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THE1B 368 + 0 368 45559 172 4 2 15 8 0 105 0 3 71 chain 15019 chr1 248956422 + 5823579 5823817 MER4B 649 + 18 299 62243 62 0 1 12 1 0 22 5 6 15 21 63 100 chain 138995 chr1 248956422 + 5824340 5825868 L1PA3long 6157 + 4612 6144 13189 29 1 0 342 0 1 326 0 4 830 chain 2824 chr1 248956422 + 5840043 5840075 MLT2D 439 + 403 435 101444 32 chain 7547 chr1 248956422 + 5892196 5892291 L1P2 5180 + 36 131 76005 95 chain 4251 chr1 248956422 + 5901078 5901184 L1MC2 1988 + 1892 1988 89814 27 43 33 36 chain 7013 chr1 248956422 + 6115618 6115882 MLT1E2 623 + 335 597 77560 25 0 1 46 161 158 32 chain 76096 chr1 248956422 + 6362933 6363907 LTR13 1007 + 7 994 22542 66 2 0 5 3 0 5 0 3 180 0 2 196 1 3 63 0 4 160 0 2 4 0 1 207 0 5 62 4 3 16 chain 3427 chr1 248956422 + 6439257 6439313 MER53 195 + 47 106 95841 20 7 10 29 chain 11158 chr1 248956422 + 6662534 6663008 LTR12 884 + 187 869 68329 42 10 14 86 300 504 36 chain 39020 chr1 248956422 + 6699936 6700411 LTR7B 505 + 6 505 35344 202 7 5 17 1 27 248 chain 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26 3 1 5 1 0 85 2 4 65 2 128 81 0 98 330 chain 29674 chr1 248956422 + 8035701 8036083 MLT2A1 477 + 0 385 42405 14 3 7 148 4 1 12 0 1 20 0 1 181 chain 8676 chr1 248956422 + 8048645 8048813 L1MA3 4352 + 4193 4352 73270 66 2 0 23 35 32 7 2 0 9 2 0 22 chain 21952 chr1 248956422 + 8165635 8165971 THE1D 372 + 0 333 53902 165 0 5 10 54 46 107 chain 3190 chr1 248956422 + 8192136 8192175 MSTA 426 + 387 426 97975 39 chain 8456 chr1 248956422 + 8226021 8226132 MER30 238 + 131 238 73781 8 1 0 60 3 0 39 chain 19876 chr1 248956422 + 8281379 8281698 THE1C 375 + 0 336 56569 89 0 1 33 12 16 46 0 2 7 45 55 87 chain 2711 chr1 248956422 + 8312557 8312586 MER53 195 - 129 158 102277 29 chain 3854 chr1 248956422 + 8369467 8369513 U5 65 + 5 51 92464 46 chain 67625 chr1 248956422 + 8500394 8501159 SVA_D 2077 + 218 1335 24540 38 0 1 346 1 41 240 0 310 18 0 1 122 chain 15497 chr1 248956422 + 8501174 8501417 SVA_E 1901 + 806 1046 31566 6 1 0 5 1 0 110 3 0 38 0 1 42 0 1 37 chain 101581 chr1 248956422 + 8501417 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21 30 328 0 24 6 3 48 chain 9699 chr1 248956422 + 8841639 8841784 L1PA8 5853 + 5704 5847 71048 34 7 6 17 2 1 85 chain 12046 chr1 248956422 + 8890362 8890566 MER51B 395 + 66 270 66765 75 30 30 74 1 0 7 4 5 13 chain 6639 chr1 248956422 + 8895019 8895096 LTR8 732 + 642 719 78844 77 chain 59495 chr1 248956422 + 8898307 8899095 LTR12 884 + 0 865 26510 53 39 0 29 25 0 54 0 26 103 0 113 159 6 8 320 chain 3618 chr1 248956422 + 8900020 8900069 MER34A1 583 + 389 437 94293 12 1 0 36 chain 13255 chr1 248956422 + 8901714 8902004 LTR47A 437 + 123 435 64700 23 33 16 20 6 39 33 11 10 13 19 25 46 8 9 78 chain 11409 chr1 248956422 + 8902688 8902866 MER30 238 + 37 229 67896 65 9 0 9 5 30 57 3 0 15 0 1 15 chain 57001 chr1 248956422 + 8912172 8912788 SVA_D 2077 + 1462 2077 27263 597 1 0 18 chain 6045 chr1 248956422 + 8924912 8925586 HERVFH21-int 991 + 586 954 80909 4 1 0 19 1 0 6 382 195 8 15 0 42 34 7 11 28 2 23 80 31 20 chain 9312 chr1 248956422 + 8954464 8954574 MER41A 554 + 430 540 71885 110 chain 25793 chr1 248956422 + 8982826 8983137 AluSc 308 + 0 308 48024 37 5 2 269 chain 22987 chr1 248956422 + 9020758 9021091 THE1B 368 + 0 368 52381 44 8 24 24 1 23 6 1 0 53 10 9 57 1 0 128 chain 4000 chr1 248956422 + 9080878 9080934 LTR24C 604 + 548 604 91456 12 1 0 4 0 1 39 chain 18566 chr1 248956422 + 9083317 9083537 MER41E 591 + 0 230 58032 100 0 1 6 0 9 114 chain 24195 chr1 248956422 + 9094338 9094628 AluSp 311 + 4 295 50506 120 0 1 170 chain 73356 chr1 248956422 + 9124259 9125131 MER11D 897 + 0 897 23244 328 12 5 241 0 23 165 1 13 8 3 0 114 chain 5370 chr1 248956422 + 9226738 9226802 L1MB8 1703 + 788 852 83847 64 chain 23638 chr1 248956422 + 9370807 9371078 AluSc 308 + 3 273 51370 254 1 0 16 chain 30306 chr1 248956422 + 9375013 9375412 MER83 447 + 0 408 41755 44 1 0 6 0 1 156 5 6 53 0 1 52 0 7 82 chain 31154 chr1 248956422 + 9389139 9389993 MER4A1_ 611 + 0 594 41018 101 355 28 67 0 2 5 0 1 11 0 1 29 12 76 29 8 7 132 19 14 33 10 11 29 1 5 13 chain 20668 chr1 248956422 + 9411844 9412205 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6157 + 5128 5888 24017 760 chain 5418 chr1 248956422 + 12900005 12900096 MER65A 464 + 289 394 83611 9 1 0 59 10 25 12 chain 110902 chr1 248956422 + 12902349 12903649 SVA_D 2077 + 0 2053 16952 13 5 0 12 5 0 412 0 156 114 12 89 36 1 41 43 1 490 38 0 1 608 chain 445291 chr1 248956422 + 12905134 12910276 L1PA4 6152 + 12 5048 4468 306 0 1 1493 1 0 128 1 2 527 108 0 1469 0 1 1109 chain 50440 chr1 248956422 + 12922660 12923314 L1PA7 6471 + 5800 6457 29402 37 1 0 440 0 5 33 10 9 133 chain 5637 chr1 248956422 + 13109880 13109952 MER65A 464 + 286 357 82619 11 1 0 60 chain 68370 chr1 248956422 + 13113520 13114374 LTR5B 1012 + 0 994 24365 123 0 14 122 0 1 229 1 0 259 4 130 116 chain 5026 chr1 248956422 + 13144540 13144602 L1MC1 2226 + 1778 1840 85542 62 chain 268839 chr1 248956422 + 13187504 13190803 L1PA7 6471 + 3147 6454 7738 429 0 3 1103 0 1 32 0 1 820 0 2 5 1 0 78 1 0 109 16 5 402 0 3 82 1 0 4 1 13 215 chain 72404 chr1 248956422 + 13206971 13207946 LTR5B 1012 + 0 994 23451 88 0 7 33 1 14 269 23 22 56 1 0 96 10 11 112 1 0 4 0 1 281 chain 33235 chr1 248956422 + 13207963 13208691 HERVK-int 6823 + 1 715 39314 4 1 0 37 52 49 9 1 0 21 1 0 12 2 0 147 0 1 21 12 1 7 0 11 134 1 0 11 68 69 63 86 81 9 1 0 19 1 0 8 chain 79140 chr1 248956422 + 13215515 13216496 LTR5B 1012 + 0 994 21827 128 1 14 346 1 0 420 0 1 85 chain 6989 chr1 248956422 + 13294083 13294161 LTR12C 1709 + 1293 1371 77645 78 chain 174300 chr1 248956422 + 13327670 13330092 SVA_E 1901 + 5 1901 10883 148 1 0 664 1 0 26 1 0 80 348 0 36 176 0 412 0 1 529 chain 16942 chr1 248956422 + 13328591 13328898 SVA_E 1901 + 969 1233 41504 5 1 0 41 7 13 67 1 0 57 47 0 81 chain 2572 chr1 248956422 + 13328786 13328817 SVA_E 1901 + 1246 1278 71030 19 1 2 11 chain 9382 chr1 248956422 + 13328975 13329145 SVA_E 1901 + 1261 1382 41504 34 50 1 52 0 1 16 4 3 14 chain 4330 chr1 248956422 + 13329009 13329059 SVA_E 1901 + 821 871 66034 50 chain 407961 chr1 248956422 + 13330567 13336570 L1PA7 6471 + 632 6454 5045 16 0 19 50 152 237 86 77 81 125 34 59 23 61 64 8 3 0 35 167 176 551 1 3 350 4 6 109 4 5 398 2 1 113 332 0 1535 0 1 32 0 1 820 0 2 5 1 0 78 1 0 109 16 5 402 0 3 82 1 0 4 1 13 215 chain 15146 chr1 248956422 + 13332948 13333125 L1PA7 6471 - 174 351 62105 177 chain 80210 chr1 248956422 + 13361259 13362240 LTR5B 1012 + 0 994 21587 128 1 14 346 1 0 420 0 1 85 chain 85358 chr1 248956422 + 13394278 13395260 SVA_D 2077 - 0 1640 20556 239 1 2 378 4 542 13 1 0 98 0 80 231 0 40 17 chain 22579 chr1 248956422 + 13421481 13421761 AluSc 308 + 9 285 53007 47 8 4 225 chain 101214 chr1 248956422 + 13439101 13440398 LTR12C 1709 + 0 1709 18160 234 1 0 44 13 20 40 3 46 80 1 0 6 11 1 178 0 280 183 1 0 5 3 1 106 11 4 141 1 5 22 0 102 60 1 0 69 1 0 82 chain 3499 chr1 248956422 + 13454412 13454522 MLT1J 494 + 12 120 95254 36 55 53 19 chain 12446 chr1 248956422 + 13459502 13459686 MER44A 345 + 90 282 66073 11 0 6 7 1 0 60 7 10 98 chain 12054 chr1 248956422 + 13499850 13500338 MER4A 717 + 0 167 66752 22 0 5 95 327 1 44 chain 3734 chr1 248956422 + 13559768 13559848 LTR10F 562 + 147 202 93370 34 26 1 20 chain 27824 chr1 248956422 + 13560840 13561211 LTR7B 505 + 0 488 45146 105 0 10 56 14 81 33 1 0 26 0 41 136 chain 43178 chr1 248956422 + 13564107 13564746 HERVH-int 3825 + 3186 3825 32666 53 49 53 6 5 0 105 0 2 21 23 23 175 1 0 201 chain 26468 chr1 248956422 + 13567107 13567494 LTR7B 505 + 0 505 47029 107 1 11 49 21 90 54 0 41 89 15 13 51 chain 206965 chr1 248956422 + 13569653 13572662 HERVIP10FH-int 2884 + 146 2876 9468 20 0 2 40 7 0 190 5 0 88 0 3 51 0 1 38 2 0 48 1 0 94 0 1 111 2 1 4 0 1 94 0 2 190 0 3 252 4 1 7 3 0 11 1 0 9 1 0 60 4 0 126 1 0 19 58 39 14 20 3 43 23 10 37 16 5 15 5 4 267 1 0 199 1 2 10 14 13 365 1 0 66 1 0 51 4 3 12 1 0 14 10 4 35 209 22 10 2 0 15 2 0 5 chain 36635 chr1 248956422 + 13572722 13573195 LTR10F 562 + 0 562 36992 81 0 5 80 7 0 18 0 93 200 8 6 79 chain 18740 chr1 248956422 + 13586795 13587054 AluSx4 309 + 10 285 57858 16 4 18 120 9 10 83 0 1 27 chain 151710 chr1 248956422 + 13657370 13659077 SVA_D 2077 + 13 2074 12244 75 1 4 266 2 1 307 0 77 144 0 183 233 0 98 141 1 0 521 5 0 11 chain 29851 chr1 248956422 + 13659234 13659577 LTR14A 344 + 3 344 42186 213 2 0 128 chain 33368 chr1 248956422 + 13661968 13662406 MER57A1 433 + 0 433 39202 131 6 0 154 1 2 146 chain 43534 chr1 248956422 + 13715983 13716460 L1PA2 6032 + 5553 6029 32424 86 1 0 390 chain 37145 chr1 248956422 + 13840540 13840951 L1PA3long 6157 + 5731 6142 36648 411 chain 25621 chr1 248956422 + 13917174 13917511 Tigger1 2417 + 842 1181 48283 244 11 13 82 chain 28883 chr1 248956422 + 13985307 13985617 L1PA3long 6157 + 5748 6058 43510 310 chain 13402 chr1 248956422 + 13995671 13995829 MLT2A1 477 + 204 362 64466 158 chain 45004 chr1 248956422 + 13999398 14000000 L1PA10 4194 + 2275 2888 31584 220 2 4 15 23 25 87 2 3 45 1 5 28 0 3 33 1 0 145 chain 214654 chr1 248956422 + 14000000 14003313 L1PA8A 6298 + 3630 6290 9187 67 2 0 167 1 3 4 0 1 96 0 1 128 5 1 175 1 0 52 1 2 30 0 1 46 306 0 128 0 3 529 0 3 528 350 0 6 3 0 171 8 7 123 0 1 158 1 2 227 chain 25222 chr1 248956422 + 14002267 14002593 THE1A 353 + 0 331 48908 107 4 3 65 0 6 150 chain 4678 chr1 248956422 + 14014584 14014673 MER58B 340 + 84 176 87391 15 1 0 30 15 19 28 chain 16544 chr1 248956422 + 14117208 14117544 THE1B 368 + 0 368 60314 44 8 23 105 1 0 22 38 49 31 49 56 38 chain 23367 chr1 248956422 + 14176884 14177166 AluSx4 309 + 7 289 51826 282 chain 19223 chr1 248956422 + 14177938 14178251 THE1C 375 + 8 336 57324 23 0 3 111 0 1 27 58 69 94 chain 97645 chr1 248956422 + 14224989 14226758 L1PA15 4387 + 2610 4356 18569 72 25 0 10 3 28 54 10 12 131 0 18 233 0 1 13 22 21 32 0 6 36 35 36 28 54 68 65 2 0 17 7 8 167 4 5 37 51 4 100 2 0 16 14 10 53 3 1 21 4 3 17 1 0 6 12 0 43 0 1 23 11 0 39 1 30 29 1 0 26 23 22 33 1 0 22 5 1 8 2 1 38 18 15 43 2 0 13 7 6 24 chain 63746 chr1 248956422 + 14233826 14234558 L1PA7 6471 + 5737 6464 25468 382 5 0 345 chain 3207 chr1 248956422 + 14235094 14235135 L1MB7 1623 + 1393 1433 97815 30 1 0 10 chain 22949 chr1 248956422 + 14257710 14257955 L1HS 6032 + 5786 6031 52447 245 chain 6320 chr1 248956422 + 14267187 14267266 MER2 342 + 131 211 79926 4 0 1 75 chain 7197 chr1 248956422 + 14381203 14381287 L1MA3 4352 + 537 621 76950 84 chain 103443 chr1 248956422 + 14388352 14389980 L1MA3 4352 + 2723 4326 17892 172 0 5 74 6 8 333 0 1 65 3 0 16 5 6 211 65 64 151 4 6 27 4 5 37 5 6 182 79 52 16 9 8 11 1 0 79 2 0 18 8 7 5 1 0 29 1 0 9 chain 18468 chr1 248956422 + 14406293 14406688 L1PB1 5432 + 5071 5427 58134 32 15 11 24 11 8 10 2 0 3 2 0 8 2 0 53 3 2 14 1 0 44 1 0 12 29 16 19 2 0 5 1 0 16 2 0 22 1 0 14 8 7 13 1 0 14 1 0 5 1 0 4 chain 3768 chr1 248956422 + 14441964 14442009 MER91A 194 + 0 45 93092 45 chain 22477 chr1 248956422 + 14477044 14477404 THE1B 368 + 0 368 53153 53 1 0 11 17 18 86 1 0 110 15 16 12 12 20 42 chain 23513 chr1 248956422 + 14510116 14510394 AluSp 311 + 20 298 51568 278 chain 3400 chr1 248956422 + 14531100 14531140 MSTB 430 + 381 421 96061 40 chain 24484 chr1 248956422 + 14542188 14542455 L1PA4 6152 + 5885 6152 50057 267 chain 16511 chr1 248956422 + 14622940 14623295 L1PA15 4387 + 3993 4327 60356 15 1 0 11 3 6 59 21 21 13 3 0 13 1 0 27 13 1 26 1 0 17 4 0 15 1 0 33 19 20 44 3 1 12 chain 35339 chr1 248956422 + 14794707 14795261 MLT2A2 560 + 0 560 37809 180 1 0 190 9 10 19 3 14 19 7 0 21 1 0 19 44 45 21 5 7 15 chain 9175 chr1 248956422 + 14904229 14904329 AluYk4 311 + 206 306 72179 100 chain 26021 chr1 248956422 + 14914908 14915213 AluSp 311 + 0 303 47686 91 0 3 192 5 0 17 chain 5797 chr1 248956422 + 14990528 14990603 MER58A 224 + 45 119 81939 51 1 0 23 chain 27132 chr1 248956422 + 15133372 15133743 THE1C 375 + 0 375 46077 138 1 5 41 15 15 176 chain 21565 chr1 248956422 + 15161656 15161934 AluSc 308 + 0 286 54419 53 11 19 214 chain 2836 chr1 248956422 + 15168286 15168338 Charlie4z 170 + 91 145 101361 12 11 13 29 chain 3323 chr1 248956422 + 15184822 15184960 MER20 218 + 36 178 96828 36 87 91 15 chain 37872 chr1 248956422 + 15234887 15235466 L1PA16 3655 + 3004 3568 36163 85 36 23 92 1 0 31 6 7 11 11 11 21 10 8 275 chain 8174 chr1 248956422 + 15279439 15279552 LTR9B 643 + 446 559 74478 30 1 0 17 1 2 64 chain 29674 chr1 248956422 + 15297934 15298488 L1PB1 5432 + 4871 5388 42400 232 1 2 9 3 0 24 1 0 9 16 11 11 3 1 50 2 1 16 1 0 41 6 5 11 69 52 24 7 0 18 chain 25265 chr1 248956422 + 15305544 15305895 THE1A 353 + 0 353 48843 24 0 1 22 0 2 61 24 23 96 0 1 4 1 0 119 chain 130434 chr1 248956422 + 15305895 15307456 THE1A-int 1579 + 0 1574 13987 438 0 2 10 0 2 53 2 1 419 1 2 5 1 0 316 0 2 214 0 8 102 chain 5477 chr1 248956422 + 15308029 15308092 THE1A 353 + 288 352 83320 41 0 1 22 chain 22284 chr1 248956422 + 15359707 15359963 AluY 311 + 39 296 53432 94 0 1 162 chain 14385 chr1 248956422 + 15395711 15395903 MER30 238 + 0 235 63059 16 0 18 63 6 31 107 chain 37896 chr1 248956422 + 15495547 15496097 PRIMA4_LTR 623 + 0 572 36142 184 5 13 10 0 1 39 5 6 56 0 1 18 1 0 23 0 1 9 15 26 121 0 1 5 9 8 50 chain 74256 chr1 248956422 + 15520285 15521840 LTR13A 966 + 0 933 23014 376 628 0 193 1 4 201 10 14 35 2 1 42 9 8 26 5 6 27 chain 3262 chr1 248956422 + 15550693 15550729 Charlie1a 1436 + 98 134 97370 36 chain 22928 chr1 248956422 + 15555715 15556011 AluSp 311 + 10 302 52472 38 21 17 237 chain 13296 chr1 248956422 + 15601784 15601947 Tigger3a 397 + 158 321 64629 163 chain 3868 chr1 248956422 + 15709471 15709518 MER3 215 + 168 215 92363 47 chain 6018 chr1 248956422 + 15790060 15791923 L1MB3 1562 + 1118 1524 81006 57 1745 289 4 1 0 56 chain 34089 chr1 248956422 + 15802122 15802583 LTR2 463 + 0 463 38637 128 0 1 17 0 1 7 6 7 216 5 6 28 1 0 28 1 0 24 chain 6197 chr1 248956422 + 15910895 15910970 U13_ 108 + 0 78 80365 44 0 3 31 chain 2978 chr1 248956422 + 16055243 16055295 MIR 256 + 79 123 100072 36 8 0 8 chain 3493 chr1 248956422 + 16280501 16280538 MADE1 96 - 59 96 95298 37 chain 24003 chr1 248956422 + 16288157 16288454 AluSc 308 + 0 305 50788 34 0 8 263 chain 10357 chr1 248956422 + 16316299 16316452 MER75 514 + 54 208 69692 34 17 19 72 1 0 29 chain 11182 chr1 248956422 + 16354615 16354771 MER4B 649 + 464 619 68280 12 1 0 83 4 3 18 0 1 38 chain 22327 chr1 248956422 + 16458010 16458307 MER75 514 + 191 514 53370 135 0 4 22 0 17 115 3 8 22 chain 6717 chr1 248956422 + 16493718 16493833 LTR2 463 + 306 422 78577 61 21 23 17 1 0 15 chain 33368 chr1 248956422 + 16518905 16519376 MER51D 577 + 108 577 39201 16 6 11 10 1 0 239 9 6 102 0 5 10 8 1 28 2 1 40 chain 151919 chr1 248956422 + 16541260 16543118 L1PA5 6144 + 4367 6140 12234 870 9 16 91 0 3 293 97 1 360 0 1 138 chain 201587 chr1 248956422 + 16569803 16572906 L1P2 5180 + 845 3231 9656 223 8 9 389 0 1 56 0 1 305 0 1 6 729 0 82 0 1 609 0 1 262 0 4 300 0 1 107 0 1 27 chain 42439 chr1 248956422 + 16640119 16641504 L1MA2 4263 + 3419 4114 33103 65 0 1 96 32 28 52 2 1 120 22 28 11 12 7 32 638 0 55 41 2 39 11 9 92 8 1 47 1 0 9 chain 6298 chr1 248956422 + 16727284 16727355 tRNA-Gly-GGG 71 + 0 71 80007 71 chain 15725 chr1 248956422 + 16740515 16740679 U1 164 + 0 164 61379 164 chain 6839 chr1 248956422 + 16861920 16861991 tRNA-Gly-GGG 71 + 0 71 78175 71 chain 6662 chr1 248956422 + 16872584 16872654 tRNA-Glu-GAA 70 + 0 70 78766 70 chain 6235 chr1 248956422 + 16875462 16875536 tRNA-Asn-AAC 74 + 0 74 80223 74 chain 7008 chr1 248956422 + 16889676 16889750 tRNA-Asn-AAC 74 + 0 74 77580 74 chain 15725 chr1 248956422 + 16895979 16896143 U1 164 + 0 164 61378 164 chain 5829 chr1 248956422 + 16911014 16911111 MER84 505 + 143 243 81787 25 22 25 50 chain 4764 chr1 248956422 + 17002674 17002728 MIR 256 + 85 139 86888 54 chain 5744 chr1 248956422 + 17117284 17117365 MER33 330 + 146 228 82158 42 5 6 34 chain 5010 chr1 248956422 + 17140822 17140882 L1MB3 1562 + 1210 1271 85608 28 0 1 32 chain 30334 chr1 248956422 + 17156062 17156545 MER51A 677 + 0 652 41727 177 0 135 118 80 113 6 0 2 64 1 0 37 chain 1765 chr1 248956422 + 17156377 17156417 MER51A 677 + 196 236 92262 40 chain 9933 chr1 248956422 + 17190923 17191045 LTR51 675 + 4 126 70565 122 chain 5404 chr1 248956422 + 17206526 17206590 MER53 195 + 0 64 83686 64 chain 10409 chr1 248956422 + 17213248 17213446 MER83 447 + 81 295 69595 83 31 46 26 18 19 40 chain 29231 chr1 248956422 + 17301714 17302081 LTR14A 344 + 0 344 43002 166 24 1 177 chain 130095 chr1 248956422 + 17343892 17345463 THE1A-int 1579 + 0 1574 14026 44 0 1 605 0 1 4 0 2 473 15 11 106 0 3 324 chain 25811 chr1 248956422 + 17345468 17345815 THE1A 353 + 0 353 47999 13 2 0 34 0 1 48 1 0 144 6 14 99 chain 7098 chr1 248956422 + 17365087 17366041 L1MB2 1706 + 1377 1694 77267 33 764 137 20 71 61 66 chain 24502 chr1 248956422 + 17490508 17490814 AluSp 311 + 0 311 50017 91 0 3 28 1 3 186 chain 32626 chr1 248956422 + 17492405 17492870 MER61-int 3695 + 422 1022 39836 47 14 0 38 0 1 37 0 1 49 0 1 45 0 96 81 0 49 74 4 3 8 1 3 67 chain 23653 chr1 248956422 + 17518898 17519185 AluSp 311 + 11 292 51348 73 6 0 208 chain 4662 chr1 248956422 + 17581352 17581429 MER53 195 + 112 194 87468 15 1 0 30 4 10 27 chain 4920 chr1 248956422 + 17754389 17754448 MER101 471 + 0 59 86053 59 chain 3191 chr1 248956422 + 17794273 17794330 MIR 256 + 70 136 97968 21 1 0 11 5 15 19 chain 26230 chr1 248956422 + 17803018 17803362 THE1C 375 + 0 341 47377 176 9 5 83 0 1 76 chain 37911 chr1 248956422 + 17807542 17807999 L1PA7 6471 + 6008 6466 36131 305 0 1 152 chain 32621 chr1 248956422 + 17809473 17809960 MER1A 529 + 39 529 39842 19 6 11 11 17 13 297 0 3 41 2 0 7 23 24 64 chain 2953 chr1 248956422 + 17824255 17824288 MER58A 224 + 50 83 100347 33 chain 2567 chr1 248956422 + 17864539 17864604 MER33 330 + 8 74 103251 18 26 27 21 chain 4504 chr1 248956422 + 17911679 17911734 MER4A1 472 + 417 472 88299 55 chain 10950 chr1 248956422 + 17913345 17913492 THE1B 368 + 0 150 68620 13 2 0 24 0 5 108 chain 8153 chr1 248956422 + 17981016 17981152 L1MB3 1562 + 1280 1425 74512 62 14 13 17 1 12 35 1 0 6 chain 28163 chr1 248956422 + 18011233 18011560 L1PA6 6164 + 5833 6160 44611 327 chain 3361 chr1 248956422 + 18050400 18050448 MIR3 191 + 81 128 96471 37 1 0 10 chain 23762 chr1 248956422 + 18071675 18071981 AluYb8 318 + 0 302 51177 104 7 8 20 17 12 158 chain 18804 chr1 248956422 + 18147793 18148092 THE1B 368 + 0 301 57774 176 20 19 4 0 1 14 0 4 6 26 24 53 chain 49724 chr1 248956422 + 18165572 18166155 LTR10C 591 + 0 584 29671 147 1 0 363 0 2 72 chain 7265 chr1 248956422 + 18423423 18423508 MER4B 649 + 0 85 76778 85 chain 27857 chr1 248956422 + 18433247 18433597 THE1A 353 + 0 353 45097 13 2 0 34 0 1 285 0 4 16 chain 105194 chr1 248956422 + 18450931 18452229 L1PA8 5853 + 4566 5851 17660 439 1 4 85 1 4 74 13 0 392 1 0 44 2 0 74 1 0 57 3 2 19 1 0 91 chain 79739 chr1 248956422 + 18462091 18463028 L1PA6 6164 + 5213 6149 21684 651 2 0 138 1 2 145 chain 6164 chr1 248956422 + 18545174 18545299 MER63A 208 + 89 208 80470 65 32 27 12 1 0 15 chain 5136 chr1 248956422 + 18590093 18590196 MADE1 96 - 0 87 84987 41 17 0 6 10 11 29 chain 3639 chr1 248956422 + 18608754 18608796 MER20 218 + 37 79 94108 42 chain 29250 chr1 248956422 + 18696534 18696984 L1MA3 4352 + 3867 4287 42962 226 44 31 7 14 0 4 0 1 40 1 0 84 2 0 22 1 0 5 chain 3179 chr1 248956422 + 18704659 18704701 MER58A 224 + 165 208 98115 34 0 1 8 chain 9267 chr1 248956422 + 18795018 18795146 L1PA8 5853 + 5716 5843 71983 24 2 1 19 1 0 13 0 1 69 chain 35718 chr1 248956422 + 18827599 18828063 MER1A 529 + 65 527 37590 27 11 7 356 8 10 62 chain 24199 chr1 248956422 + 18831252 18831653 MSTA 426 + 1 415 50499 105 0 1 40 5 9 60 23 24 4 1 0 29 37 45 97 chain 11344 chr1 248956422 + 18975316 18975448 MER44A 345 + 182 314 68012 132 chain 19042 chr1 248956422 + 19005599 19005949 THE1B 368 + 0 357 57508 102 21 22 45 65 71 66 7 6 21 0 1 23 chain 3409 chr1 248956422 + 19025848 19025887 MER4D0 881 + 768 807 95997 39 chain 25810 chr1 248956422 + 19264149 19264442 AluSg7 307 + 9 302 48000 293 chain 13647 chr1 248956422 + 19279813 19280042 MER30 238 + 0 238 64095 42 5 4 11 3 1 41 11 0 12 4 30 58 3 0 39 chain 43302 chr1 248956422 + 19297944 19298803 MLT2A2 560 + 4 547 32570 56 0 1 142 0 1 291 318 0 52 chain 3203 chr1 248956422 + 19394875 19395058 MER47B 469 + 96 342 97868 32 133 196 18 chain 16575 chr1 248956422 + 19424401 19424599 7SLRNA 320 + 18 216 60289 198 chain 3291 chr1 248956422 + 19475721 19475802 MADE2 80 + 0 80 97097 20 31 30 30 chain 23805 chr1 248956422 + 19486302 19486580 AluSc 308 + 7 292 51095 50 0 6 145 0 1 83 chain 6613 chr1 248956422 + 19510603 19510683 U4 144 + 11 91 78927 80 chain 3733 chr1 248956422 + 19526964 19527015 L1MB3 1562 + 1431 1480 93374 7 2 0 42 chain 40473 chr1 248956422 + 19541476 19541984 MER9a3 513 + 0 513 34331 17 0 3 77 5 6 7 0 1 145 1 0 178 0 1 78 chain 390506 chr1 248956422 + 19542509 19547185 HERVK9-int 4720 + 57 4718 5311 16 2 1 50 1 0 7 45 43 80 0 3 970 0 1 1532 0 5 536 20 8 226 0 1 605 1 0 101 16 8 442 10 9 8 0 1 8 chain 38077 chr1 248956422 + 19547188 19547689 MER9a3 513 + 0 505 36012 18 0 2 80 9 11 147 1 0 176 0 1 70 chain 4751 chr1 248956422 + 19549063 19549124 MER58A 224 + 8 69 86959 61 chain 16579 chr1 248956422 + 19809537 19809737 MER1A 529 + 63 263 60287 200 chain 36849 chr1 248956422 + 19816705 19817158 MER4A1 472 + 0 458 36848 44 1 0 5 0 1 138 0 5 265 chain 4392 chr1 248956422 + 19857867 19858046 MER53 195 + 3 186 88929 32 110 114 37 chain 30047 chr1 248956422 + 19944624 19945000 MLT2A1 477 + 2 383 42004 140 0 1 26 1 5 209 chain 5515 chr1 248956422 + 19960283 19960355 LTR9B 643 + 6 77 83173 66 1 0 5 chain 42907 chr1 248956422 + 19981938 19982511 LTR19B 566 + 0 566 32831 138 22 0 204 2 1 101 1 3 20 13 27 72 chain 16036 chr1 248956422 + 19989410 19989606 LOR1a 498 + 0 197 60982 47 0 1 149 chain 87106 chr1 248956422 + 19989641 19990689 MER11C 1089 + 0 1073 20214 225 0 5 338 11 10 138 0 5 54 0 1 86 0 15 196 chain 114180 chr1 248956422 + 19995934 19997410 L1P2 5180 + 2 1491 16526 64 0 1 83 2 1 43 1 0 53 3 2 207 6 5 54 1 0 272 1 0 6 0 16 221 0 1 398 8 9 53 chain 45371 chr1 248956422 + 19997410 19997923 MER9a2 513 + 0 513 31381 513 chain 386337 chr1 248956422 + 19998523 20003214 HERVK9-int 4720 + 6 4720 5381 15 1 0 8 19 7 13 13 9 66 1 0 7 2 1 26 6 5 175 18 19 1013 1 2 248 0 1 40 0 1 165 1 0 273 4 0 200 1 9 160 2 1 155 0 1 365 0 2 607 0 14 986 0 20 100 chain 44268 chr1 248956422 + 20003218 20003727 MER9a2 513 + 4 513 31974 509 chain 340277 chr1 248956422 + 20003727 20007765 L1PA6 6164 + 1492 6162 6062 385 0 1 454 0 2 264 0 2 291 0 1 127 0 1 162 7 9 122 0 1 455 1 2 989 0 1 95 12 632 50 1 2 613 1 0 9 chain 33997 chr1 248956422 + 20040684 20041121 MER4A1 472 + 0 458 38708 247 14 35 176 chain 4341 chr1 248956422 + 20045821 20045873 LTR7B 505 + 442 494 89227 52 chain 197633 chr1 248956422 + 20050014 20052716 MER4-int 2692 + 1 2692 9792 10 1 0 25 2 0 36 1 2 25 2 0 5 3 6 61 4 5 139 0 1 218 5 14 29 0 5 30 0 4 42 0 1 66 3 0 52 0 13 142 0 1 125 0 1 19 3 0 6 35 10 103 0 3 252 0 4 66 1 0 378 5 7 128 9 6 65 85 0 52 6 52 210 0 7 170 0 12 83 chain 46433 chr1 248956422 + 20105243 20105797 MER41A 554 + 0 554 30868 554 chain 39196 chr1 248956422 + 20107959 20108449 MER41A 554 + 0 491 35219 156 0 1 243 0 1 39 6 5 46 chain 7849 chr1 248956422 + 20239475 20239577 MER4D1 891 + 199 329 75258 39 0 28 63 chain 43747 chr1 248956422 + 20248243 20249026 MER41A 554 + 0 554 32288 315 230 0 113 1 2 124 chain 12732 chr1 248956422 + 20248569 20248768 L1PA7 6471 + 6275 6466 65560 17 25 16 10 0 4 106 1 0 31 2 0 7 chain 3592 chr1 248956422 + 20264846 20264888 MER5A1 166 + 58 100 94503 42 chain 3343 chr1 248956422 + 20269307 20269365 MLT1B 390 + 20 88 96661 30 5 15 23 chain 14973 chr1 248956422 + 20364326 20364555 MSTC 436 + 218 436 62295 15 25 10 34 3 7 152 chain 64385 chr1 248956422 + 20407181 20408071 L1PA11 4918 + 3709 4578 25329 256 7 8 358 2 0 62 18 16 31 0 1 33 2 0 14 1 0 20 4 0 9 31 22 15 1 0 13 2 0 11 chain 5990 chr1 248956422 + 20517235 20517354 HUERS-P1-int 2401 + 2024 2139 81126 14 1 0 3 1 0 10 4 6 4 1 0 9 7 6 48 2 0 15 chain 18872 chr1 248956422 + 20617383 20617682 THE1B 368 + 5 306 57680 164 73 75 62 chain 45928 chr1 248956422 + 20627892 20628503 MER4B 649 + 0 619 31088 47 3 0 5 5 8 147 4 11 100 0 1 4 0 1 240 11 10 45 chain 170800 chr1 248956422 + 20814810 20817252 SVA_E 1901 + 0 1894 11063 153 1 0 172 3 0 251 4 3 16 0 3 219 1 0 26 2 0 80 101 0 83 174 0 56 268 0 159 0 1 660 1 0 12 chain 3068 chr1 248956422 + 20815738 20815795 SVA_E 1901 + 1221 1278 61865 57 chain 12126 chr1 248956422 + 20815922 20816096 SVA_E 1901 + 1132 1259 52365 89 1 2 32 48 0 4 chain 3864 chr1 248956422 + 20816050 20816089 SVA_E 1901 + 1009 1048 92386 39 chain 4739 chr1 248956422 + 20816152 20816220 SVA_E 1901 + 1315 1382 52365 50 4 3 14 chain 11202 chr1 248956422 + 20816220 20816420 SVA_E 1901 + 1129 1315 60099 24 49 0 14 32 66 74 0 1 7 chain 2226 chr1 248956422 + 20816244 20816269 SVA_E 1901 + 1280 1305 88600 25 chain 2102 chr1 248956422 + 20816307 20816330 SVA_E 1901 + 943 966 94720 23 chain 26404 chr1 248956422 + 20833652 20833941 L1PA2 6032 + 3717 4006 47113 289 chain 148512 chr1 248956422 + 21023287 21024911 SVA_F 1814 + 0 1814 12454 13 0 1 874 1 0 47 1 66 147 0 126 530 1 0 10 chain 5992 chr1 248956422 + 21036384 21036454 MER52D 1964 + 1892 1962 81118 70 chain 165542 chr1 248956422 + 21052543 21054484 SVA_D 2077 + 0 2077 11374 11 3 0 531 0 40 104 0 40 192 2 0 18 5 1 11 14 7 26 1 0 4 46 18 33 0 2 186 0 1 78 0 98 676 chain 3947 chr1 248956422 + 21053465 21053511 SVA_D 2077 + 1262 1308 44643 46 chain 143482 chr1 248956422 + 21092492 21094109 L1PA5 6144 + 4525 6141 12812 1254 3 0 300 0 2 60 chain 23878 chr1 248956422 + 21094144 21094410 L1PA5 6144 + 5510 5776 50982 266 chain 31674 chr1 248956422 + 21094413 21094765 L1PA5 6144 + 5776 6128 40603 352 chain 32427 chr1 248956422 + 21104391 21104921 L1PA15 4387 + 3837 4356 40016 51 2 0 44 1 0 128 3 1 41 4 3 19 0 8 53 1 0 22 4 0 6 6 5 45 13 14 39 3 1 12 6 0 27 chain 32452 chr1 248956422 + 21190399 21190817 MER4A1 472 + 0 472 39989 231 1 22 11 0 32 33 0 1 142 chain 20609 chr1 248956422 + 21215513 21215779 AluSp 311 + 41 301 55621 91 2 0 151 4 0 18 chain 14127 chr1 248956422 + 21327756 21328099 MER1B 344 + 37 335 63409 44 10 14 100 21 12 13 23 6 25 59 30 27 8 14 13 chain 23003 chr1 248956422 + 21376873 21377225 THE1A 353 + 0 351 52352 13 2 0 34 0 1 42 5 4 17 0 2 6 17 15 52 7 8 157 chain 26257 chr1 248956422 + 21377554 21377859 AluSp 311 + 0 300 47342 128 5 0 172 chain 163176 chr1 248956422 + 21387076 21389774 SVA_F 1814 + 10 1814 11535 105 1 15 772 275 0 45 0 15 184 648 0 668 chain 2912 chr1 248956422 + 21387954 21387988 SVA_F 1814 + 1093 1127 59371 34 chain 9388 chr1 248956422 + 21387988 21388131 SVA_F 1814 + 937 1094 45313 10 1 15 132 chain 2983 chr1 248956422 + 21388153 21388190 SVA_F 1814 + 925 976 71810 22 2 16 13 chain 1118 chr1 248956422 + 21388190 21388226 SVA_F 1814 + 912 948 44255 36 chain 6645 chr1 248956422 + 21388458 21388528 SVA_F 1814 + 1019 1089 59058 70 chain 17914 chr1 248956422 + 21388528 21389105 SVA_F 1814 + 962 1272 44255 116 221 0 87 1 0 4 53 9 5 1 0 89 chain 3172 chr1 248956422 + 21388644 21388677 SVA_F 1814 + 1254 1287 67165 33 chain 9336 chr1 248956422 + 21388677 21388776 SVA_F 1814 + 1017 1116 71840 99 chain 905 chr1 248956422 + 21388798 21388865 SVA_F 1814 + 769 838 67509 6 1 0 25 14 17 21 chain 4912 chr1 248956422 + 21388957 21389010 SVA_F 1814 + 1219 1272 64132 53 chain 40612 chr1 248956422 + 21396460 21397016 LTR10E 629 + 0 557 34214 18 1 0 139 23 27 112 5 4 79 1 0 178 chain 122540 chr1 248956422 + 21397070 21401468 MER41-int 2638 + 555 2636 15108 35 0 13 46 2233 192 110 3 36 44 1 0 4 15 16 167 0 1 16 0 4 60 30 24 57 310 9 281 1 0 142 18 16 16 9 7 60 13 10 52 23 4 36 4 5 16 0 2 66 1 0 191 1 0 158 1 2 74 0 4 59 10 11 35 chain 40516 chr1 248956422 + 21401877 21402420 MER41B 635 + 59 608 34301 69 0 1 157 3 4 176 3 2 81 12 17 42 chain 7386 chr1 248956422 + 21544356 21544460 MER57-int 2662 + 2248 2352 76433 7 0 1 76 2 0 5 1 2 13 chain 25542 chr1 248956422 + 21552205 21552506 AluSp 311 + 4 309 48421 99 0 4 202 chain 3384 chr1 248956422 + 21564697 21564736 MIRb 242 + 67 106 96234 39 chain 3766 chr1 248956422 + 21741139 21741179 U7 62 + 0 40 93099 40 chain 6847 chr1 248956422 + 21780571 21780694 L1MB8 1703 + 1434 1563 78150 40 21 27 62 chain 22755 chr1 248956422 + 21781144 21781441 AluSp 311 + 8 284 52747 120 21 0 156 chain 4828 chr1 248956422 + 21819426 21819486 MSTB 430 + 322 384 86548 30 0 2 30 chain 13989 chr1 248956422 + 21946043 21946696 L1PB1 5432 + 5118 5430 63612 16 1 0 12 1 0 12 17 11 43 11 9 15 1 0 1 305 0 40 4 3 16 6 0 8 13 4 18 13 10 10 2 0 24 1 0 22 9 8 4 1 0 22 1 0 4 chain 2906 chr1 248956422 + 21966676 21966715 LTR16C 481 + 356 391 100798 7 4 0 28 chain 35077 chr1 248956422 + 21970523 21971019 MER41A 554 + 47 554 37971 19 0 3 18 31 17 213 2 0 67 0 23 13 6 7 127 chain 23099 chr1 248956422 + 21987196 21987470 AluSg7 307 + 24 299 52214 107 0 1 167 chain 35521 chr1 248956422 + 21996199 21996695 MER41A 554 + 47 554 37710 19 0 3 18 31 17 213 2 0 67 0 23 23 0 1 123 chain 45430 chr1 248956422 + 22070131 22071032 LTR10C 591 + 0 586 31347 37 6 7 195 0 13 65 331 0 194 0 2 73 chain 76675 chr1 248956422 + 22300011 22301219 L1PA13 3608 + 2389 3548 22399 228 0 1 275 0 4 7 20 3 53 65 64 102 10 0 34 1 0 112 13 15 49 6 5 50 8 5 47 10 6 19 1 0 19 7 4 13 5 0 14 1 0 6 21 12 12 chain 22097 chr1 248956422 + 22319473 22319756 AluSp 311 + 15 308 53702 28 0 1 144 9 18 102 chain 6671 chr1 248956422 + 22353555 22353693 MER96B 391 + 232 343 78732 39 9 5 18 5 0 38 18 0 11 chain 25324 chr1 248956422 + 22365640 22366009 THE1C 375 + 0 375 48751 180 40 43 131 0 3 18 chain 8149 chr1 248956422 + 22433477 22433618 MER2 342 + 146 289 74522 33 7 11 56 14 12 31 chain 6004 chr1 248956422 + 22478594 22478668 MIR 256 + 157 231 81061 74 chain 6496 chr1 248956422 + 22656308 22656390 L1MB5 1630 + 1176 1259 79366 64 0 1 18 chain 53054 chr1 248956422 + 22698936 22699613 L1PA8 5853 + 5184 5853 28554 4 1 0 42 3 0 213 0 1 77 0 2 39 1 0 47 2 0 70 1 0 8 0 6 7 8 1 42 1 0 17 1 0 93 chain 68058 chr1 248956422 + 22705835 22706621 L1PA5 6144 + 5351 6139 24446 91 0 1 510 1 2 184 chain 31892 chr1 248956422 + 22935455 22935899 MER51E 476 + 0 476 40420 288 14 18 98 6 34 38 chain 8660 chr1 248956422 + 22975035 22975157 MER4E 760 + 627 752 73325 78 10 13 34 chain 48938 chr1 248956422 + 22987774 22988400 MER4A1_ 611 + 0 611 29969 71 2 3 48 1 2 170 17 0 317 chain 3190 chr1 248956422 + 22994432 22994471 MER4-int 2692 + 126 165 97980 39 chain 7862 chr1 248956422 + 23004403 23004651 MER4-int 2692 + 2566 2671 75221 63 143 0 42 chain 29512 chr1 248956422 + 23004679 23005109 MER4A1_ 611 + 0 426 42591 13 1 0 8 13 13 88 1 2 220 13 17 38 9 1 26 chain 9165 chr1 248956422 + 23137174 23137352 L1MB7 1623 + 994 1169 72197 13 16 8 23 8 13 90 7 8 5 1 0 15 chain 28277 chr1 248956422 + 23204891 23205379 L1PB1 5432 + 4962 5420 44445 141 0 3 8 1 0 24 27 21 10 3 1 13 2 0 37 2 1 16 1 0 44 1 0 15 3 0 15 8 0 14 1 0 3 1 0 4 1 0 14 2 0 22 4 3 20 1 0 13 1 0 16 chain 8030 chr1 248956422 + 23246212 23246332 L1PB1 5432 + 5308 5420 74806 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 128902 chr1 248956422 + 23256770 23258418 SVA_C 1631 + 0 1624 14164 19 8 5 12 5 0 8 1 0 496 40 0 297 0 42 38 0 1 27 1 0 4 46 15 37 25 21 229 3 1 223 0 20 129 chain 3714 chr1 248956422 + 23278406 23278461 MLT1F1 559 + 485 540 93509 17 0 3 17 3 0 18 chain 27902 chr1 248956422 + 23335836 23336132 AluYa5 310 + 1 297 45036 296 chain 23772 chr1 248956422 + 23348397 23348682 AluSp 311 + 10 294 51161 122 1 0 162 chain 6802 chr1 248956422 + 23370253 23370337 HY4 93 + 0 84 78311 84 chain 23938 chr1 248956422 + 23374353 23374720 LTR7 482 + 0 482 50884 23 0 23 55 13 63 36 1 11 10 8 40 26 11 10 8 0 1 176 chain 42783 chr1 248956422 + 23411547 23412099 LTR61 567 + 0 565 32898 25 0 1 29 0 11 124 1 0 4 0 1 26 5 3 168 0 3 63 4 3 71 0 1 32 chain 4407 chr1 248956422 + 23498070 23498119 MADE1 96 + 47 96 88861 49 chain 149704 chr1 248956422 + 23503236 23504985 SVA_D 2077 + 6 2077 12369 27 0 1 20 6 1 823 0 183 13 12 21 6 1 0 8 0 1 25 1 3 6 2 0 5 3 0 39 0 1 47 1 2 128 0 135 435 0 1 122 1 0 18 chain 2916 chr1 248956422 + 23505348 23505380 U2 167 + 0 32 100698 32 chain 10475 chr1 248956422 + 23537469 23537835 L1MB7 1623 + 1095 1412 69459 8 0 1 83 203 156 20 3 1 12 1 0 36 chain 44083 chr1 248956422 + 23596992 23597591 MER41B 635 + 0 635 32092 21 2 4 68 1 0 26 12 13 113 0 38 27 4 0 325 chain 23220 chr1 248956422 + 23674731 23675101 THE1C 375 + 0 375 52053 12 3 1 34 0 6 17 43 44 70 1 2 164 1 0 25 chain 15169 chr1 248956422 + 23686363 23688149 Tigger4 2445 + 463 2052 62078 24 2 0 56 3 1 43 1527 1331 118 0 3 13 chain 141995 chr1 248956422 + 23688161 23689767 SVA_D 2077 + 0 2075 12936 8 1 0 3 0 11 6 1 0 9 1 0 853 0 269 28 0 1 51 0 78 41 0 115 591 2 0 11 chain 25553 chr1 248956422 + 23706650 23706951 AluSp 311 + 0 296 48395 120 4 0 153 1 0 23 chain 5260 chr1 248956422 + 23769255 23769332 L1PB1 5432 + 5351 5424 84388 21 1 0 20 1 0 12 1 0 14 1 0 6 chain 3548 chr1 248956422 + 23830162 23830203 MLT2C2 476 + 435 476 94871 41 chain 24110 chr1 248956422 + 23851669 23852024 L1PA8 5853 + 5506 5853 50631 58 1 0 46 2 0 43 1 0 26 1 0 4 19 19 38 2 1 17 3 2 10 2 1 82 chain 146353 chr1 248956422 + 23852444 23854063 SVA_D 2077 + 0 2062 12585 19 0 3 890 0 86 33 0 51 24 1 304 652 chain 37970 chr1 248956422 + 23887709 23888230 HERV1_LTRd 520 + 0 517 36093 55 1 0 8 11 15 36 2 0 22 1 2 12 10 9 200 7 2 156 chain 38154 chr1 248956422 + 23933189 23933650 LTR2 463 + 0 463 35945 129 0 3 22 4 3 306 chain 134063 chr1 248956422 + 23934958 23936489 SVA_D 2077 + 0 2066 13648 30 0 2 135 5 13 46 1 2 483 0 40 157 2 0 5 0 488 43 0 1 9 0 1 22 4 0 589 chain 25010 chr1 248956422 + 23942390 23942689 AluSp 311 + 4 303 49259 299 chain 14481 chr1 248956422 + 24013207 24013806 MLT1A0 366 + 35 342 62917 44 2 0 58 15 33 25 28 36 33 331 14 18 0 1 45 chain 36980 chr1 248956422 + 24103482 24103956 LTR15 485 + 0 478 36746 149 0 2 124 0 4 158 1 0 5 20 19 17 chain 3590 chr1 248956422 + 24168017 24168060 MLT2B3 573 + 526 569 94515 43 chain 7148 chr1 248956422 + 24226174 24226303 MER2 342 + 83 213 77106 59 35 36 35 chain 21318 chr1 248956422 + 24259335 24259579 AluYc 301 + 55 301 54739 65 0 2 179 chain 8089 chr1 248956422 + 24260031 24260137 L1MB2 1706 + 1446 1551 74660 78 1 0 27 chain 4628 chr1 248956422 + 24279773 24279852 MADE1 96 + 0 96 87655 28 1 17 26 6 7 18 chain 14832 chr1 248956422 + 24425225 24425429 MER30 238 + 0 236 62475 24 0 18 66 4 21 19 3 0 88 chain 3537 chr1 248956422 + 24488073 24488125 L1MB3 1562 + 1037 1086 94960 7 3 0 42 chain 3642 chr1 248956422 + 24493386 24493447 MER47A 366 + 303 365 94090 27 10 11 24 chain 31895 chr1 248956422 + 24520476 24520829 L1PA4 6152 + 5785 6138 40418 353 chain 25796 chr1 248956422 + 24602321 24602595 AluYd8 298 + 21 295 48019 274 chain 29726 chr1 248956422 + 24631930 24632248 AluYb8 318 + 0 316 42333 132 2 0 184 chain 17960 chr1 248956422 + 24663653 24663862 AluSc5 308 + 57 266 58692 209 chain 28792 chr1 248956422 + 24675228 24675535 AluYa5 310 + 1 308 43647 307 chain 17708 chr1 248956422 + 24721948 24722227 LTR12C 1709 + 769 997 58997 68 1 0 116 51 1 43 chain 8472 chr1 248956422 + 24739491 24739593 LTR29 598 + 465 567 73743 102 chain 13409 chr1 248956422 + 24796510 24796674 Tigger3a 397 + 143 307 64457 164 chain 163553 chr1 248956422 + 24798673 24801083 SVA_F 1814 + 0 1814 11507 528 3 0 233 1 0 94 90 0 43 1 0 49 0 15 70 469 0 142 49 0 473 0 2 165 chain 513 chr1 248956422 + 24799532 24799565 SVA_F 1814 + 542 575 69632 33 chain 2135 chr1 248956422 + 24799574 24799622 SVA_F 1814 + 856 905 55462 24 0 1 24 chain 5582 chr1 248956422 + 24799785 24799842 SVA_F 1814 + 1208 1265 79796 57 chain 2741 chr1 248956422 + 24799842 24799904 SVA_F 1814 + 962 1023 62389 39 1 0 22 chain 3505 chr1 248956422 + 24799917 24799961 SVA_F 1814 + 1170 1213 70826 17 5 4 22 chain 3514 chr1 248956422 + 24799961 24800040 SVA_F 1814 + 1037 1116 55462 79 chain 4642 chr1 248956422 + 24800074 24800179 SVA_F 1814 + 1023 1128 62389 105 chain 2144 chr1 248956422 + 24800180 24800254 SVA_F 1814 + 1177 1208 64758 14 43 0 17 chain 3890 chr1 248956422 + 24874688 24874747 MER63B 433 + 336 392 92220 11 1 0 27 1 0 4 1 0 14 chain 3575 chr1 248956422 + 24937332 24937376 MER45A 178 + 134 178 94632 44 chain 261296 chr1 248956422 + 25058192 25061054 L1PA3long 6157 + 3273 6157 7932 1500 0 22 1362 chain 9334 chr1 248956422 + 25096585 25096761 MER20 218 + 38 218 71843 43 1 4 76 40 41 16 chain 20457 chr1 248956422 + 25116352 25116578 L1P1 4361 + 1135 1361 55823 226 chain 5371 chr1 248956422 + 25165118 25165302 L1MA8 2339 + 2160 2324 83842 34 5 0 15 7 8 11 11 9 17 59 45 25 chain 27815 chr1 248956422 + 25176543 25176896 THE1B 368 + 0 356 45162 13 2 0 27 0 5 4 0 1 120 1 0 186 chain 28818 chr1 248956422 + 25214434 25214741 AluYa5 310 + 0 306 43598 98 1 0 208 chain 4882 chr1 248956422 + 25250521 25250611 MLT1E2 623 + 22 109 86248 22 1 0 22 13 11 32 chain 18494 chr1 248956422 + 25270374 25270627 MER1B 344 + 89 339 58110 127 4 0 49 10 11 63 chain 6087 chr1 248956422 + 25304610 25304701 L1MA4 2864 + 2480 2571 80773 14 6 5 21 0 1 50 chain 8198 chr1 248956422 + 25310585 25310689 MSTD-int 1705 + 40 144 74417 104 chain 556150 chr1 248956422 + 25506597 25512707 L1PA2 6032 + 12 6020 352 555 0 4 346 1 2 656 0 1 695 108 0 3749 chain 7807 chr1 248956422 + 25543109 25543201 MER30 238 + 138 230 75364 92 chain 83575 chr1 248956422 + 25587849 25588817 LTR5_Hs 974 + 0 974 20897 285 0 1 244 1 2 285 0 6 47 2 0 104 chain 139600 chr1 248956422 + 25603277 25604932 SVA_F 1814 + 0 1791 13125 149 11 0 352 0 40 83 0 40 105 0 40 88 0 65 39 1 0 188 48 0 459 0 11 132 chain 2103 chr1 248956422 + 25604293 25604329 SVA_F 1814 + 1140 1176 62126 36 chain 4775 chr1 248956422 + 25879252 25879309 MER39B 650 + 476 533 86830 57 chain 31934 chr1 248956422 + 25942980 25943434 Harlequin-int 5206 + 3573 4020 40388 25 5 1 76 6 1 12 1 2 17 1 0 5 0 1 85 22 23 199 chain 21459 chr1 248956422 + 25996396 25996654 AluY 311 + 39 295 54569 84 3 0 7 1 2 163 chain 10920 chr1 248956422 + 26077757 26077912 MLT1A 405 + 4 164 68667 115 12 17 28 chain 7860 chr1 248956422 + 26089833 26089941 L1MC1 2226 + 1291 1393 75225 9 6 0 93 chain 48917 chr1 248956422 + 26093338 26093914 LTR10C 591 + 0 591 29974 491 4 19 81 chain 25247 chr1 248956422 + 26141040 26141330 AluYc3 301 + 0 292 48877 20 0 1 92 1 2 177 chain 38644 chr1 248956422 + 26216639 26217124 LTR2C 499 + 0 499 35610 186 0 6 109 0 1 64 2 8 66 0 1 58 chain 41698 chr1 248956422 + 26268831 26269405 LTR10A 586 + 0 586 33551 7 0 4 33 1 9 88 1 0 61 8 9 27 0 1 42 1 2 220 8 6 77 chain 10806 chr1 248956422 + 26349611 26349741 MSTC 436 + 0 131 68843 112 0 1 18 chain 13896 chr1 248956422 + 26398706 26398861 L1PA6 6164 + 6005 6160 63739 155 chain 40081 chr1 248956422 + 26509978 26512889 Tigger1 2417 + 45 1477 34602 40 17 19 25 12 14 152 2177 691 53 0 3 64 87 84 15 1 0 4 0 1 76 7 8 78 0 3 86 1 0 16 chain 176015 chr1 248956422 + 26595455 26597508 SVA_D 2077 + 10 2073 10779 6 1 0 6 1 0 12 0 5 839 0 83 80 7 26 24 1 0 92 49 0 53 46 0 152 0 1 684 chain 2264 chr1 248956422 + 26596524 26596555 SVA_D 2077 + 1310 1341 42168 31 chain 2989 chr1 248956422 + 26596627 26596672 SVA_D 2077 + 878 922 52006 29 0 1 10 2 0 4 chain 29809 chr1 248956422 + 26635238 26635617 MER41-int 2638 + 2028 2404 42225 67 3 0 309 chain 42228 chr1 248956422 + 26635904 26637291 MER41B 635 + 0 635 33230 126 0 1 38 487 35 98 0 1 77 1 0 90 20 19 29 300 0 64 1 3 5 2 0 49 chain 6040 chr1 248956422 + 26814579 26814649 MLT1B 390 + 264 334 80927 70 chain 103602 chr1 248956422 + 26817473 26819341 SVA_F 1814 + 335 1472 17864 553 1 0 60 401 14 127 343 0 383 chain 29079 chr1 248956422 + 26818090 26818466 SVA_F 1814 + 966 1291 43220 125 50 0 183 1 0 17 chain 2288 chr1 248956422 + 26818215 26818240 SVA_F 1814 + 1267 1291 65752 7 1 0 17 chain 11689 chr1 248956422 + 26818666 26818789 SVA_F 1814 + 1091 1214 67413 123 chain 4450 chr1 248956422 + 26818811 26818860 SVA_F 1814 + 1089 1138 67373 49 chain 9063 chr1 248956422 + 26818860 26818958 SVA_F 1814 + 1089 1187 66950 98 chain 24885 chr1 248956422 + 26835431 26835721 AluSc5 308 + 11 299 49467 283 2 0 5 chain 3469 chr1 248956422 + 26858563 26858601 MER66B 489 + 295 333 95463 38 chain 17386 chr1 248956422 + 26859522 26859746 MER30 238 + 0 238 59376 107 5 16 73 0 3 39 chain 5073 chr1 248956422 + 26953980 26954046 L1MB3 1562 + 1351 1417 85290 66 chain 26834 chr1 248956422 + 27027849 27028576 MER41E 591 + 22 449 46494 101 16 15 89 2 0 19 12 21 106 316 8 22 1 3 24 0 2 5 2 0 12 chain 33958 chr1 248956422 + 27060271 27060727 LTR2 463 + 0 463 38740 61 0 3 150 0 1 67 10 8 11 0 2 4 1 0 55 12 13 41 0 3 44 chain 170762 chr1 248956422 + 27063473 27065559 SVA_E 1901 + 0 1900 11066 101 0 23 29 1 0 16 1 10 15 0 1 622 1 0 26 1 0 84 4 0 29 46 0 71 166 0 873 chain 2515 chr1 248956422 + 27064403 27064439 SVA_E 1901 + 1131 1167 58782 36 chain 7195 chr1 248956422 + 27064520 27064623 SVA_E 1901 + 1280 1382 58782 85 4 3 14 chain 3412 chr1 248956422 + 27064640 27064686 SVA_E 1901 + 1234 1280 64431 46 chain 27490 chr1 248956422 + 27156509 27156802 AluYd8 298 + 0 293 45594 293 chain 32506 chr1 248956422 + 27178326 27178722 MER51B 395 + 0 395 39939 256 2 1 138 chain 27120 chr1 248956422 + 27187826 27189744 MER51B 395 + 0 388 46097 106 944 17 118 9 8 42 602 0 97 chain 5065 chr1 248956422 + 27209102 27209160 MER30 238 + 46 104 85333 58 chain 46691 chr1 248956422 + 27220645 27221174 SVA_C 1631 + 1101 1631 30778 81 1 2 447 chain 9672 chr1 248956422 + 27325218 27325325 U6 107 + 0 107 71113 107 chain 32898 chr1 248956422 + 27384937 27385315 L1PA6 6164 + 5782 6161 39590 193 0 1 185 chain 28323 chr1 248956422 + 27471062 27471365 AluYa5 310 + 0 302 44378 97 1 0 205 chain 25260 chr1 248956422 + 27480740 27481065 AluY 311 + 8 310 48850 50 0 6 108 29 0 138 chain 53944 chr1 248956422 + 27500671 27501631 L1PA8A 6298 + 5648 6291 28250 209 316 0 321 11 10 103 chain 24911 chr1 248956422 + 27502073 27502377 AluSp 311 + 11 308 49412 20 7 0 277 chain 8748 chr1 248956422 + 27630352 27630473 MER30 238 + 126 238 73104 6 4 0 6 2 0 61 3 0 39 chain 36165 chr1 248956422 + 27682634 27683084 LTR2 463 + 0 463 37299 30 0 7 18 1 4 68 0 3 333 chain 3812 chr1 248956422 + 27702346 27702404 MER65A 464 + 277 338 92764 25 5 8 28 chain 3338 chr1 248956422 + 27708143 27708183 MSTB 430 + 390 430 96702 40 chain 45461 chr1 248956422 + 27713359 27713920 LTR19B 566 + 0 566 31333 273 0 4 58 1 0 33 0 3 107 1 0 34 0 1 21 3 2 30 chain 51153 chr1 248956422 + 27820606 27821167 L1PA3long 6157 + 5579 6147 29181 433 0 7 128 chain 57717 chr1 248956422 + 27829130 27829773 SVA_D 2077 + 1420 2077 27045 25 3 0 4 0 1 331 0 16 280 chain 23490 chr1 248956422 + 27837494 27837791 AluSc8 310 + 0 301 51603 10 4 0 99 0 5 18 0 3 166 chain 155963 chr1 248956422 + 27852174 27855103 SVA_F 1814 + 9 1814 12006 598 0 37 55 0 40 160 226 0 49 176 14 237 720 0 71 93 0 544 chain 6421 chr1 248956422 + 27853024 27853161 SVA_F 1814 + 937 1088 56869 10 1 15 126 chain 2532 chr1 248956422 + 27853161 27853189 SVA_F 1814 + 1264 1291 62945 10 1 0 17 chain 15601 chr1 248956422 + 27853265 27853437 SVA_F 1814 + 966 1138 42421 172 chain 6321 chr1 248956422 + 27853728 27853805 SVA_F 1814 + 914 1006 71787 33 0 15 44 chain 8312 chr1 248956422 + 27853805 27853904 SVA_F 1814 + 892 1006 67881 55 0 15 44 chain 26183 chr1 248956422 + 27853904 27854244 SVA_F 1814 + 892 1197 47455 55 0 15 47 50 0 188 chain 2105 chr1 248956422 + 27854009 27854056 SVA_F 1814 + 962 1009 49819 47 chain 3151 chr1 248956422 + 27854244 27854283 SVA_F 1814 + 972 1011 93494 39 chain 5052 chr1 248956422 + 27854283 27854339 SVA_F 1814 + 1089 1145 72717 56 chain 408 chr1 248956422 + 27854339 27854382 SVA_F 1814 + 855 898 60789 43 chain 2046 chr1 248956422 + 27854466 27854505 SVA_F 1814 + 1094 1132 55535 32 1 0 6 chain 2329 chr1 248956422 + 27854507 27854559 SVA_F 1814 + 1181 1233 49819 52 chain 10436 chr1 248956422 + 28022940 28023188 L1MC3 1789 + 1094 1321 69545 21 3 1 26 34 33 54 22 0 6 4 0 9 3 0 11 0 1 36 6 16 13 chain 3150 chr1 248956422 + 28070036 28070091 MLT1D 503 + 399 456 98362 24 7 9 24 chain 12023 chr1 248956422 + 28117885 28118032 L1P5 443 + 290 437 66811 147 chain 2961 chr1 248956422 + 28133510 28133542 LTR8A 794 + 571 603 100275 32 chain 5086 chr1 248956422 + 28151771 28151870 MLT1A1 405 + 238 344 85220 23 11 13 29 8 13 28 chain 3725 chr1 248956422 + 28240306 28240353 MER5A 189 + 32 76 93439 5 3 0 39 chain 37995 chr1 248956422 + 28254010 28255606 Tigger1 2417 + 1065 2094 36078 146 666 516 69 418 0 60 0 1 237 chain 25749 chr1 248956422 + 28294946 28295232 AluYb8 318 + 34 318 48095 29 2 0 255 chain 11050 chr1 248956422 + 28389791 28389999 L1MA6 2487 + 2104 2295 68487 107 34 21 28 4 3 13 2 0 15 1 0 4 chain 6359 chr1 248956422 + 28413030 28413132 MER1B 344 + 234 344 79812 23 11 19 30 0 1 4 1 0 33 chain 3443 chr1 248956422 + 28447311 28447350 MSTA 426 + 385 424 95703 39 chain 2581 chr1 248956422 + 28491495 28491559 MER5B 177 + 92 153 103104 19 19 17 11 1 0 14 chain 5257 chr1 248956422 + 28497606 28497668 MER51B 395 + 235 296 84405 10 1 0 51 chain 17401 chr1 248956422 + 28507364 28507568 U17 202 + 0 202 59349 14 1 0 73 1 0 115 chain 18823 chr1 248956422 + 28508557 28508759 U17 202 + 0 202 57748 202 chain 30102 chr1 248956422 + 28586014 28586441 LTR7B 505 + 2 505 41942 106 0 10 37 0 1 19 0 38 12 10 34 19 0 2 71 1 4 7 1 0 79 14 13 51 chain 3653 chr1 248956422 + 28619586 28619626 MER50B 698 + 494 534 94008 40 chain 5363 chr1 248956422 + 28621671 28621759 LTR23 429 + 311 397 83893 32 1 0 6 9 8 40 chain 4867 chr1 248956422 + 28628398 28628469 L1MB8 1703 + 1515 1588 86336 47 3 5 21 chain 21481 chr1 248956422 + 28684591 28684850 L1PA8A 6298 + 6032 6290 54539 154 1 0 104 chain 29444 chr1 248956422 + 28695656 28695967 AluYa5 310 + 0 310 42681 123 1 0 187 chain 22051 chr1 248956422 + 28761459 28761735 AluSp 311 + 5 285 53763 32 5 4 211 0 5 28 chain 25098 chr1 248956422 + 28851589 28851880 AluSp 311 + 0 307 49119 220 0 16 71 chain 5622 chr1 248956422 + 28905626 28905700 MLT1A 405 + 314 388 82700 23 1 0 11 0 1 39 chain 4601 chr1 248956422 + 28962364 28962417 MADE1 96 + 42 95 87788 53 chain 5418 chr1 248956422 + 28982644 28982721 Ricksha_0 1343 + 954 1035 83614 24 1 6 46 1 0 5 chain 5528 chr1 248956422 + 29034767 29034885 L1MA8 2339 + 2160 2268 83113 36 7 1 30 13 10 19 1 0 12 chain 21937 chr1 248956422 + 29158839 29159104 AluSg7 307 + 0 279 53921 77 0 15 40 1 0 147 chain 4429 chr1 248956422 + 29211366 29211508 MER58A 224 + 53 201 88745 32 79 85 31 chain 3102 chr1 248956422 + 29255468 29255504 MIR 256 + 73 109 98772 36 chain 8258 chr1 248956422 + 29302052 29302145 Tigger3b 1229 + 425 518 74267 93 chain 73382 chr1 248956422 + 29359332 29360290 LTR5_Hs 974 + 0 974 23240 115 5 13 41 1 0 120 0 1 177 0 1 188 1 0 123 11 14 26 8 15 27 12 10 103 chain 2961 chr1 248956422 + 29396589 29396626 MIR 256 + 107 144 100272 37 chain 4055 chr1 248956422 + 29643989 29644174 MER58A 224 + 1 187 91054 23 27 26 27 87 89 21 chain 22299 chr1 248956422 + 29654561 29654915 MSTA 426 + 22 388 53410 81 0 2 23 2 1 9 5 12 54 6 0 8 0 4 20 15 13 51 9 17 71 chain 72788 chr1 248956422 + 29656947 29657747 L1PA2 6032 + 5228 6032 23362 787 0 4 13 chain 40850 chr1 248956422 + 29715688 29716197 MER9a3 513 + 0 513 34059 17 0 3 90 0 1 145 1 0 177 2 3 77 chain 31452 chr1 248956422 + 29794200 29794724 MLT2A1 477 + 0 477 40771 41 0 1 100 0 1 26 1 5 150 1 0 46 122 70 37 chain 391122 chr1 248956422 + 29794724 29799579 HERVL-int 5654 + 0 5654 5304 52 0 1 305 3 2 139 0 1 96 0 2 57 1 0 302 5 10 156 0 1 379 106 95 191 0 1 957 3 4 478 12 13 1232 1 799 161 0 1 64 0 1 20 1 0 28 1 0 99 0 1 6 chain 30485 chr1 248956422 + 29799583 29800046 MLT2A1 477 + 4 477 41591 120 0 1 15 0 1 28 1 5 150 1 0 31 5 9 21 8 0 16 35 44 32 chain 3415 chr1 248956422 + 29887381 29887448 MER66-int 1576 + 264 330 95957 22 14 13 31 chain 48680 chr1 248956422 + 29887485 29888050 L1PA7 6471 + 5902 6470 30059 176 0 1 57 0 1 319 1 2 12 chain 26565 chr1 248956422 + 29922875 29923277 MSTA 426 + 0 414 46880 103 0 2 24 1 0 14 0 7 54 6 0 7 3 7 18 15 13 51 9 17 97 chain 43404 chr1 248956422 + 29985408 29986157 LTR66 600 + 0 578 32500 348 142 0 55 12 0 42 0 1 11 3 20 12 1 0 1 34 0 88 chain 248889 chr1 248956422 + 29995387 29998390 L1PA5 6144 + 552 5767 8273 30 1 0 229 0 17 126 25 0 211 13 4 66 1 0 544 21 2247 632 1 0 360 1 0 345 0 7 397 chain 8265 chr1 248956422 + 30031965 30032065 LOR1a 498 + 0 100 74253 100 chain 10202 chr1 248956422 + 30109435 30109620 L1PB1 5432 + 5236 5400 70007 44 1 0 16 3 0 6 16 6 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 9 chain 7192 chr1 248956422 + 30116365 30116457 MLT1A0 366 + 274 366 76970 92 chain 26781 chr1 248956422 + 30203677 30204055 LTR7B 505 + 0 495 46569 105 0 10 56 13 81 59 0 41 89 14 13 20 0 1 10 2 0 10 chain 48933 chr1 248956422 + 30206635 30207275 HERVH-int 3825 + 3186 3825 29971 55 26 25 559 chain 25978 chr1 248956422 + 30208729 30209113 LTR7B 505 + 0 505 47753 94 0 3 8 0 10 56 18 31 34 1 21 21 0 74 17 0 1 71 14 13 20 0 1 30 chain 53331 chr1 248956422 + 30209135 30210186 MER4E1 777 + 0 759 28459 18 1 2 65 0 3 90 30 23 61 0 1 64 5 24 115 309 0 293 chain 31356 chr1 248956422 + 30211637 30212149 MLT2A2 560 + 0 560 40843 118 100 99 88 1 34 67 0 11 63 0 1 69 0 4 6 chain 16739 chr1 248956422 + 30282743 30282965 MER30 238 + 0 238 60110 107 4 20 111 chain 38626 chr1 248956422 + 30296560 30297142 MER41C 542 + 0 527 35623 163 5 7 151 78 21 185 chain 24706 chr1 248956422 + 30297342 30297735 MSTA 426 + 0 403 49719 98 1 2 30 16 21 52 7 12 12 37 36 140 chain 90621 chr1 248956422 + 30309181 30310170 L1PA3long 6157 + 5168 6157 19569 989 chain 54543 chr1 248956422 + 30346368 30347014 SVA_A 1864 + 1245 1864 28028 70 40 12 388 0 1 148 chain 125100 chr1 248956422 + 30436567 30438128 THE1A-int 1579 + 0 1573 14684 568 1 0 91 0 1 4 1 0 488 5 17 273 0 1 130 chain 529471 chr1 248956422 + 30438372 30444125 L1PA2 6032 + 2 6031 1854 119 0 275 432 0 2 2334 1 0 2867 chain 10187 chr1 248956422 + 30444163 30444296 THE1A 353 + 220 353 70040 8 0 1 5 2 1 118 chain 51652 chr1 248956422 + 30481520 30482153 LTR14B 630 + 0 630 28984 349 4 0 229 15 16 36 chain 528009 chr1 248956422 + 30493389 30499378 L1PA4 6152 + 0 5973 1912 580 1 0 256 17 0 604 1 0 446 0 1 181 1 0 1425 1 2 195 0 1 679 0 1 1602 chain 31180 chr1 248956422 + 30562606 30563099 MER51E 476 + 0 476 40995 237 74 68 103 6 1 6 2 0 17 7 3 41 chain 87490 chr1 248956422 + 30567813 30568750 L1HS 6032 + 5079 6016 20137 937 chain 22594 chr1 248956422 + 30574993 30575354 THE1B 368 + 1 368 52994 168 1 0 21 18 25 15 1 0 12 1 0 62 37 39 25 chain 144901 chr1 248956422 + 30577873 30579461 L1PA3long 6157 + 4562 6150 12699 1588 chain 2942 chr1 248956422 + 30680150 30680185 MER52A 1651 + 784 818 100492 6 1 0 28 chain 4730 chr1 248956422 + 30728681 30728734 LTR16E1 515 + 431 484 87079 53 chain 41139 chr1 248956422 + 30845434 30845980 MER41A 554 + 10 554 33890 183 1 0 40 10 6 191 0 1 84 4 5 16 0 1 17 chain 27026 chr1 248956422 + 30862270 30862632 Tigger3b 1229 + 215 580 46234 55 0 4 21 1 0 33 1 4 47 0 1 170 1 0 18 3 0 12 chain 12331 chr1 248956422 + 31017418 31017635 MER30 238 + 0 238 66250 16 13 31 62 4 0 7 4 0 12 0 10 49 5 6 45 chain 24938 chr1 248956422 + 31035473 31035774 AluSp 311 + 4 305 49370 301 chain 6605 chr1 248956422 + 31084728 31085843 MER49 923 + 255 733 78960 72 0 1 4 1007 369 32 chain 3998 chr1 248956422 + 31166404 31166492 MER20 218 + 0 86 91463 13 23 27 39 6 0 7 chain 8207 chr1 248956422 + 31172323 31172427 LTR8 732 + 277 381 74393 104 chain 161079 chr1 248956422 + 31175769 31177659 SVA_D 2077 + 6 2077 11678 12 1 7 11 17 0 9 1 0 507 0 1 2 0 40 289 0 83 69 0 2 157 49 0 108 0 98 522 0 20 116 2 0 18 chain 3420 chr1 248956422 + 31176844 31176893 SVA_D 2077 + 1017 1068 37702 19 0 2 30 chain 21726 chr1 248956422 + 31202417 31202693 AluY 311 + 22 301 54199 110 1 2 134 0 1 7 5 6 19 chain 3139 chr1 248956422 + 31400274 31400311 L1MB7 1623 + 1386 1423 98474 37 chain 34753 chr1 248956422 + 31457948 31458519 LTR10E 629 + 0 561 38185 21 4 0 81 1 0 62 0 2 45 0 19 66 5 4 22 1 0 71 40 14 48 13 14 8 0 1 10 21 21 52 chain 34638 chr1 248956422 + 31466684 31467248 LTR10E 629 + 0 557 38260 102 1 0 62 0 2 62 0 2 84 23 5 107 14 18 11 53 54 40 0 3 5 chain 44248 chr1 248956422 + 31480359 31480883 MER9a2 513 + 0 513 31984 259 16 5 249 chain 52977 chr1 248956422 + 31517856 31518481 HERVL-int 5654 + 5028 5654 28583 406 0 1 219 chain 33555 chr1 248956422 + 31518485 31518912 MLT2A1 477 + 4 470 39041 33 7 8 97 0 1 26 1 5 150 1 0 62 0 34 50 chain 59395 chr1 248956422 + 31565305 31566045 L1PA8 5853 + 5119 5853 26538 442 2 1 46 2 0 74 1 0 11 2 0 5 5 7 38 1 0 17 1 0 93 chain 23585 chr1 248956422 + 31838802 31839072 AluSp 311 + 11 297 51457 209 0 16 61 chain 6765 chr1 248956422 + 31889842 31889992 MLT1C 463 + 27 169 78428 6 2 0 72 50 44 20 chain 127069 chr1 248956422 + 31894042 31896153 L1PA16 3655 + 1763 3568 14412 26 40 30 57 1 5 118 11 11 293 8 4 252 2 1 5 0 1 71 0 1 24 15 14 110 3 12 54 0 7 24 0 9 6 1 0 19 2 0 6 318 0 59 0 2 220 1 0 86 3 1 81 4 5 191 chain 22928 chr1 248956422 + 31925472 31925771 AluY 311 + 0 294 52471 51 15 11 15 2 1 216 chain 24683 chr1 248956422 + 32098461 32098753 AluYk4 311 + 11 296 49758 121 1 0 101 6 0 63 chain 24617 chr1 248956422 + 32107462 32107761 AluSq10 312 + 8 312 49845 35 0 7 53 1 0 154 1 0 55 chain 24545 chr1 248956422 + 32285025 32285315 AluSp 311 + 4 296 49953 27 0 1 78 0 1 185 chain 27928 chr1 248956422 + 32405379 32405679 AluYa5 310 + 0 299 44987 132 1 0 167 chain 144567 chr1 248956422 + 32418704 32421481 HUERS-P3b-int 2065 + 13 2031 12723 81 4 0 26 20 0 11 12 24 140 4 0 13 81 6 116 624 0 115 7 0 33 3 0 196 1 0 54 1 0 27 1 0 127 0 4 223 2 1 10 0 1 250 1 0 44 25 2 82 0 2 13 1 0 25 1 0 89 3 1 50 0 1 21 2 0 19 4 1 59 22 18 43 2 1 89 chain 30663 chr1 248956422 + 32432336 32432749 LTR7 482 + 0 482 41411 68 31 18 15 0 50 74 4 36 221 chain 289996 chr1 248956422 + 32432751 32436378 HERVH-int 3825 + 0 3825 7127 336 1 0 39 0 1 154 1 0 11 1 0 4 0 1 24 2 1 9 1 0 10 4 0 13 7 1 13 2 1 13 3 0 13 15 12 42 0 20 61 0 1 4 2 0 69 2 0 373 15 0 203 9 0 29 0 2 10 1 0 616 8 13 44 0 4 706 0 1 198 27 29 39 8 218 260 0 2 225 chain 30413 chr1 248956422 + 32437637 32438025 LTR7 482 + 0 469 41665 68 18 18 15 0 50 79 0 31 208 chain 42520 chr1 248956422 + 32438130 32438828 MER4B 649 + 0 632 33053 24 20 23 65 1 0 4 16 17 41 0 1 11 2 0 174 0 2 19 55 5 33 11 1 38 7 3 112 6 0 59 chain 19486 chr1 248956422 + 32456072 32456385 MER66B 489 + 44 337 57050 139 12 11 47 31 9 11 0 4 23 1 0 49 chain 62517 chr1 248956422 + 32458577 32459471 MER11A 1151 + 159 1145 25748 71 1 0 64 0 11 21 0 2 203 0 13 107 0 1 21 17 20 10 3 4 38 0 4 22 13 12 31 1 2 18 1 59 43 6 5 6 0 1 46 3 4 87 4 3 57 chain 3071 chr1 248956422 + 32464015 32464049 MLT1C 463 + 134 168 99087 34 chain 29163 chr1 248956422 + 32484545 32484962 MSTA 426 + 2 426 43106 98 20 25 7 2 0 27 0 4 21 1 0 4 8 9 229 chain 21334 chr1 248956422 + 32516420 32516752 MER1B 344 + 0 344 54720 17 35 41 204 18 24 58 chain 15251 chr1 248956422 + 32626221 32626417 Tigger3a 397 + 167 374 61979 109 0 11 87 chain 2590 chr1 248956422 + 32626848 32626889 MER58B 340 + 75 114 103067 25 3 0 7 0 1 6 chain 8238 chr1 248956422 + 32639950 32640051 HY3 101 + 0 101 74312 101 chain 32766 chr1 248956422 + 32641993 32642752 MER4E1 777 + 5 461 39700 20 1 0 130 11 4 59 314 0 113 1 20 110 chain 78347 chr1 248956422 + 32666687 32667653 LTR13A 966 + 0 966 22016 128 0 1 192 0 1 69 3 5 25 4 0 241 2 0 6 0 2 29 0 1 180 1 0 86 chain 7307 chr1 248956422 + 32670370 32670470 MER85 139 + 0 116 76643 49 0 3 6 0 3 29 0 10 16 chain 25064 chr1 248956422 + 32687088 32687376 AluSq10 312 + 11 298 49177 122 1 0 165 chain 51657 chr1 248956422 + 32812318 32813323 MER4D0 881 + 147 868 28980 205 0 2 13 1 0 21 1 0 4 0 1 5 3 2 109 308 0 37 0 10 72 19 32 10 0 1 197 chain 24931 chr1 248956422 + 32838067 32838363 AluYk4 311 + 8 311 49381 129 11 18 156 chain 25095 chr1 248956422 + 32841455 32841753 AluSp 311 + 8 306 49122 298 chain 29844 chr1 248956422 + 33043702 33044174 LTR19A 502 + 0 502 42192 34 5 4 182 5 4 58 0 1 86 2 7 14 50 75 24 0 1 12 chain 136822 chr1 248956422 + 33051343 33053486 SVA_F 1814 + 335 1814 13356 564 274 0 49 0 15 168 49 0 117 356 0 566 chain 12397 chr1 248956422 + 33051944 33052132 SVA_F 1814 + 937 1091 43404 10 1 15 33 48 0 96 chain 4260 chr1 248956422 + 33051988 33052036 SVA_F 1814 + 1122 1170 60597 48 chain 2219 chr1 248956422 + 33052132 33052157 SVA_F 1814 + 1267 1291 60597 7 1 0 17 chain 4432 chr1 248956422 + 33052398 33052447 SVA_F 1814 + 891 940 47242 49 chain 10853 chr1 248956422 + 33052564 33052684 SVA_F 1814 + 1072 1191 47242 1 0 1 103 1 0 10 1 0 4 chain 15492 chr1 248956422 + 33052684 33052858 SVA_F 1814 + 1015 1187 49653 162 2 0 10 chain 75397 chr1 248956422 + 33063515 33064484 LTR5_Hs 974 + 0 974 22746 458 0 4 106 5 4 54 10 9 21 0 1 17 3 5 97 7 7 191 chain 44624 chr1 248956422 + 33064484 33065110 HERVK-int 6823 + 0 621 31777 5 1 0 17 1 0 20 1 0 20 7 6 6 1 0 26 2 1 20 1 0 12 2 0 32 0 5 132 1 0 4 0 1 148 1 0 166 chain 71139 chr1 248956422 + 33065702 33068370 HERVK11-int 2540 + 695 2093 23732 29 4 0 13 5 0 14 113 83 44 3 0 12 1442 261 23 29 25 14 10 0 15 1 0 25 12 1 28 25 8 53 1 4 372 16 11 107 1 0 179 15 14 63 chain 14358 chr1 248956422 + 33068487 33068692 LTR5B 1012 + 821 1012 63099 54 2 0 4 13 0 59 1 2 72 chain 11400 chr1 248956422 + 33223282 33223466 THE1B 368 + 174 368 67914 24 35 45 125 chain 3144 chr1 248956422 + 33226400 33226442 L1MB7 1623 + 1388 1429 98422 34 1 0 7 chain 208876 chr1 248956422 + 33448667 33451404 L1PB1 5432 + 2273 5014 9386 216 6 0 294 0 1 12 0 7 39 1 0 85 0 2 12 1 0 65 0 1 4 1 0 182 7 0 48 0 1 61 0 14 405 33 16 252 7 9 122 8 23 237 5 6 9 3 1 229 5 0 388 chain 30105 chr1 248956422 + 33502417 33502792 THE1C 375 + 0 375 41939 375 chain 8406 chr1 248956422 + 33592995 33593187 L1MB3 1562 + 1147 1316 73886 28 28 27 25 37 12 55 0 3 19 chain 512329 chr1 248956422 + 33671997 33677708 L1PA4 6152 + 0 5741 2652 127 0 14 238 0 7 850 0 1 649 0 1 138 0 1 175 0 2 1312 0 1 1958 0 3 264 chain 20413 chr1 248956422 + 33736256 33736494 AluY 311 + 57 298 55869 75 0 1 133 0 2 30 chain 84500 chr1 248956422 + 33796294 33797378 MER11A 1151 + 0 1115 20712 108 0 2 66 8 0 23 2 0 31 1 0 61 0 2 33 0 2 491 20 5 11 8 1 10 0 21 13 0 36 55 0 1 143 chain 554425 chr1 248956422 + 33829520 33835662 L1PA3long 6157 + 1 6157 452 2879 0 12 758 0 1 7 1 0 634 0 2 1863 chain 134821 chr1 248956422 + 33890572 33892059 L1PA3long 6157 + 4672 6157 13554 344 4 0 190 0 1 100 0 1 849 chain 7507 chr1 248956422 + 33904358 33904453 L1MB5 1630 + 1214 1309 76115 95 chain 8112 chr1 248956422 + 33923830 33923949 MER1B 344 + 214 339 74610 53 7 14 48 1 0 10 chain 27180 chr1 248956422 + 34068682 34069017 THE1B 368 + 4 356 45997 36 0 15 109 0 2 190 chain 5146 chr1 248956422 + 34072103 34072161 HERV9-int 5642 + 4084 4142 84927 58 chain 26402 chr1 248956422 + 34077191 34077478 AluYk11 308 + 16 303 47118 287 chain 125308 chr1 248956422 + 34081468 34083087 SVA_B 1603 + 71 1603 14654 218 0 18 124 116 0 232 37 0 120 0 3 91 1 43 14 0 1 12 0 1 94 10 9 117 0 4 425 2 0 6 chain 3066 chr1 248956422 + 34082158 34082195 SVA_B 1603 + 743 780 76691 37 chain 93578 chr1 248956422 + 34084338 34085373 L1PA4 6152 + 5098 6134 19101 102 0 1 933 chain 28526 chr1 248956422 + 34087285 34087612 L1PA7 6471 + 6124 6454 44076 211 0 3 116 chain 554557 chr1 248956422 + 34092394 34098413 L1PA2 6032 + 0 6019 440 257 1 0 107 0 1 5654 chain 7493 chr1 248956422 + 34112949 34113038 5S 121 + 1 90 76144 89 chain 4744 chr1 248956422 + 34174916 34175073 MER3 215 - 0 162 86990 41 88 92 23 0 1 5 chain 9130 chr1 248956422 + 34226802 34226913 MLT1A 405 + 294 405 72280 111 chain 40541 chr1 248956422 + 34236026 34236607 MER51A 677 + 0 661 34278 179 22 20 17 11 39 48 2 33 58 0 30 160 7 0 77 chain 545807 chr1 248956422 + 34250748 34256765 L1PA3long 6157 + 6 6157 982 146 0 1 563 0 1 59 0 128 4021 0 1 1081 0 1 142 0 2 5 chain 52142 chr1 248956422 + 34293965 34294553 L1PA5 6144 + 5555 6142 28832 330 1 0 257 chain 21405 chr1 248956422 + 34294680 34295016 L1PA16 3655 + 3248 3587 54629 37 18 16 100 16 24 153 3 0 9 chain 6483 chr1 248956422 + 34451070 34451142 MER5A 189 + 0 72 79396 72 chain 4021 chr1 248956422 + 34464620 34464693 LTR16E2 555 + 460 534 91302 32 15 16 26 chain 218788 chr1 248956422 + 34488818 34492064 L1PA11 4918 + 1637 4567 9072 176 0 1 233 1 0 200 8 12 281 10 0 187 1 2 16 14 13 205 1 0 139 1 7 11 3 4 22 5 10 214 3 0 5 5 8 283 1 0 35 7 16 206 316 0 4 0 1 7 7 0 18 1 9 51 0 1 320 0 1 43 0 3 11 3 2 13 2 0 67 2 0 14 1 0 20 4 0 9 4 1 15 12 6 15 1 0 13 chain 26352 chr1 248956422 + 34507513 34507815 AluYa5 310 + 0 299 47198 97 3 1 34 6 5 162 chain 15771 chr1 248956422 + 34514634 34514897 L1PREC2 3366 + 2613 2867 61322 104 3 0 35 2 0 30 11 12 12 4 3 41 7 3 14 chain 26853 chr1 248956422 + 34517240 34517595 L1PA8A 6298 + 5923 6272 46469 84 0 1 170 16 10 74 2 1 9 chain 192606 chr1 248956422 + 34551716 34555256 L1PREC2 3366 + 139 3215 9991 31 1 0 9 3 1 20 7 2 7 1 0 24 1 0 8 5 0 7 1 0 9 2 0 31 2 1 103 0 1 12 6 5 60 2 1 181 0 4 190 5 6 12 358 55 275 0 1 108 10 16 19 0 2 47 11 12 45 17 16 115 9 6 41 0 3 59 0 1 91 44 16 333 12 7 28 4 7 252 0 2 296 1 0 19 0 1 11 7 4 54 4 3 21 0 6 14 1 0 4 3 0 13 52 39 15 3 1 29 4 1 11 26 12 31 18 13 32 3 1 11 220 133 19 chain 142609 chr1 248956422 + 34555683 34557369 L1PA8 5853 + 4174 5853 12883 836 2 0 375 0 2 177 1 0 45 2 0 70 1 0 9 1 0 52 2 1 19 2 1 92 chain 20557 chr1 248956422 + 34596542 34596832 THE1A 353 + 65 353 55701 46 1 0 91 2 0 6 29 30 115 chain 4706 chr1 248956422 + 34672017 34672320 MER52D 1964 + 1113 1234 87231 24 111 23 28 85 0 19 22 13 14 chain 3897 chr1 248956422 + 34746274 34746317 MIRb 242 + 69 112 92148 43 chain 34445 chr1 248956422 + 34773216 34773665 L1PA8 5853 + 5409 5853 38402 157 1 0 21 0 2 20 2 0 69 2 1 10 2 1 50 2 1 19 1 0 93 chain 6994 chr1 248956422 + 34790335 34790424 L1MB2 1706 + 1598 1686 77621 13 1 0 75 chain 98607 chr1 248956422 + 34947612 34948768 SVA_B 1603 + 206 1603 18463 395 0 37 31 0 83 61 17 99 28 0 1 34 0 39 133 1 0 456 chain 240891 chr1 248956422 + 34955161 34957831 L1PA3long 6157 + 3500 6157 8453 854 0 4 155 0 1 280 1 0 1356 17 0 7 chain 32801 chr1 248956422 + 34957868 34958234 L1PA5 6144 + 5774 6141 39667 220 0 1 146 chain 35751 chr1 248956422 + 35042224 35042771 L1MA2 4263 + 3595 4111 37567 47 6 9 11 20 0 139 3 0 155 11 9 93 19 11 36 1 0 6 chain 6630 chr1 248956422 + 35054053 35054128 LTR10F 562 + 0 75 78871 75 chain 26381 chr1 248956422 + 35058418 35058829 LTR10F 562 + 61 554 47150 44 0 56 11 0 59 22 54 0 13 10 16 188 0 15 69 chain 12250 chr1 248956422 + 35058832 35058989 MER50 708 + 539 695 66369 63 1 0 93 chain 4627 chr1 248956422 + 35066871 35066954 L1MD 993 + 507 591 87658 33 1 0 4 11 13 34 chain 13618 chr1 248956422 + 35153361 35153549 MER34D 576 + 388 576 64142 143 1 0 11 7 8 26 chain 14279 chr1 248956422 + 35165099 35167149 L1MA7 2200 + 1356 1975 63222 39 0 1 70 1833 401 108 chain 6984 chr1 248956422 + 35195968 35196049 HY3 101 + 0 81 77656 81 chain 2745 chr1 248956422 + 35233218 35233255 Charlie1a 1436 + 270 306 102006 24 1 0 12 chain 10807 chr1 248956422 + 35336755 35337074 THE1C 375 + 0 315 68841 15 2 0 32 0 9 8 93 74 34 56 64 79 chain 120826 chr1 248956422 + 35464103 35465677 THE1B-int 1605 + 0 1605 15373 281 0 2 53 0 2 94 12 37 177 0 6 7 13 4 106 1 0 7 0 1 238 1 2 9 0 2 363 0 1 43 0 1 169 chain 28345 chr1 248956422 + 35465677 35466051 THE1B 368 + 0 368 44349 82 14 0 61 0 9 20 2 1 195 chain 52416 chr1 248956422 + 35476998 35478353 L1MA2 4263 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1452 1580 81804 29 33 45 54 chain 5994 chr1 248956422 + 36146969 36147042 MER51E 476 + 304 377 81104 73 chain 24370 chr1 248956422 + 36189091 36189382 AluSp 311 + 6 297 50210 85 0 3 38 3 0 165 chain 78093 chr1 248956422 + 36196782 36197868 LTR12C 1709 + 0 1708 22073 143 133 436 41 5 6 168 8 324 106 0 4 25 1 0 374 1 0 81 chain 11180 chr1 248956422 + 36196926 36197055 LTR12C 1709 - 1133 1262 68283 129 chain 23489 chr1 248956422 + 36206471 36206817 MER51B 395 + 0 395 51606 40 13 0 70 1 58 78 12 13 75 0 4 43 0 1 4 1 0 9 chain 21277 chr1 248956422 + 36219733 36219999 Tigger1 2417 + 966 1232 54799 266 chain 25245 chr1 248956422 + 36441469 36441772 AluY 311 + 3 304 48879 120 7 4 46 0 1 130 chain 3384 chr1 248956422 + 36476249 36476357 MIR 256 + 34 143 96233 15 56 57 37 chain 3942 chr1 248956422 + 36478886 36478952 MER58C 217 + 137 216 91818 35 9 22 22 chain 3798 chr1 248956422 + 36505233 36505292 MER2B 336 + 276 336 92858 12 6 7 41 chain 3878 chr1 248956422 + 36566607 36566653 LTR16C 481 + 419 465 92303 46 chain 8224 chr1 248956422 + 36648613 36648800 L1PB1 5432 + 5236 5404 74343 45 1 0 13 2 0 8 29 19 6 2 0 4 1 0 15 4 3 21 1 0 21 1 0 13 chain 7302 chr1 248956422 + 36658883 36659214 LTR33 499 + 147 499 76657 20 1 0 4 211 233 30 0 1 9 1 0 55 chain 18744 chr1 248956422 + 36745880 36746186 L1PB2 3958 + 3529 3838 57851 24 14 9 20 0 1 35 13 24 37 1 0 76 2 0 19 2 1 63 chain 66372 chr1 248956422 + 36758725 36759465 L1PA4 6152 + 5407 6152 24852 734 0 5 6 chain 3638 chr1 248956422 + 36774867 36774968 MIRb 242 + 20 123 94112 23 45 47 33 chain 10648 chr1 248956422 + 36842282 36842432 MER5A 189 + 14 165 69129 81 1 0 20 3 5 45 chain 20605 chr1 248956422 + 36917446 36917781 THE1B 368 + 0 368 55627 40 0 15 102 0 9 4 1 0 4 1 0 24 36 46 16 8 9 99 chain 180549 chr1 248956422 + 37079737 37082141 SVA_D 2077 + 0 2077 10564 8 10 0 18 0 3 739 40 0 139 14 13 27 11 0 34 98 25 30 0 2 55 1 0 102 39 0 189 1 0 4 24 0 13 4 0 64 128 0 612 chain 3181 chr1 248956422 + 37080777 37080826 SVA_D 2077 + 1130 1179 38288 49 chain 2660 chr1 248956422 + 37080826 37080855 SVA_D 2077 + 1306 1335 63939 29 chain 10265 chr1 248956422 + 37081401 37081529 SVA_D 2077 + 1240 1367 36824 107 1 0 20 chain 11358 chr1 248956422 + 37196743 37196924 MER30 238 + 70 238 67998 37 4 24 62 33 0 45 chain 24639 chr1 248956422 + 37200764 37201283 L1PB1 5432 + 4981 5424 49817 64 0 1 6 2 1 50 9 0 14 3 0 8 37 3 12 1 0 7 16 11 9 2 0 53 2 1 16 1 0 38 0 1 4 1 0 16 3 0 15 8 0 16 8 5 14 2 0 24 1 0 21 1 0 11 1 0 18 1 0 4 chain 506949 chr1 248956422 + 37207941 37213991 L1PA3long 6157 + 2 6157 2890 92 0 526 629 3 0 1070 0 1 1568 0 9 1410 1 0 668 434 0 17 0 7 158 chain 3261 chr1 248956422 + 37223411 37223448 L1MB2 1706 + 1635 1672 97371 37 chain 23399 chr1 248956422 + 37269100 37269609 L1PB1 5432 + 4978 5427 51758 36 24 0 66 1 4 19 1 0 10 1 0 25 10 8 11 6 2 8 2 0 53 2 1 10 6 5 41 4 3 16 3 0 6 17 6 19 27 22 21 1 0 21 1 0 13 5 2 16 2 0 5 chain 31910 chr1 248956422 + 37335014 37335385 L1PA8A 6298 + 5918 6289 40402 4 1 0 261 0 1 105 chain 29236 chr1 248956422 + 37365043 37365418 MLT2A1 477 + 9 395 42989 50 0 2 81 0 1 25 1 5 208 0 4 10 chain 469411 chr1 248956422 + 37365527 37371193 HERVL-int 5654 + 0 5654 3877 478 3 6 634 5 0 59 0 1 218 0 1 382 1 0 568 0 1 556 0 2 387 0 4 58 0 3 1728 0 1 123 2 0 14 32 5 130 0 4 37 14 16 201 6 7 30 chain 31115 chr1 248956422 + 37371200 37371640 MLT2A1 477 + 7 477 41047 108 1 0 4 0 1 22 0 1 25 1 5 30 0 18 164 20 0 10 2 30 33 1 0 19 chain 6296 chr1 248956422 + 37405698 37405771 L1PA3long 6157 + 5854 5930 80018 13 0 3 60 chain 20089 chr1 248956422 + 37405771 37405997 L1PA3long 6157 + 5931 6156 56271 221 1 0 4 chain 30321 chr1 248956422 + 37417250 37417910 Tigger3b 1229 + 205 827 41740 20 1 0 15 12 18 37 15 14 29 10 2 43 0 3 185 19 15 13 50 1 19 35 38 25 1 3 12 40 52 16 1 0 62 chain 116060 chr1 248956422 + 37518068 37519559 LTR12C 1709 + 0 1709 16223 309 0 1 4 1 0 478 1 319 6 2 0 107 0 4 312 102 0 169 chain 13792 chr1 248956422 + 37549815 37550014 L1MD1 2063 + 1061 1262 63894 69 15 17 115 chain 16354 chr1 248956422 + 37569760 37570054 THE1B 368 + 0 306 60568 21 0 6 97 11 14 4 1 0 27 1 0 17 21 28 10 21 19 63 chain 6683 chr1 248956422 + 37580920 37580994 MER72 723 + 621 695 78691 74 chain 33580 chr1 248956422 + 37738720 37739158 L1PA6 6164 + 5723 6162 39019 67 6 8 34 1 0 330 chain 6420 chr1 248956422 + 37744132 37744231 L1MB7 1623 + 809 905 79604 59 7 4 33 chain 10692 chr1 248956422 + 37818138 37818298 MSTC 436 + 18 219 69055 56 1 0 4 2 3 17 0 17 33 1 25 46 chain 7615 chr1 248956422 + 37824197 37824344 MER58A 224 + 45 195 75837 33 39 42 75 chain 6973 chr1 248956422 + 37885022 37885107 U6 107 + 0 85 77705 85 chain 168489 chr1 248956422 + 37895478 37897739 SVA_D 2077 + 24 2068 11187 14 24 0 687 0 3 33 3 0 130 36 79 17 0 51 60 127 0 149 53 0 21 77 0 116 1 0 4 24 0 13 4 0 44 1 0 623 chain 2509 chr1 248956422 + 37896369 37896401 SVA_D 2077 + 1287 1320 60927 28 0 1 4 chain 2050 chr1 248956422 + 37896482 37896521 SVA_D 2077 + 913 945 38735 3 3 1 22 5 0 6 chain 4156 chr1 248956422 + 37896521 37896574 SVA_D 2077 + 1489 1542 60927 53 chain 2786 chr1 248956422 + 37896758 37896811 SVA_D 2077 + 1071 1120 38735 4 4 0 45 chain 3123 chr1 248956422 + 37896832 37896866 SVA_D 2077 + 1493 1527 69295 34 chain 1138 chr1 248956422 + 37896866 37896897 SVA_D 2077 + 948 979 66949 31 chain 27453 chr1 248956422 + 37903066 37903444 MER41A 554 + 0 381 45634 87 5 6 32 1 0 77 0 1 24 1 2 140 1 2 10 chain 143898 chr1 248956422 + 37904891 37907471 MER41-int 2638 + 678 2636 12778 46 3 5 75 0 1 4 1 15 87 323 0 221 0 1 80 0 1 17 6 8 84 0 1 148 0 1 79 0 1 5 6 5 106 1 0 27 4 6 222 1 0 104 3 0 6 1 0 20 327 6 95 0 1 313 3 4 78 1 2 83 chain 25342 chr1 248956422 + 37907814 37908186 LTR7B 505 + 0 490 48721 105 0 10 56 13 81 37 2 1 21 0 41 55 0 1 4 1 0 29 14 13 20 0 1 15 chain 46724 chr1 248956422 + 37910894 37911534 HERVH-int 3825 + 3186 3825 30762 57 33 32 135 39 39 376 chain 25194 chr1 248956422 + 37913788 37914158 LTR7B 505 + 0 490 48953 35 0 2 68 0 10 56 11 76 10 0 2 52 0 41 89 17 16 17 0 1 15 chain 3079 chr1 248956422 + 37914173 37914208 MER41A 554 + 332 367 98993 35 chain 11398 chr1 248956422 + 37914224 37914397 MER41A 554 + 380 554 67918 50 0 1 27 0 5 7 19 14 70 chain 265896 chr1 248956422 + 37970322 37974243 L1PA5 6144 + 2443 6144 7801 134 0 2 335 0 1 234 1 3 6 3 0 18 2 0 48 1 0 23 0 5 257 1 0 46 3 4 111 1 0 5 1 0 20 0 1 75 0 1 529 0 1 303 16 0 402 797 590 542 2 0 5 chain 5005 chr1 248956422 + 37991472 37991527 U6 107 + 11 66 85636 55 chain 8383 chr1 248956422 + 38106011 38106115 MER63A 208 + 51 155 73939 104 chain 34985 chr1 248956422 + 38144394 38144849 MLT2A1 477 + 0 477 38024 138 0 1 25 6 10 164 2 0 44 0 2 8 1 0 28 0 18 39 chain 475869 chr1 248956422 + 38144849 38150489 HERVL-int 5654 + 0 5654 3725 185 0 1 759 2 8 377 5 4 411 8 7 670 0 5 119 0 2 146 2 1 519 0 1 618 18 16 887 0 5 18 6 0 250 5 6 71 0 1 140 2 0 286 0 5 136 chain 31717 chr1 248956422 + 38150489 38150922 MLT2A1 477 + 0 477 40563 28 0 5 104 0 1 27 7 11 109 2 6 94 3 29 53 0 4 6 chain 96083 chr1 248956422 + 38199604 38200843 HSMAR2 1300 + 51 1295 18766 228 0 1 58 0 1 429 0 1 22 1 0 182 0 1 4 1 0 97 1 0 126 20 20 10 0 4 60 chain 20996 chr1 248956422 + 38223864 38224211 THE1B 368 + 0 368 55130 44 0 15 45 2 0 65 2 0 5 2 3 21 35 45 63 14 13 49 chain 27275 chr1 248956422 + 38237479 38237842 THE1C 375 + 0 360 45860 125 13 10 37 0 1 177 1 0 10 chain 99934 chr1 248956422 + 38311751 38313200 L1PA16 3655 + 2227 3619 18308 6 1 0 208 44 9 148 6 0 6 0 1 37 3 0 4 0 1 27 1 0 208 3 7 14 5 4 15 1 0 133 0 1 38 8 10 186 2 0 90 0 2 6 3 1 45 0 1 142 3 0 9 19 10 6 5 0 17 chain 16414 chr1 248956422 + 38356126 38356342 THE1B 368 + 153 368 60499 19 3 2 194 chain 15607 chr1 248956422 + 38378864 38379128 MER44A 345 + 68 345 61523 33 7 0 8 5 24 54 0 1 80 11 10 15 0 1 20 4 5 19 1 0 7 chain 3253 chr1 248956422 + 38393110 38393146 MER94 134 + 62 98 97455 36 chain 369787 chr1 248956422 + 38403986 38409324 L1PB1 5432 + 91 5415 5664 64 10 27 58 81 96 284 108 14 417 1 2 334 11 16 83 0 1 226 0 2 176 10 14 331 0 3 38 7 8 84 3 5 118 7 0 6 1 13 13 5 6 112 3 0 5 0 3 20 0 3 63 8 48 50 0 1 130 0 1 324 4 5 258 0 1 179 8 11 218 14 15 13 7 8 447 1 2 181 1 3 82 0 1 98 2 1 290 1 2 9 3 0 24 1 0 4 4 3 13 5 1 9 3 1 48 4 5 13 2 1 45 1 0 12 73 55 22 1 0 22 1 0 7 6 5 11 chain 18522 chr1 248956422 + 38409768 38410119 THE1B 368 + 0 356 58079 15 2 0 28 5 6 56 17 18 44 71 76 113 chain 29785 chr1 248956422 + 38425113 38425524 LTR7 482 + 0 482 42252 69 8 46 109 8 40 25 6 7 186 chain 286164 chr1 248956422 + 38425526 38429109 HERVH-int 3825 + 0 3825 7254 333 1 0 39 4 6 152 1 0 40 1 0 7 1 0 15 24 12 14 1 38 27 2 0 15 2 1 10 23 2 68 1 0 19 0 8 420 14 0 120 4 0 339 4 31 299 0 10 112 0 3 930 9 11 39 0 210 265 5 7 223 chain 30132 chr1 248956422 + 38430368 38430779 LTR7 482 + 0 482 41905 69 8 46 109 8 40 25 6 7 186 chain 3388 chr1 248956422 + 38641289 38641327 MLT2B2 565 + 526 564 96211 38 chain 137332 chr1 248956422 + 38646767 38648327 SVA_D 2077 + 0 2077 13314 19 5 0 16 3 1 762 0 163 30 0 2 9 0 1 31 1 4 15 0 1 37 1 354 4 0 1 627 chain 48317 chr1 248956422 + 38666751 38667273 L1PA3long 6157 + 5184 5706 30176 522 chain 49200 chr1 248956422 + 38725271 38725865 LTR10C 591 + 0 591 29868 260 5 0 79 0 1 164 5 7 21 1 0 59 chain 4650 chr1 248956422 + 38761764 38761817 MER31B 477 + 404 457 87534 53 chain 264249 chr1 248956422 + 38768417 38771346 L1PA4 6152 + 3217 6152 7846 2504 0 1 419 0 5 6 chain 3187 chr1 248956422 + 38787968 38788030 MER3 215 + 146 199 98015 9 7 0 8 2 0 36 chain 6680 chr1 248956422 + 38798949 38799049 L1MA3 4352 + 4235 4332 78704 23 0 1 23 1 0 6 1 0 28 1 0 12 1 0 4 chain 79962 chr1 248956422 + 38844669 38845623 L1PA7 6471 + 5501 6458 21634 118 1 4 623 1 0 62 1 2 148 chain 5631 chr1 248956422 + 38895264 38895336 MER41A 554 + 395 468 82657 67 0 1 5 chain 17319 chr1 248956422 + 38949047 38949427 L1PB1 5432 + 5062 5404 59435 41 21 11 20 1 0 12 1 0 12 4 0 8 6 4 50 2 1 11 5 4 45 1 0 15 3 0 6 16 6 14 30 28 20 1 0 22 1 0 12 chain 6416 chr1 248956422 + 38981704 38981790 LOR1b 457 + 0 95 79616 31 1 10 54 chain 25983 chr1 248956422 + 39021953 39022272 HSMAR2 1300 + 4 323 47740 319 chain 25047 chr1 248956422 + 39119045 39119338 AluSp 311 + 9 303 49194 128 1 2 164 chain 15033 chr1 248956422 + 39536715 39537057 L1MB8 1703 + 1429 1701 62222 6 2 0 146 78 28 15 9 0 38 3 0 14 14 8 17 chain 8494 chr1 248956422 + 39554026 39554226 MLT1C 463 + 204 421 73688 17 1 3 19 1 4 16 67 79 79 chain 3166 chr1 248956422 + 39587790 39587827 MER31A 484 + 0 37 98236 37 chain 26156 chr1 248956422 + 39606451 39606730 AluYa5 310 + 20 299 47491 279 chain 31596 chr1 248956422 + 39737559 39737966 LTR46 455 + 9 411 40672 179 3 1 26 0 1 24 3 0 124 1 0 47 chain 109870 chr1 248956422 + 39807677 39808954 SVA_B 1603 + 0 1603 17090 22 0 26 21 14 1 365 0 192 237 0 84 45 0 37 573 chain 118939 chr1 248956422 + 39869068 39870526 SVA_B 1603 + 6 1603 15716 16 24 6 14 6 5 145 5 4 403 0 37 177 26 108 29 0 40 147 9 10 8 1 0 448 chain 25355 chr1 248956422 + 39888278 39888568 AluSp 311 + 0 293 48694 91 0 3 199 chain 38365 chr1 248956422 + 39979585 39980203 LTR9B 643 + 23 643 35803 33 8 13 4 1 0 4 1 0 52 8 9 62 7 6 19 5 6 102 4 3 85 29 30 137 17 15 40 chain 142295 chr1 248956422 + 39999076 40000636 SVA_F 1814 + 5 1814 12912 881 0 2 10 2 1 26 5 245 327 0 1 191 4 11 114 chain 12545 chr1 248956422 + 40011084 40011264 L1MA4A 3247 + 2954 3130 65908 14 3 0 139 1 0 23 chain 10858 chr1 248956422 + 40081578 40081762 THE1B 368 + 166 368 68763 32 1 0 4 10 13 13 6 14 55 2 0 9 0 10 52 chain 21942 chr1 248956422 + 40081762 40082029 THE1B-int 1605 + 0 268 53915 48 0 1 219 chain 15611 chr1 248956422 + 40083508 40083779 Tigger1 2417 + 1310 1585 61519 17 5 6 65 6 7 72 33 35 73 chain 77096 chr1 248956422 + 40084571 40085570 LTR13 1007 + 0 1007 22291 73 2 0 308 8 9 238 2 1 70 6 13 196 0 5 62 3 1 31 chain 15988 chr1 248956422 + 40096407 40096708 Tigger4b 360 + 1 356 61038 11 0 1 14 7 0 13 13 30 50 0 32 111 8 11 14 29 37 31 chain 14223 chr1 248956422 + 40110430 40110850 L1PA16 3655 + 846 1073 63302 16 192 0 7 2 0 106 12 12 31 5 6 49 chain 5053 chr1 248956422 + 40137609 40137701 L1MB2 1706 + 764 859 85398 14 6 8 35 4 5 33 chain 56550 chr1 248956422 + 40166354 40167002 L1PA5 6144 + 5492 6132 27408 108 8 0 532 chain 22418 chr1 248956422 + 40195174 40195463 AluSg4 309 + 7 294 53242 12 7 6 254 2 1 14 chain 23153 chr1 248956422 + 40278338 40278586 AluY 311 + 62 311 52138 70 0 1 178 chain 495729 chr1 248956422 + 40365527 40370869 L1PA2 6032 + 1 6032 3276 95 0 688 2178 0 1 3069 chain 120710 chr1 248956422 + 40387671 40389155 LTR12C 1709 + 0 1709 15406 186 7 9 313 0 1 210 0 118 116 5 115 23 1 0 21 1 0 5 3 1 98 8 12 18 4 0 315 1 0 66 1 0 82 chain 4559 chr1 248956422 + 40402788 40402839 L1MA4 2864 + 2535 2586 88021 51 chain 30902 chr1 248956422 + 40445496 40445958 LTR10B 488 + 0 462 41216 43 9 10 27 5 1 9 26 20 129 3 13 170 1 0 40 chain 87654 chr1 248956422 + 40471746 40472757 LTR5A 1029 + 0 1029 20105 112 0 3 19 0 13 804 0 2 76 chain 25544 chr1 248956422 + 40487246 40487763 Tigger2b_Pri 1066 + 21 541 48420 54 6 5 178 43 49 73 121 119 42 chain 11161 chr1 248956422 + 40505770 40505936 THE1B 368 + 0 164 68325 64 24 22 78 chain 12513 chr1 248956422 + 40520292 40520453 MLT2A2 560 + 384 560 65968 22 0 11 106 0 4 33 chain 21689 chr1 248956422 + 40521228 40521896 Tigger1 2417 + 1718 2087 54240 212 49 50 18 14 7 10 294 0 11 1 2 59 chain 82287 chr1 248956422 + 40526707 40527657 L1PA6 6164 + 5212 6162 21181 950 chain 41932 chr1 248956422 + 40565213 40565681 L1PA4 6152 + 5672 6140 33408 468 chain 81974 chr1 248956422 + 40572025 40572994 LTR5_Hs 974 + 0 974 21248 285 0 1 126 1 0 407 8 15 37 2 0 103 chain 13683 chr1 248956422 + 40576680 40576892 L1PA8 5853 + 5638 5853 64033 23 24 28 5 0 1 44 3 2 19 1 0 93 chain 155000 chr1 248956422 + 40577362 40579131 L1PA6 6164 + 4392 6162 12057 287 1 0 639 0 4 162 1 0 526 0 1 145 2 0 6 chain 16258 chr1 248956422 + 40632228 40632505 Tigger3d 321 + 13 256 60670 21 7 9 5 2 0 154 47 13 41 chain 14187 chr1 248956422 + 40731793 40731971 MER6A 605 + 365 544 63335 126 0 1 52 chain 18404 chr1 248956422 + 40867647 40867936 Tigger3b 1229 + 640 958 58239 57 16 31 37 10 9 18 0 15 66 1 5 69 4 0 11 chain 9606 chr1 248956422 + 40907206 40907341 MER21A 919 + 34 175 71254 47 4 5 40 0 6 26 1 0 17 chain 27857 chr1 248956422 + 40957680 40957992 AluYk4 311 + 0 309 45100 132 3 0 177 chain 29793 chr1 248956422 + 40959219 40959662 LTR7B 505 + 0 505 42238 93 0 31 65 35 13 32 1 56 151 14 13 20 0 1 7 2 0 23 chain 14615 chr1 248956422 + 41064241 41064623 L1MC1 2226 + 108 475 62782 31 9 1 26 17 16 21 0 2 7 2 0 52 24 25 22 89 83 23 1 0 58 chain 258782 chr1 248956422 + 41082239 41085136 L1PA3long 6157 + 1666 6157 8002 379 11 1604 2358 0 1 149 chain 216508 chr1 248956422 + 41091068 41093522 L1PA5 6144 + 3664 6135 9132 411 0 1 225 0 14 225 1 0 633 7 8 790 0 2 162 chain 81420 chr1 248956422 + 41117066 41118061 LTR13 1007 + 0 999 21353 73 2 0 308 4 5 28 0 1 400 0 1 81 1 0 11 0 5 62 2 1 23 chain 107132 chr1 248956422 + 41133321 41134597 L1PA6 6164 + 3035 4326 17419 182 1 0 23 0 2 237 0 4 785 1 11 47 chain 540162 chr1 248956422 + 41176264 41182358 L1PA4 6152 + 0 6151 1330 612 0 2 152 0 8 462 0 1 355 0 1 608 0 4 841 0 20 17 1 0 94 1 0 75 0 4 989 0 18 1883 0 1 4 chain 2765 chr1 248956422 + 41188436 41188465 MER3 215 - 16 45 101855 29 chain 46027 chr1 248956422 + 41203510 41204019 MER9a2 513 + 0 513 31049 452 0 4 57 chain 505431 chr1 248956422 + 41205076 41212170 L1PA6 6164 + 3 6161 2947 189 3 4 190 73 26 155 1 0 36 0 1 25 0 68 209 0 4 272 1 0 323 7 11 269 19 21 292 0 1 497 0 3 114 704 14 626 5 19 723 1 6 261 0 4 203 4 5 69 1 0 124 0 1 130 1 0 4 0 1 206 308 0 243 2 0 132 0 3 515 2 0 5 6 8 44 0 3 91 1 0 8 chain 4520 chr1 248956422 + 41205472 41205519 MER9a2 513 + 381 428 88210 47 chain 62174 chr1 248956422 + 41207775 41208441 L1HS 6032 + 5368 6032 25823 658 2 0 6 chain 39022 chr1 248956422 + 41229300 41229747 L1PA6 6164 + 5715 6162 35341 447 chain 29054 chr1 248956422 + 41254823 41255138 AluYa5 310 + 0 310 43245 118 5 0 192 chain 2763 chr1 248956422 + 41454927 41454983 MIR 256 + 70 127 101885 24 16 17 16 chain 22816 chr1 248956422 + 41568820 41569224 MSTA 426 + 0 414 52633 100 9 14 20 20 22 9 0 3 20 3 0 5 14 19 24 29 27 151 chain 26431 chr1 248956422 + 41595588 41596007 MLT2A2 560 + 0 560 47084 47 0 25 96 59 58 76 2 111 15 0 8 124 chain 26381 chr1 248956422 + 41720568 41720950 L1MB1 2102 + 1620 2003 47147 119 8 6 10 1 0 101 2 4 15 1 0 67 2 0 42 0 5 14 chain 6086 chr1 248956422 + 41759142 41759222 MADE1 96 + 0 96 80778 45 3 19 32 chain 11577 chr1 248956422 + 41766231 41766400 MER20 218 + 31 204 67612 49 8 13 65 1 0 46 chain 25098 chr1 248956422 + 41798010 41798299 L1PA5 6144 + 5854 6144 49120 22 3 4 264 chain 22778 chr1 248956422 + 41855315 41855560 L1HS 6032 + 4982 5227 52705 245 chain 376205 chr1 248956422 + 41944569 41948875 HERV17-int 4347 + 12 4332 5548 15 1 0 52 1 0 36 2 0 24 1 0 170 1 2 4 1 0 340 1 0 118 0 1 694 1 2 162 0 1 149 0 2 127 1 0 343 0 1 256 0 14 1473 0 1 333 chain 26921 chr1 248956422 + 41949987 41950309 LTR17 781 + 0 324 46377 176 5 7 141 chain 2762 chr1 248956422 + 41958353 41958502 ERV3-16A3_I-int 1541 + 236 384 101897 15 99 100 13 2 0 20 chain 295214 chr1 248956422 + 41964956 41969276 L1PA10 4194 + 179 4150 6976 10 8 0 12 62 49 21 2 0 15 1 0 8 28 12 7 1 0 22 2 0 11 23 24 10 1 0 14 4 0 9 2 1 5 0 1 68 7 6 4 1 0 36 0 3 22 0 24 189 1 4 25 2 0 88 0 1 4 1 0 318 0 1 460 320 0 97 1 0 252 0 4 79 13 14 67 5 1 171 0 4 258 6 2 17 0 1 46 3 11 25 0 2 80 9 3 35 1 0 274 7 4 21 7 0 985 3 0 34 chain 346843 chr1 248956422 + 41990365 41994155 L1PA3long 6157 + 2357 6152 5953 875 0 4 1039 0 1 1876 chain 12544 chr1 248956422 + 42030181 42030357 MER30 238 + 37 230 65911 30 1 2 38 4 20 103 chain 369310 chr1 248956422 + 42059278 42063732 L1PA4 6152 + 10 4500 5671 19 0 13 4 13 0 75 10 24 12 6 18 939 0 5 58 9 0 474 0 3 442 0 1 12 1 0 20 0 3 574 3 4 70 0 4 387 2 0 74 0 1 1107 0 4 143 chain 29666 chr1 248956422 + 42077802 42078137 L1PA5 6144 + 5789 6124 42413 335 chain 17129 chr1 248956422 + 42105425 42105621 L1PA7 6471 + 6263 6459 59665 196 chain 199667 chr1 248956422 + 42252789 42254970 L1PA3long 6157 + 3971 6153 9729 890 0 1 445 1 0 516 0 1 329 chain 12198 chr1 248956422 + 42316767 42317012 L1PB1 5432 + 5196 5422 66477 22 1 0 13 2 5 45 1 0 15 2 0 6 19 9 15 3 1 5 1 0 14 2 0 24 1 0 22 1 0 8 5 4 18 chain 6670 chr1 248956422 + 42355932 42356009 MER34D 576 + 0 77 78734 77 chain 21546 chr1 248956422 + 42362616 42362973 MSTA 426 + 0 403 54442 94 34 62 79 30 28 33 1 21 86 chain 132203 chr1 248956422 + 42494064 42495516 L1PA3long 6157 + 4703 6157 13807 93 0 2 1359 chain 19832 chr1 248956422 + 42530999 42531359 MSTA 426 + 7 392 56629 44 12 0 49 33 52 50 1 2 32 30 27 33 1 21 75 chain 24465 chr1 248956422 + 42546117 42546399 AluSp 311 + 14 296 50086 282 chain 386791 chr1 248956422 + 42558660 42563565 L1PA8A 6298 + 1687 6290 5377 231 0 4 587 0 1 254 0 3 446 1 0 64 0 1 83 5 6 15 321 0 36 0 4 58 8 10 388 0 1 198 0 1 111 1 0 207 0 4 196 0 5 105 8 0 92 0 1 529 1 0 160 0 3 611 2 0 81 0 1 106 chain 8377 chr1 248956422 + 42569044 42569139 U6 107 + 12 107 73956 95 chain 84825 chr1 248956422 + 42569139 42570125 L1PA7 6471 + 5469 6459 20655 145 0 3 292 1 2 548 chain 23417 chr1 248956422 + 42626569 42626925 THE1A 353 + 0 353 51731 110 1 0 6 5 4 113 9 10 67 12 10 33 chain 127347 chr1 248956422 + 42626925 42628481 THE1A-int 1579 + 0 1574 14381 176 1 0 326 0 1 73 0 1 314 0 1 38 4 16 191 0 1 136 0 1 76 0 1 217 0 1 4 chain 27262 chr1 248956422 + 42628486 42628840 THE1A 353 + 0 353 45877 110 1 0 119 0 1 4 2 1 118 chain 93461 chr1 248956422 + 42750555 42751575 SVA_E 1901 + 869 1892 19118 54 1 0 4 3 0 31 14 21 913 chain 15710 chr1 248956422 + 42751626 42751826 THE1B 368 + 169 368 61393 125 2 1 73 chain 67885 chr1 248956422 + 42814633 42815378 L1PA5 6144 + 5399 6144 24478 745 chain 289499 chr1 248956422 + 42866265 42869799 HERVL-int 5654 + 2103 5654 7143 154 0 7 285 0 1 453 6 6 70 0 1 99 0 1 761 0 1 91 0 4 28 0 1 157 0 1 510 0 1 81 7 2 7 0 6 499 1 4 23 0 1 55 2 1 6 1 0 15 1 0 92 6 18 30 22 6 8 0 1 64 chain 33276 chr1 248956422 + 42869799 42870243 MLT2A2 560 + 0 560 39283 180 2 0 122 2 111 45 0 5 87 0 4 6 chain 10721 chr1 248956422 + 42908241 42908404 Tigger3a 397 + 158 335 69013 78 0 28 13 12 0 3 2 0 55 chain 22953 chr1 248956422 + 42956266 42956613 AluSp 311 + 1 295 52432 19 14 0 112 34 10 146 15 0 7 chain 7302 chr1 248956422 + 42963965 42964067 MER96B 391 + 224 323 76660 33 0 1 33 3 0 12 1 0 20 chain 23421 chr1 248956422 + 42988341 42988609 AluSp 311 + 1 297 51726 152 0 28 116 chain 6651 chr1 248956422 + 42991437 42991513 U6 107 + 0 76 78806 76 chain 22560 chr1 248956422 + 43014064 43014420 L1PB2 3958 + 3484 3837 53027 29 10 8 24 10 9 64 1 0 59 4 3 42 2 1 52 1 0 40 1 5 17 chain 11655 chr1 248956422 + 43048059 43048243 MER30 238 + 25 228 67469 68 13 5 13 1 25 16 0 6 41 3 0 29 chain 29547 chr1 248956422 + 43085533 43085921 LTR7 482 + 0 482 42550 113 0 51 60 0 1 5 0 31 46 7 17 41 1 2 115 chain 294279 chr1 248956422 + 43085923 43089545 HERVH-int 3825 + 0 3825 7002 499 0 4 21 23 22 24 1 0 10 1 0 8 5 1 14 7 1 14 1 0 13 3 0 14 12 11 41 1 0 82 0 1 4 2 0 6 10 18 184 1 0 280 0 1 156 9 0 29 0 2 10 1 0 309 0 1 306 8 13 373 0 2 43 1 0 527 35 37 39 0 210 495 chain 28931 chr1 248956422 + 43090773 43091157 LTR7 482 + 0 482 43434 113 0 51 60 0 1 39 0 31 12 7 17 41 1 2 56 0 4 55 chain 230871 chr1 248956422 + 43094294 43097059 L1PA7 6471 + 2161 6453 8724 104 2 1 373 0 2 60 0 1 309 1 0 409 5 0 40 10 1538 644 1 2 398 7 9 258 7 0 7 0 7 130 chain 20580 chr1 248956422 + 43109242 43109604 THE1B 368 + 0 368 55670 105 18 19 53 69 72 37 0 2 80 chain 80831 chr1 248956422 + 43138775 43139741 LTR13A 966 + 0 966 21466 117 10 11 256 1 0 582 chain 111599 chr1 248956422 + 43178037 43179285 L1PA5 6144 + 4882 6135 16865 409 0 4 701 0 1 138 chain 67274 chr1 248956422 + 43208040 43208795 L1PA5 6144 + 5374 6135 24629 364 0 6 391 chain 57687 chr1 248956422 + 43260744 43261915 LTR12 884 + 0 884 27058 148 0 107 32 4 5 63 0 22 144 0 2 169 103 0 17 1 0 84 315 0 91 chain 3632 chr1 248956422 + 43302991 43303035 MIRb 242 + 74 118 94165 44 chain 72586 chr1 248956422 + 43412585 43413982 L1MA3 4352 + 3167 4238 23407 14 0 1 68 0 3 38 0 1 95 44 26 167 0 2 25 23 24 53 294 0 34 6 5 280 0 3 36 21 21 28 36 15 7 3 0 125 chain 2962 chr1 248956422 + 43454667 43454724 MLT1M 334 + 48 106 100270 17 14 15 26 chain 13200 chr1 248956422 + 43460424 43460687 L1PB1 5432 + 5158 5424 64779 11 3 1 50 2 1 15 2 1 44 1 0 15 3 0 17 8 0 14 25 43 20 0 3 11 1 0 16 1 0 4 chain 153720 chr1 248956422 + 43501257 43502968 SVA_D 2077 + 0 2073 12126 8 1 0 5 1 0 3 1 0 12 0 11 428 1 40 372 0 310 157 0 1 41 0 1 272 0 3 409 chain 63975 chr1 248956422 + 43638228 43638931 L1PA5 6144 + 5433 6138 25416 242 0 2 461 chain 6473 chr1 248956422 + 43716468 43716551 U6 107 + 2 102 79430 52 0 17 31 chain 13809 chr1 248956422 + 43767675 43767834 L1PA7 6471 + 6311 6470 63872 159 chain 43110 chr1 248956422 + 43777311 43777830 L1PA11 4918 + 3704 4244 32707 198 0 1 18 0 20 303 chain 44637 chr1 248956422 + 43819932 43820535 L1P4 1494 + 759 1370 31772 139 14 18 218 0 5 213 1 0 18 chain 22329 chr1 248956422 + 43840497 43840781 MER11C 1089 + 779 1063 53367 86 0 1 54 1 0 143 chain 22524 chr1 248956422 + 44086188 44086452 AluSp 311 + 4 268 53083 264 chain 22346 chr1 248956422 + 44176414 44176707 AluSp 311 + 0 300 53346 53 5 13 187 5 4 43 chain 5549 chr1 248956422 + 44179982 44180068 LTR7 482 + 395 482 83036 24 14 15 48 chain 16969 chr1 248956422 + 44481406 44481648 L1PA8A 6298 + 6050 6292 59834 117 1 0 14 15 4 7 0 11 27 0 1 61 chain 4268 chr1 248956422 + 44492865 44492917 Tigger4b 360 + 0 52 89720 52 chain 3552 chr1 248956422 + 44599134 44599172 MER66B 489 + 295 333 94833 38 chain 90927 chr1 248956422 + 44738072 44739134 SVA_B 1603 + 51 1340 19519 372 0 116 74 0 37 201 2 83 42 1 0 33 6 0 331 chain 16468 chr1 248956422 + 44768289 44768516 AluSp 311 + 21 295 60416 51 10 19 41 2 0 35 0 40 88 chain 22791 chr1 248956422 + 44772723 44773077 L1MA1 4479 + 3860 4190 52684 39 8 0 48 1 0 5 3 0 48 1 0 78 1 0 29 2 0 35 1 0 4 18 18 8 7 0 18 chain 3929 chr1 248956422 + 44783744 44783791 MER5A 189 + 22 70 91919 15 0 1 32 chain 130150 chr1 248956422 + 44875750 44877210 SVA_D 2077 + 6 2077 14018 25 7 1 196 0 1 158 0 3 69 0 76 373 0 537 632 chain 3275 chr1 248956422 + 44907965 44908003 MLT1H 522 + 66 104 97225 38 chain 118414 chr1 248956422 + 44955086 44956497 L1PA7 6471 + 5026 6465 15817 98 0 5 418 0 1 21 2 1 51 0 4 186 1 0 120 2 0 390 1 0 42 5 6 53 0 22 21 chain 33711 chr1 248956422 + 45078902 45079352 LTR7 482 + 0 482 38915 101 15 14 109 5 37 51 0 1 169 chain 94312 chr1 248956422 + 45081284 45082341 SVA_D 2077 + 7 2077 18996 12 5 6 475 0 1011 374 0 1 191 chain 20987 chr1 248956422 + 45086542 45086787 L1PA6 6164 + 5914 6160 55139 110 0 1 135 chain 308565 chr1 248956422 + 45098521 45102047 L1PA6 6164 + 2623 6162 6649 566 0 1 504 0 1 257 0 1 538 3 2 600 0 6 216 0 3 225 0 1 287 0 1 330 chain 141568 chr1 248956422 + 45105013 45107227 SVA_A 1864 + 65 1863 12978 4 1 0 230 0 1 103 0 116 153 77 0 61 3 0 13 154 0 19 0 2 77 40 0 41 1 0 178 105 0 35 2 0 46 1 0 83 153 0 350 0 1 206 0 1 78 chain 5650 chr1 248956422 + 45105504 45105581 SVA_A 1864 + 746 822 28352 15 0 2 12 3 0 47 chain 11300 chr1 248956422 + 45105658 45105812 SVA_A 1864 + 895 1006 28352 46 7 6 39 44 2 18 chain 2935 chr1 248956422 + 45105908 45105948 SVA_A 1864 + 1102 1139 28352 7 3 0 30 chain 2135 chr1 248956422 + 45106168 45106202 SVA_A 1864 + 1247 1284 30954 11 1 4 22 chain 3004 chr1 248956422 + 45106202 45106251 SVA_A 1864 + 805 854 30334 49 chain 9319 chr1 248956422 + 45106440 45106592 SVA_A 1864 + 969 1114 30334 53 6 4 35 2 0 29 12 9 15 chain 7897 chr1 248956422 + 45135227 45135396 L1MB2 1706 + 1532 1694 75116 21 42 30 14 2 1 13 1 0 63 0 7 13 chain 27003 chr1 248956422 + 45152460 45152841 L1P4 1494 + 995 1375 46266 74 13 14 49 0 1 52 2 0 165 1 0 25 chain 139068 chr1 248956422 + 45153708 45156031 L1PB1 5432 + 3427 5427 13178 107 3 0 186 10 12 332 0 6 244 308 0 77 1 13 104 0 4 116 0 2 63 0 4 7 3 1 15 16 19 68 9 6 109 0 1 19 0 4 78 18 14 34 5 0 30 2 3 9 3 0 9 0 1 14 1 0 9 1 0 7 9 5 9 2 0 52 3 1 16 1 0 37 11 10 12 1 0 4 29 17 10 2 0 4 1 0 15 2 0 24 1 0 21 2 1 12 1 0 18 2 0 5 chain 536112 chr1 248956422 + 45162354 45168482 L1PA5 6144 + 0 6135 1558 121 0 14 1019 0 3 12 9 0 233 3 8 900 0 4 214 0 1 1480 1 0 197 2 0 446 1 0 642 1 0 174 1 2 517 9 0 6 0 2 140 chain 3898 chr1 248956422 + 45179616 45179684 L1MB8 1703 + 76 146 92140 6 3 0 25 5 10 29 chain 556032 chr1 248956422 + 45179944 45186411 L1PA3long 6157 + 0 6157 357 364 0 2 1215 0 3 598 317 0 359 0 1 1155 0 1 1609 1 0 174 1 2 674 chain 26310 chr1 248956422 + 45182134 45182410 AluYd8 298 + 0 276 47255 276 chain 12076 chr1 248956422 + 45222542 45222984 HSMAR1 1287 + 25 460 24405 83 30 20 13 0 2 93 2 3 30 0 6 26 6 0 159 chain 79195 chr1 248956422 + 45222984 45223853 SVA_E 1901 + 898 1887 21797 29 4 0 168 0 127 38 4 1 626 chain 13879 chr1 248956422 + 45224530 45225038 HSMAR1 1287 + 781 1287 24405 327 8 6 173 chain 2924 chr1 248956422 + 45232223 45232301 MADE1 96 + 0 96 100633 46 1 19 31 chain 5120 chr1 248956422 + 45237909 45237973 L1ME2z 1083 + 163 227 85060 64 chain 6802 chr1 248956422 + 45244257 45244346 L1MA4A 3247 + 3038 3126 78312 69 1 0 19 chain 93620 chr1 248956422 + 45247471 45248549 SVA_B 1603 + 7 1264 19092 13 8 0 17 1 25 134 1 0 590 0 164 314 chain 10813 chr1 248956422 + 45259175 45259364 MSTA-int 1630 + 1435 1619 68829 53 6 8 18 8 0 52 20 21 32 chain 27876 chr1 248956422 + 45268342 45268695 THE1A 353 + 0 353 45069 84 0 1 17 9 8 119 0 1 4 1 0 119 chain 127220 chr1 248956422 + 45268695 45270605 THE1A-int 1579 + 0 1579 14398 177 0 1 181 331 0 262 6 7 16 3 0 72 0 1 298 1 0 127 3 2 89 0 1 195 5 6 144 chain 13803 chr1 248956422 + 45270605 45270816 THE1A 353 + 0 212 63880 62 0 1 21 0 1 17 23 22 88 chain 9359 chr1 248956422 + 45270825 45270954 THE1A 353 + 220 353 71788 82 10 14 37 chain 546325 chr1 248956422 + 45284565 45290709 L1PA4 6152 + 3 6152 952 472 7 11 52 5 1 820 11 10 2982 0 4 309 0 1 1238 0 1 248 chain 131489 chr1 248956422 + 45310335 45313065 MER4-int 2692 + 547 2372 13872 141 3 5 21 14 18 393 0 3 193 0 1 72 7 23 17 1 0 31 2 3 5 0 2 49 0 1 115 303 0 112 1 3 136 1 0 117 322 0 11 0 1 116 9 10 41 312 0 40 1 0 34 1 2 109 chain 15473 chr1 248956422 + 45319545 45319738 HERVH-int 3825 + 3405 3825 61696 12 0 227 181 chain 25253 chr1 248956422 + 45322315 45322586 MER9a1 513 + 242 513 48867 271 chain 21803 chr1 248956422 + 45323834 45324572 LTR19A 502 + 0 501 54096 34 27 26 119 0 74 20 19 0 4 19 0 57 335 41 55 19 41 30 chain 29505 chr1 248956422 + 45336353 45336779 LTR7B 505 + 0 495 42600 108 0 10 57 17 77 27 0 3 80 1 0 45 2 0 34 14 13 41 chain 6851 chr1 248956422 + 45370911 45371019 L1MB2 1706 + 349 503 78137 6 0 4 66 9 51 27 chain 9749 chr1 248956422 + 45388641 45389091 MSTC 436 + 4 153 70933 64 314 0 46 0 13 26 chain 16462 chr1 248956422 + 45415837 45416061 MER30 238 + 0 237 60432 110 11 24 103 chain 20684 chr1 248956422 + 45422087 45422369 L1PA8A 6298 + 5972 6291 55523 119 11 30 89 5 6 31 0 17 27 chain 142223 chr1 248956422 + 45424700 45428010 L1MA3 4352 + 1866 4311 12916 218 0 7 220 4 2 23 0 1 4 6 5 23 17 21 72 0 1 9 875 322 22 0 1 123 2 0 197 2 1 13 0 4 9 0 2 100 0 7 114 3 0 5 14 13 173 351 40 116 0 1 290 0 2 23 1 3 14 3 0 26 51 26 19 0 10 31 1 0 20 0 4 32 4 0 23 2 0 24 1 0 6 1 0 23 chain 4551 chr1 248956422 + 45431558 45431662 Tigger4a 237 + 125 236 88058 44 8 7 11 20 28 21 chain 3809 chr1 248956422 + 45481458 45481502 Tigger2b_Pri 1066 + 0 44 92778 44 chain 77535 chr1 248956422 + 45497519 45498400 SVA_D 2077 + 327 2075 22191 152 0 825 10 0 1 27 1 0 19 0 49 659 7 0 6 chain 77985 chr1 248956422 + 45513510 45514465 LTR5_Hs 974 + 0 974 22103 13 0 4 196 1 0 28 2 0 44 0 1 114 3 0 18 0 10 394 5 12 37 2 0 30 0 5 68 chain 77966 chr1 248956422 + 45528102 45529068 LTR5_Hs 974 + 3 974 22105 166 1 0 116 0 1 181 0 1 188 1 0 163 8 15 31 8 6 103 chain 87098 chr1 248956422 + 45576397 45577481 MER11B 1079 + 0 1079 20218 225 0 5 32 3 0 95 2 1 202 37 35 142 0 1 31 6 0 276 9 10 24 chain 175873 chr1 248956422 + 45724009 45726090 SVA_E 1901 + 0 1887 10784 145 1 0 599 40 0 73 1 0 19 1 0 87 53 0 37 97 0 135 1 0 792 chain 3320 chr1 248956422 + 45724976 45725015 SVA_E 1901 + 1095 1134 71776 39 chain 7676 chr1 248956422 + 45725065 45725156 SVA_E 1901 + 1009 1255 67022 16 0 77 53 0 78 22 chain 14159 chr1 248956422 + 45799093 45799244 L1PA3long 6157 + 6004 6155 63369 151 chain 47944 chr1 248956422 + 45816977 45817778 L1M1 2793 + 1201 2010 30317 47 4 0 23 16 6 32 1 0 4 0 1 16 0 1 24 0 4 64 30 33 62 1 7 5 2 0 88 2 0 52 0 1 65 22 24 24 5 6 120 41 49 51 chain 29358 chr1 248956422 + 45948015 45948424 L1PREC2 3366 + 2334 2741 42798 58 13 10 314 8 8 6 0 1 10 chain 6039 chr1 248956422 + 45957058 45957144 Merlin1_HS 166 + 77 161 80932 30 1 0 21 3 2 31 chain 300246 chr1 248956422 + 46014596 46017900 L1PA3long 6157 + 2414 5729 6821 687 0 1 943 5 0 317 0 4 123 0 5 87 2 0 707 0 4 12 0 4 421 chain 122720 chr1 248956422 + 46057367 46058923 THE1A-int 1579 + 0 1574 15077 149 0 5 280 6 8 188 17 19 204 0 7 23 1 4 673 1 0 14 chain 23551 chr1 248956422 + 46086984 46087276 L1PA5 6144 + 5852 6144 51500 34 1 0 99 1 2 157 chain 134420 chr1 248956422 + 46240504 46242948 SVA_F 1814 + 335 1814 13607 553 982 0 59 0 15 39 6 4 165 1 0 17 1 0 611 0 6 10 chain 33825 chr1 248956422 + 46241058 46241720 SVA_F 1814 + 888 1291 38830 9 0 1 24 274 0 26 3 18 308 1 0 17 chain 8599 chr1 248956422 + 46241115 46241340 SVA_F 1814 + 962 1138 45793 13 32 0 5 17 0 158 chain 2205 chr1 248956422 + 46241133 46241160 SVA_F 1814 + 1107 1134 59265 27 chain 1511 chr1 248956422 + 46241342 46241365 SVA_F 1814 + 1139 1162 66696 23 chain 9797 chr1 248956422 + 46241720 46242027 SVA_F 1814 + 989 1291 42662 22 1 0 159 2 0 17 1 0 87 1 0 17 chain 27919 chr1 248956422 + 46310789 46311089 AluYb8 318 + 4 303 45001 205 1 0 94 chain 78905 chr1 248956422 + 46320295 46321263 LTR5_Hs 974 + 0 974 21900 279 2 7 490 14 10 33 8 15 37 2 0 103 chain 61057 chr1 248956422 + 46329762 46330515 LTR5_Hs 974 + 219 974 26091 69 0 1 487 12 8 34 0 6 6 0 1 40 2 0 103 chain 7881 chr1 248956422 + 46334274 46334371 MER66C 541 + 438 536 75180 93 0 1 4 chain 6406 chr1 248956422 + 46339468 46339546 Charlie1a 1436 + 540 617 79654 7 1 0 70 chain 6610 chr1 248956422 + 46401355 46401428 LTR12C 1709 + 1636 1709 78949 73 chain 3818 chr1 248956422 + 46473198 46473281 MIR 256 + 109 192 92722 15 27 27 41 chain 75081 chr1 248956422 + 46504943 46505760 L1PA3long 6157 + 5340 6157 22826 817 chain 10500 chr1 248956422 + 46602560 46602761 MER30 238 + 2 238 69421 21 20 38 31 1 3 12 4 0 7 2 24 49 6 3 48 chain 22431 chr1 248956422 + 46650417 46650732 L1MA5 2750 + 2331 2646 53230 5 0 1 39 0 1 6 1 0 179 1 0 53 19 19 12 chain 29437 chr1 248956422 + 46651691 46652010 L1PA3long 6157 + 5156 5475 42688 319 chain 122832 chr1 248956422 + 46693863 46695231 L1PA5 6144 + 4767 6144 15051 110 0 1 594 0 1 526 0 7 138 chain 529569 chr1 248956422 + 46728043 46734655 L1PA7 6471 + 0 6465 1847 258 14 20 124 7 0 7 3 0 94 8 12 99 0 1 277 0 1 317 0 4 345 3 4 430 0 3 38 0 1 125 0 4 24 1 0 130 5 4 215 0 26 69 23 0 31 0 2 38 8 0 393 0 4 290 174 0 139 1 0 20 16 20 169 12 0 270 0 2 447 0 1 102 4 5 104 0 8 557 0 1 677 3 10 318 0 2 223 chain 12513 chr1 248956422 + 46731434 46731576 L1PA6 6164 + 6020 6162 65967 142 chain 34922 chr1 248956422 + 46754655 46755142 LTR10D 510 + 0 509 38074 59 0 1 14 1 2 5 0 5 9 0 1 115 4 16 4 1 0 31 0 1 45 5 0 6 2 7 51 5 6 31 0 1 99 chain 56111 chr1 248956422 + 46755330 46755992 PABL_B 668 + 0 668 27532 73 0 5 200 1 0 6 0 1 80 0 1 302 chain 75154 chr1 248956422 + 46756511 46757382 MER11D 897 + 0 897 22805 576 1 24 233 5 6 17 0 2 39 chain 37859 chr1 248956422 + 46771191 46771670 MER4A1 472 + 0 472 36169 230 18 11 231 chain 99468 chr1 248956422 + 46773106 46774760 MER4-int 2692 + 329 1766 18356 224 0 9 17 0 7 38 5 54 40 10 0 60 0 13 74 1 2 258 0 1 28 21 41 22 316 0 40 0 12 141 8 0 8 0 8 33 1 0 130 2 0 177 chain 67918 chr1 248956422 + 46796774 46797531 L1PA5 6144 + 2195 2951 24466 389 1 0 367 chain 48973 chr1 248956422 + 46808600 46809135 L1PA2 6032 + 5500 6032 29963 527 3 0 5 chain 84289 chr1 248956422 + 46821127 46822056 L1PA4 6152 + 5038 5970 20753 260 0 4 607 1 0 61 chain 518554 chr1 248956422 + 46846137 46852618 L1PA5 6144 + 0 6128 2338 33 0 1 76 1 0 695 16 2 11 18 1 350 9 0 646 2 1 34 34 4 142 0 15 1414 0 6 647 2 0 624 371 57 89 0 10 1056 3 4 114 1 0 27 0 3 66 chain 22727 chr1 248956422 + 46868817 46869133 L1PA11 4918 + 3367 3686 52792 53 7 8 106 1 0 5 1 2 126 0 2 17 chain 250816 chr1 248956422 + 46879380 46882220 L1PA5 6144 + 3296 6144 8209 1058 0 1 123 0 2 389 0 1 1218 0 4 52 chain 72026 chr1 248956422 + 46900688 46901761 MER11A 1151 + 0 1151 23530 79 7 15 102 1 0 31 0 4 58 8 5 22 0 4 221 4 3 124 0 1 4 15 18 11 3 4 25 12 16 32 31 57 6 0 2 17 0 32 97 9 8 87 1 0 66 chain 93291 chr1 248956422 + 46902945 46906008 HERVK11-int 2540 + 686 2227 19145 51 5 0 13 4 7 6 1 0 9 2 0 20 19 11 15 5 0 7 33 10 43 3 0 12 2 1 48 1530 116 9 3 1 30 0 1 25 9 8 48 24 20 18 16 6 5 1 0 27 13 2 35 21 1 428 17 12 55 3 0 49 1 0 59 1 0 131 15 14 63 11 7 118 chain 2010 chr1 248956422 + 46943318 46943339 L1PA7 6471 + 4438 4459 106229 21 chain 119169 chr1 248956422 + 46943340 46944776 L1PA7 6471 + 4469 5910 15662 508 1 2 6 1 0 295 0 1 333 0 3 76 9 10 207 chain 33235 chr1 248956422 + 46944777 46945161 L1PA7 6471 + 5910 6297 39313 4 0 1 125 0 2 255 chain 13409 chr1 248956422 + 46945177 46945329 L1PA7 6471 + 6314 6466 64454 152 chain 8258 chr1 248956422 + 46947960 46948076 HERV17-int 4347 + 20 132 74268 7 1 0 50 2 1 34 2 0 20 chain 305817 chr1 248956422 + 46954133 46958267 HERV17-int 4347 + 13 4347 6698 13 6 5 46 2 1 35 2 0 13 14 13 26 348 564 9 0 33 620 51 5 19 4 3 45 8 9 58 5 6 1230 0 1 1580 chain 27778 chr1 248956422 + 46958582 46958907 LTR17 781 + 0 326 45212 238 1 2 86 chain 4846 chr1 248956422 + 46962527 46962586 L1P2 5180 + 1216 1275 86451 59 chain 7775 chr1 248956422 + 46968997 46969386 MSTB 430 + 14 415 75426 33 23 26 38 169 174 6 1 0 13 55 60 51 chain 517283 chr1 248956422 + 46975977 46982137 L1PA6 6164 + 0 6161 2413 509 2 1 1225 1 2 676 2 1 132 0 3 640 0 1 429 2 1 442 0 1 521 2 0 275 0 1 60 3 0 340 0 1 742 13 14 144 chain 460014 chr1 248956422 + 46985352 46991052 L1PA7 6471 + 787 6470 4125 104 1 5 6 4 0 207 2 0 153 0 3 6 4 1 361 5 7 79 14 0 455 6 11 135 1 2 126 0 1 39 0 1 103 4 0 44 2 0 631 0 2 7 4 2 200 1 0 16 1 0 8 3 4 321 1 2 59 1 2 323 17 0 23 1 0 80 0 3 22 0 1 400 1 0 424 1 0 54 0 3 398 1 0 686 6 0 8 0 7 130 0 7 11 chain 11381 chr1 248956422 + 46999863 47000000 THE1D-int 1627 + 1477 1614 67950 137 chain 26696 chr1 248956422 + 47004000 47004346 MER51B 395 + 41 395 46691 100 0 5 99 1 0 88 1 5 57 chain 523908 chr1 248956422 + 47006455 47012568 L1PA5 6144 + 3 6144 2095 392 0 2 38 14 15 98 0 1 492 1 0 4 8 9 210 9 8 136 1 6 890 1 4 212 0 3 221 0 8 1178 1 2 412 0 4 1463 0 1 332 chain 32206 chr1 248956422 + 47017544 47017997 MER4A1 472 + 0 472 40182 15 4 7 203 7 28 36 11 10 11 4 0 162 chain 256274 chr1 248956422 + 47062952 47066736 L1PBa 3878 + 230 3748 8079 6 0 4 284 1 0 53 2 0 268 1 0 4 1 2 128 8 9 21 0 1 72 0 1 271 308 0 93 0 2 69 0 3 72 23 21 14 1 0 190 0 4 72 0 1 141 12 26 130 0 1 158 2 1 261 12 15 84 0 2 18 2 1 117 1 0 184 10 9 177 3 0 117 0 13 73 1 2 73 16 24 21 9 8 164 2 1 22 2 0 10 chain 163942 chr1 248956422 + 47113624 47115446 L1PA4 6152 + 4318 6141 11485 546 0 1 1276 chain 177141 chr1 248956422 + 47125474 47127494 L1PA4 6152 + 4119 6141 10720 1181 0 1 25 0 1 814 chain 18079 chr1 248956422 + 47132262 47132531 L1PA16 3655 + 2596 2870 58579 64 29 28 33 0 1 30 0 5 113 chain 89549 chr1 248956422 + 47133174 47134203 LTR5A 1029 + 0 1029 19751 147 1 0 388 0 1 493 chain 413387 chr1 248956422 + 47153662 47160274 L1PA8 5853 + 50 5853 4982 22 2 0 10 1 0 10 52 16 103 1 31 59 39 27 16 0 4 102 19 11 364 4 21 96 0 1 4 1 0 54 0 1 53 26 31 69 0 4 44 50 52 4 1 0 136 0 1 297 4 5 7 0 1 7 5 3 307 7 0 6 0 1 49 8 1 789 3 2 42 0 1 15 0 4 13 6 268 175 7 6 10 10 9 357 1052 0 293 11 13 138 15 1 153 1 3 4 1 0 611 0 4 16 0 2 76 2 1 7 0 1 468 1 0 46 2 0 69 17 15 48 2 1 16 5 4 92 chain 85304 chr1 248956422 + 47157143 47158095 L1PA3long 6157 + 5186 6142 20569 916 0 4 36 chain 455032 chr1 248956422 + 47165926 47171102 L1PA4 6152 + 3 5187 4257 250 1 0 419 5 11 340 0 1 212 0 1 38 0 1 878 0 1 452 0 1 557 1 0 524 1 0 196 0 1 1205 1 0 96 chain 78549 chr1 248956422 + 47307314 47308360 MER11C 1089 + 0 1063 21962 247 7 16 50 0 4 42 0 1 26 1 0 177 16 15 112 1 0 4 1 5 38 0 1 127 0 1 54 1 0 117 0 1 25 chain 2844 chr1 248956422 + 47316748 47316790 MER2 342 + 149 188 101276 5 3 0 34 chain 18862 chr1 248956422 + 47386343 47386624 L1PA16 3655 + 3293 3578 57697 120 18 17 61 11 16 71 chain 3198 chr1 248956422 + 47391906 47391944 MLT1E2 623 + 582 621 97913 19 0 1 19 chain 4029 chr1 248956422 + 47418586 47418654 MER5A1 166 + 0 75 91253 6 0 1 17 11 17 34 chain 22852 chr1 248956422 + 47422945 47423229 AluSp 311 + 8 297 52575 34 0 4 82 1 2 167 chain 5559 chr1 248956422 + 47472918 47472990 MIR 256 + 103 183 82993 40 0 8 32 chain 125638 chr1 248956422 + 47541901 47543442 THE1B-int 1605 + 18 1605 14607 414 7 32 114 0 11 88 0 9 121 0 1 797 chain 21176 chr1 248956422 + 47543442 47543804 THE1B 368 + 0 368 54915 104 18 19 54 61 66 125 chain 232712 chr1 248956422 + 47602235 47604983 L1PA5 6144 + 0 6074 8672 971 0 3325 49 3 5 503 0 1 261 1 3 5 1 0 762 3 0 189 chain 18731 chr1 248956422 + 47667280 47667669 MLT1A1 405 + 5 405 57867 31 0 1 11 17 20 44 122 129 164 chain 92532 chr1 248956422 + 47740001 47741307 L1PA14 3548 + 2173 3456 19269 313 0 2 47 2 1 153 1 0 151 0 2 78 0 2 16 3 1 14 2 0 48 12 8 105 8 4 13 2 0 6 8 7 77 1 0 111 1 0 10 5 1 36 4 2 6 1 0 11 1 0 17 1 0 22 1 0 19 chain 22847 chr1 248956422 + 47773402 47773768 THE1B 368 + 0 368 52590 111 0 3 7 17 15 33 25 23 18 0 4 16 1 0 76 1 0 4 1 2 56 chain 14709 chr1 248956422 + 47879343 47879532 Tigger3a 397 + 142 326 62667 152 5 0 32 chain 16822 chr1 248956422 + 47923546 47923781 MLT2D 439 + 2 237 60007 84 7 6 51 4 5 89 chain 459690 chr1 248956422 + 47956240 47961613 L1PA5 6144 + 0 5384 4136 135 6 20 688 0 3 8 3 0 304 20 11 239 1 6 899 2 1 195 1 0 716 1 5 55 1 0 10 0 1 48 3 0 259 0 2 68 3 0 198 1 0 470 0 4 1039 chain 28261 chr1 248956422 + 48021117 48021443 L1PA5 6144 + 5816 6143 44467 315 1 2 10 chain 29664 chr1 248956422 + 48096050 48096374 L1PA3long 6157 + 4367 4691 42419 324 chain 11352 chr1 248956422 + 48124725 48124902 L1P4 1494 + 1235 1410 68004 4 0 1 110 1 0 30 12 10 20 chain 559532 chr1 248956422 + 48150125 48156157 L1PA2 6032 + 0 6032 187 6032 chain 64816 chr1 248956422 + 48174355 48175123 SVA_B 1603 + 840 1603 25234 12 1 0 12 1 0 112 1 0 621 2 0 6 chain 129714 chr1 248956422 + 48191769 48193306 SVA_F 1814 + 0 1472 14073 931 1 64 16 1 0 178 127 0 283 chain 11373 chr1 248956422 + 48192896 48193023 SVA_F 1814 + 1013 1140 55513 127 chain 547180 chr1 248956422 + 48277194 48283343 L1PA3long 6157 + 4 6157 911 1042 1 0 54 8 9 529 0 1 1569 0 1 6 7 6 1426 0 1 607 1 0 71 0 1 153 0 2 675 chain 225058 chr1 248956422 + 48288370 48291156 L1P2 5180 + 3 2802 8886 109 21 7 31 2 1 97 2 1 259 1 0 7 1 0 167 0 1 104 1 0 6 1 0 134 0 25 204 0 3 243 1 0 339 0 2 368 0 3 688 chain 23378 chr1 248956422 + 48299242 48299540 AluSp 311 + 11 306 51801 109 1 0 162 2 0 24 chain 522671 chr1 248956422 + 48311588 48317688 L1PA4 6152 + 6 6152 2153 442 0 3 214 12 11 77 0 19 643 1 6 19 3 1 853 0 4 988 1 0 116 0 1 279 0 1 95 0 1 159 0 1 405 0 4 64 16 17 58 0 3 476 0 1 331 0 4 200 0 1 219 0 1 429 chain 108098 chr1 248956422 + 48322237 48323577 L1PA7 6471 + 5128 6469 17309 493 2 0 389 0 2 124 1 2 215 9 6 5 0 3 102 chain 26472 chr1 248956422 + 48435201 48435693 LTR12 884 + 0 387 47022 23 2 1 52 25 0 17 0 2 68 0 2 37 0 3 5 1 0 131 50 9 12 42 0 16 2 0 9 chain 4007 chr1 248956422 + 48435562 48435612 LTR12 884 + 209 259 54305 50 chain 3366 chr1 248956422 + 48435624 48435666 LTR12 884 + 271 313 54305 42 chain 45430 chr1 248956422 + 48444099 48444846 LTR12 884 + 5 873 31346 19 1 0 29 0 41 135 153 0 110 0 1 38 2 0 186 1 0 24 0 236 49 chain 8340 chr1 248956422 + 48444289 48444398 LTR12 884 + 237 346 68629 109 chain 1603 chr1 248956422 + 48444398 48444436 LTR12 884 + 123 163 60446 36 0 2 2 chain 67751 chr1 248956422 + 48461605 48462354 L1PA3long 6157 + 5408 6157 24505 749 chain 119702 chr1 248956422 + 48474802 48476355 THE1A-int 1579 + 0 1573 15578 24 2 3 80 0 3 59 9 9 472 0 1 4 15 17 168 0 1 147 1 0 251 1 0 214 0 14 106 chain 7531 chr1 248956422 + 48476361 48476589 THE1A 353 + 0 228 50736 47 0 1 48 1 0 13 0 2 8 17 15 94 chain 28233 chr1 248956422 + 48476595 48476929 L1PA7 6471 + 6138 6467 44513 267 3 0 53 2 0 9 chain 4988 chr1 248956422 + 48476938 48477089 THE1A 353 + 228 353 50736 11 0 1 15 27 0 98 chain 138153 chr1 248956422 + 48478691 48480244 SVA_D 2077 + 1 2071 13254 6 1 0 7 4 0 5 1 0 23 7 0 518 0 40 320 1 490 132 1 0 261 0 2 266 chain 48686 chr1 248956422 + 48812597 48813121 L1PA4 6152 + 5628 6152 30055 524 chain 3392 chr1 248956422 + 48822694 48822739 MLT2B4 540 + 338 432 96158 23 0 49 22 chain 20310 chr1 248956422 + 48837301 48837647 MLT2A2 560 + 0 480 56006 68 0 14 86 12 10 15 26 34 67 10 119 43 1 6 18 chain 16465 chr1 248956422 + 48925417 48925632 MER30 238 + 11 238 60425 97 3 0 9 3 21 54 3 0 46 chain 546352 chr1 248956422 + 49006018 49012036 L1PA3long 6157 + 4 6152 950 148 0 1 618 7 135 1273 0 1 3972 chain 110587 chr1 248956422 + 49058594 49060087 THE1C-int 1605 + 15 1596 16996 29 1 2 5 0 12 47 0 54 163 0 6 26 0 1 69 16 23 48 7 6 88 0 1 78 1 0 17 0 8 8 6 0 35 1 2 9 6 0 385 0 4 58 13 11 82 17 13 33 0 13 245 chain 95169 chr1 248956422 + 49094648 49095725 L1PA4 6152 + 3950 5026 18886 201 0 3 637 4 0 235 chain 6659 chr1 248956422 + 49127306 49127425 L1PB1 5432 + 5311 5422 78779 16 2 0 5 2 1 15 2 0 22 1 0 21 1 0 13 1 0 18 chain 60207 chr1 248956422 + 49132663 49133400 L1PA8 5853 + 5118 5853 26318 402 0 1 41 1 0 46 2 0 70 2 1 15 1 0 46 0 3 17 2 1 92 chain 17156 chr1 248956422 + 49145695 49145968 L1MA2 4263 + 3848 4111 59623 108 11 9 89 20 13 38 1 0 6 chain 26826 chr1 248956422 + 49158075 49158377 L1PA7 6471 + 5203 5508 46506 29 0 3 273 chain 96527 chr1 248956422 + 49253394 49254837 L1PA13 3608 + 2090 3522 18714 209 0 3 108 0 5 186 11 12 149 6 5 144 56 58 100 5 6 53 1 0 33 1 0 113 2 0 62 1 0 26 3 2 32 2 0 47 9 5 18 1 0 22 24 16 14 1 0 4 chain 499148 chr1 248956422 + 49257816 49263310 L1PA3long 6157 + 645 6152 3159 256 0 7 4201 3 8 363 0 1 671 chain 534221 chr1 248956422 + 49282507 49288376 L1PA2 6032 + 0 6031 1652 932 0 2 724 3 0 917 0 3 554 1 0 26 0 1 143 0 159 261 0 1 2308 chain 41137 chr1 248956422 + 49312871 49315642 L1PA7 6471 + 5104 5711 33891 59 2167 0 458 0 3 87 chain 9635 chr1 248956422 + 49314989 49315097 L1PA7 6471 + 5041 5149 71191 108 chain 6512 chr1 248956422 + 49370866 49370949 MLT2D 439 + 93 181 79302 38 0 5 45 chain 35697 chr1 248956422 + 49379910 49380304 L1PA3long 6157 + 4054 4448 37604 394 chain 152742 chr1 248956422 + 49380308 49382006 L1PA3long 6157 + 4459 6157 12185 1698 chain 3862 chr1 248956422 + 49395685 49395727 MER1A 529 + 471 513 92393 42 chain 41711 chr1 248956422 + 49408401 49408951 MLT2A2 560 + 0 560 33544 168 13 12 223 1 12 145 chain 45397 chr1 248956422 + 49431845 49432476 PABL_A 660 + 0 657 31368 80 18 16 120 0 45 290 32 19 23 8 5 55 1 0 4 chain 30790 chr1 248956422 + 49439504 49439944 MLT2A1 477 + 0 477 41312 168 5 2 157 0 12 38 19 51 7 4 0 42 chain 145484 chr1 248956422 + 49439944 49442059 HERVL-int 5654 + 0 4301 12657 103 3 2 18 308 0 296 0 2 411 0 1 4 8 0 652 0 2500 312 chain 56669 chr1 248956422 + 49484997 49485618 L1PA4 6152 + 5531 6152 27369 621 chain 13184 chr1 248956422 + 49503988 49504365 THE1D 372 + 0 370 64806 12 0 2 18 1 0 6 7 3 10 51 43 42 92 98 101 14 12 23 chain 51562 chr1 248956422 + 49511047 49511614 L1PA2 6032 + 5461 6028 29010 567 chain 72937 chr1 248956422 + 49514316 49515124 L1PA4 6152 + 4419 5227 23325 808 chain 13719 chr1 248956422 + 49541800 49542112 LTR12C 1709 + 784 1033 63992 53 1 0 11 119 0 61 3 18 4 0 1 37 0 41 23 chain 6674 chr1 248956422 + 49555498 49555595 LTR12D 1347 + 456 662 78722 67 1 110 29 chain 77439 chr1 248956422 + 49555621 49556515 L1PA5 6144 + 5222 6141 22209 76 0 4 628 4 6 103 0 19 83 chain 453681 chr1 248956422 + 49573231 49578830 HERVL-int 5654 + 0 5654 4293 113 0 1 63 0 1 272 1 3 109 0 1 274 0 1 32 10 15 57 12 17 164 1 0 476 0 4 17 0 5 284 2 1 146 0 5 62 0 1 132 1 0 21 1 2 317 0 1 273 10 11 423 2 1 192 0 1 28 0 10 1256 0 1 432 1 0 53 0 13 326 6 7 30 chain 19452 chr1 248956422 + 49591494 49591955 L1PREC2 3366 + 2627 3048 57085 18 1 2 103 2 0 38 19 18 43 8 4 12 34 26 9 2 0 5 4 1 19 6 4 22 4 1 11 22 8 24 17 15 38 chain 110585 chr1 248956422 + 49601454 49602820 L1PA7 6471 + 5061 6455 16997 62 5 0 8 3 8 326 0 1 148 0 3 22 0 1 69 2 6 295 0 2 295 4 2 47 15 34 65 chain 184848 chr1 248956422 + 49618378 49620602 L1PA7 6471 + 3718 5944 10346 111 0 1 179 7 4 193 1 2 23 0 1 787 2 1 579 0 4 18 1 0 18 0 1 70 1 0 234 chain 33532 chr1 248956422 + 49636828 49637265 MLT2A1 477 + 7 477 39058 161 5 2 215 6 0 8 4 46 38 chain 284254 chr1 248956422 + 49655470 49659019 L1PA5 6144 + 2897 6144 7311 265 3 4 78 0 3 38 306 0 1715 5 6 990 1 0 148 chain 61357 chr1 248956422 + 49659048 49659891 L1PA10 4194 + 1316 2207 26022 15 0 1 315 0 2 49 0 12 69 6 7 110 4 19 52 15 30 130 4 6 74 chain 31489 chr1 248956422 + 49691599 49691994 MLT2A1 477 + 0 392 40743 109 1 0 59 5 2 9 0 1 24 0 1 180 1 0 7 chain 12430 chr1 248956422 + 49709477 49709660 L1PA7 6471 + 5368 5517 66098 55 34 0 94 chain 24273 chr1 248956422 + 49709663 49709976 L1PA7 6471 + 5531 5845 50386 90 1 0 112 8 9 14 0 1 88 chain 51662 chr1 248956422 + 49709976 49710599 L1PA7 6471 + 5846 6470 28975 290 0 1 160 1 2 167 1 0 4 chain 64104 chr1 248956422 + 49716526 49717323 L1PA7 6471 + 4057 4927 25393 182 11 11 237 0 1 225 0 72 142 chain 35967 chr1 248956422 + 49720958 49721451 LTR12F 595 + 0 595 37432 55 8 10 38 11 112 27 1 0 353 chain 466546 chr1 248956422 + 49737846 49743428 L1PA4 6152 + 13 5516 3945 85 87 0 209 49 50 608 6 7 6 1 0 728 0 3 415 0 3 903 8 9 125 2 1 398 0 1 1432 0 1 205 1 0 314 chain 59198 chr1 248956422 + 49760391 49761130 L1PA8A 6298 + 5551 6291 26606 89 3 2 366 0 1 181 4 5 96 chain 75497 chr1 248956422 + 49801978 49802860 MER11D 897 + 0 897 22718 273 12 8 293 0 23 236 5 1 63 chain 55032 chr1 248956422 + 49867592 49868335 L1PA10 4194 + 1301 4141 27866 68 0 1 78 0 1 4 1 0 194 0 2 36 0 2100 263 1 0 28 1 0 36 8 4 25 chain 532097 chr1 248956422 + 49915108 49921238 L1PA5 6144 + 3 6132 1746 551 1 0 146 5 6 1156 1 2 23 2 0 352 6 8 917 6 5 501 0 3 269 1 0 338 3 0 1011 1 0 437 8 9 395 chain 54441 chr1 248956422 + 49922269 49923098 L1PA13 3608 + 2685 3488 28072 214 1 2 120 17 8 103 1 0 28 1 0 115 2 0 54 11 10 11 3 0 12 4 3 26 9 5 48 8 4 19 1 0 21 chain 538403 chr1 248956422 + 49934850 49940861 L1PA3long 6157 + 6 6157 1432 736 1 0 1160 2 0 1104 6 1 647 0 1 318 0 144 890 0 2 548 1 2 598 chain 380770 chr1 248956422 + 49944261 49950544 L1PB1 5432 + 12 5420 5466 7 1 0 151 31 22 111 0 1 57 3 4 20 1 2 17 3 2 96 44 43 7 3 0 304 0 1 50 3 2 316 5 6 166 2 0 5 6 18 151 2 9 14 12 8 94 1 4 205 0 3 17 14 11 153 1 2 6 1 0 46 1 2 227 19 23 105 3 0 326 10 21 146 1 0 4 0 1 197 0 2 124 2 1 136 0 1 264 656 12 317 11 3 118 0 6 112 25 0 175 0 1 13 13 18 30 5 11 87 3 0 125 11 12 52 0 3 254 297 90 5 2 0 53 7 6 11 2 1 29 4 0 10 45 31 19 13 10 9 2 0 24 1 0 21 1 0 13 1 0 16 chain 12733 chr1 248956422 + 49959607 49959888 L1PA15 4387 + 4087 4353 65559 13 14 13 14 20 21 36 2 1 21 4 0 11 1 0 50 7 4 43 3 1 11 7 3 24 chain 33294 chr1 248956422 + 49967258 49967649 L1PA7 6471 + 6055 6466 39268 366 0 20 25 chain 3183 chr1 248956422 + 49982836 49982869 MER52A 1651 + 795 828 98062 33 chain 2678 chr1 248956422 + 49994119 49994159 L1MC5 759 + 451 490 102457 17 2 0 5 0 1 16 chain 250378 chr1 248956422 + 49995686 49999214 L1PBa 3878 + 165 3800 8222 48 24 21 108 19 0 182 12 11 47 1 0 46 2 1 38 3 1 27 1 5 236 8 11 39 0 1 231 0 58 10 59 1 48 0 3 40 5 4 4 1 0 55 17 25 142 16 16 392 0 2 365 1 0 75 1 112 72 0 1 70 1 7 50 1 5 447 1 2 303 0 1 19 1 2 166 2 1 24 0 6 10 15 5 10 1 0 6 5 3 13 1 0 7 chain 46008 chr1 248956422 + 50010326 50011228 L1MA1 4479 + 3403 4190 31058 65 0 1 50 2 0 12 45 26 17 1 0 7 5 1 15 0 1 13 0 1 103 1 0 24 2 0 16 1 0 71 1 0 19 17 14 88 30 26 10 0 1 89 6 5 29 80 10 25 1 0 9 1 0 11 18 10 18 chain 42402 chr1 248956422 + 50015673 50016279 L1PA15 4387 + 3094 3821 33127 12 0 113 11 21 11 242 0 19 67 12 13 231 2 0 8 chain 15394 chr1 248956422 + 50056383 50056641 Tigger3b 1229 + 47 305 61793 40 33 16 10 6 23 169 chain 6937 chr1 248956422 + 50153950 50154028 MLT1B 390 + 280 358 77820 78 chain 4203 chr1 248956422 + 50233372 50233481 MER5C1 258 + 105 247 90103 19 7 39 36 29 30 18 chain 49978 chr1 248956422 + 50291291 50291883 L1PA6 6164 + 5569 6162 29569 58 0 1 534 chain 101887 chr1 248956422 + 50355241 50356547 Tigger1 2417 + 1083 2391 18074 760 0 1 8 0 1 403 1 0 52 0 1 82 chain 283012 chr1 248956422 + 50360654 50364154 L1PA10 4194 + 688 4161 7341 207 12 2 361 16 5 208 0 1 361 1 0 830 0 5 7 9 13 9 0 3 115 13 1 375 0 1 665 3 0 259 3 0 34 1 0 11 chain 215135 chr1 248956422 + 50373880 50377036 L1PB1 5432 + 2372 5423 9170 49 0 5 77 0 1 85 0 4 30 25 24 41 0 13 124 16 17 89 0 4 77 0 7 713 1 0 116 8 20 94 0 1 29 11 10 235 1 0 134 7 8 129 26 6 107 3 0 183 1 0 125 5 6 27 3 0 141 104 11 20 1 0 10 1 0 13 6 2 9 2 0 6 0 1 45 2 1 15 1 0 45 1 0 11 56 41 13 2 0 24 1 0 22 1 0 12 1 0 8 1 0 11 chain 139905 chr1 248956422 + 50380978 50382573 SVA_D 2077 + 0 2077 13104 604 0 40 43 0 40 191 0 136 206 0 262 454 0 4 97 chain 117728 chr1 248956422 + 50400797 50402423 L1PA13 3608 + 1785 3391 15930 135 23 22 19 0 4 26 0 1 43 0 2 28 24 26 107 5 4 13 0 2 5 0 4 184 7 5 12 21 0 8 3 0 699 2 0 26 1 0 113 2 0 59 16 15 9 1 0 35 chain 23287 chr1 248956422 + 50484860 50485115 L1PA5 6144 + 5889 6144 51948 255 chain 4277 chr1 248956422 + 50679258 50679312 MER41B 635 + 479 534 89640 29 0 1 25 chain 22956 chr1 248956422 + 50687860 50688143 AluY 311 + 7 290 52430 125 0 1 106 2 1 50 chain 55977 chr1 248956422 + 50716438 50717166 LTR12 884 + 0 884 27569 25 1 0 52 2 1 211 0 2 6 3 1 32 0 47 171 0 103 97 0 8 128 chain 35063 chr1 248956422 + 50727616 50728114 MLT2A2 560 + 0 560 37977 33 0 13 9 15 9 125 26 82 139 3 1 5 0 1 143 chain 259509 chr1 248956422 + 50760095 50762948 L1PA3long 6157 + 2401 5255 7987 2567 0 1 286 chain 105095 chr1 248956422 + 50770068 50771616 L1PA15 4387 + 2486 4013 17671 86 1 0 28 0 1 37 0 1 10 4 0 281 8 9 66 1 0 4 10 11 35 0 3 107 4 3 66 8 0 101 0 5 70 0 3 11 0 1 338 33 14 36 6 8 6 4 0 32 52 50 24 1 0 68 0 2 10 chain 9163 chr1 248956422 + 50786152 50786357 L1MB1 2102 + 1794 1996 72199 63 17 15 40 48 46 31 0 1 6 chain 5650 chr1 248956422 + 50820993 50821070 MADE1 96 + 3 96 82561 39 1 17 37 chain 67076 chr1 248956422 + 50826873 50827622 SVA_A 1864 + 1095 1841 24689 48 1 0 65 2 0 633 chain 28496 chr1 248956422 + 50831866 50832273 MER1A 529 + 116 529 44132 281 1 4 53 34 37 38 chain 79026 chr1 248956422 + 50862532 50863593 L1PB1 5432 + 1451 2543 21864 160 0 5 56 6 5 127 0 2 9 7 19 10 4 5 46 0 13 356 0 3 8 7 4 221 1 0 43 chain 130489 chr1 248956422 + 50864428 50865848 L1PA3long 6157 + 4734 6157 13982 573 0 3 847 chain 23286 chr1 248956422 + 50871830 50872093 AluY 311 + 47 311 51950 85 0 1 178 chain 6022 chr1 248956422 + 50880572 50880711 MLT1A 405 + 224 365 80995 39 34 36 15 1 2 21 5 4 24 chain 115457 chr1 248956422 + 50952086 50953407 SVA_B 1603 + 0 1601 16319 13 16 0 8 8 0 7 1 25 144 1 0 435 0 40 114 0 241 574 chain 106946 chr1 248956422 + 50997140 50999874 L1MA2 4263 + 2421 4218 17442 111 0 1 111 1 0 7 317 0 51 11 10 62 0 15 24 0 3 86 0 1 32 0 1 16 13 12 103 1 0 149 0 1 104 1 2 36 1 0 166 1 0 49 1 0 10 4 1 26 630 29 12 5 10 147 3 0 65 15 114 70 7 0 45 209 85 16 4 2 12 chain 24044 chr1 248956422 + 50998640 50998930 AluSg7 307 + 6 296 50741 31 0 1 94 2 0 79 0 1 84 chain 303978 chr1 248956422 + 51004939 51008536 L1P3 4156 + 0 3601 6744 236 11 25 59 1 0 758 0 2 256 1 0 441 0 1 349 0 1 279 0 1 230 9 4 472 0 1 68 2 1 15 8 0 402 chain 5168 chr1 248956422 + 51043431 51043493 L1MC4 1079 + 702 764 84826 62 chain 20215 chr1 248956422 + 51090691 51090971 L1M3f 2199 + 1109 1391 56121 72 1 0 62 5 8 128 1 0 7 0 1 4 chain 14026 chr1 248956422 + 51097899 51098171 L1MA5A 2387 + 2069 2305 63551 38 1 0 40 11 9 16 14 12 31 3 0 16 27 0 64 1 0 10 chain 6155 chr1 248956422 + 51101205 51101283 LTR45C 530 + 452 530 80521 78 chain 233066 chr1 248956422 + 51132430 51136303 L1PA13 3608 + 92 3362 8663 17 6 4 19 17 14 15 3 2 12 3 0 26 28 17 71 9 7 29 16 51 31 29 25 13 2 0 16 6 2 16 1 0 21 3 1 15 2 0 16 1 0 98 3 1 134 0 2 133 19 21 65 8 10 56 0 1 53 3 2 364 284 0 325 0 1 100 7 0 46 26 19 34 3 5 49 0 1 96 8 11 461 308 0 514 1 0 25 1 0 115 2 0 58 4 3 27 chain 48605 chr1 248956422 + 51161256 51163723 L1PB 1623 + 192 1453 30087 77 7 6 114 1092 478 97 0 1 44 10 15 117 659 65 99 2 0 141 1 0 7 chain 52018 chr1 248956422 + 51177917 51178610 LTR12D 1347 + 403 1347 28870 133 1 32 131 1 18 113 25 28 69 0 200 220 chain 11697 chr1 248956422 + 51214373 51214522 LTR49-int 1717 + 1265 1415 67405 16 0 1 133 chain 42993 chr1 248956422 + 51221698 51222718 LTR8 732 + 11 732 32777 4 0 1 16 0 9 52 34 8 41 317 0 14 0 6 150 16 44 127 0 1 43 60 59 146 chain 12566 chr1 248956422 + 51226974 51227121 HERV17-int 4347 + 890 1037 65864 147 chain 185857 chr1 248956422 + 51227635 51229856 HERV17-int 4347 + 12 4347 10304 15 1 0 50 4 5 31 2 0 26 1 0 193 5 435 81 11 28 275 0 2 194 2 0 121 1 2 375 0 2 206 7 1679 211 5 0 404 chain 4416 chr1 248956422 + 51248954 51249013 MER2 342 + 149 215 88803 5 0 1 7 0 6 47 chain 5160 chr1 248956422 + 51252117 51252312 Tigger2b_Pri 1066 + 879 995 84864 11 79 0 33 29 29 43 chain 3797 chr1 248956422 + 51370547 51370601 Tigger3b 1229 + 255 307 92872 40 2 0 12 chain 19303 chr1 248956422 + 51376694 51376973 Tigger1 2417 + 1318 1583 57234 21 2 1 7 0 1 68 1 0 6 18 5 156 chain 7467 chr1 248956422 + 51384141 51384272 L1MB3 1562 + 6 132 76206 15 1 0 31 17 12 55 2 3 10 chain 376979 chr1 248956422 + 51386447 51390674 L1PA4 6152 + 807 5350 5534 202 3 310 1838 0 2 5 0 1 1186 0 4 364 2 3 579 0 1 48 chain 56929 chr1 248956422 + 51411685 51412374 L1PA8 5853 + 5172 5853 27292 392 1 0 46 2 0 47 1 0 25 1 0 9 1 0 52 1 0 17 1 0 93 chain 9911 chr1 248956422 + 51556870 51557114 L1MA3 4352 + 4119 4352 70591 33 20 21 14 0 1 7 2 1 10 11 12 17 5 1 24 2 0 22 8 6 29 1 0 11 6 2 22 chain 23389 chr1 248956422 + 51562107 51562522 MSTA 426 + 0 426 51781 133 2 0 5 5 12 30 10 9 38 48 53 20 29 31 95 chain 6100 chr1 248956422 + 51674735 51675147 Tigger3a 397 + 158 363 80731 34 289 72 38 25 35 26 chain 3389 chr1 248956422 + 51684296 51684390 L1MA8 2339 + 2170 2256 96186 26 6 0 13 26 24 23 chain 4771 chr1 248956422 + 51755128 51755188 MLT1B 390 + 330 390 86846 60 chain 41006 chr1 248956422 + 51779202 51779774 L1PB1 5432 + 4114 4685 33967 50 0 4 217 0 2 49 7 13 59 3 7 114 18 1 55 chain 4130 chr1 248956422 + 51858834 51858878 MER34C 514 + 115 159 90584 44 chain 4148 chr1 248956422 + 51865646 51865708 HY3 101 + 14 101 90471 24 1 26 37 chain 161104 chr1 248956422 + 51893307 51895270 L1PA8 5853 + 3883 5847 11673 321 0 4 99 0 1 26 1 0 37 1 0 413 0 1 225 2 0 190 0 3 276 0 1 84 1 0 41 22 20 51 2 3 9 1 0 52 2 1 24 1 0 82 chain 2614 chr1 248956422 + 51906319 51906364 MLT1K 546 + 41 85 102909 25 2 0 5 1 2 12 chain 21022 chr1 248956422 + 51942793 51943101 Tigger1 2417 + 110 427 55092 148 36 43 52 0 2 72 chain 7096 chr1 248956422 + 51973419 51973499 5S 121 + 10 90 77273 80 chain 32774 chr1 248956422 + 52005562 52006015 LTR61 567 + 94 567 39693 20 0 1 30 5 7 43 3 0 30 4 0 141 0 25 116 1 0 8 1 2 9 5 4 37 chain 11411 chr1 248956422 + 52006038 52006195 MER83 447 + 0 149 67889 39 0 1 93 9 0 16 chain 75198 chr1 248956422 + 52006244 52007211 LTR5_Hs 974 + 0 974 22796 225 0 1 63 0 1 177 0 1 103 0 1 4 1 0 80 1 0 163 8 15 19 20 18 103 chain 4630 chr1 248956422 + 52034441 52034590 MER53 195 + 0 168 87644 14 0 10 42 77 86 16 chain 3512 chr1 248956422 + 52045289 52045330 L1MC2 1988 + 1724 1765 95151 41 chain 4499 chr1 248956422 + 52045868 52045917 MLT1C 463 + 357 406 88332 49 chain 8343 chr1 248956422 + 52101927 52102089 L1MA3 4352 + 4198 4345 74042 37 4 0 25 2 0 22 1 0 6 4 3 26 20 13 15 chain 25266 chr1 248956422 + 52136685 52136971 AluSg4 309 + 9 295 48841 286 chain 148435 chr1 248956422 + 52181047 52182764 SVA_D 2077 + 6 2077 12458 26 6 0 5 1 0 877 7 6 27 11 0 40 1 355 38 0 1 7 0 1 4 5 20 5 0 1 19 0 1 638 chain 61854 chr1 248956422 + 52186286 52187218 L1PREC2 3366 + 2036 2951 25906 109 0 1 74 14 18 42 3 0 76 1 5 23 12 14 92 6 0 262 4 3 95 1 0 5 3 0 5 0 1 6 29 21 11 11 7 15 3 0 30 chain 38593 chr1 248956422 + 52285332 52285847 MER1A 529 + 2 520 35643 70 0 1 326 0 3 41 24 23 54 chain 103808 chr1 248956422 + 52389868 52392696 L1PB2 3958 + 2207 3838 17838 147 0 193 91 5 6 22 9 0 71 0 1 9 2 0 36 0 1 38 1 0 102 1 0 104 422 0 94 316 0 31 0 2 26 1 0 91 0 9 26 2 0 56 1 0 11 5 0 21 321 0 38 7 5 14 11 7 81 2 0 38 307 0 39 1 0 62 1 0 62 3 0 12 2 0 21 2 1 63 chain 4728 chr1 248956422 + 52439830 52439948 L1MB7 1623 + 1395 1491 87086 27 1 0 7 17 7 8 7 0 7 4 1 27 1 0 12 chain 9800 chr1 248956422 + 52456511 52456656 L1MC1 2226 + 1888 2027 70816 29 1 0 63 3 0 12 2 0 35 chain 3276 chr1 248956422 + 52463895 52463951 Tigger16b 258 + 69 121 97222 13 3 1 18 2 0 20 chain 4916 chr1 248956422 + 52467449 52467512 L2a 937 + 279 342 86074 63 chain 16215 chr1 248956422 + 52500136 52500351 L1MB3 1562 + 263 476 60721 163 1 0 41 1 0 9 chain 12725 chr1 248956422 + 52507613 52507790 Tigger4a 237 + 5 237 65572 93 1 47 34 0 1 8 0 7 4 0 1 37 chain 9170 chr1 248956422 + 52559489 52560722 L1MB3 1562 + 952 1552 72187 23 10 9 77 1042 411 38 14 13 29 chain 5777 chr1 248956422 + 52589321 52589397 MER51A 677 + 202 278 82023 76 chain 5365 chr1 248956422 + 52605344 52605467 MER20 218 + 43 178 83879 21 17 34 40 23 18 22 chain 8540 chr1 248956422 + 52620243 52620346 MER30 238 + 138 238 73591 61 3 0 39 chain 26567 chr1 248956422 + 52626164 52626531 Tigger1 2417 + 1170 1536 46878 89 0 2 23 8 9 76 4 0 167 chain 44888 chr1 248956422 + 52742889 52743415 SVA_C 1631 + 950 1627 31647 68 1 0 246 8 164 186 4 0 13 chain 6408 chr1 248956422 + 52744237 52744330 Tigger3 1187 + 949 1032 79643 14 9 0 15 1 0 54 chain 4812 chr1 248956422 + 52754326 52754377 U2 167 + 1 52 86639 51 chain 3076 chr1 248956422 + 52774051 52774086 MER5B 177 + 100 135 99010 35 chain 4811 chr1 248956422 + 52840788 52840880 MER41-int 2638 + 112 200 86644 53 23 18 12 0 1 4 chain 20266 chr1 248956422 + 52861448 52861705 AluSc 308 + 28 288 56058 93 3 0 149 0 6 12 chain 8152 chr1 248956422 + 52874880 52874991 Tigger1 2417 + 2245 2358 74515 6 1 0 81 0 3 23 chain 3783 chr1 248956422 + 52908558 52908604 L1MB4 1306 + 622 668 92966 46 chain 13080 chr1 248956422 + 52918842 52919190 MER1B 344 + 0 327 64965 22 115 92 84 3 0 65 44 49 15 chain 757 chr1 248956422 + 53004375 53004583 LTR7B 505 + 0 208 50451 208 chain 530868 chr1 248956422 + 53004662 53010782 L1PA5 6144 + 4 6138 1795 131 11 25 505 15 18 341 5 6 4 1 0 41 2 0 5 0 3 86 9 0 66 1 0 871 1 0 456 0 4 592 1 0 1191 0 4 1785 chain 881 chr1 248956422 + 53010785 53011027 LTR7B 505 + 210 505 50451 19 6 61 72 1 0 79 14 13 51 chain 7709 chr1 248956422 + 53156534 53156642 MSTA 426 + 289 405 75601 11 0 5 6 3 6 88 chain 27760 chr1 248956422 + 53161975 53162341 THE1C 375 + 0 374 45238 46 5 0 17 6 20 266 1 0 25 chain 24284 chr1 248956422 + 53204633 53205002 THE1D 372 + 0 372 50356 155 7 8 17 42 44 148 chain 68436 chr1 248956422 + 53205005 53205896 THE1D-int 1627 + 0 913 24348 15 8 10 124 0 3 112 4 5 123 0 7 162 3 0 144 0 12 196 chain 6202 chr1 248956422 + 53219220 53219298 L1MA5A 2387 + 2229 2306 80349 66 1 0 11 chain 3544 chr1 248956422 + 53263023 53263107 LTR33 499 + 407 494 94911 33 30 33 21 chain 81841 chr1 248956422 + 53399203 53400167 LTR13A 966 + 3 966 21273 82 1 0 168 0 1 367 1 0 345 chain 8102 chr1 248956422 + 53424224 53424323 LTR49-int 1717 + 1352 1451 74637 99 chain 29751 chr1 248956422 + 53424336 53424762 LTR7B 505 + 0 499 42303 105 0 10 60 0 38 12 3 27 26 0 2 42 0 1 42 1 0 23 0 1 24 1 0 20 22 21 45 chain 296283 chr1 248956422 + 53424768 53428332 HERVH-int 3825 + 0 3825 6940 212 0 11 309 5 0 38 2 1 9 1 0 23 0 13 15 7 45 22 2 1 80 1 0 21 2 3 89 0 1 177 13 14 144 15 0 347 0 1 567 0 4 916 16 18 39 0 210 193 0 1 73 0 2 226 chain 29665 chr1 248956422 + 53429599 53430016 LTR7B 505 + 0 490 42417 105 0 10 60 0 38 12 3 27 26 0 2 38 0 1 43 1 0 26 0 1 24 1 0 28 14 13 36 chain 30393 chr1 248956422 + 53449414 53449824 LTR7 482 + 0 482 41682 69 8 46 109 0 1 33 0 32 129 13 14 49 chain 19096 chr1 248956422 + 53450558 53450761 L1PA2 6032 + 5829 6032 57447 203 chain 5954 chr1 248956422 + 53744828 53744900 L1MB5 1630 + 979 1051 81259 72 chain 401875 chr1 248956422 + 53811825 53817627 L1PB1 5432 + 19 5424 5132 393 2 0 51 1 0 236 11 15 48 20 23 135 0 2 24 2 1 90 1 0 357 38 24 25 18 18 395 1 4 90 0 1 302 321 0 162 1 4 76 9 0 189 3 0 158 1 0 93 0 4 51 7 8 17 1 0 389 0 1 80 2 1 4 0 1 243 0 2 76 7 9 39 0 2 517 2 1 116 30 16 114 4 0 66 34 9 196 0 2 205 0 2 11 3 0 8 8 9 13 16 11 11 3 1 49 1 0 18 1 0 13 0 2 28 1 0 16 24 12 19 11 8 11 2 0 24 1 0 17 8 7 10 1 0 16 1 0 4 chain 14352 chr1 248956422 + 53836784 53836956 L1MB5 1630 + 458 629 63109 156 1 0 15 chain 26361 chr1 248956422 + 53850680 53851026 THE1A 353 + 0 353 47176 15 2 0 32 0 1 46 1 0 49 0 9 201 chain 143062 chr1 248956422 + 53879953 53882307 L1PA8A 6298 + 4241 6285 12854 63 0 2 50 19 0 45 1 0 109 71 47 10 0 13 29 0 9 126 0 1 80 1 0 391 0 2 6 2 0 10 308 1 254 0 3 53 5 8 33 11 15 377 1 0 169 1 0 8 60 69 61 chain 8094 chr1 248956422 + 53934561 53934689 L1MB8 1703 + 1342 1472 74652 71 9 12 10 1 0 37 chain 26648 chr1 248956422 + 53938805 53939100 AluSp 311 + 13 308 46759 295 chain 119425 chr1 248956422 + 53996757 53998139 L1PA6 6164 + 4773 6162 15624 394 0 5 143 2 0 390 0 2 444 0 2 9 chain 26138 chr1 248956422 + 54185795 54186137 THE1B 368 + 0 368 47512 44 0 15 110 1 0 45 17 29 125 chain 156824 chr1 248956422 + 54232610 54234364 SVA_F 1814 + 0 1812 11953 188 0 1 206 0 1 229 40 0 76 0 40 139 0 2 55 1 0 10 0 15 261 0 37 151 0 3 398 chain 44251 chr1 248956422 + 54307542 54308064 MER41A 554 + 13 554 31981 63 0 19 459 chain 27866 chr1 248956422 + 54316357 54316656 AluYb8 318 + 0 297 45086 132 2 0 165 chain 7891 chr1 248956422 + 54412394 54412529 L1MB3 1562 + 1290 1425 75145 61 16 15 39 0 2 14 1 0 4 chain 28121 chr1 248956422 + 54466917 54467267 THE1A 353 + 0 353 44682 47 0 1 247 0 2 56 chain 123229 chr1 248956422 + 54467267 54469446 THE1A-int 1579 + 0 1574 14989 24 5 6 154 0 3 95 0 4 73 316 0 37 298 0 253 1 0 179 7 6 46 0 3 691 chain 26984 chr1 248956422 + 54469454 54469807 THE1A 353 + 2 353 46293 11 2 0 81 1 0 85 1 2 172 chain 44024 chr1 248956422 + 54503007 54503864 MER41A 554 + 0 554 32115 345 0 1 60 4 0 14 300 0 134 chain 2967 chr1 248956422 + 54527407 54527441 U6 107 + 1 35 100210 34 chain 40467 chr1 248956422 + 54630286 54630775 MER9a1 513 + 1 513 34336 243 1 23 189 0 1 56 chain 290057 chr1 248956422 + 54632094 54635753 HERVK9-int 4720 + 36 4657 7126 13 8 5 4 1 0 65 1 0 10 1 0 29 1 0 875 35 18 321 1 0 228 10 205 678 8 9 154 52 690 16 1 101 391 4 52 343 0 3 229 0 1 114 7 6 11 0 2 48 chain 38051 chr1 248956422 + 54635782 54637244 MER9a1 513 + 0 509 36032 249 0 22 83 983 0 131 1 9 15 chain 9169 chr1 248956422 + 54676000 54676171 MER53 195 + 0 195 72189 28 1 0 40 4 5 13 28 52 57 chain 17625 chr1 248956422 + 54843121 54843411 MER1B 344 + 47 344 59096 34 6 24 51 0 1 59 4 0 48 1 0 4 35 28 48 chain 44031 chr1 248956422 + 54952014 54952567 MER41A 554 + 0 554 32109 92 0 1 305 2 0 29 0 1 52 11 12 62 chain 14445 chr1 248956422 + 54958521 54958741 MER4A1 472 + 80 323 62973 25 0 10 103 7 0 5 1 0 7 11 32 61 chain 20253 chr1 248956422 + 54963582 54963921 MER51B 395 + 0 395 56076 33 17 36 31 13 19 91 1 0 4 0 1 18 5 25 36 4 15 86 chain 40710 chr1 248956422 + 55022707 55023149 LTR7 482 + 0 473 34143 260 0 31 182 chain 288582 chr1 248956422 + 55023170 55026627 HERVH-int 3825 + 0 3815 7174 466 1 119 19 29 0 15 0 37 42 2 1 54 3 4 5 0 2 15 1 0 291 13 14 147 15 0 454 4 31 359 0 1 270 0 4 97 0 1 672 8 218 259 0 2 216 chain 44502 chr1 248956422 + 55027886 55028369 LTR7 482 + 0 482 31825 284 1 0 198 chain 27633 chr1 248956422 + 55030952 55031306 THE1A 353 + 0 353 45415 108 3 2 243 chain 127447 chr1 248956422 + 55031306 55032876 THE1A-int 1579 + 0 1574 14360 12 2 4 211 3 0 555 0 1 107 0 1 36 0 1 105 0 2 539 chain 27460 chr1 248956422 + 55032881 55033231 THE1A 353 + 0 350 45625 229 0 1 4 1 0 116 chain 9657 chr1 248956422 + 55072993 55073203 L1MB3 1562 + 1376 1555 71147 31 63 34 27 1 0 55 1 0 32 chain 220522 chr1 248956422 + 55113127 55116177 L1PA7 6471 + 3549 6469 9026 51 0 4 432 0 1 64 0 1 56 0 120 291 2 0 15 0 8 46 0 1 30 0 12 396 0 1 19 0 1 66 3 0 274 10 9 174 0 3 38 0 2 22 12 14 24 1 6 38 330 39 20 11 17 45 0 1 428 2 1 150 chain 29711 chr1 248956422 + 55117446 55117770 AluYb8 318 + 0 316 42359 204 8 0 112 chain 7080 chr1 248956422 + 55182363 55182451 MLT1B 390 + 283 374 77328 23 0 3 65 chain 12376 chr1 248956422 + 55193138 55193350 MER2 342 + 137 320 66188 140 32 5 13 4 3 17 1 0 5 chain 3544 chr1 248956422 + 55262534 55262576 MER81 114 + 20 62 94918 42 chain 249380 chr1 248956422 + 55293756 55297077 L1PA6 6164 + 3023 6162 8255 159 2 3 369 1 2 140 1 0 266 1 0 875 0 1 272 0 1 44 12 12 56 0 2 45 0 96 12 0 17 444 294 0 154 18 18 145 5 0 6 chain 21883 chr1 248956422 + 55296458 55296736 L1PA6 6164 + 5879 6158 53996 125 15 16 138 chain 26640 chr1 248956422 + 55342889 55343244 THE1A 353 + 0 353 46769 15 2 0 30 9 10 41 1 0 257 chain 128464 chr1 248956422 + 55343244 55345135 THE1A-int 1579 + 0 1579 14225 367 1 2 4 1 0 203 1 0 4 0 1 404 5 6 5 1 0 318 0 1 147 313 0 117 chain 27055 chr1 248956422 + 55345135 55345488 THE1A 353 + 0 353 46188 47 0 1 46 1 0 135 0 1 4 2 1 118 chain 524977 chr1 248956422 + 55430264 55436824 L1PA7 6471 + 1 6469 2052 402 1 0 1832 24 24 274 4 5 89 146 5 62 0 1 179 2 1 22 4 6 30 0 1 167 3 7 147 1 2 121 0 1 199 0 5 33 1 0 7 0 1 188 0 19 175 3 1 305 0 1 5 0 3 208 1 2 137 0 4 58 1 2 129 4 6 309 0 1 437 1 0 35 0 1 160 1 4 337 0 1 305 1 2 10 chain 10539 chr1 248956422 + 55432893 55433016 L1PA7 6471 + 3862 3985 69338 123 chain 2099 chr1 248956422 + 55439776 55439803 L1PA7 6471 + 5463 5490 105803 27 chain 55476 chr1 248956422 + 55439803 55440456 L1PA7 6471 + 5491 6146 27730 129 0 4 79 2 0 443 chain 252401 chr1 248956422 + 55459380 55462272 L1PA5 6144 + 3247 6142 8171 41 0 1 212 1 2 943 0 1 211 0 1 148 5 6 478 5 3 848 chain 41194 chr1 248956422 + 55488281 55488740 L1PA4 6152 + 5684 6143 33846 459 chain 27342 chr1 248956422 + 55619420 55619773 THE1C 375 + 0 350 45777 179 11 7 43 0 1 120 chain 26482 chr1 248956422 + 55727847 55728209 MLT2A1 477 + 0 397 47005 142 11 12 14 1 5 8 0 36 168 6 0 12 chain 388083 chr1 248956422 + 55729054 55734482 HERVL-int 5654 + 654 5649 5350 181 9 10 193 0 2 78 4 0 183 439 10 413 0 2 145 0 1 112 5 0 77 41 42 142 55 8 20 26 23 193 0 1 4 2 14 1055 15 14 57 0 6 274 0 4 30 0 2 71 0 1 223 39 43 191 0 2 70 0 3 35 1 0 182 6 0 35 0 1 11 0 1 140 3 0 191 0 10 65 1 0 52 0 3 156 6 7 134 0 3 12 0 5 46 0 1 5 chain 3453 chr1 248956422 + 55742180 55742218 MADE1 96 - 58 96 95620 38 chain 470139 chr1 248956422 + 55760093 55766053 L1PA7 6471 + 0 6467 3851 105 0 1 55 0 1 78 0 10 112 0 1 4 7 6 21 12 13 154 3 4 113 3 4 39 19 31 324 8 9 51 12 11 4 0 1 509 0 1 268 0 1 230 2 7 460 5 7 64 6 9 285 0 468 42 2 0 121 1 0 434 0 8 925 11 4 360 3 6 142 0 3 109 1 4 40 1 0 38 1 0 31 24 11 104 0 5 349 1 2 14 0 1 253 chain 28680 chr1 248956422 + 55935620 55935934 AluYa5 310 + 0 310 43831 126 4 0 184 chain 31263 chr1 248956422 + 55952796 55953233 MLT2A1 477 + 0 477 40924 17 0 4 121 0 1 20 5 9 206 2 0 7 8 42 31 2 1 18 chain 61222 chr1 248956422 + 56037331 56038130 L1PA8 5853 + 4846 5653 26058 163 0 5 27 1 2 39 0 2 49 2 5 426 1 0 44 16 14 31 chain 67194 chr1 248956422 + 56049586 56050348 L1PA5 6144 + 4052 4812 24648 301 2 0 459 chain 276608 chr1 248956422 + 56089639 56092830 L1PA3long 6157 + 0 6157 7533 152 0 1 26 0 1 83 9 0 101 0 1 403 8 136 536 1 0 1155 0 8 132 1 2838 584 chain 40337 chr1 248956422 + 56109138 56109977 L1PBa 3878 + 1731 2253 34419 159 1 6 11 322 0 346 chain 9973 chr1 248956422 + 56124590 56124710 MER5A 189 + 17 137 70477 120 chain 4774 chr1 248956422 + 56140557 56140625 MSTC 436 + 0 65 86834 15 3 0 50 chain 22739 chr1 248956422 + 56184477 56184751 L1PA7 6471 + 6182 6456 52772 274 chain 323185 chr1 248956422 + 56271000 56274825 L1PA6 6164 + 2335 6154 6350 419 2 1 430 3 0 4 0 1 512 11 0 512 0 2 146 0 4 110 0 1 842 3 4 831 chain 3199 chr1 248956422 + 56365405 56365445 L1MC4 1079 + 31 71 97893 40 chain 360297 chr1 248956422 + 56365452 56369282 L1HS 6032 + 2202 6032 5796 3830 chain 8073 chr1 248956422 + 56391123 56391226 L1MA7 2200 + 1719 1822 74689 103 chain 61787 chr1 248956422 + 56403024 56403988 L1PB1 5432 + 4498 5420 25918 130 9 6 11 0 1 132 4 5 20 13 7 293 1 0 14 3 0 17 1 0 12 1 0 10 2 0 3 2 0 10 2 0 50 1 0 17 1 0 60 3 0 6 46 33 11 2 0 24 1 0 21 1 0 13 1 0 16 chain 44227 chr1 248956422 + 56458907 56459448 MLT2A2 560 + 7 560 31995 377 0 1 17 0 11 147 chain 323936 chr1 248956422 + 56610383 56614148 L1PA6 6164 + 2338 6158 6340 171 0 1 394 0 19 5 1 2 259 0 1 75 0 3 81 0 11 508 0 4 1202 0 1 581 1 14 214 0 1 273 chain 9080 chr1 248956422 + 56624370 56624488 THE1D-int 1627 + 1507 1622 72380 87 6 3 25 chain 21168 chr1 248956422 + 56668189 56668426 L1PA2 6032 + 5794 6031 54925 237 chain 11632 chr1 248956422 + 56734388 56734521 L1PA6 6164 + 5730 5864 67508 96 0 1 37 chain 25546 chr1 248956422 + 56734522 56734820 L1PA6 6164 + 5864 6160 48409 229 2 0 67 chain 38089 chr1 248956422 + 56774654 56775193 MLT2A2 560 + 0 560 35999 183 12 32 115 0 1 39 19 8 17 7 18 147 chain 28767 chr1 248956422 + 56776951 56777263 AluYa5 310 + 0 310 43678 123 1 0 163 1 0 24 chain 24521 chr1 248956422 + 56805613 56805975 THE1B 368 + 0 368 49995 44 0 15 110 1 0 19 8 4 114 7 6 15 8 5 36 chain 11814 chr1 248956422 + 56811292 56811557 LTR38B 592 + 18 336 67180 26 0 3 7 76 125 45 18 19 93 chain 39063 chr1 248956422 + 56833808 56834255 L1PA5 6144 + 5697 6142 35311 367 0 1 69 3 0 8 chain 41029 chr1 248956422 + 56887638 56888138 L1PA7 6471 + 5965 6467 33951 347 1 2 143 0 1 9 chain 27677 chr1 248956422 + 56903146 56903518 THE1C 375 + 0 375 45359 180 0 2 21 7 10 113 1 0 23 1 0 26 chain 6433 chr1 248956422 + 56946539 56946698 MER58A 224 + 53 214 79559 26 45 46 33 9 8 41 0 2 5 chain 5945 chr1 248956422 + 56966281 56966360 MADE1 96 + 1 96 81295 36 1 17 42 chain 28719 chr1 248956422 + 57028083 57028437 THE1A 353 + 0 353 43758 109 2 1 243 chain 125106 chr1 248956422 + 57028440 57030005 THE1A-int 1579 + 2 1574 14681 492 0 5 443 9 10 54 0 1 41 11 12 4 1 0 68 1 0 288 1 2 152 chain 25107 chr1 248956422 + 57030010 57030351 THE1A 353 + 0 353 49102 109 2 1 11 1 2 121 1 13 96 chain 74188 chr1 248956422 + 57220569 57221411 L1PA5 6144 + 5301 6141 23035 217 0 5 612 7 0 6 chain 4914 chr1 248956422 + 57320090 57320154 THE1D 372 + 0 75 86094 48 0 11 16 chain 23777 chr1 248956422 + 57471462 57471806 THE1B 368 + 0 368 51149 44 0 15 113 1 0 21 13 11 10 0 4 6 11 19 125 chain 36494 chr1 248956422 + 57472356 57472817 LTR2 463 + 0 463 37081 359 15 16 49 1 2 37 chain 28371 chr1 248956422 + 57479871 57480167 AluYg6 310 + 0 296 44312 296 chain 21324 chr1 248956422 + 57488431 57488685 AluSp 311 + 37 291 54729 254 chain 42803 chr1 248956422 + 57522629 57523176 MLT2A2 560 + 0 560 32886 75 1 2 303 0 1 25 0 11 143 chain 208707 chr1 248956422 + 57557524 57563294 HERVL-int 5654 + 1 5407 4351 97 0 1 857 60 0 131 0 1 406 5 6 194 6 11 18 14 18 151 1 0 126 0 1 909 1 0 1165 19 20 399 314 0 25 7 0 125 0 4 266 3 4 133 18 18 107 0 1 21 1 2 11 3 0 97 0 1 80 chain 536684 chr1 248956422 + 57563313 57569758 L1PA5 6144 + 3 6142 1524 575 0 1 144 0 1 25 0 1 399 0 3 275 0 9 244 0 1 632 1 0 196 1 0 241 0 1 1637 0 1 119 0 1 874 1 0 288 309 0 202 14 4 254 3 0 11 chain 8934 chr1 248956422 + 57569758 57570005 HERVL-int 5654 + 5407 5654 4351 247 chain 34285 chr1 248956422 + 57635262 57635786 MER1A 529 + 0 529 38502 171 54 46 74 6 18 148 7 8 64 chain 23778 chr1 248956422 + 57667676 57668029 L1PA8 5853 + 5494 5853 51146 70 1 0 42 10 8 64 2 1 15 6 5 41 2 1 19 1 0 43 0 13 37 chain 17320 chr1 248956422 + 57690266 57690649 MSTA 426 + 0 426 59433 55 57 82 90 84 102 97 chain 51023 chr1 248956422 + 57691090 57691760 LTR12 884 + 0 869 29207 24 1 0 54 1 67 174 0 25 33 2 0 171 0 103 103 1 9 106 chain 7577 chr1 248956422 + 57693284 57693375 LTR12 884 + 0 90 61368 24 1 0 66 chain 25581 chr1 248956422 + 57693375 57693767 LTR12 884 + 288 743 48346 33 25 0 15 28 15 27 2 0 170 0 103 92 chain 2081 chr1 248956422 + 57693408 57693433 LTR12 884 + 123 148 61368 25 chain 2081 chr1 248956422 + 57693448 57693473 LTR12 884 + 163 188 61368 25 chain 8962 chr1 248956422 + 57693775 57693885 LTR12 884 + 759 869 72646 110 chain 55879 chr1 248956422 + 57700922 57701532 L1PA4 6152 + 5359 5969 27596 610 chain 31293 chr1 248956422 + 57743131 57743560 LTR7B 505 + 0 503 40899 105 0 10 60 0 38 12 3 27 26 0 2 38 0 1 40 1 0 29 0 1 52 14 13 49 chain 84095 chr1 248956422 + 57890954 57892002 L1PA7 6471 + 5400 6468 20782 198 0 4 17 1 0 81 0 2 43 0 1 49 1 2 39 1 0 266 0 8 21 0 1 47 17 21 119 1 2 147 chain 127441 chr1 248956422 + 57912390 57913803 L1PA4 6152 + 3936 5349 14361 1413 chain 127346 chr1 248956422 + 57977795 57979333 L1PA7 6471 + 4690 6229 14382 257 3 2 672 1 0 82 0 1 70 0 3 357 1 0 95 chain 18633 chr1 248956422 + 58024626 58024995 MLT2B4 540 + 0 481 57962 29 7 12 84 0 2 78 18 28 15 28 27 16 42 138 52 chain 14285 chr1 248956422 + 58093460 58093660 MER1B 344 + 138 339 63210 127 15 16 58 chain 97967 chr1 248956422 + 58114946 58115999 L1HS 6032 + 4977 6030 18531 1053 chain 68077 chr1 248956422 + 58167159 58167996 LTR12 884 + 0 884 24436 96 25 0 23 0 25 175 0 25 25 1 23 492 chain 419367 chr1 248956422 + 58168024 58173279 HERV9-int 5642 + 0 5064 4886 502 0 6 204 0 4 79 1 0 232 240 0 80 3 0 110 28 56 259 1 0 4 5 6 82 1 0 4 0 1 651 8 10 506 0 6 1197 7 9 185 0 4 604 0 1 262 chain 4918 chr1 248956422 + 58169122 58169276 HERV9-int 5642 + 1027 1101 86068 15 85 5 54 chain 2679 chr1 248956422 + 58169168 58169198 HERV9-int 5642 + 1073 1103 102456 30 chain 70528 chr1 248956422 + 58174601 58175478 LTR12 884 + 0 884 23861 103 40 0 216 0 25 12 0 22 506 chain 83896 chr1 248956422 + 58225019 58225951 L1PA4 6152 + 5198 6132 20830 709 0 1 74 1 2 148 chain 61547 chr1 248956422 + 58285055 58285892 L1PA10 4194 + 3335 4159 25971 52 0 1 142 0 1 94 0 8 19 0 4 27 46 9 36 0 11 251 0 3 123 4 1 33 1 0 9 chain 154506 chr1 248956422 + 58321304 58323234 L1PA6 6164 + 12 6149 12086 51 1 2 394 7 6 258 8 4214 315 0 1 896 chain 3107 chr1 248956422 + 58344112 58344146 MIRb 242 + 72 106 98717 34 chain 8050 chr1 248956422 + 58407550 58407655 MER20 218 + 110 214 74750 39 1 0 65 chain 533097 chr1 248956422 + 58488962 58495247 L1PA4 6152 + 6 5969 1705 1832 322 0 919 0 1 368 1 0 2843 chain 7445 chr1 248956422 + 58528597 58528693 MER20 218 + 123 218 76257 34 1 0 61 chain 37119 chr1 248956422 + 58549230 58549710 LTR15 485 + 0 485 36670 150 0 2 41 0 1 31 12 11 205 0 2 11 8 9 22 chain 154207 chr1 248956422 + 58562465 58564249 L1PA7 6471 + 4681 6468 12099 182 5 4 754 2 0 24 0 4 151 0 1 656 0 1 10 chain 7496 chr1 248956422 + 58612863 58613086 MER49 923 + 0 224 76140 29 1 3 15 108 107 70 chain 135491 chr1 248956422 + 58623248 58624834 LTR12C 1709 + 0 1709 13489 266 0 1 342 8 9 32 0 119 68 1 0 75 0 2 198 1 0 5 3 1 106 0 4 481 chain 127726 chr1 248956422 + 58635086 58636652 THE1A-int 1579 + 0 1578 14322 246 0 10 446 1 0 4 0 1 276 7 8 159 0 1 22 13 12 193 0 1 199 chain 24540 chr1 248956422 + 58636653 58637009 THE1A 353 + 0 353 49963 15 2 0 32 0 1 48 22 21 46 2 1 189 chain 27810 chr1 248956422 + 58703778 58704222 LTR7B 505 + 0 490 45170 108 0 10 30 22 65 12 34 27 26 0 2 85 1 0 72 18 17 36 chain 41405 chr1 248956422 + 58704422 58705103 MER4A 717 + 0 692 33731 43 5 6 74 11 0 69 0 1 60 0 9 6 0 5 7 0 1 84 33 42 27 29 8 52 29 45 31 1 2 120 chain 23010 chr1 248956422 + 58748118 58748405 AluSp 311 + 19 295 52342 192 11 0 84 chain 40122 chr1 248956422 + 58771166 58771620 L1PA3long 6157 + 5701 6157 34580 449 0 2 5 chain 30162 chr1 248956422 + 58798142 58798477 L1PA4 6152 + 5801 6136 41879 335 chain 28413 chr1 248956422 + 58856328 58856681 THE1A 353 + 0 353 44247 106 5 4 42 0 1 200 chain 18020 chr1 248956422 + 58952232 58952445 THE1A 353 + 141 353 58633 161 1 0 51 chain 124989 chr1 248956422 + 58952445 58954012 THE1A-int 1579 + 0 1574 14705 865 0 1 227 2 0 5 0 2 5 1 7 462 chain 522772 chr1 248956422 + 58958138 58964275 L1PA5 6144 + 3 6138 2149 520 0 1 36 10 9 132 12 5 664 0 2 2010 0 3 296 0 1 1760 1 1 352 4 3 340 chain 5842 chr1 248956422 + 59045845 59045933 MER5A 189 + 82 171 81725 41 6 7 41 chain 3736 chr1 248956422 + 59053639 59053684 MADE2 80 + 12 57 93351 45 chain 29563 chr1 248956422 + 59103618 59103979 L1PA7 6471 + 6111 6467 42531 165 11 6 185 chain 25533 chr1 248956422 + 59166894 59167333 L1PA13 3608 + 3101 3518 48432 31 1 0 28 1 0 113 2 0 41 25 24 11 6 7 6 2 0 29 1 0 4 3 1 48 2 0 4 2 0 20 1 0 20 24 16 14 chain 33694 chr1 248956422 + 59168665 59169140 L1PA8 5853 + 5386 5853 38929 174 1 0 47 3 1 14 1 0 56 2 1 8 2 1 52 2 1 15 1 8 7 8 0 82 chain 9063 chr1 248956422 + 59169153 59169395 L1MB8 1703 + 1492 1678 72417 78 83 39 7 4 0 8 5 0 38 3 0 16 chain 368254 chr1 248956422 + 59206183 59210957 L1PA7 6471 + 0 6455 5694 194 3 4 125 0 1 77 6 2 244 0 1 560 4 0 498 0 1 6 1 0 152 0 1987 817 5 9 22 0 1 582 0 7 367 313 0 45 1 0 611 0 1 141 chain 19015 chr1 248956422 + 59233234 59233598 THE1B 368 + 0 368 57536 111 11 12 46 67 71 66 26 25 37 chain 13597 chr1 248956422 + 59246937 59247106 LTR10F 562 + 385 554 64170 169 chain 497528 chr1 248956422 + 59250823 59256548 L1PA4 6152 + 8 5740 3220 114 6 20 13 26 12 134 8 9 137 3 4 332 0 1 2826 0 1 990 4 0 147 0 7 985 chain 37381 chr1 248956422 + 59273176 59274057 L1PB3 3668 + 2937 3566 36493 51 2 0 15 28 0 77 0 2 50 37 40 11 181 0 108 1 0 95 6 5 87 63 10 9 1 0 6 2 1 14 5 16 32 chain 18061 chr1 248956422 + 59313606 59313946 L1PB1 5432 + 5114 5422 58598 24 1 0 9 1 0 10 6 2 9 2 0 52 2 1 15 1 0 44 1 0 16 14 1 26 15 12 11 2 0 26 1 0 19 1 0 13 1 0 18 chain 548795 chr1 248956422 + 59368924 59375075 L1PA3long 6157 + 0 6157 822 285 1 2 205 0 1 891 1 9 1304 1 0 462 4 0 107 0 4 1092 0 4 575 0 3 108 0 1 770 13 9 171 7 0 154 chain 487972 chr1 248956422 + 59460097 59467505 L1PA6 6164 + 170 6162 3472 4 1 0 20 6 5 164 2 0 146 2 1 140 1 0 201 1 3 28 13 5 93 0 16 614 0 4 228 1444 0 481 4 2 821 4 6 27 5 0 6 2 0 4 0 1 340 1 0 32 0 9 125 0 1 141 0 1 92 3 6 33 1 3 305 1 2 64 1 0 24 0 2 346 0 1 774 0 4 170 1 2 318 0 3 174 chain 89968 chr1 248956422 + 59462110 59463108 L1PA3long 6157 + 4798 5797 19691 454 0 1 544 chain 6397 chr1 248956422 + 59463134 59463205 L1PA3long 6157 + 5797 5868 76180 71 chain 124459 chr1 248956422 + 59471948 59473492 LTR12C 1709 + 0 1709 14786 90 0 3 185 15 15 45 0 43 83 5 6 180 0 119 68 1 0 116 50 0 118 0 47 106 0 4 399 1 0 82 chain 3983 chr1 248956422 + 59472736 59472786 LTR12C 1709 + 1112 1160 54700 4 4 2 42 chain 27716 chr1 248956422 + 59514548 59514901 THE1A 353 + 0 353 45295 34 7 8 68 1 0 243 chain 8457 chr1 248956422 + 59514976 59515080 THE1A-int 1579 + 1416 1520 72505 104 chain 36101 chr1 248956422 + 59515080 59515522 THE1A-int 1579 + 1133 1579 37340 207 0 4 235 chain 531525 chr1 248956422 + 59532995 59539005 L1PA3long 6157 + 0 6157 1774 61 3 0 5 1 5 182 0 4 61 8 11 239 0 4 196 0 144 2346 10 14 504 24 0 95 0 2 45 0 5 747 0 1 633 0 4 537 1 0 240 0 2 5 2 0 65 chain 38167 chr1 248956422 + 59576088 59576566 L1PA8 5853 + 5383 5853 35933 181 1 0 44 2 0 72 1 0 13 1 0 14 1 0 33 2 1 19 1 0 93 chain 233516 chr1 248956422 + 59584001 59586666 L1PA4 6152 + 3475 6151 8649 209 5 0 659 0 1 955 0 7 171 0 4 340 0 3 322 0 1 4 chain 547641 chr1 248956422 + 59586811 59592925 L1PA3long 6157 + 6 6137 887 1156 0 3 540 1 6 723 0 3 1508 1 0 4 0 1 762 0 1 592 1 6 826 chain 456898 chr1 248956422 + 59610536 59615861 L1PA4 6152 + 10 5355 4212 699 2 1 108 3 9 22 15 23 705 0 3 968 1 0 216 0 1 2108 0 4 478 chain 14541 chr1 248956422 + 59629037 59629215 L1PA6 6164 + 5976 6160 62853 171 0 6 7 chain 15715 chr1 248956422 + 59662631 59662874 Tigger3a 397 + 139 383 61391 123 3 1 63 24 27 30 chain 101775 chr1 248956422 + 59710197 59711450 L1PA7 6471 + 5210 6468 18089 410 1 4 130 0 2 14 3 2 21 0 2 61 11 11 454 1 2 136 2 0 9 chain 25230 chr1 248956422 + 59735925 59736286 THE1B 368 + 0 368 48899 44 6 21 96 12 11 28 7 0 70 0 1 22 1 0 75 chain 119948 chr1 248956422 + 59736321 59737856 THE1B-int 1605 + 37 1600 15547 76 1 4 311 13 38 604 5 6 395 1 0 129 chain 56068 chr1 248956422 + 59801666 59802610 L1PA11 4918 + 3746 4629 27543 354 21 27 18 0 1 114 35 15 56 5 0 16 17 10 35 3 2 13 2 0 68 2 0 13 1 0 20 44 31 15 1 0 13 2 0 11 47 33 18 chain 28407 chr1 248956422 + 59883189 59883509 L1PA8 5853 + 4680 5000 44257 320 chain 83997 chr1 248956422 + 59886762 59887745 MER11C 1089 + 0 1073 20809 55 0 91 32 1 0 389 2 1 22 3 4 82 1 0 218 0 1 178 chain 14029 chr1 248956422 + 59904098 59904266 AluSc 308 + 8 172 63545 84 4 0 80 chain 83961 chr1 248956422 + 59914344 59915366 LTR5B 1012 + 0 1012 20814 124 14 0 135 0 1 74 0 1 667 0 2 8 chain 68336 chr1 248956422 + 59921249 59922188 MER11D 897 + 0 897 24375 409 124 54 129 0 28 277 chain 9661 chr1 248956422 + 59921658 59921776 MER11D 897 - 448 570 70949 71 0 4 47 chain 4154 chr1 248956422 + 59940472 59940521 MADE1 96 + 47 96 90438 49 chain 2849 chr1 248956422 + 59955407 59955467 L1MC4 1079 + 423 465 101243 4 1 0 8 17 0 30 chain 67911 chr1 248956422 + 60002732 60003481 L1PA2 6032 + 5280 6026 24467 732 1 0 7 2 0 7 chain 27222 chr1 248956422 + 60063853 60064260 MLT2A1 477 + 0 401 45939 146 0 1 21 6 3 146 6 30 10 25 2 26 4 0 6 1 0 10 chain 42924 chr1 248956422 + 60086868 60087409 MLT2A2 560 + 0 558 32823 39 0 1 140 1 0 199 0 6 16 0 11 146 chain 27612 chr1 248956422 + 60205640 60206007 THE1C 375 + 2 375 45443 140 8 12 59 1 2 119 0 2 14 1 0 25 chain 165505 chr1 248956422 + 60208952 60210773 L1PA2 6032 + 4206 6025 11378 1813 2 0 6 chain 99080 chr1 248956422 + 60218676 60219754 L1PA3long 6157 + 5079 6157 18405 1078 chain 194521 chr1 248956422 + 60246748 60249082 HERVL-int 5654 + 3297 5654 9904 49 0 2 17 0 1 644 0 1 433 8 9 320 3 14 499 0 3 72 0 3 70 0 1 219 chain 25292 chr1 248956422 + 60250745 60251023 L1PA2 6032 + 5754 6032 48796 278 chain 76552 chr1 248956422 + 60278641 60279456 L1HS 6032 + 5216 6031 22426 815 chain 28480 chr1 248956422 + 60289266 60289580 AluYb8 318 + 0 311 44158 132 3 0 179 chain 3446 chr1 248956422 + 60365934 60365979 MER58C 217 + 163 208 95690 45 chain 22106 chr1 248956422 + 60369420 60369706 MLT2A1 477 + 0 294 53686 137 5 6 25 1 5 81 0 3 37 chain 197134 chr1 248956422 + 60380609 60382800 L1PA3long 6157 + 2186 4379 9803 1244 0 1 387 0 1 560 chain 24566 chr1 248956422 + 60382935 60383213 L1PA2 6032 + 5754 6032 49911 278 chain 5553 chr1 248956422 + 60405294 60405366 L1PB4 2604 + 2425 2500 83018 64 0 3 8 chain 880 chr1 248956422 + 60436746 60436983 LTR8 732 + 46 283 59488 97 3 0 6 0 13 92 10 0 29 chain 304588 chr1 248956422 + 60437049 60440681 L1PA5 6144 + 2512 6132 6729 114 11 0 538 3 0 345 2 0 835 0 4 1784 chain 393 chr1 248956422 + 60441295 60441401 LTR8 732 + 609 730 59488 90 0 15 16 chain 66576 chr1 248956422 + 60466635 60467362 L1PA2 6032 + 5305 6032 24801 727 chain 539361 chr1 248956422 + 60490132 60496142 L1PA3long 6157 + 0 6155 1380 152 0 1 588 0 1 35 6 145 1327 0 1 1696 0 1 2050 1 0 105 0 4 34 1 0 15 chain 144643 chr1 248956422 + 60511652 60513492 L1P1 4361 + 2524 4328 12717 102 35 0 306 0 1 244 1 0 974 1 0 131 0 1 22 1 0 23 chain 97424 chr1 248956422 + 60550725 60551778 L1PA2 6032 + 4969 6021 18601 912 1 0 140 chain 293638 chr1 248956422 + 60603419 60607453 L1PA7 6471 + 2876 6470 7024 476 0 1 150 312 0 426 0 17 722 0 4 271 0 2 304 163 11 63 11 10 33 0 1 254 1 0 77 0 2 70 2 3 229 13 12 43 16 13 167 0 1 70 20 21 141 chain 6935 chr1 248956422 + 60606089 60606171 L1PA7 6471 + 3416 3497 77827 4 1 0 77 chain 5710 chr1 248956422 + 60606172 60606243 L1PA7 6471 + 3497 3572 80953 52 0 4 19 chain 553726 chr1 248956422 + 60640012 60646037 L1PA2 6032 + 1 6032 501 298 0 1 1506 0 1 686 0 4 3535 chain 108347 chr1 248956422 + 60685065 60686565 THE1B-int 1605 + 0 1599 17272 13 4 5 90 1 4 162 0 6 8 1 4 6 3 0 79 18 82 20 3 4 29 1 2 8 3 1 57 0 15 64 18 18 11 15 16 78 0 6 222 0 3 586 chain 130190 chr1 248956422 + 60687916 60689734 L1PA11 4918 + 2782 4567 14016 4 0 1 198 6 7 5 0 1 48 0 2 5 3 1 76 0 1 13 26 13 204 15 23 946 9 5 49 14 13 9 8 0 68 2 0 15 7 6 12 6 0 10 31 22 15 1 0 13 chain 19873 chr1 248956422 + 60717624 60717902 AluY 311 + 0 311 56574 16 3 0 115 13 14 32 0 39 20 2 0 61 2 0 14 chain 65085 chr1 248956422 + 60738295 60739037 L1PA5 6144 + 5403 6144 25170 592 1 0 149 chain 23972 chr1 248956422 + 60743052 60743321 L1PA5 6144 + 5720 5989 50833 269 chain 13167 chr1 248956422 + 60743322 60743482 L1PA5 6144 + 5989 6144 64830 149 5 0 6 chain 25349 chr1 248956422 + 60766405 60766772 THE1B 368 + 0 368 48711 169 1 0 16 14 15 10 0 4 14 14 15 68 5 1 56 chain 424529 chr1 248956422 + 60770682 60782912 L1PA5 6144 + 0 6087 4819 120 1 15 10 14 0 376 4 0 32 1 0 480 0 1 189 0 1 344 0 1 281 1859 0 71 5157 857 752 5 6 299 1 9 1239 0 1 106 0 1 100 0 4 243 5 0 257 8 13 186 0 1 5 0 3 29 8 7 48 chain 70440 chr1 248956422 + 60839600 60840694 L1PA15 4387 + 3275 4350 23882 122 13 14 29 9 10 28 0 1 4 18 17 50 19 26 237 0 2 15 11 7 53 4 2 41 1 0 79 5 0 92 1 0 26 1 0 54 2 1 17 4 0 15 1 0 50 6 3 46 2 0 14 5 0 20 chain 26599 chr1 248956422 + 60844425 60844754 L1PA10 4194 + 3833 4161 46838 28 0 1 84 0 2 168 3 0 34 1 0 11 chain 3744 chr1 248956422 + 60915406 60915474 MLT1C 463 + 98 165 93300 13 2 0 7 5 6 41 chain 16753 chr1 248956422 + 61219733 61219962 AluSc 308 + 50 280 60089 85 0 1 4 14 13 4 0 1 122 chain 4321 chr1 248956422 + 61480446 61480492 MADE1 96 + 0 46 89353 46 chain 3239 chr1 248956422 + 61504281 61504353 MER3 215 + 61 142 97580 25 22 31 25 chain 13490 chr1 248956422 + 61635593 61635867 MER58B 340 + 64 340 64327 36 1 2 26 10 11 4 1 0 56 65 66 75 chain 6688 chr1 248956422 + 61647495 61647584 MER2 342 + 131 219 78678 21 1 0 67 chain 14803 chr1 248956422 + 61670195 61670435 L1PA16 3655 + 3403 3619 62528 34 0 1 140 3 0 15 16 0 4 1 0 6 5 0 16 chain 74926 chr1 248956422 + 61730328 61731204 L1PA7 6471 + 5582 6461 22861 40 0 2 679 0 1 157 chain 14715 chr1 248956422 + 61735813 61737328 LTR64 526 + 0 526 62654 71 15 2 12 6 7 11 1 0 4 0 1 85 1247 271 50 2 1 11 chain 13397 chr1 248956422 + 61759134 61759318 MER30 238 + 38 238 64480 69 4 0 8 2 23 47 0 1 8 2 0 44 chain 7718 chr1 248956422 + 61816419 61816515 U6 107 + 1 100 75569 43 0 3 53 chain 50840 chr1 248956422 + 61831211 61832028 L1PA15 4387 + 3549 4349 29259 244 1 0 21 3 5 10 10 6 24 6 7 19 2 0 47 1 0 110 10 11 51 1 0 26 1 0 54 7 6 26 6 5 36 0 1 9 13 10 37 3 1 12 6 1 21 chain 8013 chr1 248956422 + 61844538 61844654 MER44A 345 + 111 233 74858 59 2 8 55 chain 6363 chr1 248956422 + 61872334 61872413 MER84 505 + 1 80 79800 79 chain 97692 chr1 248956422 + 61885104 61886177 L1PA3long 6157 + 5072 6147 18566 315 0 2 758 chain 100194 chr1 248956422 + 61894720 61896012 THE1D-int 1627 + 0 1322 18279 38 1 0 131 0 1 235 3 26 181 0 3 350 10 13 158 7 8 178 chain 4824 chr1 248956422 + 61942964 61943086 L1MB7 1623 + 1387 1489 86572 35 1 0 7 41 23 28 1 0 9 chain 502529 chr1 248956422 + 61943140 61948953 L1PA5 6144 + 1 5873 3042 122 0 14 16 3 15 199 4 12 430 5 22 338 9 0 1144 3 1 252 0 13 1759 3 7 460 2 3 145 0 1 919 chain 5041 chr1 248956422 + 61974619 61974716 LTR36 617 + 456 552 85462 17 15 16 40 6 4 19 chain 2065 chr1 248956422 + 62054031 62054088 MADE2 80 - 0 75 105952 22 14 32 21 chain 25506 chr1 248956422 + 62244390 62244743 THE1B 368 + 0 368 48476 44 0 15 22 1 2 83 8 6 87 7 9 25 1 0 75 chain 13420 chr1 248956422 + 62255972 62256175 MER30 238 + 0 238 64440 17 20 19 59 0 38 66 3 0 23 0 1 15 chain 18698 chr1 248956422 + 62313617 62313865 L1PA8 5853 + 5608 5853 57900 67 5 4 61 2 1 19 1 0 93 chain 29297 chr1 248956422 + 62372101 62372478 MER57B1 401 + 29 401 42901 138 8 0 108 0 3 123 chain 5003 chr1 248956422 + 62428757 62428816 MLT1A 405 + 18 77 85646 59 chain 11271 chr1 248956422 + 62460358 62460550 MER2 342 + 94 295 68127 21 0 1 29 1 0 16 4 13 25 0 1 62 21 20 13 chain 185395 chr1 248956422 + 62467642 62470544 L1PB1 5432 + 2850 5391 10323 220 12 12 197 311 3 117 0 1 331 7 1 259 0 1 313 0 2 51 0 5 265 12 9 59 0 4 62 9 5 45 23 15 85 16 0 32 13 34 104 0 4 17 13 11 24 1 0 7 42 34 33 1 0 8 2 1 15 2 0 44 1 0 16 44 12 16 1 0 3 1 0 4 1 0 15 2 0 24 1 0 21 chain 121607 chr1 248956422 + 62519788 62521260 L1PA7 6471 + 4991 6466 15239 16 1 4 78 0 1 152 4 6 366 1 4 148 11 6 364 0 1 171 8 0 7 0 8 136 2 0 7 chain 327194 chr1 248956422 + 62563669 62567701 L1PA7 6471 + 2427 6464 6264 197 30 8 257 6 10 197 0 4 60 0 10 71 0 2 254 1 0 52 5 9 229 2 1 47 0 1 176 22 11 341 1 0 4 0 1 118 0 1 37 0 4 136 4 8 281 1 7 316 0 1 307 0 1 35 8 7 112 1 0 724 chain 156004 chr1 248956422 + 62567896 62570634 L1PA10 4194 + 2073 4161 12003 193 0 5 44 1 2 145 1 0 21 333 0 51 20 13 82 24 21 26 3 7 20 1 0 5 0 1 86 2 0 93 0 3 71 0 1 49 0 1 37 7 11 58 8 5 108 0 1 167 0 1 145 316 0 68 0 1 457 7 4 36 10 7 32 1 0 10 chain 9961 chr1 248956422 + 62612388 62612543 L1PA8 5853 + 5699 5853 70504 4 0 1 31 7 6 17 6 5 90 chain 77465 chr1 248956422 + 62650428 62651280 L1PA5 6144 + 5117 5969 22202 852 chain 5783 chr1 248956422 + 62664600 62664756 L1MC2 1988 + 1835 1980 81998 12 6 0 53 61 56 24 chain 134980 chr1 248956422 + 62669706 62671255 LTR12C 1709 + 0 1709 13544 309 0 1 4 1 0 385 0 159 253 1 0 5 3 1 107 0 4 481 chain 160664 chr1 248956422 + 62679765 62681545 L1PA5 6144 + 4360 6144 11706 937 0 4 843 chain 320392 chr1 248956422 + 62739588 62744038 L1PB1 5432 + 1140 5424 6399 79 0 1 175 1 0 7 2 0 5 21 11 178 0 6 24 1 2 329 0 1 106 1 13 417 16 8 866 1 2 113 0 1 128 0 2 121 20 0 216 5 6 522 18 19 68 0 2 53 0 1 182 1 0 204 0 1 28 35 34 32 1 0 3 115 0 8 3 0 24 39 32 50 2 1 16 1 0 7 26 23 14 1 0 15 3 0 7 14 5 19 8 5 14 2 0 9 1 0 15 1 0 22 1 0 12 1 0 16 1 0 4 chain 6142 chr1 248956422 + 62754111 62754274 LTR12C 1709 + 982 1067 80562 36 79 1 48 chain 3789 chr1 248956422 + 62802301 62802427 Tigger4a 237 - 96 222 92925 25 68 68 33 chain 206763 chr1 248956422 + 62812158 62814605 L1PA7 6471 + 3995 6467 9477 345 9 10 727 0 22 232 1 2 288 0 3 85 0 1 32 0 1 128 3 2 514 0 1 73 4 0 6 chain 4017 chr1 248956422 + 62877752 62877796 MADE1 96 + 52 96 91322 44 chain 37046 chr1 248956422 + 63027487 63028004 MLT2A2 560 + 0 560 36711 145 5 4 20 12 11 128 6 38 60 0 11 119 0 1 7 0 1 15 chain 46280 chr1 248956422 + 63057543 63058257 L1MA2 4263 + 3418 4110 30932 18 0 1 70 5 0 73 10 6 76 1 0 146 3 0 150 42 40 60 15 8 39 1 0 5 chain 14078 chr1 248956422 + 63097953 63098110 L1PA2 6032 + 5875 6032 63488 157 chain 14537 chr1 248956422 + 63169332 63169510 Tigger3c 601 + 359 537 62862 178 chain 8510 chr1 248956422 + 63178827 63178995 L1PB1 5432 + 5168 5323 73659 38 1 0 5 0 1 8 18 16 45 1 0 15 2 0 6 2 1 8 7 0 12 chain 73229 chr1 248956422 + 63214821 63215742 L1PA7 6471 + 5525 6469 23274 63 0 13 597 7 22 101 4 1 137 2 0 10 chain 34616 chr1 248956422 + 63220191 63220799 L1MA5A 2387 + 1534 2074 38275 25 0 1 4 6 5 73 4 3 38 37 0 18 14 16 23 21 1 95 21 7 172 0 4 9 6 5 36 1 0 5 chain 24277 chr1 248956422 + 63222049 63222329 AluSp 311 + 0 283 50378 91 0 3 189 chain 23789 chr1 248956422 + 63237675 63238429 MLT2A2 560 + 119 560 51127 72 10 11 69 0 16 17 82 84 109 332 0 63 chain 179911 chr1 248956422 + 63240555 63242477 L1HS 6032 + 3296 5218 10588 1922 chain 3277 chr1 248956422 + 63311492 63311537 MER33 330 + 66 129 97208 9 0 18 36 chain 3561 chr1 248956422 + 63333759 63333799 U7 62 + 1 41 94741 40 chain 6369 chr1 248956422 + 63336849 63337262 MLT1A0 366 + 9 110 79780 44 309 2 6 6 0 30 0 1 18 chain 53661 chr1 248956422 + 63421296 63422016 L1PA7 6471 + 5784 6457 28342 160 51 0 186 0 1 4 1 0 138 7 9 15 1 3 15 0 1 27 1 0 114 chain 63320 chr1 248956422 + 63447653 63448331 L1PA3long 6157 + 5471 6149 25557 678 chain 5617 chr1 248956422 + 63464598 63464690 L1MC4 1079 + 439 557 82719 31 1 0 11 5 32 44 chain 43309 chr1 248956422 + 63469792 63470303 MER9a2 513 + 0 513 32559 42 1 2 226 19 20 223 chain 100207 chr1 248956422 + 63472433 63473662 SVA_D 2077 + 0 1384 18278 19 1 0 6 1 0 6 1 0 6 12 0 10 0 12 149 5 1 675 0 183 20 2 0 170 0 1 4 58 37 6 0 1 78 chain 15866 chr1 248956422 + 63473662 63473915 SVA_F 1814 + 989 1291 31294 100 0 49 119 0 1 16 1 0 17 chain 91146 chr1 248956422 + 63473933 63474901 SVA_E 1901 + 923 1894 19476 723 0 3 245 chain 6115 chr1 248956422 + 63515982 63516133 L1PB4 2604 + 2339 2488 80679 31 0 1 15 2 0 32 55 54 16 chain 4878 chr1 248956422 + 63555675 63555733 L1MA8 2339 + 2010 2068 86269 58 chain 32417 chr1 248956422 + 63564378 63564917 L1PA13 3608 + 3039 3546 40024 89 1 0 27 6 5 113 2 0 63 1 0 26 1 2 27 3 0 5 2 0 47 2 0 5 2 0 20 1 0 20 6 3 15 5 0 12 1 0 6 7 1 10 4 1 10 chain 12324 chr1 248956422 + 63725149 63725342 MER31A 484 + 40 243 66258 84 18 35 16 7 0 68 chain 4379 chr1 248956422 + 63767132 63767483 LTR41B 718 + 339 712 89007 17 150 148 24 71 118 10 26 0 9 9 12 35 chain 4954 chr1 248956422 + 63793331 63793397 L1MA4 2864 + 2746 2810 85874 20 2 0 44 chain 3598 chr1 248956422 + 63796358 63796397 MER5A1 166 + 41 80 94444 39 chain 25760 chr1 248956422 + 63816244 63816604 THE1B 368 + 0 366 48081 15 2 0 21 3 8 128 2 1 21 4 0 112 5 13 47 chain 6900 chr1 248956422 + 63985466 63985591 Tigger4b 360 + 37 174 77958 13 20 21 49 3 14 40 chain 25888 chr1 248956422 + 64023815 64024192 THE1D 372 + 0 372 47884 43 12 0 107 7 8 24 0 12 7 13 7 164 chain 27995 chr1 248956422 + 64025347 64026005 L1PB1 5432 + 4860 5422 44873 38 7 5 54 1 12 82 13 12 40 3 2 12 71 0 21 1 0 9 1 0 9 24 18 44 2 1 17 1 0 45 1 0 6 33 21 17 18 15 6 2 0 20 5 4 21 1 0 13 1 0 14 1 0 4 chain 159254 chr1 248956422 + 64200492 64202268 SVA_E 1901 + 0 1883 11793 146 1 0 405 40 0 70 0 40 156 1 0 26 1 0 51 0 33 168 1 0 60 0 78 650 chain 6637 chr1 248956422 + 64224774 64224857 L1MB2 1706 + 1611 1694 78850 83 chain 338148 chr1 248956422 + 64252740 64257194 L1PA11 4918 + 8 4578 6105 7 1 0 27 2 0 29 11 8 26 11 10 13 2 0 52 1 0 33 2 0 5 2 1 559 10 12 591 0 2 30 0 2 363 0 3 32 6 7 92 21 0 163 1 3 135 0 1 19 1 0 6 3 2 19 0 4 257 0 4 22 9 7 80 2 0 84 2 0 187 0 158 159 6 0 151 1 0 70 0 1 71 0 2 169 0 1 493 1 6 90 4 11 44 4 5 57 2 1 13 3 0 6 0 1 52 19 8 14 1 0 20 4 0 9 31 22 15 1 0 13 2 0 11 chain 562063 chr1 248956422 + 64273428 64279583 L1PA3long 6157 + 0 6157 140 3105 0 1 1283 0 1 1767 chain 12928 chr1 248956422 + 64300896 64301050 L1PA6 6164 + 6012 6162 65206 144 4 0 6 chain 27980 chr1 248956422 + 64313625 64313938 AluYk4 311 + 0 311 44903 133 2 0 178 chain 2909 chr1 248956422 + 64339368 64339439 MADE2 80 - 5 77 100774 19 11 0 8 10 22 23 chain 68605 chr1 248956422 + 64373162 64373903 L1PA3long 6157 + 5416 6157 24309 741 chain 66199 chr1 248956422 + 64383883 64384882 Tigger1 2417 + 469 1385 24909 86 6 10 240 0 2 55 7 13 91 0 3 7 113 17 292 10 8 92 chain 168681 chr1 248956422 + 64414272 64416849 SVA_D 2077 + 58 2077 11167 598 39 0 71 0 1 89 40 0 81 14 14 31 55 15 35 1 0 41 2 4 53 1 0 128 49 0 89 0 49 31 0 1 4 15 14 74 127 0 395 313 0 201 chain 4386 chr1 248956422 + 64415235 64415290 SVA_D 2077 + 1257 1312 40544 55 chain 2847 chr1 248956422 + 64415552 64415593 SVA_D 2077 + 908 947 38344 4 2 0 35 chain 8818 chr1 248956422 + 64415813 64415940 SVA_D 2077 + 1129 1256 38344 127 chain 25066 chr1 248956422 + 64438429 64438720 AluYk4 311 + 8 308 49173 166 0 9 125 chain 45761 chr1 248956422 + 64461309 64461814 L1PA3long 6157 + 5652 6157 31184 505 chain 8380 chr1 248956422 + 64684043 64684149 Tigger3b 1229 + 56 538 73947 52 0 376 54 chain 49235 chr1 248956422 + 64740600 64741185 L1PA4 6152 + 5540 6152 29854 129 0 18 9 0 1 307 1 2 32 0 1 96 0 6 11 chain 106616 chr1 248956422 + 64816685 64817911 L1PA5 6144 + 4914 6143 17479 292 0 1 355 6 7 431 1 2 141 chain 5093 chr1 248956422 + 64874432 64874551 Tigger2b_Pri 1066 + 925 1043 85190 45 51 50 23 chain 118630 chr1 248956422 + 64929734 64931155 L1PA7 6471 + 5012 6467 15787 321 1 0 18 0 31 228 5 8 83 4 3 126 0 1 11 9 10 615 chain 4494 chr1 248956422 + 64936863 64936929 MADE2 80 + 1 68 88366 41 3 4 22 chain 26112 chr1 248956422 + 64957663 64957957 AluYk4 311 + 1 295 47553 294 chain 24217 chr1 248956422 + 64998580 64998932 THE1B 368 + 0 368 50469 44 11 40 7 10 0 81 2 1 117 8 6 72 chain 8519 chr1 248956422 + 65042150 65042258 MER2 342 + 138 246 73642 108 chain 23977 chr1 248956422 + 65072005 65072296 AluSc 308 + 0 297 50829 72 0 6 219 chain 26054 chr1 248956422 + 65137260 65137668 LTR7B 505 + 0 493 47652 28 0 11 69 0 10 66 35 11 17 0 88 65 1 0 23 0 1 52 14 14 38 chain 80712 chr1 248956422 + 65139799 65140762 LTR5_Hs 974 + 4 974 21488 284 0 1 422 0 2 106 8 15 37 2 0 41 1 0 62 chain 29348 chr1 248956422 + 65145438 65145836 LTR7B 505 + 0 505 42813 12 0 1 81 0 3 8 0 10 60 0 93 12 0 2 79 6 5 73 13 12 54 chain 3004 chr1 248956422 + 65396555 65396590 L2a 937 + 728 763 99804 35 chain 6594 chr1 248956422 + 65415825 65415942 U2 167 + 6 123 78988 14 20 21 58 1 0 24 chain 17276 chr1 248956422 + 65521081 65521307 MER75 514 + 279 514 59485 41 8 17 177 chain 10802 chr1 248956422 + 65574291 65574408 L1PA4 6152 + 6035 6152 68851 117 chain 21096 chr1 248956422 + 65630189 65630422 SVA_D 2077 + 1837 2071 55012 4 0 1 229 chain 522264 chr1 248956422 + 65651683 65658083 L1PA7 6471 + 0 6470 2168 688 8 9 674 14 16 67 0 11 736 0 1 318 0 2 115 1 2 251 0 4 532 0 1 113 1 8 200 4 7 73 0 1 171 6 7 302 0 1 261 1 0 7 0 1 90 7 15 271 1 0 230 1 0 353 0 2 82 3 0 327 2 3 128 0 1 55 0 1 62 0 19 145 0 15 80 6 0 7 2 0 5 chain 130727 chr1 248956422 + 65671247 65672686 L1PA3long 6157 + 4709 6147 13954 260 3 2 1176 chain 3372 chr1 248956422 + 65680642 65680683 L1ME1 1623 + 1237 1278 96373 41 chain 24912 chr1 248956422 + 65731604 65731904 AluYk4 311 + 3 298 49410 124 5 0 171 chain 9703 chr1 248956422 + 65749571 65749699 L1PA8 5853 + 5727 5853 71043 13 2 1 19 1 0 93 chain 63176 chr1 248956422 + 65778045 65778727 L1PA2 6032 + 5340 6021 25584 666 1 0 15 chain 203885 chr1 248956422 + 65780445 65783589 L1PB1 5432 + 2342 5423 9574 116 5 2 40 13 0 28 1 5 54 3 8 225 4 0 22 5 4 71 0 2 206 1 2 85 8 9 66 1 0 237 7 0 6 0 7 89 2 5 72 16 15 41 31 26 146 36 27 34 1 0 223 1 0 24 7 8 37 10 8 241 0 1 92 10 0 75 0 2 109 0 1 290 1 2 9 3 0 24 1 0 8 1 0 4 25 19 51 3 2 15 9 8 13 109 92 20 1 0 22 1 0 12 1 0 14 1 0 5 chain 3379 chr1 248956422 + 65827236 65827279 L1MCa 1829 + 572 615 96310 43 chain 133360 chr1 248956422 + 65874502 65875962 L1PA2 6032 + 4574 6030 13708 358 4 0 1098 chain 136607 chr1 248956422 + 65876798 65878897 L1PA8 5853 + 4092 5853 13376 12 0 1 38 3 0 197 5 4 65 0 2 160 2 1 45 332 0 467 1 4 476 1 0 44 2 0 71 24 22 39 2 1 19 2 1 92 chain 60050 chr1 248956422 + 65884404 65885069 L1PA5 6144 + 4677 5342 26357 665 chain 20677 chr1 248956422 + 65893328 65893701 L1PB2 3958 + 3417 3763 55526 14 6 2 5 2 0 13 2 0 59 1 4 6 29 0 25 6 12 25 0 1 35 1 0 63 2 1 25 4 0 32 0 6 18 chain 17375 chr1 248956422 + 65899670 65900016 L1PB1 5432 + 5103 5418 59388 11 1 0 24 1 0 9 1 0 9 6 2 10 2 0 9 0 1 42 2 1 16 1 0 43 1 0 5 0 1 10 14 1 30 28 23 20 1 0 21 2 1 12 1 0 14 chain 42357 chr1 248956422 + 65930375 65930921 MSTA-int 1630 + 1086 1630 33159 111 15 14 304 1 0 115 chain 189271 chr1 248956422 + 65965772 65968031 L1PA7 6471 + 4183 6470 10153 666 0 1 300 11 22 450 0 2 185 6 5 121 11 28 388 0 1 107 2 0 7 1 0 4 chain 14949 chr1 248956422 + 66061735 66061922 L1PA8 5853 + 5669 5853 62322 21 1 0 53 1 0 17 1 0 93 chain 21507 chr1 248956422 + 66067865 66068103 L1PA4 6152 + 5912 6151 54502 96 0 1 142 chain 49280 chr1 248956422 + 66118175 66118725 L1PA5 6144 + 5588 6143 29840 382 0 5 168 chain 16413 chr1 248956422 + 66125462 66125703 MER6A 605 + 357 605 60501 36 4 0 72 8 19 121 chain 28934 chr1 248956422 + 66129375 66129688 AluYa5 310 + 0 310 43430 132 3 0 178 chain 31088 chr1 248956422 + 66196623 66196971 L1PA2 6032 + 5683 6025 41062 335 6 0 7 chain 28189 chr1 248956422 + 66338736 66339037 AluYa5 310 + 0 300 44579 132 1 0 168 chain 5450 chr1 248956422 + 66382920 66382984 HERVL18-int 2198 + 595 659 83463 64 chain 318499 chr1 248956422 + 66408089 66412259 L1PA7 6471 + 2605 6468 6432 36 1 0 31 309 0 107 0 1 769 3 7 175 0 2 531 7 6 68 0 1 146 0 1 620 2 1 503 4 7 314 0 1 145 7 0 61 2 1 157 3 2 9 1 2 11 0 1 128 1 0 19 chain 15028 chr1 248956422 + 66426459 66426635 LTR12F 595 + 419 595 62232 176 chain 55845 chr1 248956422 + 66447584 66448470 MER4D1 891 + 0 875 27614 25 1 0 51 0 1 6 0 1 4 1 0 26 2 0 4 2 0 100 8 9 192 101 91 93 0 1 222 14 15 34 chain 20510 chr1 248956422 + 66461453 66461806 THE1D 372 + 0 358 55774 101 19 9 18 0 8 24 57 64 134 chain 544329 chr1 248956422 + 66480925 66486948 L1PA3long 6157 + 0 6156 1063 152 0 1 440 0 2 147 1 0 39 0 128 1293 2 1 189 0 4 3760 chain 24841 chr1 248956422 + 66511727 66512017 THE1B-int 1605 + 1 291 49531 290 chain 13377 chr1 248956422 + 66512017 66512192 MLT2A1 477 + 213 385 63616 160 3 0 12 chain 175034 chr1 248956422 + 66512421 66514871 L1PB1 5432 + 2842 5366 10830 163 4 3 339 1 2 120 6 5 160 5 101 9 0 9 171 0 1 37 0 1 23 1 0 24 0 1 102 0 1 510 19 16 93 4 5 152 5 4 21 0 9 179 26 14 21 1 0 4 5 4 12 5 1 9 2 0 51 7 6 12 3 2 40 6 5 12 24 12 19 2 0 5 8 8 6 2 0 20 chain 17328 chr1 248956422 + 66568660 66568855 L1PA8 5853 + 3486 3681 59425 195 chain 9064 chr1 248956422 + 66602541 66602639 L1PA5 6144 + 6034 6132 72412 98 chain 16555 chr1 248956422 + 66610816 66611131 L1PB1 5432 + 5144 5427 60305 12 2 0 3 2 0 9 2 0 52 2 1 15 1 0 44 1 0 11 8 4 16 9 0 16 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 8266 chr1 248956422 + 66640061 66640165 MER30 238 + 134 235 74244 56 3 0 45 chain 16848 chr1 248956422 + 66705790 66706036 L1PA8 5853 + 5611 5853 59977 67 2 1 12 1 0 49 2 1 10 10 9 93 chain 513571 chr1 248956422 + 66780142 66785999 L1PA4 6152 + 12 5828 2595 303 6 5 260 1 0 254 51 0 237 0 1 76 8 11 85 1 0 178 0 1 1017 0 7 736 1 0 984 1 2 118 0 2 1012 1 0 527 chain 32490 chr1 248956422 + 66796607 66797058 MER4A 717 + 0 463 39951 126 1 0 40 1 2 157 14 10 73 7 23 32 chain 6650 chr1 248956422 + 66799338 66799552 L1MA8 2339 + 2019 2205 78808 59 104 82 36 6 0 9 chain 44921 chr1 248956422 + 66805451 66805937 L1PA3long 6157 + 4821 5307 31624 486 chain 77692 chr1 248956422 + 66805938 66806788 L1PA3long 6157 + 5307 6157 22164 850 chain 124123 chr1 248956422 + 66880235 66881804 THE1B-int 1605 + 0 1605 14825 35 0 2 232 0 5 53 0 1 17 0 3 82 1 26 1149 chain 4167 chr1 248956422 + 66912139 66912200 MER4A1 472 + 122 182 90341 11 2 1 48 chain 178759 chr1 248956422 + 66916296 66918811 MER4-int 2692 + 108 2692 10649 10 1 0 96 0 1 7 0 3 20 0 1 195 0 5 107 28 29 25 0 4 58 5 8 48 9 12 116 0 2 151 0 2 76 0 3 9 0 2 34 0 4 36 0 1 47 0 3 89 5 0 14 2 0 65 69 78 109 0 1 173 1 3 136 1 0 75 19 24 28 16 21 83 0 2 17 0 1 44 1 0 195 1 0 85 1 0 14 0 7 24 5 8 46 0 11 7 1 0 98 2 0 11 chain 10730 chr1 248956422 + 66996891 66997091 L1MB2 1706 + 480 712 68988 107 40 71 15 5 6 33 chain 3286 chr1 248956422 + 67017978 67018016 MER4D0 881 + 282 320 97145 38 chain 111036 chr1 248956422 + 67066961 67068488 THE1C-int 1605 + 0 1599 16932 14 2 1 95 0 54 89 0 2 72 0 6 112 0 7 182 12 3 26 0 1 40 27 27 10 19 13 195 4 5 24 1 0 92 3 4 327 1 0 13 0 1 54 0 17 113 chain 13899 chr1 248956422 + 67069023 67069191 THE1C 375 + 208 375 63735 142 1 0 25 chain 52753 chr1 248956422 + 67087138 67087895 LTR17 781 + 0 753 28654 20 0 1 38 1 0 102 1 0 18 1 0 57 1 0 8 12 11 72 2 1 366 21 0 12 11 33 14 chain 126107 chr1 248956422 + 67207774 67209342 THE1A-int 1579 + 0 1579 14535 133 0 1 201 4 6 159 7 6 245 0 1 93 0 1 427 0 5 81 0 1 195 0 1 23 chain 26903 chr1 248956422 + 67209342 67209695 THE1A 353 + 0 353 46402 24 1 2 58 0 1 23 1 0 112 1 0 133 chain 33260 chr1 248956422 + 67214749 67215224 LTR2B 499 + 9 499 39295 5 1 0 60 3 0 6 34 53 175 0 1 8 1 0 48 1 0 4 0 1 129 chain 2993 chr1 248956422 + 67232630 67232670 MIR 256 + 162 202 99897 40 chain 176351 chr1 248956422 + 67275429 67277561 L1PA7 6471 + 4315 6465 10759 71 0 2 384 0 3 421 0 1 17 16 1 399 0 3 722 1 27 92 2 0 7 chain 28550 chr1 248956422 + 67288387 67288843 MLT2A1 477 + 0 477 44036 87 3 4 47 17 35 22 1 0 13 5 4 171 0 2 14 31 34 25 2 1 18 chain 325693 chr1 248956422 + 67288843 67292750 HERVL-int 5654 + 0 5225 6286 648 0 1 301 0 2 334 0 1 133 0 14 363 5 6 241 0 1273 374 0 2 664 0 2 350 0 2 46 0 6 417 0 13 6 0 1 25 chain 29838 chr1 248956422 + 67399758 67400220 MER41B 635 + 0 451 42197 121 2 6 10 0 4 100 0 1 27 5 0 4 21 0 18 1 7 48 28 28 77 chain 3036 chr1 248956422 + 67445223 67445260 MLT1G1 539 + 494 531 99451 37 chain 7255 chr1 248956422 + 67505703 67505789 MLT1A 405 + 296 382 76804 86 chain 28308 chr1 248956422 + 67509190 67509545 THE1A 353 + 0 353 44398 111 1 0 91 1 0 151 chain 76048 chr1 248956422 + 67513326 67514394 MER11A 1151 + 7 1151 22552 52 0 99 72 1 0 62 17 14 20 0 2 115 0 1 94 0 7 139 8 11 139 23 0 13 8 15 22 18 0 36 0 1 60 6 7 163 chain 63545 chr1 248956422 + 67549790 67550500 L1P1 4361 + 2646 3356 25516 556 1 2 4 1 0 148 chain 51089 chr1 248956422 + 67550500 67551054 L1PA3long 6157 + 5602 6157 29196 405 0 1 149 chain 25867 chr1 248956422 + 67554164 67554517 THE1A 353 + 0 351 47917 105 9 8 179 0 2 6 9 6 45 chain 37688 chr1 248956422 + 67602085 67602658 L1PB3 3668 + 1834 2402 36280 82 3 7 29 13 0 10 1 14 137 18 7 86 11 12 153 0 1 30 chain 8819 chr1 248956422 + 67645823 67645919 L1PA2 6032 + 5936 6032 72952 96 chain 9815 chr1 248956422 + 67658530 67658661 MER85 139 + 0 139 70792 95 7 15 29 chain 88777 chr1 248956422 + 67783485 67784465 L1PA3long 6157 + 5162 6149 19895 142 0 4 832 0 3 6 chain 6656 chr1 248956422 + 67822211 67822292 MER30 238 + 154 238 78788 42 0 3 39 chain 28445 chr1 248956422 + 67871010 67871387 THE1C 375 + 0 375 44202 183 13 12 154 1 0 26 chain 119927 chr1 248956422 + 67899059 67900777 L1PB1 5432 + 3738 5406 15551 40 4 5 236 20 8 478 8 13 110 3 0 363 0 3 109 88 66 50 1 0 18 1 0 44 1 0 6 33 21 18 9 6 14 2 0 24 1 0 22 1 0 14 chain 3008 chr1 248956422 + 67915595 67915632 MER6B 211 - 22 59 99764 37 chain 4928 chr1 248956422 + 67978014 67978075 MER53 195 + 0 61 86009 61 chain 45665 chr1 248956422 + 68031377 68031998 L1PB1 5432 + 3135 3751 31226 17 0 3 6 2 3 79 2 0 357 1 2 124 14 6 19 chain 75732 chr1 248956422 + 68057928 68058880 LTR13 1007 + 0 956 22646 73 2 0 308 4 5 306 1 3 46 0 1 73 0 1 30 12 13 97 chain 19332 chr1 248956422 + 68062658 68062962 L1PA13 3608 + 3166 3464 57199 94 0 4 9 2 0 62 1 0 27 2 1 28 8 5 21 1 2 22 2 0 7 2 0 16 chain 4884 chr1 248956422 + 68084249 68084329 MLT1J1 437 + 0 79 86237 12 11 10 57 chain 18240 chr1 248956422 + 68143528 68143760 Tigger3a 397 + 143 374 58423 22 1 0 209 chain 97167 chr1 248956422 + 68171187 68172321 L1PA7 6471 + 5330 6470 18637 194 0 1 74 0 4 20 3 0 75 1 3 594 0 2 173 chain 36610 chr1 248956422 + 68256556 68257017 LTR2 463 + 0 463 37012 75 0 1 284 14 15 88 chain 41907 chr1 248956422 + 68347640 68348714 LTR12F 595 + 0 595 33417 55 436 0 48 1 2 35 7 5 32 39 38 12 42 0 137 0 1 230 chain 6529 chr1 248956422 + 68359365 68359443 MER20 218 + 90 167 79235 69 1 0 8 chain 5334 chr1 248956422 + 68367511 68367576 MSTC 436 + 33 98 84037 65 chain 28729 chr1 248956422 + 68386003 68386437 LTR7 482 + 0 482 43745 138 74 123 44 0 1 47 2 0 129 chain 297855 chr1 248956422 + 68386439 68390303 HERVH-int 3825 + 0 3825 6890 532 188 0 38 1 0 10 129 0 24 4 55 38 1 0 20 2 1 61 1 0 132 0 1 317 19 4 208 0 1 239 8 35 585 0 1 151 0 1 666 8 218 254 6 11 222 chain 6385 chr1 248956422 + 68387022 68387093 HERVH-int 3825 + 461 532 79732 71 chain 5361 chr1 248956422 + 68387096 68387154 HERVH-int 3825 + 474 532 83904 58 chain 3720 chr1 248956422 + 68387223 68387272 HERVH-int 3825 + 532 580 93474 38 1 0 10 chain 3634 chr1 248956422 + 68387289 68387335 HERVH-int 3825 + 534 579 94160 36 1 0 9 chain 29877 chr1 248956422 + 68391562 68391992 LTR7 482 + 0 482 42153 138 38 45 28 8 50 44 0 1 13 0 2 161 chain 352213 chr1 248956422 + 68500000 68504642 L1PB1 5432 + 730 5420 5890 25 6 1 302 0 1 92 31 0 22 0 3 229 6 0 236 0 1 4 3 2 323 5 13 224 8 7 230 0 1 53 1 6 14 0 1 91 1 99 242 0 4 52 0 1 93 9 10 163 0 1 457 1 0 5 30 16 259 0 10 361 0 1 236 2 0 84 0 2 105 0 1 285 11 10 6 1 0 20 1 0 13 1 0 9 6 2 10 2 0 10 0 1 41 18 16 44 1 0 16 2 0 6 22 12 13 8 5 14 2 0 24 1 0 21 1 0 7 0 2 4 1 0 16 chain 114288 chr1 248956422 + 68553723 68556316 THE1B-int 1605 + 33 1600 16504 400 35 18 225 1 0 68 2 45 480 1 0 41 1063 13 277 chain 57458 chr1 248956422 + 68554976 68555639 L1PA6 6164 + 5135 5800 27114 180 1 0 52 0 1 10 0 1 178 0 1 242 chain 205116 chr1 248956422 + 68582213 68584652 L1PA7 6471 + 4024 6468 9533 182 2 0 465 0 4 761 0 1 45 0 1 141 0 4 510 0 1 322 4 0 7 chain 106249 chr1 248956422 + 68711546 68713361 L1PA10 4194 + 2686 4161 17535 71 22 38 67 5 0 9 6 1 84 35 0 105 10 6 159 323 0 268 0 1 324 7 24 89 1 3 181 4 1 33 1 0 11 chain 72304 chr1 248956422 + 68719199 68720118 L1PA8A 6298 + 4764 5684 23463 61 2 0 106 0 1 202 1 2 442 0 2 29 2 1 74 chain 2152 chr1 248956422 + 68765080 68765119 L1PB1 5432 + 5103 5138 105524 14 3 0 11 1 0 10 chain 9584 chr1 248956422 + 68765145 68765279 L1PB1 5432 + 5158 5287 71293 11 2 0 51 2 1 16 1 0 44 1 0 6 chain 47002 chr1 248956422 + 68801565 68802222 PABL_A 660 + 17 652 30660 87 0 2 56 15 9 105 22 1 5 0 1 299 5 7 63 chain 113863 chr1 248956422 + 68817536 68818967 LTR12C 1709 + 0 1709 16567 212 2 1 78 0 9 265 4 8 80 0 278 181 1 0 4 4 2 99 0 1 6 11 4 22 1 0 66 7 5 5 0 1 18 0 2 55 1 0 139 1 0 86 1 0 82 chain 55852 chr1 248956422 + 68863453 68864228 LTR17 781 + 3 757 27609 53 1 0 100 1 0 23 1 0 57 1 0 28 16 0 63 1 0 301 1 0 67 2 24 12 21 0 26 chain 24524 chr1 248956422 + 68884101 68884457 THE1B 368 + 0 368 49991 44 0 15 110 6 5 18 2 0 6 0 1 77 18 17 75 chain 41142 chr1 248956422 + 68888247 68888744 MER9a3 513 + 0 497 33887 13 0 1 244 1 0 239 chain 227390 chr1 248956422 + 68893582 68896207 L1PA5 6144 + 3494 6140 8832 6 0 1 171 0 21 1578 18 16 727 0 1 125 chain 540684 chr1 248956422 + 68923486 68929511 L1PA2 6032 + 0 6032 1300 250 7 6 3129 0 1 57 86 86 707 0 2 944 0 4 109 0 1 736 chain 3460 chr1 248956422 + 68964121 68964163 THE1B 368 + 326 368 95547 42 chain 165581 chr1 248956422 + 68966516 68968617 L1PA8 5853 + 3723 5853 11367 611 1 0 106 0 1 47 0 21 456 1 2 17 0 4 22 5 3 250 6 7 26 0 1 47 1 0 101 0 10 111 1 0 42 2 0 67 5 4 59 7 6 16 1 0 93 chain 443396 chr1 248956422 + 68985674 68991967 L1PA8 5853 + 50 5853 4509 22 2 0 10 1 0 13 50 14 44 19 19 128 20 8 343 16 5 159 124 24 109 0 1 141 0 1 54 7 6 65 0 1 320 315 0 207 0 1 154 0 3 42 24 10 20 1 2 44 10 0 192 1 0 174 1 2 255 15 19 155 0 3 321 3 0 5 0 3 38 0 12 190 1 2 4 1 0 264 1 3 209 1 2 31 5 6 247 1 4 21 10 11 24 2 0 181 2 1 483 18 1 104 0 4 17 3 1 273 0 1 281 1 0 44 2 0 67 15 14 51 2 1 19 4 3 90 chain 160941 chr1 248956422 + 68997421 69037355 L1PA3long 6157 + 2984 6146 11686 193 1 0 1171 37404 629 507 1 2 443 0 3 214 chain 3659 chr1 248956422 + 69035011 69035073 MLT2A2 560 + 506 560 93924 14 9 1 39 chain 181989 chr1 248956422 + 69039931 69042754 L1MA1 4479 + 228 2721 10496 48 2 0 83 38 1 57 0 2 184 2 0 63 1 4 115 5 9 189 3 1 22 0 12 163 0 2 51 2 0 203 1 0 5 1 2 141 1 3 185 0 1 227 314 0 88 2 0 29 0 1 230 6 9 16 1 0 35 5 7 102 0 3 82 2 0 64 1 0 54 chain 28420 chr1 248956422 + 69084201 69084612 L1PREC2 3366 + 2459 2865 44235 19 0 1 171 1 2 96 6 4 54 2 1 42 8 4 12 chain 24543 chr1 248956422 + 69092406 69092694 AluSp 311 + 7 295 49957 288 chain 67342 chr1 248956422 + 69108467 69109203 L1PA2 6032 + 5293 6029 24610 736 chain 81451 chr1 248956422 + 69141363 69142354 L1PA7 6471 + 5476 6467 21343 9 3 0 129 4 5 90 0 1 598 2 3 156 chain 23674 chr1 248956422 + 69170982 69171355 THE1A 353 + 0 353 51319 13 2 0 34 0 1 46 1 0 14 24 17 82 20 11 43 2 0 92 chain 6948 chr1 248956422 + 69211021 69211163 Tigger2a 444 + 238 381 77781 59 24 26 27 15 14 17 chain 18577 chr1 248956422 + 69216468 69216684 L1PA7 6471 + 6247 6468 58021 72 0 3 134 0 2 10 chain 11777 chr1 248956422 + 69243253 69243385 L1PA6 6164 + 5857 5989 67258 132 chain 14127 chr1 248956422 + 69341141 69341320 THE1B 368 + 2 180 63410 167 1 0 11 chain 29222 chr1 248956422 + 69341321 69341631 AluYa5 310 + 0 309 43013 132 1 0 177 chain 58891 chr1 248956422 + 69344888 69345644 L1PA7 6471 + 5698 6461 26705 8 2 0 151 0 6 133 0 2 308 3 5 5 2 0 62 0 1 82 chain 16058 chr1 248956422 + 69398231 69398423 AluSp 311 + 93 284 60947 27 1 0 164 chain 153381 chr1 248956422 + 69417534 69419401 L1PA7 6471 + 2356 4233 12154 163 0 2 60 0 6 52 0 2 520 0 1 190 4 5 343 0 3 82 6 1 447 chain 184576 chr1 248956422 + 69445535 69447652 L1PA4 6152 + 3204 5349 10360 11 0 11 289 0 1 190 5 15 5 0 3 797 4 7 816 chain 20918 chr1 248956422 + 69490990 69491243 AluSc 308 + 37 292 55237 110 0 2 143 chain 30418 chr1 248956422 + 69518189 69518590 MLT2A1 477 + 7 405 41663 135 0 1 25 1 5 196 0 4 12 4 0 6 8 0 14 chain 19300 chr1 248956422 + 69527458 69527822 THE1D 372 + 0 361 57237 54 43 25 101 29 31 55 19 33 41 1 0 21 chain 43522 chr1 248956422 + 69536778 69537290 L1PA5 6144 + 5632 6144 32436 349 13 13 150 chain 30077 chr1 248956422 + 69561647 69561966 AluYb9 318 + 0 318 41979 200 1 0 118 chain 86354 chr1 248956422 + 69578005 69578948 L1PA3long 6157 + 5210 6157 20353 892 0 4 51 chain 20257 chr1 248956422 + 69605041 69605343 THE1B 368 + 0 306 56070 169 1 0 29 35 0 8 0 40 60 chain 6922 chr1 248956422 + 69682629 69682742 MLT1A0 366 + 204 318 77873 16 19 20 78 chain 306593 chr1 248956422 + 69808244 69811925 L1PA7 6471 + 2790 6465 6686 43 11 10 591 20 6 57 2 0 52 0 4 27 0 1 427 1 0 100 0 1 239 0 3 1263 0 3 848 chain 108118 chr1 248956422 + 69856212 69857450 L1P1 4361 + 3081 4317 17306 1069 1 0 155 1 0 12 chain 47601 chr1 248956422 + 69903523 69904091 L1P3 4156 + 3320 3902 30437 227 0 4 325 0 10 16 chain 12379 chr1 248956422 + 69942907 69943091 MER30 238 + 37 237 66180 69 4 24 42 1 0 20 4 1 44 chain 406297 chr1 248956422 + 69967522 69973422 L1PB1 5432 + 19 5420 5067 33 3 2 48 2 4 101 0 1 69 43 43 512 0 2 26 0 2 343 1 23 71 343 0 382 0 3 850 18 18 180 1 0 5 0 1 104 1 0 375 0 1 46 5 6 32 0 1 125 27 29 69 9 12 186 5 8 385 1 0 381 0 1 9 0 4 127 1 0 72 1 0 112 30 30 226 0 4 19 188 16 20 1 0 8 1 0 12 5 1 10 3 1 42 1 0 8 2 1 16 1 0 38 6 5 10 35 22 15 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 0 1 15 chain 117816 chr1 248956422 + 70098257 70099568 L1P1 4361 + 2918 4228 15917 1233 1 0 77 chain 23799 chr1 248956422 + 70164132 70164409 AluSp 311 + 24 301 51106 277 chain 24324 chr1 248956422 + 70169028 70169379 MER83C 372 + 2 339 50300 33 1 2 42 16 0 78 5 7 10 1 0 4 1 0 127 0 1 33 chain 26665 chr1 248956422 + 70185251 70185605 THE1A 353 + 0 353 46737 47 0 1 42 6 5 103 1 0 155 chain 6252 chr1 248956422 + 70201580 70201654 L1MC2 1988 + 1028 1103 80167 16 0 1 58 chain 3977 chr1 248956422 + 70218943 70218993 MER2 342 + 136 186 91589 50 chain 4901 chr1 248956422 + 70279410 70279471 MER34B 572 + 327 388 86149 61 chain 6771 chr1 248956422 + 70298754 70298907 MER58A 224 + 41 192 78411 22 18 24 33 6 10 42 16 4 16 chain 18019 chr1 248956422 + 70363277 70363619 MER51B 395 + 0 387 58634 34 13 32 31 15 23 87 45 50 37 3 15 8 0 1 69 chain 212624 chr1 248956422 + 70368061 70370821 HERVH-int 3825 + 0 2991 9244 333 1 0 74 12 13 37 13 18 9 0 264 8 1 2 22 1 0 344 0 3 107 46 16 181 9 0 286 1 4 321 0 1 43 4 9 313 0 1 5 5 4 382 11 0 191 chain 26908 chr1 248956422 + 70461832 70462201 THE1D-int 1627 + 0 370 46399 15 16 18 4 1 0 248 0 3 6 3 0 76 chain 28186 chr1 248956422 + 70562038 70562385 HERVL-int 5654 + 1480 1826 44585 294 1 0 52 chain 3448 chr1 248956422 + 70573757 70573797 MLT2B2 565 + 525 565 95676 40 chain 288711 chr1 248956422 + 70588795 70592323 HERVH-int 3825 + 0 3816 7171 333 1 0 199 5 0 38 1 0 10 1 0 24 1 52 35 7 6 82 1 0 138 0 3 485 9 24 4 1 0 346 0 1 43 0 2 181 0 4 76 12 17 967 9 11 5 0 3 31 0 210 77 10 11 180 0 2 216 chain 22540 chr1 248956422 + 70593588 70593991 LTR7 482 + 0 482 53058 22 13 14 33 8 46 79 0 6 24 8 40 21 1 0 4 6 7 17 0 1 76 0 2 27 12 14 32 9 6 11 chain 129384 chr1 248956422 + 70613909 70615594 L1PA7 6471 + 4777 6470 14107 76 15 0 176 0 1 163 0 6 244 7 16 162 1 0 100 0 2 58 0 6 683 chain 3271 chr1 248956422 + 70623822 70623858 MLT2B4 540 + 163 199 97293 36 chain 4162 chr1 248956422 + 70648493 70648542 MLT2A1 477 + 423 471 90378 35 1 0 13 chain 102551 chr1 248956422 + 70654373 70655566 L1PA7 6471 + 5273 6470 18002 350 0 5 508 0 1 325 2 0 8 chain 20275 chr1 248956422 + 70673409 70673795 MLT2D 439 + 10 426 56045 69 10 11 107 17 18 19 24 30 53 25 24 25 7 30 30 chain 7423 chr1 248956422 + 70709279 70709381 Tigger2 2703 + 903 1003 76334 85 2 0 15 chain 74539 chr1 248956422 + 70735299 70736129 L1PA4 6152 + 4362 5192 22946 830 chain 74961 chr1 248956422 + 70751599 70752473 MER11D 897 + 0 897 22852 587 0 23 287 chain 30287 chr1 248956422 + 70794963 70795374 L1PA16 3655 + 2634 3076 41778 40 1 0 7 0 27 177 0 4 14 0 3 16 1 0 36 1 0 118 chain 22252 chr1 248956422 + 70797196 70797449 L1PA4 6152 + 5893 6152 53472 103 0 1 144 0 5 6 chain 115795 chr1 248956422 + 70802979 70804563 THE1B-int 1605 + 22 1599 16275 13 0 2 395 10 37 46 8 9 137 61 11 33 1 2 4 1 0 517 13 16 130 7 6 122 0 11 86 chain 78486 chr1 248956422 + 70816352 70817230 L1PA3long 6157 + 5269 6147 21985 878 chain 110233 chr1 248956422 + 70832759 70834353 THE1B-int 1605 + 45 1599 17048 291 0 2 92 1 26 62 2 3 81 88 0 46 63 64 180 8 17 30 0 1 31 1 4 223 0 1 141 1 0 7 0 1 217 0 5 29 chain 24985 chr1 248956422 + 70834358 70834713 THE1B 368 + 0 368 49311 15 2 0 24 0 15 112 1 0 10 1 0 14 1 4 82 18 17 75 chain 122089 chr1 248956422 + 70844266 70845843 THE1A-int 1579 + 0 1573 15181 433 0 1 67 1 0 286 5 4 331 37 34 417 chain 12563 chr1 248956422 + 70924744 70924899 MER41A 554 + 399 554 65875 155 chain 6706 chr1 248956422 + 70942752 70943015 MLT1B 390 + 126 390 78622 49 159 161 20 1 0 34 chain 26804 chr1 248956422 + 70947204 70947555 THE1A 353 + 7 353 46536 104 1 0 201 5 1 40 chain 31862 chr1 248956422 + 70985396 70985862 LTR3B_ 500 + 0 500 40448 78 1 0 55 6 5 145 0 18 41 0 3 14 0 1 45 44 21 21 0 37 16 chain 40421 chr1 248956422 + 70985887 70986407 MER41A 554 + 0 553 34367 29 6 37 27 0 1 332 0 1 126 chain 298839 chr1 248956422 + 71109039 71112364 L1PA3long 6157 + 2830 6157 6867 873 0 1 242 0 1 407 0 4 952 0 4 698 8 0 145 chain 219973 chr1 248956422 + 71122106 71125014 L1PA5 6144 + 3246 6141 9043 219 13 0 2676 chain 241999 chr1 248956422 + 71149706 71152449 L1PA5 6144 + 3406 6144 8426 1891 0 4 475 7 0 115 1 0 163 7 8 33 2 0 49 chain 50462 chr1 248956422 + 71153663 71154358 MER50 708 + 0 683 29394 52 3 0 6 12 0 45 0 1 55 12 13 270 0 1 41 1 0 18 2 4 47 1 0 130 chain 496553 chr1 248956422 + 71215829 71221326 L1PA3long 6157 + 0 6156 3246 94 0 526 147 9 137 585 0 1 2210 0 1 873 0 1 272 0 1 45 0 1 1262 chain 11542 chr1 248956422 + 71255382 71255542 MSTA 426 + 263 426 67679 43 11 14 106 chain 22847 chr1 248956422 + 71276197 71276548 THE1C 375 + 7 355 52591 118 13 10 47 14 14 110 8 9 35 1 0 5 chain 25517 chr1 248956422 + 71289717 71290082 THE1B 368 + 0 368 48457 17 2 0 23 0 5 127 3 2 28 2 0 26 0 2 35 12 13 90 chain 119259 chr1 248956422 + 71290088 71291657 THE1B-int 1605 + 6 1596 15650 426 22 49 510 28 22 74 7 0 47 1 2 280 0 4 104 0 2 70 chain 69239 chr1 248956422 + 71322742 71323909 L1PA7 6471 + 5616 6467 24171 6 2 0 167 0 1 309 313 0 7 0 2 353 4 0 6 chain 6307 chr1 248956422 + 71323919 71323997 L1PB 1623 + 1375 1452 79970 71 1 0 6 chain 25610 chr1 248956422 + 71345957 71346259 L1PA6 6164 + 5856 6158 48303 302 chain 37889 chr1 248956422 + 71378945 71379375 SVA_B 1603 + 1176 1603 36149 421 3 0 6 chain 34527 chr1 248956422 + 71396909 71397318 THE1B-int 1605 + 17 426 38339 409 chain 37035 chr1 248956422 + 71502067 71502528 LTR71A 459 + 0 459 36717 445 3 1 13 chain 32880 chr1 248956422 + 71510414 71510867 LTR71A 459 + 4 459 39601 50 0 4 7 9 5 85 0 2 43 1 2 15 1 2 226 2 0 14 chain 565481 chr1 248956422 + 71513698 71519742 L1HS 6032 + 1 6032 85 32 13 0 5999 chain 42313 chr1 248956422 + 71579995 71580467 L1PA3long 6157 + 5685 6157 33182 472 chain 189375 chr1 248956422 + 71616182 71618789 Charlie3 2679 + 20 2668 10145 13 2 0 23 8 12 6 4 0 228 6 0 6 18 28 166 11 15 163 2 17 21 0 1 212 2 1 59 20 21 147 0 8 94 0 3 113 12 21 153 2 1 5 0 1 13 16 17 705 0 1 9 0 1 101 1 3 77 7 8 108 10 3 64 chain 18161 chr1 248956422 + 71629566 71629795 L1PA7 6471 + 4413 4643 58500 74 0 1 155 chain 91426 chr1 248956422 + 71764297 71765571 HSMAR1 1287 + 0 1287 19429 106 5 6 11 1 2 403 0 1 80 0 3 144 1 5 104 48 0 9 13 66 155 1 2 34 4 0 13 0 1 142 chain 61789 chr1 248956422 + 71770728 71771457 L1PA7 6471 + 5738 6469 25916 193 1 0 207 0 1 125 0 2 203 chain 91247 chr1 248956422 + 71804452 71805523 MER11B 1079 + 0 1063 19457 264 3 0 331 1 0 175 7 2 112 0 1 178 chain 38945 chr1 248956422 + 71865271 71865755 L1PA7 6471 + 5996 6465 35400 265 16 0 190 0 1 13 chain 560410 chr1 248956422 + 71888203 71894224 L1PA2 6032 + 0 6021 161 6021 chain 25752 chr1 248956422 + 71988295 71988569 AluYb9 318 + 38 312 48089 274 chain 8376 chr1 248956422 + 72015720 72015817 LTR14B 630 + 10 109 73959 6 0 2 91 chain 83391 chr1 248956422 + 72136683 72137735 L1PA7 6471 + 5396 6470 20937 209 0 3 13 2 0 367 5 5 16 0 1 284 4 15 6 0 1 108 0 9 33 1 0 4 chain 206989 chr1 248956422 + 72213654 72216349 L1PA8 5853 + 3121 5830 9466 22 8 9 11 0 9 130 0 1 567 0 1 71 1 0 114 0 4 166 1 5 103 2 0 6 15 6 100 4 9 532 0 4 19 2 0 71 4 7 376 10 11 89 1 0 44 2 0 52 5 6 16 3 2 56 2 1 19 1 0 70 chain 41546 chr1 248956422 + 72235939 72236441 L1PA7 6471 + 5966 6470 33656 170 0 1 252 0 1 80 chain 24718 chr1 248956422 + 72271681 72272053 THE1A 353 + 2 353 49697 29 39 18 35 0 1 19 7 6 243 chain 26824 chr1 248956422 + 72382234 72382572 THE1A 353 + 13 351 46507 338 chain 166574 chr1 248956422 + 72390035 72391898 L1PA5 6144 + 2128 3991 11301 1863 chain 33462 chr1 248956422 + 72392348 72392904 L1PA16 3655 + 3059 3588 39122 33 24 1 20 0 1 5 3 0 5 9 2 75 1 0 91 16 14 117 0 1 110 1 0 4 28 36 14 chain 7532 chr1 248956422 + 72398639 72398734 MLT1D 503 + 398 493 76044 95 chain 55050 chr1 248956422 + 72404852 72405522 L1PA7 6471 + 5798 6467 27856 133 1 0 181 1 3 336 0 1 7 3 0 8 chain 68921 chr1 248956422 + 72428769 72429633 L1P2 5180 + 1836 2690 24232 485 15 0 26 0 1 44 0 4 294 chain 57911 chr1 248956422 + 72491881 72492540 L1PA5 6144 + 5466 6124 26995 174 1 0 484 chain 20831 chr1 248956422 + 72815288 72815521 L1PA3long 6157 + 3496 3730 55326 93 0 1 140 chain 75188 chr1 248956422 + 72827950 72828780 L1PA4 6152 + 5048 5879 22798 100 0 1 730 chain 132647 chr1 248956422 + 72840936 72843143 L1PB1 5432 + 3205 5423 13763 68 1 2 109 1 0 4 0 1 51 16 61 123 22 20 60 4 3 21 5 6 37 5 4 189 0 1 91 11 13 6 0 1 109 5 4 4 0 1 108 0 2 310 10 7 186 13 21 62 13 6 114 95 93 11 3 0 20 1 0 8 3 2 14 17 11 51 2 1 10 6 5 45 1 0 15 74 57 17 1 0 12 10 9 13 1 0 19 chain 545508 chr1 248956422 + 72898768 72905092 L1PA2 6032 + 0 6032 1002 339 1 3 1368 306 0 554 0 4 601 0 2 1358 0 4 592 0 1 1040 8 9 157 chain 4745 chr1 248956422 + 72917970 72918129 L1MA8 2339 + 2047 2185 86986 24 74 52 34 5 6 22 chain 224698 chr1 248956422 + 72962259 72965120 L1PA7 6471 + 3703 6463 8902 126 1 0 475 0 5 646 6 5 149 95 0 257 0 1 71 1 0 59 9 1 71 16 16 576 15 16 4 1 0 36 1 0 246 chain 7133 chr1 248956422 + 72963662 72963746 L1PA7 6471 + 4237 4321 76656 84 chain 23789 chr1 248956422 + 73039861 73040138 L1PA7 6471 + 6184 6461 51125 277 chain 11115 chr1 248956422 + 73146963 73147129 MER1A 529 + 368 529 68388 7 4 0 80 11 10 64 chain 44390 chr1 248956422 + 73183199 73184204 LTR10F 562 + 0 562 31888 79 119 0 153 0 3 8 336 0 74 0 4 86 0 6 92 1 0 57 chain 4295 chr1 248956422 + 73183570 73183617 LTR10F 562 + 168 215 89543 47 chain 9650 chr1 248956422 + 73183653 73183767 LTR10F 562 + 111 225 71162 114 chain 4853 chr1 248956422 + 73183813 73183872 LTR10F 562 + 159 218 86411 59 chain 128638 chr1 248956422 + 73193591 73195007 L1HS 6032 + 1723 3139 14201 1416 chain 129068 chr1 248956422 + 73238424 73239892 L1PA5 6144 + 3899 5367 14139 1468 chain 10043 chr1 248956422 + 73248236 73248413 Tigger3a 397 + 142 373 70324 4 1 0 35 1 4 94 24 76 18 chain 45330 chr1 248956422 + 73254108 73254709 LTR12_ 688 + 0 688 31404 163 24 7 184 0 103 42 2 3 186 chain 89701 chr1 248956422 + 73284254 73285582 L1PA8 5853 + 4532 5853 19728 59 5 6 103 4 1 305 10 12 68 3 0 5 6 9 414 7 7 43 2 1 43 2 0 70 40 38 13 13 12 17 4 3 92 chain 86144 chr1 248956422 + 73291445 73292387 L1PA3long 6157 + 5006 5947 20403 11 1 0 930 chain 120638 chr1 248956422 + 73343450 73345017 THE1B-int 1605 + 0 1600 15424 416 9 34 4 0 1 505 0 1 186 6 10 338 4 5 18 0 1 81 chain 34967 chr1 248956422 + 73359105 73359569 LTR71A 459 + 0 459 38042 56 4 0 141 8 9 239 2 0 14 chain 88165 chr1 248956422 + 73407316 73408374 MER11C 1089 + 0 1073 20012 225 0 5 20 0 1 62 0 4 371 0 4 45 0 1 335 chain 34910 chr1 248956422 + 73431081 73431475 L1PA5 6144 + 3429 3823 38088 394 chain 24964 chr1 248956422 + 73439871 73440209 THE1B 368 + 0 344 49343 15 2 0 22 0 5 130 1 0 10 0 2 8 3 5 147 chain 93846 chr1 248956422 + 73449772 73450841 L1PA3long 6157 + 5102 6157 19062 910 0 7 99 30 9 30 chain 127451 chr1 248956422 + 73470459 73471859 L1PA4 6152 + 4751 6151 14359 1400 chain 84753 chr1 248956422 + 73562562 73563591 L1PA7 6471 + 5439 6466 20672 163 2 1 5 0 1 12 1 0 48 1 0 4 0 1 462 1 0 330 chain 122599 chr1 248956422 + 73665396 73666966 THE1A-int 1579 + 0 1579 15097 49 1 0 4 11 10 143 1 2 33 0 3 620 5 6 26 5 6 374 0 4 227 3 4 68 chain 61766 chr1 248956422 + 73806987 73807690 L1PA4 6152 + 5438 6142 25922 404 0 1 299 chain 4619 chr1 248956422 + 73817050 73817107 L1M1 2793 + 1726 1783 87700 57 chain 8614 chr1 248956422 + 73829398 73829507 MER85 139 + 7 126 73419 81 0 10 28 chain 3596 chr1 248956422 + 73855019 73855064 MER53 195 - 12 57 94459 45 chain 12039 chr1 248956422 + 73903603 73903780 L1MA1 4479 + 3930 4102 66782 17 1 0 5 3 0 126 10 9 15 chain 95108 chr1 248956422 + 73967128 73968431 L1PA8 5853 + 4553 5853 18894 48 5 7 114 4 5 214 6 6 63 2 0 47 0 1 20 2 0 483 9 12 37 2 0 60 20 18 56 2 1 18 1 0 90 chain 184874 chr1 248956422 + 74014365 74016925 L1P2 5180 + 3 2542 10345 131 18 17 42 2 1 46 57 121 30 14 13 42 19 0 69 1 0 47 54 3 174 22 1 47 0 15 447 0 1 181 0 5 715 1 2 166 12 0 223 chain 2407 chr1 248956422 + 74018524 74018618 Arthur1A 176 + 62 160 104127 16 13 5 12 31 43 22 chain 158650 chr1 248956422 + 74029984 74031767 L1PA5 6144 + 4346 6139 11834 179 0 1 85 0 9 1519 chain 155015 chr1 248956422 + 74038503 74040869 L1PA10 4194 + 175 2511 12055 12 5 3 7 3 0 10 2 0 5 54 46 14 2 0 15 69 42 6 2 0 21 92 73 59 2 0 5 1 0 5 0 1 156 8 6 96 6 7 127 0 1 45 4 3 185 1 43 530 0 2 65 7 0 57 1 2 541 6 8 107 2 0 31 chain 250266 chr1 248956422 + 74044474 74047585 L1PA7 6471 + 3315 6453 8227 39 1 2 193 0 4 19 0 1 71 1 0 88 0 1 521 5 6 293 1 0 4 0 1 116 0 4 582 3 6 65 0 7 284 2 0 311 0 8 353 14 16 8 2 0 135 chain 433391 chr1 248956422 + 74097068 74102069 L1PA5 6144 + 1152 6144 4697 36 16 0 234 0 1 11 4 9 917 0 2 802 2 1 1592 1 0 398 0 1 988 chain 45735 chr1 248956422 + 74122456 74122967 L1PA4 6152 + 4767 5278 31193 511 chain 136860 chr1 248956422 + 74130755 74132352 L1PA5 6144 + 3004 4611 13351 287 14 20 61 1 2 616 1 0 351 0 4 266 chain 134333 chr1 248956422 + 74132352 74133871 L1PA5 6144 + 4620 6144 13613 265 0 1 436 0 3 626 4 5 188 chain 68942 chr1 248956422 + 74137282 74138103 L1PA7 6471 + 5649 6468 24227 620 0 1 189 3 0 9 chain 48831 chr1 248956422 + 74166780 74167751 L1PB1 5432 + 4645 5422 30001 69 1 0 83 1 9 11 11 5 195 6 0 86 13 11 24 1 0 6 1 0 12 2 0 3 2 0 9 2 0 52 2 1 48 153 0 11 1 0 16 1 0 6 62 42 26 1 0 22 1 0 12 1 0 18 chain 17899 chr1 248956422 + 74177248 74177486 MLT2A1 477 + 208 475 58762 115 1 0 61 5 1 10 5 39 41 chain 25128 chr1 248956422 + 74186955 74187314 L1PB2 3958 + 3461 3838 49075 34 0 16 34 1 0 43 1 9 20 1 0 64 1 0 71 2 0 23 1 0 63 chain 59177 chr1 248956422 + 74211282 74211932 L1PA3long 6157 + 5507 6157 26613 650 chain 25112 chr1 248956422 + 74255109 74255373 AluYa5 310 + 37 301 49096 264 chain 30746 chr1 248956422 + 74324921 74325363 LTR22A 463 + 0 461 41356 223 15 16 5 0 1 12 1 0 73 8 27 63 2 0 22 0 1 18 chain 28015 chr1 248956422 + 74394410 74394762 LTR71B 605 + 0 360 44843 103 0 1 22 5 15 5 2 0 81 1 0 133 chain 5706 chr1 248956422 + 74396999 74397067 LTR18B 584 + 329 397 82313 68 chain 11244 chr1 248956422 + 74402794 74402948 MER30 238 + 31 204 68172 17 5 0 56 1 25 75 chain 12716 chr1 248956422 + 74406257 74406435 MER30 238 + 46 238 65590 53 0 25 6 4 0 6 7 0 102 chain 84141 chr1 248956422 + 74447377 74448273 L1HS 6032 + 5136 6032 20772 896 chain 87967 chr1 248956422 + 74449468 74450416 L1PA2 6032 + 2078 3026 20054 948 chain 5661 chr1 248956422 + 74492632 74492778 L1MB5 1630 + 1091 1239 82505 45 1 0 4 58 61 38 chain 25256 chr1 248956422 + 74500355 74500632 AluYa5 310 + 36 310 48858 61 2 0 35 1 0 178 chain 108160 chr1 248956422 + 74532685 74533873 L1PA3long 6157 + 4766 5958 17300 522 0 4 666 chain 372092 chr1 248956422 + 74554024 74558575 L1PA7 6471 + 1848 6464 5619 426 0 1 157 0 1 275 0 3 93 0 1 801 1 0 43 0 60 333 7 6 149 0 7 729 19 16 671 2 1 66 10 9 190 2 0 421 0 1 156 chain 3927 chr1 248956422 + 74597811 74597858 L1PREC2 3366 + 2698 2745 91937 47 chain 79560 chr1 248956422 + 74670441 74671608 MER11A 1151 + 0 1151 21732 55 0 99 76 1 0 62 10 6 19 0 1 125 0 3 92 0 1 296 75 1 26 43 0 58 0 1 46 1 0 16 4 5 42 4 5 116 chain 2747 chr1 248956422 + 74716343 74716372 MLT2D 439 + 410 439 101993 29 chain 123609 chr1 248956422 + 74756184 74757756 THE1B-int 1605 + 0 1600 14913 358 6 10 62 1 26 325 17 16 803 chain 74000 chr1 248956422 + 74787744 74788555 L1PA3long 6157 + 5300 6157 23093 583 1 47 227 chain 9857 chr1 248956422 + 74803073 74803192 MER85 139 + 10 139 70707 79 0 10 40 chain 2838 chr1 248956422 + 74804105 74804135 LTR23 429 + 317 347 101336 30 chain 535095 chr1 248956422 + 74877121 74883154 L1PA3long 6157 + 0 6157 1616 152 18 19 50 4 0 215 3 1 339 0 128 525 0 1 1126 1 0 4 0 1 110 0 1 232 0 1 1662 2 1 624 0 1 959 2 0 5 chain 122721 chr1 248956422 + 74884384 74885954 THE1B-int 1605 + 0 1599 15076 426 0 25 228 32 36 884 chain 4269 chr1 248956422 + 74888276 74888336 L1P5 443 + 51 114 89704 48 1 4 11 chain 103866 chr1 248956422 + 74901063 74902215 L1PA4 6152 + 4999 6151 17832 1152 chain 113546 chr1 248956422 + 74921646 74923006 L1PA6 6164 + 4779 6154 16606 199 0 1 89 7 1 245 0 1 657 29 48 134 chain 15512 chr1 248956422 + 74923282 74923472 L1PREC2 3366 + 2148 2340 61632 135 0 2 55 chain 462870 chr1 248956422 + 74986518 74991824 L1PA4 6152 + 6 5349 4054 821 25 8 326 0 3 80 1 0 495 1 0 947 0 1 298 0 41 157 1 0 227 0 4 418 0 9 803 0 1 156 3 0 385 0 1 162 chain 89430 chr1 248956422 + 75016163 75017390 L1PA11 4918 + 3286 4519 19769 380 2 1 31 0 16 137 1 2 90 7 5 4 0 1 254 0 5 101 2 1 17 5 0 57 7 6 13 2 1 66 2 0 14 1 0 11 0 1 8 4 0 11 chain 92699 chr1 248956422 + 75042540 75043724 L1PA8 5853 + 4672 5853 19235 162 0 1 156 1 0 16 0 2 75 0 2 476 1 0 45 3 1 70 2 1 9 1 0 52 2 1 11 9 8 93 chain 120901 chr1 248956422 + 75046217 75048654 L1MA1 4479 + 2063 4162 15361 19 2 3 21 0 1 69 7 121 36 18 11 67 0 1 35 0 3 6 3 1 52 1 2 5 1 0 45 0 3 17 0 4 17 3 0 37 2 0 29 1 0 93 0 3 9 2 0 31 1 0 62 1 0 70 1 4 18 1 0 26 3 1 173 7 5 12 4 0 51 495 78 77 6 0 8 3 0 129 1 0 25 1 0 16 35 36 73 1 0 46 1 0 25 3 1 12 14 13 36 1 2 23 1 0 19 2 0 14 1 0 88 9 5 100 0 1 16 10 9 29 2 0 29 7 6 9 1 0 11 chain 5792 chr1 248956422 + 75059092 75059158 L1MA2 4263 + 3023 3089 81963 66 chain 501072 chr1 248956422 + 75257752 75264139 L1PA7 6471 + 0 6470 3099 218 1 0 4 24 32 140 6 10 251 12 27 68 1 0 138 14 15 216 21 22 1093 0 1 6 0 1 259 0 2 129 0 3 164 0 1 575 0 2 171 14 18 438 3 7 130 0 20 26 1 4 9 1 0 116 0 3 109 4 9 225 24 28 183 0 1 413 0 2 65 1 0 68 2 3 196 1 0 117 1 2 716 1 2 12 chain 22783 chr1 248956422 + 75280566 75280946 THE1C 375 + 0 375 52697 14 2 0 32 73 71 232 1 0 26 chain 29420 chr1 248956422 + 75354348 75354683 LTR14A 344 + 0 337 42709 14 0 2 321 chain 534706 chr1 248956422 + 75375826 75388208 L1PA2 6032 + 3 6016 1635 698 3 10 247 0 3 311 6392 13 4731 chain 76245 chr1 248956422 + 75377085 75378053 LTR5_Hs 974 + 0 974 22501 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 275260 chr1 248956422 + 75378053 75381689 HERVK-int 6823 + 0 6567 7573 5 1 0 11 1 0 3 1 0 23 1 0 20 1 0 38 1 0 21 19 16 13 12 0 306 1 0 206 2 0 26 1 0 19 1 0 312 1 0 440 1 0 369 2 0 7 1 0 662 0 2807 189 9 297 58 1 0 36 1 0 124 1 0 49 3 0 4 1 0 7 1 0 7 1 0 72 2 0 7 1 0 24 17 11 11 1 0 20 2 0 3 1 0 8 1 0 5 172 101 9 2 0 12 1 0 14 3 1 11 2 0 30 8 3 7 1 0 3 1 0 10 10 6 10 11 5 7 1 0 8 1 0 5 1 0 26 1 0 4 1 0 12 35 26 17 1 0 4 chain 76245 chr1 248956422 + 75382490 75383458 LTR5_Hs 974 + 0 974 22500 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 529649 chr1 248956422 + 75402390 75408862 L1PA7 6471 + 0 6464 1842 333 8 0 31 8 9 19 1 0 18 0 2 265 6 6 605 0 1 527 0 1 84 1 2 220 0 1 233 0 1 279 1 2 41 0 4 7 13 9 96 9 0 686 10 4 42 0 1 392 6 0 6 12 18 83 0 1 287 0 3 636 8 7 657 8 6 184 0 1 123 1 0 183 0 5 343 chain 10123 chr1 248956422 + 75409002 75409170 L1PA16 3655 + 3397 3578 70160 76 14 25 11 5 7 62 chain 122478 chr1 248956422 + 75415518 75417082 THE1B-int 1605 + 0 1596 15118 115 0 1 312 3 28 81 0 1 284 17 18 68 0 1 567 2 0 22 1 0 10 0 6 82 chain 3413 chr1 248956422 + 75427607 75427645 MIR 256 + 5 43 95968 38 chain 552840 chr1 248956422 + 75476268 75482430 L1PA3long 6157 + 6 6157 556 1029 2 1 131 0 3 964 0 1 409 0 1 643 0 1 506 1 0 1922 18 3 537 chain 102773 chr1 248956422 + 75591571 75593118 L1MA1 4479 + 2597 4134 17978 5 3 0 41 0 1 26 2 1 100 2 0 33 1 0 58 10 5 71 0 1 18 2 1 19 10 8 167 0 9 9 11 0 41 0 1 39 17 12 13 0 1 112 3 0 8 1 25 96 2 0 197 1 0 24 2 0 16 1 0 71 32 29 4 1 0 20 0 4 42 1 2 6 1 0 14 9 5 121 6 5 27 2 0 29 chain 54050 chr1 248956422 + 75596247 75596975 L1PA13 3608 + 2173 2896 28211 75 12 7 86 10 6 132 18 19 82 0 3 313 chain 14801 chr1 248956422 + 75601205 75601378 L1PA7 6471 + 6140 6313 62532 173 chain 12714 chr1 248956422 + 75601387 75601538 L1PA7 6471 + 6314 6465 65595 151 chain 23574 chr1 248956422 + 75607557 75607911 THE1B 368 + 7 368 51469 4 1 0 127 0 4 27 1 0 17 21 28 18 13 11 125 chain 41166 chr1 248956422 + 75634377 75634822 L1PA3long 6157 + 4710 5155 33865 445 chain 90291 chr1 248956422 + 75634822 75635817 L1PA3long 6157 + 5160 6157 19626 712 0 3 140 1 0 142 chain 36477 chr1 248956422 + 75666274 75666729 L1P3 4156 + 3651 4095 37090 92 18 7 345 chain 9982 chr1 248956422 + 75674681 75674810 L1M1 2793 + 1261 1383 70458 8 7 0 114 chain 537339 chr1 248956422 + 75677750 75683758 L1PA3long 6157 + 3 6149 1493 5 3 0 145 0 1 210 0 1 403 8 136 1480 0 1 383 0 1 814 0 5 772 0 4 1785 chain 465172 chr1 248956422 + 75697646 75703034 L1PA4 6152 + 8 5515 3986 147 1 2 423 2 1 126 7 0 63 0 128 916 0 1 258 26 21 107 0 2 1477 0 1 954 1 0 880 chain 48641 chr1 248956422 + 75714103 75716749 L1PA15 4387 + 2242 4292 30071 207 5 7 46 14 16 53 1 40 116 19 3 94 0 13 23 1814 1180 58 7 6 27 2 10 44 1 0 27 29 24 34 3 0 22 chain 6661 chr1 248956422 + 75721439 75721521 MER30 238 + 154 233 78767 41 3 0 38 chain 3660 chr1 248956422 + 75722248 75722354 LTR10C 591 + 0 104 38109 32 2 0 72 chain 36441 chr1 248956422 + 75722360 75722857 LTR3B_ 500 + 0 500 37113 76 1 0 222 3 4 57 0 1 47 15 17 76 chain 13844 chr1 248956422 + 75722857 75723258 LTR10C 591 + 104 510 38109 135 1 2 129 0 6 77 42 40 17 chain 115502 chr1 248956422 + 75755826 75757243 L1P2 5180 + 3749 5178 16309 93 5 4 26 0 2 19 2 3 67 0 2 38 0 3 347 1 5 314 0 2 301 0 2 112 1 0 47 1 0 38 1 0 4 chain 52857 chr1 248956422 + 75758506 75759210 LTR12 884 + 0 884 28619 25 1 0 30 0 41 127 0 2 99 0 25 28 2 0 171 0 103 97 0 8 50 13 17 61 chain 480174 chr1 248956422 + 75777596 75783742 L1PA4 6152 + 10 6152 3632 103 14 28 16 32 28 31 3 2 18 0 1 5 7 6 233 8 7 44 0 1 426 25 0 123 14 17 75 111 102 969 0 12 140 1 4 163 1 0 125 7 6 488 2 0 19 0 1 6 1 0 414 0 3 56 0 2 42 0 1 95 5 18 47 1 2 527 0 1 816 23 0 71 0 4 224 0 2 600 0 3 15 chain 75924 chr1 248956422 + 75820782 75821605 L1P1 4361 + 2358 3181 22601 823 chain 72945 chr1 248956422 + 75827034 75827935 L1PA8 5853 + 1387 2271 23324 22 3 2 166 0 2 447 26 7 225 0 1 12 chain 476127 chr1 248956422 + 75828831 75834563 L1PA5 6144 + 0 5767 3719 120 1 15 18 3 15 359 1 0 282 17 0 9 1 18 304 0 5 24 9 0 435 1 0 309 0 1 400 0 1 253 0 3 108 0 1 828 0 1 321 7 6 44 1 2 176 0 1 722 1 3 436 1 2 71 1 5 469 chain 84431 chr1 248956422 + 75839616 75840529 L1PA3long 6157 + 5094 6007 20728 913 chain 13596 chr1 248956422 + 75840529 75840678 L1PA3long 6157 + 6008 6157 64174 149 chain 87430 chr1 248956422 + 75842385 75843390 LTR13 1007 + 0 1007 20147 381 2 3 508 0 1 114 chain 51234 chr1 248956422 + 75948888 75949479 LTR10C 591 + 0 591 29153 229 2 0 279 0 2 81 chain 87440 chr1 248956422 + 75960620 75961707 MER11B 1079 + 0 1079 20142 259 3 0 301 36 35 144 0 1 32 6 0 44 2 0 63 0 1 176 0 2 21 chain 4132 chr1 248956422 + 76051444 76051494 L1PA7 6471 + 4880 4930 90555 50 chain 41345 chr1 248956422 + 76058128 76058874 L1PB1 5432 + 4763 5422 33765 47 1 0 52 0 1 235 8 5 14 59 0 21 3 6 14 19 12 50 2 1 14 2 1 44 1 0 16 25 15 15 9 6 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 238627 chr1 248956422 + 76171385 76174425 L1PA8A 6298 + 3314 6289 8503 21 46 8 23 1 0 25 4 1 18 1 2 284 50 12 11 9 1 158 0 1 83 4 1 165 1 2 227 0 1 64 0 1 208 0 1 445 0 1 409 1 0 546 0 19 108 25 26 103 chain 31606 chr1 248956422 + 76222148 76222554 L1PA15 4387 + 3410 3824 40656 89 1 10 298 2 1 16 chain 49594 chr1 248956422 + 76312069 76312672 L1PA7 6471 + 5100 5693 29729 207 0 5 309 15 0 72 chain 3299 chr1 248956422 + 76396623 76396667 LTR54B 464 + 409 452 97022 22 1 0 21 chain 114642 chr1 248956422 + 76446936 76448506 THE1B-int 1605 + 0 1605 16446 253 6 1 169 32 58 22 12 9 34 0 2 53 0 1 103 20 17 40 0 1 196 0 11 231 2 3 49 3 0 61 0 5 46 0 2 238 chain 210521 chr1 248956422 + 76456551 76458893 L1PA3long 6157 + 3843 6156 9338 915 31 1 1255 0 1 141 chain 300339 chr1 248956422 + 76536667 76540466 L1PA8A 6298 + 2501 6291 6817 90 0 5 123 1 0 333 0 14 225 0 6 74 0 1 46 11 15 34 55 1 237 7 6 160 0 1 605 0 2 45 0 1 203 8 9 231 0 1 500 0 4 16 0 4 76 1 3 675 1 2 42 chain 67736 chr1 248956422 + 76664760 76665523 L1PA4 6152 + 5385 6152 24512 392 1 0 364 0 5 6 chain 8005 chr1 248956422 + 76698866 76701198 L1MA8 2339 + 1954 2333 74872 55 1 0 30 2054 134 23 2 0 9 9 0 21 13 11 17 65 46 33 chain 6470 chr1 248956422 + 76728114 76728229 MER5A 189 + 24 142 79445 51 28 29 25 0 2 11 chain 90516 chr1 248956422 + 76738636 76739653 L1P1 4361 + 2540 3558 19591 706 6 7 305 chain 87825 chr1 248956422 + 76796136 76797107 L1PA3long 6157 + 5180 6157 20079 223 0 6 407 0 1 81 1 0 259 chain 5943 chr1 248956422 + 76839904 76840008 LTR40b 463 + 338 444 81309 6 0 1 62 21 22 15 chain 192550 chr1 248956422 + 76913716 76915852 L1PA3long 6157 + 4018 6156 9994 339 0 4 196 1 0 833 1 0 766 chain 17815 chr1 248956422 + 76951373 76951626 L1PA7 6471 + 6209 6460 58870 98 27 16 101 0 9 27 chain 135770 chr1 248956422 + 76969050 76970750 L1PA6 6164 + 0 1691 13459 116 0 1 112 11 3 274 0 1 385 3 12 58 10 0 124 1 0 360 1 0 245 chain 514442 chr1 248956422 + 76981021 76987174 L1PA6 6164 + 0 6161 2548 161 0 1 75 0 2 279 0 2 47 1 0 77 0 1 895 13 14 173 3 4 145 0 1 452 1 0 268 1 4 514 0 1 4 1 0 69 0 1 95 3 0 668 5 6 309 0 1 54 0 1 29 0 3 255 0 1 31 0 2 23 0 1 463 7 0 211 0 1 169 0 2 317 5 0 144 2 1 184 chain 246269 chr1 248956422 + 77109002 77111768 L1PA5 6144 + 3374 6144 8320 602 1 0 282 0 1 335 0 1 702 0 4 730 1 0 113 chain 2820 chr1 248956422 + 77129739 77129769 MER58D 378 + 337 367 101526 30 chain 115132 chr1 248956422 + 77158394 77159973 THE1B-int 1605 + 0 1597 16369 164 10 34 41 2 3 182 1 0 4 38 22 112 0 1 107 6 8 25 0 1 252 2 3 277 6 8 55 3 0 19 3 8 176 0 1 94 chain 22287 chr1 248956422 + 77172109 77172465 MER57A1 433 + 0 359 53427 17 0 1 225 20 0 17 2 23 11 28 29 36 chain 164806 chr1 248956422 + 77176406 77179318 MER57-int 2662 + 102 2659 11427 5 0 1 46 0 1 33 0 5 17 0 7 47 0 2 45 2 0 55 0 1 36 1 193 30 4 0 27 2 1 122 3 5 32 0 2 113 15 0 15 1 0 90 1 2 78 519 4 208 0 15 17 18 0 41 2 1 62 1 3 426 0 1 16 4 1 220 6 5 200 2 0 6 1 4 4 1 0 54 36 38 48 0 1 13 22 10 6 2 0 26 2 0 6 1 0 9 4 1 24 1 0 6 16 11 25 3 0 34 chain 39811 chr1 248956422 + 77177226 77177737 MER9a3 513 + 0 513 34814 18 0 2 6 0 1 58 5 4 169 0 17 8 18 0 63 1 2 165 chain 444290 chr1 248956422 + 77182625 77189311 HERVL-int 5654 + 0 5647 4487 78 60 60 196 0 2 35 0 6 213 7 8 270 0 7 63 5 10 158 15 19 61 0 2 476 0 1 206 1 0 412 0 1 404 0 1 1021 1 3 233 0 4 13 0 1 471 1 2 200 0 21 551 1088 3 286 10 8 69 15 2 38 0 3 29 chain 27118 chr1 248956422 + 77189318 77189684 MLT2A1 477 + 0 369 46099 9 0 3 156 5 2 25 11 12 77 0 2 83 chain 74535 chr1 248956422 + 77203652 77204741 MER11B 1079 + 6 1079 22948 348 27 30 25 19 5 10 38 37 76 0 1 4 6 5 65 0 1 61 0 1 66 10 0 25 1 3 51 5 6 41 0 1 16 4 5 162 1 0 28 chain 13576 chr1 248956422 + 77256150 77256346 MER30 238 + 0 198 64203 105 21 23 70 chain 2757 chr1 248956422 + 77337068 77337118 L1MC2 1988 + 1952 1988 101918 29 14 0 7 chain 4957 chr1 248956422 + 77420325 77420384 U7 62 + 1 60 85849 59 chain 59387 chr1 248956422 + 77448921 77449648 THE1B-int 1605 + 869 1596 26543 87 1 2 212 2 0 8 0 1 417 chain 2788 chr1 248956422 + 77482823 77482855 MER58B 340 + 292 324 101717 32 chain 58311 chr1 248956422 + 77496667 77497517 LTR12 884 + 0 876 26863 143 0 41 24 0 42 21 0 42 27 11 12 25 2 0 154 3 0 38 94 0 140 1 0 167 chain 7134 chr1 248956422 + 77497124 77497209 LTR12 884 + 587 672 65212 85 chain 17730 chr1 248956422 + 77658972 77659172 AluSp 311 + 36 236 58976 200 chain 3051 chr1 248956422 + 77670831 77670877 MER65A 464 + 124 192 99285 30 1 23 15 chain 39804 chr1 248956422 + 77691418 77691937 L1PB2 3958 + 3270 3775 34821 38 2 0 55 1 0 8 3 0 68 2 0 12 4 0 94 1 0 72 1 0 64 1 0 49 0 3 20 2 0 22 chain 3653 chr1 248956422 + 77735154 77735220 MADE2 80 + 0 80 93984 20 11 25 35 chain 113681 chr1 248956422 + 77745607 77746897 L1P1 4361 + 2707 4000 16592 780 0 4 185 1 0 324 chain 13202 chr1 248956422 + 77767557 77768060 MER30B 195 + 10 195 64776 65 323 5 115 chain 6725 chr1 248956422 + 77779897 77779978 5S 121 + 0 81 78558 81 chain 14079 chr1 248956422 + 77803673 77803990 L1MA3 4352 + 3997 4277 63485 93 69 44 36 7 8 11 1 2 4 1 0 40 4 0 10 8 1 12 2 0 19 chain 20170 chr1 248956422 + 77840539 77840793 AluSp 311 + 15 263 56170 25 7 1 222 chain 257626 chr1 248956422 + 77896779 77899662 L1PA4 6152 + 3257 6151 8040 295 0 1 1751 0 4 682 15 8 8 0 7 104 0 6 28 chain 10648 chr1 248956422 + 77911608 77911786 Tigger4b 360 + 140 303 69130 16 0 1 107 35 19 20 chain 25227 chr1 248956422 + 77932883 77933190 AluSp 311 + 0 309 48905 10 0 1 55 0 3 231 2 0 9 chain 8908 chr1 248956422 + 78029974 78030076 LTR12_ 688 + 259 361 72769 102 chain 3719 chr1 248956422 + 78053375 78053520 MER90a 614 + 432 603 93477 37 88 114 20 chain 44012 chr1 248956422 + 78087068 78087833 L1PA14 3548 + 2751 3465 32120 187 37 27 36 2 0 4 2 0 35 0 1 69 2 0 4 2 0 17 2 0 6 1 0 21 0 2 33 24 1 27 1 0 9 0 1 18 5 10 68 19 14 30 0 1 5 8 6 9 1 0 6 1 0 19 1 0 38 6 0 10 chain 35419 chr1 248956422 + 78109774 78110181 L1PA4 6152 + 5728 6137 37767 275 0 1 34 0 1 98 chain 95450 chr1 248956422 + 78148169 78149517 L1PB1 5432 + 4092 5420 18850 117 1 0 92 0 7 301 8 13 186 1 0 4 4 3 195 2 0 5 0 2 29 0 1 5 1 0 51 1 2 9 3 0 24 1 0 8 1 0 12 4 0 9 2 0 53 2 1 10 7 6 44 1 0 15 4 0 7 14 6 18 8 5 14 2 0 22 3 2 21 1 4 7 1 0 18 chain 450886 chr1 248956422 + 78158706 78164096 L1PA6 6164 + 0 6162 4373 217 1 0 33 1 0 269 0 2 7 1 0 39 1 0 36 0 2 70 0 2 110 0 17 99 0 4 412 1 2 200 0 13 208 0 4 574 14 7 38 1 0 34 0 4 365 0 1 42 0 718 947 0 11 10 0 2 159 0 1 285 1 0 316 0 1 31 5 5 21 1 5 692 0 1 133 3 0 13 chain 6255 chr1 248956422 + 78198909 78198987 LTR6B 557 + 0 77 80157 50 1 0 27 chain 44146 chr1 248956422 + 78200067 78200628 LTR6B 557 + 0 557 32049 50 1 0 309 0 1 35 6 0 84 21 23 55 chain 519838 chr1 248956422 + 78203108 78209571 L1PA7 6471 + 1 6465 2284 223 38 39 11 0 1 117 1 0 81 1 0 436 7 12 69 1 0 234 0 3 41 3 4 67 6 11 29 3 4 669 7 11 578 39 5 830 18 17 84 0 2 289 0 1 367 2 1 429 0 8 70 5 6 40 2 0 18 5 9 266 0 1 334 6 7 196 1 0 66 11 13 142 2 3 291 1 2 327 chain 37611 chr1 248956422 + 78215101 78215582 LTR10F 562 + 0 562 36329 121 1 2 11 1 85 11 4 1 211 1 0 120 chain 205188 chr1 248956422 + 78215582 78218255 L1PBa1 4058 + 1387 4040 9528 53 10 8 8 0 2 187 3 7 6 0 4 628 0 1 130 8 6 39 1 0 136 0 4 149 0 1 34 13 7 97 0 1 540 1 0 115 10 15 30 2 1 69 1 0 7 1 0 29 1 0 41 2 0 108 3 1 22 1 0 7 6 0 15 2 0 19 2 1 4 1 0 3 3 0 22 1 0 9 2 1 9 2 0 5 1 0 6 11 9 15 1 0 42 chain 46756 chr1 248956422 + 78238886 78239507 L1PA8 5853 + 5240 5853 30746 324 1 0 45 2 0 69 12 10 52 3 1 19 1 0 93 chain 13891 chr1 248956422 + 78239840 78240008 L1PA16 3655 + 3335 3504 63750 12 1 0 134 0 2 21 chain 25724 chr1 248956422 + 78245811 78246083 L1HS 6032 + 3515 3787 48132 272 chain 293937 chr1 248956422 + 78257913 78261803 L1PA10 4194 + 241 4137 7013 9 1 0 21 2 0 15 1 0 8 46 20 21 2 0 21 9 7 11 1 0 6 1 0 14 5 0 9 1 0 82 7 5 61 0 1 188 0 9 538 0 5 320 0 1 606 0 7 12 0 10 119 0 3 264 13 20 20 1 5 59 0 1 130 1 2 183 0 3 5 15 12 177 21 22 339 0 1 140 0 1 352 12 10 21 chain 24103 chr1 248956422 + 78264357 78264846 L1PA13 3608 + 138 596 50642 26 2 1 12 3 0 24 66 56 31 1 0 3 1 0 127 1 0 9 5 4 14 2 0 16 12 8 13 1 0 18 3 1 10 1 0 5 6 2 5 0 2 7 1 0 64 chain 127606 chr1 248956422 + 78293720 78295314 THE1A-int 1579 + 0 1579 14341 145 0 1 156 0 1 438 0 1 350 24 6 276 1 0 137 1 2 66 chain 24108 chr1 248956422 + 78295314 78295642 THE1A 353 + 0 333 50633 17 6 12 81 1 0 94 4 7 5 3 0 117 chain 509744 chr1 248956422 + 78310060 78316155 L1PA6 6164 + 0 6162 2780 141 0 12 41 1 2 192 24 24 88 11 10 428 1 26 290 0 1 319 2 1 298 0 1 138 0 5 202 1 0 114 0 1 31 6 5 820 1 2 108 0 1 229 1 0 108 7 8 251 0 18 990 0 1 84 22 5 1037 1 22 108 chain 3828 chr1 248956422 + 78329877 78329922 MER4E1 777 + 716 761 92662 45 chain 106361 chr1 248956422 + 78336025 78337295 L1PA7 6471 + 5181 6457 17511 298 0 1 122 9 12 73 11 13 757 chain 98125 chr1 248956422 + 78344182 78345304 L1P1 4361 + 3177 4298 18516 973 1 0 148 chain 6502 chr1 248956422 + 78362436 78362525 MLT1C 463 + 63 146 79337 61 6 0 22 chain 12370 chr1 248956422 + 78378309 78378517 L1PA8 5853 + 5647 5853 66195 31 27 27 34 3 2 16 5 4 92 chain 10449 chr1 248956422 + 78388858 78388974 L1PA3long 6157 + 6041 6157 69523 116 chain 34200 chr1 248956422 + 78388979 78389361 L1PA5 6144 + 5761 6142 38565 52 1 0 329 chain 15649 chr1 248956422 + 78475532 78475724 L1PA7 6471 + 6266 6458 61468 192 chain 123408 chr1 248956422 + 78479562 78480951 L1PA4 6152 + 4744 6146 14959 296 0 12 267 7 8 819 chain 444568 chr1 248956422 + 78483658 78489752 L1PA8A 6298 + 28 6229 4481 6 6 0 6 1 0 16 1 0 11 25 14 22 3 0 16 21 12 16 13 11 11 2 1 7 1 0 12 2 0 13 8 6 12 46 37 9 2 0 26 17 16 23 8 0 77 2 0 14 1 0 10 1 0 3 1 0 171 0 1 83 7 9 109 4 0 299 0 7 152 0 3 93 3 0 115 0 4 736 0 1 98 0 1 183 2 3 69 0 2 125 0 2 44 1 53 461 1 0 94 0 2 5 1 2 28 0 1 7 2 4 73 0 1 198 42 12 12 1 0 173 0 1 503 0 1 132 14 14 42 3 26 561 1 0 140 38 14 107 124 251 485 2 0 5 0 2 74 chain 6187 chr1 248956422 + 78489062 78489142 L1PA7 6471 + 6348 6461 78549 23 0 13 26 0 20 31 chain 8191 chr1 248956422 + 78518021 78518126 L1PA8 5853 + 5749 5853 74429 11 4 3 90 chain 16145 chr1 248956422 + 78529737 78530047 MER1B 344 + 0 344 60819 23 72 90 61 1 4 85 11 24 57 chain 26069 chr1 248956422 + 78542713 78543065 THE1B 368 + 0 368 47628 44 0 15 110 11 10 18 1 3 168 chain 191916 chr1 248956422 + 78562889 78565030 L1PA4 6152 + 3686 5836 10026 5 3 0 249 0 1 410 0 4 997 0 5 130 0 1 46 0 1 301 chain 7946 chr1 248956422 + 78567969 78568323 MLT1C 463 + 54 439 75008 25 233 264 30 1 0 37 0 1 28 chain 3773 chr1 248956422 + 78594821 78594882 MER51A 677 + 181 232 93046 18 10 0 33 chain 487406 chr1 248956422 + 78607700 78613724 L1PA6 6164 + 2 6161 3481 193 0 1 4 1 0 60 3 4 131 19 18 25 14 11 30 5 13 77 1 0 225 1 18 94 0 4 158 1 0 4 0 1 171 0 110 176 4 3 530 8 3 263 1 0 101 0 1 167 0 1 177 0 1 412 2 3 1172 0 8 68 0 2 201 3 0 30 9 4 127 13 12 221 15 16 65 0 1 154 1 0 39 1 0 430 2 0 366 1 5 48 chain 28556 chr1 248956422 + 78680801 78681155 L1PA6 6164 + 5807 6160 44021 346 1 0 7 chain 26176 chr1 248956422 + 78738302 78738669 THE1B 368 + 3 368 47464 105 12 13 48 7 8 15 4 0 176 chain 118901 chr1 248956422 + 78738670 78740561 THE1B-int 1605 + 1 1605 15725 14 0 2 282 0 6 4 5 0 53 311 0 68 1 26 640 35 31 51 7 0 6 0 7 414 chain 20380 chr1 248956422 + 78753496 78753853 THE1B 368 + 2 368 55913 39 0 1 21 17 19 87 1 0 6 0 1 9 1 0 4 6 11 13 40 42 113 chain 3422 chr1 248956422 + 78769418 78769489 LTR37A 408 + 262 331 95891 39 18 16 14 chain 16784 chr1 248956422 + 78771597 78771801 L1PB1 5432 + 4843 5047 60047 204 chain 4308 chr1 248956422 + 78801779 78801826 L1P1 4361 + 2307 2354 89452 47 chain 80253 chr1 248956422 + 78810207 78811149 L1PA4 6152 + 5212 6152 21579 92 9 0 658 1 0 4 0 1 34 1 2 110 0 1 27 0 5 6 chain 2862 chr1 248956422 + 78845342 78845408 MLT1D 503 + 42 111 101135 11 1 2 28 13 15 13 chain 27046 chr1 248956422 + 78872186 78872609 LTR7B 505 + 0 495 46205 108 0 10 66 35 11 27 2 90 53 2 1 75 14 13 41 chain 28771 chr1 248956422 + 78880488 78880908 LTR7B 505 + 0 498 43670 96 4 19 69 3 66 6 1 0 14 8 10 26 4 5 51 1 0 77 4 3 56 chain 11406 chr1 248956422 + 78881953 78882083 L1PA7 6471 + 6316 6446 67905 130 chain 9773 chr1 248956422 + 78912646 78912771 MER49 923 + 173 298 70874 18 1 0 84 0 1 22 chain 351784 chr1 248956422 + 78931038 78935496 L1PA8A 6298 + 1778 6272 5894 90 1 4 348 0 1 288 0 1 10 1 0 138 0 3 291 0 1 16 0 4 179 0 1 219 8 1 21 3 5 19 0 4 53 0 1 254 5 1 105 1 0 37 1 2 899 0 1 6 0 5 16 3 4 19 2 1 150 0 22 491 3 1 80 2 3 194 0 2 28 8 6 5 1 0 5 0 1 207 0 1 20 1 0 45 2 3 123 1 0 59 chain 176232 chr1 248956422 + 78968765 78971277 MER61-int 3695 + 1180 3682 10769 13 10 11 140 1 0 53 0 4 176 17 15 200 13 24 95 0 1 115 19 22 72 3 0 12 13 0 69 0 16 183 0 3 5 3 0 16 1 0 185 4 0 134 9 11 10 17 13 85 1 0 33 0 1 4 8 6 164 0 1 4 1 0 76 8 5 362 8 0 53 11 10 9 1 0 7 0 1 45 6 0 38 chain 3778 chr1 248956422 + 79024145 79024195 MER21A 919 + 862 910 93007 43 2 0 5 chain 3709 chr1 248956422 + 79135142 79135186 MADE1 96 + 0 44 93546 44 chain 58515 chr1 248956422 + 79137801 79138800 MER11B 1079 + 0 1079 26812 22 0 1 24 5 99 311 18 17 22 36 25 17 6 8 116 11 11 21 4 11 16 1 0 17 14 4 16 39 43 16 8 9 53 0 1 137 13 7 26 1 0 29 chain 158445 chr1 248956422 + 79168701 79170444 L1PA4 6152 + 3779 5522 11844 1743 chain 77320 chr1 248956422 + 79230260 79231356 MER11A 1151 + 0 1146 22245 79 0 8 143 1 0 64 0 11 11 35 0 10 0 2 354 6 9 11 3 4 38 1 5 67 4 5 13 1 59 90 16 15 87 1 0 61 chain 4364 chr1 248956422 + 79232286 79232336 MER11A 1151 + 244 294 89095 50 chain 2398 chr1 248956422 + 79232336 79232363 MER11A 1151 + 305 332 104166 27 chain 9582 chr1 248956422 + 79255520 79255641 Tigger3a 397 + 216 337 71299 121 chain 68989 chr1 248956422 + 79269498 79270456 LTR12C 1709 + 563 1709 24215 14 4 3 70 0 278 144 0 2 38 1 0 4 5 2 29 0 1 76 0 4 179 102 0 281 0 10 11 chain 19643 chr1 248956422 + 79272603 79272925 THE1B 368 + 0 348 56866 44 0 15 72 4 8 30 1 0 12 1 0 14 38 48 51 1 0 54 chain 511678 chr1 248956422 + 79414188 79420291 L1PA5 6144 + 0 6136 2680 135 7 33 812 0 6 183 9 0 50 1 0 504 0 4 727 0 1 260 5 4 406 0 2 19 0 4 8 1 0 12 1 0 236 5 7 148 1 2 119 1 0 10 0 2 564 0 2 961 10 10 63 1 0 483 2 0 359 chain 26581 chr1 248956422 + 79457101 79457502 MSTA-int 1630 + 1227 1628 46856 161 13 14 102 7 0 12 5 11 27 1 0 4 5 4 50 0 2 14 chain 53113 chr1 248956422 + 79593639 79594480 LTR12 884 + 0 884 28535 56 0 107 41 37 25 33 1 26 31 0 25 32 2 0 201 101 0 66 0 1 65 2 0 89 0 2 84 chain 2013 chr1 248956422 + 79593746 79593773 LTR12 884 + 29 56 68277 27 chain 63752 chr1 248956422 + 79622689 79623587 LTR12 884 + 0 866 25466 276 0 66 14 0 22 247 122 0 117 0 2 122 chain 51375 chr1 248956422 + 79694392 79695030 PABL_A 660 + 14 652 29085 71 6 5 53 1 0 90 1 0 275 0 2 107 0 1 34 chain 78857 chr1 248956422 + 79702340 79703294 LTR5_Hs 974 + 0 974 21907 459 0 4 38 0 1 27 1 13 363 3 6 63 chain 3139 chr1 248956422 + 79749374 79749411 MADE1 96 + 48 85 98475 37 chain 150000 chr1 248956422 + 79868900 79870717 L1PA7 6471 + 2832 4656 12348 110 1 2 880 0 1 9 2 3 31 4 0 500 0 1 174 0 7 24 1 0 4 0 1 77 chain 415234 chr1 248956422 + 79928384 79933739 HERVL-int 5654 + 0 5654 4953 13 0 62 157 9 11 20 0 1 271 0 1 126 0 1 141 1 2 64 0 5 33 0 2 161 16 17 32 0 4 326 6 7 4 1 0 96 0 3 43 11 15 295 33 38 67 1 206 233 0 1 496 12 21 318 0 2 73 9 10 427 0 1 160 0 2 71 0 5 122 0 1 182 5 6 711 7 0 160 24 6 47 0 1 218 6 9 147 chain 57241 chr1 248956422 + 79999288 79999993 L1P1 4361 + 3005 3708 27182 154 1 0 34 1 0 412 0 1 70 1 0 32 chain 206463 chr1 248956422 + 80000001 80002418 L1PA6 6164 + 3736 6156 9488 1654 1 3 113 0 2 333 2 1 314 chain 28557 chr1 248956422 + 80013627 80013924 AluYk12 309 + 0 297 44020 297 chain 7058 chr1 248956422 + 80025643 80025731 MLT2C2 476 + 48 136 77412 88 chain 23693 chr1 248956422 + 80050224 80050574 LTR18A 364 + 7 364 51285 68 0 2 6 2 0 15 17 2 111 5 18 60 0 1 40 5 13 21 chain 94254 chr1 248956422 + 80077372 80078501 L1PA7 6471 + 5340 6470 19005 127 0 8 146 1 0 842 6 0 7 chain 9864 chr1 248956422 + 80116969 80117123 MER57-int 2662 + 877 1031 70694 43 15 16 10 2 1 84 chain 20506 chr1 248956422 + 80145610 80145879 L1PA6 6164 + 5912 6162 55777 64 20 1 185 chain 155011 chr1 248956422 + 80287464 80289251 L1PA5 6144 + 3944 5720 12056 423 2 0 55 0 1 165 0 1 36 1 2 232 0 1 547 16 2 10 0 1 300 chain 348284 chr1 248956422 + 80333828 80338214 L1PA7 6471 + 2154 6458 5930 7 0 8 453 28 10 742 1 2 146 2 1 470 31 18 195 0 1 186 3 6 495 0 4 298 8 5 314 1 2 104 1 0 115 0 1 75 1 3 152 66 0 415 21 21 8 1 0 47 chain 51328 chr1 248956422 + 80344427 80345053 L1PA8A 6298 + 5666 6291 29108 512 7 6 107 chain 7658 chr1 248956422 + 80382511 80382837 MLT1B 390 + 30 350 75729 70 213 207 43 chain 7034 chr1 248956422 + 80393435 80393792 MLT1B 390 + 0 360 77488 23 255 258 79 chain 311870 chr1 248956422 + 80406795 80410255 L1PA3long 6157 + 2706 6157 6574 485 0 4 223 8 0 1966 1 0 101 4 0 672 chain 207125 chr1 248956422 + 80500437 80502825 L1PA5 6144 + 3766 6143 9458 112 0 1 544 0 1 210 0 1 17 1 0 41 0 3 305 14 13 82 15 0 281 0 1 609 0 1 144 3 1 10 chain 10325 chr1 248956422 + 80547370 80547497 AluY 311 + 6 132 69751 117 1 0 9 chain 34552 chr1 248956422 + 80547507 80547942 LTR10C 591 + 137 562 38317 374 10 0 51 chain 15794 chr1 248956422 + 80547971 80548164 MER4E1 777 + 572 769 61292 31 0 4 162 chain 53387 chr1 248956422 + 80583477 80584236 LTR12 884 + 0 727 28436 25 1 0 113 24 8 16 14 0 106 20 20 48 1 2 40 2 0 349 chain 178759 chr1 248956422 + 80597491 80600245 L1PB1 5432 + 2788 5423 10648 28 30 27 43 0 3 118 2 0 3 7 0 300 5 10 165 0 1 215 1 0 4 15 19 211 0 3 201 5 12 225 20 19 115 0 2 114 4 0 51 0 1 267 7 2 57 82 0 89 53 21 24 1 0 8 24 23 50 19 17 45 1 0 15 27 15 15 0 15 5 2 0 24 23 21 13 1 0 14 1 0 5 chain 269963 chr1 248956422 + 80634607 80638316 MER61-int 3695 + 0 3695 7706 30 4 0 16 1 0 226 1 0 109 0 1 28 2 3 124 7 6 100 2 0 198 9 12 212 0 1 65 1 0 120 2 1 72 5 10 69 1 2 65 2 1 24 0 5 10 22 0 109 0 5 550 0 1 5 8 11 193 10 0 162 0 3 45 0 3 9 10 10 120 29 13 19 1 0 95 1 0 137 0 5 9 11 8 55 0 15 60 2 0 9 2 0 40 9 11 142 1 0 116 4 6 219 chain 196718 chr1 248956422 + 80701691 80703889 L1PA3long 6157 + 3948 6157 9822 944 3 15 991 1 0 259 chain 309204 chr1 248956422 + 80732827 80736238 L1PA3long 6157 + 2744 6157 6629 94 0 2 458 2 0 627 0 1 44 0 1 2186 chain 484855 chr1 248956422 + 80783565 80789655 L1PA7 6471 + 321 6461 3535 64 6 6 20 1 2 13 15 16 166 0 1 142 3 0 5 0 3 35 6 2 407 7 11 281 17 21 13 6 41 63 0 1 124 0 1 597 1 3 272 15 1 781 0 2 101 2 7 21 0 4 33 0 1 320 0 1 582 0 1 722 0 1 271 5 6 46 0 1 87 1 4 207 2 1 465 19 18 146 chain 16235 chr1 248956422 + 80858915 80859110 L1PA5 6144 + 5954 6144 60708 80 5 0 110 chain 71931 chr1 248956422 + 80900929 80901876 L1PREC2 3366 + 1439 2382 23564 208 0 3 23 0 1 86 7 1 10 6 5 188 1 0 4 0 1 280 3 0 28 0 1 93 0 1 10 chain 9806 chr1 248956422 + 80925401 80925573 MLT1B 390 + 242 390 70809 12 37 11 62 0 2 61 chain 493712 chr1 248956422 + 80946068 80951543 L1PA3long 6157 + 11 6153 3315 83 0 526 161 0 128 640 0 1 138 0 8 2707 0 2 524 0 1 973 0 1 249 chain 79803 chr1 248956422 + 81014187 81015193 L1PA8 5853 + 3702 4721 21660 46 0 1 142 0 1 63 0 1 36 3 5 62 0 2 125 9 8 340 2 8 15 0 1 163 chain 59571 chr1 248956422 + 81035371 81036070 SVA_B 1603 + 914 1603 26491 62 1 0 14 1 0 499 1 2 15 9 0 97 chain 9459 chr1 248956422 + 81141526 81141651 MER85 139 + 4 139 71591 85 1 11 39 chain 9788 chr1 248956422 + 81211000 81211125 MER85 139 + 4 139 70849 86 1 11 38 chain 67512 chr1 248956422 + 81244366 81245155 L1PA7 6471 + 5678 6470 24562 328 0 1 187 0 1 187 0 1 87 chain 38814 chr1 248956422 + 81245282 81245723 LTR7 482 + 0 472 35492 261 0 31 180 chain 297293 chr1 248956422 + 81245735 81249483 HERVH-int 3825 + 0 3825 6913 172 0 3 183 0 1 43 0 1 129 5 0 38 1 0 9 2 1 24 70 0 14 1 0 13 3 0 6 58 12 7 1 0 64 21 0 7 1 0 51 0 1 307 2 0 140 15 0 459 5 32 584 0 1 818 8 218 487 chain 2304 chr1 248956422 + 81246369 81246411 HERVH-int 3825 + 604 683 98565 14 1 0 13 3 0 8 0 41 3 chain 38521 chr1 248956422 + 81250756 81251207 LTR7 482 + 0 482 35693 242 5 36 204 chain 2561 chr1 248956422 + 81462132 81462200 LTR12 884 + 187 274 103325 21 26 45 21 chain 4949 chr1 248956422 + 81488282 81488416 L1M4c 1769 + 168 248 85897 24 61 7 49 chain 22572 chr1 248956422 + 81520432 81520772 THE1D 372 + 0 344 53015 56 15 6 125 33 39 12 0 6 82 0 1 17 chain 3925 chr1 248956422 + 81527295 81527422 MLT1A0 366 + 23 149 91952 24 68 67 35 chain 41577 chr1 248956422 + 81615102 81615653 LTR12_ 688 + 0 688 33639 53 0 41 45 23 7 44 1 2 156 3 104 213 0 10 13 chain 8340 chr1 248956422 + 81734371 81734579 MLT1C 463 + 216 427 74061 44 92 95 72 chain 8340 chr1 248956422 + 81735128 81735336 MLT1C 463 + 216 427 74060 44 92 95 72 chain 24336 chr1 248956422 + 81786875 81787234 THE1A 353 + 0 353 50270 15 2 0 32 0 1 47 1 0 12 33 27 199 0 2 18 chain 17435 chr1 248956422 + 82034186 82034558 L1PREC2 3366 + 2662 2994 59315 55 1 0 32 5 3 54 1 0 44 7 3 11 32 24 12 29 22 30 3 0 11 22 8 23 chain 16703 chr1 248956422 + 82115821 82116013 L1PA5 6144 + 5943 6135 60147 192 chain 30034 chr1 248956422 + 82143808 82144181 THE1C 375 + 0 373 42020 154 0 1 196 1 0 22 chain 5291 chr1 248956422 + 82150457 82150547 MADE1 96 + 2 96 84240 31 14 17 13 0 1 32 chain 19843 chr1 248956422 + 82157980 82158343 THE1D 372 + 1 372 56617 96 12 11 47 36 39 12 40 45 29 0 1 91 chain 14052 chr1 248956422 + 82182800 82183011 MER30 238 + 0 238 63516 91 5 32 6 3 0 29 1 7 25 3 0 48 chain 557363 chr1 248956422 + 82250044 82256061 L1PA2 6032 + 2 6021 280 5793 0 2 224 chain 107501 chr1 248956422 + 82380167 82381562 L1PA8 5853 + 4463 5853 17387 85 0 1 374 1 3 84 2 0 72 0 1 39 5 6 42 8 7 387 1 0 37 8 7 60 1 0 12 1 0 8 7 0 6 0 6 39 3 2 19 2 1 92 chain 16491 chr1 248956422 + 82390292 82390480 L1PA7 6471 + 5684 5872 60393 188 chain 28566 chr1 248956422 + 82416343 82416663 AluYa5 310 + 0 310 44005 126 7 0 9 3 0 175 chain 78939 chr1 248956422 + 82438597 82439553 L1PA7 6471 + 5508 6464 21888 106 0 3 81 0 2 259 3 1 51 6 0 33 0 6 409 3 0 5 chain 19556 chr1 248956422 + 82527889 82528524 L1PB1 5432 + 4913 5404 56947 190 352 80 11 1 0 26 4 135 15 1 0 21 1 0 13 chain 203388 chr1 248956422 + 82583926 82586206 L1PA4 6152 + 3860 6151 9593 77 0 8 272 4 0 991 0 1 659 9 16 8 1 0 259 chain 27617 chr1 248956422 + 82610249 82610604 THE1A 353 + 0 353 45436 111 1 0 91 2 1 150 chain 43078 chr1 248956422 + 82622427 82622973 MER41A 554 + 0 554 32726 76 0 1 391 0 5 17 1 2 41 1 2 19 chain 24938 chr1 248956422 + 82626992 82627311 MER41A 554 + 0 320 49372 40 6 7 273 chain 11853 chr1 248956422 + 82627363 82627507 MER41A 554 + 410 554 67110 144 chain 140324 chr1 248956422 + 82660285 82661790 L1HS 6032 + 4523 6031 13074 6 0 3 1499 chain 27340 chr1 248956422 + 82955310 82955722 LTR7 482 + 0 482 45778 43 34 72 109 22 54 204 chain 277377 chr1 248956422 + 82955737 82959374 HERVH-int 3825 + 13 3825 7509 314 8 7 53 0 1 114 11 7 26 1 0 6 1 0 5 1 72 13 3 0 8 16 17 41 43 0 18 63 0 42 0 1 21 1 0 64 0 3 224 13 14 346 9 0 40 1 0 215 4 31 229 0 1 31 26 0 97 0 1 995 9 11 39 8 218 72 0 5 133 0 2 132 0 2 141 chain 16115 chr1 248956422 + 83029510 83029694 L1PA7 6471 + 6284 6468 60877 184 chain 24296 chr1 248956422 + 83031033 83031390 THE1B 368 + 0 368 50333 44 5 20 108 10 9 11 2 0 93 9 8 75 chain 123662 chr1 248956422 + 83031390 83032956 THE1B-int 1605 + 0 1605 14906 430 0 25 10 0 2 51 4 5 782 11 21 140 0 1 92 1 0 4 0 1 41 chain 24558 chr1 248956422 + 83032956 83033289 THE1B 368 + 0 344 49928 39 0 15 54 2 3 61 1 0 6 0 1 13 4 0 101 1 0 51 chain 156465 chr1 248956422 + 83036914 83038806 L1PA7 6471 + 4573 6469 11972 89 6 10 73 6 7 545 1 3 410 5 4 744 2 0 11 chain 36066 chr1 248956422 + 83049476 83049909 L1PA6 6164 + 5733 6161 37372 9 0 1 409 6 0 9 chain 29265 chr1 248956422 + 83141341 83141712 THE1C-int 1605 + 1207 1588 42944 260 1 0 87 0 11 23 chain 518987 chr1 248956422 + 83167420 83173308 L1PA4 6152 + 3 5878 2319 439 0 1 133 1 0 260 17 0 50 0 1 35 0 1 2248 1 0 11 0 1 2509 0 2 184 chain 544292 chr1 248956422 + 83182174 83188201 L1PA2 6032 + 2 6032 1068 72 0 1 181 1 0 66 0 6 386 8 1 433 0 1 2669 0 1 380 0 1 1243 0 1 588 chain 72822 chr1 248956422 + 83230404 83231194 L1PA3long 6157 + 5354 6144 23355 790 chain 29177 chr1 248956422 + 83242556 83242869 AluYb8 318 + 0 316 43087 116 0 3 197 chain 542529 chr1 248956422 + 83263607 83269623 L1PA3long 6157 + 1 6152 1171 151 0 1 623 0 128 1805 0 5 1613 0 1 1824 chain 281908 chr1 248956422 + 83301220 83305003 L1PB1 5432 + 1692 5420 7375 560 0 1 234 5 6 30 0 1 318 1 0 358 6 6 59 0 1 263 9 10 194 38 4 249 7 0 212 0 1 262 36 39 108 0 13 482 1 2 9 5 0 24 1 0 9 16 11 11 4 2 48 7 6 12 1 0 42 2 1 16 3 0 17 9 0 14 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 63903 chr1 248956422 + 83341258 83341957 L1PA2 6032 + 3101 3801 25430 443 1 2 255 chain 20350 chr1 248956422 + 83429471 83429767 L1PA8 5853 + 5564 5853 55946 44 2 0 74 10 8 5 1 0 45 2 1 19 2 1 92 chain 19192 chr1 248956422 + 83529761 83530133 L1PA11 4918 + 4231 4578 57360 97 4 0 65 2 1 13 4 2 49 0 1 15 81 65 15 1 0 13 2 0 11 chain 5154 chr1 248956422 + 83573854 83573913 MER101B 537 + 146 205 84892 59 chain 3751 chr1 248956422 + 83607747 83607792 L1MA7 2200 + 1991 2036 93229 45 chain 13907 chr1 248956422 + 83664982 83665212 MER30 238 + 0 237 63726 89 15 29 7 4 0 74 15 12 26 chain 23208 chr1 248956422 + 83669801 83670108 THE1B-int 1605 + 487 1605 52070 59 0 811 248 chain 10291 chr1 248956422 + 83809381 83809518 L1PB2 3958 + 3704 3838 69822 49 2 0 22 1 0 63 chain 141847 chr1 248956422 + 83880679 83882233 L1PA3long 6157 + 4583 6142 12953 87 0 1 639 0 4 828 chain 73813 chr1 248956422 + 83915200 83916017 L1PA4 6152 + 4698 5517 23138 603 0 2 214 chain 50041 chr1 248956422 + 83984100 83984829 L1PA16 3655 + 2922 3619 29551 60 0 2 211 2 1 5 1 0 90 7 0 98 0 1 25 16 17 145 3 0 15 19 0 11 6 1 15 chain 2858 chr1 248956422 + 84012775 84012811 L1MCc 1008 + 286 331 101159 28 0 9 8 chain 31789 chr1 248956422 + 84029299 84029733 MLT2A1 477 + 0 477 40509 121 0 9 39 4 1 9 0 1 23 0 1 181 4 0 8 9 47 14 0 1 22 chain 9497 chr1 248956422 + 84106010 84106179 MER2 342 + 164 329 71480 9 3 0 4 2 0 100 26 27 25 chain 9399 chr1 248956422 + 84110118 84110346 MER2 342 + 5 240 71704 14 1 16 16 89 81 108 chain 18465 chr1 248956422 + 84180070 84180562 L1PB1 5432 + 4990 5424 58139 113 91 64 26 6 0 27 2 1 16 1 0 42 2 1 9 33 20 18 8 5 14 6 4 16 15 14 11 1 0 13 1 0 16 1 0 4 chain 73389 chr1 248956422 + 84287016 84288098 MER11B 1079 + 0 1079 23237 354 27 30 41 12 11 101 0 1 4 6 5 194 10 0 25 1 3 51 5 6 25 18 19 14 4 5 21 7 8 131 2 1 29 chain 3475 chr1 248956422 + 84304382 84304422 MER3 215 - 1 41 95405 40 chain 537882 chr1 248956422 + 84442772 84449240 L1PA7 6471 + 0 6468 1456 320 11 12 72 2 3 614 2 1 371 0 3 705 1 3 83 0 1 288 1 10 154 0 1 131 13 3 89 1 0 237 10 14 543 8 13 1086 1 2 196 3 0 668 5 6 80 0 1 75 35 8 190 0 5 17 0 10 434 1 0 10 2 0 9 chain 23210 chr1 248956422 + 84568619 84569018 MSTA 426 + 0 426 52068 84 49 75 46 2 0 9 30 33 30 1 0 18 0 1 130 chain 318864 chr1 248956422 + 84589629 84594974 L1PA11 4918 + 8 4629 6425 7 1 0 26 3 1 34 6 3 34 1 0 17 2 0 44 5 4 34 2 0 6 2 1 55 0 5 67 6 11 215 0 2 12 0 4 154 1 0 8 1 0 187 0 25 84 0 1 76 0 4 74 1 0 11 0 4 92 0 4 37 1 2 32 5 6 29 9 13 380 0 1 8 21 9 18 1 36 174 317 17 150 4 9 12 7 6 109 1 5 9 7 5 153 9 7 93 9 5 5 0 3 72 0 1 89 470 0 142 0 1 241 4 0 89 1 0 7 0 1 297 2 0 33 6 9 147 1 0 274 1 0 5 0 1 10 11 0 217 1 15 26 13 14 51 7 6 12 2 0 62 0 8 11 1 0 20 4 0 9 32 22 15 1 0 13 2 0 11 47 33 18 chain 49053 chr1 248956422 + 84675397 84676080 MER4A 717 + 0 683 29928 135 7 26 300 6 8 23 17 0 25 14 10 156 chain 11359 chr1 248956422 + 84779612 84779810 MER30 238 + 0 238 67992 15 3 21 47 0 3 23 4 20 30 1 7 17 10 7 48 chain 7965 chr1 248956422 + 84786771 84786954 L1MB5 1630 + 1427 1606 74957 46 14 19 41 34 33 26 7 0 9 1 0 5 chain 6245 chr1 248956422 + 84882758 84882828 L1PA5 6144 + 6074 6144 80189 70 chain 57140 chr1 248956422 + 84902682 84903432 LTR12 884 + 0 869 27212 229 1 109 39 2 0 267 16 25 171 0 4 25 chain 20703 chr1 248956422 + 84905000 84905309 L1PA8 5853 + 5549 5853 55496 15 1 0 45 2 0 69 2 1 15 10 11 33 8 7 15 2 1 92 chain 99398 chr1 248956422 + 84908364 84909570 L1PA8A 6298 + 5087 6291 18364 67 7 0 7 0 7 321 2 1 689 1 0 112 chain 12180 chr1 248956422 + 84916524 84916663 MER85 139 + 0 139 66512 139 chain 10920 chr1 248956422 + 84927007 84927202 L1PA8 5853 + 5656 5853 68666 22 12 10 52 8 9 13 1 0 47 11 15 29 chain 25843 chr1 248956422 + 84954941 84955312 THE1C 375 + 0 375 47948 125 18 15 42 3 4 141 4 11 11 1 0 26 chain 288396 chr1 248956422 + 84977009 84981755 L1MA2 4263 + 26 4218 7184 63 0 6 9 30 29 18 1 0 11 2 0 94 2 1 20 4 6 45 0 8 20 3 0 34 0 3 40 0 1 49 1 0 11 0 2 547 0 1 56 0 4 216 1 0 82 5 10 65 0 4 49 0 14 10 0 1 57 1 4 62 0 12 117 487 5 158 1 5 45 1 0 498 2 1 96 13 14 15 2 0 39 0 5 13 5 0 73 0 1 4 7 9 46 0 2 73 1 4 135 19 7 227 0 5 57 9 21 23 0 2 119 3 15 60 10 3 26 5 0 49 1 0 147 3 0 126 6 5 16 11 9 93 7 0 17 0 3 27 1 0 10 203 73 16 4 2 12 chain 16072 chr1 248956422 + 84987720 84988054 L1PB1 5432 + 5117 5422 60928 17 1 0 8 3 2 12 2 0 3 2 0 9 4 2 50 2 1 17 1 0 43 1 0 21 20 10 14 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 2 1 17 chain 164707 chr1 248956422 + 85009584 85012234 L1PB1 5432 + 3087 5422 11433 15 1 2 268 0 1 5 1 14 269 0 3 63 10 12 223 0 1 347 1 0 125 0 1 192 12 9 160 1 9 60 2 1 31 1 0 4 318 6 186 0 1 8 14 14 21 1 0 6 1 0 12 2 0 3 2 0 9 3 1 44 7 6 11 7 6 60 23 12 18 3 1 5 1 0 14 7 5 10 1 2 7 1 0 22 1 0 12 6 5 13 chain 14567 chr1 248956422 + 85052763 85052993 Tigger3b 1229 + 711 941 62829 47 4 0 7 10 11 27 0 1 9 6 8 120 chain 164952 chr1 248956422 + 85099307 85101132 L1PA4 6152 + 4315 6151 11414 16 0 1 19 0 4 283 0 5 1366 0 1 141 chain 5422 chr1 248956422 + 85102113 85102206 L1MA4 2864 + 2724 2809 83598 13 11 5 25 2 0 42 chain 146281 chr1 248956422 + 85186416 85188021 L1PA3long 6157 + 4547 6157 12593 1460 0 1 94 0 4 51 chain 5567 chr1 248956422 + 85293388 85293464 MER33 330 + 217 291 82954 40 2 0 34 chain 20418 chr1 248956422 + 85334009 85334370 THE1D 372 + 18 372 55864 38 63 55 73 14 16 27 1 0 145 chain 90783 chr1 248956422 + 85346766 85347775 L1PA5 6144 + 5134 6144 19539 855 0 1 154 chain 5956 chr1 248956422 + 85351844 85351953 L1MB3 1562 + 1444 1555 81251 55 25 27 29 chain 25969 chr1 248956422 + 85373328 85373729 THE1D 372 + 0 372 47763 52 15 8 16 15 0 8 4 0 117 9 7 132 1 0 32 chain 15460 chr1 248956422 + 85448032 85448249 MER30 238 + 0 237 61712 107 4 23 22 1 5 33 3 0 47 chain 19913 chr1 248956422 + 85456368 85456613 MER47A 366 + 0 245 56502 245 chain 524521 chr1 248956422 + 85508351 85514535 L1PA6 6164 + 2 6162 2069 115 1 0 401 0 2 47 1 0 483 0 8 614 12 2 68 2 0 5 0 2 584 0 1 793 0 1 61 0 1 97 0 1 2027 1 0 462 31 0 231 12 16 127 0 2 9 chain 3868 chr1 248956422 + 85537404 85537467 L1MA6 2487 + 2343 2402 92364 36 4 1 18 1 0 4 chain 87147 chr1 248956422 + 85589653 85591221 L1M1 2793 + 775 1989 20202 27 2 1 28 2 0 8 1 0 53 6 4 5 1 0 102 1 0 36 0 10 131 1 0 49 357 3 19 17 7 107 1 2 111 1 4 246 0 4 37 0 1 219 chain 22873 chr1 248956422 + 85590110 85590459 THE1B 368 + 0 368 52545 13 2 0 27 0 5 57 0 1 36 0 4 29 2 1 25 35 45 14 0 2 109 chain 9041 chr1 248956422 + 85592587 85592742 L1MA2 4263 + 3967 4112 72470 61 9 7 23 15 8 39 1 0 7 chain 17280 chr1 248956422 + 85600917 85601246 MER2 342 + 0 322 59482 47 44 40 29 1 3 65 1 0 93 12 7 11 5 6 21 chain 557360 chr1 248956422 + 85641866 85648021 L1PA3long 6157 + 4 6157 281 427 0 1 9 0 4 704 0 2 3009 11 1 6 0 1 1989 chain 565996 chr1 248956422 + 85748519 85754548 L1HS 6032 + 0 6030 65 2976 0 1 3053 chain 94869 chr1 248956422 + 85863413 85864550 L1PA5 6144 + 4995 6139 18925 328 0 4 159 13 10 123 11 12 340 0 7 11 0 1 141 3 0 8 chain 395955 chr1 248956422 + 85869324 85873838 L1PA5 6144 + 1606 6143 5214 739 0 1 1123 0 1 136 0 1 435 1 0 307 0 4 407 0 7 530 1 5 193 3 0 476 0 7 16 0 1 131 4 5 12 chain 6184 chr1 248956422 + 85901852 85901978 L1MA4A 3247 + 3050 3172 80411 63 39 35 24 chain 461277 chr1 248956422 + 85921432 85926818 L1PA6 6164 + 736 6156 4100 71 0 17 100 0 4 140 0 5 762 1 0 149 1 4 49 1 0 284 5 4 858 1 2 4 0 1 873 1 0 1341 1 0 319 0 7 104 0 1 321 chain 563705 chr1 248956422 + 85927067 85933100 L1HS 6032 + 0 6032 118 257 1 0 5775 chain 9946 chr1 248956422 + 85948696 85948810 L1PREC2 3366 + 1697 1811 70540 114 chain 31385 chr1 248956422 + 85956949 85957356 L1PA8 5853 + 5427 5853 40822 111 0 25 45 2 0 71 1 0 14 1 0 47 2 1 19 1 0 93 chain 31615 chr1 248956422 + 85967832 85968262 MLT2A1 477 + 3 477 40650 139 0 1 25 1 5 80 20 19 113 3 43 49 chain 49486 chr1 248956422 + 86071003 86071818 L1MA2 4263 + 26 849 29771 26 0 3 20 46 48 38 5 0 4 1 0 86 2 0 41 20 19 18 16 15 140 1 0 24 0 1 29 1 5 130 16 19 50 3 10 85 1 0 12 chain 506485 chr1 248956422 + 86071820 86077992 L1PA7 6471 + 108 6466 2914 294 1 3 293 14 33 93 0 7 356 0 10 200 0 3 261 0 1 26 5 7 199 0 3 393 5 13 323 0 1 11 4 7 32 0 2 64 0 1 371 0 56 121 9 10 37 5 15 172 5 4 298 2 1 847 0 4 237 1 0 74 8 9 82 0 48 353 0 1 137 1 0 95 1 6 590 1 2 9 0 1 56 0 3 76 3 0 7 chain 12820 chr1 248956422 + 86111251 86111520 LTR12C 1709 + 650 877 65416 62 41 0 14 6 47 29 41 0 35 1 0 40 chain 2631 chr1 248956422 + 86111320 86111354 LTR12C 1709 + 837 871 93503 34 chain 36209 chr1 248956422 + 86119848 86120254 L1PA6 6164 + 4710 5116 37265 406 chain 90590 chr1 248956422 + 86120254 86121298 L1PA6 6164 + 5117 6162 19580 758 0 1 286 chain 25273 chr1 248956422 + 86138392 86138730 THE1B 368 + 0 360 48832 44 0 15 40 1 9 60 5 4 188 chain 3362 chr1 248956422 + 86211329 86211366 MLT1A1 405 + 357 394 96469 37 chain 167440 chr1 248956422 + 86215139 86217337 SVA_F 1814 + 9 1814 11247 872 1 0 33 49 0 34 0 15 4 177 0 246 181 0 601 chain 2678 chr1 248956422 + 86216047 86216078 SVA_F 1814 + 1107 1138 62228 20 0 1 4 1 0 6 chain 13892 chr1 248956422 + 86216132 86216309 SVA_F 1814 + 1016 1143 42213 75 50 0 52 chain 15505 chr1 248956422 + 86216555 86216736 SVA_F 1814 + 988 1164 51929 12 2 0 11 1 0 117 1 0 10 1 0 26 chain 252890 chr1 248956422 + 86242534 86245288 L1PA2 6032 + 3271 6026 8159 1058 1 0 183 0 1 1361 0 1 151 chain 66154 chr1 248956422 + 86275299 86276007 L1HS 6032 + 5323 6032 24920 4 0 1 704 chain 416217 chr1 248956422 + 86330250 86334976 L1PA5 6144 + 1409 6142 4938 900 7 0 235 7 22 628 3 4 1422 0 1 849 0 2 358 4 0 167 1 0 145 chain 192101 chr1 248956422 + 86340136 86343486 HERVH48-int 3304 + 136 3245 10021 6 2 0 13 3 0 6 5 2 8 2 0 6 14 10 13 2 0 26 1 0 31 55 35 4 1 0 66 6 2 5 1 0 72 1 0 13 6 0 9 14 8 79 1 0 9 3 1 54 60 32 17 1 0 5 2 0 57 11 9 39 1 0 34 1 0 69 25 17 118 3 0 11 1 0 20 1 0 14 2 0 32 3 0 3 2 0 17 5 3 6 1 0 15 1 0 23 2 0 40 24 15 121 2 1 11 1 0 6 1 0 218 5 4 72 1 4 12 1 0 118 0 6 147 4 0 231 0 3 30 1 0 18 2 0 8 0 4 58 1 0 12 1 0 47 1 0 130 10 11 88 1 0 4 20 18 44 1 0 4 1 0 10 4 2 6 3 0 24 2 0 19 1 0 5 3 0 11 2 0 5 127 93 22 39 32 12 13 5 9 1 0 10 1 3 9 2 0 6 1 0 46 5 2 68 60 44 69 91 65 28 chain 6367 chr1 248956422 + 86372679 86372763 L1PB2 3958 + 3753 3836 79783 22 2 1 60 chain 228655 chr1 248956422 + 86389324 86392809 L1PB1 5432 + 2248 5427 8785 76 0 1 5 1 0 158 2 0 63 13 10 16 0 5 86 0 1 66 0 4 102 4 1 212 303 3 20 13 18 506 0 4 6 0 2 118 11 1 102 0 1 183 10 23 305 23 0 259 0 4 18 0 3 75 0 2 98 0 5 226 17 54 13 32 15 20 1 0 5 24 19 6 2 0 52 18 16 41 5 4 10 19 6 28 10 6 15 4 3 21 1 0 21 1 0 13 1 0 18 2 0 5 chain 27531 chr1 248956422 + 86414606 86414979 MLT2A1 477 + 0 403 45549 142 0 1 26 0 4 35 5 4 124 7 33 34 chain 3218 chr1 248956422 + 86435795 86435854 MER63D 473 + 148 206 97738 29 12 11 18 chain 7323 chr1 248956422 + 86435963 86436152 MER58B 340 + 137 324 76591 30 70 69 36 5 4 48 chain 3156 chr1 248956422 + 86459782 86459815 MER20 218 + 127 160 98304 33 chain 15806 chr1 248956422 + 86467516 86467695 L1P1 4361 + 4150 4328 61280 155 1 0 23 chain 213641 chr1 248956422 + 86511906 86514519 HERVL-int 5654 + 3028 5646 9216 52 0 3 147 0 9 231 2 1 885 21 0 64 0 1 38 0 1 442 0 4 225 0 1 94 8 9 70 0 3 6 4 1 183 0 6 27 0 1 114 chain 31910 chr1 248956422 + 86514519 86514952 MLT2A1 477 + 3 477 40404 165 5 2 9 0 1 26 0 1 162 19 61 47 chain 125770 chr1 248956422 + 86544320 86545934 L1PB1 5432 + 3305 4929 14590 5 0 1 167 1 5 234 0 1 10 2 4 72 1 2 123 0 1 31 0 1 242 0 2 422 3 0 301 chain 5862 chr1 248956422 + 86606272 86606351 MADE1 96 + 1 96 81638 43 1 17 35 chain 57341 chr1 248956422 + 86621604 86622303 LTR30 714 + 0 704 27146 68 0 1 159 6 0 10 1 7 8 0 5 433 1 0 13 chain 75951 chr1 248956422 + 86623678 86624670 L1PB 1623 + 531 1524 22594 267 0 1 215 5 18 273 3 0 48 0 1 92 1 0 7 2 1 30 1 0 4 3 0 13 9 5 7 1 0 11 chain 512628 chr1 248956422 + 86657446 86663606 L1PA6 6164 + 0 6162 2637 46 20 21 72 3 0 320 7 6 56 15 14 252 0 17 17 17 0 167 0 1 463 1 0 162 1 0 344 1 0 59 3 6 309 1 2 31 0 1 824 0 1 115 2 1 1630 1 2 257 0 1 488 1 5 313 2 1 92 2 0 66 chain 9953 chr1 248956422 + 86667194 86667326 L1M1 2793 + 2466 2601 70520 13 0 3 20 0 1 4 1 0 94 chain 172672 chr1 248956422 + 86672111 86674025 L1PA3long 6157 + 4233 6155 10967 778 0 5 156 1 0 135 1 5 843 chain 2918 chr1 248956422 + 86676146 86676303 MLT1F 544 + 381 537 100686 27 110 109 20 chain 21536 chr1 248956422 + 86797029 86797293 AluSq10 312 + 25 288 54454 108 2 1 154 chain 48857 chr1 248956422 + 86806931 86807558 LTR12D 1347 + 440 1343 29991 62 8 174 12 0 18 13 5 0 267 0 97 260 chain 14773 chr1 248956422 + 86807623 86807801 HERV9-int 5642 + 0 178 62564 178 chain 305657 chr1 248956422 + 86813792 86817274 L1P1 4361 + 2 3501 6705 293 0 1 35 8 5 228 0 1 41 0 4 159 0 15 240 1 0 2477 chain 182615 chr1 248956422 + 86817814 86819850 L1PA4 6152 + 3477 5519 10463 39 1 7 1996 chain 5985 chr1 248956422 + 86847871 86847964 MLT1B 390 + 9 92 81144 14 11 0 9 0 1 59 chain 4824 chr1 248956422 + 86865143 86865201 L1MC2 1988 + 916 974 86573 58 chain 8575 chr1 248956422 + 86988242 86988342 HERVK11-int 2540 + 2135 2235 73506 100 chain 4777 chr1 248956422 + 86998864 86998986 MER5A1 166 + 41 161 86818 33 35 30 14 6 9 34 chain 11301 chr1 248956422 + 87405654 87405937 THE1B 368 + 70 368 68081 35 130 145 118 chain 44327 chr1 248956422 + 87430889 87431457 LTR12_ 688 + 13 688 31933 12 1 0 117 1 2 210 0 103 154 0 4 73 chain 9889 chr1 248956422 + 87446035 87446187 MLT1B 390 + 230 379 70643 41 16 17 60 4 0 31 chain 3209 chr1 248956422 + 87468562 87468600 MER2B 336 + 245 283 97807 38 chain 6743 chr1 248956422 + 87480345 87480435 LTR40a 516 + 5 94 78502 63 1 0 26 chain 32322 chr1 248956422 + 87531071 87531501 MER1A 529 + 99 528 40099 355 19 18 56 chain 64697 chr1 248956422 + 87668404 87669158 L1PA5 6144 + 5374 6131 25266 178 2 0 288 8 13 278 chain 4883 chr1 248956422 + 87693438 87693506 MER41A 554 + 397 466 86244 33 1 2 34 chain 29490 chr1 248956422 + 87705319 87705841 MER1A 529 + 0 529 42621 17 6 25 38 14 17 97 1 13 8 12 0 155 18 0 52 50 53 54 chain 22965 chr1 248956422 + 87732697 87733052 THE1D 372 + 0 357 52418 135 6 10 29 1 0 19 1 0 30 10 5 10 13 19 83 1 0 17 chain 4498 chr1 248956422 + 87823188 87823315 MER53 195 + 39 168 88337 28 57 59 42 chain 67252 chr1 248956422 + 87838095 87838835 L1PA4 6152 + 5412 6152 24636 740 chain 29457 chr1 248956422 + 87846754 87847167 MLT2A1 477 + 0 407 42659 17 0 4 148 4 1 8 3 1 204 5 2 8 1 0 7 1 0 7 chain 23275 chr1 248956422 + 87994472 87994856 THE1C 375 + 0 373 51966 7 0 1 55 31 23 122 3 0 5 31 30 130 chain 15155 chr1 248956422 + 88038095 88038356 THE1C 375 + 111 375 62089 74 42 47 51 9 11 57 5 1 23 chain 16685 chr1 248956422 + 88039336 88039671 L1PREC2 3366 + 180 521 60169 13 43 39 12 2 1 12 2 0 21 18 17 49 5 24 36 1 0 54 4 1 9 1 0 53 chain 29674 chr1 248956422 + 88068801 88069180 THE1C 375 + 0 375 42403 236 3 0 114 1 0 25 chain 68064 chr1 248956422 + 88153112 88153905 L1PA7 6471 + 5664 6464 24444 10 0 1 414 1 0 4 0 7 364 chain 104536 chr1 248956422 + 88212347 88213483 L1PA3long 6157 + 5014 6149 17753 293 1 0 842 chain 212271 chr1 248956422 + 88240935 88243918 L1PA7 6471 + 3824 6459 9265 12 1 0 203 8 9 4 1 0 310 0 1 176 2 1 24 350 0 254 0 4 133 4 2 304 0 1 4 1 0 355 1 0 76 0 2 34 0 1 541 50 49 135 chain 10399 chr1 248956422 + 88265603 88265728 L1MA3 4352 + 3960 4086 69620 17 0 1 108 chain 555042 chr1 248956422 + 88341842 88347867 L1PA2 6032 + 3 6027 407 5176 1 0 848 chain 3458 chr1 248956422 + 88365428 88365470 MLT1E2 623 + 580 623 95561 5 0 1 37 chain 115956 chr1 248956422 + 88393083 88394763 L1PB1 5432 + 3795 5424 16243 168 0 7 197 0 4 152 6 7 57 0 3 89 14 19 123 0 1 382 15 16 79 50 11 4 1 0 24 1 0 9 16 11 11 2 0 43 10 9 16 1 0 44 1 0 14 3 0 8 15 5 19 16 13 6 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 4456 chr1 248956422 + 88397206 88397337 MER3 215 - 5 163 88576 38 70 97 23 chain 252458 chr1 248956422 + 88434757 88438595 L1MA1 4479 + 228 4151 8169 15 1 2 4 1 0 31 2 0 79 0 1 153 5 6 53 0 1 109 0 3 58 8 9 17 0 1 38 0 2 38 1 5 121 4 13 110 0 53 82 1 3 67 5 8 220 1 0 154 0 1 97 0 1 20 0 1 94 8 9 104 6 7 4 1 0 68 6 4 52 40 44 266 1 0 62 0 3 81 1 0 65 2 9 18 0 1 20 9 17 39 2 0 33 1 0 68 10 9 49 0 1 27 1 0 19 10 8 158 0 3 9 3 1 15 19 15 65 1 0 12 4 0 125 3 1 115 10 9 59 1 0 89 0 1 4 103 99 59 0 10 10 3 1 14 1 0 62 34 31 102 26 30 23 2 0 35 1 0 9 chain 3586 chr1 248956422 + 88467759 88467803 LTR12C 1709 + 873 917 94541 44 chain 5167 chr1 248956422 + 88467859 88467923 LTR12C 1709 + 654 718 84833 64 chain 1428 chr1 248956422 + 88584671 88584931 L1MA3 4352 + 45 306 43691 111 1 0 19 1 0 7 3 13 38 8 1 72 chain 298177 chr1 248956422 + 88584950 88588775 L1PA8 5853 + 1990 5853 6882 27 6 1 754 13 14 96 1 0 115 2 1 963 5 59 27 7 11 26 19 0 82 1 0 355 5 17 91 0 1 35 0 1 288 1 2 54 2 0 554 2 1 43 2 0 62 10 9 13 1 0 48 2 1 17 13 12 83 chain 1620 chr1 248956422 + 88589614 88589909 L1MA3 4352 + 845 1132 43691 30 1 0 18 6 1 186 2 1 13 2 1 6 0 1 7 1 0 23 chain 3822 chr1 248956422 + 88596386 88596429 MLT2A2 560 + 517 560 92703 43 chain 454412 chr1 248956422 + 88596429 88602327 HERVL-int 5654 + 0 5654 4278 129 0 5 218 8 0 772 3 1 47 303 0 192 16 17 774 4 1 99 0 2 269 0 3 29 0 16 137 2 1 222 1 0 4 5 6 613 0 1 123 4 15 34 7 8 355 0 1 177 5 6 90 0 4 361 0 1 131 0 18 30 7 1 34 4 8 86 12 2 316 0 19 121 0 1 154 chain 15142 chr1 248956422 + 88617127 88617485 L1MB3 1562 + 1225 1555 62109 88 7 8 29 4 3 65 103 76 25 9 8 28 chain 119509 chr1 248956422 + 88620767 88622545 L1PREC2 3366 + 159 2045 15606 11 1 0 9 3 1 20 23 17 15 1 0 15 15 11 8 0 2 18 21 0 59 3 11 49 1 0 31 8 18 14 1 0 79 10 134 229 13 12 14 4 5 130 4 0 151 0 1 40 11 12 22 20 21 180 0 1 142 0 1 403 chain 4075 chr1 248956422 + 88664788 88664843 MADE2 80 + 26 79 90924 28 2 0 25 chain 3530 chr1 248956422 + 88675575 88675619 MLT1J 494 + 101 145 95014 44 chain 13248 chr1 248956422 + 88691721 88691963 MER44A 345 + 1 251 64715 20 1 16 47 5 0 16 1 0 4 14 7 15 0 2 21 0 2 35 5 8 48 1 0 9 chain 5154 chr1 248956422 + 88728681 88728745 L1MC3 1789 + 812 876 84887 48 1 0 4 0 1 11 chain 208582 chr1 248956422 + 88816885 88820142 L1PA7 6471 + 3794 6459 9397 442 405 0 38 0 2 74 0 80 194 0 1 24 1 4 16 6 14 272 319 0 24 0 2 198 1 0 290 0 5 148 0 2 47 0 5 9 0 4 294 4 10 168 0 1 63 8 12 65 0 11 139 1 0 7 chain 3192 chr1 248956422 + 88898139 88898194 MLT2A1 477 + 422 477 97967 8 2 0 7 2 4 36 chain 463894 chr1 248956422 + 88898194 88904109 HERVL-int 5654 + 0 5654 4026 104 0 1 4 1 0 66 0 13 16 1 2 211 302 0 61 0 3 66 0 3 256 5 3 515 1 0 114 1 2 520 3 1 36 1 0 73 0 9 344 3 2 95 0 1 246 0 8 562 0 4 703 0 5 35 1 0 1293 1 0 23 1 2 32 0 1 219 chain 30430 chr1 248956422 + 88904109 88904723 MLT2A1 477 + 0 477 41649 85 0 3 54 0 1 25 5 9 84 0 2 59 2 1 62 197 51 41 chain 41674 chr1 248956422 + 88924528 88925022 LTR17 781 + 255 772 33574 72 0 1 390 1 23 31 chain 379345 chr1 248956422 + 88926932 88931258 HERV17-int 4347 + 12 4347 5496 15 1 0 52 1 0 25 2 3 6 3 0 26 1 0 771 0 3 532 0 9 23 2 0 80 0 1 938 1 2 187 0 1 624 0 1 185 2 1 246 6 7 29 1 0 378 0 1 189 chain 23562 chr1 248956422 + 88931572 88931870 LTR17 781 + 0 306 51486 119 0 9 61 5 4 113 chain 4159 chr1 248956422 + 88955772 88955824 MER5A 189 + 85 136 90398 46 1 0 5 chain 48755 chr1 248956422 + 88974600 88975270 LTR12 884 + 0 869 30029 24 1 0 54 0 66 112 1 0 2 0 25 54 0 1 37 3 1 126 5 4 63 10 114 65 0 8 113 chain 39098 chr1 248956422 + 89004766 89005234 LTR2 463 + 0 463 35288 222 5 0 241 chain 73475 chr1 248956422 + 89018102 89018958 MER11D 897 + 0 897 23227 264 1 18 214 0 1 96 1 24 280 chain 451958 chr1 248956422 + 89072297 89077988 L1PA8 5853 + 111 5847 4338 86 4 0 104 19 7 58 0 16 26 1 9 116 0 1 75 0 1 7 0 4 41 4 1 119 1 4 280 7 9 111 0 2 100 0 11 879 1 25 470 6 0 231 0 1 9 1 0 102 6 1 559 0 13 53 0 1 15 1 2 304 1 0 259 8 4 252 0 1 59 0 1 466 4 1 230 0 1 326 1 0 43 3 1 69 14 11 15 0 1 33 5 4 19 1 0 87 chain 84088 chr1 248956422 + 89079688 89080724 MER11B 1079 + 0 1064 20783 220 0 5 91 1 18 432 5 8 43 8 9 53 0 1 72 0 1 111 chain 27415 chr1 248956422 + 89097674 89098033 THE1B 368 + 0 368 45684 15 2 0 22 0 5 130 2 1 83 0 8 29 1 0 75 chain 24210 chr1 248956422 + 89110314 89110848 L1PB1 5432 + 4942 5430 50480 152 10 12 8 31 0 24 1 0 4 38 31 47 2 1 11 24 18 31 1 0 15 21 13 17 3 1 5 1 0 7 0 18 13 1 0 22 1 0 12 1 0 14 2 0 5 3 0 7 chain 122723 chr1 248956422 + 89139084 89140451 L1PA4 6152 + 4779 6152 15075 519 0 4 523 0 1 71 0 1 254 chain 418256 chr1 248956422 + 89154824 89159739 L1PA5 6144 + 604 5511 4907 384 2 3 178 9 0 668 0 4 468 1 0 4 6 4 324 0 3 514 1 0 199 1 2 55 0 1 87 4 0 172 3 0 245 0 1 156 0 1 551 2 0 29 0 1 327 0 1 301 1 0 59 0 1 164 chain 19588 chr1 248956422 + 89179558 89179875 MER51B 395 + 0 395 56914 28 19 38 25 6 62 56 1 0 4 1 2 30 1 0 88 1 5 57 chain 37261 chr1 248956422 + 89205878 89206294 L1PA4 6152 + 5715 6135 36580 368 0 4 48 chain 274337 chr1 248956422 + 89244954 89248150 L1P2 5180 + 1817 4999 7592 1194 0 1 123 21 0 385 0 2 439 0 1 354 0 1 87 0 2 235 1 0 28 5 6 324 chain 110393 chr1 248956422 + 89283778 89285208 THE1B-int 1605 + 131 1594 17022 189 0 1 32 0 1 7 18 17 52 1 26 678 2 6 424 0 1 11 2 4 14 chain 18801 chr1 248956422 + 89285218 89285470 THE1B 368 + 0 264 57781 23 1 0 16 0 15 85 1 0 22 2 1 102 chain 12488 chr1 248956422 + 89300088 89300240 L1PA8 5853 + 5410 5563 66004 106 1 2 45 chain 3943 chr1 248956422 + 89300241 89300285 L1PA8 5853 + 5563 5607 91809 44 chain 5864 chr1 248956422 + 89300288 89300358 L1PA8 5853 + 5608 5678 81629 70 chain 12755 chr1 248956422 + 89300377 89300544 L1PA8 5853 + 5688 5853 65510 52 2 1 19 2 1 92 chain 527982 chr1 248956422 + 89325168 89331581 L1PA4 6152 + 21 6140 1914 106 0 14 640 1 0 381 0 3 1148 1 0 257 0 1 260 313 0 462 5 3 393 1 0 33 0 1 803 0 1 108 1 0 669 1 5 10 0 1 820 chain 26062 chr1 248956422 + 89335948 89336297 THE1A 353 + 0 353 47640 94 0 4 7 7 6 25 0 1 216 chain 122428 chr1 248956422 + 89336297 89337873 THE1A-int 1579 + 0 1570 15120 224 10 1 48 0 1 215 0 1 7 1 0 158 0 1 675 1 0 26 10 11 10 4 5 18 10 10 159 chain 17129 chr1 248956422 + 89337882 89338094 THE1A 353 + 0 212 59667 212 chain 15433 chr1 248956422 + 89343972 89344291 HUERS-P2-int 2744 + 2446 2742 61745 65 2 0 29 5 0 8 3 0 7 0 2 22 46 41 36 3 0 33 1 0 5 6 4 5 2 0 12 2 0 27 chain 280988 chr1 248956422 + 89345043 89348651 HERVL-int 5654 + 1943 5654 7395 58 4 1 5 0 3 191 1 0 85 0 8 17 8 9 51 0 1 414 7 101 262 0 7 496 0 3 57 24 10 64 0 1 119 11 9 51 0 2 386 6 8 712 1 8 353 8 6 109 4 0 104 chain 63665 chr1 248956422 + 89353251 89353965 L1P1 4361 + 3185 3899 25485 714 chain 234320 chr1 248956422 + 89371198 89373819 L1PA5 6144 + 3519 6138 8630 158 3 0 945 0 1 1515 chain 24247 chr1 248956422 + 89373867 89374233 THE1C 375 + 4 370 50423 100 10 11 61 25 22 104 0 4 44 3 1 19 chain 38219 chr1 248956422 + 89409478 89410084 LTR76 689 + 0 677 35896 21 9 5 10 0 11 93 0 20 71 3 4 154 2 0 8 1 0 54 0 31 67 2 1 32 19 37 18 25 23 17 chain 89341 chr1 248956422 + 89437865 89438984 MER11A 1151 + 0 1151 19791 83 5 0 93 8 0 23 2 0 5 0 1 4 1 0 85 0 2 92 0 1 64 0 1 84 0 1 16 5 4 125 0 1 65 0 9 44 1 0 15 7 41 292 chain 3047 chr1 248956422 + 89490391 89490424 L1M1 2793 + 661 694 99338 33 chain 552657 chr1 248956422 + 89490988 89497133 L1PA3long 6157 + 5 6157 572 1910 0 8 1220 0 1 118 0 1 419 4 1 2474 chain 24532 chr1 248956422 + 89508638 89508899 AluYb8 318 + 51 312 49974 261 chain 103970 chr1 248956422 + 89521049 89522219 L1PA4 6152 + 4624 5817 17824 256 6 4 394 0 4 474 0 21 40 chain 28180 chr1 248956422 + 89522220 89522552 L1PA4 6152 + 5819 6152 44593 324 0 1 8 chain 24204 chr1 248956422 + 89681912 89682187 AluY 311 + 17 293 50492 115 0 1 160 chain 70583 chr1 248956422 + 89704660 89705433 L1PA3long 6157 + 5384 6157 23848 773 chain 3937 chr1 248956422 + 89818373 89818419 MLT1A0 366 + 298 344 91857 46 chain 45849 chr1 248956422 + 89869255 89869829 L1P2 5180 + 1261 1864 31133 111 1 28 380 0 2 82 chain 100499 chr1 248956422 + 89960767 89961858 L1PA3long 6157 + 5057 6147 18235 250 1 0 840 chain 8727 chr1 248956422 + 90051986 90052108 MER75 514 + 383 507 73156 99 7 9 16 chain 30965 chr1 248956422 + 90064275 90064640 L1PA7 6471 + 6101 6466 41155 51 0 1 161 1 0 152 chain 31337 chr1 248956422 + 90077102 90077470 L1PA7 6471 + 6095 6464 40854 124 0 1 244 chain 78868 chr1 248956422 + 90096554 90097438 L1PA4 6152 + 4470 5353 21904 195 1 0 688 chain 19651 chr1 248956422 + 90112566 90112796 L1PA6 6164 + 5924 6159 56853 51 0 5 179 chain 4341 chr1 248956422 + 90122277 90122331 MER53 195 - 33 87 89228 54 chain 520340 chr1 248956422 + 90166853 90172724 L1PA5 6144 + 5 5879 2260 233 4 3 628 0 1 1069 1 0 1006 0 1 110 0 1 932 0 1 1304 5 6 579 chain 114352 chr1 248956422 + 90224858 90226519 THE1B-int 1605 + 54 1605 16496 213 7 13 121 0 64 246 1 0 456 9 11 64 0 2 53 20 17 219 180 0 72 chain 441982 chr1 248956422 + 90247585 90253448 L1PA7 6471 + 903 6457 4537 138 6 27 48 18 1 240 1 0 4 0 1 200 5 7 704 0 1 75 5 4 287 0 1 303 7 5 129 1 0 4 5 6 132 0 1 7 1 0 130 1 2 125 5 1 516 2 0 330 0 1 138 4 3 194 0 4 179 0 1 441 0 1 320 0 3 26 2 3 63 0 1 69 5 0 361 303 0 157 8 16 9 8 0 20 12 0 115 chain 26883 chr1 248956422 + 90264956 90265388 L1PA15 4387 + 3908 4327 46432 24 1 0 102 0 1 69 1 0 25 2 1 40 23 22 15 4 0 9 2 1 50 6 3 46 2 0 11 chain 37435 chr1 248956422 + 90316766 90317263 L1PA8 5853 + 5361 5853 36454 57 0 1 101 0 1 43 1 0 44 2 0 70 2 1 9 8 7 45 2 1 19 4 3 90 chain 38412 chr1 248956422 + 90329091 90329622 MLT2A2 560 + 0 545 35780 28 0 5 150 33 30 188 0 12 132 chain 152327 chr1 248956422 + 90431394 90433600 L1PB1 5432 + 3259 5424 12208 142 3 1 334 2 1 254 13 14 46 0 1 87 6 1 25 5 3 283 0 3 92 1 0 80 7 0 81 0 1 54 5 6 336 10 5 5 1 0 24 1 0 9 82 78 12 8 7 36 1 0 16 3 0 15 9 0 16 3 1 4 1 0 14 2 0 24 1 0 15 7 10 9 1 0 16 1 0 4 chain 32977 chr1 248956422 + 90523897 90524500 L1PREC2 3366 + 2478 3040 39533 232 0 1 4 1 0 37 2 0 47 9 8 43 1 0 4 3 0 13 55 42 12 0 7 6 30 18 10 23 9 38 3 1 30 chain 257598 chr1 248956422 + 90553372 90557316 L1PA5 6144 + 2250 6144 8041 1094 0 1 72 0 2 351 0 1 166 989 938 400 0 4 196 0 4 473 13 1 144 0 1 46 chain 88098 chr1 248956422 + 90555056 90556044 L1PA5 6144 - 1271 2259 19973 988 chain 26747 chr1 248956422 + 90583061 90583417 THE1A 353 + 0 353 46617 111 1 0 34 2 0 5 0 2 42 1 0 69 1 0 90 chain 5805 chr1 248956422 + 90589764 90589968 L1MDb 1215 + 948 1129 81895 32 70 65 31 3 0 12 10 1 13 0 3 5 9 0 19 chain 15352 chr1 248956422 + 90594230 90594480 L1PA17 2846 + 22 258 61849 5 1 0 8 1 0 51 0 1 6 19 6 34 8 9 8 1 0 108 chain 314503 chr1 248956422 + 90598166 90601997 L1PA7 6471 + 2612 6470 6517 28 0 1 223 3 1 24 6 10 64 0 6 92 0 1 34 0 3 121 1 0 4 0 1 276 1 0 335 1 0 90 0 1 46 0 1 117 2 3 1140 0 1 388 0 5 81 0 1 128 4 7 227 3 4 34 6 10 17 1 0 180 1 0 153 chain 40337 chr1 248956422 + 90636348 90636803 L1PA7 6471 + 4608 5063 34418 455 chain 28552 chr1 248956422 + 90654560 90655023 L1PA15 4387 + 3923 4365 44030 10 1 0 166 6 5 21 1 0 6 1 0 54 1 0 23 16 11 46 8 5 44 3 1 12 6 1 28 1 0 9 chain 17123 chr1 248956422 + 90657749 90657964 U3 216 + 0 216 59670 176 0 1 39 chain 19057 chr1 248956422 + 90757533 90757835 THE1B 368 + 0 306 57488 13 1 0 92 8 9 55 1 0 29 1 4 12 13 16 12 1 0 64 chain 74599 chr1 248956422 + 90772035 90772947 L1PA6 6164 + 5212 6154 22934 283 0 15 149 0 2 259 0 14 59 28 27 134 chain 29580 chr1 248956422 + 90867921 90868345 L1PA8 5853 + 5434 5853 42505 7 0 1 51 3 7 64 1 0 44 2 0 71 1 0 14 1 0 42 10 6 19 2 1 92 chain 11110 chr1 248956422 + 90872132 90872347 MER57F 435 + 17 238 68396 86 65 66 29 0 5 35 chain 4225 chr1 248956422 + 90984814 90984861 MLT1B 390 + 307 354 89973 47 chain 4781 chr1 248956422 + 90995933 90995985 MLT1A0 366 + 278 330 86792 52 chain 200042 chr1 248956422 + 90997580 91000000 L1P1 4361 + 4 2443 9719 115 2 16 82 4 0 10 4 9 6 5 0 548 0 1 106 1 0 88 4 1 269 0 1 152 0 5 296 0 1 226 0 1 19 5 9 478 chain 326866 chr1 248956422 + 91000001 91003696 L1PA5 6144 + 2443 6144 6268 622 6 11 94 1 0 1172 0 8 723 4 4 210 1 0 744 1 0 104 4 0 9 chain 4292 chr1 248956422 + 91003830 91003936 L1M4 1397 + 889 1016 89553 19 1 0 35 33 55 18 chain 31227 chr1 248956422 + 91039876 91040291 MLT2A1 477 + 0 409 40947 6 0 1 135 0 1 19 0 11 151 2 1 59 16 0 13 2 0 12 chain 372189 chr1 248956422 + 91040589 91045816 HERVL-int 5654 + 0 5654 5616 20 2 0 567 1 0 91 0 1 52 0 1 163 9 2 22 3 0 5 14 16 136 1 0 48 1 0 3 568 0 312 14 2 149 6 728 392 1 0 519 6 7 405 23 0 9 0 2 535 12 315 50 0 3 299 0 2 232 0 1 137 4 5 224 3 5 13 6 10 56 5 6 109 chain 32339 chr1 248956422 + 91045816 91046245 MLT2A1 477 + 0 477 40083 142 0 1 26 8 12 143 1 0 56 1 5 13 0 40 39 chain 25345 chr1 248956422 + 91063383 91063739 THE1A 353 + 0 353 48717 91 1 0 18 23 22 70 1 0 152 chain 65751 chr1 248956422 + 91085044 91086347 HUERS-P1-int 2401 + 148 1268 25013 4 1 0 14 9 4 31 9 0 4 48 0 26 1 0 12 4 0 34 4 0 14 15 12 10 44 20 12 5 1 9 15 0 4 9 0 13 1 0 13 1 0 43 3 0 8 5 4 33 1 0 8 2 0 23 18 0 26 7 4 14 10 1 16 9 6 24 2 1 96 6 0 15 14 17 97 3 0 6 4 3 175 1 0 14 1 0 7 2 0 48 2 1 19 1 2 26 3 1 9 1 0 28 3 0 64 11 15 29 chain 4641 chr1 248956422 + 91113227 91113280 L1MA3 4352 + 3427 3480 87584 53 chain 164413 chr1 248956422 + 91130963 91132973 L1P3 4156 + 0 2045 11465 219 0 10 22 1 0 68 2 1 337 3 4 14 23 47 93 0 1 10 1 2 1217 chain 25190 chr1 248956422 + 91132991 91133286 L1PA7 6471 + 6175 6470 48964 295 chain 25889 chr1 248956422 + 91159230 91159501 AluYa5 310 + 36 307 47883 271 chain 118160 chr1 248956422 + 91179131 91180485 HERV17-int 4347 + 2978 4332 15857 72 4 0 501 0 3 27 0 1 199 0 1 144 1 0 406 chain 28987 chr1 248956422 + 91180815 91181141 LTR17 781 + 0 326 43350 326 chain 4995 chr1 248956422 + 91203965 91204034 LTR56 451 + 6 71 85684 6 3 0 53 1 0 6 chain 5234 chr1 248956422 + 91206391 91206530 MER51B 395 + 0 108 84534 39 8 27 30 50 0 12 chain 499173 chr1 248956422 + 91211587 91216947 L1PA2 6032 + 672 6032 3158 5360 chain 34683 chr1 248956422 + 91242043 91242435 L1PA2 6032 + 5646 6031 38229 313 7 0 52 0 1 6 1 0 13 chain 87125 chr1 248956422 + 91256077 91257616 L1PREC2 3366 + 268 1578 20212 23 2 1 9 3 0 78 0 1 24 13 15 49 1 0 567 8 9 25 8 7 32 9 13 23 18 17 22 0 68 59 8 12 16 0 1 76 303 0 163 chain 5843 chr1 248956422 + 91261626 91261722 HY3 101 + 2 100 81720 57 14 16 25 chain 539701 chr1 248956422 + 91286649 91294208 L1PA3long 6157 + 2 6156 1356 774 0 128 46 4 0 118 0 2 766 1536 0 235 1 0 1812 0 1 1299 0 1 120 0 4 848 chain 484795 chr1 248956422 + 91296806 91302309 L1PA4 6152 + 1 5517 3539 1155 0 3 449 0 1 337 1 0 439 0 3 9 0 2 784 1 0 30 3 5 1140 0 2 793 0 5 166 3 0 193 chain 25236 chr1 248956422 + 91310548 91310906 THE1A 353 + 0 353 48889 105 6 5 92 1 0 32 13 11 34 1 0 74 chain 127506 chr1 248956422 + 91310906 91312768 THE1A-int 1579 + 0 1579 14354 25 1 0 375 10 11 40 282 0 227 0 1 101 6 4 795 chain 109506 chr1 248956422 + 91331503 91333314 L1MA2 4263 + 2635 4112 17120 7 1 0 90 323 0 167 3 4 253 6 8 71 1 0 158 1 6 185 6 2 76 1 0 133 14 11 150 12 9 40 0 1 52 20 14 33 1 0 7 chain 331505 chr1 248956422 + 91359089 91363618 L1PA11 4918 + 8 4578 6192 7 1 0 27 2 0 37 3 0 36 1 0 4 0 3 6 9 7 10 0 6 11 1 0 19 1 0 32 2 0 5 2 1 35 6 5 206 24 7 61 12 14 198 1 2 27 1 2 184 1 0 17 4 10 51 0 69 76 1 0 113 0 2 272 0 1 242 4 1 381 2 1 18 12 6 209 1 0 4 0 1 231 0 1 247 0 9 274 0 1 469 1 0 27 11 23 9 0 1 49 4 9 400 11 5 23 0 1 12 4 4 99 6 0 59 22 20 67 3 1 13 1 0 21 61 45 13 2 0 11 chain 449857 chr1 248956422 + 91366637 91371774 L1PA4 6152 + 2 5177 4395 140 11 25 542 1 4 429 0 2 272 0 5 525 1 0 927 0 6 76 6 8 79 1 2 394 0 1 1714 0 5 19 chain 31547 chr1 248956422 + 91387590 91387929 L1HS 6032 + 5693 6032 40705 339 chain 190041 chr1 248956422 + 91390551 91392751 L1PA6 6164 + 3949 6159 10110 413 0 4 666 0 1 157 0 1 29 0 5 90 1 0 439 0 1 248 2 1 11 0 2 137 2 0 5 chain 519010 chr1 248956422 + 91441821 91448272 L1PA6 6164 + 0 6151 2317 184 11 12 271 1 0 162 0 1 181 17 0 34 1 2 92 6 7 127 1 2 883 1 0 367 17 0 148 0 1 194 5 6 515 0 1 339 0 1 526 0 1 1257 0 5 87 311 0 480 7 11 37 0 1 157 0 27 32 chain 41280 chr1 248956422 + 91448551 91448993 L1HS 6032 + 5589 6031 33801 442 chain 75800 chr1 248956422 + 91466415 91467282 MER11D 897 + 0 897 22636 92 0 6 476 0 23 51 0 1 248 chain 4158 chr1 248956422 + 91469443 91469546 MLT1A1 405 + 300 405 90410 27 42 44 34 chain 4676 chr1 248956422 + 91485656 91485706 SVA_B 1603 + 1553 1603 87401 50 chain 31187 chr1 248956422 + 91627197 91627646 LTR7B 505 + 0 490 40986 108 0 10 65 13 75 22 29 0 85 1 0 76 14 13 36 chain 14387 chr1 248956422 + 91641276 91641437 THE1A-int 1579 + 1412 1574 63053 83 0 1 78 chain 5219 chr1 248956422 + 91642065 91642124 THE1A 353 + 293 352 84590 59 chain 8648 chr1 248956422 + 91737853 91738223 MLT2B4 540 + 0 492 73358 38 2 3 35 19 19 11 52 57 37 0 1 5 141 255 14 0 1 16 chain 12775 chr1 248956422 + 91764948 91765161 MER30 238 + 0 235 65480 22 1 9 77 4 0 15 26 41 26 0 3 42 chain 22531 chr1 248956422 + 91835989 91836249 AluSp 311 + 24 284 53069 260 chain 3158 chr1 248956422 + 91848344 91848380 MER5A1 166 + 101 137 98290 36 chain 3272 chr1 248956422 + 91854049 91854152 L1MA8 2339 + 2103 2179 97273 16 25 0 19 1 2 13 10 7 19 chain 5669 chr1 248956422 + 91865244 91865307 MER41A 554 + 403 466 82476 63 chain 124600 chr1 248956422 + 91973876 91975289 L1PA5 6144 + 4723 6141 14763 222 0 1 351 0 4 581 8 9 235 1 0 15 chain 2989 chr1 248956422 + 91978409 91978442 MADE1 96 - 59 92 99966 33 chain 27774 chr1 248956422 + 91998168 91998502 L1PA7 6471 + 6122 6466 45221 275 1 11 58 chain 15669 chr1 248956422 + 92214460 92214802 THE1D 372 + 0 338 61439 15 0 2 4 1 0 30 10 1 13 24 26 26 1 0 49 69 72 100 chain 4601 chr1 248956422 + 92243714 92243847 MER21C 908 + 430 575 87794 34 62 74 37 chain 470340 chr1 248956422 + 92253216 92258896 L1PA7 6471 + 749 6456 3846 7 2 0 127 0 2 104 1 0 282 24 23 31 0 2 66 0 3 145 0 1 217 1 0 148 0 1 241 0 8 104 1 0 132 0 1 29 0 3 215 1 0 185 0 2 236 4 0 404 0 3 32 2 0 42 1 5 20 0 8 131 3 1 114 6 5 180 1 0 658 0 4 142 0 4 167 8 9 338 26 10 282 0 5 70 0 2 12 0 3 593 7 8 18 0 3 115 1 0 4 chain 512776 chr1 248956422 + 92279485 92285620 L1PA6 6164 + 0 6159 2630 406 9 11 32 8 0 88 11 13 19 1 0 149 1 0 69 0 17 95 4 8 1047 1 0 380 3 0 856 2 1 568 0 8 251 0 1 44 2 1 1094 0 1 80 1 0 76 4 8 71 0 2 51 1 3 704 2 0 5 chain 20042 chr1 248956422 + 92293055 92293340 L1MA2 4263 + 3509 3796 56324 75 6 2 39 1 4 32 3 5 7 0 1 122 chain 16142 chr1 248956422 + 92355697 92355909 Tigger4a 237 + 23 236 60826 147 3 4 62 chain 478982 chr1 248956422 + 92388402 92394485 L1PA7 6471 + 6 6470 3657 183 1 0 8 15 14 27 137 333 42 7 8 100 5 15 57 1 76 171 10 31 160 0 4 32 0 1 1044 0 1 320 1 2 179 0 9 282 0 2 53 3 5 1157 2 1 350 0 4 55 0 51 686 0 5 146 2 1 177 0 1 508 0 1 162 chain 10280 chr1 248956422 + 92398158 92398331 L1MA3 4352 + 4187 4352 69848 13 1 2 58 2 0 22 1 0 6 1 0 26 1 0 14 6 2 22 chain 5690 chr1 248956422 + 92519925 92520021 L1MB8 1703 + 1485 1588 82389 13 13 20 16 0 1 29 1 0 24 chain 461679 chr1 248956422 + 92530218 92535917 L1PA7 6471 + 731 6468 4092 21 1 0 52 1 2 173 0 16 7 16 0 213 0 4 1291 9 11 119 0 1 56 1 3 574 1 2 56 1 0 171 1 0 15 10 5 7 1 0 19 0 4 46 9 7 134 0 4 207 0 5 256 0 2 43 1 2 380 1 0 67 28 29 462 7 8 28 0 7 313 10 5 65 0 5 28 0 6 25 7 9 75 0 7 435 1 0 255 chain 314953 chr1 248956422 + 92546712 92550235 L1PA5 6144 + 2343 5872 6508 96 7 8 753 0 2 888 0 2 566 1 0 1025 0 2 187 chain 438518 chr1 248956422 + 92589129 92594475 L1PA4 6152 + 0 5049 4599 1459 0 2 740 0 2 372 0 3 253 311 0 207 0 1 797 0 1 799 0 5 408 chain 23365 chr1 248956422 + 92610851 92611109 L1PA2 6032 + 5773 6031 51827 258 chain 34007 chr1 248956422 + 92614391 92614947 MLT2A1 477 + 0 477 38703 142 8 9 18 0 4 210 129 45 49 chain 331046 chr1 248956422 + 92614947 92619058 HERVL-int 5654 + 0 5639 6197 170 2 0 184 1 0 68 0 36 17 0 2 147 5 4 216 0 2 50 1 0 9 0 2 31 12 16 37 3 2 45 0 2 441 0 1 158 6 7 84 0 1477 131 4 0 3 16 0 750 4 6 740 1 2 258 0 2 176 3 6 5 1 0 130 0 20 202 chain 29597 chr1 248956422 + 92619079 92619505 MLT2A1 477 + 0 477 42487 20 15 22 94 5 7 25 1 5 49 0 8 144 2 0 31 0 32 40 chain 116549 chr1 248956422 + 92639688 92641177 L1PA8A 6298 + 4749 6291 16122 15 0 1 60 1 0 125 1 2 24 0 1 86 0 4 272 0 5 144 0 3 79 2 3 180 7 32 251 1 11 136 1 8 6 4 0 94 chain 36823 chr1 248956422 + 92674271 92674696 L1PA7 6471 + 6046 6470 36867 234 1 0 190 chain 417071 chr1 248956422 + 92683224 92688171 L1PA6 6164 + 805 5793 4919 132 9 12 99 0 5 13 1 2 5 1 0 317 0 8 48 1 0 888 1 0 522 0 1 104 0 2 226 0 1 50 0 4 99 0 2 135 1 0 241 0 1 230 0 1 58 0 2 355 0 4 125 0 2 819 0 4 107 0 1 45 0 1 64 0 2 251 chain 491631 chr1 248956422 + 92715490 92721678 L1PA6 6164 + 0 6156 3381 538 8 7 242 0 17 269 312 0 348 0 236 85 0 4 588 3 1 102 0 3 78 0 2 336 0 1 340 5 4 105 9 8 78 1 0 23 0 1 25 0 1 251 4 3 602 0 14 53 0 8 662 1 2 348 6 10 66 11 6 689 chain 73482 chr1 248956422 + 92723332 92724371 MER11A 1151 + 0 1151 23226 79 0 8 103 11 10 28 1 0 66 0 11 164 15 31 32 0 12 19 1 0 119 20 24 37 0 4 69 0 2 16 2 60 42 0 3 52 8 7 87 1 0 27 1 0 39 chain 6964 chr1 248956422 + 92747161 92747247 MER2 342 + 142 227 77731 62 1 0 23 chain 5755 chr1 248956422 + 92752721 92752822 LTR45 522 + 409 508 82108 15 11 12 10 3 0 62 chain 3407 chr1 248956422 + 92766752 92766791 MER44B 551 + 68 107 96013 39 chain 26949 chr1 248956422 + 92805688 92806042 THE1A 353 + 0 353 46341 84 1 0 4 0 1 15 7 6 243 chain 546836 chr1 248956422 + 92891523 92897658 L1PA4 6152 + 1 6143 920 279 2 3 464 2 0 117 0 8 439 6 5 2749 0 1 1110 0 1 721 2 1 244 chain 45167 chr1 248956422 + 92982979 92984067 Tigger1 2417 + 1458 2086 31488 57 11 12 58 165 1 58 0 1 64 0 3 26 304 0 163 1 2 110 0 2 71 chain 50291 chr1 248956422 + 93018003 93019139 L1PB3 3668 + 2816 3614 29454 28 6 10 134 2 0 9 4 1 84 1 4 22 0 1 63 0 1 118 1 0 87 1 0 4 322 9 87 20 4 24 1 0 22 12 10 22 13 9 13 1 0 13 9 6 13 chain 7327 chr1 248956422 + 93043625 93043711 Tigger3c 601 + 451 537 76576 86 chain 19165 chr1 248956422 + 93052433 93052649 L1PA4 6152 + 5927 6143 57381 216 chain 24872 chr1 248956422 + 93071830 93073126 Tigger1 2417 + 1588 1963 49489 83 4 8 144 623 0 31 1 2 32 308 2 40 0 3 30 chain 4956 chr1 248956422 + 93107560 93107634 Charlie1a 1436 + 416 491 85862 41 3 4 30 chain 9938 chr1 248956422 + 93161484 93161612 MER85 139 + 0 139 70555 94 0 11 34 chain 91069 chr1 248956422 + 93170094 93171415 LTR12C 1709 + 0 1709 19490 24 53 62 170 4 5 29 5 6 42 0 43 83 14 9 280 2 0 14 21 28 25 25 0 17 1 17 16 14 358 393 5 4 84 chain 4390 chr1 248956422 + 93192840 93192891 MER5A 189 + 25 76 88941 51 chain 327255 chr1 248956422 + 93265657 93269422 L1PA5 6144 + 2343 6130 6263 502 0 1 1108 0 3 309 0 4 171 0 2 183 1 0 98 0 12 320 13 5 85 0 5 140 0 4 835 chain 25907 chr1 248956422 + 93287322 93287690 THE1C 375 + 0 375 47850 102 3 6 10 0 1 8 3 0 15 7 11 30 2 3 24 0 3 45 1 0 91 1 0 26 chain 10646 chr1 248956422 + 93319212 93319508 MER30 238 + 66 237 69132 35 162 37 99 chain 97605 chr1 248956422 + 93390898 93392138 L1PA5 6144 + 2120 3255 18571 227 118 11 22 0 1 633 1 2 239 chain 7605 chr1 248956422 + 93391159 93391243 L1PA5 6144 + 2259 2343 74954 84 chain 23509 chr1 248956422 + 93396649 93396924 AluYk4 311 + 32 304 51578 249 3 0 23 chain 30867 chr1 248956422 + 93401559 93401944 THE1D-int 1627 + 15 400 41256 23 3 4 4 1 0 354 chain 5335 chr1 248956422 + 93454695 93454854 MER2 342 + 31 215 84036 20 57 81 28 2 0 24 6 9 22 chain 11158 chr1 248956422 + 93504382 93504518 THE1A 353 + 217 353 68331 136 chain 538546 chr1 248956422 + 93509600 93515927 L1PA3long 6157 + 1 6157 1421 152 0 1 17 6 6 403 0 4 192 0 128 249 9 12 1044 316 0 1050 0 4 1091 0 4 76 1 0 876 0 4 700 0 1 127 3 0 15 chain 8933 chr1 248956422 + 93630062 93630220 L1MA3 4352 + 4181 4352 72711 19 1 2 40 0 6 9 3 1 24 1 0 6 1 0 27 5 15 22 chain 11869 chr1 248956422 + 93634731 93634915 THE1B 368 + 174 368 67074 24 35 45 125 chain 60767 chr1 248956422 + 93643912 93644670 MER4E1 777 + 0 770 26160 23 1 2 128 0 3 5 0 4 299 5 4 4 0 1 68 1 9 59 4 0 161 chain 6902 chr1 248956422 + 93654417 93654561 MLT1E3 631 + 376 552 77949 75 47 79 22 chain 15932 chr1 248956422 + 93669788 93670067 L1PB1 5432 + 5158 5413 61116 11 2 0 51 2 1 16 1 0 19 0 1 24 1 0 15 24 12 19 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 9 chain 70790 chr1 248956422 + 93834103 93835024 HERVH-int 3825 + 2536 3825 23808 244 1 0 39 0 367 217 46 46 233 0 2 141 chain 3425 chr1 248956422 + 93847572 93847609 tRNA-Arg-AGA 37 + 0 37 95860 37 chain 483785 chr1 248956422 + 93855732 93861235 L1PA4 6152 + 1 5517 3557 55 1 0 617 11 7 877 0 2 176 0 2 575 6 1 916 0 2 19 0 4 737 0 5 358 0 4 277 2 0 269 0 4 287 0 2 320 chain 47294 chr1 248956422 + 93868362 93868952 L1PA7 6471 + 5825 6414 30538 359 0 4 9 9 0 110 3 4 51 1 4 48 chain 361619 chr1 248956422 + 93928648 93933363 L1PB1 5432 + 756 5395 5785 222 0 1 177 7 8 49 4 5 8 0 2 116 0 1 34 0 2 16 12 0 13 9 0 78 8 0 706 0 1 226 1 16 57 7 0 29 0 1 318 6 5 526 5 4 355 1 0 224 0 1 593 1 0 78 1 3 181 3 4 216 0 2 48 4 1 11 50 20 24 1 0 9 1 0 10 6 2 8 2 0 53 3 1 16 1 0 44 1 0 15 1 0 4 22 8 19 3 1 4 1 0 11 7 5 22 1 0 21 1 0 4 chain 59179 chr1 248956422 + 93935240 93936081 Tigger1 2417 + 909 1766 26611 60 0 2 136 25 27 271 0 3 42 1 0 18 0 2 197 34 36 35 0 6 22 chain 42343 chr1 248956422 + 93940712 93941197 L1PA5 6144 + 4013 4499 33162 347 0 1 138 chain 88295 chr1 248956422 + 94074158 94075329 L1PA8 5853 + 4488 5853 19988 242 9 11 103 0 1 109 8 190 139 0 3 113 0 15 150 1 0 44 2 0 73 1 0 11 0 1 5 12 8 34 2 1 19 1 0 93 chain 452102 chr1 248956422 + 94134119 94139294 L1PA4 6152 + 2 5184 4336 34 1 3 1493 0 1 26 0 2 154 0 1 600 18 12 246 1 4 1484 2 11 703 5 0 408 chain 26403 chr1 248956422 + 94150618 94150901 AluYk11 308 + 16 299 47116 283 chain 20595 chr1 248956422 + 94198984 94199246 L1PA6 6164 + 5900 6162 55643 8 2 0 101 1 0 4 2 3 135 0 2 9 chain 59085 chr1 248956422 + 94313434 94314133 L1PA6 6164 + 5457 6162 26642 139 2 8 242 0 1 311 1 0 4 chain 5144 chr1 248956422 + 94317699 94317781 L1MB3 1562 + 1468 1550 84938 17 3 4 33 2 1 27 chain 39964 chr1 248956422 + 94389251 94389759 MER9a3 513 + 0 513 34685 18 0 2 71 0 1 8 10 11 322 2 3 77 chain 2589 chr1 248956422 + 94422285 94422387 MER1B 344 - 109 210 103068 11 2 0 17 0 1 6 49 49 17 chain 19288 chr1 248956422 + 94428538 94428829 THE1B 368 + 8 368 57251 11 0 49 12 1 2 60 4 22 28 0 2 100 14 13 61 chain 124103 chr1 248956422 + 94428829 94430378 THE1B-int 1605 + 0 1592 14827 133 0 1 215 0 1 80 1 26 993 8 22 14 0 2 105 chain 36449 chr1 248956422 + 94444830 94445283 MER9a3 513 + 43 498 37105 68 0 1 65 0 1 164 0 1 90 0 1 22 2 0 42 chain 352264 chr1 248956422 + 94446084 94450303 HERVK9-int 4720 + 36 4720 5889 13 8 5 4 1 0 66 1 0 8 1 0 8 17 42 363 0 4 646 0 3 126 8 0 644 12 13 534 2 0 112 0 451 223 0 2 5 2 0 63 6 5 378 2 1 440 1 0 200 0 1 159 1 0 165 chain 39448 chr1 248956422 + 94450303 94450789 MER9a3 513 + 0 513 35046 22 0 1 87 0 1 68 0 1 94 12 30 17 0 7 106 0 1 21 2 0 57 chain 112545 chr1 248956422 + 94483498 94484799 L1PA5 6144 + 4838 6144 16740 459 0 4 184 0 2 168 0 1 154 2 3 326 3 0 5 chain 6613 chr1 248956422 + 94486228 94486339 MER2 342 + 234 342 78930 61 4 6 18 8 3 20 chain 101848 chr1 248956422 + 94492991 94494104 L1PA3long 6157 + 5041 6157 18081 269 0 4 510 1 0 333 chain 21450 chr1 248956422 + 94533639 94534367 Tigger2 2703 + 2272 2658 54586 20 0 1 5 40 69 103 363 0 124 3 4 7 12 0 35 0 2 16 chain 31253 chr1 248956422 + 94559164 94559540 L1PA6 6164 + 5782 6161 40928 162 0 3 55 2 0 5 1 3 151 chain 46459 chr1 248956422 + 94612993 94613534 MER41A 554 + 13 554 30860 541 chain 26190 chr1 248956422 + 94659427 94659892 LTR7Y 441 + 0 411 47441 196 62 0 49 1 0 5 69 78 83 chain 6071 chr1 248956422 + 94712506 94712588 MER53 195 + 114 195 80833 15 1 0 66 chain 53683 chr1 248956422 + 94734115 94734883 MER4E1 777 + 17 770 28329 73 0 1 44 23 0 165 7 17 12 0 19 86 1 2 37 14 0 71 2 0 6 15 1 39 0 3 147 0 2 9 0 2 17 chain 411663 chr1 248956422 + 94759818 94764608 L1PA6 6164 + 1346 6161 5009 317 1 4 550 5 0 115 1 2 932 0 4 130 0 1 456 0 4 1063 0 3 106 0 1 280 1 5 14 1 2 41 3 1 30 0 13 322 1 0 412 2 0 7 chain 6892 chr1 248956422 + 94880681 94880858 L1MB2 1706 + 1513 1686 77976 18 54 52 15 17 15 73 chain 42478 chr1 248956422 + 94931409 94931948 MER41A 554 + 0 554 33075 411 0 2 24 0 7 25 1 6 52 0 1 26 chain 3232 chr1 248956422 + 94937712 94937803 MER57E1 380 + 0 92 97655 21 42 43 28 chain 123534 chr1 248956422 + 95091212 95092800 LTR12C 1709 + 5 1709 14926 259 0 24 549 1 0 95 50 0 37 0 41 102 1 0 5 3 1 106 0 4 231 42 13 4 1 0 48 0 131 54 chain 4079 chr1 248956422 + 95092116 95092166 LTR12C 1709 + 1092 1139 45388 20 1 0 4 4 2 21 chain 42046 chr1 248956422 + 95167446 95168023 LTR14B 630 + 4 630 33330 210 4 22 50 0 7 58 0 21 143 1 0 25 11 14 60 3 4 12 chain 28155 chr1 248956422 + 95224968 95225268 AluYa5 310 + 0 298 44626 97 2 0 201 chain 3299 chr1 248956422 + 95262230 95262270 MADE1 96 + 1 41 97018 40 chain 3020 chr1 248956422 + 95414952 95414984 MER30B 195 + 46 78 99651 32 chain 284868 chr1 248956422 + 95455955 95459287 L1PA7 6471 + 3124 6468 7287 1063 0 4 70 0 1 344 0 2 464 0 1 548 0 3 86 1 0 428 0 1 42 0 1 286 chain 394452 chr1 248956422 + 95483856 95489235 L1PA8 5853 + 401 5853 5243 122 103 84 9 0 1 21 3 0 13 17 12 166 18 19 318 6 7 139 2 0 253 1 94 910 0 2 117 0 1 142 0 4 34 10 3 4 0 1 57 3 7 15 0 3 346 0 1 446 1 2 11 0 1 4 1 0 192 1 2 52 0 1 438 1 2 140 0 1 122 14 18 267 1 4 185 10 13 187 13 0 2 0 4 164 1 0 46 2 0 68 4 1 9 1 0 52 2 1 15 9 8 89 chain 13835 chr1 248956422 + 95493853 95494018 L1PA7 6471 + 6298 6464 63819 134 0 1 31 chain 80752 chr1 248956422 + 95556676 95557790 MER11A 1151 + 0 1146 21480 55 0 99 76 1 0 61 7 3 32 0 2 115 0 1 94 0 1 72 2 3 71 3 2 148 25 1 26 43 0 58 0 1 51 1 0 7 1 2 165 chain 133453 chr1 248956422 + 95588371 95589969 L1PA7 6471 + 4864 6466 13696 755 1 0 67 2 1 4 0 1 397 0 1 47 0 3 168 7 8 150 chain 25125 chr1 248956422 + 95629315 95629678 THE1C 375 + 0 368 49079 73 1 0 162 5 6 4 1 0 69 0 5 17 17 18 14 chain 8444 chr1 248956422 + 95632169 95632281 L1PA8 5853 + 5741 5853 73807 19 1 0 84 0 1 8 chain 28198 chr1 248956422 + 95633547 95633922 MLT2A1 477 + 0 379 44569 115 1 0 4 0 1 23 0 1 23 2 6 151 1 0 55 chain 15283 chr1 248956422 + 95648987 95649214 AluSg7 307 + 73 297 61937 58 0 1 6 3 4 62 2 3 68 11 5 17 chain 25788 chr1 248956422 + 95661910 95662579 THE1A 353 + 0 341 48032 111 1 0 91 1 0 10 337 11 118 chain 39204 chr1 248956422 + 95735078 95735609 PRIMA4_LTR 623 + 0 623 35210 96 5 4 88 4 0 47 0 30 16 4 13 7 1 0 27 0 59 236 chain 3120 chr1 248956422 + 95768597 95768884 Zaphod 902 + 331 618 98630 18 198 200 23 3 0 17 16 17 12 chain 524611 chr1 248956422 + 95796912 95803390 L1PA7 6471 + 0 6468 2067 55 0 2 5 8 4 101 1 0 190 0 1 349 18 8 646 0 1 189 0 1 160 0 1 415 0 17 494 17 0 55 2 1 1110 0 51 24 0 2 120 1 0 669 0 4 342 1 2 10 0 3 154 0 1 434 2 1 57 63 2 104 3 4 66 0 1 601 1 0 11 chain 8364 chr1 248956422 + 95814945 95815068 MLT1B 390 + 248 373 73986 77 10 11 28 0 1 8 chain 32337 chr1 248956422 + 95848731 95849174 THE1B-int 1605 + 0 479 40086 243 0 10 114 0 1 45 23 48 18 chain 9348 chr1 248956422 + 95914612 95914722 L1PA7 6471 + 6351 6461 71820 110 chain 4935 chr1 248956422 + 95942326 95942381 L1HS 6032 + 5977 6032 85977 55 chain 47957 chr1 248956422 + 95955451 95956023 LTR10C 591 + 0 591 30312 359 0 13 136 0 2 12 4 8 61 chain 45821 chr1 248956422 + 95959253 95959766 MER9a1 513 + 0 513 31151 513 chain 10129 chr1 248956422 + 96040766 96040895 HSMAR2 1300 + 680 809 70150 129 chain 4396 chr1 248956422 + 96045272 96045327 MER92B 628 + 441 495 88910 48 1 0 6 chain 8713 chr1 248956422 + 96058673 96058922 MLT1A0 366 + 105 354 73186 41 124 123 31 0 1 53 chain 145637 chr1 248956422 + 96063530 96065127 L1PA3long 6157 + 4561 6157 12640 1427 0 1 60 4 0 101 0 2 5 chain 8574 chr1 248956422 + 96080011 96080125 L1PA8 5853 + 5741 5853 73509 19 2 1 44 1 0 48 chain 28229 chr1 248956422 + 96111859 96112157 AluYd8 298 + 0 298 44519 298 chain 44007 chr1 248956422 + 96140121 96142807 LTR12_ 688 + 0 688 32125 52 2 0 192 8 9 86 0 2 72 0 103 65 2104 0 59 0 2 46 chain 58061 chr1 248956422 + 96147670 96148399 LTR12 884 + 0 884 26944 25 1 0 33 1 108 15 0 25 81 2 4 64 0 22 507 chain 35301 chr1 248956422 + 96152995 96153437 LTR12 884 + 0 504 37827 22 1 0 33 0 41 270 2 24 114 chain 7561 chr1 248956422 + 96161942 96162054 L1MA7 2200 + 1749 1863 75956 11 0 7 10 4 0 52 1 0 34 chain 117239 chr1 248956422 + 96173057 96174345 L1PA3long 6157 + 4863 6152 16010 443 0 1 845 chain 41121 chr1 248956422 + 96247314 96247863 MLT2A2 560 + 0 560 33900 180 1 0 219 3 14 77 7 8 62 chain 65508 chr1 248956422 + 96261678 96262412 L1PA4 6152 + 5417 6152 25072 233 0 1 501 chain 18933 chr1 248956422 + 96274459 96274837 THE1B 368 + 0 368 57615 88 14 0 16 31 32 41 69 72 119 chain 117227 chr1 248956422 + 96274846 96276396 THE1B-int 1605 + 0 1598 16013 430 0 25 223 21 33 50 36 47 790 chain 101011 chr1 248956422 + 96300874 96302062 L1PA7 6471 + 5278 6467 18183 336 0 1 85 0 2 757 2 0 8 chain 68491 chr1 248956422 + 96379385 96380145 L1PA3long 6157 - 2137 2897 24336 760 chain 193278 chr1 248956422 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115 0 1 640 11 10 231 1 3 137 3 2 252 1 4 318 3 5 53 2 3 752 1 2 210 11 12 461 1 2 329 0 9 457 0 1 134 18 22 27 1 2 140 chain 81265 chr1 248956422 + 96680104 96681053 L1PA6 6164 + 5211 6160 21375 949 chain 57978 chr1 248956422 + 96690685 96691749 LTR12 884 + 0 884 26973 25 1 0 331 0 22 33 10 14 139 0 103 109 308 0 108 chain 24526 chr1 248956422 + 96700605 96700983 THE1D 372 + 0 372 49986 49 9 0 81 4 0 5 6 10 20 26 29 178 chain 7217 chr1 248956422 + 96739923 96740014 Tigger4a 237 + 48 139 76890 91 chain 4928 chr1 248956422 + 96756698 96756766 L1MC1 2226 + 1979 2047 86008 16 2 0 39 0 2 11 chain 124649 chr1 248956422 + 96848354 96849930 THE1A-int 1579 + 0 1579 14751 249 0 1 250 8 6 300 0 1 121 1 2 53 6 8 588 chain 4131 chr1 248956422 + 96891855 96891935 MADE1 96 + 0 96 90568 31 2 18 47 chain 33352 chr1 248956422 + 96901751 96902243 LTR10B 488 + 22 488 39217 23 1 0 107 7 0 68 17 0 108 13 14 110 6 5 18 1 0 13 chain 66338 chr1 248956422 + 96915643 96916491 L1PA8A 6298 + 5405 6256 24863 84 2 1 19 1 0 86 5 7 40 0 1 435 0 1 112 1 2 63 chain 31959 chr1 248956422 + 96916566 96916951 L1PA6 6164 + 5774 6160 40369 359 0 1 26 chain 44146 chr1 248956422 + 96986821 96987375 MLT2A2 560 + 0 560 32050 161 7 8 34 0 1 149 0 4 203 chain 29185 chr1 248956422 + 97057496 97057868 THE1C 375 + 0 375 43074 185 1 2 126 0 2 60 chain 73027 chr1 248956422 + 97153404 97154470 L1PB1 5432 + 4222 5281 23310 238 0 1 26 0 1 4 6 5 124 3 0 56 0 9 118 0 2 9 0 1 16 12 4 262 18 16 24 1 0 6 1 0 12 21 18 46 2 1 16 2 1 43 chain 89648 chr1 248956422 + 97156300 97157276 L1PA3long 6157 + 5180 6157 19738 838 0 1 138 chain 94132 chr1 248956422 + 97162317 97163343 L1PA3long 6157 + 4332 5358 19025 1026 chain 87647 chr1 248956422 + 97163974 97165437 L1PREC2 3366 + 1768 3041 20109 232 1 0 4 1 2 497 0 2 130 6 7 9 154 0 89 2 1 5 0 1 7 2 0 52 1 0 19 1 0 25 1 0 4 3 0 13 28 21 12 2 0 5 22 17 30 3 0 5 28 14 70 chain 23597 chr1 248956422 + 97194153 97194499 THE1C 375 + 0 347 51442 88 0 1 46 4 0 6 10 14 30 4 0 7 0 5 82 9 8 60 chain 17249 chr1 248956422 + 97203443 97203638 L1PA2 6032 + 5834 6032 59526 152 0 3 43 chain 26973 chr1 248956422 + 97255330 97255681 THE1B 368 + 0 368 46304 40 1 16 64 0 1 17 0 4 27 1 0 23 2 0 176 chain 28509 chr1 248956422 + 97256330 97256700 THE1B 368 + 0 368 44113 174 1 0 34 12 11 149 chain 3744 chr1 248956422 + 97267365 97267406 L1P2 5180 + 1364 1405 93296 41 chain 62884 chr1 248956422 + 97276252 97277208 L1PA16 3655 + 2691 3588 25658 211 1 0 20 3 2 53 0 5 11 9 1 79 0 3 9 78 27 92 1 0 82 6 4 287 3 0 11 chain 357901 chr1 248956422 + 97287875 97291846 L1PA3long 6157 + 2182 6157 5822 2142 5 0 33 0 4 142 1 5 1641 0 1 7 chain 395740 chr1 248956422 + 97317944 97322243 L1PA2 6032 + 1728 6028 5222 3451 0 1 848 chain 506907 chr1 248956422 + 97357837 97363959 L1PA6 6164 + 5 6160 2894 153 37 38 260 10 9 322 0 17 623 4 9 16 15 14 409 0 1 337 1 5 179 9 18 151 7 0 616 8 9 180 12 13 568 0 1 457 0 2 874 0 1 99 0 1 424 0 1 14 1 0 210 0 1 115 3 0 8 chain 25961 chr1 248956422 + 97370210 97370582 L1PA8 5853 + 5486 5852 47774 35 2 4 39 1 0 104 3 0 14 1 0 18 11 10 30 2 1 19 1 0 92 chain 83954 chr1 248956422 + 97407533 97408607 HERVL-int 5654 + 4560 5654 20818 391 1 0 4 0 7 473 1 0 48 0 3 53 16 28 87 chain 32690 chr1 248956422 + 97463491 97463917 THE1B-int 1605 + 0 432 39772 111 0 4 150 5 7 160 chain 84050 chr1 248956422 + 97521273 97522284 L1PA7 6471 + 4669 5686 20794 165 5 10 530 1 0 6 0 2 20 0 2 217 2 0 65 chain 3235 chr1 248956422 + 97556092 97556131 MER96 175 - 41 80 97611 39 chain 16392 chr1 248956422 + 97589302 97589581 THE1C 375 + 30 339 60534 45 0 21 17 0 1 37 1 2 10 23 24 41 14 21 9 1 0 81 chain 19013 chr1 248956422 + 97605244 97605591 THE1D 372 + 0 332 57538 12 1 3 36 32 13 102 51 52 32 0 1 81 chain 187934 chr1 248956422 + 97641459 97644090 L1PA7 6471 + 4169 6467 10214 37 1 0 419 1 0 183 0 2 80 0 3 52 0 4 6 4 5 350 344 0 197 4 6 104 5 4 373 0 2 471 chain 27136 chr1 248956422 + 97642596 97642888 L1PA3long 6157 + 5862 6154 46070 292 chain 115720 chr1 248956422 + 97684488 97686059 L1PA10 4194 + 2583 4161 16286 80 33 25 9 0 3 501 0 1 4 1 0 13 0 1 42 0 1 70 0 1 62 1 0 29 0 1 214 7 9 41 3 4 9 4 7 84 0 4 174 42 45 99 3 0 34 1 0 11 chain 26606 chr1 248956422 + 97693015 97693317 AluY 311 + 7 309 46821 302 chain 21598 chr1 248956422 + 97825538 97825781 L1PA5 6144 + 5901 6143 54359 101 1 0 141 chain 26984 chr1 248956422 + 97887705 97888076 THE1C 375 + 0 375 46294 66 1 0 59 3 0 58 2 3 15 0 3 160 0 4 7 chain 7087 chr1 248956422 + 97955089 97955413 MLT1A0 366 + 2 350 77306 21 218 242 85 chain 45929 chr1 248956422 + 97971423 97971918 L1PA2 6032 + 5536 6031 31087 495 chain 49837 chr1 248956422 + 98108933 98109996 L1PA2 6032 + 5013 6031 29622 300 41 0 256 4 0 462 chain 18870 chr1 248956422 + 98123829 98124171 THE1B 368 + 0 366 57685 44 5 20 58 33 33 17 1 0 24 3 0 5 29 42 123 chain 1869 chr1 248956422 + 98154116 98154561 L1PA4 6152 + 4564 5009 28236 445 chain 113240 chr1 248956422 + 98154871 98156529 L1PREC2 3366 + 1326 2963 16642 189 0 3 561 0 2 345 9 12 35 23 16 130 9 14 55 6 0 23 3 0 41 2 0 9 0 1 35 6 10 43 90 72 22 11 8 11 chain 166708 chr1 248956422 + 98160244 98162176 L1PA5 6144 + 3550 6130 11292 131 0 1 178 0 1 194 0 10 101 0 624 638 0 11 558 2 1 4 0 1 41 0 1 85 chain 1764 chr1 248956422 + 98166546 98166966 L1PA4 6152 + 5727 6152 28236 414 0 5 6 chain 3098 chr1 248956422 + 98219919 98219953 MER5A1 166 + 43 77 98807 34 chain 324762 chr1 248956422 + 98233916 98238368 L1PA11 4918 + 3 4508 6316 23 0 5 11 2 0 36 4 1 36 22 21 45 1 0 32 9 6 250 7 16 133 0 1 192 0 1 119 1 4 420 6 5 11 8 17 35 0 1 237 0 1 151 0 1 433 0 6 11 2 3 34 0 1 13 19 19 29 1 5 327 6 13 10 4 11 259 0 2 208 0 1 34 1 4 297 0 2 5 6 5 307 19 21 117 0 1 338 1 0 34 0 1 13 0 3 12 19 16 61 12 10 9 1 0 19 chain 4204 chr1 248956422 + 98243954 98244001 MER3 215 + 168 215 90092 47 chain 30298 chr1 248956422 + 98249667 98250057 THE1B-int 1605 + 38 429 41765 263 1 0 27 5 7 94 chain 13366 chr1 248956422 + 98271949 98272117 L1PA11 4918 + 3670 3838 64518 168 chain 34095 chr1 248956422 + 98272122 98272963 L1PA11 4918 + 3844 4317 38635 200 386 0 52 0 13 75 0 1 45 3 7 80 chain 15818 chr1 248956422 + 98272978 98273247 L1PA11 4918 + 4328 4578 61263 147 2 0 13 1 0 20 4 0 9 8 3 15 8 4 15 1 0 12 3 1 11 chain 49134 chr1 248956422 + 98277303 98277950 PABL_A 660 + 0 660 29892 56 0 4 225 6 7 117 0 4 100 1 2 48 1 0 10 0 1 53 0 3 30 chain 104503 chr1 248956422 + 98285505 98286789 L1PA6 6164 + 4145 5439 17757 156 0 2 136 17 21 183 6 0 136 0 1 535 1 8 68 0 2 46 chain 47442 chr1 248956422 + 98301864 98302392 L1P1 4361 + 3347 3875 30491 528 chain 22807 chr1 248956422 + 98310474 98310843 L1MA2 4263 + 3753 4105 52651 43 13 10 45 3 0 6 1 0 94 16 14 70 1 0 23 15 8 39 chain 29004 chr1 248956422 + 98319272 98319642 MLT2A1 477 + 4 383 43313 135 1 3 27 4 1 9 0 1 25 0 1 142 3 11 24 chain 22298 chr1 248956422 + 98365616 98365867 L1PA4 6152 + 5892 6143 53412 251 chain 7230 chr1 248956422 + 98442202 98442508 L1MC1 2226 + 1919 2196 76861 47 30 26 31 67 58 5 2 0 12 68 55 30 1 0 13 chain 18900 chr1 248956422 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98630437 L1PA4 6152 + 5383 6143 24433 104 0 1 655 chain 27207 chr1 248956422 + 98694089 98694390 AluYk4 311 + 1 302 45955 301 chain 4775 chr1 248956422 + 98721117 98721234 Tigger4a 237 - 119 237 86833 22 46 47 49 chain 263291 chr1 248956422 + 98727259 98730856 L1PA10 4194 + 329 4041 7870 6 2 0 19 1 0 9 1 0 9 0 3 7 1 0 13 4 0 3 1 0 5 3 0 14 0 1 64 13 7 114 2 0 81 14 5 69 30 31 416 0 1 233 6 93 263 1 2 35 0 4 386 0 4 153 14 25 225 0 1 20 4 0 12 0 1 6 8 31 124 1 0 4 0 1 132 0 2 509 0 1 140 7 11 25 0 1 101 0 1 83 5 6 94 0 2 20 1 0 84 chain 471942 chr1 248956422 + 98783635 98790165 L1PA8A 6298 + 30 6290 3814 26 1 0 11 3 0 3 2 0 8 6 1 21 3 0 19 1 0 4 2 0 10 21 15 9 2 1 10 1 0 9 1 0 12 2 0 15 8 5 12 1 0 8 2 1 5 1 0 6 4 3 13 14 11 38 7 6 18 10 0 71 0 6 19 1 0 6 4 2 77 1 0 261 28 126 221 27 9 11 1 3 120 0 3 230 1 0 562 2 1 117 334 0 155 0 4 167 11 0 212 5 15 20 0 10 211 0 4 432 1 0 8 0 4 438 0 1 5 1 0 8 0 1 56 5 4 134 4 6 21 0 1 263 2 3 464 1 3 65 0 1 43 0 2 338 0 1 214 9 10 152 0 1 45 0 1 73 13 7 126 0 1 385 chain 11310 chr1 248956422 + 98810611 98811052 L1PA15-16 3068 + 2443 2800 68072 15 5 1 19 1 0 12 1 0 8 1 0 8 1 0 28 0 1 15 1 0 4 1 0 14 1 0 10 1 0 5 1 0 16 3 0 3 4 0 7 121 83 15 75 50 32 2 0 11 chain 40842 chr1 248956422 + 98859889 98860372 L1PA5 6144 + 5659 6144 34068 322 8 12 6 4 0 131 1 3 11 chain 7577 chr1 248956422 + 98884640 98884957 MLT1B 390 + 0 341 75913 20 4 0 9 0 1 17 198 225 69 chain 37790 chr1 248956422 + 98956930 98957345 L1PA3long 6157 + 5741 6156 36213 415 chain 24903 chr1 248956422 + 98994884 98995251 L1PA15 4387 + 3892 4253 49426 8 0 3 30 1 0 171 1 0 27 3 2 52 2 1 21 4 0 9 2 1 36 chain 4077 chr1 248956422 + 99030076 99030122 U5 65 + 0 46 90900 46 chain 439134 chr1 248956422 + 99039867 99046033 L1PA8 5853 + 50 5853 4584 22 75 36 81 12 0 14 0 1 102 12 0 311 0 4 267 0 1 235 0 1 45 0 1 20 5 6 533 0 1 20 0 1 274 19 0 59 0 3 358 0 2 183 0 1 45 7 9 195 2 1 47 0 1 4 3 7 36 6 21 156 157 61 179 1 0 329 2 14 498 0 1 285 0 1 193 2 3 34 299 0 246 1 0 7 1 4 74 0 3 478 1 0 5 15 73 36 2 1 9 7 13 5 2 0 37 1 0 17 2 0 93 chain 11903 chr1 248956422 + 99043021 99043156 LTR5B 1012 + 877 1012 66996 135 chain 20375 chr1 248956422 + 99088246 99088578 THE1B 368 + 0 356 55918 44 0 15 110 2 0 6 3 4 19 14 16 10 20 28 104 chain 17297 chr1 248956422 + 99097815 99098024 L1PA8 5853 + 5354 5564 59461 167 0 1 42 chain 21467 chr1 248956422 + 99098025 99098320 L1PA8 5853 + 5564 5853 54557 44 2 0 74 1 0 11 11 10 37 2 1 19 1 0 93 chain 22384 chr1 248956422 + 99099223 99099495 L1PA7 6471 + 5832 6105 53297 118 0 1 154 chain 78215 chr1 248956422 + 99101787 99102784 L1PA3long 6157 + 5171 6141 22046 57 27 0 913 chain 60620 chr1 248956422 + 99138103 99138863 MER4E1 777 + 0 770 26199 14 4 7 109 1 0 61 1 2 49 1 0 298 2 10 220 chain 4941 chr1 248956422 + 99140575 99140635 MER34C_ 573 + 458 518 85930 60 chain 21997 chr1 248956422 + 99164816 99165171 THE1A 353 + 0 352 53839 15 3 1 31 17 18 15 15 14 18 0 1 6 7 6 91 1 0 136 chain 58158 chr1 248956422 + 99187346 99188040 L1PA7 6471 + 5771 6469 26916 226 1 3 136 0 1 269 0 1 62 chain 13219 chr1 248956422 + 99246490 99246658 AluSp 311 + 28 196 64745 114 3 0 6 1 4 44 chain 2855 chr1 248956422 + 99288740 99288800 L1MA4 2864 + 2783 2835 101200 26 16 8 18 chain 20245 chr1 248956422 + 99331794 99332156 THE1C 375 + 0 375 56086 101 12 13 59 58 69 30 0 2 5 3 0 49 1 3 44 chain 166861 chr1 248956422 + 99341687 99343708 L1PA7 6471 + 4448 6470 11280 576 0 5 585 0 3 60 16 3 18 0 2 213 0 1 56 0 2 438 0 1 59 chain 149879 chr1 248956422 + 99354422 99356134 L1P1 4361 + 884 2594 12354 150 4 3 187 7 6 1364 chain 34680 chr1 248956422 + 99374176 99374634 LTR71A 459 + 0 459 38232 30 1 2 237 3 5 164 9 7 14 chain 28535 chr1 248956422 + 99378196 99378494 AluYd8 298 + 0 298 44065 298 chain 48774 chr1 248956422 + 99381479 99382004 L1PA2 6032 + 5506 6031 30021 525 chain 128835 chr1 248956422 + 99389520 99390892 L1HS 6032 + 3666 5051 14174 290 0 13 1082 chain 31536 chr1 248956422 + 99393008 99393446 MLT2A1 477 + 0 471 40714 164 12 9 6 0 1 25 0 1 176 24 58 31 chain 371139 chr1 248956422 + 99418317 99423782 L1PB1 5432 + 30 5422 5631 272 14 13 133 17 19 120 0 4 175 5 3 4 0 1 44 5 8 569 10 0 9 9 18 11 3 4 165 0 12 7 13 1 15 0 1 36 23 22 46 22 16 494 7 8 141 9 0 10 0 9 90 1 6 65 1 6 241 7 6 463 7 0 66 2 3 23 0 2 300 0 1 40 1 0 74 0 1 155 0 1 203 1 5 47 1 12 34 7 11 102 3 4 14 0 1 213 0 4 8 2 0 57 0 1 51 9 6 71 53 61 126 3 0 94 155 71 9 2 0 52 2 1 15 1 0 44 1 0 11 29 17 18 3 1 5 1 0 14 2 0 6 0 1 17 1 0 22 2 1 11 1 0 18 chain 72327 chr1 248956422 + 99450141 99451262 L1MA3 4352 + 3250 4352 23459 36 1 14 70 0 3 23 8 7 331 5 4 166 0 1 153 81 61 63 6 1 75 2 0 24 2 1 5 1 0 29 1 0 11 1 0 4 6 3 17 chain 140664 chr1 248956422 + 99507602 99509465 SVA_A 1864 + 29 1864 13048 68 0 24 149 1 0 271 0 76 34 3 0 149 3 0 12 0 1 73 2 1 20 3 0 182 13 11 17 39 0 13 17 13 26 37 0 113 2 0 40 34 0 542 chain 2182 chr1 248956422 + 99508697 99508734 SVA_A 1864 + 985 1022 30516 37 chain 39320 chr1 248956422 + 99509510 99509963 LTR7 482 + 0 482 35136 87 1 0 35 1 0 108 0 31 221 chain 294870 chr1 248956422 + 99509965 99513662 HERVH-int 3825 + 0 3825 6987 212 0 11 33 0 5 271 5 0 38 1 0 10 1 0 10 4 0 13 71 1 15 1 0 11 4 42 24 2 1 28 43 0 6 41 0 48 1 0 444 15 0 462 4 31 147 0 18 1239 8 218 345 0 2 140 chain 38054 chr1 248956422 + 99514922 99515367 LTR7 482 + 0 482 36029 91 0 3 136 0 31 116 0 1 11 0 2 91 chain 5662 chr1 248956422 + 99515410 99515554 L1MA5A 2387 + 2238 2359 82503 18 1 0 39 1 0 7 34 15 8 0 1 4 2 0 9 2 1 19 chain 126712 chr1 248956422 + 99520463 99521879 L1PA4 6152 + 4735 6152 14447 431 3 0 132 0 4 850 chain 126514 chr1 248956422 + 99553791 99555496 L1PB3 3668 + 1833 3500 14481 43 5 6 227 8 0 140 7 3 90 0 1 256 0 1 68 1 0 87 2 1 104 0 1 96 0 1 30 10 8 7 7 0 82 2 1 189 1 0 15 1 0 96 2 0 4 0 1 87 20 4 18 chain 44861 chr1 248956422 + 99581462 99582181 L1PA14 3548 + 2767 3485 31659 4 0 1 166 10 8 7 2 0 47 3 19 95 23 17 6 1 0 29 0 1 54 1 0 109 1 0 12 5 1 36 4 2 11 1 0 6 0 9 7 1 0 42 18 11 18 chain 24324 chr1 248956422 + 99597760 99598019 L1PA3long 6157 + 5898 6157 50301 259 chain 8741 chr1 248956422 + 99615577 99615870 L1MC1 2226 + 1864 2129 73113 12 18 12 29 1 0 33 3 0 9 15 15 6 3 0 15 13 11 39 70 58 19 1 0 7 chain 73752 chr1 248956422 + 99758374 99759405 MER11A 1151 + 0 1144 23153 55 0 99 22 8 0 44 7 11 61 8 4 83 1 3 58 5 6 92 0 1 145 5 6 131 8 41 22 18 0 37 0 1 72 0 1 149 chain 9432 chr1 248956422 + 99811052 99811425 MLT1A0 366 + 0 354 71631 23 0 204 10 230 7 110 chain 132157 chr1 248956422 + 99822930 99824426 SVA_D 2077 + 9 2077 13811 306 0 1 222 0 40 273 0 40 25 2 491 37 0 1 6 1 2 624 chain 15464 chr1 248956422 + 99830226 99830396 L1PA2 6032 + 5862 6032 61702 170 chain 27938 chr1 248956422 + 99833287 99833596 AluYk11 308 + 0 306 44971 301 3 0 5 chain 16404 chr1 248956422 + 99834161 99834509 L1PB1 5432 + 5114 5430 60512 24 1 0 4 3 2 14 5 1 8 2 0 52 1 0 16 2 1 45 1 0 9 30 18 18 3 1 5 1 0 14 2 0 24 1 0 23 1 0 23 2 0 5 0 1 4 1 0 4 chain 26591 chr1 248956422 + 99837255 99837548 AluSp 311 + 0 296 46848 91 0 3 202 chain 27423 chr1 248956422 + 99840359 99840713 THE1B 368 + 0 368 45673 44 1 16 48 1 0 12 0 1 55 1 0 192 chain 5076 chr1 248956422 + 99938244 99938304 MER34A1 583 + 0 60 85269 60 chain 39195 chr1 248956422 + 99959308 99959826 LTR6B 557 + 0 557 35220 22 7 35 15 1 16 313 6 0 83 9 10 6 0 1 56 chain 35354 chr1 248956422 + 99960290 99960684 L1PA4 6152 + 5643 6038 37798 371 0 1 23 chain 10977 chr1 248956422 + 100030404 100030592 MER30 238 + 30 236 68582 77 4 0 6 2 25 14 5 7 40 11 8 29 chain 46956 chr1 248956422 + 100166240 100166817 THE1B-int 1605 + 0 603 30676 95 1 2 333 0 25 148 chain 11374 chr1 248956422 + 100166853 100167026 THE1B 368 + 193 368 67962 12 5 9 13 4 3 12 3 2 124 chain 529168 chr1 248956422 + 100199602 100206083 L1PA7 6471 + 3 6470 1872 397 6 3 48 9 4 314 0 1 710 0 7 298 0 1 24 1 0 225 1 0 601 6 0 65 4 7 185 34 15 397 6 7 21 19 0 151 3 2 11 1 0 503 1 0 419 2 0 74 1 2 490 2 1 182 1 0 271 0 1 181 1 0 9 0 1 135 0 5 304 5 1 108 0 28 77 29 28 137 0 4 12 chain 79451 chr1 248956422 + 100263767 100264863 MER11A 1151 + 0 1151 21752 55 0 99 76 1 0 64 4 0 146 5 6 92 0 1 145 5 6 120 0 26 26 43 0 24 22 3 31 8 1 60 6 7 163 chain 11422 chr1 248956422 + 100275074 100275217 L1PA16 3655 + 3421 3568 67876 95 0 4 48 chain 22525 chr1 248956422 + 100337738 100338026 AluSp 311 + 15 306 53078 54 7 10 227 chain 22597 chr1 248956422 + 100340048 100340305 L1PA4 6152 + 5895 6152 52989 257 chain 70435 chr1 248956422 + 100375502 100376299 L1PA5 6144 + 5338 6131 23883 639 4 0 154 chain 10270 chr1 248956422 + 100396994 100397130 MER30 238 + 63 218 69864 51 2 24 61 3 0 19 chain 20772 chr1 248956422 + 100554903 100555152 L1PB1 5432 + 4278 4527 55402 249 chain 34650 chr1 248956422 + 100567578 100568163 MLT2A1 477 + 0 477 38254 169 4 1 9 0 1 23 0 1 187 156 49 37 chain 44836 chr1 248956422 + 100568163 100568701 HERVL-int 5654 + 0 539 31675 20 2 0 105 0 3 411 chain 21287 chr1 248956422 + 100568701 100568958 L1PA7 6471 + 5794 6051 54787 257 chain 33636 chr1 248956422 + 100568958 100569348 L1PA7 6471 + 6062 6453 38973 77 0 1 313 chain 21203 chr1 248956422 + 100571832 100572106 L1PREC2 3366 + 2011 2290 54879 191 6 5 43 0 4 29 0 2 5 chain 85378 chr1 248956422 + 100592346 100593450 L1P3 4156 + 742 1834 20551 25 0 12 231 0 1 126 0 8 124 7 8 337 0 1 116 53 18 85 chain 21731 chr1 248956422 + 100653114 100653445 L1PA11 4918 + 4184 4508 54192 126 0 4 14 5 0 67 1 0 4 0 1 4 8 5 63 2 0 10 11 10 16 chain 51169 chr1 248956422 + 100712668 100713467 LTR12 884 + 0 884 29173 12 2 3 148 0 134 58 0 22 104 0 1 43 1 4 28 0 9 36 118 0 135 0 33 114 chain 2719 chr1 248956422 + 100713134 100713204 LTR12 884 + 636 705 74506 32 1 0 37 chain 39338 chr1 248956422 + 100778169 100778622 L1PA5 6144 + 5681 6135 35122 190 0 1 263 chain 32288 chr1 248956422 + 100784023 100784536 MLT2A1 477 + 0 477 40121 170 4 1 8 0 1 24 0 1 166 25 0 15 1 43 10 53 1 37 chain 2602 chr1 248956422 + 100796413 100796441 L1MA10 1535 + 1474 1502 102988 28 chain 16418 chr1 248956422 + 100800996 100801610 MER11A 1151 + 1 727 22572 61 1 100 129 0 5 88 1 0 4 0 1 54 0 1 87 0 7 22 1 0 125 4 5 37 chain 89849 chr1 248956422 + 100802427 100803436 L1PA4 6152 + 4359 5371 19709 39 0 1 745 0 1 155 0 1 70 chain 10749 chr1 248956422 + 100803436 100803838 MER11A 1151 + 727 1151 22572 73 11 36 25 5 2 288 chain 341695 chr1 248956422 + 100813600 100818350 L1PB1 5432 + 907 5420 6033 155 0 1 184 0 4 152 7 0 211 0 1 77 1 7 7 15 0 123 0 1 274 7 9 208 0 6 167 10 0 348 1 0 37 10 21 668 0 1 157 17 7 225 2 0 241 0 6 109 0 15 299 3 0 17 0 2 120 0 2 36 5 13 136 54 22 127 198 4 7 1 0 24 0 2 6 1 0 14 4 0 8 2 0 52 7 6 11 8 7 36 1 0 16 4 0 14 10 1 16 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 7 0 1 8 chain 468775 chr1 248956422 + 100819964 100826205 L1PA7 6471 + 5 6465 3887 162 6 5 25 0 1 4 11 9 110 108 305 17 0 1 11 11 11 11 32 32 12 5 15 24 1 2 31 1 76 177 0 21 106 1 22 1011 7 1 434 1 0 148 6 7 135 1 0 152 4 5 396 4 2 5 0 2 327 110 0 160 0 1 4 1 0 24 14 13 110 0 1 427 4 5 104 1 9 271 2 0 318 0 2 350 3 2 87 1 2 228 0 1 381 6 7 138 chain 3107 chr1 248956422 + 100892044 100892078 HERVL-int 5654 + 5620 5654 98725 34 chain 132155 chr1 248956422 + 101113097 101114644 L1PA6 6164 + 4616 6161 13812 33 1 0 666 3 0 171 0 1 339 0 1 189 1 3 135 2 0 7 chain 4917 chr1 248956422 + 101139268 101139330 LTR16D 553 + 426 489 86070 25 0 1 37 chain 132509 chr1 248956422 + 101160173 101189501 L1PA7 6471 + 3758 6470 13781 78 3 0 153 14 8 11 0 1 197 2 1 333 0 4 117 0 1 239 0 1 76 5 0 285 27099 490 586 1 2 129 chain 4445 chr1 248956422 + 101166489 101166539 MER50 708 + 400 450 88629 50 chain 200009 chr1 248956422 + 101230366 101232705 L1PA7 6471 + 4110 6455 9720 558 0 4 948 2 1 88 1 2 170 0 1 425 1 2 146 chain 18227 chr1 248956422 + 101324121 101324542 MER51B 395 + 0 395 58431 58 27 71 15 16 0 22 61 8 11 1 0 44 54 54 112 chain 25241 chr1 248956422 + 101342862 101343223 THE1B 368 + 0 367 48886 33 7 22 117 4 1 23 8 3 94 1 0 74 chain 57180 chr1 248956422 + 101362553 101363313 THE1A-int 1579 + 805 1574 27202 177 9 8 55 12 15 135 11 14 67 8 12 286 chain 28253 chr1 248956422 + 101363318 101363672 THE1A 353 + 0 353 44477 108 1 0 245 chain 388557 chr1 248956422 + 101411330 101416718 L1PB1 5432 + 22 5404 5339 136 6 13 135 1 0 245 0 2 212 0 2 318 3 0 287 0 1 13 51 66 239 0 6 26 0 3 479 57 0 9 0 57 50 0 37 142 0 2 12 0 1 328 2 0 83 3 5 280 12 8 217 0 1 286 27 14 65 1 0 128 0 3 29 0 1 191 2 1 5 0 1 283 5 6 38 0 2 200 19 0 114 17 12 298 19 0 20 1 0 13 1 0 9 7 6 5 2 0 53 2 1 16 15 15 21 8 7 16 1 0 6 16 6 19 2 0 5 1 0 14 3 1 23 1 0 22 1 0 12 chain 16483 chr1 248956422 + 101443122 101443344 L1PA8 5853 + 5620 5853 60402 55 0 13 52 2 1 19 1 0 93 chain 4315 chr1 248956422 + 101447113 101447164 MER50 708 + 558 609 89397 51 chain 50366 chr1 248956422 + 101450582 101451218 L1PA6 6164 + 5518 6162 29425 308 1 2 127 0 3 12 0 2 30 16 17 39 1 2 102 chain 71804 chr1 248956422 + 101555483 101556347 MER11D 897 + 0 897 23592 176 2 11 406 1 24 165 0 1 114 chain 8584 chr1 248956422 + 101611467 101611573 L1PA15 4387 + 3988 4095 73486 51 0 1 55 chain 117288 chr1 248956422 + 101628648 101629938 L1PA3long 6157 + 4860 6149 16002 1038 1 0 251 chain 40423 chr1 248956422 + 101670298 101670807 MER41C 542 + 0 531 34366 49 0 1 261 0 21 199 chain 22260 chr1 248956422 + 101673764 101674104 THE1B 368 + 1 348 53463 43 5 20 108 10 9 19 15 9 84 1 0 55 chain 93966 chr1 248956422 + 101692149 101693261 L1PA7 6471 + 5019 6137 19043 508 0 3 86 1 5 6 2 0 217 0 1 292 chain 22946 chr1 248956422 + 101700375 101700621 L1PA5 6144 + 5890 6136 52453 246 chain 84076 chr1 248956422 + 101766363 101767415 L1PA7 6471 + 5419 6462 20788 73 8 1 65 0 6 57 2 0 370 15 7 133 0 1 322 0 1 7 chain 45089 chr1 248956422 + 101785648 101786188 L1PA8A 6298 + 5748 6288 31534 540 chain 79854 chr1 248956422 + 101811396 101812329 L1PA5 6144 + 5190 6128 21651 48 5 6 13 8 9 27 0 1 224 0 1 274 0 1 334 chain 122347 chr1 248956422 + 101888067 101889471 L1PA5 6144 + 4550 5953 15136 492 9 9 236 1 0 666 chain 16767 chr1 248956422 + 101979310 101979594 THE1D 372 + 1 329 60070 49 9 0 23 5 6 87 33 34 70 0 51 8 chain 50290 chr1 248956422 + 101979605 101980308 THE1D-int 1627 + 919 1627 29455 119 1 2 147 9 6 136 20 21 83 0 4 24 4 5 47 1 0 81 0 1 22 0 1 9 chain 4964 chr1 248956422 + 102018706 102018784 L1PB1 5432 + 5347 5422 85829 23 1 0 21 1 0 13 1 0 18 chain 39507 chr1 248956422 + 102028736 102029222 L1PA6 6164 + 5659 6156 35006 44 0 13 293 2 0 147 chain 50872 chr1 248956422 + 102031013 102031721 Charlie3 2679 + 19 802 29249 15 39 41 327 8 69 40 1 12 57 0 1 221 chain 64947 chr1 248956422 + 102065039 102065792 L1PA4 6152 + 4767 5520 25201 753 chain 121578 chr1 248956422 + 102131696 102133283 L1PA10 4194 + 2511 4113 15246 156 8 15 10 6 9 261 0 1 156 0 5 5 1 0 258 0 1 368 7 6 5 0 1 281 1 0 64 chain 71621 chr1 248956422 + 102133419 102134946 L1PA3long 6157 + 4648 6146 23633 478 29 0 1020 chain 250152 chr1 248956422 + 102139390 102142579 L1PA7 6471 + 2293 6470 8232 215 0 1 88 13 16 20 13 0 67 0 1 168 0 1009 122 0 1 761 16 6 44 5 1 7 0 4 6 1 0 628 1 2 160 3 2 82 1 2 383 11 7 339 1 2 29 1 0 4 chain 41554 chr1 248956422 + 102231031 102231475 L1HS 6032 + 5585 6029 33651 444 chain 87136 chr1 248956422 + 102264188 102265223 L1PA6 6164 + 5127 6160 20207 662 1 2 81 0 1 227 4 0 60 chain 31032 chr1 248956422 + 102286018 102286473 L1MA1 4479 + 221 680 41101 7 1 0 52 32 33 21 0 2 265 8 10 69 chain 155951 chr1 248956422 + 102342552 102344265 L1PA3long 6157 + 4444 6156 12007 727 1 0 985 chain 307250 chr1 248956422 + 102355764 102360119 L1PA8 5853 + 1756 5853 6675 50 1 8 99 4 134 498 99 14 150 0 2 28 0 7 130 2 1 30 3 1 400 18 22 57 4 0 616 0 1 6 1 0 37 7 11 71 0 7 198 0 1 36 5 6 632 321 0 72 2 1 17 0 4 461 1 0 44 2 0 71 1 0 14 4 3 28 1 0 16 6 1 19 4 3 12 1 2 76 chain 2683 chr1 248956422 + 102377893 102377995 L1MD2 1676 + 1336 1440 102429 25 58 60 19 chain 94809 chr1 248956422 + 102385624 102386688 L1P1 4361 + 3116 4179 18934 1035 1 0 28 chain 141365 chr1 248956422 + 102425611 102427240 L1PA5 6144 + 4510 6142 12993 784 7 8 52 0 1 157 0 1 629 chain 539963 chr1 248956422 + 102442083 102448228 L1PA4 6152 + 1 6152 1343 574 9 13 132 16 15 1718 2 0 234 0 5 3282 6 5 21 1 2 150 chain 62289 chr1 248956422 + 102457289 102457992 L1PA5 6144 + 5441 6144 25796 703 chain 81396 chr1 248956422 + 102481722 102482651 L1PA5 6144 + 5205 6139 21357 89 0 5 840 chain 69868 chr1 248956422 + 102507318 102508127 L1PA5 6144 + 2192 3002 24025 121 2 1 442 3 5 241 chain 4344 chr1 248956422 + 102515172 102515237 L1PA8 5853 + 5696 5760 89214 43 3 2 19 chain 7729 chr1 248956422 + 102515238 102515330 L1PA8 5853 + 5760 5852 75533 92 chain 82613 chr1 248956422 + 102534049 102534988 L1PA4 6152 + 4942 5880 21100 68 1 0 386 8 7 414 0 1 62 chain 18373 chr1 248956422 + 102535443 102535687 AluSc 308 + 53 296 58271 83 8 5 7 0 3 106 1 0 39 chain 27143 chr1 248956422 + 102552376 102552705 L1PA7 6471 + 5041 5375 46060 11 0 5 139 1 0 106 0 1 72 chain 64642 chr1 248956422 + 102553790 102554611 MER11A 1151 + 0 1144 25286 208 7 271 79 0 2 274 1 59 192 1 0 59 chain 3543 chr1 248956422 + 102604723 102604761 L1PA6 6164 + 5959 5997 94924 38 chain 161137 chr1 248956422 + 102642663 102644460 L1PA3long 6157 + 4356 6157 11672 192 0 3 596 0 1 159 1 0 707 0 1 142 chain 96790 chr1 248956422 + 102701962 102703049 L1PA3long 6157 + 5058 6144 18680 249 1 0 837 chain 77783 chr1 248956422 + 102770418 102771757 L1PB1 5432 + 4283 5420 22148 35 0 2 303 3 0 109 0 1 65 1 0 107 21 0 90 2 1 38 12 13 5 1 0 41 0 1 4 7 7 9 161 0 20 1 0 13 16 11 9 2 0 52 1 0 18 1 0 44 1 0 15 1 0 4 11 10 17 8 5 14 2 0 18 0 1 5 1 0 21 1 0 29 chain 147399 chr1 248956422 + 102779883 102781542 L1PA3long 6157 + 4496 6157 12518 1408 0 1 104 0 1 147 chain 38106 chr1 248956422 + 102807895 102808332 L1PA4 6152 + 2205 2642 35984 437 chain 25508 chr1 248956422 + 102826053 102826489 LTR10A 586 + 27 517 48471 32 0 8 7 6 7 20 3 24 14 1 9 36 36 37 60 1 2 113 19 33 88 chain 520686 chr1 248956422 + 102826503 102832654 L1PA5 6144 + 0 6141 2240 120 0 14 15 16 2 170 0 3 404 0 1 1210 12 11 496 2 0 346 8 0 372 3 0 11 1 0 1045 0 1 1065 1 0 513 0 1 181 0 5 7 6 1 147 chain 33206 chr1 248956422 + 102833288 102833695 LTR3 431 + 15 422 39343 407 chain 2657 chr1 248956422 + 102854408 102854495 LTR12C 1709 + 651 698 102684 19 46 6 22 chain 21923 chr1 248956422 + 102859672 102859918 L1PA5 6144 + 5645 5891 53940 246 chain 20607 chr1 248956422 + 102859931 102860165 L1PA5 6144 + 5903 6137 55624 151 0 1 70 1 0 12 chain 81236 chr1 248956422 + 102904206 102905111 L1PA4 6152 + 4972 5879 21381 704 0 2 70 3 0 5 0 3 123 chain 46422 chr1 248956422 + 102945821 102946329 L1PA3long 6157 + 5641 6149 30871 508 chain 37667 chr1 248956422 + 102986120 102986545 L1PA4 6152 + 5697 6139 36292 120 0 1 220 0 1 75 0 15 10 chain 4990 chr1 248956422 + 103020934 103020988 L1PA3long 6157 + 4804 4858 85706 54 chain 10410 chr1 248956422 + 103055636 103055821 MER30 238 + 1 238 69594 16 13 14 14 0 1 44 12 64 43 2 0 41 chain 125223 chr1 248956422 + 103133243 103134665 L1PA4 6152 + 3933 5356 14663 532 0 1 890 chain 41947 chr1 248956422 + 103186322 103187058 L1PREC2 3366 + 139 869 33390 24 61 52 16 2 1 13 1 0 9 1 0 4 1 0 25 4 3 119 7 6 57 1 0 12 52 61 164 0 1 42 0 1 4 1 0 116 chain 105016 chr1 248956422 + 103235695 103237129 THE1A-int 1579 + 0 1567 17686 241 0 3 142 9 11 45 3 0 19 1 0 180 0 1 53 11 136 20 3 0 5 6 10 27 1 0 14 6 8 194 11 15 443 chain 23826 chr1 248956422 + 103237141 103237467 THE1A 353 + 0 330 51060 20 14 16 28 0 2 44 1 0 92 1 0 90 0 2 36 chain 151728 chr1 248956422 + 103263345 103265096 L1PA5 6144 + 4348 6131 12242 309 1 2 672 0 31 424 0 1 245 2 1 98 chain 439054 chr1 248956422 + 103267222 103272738 HERVL-int 5654 + 1 5646 4586 199 0 2 155 15 14 567 1 2 4 1 0 174 1 0 291 8 17 96 1 2 79 0 4 88 0 1 179 7 8 17 1 0 43 0 1 57 0 8 320 0 2 843 5 4 38 11 20 109 5 0 225 5 0 24 2 0 479 0 1 939 13 117 97 1 0 55 17 20 344 chain 29323 chr1 248956422 + 103272745 103273141 MLT2A1 477 + 0 392 42841 170 4 1 8 0 1 23 1 2 153 0 1 26 4 0 7 chain 14792 chr1 248956422 + 103289870 103290055 MSTA 426 + 242 426 62540 67 1 0 117 chain 69680 chr1 248956422 + 103311197 103312033 L1PA7 6471 + 5634 6470 24077 593 1 0 80 11 12 151 chain 115270 chr1 248956422 + 103355357 103356611 L1PA2 6032 + 4778 6032 16348 1254 chain 6637 chr1 248956422 + 103370957 103371287 MER21A 919 + 25 485 78853 35 23 26 19 30 36 5 1 0 11 1 0 13 151 274 41 chain 536655 chr1 248956422 + 103377216 103383340 L1PA4 6152 + 6 6151 1526 677 0 1 87 0 3 106 0 1 355 0 1 3216 0 12 39 0 1 159 4 5 881 1 2 340 1 0 86 1 2 171 chain 84207 chr1 248956422 + 103402559 103403644 MER11B 1079 + 0 1079 20762 264 3 0 470 6 7 29 11 5 281 1 3 20 chain 52391 chr1 248956422 + 103445350 103446153 L1PA11 4918 + 3806 4578 28758 83 40 20 359 4 8 55 3 1 63 1 0 80 2 0 13 1 0 10 24 22 10 13 9 15 1 0 13 2 0 11 chain 40243 chr1 248956422 + 103465588 103466356 L1PB1 5432 + 4700 5420 34484 102 1 2 25 0 1 40 0 9 204 67 35 20 1 0 8 1 0 12 5 1 8 2 0 46 4 8 16 6 5 38 1 0 13 28 15 19 32 27 16 1 0 17 10 9 8 1 0 16 chain 177934 chr1 248956422 + 103483369 103485419 L1PA4 6152 + 2043 4096 10682 446 0 1 692 0 1 250 2 3 73 1 0 202 10 11 374 chain 181711 chr1 248956422 + 103485419 103487466 L1PA4 6152 + 4103 6152 10512 683 0 1 1187 3 7 22 8 0 138 0 5 6 chain 33648 chr1 248956422 + 103496041 103496547 L1PA15 4387 + 3550 4045 38963 8 1 0 173 22 20 62 2 0 16 4 0 24 1 2 33 2 0 44 1 0 113 chain 108518 chr1 248956422 + 103511167 103512560 L1P3 4156 + 2726 4131 17250 168 0 3 29 0 1 20 4 5 89 1 2 50 0 4 385 0 1 11 1 0 47 0 4 146 1 0 141 1 2 261 0 1 11 2 0 7 2 1 16 chain 58375 chr1 248956422 + 103678014 103678669 L1PA3long 6157 + 5502 6157 26842 517 2 1 80 0 1 56 chain 192770 chr1 248956422 + 103836540 103838926 L1PA6 6164 + 3738 6156 9979 62 4 5 552 0 8 314 0 1 292 5 6 64 1 10 244 0 4 18 0 4 357 7 0 234 0 1 5 0 3 80 0 7 147 chain 8056 chr1 248956422 + 103886103 103886229 L1PREC2 3366 + 233 352 74741 11 2 1 12 3 1 43 4 0 51 chain 3548 chr1 248956422 + 103912837 103912879 MLT1E2 623 + 114 156 94870 42 chain 303459 chr1 248956422 + 103922000 103925398 L1HS 6032 + 0 3922 6756 96 0 524 326 2 1 1615 1 2 1358 chain 5600 chr1 248956422 + 103976575 103976705 MER70A 477 + 346 477 82808 40 51 52 39 chain 65448 chr1 248956422 + 104035972 104036669 L1HS 6032 + 5334 6031 25081 697 chain 182744 chr1 248956422 + 104113628 104115679 L1PA4 6152 + 4087 6143 10452 264 0 4 280 1 0 24 1 0 48 0 1 444 0 1 569 0 1 420 chain 8778 chr1 248956422 + 104140213 104140321 MER50 708 + 600 708 73041 108 chain 5322 chr1 248956422 + 104172911 104172974 LTR12C 1709 + 650 713 84089 63 chain 39785 chr1 248956422 + 104176871 104177730 MER41A 554 + 1 554 34832 86 3 7 182 7 8 82 317 0 29 7 13 146 chain 30042 chr1 248956422 + 104181474 104181912 MER4A1 472 + 0 461 42010 72 0 1 143 34 55 25 5 6 159 chain 24917 chr1 248956422 + 104271085 104271655 L1PB1 5432 + 4916 5422 49403 103 2 0 5 0 2 77 41 11 15 51 40 51 2 1 15 1 0 41 89 71 24 1 0 21 1 0 11 1 0 18 chain 12962 chr1 248956422 + 104321288 104321566 L1PB1 5432 + 5168 5423 65162 52 22 20 41 40 27 16 2 0 8 1 0 14 2 0 24 1 0 21 1 0 13 1 0 19 chain 100184 chr1 248956422 + 104340861 104342116 L1PA7 6471 + 5195 6456 18282 347 2 1 78 0 3 6 0 1 62 0 1 4 2 1 231 1 2 349 0 1 38 4 5 131 chain 368699 chr1 248956422 + 104372447 104376678 L1PA4 6152 + 1905 6152 5683 5 3 0 268 1 0 68 0 2 127 0 1 221 0 1 579 0 1 1246 0 1 40 1 2 1049 0 1 380 0 6 233 0 6 10 chain 11547 chr1 248956422 + 104395254 104395393 L1P1 4361 + 1465 1622 67669 59 1 19 79 chain 37009 chr1 248956422 + 104425759 104426276 MLT2A2 560 + 0 560 36729 196 28 35 105 11 36 34 0 11 143 chain 57078 chr1 248956422 + 104429232 104429946 L1PA8A 6298 + 5558 6286 27245 12 0 2 232 0 9 275 0 1 88 13 15 94 chain 54947 chr1 248956422 + 104488616 104489266 LTR6A 649 + 0 649 27894 435 1 0 214 chain 29116 chr1 248956422 + 104509602 104509914 AluYa5 310 + 0 310 43165 132 2 0 178 chain 37475 chr1 248956422 + 104534382 104534933 MLT2A2 560 + 0 560 36420 97 0 1 85 70 67 156 0 11 143 chain 139597 chr1 248956422 + 104549216 104551172 L1PA8A 6298 + 4313 6283 13127 96 22 25 107 0 4 4 0 1 180 4 5 168 13 23 31 38 38 136 0 7 107 2 0 68 3 4 136 0 21 13 21 0 93 1 0 529 22 13 67 1 0 94 chain 405514 chr1 248956422 + 104556414 104561793 HERVL-int 5654 + 1 5654 5085 30 4 5 295 23 18 111 0 1 235 0 1 266 7 8 30 0 1 38 5 11 28 0 4 30 6 5 68 11 8 229 14 8 6 0 6 263 10 86 113 0 2 99 3 2 288 0 2 52 0 179 238 20 23 26 24 0 11 8 18 209 0 1 517 10 15 498 7 2 223 0 4 442 0 6 264 12 29 143 7 11 16 22 7 40 8 11 74 0 1 296 chain 396992 chr1 248956422 + 104586074 104612487 L1PA7 6471 + 1 6462 5199 403 3 0 507 10 11 345 11 12 70 13 5 279 4 22 189 20765 780 17 9 0 455 0 4 238 2 0 7 0 2 137 1 2 11 0 1 51 6 10 277 1 0 320 5 18 189 0 1 584 2 1 69 0 1 10 15 14 160 1 0 9 6 7 27 0 4 55 0 5 31 0 1 155 4 1 123 0 3 334 0 4 169 1 0 188 1 2 133 3 0 8 chain 242200 chr1 248956422 + 104587918 104591072 L1PA7 6471 + 3244 6465 8421 165 6 9 43 1 10 31 0 1 24 17 4 243 1 12 32 4 3 13 3 4 87 0 1 194 13 57 359 0 5 423 0 1 313 1 2 25 0 5 31 0 1 166 0 2 196 1 0 753 3 0 6 chain 60530 chr1 248956422 + 104599374 104600194 HERVH-int 3825 + 2970 3824 26225 45 1 0 32 9 8 37 0 3 333 34 18 288 0 48 12 5 6 24 chain 444271 chr1 248956422 + 104693488 104699277 L1PA6 6164 + 601 6156 4489 362 2 1 139 1 15 314 3 4 10 1 0 460 2 0 207 0 3 97 1 3 22 0 1 78 11 8 357 1 2 17 0 3 258 0 1 54 3 4 74 304 51 44 0 2 257 1 4 5 3 0 29 0 1 214 0 1 38 1 2 620 0 8 278 9 2 21 2 0 3 7 0 4 0 1 213 0 1 968 0 1 45 1 0 248 chain 7692 chr1 248956422 + 104795585 104795798 MLT1A0 366 + 88 301 75647 52 36 38 24 56 54 45 chain 5084 chr1 248956422 + 104814461 104814581 L1MC1 2226 + 1932 2047 85228 27 47 42 46 chain 9098 chr1 248956422 + 104816832 104816931 L1PA7 6471 + 6368 6467 72348 99 chain 145853 chr1 248956422 + 104820216 104821822 L1PA3long 6157 + 2464 4069 12626 233 1 0 1372 chain 3535 chr1 248956422 + 104823726 104823963 MER20B 722 + 414 649 94981 27 99 98 28 64 63 19 chain 393263 chr1 248956422 + 104832804 104837581 L1PA6 6164 + 1360 6145 5261 92 3 0 256 0 7 243 14 14 210 1 0 150 0 2 601 1 2 273 0 1 83 6 8 227 5 8 88 0 1 494 13 11 118 0 1 393 6 0 1360 26 28 114 chain 11506 chr1 248956422 + 104865847 104865994 L1P3 4156 + 3971 4116 67735 136 2 0 9 chain 348345 chr1 248956422 + 104917044 104921323 L1PA7 6471 + 1712 6466 5928 11 6 1 796 0 2 109 0 2 760 0 1 103 1 0 347 1 13 22 0 429 211 0 2 462 0 3 15 0 1 87 0 1 359 0 1 28 22 4 132 0 3 83 3 15 82 1 2 301 1 30 336 chain 34869 chr1 248956422 + 104969687 104970148 LTR71A 459 + 0 459 38111 201 17 18 74 1 0 160 2 0 6 chain 44699 chr1 248956422 + 105108991 105109615 LTR12 884 + 0 884 31743 25 9 8 22 0 107 193 0 22 78 14 13 209 13 146 61 chain 35713 chr1 248956422 + 105115385 105115989 LTR12 884 + 0 869 37595 24 1 0 31 0 41 176 0 41 20 1 48 64 1 2 13 9 8 93 99 0 33 1 237 38 chain 67729 chr1 248956422 + 105167599 105168454 L1PA7 6471 + 5513 6375 24514 100 9 8 677 18 26 51 chain 206601 chr1 248956422 + 105214150 105216398 L1PA2 6032 + 3768 6014 9484 1411 1 0 82 2 1 752 chain 7590 chr1 248956422 + 105228545 105228649 THE1B-int 1605 + 1501 1605 75888 29 1 0 4 1 2 69 chain 27859 chr1 248956422 + 105295140 105295489 L1PA7 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4341 25267 724 1 0 23 2 1 12 chain 14594 chr1 248956422 + 105729855 105730027 L1PA2 6032 + 5706 5873 62807 160 5 0 7 chain 13923 chr1 248956422 + 105730027 105730179 L1PA2 6032 + 5879 6031 63709 152 chain 28220 chr1 248956422 + 105734054 105734361 AluYa5 310 + 0 306 44536 97 1 0 209 chain 66003 chr1 248956422 + 105748254 105749059 L1PA8 5853 + 3653 4465 24959 43 0 3 243 0 5 387 1 0 131 chain 4429 chr1 248956422 + 105753272 105753347 MLT2A1 477 + 417 477 88746 10 14 0 30 1 0 20 chain 424438 chr1 248956422 + 105753347 105759317 HERVL-int 5654 + 0 5654 4820 698 9 10 163 0 5 296 3 4 23 0 9 9 362 0 194 1 13 45 47 44 96 0 2 194 1 0 4 5 2 22 4 5 835 2 0 5 9 11 177 1 0 4 4 5 412 1 0 5 1 2 29 8 0 232 0 1 410 0 2 125 0 1 6 0 1 573 4 5 430 1 17 33 17 24 41 1 0 182 0 2 246 chain 16268 chr1 248956422 + 105780443 105780740 THE1C 375 + 65 374 60653 23 24 30 49 30 31 87 4 9 42 0 1 12 1 0 25 chain 19063 chr1 248956422 + 105787442 105787649 L1PA3long 6157 + 4901 5108 57479 207 chain 68273 chr1 248956422 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19 chain 157402 chr1 248956422 + 106114162 106116168 L1PA7 6471 + 3810 6467 11921 19 15 0 63 0 1 778 0 4 44 0 1 88 2 0 103 10 687 24 0 2 116 24 6 391 2 1 49 0 2 278 chain 3171 chr1 248956422 + 106116839 106116874 MER41-int 2638 + 116 151 98200 35 chain 3252 chr1 248956422 + 106159068 106159103 MER11A 1151 + 0 35 97462 35 chain 19654 chr1 248956422 + 106159607 106160005 HERVK11-int 2540 + 1071 1422 56852 49 20 19 34 31 27 15 10 0 11 1 0 27 12 1 36 21 1 131 chain 389040 chr1 248956422 + 106163919 106168445 L1PA4 6152 + 759 5187 5332 1093 0 1 1408 0 15 741 114 0 1170 chain 128589 chr1 248956422 + 106171740 106173381 L1PA7 6471 + 4680 6351 14206 50 0 1 222 1 2 119 29 6 113 0 22 353 0 1 45 0 3 235 13 15 92 1 15 23 1 9 125 0 1 219 chain 27782 chr1 248956422 + 106183743 106184096 THE1A 353 + 0 353 45206 24 0 1 84 2 1 243 chain 117887 chr1 248956422 + 106184096 106185672 THE1A-int 1579 + 0 1574 15901 113 0 3 156 1 0 158 7 8 36 20 27 219 0 1 71 2 1 147 0 1 257 7 8 33 10 0 128 0 4 162 8 0 41 chain 27134 chr1 248956422 + 106185677 106186029 THE1A 353 + 0 353 46075 25 1 2 83 1 0 215 0 1 27 chain 33473 chr1 248956422 + 106188698 106189155 L1PA8A 6298 + 5210 5856 39112 9 1 0 55 2 180 30 1 0 165 5 18 189 chain 52609 chr1 248956422 + 106213272 106213878 L1PA4 6152 + 5536 6143 28698 281 0 1 325 chain 79777 chr1 248956422 + 106240544 106241494 L1PA4 6152 + 4079 5110 21670 124 6 7 751 34 114 35 chain 21524 chr1 248956422 + 106241494 106241733 L1PA4 6152 + 5111 5350 54475 239 chain 11310 chr1 248956422 + 106275863 106276019 Tigger3a 397 + 159 316 68071 140 5 6 11 chain 22526 chr1 248956422 + 106299315 106299573 L1PA4 6152 + 5884 6143 53076 13 0 1 245 chain 74055 chr1 248956422 + 106314124 106314990 L1P2 5180 + 1731 2598 23077 5 0 2 366 1 0 494 chain 503374 chr1 248956422 + 106329424 106335358 L1PA5 6144 + 14 5969 3017 460 6 5 1098 11 12 203 8 9 216 0 1 559 0 2 452 0 1 67 1 2 75 2 1 81 0 2 60 0 6 1703 0 8 932 chain 51685 chr1 248956422 + 106401504 106402581 L1PB1 5432 + 4535 5403 28968 25 0 3 4 1 0 50 34 23 68 1 0 59 1 9 37 1 2 152 1 0 133 178 5 12 3 0 21 1 0 9 16 11 11 2 0 51 2 1 10 7 6 32 1 0 11 1 0 16 67 50 24 1 0 21 1 0 12 chain 134444 chr1 248956422 + 106411819 106413351 SVA_D 2077 + 18 2066 13601 576 0 40 53 0 40 151 0 83 75 0 2 65 1 352 611 chain 20613 chr1 248956422 + 106415873 106416171 AluSc 308 + 0 296 55615 9 1 0 226 32 31 30 chain 58707 chr1 248956422 + 106425637 106426323 L1HS 6032 + 5353 6032 26758 149 8 17 135 14 0 373 2 0 5 chain 17145 chr1 248956422 + 106426418 106426615 L1PA5 6144 + 5761 5958 59642 50 0 1 79 1 0 67 chain 15420 chr1 248956422 + 106426615 106426799 L1PA5 6144 + 5959 6143 61757 184 chain 31373 chr1 248956422 + 106427226 106427648 THE1B-int 1605 + 1188 1605 40834 100 14 11 194 0 1 45 3 0 66 chain 4033 chr1 248956422 + 106459760 106460015 L1MA8 2339 + 2049 2264 91213 26 185 146 36 1 0 7 chain 33630 chr1 248956422 + 106499582 106499999 L1PA8 5853 + 5254 5678 38978 145 0 9 77 0 1 78 1 0 44 2 0 70 chain 76803 chr1 248956422 + 106559764 106560768 L1PA7 6471 + 5455 6470 22374 98 10 1 38 5 6 23 1 0 5 0 1 145 4 16 487 0 1 27 4 5 7 0 1 138 0 4 12 chain 4209 chr1 248956422 + 106581679 106581796 L1PREC2 3366 + 2932 3030 90068 19 37 20 35 6 4 20 chain 34616 chr1 248956422 + 106667904 106668469 L1MA1 4479 + 3615 4162 38274 99 1 0 21 1 0 4 1 0 16 1 0 66 6 5 13 12 10 10 1 0 88 1 0 5 3 0 22 1 0 104 1 0 26 10 8 30 2 1 9 1 0 10 chain 23211 chr1 248956422 + 106698008 106698321 THE1A 353 + 26 345 52066 49 3 10 24 2 1 83 0 1 65 1 2 52 2 0 32 chain 3664 chr1 248956422 + 106738271 106738318 L1MB8 1703 + 1528 1577 93879 42 0 2 5 chain 3670 chr1 248956422 + 106841486 106841538 L1MB3 1562 + 1252 1516 93818 41 0 212 11 chain 25192 chr1 248956422 + 106847019 106847439 L1MA1 4479 + 3714 4120 48959 25 28 25 65 2 1 15 2 0 14 1 0 88 9 5 116 11 10 29 2 0 13 chain 519708 chr1 248956422 + 106852955 106859362 L1PA7 6471 + 3 6461 2287 145 0 6 6 15 9 242 0 1 421 7 9 920 0 4 291 0 1 26 12 16 48 2 30 189 1 2 263 0 2 255 0 4 414 2 0 87 18 20 186 0 3 5 1 0 4 3 1 223 2 0 177 0 1 300 1 0 311 1 0 4 1 0 42 0 4 818 1 0 130 0 1 181 0 3 159 10 11 329 0 7 7 7 0 140 chain 10685 chr1 248956422 + 106860992 106861141 L1PA8 5853 + 5706 5853 69071 30 7 6 18 1 0 93 chain 7776 chr1 248956422 + 106864850 106865045 MLT1A 405 + 60 279 75423 54 15 16 22 0 3 5 1 0 14 55 76 29 chain 59209 chr1 248956422 + 106877454 106878875 HSMAR1 1287 + 24 1256 26604 100 4 1 77 12 13 131 0 3 34 1 2 148 617 426 297 chain 22983 chr1 248956422 + 106923904 106924174 L1PA4 6152 + 5866 6138 52388 219 0 2 51 chain 190587 chr1 248956422 + 106989716 106992474 L1PB2 3958 + 1079 3838 10085 178 1 3 262 0 1 4 1 0 25 1 4 18 5 4 18 7 8 43 0 3 40 0 4 196 1 9 7 9 0 328 0 1 56 11 14 63 5 7 105 5 1 36 6 9 44 7 6 98 17 18 14 0 1 6 6 8 129 13 4 68 1 0 49 0 1 166 1 3 166 2 0 19 1 2 31 0 3 16 2 0 61 2 0 12 2 0 87 1 0 25 13 5 46 7 6 61 2 1 71 2 0 21 0 6 58 chain 11527 chr1 248956422 + 107022610 107022753 L1PA7 6471 + 5948 6091 67702 143 chain 32541 chr1 248956422 + 107022754 107023130 L1PA7 6471 + 6093 6467 39919 366 2 0 8 chain 122812 chr1 248956422 + 107039039 107040611 THE1B-int 1605 + 0 1599 15055 25 4 3 353 8 9 40 0 25 24 8 8 583 0 1 55 0 1 472 chain 134101 chr1 248956422 + 107044571 107046171 LTR12C 1709 + 0 1709 13643 93 1 0 193 15 1 16 0 1 218 7 8 189 0 118 157 0 2 120 4 2 106 0 4 481 chain 39711 chr1 248956422 + 107074241 107074915 L1PB1 5432 + 4782 5423 34884 312 24 20 19 1 0 11 1 0 14 5 1 9 2 0 52 2 1 14 10 9 38 1 0 11 24 15 18 3 1 5 1 0 14 2 0 24 1 0 22 2 1 11 1 0 10 1 0 9 chain 23859 chr1 248956422 + 107093468 107093825 THE1B 368 + 0 368 51012 169 1 0 25 45 50 83 0 7 34 chain 115748 chr1 248956422 + 107236936 107238507 THE1B-int 1605 + 0 1605 16281 12 4 6 114 0 1 290 0 1 5 8 32 198 18 17 68 12 3 8 0 9 16 18 14 473 0 1 126 4 3 54 0 11 143 chain 17405 chr1 248956422 + 107238507 107238863 THE1B 368 + 0 368 59343 41 81 96 35 4 3 19 3 5 95 1 0 6 10 7 61 chain 6781 chr1 248956422 + 107250487 107250561 L1PA7 6471 + 6387 6461 78377 74 chain 10166 chr1 248956422 + 107398188 107398297 L1PA2 6032 + 5919 6028 70072 109 chain 27549 chr1 248956422 + 107509491 107509865 THE1C 375 + 0 375 45513 138 1 5 36 0 2 5 0 1 7 10 4 177 chain 163768 chr1 248956422 + 107568514 107570449 HERVL-int 5654 + 2879 4871 11498 201 0 3 417 0 1 123 0 1 56 0 1 109 1 34 119 0 4 339 4 0 256 0 18 310 chain 117523 chr1 248956422 + 107583266 107584569 L1PA3long 6157 + 4002 5308 15970 352 0 4 233 1 0 285 2 1 236 0 1 194 chain 144598 chr1 248956422 + 107634005 107635622 L1PA4 6152 + 4523 6143 12720 833 0 3 784 chain 44444 chr1 248956422 + 107642070 107642611 MER41A 554 + 0 554 31860 206 0 13 335 chain 42558 chr1 248956422 + 107651999 107652539 MER41A 554 + 13 554 33028 368 12 11 4 0 1 86 0 1 70 chain 11326 chr1 248956422 + 107712254 107712462 MER30 238 + 0 238 68041 17 19 41 41 6 0 7 8 0 7 2 25 50 1 0 50 chain 184701 chr1 248956422 + 107718039 107720216 L1PA6 6164 + 3985 6161 10354 662 1 2 727 4 0 129 1 4 484 25 24 144 chain 518616 chr1 248956422 + 107732243 107738361 L1PA6 6164 + 0 6162 2334 132 0 1 890 1 0 629 10 41 434 0 1 47 0 1 371 0 3 639 0 1 43 0 1 335 0 2 18 0 1 101 3 0 671 0 4 956 0 1 491 1 0 60 1 2 123 17 18 145 chain 33035 chr1 248956422 + 107801416 107801847 MER57A1 433 + 0 433 39490 245 0 1 34 7 8 145 chain 23370 chr1 248956422 + 107830407 107830730 MER83C 372 + 0 335 51821 107 17 29 39 1 0 155 0 1 4 chain 515443 chr1 248956422 + 107844025 107850720 L1PA7 6471 + 3 6459 2496 165 3 4 442 3 20 139 1 0 408 0 9 360 6 7 311 1 2 5 1 0 133 0 1 169 0 1 211 0 33 244 9 1 76 0 3 240 1 0 47 0 1 468 1 0 46 0 4 389 0 1 13 0 2 8 0 5 37 1 0 68 312 0 128 6 0 57 0 8 394 1 3 244 0 1 4 1 0 70 14 8 312 0 5 163 0 5 142 5 1 130 0 3 121 1 0 339 1 0 4 0 1 142 0 8 6 8 0 84 chain 8332 chr1 248956422 + 107851102 107851193 AluYk12 309 + 212 303 74081 91 chain 33707 chr1 248956422 + 107929768 107930326 L1MA3 4352 + 3811 4352 38922 215 1 0 67 61 44 38 0 4 11 0 3 67 9 7 15 1 0 6 1 0 26 2 1 13 1 0 24 chain 4689 chr1 248956422 + 107932898 107933027 MLT1D 503 + 375 503 87334 19 59 58 51 chain 26494 chr1 248956422 + 108005093 108005439 THE1C 375 + 0 347 46991 173 8 9 165 chain 57029 chr1 248956422 + 108062524 108063441 L1PA15 4387 + 3465 4366 27258 13 0 7 118 0 1 209 8 6 69 2 0 44 1 0 116 0 1 51 22 20 11 1 0 54 1 0 18 19 14 42 61 56 12 13 8 21 1 0 10 chain 7731 chr1 248956422 + 108100270 108100366 L1PA16 3655 + 3465 3561 75528 96 chain 20295 chr1 248956422 + 108110895 108111169 AluSc5 308 + 28 301 56021 113 3 0 6 0 3 107 10 9 35 chain 186527 chr1 248956422 + 108263414 108266047 L1PA3long 6157 + 1511 6153 10273 409 0 1 4 2 1 79 75 85 6 1 0 77 2 1 65 0 19 7 39 20 32 2 0 9 3 2 347 0 1 88 2 1 284 1 0 4 0 1 81 8 2011 277 4 5 725 chain 152693 chr1 248956422 + 108287721 108289537 L1PA7 6471 + 3397 5215 12191 125 0 1 1051 1 0 4 0 1 599 4 5 32 chain 5220 chr1 248956422 + 108336883 108337034 MER3 215 + 12 169 84583 42 76 82 33 chain 53838 chr1 248956422 + 108386412 108387423 L1M1 2793 + 661 1646 28273 41 92 70 30 1 0 27 3 1 9 89 85 49 7 9 21 1 0 15 1 4 160 1 0 22 0 4 54 1 0 13 31 17 6 1 0 25 0 2 17 4 9 177 0 5 113 chain 124901 chr1 248956422 + 108395727 108397297 THE1A-int 1579 + 1 1574 14726 451 0 1 886 12 12 134 9 11 78 chain 96093 chr1 248956422 + 108406655 108407877 L1PA7 6471 + 5210 6462 18765 65 0 10 336 0 3 187 0 2 155 0 33 323 0 2 6 2 0 25 26 8 97 chain 5256 chr1 248956422 + 108412018 108412114 L1MEf 1413 + 920 1014 84408 21 3 0 12 12 13 48 chain 6392 chr1 248956422 + 108442247 108442343 L1P4 1494 + 109 203 79698 11 6 5 20 1 0 58 chain 9806 chr1 248956422 + 108473289 108473394 LTR7 482 + 377 482 70807 105 chain 284444 chr1 248956422 + 108473396 108476977 HERVH-int 3825 + 0 3825 7304 212 0 11 110 2 1 196 1 0 11 1 0 4 0 1 24 2 1 9 1 0 9 4 0 14 51 1 15 0 37 42 2 1 80 0 3 1 4 0 291 0 2 5 2 0 604 6 33 297 0 10 46 3 5 61 0 3 501 0 1 428 9 11 39 8 218 265 1 2 220 chain 152089 chr1 248956422 + 108486478 108488317 L1P1 4361 + 2 1835 12219 572 1 0 128 12 5 962 0 2 164 chain 391262 chr1 248956422 + 108490892 108495190 L1PA3long 6157 + 1858 6157 5301 32 0 2 1492 1 0 2600 0 2 88 2 0 83 chain 12160 chr1 248956422 + 108495250 108495437 MER11A 1151 + 967 1151 66549 37 10 9 72 7 6 21 1 0 39 chain 25172 chr1 248956422 + 108501814 108502173 L1PA8 5853 + 5501 5853 49001 61 1 0 46 2 0 70 2 1 14 9 8 39 2 1 19 2 1 92 chain 79315 chr1 248956422 + 108517444 108518412 LTR5_Hs 974 + 0 974 21776 216 1 0 72 0 1 448 0 1 79 17 24 30 2 0 103 chain 82336 chr1 248956422 + 108539962 108541009 MER11C 1089 + 0 1063 21168 246 0 9 58 0 4 69 1 0 205 6 4 76 0 1 18 0 4 5 1 0 38 0 1 127 0 1 197 chain 492379 chr1 248956422 + 108542343 108548024 L1PA6 6164 + 483 6160 3360 449 1 0 321 1 0 743 0 1 328 0 1 74 0 1 128 0 1 659 0 1 26 2 1 2930 1 0 5 5 0 8 chain 93976 chr1 248956422 + 108578637 108579660 L1HS 6032 + 1562 2585 19041 1023 chain 7486 chr1 248956422 + 108623518 108623651 L1MA3 4352 + 4204 4332 76161 16 1 0 7 1 3 30 2 0 22 2 1 5 1 0 26 1 0 14 1 0 4 chain 23274 chr1 248956422 + 108630293 108630585 L1PA4 6152 + 5859 6151 51967 134 11 12 8 1 0 138 chain 32473 chr1 248956422 + 108641428 108642371 L1MA3 4352 + 3752 4349 39964 91 4 0 209 1 0 40 81 74 14 1 0 13 0 11 2 305 0 41 48 12 23 1 0 5 2 1 29 14 13 19 chain 6586 chr1 248956422 + 108664941 108665022 MLT1B 390 + 285 366 79028 81 chain 7650 chr1 248956422 + 108666792 108666888 MSTB1 431 + 335 431 75748 96 chain 121111 chr1 248956422 + 108667293 108668711 LTR12C 1709 + 0 1698 15331 240 0 1 420 1 280 171 1 0 8 2 0 104 0 4 393 5 4 73 chain 10069 chr1 248956422 + 108669831 108669998 Tigger4b 360 + 0 183 70260 22 1 0 18 23 40 103 chain 146860 chr1 248956422 + 108675098 108676716 SVA_F 1814 + 0 1808 12550 521 0 40 62 0 40 225 1 0 10 0 64 165 0 50 619 3 0 12 chain 8131 chr1 248956422 + 108676720 108676812 LTR2B 499 + 365 457 74558 92 chain 10225 chr1 248956422 + 108679515 108679660 MER2B 336 + 181 336 69954 28 4 15 67 1 0 45 chain 38629 chr1 248956422 + 108681696 108682183 LTR10D 510 + 0 510 35620 49 0 24 6 5 0 146 14 15 22 0 3 245 chain 15860 chr1 248956422 + 108787342 108787534 MER107 203 + 0 203 61217 51 0 6 99 0 5 42 chain 12871 chr1 248956422 + 108789253 108789432 MER30 238 + 37 238 65304 70 4 0 10 3 23 12 0 6 80 chain 9730 chr1 248956422 + 108868050 108868175 MER85 139 + 4 139 70982 85 0 10 40 chain 18756 chr1 248956422 + 108965748 108966409 MER4D1 891 + 9 879 57837 76 399 609 41 0 1 16 2 0 127 chain 13096 chr1 248956422 + 109043714 109044039 L1MA4 2864 + 2518 2804 64934 123 33 30 17 97 63 16 2 0 37 chain 135199 chr1 248956422 + 109052677 109054199 SVA_B 1603 + 49 1603 13524 11 1 0 407 0 2 451 4 0 48 0 36 439 1 0 160 chain 9698 chr1 248956422 + 109056763 109056914 MER1A 529 + 385 529 71052 73 22 15 56 chain 82153 chr1 248956422 + 109073391 109074432 SVA_B 1603 + 0 1443 21211 21 14 23 22 0 5 55 3 35 82 0 1 198 0 116 58 1 0 133 4 1 9 5 45 19 0 3 7 3 203 407 chain 13858 chr1 248956422 + 109074433 109074595 SVA_B 1603 + 1443 1603 63785 154 2 0 6 chain 15438 chr1 248956422 + 109285736 109285932 MER4D1 891 + 0 196 61737 196 chain 3279 chr1 248956422 + 109290787 109290825 MIRb 242 + 22 61 97190 20 0 1 18 chain 4474 chr1 248956422 + 109449920 109449993 L1MC1 2226 + 1074 1145 88471 21 8 6 44 chain 47814 chr1 248956422 + 109554851 109555485 L1PB1 5432 + 3641 4269 30355 11 1 4 48 0 2 28 10 0 164 1 0 268 9 8 19 0 1 75 chain 3187 chr1 248956422 + 109649545 109649609 MER51A 677 + 176 230 98019 16 17 7 31 chain 15348 chr1 248956422 + 109683646 109684161 LTR10C 591 + 0 514 30211 34 2 0 476 0 1 3 chain 79729 chr1 248956422 + 109684169 109685187 MER11A 1151 + 0 1146 21687 85 0 91 24 1 0 94 4 0 244 0 1 60 8 4 61 0 10 142 0 1 4 5 38 61 0 1 225 chain 2295 chr1 248956422 + 109685187 109685264 LTR10C 591 + 514 591 30211 77 chain 53122 chr1 248956422 + 109686307 109686965 PABL_A 660 + 0 658 28522 89 2 1 26 0 1 219 1 0 86 0 1 235 chain 43798 chr1 248956422 + 109702091 109702614 LTR10C 591 + 0 523 32257 34 2 0 476 0 1 4 0 1 7 chain 79744 chr1 248956422 + 109702614 109703645 MER11A 1151 + 0 1151 21681 85 0 91 23 1 0 95 4 0 244 0 1 46 19 15 84 5 6 117 0 1 11 6 40 61 0 1 230 chain 89481 chr1 248956422 + 109706728 109708087 HERVK11-int 2540 + 911 2189 19762 57 25 17 16 23 8 24 9 8 24 2 0 65 2 1 22 28 27 7 3 0 28 13 3 10 1 0 25 13 2 35 21 1 440 5 0 104 1 0 189 1 0 78 10 9 78 chain 77031 chr1 248956422 + 109708620 109709643 MER11A 1151 + 0 1151 22308 85 0 91 24 1 0 94 4 0 241 11 12 137 5 6 129 6 40 29 1 2 5 1 0 25 0 1 190 0 4 31 0 1 4 chain 6288 chr1 248956422 + 109709643 109709716 LTR10C 591 + 518 591 80044 73 chain 52672 chr1 248956422 + 109710749 109711405 PABL_A 660 + 0 658 28676 89 2 1 26 0 1 219 1 0 86 0 1 88 0 2 145 chain 34806 chr1 248956422 + 109725516 109725932 LTR3 431 + 0 416 38152 250 0 1 96 1 0 69 chain 91812 chr1 248956422 + 109832923 109835411 HUERS-P1-int 2401 + 234 2139 19367 9 4 0 34 4 0 14 3 1 7 1 0 14 61 33 13 24 0 13 1 0 6 9 7 43 3 0 7 1 0 38 1 0 8 2 0 16 41 37 14 10 1 16 10 7 23 2 1 86 38 38 66 1 2 39 11 3 44 0 2 143 1 0 6 2 0 37 294 13 19 0 1 27 4 2 8 1 0 25 10 7 75 2 0 29 16 12 100 2 0 10 1 0 14 1 0 41 2 0 8 8 6 5 0 1 65 21 22 26 3 4 51 1 2 13 20 14 28 40 27 7 13 0 13 2 0 13 8 7 17 8 0 18 61 31 13 1 0 7 2 0 7 7 0 18 39 21 9 16 0 17 27 0 10 1 0 12 2 1 36 1 0 15 36 13 8 2 0 3 1 0 25 30 19 4 1 0 9 1 0 7 1 0 47 2 0 15 chain 238119 chr1 248956422 + 109841789 109844379 L1PA3long 6157 + 3564 6156 8519 2585 0 2 5 chain 3112 chr1 248956422 + 109846423 109846496 MER84 505 + 0 74 98673 20 20 22 8 1 0 24 chain 422379 chr1 248956422 + 109851067 109862136 L1PA6 6164 + 0 6162 4850 64 0 1 397 1 0 91 0 1 376 9 1 219 5919 5 92 0 5 682 0 8 212 1 2 55 1 3 111 1 0 78 0 1 212 0 1 14 0 5 445 0 4 90 2 0 10 4 5 155 1 968 999 0 4 97 0 13 128 0 2 291 0 1 143 1 2 4 1 0 154 0 2 9 chain 2993 chr1 248956422 + 109898710 109898742 MER58D 378 + 331 363 99933 32 chain 36539 chr1 248956422 + 109940595 109941092 MER1A 529 + 30 529 37051 50 17 17 191 0 1 168 11 12 60 chain 15023 chr1 248956422 + 109969292 109969489 L1MB3 1562 + 989 1185 62239 55 1 0 141 chain 11564 chr1 248956422 + 110329751 110329902 Tigger4b 360 + 201 354 67636 95 3 1 6 0 4 47 chain 33946 chr1 248956422 + 110413156 110413630 LTR15 485 + 0 475 38747 50 0 1 5 5 3 65 4 0 25 0 2 128 1 5 9 1 7 139 7 0 17 0 1 18 chain 31309 chr1 248956422 + 110437927 110438360 LTR7 482 + 0 468 40882 101 15 14 109 0 1 20 19 51 11 0 1 74 0 2 84 chain 7403 chr1 248956422 + 110509890 110510006 Tigger4 2445 + 183 299 76385 35 6 4 14 2 1 26 0 3 33 chain 4173 chr1 248956422 + 110510022 110510125 Tigger4a 237 + 150 235 90312 12 0 18 16 37 1 38 chain 32147 chr1 248956422 + 110659676 110660095 L1PA6 6164 + 5745 6161 40230 18 1 2 221 1 10 27 8 0 130 5 0 8 chain 51096 chr1 248956422 + 110678924 110679513 L1PA7 6471 + 5868 6461 29193 546 0 4 43 chain 108322 chr1 248956422 + 110807893 110809091 L1PA3long 6157 + 4958 6157 17277 152 0 1 1046 chain 10811 chr1 248956422 + 110832487 110832643 Tigger3c 601 + 354 509 68835 95 3 4 12 2 0 44 chain 86350 chr1 248956422 + 110834943 110835925 L1P1 4361 + 2830 3812 20354 982 chain 31118 chr1 248956422 + 110919149 110919585 MLT2A1 477 + 0 477 41044 142 0 1 26 0 4 122 6 0 6 1 12 11 1 0 61 17 49 43 chain 73119 chr1 248956422 + 110969640 110970739 L1PA13 3608 + 2399 3488 23295 21 9 10 46 2 0 141 0 3 250 30 30 232 12 11 17 7 6 107 2 0 62 6 5 41 6 5 10 2 0 39 17 13 40 chain 37335 chr1 248956422 + 111003185 111003708 L1PA8 5853 + 5333 5853 36527 125 12 16 90 1 0 9 1 2 31 8 6 70 1 0 9 1 0 5 1 0 44 2 1 19 2 1 92 chain 435698 chr1 248956422 + 111008124 111014443 L1PA8A 6298 + 565 6288 4651 243 3 0 134 0 3 99 0 1 55 0 4 264 8 6 214 17 14 32 14 9 13 0 1 132 1 2 540 0 9 170 24 3 6 0 1 247 0 1 189 0 1 78 242 2 337 15 17 19 1 5 50 0 1 42 1 0 38 0 2 5 2 0 80 1 2 69 10 1 160 3 0 5 0 1 560 10 11 240 0 4 95 10 2 35 1 0 90 5 6 151 2 1 28 9 0 36 0 7 135 0 1 104 0 15 96 3 2 78 1 3 131 0 28 431 376 0 22 1 0 4 2 0 100 chain 8369 chr1 248956422 + 111013972 111014067 L1PA8A 6298 + 6196 6291 73975 95 chain 9431 chr1 248956422 + 111014108 111014238 L1PA8A 6298 + 5956 6087 71634 42 4 3 6 0 1 74 0 1 4 chain 20133 chr1 248956422 + 111027530 111027821 THE1B 368 + 7 298 56215 8 2 0 22 0 5 130 11 9 12 2 0 5 0 2 94 1 0 4 chain 90854 chr1 248956422 + 111035441 111036693 L1PA11 4918 + 3254 4506 19529 65 0 2 340 37 36 428 3 2 91 1 4 106 1 0 65 20 17 25 2 6 33 2 0 13 2 1 18 chain 6875 chr1 248956422 + 111038022 111038216 L1MA3 4352 + 4171 4352 78051 9 1 0 18 3 5 7 4 0 49 2 0 20 60 52 21 chain 88185 chr1 248956422 + 111059202 111060179 L1PA3long 6157 + 3572 4553 20006 664 0 1 120 0 4 22 6 5 165 chain 25826 chr1 248956422 + 111068571 111068845 AluYa5 310 + 34 308 47982 274 chain 334618 chr1 248956422 + 111092064 111095987 L1PA6 6164 + 2250 6162 6147 75 2 0 669 13 0 228 0 1 148 0 1 277 0 1 361 0 3 635 1 0 188 0 1 701 0 1 529 1 2 83 4 0 8 chain 25606 chr1 248956422 + 111189889 111190183 AluY 311 + 7 302 48306 116 3 4 175 chain 60993 chr1 248956422 + 111233556 111234206 SVA_D 2077 + 1428 2077 26107 10 1 0 639 chain 26178 chr1 248956422 + 111259672 111259974 L1PA6 6164 + 5867 6162 47459 289 7 0 6 chain 46610 chr1 248956422 + 111290559 111291160 LTR66 600 + 0 600 30810 166 0 1 8 6 5 127 0 2 104 2 0 61 6 5 121 chain 36861 chr1 248956422 + 111291163 111291676 L1PA8 5853 + 5346 5853 36840 189 0 1 28 1 0 44 3 1 25 1 0 36 21 19 18 0 1 36 2 1 15 1 0 93 chain 516216 chr1 248956422 + 111295531 111302063 L1PA6 6164 + 3 6162 2461 61 63 1 678 0 12 177 0 1 1214 0 1 184 18 0 650 0 7 195 5 6 1006 0 8 917 0 1 150 0 1 172 0 1 387 318 0 36 6 0 284 2 0 9 chain 550147 chr1 248956422 + 111335215 111341368 L1PA3long 6157 + 4 6157 737 341 0 1 417 0 1 425 0 3 248 0 1 942 0 2 792 1 0 97 7 1 2154 0 1 68 1 0 511 1 0 148 chain 3426 chr1 248956422 + 111374992 111375030 L1MA3 4352 + 3321 3359 95846 38 chain 521352 chr1 248956422 + 111393765 111399895 L1PA6 6164 + 0 6161 2211 460 4 5 53 0 2 47 1 0 220 0 17 389 0 2 311 0 6 646 1 0 100 0 2 65 0 1 130 0 1 732 0 1 512 0 1 922 0 1 17 2 0 7 0 1 50 3 1 1090 1 2 367 chain 67772 chr1 248956422 + 111409253 111410323 L1PA14 3548 + 2415 3456 24503 33 13 12 75 6 5 90 0 3 38 13 0 17 5 4 246 3 1 14 2 0 37 14 15 35 0 1 67 52 49 9 1 0 55 1 0 93 0 1 16 1 0 11 5 1 36 4 2 10 2 1 6 1 0 16 1 0 42 chain 15150 chr1 248956422 + 111431425 111431643 L1PA8 5853 + 5639 5853 62096 36 5 4 11 1 0 50 2 1 19 2 1 92 chain 8845 chr1 248956422 + 111446797 111446904 HY1 111 + 0 109 72869 39 0 2 68 chain 48400 chr1 248956422 + 111494215 111495276 L1PREC2 3366 + 2221 3242 30147 45 0 3 213 0 1 69 5 38 103 0 33 26 2 0 42 15 13 43 1 0 4 3 0 13 52 39 15 3 0 4 0 1 9 0 1 16 3 0 11 22 8 35 6 4 22 0 1 13 211 150 19 10 5 6 4 0 16 chain 27669 chr1 248956422 + 111526205 111526583 THE1C 375 + 0 375 45372 118 0 1 60 22 19 151 1 0 26 chain 436957 chr1 248956422 + 111680594 111686272 L1PA7 6471 + 1015 6461 4623 209 15 0 76 7 8 54 304 0 153 1 2 357 5 7 13 0 3 266 4 6 181 1 0 65 0 19 198 6 0 69 1 0 4 2 6 32 2 5 141 0 4 181 23 29 381 3 2 63 0 4 27 0 2 85 0 3 737 0 1 4 0 2 8 0 11 92 0 4 136 1 13 230 0 2 45 2 0 295 0 9 192 3 2 166 1 2 436 1 0 52 0 1 308 0 3 40 chain 59672 chr1 248956422 + 111799928 111800562 SVA_F 1814 + 1181 1814 26468 623 1 0 10 chain 6700 chr1 248956422 + 111830650 111830742 Charlie1 1172 + 866 965 78639 47 3 10 42 chain 20892 chr1 248956422 + 111831244 111831578 MSTA 426 + 0 405 55264 4 1 0 96 7 44 62 3 6 24 7 5 13 3 17 25 1 21 88 chain 23636 chr1 248956422 + 111959809 111960187 THE1C 375 + 0 375 51376 179 0 3 18 12 6 15 23 11 82 14 27 8 1 0 26 chain 6375 chr1 248956422 + 112059342 112059435 MER58A 224 + 99 194 79761 55 2 4 36 chain 110510 chr1 248956422 + 112120082 112121805 L1PA14 3548 + 1771 3436 17007 26 4 0 93 14 17 68 0 1 5 2 0 100 15 9 143 5 3 132 0 5 158 8 6 7 0 1 83 0 4 43 34 30 37 23 0 178 6 3 14 4 2 14 2 0 47 9 5 16 1 2 87 0 2 6 6 0 13 2 0 6 1 0 16 7 6 62 1 0 114 13 8 36 4 2 10 10 8 15 1 0 22 chain 22710 chr1 248956422 + 112150292 112150666 THE1D 372 + 0 372 52815 144 82 80 148 chain 14000 chr1 248956422 + 112176478 112176719 Tigger3a 397 + 45 334 63598 30 42 66 7 0 10 72 0 13 48 1 2 41 chain 520617 chr1 248956422 + 112211668 112217790 L1PA5 6144 + 0 6130 2246 121 0 14 21 0 12 331 0 1 24 1 5 76 0 1 73 0 1 256 0 1 233 9 0 257 1 0 766 0 2 85 18 0 28 2 0 35 0 2 899 0 3 421 4 0 103 0 1 162 1 0 1358 1 2 836 chain 547587 chr1 248956422 + 112221418 112227438 L1PA2 6032 + 0 6032 890 149 3 1 6 0 2 55 0 1 152 0 9 2518 0 1 2617 0 1 520 chain 5415 chr1 248956422 + 112260179 112260300 LTR33 499 + 25 145 83622 50 46 45 25 chain 24387 chr1 248956422 + 112286431 112286718 L1PA6 6164 + 5875 6162 50183 287 chain 458423 chr1 248956422 + 112288052 112295941 L1PA5 6144 + 33 5383 4167 291 0 20 831 0 3 757 1 2 1221 1 0 308 0 1 15 0 4 368 0 2 620 2578 0 440 0 1 38 7 16 323 2 1 88 chain 169600 chr1 248956422 + 112292609 112295041 SVA_E 1901 + 0 1901 11123 153 1 0 467 0 40 157 1 0 26 2 0 80 53 0 172 1 0 201 513 0 605 chain 4586 chr1 248956422 + 112293496 112293549 SVA_E 1901 + 1221 1274 62002 53 chain 4642 chr1 248956422 + 112293945 112294004 SVA_E 1901 + 1220 1279 78427 8 0 1 32 1 0 18 chain 1878 chr1 248956422 + 112294004 112294048 SVA_E 1901 + 927 971 54974 44 chain 23142 chr1 248956422 + 112294048 112294436 SVA_E 1901 + 923 1169 46407 4 1 0 168 1 0 11 140 0 63 chain 4028 chr1 248956422 + 112294233 112294347 SVA_E 1901 + 1233 1305 59131 22 42 0 50 chain 2458 chr1 248956422 + 112294347 112294373 SVA_E 1901 + 831 857 81245 26 chain 99730 chr1 248956422 + 112340358 112341444 L1PA3long 6157 + 5069 6157 18329 237 0 1 693 0 1 156 chain 13548 chr1 248956422 + 112373110 112373276 L1PB4 2604 + 2386 2552 64255 166 chain 3213 chr1 248956422 + 112423346 112423462 L1MA8 2339 + 2233 2327 97771 24 3 0 7 56 37 26 chain 4296 chr1 248956422 + 112454659 112454711 MER103C 291 + 76 128 89538 52 chain 8795 chr1 248956422 + 112483055 112483179 FAM 185 + 23 143 72996 14 8 3 20 0 1 82 chain 5196 chr1 248956422 + 112600373 112600435 MER41B 635 + 485 547 84694 62 chain 107244 chr1 248956422 + 112639767 112641229 SVA_D 2077 + 727 2070 17411 72 0 79 29 2 0 5 2 0 5 0 38 81 0 2 145 49 0 205 0 1 2 146 0 10 40 0 669 chain 2497 chr1 248956422 + 112640108 112640157 SVA_D 2077 + 874 918 34144 2 1 0 32 2 0 9 2 0 1 chain 7439 chr1 248956422 + 112640364 112640510 SVA_D 2077 + 1087 1252 34144 4 0 2 138 0 17 4 chain 2038 chr1 248956422 + 112640520 112640560 SVA_D 2077 + 1262 1302 34144 40 chain 33627 chr1 248956422 + 112724433 112724799 L1PA2 6032 + 5668 6032 38980 351 2 0 13 chain 82649 chr1 248956422 + 112728412 112729413 SVA_A 1864 + 59 1855 21094 50 0 10 302 0 416 39 0 33 39 38 379 329 2 1 58 4 0 140 chain 84317 chr1 248956422 + 112765649 112766682 MER11C 1089 + 0 1063 20751 249 0 1 56 7 11 118 0 19 235 1 5 43 0 1 127 0 1 197 chain 90672 chr1 248956422 + 112773453 112774980 SVA_F 1814 + 646 1814 19557 14 0 3 4 190 0 40 4 44 25 1 0 9 141 6 25 0 39 30 1 2 11 127 0 49 0 15 39 1 0 10 1 0 166 1 0 4 1 0 633 chain 16113 chr1 248956422 + 112773471 112773661 SVA_F 1814 + 744 1027 34634 32 0 79 25 0 1 17 2 1 49 0 15 38 1 0 26 chain 11958 chr1 248956422 + 112773740 112773881 SVA_F 1814 + 1106 1247 34634 141 chain 1415 chr1 248956422 + 112773996 112774051 SVA_F 1814 + 1009 1064 58183 55 chain 1125 chr1 248956422 + 112774051 112774075 SVA_F 1814 + 1065 1089 37147 24 chain 28519 chr1 248956422 + 112809666 112810072 LTR7 482 + 0 475 44086 69 8 46 109 9 41 20 13 11 9 0 1 169 chain 260812 chr1 248956422 + 112810082 112813477 HERVH-int 3825 + 0 3825 7950 181 0 2 150 1 0 77 11 10 26 119 353 388 0 5 34 15 0 188 3 0 16 9 0 349 0 1 226 0 4 62 17 22 29 9 0 508 0 9 313 7 0 133 0 3 29 0 200 7 0 10 39 0 1 258 0 1 191 chain 25368 chr1 248956422 + 112814992 112815325 LTR7 482 + 0 459 48669 69 8 46 77 1 88 25 0 1 153 chain 257853 chr1 248956422 + 112827912 112831176 Harlequin-int 5206 + 125 3426 8030 10 3 1 30 6 3 117 0 5 9 1 0 70 1 0 6 0 1 106 2 0 90 2 4 24 1 2 79 1 0 47 8 15 58 0 3 57 21 1 123 0 39 196 0 1 1327 23 18 187 1 0 10 0 9 162 2 1 385 0 5 61 0 1 4 1 0 23 0 1 10 chain 33447 chr1 248956422 + 112832261 112832724 LTR2 463 + 0 463 39133 129 0 3 167 9 5 64 0 1 4 24 25 9 1 0 56 chain 38589 chr1 248956422 + 112853056 112853571 MER41A 554 + 5 531 35647 78 2 1 10 0 1 138 1 4 159 7 10 62 0 5 58 chain 5592 chr1 248956422 + 112853604 112853667 L1MB5 1630 + 1407 1470 82840 63 chain 7925 chr1 248956422 + 112861051 112861173 Ricksha_0 1343 + 1162 1282 75058 21 16 14 85 chain 41031 chr1 248956422 + 112868743 112869244 LTR2C 499 + 6 499 33948 168 9 0 243 18 19 63 chain 5233 chr1 248956422 + 112874428 112874492 MLT1F1 559 + 0 63 84539 12 1 0 51 chain 3315 chr1 248956422 + 112895160 112895197 LTR12C 1709 + 1118 1155 96883 37 chain 5022 chr1 248956422 + 112895303 112895569 LTR12C 1709 + 650 718 85556 33 198 0 35 chain 8071 chr1 248956422 + 112940880 112941023 L1PA16 3655 + 3421 3578 74697 25 8 12 19 5 11 15 3 7 68 chain 5097 chr1 248956422 + 113039054 113039115 Tigger2b_Pri 1066 + 317 378 85177 61 chain 135822 chr1 248956422 + 113068816 113071152 SVA_F 1814 + 335 1814 13457 545 1 0 18 451 0 39 1 0 10 0 15 251 419 0 601 chain 11006 chr1 248956422 + 113069447 113069639 SVA_F 1814 + 916 1123 42814 32 17 32 143 chain 15304 chr1 248956422 + 113069657 113069831 SVA_F 1814 + 900 1089 39303 48 3 18 123 chain 22506 chr1 248956422 + 113070132 113070500 SVA_F 1814 + 988 1213 45055 13 1 0 10 1 0 108 141 0 94 chain 7107 chr1 248956422 + 113070265 113070406 SVA_F 1814 + 928 992 68639 19 92 15 30 chain 5817 chr1 248956422 + 113070284 113070362 SVA_F 1814 + 1011 1116 71553 26 17 44 35 chain 16896 chr1 248956422 + 113083802 113083997 L1PA5 6144 + 5933 6128 59918 195 chain 5810 chr1 248956422 + 113118980 113119072 MIR 256 + 90 181 81875 22 13 12 57 chain 23658 chr1 248956422 + 113129038 113129328 AluSc 308 + 0 298 51343 52 8 16 230 chain 44144 chr1 248956422 + 113172834 113173636 MER9a3 513 + 0 513 32052 175 289 0 338 chain 6452 chr1 248956422 + 113186186 113186261 L1MA4A 3247 + 3032 3107 79505 75 chain 4068 chr1 248956422 + 113196326 113196453 MER21B 843 + 326 483 90978 29 62 72 12 0 20 24 chain 38884 chr1 248956422 + 113201233 113201729 Tigger1 2417 + 1258 1759 35444 125 0 1 4 0 2 144 1 0 129 9 12 84 chain 22095 chr1 248956422 + 113201772 113202077 LTR23 429 + 106 411 53707 32 10 11 134 1 0 128 chain 38669 chr1 248956422 + 113202323 113202828 LTR10D 510 + 0 510 35590 64 1 0 4 8 18 15 11 0 89 0 4 68 0 2 27 0 1 218 chain 37693 chr1 248956422 + 113218901 113219355 MER4A1 472 + 0 472 36278 229 0 15 63 0 2 52 0 1 110 chain 17724 chr1 248956422 + 113241763 113241963 L1PA7 6471 + 6268 6467 58982 47 1 0 152 chain 3362 chr1 248956422 + 113314539 113314576 L1M1 2793 + 2246 2283 96446 37 chain 128267 chr1 248956422 + 113317641 113319171 L1PA6 6164 + 4622 6152 14248 379 1 2 312 1 9 435 9 0 241 11 11 141 chain 13799 chr1 248956422 + 113320029 113320199 L1MA3 4352 + 3912 4082 63884 170 chain 368299 chr1 248956422 + 113341617 113345790 L1HS 6032 + 1866 6032 5692 37 1 0 5 0 1 283 7 0 894 0 1 730 1 2 2208 2 0 5 chain 65441 chr1 248956422 + 113346042 113346805 L1PA4 6152 + 5379 6146 25084 438 6 7 8 0 1 168 0 1 36 0 1 107 chain 2034 chr1 248956422 + 113359229 113359472 MER9a1 513 + 0 243 39056 243 chain 166474 chr1 248956422 + 113359513 113362950 L1PA2 6032 + 2522 6029 11307 1075 0 70 2362 chain 1883 chr1 248956422 + 113363010 113363235 MER9a1 513 + 267 494 39056 187 0 2 38 chain 5018 chr1 248956422 + 113366177 113366259 MER96B 391 - 224 305 85575 47 3 4 10 2 0 20 chain 122588 chr1 248956422 + 113459784 113461816 L1PA14 3548 + 1789 3485 15099 386 1 0 305 1 6 49 327 12 59 2 1 82 1 0 242 10 8 14 2 0 33 6 5 10 2 0 4 2 0 108 21 24 84 1 0 111 1 0 9 5 2 36 4 2 12 1 0 5 1 0 16 1 0 41 6 0 10 1 0 20 chain 231519 chr1 248956422 + 113489723 113493248 L1PA13 3608 + 86 3548 8709 4 1 0 19 7 5 22 10 7 21 2 1 12 0 1 17 34 23 73 2 0 111 1 0 14 14 12 17 2 0 15 11 6 15 1 0 19 3 1 15 0 1 18 1 0 43 0 4 49 2 0 126 0 1 48 0 1 22 31 37 18 0 1 55 0 1 167 10 1 53 5 7 11 4 0 62 5 9 47 0 4 232 0 4 76 6 5 30 2 1 142 0 1 81 0 1 86 4 8 27 16 20 106 1 0 209 8 7 51 0 2 439 33 1 60 4 8 146 17 19 68 1 0 4 0 1 23 1 0 107 5 7 62 2 1 54 1 0 5 2 0 45 22 18 7 1 0 26 20 12 14 14 7 12 3 0 11 chain 565217 chr1 248956422 + 113497220 113503232 L1HS 6032 + 21 6032 88 5998 1 0 13 chain 194724 chr1 248956422 + 113512615 113514785 L1PA3long 6157 + 3984 6157 9898 1136 1 0 190 0 4 689 1 0 11 0 1 82 1 0 55 0 1 4 chain 115584 chr1 248956422 + 113523302 113524822 THE1B-int 1605 + 27 1592 16302 47 0 7 349 0 25 228 27 28 240 0 1 4 1 0 161 2 10 224 1 2 132 1 0 4 0 1 4 1 3 46 1 2 47 chain 24698 chr1 248956422 + 113524835 113525196 THE1B 368 + 0 368 49739 169 1 0 29 35 45 70 1 0 18 1 0 37 chain 7928 chr1 248956422 + 113533211 113533396 L1PA16 3655 + 3365 3552 75051 49 6 7 45 61 62 24 chain 24241 chr1 248956422 + 113550128 113550426 AluYk4 311 + 0 292 50434 126 7 0 15 9 10 141 chain 272955 chr1 248956422 + 113558033 113562586 L1PA11 4918 + 1 3682 7632 41 2 0 36 5 1 23 14 13 15 2 0 50 1 0 33 2 0 5 2 1 78 1 4 24 10 11 5 0 1 296 5 0 161 10 9 48 16 33 153 4 1 62 1 0 241 2 18 20 14 0 7 12 0 123 313 0 73 0 1 227 0 1 46 245 0 398 5 9 66 1 0 89 1 0 236 0 1 260 0 2 293 0 2 36 2 0 142 5 4 24 4 3 93 308 1 145 1 0 16 chain 12116 chr1 248956422 + 113598963 113599097 L1PA3long 6157 - 3126 3262 66464 74 0 2 60 chain 284296 chr1 248956422 + 113599097 113602232 L1PA3long 6157 + 3021 6157 7309 284 1 0 1198 1 2 238 0 2 375 1 0 1037 chain 55420 chr1 248956422 + 113602239 113603590 L1PB3 3668 + 476 1435 27743 208 0 2 10 0 1 117 15 20 13 1 0 40 500 124 56 18 8 27 1 2 65 0 4 31 2 0 5 46 30 196 chain 61983 chr1 248956422 + 113640052 113640891 L1PA8 5853 + 5016 5853 25870 415 1 2 131 1 0 44 2 0 8 1 5 58 1 0 21 7 6 34 2 1 19 1 0 93 chain 3202 chr1 248956422 + 113702880 113702914 L1MC4 1079 + 837 871 97875 34 chain 45900 chr1 248956422 + 113728120 113729134 L1MA2 4263 + 3432 4113 31104 31 6 6 115 13 9 85 1 4 127 8 5 110 325 0 21 19 23 90 7 0 47 1 0 8 chain 28762 chr1 248956422 + 113842819 113843119 AluYa8 305 + 0 300 43689 300 chain 18431 chr1 248956422 + 113995252 113995577 L1M2c 2366 + 1993 2299 58192 25 2 1 50 1 0 19 1 0 18 2 0 33 2 0 43 1 0 10 8 6 46 3 0 10 1 0 10 1 0 4 3 2 8 3 1 16 1 0 4 chain 123805 chr1 248956422 + 114019440 114021015 THE1A-int 1579 + 0 1579 14881 498 1 0 4 0 1 427 2 3 133 0 7 19 3 0 56 2 0 372 0 1 58 chain 27451 chr1 248956422 + 114021015 114021368 THE1A 353 + 0 353 45637 47 0 1 48 2 1 236 0 2 8 2 0 10 chain 33158 chr1 248956422 + 114025165 114026004 MER4B 649 + 112 640 39398 4 0 1 82 0 23 95 4 1 46 5 0 59 8 0 53 1 0 34 333 17 37 17 16 53 1 0 7 chain 19373 chr1 248956422 + 114029671 114029933 HERVH-int 3825 + 3301 3564 57158 52 13 14 197 chain 39740 chr1 248956422 + 114037074 114037525 LTR7 482 + 0 482 34865 263 4 35 184 chain 81956 chr1 248956422 + 114058147 114059120 LTR5_Hs 974 + 0 974 21254 239 1 0 45 1 2 9 4 0 529 0 7 40 2 0 103 chain 12370 chr1 248956422 + 114142969 114143653 Tigger1 2417 + 1469 2373 66197 108 506 726 70 chain 51522 chr1 248956422 + 114204350 114205738 L1PB1 5432 + 4603 5421 29035 18 0 1 83 0 2 97 0 9 71 0 3 64 1 3 139 0 1 9 589 31 11 1 0 11 9 5 7 2 0 52 2 1 15 1 0 45 1 0 15 1 0 4 2 0 7 10 1 19 2 0 5 1 0 14 6 4 20 1 0 21 1 0 13 1 0 17 chain 3282 chr1 248956422 + 114238659 114238809 MER3 215 + 6 163 97168 19 97 104 34 chain 532908 chr1 248956422 + 114239265 114247937 L1PA7 6471 + 0 6443 1715 228 16 1 43 6 7 126 1 2 212 0 1 230 0 1 6 2 1 352 0 4 21 0 4 901 1 0 18 314 0 101 1899 0 270 11 9 247 0 1 711 1 0 192 16 5 142 1 0 116 1 0 527 0 8 285 1 2 48 9 10 757 10 14 19 0 2 146 2 1 365 1 0 16 0 2 110 0 2 41 9 8 98 9 0 5 4 0 25 chain 147703 chr1 248956422 + 114241879 114243729 SVA_A 1864 + 18 1849 12504 561 0 37 104 3 0 45 0 2 35 3 0 58 0 36 18 3 0 32 40 0 37 8 5 156 2 1 100 2 0 15 39 0 589 chain 2590 chr1 248956422 + 114242746 114242781 SVA_A 1864 + 1022 1057 52024 35 chain 31792 chr1 248956422 + 114290027 114290452 MLT2A1 477 + 6 472 40504 137 6 8 15 3 7 151 1 0 61 3 39 48 chain 525285 chr1 248956422 + 114303997 114310117 L1PA3long 6157 + 4 6157 2035 116 4 17 4 0 1 12 26 12 408 0 1 54 0 1 68 0 7 462 0 3 1026 0 1 355 0 21 1115 2 1 470 9 8 1216 0 1 380 0 1 30 1 0 362 chain 33186 chr1 248956422 + 114310138 114310511 L1PA4 6152 + 5768 6141 39369 373 chain 9828 chr1 248956422 + 114359558 114359744 LOR1-int 1871 + 955 1186 70769 44 13 10 19 20 69 33 1 0 56 chain 32875 chr1 248956422 + 114360883 114361336 MER4A1 472 + 0 470 39608 93 8 1 136 0 22 139 11 13 66 chain 203633 chr1 248956422 + 114372502 114376008 MER4-int 2692 + 67 2680 9585 32 1 0 11 9 10 8 1 0 281 0 1 68 9 1 255 0 5 179 0 1 119 1 0 409 0 4 21 0 1 13 298 0 168 7 1 129 0 2 78 0 1 73 7 8 55 1 0 24 600 0 248 3 0 7 7 2 293 0 14 91 chain 33645 chr1 248956422 + 114376023 114376462 MER4A1 472 + 0 456 38967 93 8 1 136 0 22 127 0 2 75 chain 43291 chr1 248956422 + 114382996 114383722 L1PB1 5432 + 4717 5417 32582 85 1 4 191 1 2 38 9 10 56 6 5 5 0 1 24 1 0 8 1 0 10 23 14 23 8 9 18 2 1 15 1 0 38 11 10 11 1 0 7 20 10 15 2 0 4 1 0 14 1 0 25 1 0 21 1 0 13 1 0 13 chain 7030 chr1 248956422 + 114459780 114459862 LTR54 533 + 1 83 77499 82 chain 4804 chr1 248956422 + 114464977 114465106 MLT1D 503 + 376 503 86678 18 52 51 30 1 0 28 chain 61588 chr1 248956422 + 114479792 114480495 SVA_C 1631 + 926 1630 25963 77 0 1 33 0 1 155 0 1 64 1 0 289 0 1 63 2 0 19 chain 120671 chr1 248956422 + 114562507 114563893 L1PA5 6144 + 4738 6139 15413 131 2 1 421 0 4 183 1 0 41 1 8 157 0 2 60 0 3 76 0 1 313 chain 20413 chr1 248956422 + 114599886 114600118 L1PA5 6144 + 5903 6134 55870 93 1 0 138 chain 7864 chr1 248956422 + 114727719 114727820 HY1 111 + 0 106 75217 35 0 6 21 1 0 44 chain 3423 chr1 248956422 + 114732111 114732169 MER30 238 + 98 179 95881 12 5 28 41 chain 40912 chr1 248956422 + 114762277 114762747 L1PA5 6144 + 5662 6132 34022 327 0 1 12 1 0 130 chain 47375 chr1 248956422 + 114776675 114777242 L1PA6 6164 + 5577 6145 30511 128 0 2 296 7 14 8 7 0 80 1 0 40 chain 20564 chr1 248956422 + 114823166 114823468 MER4A1 472 + 0 301 55689 235 37 36 30 chain 10832 chr1 248956422 + 114823468 114823590 MER11B 1079 + 0 122 68804 122 chain 82742 chr1 248956422 + 114823846 114824794 MER11C 1089 + 125 1073 21076 948 chain 6839 chr1 248956422 + 114847276 114847420 L1MA3 4352 + 4220 4352 78172 15 4 0 25 1 0 22 1 0 6 1 0 20 7 6 14 1 0 4 6 3 17 chain 26624 chr1 248956422 + 114863795 114864132 L1PA8 5853 + 5517 5847 46796 47 1 0 46 2 0 69 1 0 8 2 1 52 2 1 19 1 0 87 chain 11972 chr1 248956422 + 114869611 114869803 Tigger4a 237 + 26 234 66882 12 7 30 109 1 0 15 13 7 35 chain 525501 chr1 248956422 + 114932436 114938558 L1PA5 6144 + 0 6144 2021 120 0 14 341 0 6 451 0 1 4 1 0 232 9 0 157 7 3 157 3 0 297 0 2 471 7 9 138 0 1 480 0 1 260 2 6 18 1 0 289 6 8 873 1 9 141 1 2 803 1 0 592 1 0 258 chain 6938 chr1 248956422 + 115001990 115002069 L1PB1 5432 + 3912 3991 77817 79 chain 13228 chr1 248956422 + 115010873 115011033 HERVL-int 5654 + 1886 2046 64733 160 chain 9254 chr1 248956422 + 115059091 115059265 L1PB1 5432 + 5266 5419 72011 14 1 0 16 2 0 6 16 6 15 2 0 9 1 0 14 2 0 24 1 0 21 1 0 13 1 0 15 chain 28897 chr1 248956422 + 115096925 115097291 L1PREC2 3366 + 2044 2409 43483 192 1 0 173 chain 37885 chr1 248956422 + 115117404 115117981 MER4B 649 + 0 641 36155 30 3 0 65 2 1 61 0 42 30 5 16 71 34 53 55 1 0 84 2 1 53 1 0 71 1 0 8 chain 552607 chr1 248956422 + 115147821 115153838 L1PA2 6032 + 12 6028 573 244 2 0 501 3 0 1865 3 5 433 0 1 2953 0 1 13 chain 2847 chr1 248956422 + 115178234 115178264 Kanga2_a 737 + 389 419 101267 30 chain 25247 chr1 248956422 + 115254277 115254547 AluYa5 310 + 41 310 48876 91 1 0 178 chain 148955 chr1 248956422 + 115358739 115363168 L1P2 5180 + 1407 3232 12424 327 0 4 33 0 1 64 2601 0 325 2 0 76 5 0 983 1 0 12 chain 21277 chr1 248956422 + 115433088 115433443 THE1A 353 + 0 353 54797 15 9 7 22 20 21 29 1 0 17 0 2 6 17 15 199 0 2 8 2 0 10 chain 113656 chr1 248956422 + 115502566 115504071 THE1C-int 1605 + 18 1596 16597 78 0 57 17 3 0 157 0 6 102 11 18 70 13 14 119 1 0 4 0 1 31 15 16 656 0 3 32 0 1 196 chain 44387 chr1 248956422 + 115602810 115603337 L1PA3long 6157 + 5666 6157 31889 440 36 0 51 chain 65430 chr1 248956422 + 115627069 115627768 L1PA2 6032 + 4002 4701 25087 699 chain 17275 chr1 248956422 + 115669434 115669791 THE1B 368 + 14 368 59489 95 115 105 18 0 8 66 7 6 56 chain 100279 chr1 248956422 + 115779662 115780829 L1PA6 6164 + 4312 5477 18267 367 13 11 787 chain 64457 chr1 248956422 + 115784206 115784915 L1PA2 6032 + 5316 6028 25319 428 0 3 139 0 1 125 1 0 16 chain 4095 chr1 248956422 + 115808275 115808321 MER20 218 + 161 207 90810 46 chain 4537 chr1 248956422 + 115939110 115939162 MLT1A 405 + 339 391 88117 52 chain 399200 chr1 248956422 + 115962133 115968063 L1PB1 5432 + 19 5404 5166 344 12 22 197 6 2 7 0 4 88 0 1 40 13 8 7 0 11 6 6 0 121 0 1 383 8 9 125 1 0 6 16 1 24 2 1 163 27 26 39 0 1 410 4 7 298 7 8 71 4 2 41 3 0 333 228 0 168 0 1 153 0 12 44 0 1 458 0 3 44 12 14 390 0 1 284 0 2 224 1 3 50 9 8 10 1 0 8 1 3 7 296 0 170 14 7 212 1 0 9 7 6 20 1 0 9 1 0 9 6 2 9 2 0 53 2 1 16 1 0 44 1 0 15 1 0 4 3 0 11 9 0 16 1 0 4 3 1 13 3 1 24 1 0 21 1 0 13 chain 126488 chr1 248956422 + 116047764 116051704 L1PB1 5432 + 479 4458 5758 17 3 10 10 0 1 4 5 4 518 2 1 184 0 2 172 11 0 158 0 1 19 1 0 75 0 1 31 0 2 185 1 0 42 0 2 567 20 19 78 0 3 128 1 0 129 1 0 42 11 14 271 0 4 107 0 11 73 0 7 185 1 0 5 1 2 146 12 16 154 0 8 412 0 1 158 chain 554736 chr1 248956422 + 116051919 116058065 L1PA3long 6157 + 4 6155 431 308 4 11 293 11 4 547 0 3 1429 1 0 192 1 3 1607 0 1 1753 chain 31397 chr1 248956422 + 116058108 116059086 L1PB1 5432 + 4458 5413 5758 163 2 0 68 14 16 131 6 5 255 18 18 24 1 0 8 1 0 10 6 2 9 2 0 33 0 1 19 2 1 16 1 0 44 1 0 15 21 17 14 11 8 11 2 0 24 1 0 21 1 0 13 1 0 9 chain 15853 chr1 248956422 + 116126847 116127100 MER47A 366 + 75 365 61226 37 0 26 148 3 20 12 31 25 22 chain 111873 chr1 248956422 + 116135021 116136340 L1PA3long 6157 + 3037 4357 16828 534 86 86 289 0 1 410 chain 162882 chr1 248956422 + 116136340 116138120 L1PA3long 6157 + 4361 6144 11552 1029 0 1 337 0 2 414 chain 27686 chr1 248956422 + 116212262 116212687 L1PA8 5853 + 5407 5843 45338 157 9 8 38 2 0 67 26 42 21 2 1 15 11 10 77 chain 242241 chr1 248956422 + 116213734 116216392 L1PA3long 6157 + 3492 6157 8419 1960 0 7 698 chain 8577 chr1 248956422 + 116385539 116385705 MER21A 919 + 2 177 73503 79 41 52 16 1 0 8 1 0 20 chain 7013 chr1 248956422 + 116407670 116407818 MER5A 189 + 5 168 77558 13 2 5 52 4 12 22 10 12 13 12 14 20 chain 3163 chr1 248956422 + 116447972 116448013 Tigger3b 1229 - 187 227 98259 28 1 0 12 chain 6272 chr1 248956422 + 116452539 116452635 HY3 101 + 10 100 80086 11 10 4 75 chain 4039 chr1 248956422 + 116485779 116485825 MER63B 433 + 328 374 91159 46 chain 25180 chr1 248956422 + 116536427 116536773 THE1D 372 + 0 360 48989 101 2 1 5 0 1 36 13 14 21 0 13 168 chain 5751 chr1 248956422 + 116560108 116560182 MER33 330 + 166 240 82125 74 chain 170185 chr1 248956422 + 116717924 116719731 L1HS 6032 + 4225 6032 11096 1807 chain 4354 chr1 248956422 + 116749849 116749900 MER34C_ 573 + 251 302 89149 51 chain 6263 chr1 248956422 + 116762144 116762287 MER53 195 + 0 195 80116 33 52 104 58 chain 370255 chr1 248956422 + 116785625 116791309 L1PB1 5432 + 17 5404 5649 9 6 0 121 4 10 38 20 23 25 2 1 7 0 1 50 16 15 59 0 1 161 42 42 11 0 4 87 11 15 48 0 9 11 8 4 113 1 2 148 2 1 25 10 6 86 2 0 147 1 0 90 15 21 270 7 0 295 1 0 28 27 10 76 12 10 328 6 0 9 21 27 33 1 0 16 9 10 138 0 2 128 0 5 49 1 0 12 32 35 246 0 1 580 7 10 90 344 57 105 0 3 13 0 3 624 0 1 470 10 22 20 1 0 12 1 0 10 7 3 9 2 0 52 2 1 9 8 7 43 1 0 16 2 0 6 16 6 18 11 8 12 2 0 24 1 0 22 2 1 11 chain 5948 chr1 248956422 + 116794969 116795056 LTR38B 592 + 492 578 81288 69 6 5 12 chain 29745 chr1 248956422 + 116803581 116803981 MER1A 529 + 135 528 42314 235 2 1 92 14 8 57 chain 22129 chr1 248956422 + 116821321 116821617 MER1B 344 + 45 344 53656 171 4 0 52 17 24 52 chain 26226 chr1 248956422 + 116836433 116837114 THE1B 368 + 0 368 47380 41 1 16 44 0 1 61 328 0 13 1 0 192 chain 116216 chr1 248956422 + 116837156 116838690 THE1B-int 1605 + 42 1599 16185 220 6 8 58 0 6 96 0 25 24 16 16 220 2 0 6 0 2 489 35 26 166 1 0 195 chain 28085 chr1 248956422 + 116838695 116839045 THE1B 368 + 0 368 44738 44 0 15 113 1 0 29 0 4 163 chain 37175 chr1 248956422 + 116843306 116843849 MLT2A2 560 + 0 560 36632 142 1 2 55 66 67 179 0 10 72 0 5 28 chain 35173 chr1 248956422 + 116859026 116859463 MER41A 554 + 0 441 37910 19 0 2 144 0 4 231 3 0 27 0 1 13 chain 32454 chr1 248956422 + 116862346 116862796 LTR7B 505 + 0 490 39986 108 0 10 57 0 38 12 35 27 26 0 2 85 1 0 76 14 13 36 chain 230609 chr1 248956422 + 116863354 116866519 HERVH-int 3825 + 809 3824 8731 362 1 4 48 15 0 207 9 0 104 7 12 56 0 1 4 1 0 167 2 1 80 0 30 61 8 12 91 48 53 306 0 1 5 1 7 223 1 0 156 14 0 172 165 0 43 1 0 77 0 3 378 1 0 351 chain 542415 chr1 248956422 + 116974745 116980856 L1PA5 6144 + 0 6135 1183 799 0 1 1501 0 1 211 0 1 199 10 6 55 0 4 37 0 1 360 1 0 370 0 1 705 0 3 1016 0 4 16 0 4 340 0 7 74 0 2 417 chain 15715 chr1 248956422 + 116992915 116993209 L1PB1 5432 + 5156 5423 61389 3 2 0 9 2 0 52 2 1 15 1 0 44 1 0 16 2 0 6 16 6 15 2 0 9 1 0 14 2 0 24 1 0 34 1 0 15 1 0 4 chain 25368 chr1 248956422 + 117000859 117001148 L1PA5 6144 + 5846 6135 48670 289 chain 23401 chr1 248956422 + 117068267 117068554 L1PA5 6144 + 5857 6144 51754 287 chain 5443 chr1 248956422 + 117132778 117132855 MER33 330 + 123 199 83492 31 1 0 45 chain 34022 chr1 248956422 + 117172717 117173259 LTR12_ 688 + 0 688 38693 25 12 10 25 1 5 15 0 66 21 1 0 7 41 0 245 0 1 14 15 0 47 0 133 7 0 1 66 chain 4790 chr1 248956422 + 117173310 117173362 MLT1C 463 + 135 187 86749 52 chain 15408 chr1 248956422 + 117192914 117193245 MER2 342 + 13 342 61774 36 71 84 82 5 6 67 31 15 39 chain 487564 chr1 248956422 + 117217595 117223133 L1PA4 6152 + 1 5522 3478 872 0 1 4 1 0 160 4 5 104 21 1 2216 2 1 143 0 1 218 0 1 113 0 1 1680 chain 18301 chr1 248956422 + 117316909 117317113 L1PA4 6152 + 3487 3691 58357 204 chain 30533 chr1 248956422 + 117317113 117317469 L1PA4 6152 + 3693 4048 41538 255 1 0 100 chain 8226 chr1 248956422 + 117337958 117338072 LTR12B 2670 + 2064 2170 74334 24 8 0 82 chain 116447 chr1 248956422 + 117449982 117451516 THE1B-int 1605 + 8 1600 16145 48 0 1 34 2 16 323 1 26 207 0 1 47 1 4 106 0 9 125 12 8 171 3 7 33 2 1 168 0 1 175 0 5 76 chain 87521 chr1 248956422 + 117477045 117478110 L1PA7 6471 + 3717 4785 20133 96 8 12 71 4 0 41 2 1 410 0 3 167 0 2 165 1 0 100 chain 4522 chr1 248956422 + 117513256 117513308 L1MB2 1706 + 1642 1694 88202 52 chain 261963 chr1 248956422 + 117518555 117522168 L1PB1 5432 + 1682 5419 7910 22 0 2 840 0 4 37 0 3 7 0 10 7 16 6 173 1 0 49 2 1 201 1 2 154 0 6 59 2 1 60 7 8 96 14 15 30 0 4 254 2 0 63 0 1 37 0 2 128 0 1 104 3 4 128 1 5 129 0 5 208 19 149 6 0 2 343 10 5 50 1 2 9 3 0 24 1 0 4 21 16 11 2 0 43 1 0 8 2 1 16 1 0 44 1 0 15 3 0 17 51 37 19 2 1 21 1 0 13 1 0 15 chain 5006 chr1 248956422 + 117532226 117532307 MER20 218 + 36 115 85630 55 6 5 15 1 0 4 chain 20036 chr1 248956422 + 117548429 117548638 AluYa5 310 + 91 300 56335 209 chain 26701 chr1 248956422 + 117648680 117648991 L1PA5 6144 + 5833 6144 46680 311 chain 6249 chr1 248956422 + 117709752 117709857 MER53 195 - 89 195 80178 25 18 19 62 chain 25997 chr1 248956422 + 117716051 117716405 THE1B 368 + 0 368 47720 44 0 15 14 0 1 33 0 16 53 1 0 89 15 1 25 3 0 77 chain 122867 chr1 248956422 + 117716405 117717980 THE1B-int 1605 + 0 1605 15042 423 32 58 130 16 17 587 0 1 120 0 1 32 11 12 224 chain 26812 chr1 248956422 + 117717982 117718337 THE1B 368 + 2 368 46520 42 0 15 116 1 0 116 3 0 77 chain 123538 chr1 248956422 + 117718938 117720673 L1PBa 3878 + 187 1928 14865 26 1 0 8 18 16 121 17 11 6 0 7 140 1 0 14 0 1 45 6 5 376 5 9 8 1 0 14 0 4 60 9 14 97 0 1 376 0 1 4 1 0 54 10 8 135 6 5 131 1 0 44 chain 536666 chr1 248956422 + 117720673 117726832 L1PA4 6152 + 0 6152 1525 315 2 1 50 16 18 81 0 3 107 0 3 55 0 2 199 17 0 313 10 11 306 0 1 3860 2 1 826 chain 267290 chr1 248956422 + 117726854 117730585 L1PB1 5432 + 1704 5422 7780 144 1 0 371 6 8 40 0 3 229 2 0 47 0 4 68 11 7 60 6 1 121 4 0 35 1 0 49 0 3 165 13 4 118 0 23 36 1 2 122 1 0 3 0 9 102 17 17 241 7 1 153 0 1 730 3 0 35 0 6 152 0 1 180 2 1 5 0 1 92 72 65 9 2 0 52 2 1 15 1 0 45 1 0 15 1 0 5 17 7 18 3 1 5 1 0 14 8 6 12 0 1 5 1 0 21 1 0 13 1 0 18 chain 28164 chr1 248956422 + 117748382 117748786 MSTA 426 + 0 408 44610 26 0 1 94 19 18 59 1 0 8 2 8 30 1 0 164 chain 171251 chr1 248956422 + 117843806 117846559 L1PA13 3608 + 90 2509 11036 14 11 9 25 2 0 10 1 0 15 1 0 14 3 0 23 30 18 70 1 0 4 2 1 96 11 12 15 1 0 12 2 1 16 2 0 16 15 11 9 1 0 17 6 4 14 2 0 16 1 0 99 2 0 450 0 3 22 2 1 32 2 3 103 23 21 9 0 2 5 0 1 111 2 0 7 0 2 153 8 7 86 305 0 114 1 0 179 1 0 15 1 5 62 0 3 156 1 2 228 1 2 4 1 0 90 chain 5052 chr1 248956422 + 118049520 118049584 L1MA8 2339 + 115 179 85402 64 chain 51561 chr1 248956422 + 118049752 118050448 MER50 708 + 0 686 29013 38 27 22 43 0 1 46 2 0 5 0 1 132 3 0 118 1 0 75 1 0 205 chain 153772 chr1 248956422 + 118063029 118064733 L1PA4 6152 + 4434 6138 12123 1704 chain 3288 chr1 248956422 + 118178163 118178200 MADE1 96 - 59 96 97126 37 chain 3132 chr1 248956422 + 118178721 118178760 L1MA4 2864 + 991 1037 98528 33 0 7 6 chain 30584 chr1 248956422 + 118186798 118187261 LTR12F 595 + 0 500 41486 57 0 4 42 0 1 37 6 4 32 0 8 21 0 9 35 1 25 82 7 8 25 1 0 19 4 5 37 8 0 10 0 1 5 1 0 33 chain 12162 chr1 248956422 + 118205819 118206057 Tigger3c 601 + 364 601 66545 106 6 5 43 36 35 14 12 13 21 chain 431609 chr1 248956422 + 118226112 118231396 HERV9-int 5642 + 9 5278 4727 41 0 1 378 0 5 6 6 1 258 22 0 17 6 0 34 0 3 20 0 1 73 6 4 261 1 0 5 0 2 5 4 1 86 0 2 37 0 1 366 2 1 100 7 8 738 1 0 16 0 2 5 11 9 877 0 1 483 0 5 75 0 2 1176 8 11 104 1 0 48 chain 41575 chr1 248956422 + 118232872 118233433 LTR12F 595 + 0 595 33641 79 2 1 24 6 41 32 0 8 25 14 5 154 0 1 225 chain 45591 chr1 248956422 + 118243415 118244033 LTR71B 605 + 0 605 31267 126 18 22 200 18 0 229 0 1 27 chain 549137 chr1 248956422 + 118280887 118286905 L1PA2 6032 + 5 6024 803 67 0 1 695 4 0 2364 1 0 428 2 1 664 0 4 136 2 0 811 0 4 844 chain 160492 chr1 248956422 + 118313181 118314974 L1PA5 6144 + 4340 6135 11719 223 1 0 205 0 4 1226 1 0 137 chain 479376 chr1 248956422 + 118349384 118354902 L1PA5 6144 + 614 6144 3650 398 0 1 402 0 5 1340 0 2 414 1 0 506 1 0 547 0 1 14 0 1 1565 0 2 101 6 8 223 chain 41722 chr1 248956422 + 118377755 118378316 MSTA-int 1630 + 1060 1625 33536 56 10 11 43 13 16 439 chain 3318 chr1 248956422 + 118404340 118404388 L1MEb 951 + 654 703 96858 31 1 2 16 chain 353994 chr1 248956422 + 118404942 118409315 L1PA8 5853 + 1505 5853 5868 524 0 1 79 4 3 6 0 1 110 0 1 477 0 9 149 0 2 1342 0 1 160 1 0 212 0 1 299 40 10 118 3 1 166 1 3 196 1 0 186 1 0 48 2 0 68 2 1 13 2 1 47 2 1 13 8 7 38 1 0 54 chain 19161 chr1 248956422 + 118429110 118429347 L1PA5 6144 + 5901 6138 57388 237 chain 58293 chr1 248956422 + 118438244 118438898 L1PA5 6144 + 5216 5870 26868 654 chain 61060 chr1 248956422 + 118456445 118457460 L1PB1 5432 + 4446 5422 26090 184 4 0 172 1 0 301 1 2 9 7 0 10 0 4 8 1 0 10 39 32 39 9 8 10 2 1 22 106 87 25 1 0 22 1 0 12 7 6 12 chain 56043 chr1 248956422 + 118475752 118476625 LTR12D 1347 + 405 1347 27550 68 78 0 62 2 33 82 1 0 44 0 17 23 0 1 83 1 2 32 1 0 170 4 0 14 23 22 24 0 102 106 0 1 4 1 2 50 chain 1436 chr1 248956422 + 118475820 118475855 LTR12D 1347 + 623 658 77833 35 chain 60933 chr1 248956422 + 118496864 118497541 L1PA5 6144 + 5460 6137 26129 677 chain 55370 chr1 248956422 + 118522016 118522634 L1PA3long 6157 + 3058 3676 27754 618 chain 427712 chr1 248956422 + 118543366 118548622 L1PA6 6164 + 851 6161 4781 403 9 8 755 0 1 109 0 1 85 0 2 111 2 3 32 0 2 678 0 1 131 0 1 15 0 1 76 2 5 34 1 0 225 4 1 321 0 1 25 1 0 62 1 0 31 0 2 205 2 3 196 6 38 187 6 20 684 3 0 6 5 8 123 0 1 710 3 0 7 chain 99776 chr1 248956422 + 118549365 118551050 L1PA14 3548 + 99 1497 18324 49 4 0 69 1 0 20 3 2 19 17 15 26 2 0 28 0 2 6 14 7 49 1 0 12 3 0 14 10 6 34 1 0 30 2 0 121 2 0 108 262 1 137 8 12 613 9 7 11 chain 23469 chr1 248956422 + 118551609 118551862 L1PA2 6032 + 5775 6028 51634 253 chain 252592 chr1 248956422 + 118575347 118578097 L1PA2 6032 + 3262 6012 8162 2750 chain 5813 chr1 248956422 + 118635033 118635119 L1PBa 3878 + 499 584 81858 19 6 5 61 chain 515719 chr1 248956422 + 118637753 118643643 L1PA4 6152 + 1 5881 2483 1035 1 0 136 1 4 727 1 0 1934 0 7 6 24 2 86 0 1 419 0 2 940 0 1 580 chain 41962 chr1 248956422 + 118647682 118648267 LTR12 884 + 4 884 33377 21 1 0 49 0 132 134 4 5 20 0 22 248 0 3 39 17 155 52 chain 20171 chr1 248956422 + 118654485 118654711 L1PA4 6152 + 4125 4351 56168 226 chain 41736 chr1 248956422 + 118654712 118655170 L1PA4 6152 + 4356 4814 33528 458 chain 27720 chr1 248956422 + 118656211 118656563 THE1B 368 + 0 368 45290 44 1 16 108 1 0 131 0 2 67 chain 40432 chr1 248956422 + 118680331 118680790 L1PA5 6144 + 3806 4267 34360 144 0 2 315 chain 270313 chr1 248956422 + 118694626 118697732 L1PA5 6144 + 3034 6143 7699 640 3 1 982 0 1 501 4 1 82 0 1 54 0 4 372 0 4 457 2 0 9 chain 107662 chr1 248956422 + 118707268 118708481 L1PA5 6144 + 2169 3381 17370 1033 1 0 179 chain 97521 chr1 248956422 + 118721050 118722133 L1PA4 6152 + 4271 5354 18584 1083 chain 149824 chr1 248956422 + 118725699 118727569 L1PA8 5853 + 3990 5853 12360 225 5 3 112 8 7 656 0 1 15 2 0 555 1 0 44 2 0 6 0 4 60 2 1 9 9 8 44 3 2 18 1 0 93 chain 34513 chr1 248956422 + 118735879 118736253 L1PA3long 6157 + 5779 6153 38343 374 chain 76182 chr1 248956422 + 118761226 118762149 L1PA7 6471 + 5541 6468 22519 75 1 4 89 0 1 426 2 0 251 0 2 79 chain 14809 chr1 248956422 + 118774360 118774517 L1PA2 6032 + 5673 5830 62516 157 chain 3485 chr1 248956422 + 118806298 118806349 MER33 330 + 175 229 95341 14 1 4 36 chain 550446 chr1 248956422 + 118831438 118837580 L1PA3long 6157 + 5 6157 712 747 0 4 2009 1 2 1525 0 2 1251 0 1 357 1 2 139 0 1 112 chain 566295 chr1 248956422 + 118852351 118858380 L1HS 6032 + 1 6030 55 6029 chain 17224 chr1 248956422 + 118938901 118939124 L1PA16 3655 + 3270 3491 59552 20 2 0 201 chain 3670 chr1 248956422 + 118957987 118958052 MER96B 391 + 97 154 93834 39 2 0 6 1 0 4 5 0 8 chain 536829 chr1 248956422 + 119020633 119026645 L1PA3long 6157 + 0 6157 1518 152 0 1 188 18 31 148 1 0 261 0 128 920 1 0 461 0 4 1767 0 1 1015 0 6 918 1 0 6 0 1 136 6 0 13 chain 25045 chr1 248956422 + 119062545 119062897 THE1A 353 + 0 353 49196 25 2 3 79 2 1 61 11 12 21 1 0 98 0 1 52 chain 128384 chr1 248956422 + 119062906 119064481 THE1A-int 1579 + 9 1574 14236 256 0 2 178 0 1 28 23 8 419 1 0 142 0 1 239 22 23 167 0 1 100 chain 25347 chr1 248956422 + 119064486 119064831 THE1A 353 + 0 353 48714 25 2 3 83 1 0 15 0 5 71 1 0 62 5 9 80 chain 11931 chr1 248956422 + 119074773 119074958 L1PB4 2604 + 2376 2552 66943 10 2 0 58 16 9 99 chain 8179 chr1 248956422 + 119129233 119129368 MLT1A0 366 + 211 349 74467 29 12 13 61 3 5 30 chain 25338 chr1 248956422 + 119161788 119162066 L1PA2 6032 + 5754 6032 48732 278 chain 104327 chr1 248956422 + 119171394 119172711 LTR12C 1709 + 30 1709 17779 237 30 29 42 10 53 73 13 14 170 0 278 145 0 47 106 11 4 32 0 3 298 1 0 66 1 0 82 chain 120165 chr1 248956422 + 119178884 119180382 LTR12C 1709 + 0 1698 15512 64 0 1 198 1 0 75 10 53 73 3 4 251 0 118 238 0 47 102 11 4 330 1 0 63 5 4 73 chain 99869 chr1 248956422 + 119200571 119201953 L1PA7 6471 + 5060 6450 18314 38 186 189 327 0 3 702 3 5 126 chain 153901 chr1 248956422 + 119211610 119213515 L1PA8 5853 + 3847 5775 12116 42 2 1 14 0 2 10 0 1 84 0 1 48 0 4 381 0 18 556 0 5 70 19 19 461 1 0 45 2 0 72 1 0 11 2 1 47 2 1 19 1 0 15 chain 25906 chr1 248956422 + 119289118 119289488 THE1C 375 + 0 371 47857 101 3 4 15 3 0 22 8 12 29 1 2 5 1 0 159 1 0 22 chain 31210 chr1 248956422 + 119292686 119293153 MLT2A1 477 + 0 459 40966 168 5 2 11 0 1 21 0 2 56 6 13 12 0 1 96 0 2 6 4 0 9 30 16 43 chain 5657 chr1 248956422 + 119307124 119307319 MLT2C1 407 + 114 320 82526 25 29 30 26 1 0 35 64 75 15 chain 93440 chr1 248956422 + 119333581 119335304 LTR12C 1709 + 0 1709 19123 41 0 4 6 26 33 109 72 73 11 0 4 8 3 0 49 0 43 82 5 8 68 0 1 134 7 235 162 0 47 90 24 0 16 11 4 270 317 0 123 5 4 84 chain 27710 chr1 248956422 + 119334791 119335092 AluYg6 310 + 0 298 45301 131 3 0 167 chain 194256 chr1 248956422 + 119497653 119500000 L1P1 4361 + 1 2328 9913 201 2 0 78 4 0 294 4 3 212 0 3 36 17 0 1041 1 2 457 chain 336618 chr1 248956422 + 119500000 119503800 L1PA4 6152 + 2334 6151 6121 96 0 4 730 1 0 675 1 0 2244 0 15 53 chain 337870 chr1 248956422 + 119521857 119525813 L1PA5 6144 + 2187 6142 6112 483 21 16 10 0 5 1070 0 1 896 0 1 621 13 13 681 6 0 14 1 8 129 4 0 7 chain 500439 chr1 248956422 + 119573878 119580346 L1PA6 6164 + 0 6160 3113 213 0 1 20 19 20 133 26 25 37 24 16 104 1 0 216 2 19 181 11 5 82 0 2 909 0 1 38 8 3 123 0 3 196 2 0 75 0 1 98 2 1 675 313 0 377 0 2 1073 2 1 478 0 1 331 0 1 385 3 2 160 7 8 144 chain 20087 chr1 248956422 + 119704778 119704989 AluYg6 310 + 93 304 56274 211 chain 141315 chr1 248956422 + 119705569 119707144 L1PA4 6152 + 4566 6143 12997 474 0 1 599 0 2 118 0 1 137 1 0 107 1 0 138 chain 2842 chr1 248956422 + 119815664 119815696 MER3 215 - 135 167 101288 32 chain 19570 chr1 248956422 + 119852916 119853156 L1PA6 6164 + 5921 6162 56933 90 1 2 149 chain 45946 chr1 248956422 + 119854947 119855505 PABL_A 660 + 0 652 31082 83 0 2 5 9 0 189 0 101 272 chain 86550 chr1 248956422 + 119875135 119876152 L1PA7 6471 + 5024 6044 20311 595 1 4 421 chain 6478 chr1 248956422 + 119900404 119900509 MER3 215 + 9 121 79414 24 16 23 65 chain 25181 chr1 248956422 + 120000885 120001235 THE1A 353 + 0 353 48987 88 8 10 12 1 0 61 0 1 128 7 8 45 chain 114465 chr1 248956422 + 120001502 120002960 HERVL-int 5654 + 4184 5649 16479 394 0 12 359 1 4 50 16 6 167 1 0 4 7 10 35 8 5 43 0 3 373 chain 29258 chr1 248956422 + 120002965 120003362 MLT2A1 477 + 0 395 42951 18 2 0 124 28 32 211 4 0 10 chain 4731 chr1 248956422 + 120010772 120011062 L1MB7 1623 + 1331 1583 87075 5 1 0 9 2 1 17 12 18 41 1 0 7 172 131 23 chain 3253 chr1 248956422 + 120048846 120048882 MIRb 242 + 164 200 97451 36 chain 45696 chr1 248956422 + 120181137 120181769 LTR10E 629 + 0 627 31209 18 1 0 142 6 8 128 2 1 27 1 0 46 7 6 185 30 28 33 1 0 5 chain 12128 chr1 248956422 + 120189680 120189926 L1MC1 2226 + 641 915 66607 71 1 0 42 14 15 47 48 76 23 chain 49730 chr1 248956422 + 120260644 120261268 L1PA7 6471 + 5843 6467 29669 296 1 0 174 2 0 6 6 8 78 5 6 56 chain 57723 chr1 248956422 + 120317569 120318790 L1P4 1494 + 426 1410 27042 28 1 0 14 311 0 72 6 7 217 12 82 74 11 10 118 1 0 5 1 5 11 4 0 50 3 1 5 0 2 99 3 7 80 0 1 36 1 0 5 38 40 15 chain 49815 chr1 248956422 + 120343528 120344084 L1PA3long 6157 + 5601 6156 29632 303 1 0 252 chain 44010 chr1 248956422 + 120374902 120375447 MLT2A2 560 + 14 560 32122 192 0 1 353 chain 21046 chr1 248956422 + 120385523 120385886 THE1C 375 + 0 350 55067 15 2 0 48 31 23 93 1 0 6 0 2 26 19 21 13 8 2 101 chain 86273 chr1 248956422 + 120424750 120425723 LTR5_Hs 974 + 0 974 20365 773 0 1 200 chain 55853 chr1 248956422 + 120457081 120457726 L1PA4 6152 + 5492 6138 27606 579 5 6 61 chain 168525 chr1 248956422 + 120478168 120480714 L1P2 5180 + 2 2222 11183 148 2 1 47 8 7 39 8 7 23 2 0 6 3 4 161 20 1 69 0 1 49 1 0 222 0 15 101 1 0 10 1 4 39 0 1 50 2 0 1074 331 12 129 chain 500328 chr1 248956422 + 120480723 120486850 L1PA6 6164 + 2 6151 3117 117 14 0 82 0 1 307 2 1 423 0 25 79 0 1 4 7 6 129 0 9 1146 1 2 855 0 1 714 19 21 252 13 8 1129 0 2 144 0 1 541 1 6 6 5 0 137 chain 3042 chr1 248956422 + 120531336 120531370 MER3 215 - 133 167 99399 34 chain 4881 chr1 248956422 + 120571123 120571176 U2 167 + 0 53 86250 53 chain 24783 chr1 248956422 + 120586475 120586758 AluY 311 + 3 287 49615 130 1 0 44 0 1 31 0 1 77 chain 358844 chr1 248956422 + 120602122 120607895 L1PB1 5432 + 637 5420 5810 291 0 4 465 1 0 6 15 0 176 20 0 69 295 3 543 0 4 19 0 12 209 0 1 55 6 0 56 733 158 111 1 0 4 1 2 61 0 3 260 0 1 64 1 0 145 7 6 103 0 3 96 0 2 163 6 0 895 2 0 185 16 15 276 83 14 15 1 0 26 4 0 9 2 0 52 1 0 17 1 0 45 1 0 15 3 0 6 16 6 13 9 7 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 21333 chr1 248956422 + 120604630 120604860 L1PA3long 6157 + 5927 6157 54722 230 chain 527174 chr1 248956422 + 120673299 120679428 L1PA5 6144 + 3 6144 1948 92 15 29 603 2 0 152 0 1 152 1 2 820 0 1 1820 1 0 139 1 0 36 0 1 57 0 1 286 0 2 150 0 4 437 14 0 407 0 2 333 0 3 352 1 0 96 1 2 161 chain 6139 chr1 248956422 + 120683811 120683915 MER96B 391 - 65 168 80572 35 3 0 6 0 4 14 8 6 38 chain 47286 chr1 248956422 + 120765563 120766147 L1PA8 5853 + 5277 5853 30543 287 1 0 44 2 0 70 2 1 9 1 0 52 2 1 19 1 0 87 1 0 6 chain 46889 chr1 248956422 + 120791280 120791801 L1PA5 6144 + 5617 6138 30702 521 chain 55853 chr1 248956422 + 120819797 120820442 L1PA4 6152 + 5492 6138 27605 579 5 6 61 chain 3092 chr1 248956422 + 120842674 120842706 MER51D 577 + 537 569 98855 32 chain 103638 chr1 248956422 + 120902435 120903679 L1PA6 6164 + 4902 6146 17859 141 1 0 275 0 4 75 0 1 296 5 1 451 chain 45910 chr1 248956422 + 120931521 120932027 L1PA3long 6157 + 5646 6152 31099 506 chain 36746 chr1 248956422 + 120932987 120933579 MER4D1 891 + 0 635 36925 175 21 4 19 0 13 111 5 6 51 11 17 20 8 28 85 0 12 11 14 19 27 0 7 20 4 0 10 chain 8271 chr1 248956422 + 120935466 120935570 LTR24C 604 + 65 169 74237 104 chain 6148 chr1 248956422 + 120945288 120945362 tRNA-Asn-AAC 74 + 0 74 80542 74 chain 31606 chr1 248956422 + 120950610 120951050 MER51D 577 + 104 558 40657 26 0 5 15 1 0 172 0 5 63 1 0 45 7 17 47 1 0 8 6 4 25 2 1 21 chain 70500 chr1 248956422 + 121026349 121027701 L1PA17 2846 + 1625 2675 23867 195 361 51 28 0 1 211 2 1 98 0 1 84 0 13 60 3 6 142 14 8 9 1 0 59 2 0 8 1 3 29 1 0 17 1 0 26 chain 6167 chr1 248956422 + 121045506 121045586 MADE1 96 + 0 96 80460 32 1 17 47 chain 41983 chr1 248956422 + 121078526 121079131 MER4B 649 + 0 633 33366 25 1 0 132 0 42 17 0 2 8 15 0 39 8 0 79 7 31 46 2 0 5 13 0 138 1 0 69 chain 40263 chr1 248956422 + 121099942 121100510 LTR61 567 + 0 558 34466 17 10 0 38 17 11 156 7 10 42 0 6 216 0 1 21 3 0 10 2 1 29 chain 12554 chr1 248956422 + 121176475 121176663 Tigger1 2417 + 2221 2404 65893 35 9 8 73 0 1 15 1 0 9 4 0 42 chain 42455 chr1 248956422 + 121230691 121231184 L1PA7 6471 + 5966 6459 33091 493 chain 8326 chr1 248956422 + 121234833 121234933 MSTD 398 + 220 320 74094 100 chain 24785 chr1 248956422 + 121359845 121360164 LTR12 884 + 2 884 49609 23 9 8 22 0 41 171 0 523 94 chain 541317 chr1 248956422 + 121401449 121407465 L1PA3long 6157 + 0 6156 1252 151 0 1 103 0 1 511 11 139 2259 0 1 1537 0 2 252 0 6 343 0 1 849 chain 4381 chr1 248956422 + 121423878 121423926 LTR47A 437 + 327 375 88999 48 chain 35030 chr1 248956422 + 121436111 121436577 L1MA1 4479 + 242 707 37999 37 2 0 74 0 1 92 11 0 136 0 10 71 0 1 43 chain 516691 chr1 248956422 + 121477131 121483275 L1PA5 6144 + 0 6144 2438 685 0 1 444 1 15 79 5 6 178 0 5 21 0 2 820 0 2 54 1 0 749 0 4 99 1 0 6 0 1 131 24 6 194 1 0 142 10 0 56 1 2 521 0 1 1063 0 1 471 1 0 4 0 1 368 3 1 11 chain 17236 chr1 248956422 + 121499782 121500000 L1P1 4361 + 3587 3805 59543 15 9 10 26 1 0 167 chain 192702 chr1 248956422 + 121500000 121502329 L1PA6 6164 + 3825 6159 9986 166 1 0 4 0 1 6 3 1 30 0 1 614 0 3 17 4 4 10 0 1 108 0 1 523 1 0 88 0 1 20 0 1 734 chain 33233 chr1 248956422 + 121510042 121510491 LTR12_ 688 + 0 651 39317 90 0 66 7 1 0 279 10 13 28 6 140 28 chain 3194 chr1 248956422 + 121514114 121514150 LTR12_ 688 + 383 419 97947 36 chain 540806 chr1 248956422 + 121574291 121580418 L1PA3long 6157 + 0 6157 1293 1081 1 6 75 0 3 1164 0 2 24 0 5 322 0 2 483 0 2 97 0 4 467 0 1 206 0 1 1343 5 9 593 8 9 258 chain 197028 chr1 248956422 + 121734418 121736567 L1HS 6032 + 3883 6032 9809 2149 chain 21353 chr1 248956422 + 122109547 122109776 AluYa5 310 + 80 310 54698 16 0 1 213 chain 45348 chr1 248956422 + 122229390 122229886 L1HS 6032 + 5536 6032 31394 496 chain 470037 chr1 248956422 + 125007739 125013508 L1PA3long 6157 + 6 6150 3856 122 1 15 11 14 1 18 3 0 5 0 3 28 0 1 223 12 14 329 0 128 838 0 1 14 0 20 920 1 0 331 1 0 44 0 1 297 0 1 684 2 1 171 1 0 934 0 1 315 167 390 283 chain 516864 chr1 248956422 + 125015252 125021199 L1PA3long 6157 + 0 6153 2425 152 28 29 586 11 139 553 3 4 798 1 70 378 0 5 656 1 2 1811 0 1 969 chain 14988 chr1 248956422 + 125103240 125103487 THE1B 368 + 84 341 62280 85 1 0 12 0 1 16 41 51 92 chain 33314 chr1 248956422 + 125111196 125111554 L1HS 6032 + 5043 5401 39246 358 chain 508601 chr1 248956422 + 125122961 125129009 L1PA4 6152 + 1 6081 2818 116 2 1 10 1 15 437 1 0 40 1 0 59 0 1 1255 0 1 9 0 12 1227 0 1 442 0 4 1848 0 1 231 0 1 369 chain 19790 chr1 248956422 + 143285025 143285336 THE1B 368 + 6 341 56691 38 0 15 110 1 0 29 42 52 91 chain 16582 chr1 248956422 + 143330367 143330616 L1PA8 5853 + 5608 5853 60282 71 21 19 42 2 1 19 4 3 90 chain 56111 chr1 248956422 + 143349896 143350572 L1PA6 6164 + 5479 6162 27531 15 0 4 333 0 1 315 0 2 13 chain 3539 chr1 248956422 + 143455110 143455151 MER6B 211 - 3 44 94949 41 chain 12614 chr1 248956422 + 143575525 143575802 LTR12C 1709 + 932 1183 65779 10 1 0 111 68 0 33 30 73 24 chain 995 chr1 248956422 + 143575673 143575705 LTR12C 1709 + 651 683 89147 32 chain 3060 chr1 248956422 + 143584700 143584737 tRNA-Gln-CAG 43 + 0 37 99222 37 chain 195182 chr1 248956422 + 143602534 143604901 L1P2 5180 + 863 3225 9877 285 0 1 61 22 23 9 1 0 71 6 1 35 7 8 83 1 0 325 0 1 58 4 3 1362 1 0 36 chain 20718 chr1 248956422 + 143619696 143619936 L1PA6 6164 + 5921 6161 55471 240 chain 46078 chr1 248956422 + 143621723 143622376 PABL_A 660 + 1 652 31026 79 19 12 142 44 0 9 0 44 44 0 5 316 chain 169993 chr1 248956422 + 143637104 143639612 SVA_E 1901 + 1 1901 11106 152 1 0 488 0 40 136 1 0 19 1 0 87 102 0 55 78 0 255 465 0 668 chain 3627 chr1 248956422 + 143637997 143638042 SVA_E 1901 + 927 972 56000 45 chain 4455 chr1 248956422 + 143638042 143638091 SVA_E 1901 + 923 972 34527 49 chain 7091 chr1 248956422 + 143638146 143638224 SVA_E 1901 + 1027 1104 34527 68 1 0 9 chain 5731 chr1 248956422 + 143638479 143638540 SVA_E 1901 + 1106 1167 78430 61 chain 779 chr1 248956422 + 143638576 143638601 SVA_E 1901 + 1233 1258 85431 25 chain 1810 chr1 248956422 + 143638619 143638672 SVA_E 1901 + 923 976 69706 53 chain 11447 chr1 248956422 + 143638672 143638944 SVA_E 1901 + 927 1155 42195 168 1 0 33 43 0 27 chain 2073 chr1 248956422 + 143638895 143638917 SVA_E 1901 + 931 953 61715 22 chain 71335 chr1 248956422 + 143647318 143648164 L1PA5 6144 + 5039 5872 23688 131 23 8 96 0 1 592 0 1 4 chain 3980 chr1 248956422 + 143691473 143691516 tRNA-Gln-CAG 43 + 0 43 91580 43 chain 6979 chr1 248956422 + 143692951 143693031 HY3 101 + 20 100 77672 80 chain 170982 chr1 248956422 + 143702023 143704149 SVA_D 2077 + 6 2077 11052 15 14 2 535 0 40 127 0 3 33 3 0 16 9 9 132 0 36 64 48 0 16 2 4 42 78 0 144 1 2 162 0 1 4 1 0 583 0 4 97 chain 4111 chr1 248956422 + 143702971 143703019 SVA_D 2077 + 1372 1421 55253 47 0 1 1 chain 6900 chr1 248956422 + 143703079 143703157 SVA_D 2077 + 1129 1207 40057 78 chain 33955 chr1 248956422 + 143733897 143734372 MER51D 577 + 104 577 38741 34 3 7 246 3 0 108 1 0 8 3 1 12 5 6 8 1 0 43 chain 70646 chr1 248956422 + 143809628 143810983 L1PA17 2846 + 1625 2675 23833 195 364 51 28 0 1 211 2 1 98 0 1 85 0 13 59 3 6 142 14 8 9 1 0 59 2 0 8 1 3 29 1 0 17 1 0 26 chain 6167 chr1 248956422 + 143828776 143828856 MADE1 96 + 0 96 80459 32 1 17 47 chain 41459 chr1 248956422 + 143865931 143866528 MER4B 649 + 0 633 33703 25 1 0 132 0 42 18 0 2 11 8 1 34 8 0 79 7 31 46 2 0 5 13 0 138 1 0 69 chain 39631 chr1 248956422 + 143887378 143887946 LTR61 567 + 0 558 34939 17 10 0 38 17 11 156 7 10 17 0 1 7 1 0 17 0 6 216 0 1 21 3 0 10 2 1 29 chain 12554 chr1 248956422 + 143964122 143964310 Tigger1 2417 + 2221 2404 65892 35 9 8 73 0 1 15 1 0 9 4 0 42 chain 42416 chr1 248956422 + 144018294 144018787 L1PA7 6471 + 5966 6459 33118 493 chain 8326 chr1 248956422 + 144022455 144022555 MSTD 398 + 220 320 74093 100 chain 29692 chr1 248956422 + 144082181 144082510 L1PA5 6144 + 5796 6125 42377 329 chain 34078 chr1 248956422 + 144117893 144118335 L1PA7 6471 + 6025 6467 38646 112 0 1 167 6 5 157 chain 65567 chr1 248956422 + 144129612 144130362 L1PA5 6144 + 5399 6142 25061 737 7 0 6 chain 16582 chr1 248956422 + 144155940 144156189 L1PA8 5853 + 5608 5853 60281 71 21 19 42 2 1 19 4 3 90 chain 55766 chr1 248956422 + 144175472 144176148 L1PA6 6164 + 5479 6162 27641 15 0 4 333 0 1 315 0 2 13 chain 3539 chr1 248956422 + 144280731 144280772 MER6B 211 - 3 44 94948 41 chain 21721 chr1 248956422 + 144366055 144366340 L1PA16 3655 + 3308 3590 54204 270 3 0 12 chain 154161 chr1 248956422 + 144390276 144392017 L1PA5 6144 + 4400 6142 12102 222 1 0 448 0 1 222 0 1 848 chain 13818 chr1 248956422 + 144414778 144415001 LOR1b 457 + 0 257 63848 24 6 17 50 4 3 25 0 13 16 3 1 21 0 13 74 chain 7008 chr1 248956422 + 144419266 144419340 tRNA-Asn-AAC 74 + 0 74 77579 74 chain 201002 chr1 248956422 + 144430430 144433537 L1P2 5180 + 845 3231 9685 223 8 9 389 0 1 57 0 1 304 0 1 12 736 0 76 0 1 515 0 3 91 0 1 264 0 4 298 0 1 107 0 1 27 chain 13814 chr1 248956422 + 144441927 144442106 L1PA6 6164 + 5921 6099 63855 90 1 2 80 2 0 6 chain 50527 chr1 248956422 + 144444186 144444841 PABL_A 660 + 1 652 29373 79 14 6 4 1 0 240 1 6 36 1 0 36 0 1 243 chain 2944 chr1 248956422 + 144520909 144520954 MADE1 96 + 50 96 100463 32 1 2 12 chain 39992 chr1 248956422 + 144549171 144549598 L1HS 6032 + 5605 6032 34666 427 chain 33067 chr1 248956422 + 144565137 144565942 MER51D 577 + 107 569 39459 23 0 5 9 2 1 216 336 0 36 7 0 102 1 0 8 3 1 28 2 1 32 chain 28303 chr1 248956422 + 144581148 144581511 THE1B 368 + 0 368 44406 27 0 1 9 0 5 120 3 2 204 chain 14643 chr1 248956422 + 144587726 144587911 AluSp 311 + 117 300 62743 15 2 0 168 chain 102312 chr1 248956422 + 144605422 144606665 L1PA6 6164 + 4902 6146 18032 141 1 0 271 1 5 78 0 1 296 5 1 89 0 1 361 chain 5266 chr1 248956422 + 144694898 144694992 MER20 218 + 41 136 84357 42 23 24 29 chain 505326 chr1 248956422 + 144965151 144970658 L1PA2 6032 + 0 6032 2953 50 0 1 45 0 524 698 1 0 755 0 1 3105 1 0 133 1 0 704 0 2 14 chain 20577 chr1 248956422 + 144979528 144979944 MSTB 430 + 0 430 55672 25 2 1 91 101 111 28 2 3 48 2 7 95 5 4 17 chain 145224 chr1 248956422 + 144990465 144992335 LTR12C 1709 + 0 1709 12673 103 6 5 201 0 1 4 1 0 424 160 0 98 2 1 274 1 0 6 2 0 107 0 4 481 chain 8323 chr1 248956422 + 144991204 144991304 LTR12C 1709 + 897 997 53519 100 chain 4361 chr1 248956422 + 144991304 144991364 LTR12C 1709 + 837 897 47480 60 chain 28132 chr1 248956422 + 145030353 145030714 L1PA5 6144 + 5783 6144 44666 5 3 0 59 0 7 37 2 0 241 3 1 11 chain 14372 chr1 248956422 + 145088976 145089182 MER2 342 + 140 332 63081 87 4 0 68 8 0 7 2 0 30 chain 5614 chr1 248956422 + 145132163 145132243 MADE1 96 - 0 96 82735 38 4 20 38 chain 6357 chr1 248956422 + 145157156 145157229 tRNA-Val-GTG 73 + 0 73 79819 73 chain 4504 chr1 248956422 + 145176940 145177011 tRNA-Glu-GAA 70 + 0 70 88302 40 10 9 21 chain 23014 chr1 248956422 + 145190114 145190416 AluSp 311 + 0 296 52336 48 16 10 238 chain 50602 chr1 248956422 + 145217465 145218020 L1PA3long 6157 + 5601 6156 29349 555 chain 22057 chr1 248956422 + 145231639 145231924 L1PA16 3655 + 3308 3590 53754 270 3 0 12 chain 153311 chr1 248956422 + 145258823 145260563 L1PA5 6144 + 4400 6141 12159 222 1 0 448 0 1 222 0 1 847 chain 13284 chr1 248956422 + 145281115 145281275 U1 164 + 0 159 64652 45 1 0 114 chain 7139 chr1 248956422 + 145287765 145287839 tRNA-Asn-AAC 74 + 0 74 77136 74 chain 198782 chr1 248956422 + 145395708 145398813 L1P2 5180 + 845 3231 9752 90 0 6 3 6 0 124 8 9 389 0 1 57 0 1 304 0 1 6 734 0 82 0 1 515 0 3 91 0 1 264 0 4 298 0 1 107 0 1 27 chain 14750 chr1 248956422 + 145407194 145407371 L1PA6 6164 + 5921 6099 62599 90 1 2 86 chain 49596 chr1 248956422 + 145409348 145410000 PABL_A 660 + 1 654 29728 79 13 6 4 1 0 240 1 6 36 1 0 36 0 5 241 chain 4111 chr1 248956422 + 145459657 145459700 tRNA-Gln-CAG 43 + 0 43 90701 43 chain 5983 chr1 248956422 + 145461164 145461231 HY3 101 + 33 100 81150 67 chain 7085 chr1 248956422 + 145542839 145543009 L1PB1 5432 + 5238 5397 77310 43 1 0 13 29 17 15 8 14 6 2 0 19 4 3 24 1 0 5 chain 3766 chr1 248956422 + 145563245 145563288 tRNA-Gln-CAG 43 + 0 43 93107 43 chain 199719 chr1 248956422 + 145581420 145584520 L1P2 5180 + 845 3231 9727 223 8 9 389 0 1 57 0 1 304 0 1 6 729 0 82 0 1 609 0 1 262 0 4 161 0 3 136 0 1 107 0 1 27 chain 7508 chr1 248956422 + 145604809 145604960 L1MA8 2339 + 2123 2264 76110 38 4 1 34 30 24 37 1 0 7 chain 122148 chr1 248956422 + 145660121 145661466 L1PA3long 6157 + 4815 6157 15171 291 4 1 1050 chain 4098 chr1 248956422 + 145674370 145674449 Ricksha_c 1012 + 94 168 90796 44 8 7 7 2 0 10 2 0 6 chain 54880 chr1 248956422 + 145726077 145726738 L1PA6 6164 + 5497 6162 27914 197 0 4 464 chain 28539 chr1 248956422 + 145760384 145760733 THE1A 353 + 0 353 44055 111 1 0 26 0 4 60 0 1 151 chain 126502 chr1 248956422 + 145760733 145762295 THE1A-int 1579 + 0 1574 14482 15 0 2 26 1 2 370 1 7 49 0 4 618 6 5 476 chain 10149 chr1 248956422 + 145762312 145762458 THE1A 353 + 207 353 70107 25 1 2 43 6 5 71 chain 130087 chr1 248956422 + 145763900 145765438 SVA_C 1631 + 20 1631 14031 21 0 6 10 13 7 394 0 76 65 0 1 119 3 0 139 29 31 21 1 0 92 1 2 14 1 0 607 2 0 6 chain 47501 chr1 248956422 + 145887842 145888532 LTR66 600 + 6 600 30480 224 0 1 150 71 0 23 1 7 68 4 0 9 30 0 73 0 2 37 chain 51983 chr1 248956422 + 145920322 145920887 L1PA3long 6157 + 5588 6155 28879 109 0 2 456 chain 81897 chr1 248956422 + 145932413 145933382 LTR5_Hs 974 + 0 974 21267 261 18 0 558 1 7 78 0 17 53 chain 6814 chr1 248956422 + 145938888 145938978 MER2 342 + 161 248 78265 10 0 1 39 4 0 37 chain 10849 chr1 248956422 + 146027964 146028090 SVA_A 1864 + 278 404 68776 126 chain 6975 chr1 248956422 + 146035691 146035763 tRNA-Glu-GAG_ 72 + 0 72 77699 72 chain 3638 chr1 248956422 + 146037060 146037098 tRNA-Gly-GGA 38 + 0 38 94122 38 chain 6496 chr1 248956422 + 146038045 146038115 tRNA-His-CAY_ 70 + 0 70 79370 70 chain 4120 chr1 248956422 + 146039400 146039443 tRNA-Lys-AAG 49 + 0 43 90656 43 chain 3766 chr1 248956422 + 146055611 146055654 tRNA-Gln-CAG 43 + 0 43 93106 43 chain 202143 chr1 248956422 + 146128849 146131950 L1P2 5180 + 845 3231 9635 223 8 9 389 0 1 57 0 1 304 0 1 6 727 0 82 0 1 609 0 1 264 0 4 298 0 1 107 0 1 27 chain 26525 chr1 248956422 + 146160328 146160678 THE1A 353 + 0 353 46941 88 8 10 12 1 0 65 0 1 124 0 1 52 chain 113083 chr1 248956422 + 146160945 146162382 HERVL-int 5654 + 4184 5649 16666 394 0 12 359 1 4 50 16 6 167 23 42 8 0 1 46 0 3 373 chain 29619 chr1 248956422 + 146162387 146162807 MLT2A1 477 + 0 407 42461 18 2 0 124 28 32 211 4 0 11 11 0 11 chain 5623 chr1 248956422 + 146170187 146170491 L1MB7 1623 + 1331 1597 82697 5 1 0 9 2 1 17 12 18 41 1 0 7 172 131 37 chain 3253 chr1 248956422 + 146208220 146208256 MIRb 242 + 164 200 97450 36 chain 2929 chr1 248956422 + 146262003 146262038 MLT1M 334 + 195 230 100599 35 chain 21852 chr1 248956422 + 146337062 146337347 L1PA16 3655 + 3308 3590 54035 270 3 0 12 chain 154360 chr1 248956422 + 146361456 146363196 L1PA5 6144 + 4400 6142 12093 222 1 0 153 0 1 294 0 1 222 0 1 848 chain 6709 chr1 248956422 + 146370100 146370174 tRNA-Asn-AAC 74 + 0 74 78614 74 chain 15725 chr1 248956422 + 146376806 146376970 U1 164 + 0 164 61377 164 chain 80676 chr1 248956422 + 146381150 146382090 LTR5_Hs 974 + 0 974 21496 97 0 3 349 0 32 430 1 0 63 chain 43169 chr1 248956422 + 146430101 146430642 MLT2A2 560 + 14 560 32673 192 0 1 343 0 4 6 chain 22572 chr1 248956422 + 146440764 146441152 THE1D 372 + 0 372 53014 56 40 23 87 40 42 16 1 0 148 chain 10775 chr1 248956422 + 146557521 146557744 L1PB1 5432 + 5222 5422 68910 14 1 0 45 10 0 13 17 14 18 9 6 14 2 0 24 1 0 22 1 0 12 1 0 12 1 0 6 chain 8797 chr1 248956422 + 146660227 146660360 L1MC1 2226 + 1918 2047 72992 63 4 2 8 3 1 55 chain 11594 chr1 248956422 + 146681644 146681816 MER58A 224 + 42 215 67581 76 15 16 81 chain 21851 chr1 248956422 + 146687633 146687926 L1PA8 5853 + 5566 5853 54036 42 2 0 70 2 1 10 1 0 51 2 1 19 1 0 93 chain 39699 chr1 248956422 + 146713958 146714460 MER1A 529 + 31 529 34891 237 0 1 189 13 8 63 chain 5141 chr1 248956422 + 146759665 146759802 L1MB3 1562 + 1130 1273 84953 51 60 66 26 chain 72387 chr1 248956422 + 146769793 146770576 L1PA3long 6157 + 3548 4331 23455 783 chain 416396 chr1 248956422 + 146799719 146805177 L1PB1 5432 + 32 5420 4934 113 0 1 244 13 11 5 0 2 649 14 16 333 12 0 80 0 1 109 0 6 18 5 6 115 0 1 190 0 1 339 0 9 217 6 0 98 1 0 22 1 2 222 1 0 172 1 0 52 36 16 493 4 5 32 0 2 118 1 0 105 0 2 113 5 6 4 0 1 665 3 0 183 25 8 19 14 11 102 21 14 138 1 2 10 6 1 20 1 0 11 1 0 11 19 13 42 4 8 16 1 0 44 1 0 11 6 4 15 9 1 15 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 4624 chr1 248956422 + 146841736 146841831 MER5A1 166 + 34 134 87685 33 20 24 31 1 2 10 chain 383448 chr1 248956422 + 146868403 146872517 L1PA2 6032 + 1915 6032 5422 2314 0 4 1650 1 0 149 chain 85005 chr1 248956422 + 146948312 146949300 LTR5_Hs 974 + 0 974 20617 285 1 3 485 0 1 67 29 12 121 chain 475732 chr1 248956422 + 147006520 147012497 L1PA5 6144 + 1 5961 3730 127 2 16 65 13 12 24 74 73 144 36 17 44 1 2 7 0 2 52 1 0 214 0 17 107 1 0 10 1 4 14 25 0 51 2 0 162 13 4 341 0 1 2371 20 22 252 11 8 1133 0 4 238 0 1 421 chain 328437 chr1 248956422 + 147012699 147016632 L1PA6 6164 + 2212 6151 6244 121 0 1 539 2 7 303 10 8 37 2 1 18 1 0 120 1 2 530 0 1 332 0 1 410 2 0 236 1 2 438 0 1 140 0 1 541 1 6 6 5 0 137 chain 127820 chr1 248956422 + 147061315 147062779 SVA_B 1603 + 50 1597 14307 34 0 2 778 1 0 46 5 87 600 chain 534100 chr1 248956422 + 147063913 147070066 L1PA4 6152 + 6 6151 1656 571 1 0 257 17 0 322 0 3 170 0 3 5 27 24 448 0 1 722 0 1 158 0 1 2612 0 4 843 chain 6496 chr1 248956422 + 147073226 147073296 tRNA-His-CAY_ 70 + 0 70 79369 70 chain 39150 chr1 248956422 + 147090581 147091538 L1PB1 5432 + 4741 5324 35249 188 309 0 143 0 1 30 54 11 22 1 0 10 1 0 12 15 9 53 18 16 44 1 0 16 12 0 28 chain 74262 chr1 248956422 + 147103236 147104108 MER11D 897 + 0 897 23013 111 0 1 474 1 24 51 0 1 235 chain 14728 chr1 248956422 + 147122545 147122746 MER4A1 472 + 234 472 62632 80 0 35 45 6 8 70 chain 5618 chr1 248956422 + 147141325 147141386 L1PA16 3655 + 3466 3527 82717 61 chain 28782 chr1 248956422 + 147147588 147147960 MLT2A1 477 + 0 384 43657 142 0 1 26 4 9 28 2 0 18 0 8 152 chain 47290 chr1 248956422 + 147148090 147148680 HERVL-int 5654 + 0 592 30539 52 0 1 41 7 8 490 chain 119966 chr1 248956422 + 147205567 147206938 L1PA5 6144 + 4784 6138 15541 802 2 6 447 22 1 98 chain 2988 chr1 248956422 + 147232165 147232200 MLT1J2 417 + 318 353 99989 35 chain 9747 chr1 248956422 + 147232300 147232471 LTR14B 630 + 0 382 70938 56 0 179 39 31 53 33 0 10 12 chain 144168 chr1 248956422 + 147232475 147234099 SVA_D 2077 + 11 2067 12759 531 0 40 335 0 37 32 0 1 47 1 4 10 1 0 38 1 0 7 0 352 125 1 0 36 0 2 459 chain 46770 chr1 248956422 + 147238795 147239352 LTR6B 557 + 0 557 30742 357 1 2 42 1 0 156 chain 82089 chr1 248956422 + 147240099 147241067 LTR5_Hs 974 + 0 974 21227 250 0 5 557 0 2 97 2 1 62 chain 32041 chr1 248956422 + 147241184 147241596 LTR7 482 + 0 482 40320 68 9 47 138 1 0 11 0 31 91 0 2 94 chain 232714 chr1 248956422 + 147306195 147308806 L1PA4 6152 + 3515 6152 8671 442 0 2 391 0 8 145 1 0 596 0 15 731 0 2 305 chain 292329 chr1 248956422 + 147308818 147312826 L1PA7 6471 + 2670 6468 7059 102 0 6 111 6 10 5 0 1 395 0 6 136 0 3 102 20 30 34 0 1 334 0 2 61 1 0 4 2 15 208 2 1 42 0 4 66 4 0 29 3 5 94 2 1 85 316 2 348 8 78 125 28 1 504 0 3 160 0 6 336 8 6 265 10 0 8 1 20 43 chain 439980 chr1 248956422 + 147316204 147330670 L1PA8A 6298 + 77 6282 4577 21 45 32 18 0 3 6 2 1 13 1 0 6 1 0 12 2 0 11 11 8 13 1 0 8 1 0 5 2 1 9 1 0 8 10 5 6 2 0 49 1 0 16 8 0 76 2 0 18 1 0 11 4 2 77 1 0 32 0 2 24 0 24 24 5 4 155 0 1 323 6 13 26 0 1 74 2 1 48 1 4 100 7 4 68 0 3 247 0 4 52 1 3 138 0 1 325 1 0 117 308 0 73 4 0 70 2 1 5 0 1 26 18 0 61 1732 0 370 1 0 34 19 20 236 0 2 56 8 7 4 0 1 75 2 0 20 6242 0 13 3 14 198 5 6 59 0 4 185 0 1 126 12 7 689 2 1 22 4 9 101 8 25 231 1 2 151 1 2 80 1 2 167 1 4 74 4 6 18 0 1 40 0 1 294 0 2 355 chain 525138 chr1 248956422 + 147342997 147349114 L1PA5 6144 + 3 6141 2041 329 14 15 355 2 1 20 1 0 239 2 3 4 1 0 111 0 3 1077 0 24 197 0 3 155 3 0 406 0 2 217 1 0 12 2 0 341 5 6 129 1 0 270 0 2 423 0 4 75 9 0 982 1 0 733 chain 87546 chr1 248956422 + 147358717 147359999 L1PA10 4194 + 236 1466 20129 6 1 0 8 1 0 22 2 0 9 0 1 4 1 0 8 37 12 8 1 0 21 2 0 21 1 0 7 1 0 7 1 0 10 1 0 7 12 0 16 2 1 84 2 0 97 5 0 299 0 3 50 14 15 514 chain 69577 chr1 248956422 + 147359999 147360921 L1PA7 6471 + 3896 4818 24085 599 96 0 5 0 96 222 chain 135697 chr1 248956422 + 147360921 147362570 L1PA7 6471 + 4822 6470 13466 734 2 2 66 1 0 683 2 1 65 0 1 96 chain 102147 chr1 248956422 + 147375132 147376275 L1PA3long 6157 + 5015 6157 18045 163 2 1 978 chain 540989 chr1 248956422 + 147402384 147408529 L1PA4 6152 + 0 6151 1278 460 6 0 116 1 0 159 0 1 499 0 1 122 0 1 24 0 1 60 7 11 1120 0 3 1089 1 2 2241 0 2 102 1 0 137 chain 549544 chr1 248956422 + 147423218 147429241 L1PA2 6032 + 0 6027 780 820 0 4 733 2 0 1586 0 2 2882 chain 81244 chr1 248956422 + 147442721 147443640 L1PA5 6144 + 4421 5345 21379 433 0 1 442 0 4 44 chain 67783 chr1 248956422 + 147443640 147444418 L1PA5 6144 + 5350 6136 24500 333 0 6 213 0 2 232 chain 71211 chr1 248956422 + 147449598 147450415 L1PA5 6144 + 5302 6131 23713 322 0 1 132 0 1 232 2 12 129 chain 183751 chr1 248956422 + 147459563 147461599 L1PA3long 6157 + 4113 6157 10397 247 0 4 924 0 4 865 chain 48833 chr1 248956422 + 147719810 147720445 MER41B 635 + 0 635 29999 92 1 0 33 1 2 334 0 7 4 8 0 35 0 1 127 chain 23788 chr1 248956422 + 147802848 147803150 AluSp 311 + 11 307 51129 52 10 4 240 chain 3426 chr1 248956422 + 147814705 147814746 MER34C_ 573 + 28 69 95852 41 chain 24220 chr1 248956422 + 147833884 147834284 LTR7 482 + 0 474 50457 69 29 17 15 15 14 17 2 53 39 0 1 33 0 32 17 0 1 111 12 14 41 chain 514596 chr1 248956422 + 147854575 147861287 L1PA7 6471 + 3 6470 2540 145 0 6 6 34 28 144 0 10 61 0 2 29 17 18 72 0 11 439 12 16 103 6 2 7 0 4 182 13 14 180 0 1 615 4 6 19 0 1 365 1 0 30 0 2 179 0 1 47 0 1 312 0 1 550 1 0 149 0 3 322 7 8 47 0 4 20 0 18 254 0 12 688 1 2 98 0 1 38 1 0 4 7 8 140 4 2 169 209 0 366 116 6 499 chain 11740 chr1 248956422 + 147860120 147860261 L1PA7 6471 + 5621 5760 67330 89 2 0 50 chain 511106 chr1 248956422 + 147861636 147867756 L1PA6 6164 + 0 6161 2709 151 10 11 407 1 0 611 1 2 759 0 1 234 0 13 201 0 2 227 5 25 540 5 6 331 4 5 159 0 1 8 1 0 258 0 1 594 0 3 58 0 1 69 0 1 443 10 2 188 0 4 33 0 1 802 1 0 9 chain 5547 chr1 248956422 + 147925220 147925371 L1MA8 2339 + 2120 2265 83048 21 22 24 33 6 0 11 25 24 24 1 0 8 chain 9819 chr1 248956422 + 147953925 147954038 L1PA7 6471 + 6357 6470 70782 113 chain 6349 chr1 248956422 + 147956617 147956697 L1MA7 2200 + 466 546 79842 80 chain 120991 chr1 248956422 + 147982996 147984337 L1PA3long 6157 + 4815 6157 15347 134 0 4 153 4 1 1050 chain 4098 chr1 248956422 + 147997232 147997311 Ricksha_c 1012 + 94 168 90795 44 8 7 7 2 0 10 2 0 6 chain 3440 chr1 248956422 + 148020482 148020520 tRNA-Gly-GGG 71 + 9 47 95737 38 chain 4111 chr1 248956422 + 148032789 148032832 tRNA-Gln-CAG 43 + 0 43 90700 43 chain 6705 chr1 248956422 + 148034280 148034358 HY3 101 + 20 98 78624 78 chain 200769 chr1 248956422 + 148111108 148114201 L1P2 5180 + 845 3231 9697 223 8 9 389 0 1 57 0 1 304 0 1 6 719 0 82 0 1 609 0 1 264 0 4 298 0 1 107 0 1 27 chain 14028 chr1 248956422 + 148128915 148129094 L1PA6 6164 + 5921 6099 63548 90 1 2 80 2 0 6 chain 49977 chr1 248956422 + 148131077 148131735 PABL_A 660 + 1 652 29571 79 17 6 4 1 0 240 1 6 37 1 0 34 0 1 244 chain 10602 chr1 248956422 + 148180628 148180811 L1MA1 4479 + 4021 4190 69225 57 1 0 31 3 0 33 1 0 9 30 21 18 chain 3916 chr1 248956422 + 148223589 148223749 MLT1B 390 + 0 154 92007 16 20 13 29 69 70 26 chain 7312 chr1 248956422 + 148246757 148246833 tRNA-Asn-AAT 76 + 0 76 76628 76 chain 6496 chr1 248956422 + 148281366 148281436 tRNA-His-CAY_ 70 + 0 70 79368 70 chain 27889 chr1 248956422 + 148327048 148327445 LOR1b 457 + 8 411 45051 22 1 11 52 3 0 160 13 12 146 chain 3980 chr1 248956422 + 148328811 148328854 tRNA-Gln-CAG 43 + 0 43 91579 43 chain 6901 chr1 248956422 + 148330314 148330392 HY3 101 + 22 100 77950 78 chain 6261 chr1 248956422 + 148355569 148355643 HY3 101 + 20 95 80120 15 0 1 59 chain 32461 chr1 248956422 + 148392930 148393709 MER51D 577 + 104 577 39980 35 2 6 222 319 12 13 3 0 107 1 0 8 3 1 12 11 14 43 chain 7234 chr1 248956422 + 148395566 148395659 LTR24C 604 + 71 164 76848 93 chain 6148 chr1 248956422 + 148405383 148405457 tRNA-Asn-AAC 74 + 0 74 80541 74 chain 124007 chr1 248956422 + 148438400 148439970 THE1B-int 1605 + 0 1599 14850 25 0 1 404 1 26 219 0 1 4 0 2 274 3 2 534 0 2 101 1 0 4 chain 49946 chr1 248956422 + 148461431 148461990 L1PA3long 6157 + 5601 6157 29587 551 3 0 5 chain 21753 chr1 248956422 + 148475602 148475885 L1PA16 3655 + 3310 3590 54167 268 3 0 12 chain 153731 chr1 248956422 + 148500008 148501746 L1PA5 6144 + 4400 6140 12125 222 1 0 153 0 1 294 0 1 222 0 1 846 chain 11986 chr1 248956422 + 148522600 148522765 U1 164 + 0 164 66862 38 18 17 109 chain 13872 chr1 248956422 + 148524801 148525021 LOR1b 457 + 0 254 63765 24 6 17 50 4 3 25 0 13 16 3 1 21 0 13 71 chain 7139 chr1 248956422 + 148529256 148529330 tRNA-Asn-AAC 74 + 0 74 77135 74 chain 201813 chr1 248956422 + 148579804 148582905 L1P2 5180 + 845 3231 9649 223 8 9 389 0 1 57 0 1 304 0 1 17 727 0 71 0 1 609 0 1 264 0 4 298 0 1 107 0 1 27 chain 26525 chr1 248956422 + 148611246 148611596 THE1A 353 + 0 353 46940 88 8 10 12 1 0 65 0 1 124 0 1 52 chain 114631 chr1 248956422 + 148611863 148613321 HERVL-int 5654 + 4184 5649 16450 394 0 12 359 1 4 50 16 6 167 12 14 35 8 5 43 0 3 373 chain 29258 chr1 248956422 + 148613326 148613723 MLT2A1 477 + 0 395 42950 18 2 0 124 28 32 211 4 0 10 chain 5623 chr1 248956422 + 148621127 148621431 L1MB7 1623 + 1331 1597 82696 5 1 0 9 2 1 17 12 18 41 1 0 7 172 131 37 chain 3253 chr1 248956422 + 148658961 148658997 MIRb 242 + 164 200 97449 36 chain 45668 chr1 248956422 + 148792572 148793204 LTR10E 629 + 0 627 31224 18 1 0 142 6 8 128 2 1 27 1 0 46 7 6 185 30 28 33 1 0 5 chain 12250 chr1 248956422 + 148801107 148801353 L1MC1 2226 + 641 915 66367 71 1 0 42 14 15 47 48 76 23 chain 49739 chr1 248956422 + 148872500 148873124 L1PA7 6471 + 5843 6467 29662 296 1 0 174 2 0 6 6 8 78 5 6 56 chain 10985 chr1 248956422 + 148958602 148958881 MER33 330 + 48 322 68571 48 56 43 35 1 3 52 34 32 26 8 16 19 chain 3766 chr1 248956422 + 149044936 149044979 tRNA-Gln-CAG 43 + 0 43 93105 43 chain 201127 chr1 248956422 + 149066256 149069358 L1P2 5180 + 845 3231 9682 223 8 9 389 0 1 57 0 1 304 0 1 6 728 0 82 0 1 609 0 1 264 0 4 298 0 1 107 0 1 27 chain 14658 chr1 248956422 + 149084068 149084245 L1PA6 6164 + 5921 6099 62726 90 1 2 86 chain 50572 chr1 248956422 + 149086195 149086851 PABL_A 660 + 1 652 29359 79 15 6 4 1 0 240 1 6 36 1 0 36 0 1 243 chain 45026 chr1 248956422 + 149194360 149194863 L1PA3long 6157 + 5646 6152 31563 221 0 3 282 chain 25364 chr1 248956422 + 149206513 149206797 AluY 311 + 3 287 48678 130 1 0 44 0 1 109 chain 361500 chr1 248956422 + 149222149 149227898 L1PB1 5432 + 637 5420 5787 291 0 4 465 1 0 6 15 0 176 20 0 69 303 3 543 0 4 19 0 12 209 0 1 55 6 0 56 718 158 178 0 3 260 0 1 64 1 0 145 7 6 103 0 3 96 0 2 163 6 0 896 3 0 184 16 15 276 3 0 8 54 6 16 1 0 25 4 0 9 2 0 52 1 0 17 1 0 45 1 0 15 13 0 6 6 6 13 9 7 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 21455 chr1 248956422 + 149224665 149224895 L1PA3long 6157 + 5927 6157 54578 230 chain 31337 chr1 248956422 + 149227938 149228353 MER4A1 472 + 54 472 40855 141 6 10 21 5 4 242 chain 512341 chr1 248956422 + 149293684 149299640 L1PA5 6144 + 3 5968 2651 92 15 29 225 2 1 372 2 1 156 0 1 152 1 2 820 0 1 1820 1 0 141 1 0 34 0 1 57 0 1 438 0 4 437 14 0 407 0 2 333 0 3 352 1 0 83 chain 6139 chr1 248956422 + 149304204 149304308 MER96B 391 - 65 168 80571 35 3 0 6 0 4 14 8 6 38 chain 32127 chr1 248956422 + 149370803 149371285 L1PA11 4918 + 4117 4578 40247 278 1 0 4 0 1 7 2 0 67 2 0 14 6 5 15 4 0 9 8 3 10 14 10 14 1 0 13 2 0 11 chain 46803 chr1 248956422 + 149432862 149433439 L1PA8 5853 + 5277 5847 30726 287 1 0 44 2 0 70 2 1 9 1 0 52 2 1 19 1 0 87 chain 47029 chr1 248956422 + 149461615 149462136 L1PA5 6144 + 5617 6138 30647 521 chain 55993 chr1 248956422 + 149483848 149484493 L1PA4 6152 + 5492 6138 27566 579 5 6 61 chain 3092 chr1 248956422 + 149556824 149556856 MER51D 577 + 537 569 98854 32 chain 28508 chr1 248956422 + 149572020 149572383 THE1B 368 + 0 368 44116 27 0 1 9 0 5 120 3 2 204 chain 102667 chr1 248956422 + 149596492 149597736 L1PA6 6164 + 4902 6146 17987 141 1 0 275 0 4 75 0 1 296 5 1 451 chain 45926 chr1 248956422 + 149625652 149626158 L1PA3long 6157 + 5646 6152 31092 506 chain 7730 chr1 248956422 + 149629604 149629700 LTR24C 604 + 71 167 75532 96 chain 32370 chr1 248956422 + 149644797 149645242 MER51D 577 + 104 558 40062 26 0 5 15 1 0 240 1 0 45 7 17 47 1 0 8 6 4 25 2 1 21 chain 70192 chr1 248956422 + 149718173 149719522 L1PA17 2846 + 1630 2675 23953 190 363 51 28 0 1 211 2 1 98 0 1 85 0 13 59 3 6 142 14 8 9 1 0 59 2 0 8 1 3 29 1 0 17 1 0 26 chain 5939 chr1 248956422 + 149737318 149737398 MADE1 96 + 0 96 81318 38 2 18 40 chain 40633 chr1 248956422 + 149773873 149774470 MER4B 649 + 0 633 34197 25 1 0 132 0 42 17 0 2 12 8 1 34 8 0 79 7 31 46 19 4 139 1 0 69 chain 39031 chr1 248956422 + 149795320 149795888 LTR61 567 + 0 558 35332 17 10 0 38 17 11 156 7 10 17 0 1 7 1 0 17 0 6 216 1 2 20 3 0 10 2 1 29 chain 9586 chr1 248956422 + 149869139 149869335 Tigger4 2445 + 143 322 71289 6 1 0 10 1 0 12 2 0 5 13 6 23 7 6 11 2 0 14 5 1 72 0 1 12 chain 9999 chr1 248956422 + 149869722 149869874 Tigger4b 360 + 197 358 70428 100 19 28 33 chain 24079 chr1 248956422 + 149976337 149976631 AluSp 311 + 10 301 50682 35 2 0 236 1 0 20 chain 69565 chr1 248956422 + 150051971 150053359 L1PREC2 3366 + 2019 3249 24104 60 0 2 276 0 4 391 2 0 6 5 15 33 1 0 20 3 11 13 1 0 18 72 23 14 5 0 11 8 6 22 48 31 34 3 1 41 3 1 7 1 0 4 1 0 12 198 121 19 10 5 9 4 0 12 13 0 8 chain 79194 chr1 248956422 + 150099523 150100938 L1PA14 3548 + 2241 3362 21799 45 283 0 199 10 16 34 5 4 50 1 2 67 0 1 28 2 1 102 0 1 147 3 1 9 7 5 40 9 7 5 2 0 106 11 7 13 2 0 6 1 0 30 0 3 51 1 0 31 2 0 23 0 2 54 20 15 16 chain 2995 chr1 248956422 + 150108364 150108440 MER3 215 + 88 169 99880 25 16 26 12 6 1 17 chain 17177 chr1 248956422 + 150125481 150125673 L1PA5 6144 + 5815 6024 59599 156 0 17 36 chain 30690 chr1 248956422 + 150189834 150190249 MLT2A1 477 + 6 477 41393 136 4 11 15 5 2 11 0 1 22 0 1 166 0 7 7 12 55 37 chain 16650 chr1 248956422 + 150205968 150206177 LTR7B 505 + 212 441 60213 15 4 25 70 1 0 119 chain 10919 chr1 248956422 + 150236970 150237139 U2 167 + 0 164 68670 129 20 15 20 chain 13590 chr1 248956422 + 150301348 150301508 AluSq10 312 + 133 289 64180 109 4 0 47 chain 17019 chr1 248956422 + 150396658 150396866 L1PB1 5432 + 3929 4141 59785 94 0 4 114 chain 12055 chr1 248956422 + 150437055 150437213 Tigger1 2417 + 1464 1622 66749 131 1 0 4 0 1 22 chain 6360 chr1 248956422 + 150451741 150451845 MLT1C 463 + 63 165 79807 56 7 8 15 3 0 23 chain 10949 chr1 248956422 + 150519446 150519574 AluSp 311 + 8 136 68621 128 chain 7106 chr1 248956422 + 150632807 150632885 LTR5_Hs 974 + 0 78 77245 78 chain 80135 chr1 248956422 + 150634923 150635885 LTR5_Hs 974 + 0 974 21602 13 0 4 267 5 7 81 6 12 183 0 1 249 6 0 8 0 6 80 2 1 62 chain 27502 chr1 248956422 + 150640168 150640575 LTR7B 505 + 0 497 45580 105 0 10 27 0 2 31 0 38 12 3 27 26 0 2 42 0 1 42 1 0 23 4 5 23 0 14 11 14 13 43 chain 29923 chr1 248956422 + 150641375 150641776 LTR7 482 + 0 471 42120 69 8 46 128 4 35 11 3 4 178 chain 393538 chr1 248956422 + 150654650 150659225 HERVK9-int 4720 + 134 4719 5254 33 6 7 192 0 1 839 0 2 142 11 12 258 0 1 578 5 6 864 1 0 47 0 1 179 9 7 114 0 5 1297 chain 37491 chr1 248956422 + 150659226 150659716 MER9a3 513 + 0 513 36406 15 3 4 160 0 1 76 7 6 50 12 33 89 0 3 8 2 0 68 chain 89285 chr1 248956422 + 150709189 150710213 LTR5A 1029 + 0 1029 19807 13 0 4 130 1 0 542 0 2 338 chain 29563 chr1 248956422 + 150718975 150719284 AluYa5 310 + 1 310 42534 309 chain 8356 chr1 248956422 + 150739727 150739858 Tigger1 2417 + 643 780 74014 27 14 20 90 chain 141924 chr1 248956422 + 150780893 150782545 SVA_F 1814 + 0 1814 12944 514 120 0 190 0 40 140 0 242 688 chain 3203 chr1 248956422 + 150781423 150781462 SVA_F 1814 + 374 413 97867 39 chain 2558 chr1 248956422 + 150781487 150781527 SVA_F 1814 + 514 787 80105 23 0 233 17 chain 3186 chr1 248956422 + 150824159 150824240 MADE1 96 - 0 96 98022 23 21 36 37 chain 142199 chr1 248956422 + 150850242 150851876 SVA_C 1631 + 0 1628 12919 17 2 0 7 4 0 700 43 0 231 1 49 618 5 0 6 chain 2904 chr1 248956422 + 150850972 150851015 SVA_C 1631 + 761 804 55036 43 chain 38325 chr1 248956422 + 150864340 150864759 L1PA2 6032 + 5600 6016 35830 6 3 0 410 chain 10625 chr1 248956422 + 150893780 150893909 MER85 139 + 0 139 69178 89 0 10 40 chain 53268 chr1 248956422 + 150899849 150900513 LTR12_ 688 + 24 688 28478 428 1 2 59 1 0 175 chain 9795 chr1 248956422 + 150937220 150937471 L1MB2 1706 + 1435 1693 70830 54 72 94 15 1 0 13 1 0 10 1 0 6 20 8 58 chain 3755 chr1 248956422 + 150948573 150948618 MER41A 554 + 423 468 93207 45 chain 14959 chr1 248956422 + 151077185 151077662 MER41-int 2638 + 1650 1857 62313 18 1 0 26 1 3 46 8 0 67 263 0 47 chain 18367 chr1 248956422 + 151115131 151115362 AluSp 311 + 53 286 58279 151 8 10 72 chain 9944 chr1 248956422 + 151244241 151244365 MER2 342 + 88 215 70545 21 0 3 103 chain 34396 chr1 248956422 + 151272665 151273077 LTR12C 1709 + 1293 1709 38432 21 0 5 302 5 4 84 chain 72826 chr1 248956422 + 151362471 151363452 MSTA-int 1630 + 632 1630 23351 81 24 37 90 0 1 100 11 12 272 0 3 288 1 0 41 4 5 49 1 0 19 chain 7186 chr1 248956422 + 151439010 151439093 HY4 93 + 11 93 76985 56 1 0 26 chain 3962 chr1 248956422 + 151475139 151475494 Charlie13a 687 + 199 532 91687 42 289 267 24 chain 8105 chr1 248956422 + 151518229 151518337 MER5A 189 + 7 113 74628 45 1 0 5 1 0 56 chain 30636 chr1 248956422 + 151592806 151593538 MER4B 649 + 0 622 41439 27 1 0 72 22 22 15 1 0 21 0 42 103 0 1 45 268 118 97 12 11 48 chain 169053 chr1 248956422 + 151599616 151601737 SVA_E 1901 + 0 1900 11152 145 2 0 179 3 0 493 169 0 25 0 1 84 3 0 38 50 0 130 1 0 33 44 0 93 0 1 7 0 49 622 chain 2412 chr1 248956422 + 151600438 151600478 SVA_E 1901 + 777 817 69553 40 chain 6720 chr1 248956422 + 151600479 151600591 SVA_E 1901 + 817 974 35561 26 1 0 80 0 46 5 chain 2520 chr1 248956422 + 151600757 151600799 SVA_E 1901 + 1014 1057 35561 38 0 1 4 chain 5428 chr1 248956422 + 151629329 151629397 U6 107 + 6 74 83566 68 chain 28874 chr1 248956422 + 151667543 151667851 AluYa5 310 + 0 306 43523 123 2 0 183 chain 17545 chr1 248956422 + 151736015 151736349 MSTA 426 + 0 380 59185 92 6 7 4 0 1 55 0 4 38 71 100 10 3 6 37 0 8 18 chain 15613 chr1 248956422 + 151764581 151764871 MER47A 366 + 0 362 61516 17 57 119 73 11 16 44 0 5 88 chain 3749 chr1 248956422 + 151798208 151798250 MER3 215 + 50 92 93240 42 chain 4645 chr1 248956422 + 151812572 151812629 MER5B 177 + 91 148 87559 57 chain 6756 chr1 248956422 + 151877622 151877721 MER3 215 + 5 111 78455 55 5 12 39 chain 11472 chr1 248956422 + 151895729 151895890 MSTA 426 + 28 192 67788 103 9 8 13 0 4 36 chain 13002 chr1 248956422 + 151897403 151897550 MLT2A1 477 + 213 360 65113 147 chain 252845 chr1 248956422 + 151897637 151902064 L1PBa1 4058 + 49 3439 8160 7 1 0 34 0 4 62 1 2 91 0 3 57 6 1 15 4 5 101 3 1 19 0 1 4 6 5 28 0 1 27 0 1 48 1 0 57 9 8 26 2 3 226 10 10 169 0 3 259 8 6 5 0 2 45 4 0 233 296 0 23 0 4 22 1 0 36 0 77 25 0 1 660 11 0 193 0 6 46 5 1 234 512 0 164 0 2 15 2 3 85 1 0 24 313 12 6 1 0 47 1 0 131 1 0 4 chain 41080 chr1 248956422 + 151900773 151901266 MER9a3 513 + 15 513 33914 95 0 1 147 1 0 177 0 1 16 0 4 57 chain 28382 chr1 248956422 + 151902064 151902630 L1PB1 5432 + 4751 5413 44153 53 1 0 100 0 73 72 2 3 22 34 84 11 3 1 50 2 1 10 11 10 40 1 0 15 3 0 7 15 6 15 27 22 24 1 0 7 5 3 11 1 0 13 1 0 9 chain 117990 chr1 248956422 + 151905953 151907383 LTR12C 1709 + 0 1709 15888 654 0 278 180 1 0 4 4 2 106 0 4 382 26 25 68 0 1 5 chain 16502 chr1 248956422 + 151907386 151907613 LTR76 689 + 437 647 60370 35 4 0 33 15 0 101 0 1 31 0 1 8 chain 14102 chr1 248956422 + 151908856 151909062 MER61-int 3695 + 1 194 63453 27 13 1 21 1 0 15 0 1 39 1 0 89 chain 6116 chr1 248956422 + 151920565 151920657 LTR51 675 + 580 675 80675 24 8 12 4 1 0 55 chain 3660 chr1 248956422 + 151978547 151978607 MER41B 635 + 481 554 93919 30 0 1 8 1 14 5 1 0 15 chain 3061 chr1 248956422 + 152093175 152093210 L1MA7 2200 - 903 938 99209 35 chain 19164 chr1 248956422 + 152093247 152093706 L1MA7 2200 + 1672 2090 57383 47 3 0 70 16 1 7 18 0 30 1 0 89 15 33 28 20 16 8 8 0 9 65 55 25 chain 3918 chr1 248956422 + 152098960 152099033 L1PB3 3668 + 3482 3551 91982 15 2 1 5 1 0 25 3 1 22 chain 30721 chr1 248956422 + 152128978 152129321 L1PA3long 6157 + 5811 6157 41373 203 0 1 42 0 1 82 0 1 16 chain 11175 chr1 248956422 + 152253723 152253866 THE1C 375 + 231 373 68296 119 1 0 23 chain 365298 chr1 248956422 + 152262817 152273792 L1PA4 6152 + 1542 5887 5730 173 0 1 426 1 7 172 0 1 212 0 1 647 1 5 5 3 0 248 1 4 151 1 2 85 1 0 166 0 5 1356 6651 0 222 0 3 453 chain 120141 chr1 248956422 + 152271513 152272900 L1PA4 6152 + 3600 4991 15516 756 1 5 630 chain 372438 chr1 248956422 + 152278254 152283592 L1PB1 5432 + 34 5424 5613 12 13 14 26 5 6 79 7 11 17 4 5 195 2 0 395 0 1 169 0 1 72 5 7 178 2 1 74 1 0 4 0 1 93 2 1 6 19 0 9 9 7 424 0 2 42 0 9 105 6 5 106 2 0 6 1 3 179 0 66 7 0 8 108 8 0 4 0 1 44 1 2 296 2 0 28 0 1 68 28 0 636 0 1 152 0 6 7 3 0 108 0 1 85 4 6 15 25 57 38 4 5 148 5 6 171 3 0 106 15 20 10 0 1 104 0 1 12 5 7 79 1 2 203 0 3 181 1 2 9 9 0 24 40 32 50 2 1 16 1 0 44 1 0 15 25 13 18 8 5 14 1 5 19 1 0 18 8 7 9 1 0 16 1 0 4 chain 154020 chr1 248956422 + 152297287 152299130 L1PA5 6144 + 4283 6130 12110 392 0 1 360 0 1 172 0 1 4 0 2 5 7 5 67 0 1 696 7 0 7 6 13 120 chain 5149 chr1 248956422 + 152362450 152362514 MER75A 77 + 13 77 84911 64 chain 11125 chr1 248956422 + 152377676 152377815 Tigger1 2417 + 1019 1158 68367 139 chain 9684 chr1 248956422 + 152386512 152386634 Tigger1 2417 + 2251 2372 71093 61 1 0 60 chain 8755 chr1 248956422 + 152492129 152492239 L1PA16 3655 + 3465 3575 73090 110 chain 184448 chr1 248956422 + 152614580 152616666 L1PA4 6152 + 3129 5227 10365 554 8 0 314 2 0 902 0 21 6 0 1 300 chain 45714 chr1 248956422 + 152631975 152632661 L1PREC2 3366 + 1162 1830 31204 74 18 13 50 1 0 11 1 0 64 4 6 145 0 1 18 0 3 6 5 2 40 13 0 152 2 0 21 1 2 60 chain 163245 chr1 248956422 + 152689415 152691383 L1PA8 5853 + 2907 4868 11532 127 4 0 187 3 1 1068 0 1 79 1 0 211 0 1 120 3 1 165 chain 316259 chr1 248956422 + 152691596 152695234 L1P1 4361 + 686 4341 6480 351 0 2 1328 0 8 496 0 4 17 1 2 29 0 1 13 1 7 1046 2 0 161 1 0 154 1 0 23 2 1 12 chain 540124 chr1 248956422 + 152830284 152836376 L1PA4 6152 + 42 6152 1332 73 7 21 20 21 7 202 6 7 1941 2 0 23 0 17 1425 0 1 143 0 1 2229 chain 84959 chr1 248956422 + 152927588 152928529 L1PA3long 6157 + 5211 6152 20630 941 chain 136931 chr1 248956422 + 152938968 152940511 L1PA3long 6157 + 2505 4081 13343 139 1 39 82 9 3 746 0 1 566 chain 70845 chr1 248956422 + 152956873 152957649 L1PA2 6032 + 3957 4741 23793 190 0 1 504 0 7 82 chain 42437 chr1 248956422 + 152958454 152958997 MER41A 554 + 0 554 33105 271 8 10 190 0 9 74 chain 32757 chr1 248956422 + 153008218 153008575 L1PA3long 6157 + 2194 2551 39710 357 chain 53305 chr1 248956422 + 153020540 153021266 MER4-int 2692 + 521 2692 28464 92 0 4 76 1 1434 99 0 1 229 23 27 5 0 2 66 0 1 135 chain 33975 chr1 248956422 + 153021280 153021693 MER4A1 472 + 6 453 38727 217 0 21 68 1 14 127 chain 41898 chr1 248956422 + 153021956 153022481 LTR6B 557 + 0 557 33420 22 0 28 5 1 2 302 0 1 36 1 0 99 0 1 4 0 1 33 0 1 22 chain 188464 chr1 248956422 + 153108652 153110744 L1PA3long 6157 + 4063 6156 10191 967 0 1 276 2 1 699 0 1 148 chain 46793 chr1 248956422 + 153110800 153111341 L1PA7 6471 + 5924 6465 30730 541 chain 115099 chr1 248956422 + 153123367 153126141 L1PBa 3878 + 92 1735 16375 7 1 0 26 1183 40 46 3 1 25 2 0 100 10 12 175 1 0 46 5 8 89 2 1 571 5 7 193 10 25 102 6 1 38 0 3 9 1 0 118 chain 41312 chr1 248956422 + 153279291 153279730 L1HS 6032 + 4767 5206 33780 439 chain 3493 chr1 248956422 + 153300451 153300488 MER65A 464 + 1 38 95305 37 chain 5071 chr1 248956422 + 153325357 153325729 L1MC5 759 + 331 715 85299 42 294 306 36 chain 75547 chr1 248956422 + 153334491 153335510 L1PB4 2604 + 1023 2058 22706 533 13 22 69 1 0 79 0 1 85 0 1 83 7 11 51 17 19 81 chain 43059 chr1 248956422 + 153343704 153344272 LTR19B 566 + 0 566 32739 101 3 2 47 8 6 5 0 2 138 9 1 69 0 2 76 3 4 94 0 4 15 chain 30577 chr1 248956422 + 153370145 153370753 LTR15 485 + 0 468 41493 173 0 1 109 235 98 55 4 0 32 chain 12430 chr1 248956422 + 153378410 153378612 L1PA17 2846 + 23 221 66099 4 1 0 4 1 0 73 0 4 42 1 0 30 25 20 21 chain 525671 chr1 248956422 + 153406996 153413138 L1PA5 6144 + 0 6138 2016 48 0 6 124 0 1 38 3 4 210 1 0 4 1 2 732 9 0 60 1 0 1370 0 13 88 14 0 982 2 0 134 1 4 802 1 0 302 2 1 467 0 3 215 3 0 528 chain 78000 chr1 248956422 + 153442420 153443261 L1PA2 6032 + 4597 5438 22101 841 chain 25437 chr1 248956422 + 153496409 153496767 L1PA8 5853 + 5502 5853 48572 34 0 1 27 1 0 44 2 0 69 1 0 7 7 6 45 1 0 5 2 1 19 2 1 92 chain 4817 chr1 248956422 + 153515313 153515374 ORSL 269 + 153 214 86611 61 chain 112206 chr1 248956422 + 153521603 153522988 LTR12C 1709 + 0 1709 16786 400 7 16 75 0 1 302 8 324 100 6 10 235 5 1 8 0 2 87 1 0 18 3 1 38 15 14 77 chain 26949 chr1 248956422 + 153525808 153526721 MER83 447 + 0 447 46340 14 0 1 132 464 0 31 4 5 38 34 31 61 1 0 25 0 2 56 23 21 30 chain 17760 chr1 248956422 + 153567251 153567509 L1PA8 5853 + 5609 5853 58939 70 1 0 8 22 8 45 2 1 19 1 0 54 0 3 36 chain 134135 chr1 248956422 + 153574481 153575981 SVA_C 1631 + 21 1629 13637 16 0 20 802 1 0 51 1 0 17 0 91 296 1 0 315 chain 104040 chr1 248956422 + 153582338 153583897 SVA_A 1864 + 20 1857 17817 27 5 0 47 0 11 77 2 0 171 0 3 295 3 0 33 3 37 42 1 0 27 13 268 23 63 10 20 4 4 28 1 0 24 54 74 74 9 6 24 0 16 36 7 8 6 1 0 55 0 3 15 3 1 359 0 6 7 chain 13813 chr1 248956422 + 153603713 153603915 LTR9B 643 + 445 643 63859 67 0 7 9 9 0 60 17 15 40 chain 10463 chr1 248956422 + 153603957 153604082 MER61-int 3695 + 1483 1610 69326 89 0 2 36 chain 58122 chr1 248956422 + 153604082 153604959 HUERS-P3b-int 2065 + 1162 2030 26929 58 0 1 136 23 20 10 1 2 48 0 1 33 1 0 44 6 4 64 0 20 8 13 0 3 1 0 25 1 0 68 0 1 17 6 4 72 2 0 19 4 1 62 4 0 58 1 0 89 chain 14928 chr1 248956422 + 153605479 153606573 LTR9B 643 + 0 552 62355 59 785 248 27 1 0 79 64 63 36 0 7 6 11 1 26 chain 5923 chr1 248956422 + 153621607 153621682 LTR12C 1709 + 1293 1371 81386 17 3 6 55 chain 21927 chr1 248956422 + 153637372 153637633 AluSg 306 + 5 266 53932 261 chain 6939 chr1 248956422 + 153671249 153671321 tRNA-Met-i 72 + 0 72 77815 72 chain 4395 chr1 248956422 + 153785821 153785877 LTR38B 592 + 509 564 88915 35 1 0 20 chain 22210 chr1 248956422 + 153831146 153831502 L1PA8 5853 + 5507 5853 53538 8 1 0 29 5 4 18 1 0 42 2 0 54 1 0 17 32 30 31 2 1 19 1 0 93 chain 6451 chr1 248956422 + 153833124 153833203 FAM 185 + 64 143 79511 79 chain 9575 chr1 248956422 + 153836022 153836140 Tigger1 2417 + 2298 2416 71319 118 chain 32949 chr1 248956422 + 153844564 153844924 L1PA2 6032 + 5671 6031 39551 360 chain 20076 chr1 248956422 + 153848681 153848944 AluSg7 307 + 10 274 56284 108 9 8 136 0 2 10 chain 5881 chr1 248956422 + 154027136 154027354 L1MB5 1630 + 1392 1607 81549 23 24 24 32 94 92 38 1 0 6 chain 7209 chr1 248956422 + 154030185 154030317 L1PB1 5432 + 5308 5430 76915 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 1 0 6 chain 21004 chr1 248956422 + 154046483 154046767 L1MA3 4352 + 3777 4052 55112 127 0 1 85 11 5 13 4 0 44 chain 39854 chr1 248956422 + 154047361 154047852 MER9a3 513 + 0 513 34771 18 0 2 91 0 1 60 5 6 80 0 17 159 0 1 78 chain 388061 chr1 248956422 + 154048481 154053404 HERVK9-int 4720 + 71 4705 5353 53 2 0 33 18 17 365 0 7 481 0 1 14 1 0 337 0 1 502 0 1 122 0 1 158 1 0 636 309 0 44 1 0 455 0 1 7 1 0 19 5 6 775 1 15 583 chain 37916 chr1 248956422 + 154053420 154053890 MER9a3 513 + 0 492 36125 18 0 2 91 0 1 67 12 13 66 0 17 159 0 1 57 chain 287633 chr1 248956422 + 154065956 154070196 L1PA6 6164 + 2834 6150 7210 33 3 0 323 0 1 6 315 0 26 1 0 351 0 1 31 3 1 446 1 0 594 0 12 311 612 0 345 1 0 231 3 0 604 chain 28270 chr1 248956422 + 154068680 154068985 L1PA3long 6157 + 5852 6157 44458 305 chain 13104 chr1 248956422 + 154090833 154091011 L1MB3 1562 + 931 1106 64924 40 1 0 123 2 0 12 chain 15239 chr1 248956422 + 154109130 154109360 L1M1 2793 + 2452 2684 61993 72 0 2 64 8 10 25 8 7 40 2 1 11 chain 8062 chr1 248956422 + 154160775 154160873 Tigger4a 237 + 16 121 74720 86 0 7 12 chain 3434 chr1 248956422 + 154282472 154282509 MER4E1 777 + 663 700 95792 37 chain 135927 chr1 248956422 + 154286899 154288426 SVA_D 2077 + 14 2077 13443 673 0 40 163 0 498 13 5 1 10 0 1 25 0 1 638 chain 4031 chr1 248956422 + 154300789 154300834 MER41A 554 + 396 441 91236 45 chain 13917 chr1 248956422 + 154309298 154309513 THE1B 368 + 152 368 63715 17 6 5 12 6 8 113 6 5 18 0 1 37 chain 28292 chr1 248956422 + 154314225 154314602 MER41A 554 + 118 499 44430 63 7 8 22 7 10 278 chain 105033 chr1 248956422 + 154316542 154317940 MER41-int 2638 + 1068 2473 17685 195 5 10 12 1 6 6 0 1 22 3 4 125 3 5 230 1 0 110 3 0 62 0 1 18 2 0 76 0 1 40 7 5 434 1 0 42 chain 20169 chr1 248956422 + 154318611 154318840 MER41A 554 + 259 488 56172 229 chain 4466 chr1 248956422 + 154319155 154319208 MER41A 554 + 501 554 88522 53 chain 4299 chr1 248956422 + 154338742 154338789 U7 62 + 0 47 89500 47 chain 35655 chr1 248956422 + 154358893 154359350 MER41B 635 + 0 461 37627 128 0 1 131 0 7 99 5 0 23 0 1 71 chain 44287 chr1 248956422 + 154361929 154362553 MER4A 717 + 0 673 31958 45 0 1 76 0 1 4 1 0 125 0 7 9 0 5 93 1 41 82 4 0 94 7 10 16 7 4 60 chain 3106 chr1 248956422 + 154508639 154508674 MER81 114 + 21 56 98733 35 chain 3726 chr1 248956422 + 154534214 154534255 MER58B 340 + 290 331 93436 41 chain 6885 chr1 248956422 + 154620041 154620122 L1MB2 1706 + 1611 1692 78008 81 chain 121524 chr1 248956422 + 154670567 154679312 LTR12C 1709 + 0 1709 15258 482 21 10 158 0 119 68 1 0 104 7127 0 171 1 0 4 4 2 66 17 0 40 0 4 481 chain 48969 chr1 248956422 + 154671401 154671998 LTR12C 1709 + 1101 1708 25587 11 1 0 4 4 2 106 0 4 107 0 8 272 2 3 90 chain 53287 chr1 248956422 + 154677854 154678515 LTR12C 1709 + 0 650 24001 482 21 10 158 chain 42112 chr1 248956422 + 154679405 154679909 MER9a1 513 + 0 513 33290 171 1 2 119 5 13 208 chain 5065 chr1 248956422 + 154805317 154805443 MER5B 177 + 29 138 85334 17 50 34 45 1 0 13 chain 203757 chr1 248956422 + 155148196 155156479 L1MA2 4263 + 524 4114 9579 18 1 3 5 3 0 17 0 5 77 1 2 142 1835 22 202 4 5 21 6 1 25 0 3 169 10 8 77 2567 512 35 5 6 4 1 0 41 8 10 31 1 0 226 2 0 7 0 2 45 4 5 195 315 0 77 10 11 7 0 1 103 6 4 53 5 0 39 476 0 154 0 1 4 1 0 9 1 2 169 0 2 85 6 5 49 40 0 112 0 2 104 2 8 12 0 1 47 0 8 52 1 0 18 7 3 75 1 0 134 13 10 17 20 30 10 1 0 50 0 1 5 2 0 37 11 9 93 7 0 18 10 9 19 1 0 10 chain 23676 chr1 248956422 + 155291221 155291507 AluSc 308 + 6 292 51314 286 chain 5237 chr1 248956422 + 155307212 155307272 MER51B 395 + 335 395 84519 60 chain 21408 chr1 248956422 + 155307340 155307675 MER41A 554 + 0 352 54627 232 55 72 48 chain 11325 chr1 248956422 + 155364944 155365104 MER41B 635 + 481 627 68044 8 2 0 90 13 1 47 chain 26037 chr1 248956422 + 155369164 155369460 AluY 311 + 3 296 47672 129 3 0 164 chain 44781 chr1 248956422 + 155428465 155429008 MER9a2 513 + 0 513 31712 286 32 0 129 0 2 96 chain 14179 chr1 248956422 + 155547993 155548239 L1PA8 5853 + 5521 5762 63348 43 1 0 45 2 0 61 24 23 21 30 29 19 chain 44173 chr1 248956422 + 155623954 155624460 MER9a2 513 + 0 507 32033 443 0 1 63 chain 5798 chr1 248956422 + 155700507 155700575 SVA_F 1814 + 873 1003 43343 15 3 0 10 0 64 32 0 1 8 chain 88590 chr1 248956422 + 155700575 155701698 SVA_F 1814 + 760 1814 19924 6 0 1 8 1 0 13 37 0 28 0 39 25 0 1 17 2 1 45 81 18 64 5 0 151 2 0 10 1 0 627 chain 3155 chr1 248956422 + 155700603 155700640 SVA_F 1814 + 1031 1068 43343 37 chain 6906 chr1 248956422 + 155700757 155700838 SVA_F 1814 + 1184 1265 43343 81 chain 6999 chr1 248956422 + 155722569 155722650 LTR12E 1234 + 925 1006 77600 81 chain 4305 chr1 248956422 + 155788688 155788761 L1ME2z 1083 + 822 893 89467 44 1 0 4 9 8 15 chain 25282 chr1 248956422 + 155790663 155790951 AluSc5 308 + 0 288 48812 288 chain 6637 chr1 248956422 + 155801035 155801113 LTR12F 595 + 402 480 78852 78 chain 58266 chr1 248956422 + 155834826 155835478 SVA_D 2077 + 1264 2075 26880 48 1 148 269 0 10 138 0 2 196 chain 7037 chr1 248956422 + 155894280 155894389 U4 144 + 0 144 77476 35 3 14 34 1 25 36 chain 83998 chr1 248956422 + 155987602 155988639 MER11C 1089 + 0 1056 20808 55 5 8 89 1 0 94 0 9 62 0 4 65 1 0 160 8 9 135 0 4 5 1 0 38 0 1 318 chain 11747 chr1 248956422 + 156006387 156006532 MER47A 366 + 176 321 67316 145 chain 76060 chr1 248956422 + 156179222 156180190 LTR5_Hs 974 + 0 974 22549 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 77863 chr1 248956422 + 156181460 156182421 LTR5_Hs 974 + 0 974 22126 19 0 2 148 1 0 298 0 1 351 10 17 35 2 0 20 0 6 77 chain 28540 chr1 248956422 + 156187410 156187721 AluYa5 310 + 0 310 44053 132 1 0 178 chain 76285 chr1 248956422 + 156192164 156193088 LTR13 1007 + 0 968 22489 121 0 4 252 0 34 273 0 2 13 2 0 116 5 6 87 0 5 55 chain 34500 chr1 248956422 + 156216865 156217245 L1PA2 6032 + 5651 6031 38352 380 chain 142505 chr1 248956422 + 156327261 156328871 SVA_D 2077 + 0 2077 12890 5 1 0 5 1 0 6 1 0 12 0 8 353 0 3 202 0 40 121 0 37 16 0 40 61 0 278 160 1 0 7 0 65 658 chain 25118 chr1 248956422 + 156349252 156349547 AluSq10 312 + 0 305 49089 60 0 10 235 chain 51925 chr1 248956422 + 156556929 156557838 SVA_F 1814 + 609 1208 27349 219 89 0 27 1 0 30 46 0 62 0 15 39 1 0 80 0 1 119 189 0 7 chain 4634 chr1 248956422 + 156557148 156557212 SVA_F 1814 + 868 929 35494 14 2 0 43 1 0 4 chain 2231 chr1 248956422 + 156557212 156557237 SVA_F 1814 + 1043 1068 54618 25 chain 3041 chr1 248956422 + 156557295 156557337 SVA_F 1814 + 999 1043 35494 1 0 1 37 0 1 4 chain 3943 chr1 248956422 + 156557642 156557693 SVA_F 1814 + 862 913 53577 51 chain 3494 chr1 248956422 + 156557726 156557782 SVA_E 1901 + 812 867 32990 5 1 0 50 chain 3044 chr1 248956422 + 156557782 156557831 SVA_E 1901 + 990 1039 46148 49 chain 103490 chr1 248956422 + 156557838 156559138 SVA_E 1901 + 669 1901 17882 60 7 6 10 126 59 8 1 0 5 1 0 110 4 0 39 5 12 117 1 0 806 chain 5741 chr1 248956422 + 156557915 156558007 SVA_E 1901 + 947 1039 32990 92 chain 2100 chr1 248956422 + 156558007 156558041 SVA_E 1901 + 1116 1149 54434 25 1 0 8 chain 23088 chr1 248956422 + 156577047 156577723 Tigger3c 601 + 201 578 52229 116 336 37 29 19 23 113 4 0 59 chain 8092 chr1 248956422 + 156577746 156577840 MER34C2 569 + 462 556 74657 94 chain 74518 chr1 248956422 + 156918439 156919453 Tigger1 2417 + 1210 2251 22956 131 0 20 183 6 9 40 3 0 179 0 1 34 0 3 134 0 1 22 2 1 68 1 3 161 7 9 25 1 0 17 chain 3294 chr1 248956422 + 157020172 157020218 L1MA10 1535 + 1413 1456 97066 27 3 0 16 chain 12396 chr1 248956422 + 157049637 157049794 MER30 238 + 52 238 66144 54 3 32 100 chain 4235 chr1 248956422 + 157077777 157077823 MER63A 208 + 81 127 89915 46 chain 7790 chr1 248956422 + 157087137 157087253 Tigger3 1187 + 417 533 75395 80 2 0 6 5 7 23 chain 8928 chr1 248956422 + 157088997 157089109 Tigger3b 1229 + 353 468 72725 48 0 3 64 chain 7025 chr1 248956422 + 157231159 157231243 MER30 238 + 146 230 77511 84 chain 2824 chr1 248956422 + 157233334 157233394 MER21-int 1364 + 109 162 101502 12 19 12 29 chain 75909 chr1 248956422 + 157247705 157248818 L1PB1 5432 + 4337 5409 22604 198 12 11 82 11 6 170 0 2 9 4 0 288 1 2 12 3 0 17 1 0 13 16 11 9 2 0 53 2 1 16 1 0 43 1 0 16 24 12 19 3 0 19 2 0 24 1 0 21 1 0 13 1 0 5 chain 3352 chr1 248956422 + 157251087 157251435 MLT2D 439 + 43 344 96575 40 287 240 21 chain 543568 chr1 248956422 + 157253907 157260053 L1PA4 6152 + 8 6140 1103 414 44 0 159 0 4 972 0 2 156 0 1 284 0 5 320 0 15 1145 0 1 150 0 2 616 1 0 69 0 1 1816 chain 510136 chr1 248956422 + 157293974 157300373 L1PA7 6471 + 12 6457 2763 121 20 48 231 1 0 14 4 13 459 37 46 38 11 0 91 0 1 111 0 10 396 0 1 41 0 2 62 0 1 211 1 2 97 0 1 621 4 2 65 1 3 799 2 0 37 0 1 55 11 1 594 0 1 175 1 0 5 0 1 975 1 2 190 5 6 77 4 3 61 27 29 182 0 2 561 chain 490277 chr1 248956422 + 157315264 157322540 L1PA6 6164 + 0 6162 3414 316 5 7 126 19 0 120 1 0 218 0 17 205 1 0 1325 14 6 123 7 0 505 11 12 197 2 1 726 0 2 90 1098 7 290 6 0 386 1 0 120 0 1 916 1 2 280 6 7 151 4 0 6 chain 181352 chr1 248956422 + 157328956 157331522 MER4-int 2692 + 74 2692 10532 25 2 0 6 2 0 9 6 4 4 1 0 155 1 0 5 0 1 115 0 1 36 2 1 201 0 1 43 0 1 41 4 0 86 1 0 176 7 6 35 1 19 39 1 4 14 1 0 71 1 2 219 0 16 24 1 0 31 9 10 111 7 12 147 13 16 38 0 7 70 1 0 15 1 0 51 1 0 63 0 1 7 0 2 59 8 7 106 1 0 66 18 28 6 2 0 166 2 1 12 5 4 28 1 0 12 1 0 55 0 10 76 2 1 40 chain 26533 chr1 248956422 + 157356840 157357213 PABL_A 660 + 0 401 46928 85 1 0 4 0 1 93 1 2 39 0 44 66 17 0 67 chain 112371 chr1 248956422 + 157357785 157359358 PABL_A-int 1935 + 296 1870 16768 36 0 1 6 1 0 18 2 1 51 1 3 73 23 24 53 1 0 4 0 1 318 0 1 37 2 0 65 1 0 108 2 1 167 1 6 51 1 0 86 0 1 34 1 0 227 12 13 46 1 0 42 0 1 66 8 7 10 2 0 16 chain 42786 chr1 248956422 + 157433057 157433731 LTR66 600 + 0 531 32896 398 142 0 11 2 0 48 0 1 73 chain 22828 chr1 248956422 + 157465137 157465549 MSTA 426 + 0 426 52618 88 24 25 93 56 57 37 14 22 90 0 4 10 chain 190517 chr1 248956422 + 157500055 157503374 MER61-int 3695 + 0 2659 10087 46 1 0 148 39 0 66 13 12 138 1 2 139 0 1 55 0 1 32 1 97 26 0 1 28 3 8 12 10 19 15 0 5 238 8 1 33 2 1 121 0 2 290 760 25 61 0 5 65 0 2 5 3 1 82 11 12 167 9 5 143 1 2 547 chain 120646 chr1 248956422 + 157527952 157529963 L1PB1 5432 + 3452 5430 15418 64 3 0 8 7 0 3 0 7 157 86 91 103 0 1 106 1 0 142 2 6 213 2 0 6 17 21 20 4 0 12 0 2 20 0 1 181 5 7 82 11 16 7 0 4 161 0 1 209 36 10 25 1 0 4 3 2 14 17 11 17 0 5 29 2 1 15 1 0 36 99 82 15 10 9 13 1 0 13 1 0 21 1 0 5 chain 83543 chr1 248956422 + 157536761 157537799 MER11B 1079 + 0 1048 20905 316 1 18 249 5 2 5 0 3 102 1 0 77 8 2 274 chain 68868 chr1 248956422 + 157555826 157556593 L1PA3long 6157 + 5387 6157 24243 440 0 3 327 chain 3244 chr1 248956422 + 157591740 157591776 MER67C 710 + 10 46 97539 36 chain 64286 chr1 248956422 + 157591860 157592617 L1PA6 6164 + 4769 5537 25353 266 1 0 230 0 1 30 0 4 17 0 6 209 0 1 4 chain 52849 chr1 248956422 + 157592619 157593237 L1PA6 6164 + 5538 6156 28623 618 chain 4292 chr1 248956422 + 157602863 157602916 MER115 684 + 505 558 89559 53 chain 2884 chr1 248956422 + 157610636 157610677 L1PB2 3958 + 3584 3624 100962 33 1 0 7 chain 2644 chr1 248956422 + 157656084 157656157 L1MEf 1413 + 548 609 102754 17 4 5 23 0 3 5 16 0 8 chain 230104 chr1 248956422 + 157662247 157665363 L1P2 5180 + 596 3754 8744 33 0 26 84 22 1 47 3 18 188 13 0 8 25 32 11 0 1 194 1 0 145 7 3 179 0 9 504 0 2 126 0 4 52 1 0 54 39 14 647 0 37 549 0 1 15 0 4 110 12 13 47 chain 103794 chr1 248956422 + 157705351 157706963 L1PA11 4918 + 3044 4629 17840 154 0 1 368 18 34 65 18 17 5 0 1 90 35 36 178 0 1 331 10 0 60 11 10 7 2 0 70 2 0 16 7 6 14 133 103 18 chain 55372 chr1 248956422 + 157737506 157738160 L1PA7 6471 + 5813 6466 27753 68 0 1 254 1 2 321 3 0 7 chain 26796 chr1 248956422 + 157752160 157752516 THE1B 368 + 0 368 46545 44 0 15 115 1 0 20 2 1 98 1 0 75 chain 42406 chr1 248956422 + 157754084 157754626 MER41A 554 + 11 554 33125 76 5 6 461 chain 8617 chr1 248956422 + 157757389 157757497 L1PA7 6471 + 6362 6470 73414 108 chain 25070 chr1 248956422 + 157758975 157759299 THE1C 375 + 0 335 49167 168 0 10 6 1 2 149 chain 17540 chr1 248956422 + 157799607 157799801 L1PA4 6152 + 5958 6151 59193 39 1 0 154 chain 72687 chr1 248956422 + 157847693 157848503 L1PA5 6144 + 5330 6140 23381 810 chain 39273 chr1 248956422 + 157877086 157877539 L1PA6 6164 + 5709 6162 35169 453 chain 172865 chr1 248956422 + 157883871 157886016 HERVL-int 5654 + 3490 5634 10958 202 1 2 220 0 2 332 0 1 4 1 0 114 0 4 308 0 1 545 20 5 55 3 1 166 0 3 58 0 5 116 chain 515308 chr1 248956422 + 157901884 157908658 L1PA6 6164 + 0 6159 2501 357 33 49 103 2 1 18 0 28 426 1 0 20 0 16 428 1 0 70 0 1 817 4 2 454 2 0 399 0 1 513 1 0 616 1 0 359 1 2 167 0 5 463 1 0 664 673 0 180 chain 12631 chr1 248956422 + 157907807 157907982 L1PA6 6164 + 5982 6160 65750 20 1 2 131 0 1 11 0 1 12 chain 6730 chr1 248956422 + 157911169 157911289 MSTB2-int 240 + 85 197 78542 31 1 0 35 19 12 34 chain 4305 chr1 248956422 + 157915312 157915365 MER70B 575 + 63 117 89468 4 0 1 49 chain 8859 chr1 248956422 + 157967345 157967499 MLT1A0 366 + 48 200 72844 93 36 34 25 chain 40140 chr1 248956422 + 158147777 158148298 MER51A 677 + 0 661 34566 59 1 0 117 0 135 52 0 1 169 5 6 54 0 4 64 chain 78279 chr1 248956422 + 158192251 158193298 MER11C 1089 + 0 1063 22033 247 7 16 54 0 4 65 1 0 177 42 41 86 1 5 4 1 0 38 0 1 127 0 1 54 1 0 117 0 1 25 chain 114589 chr1 248956422 + 158223037 158224521 THE1B-int 1605 + 58 1597 16463 288 5 6 80 10 35 228 8 9 340 4 1 132 0 29 92 0 2 297 chain 43827 chr1 248956422 + 158227214 158227841 LTR76 689 + 7 667 32232 7 0 8 25 1 0 82 8 28 224 0 6 4 0 1 157 2 1 41 15 16 30 7 6 24 chain 82391 chr1 248956422 + 158234186 158235253 L1P3 4156 + 2659 4014 21153 44 0 4 775 0 1 4 4 3 40 23 307 177 chain 478620 chr1 248956422 + 158237269 158242658 L1PA3long 6157 + 635 6157 3663 141 0 128 676 0 1 1521 0 1 361 1 2 48 0 1 305 8 9 82 0 1 1992 1 0 253 chain 45180 chr1 248956422 + 158268392 158268869 L1HS 6032 + 5555 6032 31480 477 chain 146955 chr1 248956422 + 158269150 158271283 L1PB2 3958 + 1729 3838 12548 30 16 7 4 0 1 194 0 3 66 0 1 202 1 2 29 1 4 175 5 4 30 3 0 19 19 18 257 0 1 111 4 5 24 12 10 36 6 5 338 7 5 50 6 5 10 15 11 53 2 0 12 3 0 102 5 4 60 1 0 64 1 0 72 2 0 22 1 0 63 chain 502145 chr1 248956422 + 158303954 158309810 L1PA4 6152 + 0 5970 3054 480 0 2 317 5 6 533 1 2 76 0 5 780 0 2 955 1 0 7 0 1 183 3 0 460 2 102 437 0 4 312 0 1 832 0 1 472 chain 433709 chr1 248956422 + 158336097 158341261 L1PA4 6152 + 10 5179 4692 61 0 1 234 2 4 642 0 1 1069 0 1 167 0 1 129 1 0 2859 chain 103537 chr1 248956422 + 158386420 158387613 L1PA4 6152 + 3805 4992 17874 176 0 1 66 0 1 7 2 0 180 0 1 687 0 1 14 9 1 52 chain 68549 chr1 248956422 + 158468401 158469164 L1PA4 6152 + 5383 6151 24323 10 0 3 421 0 1 190 0 1 142 chain 107693 chr1 248956422 + 158512690 158513883 L1PA4 6152 + 4784 5977 17362 1193 chain 18461 chr1 248956422 + 158522520 158522801 L1PA8 5853 + 5582 5853 58147 25 3 1 71 11 9 17 4 0 35 2 1 19 1 0 93 chain 15258 chr1 248956422 + 158545301 158545474 L1PA4 6152 + 5964 6138 61966 27 0 1 146 chain 87395 chr1 248956422 + 158566822 158567793 L1PA3long 6157 + 5175 6147 20158 827 0 1 144 chain 12854 chr1 248956422 + 158588829 158589207 L1PA15 4387 + 3992 4357 65342 99 14 13 13 13 17 15 133 124 43 2 0 13 5 0 28 chain 25899 chr1 248956422 + 158623413 158623789 THE1C 375 + 0 375 47871 13 5 0 190 13 16 69 7 9 53 1 0 25 chain 165572 chr1 248956422 + 158640466 158642319 L1PA4 6152 + 4286 6151 11368 255 0 11 1265 0 1 333 chain 10451 chr1 248956422 + 158663721 158663863 L1PA8 5853 + 5713 5853 69516 27 2 1 19 2 1 92 chain 45029 chr1 248956422 + 158664079 158664665 L1PA8 5853 + 5245 5853 31562 319 1 0 29 1 2 5 1 0 8 2 0 74 1 0 7 0 30 5 2 0 16 2 1 19 2 1 92 chain 30195 chr1 248956422 + 158688453 158688836 L1PA7 6471 + 6047 6429 41854 260 16 15 107 chain 30027 chr1 248956422 + 158691258 158691675 L1PA8 5853 + 5441 5853 42025 121 1 0 20 7 9 17 2 0 70 2 1 9 2 1 51 2 1 19 1 0 93 chain 74526 chr1 248956422 + 158708882 158709705 L1PA3long 6157 + 5332 6156 22954 71 0 1 752 chain 31888 chr1 248956422 + 158738350 158738805 LTR19A 502 + 1 493 40424 183 1 38 82 1 0 40 9 10 78 0 5 6 28 23 27 chain 7638 chr1 248956422 + 158773695 158773897 MER67A 545 + 81 515 75785 46 22 29 42 57 281 17 0 1 18 chain 24468 chr1 248956422 + 158824084 158824435 THE1B 368 + 0 368 50083 40 0 15 20 9 13 84 1 0 130 11 10 56 chain 23490 chr1 248956422 + 158825451 158825878 L1PA15 4387 + 3845 4258 51604 48 2 0 20 3 0 19 1 0 151 31 30 18 1 0 50 6 5 12 9 7 11 2 1 15 7 4 4 0 1 17 chain 485153 chr1 248956422 + 158864391 158870814 L1PA6 6164 + 56 6161 3531 30 0 8 90 8 12 4 1 0 46 19 19 80 7 7 97 8 0 118 4 3 44 0 1 172 0 17 59 4 0 223 0 3 167 0 5 589 416 6 134 0 12 50 15 16 265 0 1 682 0 4 163 7 8 109 1 0 384 7 5 5 1 0 304 0 1 983 5 5 276 0 56 671 15 14 150 3 0 7 chain 16049 chr1 248956422 + 158872384 158872588 L1PA5 6144 + 5929 6132 60958 52 9 8 143 chain 545031 chr1 248956422 + 158886103 158892114 L1PA2 6032 + 0 6016 1027 573 0 4 164 0 1 473 1 0 4223 0 1 441 10 10 126 chain 3288 chr1 248956422 + 158919755 158919792 THE1C-int 1605 + 118 155 97135 37 chain 36978 chr1 248956422 + 158936365 158936788 L1P1 4361 + 3644 4074 36751 39 1 0 38 0 8 345 chain 552214 chr1 248956422 + 158952740 158958769 L1PA2 6032 + 0 6032 595 210 0 1 161 0 1 89 1 2 5568 chain 2799 chr1 248956422 + 159094210 159094291 MADE1 96 + 0 96 101649 19 27 42 35 chain 205065 chr1 248956422 + 159107570 159110295 L1PB1 5432 + 2474 5194 9535 25 8 9 78 0 4 18 10 6 6 0 5 401 1 0 17 0 1 106 8 0 32 0 18 6 1 0 75 1 3 250 14 15 172 0 1 191 0 1 132 2 1 50 17 2 286 1 0 163 1 0 81 0 2 286 1 0 161 7 9 15 14 12 20 1 0 13 1 0 11 15 9 27 chain 135263 chr1 248956422 + 159114707 159116208 L1PA4 6152 + 4013 5516 13512 967 1 3 533 chain 3925 chr1 248956422 + 159267266 159267308 MER4E1 777 + 663 705 91950 42 chain 432219 chr1 248956422 + 159269312 159274711 L1PA8 5853 + 449 5853 4715 96 0 1 31 4 0 48 13 9 511 1 0 442 0 3 126 0 1 21 0 2 185 0 10 91 1 0 248 0 4 417 0 7 257 0 5 432 13 0 190 0 1 54 7 8 656 10 9 267 0 1 94 0 1 241 0 1 5 1 0 85 2 0 392 0 1 162 1 0 44 6 4 66 10 8 54 2 1 22 1 0 90 chain 46370 chr1 248956422 + 159293806 159294314 L1PA3long 6157 + 5235 5742 30897 72 1 0 435 chain 304197 chr1 248956422 + 159323650 159327153 L1P1 4361 + 825 4328 6737 144 1 2 269 15 14 1839 0 1 82 0 1 103 1 0 278 0 1 591 1 0 155 1 0 23 chain 81569 chr1 248956422 + 159328994 159330037 L1PA11 4918 + 3464 4499 21320 263 0 3 541 0 1 56 6 0 60 13 12 7 2 0 68 2 0 13 1 0 11 chain 231611 chr1 248956422 + 159347110 159349900 L1PA7 6471 + 3662 6470 8706 90 0 1 1065 0 1 200 0 2 466 7 6 121 0 4 69 11 13 87 0 6 153 0 1 128 0 1 351 0 1 42 chain 202997 chr1 248956422 + 159400208 159403382 L1MA1 4479 + 1032 4126 9606 110 0 1 13 0 2 13 0 2 186 24 0 13 41 21 294 0 1 55 5 7 69 0 13 10 1 2 96 9 5 22 0 1 70 1 4 29 15 16 19 4 5 55 4 0 247 0 1 15 4 5 42 1 4 29 1 2 4 1 0 21 0 1 65 1 0 65 6 5 101 19 18 13 1 0 15 2 1 121 14 0 17 1 0 24 2 0 176 3 1 16 4 0 69 31 23 30 19 14 79 3 0 20 1 2 106 2 0 196 1 0 26 2 0 7 17 15 11 0 2 44 7 6 21 7 5 8 1 0 87 13 6 126 1 0 7 26 24 17 chain 184131 chr1 248956422 + 159411806 159413849 L1PA3long 6157 + 4114 6157 10381 551 0 1 713 1 0 778 chain 4319 chr1 248956422 + 159413891 159413944 MER6A 605 + 361 415 89364 49 0 1 4 chain 20280 chr1 248956422 + 159444958 159445183 L1PA3long 6157 + 5931 6156 56039 225 chain 114399 chr1 248956422 + 159449155 159450460 SVA_C 1631 + 0 1476 16490 215 1 0 93 7 0 219 0 1 189 0 40 94 0 138 487 chain 538651 chr1 248956422 + 159452959 159458963 L1PA3long 6157 + 4 6147 1417 148 0 1 102 0 1 485 4 6 20 11 139 761 0 3 1596 0 4 2877 chain 44164 chr1 248956422 + 159465048 159465721 MER51A 677 + 0 661 32043 132 0 9 11 1 2 16 7 9 14 21 1 127 1 11 188 19 20 43 16 0 33 0 1 44 chain 23350 chr1 248956422 + 159498807 159499168 THE1B 368 + 0 368 51854 44 0 15 48 29 25 33 8 7 28 2 0 132 1 0 36 chain 59357 chr1 248956422 + 159526630 159527267 L1PA3long 6157 + 3945 4582 26549 637 chain 15892 chr1 248956422 + 159532794 159532964 L1HS 6032 + 5861 6031 61167 170 chain 464276 chr1 248956422 + 159538219 159543614 L1PA4 6152 + 6 5517 4013 629 2 0 408 0 2 195 1 3 1119 0 5 21 0 98 410 16 16 42 0 1 985 0 1 22 0 4 698 1 0 6 0 5 59 0 1 781 chain 42953 chr1 248956422 + 159548706 159549241 L1PA10 4194 + 3567 4103 32803 21 2 1 25 0 1 72 3 4 412 chain 29238 chr1 248956422 + 159555627 159555939 AluYa5 310 + 0 310 42986 132 2 0 178 chain 29279 chr1 248956422 + 159555971 159556314 L1PA7 6471 + 6121 6464 42923 343 chain 549869 chr1 248956422 + 159603762 159609902 L1PA3long 6157 + 10 6157 754 278 0 6 874 0 1 495 0 1 537 5 7 116 0 1 2105 4 0 1726 chain 509273 chr1 248956422 + 159616079 159622571 L1PA7 6471 + 3 6470 2802 399 2 3 11 1 0 5 0 1 246 46 49 778 0 3 1134 17 0 352 9 7 228 0 1 5 6 21 238 3 2 62 3 7 57 2 1 864 2 1 46 0 7 357 13 17 684 52 0 31 3 2 326 2 1 45 5 16 127 18 20 56 1 0 4 0 1 252 chain 3821 chr1 248956422 + 159634339 159634383 MER65A 464 + 332 376 92709 44 chain 23527 chr1 248956422 + 159709134 159709435 AluYk4 311 + 0 296 51540 126 2 0 40 10 9 106 2 0 15 chain 501386 chr1 248956422 + 159730457 159736567 L1PA3long 6157 + 8 6152 3084 107 10 24 192 6 0 247 0 1 17 0 1 110 10 17 33 24 22 279 12 13 5 1 0 17 20 23 66 9 0 746 1 0 107 2 1 411 0 1 271 2 1 572 1 0 207 7 8 114 3 30 2501 chain 3007 chr1 248956422 + 159739467 159739504 LTR38B 592 + 9 45 99776 29 1 0 7 chain 129888 chr1 248956422 + 159761475 159762892 L1PA2 6032 + 4617 6032 14053 1402 2 0 13 chain 75728 chr1 248956422 + 159767795 159768763 LTR5_Hs 974 + 0 974 22650 288 0 1 180 0 1 186 1 0 163 8 15 19 20 18 103 chain 6451 chr1 248956422 + 159841347 159841429 MER115 684 + 510 592 79512 82 chain 6238 chr1 248956422 + 159873408 159873486 MER45A 178 + 48 126 80215 78 chain 3156 chr1 248956422 + 160150929 160150975 LTR46 455 + 0 40 98302 12 6 0 28 chain 3915 chr1 248956422 + 160469105 160469185 MADE1 96 + 0 95 92014 15 17 33 13 1 0 34 chain 149692 chr1 248956422 + 160507931 160509660 L1PA6 6164 + 4426 6161 12371 889 4 8 29 0 2 807 chain 292703 chr1 248956422 + 160512511 160516582 L1PA10 4194 + 145 4161 7052 8 1 0 4 1 0 8 17 10 12 2 0 12 3 0 7 3 1 9 12 8 8 2 0 9 11 9 21 2 0 15 1 0 8 100 70 6 1 0 10 1 0 15 7 0 8 1 0 80 2 1 68 0 1 421 15 16 37 0 1 53 0 1 312 1 0 81 0 1 14 5 0 350 0 8 63 4 8 77 1 2 418 0 1 17 1 0 228 1 2 17 7 3 64 1 0 198 8 12 177 0 1 21 0 1 180 0 1 156 0 1 262 8 10 122 1 0 226 3 0 34 1 0 11 chain 139083 chr1 248956422 + 160531444 160533312 SVA_A 1864 + 39 1864 13176 612 43 0 31 8 5 35 3 0 42 1 3 28 46 9 69 8 6 7 1 0 27 2 0 49 0 3 125 11 82 107 3 0 36 40 12 52 0 3 482 chain 2935 chr1 248956422 + 160532056 160532099 SVA_A 1864 + 1022 1059 72534 1 3 0 30 8 5 1 chain 2935 chr1 248956422 + 160532247 160532293 SVA_A 1864 + 979 1025 40627 46 chain 333301 chr1 248956422 + 160558465 160563084 L1PA11 4918 + 7 4504 6160 37 3 1 30 7 4 36 1 0 15 2 0 50 1 0 33 2 0 3 1 0 135 12 20 387 0 1 445 1 0 4 1 0 6 1 0 18 7 11 205 31 17 201 13 14 47 9 10 73 6 0 142 0 3 47 8 7 532 30 8 117 0 2 254 0 1 22 1 2 105 0 1 266 6 6 87 64 0 275 2 4 219 0 4 23 0 1 110 9 9 260 8 7 10 22 0 59 2 1 12 3 1 66 6 4 12 1 0 7 1 0 8 chain 179684 chr1 248956422 + 160594689 160597002 L1PA7 6471 + 4282 6464 10606 23 0 2 568 10 11 62 0 1 478 0 1 193 1 0 46 136 0 437 12 13 347 chain 86989 chr1 248956422 + 160599971 160601007 MER11B 1079 + 6 1064 20233 310 1 18 76 0 2 354 1 3 142 6 7 146 chain 4700 chr1 248956422 + 160618660 160618734 MER3 215 + 123 203 87272 45 5 11 24 chain 82167 chr1 248956422 + 160652138 160653095 LTR5_Hs 974 + 0 961 21208 117 0 1 341 0 4 448 1 0 50 chain 522357 chr1 248956422 + 160691753 160698247 HERVK-int 6823 + 0 6567 2163 5 1 0 11 1 0 6 1 0 20 1 0 20 1 0 38 1 0 21 15 12 11 6 0 274 0 3 34 1 0 205 2 0 26 1 0 20 2 1 161 0 2 148 1 0 441 1 0 368 7 2 6 1 0 49 64 0 2914 0 1 78 0 1 394 0 3 218 9 297 58 1 0 36 1 0 124 1 0 49 3 0 5 1 0 7 1 0 3 1 0 61 8 0 8 0 6 7 1 0 24 17 11 11 1 0 20 2 0 3 1 0 8 1 0 5 172 101 9 2 0 12 1 0 14 3 1 11 2 0 30 8 3 7 1 0 3 1 0 10 10 6 10 11 5 7 1 0 8 2 1 4 1 0 26 1 0 4 1 0 11 36 27 17 1 0 4 chain 2544 chr1 248956422 + 160746162 160746200 ORSL 269 + 76 116 103404 26 1 3 11 chain 4905 chr1 248956422 + 160771899 160771964 MSTD 398 + 250 316 86132 31 1 2 33 chain 369233 chr1 248956422 + 160783087 160787407 L1P1 4361 + 1 4341 5674 573 1 0 128 12 5 471 0 3 235 6 33 1715 0 1 985 1 0 155 2 1 22 2 1 12 chain 56574 chr1 248956422 + 160788402 160789025 L1PA3long 6157 + 5524 6147 27401 623 chain 11500 chr1 248956422 + 160826415 160826553 MER85 139 + 1 139 67749 138 chain 10606 chr1 248956422 + 160839529 160839769 MER2 342 + 110 336 69220 90 14 10 13 2 0 21 64 56 36 chain 510691 chr1 248956422 + 160892554 160900271 L1PA5 6144 + 3 6144 2737 117 0 14 19 3 15 549 7 6 448 15 6 130 4 103 1021 0 2 3 1693 0 456 6 5 1112 0 1 335 2 0 28 0 1 918 3 0 5 8 12 835 chain 30095 chr1 248956422 + 160900386 160900931 L1PA15 4387 + 3840 4365 41958 13 7 8 30 3 1 40 1 0 172 2 1 25 1 0 19 43 44 14 4 0 10 1 0 50 6 3 44 23 15 27 1 0 9 chain 75853 chr1 248956422 + 160913141 160914118 LTR5_Hs 974 + 0 970 22626 285 0 1 16 22 8 291 0 1 99 1 2 113 11 18 8 1 0 28 1 0 4 1 0 96 chain 118417 chr1 248956422 + 160920918 160922772 THE1B-int 1605 + 27 1605 15815 157 23 19 71 0 1 155 0 25 64 310 0 111 7 8 47 0 1 83 0 1 181 1 0 4 0 1 28 0 8 292 4 5 316 chain 24648 chr1 248956422 + 160923978 160924325 THE1B 368 + 0 356 49795 44 0 15 118 15 14 6 6 0 97 1 2 60 chain 121551 chr1 248956422 + 160932662 160934166 SVA_B 1603 + 7 1601 15250 15 12 22 27 1 6 463 0 40 33 0 37 158 9 48 50 41 0 103 1 0 135 1 2 455 chain 3628 chr1 248956422 + 160952252 160952309 LTR40b 463 + 301 359 94201 43 3 4 11 chain 23081 chr1 248956422 + 160968183 160968478 AluSz6 309 + 9 307 52239 111 0 1 156 2 4 26 chain 74329 chr1 248956422 + 161016834 161017804 LTR5_Hs 974 + 0 974 22998 169 1 0 115 0 1 182 0 1 73 5 2 113 1 0 163 8 15 19 20 18 48 0 2 53 chain 129694 chr1 248956422 + 161028987 161030453 SVA_B 1603 + 41 1593 14074 129 0 2 580 0 4 68 0 82 70 1 0 14 1 0 603 chain 72923 chr1 248956422 + 161063255 161064299 MER11C 1089 + 0 1059 23328 247 7 16 50 0 4 68 1 0 172 50 47 86 1 5 42 0 1 95 41 42 45 1 0 117 0 1 21 chain 3066 chr1 248956422 + 161115026 161115059 MER44D 709 + 75 108 99139 33 chain 23672 chr1 248956422 + 161144826 161145115 AluSp 311 + 10 290 51325 17 10 0 15 0 1 247 chain 12992 chr1 248956422 + 161153494 161153641 L1PA6 6164 + 6012 6159 65123 147 chain 23618 chr1 248956422 + 161298563 161298843 AluSc 308 + 0 278 51400 131 2 0 147 chain 3794 chr1 248956422 + 161367198 161367247 MER33 330 + 243 292 92896 49 chain 16983 chr1 248956422 + 161386589 161386863 MER57F 435 + 0 281 59828 83 0 4 89 17 24 23 15 12 34 1 0 12 chain 33953 chr1 248956422 + 161397116 161397575 LTR2 463 + 0 463 38742 107 9 10 263 2 3 28 5 8 20 1 0 24 chain 172033 chr1 248956422 + 161422264 161424313 SVA_D 2077 + 19 2076 10998 40 0 2 43 0 27 376 76 0 218 0 3 33 3 0 135 47 52 89 0 1 48 1 0 265 0 50 675 chain 2806 chr1 248956422 + 161423200 161423235 SVA_D 2077 + 1267 1302 51358 35 chain 86686 chr1 248956422 + 161433899 161434926 LTR5A 1029 + 0 1029 20275 147 1 0 358 12 14 246 0 2 16 1 0 246 chain 8030 chr1 248956422 + 161441532 161441615 tRNA-Leu-CTG 83 + 0 83 74816 83 chain 4938 chr1 248956422 + 161443303 161443362 tRNA-Gly-GGY 63 + 0 58 85948 54 1 0 4 chain 30515 chr1 248956422 + 161445601 161446014 MER11A 1151 + 1 502 41551 86 0 91 50 1 0 61 9 5 90 1 0 4 0 1 54 0 1 36 0 1 21 chain 8030 chr1 248956422 + 161448950 161449033 tRNA-Leu-CTG 83 + 0 83 74815 83 chain 4938 chr1 248956422 + 161450676 161450735 tRNA-Gly-GGY 63 + 0 58 85947 54 1 0 4 chain 30515 chr1 248956422 + 161452981 161453394 MER11A 1151 + 1 502 41550 86 0 91 50 1 0 61 9 5 90 1 0 4 0 1 54 0 1 36 0 1 21 chain 8030 chr1 248956422 + 161456331 161456414 tRNA-Leu-CTG 83 + 0 83 74814 83 chain 4938 chr1 248956422 + 161458107 161458166 tRNA-Gly-GGY 63 + 0 58 85946 54 1 0 4 chain 30515 chr1 248956422 + 161460392 161460805 MER11A 1151 + 1 502 41549 86 0 91 50 1 0 61 9 5 90 1 0 4 0 1 54 0 1 36 0 1 21 chain 8030 chr1 248956422 + 161463741 161463824 tRNA-Leu-CTG 83 + 0 83 74813 83 chain 4938 chr1 248956422 + 161465467 161465526 tRNA-Gly-GGY 63 + 0 58 85945 54 1 0 4 chain 30515 chr1 248956422 + 161467772 161468185 MER11A 1151 + 1 502 41548 86 0 91 50 1 0 61 9 5 90 1 0 4 0 1 54 0 1 36 0 1 21 chain 8030 chr1 248956422 + 161471122 161471205 tRNA-Leu-CTG 83 + 0 83 74812 83 chain 3124 chr1 248956422 + 161479550 161479585 LTR12C 1709 + 1120 1155 98605 35 chain 5333 chr1 248956422 + 161479634 161479700 LTR12C 1709 + 997 1063 84042 66 chain 20623 chr1 248956422 + 161521545 161521869 THE1B 368 + 0 348 55603 40 0 15 9 6 6 37 0 1 64 1 0 29 40 48 21 0 1 77 chain 3638 chr1 248956422 + 161531112 161531150 tRNA-Gly-GGA 38 + 0 38 94121 38 chain 6082 chr1 248956422 + 161536755 161536833 MER11A 1151 + 154 230 80794 45 2 0 31 chain 6925 chr1 248956422 + 161540240 161540314 tRNA-Asn-AAC 74 + 0 74 77868 74 chain 8661 chr1 248956422 + 161554713 161554819 MLT1B 390 + 261 367 73324 106 chain 20942 chr1 248956422 + 161603194 161603519 THE1B 368 + 0 348 55207 40 0 15 9 6 6 37 0 1 64 1 0 29 40 48 99 chain 8539 chr1 248956422 + 161636072 161636178 MLT1B 390 + 261 367 73597 106 chain 468329 chr1 248956422 + 161693554 161699296 L1PA8 5853 + 108 5853 3897 106 0 1 87 18 6 267 13 28 946 0 1 53 0 3 418 31 5 827 7 6 101 0 3 19 6 6 280 0 2 773 13 17 301 0 1 6 1 0 98 1 2 252 2 1 285 0 7 183 1 15 63 3 0 287 1 0 46 11 9 64 1 0 5 1 0 6 1 2 40 9 8 16 1 0 51 0 1 41 chain 5950 chr1 248956422 + 161699515 161699585 HY3 101 + 10 80 81276 70 chain 12842 chr1 248956422 + 161742138 161742310 L1MA2 4263 + 3877 4047 65373 81 9 7 82 chain 43802 chr1 248956422 + 161747607 161748209 MER61F 604 + 0 604 32251 87 3 4 70 0 1 5 2 1 173 8 7 185 1 0 41 2 5 25 chain 40274 chr1 248956422 + 161798621 161799290 L1PA15 4387 + 3682 4356 34461 118 8 15 55 0 1 17 2 0 45 1 0 70 12 12 74 13 15 26 1 0 53 12 22 11 6 5 35 18 15 42 2 0 14 6 1 28 chain 260231 chr1 248956422 + 161828882 161831955 L1PA5 6144 + 2226 6144 7964 84 0 3 211 125 0 211 0 955 299 0 1 203 0 6 222 0 1 875 0 4 843 chain 174977 chr1 248956422 + 161832290 161834271 L1P1 4361 + 15 1995 10836 1215 1 0 765 chain 44916 chr1 248956422 + 161834282 161834780 L1PA4 6152 + 5647 6146 31628 171 0 1 327 chain 26617 chr1 248956422 + 161842270 161842747 L1PB1 5432 + 4872 5427 46806 231 1 2 12 3 0 17 1 0 13 17 12 8 2 0 10 0 3 39 8 6 11 1 0 15 9 102 13 7 6 12 23 21 17 2 0 5 chain 27151 chr1 248956422 + 161937582 161937900 L1PA7 6471 + 6152 6470 46040 296 2 1 4 0 1 16 chain 19086 chr1 248956422 + 161943216 161943492 THE1D 372 + 90 372 57458 44 0 5 27 33 34 172 chain 27515 chr1 248956422 + 161959402 161959694 AluYa5 310 + 14 306 45562 292 chain 112577 chr1 248956422 + 162173319 162174566 L1PA4 6152 + 4890 6148 16736 280 0 1 76 0 4 145 0 6 746 chain 34109 chr1 248956422 + 162312730 162313105 L1P1 4361 + 3732 4107 38629 375 chain 39335 chr1 248956422 + 162321282 162321729 L1PA5 6144 + 5697 6144 35124 447 chain 8058 chr1 248956422 + 162403070 162403203 L1MA8 2339 + 1612 1759 74732 22 1 0 6 17 31 43 0 1 44 chain 50594 chr1 248956422 + 162419359 162419942 LTR14C 587 + 4 587 29350 499 0 1 79 1 0 4 chain 21945 chr1 248956422 + 162425418 162425797 L1MA8 2339 + 1830 2196 53908 10 4 0 94 4 0 24 2 0 51 1 0 90 66 64 33 chain 120197 chr1 248956422 + 162432972 162434448 LTR12C 1709 + 0 1709 15500 202 1 2 43 0 1 52 0 1 127 8 9 238 8 236 201 1 0 5 3 1 99 7 11 481 chain 528527 chr1 248956422 + 162448246 162455317 L1PA4 6152 + 10 6152 1894 152 14 79 522 0 1 276 1 0 1160 0 2 329 978 0 134 24 3 1108 0 2 162 0 1 82 0 1 183 0 1 618 4 0 550 1 3 659 0 1 95 1 0 18 chain 30732 chr1 248956422 + 162457573 162457918 SVA_A 1864 + 1523 1864 41364 188 4 0 153 chain 127405 chr1 248956422 + 162465416 162466810 SVA_D 2077 + 48 2066 14371 679 0 516 65 0 98 323 0 10 327 chain 12974 chr1 248956422 + 162479827 162479977 L1PA7 6471 + 6321 6469 65147 138 2 0 10 chain 22916 chr1 248956422 + 162480737 162481020 L1MA3 4352 + 2807 3090 52486 283 chain 124816 chr1 248956422 + 162737976 162739318 L1PA2 6032 + 3886 5228 14734 1342 chain 517155 chr1 248956422 + 162746009 162752151 L1PA6 6164 + 5 6162 2416 185 5 6 313 2 1 281 17 0 408 10 8 179 8 29 917 1 2 183 4 0 672 0 1 507 5 0 84 0 1 211 0 17 124 0 1 198 1 0 276 1 0 689 0 2 15 2 0 569 0 1 214 0 2 61 chain 47030 chr1 248956422 + 162788979 162789597 PABL_A 660 + 0 652 30646 24 0 15 15 5 14 16 0 9 72 2 0 8 0 1 57 1 2 46 8 7 222 0 2 142 chain 42617 chr1 248956422 + 162831410 162831940 MER41A 554 + 23 554 32991 264 7 8 259 chain 15668 chr1 248956422 + 162842616 162842953 L1PB1 5432 + 5114 5420 61441 24 1 0 9 16 11 9 2 0 50 6 5 15 1 0 43 1 0 21 3 0 11 9 0 10 13 10 14 2 0 16 15 14 15 1 0 13 1 0 16 chain 153122 chr1 248956422 + 162868436 162870470 L1PBa1 4058 + 58 2112 12173 104 1 0 17 0 2 90 0 9 152 1 0 151 1 9 29 11 10 25 1 0 126 1 4 53 0 1 187 1 2 77 1 3 68 2 0 5 0 2 262 8 5 5 0 3 64 2 1 143 1 0 285 0 1 4 1 0 155 chain 104619 chr1 248956422 + 162870470 162871977 L1PB1 5432 + 3937 5409 17692 41 23 20 498 5 4 19 0 5 84 0 1 4 1 0 13 3 0 185 2 4 19 0 8 42 11 1 218 3 0 10 0 1 21 1 0 12 30 23 50 2 1 16 1 0 44 1 0 15 1 0 4 19 8 19 11 8 15 2 0 20 1 0 21 1 0 13 1 0 5 chain 34173 chr1 248956422 + 162880817 162881183 L1PA3long 6157 + 4789 5155 38581 366 chain 21711 chr1 248956422 + 162996743 162996972 AluYb8 318 + 83 312 54216 229 chain 18724 chr1 248956422 + 163062106 163062467 Tigger3a 397 + 0 369 57875 18 109 117 29 0 1 126 1 0 78 chain 289543 chr1 248956422 + 163077782 163080993 L1PA4 6152 + 2938 6151 7141 2430 4 6 777 chain 3516 chr1 248956422 + 163081649 163081687 tRNA-Lys-AAG 49 + 0 38 95133 38 chain 323969 chr1 248956422 + 163097895 163101889 HERVL-int 5654 + 1645 5649 6338 88 1 0 4 0 1 332 0 9 6 9 0 163 50 0 140 0 4 243 1 0 4 0 2 7 0 2 11 0 3 157 0 15 54 0 9 569 0 2 81 1 9 604 0 1 422 0 8 540 3 0 70 0 8 193 0 1 26 1 2 214 chain 30554 chr1 248956422 + 163101895 163102344 MLT2A1 477 + 1 477 41522 44 15 31 64 0 1 22 9 16 16 1 0 157 1 0 45 1 0 13 8 12 7 1 0 29 1 0 9 0 4 6 chain 18953 chr1 248956422 + 163194915 163195224 L1PB2 3958 + 3534 3838 57591 11 1 0 72 1 0 64 1 0 15 12 14 28 0 3 13 2 0 16 9 8 39 5 1 20 chain 23108 chr1 248956422 + 163243044 163243363 L1PA8 5853 + 5447 5760 52199 117 1 0 45 2 0 69 25 23 39 2 1 19 chain 97418 chr1 248956422 + 163255349 163256407 L1PA3long 6157 + 3382 4441 18604 519 0 1 539 chain 5648 chr1 248956422 + 163462188 163462313 ERVL-B4-int 2334 + 500 626 82572 51 44 45 30 chain 18545 chr1 248956422 + 163478474 163478842 THE1B 368 + 0 368 58053 55 5 0 12 0 32 4 32 0 64 71 76 125 chain 75081 chr1 248956422 + 163480163 163481209 MER11C 1089 + 0 1063 22825 46 1 0 201 0 9 63 0 4 63 1 0 148 82 81 69 5 11 4 1 0 38 0 1 127 0 1 54 1 0 117 0 1 25 chain 21683 chr1 248956422 + 163481232 163481485 THE1B-int 1605 + 1347 1600 54252 253 chain 72434 chr1 248956422 + 163490081 163490867 L1PA3long 6157 + 5371 6157 23443 786 chain 16754 chr1 248956422 + 163515175 163515468 L1MA3 4352 + 0 286 60088 15 13 7 15 1 0 30 13 15 22 2 1 72 5 0 46 4 8 55 chain 220919 chr1 248956422 + 163591707 163594642 HERVH-int 3825 + 0 3566 9018 180 0 2 151 12 11 24 1 52 16 33 50 32 90 260 42 0 12 394 15 0 104 5 6 7 0 1 88 9 0 256 0 27 371 4 9 48 0 4 668 0 368 119 2 0 264 chain 207849 chr1 248956422 + 163760364 163763034 L1PA10 4194 + 1489 4160 9428 415 2 1 230 0 3 374 0 4 169 8 12 1002 1 0 6 0 1 33 0 1 48 8 12 135 4 6 45 4 6 82 3 0 5 0 3 30 22 5 33 1 0 10 chain 8670 chr1 248956422 + 163811511 163811619 MER30 238 + 127 238 73288 63 0 3 45 chain 21931 chr1 248956422 + 163910395 163910640 AluYc 301 + 38 285 53927 82 0 2 163 chain 21443 chr1 248956422 + 163924173 163924540 THE1D 372 + 16 372 54591 40 12 3 15 3 0 5 5 0 52 1 5 20 23 37 7 12 0 25 1 0 4 0 1 142 chain 132541 chr1 248956422 + 163952229 163954018 L1P3 4156 + 0 3913 13778 116 9 1 132 14 13 58 1 0 85 18 0 203 1 0 181 1 13 43 2 0 9 25 26 348 4 14 10 7 8 194 3 1769 242 0 365 83 chain 72909 chr1 248956422 + 163957335 163958390 MER11C 1089 + 0 1063 23334 247 4 13 53 0 4 69 1 0 147 67 66 91 1 5 4 1 0 38 0 1 125 0 1 56 1 0 18 26 18 81 0 1 25 chain 41743 chr1 248956422 + 163967440 163967938 MER9a3 513 + 15 513 33524 243 1 0 172 0 1 82 chain 459786 chr1 248956422 + 163989984 163995778 L1PA7 6471 + 0 6465 4132 402 4 5 386 2 128 47 0 24 509 1 2 90 7 4 398 0 2 38 1 0 260 0 1 165 0 555 64 16 8 271 0 2 95 6 14 14 7 13 18 5 7 4 1 0 300 1 0 10 27 1 12 0 1 158 0 1 19 0 7 12 0 1 620 0 4 277 1 0 291 1 0 4 0 1 376 1 0 77 0 2 438 0 1 130 28 0 26 0 2 5 2 0 13 5 0 142 0 1 7 chain 218725 chr1 248956422 + 164003953 164006362 L1PA3long 6157 + 3743 6157 9075 901 0 5 1508 chain 22025 chr1 248956422 + 164050900 164051226 L1PA8 5853 + 5534 5853 53800 12 1 0 18 1 0 45 2 0 73 1 0 5 26 26 27 2 1 19 1 0 93 chain 260342 chr1 248956422 + 164118153 164121125 L1PA4 6152 + 1512 4498 7963 22 0 5 781 1 0 938 0 3 1034 0 3 53 0 4 143 chain 20297 chr1 248956422 + 164134080 164134448 THE1B 368 + 0 368 56018 108 7 9 59 0 2 7 71 68 53 7 6 56 chain 465737 chr1 248956422 + 164166560 164172082 L1PA6 6164 + 610 6162 3970 131 0 2 255 0 6 139 2 8 1174 9 0 243 0 1 606 2 3 12 0 1 75 0 4 253 0 1 765 1 0 553 1 0 454 0 15 191 4 6 227 0 1 272 3 4 150 chain 24324 chr1 248956422 + 164191035 164191356 L1M1 2793 + 1328 1654 50298 228 7 12 86 chain 413186 chr1 248956422 + 164195305 164200615 L1PA7 6471 + 0 6457 4984 101 0 1 99 11 10 118 11 181 305 1 0 174 5 6 24 9 10 195 64 0 282 0 1 309 0 1029 288 0 1 638 2 3 373 7 10 510 0 4 317 0 4 369 0 1 110 0 5 117 3 0 26 1 0 197 0 1 292 8 0 142 0 1 11 5 4 29 17 19 140 chain 529568 chr1 248956422 + 164216030 164221933 L1PA3long 6157 + 6 5905 1848 981 5 1 1523 1 0 4 0 1 2505 0 1 848 2 1 34 chain 7495 chr1 248956422 + 164222584 164222676 MLT1A1 405 + 268 360 76143 92 chain 112359 chr1 248956422 + 164222683 164224306 L1PB2 3958 + 2204 3838 16770 40 2 0 183 0 1 55 0 2 7 9 6 61 2 1 12 8 3 141 6 5 111 0 27 65 1 0 270 0 6 21 0 1 71 0 1 10 5 3 56 1 0 11 5 0 65 44 36 70 1 0 46 0 1 25 1 0 64 1 0 15 0 5 74 1 0 63 chain 147894 chr1 248956422 + 164289476 164291123 L1P1 4361 + 1692 3340 12488 17 0 1 1630 chain 8455 chr1 248956422 + 164297343 164297456 L1PA8 5853 + 5741 5853 73783 19 2 1 92 chain 74281 chr1 248956422 + 164326931 164328056 L1PA15 4387 + 3210 4327 23005 152 2 1 187 3 12 187 0 1 4 1 0 56 21 14 6 0 6 55 3 1 41 1 0 124 11 12 31 15 14 16 1 0 55 1 0 16 4 0 9 8 7 50 6 3 44 3 1 12 chain 552440 chr1 248956422 + 164459203 164465253 L1PA2 6032 + 2 6032 583 254 1 0 1922 22 2 954 1 2 2896 chain 14000 chr1 248956422 + 164477571 164477821 THE1B 368 + 89 368 63597 18 3 4 20 19 50 19 2 0 4 3 0 6 0 3 74 10 9 72 chain 274270 chr1 248956422 + 164500182 164503503 L1P3 4156 + 0 3337 7597 236 29 28 21 16 17 20 1 0 86 0 1 277 28 29 1019 0 1 398 3 0 496 0 1 71 0 4 388 0 4 79 0 8 153 chain 20365 chr1 248956422 + 164503528 164503771 L1PA7 6471 + 6227 6470 55932 243 chain 28544 chr1 248956422 + 164548913 164549211 AluYa5 310 + 3 301 44046 298 chain 5359 chr1 248956422 + 164675342 164675409 MADE1 96 + 1 85 83913 33 0 17 34 chain 51203 chr1 248956422 + 164940033 164940599 L1PA5 6144 + 3710 4276 29166 566 chain 4830 chr1 248956422 + 165031872 165031931 L1MB2 1706 + 1635 1694 86539 59 chain 2947 chr1 248956422 + 165065642 165065673 MER33 330 + 37 68 100423 31 chain 23319 chr1 248956422 + 165065687 165065966 AluY 311 + 15 295 51903 117 0 1 162 chain 115884 chr1 248956422 + 165079033 165080564 THE1B-int 1605 + 0 1594 16260 15 0 2 124 0 1 4 1 0 38 1 23 209 13 39 449 4 8 212 0 1 8 5 4 179 12 13 218 0 8 39 chain 18637 chr1 248956422 + 165083613 165084945 THE1B-int 1605 + 18 1419 17361 56 1 0 199 0 6 120 0 64 148 9 8 322 18 19 459 chain 545338 chr1 248956422 + 165084965 165091107 L1PA3long 6157 + 5 6157 1017 143 0 1 1414 0 2 1132 2 0 728 1 2 87 0 1 112 0 1 75 0 1 256 0 2 841 0 1 125 0 1 36 0 1 1190 chain 2519 chr1 248956422 + 165091130 165091310 THE1B-int 1605 + 1419 1599 17361 180 chain 28837 chr1 248956422 + 165291781 165292085 AluYg6 310 + 0 304 43576 304 chain 5409 chr1 248956422 + 165375123 165375191 MER41A 554 + 395 464 83666 32 0 1 36 chain 13648 chr1 248956422 + 165478128 165478381 L1PB2 3958 + 3610 3838 64092 7 1 0 44 20 0 20 16 15 50 9 7 22 1 0 63 chain 2141 chr1 248956422 + 165607778 165608008 L1MC5 759 + 520 750 105592 19 2 0 8 176 180 17 2 0 6 chain 78057 chr1 248956422 + 165618706 165619561 L1PA4 6152 + 5288 6143 22087 855 chain 32342 chr1 248956422 + 165627024 165627444 MLT2A1 477 + 0 477 40082 48 0 2 88 0 1 29 1 5 135 5 0 77 1 57 16 1 0 19 chain 11866 chr1 248956422 + 165673370 165673518 MER41B 635 + 481 635 67085 30 0 1 35 0 5 83 chain 16252 chr1 248956422 + 165673606 165673812 MER41-int 2638 + 2429 2638 60679 23 0 1 22 0 3 94 1 0 66 chain 4242 chr1 248956422 + 165676199 165676250 L1MC4 1079 + 2 53 89862 51 chain 313438 chr1 248956422 + 165690451 165694219 L1PA6 6164 + 3 6162 6548 61 0 1 54 0 54 28 0 1 179 29 28 100 2 1 418 0 4 215 7 8 90 0 2309 78 0 1 44 0 11 216 0 2 289 0 5 1114 0 1 684 3 5 142 0 1 15 chain 33680 chr1 248956422 + 165800378 165800799 MER57A1 433 + 0 433 38945 58 1 12 215 1 2 146 chain 286504 chr1 248956422 + 165801135 165805039 L1PA7 6471 + 0 6461 7244 124 1 2 150 5 6 65 0 1 55 9 0 79 1 47 160 44 2873 998 2 5 71 0 9 828 0 5 147 9 0 19 8 12 140 323 0 152 0 1 154 6 5 212 10 9 132 chain 35531 chr1 248956422 + 165852182 165852631 L1PA8A 6298 + 5300 5746 37694 31 8 0 155 5 8 76 0 2 174 chain 6561 chr1 248956422 + 165883726 165883800 LTR12F 595 + 402 476 79117 74 chain 16760 chr1 248956422 + 165951904 165952142 Tigger3a 397 + 61 352 60081 14 14 68 22 1 0 187 chain 234608 chr1 248956422 + 165967418 165970208 L1PA6 6164 + 0 6159 8613 17 0 1 143 1 3354 456 0 2 389 0 4 538 0 1 205 0 1 377 2 0 250 0 1 269 0 8 143 chain 10540 chr1 248956422 + 166035956 166036085 LTR34 700 + 0 126 69333 12 2 0 19 1 0 95 chain 243333 chr1 248956422 + 166096869 166100198 L1PBa1 4058 + 13 3309 8395 22 2 1 11 29 26 91 1 0 5 5 4 237 0 9 10 2 0 125 1 0 11 2 1 52 49 48 22 29 4 43 5 7 86 0 1 277 3 2 51 2 5 161 3 4 122 19 7 209 1 0 150 0 3 149 5 0 494 1 0 6 7 0 35 1 0 70 3 2 118 6 8 11 4 0 304 17 33 253 1 0 6 chain 479541 chr1 248956422 + 166100216 166105731 L1PA4 6152 + 10 5516 3645 699 1 0 26 0 1 346 5 8 121 22 1 210 0 1 574 0 1 145 1 2 635 0 4 232 0 1 217 0 1 2281 chain 242501 chr1 248956422 + 166106932 166110257 L1PB1 5432 + 2247 5424 8411 248 2 0 306 0 4 130 7 11 81 2 1 697 7 0 9 7 0 472 6 5 55 1 4 273 0 1 84 3 0 256 5 4 97 0 1 117 123 11 26 1 0 7 16 11 11 3 1 50 2 1 16 1 0 43 1 0 16 1 0 4 14 8 16 11 8 14 2 0 24 1 0 21 1 0 10 1 0 19 1 0 4 chain 10102 chr1 248956422 + 166187030 166187154 L1PB1 5432 + 4966 5090 70192 124 chain 19272 chr1 248956422 + 166187349 166187688 L1PB1 5432 + 5106 5413 57268 8 1 0 23 1 0 10 1 0 10 5 1 11 3 1 50 2 1 16 1 0 44 1 0 15 3 0 15 9 0 16 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 9 chain 18781 chr1 248956422 + 166194289 166194552 L1PA8 5853 + 5587 5844 57804 18 9 7 67 1 0 11 1 0 50 2 1 19 2 1 83 chain 92914 chr1 248956422 + 166226471 166227521 L1P1 4361 + 3278 4326 19190 873 1 0 154 1 0 21 chain 305723 chr1 248956422 + 166267053 166270456 L1PA3long 6157 + 2757 6157 6701 118 1 0 1766 1 0 298 1 0 1218 chain 39399 chr1 248956422 + 166300366 166300929 L1PB 1623 + 826 1352 35080 138 0 1 314 2 3 4 1 0 16 1 0 9 37 0 41 chain 4137 chr1 248956422 + 166336824 166336885 ORSL 269 + 21 103 90524 28 6 27 27 chain 4348 chr1 248956422 + 166336955 166337013 L1MA4 2864 + 2747 2803 89182 19 2 0 37 chain 16243 chr1 248956422 + 166348173 166348342 AluYb8 318 + 145 314 60700 169 chain 138704 chr1 248956422 + 166430706 166432283 L1PA5 6144 + 4498 6077 13211 767 0 1 735 0 1 75 chain 66463 chr1 248956422 + 166495005 166495739 L1PA3long 6157 + 4059 4796 24836 183 0 3 551 chain 143418 chr1 248956422 + 166501341 166503006 L1PA4 6152 + 3672 5353 12819 514 0 3 47 0 3 108 0 4 38 1 0 140 0 6 344 1 2 472 chain 53395 chr1 248956422 + 166503789 166504473 L1PA8 5853 + 5176 5853 28432 388 1 0 44 2 0 70 10 15 7 7 0 40 2 1 19 1 0 93 chain 184829 chr1 248956422 + 166530198 166533053 MER4-int 2692 + 73 2689 10347 26 4 3 16 2 0 47 304 0 249 0 1 136 0 10 106 0 3 42 30 30 42 0 26 82 3 0 27 1 2 27 4 0 278 0 4 81 0 1 4 1 0 43 0 1 92 0 5 16 0 2 35 5 0 90 11 5 147 0 1 29 1 0 236 0 1 58 0 32 55 2 0 30 0 1 53 0 1 32 5 4 220 4 5 179 chain 33727 chr1 248956422 + 166533064 166533515 MER4A1 472 + 0 472 38898 206 25 46 220 chain 10800 chr1 248956422 + 166538881 166539049 LTR8 732 + 31 197 68858 8 7 0 25 6 7 97 0 4 25 chain 44365 chr1 248956422 + 166556866 166557592 MER57-int 2662 + 40 2331 31907 30 47 29 9 1 0 52 27 1573 96 0 7 72 3 0 115 30 64 244 chain 7038 chr1 248956422 + 166557601 166557685 LTR54B 464 + 2 87 77475 10 0 1 74 chain 20881 chr1 248956422 + 166602721 166602970 L1PA4 6152 + 5909 6152 55276 56 0 1 32 7 0 154 chain 86246 chr1 248956422 + 166654593 166655588 L1PA4 6152 + 4523 5517 20370 112 6 5 877 chain 58275 chr1 248956422 + 166666644 166667316 L1PA5 6144 + 5442 6132 26878 107 0 17 260 0 1 305 chain 68960 chr1 248956422 + 166667347 166668135 L1PA6 6164 + 5373 6162 24221 630 0 1 158 chain 181253 chr1 248956422 + 166695894 166697968 L1PA6 6164 + 4091 6161 10537 1224 1 0 835 3 0 11 chain 13762 chr1 248956422 + 166704330 166704506 L1MA5 2750 + 2383 2559 63932 176 chain 82212 chr1 248956422 + 166708984 166709929 L1PA5 6144 + 5191 6138 21199 150 0 1 148 0 1 647 chain 2795 chr1 248956422 + 166712423 166712464 L1M2 1805 + 459 517 101672 4 1 0 8 0 18 28 chain 24706 chr1 248956422 + 166717220 166717545 MER51B 395 + 0 380 49722 93 1 57 94 14 13 123 chain 174769 chr1 248956422 + 166722842 166725200 MER57-int 2662 + 99 2500 10851 89 0 5 121 1 0 284 2 0 91 4 0 17 1 0 160 5 13 41 54 53 251 0 1 96 1 0 45 0 2 370 0 1 126 15 44 85 3 5 46 34 25 235 0 1 22 0 1 4 4 0 9 0 1 44 0 1 32 8 22 58 chain 72792 chr1 248956422 + 166749894 166750696 L1PA3long 6157 + 5353 6155 23359 802 chain 224678 chr1 248956422 + 166752360 166755515 L1PA14 3548 + 319 3465 8903 137 1 0 37 3 0 227 0 1 428 1 0 279 5 0 5 0 1 49 4 7 21 3 12 227 3 1 11 11 11 29 4 5 116 0 9 95 0 1 69 9 10 251 1 0 27 0 2 102 14 13 24 0 2 5 5 4 151 1 0 225 0 1 24 3 1 14 2 0 47 2 0 5 2 0 105 12 8 12 3 1 6 1 0 68 24 23 114 5 1 36 4 2 12 1 0 6 0 6 9 1 0 44 6 0 7 chain 71179 chr1 248956422 + 166761798 166762613 L1PA5 6144 + 5326 6143 23722 21 0 1 457 0 1 337 chain 12507 chr1 248956422 + 166826827 166826985 L1MB3 1562 + 1143 1300 65978 58 1 0 99 chain 11197 chr1 248956422 + 166829830 166829958 THE1A 353 + 225 353 68249 128 chain 117649 chr1 248956422 + 166829958 166831517 THE1A-int 1579 + 0 1570 15950 15 0 2 15 2 1 255 0 1 380 1 2 179 6 7 27 0 1 95 2 7 27 5 6 109 2 3 13 13 11 345 5 6 63 chain 14884 chr1 248956422 + 166870129 166870493 MLT1B 390 + 3 390 62406 24 78 83 77 54 58 14 8 28 6 6 0 97 chain 4442 chr1 248956422 + 166872190 166872352 MSTB1 431 + 64 204 88642 37 93 72 13 1 0 18 chain 58246 chr1 248956422 + 166878190 166879114 LTR12 884 + 0 884 26884 57 1 5 261 133 1 19 42 1 30 0 25 159 0 103 169 0 1 53 chain 7071 chr1 248956422 + 166878509 166878642 LTR12 884 + 125 258 50589 133 chain 2233 chr1 248956422 + 166878661 166878703 LTR12 884 + 277 319 50589 42 chain 7882 chr1 248956422 + 166890282 166890489 L1PB1 5432 + 5239 5422 75176 42 1 0 21 64 44 24 7 6 16 2 1 11 1 0 18 chain 3269 chr1 248956422 + 166899967 166900006 MER5A1 166 + 47 86 97302 39 chain 29534 chr1 248956422 + 167000795 167001401 L1PB1 5432 + 4864 5422 42568 30 1 0 4 4 3 43 9 5 42 12 14 95 13 0 14 1 0 20 1 0 11 4 3 9 6 2 8 2 0 52 1 3 15 2 1 39 6 5 14 1 0 4 21 8 19 2 0 5 17 14 27 1 0 18 8 7 6 1 0 18 chain 95170 chr1 248956422 + 167026240 167027536 L1PB1 5432 + 4132 5411 18885 337 0 4 51 0 9 72 0 4 12 0 3 139 3 1 311 0 1 27 1 0 12 3 0 5 0 3 15 1 0 8 4 0 10 6 2 9 2 0 53 2 1 15 1 0 41 8 7 12 3 0 2 10 0 29 17 14 5 2 0 26 1 0 19 1 0 13 1 0 7 chain 99832 chr1 248956422 + 167029243 167030442 SVA_B 1603 + 0 1603 18315 13 1 0 6 1 33 17 14 1 344 0 1 8 0 232 147 4 126 29 9 45 28 3 0 107 0 1 33 1 0 285 0 1 140 3 0 6 chain 10318 chr1 248956422 + 167051022 167051165 L1PA8 5853 + 5704 5853 69768 36 2 1 19 1 0 13 0 8 72 chain 17643 chr1 248956422 + 167111019 167111879 L1PB1 5432 + 720 5422 59075 42 1 0 4 9 8 81 378 4248 10 1 0 25 8 6 12 2 0 3 2 0 9 2 0 52 2 1 16 1 0 44 1 0 15 3 0 17 30 19 12 2 0 26 1 0 18 5 4 12 0 4 14 chain 23328 chr1 248956422 + 167313934 167314218 AluSg7 307 + 18 301 51886 113 1 0 170 chain 30113 chr1 248956422 + 167337349 167337934 Tigger2 2703 + 870 1336 41931 69 27 32 137 3 0 20 117 0 69 6 4 35 13 10 82 0 1 7 chain 22300 chr1 248956422 + 167344873 167345157 L1PA8A 6298 + 5991 6291 53409 181 4 16 90 0 4 9 chain 26847 chr1 248956422 + 167364260 167364545 AluYa5 310 + 12 298 46478 259 0 1 26 chain 8208 chr1 248956422 + 167459187 167459293 DNA1_Mam 279 + 28 134 74392 106 chain 2833 chr1 248956422 + 167575398 167575431 MER61D 487 + 113 147 101391 20 0 1 13 chain 4064 chr1 248956422 + 167590590 167590637 THE1B 368 + 321 368 90995 47 chain 5918 chr1 248956422 + 167606324 167606396 MSTA 426 + 0 74 81405 16 0 2 56 chain 6957 chr1 248956422 + 167714724 167714796 tRNA-Pro-CCG 72 + 0 72 77751 72 chain 30993 chr1 248956422 + 167738498 167738935 MSTA 426 + 0 426 41133 101 2 0 62 14 6 30 5 6 31 6 4 186 chain 129390 chr1 248956422 + 167864922 167866528 Harlequin-int 5206 + 147 2557 14106 60 0 1 74 1 0 4 3 7 11 0 3 51 0 5 122 3 0 42 1 0 359 0 778 285 0 16 330 1 0 113 10 11 116 8 10 12 chain 3272 chr1 248956422 + 167882760 167882982 MIR 256 + 33 234 97272 22 172 151 28 chain 94427 chr1 248956422 + 167885988 167887072 L1PA5 6144 + 4423 5510 18978 440 0 1 4 1 0 171 0 1 134 1 4 116 1 0 216 chain 46197 chr1 248956422 + 167911208 167911779 LTR10C 591 + 0 591 30962 330 0 1 65 0 12 102 0 1 4 13 19 57 chain 5902 chr1 248956422 + 168044379 168044470 MER2 342 + 155 246 81474 60 0 1 4 6 5 21 chain 64283 chr1 248956422 + 168119791 168120586 THE1D-int 1627 + 815 1622 25354 224 0 1 4 4 12 238 0 3 325 chain 25575 chr1 248956422 + 168120591 168120956 THE1D 372 + 0 372 48360 168 0 4 6 15 17 81 8 9 87 chain 13025 chr1 248956422 + 168168514 168168745 MER30 238 + 0 238 65082 17 26 22 56 19 2 20 0 22 14 1 7 78 chain 25322 chr1 248956422 + 168175582 168176311 L1MA3 4352 + 3886 4325 48753 207 28 13 7 3 0 53 335 68 24 2 0 24 1 0 6 1 0 29 1 0 8 chain 3278 chr1 248956422 + 168329032 168329071 MLT2F 649 + 272 311 97204 39 chain 30539 chr1 248956422 + 168373622 168373957 L1PA4 6152 + 5806 6141 41533 335 chain 45118 chr1 248956422 + 168457190 168457732 LTR14C 587 + 51 586 31517 333 1 2 180 8 0 20 chain 84746 chr1 248956422 + 168478683 168479847 L1PA11 4918 + 3366 4508 20675 175 5 0 77 7 4 37 11 4 33 9 10 89 0 1 441 1 0 47 0 1 36 22 17 55 3 2 79 2 0 10 10 9 15 chain 154681 chr1 248956422 + 168485162 168487377 L1PA8 5853 + 52 5849 12072 20 2 0 10 2 1 12 52 16 120 39 10 64 0 4 54 33 57 205 0 1 52 2 3640 22 1 0 29 1 0 26 29 13 316 1 6 279 8 10 13 0 1 531 1 0 46 2 0 69 1 0 8 2 1 52 2 1 19 1 0 89 chain 354856 chr1 248956422 + 168546557 168550699 L1PA5 6144 + 2015 6143 5857 136 3 4 116 0 1 851 0 1 46 0 1 507 1 2 449 0 1 182 1 0 440 22 0 421 0 4 490 0 1 464 3 1 10 chain 79313 chr1 248956422 + 168563690 168564865 L1PB1 5432 + 4217 5424 21778 92 0 1 135 12 13 50 0 4 98 11 13 92 0 1 37 0 3 241 0 52 54 13 11 24 1 0 9 1 0 9 2 0 3 2 0 9 2 0 52 2 1 60 1 0 15 2 0 8 19 10 13 2 0 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 12 1 0 8 chain 75459 chr1 248956422 + 168746940 168747785 L1PA4 6152 + 3002 3844 22730 682 3 0 160 chain 27166 chr1 248956422 + 168813762 168814118 L1PA10 4194 + 3808 4161 46016 168 0 2 102 2 0 36 3 1 33 1 0 11 chain 117769 chr1 248956422 + 168836765 168838135 SVA_B 1603 + 0 1603 15921 12 8 41 621 0 77 73 0 124 28 1 0 627 chain 24899 chr1 248956422 + 168858334 168858639 L1PA8A 6298 + 5982 6290 49434 199 7 10 99 chain 53660 chr1 248956422 + 168886085 168886685 L1P1 4361 + 3469 4069 28343 600 chain 4379 chr1 248956422 + 168891385 168891661 L1ME1 1623 + 1251 1522 89005 24 168 170 33 28 21 23 chain 27203 chr1 248956422 + 168902726 168903033 AluYk4 311 + 0 305 45958 132 2 0 173 chain 96481 chr1 248956422 + 168908979 168910279 HSMAR1 1287 + 0 1283 18719 127 21 0 110 4 5 78 5 6 237 0 1 349 24 25 345 chain 107639 chr1 248956422 + 168927875 168929289 L1PA10 4194 + 2723 4150 17373 10 1 0 109 5 1 7 0 1 76 4 29 180 5 1 222 2 0 42 3 0 213 3 4 111 0 1 62 9 11 312 5 2 33 chain 37668 chr1 248956422 + 169052241 169052702 LTR2 463 + 0 463 36290 360 14 15 15 0 1 72 chain 32242 chr1 248956422 + 169097609 169097997 L1PA7 6471 + 6081 6470 40158 368 1 2 19 chain 4777 chr1 248956422 + 169123510 169123571 MER53 195 + 4 65 86815 61 chain 19921 chr1 248956422 + 169275288 169275508 AluYg6 310 + 93 310 56493 30 3 0 187 chain 110422 chr1 248956422 + 169290310 169291646 L1PA7 6471 + 5102 6454 17015 7 0 3 207 0 1 179 2 0 122 1 0 70 0 4 17 0 3 554 1 9 176 chain 124633 chr1 248956422 + 169330735 169332663 L1MA1 4479 + 2252 4189 14759 37 0 1 5 1 0 116 0 2 17 4 81 87 10 0 69 2 1 100 5 3 29 11 10 56 1 0 44 8 0 51 1 0 24 9 7 164 10 8 42 0 3 42 1 0 12 6 0 63 0 1 38 13 15 13 8 1 17 1 0 98 0 1 6 18 10 183 0 1 4 1 0 25 2 0 10 7 6 71 1 0 9 2 1 8 3 1 17 1 0 85 1 0 5 3 0 126 1 0 29 2 0 25 8 7 12 1 0 6 5 3 12 8 1 16 chain 108855 chr1 248956422 + 169334326 169335662 L1PA8A 6298 + 4943 6290 17202 384 11 8 100 0 1 48 1 0 86 0 2 68 17 20 10 0 1 9 0 2 458 0 6 144 chain 26512 chr1 248956422 + 169342094 169342461 THE1D 372 + 0 372 46967 168 20 26 146 2 1 31 chain 451065 chr1 248956422 + 169400697 169406037 L1PA5 6144 + 2 5374 4366 133 10 1 7 0 35 687 1 0 211 0 3 90 9 0 66 1 0 1001 0 5 68 10 0 36 1 0 53 19 20 233 0 2 517 1 0 454 1 3 410 0 1 191 0 1 248 0 2 139 0 1 473 0 3 172 4 8 21 0 4 73 chain 526940 chr1 248956422 + 169407632 169414027 L1PA7 6471 + 0 6468 1961 408 7 20 237 0 14 30 12 21 326 3 14 1072 1 0 24 0 5 184 0 1 163 0 2 111 7 0 417 0 1 234 0 1 223 0 4 100 1 0 389 1 4 94 6 13 538 16 18 6 0 2 31 0 1 333 1 2 559 0 4 63 1 2 55 0 1 232 2 1 508 chain 9655 chr1 248956422 + 169435139 169435287 L1MB8 1703 + 1430 1572 71150 5 2 0 47 13 9 81 chain 303670 chr1 248956422 + 169500279 169504186 L1PA6 6164 + 2595 6160 6751 450 0 1 254 0 1 261 0 1 140 1 0 1099 1 3 123 349 5 379 0 4 438 0 1 261 1 0 133 6 0 11 chain 220348 chr1 248956422 + 169504689 169507450 L1PA8 5853 + 3051 5853 9031 231 0 7 126 0 18 33 3 0 64 1 0 434 1 0 195 0 3 206 0 4 520 5 8 12 0 1 71 0 4 21 0 2 76 1 0 106 0 3 368 1 0 43 2 0 72 16 14 47 2 1 19 2 1 52 0 9 31 chain 3243 chr1 248956422 + 169527096 169527143 MADE1 96 + 0 46 97542 15 3 2 29 chain 41256 chr1 248956422 + 169533864 169534328 LTR2 463 + 0 463 33815 441 1 0 22 chain 14217 chr1 248956422 + 169567242 169567392 L1PA2 6032 + 5878 6028 63306 150 chain 68329 chr1 248956422 + 169639900 169640659 L1PA5 6144 + 5377 6137 24378 617 0 1 142 chain 331997 chr1 248956422 + 169655964 169660072 L1P3 4156 + 0 4132 6183 251 1 0 69 15 14 67 2 0 338 0 1 150 0 1 130 0 1 75 0 1 85 0 1 23 0 4 70 0 1 276 1 0 198 1 0 28 0 7 97 0 1 558 0 3 179 0 1 74 0 1 40 0 3 732 2 4 16 2 0 127 0 3 48 2 3 196 0 2 219 0 1 8 2 0 7 3 2 16 chain 116092 chr1 248956422 + 169661033 169669410 LTR12C 1709 + 0 1709 16214 338 0 43 83 4 5 181 120 79 32 50 0 76 6629 0 273 1 0 7 3 1 106 0 4 342 0 8 49 1 0 82 chain 9933 chr1 248956422 + 169661639 169661759 LTR12C 1709 + 928 1048 25412 120 chain 4139 chr1 248956422 + 169661791 169661841 LTR12C 1709 + 1080 1127 25412 30 1 0 8 2 0 9 chain 40972 chr1 248956422 + 169661917 169662412 LTR12C 1709 + 1203 1709 25412 14 7 11 342 0 8 47 1 0 84 chain 9454 chr1 248956422 + 169668048 169668209 LTR12C 1709 + 176 338 71597 35 38 39 88 chain 7307 chr1 248956422 + 169668209 169668292 LTR12C 1709 + 381 464 76646 83 chain 15302 chr1 248956422 + 169668296 169668477 LTR12C 1709 + 469 650 61913 181 chain 144 chr1 248956422 + 169668490 169668546 LTR12C 1709 + 941 997 58562 56 chain 38465 chr1 248956422 + 169669410 169669855 L1PA7 6471 + 5097 5542 35746 445 chain 6490 chr1 248956422 + 169669856 169669932 L1PA7 6471 + 5544 5620 79383 76 chain 71451 chr1 248956422 + 169669933 169670766 L1PA7 6471 + 5624 6459 23664 371 0 2 310 2 0 5 6 8 139 chain 204849 chr1 248956422 + 169683479 169686281 HERVH-int 3825 + 0 2972 9543 316 29 28 66 8 7 28 0 1 12 69 290 32 0 1 442 30 0 209 23 14 81 19 11 7 0 8 49 0 1 4 1 0 479 4 9 327 8 2 378 11 1 22 1 0 147 chain 37029 chr1 248956422 + 169687626 169688095 LTR2 463 + 0 463 36719 61 0 3 71 0 1 91 0 2 39 13 0 100 0 1 94 chain 253544 chr1 248956422 + 169712588 169715636 L1PA7 6471 + 3413 6466 8148 109 2 3 47 0 9 12 0 1 473 0 1 97 0 18 5 18 0 222 0 1 87 0 1 456 1 0 537 6 1 352 1 0 614 2 0 7 chain 7091 chr1 248956422 + 169749612 169749701 Tigger1 2417 + 1048 1136 77295 66 1 0 22 chain 118469 chr1 248956422 + 169871518 169873077 THE1B-int 1605 + 0 1605 15810 25 3 0 5 1 4 247 0 2 60 0 2 87 7 32 54 11 19 299 3 4 102 0 1 262 1 0 113 7 14 19 4 5 249 chain 11471 chr1 248956422 + 169873225 169873427 THE1B 368 + 157 368 67790 10 2 0 8 6 7 16 35 45 125 chain 106859 chr1 248956422 + 169881928 169883246 LTR12C 1709 + 0 1709 17452 295 1 3 6 1 0 165 0 1 82 1 0 98 0 278 184 1 0 5 3 1 106 0 4 54 0 1 113 0 102 63 1 0 24 0 10 32 1 0 82 chain 60662 chr1 248956422 + 169905667 169906360 L1PA5 6144 + 5450 6144 26189 566 0 1 127 chain 197822 chr1 248956422 + 170003694 170005867 L1PA4 6152 + 3972 6151 9783 14 0 1 364 0 4 1174 0 1 621 chain 148955 chr1 248956422 + 170007512 170009261 L1PA7 6471 + 4702 6467 12425 147 0 1 60 0 1 44 1 0 666 1 0 343 0 2 309 0 14 32 1 2 5 1 0 139 chain 6985 chr1 248956422 + 170013140 170013225 MLT1A0 366 + 245 330 77655 85 chain 6774 chr1 248956422 + 170025903 170026298 MLT1C 463 + 51 444 78402 19 0 1 34 290 287 52 chain 446306 chr1 248956422 + 170049159 170054975 L1PA8 5853 + 57 5853 4455 15 2 0 9 2 1 13 53 17 65 0 4 121 18 6 152 1 0 194 5 2 15 13 11 24 0 3 20 2 1 310 2 0 43 0 3 677 0 2 201 0 4 46 3 2 188 5 0 728 3 7 22 1 6 253 7 1 146 0 1 24 1 0 600 2 1 246 1 11 16 6 9 53 5 6 68 0 2 5 22 7 104 1 2 409 1 0 73 1 0 3 2 0 95 0 3 77 48 82 298 1 0 46 2 0 67 1 0 11 1 0 52 2 1 19 1 0 93 chain 283113 chr1 248956422 + 170058902 170062161 L1PA5 6144 + 2863 6132 7336 301 0 10 232 2 0 56 4 0 688 1 5 95 1 0 5 0 3 295 5 6 386 1 0 732 0 2 5 7 5 443 chain 26222 chr1 248956422 + 170076927 170077243 LTR12 884 + 0 433 47386 272 3 120 41 chain 62414 chr1 248956422 + 170118116 170119135 L1PREC2 3366 + 2059 3044 25773 124 18 21 173 0 1 369 10 5 17 0 1 31 5 4 41 11 7 11 72 58 30 3 0 6 27 13 30 14 16 27 chain 68682 chr1 248956422 + 170124587 170125336 L1PA2 6032 + 5278 6032 24290 174 0 4 239 0 1 336 chain 40221 chr1 248956422 + 170139845 170140317 L1PA7 6471 + 5995 6470 34507 261 1 0 198 0 4 12 chain 33570 chr1 248956422 + 170173566 170173990 L1PREC2 3366 + 1310 1735 39027 287 0 1 137 chain 26201 chr1 248956422 + 170206378 170206748 THE1C 375 + 0 362 47418 179 0 2 5 17 12 126 5 0 38 chain 5905 chr1 248956422 + 170224838 170224979 L1MA7 2200 + 1964 2071 81465 13 40 17 56 11 0 21 chain 191565 chr1 248956422 + 170235145 170237256 L1PA3long 6157 + 4040 6152 10043 1733 0 1 378 chain 363308 chr1 248956422 + 170279638 170283689 L1PA3long 6157 + 2093 6150 5760 226 0 1 912 0 4 457 1 0 957 0 1 403 0 1 1095 chain 141865 chr1 248956422 + 170418270 170419873 SVA_D 2077 + 53 2056 12950 163 1 0 546 40 0 146 0 439 41 0 1 55 0 1 611 chain 14253 chr1 248956422 + 170425083 170425310 L1PREC2 3366 + 2636 2865 63264 38 0 4 39 1 0 35 2 0 49 13 18 31 7 3 12 chain 442182 chr1 248956422 + 170426785 170432584 L1PA8 5853 + 50 5853 4535 22 7 10 13 49 13 125 20 46 23 18 6 313 0 4 8 0 6 11 7 1 548 14 15 279 0 2 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38086 48 0 4 6 0 37 25 36 0 17 4 69 18 45 6 108 1 0 4 0 1 243 chain 17825 chr1 248956422 + 170760912 170761139 L1PA7 6471 + 3980 4205 58854 24 8 6 195 chain 59515 chr1 248956422 + 170761139 170761867 L1PA7 6471 + 4206 4948 26502 468 0 4 179 9 19 72 chain 54816 chr1 248956422 + 170761871 170762536 L1PA7 6471 + 4949 5614 27940 665 chain 33146 chr1 248956422 + 170762537 170762996 L1PA7 6471 + 5618 6064 39406 26 0 3 53 0 2 98 0 9 14 48 21 220 chain 30753 chr1 248956422 + 170763008 170763375 L1PA7 6471 + 6069 6438 41346 196 0 1 39 3 4 129 chain 56638 chr1 248956422 + 170786890 170787796 L1PA15 4387 + 3460 4345 27375 35 15 14 4 1 0 42 0 1 257 2 0 75 2 0 44 1 0 77 1 2 34 3 4 51 14 13 17 14 13 42 1 0 21 4 0 7 9 8 46 6 3 33 13 12 14 5 0 16 chain 4102 chr1 248956422 + 170799156 170799199 L1PA7 6471 + 6252 6295 90758 43 chain 14347 chr1 248956422 + 170799199 170799366 L1PA7 6471 + 6301 6468 63116 167 chain 516281 chr1 248956422 + 170810752 170816890 L1PA6 6164 + 0 6134 2455 449 8 0 15 0 1 4 13 8 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248956422 + 171159031 171159638 MER41B 635 + 0 612 30600 117 11 12 337 3 2 79 0 5 60 chain 22525 chr1 248956422 + 171163769 171164015 L1PA2 6032 + 5785 6031 53080 246 chain 50737 chr1 248956422 + 171219224 171219815 LTR10C 591 + 0 591 29298 591 chain 48491 chr1 248956422 + 171224222 171224819 LTR10C 591 + 0 589 30122 420 17 9 160 chain 43069 chr1 248956422 + 171228189 171228718 LTR12_ 688 + 2 688 32735 147 0 24 269 0 133 113 chain 458668 chr1 248956422 + 171237248 171243396 L1PA8A 6298 + 100 6287 4163 19 49 42 12 1 0 4 1 0 4 0 1 6 4 1 15 75 62 42 1 0 9 22 14 77 2 0 12 4 3 9 1 0 3 1 0 76 1 0 139 66 68 59 6 7 337 7 5 496 4 5 15 19 20 657 8 11 4 0 1 14 0 1 9 0 1 140 2 3 466 0 4 56 0 2 73 0 1 118 0 1 129 19 13 246 1 8 232 1 2 17 0 1 172 0 2 29 0 1 63 0 1 41 0 3 244 16 17 7 0 2 24 0 2 307 0 11 19 1 2 329 10 12 329 0 2 79 0 2 239 11 12 57 1 5 84 0 2 6 2 0 16 0 9 181 6 7 23 0 12 62 chain 74016 chr1 248956422 + 171244112 171245277 L1PB1 5432 + 4311 5422 23088 12 10 12 292 2 0 170 3 2 6 0 1 287 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8765 0 618 chain 544922 chr1 248956422 + 172055830 172061851 L1PA3long 6157 + 0 6150 1034 152 0 1 623 0 128 171 1 0 2107 0 1 2967 chain 22223 chr1 248956422 + 172117318 172117622 THE1A 353 + 0 302 53517 110 1 0 92 16 15 85 chain 12943 chr1 248956422 + 172214309 172214455 L1PA5 6144 + 6000 6144 65186 37 2 0 107 chain 422768 chr1 248956422 + 172231190 172235994 L1PA4 6152 + 714 6140 4844 21 0 1 82 0 17 400 0 1 338 0 554 102 0 1 147 0 1 786 0 1 197 2 0 985 0 4 141 0 4 366 0 34 407 0 4 286 0 1 140 0 1 404 chain 51374 chr1 248956422 + 172244339 172244893 L1PA2 6032 + 5003 5557 29086 554 chain 16535 chr1 248956422 + 172300510 172300709 L1PA16 3655 + 2441 2640 60325 199 chain 511712 chr1 248956422 + 172301911 172308022 L1PA6 6164 + 0 6156 2679 177 7 19 4 1 0 587 0 17 28 2 1 707 1 2 57 0 2 733 7 1 210 1 4 14 0 1 305 0 1 311 3 4 344 0 1 173 1 0 118 0 1 132 0 1 413 0 4 277 1 0 217 0 3 434 1 0 9 3 0 69 0 7 56 1 0 44 0 2 341 0 1 124 0 1 53 0 1 145 chain 554270 chr1 248956422 + 172314248 172320392 L1PA3long 6157 + 0 6157 461 331 1 0 755 0 3 1674 0 1 878 0 2 247 1 2 1317 0 7 940 chain 34672 chr1 248956422 + 172423079 172423933 L1M1 2793 + 509 1265 38235 13 3 0 12 14 12 7 2 0 7 3 0 8 16 14 8 3 0 9 35 19 17 82 26 39 42 29 11 2 0 4 2 0 21 32 11 26 1 0 28 2 0 9 1 0 10 0 37 9 0 7 11 9 0 76 0 1 13 4 3 57 2 0 110 13 11 81 chain 523252 chr1 248956422 + 172431619 172437728 L1PA6 6164 + 0 6149 2131 266 1 0 101 0 1 199 1 0 837 0 1 184 0 14 730 0 1 287 0 1 418 0 1 64 0 4 80 0 1 89 0 2 413 1 3 194 0 3 6 3 0 465 0 6 308 1 0 381 1 2 250 0 4 217 3 6 406 0 1 203 chain 35728 chr1 248956422 + 172496201 172496663 LTR2 463 + 0 463 37581 360 38 39 64 chain 8103 chr1 248956422 + 172554379 172554480 MER33 330 + 17 118 74634 101 chain 132813 chr1 248956422 + 172571122 172572714 SVA_D 2077 + 98 2077 13752 735 1 0 4 0 1 17 1 0 33 34 66 82 0 2 54 0 1 9 17 370 605 chain 236743 chr1 248956422 + 172617255 172622001 MER61-int 3695 + 0 3695 8550 22 15 7 21 1 0 15 0 1 127 40 1 54 0 34 44 5 1 5 3 0 64 0 1 7 22 8 60 0 1 53 13 17 89 71 86 81 0 1 53 2 0 173 0 1 93 0 3 154 13 12 51 1 0 55 0 4 35 1 0 357 3 0 16 93 93 200 0 2 29 0 2 22 0 4 22 0 3 65 0 2 169 0 1 73 21 23 74 1 0 17 19 8 20 8 1 14 5 10 100 1 6 88 1 2 6 1 0 37 1 0 23 0 1 31 54 55 43 1109 0 76 1 9 13 4 0 2 6 0 9 0 7 81 1 0 5 0 1 74 3 56 45 9 10 121 0 4 25 1 0 104 chain 6009 chr1 248956422 + 172629312 172629391 MADE1 96 + 0 96 81040 29 0 16 19 0 1 31 chain 39722 chr1 248956422 + 172676483 172677031 MER41A 554 + 0 553 34877 113 13 4 96 39 53 287 chain 49382 chr1 248956422 + 172803664 172804420 LTR12 884 + 0 884 29806 55 0 107 47 1 0 147 0 22 270 0 1 15 134 0 18 0 133 69 chain 3034 chr1 248956422 + 172916457 172916659 MARNA 422 + 80 294 99467 11 4 6 20 136 146 31 chain 15218 chr1 248956422 + 172930869 172931127 L1PB1 5432 + 5162 5398 62019 6 2 0 51 1 0 17 1 0 45 1 0 15 13 1 8 0 1 20 1 0 6 1 0 16 2 0 22 1 0 22 1 0 6 chain 98391 chr1 248956422 + 172987333 172989799 L1PA3long 6157 + 3712 6157 18495 901 24 0 1529 0 3 12 chain 122794 chr1 248956422 + 172996095 172997675 THE1B-int 1605 + 0 1600 15063 413 0 1 19 0 25 230 34 22 80 2 8 344 0 2 29 6 5 385 1 0 37 chain 434484 chr1 248956422 + 173030276 173035889 L1PA7 6471 + 1069 6348 4676 27 1 0 5 0 1 99 9 13 2047 14 0 3 19 0 239 1 0 73 0 1 3 307 0 52 0 1 196 2 0 5 3 5 1157 12 1 624 1 0 66 1 2 15 3 16 423 2 1 204 chain 216662 chr1 248956422 + 173073957 173076439 L1P1 4361 + 2 2485 9127 17 0 1 2465 chain 451097 chr1 248956422 + 173153744 173158929 L1PA4 6152 + 15 5174 4363 566 0 4 253 17 0 96 0 3 632 6 9 1119 0 3 56 1 0 326 23 1 1843 3 4 244 chain 53376 chr1 248956422 + 173164706 173165362 PABL_A 660 + 0 660 28444 84 2 1 238 0 5 332 chain 19805 chr1 248956422 + 173219422 173219667 L1PB1 5432 + 4835 5103 56668 47 0 23 198 chain 475671 chr1 248956422 + 173227443 173234950 L1PA5 6144 + 0 6138 3732 143 14 0 466 0 9 7 1 0 452 2 1 140 1 0 504 7 5 1046 0 4 382 0 2 9 1 0 178 16 0 798 38 21 237 1867 534 635 0 3 259 0 1 268 9 7 27 chain 48393 chr1 248956422 + 173232942 173233539 L1P2 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chr1 248956422 + 173328588 173328681 L1PA8 5853 + 5760 5853 73675 93 chain 2916 chr1 248956422 + 173340371 173340403 MLT2B4 540 + 506 538 100710 32 chain 28711 chr1 248956422 + 173340856 173341231 THE1C 375 + 0 375 43778 184 13 12 119 0 1 59 chain 21542 chr1 248956422 + 173348121 173348486 THE1B 368 + 0 368 54447 111 5 6 26 2 0 32 64 68 125 chain 9423 chr1 248956422 + 173351583 173351694 L1PREC2 3366 + 1000 1111 71647 111 chain 22611 chr1 248956422 + 173365965 173366336 L1MA2 4263 + 3749 4104 52970 57 3 0 91 8 9 49 12 10 41 0 1 39 31 18 40 chain 38829 chr1 248956422 + 173367862 173368390 LTR12F 595 + 0 595 35484 103 0 1 41 2 0 23 1 67 88 0 2 67 4 3 168 13 14 18 chain 468643 chr1 248956422 + 173368422 173374127 HERV9-int 5642 + 12 5642 3890 105 7 8 572 22 0 19 6 0 132 3 1 252 5 4 9 1 0 20 1 0 174 1 0 4 0 1 90 1 0 18 0 1 156 1 0 7 1 2 760 12 4 678 0 1 2200 1 0 227 6 4 36 3 1 27 1 0 60 1 0 13 28 5 20 8 2 17 chain 37425 chr1 248956422 + 173375422 173375953 LTR12F 595 + 0 571 36461 67 0 77 15 36 0 18 17 8 21 0 9 177 1 0 179 chain 6226 chr1 248956422 + 173376171 173376239 L1PA7 6471 + 6034 6102 80251 68 chain 19223 chr1 248956422 + 173376240 173376471 L1PA7 6471 + 6111 6342 57321 231 chain 53027 chr1 248956422 + 173376471 173377172 LTR12_ 688 + 0 688 28568 130 32 16 332 7 11 24 1 0 175 chain 244473 chr1 248956422 + 173377198 173380422 HERV9-int 5642 + 5 3068 8366 175 20 53 282 3 11 70 21 15 42 0 33 110 2 1 298 160 0 11 3 0 31 1 2 448 16 1 454 51 0 1026 chain 4093 chr1 248956422 + 173379345 173379388 HERV9-int 5642 + 1644 1687 90835 43 chain 54294 chr1 248956422 + 173381754 173382451 LTR12_ 688 + 0 688 28120 109 0 1 53 21 4 342 8 7 36 0 8 128 chain 10955 chr1 248956422 + 173382451 173382572 L1PA7 6471 + 6338 6459 68609 121 chain 38566 chr1 248956422 + 173446473 173447011 MLT2A2 560 + 0 554 35667 168 37 40 146 0 2 43 3 14 141 chain 104507 chr1 248956422 + 173456905 173458123 L1PA6 6164 + 4946 6162 17756 372 0 4 503 6 1 20 2 1 315 chain 277157 chr1 248956422 + 173462482 173466768 L1PA11 4918 + 750 4629 7514 158 1 5 138 0 4 17 15 21 19 0 4 86 7 6 152 0 3 148 1 5 219 0 2 76 4 1 175 0 1 144 0 1 112 1 0 162 1 0 84 0 1 45 428 1 82 7 0 4 0 1 6 1 0 22 0 1 63 1 0 5 1 2 130 0 1 27 6 5 84 0 1 173 1 6 165 0 2 76 0 12 77 0 3 178 1 0 284 0 1 174 9 24 120 0 1 58 5 0 32 1 2 27 8 7 76 2 0 11 0 1 4 1 0 19 134 104 18 chain 122102 chr1 248956422 + 173470169 173471729 THE1B-int 1605 + 13 1600 15180 12 3 0 5 3 6 392 3 28 303 4 0 537 0 1 127 0 4 134 0 1 37 chain 45551 chr1 248956422 + 173493088 173493600 MER9a3 513 + 0 513 31283 170 0 1 342 chain 36765 chr1 248956422 + 173493600 173494091 MER41A 554 + 46 553 36912 131 8 12 133 11 22 29 0 1 179 chain 53303 chr1 248956422 + 173498156 173498986 PABL_A-int 1935 + 1106 1915 28465 70 0 2 64 5 0 273 2 0 85 56 49 78 4 5 106 1 0 17 1 0 9 22 15 8 1 0 28 chain 30330 chr1 248956422 + 173500000 173500381 MER41A 554 + 161 554 41730 26 0 10 270 6 7 60 1 2 18 chain 357367 chr1 248956422 + 173540895 173545014 L1PA6 6164 + 2038 6160 5828 296 2 0 840 4 5 10 0 1 848 0 1 229 0 1 93 0 4 673 1 0 276 1 0 387 5 6 446 2 0 6 chain 41779 chr1 248956422 + 173586499 173586989 L1PA8A 6298 + 5800 6291 33504 387 1 2 102 chain 27442 chr1 248956422 + 173593537 173593894 L1PREC2 3366 + 236 587 45653 11 1 0 10 3 1 27 1 0 120 1 0 65 2 1 116 chain 42562 chr1 248956422 + 173603280 173603785 HERV1_LTRa 508 + 0 502 33024 42 1 0 50 2 4 373 4 0 33 chain 139348 chr1 248956422 + 173612572 173614262 SVA_D 2077 + 16 2056 13150 578 0 40 127 40 0 151 1 0 35 10 0 4 0 1 40 0 1 11 0 305 37 0 1 7 2 52 32 0 1 15 0 1 8 0 1 18 1 0 259 11 12 303 chain 347042 chr1 248956422 + 173618125 173623607 L1PA11 4918 + 7 4629 5948 7 1 0 25 5 3 36 4 1 36 16 13 30 6 11 11 1 0 6 0 3 24 2 0 5 2 1 219 0 1 10 0 5 14 1 0 371 0 1 284 1 0 225 1 0 68 315 0 361 1 4 33 3 0 302 204 0 79 1 0 12 1 0 33 2 0 52 1 2 52 10 14 17 0 1 166 1 0 525 6 5 5 0 1 486 11 12 109 1 2 6 1 0 548 0 8 76 5 0 62 319 7 77 2 0 15 1 0 11 141 111 18 chain 33075 chr1 248956422 + 173630854 173631276 L1M1 2793 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211 1 2 175 11 8 859 0 4 66 0 4 444 1 0 58 0 2 147 0 15 209 0 2 122 0 3 546 0 1 62 0 4 1182 chain 395579 chr1 248956422 + 173759484 173764856 L1PB1 5432 + 62 5420 5225 389 1 2 92 1 2 64 0 4 167 0 1 254 0 2 190 5 6 160 1 0 7 2 0 5 57 42 95 0 4 53 4 9 697 2 0 70 1 11 51 0 8 48 12 7 83 0 2 242 0 1 12 2 0 111 11 1 359 0 5 38 0 3 35 10 9 300 4 3 24 1 2 31 12 4 124 0 1 70 1 0 489 15 14 98 0 2 9 0 4 30 9 14 105 0 1 375 1 0 8 4 3 20 2 0 13 16 11 9 2 0 53 2 1 16 2 0 44 1 0 15 3 0 7 15 6 18 25 28 15 1 0 21 1 0 13 1 0 16 chain 2811 chr1 248956422 + 173768675 173768705 L1MB2 1706 + 1639 1669 101595 30 chain 14875 chr1 248956422 + 173792914 173793146 Tigger3a 397 + 43 326 62419 32 17 66 51 0 6 23 9 5 100 chain 526968 chr1 248956422 + 173811695 173818161 L1PA6 6164 + 0 6160 1959 283 11 10 105 16 15 379 1 18 276 0 3 1200 0 1 4 2 0 39 0 1 118 12 6 728 1 0 1179 0 4 805 323 3 587 0 1 389 2 0 6 chain 25432 chr1 248956422 + 173908218 173908512 AluSq10 312 + 11 305 48580 294 chain 12898 chr1 248956422 + 173944417 173944566 L1PA5 6144 + 5983 6131 65258 96 1 0 52 chain 3653 chr1 248956422 + 174077880 174077938 MER51A 677 + 290 420 94009 17 1 73 40 chain 90853 chr1 248956422 + 174081138 174082336 L1PBa 3878 + 1051 2236 19530 218 2 1 161 1 0 179 17 13 270 29 22 321 chain 6663 chr1 248956422 + 174102799 174102880 Tigger1 2417 + 205 286 78765 81 chain 2803 chr1 248956422 + 174106904 174107044 L2a 937 + 263 399 101630 7 10 0 25 80 86 18 chain 25255 chr1 248956422 + 174109383 174109741 THE1B 368 + 0 368 48862 44 0 15 113 1 0 20 2 0 16 16 15 71 1 0 74 chain 43537 chr1 248956422 + 174122211 174123321 L1MA3 4352 + 3584 4258 32423 60 3 2 88 6 2 353 513 83 8 1 0 78 chain 457713 chr1 248956422 + 174143574 174149423 L1PA7 6471 + 0 6144 4189 230 14 29 100 13 14 30 13 0 188 12 13 378 0 6 1303 0 1 278 0 14 22 11 615 326 1 5 658 0 2 49 1 0 8 1 0 234 0 1 170 0 2 279 0 1 574 344 0 91 0 3 86 2 0 328 0 1 105 chain 13261 chr1 248956422 + 174162878 174163020 L1PA2 6032 + 5807 5949 64688 142 chain 46670 chr1 248956422 + 174178389 174178998 L1PA8 5853 + 5251 5853 30785 313 1 0 45 2 0 66 15 13 52 2 1 19 1 0 93 chain 25817 chr1 248956422 + 174185865 174186162 AluSp 311 + 4 300 47993 174 1 0 122 chain 3125 chr1 248956422 + 174212300 174212367 MADE1 96 - 0 96 98578 24 20 49 23 chain 36839 chr1 248956422 + 174229986 174230395 L1PA4 6152 + 5729 6139 36854 88 0 1 321 chain 81564 chr1 248956422 + 174320520 174321584 MER11B 1079 + 0 1064 21322 220 0 5 312 0 1 4 6 5 194 10 0 29 0 2 45 8 9 19 0 1 33 0 1 150 0 1 18 2 1 14 chain 58378 chr1 248956422 + 174354975 174355624 L1PA4 6152 + 5503 6151 26840 631 1 0 17 chain 93928 chr1 248956422 + 174409137 174410275 MER11A 1151 + 7 1151 19051 288 1 0 6 1 0 25 0 2 52 0 1 292 6 9 123 2 1 56 3 0 179 0 3 43 1 0 22 4 8 34 chain 4086 chr1 248956422 + 174417071 174417117 MADE1 96 + 49 95 90873 46 chain 127937 chr1 248956422 + 174436738 174438174 L1P1 4361 + 650 2085 14287 73 1 0 1362 chain 73967 chr1 248956422 + 174462866 174463671 L1PA3long 6157 + 5351 6157 23102 656 0 1 149 chain 9874 chr1 248956422 + 174481780 174481887 L1PA2 6032 + 5925 6032 70673 107 chain 64205 chr1 248956422 + 174489102 174489824 L1PA5 6144 + 5057 5780 25371 711 1 0 4 0 2 6 chain 3690 chr1 248956422 + 174506283 174506397 MER58B 340 + 209 324 93680 16 58 59 40 chain 160807 chr1 248956422 + 174561076 174563014 L1PA7 6471 + 4518 6470 11695 144 0 8 79 0 1 445 0 4 5 1 0 8 0 1 279 0 2 8 2 0 115 1 4 55 1 0 34 1 0 52 1 0 331 0 1 376 chain 20984 chr1 248956422 + 174601403 174601652 L1PA6 6164 + 5912 6159 55147 242 2 0 5 chain 438743 chr1 248956422 + 174617734 174622852 L1PA4 6152 + 0 6139 4594 16 0 1 65 0 1 74 0 76 860 0 2 511 0 1 670 0 1 151 0 4 51 21 22 934 0 933 470 0 1 1295 chain 186650 chr1 248956422 + 174633015 174635044 L1PA2 6032 + 3999 6030 10267 1190 0 1 320 0 1 519 chain 60201 chr1 248956422 + 174638396 174639049 L1PA2 6032 + 5379 6032 26320 653 chain 162088 chr1 248956422 + 174708787 174710897 L1P3 4156 + 411 2531 11607 203 7 8 70 22 20 429 2 0 56 3 4 193 0 3 115 21 33 253 0 2 166 21 7 202 0 1 142 0 5 101 0 1 70 0 2 34 chain 2362 chr1 248956422 + 174712056 174712187 LTR12C 1709 + 837 871 104403 23 97 0 11 chain 10386 chr1 248956422 + 174885090 174885218 LTR19A 502 + 374 502 69645 128 chain 3762 chr1 248956422 + 174921222 174921264 MLT1B 390 + 346 388 93127 42 chain 19143 chr1 248956422 + 174928984 174929207 L1PA5 6144 + 5902 6126 57405 91 2 3 130 chain 73582 chr1 248956422 + 175057229 175058091 L1PA7 6471 + 5011 5874 23197 698 0 1 164 chain 70688 chr1 248956422 + 175175246 175176035 L1PA5 6144 + 5354 6144 23829 678 0 1 111 chain 293021 chr1 248956422 + 175234086 175238178 L1PBa1 4058 + 10 4040 7042 27 15 12 6 1 0 178 3 1 75 11 6 116 3 1 47 0 21 66 1 0 50 10 14 187 2 3 277 12 11 79 0 1 479 2 0 421 0 2 122 10 0 61 0 1 137 0 7 49 17 9 128 1 0 616 2 3 74 0 1 61 13 15 61 1 0 11 0 4 27 4 12 16 0 2 42 7 0 6 3 0 107 12 10 19 11 10 41 2 0 108 3 1 9 43 4 4 1 0 12 8 0 15 3 1 20 12 7 21 1 0 9 12 9 5 1 0 7 1 0 7 1 0 16 2 1 42 chain 11031 chr1 248956422 + 175240682 175241234 L1PB1 5432 + 5168 5417 68512 52 19 17 44 350 55 10 2 0 27 1 0 18 1 0 11 1 0 11 1 0 4 chain 30008 chr1 248956422 + 175242254 175242631 MLT2A1 477 + 0 381 42041 142 0 1 24 2 6 150 1 0 58 chain 452414 chr1 248956422 + 175242966 175248539 HERVL-int 5654 + 0 5654 4322 56 6 7 6 1 0 99 0 3 524 0 2 5 8 6 399 11 12 412 2 3 369 0 2 56 2 0 109 0 9 242 0 11 22 0 1 5 1 0 75 8 9 41 0 1 86 0 1 120 0 2 265 2 14 295 0 3 65 0 20 224 0 8 958 1 0 4 1 0 206 0 6 461 8 9 146 3 5 47 1 2 221 chain 2456 chr1 248956422 + 175268716 175268742 MLT1N2 510 + 0 26 103874 26 chain 257229 chr1 248956422 + 175290181 175293383 L1PA8 5853 + 2592 5853 8051 283 19 11 145 3 4 278 1 0 4 0 3 488 18 6 370 4 5 474 17 28 13 0 1 11 0 12 281 0 2 434 0 38 81 1 0 44 2 0 70 2 1 10 1 0 47 0 17 7 1 0 93 chain 5055 chr1 248956422 + 175310894 175311038 MER20 218 + 29 198 85385 50 61 85 14 3 4 16 chain 3722 chr1 248956422 + 175312681 175312725 MLT2B1 522 + 478 522 93462 44 chain 54411 chr1 248956422 + 175325232 175325853 L1PA5 6144 + 5347 5969 28080 29 0 1 592 chain 335922 chr1 248956422 + 175436506 175440262 L1PA4 6152 + 2112 5878 6131 161 0 1 39 1 0 43 3 0 73 0 3 150 0 4 1650 7 8 104 0 4 942 0 1 583 chain 63318 chr1 248956422 + 175489906 175490719 L1PA11 4918 + 3703 4512 25558 305 0 1 323 1 0 63 1 0 12 2 0 68 3 1 25 0 1 10 chain 10244 chr1 248956422 + 175522320 175522542 L1PB1 5432 + 5221 5420 69912 15 1 0 44 1 0 11 62 46 9 2 0 24 1 0 21 1 0 13 1 0 16 chain 23871 chr1 248956422 + 175524971 175525307 THE1C 375 + 0 334 50995 116 12 29 8 20 0 31 2 3 147 chain 4005 chr1 248956422 + 175543819 175543868 U5 65 + 0 49 91414 49 chain 65986 chr1 248956422 + 175557568 175558285 L1PA2 6032 + 5316 6032 24965 5 1 0 711 chain 33228 chr1 248956422 + 175589617 175590009 L1PA7 6471 + 6080 6466 39323 374 6 0 12 chain 17773 chr1 248956422 + 175811764 175812173 L1PA13 3608 + 3199 3548 58927 68 7 4 4 0 1 60 1 0 20 2 0 22 46 18 48 10 6 18 1 0 18 26 18 14 1 0 6 7 1 7 1 0 9 6 0 7 chain 5567 chr1 248956422 + 175826176 175826269 L1MA4 2864 + 2724 2809 82952 14 9 3 26 3 1 41 chain 4298 chr1 248956422 + 175834631 175834692 MER49 923 + 0 63 89511 7 0 1 22 1 2 31 chain 28363 chr1 248956422 + 175921060 175921413 THE1A 353 + 0 353 44327 111 1 0 79 0 2 6 1 0 155 chain 9579 chr1 248956422 + 175922595 175922825 LTR49 580 + 342 580 71312 13 15 25 47 51 49 40 1 0 15 7 8 41 chain 9167 chr1 248956422 + 175933516 175933634 L1PA7 6471 + 6342 6459 72191 75 1 0 42 chain 15655 chr1 248956422 + 175934055 175934274 MER30 238 + 0 238 61459 95 0 2 8 6 0 9 4 27 97 chain 5724 chr1 248956422 + 175937460 175937530 MER21B 843 + 672 742 82242 70 chain 549442 chr1 248956422 + 175992262 175998471 L1PA3long 6157 + 4 6157 786 75 0 1 482 0 1 5 0 4 2617 1 0 1845 0 1 662 2 1 58 79 18 383 chain 96921 chr1 248956422 + 176057345 176058770 SVA_A 1864 + 8 1864 18663 5 1 0 34 5 0 11 3 0 5 0 3 27 0 11 73 2 0 416 0 37 90 3 0 39 3 0 6 131 466 47 4 38 29 0 16 123 3 1 29 16 26 307 0 4 13 chain 135831 chr1 248956422 + 176086596 176088205 L1PA6 6164 + 4488 6106 13455 9 0 2 140 5 6 405 0 1 263 1 5 581 0 1 205 chain 9818 chr1 248956422 + 176105872 176106011 LTR8 732 + 0 149 70784 19 0 1 4 6 15 110 chain 2784 chr1 248956422 + 176157987 176158017 L1MEf 1413 + 651 681 101733 30 chain 37214 chr1 248956422 + 176160333 176160805 L1PA8A 6298 + 5243 5712 36604 226 2 1 19 4 2 221 chain 6668 chr1 248956422 + 176197435 176197572 MLT1B 390 + 252 390 78737 17 44 45 76 chain 2450 chr1 248956422 + 176198212 176198406 L1ME1 1623 + 433 629 103905 21 18 17 15 122 125 18 chain 7427 chr1 248956422 + 176221179 176221269 MER41B 635 + 511 600 76322 85 1 0 4 chain 19796 chr1 248956422 + 176230785 176231126 MSTA 426 + 0 389 56680 105 13 0 9 1 42 61 0 2 8 41 39 30 1 21 72 chain 13835 chr1 248956422 + 176341278 176341568 L1PB1 5432 + 5158 5424 63820 11 2 0 21 0 1 29 2 1 16 8 7 37 1 0 15 1 0 5 18 8 18 24 19 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 3914 chr1 248956422 + 176350597 176350655 Charlie1b 519 + 193 252 92025 42 2 0 5 0 3 9 chain 459112 chr1 248956422 + 176356443 176361962 L1PA6 6164 + 577 6141 4152 984 5 7 284 20 20 245 0 3 205 6 0 100 0 1 754 1 5 4 0 1 44 4 8 64 1 0 10 3 4 220 21 25 44 1 0 93 0 1 529 0 6 124 1 5 242 0 1 323 0 1 505 0 12 610 0 8 72 chain 72182 chr1 248956422 + 176451338 176452379 MER11A 1151 + 0 1151 23488 55 0 99 138 20 15 19 0 2 60 0 1 144 0 1 4 0 1 21 2 1 12 0 1 110 5 6 149 21 63 7 35 0 178 9 8 16 7 11 29 chain 3248 chr1 248956422 + 176505625 176505660 L1P4 1494 + 772 807 97495 35 chain 18363 chr1 248956422 + 176597477 176597694 L1PA7 6471 + 6253 6468 58285 206 2 0 9 chain 4052 chr1 248956422 + 176598674 176598723 MER52C 1267 + 1101 1155 91072 41 0 5 8 chain 84005 chr1 248956422 + 176633640 176634594 L1PA5 6144 + 5177 6138 20805 98 0 4 530 1 3 33 0 1 292 chain 40857 chr1 248956422 + 176671628 176672071 L1PA3long 6157 + 5714 6157 34056 443 chain 15482 chr1 248956422 + 176729466 176729647 L1P1 4361 + 2920 3101 61679 181 chain 2765 chr1 248956422 + 176734724 176734758 MADE2 80 + 0 34 101857 34 chain 83803 chr1 248956422 + 176750922 176752355 L1HS 6032 + 4602 6032 20847 338 3 0 1092 chain 37066 chr1 248956422 + 176789145 176789562 L1PA4 6152 + 5736 6151 36699 55 2 0 360 chain 9160 chr1 248956422 + 176792623 176792720 L1PA2 6032 + 5931 6028 72209 97 chain 35764 chr1 248956422 + 176942522 176943033 MER4A1 472 + 0 467 37556 15 0 2 253 1 0 15 60 16 66 1 0 100 chain 8753 chr1 248956422 + 177094568 177094673 MLT1A0 366 + 261 366 73098 105 chain 71294 chr1 248956422 + 177202690 177203489 L1PA4 6152 + 5354 6152 23697 544 1 0 254 chain 57989 chr1 248956422 + 177319378 177320088 LTR12 884 + 0 880 26970 25 1 0 30 0 173 153 2 0 499 chain 63754 chr1 248956422 + 177325452 177326257 LTR12 884 + 0 884 25465 25 1 0 30 0 41 126 1 3 74 0 6 14 0 25 33 2 0 367 4 12 128 chain 18324 chr1 248956422 + 177370295 177370582 L1PA14 3548 + 3118 3398 58330 13 2 0 6 1 0 4 1 0 80 1 0 32 0 6 71 1 0 12 5 1 36 4 2 12 1 0 5 chain 29740 chr1 248956422 + 177377753 177378138 MLT2A1 477 + 2 385 42321 58 1 0 109 4 1 8 1 2 24 0 1 180 chain 50261 chr1 248956422 + 177409321 177409962 L1PA8 5853 + 5227 5853 29464 337 1 0 45 2 0 22 3 0 47 2 1 9 6 0 52 2 1 19 1 0 93 chain 62072 chr1 248956422 + 177510315 177511091 L1PA8 5853 + 5080 5853 25855 6 0 2 291 0 2 183 1 0 44 2 0 71 1 0 9 2 1 51 2 1 21 1 0 91 chain 5049 chr1 248956422 + 177552875 177552954 MADE1 96 + 0 96 85420 46 0 16 10 3 4 20 chain 179140 chr1 248956422 + 177564151 177566204 L1P1 4361 + 550 2595 10625 24 1 0 118 7 0 1115 1 2 505 1 0 281 chain 5148 chr1 248956422 + 177626953 177627182 L1MB4 1306 + 636 859 84912 32 144 139 5 1 0 47 chain 552514 chr1 248956422 + 177633927 177639946 L1PA2 6032 + 10 6027 578 247 1 0 5433 0 1 189 3 1 146 chain 35451 chr1 248956422 + 177654770 177655236 MER41C 542 + 50 542 37752 261 0 21 50 5 6 9 0 4 141 chain 530879 chr1 248956422 + 177692535 177698661 L1PA5 6144 + 0 6135 1792 393 0 4 43 0 6 165 2 1 112 1 2 1142 1 2 437 1 2 849 1 0 18 1 0 256 0 1 1861 2 1 572 1 0 268 chain 269498 chr1 248956422 + 177714289 177717560 L1PA8 5853 + 2573 5853 7722 49 0 4 255 2 1 900 0 2 270 4 12 514 0 1 18 0 1 409 0 2 82 2 0 471 1 0 43 7 5 73 11 10 45 2 1 19 1 0 93 chain 5646 chr1 248956422 + 177717710 177717781 MER53 195 - 89 160 82577 71 chain 156702 chr1 248956422 + 177722894 177725417 L1PA13 3608 + 122 3541 11958 14 4 2 16 11 11 12 55 41 25 20 24 21 9 7 82 4 0 37 1 0 14 1 0 11 8 6 17 6 2 17 1 0 19 3 1 13 2 0 20 1 0 97 2 0 468 16 21 66 1 16 43 0 2 96 0 13 20 0 10 47 3 0 141 5 902 33 7 8 37 3 4 6 0 6 127 10 11 419 1 0 24 33 32 45 0 7 18 0 2 19 3 1 15 1 3 42 1 0 49 15 12 45 2 0 7 2 0 20 1 0 24 22 14 12 14 7 10 1 0 6 chain 26420 chr1 248956422 + 177727748 177728063 L1PA8 5853 + 5245 5564 47093 96 0 4 219 chain 21213 chr1 248956422 + 177728064 177728358 L1PA8 5853 + 5564 5847 54866 46 2 0 69 1 0 7 1 0 9 2 0 44 3 2 19 1 0 17 0 1 22 5 1 46 chain 523827 chr1 248956422 + 177759409 177765293 L1PA3long 6157 + 4 5908 2099 570 0 1 272 0 12 331 1 4 752 0 2 76 3 13 9 10 0 1168 0 1 1697 0 1 995 chain 101783 chr1 248956422 + 177805911 177807060 L1PA5 6144 + 3817 4971 18087 804 5 10 340 chain 103147 chr1 248956422 + 177807061 177808224 L1PA5 6144 + 4971 6132 17937 766 2 0 395 chain 58828 chr1 248956422 + 177812388 177813138 LTR17 781 + 0 781 26730 328 1 0 322 0 9 37 1 45 13 22 0 19 0 1 7 chain 109559 chr1 248956422 + 177843248 177844485 L1PA4 6152 + 3839 5077 17116 98 0 1 1139 chain 21981 chr1 248956422 + 177860979 177861242 L1PA7 6471 + 6204 6466 53863 98 1 0 164 chain 19953 chr1 248956422 + 177876730 177877085 THE1B 368 + 0 357 56457 106 9 11 17 4 1 42 39 70 8 28 0 102 chain 3073 chr1 248956422 + 177894089 177894329 L1MD3 1191 + 850 1085 99050 27 112 115 10 2 0 17 55 49 17 chain 25754 chr1 248956422 + 177910063 177910430 THE1B 368 + 0 368 48086 172 3 2 18 4 0 96 4 2 15 6 14 49 chain 32900 chr1 248956422 + 177917589 177917943 L1PA3long 6157 + 5803 6157 39588 354 chain 529257 chr1 248956422 + 177986030 177992190 L1PA6 6164 + 0 6162 1869 509 0 1 57 1 0 141 5 0 1625 0 1 639 0 3 194 1 0 20 0 1 696 6 8 1938 0 1 141 1 2 5 1 0 180 chain 27918 chr1 248956422 + 178024288 178024654 THE1C 375 + 0 375 45003 180 5 15 155 1 0 25 chain 3244 chr1 248956422 + 178036132 178036199 MER5A 189 + 78 147 97533 34 19 21 14 chain 32817 chr1 248956422 + 178040240 178040664 LTR7B 505 + 0 496 39654 108 0 10 68 4 66 26 0 2 82 1 0 79 14 13 42 chain 15663 chr1 248956422 + 178043827 178044005 HERVH-int 3825 + 3647 3825 61450 178 chain 33103 chr1 248956422 + 178045465 178045921 LTR7B 505 + 0 496 39433 105 0 10 60 0 38 12 0 25 6 1 0 24 30 0 82 1 0 79 14 13 42 chain 91630 chr1 248956422 + 178090821 178092017 L1PA8 5853 + 4695 5853 19387 232 1 2 81 2 0 299 0 1 141 0 1 110 1 0 26 0 3 15 8 6 53 15 14 13 1 0 7 1 2 39 2 1 19 1 0 28 36 0 65 chain 30130 chr1 248956422 + 178112570 178112924 L1PA2 6032 + 5687 6027 41910 192 7 0 141 7 0 7 chain 24376 chr1 248956422 + 178130791 178131083 AluYk4 311 + 19 300 50205 232 2 1 28 10 0 20 chain 328665 chr1 248956422 + 178200167 178204344 HERVL-int 5654 + 1 5654 6238 311 47 52 114 0 3 268 0 7 52 4 16 18 0 1 109 0 1 145 0 1 25 1 0 200 1 12 43 9 6 250 0 1 88 0 2 11 0 4 78 6 11 15 4 5 12 0 1 211 1 1369 1320 0 4 245 2 3 210 1 0 136 0 3 58 1 47 133 0 4 48 chain 78702 chr1 248956422 + 178207898 178208956 MER11A 1151 + 0 1144 21939 23 4 8 27 4 103 67 1 0 64 5 1 31 0 2 114 5 6 92 0 1 296 25 8 77 0 1 46 1 0 16 0 1 160 chain 44188 chr1 248956422 + 178269386 178269931 MER41A 554 + 0 554 32018 290 0 9 227 1 0 15 0 1 12 chain 20149 chr1 248956422 + 178287482 178287971 L1PB1 5432 + 4963 5422 56190 32 23 14 5 0 2 82 12 11 6 3 0 23 1 0 8 1 0 10 20 14 17 0 2 20 1 12 15 1 0 43 3 1 16 2 0 6 16 6 15 40 35 12 1 0 22 1 0 12 1 0 14 1 0 4 chain 18862 chr1 248956422 + 178306810 178307027 L1PA2 6032 + 5811 6032 57696 7 0 4 210 chain 70538 chr1 248956422 + 178410326 178411505 L1PB1 5432 + 4270 5390 23857 235 13 15 30 1 0 9 4 6 51 0 3 10 7 1 73 4 5 58 1 0 37 21 22 166 0 3 20 4 8 81 45 11 16 9 4 10 1 0 13 4 0 11 3 1 50 1 0 17 1 0 43 2 1 21 19 7 18 3 1 5 1 0 14 2 0 24 1 0 20 chain 2217 chr1 248956422 + 178463696 178463756 MADE1 96 - 1 90 105221 22 20 49 18 chain 27463 chr1 248956422 + 178499299 178500076 MLT2A2 560 + 0 560 45621 108 1 0 15 1 0 57 1 0 16 34 36 61 6 0 8 11 126 72 326 0 6 0 1 54 chain 4829 chr1 248956422 + 178579311 178579370 MER20 218 + 112 172 86546 11 0 1 48 chain 87971 chr1 248956422 + 178592057 178593107 L1PA6 6164 + 5104 6162 20053 208 0 4 74 9 8 420 8 12 186 1 2 144 chain 24357 chr1 248956422 + 178666957 178667301 THE1A 353 + 0 342 50240 35 5 6 68 2 1 91 1 0 109 4 3 29 chain 35867 chr1 248956422 + 178678355 178678821 Tigger4 2445 + 367 839 37493 147 0 1 14 0 5 204 5 2 7 0 3 89 chain 156929 chr1 248956422 + 178777159 178778848 L1PA2 6032 + 4134 5823 11943 1689 chain 9559 chr1 248956422 + 178801678 178801811 Tigger2 2703 + 1872 2006 71352 38 15 16 80 chain 495501 chr1 248956422 + 178837557 178843666 L1PA2 6032 + 10 6032 3283 144 7 12 66 25 24 34 55 54 210 16 21 132 5 12 49 138 10 46 0 4 147 6 12 332 0 2 701 0 2 176 0 4 27 0 2 33 0 4 678 0 4 105 1 0 30 7 5 12 0 4 17 8 0 11 5 10 2886 chain 44211 chr1 248956422 + 178930200 178930757 MER41A 554 + 0 554 32004 54 0 6 13 4 1 255 7 0 101 0 1 123 chain 4091 chr1 248956422 + 178965015 178965065 MLT1H1 527 + 391 441 90845 50 chain 62192 chr1 248956422 + 178975539 178976322 LTR12 884 + 2 860 25818 23 1 0 113 22 6 19 0 2 124 0 88 146 5 7 330 chain 166016 chr1 248956422 + 179134710 179136703 SVA_D 2077 + 11 2056 11332 25 0 2 15 0 2 508 1 0 162 0 3 20 16 13 147 2 0 8 3 1 17 0 138 181 53 0 7 1 0 80 1 0 44 29 4 13 4 0 37 1 0 618 chain 4488 chr1 248956422 + 179135815 179135868 SVA_D 2077 + 1026 1126 38037 9 0 47 44 chain 2456 chr1 248956422 + 179136001 179136030 SVA_D 2077 + 1257 1286 38037 29 chain 73559 chr1 248956422 + 179138656 179139523 LTR12C 1709 + 0 1709 23203 161 1 0 108 6 0 159 8 857 424 chain 14830 chr1 248956422 + 179174336 179174512 AluSp 311 + 10 184 62477 118 2 0 56 chain 11125 chr1 248956422 + 179225545 179225732 MER20 218 + 8 195 68366 27 10 12 20 24 22 106 chain 12844 chr1 248956422 + 179231303 179231568 Tigger4b 360 + 16 329 65370 18 73 105 24 0 1 40 1 0 86 1 17 22 chain 23059 chr1 248956422 + 179302291 179302649 THE1D 372 + 0 371 52281 5 3 0 157 22 34 14 13 14 116 1 4 27 chain 151447 chr1 248956422 + 179373197 179374985 L1PA6 6164 + 4374 6160 12257 817 6 5 122 0 4 682 14 14 53 3 0 83 2 0 6 chain 99821 chr1 248956422 + 179399184 179400564 L1PB1 5432 + 4073 5424 18316 295 1 2 10 0 1 246 2 0 183 2 6 284 3 0 17 3 0 21 1 0 9 1 0 9 6 2 9 2 0 52 1 0 18 1 0 43 0 4 12 1 0 4 2 0 13 33 21 12 3 1 23 1 0 21 1 0 8 6 5 16 1 0 4 chain 203188 chr1 248956422 + 179434202 179436858 L1PA8 5853 + 3193 5853 9600 144 0 1 56 1 0 382 0 9 7 5 7 599 0 1 35 0 1 77 7 3 81 8 10 107 9 14 279 7 3 75 1 0 3 2 0 60 0 1 176 0 2 120 0 1 117 1 0 44 2 0 60 4 3 10 1 0 9 1 0 5 2 1 44 3 2 18 5 4 89 chain 59480 chr1 248956422 + 179451911 179454118 THE1B-int 1605 + 0 1599 26515 306 2 3 123 0 25 65 1424 784 231 1 0 34 0 7 21 chain 30214 chr1 248956422 + 179452407 179452724 AluYb8 318 + 1 318 41839 317 chain 22722 chr1 248956422 + 179454124 179454468 THE1B 368 + 0 368 52800 44 0 15 110 1 0 25 52 62 112 chain 8333 chr1 248956422 + 179609524 179609628 MLT1A 405 + 297 404 74075 40 0 3 64 chain 36266 chr1 248956422 + 179625813 179626223 L1PA3long 6157 + 5746 6157 37231 260 1 2 149 chain 205535 chr1 248956422 + 179646345 179648604 L1PA3long 6157 + 3885 6157 9518 61 0 1 407 0 4 801 0 5 844 0 3 146 chain 531808 chr1 248956422 + 179694057 179700429 L1PA7 6471 + 0 6470 1761 196 6 8 181 0 4 22 0 1 762 0 10 550 0 4 18 0 4 153 1 0 122 1 7 390 0 1 199 1 0 69 0 3 182 1 5 205 0 4 375 3 0 74 0 1 13 4 16 21 3 7 288 0 1 101 5 6 246 0 1 23 19 10 236 0 2 123 0 2 22 1 13 132 0 4 124 0 1 253 0 4 270 0 5 58 0 1 84 1 8 174 0 4 78 0 1 264 0 1 305 1 6 12 chain 7553 chr1 248956422 + 179705637 179705741 MER65C 458 + 300 411 75986 14 1 0 50 0 8 39 chain 11157 chr1 248956422 + 179739462 179739654 MER30 238 + 38 237 68332 62 12 28 24 0 6 16 13 1 15 3 0 47 chain 5055 chr1 248956422 + 179751731 179751792 L1MB1 2102 + 144 206 85383 4 0 1 57 chain 20056 chr1 248956422 + 179840650 179840887 L1PA7 6471 + 6216 6452 56301 195 1 0 41 chain 8255 chr1 248956422 + 179926011 179926131 Tigger3c 601 + 381 503 74275 69 9 11 42 chain 73029 chr1 248956422 + 179942944 179943735 L1PA2 6032 + 5240 6031 23309 791 chain 21625 chr1 248956422 + 180025615 180025914 L1PA8 5853 + 5554 5853 54322 7 0 6 42 3 1 72 1 0 11 4 3 44 2 1 19 1 0 93 chain 3188 chr1 248956422 + 180048751 180048787 MLT1-int 490 + 101 137 98013 36 chain 20924 chr1 248956422 + 180209163 180209520 THE1C 375 + 0 375 55228 13 2 0 34 0 6 6 26 27 93 0 3 18 32 42 44 0 1 6 1 0 82 chain 324663 chr1 248956422 + 180302603 180306259 L1PA4 6152 + 2485 6152 6321 1863 0 4 174 0 1 408 0 4 163 1 0 192 1 0 458 0 3 62 0 1 334 chain 28007 chr1 248956422 + 180306827 180307217 L1MA2 4263 + 3732 4110 44854 70 3 0 71 0 1 82 11 9 93 7 0 46 1 0 6 chain 533905 chr1 248956422 + 180333571 180339692 L1PA5 6144 + 35 6144 1662 48 0 1 145 13 12 707 0 4 2255 0 7 308 1 3 74 0 1 749 0 4 147 39 9 149 1 0 82 0 4 402 2 0 547 4 4 302 1 0 145 chain 32509 chr1 248956422 + 180408310 180408678 L1PA3long 6157 + 5788 6157 39937 226 3 4 139 chain 18813 chr1 248956422 + 180449670 180449904 L1PA6 6164 + 5912 6147 57764 102 3 4 129 chain 274163 chr1 248956422 + 180451977 180455529 L1PA7 6471 + 3182 6466 7600 213 316 0 154 0 4 42 0 1 239 0 1 25 3 0 383 0 20 457 0 6 134 7 24 737 0 5 504 1 0 328 2 0 7 chain 22380 chr1 248956422 + 180505251 180506096 MER50 708 + 0 686 53303 49 17 11 45 0 1 44 12 16 81 466 307 72 27 28 32 chain 13904 chr1 248956422 + 180509088 180509639 LTR12C 1709 + 776 1434 63731 42 1 41 67 50 8 62 291 400 38 chain 26067 chr1 248956422 + 180558768 180559133 THE1A 353 + 0 353 47631 105 6 5 123 14 5 50 4 0 5 0 2 58 chain 39515 chr1 248956422 + 180559133 180559625 THE1A-int 1579 + 0 497 35004 163 6 8 88 0 4 34 1 0 200 chain 30501 chr1 248956422 + 180587858 180588379 LTR10E 629 + 0 585 41568 18 1 0 14 0 12 116 15 14 116 0 49 31 11 20 36 63 62 46 1 0 34 2 0 17 chain 28713 chr1 248956422 + 180680661 180681140 L1MA5A 2387 + 1852 2288 43769 12 8 2 97 5 7 63 3 0 26 1 2 46 1 0 50 2 0 29 1 0 27 8 5 12 30 0 58 chain 36977 chr1 248956422 + 180726008 180726509 LTR12 884 + 0 750 36752 25 1 0 56 0 132 106 0 25 36 2 0 76 0 1 91 0 103 85 9 0 14 chain 13378 chr1 248956422 + 180757821 180758056 Tigger4 2445 + 239 448 64499 54 29 9 48 18 12 86 chain 7950 chr1 248956422 + 180758721 180758811 U6 107 + 0 101 75000 58 0 11 32 chain 282409 chr1 248956422 + 180758817 180761957 L1PA4 6152 + 2688 5827 7363 496 0 1 28 0 1 480 0 1 131 0 1 782 1 0 451 4 0 767 chain 2947 chr1 248956422 + 180796752 180796783 U2 167 + 0 31 100410 31 chain 33347 chr1 248956422 + 180833171 180833611 L1P2 5180 + 1987 2419 39220 74 4 3 263 12 1 64 0 4 23 chain 19292 chr1 248956422 + 180904077 180904424 THE1C 375 + 0 371 57249 47 0 6 17 14 16 18 20 40 10 20 0 22 13 30 144 1 0 21 chain 117870 chr1 248956422 + 181045651 181047071 LTR12C 1709 + 0 1709 15906 272 7 11 17 0 1 83 1 0 47 2 1 77 4 5 18 0 1 8 0 1 108 0 278 92 0 2 90 1 0 112 0 4 481 chain 54598 chr1 248956422 + 181064972 181066287 MER4E1 777 + 0 777 28011 24 0 1 160 582 0 57 2 1 4 0 1 81 0 19 39 0 5 41 0 1 108 1 9 137 0 14 15 5 1 59 chain 2745 chr1 248956422 + 181151387 181151428 MIRb 242 + 68 107 102000 6 2 0 33 chain 7428 chr1 248956422 + 181154744 181154835 MLT2B4 540 + 0 91 76321 91 chain 4123 chr1 248956422 + 181176517 181176582 MLT1C 463 + 27 91 90631 28 7 6 30 chain 24932 chr1 248956422 + 181193655 181194021 THE1B 368 + 0 366 49378 15 2 0 25 0 5 45 19 20 61 4 3 117 3 0 75 chain 121785 chr1 248956422 + 181194023 181195578 THE1B-int 1605 + 0 1592 15214 78 0 1 147 0 1 205 4 19 557 0 1 4 1 0 5 6 8 210 10 23 263 0 5 65 chain 48574 chr1 248956422 + 181196913 181197440 L1PA3long 6157 + 5630 6157 30092 527 chain 364177 chr1 248956422 + 181197443 181201740 L1PA6 6164 + 1854 6162 5747 35 0 9 388 6 5 41 14 0 250 0 4 397 0 1 205 0 1 175 0 4 57 7 0 272 2 0 468 1 0 198 0 8 94 0 1 417 2 1 433 0 4 166 0 2 342 0 3 327 chain 76106 chr1 248956422 + 181226122 181226946 L1PA2 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2 36 19 12 19 4 3 90 1 0 151 chain 132320 chr1 248956422 + 181528422 181529998 THE1A-int 1579 + 0 1579 13793 20 5 7 802 0 1 749 chain 25283 chr1 248956422 + 181529998 181530353 THE1A 353 + 0 353 48810 102 22 21 47 0 1 31 1 0 17 1 0 134 chain 22792 chr1 248956422 + 181542399 181542771 THE1C 375 + 0 375 52682 14 2 0 33 38 39 99 4 5 36 9 11 9 0 1 128 chain 6011 chr1 248956422 + 181571962 181572092 MER53 195 + 38 194 81038 15 7 0 20 27 53 8 0 7 53 chain 21472 chr1 248956422 + 181653208 181653557 THE1B 368 + 0 368 54551 136 23 31 5 0 1 25 35 45 125 chain 50401 chr1 248956422 + 181817324 181817991 PABL_A 660 + 0 660 29413 167 26 17 254 0 1 76 1 0 61 0 2 82 chain 15940 chr1 248956422 + 181820885 181821219 L1PB1 5432 + 5120 5422 61103 18 1 0 9 2 1 10 15 9 53 2 1 16 1 0 42 2 1 16 1 0 5 45 30 15 2 0 24 1 0 21 1 0 13 1 0 18 chain 4038 chr1 248956422 + 181829662 181829758 HERV9-int 5642 + 5550 5622 91167 33 2 1 14 28 5 19 chain 20224 chr1 248956422 + 181832880 181833710 LTR12C 1709 + 772 1557 56111 31 17 53 212 529 449 24 1 0 16 chain 3166 chr1 248956422 + 181833140 181833181 LTR12C 1709 + 1027 1068 73356 41 chain 468336 chr1 248956422 + 181848920 181855175 L1PA8A 6298 + 32 6289 3896 8 1 0 18 32 21 21 3 0 19 1 0 4 2 0 5 7 1 19 1 0 9 2 1 12 1 0 4 0 16 8 10 0 6 7 4 13 53 44 48 1 0 6 17 11 60 19 17 14 22 19 229 1 10 218 0 1 55 0 3 146 17 21 7 6 0 10 3 1 76 5 0 405 2 0 56 0 1 154 9 10 475 0 5 47 4 6 89 0 1 33 0 1 10 8 1 58 0 1 182 0 9 31 0 1 346 8 10 150 1 4 69 1 0 35 0 3 36 1 4 30 0 1 397 0 1 82 0 2 623 0 2 56 0 3 210 6 5 116 1 5 510 0 6 10 0 1 53 0 1 725 chain 29444 chr1 248956422 + 181860018 181860329 AluYa5 310 + 0 310 42680 132 1 0 178 chain 6066 chr1 248956422 + 181862662 181862842 L1MB3 1562 + 1231 1421 80848 49 1 0 7 85 96 38 chain 394106 chr1 248956422 + 181872997 181878415 L1PB1 5432 + 33 5419 5246 153 7 2 112 6 9 92 2 0 5 5 4 36 0 1 31 6 10 304 0 3 182 0 1 43 1 2 241 23 29 110 2 0 5 14 0 193 1 6 73 0 1 265 4 5 34 27 0 6 0 27 481 0 1 38 11 9 168 0 3 124 1 0 66 0 1 302 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145 1 0 89 2 4 56 10 4 49 0 13 88 0 1 271 0 4 47 7 10 178 1 3 21 chain 134422 chr1 248956422 + 181943463 181945808 L1PA13 3608 + 1518 3548 13605 157 0 1 37 312 0 60 5 7 86 9 10 27 4 3 428 0 1 233 3 4 41 2 0 27 5 4 241 23 39 49 5 4 41 0 2 33 0 1 4 8 9 37 7 8 48 1 0 12 24 25 26 0 4 46 2 0 62 1 0 55 1 0 4 6 4 46 10 6 18 2 1 18 0 3 7 18 7 11 17 10 10 4 1 12 chain 56063 chr1 248956422 + 181954864 181955486 SVA_B 1603 + 920 1603 27545 38 8 69 576 chain 14477 chr1 248956422 + 181977037 181977201 L1PA4 6152 + 5988 6151 62923 8 1 0 155 chain 279022 chr1 248956422 + 181977220 181981449 L1PA8 5853 + 1886 5806 7452 109 0 1 22 8 0 17 0 52 187 7 11 51 2 40 95 10 14 5 0 2 44 1 11 157 2 1 70 1 0 4 365 3 93 1 0 55 7 11 645 0 1 151 0 4 35 5 4 31 0 1 92 1 3 7 0 1 186 5 10 225 1 0 31 6 8 44 4 10 29 0 5 543 20 21 66 1 0 289 105 7 88 18 8 78 1 0 44 2 0 71 1 0 8 43 79 40 chain 26193 chr1 248956422 + 181978013 181978340 L1PA7 6471 + 6126 6452 47435 184 1 0 142 chain 172742 chr1 248956422 + 182007844 182010181 L1PB1 5432 + 1939 4283 10965 158 4 10 67 0 1 319 6 0 160 0 5 169 27 14 26 6 0 62 0 4 302 2 1 128 0 5 32 1 6 283 9 10 28 10 15 217 4 6 239 2 1 76 chain 135753 chr1 248956422 + 182010181 182011758 SVA_B 1603 + 8 1603 13460 13 15 0 19 18 1 737 1 0 74 1 0 13 1 0 14 4 0 42 4 0 40 0 24 5 0 37 576 chain 67666 chr1 248956422 + 182154085 182154887 L1PA7 6471 + 5606 6466 24528 8 0 3 92 0 1 426 0 1 178 0 1 40 0 47 49 0 5 9 chain 525298 chr1 248956422 + 182218465 182225364 L1PA7 6471 + 2 6464 2033 410 25 6 26 4 8 293 0 2 28 0 1 5 2 1 229 0 2 278 8 9 22 18 20 288 0 1 403 0 1 125 452 3 87 0 1 304 0 1 4 1 0 66 8 9 315 0 1 147 1 5 130 0 4 598 0 1 271 1 0 518 1 0 48 0 4 308 1 0 116 11 5 177 2 1 47 10 11 272 0 3 54 0 3 28 0 1 61 4 5 42 0 1 477 0 1 5 20 21 148 chain 40440 chr1 248956422 + 182220629 182221079 L1PA3long 6157 + 5706 6157 34354 300 1 2 149 chain 4582 chr1 248956422 + 182266585 182266646 MLT1A0 366 + 0 64 87895 22 0 2 23 0 1 16 chain 5442 chr1 248956422 + 182343827 182343923 MLT1C 463 + 73 162 83494 51 12 6 10 1 0 22 chain 5459 chr1 248956422 + 182353222 182353285 MER20 218 + 97 160 83408 63 chain 29809 chr1 248956422 + 182465265 182465613 L1PA5 6144 + 5785 6135 42223 40 1 2 173 4 5 130 chain 159677 chr1 248956422 + 182466949 182468772 L1PA4 6152 + 4322 6151 11770 313 1 0 398 1 2 494 0 1 466 3 8 147 chain 4565 chr1 248956422 + 182485817 182485906 MER58B 340 + 101 193 87995 19 24 27 46 chain 19614 chr1 248956422 + 182488542 182488748 AluYa5 310 + 98 304 56895 206 chain 43310 chr1 248956422 + 182571225 182571738 MER9a3 513 + 0 513 32557 256 1 0 96 5 6 155 chain 20055 chr1 248956422 + 182578754 182579039 L1PB4 2604 + 2253 2548 56306 8 0 1 112 11 23 13 3 0 138 chain 38711 chr1 248956422 + 182691414 182691983 L1PA15 4387 + 2289 2845 35554 21 1 0 176 23 1 224 36 44 18 0 2 70 chain 3579 chr1 248956422 + 182724247 182724287 MLT2A2 560 + 520 560 94597 40 chain 58833 chr1 248956422 + 182891551 182892629 L1MA3 4352 + 1917 2830 26726 63 18 20 29 174 0 14 6 1 30 0 1 65 3 11 33 0 1 27 0 2 99 1 0 34 1 0 22 4 8 20 3 4 27 9 11 65 26 21 58 1 0 20 0 1 226 chain 85368 chr1 248956422 + 182894021 182895216 L1PB1 5432 + 3453 4689 20553 14 0 1 15 10 18 30 3 7 29 10 0 30 0 1 4 1 0 124 1 6 261 8 9 54 1 2 55 2 1 27 0 5 308 0 4 134 2 17 19 0 8 53 chain 28646 chr1 248956422 + 182954233 182954536 AluYk11 308 + 0 303 43874 303 chain 55884 chr1 248956422 + 183066308 183066975 L1PA7 6471 + 5813 6468 27594 562 8 0 18 0 1 7 4 1 57 2 0 9 chain 37587 chr1 248956422 + 183072605 183073089 MER1A 529 + 0 529 36343 389 1 0 54 11 57 29 chain 27689 chr1 248956422 + 183151182 183151497 L1PA5 6144 + 5818 6137 45332 89 0 4 226 chain 16068 chr1 248956422 + 183174728 183174989 L1MA2 4263 + 3854 4105 60937 62 6 5 35 11 9 93 16 9 38 chain 4182 chr1 248956422 + 183263439 183263487 MER5B 177 - 3 51 90248 48 chain 9890 chr1 248956422 + 183280688 183281170 MER30 238 + 74 238 70637 35 6 13 30 325 3 39 3 0 44 chain 23900 chr1 248956422 + 183311796 183312124 THE1B 368 + 0 341 50943 44 0 15 106 8 7 77 7 6 86 chain 19371 chr1 248956422 + 183315537 183315795 AluSg7 307 + 36 297 57160 95 0 1 127 8 9 11 0 1 17 chain 9292 chr1 248956422 + 183315803 183315921 L1PA7 6471 + 6348 6470 71925 107 0 4 11 chain 50203 chr1 248956422 + 183396240 183396893 MER50 708 + 24 686 29483 27 6 7 45 0 1 279 1 0 33 0 6 5 1 2 55 1 0 101 0 2 99 chain 421692 chr1 248956422 + 183397301 183402079 L1PA5 6144 + 1367 6143 4861 271 0 2 12 0 1 1855 0 1 165 2 1 2295 7 2 171 chain 71390 chr1 248956422 + 183427086 183427988 SVA_A 1864 + 505 1857 23676 14 1 80 17 2 0 111 2 0 105 10 155 70 40 270 530 chain 5882 chr1 248956422 + 183450976 183451068 Charlie1a 1436 + 1317 1413 81548 26 8 12 58 chain 29308 chr1 248956422 + 183613209 183613629 LTR7 482 + 0 470 42876 138 21 28 45 11 53 41 0 1 164 chain 300198 chr1 248956422 + 183613648 183617684 HERVH-int 3825 + 5 3825 6823 457 488 0 70 5 0 38 3 2 8 1 0 24 1 52 43 1 0 80 1 0 68 2 0 19 0 1 362 16 1 211 0 1 239 8 35 1370 0 3 31 8 218 254 3 8 225 chain 3333 chr1 248956422 + 183614553 183614593 HERVH-int 3825 + 483 523 89834 40 chain 29553 chr1 248956422 + 183618942 183619373 LTR7Y 441 + 1 441 42544 102 9 0 57 66 84 197 chain 561440 chr1 248956422 + 183658069 183664223 L1PA3long 6157 + 0 6157 146 809 0 4 1933 0 1 865 0 1 67 3 0 2477 chain 17679 chr1 248956422 + 183708343 183708609 HERVH48-int 3304 + 924 1174 59030 44 0 2 41 3 0 11 1 0 20 1 0 15 2 0 31 3 0 3 2 0 21 2 0 5 1 0 16 1 0 16 6 4 21 chain 63830 chr1 248956422 + 183762612 183763399 L1PA7 6471 + 5682 6466 25447 456 0 1 158 18 19 141 5 0 9 chain 10845 chr1 248956422 + 183765973 183766091 L1PA4 6152 + 6033 6151 68783 118 chain 6098 chr1 248956422 + 183774480 183774561 LOR1b 457 + 10 101 80736 21 4 14 56 chain 4823 chr1 248956422 + 183789826 183789906 MADE1 96 - 0 96 86588 33 9 25 38 chain 49093 chr1 248956422 + 183845955 183846550 L1PA7 6471 + 5872 6468 29908 441 0 1 7 5 0 102 1 10 25 4 0 10 chain 5290 chr1 248956422 + 183905783 183906028 MER58B 340 + 77 328 84246 19 149 151 51 9 13 17 chain 48403 chr1 248956422 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12 17 8 9 129 321 0 16 22 24 303 2 1 290 chain 41467 chr1 248956422 + 184221600 184222119 MLT2A2 560 + 2 560 33697 180 0 23 73 0 1 122 3 14 84 2 1 5 0 1 44 0 4 6 chain 25799 chr1 248956422 + 184252242 184252590 L1PA8 5853 + 5502 5853 48014 62 1 0 44 2 0 25 0 8 38 1 0 9 1 0 52 2 1 19 1 0 85 0 2 6 chain 14580 chr1 248956422 + 184272055 184272220 L1PA2 6032 + 5869 6032 62818 157 2 0 6 chain 8477 chr1 248956422 + 184320454 184320553 L1PA8A 6298 + 6191 6290 73733 99 chain 21870 chr1 248956422 + 184320934 184321194 AluY 311 + 22 283 54012 110 0 1 150 chain 11653 chr1 248956422 + 184353737 184353929 7SLRNA 320 + 20 213 67476 124 44 45 24 chain 112530 chr1 248956422 + 184430829 184432674 L1PA7 6471 + 4679 6468 16745 287 9 0 655 56 0 77 0 2 158 0 1 250 0 3 195 9 10 139 0 2 10 chain 3418 chr1 248956422 + 184523016 184523064 L1MC3 1789 + 1334 1385 95913 35 0 4 4 1 0 8 chain 28690 chr1 248956422 + 184571011 184571323 AluYa5 310 + 0 308 43816 123 1 0 3 3 0 182 chain 37410 chr1 248956422 + 184573152 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chain 18508 chr1 248956422 + 185932607 185932822 L1PA8A 6298 + 6068 6283 58091 215 chain 39567 chr1 248956422 + 186032040 186033050 L1PB2 3958 + 3196 3838 34982 27 2 3 81 2 0 55 1 0 9 3 0 54 0 4 9 2 0 7 35 29 54 347 0 17 42 35 38 1 0 63 4 3 69 2 0 21 2 1 63 chain 26573 chr1 248956422 + 186032386 186032728 THE1C 375 + 0 375 46872 106 0 33 46 1 0 74 0 2 88 1 0 26 chain 35703 chr1 248956422 + 186206413 186206878 MER75 514 + 33 503 37602 218 14 17 28 6 8 199 chain 135314 chr1 248956422 + 186216161 186217640 L1PA4 6152 + 3705 5187 13509 749 0 3 730 chain 45556 chr1 248956422 + 186222873 186223508 L1PBa 3878 + 2533 3158 31282 130 6 8 10 0 1 22 0 3 7 8 4 84 1 0 68 0 1 163 3 0 13 1 0 9 8 0 102 chain 41151 chr1 248956422 + 186227756 186228279 MER41A 554 + 0 554 33875 17 0 1 168 0 1 25 12 29 152 0 12 149 chain 42240 chr1 248956422 + 186245249 186245808 MER51C 639 + 7 610 33223 27 3 8 152 0 1 16 1 0 39 0 1 49 8 42 73 0 4 191 chain 38098 chr1 248956422 + 186247531 186247983 LTR71A 459 + 7 459 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16634 chr1 248956422 + 189505308 189505586 THE1D 372 + 91 372 60234 75 24 27 35 12 0 7 10 22 115 chain 23819 chr1 248956422 + 189529092 189529381 AluSc 308 + 9 294 51071 66 4 0 219 chain 39002 chr1 248956422 + 189538423 189538942 MER41C 542 + 0 542 35357 49 0 1 147 0 1 5 1 0 103 13 34 109 0 1 92 chain 22435 chr1 248956422 + 189557782 189558119 THE1A 353 + 0 330 53226 106 23 17 77 13 12 118 chain 4032 chr1 248956422 + 189583473 189583522 LTR41 747 + 572 621 91224 49 chain 27147 chr1 248956422 + 189618491 189618878 L1PA8 5853 + 5473 5853 46049 91 0 2 5 6 3 34 2 0 73 1 0 6 2 1 52 2 1 19 1 0 93 chain 38340 chr1 248956422 + 189621535 189622098 L1PA8 5853 + 5294 5849 35822 221 3 0 22 0 1 11 1 0 13 1 0 31 16 15 74 6 11 15 1 0 4 6 1 22 7 6 22 1 0 86 chain 36701 chr1 248956422 + 189662201 189662672 LTR10F 562 + 0 562 36955 144 0 87 112 1 2 69 0 3 145 chain 57996 chr1 248956422 + 189721919 189722802 MER4E 760 + 0 760 26968 17 4 0 134 12 15 171 127 5 418 chain 552364 chr1 248956422 + 189754803 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249 1 0 46 2 0 69 1 0 9 1 0 52 2 1 19 1 0 88 chain 11042 chr1 248956422 + 192794260 192794404 LTR36 617 + 457 601 68495 33 0 1 24 0 1 20 2 0 65 chain 200742 chr1 248956422 + 192828177 192830542 L1PA7 6471 + 4074 6454 9698 24 0 1 172 0 11 68 0 4 726 1 0 349 9 0 7 0 9 176 1 0 674 3 4 155 chain 174089 chr1 248956422 + 192856341 192858398 SVA_D 2077 + 0 2076 10893 58 1 3 43 0 27 52 0 2 538 0 3 35 3 0 142 2 0 13 3 1 30 11 0 89 0 2 218 49 0 83 0 50 687 chain 4230 chr1 248956422 + 192857579 192857628 SVA_D 2077 + 1383 1481 37625 5 0 49 44 chain 36029 chr1 248956422 + 192881080 192881538 L1PA8 5853 + 5395 5847 37398 169 1 0 46 2 0 48 0 1 20 1 0 8 2 1 52 2 1 19 1 0 87 chain 18214 chr1 248956422 + 192883401 192883658 MER1B 344 + 88 344 58446 123 9 5 51 12 15 62 chain 32321 chr1 248956422 + 192910068 192910430 L1PA5 6144 + 5775 6144 40101 351 0 7 11 chain 53722 chr1 248956422 + 192911629 192912364 LTR12_ 688 + 0 665 28306 121 0 25 341 95 0 178 chain 9510 chr1 248956422 + 192921434 192921583 MER2 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73946 chr1 248956422 + 195819584 195820556 L1PA8 5853 + 4763 5744 23107 246 0 5 63 1 0 7 1 4 15 0 3 204 0 1 210 0 3 40 1 0 44 2 0 71 21 19 46 chain 46853 chr1 248956422 + 195859009 195859896 L1PB1 5432 + 4582 5414 30713 47 15 7 175 6 0 121 0 3 165 18 10 4 1 0 13 7 7 13 1 0 9 62 56 7 1 0 18 5 4 21 6 0 34 75 58 16 1 0 20 2 1 13 1 0 10 chain 202188 chr1 248956422 + 195999091 196001737 HERVL-int 5654 + 2988 5654 9633 40 0 1 163 9 0 20 1 12 225 1 0 193 0 35 388 3 2 55 0 1 125 24 11 12 1 2 4 1 0 214 16 14 36 0 1 730 0 3 156 4 0 174 10 8 41 chain 16873 chr1 248956422 + 196001755 196002026 MLT2A2 560 + 18 291 59943 150 56 58 65 chain 88672 chr1 248956422 + 196046800 196047793 L1PA3long 6157 + 5163 6157 19909 148 0 1 845 chain 41307 chr1 248956422 + 196081928 196082480 MER41A 554 + 0 554 33782 39 7 8 426 17 18 63 chain 79411 chr1 248956422 + 196093697 196094723 L1PA8 5853 + 4838 5853 21763 103 1 0 46 0 4 19 9 5 70 5 1 480 1 0 18 0 1 23 2 0 71 1 0 9 1 0 52 2 1 19 4 3 90 chain 21618 chr1 248956422 + 196105240 196105493 L1PA5 6144 + 5890 6144 54327 104 0 1 149 chain 303256 chr1 248956422 + 196106615 196111382 L1PA7 6471 + 2648 6432 6762 154 4 5 222 13 14 307 0 1 178 1 2 38 4 5 221 4 0 297 2 1 329 0 5 182 0 1 154 980 0 59 0 1 6 1 0 792 5 3 71 8 2 441 1 0 293 chain 81960 chr1 248956422 + 196157381 196158294 L1PA3long 6157 + 5237 6152 21251 157 0 2 756 chain 9966 chr1 248956422 + 196158989 196159148 MER57-int 2662 + 979 1124 70495 88 1 2 24 16 1 30 chain 120809 chr1 248956422 + 196162726 196164251 HERVL-int 5654 + 4063 5654 15375 292 0 1 71 0 60 68 2 10 96 0 1 172 12 5 285 0 1 299 0 1 4 10 11 214 chain 30017 chr1 248956422 + 196164251 196164703 MLT2A1 477 + 0 477 42035 169 4 1 9 0 1 24 5 6 116 8 9 47 27 52 43 chain 44558 chr1 248956422 + 196177354 196177853 L1PA3long 6157 + 5638 6137 31800 499 chain 7210 chr1 248956422 + 196256767 196256853 MER41B 635 + 0 86 76913 86 chain 23468 chr1 248956422 + 196369904 196370152 L1PA3long 6157 + 5331 5579 51638 248 chain 6529 chr1 248956422 + 196376754 196376834 LTR26 622 + 60 139 79234 22 1 0 57 chain 15619 chr1 248956422 + 196439842 196440055 L1PA8 5853 + 5644 5853 61507 35 2 1 10 1 0 49 3 2 19 1 0 93 chain 41951 chr1 248956422 + 196484789 196485320 L1PA8A 6298 + 5661 6204 33387 29 0 11 258 0 1 244 chain 7562 chr1 248956422 + 196497220 196497321 MER2 342 + 85 185 75954 26 1 0 74 chain 63652 chr1 248956422 + 196522576 196523392 LTR12 884 + 0 884 25491 24 1 0 185 1 66 65 1 2 35 2 0 74 3 4 116 8 12 301 chain 79598 chr1 248956422 + 196548274 196549156 L1PA3long 6157 + 5263 6149 21717 139 0 3 602 0 1 141 chain 8844 chr1 248956422 + 196592095 196592229 L1MA2 4263 + 3986 4114 72871 18 4 6 48 7 0 47 1 0 9 chain 19909 chr1 248956422 + 196612246 196612492 THE1A-int 1579 + 1333 1579 56514 12 9 8 21 0 1 204 chain 20922 chr1 248956422 + 196612492 196612865 THE1A 353 + 0 353 55231 15 2 0 32 0 1 32 46 45 98 8 0 7 23 12 33 0 1 77 chain 104993 chr1 248956422 + 196696980 196698165 L1PA4 6152 + 4965 6152 17688 611 9 10 232 0 1 333 chain 54461 chr1 248956422 + 196698165 196698877 L1P3 4156 + 3389 4107 28006 76 0 3 15 0 1 57 8 12 55 0 1 141 8 5 352 chain 3731 chr1 248956422 + 196701542 196701584 LTR26 622 + 530 572 93390 42 chain 113140 chr1 248956422 + 196795456 196797077 THE1B-int 1605 + 0 1605 16657 13 4 0 39 5 6 94 2 0 103 0 1 61 0 2 23 0 2 89 35 19 158 20 0 143 3 12 85 9 10 76 5 6 200 0 4 228 32 20 5 0 3 42 0 13 142 0 1 5 chain 11514 chr1 248956422 + 196809393 196809867 LTR12C 1709 + 728 1485 67724 109 1 0 13 0 4 23 306 586 22 chain 3216 chr1 248956422 + 196823787 196823847 L1MC1 2226 + 2135 2193 97744 13 5 4 33 1 0 8 chain 115246 chr1 248956422 + 196863941 196865425 L1PA8 5853 + 2261 3746 16351 464 0 1 32 0 1 128 0 1 29 0 2 262 0 1 4 1 0 132 13 18 165 17 4 21 1 2 10 0 2 46 0 1 159 chain 116021 chr1 248956422 + 196920343 196921970 THE1B-int 1605 + 0 1605 16233 13 4 0 304 0 2 114 35 19 182 29 9 110 3 12 85 9 10 76 5 6 432 32 20 5 0 3 42 0 13 142 0 1 5 chain 9364 chr1 248956422 + 196934179 196934383 LTR12C 1709 + 773 1183 71779 64 1 0 20 66 273 53 chain 2115 chr1 248956422 + 196934400 196934428 LTR12C 1709 + 1159 1187 105727 28 chain 308270 chr1 248956422 + 197044342 197048128 L1PA6 6164 + 2334 6147 6653 748 1 2 100 2 1 30 0 1 12 26 24 121 0 1 323 5 0 11 0 1 616 0 1 142 0 3 373 2 3 54 0 1 394 11 15 4 0 1 112 0 15 193 13 13 90 0 1 263 1 5 139 chain 23811 chr1 248956422 + 197053273 197053635 THE1B 368 + 0 368 51084 107 2 3 59 1 0 29 46 52 118 chain 321269 chr1 248956422 + 197071269 197076087 L1PB1 5432 + 980 5418 6379 43 1 5 269 1 0 4 0 1 92 26 11 482 0 4 34 15 6 156 8 11 39 5 6 78 10 14 77 1 0 189 13 10 54 7 1 87 0 5 44 339 0 35 0 1 98 15 19 149 6 4 127 0 6 20 6 2 47 0 1 512 1 0 7 6 0 95 0 4 162 1 0 44 3 0 179 0 1 90 3 0 222 0 15 78 5 1 117 0 1 45 0 3 18 0 2 207 21 16 43 6 0 21 0 1 8 1 2 8 4 1 24 1 0 7 2 1 12 18 12 50 2 1 16 2 1 43 1 0 13 68 52 24 10 9 12 1 0 13 5 4 10 chain 33670 chr1 248956422 + 197097007 197097481 LTR15 485 + 1 478 38956 73 5 6 27 0 1 7 0 2 7 4 0 26 0 2 22 0 2 96 7 11 115 2 0 39 1 0 5 2 0 36 chain 14942 chr1 248956422 + 197165798 197165976 L1P3 4156 + 0 178 62329 178 chain 16833 chr1 248956422 + 197165980 197166201 L1PA7 6471 + 6250 6470 59996 71 4 3 146 chain 5570 chr1 248956422 + 197187732 197187939 L1MC1 2226 + 1980 2119 82933 12 2 0 46 58 0 9 46 40 16 3 1 15 chain 275948 chr1 248956422 + 197291873 197295066 L1PA5 6144 + 2936 6144 7551 463 8 14 17 0 3 242 1 0 267 2 0 44 0 1 1396 5 3 80 0 8 47 0 2 621 chain 52529 chr1 248956422 + 197370023 197370711 L1PBa 3878 + 1399 2572 28718 122 1 0 101 4 0 9 12 490 231 1 3 29 0 10 178 chain 134490 chr1 248956422 + 197405041 197406579 SVA_D 2077 + 0 2066 13597 529 1 0 13 0 40 105 0 40 43 40 0 146 5 494 656 chain 3344 chr1 248956422 + 197405732 197405772 SVA_D 2077 + 810 850 82041 40 chain 261037 chr1 248956422 + 197489487 197493306 L1PB2 3958 + 66 3836 7940 18 10 5 15 9 4 18 0 1 11 2 0 14 4 0 23 27 21 32 8 5 49 20 15 62 0 5 214 1 0 135 2 1 31 4 3 73 8 3 34 5 7 158 0 3 222 9 1 130 5 3 52 30 35 178 0 3 36 0 4 316 2 1 316 0 2 111 0 1 30 15 10 8 0 10 20 15 14 67 0 1 35 4 6 77 0 1 152 0 1 52 0 3 133 0 1 251 17 15 37 1 0 9 29 1 4 1 0 63 2 0 13 2 0 82 27 26 58 1 0 64 1 0 53 7 10 9 2 0 22 3 2 59 chain 3676 chr1 248956422 + 197524051 197524094 L1MCc 1008 + 783 826 93764 43 chain 178410 chr1 248956422 + 197532240 197534143 L1HS 6032 + 3329 5232 10660 1903 chain 38895 chr1 248956422 + 197554988 197555701 L1PA17 2846 + 2015 2692 35434 63 0 9 8 50 43 39 25 21 50 0 1 4 27 1 100 0 1 4 8 7 151 5 0 16 1 0 36 32 31 32 1 0 18 1 0 42 chain 305221 chr1 248956422 + 197571946 197576087 L1PA6 6164 + 0 6159 6720 590 0 4 77 16 17 90 0 1 17 1 18 203 456 2429 134 0 1 396 0 4 129 0 7 939 0 3 173 0 1 4 1 0 83 0 5 41 0 3 610 0 1 174 2 0 5 chain 457668 chr1 248956422 + 197624580 197629687 L1PA3long 6157 + 1055 6157 4192 528 0 3 682 7 0 637 5 1 271 2 0 109 5 6 1070 0 4 1791 chain 86670 chr1 248956422 + 197649516 197651010 L1PB1 5432 + 4114 5424 20280 439 0 1 18 4 15 32 0 2 84 0 2 7 6 5 14 1 0 77 162 0 88 1 0 85 0 1 117 3 4 12 3 0 17 1 0 13 16 11 11 6 4 39 11 9 16 1 0 42 2 1 16 1 0 5 20 8 16 11 8 13 3 1 23 1 0 21 1 0 13 1 0 16 1 0 4 chain 307691 chr1 248956422 + 197697627 197701540 L1PA8A 6298 + 2378 6291 6669 11 0 4 107 0 2 462 0 4 124 0 2 272 6 0 24 0 1 7 5 4 12 1 5 27 1 6 417 0 1 8 2 1 39 1 0 11 0 1 40 0 2 250 1 3 161 8 5 124 1 0 13 54 11 15 4 0 245 0 1 25 1 0 47 13 5 219 6 12 183 5 14 41 0 12 131 0 4 75 0 4 145 0 6 78 1 0 490 chain 566496 chr1 248956422 + 197707714 197713746 L1HS 6032 + 0 6031 50 3087 1 0 2944 chain 66120 chr1 248956422 + 197802331 197803138 L1HS 6032 + 1 814 24853 196 0 1 54 5 4 486 1 0 29 12 17 6 0 2 18 chain 141184 chr1 248956422 + 197803138 197804683 L1PA3long 6157 + 4604 6149 13012 1545 chain 32749 chr1 248956422 + 197820583 197821111 L1MA3 4352 + 3852 4347 39715 194 0 1 45 35 14 7 3 0 123 3 0 5 0 1 16 1 0 24 13 11 24 1 0 11 1 0 4 6 3 12 chain 6862 chr1 248956422 + 197829019 197829146 L1MC3 1789 + 268 392 78094 37 29 26 61 chain 7945 chr1 248956422 + 197829259 197829646 L1PA7 6471 + 4464 4861 11963 205 0 8 44 0 2 138 chain 493649 chr1 248956422 + 197829755 197835283 L1PA4 6152 + 621 6151 3322 963 0 1 4307 0 1 258 chain 32661 chr1 248956422 + 197835294 197836885 L1PA7 6471 + 4861 6470 11963 212 0 3 272 2 1 275 0 2 13 0 16 273 0 1 40 1 0 489 2 0 12 chain 5194 chr1 248956422 + 197838294 197838360 MER41B 635 + 481 547 84713 66 chain 286094 chr1 248956422 + 198035058 198038769 HERVH-int 3825 + 0 3825 7256 333 1 0 197 1 0 11 1 0 4 0 1 24 1 0 10 1 0 12 4 0 5 6 0 6 3 1 14 43 38 14 43 0 13 2 0 14 1 0 14 109 0 68 1 0 447 15 0 455 8 35 299 0 10 112 0 3 504 0 5 421 9 11 39 8 218 260 0 45 96 0 4 82 chain 2859 chr1 248956422 + 198044294 198044329 MER58B 340 + 176 213 101157 17 0 2 18 chain 15152 chr1 248956422 + 198080807 198080986 THE1B 368 + 190 368 62092 103 1 0 75 chain 3512 chr1 248956422 + 198084500 198084539 5S 121 + 0 39 95149 39 chain 32794 chr1 248956422 + 198105790 198106406 LTR59 565 + 0 565 39676 30 1 0 68 153 99 44 0 8 54 2 1 94 5 0 120 5 7 40 chain 4483 chr1 248956422 + 198224137 198224272 Tigger3b 1229 + 1 142 88427 20 35 42 41 23 22 16 chain 23825 chr1 248956422 + 198368517 198368772 L1PA3long 6157 + 5715 5970 51061 255 chain 51489 chr1 248956422 + 198404667 198405393 LTR12 884 + 0 869 29051 24 1 0 7 4 5 4 1 0 49 25 0 26 0 25 47 0 157 34 2 0 210 6 0 92 11 5 66 6 7 111 chain 68712 chr1 248956422 + 198453756 198454531 L1PA4 6152 + 5102 5877 24281 775 chain 6682 chr1 248956422 + 198670901 198670982 MER2 342 + 134 215 78697 81 chain 12756 chr1 248956422 + 198761066 198761237 L1PA13 3608 + 3190 3357 65509 83 2 0 50 1 0 13 1 0 21 chain 3085 chr1 248956422 + 198834371 198834453 MADE1 96 - 0 96 98906 18 26 41 18 2 1 18 chain 127134 chr1 248956422 + 198872266 198873691 L1PA5 6144 + 3812 5241 14403 534 0 4 891 chain 29639 chr1 248956422 + 198941880 198942254 L1PA6 6164 + 5789 6162 42441 213 2 0 5 8 10 135 1 0 10 chain 107778 chr1 248956422 + 199024428 199025579 L1HS 6032 + 4880 6031 17354 1151 chain 9292 chr1 248956422 + 199058509 199058705 L1PB1 5432 + 5244 5420 71926 37 1 0 6 32 21 19 3 1 4 1 0 14 2 0 24 1 0 21 1 0 11 1 0 18 chain 26009 chr1 248956422 + 199074496 199074863 MLT2A1 477 + 0 477 47705 168 5 2 25 0 28 104 5 99 11 11 2 38 chain 3181 chr1 248956422 + 199097537 199097686 LTR12 884 + 115 163 98070 31 101 0 17 chain 32116 chr1 248956422 + 199099186 199099639 MLT2A1 477 + 0 463 40258 168 5 2 9 0 1 23 0 1 177 16 4 9 1 0 6 4 0 9 3 31 23 chain 6633 chr1 248956422 + 199174918 199175134 L1MB8 1703 + 651 868 78863 28 120 121 68 chain 24343 chr1 248956422 + 199256753 199257108 THE1B 368 + 0 368 50260 44 6 21 101 7 6 20 3 1 108 0 1 4 15 15 47 chain 4271 chr1 248956422 + 199260006 199260057 MLT1F2 592 + 480 531 89698 51 chain 28800 chr1 248956422 + 199276970 199277344 THE1B 368 + 0 368 43626 169 7 6 26 7 0 101 0 2 64 chain 206391 chr1 248956422 + 199338228 199341523 L1PA13 3608 + 139 3481 9491 20 5 4 13 7 4 22 30 18 61 16 14 9 0 2 92 117 106 12 3 1 17 1 0 97 2 0 197 8 4 7 20 0 113 5 126 29 0 1 21 0 1 29 2 5 20 7 0 56 0 1 39 7 8 135 4 5 186 4 5 107 12 12 67 37 38 45 12 9 45 4 0 50 0 2 30 11 12 328 5 6 36 25 24 199 9 0 92 0 2 205 4 0 105 0 1 34 1 7 57 2 0 28 1 0 113 2 0 63 8 7 48 1 0 5 2 0 11 11 12 25 2 0 4 2 0 20 1 0 13 chain 30707 chr1 248956422 + 199355623 199356022 L1PA8 5853 + 5461 5853 41382 5 0 1 97 1 0 44 2 0 54 1 0 13 5 4 9 1 0 52 2 1 22 1 0 90 chain 196973 chr1 248956422 + 199364767 199366972 L1PA4 6152 + 3314 5520 9812 752 0 1 4 1 0 347 0 1 1101 chain 21933 chr1 248956422 + 199469609 199471071 L1HS 6032 + 4585 6032 53925 824 15 0 623 chain 39919 chr1 248956422 + 199554104 199554533 L1PA2 6032 + 5595 6024 34722 429 chain 116194 chr1 248956422 + 199554606 199557987 L1MA3 4352 + 419 4021 16187 57 1 3 108 1 0 116 14 12 58 7 5 90 1 0 8 1 0 144 0 1 5 1 0 50 1 0 5 1 0 29 1 0 110 1 6 31 1 2 6 0 1 42 1 0 220 2 1 58 1 0 23 1650 1875 53 0 1 20 3 5 120 2 0 27 23 24 169 2 0 117 chain 14743 chr1 248956422 + 199595522 199595860 L1PB1 5432 + 5105 5419 62609 9 1 0 21 1 0 21 17 11 53 2 1 11 6 5 18 7 14 11 1 0 16 3 0 6 15 6 19 24 19 24 1 0 21 1 0 13 1 0 15 chain 318987 chr1 248956422 + 199599135 199603306 L1P3 4156 + 0 4095 6424 251 2 1 66 3 2 85 37 0 12 5 9 230 1 0 19 22 23 499 6 5 67 0 1 328 0 3 50 1 0 39 7 12 47 0 1 388 0 1 328 57 25 116 0 1 20 0 1 52 0 7 91 1 3 68 26 0 3 9 0 141 7 5 97 0 4 263 0 1 180 3 7 7 1 0 147 0 1 123 1 0 265 chain 259460 chr1 248956422 + 199604797 199607813 L1PA3long 6157 + 3118 6155 7988 206 6 8 309 0 1 416 0 1 393 0 1 85 0 2 195 0 1 589 0 1 4 0 1 59 1 0 599 0 12 154 chain 39309 chr1 248956422 + 199626296 199626743 L1PA7 6471 + 6012 6459 35140 447 chain 520607 chr1 248956422 + 199632550 199639004 L1PA7 6471 + 3 6470 2248 313 12 13 62 1 0 20 0 1 80 0 3 848 0 1 4 1 0 411 1 0 314 0 1 359 0 1 201 1 2 64 1 0 101 0 6 79 3 7 129 7 8 466 1 0 31 0 1 180 0 1 291 6 0 223 0 1 361 1 0 406 0 1 9 12 13 126 12 0 472 2 1 10 0 4 72 0 2 524 0 4 5 0 2 211 1 2 20 chain 528144 chr1 248956422 + 199647362 199653471 L1PA5 6144 + 4 6144 1907 131 7 33 868 0 2 131 9 0 275 0 4 367 0 1 63 0 1 433 4 3 5 1 0 848 0 1 332 1 0 126 0 1 928 0 7 63 0 1 666 2 1 849 chain 2938 chr1 248956422 + 199677774 199677810 L1MEf 1413 + 950 986 100515 36 chain 4020 chr1 248956422 + 199700542 199700714 L1MC3 1789 + 98 281 91306 34 111 122 27 chain 16345 chr1 248956422 + 199707053 199707233 L1PA2 6032 + 5850 6030 60577 180 chain 103408 chr1 248956422 + 199712665 199714134 L1PA13 3608 + 2107 3547 17899 33 2 0 8 0 2 148 0 3 531 0 7 94 0 2 37 3 5 152 1 0 31 1 0 113 2 0 62 1 0 21 2 0 35 1 0 4 3 1 47 2 0 5 2 0 20 1 0 24 30 12 14 14 7 10 4 1 11 chain 158873 chr1 248956422 + 199731203 199732946 L1PA5 6144 + 4129 5872 11816 1743 chain 28068 chr1 248956422 + 199781650 199782107 L1PB3 3668 + 3164 3595 44767 5 1 0 105 0 1 16 1 0 187 20 4 18 12 10 18 3 1 33 11 7 13 1 0 13 chain 9210 chr1 248956422 + 199814727 199814930 MSTA 426 + 0 223 72101 66 22 21 21 22 50 14 2 0 33 4 0 8 1 0 10 chain 17511 chr1 248956422 + 199843091 199843341 L1MA2 4263 + 3873 4114 59233 81 1 0 10 2 1 93 7 0 11 1 2 33 1 0 10 chain 11184 chr1 248956422 + 199908678 199908821 MER21B 843 + 325 476 68274 114 0 8 29 chain 113585 chr1 248956422 + 199922718 199925300 L1PREC2 3366 + 1114 2693 16604 21 6 1 81 0 1 29 1 2 27 16 17 17 1 0 271 2 0 171 682 19 78 6 7 93 0 2 40 1 2 213 15 7 129 0 1 4 2 1 36 331 0 309 chain 42709 chr1 248956422 + 199930108 199930588 L1PA5 6144 + 5659 6139 32943 480 chain 2943 chr1 248956422 + 199933905 199934015 L1ME1 1623 + 1380 1485 100469 23 1 0 4 0 1 10 56 51 16 chain 94396 chr1 248956422 + 199959492 199960720 LTR12C 1709 + 2 1702 18983 276 3 16 44 3 46 80 3 0 5 4 5 176 0 278 143 0 47 100 19 12 210 0 101 80 5 4 77 chain 9420 chr1 248956422 + 199984798 199984905 MER4E1 777 + 663 770 71653 107 chain 530155 chr1 248956422 + 200185367 200191246 L1PA4 6152 + 2 5879 1820 3123 0 1 197 1 0 366 1 0 1605 1 0 585 chain 27356 chr1 248956422 + 200294802 200295228 L1PA16 3655 + 3153 3589 45755 51 9 8 79 35 44 39 0 3 39 3 5 157 3 0 11 chain 13892 chr1 248956422 + 200470091 200470315 L1MA5A 2387 + 2121 2306 63749 38 2 0 22 5 0 38 3 0 13 28 0 63 1 0 11 chain 8496 chr1 248956422 + 200586643 200586767 L1PB3 3668 + 3352 3475 73682 36 15 14 73 chain 4564 chr1 248956422 + 200587091 200587143 MER1B 344 - 101 153 87998 52 chain 14568 chr1 248956422 + 200839534 200839839 L1PB1 5432 + 5145 5423 62828 13 8 4 6 2 0 52 2 1 15 1 0 45 1 0 15 27 15 11 7 5 5 1 0 14 2 0 24 1 0 4 4 6 12 1 0 12 1 0 19 chain 26088 chr1 248956422 + 201000831 201001127 AluSp 311 + 6 302 47592 296 chain 7983 chr1 248956422 + 201104387 201104542 LTR37B 484 + 113 320 74917 18 21 72 21 9 10 86 chain 189202 chr1 248956422 + 201231120 201233303 L1PA6 6164 + 3995 6162 10157 281 0 3 410 4 7 872 22 0 594 chain 47352 chr1 248956422 + 201645039 201645561 L1PA4 6152 + 5629 6151 30523 522 chain 182446 chr1 248956422 + 201699023 201701420 L1PA6 6164 + 4086 6162 10473 1207 0 4 13 1 2 21 0 1 86 1 0 182 0 2 194 327 0 206 1 0 158 chain 6475 chr1 248956422 + 201733405 201733492 U6 107 + 0 94 79421 58 1 8 28 chain 14707 chr1 248956422 + 201815409 201815714 L1MA8 2339 + 1962 2226 62669 47 1 0 66 27 25 19 33 0 38 2 3 28 16 10 28 chain 5780 chr1 248956422 + 201917966 201918092 MER45A 178 + 57 177 82011 10 16 0 35 20 30 45 chain 5216 chr1 248956422 + 201933028 201933089 L1ME3A 1206 + 950 1011 84601 61 chain 3943 chr1 248956422 + 201953225 201953269 MLT2B2 565 + 516 560 91814 44 chain 13257 chr1 248956422 + 202033530 202033690 L1PA6 6164 + 6006 6162 64698 150 4 0 6 chain 3963 chr1 248956422 + 202038845 202038892 L1MB3 1562 + 1374 1421 91674 47 chain 25200 chr1 248956422 + 202064795 202065096 AluSp 311 + 0 304 48947 84 7 10 210 chain 5998 chr1 248956422 + 202070861 202070933 HY3 101 + 17 92 81078 52 0 3 20 chain 4099 chr1 248956422 + 202096400 202096450 Charlie1a 1436 + 1324 1374 90792 50 chain 22347 chr1 248956422 + 202137360 202137645 AluSp 311 + 6 299 53345 13 9 18 176 1 0 86 chain 4955 chr1 248956422 + 202167684 202167740 LTR2C 499 + 443 499 85865 56 chain 5086 chr1 248956422 + 202168442 202168498 LTR2C 499 + 443 499 85215 56 chain 2920 chr1 248956422 + 202226344 202226375 U7 62 + 1 32 100668 31 chain 3076 chr1 248956422 + 202244261 202244296 MER5A 189 + 128 163 99009 35 chain 7553 chr1 248956422 + 202339649 202339748 MER2 342 + 110 215 75985 58 0 6 41 chain 8337 chr1 248956422 + 202357141 202357243 MLT1D 503 + 401 503 74065 102 chain 11602 chr1 248956422 + 202376861 202377085 MER30 238 + 0 238 67566 15 19 18 74 3 0 11 6 21 10 5 5 30 6 9 45 chain 46521 chr1 248956422 + 202381898 202382430 L1PA5 6144 + 5609 6141 30835 532 chain 3303 chr1 248956422 + 202500166 202500203 tRNA-Glu-GAG 37 + 0 37 96992 37 chain 65150 chr1 248956422 + 202610335 202611039 L1PA4 6152 + 4001 4705 25148 704 chain 11817 chr1 248956422 + 202887247 202887456 MER30 238 + 0 238 67176 22 15 22 54 3 1 12 4 17 25 1 7 12 0 2 22 0 3 39 chain 25905 chr1 248956422 + 203006139 203006595 LTR21A 479 + 0 479 47859 41 62 41 36 0 14 125 0 3 48 9 37 80 9 11 14 8 5 24 chain 8994 chr1 248956422 + 203019112 203019264 Tigger4a 237 + 69 233 72570 34 0 7 12 16 9 12 0 4 32 3 11 43 chain 22354 chr1 248956422 + 203191311 203191787 MER31A 484 + 0 484 53339 96 1 0 33 56 57 81 0 3 16 39 44 65 55 56 19 1 0 14 chain 6821 chr1 248956422 + 203193283 203193370 MER33 330 + 139 226 78234 87 chain 85670 chr1 248956422 + 203234537 203235560 MER11B 1079 + 0 1042 20510 316 1 18 203 0 1 4 6 5 223 1 3 269 chain 427717 chr1 248956422 + 203256489 203262990 L1P2 5180 + 2 5035 4780 60 1 2 86 2 1 43 1 0 53 1 0 214 1 0 54 1 0 272 1 0 6 1 0 144 0 3 463 1483 2 802 1 15 96 3 1 870 1 0 1159 6 10 630 0 1 46 chain 93439 chr1 248956422 + 203313873 203314936 L1PA6 6164 + 5088 6162 19124 224 0 8 167 0 3 672 chain 128157 chr1 248956422 + 203392543 203393955 L1PA3long 6157 + 4735 6147 14258 1412 chain 525621 chr1 248956422 + 203411505 203418115 L1PA5 6144 + 0 6130 2018 121 0 14 24 13 25 647 0 1 196 1 2 4 1 0 27 0 1 87 0 3 17 9 0 537 0 10 47 0 4 187 0 1 358 2 1 677 518 0 1366 0 3 934 1 0 836 chain 43972 chr1 248956422 + 203414465 203414973 MER9a2 513 + 0 508 32147 508 chain 60074 chr1 248956422 + 203435969 203436661 L1PA5 6144 + 4453 5145 26352 528 0 1 129 2 1 33 chain 58031 chr1 248956422 + 203436661 203437320 L1PA5 6144 + 5151 5810 26953 659 chain 27611 chr1 248956422 + 203437320 203437653 L1PA5 6144 + 5811 6144 45444 333 chain 7584 chr1 248956422 + 203446488 203446615 MLT1A 405 + 233 361 75901 48 18 19 15 0 1 21 1 0 24 chain 8726 chr1 248956422 + 203460979 203461377 L1MA8 2339 + 1824 2189 73159 16 11 7 24 5 7 13 166 162 40 50 26 46 3 0 24 chain 28864 chr1 248956422 + 203490979 203491376 LTR7 482 + 0 470 43530 50 26 64 110 0 1 40 0 31 9 0 1 80 0 2 82 chain 23694 chr1 248956422 + 203596339 203596647 AluSp 311 + 1 303 51284 131 25 19 152 chain 56826 chr1 248956422 + 203654284 203655330 Tigger1 2417 + 1248 1998 27317 37 0 17 242 0 1 40 320 2 10 0 1 287 0 3 110 chain 39323 chr1 248956422 + 203758825 203759659 MER41A 554 + 0 530 35135 314 0 1 111 1 2 12 0 17 25 323 0 48 chain 44082 chr1 248956422 + 203762145 203762698 MER41A 554 + 0 554 32094 285 5 6 263 chain 2780 chr1 248956422 + 203780098 203780129 MER45B 1037 + 782 813 101764 31 chain 8452 chr1 248956422 + 203899524 203899633 LTR37B 484 + 216 325 73793 109 chain 18448 chr1 248956422 + 203900705 203900943 LTR12C 1709 + 928 1215 58170 66 1 3 74 0 47 97 chain 4748 chr1 248956422 + 203931170 203931347 L1MA7 2200 + 1918 2081 86970 31 1 0 24 100 87 21 chain 7042 chr1 248956422 + 203999243 203999345 MER5A1 166 + 29 143 77469 49 5 17 48 chain 3102 chr1 248956422 + 204034657 204034690 MLT1F2 592 + 546 579 98779 33 chain 25701 chr1 248956422 + 204052177 204052482 AluSp 311 + 0 301 48168 57 4 0 244 chain 4683 chr1 248956422 + 204052511 204052588 Ricksha_c 1012 + 95 168 87367 32 1 2 16 1 0 6 4 0 17 chain 9877 chr1 248956422 + 204176010 204176137 LTR15 485 + 353 478 70663 84 1 0 5 2 0 14 0 1 21 chain 47308 chr1 248956422 + 204207840 204208840 L1PB1 5432 + 4649 5422 30535 54 0 2 99 12 9 262 245 45 10 5 4 10 1 0 13 6 2 9 2 0 52 2 1 14 2 1 45 1 0 15 26 15 15 12 9 11 2 0 24 1 0 6 0 1 15 1 0 11 0 2 17 chain 29666 chr1 248956422 + 204234572 204234948 MLT2A1 477 + 0 382 42416 140 0 1 27 1 5 99 6 7 103 chain 474789 chr1 248956422 + 204235122 204240742 HERVL-int 5654 + 36 5654 3751 177 7 6 24 0 4 76 0 2 274 30 0 50 1 0 293 0 5 218 0 1 1295 1 0 501 0 2 48 0 1 1076 0 12 387 0 1 19 3 1 386 0 3 306 0 1 229 0 1 219 chain 32598 chr1 248956422 + 204240742 204241166 MLT2A1 477 + 0 470 39866 99 0 12 29 0 1 27 1 5 212 8 38 7 1 0 40 chain 10492 chr1 248956422 + 204271070 204271237 MER30 238 + 37 237 69428 31 0 8 22 0 2 9 22 48 34 3 0 46 chain 24128 chr1 248956422 + 204311215 204311504 AluSp 311 + 6 295 50609 289 chain 6881 chr1 248956422 + 204506526 204506599 tRNA-Lys-AAA 73 + 0 73 78030 73 chain 4781 chr1 248956422 + 204540304 204540356 Tigger4b 360 + 241 293 86793 52 chain 3440 chr1 248956422 + 204556054 204556093 LTR8 732 + 586 625 95728 39 chain 24276 chr1 248956422 + 204629413 204629756 THE1A 353 + 0 353 50381 47 0 1 31 6 15 17 0 2 6 17 15 219 chain 26483 chr1 248956422 + 204641027 204641427 MER65A 464 + 61 464 47001 74 0 1 6 1 3 70 14 15 85 1 0 42 8 6 79 8 10 12 chain 33184 chr1 248956422 + 204790994 204791357 L1PA4 6152 + 5780 6143 39372 363 chain 11614 chr1 248956422 + 204793313 204793464 MER96B 391 + 23 172 67546 21 2 0 128 chain 3355 chr1 248956422 + 204797739 204797802 LTR33 499 + 419 480 96541 22 16 14 25 chain 38637 chr1 248956422 + 204881725 204882210 MER31A 484 + 0 484 35617 476 1 0 8 chain 8478 chr1 248956422 + 204918320 204918468 MER30 238 + 62 238 73725 31 30 61 45 3 0 39 chain 4914 chr1 248956422 + 205027251 205027312 MER5A 189 + 1 62 86092 61 chain 23374 chr1 248956422 + 205117388 205117667 AluSp 311 + 10 289 51807 279 chain 34615 chr1 248956422 + 205138668 205139107 LTR2 463 + 0 462 38278 162 8 29 4 1 0 13 0 1 153 12 13 65 0 1 21 chain 24347 chr1 248956422 + 205154656 205154969 THE1C-int 1605 + 49 423 50252 61 0 54 151 12 18 48 0 1 41 chain 25446 chr1 248956422 + 205302613 205302898 AluSp 311 + 4 289 48559 285 chain 5652 chr1 248956422 + 205474150 205474214 tRNA-Lys-AAA 73 + 8 72 82553 64 chain 3025 chr1 248956422 + 205572884 205572929 L1MB7 1623 + 1385 1429 99542 37 1 0 7 chain 10598 chr1 248956422 + 205735242 205735437 Tigger3a 397 + 158 374 69235 121 57 78 17 chain 99508 chr1 248956422 + 205855999 205857446 L1PB 1623 + 105 1515 18353 7 1 0 5 1 0 70 1 0 4 2 0 78 1 0 134 1 0 12 1 0 68 10 9 90 1 2 4 1 0 517 18 8 10 9 1 322 1 0 7 8 7 24 1 0 4 3 0 14 4 0 13 chain 111821 chr1 248956422 + 205858386 205859994 HERVK14-int 1672 + 6 1665 16832 24 1 0 10 1 0 31 11 11 8 1 0 39 13 13 159 14 18 19 8 6 224 1 0 47 1 0 204 1 0 35 0 1 6 1 0 53 6 73 73 6 4 8 2 0 32 2 1 203 3 1 107 1 0 63 1 0 31 2 0 9 1 0 46 17 18 76 1 0 6 chain 78538 chr1 248956422 + 205871745 205873224 HERVH-int 3825 + 2095 3824 21971 13 1 3 168 5 6 5 1 0 308 0 8 194 11 0 184 437 689 5 1 0 146 chain 26855 chr1 248956422 + 205874669 205875082 LTR7B 505 + 0 495 46463 108 0 10 52 14 82 33 1 0 43 18 24 89 14 13 41 chain 42450 chr1 248956422 + 205890690 205891197 MER9a2 513 + 0 513 33095 445 0 6 62 chain 250745 chr1 248956422 + 205892532 205895642 HERVK9-int 4720 + 36 4720 8213 13 8 5 4 1 0 39 0 6 21 1 0 7 2 1 30 1 0 91 16 0 14 0 13 406 0 8 51 4 0 437 0 6 308 0 924 231 9 649 9 2 0 489 18 20 240 1 2 64 0 3 70 0 1 198 1 0 324 chain 41522 chr1 248956422 + 205895642 205896155 MER9a2 513 + 0 508 33667 12 7 1 64 0 2 286 1 0 143 chain 496607 chr1 248956422 + 205899311 205905605 L1PA6 6164 + 0 6152 3245 149 0 1 110 1 2 82 47 20 86 19 0 115 57 0 4 19 0 77 0 5 92 26 5 39 0 17 588 5 4 69 1 5 170 1 2 210 68 11 454 9 8 864 0 1 39 2 3 277 0 3 482 1 2 283 1 0 89 0 4 522 4 5 272 12 14 115 0 15 147 3 5 298 10 11 240 0 1 135 chain 22893 chr1 248956422 + 205994984 205995273 L1PA5 6144 + 5859 6143 52522 137 0 1 138 6 0 8 chain 38117 chr1 248956422 + 206052525 206053000 LTR2B 499 + 9 499 35976 5 1 0 55 3 0 42 0 19 178 0 1 8 1 0 182 chain 59363 chr1 248956422 + 206054126 206054886 Harlequin-int 5206 + 125 887 26547 7 0 3 8 1 0 6 3 0 61 0 1 11 2 1 65 0 1 17 0 2 50 0 5 118 1 0 4 3 0 123 5 4 275 chain 37481 chr1 248956422 + 206058436 206058912 LTR2B 499 + 9 499 36416 5 1 0 55 4 0 36 0 19 184 0 1 8 1 0 182 chain 160422 chr1 248956422 + 206063364 206065290 SVA_D 2077 + 7 2076 11727 901 3 0 8 3 1 26 56 16 77 0 2 43 1 0 4 44 6 38 0 127 78 0 98 644 chain 4130 chr1 248956422 + 206064305 206064361 SVA_D 2077 + 1130 1186 43359 56 chain 3200 chr1 248956422 + 206064486 206064522 SVA_D 2077 + 1487 1525 48466 28 0 2 8 chain 12125 chr1 248956422 + 206089014 206089169 MER75B 242 + 20 174 66617 89 1 0 65 chain 21621 chr1 248956422 + 206145401 206145671 AluY 311 + 7 281 54326 119 0 1 40 0 1 100 0 2 11 chain 25634 chr1 248956422 + 206166150 206166443 AluY 311 + 8 302 48263 124 0 1 169 chain 12554 chr1 248956422 + 206195019 206195207 Tigger1 2417 + 2221 2404 65891 35 9 8 73 0 1 15 1 0 9 4 0 42 chain 41740 chr1 248956422 + 206249248 206249742 L1PA7 6471 + 5966 6459 33525 173 1 0 320 chain 8326 chr1 248956422 + 206253392 206253492 MSTD 398 + 220 320 74092 100 chain 24497 chr1 248956422 + 206378553 206378872 LTR12 884 + 2 884 50028 23 9 8 22 0 41 171 0 523 94 chain 13081 chr1 248956422 + 206465748 206465944 MER30 238 + 0 238 64962 18 1 19 53 7 32 7 4 0 67 0 3 39 chain 36442 chr1 248956422 + 206547286 206547747 MER1A 529 + 67 529 37111 384 4 5 73 chain 26565 chr1 248956422 + 206616549 206616883 LTR14A 344 + 0 344 46881 102 0 11 73 13 12 146 chain 3850 chr1 248956422 + 206616883 206616930 L1MC3 1789 + 338 385 92502 47 chain 18811 chr1 248956422 + 206623848 206624182 THE1C 375 + 0 341 57769 15 2 0 32 0 6 17 20 21 18 17 6 64 0 3 18 9 6 19 6 19 97 chain 30612 chr1 248956422 + 206626556 206626913 L1PA5 6144 + 5775 6134 41459 200 0 1 24 1 2 132 chain 107152 chr1 248956422 + 206641680 206642919 L1PA5 6144 + 4880 6123 17418 20 0 5 969 1 3 73 3 5 134 5 0 34 chain 28704 chr1 248956422 + 206776584 206776910 LTR17 781 + 0 326 43792 326 chain 40601 chr1 248956422 + 206778947 206779513 LTR14B 630 + 10 630 34223 151 1 0 38 0 40 23 0 11 21 0 25 74 0 9 34 30 0 194 chain 13950 chr1 248956422 + 206796519 206796756 Tigger3a 397 + 28 337 63670 44 17 67 39 1 0 79 21 44 36 chain 13916 chr1 248956422 + 206851555 206851755 L1MA2 4263 + 990 1627 63716 43 0 2 9 2 0 7 3 7 108 3 436 25 chain 3574 chr1 248956422 + 206998613 206998787 L1MB7 1623 + 1248 1413 94635 17 2 0 3 2 0 14 107 102 29 chain 4611 chr1 248956422 + 207035882 207035946 MER99 766 + 365 428 87743 59 1 0 4 chain 27776 chr1 248956422 + 207095681 207096048 MSTA 426 + 28 397 45215 102 1 0 83 15 19 13 2 1 151 chain 3576 chr1 248956422 + 207130415 207130534 L1MB7 1623 + 1304 1418 94612 15 25 24 21 28 24 30 chain 42058 chr1 248956422 + 207142111 207143495 L1PA7 6471 + 5863 6470 33320 63 777 0 544 chain 2905 chr1 248956422 + 207161988 207162025 L1M1 2793 + 2495 2532 100801 37 chain 508957 chr1 248956422 + 207196003 207202062 L1PA6 6164 + 37 6149 2808 199 0 2 55 1 0 224 0 2 48 1 0 376 0 6 411 0 1 111 0 1 57 4 0 213 1 29 562 17 0 248 0 4 27 0 9 523 0 5 8 14 10 12 4 5 314 6 33 830 0 4 277 5 0 295 5 0 1211 chain 545401 chr1 248956422 + 207206734 207212907 L1PA4 6152 + 0 6152 1010 653 6 7 1291 20 0 305 0 2 1416 0 2 1248 5 0 92 6 5 70 5 5 1056 chain 152495 chr1 248956422 + 207237039 207239362 L1MA2 4263 + 1764 4058 12201 69 0 1 57 2 5 22 2 60 10 15 0 6 71 0 122 1 0 118 10 5 230 0 1 159 4 0 13 1 0 94 1 0 237 13 4 187 0 2 133 11 14 137 6 22 94 1 0 18 2 0 6 2 0 6 1 0 32 0 2 31 13 12 44 1 5 74 13 10 56 1 8 82 31 23 56 6 5 22 chain 3691 chr1 248956422 + 207265201 207265244 MLT2B3 573 + 527 570 93673 43 chain 26072 chr1 248956422 + 207280306 207280767 L1PA15 4387 + 3898 4356 47621 35 1 0 171 1 0 20 7 15 46 1 0 21 4 0 10 2 1 25 0 1 9 21 18 19 41 40 27 chain 22049 chr1 248956422 + 207290648 207290992 THE1B 368 + 0 368 53771 44 14 29 99 1 0 22 39 49 125 chain 121385 chr1 248956422 + 207290992 207292574 THE1B-int 1605 + 0 1605 15281 35 0 2 132 8 4 257 0 25 71 20 21 331 12 7 164 0 1 436 0 2 106 1 2 9 chain 20301 chr1 248956422 + 207292574 207292913 THE1B 368 + 0 368 56016 44 0 15 71 10 11 31 1 0 16 53 63 55 0 4 58 chain 26986 chr1 248956422 + 207307729 207308013 AluYb8 318 + 34 318 46289 284 chain 34608 chr1 248956422 + 207320252 207320661 L1PA7 6471 + 6047 6457 38283 268 0 1 141 chain 26037 chr1 248956422 + 207369733 207370076 L1PA8 5853 + 5515 5851 47673 49 1 0 46 2 0 69 1 0 13 1 0 48 2 1 19 2 1 90 chain 33986 chr1 248956422 + 207393722 207394489 LTR3B_ 500 + 0 467 38715 76 1 0 75 7 17 126 1 0 8 2 1 58 312 0 60 0 5 41 chain 5615 chr1 248956422 + 207438787 207438895 L1PB3 3668 + 3482 3582 82730 19 2 0 27 3 1 34 10 6 13 chain 20740 chr1 248956422 + 207485086 207485345 L1PA7 6471 + 6209 6466 55442 250 2 0 7 chain 442549 chr1 248956422 + 207589320 207594571 L1PA7 6471 + 1162 6429 4529 291 11 7 100 1 0 185 0 9 281 1 0 454 1 0 151 0 1 65 0 4 22 0 5 334 0 2 122 0 1 109 0 1 11 4 2 71 0 1 158 0 4 23 0 2 328 0 1 724 0 2 197 1 0 119 13 0 338 1 0 333 0 4 74 0 2 673 0 1 55 chain 22787 chr1 248956422 + 207618771 207619065 AluSc 308 + 8 308 52690 48 8 11 73 0 2 63 1 2 101 chain 18359 chr1 248956422 + 207681928 207682147 L1PA7 6471 + 6242 6461 58289 219 chain 45942 chr1 248956422 + 207718767 207719272 L1PA2 6032 + 5528 6031 31085 491 2 0 12 chain 550875 chr1 248956422 + 207730466 207736495 L1PA2 6032 + 2 6032 688 253 2 1 1357 0 1 1529 0 2 1368 1 0 1519 chain 38342 chr1 248956422 + 207740548 207741125 LTR9B 643 + 0 594 35820 187 0 1 10 32 31 78 0 1 24 8 11 78 25 24 72 0 14 63 chain 145874 chr1 248956422 + 207745208 207747412 HUERS-P3b-int 2065 + 13 2052 12625 81 3 0 222 83 8 118 9 9 11 0 9 107 3 0 109 4 0 30 10 0 59 2 1 51 4 3 17 3 2 171 4 0 63 15 2 134 9 8 143 14 16 84 1 0 44 29 2 84 2 0 13 1 0 24 1 0 20 0 3 67 3 1 75 3 0 6 0 1 8 4 1 11 0 1 52 4 0 57 1 0 49 0 1 40 28 7 14 chain 4719 chr1 248956422 + 207844342 207844396 L1MB3 1562 + 1266 1320 87133 54 chain 25591 chr1 248956422 + 207994786 207995139 L1PA8 5853 + 5508 5853 48336 13 1 0 43 1 0 45 2 0 69 2 1 8 2 1 52 2 1 19 1 0 93 chain 11640 chr1 248956422 + 208339376 208339563 MER53 195 + 6 195 67497 80 24 26 83 chain 31188 chr1 248956422 + 208353969 208354334 L1PA5 6144 + 5778 6143 40985 365 chain 11488 chr1 248956422 + 208357201 208357360 MER30 238 + 53 238 67764 54 2 31 55 3 0 45 chain 29684 chr1 248956422 + 208585635 208586007 THE1C 375 + 0 375 42384 142 0 4 204 1 0 25 chain 257551 chr1 248956422 + 208618981 208623120 L1MA1 4479 + 314 4162 8043 39 34 12 283 7 8 113 0 1 17 4 0 38 4 5 12 4 0 273 11 5 41 38 42 52 0 1 27 0 1 231 0 1 163 10 21 18 0 1 182 0 7 39 1 0 4 7 8 160 1 0 1 2 0 36 1 0 9 1 0 223 18 20 11 14 15 40 0 3 43 12 11 71 1 0 43 0 1 21 276 1 49 11 12 42 3 1 32 1 0 46 0 1 15 1 0 81 12 11 27 11 9 167 2 0 5 0 1 8 4 0 76 1 0 12 5 0 41 12 7 50 0 4 24 3 0 130 3 4 192 1 0 24 2 0 13 8 7 12 0 2 53 1 0 19 2 0 14 1 0 88 9 5 119 8 7 17 0 23 21 4 3 9 1 0 11 chain 554392 chr1 248956422 + 208702700 208709027 L1PA3long 6157 + 4 6157 456 610 1 0 1068 0 2 38 0 6 2163 0 1 715 164 0 173 23 1 446 3 2 81 0 4 503 0 1 339 chain 121464 chr1 248956422 + 208739497 208740920 LTR12C 1709 + 0 1709 15267 212 4 6 42 1 2 409 0 280 161 1 0 4 4 2 106 0 4 30 1 3 448 chain 3260 chr1 248956422 + 208751147 208751284 MER5B 177 + 18 167 97374 21 87 99 29 chain 5182 chr1 248956422 + 208810100 208810158 MER5A 189 - 131 189 84763 58 chain 20423 chr1 248956422 + 208854473 208854774 MER51B 395 + 91 395 55860 6 0 6 107 10 8 27 13 12 138 chain 204969 chr1 248956422 + 208860136 208862903 L1PB2 3958 + 581 3377 9539 20 0 4 133 0 2 183 0 1 27 0 2 303 1 0 5 20 15 298 2 0 23 1 0 232 3 2 125 10 7 149 0 1 53 0 29 287 2 0 10 6 0 102 1 0 49 1 0 5 6 7 108 0 11 120 0 1 23 6 6 57 1 0 202 1 0 5 0 1 118 2 0 56 1 0 4 0 4 6 chain 3073 chr1 248956422 + 208981332 208981373 MIR 256 + 215 256 99049 41 chain 5161 chr1 248956422 + 208986889 208986955 MSTD 398 + 0 68 84855 58 0 2 8 chain 9537 chr1 248956422 + 208989627 208989747 L1PA16 3655 + 3348 3468 71403 120 chain 531656 chr1 248956422 + 208991457 208997570 L1PA5 6144 + 0 6135 1767 120 0 14 466 0 1 354 0 1 213 8 0 62 1 0 4 0 2 1076 3 1 145 0 1 487 0 1 30 0 5 2500 0 3 176 0 9 236 4 0 228 chain 8489 chr1 248956422 + 208997579 208997682 MER41A 554 + 360 466 73697 30 0 3 73 chain 4896 chr1 248956422 + 209004728 209004802 L1MC4 1079 + 553 623 86175 59 4 0 11 chain 2898 chr1 248956422 + 209041593 209041625 L1PA5 6144 + 5859 5891 100849 32 chain 22332 chr1 248956422 + 209041626 209041879 L1PA5 6144 + 5891 6144 53362 253 chain 122979 chr1 248956422 + 209052710 209054839 L1PA13 3608 + 113 1928 15028 23 12 9 18 1 0 14 3 0 25 27 16 73 2 0 111 0 3 11 8 7 5 1 0 17 2 0 16 6 2 17 2 1 17 2 0 11 10 8 17 1 0 41 0 5 51 2 0 9 313 1 299 6 4 109 1 0 60 1 0 5 0 4 16 0 1 20 2 5 121 0 1 105 0 2 112 3 7 22 0 4 120 0 1 127 1 2 40 5 8 4 0 1 6 0 5 76 chain 157059 chr1 248956422 + 209128437 209130220 SVA_D 2077 + 0 2077 11937 25 6 0 517 0 40 323 1 0 15 1 38 45 0 178 165 0 1 4 1 0 1 0 49 195 1 0 169 1 0 72 0 1 233 2 0 6 chain 36197 chr1 248956422 + 209132417 209132867 LTR2 463 + 0 463 37271 112 2 4 11 0 3 151 0 1 14 0 7 160 chain 73484 chr1 248956422 + 209141190 209142173 LTR5_Hs 974 + 0 974 23225 115 5 13 157 0 1 181 0 1 18 23 0 170 1 0 163 15 22 12 20 18 103 chain 27899 chr1 248956422 + 209184414 209185185 L1PB1 5432 + 4838 5415 45041 149 186 38 78 26 14 21 1 0 4 3 2 12 18 12 52 7 6 10 1 0 45 1 0 10 82 62 17 1 0 22 1 0 11 2 1 11 chain 28479 chr1 248956422 + 209261172 209261477 AluYa5 310 + 1 306 44160 305 chain 219032 chr1 248956422 + 209279997 209282383 L1PA3long 6157 + 3752 6156 9065 327 0 21 1854 3 0 202 chain 24956 chr1 248956422 + 209322096 209322366 L1PA3long 6157 + 5062 5332 49354 270 chain 74647 chr1 248956422 + 209322372 209323182 L1PA3long 6157 + 5339 6149 22926 810 chain 25368 chr1 248956422 + 209357944 209358268 L1PA7 6471 + 6108 6431 48671 12 12 11 300 chain 42869 chr1 248956422 + 209382902 209383456 MER41A 554 + 0 547 32854 87 2 1 80 7 0 262 0 1 116 chain 11110 chr1 248956422 + 209391401 209391696 MER47A 366 + 35 315 68395 15 54 55 103 78 62 45 chain 44621 chr1 248956422 + 209409969 209410498 MER41A 554 + 0 530 31780 232 0 1 297 chain 40055 chr1 248956422 + 209448804 209449256 LTR7 482 + 0 482 34619 260 1 32 62 1 0 128 chain 249005 chr1 248956422 + 209449258 209452462 HERVH-int 3825 + 0 3146 8266 212 0 11 266 2 0 43 5 0 38 129 0 10 1 0 24 29 0 15 8 0 11 8 46 22 2 1 57 0 1 7 0 2 11 1 4 442 15 0 460 13 33 70 7 15 205 0 4 65 0 1 209 0 12 22 0 1 4 0 1 745 9 11 30 0 28 7 chain 3237 chr1 248956422 + 209449914 209449952 HERVH-int 3825 + 532 570 97600 38 chain 38905 chr1 248956422 + 209453551 209453994 LTR7 482 + 0 474 35425 246 3 34 194 chain 2695 chr1 248956422 + 209485742 209485836 MER34A 573 + 7 63 102377 27 53 15 14 chain 33210 chr1 248956422 + 209491904 209492344 MER4A1 472 + 0 461 39338 18 19 36 175 1 3 110 0 2 117 chain 32439 chr1 248956422 + 209507991 209508354 L1PA4 6152 + 5782 6151 40000 346 0 6 17 chain 9957 chr1 248956422 + 209511213 209511754 L1MB7 1623 + 1064 1532 70513 17 26 15 91 153 125 11 1 0 14 8 6 19 112 90 20 55 46 14 chain 4263 chr1 248956422 + 209662427 209662480 MER81 114 + 41 94 89747 53 chain 49209 chr1 248956422 + 209739577 209740729 L1PB1 5432 + 4645 5420 29862 65 1 0 16 319 0 55 0 1 5 0 5 6 1 0 197 13 13 95 1 2 9 33 0 15 6 5 13 1 0 11 8 4 5 2 0 53 2 1 9 5 6 41 7 6 10 17 4 30 2 0 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 16 chain 8763 chr1 248956422 + 209816879 209817007 MER53 195 + 0 168 73071 73 9 49 46 chain 80169 chr1 248956422 + 209866595 209867653 MER11A 1151 + 0 1151 21597 23 1 0 32 0 99 22 8 0 20 1 0 3 1 0 13 3 0 15 0 4 63 0 2 86 6 7 268 0 2 16 1 0 130 14 14 43 3 0 210 0 4 9 7 6 60 chain 3753 chr1 248956422 + 209990662 209990757 L1MA3 4352 + 4258 4322 93214 24 1 0 6 1 0 17 33 4 13 chain 93592 chr1 248956422 + 210039382 210040525 L1PA7 6471 + 5308 6469 19097 284 7 11 301 1 0 50 0 12 170 0 1 273 1 5 44 2 0 10 chain 26110 chr1 248956422 + 210065197 210066800 THE1C 375 + 0 375 47555 116 1 0 66 12 12 9 0 3 36 1 0 95 1228 0 13 1 0 25 chain 55955 chr1 248956422 + 210109620 210110274 L1PA7 6471 + 5801 6467 27575 17 1 12 214 0 1 422 chain 15506 chr1 248956422 + 210120477 210120677 Tigger3c 601 + 339 569 61642 130 0 30 70 chain 4163 chr1 248956422 + 210154405 210154456 MER1B 344 + 284 335 90367 51 chain 20809 chr1 248956422 + 210157468 210157727 AluSc5 308 + 11 266 55351 9 4 0 246 chain 27574 chr1 248956422 + 210187603 210188020 LTR7B 505 + 0 505 45482 105 0 10 56 12 81 34 40 0 20 0 50 85 11 10 54 chain 69427 chr1 248956422 + 210190672 210191526 HERVH-int 3825 + 2970 3825 24135 46 1 0 148 2 3 413 0 1 244 chain 26576 chr1 248956422 + 210195300 210195670 LTR7B 505 + 0 497 46866 105 0 10 56 12 81 32 1 0 22 0 50 85 14 13 43 chain 16618 chr1 248956422 + 210206567 210206847 THE1D 372 + 81 372 60249 19 6 5 55 0 1 8 43 53 90 0 1 59 chain 9309 chr1 248956422 + 210238575 210238706 MER85 139 + 0 139 71894 95 7 15 29 chain 3623 chr1 248956422 + 210281387 210281472 Charlie4a 502 + 367 452 94253 29 14 0 8 8 22 26 chain 46118 chr1 248956422 + 210297687 210298236 MER41A 554 + 0 552 31005 317 0 3 232 chain 36418 chr1 248956422 + 210342979 210343466 LTR3B_ 500 + 0 493 37128 78 1 0 61 2 1 21 0 1 136 6 5 39 0 3 30 0 5 113 chain 22065 chr1 248956422 + 210450851 210451108 AluY 311 + 51 304 53739 77 4 0 176 chain 3469 chr1 248956422 + 210509045 210509124 MADE1 96 - 1 92 95461 22 20 36 13 4 0 20 chain 18789 chr1 248956422 + 210576461 210576671 L1PA4 6152 + 5936 6146 57799 210 chain 3394 chr1 248956422 + 210599150 210599221 MER3 215 + 89 160 96124 24 17 17 30 chain 4922 chr1 248956422 + 210632164 210632241 MLT1C 463 + 7 94 86045 12 9 19 56 chain 278525 chr1 248956422 + 210658568 210661794 L1PA6 6164 + 2631 5898 7469 558 0 1 85 1 3 130 0 4 9 0 1 128 0 13 599 0 4 172 0 1 704 2 0 268 1 0 4 0 5 97 0 13 468 chain 23090 chr1 248956422 + 210719396 210719710 L1PA8 5853 + 5545 5853 52225 17 1 0 48 2 0 69 1 0 13 1 0 48 2 1 16 5 4 52 0 1 39 chain 3414 chr1 248956422 + 210749505 210749604 MER5A1 166 + 38 127 95964 35 15 16 12 22 11 15 chain 3174 chr1 248956422 + 210758083 210758116 L1M2a1 1281 + 820 853 98161 33 chain 25365 chr1 248956422 + 210770014 210770370 L1PA8 5853 + 5507 5852 48676 57 1 0 46 2 0 56 1 0 12 2 1 8 2 1 4 1 0 8 2 0 38 7 6 16 1 0 92 chain 2915 chr1 248956422 + 210820963 210821026 MLT1D 503 + 432 496 100714 32 19 20 12 chain 124032 chr1 248956422 + 210833308 210834684 L1PA3long 6157 + 4770 6147 14841 1053 1 2 322 chain 71701 chr1 248956422 + 210837923 210838992 L1PA11 4918 + 3601 4578 23613 301 1 0 100 74 0 228 0 2 94 1 0 69 1 0 12 2 1 67 2 0 13 3 5 15 4 0 9 36 27 10 1 0 13 2 0 11 chain 264631 chr1 248956422 + 210844383 210847324 L1PA4 6152 + 2793 5735 7838 2506 1 2 434 chain 93249 chr1 248956422 + 210871023 210872061 L1PA3long 6157 + 5118 6156 19151 1038 chain 25139 chr1 248956422 + 210881394 210882030 L1MC1 2226 + 1609 2189 49060 64 90 68 103 16 17 28 6 0 28 1 0 56 24 19 47 31 24 23 63 49 13 5 4 32 1 0 5 chain 446906 chr1 248956422 + 210885126 210891547 L1PA6 6164 + 4 6162 4438 35 2 9 29 0 1 114 18 20 104 237 57 77 255 150 139 27 6 11 0 1 35 1 18 208 0 1 6 1 0 9 16 17 5 1 0 289 25 26 63 13 22 7 9 0 257 0 4 5 3 0 81 1 2 229 6 7 277 14 0 141 11 9 107 0 4 654 0 4 160 0 3 120 6 5 827 1 13 943 1 5 30 0 1 12 0 1 4 1 0 22 18 17 123 0 1 631 chain 54641 chr1 248956422 + 210891548 210892210 L1PA7 6471 + 5793 6457 27998 42 0 1 207 0 1 72 0 1 191 9 8 141 chain 381850 chr1 248956422 + 210926284 210931632 L1PB1 5432 + 18 5404 5456 15 4 6 110 23 24 128 0 7 7 8 0 85 0 1 4 1 0 197 1 0 71 3 4 281 12 0 7 24 44 396 6 14 13 0 1 277 1 0 7 10 11 205 0 3 80 11 4 363 16 29 53 0 1 19 0 17 10 3 0 67 0 1 7 0 5 221 3 5 88 0 1 483 1 0 90 0 2 250 2 0 319 12 8 144 0 1 20 2 3 158 1 0 220 0 4 17 2 0 113 0 12 13 6 10 29 3 4 296 16 12 23 8 6 14 5 1 9 2 0 51 1 0 18 1 0 45 1 0 14 1 0 4 2 0 9 7 0 15 25 20 26 1 0 19 0 2 13 chain 38930 chr1 248956422 + 210933089 210933523 L1PA3long 6157 + 5723 6157 35409 434 chain 8823 chr1 248956422 + 210933601 210933755 L1MA5 2750 + 25 170 72941 30 1 0 10 21 15 4 1 0 4 1 0 82 chain 63041 chr1 248956422 + 210957177 210965593 L1PA6 6164 + 3310 4359 25615 41 7233 0 223 0 1 271 7 8 23 0 2 89 10 9 136 1 0 188 0 2 6 8 6 30 136 0 14 chain 78963 chr1 248956422 + 210965599 210966537 L1PA6 6164 + 4370 5313 21882 273 1 0 651 0 6 13 chain 62518 chr1 248956422 + 210966538 210967325 L1PA6 6164 + 5324 6157 25747 124 0 3 302 1 2 80 1 0 12 0 43 267 chain 47564 chr1 248956422 + 210970476 210971116 L1PA8A 6298 + 5017 5654 30455 356 1 0 4 7 10 85 0 4 7 28 17 70 0 2 82 chain 61075 chr1 248956422 + 210976747 210977456 L1PA5 6144 + 5425 6144 26088 332 0 12 363 3 1 11 chain 339106 chr1 248956422 + 210996005 211000000 L1P1 4361 + 2 3970 6087 572 1 0 253 34 0 80 10 16 1194 4 5 722 1 0 1105 1 3 18 chain 176327 chr1 248956422 + 211000000 211001994 L1PA5 6144 + 3969 5966 10761 198 0 1 62 1 0 177 0 1 1402 0 1 41 0 1 113 chain 8286 chr1 248956422 + 211021016 211021128 L1PB1 5432 + 5167 5277 74196 53 2 1 15 1 0 41 chain 7380 chr1 248956422 + 211021162 211021291 L1PB1 5432 + 5297 5416 76444 30 3 0 5 1 0 14 2 0 24 1 0 22 1 0 12 3 1 11 chain 12199 chr1 248956422 + 211023267 211023499 L1MA5 2750 + 2393 2631 66475 65 9 22 81 52 45 25 chain 249267 chr1 248956422 + 211031094 211033914 L1PA4 6152 + 3339 6141 8258 447 17 0 1313 0 1 430 2 0 611 chain 21952 chr1 248956422 + 211037762 211038409 THE1A 353 + 0 353 53900 74 0 1 8 20 21 6 1 0 77 313 0 25 1 19 122 chain 128351 chr1 248956422 + 211038409 211040278 THE1A-int 1579 + 0 1572 14239 440 0 2 29 0 4 510 4 6 87 0 3 425 309 1 65 chain 22658 chr1 248956422 + 211040285 211040631 THE1A 353 + 0 353 52890 20 4 5 38 2 5 10 26 33 51 3 0 56 1 0 135 chain 218088 chr1 248956422 + 211042458 211045404 L1PB1 5432 + 1804 5420 9090 267 1 0 158 31 40 53 5 6 47 0 3 117 6 8 153 1 0 186 1 0 47 0 15 425 1 0 123 0 1 259 3 686 201 3 4 26 3 1 175 2 10 199 8 6 47 0 1 26 14 9 14 0 1 7 10 0 9 1 0 4 1 0 8 1 0 12 5 1 10 2 0 51 2 1 16 1 0 40 44 31 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 4627 chr1 248956422 + 211047992 211048049 L1PB1 5432 + 4623 4680 87661 57 chain 49912 chr1 248956422 + 211048049 211048840 L1PB1 5432 + 4682 5430 29599 421 1 0 13 13 0 22 1 0 4 22 17 9 3 1 51 2 1 16 1 0 45 1 0 13 3 0 7 12 6 15 12 9 14 2 0 18 1 2 4 1 0 22 1 0 12 1 0 18 1 0 4 1 0 4 chain 520696 chr1 248956422 + 211075612 211081965 L1PA6 6164 + 1 6153 2237 448 17 16 102 1 0 187 0 1 4 9 8 475 0 1 411 0 2 11 8 9 136 1 0 518 9 0 7 0 1 27 1 0 410 0 1 374 196 0 35 1 0 4 0 1 110 1 0 1378 0 1 273 0 1 788 1 0 163 0 1 112 0 1 135 chain 4256 chr1 248956422 + 211100799 211100850 MER5A1 166 + 0 51 89784 51 chain 30920 chr1 248956422 + 211115320 211115700 MLT2A1 477 + 0 385 41201 142 0 1 26 1 5 211 chain 159900 chr1 248956422 + 211120728 211122935 L1PA8A 6298 + 4375 6290 11763 275 0 3 533 6 5 294 1 0 14 295 0 81 0 1 602 0 1 106 chain 25480 chr1 248956422 + 211148773 211149070 AluY 311 + 7 302 48510 126 3 1 168 chain 61529 chr1 248956422 + 211197339 211198013 SVA_C 1631 + 950 1625 25976 45 8 9 621 chain 59998 chr1 248956422 + 211221084 211221772 LTR12_ 688 + 0 688 26373 688 chain 54674 chr1 248956422 + 211228845 211229509 LTR12_ 688 + 0 688 27983 117 4 29 21 2 1 520 chain 11956 chr1 248956422 + 211237069 211237298 Tigger3b 1229 + 63 290 66911 31 31 32 39 4 3 12 5 0 69 3 6 35 chain 17656 chr1 248956422 + 211242402 211242605 L1PA6 6164 + 5853 6058 59060 162 0 2 41 chain 7687 chr1 248956422 + 211242606 211242709 L1PA6 6164 + 6060 6160 75654 94 3 0 6 chain 15316 chr1 248956422 + 211291271 211291494 Tigger4a 237 + 0 237 61890 28 2 9 128 0 11 7 4 1 42 1 0 11 chain 37390 chr1 248956422 + 211398719 211399285 MER11C 1089 + 487 1059 36482 47 66 65 91 1 5 4 1 0 38 0 1 127 0 1 52 1 0 75 0 2 42 0 1 21 chain 41575 chr1 248956422 + 211450839 211453385 L1MA1 4479 + 652 2388 9764 20 0 3 304 0 1 6 50 12 90 12 13 39 10 11 116 0 1 354 0 1 64 1 11 174 0 1 15 0 2 30 0 1 33 965 172 36 4 0 7 1 2 4 1 0 11 0 4 65 6 5 128 chain 534981 chr1 248956422 + 211453401 211459501 L1PA5 6144 + 3 6135 1620 156 28 37 791 0 5 21 1 0 58 2 0 5 0 2 443 1 2 4 1 0 667 0 2 1308 0 16 900 1 0 322 0 1 1197 0 1 194 chain 144829 chr1 248956422 + 211459829 211461479 SVA_D 2077 + 137 2056 12704 759 1 5 21 0 39 25 1 0 17 0 51 49 0 78 148 0 98 629 chain 23955 chr1 248956422 + 211461513 211462980 L1MA1 4479 + 2684 4139 9764 87 2 0 33 1 0 44 0 1 23 1 0 20 0 5 61 1 0 27 2 0 76 4 3 59 1 2 41 11 7 78 1 0 12 4 0 126 4 0 64 0 9 58 1 0 194 3 0 5 0 2 5 0 7 6 2 0 16 1 0 71 1 0 9 4 1 10 2 0 6 8 7 88 1 0 5 3 0 115 10 14 26 2 0 32 chain 29418 chr1 248956422 + 211466590 211466942 THE1A 353 + 0 351 42711 111 1 0 240 chain 91004 chr1 248956422 + 211550191 211551455 HSMAR1 1287 + 9 1285 19503 107 5 9 180 4 0 59 8 9 182 0 1 105 15 18 73 7 10 34 0 1 113 5 7 185 9 8 125 0 3 22 8 7 18 chain 52593 chr1 248956422 + 211625774 211626489 L1PA3long 6157 + 5562 6152 28704 261 0 1 135 126 0 193 chain 35519 chr1 248956422 + 211687054 211687501 LTR2 463 + 0 463 37711 124 0 11 33 0 4 187 15 16 88 chain 429656 chr1 248956422 + 211689037 211694119 Harlequin-int 5206 + 125 5206 4751 244 3 1 104 3 0 8 2 0 525 1 0 166 18 1 118 3 2 204 4 5 360 0 1 186 0 2 439 0 2 66 0 4 195 1 2 75 0 8 110 4 3 586 0 2 132 4 0 1101 0 8 317 0 1 103 chain 36806 chr1 248956422 + 211694119 211694581 LTR2 463 + 0 463 36879 362 12 13 88 chain 8717 chr1 248956422 + 211703337 211703539 MLT1C 463 + 0 201 73172 40 34 33 30 3 4 17 17 10 46 2 8 13 chain 42029 chr1 248956422 + 211706725 211707258 MER41A 554 + 1 535 33341 133 0 1 42 1 0 4 36 37 317 chain 9054 chr1 248956422 + 211710073 211710701 MER41-int 2638 + 134 2636 72439 36 336 10 31 36 0 7 30 41 30 40 2265 82 chain 41820 chr1 248956422 + 211710723 211711267 MER41A 554 + 13 554 33472 164 1 0 4 7 8 74 8 5 286 chain 20297 chr1 248956422 + 211719532 211719890 THE1B 368 + 6 368 56017 105 0 3 6 2 0 57 69 73 56 7 6 56 chain 42137 chr1 248956422 + 211777742 211778603 MER41A 554 + 13 554 33283 308 327 2 146 1 6 79 chain 23356 chr1 248956422 + 211808078 211808366 AluSp 311 + 15 298 51846 194 14 9 80 chain 20264 chr1 248956422 + 211834783 211835007 L1PA4 6152 + 5914 6138 56060 224 chain 93331 chr1 248956422 + 211857873 211858921 HERV17-int 4347 + 1168 2217 19141 177 2 1 130 0 1 127 0 1 612 chain 10243 chr1 248956422 + 211889876 211890183 LTR12C 1709 + 769 1038 69914 47 119 0 21 1 0 18 13 54 55 14 55 19 chain 4953 chr1 248956422 + 211889923 211890030 LTR12C 1709 + 975 1086 73339 27 45 49 35 chain 4574 chr1 248956422 + 211902195 211902293 MER52A 1651 + 789 920 87950 19 5 0 29 21 59 24 chain 3370 chr1 248956422 + 212001489 212001542 MER2 342 + 147 201 96392 12 6 7 35 chain 99802 chr1 248956422 + 212014542 212015723 SVA_B 1603 + 0 1603 18319 21 9 27 117 1 3 245 6 287 152 1 0 10 1 0 21 0 38 26 6 91 565 chain 4141 chr1 248956422 + 212024526 212024687 L1ME1 1623 + 1328 1484 90505 26 83 84 8 6 0 38 chain 61444 chr1 248956422 + 212135727 212136964 L1MA3 4352 + 2346 3259 26001 166 5 0 73 1 0 4 0 1 84 14 6 140 0 3 147 0 1 4 1 0 54 27 30 30 322 0 90 10 14 38 11 12 16 chain 6240 chr1 248956422 + 212245835 212245911 L1MB5 1630 + 1397 1473 80205 76 chain 16748 chr1 248956422 + 212292916 212293116 MER107 203 + 0 203 60098 162 0 3 38 chain 22358 chr1 248956422 + 212304293 212304566 AluSp 311 + 25 294 53334 116 0 1 145 5 0 7 chain 541504 chr1 248956422 + 212390465 212396588 L1PA5 6144 + 3 6138 1237 1030 1 0 400 15 14 361 0 2 365 0 2 16 0 4 1653 1 2 98 0 1 1343 0 1 705 1 2 95 0 2 39 chain 8254 chr1 248956422 + 212516901 212517043 MER20 218 + 22 149 74277 10 15 0 42 6 5 8 0 1 61 chain 30100 chr1 248956422 + 212533237 212533629 MER51B 395 + 0 395 41947 245 1 0 88 1 5 57 chain 49572 chr1 248956422 + 212592876 212593439 L1PA4 6152 + 5578 6140 29742 240 1 0 322 chain 543289 chr1 248956422 + 212658025 212664178 L1PA4 6152 + 6 6143 1120 322 0 3 197 4 0 628 0 3 785 0 2 291 19 0 276 6 0 658 1 0 607 0 1 1525 0 4 220 0 2 288 1 0 325 chain 13403 chr1 248956422 + 212670237 212670437 MER2 342 + 85 289 64463 13 8 11 122 9 10 48 chain 21632 chr1 248956422 + 212707382 212707675 AluSp 311 + 11 302 54309 46 11 8 193 1 2 42 chain 24647 chr1 248956422 + 212720279 212720561 AluSp 311 + 11 292 49796 32 1 0 249 chain 136869 chr1 248956422 + 212724206 212725775 SVA_B 1603 + 0 1603 13350 8 9 0 14 3 1 19 12 5 687 0 19 89 0 36 43 4 0 26 0 1 655 chain 244450 chr1 248956422 + 212763321 212768037 L1PB2 3958 + 115 3671 8368 23 2 0 37 16 9 46 3 0 69 1 5 111 0 3 48 0 1 191 0 3 362 0 3 105 0 4 71 1 6 38 11 0 88 0 5 26 320 6 192 13 12 18 1 0 194 0 1 192 3 1 5 0 2 31 1135 295 132 7 1 31 9 0 8 0 1 98 1 0 335 1 0 59 0 22 304 2 0 52 1 0 13 5 0 51 1 2 11 2 0 13 5 0 94 1 0 73 1 0 53 chain 170897 chr1 248956422 + 212778425 212780515 SVA_D 2077 + 61 2074 11056 606 0 37 164 11 10 30 6 0 9 2 0 30 9 0 57 0 51 196 98 0 137 0 1 4 58 8 673 chain 8011 chr1 248956422 + 212779545 212779643 SVA_D 2077 + 1378 1476 33349 10 0 1 4 0 1 4 11 9 69 chain 3050 chr1 248956422 + 212779784 212779842 SVA_D 2077 + 989 1049 45906 47 0 2 11 chain 11629 chr1 248956422 + 212843810 212843951 HERVH-int 3825 + 2672 2820 67518 121 0 7 20 chain 25831 chr1 248956422 + 212846382 212846806 LTR7B 505 + 0 505 47973 105 0 10 56 18 86 32 45 8 14 0 41 89 14 13 51 chain 30277 chr1 248956422 + 212851447 212851771 L1PA2 6032 + 5707 6031 41785 324 chain 6577 chr1 248956422 + 212894116 212894204 Tigger1 2417 + 2251 2338 79047 28 2 0 33 0 1 25 chain 5187 chr1 248956422 + 212901457 212901596 L1M3c 1411 + 1133 1258 84739 16 16 6 32 11 12 20 3 0 12 9 7 20 chain 40020 chr1 248956422 + 212910007 212910445 LTR7 482 + 0 469 34643 260 0 31 178 chain 222527 chr1 248956422 + 212910474 212913191 HERVH-int 3825 + 459 3474 8969 16 0 57 38 1 0 10 1 0 24 29 0 12 3 40 42 2 1 57 0 1 6 0 2 13 0 3 442 15 0 462 4 31 390 0 2 50 0 4 73 1 0 857 0 3 25 37 247 107 chain 44550 chr1 248956422 + 212914199 212914681 LTR7 482 + 0 482 31804 482 chain 29185 chr1 248956422 + 213160632 213161005 L1PA6 6164 + 5790 6162 43073 6 3 0 81 0 1 164 9 10 110 chain 99752 chr1 248956422 + 213198907 213200302 L1PA13 3608 + 2142 3518 18326 96 9 0 44 0 1 179 1 2 118 6 2 27 1 0 102 0 1 201 0 4 24 3 10 175 1 0 32 1 0 114 2 0 35 0 2 25 1 0 56 7 4 47 9 5 17 1 0 27 20 12 14 chain 462684 chr1 248956422 + 213213900 213219218 L1PA4 6152 + 10 5350 4059 895 1 0 139 5 4 1121 0 1 214 0 4 40 0 3 1680 16 15 224 1 5 632 3 7 83 0 5 217 3 7 44 chain 18076 chr1 248956422 + 213236010 213236268 MER1B 344 + 95 344 58584 164 37 28 57 chain 28473 chr1 248956422 + 213271483 213271783 AluYg6 310 + 0 300 44168 300 chain 11664 chr1 248956422 + 213290040 213290168 AluYk11 308 + 177 305 67457 128 chain 20584 chr1 248956422 + 213292027 213292260 L1PA3long 6157 + 5924 6157 55666 233 chain 28483 chr1 248956422 + 213303923 213304229 AluYa5 310 + 0 305 44151 132 1 0 173 chain 13750 chr1 248956422 + 213343447 213343785 L1PB1 5432 + 5114 5422 63947 24 1 0 4 3 2 14 4 0 10 2 0 37 1 2 5 1 0 6 2 1 18 1 0 42 1 0 13 75 59 19 1 0 20 2 1 13 1 0 18 chain 6171 chr1 248956422 + 213409211 213409291 MADE1 96 + 0 96 80446 29 0 16 51 chain 158032 chr1 248956422 + 213460998 213462908 L1PA7 6471 + 4519 6467 11875 6 0 1 90 0 1 50 0 4 313 0 3 237 0 4 79 0 5 37 0 1 268 0 7 50 0 3 9 5 7 261 0 1 30 1 4 228 9 13 101 1 0 135 chain 26927 chr1 248956422 + 213575388 213575714 THE1C 375 + 0 364 46367 53 0 42 30 3 0 225 1 0 14 chain 103489 chr1 248956422 + 213577445 213578951 THE1B-int 1605 + 45 1605 17883 129 0 24 63 0 25 119 0 3 5 10 7 10 38 21 47 6 16 133 21 29 30 3 6 5 3 0 27 4 13 465 15 25 52 3 0 100 4 5 135 13 0 66 chain 18131 chr1 248956422 + 213583943 213584310 THE1B 368 + 0 368 58531 107 106 107 14 6 14 41 7 0 25 1 0 60 chain 382238 chr1 248956422 + 213632287 213636800 L1P2 5180 + 2 5178 5444 86 0 729 1235 0 1 266 31 0 852 43 0 121 0 1 519 0 4 447 0 1 463 0 4 64 1 0 75 1 2 219 1 0 45 1 0 38 1 0 4 chain 11633 chr1 248956422 + 213637426 213637575 L1PA6 6164 + 6015 6162 67506 141 2 0 6 chain 35374 chr1 248956422 + 213923021 213923403 L1PA2 6032 + 5469 5851 37786 382 chain 27112 chr1 248956422 + 213926909 213927284 L1PA8 5853 + 5483 5853 46108 81 1 0 44 2 0 68 0 1 5 18 16 25 0 1 16 2 1 19 1 0 93 chain 4097 chr1 248956422 + 214046357 214046402 MER30 238 + 193 238 90799 45 chain 41121 chr1 248956422 + 214047542 214048051 L1PA10 4194 + 3662 4161 33899 337 6 0 117 3 0 34 1 0 11 chain 4945 chr1 248956422 + 214084608 214084662 MLT2A2 560 + 506 560 85912 54 chain 8726 chr1 248956422 + 214112642 214112778 MER33 330 + 147 286 73160 11 2 0 53 1 3 27 4 0 7 0 7 31 chain 29757 chr1 248956422 + 214159670 214160105 MER4A1 472 + 0 437 42295 22 1 2 48 2 3 160 22 1 11 0 21 62 6 7 4 1 0 96 chain 96633 chr1 248956422 + 214297879 214299610 L1PA16 3655 + 2070 3517 18699 116 6 5 48 1 0 139 0 1 70 12 21 7 9 0 169 1 4 25 1 0 12 4 5 26 0 6 13 0 1 130 17 21 14 1 0 14 1 0 10 0 25 28 0 2 108 315 0 111 1 0 89 3 1 82 16 8 97 8 12 27 chain 35247 chr1 248956422 + 214379539 214379989 MER4A1 472 + 0 472 37867 15 0 2 7 0 2 46 0 1 95 0 2 104 7 22 176 chain 30348 chr1 248956422 + 214435544 214436114 L1PA15 4387 + 3812 4365 41715 15 4 0 36 1 5 22 2 0 43 1 0 29 18 14 38 1 19 46 9 0 25 1 0 27 2 1 53 8 7 20 10 5 42 14 11 44 3 1 13 6 1 27 1 0 9 chain 29636 chr1 248956422 + 214509652 214509986 L1PA6 6164 + 5669 6003 42446 334 chain 12758 chr1 248956422 + 214523403 214523554 Tigger3a 397 + 158 309 65505 151 chain 18957 chr1 248956422 + 214576022 214576370 THE1A 353 + 7 353 57587 6 2 0 34 9 10 24 14 13 13 41 45 58 6 0 23 0 1 28 0 1 90 chain 23258 chr1 248956422 + 214577906 214578261 THE1A 353 + 0 353 51988 12 3 1 34 7 8 41 33 32 225 chain 12153 chr1 248956422 + 214584766 214584922 Tigger2b_Pri 1066 + 844 999 66566 7 0 2 20 3 0 126 chain 23140 chr1 248956422 + 214595924 214596232 AluYk4 311 + 11 307 52159 113 33 19 136 0 2 26 chain 17415 chr1 248956422 + 214623224 214623483 MER2 342 + 87 342 59334 22 1 0 7 1 0 22 1 0 4 13 12 188 chain 48154 chr1 248956422 + 214667341 214668060 L1PA16 3655 + 2914 3619 30237 8 1 0 4 0 7 49 0 2 95 14 16 107 3 0 88 2 0 191 6 12 86 3 0 14 27 5 21 chain 71269 chr1 248956422 + 214675209 214676027 L1PA5 6144 + 5303 6124 23708 139 2 1 553 0 4 124 chain 10580 chr1 248956422 + 214698587 214698916 Tigger1 2417 + 2037 2374 69263 35 7 6 33 3 0 5 5 8 62 144 153 35 chain 19411 chr1 248956422 + 214707155 214707474 THE1C 375 + 2 350 57120 118 3 0 43 28 34 42 6 0 8 9 41 62 chain 299937 chr1 248956422 + 214781766 214785296 L1PA6 6164 + 2615 6147 6831 554 2 0 662 4 0 129 0 1 328 0 4 410 0 1 190 3 4 263 8 0 157 0 4 166 1 0 291 0 7 223 8 7 131 chain 15274 chr1 248956422 + 214817684 214817902 MER30 238 + 0 231 61948 102 2 0 5 4 0 7 2 24 61 3 0 32 chain 69615 chr1 248956422 + 214891988 214893086 L1MA1 4479 + 3143 4190 24093 13 2 0 19 4 0 76 1 0 14 4 0 124 3 0 81 5 10 39 2 0 195 1 0 25 2 0 16 1 0 11 0 1 42 34 31 19 1 0 70 1 0 16 2 1 6 3 0 43 2 0 66 0 1 7 24 11 26 3 1 35 1 0 9 0 1 6 7 2 12 7 0 18 chain 15532 chr1 248956422 + 214931346 214931527 L1P1 4361 + 4046 4226 61611 105 2 1 74 chain 116640 chr1 248956422 + 214984059 214985916 THE1A-int 1579 + 0 1574 16114 130 2 1 220 0 1 150 1 0 148 0 3 27 0 10 169 1 2 33 0 10 139 6 7 42 11 19 169 0 1 116 0 1 69 0 1 36 330 12 58 chain 24810 chr1 248956422 + 215065972 215066271 L1PA7 6471 + 6167 6466 49578 299 chain 18355 chr1 248956422 + 215125535 215125739 L1PA5 6144 + 5931 6135 58293 204 chain 73486 chr1 248956422 + 215167876 215168867 L1PA8 5853 + 4850 5853 23223 103 0 2 51 7 12 177 0 9 116 4 5 239 1 0 46 2 0 68 17 13 6 0 4 39 2 1 19 1 0 93 chain 45693 chr1 248956422 + 215301770 215302339 L1PA7 6471 + 5897 6468 31211 62 2 0 5 0 2 10 2 0 132 1 2 21 0 1 321 0 2 13 chain 40637 chr1 248956422 + 215481382 215481873 MER9a1 513 + 0 513 34195 18 0 1 4 1 0 221 1 23 246 chain 115954 chr1 248956422 + 215491877 215493384 THE1B-int 1605 + 62 1605 16244 294 0 1 73 0 25 226 0 1 80 4 5 11 11 6 190 5 6 50 0 15 364 6 0 84 1 3 98 1 2 9 chain 25732 chr1 248956422 + 215493384 215493740 THE1B 368 + 0 368 48121 44 0 15 110 1 0 17 7 6 94 8 7 75 chain 36259 chr1 248956422 + 215509963 215510430 L1PA7 6471 + 5998 6467 37236 12 0 2 143 0 1 98 5 6 166 0 1 30 3 0 10 chain 514909 chr1 248956422 + 215532201 215538357 L1PA5 6144 + 4 6132 2523 125 0 14 107 43 6 914 9 0 671 0 1 40 0 1 373 2 0 58 0 1 776 0 4 69 2 0 12 1 0 26 1 0 473 2 0 67 7 8 817 0 1 59 0 1 82 5 7 577 1 0 617 5 6 36 9 9 170 chain 13100 chr1 248956422 + 215565816 215566022 MER30 238 + 0 235 64928 15 15 14 57 14 44 105 chain 6440 chr1 248956422 + 215616786 215616927 MER21B 843 + 0 171 79543 46 40 38 35 1 33 19 chain 19863 chr1 248956422 + 215667446 215667726 AluSg7 307 + 30 298 56591 102 13 11 29 0 1 114 11 0 11 chain 92247 chr1 248956422 + 215752796 215753813 L1PA4 6152 + 5126 6143 19305 1017 chain 207245 chr1 248956422 + 215802974 215805286 L1PA4 6152 + 3830 6143 9452 1470 0 1 842 chain 249190 chr1 248956422 + 215850578 215857174 L1PB1 5432 + 1849 5392 8259 398 0 1 250 7 0 20 9 10 35 1 0 151 0 9 283 0 1 346 0 3 21 2301 0 66 651 10 71 0 7 3 7 0 38 18 0 160 2 0 93 0 4 80 41 0 53 0 2 77 5 0 6 6 11 489 9 0 7 0 9 63 3 0 57 16 4 26 0 1 145 0 2 140 0 1 92 107 76 50 2 1 16 1 0 44 1 0 11 17 6 10 4 3 13 2 0 8 1 0 14 2 0 22 2 1 23 chain 28371 chr1 248956422 + 215862254 215862576 L1PA5 6144 + 5824 6142 44311 311 4 0 7 chain 21826 chr1 248956422 + 215883923 215884234 L1PA8 5853 + 5564 5853 54072 44 18 0 70 2 1 9 2 1 51 2 1 24 1 0 88 chain 53636 chr1 248956422 + 215915600 215916197 L1PA3long 6157 + 5560 6157 28353 597 chain 108138 chr1 248956422 + 215952886 215954090 L1PA4 6152 + 4311 5517 17303 354 1 0 125 1 3 151 0 1 572 chain 20164 chr1 248956422 + 216006908 216007259 THE1B 368 + 0 357 56175 111 0 3 6 4 3 43 51 48 18 0 8 66 16 15 36 chain 31489 chr1 248956422 + 216008142 216008553 LTR7 482 + 0 482 40742 69 8 46 109 0 1 33 6 38 186 chain 277484 chr1 248956422 + 216008555 216012204 HERVH-int 3825 + 0 3824 7505 212 0 11 117 0 1 53 0 121 15 1 0 11 1 0 4 0 1 24 2 1 9 1 0 10 4 0 6 14 8 15 1 0 11 25 22 4 1 0 27 2 0 15 2 1 18 13 13 49 1 0 58 0 3 334 8 0 52 15 0 266 6 7 186 4 31 295 0 10 911 5 8 130 9 11 39 8 218 120 0 1 139 0 2 158 172 0 66 chain 30502 chr1 248956422 + 216013458 216013861 LTR7 482 + 0 474 41566 69 8 46 109 0 1 33 6 38 178 chain 24927 chr1 248956422 + 216067106 216067426 L1PA7 6471 + 6155 6470 49387 154 18 13 148 chain 40610 chr1 248956422 + 216145600 216146051 LTR7 482 + 0 482 34215 247 1 32 203 chain 255074 chr1 248956422 + 216146053 216149090 HERVH-int 3825 + 0 3120 8111 157 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216469686 216469917 L1PA2 6032 + 5799 6031 56049 9 0 1 222 chain 8571 chr1 248956422 + 216480765 216480886 MER41E 591 + 399 508 73516 5 2 0 20 10 0 84 chain 174304 chr1 248956422 + 216485645 216487584 L1HS 6032 + 6 1944 10780 251 1 0 1687 chain 367606 chr1 248956422 + 216487584 216491614 L1PA2 6032 + 1944 6032 5700 29 0 58 160 1 0 3605 0 1 235 chain 3274 chr1 248956422 + 216562567 216562601 MER20 218 + 86 120 97234 34 chain 12661 chr1 248956422 + 216589300 216589484 MER30 238 + 41 238 65700 59 3 0 5 11 27 106 chain 9981 chr1 248956422 + 216591645 216591829 L1MC4 1079 + 125 305 70462 8 2 0 18 1 0 11 35 34 109 chain 8635 chr1 248956422 + 216665413 216665522 L1MB2 1706 + 1449 1558 73381 109 chain 27541 chr1 248956422 + 216691869 216692307 Tigger3b 1229 + 67 517 45528 27 9 26 108 8 9 41 0 5 12 2 0 40 19 9 83 6 7 83 chain 61149 chr1 248956422 + 216708473 216709224 L1PA7 6471 + 5719 6467 26074 24 7 1 6 0 6 375 1 0 328 2 0 8 chain 49468 chr1 248956422 + 216762160 216762705 L1PA3long 6157 + 5602 6147 29779 545 chain 44522 chr1 248956422 + 216874630 216875180 MLT2A2 560 + 0 552 31817 149 0 1 53 0 1 348 chain 23882 chr1 248956422 + 216973556 216973842 AluSp 311 + 12 298 50972 286 chain 32657 chr1 248956422 + 217068984 217069494 MLT2A1 477 + 0 477 39797 169 4 1 215 6 0 8 47 27 17 8 0 30 0 4 6 chain 153153 chr1 248956422 + 217256808 217258507 L1PA4 6152 + 4175 5879 12168 182 1 3 92 0 3 1424 chain 127771 chr1 248956422 + 217357555 217360113 L1PA3long 6157 + 3557 6155 14312 739 0 34 27 0 4 815 0 1 902 0 1 75 chain 6532 chr1 248956422 + 217370268 217370366 MADE1 96 + 6 96 79224 40 9 0 17 0 1 32 chain 3664 chr1 248956422 + 217370366 217370421 MLT1B 390 + 236 291 93881 35 0 3 5 3 0 12 chain 520345 chr1 248956422 + 217379371 217385828 L1PA7 6471 + 3 6459 2259 90 3 0 110 5 7 107 8 9 85 0 1 107 1 2 178 10 7 45 0 3 214 0 3 131 7 8 199 0 1 140 0 19 843 5 6 37 46 0 283 1 2 25 2 0 479 0 5 205 0 1 101 5 1 42 1 0 50 0 4 447 4 2 33 10 13 221 3 0 185 1 0 870 0 2 288 0 3 123 0 1 499 5 16 203 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24040 chr1 248956422 + 217726969 217727247 AluSp 311 + 4 282 50745 278 chain 28918 chr1 248956422 + 217744180 217744488 AluYa5 310 + 0 307 43457 132 1 0 175 chain 24094 chr1 248956422 + 217808582 217808868 AluSc 308 + 11 294 50653 125 3 0 158 chain 9445 chr1 248956422 + 217827235 217827358 L1MA9 1812 + 486 609 71613 123 chain 8240 chr1 248956422 + 217900876 217900980 MER44A 345 + 135 239 74307 104 chain 23526 chr1 248956422 + 217912572 217912921 THE1D 372 + 5 357 51542 106 0 1 57 22 25 110 0 2 5 7 5 24 1 0 17 chain 8203 chr1 248956422 + 217935314 217935491 MLT1C 463 + 8 186 74410 17 27 29 65 23 24 20 2 0 23 chain 8408 chr1 248956422 + 217936547 217936810 L1MA8 2339 + 2026 2265 73881 51 59 43 27 17 13 36 6 0 6 28 31 24 1 0 8 chain 3968 chr1 248956422 + 217947365 217947414 L1MC3 1789 + 1262 1311 91651 49 chain 14385 chr1 248956422 + 217965676 217965850 L1PA15 4387 + 3446 3620 63060 174 chain 195317 chr1 248956422 + 218019287 218023192 MER4-int 2692 + 1 2669 9871 10 1 0 25 2 0 63 1 0 7 8 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2 0 17 3 0 12 42 34 27 chain 11390 chr1 248956422 + 218653351 218653489 L1P3 4156 + 371 509 67933 138 chain 21400 chr1 248956422 + 218667384 218667630 AluYk4 311 + 52 298 54633 246 chain 139677 chr1 248956422 + 218820965 218822686 L1P1 4361 + 2554 4286 13121 1334 0 10 252 1 0 5 0 1 57 0 1 72 chain 64643 chr1 248956422 + 218846266 218847060 L1PA7 6471 + 5681 6470 25284 28 5 6 421 0 1 327 7 0 6 chain 21437 chr1 248956422 + 218941298 218941664 THE1B 368 + 0 368 54597 13 2 0 51 62 62 46 1 0 125 2 0 9 4 11 51 chain 23437 chr1 248956422 + 218973738 218974116 THE1D 372 + 0 372 51698 55 33 24 96 1 0 16 5 0 7 5 9 27 1 7 99 1 0 32 chain 120616 chr1 248956422 + 219070745 219072323 THE1B-int 1605 + 0 1605 15431 412 1 2 4 1 0 12 1 26 163 19 20 13 0 1 366 2 0 7 17 19 560 chain 25778 chr1 248956422 + 219096422 219096800 THE1B-int 1605 + 35 420 48057 23 8 16 227 27 26 93 chain 72536 chr1 248956422 + 219113334 219114572 L1PA13 3608 + 185 1280 23424 17 137 16 49 26 24 124 1 0 4 0 2 5 24 19 16 25 20 8 4 0 11 3 1 15 2 0 13 1 0 39 0 1 58 1 0 3 2 0 296 4 0 207 1 2 25 4 7 113 chain 119234 chr1 248956422 + 219114821 219116117 L1PA3long 6157 + 4860 6156 15651 1296 chain 51126 chr1 248956422 + 219196505 219197207 L1PA10 4194 + 3444 4161 29188 168 7 5 26 9 9 218 10 26 198 0 5 17 3 0 34 2 1 10 chain 4168 chr1 248956422 + 219242209 219242279 MLT1J2-int 891 + 319 387 90334 37 1 0 6 9 8 17 chain 108184 chr1 248956422 + 219307967 219309452 THE1A-int 1579 + 113 1568 17294 164 4 5 308 4 5 258 0 1 5 1 0 233 0 2 5 35 33 87 0 1 85 24 11 11 18 0 46 2 0 195 chain 22495 chr1 248956422 + 219352248 219352516 AluYc 301 + 0 271 53127 120 0 2 127 8 9 13 chain 29257 chr1 248956422 + 219367028 219367487 MER75 514 + 0 448 42952 138 8 0 62 20 15 47 34 36 150 chain 120794 chr1 248956422 + 219410469 219411912 LTR12C 1709 + 0 1709 15378 76 0 1 232 0 1 4 1 0 523 1 0 75 0 162 37 1 0 5 3 1 107 0 4 43 1 0 74 0 2 49 0 102 211 chain 232047 chr1 248956422 + 219455572 219458069 L1PA2 6032 + 3533 6030 8691 2497 chain 159255 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248956422 + 219762527 219763180 L1PA8 5853 + 5205 5853 28732 340 0 1 18 1 0 17 1 5 22 2 0 71 1 0 9 3 0 6 1 0 46 2 1 22 1 0 90 chain 316736 chr1 248956422 + 219765591 219769876 L1PB1 5432 + 1186 5424 6473 203 32 10 113 11 6 35 0 6 37 0 6 127 0 2 211 10 4 84 0 6 152 0 4 202 0 1 104 1 0 343 2 0 125 7 15 218 3 6 35 0 1 79 0 1 253 2 5 119 0 1 35 7 0 176 24 20 407 0 1 287 3 0 87 7 8 382 5 6 5 3 0 24 1 0 9 16 11 9 2 0 53 2 1 9 8 7 43 1 0 16 1 0 4 2 0 13 46 33 24 1 0 21 9 0 13 1 0 16 1 0 4 chain 16497 chr1 248956422 + 219774665 219774880 THE1C 375 + 1 218 60380 12 2 0 104 1 5 96 chain 53503 chr1 248956422 + 219776715 219777305 L1PA3long 6157 + 3726 4317 28397 220 0 1 370 chain 4783 chr1 248956422 + 219780613 219780672 MLT1I 406 + 83 142 86776 59 chain 73124 chr1 248956422 + 219831639 219832485 L1PA7 6471 + 5341 6185 23292 199 2 0 81 1 0 298 0 1 265 chain 556835 chr1 248956422 + 219839339 219845507 L1PA3long 6157 + 7 6157 308 474 0 1 1674 1 0 1962 1 0 937 10 0 309 7 0 793 chain 263108 chr1 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473 0 7 141 chain 46013 chr1 248956422 + 220169891 220170425 L1PA7 6471 + 5932 6468 31056 206 0 1 117 0 1 211 chain 23812 chr1 248956422 + 220218461 220218751 L1PA5 6144 + 5856 6144 51080 276 3 1 11 chain 19937 chr1 248956422 + 220220596 220220952 THE1B 368 + 0 368 56470 105 51 54 9 1 0 30 35 45 125 chain 76669 chr1 248956422 + 220245155 220246003 L1HS 6032 + 1 849 22279 848 chain 82418 chr1 248956422 + 220246003 220246909 L1PA2 6032 + 5096 6025 21146 229 2 7 68 0 1 594 0 17 13 chain 30693 chr1 248956422 + 220246924 220247390 L1PB2 3958 + 3368 3838 41389 7 0 12 52 2 0 9 2 0 8 1 0 75 10 9 78 1 0 61 2 1 29 0 1 65 7 6 57 chain 326493 chr1 248956422 + 220255261 220260172 L1PA11 4918 + 8 4578 6275 7 1 0 26 7 5 5 0 1 26 2 0 5 3 2 22 0 7 6 6 1 7 2 0 53 1 0 25 17 14 248 8 7 27 0 1 4 1 0 84 1 3 92 5 5 122 13 38 62 0 5 6 13 8 307 8 23 7 0 1 20 0 2 59 1 0 40 13 0 195 1 2 12 0 4 205 1 5 42 334 0 239 7 6 113 2 0 180 26 12 108 0 6 24 2 0 113 0 4 256 1 0 303 0 1 129 6 5 15 14 19 118 0 3 156 4 1 112 0 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34 14 14 15 55 5 6 123 1 4 30 4 5 31 0 11 55 1 3 102 0 12 150 1 4 192 0 3 41 7 10 188 9 8 106 0 2 316 14 0 71 0 1 183 1 5 234 1 2 94 0 3 67 0 1 5 0 1 19 0 1 16 1 5 38 37 39 126 0 2 230 8 12 7 0 6 259 0 7 29 32 22 57 1 0 401 0 1 22 11 13 63 0 1 70 1 0 34 3 0 27 chain 4658 chr1 248956422 + 220704159 220704215 MER41D 557 + 0 56 87490 56 chain 16247 chr1 248956422 + 220708488 220708715 L1PA8 5853 + 5625 5847 60688 51 4 3 61 2 1 19 1 0 57 2 0 30 chain 97222 chr1 248956422 + 220716060 220717322 MER4-int 2692 + 1356 2689 18631 31 5 21 57 3 4 247 0 1 37 0 1 134 1 0 30 3 0 37 7 11 34 2 0 123 2 0 140 3 0 16 6 0 45 0 1 87 0 54 97 0 10 115 chain 205527 chr1 248956422 + 220720197 220722719 Harlequin-int 5206 + 127 3426 9519 20 1 0 11 3 4 131 1 2 11 0 1 32 7 6 11 4 9 14 1 0 106 3 0 401 0 778 597 3 1 1036 0 1 5 1 0 77 4 3 42 chain 13396 chr1 248956422 + 220771737 220771919 L1PA8 5853 + 5675 5853 64481 4 1 0 9 1 0 52 2 1 19 1 0 93 chain 3191 chr1 248956422 + 220953273 220953311 LTR33B 472 + 391 429 97974 38 chain 35247 chr1 248956422 + 220969237 220969638 L1PA7 6471 + 5885 6293 37866 285 0 7 116 chain 16649 chr1 248956422 + 220973504 220973724 L1PA8 5853 + 5637 5853 60216 42 1 0 9 1 0 50 1 0 22 1 0 93 chain 117309 chr1 248956422 + 220995696 220996946 L1HS 6032 + 4513 5763 15998 1250 chain 9508 chr1 248956422 + 221006187 221006325 HSMAR2 1300 + 1151 1294 71456 37 0 3 40 10 12 51 chain 529516 chr1 248956422 + 221047138 221053552 L1PA7 6471 + 2 6470 1851 360 1 0 49 0 1 611 1 2 191 0 1 390 0 1 151 0 11 397 0 1 457 21 23 109 11 12 220 0 4 487 7 6 350 1 0 83 0 23 255 1 0 72 9 8 1192 0 5 145 0 12 357 0 1 147 0 1 266 5 1 55 2 0 11 chain 14724 chr1 248956422 + 221061751 221062072 L1PB1 5432 + 5120 5427 62635 18 1 0 9 1 0 11 7 11 51 2 1 16 1 0 43 1 0 16 22 12 19 7 4 15 2 7 17 1 0 21 1 0 8 6 5 18 2 0 5 chain 7720 chr1 248956422 + 221120331 221120437 MLT1B 390 + 281 388 75562 18 1 2 87 chain 29569 chr1 248956422 + 221189399 221189715 AluYb8 318 + 0 315 42523 206 1 0 109 chain 459486 chr1 248956422 + 221206588 221212534 L1PA7 6471 + 3 6458 4142 400 1 0 9 44 30 316 0 3 451 0 1 1026 0 2 190 4 5 329 2 0 85 1 3 298 231 0 352 1 0 190 6 4 647 0 725 392 0 2 27 0 1 52 1 2 74 3 2 67 0 4 9 2 0 601 4 22 32 0 3 99 chain 50150 chr1 248956422 + 221233632 221234356 LTR12D 1347 + 405 1347 29506 130 2 33 17 6 5 103 19 13 134 17 21 67 0 200 205 10 0 14 chain 3361 chr1 248956422 + 221254949 221254987 L1ME1 1623 + 1236 1274 96475 38 chain 26718 chr1 248956422 + 221275765 221276252 MER51A 677 + 6 660 46662 126 57 60 69 36 207 64 7 8 43 8 0 19 0 1 4 1 0 53 chain 26900 chr1 248956422 + 221587005 221587369 THE1B 368 + 0 368 46408 15 2 0 22 0 5 23 1 2 96 6 5 171 0 1 28 chain 74034 chr1 248956422 + 221587384 221588362 THE1B-int 1605 + 15 1031 23085 99 14 12 29 1 4 242 0 2 29 0 25 24 0 1 27 1 0 159 4 0 41 9 10 291 0 13 8 chain 36584 chr1 248956422 + 221590752 221591200 MLT2A1 477 + 0 477 37022 140 0 1 28 1 5 211 3 27 65 chain 36360 chr1 248956422 + 221591354 221591779 L1PA7 6471 + 6047 6470 37169 418 2 0 5 chain 55871 chr1 248956422 + 221892766 221893598 L1PA16 3655 + 1559 2392 27599 89 0 1 77 4 3 56 17 10 85 10 13 13 1 2 92 0 1 153 0 1 78 6 0 62 7 10 23 19 16 7 0 8 33 chain 24910 chr1 248956422 + 221931877 221932234 L1PA8A 6298 + 5931 6290 49414 96 0 1 161 11 12 39 22 22 28 chain 35868 chr1 248956422 + 221947780 221948228 LTR7C 471 + 0 449 37491 284 1 0 8 0 4 61 1 0 71 2 1 20 chain 444585 chr1 248956422 + 221952485 221957813 L1PA6 6164 + 0 6162 4480 4 1 0 60 1 2 24 6 741 365 6 17 515 1 0 605 6 7 24 0 1 37 0 4 46 0 1 440 0 3 240 7 8 45 0 1 710 2 1 223 0 7 1172 1 0 257 0 1 244 2 0 156 0 2 6 3 99 23 18 0 64 7 0 7 chain 36006 chr1 248956422 + 221958175 221958614 LTR7C 471 + 11 449 37414 430 1 0 8 chain 27072 chr1 248956422 + 221965923 221966356 LTR7Y 441 + 0 441 46165 48 3 11 39 16 8 54 75 84 21 1 0 176 chain 295046 chr1 248956422 + 221966356 221969977 HERVH-int 3825 + 0 3825 6985 532 5 0 18 64 0 20 1 0 10 1 0 24 28 0 15 0 37 41 1 0 59 0 1 7 0 2 12 0 3 660 0 1 239 8 35 299 0 10 321 0 4 199 0 1 363 0 1 47 0 3 106 9 11 39 8 218 260 0 2 225 chain 27377 chr1 248956422 + 221971192 221971633 LTR7Y 441 + 0 441 45731 55 14 6 42 9 0 57 68 84 21 1 0 78 0 2 96 chain 53167 chr1 248956422 + 221971984 221972731 MER4E1 777 + 0 777 28507 25 2 1 84 2 0 6 5 7 32 12 13 163 1 20 82 0 1 57 3 7 47 0 6 86 1 0 4 0 1 135 chain 6703 chr1 248956422 + 222013006 222013086 MADE1 96 + 0 96 78632 49 0 16 31 chain 119072 chr1 248956422 + 222049564 222050989 LTR12C 1709 + 0 1709 15686 210 5 6 84 1 2 348 0 278 184 1 0 4 4 2 106 0 4 24 0 1 110 2 1 112 0 3 230 chain 35340 chr1 248956422 + 222051008 222051454 MLT2A1 477 + 0 477 37808 169 4 1 215 3 37 55 chain 10627 chr1 248956422 + 222065362 222065490 LOR1a 498 + 337 465 69176 128 chain 6958 chr1 248956422 + 222077129 222077222 LTR72B 493 + 393 487 77749 34 1 2 58 chain 67145 chr1 248956422 + 222135454 222136222 L1PA5 6144 + 5374 6139 24662 757 3 0 8 chain 515854 chr1 248956422 + 222145502 222151821 L1PA7 6471 + 3 6458 2475 333 0 19 51 0 6 385 1 0 360 0 1 104 0 3 77 0 1 379 0 1 27 0 1 419 0 1 94 1 0 254 0 2 111 16 0 27 0 2 17 0 2 271 18 110 86 2 1 355 1 0 146 0 1 491 20 37 4 0 1 391 1 0 4 0 1 63 0 1 33 0 4 275 1 0 667 2 0 80 0 1 106 0 3 646 chain 10912 chr1 248956422 + 222164066 222164220 L1MA2 4263 + 3721 3872 68678 76 14 11 64 chain 70279 chr1 248956422 + 222177365 222178348 L1PA8 5853 + 4873 5853 23932 137 2 0 11 0 6 87 2 0 364 0 1 85 4 0 5 0 3 41 1 0 45 0 3 5 17 13 15 8 7 39 2 1 19 1 0 93 chain 24135 chr1 248956422 + 222187187 222187547 THE1B 368 + 0 368 50599 169 1 0 32 41 49 57 1 2 59 chain 31771 chr1 248956422 + 222208792 222209158 L1PA6 6164 + 5788 6154 40517 366 chain 8878 chr1 248956422 + 222242637 222242784 LTR49 580 + 257 416 72818 78 31 43 38 chain 80929 chr1 248956422 + 222296682 222297872 L1PA11 4918 + 3420 4578 21450 65 7 10 164 2 1 385 1 0 65 28 26 96 4 0 81 0 1 17 6 0 62 2 1 13 2 0 67 2 0 13 2 1 20 4 0 9 47 37 13 2 0 11 chain 5720 chr1 248956422 + 222301181 222301372 L1MB3 1562 + 1386 1552 82253 32 37 15 5 2 0 40 57 56 18 chain 30661 chr1 248956422 + 222322373 222322730 L1PA5 6144 + 5777 6135 41413 35 0 1 322 chain 137917 chr1 248956422 + 222354403 222355908 L1PA3long 6157 + 4652 6157 13274 1505 chain 196832 chr1 248956422 + 222395347 222397518 L1PA3long 6157 + 3987 6157 9817 684 1 0 1486 chain 261364 chr1 248956422 + 222406471 222409532 L1P2 5180 + 2089 5178 7930 112 0 1 120 1 0 112 0 3 178 0 2 560 0 1 63 0 2 255 0 18 841 0 4 354 0 1 371 1 0 49 1 0 38 1 0 4 chain 66495 chr1 248956422 + 222426332 222427773 L1PB3 3668 + 6 1100 24826 12 1 0 9 1 0 27 2 0 9 13 12 27 2 0 7 15 3 13 25 12 58 0 4 31 1 5 29 42 18 55 0 1 143 14 15 32 1 0 24 0 1 150 0 1 14 4 14 134 343 28 62 25 28 116 chain 23363 chr1 248956422 + 222456884 222457234 MSTA 426 + 4 382 51831 36 0 8 36 2 0 24 0 21 24 1 5 46 7 5 18 17 16 139 chain 26759 chr1 248956422 + 222458894 222459279 MSTA 426 + 2 408 46602 94 12 33 76 0 2 29 18 16 156 chain 3515 chr1 248956422 + 222465004 222465043 tRNA-Thr-ACA 39 + 0 39 95139 39 chain 5944 chr1 248956422 + 222486891 222486954 SVA_C 1631 + 41 104 81303 63 chain 179733 chr1 248956422 + 222486966 222489379 SVA_D 2077 + 0 2073 10601 13 1 0 6 1 0 3 1 0 12 0 5 731 40 0 133 3 0 12 2 0 1 258 0 31 11 0 87 41 10 42 0 3 94 49 0 169 0 49 672 chain 13021 chr1 248956422 + 222487947 222488170 SVA_D 2077 + 976 1217 32520 27 1 18 13 8 9 174 chain 2861 chr1 248956422 + 222488489 222488538 SVA_D 2077 + 1310 1408 32520 47 0 49 2 chain 22823 chr1 248956422 + 222499734 222499993 MER11B 1079 + 0 259 52630 259 chain 64926 chr1 248956422 + 222500010 222500801 MER11C 1089 + 279 1089 25210 33 2 19 55 0 1 199 12 13 490 chain 19871 chr1 248956422 + 222688862 222689156 Tigger3b 1229 + 333 637 56581 47 0 2 41 10 11 4 1 0 95 4 0 12 0 1 22 3 0 5 0 11 13 0 1 22 0 2 15 chain 4812 chr1 248956422 + 222716585 222716655 MER58A 224 + 47 115 86640 36 0 1 4 3 0 27 chain 31780 chr1 248956422 + 222762343 222762718 L1PA5 6144 + 5751 6128 40514 181 0 3 54 1 0 139 chain 209887 chr1 248956422 + 222763642 222766108 L1PA6 6164 + 3662 6156 9351 1017 9 7 567 0 1 61 1 0 5 0 1 510 0 1 143 17 45 136 chain 6062 chr1 248956422 + 222793547 222793622 L1MA7 2200 + 1874 1949 80861 75 chain 2556 chr1 248956422 + 222795672 222795721 MER52A 1651 + 896 936 103350 20 10 1 19 chain 3092 chr1 248956422 + 222795743 222795783 MER52A 1651 + 790 830 98857 40 chain 38213 chr1 248956422 + 222853243 222853832 L1MA5A 2387 + 1734 2300 35899 43 4 9 130 0 6 108 1 3 37 2 0 37 1 0 48 2 0 60 46 15 41 0 1 23 1 0 5 chain 54838 chr1 248956422 + 222857331 222857997 L1PA10 4194 + 3486 4150 27933 262 1 0 187 0 2 178 6 3 32 chain 84850 chr1 248956422 + 222902346 222903283 L1PA4 6152 + 5032 5976 20648 272 0 4 553 0 3 112 chain 40882 chr1 248956422 + 222906369 222906919 MER41A 554 + 3 545 34039 51 16 15 99 0 1 246 1 0 23 11 3 60 0 1 43 chain 31886 chr1 248956422 + 222916840 222917268 LTR3B 427 + 0 423 40427 305 3 0 27 19 13 22 0 5 27 1 0 24 chain 33483 chr1 248956422 + 222919187 222919613 LTR3B 427 + 0 423 39102 75 0 2 108 0 1 119 3 0 27 6 3 88 chain 309154 chr1 248956422 + 222959751 222963875 L1PA8A 6298 + 2450 6291 6631 60 13 6 62 0 4 173 0 4 69 0 1 133 3 7 113 0 1 315 3 0 15 0 4 24 0 4 260 2 0 483 0 3 11 2 1 232 316 0 163 0 1 89 1 5 497 0 1 289 8 11 17 1 2 60 3 6 5 1 0 131 3 4 141 0 7 282 4 5 140 chain 45101 chr1 248956422 + 223032586 223033134 MER41A 554 + 0 554 31527 468 0 5 34 1 2 45 chain 17298 chr1 248956422 + 223049811 223050037 MER57A1 433 + 20 251 59460 44 7 12 175 chain 38199 chr1 248956422 + 223069866 223070409 MER41A 554 + 0 554 35906 42 0 1 25 24 25 91 1 2 45 7 9 188 1 2 38 0 5 81 chain 5745 chr1 248956422 + 223073243 223073395 MER20 218 + 52 203 82153 10 1 0 25 3 1 30 47 48 19 1 2 16 chain 127665 chr1 248956422 + 223099800 223101367 THE1B-int 1605 + 0 1600 14333 432 0 25 280 0 9 138 1 0 716 chain 6380 chr1 248956422 + 223101964 223102037 THE1B 368 + 295 368 79744 73 chain 16865 chr1 248956422 + 223119429 223119670 MER4D1 891 + 0 238 59954 41 0 1 10 5 6 17 3 2 34 4 0 127 chain 4714 chr1 248956422 + 223128879 223128935 MER51A 677 + 605 661 87182 56 chain 18373 chr1 248956422 + 223152344 223152606 MSTA-int 1630 + 0 259 58275 115 1 5 29 12 5 105 chain 531920 chr1 248956422 + 223167654 223173633 L1PA3long 6157 + 0 6152 1753 152 0 1 22 1 40 482 1 2 69 8 136 345 2 1 812 1 2 143 0 4 340 0 1 145 1 0 93 3 1 2049 0 2 1310 chain 11950 chr1 248956422 + 223217962 223218216 MSTB1 431 + 173 431 66922 33 1 0 11 6 12 38 4 5 48 34 31 20 0 1 28 1 0 4 11 12 15 chain 25763 chr1 248956422 + 223251948 223252229 L1PA5 6144 + 5863 6144 48078 281 chain 537260 chr1 248956422 + 223278088 223284240 L1PA5 6144 + 3 6143 1497 627 2 0 99 1 0 183 5 0 514 0 1 4 25 8 353 3 5 3144 1 11 26 1 0 335 0 1 675 7 0 10 0 7 137 chain 17579 chr1 248956422 + 223284557 223284946 L1MA5A 2387 + 1944 2296 59149 49 51 50 26 11 10 29 2 1 15 9 3 28 2 0 28 7 6 30 3 0 13 22 0 64 chain 25301 chr1 248956422 + 223314518 223314878 THE1B 368 + 0 368 48783 146 3 0 21 0 1 30 35 45 125 chain 42282 chr1 248956422 + 223317000 223317536 MER41A 554 + 0 554 33205 387 10 12 38 0 16 101 chain 71049 chr1 248956422 + 223318706 223319462 L1HS 6032 + 4420 5176 23752 756 chain 116547 chr1 248956422 + 223325520 223327222 L1PB3 3668 + 1847 3562 16123 25 2 4 234 10 7 80 21 21 159 1 21 267 6 5 45 0 5 268 2 0 17 14 11 66 0 2 129 0 1 5 25 27 44 1 0 101 1 0 54 66 59 10 0 1 13 3 1 33 chain 540590 chr1 248956422 + 223446992 223453019 L1PA3long 6157 + 1 6156 1305 151 0 1 555 2 1 72 1 129 566 0 1 1213 1 0 620 1 0 1789 0 1 1056 chain 28493 chr1 248956422 + 223517923 223518397 L1PB 1623 + 1141 1575 44140 140 0 2 13 12 4 146 1 0 7 2 1 30 1 0 4 3 0 13 4 0 15 1 0 6 54 31 22 chain 10070 chr1 248956422 + 223661203 223661328 L1MB3 1562 + 787 912 70250 125 chain 3788 chr1 248956422 + 223669562 223669838 L1MB7 1623 + 1248 1485 92931 17 141 125 33 1 0 6 54 33 17 1 0 6 chain 5570 chr1 248956422 + 223690050 223690114 U6 107 + 0 64 82932 64 chain 3872 chr1 248956422 + 223712054 223712136 MIRb 242 + 107 187 92338 33 25 23 24 chain 14150 chr1 248956422 + 223729185 223729396 MER47A 366 + 59 266 63379 91 15 14 21 5 2 79 chain 14804 chr1 248956422 + 223730253 223730456 MER30 238 + 0 238 62525 16 7 21 63 0 24 75 3 0 39 chain 4183 chr1 248956422 + 223779432 223779484 MER6B 211 - 159 211 90244 52 chain 16072 chr1 248956422 + 223815733 223815996 Tigger3a 397 + 39 362 60931 9 0 1 21 30 88 99 2 0 76 8 11 18 chain 41079 chr1 248956422 + 223890293 223890954 LTR9B 643 + 0 643 33915 133 0 2 65 4 9 5 0 2 172 5 6 35 71 41 30 7 0 10 0 10 71 13 12 40 chain 57001 chr1 248956422 + 223892238 223893304 MER4E1 777 + 0 772 27264 17 5 0 24 1 0 155 7 5 4 1 0 127 309 0 158 3 25 28 6 4 9 0 4 212 chain 85658 chr1 248956422 + 223972256 223973316 MER11B 1079 + 0 1079 20511 266 0 1 49 1 18 49 0 1 386 2 4 138 7 6 146 5 4 11 chain 41999 chr1 248956422 + 224025313 224025812 L1PA7 6471 + 5969 6465 33357 338 2 1 151 2 0 6 chain 37625 chr1 248956422 + 224086529 224087033 LTR10F 562 + 0 562 36322 114 0 58 60 25 21 13 9 15 190 2 0 91 chain 139243 chr1 248956422 + 224100207 224101732 SVA_D 2077 + 25 2077 13165 685 0 40 151 0 487 689 chain 11615 chr1 248956422 + 224242055 224242293 L1MB3 1562 + 1344 1555 67543 7 1 0 40 1 2 28 1 0 4 40 15 84 13 12 19 chain 10376 chr1 248956422 + 224265601 224265781 MSTD 398 + 0 185 69658 123 15 40 8 20 0 14 chain 5094 chr1 248956422 + 224297419 224297602 L1MB3 1562 + 1383 1555 85185 37 88 78 26 8 7 24 chain 5373 chr1 248956422 + 224305390 224305454 U6 107 + 11 78 83831 32 0 3 32 chain 76001 chr1 248956422 + 224339830 224340798 LTR5_Hs 974 + 0 974 22567 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 16649 chr1 248956422 + 224358470 224358692 MER30 238 + 0 238 60217 98 12 0 11 4 32 97 chain 5343 chr1 248956422 + 224369973 224370070 L1MA3 4352 + 4262 4352 83989 20 1 0 6 1 0 26 1 0 14 6 2 22 chain 22006 chr1 248956422 + 224371678 224371936 AluSp 311 + 18 276 53828 258 chain 25031 chr1 248956422 + 224472299 224472775 L1PB1 5432 + 4982 5422 49228 116 6 7 9 7 0 24 8 6 13 6 2 9 2 0 52 19 17 45 1 0 13 1 0 7 16 6 18 9 6 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 11261 chr1 248956422 + 224519250 224519455 MLT2B1 522 + 179 408 68150 17 1 2 15 25 14 24 13 47 110 chain 51452 chr1 248956422 + 224536987 224537711 MER4A 717 + 0 717 29067 35 5 6 80 4 0 8 10 0 37 4 5 192 0 11 120 13 5 74 0 1 30 1 2 111 chain 39543 chr1 248956422 + 224550989 224551437 L1PA4 6152 + 5410 5856 34989 298 7 5 143 chain 16125 chr1 248956422 + 224554479 224555104 MER2 342 + 80 342 60864 60 347 0 27 5 11 68 9 7 40 29 9 40 chain 18131 chr1 248956422 + 224580565 224580822 AluSc5 308 + 20 296 58532 20 1 0 96 8 5 6 0 3 75 4 24 47 chain 5286 chr1 248956422 + 224596806 224596869 MER21A 919 + 59 122 84262 63 chain 62552 chr1 248956422 + 224598078 224598901 Tigger1 2417 + 1545 2383 25743 22 2 1 684 2 0 58 0 2 34 3 19 18 chain 5256 chr1 248956422 + 224601684 224601747 MLT1B 390 + 291 354 84412 63 chain 13833 chr1 248956422 + 224613525 224614218 MSTA 426 + 18 426 63822 95 1 19 15 178 179 61 304 0 39 chain 15373 chr1 248956422 + 224629307 224629502 MER4E1 777 + 582 777 61827 30 3 2 96 0 1 66 chain 82321 chr1 248956422 + 224799592 224800480 L1PA3long 6157 + 5262 6157 21171 735 0 7 153 chain 11286 chr1 248956422 + 224846486 224846743 MER4D 903 + 3 267 68104 23 1 0 8 94 101 5 0 1 4 1 0 45 0 1 76 chain 3340 chr1 248956422 + 224849111 224849166 L1MA8 2339 + 2213 2265 96683 21 3 1 22 1 0 8 chain 47573 chr1 248956422 + 224876433 224877108 L1PB2 3958 + 2959 3647 30452 98 0 1 30 2 0 200 0 2 19 2 0 51 0 3 8 0 6 55 11 9 10 2 0 20 0 3 10 3 8 53 3 4 4 0 1 63 1 0 30 chain 56835 chr1 248956422 + 224927422 224928152 L1PA8 5853 + 5130 5853 27315 434 1 0 44 2 0 71 1 0 9 14 13 43 1 0 16 1 0 93 chain 81322 chr1 248956422 + 224969625 224970684 MER11B 1079 + 0 1064 21366 182 0 6 76 3 0 155 12 16 22 0 3 103 34 32 22 6 8 147 8 2 143 0 1 146 chain 102103 chr1 248956422 + 224976366 224977497 L1PA3long 6157 + 5025 6157 18052 874 1 2 256 chain 13790 chr1 248956422 + 224980843 224981000 L1PA7 6471 + 6313 6470 63897 157 chain 47206 chr1 248956422 + 224981830 224982387 LTR22 571 + 0 556 30570 305 2 1 250 chain 50835 chr1 248956422 + 224983358 224984124 L1PB 1623 + 843 1585 29261 34 0 1 81 0 6 331 0 5 145 1 0 7 2 1 29 2 1 5 3 0 13 4 0 12 63 39 22 2 0 10 chain 52277 chr1 248956422 + 224984732 224985469 L1PB1 5432 + 4579 5303 28793 187 0 3 169 1 0 161 5 6 9 1 0 24 1 0 9 16 11 9 2 0 53 2 1 16 2 1 43 1 0 15 4 0 7 chain 32609 chr1 248956422 + 224985627 224986084 L1M1 2793 + 1012 1477 39856 56 7 11 16 3 4 18 0 4 51 0 2 6 1 0 73 8 5 104 0 1 114 chain 14891 chr1 248956422 + 224997786 224997950 L1PA3long 6157 + 5804 5968 62399 164 chain 19132 chr1 248956422 + 225039700 225039901 AluYa5 310 + 104 305 57417 201 chain 25123 chr1 248956422 + 225068837 225069104 AluYa5 310 + 37 304 49084 267 chain 41389 chr1 248956422 + 225107921 225108471 MLT2A2 560 + 0 560 33741 168 31 30 202 2 13 147 chain 233639 chr1 248956422 + 225128254 225130828 L1PA3long 6157 + 3582 6155 8643 1750 0 1 4 1 0 524 1 0 294 chain 441424 chr1 248956422 + 225168188 225173308 L1PA4 6152 + 10 5189 4546 112 7 21 784 1 5 451 0 24 184 1 5 32 3 2 689 0 1 1366 0 4 274 0 4 670 0 5 546 chain 21113 chr1 248956422 + 225176559 225176889 THE1B 368 + 0 361 54996 44 7 39 20 0 1 62 1 0 9 1 0 19 13 15 4 1 0 74 7 6 68 chain 114573 chr1 248956422 + 225176896 225178790 THE1B-int 1605 + 0 1605 16466 413 1 0 10 3 28 257 36 78 156 20 21 67 14 16 317 0 1 13 371 13 17 2 1 197 chain 299884 chr1 248956422 + 225209734 225219994 L1P3 4156 + 32 4139 6832 219 2 1 67 2 1 102 12 2 429 9 15 24 12 13 56 0 3 765 8 13 144 0 3 64 8 10 61 0 2 146 6163 0 214 1 2 250 5 1 147 6 5 92 0 4 193 0 1 12 0 4 127 41 29 247 1 0 23 12 22 352 3 2 28 1 2 64 3 4 105 16 13 24 chain 265288 chr1 248956422 + 225223326 225228797 HERVK22-int 3844 + 1 3844 7819 1045 1 0 7 13 14 12 2 1 119 0 1 25 0 1 153 0 21 159 1 5 711 0 1 218 0 1 54 0 1 9 0 1 119 0 3 142 10 12 6 0 1 204 1 0 72 7 5 18 1 0 38 1 0 20 2 0 36 4 0 11 1 0 41 2025 374 88 16 15 79 chain 55364 chr1 248956422 + 225229271 225229926 L1PA7 6471 + 5813 6470 27756 464 0 3 5 2 0 28 0 1 156 chain 146959 chr1 248956422 + 225245425 225247387 L1PA8 5853 + 3907 5848 12546 59 0 18 35 0 1 25 20 0 12 18 6 136 0 2 380 18 13 338 0 1 76 2 0 302 0 2 50 0 1 200 1 0 44 2 0 70 2 1 10 1 0 5 0 1 49 1 0 21 9 7 76 chain 6014 chr1 248956422 + 225250976 225251048 MLT1B 390 + 316 388 81023 72 chain 203992 chr1 248956422 + 225268179 225270483 L1PA5 6144 + 3832 6141 9571 376 0 1 1158 0 1 49 7 13 109 0 1 595 4 0 6 chain 67230 chr1 248956422 + 225329554 225330520 L1MA2 4263 + 3157 4114 24640 36 0 9 107 5 6 269 38 34 44 1 0 102 1 0 38 7 4 149 1 0 9 2 1 91 7 0 47 1 0 11 chain 265700 chr1 248956422 + 225384368 225387384 L1PA5 6144 + 3121 6132 7807 2173 1 0 372 5 0 335 0 1 130 chain 24399 chr1 248956422 + 225431945 225432333 LTR12C 1709 + 650 1037 50172 62 41 0 37 27 27 61 1 0 139 0 41 20 chain 4673 chr1 248956422 + 225438550 225438610 MER67A 545 + 2 62 87428 60 chain 5751 chr1 248956422 + 225453165 225453249 L1MB3 1562 + 1470 1553 82123 54 3 2 27 chain 35842 chr1 248956422 + 225456280 225456736 MLT2A1 477 + 0 477 37502 168 14 11 205 0 24 69 chain 117071 chr1 248956422 + 225472523 225473899 LTR12C 1709 + 0 1709 16045 728 4 331 53 1 0 4 4 2 17 0 6 83 0 4 408 1 0 73 chain 12720 chr1 248956422 + 225569322 225569474 L1PA6 6164 + 6003 6157 65580 41 1 0 103 0 3 7 chain 114626 chr1 248956422 + 225615043 225616343 SVA_B 1603 + 0 1603 16452 25 0 22 155 1 0 471 0 281 193 1 0 342 1 2 63 0 1 48 chain 8310 chr1 248956422 + 225639457 225639693 MSTD 398 + 154 393 74136 18 83 84 25 2 3 28 0 1 9 18 17 27 0 1 26 chain 4840 chr1 248956422 + 225646814 225646877 MLT1B 390 + 322 389 86474 53 0 4 10 chain 39231 chr1 248956422 + 225670655 225671188 MLT2A2 560 + 0 560 35191 169 13 29 199 5 16 76 0 1 12 2 1 57 chain 5901 chr1 248956422 + 225741274 225741340 U6 107 + 0 66 81481 66 chain 28653 chr1 248956422 + 225743762 225744061 AluYa5 310 + 1 300 43868 299 chain 3804 chr1 248956422 + 225908062 225908105 MLT1B 390 + 288 331 92815 43 chain 24528 chr1 248956422 + 225929601 225929879 L1PA5 6144 + 5866 6144 49981 278 chain 88473 chr1 248956422 + 225965842 225966858 LTR5A 1029 + 0 1029 19951 134 0 13 882 chain 129498 chr1 248956422 + 225969586 225971218 LTR12C 1709 + 0 1709 14095 285 6 10 214 4 5 60 5 4 151 40 0 24 0 2 82 1 0 116 5 115 44 1 0 4 4 2 106 0 4 49 8 9 423 chain 2699 chr1 248956422 + 225970311 225970346 LTR12C 1709 + 847 882 48920 35 chain 5655 chr1 248956422 + 225971262 225971332 L1MB3 1562 + 1206 1276 82531 70 chain 25915 chr1 248956422 + 226007933 226008220 AluSq10 312 + 11 300 47839 140 0 2 147 chain 4777 chr1 248956422 + 226054796 226054857 MER53 195 + 6 67 86814 61 chain 15598 chr1 248956422 + 226100991 226102469 Tigger3b 1229 + 59 701 61538 45 30 27 78 1208 373 100 0 2 17 chain 6336 chr1 248956422 + 226103993 226104075 Tigger3c 601 + 364 459 79881 21 0 4 9 0 9 52 chain 20615 chr1 248956422 + 226137195 226137472 AluY 311 + 8 288 55613 40 8 14 220 3 0 6 chain 4072 chr1 248956422 + 226191689 226191734 MER41A 554 + 421 466 90940 45 chain 6256 chr1 248956422 + 226257344 226257451 L1MCa 1829 + 1568 1663 80150 54 2 0 18 3 0 15 7 0 8 chain 5643 chr1 248956422 + 226304269 226304335 U13_ 108 + 10 76 82591 66 chain 55154 chr1 248956422 + 226315029 226317162 HSMAR2 1300 + 46 1256 27824 173 31 1 45 887 316 319 53 54 17 337 16 64 1 6 6 0 10 10 16 3 115 25 21 34 chain 30800 chr1 248956422 + 226315279 226315706 MER57A1 433 + 2 433 41308 29 4 3 87 16 14 154 0 1 112 0 6 25 chain 27217 chr1 248956422 + 226340127 226340482 THE1B 368 + 0 368 45946 44 0 15 113 2 1 120 1 0 75 chain 117398 chr1 248956422 + 226340482 226342666 THE1B-int 1605 + 0 1600 15984 21 1 0 74 1 2 16 0 3 27 11 6 281 1 26 640 6 10 11 30 33 123 0 1 32 306 0 134 0 1 85 310 0 74 chain 5692 chr1 248956422 + 226428765 226428880 MER5B 177 + 25 161 82382 22 32 53 61 chain 73743 chr1 248956422 + 226431593 226432455 L1PA5 6144 + 5257 6132 23155 37 0 5 379 0 1 96 0 2 7 4 2 200 3 0 9 0 10 127 chain 20599 chr1 248956422 + 226445632 226445935 MER49 923 + 9 317 55633 78 12 14 179 13 16 21 chain 5508 chr1 248956422 + 226446955 226448366 LTR24C 604 + 0 604 83209 62 1316 509 33 chain 4013 chr1 248956422 + 226464717 226464763 LTR12D 1347 + 706 752 91361 46 chain 29518 chr1 248956422 + 226701322 226701631 AluYk12 309 + 0 309 42587 309 chain 43511 chr1 248956422 + 226850934 226851468 MER41A 554 + 0 553 32450 213 10 28 101 0 1 210 chain 189957 chr1 248956422 + 226851549 226856302 MER4-int 2692 + 74 2692 10118 25 1 0 14 3 2 141 1 0 173 1 0 4 0 1 69 321 0 200 0 1 204 1 0 5 10 5 139 13 15 30 1 0 74 2 3 14 0 3 194 0 16 28 1 0 2 1850 0 16 10 16 114 0 4 143 0 1 19 0 1 7 5 6 126 1 0 28 2 3 85 1 2 4 0 1 85 6 10 95 0 1 23 2 0 40 2 0 9 10 1 9 0 2 279 12 22 92 0 5 7 chain 161534 chr1 248956422 + 226853229 226855064 L1PA6 6164 + 4329 6162 11643 1698 4 0 124 0 2 9 chain 6414 chr1 248956422 + 226869855 226870027 L1MB5 1630 + 1458 1621 79625 17 28 24 8 0 13 5 14 0 24 1 0 47 6 5 15 2 0 5 chain 3216 chr1 248956422 + 226915900 226915935 MER3 215 - 0 35 97743 35 chain 34932 chr1 248956422 + 226922247 226922746 THE1B-int 1605 + 0 598 38069 16 0 2 88 0 30 61 9 8 69 0 6 77 12 10 19 9 73 139 chain 300583 chr1 248956422 + 226926834 226930192 L1PA5 6144 + 2708 6086 6811 120 0 4 1366 0 10 1089 0 4 509 0 1 24 0 1 250 chain 152735 chr1 248956422 + 226997876 227000093 L1PA7 6471 + 4549 6454 12186 80 17 0 37 0 8 30 0 1 917 1 2 212 305 0 618 chain 20551 chr1 248956422 + 227037763 227038028 HSMAR2 1300 + 16 292 55714 43 0 1 7 2 0 132 0 1 36 0 11 45 chain 159279 chr1 248956422 + 227132147 227133957 SVA_D 2077 + 42 2056 11791 125 0 7 9 0 2 711 12 54 10 0 1 25 0 2 14 4 56 277 0 99 9 1 0 613 chain 19966 chr1 248956422 + 227222549 227222851 MER39B 650 + 284 587 56445 62 0 1 87 4 1 73 0 1 6 29 31 41 chain 17333 chr1 248956422 + 227234804 227235027 MER30 238 + 0 238 59421 104 4 19 115 chain 95138 chr1 248956422 + 227248246 227249829 L1MA2 4263 + 2411 3791 18890 29 9 10 82 9 0 7 9 7 98 3 1 56 5 0 33 170 0 155 1 0 19 1 2 240 5 9 207 2 15 81 26 0 105 25 20 32 2 1 4 0 1 33 5 3 130 chain 23978 chr1 248956422 + 227256140 227256485 L1PA8 5853 + 5515 5853 50827 49 1 0 44 2 0 40 2 0 30 2 1 8 1 2 32 0 1 18 2 1 19 2 1 86 1 0 6 chain 107439 chr1 248956422 + 227275604 227277091 SVA_A 1864 + 6 1864 17390 10 0 9 3 17 0 16 5 0 49 0 11 78 1 0 469 3 0 32 8 302 22 1 18 65 4 185 24 128 0 13 3 0 34 0 16 502 chain 4193 chr1 248956422 + 227288016 227288116 MER68 562 + 423 523 90179 48 37 37 15 chain 28511 chr1 248956422 + 227300142 227300624 L1PB3 3668 + 3168 3614 44108 20 0 1 100 2 1 100 2 1 81 34 10 21 2 1 24 3 1 37 7 3 13 1 0 13 7 4 15 chain 325504 chr1 248956422 + 227402234 227407561 L1PB1 5432 + 33 5420 6295 20 0 1 5 7 0 233 308 0 92 7 1103 57 0 4 48 0 6 374 4 5 74 1 5 187 2 1 258 13 4 52 0 1 154 343 2 123 2 1 305 6 1 109 1 0 220 0 2 28 2 0 195 1 0 6 0 1 10 10 12 180 5 6 4 1 0 293 346 0 413 1 2 182 4 3 264 1 4 20 1 2 11 9 0 22 1 0 9 5 4 7 4 0 11 2 0 50 3 2 16 1 0 44 1 0 15 3 0 13 9 0 18 3 1 4 1 0 14 2 0 24 1 0 20 2 1 13 1 0 16 chain 514625 chr1 248956422 + 227473591 227480021 L1PA7 6471 + 0 6470 2537 412 1 0 102 3 0 6 6 3 438 0 1 74 2 0 187 11 22 514 1 0 99 11 19 549 0 3 197 9 6 67 25 31 106 2 0 8 10 10 7 0 2 23 0 4 613 1 0 20 1 2 17 4 0 7 13 17 170 17 4 155 0 4 98 25 11 202 0 2 107 0 3 33 0 1 21 2 0 38 0 18 387 0 4 160 0 1 401 0 2 26 0 1 23 2 1 153 1 2 26 1 7 28 0 4 36 9 8 236 1 0 51 0 3 17 0 2 458 chain 326353 chr1 248956422 + 227551779 227555843 L1PA4 6152 + 1854 5975 6278 338 2 72 56 24 7 59 0 4 338 0 5 347 18 19 115 1 0 342 5 0 1444 0 1 891 1 0 83 chain 8979 chr1 248956422 + 227561180 227561302 5S 121 + 0 121 72603 46 5 4 71 chain 34918 chr1 248956422 + 227679249 227679711 LTR2 463 + 0 463 38079 136 1 0 9 10 11 204 18 19 84 chain 365213 chr1 248956422 + 227681188 227685791 Harlequin-int 5206 + 125 5206 5732 7 0 3 12 7 5 148 1 0 67 19 4 65 0 2 46 8 0 63 0 2 112 0 1 349 1 0 278 1 0 132 0 1 141 1 2 357 0 2 59 1 0 448 0 1 126 0 1 744 8 1 107 1 511 189 3 1 164 8 7 251 0 8 6 10 0 296 5 6 93 1 2 162 8 7 65 6 1 18 1 0 8 chain 28720 chr1 248956422 + 227685793 227686144 LTR2 463 + 2 358 43755 218 1 6 132 chain 472883 chr1 248956422 + 227699895 227705771 L1PA7 6471 + 565 6469 3790 82 6 7 212 7 8 482 0 8 583 1 0 33 1 2 366 0 1 83 10 0 200 0 2 255 0 4 155 0 6 54 1 0 255 9 10 111 17 13 24 3 4 24 0 4 162 0 1 157 3 12 119 2 0 74 0 12 499 12 3 70 0 8 336 3 0 274 0 5 157 0 1 142 11 0 7 0 1 9 2 1 19 2 0 514 0 4 165 8 0 8 0 8 115 2 1 19 0 2 11 chain 116344 chr1 248956422 + 227716335 227717791 L1PA10 4194 + 2043 3508 16163 176 3 7 320 0 1 463 15 18 13 0 2 124 8 7 334 chain 5007 chr1 248956422 + 227717795 227717857 Harlequin-int 5206 + 2781 2843 85627 62 chain 92703 chr1 248956422 + 227717858 227719065 Harlequin-int 5206 + 2843 4020 19234 491 27 1 139 9 6 196 4 0 12 1 2 95 34 36 199 chain 88249 chr1 248956422 + 227722268 227723331 MER11C 1089 + 0 1073 19994 227 3 0 6 0 8 9 0 1 66 5 8 242 8 7 18 0 1 122 0 1 357 chain 6785 chr1 248956422 + 227727205 227727285 LTR45C 530 + 28 108 78369 80 chain 7543 chr1 248956422 + 227806721 227806810 MLT1A0 366 + 4 93 76020 89 chain 500752 chr1 248956422 + 227871892 227878287 L1PA7 6471 + 1 6461 3103 402 0 3 751 11 34 40 0 4 269 0 7 8 0 1 274 0 1 5 2 1 26 0 4 470 0 1 6 0 1 6 0 1 251 10 8 8 0 2 47 14 0 110 20 8 100 0 1 14 0 1 46 1 2 17 0 353 48 0 2 238 0 4 133 0 3 1140 0 1 61 0 1 150 30 12 6 0 2 66 3 5 283 6 0 181 1 4 52 315 0 22 0 2 558 0 9 194 chain 7889 chr1 248956422 + 227993573 227993697 Tigger2 2703 + 2509 2658 75153 38 0 5 44 14 34 28 chain 3505 chr1 248956422 + 228121657 228121710 MER65D 500 + 446 500 95206 33 4 5 16 chain 21442 chr1 248956422 + 228255791 228256118 MER1B 344 + 3 342 54593 77 8 12 106 1 3 52 26 32 57 chain 34253 chr1 248956422 + 228421149 228421562 LTR3 431 + 0 419 38522 143 5 6 101 0 1 32 1 5 131 chain 57942 chr1 248956422 + 228432744 228433470 MER4E 760 + 20 748 26982 170 1 0 173 1 3 65 2 1 12 1 0 136 0 3 165 chain 36365 chr1 248956422 + 228433705 228434160 MER4A1 472 + 2 457 37164 283 0 7 4 7 0 161 chain 8699 chr1 248956422 + 228449632 228449748 MER41B 635 + 514 635 73216 35 7 12 74 chain 166365 chr1 248956422 + 228505679 228507637 L1P1 4361 + 1 1941 11313 573 1 0 269 21 4 1094 chain 29423 chr1 248956422 + 228536836 228537276 LTR14B 630 + 0 630 42705 55 0 149 72 0 28 96 38 48 92 12 15 75 chain 8527 chr1 248956422 + 228555792 228555903 5S 121 + 0 121 73629 27 1 11 83 chain 157880 chr1 248956422 + 228660953 228662785 L1PA6 6164 + 4272 6109 11887 61 1 0 292 4 8 32 0 2 110 0 1 938 4 3 390 chain 489356 chr1 248956422 + 228707414 228712807 L1PA3long 6157 + 620 6144 3437 161 0 128 3439 0 3 1793 chain 111850 chr1 248956422 + 228773522 228774849 LTR12C 1709 + 0 1709 16830 300 0 1 135 0 1 213 0 278 184 1 0 5 3 1 106 1 5 167 0 102 129 1 0 82 chain 60703 chr1 248956422 + 228893202 228893870 L1PA3long 6157 + 4554 5222 26175 668 chain 34420 chr1 248956422 + 228895335 228895884 L1PB1 5432 + 4928 5427 38417 175 15 0 14 3 0 20 1 0 10 1 0 9 2 0 3 2 0 9 2 0 52 2 1 16 1 0 44 1 0 15 1 0 4 2 0 11 8 0 16 2 0 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 61323 chr1 248956422 + 228942129 228942896 LTR17 781 + 0 781 26027 207 1 0 5 1 2 93 10 0 20 0 1 178 0 1 207 1 23 44 chain 28679 chr1 248956422 + 228947423 228947857 LTR7Y 441 + 0 441 43834 103 12 3 54 68 84 197 chain 202235 chr1 248956422 + 228947857 228950272 HERVH-int 3825 + 0 3825 9631 259 0 1165 261 6 33 288 0 4 1060 5 6 4 0 1 39 0 210 270 0 2 223 chain 25902 chr1 248956422 + 228951500 228951887 LTR7Y 441 + 0 439 47865 73 0 4 26 12 3 29 40 97 112 1 0 4 0 1 90 chain 64130 chr1 248956422 + 228953516 228954297 LTR17 781 + 0 781 25388 212 3 4 42 1 0 4 5 6 59 1 0 454 chain 31830 chr1 248956422 + 228959793 228960139 L1PA3long 6157 + 5811 6157 40473 346 chain 5468 chr1 248956422 + 229001256 229001316 MER50 708 + 624 684 83367 60 chain 33885 chr1 248956422 + 229015093 229015548 MLT2A1 477 + 0 464 38797 169 4 1 8 1 2 23 0 1 203 4 0 8 11 25 24 chain 79727 chr1 248956422 + 229049498 229050571 L1PB1 5432 + 2012 3080 21688 150 2 0 212 0 1 126 0 1 226 0 1 97 9 3 13 2 1 156 7 8 73 chain 6342 chr1 248956422 + 229119484 229119567 MER51B 395 + 230 312 79861 15 1 0 67 chain 115474 chr1 248956422 + 229134187 229135671 THE1C-int 1605 + 18 1605 16317 92 0 54 98 0 9 36 1 17 8 0 18 95 10 17 12 0 1 274 1 0 267 0 2 464 2 0 91 4 3 29 chain 37508 chr1 248956422 + 229142354 229143007 MER39B 650 + 0 646 36396 46 1 13 116 0 1 6 6 0 39 17 9 68 2 0 48 16 17 36 5 6 124 26 19 37 37 38 23 chain 39525 chr1 248956422 + 229174257 229174711 LTR7 482 + 0 482 34997 39 1 0 17 2 0 207 1 32 187 chain 4172 chr1 248956422 + 229174728 229174778 LTR7 482 + 431 482 90313 27 0 1 23 chain 298266 chr1 248956422 + 229174780 229178471 HERVH-int 3825 + 0 3825 6881 212 0 11 309 5 0 38 2 1 9 1 0 23 29 1 10 0 17 26 22 0 41 46 1 21 21 0 9 2 1 49 1 0 770 0 1 135 4 31 1029 16 6 341 0 3 25 8 218 487 chain 39702 chr1 248956422 + 229179726 229180176 LTR7 482 + 0 482 34890 263 1 32 65 0 1 121 chain 5979 chr1 248956422 + 229208553 229208645 L1MC 810 + 165 253 81162 18 3 0 25 1 0 45 chain 5930 chr1 248956422 + 229233643 229233895 LTR8A 794 + 546 794 81359 39 161 157 52 chain 19627 chr1 248956422 + 229234656 229235009 MER4A1 472 + 0 284 56882 96 93 4 89 1 0 35 3 24 36 chain 41967 chr1 248956422 + 229264239 229264776 MLT2A2 560 + 0 560 33375 33 0 5 31 0 1 112 0 23 342 6 0 13 chain 33938 chr1 248956422 + 229291843 229292226 L1PA3long 6157 + 5773 6156 38757 383 chain 7641 chr1 248956422 + 229331505 229331658 MER21A 919 + 12 177 75769 69 39 52 24 1 0 20 chain 16342 chr1 248956422 + 229346928 229347230 MER1B 344 + 42 344 60579 12 18 18 12 16 19 113 4 0 45 26 27 56 chain 5205 chr1 248956422 + 229383127 229383188 U6 107 + 0 61 84654 61 chain 42720 chr1 248956422 + 229394498 229395031 L1PA8 5853 + 5320 5847 32935 244 1 0 23 1 2 19 2 0 71 1 0 14 1 0 51 1 0 11 7 6 86 chain 30794 chr1 248956422 + 229412417 229412815 LTR7 482 + 0 482 41311 86 0 50 127 1 32 18 1 0 67 1 5 97 chain 285757 chr1 248956422 + 229412826 229416413 HERVH-int 3825 + 9 3825 7264 203 0 11 222 118 0 87 5 0 38 1 0 10 1 0 23 0 92 83 2 1 97 1 0 809 4 31 356 22 27 44 0 4 221 0 4 38 0 1 5 2 1 46 0 1 656 8 218 260 0 2 225 chain 3093 chr1 248956422 + 229413307 229413359 HERVH-int 3825 + 504 643 98849 26 1 0 11 1 89 13 chain 34813 chr1 248956422 + 229418220 229418665 LTR7 482 + 0 482 38146 245 2 33 35 1 0 63 5 9 84 0 3 10 chain 24187 chr1 248956422 + 229418823 229419181 LTR7B 505 + 64 495 50517 44 0 10 57 0 38 12 21 16 8 0 31 82 1 0 26 0 1 45 9 8 53 chain 12007 chr1 248956422 + 229422228 229422388 L1PA8 5853 + 5699 5853 66828 44 1 0 17 1 0 73 7 3 17 chain 12668 chr1 248956422 + 229504928 229505152 MER30 238 + 0 238 65685 24 11 12 57 34 40 22 1 7 40 0 1 35 chain 64642 chr1 248956422 + 229511462 229512185 L1PA5 6144 + 5409 6132 25285 723 chain 3185 chr1 248956422 + 229537856 229537892 tRNA-Gly-GGY 63 + 0 36 98033 36 chain 7942 chr1 248956422 + 229545732 229545842 Tigger2a 444 + 0 104 75016 97 6 0 7 chain 5479 chr1 248956422 + 229670608 229670692 MER33 330 + 0 85 83313 39 9 10 36 chain 37878 chr1 248956422 + 229696941 229697390 LTR7 482 + 0 477 36159 56 5 1 47 0 1 143 0 31 198 chain 76280 chr1 248956422 + 229706681 229707782 MER11B 1079 + 0 1079 22492 457 18 17 22 24 12 15 0 1 14 11 6 32 18 19 123 1 0 23 10 0 17 27 29 7 0 2 29 0 1 53 0 1 171 1 0 28 chain 25483 chr1 248956422 + 229748833 229749247 L1MA8 2339 + 1760 2153 48509 52 0 1 27 4 0 91 4 0 23 1 0 49 8 7 33 4 12 44 3 1 19 18 0 34 chain 54653 chr1 248956422 + 229788667 229789428 L1PA11 4918 + 3840 4578 27991 66 1 2 420 5 0 65 2 1 13 2 0 50 0 3 12 2 0 17 1 0 12 51 38 15 1 0 13 2 0 11 chain 51553 chr1 248956422 + 229790442 229791027 LTR10C 591 + 0 584 29018 80 1 0 504 chain 5431 chr1 248956422 + 229802146 229802223 L1PB1 5432 + 5344 5418 83552 28 1 0 19 1 0 13 1 0 14 chain 5224 chr1 248956422 + 229823918 229823986 MER101 471 + 8 75 84570 6 1 0 61 chain 23947 chr1 248956422 + 229840099 229840399 L1PB4 2604 + 2072 2374 50869 31 3 5 266 chain 132397 chr1 248956422 + 229865275 229866822 LTR12C 1709 + 0 1709 13791 248 2 4 41 0 1 405 0 159 253 1 0 6 2 0 107 0 4 408 1 0 73 chain 28624 chr1 248956422 + 230018263 230018656 LTR7 482 + 0 474 43912 69 8 46 109 0 1 5 0 31 55 0 10 36 4 5 107 chain 7990 chr1 248956422 + 230026271 230026364 MLT2B1 522 + 21 114 74905 93 chain 3868 chr1 248956422 + 230032389 230032486 MER77 626 + 395 493 92366 23 39 40 35 chain 25704 chr1 248956422 + 230037520 230037854 MER47A 366 + 20 357 48166 282 1 4 51 chain 29225 chr1 248956422 + 230131737 230132209 LTR3B_ 500 + 0 458 43008 14 0 1 61 1 0 175 1 4 44 1 0 33 17 0 4 0 1 11 55 58 36 3 0 16 chain 153655 chr1 248956422 + 230297444 230299144 L1PA3long 6157 + 4457 6157 12134 184 1 0 31 4 3 549 0 1 81 0 1 850 chain 27037 chr1 248956422 + 230393555 230393847 AluYd8 298 + 0 292 46217 292 chain 18927 chr1 248956422 + 230420432 230420799 THE1B 368 + 0 368 57620 15 3 1 31 41 48 16 5 6 24 8 12 16 32 23 176 chain 10651 chr1 248956422 + 230450878 230451385 L1MA3 4352 + 4134 4327 69125 61 308 0 40 4 0 23 1 2 22 1 0 6 6 5 13 9 8 13 chain 5783 chr1 248956422 + 230463623 230463753 L1MC2 1988 + 1865 1982 81997 51 47 34 32 chain 3394 chr1 248956422 + 230486618 230486658 LTR37A 408 + 348 388 96127 40 chain 3580 chr1 248956422 + 230528380 230528432 L1MC2 1988 + 1937 1988 94584 8 1 0 43 chain 17539 chr1 248956422 + 230564246 230564564 THE1C 375 + 0 347 59195 77 7 21 15 0 1 36 19 20 19 41 54 104 chain 27467 chr1 248956422 + 230601215 230601646 LTR7 482 + 0 482 45612 138 74 123 44 0 1 59 1 2 115 chain 282152 chr1 248956422 + 230601648 230605422 HERVH-int 3825 + 0 3825 7370 333 1 0 197 1 0 40 2 1 9 1 0 12 24 12 14 1 0 13 3 0 13 0 39 13 2 1 14 65 0 12 0 1 5 1 0 50 1 0 364 0 10 532 4 31 299 0 10 321 0 2 115 0 1 58 5 6 433 1 0 13 166 1 95 9 11 39 8 218 260 0 2 225 chain 6100 chr1 248956422 + 230689205 230689279 MER2B 336 + 182 256 80726 74 chain 13272 chr1 248956422 + 230716905 230717052 LTR5A 1029 + 0 147 64675 147 chain 5736 chr1 248956422 + 230717053 230717115 LTR5A 1029 - 803 865 82196 62 chain 4734 chr1 248956422 + 230729787 230729874 LTR73 568 + 0 78 87056 43 24 15 20 chain 22078 chr1 248956422 + 230842327 230842698 L1PB1 5432 + 5050 5392 53729 53 1 2 9 3 0 32 1 0 9 7 3 10 2 0 52 2 1 15 1 0 44 1 0 16 1 0 6 16 6 19 2 0 5 1 0 14 2 0 26 1 0 20 chain 10308 chr1 248956422 + 230871830 230872008 MSTC 436 + 0 166 69787 11 1 2 31 0 1 4 8 7 86 11 0 19 2 0 5 chain 14410 chr1 248956422 + 230914187 230914365 Tigger2a 444 + 0 181 63020 102 3 6 73 chain 265090 chr1 248956422 + 231004592 231008162 L1PB2 3958 + 178 3838 7825 49 5 2 116 0 2 109 0 6 7 11 10 122 1 5 38 4 0 168 0 2 150 0 1 45 17 16 254 1 0 5 0 1 47 0 5 240 0 5 176 0 1 3 3 0 123 0 5 35 4 0 356 11 13 122 14 14 52 0 2 295 0 2 142 8 7 40 0 1 91 1 0 25 0 5 66 9 11 80 6 75 38 1 0 4 0 4 6 7 6 4 0 1 10 1 0 5 0 1 35 2 0 12 5 0 18 0 4 67 1 0 77 1 0 62 1 0 74 2 0 22 1 0 63 chain 8075 chr1 248956422 + 231062972 231063075 MLT1B 390 + 75 179 74685 86 0 1 17 chain 30218 chr1 248956422 + 231127287 231127636 L1PA5 6144 + 5780 6130 41831 98 2 1 170 0 2 79 chain 107207 chr1 248956422 + 231127907 231129070 SVA_D 2077 + 42 1740 17414 836 0 535 327 chain 6293 chr1 248956422 + 231317822 231318080 LTR12D 1347 + 716 1197 80027 35 168 391 55 chain 3792 chr1 248956422 + 231439938 231439982 MSTC 436 + 2 46 92909 44 chain 163955 chr1 248956422 + 231447979 231450826 L1PBa 3878 + 1519 3744 11484 93 633 8 200 1 2 9 1 0 16 13 14 61 2 1 449 1 0 4 8 9 313 0 1 13 1 0 33 0 3 48 0 3 242 3 0 11 1 2 167 3 0 126 0 1 340 4 0 9 0 8 10 2 1 21 2 0 7 chain 7868 chr1 248956422 + 231452439 231452532 L1P4 1494 + 201 294 75204 93 chain 129038 chr1 248956422 + 231453533 231455013 SVA_B 1603 + 0 1603 14144 19 25 1 19 1 25 524 0 1 248 2 126 27 1 0 19 2 1 593 chain 26194 chr1 248956422 + 231471681 231471972 L1PA3long 6157 + 5866 6157 47433 291 chain 5303 chr1 248956422 + 231496630 231496692 Tigger6a 1079 + 1017 1079 84187 62 chain 23465 chr1 248956422 + 231542904 231543189 AluSg4 309 + 8 292 51644 115 1 0 169 chain 39331 chr1 248956422 + 231570332 231570777 L1PA2 6032 + 5582 6032 35128 214 0 4 199 1 2 31 chain 74517 chr1 248956422 + 231593303 231594130 L1PA3long 6157 + 5330 6156 22957 822 1 0 4 chain 22031 chr1 248956422 + 231780004 231780250 L1PA2 6032 + 5786 6032 53795 246 chain 4393 chr1 248956422 + 231780274 231780329 MER49 923 + 868 923 88924 55 chain 71408 chr1 248956422 + 231780395 231781172 L1PA2 6032 + 5254 6032 23674 672 0 1 105 chain 26082 chr1 248956422 + 231802160 231802528 THE1D 372 + 0 372 47604 59 0 1 124 19 24 17 1 0 6 1 0 6 0 1 102 1 0 32 chain 3826 chr1 248956422 + 231869381 231869423 Tigger2a 444 + 145 187 92670 42 chain 26359 chr1 248956422 + 231916394 231916677 AluYa5 310 + 22 304 47184 110 1 0 172 chain 309557 chr1 248956422 + 231944787 231948615 L1PA7 6471 + 2651 6470 6622 336 31 12 745 0 2 865 7 13 189 0 1 168 1 0 632 1 0 72 1 5 8 4 0 254 0 10 13 11 4 417 45 45 28 chain 112971 chr1 248956422 + 232006204 232007771 THE1C-int 1605 + 33 1594 16678 5 0 2 13 8 9 48 0 54 281 85 11 292 2 11 538 0 3 77 3 4 176 0 1 14 3 0 22 chain 17082 chr1 248956422 + 232007781 232008109 THE1C 375 + 0 327 59722 14 2 0 49 24 25 21 5 6 5 1 0 8 7 11 39 1 0 8 8 9 33 13 9 90 chain 375894 chr1 248956422 + 232078548 232082861 L1PA5 6144 + 1816 6142 5553 932 0 1 39 2 0 362 0 16 4 1 0 82 0 2 453 2 0 616 7 5 169 0 1 353 0 1 442 1 0 848 chain 40563 chr1 248956422 + 232118114 232118565 LTR7 482 + 0 482 34253 267 0 31 184 chain 298738 chr1 248956422 + 232118567 232122213 HERVH-int 3825 + 0 3816 6869 212 4 15 87 0 1 217 5 0 38 1 0 9 2 1 9 4 0 14 7 1 14 1 0 13 3 0 7 23 0 15 42 0 38 0 20 18 2 1 27 0 3 19 1 0 452 15 0 450 8 35 1404 0 210 124 0 1 361 chain 40797 chr1 248956422 + 232123494 232123945 LTR7 482 + 0 482 34097 230 0 31 221 chain 104123 chr1 248956422 + 232155315 232156576 L1PA7 6471 + 5203 6469 17806 422 17 21 660 16 15 135 0 2 11 chain 48836 chr1 248956422 + 232157975 232158762 L1PA15 4387 + 3548 4327 29998 46 0 1 4 1 0 26 0 9 35 0 1 6 1 0 127 11 9 19 4 0 6 1 0 25 0 4 24 2 0 16 0 2 25 1 0 167 6 5 15 27 26 38 2 1 17 4 0 15 1 0 50 6 3 44 3 1 12 chain 8521 chr1 248956422 + 232162697 232162931 L1MB3 1562 + 1000 1235 73637 43 98 100 54 8 7 31 chain 8847 chr1 248956422 + 232165339 232165488 L1PB3 3668 + 3297 3446 72865 62 5 6 16 13 12 53 chain 76151 chr1 248956422 + 232241444 232242562 L1MA2 4263 + 2990 4114 22525 43 0 1 128 0 7 42 3 6 21 17 10 115 0 3 152 0 14 34 1 0 13 8 6 77 1 0 130 17 14 146 25 23 58 0 1 23 14 7 5 0 1 35 1 0 9 chain 16700 chr1 248956422 + 232317459 232317795 MLT2D 439 + 0 332 60152 34 7 4 7 0 8 14 30 6 36 1 2 27 0 1 59 28 41 42 0 8 5 8 0 38 chain 138935 chr1 248956422 + 232331234 232333103 SVA_D 2077 + 200 2077 13195 518 10 13 35 51 8 34 116 0 85 0 83 27 1 52 201 81 0 101 6 120 65 1 0 420 2 1 96 1 0 18 chain 4124 chr1 248956422 + 232331797 232331848 SVA_D 2077 + 454 581 60492 1 11 87 39 chain 8330 chr1 248956422 + 232331882 232331985 SVA_D 2077 + 615 718 60492 103 chain 6993 chr1 248956422 + 232332312 232332393 SVA_D 2077 + 1383 1481 45526 5 0 1 4 9 8 50 0 17 13 chain 149822 chr1 248956422 + 232343014 232344699 L1PA5 6144 + 4442 6129 12361 685 1 2 175 0 1 824 chain 85885 chr1 248956422 + 232511745 232512806 L1PA8 5853 + 4713 5853 20470 4 0 1 289 0 2 84 0 1 83 0 2 321 0 1 63 1 0 44 2 0 18 2 79 34 3 2 19 1 0 93 chain 20528 chr1 248956422 + 232587696 232588058 THE1B 368 + 0 368 55748 82 34 35 60 61 66 125 chain 19508 chr1 248956422 + 232604627 232605021 MSTA 426 + 9 414 57012 73 4 5 14 7 12 15 124 130 51 1 0 105 chain 19912 chr1 248956422 + 232612862 232613223 THE1A 353 + 0 353 56504 13 2 0 34 0 1 13 38 33 17 0 2 6 20 18 26 12 11 151 1 0 28 chain 15883 chr1 248956422 + 232640118 232640357 Ricksha_0 1343 + 1084 1308 61178 102 3 0 53 6 4 43 2 0 6 10 2 14 chain 14233 chr1 248956422 + 232671467 232671781 L1MA3 4352 + 4063 4352 63282 30 26 11 98 1 3 22 6 3 28 2 0 24 55 48 22 chain 36158 chr1 248956422 + 232748798 232749371 LTR10B1 532 + 0 532 37311 17 18 19 138 8 0 16 14 0 13 35 17 11 4 2 299 chain 51823 chr1 248956422 + 232749976 232750762 Tigger3b 1229 + 352 1165 28933 27 0 1 188 5 16 109 0 1 83 1 0 84 37 48 18 35 33 80 0 2 34 0 1 68 3 6 14 chain 123525 chr1 248956422 + 232823587 232824915 L1PA2 6032 + 4704 6032 14929 1328 chain 24333 chr1 248956422 + 232828552 232828845 L1PB1 5432 + 3408 3701 50278 293 chain 11457 chr1 248956422 + 232910949 232911112 MER30 238 + 61 238 67819 43 4 0 9 4 25 56 3 0 44 chain 19166 chr1 248956422 + 232992693 232993033 THE1D 372 + 19 370 57380 83 4 3 40 69 79 85 0 3 28 1 0 30 chain 161044 chr1 248956422 + 233002289 233004146 L1PA7 6471 + 4592 6466 11682 260 0 1 102 7 8 651 0 3 699 1 0 78 9 22 50 chain 123037 chr1 248956422 + 233047615 233051684 L1PA16 3655 + 6 3578 15019 17 1 0 12 0 3 13 2 0 49 56 48 147 0 2 77 16 15 143 2097 1623 20 11 16 37 6 5 23 24 22 45 0 1 108 2 0 202 5 0 4 0 1 7 6 18 13 1 0 44 0 1 78 0 1 76 9 10 4 1 0 12 2 1 18 1 0 63 1 0 97 3 0 3 14 0 119 2 0 43 23 22 21 2 0 85 2 1 202 chain 19362 chr1 248956422 + 233050023 233050245 L1PA7 6471 + 6245 6467 57169 222 chain 7392 chr1 248956422 + 233070469 233070700 L1MD1 2063 + 110 333 76410 5 0 1 45 0 2 4 1 0 17 1 0 15 41 39 18 47 48 9 8 0 20 chain 29182 chr1 248956422 + 233074312 233074623 AluYa5 310 + 0 310 43080 132 1 0 178 chain 41426 chr1 248956422 + 233107780 233108300 MER41A 554 + 33 554 33718 197 0 1 323 chain 28380 chr1 248956422 + 233169364 233169660 AluYg6 310 + 0 296 44301 296 chain 49795 chr1 248956422 + 233177043 233177609 LTR10C 591 + 3 570 29639 554 0 1 12 chain 21452 chr1 248956422 + 233224823 233225114 L1PA8 5853 + 5567 5853 54583 43 2 0 72 1 0 6 6 5 47 2 1 21 1 0 81 0 1 9 chain 10810 chr1 248956422 + 233259890 233260081 MER2 342 + 132 320 68836 130 38 36 17 1 0 5 chain 76929 chr1 248956422 + 233272015 233273142 L1PB1 5432 + 4341 5427 22338 146 9 8 74 3 4 41 0 1 6 5 0 482 1 0 11 3 0 24 1 0 8 1 0 12 5 1 9 2 0 49 5 4 15 1 0 45 1 0 15 1 0 4 19 8 19 2 0 5 2 1 13 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 75064 chr1 248956422 + 233323441 233324597 Tigger1 2417 + 54 1258 22829 29 7 8 21 1 0 44 0 1 84 1 0 15 88 97 4 1 0 21 0 2 178 5 9 15 0 5 203 0 14 8 1 0 47 0 3 177 0 3 5 8 16 44 17 19 132 chain 141963 chr1 248956422 + 233344107 233345726 L1PA6 6164 + 4530 6149 12941 1619 chain 24772 chr1 248956422 + 233357123 233357414 L1PA5 6144 + 5853 6144 49631 291 chain 23871 chr1 248956422 + 233466357 233466647 LTR12D 1347 + 857 1347 50996 72 0 200 218 chain 42298 chr1 248956422 + 233471573 233472497 MER41A 554 + 4 552 33192 174 6 7 232 381 0 45 4 9 4 1 0 77 chain 17944 chr1 248956422 + 233471990 233472357 LTR7 482 + 0 475 58708 23 38 111 73 20 21 25 10 41 13 1 2 56 4 5 49 13 14 42 chain 9865 chr1 248956422 + 233486880 233487079 HERV35I-int 1679 + 564 742 70692 36 1 0 12 3 0 13 51 35 37 1 0 45 chain 5954 chr1 248956422 + 233623303 233623380 L1MA5A 2387 + 2230 2306 81261 66 1 0 10 chain 10687 chr1 248956422 + 233688637 233688755 HERVH-int 3825 + 28 146 69069 118 chain 57736 chr1 248956422 + 233724069 233724887 LTR12D 1347 + 405 1347 27038 131 0 31 19 9 8 84 25 0 10 0 18 88 0 8 124 3 2 36 0 1 30 6 1 26 3 0 22 0 101 202 chain 33189 chr1 248956422 + 233785073 233785520 L1PA8 5853 + 5410 5853 39365 110 3 5 39 1 0 44 2 0 75 6 5 52 7 6 14 1 0 93 chain 53105 chr1 248956422 + 233793252 233794033 L1PA13 3608 + 2705 3477 28540 107 9 11 75 13 14 248 1 0 19 0 3 91 1 0 3 1 0 45 19 18 52 11 5 48 8 4 18 1 0 11 chain 531633 chr1 248956422 + 233821973 233828387 L1PA7 6471 + 0 6470 1769 405 15 0 484 0 9 665 1 0 205 3 2 327 0 3 124 0 1 132 0 39 71 6 0 11 0 1 160 0 2 245 0 4 206 0 4 134 9 13 302 9 13 19 0 3 50 0 1 70 0 1 130 1 0 661 0 1 4 2 1 1207 0 1 392 2 0 6 0 2 241 0 3 115 chain 16831 chr1 248956422 + 233836801 233837160 L1PB1 5432 + 5105 5430 60002 9 3 0 24 1 0 6 4 3 11 5 1 8 2 0 53 6 5 11 1 0 44 1 0 16 2 0 9 14 6 16 2 0 5 1 0 10 6 4 24 1 0 21 4 3 10 1 0 18 2 0 8 chain 44089 chr1 248956422 + 233838201 233838742 L1PA7 6471 + 5925 6470 32089 440 1 0 32 0 2 5 2 1 50 0 4 11 chain 6079 chr1 248956422 + 233849445 233849736 L1MD1 2063 + 1563 1856 80803 37 0 1 29 167 171 18 19 16 21 chain 29574 chr1 248956422 + 233890346 233890723 THE1C 375 + 0 375 42512 125 3 0 14 0 1 36 0 1 173 1 0 25 chain 51569 chr1 248956422 + 233930909 233931536 L1PA7 6471 + 5080 5700 29006 128 0 1 56 0 1 351 22 13 70 chain 64211 chr1 248956422 + 233931537 233932301 L1PA7 6471 + 5704 6465 25369 544 0 1 19 4 0 197 chain 26580 chr1 248956422 + 233943902 233944289 L1PREC2 3366 + 933 1324 46858 171 5 6 55 0 1 4 7 6 71 16 16 43 0 3 15 chain 17402 chr1 248956422 + 233951217 233951549 Tigger3c 601 + 60 410 59348 51 19 43 158 32 22 19 10 0 10 21 35 12 chain 22910 chr1 248956422 + 233971434 233971734 AluSg7 307 + 1 297 52498 21 10 4 105 0 1 6 1 2 157 chain 5016 chr1 248956422 + 234017750 234017820 MADE1 96 + 5 91 85583 37 1 17 32 chain 13463 chr1 248956422 + 234145600 234145818 MER2 342 + 94 329 64368 15 1 0 41 0 15 53 6 7 36 9 10 10 0 1 47 chain 28855 chr1 248956422 + 234176974 234177346 THE1B 368 + 0 368 43548 172 2 1 19 2 0 102 1 0 74 chain 395937 chr1 248956422 + 234188755 234194581 L1PB1 5432 + 11 5418 5218 11 6 0 229 5 0 14 1 0 138 22 11 35 19 22 73 4 3 6 0 1 173 0 1 34 19 15 52 5 8 223 6 7 162 0 2 173 13 18 324 0 4 17 3 0 77 0 4 127 1 0 45 381 0 40 1 2 175 16 18 52 1 0 187 7 0 184 3 0 164 3 0 107 0 1 56 1 2 6 1 0 45 18 23 101 0 2 208 0 6 215 0 1 111 6 1 34 0 3 207 0 4 575 1 0 9 11 12 55 3 0 170 1 0 108 19 9 138 1 0 43 9 19 25 1 0 8 1 0 10 24 19 32 0 1 5 2 0 7 3 2 14 1 0 45 1 0 15 24 12 19 2 0 5 9 8 6 2 0 23 2 1 21 1 0 13 1 0 14 chain 23204 chr1 248956422 + 234209959 234210290 THE1B 368 + 1 354 52077 43 6 21 101 10 9 131 5 13 35 chain 25399 chr1 248956422 + 234211877 234212223 THE1B 368 + 0 368 48623 44 0 6 6 0 9 98 10 9 134 5 13 49 chain 70615 chr1 248956422 + 234301283 234302149 L1PA8A 6298 + 5420 6290 23842 69 1 4 87 1 0 132 0 2 576 chain 53538 chr1 248956422 + 234399443 234400046 L1PA3long 6157 + 5554 6157 28383 102 0 1 358 1 0 142 chain 5307 chr1 248956422 + 234407143 234407208 MER21A 919 + 11 76 84162 65 chain 22558 chr1 248956422 + 234422386 234422887 L1MA3 4352 + 3882 4352 53031 172 138 106 7 0 7 28 1 3 47 9 7 6 0 1 16 1 0 6 1 0 26 1 0 14 1 0 4 7 4 16 chain 28093 chr1 248956422 + 234451465 234451766 AluYa5 310 + 0 299 44730 97 1 0 35 1 0 167 chain 7045 chr1 248956422 + 234485449 234485715 MER1B 344 + 0 344 77458 23 131 80 31 22 152 25 1 0 33 chain 40215 chr1 248956422 + 234493127 234493658 MER41A 554 + 0 554 34512 187 0 10 230 0 1 40 11 16 40 0 7 23 chain 4260 chr1 248956422 + 234506181 234506243 L1PB1 5432 + 5337 5395 89758 9 2 0 24 1 0 21 1 0 4 chain 10321 chr1 248956422 + 234641843 234642008 L1PA17 2846 + 2529 2691 69760 4 1 0 59 11 8 32 1 0 17 1 0 23 0 3 16 chain 36305 chr1 248956422 + 234664585 234665072 MER1A 529 + 37 529 37211 202 0 4 85 10 6 118 4 0 6 2 10 49 0 1 11 chain 31177 chr1 248956422 + 234803657 234804066 MSTA 426 + 0 409 40996 41 3 4 85 1 0 279 chain 6876 chr1 248956422 + 234837972 234838070 HY4 93 + 0 90 78047 70 8 0 20 chain 25380 chr1 248956422 + 234888359 234888713 THE1B 368 + 0 368 48653 33 0 5 131 1 0 32 1 2 11 0 4 22 1 0 55 0 1 10 1 6 56 chain 3726 chr1 248956422 + 234924587 234924628 MER58A 224 + 46 87 93435 41 chain 33735 chr1 248956422 + 234942985 234943461 MER51E 476 + 0 476 38893 285 12 22 59 0 1 34 13 8 6 2 0 12 4 0 49 chain 7007 chr1 248956422 + 234985849 234985933 LTR54 533 + 0 84 77581 84 chain 12929 chr1 248956422 + 235108459 235108662 MER30 238 + 0 238 65202 15 14 32 45 6 25 73 2 0 48 chain 148281 chr1 248956422 + 235140103 235141979 LTR12C 1709 + 0 1709 12469 209 0 2 76 9 0 550 161 0 273 1 0 7 3 1 106 0 4 481 chain 11882 chr1 248956422 + 235140948 235141108 LTR12C 1709 + 837 997 46636 160 chain 151091 chr1 248956422 + 235308446 235310193 SVA_D 2077 + 0 2077 12282 20 1 7 743 40 0 126 14 156 8 0 1 5 1 2 108 0 225 357 4 0 310 1 0 9 chain 27849 chr1 248956422 + 235340460 235340758 AluY 311 + 6 305 45106 126 0 1 172 chain 29208 chr1 248956422 + 235349113 235349418 AluYa5 310 + 1 306 43034 305 chain 4183 chr1 248956422 + 235452489 235452541 Tigger4a 237 + 0 52 90246 52 chain 33244 chr1 248956422 + 235462790 235463367 L1PB1 5432 + 4860 5423 39306 97 5 23 4 1 0 103 0 4 12 1 2 9 7 0 24 8 6 14 16 11 51 2 1 15 1 0 45 1 0 14 4 0 6 1 0 12 27 19 14 2 0 24 1 0 22 1 0 12 1 0 10 1 0 9 chain 6572 chr1 248956422 + 235464785 235464871 L1MB7 1623 + 1090 1175 79066 32 1 0 53 chain 22181 chr1 248956422 + 235476125 235476407 AluSc8 310 + 0 281 53595 48 5 1 83 0 3 146 chain 3188 chr1 248956422 + 235525625 235525661 Arthur1A 176 + 9 45 98012 36 chain 4299 chr1 248956422 + 235527499 235527568 MER63B 433 + 312 380 89508 19 10 9 40 chain 14354 chr1 248956422 + 235533816 235534012 Tigger2a 444 + 1 195 63106 72 5 6 62 3 0 54 chain 23394 chr1 248956422 + 235591902 235592223 LTR39 781 + 43 359 51770 52 14 10 93 1 0 161 chain 3221 chr1 248956422 + 235615318 235615359 MLT1D 503 + 296 337 97720 41 chain 9437 chr1 248956422 + 235676284 235676457 LTR54B 464 + 0 190 71622 86 19 16 17 14 34 37 chain 47743 chr1 248956422 + 235699849 235700442 L1PA8 5853 + 4456 5054 30381 255 0 2 141 0 5 151 10 8 36 chain 16156 chr1 248956422 + 235783426 235783646 L1PA8 5853 + 5637 5853 60802 45 1 0 8 1 0 5 2 1 44 2 1 19 1 0 83 0 1 9 chain 66261 chr1 248956422 + 235786317 235787060 L1PA5 6144 + 5402 6140 24890 611 0 1 115 6 0 11 chain 24412 chr1 248956422 + 235815549 235815850 L1PA15 4387 + 2785 3086 50149 301 chain 414901 chr1 248956422 + 235846091 235851546 L1PB1 5432 + 19 5424 4961 33 0 10 9 17 8 529 2 0 332 0 1 454 1 0 7 2 0 5 26 13 174 1 7 52 0 5 185 0 4 42 1 6 88 0 1 392 0 8 104 4 0 301 0 9 34 2 0 54 0 3 124 1 0 252 0 1 425 2 1 44 7 1 228 0 1 344 1 0 229 2 1 77 4 5 392 1 5 84 31 0 14 13 10 7 1 0 13 16 11 11 3 1 50 2 1 16 1 0 33 0 1 10 1 0 6 33 21 6 1 0 13 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 3690 chr1 248956422 + 235862967 235863008 LTR54 533 + 492 533 93676 41 chain 24165 chr1 248956422 + 235898625 235898972 LTR24C 604 + 0 476 50553 77 16 30 191 0 1 13 1 115 49 chain 46932 chr1 248956422 + 235903736 235904353 L1PA8 5853 + 5244 5853 30687 320 1 0 46 3 1 67 2 1 9 21 19 33 2 1 19 1 0 93 chain 8951 chr1 248956422 + 235915414 235915521 U6 107 + 0 107 72668 107 chain 39696 chr1 248956422 + 235915527 235915998 L1PA7 6471 + 5985 6461 34895 201 1 0 127 1 7 141 chain 399593 chr1 248956422 + 235962527 235968630 L1PB1 5432 + 77 5420 5160 468 2 0 102 1 2 113 7 6 480 0 1 139 47 30 49 9 10 67 1 5 4 1 0 33 7 0 14 1 6 22 305 0 7 2 1 266 0 3 115 3 4 40 7 9 418 2 0 5 5 14 6 7 0 326 2 0 59 4 0 292 5 4 68 0 1 393 0 1 31 11 9 28 4 6 272 0 1 56 11 16 412 0 1 120 1 0 14 3 0 32 0 3 136 329 18 169 0 3 105 130 22 24 1 0 8 1 0 12 4 0 9 2 0 53 22 20 59 2 0 12 9 0 16 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 5274 chr1 248956422 + 235972362 235972455 MER57B1 401 + 0 105 84322 26 4 8 34 5 13 24 chain 27825 chr1 248956422 + 236000259 236000632 MER4B 649 + 208 572 45142 159 0 4 49 21 8 144 chain 4267 chr1 248956422 + 236139364 236139436 MADE1 96 + 9 96 89725 40 9 24 23 chain 27746 chr1 248956422 + 236161555 236161914 THE1A 353 + 0 353 45257 109 2 1 88 4 0 80 1 0 75 chain 127379 chr1 248956422 + 236161914 236163473 THE1A-int 1579 + 0 1579 14377 15 0 2 36 0 1 41 0 1 294 1 2 238 15 30 919 chain 27851 chr1 248956422 + 236163473 236163830 THE1A 353 + 0 353 45104 81 0 3 6 3 0 21 1 0 91 3 0 151 chain 10700 chr1 248956422 + 236267783 236267937 U2 167 + 0 159 69043 40 0 11 79 2 0 8 8 4 17 chain 7867 chr1 248956422 + 236287768 236287862 MER107 203 + 66 160 75213 94 chain 3361 chr1 248956422 + 236300978 236301049 U13_ 108 + 0 71 96473 32 1 0 5 16 17 17 chain 18437 chr1 248956422 + 236312514 236312754 MER2 342 + 89 329 58186 27 1 0 58 0 1 154 chain 44386 chr1 248956422 + 236314209 236314744 MER41A 554 + 0 535 31890 42 0 1 354 1 0 138 chain 49361 chr1 248956422 + 236315612 236316337 LTR8 732 + 0 717 29814 145 1 0 230 3 1 95 34 35 11 5 1 12 1 0 4 3 4 111 2 0 18 0 1 31 1 0 18 chain 19993 chr1 248956422 + 236339898 236340418 L1MA4 2864 + 2307 2801 56396 19 4 0 8 10 7 135 25 24 11 4 16 82 163 135 20 6 4 33 chain 23150 chr1 248956422 + 236351437 236351727 AluSc 308 + 0 298 52141 53 7 15 230 chain 3061 chr1 248956422 + 236355927 236355960 MER4E1 777 + 663 696 99213 33 chain 5601 chr1 248956422 + 236357154 236357222 Charlie1a 1436 + 320 388 82804 68 chain 5315 chr1 248956422 + 236371048 236371109 LTR47A 437 + 357 418 84118 61 chain 166246 chr1 248956422 + 236385951 236388019 SVA_F 1814 + 10 1814 11324 892 274 0 45 0 15 39 1 0 4 1 0 172 1 0 10 1 0 284 1 0 343 chain 14552 chr1 248956422 + 236386877 236387094 SVA_F 1814 + 937 1168 45138 10 1 15 206 chain 9549 chr1 248956422 + 236390058 236390273 L1PB1 5432 + 5200 5395 71370 20 2 1 15 5 4 41 1 0 15 3 1 14 8 0 11 29 24 24 1 0 21 1 0 4 chain 15102 chr1 248956422 + 236478884 236479149 L1PB1 5432 + 5172 5416 62150 48 2 1 16 1 0 43 1 0 16 26 15 10 0 1 5 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 12 chain 88668 chr1 248956422 + 236504497 236505526 LTR5A 1029 + 0 1029 19911 147 1 0 724 2 3 155 chain 5088 chr1 248956422 + 236658473 236658536 MLT1A 405 + 294 357 85205 63 chain 19277 chr1 248956422 + 236710626 236710965 MER1B 344 + 30 344 57264 56 44 17 73 21 23 68 7 8 54 1 0 15 chain 24281 chr1 248956422 + 236790858 236791152 AluSc5 308 + 0 291 50368 64 2 0 94 2 0 120 0 1 12 chain 23056 chr1 248956422 + 236791300 236791718 MER4E 760 + 389 760 52283 18 1 0 3 1 0 20 13 17 63 61 41 22 29 0 187 chain 29104 chr1 248956422 + 236919301 236919739 MLT2A1 477 + 0 477 43182 135 0 5 29 4 1 11 0 1 22 1 0 118 12 13 34 9 6 10 5 0 7 8 48 27 0 4 6 chain 2874 chr1 248956422 + 236983432 236983462 LTR16A 446 + 314 344 101049 30 chain 565912 chr1 248956422 + 237075264 237081293 L1HS 6032 + 2 6032 70 1118 0 1 4911 chain 8008 chr1 248956422 + 237090259 237090357 MLT1D 503 + 29 135 74867 91 0 8 7 chain 22135 chr1 248956422 + 237107278 237107536 AluY 311 + 39 299 53650 93 0 1 74 1 2 90 chain 19087 chr1 248956422 + 237145005 237145230 L1PA7 6471 + 6247 6470 57456 68 1 0 5 1 0 150 chain 18802 chr1 248956422 + 237148248 237148519 L1PA8 5853 + 5587 5853 57778 22 2 0 69 2 1 12 3 0 8 6 9 32 2 1 19 1 0 93 chain 5543 chr1 248956422 + 237274265 237274330 Tigger3c 601 + 39 104 83062 65 chain 17952 chr1 248956422 + 237274350 237274913 Tigger3 1187 + 492 1058 58700 12 12 14 19 1 0 37 104 110 64 4 2 40 14 18 46 0 1 30 143 136 37 chain 8647 chr1 248956422 + 237310365 237310748 MER4C 627 + 65 627 73360 19 1 0 32 144 326 14 11 12 22 78 75 62 chain 34457 chr1 248956422 + 237371666 237372064 L1PA5 6144 + 5753 6144 38392 311 7 0 80 chain 24051 chr1 248956422 + 237488519 237488901 LTR7B 505 + 0 505 50724 20 14 18 67 0 10 56 12 81 37 2 1 21 0 41 89 14 13 20 0 1 30 chain 365749 chr1 248956422 + 237603470 237607585 L1PA5 6144 + 2022 6144 5726 193 0 2 92 0 4 693 0 1 1067 6 12 1129 8 0 159 0 2 40 0 1 582 1 0 145 chain 11723 chr1 248956422 + 237622341 237622525 Tigger4b 360 + 42 249 67361 59 23 46 102 chain 27290 chr1 248956422 + 237661196 237661501 L1PA7 6471 + 6160 6465 45837 305 chain 44731 chr1 248956422 + 237728387 237728947 L1PA8 5853 + 5298 5851 31733 223 1 0 41 1 0 38 10 8 70 2 1 60 3 2 19 1 0 91 chain 517291 chr1 248956422 + 237820225 237826650 L1PA7 6471 + 0 6466 2411 196 9 8 195 4 6 214 6 7 152 2 0 89 0 6 6 6 0 330 4 8 634 0 1 185 4 0 598 7 0 69 0 4 135 0 1 58 0 2 196 1 3 287 1 0 4 0 1 108 1 0 82 0 2 248 0 1 68 0 1 381 1 0 235 0 6 149 0 4 42 0 5 647 1 0 174 5 4 64 1 0 92 4 7 367 25 26 29 1 0 133 7 17 22 0 14 5 2 1 53 2 0 84 chain 41536 chr1 248956422 + 237843695 237844664 L1PA14 3548 + 2748 3440 33658 190 21 15 30 256 4 14 2 0 4 2 0 14 4 3 17 0 2 9 2 0 61 14 10 10 2 0 5 2 1 84 1 0 11 7 11 87 1 0 13 6 2 32 5 3 13 1 0 3 1 0 21 1 0 23 chain 38118 chr1 248956422 + 237868245 237868713 L1PA7 6471 + 5998 6468 35975 315 5 6 90 0 1 58 chain 90261 chr1 248956422 + 237915278 237916282 LTR13 1007 + 4 1007 19634 300 1 0 703 chain 6042 chr1 248956422 + 237942561 237942633 tRNA-Gln-CAA_ 72 + 0 72 80922 72 chain 22155 chr1 248956422 + 237988685 237988945 L1PA5 6144 + 5883 6142 53630 243 1 0 16 chain 9220 chr1 248956422 + 237997384 237997510 MER85 139 + 0 137 72077 96 0 6 6 3 8 21 chain 8381 chr1 248956422 + 238002142 238002239 L1PA7 6471 + 4399 4496 73942 97 chain 76126 chr1 248956422 + 238002240 238003149 L1PA7 6471 + 4496 5399 22533 111 2 0 137 5 0 274 0 1 61 1 0 138 0 1 180 chain 87228 chr1 248956422 + 238003157 238004181 L1PA7 6471 + 5421 6452 20187 201 0 2 232 0 4 445 8 0 8 0 9 130 chain 22657 chr1 248956422 + 238019569 238019867 AluSp 311 + 8 298 52891 112 7 0 156 3 2 20 chain 324548 chr1 248956422 + 238035048 238045903 L1PB1 5432 + 84 5404 6323 19 14 16 71 1 0 437 24 28 734 42 29 196 0 1 373 6304 818 36 11 1 45 1 4 512 0 1 331 13 1 211 6 7 7 0 1 83 0 1 257 0 1 180 12 13 119 4 5 296 0 1 111 7 0 3 0 7 62 16 14 22 1 0 5 20 15 9 2 0 52 1 0 12 7 6 44 1 0 15 1 0 5 20 10 16 8 5 12 2 0 26 1 0 21 1 0 13 chain 23472 chr1 248956422 + 238130528 238130894 THE1D 372 + 0 372 51633 188 50 58 87 8 6 33 chain 19786 chr1 248956422 + 238206808 238207097 L1PA8 5853 + 5586 5853 56692 25 2 0 68 1 0 9 1 0 55 1 0 20 1 0 11 24 8 71 chain 94582 chr1 248956422 + 238208911 238209952 L1PA3long 6157 + 5113 6153 18956 169 1 0 871 chain 18373 chr1 248956422 + 238212425 238212706 MER1B 344 + 60 344 58272 207 49 52 25 chain 13401 chr1 248956422 + 238239606 238239849 Tigger3a 397 + 27 326 64472 21 61 113 147 1 5 13 chain 2906 chr1 248956422 + 238261048 238261084 MLT1A1 405 + 369 405 100800 36 chain 26641 chr1 248956422 + 238318068 238318436 THE1C 375 + 0 372 46767 64 11 12 171 5 9 94 1 0 22 chain 5256 chr1 248956422 + 238331027 238331110 MER58A 224 + 47 117 84415 16 0 1 29 14 0 24 chain 50835 chr1 248956422 + 238354481 238355337 LTR12 884 + 0 884 29264 163 1 150 27 4 5 32 2 0 34 6 5 28 5 1 10 5 9 101 126 0 179 4 12 45 1 0 83 chain 3451 chr1 248956422 + 238354927 238354965 LTR12 884 + 570 608 95644 38 chain 17091 chr1 248956422 + 238355484 238355726 Tigger2 2703 + 2272 2523 59710 171 0 7 10 17 19 44 chain 3095 chr1 248956422 + 238431849 238431884 L1PBb 2709 - 874 909 98828 35 chain 6126 chr1 248956422 + 238469713 238469789 THE1B 368 + 232 306 80631 55 3 1 18 chain 25527 chr1 248956422 + 238502522 238502808 L1PA3long 6157 + 5869 6156 48443 133 0 1 153 chain 26314 chr1 248956422 + 238623772 238624075 L1PA7 6471 + 6173 6470 47248 289 6 0 8 chain 59859 chr1 248956422 + 238689321 238689956 L1HS 6032 + 5141 5776 26410 635 chain 24866 chr1 248956422 + 238729173 238729474 L1PA6 6164 + 5860 6161 49499 301 chain 133394 chr1 248956422 + 238854136 238855760 L1PA7 6471 + 4843 6469 13702 749 1 2 23 5 4 377 2 4 467 chain 57934 chr1 248956422 + 238855760 238856538 L1PA8A 6298 + 5509 6289 26864 33 0 1 427 2 0 5 7 9 194 0 16 6 20 5 84 chain 63099 chr1 248956422 + 238878441 238879325 L1PB1 5432 + 3572 4483 25602 69 0 1 86 6 9 38 0 1 36 0 9 130 0 16 197 0 4 30 37 12 6 0 4 107 1 14 104 1 2 36 chain 38891 chr1 248956422 + 238880963 238881469 L1PA8 5853 + 5352 5853 35438 171 0 1 38 1 0 46 2 0 18 1 2 51 1 0 11 1 0 54 2 1 15 1 0 93 chain 99562 chr1 248956422 + 238903673 238904767 L1PA3long 6157 + 5063 6157 18349 1094 chain 133487 chr1 248956422 + 238904767 238906409 L1PA6 6164 + 4519 6161 13692 130 1 0 151 0 2 7 2 0 6 9 0 93 6 7 1224 0 9 13 chain 19906 chr1 248956422 + 239001619 239001997 THE1D 372 + 0 372 56526 15 0 2 28 29 0 9 14 25 71 42 44 44 2 8 45 0 2 79 chain 11238 chr1 248956422 + 239002212 239002410 MER30 238 + 0 218 68183 18 12 20 64 7 0 11 7 30 23 1 0 33 3 0 19 chain 27068 chr1 248956422 + 239030860 239031246 LTR7 482 + 0 466 46172 69 8 46 108 9 41 43 7 17 142 chain 83338 chr1 248956422 + 239038983 239040033 HERVL-int 5654 + 4593 5645 20958 230 0 1 5 4 3 238 5 6 73 0 5 275 4 0 216 chain 38617 chr1 248956422 + 239040042 239040583 MLT2A2 560 + 0 560 35631 146 0 1 17 24 28 203 11 24 46 0 1 94 chain 9288 chr1 248956422 + 239060994 239061112 LTR9B 643 + 445 561 71933 53 2 0 63 chain 295243 chr1 248956422 + 239101621 239105401 HERVH-int 3825 + 0 3825 6975 376 0 2 139 0 1 14 9 4 34 1 0 10 1 0 24 43 14 13 3 0 29 124 0 37 1 0 82 1 0 444 15 0 206 9 0 29 0 2 10 1 0 216 0 5 88 0 1 226 0 4 81 3 8 971 9 11 39 8 218 260 0 2 35 6 7 183 chain 3435 chr1 248956422 + 239102372 239102416 HERVH-int 3825 + 673 716 95782 24 1 0 19 chain 26850 chr1 248956422 + 239106662 239107062 LTR7 482 + 0 482 46473 69 8 46 109 8 40 13 3 0 5 0 3 29 0 10 95 12 14 49 chain 38605 chr1 248956422 + 239121242 239121689 L1PA5 6144 + 5698 6144 35637 193 1 0 253 chain 25855 chr1 248956422 + 239166173 239166478 L1PA6 6164 + 5857 6162 47933 305 chain 31760 chr1 248956422 + 239199891 239200319 LTR2 463 + 0 451 40530 162 8 29 148 0 1 22 12 13 76 chain 3258 chr1 248956422 + 239238503 239238545 L1ME1 1623 + 1232 1274 97385 42 chain 24399 chr1 248956422 + 239373676 239373962 L1PA7 6471 + 6184 6468 50170 275 2 0 9 chain 24308 chr1 248956422 + 239423802 239424082 AluY 311 + 29 310 50318 103 0 1 177 chain 5231 chr1 248956422 + 239426328 239426400 MER63B 433 + 315 386 84541 32 2 1 38 chain 3992 chr1 248956422 + 239470033 239470413 MLT1C 463 + 63 436 91506 26 315 308 39 chain 27683 chr1 248956422 + 239499641 239500000 L1PBa 3878 + 1190 1539 45345 105 10 0 244 chain 300006 chr1 248956422 + 239500000 239505043 L1PB1 5432 + 1321 5413 6830 34 615 0 39 2 1 14 79 56 72 0 4 73 0 1 333 4 5 241 0 4 55 303 0 241 9 1 347 2 0 288 2 0 5 1 28 569 1 0 93 0 4 144 31 25 213 1 0 93 0 1 150 0 3 13 0 4 30 4 5 116 11 0 77 0 2 25 0 1 283 0 2 82 6 7 12 4 1 20 1 0 9 16 11 9 2 0 53 2 1 16 1 0 44 1 0 15 3 0 14 9 0 17 8 5 14 2 0 24 1 0 21 1 0 13 1 0 9 chain 3753 chr1 248956422 + 239684287 239684336 MER20 218 + 143 192 93216 38 1 0 6 0 1 4 chain 22444 chr1 248956422 + 239697131 239697436 THE1B 368 + 0 326 53208 44 0 15 110 1 0 50 4 6 47 10 16 5 1 0 33 chain 26618 chr1 248956422 + 239789912 239790288 THE1B-int 1605 + 1246 1599 46805 98 2 5 52 26 0 198 chain 3764 chr1 248956422 + 239874998 239875048 MADE1 96 + 31 96 93114 14 0 15 36 chain 7046 chr1 248956422 + 239922092 239922170 MLT2A1 477 + 399 477 77457 78 chain 12863 chr1 248956422 + 239940667 239940920 LTR47A 437 + 0 249 65323 116 16 6 39 54 60 28 chain 26397 chr1 248956422 + 239978657 239979009 THE1B 368 + 0 367 47125 11 1 2 26 1 16 119 1 0 4 0 1 5 1 0 183 chain 121316 chr1 248956422 + 239979022 239980586 THE1B-int 1605 + 13 1605 15293 419 8 33 229 1 2 6 1 0 45 0 1 103 7 8 9 1 2 213 0 1 144 0 1 56 3 0 251 0 1 58 0 1 4 1 0 5 chain 25091 chr1 248956422 + 239980587 239980940 THE1B 368 + 1 368 49130 43 0 15 56 0 11 5 11 0 36 2 0 5 11 12 184 chain 40419 chr1 248956422 + 240065961 240066424 LTR2 463 + 0 463 34368 463 chain 116192 chr1 248956422 + 240077494 240078963 THE1B-int 1605 + 92 1600 16189 212 5 6 120 0 25 80 0 1 51 0 1 82 8 7 11 12 11 4 0 1 41 0 11 441 0 1 402 chain 4171 chr1 248956422 + 240196448 240196499 MER5A 189 + 85 136 90319 51 chain 5453 chr1 248956422 + 240341409 240341475 HY1 111 + 45 111 83441 66 chain 36648 chr1 248956422 + 240415111 240415541 L1PA7 6471 + 6035 6470 36984 101 0 1 277 0 4 52 chain 4008 chr1 248956422 + 240447607 240447657 MADE1 96 + 45 96 91390 9 0 1 41 chain 5425 chr1 248956422 + 240489576 240489641 MER41B 635 + 481 547 83584 27 0 1 38 chain 6146 chr1 248956422 + 240511316 240511397 MER2 342 + 131 213 80545 4 0 1 77 chain 22652 chr1 248956422 + 240537509 240537788 AluSc 308 + 0 284 52895 15 0 7 42 2 0 220 chain 43094 chr1 248956422 + 240604792 240605307 LTR10C 591 + 0 591 32719 13 1 0 81 0 2 10 0 72 322 7 10 81 chain 118032 chr1 248956422 + 240679061 240680641 L1PA11 4918 + 2744 4361 15880 26 2 1 41 37 32 73 1 0 4 0 2 227 0 6 42 0 1 40 0 1 15 0 9 25 0 1 74 0 6 295 6 7 406 3 17 215 0 4 17 1 0 30 chain 6384 chr1 248956422 + 240698335 240698427 HY1 111 + 16 111 79733 39 5 8 48 chain 19998 chr1 248956422 + 240751828 240752194 THE1D 372 + 0 369 56388 51 49 37 16 0 1 56 20 26 6 0 3 29 8 14 101 1 0 29 chain 116597 chr1 248956422 + 240762307 240763695 LTR12C 1709 + 0 1709 16120 262 0 1 47 0 1 231 0 1 185 1 164 180 1 50 102 0 4 168 0 102 211 chain 3906 chr1 248956422 + 240763780 240763823 LTR7 482 + 439 482 92075 43 chain 3711 chr1 248956422 + 240786655 240786697 MER66B 489 + 295 337 93530 42 chain 94443 chr1 248956422 + 240789010 240790081 MER11C 1089 + 0 1073 18972 316 0 1 282 0 1 473 chain 28774 chr1 248956422 + 240857738 240858110 THE1C 375 + 0 375 43666 37 0 1 146 1 2 108 0 2 53 1 0 26 chain 30281 chr1 248956422 + 240881149 240881507 L1PA6 6164 + 5805 6162 41782 192 1 0 165 chain 7081 chr1 248956422 + 240884504 240885055 L1PREC2 3366 + 2816 3238 77324 34 7 3 11 55 42 14 4 2 30 3 0 11 21 8 23 291 202 19 10 5 18 chain 42076 chr1 248956422 + 240936793 240937368 LTR10B1 532 + 0 532 33309 170 1 0 4 8 0 16 32 0 41 4 2 299 chain 42720 chr1 248956422 + 240956988 240957544 MLT2A2 560 + 0 560 32936 126 0 1 38 14 15 23 0 1 312 4 5 39 chain 43655 chr1 248956422 + 240972242 240972709 L1PA2 6032 + 5565 6032 32348 467 chain 7882 chr1 248956422 + 241001604 241001912 L1MC1 2226 + 1888 2184 75175 27 16 15 44 33 28 44 1 0 4 81 81 6 4 0 12 17 16 19 chain 26147 chr1 248956422 + 241009886 241010191 L1PA6 6164 + 5857 6162 47501 305 chain 26657 chr1 248956422 + 241127413 241127702 L1PA4 6152 + 5862 6151 46748 289 chain 25720 chr1 248956422 + 241134778 241135144 MER48 407 + 0 342 48143 86 8 4 35 26 6 211 chain 21212 chr1 248956422 + 241163356 241163724 LTR49 580 + 41 427 54869 31 7 8 52 1 0 30 21 13 22 8 9 84 4 5 38 21 45 49 chain 26121 chr1 248956422 + 241219149 241219500 THE1B 368 + 6 368 47533 34 5 20 114 1 0 18 2 0 101 1 0 75 chain 3562 chr1 248956422 + 241221979 241222018 MLT2D 439 + 400 439 94733 39 chain 67410 chr1 248956422 + 241244349 241245112 L1PA4 6152 + 5382 6152 24595 67 0 2 447 1 0 236 0 6 12 chain 17712 chr1 248956422 + 241260879 241261080 L1PA3long 6157 + 5954 6157 58995 196 0 2 5 chain 3297 chr1 248956422 + 241271939 241271976 MLT2B1 522 + 483 520 97045 37 chain 61525 chr1 248956422 + 241293685 241294437 L1PA8 5853 + 5088 5853 25978 271 0 1 204 1 0 46 2 0 72 1 0 22 1 18 38 1 0 93 chain 34313 chr1 248956422 + 241379587 241380081 MER41A 554 + 0 442 38486 137 1 0 137 29 0 76 22 0 92 chain 54125 chr1 248956422 + 241415684 241416259 SVA_F 1814 + 1240 1814 28182 564 1 0 10 chain 23662 chr1 248956422 + 241419648 241420005 THE1B 368 + 1 368 51335 62 1 2 104 1 0 29 1 0 4 36 47 119 chain 329992 chr1 248956422 + 241434291 241438221 HERVH-int 3825 + 0 3825 6216 535 5 0 35 2 1 9 1 0 23 0 51 44 43 1 15 126 0 65 1 0 1042 3 18 304 0 4 154 0 1 178 0 1 68 1 0 1276 chain 2224 chr1 248956422 + 241435055 241435083 HERVH-int 3825 + 604 631 105198 15 1 0 12 chain 27751 chr1 248956422 + 241439481 241439882 LTR7 482 + 0 482 45246 69 8 46 109 5 37 24 1 0 29 0 10 95 13 15 48 chain 15100 chr1 248956422 + 241507162 241507350 Tigger3a 397 + 139 327 62155 188 chain 3781 chr1 248956422 + 241599500 241599545 MADE1 96 + 51 96 92983 45 chain 17526 chr1 248956422 + 241632007 241632308 THE1B 368 + 0 310 59208 105 10 12 58 0 3 7 54 58 67 chain 4895 chr1 248956422 + 241669874 241669945 MER5A1 166 + 52 124 86183 26 1 2 44 chain 41643 chr1 248956422 + 241742265 241742806 MER41A 554 + 0 547 33598 39 3 4 50 0 1 302 11 15 19 1 2 93 1 0 22 chain 18177 chr1 248956422 + 241859329 241859683 Tigger4b 360 + 0 345 58486 20 0 7 40 9 15 33 6 39 5 3 0 5 0 3 57 52 0 48 2 0 25 1 0 48 chain 9835 chr1 248956422 + 241906769 241906883 MER57A1 433 + 0 114 70752 114 chain 23680 chr1 248956422 + 241936079 241936370 AluSg7 307 + 5 297 51307 120 0 1 171 chain 7267 chr1 248956422 + 241944908 241944999 LTR47A 437 + 0 91 76776 91 chain 25735 chr1 248956422 + 241949954 241950250 AluY 311 + 6 300 48113 126 0 1 157 3 0 10 chain 7265 chr1 248956422 + 241970522 241970646 MER90a 614 + 178 302 76782 47 9 8 27 5 6 36 chain 47544 chr1 248956422 + 242121551 242122088 L1PA5 6144 + 5594 6132 30462 442 0 1 95 chain 124035 chr1 248956422 + 242126113 242127764 L1PB1 5432 + 3751 5390 14840 23 0 12 22 0 4 170 4 6 4 0 1 10 1 0 260 0 1 345 0 4 15 0 1 333 0 1 39 0 1 100 1 2 7 2 0 3 3 0 23 1 0 8 1 0 12 5 1 9 2 0 5 4 3 44 2 1 16 1 0 42 5 4 13 11 0 9 6 1 21 2 0 5 1 0 14 2 0 24 1 0 20 chain 363213 chr1 248956422 + 242169148 242174876 L1PA5 6144 + 5 5961 5763 123 1 15 97 43 44 44 248 59 76 19 0 51 49 40 27 315 236 31 11 10 24 10 0 8 18 32 23 19 18 65 48 51 52 104 95 78 151 166 79 5 7 25 0 1 255 0 4 159 21 15 289 3 0 10 1 0 249 0 4 14 28 38 100 15 16 38 0 4 399 1 0 97 6 7 190 0 1 25 9 6 90 0 477 272 0 4 283 0 5 124 2 0 1204 chain 201545 chr1 248956422 + 242175050 242177570 L1PA7 6471 + 3907 6467 9657 303 0 2 130 1 2 372 29 43 683 0 1 66 0 2 111 0 7 80 4 5 326 0 14 18 5 1 234 1 4 5 3 0 134 4 6 11 chain 33934 chr1 248956422 + 242194305 242195023 L1PB1 5432 + 4851 5427 38759 214 3 1 28 131 23 21 2 1 8 1 0 11 7 3 7 2 0 52 6 5 11 1 0 41 8 9 25 13 0 16 2 0 5 1 0 14 2 0 24 2 1 20 1 0 13 1 0 18 2 0 5 chain 33967 chr1 248956422 + 242210317 242210859 LTR7 482 + 0 473 38729 136 102 0 88 5 37 158 13 14 40 chain 5840 chr1 248956422 + 242210483 242210548 LTR7 482 + 115 180 81732 65 chain 9723 chr1 248956422 + 242248494 242248635 LTR56 451 + 212 356 70997 71 10 13 60 chain 9898 chr1 248956422 + 242302097 242302236 Tigger3a 397 + 161 290 70619 10 10 0 119 chain 12248 chr1 248956422 + 242309163 242309357 MER107 203 + 0 194 66377 48 6 1 77 10 18 35 3 0 15 chain 143491 chr1 248956422 + 242372322 242373978 L1PA5 6144 + 4512 6144 12811 785 0 1 27 9 1 20 0 1 677 20 2 118 chain 3545 chr1 248956422 + 242385265 242385307 LTR14B 630 + 0 42 94905 42 chain 4829 chr1 248956422 + 242405310 242405425 MER20 218 + 36 153 86545 20 47 49 48 chain 6174 chr1 248956422 + 242410687 242410756 MER85 139 + 13 82 80439 69 chain 41271 chr1 248956422 + 242459109 242459570 HERVK11D-int 613 + 153 613 33808 135 1 0 325 chain 77710 chr1 248956422 + 242459571 242460442 MER11D 897 + 1 897 22160 590 0 24 153 0 1 128 chain 9558 chr1 248956422 + 242466432 242466576 L1MA7 2200 + 1770 1912 71354 60 1 0 9 1 0 8 0 3 5 3 0 57 chain 470089 chr1 248956422 + 242481073 242486419 L1PA4 6152 + 0 5349 3854 1039 0 1 2170 0 1 928 5 6 79 9 4 1044 0 1 31 0 4 41 chain 41442 chr1 248956422 + 242563359 242563894 MLT2A2 560 + 1 560 33710 85 0 3 76 7 8 187 0 1 45 0 19 135 chain 520690 chr1 248956422 + 242586642 242593082 L1PA7 6471 + 0 6461 2239 403 7 0 205 1 0 280 4 8 6 4 0 11 0 1 394 0 3 481 0 1 827 0 2 8 0 2 4 1 0 122 0 4 96 0 1 30 42 58 544 1 0 6 5 0 47 0 4 28 4 8 1081 0 4 5 0 2 180 4 8 329 4 0 406 0 4 18 9 10 69 0 2 10 0 3 233 3 1 358 15 1 8 2 0 145 chain 21023 chr1 248956422 + 242595926 242596245 MER61-int 3695 + 733 1101 55090 4 0 1 25 2 0 56 0 49 73 4 3 8 1 3 89 4 6 5 2 0 46 chain 7914 chr1 248956422 + 242596441 242596546 MER57-int 2662 + 938 1041 75085 5 1 0 55 1 0 43 chain 72579 chr1 248956422 + 242596552 242597561 MER11A 1151 + 6 1151 23411 79 0 91 54 1 0 64 4 0 33 0 2 53 2 1 5 0 1 41 13 14 94 0 1 145 0 1 46 0 1 11 0 4 61 0 1 12 8 41 37 2 1 20 0 1 14 1 2 44 6 7 123 6 10 30 chain 172283 chr1 248956422 + 242614976 242616966 L1P1 4361 + 2353 4341 10985 806 1 0 138 0 1 205 0 1 646 1 0 155 1 0 23 2 1 12 chain 45782 chr1 248956422 + 242618742 242619323 L1PA8 5853 + 5269 5853 31175 293 1 0 48 2 0 14 10 19 45 1 0 52 2 1 19 1 0 93 chain 8642 chr1 248956422 + 242653977 242654072 L1PA7 6471 + 5489 5584 73368 95 chain 73576 chr1 248956422 + 242654092 242654941 L1PA7 6471 + 5621 6470 23198 849 chain 5195 chr1 248956422 + 242662178 242662240 MSTD 398 + 286 348 84699 62 chain 46547 chr1 248956422 + 242671904 242672461 L1PA7 6471 + 5910 6468 30825 398 7 8 152 chain 3208 chr1 248956422 + 242690141 242690180 LTR12C 1709 + 671 710 97814 39 chain 59826 chr1 248956422 + 242704769 242705532 L1PA10 4194 + 3364 4150 26425 299 1 4 22 0 8 228 2 1 43 8 24 123 3 0 34 chain 68906 chr1 248956422 + 242713952 242714720 L1PA4 6152 + 5387 6152 24233 461 8 5 299 chain 56374 chr1 248956422 + 242866938 242867606 L1PA7 6471 + 4856 5536 27463 196 0 5 281 0 8 97 1 0 93 chain 77083 chr1 248956422 + 242867606 242868534 L1PA7 6471 + 5537 6467 22294 84 1 0 77 0 2 49 1 0 382 0 1 248 0 3 76 2 0 8 chain 39583 chr1 248956422 + 242891653 242892089 L1PA2 6032 + 5597 6032 34969 165 2 1 269 chain 3227 chr1 248956422 + 242901941 242901982 MER39 703 + 599 641 97692 6 0 1 35 chain 6807 chr1 248956422 + 242902099 242902199 L1MA7 2200 + 1758 1857 78291 77 6 5 17 chain 29518 chr1 248956422 + 242923268 242923955 MER39B 650 + 3 495 42586 11 7 10 59 0 1 4 1 0 5 27 26 109 15 13 22 1 0 63 3 2 19 1 7 13 199 0 128 chain 228070 chr1 248956422 + 242947527 242951291 L1PA13 3608 + 116 3468 8804 19 32 28 14 3 0 24 28 17 68 10 8 122 1 0 12 1 0 20 0 2 7 23 13 11 1 0 16 6 4 15 2 0 17 5 4 94 1 2 95 0 5 35 13 14 109 0 1 487 5 0 46 17 15 448 72 70 35 1 0 131 5 6 22 4 0 86 3 4 56 355 0 30 2 1 152 7 8 180 12 14 6 2 0 160 5 4 52 23 24 152 2 1 78 1 0 14 15 11 88 2 0 23 1 2 36 1 0 55 3 0 6 6 4 44 2 0 5 2 0 20 chain 38985 chr1 248956422 + 242993162 242993819 LTR9B 643 + 0 643 35366 133 0 2 65 4 9 5 0 2 172 11 12 29 67 41 32 12 1 14 3 17 57 13 12 40 chain 57177 chr1 248956422 + 242995103 242996171 MER4E1 777 + 0 772 27205 17 7 0 24 1 0 155 7 5 4 1 0 127 309 0 158 3 25 28 6 4 9 0 4 212 chain 87430 chr1 248956422 + 243077252 243078304 MER11B 1079 + 0 1064 20149 316 1 18 49 0 1 388 8 2 290 chain 25511 chr1 248956422 + 243106022 243106376 THE1B 368 + 0 368 48469 44 7 22 106 10 9 66 0 1 46 1 0 74 chain 3125 chr1 248956422 + 243111387 243111442 Arthur1B 1073 + 813 867 98583 13 1 2 27 2 0 12 chain 6977 chr1 248956422 + 243146047 243146150 L1PB1 5432 + 5178 5279 77678 41 4 3 14 1 0 43 chain 61873 chr1 248956422 + 243151339 243152222 Tigger1 2417 + 537 1445 25895 16 8 12 92 0 1 73 0 2 79 0 7 127 15 16 66 8 11 83 1 0 102 9 13 62 1 0 100 0 5 41 chain 3448 chr1 248956422 + 243185010 243185050 MADE1 96 + 2 42 95669 40 chain 85324 chr1 248956422 + 243214934 243216008 MER11B 1079 + 0 1079 20564 175 2 1 49 0 5 86 1 18 407 10 0 25 5 7 169 0 2 89 0 1 21 11 0 24 chain 6826 chr1 248956422 + 243349395 243349477 MER58A 224 + 130 212 78219 82 chain 23330 chr1 248956422 + 243478692 243478981 AluSc 308 + 16 304 51879 109 2 1 178 chain 38486 chr1 248956422 + 243530302 243530829 L1PREC2 3366 + 849 1385 35725 259 0 1 134 15 16 47 0 3 18 8 12 46 chain 20380 chr1 248956422 + 243545968 243546266 THE1B 368 + 2 306 55912 167 1 0 21 18 27 14 1 0 11 2 1 63 chain 66820 chr1 248956422 + 243576078 243576943 L1PA10 4194 + 3278 4150 24741 431 0 3 80 0 8 282 1 0 32 8 5 31 chain 17142 chr1 248956422 + 243607741 243608048 THE1C 375 + 14 335 59649 49 0 2 13 76 84 19 0 1 21 0 3 129 chain 103897 chr1 248956422 + 243651880 243653517 L1P2 5180 + 1694 3665 17829 154 295 0 112 6 31 124 0 4 200 14 0 224 0 614 13 2 1 12 4 0 81 0 5 396 chain 6307 chr1 248956422 + 243659052 243659152 L1MB1 2102 + 1879 1977 79972 55 12 10 33 chain 197037 chr1 248956422 + 243659867 243662715 L1PA3long 6157 + 3308 6156 9808 451 7 0 595 0 4 478 0 3 1317 chain 49884 chr1 248956422 + 243685672 243686245 L1PA7 6471 + 4375 4949 29609 199 1 2 373 chain 125951 chr1 248956422 + 243771769 243773191 L1PA5 6144 + 4713 6138 14567 584 0 4 12 4 3 656 1 0 4 0 1 161 chain 535417 chr1 248956422 + 243807054 243813183 L1PA5 6144 + 0 6139 1599 951 0 1 74 0 2 722 1 0 563 1 0 618 0 1 112 0 8 63 2 1 566 1 0 161 0 1 23 0 1 12 0 2 467 0 4 88 1 0 1070 0 3 296 1 2 106 9 0 221 chain 284591 chr1 248956422 + 243820248 243823987 L1PA10 4194 + 387 4161 7296 8 10 0 8 1 0 85 16 13 58 19 23 154 0 1 114 0 18 276 26 25 32 0 1 81 0 4 53 14 10 40 0 3 6 3 0 32 0 1 437 0 3 349 0 4 404 8 6 36 0 12 8 13 1 221 0 1 231 0 1 181 0 1 110 4 8 157 6 10 35 0 1 256 0 13 197 4 1 11 1 0 22 1 0 11 chain 15416 chr1 248956422 + 243840299 243840512 L1PA8 5853 + 5637 5853 61765 42 1 0 43 0 6 12 2 1 15 6 5 92 chain 20939 chr1 248956422 + 243911587 243911873 L1PA8 5853 + 5573 5853 55210 35 2 0 70 2 1 6 8 0 9 0 7 39 2 1 19 1 0 93 chain 3863 chr1 248956422 + 244000351 244000394 L1MC3 1789 + 1334 1377 92388 43 chain 25015 chr1 248956422 + 244221245 244221521 L1PA5 6144 + 5856 6132 49250 276 chain 22640 chr1 248956422 + 244243116 244243406 AluSp 311 + 0 284 52925 19 5 1 201 3 1 62 chain 23070 chr1 248956422 + 244309209 244309574 THE1B 368 + 0 368 52258 113 0 1 55 1 0 6 7 6 17 0 3 8 1 5 14 22 20 58 17 16 46 chain 6593 chr1 248956422 + 244330984 244331057 MER21B 843 + 631 704 78998 73 chain 51779 chr1 248956422 + 244334570 244335174 L1PA6 6164 + 5344 5953 28944 38 0 1 181 0 2 309 0 2 76 chain 27995 chr1 248956422 + 244350716 244351129 LTR7 482 + 39 477 44872 62 20 14 120 1 32 107 1 0 41 19 20 42 chain 6806 chr1 248956422 + 244359312 244359388 L1MA3 4352 + 3283 3359 78298 76 chain 325516 chr1 248956422 + 244491012 244494604 L1PA4 6152 + 2554 6143 6294 293 0 1 291 0 1 1598 4 0 661 1 0 744 chain 324726 chr1 248956422 + 244521906 244525498 L1PA3long 6157 + 2560 6156 6318 15 0 4 389 0 1 726 1 0 2461 chain 196327 chr1 248956422 + 244540006 244542156 L1PA3long 6157 + 3993 6146 9836 364 0 4 229 2 1 1555 chain 8648 chr1 248956422 + 244576455 244576607 LTR10E 629 + 480 629 73355 77 37 35 31 1 0 6 chain 13851 chr1 248956422 + 244596590 244596774 L1PA8 5853 + 5672 5853 63795 10 1 0 58 2 1 19 1 0 93 chain 3553 chr1 248956422 + 244672003 244672042 MSTB 430 + 8 47 94822 39 chain 4913 chr1 248956422 + 244692781 244692922 MER5A1 166 + 0 142 86099 45 67 68 29 chain 5709 chr1 248956422 + 244700969 244701041 MLT1-int 490 + 196 274 82299 49 0 6 23 chain 26871 chr1 248956422 + 244716082 244716425 L1PA8 5853 + 5506 5853 46440 58 1 0 46 2 0 68 11 17 45 2 1 18 0 2 92 chain 3003 chr1 248956422 + 244734895 244734932 LTR23 429 + 238 276 99807 13 0 1 24 chain 8194 chr1 248956422 + 244743605 244743746 LTR49-int 1717 + 119 254 74427 22 27 22 16 1 0 75 chain 43145 chr1 248956422 + 244774329 244774838 MER9a3 513 + 0 513 32687 18 0 2 91 0 1 323 0 1 77 chain 38265 chr1 248956422 + 244815084 244815948 MER41A 554 + 0 554 35866 86 6 7 33 324 8 44 0 1 265 5 4 21 7 12 73 chain 102515 chr1 248956422 + 244818601 244821178 MER41-int 2638 + 770 2636 18007 39 0 14 210 1103 366 90 0 3 37 17 20 69 2 1 51 1 0 105 0 1 24 0 5 6 5 0 65 3 1 33 7 5 250 13 11 58 1 2 141 0 1 41 0 10 86 34 35 86 chain 8281 chr1 248956422 + 244818855 244819282 MER41-int 2638 + 1854 1964 74214 21 2 0 35 315 0 54 chain 41730 chr1 248956422 + 244821187 244821738 MER41A 554 + 0 554 33532 26 5 5 55 16 17 294 0 1 32 0 1 123 chain 22901 chr1 248956422 + 244938186 244938470 AluSc 308 + 10 295 52510 193 1 2 90 chain 5985 chr1 248956422 + 244957286 244957365 MADE1 96 + 0 96 81143 49 0 17 30 chain 6899 chr1 248956422 + 244977568 244977668 LTR9B 643 + 460 561 77959 52 3 0 5 1 0 4 0 5 35 chain 6358 chr1 248956422 + 245030372 245030451 MER2B 336 + 172 251 79815 79 chain 3772 chr1 248956422 + 245057276 245057324 MADE1 96 + 1 69 93051 33 0 20 15 chain 43665 chr1 248956422 + 245136569 245137100 MER41A 554 + 0 534 32340 395 5 8 131 chain 4670 chr1 248956422 + 245280550 245280605 LTR9B 643 + 22 77 87440 55 chain 29820 chr1 248956422 + 245282018 245282339 L1PA2 6032 + 4291 4612 42217 321 chain 34963 chr1 248956422 + 245321957 245322387 L1PA8 5853 + 5430 5853 38046 134 1 0 36 1 0 8 2 0 74 1 0 58 2 1 19 1 0 93 chain 63225 chr1 248956422 + 245529753 245530571 L1MA3 4352 + 3157 3968 25577 221 5 3 107 4 0 41 1 0 439 chain 28794 chr1 248956422 + 245586601 245586909 AluYb8 318 + 0 305 43646 123 3 0 182 chain 245810 chr1 248956422 + 245627329 245630747 L1PA8 5853 + 2518 5852 8333 102 0 18 60 0 1 132 0 4 108 3 2 22 0 1 426 253 106 15 0 13 10 0 2 102 0 1 10 0 8 78 0 4 271 0 2 111 0 2 144 0 1 36 8 9 97 1 0 213 0 3 189 1 0 163 0 4 16 4 10 70 0 2 478 1 0 46 7 5 64 1 0 14 9 8 39 2 1 19 41 40 52 chain 12108 chr1 248956422 + 245651640 245651901 MER1B 344 + 63 332 66650 18 56 60 13 8 9 99 16 19 51 chain 3215 chr1 248956422 + 245669849 245669885 L1PB3 3668 + 3530 3566 97757 36 chain 6566 chr1 248956422 + 245714773 245714848 L1P3 4156 + 18 93 79094 75 chain 12764 chr1 248956422 + 245723330 245723512 L1MA3 4352 + 22 198 65495 136 1 0 17 1 0 5 4 0 18 chain 228773 chr1 248956422 + 245726401 245729799 L1PA11 4918 + 1421 4504 8781 75 19 0 257 1 2 60 4 1 236 0 3 142 19 11 16 5 7 16 0 3 5 0 4 447 372 8 281 0 1 118 0 1 18 1 0 531 0 2 145 0 1 88 0 107 279 42 8 38 5 0 61 2 1 13 2 0 60 10 8 14 2 1 14 chain 172943 chr1 248956422 + 245745762 245747847 L1PA7 6471 + 4356 6461 10955 216 1 0 87 0 11 133 8 10 136 1 0 59 0 1 4 5 4 582 0 4 11 0 3 695 2 1 67 0 3 78 chain 74265 chr1 248956422 + 245774728 245775730 SVA_E 1901 + 0 1900 23012 146 1 0 88 1 0 90 3 0 62 0 3 27 36 730 26 0 204 9 21 21 27 7 8 58 0 3 18 4 6 359 4 0 15 chain 541576 chr1 248956422 + 245816539 245822552 L1PA3long 6157 + 2 6152 1229 68 0 1 81 0 1 102 0 1 108 0 1 402 11 139 944 0 3 466 1 0 30 0 2 1841 1 2 447 1 0 240 1 2 1269 chain 54750 chr1 248956422 + 245884647 245885336 LTR12_ 688 + 0 688 27957 17 6 5 60 25 0 28 5 30 548 chain 42007 chr1 248956422 + 245887008 245887555 MER41A 554 + 0 554 33356 406 9 8 5 0 3 5 0 1 39 1 6 72 1 0 9 chain 67108 chr1 248956422 + 245905877 245906853 L1MA2 4263 + 3140 4111 24681 14 0 7 103 0 1 79 5 5 49 0 1 4 1 0 170 3 0 11 15 11 68 12 15 63 2 4 61 3 0 152 1 0 6 2 1 93 18 13 34 1 0 6 chain 55513 chr1 248956422 + 245912903 245913524 L1PA5 6144 + 5525 6144 27712 607 3 1 11 chain 4162 chr1 248956422 + 245914132 245914182 MADE1 96 + 46 96 90371 50 chain 216509 chr1 248956422 + 245941822 245944719 L1PA10 4194 + 1276 4161 9131 484 1 0 219 0 3 91 0 1 12 23 22 6 0 3 53 17 3 52 1 5 279 2 0 87 87 79 21 0 8 193 0 2 42 0 4 346 4 0 149 1 0 28 2 0 278 5 0 45 0 3 137 0 2 183 3 0 34 1 0 11 chain 6781 chr1 248956422 + 245947910 245948160 MER31A 484 + 0 240 78378 28 79 50 18 2 0 9 41 61 18 6 7 49 chain 123658 chr1 248956422 + 245969931 245971456 L1PA7 6471 + 4928 6470 14907 31 0 1 279 0 1 261 3 5 96 0 4 16 0 2 69 4 6 4 0 1 24 0 3 577 7 9 107 1 0 46 chain 6319 chr1 248956422 + 246028033 246028108 L1MA5 2750 + 97 172 79936 75 chain 151411 chr1 248956422 + 246044890 246046617 L1PA5 6144 + 4391 6126 12259 686 0 1 193 1 5 18 1 4 828 chain 82387 chr1 248956422 + 246082684 246083636 LTR5_Hs 974 + 0 974 21155 285 0 1 546 0 22 57 1 0 63 chain 57034 chr1 248956422 + 246242506 246243182 L1PA5 6144 + 2038 2709 27257 202 7 5 68 2 1 132 2 0 263 chain 41114 chr1 248956422 + 246268049 246268902 MER41A 554 + 0 528 33904 172 0 3 196 332 4 153 chain 57793 chr1 248956422 + 246285435 246286178 L1PB1 5432 + 4259 5010 27022 16 0 2 85 15 13 253 0 1 58 0 2 115 4 3 119 0 1 11 0 5 67 chain 22883 chr1 248956422 + 246332834 246334902 Tigger1 2417 + 867 1871 52532 56 25 28 88 0 3 22 17 26 76 1678 599 106 chain 16965 chr1 248956422 + 246347812 246348132 L1PA16 3655 + 3124 3434 59841 50 0 1 11 15 20 80 25 23 64 35 21 40 chain 38171 chr1 248956422 + 246357108 246357597 MER41A 554 + 13 499 35931 213 8 1 178 0 4 90 chain 312372 chr1 248956422 + 246357625 246361934 L1PB1 5432 + 1113 5422 6568 108 1 2 15 3 8 133 17 22 9 1 0 261 0 3 828 4 0 28 0 2 102 0 3 165 46 43 156 14 14 27 0 1 117 9 12 315 1 0 5 13 16 16 8 4 54 0 1 149 7 0 34 0 1 30 0 16 149 6 5 154 0 7 500 5 6 178 1 0 91 0 2 8 0 1 54 1 0 44 6 8 83 1 2 9 5 0 24 1 0 4 3 2 13 17 11 52 2 1 16 1 0 44 1 0 15 13 1 8 0 1 20 3 1 5 1 0 14 13 11 13 1 0 22 1 0 12 1 0 18 chain 135889 chr1 248956422 + 246362424 246363925 SVA_D 2077 + 0 2066 13445 13 4 0 21 0 2 261 1 0 287 0 40 63 0 40 190 1 0 3 0 490 356 1 0 300 chain 29991 chr1 248956422 + 246378261 246378654 MLT2A1 477 + 0 399 42062 44 0 9 116 4 1 8 0 1 24 0 1 39 5 7 135 4 0 14 chain 54730 chr1 248956422 + 246411371 246411977 L1PA4 6152 + 5537 6143 27961 606 chain 33711 chr1 248956422 + 246418825 246419348 LTR7B 505 + 0 495 38917 204 34 0 12 5 0 11 1 56 40 7 8 31 45 0 133 chain 4381 chr1 248956422 + 246425739 246425790 LTR16C 481 + 392 443 88998 51 chain 29546 chr1 248956422 + 246432955 246433385 L1PA16 3655 + 1726 2165 42552 65 0 2 132 0 3 34 45 49 154 chain 6230 chr1 248956422 + 246464974 246465051 HY3 101 + 19 96 80238 77 chain 3570 chr1 248956422 + 246525235 246525293 MER2 342 + 93 152 94656 22 9 10 27 chain 66522 chr1 248956422 + 246525652 246526397 L1PA4 6152 + 5404 6152 24811 408 0 1 79 0 1 145 0 1 113 chain 21315 chr1 248956422 + 246686566 246686891 LTR7B 505 + 0 476 54747 105 0 10 53 8 110 11 2 1 21 0 41 55 0 1 5 1 0 28 14 13 22 chain 75099 chr1 248956422 + 246693879 246694921 MER11A 1151 + 0 1151 22819 55 0 99 74 1 0 64 8 4 31 0 2 11 1 0 127 0 23 46 1 2 94 8 6 46 5 6 145 23 7 78 0 1 46 1 0 16 0 1 23 0 6 138 chain 61542 chr1 248956422 + 246710587 246711444 LTR12 884 + 0 884 25972 90 0 132 152 5 3 273 103 0 234 chain 62698 chr1 248956422 + 246712259 246713113 LTR12 884 + 0 882 25712 138 36 24 19 0 25 151 0 2 19 2 0 92 10 26 112 1 0 274 chain 423800 chr1 248956422 + 246714347 246719373 L1PA4 6152 + 381 5176 4828 57 0 1 83 234 1 1300 1 0 1314 0 1 784 0 1 1253 chain 79317 chr1 248956422 + 246719911 246720971 MER11C 1089 + 0 1073 21775 246 0 9 62 0 4 65 1 0 146 49 46 12 11 10 90 1 5 4 1 0 38 0 1 127 0 1 50 1 0 148 0 1 8 chain 29564 chr1 248956422 + 246813213 246813596 LTR7 482 + 4 470 42528 97 0 50 73 5 37 46 0 1 162 chain 26239 chr1 248956422 + 246864591 246864876 AluYb8 318 + 38 318 47363 88 5 0 192 chain 8835 chr1 248956422 + 246869149 246869481 Tigger1 2417 + 49 637 72908 4 0 1 6 2 0 64 156 349 16 10 71 25 8 11 41 chain 4286 chr1 248956422 + 246996638 246996731 L1MA3 4352 + 4266 4352 89594 16 2 1 5 1 0 29 1 0 11 1 0 5 5 2 17 chain 90742 chr1 248956422 + 247018054 247019145 L1P3 4156 + 3054 4139 19545 429 1 0 17 1 0 42 14 12 35 0 1 517 2 0 6 3 2 24 chain 41587 chr1 248956422 + 247024660 247025149 MER9a1 513 + 0 513 33633 24 0 23 369 0 1 96 chain 317177 chr1 248956422 + 247025947 247029662 HERVK9-int 4720 + 54 4720 6466 4 1 0 21 0 1 44 1 0 9 1 0 29 1 0 842 0 24 120 0 5 40 1 2 5 1 0 296 0 924 44 2 1 4 0 1 236 1 0 933 1 0 291 0 2 203 0 1 584 chain 44285 chr1 248956422 + 247029662 247030174 MER9a1 513 + 0 513 31963 416 0 1 96 chain 122294 chr1 248956422 + 247031546 247032967 SVA_D 2077 + 16 1740 15144 896 0 86 5 0 51 38 0 1 8 0 79 27 21 101 35 0 1 7 0 1 36 0 1 4 6 7 44 0 1 4 0 1 290 chain 11786 chr1 248956422 + 247067489 247068036 L1MA1 4479 + 3970 4184 67239 63 320 3 42 4 2 25 11 9 28 1 0 9 1 0 5 3 0 16 7 0 12 chain 22322 chr1 248956422 + 247093191 247093496 HSMAR1 1287 + 11 340 53378 105 8 9 8 0 1 16 0 18 95 0 3 19 0 1 54 chain 41963 chr1 248956422 + 247110623 247111180 LTR14C 587 + 0 587 33376 118 1 26 13 6 7 340 6 10 73 chain 37821 chr1 248956422 + 247127448 247127909 LTR2 463 + 0 463 36191 129 17 15 6 0 5 207 1 0 101 chain 453828 chr1 248956422 + 247131118 247138553 L1PA8A 6298 + 39 6267 4288 19 32 21 18 3 0 20 30 0 8 49 67 12 7 4 13 1 0 8 1 0 7 1 0 5 3 2 14 5 1 7 1 0 43 1 0 20 8 2 32 0 1 30 1 2 11 3 1 18 13 10 134 14 23 434 1 2 113 10 8 32 7 8 247 461 0 166 39 1 382 0 2 31 319 0 97 0 4 636 0 4 63 0 1 144 1 5 255 0 47 51 16 21 20 1 0 47 0 4 24 1 8 42 1 0 57 0 1 50 5 12 267 0 1 144 0 2 273 0 17 34 0 3 31 0 10 136 0 3 168 0 1 127 0 1 6 1 0 4 308 0 323 0 7 61 166 0 43 0 3 218 5 6 120 0 3 347 44 28 71 0 4 77 0 1 116 chain 34605 chr1 248956422 + 247132556 247133013 LTR2 463 + 0 463 38286 58 0 4 274 0 1 22 37 39 9 1 0 56 chain 8730 chr1 248956422 + 247165290 247165402 L1PA14 3548 + 3139 3250 73142 82 1 0 29 chain 40619 chr1 248956422 + 247167631 247168246 L1PB2 3958 + 3133 3746 34206 64 0 1 111 2 0 49 0 3 17 1 4 5 1 0 26 0 4 22 2 0 5 9 7 18 0 4 66 2 0 5 1 3 15 14 6 42 8 7 64 2 1 64 chain 22161 chr1 248956422 + 247198390 247198679 THE1A 353 + 0 325 53624 110 1 0 104 0 39 22 5 3 47 chain 37563 chr1 248956422 + 247218170 247218627 LTR71A 459 + 0 459 36361 32 0 2 425 chain 116221 chr1 248956422 + 247219953 247221257 SVA_D 2077 + 7 2073 16184 18 4 0 11 4 0 261 1 0 234 0 196 111 0 575 660 chain 118314 chr1 248956422 + 247223151 247224819 L1PA10 4194 + 819 2528 15831 18 0 3 46 12 15 35 29 30 274 0 9 139 3 6 103 8 0 7 13 21 158 3 4 130 7 13 27 0 7 11 0 3 227 5 6 28 8 6 124 0 6 253 chain 90131 chr1 248956422 + 247229466 247233180 L1PB1 5432 + 3998 5422 19659 352 2316 31 126 0 4 88 0 9 15 10 7 33 0 7 377 1 0 4 0 14 5 1 0 33 13 11 12 1 0 10 1 0 10 1 0 10 18 12 52 2 1 15 1 0 45 1 0 11 72 55 23 1 0 21 1 0 13 1 0 18 chain 5836 chr1 248956422 + 247234383 247234755 L1MA4A 3247 + 3019 3116 81756 17 274 0 59 0 1 5 1 0 5 1 0 10 chain 187433 chr1 248956422 + 247239325 247241392 L1PA5 6144 + 4066 6139 10239 1192 0 1 35 0 5 840 chain 48565 chr1 248956422 + 247265920 247266500 LTR14C 587 + 0 581 30099 12 0 2 284 1 0 283 chain 171578 chr1 248956422 + 247286896 247289580 HERVH48-int 3304 + 118 2706 11017 8 2 0 8 8 4 5 2 0 12 3 0 8 3 0 9 2 0 10 13 10 7 2 0 57 13 0 21 1 0 9 11 6 4 1 0 64 8 4 5 1 0 24 8 0 48 1 0 7 2 4 11 15 10 79 1 0 6 14 12 43 31 33 17 1 0 4 3 1 19 13 11 35 2 0 42 1 0 101 11 17 114 5 4 5 0 1 5 1 0 20 1 0 14 2 0 32 3 0 3 2 0 22 2 0 4 1 0 17 1 0 18 2 0 27 7 6 10 24 15 122 1 0 12 1 0 8 1 0 74 0 1 142 2 1 89 1 0 141 1 0 13 1 6 118 0 1 108 1 2 43 0 4 89 17 16 15 2 0 66 1 0 12 9 8 40 1 0 229 12 10 12 1 0 44 4 2 13 2 1 30 2 0 17 2 0 7 chain 11261 chr1 248956422 + 247326664 247326829 MLT1B 390 + 27 189 68148 26 4 3 18 2 0 115 chain 15507 chr1 248956422 + 247353517 247353705 LTR71A 459 + 0 188 61640 188 chain 36591 chr1 248956422 + 247360115 247360572 LTR71A 459 + 1 459 37020 200 0 1 257 chain 27446 chr1 248956422 + 247365004 247365359 THE1A 353 + 0 353 45646 103 1 0 6 2 1 125 1 0 5 0 1 112 chain 125485 chr1 248956422 + 247365359 247367181 THE1A-int 1579 + 0 1579 14632 91 0 10 14 0 1 136 265 8 278 2 0 108 0 1 83 7 22 31 10 0 479 1 0 317 chain 25429 chr1 248956422 + 247367181 247367508 THE1A 353 + 0 325 48584 109 2 1 155 1 0 60 chain 137419 chr1 248956422 + 247521351 247522933 SVA_C 1631 + 0 1631 13308 12 4 12 11 4 0 142 10 11 663 0 46 106 0 1 295 0 1 314 4 0 17 chain 155895 chr1 248956422 + 247580848 247584171 L1PBa 3878 + 1380 3528 12010 66 7 6 33 0 15 114 8 9 269 226 30 114 0 3 318 995 1 102 1 0 141 0 1 65 4 5 37 3 0 251 0 1 82 3 5 54 0 3 115 3 0 54 20 16 238 chain 40912 chr1 248956422 + 247602302 247602787 L1PA6 6164 + 5666 6161 34023 64 0 10 41 0 1 7 1 0 372 chain 106032 chr1 248956422 + 247608143 247609698 L1MA1 4479 + 1326 2882 17558 70 1 0 40 4 0 239 4 5 368 0 1 39 12 24 63 0 1 28 1 4 114 7 5 21 3 0 5 0 3 75 12 11 159 8 7 16 5 6 18 0 1 18 2 1 23 10 6 71 12 10 19 11 9 60 1 0 16 chain 26502 chr1 248956422 + 247609698 247610067 L1PA8 5853 + 5491 5853 46976 73 1 0 46 2 0 72 1 0 8 13 11 39 2 1 19 1 0 26 0 1 66 chain 567840 chr1 248956422 + 247687173 247693204 L1HS 6032 + 1 6032 20 6031 chain 112541 chr1 248956422 + 247727449 247728670 L1PA2 6032 + 2892 4113 16743 1221 chain 3789 chr1 248956422 + 247743370 247743414 L1P4e 1373 + 855 899 92920 44 chain 36979 chr1 248956422 + 247754057 247754462 L1PA4 6152 + 4866 5270 36749 181 1 0 223 chain 61794 chr1 248956422 + 247768621 247769481 L1PB1 5432 + 4362 5216 25915 251 5 8 82 0 2 398 1 2 12 4 1 9 9 7 13 1 0 10 6 2 9 2 0 48 chain 45399 chr1 248956422 + 247778999 247779522 L1PA5 6144 + 4865 5385 31366 111 1 0 135 0 1 47 3 0 226 chain 165696 chr1 248956422 + 247801025 247802867 L1PA3long 6157 + 4304 6157 11356 229 0 7 770 0 4 843 chain 11732 chr1 248956422 + 247822136 247822672 MLT2B3 573 + 7 525 67348 18 1 0 94 209 177 23 46 56 21 78 85 18 1 0 22 1 0 4 chain 3704 chr1 248956422 + 247913940 247913982 MADE1 96 + 52 94 93589 42 chain 210439 chr1 248956422 + 247971660 247974426 L1PA8 5853 + 2233 5850 9340 655 1 0 46 12 18 257 15 4 577 3 2 375 0 850 547 1 0 11 1 0 32 0 6 66 9 13 8 2 0 40 2 1 15 16 15 32 3 7 40 chain 7421 chr1 248956422 + 247996999 247997093 HY3 101 + 0 99 76339 29 0 4 35 0 1 30 chain 100969 chr1 248956422 + 248008549 248009829 L1P3 4156 + 2816 4116 18189 642 0 11 77 0 4 392 0 7 142 1 0 4 0 1 11 2 0 9 chain 21488 chr1 248956422 + 248020155 248020443 L1PB 1623 + 969 1260 54525 186 1 0 4 0 1 11 0 1 6 1 0 49 0 3 30 chain 99886 chr1 248956422 + 248025011 248026108 L1PA3long 6157 + 5059 6157 18313 966 0 1 131 chain 84809 chr1 248956422 + 248026585 248027655 MER11C 1089 + 0 1074 20658 17 0 1 515 65 66 321 7 8 69 0 1 76 chain 8225 chr1 248956422 + 248029119 248029218 HY3 101 + 0 99 74336 99 chain 124400 chr1 248956422 + 248041122 248042514 L1PA3long 6157 + 4759 6157 14793 764 0 5 535 5 0 8 0 5 76 0 1 4 chain 8262 chr1 248956422 + 248045787 248045886 HY3 101 + 0 99 74261 99 chain 551658 chr1 248956422 + 248067512 248073636 L1PA3long 6157 + 6 6157 628 1005 0 19 127 0 5 3769 3 4 343 0 1 28 0 1 849 chain 45579 chr1 248956422 + 248082009 248082511 L1PA2 6032 + 5536 6032 31274 354 6 0 142 chain 17191 chr1 248956422 + 248162520 248162749 L1PA7 6471 + 6230 6455 59579 133 8 4 88 chain 3162 chr1 248956422 + 248163592 248163658 MER53 195 + 123 169 98262 9 19 0 5 1 0 32 chain 31967 chr1 248956422 + 248210436 248210921 LTR7B 505 + 0 495 40364 108 0 10 57 0 38 12 34 27 28 29 0 85 1 0 76 14 13 41 chain 92736 chr1 248956422 + 248214526 248215668 L1PA7 6471 + 5311 6464 19229 38 0 1 272 0 10 70 2 1 6 0 1 684 9 9 61 chain 65556 chr1 248956422 + 248221102 248221825 L1PA2 6032 + 5324 6032 25063 697 15 0 11 chain 537882 chr1 248956422 + 248252861 248258869 L1PA3long 6157 + 0 6152 1457 153 1 2 128 0 8 485 0 128 630 1 2 4 1 0 1395 0 1 323 0 1 32 0 1 1069 0 4 1786 chain 43075 chr1 248956422 + 248269920 248270417 L1PA5 6144 + 5634 6132 32730 9 0 1 488 chain 78992 chr1 248956422 + 248291131 248292116 L1PA8 5853 + 3882 4884 21875 172 0 4 450 1 2 21 9 15 155 0 5 106 0 1 71 chain 63494 chr1 248956422 + 248298898 248299599 L1PA3long 6157 + 1855 2556 25525 701 chain 41703 chr1 248956422 + 248299599 248300059 L1PA3long 6157 + 2557 3017 33549 460 chain 96027 chr1 248956422 + 248396091 248397251 L1PA7 6471 + 5163 6322 18775 458 1 0 510 2 0 6 0 2 183 chain 5448 chr1 248956422 + 248423536 248423600 MER51C 639 + 0 64 83471 64 chain 12747 chr1 248956422 + 248464818 248465081 L1PB1 5432 + 5179 5422 65531 41 2 1 16 1 0 44 1 0 15 1 0 4 2 0 8 8 0 18 9 6 14 2 0 26 8 9 11 2 1 11 1 0 18 chain 36700 chr1 248956422 + 248519929 248520413 L1PA7 6471 + 5960 6450 36956 30 0 3 17 0 2 295 8 7 12 2 0 88 1 5 31 chain 530592 chr1 248956422 + 248527957 248533933 L1PA3long 6157 + 7 6152 1803 145 0 1 218 6 0 199 0 6 200 0 128 141 0 1 331 0 1 79 1 6 383 0 1 502 0 2 881 0 4 23 0 4 829 0 1 255 6 10 523 0 4 425 0 4 81 0 1 287 0 1 328 0 7 133 chain 5009 chr1 248956422 + 248578894 248578952 L1MA2 4263 + 2379 2437 85613 58 chain 8564 chr1 248956422 + 248586298 248586405 L1MA7 2200 + 1679 1785 73530 40 1 0 66 chain 150700 chr1 248956422 + 248602649 248604681 L1PA8 5853 + 3796 5853 12306 70 0 5 32 1 3 61 0 3 112 0 1 23 0 2 172 0 1 53 1 3 70 0 4 76 1 0 270 1 2 68 0 1 177 4 7 47 0 3 22 0 2 10 0 3 105 17 11 6 0 6 58 1 2 226 0 10 41 1 0 45 2 0 69 2 1 12 1 0 5 1 0 44 2 1 19 1 0 34 11 1 58 chain 5344 chr1 248956422 + 248649292 248649357 MER44C 733 + 524 589 83986 65 chain 108026 chr1 248956422 + 248676324 248677571 SVA_F 1814 + 6 1802 17322 143 11 0 85 1 0 273 0 156 41 2 0 31 0 410 129 1 0 224 1 0 300 1 0 4 chain 95340 chr1 248956422 + 248689669 248690929 L1P3 4156 + 2895 4139 18861 226 1 2 429 5 0 5 1 5 264 16 0 28 0 14 130 16 5 104 2 0 7 2 1 24 chain 36565 chr1 248956422 + 248712384 248712844 MER4A1 472 + 0 458 37035 99 0 2 42 7 3 312 chain 195430 chr1 248956422 + 248714854 248717595 MER4-int 2692 + 7 2689 9866 4 1 0 21 6 4 12 32 26 25 4 0 6 13 11 10 1 2 274 4 5 374 4 17 71 0 4 51 0 1 15 68 14 138 0 3 51 18 1 46 0 3 225 1 2 35 12 11 550 0 2 232 0 3 15 5 6 208 2 0 5 1 4 186 6 0 9 chain 30351 chr1 248956422 + 248717600 248718003 MER4A1 472 + 0 430 41714 106 0 1 118 10 31 28 1 0 63 0 6 77 chain 25531 chr1 248956422 + 248726737 248727082 L1PBa 3878 + 3400 3748 48436 78 0 1 236 2 1 4 0 5 13 2 0 10 chain 23475 chr1 248956422 + 248732593 248732931 MER4E 760 + 391 728 51625 10 0 1 4 2 1 5 1 0 197 1 0 4 24 25 90 chain 5012 chr1 248956422 + 248744044 248744136 Charlie1b 519 + 435 519 85605 44 20 12 28 chain 22128 chr1 248956422 + 248761357 248761636 L1PB 1623 + 469 747 53657 16 1 0 262 chain 555467 chr1 248956422 + 248761641 248767786 L1PA3long 6157 + 5 6153 384 480 0 1 1355 0 1 1326 5 3 769 3 5 1362 1 0 421 0 2 423 chain 97833 chr1 248956422 + 248829803 248830979 SVA_B 1603 + 54 1603 18545 369 0 116 116 38 1 13 0 281 77 3 0 142 0 4 103 0 7 176 0 5 139 chain 6051 chr1 248956422 + 248873854 248873961 tRNA-Leu-TTG 101 + 0 101 80895 38 22 17 11 2 1 34 chain 6844 chr1 248956422 + 248874247 248874319 tRNA-Glu-GAG_ 72 + 0 72 78161 72 chain 31259 chr1 248956422 + 248889502 248889914 LTR19B 566 + 0 424 40926 36 4 16 66 1 0 40 8 10 5 2 0 42 1 0 127 0 2 80 chain 48484 chr1 248956422 + 248896942 248897522 LTR10C 591 + 0 591 30126 158 0 10 92 1 0 248 0 2 81 chain 198767 chr1 248956422 + 248898452 248901320 L1PA10 4194 + 1276 4161 9753 370 0 2 111 2 0 6 0 2 6 8 10 43 1 2 311 38 40 30 0 1 16 0 4 116 0 6 168 0 1 5 2 21 82 10 11 16 3 0 7 9 4 36 6 7 54 7 6 184 10 2 26 0 1 142 6 0 10 2 0 5 0 3 26 6 5 211 0 1 37 5 6 196 0 1 422 72 69 33 1 0 11 chain 28982 chr1 248956422 + 248943353 248943663 AluYb8 318 + 4 314 43360 310 chain 369877 chr10 133797422 + 17502 22786 L1PB1 5432 + 19 5103 5660 25 14 15 342 1 0 78 0 3 126 8 11 776 1 0 15 9 10 183 0 1 126 22 17 499 1 0 9 13 21 99 0 4 64 0 1 50 13 1 46 0 4 40 0 2 207 2 0 114 0 1 29 15 16 251 0 1 207 4 5 318 18 1 65 204 0 34 5 4 112 4 5 40 3 4 349 1 2 265 8 5 154 1 0 8 3 15 83 2 3 145 7 0 7 12 19 47 chain 168150 chr10 133797422 + 29314 31939 L1PA7 6471 + 4102 6455 11209 385 5 6 49 2 0 5 1 3 112 12 16 20 1 2 149 1 0 8 7 8 33 5 1 64 1 0 4 1 0 4 0 3 123 0 1 52 6 4 5 0 2 142 2 1 198 0 2 51 1 5 62 0 2 292 0 25 67 1 2 112 7 25 59 328 1 248 chain 538399 chr10 133797422 + 35483 41484 L1PA3long 6157 + 19 6152 1433 134 0 1 163 1 0 263 0 4 165 0 1 26 0 128 1423 1 2 368 1 0 601 1 0 2854 chain 89111 chr10 133797422 + 60248 61230 L1PA3long 6157 + 5168 6152 19838 282 0 1 510 0 1 190 chain 51902 chr10 133797422 + 126548 127275 MER4A 717 + 0 717 28910 25 0 1 38 1 0 84 1 0 20 25 8 37 2 1 69 0 3 65 0 2 66 1 0 52 0 4 18 5 6 218 chain 7083 chr10 133797422 + 132191 132269 LTR12F 595 + 402 480 77317 78 chain 209171 chr10 133797422 + 150548 152994 L1P1 4361 + 442 2914 9379 98 0 2 277 0 17 260 0 1 31 0 1 299 0 2 6 3 1 945 0 4 438 0 1 89 chain 27781 chr10 133797422 + 187352 187649 AluYk11 308 + 0 297 45209 297 chain 86832 chr10 133797422 + 207585 208546 L1PA3long 6157 + 4434 5400 20253 725 0 5 236 chain 10201 chr10 133797422 + 295622 295739 L1MA5A 2387 + 1716 1833 70011 117 chain 62352 chr10 133797422 + 296344 297048 L1PA5 6144 + 5440 6144 25787 704 chain 2989 chr10 133797422 + 330000 330119 MER58A 224 + 45 189 99971 32 71 96 16 chain 7473 chr10 133797422 + 393955 394049 L1MA8 2339 + 1686 1780 76191 94 chain 17684 chr10 133797422 + 449595 449794 L1HS 6032 + 5833 6031 59023 185 1 0 13 chain 364065 chr10 133797422 + 460596 467958 L1PA7 6471 + 1844 6465 5753 17 0 1 78 0 1 225 0 5 348 0 2 78 0 1 16 0 11 12 6 8 247 0 3 170 0 3 198 0 1 228 1 0 69 0 4 89 0 3 258 1 0 10 0 1 156 7 15 278 1 2 38 0 13 24 0 3 85 0 1 142 0 4 165 0 4 124 2 0 76 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36 20 38 26 6 1 0 14 chain 360203 chr10 133797422 + 1258230 1262287 L1PA2 6032 + 1936 6014 5800 215 1 6 34 0 4 206 0 1 649 0 1 262 1 0 518 3 2 1348 0 4 149 0 8 671 chain 121385 chr10 133797422 + 1276569 1277922 L1P1 4361 + 2444 3800 15279 810 0 3 543 chain 548136 chr10 133797422 + 1302016 1308092 L1PA2 6032 + 2 6031 853 255 1 0 107 0 1 1357 0 4 843 1 0 417 25 0 975 6 0 676 22 0 545 0 4 5 1 0 840 chain 27616 chr10 133797422 + 1349015 1349409 LTR7 482 + 0 471 45438 69 8 46 58 3 0 51 9 41 50 1 11 145 chain 278639 chr10 133797422 + 1349422 1352980 HERVH-int 3825 + 0 3825 7465 158 1 0 110 0 1 63 1 0 34 4 3 22 146 404 279 6 14 7 0 2 46 0 9 34 8 1 39 15 0 197 0 1 5 9 0 226 4 1 123 2 4 223 0 4 96 0 2 189 0 1 51 0 4 24 8 17 692 0 3 736 chain 48816 chr10 133797422 + 1390871 1391470 LTR71B 605 + 0 605 30008 123 9 18 265 3 0 199 chain 46402 chr10 133797422 + 1434398 1435002 PABL_A 660 + 0 660 30886 71 10 19 157 0 44 61 0 1 51 0 1 176 0 1 78 chain 28675 chr10 133797422 + 1452443 1452806 L1PA7 6471 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56019 11 11 4 50 0 10 87 1 0 4 51 55 13 2 8 98 1 0 32 chain 205176 chr10 133797422 + 2767555 2770286 L1PB1 5432 + 2718 5418 9530 124 3 0 184 0 1 49 5 6 183 0 1 317 0 1 1030 9 7 11 6 2 69 0 2 89 1 0 9 42 47 252 13 12 24 1 0 9 1 0 9 2 0 3 2 0 8 2 0 53 2 1 15 1 0 45 1 0 15 1 0 4 1 0 5 13 3 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 14 chain 17774 chr10 133797422 + 2890564 2890766 L1PA2 6032 + 5835 6032 58925 186 5 0 11 chain 30133 chr10 133797422 + 2941556 2941961 L1PA8 5853 + 5445 5853 41903 117 1 0 48 2 0 68 2 1 61 2 1 19 2 1 52 0 9 31 chain 26337 chr10 133797422 + 2959837 2960207 L1PA8 5853 + 5489 5853 47217 67 9 8 41 6 4 73 1 0 6 1 0 55 1 0 17 2 1 4 0 1 87 chain 47709 chr10 133797422 + 2992229 2992861 PABL_A 660 + 0 660 30395 14 0 15 52 0 9 33 0 1 78 1 2 357 9 8 60 4 7 24 chain 82151 chr10 133797422 + 3061468 3062440 LTR5_Hs 974 + 0 974 21212 255 18 0 283 1 2 219 1 20 195 chain 7231 chr10 133797422 + 3160519 3160601 MER44A 345 + 136 218 76858 82 chain 6754 chr10 133797422 + 3198807 3198975 MLT1B 390 + 58 227 78462 63 69 70 36 chain 9373 chr10 133797422 + 3217493 3217670 MER30B 195 + 14 195 71764 40 33 41 53 9 5 42 chain 24464 chr10 133797422 + 3258955 3259251 AluY 311 + 6 298 50087 112 4 0 180 chain 6967 chr10 133797422 + 3297078 3297169 MSTA 426 + 0 93 77719 19 0 1 31 1 2 40 chain 27322 chr10 133797422 + 3354473 3354846 THE1C 375 + 0 375 45796 47 23 23 115 0 2 188 chain 32222 chr10 133797422 + 3371789 3372188 L1PA7 6471 + 6047 6446 40167 131 0 1 119 11 10 138 chain 34496 chr10 133797422 + 3507597 3508235 L1PB1 5432 + 4844 5422 38357 259 73 11 24 2 1 5 1 0 12 21 16 48 14 16 45 1 0 15 1 0 4 2 0 9 8 0 17 3 25 19 1 0 21 1 0 13 1 0 18 chain 20634 chr10 133797422 + 3550865 3551108 L1PA7 6471 + 6217 6468 55580 47 0 8 196 chain 31772 chr10 133797422 + 3621106 3621646 L1PB1 5432 + 4905 5422 40516 33 4 13 152 13 11 20 1 0 10 1 0 12 2 0 3 2 0 9 2 0 52 2 1 16 2 1 42 1 0 16 1 0 4 2 0 11 8 0 11 2 0 10 1 0 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 6074 chr10 133797422 + 3639246 3639332 L1P 111 + 20 109 80822 47 4 8 27 1 0 7 chain 20686 chr10 133797422 + 3705954 3706371 L1PB1 5432 + 5042 5427 55516 61 9 11 20 1 0 13 1 0 7 20 14 52 2 1 15 1 0 44 1 0 16 3 0 6 16 6 19 2 0 5 17 14 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 27853 chr10 133797422 + 3732163 3732521 THE1B 368 + 0 368 45103 44 0 15 110 1 0 22 5 1 176 chain 6100 chr10 133797422 + 3741405 3741575 MLT2B2 565 + 2 159 80730 15 0 2 44 81 66 30 chain 13614 chr10 133797422 + 3772296 3772448 L1PA2 6032 + 4857 5020 64147 145 0 11 7 chain 3109 chr10 133797422 + 3846081 3846118 MADE1 96 - 1 38 98708 37 chain 103047 chr10 133797422 + 3953213 3954537 L1PA8 5853 + 4524 5853 17945 142 1 0 345 4 2 86 1 10 414 0 6 35 2 1 43 2 0 70 2 1 11 1 0 49 3 2 21 1 0 91 chain 33139 chr10 133797422 + 4139847 4140298 MLT2A1 477 + 0 477 39413 86 0 3 51 0 1 27 1 5 212 3 1 6 19 0 8 0 39 38 chain 23784 chr10 133797422 + 4184282 4184764 L1PB1 5432 + 4983 5430 51136 120 5 4 7 1 0 24 10 8 12 15 9 44 13 12 13 1 0 45 1 0 8 1 0 4 27 15 19 8 5 14 2 0 24 1 0 14 0 1 6 1 0 13 1 0 16 2 0 10 chain 38539 chr10 133797422 + 4237283 4237820 L1PB1 5432 + 4411 4920 35679 165 0 1 48 24 1 58 7 0 189 2 3 44 chain 56619 chr10 133797422 + 4446005 4446758 L1PA8A 6298 + 5542 6290 27381 38 4 1 108 1 2 78 14 3 144 0 2 53 0 1 183 0 1 89 11 15 30 chain 3431 chr10 133797422 + 4516217 4516268 MADE1 96 + 39 93 95808 6 0 3 11 1 0 6 0 1 27 chain 22046 chr10 133797422 + 4544630 4544955 L1PA8 5853 + 5539 5853 53776 23 1 0 37 1 0 9 2 0 71 1 0 14 4 0 43 10 9 15 1 0 93 chain 81666 chr10 133797422 + 4597878 4598775 L1PA3long 6157 + 5261 6157 21307 747 1 0 149 chain 16323 chr10 133797422 + 4736402 4736651 L1PA8 5853 + 5608 5853 60602 69 1 0 10 2 1 52 2 1 19 16 15 78 chain 19836 chr10 133797422 + 4752373 4752660 L1PA8 5853 + 5569 5853 56625 39 2 0 6 0 4 64 1 0 6 2 0 52 2 1 18 2 1 93 chain 4377 chr10 133797422 + 4760621 4760670 MER85 139 + 2 51 89014 49 chain 3642 chr10 133797422 + 4775952 4776211 L1MC3 1789 + 121 379 94086 17 197 196 45 chain 56013 chr10 133797422 + 4805765 4806442 L1PA8A 6298 + 5613 6290 27560 677 chain 35799 chr10 133797422 + 4853676 4854488 MER41A 554 + 0 529 37527 128 0 1 50 4 18 68 15 34 131 319 0 61 7 9 29 chain 27256 chr10 133797422 + 4857204 4857633 MSTA 426 + 0 425 45885 133 3 0 10 0 7 48 0 3 6 67 56 162 chain 186793 chr10 133797422 + 4862731 4864806 L1P1 4361 + 2248 4328 10261 183 0 4 1277 0 1 397 0 2 38 1 0 155 1 0 23 chain 57185 chr10 133797422 + 4896897 4897540 L1PA4 6152 + 4712 5353 27201 465 3 1 175 chain 117296 chr10 133797422 + 4899015 4900371 L1PA6 6164 + 4756 6116 16000 555 12 16 789 chain 3061 chr10 133797422 + 4923815 4923851 MER50 708 + 147 184 99212 27 0 1 9 chain 36975 chr10 133797422 + 4970565 4970973 L1PA2 6032 + 5624 6032 36754 408 chain 29727 chr10 133797422 + 5035129 5035473 LTR14A 344 + 0 344 42330 344 chain 127589 chr10 133797422 + 5035677 5037344 HERVK14-int 1672 + 1 1665 14343 29 1 0 11 1 0 49 1 0 155 1 4 21 1 0 34 2 1 34 2 0 227 2 1 46 1 0 68 1 0 64 1 3 71 1 0 162 2 1 16 0 10 49 9 7 8 2 0 28 6 5 23 0 1 7 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115 2 3 47 1 0 92 0 2 7 1 0 107 0 6 50 1 0 80 0 3 51 0 3 195 8 18 47 1 3 115 6 5 231 5 6 112 0 2 54 1 0 10 0 4 123 5 7 68 1 0 16 4 6 172 1 6 357 5 6 63 10 9 25 2 1 55 10 8 54 0 3 177 1 0 167 0 4 306 3 7 36 0 4 37 81 8 46 7 12 20 0 15 99 0 4 115 0 4 23 1 0 162 5 12 179 0 2 111 0 2 5 0 5 204 1 3 72 1 0 72 4 11 67 6 7 53 0 2 255 1 4 43 0 2 19 1 0 123 0 4 12 0 2 234 0 3 20 1 7 69 0 4 6 1 0 14 0 5 56 11 17 11 7 10 68 0 2 73 0 2 343 1 0 89 1 0 21 0 1 4 1 0 35 0 3 58 chain 566219 chr10 133797422 + 5245354 5251383 L1HS 6032 + 1 6030 60 6029 chain 4426 chr10 133797422 + 5253807 5253858 MLT1A0 366 + 89 140 88761 51 chain 296421 chr10 133797422 + 5254796 5258295 L1PA5 6144 + 2629 6143 6936 123 1 0 193 0 2 132 0 4 93 5 2 65 0 3 12 0 2 249 1 0 35 0 1 136 4 0 160 11 12 183 2 1 307 0 4 798 0 5 117 4 8 18 3 0 570 1 0 34 0 3 242 chain 9853 chr10 133797422 + 5321711 5321818 SVA_A 1864 + 1757 1864 70715 107 chain 37470 chr10 133797422 + 5333130 5333556 L1PA7 6471 + 6046 6468 36423 256 1 0 157 3 0 9 chain 49575 chr10 133797422 + 5345065 5345620 L1PA4 6152 + 5593 6148 29740 555 chain 3216 chr10 133797422 + 5433436 5433471 MER58B 340 + 305 340 97750 35 chain 25831 chr10 133797422 + 5470767 5471177 LTR7 482 + 0 482 47971 51 7 8 10 6 95 21 51 0 39 5 37 104 1 2 115 chain 319593 chr10 133797422 + 5471179 5475360 HERVH-int 3825 + 0 3825 6413 35 2 0 66 1 3 428 5 0 38 1 0 10 1 0 24 28 0 14 1 0 12 4 1 10 17 17 43 1 0 18 0 1 7 1 0 52 0 1 4 2 0 647 9 0 44 1 0 78 310 0 19 5 0 98 0 1 5 0 3 407 8 13 1356 0 1 369 chain 1231 chr10 133797422 + 5471791 5471818 HERVH-int 3825 + 656 683 86538 27 chain 25815 chr10 133797422 + 5476604 5477012 LTR7 482 + 0 482 47997 54 4 5 10 29 17 46 2 53 39 5 37 44 0 1 59 1 2 115 chain 12490 chr10 133797422 + 5517571 5517730 MER87B 500 + 0 159 66000 159 chain 38686 chr10 133797422 + 5586380 5587028 MER4A1_ 611 + 0 611 35572 110 19 21 79 64 47 29 24 7 29 10 0 60 5 10 219 chain 5298 chr10 133797422 + 5625162 5625242 MADE1 96 - 0 96 84202 38 6 22 36 chain 9710 chr10 133797422 + 5771373 5771532 MER30B 195 + 17 189 71028 35 11 12 22 1 16 51 3 0 36 chain 13110 chr10 133797422 + 5774172 5774356 MER50 708 + 514 696 64915 30 5 1 90 5 7 54 chain 64309 chr10 133797422 + 5777484 5778289 L1PA7 6471 + 5664 6467 25347 34 0 2 55 31 24 541 3 5 15 0 3 116 2 0 8 chain 45581 chr10 133797422 + 6005369 6005922 MER41A 554 + 0 554 31271 457 0 1 96 chain 26499 chr10 133797422 + 6008033 6008410 LTR7B 505 + 0 494 46979 108 0 10 53 19 87 53 1 42 88 14 13 20 0 1 5 2 0 14 chain 5861 chr10 133797422 + 6060374 6060454 L1PB1 5432 + 5346 5423 81644 24 1 0 22 1 0 12 1 0 19 chain 20303 chr10 133797422 + 6149622 6149861 7SK 245 + 0 239 56014 239 chain 14478 chr10 133797422 + 6254577 6254760 MER47A 366 + 92 281 62921 93 0 6 90 chain 13044 chr10 133797422 + 6287439 6287603 Tigger3a 397 + 162 326 65039 164 chain 23257 chr10 133797422 + 6402058 6402345 L1PA7 6471 + 6170 6465 51990 188 0 11 90 3 0 6 chain 480655 chr10 133797422 + 6448785 6454080 L1PA3long 6157 + 844 6156 3616 1548 0 4 156 1 0 148 0 5 1198 0 1 304 0 1 148 0 4 949 0 4 510 1 0 332 chain 10321 chr10 133797422 + 6476037 6476164 MER85 139 + 1 139 69759 90 1 12 36 chain 3794 chr10 133797422 + 6506434 6506478 U5 65 + 5 49 92892 44 chain 30798 chr10 133797422 + 6547156 6547489 L1PA3long 6157 + 4419 4752 41310 333 chain 128279 chr10 133797422 + 6547489 6548892 L1PA3long 6157 + 4753 6157 14247 1349 0 1 54 chain 17425 chr10 133797422 + 6590485 6590850 L1PB1 5432 + 5085 5422 59321 18 1 2 10 3 0 23 1 0 9 16 11 8 0 1 53 2 1 16 1 0 43 1 0 16 3 0 9 53 41 24 1 0 21 1 0 13 1 0 18 chain 19582 chr10 133797422 + 6641719 6641930 L1PA4 6152 + 5739 5950 56919 211 chain 35307 chr10 133797422 + 6641974 6642444 MER4A1 472 + 0 472 37822 141 18 19 70 1 2 240 chain 9159 chr10 133797422 + 6661368 6661486 L1PB1 5432 + 5165 5281 72212 55 2 1 16 1 0 44 chain 88148 chr10 133797422 + 6661490 6663484 L1PA6 6164 + 4786 6151 20022 531 0 6 158 955 320 350 chain 59731 chr10 133797422 + 6676914 6677602 L1PA5 6144 + 5438 6128 26452 176 0 2 512 chain 11896 chr10 133797422 + 6715904 6716078 L1PA8 5853 + 5679 5853 67018 61 2 1 19 1 0 71 1 3 19 chain 38795 chr10 133797422 + 6779419 6779959 MLT2A2 560 + 0 546 35504 55 7 9 87 0 7 11 12 0 139 10 7 84 2 14 133 chain 7175 chr10 133797422 + 6850749 6850855 Tigger3c 601 + 346 452 77030 51 1 0 8 4 5 42 chain 305718 chr10 133797422 + 6858693 6862057 L1PA3long 6157 + 2647 6053 6702 3341 0 42 23 chain 52053 chr10 133797422 + 6906312 6906876 L1PA3long 6157 + 4816 5384 28862 494 0 4 70 chain 71056 chr10 133797422 + 6906877 6907650 L1PA3long 6157 + 5384 6157 23751 773 chain 3562 chr10 133797422 + 6938803 6938842 MER63B 433 + 346 385 94736 39 chain 126288 chr10 133797422 + 6967564 6969553 L1PB1 5432 + 3473 5426 14509 66 0 1 42 8 9 61 10 47 22 22 0 10 1 7 160 0 6 29 0 1 58 1 0 450 0 6 6 6 0 23 0 1 27 1 4 119 3 0 80 1 0 89 0 1 4 1 7 186 1 3 16 0 2 80 73 18 24 8 6 10 9 5 9 2 0 42 2 11 10 13 12 38 1 0 12 26 15 18 12 9 11 2 0 24 1 0 22 1 0 12 1 0 14 1 0 8 chain 55709 chr10 133797422 + 6991918 6992542 SVA_D 2077 + 1433 2077 27662 5 0 1 192 3 1 4 0 1 286 0 20 134 chain 68219 chr10 133797422 + 7004481 7005328 L1PA8A 6298 + 4955 5797 24400 196 1 0 22 10 0 316 7 13 78 1 0 33 0 1 183 chain 20592 chr10 133797422 + 7029660 7029972 THE1B 368 + 0 306 55653 120 1 0 50 3 0 30 35 33 73 chain 47015 chr10 133797422 + 7037429 7037955 L1PA5 6144 + 5616 6143 30652 373 0 1 153 chain 17695 chr10 133797422 + 7050050 7050383 THE1B 368 + 0 341 59016 44 0 15 43 73 71 27 16 12 82 1 0 47 chain 56202 chr10 133797422 + 7079305 7080100 L1PB 1623 + 554 1357 27508 143 9 0 78 0 4 122 0 1 61 47 66 269 7 0 59 chain 6594 chr10 133797422 + 7137451 7137546 L1P1 4361 + 8 90 78529 23 14 1 58 chain 498886 chr10 133797422 + 7137546 7142956 L1PA2 6032 + 620 6032 3166 1610 0 2 3800 chain 17993 chr10 133797422 + 7181016 7181256 AluSc 308 + 58 297 58661 199 10 9 31 chain 17879 chr10 133797422 + 7190804 7191153 THE1B 368 + 0 357 58788 100 23 24 50 67 75 57 7 6 45 chain 32768 chr10 133797422 + 7212804 7213245 L1PA8 5853 + 5418 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6470 50193 295 chain 6211 chr10 133797422 + 7719814 7719892 L1PB4 2604 + 2474 2552 80313 78 chain 19536 chr10 133797422 + 7751867 7752071 AluYb8 318 + 114 318 56977 204 chain 19509 chr10 133797422 + 7754363 7754586 AluSc 308 + 11 234 57009 223 chain 11799 chr10 133797422 + 7761530 7761719 Tigger4b 360 + 13 228 67211 14 1 8 80 15 36 5 2 0 72 chain 4707 chr10 133797422 + 7774139 7774194 MER58A 224 + 169 224 87212 55 chain 23456 chr10 133797422 + 7858990 7859260 AluY 311 + 10 282 51659 122 0 1 12 0 1 136 chain 22548 chr10 133797422 + 7902167 7902446 AluSp 311 + 26 301 53045 265 4 0 10 chain 19936 chr10 133797422 + 7963567 7963816 L1PA6 6164 + 5915 6162 56471 58 2 0 189 chain 5100 chr10 133797422 + 8279797 8279874 MER3 215 + 130 207 85161 44 2 3 26 1 0 4 chain 21593 chr10 133797422 + 8419921 8420181 L1PA7 6471 + 6207 6468 54369 95 0 1 165 chain 18621 chr10 133797422 + 8463270 8463489 L1PA3long 6157 + 5936 6157 57978 7 0 1 205 0 1 7 chain 12643 chr10 133797422 + 8493969 8494138 L1PA8 5853 + 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309 43667 132 3 0 177 chain 21908 chr10 133797422 + 9660355 9660620 AluSp 311 + 38 303 53961 265 chain 26992 chr10 133797422 + 9682408 9682779 THE1B 368 + 0 368 46285 172 23 20 176 chain 3707 chr10 133797422 + 9741157 9741202 MER41A 554 + 399 444 93566 45 chain 100352 chr10 133797422 + 9831412 9832499 L1PA3long 6157 + 5070 6157 18253 1087 chain 15041 chr10 133797422 + 9840562 9840730 L1PA4 6152 + 5980 6151 62211 23 0 3 145 chain 15172 chr10 133797422 + 9840781 9841137 L1PB1 5432 + 5091 5422 62069 7 0 8 8 3 0 24 1 0 4 3 2 14 5 1 9 2 0 45 9 8 16 1 0 16 6 7 21 1 0 20 19 7 18 3 1 5 1 0 14 2 0 24 1 0 22 2 1 11 1 0 18 chain 38503 chr10 133797422 + 9844133 9844690 LTR10A 586 + 0 559 35706 107 8 9 66 1 0 20 5 6 73 1 2 45 13 14 104 11 12 45 8 6 50 chain 518008 chr10 133797422 + 9957947 9963735 L1PA3long 6157 + 392 6157 2368 1044 30 0 277 0 1 1456 2 1 1054 1 0 132 0 4 256 0 4 679 1 0 642 0 1 214 chain 25086 chr10 133797422 + 9983986 9984344 THE1B 368 + 2 368 49141 11 2 0 27 0 5 29 3 1 97 3 2 132 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14106790 14107255 L1PA16 3655 + 3174 3619 43787 30 15 14 35 0 9 21 20 18 277 3 0 14 18 0 11 5 0 16 chain 27539 chr10 133797422 + 14135161 14135586 MER57A1 433 + 0 426 45535 32 1 0 215 74 76 103 chain 13299 chr10 133797422 + 14165027 14165264 L1PA17 2846 + 2377 2600 64618 129 42 27 38 6 9 12 2 0 8 chain 12693 chr10 133797422 + 14213959 14214150 THE1B 368 + 118 311 65634 50 2 1 29 0 3 9 0 4 14 3 2 12 1 0 64 2 0 5 chain 7316 chr10 133797422 + 14298015 14298191 MER58A 224 + 26 209 76616 58 74 81 44 chain 19850 chr10 133797422 + 14321767 14322154 MSTA 426 + 0 426 56611 40 1 0 60 28 52 47 1 48 11 51 0 30 12 32 106 chain 24685 chr10 133797422 + 14376407 14376694 AluSp 311 + 10 297 49756 287 chain 40952 chr10 133797422 + 14376727 14377272 MLT2A2 560 + 0 560 34001 13 0 1 155 40 39 194 0 11 135 0 4 8 chain 45005 chr10 133797422 + 14387837 14388404 LTR66 600 + 0 575 31582 400 4 10 47 1 2 62 0 1 53 chain 4337 chr10 133797422 + 14396040 14396090 MADE1 96 + 46 96 89248 50 chain 40666 chr10 133797422 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chain 39718 chr10 133797422 + 14662797 14663345 MLT2A2 560 + 0 560 34879 183 1 0 213 5 17 68 40 40 28 0 1 10 chain 17667 chr10 133797422 + 14664493 14664711 Tigger3a 397 + 155 373 59046 218 chain 33701 chr10 133797422 + 14679651 14680102 MLT2A2 560 + 0 560 38925 140 1 2 38 1 0 122 2 111 147 chain 29557 chr10 133797422 + 14682550 14682901 L1PA7 6471 + 6119 6470 42543 351 chain 40391 chr10 133797422 + 14687896 14688439 MLT2A2 560 + 0 560 34392 9 0 1 396 0 11 65 41 46 32 chain 44240 chr10 133797422 + 14729653 14730204 L1PA8 5853 + 5309 5853 31989 255 1 0 46 2 0 70 1 0 7 2 1 52 2 1 19 1 0 93 chain 15195 chr10 133797422 + 14734376 14734603 MER30 238 + 0 234 62047 89 23 33 71 3 0 41 chain 57361 chr10 133797422 + 14777229 14777922 L1PA6 6164 + 5475 6162 27139 376 0 6 7 6 0 151 0 1 140 7 0 6 chain 5455 chr10 133797422 + 14779131 14779192 MER41B 635 + 24 85 83436 61 chain 115679 chr10 133797422 + 14793470 14794738 L1PA4 6152 + 4250 5518 16291 1268 chain 2056 chr10 133797422 + 14812450 14812475 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133797422 + 17287906 17288049 MER4A 717 + 575 717 68282 136 1 0 6 chain 93053 chr10 133797422 + 17311424 17312588 L1PA8A 6298 + 5113 6280 19174 41 0 1 334 3 6 677 20 19 89 chain 175677 chr10 133797422 + 17382566 17385066 MER4-int 2692 + 155 2689 10794 25 2 1 415 0 1 31 0 3 83 18 17 33 1 5 143 1 0 187 0 4 20 0 3 23 2 1 25 1 0 189 2 0 22 5 21 25 6 5 25 5 6 81 0 4 199 1 3 130 0 4 179 0 1 30 5 6 23 2 0 13 0 1 11 1 4 26 4 0 88 5 18 21 0 1 4 1 0 133 0 1 13 1 0 26 3 5 22 1 0 41 2 15 5 2 0 67 37 12 34 chain 211647 chr10 133797422 + 17400541 17402936 L1PA5 6144 + 3739 6144 9296 15 0 3 41 0 1 1228 1 0 264 0 4 473 0 5 204 7 6 143 1 0 18 chain 8461 chr10 133797422 + 17403507 17403609 HY1 111 + 0 102 73769 102 chain 30692 chr10 133797422 + 17432677 17433109 MER57A1 433 + 0 422 41391 28 0 3 227 42 29 135 chain 6994 chr10 133797422 + 17437027 17437121 MER65C 458 + 323 416 77625 72 1 0 21 chain 22286 chr10 133797422 + 17470251 17470604 THE1B 368 + 9 368 53428 99 7 8 58 22 18 56 1 2 51 2 0 8 4 14 45 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133797422 + 17786743 17787117 THE1A 353 + 0 353 45113 103 28 7 243 chain 4391 chr10 133797422 + 17821421 17821476 MLT2D 439 + 5 60 88936 55 chain 5547 chr10 133797422 + 17902801 17902867 U4 144 + 0 66 83046 66 chain 81708 chr10 133797422 + 17946362 17947375 L1P3 4156 + 2511 3539 21297 104 0 1 18 1 3 10 3 2 444 0 4 390 0 1 10 0 8 33 chain 6926 chr10 133797422 + 18017035 18017123 LTR23 429 + 311 401 77860 83 0 2 5 chain 3490 chr10 133797422 + 18078128 18078167 LTR37B 484 + 441 480 95315 39 chain 25345 chr10 133797422 + 18119082 18119444 THE1C 375 + 5 373 48718 36 0 3 24 1 2 216 6 8 13 8 9 34 1 0 23 chain 15861 chr10 133797422 + 18166718 18166903 L1PA4 6152 + 5965 6151 61216 181 0 1 4 chain 5679 chr10 133797422 + 18206932 18207006 MER44A 345 + 76 158 82436 25 0 8 49 chain 12733 chr10 133797422 + 18241399 18241547 L1PA7 6471 + 6274 6423 65557 7 0 1 141 chain 64704 chr10 133797422 + 18282819 18283560 L1PA5 6144 + 5128 5874 25265 14 0 5 147 1 0 161 0 1 418 chain 23609 chr10 133797422 + 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104 0 1 67 1 0 27 1 0 52 7 6 18 4 0 10 1 0 50 6 3 31 18 12 13 6 2 28 chain 42811 chr10 133797422 + 18752408 18752960 LTR10F 562 + 1 562 32883 105 1 29 20 28 0 77 0 3 10 0 6 311 chain 24932 chr10 133797422 + 18789441 18789790 THE1B 368 + 0 368 49379 35 14 29 108 3 2 22 1 3 33 1 0 74 0 4 58 chain 16120 chr10 133797422 + 18810857 18811062 L1PA6 6164 + 5962 6162 60872 40 4 1 151 2 0 8 chain 87887 chr10 133797422 + 18818333 18819305 L1PA4 6152 + 4548 5521 20070 876 0 1 96 chain 400825 chr10 133797422 + 18970454 18975031 L1PA5 6144 + 1183 5774 5140 93 6 1 406 5 19 177 0 1 434 1 0 660 0 1 2322 0 4 473 chain 59004 chr10 133797422 + 18990474 18991183 L1PA5 6144 + 4428 5116 26665 519 22 1 168 chain 487564 chr10 133797422 + 18993141 18998592 L1PA3long 6157 + 564 6156 3479 212 0 128 608 0 1 427 0 1 16 0 1 475 0 5 1345 1 2 575 0 4 943 1 0 695 0 1 153 chain 57553 chr10 133797422 + 19004434 19005077 L1PA5 6144 + 5485 6128 27090 643 chain 29698 chr10 133797422 + 19016771 19017122 L1PA7 6471 + 6114 6465 42369 351 chain 19795 chr10 133797422 + 19032801 19033034 L1PA8 5853 + 5354 5586 56686 210 1 0 22 chain 20921 chr10 133797422 + 19063714 19063940 L1PA3long 6157 + 5918 6144 55236 226 chain 49722 chr10 133797422 + 19160976 19161515 L1HS 6032 + 5492 6031 29673 539 chain 3759 chr10 133797422 + 19162078 19162126 MER3 215 + 115 163 93136 48 chain 46297 chr10 133797422 + 19286543 19287041 L1PA2 6032 + 3239 3737 30922 498 chain 85719 chr10 133797422 + 19559577 19560965 L1PA7 6471 + 5397 6466 20499 119 0 2 102 3 1 135 20 22 215 324 0 319 1 4 150 chain 18659 chr10 133797422 + 19594304 19594620 L1PB2 3958 + 3524 3838 57936 21 25 24 13 1 2 34 1 0 63 1 0 32 3 5 4 0 1 25 7 5 22 1 0 63 chain 207323 chr10 133797422 + 19692889 19695225 L1PA5 6144 + 3796 6138 9449 1495 0 4 329 0 1 466 0 1 46 chain 25303 chr10 133797422 + 19698843 19699203 L1PA8 5853 + 5495 5849 48776 26 1 0 39 1 0 49 2 0 10 0 1 47 1 2 13 1 0 11 8 7 37 6 5 18 1 0 89 chain 9083 chr10 133797422 + 19713047 19713167 LTR9B 643 + 445 562 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20079132 20079949 L1PA8 5853 + 4972 5853 25887 31 4 0 6 0 2 7 0 1 273 0 61 22 0 1 5 5 15 168 1 0 46 2 0 67 13 11 51 3 2 19 1 0 93 chain 43259 chr10 133797422 + 20139505 20140011 L1PA7 6471 + 5961 6467 32605 506 chain 22212 chr10 133797422 + 20184835 20185164 L1PA8 5853 + 5531 5853 53532 33 6 5 40 2 0 69 12 10 52 2 1 18 3 2 92 chain 12194 chr10 133797422 + 20190461 20190591 L1PA5 6144 + 5998 6128 66485 130 chain 7601 chr10 133797422 + 20226308 20226409 MER30 238 + 140 238 75865 58 3 0 40 chain 10060 chr10 133797422 + 20282594 20282722 MER85 139 + 0 138 70284 89 0 10 39 chain 29091 chr10 133797422 + 20378330 20378640 AluYa5 310 + 0 309 43203 132 1 0 177 chain 93205 chr10 133797422 + 20420356 20421402 L1PA5 6144 + 5097 6144 19158 197 0 1 849 chain 8034 chr10 133797422 + 20452947 20453050 L1MB8 1703 + 1217 1318 74793 42 2 0 59 chain 9413 chr10 133797422 + 20474775 20474959 MLT2A1 477 + 292 477 71673 69 40 20 14 1 0 9 2 25 28 1 0 20 chain 14663 chr10 133797422 + 20486415 20486635 MER30 238 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2205 2374 64769 6 1 0 163 chain 29303 chr10 133797422 + 20932210 20932589 L1PA8 5853 + 5485 5853 42888 79 1 0 46 2 0 69 1 0 7 4 0 13 1 0 41 2 1 19 1 0 93 chain 538707 chr10 133797422 + 20937453 20943600 L1PA4 6152 + 0 6152 1414 1234 0 1 498 0 4 1445 0 1 8 4 3 667 0 2 77 0 1 322 4 0 1022 0 1 578 1 0 116 25 25 20 0 1 126 chain 19948 chr10 133797422 + 20949171 20949462 L1PA8 5853 + 5568 5853 56461 40 2 0 70 2 1 14 1 0 51 2 1 11 8 7 90 chain 9604 chr10 133797422 + 21001652 21001768 MER85 139 + 0 126 71260 90 0 10 26 chain 14722 chr10 133797422 + 21008497 21008695 L1P5 443 + 3 214 62638 4 1 0 174 3 17 16 chain 3243 chr10 133797422 + 21052948 21053007 L1MA4 2864 + 2746 2804 97540 18 10 9 31 chain 8036 chr10 133797422 + 21075925 21076161 L1MB3 1562 + 828 1062 74788 59 42 44 10 5 4 27 20 19 18 25 23 30 chain 12068 chr10 133797422 + 21090360 21090515 MER2 342 + 112 273 66719 29 0 5 54 0 1 72 chain 156070 chr10 133797422 + 21110902 21112749 L1PA6 6164 + 4312 6162 11999 460 0 3 249 0 1 100 0 1 182 1 0 31 0 1 493 1 2 204 0 1 44 4 0 78 chain 15876 chr10 133797422 + 21140736 21140957 L1PA8 5853 + 5636 5853 61184 41 3 2 13 1 0 48 3 2 17 2 1 93 chain 16140 chr10 133797422 + 21186549 21186779 MER30 238 + 0 238 60829 100 12 23 76 3 0 39 chain 4233 chr10 133797422 + 21256487 21256542 MER63B 433 + 92 148 89926 15 0 1 40 chain 41482 chr10 133797422 + 21282661 21283534 MER41A 554 + 0 544 33685 19 3 1 141 1 0 4 326 4 107 4 0 268 chain 31133 chr10 133797422 + 21285227 21285662 MER4A1 472 + 0 453 41029 29 0 1 158 12 19 12 7 15 166 2 4 49 chain 9916 chr10 133797422 + 21321960 21322067 U6 107 + 0 107 70583 107 chain 108634 chr10 133797422 + 21322069 21323242 L1PA2 6032 + 4843 6016 17229 1173 chain 3022 chr10 133797422 + 21331263 21331298 MADE1 96 + 49 84 99634 35 chain 73034 chr10 133797422 + 21351141 21352155 MER11A 1151 + 0 1144 23308 64 1 100 12 8 0 54 5 6 58 4 0 149 0 1 94 0 1 35 20 19 91 0 2 4 1 0 120 0 26 14 1 24 10 18 0 32 0 9 42 1 0 16 0 1 160 chain 23705 chr10 133797422 + 21374086 21374376 HERVL-int 5654 + 3184 3471 51272 204 5 1 56 0 1 25 chain 7221 chr10 133797422 + 21385810 21385912 MER39 703 + 2 104 76879 20 1 0 44 0 2 31 1 0 5 chain 15450 chr10 133797422 + 21386852 21387057 MER4B 649 + 1 204 61725 23 13 11 169 chain 7298 chr10 133797422 + 21392243 21392334 MER49 923 + 160 250 76672 65 1 0 25 chain 11938 chr10 133797422 + 21408280 21408447 MER34C_ 573 + 379 542 66938 41 1 0 98 5 2 22 chain 5462 chr10 133797422 + 21409057 21409245 MER87 546 + 21 204 83392 22 85 78 28 8 11 11 1 0 33 chain 4019 chr10 133797422 + 21430261 21430305 SVA_F 1814 + 962 1006 51481 44 chain 79856 chr10 133797422 + 21430305 21431220 SVA_F 1814 + 647 1814 21650 13 5 4 65 0 169 50 0 15 38 1 0 2 0 77 48 1 0 42 4 0 11 1 0 623 1 0 10 chain 6313 chr10 133797422 + 21481741 21481814 HY3 101 + 26 99 79952 73 chain 533247 chr10 133797422 + 21778616 21785061 L1PA5 6144 + 0 6144 1696 2312 3 0 67 0 4 282 0 6 153 309 0 228 12 17 101 1 0 90 0 4 320 11 1 323 0 1 1269 4 6 352 0 1 458 1 0 149 chain 80284 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225 0 16 544 chain 3258 chr10 133797422 + 22145968 22146138 LTR12F 595 + 145 248 97390 32 42 41 16 67 1 13 chain 17811 chr10 133797422 + 22179814 22180225 MSTB1 431 + 0 431 58878 21 0 1 5 1 2 25 29 29 47 13 20 20 2 0 36 3 9 14 51 52 33 23 29 88 chain 77185 chr10 133797422 + 22565287 22566338 MER11C 1089 + 0 1073 22267 246 0 9 62 0 4 21 1 0 43 1 0 147 47 46 112 1 5 4 1 0 38 0 1 49 0 8 68 0 1 56 1 0 14 1 0 128 0 1 10 chain 411695 chr10 133797422 + 22744433 22749052 L1PA4 6152 + 1534 6152 5008 401 9 0 385 2 0 501 0 1 2040 0 4 1275 0 5 6 chain 358683 chr10 133797422 + 22857456 22861429 L1PA4 6152 + 2177 6151 5812 3216 4 5 753 chain 42909 chr10 133797422 + 22869302 22869846 MLT2A2 560 + 0 560 32830 399 3 14 76 0 1 60 0 4 6 chain 18105 chr10 133797422 + 22871358 22871922 LTR26E 604 + 22 553 58563 36 123 64 21 49 93 71 15 0 62 6 10 25 79 73 23 2 1 52 chain 41432 chr10 133797422 + 22871943 22872526 MER4E1 777 + 1 777 33715 16 1 2 6 1 0 120 1 184 134 0 27 48 10 6 48 0 1 4 20 6 174 chain 216342 chr10 133797422 + 22882937 22885649 L1PA7 6471 + 3805 6470 9140 204 1 0 5 14 8 235 1 2 1103 0 1 5 1 0 252 2 1 9 10 0 212 32 0 471 0 1 138 0 6 6 5 0 6 chain 460641 chr10 133797422 + 22885657 22891094 L1PA4 6152 + 6 6143 4112 1150 0 3 53 3 4 16 4 5 496 0 4 110 0 5 114 1 0 246 11 4 136 1 3 587 0 3 238 1 0 548 0 1 12 0 682 651 1 2 222 5 9 681 6 0 6 1 11 73 2 0 62 chain 49370 chr10 133797422 + 22897845 22898719 L1PB1 5432 + 4630 5422 29809 167 9 10 187 22 16 93 56 10 25 1 0 8 1 0 10 22 16 48 2 1 15 1 0 43 6 5 18 18 6 18 3 1 5 1 0 14 2 0 21 4 3 22 1 0 12 1 0 18 chain 175340 chr10 133797422 + 23152706 23154612 L1PA3long 6157 + 4250 6157 10813 926 0 1 980 chain 45627 chr10 133797422 + 23180652 23181157 L1PA5 6144 + 5627 6132 31251 505 chain 473796 chr10 133797422 + 23224131 23229595 L1PA5 6144 + 732 6142 3773 683 0 5 26 0 4 1086 69 0 1146 0 3 923 2 1 352 0 1 237 0 1 97 0 4 66 4 5 434 1 2 327 4 0 7 chain 26000 chr10 133797422 + 23252835 23253190 THE1B 368 + 0 368 47717 15 2 0 25 0 5 127 2 1 128 7 18 49 chain 139294 chr10 133797422 + 23286962 23288581 L1PA8A 6298 + 4666 6291 13156 560 0 1 134 0 3 41 0 2 77 1 0 84 1 3 152 0 1 49 1 0 411 1 0 107 chain 12810 chr10 133797422 + 23373409 23373622 LTR26B 539 + 0 202 65429 18 0 1 68 17 23 29 0 1 23 21 2 37 chain 5879 chr10 133797422 + 23406036 23406271 MER90a 614 + 363 606 81560 36 77 80 22 62 67 38 chain 25794 chr10 133797422 + 23489111 23489435 THE1A 353 + 0 323 48022 109 2 1 213 chain 120988 chr10 133797422 + 23544333 23545862 THE1A-int 1579 + 0 1556 15349 64 0 8 72 11 34 183 20 18 449 4 5 26 5 3 618 1 0 76 chain 24918 chr10 133797422 + 23545885 23546230 THE1A 353 + 0 353 49400 79 5 6 25 2 10 54 0 1 7 1 0 5 0 1 14 1 0 120 1 0 31 chain 41581 chr10 133797422 + 23552106 23552634 MLT2A2 560 + 0 560 33637 192 14 17 184 0 29 138 chain 3152 chr10 133797422 + 23558117 23558198 MIRb 242 + 26 105 98347 15 31 29 35 chain 117229 chr10 133797422 + 23680271 23681571 L1PA3long 6157 + 4841 6157 16012 198 0 1 270 0 4 116 0 11 716 chain 228334 chr10 133797422 + 23761836 23764897 L1PA8A 6298 + 3402 6283 8791 45 0 7 243 2 0 3 13 0 179 0 1 4 5 3 25 21 26 168 1 0 248 0 1 177 0 3 55 0 1 32 1 2 447 0 1 9 0 13 190 208 0 204 0 2 58 8 9 233 0 9 76 4 5 402 chain 62982 chr10 133797422 + 23800708 23801475 L1PA7 6471 + 5693 6459 25632 616 13 12 138 chain 2784 chr10 133797422 + 23831140 23831171 L1M3 994 + 705 736 101729 31 chain 4376 chr10 133797422 + 23868090 23868138 5S 121 + 0 48 89022 48 chain 46829 chr10 133797422 + 23875548 23876106 L1PA6 6164 + 5605 6162 30719 184 1 0 373 chain 10084 chr10 133797422 + 23880157 23880314 L1MA2 4263 + 3965 4114 70228 81 0 2 8 18 9 40 1 0 9 chain 193538 chr10 133797422 + 23892943 23896152 L1PA3long 6157 + 2984 6157 9950 690 36 0 1703 2 1 171 0 1 607 chain 35715 chr10 133797422 + 23908689 23909341 L1PB1 5432 + 4755 5420 37592 37 0 1 72 0 16 46 5 0 68 13 44 60 15 17 22 1 0 8 1 0 12 18 12 38 17 16 12 1 0 44 1 0 10 20 7 30 2 0 5 1 0 14 2 0 22 2 0 5 0 1 17 1 0 13 1 0 16 chain 18003 chr10 133797422 + 23910048 23910310 L1PA7 6471 + 6209 6470 58649 104 1 0 7 2 4 89 7 15 6 9 0 32 1 0 4 chain 76563 chr10 133797422 + 23933514 23934491 L1PA8A 6298 + 5300 6291 22422 47 0 1 4 0 1 136 5 9 369 13 14 228 0 6 30 1 2 144 chain 30114 chr10 133797422 + 23946835 23947214 THE1C 375 + 0 375 41929 125 3 0 225 1 0 25 chain 7163 chr10 133797422 + 23970699 23970796 MER4D1 891 + 9 106 77063 74 0 1 4 1 0 18 chain 42711 chr10 133797422 + 23972178 23973046 L1PA8A 6298 + 5746 6270 32941 118 345 0 318 3 4 84 chain 37720 chr10 133797422 + 23984444 23984924 L1PA8 5853 + 5375 5850 36260 189 1 0 37 0 1 6 2 0 70 2 1 61 2 1 19 1 0 90 chain 27438 chr10 133797422 + 24000194 24000568 THE1C 375 + 1 375 45656 68 13 14 25 1 0 267 chain 5330 chr10 133797422 + 24103978 24104034 THE1C 375 + 8 64 84054 56 chain 3279 chr10 133797422 + 24123669 24123739 MER5B 177 + 70 145 97194 27 17 23 8 1 0 17 chain 5447 chr10 133797422 + 24141936 24142006 MLT1A0 366 + 296 366 83477 70 chain 3059 chr10 133797422 + 24228356 24228411 MADE1 96 - 0 96 99225 12 0 41 43 chain 13565 chr10 133797422 + 24234098 24234342 Tigger4a 237 + 0 237 64229 34 11 13 99 9 7 18 24 17 49 chain 38076 chr10 133797422 + 24266460 24267006 LTR12F 595 + 0 595 36014 97 2 5 44 2 0 31 5 47 78 5 7 105 0 1 34 8 9 8 1 0 54 3 0 63 0 6 6 chain 79562 chr10 133797422 + 24268363 24269222 L1PA2 6032 + 5173 6032 21731 859 chain 25458 chr10 133797422 + 24277458 24277797 THE1C 375 + 0 336 48544 180 0 4 6 15 8 138 chain 214288 chr10 133797422 + 24387084 24389561 L1PA5 6144 + 3661 6144 9196 270 0 1 293 0 1 8 4 3 658 4 0 404 12 16 106 1 2 252 0 4 465 chain 192349 chr10 133797422 + 24654001 24658817 L1PA5 6144 + 3854 6130 10004 29 0 2 458 0 8 1029 2553 0 24 1 0 280 5 1 177 0 1 254 0 7 6 chain 135247 chr10 133797422 + 24655577 24658070 SVA_F 1814 + 335 1814 13515 459 40 0 97 677 0 56 0 15 39 3 0 10 1 0 166 308 0 637 chain 3416 chr10 133797422 + 24656180 24656219 SVA_F 1814 + 962 1001 43329 39 chain 20914 chr10 133797422 + 24656219 24656759 SVA_F 1814 + 888 1187 39735 36 78 0 23 2 16 54 177 0 170 chain 6833 chr10 133797422 + 24656255 24656333 SVA_F 1814 + 1037 1115 43329 78 chain 8672 chr10 133797422 + 24656412 24656511 SVA_F 1814 + 1193 1291 43329 81 1 0 17 chain 1984 chr10 133797422 + 24656511 24656549 SVA_F 1814 + 1165 1203 70578 38 chain 2918 chr10 133797422 + 24656759 24656850 SVA_F 1814 + 898 1004 51957 49 0 15 42 chain 15586 chr10 133797422 + 24657126 24657302 SVA_F 1814 + 1001 1177 51640 10 1 0 128 0 1 37 chain 3784 chr10 133797422 + 24657315 24657433 SVA_F 1814 + 1010 1128 51957 118 chain 3318 chr10 133797422 + 24760483 24760522 MLT2B1 522 + 483 522 96862 39 chain 10328 chr10 133797422 + 24814547 24814865 LTR64 526 + 252 518 69742 54 101 55 30 51 48 73 3 0 6 chain 66017 chr10 133797422 + 24832906 24833662 L1P1 4361 + 3042 3797 24950 173 1 0 582 chain 50374 chr10 133797422 + 24864034 24864705 Tigger1 2417 + 1679 2343 29420 427 3 0 104 3 0 35 7 6 92 chain 137887 chr10 133797422 + 24922677 24924447 L1P2 5180 + 2 1786 13275 136 19 18 20 1 2 12 11 10 44 18 17 52 11 7 10 4 5 180 1 0 47 2 1 142 0 1 81 0 15 71 1 2 22 0 4 885 chain 88959 chr10 133797422 + 24924447 24925479 L1PA6 6164 + 5130 6162 19832 184 0 5 85 3 0 224 0 1 375 1 0 7 2 0 151 chain 3661 chr10 133797422 + 25005904 25005963 MER3 215 + 40 109 93904 16 6 16 37 chain 116665 chr10 133797422 + 25009975 25012874 THE1B-int 1605 + 2 1594 16109 428 1340 21 7 0 1 108 0 4 103 0 1 69 5 14 148 53 54 60 1 0 279 3 0 295 chain 25030 chr10 133797422 + 25011453 25011734 L1PA3long 6157 + 4866 5147 49232 281 chain 7124 chr10 133797422 + 25019555 25019663 MER2 342 + 160 272 77179 31 10 14 67 chain 108004 chr10 133797422 + 25122368 25123826 MER41-int 2638 + 1161 2628 17327 68 14 16 78 1 0 32 1 6 133 4 6 114 1 2 65 0 1 156 5 0 7 0 5 26 10 8 27 2 0 119 1 3 29 0 1 163 0 2 316 2 0 84 chain 39896 chr10 133797422 + 25123856 25124380 MER41A 554 + 13 554 34741 77 0 2 154 3 13 78 9 9 124 0 5 79 chain 312358 chr10 133797422 + 25185857 25189797 L1PA5 6144 + 2612 6143 6569 78 0 3 920 409 0 1165 0 1 958 2 0 395 3 1 10 chain 26782 chr10 133797422 + 25358369 25358734 THE1B 368 + 0 368 46567 15 2 0 21 1 6 126 2 0 28 5 7 165 chain 133402 chr10 133797422 + 25371378 25372862 L1PA3long 6157 + 4668 6157 13701 728 1 0 741 0 6 14 chain 197223 chr10 133797422 + 25429587 25431748 L1PA3long 6157 + 3721 5886 9800 1589 0 4 572 chain 63309 chr10 133797422 + 25540244 25540945 L1PA5 6144 + 5435 6137 25561 158 0 1 543 chain 507056 chr10 133797422 + 25619185 25626089 L1PA7 6471 + 0 6465 2886 180 0 1 4 1 0 11 9 8 53 1 0 49 0 3 99 10 0 4 17 0 204 11 10 364 6 5 116 1 0 62 1 11 213 0 3 66 0 1 92 1 0 578 0 1 28 0 7 176 31 3 287 1 2 245 0 4 100 5 1 26 0 3 370 7 8 86 26 13 8 0 4 10 11 4 26 3 7 15 0 3 81 0 3 151 0 4 380 1 0 446 1 0 75 6 11 5 2 0 217 2 1 238 0 1 78 0 1 41 0 4 129 18 18 15 0 5 125 0 4 11 1 3 54 0 3 22 2 3 104 432 0 203 0 2 187 0 4 105 1 0 157 chain 32191 chr10 133797422 + 25625043 25625436 L1PA7 6471 + 5845 6239 40198 293 9 10 91 chain 51493 chr10 133797422 + 25640566 25641224 PABL_A 660 + 0 660 29047 576 11 13 71 chain 78851 chr10 133797422 + 25673246 25674296 MER11C 1089 + 0 1063 21908 242 4 13 62 0 4 21 1 0 186 79 76 84 0 4 7 1 0 38 0 1 325 chain 3521 chr10 133797422 + 25705427 25705468 MSTA 426 + 385 426 95094 41 chain 305490 chr10 133797422 + 25716834 25720703 HERVH-int 3825 + 0 3825 6709 42 2 1 214 0 17 59 2 1 135 0 5 5 1 0 6 2 0 34 3 4 9 1 0 26 23 22 7 0 1 16 28 0 14 1 0 13 12 9 16 1 0 42 1 2 79 1 0 59 2 5 380 15 0 207 9 0 25 0 2 13 1 0 59 1 0 157 6 0 93 0 1 1626 42 40 379 chain 29736 chr10 133797422 + 25722516 25722926 LTR7 482 + 0 482 42323 69 8 46 109 8 40 41 1 3 174 chain 23020 chr10 133797422 + 25724891 25725290 MER39B 650 + 241 634 52330 99 10 11 70 52 53 65 18 10 85 chain 97266 chr10 133797422 + 25755817 25757020 LTR12C 1709 + 0 1709 18624 208 6 8 248 4 5 181 0 485 81 29 12 352 0 33 63 0 2 31 chain 3895 chr10 133797422 + 25757584 25757628 MADE1 96 + 46 90 92170 44 chain 33877 chr10 133797422 + 25760726 25761146 MER75 514 + 45 468 38802 238 4 7 178 chain 24023 chr10 133797422 + 25805017 25805347 Tigger2a 444 + 0 322 50765 92 7 5 40 3 0 3 3 0 182 chain 2538 chr10 133797422 + 25840502 25840529 L1PA7 6471 + 5533 5560 103455 27 chain 73498 chr10 133797422 + 25840529 25841432 L1PA7 6471 + 5561 6465 23218 53 0 4 194 0 2 185 4 5 292 14 6 58 7 9 96 chain 9842 chr10 133797422 + 25841906 25842017 L1PA6 6164 + 6049 6160 70735 111 chain 5501 chr10 133797422 + 25845261 25845328 MER4C 627 + 560 627 83225 67 chain 15991 chr10 133797422 + 25905669 25905872 MER44A 345 + 132 334 61034 169 1 0 33 chain 64982 chr10 133797422 + 25983572 25984383 L1PBa 3878 + 988 1795 25194 157 5 0 50 0 1 249 2 4 173 2 0 173 chain 231889 chr10 133797422 + 25984707 25988351 L1PB1 5432 + 2120 5422 8694 100 0 1 127 3 0 13 309 0 18 3 1 115 13 1 4 0 1 30 5 36 46 0 1 4 8 7 203 6 5 196 12 0 140 0 1 556 16 13 37 1 0 186 7 8 102 0 1 556 0 3 215 31 36 220 1 2 12 3 0 21 1 0 6 1 0 14 5 1 9 2 0 9 11 1 42 2 1 16 1 0 44 1 0 15 1 0 4 62 46 24 1 0 22 7 6 6 1 0 18 chain 294097 chr10 133797422 + 26006128 26009393 L1PA3long 6157 + 2890 6157 7006 151 0 1 2241 0 6 534 1 2 249 6 0 83 chain 79197 chr10 133797422 + 26137284 26138340 MER11A 1151 + 0 1151 21796 55 0 99 141 4 0 31 0 2 60 0 1 54 0 1 50 1 0 4 7 8 23 0 3 8 0 7 21 0 1 110 0 1 155 41 24 112 0 1 179 chain 11305 chr10 133797422 + 26189066 26189190 L1PA4 6152 + 4461 4585 68076 124 chain 41792 chr10 133797422 + 26306263 26306786 MER41A 554 + 0 554 33496 385 0 21 34 0 4 24 0 5 65 0 1 15 chain 45650 chr10 133797422 + 26332115 26332705 PABL_A 660 + 0 650 31233 152 6 5 18 0 39 110 0 5 74 0 1 70 0 16 160 chain 78824 chr10 133797422 + 26348430 26349493 MER11A 1151 + 0 1146 21913 55 0 99 22 8 0 52 1 0 64 6 2 149 0 1 94 0 7 138 5 7 111 0 3 6 0 26 26 43 0 58 0 1 46 1 0 16 0 1 162 chain 75444 chr10 133797422 + 26366593 26367639 MER11A 1151 + 0 1146 22733 55 0 99 76 1 0 62 3 5 30 0 2 44 1 9 61 0 1 94 0 1 144 5 7 101 49 0 19 0 26 11 10 17 56 0 1 60 6 7 158 chain 3782 chr10 133797422 + 26372434 26372478 LTR41 747 + 0 44 92975 44 chain 4004 chr10 133797422 + 26382943 26382988 MLT1A0 366 + 321 366 91425 45 chain 59055 chr10 133797422 + 26396620 26397319 L1PA5 6144 + 5444 6143 26649 699 chain 41678 chr10 133797422 + 26402889 26403461 L1PA8 5853 + 5295 5853 33569 193 0 1 75 1 0 46 2 0 67 9 0 14 3 0 49 2 1 19 2 1 32 5 7 12 1 2 30 1 0 9 chain 48137 chr10 133797422 + 26403985 26404629 L1PA8 5853 + 5212 5853 30245 98 0 4 250 1 0 44 2 0 71 12 10 51 2 1 19 2 1 92 chain 38780 chr10 133797422 + 26423643 26424239 LTR10E 629 + 0 622 35509 14 0 1 121 4 0 22 19 16 96 1 27 27 1 0 8 1 2 4 1 0 18 4 5 15 1 0 161 1 0 11 31 39 35 chain 10429 chr10 133797422 + 26427417 26427548 Tigger2a 444 + 44 184 69557 49 0 9 82 chain 28671 chr10 133797422 + 26429171 26429524 MER1A 529 + 154 510 43844 305 9 12 39 chain 45420 chr10 133797422 + 26434487 26435163 MER50 708 + 0 686 31351 58 2 0 37 15 16 63 0 1 114 10 14 126 1 0 4 5 8 10 0 1 48 0 3 34 32 33 4 1 0 112 chain 4503 chr10 133797422 + 26468604 26468684 MADE1 96 - 0 96 88305 38 12 28 30 chain 27731 chr10 133797422 + 26479028 26479323 AluYa5 310 + 16 310 45277 116 1 0 178 chain 65216 chr10 133797422 + 26631789 26632519 L1PA5 6144 + 4780 5511 25130 367 0 1 363 chain 8728 chr10 133797422 + 26729762 26729889 MER85 139 + 0 139 73152 42 0 1 53 9 20 23 chain 5203 chr10 133797422 + 26841084 26841164 MER58A 224 + 122 204 84666 21 8 10 51 chain 28298 chr10 133797422 + 26891606 26891937 L1PA7 6471 + 6118 6449 44419 331 chain 76150 chr10 133797422 + 26893469 26894437 LTR5_Hs 974 + 0 974 22526 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 67287 chr10 133797422 + 26901765 26903054 L1PA8 5853 + 4887 5853 24624 118 5 4 71 9 7 67 1 6 18 3 0 6 0 1 174 6 9 53 4 5 52 320 0 86 1 0 43 3 1 70 20 18 41 7 6 17 1 0 93 chain 21762 chr10 133797422 + 26906074 26906552 LTR12C 1709 + 875 1203 54156 188 156 0 8 0 47 41 41 0 44 chain 1966 chr10 133797422 + 26906356 26906403 LTR12C 1709 + 837 886 94813 20 2 4 25 chain 3966 chr10 133797422 + 26926483 26926532 MSTB2 466 + 185 234 91657 49 chain 127069 chr10 133797422 + 26965055 26966592 L1PA8A 6298 + 4754 6291 14413 71 1 0 449 0 1 214 2 1 90 2 1 82 0 1 274 0 1 352 chain 143394 chr10 133797422 + 26985853 26987427 L1PA4 6152 + 4564 6138 12826 1574 chain 23780 chr10 133797422 + 26997606 26998017 LTR14A 344 + 0 344 51142 45 3 0 3 44 0 5 0 3 56 38 7 142 3 11 72 chain 7729 chr10 133797422 + 27028172 27028305 Tigger4b 360 + 26 175 75536 14 22 40 87 2 0 8 chain 5576 chr10 133797422 + 27132460 27132519 MER41B 635 + 479 538 82907 59 chain 25139 chr10 133797422 + 27189490 27189770 L1PA5 6144 + 5852 6138 49061 138 0 6 142 chain 32699 chr10 133797422 + 27200039 27200418 MER41A 554 + 0 394 39766 85 0 3 263 0 12 31 chain 49465 chr10 133797422 + 27213120 27214361 L1MA3 4352 + 3337 4328 29781 44 1 0 14 7 8 40 0 3 161 389 79 21 0 1 220 1 4 124 137 195 7 2 0 24 1 0 4 3 2 29 1 0 11 chain 10634 chr10 133797422 + 27226966 27227132 MER30 238 + 67 238 69161 31 10 0 25 10 25 90 chain 6744 chr10 133797422 + 27257167 27257391 LTR12C 1709 + 650 877 78500 27 112 114 46 1 0 23 1 3 14 chain 545600 chr10 133797422 + 27299253 27305370 L1PA4 6152 + 6 6146 991 569 0 4 2252 0 1 356 0 4 58 0 3 306 4 3 1045 0 1 545 0 5 143 0 2 793 7 11 39 chain 16129 chr10 133797422 + 27371428 27371787 THE1B 368 + 0 368 60855 78 59 64 35 61 66 63 7 6 56 chain 537668 chr10 133797422 + 27418271 27424386 L1PA4 6152 + 10 6152 1474 1202 0 1 203 0 5 1363 1 3 463 0 3 915 0 1 437 0 1 427 1 0 198 3 1 476 0 1 292 0 6 30 0 1 92 0 9 12 chain 106179 chr10 133797422 + 27430945 27432141 L1P1 4361 + 2567 3771 17547 118 1 0 830 0 9 247 chain 29293 chr10 133797422 + 27465309 27465760 LTR7 482 + 0 482 42904 86 51 0 15 15 14 17 0 51 47 0 31 44 0 1 176 chain 33081 chr10 133797422 + 27465762 27466213 HERVH-int 3825 + 0 446 39453 33 1 0 91 2 0 203 6 5 64 20 17 5 0 2 26 chain 36039 chr10 133797422 + 27470486 27470937 LTR7 482 + 0 482 37395 101 15 14 115 0 31 44 0 1 176 chain 529916 chr10 133797422 + 27587033 27593439 L1PA7 6471 + 6 6465 1828 57 0 4 344 0 2 11 6 7 621 6 12 155 0 3 339 1 0 136 0 3 59 0 2 866 0 6 61 0 1 171 1 0 73 0 3 81 5 4 239 1 3 260 1 0 25 1 5 12 0 3 42 0 1 219 6 3 16 1 13 137 1 0 309 4 0 360 0 4 936 0 4 80 0 2 273 0 3 322 1 0 4 0 1 154 1 0 8 chain 26347 chr10 133797422 + 27612881 27613232 THE1B 368 + 0 364 47205 44 0 15 114 1 0 133 7 6 52 chain 9008 chr10 133797422 + 27635091 27635207 MST-int 1221 + 1006 1120 72542 66 2 0 48 chain 82870 chr10 133797422 + 27667080 27668006 L1PA4 6152 + 5231 6152 21049 460 0 2 278 7 0 181 chain 15312 chr10 133797422 + 27679097 27679283 L1PA6 6164 + 5981 6162 61895 174 5 0 7 chain 46454 chr10 133797422 + 27681045 27682549 Tigger3b 1229 + 54 955 30863 4 0 1 52 29 38 33 774 156 59 3 0 6 0 3 162 0 4 8 1 3 6 9 0 19 0 1 7 0 4 62 0 2 9 6 11 61 0 1 8 3 2 92 4 0 87 chain 23476 chr10 133797422 + 27752077 27752435 THE1B 368 + 0 353 51622 129 11 2 38 1 0 25 9 15 4 0 1 10 21 19 110 chain 17196 chr10 133797422 + 27768983 27769303 THE1B 368 + 0 368 59574 15 2 0 93 45 85 7 1 0 13 1 5 10 6 14 64 7 6 56 chain 397133 chr10 133797422 + 27845022 27849555 L1PA5 6144 + 1587 6138 5193 115 7 0 651 1 0 1106 4 5 578 1 3 190 1 2 762 0 13 281 0 8 695 0 1 141 chain 78652 chr10 133797422 + 27875569 27876507 L1P1 4361 + 4 942 21949 938 chain 336802 chr10 133797422 + 27899015 27903136 L1P3 4156 + 3 4139 6120 223 9 6 19 11 10 59 8 7 75 1 0 209 0 1 778 0 3 45 0 3 116 1 0 481 0 1 482 0 1 107 0 2 175 0 1 63 0 1 12 0 4 457 0 9 645 2 1 101 18 15 24 chain 71828 chr10 133797422 + 27905282 27906094 L1PA7 6471 + 4725 5538 23585 757 0 1 55 chain 6989 chr10 133797422 + 27906094 27906175 L1PA7 6471 + 5539 5620 77642 81 chain 72602 chr10 133797422 + 27906175 27907023 L1PA7 6471 + 5624 6468 23401 390 2 0 445 2 0 9 chain 41930 chr10 133797422 + 27913502 27914155 L1PA15 4387 + 3688 4327 33409 44 2 1 77 0 2 16 4 0 62 2 0 43 1 0 171 1 0 23 5 6 52 1 0 22 4 0 6 20 19 35 6 3 19 0 3 21 2 0 14 chain 22450 chr10 133797422 + 27933934 27934271 THE1B 368 + 12 367 53200 21 7 22 117 3 4 22 12 11 4 0 1 53 0 1 39 6 7 53 chain 8858 chr10 133797422 + 28030836 28031075 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28655113 28655650 SVA_C 1631 + 1045 1611 30890 13 1 38 386 8 0 129 chain 3200 chr10 133797422 + 28658265 28658317 MER5A 189 + 4 57 97890 20 6 7 26 chain 8960 chr10 133797422 + 28667918 28668025 U6 107 + 0 107 72651 107 chain 19493 chr10 133797422 + 28727383 28727685 THE1D 372 + 18 332 57042 34 23 33 11 0 2 5 2 0 79 9 11 139 chain 32198 chr10 133797422 + 28739302 28739732 MER57A1 433 + 2 433 40189 237 5 6 31 0 1 4 1 0 152 chain 128213 chr10 133797422 + 28771159 28772674 SVA_B 1603 + 13 1599 14252 6 0 1 14 10 7 170 0 1 414 8 0 216 14 97 8 0 1 15 4 0 13 1 0 14 1 0 173 0 4 80 0 1 343 3 0 8 chain 3334 chr10 133797422 + 28781497 28781536 MADE1 96 + 2 42 96733 28 0 1 11 chain 22771 chr10 133797422 + 28819415 28819695 AluSc 308 + 10 295 52718 37 0 6 204 2 1 37 chain 11120 chr10 133797422 + 28880937 28881144 MER30 238 + 0 225 68375 16 34 33 41 11 33 76 5 2 24 chain 35077 chr10 133797422 + 28934471 28934874 SVA_D 2077 + 281 2077 37970 218 0 1393 185 chain 2980 chr10 133797422 + 29062684 29062717 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5 1 0 2 chain 58605 chr10 133797422 + 29755400 29756170 MER4E1 777 + 0 777 26786 18 1 2 59 0 1 238 4 5 96 2 1 125 1 5 35 14 15 177 chain 22486 chr10 133797422 + 29802197 29802551 THE1A 353 + 0 353 53138 47 62 59 4 1 0 77 0 3 163 chain 24060 chr10 133797422 + 29837106 29837469 THE1B 368 + 0 368 50710 172 1 0 12 54 59 49 0 1 75 chain 5430 chr10 133797422 + 29922384 29922448 MER1A 529 + 465 529 83556 64 chain 15574 chr10 133797422 + 29963057 29963405 THE1D 372 + 0 344 61562 15 0 2 15 1 0 24 38 30 25 33 35 20 44 45 133 chain 7832 chr10 133797422 + 29969830 29969923 MER85 139 + 0 93 75291 93 chain 19276 chr10 133797422 + 29971011 29971248 L1PA7 6471 + 6228 6466 57267 201 4 5 32 chain 39714 chr10 133797422 + 30099712 30100246 LTR10F 562 + 0 562 34883 50 2 0 83 9 37 60 2 26 10 21 0 169 1 0 127 chain 5255 chr10 133797422 + 30112521 30112589 L1MB5 1630 + 1352 1419 84417 38 1 0 29 chain 22573 chr10 133797422 + 30122797 30123068 AluY 311 + 37 307 53012 83 6 7 36 2 0 144 chain 114210 chr10 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30294335 MER57A1 433 + 10 433 42648 128 14 25 9 1 2 102 7 9 148 chain 34915 chr10 133797422 + 30476114 30476564 LTR2 463 + 0 463 38082 136 0 12 214 12 13 88 chain 345697 chr10 133797422 + 30477677 30481853 Harlequin-int 5206 + 143 4271 5973 155 6 0 78 1 0 108 8 0 63 0 2 462 1 0 169 0 1 107 3 1 274 1 2 696 2 1 232 7 0 173 8 0 86 1 0 247 0 1 302 3 1 50 13 5 117 13 4 208 1 2 581 chain 37271 chr10 133797422 + 30481961 30482420 LTR2 463 + 0 463 36571 11 0 3 348 12 13 88 chain 5716 chr10 133797422 + 30482539 30482604 LTR2 463 + 398 463 82271 65 chain 15816 chr10 133797422 + 30499076 30499310 L1PB2 3958 + 3609 3838 61264 8 1 0 64 1 0 72 2 0 7 16 15 63 chain 67830 chr10 133797422 + 30522136 30523200 MER11B 1079 + 0 1063 24488 199 0 2 157 0 5 94 15 14 25 107 99 99 5 12 12 1 0 18 50 42 15 1 0 5 0 3 16 10 11 235 chain 16676 chr10 133797422 + 30590043 30590362 L1PA11 4918 + 4243 4552 60181 88 4 13 45 21 18 68 3 1 12 1 0 20 4 0 9 8 3 10 13 9 13 chain 5156 chr10 133797422 + 30610355 30610413 L1PA8 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5617 11764 1733 chain 22333 chr10 133797422 + 31411083 31411363 L1PA7 6471 + 3023 3307 53358 77 5 9 198 chain 27249 chr10 133797422 + 31411363 31411656 AluYb8 318 + 14 306 45896 118 1 0 174 chain 5004 chr10 133797422 + 31411670 31411747 L1P3 4156 + 3315 3378 85642 20 14 0 43 chain 199191 chr10 133797422 + 31440291 31442575 L1PA5 6144 + 3866 6143 9742 434 7 8 989 0 4 54 4 0 771 1 0 9 7 0 8 chain 225331 chr10 133797422 + 31453629 31456408 L1PA7 6471 + 3677 6467 8879 5 0 3 142 1 2 7 3 0 443 8 6 177 12 5 198 0 8 144 0 1 41 2 0 511 7 8 236 0 3 30 0 1 210 0 1 451 1 0 20 1 2 43 1 2 34 0 4 16 1 2 34 chain 543394 chr10 133797422 + 31469210 31475215 L1PA3long 6157 + 10 6152 1115 142 0 1 623 0 128 1486 0 3 866 0 4 2745 0 1 143 chain 3324 chr10 133797422 + 31516921 31516983 MER5C1 258 + 57 100 96825 8 19 0 35 chain 5106 chr10 133797422 + 31651357 31651432 MADE1 96 + 0 91 85132 28 4 20 43 chain 28277 chr10 133797422 + 31691800 31692188 MSTA-int 1630 + 1227 1622 44446 116 0 1 112 8 9 50 1 0 16 7 13 78 chain 54107 chr10 133797422 + 31733645 31734368 MER4A 717 + 7 717 28189 111 27 6 169 0 7 98 0 1 83 0 1 224 1 0 10 chain 3265 chr10 133797422 + 31756865 31756912 MIRb 242 + 77 124 97330 33 1 0 4 0 1 9 chain 51888 chr10 133797422 + 31764002 31764618 L1PA8 5853 + 5233 5852 28914 331 1 0 44 2 0 59 16 23 70 1 0 92 chain 19293 chr10 133797422 + 31776171 31776494 THE1B 368 + 0 349 57248 40 0 15 119 1 0 24 13 14 23 42 53 61 chain 370815 chr10 133797422 + 31892060 31896243 L1PA5 6144 + 1929 6138 5634 377 1 0 12 0 9 363 5 8 477 0 5 502 1 0 1611 0 8 225 0 3 609 chain 25928 chr10 133797422 + 31963944 31964430 L1M1 2793 + 663 1141 47822 26 77 77 6 2 0 33 1 0 26 2 0 8 1 0 54 21 18 78 0 2 12 1 0 138 chain 173936 chr10 133797422 + 31969116 31971613 SVA_E 1901 + 5 1884 10897 148 1 0 664 613 0 110 3 0 31 2 1 925 chain 31959 chr10 133797422 + 31969930 31970505 SVA_E 1901 + 817 1255 33492 26 1 0 29 112 0 55 4 0 87 0 1 80 1 0 83 0 1 4 59 37 6 0 1 28 chain 3081 chr10 133797422 + 31969988 31970049 SVA_E 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32354743 32355164 MER1A 529 + 97 529 51189 48 13 30 19 28 29 68 3 0 152 51 47 39 chain 37342 chr10 133797422 + 32361732 32362245 MER41A 554 + 0 554 36521 195 0 1 31 0 13 78 10 28 100 7 11 11 8 13 73 chain 2921 chr10 133797422 + 32517100 32517135 MER58A 224 + 49 84 100665 35 chain 547009 chr10 133797422 + 32558685 32564801 L1PA3long 6157 + 6 6146 917 261 0 1 258 4 0 339 14 16 983 0 1 381 0 1 15 0 2 55 2 0 53 0 1 19 0 4 194 0 16 1354 0 2 114 0 1 154 8 4 122 0 4 1686 1 0 99 chain 70506 chr10 133797422 + 32601535 32602407 LTR12 884 + 0 869 23865 25 1 0 65 25 0 29 0 25 192 1 2 40 2 0 290 1 0 201 chain 67307 chr10 133797422 + 32660689 32661414 L1PA3long 6157 + 4860 5589 24619 450 0 4 275 chain 119490 chr10 133797422 + 32675677 32677014 L1PA3long 6157 + 4438 5792 15609 512 0 13 25 0 1 10 0 1 128 0 1 597 0 1 65 chain 495287 chr10 133797422 + 32697211 32709480 L1PA5 6144 + 3 6144 3285 132 29 45 37 0 1 39 0 1 556 13 8 121 0 4 7 25 0 14 0 1 201 9 0 65 1 0 581 6114 0 3168 1 2 276 1 2 411 8 7 37 0 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8 23 96 chain 80670 chr10 133797422 + 33689847 33690908 MER11A 1151 + 0 1151 21497 63 1 100 122 18 14 139 5 6 87 0 7 267 2 1 56 3 0 105 1 2 86 9 0 30 7 6 60 chain 5395 chr10 133797422 + 33720199 33720263 MER51A 677 + 196 260 83724 64 chain 4370 chr10 133797422 + 33741329 33741381 L1MA8 2339 + 1872 1924 89051 52 chain 13734 chr10 133797422 + 33762172 33762353 MER30 238 + 46 238 63968 50 0 2 11 4 13 116 chain 48381 chr10 133797422 + 33827061 33830466 L1PA8 5853 + 5210 5853 30158 142 2757 0 212 1 0 44 2 0 71 1 0 14 4 3 64 1 0 75 2 3 15 chain 32594 chr10 133797422 + 33827238 33827700 L1PA8 5853 + 5389 5847 39869 5 3 1 169 1 0 32 1 0 14 2 0 65 14 16 7 0 2 42 1 0 18 1 0 87 chain 47797 chr10 133797422 + 33931991 33932544 MER41A 554 + 0 554 30364 466 0 1 87 chain 24811 chr10 133797422 + 33933315 33933639 L1PB1 5432 + 4779 5103 49574 26 12 12 286 chain 5939 chr10 133797422 + 33969143 33969389 MLT1J 494 + 232 491 81319 52 8 0 8 136 158 5 1 0 36 chain 111110 chr10 133797422 + 34005146 34006557 L1PA7 6471 + 5122 6459 16925 320 0 1 178 1 0 485 54 0 8 0 8 17 16 5 75 17 0 240 chain 9320 chr10 133797422 + 34035857 34035972 LTR12C 1709 + 773 928 55862 60 0 40 55 chain 28489 chr10 133797422 + 34035972 34036309 LTR12C 1709 + 650 986 44143 187 1 0 149 chain 105391 chr10 133797422 + 34055371 34056657 LTR12C 1709 + 0 1709 17628 338 0 43 83 2 0 5 1 0 181 0 278 184 1 0 111 1 5 169 0 102 210 chain 16234 chr10 133797422 + 34058537 34058760 MER30 238 + 0 238 60709 100 1 0 6 4 23 63 3 0 46 chain 55007 chr10 133797422 + 34063058 34063694 L1PA7 6471 + 5832 6470 27874 624 0 2 12 chain 470343 chr10 133797422 + 34067492 34073605 L1PA7 6471 + 5 6468 3845 126 18 24 13 109 108 45 51 248 152 5 15 14 6 8 7 2 0 28 1 76 177 0 21 1063 0 3 381 0 1 105 12 13 187 0 1 419 6 7 237 1 2 5 1 0 6 1 0 79 0 1 160 1 2 97 1 0 83 1 2 743 0 4 236 4 27 145 1 0 29 0 1 155 0 1 111 0 1 225 0 4 17 6 5 106 0 4 58 1 0 337 0 1 176 5 6 19 0 1 128 4 0 7 chain 41812 chr10 133797422 + 34226960 34228089 L1PA15 4387 + 3609 4326 33477 23 1 2 51 0 5 123 9 12 8 4 0 57 2 0 27 4 0 16 1 0 28 4 10 33 312 0 84 1 0 16 1 0 18 4 8 31 94 0 24 1 0 22 4 0 6 6 5 23 33 29 44 3 1 11 chain 66292 chr10 133797422 + 34268202 34268937 L1PA5 6144 + 5407 6143 24877 277 0 1 458 chain 6568 chr10 133797422 + 34333660 34333802 MER58A 224 + 60 219 79088 50 47 64 45 chain 118208 chr10 133797422 + 34352357 34353709 SVA_B 1603 + 0 1580 15849 9 0 33 591 0 40 170 0 40 43 0 78 21 4 41 514 chain 7519 chr10 133797422 + 34369359 34369443 MER30 238 + 147 231 76081 84 chain 65938 chr10 133797422 + 34426792 34427856 MER11B 1079 + 0 1079 24972 358 0 5 72 0 11 11 18 17 22 31 19 8 0 1 12 7 8 32 18 19 99 5 12 12 1 0 16 99 94 51 0 1 78 0 8 85 1 0 28 chain 3935 chr10 133797422 + 34533222 34533275 L1PA16 3655 + 3537 3587 91867 42 3 0 8 chain 33778 chr10 133797422 + 34662155 34662590 L1MA3 4352 + 3479 3915 38865 198 1 2 236 chain 30476 chr10 133797422 + 34669006 34669417 L1PB4 2604 + 2134 2550 41601 229 1 0 17 5 3 46 0 2 54 1 7 58 chain 27934 chr10 133797422 + 34680696 34680997 L1PA2 6032 + 5731 6032 44978 301 chain 88404 chr10 133797422 + 34691120 34692591 L1PA15 4387 + 2698 3855 19964 438 2 0 32 20 23 190 4 0 133 309 0 298 2 0 43 chain 2729 chr10 133797422 + 34898197 34898226 L1MEa 740 + 454 483 102128 29 chain 23014 chr10 133797422 + 34921905 34922184 AluSp 311 + 12 295 52337 52 0 2 214 0 2 13 chain 4003 chr10 133797422 + 34948095 34948141 MLT1C 463 + 59 105 91432 46 chain 46561 chr10 133797422 + 34951300 34952309 MER41B 635 + 0 635 30821 69 9 5 44 0 3 6 1 2 29 0 1 119 1 0 170 392 18 169 chain 337943 chr10 133797422 + 34970323 34974359 HERVE-int 4064 + 0 4064 6108 159 0 6 540 1 3 102 0 1 114 22 7 601 26 1 819 0 4 13 5 7 135 2 0 37 0 48 15 1 3 35 1 2 56 0 3 696 2 0 38 0 3 616 chain 11593 chr10 133797422 + 34975461 34975620 LTR2C 499 + 339 499 67583 88 8 9 63 chain 119773 chr10 133797422 + 34975928 34977301 SVA_C 1631 + 0 1631 15570 22 0 19 7 13 0 795 0 256 515 4 0 17 chain 2892 chr10 133797422 + 35021693 35021723 AluJb 308 - 122 152 100913 30 chain 4386 chr10 133797422 + 35106638 35106687 MLT1A0 366 + 304 353 88968 49 chain 3670 chr10 133797422 + 35135442 35135488 U7 62 + 0 48 93817 16 0 2 30 chain 25337 chr10 133797422 + 35227753 35228037 AluYc 301 + 0 286 48734 120 0 2 164 chain 24558 chr10 133797422 + 35233887 35234170 AluYk4 311 + 0 282 49929 132 1 0 150 chain 127965 chr10 133797422 + 35295909 35298146 L1PREC2 3366 + 953 2867 14282 53 3 4 42 2 1 22 0 2 13 6 0 30 0 4 121 62 65 28 0 1 7 311 4 65 0 1 4 0 23 241 0 1 6 0 1 62 0 1 16 0 1 133 56 0 63 8 10 19 0 1 172 0 11 149 25 29 233 1 0 131 20 18 11 2 0 53 1 0 45 1 0 4 3 0 13 chain 29330 chr10 133797422 + 35430056 35430361 AluYa5 310 + 1 306 42835 305 chain 538477 chr10 133797422 + 35473784 35479768 L1PA3long 6157 + 0 6157 1427 152 0 1 211 0 1 66 1 0 337 8 136 497 0 9 980 0 4 165 0 1 137 1 0 494 1 0 2015 0 28 71 0 6 704 2 0 142 chain 2811 chr10 133797422 + 35521319 35521385 LTR42 492 + 4 73 101599 17 4 5 15 10 12 20 chain 112501 chr10 133797422 + 35536384 35537913 THE1A-int 1579 + 0 1579 16751 494 0 1 43 6 17 81 47 50 174 0 10 71 1 0 267 13 26 178 1 0 4 0 1 80 12 25 40 1 0 4 0 1 12 chain 83973 chr10 133797422 + 35679040 35680300 L1PA3long 6157 + 5218 6157 20812 267 318 0 663 3 0 9 chain 39810 chr10 133797422 + 35700413 35701050 LTR9B 643 + 5 643 34816 180 0 1 12 53 52 35 1 0 140 11 12 55 11 15 8 4 0 71 13 14 43 chain 29190 chr10 133797422 + 35812272 35812648 THE1C 375 + 0 375 43065 179 0 2 6 2 0 162 1 0 26 chain 151325 chr10 133797422 + 35815918 35817618 L1PA5 6144 + 4430 6132 12265 433 0 2 309 1 0 638 1 2 318 chain 544421 chr10 133797422 + 35858670 35864692 L1PA3long 6157 + 0 6157 1060 152 0 1 628 0 128 258 1 4 1198 0 1 851 0 2 2934 chain 55044 chr10 133797422 + 35866169 35866800 L1PA5 6144 + 5513 6144 27860 631 chain 25402 chr10 133797422 + 35873535 35873898 THE1B 368 + 0 368 48621 77 5 6 86 1 0 29 0 3 13 7 11 5 1 0 9 2 1 128 chain 33767 chr10 133797422 + 35878676 35879308 L1PB1 5432 + 4853 5427 38874 153 1 2 95 39 11 20 2 1 11 1 0 10 23 18 46 3 2 9 6 5 45 1 0 12 29 18 16 2 0 5 1 0 14 2 0 24 1 0 22 1 0 5 8 7 18 2 0 5 chain 59538 chr10 133797422 + 35966154 35966825 L1PA4 6152 + 5472 6143 26499 671 chain 5625 chr10 133797422 + 35966949 35967026 L1MCa 1829 + 1607 1679 82684 16 2 0 14 3 0 42 chain 26865 chr10 133797422 + 36005272 36005790 L1PB1 5432 + 4959 5424 46452 144 1 2 9 21 0 24 26 20 9 2 0 52 1 0 12 6 5 44 2 1 15 3 0 15 10 0 16 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 22888 chr10 133797422 + 36103180 36103439 L1PA3long 6157 + 5898 6157 52525 259 chain 4674 chr10 133797422 + 36116251 36116312 MER53 195 + 5 66 87413 61 chain 14911 chr10 133797422 + 36119057 36119256 MER2 342 + 82 277 62374 36 4 0 159 chain 234436 chr10 133797422 + 36161183 36163867 L1PA4 6152 + 3468 6141 8620 840 13 1 458 12 10 512 5 8 4 0 1 389 3 1 125 0 1 323 chain 121953 chr10 133797422 + 36195856 36197800 L1PA7 6471 + 4973 6457 15196 197 4 0 127 4 0 293 464 10 21 1 0 80 1 2 4 1 0 627 0 1 9 5 7 106 chain 35706 chr10 133797422 + 36196481 36196937 LTR2 463 + 0 463 37598 61 0 3 65 8 11 191 0 1 131 chain 102344 chr10 133797422 + 36241658 36243070 L1PA13 3608 + 1837 3226 18027 59 10 11 306 38 30 164 29 15 710 1 0 28 1 0 66 chain 24161 chr10 133797422 + 36260047 36260480 L1PA15 4387 + 3958 4366 50559 94 2 0 52 1 0 21 18 17 38 9 8 20 4 0 9 1 0 48 8 5 41 29 18 26 1 0 11 chain 12318 chr10 133797422 + 36274672 36274856 L1P3b 214 + 0 175 66267 26 10 5 126 9 5 13 chain 147514 chr10 133797422 + 36275036 36276860 L1PA8A 6298 + 4456 6291 12514 64 1 2 303 7 5 53 1 2 64 0 1 4 1 0 377 0 1 157 8 11 70 0 2 5 1 0 284 0 1 14 0 6 119 1 0 290 chain 27807 chr10 133797422 + 36396202 36396492 AluYd8 298 + 0 290 45172 290 chain 460084 chr10 133797422 + 36400404 36405575 L1PA3long 6157 + 396 6145 4123 686 0 571 208 5 4 26 20 26 792 0 5 174 0 1 940 0 1 527 0 4 344 5 4 850 9 1 585 chain 11318 chr10 133797422 + 36408442 36408613 Tigger3c 601 + 332 513 68057 20 0 10 41 1 6 28 8 3 73 chain 3261 chr10 133797422 + 36427574 36427612 MER20B 722 + 327 365 97373 38 chain 43193 chr10 133797422 + 36457233 36457745 MER9a3 513 + 0 513 32654 13 0 1 242 5 4 207 0 1 45 chain 28025 chr10 133797422 + 36463550 36464014 MER1A 529 + 16 524 44824 9 0 40 15 56 55 308 32 37 44 chain 229139 chr10 133797422 + 36473582 36476361 HERVL-int 5654 + 369 3138 8773 237 0 1 127 0 2 280 0 1 4 2 1 901 18 2 642 0 1 22 0 1 156 1 2 389 chain 110478 chr10 133797422 + 36662910 36665186 L1PB1 5432 + 3745 5427 17010 50 6 7 99 0 24 108 1 0 50 4 5 339 0 28 29 7 4 17 1 17 106 3 0 169 3 2 178 648 25 101 19 17 18 1 0 13 12 8 9 2 0 52 2 1 15 1 0 45 6 5 10 1 0 4 21 11 16 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 2 1 17 2 0 5 chain 8752 chr10 133797422 + 36688171 36688275 L1PA8 5853 + 5744 5847 73099 16 1 0 87 chain 12030 chr10 133797422 + 36820409 36820733 LTR12C 1709 + 776 1037 66797 28 153 33 72 3 18 4 0 1 37 0 41 27 chain 5970 chr10 133797422 + 36820451 36820519 LTR12C 1709 + 1018 1086 81190 68 chain 10674 chr10 133797422 + 36905892 36906127 Tigger3a 397 + 60 353 69093 14 16 65 20 1 11 108 52 51 24 chain 47702 chr10 133797422 + 36911786 36912319 L1PA2 6032 + 5493 6028 30399 107 0 2 426 chain 2781 chr10 133797422 + 36949110 36949146 MER20 218 + 22 57 101757 12 1 0 23 chain 43547 chr10 133797422 + 36963526 36964048 L1PA8 5853 + 5336 5853 32416 58 0 2 168 1 0 46 2 0 69 1 0 9 1 0 52 2 1 19 1 0 93 chain 7248 chr10 133797422 + 37062455 37062543 LTR12E 1234 + 162 250 76819 88 chain 129865 chr10 133797422 + 37066117 37067527 L1PA2 6032 + 4616 6029 14057 1128 0 3 282 chain 73076 chr10 133797422 + 37075945 37077056 LTR12C 1709 + 0 1534 23306 64 40 161 52 4 0 7 5 9 45 19 62 61 0 3 6 4 3 177 0 278 181 12 9 97 47 16 162 0 9 43 0 1 37 1 0 27 0 4 20 chain 22312 chr10 133797422 + 37084299 37084570 AluY 311 + 0 288 53394 22 0 18 83 2 0 9 0 1 155 chain 154290 chr10 133797422 + 37085342 37087036 L1PA2 6032 + 4341 6032 12096 675 3 0 1016 chain 126629 chr10 133797422 + 37092489 37094066 THE1A-int 1579 + 0 1574 14461 658 5 13 598 4 0 213 8 0 75 0 1 16 chain 55625 chr10 133797422 + 37100033 37100766 L1PB1 5432 + 4171 4920 27685 33 0 2 132 0 5 85 0 1 6 1 0 174 0 4 14 3 0 55 0 6 13 6 8 211 chain 171168 chr10 133797422 + 37137243 37139190 L1P1 4361 + 2 1944 11040 61 3 0 521 0 3 53 7 0 482 0 1 578 0 1 242 chain 287086 chr10 133797422 + 37202227 37205611 L1PA5 6144 + 2720 6142 7226 716 0 3 825 2 0 363 0 1 176 0 20 335 3 0 41 0 17 49 0 1 4 4 8 21 0 1 834 4 0 7 chain 3718 chr10 133797422 + 37253250 37253293 MER3 215 - 0 43 93478 43 chain 25820 chr10 133797422 + 37257760 37258131 L1PA8 5853 + 5489 5853 47990 75 1 0 44 2 0 68 23 20 4 0 1 39 2 1 19 2 1 92 chain 43740 chr10 133797422 + 37326740 37327251 MER9a3 513 + 0 513 32294 485 0 2 26 chain 184737 chr10 133797422 + 37407145 37409315 L1PA6 6164 + 3973 6156 10353 273 5 5 815 3 1 121 0 9 115 0 4 697 1 2 52 0 1 88 chain 70913 chr10 133797422 + 37493324 37494293 LTR5_Hs 974 + 0 960 23773 232 13 14 213 0 4 144 24 0 51 1 2 9 1 2 21 6 13 61 0 1 193 chain 482225 chr10 133797422 + 37537981 37543464 L1PA4 6152 + 0 5520 3584 511 0 1 57 0 4 571 6 30 291 0 1 122 1 2 1764 2 0 155 1 0 134 0 8 522 0 1 1346 chain 39928 chr10 133797422 + 37550221 37550760 MER41A 554 + 0 539 34717 430 0 1 45 31 30 33 chain 55941 chr10 133797422 + 37565905 37566926 MER11C 1089 + 2 1073 27578 257 0 3 99 0 5 46 28 29 18 9 12 6 4 0 23 56 46 16 34 36 11 24 24 27 0 15 23 10 24 20 74 94 53 0 1 183 chain 13090 chr10 133797422 + 37593368 37593550 Tigger3c 601 + 321 513 64947 43 7 17 132 chain 256083 chr10 133797422 + 37605685 37608520 L1PA3long 6157 + 3321 6157 8087 1289 1 0 215 0 1 480 0 1 850 chain 26518 chr10 133797422 + 37648098 37648441 THE1A 353 + 0 353 46950 105 6 5 8 0 11 224 chain 35875 chr10 133797422 + 37655309 37655755 L1PBa 3878 + 1401 1847 37485 213 3 0 7 0 4 206 1 0 16 chain 271924 chr10 133797422 + 37657145 37661006 L1PB1 5432 + 1643 5398 7662 419 0 1 129 1 5 297 4 0 38 0 4 306 1 0 30 1 5 51 64 5 197 6 0 298 1 2 304 15 12 76 0 2 138 0 1 61 9 6 142 1 2 289 0 1 160 3 0 5 37 25 59 0 1 96 0 3 102 1 0 131 0 1 55 0 1 11 9 0 24 42 34 22 1 0 26 2 1 15 1 0 44 1 0 15 67 51 24 1 0 22 1 0 6 chain 40719 chr10 133797422 + 37685164 37685717 LTR14 556 + 0 556 34135 267 3 7 172 32 31 79 chain 473052 chr10 133797422 + 37693440 37698958 L1PA5 6144 + 602 6123 3784 5 0 1 561 9 0 639 0 2 503 2 1 67 0 3 65 0 1 33 0 1 118 1 0 516 1 5 47 0 1 176 2 0 335 1 0 659 0 4 600 1 3 419 5 3 753 chain 24972 chr10 133797422 + 37723144 37723444 AluSq10 312 + 1 298 49324 165 0 1 123 4 0 8 chain 101164 chr10 133797422 + 37737201 37738714 LTR12C 1709 + 0 1709 18165 29 46 55 128 12 13 76 1 0 4 0 1 32 10 53 73 7 10 217 0 200 221 1 0 5 6 4 85 52 4 14 11 4 313 1 0 77 29 28 63 chain 79429 chr10 133797422 + 37763692 37764726 MER11B 1079 + 0 1079 21759 73 0 19 128 0 5 91 1 18 203 0 1 4 6 5 219 6 8 137 6 7 106 1 3 15 18 17 20 chain 534736 chr10 133797422 + 37765643 37771784 L1PA4 6152 + 6 6151 1634 54 1 17 503 1 0 256 17 0 203 0 1 1010 1 0 636 8 13 2091 0 2 436 0 1 669 2 0 253 chain 167564 chr10 133797422 + 37778697 37780539 L1PA2 6032 + 3046 4891 11240 9 1 0 49 0 4 1783 chain 3485 chr10 133797422 + 37834967 37835006 LSU-rRNA_Hsa 377 + 326 365 95349 39 chain 6720 chr10 133797422 + 37838985 37839351 MER68 562 + 78 493 78570 21 100 99 34 154 204 57 chain 27912 chr10 133797422 + 37865964 37866300 LTR2B 499 + 7 345 45013 7 1 0 55 1 0 246 0 4 26 chain 544748 chr10 133797422 + 37896970 37902988 L1PA2 6032 + 1 6031 1042 255 1 0 1935 1 0 225 0 1 224 0 1 16 0 4 386 1 2 82 0 3 1043 3 1 334 2 1 1497 0 7 13 chain 75976 chr10 133797422 + 37905061 37905943 L1PA6 6164 + 5274 6161 22585 19 0 4 15 0 4 52 1 0 642 0 1 143 3 0 7 chain 8886 chr10 133797422 + 37994862 37994973 HY1 111 + 0 111 72806 111 chain 402519 chr10 133797422 + 37995443 38000000 L1HS 6032 + 2 4566 5125 150 0 13 91 1 0 232 9 0 123 0 4 1583 1 0 1848 1 0 137 2 0 49 0 4 330 chain 62583 chr10 133797422 + 38000000 38000675 L1PA2 6032 + 4566 5242 25735 348 0 1 327 chain 71031 chr10 133797422 + 38000677 38001451 L1PA2 6032 + 5243 6017 23753 774 chain 18983 chr10 133797422 + 38073685 38073975 MER49 923 + 213 507 57569 77 0 1 38 4 7 65 10 12 10 6 4 61 0 1 12 1 0 6 chain 435516 chr10 133797422 + 38106141 38111492 L1PA7 6471 + 1098 6470 4655 258 0 1 45 12 5 88 3 0 32 1 2 348 0 1 109 0 1 277 1 0 371 1 3 39 0 2 303 1 0 113 0 4 140 0 1 147 0 4 60 0 5 92 1 8 277 5 6 308 33 29 134 3 0 207 1 0 387 0 1 49 1 0 189 4 7 42 0 4 207 0 1 216 0 3 383 18 17 253 0 1 192 chain 5362 chr10 133797422 + 38129562 38129626 MER41B 635 + 481 547 83898 31 0 2 33 chain 54275 chr10 133797422 + 38184550 38185249 L1PB1 5432 + 3091 3787 28126 492 2 1 125 0 1 28 3 0 49 chain 427619 chr10 133797422 + 38187522 38192978 L1PA8 5853 + 382 5853 4782 51 1 7 104 0 2 91 6 0 41 7 1 48 1 2 6 1 0 325 2 16 63 1 0 413 0 5 144 1 6 536 0 1 153 0 10 74 0 4 90 28 0 233 1 0 198 0 2 278 0 4 137 20 19 32 0 1 206 0 13 134 10 1 341 0 1 162 1 2 33 8 7 630 1 3 182 0 2 27 10 11 40 0 1 289 1 0 46 2 0 69 1 0 9 1 0 52 2 1 19 1 0 93 chain 529743 chr10 133797422 + 38216275 38222393 L1PA5 6144 + 0 6132 1839 206 6 5 2507 0 1 267 0 1 595 0 1 347 1 2 103 0 1 395 0 1 862 1 5 263 0 1 344 0 4 221 chain 44374 chr10 133797422 + 38230525 38231171 MER61-int 3695 + 2815 3465 31901 48 1 0 37 1 0 38 1 0 76 16 14 119 1 0 6 3 6 27 0 24 129 28 11 115 chain 8688 chr10 133797422 + 38241876 38242121 L1MA7 2200 + 2 247 73237 17 5 8 16 64 61 36 35 32 51 0 3 21 chain 112996 chr10 133797422 + 38264454 38265659 L1HS 6032 + 3339 4544 16675 1205 chain 23090 chr10 133797422 + 38266246 38266514 L1PA7 6471 + 5719 5987 52224 268 chain 39692 chr10 133797422 + 38266514 38266985 L1PA7 6471 + 5990 6461 34896 471 chain 3772 chr10 133797422 + 38288156 38288201 MADE1 96 + 50 95 93052 45 chain 6711 chr10 133797422 + 38302635 38302721 L1PA17 2846 + 2609 2693 78608 22 1 0 19 1 0 43 chain 14079 chr10 133797422 + 38325140 38325293 L1PA8 5853 + 5411 5564 63486 153 chain 3952 chr10 133797422 + 38325294 38325338 L1PA8 5853 + 5564 5608 91751 44 chain 5647 chr10 133797422 + 38325340 38325407 L1PA8 5853 + 5608 5675 82573 67 chain 13884 chr10 133797422 + 38325420 38325583 L1PA8 5853 + 5686 5847 63757 59 1 0 15 1 0 87 chain 48055 chr10 133797422 + 38354629 38355259 PABL_A 660 + 0 660 30273 20 0 15 33 8 22 75 2 0 8 0 1 57 1 2 46 8 7 222 0 2 150 chain 30308 chr10 133797422 + 38390415 38390808 L1PA6 6164 + 5766 6155 41750 159 6 1 78 6 7 144 chain 21822 chr10 133797422 + 38414058 38414340 AluSp 311 + 2 286 54074 51 12 14 219 chain 487112 chr10 133797422 + 38659189 38665330 L1PA5 6144 + 0 6140 3493 136 10 23 30 0 1 8 1 0 11 3 2 39 1 3 226 1 0 36 11 12 5 0 2 24 0 1 21 0 3 371 32 8 54 0 1 4 1 0 144 14 5 246 7 8 477 1 0 181 0 1 1029 6 11 125 0 1 30 0 2 221 1 0 168 1 0 120 5 8 2009 1 2 192 1 5 129 3 0 5 chain 212578 chr10 133797422 + 38665480 38667986 L1PA6 6164 + 3614 6153 9247 7 0 8 1020 1 0 563 1 0 22 4 6 24 0 20 28 0 4 28 0 1 441 1 2 105 1 0 260 chain 126072 chr10 133797422 + 38681374 38683122 L1PB1 5432 + 3340 5082 14543 50 0 1 140 0 1 196 49 9 85 1 0 82 2 31 235 0 1 388 13 12 56 7 4 55 0 2 17 0 2 41 0 1 63 0 1 202 0 2 28 6 5 32 chain 298560 chr10 133797422 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133797422 + 39182459 39184235 L1P1 4361 + 2871 4321 16018 426 0 1 202 0 2 58 0 1 37 332 0 77 2 1 423 0 5 47 2 1 153 1 0 16 chain 96811 chr10 133797422 + 39215602 39216689 L1PA2 6032 + 4941 6028 18677 125 0 2 295 0 1 657 3 0 7 chain 384086 chr10 133797422 + 39259317 39264173 L1PA5 6144 + 15 4887 5410 232 4 5 485 4 0 6 1 5 58 5 6 417 0 1 371 1 2 61 1 3 528 1 2 529 0 1 184 4 6 14 14 23 303 0 1 241 4 5 201 3 0 584 20 21 107 0 1 114 14 9 116 0 1 229 chain 32296 chr10 133797422 + 39334341 39335855 L1PA2 6032 + 4513 6031 40115 710 0 6 637 5 0 7 0 5 141 2 0 12 chain 106134 chr10 133797422 + 39356881 39358109 L1PA3long 6157 + 2491 3728 17552 129 0 3 79 1 6 469 1 0 517 0 2 32 chain 180065 chr10 133797422 + 39428847 39431005 L1PA3long 6157 + 4013 6157 10585 48 0 1 196 15 0 66 0 1 1059 2 0 628 1 2 143 chain 194067 chr10 133797422 + 39470571 39472841 L1PA3long 6157 + 3882 6157 9921 103 0 1 64 0 1 1427 0 1 468 0 2 208 chain 97321 chr10 133797422 + 39479371 39480452 L1PA2 6032 + 4948 6030 18618 230 0 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42665137 42670501 L1PA4 6152 + 11 5353 3815 342 4 5 222 1 0 216 0 1 39 17 0 123 6 0 4394 chain 8661 chr10 133797422 + 42674941 42675083 MER6A 605 + 377 525 73323 58 10 13 49 5 8 20 chain 22193 chr10 133797422 + 42713371 42713628 L1PA5 6144 + 5892 6144 53570 90 5 0 162 chain 12898 chr10 133797422 + 42726745 42727110 MSTA 426 + 0 408 65257 28 0 1 64 0 1 40 2 0 30 147 189 16 25 26 13 chain 16327 chr10 133797422 + 42732021 42732203 L1PA6 6164 + 5980 6162 60600 182 chain 21978 chr10 133797422 + 42765160 42765436 L1PA6 6164 + 5895 6162 53870 5 1 0 71 1 0 4 1 0 181 6 0 6 chain 143420 chr10 133797422 + 42846670 42848326 SVA_D 2077 + 0 2063 12817 8 0 19 9 0 5 12 0 8 11 29 0 470 0 80 290 0 137 60 0 79 115 0 98 328 0 10 324 chain 15140 chr10 133797422 + 42862458 42862693 L1PA8 5853 + 5608 5852 62112 69 24 22 41 2 1 19 3 2 13 0 13 64 chain 116084 chr10 133797422 + 42899964 42901286 SVA_C 1631 + 213 1631 16217 429 1 9 186 0 42 110 0 41 159 0 1 338 0 4 99 chain 17780 chr10 133797422 + 42909478 42909739 MER1B 344 + 63 329 58919 91 3 4 108 18 22 41 chain 16570 chr10 133797422 + 42911038 42911432 L1PB1 5432 + 5038 5398 60291 8 0 1 56 1 2 9 9 0 24 1 0 4 3 2 13 6 2 9 3 1 51 2 1 15 1 0 45 1 0 10 69 55 20 5 4 22 1 0 6 chain 10338 chr10 133797422 + 42967241 42967416 L1PB1 5432 + 5116 5281 69719 19 1 0 12 16 11 9 2 0 53 2 1 15 2 1 44 chain 144598 chr10 133797422 + 43242545 43244402 SVA_A 1864 + 15 1864 12721 610 0 71 28 1 0 39 1 0 31 40 1 58 1 4 30 1 0 65 40 0 19 34 0 51 3 0 76 2 0 46 5 7 77 0 37 599 chain 2155 chr10 133797422 + 43243450 43243490 SVA_A 1864 + 766 805 35692 1 0 2 31 3 0 5 chain 1832 chr10 133797422 + 43243509 43243543 SVA_A 1864 + 824 861 35692 29 3 6 2 chain 31301 chr10 133797422 + 43320563 43321015 LTR7B 505 + 0 495 40895 108 0 10 66 6 68 28 29 0 82 1 0 46 0 2 31 14 13 41 chain 147531 chr10 133797422 + 43328826 43330634 SVA_A 1864 + 27 1864 12513 175 0 1 519 49 6 33 0 2 49 0 73 65 2 0 148 2 0 46 7 9 129 2 0 582 chain 73873 chr10 133797422 + 43337202 43338170 LTR5_Hs 974 + 0 974 23128 285 0 1 181 0 1 81 4 3 68 4 5 31 1 0 163 8 15 19 20 18 103 chain 24321 chr10 133797422 + 43415979 43416266 AluSp 311 + 5 292 50303 287 chain 59100 chr10 133797422 + 43422676 43423373 SVA_E 1901 + 14 1896 26635 139 1 0 322 27 1219 59 6 0 143 chain 5066 chr10 133797422 + 43466756 43466877 Tigger1 2417 + 1304 1439 85330 28 30 43 19 11 12 33 chain 50032 chr10 133797422 + 43501968 43502532 L1PA5 6144 + 5569 6143 29555 161 0 1 264 0 9 139 chain 9241 chr10 133797422 + 43502608 43502743 Tigger3b 1229 + 197 334 72033 89 1 5 37 2 0 6 chain 5200 chr10 133797422 + 43506533 43506597 LTR53 516 + 157 221 84674 64 chain 83835 chr10 133797422 + 43537841 43538951 MER11A 1151 + 9 1151 20839 99 0 2 66 8 0 54 0 4 54 14 10 28 0 2 39 0 1 243 9 6 56 6 9 137 6 40 212 0 1 79 chain 68454 chr10 133797422 + 43543818 43544652 SVA_A 1864 + 618 1862 24346 72 2 0 37 2 0 141 45 459 535 chain 24262 chr10 133797422 + 43577447 43577832 THE1D 372 + 0 372 50402 75 19 0 20 3 2 63 8 6 19 5 8 39 9 15 125 chain 384547 chr10 133797422 + 43586944 43591470 HERVK9-int 4720 + 183 4716 5405 1042 0 1 1044 1 0 782 0 4 50 0 1 526 1 0 32 0 1 414 1 0 254 0 1 55 2 0 222 8 12 80 1 0 5 0 1 6 chain 37548 chr10 133797422 + 43591475 43591969 MER9a3 513 + 0 497 36373 18 0 2 90 0 1 145 10 9 169 0 1 62 chain 10082 chr10 133797422 + 43599671 43599823 LTR49-int 1717 + 582 733 70234 57 9 10 42 1 0 28 1 0 14 chain 12509 chr10 133797422 + 43632705 43632913 MER30 238 + 0 225 65975 16 17 0 8 4 23 61 5 0 8 10 30 79 chain 56027 chr10 133797422 + 43656188 43656845 L1PA6 6164 + 5507 6162 27556 157 1 2 165 0 1 324 4 0 6 chain 537206 chr10 133797422 + 43716710 43722832 L1PA4 6152 + 10 6143 1499 953 0 1 590 0 1 160 0 1 670 2 6 1257 5 6 632 1 3 668 1 0 413 5 6 272 6 7 487 chain 14710 chr10 133797422 + 43823856 43824156 MER1B 344 + 32 344 62663 25 9 8 15 8 12 85 43 39 37 19 32 59 chain 3405 chr10 133797422 + 43856669 43856724 MER53 195 + 16 72 96021 11 5 6 39 chain 4918 chr10 133797422 + 43890950 43891165 MER8 282 + 3 256 86066 55 1 0 4 55 97 18 67 64 15 chain 27005 chr10 133797422 + 43896257 43896601 THE1A 353 + 0 350 46264 105 6 5 88 1 0 4 0 1 37 0 7 103 chain 155705 chr10 133797422 + 44037594 44039310 L1PA3long 6157 + 4443 6157 12025 1695 2 0 19 chain 509057 chr10 133797422 + 44090921 44097052 L1PA6 6164 + 0 6161 2805 371 25 32 97 11 10 371 1 0 169 1 0 5 0 1 19 11 14 16 3 0 234 7 8 770 0 3 1060 1 5 4 0 1 611 1 4 496 0 2 345 0 1 930 0 1 379 8 17 185 chain 462392 chr10 133797422 + 44137219 44142552 L1PA4 6152 + 6 5881 4068 454 18 13 107 1 0 1052 0 529 623 0 4 163 0 1 274 0 1 38 0 2 460 1 0 560 1 3 49 9 13 282 0 1 518 0 5 723 chain 114385 chr10 133797422 + 44214481 44216017 THE1B-int 1605 + 13 1568 16493 57 1 0 184 0 1 15 0 2 28 0 6 79 14 0 9 7 8 15 1 0 15 10 35 127 4 0 284 5 7 311 9 10 193 0 1 168 chain 21302 chr10 133797422 + 44216054 44216387 THE1B 368 + 0 344 54762 44 19 26 99 6 5 20 1 0 82 6 12 56 chain 124840 chr10 133797422 + 44227532 44229071 L1PA7 6471 + 4918 6460 14733 37 4 5 232 1 3 352 0 1 49 1 0 24 1 0 99 0 1 585 0 1 9 1 0 144 chain 24900 chr10 133797422 + 44254550 44255046 L1PB1 5432 + 4957 5424 49431 38 1 2 6 1 0 31 7 8 4 0 1 5 1 0 20 0 1 30 1 0 11 1 0 24 1 0 9 27 20 53 2 1 16 1 0 43 1 0 13 24 15 15 12 9 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 555734 chr10 133797422 + 44268315 44274466 L1PA3long 6157 + 4 6157 370 4289 1 3 1861 chain 253036 chr10 133797422 + 44274864 44278366 L1PA7 6471 + 2028 6465 8155 99 0 5 28 51 0 329 4 3 148 0 1 222 9 1299 152 0 1 171 2 3 966 0 2 163 1 5 516 314 0 174 23 20 130 chain 5155 chr10 133797422 + 44319582 44319647 L1MB7 1623 + 114 179 84881 65 chain 28181 chr10 133797422 + 44405861 44406161 AluYa5 310 + 0 299 44592 132 1 0 167 chain 45534 chr10 133797422 + 44430492 44431004 MER9a1 513 + 0 513 31290 382 0 1 130 chain 72081 chr10 133797422 + 44442219 44443008 L1PA3long 6157 + 5361 6150 23517 789 chain 499766 chr10 133797422 + 44480314 44492313 L1PA6 6164 + 0 6162 3132 159 13 10 26 0 1 4 1 0 35 4 6 51 0 1 169 1 0 57 0 2 46 1 0 287 0 1 463 0 1 4 1 0 1002 8 0 35 5841 0 829 1 2 47 0 5 455 2 0 546 0 1 930 0 3 193 10 13 778 chain 36131 chr10 133797422 + 44549136 44549633 MER51A 677 + 0 661 37322 109 0 1 22 0 9 16 1 0 13 0 63 12 6 106 233 8 0 77 chain 2857 chr10 133797422 + 44550871 44550908 MER47C 97 + 15 66 101172 7 0 14 30 chain 5257 chr10 133797422 + 44571958 44572020 MSTB 430 + 7 69 84403 62 chain 56816 chr10 133797422 + 44579913 44580586 L1PA7 6471 + 4680 5355 27319 534 0 1 81 1 2 57 chain 22334 chr10 133797422 + 44582987 44583275 AluSc 308 + 8 293 53355 44 8 5 236 chain 56962 chr10 133797422 + 44583585 44584212 L1PA4 6152 + 5524 6151 27280 627 chain 434413 chr10 133797422 + 44594546 44600322 L1PA8 5853 + 108 5853 4678 68 3 5 48 29 30 37 63 47 32 0 1 235 1 0 4 0 1 17 0 6 4 6 0 502 0 2 18 8 9 152 19 11 143 35 6 39 1 0 77 4 1 5 0 3 103 11 13 75 0 1 215 2 0 62 1 0 138 0 2 1161 25 26 630 3 14 269 0 1 275 0 1 412 0 2 76 0 1 139 8 10 150 2 0 5 1 3 116 4 5 48 1 0 44 2 0 70 2 1 9 2 1 37 0 1 12 3 2 19 1 0 93 chain 237657 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45056717 45056782 MER41B 635 + 482 547 83026 65 chain 41367 chr10 133797422 + 45095270 45095799 LTR61 567 + 0 566 33751 22 7 44 69 0 5 54 4 0 25 6 5 342 chain 35015 chr10 133797422 + 45098515 45099197 L1PB1 5432 + 4853 5427 38009 62 0 4 184 15 11 20 1 0 12 1 0 12 22 16 45 1 0 17 1 0 32 0 1 10 86 5 12 24 16 15 2 0 5 1 0 14 2 0 24 1 0 22 18 16 14 2 0 5 chain 22270 chr10 133797422 + 45137319 45137816 L1PREC2 3366 + 2590 3047 53451 99 0 1 27 1 0 11 25 24 54 1 0 44 1 0 4 3 0 13 55 42 13 2 0 30 3 0 7 39 25 22 6 4 37 chain 123405 chr10 133797422 + 45259324 45260985 SVA_C 1631 + 41 1624 14962 337 0 4 75 0 39 44 40 0 187 0 40 85 4 0 58 128 0 8 1 0 32 2 0 14 12 11 25 12 10 8 1 0 233 3 1 221 0 20 131 chain 6835 chr10 133797422 + 45260154 45260258 SVA_C 1631 + 955 1102 67746 9 27 71 60 1 0 7 chain 39450 chr10 133797422 + 45261980 45262458 LTR15 485 + 0 485 35045 218 4 10 91 4 5 161 chain 497290 chr10 133797422 + 45265801 45271944 L1PA6 6164 + 0 6158 3229 184 11 12 252 9 1 12 10 0 108 1 0 218 0 17 262 2 1 6 0 1 16 0 1 5 1 0 23 0 1 4 1 0 129 0 1 1070 2 3 602 1 0 4 0 1 233 1 7 22 6 7 13 0 1 505 2 3 163 0 1 327 1 3 430 7 2 642 0 4 15 0 4 88 1 0 754 chain 25765 chr10 133797422 + 45274163 45274504 MER4A1 472 + 0 346 48077 74 6 7 48 0 4 213 chain 27674 chr10 133797422 + 45278975 45279303 LTR3 431 + 94 423 45364 250 0 1 78 chain 35291 chr10 133797422 + 45286459 45286898 LTR3 431 + 0 424 37831 168 19 4 252 chain 42455 chr10 133797422 + 45287565 45288202 PABL_A 660 + 31 660 33093 370 67 57 37 0 1 69 5 4 4 0 1 42 6 7 37 chain 31174 chr10 133797422 + 45336527 45336967 MLT2A1 477 + 0 470 41003 168 22 17 108 1 2 87 18 52 36 chain 359621 chr10 133797422 + 45336970 45341477 HERVL-int 5654 + 0 4523 5806 79 0 1 69 15 10 114 0 9 61 0 3 291 9 8 17 3 1 127 0 1 333 1 0 53 0 1 119 123 129 322 2 3 897 0 2 1755 0 1 117 chain 373083 chr10 133797422 + 45341486 45345823 L1P1 4361 + 1 4341 5603 1441 0 2 866 0 4 1369 0 1 133 1 0 333 1 0 155 2 1 22 2 1 12 chain 142398 chr10 133797422 + 45346206 45349205 SVA_A 1864 + 28 1862 12900 464 268 0 190 648 0 8 2 0 72 3 5 50 196 0 23 2 0 35 34 0 12 0 36 174 64 21 15 3 0 12 2 1 17 4 1 110 8 5 583 chain 6668 chr10 133797422 + 45346708 45346938 SVA_A 1864 + 493 795 33585 36 5 8 39 6 5 31 4 1 28 12 83 39 2 4 28 chain 18787 chr10 133797422 + 45347128 45347776 SVA_A 1864 + 905 979 33585 3 613 39 32 chain 777 chr10 133797422 + 45347134 45347168 SVA_A 1864 + 1019 1053 54400 34 chain 1332 chr10 133797422 + 45347633 45347667 SVA_A 1864 + 579 613 81416 34 chain 3312 chr10 133797422 + 45347667 45347741 SVA_A 1864 + 800 837 91841 1 37 0 36 chain 4552 chr10 133797422 + 45347911 45348068 SVA_A 1864 + 1112 1222 33585 18 3 0 15 1 0 6 40 0 16 4 1 54 chain 269804 chr10 133797422 + 45358756 45362159 L1P2 5180 + 2 3398 7710 147 2 1 39 6 5 53 6 5 263 1 0 48 1 0 224 1 0 6 2 1 190 0 1 82 9 10 160 1 0 485 1 0 458 0 1 25 0 2 62 0 13 36 18 0 864 1 0 31 1 2 41 0 3 23 1 0 115 chain 468147 chr10 133797422 + 45362169 45368165 L1PA6 6164 + 2 6159 3903 105 230 218 184 2 1 48 1 0 128 12 5 57 0 128 59 0 26 214 122 132 38 9 19 1826 0 2 2120 0 4 172 0 2 669 chain 522268 chr10 133797422 + 45387825 45395617 L1PA5 6144 + 3 6144 2166 150 10 26 207 0 95 484 3 0 62 0 1 185 2 1 1061 1 0 34 0 4 942 1761 0 418 1 0 9 0 1 577 1 0 294 0 1 1577 2 1 11 chain 141587 chr10 133797422 + 45391053 45392722 SVA_D 2077 + 0 2077 12971 19 5 0 591 13 11 65 0 40 84 24 0 80 0 396 29 0 1 30 2 0 39 12 16 676 chain 218061 chr10 133797422 + 45413040 45415481 L1PA5 6144 + 3579 6030 9091 768 0 4 203 0 1 19 0 1 712 0 3 4 0 1 735 chain 8934 chr10 133797422 + 45415484 45415587 L1PA5 6144 + 6039 6142 72706 103 chain 44891 chr10 133797422 + 45437400 45438017 LTR10E 629 + 0 629 31646 18 25 41 105 0 2 130 2 1 27 12 11 44 1 0 189 2 0 55 1 0 6 chain 113751 chr10 133797422 + 45479817 45481407 THE1B-int 1605 + 0 1599 16584 17 0 1 290 0 8 116 68 76 93 1 0 34 5 4 37 3 0 12 11 10 55 37 36 806 1 0 4 chain 33844 chr10 133797422 + 45488475 45488949 LTR3A 482 + 3 482 38815 105 13 0 52 7 16 169 1 8 45 5 6 4 0 1 73 chain 6212 chr10 133797422 + 45497930 45498008 MLT1B 390 + 312 390 80311 78 chain 156102 chr10 133797422 + 45511415 45513231 SVA_D 2077 + 42 2069 11996 502 40 0 161 0 1 3 0 6 47 40 0 158 1 0 24 0 38 34 0 100 65 0 49 73 0 98 668 chain 3761 chr10 133797422 + 45536623 45536697 L1MB8 1703 + 837 907 93133 24 10 8 25 2 0 13 chain 310364 chr10 133797422 + 45538067 45541579 L1PA4 6152 + 1736 6151 6605 287 0 1 516 4 3 638 1 0 215 0 764 6 0 5 177 0 4 243 2 0 156 5 0 83 0 138 703 1 0 363 0 1 112 chain 25524 chr10 133797422 + 45571173 45571557 LTR7 482 + 0 469 48446 101 15 14 17 0 51 41 5 37 44 0 1 61 0 1 51 13 14 36 chain 203106 chr10 133797422 + 45571570 45574605 HERVH-int 3825 + 0 2974 9604 316 29 28 20 15 16 30 11 10 26 132 142 18 7 0 8 1 0 11 88 88 15 0 38 12 1 0 137 15 0 191 1 0 130 101 18 44 1 0 131 9 0 41 1 0 41 2 1 267 0 1 159 11 19 128 4 9 145 1 0 7 1 2 181 6 4 27 5 6 325 1 0 182 chain 5753 chr10 133797422 + 45572787 45572862 HERVH-int 3825 + 265 339 82117 68 1 0 6 chain 28991 chr10 133797422 + 45590826 45591255 LTR7B 505 + 0 497 43336 10 0 2 93 0 10 60 0 38 12 3 27 26 0 2 73 17 9 26 0 1 52 15 14 42 chain 108492 chr10 133797422 + 45600577 45601937 LTR12C 1709 + 0 1707 17254 18 0 14 151 0 3 76 17 27 10 8 0 165 0 1 185 0 278 143 0 47 106 0 4 330 1 0 63 12 11 75 chain 272473 chr10 133797422 + 45668272 45671832 L1PA6 6164 + 1888 6162 7644 306 9 4 7 0 491 493 0 1 57 15 33 242 0 1 816 322 516 7 0 5 451 0 4 510 1 0 91 1 0 224 0 7 8 chain 53254 chr10 133797422 + 45689302 45690001 L1PB 1623 + 679 1363 28483 108 1 0 153 2 1 360 13 0 62 chain 16443 chr10 133797422 + 45838006 45838428 L1PB1 5432 + 5039 5418 60458 60 15 6 11 6 0 9 1 0 11 1 0 7 36 30 29 1 2 13 20 20 43 1 0 16 1 0 4 19 8 19 2 0 5 7 6 8 2 0 24 1 0 21 1 0 13 2 1 13 chain 19276 chr10 133797422 + 45872935 45873172 AluSp 311 + 62 297 57265 67 2 0 168 chain 26072 chr10 133797422 + 45961958 45962395 LTR8 732 + 162 628 47620 143 14 44 84 6 9 41 29 28 14 16 13 90 chain 4245 chr10 133797422 + 46041367 46041414 LTR54 533 + 486 533 89849 47 chain 32171 chr10 133797422 + 46053960 46054405 MER4A1 472 + 0 472 40217 12 13 15 168 1 5 6 4 0 19 0 21 192 6 10 24 chain 25945 chr10 133797422 + 46071503 46071777 AluYb8 318 + 34 308 47800 274 chain 10377 chr10 133797422 + 46077971 46078324 MSTB1 431 + 64 431 69657 14 3 4 39 201 214 96 chain 28554 chr10 133797422 + 46094951 46095291 LTR14A 344 + 0 344 44025 157 3 7 180 chain 53581 chr10 133797422 + 46120433 46121132 L1PB 1623 + 679 1363 28366 108 1 0 153 2 1 360 13 0 62 chain 107953 chr10 133797422 + 46159870 46161847 MER57-int 2662 + 1033 2661 17333 93 8 9 180 0 3 12 1 0 74 1 0 35 8 10 89 0 1 302 17 0 13 0 2 42 0 1 9 0 1 5 0 2 32 312 2 160 9 8 172 0 1 37 5 1 6 1 0 71 72 58 40 36 22 13 8 6 4 1 0 7 3 0 23 9 19 27 3 0 31 1 0 5 chain 5007 chr10 133797422 + 46165582 46165657 L1PB1 5432 + 5357 5427 85623 13 1 0 21 1 0 13 1 0 18 2 0 5 chain 5066 chr10 133797422 + 46190792 46190924 L1MB1 2102 + 1382 1526 85325 18 1 0 4 2 8 11 39 46 57 chain 28508 chr10 133797422 + 46208909 46209340 MER4A1 472 + 2 458 44117 179 69 94 183 chain 35735 chr10 133797422 + 46209705 46210163 LTR2 463 + 0 463 37574 55 0 3 241 8 9 54 12 13 88 chain 29648 chr10 133797422 + 46269529 46269872 LTR14A 344 + 0 344 42436 166 0 1 177 chain 52864 chr10 133797422 + 46347762 46348456 L1PB 1623 + 684 1363 28616 103 1 0 153 2 1 365 13 0 57 chain 27311 chr10 133797422 + 46370126 46370461 LTR14A 344 + 0 344 45814 46 0 8 248 0 1 41 chain 16252 chr10 133797422 + 46481767 46482033 MER57-int 2662 + 40 293 60680 30 47 29 9 1 0 62 0 6 117 chain 79999 chr10 133797422 + 46532714 46533645 L1PA5 6144 + 5195 6143 21626 102 0 4 126 0 15 545 8 11 137 5 0 8 chain 21512 chr10 133797422 + 46542298 46542690 THE1D 372 + 0 370 54492 13 0 2 17 1 0 22 33 25 25 0 1 26 1 5 45 17 19 25 1 0 33 21 0 12 0 1 5 2 1 93 chain 28826 chr10 133797422 + 46616416 46616816 L1MB8 1703 + 1183 1585 43588 69 3 0 28 3 1 5 0 2 133 1 0 13 2 1 57 0 4 34 0 3 52 chain 6500 chr10 133797422 + 46619116 46619192 MLT1F1 559 + 352 428 79349 76 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2 0 5 7 6 8 2 0 24 1 0 21 1 0 13 2 1 13 chain 9570 chr10 133797422 + 48077322 48077440 MSTB1-int 1597 + 0 118 71331 118 chain 2947 chr10 133797422 + 48112403 48112434 U2 167 + 0 31 100415 31 chain 28689 chr10 133797422 + 48186355 48186710 THE1A 353 + 0 353 43818 109 2 1 92 1 0 151 chain 20260 chr10 133797422 + 48192309 48192609 AluSp 311 + 10 301 56064 62 13 8 52 1 0 5 5 8 5 3 0 97 3 0 54 chain 6627 chr10 133797422 + 48198462 48198540 MER101 471 + 0 78 78877 78 chain 99116 chr10 133797422 + 48220126 48221573 L1PB1 5432 + 4005 5422 18399 622 25 22 147 8 0 9 1 9 275 4 14 12 24 15 4 1 0 11 1 0 13 20 14 48 2 1 16 1 0 43 1 0 16 1 0 6 14 6 18 3 1 5 1 0 14 2 0 20 6 5 20 1 0 13 1 0 18 chain 7223 chr10 133797422 + 48229331 48229599 MER34B-int 733 + 374 612 76876 8 23 0 89 132 125 16 chain 5375 chr10 133797422 + 48294881 48294966 Tigger3c 601 + 440 526 83821 46 9 10 30 chain 12883 chr10 133797422 + 48316235 48316448 Tigger3a 397 + 158 375 65285 80 0 28 9 3 5 15 26 0 80 chain 88180 chr10 133797422 + 48346121 48347150 LTR13 1007 + 0 1007 20011 425 12 5 258 15 0 319 chain 202318 chr10 133797422 + 48348882 48351262 L1PA7 6471 + 2564 4955 9624 68 5 0 62 0 2 169 0 1 29 0 3 198 0 4 449 0 4 276 1 0 428 1 0 4 0 1 12 0 2 573 0 1 105 chain 416515 chr10 133797422 + 48372220 48377370 L1PA7 6471 + 1300 6469 4931 454 7 0 171 3 0 20 1 0 55 5 6 103 1 0 393 8 0 139 22 4 36 0 10 133 5 11 261 0 4 198 13 14 183 0 2 47 0 4 634 2 1 74 1 0 4 0 1 295 1 0 20 1 5 92 0 4 45 5 0 465 0 1 284 0 5 142 1 4 122 1 0 59 0 3 15 0 11 297 0 1 181 4 11 135 2 0 10 chain 3752 chr10 133797422 + 48468567 48468617 MLT1D 503 + 405 455 93222 50 chain 9056 chr10 133797422 + 48483252 48483377 MER85 139 + 2 139 72431 92 3 15 30 chain 3985 chr10 133797422 + 48492854 48492900 MADE1 96 + 50 96 91552 46 chain 93620 chr10 133797422 + 48529732 48531411 L1PB1 5432 + 4095 5423 19091 103 0 1 7 1 0 104 314 0 316 3 0 257 2 0 215 18 16 19 2 1 10 1 0 12 20 14 50 2 1 16 2 1 16 0 1 26 1 0 13 2 1 5 2 0 8 9 0 18 17 14 6 2 0 24 1 0 22 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49436947 49437319 THE1B 368 + 0 368 53259 26 0 1 150 65 61 68 7 6 56 chain 123186 chr10 133797422 + 49463989 49465535 THE1B-int 1605 + 34 1605 14995 396 1 26 108 1 0 588 0 1 452 chain 54481 chr10 133797422 + 49565314 49566219 L1PA13 3608 + 2704 3548 28057 19 0 3 5 1 0 274 1 0 15 0 1 48 12 10 50 31 0 6 2 1 24 1 0 113 2 0 62 1 0 51 13 10 47 9 5 20 6 5 15 28 21 9 1 0 3 6 0 14 4 1 12 chain 46015 chr10 133797422 + 49587826 49588475 LTR66 600 + 8 600 31054 4 1 0 382 71 0 12 2 0 52 0 16 113 0 1 12 chain 9404 chr10 133797422 + 49636699 49636827 MER85 139 + 1 139 71697 95 4 14 29 chain 3599 chr10 133797422 + 49684951 49685045 MLT2C2 476 + 158 251 94435 35 40 39 19 chain 59511 chr10 133797422 + 49686052 49686912 MER11A 1151 + 0 948 26506 79 0 8 113 1 0 30 1 0 66 0 11 98 12 16 252 15 18 11 3 4 39 0 4 53 8 15 7 5 0 10 1 59 50 1 0 5 chain 479410 chr10 133797422 + 49714954 49720426 L1PA4 6152 + 14 5520 3649 104 9 23 671 0 3 569 0 1 1309 5 0 9 0 5 245 1 0 61 5 6 145 0 1 772 6 7 585 1 15 975 chain 100316 chr10 133797422 + 49729382 49731077 L1PB1 5432 + 3941 5279 18261 31 10 6 149 323 0 78 0 2 413 5 1 28 0 3 53 0 2 169 0 1 221 40 16 20 1 0 10 1 0 12 2 0 3 2 0 9 2 0 52 2 1 16 6 5 37 chain 15264 chr10 133797422 + 49827433 49827620 MER107 203 + 7 195 61959 64 0 1 123 chain 26734 chr10 133797422 + 49931257 49931694 LTR8 732 + 162 628 46635 143 14 44 84 6 9 41 29 28 14 16 13 90 chain 141096 chr10 133797422 + 49969757 49971348 SVA_C 1631 + 0 1631 13021 13 8 8 187 1 0 319 1 0 332 0 45 99 0 1 610 4 0 17 chain 53038 chr10 133797422 + 49999252 49999951 L1PB 1623 + 679 1363 28560 108 1 0 153 2 1 360 13 0 62 chain 12546 chr10 133797422 + 50013466 50013672 LTR47A 437 + 219 424 65907 4 1 0 31 6 0 32 18 24 114 chain 4077 chr10 133797422 + 50058481 50058530 MER5A1 166 + 72 121 90911 49 chain 164696 chr10 133797422 + 50155943 50157815 L1PA4 6152 + 4253 6138 11436 578 1 10 460 0 1 17 0 1 497 0 1 164 1 2 21 1 0 33 0 1 99 chain 7088 chr10 133797422 + 50169241 50169331 MER70A 477 + 382 472 77304 90 chain 26669 chr10 133797422 + 50177079 50177432 THE1B 368 + 13 368 46730 27 5 10 122 2 1 27 2 0 168 chain 14638 chr10 133797422 + 50181699 50181860 L1PA5 6144 + 2829 2990 62750 161 chain 51802 chr10 133797422 + 50215719 50216316 L1PA7 6471 + 5868 6470 28938 365 0 4 86 0 1 146 chain 40645 chr10 133797422 + 50241565 50242048 L1PA7 6471 + 5986 6470 34191 296 0 3 180 2 0 5 chain 466146 chr10 133797422 + 50262408 50270206 L1PA4 6152 + 13 5347 3959 957 0 2 5 1 0 1197 0 2 306 2471 0 2824 0 4 37 chain 94291 chr10 133797422 + 50296746 50297780 L1PA3long 6157 + 5119 6157 19000 191 0 4 843 chain 5315 chr10 133797422 + 50345613 50345840 Tigger4a 237 + 0 236 84120 19 1 0 9 0 148 10 138 0 50 chain 123024 chr10 133797422 + 50349892 50351444 THE1A-int 1579 + 0 1560 15021 261 0 1 185 14 9 148 4 3 32 0 8 466 0 4 190 1 2 251 chain 18794 chr10 133797422 + 50351463 50351778 THE1A 353 + 0 316 57786 44 0 10 9 20 11 16 37 38 74 1 0 114 chain 104236 chr10 133797422 + 50352774 50353916 L1PA4 6152 + 3324 4466 17792 1142 chain 117684 chr10 133797422 + 50353917 50357076 L1PA4 6152 + 4466 6143 15942 1029 1791 315 51 0 1 197 7 0 84 chain 109135 chr10 133797422 + 50355279 50356582 SVA_B 1603 + 3 1603 17160 6 1 0 15 5 29 139 4 5 369 0 39 141 0 40 42 1 202 96 0 1 47 0 2 104 1 0 176 8 1 140 2 0 6 chain 5576 chr10 133797422 + 50366043 50366254 L1PA8A 6298 + 5294 5509 44605 195 5 9 11 chain 56607 chr10 133797422 + 50366264 50366964 L1PA7 6471 + 5773 6465 27386 620 0 2 6 6 0 57 4 0 7 chain 3832 chr10 133797422 + 50366964 50367109 L1PA8A 6298 + 5509 5654 44605 145 chain 10321 chr10 133797422 + 50418999 50419193 MER44A 345 + 148 345 69762 33 1 4 55 0 4 27 14 15 32 13 9 12 1 0 6 chain 41878 chr10 133797422 + 50424981 50425651 L1PA16 3655 + 2998 3624 33439 50 7 14 18 32 0 12 0 4 104 6 5 26 0 1 58 2 0 285 49 28 21 chain 12411 chr10 133797422 + 50429277 50429448 Tigger3a 397 + 158 326 66119 80 4 1 87 chain 86072 chr10 133797422 + 50445403 50446426 MER11B 1079 + 0 1042 20421 316 1 18 436 1 3 269 chain 296170 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50705053 THE1B 368 + 0 368 52642 19 1 2 154 72 76 117 chain 12055 chr10 133797422 + 50749784 50749952 Tigger3a 397 + 139 311 66751 137 10 14 21 chain 203118 chr10 133797422 + 50760321 50762652 L1PA5 6144 + 2991 5337 9602 288 1 0 739 1 6 204 1 2 114 0 4 894 0 1 54 0 4 11 0 1 24 chain 3543 chr10 133797422 + 50766016 50766056 MSTA 426 + 386 426 94923 40 chain 26472 chr10 133797422 + 50767481 50767781 AluYk4 311 + 0 299 47024 126 1 0 173 chain 69896 chr10 133797422 + 50794969 50795828 THE1A-int 1579 + 714 1574 24018 73 0 7 7 7 0 684 0 1 88 chain 28158 chr10 133797422 + 50795833 50796187 THE1A 353 + 0 353 44618 109 2 1 243 chain 142736 chr10 133797422 + 50826425 50828088 L1P1 4361 + 1774 3433 12878 369 2 1 802 5 1 198 14 15 11 1 0 204 0 1 57 chain 4673 chr10 133797422 + 50832252 50832310 MER63B 433 + 335 393 87427 58 chain 4563 chr10 133797422 + 50846098 50846180 Tigger4b 360 + 44 120 88001 13 20 14 49 chain 11428 chr10 133797422 + 50963890 50964213 LTR12D 1347 + 584 752 67867 94 173 0 15 0 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53 chain 12850 chr10 133797422 + 51742882 51743046 L1PA8 5853 + 5691 5853 65351 49 2 1 19 2 1 92 chain 29139 chr10 133797422 + 51884164 51884474 AluYg6 310 + 0 310 43134 310 chain 41681 chr10 133797422 + 51916080 51916641 MER41A 554 + 0 553 33565 204 18 13 148 4 0 65 0 1 122 chain 21117 chr10 133797422 + 52011727 52012081 THE1B 368 + 0 368 54987 15 2 0 16 28 33 52 0 4 52 2 1 20 2 0 54 14 25 34 1 0 62 chain 55759 chr10 133797422 + 52204433 52205469 MER11B 1079 + 1 1051 27643 295 30 3 59 0 5 42 0 6 46 18 17 20 26 14 15 0 1 52 5 11 8 5 0 10 159 196 16 8 9 53 0 1 96 1 0 11 0 2 44 1 2 16 chain 558548 chr10 133797422 + 52233328 52239334 L1PA2 6032 + 28 6032 222 890 1 0 2872 1 0 2242 chain 60568 chr10 133797422 + 52270215 52270880 L1PA4 6152 + 5486 6151 26210 665 chain 51827 chr10 133797422 + 52278013 52278644 L1PA7 6471 + 5510 6146 28931 112 3 1 170 0 1 96 10 13 70 0 1 18 0 1 76 0 1 76 chain 75454 chr10 133797422 + 52292674 52293500 L1PA3long 6157 + 3908 4735 22731 793 0 1 33 chain 4057 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475 83789 22 60 66 54 chain 6001 chr10 133797422 + 52852606 52852697 HY4 93 + 0 90 81070 65 7 6 19 chain 48628 chr10 133797422 + 52945484 52946067 LTR10C 591 + 0 591 30077 266 0 1 5 1 0 37 0 1 198 0 2 13 6 11 57 chain 23425 chr10 133797422 + 53066858 53067303 L1PB1 5432 + 5020 5427 51715 83 3 0 11 1 0 24 2 1 7 1 0 12 18 12 50 2 1 15 1 0 44 1 0 16 27 16 15 2 0 5 1 0 14 2 0 23 4 1 21 1 0 9 0 1 4 2 0 17 2 0 5 chain 78615 chr10 133797422 + 53087111 53088082 L1PA8A 6298 + 4557 5544 21954 79 0 5 59 1 0 322 0 7 12 0 1 447 14 18 37 chain 325911 chr10 133797422 + 53111289 53115307 L1P2 5180 + 2 4022 6284 141 0 11 93 1 0 250 2 3 8 1 0 7 1 0 122 8 4 146 1 0 6 1 0 140 0 25 539 11 18 692 0 2 491 0 3 247 38 0 1072 chain 50793 chr10 133797422 + 53199576 53200127 L1P1 4361 + 1682 2233 29285 551 chain 18553 chr10 133797422 + 53341793 53342029 L1P1 4361 + 4108 4341 58045 43 1 0 154 1 0 23 2 1 12 chain 12402 chr10 133797422 + 53354334 53356099 L1PB4 2604 + 1310 2474 66135 5 3 0 94 0 2 51 1550 950 62 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53855777 53855882 L1PA8 5853 + 5743 5847 74877 14 4 3 87 chain 27948 chr10 133797422 + 53882124 53882468 LTR14A 344 + 0 344 44953 153 3 0 5 7 9 99 0 1 77 chain 21974 chr10 133797422 + 53893462 53893937 L1PB1 5432 + 4981 5422 53873 33 0 2 35 1 0 52 16 14 21 8 6 12 2 0 3 2 0 9 3 1 50 1 0 12 6 5 45 6 5 10 1 0 4 19 8 18 2 0 6 1 0 7 0 3 5 11 6 17 1 0 23 1 0 8 1 0 14 2 0 7 chain 400266 chr10 133797422 + 53909536 53914770 L1PA6 6164 + 0 6162 5152 303 21 22 134 7 6 215 0 1 106 0 17 49 0 2 168 1 0 305 0 1 5 0 1 111 1 0 219 2 1059 363 0 2 51 0 9 119 13 169 91 2 0 477 0 3 271 1 0 88 0 4 509 0 1 167 0 1 26 3 21 7 3 0 30 1 0 4 0 1 31 338 0 983 0 1 9 chain 102522 chr10 133797422 + 53924083 53925537 LTR12C 1709 + 84 1709 18006 157 0 1 35 0 4 8 10 6 118 0 1 4 1 0 35 9 12 254 0 159 106 1 0 84 15 80 67 44 13 234 24 1 78 1 0 76 19 18 74 chain 466969 chr10 133797422 + 53967898 53973451 L1PA5 6144 + 0 6144 3930 120 0 14 19 3 15 723 0 1 157 0 1 119 9 0 802 2 1 305 0 4 32 5 1 231 9 583 41 1 0 33 2 1 455 0 1 33 0 1 974 0 2 88 1 0 482 1 0 144 1 0 761 chain 57820 chr10 133797422 + 53981389 53982032 L1PA4 6152 + 4710 5353 27014 643 chain 5298 chr10 133797422 + 53991656 53991751 LTR12C 1709 + 709 804 84204 40 2 17 7 15 0 31 chain 203805 chr10 133797422 + 54026704 54028948 L1PA3long 6157 + 3909 6157 9575 1379 0 4 865 chain 39907 chr10 133797422 + 54166675 54167126 LTR7 482 + 0 482 34732 249 1 32 201 chain 301407 chr10 133797422 + 54167128 54170796 HERVH-int 3825 + 0 3825 6790 212 0 11 155 0 4 150 5 0 38 2 1 9 1 0 24 70 0 14 1 0 13 3 0 18 21 0 42 0 20 18 2 1 49 1 0 444 15 0 462 5 32 281 0 4 1118 8 218 487 chain 38588 chr10 133797422 + 54172056 54172501 LTR7 482 + 0 482 35650 225 0 1 28 1 31 183 0 6 8 chain 79451 chr10 133797422 + 54178690 54179579 L1PA3long 6157 + 5265 6157 21753 45 0 4 510 6 5 328 chain 3837 chr10 133797422 + 54208374 54208423 MLT1A0 366 + 28 77 92584 49 chain 494592 chr10 133797422 + 54288404 54294462 L1PA6 6164 + 4 6153 3296 90 0 1 12 0 6 453 2 1 32 0 1 187 0 17 122 23 0 4 1 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55377762 55378209 L1PA7 6471 + 6010 6461 36922 13 0 5 296 1 0 137 chain 3756 chr10 133797422 + 55439562 55439644 MADE1 96 - 2 96 93163 27 25 37 30 chain 101650 chr10 133797422 + 55443031 55444294 L1PA7 6471 + 5201 6470 18109 152 0 1 121 0 1 81 0 8 57 11 8 76 1 0 764 chain 37983 chr10 133797422 + 55518373 55518812 LTR19B 566 + 2 440 36087 43 1 0 395 chain 83658 chr10 133797422 + 55589189 55590472 L1PA3long 6157 + 4856 6157 20881 220 0 16 214 0 1 700 0 1 149 chain 544683 chr10 133797422 + 55601877 55607908 L1PA3long 6157 + 0 6157 1045 130 1 3 20 1 0 4 0 2 609 8 136 550 6 0 2739 0 1 1963 chain 41739 chr10 133797422 + 55652530 55653043 MER9a3 513 + 0 513 33526 87 6 7 328 1 0 91 chain 18406 chr10 133797422 + 55757034 55757256 L1PA6 6164 + 5937 6160 58233 180 3 4 39 chain 176682 chr10 133797422 + 55773790 55775800 L1PA5 6144 + 4132 6142 10743 490 1 0 246 0 4 821 5 5 83 2 0 104 1 0 257 chain 80096 chr10 133797422 + 55794147 55795164 L1PA7 6471 + 5451 6467 21607 166 8 11 82 0 1 74 8 9 255 2 1 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133797422 + 56063800 56063846 MADE1 96 + 50 96 90726 46 chain 18456 chr10 133797422 + 56064955 56065303 THE1B 368 + 0 368 58157 33 7 22 101 21 18 11 48 48 73 5 13 49 chain 176642 chr10 133797422 + 56087861 56090289 L1PA8 5853 + 3479 5853 10745 109 1 0 6 0 1 125 5 6 489 9 1 44 9 0 110 15 14 26 25 16 550 0 1 29 6 1 349 0 1 177 0 1 29 1 0 18 0 4 22 2 0 55 75 50 30 1 0 17 0 3 8 4 0 82 chain 3604 chr10 133797422 + 56097809 56097850 L1P2 5180 + 2148 2189 94388 41 chain 5009 chr10 133797422 + 56111006 56111101 MSTA 426 + 71 189 85612 29 26 49 40 chain 208964 chr10 133797422 + 56129025 56132112 L1PA8 5853 + 3084 5853 9383 114 36 20 120 0 9 42 9 6 503 310 0 969 0 1 31 0 1 13 15 16 81 0 2 72 0 2 182 0 1 295 1 0 44 2 0 71 1 0 5 5 4 11 2 3 38 2 1 18 6 5 89 chain 50706 chr10 133797422 + 56144415 56145020 L1PA5 6144 + 5536 6142 29312 379 0 2 74 4 6 8 3 0 137 chain 125638 chr10 133797422 + 56154939 56156388 LTR12C 1709 + 0 1709 14606 579 1 0 99 0 159 275 1 0 5 3 1 106 0 4 212 0 101 168 chain 538929 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53639 26 0 1 85 1 0 13 4 11 57 1 0 14 0 4 7 4 0 7 2 1 49 6 3 46 3 1 10 17 11 18 1 0 9 chain 492882 chr10 133797422 + 58675868 58689033 L1PA7 6471 + 31 6464 3347 196 21 32 145 1 2 235 2 76 22 0 1 42 0 4 199 2 0 553 1 0 17 2 3 167 6 11 299 1 0 17 1 3 76 0 1 31 0 4 246 8 4 223 0 1 65 0 4 23 0 5 92 0 1 28 0 1 366 0 1 910 2 0 180 0 2 46 9 12 53 0 8 102 11 1 85 0 4 40 0 8 306 0 1 48 0 1 435 0 5 126 19 29 37 0 1 36 0 1 65 0 4 167 6878 0 260 0 1 263 chain 5737 chr10 133797422 + 58713961 58714066 MER20 218 + 36 142 82192 4 1 0 27 13 16 5 1 0 54 chain 3467 chr10 133797422 + 58850586 58850627 L1MC1 2226 + 1353 1394 95475 41 chain 3135 chr10 133797422 + 58852027 58852085 L1MC1 2226 + 2068 2119 98496 15 5 0 20 3 1 15 chain 3260 chr10 133797422 + 58970058 58970094 MLT1D 503 + 272 308 97375 36 chain 6114 chr10 133797422 + 58996333 58996442 L1MB2 1706 + 1592 1694 80683 6 1 0 13 1 0 9 1 2 35 7 1 36 chain 23804 chr10 133797422 + 59066127 59066446 THE1B 368 + 0 368 51101 45 0 52 75 2 1 27 2 0 168 chain 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225 631 chain 15621 chr10 133797422 + 59741116 59741353 Tigger3b 1229 + 745 979 61504 25 9 6 74 11 0 10 1 12 107 chain 122875 chr10 133797422 + 59743695 59745125 SVA_B 1603 + 52 1603 15041 230 0 1 430 0 1 62 0 80 40 1 2 50 5 6 20 1 0 2 0 38 589 chain 2857 chr10 133797422 + 59753689 59753721 L1PA6 6164 + 5973 6005 101163 32 chain 12716 chr10 133797422 + 59753725 59753876 L1PA6 6164 + 6005 6156 65589 151 chain 42189 chr10 133797422 + 59759944 59760454 MER9a1 513 + 0 512 33255 74 10 12 426 chain 50139 chr10 133797422 + 59784384 59784927 L1PA2 6032 + 5487 6030 29508 543 chain 6586 chr10 133797422 + 59867104 59867195 LTR32 486 + 21 113 79027 33 1 2 57 chain 19181 chr10 133797422 + 59967549 59967749 AluYb8 318 + 113 313 57368 200 chain 10898 chr10 133797422 + 60002196 60002325 L1PA16 3655 + 3431 3560 68702 129 chain 23200 chr10 133797422 + 60015662 60016057 LOR1b 457 + 47 457 52080 34 2 0 63 1 0 21 1 5 12 0 1 5 21 30 44 38 42 153 chain 39258 chr10 133797422 + 60155552 60156097 MLT2A2 560 + 0 560 35177 116 0 1 32 0 1 33 1 0 13 13 12 55 0 1 133 5 16 35 0 3 39 0 1 8 1 0 6 0 1 6 1 0 48 chain 227600 chr10 133797422 + 60328508 60331274 L1PA7 6471 + 3677 6468 8824 194 10 19 107 3 0 490 0 1 337 2 0 609 0 4 183 0 10 69 2 3 56 1 6 438 1 0 87 33 34 144 chain 21209 chr10 133797422 + 60364411 60364698 L1PA7 6471 + 6178 6466 54871 129 0 7 7 15 8 57 1 2 78 chain 4387 chr10 133797422 + 60418687 60418770 MER53 195 - 89 168 88955 22 21 17 40 chain 17178 chr10 133797422 + 60431574 60431805 L1PA7 6471 + 6237 6465 59598 70 9 8 144 2 0 6 chain 25792 chr10 133797422 + 60435817 60436118 AluYd8 298 + 0 286 48028 158 1 0 94 1 0 26 13 0 8 chain 27916 chr10 133797422 + 60524339 60524705 THE1B 368 + 0 368 45008 13 2 0 22 5 10 127 2 1 195 chain 38694 chr10 133797422 + 60581829 60582275 L1PA7 6471 + 6020 6464 35564 6 2 0 438 chain 53275 chr10 133797422 + 60634381 60635053 LTR12_ 688 + 0 688 28474 24 1 0 63 17 34 21 0 1 328 1 0 217 chain 243365 chr10 133797422 + 60640128 60642788 L1PA3long 6157 + 3484 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61856162 61856441 AluY 311 + 18 299 51140 114 0 1 144 0 1 21 chain 136325 chr10 133797422 + 61867461 61869125 LTR12C 1709 + 0 1709 13408 428 8 9 169 0 1 146 0 2 42 0 40 274 1 0 6 2 0 75 32 36 212 0 1 186 1 0 82 chain 3941 chr10 133797422 + 61926947 61927015 MADE1 96 - 12 96 91823 26 5 21 37 chain 21053 chr10 133797422 + 61954752 61955019 AluSp 311 + 20 295 55059 19 10 18 238 chain 5217 chr10 133797422 + 61985212 61985293 MADE1 96 + 0 96 84597 33 7 23 28 1 0 12 chain 6616 chr10 133797422 + 61985474 61985613 L1MB8 1703 + 1513 1628 78912 71 43 18 20 0 1 5 chain 15300 chr10 133797422 + 62128691 62128891 L1MB7 1623 + 396 597 61915 103 1 2 96 chain 42226 chr10 133797422 + 62142635 62143412 L1PREC2 3366 + 2297 3034 33232 208 0 1 246 2 0 47 144 123 23 47 30 35 2 1 23 chain 133961 chr10 133797422 + 62280193 62281803 LTR12C 1709 + 0 1709 13661 102 7 6 716 4 85 202 1 0 6 2 0 107 0 4 220 0 17 17 0 1 226 chain 25951 chr10 133797422 + 62301111 62301480 THE1C 375 + 0 375 47792 19 0 1 105 3 0 55 0 1 9 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133797422 + 63022372 63022919 MER41A 554 + 0 552 31475 73 0 1 352 0 3 25 0 1 97 chain 132261 chr10 133797422 + 63033405 63034954 LTR12C 1709 + 0 1709 13799 708 0 159 245 1 0 4 4 2 100 6 10 23 1 0 220 0 1 237 chain 51879 chr10 133797422 + 63082204 63082975 L1PB1 5432 + 4548 5311 28916 41 0 1 31 0 1 182 0 3 291 5 4 12 5 0 24 1 0 4 3 2 14 7 3 7 2 0 52 2 1 16 4 3 18 4 11 11 1 0 16 1 0 4 2 0 11 chain 40021 chr10 133797422 + 63101043 63101573 LTR10F 562 + 0 562 34641 100 0 1 96 7 0 21 0 14 9 0 24 77 6 5 58 1 0 111 0 1 20 1 2 23 chain 3306 chr10 133797422 + 63206073 63206113 MER2 342 + 283 322 96956 19 1 0 20 chain 2998 chr10 133797422 + 63218733 63218773 L1MC5 759 + 682 719 99845 29 3 0 8 chain 3421 chr10 133797422 + 63229361 63229399 MER66B 489 + 295 333 95897 38 chain 5254 chr10 133797422 + 63247871 63247946 L1MA4 2864 + 317 411 84422 49 1 20 25 chain 5843 chr10 133797422 + 63249355 63249576 L1MA4 2864 + 2655 2834 81721 16 3 0 12 72 44 10 5 0 25 9 7 40 12 8 17 chain 17696 chr10 133797422 + 63301532 63301817 L1PA8 5853 + 5566 5853 59012 43 3 1 69 1 0 14 5 7 39 9 6 15 1 12 24 4 0 51 1 0 6 chain 25295 chr10 133797422 + 63348826 63349126 AluSx1 309 + 8 308 48791 300 chain 16090 chr10 133797422 + 63497184 63497463 L1MB8 1703 + 1264 1577 60904 24 11 13 78 16 26 18 7 10 28 10 29 87 chain 26195 chr10 133797422 + 63513180 63513547 L1PA16 3655 + 2465 2830 47432 107 0 1 98 24 21 138 chain 13824 chr10 133797422 + 63610367 63610577 L1PA8 5853 + 5647 5853 63839 23 10 9 14 1 0 46 3 2 19 1 0 93 chain 22647 chr10 133797422 + 63654576 63654912 THE1C 375 + 0 336 52914 62 19 5 10 18 32 4 0 1 47 1 0 175 chain 125623 chr10 133797422 + 63693066 63694612 THE1B-int 1605 + 30 1605 14609 137 0 1 44 5 6 212 1 26 561 1 3 585 chain 4135 chr10 133797422 + 63724123 63724171 L1M2a1 1281 + 1018 1066 90543 48 chain 24112 chr10 133797422 + 63746271 63746567 AluSg7 307 + 3 297 50629 128 0 1 87 1 0 71 2 0 7 chain 54531 chr10 133797422 + 63766091 63766831 MER4E 760 + 0 760 28037 24 1 0 127 0 9 12 6 0 195 3 5 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164 1 0 460 1 129 1791 1 0 3459 chain 43306 chr10 133797422 + 64193840 64194327 L1PA7 6471 + 5976 6463 32562 487 chain 87273 chr10 133797422 + 64240635 64241678 MER11A 1151 + 0 1146 20178 294 1 0 32 0 2 100 0 1 162 0 101 113 2 1 56 3 0 211 0 4 69 chain 20542 chr10 133797422 + 64435661 64435925 AluY 311 + 39 304 55727 86 2 1 5 0 2 171 chain 37855 chr10 133797422 + 64453601 64454094 MER9a3 513 + 0 513 36172 18 0 2 157 0 1 80 0 17 23 1 0 136 0 1 10 2 0 8 1 3 57 chain 395035 chr10 133797422 + 64468930 64474539 L1PB1 5432 + 71 5420 5236 60 0 2 390 1 2 80 7 8 44 0 1 99 11 12 161 0 11 137 0 1 96 1 2 231 0 3 37 1 10 224 0 4 18 2 0 239 311 0 29 6 0 527 0 4 78 1 6 232 0 1 15 2 0 56 0 3 103 0 1 66 0 5 198 0 6 454 8 0 98 0 4 133 0 1 371 0 14 115 31 36 75 6 8 46 6 7 4 0 1 51 0 1 72 0 14 133 5 2 190 1 2 10 3 0 25 8 6 12 4 0 9 2 0 28 1 3 22 2 1 16 1 0 38 6 5 16 3 0 6 22 12 13 8 5 14 2 0 45 1 0 13 1 0 16 chain 46848 chr10 133797422 + 64511058 64511591 L1PA7 6471 + 5932 6466 30715 204 0 1 329 chain 12216 chr10 133797422 + 64515235 64515497 MER2 342 + 13 295 66447 14 50 63 16 6 5 31 15 23 59 2 0 5 0 2 64 chain 91380 chr10 133797422 + 64578219 64579283 L1PA5 6144 + 5081 6142 19439 4 1 0 631 3 0 94 0 1 331 chain 80787 chr10 133797422 + 64584477 64585577 L1PA10 4194 + 1703 2804 21475 142 0 1 97 10 4 123 8 18 105 0 2 429 1 2 31 8 0 72 3 4 71 chain 6841 chr10 133797422 + 64605303 64605402 L1MB5 1630 + 1330 1438 78167 50 4 13 45 chain 40433 chr10 133797422 + 64660223 64660657 L1PA2 6032 + 5595 6029 34359 434 chain 86550 chr10 133797422 + 64726801 64727860 MER11C 1089 + 0 1073 20312 246 0 9 51 0 2 5 2 4 359 1 0 61 0 1 148 0 1 186 chain 28638 chr10 133797422 + 64759605 64759960 L1PA7 6471 + 6112 6469 43888 24 0 1 171 14 15 146 chain 190986 chr10 133797422 + 64836999 64839082 L1PA3long 6157 + 2408 4492 10069 1538 0 1 545 chain 539071 chr10 133797422 + 64924296 64930258 L1PA3long 6157 + 53 6157 1397 99 0 1 109 0 9 497 8 136 31 0 4 5218 chain 36953 chr10 133797422 + 64966133 64966622 MER9a3 513 + 14 508 36771 86 10 11 147 19 0 16 3 21 139 0 1 17 0 4 52 chain 27425 chr10 133797422 + 64969617 64969947 L1PA7 6471 + 6139 6468 45668 182 1 0 147 chain 10042 chr10 133797422 + 65003807 65003918 L1PA2 6032 + 5921 6032 70326 111 chain 14132 chr10 133797422 + 65041855 65042028 L1PA7 6471 + 6189 6356 63402 124 1 0 4 5 0 39 chain 104985 chr10 133797422 + 65051718 65052931 SVA_C 1631 + 0 1629 17689 21 0 20 142 2 0 25 4 0 288 0 270 81 6 94 55 0 42 299 0 2 290 chain 28719 chr10 133797422 + 65092161 65092473 AluYa5 310 + 0 310 43759 97 1 0 26 1 0 187 chain 434709 chr10 133797422 + 65100645 65105710 L1PA5 6144 + 0 5964 4672 249 5 6 520 0 3 219 0 874 322 0 4 163 1 0 816 1 0 109 2 0 462 6 9 5 3 0 827 0 1 154 8 17 80 0 8 815 0 3 298 chain 41495 chr10 133797422 + 65106795 65107308 MER9a1 513 + 0 513 33676 59 0 1 188 4 3 262 chain 3716 chr10 133797422 + 65241475 65241518 L1MB8 1703 + 1533 1576 93490 43 chain 30799 chr10 133797422 + 65273566 65273937 MLT2A1 477 + 0 384 41309 61 0 9 72 0 1 25 1 5 150 1 0 61 chain 4410 chr10 133797422 + 65324397 65324448 MADE1 96 + 45 96 88844 51 chain 56976 chr10 133797422 + 65326737 65327500 MER4E 760 + 1 737 27274 16 0 1 104 9 11 228 4 0 118 0 4 45 3 0 5 28 1 203 chain 13429 chr10 133797422 + 65352305 65354224 MER4B 649 + 216 629 64418 70 25 24 21 1 0 30 1642 138 61 27 27 42 chain 14059 chr10 133797422 + 65357142 65357322 MER107 203 + 2 176 63505 160 7 0 8 0 1 5 chain 200845 chr10 133797422 + 65390365 65392588 L1PA3long 6157 + 3933 6156 9695 2223 chain 53209 chr10 133797422 + 65419994 65420743 MER4E 760 + 2 760 28498 17 3 0 130 45 48 64 0 2 102 0 16 67 1 0 79 15 8 79 1 0 146 chain 14044 chr10 133797422 + 65442298 65442607 L1PA13 3608 + 3258 3548 63527 15 2 0 60 2 1 13 1 0 15 2 1 28 8 5 47 11 7 17 1 0 21 12 16 14 1 0 6 7 1 9 1 0 4 2 0 10 chain 40743 chr10 133797422 + 65456409 65456871 L1PA4 6152 + 5681 6143 34125 462 chain 28614 chr10 133797422 + 65464352 65464913 L1PB1 5432 + 4933 5424 43928 170 1 2 11 66 26 4 1 0 12 15 9 69 1 0 45 1 0 15 3 0 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25 1 0 84 5 0 2 0 4 61 chain 21750 chr10 133797422 + 65670630 65670955 THE1B 368 + 0 368 54172 44 13 59 58 21 19 114 1 0 74 chain 4340 chr10 133797422 + 65773556 65773606 HSMAR2 1300 + 1250 1300 89232 50 chain 191811 chr10 133797422 + 65848784 65851498 L1PB1 5432 + 2778 5422 10031 64 1 0 165 6 8 62 0 4 161 9 7 107 0 1 379 9 1 289 1 0 45 6 7 438 0 5 44 8 6 43 10 7 177 2 0 77 0 1 60 1 0 167 1 2 11 42 1 21 0 3 5 5 0 10 17 16 47 7 6 12 6 5 36 6 5 13 22 12 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 chain 4221 chr10 133797422 + 65886503 65886548 MER4A1 472 + 417 462 90002 45 chain 17602 chr10 133797422 + 65942313 65942532 AluSc 308 + 67 284 59118 93 2 0 124 chain 10502 chr10 133797422 + 66048781 66048976 L1PA14 3548 + 3252 3436 69416 42 2 1 36 1 0 9 7 3 36 4 2 12 1 0 5 1 0 15 2 1 22 chain 2731 chr10 133797422 + 66205228 66205364 MER6B 211 + 30 181 102115 22 91 106 23 chain 2717 chr10 133797422 + 66219728 66219804 MLT1F 544 + 453 532 102200 11 4 6 12 21 22 28 chain 38018 chr10 133797422 + 66298862 66299331 MER4A1 472 + 3 472 36057 469 chain 33051 chr10 133797422 + 66365121 66365545 L1PA7 6471 + 6046 6469 39474 252 18 17 154 chain 18501 chr10 133797422 + 66380853 66381063 L1P1 4361 + 2431 2641 58101 210 chain 515072 chr10 133797422 + 66381963 66388092 L1PA6 6164 + 2 6152 2518 235 0 2 23 1 0 231 0 1 24 0 2 13 1 2 28 19 18 37 6 0 169 0 17 103 0 4 33 6 0 1381 0 1 128 0 6 723 1 2 4 0 1 849 3 0 609 1 0 185 0 1 481 0 2 835 chain 3048 chr10 133797422 + 66391673 66391709 LTR37B 484 + 260 296 99327 36 chain 11172 chr10 133797422 + 66404700 66404888 MER30 238 + 36 238 68300 21 10 5 43 8 0 10 8 33 40 0 2 48 chain 7813 chr10 133797422 + 66420851 66420963 L1MA4A 3247 + 3022 3132 75336 13 1 0 71 2 1 25 chain 370622 chr10 133797422 + 66427676 66431902 L1PA5 6144 + 1903 6138 5641 1597 0 1 158 0 1 928 0 1 682 0 4 23 0 4 589 1 0 141 1 0 106 chain 539489 chr10 133797422 + 66442673 66448837 L1PA4 6152 + 3 6151 1373 573 1 0 260 17 0 1276 1 0 23 1 3 220 0 2 326 2 1 473 14 14 1391 0 1 444 1 0 1141 chain 44009 chr10 133797422 + 66517256 66517811 MER41A 554 + 0 554 32123 169 1 0 385 chain 33361 chr10 133797422 + 66542190 66542565 L1PA5 6144 + 5435 5810 39206 375 chain 29702 chr10 133797422 + 66542566 66542892 L1PA5 6144 + 5812 6138 42364 326 chain 178154 chr10 133797422 + 66617323 66619286 L1PA3long 6157 + 3756 5722 10670 60 0 1 744 0 1 344 0 1 815 chain 309212 chr10 133797422 + 66690979 66694606 L1P1 4361 + 5 3626 6628 568 1 0 129 12 5 326 8 7 209 21 21 75 0 1 850 0 2 1428 chain 11689 chr10 133797422 + 66729132 66729447 L1PA11 4918 + 4340 4629 67414 8 0 7 38 2 1 13 2 0 67 2 0 14 0 2 18 4 0 9 48 38 12 60 44 18 chain 15192 chr10 133797422 + 66729496 66729783 L1PB1 5432 + 5162 5423 62051 6 2 0 52 2 1 15 1 0 45 1 0 15 2 0 6 15 6 19 8 5 14 2 0 24 2 0 21 1 0 13 1 0 14 1 0 5 chain 93363 chr10 133797422 + 66741645 66742713 MER11C 1089 + 2 1073 19137 597 0 1 353 1 3 117 chain 3977 chr10 133797422 + 66808606 66808815 Tigger7 736 + 92 317 91596 28 144 160 37 chain 4452 chr10 133797422 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320 3 32 0 1 95 0 4 56 0 4 284 1 0 135 2 23 235 8 7 22 1 8 48 318 13 84 0 1 126 0 1 56 0 3 385 0 1 314 0 1 137 6 0 82 0 3 4 0 1 544 7 28 47 0 9 111 4 5 62 2 0 46 chain 540320 chr10 133797422 + 67230669 67236670 L1PA3long 6157 + 6 6156 1321 28 0 1 118 0 1 622 0 128 243 0 14 845 0 1 1459 1 0 480 0 1 1357 0 4 848 chain 26792 chr10 133797422 + 67236689 67237527 L1PB1 5432 + 4674 5424 5380 43 0 3 88 1 0 4 5 3 159 1 0 126 66 14 24 1 0 9 16 11 9 2 0 53 1 2 4 2 0 11 1 0 42 2 1 16 1 0 4 23 9 15 29 24 18 8 7 18 5 4 9 1 0 16 1 0 4 chain 10552 chr10 133797422 + 67248834 67248959 MER85 139 + 4 139 69319 85 0 10 40 chain 33236 chr10 133797422 + 67301287 67302440 L1MA8 2339 + 1588 2264 39311 19 9 0 29 22 20 30 0 1 153 4 0 70 0 4 18 481 58 19 1 0 19 1 0 58 65 33 37 7 4 9 0 1 26 6 0 9 33 32 20 1 0 7 chain 9753 chr10 133797422 + 67305270 67305376 L1HS 6032 + 5925 6031 70922 106 chain 245441 chr10 133797422 + 67363413 67366365 L1PA6 6164 + 3108 6162 8342 66 10 0 54 1 0 57 0 1 18 7 0 303 1 0 13 1 0 36 0 1 346 0 3 50 0 1 138 1 97 132 0 2 1391 0 20 155 2 0 161 0 1 4 1 0 4 chain 108463 chr10 133797422 + 67372394 67373619 L1P1 4361 + 1398 2625 17256 714 1 3 144 0 1 54 1 0 311 chain 540058 chr10 133797422 + 67387044 67393066 L1PA3long 6157 + 1 6157 1338 7 3 0 144 0 1 215 1 0 399 11 139 1684 0 2 313 0 1 358 0 4 974 0 1 296 0 1 1617 chain 24479 chr10 133797422 + 67396691 67397054 THE1C 375 + 0 375 50065 114 0 1 10 8 5 55 11 12 14 8 20 16 0 1 6 0 1 95 1 0 25 chain 122231 chr10 133797422 + 67397054 67398639 THE1C-int 1605 + 0 1605 15157 14 2 1 430 0 7 48 7 2 9 0 5 56 0 2 7 0 1 90 0 1 4 1 0 305 7 8 108 16 23 150 0 3 331 chain 27232 chr10 133797422 + 67398639 67399006 THE1C 375 + 0 364 45926 44 0 1 33 1 0 38 18 15 144 1 2 72 1 0 15 chain 26311 chr10 133797422 + 67401972 67402399 L1P4a 3072 + 38 451 47250 9 1 0 21 2 0 52 1 0 126 9 0 28 45 44 133 chain 8962 chr10 133797422 + 67407941 67410005 L1PA11 4918 + 3370 4629 72647 91 1744 973 41 2 0 13 5 4 16 4 0 11 29 20 10 8 6 12 2 0 11 47 33 18 chain 29724 chr10 133797422 + 67426480 67426813 L1PA6 6164 + 5829 6162 42336 333 chain 28945 chr10 133797422 + 67428587 67429008 MLT2A1 477 + 0 477 43414 142 0 1 20 6 10 37 7 5 121 0 10 34 8 48 30 1 0 9 0 4 6 chain 153343 chr10 133797422 + 67435322 67437459 L1PB1 5432 + 3303 5420 12156 93 9 18 68 24 23 107 0 2 115 1 3 572 0 1 75 0 1 235 8 5 373 3 4 103 10 9 15 39 33 9 2 0 53 2 1 16 1 0 44 1 0 14 25 13 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 28605 chr10 133797422 + 67469432 67469769 L1PA7 6471 + 6135 6470 43943 73 2 0 262 chain 5799 chr10 133797422 + 67473751 67473845 MER2 342 + 143 236 81922 33 0 1 32 10 8 19 chain 17909 chr10 133797422 + 67473845 67474096 LTR24 460 + 0 242 58747 94 2 0 20 1 0 15 6 0 113 chain 76268 chr10 133797422 + 67482925 67483768 L1PA3long 6157 + 5305 6157 22494 639 1 10 203 chain 5544 chr10 133797422 + 67526907 67526975 HSMAR2 1300 + 210 278 83056 68 chain 29383 chr10 133797422 + 67529803 67530171 THE1B 368 + 0 368 42761 171 1 0 73 0 1 123 chain 117979 chr10 133797422 + 67530171 67531738 THE1B-int 1605 + 0 1594 15889 35 0 2 265 0 1 127 1 26 19 5 6 300 16 16 10 12 13 165 4 5 94 19 15 495 chain 518651 chr10 133797422 + 67558507 67564644 L1PA5 6144 + 3 6135 2332 112 19 5 15 12 26 17 0 1 381 10 9 128 7 0 452 0 3 1835 0 1 186 1 0 700 0 1 957 2 0 1303 chain 101061 chr10 133797422 + 67566074 67567181 L1PA3long 6157 + 5049 6157 18180 334 0 1 773 chain 2873 chr10 133797422 + 67600500 67600665 L1ME3A 1206 + 658 832 101063 16 2 0 3 3 0 15 88 105 11 5 2 22 chain 84588 chr10 133797422 + 67633729 67636665 L1PA11 4918 + 419 4016 8217 467 0 1 171 0 1 105 7 9 182 1 0 123 19 21 53 15 31 146 1 637 4 0 1 176 2 0 47 5 6 27 0 1 62 0 3 20 9 8 309 0 3 70 0 2 75 1 0 88 2 1 391 2 0 356 chain 385749 chr10 133797422 + 67636668 67641051 L1PA4 6152 + 790 5186 5387 1172 0 1 471 0 5 508 0 1 313 0 3 887 0 3 1032 chain 11467 chr10 133797422 + 67642031 67642429 L1PA11 4918 + 4016 4415 8217 315 4 6 58 1 0 20 chain 164518 chr10 133797422 + 67690857 67692754 SVA_D 2077 + 6 2077 11455 18 7 1 699 0 3 34 3 0 126 0 183 187 53 0 95 0 49 43 0 1 632 chain 4750 chr10 133797422 + 67691931 67691984 SVA_D 2077 + 1429 1482 43026 53 chain 554592 chr10 133797422 + 67699638 67705788 L1PA3long 6157 + 4 6157 438 704 1 0 164 0 1 590 0 1 1712 0 1 517 0 1 2462 chain 22668 chr10 133797422 + 67710872 67711211 THE1B 368 + 0 366 52869 44 0 15 113 1 0 20 40 52 26 0 1 95 chain 105712 chr10 133797422 + 67712660 67713951 L1PA8 5853 + 4570 5853 17597 47 0 1 226 1 2 164 2 0 505 1 0 49 1 0 44 2 0 67 7 6 12 1 0 51 1 0 16 1 0 93 chain 59316 chr10 133797422 + 67713963 67714704 THE1B-int 1605 + 870 1605 26563 62 3 0 186 6 2 52 6 7 426 chain 396038 chr10 133797422 + 67738204 67744852 L1PA4 6152 + 773 5340 5212 186 22 0 271 9 6 544 0 12 49 2076 0 478 0 1 129 4 3 194 1 7 1029 1 2 1547 0 1 108 chain 181065 chr10 133797422 + 67739302 67741319 L1PA3long 6157 + 4140 6157 10545 2017 chain 284064 chr10 133797422 + 67747385 67753050 L1PA10 4194 + 242 4161 7318 8 1 0 20 3 1 16 1 0 7 56 30 11 2 0 21 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34828 200 4 0 63 2 0 191 329 10 8 4 0 6 3 0 14 8 8 30 chain 4494 chr10 133797422 + 67832921 67833023 L1MC4a 1092 + 701 797 88369 4 1 0 15 13 5 33 10 13 26 chain 28301 chr10 133797422 + 67836006 67836364 L1PA8 5853 + 5502 5853 44410 62 1 0 46 2 0 72 1 0 11 1 0 47 2 1 19 1 0 93 chain 24725 chr10 133797422 + 67864760 67865154 LTR39 781 + 169 613 49683 11 4 3 20 1 0 129 2 6 48 21 78 4 1 0 33 8 0 112 chain 3776 chr10 133797422 + 67868755 67868893 Charlie2a 992 + 638 762 93020 37 1 0 5 45 47 13 12 0 17 3 0 5 chain 11573 chr10 133797422 + 67946397 67946617 L1M1 2793 + 2442 2673 67619 39 8 10 49 28 37 13 1 2 16 0 1 4 1 0 16 1 0 44 chain 20952 chr10 133797422 + 67983145 67983481 L1MA2 4263 + 3683 4017 55189 21 7 10 95 3 0 131 32 30 47 chain 6819 chr10 133797422 + 68012836 68012972 Tigger1 2417 + 154 253 78248 61 38 1 37 chain 25200 chr10 133797422 + 68092208 68092514 AluSq10 312 + 0 302 48949 45 5 1 256 chain 18021 chr10 133797422 + 68198738 68198974 L1PA8A 6298 + 6052 6290 58632 104 11 16 12 1 0 3 2 0 103 chain 8995 chr10 133797422 + 68218874 68219014 Tigger1 2417 + 2220 2387 72568 36 1 0 39 0 5 31 1 0 6 1 2 18 0 23 7 chain 17167 chr10 133797422 + 68272852 68273095 MER4B 649 + 0 297 59609 59 0 1 55 10 17 25 0 42 18 0 2 27 0 1 18 0 1 31 chain 10901 chr10 133797422 + 68273095 68273242 L1PA8 5853 + 5698 5847 68696 42 2 1 17 1 4 85 chain 122734 chr10 133797422 + 68277094 68278660 THE1B-int 1605 + 0 1592 15074 15 0 2 110 0 1 304 10 35 207 1 2 579 0 1 83 8 4 249 chain 82448 chr10 133797422 + 68279317 68280258 SVA_C 1631 + 348 1608 21142 119 0 113 217 0 82 31 1 0 45 3 127 217 0 1 308 chain 24046 chr10 133797422 + 68290439 68290729 AluSp 311 + 4 295 50735 265 0 1 25 chain 23846 chr10 133797422 + 68368388 68368663 AluSp 311 + 11 286 51027 275 chain 28965 chr10 133797422 + 68512355 68512664 AluYa5 310 + 0 307 43386 123 2 0 184 chain 72850 chr10 133797422 + 68525671 68526636 LTR5_Hs 974 + 0 974 23345 168 8 11 110 0 1 177 0 1 184 8 7 160 8 15 19 20 18 103 chain 22784 chr10 133797422 + 68613665 68613955 AluSq10 312 + 11 300 52693 8 0 1 12 1 0 87 1 0 4 1 2 4 1 0 171 chain 49730 chr10 133797422 + 68719963 68720874 L1PA5 6144 + 5543 6142 29668 294 3 0 14 305 0 59 0 2 223 6 0 7 chain 4470 chr10 133797422 + 68839101 68839226 L1M3 994 + 323 436 88489 45 53 42 16 1 0 10 chain 6129 chr10 133797422 + 68846815 68846890 U6 107 + 11 86 80614 75 chain 2947 chr10 133797422 + 68889300 68889331 U2 167 + 0 31 100414 31 chain 25017 chr10 133797422 + 68963826 68964125 AluY 311 + 8 309 49248 118 0 1 109 0 1 72 chain 2377 chr10 133797422 + 68972702 68972782 MER33 330 + 12 98 104238 17 4 12 17 28 26 14 chain 26865 chr10 133797422 + 69055026 69055315 L1PA2 6032 + 5743 6032 46450 289 chain 6289 chr10 133797422 + 69168240 69168335 MER20 218 + 93 189 80035 51 13 14 31 chain 34136 chr10 133797422 + 69175371 69175898 LTR12F 595 + 0 595 38607 25 0 1 77 0 1 21 8 10 11 2 0 30 18 9 16 0 33 52 0 64 7 2 1 28 20 2 71 3 0 136 chain 25384 chr10 133797422 + 69511784 69512094 L1PA7 6471 + 6154 6465 48644 175 1 2 134 chain 10785 chr10 133797422 + 69521019 69521159 MLT2B2 565 + 0 141 68889 94 3 4 43 chain 123008 chr10 133797422 + 69531879 69533640 L1PB1 5432 + 3686 5408 15023 27 0 1 11 31 0 24 12 15 186 19 26 527 0 1 122 3 0 38 0 3 86 11 12 197 0 12 129 1 2 11 11 7 15 1 0 8 1 0 12 15 9 53 2 1 16 1 0 44 1 0 10 8 5 11 14 6 14 3 1 4 1 0 16 2 0 22 1 0 21 1 0 13 1 0 4 chain 2879 chr10 133797422 + 69535493 69535526 L1MC5 759 + 246 279 101007 33 chain 5948 chr10 133797422 + 69541273 69541356 THE1-int 844 + 743 822 81289 8 1 0 21 2 0 34 1 0 16 chain 19556 chr10 133797422 + 69549157 69549580 LTR47A 437 + 0 424 56948 62 7 8 35 18 40 16 76 50 5 0 2 35 16 12 20 11 17 122 chain 22472 chr10 133797422 + 69586910 69587297 THE1D 372 + 0 372 53158 13 0 2 17 1 0 23 65 47 80 9 11 32 1 0 82 0 1 64 chain 8696 chr10 133797422 + 69607476 69607584 MSTA 426 + 318 426 73222 108 chain 6967 chr10 133797422 + 69612078 69612199 L1MC3 1789 + 274 386 77720 15 7 1 12 10 7 77 chain 3716 chr10 133797422 + 69653247 69653287 MER52D 1964 + 1167 1207 93495 40 chain 108412 chr10 133797422 + 69670605 69671881 L1PA7 6471 + 5138 6461 17262 215 0 1 235 10 48 108 2 10 706 chain 23840 chr10 133797422 + 69690806 69691226 MSTB 430 + 0 429 51039 98 6 7 99 1 0 6 60 68 17 0 1 12 17 17 104 chain 49640 chr10 133797422 + 69698255 69698820 L1PA6 6164 + 5588 6153 29703 565 chain 32838 chr10 133797422 + 69705788 69706239 MER4A1 472 + 0 472 39638 13 2 0 164 0 1 57 1 2 10 21 42 183 chain 3788 chr10 133797422 + 69740436 69740500 MIR3 191 + 50 118 92930 10 1 0 4 2 7 47 chain 3281 chr10 133797422 + 69832492 69832530 tRNA-Trp-TGG 72 + 0 38 97177 38 chain 245408 chr10 133797422 + 70022154 70026033 L1PB1 5432 + 1933 5422 8343 42 1 0 521 3 0 98 1 0 4 0 1 19 310 0 148 1 0 4 6 9 41 2 1 13 0 1 172 2 0 3 4 0 4 0 1 65 22 6 177 2 1 209 0 1 228 6 30 88 0 4 67 5 6 388 0 1 15 0 1 4 1 0 7 0 2 171 6 8 52 1 0 20 25 0 14 11 7 127 12 10 126 3 12 96 0 14 130 52 19 13 1 0 12 1 0 10 2 0 3 2 0 9 2 0 51 1 0 17 1 0 45 1 0 10 29 17 10 17 9 5 1 0 14 2 0 24 14 0 22 1 0 12 1 0 8 0 1 9 chain 77681 chr10 133797422 + 70041381 70042432 MER11C 1089 + 0 1063 22166 246 0 9 62 0 4 65 1 0 149 73 69 86 6 9 38 0 1 127 0 1 54 1 0 143 chain 45870 chr10 133797422 + 70047058 70047577 L1PA5 6144 + 5615 6134 31119 519 chain 19283 chr10 133797422 + 70074527 70074885 THE1B 368 + 4 368 57256 104 17 18 43 68 74 61 2 0 6 1 2 56 chain 7430 chr10 133797422 + 70081803 70081945 L1MA3 4352 + 4168 4308 76307 11 1 0 69 19 20 14 1 0 5 2 1 20 chain 5443 chr10 133797422 + 70125786 70125877 LTR29 598 + 422 511 83491 32 11 11 29 2 0 17 chain 16330 chr10 133797422 + 70163271 70163521 Tigger1 2417 + 885 1159 60598 30 5 27 8 4 0 51 6 10 94 1 3 51 chain 25676 chr10 133797422 + 70165019 70165289 AluYa5 310 + 36 306 48208 270 chain 3111 chr10 133797422 + 70222560 70222596 tRNA-Gly-GGY 63 + 0 36 98697 36 chain 4330 chr10 133797422 + 70241915 70241969 L1MB3 1562 + 1258 1312 89287 54 chain 88441 chr10 133797422 + 70257190 70258221 LTR5A 1029 + 0 1029 19955 150 1 0 812 1 0 67 chain 3329 chr10 133797422 + 70288318 70288354 MLT1B 390 + 347 383 96776 36 chain 8438 chr10 133797422 + 70366793 70366897 MER2 342 + 147 251 73824 104 chain 9437 chr10 133797422 + 70621157 70621275 MER57B2 428 + 1 119 71623 118 chain 25492 chr10 133797422 + 70624964 70625276 AluSp 311 + 1 306 48497 17 1 5 274 11 0 9 chain 134370 chr10 133797422 + 70630467 70632007 SVA_D 2077 + 76 2077 13611 764 0 309 39 0 1 8 7 93 24 0 1 10 9 70 6 4 0 11 0 1 266 0 2 295 0 4 97 chain 7725 chr10 133797422 + 70646872 70647059 L1PB1 5432 + 5254 5422 75549 26 1 0 16 1 0 4 2 0 10 8 0 16 3 1 5 1 0 14 3 1 11 1 2 10 5 7 5 3 0 9 1 0 13 1 0 18 chain 57235 chr10 133797422 + 70659475 70660222 Tigger1 2417 + 1624 2381 27186 92 1 0 92 1 0 354 0 1 93 1 0 28 11 23 74 chain 74970 chr10 133797422 + 70667726 70668680 MER11B 1079 + 0 943 22847 259 3 0 304 34 32 177 6 0 171 chain 3525 chr10 133797422 + 70723953 70724082 MIRb 242 + 77 220 95064 28 46 47 15 18 31 22 chain 3242 chr10 133797422 + 70843855 70843933 MER58B 340 + 121 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chain 19862 chr10 133797422 + 71870595 71870835 AluSx4 309 + 27 267 56593 240 chain 3037 chr10 133797422 + 71897499 71897537 MSTB 430 + 7 47 99445 14 0 2 24 chain 22086 chr10 133797422 + 71904556 71904813 AluY 311 + 41 299 53719 91 0 1 166 chain 22252 chr10 133797422 + 71930318 71930592 AluSq10 312 + 26 298 53474 149 10 8 115 chain 176420 chr10 133797422 + 71941684 71943809 Harlequin-int 5206 + 143 2250 10755 8 5 0 137 1 0 6 6 0 12 1 0 176 6 1 199 1 0 498 0 1 247 2 0 101 0 2 95 0 1 295 0 1 13 2 0 314 chain 41154 chr10 133797422 + 71955188 71955757 LTR14B 630 + 23 630 33872 62 0 1 77 1 0 99 0 11 21 0 25 28 7 8 35 0 9 25 18 10 196 chain 78621 chr10 133797422 + 71955958 71956922 LTR13_ 950 + 0 950 21953 52 1 0 554 11 0 46 13 11 287 chain 114736 chr10 133797422 + 71957246 71958924 HERVK14-int 1672 + 8 1659 16421 22 1 0 10 1 0 24 0 1 25 1 0 132 0 1 77 51 48 65 27 20 5 0 3 127 1 0 47 1 0 11 2 0 193 1 0 133 3 2 10 1 2 9 1 0 7 1 0 79 14 10 33 2 1 203 1 0 108 1 0 37 7 6 20 1 0 20 23 20 140 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73394854 L1PA5 6144 + 3235 6128 8032 14 1 0 5 0 1 427 1 0 816 6 0 796 1 0 516 0 1 317 chain 107877 chr10 133797422 + 73408837 73410459 L1PB3 3668 + 1511 3149 17343 96 0 3 41 0 1 4 10 11 57 5 8 119 11 13 97 0 3 150 12 0 87 1 5 165 7 8 29 0 1 35 0 1 200 0 3 19 17 16 16 6 7 42 24 29 211 5 7 11 20 19 32 0 3 22 18 12 35 0 2 18 chain 29313 chr10 133797422 + 73417849 73418160 AluYa5 310 + 0 310 42870 97 1 0 213 chain 3525 chr10 133797422 + 73521297 73521335 tRNA-Ile-ATA 38 + 0 38 95068 38 chain 129935 chr10 133797422 + 73547376 73548873 L1PA6 6164 + 4647 6154 14047 254 0 1 124 6 7 282 0 1 260 0 1 255 1 2 252 0 5 63 chain 7755 chr10 133797422 + 73580885 73580982 Tigger3a 397 + 206 303 75477 97 chain 2977 chr10 133797422 + 73636386 73636445 MER53 195 + 0 61 100077 23 1 2 11 5 6 19 chain 16240 chr10 133797422 + 73686693 73687111 L1PB1 5432 + 5039 5418 60703 64 0 3 5 84 62 27 0 1 16 20 20 43 1 0 16 1 0 4 19 8 19 2 0 5 7 6 8 2 0 24 1 0 21 1 0 13 2 1 13 chain 142434 chr10 133797422 + 73689013 73690624 SVA_D 2077 + 61 2077 12897 434 1 0 230 0 3 33 3 0 143 0 182 95 0 225 38 0 1 384 1 0 230 1 0 18 chain 17491 chr10 133797422 + 73737670 73737892 LTR12C 1709 + 1254 1709 59251 172 0 233 50 chain 10798 chr10 133797422 + 73753897 73754073 MER30 238 + 38 238 68865 73 23 44 41 7 10 32 chain 4549 chr10 133797422 + 73754073 73754122 MER2 342 + 164 213 88064 49 chain 15221 chr10 133797422 + 73939136 73939406 MER4B 649 + 386 641 62016 23 35 21 134 1 0 4 11 12 53 1 0 8 chain 9640 chr10 133797422 + 73945118 73945253 LTR12C 1709 + 1018 1202 71025 50 7 56 78 chain 12076 chr10 133797422 + 73945253 73945533 LTR12C 1709 + 676 877 66709 73 1 16 8 15 0 59 6 5 20 80 2 18 chain 10408 chr10 133797422 + 74030788 74030915 MER85 139 + 1 139 69599 98 0 11 29 chain 7074 chr10 133797422 + 74127098 74127179 MER2 342 + 197 278 77353 81 chain 557904 chr10 133797422 + 74216884 74223021 L1PA3long 6157 + 4 6157 248 1186 0 3 417 0 1 2209 0 1 1320 1 11 154 0 1 850 chain 450935 chr10 133797422 + 74347747 74353573 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6467 48068 179 0 1 134 1 0 11 chain 6823 chr10 133797422 + 74739537 74739620 MLT1E3 631 + 548 631 78231 83 chain 17888 chr10 133797422 + 74775997 74776258 MER41C 542 + 266 542 58775 43 1 20 6 0 2 50 17 11 144 chain 38419 chr10 133797422 + 74782611 74783112 MER41C 542 + 9 542 35775 40 0 1 168 0 10 82 5 26 206 chain 4701 chr10 133797422 + 74784499 74784556 MER21B 843 + 25 82 87271 57 chain 18368 chr10 133797422 + 74804855 74805088 AluSp 311 + 57 288 58278 77 1 0 34 2 1 119 chain 5628 chr10 133797422 + 74816165 74816247 Tigger7 736 + 37 151 82671 21 1 2 42 0 31 18 chain 8843 chr10 133797422 + 74848541 74848667 MER30 238 + 112 238 72875 7 4 0 5 2 0 28 0 6 80 chain 2940 chr10 133797422 + 75057833 75057866 MLT1J 494 + 96 129 100502 33 chain 4741 chr10 133797422 + 75083797 75083850 MER53 195 + 142 195 87004 53 chain 44965 chr10 133797422 + 75308130 75308815 Tigger1 2417 + 1170 1790 31603 54 59 0 157 9 12 140 1 2 121 12 2 132 chain 16384 chr10 133797422 + 75312800 75313149 THE1B 368 + 0 368 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133797422 + 75887549 75887708 MER58A 224 + 49 210 84079 45 81 83 33 chain 6333 chr10 133797422 + 75977837 75977913 MIR 256 + 54 130 79885 76 chain 2952 chr10 133797422 + 76013819 76013951 LTR16C 481 + 14 204 100354 24 84 142 24 chain 28131 chr10 133797422 + 76110507 76110855 THE1A 353 + 6 353 44667 101 2 1 245 chain 379746 chr10 133797422 + 76219067 76223274 L1PA3long 6157 + 1945 6155 5486 381 1 0 364 1 0 525 2 0 168 2 1 973 0 4 1017 1 0 118 0 3 97 1 3 556 chain 45657 chr10 133797422 + 76240047 76241246 L1PB1 5432 + 4624 5418 31229 54 0 1 21 0 4 4 1 0 46 304 60 85 0 2 146 1 2 54 149 11 20 1 0 12 1 0 10 2 0 3 2 0 9 2 0 52 2 1 16 2 1 41 2 1 13 26 15 19 8 5 11 2 0 27 1 0 21 1 0 13 1 0 14 chain 6436 chr10 133797422 + 76240253 76240358 L1PB1 5432 + 5134 5231 79551 12 1 0 10 2 0 3 2 0 9 2 0 52 2 1 10 chain 2311 chr10 133797422 + 76256546 76256571 MER97a 834 + 45 70 104686 25 chain 290966 chr10 133797422 + 76475371 76478649 L1PA5 6144 + 2452 5736 7104 2753 0 1 91 0 4 124 0 1 310 chain 15613 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428 0 1 12 chain 259958 chr10 133797422 + 76818710 76822263 HERVH-int 3825 + 0 3474 7972 377 0 1 60 320 0 51 2 0 11 37 31 39 2 1 9 1 0 24 6 18 9 3 0 25 1 0 42 2 1 57 0 1 6 0 2 14 0 3 903 4 31 403 10 11 309 8 7 28 4 0 618 0 3 19 42 253 107 chain 4207 chr10 133797422 + 76819184 76819262 HERVH-int 3825 + 531 603 90077 39 1 0 10 1 0 4 9 5 14 chain 7887 chr10 133797422 + 76819273 76819422 HERVH-int 3825 + 436 576 75162 53 2 0 11 37 31 39 1 0 6 chain 3686 chr10 133797422 + 76819422 76819467 HERVH-int 3825 + 457 500 83679 32 2 0 11 chain 38735 chr10 133797422 + 76823295 76823722 LTR7Y 441 + 0 427 35536 427 chain 35524 chr10 133797422 + 76823736 76824246 L1PA8 5853 + 5348 5853 37704 216 1 0 44 2 0 69 30 29 29 12 11 107 chain 111147 chr10 133797422 + 76837040 76838344 L1PA6 6164 + 4858 6162 16921 180 0 1 273 0 4 238 0 3 82 1 2 262 8 0 248 1 0 11 chain 538776 chr10 133797422 + 76846210 76852331 L1PA4 6152 + 6 6151 1409 554 1 0 16 1 0 207 1 0 4 0 1 46 18 1 872 0 1 1457 4 0 12 0 1 1166 11 0 250 0 1 706 1 0 243 0 56 551 chain 34671 chr10 133797422 + 76894891 76895352 LTR2 463 + 0 463 38236 138 0 7 6 6 0 199 24 25 88 chain 4625 chr10 133797422 + 76907854 76907933 MER45A 178 + 73 178 87676 41 15 41 23 chain 43965 chr10 133797422 + 76918494 76919296 L1PB1 5432 + 4719 5420 32151 36 0 1 347 3 2 11 117 42 11 3 1 50 2 1 16 1 0 44 41 27 19 3 0 19 2 0 26 1 0 19 1 0 13 1 0 16 chain 30154 chr10 133797422 + 77035881 77036247 MLT2A2 560 + 0 366 41886 366 chain 23540 chr10 133797422 + 77233474 77233951 LTR3A 482 + 0 482 51519 115 27 8 14 0 23 68 82 82 38 1 2 23 0 7 6 6 0 21 1 0 13 13 12 10 0 1 39 chain 26942 chr10 133797422 + 77257600 77257967 THE1B 368 + 0 368 46352 169 1 0 31 1 0 9 2 6 91 23 22 40 chain 66801 chr10 133797422 + 77340100 77340860 L1PA5 6144 + 5372 6132 24746 400 0 1 38 1 0 79 0 1 98 1 0 143 chain 5743 chr10 133797422 + 77352418 77352577 MER3 215 + 23 203 82160 5 1 0 65 72 94 16 chain 7609 chr10 133797422 + 77405476 77405593 MER53 195 - 0 119 75847 81 13 15 23 chain 22204 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77736239 77737285 MER11C 1089 + 0 1063 21683 122 1 0 125 0 9 61 0 4 65 1 0 140 1 0 37 16 15 112 1 5 4 1 0 38 0 1 127 0 1 10 0 3 41 1 0 117 0 1 25 chain 36158 chr10 133797422 + 77740316 77740910 L1PB1 5432 + 4859 5419 37308 151 2 0 5 8 7 81 1 2 9 3 0 20 1 0 13 1 0 11 4 0 11 3 1 47 0 2 17 2 1 44 1 0 15 14 1 30 14 11 8 2 0 26 1 0 19 1 0 13 1 0 15 chain 12775 chr10 133797422 + 77760422 77760577 L1PA6 6164 + 6008 6161 65479 146 2 0 7 chain 2495 chr10 133797422 + 77858202 77858279 Tigger3c 601 + 0 75 103674 18 38 36 21 chain 14228 chr10 133797422 + 77904304 77904463 THE1A-int 1579 + 1420 1579 63298 159 chain 20469 chr10 133797422 + 77909255 77909513 L1PA7 6471 + 6209 6469 55814 104 0 1 139 4 5 11 chain 6889 chr10 133797422 + 77954560 77954655 7SLRNA 320 + 197 284 77996 35 8 0 52 chain 32268 chr10 133797422 + 77964437 77964895 Charlie3 2679 + 2221 2679 40133 142 7 12 200 1 0 20 31 26 36 0 1 21 chain 393217 chr10 133797422 + 77994521 77998900 L1PA4 6152 + 1346 5740 5262 787 0 1 1778 0 1 236 0 3 199 0 4 151 0 1 115 0 1 116 1 4 24 8 6 533 0 3 431 chain 4883 chr10 133797422 + 78047270 78047329 MER5A 189 + 130 189 86239 59 chain 561725 chr10 133797422 + 78088450 78094479 L1PA2 6032 + 1 6031 142 3047 0 1 2982 chain 526462 chr10 133797422 + 78096087 78103099 L1PA7 6471 + 7 6461 1981 233 7 17 147 1 0 267 9 8 75 1 0 197 0 1 326 14 15 310 0 3 182 0 1 319 10 11 47 0 3 716 0 4 209 0 6 144 294 0 249 1 0 83 1 0 5 0 2 618 0 1 82 0 4 167 8 9 24 6 11 136 314 0 26 0 8 477 2 0 420 0 13 39 2 0 805 10 7 5 2 0 22 chain 24865 chr10 133797422 + 78142731 78143058 THE1C 375 + 0 326 49501 106 3 4 10 3 0 64 1 2 140 chain 22661 chr10 133797422 + 78152503 78152870 THE1D 372 + 8 372 52883 67 19 0 70 4 6 39 23 31 13 6 12 126 chain 35911 chr10 133797422 + 78219575 78220083 LTR12 884 + 0 873 37467 24 1 0 119 6 5 60 4 46 18 3 70 13 0 22 175 0 236 85 chain 19739 chr10 133797422 + 78238019 78238387 THE1B 368 + 0 368 56743 90 38 33 54 61 66 125 chain 26541 chr10 133797422 + 78242044 78242399 THE1A 353 + 0 353 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18 2 0 17 1 0 70 1 0 19 2 0 101 1 0 6 3 0 126 1 0 21 0 1 8 2 0 34 1 0 9 chain 28766 chr10 133797422 + 89960590 89960896 AluYg6 310 + 0 306 43680 306 chain 403204 chr10 133797422 + 90011058 90015584 L1PA3long 6157 + 1 6152 5116 152 0 1 587 0 1 25 11 139 370 22 1510 727 0 1 2488 0 6 144 chain 3129 chr10 133797422 + 90032807 90032847 L1PA16 3655 + 3143 3182 98552 10 1 0 29 chain 38526 chr10 133797422 + 90034937 90035394 L1PA6 6164 + 5704 6159 35689 450 2 0 5 chain 40514 chr10 133797422 + 90056513 90057249 L1PB1 5432 + 4716 5417 34303 81 0 1 6 4 11 180 1 7 92 11 12 8 2 0 3 17 0 21 8 6 10 25 19 39 8 7 17 1 0 45 1 0 15 2 0 6 17 7 18 2 0 5 1 0 14 2 0 24 1 0 20 2 1 13 1 0 13 chain 179746 chr10 133797422 + 90089700 90092233 MER4-int 2692 + 74 2689 10599 24 2 1 19 3 2 98 12 13 92 0 1 99 4 6 57 10 12 133 0 1 89 7 5 58 0 13 63 1 0 4 0 2 222 1 34 23 4 10 157 1 0 14 2 0 76 12 17 57 24 32 24 0 1 67 0 1 77 0 2 100 1 0 107 1 2 4 0 1 377 2 1 9 5 7 14 14 5 48 0 1 229 0 18 86 chain 24568 chr10 133797422 + 90123474 90123833 THE1B 368 + 0 368 49907 172 3 2 24 35 45 125 chain 22437 chr10 133797422 + 90171449 90171792 THE1B 368 + 0 368 53223 20 5 6 14 0 15 53 1 0 90 35 45 125 chain 117764 chr10 133797422 + 90184890 90186178 L1PA4 6152 + 2489 3777 15922 1288 chain 28527 chr10 133797422 + 90196070 90196445 MLT2A1 477 + 4 379 44075 28 0 1 136 4 1 9 1 2 23 0 1 174 chain 382436 chr10 133797422 + 90229569 90234620 L1PB1 5432 + 19 5103 5439 251 1 0 274 3 1 63 0 4 15 0 1 121 1 0 13 1 0 291 1 0 20 0 1 8 9 8 89 1 20 79 8 9 115 0 12 173 5 11 37 6 5 6 0 1 292 0 1 198 0 1 113 0 1 121 0 4 17 1 0 447 1 0 50 0 3 235 9 10 102 7 6 354 0 1 4 5 4 14 2 1 100 10 11 450 12 0 389 6 8 25 5 9 8 2 0 186 11 10 175 1 0 87 2 0 19 chain 4474 chr10 133797422 + 90250499 90250554 L1MA4 2864 + 2615 2670 88470 55 chain 537067 chr10 133797422 + 90250615 90256632 L1PA3long 6157 + 0 6157 1506 152 0 1 262 0 1 352 8 136 74 1 0 4 0 1 1802 0 4 388 1 0 1171 6 10 952 0 4 64 1 0 779 chain 31681 chr10 133797422 + 90257098 90257531 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139 8 9 78 0 96 112 0 5 21 8 9 30 5 7 112 1 0 35 0 1 6 0 8 344 0 1 5 7 2 92 21 26 588 3 0 33 13 13 130 1 0 71 10 0 14 0 1 28 0 1 104 9 13 64 3 1 56 0 1 100 1 0 94 1 0 37 2 1 245 0 1 6 5 258 8 0 5 62 0 6 111 16 7 86 chain 2885 chr10 133797422 + 90456874 90456954 MLT1C 463 + 358 436 100953 18 36 34 26 chain 447708 chr10 133797422 + 90546075 90551641 HERVL-int 5654 + 0 5654 4419 276 0 1 365 1 0 196 0 8 342 1 2 564 1 3 265 0 1 247 2 0 374 4 55 696 0 1 198 1 0 625 0 1 322 0 1 18 2 3 144 0 10 201 0 5 178 0 11 112 2 0 429 chain 17126 chr10 133797422 + 90600621 90600895 THE1B 368 + 20 319 59386 14 6 21 117 1 0 26 14 16 14 9 17 48 0 1 25 chain 60033 chr10 133797422 + 90600895 90601672 THE1B-int 1605 + 817 1600 26364 104 5 6 28 5 6 177 7 11 92 5 4 254 0 1 100 chain 82000 chr10 133797422 + 90638211 90639187 MER11C 1089 + 0 1073 21243 58 1 92 41 15 14 819 0 7 42 chain 22650 chr10 133797422 + 90650600 90650988 Tigger3 1187 + 514 894 52903 21 3 0 27 0 3 9 3 4 19 1 0 25 2 1 38 1 0 4 2 1 5 2 0 73 14 11 9 1 2 32 1 0 96 chain 79822 chr10 133797422 + 90705123 90706193 L1PA8 5853 + 4783 5853 21656 227 3 4 69 8 9 99 1 5 325 0 1 42 1 0 44 2 0 71 1 0 8 7 6 47 2 1 19 2 1 92 chain 20362 chr10 133797422 + 90715747 90716123 MSTA 426 + 0 426 55936 104 24 52 41 3 50 11 33 0 5 12 0 29 6 26 108 chain 4358 chr10 133797422 + 90723340 90723399 Kanga1b 635 + 530 587 89123 12 2 0 45 chain 54660 chr10 133797422 + 90729836 90730432 L1PA3long 6157 + 5560 6157 27990 343 0 1 253 chain 21687 chr10 133797422 + 90760017 90760429 L1MA5A 2387 + 1901 2295 54242 132 1 0 35 47 51 38 2 0 11 0 12 5 2 1 24 16 13 9 27 0 63 chain 3485 chr10 133797422 + 90771035 90771074 MER52D 1964 + 1168 1207 95346 39 chain 34770 chr10 133797422 + 90807288 90807737 LTR7 482 + 0 482 38179 253 10 41 125 12 14 49 chain 304666 chr10 133797422 + 90807739 90811547 HERVH-int 3825 + 0 3825 6728 212 0 11 250 0 2 55 1 0 11 1 0 7 0 2 20 2 1 9 1 0 9 4 0 14 172 1 11 1 0 16 3 0 8 20 17 35 1 21 57 0 1 8 0 4 401 0 2 463 0 1 36 4 31 291 0 4 1074 0 19 471 0 110 140 chain 36341 chr10 133797422 + 90812809 90813258 LTR7 482 + 0 482 37178 247 1 32 140 12 14 49 chain 7185 chr10 133797422 + 90911854 90911947 MER5A1 166 + 43 135 76995 61 1 0 31 chain 26964 chr10 133797422 + 90934783 90935137 THE1A 353 + 0 353 46317 110 1 0 123 9 9 111 chain 32172 chr10 133797422 + 90978352 90978800 MER4A1 472 + 0 472 40215 4 0 1 4 1 0 5 0 2 199 16 37 115 0 3 21 14 16 6 4 0 59 chain 19510 chr10 133797422 + 90991624 90991853 L1PA2 6032 + 5797 6028 57006 89 0 1 122 4 5 14 chain 42392 chr10 133797422 + 90995643 90996361 L1PB1 5432 + 4703 5415 33134 85 11 18 6 0 4 198 9 11 72 8 20 21 1 0 4 5 4 11 5 1 10 2 0 52 7 6 10 1 0 45 1 0 15 1 0 6 2 0 9 9 0 16 2 0 5 2 1 13 2 0 24 1 0 21 1 0 13 1 0 11 chain 227622 chr10 133797422 + 91026528 91029136 L1PA4 6152 + 2791 5354 8823 583 51 0 141 0 1 144 0 1 1643 0 4 46 chain 21005 chr10 133797422 + 91188085 91188336 L1P1 4361 + 13 264 55109 251 chain 6346 chr10 133797422 + 91223343 91223534 MER5A 189 + 3 189 79850 16 39 31 19 48 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91570692 91570761 MLT1A0 366 + 244 313 81883 69 chain 59234 chr10 133797422 + 91606757 91607400 L1PA3long 6157 + 5514 6157 26593 643 chain 15305 chr10 133797422 + 91623906 91624262 THE1B 368 + 0 368 61909 47 41 48 16 23 24 34 67 71 128 chain 519203 chr10 133797422 + 91643846 91650295 L1PA7 6471 + 10 6466 2304 42 18 10 350 2 0 102 19 2 503 0 1 295 0 1 294 0 5 503 46 46 82 4 0 277 4 9 109 3 1 42 4 0 76 1 2 338 7 11 181 0 2 16 3 0 204 10 9 26 0 4 456 1 0 17 1 0 235 2 1 39 9 12 167 9 13 181 0 4 140 1 5 161 0 1 23 0 1 338 1 10 264 1 0 45 0 6 780 0 1 5 4 0 8 chain 543995 chr10 133797422 + 91749617 91755638 L1PA3long 6157 + 0 6156 1086 152 0 1 628 0 128 832 0 2 453 0 7 78 1 0 4 0 1 106 0 4 1958 0 4 445 9 0 158 0 1 992 3 0 202 chain 68129 chr10 133797422 + 91793569 91794489 L1MA3 4352 + 2374 3461 24424 106 8 0 86 12 164 89 0 25 35 0 4 116 0 1 212 1 0 175 6 0 74 chain 27957 chr10 133797422 + 91809384 91809682 AluYk11 308 + 0 298 44934 298 chain 80425 chr10 133797422 + 91893952 91894890 LTR13A 966 + 0 937 21539 773 1 0 164 chain 21653 chr10 133797422 + 91896925 91897251 THE1A 353 + 25 353 54285 22 0 1 33 14 13 11 31 33 215 chain 19830 chr10 133797422 + 91946116 91946366 AluSp 311 + 39 289 56638 17 1 2 74 1 0 157 chain 55320 chr10 133797422 + 92058184 92060707 L1MA1 4479 + 1293 4190 27769 11 0 3 57 365 0 50 0 3 107 40 22 230 926 977 7 0 11 33 1 0 64 287 991 88 9 5 22 7 6 83 0 5 10 2 1 28 2 0 35 1 0 9 1 0 11 23 14 14 chain 11589 chr10 133797422 + 92096239 92096395 MER2 342 + 150 319 67590 86 3 16 67 chain 310816 chr10 133797422 + 92132613 92136168 L1PA6 6164 + 2596 6162 6594 925 0 4 324 0 1 41 5 2 164 0 1 310 0 4 940 0 4 846 chain 34651 chr10 133797422 + 92138533 92138992 L1MA3 4352 + 3414 3869 38253 321 2 0 93 9 7 34 chain 142983 chr10 133797422 + 92140088 92141641 L1PA3long 6157 + 4602 6157 12863 262 0 2 1291 chain 24702 chr10 133797422 + 92168471 92168787 THE1C 375 + 0 313 49731 120 3 0 20 1 0 33 4 5 135 chain 7743 chr10 133797422 + 92334467 92334563 HY3 101 + 5 101 75505 96 chain 33632 chr10 133797422 + 92372695 92373426 MLT2A1 477 + 0 477 38976 140 0 1 28 1 5 119 0 1 91 301 41 51 chain 108053 chr10 133797422 + 92374850 92377452 SVA_F 1814 + 627 1814 17317 255 1 0 65 177 15 225 1252 0 627 chain 3523 chr10 133797422 + 92375172 92375226 SVA_F 1814 + 962 1143 60292 13 5 132 36 chain 4576 chr10 133797422 + 92375226 92375348 SVA_F 1814 + 967 1089 46729 122 chain 690 chr10 133797422 + 92375586 92375651 SVA_F 1814 + 664 769 59210 47 0 40 18 chain 2328 chr10 133797422 + 92375651 92375700 SVA_F 1814 + 962 1011 53584 49 chain 3807 chr10 133797422 + 92375707 92375749 SVA_F 1814 + 855 898 74292 32 0 1 10 chain 6714 chr10 133797422 + 92375749 92375928 SVA_F 1814 + 1089 1265 46729 88 7 4 84 chain 28079 chr10 133797422 + 92375928 92376701 SVA_F 1814 + 962 1274 44752 49 233 0 159 3 0 17 225 0 87 chain 2703 chr10 133797422 + 92375977 92376009 SVA_F 1814 + 898 930 74830 32 chain 4989 chr10 133797422 + 92376013 92376118 SVA_F 1814 + 1170 1274 53584 17 1 0 87 chain 1606 chr10 133797422 + 92376118 92376191 SVA_F 1814 + 1098 1171 60212 73 chain 3193 chr10 133797422 + 92376390 92376425 SVA_F 1814 + 1187 1222 97956 35 chain 574 chr10 133797422 + 92376446 92376500 SVA_F 1814 + 827 880 59210 28 1 0 25 chain 10178 chr10 133797422 + 92376500 92376613 SVA_F 1814 + 881 1009 70062 66 0 15 47 chain 3799 chr10 133797422 + 92376701 92376806 SVA_F 1814 + 1098 1170 57852 29 33 0 43 chain 24210 chr10 133797422 + 92501401 92501692 AluSc 308 + 12 303 50479 291 chain 34169 chr10 133797422 + 92591082 92591570 LTR10D 510 + 0 510 38584 14 0 3 51 1 7 10 1 0 21 0 7 69 4 7 42 6 5 26 0 1 96 12 16 135 chain 256073 chr10 133797422 + 92794910 92798692 L1PB1 5432 + 1580 5413 8088 392 14 20 52 0 12 202 8 11 156 0 6 15 38 11 39 5 7 234 0 1 6 0 1 59 0 413 477 356 0 34 1 4 231 0 1 251 14 13 135 0 1 264 1 0 183 29 30 260 1 4 12 0 1 20 1 0 5 8 16 10 6 4 47 2 1 9 8 7 43 1 0 16 24 12 19 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 9 chain 176435 chr10 133797422 + 92974544 92976669 SVA_D 2077 + 13 2070 10754 12 1 0 41 0 1 818 40 0 18 3 0 15 6 42 41 0 8 25 1 2 7 0 1 188 50 0 148 33 8 13 4 0 37 4 0 291 0 10 283 0 2 46 chain 3150 chr10 133797422 + 92975760 92975810 SVA_D 2077 + 1056 1105 35404 46 1 0 3 chain 2079 chr10 133797422 + 92975958 92975991 SVA_D 2077 + 1253 1286 35404 33 chain 4555 chr10 133797422 + 93048979 93049060 L1MB8 1703 + 1244 1326 88040 40 15 16 26 chain 3342 chr10 133797422 + 93057622 93057659 MER57A1 433 + 324 361 96676 37 chain 38456 chr10 133797422 + 93127949 93128412 LTR2 463 + 0 462 35750 72 0 1 53 0 3 103 6 1 229 chain 20442 chr10 133797422 + 93159003 93159363 THE1B 368 + 0 368 55838 107 7 10 49 46 43 4 0 1 10 10 18 60 11 10 56 chain 9940 chr10 133797422 + 93344612 93344737 L1PA7 6471 + 6340 6470 70551 112 1 6 12 chain 466087 chr10 133797422 + 93520983 93526276 L1PA4 6152 + 10 5333 3962 118 0 14 901 0 2 96 1 7 675 2 1 1486 0 1 1040 0 4 943 0 4 31 chain 464545 chr10 133797422 + 93534985 93541310 L1PA7 6471 + 6 6369 4005 190 16 15 19 46 46 24 89 286 90 33 34 11 5 15 44 14 89 19 15 15 143 1 22 311 1 0 116 0 3 665 0 4 331 0 18 6 293 0 114 14 15 444 5 9 84 0 10 286 3 2 183 0 2 5 12 10 321 2 0 1201 1 0 162 10 1 172 1 2 4 0 1 70 2 1 686 3 4 58 chain 21394 chr10 133797422 + 93586072 93586469 THE1C 375 + 0 375 54639 63 25 2 42 32 36 32 0 3 8 17 12 15 25 24 138 chain 40131 chr10 133797422 + 93606039 93606610 L1PA17 2846 + 2117 2693 34570 375 5 7 18 6 1 17 1 0 57 2 0 8 1 0 32 1 0 6 16 29 26 chain 3360 chr10 133797422 + 93608601 93608681 MADE1 96 + 0 96 96486 21 11 27 48 chain 49720 chr10 133797422 + 93696416 93697052 L1PA8A 6298 + 5642 6291 29678 525 7 15 6 7 0 9 1 14 44 1 0 36 chain 10434 chr10 133797422 + 93698828 93699089 MER30 238 + 20 235 69551 75 40 65 13 54 0 3 17 0 59 chain 9470 chr10 133797422 + 93771348 93771485 L1PB4 2604 + 2409 2553 71557 38 2 3 35 1 7 61 chain 23081 chr10 133797422 + 93802806 93803164 THE1B 368 + 0 368 52237 128 1 0 40 10 8 25 0 1 5 3 7 22 3 12 56 2 0 6 1 2 39 0 1 4 1 0 12 chain 95892 chr10 133797422 + 93845002 93846425 LTR12C 1709 + 0 1709 18783 53 3 0 157 12 8 44 5 6 70 0 43 83 12 7 46 0 1 132 0 278 184 9 6 29 15 17 44 51 20 51 0 1 113 0 1 17 49 52 10 0 3 151 1 0 82 chain 9009 chr10 133797422 + 93851439 93851549 MER57B2 428 + 7 117 72540 110 chain 26827 chr10 133797422 + 93884468 93884910 L1MA3 4352 + 847 2421 46503 21 20 3 7 0 9 43 6 7 104 14 1153 120 1 0 10 7 8 89 chain 527574 chr10 133797422 + 93927700 93933826 L1PA5 6144 + 0 6144 1933 120 0 14 225 3 1 113 3 17 200 0 18 320 1 2 4 1 0 135 9 0 428 0 1 712 1 0 5 0 1 925 19 1 1415 0 1 74 0 2 560 1 0 841 2 0 9 chain 145912 chr10 133797422 + 93970005 93971626 SVA_D 2077 + 0 2077 12623 645 1 0 245 0 396 28 0 1 35 0 61 650 1 0 16 chain 16186 chr10 133797422 + 94079416 94079610 L1PA7 6471 + 6277 6469 60770 182 2 0 10 chain 25849 chr10 133797422 + 94118415 94118774 THE1B 368 + 7 367 47941 6 2 0 22 5 10 72 6 4 51 2 1 32 0 1 161 chain 17978 chr10 133797422 + 94151946 94152184 L1P4 1494 + 1073 1312 58676 33 1 0 104 0 1 45 1 2 54 chain 47572 chr10 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133797422 + 100178519 100178626 MER5A 189 + 6 111 74320 49 2 0 56 chain 48703 chr10 133797422 + 100208427 100209367 PABL_A 660 + 0 660 30050 53 0 1 33 287 0 71 12 17 71 0 2 240 16 15 157 chain 60195 chr10 133797422 + 100269728 100273242 L1MA4 2864 + 990 2809 26322 8 1 0 190 0 9 11 3 0 33 2471 794 26 0 5 52 1 0 56 22 23 30 11 9 45 9 11 42 4 0 163 3 2 20 1 2 76 1 0 67 0 1 6 3 0 20 43 26 7 1 0 14 1 0 25 7 5 41 chain 173146 chr10 133797422 + 100276469 100278822 SVA_D 2077 + 0 2072 10946 13 1 0 24 0 4 16 1 0 359 2 1 275 0 40 176 11 9 25 78 0 5 11 0 89 0 2 10 102 0 163 49 0 177 0 1 4 117 14 516 0 20 129 chain 3305 chr10 133797422 + 100277372 100277418 SVA_D 2077 + 1129 1175 37846 46 chain 1843 chr10 133797422 + 100277418 100277450 SVA_D 2077 + 948 980 33138 32 chain 5874 chr10 133797422 + 100277565 100277667 SVA_D 2077 + 1097 1175 33138 33 0 1 4 62 37 3 chain 2822 chr10 133797422 + 100277830 100277879 SVA_D 2077 + 1338 1387 33138 49 chain 2487 chr10 133797422 + 100278060 100278105 SVA_D 2077 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109294228 THE1B 368 + 5 368 47804 39 6 23 101 1 0 28 0 1 3 4 0 94 1 0 74 chain 13295 chr10 133797422 + 109295776 109295961 THE1B 368 + 0 198 64632 44 0 15 58 1 0 52 6 5 24 chain 10074 chr10 133797422 + 109295998 109296123 THE1B 368 + 243 368 70242 125 chain 7824 chr10 133797422 + 109341919 109342144 MLT1A 405 + 124 354 75310 49 6 0 11 101 112 58 chain 24313 chr10 133797422 + 109342683 109343069 L1PA8 5853 + 5472 5853 50314 26 1 4 62 1 0 46 2 0 42 55 52 36 2 1 19 1 0 93 chain 461418 chr10 133797422 + 109367269 109372774 L1PA5 6144 + 0 5510 4097 135 7 33 986 31 22 122 0 2 409 3 0 284 0 1 319 6 1 455 0 4 235 0 1 186 9 1 315 4 7 215 7 0 229 9 0 202 0 1 170 0 9 685 0 1 264 1 0 83 1 0 133 chain 22281 chr10 133797422 + 109383022 109383384 MER4A1 472 + 106 472 53435 114 4 26 22 43 22 17 1 0 58 5 8 54 0 1 44 chain 22480 chr10 133797422 + 109384149 109384483 MER4E 760 + 418 753 53146 109 16 12 88 13 12 56 0 6 52 chain 457567 chr10 133797422 + 109393275 109399322 L1PA8A 6298 + 28 6040 4195 6 6 0 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1695 75547 26 31 15 14 1 0 14 1 0 37 12 10 37 chain 23386 chr10 133797422 + 109930597 109930906 AluSp 311 + 3 311 51790 171 10 9 128 chain 54006 chr10 133797422 + 109986095 109986759 L1PB1 5432 + 3672 4344 28226 13 0 4 39 2 5 229 5 6 376 chain 9527 chr10 133797422 + 110068361 110068548 MER2 342 + 37 291 71417 29 18 83 74 28 29 27 0 1 11 chain 11510 chr10 133797422 + 110124856 110125032 MER30 238 + 36 234 67730 71 17 36 46 1 4 41 chain 13389 chr10 133797422 + 110188483 110188651 Tigger3a 397 + 158 326 64488 168 chain 24791 chr10 133797422 + 110319145 110319461 AluY 311 + 0 307 49600 29 4 0 94 9 4 180 chain 28691 chr10 133797422 + 110330645 110330986 LTR14A 344 + 0 344 43814 17 1 0 154 0 4 169 chain 14904 chr10 133797422 + 110347180 110347450 MER57B2 428 + 0 295 62383 124 0 19 8 64 70 74 chain 29186 chr10 133797422 + 110371039 110371383 L1PA7 6471 + 6122 6466 43072 344 chain 22675 chr10 133797422 + 110378658 110379041 THE1D 372 + 0 372 52860 56 16 7 54 4 0 49 50 52 154 chain 7894 chr10 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3051 1 0 2969 chain 43487 chr10 133797422 + 111602856 111603490 THE1B-int 1605 + 0 1600 32463 21 1 0 4 3 0 5 12 15 191 0 13 183 0 25 82 2 0 59 20 951 51 chain 206620 chr10 133797422 + 111608424 111610740 L1PA5 6144 + 3802 6141 9483 1220 0 1 605 0 20 5 0 2 486 chain 534421 chr10 133797422 + 111637115 111643242 L1PA5 6144 + 0 6143 1643 1134 0 1 129 0 1 852 7 10 182 20 12 601 0 1 1023 32 52 239 3 0 104 0 4 452 5 0 9 0 5 958 0 1 40 0 1 184 1 0 140 4 0 8 chain 21738 chr10 133797422 + 111648928 111649272 THE1B 368 + 0 368 54183 40 0 15 112 10 9 12 45 55 125 chain 21455 chr10 133797422 + 111650856 111651190 THE1B 368 + 9 368 54577 31 0 15 14 0 1 104 1 0 24 47 56 16 0 1 97 chain 71600 chr10 133797422 + 111718031 111719182 L1PA15 4387 + 3130 4306 23638 39 2 0 37 0 1 7 2 1 174 1 10 159 1 2 134 0 3 11 5 7 41 0 1 56 2 0 14 3 0 30 0 4 18 1 0 11 4 2 13 30 29 25 0 10 17 8 0 83 16 30 5 1 0 27 1 0 14 14 13 27 1 0 12 13 20 50 6 3 36 chain 4468 chr10 133797422 + 111770334 111770384 L1PA5 6144 + 5701 5751 88502 50 chain 17035 chr10 133797422 + 111770385 111770579 L1PA5 6144 + 5751 5945 59772 194 chain 4380 chr10 133797422 + 111770579 111770629 L1PA5 6144 + 5946 5996 89000 50 chain 13049 chr10 133797422 + 111770630 111770775 L1PA5 6144 + 5998 6143 65025 145 chain 216606 chr10 133797422 + 111792170 111794556 L1PA3long 6157 + 3762 6147 9129 2378 1 0 7 chain 70581 chr10 133797422 + 111797169 111797926 L1PA3long 6157 + 4641 5398 23849 757 chain 25842 chr10 133797422 + 111799057 111799417 THE1B 368 + 0 368 47950 44 5 20 107 1 0 21 2 0 99 3 0 15 7 6 56 chain 553350 chr10 133797422 + 111813807 111819830 L1PA2 6032 + 0 6028 529 74 0 1 2584 0 4 2346 0 1 871 1 0 147 chain 127148 chr10 133797422 + 111869488 111871143 THE1A-int 1579 + 0 1579 14402 169 2 1 5 0 1 90 0 2 234 6 4 157 90 10 737 0 5 92 1 0 72 chain 5361 chr10 133797422 + 111916161 111916303 MER58A 224 + 59 189 83903 17 64 51 49 0 1 12 chain 16045 chr10 133797422 + 111936045 111936226 L1PA4 6152 + 5970 6151 60964 181 chain 3347 chr10 133797422 + 111936311 111936346 LTR33A 529 + 69 104 96627 35 chain 3746 chr10 133797422 + 111958720 111958790 MADE1 96 - 2 94 93276 33 17 39 20 chain 300470 chr10 133797422 + 112041352 112044739 L1PA5 6144 + 2749 6134 6814 536 1 0 397 1 3 973 1 0 433 1 0 203 1 0 840 chain 549562 chr10 133797422 + 112062391 112068402 L1PA2 6032 + 1 6016 778 256 1 0 1465 0 4 2094 0 1 2195 chain 30721 chr10 133797422 + 112072911 112073326 MER1A 529 + 50 457 41371 22 12 1 6 0 7 6 0 4 281 8 0 80 chain 10045 chr10 133797422 + 112091300 112091476 MER30 238 + 36 238 70318 63 2 0 6 4 0 9 17 52 33 3 0 39 chain 542824 chr10 133797422 + 112103927 112109951 L1PA3long 6157 + 0 6150 1150 152 0 1 156 0 1 457 9 137 1236 0 1 19 0 1 46 0 2 3178 8 0 763 chain 197013 chr10 133797422 + 112204707 112206830 L1PA2 6032 + 3907 6030 9811 2123 chain 28723 chr10 133797422 + 112249414 112249790 THE1C 375 + 0 375 43754 180 1 0 5 9 10 155 1 0 25 chain 52658 chr10 133797422 + 112250036 112250612 L1PA3long 6157 + 5571 6147 28684 576 chain 458183 chr10 133797422 + 112250899 112256096 L1PA4 6152 + 3 5187 4176 512 2 0 61 0 3 255 17 0 133 4 5 68 1 0 413 0 4 323 3 0 327 0 1 1796 0 1 1282 chain 39083 chr10 133797422 + 112281689 112282135 L1PA7 6471 + 6025 6467 35300 436 4 0 6 chain 9851 chr10 133797422 + 112290011 112290134 Tigger7 736 + 28 150 70718 98 1 0 24 chain 11362 chr10 133797422 + 112300611 112300833 Tigger4a 237 + 29 228 67986 12 6 0 45 13 0 28 19 12 16 0 4 25 14 13 44 chain 38100 chr10 133797422 + 112328422 112328869 LTR7C 471 + 1 449 35988 106 0 1 341 chain 34422 chr10 133797422 + 112369605 112370121 LTR12C 1709 + 0 546 38415 104 2 3 166 11 16 6 5 0 43 10 53 16 3 0 54 3 0 7 14 6 72 chain 114639 chr10 133797422 + 112370128 112372669 LTR12C 1709 + 0 1668 16447 191 5 6 164 14 0 186 1 0 44 890 0 112 41 0 134 1 0 181 0 4 14 0 1 49 25 24 8 2 0 97 44 13 72 15 16 89 11 113 101 7 6 43 chain 65670 chr10 133797422 + 112370749 112371581 LTR12C 1709 + 608 1709 25037 41 0 280 183 1 0 5 3 1 106 11 4 393 5 4 84 chain 1014 chr10 133797422 + 112371735 112371776 LTR12C 1709 + 822 862 41440 12 8 7 21 chain 3946 chr10 133797422 + 112405362 112405461 Tigger2a 444 + 265 369 91794 34 40 45 25 chain 4146 chr10 133797422 + 112441495 112441548 MER102b 334 + 84 137 90483 53 chain 180999 chr10 133797422 + 112594322 112596319 L1PA3long 6157 + 4155 6157 10548 209 0 2 941 1 0 38 0 1 796 0 3 12 chain 4838 chr10 133797422 + 112625296 112625355 L1PB1 5432 + 5158 5215 86483 9 2 0 48 chain 2430 chr10 133797422 + 112655049 112655204 MER5A 189 + 0 144 104039 14 24 13 12 80 80 25 chain 25037 chr10 133797422 + 112763142 112763454 AluY 311 + 0 298 49217 20 16 0 112 0 1 65 0 1 99 chain 7941 chr10 133797422 + 112897562 112897712 L1PB4 2604 + 2387 2548 75018 25 1 0 35 34 46 55 chain 123412 chr10 133797422 + 113202543 113204592 L1M1 2793 + 663 2695 14958 20 0 1 18 80 73 14 0 2 11 2 1 19 13 8 9 1 0 54 11 8 23 6 9 20 11 3 47 9 8 108 9 13 8 0 1 39 1 0 37 0 4 29 4 0 17 8 0 14 7 11 11 0 5 15 6 5 44 2 19 89 1 12 172 2 0 6 0 2 248 45 5 53 0 3 79 3 4 40 9 4 22 0 5 7 1 2 22 3 7 23 0 2 21 0 1 11 1 5 171 0 1 32 5 0 83 1 0 84 0 3 18 1 0 44 1 0 13 1 0 10 chain 3111 chr10 133797422 + 113289075 113289108 MER58A 224 + 56 89 98694 33 chain 21472 chr10 133797422 + 113349369 113349638 AluY 311 + 40 310 54549 85 2 3 182 chain 47775 chr10 133797422 + 113509505 113510110 HSMAR1 1287 + 672 1286 30369 57 0 1 7 2 0 139 1 0 73 0 1 108 0 1 98 0 2 23 0 7 97 chain 3315 chr10 133797422 + 113523840 113523877 MIRb 242 + 68 105 96877 37 chain 3216 chr10 133797422 + 113537873 113537911 MADE1 96 + 7 46 97745 26 0 1 12 chain 497094 chr10 133797422 + 113672008 113677550 L1PA4 6152 + 592 6143 3235 284 0 1 332 1 0 4 0 1 157 0 1 2144 1 0 164 1 2 207 0 2 1413 0 4 682 1 2 151 chain 40233 chr10 133797422 + 113695512 113696122 MER41B 635 + 0 611 34494 93 1 0 32 13 14 223 15 16 17 14 14 18 1 0 24 16 15 124 0 2 19 chain 34042 chr10 133797422 + 113739881 113740459 L1PB1 5432 + 4858 5404 38676 245 5 2 9 3 0 24 1 0 9 18 13 7 2 0 53 2 1 16 1 0 44 1 0 15 1 0 4 2 0 11 9 0 11 38 33 15 1 0 22 0 3 9 chain 2702 chr10 133797422 + 113744846 113744903 LTR33 499 + 437 499 102335 13 16 21 28 chain 18833 chr10 133797422 + 113747088 113747303 L1PA5 6144 + 5922 6137 57735 215 chain 284752 chr10 133797422 + 113811709 113815181 L1PA8A 6298 + 2785 6290 7292 461 0 1 129 1 0 15 0 1 37 0 1 17 0 3 93 0 9 152 0 1 169 1 2 314 3 5 72 0 1 89 6 7 78 1 0 139 0 1 106 0 4 24 1 0 30 10 9 634 0 4 96 26 34 660 1 0 107 chain 6961 chr10 133797422 + 113827274 113827364 L1PA8 5853 + 5763 5853 77738 90 chain 64901 chr10 133797422 + 113895955 113896675 L1PA3long 6157 + 5436 6156 25215 720 chain 20843 chr10 133797422 + 113934584 113934846 AluY 311 + 39 299 55314 85 1 2 7 3 0 166 chain 36990 chr10 133797422 + 114105608 114106100 MLT2A2 560 + 0 560 36739 98 1 0 93 1 4 211 0 11 10 1 52 71 0 4 6 chain 16101 chr10 133797422 + 114136285 114136519 MER75B 242 + 0 242 60889 29 0 2 100 7 8 29 5 8 40 1 3 23 chain 8455 chr10 133797422 + 114158010 114158156 MER20 218 + 1 155 73784 30 11 19 24 11 12 5 1 0 64 chain 24594 chr10 133797422 + 114321903 114322247 THE1B 368 + 0 353 49874 169 1 0 32 7 13 10 16 20 109 chain 26256 chr10 133797422 + 114339176 114339461 AluYd8 298 + 0 284 47347 111 1 0 173 chain 21700 chr10 133797422 + 114371562 114371820 L1PA7 6471 + 6211 6467 54223 73 0 1 170 3 0 12 chain 26475 chr10 133797422 + 114406257 114406682 L1PA15 4387 + 3935 4348 47019 34 3 9 126 1 0 26 1 0 54 2 1 27 10 5 50 6 3 44 3 1 12 9 4 17 chain 85180 chr10 133797422 + 114414685 114415603 L1PA3long 6157 + 4515 5433 20588 918 chain 4545 chr10 133797422 + 114560257 114560329 L1MB5 1630 + 1240 1313 88086 40 5 4 16 0 2 11 chain 105091 chr10 133797422 + 114581865 114583404 L1PA16 3655 + 1585 3123 17673 127 0 8 69 7 6 106 0 1 99 25 27 35 2 5 28 4 1 9 0 3 381 1 0 185 1 0 204 9 13 11 1 0 17 0 45 15 39 0 105 22 0 15 1 2 21 chain 3692 chr10 133797422 + 114654988 114655035 FordPrefect_a 431 + 362 407 93669 37 2 0 8 chain 136792 chr10 133797422 + 114786698 114788345 SVA_D 2077 + 238 2077 13357 449 0 40 80 41 1 88 17 159 5 0 1 153 48 0 89 0 98 665 1 0 11 chain 3690 chr10 133797422 + 114787531 114787579 SVA_D 2077 + 987 1086 32482 5 0 51 43 chain 26562 chr10 133797422 + 114793177 114793518 MSTA 426 + 45 395 46885 156 1 3 15 2 8 71 0 1 96 chain 4366 chr10 133797422 + 114797662 114797708 MER33 330 + 10 56 89077 46 chain 32445 chr10 133797422 + 114896424 114896865 MER4A1 472 + 0 472 39996 15 5 8 10 1 0 8 0 7 172 0 1 6 0 8 158 1 14 65 chain 46705 chr10 133797422 + 114896904 114897484 LTR10C 591 + 0 587 30770 34 2 0 25 0 2 77 3 1 305 0 7 58 1 3 75 chain 51541 chr10 133797422 + 115036900 115037521 LTR12_ 688 + 0 688 29025 29 5 6 45 0 66 542 chain 53415 chr10 133797422 + 115042134 115042772 LTR12_ 688 + 0 688 28423 115 0 49 248 0 1 275 chain 93951 chr10 133797422 + 115105230 115106487 THE1A-int 1579 + 295 1574 19045 15 0 1 167 0 2 156 35 3 9 0 32 34 1 0 4 0 1 233 8 9 186 1 2 316 3 20 89 chain 27085 chr10 133797422 + 115113430 115113770 THE1B 368 + 0 356 46145 44 1 16 109 1 0 31 0 2 154 chain 16314 chr10 133797422 + 115113784 115114006 HSMAR2 1300 + 1061 1288 60613 200 5 10 17 chain 190616 chr10 133797422 + 115133360 115135553 L1PA5 6144 + 2292 4500 10084 278 1 2 350 0 1 24 1 9 206 0 2 229 6 7 23 0 1 877 0 1 198 chain 183498 chr10 133797422 + 115326075 115328096 L1PA3long 6157 + 4136 6157 10412 298 0 1 872 1 0 473 0 1 230 1 0 146 chain 120050 chr10 133797422 + 115370254 115371817 THE1B-int 1605 + 0 1600 15532 72 0 1 357 0 25 10 0 2 56 1 0 82 2 1 74 4 5 325 4 5 21 8 7 24 0 2 413 0 7 40 0 1 70 chain 19140 chr10 133797422 + 115371822 115372158 THE1B 368 + 0 345 57409 107 24 26 34 2 1 30 1 0 4 40 51 67 2 0 25 chain 20256 chr10 133797422 + 115386937 115387181 L1PA3long 6157 + 5667 5899 56073 162 15 3 67 chain 134077 chr10 133797422 + 115448230 115451358 L1PA14 3548 + 965 3485 13645 29 21 14 76 4 10 26 7 24 300 8 4 10 4 1 55 1027 412 151 13 5 127 21 44 282 4 3 150 1 0 74 0 7 31 3 4 112 1 0 22 11 9 6 2 0 43 14 10 92 22 19 14 11 8 15 1 6 61 1 0 111 16 11 36 4 2 12 1 0 5 1 0 13 0 4 17 0 1 18 21 13 21 chain 32717 chr10 133797422 + 115453604 115453957 L1PA3long 6157 + 5804 6157 39741 353 chain 111518 chr10 133797422 + 115455290 115456643 L1PA7 6471 + 5114 6469 16876 217 0 1 288 2 1 49 1 2 398 5 6 393 chain 76755 chr10 133797422 + 115458896 115459940 MER11C 1089 + 0 1063 22384 247 0 9 61 0 4 64 1 0 178 42 41 86 5 11 36 0 1 127 0 1 54 10 9 108 0 1 25 chain 4850 chr10 133797422 + 115628793 115628868 MADE1 96 + 3 96 86424 27 3 4 9 0 17 36 chain 45168 chr10 133797422 + 115648111 115648644 L1PA5 6144 + 4285 4822 31486 49 7 11 477 chain 3083 chr10 133797422 + 115654756 115654828 MLT1H1 527 + 13 85 98963 22 3 0 5 18 21 24 chain 29259 chr10 133797422 + 115677392 115677745 THE1A 353 + 0 351 42948 109 2 1 92 1 0 149 chain 330228 chr10 133797422 + 115821426 115825440 L1PA7 6471 + 2445 6465 6211 40 1 0 135 1 4 15 0 2 248 6 10 184 0 1 419 1 0 666 0 4 479 0 1 877 2 1 40 0 6 44 0 4 178 0 10 19 0 1 89 1 19 252 42 1 195 10 11 10 0 1 18 3 0 25 3 0 11 chain 165937 chr10 133797422 + 115925308 115927349 L1PA8A 6298 + 2223 4270 11338 277 5 1 239 0 3 222 0 4 271 1 0 113 4 2 70 10 11 39 0 1 229 5 4 47 11 6 116 0 1 133 0 1 136 0 8 113 chain 21577 chr10 133797422 + 115966315 115966668 THE1D 372 + 3 372 54395 58 4 14 90 64 69 115 1 2 21 chain 7910 chr10 133797422 + 116011079 116011222 Tigger1 2417 + 2101 2238 75092 76 37 31 30 chain 3607 chr10 133797422 + 116037317 116037361 L1PA5 6144 + 3655 3699 94361 44 chain 4778 chr10 133797422 + 116049313 116049373 MER51A 677 + 201 261 86811 60 chain 37372 chr10 133797422 + 116150537 116151032 MER75 514 + 13 514 36504 127 8 10 67 1 0 100 2 0 10 1 10 161 2 0 16 chain 56579 chr10 133797422 + 116303616 116304249 L1PA5 6144 + 5092 5722 27398 202 3 0 428 chain 34743 chr10 133797422 + 116348879 116349393 MER1A 529 + 3 524 38195 21 6 13 139 2 1 11 7 11 244 24 22 49 1 0 10 chain 19613 chr10 133797422 + 116354095 116354441 Tigger3b 1229 + 62 421 56896 24 1 0 19 37 59 114 0 1 8 0 4 13 2 0 32 14 0 33 14 17 35 chain 26516 chr10 133797422 + 116380603 116381073 L1PB1 5432 + 4983 5420 46953 120 3 2 8 2 1 33 1 0 11 4 0 11 2 0 51 2 1 10 6 5 37 8 7 16 3 0 6 16 6 17 2 0 7 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 100032 chr10 133797422 + 116393221 116394742 LTR12C 1709 + 0 1709 18298 194 0 1 70 36 33 38 0 43 85 2 0 9 1 0 36 3 18 158 7 294 131 1 0 7 3 1 98 19 12 99 1 2 111 0 1 22 184 31 83 0 10 38 1 0 84 chain 9636 chr10 133797422 + 116394414 116394535 LTR12C 1709 + 1494 1625 66653 91 0 10 30 chain 10319 chr10 133797422 + 116450194 116450362 MER30 238 + 0 201 69764 24 5 23 56 14 29 69 chain 13295 chr10 133797422 + 116473850 116474072 L1PA13 3608 + 3289 3488 64633 47 5 4 51 22 5 47 2 0 5 2 0 18 1 0 22 chain 27178 chr10 133797422 + 116480674 116481083 LTR7 482 + 0 482 46000 68 9 47 109 22 54 10 0 1 130 12 14 49 chain 288578 chr10 133797422 + 116481085 116484851 HERVH-int 3825 + 0 3825 7175 73 0 1 259 1 0 197 1 0 11 1 0 4 0 1 24 1 0 10 1 0 12 41 46 19 2 1 6 0 19 14 1 0 12 22 1 69 1 0 447 15 0 64 0 1 138 9 0 29 0 2 10 1 0 215 4 31 290 0 4 70 0 3 846 3 0 5 199 39 42 1 0 55 9 11 39 0 210 268 0 2 225 chain 4976 chr10 133797422 + 116509116 116509188 L1PB4 2604 + 2351 2421 85773 23 3 1 46 chain 2946 chr10 133797422 + 116527290 116527330 MER58B 340 + 66 106 100450 40 chain 4673 chr10 133797422 + 116538195 116538257 U6 107 + 13 76 87423 45 1 2 16 chain 41014 chr10 133797422 + 116578657 116579116 L1PA4 6152 + 5692 6151 33959 459 chain 13081 chr10 133797422 + 116614299 116614689 MLT1A1 405 + 0 401 64963 26 0 1 9 7 8 43 189 199 76 1 0 39 chain 6378 chr10 133797422 + 116657678 116657755 MER58B 340 + 252 329 79752 77 chain 7433 chr10 133797422 + 116663353 116663443 MLT1C 463 + 360 450 76295 90 chain 15633 chr10 133797422 + 116687882 116688108 MER30 238 + 0 238 61492 30 7 6 72 4 20 62 3 0 48 chain 59177 chr10 133797422 + 116703968 116704620 L1PA4 6152 + 5497 6151 26612 148 0 2 504 chain 23474 chr10 133797422 + 116759711 116760070 THE1B 368 + 0 368 51627 169 1 0 23 59 69 107 chain 7523 chr10 133797422 + 116830975 116831066 Tigger3c 601 + 487 578 76071 91 chain 20998 chr10 133797422 + 116851948 116852283 THE1C 375 + 0 336 55128 64 12 7 69 1 5 34 14 16 46 1 0 4 3 4 87 chain 29258 chr10 133797422 + 116904919 116905229 AluYb9 318 + 0 309 42949 200 1 0 109 chain 12626 chr10 133797422 + 116998357 116998544 MER44A 345 + 37 229 65764 22 8 9 112 6 10 39 chain 3772 chr10 133797422 + 117017551 117017593 L1MC3 1789 + 1337 1379 93049 42 chain 278960 chr10 133797422 + 117031506 117036502 L1MA2 4263 + 15 4114 7454 7 1 0 29 1 4 12 0 4 33 28 46 13 14 0 76 13 12 25 8 6 51 1 0 9 1 0 4 0 1 106 0 2 28 6 5 80 1 2 5 0 1 127 318 12 35 0 10 158 0 9 123 1 2 252 4 0 32 2 6 106 0 3 42 0 3 75 0 1 174 1 0 51 12 13 76 0 3 82 2 0 34 1 2 140 0 1 90 0 1 54 12 5 31 2 1 199 23 23 33 303 0 26 0 1 23 8 7 85 9 10 30 0 1 143 0 1 142 0 3 5 14 5 242 8 9 103 0 8 91 1 2 45 2 0 16 6 2 8 307 0 69 1 0 56 6 5 24 5 6 49 10 9 7 1 0 138 11 9 45 1 0 48 7 0 45 1 0 11 chain 20470 chr10 133797422 + 117065028 117065322 L1PA8 5853 + 5565 5853 55812 45 2 0 68 19 17 45 2 1 19 1 0 93 chain 12321 chr10 133797422 + 117072140 117072290 MLT2A1 477 + 207 357 66266 150 chain 3970 chr10 133797422 + 117074444 117074519 Charlie4z 170 + 54 137 91642 20 15 23 40 chain 3420 chr10 133797422 + 117088186 117088279 Tigger9b 617 + 129 231 95904 22 22 23 14 12 20 23 chain 48634 chr10 133797422 + 117108176 117108711 L1PA5 6144 + 5603 6138 30074 535 chain 5680 chr10 133797422 + 117186701 117186770 MIRb 242 + 72 141 82430 69 chain 22204 chr10 133797422 + 117194373 117194746 THE1C 375 + 0 375 53549 85 0 1 17 19 41 9 16 0 26 0 4 7 17 9 142 10 9 25 chain 28428 chr10 133797422 + 117230091 117230458 THE1B 368 + 0 368 44225 13 2 0 24 0 5 130 2 1 120 1 0 75 chain 27148 chr10 133797422 + 117302635 117303000 THE1A 353 + 0 353 46047 110 1 0 31 1 0 61 1 0 77 1 0 20 13 5 49 chain 122914 chr10 133797422 + 117303000 117304557 THE1A-int 1579 + 0 1579 15035 81 2 0 35 0 3 50 24 24 407 0 1 119 1 0 75 1 0 7 4 21 17 0 5 140 6 5 325 0 1 191 2 1 66 0 1 4 chain 26482 chr10 133797422 + 117304557 117304910 THE1A 353 + 0 353 47003 111 1 0 26 5 6 32 1 0 27 1 0 36 4 6 109 chain 21076 chr10 133797422 + 117361706 117362043 MER2 342 + 6 341 55033 56 29 37 9 1 0 187 14 5 41 chain 30879 chr10 133797422 + 117394889 117395393 L1PA15 4387 + 3835 4325 41241 56 4 2 13 1 2 24 1 0 78 2 1 93 1 0 22 0 4 45 11 10 25 4 0 6 5 4 47 9 3 46 2 0 9 chain 22268 chr10 133797422 + 117413616 117413904 AluSc5 308 + 16 298 53452 23 4 5 245 7 0 9 chain 55831 chr10 133797422 + 117426342 117427009 PABL_A 660 + 0 660 27619 48 0 1 420 8 0 191 chain 5601 chr10 133797422 + 117560447 117560517 MLT1B 390 + 288 357 82802 65 1 0 4 chain 44701 chr10 133797422 + 117618301 117618854 MER41A 554 + 0 554 31742 42 2 1 429 0 2 80 chain 3202 chr10 133797422 + 117662701 117662735 MER58D 378 + 323 357 97880 34 chain 38359 chr10 133797422 + 117715474 117715974 L1PA8 5853 + 5360 5853 35807 204 1 0 44 2 0 70 12 10 52 2 1 18 2 1 93 chain 3182 chr10 133797422 + 117729921 117729958 MER3 215 - 131 168 98065 37 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368 47323 40 0 15 27 0 1 25 1 0 31 0 4 23 1 0 3 1 0 29 0 2 96 1 0 72 chain 33980 chr10 133797422 + 119295360 119295930 L1PB1 5432 + 4858 5424 38721 174 0 16 4 1 0 51 3 0 11 1 0 24 1 0 8 1 0 10 6 2 9 2 0 53 2 1 16 1 0 43 1 0 15 3 0 14 32 27 10 2 0 24 1 0 21 1 0 4 0 9 16 1 0 4 chain 26269 chr10 133797422 + 119463190 119463537 THE1B 368 + 13 368 47319 21 0 5 130 1 0 32 0 1 7 1 5 16 1 0 138 chain 24159 chr10 133797422 + 119482971 119483353 THE1D 372 + 0 372 50562 75 19 0 60 1 5 48 9 6 12 13 15 18 0 6 127 chain 21683 chr10 133797422 + 119599525 119599851 THE1A 353 + 0 353 54251 15 2 0 12 0 1 19 0 1 48 1 0 15 0 2 6 17 15 78 2 30 111 chain 31678 chr10 133797422 + 119689177 119689564 MER41A 554 + 13 412 40601 79 0 1 131 0 11 177 chain 25956 chr10 133797422 + 119710976 119711318 THE1B 368 + 0 368 47784 40 0 15 14 0 14 83 8 6 60 1 0 136 chain 158949 chr10 133797422 + 119721384 119723093 SVA_F 1814 + 9 1814 11812 927 0 1 10 0 15 49 0 78 262 0 1 446 0 1 15 chain 8921 chr10 133797422 + 119764885 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110 1 0 54 0 1 20 2 0 4 1 0 12 5 1 35 4 2 12 1 0 3 1 0 18 1 0 42 chain 4405 chr10 133797422 + 121610913 121611026 MER53 195 - 11 108 88871 7 1 0 33 3 0 6 0 3 6 1 0 4 1 0 7 22 9 22 chain 75479 chr10 133797422 + 121652167 121653299 L1PB1 5432 + 4279 5399 22720 342 1 0 9 6 0 105 0 1 22 0 3 63 1 0 274 18 16 24 8 6 12 2 0 3 2 0 8 14 12 17 0 4 20 2 1 10 2 5 36 0 2 6 1 0 16 1 3 27 3 1 5 1 0 14 2 0 24 1 0 23 1 0 6 chain 68751 chr10 133797422 + 121699431 121700242 L1PA7 6471 + 5668 6469 24270 346 11 1 454 chain 21039 chr10 133797422 + 121829470 121829728 AluSg7 307 + 43 300 55071 161 6 5 91 chain 8923 chr10 133797422 + 121857517 121857648 L1PA16 3655 + 3154 3290 72731 46 13 18 72 chain 7873 chr10 133797422 + 121898271 121898429 Tigger5 388 + 141 298 75190 84 48 47 26 chain 7378 chr10 133797422 + 121918994 121919299 LTR12 884 + 181 744 76451 27 0 42 24 166 382 41 11 11 36 chain 4028 chr10 133797422 + 122091203 122091341 MER33 330 + 72 207 91257 29 77 74 32 chain 14516 chr10 133797422 + 122126847 122127197 MLT1A0 366 + 0 310 62883 25 7 0 28 0 1 4 1 0 90 1 0 9 89 90 54 33 0 9 chain 21342 chr10 133797422 + 122381326 122381703 MSTA 426 + 1 421 54714 65 49 73 56 0 10 8 9 0 14 21 19 50 0 20 105 chain 22970 chr10 133797422 + 122537763 122538111 L1PB 1623 + 1178 1515 52401 128 3 1 143 6 4 12 1 2 16 1 0 4 3 0 13 5 1 13 chain 29793 chr10 133797422 + 122698844 122699169 AluYb8 318 + 0 317 42240 118 8 0 199 chain 95836 chr10 133797422 + 122809669 122810713 L1PA3long 6157 + 2114 3158 18790 1044 chain 50550 chr10 133797422 + 122857997 122858565 L1PA5 6144 + 5578 6143 29364 550 3 0 15 chain 510486 chr10 133797422 + 122867255 122872940 L1PA4 6152 + 450 6145 2745 793 0 1 15 2 0 146 4 13 1759 1 0 763 0 1 1139 1 0 199 1 0 25 0 4 837 chain 108259 chr10 133797422 + 122904813 122906498 L1PB1 5432 + 3736 5422 17283 256 1 0 73 1 3 23 1 4 13 16 0 206 8 0 15 13 18 118 1 0 10 0 4 66 0 1 4 23 22 41 0 6 11 2 0 215 5 4 20 0 22 90 0 10 33 14 15 64 8 16 15 1 0 10 1 0 12 2 0 3 2 0 9 4 2 52 1 0 14 1 0 45 1 0 14 25 13 18 3 1 5 1 0 14 2 0 24 1 0 21 2 1 12 1 0 18 chain 114600 chr10 133797422 + 122919571 122920830 L1PA4 6152 + 4479 5738 16460 1259 chain 188540 chr10 133797422 + 122942234 122944285 L1PA3long 6157 + 3855 5907 10189 785 0 1 1266 chain 101086 chr10 133797422 + 122966207 122967765 L1PA13 3608 + 90 1638 18174 17 6 4 27 3 0 18 14 13 10 0 1 21 30 19 59 11 12 92 1 0 36 3 2 7 1 0 17 2 0 29 1 0 7 1 0 8 43 39 4 1 0 46 0 9 44 2 0 112 1 0 63 5 4 88 1 0 215 4 5 183 0 7 87 1 0 6 4 5 88 0 1 17 8 12 114 chain 5000 chr10 133797422 + 122977202 122977260 L1MC1 2226 + 1426 1484 85658 58 chain 8910 chr10 133797422 + 123003253 123003442 MER2 342 + 119 314 72759 27 0 3 51 1 5 20 9 7 30 36 37 15 chain 4364 chr10 133797422 + 123012330 123012380 MSTD 398 + 4 54 89091 50 chain 82858 chr10 133797422 + 123177911 123178919 L1PA7 6471 + 5446 6461 21055 37 0 1 25 0 2 103 0 3 276 12 15 114 14 12 427 chain 7224 chr10 133797422 + 123191520 123191878 MLT1C 463 + 63 455 76874 61 109 100 35 130 173 23 chain 7251 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124423583 LTR23 429 + 123 296 69350 16 1 0 11 15 19 52 0 5 70 chain 3150 chr10 133797422 + 124433317 124433374 L1MA4 2864 + 2746 2801 98360 19 7 5 31 chain 10221 chr10 133797422 + 124564864 124565004 L1PB1 5432 + 5161 5296 69966 6 2 0 53 2 1 16 1 0 44 1 0 15 chain 4615 chr10 133797422 + 124566544 124566599 MER63D 473 + 310 365 87729 55 chain 18076 chr10 133797422 + 124656842 124657037 L1PA5 6144 + 5937 6132 58583 195 chain 10535 chr10 133797422 + 124702735 124702857 MSTB 430 + 2 124 69348 122 chain 8387 chr10 133797422 + 124721961 124722134 L1MA5A 2387 + 2168 2306 73930 12 1 0 7 2 1 27 8 5 12 29 0 63 1 0 11 chain 28997 chr10 133797422 + 124800426 124800814 LTR7 482 + 0 482 43324 86 0 50 73 13 55 41 0 1 70 0 1 105 chain 22392 chr10 133797422 + 124805118 124805357 AluYb8 318 + 67 305 53288 139 1 0 99 chain 8091 chr10 133797422 + 124810061 124810167 MER30 238 + 122 230 74658 7 4 0 22 0 6 73 chain 21637 chr10 133797422 + 124843448 124843705 AluSp 311 + 29 286 54304 257 chain 36440 chr10 133797422 + 124881245 124882590 LTR10E 629 + 0 629 37115 28 0 1 135 70 10 18 739 87 17 2 1 55 10 9 202 30 28 32 1 0 6 chain 49090 chr10 133797422 + 125008675 125009257 LTR10C 591 + 7 591 29909 503 0 1 4 0 1 75 chain 19967 chr10 133797422 + 125317139 125317361 L1PA5 6144 + 5922 6144 56442 222 chain 61867 chr10 133797422 + 125339292 125340322 L1PB1 5432 + 4449 5427 25896 181 5 0 68 12 11 95 0 9 269 0 3 18 48 21 14 1 0 9 27 21 52 2 1 16 1 0 44 20 16 16 29 18 15 2 0 24 7 6 15 1 0 13 1 0 18 2 0 5 chain 32564 chr10 133797422 + 125438266 125438795 L1PA15 4387 + 3858 4366 39901 32 2 0 42 1 0 172 1 0 18 7 11 52 1 0 22 4 0 9 2 1 39 17 14 44 3 1 12 15 6 23 1 0 10 chain 16776 chr10 133797422 + 125488057 125488296 MER47A 366 + 54 295 60063 26 4 0 188 5 11 16 chain 24318 chr10 133797422 + 125506228 125506520 L1PA8A 6298 + 5992 6288 50306 220 1 5 71 chain 23094 chr10 133797422 + 125510366 125510727 THE1B 368 + 0 368 52217 172 1 0 26 54 62 108 chain 122801 chr10 133797422 + 125517776 125519176 SVA_D 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345 466 96730 11 1 0 7 46 66 37 chain 44417 chr10 133797422 + 125944491 125944998 MER9a1 513 + 0 509 31875 61 0 2 446 chain 548824 chr10 133797422 + 125945237 125951250 L1PA2 6032 + 0 6030 820 704 7 0 850 10 0 23 0 5 1481 1 0 24 1 0 49 0 4 307 5 0 776 0 5 285 1 0 827 1 25 609 0 4 52 chain 54729 chr10 133797422 + 125963266 125963903 L1PA5 6144 + 5504 6144 27965 239 3 6 395 chain 3644 chr10 133797422 + 125972041 125972084 MIR 256 + 74 117 94061 43 chain 264738 chr10 133797422 + 126025032 126029178 L1PA11 4918 + 13 4578 7833 29 2 0 43 4 1 30 2 1 8 5 3 51 1 0 35 5 2 85 0 4 59 0 5 66 0 3 55 8 7 62 141 20 87 1 5 201 1 5 37 20 325 28 8 13 132 4 7 31 0 5 25 15 20 36 0 34 30 0 17 89 0 2 12 11 14 76 1 2 204 0 4 50 10 3 47 0 4 64 4 6 37 1 0 27 0 4 14 2 18 66 0 4 52 16 37 87 1 0 4 0 1 86 75 82 126 2 3 120 12 15 49 0 3 30 0 3 46 0 6 72 5 9 98 1 9 70 0 3 20 0 4 55 0 1 37 0 2 22 0 2 52 0 3 23 0 8 62 0 4 137 0 6 89 0 3 37 0 1 179 10 28 31 9 16 13 9 18 28 0 1 29 25 29 11 0 8 55 1 0 82 2 0 15 1 0 12 44 38 15 1 0 13 2 0 11 chain 14863 chr10 133797422 + 126057215 126057375 L1HS 6032 + 5869 6029 62438 160 chain 57795 chr10 133797422 + 126076922 126077772 L1PA16 3655 + 1763 2618 27020 32 1 0 206 3 0 5 2 4 47 0 1 89 59 69 253 2 1 43 3 0 105 chain 29828 chr10 133797422 + 126111976 126112333 L1PA8A 6298 + 5912 6290 42209 62 2 0 115 0 23 178 chain 43648 chr10 133797422 + 126149446 126149984 MLT2A2 560 + 10 559 32357 389 5 16 144 chain 27669 chr10 133797422 + 126156247 126156655 MER51B 395 + 0 395 45373 34 17 5 202 38 37 117 chain 73272 chr10 133797422 + 126172402 126173257 L1PA7 6471 + 5603 6461 23268 18 0 3 269 2 1 325 1 2 240 chain 23223 chr10 133797422 + 126206783 126207148 THE1B 368 + 0 368 52047 74 15 9 86 1 0 29 40 48 40 0 2 80 chain 48399 chr10 133797422 + 126246402 126247008 L1PREC2 3366 + 1738 2341 30150 376 0 3 194 6 0 30 chain 11450 chr10 133797422 + 126261009 126261172 MER2 342 + 137 292 67831 87 13 5 63 chain 53738 chr10 133797422 + 126379070 126379699 L1PA7 6471 + 5839 6466 28301 464 2 0 5 1 0 123 0 1 34 chain 396025 chr10 133797422 + 126440622 126446132 L1PB1 5432 + 33 5409 5213 323 0 12 20 4 0 66 15 14 255 2 3 42 0 1 111 0 1 413 0 1 7 1 2 93 15 0 355 4 1 20 3 1 7 0 2 96 202 101 131 0 1 265 20 15 55 0 4 42 11 4 38 0 1 329 13 0 91 0 5 376 0 1 64 0 1 322 5 7 61 0 1 381 0 1 91 0 3 339 0 4 8 3 0 39 0 1 442 1 0 13 15 0 22 1 0 9 16 11 10 2 0 47 5 26 34 6 5 16 3 0 17 12 3 11 25 20 23 1 0 15 7 6 13 1 0 5 chain 10688 chr10 133797422 + 126442508 126442628 L1PB1 5432 - 3460 3580 69065 120 chain 5397 chr10 133797422 + 126531257 126531457 MER20 218 + 22 218 83714 54 73 67 17 37 39 19 chain 4536 chr10 133797422 + 126537783 126537864 MLT1C 463 + 0 80 88130 17 19 18 45 chain 4669 chr10 133797422 + 126548142 126548203 L1MD1 2063 + 935 996 87444 61 chain 4795 chr10 133797422 + 126556964 126557061 MADE1 96 - 0 96 86726 34 25 24 38 chain 13800 chr10 133797422 + 126572814 126573013 MER41A 554 + 248 466 63883 66 2 0 5 0 2 24 1 0 33 7 26 26 0 1 35 chain 335418 chr10 133797422 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126780988 THE1C 375 + 0 375 46302 77 18 26 58 0 1 6 1 0 174 0 1 6 1 0 26 chain 7921 chr10 133797422 + 126789585 126789686 L1MCa 1829 + 718 819 75070 101 chain 99001 chr10 133797422 + 126793064 126794460 L1PB2 3958 + 2439 3838 18413 38 0 2 235 0 2 113 1 11 19 0 1 64 1 0 24 7 1 7 0 6 56 0 1 10 6 12 72 0 1 24 0 3 74 0 1 91 2 0 54 1 0 13 10 0 64 2 0 13 4 0 22 6 8 64 1 0 73 1 0 53 9 8 67 13 11 17 5 4 60 chain 6494 chr10 133797422 + 126840016 126840104 Tigger3a 397 + 78 242 79378 19 0 76 69 chain 204168 chr10 133797422 + 126862105 126864729 L1PA5 6144 + 3809 6142 9565 279 0 7 249 0 4 441 0 8 23 309 0 474 1 0 848 chain 543037 chr10 133797422 + 126881879 126887891 L1PA3long 6157 + 10 6157 1133 93 0 1 48 0 1 7 0 1 289 1 0 321 0 1 4 0 128 847 0 1 829 0 3 3573 chain 82399 chr10 133797422 + 126890632 126891687 MER11C 1089 + 0 1063 21151 251 0 1 65 0 4 21 1 0 42 2 1 206 6 4 16 5 7 69 0 4 11 1 0 35 0 1 127 0 1 197 chain 7859 chr10 133797422 + 126920806 126920900 HY3 101 + 0 94 75231 94 chain 26048 chr10 133797422 + 127037955 127038253 AluSp 311 + 4 302 47661 298 chain 17790 chr10 133797422 + 127078572 127078846 L1PB1 5432 + 4942 5220 58906 110 2 1 44 4 17 20 1 0 13 1 0 9 2 0 3 2 0 9 3 1 51 chain 3353 chr10 133797422 + 127299029 127299066 MLT1C 463 + 70 107 96567 37 chain 129629 chr10 133797422 + 127461243 127462652 L1PA4 6152 + 4727 6136 14078 1409 chain 27985 chr10 133797422 + 127489405 127489717 AluYa5 310 + 0 307 44893 18 0 1 107 6 0 181 chain 128481 chr10 133797422 + 127518942 127520790 L1PA15 4387 + 2515 4366 14223 179 0 1 113 1 0 11 0 11 6 0 3 223 0 1 133 0 1 153 6 17 237 11 8 201 2 0 14 4 0 64 3 1 21 19 19 40 22 23 14 4 5 90 1 0 21 19 18 42 1 0 22 4 0 10 1 0 50 6 3 44 27 24 17 1 0 11 chain 15278 chr10 133797422 + 127533097 127533329 MER30 238 + 0 238 61946 107 15 33 20 12 0 78 chain 31894 chr10 133797422 + 127557318 127557748 MLT2A1 477 + 0 477 40419 170 4 1 30 0 2 74 1 8 95 7 5 11 0 43 38 chain 32434 chr10 133797422 + 127589139 127589495 L1PA3long 6157 + 5791 6147 40009 356 chain 5432 chr10 133797422 + 127603231 127603343 LTR40a 516 + 396 510 83550 57 36 38 19 chain 436135 chr10 133797422 + 127707062 127712136 L1PA5 6144 + 1065 6135 4641 104 9 0 66 1 0 312 7 8 189 0 1 565 7 0 55 0 1 810 4 3 22 0 1 347 5 7 352 0 1 1918 1 0 83 0 8 217 chain 282904 chr10 133797422 + 127722627 127726545 L1MA1 4479 + 228 4139 7344 36 1 0 18 2 0 176 3 8 234 0 4 39 0 10 26 11 12 92 0 2 86 6 0 25 0 11 27 5 4 371 3 0 6 20 6 12 1 3 320 0 1 100 0 1 107 0 12 59 14 17 36 3 0 15 0 3 12 0 1 4 6 4 168 4 1 6 0 3 23 6 9 264 9 13 52 2 1 104 2 0 32 1 0 40 0 1 113 1 0 27 2 0 172 2 0 18 4 0 76 1 0 12 4 0 48 5 0 75 8 4 349 2 0 15 2 1 30 0 1 40 1 0 19 2 0 14 1 0 20 0 1 67 1 0 5 11 8 118 1 0 27 2 0 34 chain 142440 chr10 133797422 + 127767864 127769873 L1PB1 5432 + 3424 5422 12895 146 0 1 5 19 32 125 0 3 226 6 7 11 19 19 206 0 4 204 6 9 207 9 7 76 1 2 27 0 1 361 17 11 32 1 0 10 7 3 9 2 0 52 2 1 14 2 1 45 1 0 15 1 0 4 19 8 18 9 6 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 3005 chr10 133797422 + 127775727 127775765 MER58C 217 + 162 200 99803 38 chain 22155 chr10 133797422 + 127777904 127778265 THE1D 372 + 0 346 53631 48 18 0 26 4 5 21 3 4 62 6 10 15 11 9 25 1 0 121 chain 40742 chr10 133797422 + 127783156 127783810 L1PA13 3608 + 2925 3548 34127 204 1 0 28 9 8 109 3 1 60 1 0 56 8 5 47 2 0 5 2 0 19 1 0 16 0 3 11 18 7 14 1 0 4 23 14 12 chain 33200 chr10 133797422 + 127800016 127800448 MLT2A1 477 + 0 477 39352 169 1 5 178 0 9 24 3 35 57 chain 28642 chr10 133797422 + 127804228 127804533 AluYk11 308 + 0 305 43881 305 chain 164048 chr10 133797422 + 127809702 127811543 L1PA5 6144 + 4294 6135 11480 1841 chain 18729 chr10 133797422 + 127832421 127832851 MER51B 395 + 0 395 57870 22 84 47 19 76 79 20 1 0 68 3 4 96 1 0 40 chain 4395 chr10 133797422 + 127834100 127834158 MER53 195 + 39 98 88911 40 0 1 18 chain 18416 chr10 133797422 + 127863466 127863702 LTR10B1 532 + 297 532 58214 7 1 0 228 chain 25220 chr10 133797422 + 127916163 127916542 THE1C 375 + 13 375 48912 34 10 7 132 25 9 33 4 6 141 chain 43530 chr10 133797422 + 127952196 127952824 LTR71B 605 + 0 605 32434 69 1 0 56 23 25 27 2 1 105 36 14 57 1 0 251 chain 19601 chr10 133797422 + 127967282 127967586 THE1B 368 + 0 306 56905 145 2 1 23 1 0 21 7 10 14 14 16 12 2 1 63 chain 51349 chr10 133797422 + 128038225 128038805 L1PA5 6144 + 5552 6132 29097 580 chain 17255 chr10 133797422 + 128147112 128147464 THE1B 368 + 1 356 59510 107 17 18 51 66 65 27 0 2 15 0 2 18 17 16 34 chain 52639 chr10 133797422 + 128243519 128244121 L1PA5 6144 + 5541 6143 28690 602 chain 113505 chr10 133797422 + 128441140 128442715 L1PA10 4194 + 245 1767 16612 5 1 0 22 3 1 14 1 0 7 37 12 7 1 0 22 2 0 21 1 0 6 6 5 13 5 0 10 9 0 13 1 0 78 6 3 100 2 1 1182 chain 3175 chr10 133797422 + 128457692 128457919 MLT1J 494 + 40 259 98144 24 1 0 4 161 155 5 1 0 31 chain 19018 chr10 133797422 + 128552390 128552719 THE1B 368 + 10 354 57534 34 10 25 50 11 2 54 1 0 5 0 1 4 1 0 13 41 51 105 chain 88870 chr10 133797422 + 128586614 128587595 L1PA3long 6157 + 5172 6157 19878 138 0 4 843 chain 25798 chr10 133797422 + 128616429 128616784 THE1C 375 + 2 363 48016 77 6 7 56 0 4 33 0 3 35 1 0 133 1 0 13 chain 25440 chr10 133797422 + 128643998 128644333 THE1C 375 + 0 335 48569 117 6 3 83 0 3 129 chain 5459 chr10 133797422 + 128651159 128651346 L1PB4 2604 + 2381 2572 83406 5 2 0 24 0 3 17 90 94 28 1 0 20 chain 62671 chr10 133797422 + 128654993 128655844 L1PA16 3655 + 2729 3578 25717 174 1 0 7 8 7 283 0 4 87 12 10 97 14 12 168 chain 84564 chr10 133797422 + 128772387 128773489 THE1B-int 1605 + 1 1596 20706 12 1 3 414 0 25 362 0 3 6 8 1 126 0 469 110 1 2 62 chain 90024 chr10 133797422 + 129014750 129015803 L1PA6 6164 + 5094 6156 19677 895 0 8 140 1 2 17 chain 17638 chr10 133797422 + 129072049 129072362 THE1B 368 + 0 327 59082 45 19 25 98 6 5 25 0 3 7 25 32 63 2 0 7 1 2 15 chain 16075 chr10 133797422 + 129216834 129217029 L1PA7 6471 + 6270 6463 60924 131 3 1 61 chain 13128 chr10 133797422 + 129317069 129317260 MER30 238 + 30 237 64883 77 4 23 68 7 4 35 chain 2548 chr10 133797422 + 129383083 129383120 MADE1 96 - 59 96 103388 37 chain 15157 chr10 133797422 + 129406725 129407061 L1PB1 5432 + 5119 5427 62084 17 1 0 11 1 0 9 2 0 3 2 0 10 2 0 9 10 7 35 2 1 16 1 0 43 1 0 16 3 0 6 16 6 11 1 8 4 1 0 11 13 11 17 1 0 21 1 0 13 1 0 18 2 0 5 chain 328475 chr10 133797422 + 129575060 129578687 L1PA4 6152 + 2513 6146 6243 1842 0 1 942 0 4 706 0 1 137 chain 23331 chr10 133797422 + 129738697 129738991 L1P3 4156 + 3848 4139 51876 259 2 0 7 2 1 24 chain 4296 chr10 133797422 + 129934003 129934055 MER53 195 + 5 57 89526 52 chain 4377 chr10 133797422 + 129977747 129977871 MLT1E2 623 + 112 235 89018 44 59 58 21 chain 309119 chr10 133797422 + 129985403 129989964 L1PB1 5432 + 702 5422 6633 60 9 12 163 0 7 79 4 5 199 0 7 156 315 14 5 0 2 85 0 3 475 7 0 48 7 477 136 14 8 5 1 0 29 0 1 402 27 18 6 0 4 81 2 0 13 0 3 304 0 14 203 4 6 223 3 25 194 9 13 18 0 1 254 1 2 42 4 7 115 1 0 183 2 0 6 2 0 131 0 1 147 47 20 22 1 0 6 3 2 12 33 26 37 1 0 18 1 0 43 1 0 16 24 12 18 9 6 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 3308 chr10 133797422 + 130076132 130076172 THE1D 372 + 332 372 96943 40 chain 530466 chr10 133797422 + 130090116 130096861 L1PA7 6471 + 0 6470 1808 213 0 1 189 0 1 211 15 11 290 6 5 321 0 6 314 0 1 187 0 1 124 0 1 337 1 0 272 1 0 154 3 6 50 2 0 400 0 4 241 0 1 141 5 4 17 1 0 118 310 0 864 0 1 246 66 0 332 0 1 185 1 0 371 1 0 79 0 2 43 0 1 343 6 104 105 26 18 154 chain 33994 chr10 133797422 + 130120580 130121010 MER4A1 472 + 11 472 38711 25 0 5 184 0 22 63 1 6 107 1 0 49 chain 14834 chr10 133797422 + 130124766 130125047 THE1B 368 + 5 307 62474 72 30 44 16 5 6 26 1 0 11 0 1 14 1 5 14 8 12 4 1 0 12 1 0 65 chain 8648 chr10 133797422 + 130276510 130276859 MER65C 458 + 0 352 73357 77 219 223 14 1 0 38 chain 44525 chr10 133797422 + 130290808 130291322 MER9a3 513 + 0 513 31816 19 1 0 494 chain 395949 chr10 133797422 + 130292626 130297285 HERVK9-int 4720 + 36 4720 5215 13 8 5 4 1 0 53 0 1 4 1 0 8 1 0 8 1 0 30 1 0 11 5 6 370 0 3 666 0 1 366 0 2 253 13 4 955 0 1 137 0 15 74 0 4 22 0 4 45 0 1 196 11 5 973 0 11 325 0 4 104 chain 41198 chr10 133797422 + 130297285 130297789 MER9a3 513 + 0 513 33843 13 7 0 19 0 12 154 10 14 301 chain 88325 chr10 133797422 + 130321244 130322251 LTR13 1007 + 0 1007 19981 305 1 0 76 4 5 621 chain 61074 chr10 133797422 + 130356222 130356977 LTR17 781 + 2 779 26089 6 0 1 318 1 0 93 3 4 108 2 1 162 5 27 57 chain 24942 chr10 133797422 + 130397348 130398036 THE1A 353 + 0 353 49365 111 1 0 49 0 1 37 1 0 27 353 19 109 chain 41574 chr10 133797422 + 130523401 130523947 MLT2A2 560 + 0 560 33643 360 0 1 35 25 38 126 chain 129999 chr10 133797422 + 130536725 130538304 L1PA7 6471 + 4890 6469 14039 1241 0 1 326 1 0 11 chain 80389 chr10 133797422 + 130627956 130628919 LTR5_Hs 974 + 0 974 21551 17 0 4 267 0 1 178 0 1 351 8 15 31 8 6 103 chain 164563 chr10 133797422 + 130650760 130652551 L1PA2 6032 + 4224 6014 11451 1656 4 3 131 chain 10317 chr10 133797422 + 130738919 130739048 MSTA 426 + 282 416 69772 14 0 5 115 chain 40191 chr10 133797422 + 130972250 130973020 MER9a2 513 + 0 513 34524 165 281 23 145 0 2 86 0 1 34 2 0 57 chain 9872 chr10 133797422 + 131050191 131050303 LTR7B 505 + 393 505 70680 112 chain 35796 chr10 133797422 + 131156496 131156950 LTR2 463 + 0 463 37529 255 1 0 105 16 17 52 1 10 24 chain 34410 chr10 133797422 + 131293334 131293791 LTR19A 502 + 0 502 38422 34 1 0 50 0 14 86 0 37 80 1 0 127 4 0 74 chain 13894 chr10 133797422 + 131302376 131302609 MER4E1 777 + 82 316 63747 29 2 0 6 0 2 53 2 1 10 1 2 33 27 28 70 chain 5063 chr10 133797422 + 131335881 131335939 MLT1A 405 + 25 83 85338 58 chain 7098 chr10 133797422 + 131341284 131341373 MLT1B 390 + 283 372 77268 89 chain 12093 chr10 133797422 + 131542416 131542578 MSTA 426 + 244 426 66677 52 1 21 109 chain 25751 chr10 133797422 + 131600797 131601227 L1PA14 3548 + 3035 3456 48092 53 0 1 19 10 6 17 2 0 6 1 0 84 4 3 79 1 0 24 9 8 6 4 0 22 0 1 4 5 11 8 1 0 11 4 3 13 1 0 42 chain 132945 chr10 133797422 + 131660978 131662481 L1PA5 6144 + 4624 6128 13744 1364 1 0 6 2 4 130 chain 151602 chr10 133797422 + 131704548 131706170 L1HS 6032 + 4409 6031 12249 1622 chain 23174 chr10 133797422 + 131717522 131718051 L1PA15 4387 + 3845 4351 52113 20 0 4 19 2 0 25 6 1 18 1 0 103 2 1 55 61 59 24 12 11 23 14 9 40 16 13 7 1 0 4 0 1 20 34 27 22 chain 24802 chr10 133797422 + 131756004 131756318 PABL_A 660 + 332 640 49589 292 6 0 16 chain 77821 chr10 133797422 + 131987411 131988297 L1PA5 6144 + 5234 6132 22138 58 0 7 512 2 0 176 4 11 134 chain 46006 chr10 133797422 + 131999686 132000845 MER4E1 777 + 0 672 31060 24 0 1 244 6 1 40 358 49 46 0 1 132 3 0 7 41 20 71 151 0 36 chain 54618 chr10 133797422 + 132002343 132003066 MER4E1 777 + 0 777 28004 17 0 1 42 0 14 182 0 11 49 8 12 214 1 10 40 0 13 44 1 2 40 0 1 85 chain 5806 chr10 133797422 + 132011528 132011634 MER41-int 2638 + 112 213 81894 53 23 18 30 chain 27768 chr10 133797422 + 132215326 132215686 THE1B 368 + 0 368 45231 172 5 4 24 0 9 159 chain 119966 chr10 133797422 + 132215686 132217550 THE1B-int 1605 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6138 40727 211 0 7 143 chain 40888 chr10 133797422 + 133004174 133004613 LTR7Y 441 + 0 441 34034 343 0 2 96 chain 55025 chr10 133797422 + 133035085 133035826 MER4E 760 + 8 760 27869 143 22 25 86 0 1 13 0 5 251 2 4 78 4 3 16 0 1 126 chain 26890 chr10 133797422 + 133143748 133144131 LTR13 1007 + 0 377 46424 60 10 8 180 12 13 5 3 0 5 2 0 106 chain 221027 chr10 133797422 + 133146578 133149787 L1PA14 3548 + 90 3453 9015 52 1 0 6 3 0 69 1 0 20 33 31 28 0 4 203 7 4 37 7 6 50 0 2 39 1 3 41 1 4 35 0 2 208 6 4 17 1 2 49 0 4 171 0 7 211 14 20 5 0 1 64 0 1 13 0 1 6 1 5 91 0 1 379 0 108 127 0 48 7 0 7 10 1 0 240 0 1 155 1 0 171 0 2 58 2 0 18 3 1 14 2 0 27 9 1 19 9 5 100 13 9 17 2 0 6 1 0 31 6 7 41 38 36 79 1 0 11 5 1 36 4 2 10 9 7 17 1 0 38 chain 74113 chr10 133797422 + 133304588 133305598 LTR13 1007 + 0 1007 23062 60 10 8 312 5 6 60 1 2 180 2 1 20 0 1 9 20 4 22 1 2 7 0 13 196 0 1 64 10 8 31 chain 69140 chr10 133797422 + 133313699 133314686 LTR13 1007 + 4 1007 24188 60 20 19 39 0 2 255 11 12 237 2 1 54 0 15 18 8 0 8 6 6 82 9 10 11 0 4 71 0 5 35 37 35 24 chain 80054 chr10 133797422 + 133321804 133322761 LTR13A 966 + 2 966 21615 83 1 0 43 0 1 283 0 2 85 7 12 455 chain 81069 chr10 133797422 + 133367196 133368154 LTR13A 966 + 0 966 21419 128 0 1 283 0 2 85 7 12 455 chain 70797 chr10 133797422 + 133396549 133397473 LTR13 1007 + 0 935 23806 69 10 8 89 3 0 9 4 7 66 15 23 110 4 5 242 2 1 57 0 4 10 0 1 234 chain 51586 chr10 133797422 + 133417154 133417739 L1P1 4361 + 3758 4341 28999 176 0 1 215 1 0 155 1 0 23 2 1 12 chain 34322 chr10 133797422 + 133469348 133469751 L1PA7 6471 + 6065 6466 38478 394 2 0 7 chain 81095 chr10 133797422 + 133505361 133506240 L1PA2 6032 + 3250 4129 21415 879 chain 227965 chr10 133797422 + 133546649 133549798 L1PA10 4194 + 199 4150 8809 7 2 0 10 8 4 12 3 1 8 1 0 4 9 8 18 1 0 15 1 0 8 4 0 4 20 0 7 2 1 7 1 0 22 2 0 18 1 0 10 1 0 8 1 0 9 1 0 15 7 0 8 1 0 75 1 0 6 1 0 4 6 5 174 2 563 325 0 3 259 1 2 235 0 1 191 7 11 205 1 0 73 4 302 104 22 15 452 0 1 4 1 0 181 31 0 8 0 31 119 1 0 164 0 2 27 2 1 170 3 0 34 chain 545384 chr10 133797422 + 133580560 133586707 L1PA4 6152 + 6 6151 1014 351 0 1 76 1 0 4 7 6 16 6 0 120 1 0 581 0 3 72 0 1 1871 0 1 550 1 0 1245 0 4 169 7 1 220 0 4 849 chain 3047 chr10 133797422 + 133599087 133599119 MLT2B4 540 + 506 538 99359 32 chain 47137 chr10 133797422 + 133603539 133604151 LTR14B 630 + 9 622 30597 212 1 0 7 5 6 157 0 9 24 14 6 192 chain 47669 chr10 133797422 + 133609354 133609963 LTR14B 630 + 10 624 30411 381 0 9 36 8 0 115 6 10 63 chain 88134 chr10 133797422 + 133609963 133611180 LTR5A 1029 + 0 1029 20024 128 14 0 19 1 0 804 175 2 76 chain 15075 chr10 133797422 + 133610940 133611104 LTR5A 1029 + 787 951 62179 164 chain 28261 chr10 133797422 + 133650904 133651243 LTR17 781 + 445 781 44468 325 1 0 4 2 0 7 chain 3268 chr10 133797422 + 133779708 133779749 MLT2B3 573 + 2 43 97311 41 chain 23052 chr11 135086622 + 70227 70536 L1PA8A 6298 + 5870 6175 52291 129 9 9 126 4 0 41 chain 511925 chr11 135086622 + 76846 83269 L1PA7 6471 + 0 6468 2668 196 3 2 63 2 3 148 11 7 141 1 8 59 7 8 20 1 0 4 0 1 228 20 14 530 5 0 265 0 1 243 0 1 458 2 3 229 0 1 450 3 1 12 0 4 299 0 7 6 13 11 61 8 8 5 3 0 187 3 7 144 1 0 165 4 2 95 0 1 251 0 5 128 0 35 125 0 2 55 2 0 191 1 2 462 1 0 251 0 1 12 1 0 17 7 11 423 1 0 246 1 2 142 2 0 9 chain 85475 chr11 135086622 + 149105 150168 MER11C 1089 + 0 1089 20540 220 0 5 39 12 15 40 1 18 49 0 1 199 12 13 477 1 0 13 chain 15813 chr11 135086622 + 341491 341755 MSTA 426 + 6 296 61268 94 28 56 79 24 22 39 chain 60264 chr11 135086622 + 347588 349098 MER41-int 2638 + 1162 2091 26304 61 0 1 39 0 5 22 309 14 22 4 5 15 0 5 106 9 20 15 1 5 168 0 1 37 337 29 143 2 0 35 13 9 172 chain 4357 chr11 135086622 + 386523 386597 MER52D 1964 + 1131 1207 89129 18 13 15 43 chain 4744 chr11 135086622 + 513845 513899 Tigger1 2417 + 2083 2137 86995 54 chain 106286 chr11 135086622 + 516873 518173 SVA_A 1864 + 26 1856 17527 487 1 565 68 1 0 39 40 0 32 5 8 346 0 2 276 0 2 5 chain 76643 chr11 135086622 + 573666 574603 LTR13A 966 + 0 966 22407 76 0 4 74 1 4 303 1 0 38 0 5 227 0 4 122 1 0 8 0 4 11 5 17 47 1 0 22 chain 4904 chr11 135086622 + 878576 878632 MSTC 436 + 368 424 86135 56 chain 3456 chr11 135086622 + 958233 958269 MLT1A 405 + 249 285 95585 36 chain 43985 chr11 135086622 + 1210006 1210516 MER9a3 513 + 0 513 32137 110 0 1 343 0 2 57 chain 24781 chr11 135086622 + 1217759 1218052 AluSc 308 + 5 298 49617 293 chain 3194 chr11 135086622 + 1354707 1354743 MER63A 208 + 102 138 97948 36 chain 7991 chr11 135086622 + 1358723 1358880 L1PB1 5432 + 5207 5346 74904 13 2 1 16 1 0 44 1 0 15 4 0 15 8 0 16 3 1 4 1 0 14 chain 4267 chr11 135086622 + 1614975 1615057 L1MD1 2063 + 1564 1638 89724 35 1 8 7 15 0 24 chain 73534 chr11 135086622 + 1643668 1644667 LTR13 1007 + 0 1007 23212 65 4 0 8 6 4 272 50 51 286 1 15 110 6 7 143 0 2 6 2 0 6 3 1 31 chain 49830 chr11 135086622 + 1703720 1704268 L1PA5 6144 + 5580 6128 29625 548 chain 3552 chr11 135086622 + 1719938 1719978 MADE1 96 + 52 92 94830 40 chain 10946 chr11 135086622 + 1769786 1769926 LTR8 732 + 586 732 68623 63 1 7 76 chain 6535 chr11 135086622 + 2226179 2226305 L1PA16 3655 + 2805 2930 79213 15 11 12 56 11 10 24 1 0 8 chain 6608 chr11 135086622 + 2321733 2321827 U6 107 + 16 107 78955 43 4 1 47 chain 117718 chr11 135086622 + 2321827 2323416 L1PA11 4918 + 3008 4578 15935 146 1 0 231 2 16 264 0 1 662 14 0 13 1 0 52 13 14 60 7 5 15 1 0 21 4 0 9 8 3 10 23 19 5 1 0 13 2 0 11 chain 116618 chr11 135086622 + 2331785 2333494 SVA_B 1603 + 49 1603 16118 139 0 10 329 40 0 145 0 40 39 40 0 93 18 50 27 54 0 12 2 0 8 1 0 37 86 0 12 1 0 73 6 9 151 3 1 230 8 0 132 9 3 14 chain 4156 chr11 135086622 + 2332769 2332855 SVA_B 1603 + 854 895 76945 10 38 0 20 17 10 1 chain 5311 chr11 135086622 + 2335063 2335124 LTR10E 629 + 22 83 84148 61 chain 47246 chr11 135086622 + 2338513 2339998 LTR10C 591 + 0 591 30554 29 1 0 221 437 0 43 0 4 68 460 0 226 chain 37835 chr11 135086622 + 2339318 2339771 LTR7 482 + 0 482 36181 56 2 0 198 1 0 4 4 36 188 chain 9054 chr11 135086622 + 2372637 2372748 HY1 111 + 0 111 72434 111 chain 23872 chr11 135086622 + 2417175 2417460 AluSc8 310 + 6 290 50992 125 1 0 159 chain 22184 chr11 135086622 + 2475672 2476001 THE1B 368 + 29 367 53592 15 4 20 108 15 14 13 4 0 94 1 0 21 1 0 53 chain 10417 chr11 135086622 + 2500014 2500161 L1MA3 4352 + 933 1076 69576 17 5 1 125 chain 67277 chr11 135086622 + 2500211 2501013 L1PA7 6471 + 5647 6450 24627 26 2 1 250 1 2 394 0 1 129 chain 2820 chr11 135086622 + 2595411 2595441 Tigger1 2417 + 54 84 101528 30 chain 69516 chr11 135086622 + 2906061 2906871 L1PA6 6164 + 5346 6161 24117 244 0 1 261 1 5 159 1 2 4 1 0 139 chain 83628 chr11 135086622 + 3027445 3028451 LTR13 1007 + 0 1007 20885 305 1 0 76 2 3 301 0 2 125 0 1 143 22 20 31 chain 36652 chr11 135086622 + 3063250 3063705 THE1A-int 1579 + 1112 1565 36982 17 5 3 147 2 1 4 0 1 280 chain 4222 chr11 135086622 + 3075817 3075864 MER4E 760 + 27 74 89991 47 chain 33484 chr11 135086622 + 3110562 3110996 MER4A1 472 + 0 470 39099 10 0 4 7 0 1 7 1 0 24 3 2 165 0 1 11 0 21 74 0 9 30 0 2 102 chain 209272 chr11 135086622 + 3115178 3118157 MER4-int 2692 + 1 2687 9374 14 1 0 21 2 0 53 0 1 9 2 0 6 9 10 10 1 0 196 0 6 228 0 10 47 1 7 13 0 1 21 0 3 68 7 1 144 0 4 17 6 0 28 0 1 22 1 0 188 0 1 270 315 0 75 1 7 639 0 1 153 2 0 6 0 2 403 chain 32214 chr11 135086622 + 3118165 3118925 MER4A1 472 + 0 472 40171 14 0 2 70 2 1 143 3 25 141 8 10 9 313 0 57 chain 10730 chr11 135086622 + 3154801 3154917 L1PA5 6144 + 6019 6135 68989 116 chain 41258 chr11 135086622 + 3251240 3251798 LTR10A 586 + 0 586 33812 141 2 0 5 0 1 55 9 39 40 1 2 220 8 6 77 chain 7567 chr11 135086622 + 3274884 3275020 MER57B2 428 + 12 148 75940 66 1 29 10 28 0 31 chain 41166 chr11 135086622 + 3297043 3297601 LTR10A 586 + 0 586 33864 141 2 0 5 0 1 55 9 39 40 1 2 220 8 6 77 chain 7342 chr11 135086622 + 3320703 3320839 MER57B2 428 + 12 148 76543 66 1 29 10 28 0 31 chain 78598 chr11 135086622 + 3397121 3398089 SVA_E 1901 + 279 1901 21955 50 11 8 118 9 239 123 1 0 25 0 1 9 4 431 618 chain 29536 chr11 135086622 + 3398784 3399193 LTR7 482 + 0 482 42566 69 8 46 109 3 4 27 5 37 100 0 2 88 chain 2876 chr11 135086622 + 3503605 3503638 MLT1I 406 + 367 400 101027 33 chain 75864 chr11 135086622 + 3519475 3520554 MER11A 1151 + 0 1144 22623 55 0 99 76 1 0 64 4 0 149 0 1 94 0 1 145 5 6 147 24 0 10 8 15 21 18 0 37 0 1 60 30 32 131 chain 32627 chr11 135086622 + 3544473 3544915 HERVK-int 6823 + 5138 5581 39835 21 0 1 4 4 3 105 0 3 198 1 0 4 0 1 36 1 0 9 5 4 54 chain 87410 chr11 135086622 + 3545351 3546375 LTR5A 1029 + 0 1029 20156 150 1 0 40 0 1 592 0 3 181 0 2 60 chain 22946 chr11 135086622 + 3558870 3559157 AluY 311 + 11 297 52451 270 1 0 16 chain 19348 chr11 135086622 + 3570688 3570948 L1PA8 5853 + 5586 5841 57181 20 6 4 69 1 0 61 2 1 19 1 0 81 chain 11649 chr11 135086622 + 3573900 3574051 L1MA8 2339 + 1934 2082 67483 20 2 0 55 1 0 73 chain 108991 chr11 135086622 + 3588544 3589940 LTR12C 1709 + 0 1709 17185 259 1 2 29 7 8 40 0 43 83 0 3 183 0 278 184 1 0 4 4 2 100 1 0 6 11 4 333 1 0 66 1 0 82 chain 24812 chr11 135086622 + 3647948 3648306 LTR7 482 + 0 482 49569 63 0 89 72 8 40 25 5 6 124 12 14 49 chain 295804 chr11 135086622 + 3648308 3651973 HERVH-int 3825 + 0 3825 6954 535 13 8 27 1 0 10 1 0 24 28 0 14 1 0 13 21 18 47 2 1 82 1 0 60 1 4 258 0 2 123 15 0 205 9 0 9 0 2 10 0 2 15 2 1 1600 14 19 30 0 210 73 0 1 163 2 1 31 0 2 225 chain 28014 chr11 135086622 + 3653227 3653636 LTR7 482 + 0 482 44844 69 8 46 109 8 9 25 5 37 124 12 14 49 chain 7477 chr11 135086622 + 3692046 3692148 U13 108 + 6 108 76181 34 0 2 5 2 0 61 chain 3972 chr11 135086622 + 3781394 3781441 U7 62 + 0 47 91623 47 chain 8133 chr11 135086622 + 3793161 3793258 Charlie1a 1436 + 1002 1099 74554 97 chain 31861 chr11 135086622 + 3999596 4000000 L1P1 4361 + 1 401 40450 215 5 1 184 chain 521573 chr11 135086622 + 4000000 4005739 L1PA3long 6157 + 405 6157 2205 302 0 1 3381 0 1 216 3 1 337 0 5 660 1 5 508 0 3 133 0 1 198 chain 29581 chr11 135086622 + 4018167 4018486 AluYb8 318 + 0 316 42504 132 3 0 184 chain 170464 chr11 135086622 + 4051815 4053741 L1PA5 6144 + 4191 6144 11085 472 0 19 449 5 5 155 0 8 845 chain 89638 chr11 135086622 + 4159083 4160071 L1PA3long 6157 + 5165 6157 19740 145 0 4 843 chain 21781 chr11 135086622 + 4218238 4218493 L1PA6 6164 + 5891 6146 54118 255 chain 107873 chr11 135086622 + 4237202 4238594 SVA_B 1603 + 52 1603 17344 452 77 0 123 16 53 25 2 42 31 5 85 10 9 5 28 0 1 17 4 86 593 chain 8378 chr11 135086622 + 4243668 4243769 MER6 865 + 574 675 73951 101 chain 426979 chr11 135086622 + 4263628 4268498 L1PA4 6152 + 1262 6143 4788 1903 1 0 351 3 1 863 0 1 649 0 9 48 0 11 890 7 0 155 chain 21301 chr11 135086622 + 4274239 4274497 L1PREC2 3366 + 469 727 54764 258 chain 21027 chr11 135086622 + 4275091 4275355 L1PA5 6144 + 5855 6122 55085 7 0 5 119 4 0 9 4 6 121 chain 99454 chr11 135086622 + 4282600 4284031 SVA_A 1864 + 27 1864 18358 17 5 0 50 0 11 71 2 1 401 0 2 24 16 310 36 2 0 34 43 0 46 95 11 53 13 231 20 9 25 494 chain 4928 chr11 135086622 + 4289412 4289470 MER6 865 + 617 675 86006 58 chain 83242 chr11 135086622 + 4306175 4307520 L1MA2 4263 + 2741 4058 20976 34 2 0 125 0 4 287 1 0 6 0 1 17 14 1 14 13 6 241 0 1 8 7 8 31 66 61 76 31 19 99 2 0 5 22 21 91 34 43 18 1 0 6 2 1 81 0 1 11 chain 20709 chr11 135086622 + 4314651 4314898 L1PA6 6164 + 5899 6146 55483 247 chain 19709 chr11 135086622 + 4316799 4317016 AluYb8 318 + 104 316 56773 22 5 0 190 chain 4928 chr11 135086622 + 4340574 4340632 MER6 865 + 617 675 86005 58 chain 90812 chr11 135086622 + 4357362 4358784 L1MA2 4263 + 2741 4106 19533 28 2 0 139 0 4 279 1 0 6 0 1 17 30 21 289 66 61 15 0 1 60 28 16 102 2 0 5 22 21 152 1 0 6 2 1 81 0 1 11 31 0 11 2 3 34 chain 3884 chr11 135086622 + 4396785 4396826 L1P1 4361 + 1256 1297 92257 41 chain 182477 chr11 135086622 + 4407050 4409319 L1PA7 6471 + 4188 6467 10472 13 0 1 55 0 1 157 0 4 539 0 5 20 7 8 214 6 0 143 1 0 76 0 1 80 4 0 97 8 16 45 14 2 105 1 6 100 0 11 405 5 6 154 5 0 15 chain 4174 chr11 135086622 + 4478140 4478395 MLT1B-int 1170 + 533 719 90307 38 193 124 24 chain 5349 chr11 135086622 + 4528473 4528544 L1MA2 4263 + 3957 4027 83960 9 1 0 61 chain 477803 chr11 135086622 + 4531437 4537858 L1PA6 6164 + 0 6161 3677 216 2 0 25 28 29 99 0 8 10 17 16 97 11 10 282 17 0 206 0 6 142 0 2 92 1 2 86 0 1 20 23 24 50 5 8 15 1 0 136 0 3 68 1 0 203 0 4 238 0 1 113 0 2 111 0 5 111 0 3 79 1 5 248 0 2 309 0 2 7 0 4 89 7 2 31 2 0 53 339 8 164 0 1 172 0 4 76 3 4 219 23 23 63 0 5 111 1 0 208 0 1 34 0 2 106 1 2 4 1 0 234 0 3 275 1 5 18 6 18 8 1 0 253 11 12 94 4 15 91 5 9 485 1 4 148 2 0 7 chain 400722 chr11 135086622 + 4559733 4565421 L1PA8 5853 + 52 5847 5143 20 3 1 9 1 2 11 50 14 58 4 9 45 0 2 7 1 0 4 0 1 14 22 23 30 16 6 106 2 0 182 0 4 37 3 0 5 16 24 15 0 2 90 0 3 105 0 3 128 0 1 36 22 21 18 0 2 22 2 0 244 0 3 144 13 15 28 0 4 10 5 7 35 2 5 171 0 3 125 0 4 108 0 2 68 1 5 15 23 17 113 0 3 57 0 4 74 0 5 98 5 13 43 0 4 87 0 3 28 3 5 156 0 3 36 0 4 27 34 30 16 1 5 13 2 0 5 0 10 20 6 11 77 0 4 13 0 1 77 1 0 134 1 4 58 1 0 21 0 2 94 1 0 56 6 0 106 0 1 18 1 4 28 1 4 11 3 8 45 2 1 101 0 2 16 4 8 12 0 2 287 3 5 144 0 3 53 27 12 118 0 2 29 7 6 148 0 29 107 0 1 11 1 0 31 0 3 46 0 1 42 0 4 17 3 4 43 1 4 21 14 22 267 1 0 155 0 3 38 1 0 25 0 2 19 2 0 10 4 8 49 5 4 10 1 0 51 7 6 12 0 2 16 14 0 34 0 10 21 0 1 5 chain 4268 chr11 135086622 + 4603696 4603747 MER5A1 166 + 24 75 89719 51 chain 35114 chr11 135086622 + 4621108 4621488 L1PA2 6032 + 5652 6032 37947 380 chain 69648 chr11 135086622 + 4629793 4630651 L1PA8 5853 + 1618 2471 24086 49 11 14 178 1 2 47 0 9 101 16 0 133 2 0 320 chain 191244 chr11 135086622 + 4630652 4633113 L1PA8 5853 + 3526 5847 10057 158 5 1 258 144 0 391 0 1 473 0 1 4 1 0 141 0 1 50 1 4 207 0 9 339 1 0 44 2 0 65 25 23 48 1 0 103 chain 3331 chr11 135086622 + 4674613 4674716 L1MA10 1535 + 1413 1500 96753 31 52 36 20 chain 39275 chr11 135086622 + 4741249 4741757 L1PA8A 6298 + 5777 6290 35166 54 0 1 146 5 8 180 3 4 13 0 1 4 1 0 102 chain 26544 chr11 135086622 + 4781305 4781583 AluYb8 318 + 40 318 46903 278 chain 22361 chr11 135086622 + 4783637 4783983 THE1B 368 + 0 345 53331 13 2 0 30 0 5 71 0 1 56 24 17 46 10 13 42 1 0 51 chain 23473 chr11 135086622 + 4807334 4807604 L1PA6 6164 + 5722 5992 51628 270 chain 14104 chr11 135086622 + 4807606 4807767 L1PA6 6164 + 5993 6154 63446 161 chain 18231 chr11 135086622 + 4845483 4845729 L1MA1 4479 + 3903 4142 58428 44 1 0 5 3 0 126 1 0 29 2 0 35 chain 375379 chr11 135086622 + 4854100 4858577 L1P2 5180 + 2 4500 5565 137 16 15 93 1 0 260 1 0 8 1 0 272 1 0 6 1 0 133 1 26 353 3 2 703 0 1 1166 1 0 5 3 1 109 0 1 1061 0 4 142 chain 66615 chr11 135086622 + 4866450 4867380 L1PA11 4918 + 3537 4465 24793 299 5 0 7 17 22 183 2 1 6 0 2 271 5 0 67 1 0 12 2 0 29 7 12 17 chain 148775 chr11 135086622 + 4868243 4869953 L1PA5 6144 + 4157 5865 12438 290 0 1 505 0 1 822 4 0 89 chain 11799 chr11 135086622 + 4950327 4950491 L1MA7 2200 + 1802 1962 67209 26 2 0 121 2 0 13 chain 46724 chr11 135086622 + 5030553 5031126 LTR22 571 + 0 571 30761 78 1 0 204 4 3 286 chain 6616 chr11 135086622 + 5043029 5043159 Tigger1 2417 + 2191 2323 78917 21 37 39 72 chain 4572 chr11 135086622 + 5126395 5126475 L1PA15 4387 - 907 968 87958 9 19 0 52 chain 109436 chr11 135086622 + 5144231 5145619 LTR12C 1709 + 0 1709 17124 325 23 0 11 0 43 87 4 0 5 0 3 176 0 278 184 1 0 4 4 2 106 0 4 13 1 0 57 4 24 83 0 4 43 0 1 168 5 4 84 chain 140216 chr11 135086622 + 5182472 5184082 L1PA5 6144 + 1877 3492 13084 52 0 4 380 1 0 395 1 3 781 chain 41892 chr11 135086622 + 5194541 5194996 L1PA3long 6157 + 5702 6157 33426 455 chain 169445 chr11 135086622 + 5261298 5263375 L1PA7 6471 + 4382 6461 11130 35 1 3 159 0 3 141 5 0 66 4 0 397 7 11 207 0 1 94 0 2 119 7 6 510 1 2 13 0 1 62 1 0 107 2 1 139 chain 3734 chr11 135086622 + 5276371 5276411 L1PA7 6471 + 6267 6307 93365 40 chain 8782 chr11 135086622 + 5276412 5276505 L1PA7 6471 + 6309 6402 73035 93 chain 391386 chr11 135086622 + 5355904 5360338 L1PA4 6152 + 910 5338 5298 4 1 0 11 0 4 110 0 1 1108 0 1 414 15 0 608 1 0 994 0 1 1138 0 4 30 chain 541534 chr11 135086622 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chr11 135086622 + 5569284 5569686 L1P3 4156 + 0 400 40081 251 2 1 68 1 0 80 chain 107914 chr11 135086622 + 5589696 5591016 LTR12C 1709 + 0 1709 17338 300 0 1 160 13 13 176 0 278 80 0 4 100 12 9 103 0 4 168 0 102 123 7 6 51 0 4 27 chain 111548 chr11 135086622 + 5655824 5657454 L1PA7 6471 + 5126 6454 16874 69 0 4 422 0 3 28 310 0 653 5 6 143 chain 6566 chr11 135086622 + 5658712 5658789 L1PA8 5853 - 460 537 79096 77 chain 121421 chr11 135086622 + 5676245 5677564 L1PA2 6032 + 4156 5479 15272 333 0 4 986 chain 106845 chr11 135086622 + 5682764 5684181 LTR12C 1709 + 0 1709 17454 291 4 5 40 0 43 85 5 2 5 0 3 68 0 1 23 19 14 29 0 1 27 0 1 4 2 1 57 0 159 249 1 0 9 3 1 29 0 1 76 11 4 108 2 1 4 0 1 97 0 1 16 0 101 61 8 7 84 chain 19560 chr11 135086622 + 5703792 5704176 L1PA16 3655 + 2893 3276 56944 6 2 0 201 117 118 58 chain 92302 chr11 135086622 + 5714687 5715803 L1PA8 5853 + 3038 4155 19301 604 1 2 511 chain 3944 chr11 135086622 + 5766508 5766595 L1MB7 1623 + 1060 1148 91799 26 28 29 33 chain 18542 chr11 135086622 + 5811967 5812183 L1PA8A 6298 + 6074 6290 58055 216 chain 118878 chr11 135086622 + 5825721 5827265 THE1B-int 1605 + 18 1599 15730 112 0 1 158 3 5 40 1 3 93 0 25 48 7 6 151 17 16 63 5 6 168 0 10 161 2 0 515 chain 20880 chr11 135086622 + 5827271 5827625 THE1B 368 + 0 368 55279 47 33 38 87 2 1 25 35 45 125 chain 51173 chr11 135086622 + 5829676 5830251 L1PA4 6152 + 5578 6152 29172 569 1 0 5 chain 15228 chr11 135086622 + 5836016 5836191 L1PA6 6164 + 5556 5731 62004 175 chain 27456 chr11 135086622 + 5848056 5848446 L1PA8 5853 + 5470 5853 45629 51 1 0 43 1 0 27 0 4 13 2 0 74 1 0 6 20 16 36 5 4 16 1 0 93 chain 30278 chr11 135086622 + 5885789 5886167 MLT2A1 477 + 0 377 41784 169 4 1 89 0 2 116 chain 334391 chr11 135086622 + 5914493 5918448 L1HS 6032 + 12 3980 6151 116 14 0 13 0 13 102 1 0 277 1 10 35 9 10 743 0 1 252 0 3 990 1 6 478 1 0 771 3 0 148 chain 75264 chr11 135086622 + 5918866 5919819 L1P1 4361 + 19 1482 22740 18 3 5 48 0 525 213 17 0 654 chain 159682 chr11 135086622 + 5919819 5921584 L1PA4 6152 + 4112 5881 11769 129 1 0 397 0 5 1238 chain 53552 chr11 135086622 + 5925421 5926312 L1PA11 4918 + 3781 4629 28376 128 0 3 289 0 1 72 8 0 57 1 0 3 4 0 49 13 12 79 2 0 9 86 71 13 2 0 11 8 2 7 1 0 7 1 0 4 19 13 18 chain 38475 chr11 135086622 + 5928347 5928772 HERV-Fc1_LTR2 425 + 0 425 35738 425 chain 222821 chr11 135086622 + 5929851 5933737 HERV-Fc2-int 3928 + 174 3928 8961 710 74 68 67 78 0 480 146 137 1853 244 205 234 chain 106919 chr11 135086622 + 5934034 5935235 SVA_F 1814 + 0 1812 17444 647 0 613 85 0 1 449 3 0 17 chain 225413 chr11 135086622 + 5935247 5937929 HERV-Fc1-int 4575 + 1935 4575 8874 119 31 0 473 0 1 334 44 0 42 0 1 243 44 65 188 1 3 795 0 5 43 1 5 50 1 0 273 chain 39195 chr11 135086622 + 5937929 5938354 HERV-Fc1_LTR2 425 + 0 425 35221 425 chain 129406 chr11 135086622 + 5960235 5961764 SVA_B 1603 + 0 1603 14103 20 5 0 12 7 9 553 4 0 200 2 40 101 0 41 83 2 1 97 0 3 443 chain 39141 chr11 135086622 + 6037026 6037716 L1PA15 4387 + 3657 4327 35256 156 2 0 20 3 0 49 4 8 17 1 0 19 10 9 88 15 13 64 10 9 22 1 0 50 11 8 18 4 0 10 1 0 39 36 33 25 3 1 12 chain 9462 chr11 135086622 + 6078037 6078338 HERVK11-int 2540 + 678 943 71579 52 43 33 9 2 0 21 61 41 44 38 34 31 chain 41875 chr11 135086622 + 6081107 6081734 L1MA1 4479 + 3532 4162 33440 177 6 5 25 2 0 16 1 0 71 1 0 11 10 8 14 1 0 88 1 0 5 3 0 122 5 4 29 2 0 5 0 20 10 2 1 8 1 0 11 chain 40018 chr11 135086622 + 6087523 6087968 L1PA4 6152 + 4951 5392 34646 375 4 0 66 chain 240623 chr11 135086622 + 6116301 6119672 L1PA10 4194 + 183 3529 8458 18 3 0 6 2 0 9 23 34 21 2 0 15 78 49 21 1 0 5 6 5 8 1 0 6 1 0 15 7 0 8 2 1 80 2 0 273 14 9 49 4 1 7 0 3 100 7 6 267 9 11 190 44 48 185 0 1 230 9 5 90 0 2 54 0 4 113 0 1 85 5 12 388 5 6 79 0 3 26 0 2 226 1 0 176 1 0 222 2 1 170 chain 256350 chr11 135086622 + 6119733 6122902 L1PA2 6032 + 3181 6032 8077 637 0 1 765 320 0 593 1 2 687 5 0 7 8 13 146 chain 27967 chr11 135086622 + 6136134 6136494 L1PA6 6164 + 5817 6162 44923 319 19 4 22 chain 522925 chr11 135086622 + 6143657 6149454 L1PA3long 6157 + 10 5947 2140 142 0 1 628 0 128 1019 0 1 1899 0 1 106 0 1 8 0 1 554 0 4 809 1 4 631 chain 14477 chr11 135086622 + 6172957 6173111 L1HS 6032 + 5876 6030 62922 154 chain 108267 chr11 135086622 + 6179151 6180439 L1P1 4361 + 4 1314 17179 111 6 20 595 1 0 199 0 7 112 5 7 259 chain 133995 chr11 135086622 + 6180439 6181960 L1PA5 6144 + 4623 6142 13656 671 6 5 696 1 0 147 chain 555153 chr11 135086622 + 6185350 6191366 L1PA2 6032 + 4 6022 399 5130 2 0 48 0 4 836 chain 16557 chr11 135086622 + 6248530 6248737 L1PB2 3958 + 3633 3836 60302 46 1 0 70 2 0 26 1 0 61 chain 33080 chr11 135086622 + 6277996 6278586 L1MA3 4352 + 3762 4352 39454 128 3 0 43 4 0 7 3 12 138 43 14 10 0 5 13 1 3 44 1 0 21 6 16 13 2 1 4 0 1 25 2 0 22 1 0 5 5 4 15 9 24 22 chain 38349 chr11 135086622 + 6280782 6281271 LTR6B 557 + 0 544 35815 20 0 27 25 0 15 155 1 15 36 0 2 64 0 1 41 3 0 81 1 0 11 1 0 7 0 1 43 chain 160340 chr11 135086622 + 6285603 6288192 MER41-int 2638 + 85 2634 11732 18 18 9 58 41 26 17 4 1 34 1 0 5 17 6 32 4 0 78 9 18 7 10 0 58 0 1 5 3 1 60 23 25 112 5 0 3 6 0 68 0 2 73 7 21 117 4 3 32 67 88 25 6 5 54 5 6 24 1 0 42 1 0 44 5 10 12 36 38 16 10 4 37 0 1 165 0 2 148 25 0 182 2 0 22 21 19 46 1 6 11 5 0 49 0 2 421 0 1 107 1 2 39 0 1 30 chain 45105 chr11 135086622 + 6288203 6288753 MER41A 554 + 0 548 31525 262 1 0 145 1 0 141 chain 36919 chr11 135086622 + 6345970 6346408 LTR2 463 + 0 460 36797 162 7 27 75 0 1 153 0 1 41 chain 3953 chr11 135086622 + 6360856 6360899 MER50 708 + 640 683 91746 43 chain 4454 chr11 135086622 + 6361472 6361529 MER5C 305 + 68 125 88585 57 chain 26095 chr11 135086622 + 6366027 6366431 LTR7 482 + 0 475 47581 68 30 18 15 15 14 17 0 51 41 5 37 44 0 1 169 chain 283463 chr11 135086622 + 6366441 6370043 HERVH-int 3825 + 0 3825 7330 157 2 1 85 0 5 85 2 1 30 15 16 95 13 15 40 1 0 15 3 212 22 1 0 260 0 4 37 12 13 126 1 0 4 7 0 146 0 1 62 11 1 24 0 3 10 1 0 102 5 0 434 0 4 82 4 9 279 37 38 663 0 1 9 0 1 162 0 1 153 37 38 84 0 1 189 0 10 95 chain 30287 chr11 135086622 + 6371249 6371653 LTR7 482 + 0 475 41777 69 8 46 109 5 37 44 0 1 169 chain 15591 chr11 135086622 + 6385785 6386064 LTR23 429 + 0 260 61544 94 46 19 5 1 0 10 15 24 108 chain 8194 chr11 135086622 + 6388174 6388442 MER4C 627 + 275 613 74423 20 96 169 47 0 6 7 45 36 53 chain 3900 chr11 135086622 + 6408144 6408191 L1MC5 759 + 545 592 92116 47 chain 52263 chr11 135086622 + 6585928 6588254 L1MA3 4352 + 3415 4279 28795 190 10 11 118 1 0 3 9 0 6 1 4 130 13 11 64 4 5 36 1439 15 60 74 51 6 0 1 109 7 0 24 2 0 20 chain 10436 chr11 135086622 + 6686695 6686821 LTR8 732 + 606 732 69544 126 chain 16915 chr11 135086622 + 6698313 6698528 Tigger3c 601 + 355 570 59893 215 chain 80310 chr11 135086622 + 6711381 6712436 LTR13 1007 + 0 1007 21572 59 68 14 185 0 5 118 4 5 242 2 1 68 0 1 309 chain 278123 chr11 135086622 + 6729873 6732947 L1PA4 6152 + 2888 5969 7486 553 0 3 1860 0 4 661 chain 122186 chr11 135086622 + 6763053 6764501 L1PA6 6164 + 4709 6162 15163 1348 30 31 62 0 4 8 chain 28762 chr11 135086622 + 6801846 6802242 LTR7 482 + 0 469 43685 69 8 46 109 8 9 31 0 31 10 0 3 161 chain 10088 chr11 135086622 + 6821254 6821439 Tigger3a 397 + 54 276 70220 22 15 64 87 1 0 25 16 0 13 0 5 6 chain 51397 chr11 135086622 + 6853542 6854249 PABL_A-int 1935 + 1218 1913 29079 304 0 2 203 1 0 109 1 0 18 3 1 15 12 9 10 1 0 4 11 5 15 chain 47259 chr11 135086622 + 6854721 6855713 PABL_A 660 + 0 660 30553 68 3 16 5 0 1 38 16 0 27 10 21 82 341 0 16 2 1 19 0 1 255 0 1 4 1 0 105 chain 7953 chr11 135086622 + 6863919 6864078 MER30 238 + 59 238 74994 48 6 0 6 7 33 27 18 17 17 0 1 30 chain 126368 chr11 135086622 + 6877770 6879211 L1PA5 6144 + 4714 6137 14497 928 19 0 75 0 1 419 chain 28383 chr11 135086622 + 6888544 6889047 L1PA15 4387 + 3860 4351 44299 30 10 8 35 1 0 75 10 1 36 7 13 46 1 0 26 10 9 45 3 2 22 4 0 8 2 1 14 1 2 34 8 16 33 2 0 13 5 0 22 chain 549257 chr11 135086622 + 6904588 6910721 L1PA4 6152 + 0 6151 795 71 1 2 2207 4 8 98 0 4 610 0 2 678 0 1 918 0 1 63 0 2 442 0 1 892 2 4 147 chain 119604 chr11 135086622 + 6982220 6983553 L1P1 4361 + 2444 3777 15593 1333 chain 122305 chr11 135086622 + 7008471 7010280 L1PA15 4387 + 2555 4356 15143 155 0 2 350 13 17 15 8 12 16 1 0 4 0 1 41 5 0 98 0 5 87 9 8 63 0 1 114 0 1 239 30 28 50 0 4 25 3 1 14 0 1 26 9 8 43 0 1 28 2 1 37 10 8 38 8 7 27 1 0 5 0 3 44 1 0 18 11 6 10 1 0 48 12 9 42 24 16 24 chain 54429 chr11 135086622 + 7137311 7138015 L1PA8A 6298 + 4974 5677 28074 514 19 24 27 2 0 31 7 3 104 chain 181482 chr11 135086622 + 7148416 7150583 L1PA7 6471 + 4217 6403 10524 289 0 2 188 6 5 124 1 0 101 0 10 79 1 0 4 0 1 216 0 1 116 0 1 260 0 3 647 0 2 130 0 2 5 chain 21639 chr11 135086622 + 7174304 7174558 L1PA7 6471 + 5873 6127 54302 254 chain 28372 chr11 135086622 + 7174564 7174891 L1PA7 6471 + 6142 6470 44309 142 0 1 185 chain 302310 chr11 135086622 + 7177887 7181190 L1PA3long 6157 + 2845 6157 6774 959 0 1 1581 0 2 479 0 1 185 0 5 99 chain 103331 chr11 135086622 + 7182311 7184250 L1M1 2793 + 493 2335 17910 6 1 0 10 1 0 13 3 0 12 3 2 4 1 0 14 2 0 8 3 0 8 1 0 9 1 0 11 3 0 7 151 69 33 43 30 11 2 0 4 2 0 21 0 15 22 1 0 26 28 25 23 32 29 96 5 4 30 36 14 131 1 0 33 0 6 29 4 0 11 1 0 9 17 15 78 0 4 28 0 3 260 4 22 45 0 1 120 9 8 249 1 4 24 1 6 69 0 2 31 46 47 51 chain 50752 chr11 135086622 + 7193478 7194140 L1PA8 5853 + 5189 5853 29296 375 1 0 44 2 0 31 0 9 30 2 1 14 5 4 45 1 0 14 7 6 91 chain 3906 chr11 135086622 + 7234165 7234208 L1P1 4361 + 1937 1980 92074 43 chain 38241 chr11 135086622 + 7248594 7249042 L1PB1 5432 + 3728 4176 35881 448 chain 22855 chr11 135086622 + 7273781 7274066 L1PA8 5853 + 5574 5853 52569 34 2 0 71 1 0 9 1 0 52 2 1 19 2 1 92 chain 141893 chr11 135086622 + 7326553 7328078 L1PA2 6032 + 4500 6025 12949 1525 chain 97687 chr11 135086622 + 7386188 7387310 L1PA4 6152 + 5031 6143 18567 963 5 0 8 5 0 141 chain 8102 chr11 135086622 + 7477244 7477345 MLT1A 405 + 281 382 74635 101 chain 8730 chr11 135086622 + 7679185 7679299 MER21B 843 + 2 114 73143 85 2 0 27 chain 3681 chr11 135086622 + 7699957 7700000 tRNA-Gln-CAG 43 + 0 43 93734 43 chain 48006 chr11 135086622 + 7710452 7710989 L1PA3long 6157 + 5620 6157 30294 284 1 0 82 4 5 166 chain 67118 chr11 135086622 + 7720234 7720979 L1PA3long 6157 + 4292 5037 24678 119 0 1 185 1 0 440 chain 551012 chr11 135086622 + 7734499 7740482 L1PA2 6032 + 0 6031 672 466 0 44 1215 0 5 1029 4 0 1573 0 3 1696 chain 41602 chr11 135086622 + 7750030 7750534 MLT2A2 560 + 0 505 33624 203 0 1 301 chain 51675 chr11 135086622 + 7750534 7751134 L1P1 4361 + 3712 4328 28970 129 0 17 21 0 1 270 1 0 155 1 0 23 chain 42208 chr11 135086622 + 7753017 7753583 L1PA8 5853 + 5304 5853 33241 208 5 3 49 2 1 43 2 0 71 1 0 14 10 1 50 1 0 16 1 0 93 chain 25728 chr11 135086622 + 7755243 7755686 Tigger3b 1229 + 180 694 48129 51 0 1 28 42 74 38 3 26 95 4 6 18 0 2 17 0 1 19 0 11 12 1 2 54 15 13 46 chain 440876 chr11 135086622 + 7764361 7769678 L1PA3long 6157 + 256 6147 4560 309 9 10 132 5 12 104 65 17 250 0 1 157 5 6 192 6 4 2904 0 4 136 28 639 51 1 0 963 chain 138034 chr11 135086622 + 7769721 7771310 L1PA5 6144 + 4501 6087 13265 127 1 0 131 11 12 160 0 1 354 0 1 4 5 0 796 chain 140415 chr11 135086622 + 7781694 7783670 L1PA13 3608 + 113 2063 13068 23 5 2 38 7 4 30 18 10 71 2 0 123 1 0 14 1 0 17 2 0 16 13 9 10 2 1 17 2 0 19 2 0 18 7 6 89 2 0 145 1 0 258 8 7 58 0 1 56 5 9 13 4 0 149 0 2 184 1 5 472 0 1 73 chain 243971 chr11 135086622 + 7788426 7791203 L1PA5 6144 + 3366 6144 8376 325 2 0 2124 0 3 233 0 1 30 0 1 49 3 1 11 chain 159339 chr11 135086622 + 7813845 7815739 L1PA6 6164 + 4250 6161 11790 399 1 0 232 5 4 217 0 8 205 0 2 489 0 1 196 12 20 138 chain 26539 chr11 135086622 + 7843032 7843341 L1PA6 6164 + 4996 5312 46912 263 0 7 46 chain 33008 chr11 135086622 + 7843341 7843720 L1PA6 6164 + 5316 5698 39508 218 1 4 160 chain 39221 chr11 135086622 + 7843720 7844175 L1PA6 6164 + 5706 6162 35200 125 0 1 330 chain 13566 chr11 135086622 + 7844237 7844408 L1PA16 3655 + 3417 3585 64224 162 3 0 6 chain 26852 chr11 135086622 + 7859974 7860313 L1PA8 5853 + 5519 5853 46471 45 1 0 44 2 0 71 1 0 15 0 1 45 2 1 19 1 0 93 chain 548551 chr11 135086622 + 7861034 7867070 L1PA2 6032 + 0 6032 835 72 0 1 184 2 1 120 0 2 335 1 0 3828 1 0 269 4 0 1220 chain 56469 chr11 135086622 + 7934940 7935630 L1PA5 6144 + 5432 6143 27438 65 0 11 70 0 8 143 0 4 402 2 0 8 chain 3084 chr11 135086622 + 7953818 7953851 L1MB2 1706 + 1651 1684 98939 33 chain 45254 chr11 135086622 + 7974027 7974540 L1PA4 6152 + 5640 6151 31445 258 1 0 110 1 0 143 chain 21582 chr11 135086622 + 8001902 8002156 AluSp 311 + 38 291 54385 94 1 0 159 chain 123918 chr11 135086622 + 8119258 8120684 L1PA6 6164 + 4717 6162 14862 575 0 4 51 1 0 66 0 3 501 0 13 232 chain 47493 chr11 135086622 + 8138547 8139126 LTR10C 591 + 0 591 30481 34 2 0 22 0 4 86 1 9 355 0 2 79 chain 403493 chr11 135086622 + 8140813 8145189 L1PA2 6032 + 1646 6028 5110 436 0 2 164 0 1 41 0 1 371 0 2 3364 chain 3380 chr11 135086622 + 8249495 8249532 L1PA16 3655 + 3541 3578 96301 37 chain 12547 chr11 135086622 + 8304521 8304653 AluYb8 318 + 178 310 65905 132 chain 85112 chr11 135086622 + 8378727 8380999 L1PB3 3668 + 2280 3555 20601 56 1 0 37 10 11 283 1 0 42 1 0 101 0 1 177 6 4 13 3 0 18 7 8 51 0 2 69 980 17 19 6 18 83 2 1 26 8 17 57 1 0 87 50 4 13 1 0 8 1 0 25 3 1 26 chain 541239 chr11 135086622 + 8396496 8402623 L1PA4 6152 + 6 6152 1260 119 2 16 1016 0 1 1162 6 1 844 1 0 1232 0 2 617 1 0 284 0 5 512 0 1 318 0 3 13 chain 5533 chr11 135086622 + 8416113 8416179 Tigger6a 1079 + 364 430 83104 66 chain 72699 chr11 135086622 + 8447196 8448002 L1PA4 6152 + 3548 4354 23380 806 chain 104033 chr11 135086622 + 8448002 8449158 L1PA4 6152 + 4358 5516 17818 139 0 1 802 0 1 215 chain 64456 chr11 135086622 + 8449796 8450566 L1PA7 6471 + 5704 6470 25320 94 1 0 152 0 1 10 4 0 509 chain 516080 chr11 135086622 + 8489948 8496103 L1PA6 6164 + 0 6160 2465 187 0 1 272 6 5 237 0 1 19 7 6 43 0 3 14 1 18 10 17 0 203 1 0 707 1 0 168 0 1 430 1 0 864 0 1 113 1 2 1065 0 4 215 1 0 166 0 1 552 1 0 82 10 8 7 0 1 754 chain 147311 chr11 135086622 + 8498272 8500000 L1PA7 6471 + 4642 6390 12526 146 0 1 81 2 3 82 2 6 100 0 1 135 0 1 401 0 4 11 0 4 82 1 4 386 0 1 299 chain 77148 chr11 135086622 + 8502219 8503338 L1PA15 4387 + 3252 4366 22272 73 1 3 76 0 4 149 0 1 145 6 1 11 1 0 8 0 4 86 0 2 14 4 0 36 0 4 22 3 1 41 1 0 170 5 4 13 0 11 54 1 0 19 4 0 13 15 11 38 7 4 44 3 1 14 5 0 37 chain 497945 chr11 135086622 + 8516379 8522468 L1PA6 6164 + 0 5999 3204 143 6 18 32 0 1 89 7 6 220 2 1 23 1 2 404 0 25 604 1 0 474 1 0 171 0 2 236 0 1 2140 136 2 161 1 4 500 0 2 54 2 0 216 7 8 167 0 1 124 0 1 167 chain 130432 chr11 135086622 + 8522751 8524329 SVA_B 1603 + 0 1600 13988 26 12 0 15 7 0 155 1 0 437 3 0 38 0 43 21 14 11 136 14 15 8 0 1 41 0 1 226 0 2 424 chain 33323 chr11 135086622 + 8547801 8548172 L1PA5 6144 + 5773 6144 39240 371 chain 39026 chr11 135086622 + 8579774 8580332 L1MA2 4263 + 3573 4114 35336 11 8 3 75 1 0 33 0 1 98 14 11 5 0 1 145 11 9 93 7 0 47 1 0 9 chain 30870 chr11 135086622 + 8621900 8622320 MLT2A1 477 + 0 415 41251 138 0 1 30 1 5 50 7 8 92 1 0 83 10 0 8 chain 25598 chr11 135086622 + 8641656 8642062 MSTA 426 + 7 426 48316 136 36 42 21 10 7 5 0 3 22 15 22 161 chain 9227 chr11 135086622 + 8660474 8660622 MER58A 224 + 42 192 72064 22 9 18 33 7 0 77 chain 10259 chr11 135086622 + 8695109 8695256 MER2 342 + 174 322 69880 121 11 12 15 chain 3650 chr11 135086622 + 8712190 8712246 L1MB8 1703 + 1602 1649 94021 25 9 0 22 chain 54857 chr11 135086622 + 8750946 8751718 LTR12C 1709 + 819 1709 27924 18 1 0 218 19 66 87 51 20 117 0 2 93 0 1 18 1 102 57 8 7 84 chain 120445 chr11 135086622 + 8860174 8861987 L1PB3 3668 + 1834 3620 15452 121 11 3 30 0 4 105 7 9 6 5 0 305 20 26 23 0 1 8 1 0 62 0 1 61 0 1 67 1 0 160 7 6 61 0 5 91 2 0 15 3 4 76 2 1 59 3 1 145 1 0 65 2 5 29 2 1 72 33 19 18 2 0 3 1 0 25 3 1 34 10 6 12 2 1 13 7 4 15 1 0 6 chain 547368 chr11 135086622 + 8889267 8895401 L1PA5 6144 + 3 6138 901 201 0 1 910 0 1 759 0 1 1169 6 1 1271 0 1 1677 0 2 141 chain 22462 chr11 135086622 + 8896591 8896881 MER47A 366 + 43 335 53175 224 5 7 61 chain 3462 chr11 135086622 + 8971770 8971815 MER58B 340 + 292 340 95529 8 0 3 37 chain 92893 chr11 135086622 + 8977394 8978423 SVA_D 2077 + 36 1265 19197 15 0 25 132 6 1 697 0 180 179 chain 95872 chr11 135086622 + 8978425 8979521 SVA_E 1901 + 685 1883 18785 19 0 80 28 1 0 5 1 0 110 4 0 125 0 1 4 19 45 119 0 1 661 chain 6227 chr11 135086622 + 9011015 9011082 L1PA7 6471 + 4759 4826 80250 67 chain 53513 chr11 135086622 + 9097310 9098048 LTR17 781 + 0 757 28393 56 1 0 99 1 0 24 1 0 63 13 13 72 1 0 193 21 20 23 4 5 138 1 23 11 0 1 16 chain 15750 chr11 135086622 + 9109265 9109589 THE1D 372 + 0 338 61355 15 12 15 26 26 22 88 65 80 92 chain 4656 chr11 135086622 + 9119205 9119264 MER5A 189 + 7 67 87497 20 0 1 39 chain 79107 chr11 135086622 + 9127233 9128401 L1PB1 5432 + 4168 5413 21836 47 0 4 256 0 4 44 0 4 99 3 0 88 3 2 87 3 12 108 12 44 136 13 11 21 1 0 12 1 0 9 6 2 11 6 4 47 2 1 16 9 8 35 1 0 15 3 0 9 5 52 14 1 0 21 1 0 13 1 0 9 chain 28749 chr11 135086622 + 9168137 9168507 THE1B 368 + 0 368 43709 176 1 0 43 1 0 18 1 0 62 0 2 35 1 0 32 chain 11599 chr11 135086622 + 9185533 9185668 L1PA7 6471 + 6317 6451 67570 35 1 0 99 chain 23745 chr11 135086622 + 9188043 9188388 THE1B 368 + 1 368 51205 45 0 15 111 1 0 50 7 8 57 2 1 18 5 13 49 chain 26660 chr11 135086622 + 9189946 9190310 THE1B-int 1605 + 1227 1599 46745 110 5 6 5 1 0 100 10 12 59 0 5 23 0 1 51 chain 27077 chr11 135086622 + 9190315 9190669 THE1B 368 + 0 368 46159 39 1 16 112 6 5 196 chain 43069 chr11 135086622 + 9234504 9235008 MER9a3 513 + 0 505 32736 110 1 2 393 chain 9962 chr11 135086622 + 9256571 9256709 L1MB8 1703 + 1443 1584 70501 76 2 0 5 1 6 54 chain 14902 chr11 135086622 + 9325461 9325687 L1PREC2 3366 + 2491 2697 62384 21 4 0 91 6 0 46 0 1 11 11 0 36 chain 45825 chr11 135086622 + 9357501 9358401 LTR10C 591 + 10 591 31148 50 0 4 78 332 0 94 0 8 86 1 0 180 0 2 79 chain 25324 chr11 135086622 + 9364993 9366023 MER4A1 472 + 1 472 48752 13 0 2 115 2 1 21 627 15 47 1 0 6 1 44 27 0 2 6 3 1 69 25 35 67 chain 3929 chr11 135086622 + 9375878 9375940 Tigger3a 397 + 143 216 91924 17 4 14 5 0 1 36 chain 4593 chr11 135086622 + 9455864 9455988 L1MB7 1623 + 1314 1429 87827 9 1 0 14 3 0 10 36 32 43 1 0 7 chain 3149 chr11 135086622 + 9547355 9547391 MER45A 178 + 131 167 98371 36 chain 95467 chr11 135086622 + 9556243 9557540 HSMAR1 1287 + 8 1287 18847 10 0 1 233 12 13 102 10 11 142 28 0 37 2 0 6 7 9 171 0 1 408 1 7 128 chain 7650 chr11 135086622 + 9578030 9578122 U13_ 108 + 4 96 75747 92 chain 20342 chr11 135086622 + 9680923 9681166 7SK 245 + 0 243 55958 243 chain 68462 chr11 135086622 + 9694581 9695730 L1PA8A 6298 + 5442 6290 24344 47 0 7 74 1 5 298 312 0 122 7 6 6 0 1 282 chain 28924 chr11 135086622 + 9767715 9768086 THE1C 375 + 0 375 43447 135 2 6 208 1 0 13 2 3 10 chain 3446 chr11 135086622 + 9791537 9791639 MER5B 177 + 0 103 95681 18 22 24 11 18 17 33 chain 21839 chr11 135086622 + 9810681 9811037 L1PA15 4387 + 3983 4326 54054 121 1 0 27 1 0 53 2 1 22 19 14 35 17 14 44 3 1 11 chain 10568 chr11 135086622 + 9844748 9844906 L1PA8 5853 + 5697 5853 69291 43 2 1 19 12 11 82 chain 124722 chr11 135086622 + 9869539 9871444 L1PA11 4918 + 2857 4466 14743 310 1 0 165 1 0 571 1 2 22 5 6 15 2 12 55 303 0 45 1 0 100 1 2 231 2 1 13 2 0 59 chain 38972 chr11 135086622 + 9900223 9900721 LTR10F 562 + 0 562 35376 113 0 1 54 5 26 6 0 31 18 9 16 233 0 4 60 chain 6256 chr11 135086622 + 9912600 9912693 MER30 238 + 133 232 80151 12 9 15 72 chain 6198 chr11 135086622 + 9930181 9930257 HSMAR1 1287 + 1211 1287 80361 76 chain 517610 chr11 135086622 + 9930629 9936891 L1PA6 6164 + 0 6095 2387 366 4 0 203 1 0 675 0 1 755 0 1 333 37 10 840 0 1 6 1 0 115 147 0 201 0 4 11 2 0 378 1 2 443 1 3 295 1 0 37 1 0 457 0 1 180 0 4 559 0 1 126 0 1 86 chain 25329 chr11 135086622 + 9952816 9953155 L1PB1 5432 + 4742 5103 48744 65 6 14 132 0 11 27 3 6 106 chain 29380 chr11 135086622 + 10004454 10004950 MER4A 717 + 0 561 42770 51 0 2 17 17 18 40 20 1 8 9 0 37 0 83 12 4 0 68 0 17 140 23 17 50 chain 45329 chr11 135086622 + 10035289 10035813 L1PA6 6164 + 5029 5554 31405 365 3 4 156 chain 36849 chr11 135086622 + 10035813 10036259 L1PA6 6164 + 5557 6003 36847 446 chain 5843 chr11 135086622 + 10044863 10044942 LTR10G 522 + 413 493 81722 36 4 5 39 chain 227529 chr11 135086622 + 10058807 10062432 L1PA14 3548 + 83 3485 8828 7 2 0 58 4 0 69 1 0 20 2 1 30 2 0 31 2 0 190 8 0 76 8 9 4 1 0 15 0 9 66 1 0 66 6 136 301 0 1 4 1 0 179 4 3 116 1 2 25 1 0 9 3 7 130 8 6 146 1 0 324 331 10 259 0 11 126 6 7 127 0 1 19 20 16 239 3 1 12 5 3 47 2 0 4 2 0 36 2 1 45 3 0 27 9 5 12 0 6 4 9 0 30 0 7 43 1 0 108 19 14 34 48 43 38 5 0 7 1 0 20 chain 135055 chr11 135086622 + 10077128 10078787 L1PA7 6471 + 4785 6468 13541 191 20 20 131 5 21 206 2 1 87 0 1 178 1 0 233 0 9 605 chain 34057 chr11 135086622 + 10101099 10102039 HUERS-P1-int 2401 + 252 1039 38664 25 4 0 14 3 1 7 1 0 8 161 110 11 3 0 8 1 0 25 7 1 11 1 0 8 2 0 8 49 28 13 1 0 5 2 0 6 21 12 13 8 6 16 12 11 74 2 0 11 67 34 34 1 0 63 9 1 11 4 3 129 0 3 45 1 0 10 1 0 8 2 0 14 chain 5170 chr11 135086622 + 10133873 10133933 MER21C 908 + 100 160 84819 60 chain 46064 chr11 135086622 + 10145774 10146865 L1PREC2 3366 + 2271 3232 31034 321 1 0 11 7 9 92 0 1 13 0 1 34 2 0 53 1 0 42 160 123 35 11 9 21 178 105 14 28 20 10 12 7 19 14 9 12 chain 15823 chr11 135086622 + 10157591 10157826 MER1A 529 + 295 529 61255 148 32 31 55 chain 545775 chr11 135086622 + 10173152 10179353 L1PA3long 6157 + 4 6156 984 148 0 1 623 0 128 1978 178 0 3274 chain 163006 chr11 135086622 + 10249948 10252297 MER57-int 2662 + 40 2661 11544 30 34 29 9 1 0 72 38 290 29 2 0 83 0 4 118 0 4 139 1 0 23 0 8 110 0 36 54 0 1 114 0 1 4 2 1 57 1 0 113 0 2 28 1 0 200 0 1 4 1 17 288 3 0 418 9 6 25 5 6 69 8 3 8 1 0 60 14 2 12 2 0 18 9 7 6 1 0 9 4 1 24 1 0 9 5 0 33 3 0 31 1 0 5 chain 18030 chr11 135086622 + 10252299 10252520 MER57A1 433 + 0 221 58624 221 chain 9692 chr11 135086622 + 10254402 10254612 L1MA8 2339 + 1759 1958 71066 5 1 0 40 40 36 23 7 6 61 5 1 23 1 0 4 chain 24925 chr11 135086622 + 10285418 10285837 MER51B 395 + 0 388 49390 61 49 8 121 1 0 39 15 14 43 0 1 10 14 25 66 chain 403739 chr11 135086622 + 10339628 10344780 L1P2 5180 + 2 4927 5108 148 5 4 40 1 0 57 1 0 6 1 2 148 0 1 5 2 1 101 1 0 48 1 0 119 10 21 84 1 0 6 1 0 244 0 1 811 0 1 48 2 1 266 0 1 158 28 0 772 0 1 78 1 2 55 0 4 18 3 6 404 1 0 211 0 1 255 0 1 155 5 7 45 0 1 301 1 0 149 227 9 128 chain 112011 chr11 135086622 + 10344824 10346163 L1PA6 6164 + 4809 6160 16815 195 0 1 346 0 6 37 3 4 136 5 5 338 0 3 128 0 1 151 chain 3852 chr11 135086622 + 10371652 10371704 L1MA8 2339 + 2215 2266 92489 42 1 0 9 chain 4683 chr11 135086622 + 10373769 10373823 L1MB2 1706 + 1640 1694 87360 54 chain 58448 chr11 135086622 + 10384871 10385551 L1PA4 6152 + 5472 6151 26825 524 2 0 5 6 7 143 chain 4490 chr11 135086622 + 10454420 10454591 MER103C 291 + 45 213 88397 12 17 13 5 3 0 14 5 12 46 53 50 16 chain 481571 chr11 135086622 + 10466277 10472450 L1PA7 6471 + 539 6467 3596 38 3 0 617 0 11 47 17 36 53 7 5 520 0 1 774 8 6 164 0 1 91 0 2 47 0 26 551 3 0 8 40 40 42 1 0 4 0 1 302 36 20 57 1 5 38 312 6 622 0 4 277 1 0 323 0 4 62 0 1 28 1 6 239 0 6 366 0 3 145 0 1 328 chain 28312 chr11 135086622 + 10469757 10470057 AluYa5 310 + 0 299 44394 97 1 0 202 chain 8072 chr11 135086622 + 10553675 10553775 MER21A 919 + 25 125 74695 100 chain 12453 chr11 135086622 + 10561837 10561979 L1PA7 6471 + 6327 6469 66063 142 chain 139647 chr11 135086622 + 10614372 10615943 L1PA5 6144 + 4562 6144 13123 66 0 1 260 0 1 130 0 1 125 0 5 140 0 4 694 2 1 154 chain 43410 chr11 135086622 + 10684121 10684602 L1PA3long 6157 + 5661 6142 32496 481 chain 117126 chr11 135086622 + 10698726 10700270 THE1B-int 1605 + 0 1597 16033 20 0 1 242 8 28 139 0 25 233 4 9 9 0 3 8 3 0 60 1 0 116 40 44 403 0 1 6 2 1 237 1 0 12 chain 28514 chr11 135086622 + 10700445 10700754 AluYb8 318 + 0 307 44099 132 2 0 175 chain 7145 chr11 135086622 + 10725914 10726002 HY3 101 + 12 100 77118 88 chain 58190 chr11 135086622 + 10731182 10731904 LTR8 732 + 0 719 26907 320 1 0 328 2 0 71 chain 12838 chr11 135086622 + 10746077 10746413 L1PB1 5432 + 5123 5426 65380 15 1 0 6 1 0 14 5 1 9 6 4 48 2 1 15 1 0 43 2 1 16 1 0 4 28 15 11 3 1 5 1 0 14 2 0 23 29 27 22 1 0 8 chain 9568 chr11 135086622 + 10819314 10819510 Tigger2a 444 + 245 443 71335 9 2 0 46 18 30 28 1 0 6 4 5 28 21 13 33 chain 34078 chr11 135086622 + 10835662 10836147 MER1A 529 + 44 529 38647 11 7 8 210 0 1 128 0 4 37 33 22 40 0 5 19 chain 3990 chr11 135086622 + 10888085 10888132 LTR47A 437 + 336 383 91522 47 chain 3366 chr11 135086622 + 10896614 10896683 MIRb 242 + 111 179 96410 33 16 15 20 chain 306079 chr11 135086622 + 10963805 10967398 L1P2 5180 + 578 4156 6694 209 1 0 6 2 1 42 0 2 884 3 2 99 1 3 21 2 1 224 0 13 122 0 4 110 39 0 862 1 0 85 0 4 227 7 11 646 chain 9794 chr11 135086622 + 11010249 11010390 MER85 139 + 0 139 70839 101 11 9 29 chain 38696 chr11 135086622 + 11060678 11061135 L1PA7 6471 + 6010 6469 35563 63 0 1 278 0 1 116 chain 27265 chr11 135086622 + 11089133 11089459 THE1A 353 + 0 326 45873 110 1 0 67 0 1 148 chain 21337 chr11 135086622 + 11090609 11090942 LTR23 429 + 0 335 54717 38 4 3 41 1 0 11 20 15 38 0 8 111 8 9 61 chain 3626 chr11 135086622 + 11140179 11140243 MER58A 224 + 49 115 94212 28 9 10 10 0 1 17 chain 27427 chr11 135086622 + 11237928 11238303 THE1C 375 + 0 375 45663 38 3 8 9 1 0 65 3 0 229 1 0 26 chain 15808 chr11 135086622 + 11278314 11278520 L1PA7 6471 + 6260 6469 61277 16 3 0 8 0 3 167 0 3 12 chain 20645 chr11 135086622 + 11324883 11325142 L1PB2 3958 + 3584 3838 55565 33 1 0 64 1 0 72 2 0 22 1 0 63 chain 13859 chr11 135086622 + 11383867 11384031 THE1D 372 + 208 372 63783 164 chain 6389 chr11 135086622 + 11384163 11384256 MLT1A0 366 + 26 117 79710 11 1 0 56 4 3 21 chain 3086 chr11 135086622 + 11412942 11413180 LTR16C 481 + 210 468 98904 23 188 208 27 chain 33324 chr11 135086622 + 11492461 11492908 L1PA8 5853 + 5408 5852 39239 156 1 0 44 2 0 58 0 1 15 8 6 46 8 7 22 1 0 51 0 3 35 chain 3416 chr11 135086622 + 11510563 11510600 tRNA-Gly-GGA 38 + 0 37 95945 37 chain 49347 chr11 135086622 + 11674889 11675451 L1PA5 6144 + 5575 6138 29819 179 0 1 383 chain 23395 chr11 135086622 + 11686344 11686684 THE1A 353 + 0 341 51768 13 2 0 34 0 1 35 0 1 10 1 0 14 25 26 89 0 1 117 chain 121452 chr11 135086622 + 11686697 11688255 THE1A-int 1579 + 1 1574 15269 11 3 5 201 0 1 54 10 17 350 5 8 4 1 0 4 0 1 52 0 3 35 0 1 6 2 0 33 5 4 380 7 8 395 chain 425559 chr11 135086622 + 11691550 11697044 L1P2 5180 + 2 5175 4806 148 1 0 43 2 1 53 1 0 267 0 1 167 3 4 101 1 0 6 1 0 165 8 9 281 1 0 192 0 1 352 1 3 202 8 11 129 1 6 27 6 3 94 0 2 49 10 0 764 316 0 71 5 9 145 0 1 679 30 4 14 1 19 332 0 4 617 1 0 112 1 0 46 1 0 39 chain 3762 chr11 135086622 + 11731080 11731123 MLT2B1 522 + 479 522 93129 43 chain 28822 chr11 135086622 + 11745346 11745688 L1PA7 6471 + 6118 6470 43593 114 0 14 218 4 0 6 chain 3735 chr11 135086622 + 11749308 11749349 MADE1 96 + 45 86 93360 41 chain 34468 chr11 135086622 + 11809960 11810337 L1PA2 6032 + 5655 6032 38381 377 chain 42613 chr11 135086622 + 11857584 11858246 MER51A 677 + 0 676 32996 24 10 11 141 20 3 22 10 0 33 8 15 143 3 36 104 16 18 50 1 0 11 10 9 56 chain 47719 chr11 135086622 + 12012171 12012937 L1PA17 2846 + 1930 2693 30388 97 1 2 86 1 20 33 10 9 45 0 1 204 11 0 27 0 2 43 9 11 7 8 0 18 1 0 53 20 17 8 2 0 18 1 0 14 6 5 43 chain 19059 chr11 135086622 + 12021882 12022169 L1MB5 1630 + 741 1030 57485 49 6 9 157 0 1 7 21 19 47 chain 112955 chr11 135086622 + 12037509 12039169 L1PA15 4387 + 2709 4347 16679 438 2 1 20 2 0 148 1 4 7 4 0 151 13 17 55 0 2 185 6 5 70 2 0 15 4 0 28 0 1 34 6 4 39 1 0 81 0 2 88 1 0 27 12 11 43 1 0 22 4 0 10 1 0 34 21 19 44 3 1 12 10 5 15 chain 74186 chr11 135086622 + 12146009 12146845 L1PA5 6144 + 4927 5768 23037 365 1 5 417 0 1 53 chain 512782 chr11 135086622 + 12365970 12372092 L1PA6 6164 + 4 6162 2629 445 8 0 84 1 2 34 1 0 225 0 17 102 0 4 93 0 9 939 1 0 233 0 2 136 19 0 709 0 1 150 0 1 50 0 4 413 9 28 365 4 5 471 2 0 792 1 5 468 0 3 165 0 1 202 chain 45733 chr11 135086622 + 12374211 12374728 MER9a2 513 + 0 513 31194 344 4 0 169 chain 8215 chr11 135086622 + 12464714 12464813 MSTC 436 + 6 105 74364 99 chain 7405 chr11 135086622 + 12476398 12476510 FAM 185 + 63 170 76379 90 10 5 12 chain 13992 chr11 135086622 + 12594950 12595113 L1PA6 6164 + 5155 5317 63606 4 1 0 158 chain 70533 chr11 135086622 + 12595113 12595949 L1PA6 6164 + 5323 6162 23860 680 14 15 21 0 2 121 chain 23677 chr11 135086622 + 12596807 12597173 THE1D 372 + 0 370 51312 132 1 0 25 0 1 28 57 60 17 0 1 106 chain 156031 chr11 135086622 + 12606980 12609167 L1PA7 6471 + 4542 6467 12001 134 0 4 43 0 1 4 0 6 221 1 0 249 1 0 122 312 0 41 0 1 47 0 6 21 0 1 178 0 3 85 0 1 514 8 37 206 chain 21148 chr11 135086622 + 12661098 12661505 L1PB1 5432 + 5047 5428 54947 5 1 0 51 1 2 9 3 0 24 1 0 8 1 0 10 2 0 3 2 0 8 2 0 53 19 17 43 1 0 14 1 0 6 11 10 17 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 1 0 4 chain 4199 chr11 135086622 + 12733849 12733898 Tigger3 1187 + 479 528 90136 49 chain 4785 chr11 135086622 + 12904444 12904506 Charlie1a 1436 + 871 933 86772 62 chain 26540 chr11 135086622 + 12909325 12909635 L1PA8A 6298 + 5981 6291 46909 310 chain 29027 chr11 135086622 + 12969796 12970331 L1PA15 4387 + 3868 4365 43278 16 21 19 29 1 0 140 16 0 32 1 0 26 2 1 54 14 13 8 4 0 10 2 1 50 6 3 41 8 6 10 7 2 27 1 0 9 chain 21506 chr11 135086622 + 12973092 12973352 AluSq10 312 + 38 298 54504 260 chain 15461 chr11 135086622 + 12986539 12986808 Tigger3a 397 + 54 374 61710 21 24 83 37 13 8 130 11 8 33 chain 82274 chr11 135086622 + 13058575 13059503 L1PA5 6144 + 5213 6144 21187 82 1 5 831 1 0 13 chain 304024 chr11 135086622 + 13085850 13089538 L1PA7 6471 + 2774 6466 6742 121 0 3 646 0 1 312 0 1 156 24 7 268 0 1 666 0 5 67 1 2 409 0 1 184 2 0 17 6 17 627 1 0 29 1 0 6 1 2 144 chain 28571 chr11 135086622 + 13101299 13101609 AluYa5 310 + 1 310 43997 131 1 0 178 chain 28917 chr11 135086622 + 13113834 13114136 AluYa5 310 + 2 304 43462 302 chain 76838 chr11 135086622 + 13129431 13130335 L1PA7 6471 + 4038 4947 22363 630 0 4 14 5 7 234 1 0 20 chain 130077 chr11 135086622 + 13130339 13131856 L1PA7 6471 + 4949 6467 14032 106 0 1 293 0 1 274 1 0 843 chain 28601 chr11 135086622 + 13163763 13164068 AluYa5 310 + 0 303 43949 132 2 0 171 chain 4956 chr11 135086622 + 13172769 13172842 MER58A 224 + 42 115 85859 39 6 6 28 chain 31912 chr11 135086622 + 13185458 13185888 MLT2A1 477 + 0 475 40401 168 5 2 11 0 1 22 0 1 176 13 59 35 chain 40676 chr11 135086622 + 13218717 13219238 L1PA8 5853 + 5330 5845 34163 234 1 0 44 2 0 52 0 1 17 12 10 52 2 1 19 1 0 85 chain 2711 chr11 135086622 + 13223815 13223851 Charlie4z 170 + 51 86 102297 16 1 0 19 chain 2916 chr11 135086622 + 13431667 13431699 U2 167 + 0 32 100699 32 chain 2718 chr11 135086622 + 13432880 13432946 HAL1 992 + 153 216 102195 17 17 15 27 1 0 4 chain 6272 chr11 135086622 + 13433057 13433211 MER21A 919 + 3 169 80089 41 8 21 17 1 0 6 0 13 27 6 19 10 26 0 12 chain 75686 chr11 135086622 + 13470703 13471633 L1PA8 5853 + 4924 5853 22661 85 2 0 514 0 8 33 1 0 44 2 0 71 1 0 8 0 6 7 8 1 39 2 1 19 1 0 93 chain 375313 chr11 135086622 + 13479960 13484608 L1PA5 6144 + 5 5367 5566 130 29 43 656 17 0 118 19 0 217 9 0 25 20 19 131 0 1 965 8 0 118 3 7 240 0 1 413 0 4 77 1 0 150 0 1 407 0 1 170 0 745 162 1 0 487 8 7 67 chain 41371 chr11 135086622 + 13485184 13485843 LTR12 884 + 0 880 33745 14 21 22 41 2 134 167 2 0 73 13 0 170 40 7 10 10 13 29 0 133 67 chain 12744 chr11 135086622 + 13487493 13487718 MER30 238 + 0 231 65536 14 1 19 9 18 0 51 6 14 89 0 3 23 5 0 9 chain 279326 chr11 135086622 + 13507202 13510245 L1PA2 6032 + 2986 6028 7439 2282 1 0 760 chain 34484 chr11 135086622 + 13514231 13514610 L1PA2 6032 + 5645 6024 38367 379 chain 4144 chr11 135086622 + 13514745 13514809 L1M3 994 + 540 602 90492 33 5 3 26 chain 93293 chr11 135086622 + 13519604 13520779 L1PA8A 6298 + 5127 6291 19143 255 0 1 101 1 0 96 2 1 257 13 0 253 5 6 79 5 7 108 chain 3830 chr11 135086622 + 13521234 13521278 MLT2D 439 + 395 439 92647 44 chain 26593 chr11 135086622 + 13536580 13536957 THE1C 375 + 0 375 46846 121 17 14 46 0 1 59 1 0 4 3 4 126 chain 510528 chr11 135086622 + 13569850 13575914 L1PA6 6164 + 2 6160 2744 414 0 1 364 6 23 47 0 2 73 0 1 820 0 2 36 1 0 172 0 1 366 4 1 420 0 1 28 0 2 81 1 0 36 0 64 232 0 1 340 0 1 77 0 1 747 0 1 109 0 3 204 1 0 335 0 1 39 1 0 245 0 4 857 2 0 6 chain 293422 chr11 135086622 + 13583091 13587335 L1PA10 4194 + 250 4161 7030 21 2 1 15 1 0 7 37 12 8 1 0 21 2 0 18 16 18 11 7 5 8 7 0 7 2 1 85 2 0 28 1 4 286 340 15 689 1 2 180 1 3 416 0 1 4 1 0 110 0 4 47 0 2 86 9 10 306 1 5 274 1 0 174 5 3 178 1 10 71 0 1 316 1 13 44 0 1 324 2 1 20 3 0 34 1 0 11 chain 28924 chr11 135086622 + 13583687 13584000 AluYb8 318 + 0 312 43448 132 1 0 180 chain 160537 chr11 135086622 + 13590898 13593588 L1MA3 4352 + 1982 4352 11716 42 308 0 34 19 25 230 1 0 8 5 6 7 0 2 176 5 0 117 7 9 85 1 0 208 0 7 174 0 1 13 11 9 126 10 19 97 2 3 63 1 4 111 5 2 306 4 0 63 1 4 159 54 32 39 17 16 81 7 5 16 9 7 29 1 0 11 1 0 3 2 0 21 chain 494750 chr11 135086622 + 13651253 13657358 L1PA6 6164 + 0 6119 3294 275 1 0 173 20 1 120 1 0 218 0 17 99 0 4 685 0 3 481 0 1 281 0 4 151 0 1 66 23 12 118 0 3 469 2 3 4 0 1 50 0 4 409 0 4 882 0 1 239 0 1 364 4 3 170 1 5 138 10 8 265 9 10 246 22 21 109 chain 340369 chr11 135086622 + 13750715 13755501 L1PB1 5432 + 1023 5420 6060 226 0 4 34 0 3 37 0 1 5 4 3 66 9 0 10 0 2 196 3 4 94 0 2 325 1 2 323 319 0 377 20 8 474 0 1 212 0 3 184 55 12 78 0 1 18 1 4 320 0 1 93 1 0 65 1 0 6 0 1 391 8 13 83 7 9 90 5 0 139 0 1 117 0 8 33 1 0 12 5 0 20 1 0 12 1 0 10 5 1 10 2 0 53 2 1 15 1 0 41 7 6 13 3 0 6 16 6 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 21999 chr11 135086622 + 13777430 13777761 LTR7 482 + 86 444 53836 15 20 14 138 8 39 15 0 1 109 13 14 13 chain 6233 chr11 135086622 + 13780739 13780816 L1MB3 1562 + 1231 1308 80227 77 chain 63657 chr11 135086622 + 13799969 13800722 L1PA5 6144 + 5404 6143 25487 684 0 4 9 18 0 42 chain 11122 chr11 135086622 + 13805411 13805544 LTR29 598 + 388 521 68370 133 chain 36879 chr11 135086622 + 13827861 13828256 L1HS 6032 + 5375 5770 36829 395 chain 29190 chr11 135086622 + 13846286 13846591 AluYg6 310 + 0 305 43066 305 chain 14386 chr11 135086622 + 13862118 13862274 L1PA3long 6157 + 5984 6140 63058 156 chain 16428 chr11 135086622 + 13947975 13948172 MER107 203 + 0 203 60479 173 0 6 24 chain 3795 chr11 135086622 + 13982093 13982166 MER44A 345 + 147 229 92887 15 3 9 16 6 9 33 chain 3466 chr11 135086622 + 14050354 14050391 MER58A 224 + 43 80 95494 37 chain 3526 chr11 135086622 + 14051200 14051242 MLT1A0 366 + 106 148 95062 42 chain 5625 chr11 135086622 + 14057259 14057324 L1MC4 1079 + 684 749 82683 65 chain 24282 chr11 135086622 + 14206618 14207012 L1PA13 3608 + 3109 3485 50364 23 5 1 27 1 0 101 1 0 4 18 16 54 7 6 21 1 0 24 1 0 10 2 0 47 2 0 5 2 0 20 1 0 17 chain 45304 chr11 135086622 + 14211115 14211620 L1PA7 6471 + 4444 4949 31417 505 chain 28471 chr11 135086622 + 14326778 14327085 AluYa5 310 + 0 306 44169 132 1 0 174 chain 3678 chr11 135086622 + 14339022 14339083 LTR54 533 + 131 191 93758 13 1 2 13 2 0 32 chain 5009 chr11 135086622 + 14351135 14351193 L1MC4 1079 + 705 763 85614 58 chain 11952 chr11 135086622 + 14370341 14370564 Tigger4a 237 + 13 237 66919 94 65 66 64 chain 3777 chr11 135086622 + 14395233 14395281 MER50 708 + 495 542 93011 8 1 0 39 chain 16039 chr11 135086622 + 14400897 14401117 L1PA8 5853 + 5637 5853 60975 41 2 1 13 1 0 46 5 4 18 1 0 93 chain 14374 chr11 135086622 + 14404313 14404548 Tigger3b 1229 + 20 259 63079 45 8 11 18 16 17 61 0 1 20 5 4 62 chain 20620 chr11 135086622 + 14406237 14406508 Tigger3c 601 + 149 437 55608 137 0 3 74 1 11 6 0 4 53 chain 78947 chr11 135086622 + 14406736 14407794 MER11C 1089 + 0 1073 21886 247 0 9 57 0 4 69 1 0 143 55 54 107 10 13 34 0 1 182 1 0 144 0 1 8 chain 33606 chr11 135086622 + 14408327 14408758 MLT2A1 477 + 2 477 38995 140 0 1 26 1 5 150 1 0 58 1 37 48 0 4 6 chain 454891 chr11 135086622 + 14429804 14435023 L1PA5 6144 + 868 6086 4265 268 0 2 31 9 0 374 0 1 763 2 0 214 0 1 425 0 1 935 0 2 157 1 0 299 0 4 791 0 1 602 0 1 240 9 8 15 1 0 83 chain 32497 chr11 135086622 + 14451032 14451787 MLT2A1 477 + 0 477 39945 33 0 5 130 5 2 38 318 0 69 1 0 108 3 41 19 0 1 31 chain 25171 chr11 135086622 + 14477116 14477405 AluY 311 + 15 298 49003 192 6 0 91 chain 107621 chr11 135086622 + 14496334 14497891 L1MA2 4263 + 2555 4098 17375 89 15 8 49 14 9 29 1 2 111 0 2 45 1 3 164 21 23 43 0 1 67 0 8 252 7 6 72 0 1 27 1 0 8 18 11 36 0 4 37 1 0 134 13 10 146 15 13 93 7 0 17 1 0 23 chain 3808 chr11 135086622 + 14512523 14512829 MER68B 564 + 215 557 92787 20 117 139 32 66 77 18 9 0 7 25 37 12 chain 28747 chr11 135086622 + 14524260 14524683 LTR7B 505 + 0 495 43710 108 0 10 24 8 10 23 0 38 12 3 27 26 0 2 85 1 0 11 3 0 12 0 1 52 14 13 41 chain 149813 chr11 135086622 + 14524833 14526872 HERVH-int 3825 + 1921 3825 12363 75 0 2 25 0 3 60 4 25 184 0 1 549 13 13 115 165 0 42 1 0 62 0 3 27 1 2 716 chain 28159 chr11 135086622 + 14528629 14529052 LTR7B 505 + 1 495 44616 107 0 10 24 8 10 23 0 38 12 3 27 26 0 2 85 5 4 10 4 0 7 0 1 54 14 13 41 chain 17264 chr11 135086622 + 14540892 14541087 L1PA5 6144 + 5937 6132 59500 195 chain 346319 chr11 135086622 + 14569250 14573817 L1P2 5180 + 4 4299 5962 100 0 1 34 12 11 97 6 5 53 0 1 202 2 1 6 1 0 272 1 0 6 1 0 140 7 32 283 0 1 83 1 4 49 0 5 18 11 15 357 2 0 56 312 0 97 0 5 389 1 0 6 0 1 1285 0 2 48 0 1 629 chain 27697 chr11 135086622 + 14574863 14575235 THE1C-int 1605 + 0 429 45323 140 0 54 65 1 0 49 4 8 113 chain 19804 chr11 135086622 + 14578001 14578233 L1PA7 6471 + 6237 6469 56669 232 chain 113700 chr11 135086622 + 14590886 14592270 LTR12C 1709 + 0 1709 16588 170 0 7 88 1 2 81 2 0 231 1 0 195 0 322 15 1 0 6 3 1 106 0 4 357 3 0 124 chain 549673 chr11 135086622 + 14661329 14667444 L1PA3long 6157 + 11 6157 771 352 0 1 218 0 1 1606 20 59 327 0 4 1824 18 4 1750 chain 32247 chr11 135086622 + 14667465 14667833 L1PA4 6152 + 5768 6136 40150 368 chain 12755 chr11 135086622 + 14679320 14679486 MER51B 395 + 230 395 65512 15 7 6 144 chain 559517 chr11 135086622 + 14715908 14721938 L1PA2 6032 + 2 6032 188 5307 0 1 560 1 0 162 chain 31841 chr11 135086622 + 14721939 14722316 L1PA4 6152 + 5768 6152 40460 97 1 4 144 1 0 128 0 5 6 chain 9384 chr11 135086622 + 14724410 14724650 Tigger4a 237 + 0 237 71736 65 24 11 22 1 0 21 55 65 31 7 8 14 chain 10724 chr11 135086622 + 14776523 14776641 L1PA2 6032 + 5908 6026 69003 118 chain 515525 chr11 135086622 + 14777675 14783749 L1PA5 6144 + 0 6121 2491 125 0 1 152 12 0 699 0 1 191 9 0 266 0 5 754 0 2 117 3 1 65 0 4 875 0 2 167 0 1 253 1 4 400 1 0 262 0 4 143 6 55 690 1 0 55 1 0 83 0 4 613 0 1 15 4 0 111 chain 30879 chr11 135086622 + 14806888 14807269 L1PA7 6471 + 6088 6468 41240 101 0 3 269 4 0 7 chain 36061 chr11 135086622 + 14816820 14817229 L1PA5 6144 + 5517 5926 37378 409 chain 18558 chr11 135086622 + 14817229 14817446 L1PA5 6144 + 5927 6144 58040 217 chain 561366 chr11 135086622 + 14844351 14850498 L1PA3long 6157 + 4 6157 147 1718 1 0 33 0 1 1506 0 3 1283 0 3 1606 chain 131343 chr11 135086622 + 14863514 14865202 L1P2 5180 + 1702 3362 13886 394 1 0 165 0 2 56 1 0 56 7 6 4 0 1 197 0 3 195 1 4 133 74 35 69 1 0 161 1 0 49 0 4 21 0 3 102 chain 184928 chr11 135086622 + 14882654 14884687 L1PA3long 6157 + 4116 6153 10341 1194 0 4 531 1 0 169 0 1 138 chain 4687 chr11 135086622 + 14960715 14960908 MSTC 436 + 190 394 87341 39 14 13 5 2 0 15 96 110 22 chain 17586 chr11 135086622 + 14961775 14961964 L1PA3long 6157 + 2987 3176 59138 189 chain 105866 chr11 135086622 + 14961964 14963135 L1PA3long 6157 + 3177 4350 17583 341 0 2 830 chain 164144 chr11 135086622 + 14963135 14964935 L1PA3long 6157 + 4354 6152 11474 1042 1 0 428 1 0 328 chain 399184 chr11 135086622 + 14993518 14998316 L1PA7 6471 + 1673 6467 5168 816 1 0 45 5 0 98 9 0 257 0 4 1516 0 1 154 15 15 82 0 1 616 2 3 318 1 0 15 0 4 518 0 1 330 chain 7743 chr11 135086622 + 15008480 15008576 MER85 139 + 0 96 75507 96 chain 178337 chr11 135086622 + 15018622 15021002 L1PA10 4194 + 1782 4150 10662 146 0 1 86 6 10 102 0 1 7 15 10 471 1 0 6 0 1 33 3 0 7 10 3 324 17 0 145 4 5 64 0 3 252 1 0 394 4 0 59 8 9 13 0 1 12 11 27 142 3 0 34 chain 9970 chr11 135086622 + 15031537 15031676 MLT1B 390 + 247 387 70484 107 3 5 4 1 0 24 chain 7816 chr11 135086622 + 15036236 15036332 Tigger2b_Pri 1066 + 809 905 75328 96 chain 17890 chr11 135086622 + 15095486 15095679 L1PA4 6152 + 5958 6151 58769 193 chain 4417 chr11 135086622 + 15246838 15246999 MER63A 208 + 0 135 88801 25 95 69 41 chain 109374 chr11 135086622 + 15314198 15315462 L1PA6 6164 + 4879 6156 17129 191 1 0 217 0 13 98 0 1 757 chain 22033 chr11 135086622 + 15350188 15350424 L1PA2 6032 + 5601 5837 53793 236 chain 30458 chr11 135086622 + 15377553 15377949 HERVL-int 5654 + 0 407 41621 30 0 1 313 0 1 22 14 23 17 chain 40656 chr11 135086622 + 15457937 15458412 L1PA7 6471 + 5993 6468 34183 475 chain 15411 chr11 135086622 + 15557706 15558112 L1MC1 2226 + 1778 2149 61772 64 11 12 10 26 19 4 0 1 20 7 6 58 17 14 9 2 0 52 38 30 6 3 0 21 2 0 19 1 0 6 17 7 13 chain 6031 chr11 135086622 + 15561397 15561627 LTR12C 1709 + 936 1086 80960 19 143 63 68 chain 5051 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9 9 0 26 1 0 4 1 0 14 5 1 9 2 0 48 31 31 10 1 0 27 1 0 16 18 8 18 3 1 5 1 0 14 2 0 24 1 0 12 chain 8051 chr11 135086622 + 16136279 16136407 Tigger1 2417 + 2197 2301 74747 55 24 0 49 chain 542696 chr11 135086622 + 16141388 16147512 L1PA5 6144 + 3 6144 1162 276 1 12 437 0 1 574 0 1 1369 0 1 392 7 9 2756 0 1 162 0 1 36 1 0 113 chain 41677 chr11 135086622 + 16375690 16376177 L1PA7 6471 + 5966 6459 33571 76 0 2 155 0 4 256 chain 50237 chr11 135086622 + 16390684 16391295 L1PA7 6471 + 5802 6417 29470 500 13 17 98 chain 40666 chr11 135086622 + 16425409 16425974 L1PA13 3608 + 2814 3371 34174 151 2 0 167 10 13 15 1 0 114 2 0 62 11 10 10 5 0 15 chain 28858 chr11 135086622 + 16466648 16466954 AluYa5 310 + 0 305 43539 132 1 0 173 chain 320793 chr11 135086622 + 16496339 16500000 L1P1 4361 + 1 3672 6393 728 0 1 1171 0 9 784 1 2 462 1 0 514 chain 161614 chr11 135086622 + 16500000 16501841 L1PA4 6152 + 3678 5520 11636 558 0 1 28 0 1 1054 2 1 199 chain 90793 chr11 135086622 + 16516458 16517441 L1PA3long 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L1PREC2 3366 + 136 534 54676 34 1 0 10 2 0 20 7 2 7 1 0 24 13 11 13 3 1 33 370 2 13 6 1 36 15 8 49 1 0 29 0 5 6 6 1 29 2 1 63 chain 507843 chr11 135086622 + 16678495 16684737 L1PA6 6164 + 14 6159 2855 436 13 3 110 11 13 211 0 17 156 1 2 21 0 1 87 0 1 100 1 0 71 5 8 4 0 1 18 1 5 396 0 1 115 5 6 535 1 2 140 0 1 23 2 1 692 1 0 567 125 0 607 0 4 1029 1 0 155 0 6 216 0 1 213 17 16 149 2 0 5 chain 55457 chr11 135086622 + 16720110 16720703 L1PA3long 6157 + 5564 6157 27732 593 chain 22034 chr11 135086622 + 16721843 16722171 L1PA14 3548 + 3069 3391 53792 21 0 2 18 2 0 4 2 0 17 2 0 6 1 0 84 1 0 19 0 7 85 1 0 8 5 1 31 9 7 12 chain 473559 chr11 135086622 + 16727981 16733737 L1PA7 6471 + 693 6470 3779 208 15 25 707 0 2 243 0 2 572 0 3 80 1 8 218 25 0 355 0 1 386 2 0 415 0 3 88 1 0 119 0 1 261 1 4 277 0 4 267 0 1 18 2 4 578 1 0 56 1 0 22 0 3 76 0 2 54 0 7 436 15 14 94 1 2 161 chain 60430 chr11 135086622 + 16751515 16752329 Charlie3 2679 + 1830 2670 26257 26 0 18 20 3 4 83 2 1 93 0 1 306 2 3 84 1 0 86 0 6 34 15 14 6 0 2 53 chain 30825 chr11 135086622 + 16823807 16824251 L1MA3 4352 + 3781 4205 41289 274 0 2 36 32 13 7 3 0 92 chain 16776 chr11 135086622 + 16839535 16839820 MER2 342 + 35 329 60059 32 25 20 107 8 0 20 0 10 23 0 3 20 4 13 46 chain 19255 chr11 135086622 + 16842252 16842490 7SK 245 + 0 239 57288 131 6 7 101 chain 126195 chr11 135086622 + 16887360 16888864 SVA_C 1631 + 0 1629 14524 13 9 9 570 0 1 98 1 0 112 1 0 44 30 32 37 0 132 94 1 0 276 3 0 196 4 0 15 chain 32972 chr11 135086622 + 16888975 16889383 LTR7C 471 + 0 408 39537 372 0 1 4 1 0 31 chain 164901 chr11 135086622 + 16906344 16908274 SVA_D 2077 + 58 2077 11418 275 12 8 201 0 40 105 0 40 189 0 36 82 22 24 375 1 0 4 37 10 8 1 0 521 0 4 97 chain 1722 chr11 135086622 + 16907610 16907647 SVA_D 2077 + 1135 1172 42664 37 chain 9197 chr11 135086622 + 16947172 16947308 L1MA8 2339 + 1623 1758 72125 13 13 11 30 0 1 80 chain 3084 chr11 135086622 + 16969861 16969897 MLT1K 546 + 491 527 98943 36 chain 70221 chr11 135086622 + 17038655 17040365 L1M1 2793 + 1372 2469 23946 26 0 2 31 304 0 233 2 0 74 1 5 167 0 2 8 382 66 44 1 0 41 10 9 22 18 17 157 0 1 14 1 5 138 20 19 16 chain 4346 chr11 135086622 + 17059389 17059443 L1M1 2793 + 2632 2685 89198 45 1 0 8 chain 33472 chr11 135086622 + 17085758 17086202 LTR2 463 + 0 463 39113 61 0 3 93 0 5 52 0 5 128 25 28 40 0 3 45 chain 27242 chr11 135086622 + 17144924 17145238 THE1C-int 1605 + 1286 1600 45910 314 chain 12156 chr11 135086622 + 17149025 17149221 MER2 342 + 22 221 66556 21 0 1 4 33 35 138 chain 27874 chr11 135086622 + 17174305 17174614 AluYa5 310 + 0 302 45075 118 6 0 8 1 0 176 chain 7483 chr11 135086622 + 17214871 17214957 L1PA8 5853 + 5767 5853 76168 86 chain 36020 chr11 135086622 + 17243102 17243504 L1PA4 6152 + 5750 6152 37401 402 chain 27344 chr11 135086622 + 17336490 17336782 AluY 311 + 18 311 45771 114 0 1 178 chain 19158 chr11 135086622 + 17424059 17424326 L1PA8 5853 + 5587 5853 57391 23 2 0 10 0 1 72 1 0 47 2 1 10 0 3 6 2 1 92 chain 12457 chr11 135086622 + 17866324 17866511 Tigger3c 601 + 386 579 66055 123 0 1 10 24 29 30 chain 20623 chr11 135086622 + 17869911 17870250 THE1D 372 + 0 332 55604 13 0 2 14 1 0 19 9 0 26 4 5 87 33 34 24 1 0 108 chain 35599 chr11 135086622 + 17916929 17917562 L1PB1 5432 + 4828 5427 37659 275 17 15 20 1 0 9 1 0 9 17 11 53 2 1 16 1 0 40 112 94 20 1 0 13 1 0 18 2 0 5 chain 130965 chr11 135086622 + 18047593 18049366 L1MA2 4263 + 2326 4114 13932 110 0 1 207 0 6 33 0 1 89 11 10 125 4 5 297 0 3 371 4 1 77 1 0 61 4 27 59 3 0 6 5 0 106 0 1 34 11 9 40 0 2 40 19 12 46 1 0 9 chain 3047 chr11 135086622 + 18053144 18053176 U2 167 + 0 32 99334 32 chain 88600 chr11 135086622 + 18058775 18059750 L1PA3long 6157 + 5181 6157 19921 826 0 1 149 chain 19617 chr11 135086622 + 18119142 18119758 MER41C 542 + 224 522 56891 42 345 8 38 0 21 9 1 0 172 1 0 8 chain 138810 chr11 135086622 + 18120430 18122017 SVA_D 2077 + 0 2077 13205 27 3 0 10 3 5 11 0 8 328 1 0 7 1 0 8 0 1 503 0 185 150 0 302 524 3 0 8 chain 15089 chr11 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18649043 18649464 LTR7B 505 + 0 495 40553 108 0 10 57 0 38 12 0 25 28 0 2 85 1 0 23 0 1 52 14 13 41 chain 478864 chr11 135086622 + 18658797 18664286 L1PA5 6144 + 0 5514 3660 691 0 15 97 11 28 339 9 0 445 0 1 1560 1 0 97 3 4 1124 4 0 745 0 5 363 chain 36006 chr11 135086622 + 18667146 18667611 LTR2 463 + 0 463 37410 71 9 0 56 0 3 139 3 4 81 0 1 7 1 0 8 5 7 11 0 1 74 chain 13187 chr11 135086622 + 18679667 18679847 MER50 708 + 498 680 64801 11 10 12 159 chain 14623 chr11 135086622 + 18682025 18682227 MER41B 635 + 0 191 62772 125 15 4 62 chain 57279 chr11 135086622 + 18686987 18691265 MER41-int 2638 + 632 2636 27165 42 1 0 6 0 3 9 2 0 51 2 1 17 638 7 40 368 15 19 2 0 70 0 2 67 2045 1071 40 5 6 77 314 0 16 28 18 10 0 7 226 0 1 183 chain 5959 chr11 135086622 + 18692784 18692851 MER41B 635 + 511 578 81235 67 chain 14738 chr11 135086622 + 18789659 18789938 L1PB1 5432 + 5170 5427 62618 50 2 1 16 1 0 43 1 0 16 1 0 4 18 8 18 3 1 4 1 0 39 1 0 21 7 6 7 1 0 18 2 0 5 chain 30167 chr11 135086622 + 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135086622 + 19319043 19319446 MSTA 426 + 31 426 52240 51 11 0 47 2 0 12 26 29 32 5 6 13 0 1 41 5 0 35 16 21 107 chain 57551 chr11 135086622 + 19324116 19324949 L1PA13 3608 + 2660 3488 27091 347 0 4 6 13 12 131 1 0 19 5 8 34 1 3 22 1 0 27 2 0 61 1 0 57 1 0 3 2 0 39 19 15 18 1 0 22 chain 499371 chr11 135086622 + 19412013 19418107 L1PA7 6471 + 386 6448 3149 24 0 2 14 9 10 242 0 1 38 1 2 172 14 13 694 3 6 653 6 10 15 11 13 225 0 2 115 1 0 4 28 4 16 1 0 883 1 2 195 7 8 1206 1 0 147 0 1 511 0 1 432 17 0 20 0 11 40 19 0 124 0 1 205 chain 23522 chr11 135086622 + 19460531 19460796 L1PA5 6144 + 5866 6142 51549 171 0 11 94 chain 14899 chr11 135086622 + 19545670 19545877 MER30 238 + 0 238 62388 16 0 18 74 5 21 62 3 0 47 chain 23137 chr11 135086622 + 19604702 19605059 THE1B 368 + 0 368 52166 68 22 25 26 12 13 40 2 1 128 2 0 8 0 10 49 chain 76652 chr11 135086622 + 19653937 19654788 L1PA4 6152 + 4185 5037 22404 709 0 1 142 chain 26804 chr11 135086622 + 19740279 19740577 SVA_A 1864 + 1565 1864 46535 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576 0 1 34 3 4 193 0 4 141 0 5 126 0 1 527 0 3 244 0 1 351 9 11 150 2 0 43 chain 26358 chr11 135086622 + 20360974 20361313 MER11A 1151 + 0 435 47186 55 0 99 76 1 0 64 10 6 26 0 2 107 chain 20521 chr11 135086622 + 20386168 20386413 AluSp 311 + 57 295 55754 173 1 0 57 6 0 8 chain 22766 chr11 135086622 + 20513780 20514046 L1PA5 6144 + 5878 6144 52724 266 chain 72872 chr11 135086622 + 20538368 20539460 MER11A 1151 + 0 1151 23340 79 0 8 135 7 6 45 0 5 16 0 11 34 35 0 193 0 12 129 15 18 11 3 4 39 0 4 67 0 2 16 2 60 73 0 1 23 8 7 30 9 1 56 7 6 21 1 0 34 0 1 4 chain 162170 chr11 135086622 + 20547776 20549629 SVA_E 1901 + 1 1901 11601 152 2 0 197 2 1 466 1 0 8 23 23 75 0 46 5 1 0 41 1 0 80 1 0 33 40 0 93 0 1 7 0 49 615 2 0 8 chain 8501 chr11 135086622 + 20559761 20559854 L1PA8 5853 + 5760 5853 73676 93 chain 21266 chr11 135086622 + 20566294 20566552 MLT2A2 560 + 49 307 54808 258 chain 39323 chr11 135086622 + 20567874 20568304 LTR7Y 441 + 0 431 35134 196 0 1 234 chain 290208 chr11 135086622 + 20568315 20571767 HERVH-int 3825 + 1 3760 7124 483 0 56 30 1 0 10 1 0 24 28 0 14 1 0 2 0 18 12 6 26 18 4 3 57 1 2 8 0 2 12 0 3 890 0 1 13 4 31 658 0 1 745 8 218 422 chain 40735 chr11 135086622 + 20572214 20572655 LTR7Y 441 + 0 441 34131 441 chain 314156 chr11 135086622 + 20575359 20578922 L1PA5 6144 + 2565 6143 6527 609 0 8 492 0 3 667 0 4 202 0 1 913 0 3 283 0 1 109 1 4 21 1 0 121 7 0 137 chain 22440 chr11 135086622 + 20610934 20611670 LTR26B 539 + 14 479 53217 40 1 2 16 11 10 10 27 32 78 0 8 48 320 1 30 3 4 46 6 41 57 17 16 26 chain 163987 chr11 135086622 + 20704814 20706675 L1PA4 6152 + 4292 6151 11482 28 1 0 421 2 0 901 1 0 125 1 0 229 2 0 136 0 5 14 chain 3167 chr11 135086622 + 20718169 20718323 MER3 215 + 8 86 98222 38 102 26 14 chain 32414 chr11 135086622 + 20803683 20804118 MLT2A1 477 + 2 477 40030 167 4 1 9 1 2 23 0 1 79 1 0 97 0 4 14 3 41 37 chain 257760 chr11 135086622 + 20889811 20893366 L1PA8A 6298 + 616 6291 8034 331 0 3 140 5 9 32 3 0 135 0 3 333 0 2 294 2 0 610 1 2 126 2 0 410 0 1 4 1 0 102 0 2437 95 5 4 187 329 0 75 0 4 295 0 3 38 chain 29444 chr11 135086622 + 20894989 20895300 AluYa5 310 + 0 310 42683 132 1 0 178 chain 116955 chr11 135086622 + 20896613 20897916 L1PA4 6152 + 4190 5489 16065 876 4 0 423 chain 73795 chr11 135086622 + 20907673 20908663 L1PA8A 6298 + 5292 6290 23141 135 3 4 58 3 11 452 4 1 237 2 3 30 13 14 53 chain 34508 chr11 135086622 + 20959157 20959808 L1PB1 5432 + 4807 5427 38346 10 2 0 119 8 2 143 0 2 20 0 3 8 1 0 20 1 0 13 1 0 11 15 9 49 22 20 41 47 35 15 24 19 24 1 0 22 0 3 5 5 4 19 1 0 4 chain 27551 chr11 135086622 + 20971799 20972196 L1PA8 5853 + 5468 5853 45510 46 2 0 5 0 2 43 1 0 45 2 0 61 26 19 51 2 1 19 1 0 93 chain 151892 chr11 135086622 + 21034374 21036512 L1PA13 3608 + 1333 3492 12237 31 5 17 330 8 12 59 0 3 118 0 2 43 9 12 117 12 24 141 1 0 92 0 1 17 12 14 55 2 1 46 12 4 5 3 0 9 0 1 186 0 1 145 1 0 78 1 0 154 11 12 66 1 0 31 1 0 26 0 1 56 0 6 6 10 5 13 2 0 62 2 1 55 2 1 4 1 0 70 1 0 26 chain 4767 chr11 135086622 + 21037152 21037242 MER3 215 + 64 158 86874 52 20 24 18 chain 7018 chr11 135086622 + 21191361 21191583 MLT1D 503 + 281 499 77537 34 71 65 40 44 46 33 chain 539245 chr11 135086622 + 21271922 21278050 L1PA4 6152 + 6 6143 1385 433 1 0 1379 0 1 567 0 4 775 1 0 76 0 1 1109 0 4 1642 1 2 144 chain 284950 chr11 135086622 + 21290433 21294084 L1PA7 6471 + 890 6465 7284 341 0 4 267 0 1 201 11 1511 21 1 5 113 0 420 222 4 1 30 1 0 366 1 2 192 5 1 88 4 6 273 5 4 189 12 6 38 1 5 110 0 5 309 9 0 60 6 10 19 0 1 427 0 1 225 0 3 92 2 0 6 chain 17289 chr11 135086622 + 21327353 21327573 THE1C 375 + 156 375 59473 192 2 1 26 chain 75633 chr11 135086622 + 21408755 21409591 L1PA3long 6157 + 5321 6157 22679 836 chain 84467 chr11 135086622 + 21491966 21492903 L1PA3long 6157 + 5218 6155 20720 423 1 0 183 0 1 330 chain 13922 chr11 135086622 + 21497156 21497315 L1PA5 6144 + 5983 6139 63710 148 3 0 8 chain 2738 chr11 135086622 + 21545841 21545870 MER5A 189 + 46 75 102055 29 chain 75906 chr11 135086622 + 21551473 21552297 L1PA3long 6157 + 5333 6157 22608 824 chain 209502 chr11 135086622 + 21606640 21609063 L1PA5 6144 + 3697 6131 9364 208 0 5 431 0 4 703 0 1 36 4 0 12 0 1 50 1 0 146 1 0 227 0 2 8 0 1 145 5 7 258 0 1 188 chain 116539 chr11 135086622 + 21642305 21643911 THE1B-int 1605 + 1 1600 16124 23 0 2 203 5 0 64 0 1 104 70 53 296 0 9 20 0 1 178 6 7 46 4 5 325 3 2 6 0 1 253 chain 83240 chr11 135086622 + 21685849 21686778 L1PA4 6152 + 5202 6143 20977 95 0 5 274 0 7 560 chain 106456 chr11 135086622 + 21696072 21697384 L1PA7 6471 + 1609 2910 17497 264 0 1 77 16 4 385 0 1 157 1 3 140 5 1 259 0 1 8 chain 3900 chr11 135086622 + 21711151 21711201 MLT1H2 457 + 401 451 92126 50 chain 42892 chr11 135086622 + 21735056 21735548 L1PA4 6152 + 5650 6143 32840 198 3 4 291 chain 8542 chr11 135086622 + 21813964 21814084 HERVL18-int 2198 + 595 717 73590 31 7 8 44 0 1 38 chain 20972 chr11 135086622 + 21844377 21844731 THE1B 368 + 0 368 55170 43 14 29 59 11 14 19 6 5 27 5 3 94 2 0 13 6 7 55 chain 119458 chr11 135086622 + 21849037 21850510 L1P3 4156 + 2661 4139 15617 26 0 1 371 1 0 35 3 7 393 0 1 52 1 5 543 1 0 12 2 0 7 2 1 24 chain 18271 chr11 135086622 + 21942312 21942657 THE1C 375 + 0 375 58392 32 93 123 30 8 9 156 1 0 25 chain 72449 chr11 135086622 + 22001092 22001982 L1P1 4361 + 17 901 23439 176 0 1 6 0 1 373 1 0 128 12 5 194 chain 464422 chr11 135086622 + 22024992 22031085 L1PA7 6471 + 5 6463 4010 191 0 1 4 12 10 15 37 43 24 134 366 62 8 18 54 35 110 144 0 21 319 0 3 594 0 1 157 1 0 378 0 2 53 0 2 55 0 1 73 0 4 479 1 0 290 8 7 7 0 1 5 1 2 19 4 5 792 0 2 589 5 6 200 0 2 504 2 1 515 0 2 25 0 1 142 2 5 5 1 0 147 chain 23027 chr11 135086622 + 22034144 22034428 L1PA7 6471 + 6182 6467 52317 125 0 7 7 6 0 146 chain 19831 chr11 135086622 + 22065142 22065394 MLT2A2 560 + 2 258 56637 13 0 4 239 chain 8165 chr11 135086622 + 22086909 22087011 LTR54 533 + 426 529 74495 91 0 1 11 chain 13907 chr11 135086622 + 22106548 22106843 THE1B 368 + 0 353 63728 44 31 71 4 1 0 50 1 0 29 33 51 27 23 25 52 chain 100611 chr11 135086622 + 22112179 22113364 L1PA6 6164 + 4974 6159 18224 334 1 3 681 1 2 160 3 0 5 chain 3634 chr11 135086622 + 22117714 22117772 Tigger1 2417 + 2250 2308 94159 7 1 0 14 3 4 33 chain 118416 chr11 135086622 + 22122140 22123620 L1PA6 6164 + 4316 6156 15816 327 1 0 199 0 351 124 1 5 211 6 7 53 0 5 402 2 1 7 0 1 147 chain 81746 chr11 135086622 + 22127010 22128055 MER11C 1089 + 0 1063 21289 247 4 13 53 0 4 373 1 5 4 1 0 38 0 1 127 0 1 54 1 0 117 0 1 25 chain 12626 chr11 135086622 + 22178714 22178913 THE1C 375 + 154 354 65763 18 26 25 6 0 3 144 1 0 4 chain 14766 chr11 135086622 + 22191317 22191563 THE1B 368 + 117 368 62580 52 6 5 22 10 18 10 18 16 128 chain 545019 chr11 135086622 + 22284810 22290788 L1PA2 6032 + 4 6032 1028 446 0 34 457 0 2 177 0 1 2017 0 8 952 0 3 634 0 2 1295 chain 57917 chr11 135086622 + 22292023 22292664 L1PA2 6032 + 4927 5572 26992 249 0 4 392 chain 3948 chr11 135086622 + 22325405 22325450 MER51B 395 + 350 395 91778 45 chain 44845 chr11 135086622 + 22428270 22428795 L1PA7 6471 + 5935 6461 31668 387 0 1 138 chain 26083 chr11 135086622 + 22537426 22537722 L1PA4 6152 + 5855 6151 47600 296 chain 7989 chr11 135086622 + 22576801 22576968 L1MA3 4352 + 4188 4325 74906 16 1 3 51 2 0 24 1 0 6 1 0 20 29 1 16 chain 95626 chr11 135086622 + 22607692 22608775 L1PA4 6152 + 4100 5184 18827 433 6 7 644 chain 7406 chr11 135086622 + 22688350 22688440 5S 121 + 0 90 76375 90 chain 91922 chr11 135086622 + 22698076 22710168 L1PA3long 6157 + 3201 6153 19354 685 10813 1674 338 1 0 255 chain 30080 chr11 135086622 + 22746228 22746689 L1PA16 3655 + 3106 3578 41975 83 40 44 59 2 0 84 8 17 185 chain 55130 chr11 135086622 + 22834186 22834928 MER4E1 777 + 0 777 27831 110 2 0 5 6 8 211 0 19 83 0 1 73 1 0 28 4 12 71 0 1 27 5 6 10 0 6 106 chain 268686 chr11 135086622 + 22908782 22911722 L1PA3long 6157 + 3217 6157 7744 1247 8 6 1459 0 2 226 chain 28729 chr11 135086622 + 22959868 22960177 AluYg6 310 + 0 309 43747 309 chain 151275 chr11 135086622 + 23008720 23010404 L1PA3long 6157 + 4468 6157 12267 413 0 4 421 0 1 850 chain 3946 chr11 135086622 + 23024582 23024628 MADE1 96 + 50 96 91785 46 chain 26207 chr11 135086622 + 23084196 23084490 L1HS 6032 + 355 649 47404 294 chain 48565 chr11 135086622 + 23162779 23163415 L1PA8 5853 + 5213 5853 30097 253 0 4 40 9 13 41 1 0 44 2 0 70 2 1 15 1 0 46 2 1 17 0 2 93 chain 228329 chr11 135086622 + 23217408 23220006 L1PA5 6144 + 2783 5383 8792 130 1 0 345 0 2 237 0 1 819 0 1 976 1 0 89 chain 93364 chr11 135086622 + 23261025 23262059 L1PA5 6144 + 4058 5092 19136 1034 chain 486601 chr11 135086622 + 23320987 23326733 L1PA5 6144 + 0 5755 3501 134 7 21 183 30 0 9 5 35 99 1 0 71 0 1 167 0 1 340 0 1 107 9 0 371 0 1 398 1 0 135 7 5 594 4 7 490 2 0 374 0 1 130 1 0 672 0 4 943 1 0 461 chain 39054 chr11 135086622 + 23367576 23368080 L1PA8 5853 + 5357 5853 35315 209 1 0 42 2 0 70 2 1 10 1 0 51 2 1 19 1 0 46 1 0 47 chain 4735 chr11 135086622 + 23400471 23400522 LTR12C 1709 + 1658 1709 87054 51 chain 45756 chr11 135086622 + 23413888 23414412 L1PA4 6152 + 5628 6152 31186 371 7 0 7 0 7 139 chain 59996 chr11 135086622 + 23420583 23421257 L1PA5 6144 + 5467 6141 26374 674 chain 150440 chr11 135086622 + 23433733 23435376 L1PA3long 6157 + 2593 4237 12320 658 0 1 985 chain 59210 chr11 135086622 + 23441001 23441762 LTR17 781 + 0 757 26603 39 2 0 145 4 0 135 12 11 55 1 4 368 chain 44848 chr11 135086622 + 23446043 23446575 L1PA5 6144 + 5598 6131 31667 207 0 1 325 chain 500412 chr11 135086622 + 23483717 23490185 L1PA7 6471 + 3 6469 3114 93 4 5 88 1 0 5 6 7 76 0 1 7 11 10 117 11 2 176 7 8 559 1 3 180 0 1 38 14 2 12 0 3 317 0 4 8 6 11 33 0 4 121 0 3 138 1 0 24 0 1 80 1 2 119 1 0 331 0 5 35 20 0 506 31 31 56 8 12 286 0 2 311 1 0 70 0 1 1022 0 1 25 1 0 644 4 5 10 0 3 21 0 1 61 0 2 6 3 4 84 1 2 211 2 1 82 37 34 193 3 4 136 2 0 10 chain 27080 chr11 135086622 + 23521920 23522239 L1PA7 6471 + 6139 6458 46151 319 chain 30217 chr11 135086622 + 23541648 23542102 LTR7B 505 + 0 495 41834 107 1 11 57 0 38 12 3 27 28 29 0 87 1 0 74 14 13 41 chain 125228 chr11 135086622 + 23633702 23635202 L1PA6 6164 + 4485 5985 14661 1500 chain 7984 chr11 135086622 + 23641785 23641931 L1MA1 4479 + 4033 4172 74914 42 10 9 22 3 1 35 1 0 9 1 0 6 4 2 13 chain 3163 chr11 135086622 + 23692235 23692274 MER67C 710 + 78 117 98258 39 chain 24964 chr11 135086622 + 23709978 23710306 L1M1 2793 + 1288 1614 49341 185 9 7 134 chain 497361 chr11 135086622 + 23731597 23738035 L1PA7 6471 + 7 6461 3225 59 5 1 100 0 16 44 15 0 186 6 1 195 4 3 173 1 0 44 1 2 373 0 1 4 1 0 123 6 0 7 10 16 17 0 1 764 5 0 92 12 10 87 0 1 125 4 0 181 3 4 95 0 1 100 0 2 390 27 27 194 4 5 31 0 2 35 7 4 26 0 4 456 0 1 174 0 2 15 1 0 273 1 20 528 0 3 306 2 3 82 1 0 61 0 1 143 1 0 23 6 8 5 1 0 53 2 0 293 0 2 153 0 1 4 1 0 215 1 2 81 chain 121561 chr11 135086622 + 23792098 23793412 L1PA2 6032 + 3318 4632 15247 1314 chain 3238 chr11 135086622 + 23849779 23849849 U6 107 + 6 74 97586 28 22 20 20 chain 14034 chr11 135086622 + 23857873 23858065 MER30 238 + 31 236 63538 82 8 20 98 0 1 4 chain 61651 chr11 135086622 + 23876881 23877572 L1PA4 6152 + 5454 6152 25954 685 0 7 6 chain 33394 chr11 135086622 + 24026041 24026507 LTR15 485 + 2 478 39182 37 5 9 102 0 2 124 0 4 89 9 11 57 1 0 5 2 0 16 0 1 19 chain 6975 chr11 135086622 + 24037805 24037883 THE1B 368 + 290 368 77686 78 chain 228051 chr11 135086622 + 24071413 24074048 L1PA5 6144 + 3423 6078 8806 5 0 3 251 2 0 888 0 2 57 0 5 69 0 1 266 0 1 326 0 4 81 3 7 297 0 2 32 0 1 170 3 1 109 0 1 76 chain 4324 chr11 135086622 + 24078904 24078955 LTR38 553 + 119 170 89325 51 chain 52837 chr11 135086622 + 24131432 24132161 LTR12 884 + 0 884 28631 25 1 0 6 4 7 17 0 107 156 3 28 19 2 1 12 16 38 468 chain 126844 chr11 135086622 + 24183592 24185022 L1PA3long 6157 + 4718 6157 14432 638 1 2 623 0 2 151 0 6 17 chain 515717 chr11 135086622 + 24217113 24223257 L1PA5 6144 + 3 6144 2484 431 6 0 420 3 0 294 3 6 254 1 6 831 0 2 9 2 0 434 6 11 475 1 0 82 0 2 9 10 11 994 0 1 23 1 0 13 1 2 13 3 0 155 0 2 328 1 2 483 11 0 371 19 21 197 1 0 259 chain 567451 chr11 135086622 + 24327951 24333981 L1HS 6032 + 1 6032 29 73 0 1 5957 chain 21253 chr11 135086622 + 24361288 24361662 THE1B 368 + 0 368 54819 64 5 19 6 13 0 30 41 41 12 2 1 127 7 0 7 0 1 60 chain 112080 chr11 135086622 + 24388312 24389519 L1PA2 6032 + 3927 5134 16801 1207 chain 28851 chr11 135086622 + 24401635 24401941 AluYg6 310 + 0 306 43557 306 chain 27796 chr11 135086622 + 24405467 24405841 HSMAR1 1287 + 24 403 45189 69 0 3 20 21 23 264 chain 14841 chr11 135086622 + 24416601 24416840 THE1D 372 + 102 357 62460 61 29 31 25 5 6 109 0 13 10 chain 21146 chr11 135086622 + 24428225 24428570 MER34B 572 + 164 517 54955 38 2 1 20 8 7 142 1 7 42 33 37 59 chain 73655 chr11 135086622 + 24446093 24447052 LTR5_Hs 974 + 0 974 23183 115 5 13 161 0 1 177 0 1 188 1 0 105 0 1 57 8 15 19 20 18 103 chain 20371 chr11 135086622 + 24451541 24451773 L1PA5 6144 + 4425 4657 55927 232 chain 128537 chr11 135086622 + 24451773 24453254 L1PA5 6144 + 4658 6144 14214 167 0 1 471 0 4 843 chain 81458 chr11 135086622 + 24486899 24487817 L1PA4 6152 + 4267 5186 21341 221 0 2 539 1 0 157 chain 6968 chr11 135086622 + 24540315 24540596 MLT1A 405 + 56 353 77717 61 2 0 5 3 5 10 159 176 21 1 0 19 chain 5450 chr11 135086622 + 24551267 24551333 L1MB8 1703 + 1439 1505 83460 66 chain 12402 chr11 135086622 + 24559952 24560100 L1PA7 6471 + 6288 6436 66134 148 chain 26665 chr11 135086622 + 24561495 24561826 L1PA7 6471 + 6141 6464 46736 89 8 0 234 chain 139288 chr11 135086622 + 24657368 24658952 L1PA4 6152 + 3929 5522 13157 186 0 1 104 1 0 124 0 4 805 0 1 150 0 4 214 chain 42133 chr11 135086622 + 24694497 24695077 L1PA8 5853 + 5270 5838 33284 294 1 0 44 2 0 17 0 1 51 26 18 44 3 2 19 5 4 74 chain 4185 chr11 135086622 + 24714055 24714128 MER2 342 + 135 215 90227 36 2 0 18 1 10 16 chain 9374 chr11 135086622 + 24714151 24714301 L1PA8 5853 + 5698 5852 71761 42 2 1 13 7 6 64 1 7 21 chain 26384 chr11 135086622 + 24773945 24774332 MLT2A1 477 + 0 382 47142 168 7 4 7 0 1 24 0 1 101 0 6 14 3 1 20 22 14 21 chain 40064 chr11 135086622 + 24835055 24835532 L1PA8 5853 + 4441 4918 34610 477 chain 17261 chr11 135086622 + 24896830 24897184 LTR12C 1709 + 875 1194 59503 137 41 0 56 2 17 7 15 0 17 44 50 35 chain 1707 chr11 135086622 + 24896967 24896999 LTR12C 1709 + 734 766 60955 32 chain 2347 chr11 135086622 + 24897105 24897149 LTR12C 1709 + 790 834 60955 44 chain 13204 chr11 135086622 + 24918460 24918609 L1PA5 6144 + 3880 4029 64770 149 chain 181228 chr11 135086622 + 25024213 25026296 L1PA5 6144 + 4048 6138 10538 428 0 2 711 0 1 202 0 3 411 1 2 330 chain 53711 chr11 135086622 + 25044606 25045217 L1PA4 6152 + 5537 6151 28318 112 0 1 357 0 2 142 chain 61892 chr11 135086622 + 25067536 25068311 L1PA7 6471 + 5671 6456 25891 37 1 2 163 0 4 39 0 1 40 0 4 341 1 0 13 0 1 140 chain 16822 chr11 135086622 + 25071631 25071828 L1PA5 6144 + 5946 6143 60006 197 chain 31469 chr11 135086622 + 25127670 25128044 L1PA7 6471 + 6097 6466 40758 200 2 1 23 2 0 138 2 0 7 chain 66181 chr11 135086622 + 25191212 25191965 L1PA4 6152 + 4270 5027 24913 78 0 4 675 chain 70571 chr11 135086622 + 25281775 25282639 L1P1 4361 + 3150 4033 23851 53 1 2 634 0 18 176 chain 129600 chr11 135086622 + 25305613 25307206 L1PA7 6471 + 4857 6461 14084 98 2 0 28 6 8 511 0 2 117 1 2 68 0 1 19 1 11 123 0 1 463 1 0 14 0 1 89 4 0 48 chain 64867 chr11 135086622 + 25365269 25365996 L1PA5 6144 + 4648 5379 25222 649 0 4 78 chain 54955 chr11 135086622 + 25399333 25399935 L1PA3long 6157 + 5555 6157 27890 602 chain 25930 chr11 135086622 + 25414792 25415117 L1PA7 6471 + 6133 6458 47819 206 0 1 103 1 0 15 chain 5391 chr11 135086622 + 25423313 25423382 L1MA5A 2387 + 1865 1942 83740 53 0 8 16 chain 537445 chr11 135086622 + 25425134 25431158 L1PA3long 6157 + 0 6156 1485 152 0 1 187 0 1 435 0 128 1251 0 1 1010 0 1 41 0 1 6 1 0 300 0 1 1394 1 0 1246 chain 5886 chr11 135086622 + 25534316 25534387 MLT1D 503 + 432 503 81537 71 chain 91570 chr11 135086622 + 25540714 25541727 LTR5A 1029 + 0 1029 19401 134 0 13 635 1 4 243 chain 66210 chr11 135086622 + 25616475 25617213 L1PA5 6144 + 4990 5732 24906 307 0 4 431 chain 39503 chr11 135086622 + 25636719 25637159 L1P1 4361 + 1924 2364 35009 440 chain 44816 chr11 135086622 + 25657126 25657624 L1PA5 6144 + 5108 5607 31690 137 0 1 361 chain 6374 chr11 135086622 + 25732102 25732198 L1PA10 4194 + 4058 4150 79766 24 1 0 15 0 1 6 1 0 12 3 0 34 chain 134495 chr11 135086622 + 25747150 25748650 L1PA4 6152 + 3671 5174 13595 269 0 1 242 0 1 818 0 1 171 chain 3428 chr11 135086622 + 25752723 25752821 L1MA7 2200 + 1994 2083 95836 4 0 1 26 45 35 23 chain 3056 chr11 135086622 + 25756558 25756590 LTR12C 1709 + 931 963 99247 32 chain 11872 chr11 135086622 + 25756618 25756846 LTR12C 1709 + 913 1064 67068 109 77 0 42 chain 508547 chr11 135086622 + 25758052 25764454 L1PA7 6471 + 58 6466 2819 345 1 3 68 1 0 338 3 0 622 20 34 46 23 2 109 0 1 381 1 9 80 1 3 66 0 4 289 0 3 169 5 2 7 0 3 45 2 1 223 0 5 568 10 10 112 2 0 221 8 2 263 0 1 575 0 4 290 0 1 183 5 6 380 0 1 88 2 1 84 1 0 78 2 3 667 6 0 12 chain 70910 chr11 135086622 + 25815307 25816119 L1PA4 6152 + 4615 5431 23776 14 1 0 373 0 1 301 0 4 123 chain 530512 chr11 135086622 + 25831297 25837418 L1PA5 6144 + 0 6141 1806 209 1 3 552 0 1 107 0 1 346 0 1 974 0 2 1482 1 0 659 0 4 442 0 2 285 1 2 221 0 5 79 0 1 432 0 1 171 5 0 8 6 11 140 chain 55713 chr11 135086622 + 25878633 25879284 L1PA5 6144 + 3388 4038 27659 487 4 3 160 chain 28398 chr11 135086622 + 25879452 25879768 L1PA5 6144 + 4184 4500 44273 316 chain 70398 chr11 135086622 + 25956587 25957393 L1PA4 6152 + 5271 6084 23895 30 0 5 387 0 1 123 0 1 266 chain 21695 chr11 135086622 + 26001122 26001394 HERV17-int 4347 + 13 280 54233 14 1 0 51 1 0 35 2 0 26 1 0 141 chain 215207 chr11 135086622 + 26001728 26004341 HERV17-int 4347 + 13 4347 9168 14 1 0 51 1 0 35 2 0 26 1 0 466 18 15 8 0 1 642 0 4 143 1 0 50 5 0 214 1 0 37 4 0 341 0 1672 112 0 63 440 chain 54035 chr11 135086622 + 26029410 26030003 L1PA3long 6157 + 5562 6155 28216 593 chain 34860 chr11 135086622 + 26030129 26030550 LTR7C 471 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47 5 1 124 2 1 19 6 0 15 19 20 79 5 13 49 chain 12900 chr11 135086622 + 26273694 26273861 Tigger2 2703 + 1922 2088 65256 162 1 0 4 chain 84078 chr11 135086622 + 26317297 26318263 L1PA7 6471 + 5496 6465 20786 204 1 4 761 chain 61866 chr11 135086622 + 26338178 26338943 LTR12 884 + 0 869 25897 24 1 0 31 0 107 216 2 0 491 chain 26600 chr11 135086622 + 26366909 26367204 L1PA5 6144 + 4785 5080 46831 295 chain 110989 chr11 135086622 + 26395621 26396952 L1PA7 6471 + 5136 6469 16937 223 0 2 224 0 1 35 0 3 261 8 3 248 0 2 157 4 3 171 chain 105385 chr11 135086622 + 26407965 26409129 L1PA4 6152 + 4981 6143 17630 1105 2 0 57 chain 53553 chr11 135086622 + 26414035 26414755 L1PA8 5853 + 5139 5852 28375 420 6 5 44 2 0 70 2 1 10 1 0 51 2 1 19 1 0 92 chain 550630 chr11 135086622 + 26451096 26457225 L1PA3long 6157 + 0 6147 695 553 0 1 404 0 4 227 0 3 514 0 1 1083 4 8 834 0 4 728 0 2 275 1 0 1506 chain 25029 chr11 135086622 + 26487103 26487435 THE1A 353 + 0 333 49236 110 1 0 92 1 0 108 8 11 12 chain 14821 chr11 135086622 + 26488216 26488399 THE1A-int 1579 + 442 628 62498 90 0 1 34 0 1 15 0 1 44 chain 3954 chr11 135086622 + 26533363 26533410 MADE1 96 + 49 96 91732 47 chain 98694 chr11 135086622 + 26540245 26541451 L1PA7 6471 + 4121 6466 18450 177 0 1128 4 0 1 126 6 12 53 1 3 24 0 1 488 0 1 327 chain 16012 chr11 135086622 + 26729166 26729366 MER107 203 + 0 203 61013 167 1 4 32 chain 105060 chr11 135086622 + 26732285 26733756 THE1B-int 1605 + 129 1594 17676 33 15 8 116 0 2 142 37 21 230 58 59 11 3 4 134 5 6 101 1 2 70 0 10 352 0 1 163 chain 7708 chr11 135086622 + 26820103 26820196 LTR40b 463 + 370 463 75609 93 chain 5310 chr11 135086622 + 26839519 26839589 MLT1A1 405 + 319 389 84152 28 1 0 4 0 1 37 chain 46619 chr11 135086622 + 26869521 26875814 L1PB2 3958 + 243 3838 30808 196 0 2 22 14 0 163 3 4 27 0 1 150 5440 2755 22 0 1 31 1 0 9 6 7 48 1 0 74 2 0 19 2 1 63 chain 25886 chr11 135086622 + 26883939 26884215 AluYa5 310 + 34 310 47886 276 chain 382885 chr11 135086622 + 26884216 26888649 L1PA3long 6157 + 1708 6157 5429 202 0 1 41 1 0 365 14 12 44 0 1 841 0 1 4 0 1 88 0 1 376 0 1 258 1 2 97 6 7 306 0 4 941 1 0 447 0 8 400 chain 95808 chr11 135086622 + 26888661 26889782 L1PA6 6164 + 5028 6156 18796 4 0 1 978 0 7 34 1 0 104 chain 15732 chr11 135086622 + 26889851 26890052 THE1B-int 1605 + 1403 1605 61371 176 1 2 24 chain 34476 chr11 135086622 + 26901845 26902295 L1PA7 6471 + 6023 6461 38374 175 2 1 76 21 12 65 0 1 101 3 0 7 chain 552816 chr11 135086622 + 26965118 26971134 L1PA2 6032 + 5 6029 558 251 1 0 4926 0 4 393 0 1 379 0 4 66 chain 36006 chr11 135086622 + 26971150 26971558 L1PA5 6144 + 5729 6138 37411 81 1 2 326 chain 21718 chr11 135086622 + 26985030 26985316 L1PA7 6471 + 6190 6468 54208 27 8 1 217 0 1 23 2 0 9 chain 214744 chr11 135086622 + 27071615 27074068 L1PA5 6144 + 3676 6139 9184 392 1 0 67 8 9 463 0 1 324 0 7 406 0 2 35 0 1 516 2 1 239 chain 230001 chr11 135086622 + 27104681 27107362 L1P1 4361 + 570 3254 8748 567 6 8 43 4 0 365 0 2 640 0 2 96 0 1 20 1 0 109 0 3 230 1 0 512 1 0 86 chain 32241 chr11 135086622 + 27146674 27147088 L1PA8 5853 + 5437 5853 40159 58 0 8 17 0 1 43 1 0 46 2 0 69 1 0 9 6 5 47 2 1 19 1 0 93 chain 7986 chr11 135086622 + 27170034 27170132 L1PA16 3655 + 2477 2574 74912 84 1 0 13 chain 5498 chr11 135086622 + 27173312 27173405 L1PA16 3655 + 3490 3582 83239 52 0 2 5 12 10 19 1 0 4 chain 6014 chr11 135086622 + 27189686 27189765 L1PB1 5432 + 5346 5422 81022 24 1 0 23 1 0 11 1 0 18 chain 27450 chr11 135086622 + 27218789 27219203 MER51B 395 + 0 395 45640 34 18 5 97 11 0 30 4 5 74 1 0 4 1 2 82 1 5 57 chain 552147 chr11 135086622 + 27219703 27225730 L1PA2 6032 + 3 6030 598 253 1 0 5623 0 1 150 chain 4209 chr11 135086622 + 27229916 27229968 MER58C 217 + 165 216 90067 32 1 0 19 chain 3038 chr11 135086622 + 27305275 27305329 MER52A 1651 + 891 1000 99442 27 0 62 13 7 0 7 chain 4934 chr11 135086622 + 27320941 27321196 LTR16B2 458 + 126 382 85981 20 39 44 14 46 45 4 1 0 18 0 2 6 1 0 7 4 0 18 52 53 25 chain 507175 chr11 135086622 + 27321301 27327592 L1PA6 6164 + 151 6162 2881 84 0 6 184 2 3 139 1 0 918 308 0 243 1 0 603 1 2 321 4 9 113 1 4 410 0 1 31 0 1 307 2 0 514 0 3 229 0 3 525 0 2 37 0 5 111 9 0 333 0 4 825 0 8 25 2 0 8 chain 21597 chr11 135086622 + 27341837 27342177 THE1B 368 + 0 368 54363 39 40 73 56 4 0 6 0 2 24 2 0 93 1 0 75 chain 69709 chr11 135086622 + 27446419 27447201 L1PA5 6144 + 5368 6143 24072 767 7 0 8 chain 16996 chr11 135086622 + 27461520 27461745 MER30 238 + 0 238 59809 105 7 20 113 chain 27132 chr11 135086622 + 27539836 27540199 THE1C 375 + 13 375 46078 158 16 16 162 1 0 26 chain 15023 chr11 135086622 + 27568330 27568672 L1PB1 5432 + 5105 5420 62240 9 3 0 33 1 0 8 8 4 9 2 0 16 0 6 30 2 1 16 1 0 38 13 11 9 1 0 7 16 6 19 2 0 4 1 0 12 3 1 26 1 0 20 2 1 13 1 0 16 chain 29627 chr11 135086622 + 27647141 27647454 AluYb8 318 + 1 314 42455 313 chain 490599 chr11 135086622 + 27665301 27671317 L1PA5 6144 + 0 6144 3405 121 0 14 138 1 0 896 9 0 25 15 14 164 0 8 393 0 2 691 0 1 244 1 0 352 0 8 438 5 3 62 0 4 302 0 2 51 4 5 690 1 0 634 0 1 207 0 2 14 270 370 288 chain 78285 chr11 135086622 + 27774864 27776092 L1PA6 6164 + 5253 6161 22031 238 0 2 511 1 2 29 323 0 126 chain 29038 chr11 135086622 + 27775655 27775962 AluYk11 308 + 0 307 43266 307 chain 2719 chr11 135086622 + 27829082 27829156 L1MC4a 1092 + 731 808 102192 13 15 17 16 7 8 23 chain 12568 chr11 135086622 + 27880085 27880377 MSTD 398 + 0 398 65858 22 1 0 49 0 1 43 113 219 64 chain 554670 chr11 135086622 + 27939073 27945209 L1PA3long 6157 + 5 6142 434 259 1 0 52 5 6 2689 0 1 3130 chain 19615 chr11 135086622 + 27958505 27958894 THE1D 372 + 11 371 56892 45 78 46 62 34 36 25 1 0 55 3 5 86 chain 109991 chr11 135086622 + 28001447 28002978 THE1B-int 1605 + 23 1605 17080 11 0 2 144 8 11 86 0 1 154 0 25 8 0 2 188 40 0 9 2 43 4 1 0 168 0 1 151 6 20 81 23 23 21 1 0 171 4 5 13 0 1 33 0 1 195 0 1 9 chain 5835 chr11 135086622 + 28018668 28018748 MADE1 96 + 0 96 81761 29 0 16 51 chain 314248 chr11 135086622 + 28028165 28031691 L1PA5 6144 + 2617 6144 6525 3222 0 1 304 chain 38140 chr11 135086622 + 28045783 28046200 L1PA3long 6157 + 5232 5653 35961 78 0 4 339 chain 45740 chr11 135086622 + 28046202 28046701 L1PA3long 6157 + 5653 6152 31191 499 chain 10898 chr11 135086622 + 28064474 28064600 L1PA6 6164 + 6027 6153 68701 126 chain 41073 chr11 135086622 + 28067901 28068436 L1PA8 5853 + 5328 5853 33919 150 8 4 82 1 0 44 2 0 67 9 8 57 2 1 21 1 0 91 chain 81130 chr11 135086622 + 28084883 28085852 LTR13A 966 + 0 966 21404 644 18 17 12 1 0 180 2 1 112 chain 55335 chr11 135086622 + 28101850 28102594 MER4E 760 + 0 751 27766 23 0 1 85 2 0 5 1 3 17 0 1 43 1 0 102 5 6 85 10 12 41 5 8 319 chain 2975 chr11 135086622 + 28111789 28111821 MIR 256 + 224 256 100097 32 chain 226321 chr11 135086622 + 28157124 28159885 HERVL-int 5654 + 2892 5654 8855 323 1 0 134 6 11 707 1 2 832 0 3 164 5 0 157 10 5 353 0 3 68 chain 23936 chr11 135086622 + 28159890 28160331 MLT2A1 477 + 5 477 50888 101 13 12 51 4 1 11 1 0 20 0 5 101 73 110 9 6 0 51 chain 83191 chr11 135086622 + 28271700 28272730 L1PA7 6471 + 5439 6469 20985 44 0 1 128 0 1 13 0 3 69 0 2 11 15 11 732 4 1 14 chain 12468 chr11 135086622 + 28274803 28274941 L1PA5 6144 + 6001 6139 66037 138 chain 16220 chr11 135086622 + 28285262 28285478 MER30 238 + 0 238 60718 115 0 23 54 3 0 9 0 2 35 chain 81293 chr11 135086622 + 28340358 28341324 L1PA7 6471 + 5493 6468 21370 124 1 4 194 0 1 315 0 1 279 1 5 52 chain 134924 chr11 135086622 + 28367426 28369151 L1PA7 6471 + 4744 6459 13545 62 0 4 40 8 47 221 0 3 162 0 2 131 1 0 81 65 9 115 1 0 397 1 0 118 0 1 222 3 0 5 0 3 92 chain 240091 chr11 135086622 + 28395464 28398217 L1PA5 6144 + 3340 6131 8469 127 0 2 11 0 7 535 1 4 315 0 4 965 0 3 497 1 2 84 1 0 52 0 1 81 1 19 82 chain 161275 chr11 135086622 + 28429395 28431800 SVA_F 1814 + 10 1814 11664 695 0 40 154 273 0 49 303 14 178 78 0 664 1 0 10 chain 2183 chr11 135086622 + 28430283 28430327 SVA_F 1814 + 1080 1124 58816 44 chain 10870 chr11 135086622 + 28430327 28430469 SVA_F 1814 + 933 1091 42043 14 0 15 25 0 1 103 chain 11712 chr11 135086622 + 28430566 28430719 SVA_F 1814 + 1139 1291 42043 135 1 0 17 chain 8936 chr11 135086622 + 28430719 28430814 SVA_F 1814 + 1165 1260 72699 95 chain 2346 chr11 135086622 + 28430836 28430869 SVA_F 1814 + 865 898 48648 33 chain 5546 chr11 135086622 + 28431047 28431125 SVA_F 1814 + 1013 1091 48648 78 chain 45534 chr11 135086622 + 28436778 28437335 MLT2A2 560 + 0 560 31291 310 1 0 240 0 4 6 chain 3158 chr11 135086622 + 28482710 28482746 MER5A 189 + 37 73 98287 36 chain 114170 chr11 135086622 + 28640424 28641683 L1PA4 6152 + 3855 5114 16529 1259 chain 462488 chr11 135086622 + 28641728 28647425 L1PA7 6471 + 687 6468 4065 55 14 19 195 12 59 8 0 10 177 0 4 38 0 19 458 4 8 315 1 3 586 25 7 448 0 4 728 0 1 184 0 1 56 1 2 4 1 0 262 0 1 29 0 1 686 0 1 88 0 4 280 0 1 192 1 0 15 0 3 602 4 0 211 1 0 16 chain 12232 chr11 135086622 + 28781817 28781958 L1PA5 6144 + 5990 6131 66416 141 chain 4234 chr11 135086622 + 28878127 28878388 Charlie6 786 + 391 624 89919 30 194 166 37 chain 198823 chr11 135086622 + 28883211 28885674 L1PA6 6164 + 3656 6156 9751 232 0 1 270 0 1 27 0 9 64 0 1 111 9 12 74 10 28 159 1 0 10 11 12 646 0 3 686 0 1 153 chain 96032 chr11 135086622 + 28890559 28891974 LTR12C 1709 + 0 1709 18772 209 0 107 22 0 43 79 6 5 8 15 0 121 8 0 29 2 3 36 0 119 56 1 0 144 78 0 90 0 47 89 24 0 17 11 4 169 0 102 86 0 10 32 1 0 82 chain 2020 chr11 135086622 + 28891303 28891344 LTR12C 1709 + 1118 1159 80325 41 chain 32311 chr11 135086622 + 28952511 28952862 L1PA3long 6157 + 4953 5304 40107 351 chain 32126 chr11 135086622 + 28971261 28971708 MLT2A1 477 + 0 477 40248 88 0 1 74 9 0 6 0 6 4 0 1 24 0 1 180 10 0 12 3 43 37 chain 36168 chr11 135086622 + 28979124 28979520 L1PA3long 6157 + 4040 4436 37295 396 chain 34371 chr11 135086622 + 28989062 28989601 MLT2A2 560 + 0 560 38449 84 1 0 30 1 0 49 54 53 190 0 11 8 0 1 26 0 1 7 1 7 24 37 42 27 chain 3552 chr11 135086622 + 29007670 29007852 Tigger5 388 + 196 388 94835 23 125 135 34 chain 41174 chr11 135086622 + 29016644 29017191 L1PA7 6471 + 5923 6454 33856 41 15 0 116 1 2 239 5 3 130 chain 55520 chr11 135086622 + 29042743 29043615 L1PA14 3548 + 2584 3443 27710 44 2 1 59 1 0 64 1 0 76 11 20 81 12 10 14 2 0 16 0 6 25 2 0 5 2 0 24 4 5 80 4 0 17 2 0 6 1 0 84 1 0 111 1 0 9 4 0 36 5 3 13 1 0 5 1 0 16 1 0 29 chain 85483 chr11 135086622 + 29050742 29051784 L1PA5 6144 + 5 1043 20538 115 14 0 14 3 17 308 0 1 573 1 0 3 4 0 7 chain 123551 chr11 135086622 + 29077882 29079447 THE1A-int 1579 + 2 1574 14922 167 3 1 7 1 0 155 3 1 353 1 0 113 0 9 177 5 6 72 1 0 50 7 11 450 chain 23052 chr11 135086622 + 29079459 29079808 THE1A 353 + 7 353 52289 6 2 0 67 1 0 4 0 1 25 1 0 92 33 33 118 chain 82293 chr11 135086622 + 29104853 29106079 MER11A 1151 + 0 1151 21178 19 135 36 121 8 0 23 2 0 31 1 0 64 0 2 16 1 2 191 13 11 168 6 7 117 0 1 12 5 38 226 1 0 66 chain 2449 chr11 135086622 + 29104908 29104969 MER11A 1151 + 154 205 103915 24 15 7 14 2 0 6 chain 38709 chr11 135086622 + 29111749 29112212 L1PA7 6471 + 5682 6148 35557 245 0 2 207 0 1 11 chain 47723 chr11 135086622 + 29143254 29143769 L1HS 6032 + 5379 5894 30384 515 chain 73583 chr11 135086622 + 29155590 29156373 L1HS 6032 + 1658 2441 23196 783 chain 23105 chr11 135086622 + 29247776 29248041 L1PA2 6032 + 5767 6032 52201 265 chain 66816 chr11 135086622 + 29253191 29253935 L1PA3long 6157 + 5409 6157 24742 493 1 5 250 chain 2256 chr11 135086622 + 29267469 29267493 L1PA3long 6157 + 5799 5823 104991 24 chain 28107 chr11 135086622 + 29267493 29267827 L1PA3long 6157 + 5824 6157 44706 180 6 0 8 0 7 133 2 0 5 chain 55860 chr11 135086622 + 29288539 29289166 L1P1 4361 + 3579 4206 27602 104 0 1 466 1 0 56 chain 210307 chr11 135086622 + 29398532 29400920 L1PA4 6152 + 2954 5348 9345 982 0 1 303 0 1 424 1 0 153 1 2 484 0 4 40 chain 494342 chr11 135086622 + 29416125 29421628 L1PA3long 6157 + 2 6155 3301 5 3 0 87 0 526 156 0 128 2784 2 1 2466 chain 13550 chr11 135086622 + 29423987 29424153 Tigger3a 397 + 152 318 64252 166 chain 23193 chr11 135086622 + 29441627 29441987 THE1B 368 + 0 365 52090 61 6 9 99 1 0 32 0 1 5 9 13 10 1 0 10 1 0 66 1 0 4 17 18 37 chain 7694 chr11 135086622 + 29489138 29489248 THE1B 368 + 70 180 75641 48 4 5 46 1 0 11 chain 21592 chr11 135086622 + 29491231 29491666 MLT2A2 560 + 2 560 54372 141 81 89 63 9 118 16 29 0 8 6 41 82 chain 3148 chr11 135086622 + 29555328 29555365 MADE1 96 + 5 42 98376 37 chain 193272 chr11 135086622 + 29648045 29650172 L1PA3long 6157 + 4022 6150 9961 1801 1 2 325 chain 118043 chr11 135086622 + 29663262 29664690 L1PA6 6164 + 4717 6151 15848 162 12 6 158 0 1 252 0 4 18 0 4 508 0 3 318 chain 345708 chr11 135086622 + 29664690 29668801 L1PA6 6164 + 2039 6162 5972 286 6 0 215 0 3 250 0 4 382 17 11 50 0 4 22 0 4 214 0 1 22 0 4 966 0 1 34 0 4 402 0 1 396 2 0 80 0 1 656 1 0 110 chain 10524 chr11 135086622 + 29693653 29693832 MER57E1 380 + 39 223 69372 107 34 0 11 0 39 27 chain 88155 chr11 135086622 + 29704360 29705408 MER11C 1089 + 0 1073 20020 146 0 1 202 0 1 112 9 31 106 0 1 473 chain 15441 chr11 135086622 + 29713124 29713430 LTR12C 1709 + 932 1203 61733 139 0 47 40 108 26 19 chain 4100 chr11 135086622 + 29713431 29713549 LTR12C 1709 + 837 996 77910 38 38 79 42 chain 5730 chr11 135086622 + 29762169 29762237 MLT1C 463 + 348 416 82220 68 chain 141149 chr11 135086622 + 29787986 29789536 L1PA3long 6157 + 3710 5268 13017 532 0 8 1018 chain 456025 chr11 135086622 + 29794460 29799784 L1PA3long 6157 + 0 6157 4233 703 1 0 4 7 15 120 17 0 146 5 6 1470 0 1 1302 0 1 589 0 4 89 83 912 647 1 8 140 chain 56960 chr11 135086622 + 29833245 29834048 L1PA10 4194 + 3341 4151 27282 176 3 4 24 0 3 151 21 25 9 0 2 46 26 26 310 3 0 34 chain 69157 chr11 135086622 + 29869285 29870048 L1PA4 6152 + 5380 6150 24184 626 0 7 137 chain 30436 chr11 135086622 + 29904603 29904952 L1PA4 6152 + 5780 6143 41641 210 1 15 138 chain 23857 chr11 135086622 + 29909873 29910223 L1PA8 5853 + 5483 5853 51015 81 1 0 43 7 5 34 8 0 8 4 37 48 3 2 14 6 5 93 chain 97004 chr11 135086622 + 29951394 29953071 L1PA13 3608 + 117 1817 18656 18 13 10 18 1 0 12 4 5 21 114 104 26 11 10 75 1 0 12 1 0 8 10 8 17 6 2 18 1 0 17 8 6 12 2 0 15 18 17 27 0 5 51 6 4 87 23 21 97 1 4 66 5 7 128 0 2 33 0 2 61 4 40 8 1 0 35 2 0 5 0 2 33 0 4 180 16 15 14 17 20 318 chain 12501 chr11 135086622 + 29973621 29973782 LTR7Y 441 + 258 427 65983 7 1 0 37 0 6 15 0 1 19 0 2 82 chain 248505 chr11 135086622 + 29973796 29977330 HERVH-int 3825 + 0 3717 8280 202 0 2 77 0 2 33 29 28 20 15 16 77 3 64 9 1 0 11 0 209 30 2 0 7 3 8 50 0 3 60 326 4 208 0 1 15 1 0 643 0 1 173 0 4 183 0 4 105 0 1 76 0 3 408 1 0 132 0 2 73 0 2 146 1 4 24 8 218 36 0 1 332 4 0 10 chain 2702 chr11 135086622 + 30024521 30024629 Tigger4a 237 - 115 223 102345 22 65 65 21 chain 28918 chr11 135086622 + 30026591 30026899 AluYa5 310 + 0 307 43458 132 1 0 175 chain 5322 chr11 135086622 + 30041685 30041745 MER67D 511 + 76 136 84090 60 chain 6906 chr11 135086622 + 30068258 30068376 LTR54 533 + 412 533 77932 57 8 9 21 7 9 25 chain 92867 chr11 135086622 + 30102237 30103276 L1PA4 6152 + 4698 5737 19200 1039 chain 40443 chr11 135086622 + 30103704 30104218 L1PA7 6471 + 5951 6465 34352 122 2 4 238 3 0 5 1 2 143 chain 3142 chr11 135086622 + 30136225 30136282 MLT2C1 407 + 43 108 98458 32 11 19 14 chain 533979 chr11 135086622 + 30178430 30184609 L1PA4 6152 + 3 6152 1658 102 0 1 200 14 15 139 6 0 120 1 0 225 0 10 172 32 1 248 1 0 1311 0 1 1037 1 0 1715 0 1 845 4 0 6 chain 10517 chr11 135086622 + 30195725 30195854 MER85 139 + 0 139 69387 92 0 10 37 chain 3097 chr11 135086622 + 30240938 30240976 MLT1J1 437 + 394 432 98819 38 chain 37159 chr11 135086622 + 30242652 30243185 MLT2A2 560 + 0 537 36638 60 0 1 244 31 0 6 12 35 54 4 15 122 chain 41132 chr11 135086622 + 30252839 30253290 L1PA2 6032 + 5578 6030 33896 440 0 1 11 chain 4361 chr11 135086622 + 30440873 30441031 MER103C 291 + 3 188 89110 17 66 92 43 16 17 16 chain 24679 chr11 135086622 + 30493134 30493392 AluYd8 298 + 33 291 49764 258 chain 10641 chr11 135086622 + 30494884 30495052 MER2 342 + 164 336 69144 113 21 24 9 0 1 25 chain 40238 chr11 135086622 + 30639954 30640498 MER41A 554 + 0 554 34485 87 27 30 248 0 8 164 1 0 17 chain 103133 chr11 135086622 + 30642597 30644226 PABL_A-int 1935 + 195 1894 17938 93 0 1 38 9 0 12 1 0 63 22 11 7 0 2 118 4 3 5 1 0 48 24 22 23 1 0 193 0 3 51 1 0 186 1 0 13 13 11 35 7 12 28 5 3 139 2 0 159 33 153 100 1 0 95 22 5 10 5 4 14 2 1 14 15 9 8 1 0 7 chain 30474 chr11 135086622 + 30644920 30645341 MER41A 554 + 0 427 41603 87 5 6 116 11 13 172 13 16 17 chain 539368 chr11 135086622 + 30673605 30679948 L1PA4 6152 + 0 6152 1378 420 5 10 150 1 0 664 2 1 1068 0 1 69 0 1 43 8 5 566 199 6 194 0 1 1784 2 1 36 0 1 458 2 1 672 chain 307848 chr11 135086622 + 30688440 30692987 L1PA11 4918 + 8 4517 6665 8 0 3 11 1 0 12 2 0 36 10 7 30 0 2 11 2 0 52 1 0 33 2 0 5 2 1 351 0 1 282 143 430 165 0 1 75 2 0 23 8 0 26 0 8 11 9 21 149 1 4 47 0 1 13 4 6 143 0 4 267 1 0 11 303 9 74 30 2 138 3 4 260 10 12 132 1 0 777 1 0 154 0 3 488 13 4 21 5 1 56 2 1 80 2 0 13 2 1 20 4 0 9 chain 25966 chr11 135086622 + 30738471 30738752 L1PA2 6032 + 5500 5781 47768 281 chain 7813 chr11 135086622 + 30855086 30855180 MSTD 398 + 304 398 75334 94 chain 172033 chr11 135086622 + 30947942 30950012 L1PA7 6471 + 4399 6468 10997 50 2 1 4 1 0 988 0 1 177 43 42 658 0 1 147 chain 38175 chr11 135086622 + 30950012 30950631 L1MA4 2864 + 2032 2627 35727 86 1 0 72 62 46 98 3 0 85 16 7 62 13 18 121 chain 12162 chr11 135086622 + 30967384 30967513 L1HS 6032 + 4094 4223 66542 129 chain 6187 chr11 135086622 + 31033778 31033850 Tigger3b 1229 + 493 568 80403 57 0 3 15 chain 14016 chr11 135086622 + 31038037 31038213 L1PA5 6144 + 5947 6130 63570 34 4 9 64 0 2 74 chain 398938 chr11 135086622 + 31050572 31055957 L1PB1 5432 + 19 5391 5169 29 7 8 201 0 1 7 0 21 196 0 1 123 0 5 5 0 2 117 0 2 539 0 1 118 1 0 7 2 0 5 58 42 703 0 19 330 1 0 85 1 0 5 0 2 65 7 9 241 0 1 226 0 8 409 1 0 174 2 0 6 1 0 4 12 1 311 8 12 325 5 4 237 3 0 31 4 8 147 1 4 77 25 4 20 0 1 182 10 9 5 1 0 20 2 0 13 16 11 9 2 0 45 1 0 8 2 1 16 1 0 35 0 3 5 1 0 16 3 0 8 13 4 19 8 5 14 3 1 23 1 0 21 chain 4410 chr11 135086622 + 31120487 31120543 Arthur1C 363 + 219 275 88849 56 chain 54642 chr11 135086622 + 31149243 31149949 LTR12_ 688 + 0 688 27996 25 1 0 117 5 6 121 18 0 419 chain 29062 chr11 135086622 + 31168948 31169331 L1PA8A 6298 + 5895 6279 43242 295 28 29 60 chain 405082 chr11 135086622 + 31180403 31185419 L1PA7 6471 + 0 6470 5093 410 12 0 977 0 129 39 1 0 179 20 19 276 0 15 276 32 10 532 0 1 23 0 4 190 0 3 129 0 1311 146 0 8 143 12 3 368 1 0 394 0 16 21 0 2 35 0 2 48 0 1 186 1 9 565 chain 26168 chr11 135086622 + 31223865 31224225 THE1A 353 + 0 353 47476 4 0 1 21 0 1 25 9 6 23 9 4 26 1 0 242 chain 59989 chr11 135086622 + 31224261 31225147 L1PB2 3958 + 2969 3838 26378 229 0 9 12 9 5 83 2 0 54 1 0 13 5 0 65 2 0 13 5 0 88 1 0 37 19 21 19 1 0 53 3 1 10 2 1 30 2 1 40 2 0 22 1 0 63 chain 3736 chr11 135086622 + 31230236 31230281 L1MB2 1706 + 1642 1687 93349 45 chain 8983 chr11 135086622 + 31278312 31278463 L1MA8 2339 + 1933 2081 72592 15 23 21 40 1 0 72 chain 38488 chr11 135086622 + 31279427 31279888 L1PA7 6471 + 5995 6462 35718 136 1 0 42 0 7 282 chain 15611 chr11 135086622 + 31281575 31281934 THE1B 368 + 0 368 61518 15 2 0 32 0 1 13 5 22 8 14 0 20 5 6 60 91 97 94 chain 303886 chr11 135086622 + 31356256 31359583 L1PA3long 6157 + 2813 6146 6749 1690 0 1 806 0 4 81 0 1 750 chain 68701 chr11 135086622 + 31388918 31390035 L1MA3 4352 + 0 1111 24284 14 9 8 15 1 0 76 0 1 37 5 4 20 1 0 103 10 15 10 6 4 68 0 5 38 7 0 7 11 10 57 0 4 6 0 3 59 13 8 131 0 4 18 1 0 20 4 0 21 8 6 77 23 22 4 1 0 54 0 2 110 6 5 27 9 8 30 chain 9200 chr11 135086622 + 31393663 31393786 MLT1A1 405 + 284 405 72123 48 2 1 60 1 0 12 chain 75730 chr11 135086622 + 31400353 31401292 L1PA8 5853 + 4321 5261 22649 49 1 0 640 3 1 71 0 2 52 1 4 29 9 8 84 chain 5194 chr11 135086622 + 31435471 31435555 MADE1 96 + 0 96 84709 34 10 22 40 chain 17676 chr11 135086622 + 31470582 31470850 L1MA5 2750 + 2394 2661 59037 140 9 12 16 1 0 66 6 5 13 1 0 11 1 0 4 chain 550523 chr11 135086622 + 31544011 31550141 L1PA3long 6157 + 0 6157 704 1054 0 16 120 0 3 2977 0 1 101 0 1 1630 0 1 102 1 2 94 0 4 51 chain 484807 chr11 135086622 + 31574193 31579936 L1PA5 6144 + 387 6135 3537 125 0 1 109 0 1 186 17 0 9 0 17 139 0 2 194 9 0 1994 4 3 75 1 7 24 6 8 390 9 0 670 0 4 124 15 17 205 0 1 593 0 1 7 1 5 837 chain 51462 chr11 135086622 + 31696634 31697206 L1PA5 6144 + 1952 2525 29061 38 0 1 534 chain 18361 chr11 135086622 + 31704295 31704509 L1PA5 6144 + 5792 5999 58287 198 7 0 9 chain 12096 chr11 135086622 + 31704509 31704647 L1PA5 6144 + 6006 6144 66671 138 chain 115876 chr11 135086622 + 31735392 31736684 L1PA4 6152 + 4056 5348 16263 1292 chain 544271 chr11 135086622 + 31740753 31746893 L1PA4 6152 + 0 6146 1070 453 15 9 118 1 0 1084 8 4 718 0 4 683 0 1 57 1 6 554 0 2 5 0 1 1605 0 4 838 chain 58655 chr11 135086622 + 31908179 31908838 L1PA4 6152 + 3339 3999 26769 511 0 1 148 chain 193055 chr11 135086622 + 31908838 31910977 L1PA4 6152 + 4002 6142 9971 1570 1 2 568 chain 19831 chr11 135086622 + 31926886 31927256 THE1D 372 + 0 372 56636 43 12 0 94 77 84 17 2 8 45 0 2 43 2 1 35 chain 7225 chr11 135086622 + 31976905 31976993 L1PA8 5853 + 5765 5853 76870 88 chain 42044 chr11 135086622 + 32021218 32021676 L1PA3long 6157 + 5683 6142 33332 319 0 1 139 chain 17162 chr11 135086622 + 32042799 32042997 L1PA7 6471 + 6266 6464 59620 198 chain 29383 chr11 135086622 + 32080821 32081195 MLT2A2 560 + 176 560 42762 4 1 0 222 0 11 147 chain 3621 chr11 135086622 + 32112852 32112894 MADE1 96 + 54 96 94266 42 chain 20718 chr11 135086622 + 32132461 32132828 THE1B 368 + 0 368 55475 169 1 0 11 59 64 52 17 18 22 4 0 32 chain 13190 chr11 135086622 + 32239882 32240037 L1PA6 6164 + 6004 6160 64795 12 0 1 143 chain 188724 chr11 135086622 + 32283362 32286468 L1PA15 4387 + 1502 4355 10179 47 7 82 54 0 4 29 409 106 18 3 0 26 1 0 167 24 5 324 0 1 156 1 0 4 0 1 194 0 1 9 10 17 286 0 4 64 2 3 63 6 5 174 0 4 4 0 1 267 4 5 184 3 1 15 5 0 21 9 10 31 6 3 40 1 0 24 0 3 145 1 0 26 2 1 15 0 1 38 1 0 22 4 0 6 9 8 14 1 0 21 23 20 38 3 1 12 10 5 23 chain 27312 chr11 135086622 + 32299461 32299837 THE1C 375 + 0 375 45811 81 7 8 18 15 13 255 chain 9053 chr11 135086622 + 32473114 32473238 MER66C 541 + 410 535 72442 44 7 8 73 chain 139457 chr11 135086622 + 32620835 32622670 L1PA8 5853 + 4004 5853 13144 153 0 3 671 0 11 167 4 6 129 1 0 15 1 0 200 14 16 165 25 24 44 2 0 70 2 1 9 1 2 12 3 0 38 2 1 17 0 4 85 0 1 5 chain 208596 chr11 135086622 + 32625631 32627972 L1PA4 6152 + 3790 6143 9396 561 0 4 523 0 3 268 0 5 989 chain 62561 chr11 135086622 + 32693539 32694276 L1P1 4361 + 3606 4341 25740 169 0 1 372 1 0 157 1 0 23 2 1 12 chain 33644 chr11 135086622 + 32699489 32699870 L1PA5 6144 + 5743 6124 38968 68 1 0 140 0 1 172 chain 54481 chr11 135086622 + 32710817 32711728 L1PB1 5432 + 4412 5400 28056 22 0 1 145 0 1 10 6 83 151 12 13 260 21 19 17 1 0 10 1 0 14 5 1 10 2 0 9 0 1 4 11 38 14 5 4 42 1 0 13 69 52 22 3 2 22 1 0 8 chain 508904 chr11 135086622 + 32730794 32736939 L1PA5 6144 + 0 5912 2809 657 0 7 13 1 4 267 0 4 217 9 0 1995 1 0 6 1 0 79 0 1 4 1 0 187 0 1 174 248 0 730 0 4 120 22 29 1413 chain 17908 chr11 135086622 + 32743288 32743541 L1P1 4361 + 2749 2991 58748 86 23 6 10 0 6 134 chain 478579 chr11 135086622 + 32762638 32768166 L1PA5 6144 + 5 5828 3664 130 17 31 253 13 14 289 0 2 150 19 0 360 0 1 1312 1 0 214 0 2 350 11 318 853 11 0 6 1 0 1538 chain 33892 chr11 135086622 + 32781875 32782373 MER1A 529 + 37 529 38792 20 13 9 14 11 8 61 0 2 270 2 1 31 2 0 5 12 13 44 0 1 13 chain 7051 chr11 135086622 + 32818518 32818882 L1MB7 1623 + 1303 1607 77429 14 9 8 12 21 17 9 3 1 11 1 0 47 1 0 6 122 90 12 48 30 37 1 0 10 chain 116439 chr11 135086622 + 32866127 32867870 L1PREC2 3366 + 1383 3075 16147 785 21 20 167 4 0 93 2 1 142 0 1 119 1 0 41 2 0 54 2 1 43 1 0 4 3 0 13 70 55 30 3 0 11 63 47 41 3 1 7 1 0 4 1 0 12 chain 17189 chr11 135086622 + 32884081 32884296 MER57B1 401 + 0 217 59583 111 0 1 96 0 1 8 chain 3404 chr11 135086622 + 32901134 32901179 MIR 256 + 89 136 96029 34 0 2 11 chain 12187 chr11 135086622 + 32911241 32911399 L1PA8A 6298 + 6136 6291 66493 47 2 0 24 1 0 84 chain 32836 chr11 135086622 + 33012945 33013310 L1PA5 6144 + 5446 5811 39639 365 chain 29297 chr11 135086622 + 33013311 33013642 L1PA5 6144 + 5811 6142 42899 331 chain 24736 chr11 135086622 + 33020976 33021276 AluSc5 308 + 10 306 49673 116 4 0 180 chain 25878 chr11 135086622 + 33178521 33178854 THE1C 375 + 0 339 47900 22 0 5 158 1 2 152 chain 4040 chr11 135086622 + 33239161 33239226 Kanga1c 672 + 579 641 91152 5 1 0 28 2 0 29 chain 135437 chr11 135086622 + 33243047 33244593 SVA_B 1603 + 0 1602 13494 20 11 0 22 8 1 703 0 40 135 4 0 29 0 40 601 2 0 11 chain 3570 chr11 135086622 + 33299151 33299191 Tigger1 2417 + 1798 1838 94665 40 chain 3098 chr11 135086622 + 33318459 33318493 MIR 256 + 66 100 98799 34 chain 5218 chr11 135086622 + 33323543 33323601 L1MB8 1703 + 1527 1585 84591 58 chain 115924 chr11 135086622 + 33432622 33434045 L1PA8A 6298 + 4868 6290 16252 477 0 3 30 8 0 65 0 8 24 19 0 14 1 7 71 0 2 84 0 3 349 0 1 172 2 0 5 3 4 73 0 4 26 chain 112449 chr11 135086622 + 33465651 33467126 L1PA6 6164 + 4811 6162 16759 325 0 1 7 140 12 156 0 4 655 6 5 186 chain 9219 chr11 135086622 + 33486235 33486354 L1MA8 2339 + 1643 1801 72082 17 0 39 102 chain 75007 chr11 135086622 + 33527253 33528960 L1PB1 5432 + 4127 5422 22841 58 1 10 7 3 0 3 7 0 94 0 1 35 0 5 73 8 9 82 22 27 68 7 8 21 9 6 50 401 5 14 0 1 35 0 1 297 13 14 47 22 16 24 1 0 6 1 0 12 2 0 3 2 0 9 4 2 45 6 9 13 6 5 37 2 1 16 3 0 6 18 9 15 3 1 5 1 0 13 1 0 3 1 0 8 0 6 8 1 0 20 8 7 7 1 0 14 1 0 4 chain 73540 chr11 135086622 + 33589057 33589912 L1PA4 6152 + 5283 6146 23209 21 0 4 323 1 0 146 0 1 223 0 1 24 1 0 70 10 14 36 chain 19144 chr11 135086622 + 33604301 33604586 L1PB2 3958 + 3554 3838 57403 64 1 0 61 1 0 11 4 0 37 0 1 13 1 0 12 4 2 20 1 0 44 0 8 11 chain 4460 chr11 135086622 + 33711074 33711128 L1MB7 1623 + 873 927 88552 54 chain 318422 chr11 135086622 + 33725843 33729678 L1PA7 6471 + 2615 6468 6433 24 0 2 31 0 2 223 1 2 303 0 3 277 3 4 4 1 0 59 4 8 447 4 6 485 9 10 17 0 2 1068 1 6 325 0 10 191 19 8 189 0 1 136 4 0 10 chain 26697 chr11 135086622 + 33788272 33788643 L1PA8 5853 + 5485 5853 46688 77 1 0 17 0 4 25 2 0 71 1 0 61 2 1 19 1 0 20 1 0 73 chain 10792 chr11 135086622 + 33795724 33795849 L1MA2 4263 + 3207 3332 68874 125 chain 93446 chr11 135086622 + 33832167 33833490 HSMAR1 1287 + 0 1284 19122 65 59 6 65 0 17 392 31 28 164 1 0 210 9 5 159 12 15 31 0 2 125 chain 24609 chr11 135086622 + 33889664 33890103 L1PB4 2604 + 2101 2547 49852 62 0 1 4 1 0 96 0 9 90 13 12 9 2 0 44 80 81 38 chain 25884 chr11 135086622 + 33917362 33917719 THE1B 368 + 0 368 47890 26 0 1 62 0 1 79 1 0 29 35 45 125 chain 19723 chr11 135086622 + 33921841 33922078 L1PA7 6471 + 6232 6468 56757 200 0 1 25 2 0 10 chain 125821 chr11 135086622 + 33985582 33987019 SVA_D 2077 + 63 2075 14583 475 11 69 60 0 37 212 1 490 32 1 0 21 2 0 607 6 0 9 chain 140814 chr11 135086622 + 33989916 33991575 LTR12C 1709 + 0 1709 13037 525 0 1 286 0 40 259 1 0 6 2 0 107 0 4 112 0 8 361 chain 11920 chr11 135086622 + 34033307 34033463 MLT2B1 522 + 1 157 66969 120 0 1 18 2 1 16 chain 3795 chr11 135086622 + 34278344 34278461 MER103C 291 + 122 237 92888 39 57 55 21 chain 5689 chr11 135086622 + 34341488 34341557 MER3 215 + 12 81 82391 69 chain 155619 chr11 135086622 + 34367887 34369884 L1PB1 5432 + 2904 4928 12031 22 0 1 33 0 4 353 22 27 186 0 4 63 0 1 297 0 1 4 0 1 312 1 0 262 0 4 48 0 4 61 4 0 33 4 1 79 0 2 81 6 14 126 chain 19109 chr11 135086622 + 34373349 34373642 AluSz6 309 + 0 289 57437 57 1 0 45 18 19 11 14 11 106 1 0 40 chain 16501 chr11 135086622 + 34376551 34376765 Tigger1 2417 + 1041 1261 60372 22 2 10 111 2 0 77 chain 4656 chr11 135086622 + 34531372 34531593 L1MB3 1562 + 1276 1455 87495 50 147 107 5 2 0 17 chain 10015 chr11 135086622 + 34698707 34698960 L1PB1 5432 + 5196 5430 70394 24 18 16 20 6 12 11 2 1 16 1 0 4 2 0 11 9 0 15 12 9 11 2 0 24 1 0 23 1 0 11 1 0 11 1 0 11 1 0 4 chain 6955 chr11 135086622 + 34725530 34725646 MLT1D 503 + 0 115 77755 18 0 2 7 21 18 70 chain 331430 chr11 135086622 + 34737530 34741613 L1P3 4156 + 3 4136 6193 248 2 1 67 6 5 77 8 0 266 4 0 8 14 6 291 4 47 20 4 14 104 0 2 898 0 18 553 1 2 7 0 1 70 1 2 790 1 0 607 2 0 7 2 1 21 chain 17421 chr11 135086622 + 34749678 34749927 Tigger3a 397 + 27 325 59327 48 21 70 180 chain 104836 chr11 135086622 + 34796963 34798353 THE1C-int 1605 + 181 1596 17708 120 0 1 124 0 1 18 10 17 106 29 22 425 9 24 279 0 7 52 0 1 218 chain 24867 chr11 135086622 + 34802455 34802910 L1PB 1623 + 1151 1573 49497 152 3 4 139 1 0 7 2 1 26 12 8 13 5 1 13 1 0 9 52 29 20 chain 3065 chr11 135086622 + 34850274 34850306 LTR16A1 462 + 424 456 99146 32 chain 25920 chr11 135086622 + 34865942 34866332 MER1A 529 + 135 529 47832 181 6 8 133 43 45 27 chain 56125 chr11 135086622 + 34896062 34896724 L1PA7 6471 + 5772 6461 27525 188 0 24 20 0 4 444 1 0 9 chain 29093 chr11 135086622 + 34912451 34912884 MLT2A1 477 + 0 477 43197 91 1 0 7 1 0 71 4 1 8 1 2 25 0 1 11 0 8 33 13 14 113 4 0 10 3 45 28 0 1 4 1 0 4 chain 130515 chr11 135086622 + 34952033 34953479 L1PA3long 6157 + 3335 4783 13977 123 0 2 1323 chain 155560 chr11 135086622 + 34982328 34984096 L1PA4 6152 + 3044 4811 12036 165 1 0 1602 chain 474868 chr11 135086622 + 35021982 35028532 L1PA7 6471 + 5 6468 3749 140 61 66 75 0 2 27 0 1 4 42 238 119 49 59 57 0 75 175 5 26 220 16 20 236 1 0 484 1 0 259 0 1 320 12 8 21 5 8 1366 0 2 142 2 1 665 389 8 20 0 1 227 22 0 382 0 7 131 2 1 20 3 2 686 0 1 153 4 0 7 chain 28074 chr11 135086622 + 35047925 35048267 THE1A 353 + 0 342 44762 110 1 0 8 0 1 223 chain 120463 chr11 135086622 + 35048278 35049847 THE1A-int 1579 + 0 1579 15449 266 1 0 4 0 3 29 0 1 170 9 14 7 5 0 8 0 1 77 0 1 61 0 1 75 1 0 35 13 14 218 4 5 13 0 2 29 0 1 544 chain 27706 chr11 135086622 + 35049847 35050190 THE1A 353 + 0 342 45306 110 2 1 231 chain 93358 chr11 135086622 + 35053688 35054726 L1P1 4361 + 3292 4328 19138 858 1 0 155 1 0 23 chain 40867 chr11 135086622 + 35081174 35081634 L1PA5 6144 + 5683 6144 34048 127 0 1 333 chain 488055 chr11 135086622 + 35091075 35096771 L1PA6 6164 + 435 6152 3467 30 1 0 82 17 0 7 0 1 1550 0 1 126 0 14 44 0 1 583 0 9 306 0 1 265 0 3 487 2 0 60 0 3 106 5 7 57 4 5 609 0 1 360 0 1 671 1 2 148 0 1 34 0 1 141 chain 11632 chr11 135086622 + 35096818 35097013 MLT1A0 366 + 147 344 67510 15 14 17 19 19 18 128 chain 26461 chr11 135086622 + 35108384 35108717 THE1C 375 + 0 335 47038 44 0 1 77 3 0 81 0 3 67 0 1 61 chain 33690 chr11 135086622 + 35124815 35125306 L1PA8 5853 + 5368 5853 38934 196 1 0 44 2 0 62 20 18 52 2 1 10 10 10 92 chain 3033 chr11 135086622 + 35273065 35273140 MADE2 80 - 0 75 99472 26 28 28 21 chain 76493 chr11 135086622 + 35396772 35397597 L1PA2 6032 + 4111 4936 22436 825 chain 25102 chr11 135086622 + 35408294 35408605 THE1A 353 + 0 310 49115 198 1 0 112 chain 25629 chr11 135086622 + 35429955 35430233 L1PA2 6032 + 5741 6019 48271 278 chain 24434 chr11 135086622 + 35476284 35476608 THE1C 375 + 6 336 50122 33 0 4 133 0 1 6 10 11 142 chain 3452 chr11 135086622 + 35479414 35479453 MIRb 242 + 165 204 95630 39 chain 101209 chr11 135086622 + 35578294 35579399 L1PA3long 6157 + 5051 6157 18162 963 0 1 142 chain 78458 chr11 135086622 + 35699260 35700143 L1PA4 6152 + 3796 4683 21992 560 0 4 323 chain 553069 chr11 135086622 + 35702778 35708921 L1PA3long 6157 + 10 6157 542 396 0 1 4 1 0 205 2 0 431 0 2 539 1 0 1534 0 1 1585 0 1 339 0 3 254 1 5 168 1 0 104 4 0 241 0 1 333 chain 20853 chr11 135086622 + 35739876 35740119 AluSc5 308 + 58 301 55304 243 chain 3580 chr11 135086622 + 35834478 35834527 L2a 937 + 267 315 94583 4 1 0 44 chain 43294 chr11 135086622 + 35864538 35865029 L1PA5 6144 + 5640 6130 32578 391 1 0 99 chain 21940 chr11 135086622 + 35896155 35896559 MSTA 426 + 8 426 53918 82 0 1 41 37 38 35 1 0 5 49 55 35 0 5 8 2 5 97 1 0 11 chain 19751 chr11 135086622 + 35936262 35936689 L1PB1 5432 + 5031 5427 56729 72 1 2 9 3 0 24 1 0 6 1 0 14 5 1 9 5 4 5 0 1 39 7 6 13 1 0 43 4 3 14 2 0 6 16 6 19 8 5 14 2 0 24 1 0 14 6 7 13 1 0 14 1 0 5 1 0 4 chain 22640 chr11 135086622 + 35985545 35985915 THE1B 368 + 2 368 52926 143 3 0 24 1 0 4 19 21 6 0 5 4 1 0 4 0 1 16 1 0 12 2 1 55 19 14 56 chain 3875 chr11 135086622 + 36028850 36028911 MIR 256 + 70 137 92315 29 8 14 24 chain 10616 chr11 135086622 + 36045560 36045726 THE1B 368 + 0 168 69197 15 2 0 32 18 23 94 1 0 4 chain 5473 chr11 135086622 + 36051391 36051457 MIR 256 + 70 136 83338 66 chain 28679 chr11 135086622 + 36062532 36062876 THE1C 375 + 0 349 43835 66 0 2 136 1 4 141 chain 4258 chr11 135086622 + 36136990 36137048 MSTA 426 + 354 414 89768 10 1 3 47 chain 172063 chr11 135086622 + 36143901 36146021 SVA_D 2077 + 2 2077 10994 36 0 5 499 0 40 142 0 3 31 8 5 148 0 36 69 0 52 320 173 0 13 4 0 666 1 0 10 chain 3552 chr11 135086622 + 36145154 36145219 SVA_D 2077 + 985 1052 56940 51 0 2 14 chain 4154 chr11 135086622 + 36145254 36145327 SVA_D 2077 + 1213 1286 38775 73 chain 2829 chr11 135086622 + 36152848 36152910 MER68 562 + 490 553 101410 25 19 20 18 chain 3924 chr11 135086622 + 36166965 36167015 MLT1C 463 + 65 117 91954 22 0 2 28 chain 19547 chr11 135086622 + 36387182 36387426 L1PA5 6144 + 5898 6143 56959 88 3 1 6 1 0 5 0 4 141 chain 24900 chr11 135086622 + 36418521 36418802 AluY 311 + 7 289 49430 125 0 1 156 chain 78793 chr11 135086622 + 36482360 36483214 L1PA2 6032 + 4395 5254 21921 636 0 5 218 chain 124011 chr11 135086622 + 36521583 36523161 THE1B-int 1605 + 0 1605 14849 24 0 1 405 1 26 63 1 0 253 0 1 4 1 0 131 2 1 256 7 9 280 1 2 149 chain 140343 chr11 135086622 + 36528011 36529737 L1PA6 6164 + 2514 4246 13073 49 0 1 33 10 13 464 3 0 110 0 1 6 1 0 22 5 4 23 0 4 209 0 1 58 0 1 10 0 1 272 1 0 450 chain 45540 chr11 135086622 + 36541533 36542143 LTR71B 605 + 0 605 31289 125 23 22 5 3 0 25 0 2 59 1 0 116 2 0 251 chain 261414 chr11 135086622 + 36547118 36550276 L1PA7 6471 + 3297 6468 7929 187 10 13 155 0 1 590 0 1 314 4 7 9 0 1 46 1 0 998 1 0 79 0 8 18 0 1 110 0 1 141 1 0 233 3 4 80 29 30 128 1 0 9 4 0 7 chain 257396 chr11 135086622 + 36642088 36644993 L1PA5 6144 + 3212 6128 8047 1056 0 7 66 0 4 117 1 0 160 0 1 1261 2 1 116 0 1 126 chain 137059 chr11 135086622 + 36670001 36672753 HUERS-P3b-int 2065 + 15 2030 13337 79 4 0 130 1 2 36 1 2 31 4 0 21 75 0 239 8 11 12 3 0 3 309 0 47 10 11 135 1 0 54 1 0 27 1 0 220 0 1 86 24 25 31 0 1 97 5 38 24 7 12 55 27 26 44 25 2 37 20 0 47 2 0 13 1 0 25 1 0 89 3 1 73 3 0 8 17 15 59 5 0 57 324 0 52 2 0 37 chain 523481 chr11 135086622 + 36673422 36680076 L1PA5 6144 + 0 6143 2113 120 0 14 390 3 2 211 1 0 128 0 10 193 7 3 94 13 4 1378 1 0 415 330 0 323 1 0 504 0 1 391 205 15 1775 1 2 170 chain 17897 chr11 135086622 + 36677925 36678121 L1PA5 6144 - 2718 2914 58578 196 chain 254889 chr11 135086622 + 36731160 36735527 L1PBa 3878 + 33 3711 8115 6 1 0 8 3 0 13 3 0 3 1 0 8 14 10 4 1 0 5 2 0 10 2 1 44 1 0 12 10 6 46 8 7 12 8 6 40 4 5 239 5 4 137 0 1 6 1 0 48 32 33 16 2 0 63 1 0 102 44 43 16 0 2 17 0 1 43 10 11 129 6 17 109 2 0 149 5 9 136 10 11 189 0 5 270 0 3 61 317 0 210 0 6 5 395 0 16 0 1 300 7 1 20 0 1 22 7 8 61 0 3 169 6 24 52 1 2 95 0 4 71 3 0 198 5 7 193 4 0 93 chain 14801 chr11 135086622 + 36760843 36761046 MSTA 426 + 0 202 62530 131 9 8 63 chain 30308 chr11 135086622 + 36847917 36848275 L1PA7 6471 + 6090 6466 41751 41 0 1 50 0 17 267 chain 29777 chr11 135086622 + 36875317 36875637 AluYb8 318 + 0 318 42265 132 2 0 186 chain 77961 chr11 135086622 + 36893939 36894780 L1HS 6032 + 4836 5677 22107 841 chain 15436 chr11 135086622 + 36968198 36968364 L1PA2 6032 + 5862 6028 61741 166 chain 3894 chr11 135086622 + 36987425 36987477 L1MA5 2750 + 2575 2631 92180 6 0 4 46 chain 25888 chr11 135086622 + 37003776 37004048 AluYa5 310 + 38 310 47885 272 chain 5188 chr11 135086622 + 37016243 37016445 L1MB1 2102 + 1799 2000 84736 33 72 68 28 42 45 27 chain 56614 chr11 135086622 + 37032531 37033211 L1PA7 6471 + 3149 3832 27383 113 1 2 37 0 1 201 0 1 328 chain 2928 chr11 135086622 + 37116323 37116378 MADE1 96 - 0 96 100608 12 0 41 43 chain 79036 chr11 135086622 + 37135431 37136317 MER11D 897 + 0 897 21858 275 0 11 611 chain 72777 chr11 135086622 + 37148218 37149036 L1PA4 6152 + 4535 5355 23364 155 0 1 601 0 1 62 chain 4286 chr11 135086622 + 37247157 37247205 MLT2D 439 + 391 439 89596 48 chain 5685 chr11 135086622 + 37298486 37298610 Tigger2b_Pri 1066 + 250 370 82412 26 41 37 57 chain 5860 chr11 135086622 + 37308136 37308211 MER77B 728 + 308 382 81655 61 1 0 13 chain 25488 chr11 135086622 + 37335397 37335768 THE1C 375 + 0 373 48501 167 29 28 30 1 5 120 1 0 23 chain 116534 chr11 135086622 + 37349306 37350843 HERVL-int 5654 + 723 3533 16128 147 0 1 238 0 1 4 1 0 10 7 6 105 22 9 124 0 1 201 0 1 31 4 8 45 10 0 92 1 1290 140 0 1 355 chain 469705 chr11 135086622 + 37356278 37362223 L1PA7 6471 + 4 6229 3864 305 0 1 101 5 6 406 0 5 160 5 6 98 1 0 132 4 11 33 5 4 751 0 5 132 0 4 101 1 0 78 2 1 175 0 2 111 16 0 40 1 0 209 0 264 122 0 1 216 1 2 5 1 0 26 0 6 486 2 0 55 1 0 178 0 1 34 0 2 399 0 2 275 2 1 26 13 12 479 3 4 149 0 3 600 chain 20098 chr11 135086622 + 37366564 37366857 L1PA8 5853 + 5562 5849 56259 46 2 0 74 1 0 6 17 16 36 2 1 12 8 7 89 chain 5280 chr11 135086622 + 37370327 37370415 L1PB3 3668 + 3482 3566 84283 13 1 0 8 2 1 24 3 1 37 chain 20213 chr11 135086622 + 37408041 37408285 L1PA7 6471 + 5847 6106 56125 182 0 15 62 chain 29783 chr11 135086622 + 37408285 37408634 L1PA7 6471 + 6111 6461 42254 204 0 1 145 chain 17464 chr11 135086622 + 37438437 37438726 L1PA8 5853 + 5566 5850 59280 41 3 1 30 1 2 25 6 8 6 3 0 9 1 0 52 2 1 19 2 1 89 chain 26288 chr11 135086622 + 37485030 37485364 THE1A 353 + 0 333 47289 111 1 0 222 chain 78029 chr11 135086622 + 37493522 37494364 L1PA2 6032 + 4019 4860 22092 254 1 0 587 chain 73709 chr11 135086622 + 37587731 37588863 MER11A 1151 + 0 1143 23164 55 1 100 23 8 0 52 1 0 64 4 0 32 0 2 115 0 1 20 0 1 73 0 1 86 6 8 50 5 7 145 25 1 26 44 1 20 18 0 13 4 3 21 0 1 60 6 7 155 chain 27048 chr11 135086622 + 37645096 37645378 AluYb8 318 + 36 318 46202 282 chain 72652 chr11 135086622 + 37659096 37659897 L1PA3long 6157 + 5353 6155 23386 654 0 1 147 chain 22188 chr11 135086622 + 37774202 37774556 LTR7B 505 + 0 441 53585 108 0 10 22 0 3 28 20 86 34 38 5 15 0 41 89 chain 17425 chr11 135086622 + 37782034 37782330 L1PA11 4918 + 6 290 59323 9 2 0 27 2 0 29 8 6 47 12 10 46 1 0 28 14 11 71 chain 167197 chr11 135086622 + 37832579 37834402 L1PA3long 6157 + 4329 6152 11258 1823 chain 3220 chr11 135086622 + 37841531 37841565 MER51A 677 + 196 230 97730 34 chain 42523 chr11 135086622 + 37850557 37851057 MER9a1 513 + 0 513 33051 42 0 12 250 0 1 208 chain 78139 chr11 135086622 + 37858937 37859901 LTR5_Hs 974 + 0 974 22063 6 0 5 448 0 4 193 1 2 316 chain 88427 chr11 135086622 + 37930571 37931589 LTR5A 1029 + 0 1029 19957 13 0 4 47 0 2 83 1 0 730 0 6 144 chain 46270 chr11 135086622 + 38004249 38004843 LTR12_ 688 + 111 688 30935 27 18 2 26 1 0 522 chain 8034 chr11 135086622 + 38077343 38077571 L1MA8 2339 + 1996 2189 74792 13 1 0 91 2 0 5 100 68 16 chain 28384 chr11 135086622 + 38078053 38078364 AluYa5 310 + 0 310 44297 132 2 1 177 chain 50528 chr11 135086622 + 38111066 38111960 LTR12 884 + 0 869 29372 139 0 108 27 6 48 13 2 3 40 2 0 246 61 31 69 153 9 136 chain 52440 chr11 135086622 + 38116662 38117548 LTR12_ 688 + 0 688 28744 183 23 0 245 37 4 7 0 3 86 154 9 151 chain 138970 chr11 135086622 + 38132913 38134748 L1PA8 5853 + 4009 5843 13190 117 0 1 316 1 0 137 5 6 40 1 3 4 0 1 88 17 18 266 6 8 119 1 0 83 0 1 347 1 0 44 1 0 71 1 0 14 2 0 42 7 6 4 1 0 15 1 0 52 12 12 19 chain 3671 chr11 135086622 + 38158433 38158482 MLT1B 390 + 318 365 93810 5 2 0 42 chain 551703 chr11 135086622 + 38191742 38197885 L1PA3long 6157 + 0 6157 622 570 1 0 1250 3 0 572 0 4 30 0 1 81 0 1 582 0 1 905 0 5 1308 0 4 366 0 3 351 1 0 123 chain 12519 chr11 135086622 + 38203379 38203524 L1PA6 6164 + 6015 6162 65951 91 0 2 54 chain 60487 chr11 135086622 + 38204474 38205246 L1PA8A 6298 + 5368 6147 26237 49 0 1 74 0 6 649 chain 13353 chr11 135086622 + 38205518 38205677 L1PA6 6164 + 6003 6162 64537 159 chain 46754 chr11 135086622 + 38232079 38232612 L1PA3long 6157 + 3821 4355 30747 203 5 6 325 chain 162554 chr11 135086622 + 38232613 38234407 L1PA3long 6157 + 4357 6157 11575 1140 0 6 654 chain 69532 chr11 135086622 + 38234454 38235633 L1PA7 6471 + 5606 6469 24113 14 2 1 185 1 4 32 3 4 283 323 8 61 1 0 263 3 0 8 chain 32304 chr11 135086622 + 38334378 38334863 L1PBa 3878 + 1839 2278 40111 98 1 0 9 48 0 186 6 9 137 chain 3603 chr11 135086622 + 38360419 38360502 MLT1B 390 + 24 115 94398 21 1 0 5 16 26 34 1 0 5 chain 33674 chr11 135086622 + 38397811 38398381 THE1B-int 1605 + 0 503 38954 12 5 6 71 63 7 11 1 4 194 0 1 124 38 22 51 chain 37102 chr11 135086622 + 38420161 38420575 L1PA2 6032 + 5618 6031 36676 269 1 0 144 chain 14577 chr11 135086622 + 38430691 38430859 MLT2A2 560 + 0 168 62820 168 chain 84658 chr11 135086622 + 38471331 38472498 L1PA8 5853 + 4677 5853 20692 328 3 9 73 0 1 138 2 1 222 0 10 56 1 0 46 1 0 47 2 0 70 65 63 19 3 2 91 chain 3389 chr11 135086622 + 38474248 38474290 MER58A 224 + 174 216 96197 42 chain 15176 chr11 135086622 + 38515165 38515385 L1PA8 5853 + 5647 5853 62065 32 1 0 14 1 0 47 2 1 105 11 0 7 chain 3742 chr11 135086622 + 38573141 38573194 MADE1 96 - 27 96 93314 12 1 17 40 chain 39908 chr11 135086622 + 38601588 38602328 LTR17 781 + 0 757 34730 56 1 0 100 1 0 16 26 21 40 1 0 16 7 6 72 1 0 45 131 135 188 20 43 19 chain 175609 chr11 135086622 + 38603914 38606141 HERV17-int 4347 + 12 4338 10798 15 1 0 49 3 2 35 2 0 18 13 12 184 0 430 109 1 0 153 17 1 333 0 1 125 6 0 133 9 28 6 1 0 17 0 1 123 0 6 267 0 1672 27 1 0 146 0 1 332 1 0 100 chain 332335 chr11 135086622 + 38627833 38632095 HERVL-int 5654 + 1 4188 6179 55 4 5 8 1 0 219 0 1 155 8 0 857 6 18 137 11 0 388 8 6 116 0 3 432 10 12 122 0 1 142 3 4 843 76 0 43 0 2 618 chain 2849 chr11 135086622 + 38631381 38631418 HERVL-int 5654 + 3549 3587 101245 12 0 1 25 chain 7721 chr11 135086622 + 38711910 38712021 L1PA8 5853 + 5742 5853 75557 18 2 1 69 0 1 22 chain 46446 chr11 135086622 + 38738861 38739367 L1PA3long 6157 + 5649 6156 30865 500 0 1 6 chain 74387 chr11 135086622 + 38784969 38785851 MER11D 897 + 2 897 22988 239 0 12 20 21 20 283 0 1 103 0 1 216 chain 32761 chr11 135086622 + 38789842 38790230 L1PA4 6152 + 5761 6151 39705 237 4 7 86 1 0 60 chain 192595 chr11 135086622 + 38811186 38813483 L1P1 4361 + 4 2283 9992 570 1 0 246 27 10 1453 chain 105389 chr11 135086622 + 38813484 38814657 L1PA3long 6157 + 4973 6155 17629 100 0 6 90 0 1 527 0 2 456 chain 32701 chr11 135086622 + 38897945 38898369 MSTA 426 + 0 426 39761 103 0 1 99 3 5 37 1 0 181 chain 234241 chr11 135086622 + 38906746 38909684 L1PA7 6471 + 3406 6373 8632 117 8 0 14 7 11 71 0 19 420 0 1 260 5 8 345 0 4 273 1 0 28 0 1 643 1 0 45 0 1 6 1 0 186 0 3 193 3 4 214 0 1 31 9 11 57 chain 111993 chr11 135086622 + 39000787 39002009 L1PA3long 6157 + 3822 5045 16817 122 0 1 1100 chain 236538 chr11 135086622 + 39032080 39034701 L1PA3long 6157 + 3526 6153 8556 2608 0 6 13 chain 149778 chr11 135086622 + 39070989 39073753 L1PB1 5432 + 3330 5413 12364 38 0 1 40 9 1 76 1 0 4 0 11 134 0 1 92 2 4 237 0 1 22 9 6 458 327 0 165 4 0 82 4 5 222 2 1 172 1 2 10 3 0 23 1 0 9 347 20 53 2 1 16 1 0 44 1 0 15 3 0 7 16 6 15 11 8 14 3 1 23 1 0 21 1 0 13 1 0 9 chain 6625 chr11 135086622 + 39079063 39079536 LTR12D 1347 + 436 1160 78885 66 372 623 35 chain 87283 chr11 135086622 + 39111014 39112294 HSMAR1 1287 + 9 1287 20175 17 0 1 50 0 4 44 25 0 16 0 2 421 0 3 32 3 0 10 14 17 179 16 29 71 1 4 14 6 8 70 6 0 109 22 21 120 5 7 29 chain 386016 chr11 135086622 + 39125931 39131118 HERVL-int 5654 + 809 5654 5384 100 0 1 43 1 0 129 0 1 41 6 5 156 3 0 188 58 34 49 0 1 5 0 1 77 0 11 247 0 1 306 0 2 635 1 10 62 8 0 131 0 1 5 1 0 126 0 1 362 2 10 313 0 1 51 326 0 136 2 3 210 14 0 23 0 4 10 0 7 904 18 0 203 0 4 235 chain 344968 chr11 135086622 + 39232406 39236923 L1PA8 5853 + 50 5849 5985 22 2 0 10 1 0 6 47 24 190 7 11 191 0 2 136 17 17 113 8 11 550 0 1 760 0 2 38 0 3 324 1 11 9 0 3 398 0 1 51 4 8 263 6 1275 28 18 18 35 0 1 151 0 7 14 0 2 269 5 4 75 3 6 113 0 1 357 1 0 47 2 0 69 25 23 40 2 1 19 1 0 89 chain 28508 chr11 135086622 + 39257066 39257751 THE1B-int 1605 + 1226 1600 44118 84 319 0 5 1 0 28 0 1 194 0 8 54 chain 18960 chr11 135086622 + 39257756 39258093 THE1B 368 + 0 356 57586 44 8 23 105 1 0 24 45 57 15 14 6 47 0 1 34 chain 68692 chr11 135086622 + 39270886 39271874 LTR12 884 + 0 869 24287 24 1 0 335 36 17 78 12 14 172 105 4 225 chain 6902 chr11 135086622 + 39271556 39271639 LTR12 884 + 550 633 77943 83 chain 33797 chr11 135086622 + 39311174 39311639 L1P2 5180 + 2048 2497 38849 232 0 2 5 1 0 40 34 17 153 chain 143010 chr11 135086622 + 39311644 39313355 LTR12C 1709 + 0 1709 12860 104 5 4 195 6 7 4 1 0 62 4 0 58 0 1 402 1 0 75 0 2 197 1 0 5 3 1 107 0 4 481 chain 101786 chr11 135086622 + 39329965 39331126 L1PA5 6144 + 3687 4849 18086 496 0 1 665 chain 11805 chr11 135086622 + 39337716 39337869 MER50 708 + 454 606 67196 31 1 0 121 chain 122601 chr11 135086622 + 39430612 39432091 L1PA7 6471 + 4979 6470 15096 294 1 2 324 0 4 22 0 5 377 10 12 117 0 1 87 6 5 241 chain 85531 chr11 135086622 + 39493301 39494401 MER11A 1151 + 0 1151 20532 79 21 31 184 0 11 21 0 2 60 0 1 28 4 0 132 11 10 297 9 6 6 0 35 91 0 1 90 1 0 66 chain 137263 chr11 135086622 + 39520437 39522136 L1PA7 6471 + 4768 6468 13320 382 3 0 5 0 3 94 5 6 259 3 2 102 1 4 125 0 1 564 2 0 78 0 2 64 3 0 9 chain 22239 chr11 135086622 + 39547593 39547982 THE1D-int 1627 + 12 345 53495 24 7 6 139 7 3 108 70 19 34 chain 3680 chr11 135086622 + 39547894 39547934 THE1D-int 1627 + 256 296 93747 40 chain 70210 chr11 135086622 + 39560213 39561248 LTR12 884 + 0 884 23948 25 1 0 284 5 1 43 43 2 22 2 0 349 103 0 158 chain 3297 chr11 135086622 + 39560571 39560614 LTR12 884 + 287 330 69854 43 chain 310283 chr11 135086622 + 39561282 39565108 HERV9-int 5642 + 6 4824 6608 593 6 5 191 5 4 81 0 85 77 89 5 60 3 0 165 4 6 351 0 18 1237 0 37 89 7 942 408 1 0 157 0 5 302 chain 67122 chr11 135086622 + 39566205 39567289 LTR12 884 + 0 884 24676 24 1 0 70 0 2 250 106 0 31 2 0 27 13 14 179 103 0 141 12 8 72 0 13 53 chain 2332 chr11 135086622 + 39566589 39566656 LTR12 884 + 344 392 102930 21 1 0 10 28 10 7 chain 355235 chr11 135086622 + 39603153 39607118 L1PA3long 6157 + 2186 6157 5854 398 0 1 104 2 1 478 0 3 6 3 0 6 2 0 79 2 1 426 0 1 278 1 5 29 0 3 782 0 1 1369 chain 62275 chr11 135086622 + 39609539 39610230 L1PA3long 6157 + 5466 6157 25801 691 chain 164153 chr11 135086622 + 39634715 39636583 L1PA5 6144 + 4208 6086 11473 1086 0 3 674 3 1 17 0 9 88 chain 21674 chr11 135086622 + 39714551 39714813 L1PA7 6471 + 6211 6468 54263 99 1 0 151 4 0 7 chain 123460 chr11 135086622 + 39715366 39716929 THE1A-int 1579 + 0 1578 14947 332 0 6 245 0 13 14 5 3 198 5 0 319 3 4 328 7 0 6 6 14 17 8 9 70 chain 30849 chr11 135086622 + 39734125 39734547 LTR7B 505 + 0 495 41267 108 0 10 57 0 38 12 3 27 26 0 2 85 1 0 23 0 1 52 18 17 37 chain 30017 chr11 135086622 + 39740631 39741053 LTR7B 505 + 0 495 42034 108 0 10 57 15 77 28 0 2 80 1 0 26 0 1 52 14 13 41 chain 481786 chr11 135086622 + 39755039 39760555 L1PA4 6152 + 0 5521 3592 340 2 0 215 0 5 6 9 0 7 0 3 182 0 19 57 17 0 141 0 1 1206 0 2 132 0 4 48 5 4 3149 chain 13770 chr11 135086622 + 39790786 39791152 THE1B 368 + 0 368 63922 19 1 0 4 1 0 85 26 27 42 72 76 53 49 48 14 chain 143019 chr11 135086622 + 39799211 39800864 L1PA5 6144 + 2740 4397 12858 50 17 20 469 1 0 1000 0 2 116 chain 275707 chr11 135086622 + 39810672 39814650 L1PA10 4194 + 182 4150 7559 5 2 0 13 0 1 4 7 1 10 22 16 9 1 0 4 6 5 13 4 0 4 0 1 4 0 1 13 1 0 8 48 52 10 1 0 5 16 10 9 1 0 10 6 0 6 4 0 7 3 0 69 31 29 67 0 7 103 1 2 48 0 1 178 38 18 466 2 0 135 4 3 52 0 2 142 8 0 27 1 0 5 5 2 244 2 1 186 0 3 275 0 2 156 0 49 28 4 8 22 1 0 43 5 6 84 0 1 115 1 2 138 6 8 34 0 1 536 1 0 4 0 1 376 19 11 23 4 1 33 chain 539516 chr11 135086622 + 39846656 39852646 L1PA2 6032 + 1 6021 1371 1167 0 1 237 2 1 1353 0 11 272 1 0 350 0 1 448 0 4 26 1 4 730 0 12 1403 chain 254349 chr11 135086622 + 39876580 39879716 L1PA7 6471 + 3297 6459 8125 247 0 4 136 3 4 148 0 1 56 4 0 188 3 0 5 0 3 8 0 1 107 0 1 7 0 3 45 1 0 216 0 4 4 0 1 299 0 1 266 0 13 534 5 4 18 1 0 79 1 4 755 chain 525980 chr11 135086622 + 39881068 39887029 L1PA3long 6157 + 6 6142 2002 144 18 19 75 1 0 496 0 169 1416 0 1 2173 0 4 803 0 1 835 chain 445019 chr11 135086622 + 39888257 39893390 L1PA4 6152 + 1004 6143 4472 39 0 2 476 4 0 7 0 1 442 0 1 721 0 5 10 5 0 37 1 2 524 3 0 236 0 1 1528 0 1 337 6 12 757 chain 71401 chr11 135086622 + 39901740 39902583 L1PA7 6471 + 5618 6461 23675 843 chain 29111 chr11 135086622 + 39921004 39921380 THE1A-int 1579 + 0 381 43171 15 1 3 95 0 3 265 chain 27539 chr11 135086622 + 39922901 39923256 THE1A 353 + 0 353 45532 15 3 1 31 0 1 46 1 0 259 chain 90427 chr11 135086622 + 39947836 39949389 L1PA13 3608 + 138 1684 19604 26 17 19 18 55 45 39 12 10 36 10 20 64 1 0 4 45 45 17 1 0 11 16 14 10 2 0 16 1 0 99 2 0 207 1 4 13 9 10 130 0 2 22 58 59 18 18 11 201 2 3 39 15 16 318 chain 521252 chr11 135086622 + 39984014 39990193 L1PA5 6144 + 0 6141 2216 289 10 1 514 14 0 23 18 1 200 1 2 4 1 0 35 7 10 90 9 0 790 1 0 410 8 0 2391 0 22 512 1 0 841 4 0 6 chain 57589 chr11 135086622 + 39990246 39990948 LTR30 714 + 0 714 27083 477 8 21 64 1 0 152 chain 36161 chr11 135086622 + 39999649 40000099 MER4A1 472 + 1 472 37302 225 6 27 219 chain 16513 chr11 135086622 + 40017672 40017979 THE1B 368 + 0 356 60353 44 0 15 111 2 1 11 71 106 68 chain 58129 chr11 135086622 + 40028992 40029686 LTR30 714 + 11 714 26927 213 1 10 215 11 12 164 1 0 89 chain 55710 chr11 135086622 + 40035134 40035907 MER4E1 777 + 12 769 27661 9 7 0 38 7 6 124 2 0 7 11 13 18 0 1 75 1 0 239 13 5 222 chain 275112 chr11 135086622 + 40038699 40042775 L1PA5 6144 + 1526 4732 7579 667 0 2 145 882 0 271 0 1 352 1 2 71 0 1 132 1 0 335 0 4 366 1 0 4 0 1 401 0 2 68 0 2 202 0 1 66 1 0 110 chain 118084 chr11 135086622 + 40042775 40044162 L1PA5 6144 + 4734 6124 15875 560 2 3 439 0 1 263 4 5 119 chain 33522 chr11 135086622 + 40048863 40049327 MER9a3 513 + 0 492 39068 18 0 2 150 3 13 70 6 5 50 8 29 97 0 1 37 8 3 17 chain 264481 chr11 135086622 + 40100854 40105249 MER61-int 3695 + 0 3690 7840 46 1 0 224 10 9 38 0 2 38 0 4 35 0 1 110 3 15 13 8 7 66 0 4 26 2 0 10 0 1 130 0 3 7 0 4 101 309 0 378 436 20 4 0 1 339 0 6 34 3 4 201 0 1 273 0 4 9 9 5 12 0 3 24 1 5 12 2 0 189 0 1 27 0 1 168 2 0 62 0 2 89 1 0 85 16 15 116 1 0 31 27 28 109 2 0 9 2 0 170 40 16 142 0 1 83 0 1 4 6 13 10 6 8 76 3 0 5 chain 61614 chr11 135086622 + 40123246 40124106 L1MA3 4352 + 2225 3099 25959 19 4 8 14 0 4 43 1 0 53 0 4 79 1 0 67 5 9 44 18 13 473 12 17 27 chain 385081 chr11 135086622 + 40153009 40158406 L1PB1 5432 + 19 5424 5397 27 17 18 184 1 0 6 0 2 189 4 5 94 1 0 7 0 1 5 2 1 50 1 0 207 3 2 66 0 12 362 22 118 20 2 1 6 2 0 7 24 9 202 0 10 339 7 8 194 11 6 117 0 1 160 0 1 67 1 2 317 1 0 96 4 8 447 2 6 167 0 1 161 4 0 6 63 0 8 0 1 192 10 11 218 0 4 58 1 2 203 5 6 184 2 0 22 0 1 274 16 13 36 4 2 134 15 13 18 1 0 13 16 11 9 2 0 40 1 0 4 0 1 8 2 1 16 1 0 44 1 0 15 3 0 7 18 8 16 8 5 14 3 1 23 1 0 4 0 1 9 8 7 13 1 0 16 1 0 4 chain 180620 chr11 135086622 + 40192174 40194445 L1P3 4156 + 3 2295 10561 83 1 2 137 0 15 9 14 13 57 2 1 96 0 1 680 0 1 4 1 0 52 0 1 895 6 7 103 0 4 131 chain 29105 chr11 135086622 + 40194451 40194778 L1PA7 6471 + 6141 6468 43179 327 chain 37667 chr11 135086622 + 40221550 40222012 LTR2 463 + 0 463 36291 359 15 16 88 chain 67506 chr11 135086622 + 40259815 40260550 L1PA3long 6157 + 5408 6143 24565 735 chain 94868 chr11 135086622 + 40261716 40262881 L1PA7 6471 + 5187 6360 18926 86 0 2 58 0 7 281 1 0 79 2 3 47 25 22 76 1 2 286 0 1 223 chain 23967 chr11 135086622 + 40361528 40361970 L1PA13 3608 + 3144 3548 50844 16 1 0 71 0 4 39 2 0 44 12 0 18 1 0 55 8 5 47 2 0 5 2 0 20 1 0 19 0 3 7 18 7 14 1 0 6 7 1 10 4 1 12 chain 22214 chr11 135086622 + 40385597 40385863 AluSc 308 + 11 277 53529 266 chain 50270 chr11 135086622 + 40399146 40399693 L1PA3long 6157 + 5610 6157 29459 547 chain 31325 chr11 135086622 + 40430776 40431110 L1PA2 6032 + 5698 6032 40869 334 chain 24247 chr11 135086622 + 40451813 40452147 L1PA4 6152 + 11 1027 50422 146 13 7 122 0 683 16 0 5 37 chain 497633 chr11 135086622 + 40469086 40475601 L1PA7 6471 + 3 6461 3217 406 1 2 1218 1 3 629 1 0 238 4 36 97 6 0 55 0 195 14 0 3 197 1 5 50 300 0 398 0 4 58 0 1 221 7 8 82 0 1 56 0 1 15 4 1 11 1 4 40 0 1 216 0 1 98 2 1 291 0 1 250 1 2 42 3 1 25 5 6 32 0 1 21 1 21 235 2 1 320 1 0 100 0 3 12 22 1 355 0 1 218 7 8 145 chain 127353 chr11 135086622 + 40517644 40519246 L1PA7 6471 + 4853 6466 14379 96 10 0 246 1 2 424 0 3 76 0 2 16 3 6 85 19 19 14 3 5 163 1 7 150 0 4 295 chain 9186 chr11 135086622 + 40519678 40519791 Tigger1 2417 + 1536 1649 72154 113 chain 78286 chr11 135086622 + 40616026 40616909 L1PA4 6152 + 5257 6140 22030 883 chain 15119 chr11 135086622 + 40681741 40682083 L1PB1 5432 + 5110 5420 62132 4 1 0 24 1 0 9 16 11 9 2 0 53 2 1 16 1 0 41 43 30 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 31562 chr11 135086622 + 40729895 40730267 L1PA2 6032 + 5658 6032 40691 57 0 1 157 1 0 7 0 4 135 2 0 13 chain 92693 chr11 135086622 + 40737125 40738253 L1PA7 6471 + 4214 5342 19237 272 7 8 173 5 3 24 5 6 642 chain 34909 chr11 135086622 + 40750410 40750804 L1PA4 6152 + 5747 6143 38090 232 0 1 60 0 1 102 chain 62160 chr11 135086622 + 40792444 40793143 L1PA5 6144 + 5442 6140 25829 30 1 0 668 chain 4277 chr11 135086622 + 40870373 40870451 MER54B 801 + 4 81 89641 20 16 15 42 chain 85054 chr11 135086622 + 40870462 40871524 MER11B 1079 + 11 1079 20610 248 3 0 167 0 15 104 0 1 14 38 35 96 0 1 78 6 0 283 7 8 18 chain 3808 chr11 135086622 + 40871550 40871592 Charlie3 2679 + 1380 1422 92788 42 chain 535883 chr11 135086622 + 40910569 40916694 L1PA4 6152 + 6 6138 1572 65 1 4 3369 14 15 795 1 0 97 0 4 1783 chain 55245 chr11 135086622 + 40949388 40949995 L1P1 4361 + 1652 2259 27793 607 chain 3333 chr11 135086622 + 40972446 40972483 MSTA-int 1630 + 1587 1624 96745 37 chain 3634 chr11 135086622 + 41004745 41004784 MER4D0 881 + 768 807 94158 39 chain 34792 chr11 135086622 + 41056267 41056794 L1PA15 4387 + 3530 4045 38167 5 1 0 34 15 10 234 0 2 12 5 0 27 0 1 32 23 20 25 1 0 113 chain 212838 chr11 135086622 + 41068427 41071415 L1PA8 5853 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992 66394 28 0 15 29 chain 2703 chr11 135086622 + 41304634 41304670 SVA_F 1814 + 845 880 102330 10 1 0 25 chain 3296 chr11 135086622 + 41304685 41304723 SVA_F 1814 + 847 884 97052 8 1 0 29 chain 2506 chr11 135086622 + 41304727 41304766 SVA_F 1814 + 889 928 49295 39 chain 2659 chr11 135086622 + 41304838 41304871 SVA_F 1814 + 853 885 98441 2 1 0 30 chain 843 chr11 135086622 + 41304879 41304931 SVA_F 1814 + 845 895 65884 10 1 0 33 1 0 7 chain 17739 chr11 135086622 + 41314572 41314805 L1PA6 6164 + 5928 6162 58964 80 11 12 142 chain 10619 chr11 135086622 + 41395937 41396149 MER30 238 + 0 236 69189 70 63 88 32 1 0 46 chain 28190 chr11 135086622 + 41427669 41428110 LTR7 482 + 0 469 44578 101 70 14 17 0 51 41 5 37 44 0 1 163 chain 27076 chr11 135086622 + 41428979 41429359 THE1C 375 + 2 375 46161 77 22 23 71 7 0 176 1 0 26 chain 4914 chr11 135086622 + 41463521 41463582 MLT1A0 366 + 80 141 86096 61 chain 5560 chr11 135086622 + 41490188 41490250 L1PB4 2604 + 1091 1153 82988 62 chain 6379 chr11 135086622 + 41497301 41497470 Tigger7 736 + 89 262 79748 58 77 81 34 chain 501170 chr11 135086622 + 41544733 41550917 L1PA6 6164 + 0 6162 3095 64 5 13 5 2 0 328 0 1 6 1 0 120 1 2 78 7 18 320 0 1 766 1 0 491 43 7 107 14 0 817 1 2 43 0 1 76 4 7 185 2 1 70 0 1 131 12 0 988 12 11 220 0 1 433 0 1 83 1 0 428 0 1 144 0 2 29 4 18 142 chain 122618 chr11 135086622 + 41552682 41554334 THE1A-int 1579 + 0 1579 15092 12 3 5 36 0 1 235 74 0 200 0 1 160 0 1 4 8 10 482 15 9 423 chain 17975 chr11 135086622 + 41554334 41554719 THE1A 353 + 0 353 58681 47 0 1 32 53 0 12 68 89 17 1 0 7 0 3 6 3 0 139 chain 4918 chr11 135086622 + 41581675 41581753 MER3 215 + 28 107 86065 38 9 10 31 chain 425669 chr11 135086622 + 41599627 41604742 L1PA6 6164 + 0 5833 4805 88 0 735 79 1 5 814 2 1 442 0 1 47 0 2 110 0 2 198 0 2 250 9 4 403 0 2 513 4 0 245 1 2 858 41 9 388 0 8 107 0 3 515 chain 33538 chr11 135086622 + 41614309 41614776 LTR19A 502 + 2 502 39052 189 11 50 63 1 0 97 11 7 23 2 0 58 0 1 12 chain 16870 chr11 135086622 + 41623307 41623521 LTR12C 1709 + 932 1192 59946 139 0 47 31 1 0 43 chain 5002 chr11 135086622 + 41623534 41623692 LTR12C 1709 + 879 1037 66491 38 0 37 50 43 6 27 chain 58375 chr11 135086622 + 41695576 41696199 L1PA2 6032 + 4918 5541 26841 623 chain 238735 chr11 135086622 + 41741105 41743825 L1PA4 6152 + 2337 5066 8498 1194 0 1 79 1 0 431 0 1 308 0 6 579 0 2 128 chain 54883 chr11 135086622 + 41777602 41778693 MER4E1 777 + 2 769 27911 23 11 1 383 330 0 132 3 0 5 18 12 61 0 25 125 chain 23611 chr11 135086622 + 41778028 41778302 L1PA5 6144 + 5860 6134 51411 274 chain 29986 chr11 135086622 + 41800745 41801063 AluYb8 318 + 0 317 42068 190 1 0 127 chain 14722 chr11 135086622 + 41849049 41849226 MER49 923 + 586 763 62639 177 chain 70341 chr11 135086622 + 41887080 41887863 L1PA3long 6157 + 5361 6144 23905 783 chain 42739 chr11 135086622 + 41978958 41979496 LTR10F 562 + 0 562 32926 81 5 10 71 0 11 16 0 11 31 3 0 331 chain 142633 chr11 135086622 + 42056192 42057816 L1PA5 6144 + 4456 6087 12882 245 1 0 593 1 0 690 0 10 4 1 0 89 chain 38927 chr11 135086622 + 42064351 42064893 MER41C 542 + 4 542 35411 45 0 1 37 0 2 200 29 24 22 6 4 203 chain 10045 chr11 135086622 + 42120988 42121098 LTR7Y 441 + 331 441 70317 110 chain 246258 chr11 135086622 + 42121098 42124125 HERVH-int 3825 + 0 3120 8321 484 0 56 23 9 8 9 1 0 24 29 0 14 1 0 12 8 46 22 2 1 56 3 1 7 0 2 14 0 3 356 0 1 492 0 1 53 4 31 1404 chain 34936 chr11 135086622 + 42124880 42125302 LTR7Y 441 + 0 393 38066 197 31 0 142 0 2 52 chain 111083 chr11 135086622 + 42156510 42157726 L1PA3long 6157 + 4943 6156 16927 462 3 0 751 chain 492886 chr11 135086622 + 42205070 42211284 L1PA7 6471 + 3 6456 3346 177 0 1 4 1 0 43 24 35 136 0 1 3 0 1 87 0 4 24 4 5 96 6 5 31 1 2 306 0 3 29 22 21 56 0 19 1065 3 7 13 0 1 315 0 1 138 16 0 36 1 2 93 0 1 239 24 0 80 1 2 121 18 14 278 5 6 180 0 1 246 0 1 319 8 9 430 0 1 213 2 227 483 0 4 82 12 14 600 14 13 129 chain 68637 chr11 135086622 + 42216109 42216850 L1PA2 6032 + 5289 6031 24300 4 0 1 737 chain 55490 chr11 135086622 + 42220488 42223145 L1MA3 4352 + 2488 4315 27725 23 5 0 145 3 19 33 0 6 143 4 3 122 23 22 111 1663 842 137 121 101 62 3 1 24 1 0 6 1 0 27 chain 44415 chr11 135086622 + 42221960 42222482 L1PA7 6471 + 5771 6294 31876 384 0 1 138 chain 12157 chr11 135086622 + 42222496 42222652 L1PA7 6471 + 6316 6464 66555 11 8 0 137 chain 95554 chr11 135086622 + 42291809 42293193 L1PA11 4918 + 3132 4508 18835 100 0 4 131 15 2 58 1 0 62 5 18 33 6 7 110 27 6 118 0 5 71 14 24 48 0 4 192 1 2 201 5 0 67 16 13 58 31 28 14 chain 5532 chr11 135086622 + 42354877 42355000 MLT2C1 407 + 115 232 83106 28 39 34 37 1 0 18 chain 71569 chr11 135086622 + 42367790 42368747 THE1B-int 1605 + 176 1595 23642 126 0 1 123 0 25 208 0 1 4 1 0 126 32 467 331 0 1 6 chain 525505 chr11 135086622 + 42376826 42382945 L1PA5 6144 + 0 6129 2020 797 0 1 610 1 6 435 1 0 371 6 7 86 6 4 404 0 1 314 0 1 1280 12 10 330 0 1 341 0 4 904 0 1 221 chain 188335 chr11 135086622 + 42385969 42388266 HERVL-int 5654 + 3316 5654 10193 22 4 1 69 5 6 195 7 17 309 9 11 69 7 10 27 1 2 335 11 16 352 0 6 136 1 4 193 0 10 271 0 2 51 0 1 223 chain 43258 chr11 135086622 + 42400838 42401382 MLT2A2 560 + 0 560 32606 204 0 5 192 3 14 145 chain 2839 chr11 135086622 + 42421002 42421036 L1ME1 1623 + 1240 1274 101323 34 chain 39475 chr11 135086622 + 42423236 42423713 L1PA6 6164 + 5685 6162 35026 141 0 1 189 1 0 146 chain 247752 chr11 135086622 + 42457509 42460255 L1PA3long 6157 + 3411 6157 8291 971 0 1 1292 1 0 482 chain 138214 chr11 135086622 + 42483698 42485378 L1PA7 6471 + 4780 6467 13246 175 1 0 26 1 0 4 0 1 724 3 1 431 2 3 99 5 13 56 0 1 153 chain 27201 chr11 135086622 + 42487427 42487782 THE1A 353 + 0 353 45964 109 2 1 92 1 0 151 chain 28293 chr11 135086622 + 42496360 42496681 L1PA5 6144 + 5291 5605 44428 7 7 0 307 chain 46396 chr11 135086622 + 42496682 42497218 L1PA5 6144 + 5605 6141 30888 536 chain 472203 chr11 135086622 + 42514647 42519972 L1PA4 6152 + 1 5334 3806 1708 2 1 376 0 1 1429 2 0 666 0 2 168 0 4 948 0 4 26 chain 20221 chr11 135086622 + 42634885 42635176 THE1A 353 + 0 351 56116 102 8 71 43 3 0 19 1 0 5 1 2 109 chain 115489 chr11 135086622 + 42635178 42636744 THE1A-int 1579 + 0 1567 16313 152 0 10 80 1 2 25 0 3 404 11 12 27 0 2 42 1 0 6 1 2 163 1 0 6 21 3 16 17 18 242 4 5 73 9 10 264 chain 18188 chr11 135086622 + 42636756 42636993 THE1A 353 + 0 233 58476 111 1 0 106 3 0 16 chain 127467 chr11 135086622 + 42679642 42681027 L1PA2 6032 + 4643 6027 14358 1183 1 0 201 chain 477790 chr11 135086622 + 42688027 42693532 L1PA4 6152 + 8 5522 3678 1470 0 1 905 0 4 778 9 3 83 0 12 425 2 0 1833 chain 23727 chr11 135086622 + 42738078 42738402 L1PA7 6471 + 6150 6469 51235 130 3 1 16 0 1 4 1 0 5 14 14 140 3 0 8 chain 175424 chr11 135086622 + 42790581 42792523 L1PA4 6152 + 4209 6151 10805 1942 chain 27504 chr11 135086622 + 42793048 42793420 THE1C 375 + 5 375 45578 113 0 1 6 3 0 118 5 6 25 0 1 4 1 0 70 1 0 26 chain 156467 chr11 135086622 + 42796933 42798677 L1PA3long 6157 + 4415 6157 11970 625 1 0 58 5 5 280 1 0 774 chain 3569 chr11 135086622 + 42851889 42851936 L1MEc 1507 + 1005 1051 94666 21 1 0 25 chain 134716 chr11 135086622 + 42873736 42875395 LTR12C 1709 + 0 1709 13567 177 0 1 117 9 10 113 10 15 379 0 40 60 0 2 198 1 0 4 4 2 20 2 1 85 0 4 73 5 6 402 chain 128797 chr11 135086622 + 42881200 42882920 LTR12C 1709 + 0 1709 14177 277 4 0 6 5 0 8 6 16 454 117 0 76 1 0 273 1 0 6 4 2 20 2 1 85 0 4 109 1 5 74 0 102 191 chain 3546 chr11 135086622 + 42881969 42882011 LTR12C 1709 + 651 693 72842 42 chain 4650 chr11 135086622 + 42882011 42882077 LTR12C 1709 + 852 920 50764 63 0 2 3 chain 29533 chr11 135086622 + 42898961 42899288 L1PA4 6152 + 3892 4219 42571 327 chain 25761 chr11 135086622 + 42899584 42899960 THE1C 375 + 0 375 48079 125 3 0 58 2 3 9 14 10 74 5 10 86 chain 87083 chr11 135086622 + 42917444 42918523 L1PA7 6471 + 2192 3275 20220 509 1 0 188 8 12 195 0 4 36 4 1 138 chain 11846 chr11 135086622 + 42940092 42940251 L1PA8 5853 + 5696 5853 67121 44 2 1 19 1 0 93 chain 536469 chr11 135086622 + 42940338 42946338 L1PA3long 6157 + 4 6156 1534 147 0 1 212 0 1 221 0 3 187 0 128 142 1 0 62 0 3 906 0 1 1310 0 18 2662 1 0 144 1 0 4 chain 120980 chr11 135086622 + 42949693 42951156 LTR12C 1709 + 0 1709 15351 286 9 0 433 0 118 275 2 0 5 3 1 106 0 4 228 2 8 12 0 131 102 chain 210752 chr11 135086622 + 42951962 42954270 L1PA3long 6157 + 3591 5903 9328 96 0 1 49 0 1 616 0 4 118 2 0 1427 chain 21834 chr11 135086622 + 42954270 42954522 L1PA3long 6157 + 5904 6155 54060 236 1 0 15 chain 2944 chr11 135086622 + 42977377 42977413 MER5A 189 + 30 66 100464 36 chain 75344 chr11 135086622 + 42981489 42982441 L1PA8 5853 + 4897 5845 22758 113 2 0 74 0 2 157 0 3 318 6 5 40 2 0 70 12 10 51 2 1 19 1 0 85 chain 28340 chr11 135086622 + 42989793 42990112 L1PA3long 6157 + 5822 6141 44355 319 chain 21071 chr11 135086622 + 43102868 43103129 AluY 311 + 40 301 55037 83 1 0 9 1 2 167 chain 112141 chr11 135086622 + 43193353 43194625 L1PA6 6164 + 4877 6151 16793 305 2 3 129 0 1 836 chain 27122 chr11 135086622 + 43215545 43215913 THE1C 375 + 7 375 46092 8 2 0 127 0 4 101 12 11 92 1 0 25 chain 158514 chr11 135086622 + 43254517 43256375 L1PA6 6164 + 4273 6162 11838 36 0 1 435 0 12 558 2 0 516 0 1 171 1 14 5 1 0 54 1 8 78 chain 12384 chr11 135086622 + 43258782 43258936 L1PA8A 6298 + 6136 6291 66170 43 1 2 110 chain 6426 chr11 135086622 + 43331260 43331348 HY4 93 + 0 84 79584 71 4 0 13 chain 24561 chr11 135086622 + 43374169 43374575 L1P4 1494 + 1034 1446 49919 237 4 5 71 24 30 13 13 11 9 2 0 3 1 0 8 1 5 20 chain 2911 chr11 135086622 + 43412663 43412694 Tigger4a 237 - 189 220 100755 31 chain 29585 chr11 135086622 + 43484790 43485217 MER1A 529 + 19 529 42499 71 1 10 51 3 67 21 8 4 133 0 10 70 19 23 50 chain 14191 chr11 135086622 + 43544112 43544276 L1PA3long 6157 + 5993 6157 63333 164 chain 7207 chr11 135086622 + 43659586 43660833 L1ME1 1623 + 810 1485 76925 8 1 0 40 18 15 16 14 13 23 706 133 17 164 154 36 177 193 27 chain 17681 chr11 135086622 + 43679284 43679478 L1PA5 6144 + 4069 4263 59028 194 chain 60042 chr11 135086622 + 43696288 43697171 L1PA8 5853 + 4957 5844 26361 49 2 8 43 0 2 34 6 7 222 0 4 188 0 1 49 2 1 43 2 0 50 51 0 10 0 46 25 4 3 20 1 0 82 chain 9396 chr11 135086622 + 43712450 43712714 MER4B 649 + 294 576 71712 33 16 29 67 35 30 30 65 75 18 chain 23406 chr11 135086622 + 43731984 43732358 THE1C 375 + 2 375 51748 21 11 7 29 14 13 35 1 2 26 0 4 39 20 19 153 1 0 20 0 1 4 chain 42488 chr11 135086622 + 43747422 43747974 LTR14 556 + 0 556 33070 4 0 1 5 1 0 436 8 0 9 3 10 20 0 5 66 chain 94508 chr11 135086622 + 43777781 43778814 L1PA3long 6157 + 2941 3973 18964 236 1 0 796 chain 3005 chr11 135086622 + 43858728 43858860 L1MC4 1079 + 690 860 99796 33 83 121 16 chain 32117 chr11 135086622 + 43949861 43950368 MER4A 717 + 130 702 40255 25 8 17 40 46 61 96 1 41 47 1 2 37 1 0 10 15 16 180 chain 35991 chr11 135086622 + 43952350 43952803 LTR2 463 + 0 463 37419 55 0 3 71 0 3 219 7 11 101 chain 10262 chr11 135086622 + 43953061 43953183 MER41B 635 + 0 124 69875 117 0 2 5 chain 6936 chr11 135086622 + 43999909 43999989 MER2 342 + 135 215 77825 80 chain 14148 chr11 135086622 + 44039309 44039625 L1PB1 5432 + 5120 5404 63383 18 2 0 9 1 0 7 19 13 53 2 1 15 1 0 41 10 9 10 1 0 4 24 12 12 10 7 15 2 0 24 1 0 21 1 0 13 chain 5858 chr11 135086622 + 44371656 44371726 MER53 195 + 0 70 81662 70 chain 7962 chr11 135086622 + 44413758 44413937 MER2 342 + 139 320 74970 89 75 77 15 chain 27702 chr11 135086622 + 44414859 44415246 MLT2A1 477 + 0 383 45316 141 1 2 18 9 13 36 0 1 159 10 0 13 chain 115156 chr11 135086622 + 44415524 44416917 HERVL-int 5654 + 0 1379 16362 104 0 2 348 19 2 27 0 1 895 chain 470950 chr11 135086622 + 44437893 44443444 L1PA7 6471 + 873 6464 3827 97 0 1 426 0 4 392 0 1 115 0 1 255 1 6 330 0 2 510 0 8 72 0 7 18 0 1 540 3 0 360 0 1 32 1 0 126 0 7 132 0 1 137 0 6 783 4 5 165 0 1 206 8 7 831 2 0 5 chain 67261 chr11 135086622 + 44477005 44477798 THE1A-int 1579 + 776 1569 24633 793 chain 29307 chr11 135086622 + 44486698 44487067 MER48 407 + 15 407 42878 15 0 1 4 1 0 203 0 1 57 1 23 88 chain 2884 chr11 135086622 + 44500869 44500903 MLT1C 463 + 57 91 100968 34 chain 25179 chr11 135086622 + 44544092 44544452 MLT2A1 477 + 0 393 48991 37 11 13 89 1 2 28 1 5 79 0 28 45 0 1 58 3 0 8 chain 470124 chr11 135086622 + 44544589 44550255 HERVL-int 5654 + 0 5654 3852 304 0 8 142 3 2 191 3 2 29 1 0 4 0 1 224 4 3 7 0 5 165 1 0 115 0 1 554 12 0 1272 0 1 1163 4 0 111 1 0 284 0 8 7 9 1 197 1 0 188 4 3 233 8 5 204 0 1 32 3 0 26 0 1 160 chain 144386 chr11 135086622 + 44662969 44664644 SVA_D 2077 + 37 2077 12744 15 0 25 124 0 11 501 0 339 204 51 0 96 0 49 44 1 0 10 1 0 611 6 0 11 chain 3837 chr11 135086622 + 44663813 44663864 SVA_D 2077 + 1080 1129 40077 13 1 0 10 1 0 26 chain 14390 chr11 135086622 + 44672375 44672738 MSTA 426 + 27 407 63044 73 162 180 101 1 0 26 chain 4004 chr11 135086622 + 44775257 44775307 MER53 195 - 121 171 91421 50 chain 25130 chr11 135086622 + 45001198 45001587 THE1D 372 + 0 368 49073 156 44 35 11 16 6 47 1 0 85 1 0 28 chain 17334 chr11 135086622 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2263 5 0 2 484 14 22 1133 0 3 564 0 4 116 0 1 39 1 0 599 0 1 211 5 6 50 0 4 954 0 3 185 0 2 478 1 0 966 1 0 330 chain 38348 chr11 135086622 + 45676193 45676731 MLT2A2 560 + 0 560 35816 87 6 5 14 0 5 72 1 0 10 22 25 181 3 14 77 0 1 57 0 4 8 chain 4903 chr11 135086622 + 45755933 45755991 MIR3 191 + 51 109 86137 58 chain 68504 chr11 135086622 + 45783585 45784607 L1PA8 5853 + 5011 5853 24334 83 0 1 420 175 0 49 1 0 46 2 0 55 0 1 12 2 1 9 1 0 52 2 1 18 2 1 93 chain 5600 chr11 135086622 + 45789581 45789668 MLT1B 390 + 280 367 82806 20 1 0 21 8 9 37 chain 42483 chr11 135086622 + 45823389 45823880 HERV1_LTRc 486 + 0 486 33073 92 3 0 358 2 0 36 chain 275625 chr11 135086622 + 45835877 45839173 L1PA7 6471 + 3157 6469 7563 167 13 22 203 0 4 283 1 0 166 1 0 48 5 1 129 0 2 483 0 4 680 1 0 260 6 5 59 2 1 36 1 0 89 0 4 309 0 1 181 0 1 25 0 1 148 chain 29563 chr11 135086622 + 45923705 45924014 AluYa5 310 + 1 310 42535 309 chain 6209 chr11 135086622 + 46062684 46062780 L1ME1 1623 + 1181 1276 80323 27 9 8 60 chain 9275 chr11 135086622 + 46090823 46090951 MER85 139 + 0 139 71961 96 3 14 29 chain 3578 chr11 135086622 + 46096925 46097271 L2a 937 + 189 525 94599 17 94 94 22 181 171 32 chain 3912 chr11 135086622 + 46163625 46163732 Charlie18a 321 + 213 321 92037 43 47 48 17 chain 25363 chr11 135086622 + 46171722 46172107 THE1C 375 + 0 375 48683 180 0 1 4 46 36 129 8 7 18 chain 19567 chr11 135086622 + 46186922 46187312 THE1D 372 + 0 372 56937 40 73 57 69 52 51 7 1 0 148 chain 6077 chr11 135086622 + 46208059 46208130 Charlie3 2679 + 373 444 80813 71 chain 7056 chr11 135086622 + 46208130 46208247 MER1A 529 + 403 515 77416 53 2 0 5 17 14 40 chain 25967 chr11 135086622 + 46219854 46220146 AluYk4 311 + 0 292 47767 292 chain 10584 chr11 135086622 + 46231869 46232085 L1MC2 1988 + 1707 1918 69257 59 4 3 32 58 54 63 chain 6995 chr11 135086622 + 46244158 46244269 HY3 101 + 0 98 77619 61 17 4 33 chain 24830 chr11 135086622 + 46519866 46520158 AluSp 311 + 9 300 49541 273 1 0 18 chain 3879 chr11 135086622 + 46567672 46567829 LTR8A 794 + 435 603 92293 16 1 0 5 88 101 17 1 0 29 chain 134678 chr11 135086622 + 46583035 46584533 L1PA3long 6157 + 4680 6157 13573 617 0 3 7 25 1 849 chain 27623 chr11 135086622 + 46585056 46585352 SVA_D 2077 + 1768 2064 45431 296 chain 23866 chr11 135086622 + 46710172 46710464 AluSp 311 + 10 301 51001 118 1 0 173 chain 171929 chr11 135086622 + 46773876 46775980 L1PA7 6471 + 4313 6470 11001 171 0 1 51 1 0 206 0 23 32 3 14 380 1 0 80 0 1 100 0 2 247 1 0 87 1 6 36 0 1 43 0 10 38 3 2 118 0 1 109 0 1 53 14 13 174 5 4 135 0 3 15 chain 2541 chr11 135086622 + 46782862 46782902 MER103C 291 + 80 121 103450 16 3 4 21 chain 42877 chr11 135086622 + 46883216 46883725 MER9a2 513 + 0 513 32847 43 1 0 122 1 0 59 0 1 91 0 5 192 chain 5434 chr11 135086622 + 46908349 46908420 MADE1 96 + 9 96 83533 37 0 16 34 chain 29304 chr11 135086622 + 46909324 46909640 AluYb8 318 + 0 317 42886 131 1 2 184 chain 26746 chr11 135086622 + 46927128 46927471 THE1A 353 + 13 353 46618 71 2 1 24 2 1 92 1 0 151 chain 132187 chr11 135086622 + 46927471 46929038 THE1A-int 1579 + 0 1571 13809 201 4 0 207 0 1 504 0 2 293 0 1 107 0 4 251 chain 27740 chr11 135086622 + 46929046 46929387 THE1A 353 + 0 341 45264 111 1 0 74 0 1 155 chain 7464 chr11 135086622 + 46987753 46987853 L1MA1 4479 + 4052 4148 76214 26 1 0 29 2 0 35 1 0 6 chain 21135 chr11 135086622 + 47008766 47009046 AluY 311 + 12 299 54966 11 0 5 19 10 11 223 0 1 17 chain 31013 chr11 135086622 + 47058931 47059305 L1PA8A 6298 + 5919 6291 41111 219 1 0 46 1 0 107 chain 12535 chr11 135086622 + 47097014 47097160 SVA_F 1814 + 845 1006 36682 10 1 0 25 0 2 16 2 1 49 3 18 40 chain 90389 chr11 135086622 + 47097160 47098325 SVA_F 1814 + 375 1813 19613 13 1 0 44 3 395 28 1 0 32 0 1 56 81 18 39 7 4 208 52 0 600 chain 6955 chr11 135086622 + 47097338 47097419 SVA_F 1814 + 1184 1265 36682 81 chain 2514 chr11 135086622 + 47097673 47097725 SVA_F 1814 + 988 1037 45807 13 2 0 10 1 0 26 chain 8661 chr11 135086622 + 47210246 47210351 LTR8 732 + 586 691 73322 105 chain 3985 chr11 135086622 + 47314376 47314443 Charlie1a 1436 + 877 946 91557 19 4 7 4 1 0 39 chain 3280 chr11 135086622 + 47464343 47464379 LTR23 429 + 311 347 97180 36 chain 3252 chr11 135086622 + 47484588 47484623 MIR 256 + 28 63 97459 35 chain 22185 chr11 135086622 + 47519584 47519876 AluY 311 + 1 296 53588 36 6 0 72 10 19 168 chain 21652 chr11 135086622 + 47540602 47540887 AluSg7 307 + 0 283 54287 43 1 0 88 0 1 10 3 0 7 3 6 34 2 0 94 chain 6306 chr11 135086622 + 47652699 47652810 MER4D 903 + 602 710 79977 59 23 15 16 0 5 13 chain 72315 chr11 135086622 + 47744902 47745860 MER11A 1151 + 0 1151 23461 55 0 99 22 8 0 118 4 0 32 0 4 113 0 1 94 0 1 145 5 6 112 0 86 20 6 15 44 1 0 16 0 1 87 0 4 76 chain 37906 chr11 135086622 + 47769430 47769893 LTR2 463 + 0 463 36134 290 1 0 72 12 13 88 chain 7945 chr11 135086622 + 47799841 47799961 Tigger3b 1229 + 67 201 75012 48 12 26 60 chain 16429 chr11 135086622 + 47829668 47829926 L1PA14 3548 + 3210 3456 60474 11 1 0 97 1 0 14 14 9 35 2 0 17 1 0 5 1 0 17 1 0 41 chain 43506 chr11 135086622 + 47844712 47845560 MER41A 554 + 0 554 32452 302 7 8 34 0 1 87 296 0 122 chain 41329 chr11 135086622 + 47860670 47861184 MER41C 542 + 0 535 33773 46 0 1 219 1 0 45 0 21 203 chain 23028 chr11 135086622 + 47868393 47868683 AluSp 311 + 11 299 52313 107 0 1 173 3 0 7 chain 7624 chr11 135086622 + 47876971 47877195 L1MB3 1562 + 1360 1554 75812 41 59 32 5 2 0 13 9 12 53 18 17 8 3 0 13 chain 102080 chr11 135086622 + 47892275 47893747 SVA_B 1603 + 0 1264 18056 21 7 12 6 0 2 708 3 1 184 7 3 6 249 0 15 4 44 262 chain 5161 chr11 135086622 + 47893217 47893321 SVA_B 1603 + 984 1053 71951 1 4 9 16 44 7 14 3 0 22 chain 4803 chr11 135086622 + 47998235 47998321 L1MA4 2864 + 2731 2809 86680 7 4 0 3 2 0 24 5 3 41 chain 4723 chr11 135086622 + 48038787 48038846 MER41B 635 + 494 554 87117 17 0 1 42 chain 47107 chr11 135086622 + 48184986 48192345 MER4E1 777 + 0 769 30608 17 10 0 167 0 3 144 6577 0 210 7 0 20 4 5 203 chain 117234 chr11 135086622 + 48202025 48203578 L1PBa 3878 + 1796 3380 16011 146 0 3 5 11 8 124 0 1 375 1 2 247 0 2 144 9 38 100 4 5 218 9 6 160 chain 6407 chr11 135086622 + 48229791 48229876 LTR12C 1709 + 669 832 79648 48 0 78 37 chain 14094 chr11 135086622 + 48255766 48255927 L1PA7 6471 + 6309 6470 63465 161 chain 124018 chr11 135086622 + 48259198 48260589 L1PA4 6152 + 3960 5351 14844 1391 chain 24841 chr11 135086622 + 48279132 48279423 AluSc5 308 + 11 302 49530 291 chain 41218 chr11 135086622 + 48286975 48290820 L1PA4 6152 + 5308 5881 33832 7 3272 0 566 chain 361339 chr11 135086622 + 48292441 48296766 L1P1 4361 + 1 4328 5789 140 0 1 15 7 3 414 1 0 581 0 3 127 9 0 8 54 63 1026 0 3 326 0 1 453 1 0 786 0 2 197 1 0 155 1 0 23 chain 4592 chr11 135086622 + 48297811 48297868 MER4A1 472 + 415 472 87834 57 chain 52992 chr11 135086622 + 48312767 48313545 L1PA11 4918 + 3830 4578 28580 85 0 1 412 9 0 52 18 17 10 2 0 67 2 0 14 1 0 20 4 0 9 31 22 15 1 0 15 2 0 9 chain 25252 chr11 135086622 + 48340769 48341119 L1PA8 5853 + 5507 5853 48869 5 0 3 47 1 0 46 2 0 74 1 0 5 2 1 52 2 1 18 2 1 93 chain 457196 chr11 135086622 + 48345978 48351328 L1PA4 6152 + 0 5348 4206 580 1 0 233 39 22 85 1 2 526 0 1 266 0 1 650 0 1 543 0 1 1368 0 9 536 0 1 218 0 2 256 1 0 47 chain 65822 chr11 135086622 + 48394028 48394754 L1PA2 6032 + 5304 6030 24996 726 chain 50995 chr11 135086622 + 48399967 48400529 L1PA3long 6157 + 5595 6157 29217 562 chain 510740 chr11 135086622 + 48402546 48408457 L1PA4 6152 + 203 6140 2732 372 0 4 387 0 1 67 0 1 90 2 1 117 0 1 274 0 1 375 1 0 206 0 1 67 0 6 192 0 1 803 0 1 6 0 1 73 0 3 686 0 1 1134 1 7 1058 chain 16523 chr11 135086622 + 48427407 48427597 L1P1 4361 + 585 775 60337 190 chain 15745 chr11 135086622 + 48440837 48441071 L1PA7 6471 + 6235 6467 61359 158 0 2 18 5 14 6 9 0 28 4 0 6 chain 34283 chr11 135086622 + 48472665 48473060 L1PA6 6164 + 5756 6151 38503 395 chain 31704 chr11 135086622 + 48478645 48479079 L1PA8 5853 + 5426 5853 40577 138 1 0 46 2 0 68 17 15 46 3 2 24 1 0 88 chain 27813 chr11 135086622 + 48497948 48498260 L1PA3long 6157 + 5845 6157 45165 312 chain 3029 chr11 135086622 + 48506738 48506867 THE1D-int 1627 + 1494 1621 99524 23 74 74 4 1 0 22 1 0 4 chain 3306 chr11 135086622 + 48571637 48571697 L1MA9 1812 + 1508 1566 96959 20 12 10 28 chain 57098 chr11 135086622 + 48572715 48573337 L1PA2 6032 + 4970 5592 27230 622 chain 118512 chr11 135086622 + 48575186 48593681 L1PA5 6144 + 4115 6137 15805 1215 16747 272 22 0 1 365 7 0 6 2 9 12 0 1 119 chain 54949 chr11 135086622 + 48580753 48581929 L1PA3long 6157 + 4989 6144 27893 347 23 0 671 0 2 135 chain 47623 chr11 135086622 + 48600063 48600633 L1PA4 6152 + 4250 4821 30427 504 0 1 16 6 0 6 1 7 37 chain 65716 chr11 135086622 + 48619761 48620608 L1PA7 6471 + 5614 6462 25030 37 2 0 335 1 4 141 1 2 175 12 11 143 chain 71853 chr11 135086622 + 48679937 48680811 L1PA4 6152 + 4646 5517 23580 655 3 1 48 1 0 167 chain 421700 chr11 135086622 + 48683044 48688351 L1PA4 6152 + 23 5357 4860 508 4 5 161 5 6 225 0 4 796 13 15 799 22 23 855 0 1 441 0 14 5 0 1 56 0 1 18 26 28 1316 1 0 56 chain 43656 chr11 135086622 + 48707585 48708072 SVA_A 1864 + 1377 1864 32345 487 chain 240534 chr11 135086622 + 48729276 48732257 L1P1 4361 + 1 2979 8460 121 0 14 20 2 13 18 17 8 379 1 0 247 23 6 1487 8 7 658 chain 431715 chr11 135086622 + 48734045 48739236 L1PA4 6152 + 63 5356 4724 202 0 1 194 6 0 120 1 0 118 6 7 210 0 1 502 0 91 450 3 4 1716 0 1 257 0 3 144 0 1 499 0 2 43 0 1 160 0 2 508 1 5 51 chain 198908 chr11 135086622 + 48772239 48774452 L1PA2 6032 + 3254 5469 9748 418 0 1 19 0 1 1776 chain 246501 chr11 135086622 + 48928309 48931165 L1PA3long 6157 + 3295 6156 8317 665 0 2 274 0 1 914 0 1 31 2 1 40 0 1 4 1 0 78 4 8 68 8 7 603 1 0 163 chain 35568 chr11 135086622 + 49003959 49004345 L1PA2 6032 + 5645 6031 37674 386 chain 278131 chr11 135086622 + 49139580 49143280 L1P2 5180 + 890 4624 7485 119 0 3 8 10 29 266 6 7 123 13 14 263 1 0 11 1 2 153 6 7 116 11 10 126 0 1 4 2 1 173 1 0 50 0 1 525 21 17 6 0 4 92 42 38 398 0 1 485 0 1 110 0 1 22 3 10 267 0 4 266 chain 11668 chr11 135086622 + 49149037 49149170 L1PA5 6144 + 5910 6043 67448 133 chain 7886 chr11 135086622 + 49214352 49214452 MER47A 366 + 129 229 75164 100 chain 3691 chr11 135086622 + 49222523 49222567 U2 167 + 9 53 93670 44 chain 157599 chr11 135086622 + 49311807 49313715 L1PA6 6164 + 4250 6156 11905 230 3 0 5 5 8 387 0 2 235 6 0 9 25 26 858 0 1 145 chain 22794 chr11 135086622 + 49398720 49399061 THE1B 368 + 0 356 52677 45 0 15 21 1 2 91 1 0 15 7 5 7 0 2 26 6 7 58 1 0 62 chain 92420 chr11 135086622 + 49446990 49448340 L1PB 1623 + 102 1445 19285 10 2 1 4 1 0 54 4 1 15 1 0 4 9 2 6 0 5 17 7 8 40 1 0 128 0 2 19 4 0 50 16 18 20 6 10 67 5 8 185 0 1 128 1 0 51 0 1 46 0 1 298 1 0 7 7 0 136 chain 149089 chr11 135086622 + 49462832 49464503 L1PA4 6152 + 3549 5222 12410 448 0 2 1223 chain 2512 chr11 135086622 + 49469090 49469129 MLT2A1 477 + 439 477 103594 19 2 1 18 chain 20630 chr11 135086622 + 49473049 49473296 AluSp 311 + 38 284 55592 94 1 0 152 chain 26684 chr11 135086622 + 49513406 49513753 L1PA10 4194 + 1395 1742 46709 125 3 0 5 0 3 214 chain 10812 chr11 135086622 + 49513817 49513971 HSMAR1 1287 + 1095 1251 68832 62 9 11 83 chain 83504 chr11 135086622 + 49547396 49548408 L1P2 5180 + 1176 2352 20914 451 12 180 263 0 1 252 6 0 7 0 1 21 chain 12880 chr11 135086622 + 49640521 49640735 MER30 238 + 0 225 65290 12 20 19 6 6 0 69 3 21 98 chain 47756 chr11 135086622 + 49691468 49691996 L1PA3long 6157 + 5628 6156 30376 528 chain 7564 chr11 135086622 + 49704578 49704661 L1HS 6032 + 5949 6032 75944 83 chain 547946 chr11 135086622 + 49725283 49731317 L1PA2 6032 + 1 6030 866 588 3 0 2752 7 5 2684 chain 48949 chr11 135086622 + 49764000 49764597 L1PA7 6471 + 4143 4746 29967 280 0 4 97 0 2 220 chain 30038 chr11 135086622 + 49830928 49831302 L1PA7 6471 + 6093 6466 42014 38 0 1 181 0 1 142 3 0 10 chain 402125 chr11 135086622 + 49866277 49870879 L1PA4 6152 + 1366 5976 5129 1768 1 6 163 0 3 8 4 1 1291 0 1 57 0 1 34 3 1 251 0 1 349 0 1 17 0 1 656 chain 83100 chr11 135086622 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THE1A-int 1579 + 0 1571 14668 471 0 4 27 5 4 1065 chain 479471 chr11 135086622 + 50148851 50154622 L1PA5 6144 + 3 5774 3647 468 16 17 524 0 1 271 14 0 331 0 1 3041 6 7 547 0 1 82 0 1 4 8 12 380 2 6 77 chain 81440 chr11 135086622 + 50156639 50157557 L1PA3long 6157 + 5239 6157 21348 918 chain 103576 chr11 135086622 + 50179679 50180824 L1PA2 6032 + 4886 6032 17868 215 1 0 4 0 1 589 0 1 336 chain 130913 chr11 135086622 + 50183089 50184666 LTR12C 1709 + 0 1709 13938 464 1 0 255 0 118 237 0 2 31 1 11 106 0 4 112 3 1 130 0 1 237 chain 26382 chr11 135086622 + 50188524 50188838 L1PA7 6471 + 6130 6444 47145 314 chain 7350 chr11 135086622 + 50201033 50201124 MSTB 430 + 2 93 76518 91 chain 4469 chr11 135086622 + 50202547 50202672 MLT1D 503 + 29 153 88501 50 1 0 5 8 9 10 36 35 15 chain 26958 chr11 135086622 + 50214263 50214729 LTR22B 500 + 0 500 46325 30 17 26 66 39 35 200 36 63 58 1 2 7 0 1 12 chain 42602 chr11 135086622 + 50217099 50217585 L1PA4 6152 + 5657 6152 33000 351 0 7 128 0 2 7 chain 44935 chr11 135086622 + 50265116 50265627 MER9a1 513 + 0 513 31612 454 0 2 57 chain 70351 chr11 135086622 + 50280952 50281984 MER11A 1151 + 0 1151 23902 93 23 104 19 10 18 58 8 4 147 0 1 90 12 13 24 1 0 111 6 9 86 0 2 21 10 9 10 7 40 61 0 1 6 5 1 184 2 1 38 chain 32526 chr11 135086622 + 50291941 50292340 L1PA6 6164 + 5766 6159 39927 65 0 1 178 1 0 143 6 0 6 chain 86094 chr11 135086622 + 50346424 50347450 LTR5A 1029 + 0 1029 20416 147 1 0 337 0 2 104 0 2 437 chain 282021 chr11 135086622 + 50386583 50390016 L1PA5 6144 + 2715 6134 7372 455 0 1 578 5 8 5 3 0 921 0 1 185 1 0 261 13 1 166 3 0 249 2 1 40 0 1 155 0 1 147 1 0 99 1 2 14 1 0 128 chain 67553 chr11 135086622 + 50399923 50400933 MER11A 1151 + 0 1144 24550 46 13 113 28 1 0 107 4 0 90 1 0 4 0 1 40 14 15 90 34 35 61 6 7 47 0 1 61 0 1 56 1 0 16 6 40 82 0 1 29 0 1 113 7 6 53 chain 87882 chr11 135086622 + 50497409 50498517 L1PA5 6144 + 3853 4993 20071 170 0 3 312 9 13 279 1 3 120 0 23 217 chain 23587 chr11 135086622 + 50498517 50498776 L1PA2 6032 + 5771 6030 51452 259 chain 283004 chr11 135086622 + 50510221 50513927 HERVK9-int 4720 + 36 4720 7342 13 8 5 4 1 0 66 1 0 7 2 1 26 13 12 516 0 1 377 0 3 177 0 1 49 4 5 146 0 1 50 7 931 38 1 0 4 0 1 595 3 2 155 0 52 216 4 3 81 0 1 103 1 0 438 0 1 182 0 1 113 0 1 266 0 1 39 chain 232019 chr11 135086622 + 50546489 50549058 L1PA3long 6157 + 3580 6149 8692 158 2 1 2084 0 1 325 chain 71670 chr11 135086622 + 50552912 50553830 HERVK9-int 4720 + 3370 4290 23618 493 0 1 370 8 9 47 chain 146286 chr11 135086622 + 50560890 50562578 L1PA4 6152 + 4190 5878 12591 1412 8 9 175 1 0 92 chain 476294 chr11 135086622 + 50694434 50700192 L1PA3long 6157 + 4 5744 3713 39 27 18 727 0 1 1579 1 2 327 1 0 150 0 1 356 5 6 298 1 0 139 22 11 288 0 1 1436 4 5 233 2 0 123 chain 82727 chr11 135086622 + 50713020 50713920 L1HS 6032 + 5130 6030 21082 900 chain 170060 chr11 135086622 + 50723686 50725663 L1PA3long 6157 + 3584 5563 11100 1207 0 1 333 0 1 254 1 0 4 1 2 177 chain 75208 chr11 135086622 + 50747625 50748490 L1PA3long 6157 + 4460 5326 22792 846 0 1 19 chain 20011 chr11 135086622 + 50748505 50748728 L1PA3long 6157 + 5342 5565 56375 223 chain 47599 chr11 135086622 + 51120021 51120633 L1P1 4361 + 3368 3984 30438 4 1 0 310 0 1 18 0 1 3 1 0 218 0 1 4 14 16 9 0 1 30 chain 241767 chr11 135086622 + 54552037 54554802 L1PA3long 6157 + 3380 6156 8432 4 1 0 303 0 1 323 0 8 35 0 1 494 0 1 375 0 1 1230 chain 50213 chr11 135086622 + 54571244 54571806 L1PA3long 6157 + 5595 6157 29479 562 chain 501617 chr11 135086622 + 54573828 54579736 L1PA4 6152 + 203 6146 3072 68 1 2 719 0 3 161 0 3 291 0 12 321 0 2 581 0 1 141 1 0 1329 0 1 4 2 1 615 0 1 616 1 7 67 0 5 662 0 2 328 chain 15222 chr11 135086622 + 54598438 54598627 L1P1 4361 + 586 775 62012 189 chain 18940 chr11 135086622 + 54616831 54617053 L1PA4 6152 + 4783 5006 57605 199 0 1 23 chain 31728 chr11 135086622 + 54643560 54643956 L1PA6 6164 + 5756 6151 40552 248 7 0 6 0 6 135 chain 31503 chr11 135086622 + 54649554 54649988 L1PA8 5853 + 5426 5853 40733 138 1 0 46 2 0 68 17 15 46 3 2 19 1 0 93 chain 7376 chr11 135086622 + 54677277 54677416 THE1D-int 1627 + 1484 1621 76459 33 8 9 46 19 17 28 1 0 4 chain 65737 chr11 135086622 + 54716588 54717427 L1PA7 6471 + 5622 6462 25021 19 11 9 340 0 3 138 5 6 171 1 0 154 chain 83653 chr11 135086622 + 54762832 54764146 HERVK11-int 2540 + 985 2233 20883 16 23 8 22 1 0 34 2 0 56 23 22 31 7 6 8 3 0 21 14 4 15 4 11 14 14 3 34 21 1 428 14 11 105 1 0 182 14 13 74 2 6 98 8 0 25 chain 292264 chr11 135086622 + 54787353 54790601 L1PA3long 6157 + 2816 6154 7062 3132 0 90 116 chain 429359 chr11 135086622 + 54797615 54802928 L1PA4 6152 + 2 5285 4760 670 9 7 361 1 0 14 0 1 193 13 9 2424 1 0 604 27 0 115 0 1 233 0 1 230 0 1 257 0 1 161 chain 106412 chr11 135086622 + 54833381 54834675 L1PA4 6152 + 2224 3519 17506 89 1 0 1194 0 2 10 chain 157630 chr11 135086622 + 54834677 54836509 L1PA4 6152 + 3519 5354 11902 1271 0 2 508 0 1 53 chain 519132 chr11 135086622 + 54837873 54844006 L1PA3long 6157 + 12 6157 2309 16 5 6 283 11 10 629 0 4 226 2 1 64 0 1 122 0 3 5 13 10 934 2 1 217 0 1 54 0 1 456 0 1 1169 1 0 17 0 1 75 0 1 64 0 1 107 0 2 805 0 2 77 1 0 590 0 1 188 chain 28592 chr11 135086622 + 54844048 54844392 L1PA5 6144 + 5761 6106 43971 49 1 2 294 chain 98964 chr11 135086622 + 54849946 54851079 L1HS 6032 + 7 1139 18416 249 1 0 883 chain 84532 chr11 135086622 + 54854939 54855945 LTR13 1007 + 0 1007 20708 426 3 0 496 0 4 81 chain 128 chr11 135086622 + 54871476 54871545 L1PA3long 6157 + 5028 5097 30968 69 chain 18227 chr11 135086622 + 54872601 54872833 L1PA3long 6157 + 3287 3519 58432 14 2 1 6 0 1 210 chain 68325 chr11 135086622 + 54872833 54873594 L1PA3long 6157 + 3520 4281 24379 761 chain 94159 chr11 135086622 + 54894204 54895272 L1PA3long 6157 + 4026 5096 19021 485 0 1 36 0 1 547 chain 1952 chr11 135086622 + 54895272 54896322 L1PA3long 6157 + 5097 6148 30968 600 0 1 450 chain 539887 chr11 135086622 + 54946966 54952969 L1PA2 6032 + 2 6012 1347 254 1 0 2313 0 1 562 0 1 1096 0 4 665 0 1 458 0 1 654 chain 23833 chr11 135086622 + 54955496 54955800 L1P1 4361 + 3205 3510 51050 14 1 0 66 0 1 97 0 1 126 chain 23287 chr11 135086622 + 54963048 54963301 L1PA2 6032 + 5420 5673 51947 253 chain 99472 chr11 135086622 + 54969111 55021422 L1PA3long 6157 + 3684 6157 18355 263 49839 0 1437 1 0 162 0 3 460 1 0 148 chain 70105 chr11 135086622 + 54989662 54990525 L1PA4 6152 + 4658 5521 23973 413 0 1 228 7 6 215 chain 19554 chr11 135086622 + 55018986 55019213 L1PA3long 6157 + 3721 3946 56953 11 2 0 214 chain 521173 chr11 135086622 + 55084376 55090518 L1PA3long 6157 + 6 6144 2218 1097 28 20 114 0 1 1088 1 0 540 0 1 449 4 5 1024 9 13 1020 1 0 631 1 0 135 chain 3685 chr11 135086622 + 55108793 55108836 L1PA3long 6157 + 3070 3113 93713 43 chain 25800 chr11 135086622 + 55108836 55109142 L1PA3long 6157 + 3114 3421 48013 256 3 4 47 chain 221914 chr11 135086622 + 55109144 55111603 L1PA3long 6157 + 3425 5886 8984 1222 0 1 659 0 1 578 chain 240136 chr11 135086622 + 55127866 55130840 L1P1 4361 + 4 2979 8466 118 0 14 416 7 6 16 1 0 240 30 13 142 6 5 63 0 2 555 0 1 443 1 2 71 0 1 4 1 0 197 0 3 663 chain 434168 chr11 135086622 + 55132725 55138049 L1PA4 6152 + 16 5354 4682 118 14 0 8 44 58 65 0 1 190 12 6 114 1 0 122 1 2 35 0 1 177 1 2 334 1 2 187 0 3 991 0 4 766 2 1 21 0 1 445 11 12 760 0 1 186 0 1 648 0 4 16 1 3 53 chain 41415 chr11 135086622 + 55199042 55199488 L1HS 6032 + 4868 5314 33726 446 chain 38930 chr11 135086622 + 55201886 55202323 L1PA2 6032 + 5595 6032 35408 437 chain 64030 chr11 135086622 + 55209773 55210544 L1PA4 6152 + 5379 6152 25406 46 0 1 577 0 1 148 chain 27369 chr11 135086622 + 55289897 55290265 L1PA7 6471 + 6093 6468 45738 38 0 1 65 6 11 100 1 2 158 chain 25874 chr11 135086622 + 55322352 55322635 L1PA3long 6157 + 5609 5892 47907 283 chain 22868 chr11 135086622 + 55322636 55322892 L1PA3long 6157 + 5892 6149 52551 122 0 1 134 chain 12731 chr11 135086622 + 55344973 55345112 L1PA2 6032 + 5880 6019 65564 139 chain 405194 chr11 135086622 + 55374651 55379425 L1PA4 6152 + 1361 6152 5091 676 2 3 61 0 3 1061 1 0 44 2 1 476 1 2 659 3 4 78 0 10 406 3 5 269 1 0 4 0 1 1019 0 1 8 chain 75288 chr11 135086622 + 55430994 55431959 LTR5_Hs 974 + 0 974 22772 288 0 1 150 0 3 375 10 17 16 23 21 103 chain 76832 chr11 135086622 + 55441680 55442543 L1PA3long 6157 + 3861 4726 22368 85 0 1 693 4 5 81 chain 534827 chr11 135086622 + 55459916 55465937 L1PA2 6032 + 2 6028 1630 254 1 0 34 21 22 2739 0 1 1524 0 1 185 0 1 185 0 2 306 2 1 472 0 1 136 5 0 7 0 5 150 chain 38126 chr11 135086622 + 55500601 55501066 LTR15 485 + 13 485 35969 61 0 1 4 0 1 125 0 5 275 chain 57014 chr11 135086622 + 55527819 55528457 L1PA4 6152 + 3721 4359 27261 638 chain 40956 chr11 135086622 + 55534270 55534717 L1PA2 6032 + 5500 5947 33999 447 chain 12419 chr11 135086622 + 55555554 55555954 HERVH48-int 3304 + 2891 3245 66109 4 1 0 20 2 0 8 1 0 14 0 1 30 31 28 43 62 46 58 100 76 26 chain 34855 chr11 135086622 + 55570286 55570793 LTR10C 591 + 0 591 38122 13 1 0 89 4 76 127 0 1 67 0 2 38 1 11 77 28 29 32 5 4 25 chain 531828 chr11 135086622 + 55577164 55583331 L1PA3long 6157 + 6 6149 1760 1048 0 1 1165 0 1 970 1 0 703 34 1 51 0 1 381 0 1 24 0 4 233 0 1 1165 0 1 392 chain 19325 chr11 135086622 + 55617573 55617845 L1PA8 5853 + 5586 5853 57213 22 2 0 70 11 10 52 2 1 19 1 0 93 chain 544477 chr11 135086622 + 55685640 55691665 L1PA2 6032 + 0 6025 1057 6025 chain 83883 chr11 135086622 + 55699660 55700595 L1PA3long 6157 + 5218 6157 20831 654 0 3 29 0 1 252 chain 455929 chr11 135086622 + 55747450 55752735 L1PA4 6152 + 11 5351 4238 145 10 17 854 0 1 144 0 1 423 0 35 1951 0 1 120 0 7 185 4 8 132 4 3 1313 chain 10085 chr11 135086622 + 55763669 55763789 L1PA4 6152 + 1272 1392 70225 120 chain 35934 chr11 135086622 + 55770050 55770490 L1PA7 6471 + 4713 5153 37452 238 1 0 63 0 1 138 chain 26632 chr11 135086622 + 55804135 55804415 AluYb8 318 + 38 318 46791 280 chain 12441 chr11 135086622 + 55833206 55833467 L1PB1 5432 + 5167 5404 66077 45 2 1 6 1 0 18 1 0 44 1 0 15 3 0 6 52 39 5 2 0 24 1 0 21 1 0 13 chain 37155 chr11 135086622 + 55834228 55834659 LTR3 431 + 0 431 36642 431 chain 162959 chr11 135086622 + 55857713 55860113 MER61-int 3695 + 1 2223 11547 29 4 0 4 1 0 12 1 0 152 39 0 74 1 0 7 0 1 44 12 8 79 20 6 74 0 1 115 118 0 520 0 5 12 1 5 6 4 0 130 6 0 155 15 17 9 2 3 71 4 1 101 0 4 139 7 8 339 1 0 24 2 0 20 0 1 46 chain 2487 chr11 135086622 + 55920151 55920180 MER52A 1651 + 890 919 103699 29 chain 520769 chr11 135086622 + 55986261 55992017 L1PA2 6032 + 242 6031 2234 15 1 0 751 0 8 1511 0 10 25 1 0 839 0 1 1342 0 1 776 0 17 351 7 0 120 4 9 13 chain 24165 chr11 135086622 + 55996540 55996874 THE1C 375 + 0 330 50552 129 3 1 52 17 15 133 chain 6876 chr11 135086622 + 56031808 56031902 MER85 139 + 15 136 78049 23 0 17 36 0 10 35 chain 310587 chr11 135086622 + 56032827 56036953 L1P3 4156 + 0 4139 6601 251 2 0 68 2 1 85 1 2 575 0 1 152 0 11 82 0 10 37 13 21 85 3 4 85 25 12 104 10 11 443 9 1 178 0 1 126 21 23 148 0 2 53 0 1 56 35 10 38 0 1 29 0 1 185 0 3 197 0 4 329 2 3 416 0 12 70 2 0 5 0 2 104 0 1 17 0 1 55 2 1 26 chain 412400 chr11 135086622 + 56039788 56045288 HERVL-int 5654 + 0 5523 4999 93 5 6 114 11 6 281 5 6 88 0 1 44 11 13 25 0 1 4 1 0 35 1 8 100 8 9 5 1 0 207 8 9 71 3 2 315 0 1 243 10 8 5 0 2 367 0 5 108 4 9 62 2 0 184 0 1 92 0 1 88 0 1 308 0 12 23 15 16 179 0 1 17 0 1 361 15 12 56 0 1 129 13 14 368 0 1 62 0 10 222 0 7 616 3 0 5 8 11 173 38 8 175 0 1 25 0 1 88 chain 16659 chr11 135086622 + 56046836 56047051 L1PA7 6471 + 6261 6465 60200 193 11 0 11 chain 81888 chr11 135086622 + 56057660 56058622 LTR5_Hs 974 + 4 974 21270 43 0 3 94 8 9 305 0 4 449 1 0 50 1 2 11 chain 68080 chr11 135086622 + 56058622 56059885 L1PA7 6471 + 5622 6470 24435 46 0 2 30 0 2 564 418 0 200 1 0 4 chain 117515 chr11 135086622 + 56101140 56102498 L1PA5 6144 + 4783 6144 15972 511 1 0 137 0 3 376 1 2 169 6 6 157 chain 94176 chr11 135086622 + 56143521 56144560 SVA_D 2077 + 450 2064 19020 237 0 40 151 0 535 651 chain 42311 chr11 135086622 + 56152364 56152839 HERV-Fc1_LTR3 475 + 0 475 33183 475 chain 15057 chr11 135086622 + 56162708 56162897 L1PA7 6471 + 6270 6467 62195 19 0 7 19 0 1 151 chain 33928 chr11 135086622 + 56219005 56219405 L1PA7 6471 + 2832 3242 38768 232 0 10 168 chain 526236 chr11 135086622 + 56219465 56225626 L1PA4 6152 + 0 6151 1988 125 17 3 14 17 31 408 0 3 6 4 1 443 7 6 13 1 3 442 8 12 399 1 0 1249 0 11 13 13 0 1151 9 17 434 22 0 341 0 1 607 0 1 417 chain 41895 chr11 135086622 + 56257015 56257521 L1PA7 6471 + 5951 6457 33423 186 1 0 283 3 4 33 chain 38649 chr11 135086622 + 56266812 56267333 L1PA11 4918 + 3821 4357 35607 231 0 17 8 5 6 148 0 1 38 0 1 43 0 1 5 1 0 8 5 0 29 chain 81552 chr11 135086622 + 56277105 56278112 LTR13 1007 + 0 1007 21326 73 2 0 308 4 5 242 2 1 65 1 4 277 2 1 31 chain 169432 chr11 135086622 + 56278929 56281506 MER57-int 2662 + 126 2624 11133 58 0 1 48 5 7 71 2 0 70 4 0 4 4 0 367 0 1 66 2 0 265 12 7 173 3 0 80 1 0 60 3 0 251 16 20 27 2 0 139 17 0 64 9 5 6 0 12 44 0 4 92 2 8 212 1 0 4 38 42 90 24 18 51 1 0 11 107 55 24 1 0 6 18 13 22 chain 12122 chr11 135086622 + 56282092 56282396 MER4B 649 + 0 366 66624 21 20 9 17 1 0 7 85 116 23 5 28 30 0 5 88 0 15 7 chain 18252 chr11 135086622 + 56285201 56285613 L1PB1 5432 + 5062 5422 58408 28 39 18 6 1 0 24 1 0 9 1 0 6 12 8 7 2 0 52 2 1 15 1 0 39 6 5 16 25 13 18 1 0 5 1 0 12 2 0 26 1 0 14 8 7 13 1 0 18 chain 21973 chr11 135086622 + 56428083 56428341 L1PA5 6144 + 5887 6144 53874 113 1 0 144 chain 92615 chr11 135086622 + 56428542 56429810 HSMAR1 1287 + 1 1284 19255 123 2 1 76 9 8 106 14 16 176 0 1 49 5 3 28 9 17 49 16 21 358 0 3 248 chain 3280 chr11 135086622 + 56458125 56458167 L1PA16 3655 + 1875 1917 97184 42 chain 122246 chr11 135086622 + 56496531 56498112 SVA_B 1603 + 7 1601 15153 15 3 1 19 18 5 160 0 7 217 0 116 293 80 0 12 1 0 12 1 0 15 4 0 42 4 0 37 8 4 14 1 0 10 10 5 6 0 5 599 chain 1866 chr11 135086622 + 56497256 56497287 SVA_B 1603 + 800 831 70067 31 chain 60204 chr11 135086622 + 56508726 56509482 L1PA7 6471 + 3751 4508 26319 485 14 11 224 9 13 24 chain 13833 chr11 135086622 + 56620810 56621013 L1PA7 6471 + 6264 6466 63823 34 15 7 11 0 8 134 1 0 8 chain 23431 chr11 135086622 + 56649723 56650069 L1PA8 5853 + 5502 5853 51707 24 0 8 28 1 0 38 6 8 71 1 0 15 2 1 45 2 1 16 5 4 92 chain 48204 chr11 135086622 + 56685772 56686559 L1PB1 5432 + 4680 5414 30215 114 0 8 20 11 12 262 42 10 8 1 0 20 1 0 10 1 0 12 2 0 3 2 0 9 2 0 52 2 1 15 1 0 43 2 1 11 31 21 15 2 0 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 10 chain 69449 chr11 135086622 + 56717388 56718142 L1PA3long 6157 + 5404 6157 24133 32 1 0 721 chain 86034 chr11 135086622 + 56718657 56719681 LTR5B 1012 + 0 1012 20431 150 14 0 282 0 1 409 1 0 161 0 2 7 chain 3363 chr11 135086622 + 56721923 56721963 MLT2B3 573 + 533 573 96444 40 chain 47055 chr11 135086622 + 56760270 56760781 L1PA2 6032 + 5519 6030 30632 511 chain 18548 chr11 135086622 + 56782500 56782729 L1P3 4156 + 3 232 58048 229 chain 16751 chr11 135086622 + 56795544 56795882 L1PB1 5432 + 5114 5416 60091 24 1 0 5 4 3 12 5 1 8 2 0 53 3 1 15 1 0 39 6 5 16 3 0 6 17 6 19 3 1 4 1 0 14 2 0 23 3 0 22 1 0 13 1 0 12 chain 3895 chr11 135086622 + 56811038 56811082 U2 167 + 7 51 92167 44 chain 39391 chr11 135086622 + 56817655 56818203 LTR19B 566 + 0 566 35088 83 0 1 6 1 0 28 1 0 98 1 0 6 0 15 213 7 6 40 2 4 9 4 8 49 chain 71280 chr11 135086622 + 56821127 56821904 L1PA4 6152 + 5374 6151 23704 777 chain 21313 chr11 135086622 + 56845779 56846328 LTR12C 1709 + 932 1648 54750 177 0 47 39 212 303 38 5 4 26 29 59 23 chain 147166 chr11 135086622 + 56869750 56872134 MER4-int 2692 + 650 2692 12533 64 6 4 138 3 0 63 0 1 280 0 5 83 0 1 21 1 0 9 7 7 86 1 0 12 1 0 53 329 1 20 16 10 125 3 5 226 0 1 143 3 0 271 19 3 101 0 3 15 0 7 69 1 0 1 2 0 28 0 11 7 19 9 147 0 1 11 chain 105213 chr11 135086622 + 56912505 56914182 L1PA2 6032 + 4363 6032 17658 329 15 0 1192 0 7 141 chain 197819 chr11 135086622 + 56919248 56921750 L1PA7 6471 + 3967 6467 9784 155 4 16 72 0 2 193 0 6 37 1 0 18 0 4 10 0 6 482 0 12 88 19 6 294 25 0 253 1 0 89 8 6 77 1 0 6 0 1 498 1 0 5 7 8 148 2 0 8 chain 7552 chr11 135086622 + 56938056 56938139 L1P1 4361 + 3124 3207 75987 83 chain 26263 chr11 135086622 + 56953080 56953365 AluYb8 318 + 6 288 47330 117 3 0 165 chain 176446 chr11 135086622 + 56964391 56966326 L1PA2 6032 + 4094 6029 10753 1935 chain 112778 chr11 135086622 + 57045820 57047266 L1PA7 6471 + 4998 6455 16709 42 19 2 16 4 0 138 0 1 287 0 17 92 6 10 18 2 0 88 0 1 47 0 1 67 0 1 17 7 10 405 0 1 137 4 10 31 1 0 18 chain 8379 chr11 135086622 + 57058410 57058512 MER54B 801 + 639 741 73949 102 chain 531691 chr11 135086622 + 57062759 57068908 L1PA5 6144 + 0 6132 1765 710 2 1 65 6 5 251 0 1 716 0 1 8 23 8 138 0 2 287 0 2 1571 5 0 708 5 0 823 1 5 830 chain 21487 chr11 135086622 + 57112604 57112928 Tigger2 2703 + 2286 2623 54529 51 7 13 16 7 10 68 0 2 122 16 18 37 chain 27897 chr11 135086622 + 57115359 57115738 THE1C 375 + 0 375 45045 125 3 0 56 0 1 8 10 8 177 chain 7426 chr11 135086622 + 57120977 57121089 MER21C 908 + 1 207 76324 33 13 107 66 chain 3002 chr11 135086622 + 57210414 57210449 MER3 215 - 126 161 99814 35 chain 7633 chr11 135086622 + 57211547 57211637 Tigger2 2703 + 2289 2380 75793 82 0 1 8 chain 15804 chr11 135086622 + 57218428 57218767 L1PB1 5432 + 5114 5422 61282 20 1 0 8 3 2 14 16 10 52 2 1 15 1 0 44 1 0 16 1 0 6 16 6 18 23 18 26 1 0 15 7 6 13 1 0 14 1 0 4 chain 31227 chr11 135086622 + 57226129 57226564 L1P5 443 + 3 437 40946 4 1 0 46 1 0 79 12 13 292 chain 14908 chr11 135086622 + 57226777 57227125 L1PB1 5432 + 5114 5427 62380 22 2 0 10 1 0 10 23 17 45 1 0 19 1 0 37 37 23 30 7 4 14 3 1 24 1 0 21 6 5 8 1 0 18 2 0 5 chain 34868 chr11 135086622 + 57247838 57248282 L1PA8 5853 + 5410 5847 38112 152 1 0 46 2 0 70 2 1 7 1 0 50 8 7 17 1 0 87 chain 23243 chr11 135086622 + 57262308 57263025 MER51B 395 + 44 395 52012 15 8 11 69 366 0 48 1 0 42 6 5 19 5 4 138 chain 29240 chr11 135086622 + 57266741 57267237 MER57-int 2662 + 40 775 42981 30 45 29 9 1 0 34 1 0 15 17 20 48 0 243 19 7 17 211 10 11 49 chain 29589 chr11 135086622 + 57267836 57268218 MER51B 395 + 9 388 42497 177 1 0 42 2 1 154 1 0 5 chain 5080 chr11 135086622 + 57281687 57281748 MSTB 430 + 91 152 85246 61 chain 22399 chr11 135086622 + 57337455 57337727 L1PA5 6144 + 5770 6040 53276 201 2 0 69 chain 7615 chr11 135086622 + 57337738 57337833 L1PA5 6144 + 6040 6135 75835 95 chain 27928 chr11 135086622 + 57410704 57411062 THE1A 353 + 0 353 44986 88 4 1 21 1 0 92 1 0 151 chain 10607 chr11 135086622 + 57444276 57444404 MER57F 435 + 142 270 69219 128 chain 3859 chr11 135086622 + 57481041 57481088 MIRb 242 + 60 105 92413 5 2 0 40 chain 3635 chr11 135086622 + 57495147 57495187 MADE1 96 + 49 89 94138 40 chain 18815 chr11 135086622 + 57519524 57519789 L1PA8A 6298 + 6030 6290 57761 120 0 2 22 15 1 10 1 8 97 chain 41484 chr11 135086622 + 57563939 57564520 L1M1 2793 + 1284 1855 33682 229 12 11 75 0 1 54 9 2 144 2 1 19 12 10 25 chain 23230 chr11 135086622 + 57564964 57565237 AluSp 311 + 0 277 52036 19 0 4 254 chain 3842 chr11 135086622 + 57586499 57586542 THE1D-int 1627 + 1013 1056 92554 43 chain 63089 chr11 135086622 + 57587172 57588038 THE1D-int 1627 + 806 1615 25605 142 0 1 88 2 3 287 0 1 186 53 0 6 6 0 53 6 5 37 chain 65698 chr11 135086622 + 57650628 57651452 HERVL-int 5654 + 4822 5654 25032 174 0 12 56 0 2 159 8 7 98 2 1 104 4 0 219 chain 52101 chr11 135086622 + 57727445 57728169 MER4E 760 + 0 748 28846 17 1 0 93 11 7 34 22 25 110 1 5 78 0 2 8 0 4 139 0 9 86 1 8 123 chain 13622 chr11 135086622 + 57731484 57731650 MER4E 760 + 590 760 64135 43 0 4 123 chain 526521 chr11 135086622 + 57847857 57853990 L1PA6 6164 + 0 6160 1976 398 6 5 393 1 18 640 13 13 866 0 1 337 3 4 855 2 1 1112 0 1 106 0 1 7 0 1 41 1 0 284 0 1 172 0 3 571 0 1 254 0 3 71 chain 21055 chr11 135086622 + 57860344 57860695 L1MA5A 2387 + 1977 2296 55056 51 0 1 4 1 0 36 2 1 38 1 0 50 2 0 23 1 0 38 3 0 13 33 9 55 chain 15645 chr11 135086622 + 57884664 57884890 THE1D 372 + 146 372 61476 32 0 20 9 19 1 17 1 0 79 1 0 68 chain 22901 chr11 135086622 + 57898457 57898819 THE1D 372 + 0 372 52511 101 8 7 49 34 40 113 1 3 20 4 7 32 chain 17079 chr11 135086622 + 57922916 57923110 L1PA5 6144 + 5938 6132 59724 194 chain 9978 chr11 135086622 + 57970735 57970928 THE1B 368 + 152 342 70467 25 22 18 5 1 0 10 0 4 10 22 20 98 chain 268472 chr11 135086622 + 58048699 58051607 L1PA2 6032 + 3115 6028 7749 16 0 4 2481 0 5 400 4 0 7 chain 52031 chr11 135086622 + 58051631 58052196 L1PA2 6032 + 5051 5616 28867 565 chain 37443 chr11 135086622 + 58052196 58052596 L1PA2 6032 + 5621 6021 36445 400 chain 87961 chr11 135086622 + 58052631 58053611 L1PA3long 6157 + 5179 6157 20055 523 1 2 448 3 0 5 chain 67843 chr11 135086622 + 58081980 58082741 L1PA3long 6157 + 5365 6142 24485 303 0 16 458 chain 23210 chr11 135086622 + 58084743 58085044 L1P4 1494 + 91 390 52067 33 2 1 20 1 0 245 chain 7699 chr11 135086622 + 58161054 58161157 L1PA6 6164 + 5965 6068 75629 32 1 0 6 1 2 63 chain 8228 chr11 135086622 + 58161157 58161250 L1PA6 6164 + 6069 6162 74328 93 chain 5710 chr11 135086622 + 58215938 58216161 L1MA4 2864 + 2659 2834 82288 16 3 0 6 72 43 14 12 6 23 2 0 42 16 8 17 chain 3384 chr11 135086622 + 58245477 58245513 MER1A 529 + 407 443 96248 36 chain 211363 chr11 135086622 + 58370897 58373234 L1PA3long 6157 + 3819 6157 9308 1342 0 1 995 chain 44819 chr11 135086622 + 58374223 58374782 L1PA7 6471 + 5896 6470 31688 50 0 15 345 9 10 150 1 0 4 chain 165280 chr11 135086622 + 58413685 58415534 L1PA5 6144 + 3523 5377 11394 677 0 1 1096 0 4 76 chain 39841 chr11 135086622 + 58418367 58418858 MER9a1 513 + 0 513 34781 244 1 23 246 chain 189296 chr11 135086622 + 58445800 58448480 L1PBa1 4058 + 10 2704 10151 18 9 8 10 14 11 156 0 1 23 1 0 167 5 6 21 3 1 135 1 0 5 0 1 45 43 41 70 0 9 8 9 0 56 10 9 81 0 1 35 0 6 29 0 4 7 8 4 126 1 0 16 25 5 305 24 23 57 0 1 172 6 5 62 0 2 461 0 3 80 0 4 92 1 14 61 0 1 67 0 33 75 19 0 61 chain 5413 chr11 135086622 + 58452170 58452340 L1PB1 5432 + 5269 5418 83640 12 4 3 12 3 0 7 15 6 11 19 16 12 1 0 22 1 0 21 1 0 5 1 0 8 2 1 13 chain 16469 chr11 135086622 + 58454405 58454580 L1PA3long 6157 + 5982 6157 60415 175 chain 51448 chr11 135086622 + 58457555 58458175 L1PA7 6471 + 5852 6470 29068 242 4 1 218 0 1 156 chain 33837 chr11 135086622 + 58460593 58460976 L1PA5 6144 + 5759 6142 38822 383 chain 26317 chr11 135086622 + 58467814 58468093 AluYa5 310 + 27 306 47245 279 chain 77660 chr11 135086622 + 58473253 58474314 MER11C 1089 + 0 1073 22169 246 0 9 62 0 4 65 1 0 146 78 72 86 1 5 39 9 10 121 0 1 54 1 0 144 0 1 8 chain 36005 chr11 135086622 + 58496909 58497579 L1PA15 4387 + 3699 4356 37415 14 17 19 73 5 7 23 5 0 24 7 11 20 3 5 15 1 2 20 1 0 168 6 5 26 4 3 50 8 7 13 4 0 13 1 0 50 6 3 29 37 30 27 chain 521813 chr11 135086622 + 58529738 58537661 L1PA7 6471 + 0 6461 2192 410 28 17 354 4 1 615 0 3 111 4 0 509 1467 0 143 0 4 223 15 14 782 0 1 199 0 1 95 0 1 122 0 2 125 0 1 103 6 5 115 1 0 251 0 2 462 0 8 17 3 4 15 3 5 406 0 1 496 0 1 79 3 0 603 9 10 145 chain 117572 chr11 135086622 + 58540893 58542200 L1PA3long 6157 + 4849 6157 15961 47 0 1 1260 chain 285302 chr11 135086622 + 58680860 58684335 L1PA7 6471 + 2563 6143 7277 76 2 0 26 0 1 13 1 2 1009 1 0 306 8 47 807 0 4 296 3 5 26 0 1 167 7 0 272 1 0 17 1 2 311 1 68 124 chain 26485 chr11 135086622 + 58684335 58684647 L1PA7 6471 + 6156 6468 46999 312 chain 16733 chr11 135086622 + 58706070 58706325 L1PA17 2846 + 27 282 60120 5 1 0 30 0 1 22 23 24 41 1 0 132 chain 43351 chr11 135086622 + 58710924 58711491 LTR10C 591 + 20 591 32537 12 2 0 96 4 3 119 10 11 199 0 4 46 0 2 79 chain 5505 chr11 135086622 + 58722016 58722087 LTR10C 591 + 0 71 83214 34 2 0 30 0 2 5 chain 5613 chr11 135086622 + 58743755 58743827 MER61C 433 + 362 433 82744 61 1 0 10 chain 501371 chr11 135086622 + 58749640 58755990 L1PA6 6164 + 0 6162 3085 302 0 8 144 0 4 334 17 0 15 0 17 165 3 0 492 0 1 20 0 1 588 5 6 116 0 2 239 246 32 488 0 2 91 0 1 51 1 2 147 0 6 255 4 5 670 0 1 444 8 7 156 0 1 1349 chain 17925 chr11 135086622 + 58763442 58763686 THE1B-int 1605 + 1346 1605 58726 19 7 24 59 2 0 157 chain 10006 chr11 135086622 + 58763688 58763860 THE1B 368 + 2 175 70415 74 16 16 19 12 13 51 chain 3422 chr11 135086622 + 58765713 58765752 MLT1A0 366 + 327 366 95893 39 chain 18072 chr11 135086622 + 58766003 58766277 L1PB2 3958 + 3568 3838 58590 50 1 0 63 2 1 63 1 2 6 2 0 22 12 11 52 chain 39465 chr11 135086622 + 58770116 58770596 HERV1_LTRc 486 + 0 479 35029 94 1 0 385 chain 39181 chr11 135086622 + 58776849 58777326 HERV1_LTRc 486 + 0 478 35226 90 1 2 386 chain 26609 chr11 135086622 + 58787268 58787657 MLT2A1 477 + 5 384 46818 111 9 0 53 10 9 13 1 0 4 0 1 114 4 3 51 0 1 19 chain 27200 chr11 135086622 + 58810781 58811202 MER4A1 472 + 23 472 45967 6 1 0 165 35 58 124 30 36 60 chain 517540 chr11 135086622 + 58815985 58822090 L1PA5 6144 + 0 6135 2397 82 1 0 38 0 14 594 0 1 79 0 2 625 3 1 6 0 2 184 0 1 865 7 4 160 0 1 203 0 1 301 1 0 94 1 2 25 0 4 879 0 1 367 6 4 21 0 6 211 0 1 512 0 3 516 6 7 318 chain 171916 chr11 135086622 + 58825506 58828297 MER4-int 2692 + 164 2692 11002 15 0 1 7 0 1 126 0 14 172 0 7 106 0 4 17 2 0 86 2 0 56 4 17 53 14 16 119 1 0 4 0 2 133 12 16 176 1 0 9 7 5 76 17 47 28 31 31 156 1 0 114 10 9 94 2 0 5 2 6 53 1 0 68 0 1 78 2 0 165 0 2 11 329 0 55 1 0 4 1 2 164 12 0 7 3 11 179 chain 32615 chr11 135086622 + 58828305 58828760 MER4A1 472 + 0 455 39850 13 1 3 5 0 1 11 1 0 192 16 17 60 3 0 153 chain 9480 chr11 135086622 + 58849667 58849773 L1PA7 6471 + 6191 6297 71522 106 chain 11359 chr11 135086622 + 58849800 58849943 L1PA7 6471 + 6324 6467 67991 143 chain 106249 chr11 135086622 + 58883251 58884510 L1PA6 6164 + 3185 4451 17534 205 0 1 614 0 3 265 0 3 175 chain 38408 chr11 135086622 + 58966065 58966573 MER9a3 513 + 8 513 35781 5 0 2 96 0 1 144 1 0 60 7 0 105 0 1 12 4 5 74 chain 402737 chr11 135086622 + 58972269 58977037 L1PA5 6144 + 0 6134 5121 84 1 0 11 11 4 379 0 17 310 0 1 1256 0 1 178 0 4 22 0 1351 311 0 1 728 4 1 97 0 1 288 0 1 1088 chain 76974 chr11 135086622 + 59004728 59005716 LTR5B 1012 + 0 1003 22324 128 1 14 215 0 1 87 15 17 27 1 0 514 chain 510131 chr11 135086622 + 59015244 59020945 L1PA3long 6157 + 6 5721 2764 1039 0 2 69 0 1 3047 0 9 1515 0 2 31 chain 76970 chr11 135086622 + 59136290 59137263 LTR5B 1012 + 0 998 22326 51 0 1 82 0 14 128 0 7 147 7 8 51 1 0 29 0 1 229 0 2 105 22 22 121 chain 29748 chr11 135086622 + 59232706 59233248 LOR1-int 1871 + 90 643 42309 74 1 0 4 57 70 17 6 0 32 1 0 8 4 8 57 4 0 29 11 12 181 5 8 6 0 4 6 4 0 7 0 2 28 chain 270166 chr11 135086622 + 59234294 59238302 L1PA10 4194 + 175 4161 7704 12 2 0 14 31 22 9 2 0 7 86 74 19 24 21 10 31 21 10 4 0 9 1 0 6 0 1 62 20 18 44 32 39 96 3 8 76 9 0 215 8 0 33 3 26 161 9 12 46 0 1 24 0 3 170 9 3 7 0 4 79 2 1 446 0 1 87 0 1 239 1 4 260 4 5 8 0 1 39 6 7 27 7 6 36 0 5 13 11 13 27 0 1 53 1 0 12 1 2 123 1 0 9 30 22 536 0 1 556 3 0 34 7 4 34 1 0 11 chain 451486 chr11 135086622 + 59276302 59282226 HERVL-int 5654 + 17 5654 4349 635 1 0 25 0 1 4 1 0 54 1 7 38 0 1 301 0 1 86 8 18 118 0 1 392 12 10 202 6 3 292 0 1 421 0 1 222 324 0 428 0 1 19 0 2 343 1 0 6 4 14 69 0 5 336 1 3 208 6 0 421 0 8 83 5 6 293 6 5 491 0 1 61 chain 25664 chr11 135086622 + 59282226 59282580 MLT2A1 477 + 0 371 48225 101 1 0 71 21 38 100 0 1 60 chain 49731 chr11 135086622 + 59312251 59312838 L1PA6 6164 + 5558 6152 29667 409 0 7 178 chain 127025 chr11 135086622 + 59375452 59376849 L1PA3long 6157 + 4759 6157 14417 1369 0 1 28 chain 221123 chr11 135086622 + 59405564 59408040 L1PA3long 6157 + 3689 6157 9009 776 9 0 841 0 1 850 chain 127405 chr11 135086622 + 59408043 59409950 MER57-int 2662 + 762 2643 14372 53 2 0 281 4 0 93 0 1 102 1 2 48 41 43 139 0 6 16 1 0 50 5 9 101 1 0 135 17 0 16 0 2 49 3 0 56 4 10 176 0 10 132 0 1 39 1 0 92 18 12 46 2 0 6 84 71 24 1 0 6 15 10 24 3 0 20 chain 21985 chr11 135086622 + 59442175 59442458 AluSp 311 + 11 298 53857 51 10 14 222 chain 216340 chr11 135086622 + 59463784 59467013 L1PB1 5432 + 2525 5424 9141 222 0 1 40 6 0 328 0 1 125 9 8 40 12 11 306 0 1 121 1 3 301 1 0 131 1 5 261 2 1 4 0 1 185 3 0 174 0 1 250 0 1 5 1 0 51 309 11 24 1 0 9 43 36 37 2 1 16 2 1 42 1 0 16 1 0 4 17 8 19 9 6 13 3 1 23 1 0 21 1 0 13 1 0 16 1 0 4 chain 69287 chr11 135086622 + 59493458 59494222 L1PA3long 6157 + 5391 6157 24162 759 0 2 5 chain 23906 chr11 135086622 + 59516199 59516513 AluSp 311 + 0 309 50931 131 17 12 166 chain 21795 chr11 135086622 + 59520381 59520620 L1PA3long 6157 + 5918 6157 54103 239 chain 3547 chr11 135086622 + 59551293 59551330 tRNA-Arg-AGA 37 + 0 37 94879 37 chain 5888 chr11 135086622 + 59551765 59551837 tRNA-Leu-TTA 75 + 3 75 81532 72 chain 6759 chr11 135086622 + 59556428 59556501 tRNA-Lys-AAA 73 + 0 73 78449 73 chain 22012 chr11 135086622 + 59567311 59567569 AluSp 311 + 36 294 53816 258 chain 110018 chr11 135086622 + 59584936 59586169 SVA_D 2077 + 335 2065 17079 453 1 3 99 0 396 20 0 49 8 0 50 24 1 0 347 0 1 280 chain 28899 chr11 135086622 + 59631333 59631648 AluYb9 318 + 1 315 43477 199 1 0 115 chain 135531 chr11 135086622 + 59699054 59700545 SVA_D 2077 + 42 2063 13486 722 0 1 66 0 40 45 1 490 657 chain 32885 chr11 135086622 + 59706909 59707327 LTR3 431 + 4 422 39597 259 1 0 38 6 7 114 chain 23849 chr11 135086622 + 59723981 59724314 L1PB2 3958 + 3225 3544 51023 82 2 0 56 1 0 11 5 0 58 8 6 13 4 0 93 chain 50801 chr11 135086622 + 59732658 59733608 PABL_A 660 + 0 658 29282 127 1 0 151 0 1 150 295 0 79 0 2 42 8 9 27 1 0 4 0 1 65 chain 37176 chr11 135086622 + 59903713 59904156 L1PA5 6144 + 5704 6143 36630 235 3 0 35 11 10 159 chain 38733 chr11 135086622 + 59923582 59924058 MER9a1 513 + 14 513 35537 230 1 23 53 0 1 192 chain 309176 chr11 135086622 + 59925360 59929266 HERVK9-int 4720 + 37 4720 6630 12 8 5 5 1 0 99 6 5 50 4 5 307 0 1 5 1 0 234 4 5 490 1 0 193 0 1 517 2 0 129 4 0 187 3 6 358 74 813 230 1 2 44 0 1 93 4 3 15 0 48 140 8 7 397 3 0 93 1 0 183 chain 38644 chr11 135086622 + 59929284 59929756 MER9a1 513 + 18 513 35611 226 1 23 35 1 2 209 chain 23688 chr11 135086622 + 59965021 59965297 L1PA4 6152 + 5867 6141 51292 6 0 4 120 6 0 144 chain 14778 chr11 135086622 + 60010998 60011181 Tigger3c 601 + 325 518 62559 35 1 11 147 chain 135406 chr11 135086622 + 60012057 60013653 L1PA4 6152 + 4582 6152 13498 56 0 5 651 0 1 523 2 1 207 45 8 102 0 6 10 chain 79620 chr11 135086622 + 60050988 60051852 L1PA3long 6157 + 5288 6157 21714 19 0 1 4 0 4 841 chain 15131 chr11 135086622 + 60063737 60064004 L1PB1 5432 + 5176 5420 62124 44 2 1 16 1 0 43 1 0 16 3 0 6 15 6 19 8 5 14 2 0 24 1 0 23 1 0 11 1 0 16 chain 30700 chr11 135086622 + 60121799 60122258 Charlie3 2679 + 2217 2671 41387 261 4 6 58 8 2 15 0 1 22 36 34 55 chain 66645 chr11 135086622 + 60129091 60129848 L1PA5 6144 + 5387 6144 24786 757 chain 101086 chr11 135086622 + 60154562 60155654 L1PA3long 6157 + 3478 4570 18175 1092 chain 38149 chr11 135086622 + 60185445 60185905 LTR2 463 + 0 463 35947 126 1 4 333 chain 424178 chr11 135086622 + 60187660 60192735 Harlequin-int 5206 + 125 5205 4825 10 2 1 152 0 1 17 1 0 167 6 5 204 1 0 135 0 3 24 0 1 26 1 0 220 22 19 89 0 2 669 0 4 978 0 1 95 0 1 739 5 2 214 0 1 354 0 2 944 chain 36963 chr11 135086622 + 60192736 60193188 LTR2 463 + 0 461 36763 38 0 1 90 0 3 89 0 5 235 chain 15055 chr11 135086622 + 60216679 60216960 MLT2A2 560 + 0 555 62197 114 6 0 6 13 35 28 1 0 10 36 295 11 1 0 6 0 1 49 chain 37793 chr11 135086622 + 60217060 60217544 HERVL-int 5654 + 295 779 36212 5 0 2 339 10 8 130 chain 35728 chr11 135086622 + 60321976 60322440 L1PA10 4194 + 3699 4161 37582 59 0 1 345 2 3 9 3 0 34 1 0 11 chain 43930 chr11 135086622 + 60323016 60323551 L1PA7 6471 + 5878 6465 32177 72 0 1 143 1 0 70 0 3 67 1 50 181 chain 50926 chr11 135086622 + 60367664 60368389 LTR17 781 + 0 757 29231 58 1 0 98 6 5 18 1 0 101 0 1 43 4 3 21 25 26 108 1 13 209 7 29 24 chain 550232 chr11 135086622 + 60435417 60441441 L1PA2 6032 + 0 6032 726 257 1 0 393 0 7 379 1 4 4841 1 0 151 chain 19472 chr11 135086622 + 60442361 60442653 L1PA8 5853 + 5564 5853 57067 45 2 0 70 2 1 7 0 6 7 8 0 40 2 1 19 2 1 45 0 4 43 chain 19195 chr11 135086622 + 60449255 60449638 L1PA15 4387 + 3999 4366 57354 21 8 13 57 4 2 12 2 1 15 20 19 46 1 0 12 0 2 5 6 0 13 1 0 50 6 3 46 2 0 11 10 5 25 1 0 9 chain 152079 chr11 135086622 + 60450727 60452415 SVA_F 1814 + 14 1812 12221 591 0 1 95 0 40 106 0 3 5 0 50 43 0 15 31 0 1 460 0 3 339 3 0 15 chain 294093 chr11 135086622 + 60472455 60475694 L1PA3long 6157 + 2665 5909 7007 125 0 2 200 0 2 43 0 1 2871 chain 3180 chr11 135086622 + 60476022 60476057 MER57B1 401 + 2 37 98108 35 chain 132557 chr11 135086622 + 60490889 60492415 SVA_C 1631 + 0 1623 13775 17 2 0 5 0 3 6 6 0 131 0 22 672 4 0 9 1 0 45 2 0 33 0 87 593 chain 136583 chr11 135086622 + 60509613 60511185 SVA_B 1603 + 4 1603 13379 17 9 34 7 0 2 856 0 1 55 1 0 32 1 0 83 0 1 511 chain 11078 chr11 135086622 + 60520061 60520251 THE1B 368 + 0 180 68446 19 2 0 20 1 6 59 22 11 55 2 0 10 chain 558453 chr11 135086622 + 60532161 60538190 L1PA2 6032 + 3 6032 227 6029 chain 39463 chr11 135086622 + 60547596 60548022 L1PA3long 6157 + 5380 5806 35032 426 chain 32207 chr11 135086622 + 60548022 60548373 L1PA3long 6157 + 5807 6157 40181 333 1 0 17 chain 498982 chr11 135086622 + 60550393 60556510 L1PA6 6164 + 0 6162 3162 201 0 1 81 69 72 57 1 0 97 2 1 115 30 30 62 4 13 19 0 1 28 0 1 163 0 6 231 0 3 6 12 11 138 15 36 415 6 8 417 0 2 110 0 2 73 0 4 37 0 3 695 0 1 4 5 7 196 21 0 129 0 3 5 4 1 410 1 0 473 0 4 204 0 1 131 1 2 393 0 1 671 1 3 384 chain 58848 chr11 135086622 + 60564419 60565147 LTR12 884 + 0 869 26722 25 1 0 74 0 4 78 0 25 59 0 113 491 chain 5250 chr11 135086622 + 60570925 60571140 L1MB4 1306 + 619 837 84445 55 130 134 4 1 0 25 chain 290400 chr11 135086622 + 60580041 60583985 L1PB1 5432 + 1502 5423 7117 342 0 4 16 0 1 119 1 0 143 0 1 140 0 3 217 16 14 84 0 1 4 2 4 93 1 2 135 0 1 16 3 1 155 1 0 336 0 2 398 13 15 72 13 15 15 4 3 108 1 0 30 16 7 75 5 14 85 7 7 163 0 11 8 1 0 163 12 0 101 3 0 179 1 2 48 0 3 7 2 0 238 13 11 24 10 8 12 5 1 9 2 0 51 1 0 13 5 4 45 1 0 15 2 0 6 15 6 19 2 0 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 19 chain 111328 chr11 135086622 + 60585047 60586796 L1MA1 4479 + 2100 4190 16902 66 4 0 273 0 1 38 7 11 16 7 6 85 13 0 21 0 4 47 1 0 69 20 2 8 0 18 9 2 0 25 8 7 60 1 0 68 0 3 19 3 2 27 2 0 42 0 1 128 3 1 33 1 0 61 1 0 12 5 0 53 11 389 9 1 0 18 9 7 16 6 5 69 0 9 8 2 0 12 2 1 21 0 2 42 0 1 22 9 5 126 1 0 29 2 0 35 1 0 9 1 0 11 20 9 19 chain 75947 chr11 135086622 + 60597319 60598157 L1PA5 6144 + 5306 6144 22596 838 chain 130969 chr11 135086622 + 60602526 60603950 L1PA3long 6157 + 3139 4564 13931 974 0 1 450 chain 172743 chr11 135086622 + 60621342 60623668 SVA_D 2077 + 0 2075 10964 477 1 3 113 40 0 168 0 40 110 10 9 23 6 0 5 83 0 44 0 1 37 42 16 6 1 0 270 49 0 66 74 0 13 4 0 251 26 26 387 10 0 10 chain 2146 chr11 135086622 + 60622295 60622324 SVA_D 2077 + 1092 1121 32388 29 chain 3152 chr11 135086622 + 60622324 60622378 SVA_D 2077 + 732 786 30749 54 chain 3108 chr11 135086622 + 60622459 60622501 SVA_D 2077 + 1257 1299 32388 42 chain 2860 chr11 135086622 + 60622778 60622827 SVA_D 2077 + 968 1017 30749 49 chain 4319 chr11 135086622 + 60622893 60622967 SVA_D 2077 + 1085 1159 30749 74 chain 55540 chr11 135086622 + 60623995 60624835 L1PA13 3608 + 296 1145 27706 119 1 0 13 1 0 10 1 0 4 38 28 12 9 8 10 3 1 14 3 1 10 10 9 96 2 0 256 0 30 228 chain 4241 chr11 135086622 + 60721994 60722103 Charlie1a 1436 + 1326 1432 89872 20 2 0 30 37 36 20 chain 158058 chr11 135086622 + 60814498 60816375 SVA_F 1814 + 0 1813 11873 925 1 0 4 46 33 43 1 0 33 0 1 4 10 37 8 0 1 100 78 0 624 chain 3138 chr11 135086622 + 60815428 60815474 SVA_F 1814 + 1043 1089 54523 46 chain 1842 chr11 135086622 + 60815673 60815700 SVA_F 1814 + 1267 1293 54523 7 1 0 19 chain 3657 chr11 135086622 + 60815700 60815751 SVA_F 1814 + 1040 1091 57705 51 chain 3398 chr11 135086622 + 60822654 60822691 MER5A1 166 + 40 77 96096 37 chain 26775 chr11 135086622 + 60823756 60824299 LTR7B 505 + 0 505 46576 106 1 11 53 19 32 27 27 27 56 98 40 82 21 20 26 2 0 25 chain 4073 chr11 135086622 + 60824055 60824116 LTR7B 505 + 201 284 90933 28 5 27 28 chain 42208 chr11 135086622 + 60864004 60864561 LTR19B 566 + 0 566 33242 107 0 1 318 0 3 61 7 12 12 19 15 23 0 4 10 chain 481904 chr11 135086622 + 60881327 60887216 L1PA5 6144 + 565 6142 3588 284 0 1 319 9 0 54 0 1 1089 2 1 1168 1 5 27 0 1 189 3 2 253 324 0 382 0 11 95 0 3 844 1 0 76 0 2 20 0 3 651 8 9 80 3 0 7 chain 2688 chr11 135086622 + 60892874 60892907 MER34C2 569 + 237 269 102421 6 1 0 26 chain 13140 chr11 135086622 + 60910060 60910227 LTR45 522 + 349 516 64863 41 0 1 15 1 0 110 chain 3431 chr11 135086622 + 60931572 60931615 MIR 256 + 104 147 95804 43 chain 187024 chr11 135086622 + 61084374 61086370 L1HS 6032 + 4036 6032 10252 1996 chain 38710 chr11 135086622 + 61093593 61094050 LTR2 463 + 0 463 35555 226 0 5 131 12 13 88 chain 221350 chr11 135086622 + 61094923 61098363 HERVE_a-int 7009 + 135 6989 8997 19 4 1 30 3 1 73 12 7 24 1 0 4 2 1 6 1 0 9 28 22 5 1 0 7 1 0 5 1 0 6 1 0 5 1 0 18 27 0 34 4 2 25 1 0 43 2 1 21 1 0 53 1 0 35 1 0 98 1 0 12 1 0 15 2 1 34 1 0 13 1 0 48 5 3 27 1 0 67 1 0 26 1 0 8 1 0 72 1 0 35 1 0 38 35 0 15 1 0 31 3 9 12 1 0 21 1 0 15 2 1 5 1 0 12 4 0 15 1 0 11 1 0 16 1 0 22 1 0 4 2 1 7 1 0 10 1 0 4 2 1 9 1 0 52 3 1 57 1 0 23 2 1 15 1 0 115 1 0 19 1 0 20 1 0 12 1 0 13 17 15 4 1 0 20 1 0 41 1 0 40 1 0 60 2 1 35 2 1 7 2 1 32 2 1 44 1 0 22 2 1 17 1 0 24 1 0 12 1 0 94 4 3614 239 3 1 102 1 0 15 1 0 3 1 0 52 7 5 20 1 0 11 1 0 81 2 0 135 2 1 23 3 0 22 1 0 30 2 1 10 1 0 16 1 0 5 2 0 7 1 0 36 1 0 22 1 0 47 1 0 4 1 0 27 7 5 55 2 1 9 4 0 26 3 0 54 3 1 27 6 5 25 1 0 6 3 1 13 1 0 24 2 0 34 4 2 15 32 25 22 chain 35603 chr11 135086622 + 61098391 61098841 LTR2 463 + 0 463 37656 91 4 15 10 0 1 243 14 15 88 chain 15000 chr11 135086622 + 61142803 61142967 L1PA2 6032 + 5869 6032 62270 18 1 0 145 chain 5594 chr11 135086622 + 61180553 61180650 L1MC1 2226 + 1992 2083 82833 52 19 13 26 chain 5233 chr11 135086622 + 61183568 61183677 MER21A 919 + 25 133 84537 47 27 28 27 2 0 6 chain 154096 chr11 135086622 + 61372924 61376933 MER4-int 2692 + 80 2692 12106 6 0 1 12 2 0 9 0 2 8 7 3 196 14 13 229 0 1 21 0 55 82 6 0 27 0 2 37 0 26 81 6 0 28 0 1 98 0 1 18 641 0 215 954 331 153 1 0 46 22 21 87 9 11 127 319 103 63 0 1 75 1 3 11 3 4 7 0 1 61 0 6 15 1 0 117 0 3 194 chain 11007 chr11 135086622 + 61624884 61625027 MER39 703 + 548 685 68547 78 6 0 59 chain 11527 chr11 135086622 + 61633171 61633315 MER1A 529 + 90 234 67704 144 chain 27989 chr11 135086622 + 61659781 61660131 MER41A 554 + 0 372 44887 93 0 1 28 4 7 118 0 18 107 chain 38268 chr11 135086622 + 61668560 61669424 MER41C 542 + 0 542 35863 49 0 1 66 0 1 48 7 5 194 0 3 8 3 0 48 322 1 17 12 11 90 chain 28557 chr11 135086622 + 61806058 61806365 AluYb8 318 + 0 305 44019 217 2 0 88 chain 5521 chr11 135086622 + 61843960 61844045 MER96B 391 + 99 178 83150 7 2 0 5 2 0 24 1 0 37 1 0 6 chain 16877 chr11 135086622 + 61884229 61884469 L1PA8 5853 + 5612 5849 59933 70 11 8 46 8 7 20 1 0 65 0 2 19 chain 24733 chr11 135086622 + 61920645 61920934 AluSp 311 + 4 293 49676 289 chain 8296 chr11 135086622 + 61937893 61937994 U6 107 + 0 101 74169 101 chain 22708 chr11 135086622 + 61942228 61942473 SVA_F 1814 + 1565 1810 52818 245 chain 12044 chr11 135086622 + 61948881 61949078 L1PA8 5853 + 5688 5853 66770 50 5 4 18 1 0 59 32 2 32 chain 276924 chr11 135086622 + 61985911 61990003 L1PA10 4194 + 394 4150 7523 9 1 0 72 2 1 12 2 0 16 1 0 333 0 1 42 1 0 94 1 2 169 10 18 35 0 1 69 0 1 29 1 0 140 4 7 11 2 1 119 0 11 60 0 2 59 0 2 50 44 0 67 13 7 54 10 8 266 1 2 30 5 6 158 8 0 178 0 1 81 366 0 19 0 7 35 0 4 16 0 27 143 1 2 83 0 21 330 0 8 73 27 23 218 9 7 164 0 4 47 0 2 265 3 0 34 chain 24120 chr11 135086622 + 62014070 62014395 MER41B 635 + 10 339 50620 117 1 2 83 4 5 48 0 1 20 0 1 52 chain 89345 chr11 135086622 + 62016295 62017305 LTR13 1007 + 0 1007 19790 304 1 0 395 2 0 308 chain 147581 chr11 135086622 + 62088908 62091236 MER4-int 2692 + 1 2025 12512 10 1 0 25 2 0 63 2 0 5 14 15 183 0 1 82 6 4 161 6 15 68 0 5 87 10 0 72 0 5 56 0 1 33 10 4 23 0 1 87 0 1 178 7 10 281 1 6 22 10 5 79 308 0 191 2 0 103 0 1 7 0 2 13 6 5 114 chain 21490 chr11 135086622 + 62104301 62104612 THE1C 375 + 10 320 54520 121 4 8 40 24 19 122 chain 3173 chr11 135086622 + 62106701 62106739 Charlie18a 321 + 60 98 98181 38 chain 10508 chr11 135086622 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8908 chr11 135086622 + 62240482 62240586 L1P1 4361 + 3770 3874 72768 104 chain 28377 chr11 135086622 + 62251783 62252181 LTR3 431 + 27 422 44306 231 3 0 113 0 6 9 21 15 21 chain 165566 chr11 135086622 + 62277957 62280312 SVA_F 1814 + 9 1812 11370 879 1 0 36 275 0 23 0 15 193 98 0 58 51 0 58 142 0 541 chain 17458 chr11 135086622 + 62278885 62279148 SVA_F 1814 + 937 1164 43033 10 1 15 129 50 0 73 chain 2240 chr11 135086622 + 62279025 62279050 SVA_F 1814 + 1267 1291 63141 7 1 0 17 chain 891 chr11 135086622 + 62279378 62279412 SVA_F 1814 + 1120 1154 85507 34 chain 2372 chr11 135086622 + 62279434 62279462 SVA_F 1814 + 887 915 71874 28 chain 12826 chr11 135086622 + 62279629 62279769 SVA_F 1814 + 1095 1232 57399 75 1 0 11 2 0 51 chain 35755 chr11 135086622 + 62285677 62286173 LTR10D 510 + 2 510 37566 67 10 5 4 0 1 70 0 17 63 2 0 5 0 1 4 1 0 4 0 3 173 2 0 91 chain 275659 chr11 135086622 + 62288947 62292032 L1PA4 6152 + 2259 5349 7560 1729 0 1 359 0 4 997 chain 2788 chr11 135086622 + 62302508 62302540 HUERS-P3b-int 2065 + 541 573 101718 32 chain 2694 chr11 135086622 + 62313062 62313253 LTR33 499 + 242 430 102378 17 125 120 12 10 12 27 chain 37082 chr11 135086622 + 62325793 62326267 LTR2B 499 + 9 499 36692 5 1 0 57 3 0 40 0 19 178 0 1 8 1 0 69 0 1 112 chain 81958 chr11 135086622 + 62326599 62327566 LTR5_Hs 974 + 0 974 21253 13 10 14 432 0 4 448 1 0 63 chain 9602 chr11 135086622 + 62347957 62348184 MER2B 336 + 85 287 71263 22 9 15 20 78 47 98 chain 13062 chr11 135086622 + 62386334 62386610 MER44A 345 + 109 345 65003 53 0 8 6 0 2 61 95 45 61 chain 80063 chr11 135086622 + 62475509 62477317 HSMAR1 1287 + 0 1248 21612 20 6 7 21 1 2 45 319 13 88 1 2 75 1 4 51 263 2 38 19 17 25 14 17 39 22 23 72 21 6 13 0 3 95 1 6 10 7 4 58 0 4 128 2 3 53 1 5 299 chain 4492 chr11 135086622 + 62486137 62486193 L1MB3 1562 + 1357 1413 88373 56 chain 23342 chr11 135086622 + 62558224 62558500 AluYc 301 + 10 286 51861 110 0 2 94 1 0 50 1 0 20 chain 53070 chr11 135086622 + 62561738 62562381 LTR6A 649 + 3 649 28545 41 1 2 59 2 0 96 1 0 115 0 1 17 0 1 48 0 2 50 1 0 139 4 5 6 0 1 63 chain 3854 chr11 135086622 + 62818891 62818937 L1MEf 1413 + 946 992 92469 46 chain 25301 chr11 135086622 + 62840202 62840496 AluY 311 + 5 300 48781 126 3 0 134 0 4 31 chain 9574 chr11 135086622 + 62893767 62893880 AluSc 308 + 20 133 71321 113 chain 25950 chr11 135086622 + 62962127 62962424 AluSp 311 + 12 309 47796 297 chain 20868 chr11 135086622 + 63085989 63086347 L1PA15 4387 + 3967 4314 55293 121 1 0 12 20 19 11 1 0 55 1 0 14 28 24 44 6 3 44 chain 75670 chr11 135086622 + 63097095 63098079 L1PA8 5853 + 4870 5847 22670 68 7 0 71 1 0 75 0 2 151 2 6 145 0 8 143 13 7 18 1 0 48 2 0 67 1 0 14 1 0 49 2 1 17 1 0 87 chain 22186 chr11 135086622 + 63120219 63120463 L1PA2 6032 + 5785 6029 53587 244 chain 34349 chr11 135086622 + 63124733 63125118 L1PA3long 6157 + 5777 6157 38456 374 5 0 6 chain 66539 chr11 135086622 + 63127973 63128979 LTR13 1007 + 0 1007 24808 68 6 0 254 77 78 51 0 1 178 1 0 56 8 1 11 1 0 4 1 15 24 0 1 70 5 6 138 29 27 24 chain 50518 chr11 135086622 + 63137208 63138356 HUERS-P1-int 2401 + 151 1118 29375 15 9 4 31 9 0 4 48 0 24 2 1 10 14 9 28 4 0 14 121 68 13 1 0 13 2 0 43 3 0 7 1 0 13 0 1 21 1 0 11 2 0 24 2 0 7 16 0 18 31 19 16 9 6 24 2 1 96 6 0 23 4 8 28 0 1 75 11 3 15 1 0 159 2 1 14 2 1 5 2 0 43 28 29 21 chain 12975 chr11 135086622 + 63142986 63143184 HSMAR1 1287 + 1072 1282 65146 23 8 20 30 0 1 110 12 11 15 chain 21173 chr11 135086622 + 63161159 63161417 THE1B-int 1605 + 1341 1600 54919 82 6 7 170 chain 442533 chr11 135086622 + 63167492 63173383 L1PA8 5853 + 50 5853 4530 22 2 0 10 1 0 13 53 14 100 1 2 94 0 4 300 1 0 5 0 1 42 2 1 4 0 1 130 7 8 168 1 2 178 0 1 271 1 0 128 2 1 279 0 1 75 0 2 110 0 1 256 6 10 56 3 1 147 1 0 217 1 2 100 4 1 66 8 9 184 3 4 11 0 1 130 2 3 262 0 1 163 0 1 11 0 2 5 1 0 249 0 4 385 0 2 60 14 15 65 0 1 69 5 15 397 1 2 58 0 1 22 1 6 150 89 8 98 0 1 80 4 3 212 1 0 28 25 23 63 2 1 60 7 6 15 1 0 93 chain 453749 chr11 135086622 + 63193274 63198725 L1PA6 6164 + 606 6162 4290 159 0 1 373 1 2 550 0 1 19 0 5 42 0 94 200 0 1 272 37 0 141 2 0 715 7 10 512 3 1 591 0 1 604 3 35 534 0 1 358 0 4 158 0 2 170 chain 325249 chr11 135086622 + 63201847 63205985 L1P3 4156 + 0 4139 6304 242 20 19 58 2 1 89 6 1 61 2 0 244 11 8 671 0 3 1231 0 6 40 7 0 668 0 8 7 23 15 95 0 2 8 6 7 34 0 1 22 0 4 439 17 23 100 2 0 7 2 1 24 chain 41806 chr11 135086622 + 63207573 63208057 LTR15 485 + 0 484 33484 484 chain 96300 chr11 135086622 + 63211587 63212647 L1PA4 6152 + 4910 5971 18738 655 0 1 405 chain 43756 chr11 135086622 + 63214395 63214880 LTR15 485 + 0 485 32281 485 chain 59808 chr11 135086622 + 63214886 63215590 L1PA7 6471 + 5764 6468 26429 704 chain 8365 chr11 135086622 + 63237085 63237194 L1PA16 3655 + 3484 3590 73982 94 3 0 12 chain 16963 chr11 135086622 + 63251790 63252086 L1PB 1623 + 1241 1525 59843 60 11 9 129 0 1 6 1 0 7 3 2 29 26 18 13 1 0 10 chain 194262 chr11 135086622 + 63252672 63255207 L1P2 5180 + 1763 4336 9912 84 6 4 174 0 1 228 29 76 245 0 4 545 26 10 48 2 1 157 0 1 510 1 3 214 0 1 90 0 1 176 chain 293005 chr11 135086622 + 63284731 63288350 L1PA7 6471 + 2833 6470 7043 71 0 2 392 15 14 147 0 1 95 16 19 409 7 8 7 6 0 494 0 1 4 1 0 63 2 5 41 0 1 63 0 8 267 5 4 175 5 0 7 0 5 466 0 1 22 0 2 223 2 3 285 0 1 13 0 1 292 0 1 24 chain 473959 chr11 135086622 + 63313000 63318505 L1PA4 6152 + 9 5521 3768 571 1 0 119 7 0 1142 1 6 594 4 0 1121 0 7 77 1 0 662 0 1 49 0 2 52 0 1 72 0 2 273 0 1 65 0 1 694 chain 108897 chr11 135086622 + 63337729 63338937 L1PA3long 6157 + 4933 6141 17196 1208 chain 42690 chr11 135086622 + 63366013 63366488 L1PA4 6152 + 3724 4199 32953 475 chain 172140 chr11 135086622 + 63366488 63368429 L1PA4 6152 + 4200 6141 10991 212 0 1 971 1 0 757 chain 33394 chr11 135086622 + 63368438 63368811 L1PA4 6152 + 5768 6141 39181 373 chain 535711 chr11 135086622 + 63418731 63424919 L1PA4 6152 + 12 6151 1583 568 1 0 246 10 12 1362 0 2 962 2 1 318 1 15 16 46 7 475 0 3 136 0 1 641 31 0 533 0 2 500 1 0 339 chain 194012 chr11 135086622 + 63427793 63430440 L1P2 5180 + 2 2735 9927 148 2 1 49 1 0 44 8 7 196 19 0 68 1 0 44 7 6 117 13 14 87 0 15 47 13 0 167 2 1 52 8 9 161 0 2 37 8 9 192 18 20 43 0 1 316 0 1 32 0 1 84 0 1 353 9 10 30 1 98 270 chain 170908 chr11 135086622 + 63430447 63435289 L1PA7 6471 + 5 5310 4809 131 59 45 51 138 335 15 27 26 40 0 19 50 9 18 38 105 181 36 27 161 79 0 4 12 0 25 176 46 55 65 51 52 1020 1 2 57 1 2 1300 3 0 5 0 5 421 3 0 143 1 0 314 0 1 393 0 3 25 chain 549098 chr11 135086622 + 63435303 63441326 L1PA2 6032 + 0 6031 804 703 0 8 1805 0 1 2465 0 1 1041 2 0 7 chain 40874 chr11 135086622 + 63441336 63442494 L1PA7 6471 + 5310 6469 4809 39 1 0 275 0 2 843 chain 266923 chr11 135086622 + 63453092 63456949 HERVH-int 3825 + 0 3825 7786 277 13 15 41 2 1 31 14 15 35 46 60 10 3 0 50 48 215 29 1 0 64 0 3 26 422 0 352 8 1 62 1 0 492 0 1 306 8 13 1019 39 249 458 chain 26484 chr11 135086622 + 63453787 63454188 LTR7 482 + 0 469 47000 50 27 65 33 0 1 4 1 0 71 0 1 38 5 36 15 3 0 51 1 2 102 chain 28993 chr11 135086622 + 63459056 63459494 LTR7 482 + 0 469 43330 86 0 50 13 5 0 33 51 0 48 0 31 121 0 2 37 0 4 44 chain 39598 chr11 135086622 + 63481632 63482067 L1PA4 6152 + 5717 6152 34961 435 chain 194050 chr11 135086622 + 63483858 63486810 L1PB1 5432 + 2514 5430 9922 72 2 0 5 0 5 73 2 23 96 1 2 30 3 0 5 19 9 55 22 25 92 3 2 531 0 3 42 0 1 123 13 15 62 0 3 145 0 8 17 2 1 199 6 10 12 0 1 30 3 4 380 14 10 109 1 0 44 9 6 20 0 1 21 1 0 255 12 16 6 4 0 19 1 0 14 29 0 22 1 0 8 2 1 11 18 12 43 36 34 31 7 6 12 5 1 13 9 0 16 10 7 13 2 0 24 1 0 22 1 0 12 1 0 14 1 0 8 1 0 4 chain 17104 chr11 135086622 + 63488563 63488789 MER30 238 + 0 237 59690 107 5 16 114 chain 50998 chr11 135086622 + 63499572 63500163 LTR10C 591 + 0 591 29214 419 9 9 163 chain 56519 chr11 135086622 + 63501059 63502160 MER4E1 777 + 0 777 27421 24 0 1 17 1 5 267 2 0 15 5 24 83 0 1 14 0 1 5 1 0 85 2 0 8 6 0 26 343 0 120 0 2 54 0 2 23 chain 12009 chr11 135086622 + 63520934 63521085 THE1B 368 + 195 346 66826 11 0 1 86 1 0 53 chain 34083 chr11 135086622 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135086622 + 63611276 63611556 MER97c 529 + 18 299 91886 23 48 46 24 84 81 28 58 64 15 chain 3966 chr11 135086622 + 63617537 63617584 MER34 540 + 418 465 91656 47 chain 3982 chr11 135086622 + 63666980 63667050 Tigger7 736 + 82 150 91570 34 1 0 6 5 4 24 chain 46056 chr11 135086622 + 63791139 63792070 LTR10E 629 + 0 626 31038 15 5 4 53 305 0 92 0 2 60 0 2 68 2 1 82 1 0 182 23 21 39 0 1 4 chain 9663 chr11 135086622 + 63970469 63970576 U6 107 + 0 107 71134 107 chain 3206 chr11 135086622 + 64092909 64092945 MER103C 291 + 133 169 97854 36 chain 23971 chr11 135086622 + 64108049 64108331 AluSp 311 + 18 300 50834 282 chain 6783 chr11 135086622 + 64175742 64175850 MLT1B 390 + 0 109 78371 15 12 13 81 chain 8794 chr11 135086622 + 64296036 64296136 HY3 101 + 0 100 72998 100 chain 2853 chr11 135086622 + 64388185 64388274 MLT1J 494 + 326 415 101227 28 36 37 15 1 0 9 chain 22043 chr11 135086622 + 64399608 64399913 AluSp 311 + 10 297 53781 119 12 7 151 13 0 10 chain 25397 chr11 135086622 + 64402091 64402401 AluSp 311 + 4 305 48628 294 9 0 7 chain 7545 chr11 135086622 + 64408539 64408630 MER31A 484 + 1 92 76011 91 chain 42544 chr11 135086622 + 64413622 64414910 MER41A 554 + 13 554 33039 109 0 1 307 753 0 39 0 5 80 chain 14861 chr11 135086622 + 64417002 64417217 L1MB3 1562 + 374 587 62442 52 1 0 33 7 8 111 2 0 9 chain 2429 chr11 135086622 + 64701776 64701805 SVA_D 2077 + 1214 1243 45404 29 chain 87542 chr11 135086622 + 64701805 64702819 SVA_D 2077 + 727 2077 20130 59 0 162 45 1 0 43 0 2 55 1 0 104 0 177 174 0 1 522 4 0 6 chain 4173 chr11 135086622 + 64781448 64781496 MSTD 398 + 6 54 90308 48 chain 17257 chr11 135086622 + 64928702 64928882 AluYb8 318 + 100 280 59506 180 chain 3685 chr11 135086622 + 65147504 65147546 MLT1G1 539 + 238 280 93712 42 chain 10198 chr11 135086622 + 65147588 65147761 U2 167 + 1 164 70014 80 5 1 46 5 3 10 12 8 15 chain 8811 chr11 135086622 + 65154026 65154137 HSMAR2 1300 + 1 112 72973 111 chain 25274 chr11 135086622 + 65161414 65161726 AluSc5 308 + 1 308 48830 117 5 0 190 chain 155707 chr11 135086622 + 65238646 65240322 SVA_F 1814 + 0 1814 12024 930 2 0 12 0 140 732 chain 6562 chr11 135086622 + 65259931 65260013 MER101 471 + 31 113 79114 82 chain 35103 chr11 135086622 + 65260563 65261021 LTR2 463 + 0 463 37956 65 0 1 54 8 12 230 12 13 51 1 0 37 chain 6386 chr11 135086622 + 65383839 65383913 LTR8 732 + 658 732 79720 74 chain 166856 chr11 135086622 + 65450418 65452460 SVA_D 2077 + 58 2071 11284 703 0 40 116 1 0 23 97 8 38 1 0 48 2 4 211 49 0 103 0 49 520 0 20 130 chain 7820 chr11 135086622 + 65451261 65451358 SVA_D 2077 + 1205 1302 41745 97 chain 2839 chr11 135086622 + 65451658 65451707 SVA_D 2077 + 1073 1122 38743 49 chain 19218 chr11 135086622 + 65705091 65705439 THE1D 372 + 2 371 57330 50 33 53 61 45 47 11 1 0 147 chain 85569 chr11 135086622 + 65706119 65707263 LTR13 1007 + 0 1007 20524 121 0 4 7 0 3 246 151 3 146 0 4 473 chain 10425 chr11 135086622 + 65706495 65706617 LTR13 1007 + 384 506 69564 122 chain 2106 chr11 135086622 + 65706619 65706642 LTR13 1007 + 358 381 105770 23 chain 35878 chr11 135086622 + 65709664 65710435 MER41A 554 + 0 554 37484 122 5 8 128 0 19 114 5 41 36 283 8 78 chain 6591 chr11 135086622 + 65734487 65734573 L1MA8 2339 + 1992 2077 79011 17 1 0 68 chain 38478 chr11 135086622 + 65735213 65735703 MLT2A2 560 + 42 547 35733 283 1 5 66 6 17 134 chain 28775 chr11 135086622 + 65753280 65753654 MLT2A1 477 + 0 392 43665 28 0 5 109 0 1 24 0 4 191 0 12 11 4 0 7 chain 36615 chr11 135086622 + 65836560 65837065 L1PA8 5853 + 5350 5853 37007 46 0 2 127 1 4 35 1 0 46 3 1 67 8 14 9 8 0 39 2 1 19 1 0 93 chain 45115 chr11 135086622 + 66000648 66001148 LTR2C 499 + 0 499 31519 441 1 0 58 chain 25844 chr11 135086622 + 66010053 66010481 LTR3A 482 + 26 434 47947 81 0 1 7 0 1 28 23 24 60 54 32 146 2 1 27 chain 6071 chr11 135086622 + 66053142 66053208 U13 108 + 0 66 80832 66 chain 204634 chr11 135086622 + 66093257 66095462 L1PA3long 6157 + 2204 4410 9550 984 0 1 1221 chain 6794 chr11 135086622 + 66125134 66125282 L1PB1 5432 + 5243 5373 78339 38 1 0 15 24 12 11 10 8 5 1 0 14 2 0 27 chain 4244 chr11 135086622 + 66147853 66147911 L1MA3 4352 + 4226 4282 89855 32 2 0 24 chain 24154 chr11 135086622 + 66172710 66172992 AluSc 308 + 8 297 50568 12 0 7 270 chain 142832 chr11 135086622 + 66200408 66204075 L1MA3 4352 + 352 3254 12873 10 0 2 6 2 0 48 9 1 57 18 22 192 4 10 21 0 1 51 2 0 14 20 18 63 331 23 36 0 2 32 0 1 55 1 0 6 1 2 55 2 1 29 1 0 147 1 0 4 1157 742 45 5 6 207 0 1 51 11 10 12 7 10 5 1 0 19 1 5 34 1 0 87 1 6 11 5 0 59 10 8 146 1 0 410 48 0 54 2 6 59 chain 12610 chr11 135086622 + 66229736 66229894 AluSp 311 + 77 230 65786 45 5 0 108 chain 46955 chr11 135086622 + 66319633 66320147 MER9a2 513 + 0 513 30677 153 1 0 360 chain 101657 chr11 135086622 + 66320179 66321333 L1PA4 6152 + 5000 6152 18107 299 1 2 71 2 0 526 2 0 98 0 1 155 chain 7763 chr11 135086622 + 66348119 66348201 tRNA-Ser-AGY 82 + 0 82 75454 82 chain 27765 chr11 135086622 + 66378788 66379118 L1PA6 6164 + 5832 6162 45234 330 chain 7488 chr11 135086622 + 66386937 66387046 MLT1A0 366 + 257 366 76154 84 0 3 5 6 3 14 chain 3931 chr11 135086622 + 66392886 66392934 L1ME1 1623 + 884 931 91895 9 1 0 38 chain 3071 chr11 135086622 + 66396618 66396652 MLT1D 503 + 449 483 99088 34 chain 37476 chr11 135086622 + 66445486 66446411 MER4B 649 + 0 576 36418 29 5 0 170 0 23 94 5 2 46 5 0 77 43 0 6 21 9 9 308 0 31 8 12 68 chain 13315 chr11 135086622 + 66449598 66449908 MER4D1 891 + 590 882 64596 8 0 7 57 1 0 4 60 33 20 2 6 66 37 36 55 chain 19130 chr11 135086622 + 66457140 66457456 LTR43B 570 + 157 474 57421 136 66 67 114 chain 49919 chr11 135086622 + 66464115 66464675 L1PA4 6152 + 5592 6151 29594 251 1 0 308 chain 8399 chr11 135086622 + 66572389 66572529 MER4D1 891 + 299 440 73904 61 0 1 21 6 14 9 6 0 5 1 0 20 1 0 10 chain 39040 chr11 135086622 + 66573596 66574046 LTR7 482 + 0 482 35325 230 0 31 28 0 1 192 chain 209788 chr11 135086622 + 66574048 66576727 HERVH-int 3825 + 0 2685 9356 21 0 1 34 0 3 122 1 5 26 0 11 311 5 0 36 1 0 9 2 1 12 11 80 25 45 0 20 19 0 6 0 1 5 1 0 50 0 1 4 2 0 328 6 20 97 22 0 202 9 0 14 14 11 19 1 0 209 1 6 402 0 5 204 12 13 371 chain 17062 chr11 135086622 + 66576765 66576956 LTR7 482 + 290 482 59741 17 0 1 174 chain 165034 chr11 135086622 + 66587015 66589110 SVA_F 1814 + 0 1810 11408 38 0 1 847 0 2 60 77 14 83 2 1 106 98 0 61 126 0 597 chain 4295 chr11 135086622 + 66587960 66588037 SVA_F 1814 + 1012 1089 50894 77 chain 4124 chr11 135086622 + 66588253 66588300 SVA_F 1814 + 888 935 84785 47 chain 10661 chr11 135086622 + 66588387 66588499 SVA_F 1814 + 1037 1150 58895 90 0 1 22 chain 3289 chr11 135086622 + 66596979 66597015 MIR 256 + 105 141 97109 36 chain 24333 chr11 135086622 + 66746440 66746726 AluSp 311 + 8 294 50276 286 chain 18017 chr11 135086622 + 66771893 66772134 Tigger1 2417 + 1417 1676 58637 89 8 26 144 chain 126460 chr11 135086622 + 66778584 66779995 L1PA4 6152 + 4561 5976 14491 743 0 4 74 2 0 407 0 2 185 chain 4769 chr11 135086622 + 66919762 66919822 U7 62 + 1 61 86861 60 chain 4381 chr11 135086622 + 66940740 66940805 L1MB3 1562 + 782 840 88990 19 7 0 39 chain 17449 chr11 135086622 + 66961712 66961953 LOR1b 457 + 0 248 59295 27 0 2 10 1 9 100 3 0 100 chain 6986 chr11 135086622 + 66973230 66973336 MSTA 426 + 278 392 77648 18 14 22 74 chain 128221 chr11 135086622 + 66988622 66990143 LTR12C 1709 + 0 1705 14251 202 0 1 6 0 10 177 4 5 91 0 1 206 0 159 217 0 2 34 1 0 113 0 4 256 6 5 12 0 8 196 chain 29803 chr11 135086622 + 67005384 67005743 MER41A 554 + 0 359 42231 359 chain 3207 chr11 135086622 + 67151996 67152033 MER33 330 + 198 235 97818 37 chain 23826 chr11 135086622 + 67188211 67188507 AluY 311 + 15 303 51059 23 4 0 92 1 2 165 5 0 6 chain 6714 chr11 135086622 + 67218909 67218988 MER30 238 + 158 238 78592 28 0 1 51 chain 17547 chr11 135086622 + 67225126 67225352 MER75 514 + 44 273 59181 56 4 7 166 chain 17218 chr11 135086622 + 67333923 67334166 Tigger2 2703 + 2203 2467 59558 81 1 0 33 5 14 34 2 11 73 0 4 14 chain 18760 chr11 135086622 + 67362413 67362655 7SK 245 + 0 245 57834 137 4 7 101 chain 100292 chr11 135086622 + 67475909 67477234 LTR12C 1709 + 0 1709 18266 291 0 1 46 0 43 51 1 0 32 3 0 186 0 278 184 1 0 4 4 2 97 45 14 211 0 101 86 1 0 82 chain 23081 chr11 135086622 + 67512597 67512887 AluSc8 310 + 6 298 52238 125 2 4 163 chain 9827 chr11 135086622 + 67515533 67515656 L1MC3 1789 + 1091 1214 70770 123 chain 22484 chr11 135086622 + 67532000 67532332 MER41D 557 + 249 557 53144 110 37 13 185 chain 3800 chr11 135086622 + 67539799 67539843 MER51A 677 + 301 345 92844 44 chain 9453 chr11 135086622 + 67550895 67551031 THE1D 372 + 226 367 71602 12 5 11 88 6 5 25 chain 11394 chr11 135086622 + 67560725 67560951 LTR23 429 + 0 237 67923 44 10 11 20 5 6 10 29 36 13 1 3 94 chain 44756 chr11 135086622 + 67563790 67564319 MER41A 554 + 0 554 31718 39 0 24 462 0 1 28 chain 73274 chr11 135086622 + 67572534 67573506 LTR13_ 950 + 0 950 23266 167 0 3 6 0 5 24 22 4 89 1 0 308 11 0 76 0 2 33 16 3 74 1 2 5 0 10 139 chain 12257 chr11 135086622 + 67575140 67575312 LTR23 429 + 118 290 66360 28 4 5 120 1 0 19 chain 131143 chr11 135086622 + 67618852 67620425 LTR12C 1709 + 0 1709 13910 41 5 1 150 0 3 504 0 159 252 1 0 7 3 1 99 7 11 262 22 1 192 2 0 26 chain 7294 chr11 135086622 + 67626293 67626397 LTR12C 1709 + 8 104 76686 30 13 5 61 chain 17670 chr11 135086622 + 67626421 67626637 LTR12C 1709 + 661 986 59044 136 0 109 80 chain 12517 chr11 135086622 + 67626650 67626831 LTR12C 1709 + 1211 1396 59723 13 0 4 168 chain 18533 chr11 135086622 + 67626831 67627042 LTR12C 1709 + 1498 1709 58069 211 chain 4714 chr11 135086622 + 67636385 67636489 L1MB3 1562 + 960 1065 87175 12 1 0 28 31 33 32 chain 26523 chr11 135086622 + 67661028 67661400 MER4E 760 + 379 752 46944 67 1 0 51 1 0 5 0 1 65 17 18 138 0 1 27 chain 6108 chr11 135086622 + 67671896 67671972 MER4A1 472 + 134 217 80701 48 0 7 28 chain 194437 chr11 135086622 + 67676231 67679160 L1PB1 5432 + 2089 5417 9907 286 0 4 28 0 1 94 2 0 22 0 1 317 2 0 631 1 3 6 2 0 6 1 2 219 7 10 9 5 0 7 18 8 34 0 1 268 7 3 143 1 2 231 234 678 14 3 0 21 1 0 9 19 14 6 2 0 53 2 1 16 1 0 27 0 1 16 1 0 15 24 12 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 9 1 0 4 chain 73314 chr11 135086622 + 67698549 67699573 MER11A 1151 + 0 1151 23257 47 8 107 22 8 0 54 1 0 35 0 1 28 4 0 146 0 1 12 0 1 82 1 2 46 3 4 96 5 6 145 17 48 37 0 1 110 8 9 26 1 3 82 chain 91762 chr11 135086622 + 67702709 67704218 HERVK11-int 2540 + 911 2303 19375 90 59 43 21 2 0 56 19 18 35 17 13 22 19 9 10 1 0 25 16 5 32 21 1 437 6 1 106 1 0 188 1 0 77 1 0 4 7 5 129 30 0 9 47 35 21 chain 9501 chr11 135086622 + 67705289 67705411 MER11A 1151 + 0 124 71471 108 0 2 14 chain 79982 chr11 135086622 + 67757888 67758849 LTR5_Hs 974 + 0 974 21629 50 0 3 182 0 1 54 0 2 147 0 3 10 0 4 518 chain 29380 chr11 135086622 + 67759684 67760095 LTR7 482 + 0 482 42768 68 9 47 109 3 4 30 0 1 6 0 31 11 2 1 57 1 2 115 chain 284211 chr11 135086622 + 67760097 67763701 HERVH-int 3825 + 0 3825 7313 212 0 11 312 1 0 4 1 0 6 0 1 24 1 0 10 1 0 10 4 0 7 25 59 42 46 1 15 21 0 9 0 1 5 2 1 49 1 0 447 15 0 417 5 6 36 4 31 302 0 10 273 0 1 335 0 10 423 9 11 14 0 1 24 8 218 260 0 2 149 0 1 75 chain 29282 chr11 135086622 + 67764955 67765352 LTR7 482 + 1 468 42920 68 8 46 68 1 0 41 3 4 30 0 32 178 chain 10728 chr11 135086622 + 67771561 67771769 MSTA 426 + 258 426 68994 42 10 18 51 48 0 57 chain 31191 chr11 135086622 + 67880114 67880532 MER4A1 472 + 35 470 40982 65 0 2 94 0 3 27 18 26 197 0 4 17 chain 72915 chr11 135086622 + 67892752 67893825 MER11A 1151 + 0 1144 23331 55 0 99 76 1 0 64 4 0 129 21 22 11 0 3 79 0 1 136 1 5 157 24 0 10 8 15 21 18 0 37 0 1 60 30 32 131 chain 9440 chr11 135086622 + 67895630 67895737 U6 107 + 0 107 71619 107 chain 50144 chr11 135086622 + 67895737 67896320 L1PA2 6032 + 5449 6032 29507 417 5 0 7 21 26 133 chain 33657 chr11 135086622 + 67920365 67920820 HERVK-int 6823 + 5125 5581 38960 34 0 1 4 4 3 105 0 3 198 1 0 4 0 1 36 1 0 7 7 6 54 chain 85569 chr11 135086622 + 67921259 67922280 LTR5A 1029 + 0 1029 20525 150 1 0 27 0 1 767 0 6 14 2 4 60 chain 19330 chr11 135086622 + 67945303 67945564 L1PA8 5853 + 5586 5842 57204 20 9 7 66 1 0 61 2 1 19 1 0 82 chain 11099 chr11 135086622 + 67948486 67948637 L1MA8 2339 + 1934 2082 68410 20 2 0 55 1 0 73 chain 106539 chr11 135086622 + 67963086 67964484 LTR12C 1709 + 0 1708 17490 259 1 2 77 10 53 73 0 3 183 0 278 184 1 0 4 4 2 46 4 2 52 1 0 6 11 4 333 1 0 66 1 0 81 chain 3390 chr11 135086622 + 68029255 68029307 LOR1a 498 + 400 453 96175 25 4 5 23 chain 9406 chr11 135086622 + 68099000 68099237 L1MB8 1703 + 1430 1623 71686 6 2 0 27 8 12 96 80 34 18 chain 23491 chr11 135086622 + 68101310 68101818 L1MA6 2487 + 686 1114 51599 52 16 19 68 0 4 54 6 0 8 103 25 34 1 0 12 16 11 54 10 13 74 chain 23323 chr11 135086622 + 68244952 68245328 THE1D 372 + 0 372 51893 57 13 6 97 31 34 14 15 16 116 1 0 32 chain 3199 chr11 135086622 + 68250370 68250411 HY3 101 + 56 96 97892 35 1 0 5 chain 22831 chr11 135086622 + 68250942 68251317 THE1C 375 + 0 375 52616 81 4 5 25 0 1 18 5 9 6 4 0 39 26 24 37 11 12 93 1 0 25 chain 25575 chr11 135086622 + 68284571 68284907 THE1B 368 + 2 342 48359 167 5 4 25 0 3 9 0 4 16 1 0 11 1 0 101 chain 3490 chr11 135086622 + 68398708 68398747 MER58B 340 + 139 178 95317 39 chain 27936 chr11 135086622 + 68404699 68405009 AluYb8 318 + 11 317 44975 293 4 0 13 chain 12221 chr11 135086622 + 68452906 68453974 L1MA3 4352 + 3910 4303 66436 14 8 0 100 841 181 14 4 1 39 2 0 23 8 6 15 chain 6655 chr11 135086622 + 68506086 68506166 MADE1 96 + 0 96 78795 49 0 16 31 chain 6508 chr11 135086622 + 68517450 68517648 L1MC4 1079 + 55 265 79314 14 1 0 26 100 113 57 chain 9622 chr11 135086622 + 68532796 68532922 Tigger3c 601 + 412 537 71219 9 2 0 94 0 1 21 chain 34995 chr11 135086622 + 68622704 68623198 LTR7 482 + 0 481 38019 121 51 0 109 0 31 56 0 4 44 1 2 15 0 2 97 chain 278881 chr11 135086622 + 68623201 68628555 HERVH-int 3825 + 0 3825 7457 499 0 4 28 0 57 11 1 0 5 28 0 15 5 22 14 107 1 23 42 0 18 1 0 82 0 1 4 2 0 286 13 14 152 18 8 187 9 5 6 5 0 23 1243 7 32 1 0 96 4 3 95 152 138 300 0 2 272 0 4 560 166 1 41 1 0 582 0 2 225 chain 3338 chr11 135086622 + 68623872 68623907 HERVH-int 3825 + 656 691 96713 35 chain 73877 chr11 135086622 + 68625123 68625954 L1PA4 6152 + 5318 6149 23126 831 chain 34387 chr11 135086622 + 68632349 68632787 LTR7 482 + 0 473 38440 138 0 1 85 3 4 35 1 32 124 13 15 39 chain 7774 chr11 135086622 + 68633777 68633863 LTR7 482 + 0 86 75429 86 chain 7211 chr11 135086622 + 68633863 68633951 LTR7 482 + 136 224 76906 88 chain 2698 chr11 135086622 + 68633954 68633988 LTR7 482 + 228 263 102359 30 0 1 4 chain 9843 chr11 135086622 + 68633989 68634109 LTR7 482 + 295 419 70732 10 0 3 57 1 2 52 chain 3989 chr11 135086622 + 68634121 68634164 LTR7 482 + 433 476 91523 43 chain 288823 chr11 135086622 + 68634172 68637739 HERVH-int 3825 + 0 3825 7167 212 0 11 110 1 0 117 1 27 54 1 0 14 0 1 24 1 0 10 1 0 9 4 0 14 17 49 4 1 0 17 41 0 24 1 0 43 18 18 20 0 1 447 16 0 459 5 32 281 0 8 295 0 1 334 0 1 433 9 11 5 0 3 31 8 218 260 0 2 225 chain 34003 chr11 135086622 + 68638994 68639439 LTR7 482 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135086622 + 68875721 68876032 THE1C 375 + 6 314 51784 119 3 0 57 1 2 6 1 0 124 chain 10894 chr11 135086622 + 68924897 68925067 MER30 238 + 48 228 68706 57 9 22 72 8 5 24 chain 16873 chr11 135086622 + 68993058 68993361 LTR46 455 + 43 433 59942 61 44 132 130 19 25 13 1 0 8 6 0 21 chain 27073 chr11 135086622 + 69090680 69090966 AluYb9 318 + 29 315 46163 286 chain 11111 chr11 135086622 + 69128399 69128558 L1MA5 2750 + 2081 2235 68394 21 11 7 76 1 0 50 chain 30063 chr11 135086622 + 69170395 69170828 MLT2A1 477 + 0 477 41994 164 2 0 5 4 1 12 0 1 15 1 2 93 0 1 4 12 11 63 0 7 8 4 0 6 6 50 34 chain 3833 chr11 135086622 + 69269537 69269594 MIRb 242 + 53 108 92613 13 4 2 40 chain 21263 chr11 135086622 + 69441828 69442080 AluSp 311 + 50 302 54810 252 chain 34216 chr11 135086622 + 69590247 69590641 L1PA5 6144 + 5738 6132 38555 394 chain 24150 chr11 135086622 + 69765221 69765526 AluSp 311 + 0 302 50572 56 5 1 157 0 1 87 chain 5689 chr11 135086622 + 69765931 69766040 MER44B 551 + 336 459 82393 31 14 24 39 8 12 17 chain 11903 chr11 135086622 + 69786632 69786821 MER30 238 + 37 235 66997 65 3 0 5 4 0 15 20 36 77 chain 28953 chr11 135086622 + 69806748 69807139 MLT2A1 477 + 0 395 43401 17 0 4 119 1 2 26 1 5 150 1 0 62 4 0 10 chain 22706 chr11 135086622 + 69876767 69877054 AluSp 311 + 8 287 52819 86 6 0 38 2 0 155 chain 27773 chr11 135086622 + 69886809 69887102 AluYa5 310 + 10 303 45224 293 chain 4945 chr11 135086622 + 70002502 70002559 Tigger3a 397 + 196 253 85913 57 chain 9219 chr11 135086622 + 70075362 70075467 U6 107 + 0 105 72080 105 chain 12687 chr11 135086622 + 70096364 70096579 MER1B 344 + 36 250 65641 97 45 44 73 chain 4434 chr11 135086622 + 70146001 70146056 MIR 256 + 72 127 88702 55 chain 28209 chr11 135086622 + 70555748 70556119 Tigger1 2417 + 611 983 44551 210 7 8 154 chain 51849 chr11 135086622 + 70589119 70589870 Tigger1 2417 + 988 1745 28924 174 0 1 86 3 0 5 4 0 44 1 0 89 0 3 9 23 24 30 5 6 214 15 23 49 chain 19432 chr11 135086622 + 70617784 70617999 L1PA4 6152 + 5937 6152 57102 215 chain 53802 chr11 135086622 + 70757965 70758656 LTR17 781 + 0 757 28284 206 0 1 120 1 0 146 3 0 46 4 3 11 1 0 23 0 49 105 0 22 25 chain 7525 chr11 135086622 + 70773678 70773771 L1MB7 1623 + 1082 1175 76063 93 chain 25361 chr11 135086622 + 70781771 70782070 L1PA5 6144 + 5643 5942 48685 16 0 3 5 3 0 275 chain 6677 chr11 135086622 + 70793155 70793373 MER8 282 + 0 260 78713 60 93 141 15 0 5 14 18 7 18 chain 15107 chr11 135086622 + 70904816 70905010 THE1B 368 + 163 368 62146 5 1 0 24 0 2 115 0 10 49 chain 23410 chr11 135086622 + 70912317 70912606 THE1A 353 + 0 286 51743 110 1 0 92 2 0 84 chain 3395 chr11 135086622 + 70953854 70953898 MSTB1 431 + 163 206 96118 8 1 0 35 chain 76368 chr11 135086622 + 71121770 71122646 L1PA6 6164 + 5279 6154 22474 697 1 0 178 chain 12440 chr11 135086622 + 71156983 71157117 L1PA5 6144 + 6001 6135 66081 134 chain 58070 chr11 135086622 + 71160993 71161894 MER4D1 891 + 0 883 26941 25 9 10 11 1 0 4 12 8 131 1 0 117 4 3 233 0 2 58 0 2 56 44 34 37 16 7 56 0 1 5 12 13 60 0 1 9 chain 5553 chr11 135086622 + 71218172 71218241 Tigger3b 1229 + 695 765 83025 11 0 1 58 chain 3827 chr11 135086622 + 71237325 71237373 MER58A 224 + 44 91 92666 20 1 0 27 chain 22994 chr11 135086622 + 71276499 71278154 Tigger1 2417 + 1288 2287 52370 75 8 0 51 0 1 17 13 8 4 1 0 13 1245 606 108 12 13 30 7 0 18 1 2 16 0 1 36 chain 3456 chr11 135086622 + 71281255 71281299 MER20 218 + 96 140 95582 44 chain 2690 chr11 135086622 + 71381436 71381493 MER53 195 - 98 158 102413 25 8 12 13 1 0 10 chain 29759 chr11 135086622 + 71505504 71505902 LTR7 482 + 0 470 42291 69 8 46 109 8 40 122 0 2 82 chain 472980 chr11 135086622 + 71511047 71516387 L1PA4 6152 + 8 5340 3788 572 1 0 482 0 2 62 0 1 117 1 0 1144 0 1 90 10 0 325 0 1 1174 3 0 368 0 4 573 5 0 377 0 3 36 chain 82466 chr11 135086622 + 71534702 71535694 LTR5B 1012 + 0 1012 21140 123 0 14 265 0 5 82 1 0 514 0 2 7 chain 56256 chr11 135086622 + 71544371 71545122 MER4E1 777 + 17 777 27501 41 0 4 170 0 1 99 1 20 84 0 1 14 0 1 5 10 9 75 3 0 6 11 0 188 2 0 42 chain 346726 chr11 135086622 + 71586019 71590077 HERVE-int 4064 + 0 4064 5954 545 14 11 255 3 0 722 1 2 675 3 0 156 1 0 7 0 1 124 2 3 250 0 1 644 0 10 33 0 3 34 1 0 588 chain 81565 chr11 135086622 + 71599381 71600389 LTR5A 1029 + 7 1029 21321 128 1 14 310 0 1 569 chain 338480 chr11 135086622 + 71611582 71615633 HERVE-int 4064 + 0 4064 6101 58 0 2 227 7 0 356 14 17 98 10 10 45 4 1 719 1 2 170 0 13 149 0 1 237 1 0 398 2 0 321 0 7 179 7 9 344 0 1 41 2 0 72 1 0 123 2 1 463 chain 85289 chr11 135086622 + 71625996 71627026 LTR5A 1029 + 0 1029 20572 147 1 0 882 chain 4458 chr11 135086622 + 71662618 71662669 MADE1 96 + 45 96 88567 51 chain 9586 chr11 135086622 + 71697677 71697791 LTR2 463 + 241 355 71287 114 chain 5323 chr11 135086622 + 71705178 71705278 MER58A 224 + 17 115 84085 17 4 0 9 3 4 45 4 5 18 chain 122992 chr11 135086622 + 71707974 71709713 HERVS71-int 4705 + 647 2302 15024 8 1 0 5 4 0 12 7 4 5 1 0 17 6 4 18 16 10 10 8 4 10 2 0 6 75 27 21 4 0 148 2 0 6 8 3 637 1 0 374 2 1 325 chain 47047 chr11 135086622 + 71712876 71713426 LTR6B 557 + 0 557 30636 333 0 1 34 0 5 27 0 1 156 chain 436976 chr11 135086622 + 71723727 71728770 L1PA4 6152 + 0 5077 4620 724 0 1 7 1 0 4 0 1 130 0 27 1285 0 2 908 1 0 689 0 1 164 0 1 172 0 2 225 0 1 733 chain 76367 chr11 135086622 + 71737926 71741110 HERVH-int 3825 + 0 3271 7162 333 1 0 136 1 0 4 4 61 36 2 1 9 1 0 12 37 64 40 2 1 14 54 13 5 1 0 26 0 1 23 1 0 250 0 1 1031 4 0 31 8 13 297 1 49 820 chain 338605 chr11 135086622 + 71742202 71746270 HERVE-int 4064 + 0 4051 6096 386 0 1 425 1 2 680 0 1 38 26 1 333 0 2 19 0 1 316 10 11 21 0 1 136 0 1 238 1 2 791 2 0 645 chain 42184 chr11 135086622 + 71748930 71749426 LTR2C 499 + 0 499 33259 110 0 1 66 1 4 76 1 0 152 0 1 25 1 0 64 chain 13192 chr11 135086622 + 71749426 71749976 HERVH-int 3825 + 3271 3825 7162 313 1 5 236 chain 74239 chr11 135086622 + 71750581 71751626 MER11C 1089 + 0 1063 23022 247 7 16 54 0 4 65 1 0 149 70 69 86 1 5 4 1 0 38 0 1 5 0 2 120 1 2 53 1 0 117 0 1 25 chain 20799 chr11 135086622 + 71774173 71774550 MER66B 489 + 52 448 55361 150 6 5 4 0 1 59 69 90 39 12 10 38 chain 14810 chr11 135086622 + 71775161 71775342 LTR12C 1709 + 769 949 62515 68 1 0 112 chain 46187 chr11 135086622 + 71817225 71817822 PRIMA4_LTR 623 + 0 623 30967 169 6 29 63 4 5 125 0 1 41 3 4 186 chain 125495 chr11 135086622 + 71830806 71832256 SVA_C 1631 + 25 1616 14629 12 15 7 10 4 0 51 0 1 506 0 1 33 0 117 154 0 34 665 chain 338591 chr11 135086622 + 71886033 71890084 HERVE-int 4064 + 0 4064 6097 34 0 1 264 0 1 513 4 1 719 1 2 600 6 7 69 3 0 229 7 8 104 0 6 5 6 0 430 0 4 211 5 6 182 1 11 70 1 0 587 chain 82359 chr11 135086622 + 71899368 71900382 LTR5A 1029 + 0 1029 21163 19 0 2 118 1 14 876 chain 323036 chr11 135086622 + 71908490 71912322 HERVE-int 4064 + 0 3843 6355 299 0 1 513 4 1 710 19 22 665 18 15 55 1 3 567 0 2 543 0 10 71 1 0 366 chain 3799 chr11 135086622 + 71955071 71955193 MER96 175 + 0 133 92850 22 52 53 14 5 15 29 chain 5841 chr11 135086622 + 71961619 71961692 L1M4c 1769 + 1654 1727 81729 73 chain 9757 chr11 135086622 + 71970084 71970276 L1MB2 1706 + 1430 1638 70918 21 0 3 33 0 5 63 54 62 21 chain 11717 chr11 135086622 + 72117714 72117983 MLT1D 503 + 76 349 67370 31 1 0 7 14 24 21 89 84 106 chain 64139 chr11 135086622 + 72153926 72154685 LTR17 781 + 0 781 25383 222 1 2 103 1 0 401 0 22 31 chain 44182 chr11 135086622 + 72157575 72158143 MER4E1 777 + 17 587 32026 163 9 0 49 0 2 103 0 2 109 0 6 89 5 6 41 chain 75992 chr11 135086622 + 72164373 72165341 LTR5_Hs 974 + 0 974 22573 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 118652 chr11 135086622 + 72168584 72170470 THE1B-int 1605 + 17 1605 15781 252 0 1 92 332 0 68 1 26 114 18 21 84 0 4 393 11 12 4 1 0 164 0 1 75 0 1 41 9 8 227 chain 19582 chr11 135086622 + 72209123 72209502 THE1D 372 + 0 372 56920 40 59 51 70 31 37 6 4 0 20 1 0 148 chain 25730 chr11 135086622 + 72264315 72264684 THE1D 372 + 0 372 48123 71 9 10 92 18 20 179 chain 88185 chr11 135086622 + 72365569 72367163 L1PA16 3655 + 2252 3520 20005 11 0 1 38 0 1 77 0 1 294 2 1 152 2 0 36 347 0 32 1 0 7 1 0 5 0 3 6 2 0 10 1 0 4 5 10 134 4 29 96 0 4 86 2 0 69 39 30 131 chain 15511 chr11 135086622 + 72416775 72417309 L1MB7 1623 + 1085 1527 61633 47 0 1 51 94 63 18 58 48 10 1 0 14 18 16 10 3 1 12 1 0 47 1 0 5 47 13 10 5 2 9 1 2 15 1 0 13 4 0 7 1 0 19 3 0 9 chain 12284 chr11 135086622 + 72424218 72424478 LTR23 429 + 43 274 66310 37 30 25 34 24 1 27 9 6 49 0 2 34 0 1 4 2 1 10 chain 3692 chr11 135086622 + 72489599 72489665 L1PB1 5432 + 5366 5427 93667 4 1 0 20 2 1 13 1 0 18 2 0 5 chain 12068 chr11 135086622 + 72507649 72507812 MER30 238 + 59 238 66721 46 4 21 60 1 0 52 chain 19701 chr11 135086622 + 72515099 72515344 L1PA15 4387 + 2700 2945 56783 245 chain 37568 chr11 135086622 + 72564527 72564989 LTR2 463 + 0 463 36354 127 0 3 16 1 0 61 1 0 147 0 1 7 1 0 101 chain 2922 chr11 135086622 + 72655640 72655673 MIRc 230 + 83 116 100657 33 chain 24026 chr11 135086622 + 72700722 72701002 AluSp 311 + 1 286 50759 121 0 5 159 chain 9169 chr11 135086622 + 72766003 72766114 HY1 111 + 0 111 72188 111 chain 145610 chr11 135086622 + 72909050 72910840 SVA_A 1864 + 8 1864 12646 12 8 6 20 0 10 561 3 37 33 0 76 37 3 0 85 1 0 23 3 0 35 3 0 44 42 1 147 2 0 8 1 0 93 13 11 177 0 4 436 chain 1157 chr11 135086622 + 72909921 72909952 SVA_A 1864 + 577 608 67222 31 chain 228107 chr11 135086622 + 72943992 72946545 L1PA4 6152 + 3581 6141 8800 1036 0 1 145 0 1 540 0 4 693 0 1 139 chain 6041 chr11 135086622 + 72962384 72962469 Charlie1b 519 + 429 515 80923 28 2 3 55 chain 58811 chr11 135086622 + 72977630 72978320 L1PA5 6144 + 5439 6144 26735 121 1 13 202 0 2 284 0 1 82 chain 310484 chr11 135086622 + 72990373 72993909 L1PA4 6152 + 2655 6143 6604 124 1 0 147 2 0 245 1 0 7 1 0 31 1 0 564 0 1 23 49 0 522 1 0 317 0 5 1176 0 1 261 0 1 63 chain 75241 chr11 135086622 + 73045093 73045922 L1PA3long 6157 + 5322 6152 22786 748 0 1 81 chain 17551 chr11 135086622 + 73049511 73049697 L1HS 6032 + 5846 6032 59174 186 chain 4260 chr11 135086622 + 73050913 73050991 MER5C 305 + 43 123 89759 13 15 16 38 0 1 12 chain 510251 chr11 135086622 + 73061019 73067488 L1PA7 6471 + 5 6469 2755 234 55 63 102 2 0 54 1 0 15 1 0 104 3 0 71 2 1 93 10 15 344 5 6 108 0 4 34 21 40 368 4 5 105 1 2 1323 0 4 397 5 0 23 1 2 7 1 0 20 6 10 58 1 0 5 69 1 583 5 6 409 2 0 50 5 11 267 1 0 110 1 8 385 0 4 102 0 4 63 0 5 68 0 2 244 15 14 247 0 3 107 0 1 83 0 1 69 chain 16395 chr11 135086622 + 73088216 73088436 Tigger3c 601 + 356 588 60530 27 5 9 102 0 8 86 chain 27066 chr11 135086622 + 73251936 73252233 AluYk4 311 + 0 296 46177 53 1 0 243 chain 21557 chr11 135086622 + 73497651 73497906 L1PA6 6164 + 5904 6159 54430 255 chain 367954 chr11 135086622 + 73500000 73505115 L1PA8A 6298 + 1801 6291 5696 107 0 1 134 316 0 458 4 0 347 0 2 65 0 1 83 0 1 104 0 1 191 310 0 57 1 2 5 1 0 12 9 6 61 1 9 203 10 11 147 12 8 78 1 0 857 1 2 32 10 12 27 1 0 90 12 4 59 0 4 507 2 1 78 0 2 330 3 1 34 0 1 355 chain 38186 chr11 135086622 + 73528189 73528689 MER41C 542 + 0 520 35920 49 0 1 151 2 0 106 0 17 13 1 5 178 chain 3904 chr11 135086622 + 73545366 73545415 L1MB8 1703 + 1509 1558 92093 49 chain 144116 chr11 135086622 + 73571212 73572876 SVA_D 2077 + 24 2063 12766 8 23 0 415 4 5 122 0 1 108 9 1 206 0 396 28 0 1 30 0 2 4 0 1 36 10 12 44 0 1 4 0 1 613 chain 24698 chr11 135086622 + 73609041 73609317 AluYc 301 + 7 285 49738 113 0 2 163 chain 23154 chr11 135086622 + 73692669 73692959 AluY 311 + 1 283 52137 46 0 6 73 16 0 149 0 2 6 chain 135968 chr11 135086622 + 73774381 73775934 SVA_C 1631 + 0 1625 13439 13 7 0 7 0 1 829 5 1 134 0 4 13 1 2 10 4 81 530 chain 26698 chr11 135086622 + 73808639 73808937 AluSq10 312 + 0 297 46686 133 1 0 164 chain 3224 chr11 135086622 + 73915092 73915133 MIRb 242 + 79 122 97710 30 0 2 11 chain 21176 chr11 135086622 + 73926434 73926714 AluY 311 + 0 288 54914 21 0 8 23 8 7 73 0 1 155 chain 518397 chr11 135086622 + 74059664 74066074 L1PA5 6144 + 0 6144 2344 135 9 35 579 9 10 133 5 4 275 19 10 713 23 27 18 2 1 184 1 0 70 0 2 117 2 1 862 6 1 332 0 1 28 0 1 445 0 3 39 0 1 129 0 7 92 324 13 67 0 8 529 0 3 188 0 6 314 1 2 500 1 0 259 chain 24966 chr11 135086622 + 74077461 74077771 L1PA7 6471 + 6137 6453 49337 38 1 0 26 0 6 100 2 3 143 chain 152479 chr11 135086622 + 74082697 74084440 L1PA6 6164 + 4409 6162 12202 270 1 0 140 0 1 1254 0 10 78 chain 15210 chr11 135086622 + 74111691 74111899 MER30 238 + 0 238 62028 18 4 18 71 4 20 111 chain 112757 chr11 135086622 + 74115514 74118048 L1PB1 5432 + 3856 5427 16713 542 22 23 205 3 0 177 0 1 8 7 6 285 628 13 22 1 0 4 4 2 12 18 12 52 2 1 16 1 0 44 1 0 10 28 17 17 340 21 24 1 0 22 1 0 12 1 0 19 1 0 4 chain 23194 chr11 135086622 + 74163401 74163774 THE1C 375 + 0 375 52088 84 36 38 13 0 4 7 4 0 33 4 7 14 12 6 18 0 3 148 chain 26451 chr11 135086622 + 74190639 74191070 MSTB-int 1649 + 26 457 47051 127 1 0 100 76 74 17 5 8 105 chain 2555 chr11 135086622 + 74260678 74260759 MADE1 96 + 0 96 103352 20 38 53 23 chain 66013 chr11 135086622 + 74280899 74281614 L1PA3long 6157 + 5168 5887 24954 142 0 4 573 chain 115177 chr11 135086622 + 74327828 74329146 SVA_B 1603 + 44 1603 16358 440 0 1 116 5 42 103 0 162 40 1 42 613 chain 525940 chr11 135086622 + 74360441 74366372 L1PA5 6144 + 13 6144 2005 226 4 11 223 0 2 1362 0 1 57 0 4 428 0 156 448 1 0 256 0 19 167 0 9 300 2 0 564 0 1 1044 0 4 849 chain 5636 chr11 135086622 + 74399233 74399328 MADE1 96 + 0 96 82621 46 0 1 49 chain 8086 chr11 135086622 + 74481023 74481122 MER50 708 + 507 610 74666 70 0 4 29 chain 106823 chr11 135086622 + 74496892 74498411 Tigger4 2445 + 154 2360 17457 4 1 0 10 2 0 8 15 8 37 3 1 14 2 1 538 20 728 255 0 3 275 3 0 35 0 2 29 7 6 8 0 3 47 1 0 4 19 17 26 3 1 56 1 0 14 2 1 25 15 10 40 chain 278437 chr11 135086622 + 74513582 74517838 L1MA2 4263 + 4 4113 7477 15 1 0 35 0 8 43 2 0 6 11 12 38 3 1 92 1 0 79 1 0 26 19 21 78 0 1 19 28 26 43 230 0 505 6 12 45 1 3 92 0 1 115 1 94 13 10 1 5 0 3 282 0 2 57 0 3 67 0 3 18 0 4 14 0 3 85 9 0 113 0 1 4 1 0 118 4 19 415 6 4 40 36 4 291 1 0 54 19 20 187 7 8 13 0 21 181 0 5 6 1 0 4 30 17 85 6 3 75 1 0 146 3 0 88 21 20 14 12 14 12 2 1 9 1 0 92 7 0 47 1 0 8 chain 37815 chr11 135086622 + 74530967 74531429 LTR2 463 + 0 463 36195 362 12 13 88 chain 41282 chr11 135086622 + 74549959 74550508 MER41A 554 + 0 554 33798 87 5 6 79 1 0 110 1 0 145 1 2 39 3 8 78 chain 8853 chr11 135086622 + 74592317 74592434 MER44A 345 + 135 254 72856 14 3 5 100 chain 3921 chr11 135086622 + 74666111 74666162 L1MB7 1623 + 93 145 91972 18 0 1 33 chain 22239 chr11 135086622 + 74671203 74671448 AluYb8 318 + 69 312 53494 54 2 0 189 chain 7807 chr11 135086622 + 74782394 74782523 MER1B 344 + 135 263 75363 61 23 20 38 0 2 7 chain 79127 chr11 135086622 + 74797801 74798850 MER11C 1089 + 0 1072 21831 247 0 9 56 1 5 72 8 10 291 1 5 4 1 0 35 6 7 124 0 1 54 1 0 7 0 3 134 0 1 7 chain 152381 chr11 135086622 + 74825415 74829352 L1PA11 4918 + 2432 4517 12206 114 0 1 9 5 7 253 1860 29 196 2 0 401 0 4 6 3 2 14 0 1 225 34 18 72 2 1 37 0 4 81 0 4 101 4 0 87 1 0 61 0 1 89 1 0 79 8 4 24 0 2 36 1 0 5 26 24 51 2 0 13 1 0 20 4 0 9 chain 18535 chr11 135086622 + 74884748 74884977 L1PREC2 3366 + 1039 1268 58066 229 chain 486146 chr11 135086622 + 74887437 74892931 L1PA4 6152 + 1 5516 3512 949 0 4 394 4 13 90 0 4 87 0 1 421 0 1 419 0 3 790 1 0 2339 chain 150069 chr11 135086622 + 74900206 74902568 L1MA2 4263 + 1975 4058 12343 94 310 4 353 0 3 81 0 1 66 13 0 9 2 16 42 1 0 35 0 5 185 0 1 358 28 52 91 9 6 87 0 5 115 6 2 61 0 1 13 4 3 142 3 0 150 11 9 93 chain 18469 chr11 135086622 + 74946273 74946639 THE1D 372 + 4 372 58132 52 36 27 12 9 11 59 4 8 15 52 57 127 chain 5015 chr11 135086622 + 74952225 74952305 MADE1 96 - 0 96 85586 38 5 21 37 chain 29455 chr11 135086622 + 75018272 75018708 MLT2A1 477 + 0 477 42665 18 1 3 147 5 2 163 11 12 26 27 68 38 chain 124129 chr11 135086622 + 75018708 75020367 THE1B-int 1605 + 0 1598 14824 432 0 25 381 104 1 537 1 18 204 chain 8888 chr11 135086622 + 75037451 75037554 LTR13 1007 + 0 103 72800 103 chain 28528 chr11 135086622 + 75039923 75040289 LTR2 463 + 0 373 44072 101 12 13 107 0 5 142 0 1 4 chain 246654 chr11 135086622 + 75042302 75046679 Harlequin-int 5206 + 134 5197 8313 146 5 9 17 2 5 165 1 0 202 1 0 425 1 0 5 6 7 324 0 3 115 2 3 376 2 0 325 1343 2025 139 3 0 772 chain 32520 chr11 135086622 + 75046689 75047147 LTR2 463 + 0 463 39931 61 0 3 44 7 8 244 26 28 19 1 0 56 chain 78246 chr11 135086622 + 75060620 75061484 L1PA3long 6157 + 5278 6147 22038 6 0 4 693 0 1 165 chain 25089 chr11 135086622 + 75082476 75082800 L1PA16 3655 + 2516 2838 49137 104 1 0 49 6 5 164 chain 116649 chr11 135086622 + 75098024 75099502 LTR12C 1709 + 0 1709 16113 212 1 2 359 6 5 72 0 278 143 0 47 106 0 4 273 98 0 208 chain 28204 chr11 135086622 + 75106098 75106558 L1PA15 4387 + 3922 4366 44558 11 1 0 171 1 0 75 5 7 23 4 0 7 2 1 50 6 3 44 3 1 11 11 6 24 1 0 10 chain 469425 chr11 135086622 + 75119297 75124670 L1PA4 6152 + 6 5353 3876 727 0 9 299 0 2 213 1 2 585 45 0 94 0 1 437 0 1 220 0 1 586 1 0 69 0 1 33 0 1 692 0 1 136 0 2 1235 chain 8025 chr11 135086622 + 75160771 75160987 L1MB7 1623 + 1068 1265 74825 23 1 0 16 5 6 70 85 66 16 chain 25446 chr11 135086622 + 75228062 75228336 AluYa5 310 + 35 310 48563 61 0 1 213 chain 13959 chr11 135086622 + 75298091 75298249 L1PA6 6164 + 6003 6162 63648 7 0 1 151 chain 49724 chr11 135086622 + 75331313 75333160 MER4E1 777 + 12 765 29672 5 3 0 72 864 72 91 11 24 244 304 0 24 9 0 81 0 1 139 chain 29514 chr11 135086622 + 75331393 75331785 LTR7 482 + 0 474 42588 86 1 51 87 9 41 209 chain 21272 chr11 135086622 + 75392064 75392427 Tigger1 2417 + 2077 2417 54802 12 0 2 142 0 1 18 2 0 39 39 0 37 0 1 4 31 45 39 chain 5720 chr11 135086622 + 75535634 75535698 LTR12C 1709 + 1645 1709 82254 64 chain 4008 chr11 135086622 + 75547356 75547408 MER53 195 + 139 191 91391 52 chain 4460 chr11 135086622 + 75551473 75551540 MER96B 391 + 102 169 88560 4 1 0 50 1 2 11 chain 69725 chr11 135086622 + 75640555 75641319 L1PA4 6152 + 5212 5976 24064 764 chain 4800 chr11 135086622 + 75657482 75657545 MER20 218 + 113 178 86700 43 1 3 19 chain 9109 chr11 135086622 + 75677556 75677660 MER44A 345 + 104 208 72326 104 chain 4084 chr11 135086622 + 75721181 75721245 MIRb 242 + 97 160 90879 42 6 5 16 chain 23662 chr11 135086622 + 75742151 75742447 7SLRNA 320 + 24 318 51336 275 2 0 19 chain 556558 chr11 135086622 + 75748616 75754649 L1PA2 6032 + 3 6032 327 4729 0 1 1143 1 5 10 8 1 127 2 0 13 chain 5382 chr11 135086622 + 75760842 75760931 MER5A 189 + 30 119 83787 46 9 10 4 1 0 29 chain 6168 chr11 135086622 + 76038406 76038479 MER2 342 + 147 220 80457 73 chain 115332 chr11 135086622 + 76060390 76061823 LTR12C 1709 + 0 1709 16337 20 0 9 182 4 3 46 0 1 203 0 1 13 2 1 171 0 278 184 1 0 4 4 2 106 11 4 296 1 2 35 1 0 58 7 6 84 chain 8962 chr11 135086622 + 76145025 76145143 MSTB 430 + 1 120 72644 46 1 0 7 0 1 48 0 1 16 chain 6421 chr11 135086622 + 76220759 76220852 L1PA15 4387 + 3754 3845 79602 55 10 8 28 chain 6948 chr11 135086622 + 76235512 76235584 tRNA-Pro-CCY 72 + 0 72 77788 72 chain 8347 chr11 135086622 + 76250113 76250227 MER52A 1651 - 376 480 74035 34 10 0 70 chain 3979 chr11 135086622 + 76356611 76356694 MER2 342 + 94 182 91581 24 26 31 33 chain 25826 chr11 135086622 + 76390553 76390842 AluYc 301 + 0 287 47981 111 2 0 176 chain 29315 chr11 135086622 + 76463342 76463652 AluYb8 318 + 1 311 42853 310 chain 349036 chr11 135086622 + 76480619 76485383 L1P3 4156 + 0 4139 5916 228 15 0 14 5 19 61 1 0 74 325 0 8 3 0 248 1 0 873 0 1 230 1 0 506 1 0 305 0 1 61 0 1 71 0 4 591 2 1 403 298 0 132 0 1 168 1 3 103 2 0 5 2 1 26 chain 53522 chr11 135086622 + 76485754 76486407 L1PA7 6471 + 5819 6466 28389 6 6 0 641 chain 29667 chr11 135086622 + 76512244 76512651 MER75 514 + 0 514 42411 236 2 4 37 0 106 85 21 20 26 chain 4781 chr11 135086622 + 76530520 76530590 MADE1 96 + 0 96 86788 17 3 28 24 0 1 26 chain 175525 chr11 135086622 + 76564780 76566786 L1PA6 6164 + 4149 6162 10802 216 0 4 310 1 0 168 0 5 443 0 1 858 2 0 8 chain 121290 chr11 135086622 + 76593385 76595297 L1PA11 4918 + 2896 4508 15300 148 4 5 67 3 48 34 0 1 321 351 4 760 0 1 9 16 20 11 1 0 68 2 1 13 2 0 68 2 0 13 0 1 19 chain 50580 chr11 135086622 + 76619300 76619856 SVA_D 2077 + 1519 2077 29357 177 0 2 379 chain 9388 chr11 135086622 + 76683236 76683387 THE1D 372 + 2 153 71728 11 0 2 37 6 3 56 15 16 26 chain 84966 chr11 135086622 + 76711085 76712110 LTR5A 1029 + 0 1027 20626 147 1 0 176 25 0 8 0 25 122 0 2 481 0 1 65 chain 5006 chr11 135086622 + 76727677 76727768 MADE1 96 - 0 96 85629 36 19 24 36 chain 116691 chr11 135086622 + 76790797 76792491 THE1A-int 1579 + 0 1579 16102 25 1 0 144 18 18 101 0 1 204 7 2 46 10 14 101 2 1 111 3 4 26 122 1 191 1 9 225 16 14 32 4 1 167 0 5 119 1 0 17 chain 25740 chr11 135086622 + 76792491 76792853 THE1A 353 + 0 353 48107 250 13 12 37 13 5 49 chain 103733 chr11 135086622 + 76820829 76822026 SVA_D 2077 + 62 1740 17844 34 8 0 446 0 40 306 2 398 28 0 1 30 0 2 4 0 1 21 1 50 317 chain 10321 chr11 135086622 + 76833164 76833310 MSTB 430 + 253 407 69758 47 12 20 87 chain 166170 chr11 135086622 + 76908330 76910274 L1PA7 6471 + 4537 6461 11327 13 0 1 75 0 4 293 22 0 32 1 0 249 1 0 418 0 2 669 3 0 168 chain 143036 chr11 135086622 + 76913558 76915186 L1PA5 6144 + 4490 6132 12855 198 0 2 414 0 1 192 0 4 222 1 0 282 1 0 184 0 9 134 chain 546580 chr11 135086622 + 76963836 76969955 L1PA4 6152 + 8 6151 934 123 14 0 11 5 20 868 0 1 31 0 2 418 0 2 1284 0 2 901 0 17 1690 1 0 773 chain 7576 chr11 135086622 + 77019470 77019565 Tigger1 2417 + 1170 1264 75917 31 1 0 63 chain 15262 chr11 135086622 + 77226247 77226642 MLT1B 390 + 0 379 61963 28 5 0 29 0 10 23 10 11 9 1 0 5 10 11 5 1 0 43 127 106 99 chain 36193 chr11 135086622 + 77300001 77300453 LTR10F 562 + 0 550 37275 81 0 5 48 15 15 35 0 93 273 chain 458959 chr11 135086622 + 77326704 77331796 L1PA4 6152 + 1053 6151 4158 108 0 3 1788 0 2 746 0 1 1682 0 1 750 1 0 17 chain 10371 chr11 135086622 + 77461257 77461456 MLT2C1 407 + 10 209 69669 103 57 0 11 0 57 28 chain 153336 chr11 135086622 + 77489410 77491144 SVA_D 2077 + 0 2077 12157 5 1 0 11 1 0 6 1 0 6 1 0 625 0 37 189 1 0 38 3 138 175 0 176 38 0 1 625 1 0 7 chain 28508 chr11 135086622 + 77491557 77491976 L1M1 2793 + 2072 2504 44114 34 0 3 40 0 1 12 6 9 29 0 5 72 7 15 12 8 0 107 0 1 5 1 0 30 0 1 56 chain 20245 chr11 135086622 + 77492679 77493069 MSTA 426 + 26 426 56084 74 62 70 36 9 13 17 8 6 51 18 18 115 chain 38531 chr11 135086622 + 77522475 77523126 L1PA16 3655 + 2996 3619 35688 105 0 3 34 2 0 62 43 42 48 2 0 151 4 0 6 0 4 35 10 11 80 3 0 10 42 18 14 chain 39269 chr11 135086622 + 77570921 77571455 LTR61 567 + 1 567 35173 24 0 1 29 0 11 120 1 0 8 0 1 29 4 0 142 0 25 120 1 0 4 16 16 36 chain 39858 chr11 135086622 + 77575459 77575997 LTR61 567 + 0 565 34768 25 0 1 25 5 15 159 8 0 141 0 25 110 6 5 10 0 1 14 1 0 34 chain 29013 chr11 135086622 + 77576247 77576625 MER4A1 472 + 27 428 43302 91 0 2 110 5 26 172 chain 175329 chr11 135086622 + 77581344 77585153 MER4-int 2692 + 1 2692 10814 10 1 0 25 2 0 63 1 0 25 7 10 11 0 292 92 7 20 100 592 0 73 1 0 169 6 0 28 0 1 133 0 5 15 37 0 177 1 0 64 5 0 15 2 0 94 0 1 28 0 1 197 1 0 102 0 1 29 0 11 97 0 2 54 317 0 6 1 0 137 0 5 109 7 6 22 5 4 34 1 4 46 492 0 173 0 3 17 1 3 177 chain 26138 chr11 135086622 + 77639497 77639793 AluSp 311 + 12 309 47511 28 0 1 268 chain 32159 chr11 135086622 + 77640786 77641220 MER57A1 433 + 0 433 40224 261 24 23 149 chain 3514 chr11 135086622 + 77652800 77652844 L1MB7 1623 + 66 110 95140 44 chain 21586 chr11 135086622 + 77653931 77654180 AluSp 311 + 28 277 54380 249 chain 30680 chr11 135086622 + 77656269 77656848 MER51A 677 + 0 661 41400 49 19 20 15 1 0 11 1 0 30 3 0 16 1 0 11 27 29 11 19 0 38 46 157 145 10 11 40 8 0 78 chain 7702 chr11 135086622 + 77691649 77691749 HY3 101 + 0 100 75625 100 chain 180262 chr11 135086622 + 77796113 77798302 L1PA7 6471 + 3911 6105 10578 390 1 0 16 0 3 635 1 0 134 1 0 532 0 3 68 5 8 136 1 0 124 1 0 79 0 1 65 chain 29744 chr11 135086622 + 77830251 77830711 LTR3A 482 + 27 482 42318 79 3 4 5 0 1 28 0 1 75 61 52 76 0 1 59 1 0 13 1 2 59 chain 213615 chr11 135086622 + 77886785 77889177 L1PA3long 6157 + 2830 5749 9217 371 4 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36218 chr11 135086622 + 78080835 78081288 LTR7C 471 + 0 460 37259 150 0 8 138 3 0 143 0 2 19 chain 33203 chr11 135086622 + 78086562 78087023 LTR7C 471 + 0 462 39348 152 0 8 11 43 35 68 1 0 165 0 2 21 chain 117312 chr11 135086622 + 78272171 78273714 THE1B-int 1605 + 2 1586 15997 39 21 23 93 0 1 13 0 1 4 14 13 241 1 26 36 0 1 349 0 3 75 3 5 269 13 14 253 1 2 9 0 5 109 chain 97040 chr11 135086622 + 78301724 78303185 L1PB1 5432 + 3996 5423 18653 25 0 2 62 2 3 120 0 2 156 2 1 162 0 6 86 0 1 172 17 22 253 4 8 24 28 7 6 1 0 20 1 0 13 1 0 11 17 12 49 1 0 12 8 7 26 27 22 16 37 25 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 19 chain 257229 chr11 135086622 + 78482231 78485401 L1PA8 5853 + 2677 5853 8052 204 2 1 47 7 12 66 0 1 212 0 1 106 1 3 419 0 1 465 3 1 107 0 2 546 0 1 138 2 0 47 0 6 204 4 5 41 0 1 62 2 0 18 0 2 75 24 20 24 0 1 48 1 0 44 2 0 70 12 10 52 2 1 19 1 0 93 chain 3831 chr11 135086622 + 78505970 78506030 L1ME1 1623 + 944 1002 92628 40 0 3 9 5 0 6 chain 5168 chr11 135086622 + 78525057 78525213 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57221 105 9 11 60 44 42 10 11 12 66 24 23 39 chain 17532 chr11 135086622 + 78864274 78864462 AluYa5 310 + 122 310 59201 188 chain 104232 chr11 135086622 + 78879044 78880470 SVA_A 1864 + 421 1864 17794 20 37 0 16 6 8 112 0 2 28 3 0 45 14 11 55 3 0 47 0 2 35 3 0 74 32 65 82 3 0 48 1 74 16 40 0 41 3 0 662 chain 62900 chr11 135086622 + 78977605 78978347 L1PA7 6471 + 5711 6454 25655 515 0 1 227 chain 11992 chr11 135086622 + 79039645 79039799 L1PA8 5853 + 5701 5853 66847 39 2 1 19 1 0 93 chain 7075 chr11 135086622 + 79073678 79073832 MIR 256 + 79 256 77348 55 0 21 35 49 51 15 chain 29168 chr11 135086622 + 79124202 79124577 MLT2A1 477 + 0 378 43101 163 6 7 11 0 1 20 0 1 175 chain 445075 chr11 135086622 + 79124974 79137922 HERVL-int 5654 + 0 5654 4471 51 7 8 532 2 1 56 0 1 67 2 0 154 0 5 163 0 2 293 0 1 381 2 0 61 0 1 18 1 0 292 1 0 4 1 2 183 1 2 627 0 1 171 1 4 39 0 12 468 4 0 114 13 11 59 6 3 47 0 1 80 7330 0 22 0 1 249 2 7 563 0 6 114 18 21 266 0 1 60 7 13 416 chain 353248 chr11 135086622 + 79130844 79136157 L1PB1 5432 + 618 5404 5876 304 7 6 53 6 9 405 1 0 7 2 0 5 18 14 124 0 4 14 14 17 133 0 2 92 0 3 28 311 0 338 6 5 179 3 2 132 6 0 33 4 5 304 8 6 140 1 2 119 3 1 10 0 1 85 0 6 522 4 7 466 1 3 93 0 1 319 5 6 9 4 0 180 34 29 262 0 3 10 242 45 6 2 0 53 2 1 12 7 6 42 1 0 14 3 0 8 15 6 18 8 5 14 2 0 24 1 0 22 1 0 12 chain 32302 chr11 135086622 + 79137922 79138339 MLT2A1 477 + 0 411 40112 169 4 1 11 0 1 21 0 1 181 4 0 18 1 0 8 chain 60198 chr11 135086622 + 79142974 79143678 L1PA5 6144 + 5432 6135 26321 586 6 5 112 chain 142318 chr11 135086622 + 79191113 79192770 SVA_D 2077 + 0 2077 12910 19 1 0 16 0 22 498 0 40 281 8 200 15 0 2 96 0 107 51 2 0 5 0 49 365 1 0 108 1 0 49 0 20 126 7 0 8 chain 27489 chr11 135086622 + 79193935 79194288 THE1A 353 + 0 353 45595 111 1 0 64 1 0 21 0 2 155 chain 125745 chr11 135086622 + 79194310 79195862 THE1A-int 1579 + 22 1579 14596 215 3 4 230 0 4 365 0 1 183 4 1 257 0 2 295 chain 23651 chr11 135086622 + 79206504 79206841 THE1A 353 + 0 353 51356 109 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32 0 1 42 5 4 14 6 10 235 chain 5200 chr11 135086622 + 79725351 79725416 L1M1 2793 + 2559 2624 84673 65 chain 201825 chr11 135086622 + 79791245 79793546 L1PA5 6144 + 1794 4118 9646 503 0 3 863 1 2 350 0 6 268 0 13 316 chain 88696 chr11 135086622 + 79804041 79805074 SVA_B 1603 + 44 1597 19907 25 1 6 428 0 514 326 0 1 253 chain 11581 chr11 135086622 + 79805094 79805240 L1PB4 2604 + 2376 2522 67602 146 chain 511206 chr11 135086622 + 79864413 79870845 L1PA7 6471 + 0 6461 2700 61 0 7 175 0 1 168 6 0 61 1 0 104 3 0 165 0 5 354 0 1 150 0 19 186 14 13 90 0 1 267 0 1 308 1 0 378 0 4 111 4 2 198 0 1 672 1 0 114 3 2 897 6 0 152 0 4 108 3 0 175 2 0 58 0 1 205 0 1 13 1 0 277 11 11 27 2 0 73 8 7 161 0 5 106 5 8 34 5 11 508 chain 5300 chr11 135086622 + 79884952 79885032 MER20 218 + 0 80 84196 13 2 3 4 1 0 60 chain 23703 chr11 135086622 + 79901002 79901449 MER4D1 891 + 8 468 51275 32 1 2 10 13 14 23 39 35 67 5 7 73 0 4 19 26 36 84 2 1 15 1 0 24 0 1 13 chain 4235 chr11 135086622 + 79908142 79908191 MLT1G 592 + 232 281 89913 49 chain 79765 chr11 135086622 + 79961617 79962499 L1PA3long 6157 + 5272 6157 21677 865 0 3 17 chain 22558 chr11 135086622 + 79999326 79999653 L1PA8 5853 + 5534 5853 53032 30 2 1 43 2 0 70 2 1 9 2 1 17 1 0 37 1 0 17 1 0 93 chain 79144 chr11 135086622 + 80061723 80062668 L1PA7 6471 + 5510 6459 21824 84 0 5 15 2 0 705 3 4 136 chain 62829 chr11 135086622 + 80093333 80094063 L1PA5 6144 + 5412 6142 25673 577 0 7 10 7 0 136 chain 446635 chr11 135086622 + 80109750 80115511 L1PA8 5853 + 108 5852 4446 31 0 2 89 23 19 50 21 9 325 9 12 11 8 1 6 0 1 119 0 3 93 0 3 325 4 0 6 0 4 267 0 3 539 4 2 151 2 0 594 0 4 130 2 0 5 0 2 5 17 10 292 12 4 166 1 2 570 0 1 265 2 7 211 0 3 428 1 0 4 1 2 125 2 0 223 0 1 45 0 2 136 0 1 147 1 0 44 3 1 70 1 0 65 1 0 16 1 0 92 chain 52974 chr11 135086622 + 80139109 80139727 LTR12_ 688 + 0 673 28586 121 0 49 55 0 5 215 0 1 227 chain 29406 chr11 135086622 + 80190845 80191223 THE1C 375 + 0 374 42724 125 3 0 225 1 0 24 chain 33106 chr11 135086622 + 80197286 80197756 LTR3B_ 500 + 6 482 39430 139 16 17 138 1 2 40 7 9 45 8 10 76 chain 15785 chr11 135086622 + 80206280 80206455 L1HS 6032 + 5856 6031 61302 175 chain 112606 chr11 135086622 + 80257379 80258818 LTR12C 1709 + 0 1709 16734 282 1 10 10 9 0 162 0 2 149 1 2 33 0 278 182 1 0 7 3 1 96 21 14 393 5 4 84 chain 49126 chr11 135086622 + 80268095 80268636 L1PA3long 6157 + 4991 5532 29898 541 chain 52620 chr11 135086622 + 80273280 80273909 L1PA6 6164 + 5178 5807 28694 124 0 1 101 11 10 393 chain 52720 chr11 135086622 + 80278562 80279160 L1PA4 6152 + 5541 6138 28661 277 1 0 320 chain 25368 chr11 135086622 + 80302591 80302931 THE1B 368 + 0 353 48672 44 5 20 108 2 1 31 4 5 91 2 0 53 chain 19603 chr11 135086622 + 80307306 80307647 L1PA14 3548 + 3150 3485 56904 43 0 1 22 10 20 96 14 9 38 4 2 12 5 3 18 1 0 41 6 0 10 1 0 20 chain 66970 chr11 135086622 + 80426067 80426818 L1PA5 6144 + 5391 6140 24709 744 2 0 5 chain 54550 chr11 135086622 + 80428316 80428916 L1PA2 6032 + 5430 6029 28026 576 1 0 23 chain 17628 chr11 135086622 + 80433763 80434092 L1PA15 4387 + 4037 4356 59092 67 1 0 26 1 0 55 1 0 25 12 7 36 20 17 21 37 38 27 chain 5144 chr11 135086622 + 80486683 80486770 MIR 256 + 82 169 84937 49 7 10 8 3 0 20 chain 487159 chr11 135086622 + 80505265 80511240 L1PA7 6471 + 11 6470 3491 397 22 0 270 5 4 319 5 4 579 0 480 575 0 2 856 1 0 39 6 23 450 3 0 359 0 1 299 0 4 952 1 4 246 25 28 404 3 4 128 0 1 31 chain 7240 chr11 135086622 + 80546292 80546399 MER4A1 472 + 0 110 76837 15 6 9 86 chain 24702 chr11 135086622 + 80567704 80568007 THE1A 353 + 0 302 49729 109 2 1 192 chain 10283 chr11 135086622 + 80684427 80684548 L1PA8 5853 + 5179 5300 69843 121 chain 5465 chr11 135086622 + 80697914 80697982 MER41A 554 + 397 466 83380 47 0 1 21 chain 12874 chr11 135086622 + 80719202 80719425 MER30 238 + 0 238 65297 15 20 21 73 4 21 65 10 7 36 chain 115870 chr11 135086622 + 80792594 80793898 L1PA4 6152 + 2572 3877 16265 636 0 1 668 chain 436081 chr11 135086622 + 80798203 80803934 L1PA8 5853 + 108 5853 4643 122 23 19 50 21 9 461 17 0 4 9 0 8 22 49 254 28 29 455 0 1 359 0 1 92 17 0 6 1 0 116 0 17 728 7 6 67 0 1 4 1 0 168 6 7 787 11 21 15 1 0 242 3 5 371 1 0 75 1 13 340 7 5 77 1 0 4 22 28 4 1 0 389 13 13 34 1 0 46 2 0 60 24 32 37 3 2 19 2 1 92 chain 2821 chr11 135086622 + 80870371 80870448 L1MA3 4352 + 4275 4322 101514 7 1 0 6 1 0 25 28 0 9 chain 391572 chr11 135086622 + 80903766 80909204 L1PB1 5432 + 78 5420 5297 327 15 3 110 0 1 93 0 1 142 0 4 648 8 11 158 6 0 45 6 6 89 25 8 289 3 0 216 0 5 141 0 4 117 2 0 346 1 0 88 0 4 28 13 15 359 0 1 22 26 27 128 0 1 204 38 32 211 39 40 75 6 7 297 1 0 4 0 1 241 3 0 87 1 0 101 4 0 19 4 7 76 0 12 85 0 2 20 22 28 5 0 2 32 7 2 11 56 2 20 1 0 9 1 0 11 4 0 12 2 0 48 5 4 14 1 0 44 1 0 16 55 35 15 2 0 24 1 0 21 2 1 12 1 0 16 chain 46803 chr11 135086622 + 80921306 80921902 LTR10C 591 + 0 576 30727 158 31 5 352 0 1 19 1 6 35 chain 259825 chr11 135086622 + 81035416 81039929 HERVK22-int 3844 + 0 3844 7975 43 3 0 85 2 0 268 0 1 869 9 10 6 4 0 7 0 1 73 16 8 9 0 8 173 0 8 248 0 5 274 16 15 65 4 5 42 0 5 11 10 5 6 0 6 92 0 1 4 0 3 190 0 1 497 1 0 8 0 1 65 8 6 18 1 0 35 1 0 15 8 6 33 21 16 37 50 37 12 14 8 5 2 0 10 1 0 7 69 48 15 15 11 29 1 0 4 817 192 86 8 7 31 2 0 58 chain 20189 chr11 135086622 + 81062125 81062423 MER51B 395 + 97 395 56151 93 1 0 13 0 1 23 6 5 18 13 14 131 chain 9378 chr11 135086622 + 81122409 81122514 LTR7 482 + 377 482 71748 105 chain 257928 chr11 135086622 + 81122516 81125820 HERVH-int 3825 + 0 3825 8027 333 2 1 52 53 0 13 44 352 12 0 2 15 2 0 6 11 16 424 15 0 205 9 0 39 1 0 39 0 1 175 5 33 283 1 0 19 0 3 63 5 10 55 0 31 904 0 3 31 9 219 128 0 1 5 2 0 289 5 13 50 chain 28684 chr11 135086622 + 81127077 81127454 LTR7 482 + 1 446 43824 67 9 47 109 0 1 24 2 0 17 0 31 149 chain 13034 chr11 135086622 + 81208094 81208350 LTR12C 1709 + 941 1203 65059 92 42 89 54 41 0 27 chain 2806 chr11 135086622 + 81208290 81208323 LTR12C 1709 + 1018 1051 89820 33 chain 21424 chr11 135086622 + 81228719 81228958 L1PA3long 6157 + 5918 6157 54606 239 chain 61376 chr11 135086622 + 81260824 81261498 L1PA3long 6157 + 5483 6157 26014 674 chain 76166 chr11 135086622 + 81284946 81285980 MER11A 1151 + 0 1151 22521 58 3 102 134 4 0 32 1 3 59 0 1 51 3 4 90 12 13 137 0 1 151 1 0 24 44 1 88 0 60 142 chain 3025 chr11 135086622 + 81349737 81349818 MER3 215 + 7 88 99540 20 31 31 30 chain 71295 chr11 135086622 + 81357914 81358785 L1PA7 6471 + 5490 6369 23696 131 0 3 76 0 2 596 10 11 10 2 4 46 chain 58823 chr11 135086622 + 81408422 81409103 L1PA7 6471 + 5788 6468 26733 98 0 1 4 1 0 459 1 0 118 chain 4395 chr11 135086622 + 81449922 81449971 MLT1A 405 + 294 343 88912 49 chain 26943 chr11 135086622 + 81454214 81454516 AluYg6 310 + 0 296 46351 126 5 0 98 1 0 72 chain 83667 chr11 135086622 + 81455863 81456934 L1PA6 6164 + 5105 6162 20880 116 0 1 85 0 11 72 1 3 78 4 0 121 13 11 386 5 4 108 24 5 50 2 0 6 chain 114894 chr11 135086622 + 81501162 81502557 L1PA6 6164 + 4753 6160 16400 456 0 4 102 1 0 89 3 6 73 0 1 20 0 3 154 2 0 91 0 5 76 0 1 169 16 15 135 1 0 7 chain 4910 chr11 135086622 + 81522013 81522074 MER2B 336 + 169 230 86109 61 chain 15949 chr11 135086622 + 81550642 81550870 L1P4 1494 + 1058 1285 61092 76 9 8 143 chain 59649 chr11 135086622 + 81600151 81600806 L1PA3long 6157 + 4776 5431 26473 655 chain 43016 chr11 135086622 + 81634181 81634722 MER41A 554 + 0 554 32765 223 0 7 39 0 1 245 0 5 34 chain 54319 chr11 135086622 + 81701885 81702596 L1PA8A 6298 + 4698 5416 28116 95 3 7 21 5 0 383 0 1 59 7 14 138 chain 7814 chr11 135086622 + 81729775 81729912 THE1D-int 1627 + 0 133 75333 12 0 2 24 29 23 72 chain 30550 chr11 135086622 + 81769941 81770397 LTR7 482 + 0 475 41524 35 0 1 65 15 14 110 6 36 104 13 1 53 13 14 42 chain 23486 chr11 135086622 + 81802231 81802628 LTR7 482 + 0 467 51611 69 6 95 16 51 0 44 8 40 96 2 1 5 0 1 100 chain 21769 chr11 135086622 + 81806219 81806554 LTR7 482 + 0 470 54141 69 6 95 48 0 11 40 1 32 10 0 3 4 1 0 74 16 18 66 chain 312619 chr11 135086622 + 81806568 81810455 HERVH-int 3825 + 0 3825 6557 333 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81948900 L1PA5 6144 + 5831 6144 45314 313 chain 25883 chr11 135086622 + 81951350 81951689 LTR2 463 + 122 462 47893 237 15 16 87 chain 234931 chr11 135086622 + 81953217 81956221 Harlequin-int 5206 + 135 4020 8602 14 2 0 221 4 0 112 3 0 404 0 778 295 0 6 330 1 0 265 13 7 175 5 11 307 0 3 318 7 6 20 2 0 17 32 41 101 0 1 4 10 105 12 1 2 108 22 23 199 chain 27135 chr11 135086622 + 81956494 81956834 LTR2 463 + 122 463 46071 240 12 13 88 chain 34591 chr11 135086622 + 82025407 82025852 LTR7 482 + 0 476 38293 101 15 14 151 0 31 68 1 2 109 chain 261292 chr11 135086622 + 82025860 82029256 HERVH-int 3825 + 0 3825 7933 163 0 1 168 5 4 63 76 21 16 38 322 5 0 2 15 2 0 7 3 8 93 24 24 274 10 7 30 15 0 157 0 1 50 9 0 24 0 2 1635 0 3 25 8 218 198 0 3 75 0 3 208 chain 10596 chr11 135086622 + 82030558 82030789 LTR7 482 + 0 230 69236 76 61 10 15 16 66 63 chain 18204 chr11 135086622 + 82030789 82031014 LTR7 482 + 261 482 58457 46 0 1 47 7 2 125 chain 459527 chr11 135086622 + 82119965 82125316 L1PA4 6152 + 12 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135086622 + 82313500 82314356 L1PA8 5853 + 5066 5853 27198 11 1 0 9 1 0 84 8 9 189 1 0 114 10 4 78 1 0 44 2 0 6 58 3 62 8 7 54 3 2 18 1 0 93 chain 76648 chr11 135086622 + 82318441 82319365 L1PA7 6471 + 5543 6469 22405 78 1 0 298 0 1 478 2 0 5 0 2 51 0 2 11 chain 268774 chr11 135086622 + 82343196 82346278 L1PA5 6144 + 1568 6132 7741 945 5 0 556 2 0 210 1 0 762 0 1 244 0 1487 85 1 3 271 chain 32439 chr11 135086622 + 82353066 82353448 L1PA7 6471 + 6087 6466 40001 372 3 0 7 chain 23356 chr11 135086622 + 82367846 82368218 L1PA17 2846 + 2333 2693 51848 17 2 0 152 24 15 15 2 1 99 1 0 18 1 0 26 3 5 12 chain 28788 chr11 135086622 + 82372415 82372786 MLT2A1 477 + 0 379 43652 13 0 3 126 0 1 25 1 5 206 chain 20058 chr11 135086622 + 82388170 82388498 THE1B 368 + 8 367 56300 36 11 28 100 10 9 17 30 45 124 chain 4434 chr11 135086622 + 82404372 82404455 LTR12C 1709 + 785 1068 88705 24 1 82 18 5 124 35 chain 3395 chr11 135086622 + 82404464 82404506 LTR12C 1709 + 795 837 96119 42 chain 14375 chr11 135086622 + 82413387 82413538 AluYb8 318 + 157 308 63075 151 chain 14824 chr11 135086622 + 82435304 82435503 L1PA8 5853 + 5658 5853 62489 21 1 0 9 1 0 52 3 2 18 1 0 93 chain 6008 chr11 135086622 + 82442057 82442140 LTR43B 570 + 212 297 81047 28 1 2 50 0 1 4 chain 19508 chr11 135086622 + 82477328 82477621 MER4A1 472 + 0 316 57013 33 1 0 147 18 19 17 1 2 7 0 21 45 2 3 22 chain 130240 chr11 135086622 + 82500976 82502534 LTR12C 1709 + 0 1709 14007 266 0 1 169 0 1 262 0 159 253 1 0 6 2 0 107 0 4 182 11 0 299 chain 26067 chr11 135086622 + 82548724 82549447 THE1C 375 + 0 363 47634 11 4 5 87 377 17 229 1 0 14 chain 26833 chr11 135086622 + 82581483 82581812 L1PA7 6471 + 6140 6470 46496 106 0 1 223 chain 31559 chr11 135086622 + 82624502 82624887 MLT2A1 477 + 0 379 40694 169 4 1 153 3 0 56 chain 126923 chr11 135086622 + 82625687 82627202 HERV9-int 5642 + 3774 5283 14424 26 3 0 413 2 0 771 1 2 4 1 0 240 1 0 53 chain 123455 chr11 135086622 + 82653227 82654785 THE1A-int 1579 + 0 1572 14948 305 0 6 343 0 3 25 1 0 20 1 0 151 0 7 116 0 1 29 2 1 293 0 1 73 1 0 198 chain 65159 chr11 135086622 + 82662507 82663239 L1PA5 6144 + 5411 6144 25146 399 0 1 333 chain 62112 chr11 135086622 + 82735560 82736303 L1PA5 6144 + 5397 6139 25842 305 14 0 7 0 1 189 5 17 223 chain 111046 chr11 135086622 + 82745529 82748568 L1MA2 4263 + 1924 4111 16931 46 1 0 41 0 1 117 7 3 106 0 1 4 1 0 77 8 17 148 0 1 155 1472 632 52 1 0 7 0 1 251 6 2 76 1 0 147 3 0 129 29 27 93 7 0 47 1 0 6 chain 26962 chr11 135086622 + 82763155 82763552 LTR15 485 + 23 452 46318 79 0 1 46 0 2 23 0 2 62 1 2 36 0 4 34 1 8 9 6 22 33 1 2 40 0 1 8 1 0 5 2 0 10 chain 129535 chr11 135086622 + 82776696 82778748 L1M1 2793 + 660 2697 14093 33 130 110 28 2 0 8 1 0 50 41 35 70 1 0 4 0 1 5 1 0 13 0 2 17 1 0 58 0 2 83 1 0 23 0 7 41 4 0 12 1 0 6 4 0 5 2 0 101 0 1 231 0 1 287 0 2 46 9 14 27 1 5 8 0 1 11 0 4 42 24 26 22 0 3 280 5 6 46 4 0 191 1 0 20 13 11 15 1 2 9 1 0 12 chain 47610 chr11 135086622 + 82818360 82818939 LTR22 571 + 0 571 30434 78 1 0 174 11 4 315 chain 20524 chr11 135086622 + 82855656 82856023 L1PA16 3655 + 2892 3261 55751 12 0 4 14 1 0 60 8 10 13 0 1 74 3 0 18 50 51 52 1 0 30 1 0 30 chain 27103 chr11 135086622 + 82876456 82876809 THE1A 353 + 0 353 46122 81 3 4 25 1 0 243 chain 130985 chr11 135086622 + 82876809 82878379 THE1A-int 1579 + 0 1577 13928 306 1 2 132 0 2 90 0 1 75 1 2 366 0 1 306 1 2 292 chain 16116 chr11 135086622 + 82878381 82878580 THE1A 353 + 0 203 60876 111 0 3 60 0 1 28 chain 27515 chr11 135086622 + 82966198 82966497 AluYk11 308 + 5 304 45563 299 chain 14280 chr11 135086622 + 82971265 82971528 LTR12C 1709 + 650 837 63221 62 0 2 88 78 0 35 chain 27089 chr11 135086622 + 83000771 83001070 AluYd8 298 + 0 293 46140 106 6 0 187 chain 6543 chr11 135086622 + 83029749 83029827 L1PB2 3958 + 3761 3838 79183 14 1 0 63 chain 23279 chr11 135086622 + 83040317 83040610 AluSp 311 + 11 300 51961 57 3 0 176 1 0 56 chain 2827 chr11 135086622 + 83061277 83061316 Ricksha_c 1012 + 555 595 101425 20 0 2 7 1 0 11 chain 134533 chr11 135086622 + 83132590 83134174 SVA_C 1631 + 0 1608 13591 17 2 0 7 4 0 11 1 2 800 0 42 31 6 3 42 3 0 8 1 0 39 2 0 5 2 1 10 1 0 233 3 1 356 chain 49249 chr11 135086622 + 83176269 83176844 L1PA6 6164 + 5588 6161 29849 428 1 0 131 1 0 14 chain 24341 chr11 135086622 + 83189342 83189629 AluYc3 301 + 0 291 50262 119 0 2 82 0 2 86 chain 42669 chr11 135086622 + 83191980 83192491 HERV1_LTRb 511 + 0 511 32961 88 2 0 127 0 1 279 0 1 15 chain 36580 chr11 135086622 + 83264695 83265098 L1PA3long 6157 + 5734 6138 37024 390 0 1 13 chain 510922 chr11 135086622 + 83266136 83272255 L1PA6 6164 + 0 6162 2724 236 0 2 279 0 2 48 1 0 220 0 17 318 11 7 17 0 2 241 0 1 149 0 4 28 0 2 281 1 6 353 0 2 110 4 0 433 6 0 386 61 21 5 1 0 10 12 11 4 1 0 144 5 7 359 9 11 179 0 1 275 0 4 124 0 1 72 1 3 199 0 25 588 0 1 104 0 4 15 0 5 657 1 7 32 1 5 21 0 6 9 1 0 98 0 2 9 chain 41294 chr11 135086622 + 83337535 83338396 L1PA16 3655 + 2816 3578 33788 5 0 1 82 1 0 18 17 24 11 17 19 13 5 6 88 1 0 135 151 29 43 2 0 23 63 64 108 4 19 74 chain 35860 chr11 135086622 + 83367566 83368081 LTR10G 522 + 0 522 37495 17 0 8 62 11 4 119 14 23 104 24 18 5 0 2 87 0 2 61 1 0 10 chain 320997 chr11 135086622 + 83382699 83386812 L1P3 4156 + 3 4139 6387 45 23 26 175 14 13 27 7 6 27 1 0 87 1 0 79 0 24 119 0 1 576 1 5 133 23 21 4 0 1 6 1 0 249 0 1 358 2 0 272 1 0 496 0 4 113 0 1 19 0 3 199 0 4 58 1 0 103 15 0 15 4 5 161 0 3 104 0 4 20 7 9 242 9 5 281 2 0 9 1 0 23 chain 137376 chr11 135086622 + 83395764 83397298 L1P1 4361 + 2506 4041 13310 744 0 1 790 chain 2975 chr11 135086622 + 83402253 83402285 L1MC5 759 + 683 715 100099 32 chain 20233 chr11 135086622 + 83417157 83417445 L1PA15 4387 + 3894 4179 56101 31 12 11 168 1 0 26 1 0 49 chain 28326 chr11 135086622 + 83419143 83419533 LTR7 482 + 9 470 44374 60 10 48 107 8 40 122 0 2 39 1 0 43 chain 210343 chr11 135086622 + 83419547 83422726 HERVH-int 3825 + 0 3565 9344 333 1 0 77 11 10 37 79 75 13 0 1 12 174 192 28 1 0 99 10 9 340 15 0 204 9 0 142 5 0 114 23 50 45 64 49 174 1 5 15 0 3 59 5 10 270 4 15 421 14 384 57 18 17 166 7 13 9 7 1 116 chain 32650 chr11 135086622 + 83430184 83430602 PABL_B 668 + 0 427 39806 37 6 8 233 1 0 57 3 11 81 chain 10405 chr11 135086622 + 83499643 83499774 MLT2A1 477 + 253 385 69603 37 0 1 94 chain 32193 chr11 135086622 + 83576923 83577317 MLT2A1 477 + 0 397 40196 142 0 1 26 0 4 208 6 4 12 chain 551312 chr11 135086622 + 83587648 83593656 L1PA2 6032 + 21 6031 652 236 1 0 121 0 8 478 6 0 1601 0 1 3565 chain 27095 chr11 135086622 + 83620609 83620894 AluYa5 310 + 21 306 46133 285 chain 3848 chr11 135086622 + 83622234 83622303 MER45A 178 + 109 178 92517 15 6 7 21 1 0 26 chain 4596 chr11 135086622 + 83649722 83649775 LTR33A_ 513 + 124 177 87812 53 chain 26183 chr11 135086622 + 83714811 83715128 L1PA7 6471 + 5860 6178 47454 204 4 5 68 1 0 18 0 1 22 chain 4915 chr11 135086622 + 83743956 83744059 LTR67B 553 + 54 119 86086 54 38 0 11 chain 80848 chr11 135086622 + 83745814 83746735 L1PA5 6144 + 5216 6142 21461 81 0 4 95 3 4 742 chain 121323 chr11 135086622 + 83859179 83860742 THE1B-int 1605 + 17 1605 15291 249 1 0 166 0 29 169 15 9 298 0 1 129 6 7 473 0 1 57 chain 20705 chr11 135086622 + 83860755 83861068 THE1B 368 + 13 366 55492 31 11 26 102 4 3 97 4 22 12 3 11 49 chain 28433 chr11 135086622 + 83862041 83862652 L1MA3 4352 + 3679 4259 44218 86 0 2 68 13 11 181 2 0 21 185 160 23 0 3 1 7 0 24 chain 555498 chr11 135086622 + 83883955 83890123 L1PA3long 6157 + 1 6157 383 430 1 0 1009 1 0 879 0 1 2320 0 1 102 6 0 872 2 0 209 4 3 316 3 0 14 chain 2599 chr11 135086622 + 83941124 83941234 MER53 195 - 58 170 102999 19 64 65 22 0 1 5 chain 25879 chr11 135086622 + 83942869 83943201 THE1B 368 + 0 368 47898 44 0 15 113 1 0 20 2 0 21 0 24 131 chain 60808 chr11 135086622 + 83987128 83987796 L1PA3long 6157 + 4427 5095 26155 668 chain 8153 chr11 135086622 + 84023617 84023748 Tigger2b_Pri 1066 + 60 189 74514 20 1 0 62 15 14 33 chain 13260 chr11 135086622 + 84033931 84034085 AluSp 311 + 132 286 64689 154 chain 67500 chr11 135086622 + 84051014 84051780 L1PA4 6152 + 5381 6152 24569 620 0 1 140 0 4 6 chain 18305 chr11 135086622 + 84052433 84052696 L1PA11 4918 + 4254 4511 58354 5 0 2 70 2 0 62 2 1 13 2 0 68 7 5 8 1 0 23 chain 60671 chr11 135086622 + 84064849 84065690 L1PA15 4387 + 3301 4137 26184 512 24 22 53 2 0 44 1 0 121 5 6 46 1 0 9 0 1 15 1 0 7 chain 2127 chr11 135086622 + 84201680 84201791 L1PA11 4918 + 3536 3657 105682 64 0 10 47 chain 18124 chr11 135086622 + 84210337 84210544 L1PA2 6032 + 5820 6032 58542 192 1 6 14 chain 3962 chr11 135086622 + 84218738 84218846 MER20 218 + 39 148 91682 17 47 48 44 chain 7385 chr11 135086622 + 84233115 84233263 MER50 708 + 0 140 76434 43 33 21 36 8 12 28 chain 73334 chr11 135086622 + 84278927 84279844 L1PA7 6471 + 5416 6345 23253 52 0 5 148 1 0 82 0 1 66 4 8 19 0 4 508 6 0 7 0 5 24 chain 60706 chr11 135086622 + 84301257 84302349 L1PA7 6471 + 5685 6465 26173 15 1 4 92 311 2 44 13 3 461 10 11 129 0 6 7 3 0 6 chain 123565 chr11 135086622 + 84365812 84367203 L1HS 6032 + 1363 2754 14919 715 0 2 444 2 0 230 chain 26188 chr11 135086622 + 84442329 84442706 L1PA7 6471 + 6103 6466 47446 28 0 1 16 0 7 153 13 11 105 22 1 26 0 1 14 chain 27333 chr11 135086622 + 84512758 84513149 L1PA8 5853 + 5465 5853 45782 99 1 0 45 2 0 69 2 1 61 2 1 17 11 10 34 2 5 46 chain 11820 chr11 135086622 + 84526551 84526774 MER44A 345 + 83 307 67169 8 2 0 10 0 2 57 5 11 47 33 28 61 chain 128775 chr11 135086622 + 84539703 84541187 L1PA5 6144 + 4629 6130 14183 138 0 16 511 6 5 146 1 2 24 0 1 658 chain 23416 chr11 135086622 + 84576895 84577223 THE1A 353 + 0 329 51732 80 3 5 44 1 2 11 1 0 56 1 0 131 chain 24280 chr11 135086622 + 84578817 84579160 THE1A 353 + 0 341 50372 110 1 0 69 20 19 143 chain 30369 chr11 135086622 + 84588548 84588980 MER41A 554 + 0 554 41700 212 38 161 4 1 0 177 chain 86678 chr11 135086622 + 84592375 84593765 L1PA7 6471 + 5368 6428 20278 253 1 0 77 0 2 98 329 0 143 2 3 153 0 1 58 4 0 272 chain 12057 chr11 135086622 + 84756699 84756876 MER30 238 + 59 238 66744 48 4 0 8 2 11 70 3 0 42 chain 5160 chr11 135086622 + 84757239 84757395 MER5C 305 + 88 243 84859 34 82 81 40 chain 195982 chr11 135086622 + 84838672 84840998 L1PA6 6164 + 3832 6162 9845 1025 0 4 342 0 1 391 4 3 382 0 1 61 0 1 112 2 0 7 chain 29758 chr11 135086622 + 84861867 84862195 L1PA3long 6157 + 5828 6156 42293 328 chain 63522 chr11 135086622 + 84862216 84862981 L1PA7 6471 + 5706 6464 25521 432 5 6 164 6 0 103 0 1 47 3 0 5 chain 81313 chr11 135086622 + 84877722 84878702 L1PA7 6471 + 5466 6457 21368 155 0 3 126 0 1 292 7 12 81 0 1 251 0 1 68 chain 41220 chr11 135086622 + 84882930 84883470 L1PA8 5853 + 5315 5853 33831 249 1 0 45 2 0 60 21 19 52 2 1 19 1 0 32 0 1 47 0 4 9 chain 3084 chr11 135086622 + 84899897 84899973 MER135 159 - 31 106 98950 17 29 28 30 chain 24718 chr11 135086622 + 84952263 84952527 AluYd8 298 + 0 280 49699 52 0 16 212 chain 38586 chr11 135086622 + 84969706 84970176 L1PA7 6471 + 5994 6467 35652 15 0 4 125 0 1 320 2 0 8 chain 131167 chr11 135086622 + 84978257 84979804 L1PA5 6144 + 4581 6132 13909 240 17 11 173 0 1 291 0 4 21 0 1 180 0 2 5 2 0 16 9 12 352 0 1 103 0 1 35 2 1 101 chain 384161 chr11 135086622 + 84983266 84988859 L1PB1 5432 + 77 5420 5408 161 0 1 22 3 0 15 11 9 60 1 0 57 1 0 47 3 7 88 5 2 219 3 10 25 17 0 270 0 28 299 1 0 12 5 0 129 3 11 26 0 2 197 0 2 87 22 28 79 0 2 431 10 9 134 326 0 46 1 0 120 0 3 111 0 14 106 0 12 196 6 19 554 2 5 45 1 0 98 7 0 56 1 4 6 3 0 26 0 1 513 16 17 48 1 0 81 3 28 155 1 6 63 6 7 9 0 23 183 16 7 6 1 0 24 1 0 9 1 0 6 10 6 8 2 0 53 16 16 41 89 69 24 1 0 21 1 0 11 5 4 14 chain 40986 chr11 135086622 + 84992846 84994037 L1PA8 5853 + 5265 5853 33980 299 0 12 34 4 2 66 2 1 11 1 0 25 11 12 13 2 1 19 2 1 7 610 0 85 chain 139940 chr11 135086622 + 85067563 85069196 L1PA4 6152 + 3415 5034 13100 141 16 0 13 8 9 464 0 1 991 chain 3909 chr11 135086622 + 85070363 85070409 L1PB4 2604 + 2297 2343 92055 46 chain 55676 chr11 135086622 + 85095913 85096627 LTR12 884 + 0 869 27670 54 0 41 113 9 50 16 5 72 30 2 0 368 7 15 110 chain 54493 chr11 135086622 + 85129548 85130214 L1PA7 6471 + 5787 6465 28049 27 0 11 46 0 4 583 3 0 7 chain 25598 chr11 135086622 + 85134285 85134553 AluYa5 310 + 38 306 48318 268 chain 28402 chr11 135086622 + 85156888 85157284 MLT2A1 477 + 0 397 44268 87 1 2 79 5 2 163 5 6 40 3 5 13 chain 430350 chr11 135086622 + 85157293 85162819 HERVL-int 5654 + 25 5654 4743 449 0 63 106 7 6 63 1 9 150 17 18 221 7 8 16 10 14 157 0 1 138 2 0 280 0 2 136 0 1 212 3 14 125 1 2 282 0 5 540 0 9 574 0 3 36 1 0 13 14 11 43 5 6 205 0 2 146 0 2 99 4 0 231 0 2 111 1 4 278 1 2 79 1 4 17 0 7 123 6 5 168 41 7 75 8 26 323 chain 28841 chr11 135086622 + 85162819 85163205 MLT2A1 477 + 0 393 43569 158 0 1 10 4 1 145 0 13 57 4 0 8 chain 2854 chr11 135086622 + 85203118 85203165 MADE1 96 + 48 96 101220 22 4 5 21 chain 75680 chr11 135086622 + 85229219 85230125 L1PA7 6471 + 5537 6456 22664 85 0 2 512 0 1 64 0 1 31 2 11 212 chain 51044 chr11 135086622 + 85262218 85262874 PABL_A 660 + 0 660 29204 175 0 1 50 0 1 276 1 0 73 11 13 55 0 1 15 chain 20546 chr11 135086622 + 85266365 85266619 L1PA7 6471 + 6216 6468 55722 243 2 0 9 chain 23788 chr11 135086622 + 85270113 85270464 THE1B 368 + 8 368 51130 161 2 1 18 10 7 6 0 1 12 19 31 123 chain 25684 chr11 135086622 + 85272007 85272363 THE1B 368 + 0 368 48194 169 1 0 29 14 16 14 10 21 119 chain 125527 chr11 135086622 + 85272575 85273998 L1PA5 6144 + 4452 5877 14622 154 0 2 1269 chain 566945 chr11 135086622 + 85324758 85330790 L1HS 6032 + 0 6032 41 6032 chain 19494 chr11 135086622 + 85335702 85335953 L1PA7 6471 + 6218 6468 57039 55 9 5 6 0 3 181 chain 77147 chr11 135086622 + 85339750 85340636 L1PA6 6164 + 5266 6152 22273 740 1 0 4 0 1 141 chain 13499 chr11 135086622 + 85348960 85349157 MER4D1 891 + 0 199 64317 30 0 1 43 16 17 108 chain 97882 chr11 135086622 + 85350754 85353930 L1PA6 6164 + 4310 6097 18535 451 1389 0 1336 chain 49550 chr11 135086622 + 85365504 85366085 L1PA7 6471 + 5881 6468 29749 477 0 6 104 chain 138904 chr11 135086622 + 85369776 85371659 MER61-int 3695 + 1 1830 13198 46 1 0 32 3 7 19 2 0 89 39 0 77 2 1 21 8 3 114 2 3 124 7 6 99 2 0 395 19 2 187 0 3 21 0 1 372 0 5 202 chain 183868 chr11 135086622 + 85398918 85400942 L1PA3long 6157 + 4133 6157 10393 2024 chain 211821 chr11 135086622 + 85400951 85403497 L1PA6 6164 + 3618 6162 9291 78 3 0 786 1 0 159 3 2 344 0 1 955 0 1 31 1 0 4 1 2 22 7 8 151 chain 324444 chr11 135086622 + 85425651 85429354 L1PA4 6152 + 0 3717 6325 580 1 11 915 0 1 2095 0 3 112 chain 366049 chr11 135086622 + 85431728 85437315 L1PA8 5853 + 272 5853 5724 5 0 1 14 123 108 64 13 14 42 85 66 52 48 50 68 1 2 8 1 0 121 12 15 18 12 0 114 8 7 54 17 33 24 0 4 10 57 53 14 0 3 387 7 8 103 0 1 171 0 2 122 12 9 495 5 0 111 16 17 245 2 1 11 15 14 13 0 1 340 5 7 13 25 26 270 0 6 169 1 0 62 1 7 44 1 0 227 17 16 5 0 2 432 0 3 5 15 12 27 0 1 44 0 1 224 18 19 101 11 9 65 0 2 8 14 15 61 47 51 136 7 0 6 0 7 8 5 6 9 0 2 169 2 1 43 4 2 58 32 31 41 2 1 19 1 0 93 chain 4299 chr11 135086622 + 85438480 85438527 MADE1 96 + 48 95 89502 47 chain 77907 chr11 135086622 + 85484258 85485110 L1PA3long 6157 + 5053 5905 22120 852 chain 9600 chr11 135086622 + 85488422 85488551 THE1A 353 + 223 342 71269 58 10 0 61 chain 3912 chr11 135086622 + 85492680 85492725 Helitron3Na_Mam 445 + 63 108 92038 45 chain 302064 chr11 135086622 + 85495932 85500000 L1P2 5180 + 2 4048 6779 148 46 44 50 10 9 196 18 0 66 1 0 46 14 13 213 0 15 433 1 2 166 22 23 296 1 0 1025 2 1 10 1 2 74 21 7 72 0 4 138 17 9 107 1 0 61 0 4 179 11 12 268 1 0 82 0 2 5 2 0 264 chain 165550 chr11 135086622 + 85500000 85502423 L1PA7 6471 + 4362 6461 11373 85 0 1 165 332 5 11 5 6 39 0 4 942 2 1 6 0 1 202 0 1 467 11 12 81 12 7 63 chain 27643 chr11 135086622 + 85500259 85500554 L1HS 6032 + 5737 6032 45401 295 chain 7959 chr11 135086622 + 85502427 85502520 L1PA8 5853 + 5470 5564 74979 50 0 1 43 chain 22651 chr11 135086622 + 85502521 85502816 L1PA8 5853 + 5564 5853 52898 45 2 0 71 1 0 10 1 0 50 2 1 19 1 0 93 chain 68795 chr11 135086622 + 85510616 85511382 L1PA4 6152 + 5385 6151 24260 616 2 0 5 1 3 142 chain 5693 chr11 135086622 + 85526626 85526744 MLT2B1 522 + 7 126 82380 18 42 43 58 chain 6759 chr11 135086622 + 85538147 85538227 LTR12D 1347 + 1267 1347 78448 80 chain 39145 chr11 135086622 + 85549543 85550094 MER41B 635 + 1 558 35253 100 2 6 14 4 8 175 1 0 126 0 19 8 31 11 90 chain 58169 chr11 135086622 + 85606286 85607015 LTR12 884 + 0 861 26912 20 0 1 110 0 91 44 14 55 16 0 1 39 2 0 484 chain 53027 chr11 135086622 + 85613465 85614152 LTR12 884 + 0 842 28567 128 3 160 74 16 14 466 chain 313877 chr11 135086622 + 85728967 85732740 L1PA7 6471 + 2683 6457 6536 12 0 1 824 7 1 51 0 4 1091 1 9 279 1 4 353 3 4 285 16 0 19 0 4 76 0 2 185 0 1 381 10 9 32 9 0 9 7 16 122 chain 25001 chr11 135086622 + 85825144 85825404 AluYa5 310 + 38 298 49281 260 chain 66395 chr11 135086622 + 85849932 85851186 L1PA2 6032 + 4789 6029 24847 369 14 0 871 chain 114656 chr11 135086622 + 85852360 85853675 SVA_C 1631 + 20 1629 16440 195 1 0 19 0 1 201 0 116 273 0 179 219 1 0 406 chain 13406 chr11 135086622 + 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86111464 SVA_D 2077 + 1262 1303 36597 41 chain 8322 chr11 135086622 + 86153227 86153331 U6 107 + 1 104 74106 29 1 0 74 chain 32746 chr11 135086622 + 86223767 86224376 L1PA13 3608 + 2972 3548 39718 153 28 16 17 0 2 72 0 3 5 1 3 30 2 0 62 1 0 27 1 0 34 2 0 27 0 1 12 62 54 14 5 0 14 28 18 12 chain 3109 chr11 135086622 + 86233198 86233238 MER121 330 + 126 168 98710 6 0 2 34 chain 3215 chr11 135086622 + 86291036 86291130 MER53 195 - 28 147 97758 4 1 0 23 21 46 21 7 8 17 chain 5818 chr11 135086622 + 86355033 86355124 L1MB3 1562 + 1201 1292 81839 40 8 7 36 0 1 7 chain 38851 chr11 135086622 + 86356604 86357135 MER41A 554 + 0 554 35465 43 13 28 197 5 8 192 11 16 70 chain 76415 chr11 135086622 + 86365785 86366704 L1P1 4361 + 3403 4328 22458 279 0 1 268 0 1 26 1 0 169 2 1 63 4 7 81 3 6 23 chain 48033 chr11 135086622 + 86423497 86424046 LTR6B 557 + 0 557 30285 50 1 0 124 0 8 172 0 1 202 chain 25990 chr11 135086622 + 86513931 86514318 THE1D 372 + 0 372 47728 9 0 2 65 19 0 90 24 26 180 chain 22623 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chr11 135086622 + 91094996 91096304 L1PA5 6144 + 4831 6140 16316 979 1 2 328 chain 3470 chr11 135086622 + 91133461 91133512 LTR16C 481 + 411 463 95459 17 1 2 33 chain 76567 chr11 135086622 + 91171452 91172468 L1PA10 4194 + 1656 2678 22421 169 1 2 393 4 8 5 1 0 37 1 2 172 3 4 181 0 1 35 1 0 13 chain 146448 chr11 135086622 + 91224643 91226320 L1PA5 6144 + 4189 5875 12580 91 0 2 32 1 0 30 0 4 626 0 4 319 0 4 230 4 0 344 chain 176117 chr11 135086622 + 91255505 91257526 L1PA5 6144 + 4073 6135 10772 238 0 1 22 3 11 283 1 0 81 2 0 296 0 6 11 0 1 220 0 24 4 1 0 4 0 1 21 0 4 834 chain 126396 chr11 135086622 + 91268573 91270074 LTR12C 1709 + 0 1709 14495 491 0 1 199 0 200 217 13 10 12 0 4 90 0 4 27 0 1 155 0 2 7 1 0 289 chain 23393 chr11 135086622 + 91275436 91275701 L1PA5 6144 + 5860 6125 51772 265 chain 3763 chr11 135086622 + 91378526 91378574 Tigger7 736 + 71 120 93122 17 0 1 31 chain 69063 chr11 135086622 + 91401339 91402201 L1PA8 5853 + 4033 4958 24201 269 0 1 61 1 0 347 0 1 27 0 1 68 0 59 29 0 2 60 chain 12294 chr11 135086622 + 91504405 91504543 MER85 139 + 1 139 66296 138 chain 36444 chr11 135086622 + 91505724 91506127 L1PA4 6152 + 4699 5103 37107 51 0 1 352 chain 450674 chr11 135086622 + 91576008 91583073 L1PA6 6164 + 0 6138 4378 88 0 735 601 0 2 425 0 1 82 0 4 1145 1673 0 418 0 1 750 6 7 42 0 2 25 0 1 30 3 7 282 0 1 71 11 14 381 5 3 197 0 2 307 10 0 386 0 1 127 chain 106567 chr11 135086622 + 91578847 91580018 L1PA3long 6157 + 4976 6146 17486 1164 1 0 6 chain 431353 chr11 135086622 + 91597119 91602743 HERVL-int 5654 + 1 5646 4733 680 22 15 173 1 6 198 22 9 36 1 0 111 0 1 295 0 18 138 0 1 335 6 11 362 5 6 174 9 7 56 1 2 14 0 4 35 3 2 4 0 1 345 7 6 5 0 1 314 0 1 56 6 7 306 12 11 367 0 8 309 5 4 4 0 1 320 6 0 292 18 20 141 18 16 41 0 5 371 chain 24860 chr11 135086622 + 91624803 91625325 L1PB1 5432 + 4926 5412 49507 53 1 0 121 20 22 13 1 0 12 16 11 9 2 0 53 2 1 16 1 0 14 7 0 29 1 0 16 3 0 7 41 29 14 2 0 9 0 1 6 15 14 15 1 0 13 1 0 8 chain 126083 chr11 135086622 + 91675777 91677353 THE1A-int 1579 + 0 1579 14539 271 0 2 137 1 0 422 2 0 95 1 0 4 0 1 560 0 1 6 0 2 20 0 1 57 chain 27953 chr11 135086622 + 91677360 91677708 THE1A 353 + 7 353 44940 103 1 0 92 1 0 151 chain 269868 chr11 135086622 + 91681688 91684664 L1PA3long 6157 + 3174 6157 7708 1183 0 4 1781 0 3 12 chain 55417 chr11 135086622 + 91876139 91876887 MER4E1 777 + 6 777 27744 11 1 2 332 0 1 186 22 28 28 6 12 20 0 9 142 chain 181432 chr11 135086622 + 91916333 91918369 L1PA4 6152 + 3479 5517 10528 207 1 0 294 1 0 1131 0 1 297 0 3 105 chain 29579 chr11 135086622 + 92006574 92006929 MLT2A1 477 + 0 361 42508 43 1 2 95 0 1 27 1 5 188 chain 544233 chr11 135086622 + 92026888 92032908 L1PA2 6032 + 1 6031 1073 70 1 2 183 1 0 122 0 1 1566 0 10 4057 1 0 19 chain 25573 chr11 135086622 + 92041180 92041534 L1PA8 5853 + 5502 5849 48364 62 1 0 44 2 0 67 5 4 14 5 4 43 2 1 19 1 0 89 chain 99942 chr11 135086622 + 92043809 92045055 L1PA7 6471 + 5215 6461 18306 391 1 0 14 2 1 11 1 0 68 0 2 129 0 1 476 7 0 6 21 28 119 chain 456932 chr11 135086622 + 92072534 92077764 L1PA4 6152 + 0 5229 4210 2336 0 1 232 1 2 341 0 1 595 0 1 180 0 1 284 6 0 989 7 0 8 0 7 251 chain 7275 chr11 135086622 + 92092740 92092851 MER57D 437 + 328 437 76750 18 11 9 82 chain 246926 chr11 135086622 + 92093891 92096663 L1PA3long 6157 + 3384 6157 8304 304 2 1 1618 0 2 848 chain 168595 chr11 135086622 + 92156862 92158918 SVA_D 2077 + 7 2076 11176 13 12 0 161 0 15 527 2 0 38 0 40 107 2 0 9 2 0 26 45 5 23 4 8 13 45 12 32 0 2 63 12 0 238 0 50 274 0 1 312 0 4 96 chain 3119 chr11 135086622 + 92157761 92157806 SVA_D 2077 + 1130 1175 36514 45 chain 3050 chr11 135086622 + 92157846 92157890 SVA_D 2077 + 1264 1308 36514 44 chain 549851 chr11 135086622 + 92169405 92175566 L1PA3long 6157 + 4 6149 756 442 2 1 225 3 1 161 1 0 4 0 1 351 0 3 356 23 3 655 0 2 1940 0 1 1334 0 1 664 chain 58736 chr11 135086622 + 92244794 92245499 L1PA7 6471 + 5763 6468 26754 235 8 0 7 2 11 121 1 0 331 chain 3611 chr11 135086622 + 92320146 92320214 MADE1 96 - 9 96 94334 29 6 25 33 chain 22950 chr11 135086622 + 92465580 92465857 L1PA6 6164 + 5872 6162 52444 252 0 13 25 chain 216107 chr11 135086622 + 92515924 92518659 L1PA8 5853 + 3129 5853 9147 988 0 8 409 0 2 49 5 12 390 0 4 15 1 0 4 3 1 299 49 6 204 0 1 23 5 6 14 1 0 26 0 1 12 10 8 68 1 0 9 5 4 44 17 33 84 chain 396839 chr11 135086622 + 92563648 92568052 L1PA3long 6157 + 1753 6157 5204 184 0 1 801 0 1 1161 0 1 247 0 1 491 1 0 252 0 1 417 0 2 657 5 0 170 1 0 17 chain 12664 chr11 135086622 + 92753799 92754120 L1PB1 5432 + 5106 5420 65692 9 3 0 19 1 0 10 11 15 10 2 0 51 2 1 16 1 0 33 63 65 11 2 0 17 11 10 18 1 0 13 1 0 16 chain 19375 chr11 135086622 + 92812340 92812593 AluSx4 309 + 40 292 57156 97 16 15 140 chain 30049 chr11 135086622 + 92812824 92813206 THE1C 375 + 0 375 42002 243 6 0 106 1 0 26 chain 13772 chr11 135086622 + 92814662 92814875 L1PA8 5853 + 5644 5853 63920 34 19 17 49 9 8 8 1 0 93 chain 86937 chr11 135086622 + 93004039 93005062 L1PA7 6471 + 5439 6465 20242 175 0 3 848 chain 60129 chr11 135086622 + 93005779 93006543 MER4E1 777 + 0 770 26336 25 2 0 167 1 0 122 5 2 226 1 9 57 1 5 157 chain 10862 chr11 135086622 + 93008233 93008382 THE1A 353 + 13 353 68760 66 8 199 75 chain 380425 chr11 135086622 + 93042922 93047249 L1P1 4361 + 1 4341 5475 519 0 4 6 4 0 1565 4 19 1310 0 1 726 1 0 154 1 0 23 2 1 12 chain 71422 chr11 135086622 + 93110931 93111832 L1PA8 5853 + 3496 4410 23671 322 4 5 22 1 0 283 1 9 20 0 3 141 6 9 60 1 0 40 chain 567603 chr11 135086622 + 93136638 93142673 L1HS 6032 + 0 6032 27 74 0 1 601 4 0 5356 chain 21770 chr11 135086622 + 93178684 93178927 L1PB 1623 + 878 1121 54139 243 chain 29444 chr11 135086622 + 93243185 93243496 AluYa5 310 + 0 310 42682 132 1 0 178 chain 159785 chr11 135086622 + 93245338 93247312 L1PA7 6471 + 4504 6454 11767 54 14 5 420 20 10 50 7 0 571 0 2 94 1 0 293 0 2 5 6 4 293 2 3 144 chain 105654 chr11 135086622 + 93253888 93255403 L1PB1 5432 + 3934 5422 17603 280 0 1 201 2 1 209 9 0 186 7 6 109 1 6 144 7 4 22 17 11 20 1 0 12 1 0 12 16 10 52 2 1 14 0 1 45 1 0 13 2 0 8 15 6 18 3 1 5 1 0 14 2 0 24 1 0 18 5 18 16 chain 52517 chr11 135086622 + 93264909 93265558 HERVIP10FH-int 2884 + 150 801 28724 24 14 15 24 1 0 186 1 2 320 0 1 79 chain 48208 chr11 135086622 + 93310565 93311196 L1MA3 4352 + 2610 3246 30214 113 6 5 12 3 6 112 0 1 234 0 2 151 chain 5131 chr11 135086622 + 93311608 93311666 L1MA3 4352 - 1505 1563 85009 58 chain 11997 chr11 135086622 + 93341341 93341497 THE1A 353 + 188 353 66840 125 6 15 25 chain 3282 chr11 135086622 + 93407826 93407905 MADE1 96 - 0 96 97169 38 17 34 24 chain 276520 chr11 135086622 + 93416132 93419192 L1PA3long 6157 + 3094 6157 7536 296 1 4 2763 chain 23108 chr11 135086622 + 93419892 93420970 L1PA4 6152 + 3466 4546 10902 491 0 2 587 chain 565987 chr11 135086622 + 93420986 93427007 L1HS 6032 + 14 6032 67 60 0 1 601 4 0 5356 chain 20814 chr11 135086622 + 93427031 93428002 L1PA4 6152 + 4546 5519 10902 859 0 2 112 chain 97738 chr11 135086622 + 93454304 93455520 L1PA7 6471 + 5257 6470 18556 5 0 1 210 0 5 76 0 4 63 1 0 42 13 0 29 6 8 617 2 0 139 1 2 12 chain 523316 chr11 135086622 + 93458096 93464200 L1PA6 6164 + 0 6161 2127 162 0 34 40 0 2 280 0 2 47 2 1 520 1 4 779 0 1 462 0 1 839 4 5 2105 0 11 18 0 3 845 chain 3334 chr11 135086622 + 93476645 93476681 MIR 256 + 13 49 96731 36 chain 30092 chr11 135086622 + 93509365 93509962 L1PB1 5432 + 4864 5422 41961 94 7 6 139 34 29 5 0 2 5 1 0 12 2 0 3 2 0 7 6 4 50 2 1 16 2 1 18 0 2 23 6 0 14 4 0 7 16 6 12 16 13 13 2 0 24 1 0 22 17 15 15 chain 31025 chr11 135086622 + 93531725 93532173 MER4A1 472 + 0 472 41104 75 0 1 144 8 29 48 7 10 89 23 22 54 chain 91614 chr11 135086622 + 93602023 93603107 L1PA5 6144 + 5049 6129 19392 48 0 1 196 1 0 139 4 0 364 8 9 248 1 0 75 chain 41529 chr11 135086622 + 93621610 93622168 MER41A 554 + 0 554 33662 43 2 12 71 19 2 108 4 0 10 0 3 159 0 4 142 chain 33512 chr11 135086622 + 93624406 93624876 MER4A1 472 + 0 472 39081 26 1 2 5 1 0 193 1 0 7 0 4 31 1 5 9 22 17 173 chain 12137 chr11 135086622 + 93627969 93628117 MER4A 717 + 0 151 66593 70 0 3 78 chain 8873 chr11 135086622 + 93719604 93719713 HY1 111 + 2 111 72827 109 chain 53774 chr11 135086622 + 93758997 93759645 L1PA7 6471 + 5798 6459 28293 266 0 14 171 2 1 209 chain 8475 chr11 135086622 + 93769946 93770049 MER57B2 428 + 0 102 73737 23 1 0 79 chain 8783 chr11 135086622 + 93827621 93827732 HY1 111 + 0 111 73033 111 chain 13251 chr11 135086622 + 93858761 93858917 MER4A1 472 + 0 158 64709 14 0 2 142 chain 32420 chr11 135086622 + 93860764 93861195 MER4A1 472 + 0 455 40022 15 0 2 228 0 20 45 9 11 134 chain 27170 chr11 135086622 + 93879360 93879799 LTR7B 505 + 0 490 46011 105 0 10 56 52 31 33 6 27 49 1 42 88 14 13 20 0 1 15 chain 234551 chr11 135086622 + 93898787 93901680 L1PA7 6471 + 3586 6470 8616 66 0 6 171 14 0 175 8 6 945 1 0 497 1 0 162 0 3 92 0 1 756 1 0 4 chain 22463 chr11 135086622 + 93933503 93933838 THE1B 368 + 0 344 53171 169 6 5 17 42 52 101 chain 56693 chr11 135086622 + 94013116 94014006 L1PB2 3958 + 2957 3834 27366 294 1 2 5 1 0 49 6 4 50 1 0 10 2 0 3 3 0 63 3 1 14 17 13 80 1 0 8 37 41 24 1 0 61 1 0 67 25 23 6 1 0 40 0 3 16 chain 10284 chr11 135086622 + 94014423 94014541 Tigger1 2417 + 1610 1728 69842 118 chain 43507 chr11 135086622 + 94014895 94015405 MER9a3 513 + 0 513 32451 18 0 2 414 0 1 78 chain 558550 chr11 135086622 + 94036857 94042888 L1PA2 6032 + 2 6032 220 740 1 0 5290 chain 7158 chr11 135086622 + 94079917 94080012 L1PA10 4194 + 4058 4150 77078 58 3 0 34 chain 4916 chr11 135086622 + 94084913 94084982 MADE1 96 + 11 96 86075 31 1 17 37 chain 38202 chr11 135086622 + 94118243 94118725 LTR12 884 + 0 872 35905 205 0 156 17 2 0 174 0 236 84 chain 412475 chr11 135086622 + 94118765 94123646 HERV9-int 5642 + 0 4890 4997 139 0 2 654 10 9 303 25 27 117 13 12 2138 0 6 126 0 1 1356 chain 41105 chr11 135086622 + 94125285 94125837 LTR12 884 + 0 884 33907 262 0 91 25 2 0 70 17 24 80 0 236 96 chain 6755 chr11 135086622 + 94134459 94134562 MLT1A 405 + 1 102 78459 27 5 0 51 1 4 19 chain 9108 chr11 135086622 + 94165409 94165509 L1P1 4361 + 2072 2172 72327 100 chain 69513 chr11 135086622 + 94191483 94192297 L1PA5 6144 + 3450 4271 24119 232 1 0 143 6 5 55 0 6 63 0 3 314 chain 75243 chr11 135086622 + 94209382 94210480 L1PA11 4918 + 3499 4578 22785 278 0 1 19 8 9 324 16 17 178 1 0 31 0 1 36 2 1 13 8 6 61 2 0 13 5 4 11 50 37 15 1 0 13 2 0 11 chain 28969 chr11 135086622 + 94242879 94243436 L1MA3 4352 + 3829 4347 43377 75 0 1 38 9 14 46 1 5 13 1 0 71 49 21 20 1 4 88 10 5 28 2 0 24 2 1 5 1 0 18 12 11 11 1 0 3 11 0 12 1 0 4 chain 493438 chr11 135086622 + 94248082 94253936 L1PA5 6144 + 0 5870 3329 121 0 14 19 0 12 345 2 3 97 0 1 545 21 12 266 7 16 258 1 0 765 2 6 272 2 0 585 0 3 606 0 1 200 0 3 43 0 1 252 1 25 299 12 0 12 44 8 862 0 1 22 0 2 193 chain 77923 chr11 135086622 + 94267850 94268930 L1PB1 5432 + 3739 4797 22117 328 23 20 268 0 1 4 1 0 85 0 1 4 17 6 30 5 3 139 7 0 169 chain 153299 chr11 135086622 + 94268945 94270801 L1PA7 6471 + 4606 6467 12160 32 0 1 37 0 4 92 0 3 251 11 1 580 7 10 231 0 1 152 0 2 240 0 1 31 9 8 40 0 1 143 chain 36377 chr11 135086622 + 94278284 94278741 LTR71A 459 + 0 459 37154 87 0 3 99 1 2 254 3 1 13 chain 262181 chr11 135086622 + 94317027 94319943 L1PA3long 6157 + 3217 6152 7902 42 0 4 253 0 4 625 0 1 237 5 12 827 0 2 321 0 1 606 chain 26475 chr11 135086622 + 94319963 94320258 L1PA3long 6157 + 5858 6153 47020 295 chain 13629 chr11 135086622 + 94331846 94331998 L1PA7 6471 + 6309 6461 64119 152 chain 2930 chr11 135086622 + 94340510 94340545 L1MEf 1413 + 176 211 100580 35 chain 72605 chr11 135086622 + 94340703 94341482 L1HS 6032 + 5252 6032 23399 165 0 1 614 chain 26228 chr11 135086622 + 94345724 94346108 LTR7 482 + 0 467 47378 69 8 46 109 8 40 50 0 10 41 0 1 53 12 14 34 chain 300729 chr11 135086622 + 94346125 94353879 HERVH-int 3825 + 0 3825 6805 428 3 0 31 1 2 74 5 0 6 1 0 4 0 1 24 1 0 10 92 76 35 2 22 66 1 0 81 0 1 209 13 14 142 15 0 110 3938 0 139 1 0 649 0 1 99 0 4 63 7 6 49 0 4 234 1 0 6 0 1 235 0 17 197 39 41 460 0 1 283 chain 176785 chr11 135086622 + 94347581 94349753 HERVH-int 3825 + 1429 3825 10737 29 0 2 10 1 0 197 0 1 111 0 1 306 11 16 968 9 11 39 8 218 143 0 2 115 0 2 225 chain 507887 chr11 135086622 + 94358728 94364906 L1PA5 6144 + 2 6143 2853 133 52 66 272 3 4 472 24 0 220 9 0 191 23 0 73 1 0 66 0 1 81 0 1 731 2 1 132 2 0 125 7 8 256 6 5 314 2 0 9 0 2 321 0 1 338 0 1 473 0 4 317 0 1 527 0 1 234 2 1 742 1 0 17 chain 541435 chr11 135086622 + 94370377 94376518 L1PA4 6152 + 6 6151 1241 769 1 2 1926 0 5 134 6 5 719 0 3 263 0 1 364 0 1 343 8 9 284 7 1 459 1 0 857 chain 117700 chr11 135086622 + 94382377 94384172 L1P3 4156 + 2648 4139 15939 449 0 4 47 306 0 333 0 2 17 1 0 57 1 2 158 0 1 280 3 1 107 3 1 6 1 0 26 chain 521358 chr11 135086622 + 94384361 94390329 L1PA5 6144 + 0 6144 2210 271 0 141 264 0 2 115 1 0 1567 0 22 1298 0 4 266 0 2 1340 1 6 834 0 1 11 chain 172341 chr11 135086622 + 94390338 94392468 L1PA7 6471 + 4324 6461 10983 881 1 0 7 0 1 118 1 2 33 6 9 131 1 0 115 2 0 785 19 25 30 chain 106597 chr11 135086622 + 94408519 94409865 L1PB1 5432 + 2184 3539 17482 74 0 1 151 6 7 78 2 0 339 2 0 6 1 2 544 0 4 86 2 0 8 0 8 47 chain 8000 chr11 135086622 + 94421780 94422027 L1MB2 1706 + 1454 1693 74888 58 101 88 11 1 0 27 14 20 35 chain 69554 chr11 135086622 + 94461450 94462575 L1PA5 6144 + 3961 4779 24108 189 0 4 144 315 0 19 0 1 6 1 3 99 0 1 352 chain 118271 chr11 135086622 + 94462577 94463942 L1PA5 6144 + 4780 6141 15838 1355 4 0 6 chain 26677 chr11 135086622 + 94483338 94483706 THE1B 368 + 0 368 46718 12 3 1 24 0 5 130 2 1 65 0 1 88 3 0 41 chain 3021 chr11 135086622 + 94487203 94487239 L1MB2 1706 + 1658 1694 99637 36 chain 8820 chr11 135086622 + 94521332 94521541 MER47B 469 + 100 421 72950 8 7 0 20 66 187 99 2 0 7 chain 12388 chr11 135086622 + 94538547 94538743 MER2 342 + 87 278 66156 21 1 0 11 4 0 68 1 0 26 11 10 5 0 2 48 chain 8732 chr11 135086622 + 94569680 94569797 L1PB4 2604 + 2454 2570 73135 98 1 0 18 chain 29309 chr11 135086622 + 94641600 94642009 LTR7 482 + 0 482 42873 67 10 48 109 0 1 39 0 31 10 0 1 113 12 14 49 chain 296051 chr11 135086622 + 94642011 94645643 HERVH-int 3825 + 0 3825 6950 211 0 11 111 1 0 43 0 4 102 0 1 47 1 0 11 1 0 4 0 1 24 1 0 10 1 0 12 24 12 29 3 0 12 6 4 7 1 0 30 2 0 11 1 0 13 32 1 45 0 1 6 0 2 14 0 3 444 15 0 86 14 0 11 0 2 86 1 0 64 1 0 210 4 31 114 0 1 175 1 15 1049 9 11 39 8 218 262 0 2 223 chain 28259 chr11 135086622 + 94646902 94647294 LTR7 482 + 0 465 44471 69 8 46 110 0 1 38 0 31 12 0 1 111 12 14 32 chain 4024 chr11 135086622 + 94657185 94657240 MER51B 395 + 127 181 91287 17 1 0 37 chain 24273 chr11 135086622 + 94712268 94712630 L1P4 1494 + 1052 1428 50385 10 0 6 133 9 23 126 1 0 40 2 0 20 4 0 6 0 1 11 chain 5320 chr11 135086622 + 94721165 94721401 MER33 330 + 31 262 84098 6 2 0 32 135 133 37 2 0 8 0 2 8 1 0 5 chain 4692 chr11 135086622 + 94754747 94754837 MER53 195 - 5 85 87307 8 9 0 43 9 8 21 chain 26386 chr11 135086622 + 94787439 94787717 AluYg6 310 + 32 310 47138 278 chain 21778 chr11 135086622 + 94792074 94792316 L1PA5 6144 + 5738 5980 54122 242 chain 12717 chr11 135086622 + 94792331 94792470 L1PA5 6144 + 5997 6136 65586 139 chain 15101 chr11 135086622 + 94807978 94808242 MER4A 717 + 10 337 62152 111 39 19 32 0 83 13 4 0 31 8 12 26 chain 87043 chr11 135086622 + 94902465 94903706 L1PA16 3655 + 1183 2436 20227 20 1 0 18 11 0 11 0 20 123 1 0 3 7 0 417 1 0 42 0 1 12 0 2 26 18 22 237 8 11 84 1 0 36 10 11 33 11 14 110 chain 19741 chr11 135086622 + 94924555 94924798 MER75B 242 + 0 242 56739 137 5 4 101 chain 14960 chr11 135086622 + 94932622 94932855 L1PA16 3655 + 3410 3619 62310 168 3 0 14 16 0 11 5 0 16 chain 4123 chr11 135086622 + 94943417 94943579 LTR16B1 483 + 125 346 90634 13 1 2 15 92 150 41 chain 3378 chr11 135086622 + 95060060 95060125 LTR16A 446 + 124 191 96321 32 14 16 19 chain 101957 chr11 135086622 + 95208531 95209731 L1PA7 6471 + 4920 6142 18069 27 0 1 4 1 0 33 0 1 628 0 3 86 1 0 51 11 31 48 1 0 309 chain 26150 chr11 135086622 + 95236253 95236594 THE1A 353 + 0 341 47496 109 8 7 83 1 0 96 0 2 44 chain 65972 chr11 135086622 + 95273391 95274155 L1PA5 6144 + 5380 6144 24968 764 chain 40599 chr11 135086622 + 95309418 95309890 LTR7Y 441 + 0 441 34224 165 31 0 276 chain 290982 chr11 135086622 + 95309890 95313550 HERVH-int 3825 + 0 3825 7103 532 130 0 38 1 0 10 1 0 24 29 0 14 1 0 12 13 10 17 11 72 26 0 1 7 0 2 13 0 3 114 1 0 8 0 1 520 2 1 27 0 2 231 4 31 25 0 8 262 0 10 964 3 3 82 9 11 39 8 218 254 3 8 225 chain 3320 chr11 135086622 + 95310488 95310526 HERVH-int 3825 + 532 570 96850 38 chain 39306 chr11 135086622 + 95317332 95317793 LTR7Y 441 + 0 431 35143 165 31 0 158 0 1 107 chain 4472 chr11 135086622 + 95324908 95324986 MLT2A1 477 + 409 477 88486 26 11 1 41 chain 227861 chr11 135086622 + 95409287 95411957 L1PA6 6164 + 3498 6162 8814 502 8 0 179 0 1 499 1 0 89 0 1 283 4 0 42 6 7 211 0 4 846 chain 567742 chr11 135086622 + 95436216 95442246 L1HS 6032 + 1 6032 22 73 0 1 5957 chain 144406 chr11 135086622 + 95481808 95483414 SVA_D 2077 + 25 2070 12739 892 1 0 3 0 38 46 0 403 213 1 0 450 chain 9076 chr11 135086622 + 95589793 95589940 MER33 330 + 146 294 72388 9 1 0 24 0 3 7 13 12 93 chain 10976 chr11 135086622 + 95621614 95621732 L1PA4 6152 + 6033 6151 68584 118 chain 46531 chr11 135086622 + 95693013 95693705 L1PA16 3655 + 2947 3619 30830 33 0 2 143 0 8 71 41 32 54 2 0 273 11 0 15 3 0 15 15 10 16 chain 3174 chr11 135086622 + 95750406 95750607 MLT1G 592 + 381 567 98151 15 27 25 14 93 81 14 8 7 30 chain 442762 chr11 135086622 + 95806256 95811590 L1PA5 6144 + 0 6144 4523 135 11 25 310 7 9 61 1 2 221 0 1 4 1 0 39 17 0 7 1 18 34 0 2 77 0 4 43 0 2 175 9 0 621 0 2 402 2 0 157 0 12 67 0 4 327 0 2 450 0 3 1131 0 4 294 9 7 31 11 775 110 0 2 176 0 5 393 chain 4212 chr11 135086622 + 95887349 95887403 MLT1A0 366 + 253 314 90056 48 0 7 6 chain 3020 chr11 135086622 + 95918783 95918822 MamSINE1 258 + 184 222 99652 30 1 0 8 chain 11236 chr11 135086622 + 95925924 95926135 MER2 342 + 37 278 68191 25 0 1 5 36 66 106 12 11 27 chain 266645 chr11 135086622 + 95936331 95940164 HERVK22-int 3844 + 0 3470 7788 43 3 0 15 0 1 53 0 2 673 0 1 769 0 2 148 0 1 193 0 1 143 0 1 37 0 5 229 321 0 89 7 11 627 1 0 74 1 0 6 1 0 17 2 1 34 5 7 15 2 0 39 40 35 18 2 0 16 27 15 10 2 0 6 99 74 17 15 9 28 1 0 5 chain 21387 chr11 135086622 + 95982791 95983291 Tigger3b 1229 + 54 588 54650 40 187 204 32 0 3 133 0 3 50 8 0 22 0 5 6 0 3 6 1 12 15 chain 5079 chr11 135086622 + 95990933 95991013 MADE1 96 - 0 96 85251 35 7 23 38 chain 26661 chr11 135086622 + 96007751 96008039 L1PA2 6032 + 5744 6032 46742 288 chain 16149 chr11 135086622 + 96118251 96118583 THE1D 372 + 2 372 60814 50 14 30 29 11 13 20 74 94 134 chain 23686 chr11 135086622 + 96208631 96208921 L1PBa 3878 + 583 871 51294 187 2 0 101 chain 28120 chr11 135086622 + 96240284 96240587 AluYb8 318 + 16 318 44684 190 1 0 112 chain 2716 chr11 135086622 + 96248413 96248446 MER33 330 + 243 277 102203 6 0 1 27 chain 39665 chr11 135086622 + 96270784 96271305 MLT2A2 560 + 26 560 34913 20 1 0 20 0 2 323 10 22 36 1 0 41 0 1 69 chain 6811 chr11 135086622 + 96271330 96271409 THE1C-int 1605 + 1519 1598 78276 79 chain 28992 chr11 135086622 + 96271416 96271787 THE1C 375 + 0 375 43334 15 0 1 170 1 0 124 0 5 35 1 0 25 chain 37788 chr11 135086622 + 96285261 96285907 L1PA11 4918 + 3952 4578 36214 64 0 5 28 1 0 6 12 13 55 13 14 176 0 4 11 8 0 60 15 14 5 2 0 67 2 0 14 1 0 20 4 0 9 47 37 13 2 0 11 chain 21232 chr11 135086622 + 96322427 96322701 AluY 311 + 11 290 54843 31 0 6 82 1 2 128 7 5 25 chain 36680 chr11 135086622 + 96349493 96350094 L1PA11 4918 + 4016 4578 36966 133 0 1 33 0 1 143 1 0 5 1 0 56 7 6 13 2 1 66 2 0 10 93 55 10 0 5 13 2 0 11 chain 55213 chr11 135086622 + 96415847 96416934 L1MA3 4352 + 0 866 27802 14 14 8 15 5 6 53 2 1 59 1 0 19 5 0 105 1 0 64 18 20 5 2 0 77 0 5 40 256 9 54 1 0 85 0 37 97 2 0 93 chain 6388 chr11 135086622 + 96421792 96421935 MER2 342 + 177 320 79711 69 53 53 21 chain 8918 chr11 135086622 + 96455873 96456030 MSTA 426 + 18 193 72744 66 30 48 51 1 0 4 0 1 5 chain 444807 chr11 135086622 + 96486890 96493109 L1PA6 6164 + 56 6162 4475 109 95 97 50 255 48 12 3 0 77 19 0 59 0 1 4 21 15 37 80 4 17 14 14 16 17 22 107 21 0 62 0 17 122 25 44 57 21 183 232 0 1 13 5 7 447 0 1 402 0 1 63 0 4 392 0 4 169 1 0 211 8 8 11 0 1 620 4 0 682 0 1 547 1 2 266 1 0 516 1 2 142 1 2 5 1 0 169 0 2 9 chain 15483 chr11 135086622 + 96506715 96506963 LTR46-int 301 + 56 299 61677 95 2 4 41 13 14 52 18 10 27 chain 47926 chr11 135086622 + 96513883 96514399 L1PA2 6032 + 5503 6019 30320 516 chain 68773 chr11 135086622 + 96528697 96529808 L1PA13 3608 + 113 1191 24264 22 3 1 5 1 0 21 2 1 14 3 0 24 28 17 68 7 5 125 1 0 12 1 0 17 2 0 16 6 2 18 1 0 5 18 16 14 2 0 17 1 0 64 1 2 4 1 0 28 2 0 264 4 3 147 14 14 57 0 4 71 chain 507709 chr11 135086622 + 96545008 96551153 L1PA6 6164 + 0 6145 2860 46 25 22 173 14 13 370 10 11 52 0 1 272 12 3 56 1 0 249 0 4 570 2 0 491 0 1 578 0 1 4 1 0 260 2 3 6 1 0 84 0 1 354 0 5 680 0 1 27 0 1 142 0 1 297 0 1 535 1 0 830 chain 543524 chr11 135086622 + 96555598 96561739 L1PA3long 6157 + 6 6157 1105 191 1 2 991 0 3 661 0 1 204 8 7 624 1 0 97 0 4 59 0 2 410 0 1 2559 0 2 190 0 1 137 3 0 5 chain 82659 chr11 135086622 + 96586132 96587100 LTR5_Hs 974 + 0 974 21091 17 0 4 438 0 4 394 2 1 53 1 0 63 chain 40366 chr11 135086622 + 96587634 96588085 LTR7 482 + 0 482 34405 230 0 31 221 chain 295133 chr11 135086622 + 96588087 96591957 HERVH-int 3825 + 0 3816 6980 212 4 15 305 133 0 38 1 0 7 1 0 12 4 0 14 7 1 15 1 0 12 3 0 8 7 10 7 1 0 7 39 0 35 88 1 15 21 0 15 2 1 26 0 2 20 0 1 415 0 1 31 15 0 215 0 1 239 8 35 165 0 1 1146 0 2 90 8 218 478 chain 5350 chr11 135086622 + 96588637 96588736 HERVH-int 3825 + 436 532 83959 52 2 0 12 21 20 12 chain 39532 chr11 135086622 + 96593223 96593661 LTR7 482 + 0 469 34995 263 1 32 174 chain 5634 chr11 135086622 + 96636055 96636280 LTR12D 1347 + 501 751 82638 35 70 25 6 2 0 17 60 132 35 chain 51486 chr11 135086622 + 96643226 96643848 LTR12_ 688 + 0 688 29052 80 0 66 20 1 0 81 0 1 440 chain 54012 chr11 135086622 + 96670214 96671026 L1PB 1623 + 800 1575 28224 383 1 2 120 4 0 141 1 0 7 2 1 30 1 0 4 3 0 13 5 1 12 2 1 9 52 29 22 chain 26623 chr11 135086622 + 96683888 96684235 L1PA7 6471 + 6116 6465 46797 197 6 13 122 0 1 10 6 0 6 chain 66232 chr11 135086622 + 96728050 96728880 L1PA6 6164 + 5025 5847 24901 572 16 8 242 chain 25008 chr11 135086622 + 96728880 96729193 L1PA6 6164 + 5848 6161 49263 313 chain 14328 chr11 135086622 + 96747767 96747972 MER30 238 + 8 230 63153 89 15 32 101 chain 166638 chr11 135086622 + 96813140 96815180 L1PA7 6471 + 4427 6467 11298 227 6 17 278 1 0 61 8 11 142 3 4 455 9 5 307 1 0 32 1 0 175 4 0 320 4 0 6 chain 23252 chr11 135086622 + 96861708 96862060 THE1B 368 + 0 366 52001 36 1 0 8 6 21 110 2 1 100 25 26 64 chain 8303 chr11 135086622 + 96883279 96883382 L1MA5 2750 + 2417 2520 74152 103 chain 331276 chr11 135086622 + 96910223 96914059 L1PA5 6144 + 2281 6139 6195 33 0 1 261 0 4 582 1 2 12 2 0 103 0 1 120 0 1 108 0 1 167 1 2 662 0 4 390 0 3 276 1 0 4 0 1 100 1 0 175 2 1 516 4 2 85 0 10 47 1 2 182 chain 200854 chr11 135086622 + 96934851 96937016 L1PA2 6032 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135086622 + 97281794 97281828 L1M1 2793 + 1844 1878 101796 34 chain 71304 chr11 135086622 + 97288347 97289274 L1PA8 5853 + 4699 5640 23694 166 0 6 61 0 1 54 0 4 8 0 3 85 0 1 75 14 17 222 18 18 69 4 3 71 7 6 39 2 0 32 chain 43627 chr11 135086622 + 97291075 97291585 MER9a2 513 + 0 513 32367 58 2 1 251 0 4 199 chain 259720 chr11 135086622 + 97299667 97303851 L1PA5 6144 + 2508 5879 7979 572 1220 400 200 0 3 975 1 0 640 0 5 576 chain 378832 chr11 135086622 + 97317987 97322925 HERVL-int 5654 + 0 5654 5508 235 10 12 105 14 15 48 0 4 26 7 487 18 0 4 329 1 11 238 3 4 67 0 4 117 18 20 161 0 2 220 0 203 218 0 1 297 0 7 13 1 0 214 0 3 154 2 0 180 0 1 44 8 10 442 0 4 48 0 2 124 0 1 490 0 1 478 8 9 40 20 1 110 16 17 62 6 7 96 18 17 10 1 2 221 chain 41065 chr11 135086622 + 97421899 97422586 L1PA11 4918 + 3906 4578 33924 81 10 17 327 16 6 45 38 39 54 2 0 7 3 6 15 9 5 9 3 0 5 2 0 8 18 16 8 1 0 13 2 0 11 chain 213656 chr11 135086622 + 97438273 97441136 L1PA8 5853 + 2882 5853 9213 35 0 3 9 8 12 17 0 7 19 0 2 207 1 5 23 1 0 119 0 2 49 3 0 96 39 39 290 0 1 214 0 1 372 1 0 164 4 5 433 12 8 89 0 3 20 0 1 10 0 3 199 4 0 7 1 108 101 8 7 28 0 1 9 1 0 8 2 0 28 0 4 42 1 0 3 10 0 13 17 11 31 3 2 18 3 2 91 chain 63430 chr11 135086622 + 97456761 97457461 L1PA3long 6157 + 5456 6156 25540 700 chain 25861 chr11 135086622 + 97508254 97508537 AluYc 301 + 0 283 47923 283 chain 310223 chr11 135086622 + 97539143 97543211 L1PA8 5853 + 1792 5849 6611 230 22 0 50 9 1 407 3 7 236 17 18 74 0 3 51 1 2 63 0 4 44 0 2 75 3 0 135 0 4 22 4 0 118 0 3 249 0 1 48 1 4 18 8 6 20 0 2 901 1 0 5 0 1 10 0 1 66 0 1 13 1 0 297 0 4 21 0 5 524 5 6 20 1 0 44 2 0 71 1 0 14 21 20 27 2 1 19 1 0 34 4 0 55 chain 11434 chr11 135086622 + 97595049 97595402 L1PB1 5432 + 5117 5430 67859 21 1 0 8 2 1 9 19 13 49 25 23 38 13 4 13 3 0 6 15 6 15 45 40 7 1 0 22 1 0 30 1 0 4 1 0 4 chain 53112 chr11 135086622 + 97636794 97637444 LTR6A 649 + 0 648 28536 285 1 0 150 6 5 208 chain 110601 chr11 135086622 + 97639958 97641301 L1PA7 6471 + 5088 6436 16993 487 0 1 23 0 4 18 1 0 685 2 3 127 chain 7709 chr11 135086622 + 97667594 97667786 LTR12C 1709 + 1010 1208 75604 58 85 91 49 chain 93069 chr11 135086622 + 97693612 97694737 L1PA7 6471 + 4565 5739 19172 78 0 1 592 3 55 7 1 0 12 0 1 43 1 0 260 3 0 125 chain 83941 chr11 135086622 + 97784006 97785073 MER11B 1079 + 0 1062 20821 220 1 6 335 3 0 180 10 0 29 1 3 45 2 3 51 0 1 178 1 0 11 chain 11697 chr11 135086622 + 97845914 97846091 L1MA4 2864 + 2526 2693 67402 117 2 0 32 4 1 10 5 0 7 chain 39407 chr11 135086622 + 97850745 97851280 MLT2A2 560 + 2 560 35075 178 1 0 218 4 15 53 6 19 15 1 0 5 0 1 54 chain 2806 chr11 135086622 + 97885238 97885293 MADE1 96 - 0 96 101620 12 0 41 43 chain 397040 chr11 135086622 + 97922714 97927400 L1PA4 6152 + 0 6151 5196 271 0 1 308 1 0 120 0 2 150 52 1 753 0 1496 391 6 5 440 0 1 263 0 2 149 1 0 994 0 17 787 chain 490388 chr11 135086622 + 98012088 98018505 L1PA7 6471 + 3 6466 3411 333 15 16 59 20 21 20 10 6 484 0 16 312 0 4 200 12 13 399 4 0 463 13 14 65 0 3 88 0 2 38 20 12 360 1 0 133 5 14 18 0 4 155 8 0 135 1 0 4 0 1 89 1 2 11 4 0 46 0 2 25 0 12 72 1 0 250 0 1 27 0 3 66 0 3 928 16 3 55 5 6 136 9 23 248 0 1 44 1 2 111 9 1 63 0 14 239 1 4 257 1 0 148 0 2 8 28 26 143 chain 28864 chr11 135086622 + 98065737 98066198 LTR8 732 + 269 730 43531 44 0 1 93 75 72 192 1 3 56 chain 5154 chr11 135086622 + 98094437 98094493 L1PA7 6471 + 5256 5312 84888 56 chain 96664 chr11 135086622 + 98094493 98095647 L1PA7 6471 + 5314 6469 18695 136 1 0 45 6 7 119 1 3 708 1 0 137 chain 22803 chr11 135086622 + 98111887 98112171 L1PA7 6471 + 5669 5950 52655 233 4 1 47 chain 43072 chr11 135086622 + 98112180 98112682 L1PA7 6471 + 5965 6467 32733 502 chain 7253 chr11 135086622 + 98134961 98135064 L1PREC2 3366 + 506 608 76808 81 6 5 16 chain 35904 chr11 135086622 + 98135860 98136359 LTR12F 595 + 0 595 37472 84 24 0 16 0 119 99 1 0 48 0 1 78 5 6 144 chain 22346 chr11 135086622 + 98151872 98152228 THE1B 368 + 0 368 53347 64 13 14 121 42 52 24 0 1 92 chain 11055 chr11 135086622 + 98204298 98204558 L1PB 1623 + 1325 1576 68478 85 0 2 34 1 0 7 110 100 23 chain 10367 chr11 135086622 + 98237783 98237918 L1PA17 2846 + 2338 2474 69675 7 0 1 31 0 1 6 1 0 90 chain 58279 chr11 135086622 + 98240425 98241175 LTR12 884 + 0 884 26876 78 4 136 164 2 0 425 16 20 61 chain 129065 chr11 135086622 + 98275434 98276845 L1PA2 6032 + 3105 4516 14140 1411 chain 75580 chr11 135086622 + 98345620 98346448 L1PA3long 6157 + 1831 2659 22699 828 chain 85809 chr11 135086622 + 98392604 98393689 L1PA8 5853 + 4779 5853 20486 37 0 1 193 2 0 74 2 3 54 4 0 423 1 0 43 3 1 69 1 0 10 10 9 42 4 3 21 1 0 91 chain 181387 chr11 135086622 + 98435043 98437026 L1PA2 6032 + 4047 6030 10529 1983 chain 73003 chr11 135086622 + 98437026 98437824 L1PA2 6032 + 5232 6030 23241 798 chain 59320 chr11 135086622 + 98446570 98447232 L1PA4 6152 + 5488 6151 26561 658 0 1 4 chain 16568 chr11 135086622 + 98463694 98463976 L1PA8 5853 + 5610 5853 60294 56 2 1 15 1 0 11 1 0 9 0 1 37 2 1 18 2 1 22 1 0 36 36 2 33 chain 403081 chr11 135086622 + 98546235 98551974 L1PB1 5432 + 26 5414 5118 105 0 2 6 3 0 16 5 6 383 3 0 8 11 12 58 1 0 4 1 2 128 0 1 524 0 2 114 11 0 295 0 3 15 4 2 4 0 1 147 0 1 6 1 0 5 8 4 260 3 5 343 4 0 7 2 7 44 1 5 93 0 1 189 1 0 44 13 14 115 2 1 5 0 1 50 0 1 408 0 2 87 0 1 104 0 1 59 2 0 265 3 1 301 0 2 89 10 9 229 1 2 305 303 0 97 0 1 75 3 2 11 12 0 22 1 0 9 1 0 9 17 11 37 3 0 13 6 5 14 1 0 41 8 7 12 4 0 3 9 0 28 2 0 5 1 0 14 2 0 27 1 0 18 1 0 13 1 0 10 chain 83406 chr11 135086622 + 98604346 98605274 L1PA3long 6157 + 5229 6157 20932 928 chain 14297 chr11 135086622 + 98626528 98626885 LOR1b 457 + 42 435 63203 15 0 28 9 21 0 37 15 13 31 44 73 81 56 58 48 chain 172283 chr11 135086622 + 98648587 98650480 L1PA3long 6157 + 4253 6147 10986 1880 0 1 13 chain 3949 chr11 135086622 + 98658067 98658116 MLT1A0 366 + 265 314 91768 49 chain 5436 chr11 135086622 + 98690447 98690509 THE1D-int 1627 + 886 948 83527 62 chain 141012 chr11 135086622 + 98699677 98701375 L1PA7 6471 + 4762 6469 13024 187 0 1 664 0 3 208 0 1 11 0 3 611 1 0 5 0 2 11 chain 5711 chr11 135086622 + 98733887 98733966 LTR28 1034 + 245 324 82286 20 2 1 39 0 1 18 chain 87395 chr11 135086622 + 98745574 98746706 L1PA8 5853 + 4727 5853 20157 97 0 1 38 1 0 147 2 0 18 0 1 535 1 0 41 9 7 66 2 1 9 1 0 72 1 0 78 0 1 14 chain 469941 chr11 135086622 + 98747916 98754002 L1PA7 6471 + 31 6465 3861 170 13 12 116 23 193 44 2 3 130 14 127 165 9 8 259 0 40 189 1 4 7 3 0 127 0 1 125 0 1 7 6 5 501 0 2 203 0 9 160 2 6 43 0 3 4 0 1 464 0 8 199 0 1 60 7 12 44 0 2 36 2 1 408 0 1 787 0 3 612 18 0 93 0 1 8 0 1 90 3 2 4 0 1 91 0 4 250 4 5 575 2 0 6 chain 15319 chr11 135086622 + 98762196 98762382 MER61-int 3695 + 2194 2386 61884 24 0 6 162 chain 5124 chr11 135086622 + 98773699 98773761 L1MC 810 + 615 677 85044 62 chain 3044 chr11 135086622 + 98774298 98774392 L1MC2 1988 + 1886 1970 99380 23 47 37 24 chain 22260 chr11 135086622 + 98906844 98907206 THE1B 368 + 10 368 53464 54 45 46 62 12 11 16 4 0 169 chain 3120 chr11 135086622 + 98908670 98908703 THE1B-int 1605 - 88 121 98631 33 chain 177599 chr11 135086622 + 98918229 98920223 L1PA4 6152 + 4158 6152 10699 287 0 1 926 1 0 17 0 1 572 1 0 190 chain 5821 chr11 135086622 + 98984741 98984860 L1MA1 4479 + 240 360 81816 29 30 28 52 0 3 8 chain 299677 chr11 135086622 + 98996452 99000000 L1P1 4361 + 4 3554 6842 726 0 1 278 0 1 4 6 5 1010 0 1 47 0 1 302 0 1 201 0 1 620 2 0 300 1 0 51 chain 223170 chr11 135086622 + 99000017 99002583 L1PA5 6144 + 3570 6144 8954 201 0 1 151 1 0 699 1 0 181 5 0 278 0 1 490 0 2 316 0 1 90 6 16 147 chain 14145 chr11 135086622 + 99003435 99003747 THE1C 375 + 25 336 63386 22 1 2 20 46 47 70 44 47 14 8 2 87 chain 49084 chr11 135086622 + 99013175 99013722 L1PA4 6152 + 5600 6152 29913 541 0 5 6 chain 9875 chr11 135086622 + 99043340 99043446 L1PA2 6032 + 5925 6031 70668 106 chain 122979 chr11 135086622 + 99131270 99132982 L1PA10 4194 + 2448 4159 15027 44 16 15 121 16 18 30 13 17 32 16 19 5 1 0 444 3 4 199 7 0 44 1 4 632 1 0 41 3 0 33 1 0 9 chain 31902 chr11 135086622 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12156 chr11 135086622 + 99975218 99975402 THE1D-int 1627 + 1237 1422 66559 72 4 5 13 6 7 5 1 0 83 chain 237932 chr11 135086622 + 99997348 100000000 L1PA3long 6157 + 3337 5990 8524 607 1 2 2044 chain 19145 chr11 135086622 + 100024052 100024398 THE1D 372 + 20 350 57401 34 66 49 63 25 27 31 1 0 126 chain 73305 chr11 135086622 + 100031207 100032063 MER11D 897 + 16 897 23259 486 1 3 88 2 25 279 chain 95831 chr11 135086622 + 100049580 100050635 L1PA3long 6157 + 5102 6157 18793 1055 chain 82663 chr11 135086622 + 100233797 100234806 L1PA7 6471 + 5454 6470 21090 160 0 3 38 0 4 39 0 2 451 0 1 31 0 1 106 1 0 16 10 3 7 3 0 136 0 7 11 chain 10609 chr11 135086622 + 100235316 100235455 LTR22A 463 + 0 142 69212 23 0 1 60 1 2 8 0 1 47 chain 527134 chr11 135086622 + 100256503 100262946 L1PA7 6471 + 0 6467 1949 404 1 2 132 10 14 9 0 11 73 17 18 361 10 7 64 1 0 5 0 3 393 0 4 646 8 1 479 6 7 362 0 1 486 3 4 1139 1 0 996 0 3 43 2 1 87 1 6 32 0 1 422 0 1 250 chain 549229 chr11 135086622 + 100285746 100291751 L1PA2 6032 + 4 6019 797 1347 1 0 1218 1 0 147 0 1 1512 0 4 1640 0 7 139 chain 12166 chr11 135086622 + 100387480 100387625 L1PA11 4918 + 2015 2163 66535 69 0 3 76 chain 545385 chr11 135086622 + 100409041 100415069 L1PA2 6032 + 0 6027 1013 64 10 0 516 0 4 851 0 2 2841 0 1 976 0 1 665 0 1 105 chain 184248 chr11 135086622 + 100424703 100427069 L1PA8 5853 + 3469 5845 10371 1193 1 0 4 0 1 256 5 6 45 0 1 36 0 3 10 0 1 182 21 32 192 2 1 30 4 5 97 1 0 41 5 3 74 9 6 30 0 1 21 2 1 19 1 0 85 chain 41437 chr11 135086622 + 100431101 100431559 L1PA4 6152 + 5685 6143 33711 458 chain 551811 chr11 135086622 + 100451858 100457873 L1PA2 6032 + 0 6016 616 1280 0 5 913 1 0 2870 3 0 948 chain 62641 chr11 135086622 + 100464821 100465505 L1PA3long 6157 + 5258 5943 25723 113 0 1 571 chain 477458 chr11 135086622 + 100488705 100494198 L1PA4 6152 + 1 5521 3689 235 0 5 554 5 6 218 0 1 1743 0 1 418 0 1 220 7 11 523 0 3 92 0 2 351 3 0 715 0 11 209 0 1 200 chain 84142 chr11 135086622 + 100525902 100527317 L1PB1 5432 + 31 5424 20771 179 24 13 140 51 45 47 0 9 104 2 4032 16 4 0 4 0 1 362 0 1 119 7 0 14 3 0 16 2 1 13 29 22 51 2 1 16 1 0 44 1 0 15 3 0 7 15 6 18 8 5 14 2 0 24 2 1 20 1 0 13 1 0 16 1 0 4 chain 86060 chr11 135086622 + 100530607 100531893 L1PA13 3608 + 2185 3482 20423 39 8 12 68 0 15 160 19 20 485 1 0 5 0 1 15 9 8 64 8 11 31 0 2 11 2 0 27 1 0 25 0 3 41 0 4 41 11 9 14 1 0 40 1 0 21 6 1 32 13 10 36 14 10 22 1 0 14 chain 9404 chr11 135086622 + 100553214 100553410 LTR51 675 + 1 260 71696 59 56 60 33 2 61 46 chain 226931 chr11 135086622 + 100606085 100609507 L1PA11 4918 + 1042 4517 8842 86 19 0 80 1 0 91 0 2 81 4 0 393 0 1 36 1 2 125 317 372 214 0 4 105 2 0 9 0 1 48 1 0 4 0 1 949 7 6 142 5 6 122 3 4 74 31 32 205 1 10 10 2 3 68 6 0 38 10 28 13 2 0 65 2 0 16 1 0 20 4 0 9 chain 37210 chr11 135086622 + 100623476 100623966 MER9a1 513 + 0 513 36608 78 24 25 141 2 24 245 chain 495952 chr11 135086622 + 100653028 100658521 L1PA3long 6157 + 8 6153 3271 86 0 526 161 0 128 1650 0 1 656 0 1 471 0 1 1413 6 1 1050 chain 101614 chr11 135086622 + 100658565 100660148 L1PB1 5432 + 3838 5393 18115 154 13 24 54 6 0 46 0 4 215 0 1 197 0 1 94 3 0 133 14 11 17 26 26 171 0 3 5 14 11 98 3 0 10 6 5 20 1 0 4 3 2 14 5 1 9 3 1 51 2 1 16 1 0 44 1 0 15 3 0 8 16 7 15 3 1 5 1 0 14 2 0 24 1 0 4 2 0 5 0 2 12 chain 12644 chr11 135086622 + 100698486 100698649 AluSp 311 + 93 250 65724 85 6 0 72 chain 9762 chr11 135086622 + 100787363 100787486 THE1D 372 + 245 368 70907 123 chain 18310 chr11 135086622 + 100839630 100839855 7SK 245 + 1 227 58349 177 0 1 48 chain 199641 chr11 135086622 + 100842666 100845482 L1PB1 5432 + 2162 5414 9730 259 2 1 26 0 4 45 1 0 159 1 0 53 0 1 132 2 0 19 8 9 15 3 517 316 3 9 67 0 1 167 0 1 29 2 1 361 3 0 15 12 17 159 1 0 84 0 1 43 0 1 41 0 1 58 0 4 149 0 1 175 1 2 10 68 0 23 25 23 6 2 0 53 7 6 11 2 1 42 1 0 16 14 1 30 8 5 14 2 0 24 4 3 18 1 0 13 2 1 9 chain 3599 chr11 135086622 + 100875856 100875896 MER58B 340 + 151 191 94433 40 chain 12990 chr11 135086622 + 101024761 101024912 L1PA7 6471 + 6318 6467 65129 141 2 0 8 chain 147357 chr11 135086622 + 101068172 101070009 L1PA7 6471 + 4610 6470 12524 193 5 9 143 2 1 49 0 1 620 0 6 68 0 2 285 7 8 190 11 14 36 0 2 215 1 6 12 chain 533702 chr11 135086622 + 101070026 101076471 L1PA7 6471 + 0 6465 1670 411 0 1 338 0 3 309 1 0 997 0 1 520 0 1 58 1 2 58 0 2 65 10 12 75 0 1 9 1 0 76 1 0 370 4 0 187 6 1 80 1 4 377 5 9 35 0 1 810 0 4 345 0 3 31 0 1 421 5 0 82 2 3 24 0 6 502 0 2 228 chain 75571 chr11 135086622 + 101105529 101106444 L1PA7 6471 + 4761 5687 22701 365 0 1 472 0 4 11 1 4 11 8 11 47 chain 63773 chr11 135086622 + 101106455 101107219 L1PA7 6471 + 5700 6466 25457 488 0 3 267 1 0 8 chain 111749 chr11 135086622 + 101157292 101158966 THE1C-int 1605 + 2 1605 16842 14 1 2 164 1 2 145 21 28 83 90 16 285 16 10 15 0 1 4 1 0 217 48 25 88 5 14 37 1 2 55 7 8 170 8 14 66 0 5 63 0 1 69 chain 10522 chr11 135086622 + 101243790 101243910 L1PA6 6164 + 6041 6161 69375 120 chain 36193 chr11 135086622 + 101244309 101244771 LTR2 463 + 0 463 37274 360 14 15 88 chain 45602 chr11 135086622 + 101246852 101247434 HERVIP10FH-int 2884 + 208 783 31260 192 8 0 65 0 2 129 0 1 26 1 0 156 1 0 4 chain 354545 chr11 135086622 + 101247508 101251837 Harlequin-int 5206 + 864 5190 5860 37 1 0 106 1 0 172 1 2 524 1 6 514 0 1 1250 10 4 5 0 2 142 3 2 651 1 0 552 39 46 64 0 1 65 0 1 80 7 1 87 6 1 10 chain 37761 chr11 135086622 + 101251845 101252307 LTR2 463 + 0 463 36235 362 12 13 88 chain 26161 chr11 135086622 + 101302024 101302383 THE1A 353 + 0 353 47484 4 1 0 43 7 8 37 1 0 133 4 0 52 2 1 75 chain 10644 chr11 135086622 + 101366230 101366353 L1P3 4156 + 3162 3285 69137 123 chain 83760 chr11 135086622 + 101377708 101378687 L1PA5 6144 + 1450 2504 20858 116 0 63 152 1 2 325 0 1 84 0 2 179 0 8 122 chain 29699 chr11 135086622 + 101419278 101419588 AluYb8 318 + 1 311 42368 310 chain 8030 chr11 135086622 + 101518213 101518324 L1MA1 4479 + 4031 4139 74804 47 1 0 26 3 1 34 chain 126466 chr11 135086622 + 101543355 101544887 L1PA7 6471 + 4943 6468 14489 148 11 0 45 9 6 7 0 2 336 0 1 126 0 3 696 0 1 154 chain 508199 chr11 135086622 + 101566585 101573018 L1PA7 6471 + 0 6470 2836 87 0 1 155 0 10 114 6 7 4 1 0 32 1 2 68 30 34 68 4 5 167 1 0 27 7 5 18 7 12 9 0 1 321 1 0 209 0 1 312 13 11 16 8 14 11 1 4 333 6 5 100 5 6 221 0 3 189 2 0 50 4 0 472 1 0 240 0 2 5 9 7 67 1 0 78 2 0 499 0 1 278 0 3 518 0 1 818 1 0 89 3 15 177 0 1 567 chain 23284 chr11 135086622 + 101596408 101596895 L1MA3 4352 + 3903 4352 51955 31 2 6 122 14 15 16 29 13 7 3 0 63 11 0 59 4 0 14 11 9 21 39 36 13 6 2 22 chain 510953 chr11 135086622 + 101638966 101645043 L1PA6 6164 + 6 6160 2722 253 1 2 5 1 0 49 20 88 97 9 5 5 0 3 740 4 9 211 0 1 856 3 4 348 1 2 506 3 1 338 0 1 771 0 2 1115 0 2 582 3 4 148 2 0 6 chain 117822 chr11 135086622 + 101645061 101646752 L1PA10 4194 + 2438 4150 15916 40 19 26 9 0 1 32 0 1 6 7 6 17 39 36 18 1 0 85 0 1 11 1 3 98 9 3 393 14 15 200 2 1 17 5 25 556 7 8 42 29 28 34 chain 76235 chr11 135086622 + 101695062 101696030 LTR5_Hs 974 + 0 974 22503 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 553918 chr11 135086622 + 101696030 101702780 HERVK-int 6823 + 0 6582 487 5 1 0 11 1 0 3 1 0 23 1 0 20 1 0 38 1 0 21 15 12 17 12 0 306 1 0 204 2 0 28 1 0 19 1 0 312 1 0 440 1 0 369 2 0 7 1 0 1685 63 63 823 0 6 1103 4 3 10 1 0 198 1 0 21 1 0 101 1 0 36 1 0 124 1 0 49 3 0 5 1 0 7 1 0 3 1 0 74 3 1 7 1 0 24 17 11 11 1 0 20 2 0 3 1 0 8 1 0 5 172 101 9 2 0 12 1 0 14 3 1 11 2 0 30 8 3 7 1 0 3 1 0 10 10 6 10 11 5 7 1 0 8 1 0 5 1 0 26 1 0 4 1 0 12 35 26 17 1 0 1 1 0 12 5 0 6 chain 76366 chr11 135086622 + 101703560 101704528 LTR5_Hs 974 + 0 974 22475 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 22831 chr11 135086622 + 101708612 101708955 THE1B 368 + 0 368 52615 45 0 15 81 0 4 27 3 2 27 35 42 125 chain 28365 chr11 135086622 + 101719807 101720121 AluYa5 310 + 0 307 44322 97 2 0 29 5 0 181 chain 26604 chr11 135086622 + 101778344 101778714 THE1B 368 + 0 368 46825 18 0 1 60 2 3 87 1 0 29 13 11 21 1 0 138 chain 6865 chr11 135086622 + 101780334 101780414 THE1B 368 + 59 139 78085 80 chain 21318 chr11 135086622 + 101796797 101797153 MSTB 430 + 2 402 54738 53 5 4 58 8 7 32 2 0 9 6 50 32 14 15 31 1 0 11 0 5 48 1 0 45 chain 4465 chr11 135086622 + 101798692 101798763 LTR60 593 + 8 78 88524 39 11 10 21 chain 55043 chr11 135086622 + 101799873 101800483 L1PA3long 6157 + 5544 6157 27861 598 0 3 12 chain 22239 chr11 135086622 + 101801759 101802099 L1PA7 6471 + 5353 5621 53493 208 72 0 60 chain 6244 chr11 135086622 + 101802099 101802170 L1PA7 6471 + 5627 5698 80192 71 chain 64520 chr11 135086622 + 101802170 101802935 L1PA7 6471 + 5700 6469 25306 139 0 1 51 6 7 377 0 2 192 chain 24796 chr11 135086622 + 101811361 101811735 THE1C 375 + 0 375 49594 109 5 6 5 1 0 18 1 5 36 22 19 177 chain 15113 chr11 135086622 + 101829544 101829894 L1PB1 5432 + 5107 5422 62139 7 7 0 24 1 0 8 1 0 12 18 12 50 18 16 43 11 5 12 2 0 6 1 0 9 8 0 15 9 6 14 0 5 19 1 0 21 1 0 9 0 1 5 2 0 16 chain 172075 chr11 135086622 + 101837158 101839136 L1PA3long 6157 + 4202 6157 10993 152 0 4 538 31 0 414 0 4 510 1 0 189 1 2 142 chain 135183 chr11 135086622 + 101841921 101843454 L1PA5 6144 + 4605 6137 13527 53 1 0 1479 chain 552185 chr11 135086622 + 101852489 101858624 L1PA3long 6157 + 5 6157 596 548 1 0 187 1 2 2449 1 0 737 0 1 2117 0 17 94 chain 21376 chr11 135086622 + 102003405 102003666 AluSp 311 + 10 269 54668 122 2 0 137 chain 28467 chr11 135086622 + 102037958 102038266 AluYa5 310 + 0 310 44172 24 0 2 284 chain 50582 chr11 135086622 + 102086556 102087111 L1PA3long 6157 + 5601 6156 29356 555 chain 3768 chr11 135086622 + 102121080 102121150 Tigger7 736 + 28 98 93095 24 7 8 19 1 0 19 chain 124566 chr11 135086622 + 102126660 102128200 THE1A-int 1579 + 0 1570 14768 37 0 1 41 0 4 113 0 5 150 0 1 302 0 3 226 0 3 315 16 29 268 0 1 14 1 0 57 chain 28440 chr11 135086622 + 102183794 102184099 AluYa5 310 + 0 304 44208 132 1 0 172 chain 6335 chr11 135086622 + 102326584 102326662 MER75A 77 + 0 77 79883 51 1 0 26 chain 33986 chr11 135086622 + 102329531 102329937 L1PA5 6144 + 5727 6134 38714 83 0 1 160 1 2 58 1 0 103 chain 54851 chr11 135086622 + 102432577 102433318 THE1-int 844 + 44 772 27927 62 1 0 17 7 4 151 16 10 363 5 7 30 19 14 70 chain 498860 chr11 135086622 + 102438622 102444690 L1PA6 6164 + 0 6156 3167 63 6 5 126 1 2 313 2 1 34 4 0 41 7 6 123 0 49 176 0 25 235 1 0 130 49 53 448 1 0 193 0 1 111 0 1 53 0 2 73 0 2 33 0 1 25 0 1 399 1 2 442 1 3 13 2 0 5 7 1 508 0 5 247 1 2 843 0 1 445 2 1 72 1 0 55 0 3 113 1 0 305 0 2 112 2 4 95 1 2 9 1 4 137 chain 40463 chr11 135086622 + 102444703 102445176 L1PA5 6144 + 5668 6139 34339 328 1 0 25 1 0 118 chain 3639 chr11 135086622 + 102506657 102506699 L1P3 4156 + 1366 1408 94103 42 chain 3839 chr11 135086622 + 102518183 102518231 L1MB2 1706 + 1641 1692 92567 43 0 3 5 chain 179425 chr11 135086622 + 102539326 102541813 L1PBa 3878 + 49 2484 10616 11 3 0 3 1 0 12 24 17 8 1 0 46 67 19 47 1 0 20 9 6 17 0 2 267 1 0 269 12 16 28 0 3 143 7 4 161 0 1 289 0 4 172 4 0 11 10 5 100 2 10 33 0 1 463 0 2 217 1 2 6 1 0 20 chain 11174 chr11 135086622 + 102546101 102546239 MER34A1 583 + 8 146 68298 138 chain 24642 chr11 135086622 + 102644516 102644817 AluYk4 311 + 12 309 49811 111 3 0 80 0 1 92 2 0 13 chain 3807 chr11 135086622 + 102678797 102678838 MER5A1 166 + 46 87 92792 41 chain 5114 chr11 135086622 + 102781966 102782030 Tigger3b 1229 + 14 81 85086 6 0 3 58 chain 48287 chr11 135086622 + 102804643 102805257 L1PB1 5432 + 4493 5103 30187 121 10 7 365 4 3 114 chain 4163 chr11 135086622 + 102897552 102897607 L1PB1 5432 + 5369 5422 90366 24 1 0 11 1 0 18 chain 16469 chr11 135086622 + 102897663 102897951 THE1B 368 + 7 306 60413 104 0 3 6 2 0 11 7 11 34 0 2 6 34 30 13 8 16 63 chain 50829 chr11 135086622 + 102910273 102910847 L1PA5 6144 + 5567 6142 29266 243 0 1 331 chain 4346 chr11 135086622 + 102915598 102915648 L1M3b 1512 + 923 973 89199 50 chain 59236 chr11 135086622 + 102969688 102970344 L1PA4 6152 + 3849 4500 26590 613 5 0 38 chain 19188 chr11 135086622 + 102976188 102976391 L1HS 6032 + 5829 6032 57363 203 chain 144652 chr11 135086622 + 102979256 102980981 L1PA7 6471 + 4742 6469 12716 26 0 3 850 1 0 122 2 1 215 0 1 509 chain 32133 chr11 135086622 + 103028809 103029166 L1PA3long 6157 + 5800 6157 40242 357 chain 10790 chr11 135086622 + 103039730 103039847 L1PA2 6032 + 5913 6030 68880 117 chain 46443 chr11 135086622 + 103072378 103072918 L1PA5 6144 + 5601 6144 30866 278 0 1 175 0 2 87 chain 310922 chr11 135086622 + 103261156 103265032 L1PA8 5853 + 142 4007 6589 86 1 0 77 18 23 1475 0 4 98 0 2 111 16 0 73 0 4 11 0 1 238 8 4 482 5 8 95 0 4 577 0 13 133 2 4 67 28 0 275 chain 67480 chr11 135086622 + 103271821 103272571 L1PA5 6144 + 5382 6132 24583 750 chain 50245 chr11 135086622 + 103295294 103295968 LTR76 689 + 0 689 29467 5 0 1 19 2 0 6 1 18 71 12 10 264 1 0 214 0 1 28 0 1 51 chain 36129 chr11 135086622 + 103336918 103337415 MER9a3 513 + 0 513 37323 18 4 17 76 0 1 144 6 5 29 7 9 134 4 5 75 chain 6762 chr11 135086622 + 103342781 103342887 LTR12F 595 + 485 595 78440 33 13 17 60 chain 66127 chr11 135086622 + 103370402 103371729 L1M1 2793 + 493 1728 24928 6 1 0 11 1 0 9 6 3 12 8 6 14 2 0 8 3 0 5 1 0 12 1 0 11 2 0 5 237 150 13 11 8 6 2 0 30 1 0 25 0 3 9 1 0 54 13 10 45 0 4 51 1 0 36 3 12 36 1 0 85 16 15 24 0 6 31 2 0 21 11 8 118 0 1 225 0 5 21 0 2 22 2 1 56 chain 12753 chr11 135086622 + 103396788 103396957 L1PB4 2604 + 2398 2568 65516 89 0 2 63 1 0 16 chain 5195 chr11 135086622 + 103407321 103407382 tRNA-Gln-CAA_ 72 + 11 72 84706 61 chain 105908 chr11 135086622 + 103415031 103416301 L1PA6 6164 + 4869 6156 17576 259 4 0 164 7 28 506 0 1 37 1 0 110 2 3 5 1 0 174 chain 36947 chr11 135086622 + 103425907 103426364 MER9a3 513 + 0 472 36775 18 0 2 12 0 12 26 1 0 41 0 1 65 0 1 80 1 0 178 0 1 35 chain 421671 chr11 135086622 + 103501478 103506608 L1PA7 6471 + 1282 6468 4862 349 7 8 35 13 14 171 0 1 300 0 5 197 10 14 8 1 0 4 0 1 252 1 0 17 0 15 427 0 4 396 1 0 29 1 0 481 0 11 327 1 4 309 3 10 153 3 5 309 0 1 214 0 1 212 0 1 54 0 3 684 2 1 159 chain 33206 chr11 135086622 + 103572041 103572502 LTR2 463 + 0 463 39342 106 10 11 242 33 35 13 1 0 56 chain 266492 chr11 135086622 + 103574275 103577571 Harlequin-int 5206 + 125 3426 7791 17 3 1 94 0 5 52 2 1 5 1 0 70 0 3 109 0 1 178 2 0 16 2 1 16 0 1 427 1 2 83 0 3 220 0 1 69 7 8 330 1 0 730 10 0 279 1 0 4 1 2 232 0 1 38 1 2 195 6 11 94 chain 27897 chr11 135086622 + 103578651 103579117 LTR2 463 + 7 463 45043 158 33 25 60 6 3 46 5 6 5 1 0 49 37 39 9 1 0 56 chain 428853 chr11 135086622 + 103611231 103616555 L1PA6 6164 + 1 5239 4766 274 11 1 26 120 19 237 0 1 8 1 0 388 1 0 117 1 0 380 6 5 40 0 2 695 0 2 17 0 2 118 0 1 212 0 3 633 15 9 465 1 8 52 0 1 24 0 1 362 1 0 232 26 30 412 1 0 248 4 3 23 0 13 94 0 1 79 chain 7168 chr11 135086622 + 103611551 103611638 L1PA6 6164 - 4838 4925 77043 87 chain 32259 chr11 135086622 + 103621254 103621677 MLT2A1 477 + 0 469 40138 141 1 2 26 1 5 209 0 42 33 1 0 11 chain 32300 chr11 135086622 + 103675491 103675917 L1PA8 5853 + 5432 5853 40113 132 1 0 44 2 0 74 1 0 5 14 13 60 1 0 16 0 1 76 chain 160389 chr11 135086622 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103848327 103848875 MER41A 554 + 0 553 33321 53 10 11 224 0 9 97 12 14 126 7 0 19 chain 131775 chr11 135086622 + 103855402 103857172 L1PA10 4194 + 2403 4150 13847 201 13 14 11 0 1 26 3 1 19 3 7 278 4 5 475 10 7 644 49 24 34 chain 23759 chr11 135086622 + 103900224 103900572 THE1B 368 + 0 353 51183 15 2 0 22 0 5 65 13 14 51 2 1 18 1 3 159 chain 48430 chr11 135086622 + 103902462 103903003 L1PA4 6152 + 5610 6152 30139 428 0 1 113 chain 512732 chr11 135086622 + 103910305 103917094 L1PA7 6471 + 5 6469 2634 190 4 3 261 0 21 81 0 1 85 5 0 229 1 2 140 30 138 753 10 11 341 1 0 47 4 5 319 2 0 229 18 0 639 1 0 37 7 11 180 450 0 202 1 3 397 0 1 528 0 6 120 1 0 168 4 5 199 0 1 139 2 1 71 0 1 51 0 3 512 0 1 319 0 2 11 chain 5878 chr11 135086622 + 103932207 103932330 Tigger5 388 + 102 215 81567 29 18 7 40 15 16 21 chain 36824 chr11 135086622 + 103957260 103957659 L1PA3long 6157 + 4539 4938 36866 399 chain 50205 chr11 135086622 + 103976890 103977501 L1PA8 5853 + 2891 3502 29482 196 1 0 17 9 11 101 1 0 286 chain 44024 chr11 135086622 + 103982490 103983242 L1PA13 3608 + 2794 3522 32114 62 5 6 270 1 0 8 27 24 32 0 1 63 17 15 60 1 0 21 1 0 21 25 22 45 8 4 15 1 0 5 2 1 17 28 20 12 1 0 4 chain 3305 chr11 135086622 + 104006282 104006325 MER5A 189 + 147 189 96966 4 1 0 38 chain 180675 chr11 135086622 + 104100240 104102291 L1PA4 6152 + 3264 5354 10557 318 0 15 92 1 0 146 1 0 668 0 26 825 chain 57810 chr11 135086622 + 104108163 104108835 L1PA5 6144 + 5089 5768 27016 74 1 4 127 0 1 4 1 4 465 chain 75908 chr11 135086622 + 104116480 104117786 L1PB 1623 + 485 1442 22605 177 3 0 5 1 4 9 347 0 563 2 1 61 1 0 137 chain 25028 chr11 135086622 + 104116680 104117002 THE1A 353 + 0 333 49237 35 6 18 57 1 0 223 chain 27982 chr11 135086622 + 104139755 104140079 AluYb8 318 + 0 301 44898 118 23 0 183 chain 4335 chr11 135086622 + 104141342 104141389 U6 107 + 0 47 89265 47 chain 8797 chr11 135086622 + 104154811 104154918 MER58B 340 + 220 327 72994 107 chain 149381 chr11 135086622 + 104193801 104195647 SVA_F 1814 + 161 1814 12396 24 0 1 694 0 1 16 129 1 49 18 32 142 1 0 17 79 0 666 1 0 10 chain 11746 chr11 135086622 + 104194536 104194659 SVA_F 1814 + 1137 1260 67319 123 chain 7005 chr11 135086622 + 104194892 104194970 SVA_F 1814 + 1011 1089 57700 78 chain 119787 chr11 135086622 + 104211624 104213438 L1P1 4361 + 2827 4317 15569 267 0 1 75 1 0 267 2 0 140 0 1 96 3 0 6 0 3 5 325 0 84 0 1 174 1 3 32 1 2 164 1 0 157 1 0 12 chain 5933 chr11 135086622 + 104252582 104252649 5S 121 + 24 91 81349 67 chain 85743 chr11 135086622 + 104268168 104269230 L1PA7 6471 + 3781 4834 20493 55 8 1 94 1 0 384 4 2 321 0 1 195 chain 12700 chr11 135086622 + 104278996 104279154 THE1B-int 1605 + 1447 1605 65618 158 chain 13357 chr11 135086622 + 104324673 104324887 L1PA14 3548 + 3251 3456 64531 38 2 3 40 1 0 11 5 1 32 2 0 17 1 0 5 1 0 16 1 0 42 chain 52846 chr11 135086622 + 104339145 104340001 LTR12 884 + 0 884 28624 32 1 2 5 1 0 41 0 132 164 2 0 80 35 36 85 104 0 131 1 0 68 16 18 90 chain 4934 chr11 135086622 + 104339638 104339695 LTR12 884 + 623 680 73335 57 chain 37763 chr11 135086622 + 104437807 104438211 L1PA3long 6157 + 5201 5605 36234 404 chain 71428 chr11 135086622 + 104440532 104441409 L1PA7 6471 + 5583 6464 23667 34 1 4 743 1 2 98 chain 67812 chr11 135086622 + 104447171 104448235 L1PA11 4918 + 3549 4578 24491 111 3 0 70 0 3 51 1 2 55 0 2 341 14 20 125 2 0 4 13 0 62 16 11 69 9 7 6 1 0 19 52 34 13 1 0 13 2 0 11 chain 11782 chr11 135086622 + 104490193 104490338 LTR8 732 + 587 732 67247 145 chain 86195 chr11 135086622 + 104500000 104501071 L1PA8A 6298 + 5198 6277 20389 94 1 0 5 1 2 175 4 5 8 0 4 350 0 1 71 0 1 268 1 8 7 6 0 80 chain 49023 chr11 135086622 + 104544456 104545368 L1PA7 6471 + 5868 6470 29943 356 4 7 21 313 0 218 chain 14025 chr11 135086622 + 104601256 104601610 L1PB1 5432 + 5105 5422 63552 11 7 0 22 1 0 4 3 2 10 28 22 44 5 4 13 1 0 44 1 0 15 28 17 11 27 22 24 1 0 21 1 0 13 1 0 18 chain 56583 chr11 135086622 + 104605196 104605910 L1PA7 6471 + 5743 6461 27395 355 4 6 260 1 2 31 11 12 52 chain 58622 chr11 135086622 + 104616568 104617300 L1PA7 6471 + 5242 5968 26781 86 14 5 256 10 14 21 1 0 79 0 1 227 1 0 37 chain 20530 chr11 135086622 + 104746202 104746462 L1PA6 6164 + 5900 6162 55743 76 1 2 32 0 1 151 chain 45055 chr11 135086622 + 104747916 104748463 MER41A 554 + 0 554 31549 196 0 1 18 0 6 333 chain 7279 chr11 135086622 + 104749212 104749324 MER30 238 + 131 238 76732 7 2 0 61 7 4 35 chain 34298 chr11 135086622 + 104781650 104782159 PRIMA4_LTR 623 + 0 623 38497 175 0 23 55 10 12 96 28 115 36 0 1 33 8 9 68 chain 3698 chr11 135086622 + 104864059 104864310 L1MC1 2226 + 1584 1832 93618 23 194 191 34 chain 28316 chr11 135086622 + 104884735 104885143 L1PA8 5853 + 5447 5852 44386 22 0 3 36 7 8 48 2 1 46 3 1 67 1 0 9 2 1 49 4 3 19 1 0 92 chain 5133 chr11 135086622 + 104885471 104885587 L1PB1 5432 + 5308 5424 85001 18 9 6 14 2 0 16 1 8 21 1 0 13 6 5 15 chain 3535 chr11 135086622 + 104889561 104889607 MER5A1 166 + 60 106 94983 46 chain 452643 chr11 135086622 + 104926872 104933150 L1PA8A 6298 + 34 6272 4315 6 1 0 16 1 0 11 52 38 14 0 3 5 16 5 15 2 1 9 2 1 12 68 59 6 1 0 7 1 0 8 23 18 27 16 15 20 8 0 77 2 0 15 1 0 8 9 7 27 1 0 48 1 0 257 0 1 32 8 4 66 18 14 52 1 0 90 5 10 64 3 0 30 15 13 357 0 2 117 1 0 463 0 17 117 1 0 287 18 0 458 0 1 141 0 1 288 1 0 19 0 4 152 0 2 127 1 0 88 0 9 76 0 1 108 1 2 374 1 2 137 2 1 328 1 0 8 0 1 27 1 2 421 13 11 190 2 0 84 0 2 152 0 6 205 8 7 86 0 6 240 chain 76615 chr11 135086622 + 104972568 104973572 MER11C 1089 + 0 1048 22411 263 1 4 52 1 18 178 0 13 8 65 67 171 0 8 261 0 1 4 chain 546483 chr11 135086622 + 105016295 105022319 L1PA3long 6157 + 1 6156 942 6 3 0 53 0 1 91 0 1 173 0 3 381 1 0 71 0 128 303 0 1 994 0 2 2348 1 0 1599 chain 6319 chr11 135086622 + 105083455 105083537 L1PA10 4194 + 1603 1683 79941 31 2 0 49 chain 73724 chr11 135086622 + 105264850 105265754 LTR5_Hs 974 + 0 912 23162 100 0 1 46 5 4 307 0 4 16 0 2 410 0 2 20 chain 24404 chr11 135086622 + 105299683 105300134 L1PA8 5853 + 5413 5853 50164 151 28 27 17 2 0 51 10 0 9 0 1 9 61 63 15 6 5 92 chain 113462 chr11 135086622 + 105336970 105338535 L1PA11 4918 + 2930 4504 16615 100 2 20 329 37 38 11 1 3 235 1 0 357 0 1 54 1 0 250 5 0 60 7 6 13 11 9 58 2 0 15 1 0 15 chain 110163 chr11 135086622 + 105342878 105344366 L1PA8 5853 + 4370 5853 17062 631 1 0 8 2 0 48 5 4 121 0 1 25 0 3 27 2 5 121 4 4 196 1 0 44 2 0 70 2 1 14 40 38 9 2 1 21 1 0 91 chain 68949 chr11 135086622 + 105349250 105350009 L1PA3long 6157 + 5398 6157 24224 759 chain 89355 chr11 135086622 + 105413250 105414245 L1PA4 6152 + 4350 5345 19787 995 chain 2593 chr11 135086622 + 105460916 105460951 L1MA3 4352 + 90 124 103041 14 1 0 20 chain 88640 chr11 135086622 + 105462113 105463094 L1PA3long 6157 + 5157 6157 19912 205 0 3 533 1 0 75 0 17 167 chain 16511 chr11 135086622 + 105471621 105471847 L1PA8 5853 + 5629 5853 60355 50 1 0 9 1 0 52 2 1 11 0 2 6 1 0 93 chain 3575 chr11 135086622 + 105529715 105529806 L1PREC2 3366 + 2932 3006 94633 19 4 1 11 24 10 33 chain 22174 chr11 135086622 + 105580187 105580460 L1PA7 6471 + 6186 6459 53602 273 chain 11969 chr11 135086622 + 105583799 105583985 Tigger3b 1229 + 940 1158 66886 16 6 7 18 0 1 13 0 16 62 8 22 63 chain 32252 chr11 135086622 + 105656227 105656634 L1PA7 6471 + 5165 5571 40145 30 2 3 146 7 5 222 chain 13429 chr11 135086622 + 105717887 105718037 L1PA3long 6157 + 5799 5950 64420 90 0 1 60 chain 514757 chr11 135086622 + 105725600 105732031 L1PA7 6471 + 3 6465 2528 191 6 7 210 0 1 59 0 3 511 9 19 658 0 1 121 0 1 28 6 12 26 0 1 142 0 2 524 0 2 114 1 3 179 1 21 270 6 8 219 1 0 270 0 1 217 7 6 110 4 0 350 40 19 333 0 1 104 0 1 102 0 1 529 10 11 230 1 0 18 0 1 63 1 2 434 1 0 190 0 1 135 chain 9656 chr11 135086622 + 105779539 105779646 L1PA2 6032 + 5924 6030 71148 88 1 0 18 chain 5912 chr11 135086622 + 105824633 105824702 U4 144 + 0 69 81431 69 chain 74099 chr11 135086622 + 106002698 106003791 MER11B 1079 + 0 1079 23067 51 0 3 403 18 17 22 24 12 15 0 1 70 0 1 125 1 0 14 75 69 22 0 1 53 0 1 169 2 1 29 chain 13265 chr11 135086622 + 106027159 106027376 THE1B 368 + 144 368 64685 28 2 1 28 34 42 125 chain 8640 chr11 135086622 + 106032091 106032478 MLT1D 503 + 60 503 73375 21 186 195 16 66 113 98 chain 4324 chr11 135086622 + 106041415 106041517 MER3 215 + 53 157 89324 44 38 40 20 chain 21416 chr11 135086622 + 106081779 106082015 L1PA3long 6157 + 5918 6155 54619 82 0 1 154 chain 213251 chr11 135086622 + 106114831 106117525 HERVL-int 5654 + 2964 5654 9230 304 3 0 414 0 1 349 0 3 268 13 0 275 2 6 28 0 6 345 0 2 211 1 0 112 1 0 17 8 0 7 0 8 86 0 2 21 4 0 99 1 0 4 0 1 121 chain 100305 chr11 135086622 + 106122983 106124086 L1PA4 6152 + 4250 5353 18264 1103 chain 26132 chr11 135086622 + 106141768 106142126 MER83B 357 + 9 346 47517 122 0 9 18 31 1 187 chain 22495 chr11 135086622 + 106146599 106146942 MER83B 357 + 0 316 53128 17 5 0 114 43 21 164 chain 5287 chr11 135086622 + 106153402 106153461 MER53 195 + 0 59 84255 59 chain 45345 chr11 135086622 + 106170651 106171203 MER41A 554 + 0 554 31398 378 0 1 64 0 1 110 chain 11727 chr11 135086622 + 106177699 106177908 MER4A1 472 + 86 323 67356 18 1 11 79 41 59 70 chain 90638 chr11 135086622 + 106181622 106182765 L1P2 5180 + 1590 2743 19565 295 0 1 433 6 0 62 0 2 42 5 8 104 1 4 34 2 9 159 chain 116176 chr11 135086622 + 106188771 106190656 MER57-int 2662 + 760 2659 16194 110 0 8 225 1 5 33 0 3 130 20 21 4 1 0 10 0 3 28 34 39 20 1 0 60 2 0 22 3 5 111 4 20 98 7 5 6 0 2 181 12 9 29 3 2 131 0 3 65 0 1 100 0 1 21 0 6 23 0 1 26 7 6 42 19 24 14 5 0 9 2 1 10 8 3 68 127 105 15 4 1 34 chain 59414 chr11 135086622 + 106250761 106251517 LTR17 781 + 0 781 26529 9 0 1 316 2 1 117 8 11 261 0 22 43 chain 35338 chr11 135086622 + 106266351 106268072 THE1B-int 1605 + 13 1587 37810 48 0 2 135 12 11 223 8 35 31 15 18 28 1179 1001 42 chain 55341 chr11 135086622 + 106536019 106536783 L1PA8 5853 + 5100 5853 27764 430 0 1 33 1 0 61 7 0 53 23 21 4 0 1 4 1 0 31 3 2 19 2 1 92 chain 6025 chr11 135086622 + 106562453 106562536 MLT1A1 405 + 271 356 80987 14 3 5 66 chain 26303 chr11 135086622 + 106637424 106637785 MLT2A2 560 + 0 473 47265 181 2 0 114 0 98 13 9 20 32 0 5 10 chain 16635 chr11 135086622 + 106668758 106668984 L1PB4 2604 + 2139 2374 60231 171 5 14 50 chain 30596 chr11 135086622 + 106777465 106777840 L1PA7 6471 + 6095 6466 41468 252 0 1 69 1 0 41 4 0 8 chain 3544 chr11 135086622 + 106778121 106778160 MADE1 96 + 57 96 94914 39 chain 41039 chr11 135086622 + 106791874 106792754 L1PREC2 3366 + 1644 2209 33941 50 0 3 79 9 5 82 324 11 120 1 0 215 chain 312821 chr11 135086622 + 106797352 106800898 L1PA5 6144 + 2551 6144 6554 193 0 14 294 0 1 175 4 3 48 0 4 910 0 2 159 1 18 307 1 7 605 5 9 844 chain 39179 chr11 135086622 + 106807594 106808146 MLT2A2 560 + 0 560 35227 180 1 0 12 24 23 110 1 0 5 7 8 43 1 0 21 0 11 147 chain 55019 chr11 135086622 + 106829591 106830355 HERVL-int 5654 + 4899 5654 27871 65 15 7 25 1 0 124 5 0 96 1 0 8 6 7 192 10 11 50 6 7 87 0 3 73 chain 62867 chr11 135086622 + 106839304 106840005 L1PA5 6144 + 5429 6130 25661 701 chain 3850 chr11 135086622 + 106843999 106844044 L1P5 443 + 319 364 92500 45 chain 28735 chr11 135086622 + 106865431 106865804 L1PA7 6471 + 6091 6464 43734 207 24 24 142 chain 150133 chr11 135086622 + 106868292 106869994 L1PA5 6144 + 4168 5872 12339 716 1 0 430 0 1 164 1 2 37 0 1 353 chain 29709 chr11 135086622 + 106883830 106884192 L1PA5 6144 + 5774 6144 42361 179 2 3 32 0 7 149 chain 4015 chr11 135086622 + 106905631 106905741 MER65D 500 + 0 112 91345 4 0 1 28 48 49 30 chain 95332 chr11 135086622 + 106905918 106907077 L1PA7 6471 + 5285 6452 18863 335 1 4 265 10 14 233 0 1 315 chain 31958 chr11 135086622 + 107031811 107032299 L1PA16 3655 + 3110 3590 40372 94 1 0 70 1 0 16 2 0 61 29 28 6 0 2 28 8 9 21 1 0 133 3 0 6 2 0 6 chain 103616 chr11 135086622 + 107050871 107052292 THE1B-int 1605 + 0 1593 17861 432 24 49 213 28 34 99 11 12 291 0 140 75 1 2 102 4 7 88 4 0 49 chain 12212 chr11 135086622 + 107054697 107054847 L1PBa 3878 + 1263 1414 66457 137 0 1 13 chain 25645 chr11 135086622 + 107059392 107059799 L1PB4 2604 + 2121 2539 48251 38 9 11 29 18 19 62 9 8 7 0 12 79 2 0 22 1 0 131 chain 60262 chr11 135086622 + 107075944 107076693 MER4E 760 + 24 760 26305 140 2 0 100 1 0 4 0 1 18 1 0 246 10 1 194 1 0 32 chain 52929 chr11 135086622 + 107089353 107089949 L1PA4 6152 + 5554 6152 28600 447 4 3 132 0 3 13 chain 398437 chr11 135086622 + 107092991 107099869 L1PB1 5432 + 62 5419 5177 70 2 1 509 20 4 105 0 4 321 18 2 79 0 3 183 8 7 51 45 16 238 321 0 26 0 1 78 0 1 50 0 1 66 0 1 345 2 0 43 0 3 5 12 9 558 1 0 84 1 3 803 6 0 83 7 11 191 0 9 7 14 5 69 1 0 5 1095 0 203 0 1 135 0 4 175 3 0 124 7 10 41 2 10 285 43 14 24 1 0 9 1 0 5 10 6 9 2 0 53 2 1 15 1 0 44 1 0 16 14 1 11 1 0 17 26 21 24 1 0 21 2 1 12 1 0 15 chain 87651 chr11 135086622 + 107097425 107098481 L1PA7 6471 + 5389 6470 20107 93 0 1 139 0 5 88 0 10 246 0 1 50 7 14 95 0 1 338 chain 4178 chr11 135086622 + 107109430 107109519 L1PB3 3668 + 3482 3566 90271 13 2 0 8 2 1 26 10 8 28 chain 17322 chr11 135086622 + 107124146 107124385 L1M1 2793 + 2450 2685 59430 25 0 2 71 4 0 80 1 0 45 1 0 12 chain 16362 chr11 135086622 + 107135275 107135478 MER107 203 + 5 202 60557 161 5 0 13 1 0 23 chain 3080 chr11 135086622 + 107156833 107156867 MER65A 464 + 0 34 98984 34 chain 135404 chr11 135086622 + 107194594 107196102 L1PA5 6144 + 4628 6136 13499 1508 chain 34798 chr11 135086622 + 107219518 107219987 MER4A1 472 + 0 472 38164 235 17 18 142 10 12 65 chain 28416 chr11 135086622 + 107238420 107238783 THE1B 368 + 0 368 44239 40 0 15 120 1 0 112 12 3 78 chain 35203 chr11 135086622 + 107253665 107254129 LTR2 463 + 0 463 37893 61 0 3 316 17 18 13 1 0 17 3 0 11 1 0 24 chain 465147 chr11 135086622 + 107293729 107299575 L1PA5 6144 + 4 5874 3988 103 13 27 75 3 2 276 0 1 26 10 11 7 0 2 48 1 0 17 2 3 46 1 8 7 7 0 210 0 11 30 0 17 23 33 9 144 5 4 54 13 4 21 10 9 351 1 0 28 1 2 592 0 2 20 0 2 1410 0 1 98 0 1 467 1 0 171 0 6 74 0 1 869 14 16 564 chain 24146 chr11 135086622 + 107325375 107325705 L1PA7 6471 + 6161 6465 50579 45 29 5 104 1 0 9 0 1 134 2 0 6 chain 2807 chr11 135086622 + 107337795 107337841 MER115 684 + 567 615 101616 11 2 4 33 chain 550958 chr11 135086622 + 107361810 107367839 L1PA2 6032 + 0 6029 679 398 0 1 37 1 0 305 0 1 851 0 1 4424 3 1 10 chain 544169 chr11 135086622 + 107372762 107378776 L1PA3long 6157 + 2 6156 1075 150 0 1 102 0 1 142 0 1 380 1 129 49 0 1 2303 0 8 2887 chain 39534 chr11 135086622 + 107390750 107391278 MLT2A2 560 + 0 560 34993 172 21 37 82 0 1 4 1 0 103 3 14 37 0 1 99 0 4 6 chain 27091 chr11 135086622 + 107395045 107395412 THE1B 368 + 0 368 46136 12 6 4 24 0 5 127 15 14 107 1 0 75 chain 398851 chr11 135086622 + 107397797 107403230 L1PB1 5432 + 79 5409 5171 54 0 3 172 12 1 154 3 0 788 6 2 23 35 17 33 8 12 52 1 0 5 1 0 6 3 0 5 15 12 56 4 0 345 0 7 419 1 0 110 0 1 135 0 1 4 10 5 76 0 5 23 21 21 216 1 0 796 1 0 94 13 0 224 1 0 23 6 7 34 0 1 386 0 1 4 1 0 61 0 1 155 7 6 468 35 11 24 1 0 9 16 11 11 3 1 50 22 20 13 2 0 28 1 0 15 3 0 3 9 0 28 8 5 14 3 1 13 0 1 9 1 0 21 1 0 13 1 0 5 chain 4068 chr11 135086622 + 107412907 107412959 L1MC1 2226 + 1993 2047 90955 33 0 2 19 chain 58294 chr11 135086622 + 107475137 107475889 MER4E 760 + 0 760 26866 24 3 0 127 24 27 184 2 0 7 0 3 74 1 0 181 0 5 90 4 7 31 chain 31886 chr11 135086622 + 107481244 107481592 L1PA3long 6157 + 5809 6157 40429 348 chain 49960 chr11 135086622 + 107497422 107498081 LTR12_ 688 + 0 688 29582 55 0 41 42 24 8 21 2 1 110 5 10 400 chain 56780 chr11 135086622 + 107512831 107513761 L1PA15 4387 + 3444 4366 27331 77 0 11 5 3 0 276 2 0 20 5 1 47 0 3 6 2 0 23 0 1 18 1 0 78 5 6 54 1 7 27 2 1 26 1 0 53 2 1 22 4 0 8 25 24 17 29 27 11 0 4 18 3 1 12 5 0 14 5 1 12 1 0 10 chain 41368 chr11 135086622 + 107518406 107518944 MER9a2 513 + 0 513 33750 252 11 12 41 32 0 76 0 4 59 0 2 67 chain 4036 chr11 135086622 + 107529240 107529288 MIR 256 + 176 224 91174 48 chain 34776 chr11 135086622 + 107566034 107566523 MER4A1 472 + 0 472 38176 72 0 1 33 14 1 88 16 11 221 0 1 4 1 0 40 chain 3761 chr11 135086622 + 107583539 107583586 MIR 256 + 182 231 93131 7 0 2 40 chain 4646 chr11 135086622 + 107593639 107593697 MER53 195 + 8 66 87547 58 chain 16938 chr11 135086622 + 107632897 107633190 Tigger4b 360 + 0 360 59870 40 69 120 131 0 16 53 chain 10022 chr11 135086622 + 107684772 107684977 L1PA16 3655 + 3427 3619 70371 104 13 22 25 3 0 8 36 17 16 chain 19401 chr11 135086622 + 107745174 107745479 L1MA2 4263 + 3754 4052 57128 38 17 14 12 6 5 135 9 7 82 1 0 5 chain 397418 chr11 135086622 + 107759268 107766028 L1PB1 5432 + 19 5410 5189 146 7 11 62 8 14 152 1 0 141 0 12 9 12 0 14 7 11 31 1 0 4 3 4 131 0 2 170 1044 0 123 0 1 74 0 1 115 0 4 13 16 13 5 1 0 15 0 1 97 1 0 6 33 0 123 12 17 167 0 2 6 311 0 139 1 4 53 0 2 289 0 1 101 2 0 94 0 1 57 0 3 28 4 0 98 0 3 253 4 1 296 7 6 177 1 0 404 4 7 375 1 0 442 2 0 55 0 4 18 3 0 177 4 11 41 2 0 245 0 14 23 1 0 9 1 0 10 4 0 10 2 0 50 44 42 22 1 0 20 19 7 19 8 5 14 2 0 24 1 0 22 0 3 9 1 0 6 chain 8758 chr11 135086622 + 107786765 107786876 MER21-int 1364 + 1137 1250 73086 94 0 2 17 chain 11614 chr11 135086622 + 107796169 107796380 L1MA4A 3247 + 2981 3179 67544 18 12 7 20 0 1 80 1 0 9 4 2 15 21 15 31 chain 4811 chr11 135086622 + 107847969 107848028 L1MB3 1562 + 1354 1413 86641 59 chain 5242 chr11 135086622 + 107862802 107862864 MLT1D 503 + 399 461 84489 62 chain 25280 chr11 135086622 + 107878984 107879367 LTR7B 505 + 0 505 48814 108 0 10 18 4 6 29 18 86 28 42 84 136 chain 141822 chr11 135086622 + 107911835 107913482 SVA_F 1814 + 13 1814 12955 136 11 0 432 0 1 101 0 37 167 0 1 12 1 0 34 1 66 125 1 51 612 0 12 14 chain 6894 chr11 135086622 + 107922452 107922533 MLT1C 463 + 0 81 77972 81 chain 25860 chr11 135086622 + 107934644 107934951 AluSq10 312 + 0 305 47925 97 1 0 14 2 1 193 chain 33536 chr11 135086622 + 107977837 107978293 MLT2A1 477 + 0 477 39053 140 0 1 24 5 9 209 8 0 12 13 37 45 chain 465363 chr11 135086622 + 107978293 107986260 HERVL-int 5654 + 0 5654 3978 60 0 1 5 3 0 169 0 16 30 0 1 665 3 4 1039 1 2 176 0 1 328 1 6 128 0 1 143 2074 0 296 0 6 215 0 14 227 0 13 382 2 1 94 1 0 991 15 6 25 0 1 172 2 0 8 0 1 126 291 0 79 1 2 17 0 2 125 0 3 73 chain 3309 chr11 135086622 + 108010243 108010282 MADE1 96 + 57 96 96929 39 chain 4978 chr11 135086622 + 108018876 108018938 MIR 256 + 59 121 85759 62 chain 14213 chr11 135086622 + 108083881 108084100 MER30 238 + 0 238 63308 16 2 8 45 7 5 32 5 0 8 1 21 103 chain 8505 chr11 135086622 + 108084912 108085013 HY3 101 + 0 101 73666 101 chain 5273 chr11 135086622 + 108114949 108115174 MLT1A0 366 + 65 305 84326 17 131 144 15 5 7 57 chain 107820 chr11 135086622 + 108200269 108201859 MER52-int 3354 + 1699 3289 17349 231 4 0 232 4 3 4 0 1 254 1 0 14 0 24 69 1 3 217 0 9 19 2 1 52 1 0 7 1 0 40 3 1 15 1 0 36 2 0 11 1 0 42 2 0 33 1 0 31 2 0 9 2 0 6 19 16 29 2 1 10 2 0 33 35 30 6 2 0 28 4 7 7 1 0 15 1 0 32 1 0 6 1 0 6 chain 3274 chr11 135086622 + 108242455 108242528 L1MD 993 + 61 134 97233 27 24 24 22 chain 548339 chr11 135086622 + 108260626 108266643 L1PA2 6032 + 0 6027 843 256 1 0 25 0 3 283 0 4 135 0 1 1717 1 0 587 0 5 2701 1 0 310 chain 13815 chr11 135086622 + 108341985 108342206 MER30 238 + 4 238 63854 14 24 22 48 0 2 18 4 14 68 0 3 45 chain 552775 chr11 135086622 + 108356931 108362967 L1PA2 6032 + 0 6032 562 213 0 1 42 1 0 2882 0 1 2873 1 0 7 2 0 8 2 0 5 chain 550172 chr11 135086622 + 108373544 108379636 L1PA3long 6157 + 8 6157 734 538 0 39 160 0 1 211 0 1 834 1 3 905 0 5 184 6 8 365 0 1 4 1 0 1403 0 1 639 0 4 135 0 1 445 0 1 261 chain 39617 chr11 135086622 + 108401297 108401779 LTR15 485 + 0 477 34948 17 11 6 214 0 1 192 1 0 47 chain 19223 chr11 135086622 + 108417679 108417926 L1PA7 6471 + 6225 6466 57322 19 0 1 17 4 0 194 3 0 10 chain 408534 chr11 135086622 + 108423092 108428819 L1PA7 6471 + 305 6469 5038 95 0 4 257 0 174 378 0 4 271 0 3 41 0 1 347 0 896 258 0 1 26 0 1 32 4 8 78 7 8 290 1 0 6 12 12 53 0 4 21 0 5 196 0 1 1209 7 6 171 5 15 9 47 0 91 2 0 214 0 1 133 0 3 86 698 73 96 1 0 411 21 20 142 0 2 11 chain 27406 chr11 135086622 + 108427439 108427745 AluYg6 310 + 0 304 45695 12 0 2 104 4 0 186 chain 19489 chr11 135086622 + 108429549 108430077 L1MB3 1562 + 996 1498 57044 139 9 11 52 22 21 41 1 0 13 194 169 26 6 5 25 chain 298170 chr11 135086622 + 108440858 108444618 L1P2 5180 + 2 3794 6883 148 2 1 96 3 2 240 12 11 7 1 0 8 1 0 272 9 7 97 9 13 29 0 25 500 1 2 579 0 7 274 7 0 45 0 1 326 47 53 703 0 3 71 1 0 272 chain 522241 chr11 135086622 + 108444619 108450609 L1PA4 6152 + 2 5976 2170 196 1 0 4 1 2 75 1 0 297 1 0 258 17 0 410 1 0 153 9 0 1294 2 1 564 0 1 827 0 1 580 1 0 640 0 4 355 0 9 303 chain 205857 chr11 135086622 + 108450791 108453157 L1PA5 6144 + 3766 6144 9508 6 1 0 355 0 1 259 0 2 581 0 1 323 1 0 35 1 8 356 5 5 390 0 1 15 0 2 38 chain 5703 chr11 135086622 + 108469456 108469550 MADE1 96 - 0 96 82322 38 18 20 38 chain 36472 chr11 135086622 + 108486780 108487379 MER4B 649 + 0 577 37092 27 14 13 56 0 1 5 21 21 67 9 16 40 8 12 63 1 0 44 5 0 55 3 0 5 23 0 139 2 1 12 chain 3901 chr11 135086622 + 108487518 108487570 MER4E1 777 + 716 770 92114 36 0 2 16 chain 40329 chr11 135086622 + 108518648 108519177 MER41A 554 + 0 534 34428 213 14 12 47 0 1 82 4 1 52 0 4 57 0 5 60 chain 19908 chr11 135086622 + 108555566 108555937 THE1C 375 + 0 368 56517 30 1 0 17 10 7 14 30 30 15 5 6 57 14 15 56 9 8 88 0 1 4 1 0 20 chain 4909 chr11 135086622 + 108626131 108626191 MER20 218 + 118 178 86114 60 chain 4338 chr11 135086622 + 108627656 108627715 HAL1 992 + 155 212 89241 20 2 0 37 chain 23490 chr11 135086622 + 108641752 108642047 MER4D1 891 + 0 295 51605 27 1 0 262 0 1 5 chain 13712 chr11 135086622 + 108772639 108772829 MER1B 344 + 32 218 64002 50 5 0 117 3 4 15 chain 109603 chr11 135086622 + 108777653 108778893 L1PA5 6144 + 4091 5340 17113 505 0 1 678 0 4 13 2 6 42 chain 18652 chr11 135086622 + 108860985 108861231 MLT2A1 477 + 12 263 57942 102 1 0 5 0 1 20 10 11 18 0 4 90 chain 7176 chr11 135086622 + 108952586 108953057 L1MC3 1789 + 1177 1575 77024 50 134 107 29 0 4 10 1 0 9 210 161 28 chain 75862 chr11 135086622 + 108954866 108955859 L1PA8 5853 + 4869 5853 22624 140 8 0 73 0 2 20 0 1 368 0 1 4 1 0 42 3 4 40 1 0 44 2 0 35 0 2 28 22 20 46 3 2 19 1 0 93 chain 21097 chr11 135086622 + 108981685 108982044 THE1B 368 + 0 368 55011 81 0 1 26 8 9 60 59 66 63 1 0 4 1 2 56 chain 41153 chr11 135086622 + 109005636 109006165 L1PA11 4918 + 3826 4357 33874 358 3 6 141 1 0 26 chain 6217 chr11 135086622 + 109047804 109047969 L1PB1 5432 + 5258 5413 80284 23 1 0 4 5 12 14 8 0 14 30 25 20 1 0 21 1 0 9 0 1 5 2 0 7 chain 29845 chr11 135086622 + 109050851 109051227 L1PA7 6471 + 6082 6457 42190 239 2 1 135 chain 31958 chr11 135086622 + 109136055 109136729 MLT2A1 477 + 3 477 40373 166 1 5 202 2 0 9 20 0 8 216 35 6 5 0 31 0 4 8 chain 55620 chr11 135086622 + 109145444 109146066 SVA_B 1603 + 978 1597 27686 24 2 0 7 1 0 588 chain 63993 chr11 135086622 + 109287431 109288308 HERVL-int 5654 + 4760 5654 25410 68 12 4 54 7 9 114 2 1 104 0 5 99 1 0 94 0 8 84 0 1 13 0 8 7 1 0 150 6 10 61 chain 53198 chr11 135086622 + 109314323 109314958 L1P1 4361 + 3709 4341 28500 442 1 0 154 1 0 23 2 1 12 chain 3442 chr11 135086622 + 109354425 109354468 MER63A 208 + 85 128 95719 43 chain 24889 chr11 135086622 + 109394276 109394629 THE1A 353 + 2 353 49457 11 2 0 34 0 1 48 1 0 15 0 2 6 20 18 216 chain 310230 chr11 135086622 + 109401918 109405316 L1PA2 6032 + 2629 6031 6610 489 0 1 1911 0 1 769 0 2 229 chain 77443 chr11 135086622 + 109444696 109445608 L1PA6 6164 + 5189 6108 22207 140 0 1 680 0 1 39 6 11 47 chain 380450 chr11 135086622 + 109446515 109450775 L1PA4 6152 + 1894 6152 5473 1141 0 1 168 1 2 2877 4 0 69 chain 154719 chr11 135086622 + 109460803 109462698 L1PA7 6471 + 4579 6461 12070 406 8 1 210 1 0 208 0 7 12 14 0 198 1 0 4 0 3 833 chain 308999 chr11 135086622 + 109467059 109471142 L1PA7 6471 + 2568 6469 6639 65 3 0 309 0 1 161 3 1 110 9 5 13 0 4 6 4 0 31 5 6 120 222 0 97 1 0 52 0 4 93 2 0 359 1 0 110 1 0 97 29 64 211 1 2 85 1 0 4 0 1 73 0 1 944 5 6 20 3 0 25 0 1 18 0 1 13 17 19 44 0 12 375 0 1 71 0 1 214 9 0 8 0 9 26 5 0 8 chain 15985 chr11 135086622 + 109511084 109511387 THE1C 375 + 1 336 61041 39 69 104 35 0 2 5 17 12 138 chain 53949 chr11 135086622 + 109524316 109524943 L1PA3long 6157 + 5513 6140 28248 627 chain 31281 chr11 135086622 + 109525146 109525517 L1PA6 6164 + 5782 6150 40912 60 3 0 308 chain 49908 chr11 135086622 + 109528034 109528876 L1PB1 5432 + 4610 5404 29600 18 0 1 8 0 1 171 0 4 39 0 1 161 0 2 63 53 35 21 1 0 11 1 0 4 8 9 9 2 0 52 2 1 15 1 0 43 2 1 16 2 0 6 15 6 16 42 22 24 1 0 21 1 0 13 chain 19319 chr11 135086622 + 109535996 109536218 L1PA5 6144 + 5922 6144 57220 222 chain 317992 chr11 135086622 + 109540689 109544301 L1PA5 6144 + 2504 6127 6445 712 0 4 449 0 3 275 1 3 1337 1 0 113 0 3 724 chain 3399 chr11 135086622 + 109545028 109545069 LTR8 732 + 651 692 96068 41 chain 3802 chr11 135086622 + 109556721 109556761 L1PA5 6144 + 5834 5874 92832 40 chain 22221 chr11 135086622 + 109556761 109557020 L1PA5 6144 + 5876 6135 53521 259 chain 22298 chr11 135086622 + 109570110 109571367 L1PB1 5432 + 3374 4625 13235 357 6 1 251 0 1 8 1 0 318 1 0 163 0 5 7 14 9 131 chain 516245 chr11 135086622 + 109571381 109577059 L1PA2 6032 + 0 6029 2458 317 0 1 134 0 341 2070 5 6 2311 0 8 841 chain 14475 chr11 135086622 + 109577092 109577908 L1PB1 5432 + 4625 5413 13235 55 9 12 16 1 0 395 1 2 9 3 0 11 0 3 10 1 0 9 16 11 9 2 0 53 2 1 16 1 0 44 1 0 15 1 0 4 22 11 11 13 10 14 2 0 24 1 0 21 1 0 13 1 0 9 chain 20287 chr11 135086622 + 109598428 109598670 L1PA2 6032 + 5771 6014 56030 106 5 6 131 chain 52537 chr11 135086622 + 109622081 109622680 L1PA4 6152 + 4745 5349 28716 533 0 4 18 0 1 48 chain 26120 chr11 135086622 + 109625866 109626219 L1PA8 5853 + 5508 5853 47537 54 1 0 46 2 0 74 1 0 11 10 8 42 1 0 17 1 0 93 chain 70841 chr11 135086622 + 109711811 109712629 L1PA6 6164 + 5338 6156 23795 551 0 1 247 1 0 19 chain 15393 chr11 135086622 + 109720865 109721036 L1PA2 6032 + 5745 5916 61794 171 chain 15533 chr11 135086622 + 109735959 109736176 L1PA8 5853 + 5640 5853 61609 38 12 10 51 3 2 19 1 0 93 chain 94411 chr11 135086622 + 109758923 109760100 L1PA7 6471 + 5276 6461 18979 116 0 2 227 0 3 47 0 3 21 9 8 604 13 14 140 chain 20333 chr11 135086622 + 109761212 109761452 L1PA7 6471 + 6070 6310 55968 240 chain 13416 chr11 135086622 + 109770966 109771246 L1PB1 5432 + 5167 5428 64444 53 2 1 8 1 0 7 1 0 44 1 0 16 4 0 6 7 6 19 24 19 24 1 0 21 1 0 8 6 5 18 2 0 6 chain 12292 chr11 135086622 + 109790947 109793705 L1MB3 1562 + 1091 1347 66298 110 1 0 20 2546 33 23 0 12 58 chain 32986 chr11 135086622 + 109952242 109952692 MER4A 717 + 0 448 39525 127 0 1 193 28 25 102 chain 43528 chr11 135086622 + 109961537 109962086 MLT2A2 560 + 0 560 32435 406 0 11 143 chain 438991 chr11 135086622 + 109962086 109967674 HERVL-int 5654 + 0 5654 4590 608 4 13 1074 0 2 407 6 9 229 6 0 547 21 10 214 9 18 883 0 16 242 1 6 762 0 38 27 7 11 108 3 0 5 3 6 43 0 3 78 0 1 69 4 0 151 2 0 3 1 0 71 chain 8816 chr11 135086622 + 110045482 110045761 L1MC1 2226 + 1783 2047 72959 55 153 140 16 2 0 53 chain 12605 chr11 135086622 + 110147396 110147617 L1PA8 5853 + 5637 5853 65790 45 1 0 11 9 8 36 5 4 11 9 8 62 6 5 26 chain 12057 chr11 135086622 + 110188373 110188630 L1PB1 5432 + 5170 5404 66743 50 2 1 15 1 0 45 1 0 11 28 16 18 3 1 5 2 0 14 2 0 11 14 13 22 1 0 12 chain 106248 chr11 135086622 + 110191876 110193368 L1PA16 3655 + 2083 3588 17536 571 7 28 216 1 0 24 1 0 38 0 2 6 5 6 80 75 72 78 1 0 88 2 0 286 3 0 10 chain 26100 chr11 135086622 + 110202738 110203225 L1MA2 4263 + 3620 4114 47574 5 2 0 17 6 7 13 1 0 50 1 0 34 2 0 48 21 18 35 0 25 44 4 0 8 39 41 82 18 11 47 1 0 9 chain 5142 chr11 135086622 + 110207337 110207399 MER5A 189 + 125 189 84950 47 0 2 15 chain 552957 chr11 135086622 + 110208986 110215001 L1PA2 6032 + 12 6029 545 245 1 0 293 0 1 767 1 0 618 2 0 226 0 4 98 0 4 1923 3 0 1838 chain 37600 chr11 135086622 + 110299196 110299716 MER41B 635 + 2 522 36336 126 0 1 83 3 0 5 0 3 223 24 23 56 chain 29674 chr11 135086622 + 110303684 110304200 MER1A 529 + 0 511 42401 17 30 49 104 4 5 238 86 61 37 chain 4998 chr11 135086622 + 110307624 110307745 MLT1F1 559 + 0 122 85676 45 47 48 29 chain 25229 chr11 135086622 + 110343858 110344212 THE1B 368 + 0 368 48901 44 0 15 23 4 5 79 7 6 134 7 6 56 chain 43250 chr11 135086622 + 110379117 110379692 LTR71B 605 + 0 605 32612 109 18 42 34 0 5 386 1 2 27 chain 45737 chr11 135086622 + 110396218 110396731 MER9a1 513 + 0 513 31192 513 chain 141248 chr11 135086622 + 110398064 110399788 HERVK9-int 4720 + 54 2698 13006 4 1 0 66 1 0 4 5 4 30 1 0 702 0 1 5 6 5 621 0 924 278 chain 11570 chr11 135086622 + 110399818 110399953 LTR12_ 688 + 553 688 67625 135 chain 413489 chr11 135086622 + 110399974 110404847 HERV9-int 5642 + 0 4890 4980 586 20 34 171 1 0 316 3 0 144 2 0 220 0 1 294 0 1 1257 1 0 779 1 2 168 0 1 35 0 1 509 0 5 285 1 0 4 0 1 76 chain 55186 chr11 135086622 + 110406480 110407144 LTR12_ 688 + 0 688 27814 121 0 25 21 2 1 520 chain 21878 chr11 135086622 + 110416633 110417246 LTR12 884 + 0 402 54004 65 1 42 125 316 0 45 0 66 33 2 0 26 chain 48509 chr11 135086622 + 110427065 110427689 PRIMA4_LTR 623 + 0 623 30117 332 1 0 50 3 1 9 0 1 44 11 12 174 chain 122618 chr11 135086622 + 110441245 110442805 THE1B-int 1605 + 0 1600 15093 15 0 2 27 1 2 244 3 4 138 7 35 5 2 0 460 1 0 23 2 3 572 0 10 60 chain 79985 chr11 135086622 + 110517642 110518699 MER11C 1089 + 0 1073 21628 246 0 9 62 4 8 43 1 0 17 1 0 147 52 51 86 0 1 20 0 4 5 1 0 38 0 1 127 0 1 54 1 0 144 0 1 8 chain 4274 chr11 135086622 + 110533199 110533256 MER8 282 + 186 241 89665 50 2 0 5 chain 329612 chr11 135086622 + 110553974 110597292 L1PA4 6152 + 130 6151 6222 450 1 0 253 17 0 1172 38786 1497 180 4 0 438 0 1 1176 1 5 595 1 2 109 0 1 118 0 7 17 chain 18507 chr11 135086622 + 110624376 110624624 L1PA8A 6298 + 6044 6290 58094 71 9 7 168 chain 135839 chr11 135086622 + 110650949 110652806 L1PA10 4194 + 2141 4006 13454 85 0 4 129 0 1 130 0 11 62 0 1 60 11 12 20 20 19 23 3 0 7 0 3 255 13 1 401 25 27 117 27 25 12 0 2 101 14 16 13 0 1 7 7 6 48 1 0 266 chain 37556 chr11 135086622 + 110659655 110660067 L1PA2 6032 + 5620 6032 36365 412 chain 6836 chr11 135086622 + 110668686 110668838 Tigger1 2417 + 2260 2417 78181 11 1 0 66 50 56 24 chain 83563 chr11 135086622 + 110702095 110703020 L1PA3long 6157 + 3704 4632 20898 589 0 2 285 0 1 51 chain 91489 chr11 135086622 + 110769665 110770861 L1PA11 4918 + 3298 4499 19423 21 0 1 146 9 10 413 1 2 16 1 4 54 2 0 43 0 1 301 0 4 17 1 0 34 0 3 27 1 0 12 2 0 68 2 0 10 4 3 11 chain 16758 chr11 135086622 + 110846846 110847036 L1PA7 6471 + 5770 5960 60084 190 chain 10193 chr11 135086622 + 110859941 110860056 L1PA5 6144 + 6029 6144 70025 115 chain 34032 chr11 135086622 + 110925968 110926411 MLT2A1 477 + 0 477 38685 169 4 1 217 0 33 47 0 4 6 chain 6190 chr11 135086622 + 110962688 110962781 MER34A1 583 + 444 535 80389 69 8 6 16 chain 22089 chr11 135086622 + 111028693 111028927 AluYb8 318 + 70 304 53715 234 chain 195875 chr11 135086622 + 111052097 111054439 HERVH-int 3825 + 1478 3825 9848 100 5 0 201 0 1 10 1 2 208 0 4 82 10 15 562 0 1 4 5 4 216 1 0 548 0 3 9 3 0 377 chain 30361 chr11 135086622 + 111055698 111056095 LTR7 482 + 1 468 41704 68 8 46 109 0 1 8 0 31 204 chain 44862 chr11 135086622 + 111122676 111123362 MER4D0 881 + 185 881 31658 147 30 31 51 2 1 46 19 28 29 8 9 14 14 12 29 0 1 153 0 1 144 chain 45464 chr11 135086622 + 111180867 111181507 LTR66 600 + 0 581 31329 396 77 7 8 1 0 46 0 16 80 4 0 28 chain 130289 chr11 135086622 + 111213699 111216195 L1M1 2793 + 527 2674 14001 7 1 0 6 1 0 14 2 0 8 3 0 8 1 0 8 151 85 39 44 31 7 2 0 6 2 0 18 5 2 9 3 1 26 1 0 28 5 3 6 1 0 54 15 12 98 1 0 87 0 1 53 11 18 14 5 4 68 2 0 21 4 0 6 3 0 98 303 0 374 10 34 273 19 26 24 0 3 125 0 4 27 30 31 35 1 13 92 1 0 61 0 2 19 2 1 5 0 1 39 1 10 56 1 0 46 chain 5546 chr11 135086622 + 111216700 111216771 L1M1 2793 - 119 189 83049 46 1 0 24 chain 123943 chr11 135086622 + 111221796 111223216 LTR12C 1709 + 1 1701 14858 435 0 1 27 0 1 185 0 278 184 1 0 4 4 2 106 0 4 312 1 0 161 chain 95170 chr11 135086622 + 111292299 111293379 L1PA5 6144 + 5066 6144 18884 228 4 1 350 0 1 498 chain 303040 chr11 135086622 + 111312982 111317452 L1PB1 5432 + 1229 5420 6763 175 1 6 20 9 10 179 0 1 90 3 0 157 1 3 86 0 1 128 467 0 292 1 5 118 1 0 42 1 5 294 2 1 313 1 0 55 0 1 626 0 2 50 0 1 102 1 0 176 0 4 232 2 255 153 0 1 27 1 0 4 0 1 167 6 5 86 69 15 20 1 0 8 1 0 11 5 1 11 2 0 50 3 2 15 1 0 37 8 7 16 1 0 6 16 6 19 2 0 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 16 chain 43335 chr11 135086622 + 111319774 111320532 MER41A 554 + 0 546 32542 86 6 7 90 217 0 24 0 9 219 5 0 111 chain 4055 chr11 135086622 + 111383101 111383148 U2 167 + 6 53 91043 47 chain 23949 chr11 135086622 + 111403978 111404322 THE1B 368 + 0 368 50867 44 8 23 11 1 0 93 1 0 29 2 0 14 0 4 6 11 19 67 0 1 57 chain 107764 chr11 135086622 + 111433275 111434551 L1PA6 6164 + 4875 6159 17355 391 1 0 52 0 4 82 4 6 422 1 0 170 1 6 5 1 0 146 chain 3612 chr11 135086622 + 111465861 111465903 MER58D 378 + 322 364 94331 42 chain 3934 chr11 135086622 + 111521952 111521994 MER66B 489 + 295 337 91879 42 chain 22023 chr11 135086622 + 111564357 111564617 AluSc 308 + 22 282 53802 260 chain 11647 chr11 135086622 + 111564736 111564899 MER1B 344 + 42 216 67486 20 15 26 128 chain 8899 chr11 135086622 + 111567218 111567354 MER2 342 + 89 216 72787 8 2 0 10 9 2 107 chain 12420 chr11 135086622 + 111643273 111643467 L1PA8 5853 + 5657 5847 66106 22 1 0 8 9 8 45 2 1 19 1 0 87 chain 18886 chr11 135086622 + 111683123 111683350 7SK 245 + 13 240 57653 227 chain 28754 chr11 135086622 + 111746207 111746645 L1PA8 5853 + 5428 5853 43700 93 1 0 43 1 0 43 3 1 70 12 10 52 2 1 16 5 4 49 22 17 26 chain 19705 chr11 135086622 + 111804163 111805789 L1MC1 2226 + 1113 2181 56777 7 6 0 21 34 33 21 92 94 101 949 417 21 1 0 14 7 12 35 6 0 28 10 9 28 42 38 54 120 106 29 chain 17076 chr11 135086622 + 111827205 111827416 AluSp 311 + 11 222 59727 211 chain 34267 chr11 135086622 + 111880292 111880813 MER41A 554 + 0 554 38515 42 23 27 52 1 4 207 1 0 30 1 5 60 0 1 28 14 19 23 2 18 28 0 1 9 chain 34726 chr11 135086622 + 111893682 111894137 L1MA2 4263 + 2983 3445 38207 353 2 4 14 4 6 62 0 3 20 chain 2970 chr11 135086622 + 111903581 111903615 L1MB7 1623 + 1385 1419 100194 34 chain 5538 chr11 135086622 + 111928403 111928467 5S 121 + 4 68 83089 64 chain 15668 chr11 135086622 + 111956025 111956329 L1MB2 1706 + 1378 1672 61440 22 0 4 7 7 3 115 14 15 27 7 0 7 40 36 58 chain 23600 chr11 135086622 + 111969825 111971972 L1PA16 3655 + 1702 3589 51433 90 6 5 47 2 1 87 1708 1453 31 5 8 62 22 21 42 2 0 29 3 0 11 chain 17394 chr11 135086622 + 112000171 112000417 L1MB5 1630 + 613 858 59362 7 1 0 104 2 1 73 3 4 56 chain 508076 chr11 135086622 + 112005934 112011958 L1PA6 6164 + 120 6160 2843 130 1 0 11 1 0 16 1 0 5 4 5 12 0 1 487 14 0 5 0 17 377 0 3 892 1 0 132 0 2 7 0 1 62 0 1 48 23 11 54 0 4 179 0 4 13 0 3 174 0 1 403 1 2 391 2 1 122 1 0 580 0 3 89 0 4 254 0 1 84 1 2 602 1 0 301 0 1 387 5 6 6 1 0 144 chain 11650 chr11 135086622 + 112092094 112092252 L1PA8 5853 + 5696 5853 67478 4 0 1 37 6 5 17 1 0 93 chain 29382 chr11 135086622 + 112136635 112136952 AluYb8 318 + 0 315 42764 132 2 0 183 chain 5754 chr11 135086622 + 112136972 112137066 MER104 178 + 82 176 82114 22 16 16 56 chain 81004 chr11 135086622 + 112181924 112182843 L1PA5 6144 + 5205 6124 21438 89 1 0 70 0 3 604 3 1 152 chain 54061 chr11 135086622 + 112224413 112225030 L1PA6 6164 + 4698 5315 28205 617 chain 45571 chr11 135086622 + 112225032 112225548 L1PA6 6164 + 5315 5831 31278 516 chain 28574 chr11 135086622 + 112225549 112225872 L1PA6 6164 + 5833 6156 43993 323 chain 2470 chr11 135086622 + 112307080 112307117 MER45A 178 + 113 149 103808 18 2 1 17 chain 3275 chr11 135086622 + 112348597 112348635 MLT2B4 540 + 502 540 97232 38 chain 5559 chr11 135086622 + 112390479 112390568 MER5B 177 - 16 105 82996 30 1 0 5 7 9 15 1 0 30 chain 5091 chr11 135086622 + 112404562 112404627 LTR16A 446 + 314 379 85195 65 chain 185511 chr11 135086622 + 112426384 112428818 L1PA8 5853 + 50 5849 10321 22 2 0 10 1 0 6 59 20 197 0 4 158 5 3401 51 1 6 129 0 8 341 0 1 580 0 2 23 2 0 553 1 0 48 2 0 72 1 0 5 2 1 52 2 1 19 1 0 89 chain 4272 chr11 135086622 + 112435915 112436034 L1PB1 5432 + 5331 5427 89686 15 2 0 19 17 1 4 1 0 20 2 1 13 3 2 16 2 0 5 chain 132152 chr11 135086622 + 112672358 112674284 L1PREC2 3366 + 1128 3037 13814 119 9 9 53 10 13 262 0 1 26 0 2 44 3 12 93 3 0 9 4 7 367 0 1 7 0 2 228 13 14 181 0 9 122 0 1 5 7 0 37 2 0 16 5 7 31 1 0 44 1 0 4 3 0 13 52 39 16 2 0 29 4 1 11 30 16 26 7 5 27 chain 13526 chr11 135086622 + 112702994 112703189 THE1D 372 + 2 188 64280 54 18 9 123 chain 16036 chr11 135086622 + 112720571 112720793 MSTA-int 1630 + 1407 1630 60983 46 1 0 22 1 2 102 7 8 43 chain 16078 chr11 135086622 + 112904256 112904482 MER47A 366 + 140 366 60920 5 0 2 148 7 6 16 2 1 48 chain 27791 chr11 135086622 + 112955641 112956040 L1PB 1623 + 1127 1515 45193 22 14 15 140 2 0 142 1 0 6 4 3 29 1 0 4 3 0 13 5 1 13 chain 12119 chr11 135086622 + 113056075 113056386 L1MA4 2864 + 2515 2803 66634 108 0 15 32 4 1 10 134 99 23 chain 4713 chr11 135086622 + 113171768 113171847 MLT1C 463 + 3 81 87183 19 12 11 48 chain 17422 chr11 135086622 + 113199600 113199793 L1PA3long 6157 + 5964 6157 59326 193 chain 539516 chr11 135086622 + 113223953 113230093 L1PA5 6144 + 0 6144 1372 533 1 0 844 1 2 877 0 2 288 0 1 655 2 1 556 2 1 200 0 1 517 0 2 148 1 0 704 0 1 811 chain 4674 chr11 135086622 + 113303668 113303738 L1PB1 5432 + 5355 5422 87410 15 1 0 22 1 0 12 1 0 18 chain 53419 chr11 135086622 + 113313362 113314068 LTR8 732 + 11 732 28421 4 0 1 16 2 11 146 0 1 119 0 3 25 1 0 200 0 1 38 8 9 147 chain 4610 chr11 135086622 + 113368802 113368882 MADE1 96 + 0 96 87747 32 1 17 47 chain 106173 chr11 135086622 + 113485073 113486829 L1PB1 5432 + 3659 5082 17548 66 19 9 53 5 0 97 317 0 77 0 2 63 15 1 187 0 1 271 1 2 125 6 2 121 19 5 157 2 0 23 0 29 132 chain 96982 chr11 135086622 + 113523684 113524816 SVA_A 1864 + 13 1864 18657 189 1 0 29 0 15 198 0 2 16 0 708 536 12 5 103 0 2 48 chain 63152 chr11 135086622 + 113535513 113536285 L1PA8 5853 + 5078 5853 25589 397 0 9 82 1 0 43 2 0 69 2 1 13 1 0 14 0 1 33 2 1 19 1 0 93 chain 241835 chr11 135086622 + 113582737 113585748 HERVL-int 5654 + 0 5654 8430 159 8 2644 1153 8 2 153 0 15 219 0 1 78 1 2 49 0 1 299 0 1 46 1 0 403 17 5 149 5 9 17 0 1 28 0 1 129 2 3 87 chain 25208 chr11 135086622 + 113585753 113586158 MLT2A1 477 + 19 477 48934 121 1 2 27 1 5 21 19 17 11 1 4 112 9 61 11 3 0 8 1 0 38 1 0 20 chain 25623 chr11 135086622 + 113604649 113604979 L1PA6 6164 + 5834 6159 48278 169 1 0 8 5 6 91 3 1 44 3 0 6 chain 203454 chr11 135086622 + 113607870 113610088 L1PA3long 6157 + 3923 6142 9592 1350 0 1 868 chain 4841 chr11 135086622 + 113610681 113610745 HY4 93 + 29 90 86469 43 3 0 18 chain 559193 chr11 135086622 + 113656612 113662756 L1PA3long 6157 + 4 6157 194 563 0 4 2125 0 1 565 0 1 4 1 0 153 0 4 2733 chain 5614 chr11 135086622 + 113669358 113669426 MER5A 189 + 6 74 82736 68 chain 52477 chr11 135086622 + 113670325 113670996 PABL_B 668 + 0 668 28737 78 0 5 14 8 12 128 1 0 59 12 0 287 0 1 84 chain 107714 chr11 135086622 + 113701167 113703566 THE1C-int 1605 + 23 1598 17357 73 0 57 11 3 0 174 8 10 32 903 0 60 15 22 53 0 1 169 51 54 13 6 0 64 0 1 314 26 40 228 1 2 168 0 2 27 chain 128871 chr11 135086622 + 113717025 113718576 L1PA7 6471 + 4905 6459 14168 320 0 2 64 6 5 58 4 3 264 1 0 79 0 2 655 6 8 94 chain 4068 chr11 135086622 + 113731644 113731690 MADE1 96 + 49 95 90959 46 chain 83183 chr11 135086622 + 113777039 113778056 LTR5A 1029 + 0 1029 20987 116 0 3 15 0 13 20 15 1 588 15 25 248 chain 23148 chr11 135086622 + 113792712 113792990 AluSc 308 + 2 279 52144 255 2 1 21 chain 3983 chr11 135086622 + 113865907 113865953 L1MB5 1630 + 645 691 91562 46 chain 7745 chr11 135086622 + 113885028 113885152 MER57B2 428 + 107 257 75499 17 19 45 88 chain 25192 chr11 135086622 + 113948585 113948877 AluSp 311 + 4 296 48958 292 chain 11087 chr11 135086622 + 113949491 113949712 MER4B 649 + 0 246 68435 25 2 0 22 35 45 69 14 8 25 0 23 29 chain 64711 chr11 135086622 + 113964112 113964891 LTR17 781 + 0 781 25262 218 8 9 100 1 0 405 0 1 40 0 1 7 chain 5141 chr11 135086622 + 113966785 113966850 MLT1A0 366 + 48 147 84958 53 0 34 12 chain 6707 chr11 135086622 + 114009229 114009310 L1MB7 1623 + 1094 1175 78620 81 chain 11330 chr11 135086622 + 114096960 114097370 L1MB3 1562 + 1102 1475 68034 56 46 49 8 4 0 77 182 146 37 chain 4042 chr11 135086622 + 114189869 114189923 L1MB7 1623 + 1376 1429 91141 46 1 0 7 chain 3184 chr11 135086622 + 114282381 114282425 L1ME5 779 + 32 73 98036 35 3 0 6 chain 12807 chr11 135086622 + 114325032 114325189 L1PA8A 6298 + 6136 6288 65431 52 1 0 62 4 0 38 chain 16783 chr11 135086622 + 114329306 114329630 L1PB1 5432 + 5137 5427 60050 9 1 0 10 2 0 3 2 0 8 2 0 53 3 2 14 1 0 45 1 0 15 14 1 25 7 5 4 1 0 15 2 0 24 1 0 22 1 0 12 1 0 14 3 0 9 chain 3398 chr11 135086622 + 114350236 114350273 MER5A 189 + 142 179 96087 37 chain 302870 chr11 135086622 + 114488448 114492169 L1PA4 6152 + 2727 6151 6767 883 1 3 674 0 2 349 0 5 515 311 0 140 0 4 75 0 1 773 chain 241049 chr11 135086622 + 114505067 114508522 L1PA13 3608 + 86 3488 8451 4 1 0 18 1 5 23 11 10 17 1 0 14 3 0 29 21 14 69 6 4 123 14 12 17 2 0 16 6 2 19 1 0 18 3 1 15 2 0 16 1 0 38 1 0 61 2 0 89 0 4 32 0 1 90 11 13 5 2 0 188 1 0 46 42 34 770 6 5 53 0 4 16 4 1 6 0 10 32 0 1 4 1 0 192 0 1 6 4 0 14 39 25 85 0 4 54 15 9 161 4 0 14 5 6 122 0 3 166 0 1 110 2 1 37 1 0 82 1 0 32 1 0 114 1 0 62 1 0 54 2 1 5 2 0 34 0 1 12 2 0 5 2 0 20 1 0 20 chain 27201 chr11 135086622 + 114525363 114525921 LTR4 552 + 0 531 45962 56 31 27 48 36 16 19 1 0 14 34 78 19 2 0 47 19 0 69 39 14 124 chain 9143 chr11 135086622 + 114527127 114527235 U13_ 108 + 0 108 72250 108 chain 545824 chr11 135086622 + 114533301 114539438 L1PA4 6152 + 1 6146 980 114 0 1 1337 0 4 707 1 0 195 0 1 801 0 2 20 1 0 427 1 3 1051 0 3 695 4 0 428 0 1 355 chain 57816 chr11 135086622 + 114563484 114564408 L1PB1 5432 + 4480 5383 27015 148 10 8 123 6 7 166 1 19 47 1 0 105 1 0 11 1 0 24 1 0 6 1 0 13 25 19 45 7 1 14 1 0 35 15 13 12 1 0 4 19 8 18 3 1 5 1 0 14 2 0 24 1 0 13 chain 37889 chr11 135086622 + 114569746 114570242 HERV1_LTRc 486 + 0 478 36150 92 8 6 118 12 0 213 5 0 18 0 1 30 chain 118555 chr11 135086622 + 114575631 114577538 L1PB1 5432 + 3747 5422 15801 464 1 0 6 0 1 269 0 1 141 0 1 98 0 4 67 1 7 7 1 0 4 0 1 279 232 18 19 1 0 12 18 13 9 2 0 52 2 1 16 1 0 44 1 0 15 69 53 21 1 0 23 1 0 11 1 0 18 chain 99934 chr11 135086622 + 114588037 114589848 HUERS-P3-int 2218 + 634 2191 18309 99 0 1 17 34 25 14 105 16 786 35 36 146 1 2 151 34 37 54 103 47 19 1 0 8 1 0 7 1 0 13 42 20 19 104 23 17 chain 532284 chr11 135086622 + 114625663 114631671 L1PA3long 6157 + 0 6145 1738 151 29 30 595 0 128 52 0 4 193 9 12 2015 1 0 517 0 2 942 1 0 953 0 1 550 chain 61086 chr11 135086622 + 114655732 114656504 L1PA8A 6298 + 4115 4916 26086 23 5 1 80 1 6 30 0 17 223 1 0 386 0 12 23 chain 2924 chr11 135086622 + 114712132 114712165 U2 167 + 0 33 100631 33 chain 7124 chr11 135086622 + 114725805 114725912 MER73 639 + 470 575 77181 61 3 0 7 5 6 31 chain 95775 chr11 135086622 + 114768838 114769960 L1PA7 6471 + 5339 6459 18798 275 0 1 95 3 0 467 2 0 134 1 3 145 chain 546843 chr11 135086622 + 114805224 114811345 L1PA4 6152 + 23 6151 919 272 2 1 164 6 0 120 1 0 656 1 0 216 0 5 1120 1 0 928 0 1 842 0 4 952 0 4 444 0 3 396 chain 119272 chr11 135086622 + 114842957 114844256 L1HS 6032 + 1714 3015 15647 1262 0 2 37 chain 4204 chr11 135086622 + 114901920 114901978 L1MA3 4352 + 22 80 90093 10 0 1 4 1 0 43 chain 24937 chr11 135086622 + 114926661 114927030 THE1B 368 + 0 368 49374 43 27 41 7 14 0 83 1 0 194 chain 3480 chr11 135086622 + 114968667 114968705 L1PB3 3668 + 3328 3366 95379 38 chain 6902 chr11 135086622 + 115018745 115018864 MER2 342 + 147 262 77941 61 28 24 30 chain 10091 chr11 135086622 + 115024247 115024379 L1PB2 3958 + 3709 3838 70214 40 2 0 26 1 0 63 chain 26225 chr11 135086622 + 115036899 115037305 MER57B1 401 + 0 401 47384 48 11 5 133 5 11 6 6 0 24 0 7 7 7 0 134 11 12 14 chain 6971 chr11 135086622 + 115068857 115068963 MLT1C 463 + 4 113 77708 12 9 12 85 chain 3712 chr11 135086622 + 115138889 115139033 MER58A 224 + 61 216 93521 23 85 96 36 chain 17436 chr11 135086622 + 115272715 115272915 L1PA2 6032 + 5835 6032 59310 191 3 0 6 chain 4656 chr11 135086622 + 115435842 115435899 MER58B 340 + 274 331 87501 57 chain 40519 chr11 135086622 + 115474403 115474858 L1PA5 6144 + 5689 6142 34298 446 2 0 7 chain 34115 chr11 135086622 + 115491684 115492100 L1PA6 6164 + 5737 6159 38625 256 6 12 154 chain 28859 chr11 135086622 + 115592550 115592856 AluYb9 318 + 1 307 43536 306 chain 4113 chr11 135086622 + 115647213 115647263 MER51D 577 + 424 474 90689 50 chain 16320 chr11 135086622 + 115684829 115685218 L1PA15 4387 + 3922 4327 60606 11 1 0 12 63 91 68 1 0 27 1 0 54 1 0 17 38 35 19 17 14 43 2 0 14 chain 73545 chr11 135086622 + 115839007 115839838 L1PA5 6144 + 5305 6137 23208 488 0 1 343 chain 10339 chr11 135086622 + 115855688 115855816 MER85 139 + 1 139 69716 88 0 10 40 chain 21254 chr11 135086622 + 115926228 115926573 THE1D 372 + 0 357 54818 61 4 14 37 4 3 70 34 36 111 7 8 17 chain 545411 chr11 135086622 + 115966933 115973113 L1PA4 6152 + 0 6151 1009 353 1 2 97 16 10 118 1 0 1008 0 1 1620 1 0 44 2 1 7 0 5 483 6 0 1197 22 0 443 0 1 761 chain 472063 chr11 135086622 + 116004927 116010256 L1PA4 6152 + 11 5353 3810 527 0 1 440 1 0 105 0 1 151 1 0 123 5 6 220 0 1 253 0 15 703 0 2 1190 6 0 1604 chain 387833 chr11 135086622 + 116024368 116029746 L1PB1 5432 + 56 5420 5359 355 14 15 80 0 5 321 3 0 114 8 1 165 0 1 289 16 0 55 3 4 408 0 1 622 0 1 339 2 1 58 0 3 371 0 1 73 5 13 373 13 7 69 7 6 119 23 91 136 7 9 23 19 4 45 1 0 291 1 0 96 2 0 84 2 3 19 2 0 69 0 2 6 0 2 9 22 0 176 3 0 36 26 26 50 15 13 22 1 0 5 20 15 9 2 0 53 2 1 16 1 0 25 1 2 17 1 0 20 18 7 19 8 5 14 8 6 18 1 0 21 1 0 13 1 0 16 chain 167667 chr11 135086622 + 116145304 116147571 HUERS-P2-int 2744 + 459 2742 11236 304 0 2 25 8 46 154 10 11 70 9 5 6 0 1 112 21 0 8 2 23 454 1 5 47 6 8 512 28 9 27 10 9 143 1 0 104 4 0 37 2 1 9 13 10 15 1 0 39 3 0 34 1 0 6 1 9 10 5 3 25 chain 142303 chr11 135086622 + 116346386 116348067 SVA_C 1631 + 16 1631 12911 4 0 1 529 24 0 170 4 0 135 62 24 13 1 5 12 1 0 41 1 0 14 3 1 5 0 1 640 2 0 20 chain 2781 chr11 135086622 + 116347252 116347281 SVA_C 1631 + 815 844 66863 29 chain 5278 chr11 135086622 + 116377641 116377714 MLT1J2 417 + 318 391 84296 59 2 0 5 0 2 7 chain 2958 chr11 135086622 + 116393148 116393182 MLT1D 503 + 66 100 100294 34 chain 31032 chr11 135086622 + 116450268 116450679 LTR7 482 + 0 482 41100 69 8 46 109 8 40 41 0 1 176 chain 28657 chr11 135086622 + 116494684 116494982 AluYd8 298 + 0 298 43863 298 chain 2528 chr11 135086622 + 116528127 116528160 MER52C 1267 + 876 908 103521 9 1 0 23 chain 8582 chr11 135086622 + 116546220 116546375 Tigger2 2703 + 2485 2649 73492 61 1 2 19 24 32 50 chain 505376 chr11 135086622 + 116570827 116576273 L1PA2 6032 + 574 6026 2950 2565 1 0 2310 0 1 562 0 6 8 chain 511320 chr11 135086622 + 116666722 116672859 L1PA6 6164 + 0 6162 2697 509 6 5 288 34 0 619 5 15 28 0 1 388 0 5 48 0 5 414 0 2 12 4 1 87 0 17 100 1 4 334 0 1 147 3 0 110 0 9 41 2 1 194 0 1 514 5 7 60 0 1 7 0 3 254 0 1 24 0 1 43 0 2 62 2 0 494 0 4 353 0 1 84 8 7 41 0 1 812 chain 12752 chr11 135086622 + 116737041 116737226 L1PB4 2604 + 2299 2474 65519 36 6 0 51 2 0 20 2 1 18 1 0 49 chain 12942 chr11 135086622 + 116779898 116780045 L1PA5 6144 + 5987 6135 65187 138 0 1 9 chain 21990 chr11 135086622 + 116862801 116863090 AluSx 319 + 10 299 53848 75 2 1 52 5 6 155 chain 4712 chr11 135086622 + 116951459 116951538 MADE1 96 + 1 96 87187 41 15 31 23 chain 13471 chr11 135086622 + 116980261 116980428 MER107 203 + 0 167 64354 167 chain 12620 chr11 135086622 + 117002188 117002405 MER30 238 + 0 237 65774 17 12 14 65 5 24 6 4 0 46 3 0 5 0 2 11 0 3 14 0 1 29 chain 7982 chr11 135086622 + 117015896 117015986 HY4 93 + 0 90 74920 90 chain 23761 chr11 135086622 + 117101470 117101759 AluSc 308 + 17 299 51178 114 3 0 159 4 0 9 chain 85124 chr11 135086622 + 117112513 117113471 L1PA5 6144 + 5172 6135 20598 70 1 0 49 0 4 262 0 1 296 0 1 280 chain 309363 chr11 135086622 + 117139865 117143438 L1PA6 6164 + 2572 6162 6626 617 0 1 340 2 1 94 6 9 62 0 1 219 0 4 446 2 0 513 1 2 434 1 0 508 3 4 105 0 4 208 1 7 11 chain 16855 chr11 135086622 + 117272336 117272603 L1PA8 5853 + 5593 5853 59966 16 2 0 70 29 26 35 2 1 19 1 0 93 chain 18353 chr11 135086622 + 117540621 117540856 L1PA6 6164 + 5935 6162 58299 83 1 0 132 3 0 6 4 0 6 chain 165565 chr11 135086622 + 117567574 117569403 L1PA3long 6157 + 3345 5179 11371 1009 0 4 268 0 1 552 chain 45171 chr11 135086622 + 117571692 117572235 MER41A 554 + 2 554 31483 117 0 3 152 0 1 191 0 5 83 chain 2408 chr11 135086622 + 117580410 117580583 MIR 256 + 73 246 104122 12 8 9 21 31 102 10 72 0 19 chain 35028 chr11 135086622 + 117645520 117645910 L1PA3long 6157 + 5767 6156 38001 385 1 0 4 chain 219845 chr11 135086622 + 117810119 117812812 HERVH-int 3825 + 208 3120 9046 85 0 9 15 62 214 39 1 0 10 1 0 25 0 13 13 29 25 42 2 1 65 0 2 12 0 3 902 5 33 295 0 10 448 0 6 402 0 1 192 5 6 4 0 1 39 chain 29580 chr11 135086622 + 117813896 117814332 LTR7Y 441 + 0 441 42506 103 9 0 57 70 85 172 1 0 24 chain 3508 chr11 135086622 + 117892402 117892454 Charlie1a 1436 + 668 717 95184 44 3 0 5 chain 3427 chr11 135086622 + 117903159 117903206 MER65A 464 + 0 44 95844 39 3 0 5 chain 17375 chr11 135086622 + 117923624 117923847 L1PA5 6144 + 5923 6144 59387 60 6 8 6 2 0 138 2 0 9 chain 45819 chr11 135086622 + 118062761 118063315 MER41A 554 + 0 554 31154 554 chain 5475 chr11 135086622 + 118065560 118065644 MER51A 677 + 185 260 83330 14 9 0 61 chain 25877 chr11 135086622 + 118183360 118184052 L1PB2 3958 + 3460 3838 47901 83 26 25 50 1 0 49 308 0 14 2 1 70 3 1 22 1 0 63 chain 21764 chr11 135086622 + 118190225 118190552 THE1A 353 + 13 350 54148 6 0 1 27 0 1 38 40 39 162 0 9 54 chain 126031 chr11 135086622 + 118190868 118192444 THE1A-int 1579 + 0 1579 14548 170 1 0 5 17 18 443 9 12 4 1 0 4 0 1 519 0 1 83 1 0 111 2 1 102 0 1 104 chain 18500 chr11 135086622 + 118192874 118193103 THE1A 353 + 125 353 58104 224 1 0 4 chain 8183 chr11 135086622 + 118282215 118282362 Tigger1 2417 + 330 487 74455 24 3 9 26 2 3 22 0 2 35 12 13 23 chain 81448 chr11 135086622 + 118283442 118285481 Tigger1 2417 + 1 1252 21344 13 0 15 14 15 0 42 16 27 67 68 69 161 4 6 36 10 12 157 0 4 358 829 18 72 0 1 45 0 3 10 3 2 119 chain 7114 chr11 135086622 + 118297712 118297804 MER53 195 + 5 97 77212 92 chain 13363 chr11 135086622 + 118317568 118317746 L1PA8 5853 + 5679 5853 64522 21 2 0 40 2 1 19 1 0 93 chain 44918 chr11 135086622 + 118324297 118325035 L1PB1 5432 + 4736 5388 31625 76 6 4 284 9 0 10 56 0 4 1 0 20 1 0 12 8 0 12 15 9 53 3 2 14 1 0 44 1 0 16 8 14 17 2 0 5 1 0 14 2 0 24 1 0 18 chain 5495 chr11 135086622 + 118336360 118336419 HERVL-int 5654 + 5437 5496 83258 59 chain 82495 chr11 135086622 + 118463748 118465476 HSMAR2 1300 + 1 1300 21123 13 6 4 10 4 3 16 5 8 15 1 0 164 0 1 67 10 21 54 13 18 120 313 0 13 0 1 265 1 0 63 0 1 66 23 25 41 230 91 133 0 3 58 0 1 24 chain 5614 chr11 135086622 + 118593993 118594065 U6 107 + 6 78 82734 72 chain 61026 chr11 135086622 + 118668938 118670007 L1MA3 4352 + 3359 4352 26096 19 1 3 11 14 15 34 40 0 271 48 49 301 90 59 35 0 1 23 1 0 78 2 0 24 2 1 5 1 0 26 3 2 12 1 0 5 5 2 17 chain 61951 chr11 135086622 + 118671300 118672837 L1M1 2793 + 1064 1944 25875 115 1 0 71 3 1 23 2 0 30 10 0 174 0 3 28 0 3 71 21 6 82 2 0 123 684 54 43 1 0 53 chain 6940 chr11 135086622 + 118715805 118715912 LTR39 781 + 43 146 77809 4 0 1 14 3 2 14 4 0 68 chain 13060 chr11 135086622 + 118732382 118732597 LTR39 781 + 188 392 65007 63 1 0 14 9 0 8 22 21 98 chain 30751 chr11 135086622 + 118738144 118738526 THE1C-int 1605 + 1 440 41351 11 3 5 4 0 1 74 0 57 17 3 0 270 chain 7429 chr11 135086622 + 118836012 118836107 HY3 101 + 3 98 76309 21 0 1 53 1 0 20 chain 9447 chr11 135086622 + 118845236 118845388 MER30 238 + 86 238 71611 20 16 7 39 0 6 37 1 4 39 chain 9872 chr11 135086622 + 118866344 118866466 MER41B 635 + 511 634 70682 26 0 1 96 chain 65043 chr11 135086622 + 118866551 118867768 MER41-int 2638 + 1363 2319 25181 54 0 5 33 6 8 82 2 4 108 0 1 10 1 0 141 2 0 35 5 4 25 3 1 30 1 0 121 0 3 5 3 1 58 7 6 20 0 1 128 7 8 5 1 0 21 265 0 38 chain 25277 chr11 135086622 + 118877140 118877443 AluSc5 308 + 1 301 48823 63 2 0 67 1 0 170 chain 6309 chr11 135086622 + 118970506 118970587 HY4 93 + 9 84 79965 27 6 0 48 chain 8002 chr11 135086622 + 118994559 118994652 HY4 93 + 0 93 74882 93 chain 20458 chr11 135086622 + 119199599 119200288 MER4D1 891 + 530 884 55822 73 0 5 52 38 7 69 343 36 24 12 11 14 1 0 63 chain 42148 chr11 135086622 + 119201254 119201772 MER41A 554 + 13 554 33279 368 3 26 147 chain 6502 chr11 135086622 + 119406945 119407085 L1MA5A 2387 + 2187 2295 79339 27 46 15 32 1 0 34 chain 4463 chr11 135086622 + 119427445 119427500 MLT1H2 457 + 84 139 88539 55 chain 8706 chr11 135086622 + 119454497 119454634 Tigger3a 397 + 139 276 73200 10 10 0 10 1 11 106 chain 223489 chr11 135086622 + 119561947 119564887 L1PA13 3608 + 564 3497 8945 57 4 5 5 2 0 96 1 6 1224 1 0 190 2 0 98 5 0 67 0 1 299 0 1 38 0 1 4 1 0 59 1 0 8 0 3 370 0 1 35 1 0 28 1 0 114 2 0 61 1 0 27 1 0 29 8 5 39 5 6 7 2 0 20 1 0 19 0 3 7 chain 3539 chr11 135086622 + 119592708 119592746 MER41B 635 + 511 549 94954 38 chain 4349 chr11 135086622 + 119719434 119719482 MIR 256 + 49 97 89173 48 chain 4553 chr11 135086622 + 119760412 119760466 MER58C 217 + 160 214 88053 54 chain 25737 chr11 135086622 + 119848819 119849091 AluYa5 310 + 38 310 48111 272 chain 17726 chr11 135086622 + 119899555 119899797 L1PA8 5853 + 5609 5847 58981 69 2 1 9 1 0 52 2 1 19 2 1 86 chain 7244 chr11 135086622 + 120026369 120026655 LTR12C 1709 + 773 1037 76830 64 79 0 25 78 0 15 8 143 17 chain 3278 chr11 135086622 + 120026433 120026512 LTR12C 1709 + 1125 1163 92124 34 41 0 4 chain 2343 chr11 135086622 + 120048774 120049014 L1MD1 2063 + 95 333 104485 6 1 0 21 193 192 19 chain 38561 chr11 135086622 + 120143501 120143980 LTR2 463 + 0 463 35670 138 26 10 315 chain 12835 chr11 135086622 + 120278753 120278922 L1PA7 6471 + 6299 6468 65383 54 6 7 97 1 0 11 chain 4008 chr11 135086622 + 120348500 120348549 Tigger4b 360 + 139 188 91395 49 chain 18914 chr11 135086622 + 120361167 120361479 MER1B 344 + 0 343 57627 23 1 35 26 2 0 43 10 8 116 33 34 58 chain 13106 chr11 135086622 + 120436607 120436797 MER2 342 + 83 281 64919 26 0 1 9 1 0 96 13 21 45 chain 4035 chr11 135086622 + 120466696 120466740 MER58B 340 + 267 311 91202 44 chain 9975 chr11 135086622 + 120931555 120931687 MIR 256 + 42 173 70471 109 1 0 12 1 0 4 0 1 5 chain 28535 chr11 135086622 + 121006200 121006574 THE1C 375 + 0 375 44062 124 3 0 5 6 10 46 1 2 162 1 0 26 chain 114296 chr11 135086622 + 121021478 121022803 LTR12C 1709 + 2 1709 16502 670 0 278 162 1 0 4 4 2 42 0 1 63 0 4 209 0 102 170 chain 70740 chr11 135086622 + 121069996 121070832 L1PA6 6164 + 5294 6151 23819 20 1 5 777 1 18 37 chain 69516 chr11 135086622 + 121214513 121216021 L1PB1 5432 + 4283 5427 24118 286 53 52 5 2 0 82 1 0 118 1 2 204 0 15 7 26 8 41 1 2 9 11 0 24 26 20 10 2 0 52 2 1 16 1 0 41 3 2 16 3 0 6 381 52 16 1 0 22 1 0 12 1 0 14 1 0 5 1 0 4 chain 5755 chr11 135086622 + 121220232 121220330 MLT1D 503 + 250 344 82111 28 11 10 50 3 0 6 chain 48407 chr11 135086622 + 121234432 121235052 PRIMA4_LTR 623 + 0 623 30144 144 2 4 113 1 2 28 0 1 99 0 1 160 12 10 61 chain 34724 chr11 135086622 + 121237135 121237613 HERVK14-int 1672 + 5 483 38209 4 1 0 21 1 0 9 0 2 47 1 0 49 3 2 161 15 19 14 3 1 149 chain 18817 chr11 135086622 + 121240139 121240494 LTR14B 630 + 232 630 57758 57 17 38 33 0 10 30 19 29 83 47 49 69 chain 51255 chr11 135086622 + 121280973 121281592 LTR14B 630 + 9 630 29146 7 0 2 612 chain 28094 chr11 135086622 + 121285416 121285857 LTR3B_ 500 + 4 457 44729 74 2 1 53 1 0 163 5 6 37 1 4 17 0 1 19 43 52 26 chain 26956 chr11 135086622 + 121290803 121291193 L1PA8 5853 + 5483 5847 46327 38 2 0 43 1 0 26 0 1 19 2 0 8 25 7 57 1 0 6 1 0 52 2 1 19 1 0 87 chain 173436 chr11 135086622 + 121379239 121381965 L1PBa 3878 + 90 2454 10932 10 2 1 34 78 30 47 1 0 25 3 1 142 7 3 112 8 6 5 0 2 18 1 0 130 7 12 308 1 0 4 5 7 623 8 7 5 2 0 35 4 11 43 0 1 274 0 2 7 2 0 156 0 1 23 5 10 23 2 1 5 321 0 240 chain 37661 chr11 135086622 + 121387575 121388230 L1PB1 5432 + 4768 5403 36298 65 14 13 257 58 55 10 2 0 51 1 0 12 6 5 37 1 0 7 1 0 16 3 0 6 16 6 19 18 23 20 1 0 21 1 0 12 chain 92550 chr11 135086622 + 121568950 121570024 MER11C 1089 + 0 1079 19266 313 0 4 252 1 0 207 0 1 117 0 1 72 1 2 29 6 5 76 chain 15629 chr11 135086622 + 121658372 121658605 MER2 342 + 87 322 61497 17 0 2 151 10 9 28 5 6 22 chain 128639 chr11 135086622 + 121752076 121753464 L1PA3long 6157 + 4769 6157 14200 1388 chain 46002 chr11 135086622 + 121796822 121797361 MER41A 554 + 13 554 31062 29 0 1 77 0 1 433 chain 313199 chr11 135086622 + 121823853 121827182 L1HS 6032 + 139 3468 6550 3329 chain 545401 chr11 135086622 + 121854898 121861346 L1PA4 6152 + 6 6151 1011 454 6 0 120 1 0 459 0 1 1174 0 1 956 1 0 18 305 0 64 0 1 637 1 2 105 0 3 355 0 4 1540 1 0 251 chain 14938 chr11 135086622 + 121883967 121884178 MER30 238 + 0 238 62337 97 12 1 10 0 32 12 0 6 80 chain 10941 chr11 135086622 + 121911558 121911795 L1PA15 4387 + 4080 4308 68631 16 12 11 24 1 0 50 5 4 22 4 0 10 1 0 26 1 3 10 20 17 35 chain 272873 chr11 135086622 + 121974621 121978725 L1PB1 5432 + 647 5413 7634 109 1 2 292 0 2 338 42 29 182 4 9 364 1 6 252 317 0 106 10 6 147 3 1 99 0 1 74 0 1019 41 14 0 4 2 0 262 8 7 234 12 13 382 0 1 71 0 4 60 3 8 120 1 0 6 4 5 200 0 3 8 1 0 24 1 0 9 16 11 9 2 0 53 19 17 43 1 0 16 1 0 4 22 11 16 8 5 16 2 0 22 1 0 21 1 0 13 1 0 9 chain 4125 chr11 135086622 + 121988380 121988443 L1PB1 5432 + 5332 5391 90615 14 2 0 24 1 0 14 1 0 7 chain 162705 chr11 135086622 + 121994326 121996171 L1PA5 6144 + 3913 5768 11562 4 0 1 337 0 3 83 0 4 513 0 2 908 chain 4801 chr11 135086622 + 122004390 122004448 U6 107 + 46 104 86690 58 chain 29102 chr11 135086622 + 122009865 122010303 MLT2A1 477 + 0 477 43185 46 2 1 95 27 32 202 24 60 22 1 0 19 chain 455034 chr11 135086622 + 122010303 122015977 HERVL-int 5654 + 0 5654 4256 98 0 1 221 0 1 139 0 2 121 1 0 251 1 2 47 4 3 53 0 1 4 1 0 71 72 13 269 0 5 171 0 1 9 9 23 46 0 2 522 1 10 264 0 3 137 0 1 50 1 2 51 1 2 418 0 1 129 0 1 133 1 0 274 3 0 359 1 0 16 0 1 4 6 5 27 0 2 26 5 4 236 11 0 6 0 12 116 4 8 441 0 1 73 3 0 93 3 0 452 0 1 219 chain 28367 chr11 135086622 + 122015977 122016384 MLT2A1 477 + 0 413 44320 47 1 0 95 27 32 68 0 2 16 0 6 119 1 0 21 5 0 7 chain 14024 chr11 135086622 + 122023879 122024177 L1MB3 1562 + 1272 1555 63556 40 13 16 23 1 0 62 43 20 5 2 0 49 2 11 22 11 10 25 chain 22781 chr11 135086622 + 122053078 122053336 L1PA4 6152 + 4505 4763 52700 258 chain 122108 chr11 135086622 + 122053336 122054706 L1PA4 6152 + 4773 6143 15178 1370 chain 25463 chr11 135086622 + 122065535 122065912 THE1C 375 + 1 375 48535 124 9 6 52 1 2 5 1 0 20 0 3 58 0 3 5 14 9 62 1 0 25 chain 60722 chr11 135086622 + 122198866 122199563 L1PA5 6144 + 5434 6132 26171 302 0 1 395 chain 10068 chr11 135086622 + 122236270 122236392 L1PB 1623 + 745 866 70261 4 1 0 117 chain 79595 chr11 135086622 + 122262684 122263560 L1PA3long 6157 + 4758 5634 21718 876 chain 27074 chr11 135086622 + 122297462 122297753 AluY 311 + 19 311 46162 113 0 1 178 chain 155273 chr11 135086622 + 122351249 122353049 L1PA6 6164 + 4363 6162 12047 105 0 1 566 1 0 280 1 0 847 chain 103393 chr11 135086622 + 122378163 122379690 L1PB1 5432 + 3921 5420 17901 41 2 1 162 0 3 347 2 7 4 1 0 131 14 19 27 4 0 50 7 8 134 11 7 142 0 1 41 0 1 5 1 0 34 0 4 13 24 18 17 1 0 9 1 0 9 20 14 50 2 1 16 1 0 43 1 0 16 3 0 7 14 5 19 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 99342 chr11 135086622 + 122400417 122401747 L1PA11 4918 + 3180 4504 18371 77 0 5 254 5 7 17 0 1 132 0 1 660 6 0 14 22 18 22 23 21 66 3 1 12 1 0 16 chain 31375 chr11 135086622 + 122448334 122448707 L1PA6 6164 + 5790 6162 40830 41 0 1 324 2 0 6 chain 2712 chr11 135086622 + 122457849 122457897 L1MA4 2864 + 2753 2799 102274 14 8 6 26 chain 157862 chr11 135086622 + 122476873 122478553 L1HS 6032 + 4353 6032 11891 1527 1 0 152 chain 28986 chr11 135086622 + 122510720 122511034 L1PA2 6032 + 5716 6030 43351 314 chain 39340 chr11 135086622 + 122518375 122518835 LTR2 463 + 0 463 35121 55 0 3 405 chain 29721 chr11 135086622 + 122546526 122547025 LTR7 482 + 0 482 42345 114 0 51 15 102 0 45 4 36 158 12 14 49 chain 275250 chr11 135086622 + 122547027 122551367 HERVH-int 3825 + 0 3825 7575 333 2 1 201 1 0 13 21 50 14 7 6 13 21 0 18 3 23 26 2 1 80 1 0 290 0 1 158 15 0 172 418 71 129 4 3 178 15 0 140 1 0 7 62 64 205 45 49 142 1 2 268 2 1 38 0 1 276 198 32 9 1 0 810 chain 36663 chr11 135086622 + 122555153 122555602 LTR7 482 + 0 482 36976 266 0 31 122 12 14 49 chain 79247 chr11 135086622 + 122556640 122557789 LTR12D 1347 + 0 1347 21793 39 7 13 197 6 8 16 0 1 24 3 38 201 0 31 124 103 26 17 1 0 103 12 13 83 0 200 213 chain 8407 chr11 135086622 + 122557259 122557360 LTR12D 1347 + 575 676 69927 101 chain 10856 chr11 135086622 + 122558702 122558920 L1MA6 2487 + 1928 2187 68764 22 1 4 48 1 0 21 9 14 5 0 3 24 36 62 44 0 5 7 chain 6741 chr11 135086622 + 122559946 122560019 tRNA-Lys-AAA 73 + 0 73 78509 73 chain 12419 chr11 135086622 + 122565300 122565452 L1MA5A 2387 + 1362 1512 66108 124 2 0 26 chain 39851 chr11 135086622 + 122579995 122580501 LTR10F 562 + 0 562 34772 174 0 49 7 5 8 11 9 16 13 4 0 226 0 1 57 chain 284934 chr11 135086622 + 122824832 122831152 HERVH-int 3825 + 0 3825 7285 336 1 0 194 1 0 11 1 0 4 0 1 24 1 0 10 1 0 11 61 0 8 1 31 13 121 0 12 2 1 27 2 0 14 1 0 20 65 0 62 0 1 4 2 0 57 4 0 385 15 0 201 9 0 31 0 2 10 1 0 4 2494 0 211 4 31 290 0 4 62 23 30 968 9 11 39 8 218 260 0 2 225 chain 4282 chr11 135086622 + 122825436 122825488 HERVH-int 3825 + 482 533 85931 50 1 0 1 chain 227537 chr11 135086622 + 122826570 122829051 L1PA2 6032 + 3545 6032 8826 1637 0 4 830 0 2 14 chain 17543 chr11 135086622 + 123024045 123024246 AluSp 311 + 95 296 59189 201 chain 7889 chr11 135086622 + 123106115 123106248 MER30 238 + 91 233 75151 13 17 23 25 0 6 32 3 0 43 chain 23672 chr11 135086622 + 123222771 123223151 MSTA 426 + 0 426 51324 108 20 48 49 3 1 8 0 2 20 23 21 39 1 21 109 chain 2002 chr11 135086622 + 123224917 123224980 L1MA4 2864 + 2724 2780 106260 14 18 13 14 3 1 14 chain 43127 chr11 135086622 + 123259334 123259846 MER9a1 513 + 0 513 32697 202 8 9 302 chain 85092 chr11 135086622 + 123279702 123280710 LTR5A 1029 + 0 1029 20606 89 1 0 44 1 14 102 0 9 771 chain 53963 chr11 135086622 + 123281092 123281783 L1PA8 5853 + 5158 5853 28242 120 0 10 37 0 1 238 2 1 43 2 0 63 9 8 14 1 0 47 2 1 19 1 0 93 chain 10218 chr11 135086622 + 123301391 123301524 U8 134 + 0 134 69975 44 1 2 88 chain 18822 chr11 135086622 + 123342870 123343205 MSTA 426 + 6 392 57749 16 1 7 37 12 11 30 20 44 55 4 0 14 0 8 8 11 8 49 3 24 75 chain 22312 chr11 135086622 + 123462666 123462901 SVA_F 1814 + 1579 1814 53396 235 chain 26438 chr11 135086622 + 123667535 123667887 THE1B 368 + 0 364 47070 44 0 15 113 1 0 139 10 8 45 chain 28003 chr11 135086622 + 123759752 123760050 AluYb8 318 + 15 313 44860 298 chain 102652 chr11 135086622 + 123831465 123833094 L1PB1 5432 + 3835 5422 17989 5 0 1 88 1 0 285 12 15 346 0 1 52 3 0 24 0 6 45 0 2 107 0 1 85 32 14 93 1 0 98 13 11 16 4 3 10 2 1 12 31 25 39 3 2 14 1 0 22 0 2 20 2 1 9 124 103 11 1 0 18 chain 27616 chr11 135086622 + 123835656 123835972 L1PA8A 6298 + 5975 6291 45440 316 chain 56892 chr11 135086622 + 123872627 123876861 MER4E1 777 + 0 775 27301 21 2 0 79 0 1 234 3462 0 55 0 1 150 17 20 214 chain 172465 chr11 135086622 + 123952042 123954303 L1PA10 4194 + 1838 4099 10977 345 0 1 4 1 0 24 10 0 308 12 11 4 0 1 70 18 17 20 16 14 14 0 4 52 1 0 12 1 0 92 0 1 83 6 9 372 0 6 405 0 1 391 chain 150384 chr11 135086622 + 123967372 123969066 L1PA5 6144 + 4437 6139 12322 7 0 1 849 0 5 790 2 4 46 chain 93706 chr11 135086622 + 123988025 123989057 L1PA3long 6157 + 5119 6157 19080 191 0 4 670 0 2 171 chain 15412 chr11 135086622 + 124033200 124033374 L1PA5 6144 + 5821 5995 61771 174 chain 15491 chr11 135086622 + 124052555 124052743 L1PA8A 6298 + 6097 6290 61667 53 0 2 33 0 1 60 0 2 42 chain 7943 chr11 135086622 + 124157546 124157712 L1PB1 5432 + 5236 5384 75014 44 1 0 16 1 0 4 19 9 18 8 5 14 2 0 24 1 0 14 chain 33559 chr11 135086622 + 124190339 124190824 LTR19B 566 + 2 490 39038 163 0 3 21 13 14 99 1 0 40 2 1 40 36 37 70 chain 14067 chr11 135086622 + 124192827 124193186 L1PB1 5432 + 5106 5422 63494 10 3 0 16 2 0 6 3 2 4 1 0 13 6 2 9 2 0 52 3 2 9 7 6 37 8 7 15 16 12 18 9 6 14 2 0 15 19 4 5 1 0 21 1 0 13 1 0 18 chain 42083 chr11 135086622 + 124200446 124201390 LTR1 825 + 116 817 33301 66 321 14 34 60 116 32 1 0 27 1 4 16 0 1 217 0 2 53 0 1 36 0 1 40 1 2 39 chain 65525 chr11 135086622 + 124236986 124237700 L1PA3long 6157 + 5443 6157 25068 714 chain 47419 chr11 135086622 + 124270705 124271275 LTR14C 587 + 0 570 30498 570 chain 119559 chr11 135086622 + 124280666 124282370 L1PB1 5432 + 3726 5395 15599 6 3 0 237 0 1 202 1 0 92 0 5 359 3 0 21 0 6 60 2 0 87 8 13 85 6 0 83 3 1 119 1 2 9 3 0 24 1 0 7 25 17 5 2 0 52 1 0 18 1 0 43 1 0 18 3 0 13 9 0 16 8 5 14 2 0 24 1 0 21 1 0 4 chain 78719 chr11 135086622 + 124282761 124284111 L1PA7 6471 + 5416 6454 21936 186 0 1 6 1 0 12 349 30 49 0 2 47 7 0 92 2 3 48 0 2 413 1 2 60 5 13 72 chain 9924 chr11 135086622 + 124294501 124294630 MER85 139 + 0 139 70573 88 1 11 40 chain 40877 chr11 135086622 + 124327465 124328010 LTR19B 566 + 0 566 34043 26 3 13 162 5 15 211 6 8 62 0 2 14 4 1 16 1 0 4 3 4 28 chain 39114 chr11 135086622 + 124335958 124336381 L1PA2 6032 + 5609 6028 35276 97 4 0 322 chain 74088 chr11 135086622 + 124351119 124351986 L1PA7 6471 + 5591 6461 23070 30 1 0 77 0 2 231 0 1 388 0 1 140 chain 4225 chr11 135086622 + 124354426 124354489 MSTC 436 + 332 394 89968 19 5 4 39 chain 56964 chr11 135086622 + 124362860 124363527 L1PA7 6471 + 5799 6466 27279 667 chain 277313 chr11 135086622 + 124391167 124394260 L1PA3long 6157 + 3043 6155 7512 92 0 5 30 3 1 321 0 3 1745 0 2 284 0 8 491 1 4 126 chain 3586 chr11 135086622 + 124432159 124432200 LTR24B 570 + 529 570 94542 41 chain 47855 chr11 135086622 + 124459333 124459981 LTR12 884 + 1 884 30342 134 1 135 106 2 0 64 14 15 151 1 103 175 chain 87644 chr11 135086622 + 124488549 124489515 L1PA3long 6157 + 5191 6157 20111 966 chain 75846 chr11 135086622 + 124505580 124506422 L1P1 4361 + 3488 4328 22629 663 1 0 154 1 0 23 chain 112324 chr11 135086622 + 124553987 124555265 L1P1 4361 + 3038 4317 16776 207 0 3 903 1 0 154 1 0 12 chain 103269 chr11 135086622 + 124586957 124588495 L1PB1 5432 + 3967 5427 17922 49 0 2 19 1 3 67 1 0 46 0 5 5 1 2 367 1 3 41 0 1 131 1 0 106 0 2 66 0 1 89 0 2 129 3 2 10 70 9 14 28 22 8 2 0 51 1 0 17 1 0 45 1 0 15 3 1 8 2 1 5 8 0 16 2 0 5 1 0 13 3 1 24 2 1 20 1 0 13 1 0 18 2 0 5 chain 8274 chr11 135086622 + 124636458 124636548 5S 121 + 0 90 74227 90 chain 3654 chr11 135086622 + 124688837 124688916 MADE1 96 - 1 96 93980 32 23 39 24 chain 70031 chr11 135086622 + 124704553 124705332 SVA_D 2077 + 1236 2061 23988 103 0 50 457 4 0 215 chain 83767 chr11 135086622 + 124805933 124807433 Charlie3 2679 + 19 1238 20855 15 1 0 59 0 3 6 36 8 157 32 92 343 1 0 44 322 6 177 2 3 88 8 9 209 chain 35201 chr11 135086622 + 124928524 124928981 MER4A1 472 + 0 472 37896 50 0 1 112 6 0 62 7 27 220 chain 97244 chr11 135086622 + 124947832 124949039 L1P2 5180 + 2016 3240 18626 99 2 0 23 0 1 188 1 0 459 0 4 64 0 3 162 1 0 83 0 13 125 chain 9638 chr11 135086622 + 124949040 124949150 L1PA7 6471 + 6359 6469 71186 110 chain 24814 chr11 135086622 + 124971202 124971491 L1P2 5180 + 909 1201 49567 171 0 3 118 chain 82992 chr11 135086622 + 125045294 125046342 MER11C 1089 + 0 1064 21017 242 4 13 62 0 4 65 1 0 304 1 5 4 1 0 38 0 1 127 0 1 54 10 9 135 chain 132960 chr11 135086622 + 125089313 125090854 LTR12C 1709 + 0 1709 13742 120 1 0 145 1 2 424 0 159 261 1 0 6 2 0 107 0 4 107 0 8 366 chain 3208 chr11 135086622 + 125228203 125228243 MER3 215 + 66 107 97812 18 0 1 22 chain 7244 chr11 135086622 + 125513716 125513838 LTR48 738 + 566 689 76829 47 22 24 45 1 0 7 chain 5602 chr11 135086622 + 125526186 125526274 LTR48 738 + 189 275 82798 9 1 0 29 6 5 43 chain 565020 chr11 135086622 + 125536609 125542640 L1HS 6032 + 2 6032 95 727 3 0 2408 0 2 2893 chain 187926 chr11 135086622 + 125559135 125562411 MER57-int 2662 + 108 2662 10216 118 5 6 20 314 0 59 2 0 263 0 6 234 2 0 149 314 0 129 4 0 215 1 4 72 11 3 20 2 0 151 1 0 149 5 4 130 18 1 13 0 2 53 3 0 413 8 7 95 18 12 68 48 7 6 2 0 20 27 22 24 1 0 6 15 10 26 3 0 31 2 0 6 chain 6324 chr11 135086622 + 125607544 125607631 MER5A 189 + 52 135 79912 12 4 0 71 chain 15295 chr11 135086622 + 125615426 125615672 MER2 342 + 7 277 61924 61 39 63 146 chain 4077 chr11 135086622 + 125649756 125649802 U2 167 + 7 53 90899 46 chain 43759 chr11 135086622 + 125687284 125687796 MER9a3 513 + 0 513 32280 13 0 1 63 0 2 366 2 0 68 chain 13629 chr11 135086622 + 125691674 125691893 L1PA8 5853 + 5630 5846 64121 52 1 0 4 5 4 4 0 1 45 6 5 12 7 6 83 chain 472454 chr11 135086622 + 125705273 125711121 L1PA8 5853 + 45 5853 3799 5 2 0 21 2 0 11 1 0 13 49 13 185 27 15 313 9 13 254 0 3 666 0 1 468 7 6 44 0 1 68 0 1 335 0 4 240 0 1 156 1 0 105 0 2 405 1 0 138 1 0 254 0 1 1222 2 0 73 0 2 56 0 5 419 1 0 44 2 0 74 1 0 11 8 7 40 2 1 112 chain 326172 chr11 135086622 + 125755625 125759786 L1P3 4156 + 0 4136 6281 203 0 9 29 21 20 61 1 0 215 1 0 53 16 18 74 6 7 38 9 12 76 0 1 25 0 1 12 4 5 386 0 6 302 10 11 201 11 6 103 9 12 743 0 1 30 0 2 486 39 0 378 1 0 469 17 12 100 2 0 7 2 1 21 chain 273397 chr11 135086622 + 125781612 125784682 L1PA5 6144 + 3052 6129 7624 625 2 0 664 0 4 898 0 13 808 8 0 65 chain 466195 chr11 135086622 + 125818269 125824087 L1PA8 5853 + 50 5853 3957 22 79 41 89 10 23 77 12 0 35 0 4 547 0 3 463 0 14 283 2 1 374 7 5 731 0 1 685 0 1 725 5 1 255 0 1 578 0 4 551 1 0 46 2 0 49 43 41 35 0 7 18 1 0 93 chain 153521 chr11 135086622 + 125847191 125849255 L1PA10 4194 + 1783 3815 12145 261 0 1 33 78 34 25 9 8 471 19 22 16 21 10 12 4 8 13 0 4 119 1 0 364 0 4 416 0 4 40 0 4 82 0 2 75 1 0 4 chain 513825 chr11 135086622 + 125857358 125865907 L1PA5 6144 + 7 6132 2579 278 7 0 409 0 5 146 8 5 213 12 13 93 9 0 239 1 6 778 1 3 374 0 1 516 0 7 77 1 0 97 0 9 77 5 6 324 0 1 48 0 3 554 0 1 580 2497 0 106 0 51 349 0 1 241 0 5 509 chain 164310 chr11 135086622 + 125862246 125864696 SVA_F 1814 + 10 1814 11467 681 0 1 192 1 0 7 521 0 56 0 15 39 1 0 10 1 0 166 131 0 10 1 0 419 7 1 207 chain 1644 chr11 135086622 + 125863183 125863213 SVA_F 1814 + 962 992 78507 30 chain 6905 chr11 135086622 + 125863219 125863373 SVA_F 1814 + 935 1104 43717 12 1 15 48 0 1 93 chain 3269 chr11 135086622 + 125863373 125863412 SVA_F 1814 + 977 1016 82726 39 chain 714 chr11 135086622 + 125863415 125863449 SVA_F 1814 + 903 937 69668 34 chain 7141 chr11 135086622 + 125863449 125863583 SVA_F 1814 + 888 1037 49031 59 0 15 75 chain 4994 chr11 135086622 + 125863583 125863637 SVA_F 1814 + 1164 1219 66951 50 0 1 4 chain 10963 chr11 135086622 + 125863922 125864050 SVA_F 1814 + 1001 1128 53215 4 1 0 123 chain 28312 chr11 135086622 + 125871008 125871308 AluYa5 310 + 0 299 44393 132 1 0 167 chain 3780 chr11 135086622 + 125876592 125876633 L1PA8 5853 + 5523 5564 92988 41 chain 3381 chr11 135086622 + 125876634 125876678 L1PA8 5853 + 5564 5608 96282 44 chain 19334 chr11 135086622 + 125876680 125876929 L1PA8 5853 + 5608 5853 57194 69 3 2 9 1 0 52 2 1 19 1 0 93 chain 30577 chr11 135086622 + 125930048 125930529 MER1A 529 + 1 507 41495 20 33 58 119 2 1 63 0 1 53 7 6 69 0 3 12 1 0 38 18 17 46 chain 41338 chr11 135086622 + 125933648 125934187 MER41A 554 + 0 554 33768 151 1 5 280 0 1 24 7 0 6 4 21 66 chain 5988 chr11 135086622 + 125975633 125975776 MER5A 189 + 58 189 81130 55 59 47 29 chain 60073 chr11 135086622 + 125985697 125986441 L1PA6 6164 + 5386 6162 26353 440 1 2 62 0 18 95 2 0 11 4 6 19 0 16 92 1 0 7 2 0 8 chain 53646 chr11 135086622 + 126107706 126108390 L1PA7 6471 + 5779 6469 28349 32 20 19 335 9 17 264 1 3 9 3 0 11 chain 15910 chr11 135086622 + 126245054 126245293 7SLRNA 320 + 20 310 61139 40 9 1 24 4 61 95 6 8 61 chain 23469 chr11 135086622 + 126247583 126247867 AluSx3 311 + 6 292 51635 102 1 2 16 0 1 165 chain 38294 chr11 135086622 + 126314339 126314967 L1PB1 5432 + 4815 5422 35844 288 14 11 24 1 0 6 1 0 12 2 0 3 2 0 9 2 0 51 1 0 18 1 0 47 1 0 4 52 47 11 2 0 24 1 0 22 14 15 15 chain 4574 chr11 135086622 + 126315008 126315086 L1PA15 4387 + 4186 4259 87949 20 4 0 11 6 5 37 chain 4718 chr11 135086622 + 126472078 126472236 MER53 195 - 12 162 87151 40 16 15 15 60 53 27 chain 20196 chr11 135086622 + 126617915 126618420 MSTA 426 + 1 387 56143 158 14 10 35 5 0 7 0 7 20 21 20 33 171 55 41 chain 36532 chr11 135086622 + 126813791 126814415 L1PA11 4918 + 4049 4629 37057 264 0 4 76 2 1 13 2 0 67 2 0 17 9 0 16 22 13 10 13 9 15 1 0 13 64 44 18 chain 38877 chr11 135086622 + 126843585 126844128 MER41A 554 + 1 554 35450 60 39 44 233 0 3 56 7 9 148 chain 6454 chr11 135086622 + 126934662 126934746 L1MC1 2226 + 1309 1393 79500 84 chain 60951 chr11 135086622 + 126952767 126953492 L1PA7 6471 + 5744 6468 26126 542 0 1 131 6 7 32 3 0 11 chain 5290 chr11 135086622 + 127060348 127060417 Tigger2b_Pri 1066 + 813 918 84247 12 0 36 57 chain 19941 chr11 135086622 + 127083292 127083552 L1P3 4156 + 915 1175 56467 147 3 4 46 2 1 62 chain 209473 chr11 135086622 + 127088747 127091819 L1PB1 5432 + 2517 5430 9366 70 1 3 346 7 60 737 33 5 291 2 1 189 8 9 55 0 1 205 0 1 15 10 8 37 1 0 75 1 0 343 4 0 15 0 1 119 1 2 9 151 0 24 9 6 14 20 14 48 2 1 12 6 5 43 1 0 15 2 0 6 14 7 17 25 20 24 1 0 22 1 0 12 1 0 11 1 0 10 1 0 5 chain 28778 chr11 135086622 + 127095086 127095521 L1PA16 3655 + 3112 3554 43661 89 1 0 52 16 16 24 2 0 53 21 25 44 0 4 6 0 1 78 0 1 49 chain 3442 chr11 135086622 + 127175341 127175394 MER21C 908 + 38 92 95718 27 4 5 22 chain 15171 chr11 135086622 + 127296972 127297159 THE1B-int 1605 + 0 187 62073 187 chain 16132 chr11 135086622 + 127301069 127301405 L1PB1 5432 + 5121 5424 60847 13 1 0 12 1 0 12 15 9 53 2 1 16 10 9 35 1 0 15 15 2 29 2 0 5 1 0 14 2 0 26 1 0 19 1 0 13 2 1 15 1 0 4 chain 542366 chr11 135086622 + 127363163 127369180 L1PA3long 6157 + 0 6152 1188 152 0 1 624 1 129 184 0 1 157 0 1 1940 1 0 733 2 1 61 0 5 2018 0 1 144 chain 16294 chr11 135086622 + 127394495 127394845 THE1B 368 + 0 341 60630 54 118 114 26 4 0 98 2 1 48 chain 51328 chr11 135086622 + 127396537 127397332 LTR12_ 688 + 7 680 29109 13 5 4 139 18 1 84 1 0 158 103 0 274 chain 3402 chr11 135086622 + 127447497 127447574 MIR 256 + 77 157 96039 33 25 28 19 chain 17903 chr11 135086622 + 127465242 127465623 MER57B2 428 + 0 424 58754 95 56 99 119 67 65 12 0 2 32 chain 26735 chr11 135086622 + 127480048 127480344 AluYd8 298 + 0 291 46632 111 1 0 3 4 0 177 chain 8126 chr11 135086622 + 127499824 127499981 Tigger1 2417 + 7 164 74577 13 8 11 23 2 0 30 19 18 62 chain 27055 chr11 135086622 + 127556872 127557230 L1PA8 5853 + 5502 5853 46187 62 1 0 45 2 0 73 1 0 5 4 3 50 2 1 106 1 0 6 chain 2964 chr11 135086622 + 127798456 127798491 HSMAR1 1287 + 1252 1287 100259 35 chain 186020 chr11 135086622 + 127916432 127918808 L1PA8A 6298 + 3905 6291 10295 63 0 1 21 8 3 151 0 4 69 0 1 603 1 0 522 0 5 121 0 1 17 1 0 70 0 1 12 0 2 56 4 5 28 1 0 469 0 1 54 0 1 105 chain 19913 chr11 135086622 + 127942069 127942308 L1PA7 6471 + 5547 5785 56501 72 2 0 137 0 1 28 chain 26209 chr11 135086622 + 127955556 127955906 THE1B 368 + 0 366 47402 44 0 15 109 1 0 4 2 1 27 0 4 89 1 0 73 chain 322396 chr11 135086622 + 128007466 128012072 L1PA11 4918 + 13 4504 6363 29 2 0 29 11 8 21 0 1 9 6 5 15 11 9 41 1 0 33 9 6 30 8 10 142 2 3 93 14 19 338 2 3 121 0 3 61 6 5 302 1 0 240 0 1 14 1 0 123 3 11 77 10 7 66 12 18 144 5 6 4 1 0 189 0 1 206 6 4 174 10 9 175 0 3 529 2 0 572 146 10 47 22 23 53 15 18 6 3 0 135 1 2 42 0 9 27 12 14 17 1 0 70 1 0 11 1 2 64 2 0 16 0 2 14 chain 445862 chr11 135086622 + 128107858 128113564 L1PA6 6164 + 792 6162 4460 111 0 4 204 1 2 48 0 3 229 5 0 53 1 0 10 0 1 67 12 4 93 0 4 709 46 5 41 0 1 218 0 1 191 0 3 163 1 17 168 0 1 80 0 1 4 1 0 37 0 3 424 6 0 203 0 1 405 0 2 59 0 4 196 9 4 82 1 0 352 7 0 317 1 5 467 308 0 367 3 0 6 chain 9862 chr11 135086622 + 128124406 128124533 L1MB8 1703 + 1433 1563 70698 49 0 3 78 chain 547038 chr11 135086622 + 128140057 128146212 L1PA4 6152 + 7 6152 915 570 1 0 121 14 0 1988 0 1 1669 0 4 1018 1 0 660 0 1 113 chain 15026 chr11 135086622 + 128186028 128186233 L1PA6 6164 + 5037 5242 62234 107 3 2 23 0 2 67 1 0 4 chain 41346 chr11 135086622 + 128186233 128186734 L1PA6 6164 + 5243 5748 33764 75 0 4 426 chain 20126 chr11 135086622 + 128186734 128186992 L1PA6 6164 + 5812 6070 56224 258 chain 114064 chr11 135086622 + 128236907 128238347 LTR12C 1709 + 0 1709 16545 292 5 6 40 10 53 73 4 5 57 0 1 82 2 3 70 3 119 31 6 5 44 0 4 223 1 0 8 4 2 103 3 7 168 0 102 211 chain 20456 chr11 135086622 + 128251513 128251870 THE1B 368 + 0 368 55826 64 0 3 80 88 96 125 chain 20145 chr11 135086622 + 128282706 128283076 L1PB1 5432 + 5085 5427 56195 17 1 0 12 3 0 24 1 0 9 1 0 9 2 0 3 2 0 10 3 1 50 2 1 16 1 0 44 1 0 16 3 0 27 27 22 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 15368 chr11 135086622 + 128398063 128398319 Tigger3a 397 + 58 374 61832 17 15 64 10 1 11 166 13 14 34 chain 174292 chr11 135086622 + 128444398 128446457 L1PA6 6164 + 4096 6159 10884 490 1 0 18 0 1 67 13 14 27 7 4 516 1 0 5 3 4 72 0 5 349 0 1 490 chain 29746 chr11 135086622 + 128450615 128450963 L1PA7 6471 + 6108 6457 42311 171 0 1 177 chain 28305 chr11 135086622 + 128600897 128601201 AluYa5 310 + 0 302 44402 97 2 0 205 chain 22000 chr11 135086622 + 128658457 128658822 MER57A1 433 + 2 375 53835 26 15 18 126 0 4 22 0 11 34 1 2 31 0 1 5 11 0 18 27 26 49 chain 21475 chr11 135086622 + 128780351 128780603 AluSp 311 + 24 290 54541 42 0 14 210 chain 27031 chr11 135086622 + 128826776 128827142 THE1C 375 + 7 375 46223 122 1 2 55 7 8 13 9 10 133 1 0 25 chain 24140 chr11 135086622 + 128983384 128983654 L1PA5 6144 + 5874 6144 50587 270 chain 79743 chr11 135086622 + 128998666 128999716 MER11B 1079 + 0 1049 21682 225 0 5 124 3 6 67 2 1 282 9 8 16 27 17 16 0 2 110 0 1 169 chain 84025 chr11 135086622 + 129128581 129129672 SVA_B 1603 + 0 1226 20801 19 0 32 18 14 1 403 0 116 123 0 3 31 3 0 96 54 14 30 3 6 5 2 0 8 0 1 15 4 0 14 0 41 97 1 2 151 chain 3297 chr11 135086622 + 129129288 129129328 SVA_B 1603 + 1043 1083 89059 40 chain 25783 chr11 135086622 + 129139464 129139830 THE1B 368 + 0 368 48042 94 4 0 9 1 0 66 1 0 4 0 3 4 1 0 4 0 1 7 2 0 28 1 0 86 5 13 49 chain 27174 chr11 135086622 + 129141287 129141629 L1PA6 6164 + 5821 6162 46006 76 6 5 260 chain 513737 chr11 135086622 + 129155777 129162305 L1PA7 6471 + 0 6466 2586 248 17 1 96 0 1 403 10 25 519 6 7 78 0 1 720 4 6 32 1 0 22 1 5 403 5 11 63 14 8 37 0 1 19 4 20 24 1 0 233 1 0 117 16 21 175 4 5 26 6 7 120 0 4 45 1 0 243 17 2 81 3 0 352 32 0 30 0 2 502 0 1 22 61 5 316 1 4 221 0 1 153 3 1 186 0 5 70 0 2 7 0 1 86 0 2 517 0 1 136 6 2 12 chain 43860 chr11 135086622 + 129173064 129173653 L1P3 4156 + 3551 4136 32213 17 0 3 40 8 13 192 0 3 10 12 0 278 2 0 7 2 1 21 chain 543519 chr11 135086622 + 129173931 129179954 L1PA3long 6157 + 2 6157 1106 150 0 1 628 1 129 1086 0 1 273 0 5 421 0 1 1412 4 0 2048 chain 43421 chr11 135086622 + 129186544 129187220 L1MA2 4263 + 3432 4105 32490 75 0 13 64 5 1 41 5 6 14 17 16 146 3 0 14 1 2 33 1 0 101 9 7 93 15 8 39 chain 123256 chr11 135086622 + 129198732 129200290 THE1B-int 1605 + 0 1599 14982 413 1 0 19 0 25 106 0 1 117 0 1 24 0 1 259 5 6 64 0 1 367 1 0 135 8 21 39 chain 17514 chr11 135086622 + 129200296 129200659 THE1B 368 + 0 368 59229 108 32 34 35 73 77 52 7 6 56 chain 100803 chr11 135086622 + 129244494 129245601 L1PA3long 6157 + 5043 6149 18207 264 1 0 842 chain 64133 chr11 135086622 + 129310708 129311511 LTR12 884 + 0 865 25386 55 0 41 170 0 2 72 1 2 35 2 0 47 0 19 96 2 3 323 chain 5769 chr11 135086622 + 129334461 129334532 MSTD 398 + 3 77 82039 34 0 1 24 0 2 13 chain 531548 chr11 135086622 + 129466753 129473487 L1PA7 6471 + 3 6460 1772 397 13 14 264 2 0 323 1 11 330 0 1 129 0 1 141 0 1 475 2 6 544 0 1 742 0 1 314 0 1 823 0 2 36 12 11 7 0 1 89 0 4 949 0 3 20 309 2 52 0 2 760 chain 503352 chr11 135086622 + 129493484 129499586 L1PA6 6164 + 0 6149 3019 212 0 1 34 1 7 162 1 0 32 28 5 116 1 0 107 0 1 128 1 18 264 1 4 163 1 0 202 2 0 5 10 9 863 8 9 840 2 0 7 0 1 467 0 1 35 0 1 1019 0 1 1315 0 45 75 chain 6016 chr11 135086622 + 129548376 129548448 LTR28 1034 + 0 72 81016 72 chain 296869 chr11 135086622 + 129598747 129603298 L1PA8 5853 + 134 5853 6928 19 339 325 45 101 87 5 0 2 13 3 0 11 0 3 10 6 9 37 17 17 12 37 37 13 0 3 372 19 19 584 14 13 256 3 1 198 7 23 49 0 1 461 7 15 145 2 1 43 0 5 206 81 1230 603 0 2 47 0 1 55 0 11 437 5 4 45 2 0 70 1 0 9 1 0 37 17 16 19 1 0 8 0 6 79 chain 27632 chr11 135086622 + 129660214 129660507 AluYd8 298 + 0 293 45418 293 chain 66882 chr11 135086622 + 129660544 129661400 L1PA10 4194 + 3261 4114 24726 102 13 9 315 5 6 253 0 4 126 4 0 38 chain 19981 chr11 135086622 + 129662873 129663202 L1PA13 3608 + 3133 3467 56412 26 5 4 110 2 0 53 10 9 12 8 10 30 1 0 9 2 0 34 1 13 5 2 0 19 chain 57725 chr11 135086622 + 129675021 129677623 L1PA15 4387 + 643 2469 27041 15 5 11 179 2 1 233 1761 980 44 15 0 8 0 15 321 0 1 4 1 0 14 chain 536581 chr11 135086622 + 129712548 129718661 L1PA4 6152 + 2 6143 1528 112 0 1 568 0 3 151 1 2 397 0 1 278 0 12 1236 1 0 366 0 1 385 0 1 840 0 4 634 0 1 309 0 4 318 6 6 511 chain 231117 chr11 135086622 + 129754066 129756921 L1PA7 6471 + 3577 6461 8720 99 2 0 137 0 4 258 6 9 5 1 0 15 0 1 96 0 1 62 1 0 86 1 11 304 1 3 34 1 0 32 0 1 171 0 1 381 0 7 322 1 4 65 12 14 408 2 1 352 chain 24045 chr11 135086622 + 129765075 129765536 L1PB1 5432 + 4954 5383 50739 147 15 13 23 1 0 10 1 0 11 5 1 8 2 0 53 2 1 9 8 7 44 1 0 15 30 17 15 2 0 4 1 0 14 13 11 13 1 0 13 chain 64763 chr11 135086622 + 129782155 129782894 L1PA5 6144 + 5398 6144 25248 590 0 7 149 chain 20484 chr11 135086622 + 129802681 129802975 L1PBa 3878 + 3051 3325 55796 159 32 13 84 1 0 18 chain 45834 chr11 135086622 + 129808891 129809835 L1PB1 5432 + 4629 5410 31136 175 4 11 113 6 9 134 1 6 14 1 0 12 159 11 19 2 1 13 16 11 11 3 1 50 2 1 16 1 0 9 0 1 21 1 2 9 1 0 14 28 16 18 11 8 11 2 0 24 1 0 21 1 0 13 1 0 6 chain 6871 chr11 135086622 + 129980606 129980744 L1MB8 1703 + 1390 1523 78066 30 25 19 24 12 13 47 chain 3881 chr11 135086622 + 130018498 130018541 MER2 342 + 135 178 92280 43 chain 108823 chr11 135086622 + 130021489 130022851 LTR12C 1709 + 0 1709 17207 336 0 43 85 0 1 61 0 1 46 7 30 47 0 278 184 9 6 106 0 4 162 5 6 223 7 6 84 chain 2894 chr11 135086622 + 130038370 130038440 L1MB7 1623 + 1343 1410 100877 21 23 20 26 chain 8888 chr11 135086622 + 130041994 130042208 Tigger3 1187 + 935 1144 72804 44 1 0 28 64 63 13 10 8 38 1 0 15 chain 160017 chr11 135086622 + 130107366 130109209 L1PA5 6144 + 4280 6144 11755 64 0 4 852 0 6 87 1 5 466 4 6 8 0 4 28 0 1 333 chain 196861 chr11 135086622 + 130252625 130254852 L1PA5 6144 + 3539 5762 9816 141 0 4 405 4 0 205 1 0 489 0 2 511 6 0 445 0 1 20 chain 8285 chr11 135086622 + 130257292 130257704 MLT1C 463 + 65 457 74199 59 6 0 14 1 0 6 0 2 15 273 258 38 chain 79795 chr11 135086622 + 130258909 130259939 L1PA7 6471 + 4634 6446 21665 19 10 18 101 0 3 202 4 776 89 1 0 259 17 17 328 chain 114713 chr11 135086622 + 130304797 130306692 L1PB2 3958 + 2262 3835 16429 215 3 0 221 0 2 224 1 0 170 1 0 107 0 10 77 1 3 16 2 0 56 64 46 16 1 4 9 2 0 12 5 1 166 1 0 44 305 0 20 1 0 94 1 0 60 chain 6886 chr11 135086622 + 130346696 130346802 MLT2C2 476 + 0 105 78005 82 6 7 7 2 0 9 chain 7367 chr11 135086622 + 130365477 130365624 MER63B 433 + 43 202 76492 36 7 11 28 16 25 17 2 1 41 chain 27802 chr11 135086622 + 130468483 130468787 AluYk12 309 + 0 304 45179 304 chain 45952 chr11 135086622 + 130559530 130560068 L1PA5 6144 + 5591 6135 31079 71 1 4 11 0 2 408 0 1 47 chain 6063 chr11 135086622 + 130595067 130595142 Tigger3c 601 + 398 503 80859 59 0 30 16 chain 10447 chr11 135086622 + 130730812 130730994 MER30 238 + 37 238 69526 69 9 25 20 1 7 41 21 18 21 chain 4172 chr11 135086622 + 130832733 130832779 MER121 330 + 127 173 90315 46 chain 66808 chr11 135086622 + 130956752 130957486 L1PA3long 6157 + 5424 6157 24745 583 1 0 150 chain 542773 chr11 135086622 + 130984265 130990288 L1PA3long 6157 + 0 6156 1155 152 0 1 52 5 6 565 0 128 540 0 2 238 1 0 312 0 1 2242 0 1 1916 chain 27502 chr11 135086622 + 131050426 131050792 THE1C 375 + 0 363 45581 22 0 1 92 8 5 230 1 0 13 chain 180354 chr11 135086622 + 131115180 131117426 L1PA7 6471 + 4211 6470 10572 152 1 2 4 1 0 305 0 4 130 0 2 259 0 2 268 0 1 235 0 1 32 12 13 12 5 6 45 2 3 294 11 11 145 1 0 142 6 7 184 chain 78472 chr11 135086622 + 131173984 131174837 L1PA2 6032 + 4495 5348 21989 853 chain 46409 chr11 135086622 + 131213269 131213867 MER4A1_ 611 + 0 599 30880 93 33 34 472 chain 101276 chr11 135086622 + 131263150 131264960 L1PB1 5432 + 3592 5098 18155 51 18 0 81 5 8 197 320 0 64 0 55 491 0 17 8 31 0 57 0 2 174 2 9 155 20 0 53 0 2 12 15 14 56 chain 478903 chr11 135086622 + 131312995 131318676 L1PA6 6164 + 437 6162 3658 72 2 1 621 10 16 643 0 12 287 4 5 119 0 2 117 0 2 193 0 6 656 0 1 188 3 7 129 0 4 137 0 1 20 0 10 6 6 0 627 1 0 193 0 4 127 0 1 17 0 1 603 0 1 49 1 0 106 2 0 67 0 2 660 3 0 12 chain 104245 chr11 135086622 + 131507907 131509047 L1PA2 6032 + 4890 6031 17790 282 0 1 858 chain 102597 chr11 135086622 + 131711019 131712142 L1PA3long 6157 + 5035 6157 17994 863 1 0 259 chain 10108 chr11 135086622 + 131728580 131728708 MER85 139 + 0 139 70180 11 0 1 83 0 10 34 chain 3234 chr11 135086622 + 131741769 131741804 tRNA-Tyr-TAC 38 + 0 35 97640 35 chain 106688 chr11 135086622 + 131752684 131753877 L1PA3long 6157 + 4939 6132 17471 116 2 3 598 1 0 476 chain 33014 chr11 135086622 + 131753909 131754282 L1PA4 6152 + 5768 6141 39503 373 chain 36922 chr11 135086622 + 131873048 131873523 L1PA8 5853 + 5380 5849 36794 140 1 2 42 1 0 45 2 0 73 1 0 5 2 1 52 2 1 19 1 0 89 chain 6928 chr11 135086622 + 132057024 132057106 Tigger8 508 + 213 295 77857 82 chain 12827 chr11 135086622 + 132108384 132108638 L1PB1 5432 + 5159 5393 65403 9 2 0 52 2 1 16 1 0 44 1 0 20 23 14 11 9 6 14 2 0 24 1 0 23 chain 10000 chr11 135086622 + 132188146 132188271 MER20 218 + 91 216 70422 125 chain 23737 chr11 135086622 + 132203615 132203932 AluY 311 + 6 303 51217 118 7 0 171 13 0 8 chain 31734 chr11 135086622 + 132207145 132207639 MER1A 529 + 41 524 40549 39 4 0 90 3 0 5 5 14 16 1 0 31 0 2 5 2 0 139 8 0 61 29 26 10 1 0 45 chain 82941 chr11 135086622 + 132319139 132320163 L1P1 4361 + 1 1027 21032 449 22 20 97 0 2 146 0 1 64 0 1 246 chain 426811 chr11 135086622 + 132320173 132325079 L1PA4 6152 + 11 5049 4790 144 0 1 210 0 1 213 1 0 118 7 0 64 8 136 282 28 27 233 1 0 1820 0 4 467 0 1 622 0 4 277 3 6 408 chain 253244 chr11 135086622 + 132367882 132371017 L1PA7 6471 + 3283 6465 8151 10 0 1 88 1 0 98 5 6 16 6 7 14 1 2 101 6 5 218 2 1 331 0 11 386 1 0 303 2 3 101 0 3 212 0 1 381 10 35 7 0 4 70 0 2 765 chain 449703 chr11 135086622 + 132375479 132381075 HERVL-int 5654 + 0 5647 4398 255 0 1 84 1 0 335 0 18 4 17 0 145 0 1 27 0 5 8 0 1 453 7 8 132 0 6 6 14 8 225 1 3 56 0 1 116 0 1 346 6 7 88 7 5 196 3 2 296 1 2 67 1 0 1058 0 2 96 0 1 84 4 3 215 0 4 138 0 3 337 7 18 535 0 6 154 2 12 51 0 4 18 chain 31848 chr11 135086622 + 132381082 132381521 MLT2A1 477 + 0 472 40457 117 1 0 4 0 1 46 5 2 11 0 1 21 0 1 181 4 0 7 7 44 4 0 1 31 chain 470116 chr11 135086622 + 132383419 132388766 L1PA4 6152 + 0 5354 3853 704 1 0 329 0 1 204 1 2 245 0 2 22 0 1 1699 1 0 2089 0 4 52 chain 533329 chr11 135086622 + 132479027 132485092 L1PA3long 6157 + 4 6157 1689 149 11 23 600 0 128 31 0 4 87 0 1 19 6 7 1081 50 0 3 3 0 185 0 4 1411 0 1 622 0 4 1778 14 0 15 chain 119075 chr11 135086622 + 132508859 132510428 THE1A-int 1579 + 0 1574 15684 15 1 3 122 41 42 220 11 6 86 8 12 88 0 2 134 0 4 5 3 0 353 3 1 5 0 2 474 chain 25048 chr11 135086622 + 132510441 132510778 THE1A 353 + 8 351 49193 102 1 0 30 3 1 138 1 0 27 0 10 35 chain 23225 chr11 135086622 + 132521435 132521768 L1PA8 5853 + 5489 5852 52040 75 1 0 44 2 0 9 0 33 28 2 1 13 1 0 48 2 1 19 1 0 70 1 5 17 chain 3777 chr11 135086622 + 132525823 132525865 U6 107 + 26 68 93008 42 chain 3562 chr11 135086622 + 132551105 132551144 LTR8 732 + 641 680 94727 39 chain 5366 chr11 135086622 + 132646095 132646212 L1PB1 5432 + 5308 5417 83872 19 2 0 4 1 0 15 2 0 24 23 21 13 1 0 13 chain 26150 chr11 135086622 + 132688699 132688984 AluYb8 318 + 38 316 47497 80 7 0 198 chain 22590 chr11 135086622 + 132843904 132844265 THE1B 368 + 0 368 53001 44 0 15 117 7 6 26 14 7 72 24 23 39 7 8 11 chain 12159 chr11 135086622 + 132903410 132903577 MER4B 649 + 0 161 66550 92 6 0 69 chain 32799 chr11 135086622 + 133028642 133029209 L1PA17 2846 + 2144 2691 39670 5 0 1 53 3 0 60 0 1 127 2 0 8 9 0 12 3 9 75 31 22 16 1 0 26 46 44 29 1 0 16 2 1 42 chain 18253 chr11 135086622 + 133176490 133176801 MSTA 426 + 60 414 58405 35 0 1 50 23 28 31 3 7 10 18 46 32 1 6 108 chain 7674 chr11 135086622 + 133200787 133200956 L1PA15 4387 + 4168 4326 75694 16 2 1 16 8 4 12 2 1 38 17 14 44 3 1 11 chain 49887 chr11 135086622 + 133236478 133237067 LTR10C 591 + 0 591 29607 510 0 1 4 0 1 75 chain 31744 chr11 135086622 + 133245688 133246122 L1PA8 5853 + 5415 5853 40543 149 1 0 44 3 1 69 13 10 38 0 8 6 2 1 19 1 0 19 0 1 33 0 3 37 chain 17879 chr11 135086622 + 133316383 133316629 L1PA8 5853 + 5598 5853 58787 10 2 0 69 12 25 38 2 1 19 1 0 93 chain 123371 chr11 135086622 + 133328666 133330035 L1PA4 6152 + 3972 5341 14971 912 4 0 397 1 5 55 chain 20775 chr11 135086622 + 133333343 133333712 L1PA14 3548 + 3115 3465 55400 16 2 0 6 1 0 17 0 1 7 5 1 58 1 0 62 0 1 48 12 9 30 12 11 11 1 0 3 1 0 19 1 0 38 6 0 12 chain 4810 chr11 135086622 + 133370999 133371357 L1MA4A 3247 + 2803 3130 86648 15 1 0 8 1 0 13 262 234 33 2 1 23 chain 21014 chr11 135086622 + 133413244 133413478 L1PA2 6032 + 5785 6019 55101 234 chain 3354 chr11 135086622 + 133463270 133463341 L1MB3 1562 + 1433 1501 96560 5 2 0 17 11 10 36 chain 91494 chr11 135086622 + 133493847 133494881 L1PA3long 6157 + 5132 6157 19420 175 2 0 46 6 0 31 1 0 773 chain 3236 chr11 135086622 + 133551271 133551339 L1MD3 1191 + 989 1058 97603 10 2 0 22 6 10 4 1 0 23 chain 29153 chr11 135086622 + 133626774 133627185 LTR7 482 + 0 482 43114 69 8 46 23 0 1 85 0 1 42 2 31 121 16 18 45 chain 304128 chr11 135086622 + 133627187 133631036 HERVH-int 3825 + 0 3824 6740 333 1 0 37 6 10 73 0 1 68 135 66 16 4 14 12 4 1 19 2 22 26 2 1 80 1 0 447 15 0 416 0 1 42 4 31 127 1 0 63 4 3 213 0 1 325 1 0 48 7 5 850 6 0 7 3 9 41 24 25 294 6 11 86 chain 554543 chr11 135086622 + 133640803 133646817 L1PA2 6032 + 2 6021 444 713 0 1 104 0 4 5197 chain 66120 chr11 135086622 + 133673469 133674204 L1PA4 6152 + 5404 6138 24930 280 4 2 352 0 1 99 chain 4209 chr11 135086622 + 133686682 133686732 MER58B 340 + 150 200 90065 50 chain 12254 chr11 135086622 + 133695621 133695894 MLT2B4 540 + 47 326 66364 42 1 0 104 99 106 27 chain 43257 chr11 135086622 + 133737467 133737980 L1PA5 6144 + 5614 6134 32607 358 0 6 11 1 2 143 chain 219640 chr11 135086622 + 133762851 133765274 L1PA3long 6157 + 3732 6156 9052 1681 0 1 570 0 1 4 1 0 167 chain 115721 chr11 135086622 + 133782166 133783649 LTR12C 1709 + 0 1709 16284 244 0 47 66 18 21 4 0 1 31 7 8 51 2 1 175 0 121 67 1 0 48 0 12 50 0 1 8 0 41 113 1 0 6 4 2 96 10 14 481 chain 48354 chr11 135086622 + 133813434 133814121 L1PA16 3655 + 2913 3595 30165 9 1 0 46 0 4 228 0 1 5 15 13 31 16 14 26 2 0 285 7 4 16 chain 66498 chr11 135086622 + 133838942 133839691 L1PA4 6152 + 5402 6152 24824 594 1 2 154 chain 10777 chr11 135086622 + 133870185 133870334 Tigger3a 397 + 159 310 68907 56 9 11 84 chain 26463 chr11 135086622 + 133992705 133993008 L1PA5 6144 + 5832 6135 47035 303 chain 19915 chr11 135086622 + 134080377 134080717 THE1B 368 + 0 356 56499 15 2 0 18 0 10 64 2 3 52 1 0 36 45 55 34 10 8 61 chain 122881 chr11 135086622 + 134080731 134082397 THE1B-int 1605 + 2 1605 15040 23 18 20 387 0 25 371 0 1 39 1 0 324 2 1 105 90 0 103 1 2 202 chain 464725 chr11 135086622 + 134102196 134107483 L1PA5 6144 + 812 6135 4000 43 1 0 579 0 2 870 1 0 71 0 4 196 0 2 198 0 1 392 1 0 75 0 4 260 1 0 165 0 3 398 1 3 269 0 4 432 0 2 357 0 5 128 0 4 16 12 19 658 22 22 141 chain 57410 chr11 135086622 + 134188032 134188826 LTR12 884 + 0 869 27128 25 1 0 37 17 83 36 0 25 131 48 7 30 10 32 161 0 4 298 chain 2718 chr11 135086622 + 134188279 134188327 LTR12 884 + 139 187 66832 48 chain 4088 chr11 135086622 + 134222093 134222143 MER21B 843 + 772 822 90861 50 chain 69720 chr11 135086622 + 134296081 134296836 L1PA3long 6157 + 5386 6142 24067 658 0 1 97 chain 28620 chr11 135086622 + 134298467 134298821 THE1A 353 + 0 353 43917 110 1 0 243 chain 5981 chr11 135086622 + 134448336 134448506 Kanga1b 635 + 78 251 81160 30 0 3 6 3 1 7 1 0 6 3 0 5 61 67 48 chain 57954 chr11 135086622 + 134629397 134630230 L1PA5 6144 + 5384 6144 26979 12 0 3 5 3 0 44 150 77 619 chain 7223 chr11 135086622 + 134630710 134630821 L1MB1 2102 + 1897 2005 76875 19 1 0 23 6 4 62 chain 2980 chr11 135086622 + 134648945 134648981 MLT1A 405 + 138 174 100061 36 chain 90706 chr11 135086622 + 134692663 134693699 L1P1 4361 + 586 1623 19551 447 0 1 589 chain 116632 chr11 135086622 + 134891149 134892710 THE1B-int 1605 + 0 1605 16116 66 10 13 226 14 15 112 10 35 46 1 5 19 7 8 4 1 0 133 1 0 21 0 1 69 2 3 179 6 7 231 0 6 202 0 3 201 chain 3915 chr11 135086622 + 134936187 134936233 MER107 203 + 0 46 92021 46 chain 13250 chr11 135086622 + 134938782 134938972 MER107 203 + 0 203 64712 145 1 6 10 6 14 28 chain 109754 chr11 135086622 + 135013698 135015059 L1PA7 6471 + 2509 3902 17100 131 0 1 457 1 5 37 0 19 131 1 9 185 14 13 52 7 11 113 3 0 229 chain 175230 chr12 133275309 + 41300 43319 SVA_E 1901 + 15 1901 10819 138 1 0 664 1 0 26 1 0 80 3 0 34 126 0 930 1 0 14 chain 9712 chr12 133275309 + 42248 42374 SVA_E 1901 + 1006 1132 40660 126 chain 215109 chr12 133275309 + 60176 63597 L1PB1 5432 + 2355 5426 9171 77 0 1 6 1 0 60 15 20 69 0 1 101 5 6 37 0 1 99 5 1 366 8 6 87 13 12 59 0 1 8 1 0 359 1 0 230 10 8 15 0 3 455 0 6 16 1 2 82 0 1 78 3 0 36 0 1 49 1 0 41 364 0 242 2 0 94 3 43 10 1 0 12 2 0 3 2 0 9 3 1 51 2 1 10 6 5 44 1 0 21 22 11 14 11 8 12 2 0 24 1 0 23 1 0 11 1 0 15 1 0 7 chain 38049 chr12 133275309 + 63944 64407 LTR2 463 + 0 463 36035 207 1 0 153 14 15 88 chain 3561 chr12 133275309 + 168507 168547 MADE1 96 + 2 42 94744 40 chain 35654 chr12 133275309 + 233853 234934 MER41B 635 + 0 635 37629 71 1 0 55 7 3 83 133 34 110 1 2 4 1 0 42 0 1 52 22 23 30 352 4 28 40 44 49 chain 77999 chr12 133275309 + 235373 236465 MER11A 1151 + 0 1151 22102 55 0 99 76 1 0 54 19 10 146 5 6 92 0 1 145 5 6 120 0 26 26 43 0 24 18 0 34 0 1 60 6 7 163 chain 7360 chr12 133275309 + 244239 244366 MSTD 398 + 0 131 76504 34 0 1 33 25 28 35 chain 472518 chr12 133275309 + 297986 303663 L1PA7 6471 + 741 6469 3798 420 1 0 679 9 12 256 0 1 234 2 1 117 0 6 229 1 4 4 0 4 181 0 4 457 0 3 216 0 1 216 0 2 430 3 0 110 0 3 206 0 5 65 0 2 589 0 3 49 1 0 188 0 1 182 0 3 100 4 5 165 0 2 99 0 2 361 0 8 103 chain 516508 chr12 133275309 + 342807 348916 L1PA6 6164 + 0 6162 2444 103 0 1 58 1 2 72 0 2 157 1 0 122 0 2 48 1 0 48 11 26 69 0 1 76 0 17 342 0 2 1186 1 0 263 1 2 111 4 7 131 2 1 335 0 1 5 0 1 11 2 1 304 0 4 287 4 1 152 1 2 415 0 4 138 1 2 112 1 0 880 0 3 552 0 3 96 1 0 4 chain 10290 chr12 133275309 + 405111 405388 L1MB8 1703 + 1430 1658 69823 5 2 0 110 0 1 19 122 74 19 chain 26873 chr12 133275309 + 488977 489329 L1PA8 5853 + 5506 5847 46437 58 1 0 114 2 1 15 7 0 46 2 1 19 1 0 87 chain 11626 chr12 133275309 + 522279 522557 L1MB3 1562 + 1205 1454 67523 35 4 7 11 1 0 48 18 21 24 1 0 24 13 8 38 1 0 4 33 8 5 2 0 16 chain 36429 chr12 133275309 + 577913 578357 LTR2 463 + 0 463 37120 162 0 21 6 1 0 123 2 1 150 chain 20130 chr12 133275309 + 677757 678061 AluSp 311 + 0 297 56220 20 4 9 8 11 0 95 1 0 42 14 14 109 chain 50475 chr12 133275309 + 697924 698510 LTR10C 591 + 0 591 29386 123 0 1 278 0 1 106 1 3 34 0 1 44 chain 3114 chr12 133275309 + 843818 843876 MER5A1 166 + 104 163 98665 13 11 12 34 chain 24422 chr12 133275309 + 928229 928532 AluSp 311 + 0 297 50136 129 6 0 168 chain 6886 chr12 133275309 + 934502 934610 Tigger4b 360 + 222 338 78006 75 8 17 18 1 0 6 chain 5803 chr12 133275309 + 979668 979736 MLT1B 390 + 280 348 81906 68 chain 14876 chr12 133275309 + 1022918 1023096 THE1C 375 + 153 335 62416 28 0 1 19 0 3 131 chain 9669 chr12 133275309 + 1030767 1030886 Tigger3a 397 + 142 291 71121 108 0 30 11 chain 27563 chr12 133275309 + 1080490 1080912 THE1A 353 + 0 351 45498 110 1 0 165 70 0 76 chain 3531 chr12 133275309 + 1207853 1207902 MER53 195 + 0 50 95009 30 1 2 18 chain 5955 chr12 133275309 + 1301020 1301158 L1PB3 3668 + 3503 3624 81255 25 3 1 34 10 6 13 1 0 13 7 4 14 1 0 4 6 0 7 chain 56110 chr12 133275309 + 1316591 1317560 L1PA7 6471 + 5818 6466 27533 282 321 0 197 0 3 159 3 0 7 chain 41133 chr12 133275309 + 1341325 1341821 L1PA6 6164 + 5666 6161 33893 30 0 2 177 0 1 277 4 0 8 chain 43600 chr12 133275309 + 1448733 1449342 THE1C-int 1605 + 975 1605 32383 46 0 2 78 54 53 10 1 2 349 0 18 62 0 1 9 chain 25194 chr12 133275309 + 1513916 1514217 AluYk4 311 + 0 296 48955 64 2 0 58 3 0 174 chain 34149 chr12 133275309 + 1549115 1549601 MSTA-int 1630 + 0 482 38601 12 1 2 61 13 5 326 22 25 51 chain 7431 chr12 133275309 + 1598297 1598429 L1MB2 1706 + 877 1010 76300 69 29 30 34 chain 24422 chr12 133275309 + 1710039 1710429 LTR12F 595 + 65 595 50137 35 0 142 16 71 5 25 0 64 243 chain 26714 chr12 133275309 + 1715696 1716150 LTR12F 595 + 0 595 46668 25 0 1 56 5 148 16 0 23 6 90 0 9 0 64 247 chain 4923 chr12 133275309 + 1721516 1721571 MER4A1 472 + 417 472 86039 55 chain 118590 chr12 133275309 + 1817461 1818799 SVA_D 2077 + 14 2077 15793 11 1 0 3 1 0 512 0 40 159 0 37 22 0 664 603 14 0 12 chain 250852 chr12 133275309 + 1900611 1904522 L1MA3 4352 + 499 4352 8206 135 0 1 131 32 33 27 15 16 20 1 0 6 2 0 8 5 4 200 6 5 11 1 0 4 0 1 9 9 8 21 21 25 36 0 1 6 1 0 30 0 1 26 22 24 240 1 0 103 4 1 19 1 0 14 6 0 84 21 0 10 26 33 46 2 1 63 77 81 216 4 1 113 1 0 10 3 4 180 0 1 4 6 0 540 7 9 5 2 0 256 3 0 65 19 18 7 0 1 430 3 0 59 1 2 72 22 27 40 0 6 7 19 13 27 39 18 66 1 0 69 10 9 24 1 0 6 1 0 29 1 0 11 13 7 17 chain 262738 chr12 133275309 + 1941788 1944964 L1P2 5180 + 1991 5174 7888 327 3 1 7 0 1 658 5 1 36 1 0 492 0 10 162 2 0 484 0 4 93 7 10 531 0 1 14 1 0 264 1 0 49 1 0 38 chain 40625 chr12 133275309 + 1945502 1946044 L1PA7 6471 + 5951 6467 34202 26 5 9 9 25 0 116 1 0 239 0 1 110 5 0 6 chain 53823 chr12 133275309 + 2204354 2204950 L1PA2 6032 + 5430 6032 28276 579 0 6 17 chain 12273 chr12 133275309 + 2293497 2293672 MER30 238 + 39 229 66328 66 10 28 64 3 0 32 chain 8628 chr12 133275309 + 2343445 2343597 MER53 195 + 33 186 73390 47 3 0 6 19 27 12 4 0 61 chain 29349 chr12 133275309 + 2565186 2565496 AluYb8 318 + 0 311 42810 108 0 1 202 chain 19195 chr12 133275309 + 2663256 2663538 L1PB2 3958 + 3493 3770 57353 40 6 5 76 1 0 67 2 1 73 4 2 13 chain 550592 chr12 133275309 + 2699497 2705639 L1PA4 6152 + 1 6151 701 459 6 0 580 1 0 1663 0 1 480 0 1 1552 0 8 360 10 11 188 0 4 843 chain 8164 chr12 133275309 + 2709910 2710019 L1MB2 1706 + 1408 1516 74497 53 2 1 54 chain 84510 chr12 133275309 + 2757769 2759003 L1PB1 5432 + 4224 5427 20709 309 0 2 91 3 0 79 12 14 136 0 1 238 2 1 8 1 2 9 1 0 23 1 0 10 1 0 8 9 6 7 2 0 52 2 1 15 1 0 43 21 17 4 1 0 11 8 0 16 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 14 1 0 5 1 0 4 chain 34947 chr12 133275309 + 2770690 2771078 L1PA7 6471 + 6075 6463 38060 388 chain 11093 chr12 133275309 + 2781178 2781304 HERVK9-int 4720 + 4433 4559 68420 126 chain 4753 chr12 133275309 + 2859974 2860030 HY4 93 + 37 93 86943 56 chain 4754 chr12 133275309 + 2861331 2861417 L1PB1 5432 + 5346 5427 86933 23 8 7 15 1 0 13 1 0 18 2 0 5 chain 24682 chr12 133275309 + 3009156 3009450 AluSq10 312 + 11 303 49760 122 2 0 170 chain 8093 chr12 133275309 + 3047552 3047683 MER1B 344 + 215 344 74654 50 19 17 62 chain 10066 chr12 133275309 + 3067637 3067769 MER4D1 891 + 752 884 70271 28 0 2 6 2 0 96 chain 14996 chr12 133275309 + 3219671 3219859 L1PA7 6471 + 6274 6470 62273 24 2 0 71 0 8 79 0 2 12 chain 4162 chr12 133275309 + 3339404 3339449 MIR 256 + 67 112 90370 45 chain 8239 chr12 133275309 + 3344622 3344817 L1MA8 2339 + 2005 2185 74309 4 1 0 69 0 1 20 3 1 12 61 48 25 chain 21954 chr12 133275309 + 3376654 3376973 THE1B 368 + 0 326 53898 13 2 0 156 1 0 29 41 51 77 chain 189348 chr12 133275309 + 3400022 3402900 L1PA11 4918 + 2028 4578 10146 49 0 2 110 2 0 5 1 3 50 1 0 133 0 3 329 1 2 149 339 22 122 0 1 117 1 0 31 8 18 59 23 13 203 4 0 375 7 9 106 4 7 238 0 5 138 6 1 28 7 11 25 3 2 13 2 0 67 2 0 10 6 5 19 4 0 9 31 22 9 1 2 4 1 0 13 2 0 11 chain 5158 chr12 133275309 + 3465379 3465466 MER101 471 + 379 467 84874 11 14 15 62 chain 5255 chr12 133275309 + 3515319 3515378 MER5A 189 + 14 73 84419 59 chain 47915 chr12 133275309 + 3516656 3517297 LTR71B 605 + 0 605 30324 141 5 0 86 6 5 112 0 1 5 31 0 255 chain 44750 chr12 133275309 + 3524294 3524911 LTR71B 605 + 0 603 31723 135 19 14 47 0 2 144 16 4 66 9 10 181 chain 21129 chr12 133275309 + 3621408 3621675 AluSg7 307 + 37 307 54975 93 1 2 144 0 2 29 chain 29080 chr12 133275309 + 3631962 3632356 MSTA 426 + 7 426 43219 144 2 8 46 4 5 26 2 0 60 1 21 109 chain 36915 chr12 133275309 + 3637418 3637899 LTR10D 510 + 1 503 36800 59 17 27 14 1 0 161 2 0 70 0 14 157 chain 22645 chr12 133275309 + 3648984 3649233 L1PA4 6152 + 5893 6144 52916 56 0 2 193 chain 11862 chr12 133275309 + 3759570 3759737 MSTA 426 + 0 190 67090 107 14 37 46 chain 74166 chr12 133275309 + 3787592 3788507 L1PA7 6471 + 5578 6469 23044 19 19 0 24 1 0 89 1 0 443 1 0 212 3 4 88 3 0 12 chain 6786 chr12 133275309 + 3846338 3846430 L1MA4 2864 + 30 123 78365 5 1 0 24 1 0 13 0 3 48 chain 523862 chr12 133275309 + 3851139 3857278 L1PA6 6164 + 0 6156 2097 509 5 4 322 0 1 452 1 0 135 8 13 123 4 5 164 1 0 230 1 0 373 1 2 851 5 6 9 1 0 23 0 1 321 6 12 140 2 0 661 0 8 349 1 0 103 5 0 129 0 10 45 2 0 166 0 5 143 1 0 272 7 0 357 0 1 211 chain 28253 chr12 133275309 + 3949434 3949853 LOR1b 457 + 18 457 44476 13 1 11 104 0 2 29 5 0 17 42 52 139 0 3 69 chain 14364 chr12 133275309 + 3988059 3988282 L1MA4 2864 + 2378 2600 63092 101 31 30 91 chain 40733 chr12 133275309 + 4018540 4018991 LTR7 482 + 0 482 34132 264 0 31 187 chain 261481 chr12 133275309 + 4018993 4022089 HERVH-int 3825 + 0 3120 7927 212 0 11 309 5 0 38 1 0 10 1 0 19 1 0 5 28 0 15 0 37 42 2 1 57 0 1 6 0 2 14 0 5 439 14 0 218 0 1 243 4 31 440 7 5 394 7 0 180 3 0 351 0 3 31 chain 40580 chr12 133275309 + 4023245 4023694 LTR7 482 + 0 482 34238 91 0 3 160 0 30 198 chain 44748 chr12 133275309 + 4076434 4076967 L1PA10 4194 + 3547 4082 31724 19 4 5 134 0 1 376 chain 29607 chr12 133275309 + 4115136 4115567 MER1A 529 + 92 519 42473 333 48 44 50 chain 21992 chr12 133275309 + 4195003 4195256 AluSp 311 + 5 259 53844 209 0 1 44 chain 6759 chr12 133275309 + 4229435 4229516 LTR61 567 + 464 545 78447 81 chain 9986 chr12 133275309 + 4338562 4338729 L1MA2 4263 + 1198 1372 70452 71 15 22 26 1 0 22 7 8 25 chain 482886 chr12 133275309 + 4341285 4346760 L1PA5 6144 + 0 6139 3576 89 0 525 466 0 3 1295 0 3 205 0 1 241 6 10 406 0 3 437 0 2 288 1 111 258 0 8 940 0 4 366 0 1 477 chain 38508 chr12 133275309 + 4371920 4372339 L1PA2 6032 + 5613 6032 35701 419 chain 15099 chr12 133275309 + 4386515 4386753 L1PA16 3655 + 3407 3619 62157 171 3 0 8 1 0 5 22 5 7 5 0 16 chain 3721 chr12 133275309 + 4389576 4389619 MADE1 96 + 0 43 93466 43 chain 25364 chr12 133275309 + 4404886 4405194 THE1B-int 1605 + 1293 1600 48680 142 1 0 165 chain 26530 chr12 133275309 + 4405199 4405567 THE1B 368 + 0 368 46933 15 2 0 22 0 5 130 8 6 121 16 15 54 chain 17407 chr12 133275309 + 4435137 4435532 MER1B 344 + 0 344 59339 18 54 47 18 55 20 113 4 0 52 28 23 53 chain 18828 chr12 133275309 + 4458621 4458876 AluSq2 311 + 8 261 57744 126 31 29 98 chain 32179 chr12 133275309 + 4501457 4501894 MER1A 529 + 93 528 40210 350 1 0 4 23 28 29 6 0 24 chain 553951 chr12 133275309 + 4508895 4514901 L1PA2 6032 + 0 6032 486 157 0 11 871 0 3 987 0 6 534 0 1 1905 2 0 1007 1 0 116 0 1 285 0 7 141 chain 13490 chr12 133275309 + 4523341 4523487 L1PA5 6144 + 5515 5661 64326 146 chain 42512 chr12 133275309 + 4523487 4523965 L1PA5 6144 + 5662 6140 33055 478 chain 9217 chr12 133275309 + 4531913 4532015 MER83 447 + 0 102 72089 102 chain 12769 chr12 133275309 + 4532017 4532206 MER30 238 + 0 238 65490 15 7 25 39 7 38 121 chain 4097 chr12 133275309 + 4564158 4564268 L1MA4 2864 + 2716 2809 90798 8 9 0 14 36 28 43 chain 7397 chr12 133275309 + 4571721 4571842 MER33 330 + 201 330 76400 82 20 28 19 chain 34404 chr12 133275309 + 4622039 4622631 L1PREC2 3366 + 2475 3033 38424 9 0 5 35 0 1 226 4 0 48 9 8 43 1 0 4 3 0 13 29 21 17 6 1 15 3 1 28 2 0 8 1 0 5 19 8 35 6 4 23 chain 506221 chr12 133275309 + 4671944 4678293 L1PA7 6471 + 0 6470 2923 244 0 10 354 0 2 56 0 2 50 7 8 26 1 0 133 8 7 97 5 6 49 2 0 5 0 2 123 0 10 29 0 4 257 0 43 344 7 0 14 0 16 20 0 1 558 13 6 163 1 2 18 0 2 43 0 4 388 0 4 429 0 7 462 1 3 64 0 15 50 1 2 102 0 2 128 1 0 4 0 1 216 0 1 88 10 6 67 1 0 67 4 0 140 1 0 667 3 9 60 1 0 19 0 1 159 0 9 82 2 0 170 8 3 125 0 9 39 5 6 158 chain 9644 chr12 133275309 + 4750866 4751141 L1PREC2 3366 + 2807 3044 71177 43 1 0 5 3 0 12 43 33 5 3 0 15 8 6 25 4 1 11 22 8 31 10 8 34 chain 3121 chr12 133275309 + 4936559 4936836 MER63C 923 + 43 364 98622 24 220 265 24 1 0 8 chain 52312 chr12 133275309 + 5003656 5004238 L1PA3long 6157 + 5577 6157 28785 246 0 1 318 3 0 15 chain 81586 chr12 133275309 + 5028688 5029618 L1PA5 6144 + 5205 6140 21314 36 0 1 746 4 8 144 chain 3346 chr12 133275309 + 5190352 5190476 MER5A 189 + 5 152 96631 33 69 92 22 chain 139585 chr12 133275309 + 5339991 5341615 L1PA7 6471 + 4835 6470 13129 114 1 0 35 0 1 637 0 8 223 0 3 614 chain 29609 chr12 133275309 + 5366340 5366708 L1PA7 6471 + 6086 6443 42471 109 5 0 229 14 8 11 chain 28798 chr12 133275309 + 5393886 5394189 AluYa5 310 + 0 304 43630 108 0 1 195 chain 4653 chr12 133275309 + 5413046 5413106 MADE1 96 + 1 92 87513 42 0 31 18 chain 74457 chr12 133275309 + 5537016 5537927 LTR5_Hs 974 + 0 920 22975 659 0 1 116 7 7 38 0 8 72 0 1 4 1 0 14 chain 54632 chr12 133275309 + 5544418 5545269 L1PB2 3958 + 25 870 28002 27 42 35 18 4 0 3 1 0 27 1 3 8 0 1 28 6 0 5 1 0 47 7 4 24 0 1 33 4 6 165 1 0 198 8 21 5 3 0 36 0 1 149 chain 62101 chr12 133275309 + 5552064 5553029 L1PB1 5432 + 4462 5404 25843 137 0 1 28 2 0 49 17 22 15 1 0 310 0 3 76 1 4 7 5 0 20 1 0 12 1 0 12 8 4 6 2 0 52 2 1 12 8 7 40 1 0 16 3 0 12 7 1 17 3 1 5 1 0 14 2 0 24 1 0 23 1 0 11 chain 29132 chr12 133275309 + 5583371 5583678 AluYk11 308 + 0 307 43148 307 chain 16262 chr12 133275309 + 5590113 5590322 MER30 238 + 0 236 60661 109 0 30 50 4 1 46 chain 81523 chr12 133275309 + 5640423 5641365 L1PA6 6164 + 5199 6146 21331 119 0 4 166 0 1 657 chain 37780 chr12 133275309 + 5679106 5679635 L1PA11 4918 + 3990 4508 36219 337 6 1 65 2 1 9 6 5 41 1 0 22 8 6 11 1 0 20 chain 282746 chr12 133275309 + 5697478 5700760 L1P1 4361 + 4 3303 7346 291 1 0 269 0 9 872 0 4 680 0 1 65 0 2 979 1 2 24 0 1 100 chain 3215 chr12 133275309 + 5779775 5780038 L1MC4 1079 + 728 973 97755 32 208 190 23 chain 26242 chr12 133275309 + 5818087 5818558 MLT2A1 477 + 0 477 47359 88 0 3 41 2 1 7 0 1 27 9 6 30 9 22 101 2 16 40 79 54 27 0 4 9 chain 437706 chr12 133275309 + 5818565 5826307 HERVL-int 5654 + 8 5654 4608 287 0 1 272 1 196 420 0 1 118 1 2 593 16 0 34 5 6 384 0 1 885 1 11 482 3 0 26 0 1 36 8 11 247 0 16 377 2314 0 581 36 36 162 0 3 18 82 83 41 2 1 20 0 3 45 0 1 245 chain 9312 chr12 133275309 + 5826308 5826421 MLT2A2 560 + 1 114 71886 113 chain 39386 chr12 133275309 + 5837618 5838053 L1P1 4361 + 2887 3322 35092 435 chain 52297 chr12 133275309 + 5876344 5876988 L1PA7 6471 + 5824 6467 28789 314 0 1 43 0 1 125 1 2 148 4 0 9 chain 28185 chr12 133275309 + 5895496 5895921 L1PB2 3958 + 3425 3838 44586 13 2 0 13 4 0 94 5 4 36 0 1 24 0 1 6 1 0 64 1 0 41 5 1 23 10 8 21 1 0 10 1 3 50 chain 28071 chr12 133275309 + 5942804 5943224 L1PB2 3958 + 3407 3811 44764 31 2 0 13 4 0 58 2 0 45 3 0 63 1 0 17 1 0 40 0 1 6 1 0 36 0 1 4 1 0 31 3 1 21 1 0 36 chain 37428 chr12 133275309 + 5960859 5961353 MER1A 529 + 31 521 36460 11 5 0 132 1 0 182 0 1 100 13 14 50 chain 14932 chr12 133275309 + 5994983 5995165 MER30B 195 + 0 190 62349 61 0 1 26 0 7 95 chain 3804 chr12 133275309 + 6003047 6003095 L1M4c 1769 + 367 415 92811 48 chain 76854 chr12 133275309 + 6028383 6029277 L1P2 5180 + 1615 2513 22359 85 0 1 128 1 0 490 4 0 63 0 8 123 chain 15248 chr12 133275309 + 6085659 6085896 L1PA8 5853 + 5637 5853 61982 42 35 16 45 2 1 19 1 0 93 chain 120550 chr12 133275309 + 6099582 6100902 L1PA3long 6157 + 4827 6157 15439 8 0 9 597 0 1 715 chain 19001 chr12 133275309 + 6117576 6117789 AluSp 311 + 43 256 57552 213 chain 24009 chr12 133275309 + 6132973 6133286 LTR12C 1709 + 795 1197 50779 39 0 42 209 0 47 65 chain 4307 chr12 133275309 + 6133286 6133452 LTR12C 1709 + 753 1037 74222 14 16 212 27 84 6 25 chain 112410 chr12 133275309 + 6142013 6143389 LTR12C 1709 + 0 1702 16761 610 1 0 66 0 319 116 1 0 5 3 1 107 0 4 146 0 2 260 6 11 55 chain 19744 chr12 133275309 + 6145624 6145901 LOR1b 457 + 68 341 56735 21 2 0 4 0 1 48 3 1 48 8 7 143 chain 25638 chr12 133275309 + 6147522 6147849 MER41C 542 + 194 542 48260 92 0 1 24 0 21 198 1 0 12 chain 113338 chr12 133275309 + 6159296 6160690 LTR12C 1709 + 0 1709 16626 91 0 3 224 0 1 139 0 6 6 4 0 56 8 7 156 0 279 148 4 2 106 0 4 113 1 30 131 1 0 125 1 0 43 0 2 37 chain 9540 chr12 133275309 + 6162449 6162584 MER85 139 + 4 139 71391 92 8 9 5 1 0 29 chain 2970 chr12 133275309 + 6167482 6167516 MER58C 217 + 66 100 100200 34 chain 4667 chr12 133275309 + 6297369 6297425 MER41D 557 + 6 62 87453 56 chain 14664 chr12 133275309 + 6298885 6299149 L1PB1 5432 + 5169 5422 62715 51 2 1 15 1 0 43 2 1 16 3 0 15 8 0 9 4 12 14 2 0 24 6 5 18 1 0 11 1 0 18 chain 29375 chr12 133275309 + 6466828 6467180 THE1A 353 + 0 353 42776 84 0 1 268 chain 85116 chr12 133275309 + 6467182 6468239 THE1A-int 1579 + 2 1159 20600 72 1 0 296 18 119 73 1 2 4 1 0 591 chain 4043 chr12 133275309 + 6589826 6589894 L1MC4a 1092 + 741 807 91135 13 2 1 20 1 0 32 chain 109314 chr12 133275309 + 6708122 6709483 LTR12C 1709 + 0 1709 17138 190 4 0 89 1 28 258 0 2 6 7 6 174 0 2 43 6 322 104 0 4 117 0 2 362 chain 13616 chr12 133275309 + 6714634 6714808 LTR3B_ 500 + 302 481 64145 16 0 1 77 6 10 75 chain 117377 chr12 133275309 + 6715852 6717297 LTR12C 1709 + 0 1709 15987 104 5 4 201 0 1 4 1 0 206 0 1 314 0 161 115 1 0 5 3 1 107 0 4 205 0 102 174 chain 57206 chr12 133275309 + 6741888 6742530 LTR13 1007 + 369 1007 27193 336 5 1 301 chain 3899 chr12 133275309 + 6841961 6842069 MER104 178 + 13 122 92137 43 50 51 15 chain 3588 chr12 133275309 + 6943816 6943878 U7 62 + 1 62 94525 30 13 12 19 chain 125458 chr12 133275309 + 7037242 7038779 LTR12C 1709 + 0 1709 14635 265 1 2 35 8 12 385 0 159 253 1 0 6 2 0 107 0 4 129 10 17 335 chain 234094 chr12 133275309 + 7182954 7185869 HERV17-int 4347 + 13 2906 8635 13 2 1 48 1 0 37 2 0 27 1 0 68 34 29 383 14 14 28 0 1 89 0 3 593 2 0 15 0 1 105 1 2 60 23 35 156 4 0 20 1 3 403 11 12 75 34 7 665 chain 24773 chr12 133275309 + 7186205 7186533 LTR17 781 + 0 326 49628 59 19 18 79 1 0 170 chain 157486 chr12 133275309 + 7212990 7214726 L1PA3long 6157 + 4409 6157 11916 326 3 0 144 0 4 427 0 4 373 0 4 181 0 3 282 chain 39786 chr12 133275309 + 7248907 7249451 LTR66 600 + 0 600 34831 128 1 13 74 9 24 174 3 1 30 1 18 26 1 17 48 2 0 47 chain 532140 chr12 133275309 + 7251131 7257263 L1PA2 6032 + 3 6032 1742 151 1 0 43 0 1 58 1 0 67 0 1 391 0 1 51 139 11 128 0 17 1056 0 1 52 0 1 119 1 0 3030 0 5 108 0 1 736 chain 415194 chr12 133275309 + 7283270 7288549 L1PA7 6471 + 15 6467 4954 315 3 0 5 8 11 47 14 15 493 1 2 653 10 11 380 1 2 86 1 0 601 13 0 59 0 1 636 2 1 170 1 0 44 0 1 180 0 2 99 1 0 209 32 18 198 0 11 10 2 4 23 9 12 74 4 5 32 4 8 12 0 1171 205 0 1 106 0 1 66 0 2 470 chain 517540 chr12 133275309 + 7330837 7336666 L1PA4 6152 + 38 6149 2396 569 0 2 1642 36 330 601 0 1 1741 1 0 111 15 0 265 0 1 848 chain 132734 chr12 133275309 + 7336677 7338313 L1PA7 6471 + 4804 6459 13759 76 10 23 52 1 0 274 0 1 35 3 4 341 12 11 90 0 3 317 0 2 331 4 5 90 chain 44854 chr12 133275309 + 7342101 7342612 MER9a3 513 + 0 513 31664 212 0 1 233 0 1 66 chain 13929 chr12 133275309 + 7373954 7374141 MER107 203 + 0 197 63704 88 0 1 59 5 0 13 0 14 22 chain 47183 chr12 133275309 + 7379884 7380775 L1PB1 5432 + 4709 5427 30578 110 5 6 50 0 1 24 0 2 196 138 1 15 7 0 23 1 0 10 1 0 11 8 4 6 2 0 51 1 0 18 1 0 5 2 1 37 1 0 16 2 0 6 23 13 12 2 0 5 1 0 14 2 0 24 1 0 21 1 0 31 2 0 5 chain 382868 chr12 133275309 + 7391046 7395601 L1PA6 6164 + 823 6162 5431 414 1 0 171 1 798 50 5 7 49 13 14 864 0 1 80 0 4 168 1 0 164 16 13 5 0 3 573 0 1 166 0 2 309 29 5 120 0 2 38 3 5 5 2 0 1308 chain 7569 chr12 133275309 + 7421773 7421875 L1PB1 5432 + 5179 5279 75932 40 3 2 15 1 0 43 chain 284435 chr12 133275309 + 7422795 7426456 L1PA8 5853 + 2157 5853 7305 21 0 1 264 0 1 78 6 5 264 1 2 76 8 8 459 1 0 47 4 5 93 0 2 171 9 0 338 0 2 447 0 4 6 9 7 427 5 8 113 0 1 40 24 27 73 0 1 70 0 31 29 0 2 76 0 1 207 1 0 44 2 0 70 17 15 47 2 1 19 2 1 11 0 1 80 chain 3374 chr12 133275309 + 7427357 7427410 L1M3 994 + 266 318 96350 28 5 4 20 chain 17003 chr12 133275309 + 7431549 7431763 L1PA6 6164 + 5946 6161 59800 103 5 6 106 chain 59921 chr12 133275309 + 7465301 7466036 L1PA8A 6298 + 5538 6291 26395 32 0 3 122 4 19 577 chain 45109 chr12 133275309 + 7468752 7469337 L1PA8 5853 + 5276 5853 31522 288 1 0 46 2 0 68 2 1 13 8 7 33 11 9 19 1 0 93 chain 5917 chr12 133275309 + 7470435 7470536 L1MA3 4352 + 4224 4317 81410 11 4 0 25 2 0 22 1 0 6 2 1 28 chain 463373 chr12 133275309 + 7471984 7477758 L1PA8 5853 + 111 5853 4040 124 1 0 67 12 0 374 1 2 261 0 1 492 0 1 438 1 0 81 5 6 69 4 0 52 2 1 401 0 4 402 0 1 333 18 6 163 1 0 129 0 1 367 22 24 532 0 1 387 1 0 172 4 0 6 0 3 382 0 2 168 1 0 44 2 0 78 4 3 10 0 1 28 7 1 11 2 1 18 2 1 88 2 0 5 chain 49286 chr12 133275309 + 7495647 7496242 L1PA8 5853 + 5016 5608 29836 544 1 0 29 3 1 18 chain 6320 chr12 133275309 + 7496244 7496314 L1PA8 5853 + 5608 5678 79927 70 chain 12156 chr12 133275309 + 7496328 7496492 L1PA8 5853 + 5690 5853 66558 70 2 1 92 chain 32554 chr12 133275309 + 7516242 7516619 L1PA3long 6157 + 5767 6144 39908 233 2 0 6 4 6 132 chain 26546 chr12 133275309 + 7528218 7528569 THE1A 353 + 2 353 46902 102 11 10 61 0 1 177 chain 389543 chr12 133275309 + 7528960 7533670 L1P2 5180 + 408 5178 5328 101 2 1 5 1 0 14 0 1 257 1 0 6 1 0 140 0 25 54 1 2 13 0 1 158 3 10 155 15 16 241 0 1 65 0 1 443 0 24 177 1 0 907 0 2 229 0 1 232 3 0 165 0 12 45 6 0 331 1 0 847 1 0 35 1 2 8 1 0 39 1 0 4 chain 94758 chr12 133275309 + 7534189 7535468 THE1A-int 1579 + 371 1577 18937 59 1 0 4 1 2 66 1 4 6 3 0 111 0 1 736 78 3 31 0 1 182 chain 27145 chr12 133275309 + 7535470 7535824 THE1A 353 + 0 353 46055 110 1 0 92 1 0 70 0 1 80 chain 495698 chr12 133275309 + 7543634 7550082 L1PA6 6164 + 0 6160 3278 204 0 1 244 8 0 117 0 3 218 0 17 42 0 1 215 12 12 487 12 7 112 0 1 638 0 6 9 11 4 754 309 0 24 1 0 4 0 1 119 6 10 29 0 2 149 0 1 263 1 0 674 0 2 29 3 1 234 12 9 452 1 0 4 0 1 63 0 5 74 0 1 651 0 1 256 0 2 7 chain 401263 chr12 133275309 + 7550835 7555334 L1PA4 6152 + 1642 6146 5136 1185 2 1 806 3 0 334 0 4 71 0 1 1260 0 4 838 chain 378901 chr12 133275309 + 7560659 7565410 L1PA5 6144 + 1704 6144 5505 65 13 14 58 0 1 530 2 1 451 320 0 246 0 1 123 0 1 7 3 1 16 6 10 178 1 0 16 1 0 920 0 8 1630 1 6 8 5 0 137 3 1 11 chain 27908 chr12 133275309 + 7565525 7565875 L1PA8A 6298 + 5937 6289 45020 18 0 1 268 0 1 64 chain 35939 chr12 133275309 + 7579843 7580303 MER11A 1151 + 0 478 37447 77 0 8 136 8 7 66 0 11 173 chain 496648 chr12 133275309 + 7593929 7600341 L1PA7 6471 + 1 6466 3243 133 30 38 55 29 39 139 15 13 35 0 1 19 2 1 42 1 2 59 3 0 16 7 8 651 13 32 740 0 1 329 0 1 278 4 5 181 2 0 51 2 3 16 0 4 223 7 6 189 6 7 166 3 2 59 1 5 21 0 3 80 0 3 34 0 12 131 0 2 431 0 1 681 1 0 121 5 0 551 1 0 82 0 2 5 2 0 600 1 0 114 5 6 28 4 0 8 chain 5116 chr12 133275309 + 7616061 7616136 MLT2A1 477 + 375 477 85078 7 0 2 11 3 28 54 chain 32000 chr12 133275309 + 7623440 7623884 LTR12F 595 + 0 584 40343 31 0 1 71 0 1 31 0 4 38 24 96 14 0 64 39 1 0 36 1 0 158 chain 102983 chr12 133275309 + 7639657 7641018 LTR12C 1709 + 0 1709 17952 260 0 1 175 0 1 129 17 34 70 0 280 102 0 1 59 1 0 4 4 2 106 0 4 21 5 0 98 47 97 124 0 3 5 5 4 129 chain 4714 chr12 133275309 + 7648491 7648544 LTR56 451 + 208 261 87177 53 chain 47870 chr12 133275309 + 7730941 7731509 LTR19B 566 + 0 566 30338 506 12 10 50 chain 3138 chr12 133275309 + 7745732 7745765 MLT1A 405 + 361 394 98481 33 chain 3598 chr12 133275309 + 7759533 7759572 tRNA-Thr-ACA 39 + 0 39 94447 39 chain 23512 chr12 133275309 + 7764192 7764482 AluSq10 312 + 0 288 51572 8 1 0 260 3 2 18 chain 5757 chr12 133275309 + 7827993 7828058 MER41A 554 + 401 466 82100 65 chain 86123 chr12 133275309 + 7862352 7863432 LTR12C 1709 + 350 1709 20410 111 1 0 28 1 2 159 0 278 180 12 9 107 0 4 481 chain 24722 chr12 133275309 + 7866251 7867561 Tigger1 2417 + 645 1833 49692 51 6 16 44 957 825 252 chain 23828 chr12 133275309 + 7878706 7879005 AluSc5 308 + 10 308 51056 247 1 0 51 chain 105349 chr12 133275309 + 7881097 7882474 LTR12C 1709 + 0 1709 17637 168 0 1 34 1 2 74 4 0 185 7 4 16 0 9 33 0 1 133 0 278 138 1 48 100 0 4 94 0 1 178 2 0 123 2 1 84 chain 5183 chr12 133275309 + 7975237 7975303 MER5A1 166 + 3 69 84760 66 chain 3623 chr12 133275309 + 7992684 7992747 MER53 195 + 0 61 94245 20 11 9 32 chain 374081 chr12 133275309 + 7996847 8004689 HERVL-int 5654 + 925 5654 5584 208 0 1 263 344 0 206 4 8 267 313 0 379 0 1 414 336 4 224 760 0 180 0 3 27 0 11 618 0 7 183 6 8 64 28 35 331 3 7 138 479 0 244 7 1 121 3 0 8 0 3 30 0 5 30 1 4 86 3 0 183 1 0 66 312 2 69 0 1 47 314 0 18 0 1 140 310 9 74 chain 29131 chr12 133275309 + 8004689 8005194 MLT2A1 477 + 0 477 43150 48 0 2 88 0 1 22 24 26 194 89 57 19 1 0 20 chain 4054 chr12 133275309 + 8006648 8006698 Tigger1 2417 + 712 762 91058 50 chain 33489 chr12 133275309 + 8009275 8009728 Tigger1 2417 + 1576 2027 39096 128 10 7 122 6 7 187 chain 23789 chr12 133275309 + 8047180 8047462 AluSp 311 + 10 295 51124 81 0 3 201 chain 38892 chr12 133275309 + 8072994 8073461 LTR2 463 + 0 463 35437 235 4 5 172 5 0 51 chain 6734 chr12 133275309 + 8144412 8144496 L1M2a 2583 + 1891 1975 78526 84 chain 4631 chr12 133275309 + 8145512 8145582 L1PA16 3655 + 3433 3505 87639 38 3 5 29 chain 156094 chr12 133275309 + 8146782 8148946 L1PA10 4194 + 237 2379 11997 4 1 0 9 1 0 18 5 3 15 1 0 7 39 14 6 1 0 17 8 6 17 1 0 10 2 1 6 1 0 10 1 0 15 7 0 8 1 0 6 0 1 7 1 0 67 2 0 33 0 10 149 0 3 1233 0 1 106 6 9 191 3 7 20 2 6 127 chain 166939 chr12 133275309 + 8183375 8185367 SVA_D 2077 + 0 2077 11276 53 0 2 49 0 27 579 0 40 11 0 40 107 2 0 8 2 38 76 1 0 6 35 10 6 1 0 34 1 0 288 39 14 13 4 0 658 1 0 18 chain 2910 chr12 133275309 + 8184269 8184304 SVA_D 2077 + 1137 1172 31886 35 chain 3242 chr12 133275309 + 8184634 8184673 SVA_D 2077 + 1472 1511 31886 39 chain 91319 chr12 133275309 + 8220178 8221207 LTR5A 1029 + 0 1029 19448 59 0 2 89 1 0 621 3 1 77 0 1 179 chain 4826 chr12 133275309 + 8247076 8247193 MLT1C 463 + 63 167 86556 47 49 36 21 chain 30444 chr12 133275309 + 8315527 8315937 MER4A1 472 + 35 449 41631 65 0 2 124 24 26 197 chain 68854 chr12 133275309 + 8328264 8329343 MER11A 1151 + 0 1144 24247 76 10 18 14 0 2 33 1 89 62 4 0 135 14 15 94 0 1 145 5 6 107 50 0 29 1 35 22 18 0 37 0 1 20 7 6 34 13 15 148 chain 19474 chr12 133275309 + 8380036 8380296 L1PA8 5853 + 5586 5842 57061 20 7 5 74 1 0 55 2 1 9 0 1 9 1 0 82 chain 11956 chr12 133275309 + 8383256 8383416 L1MA8 2339 + 1931 2088 66907 23 2 0 55 1 0 79 chain 94469 chr12 133275309 + 8404094 8405484 LTR12C 1709 + 2 1709 18969 258 1 2 38 0 1 37 0 43 70 15 18 181 0 278 182 1 0 6 4 2 100 1 0 6 11 4 180 0 106 27 1 0 17 102 0 60 31 30 61 chain 2005 chr12 133275309 + 8405245 8405285 LTR12C 1709 + 1602 1643 85595 4 0 1 36 chain 15408 chr12 133275309 + 8454420 8454821 L1PB1 5432 + 5046 5413 61776 6 1 0 51 63 55 9 2 0 53 2 1 31 16 15 13 1 0 16 1 0 4 2 0 13 40 28 5 2 0 24 1 0 21 1 0 13 1 0 9 chain 81000 chr12 133275309 + 8461931 8462899 LTR5_Hs 974 + 0 974 21439 285 0 1 533 8 15 31 8 6 103 chain 4628 chr12 133275309 + 8484752 8484805 U6 107 + 7 60 87653 53 chain 58666 chr12 133275309 + 8486459 8487160 L1PA5 6144 + 5432 6142 26768 254 0 9 447 chain 26493 chr12 133275309 + 8494907 8495318 LTR7B 505 + 0 495 46992 105 0 10 56 19 88 36 36 1 15 0 41 89 14 13 41 chain 64517 chr12 133275309 + 8495617 8496484 L1P3 4156 + 8 874 25307 51 0 3 171 34 33 16 2 0 37 4 3 12 3 1 73 1 0 184 0 4 79 5 4 195 chain 86456 chr12 133275309 + 8537685 8538696 LTR13 1007 + 0 1007 20333 360 9 5 584 2 0 5 8 10 43 chain 14724 chr12 133275309 + 8565451 8565634 HERVK22-int 3844 + 3662 3844 62637 87 2 1 94 chain 86971 chr12 133275309 + 8584353 8585356 LTR13 1007 + 0 1005 20235 426 7 0 14 0 1 117 11 19 428 chain 90149 chr12 133275309 + 8624320 8625515 SVA_D 2077 + 0 1335 19657 36 1 12 11 13 0 149 3 1 282 2 1 83 116 0 29 0 40 194 0 223 25 3 0 214 0 1 34 chain 7582 chr12 133275309 + 8624931 8625016 SVA_D 2077 + 646 731 71957 85 chain 3955 chr12 133275309 + 8625532 8625582 SVA_E 1901 + 923 974 41832 35 1 2 14 chain 100864 chr12 133275309 + 8625582 8626785 SVA_E 1901 + 804 1901 18200 8 1 0 5 1 0 110 3 0 31 2 1 136 1 0 46 99 0 760 chain 7220 chr12 133275309 + 8625933 8626025 SVA_E 1901 + 923 1015 36022 92 chain 108226 chr12 133275309 + 8630699 8632018 L1PA8 5853 + 4533 5853 17286 124 1 0 231 0 2 116 1 0 3 2 0 75 0 2 83 8 11 340 0 1 43 1 0 15 0 4 27 2 0 69 1 0 14 1 0 47 2 1 19 1 0 93 chain 77952 chr12 133275309 + 8635660 8636609 LTR5_Hs 974 + 0 974 22110 8 0 4 273 0 1 123 7 0 48 1 5 194 0 1 119 7 7 47 0 22 122 chain 17597 chr12 133275309 + 8680458 8680678 MER41A 554 + 334 554 59126 220 chain 132963 chr12 133275309 + 8787083 8788668 LTR12C 1709 + 0 1709 13741 575 3 4 97 18 137 24 1 0 275 1 0 4 4 2 12 0 4 90 0 4 481 chain 132485 chr12 133275309 + 8794542 8796127 LTR12C 1709 + 0 1709 13784 30 0 2 434 2 0 109 3 4 97 18 137 24 1 0 275 1 0 4 4 2 12 0 4 90 0 4 481 chain 117270 chr12 133275309 + 8799985 8801365 L1PA5 6144 + 4772 6141 16006 280 0 1 164 29 14 579 0 2 181 1 2 146 chain 31424 chr12 133275309 + 8801365 8801732 L1PA6 6164 + 5782 6149 40796 367 chain 20591 chr12 133275309 + 8804878 8805281 LTR7 482 + 0 482 55654 47 22 117 19 57 6 35 8 40 22 5 6 127 12 14 49 chain 289031 chr12 133275309 + 8805283 8808959 HERVH-int 3825 + 0 3825 7161 212 0 11 110 1 0 78 7 8 111 1 0 11 1 0 4 0 1 24 1 0 10 1 0 9 4 0 14 7 1 14 1 0 13 26 0 25 22 0 58 42 0 65 1 0 444 15 0 179 2 0 283 4 31 124 0 1 174 0 10 109 0 3 151 0 2 196 0 3 580 10 12 39 1 211 267 0 2 225 chain 1846 chr12 133275309 + 8806048 8806077 HERVH-int 3825 + 673 702 81668 29 chain 28224 chr12 133275309 + 8810169 8810576 LTR7 482 + 0 482 44522 66 13 51 106 4 5 30 0 32 97 0 2 30 12 14 49 chain 20481 chr12 133275309 + 8877315 8877672 L1PA17 2846 + 2337 2682 55800 118 8 10 34 4 0 18 5 0 18 8 7 27 1 2 21 2 0 8 5 4 27 3 1 50 chain 20702 chr12 133275309 + 8887303 8887607 HERV1_LTRe 372 + 8 284 55497 6 1 0 17 11 0 24 2 0 33 1 0 75 13 0 121 chain 9802 chr12 133275309 + 8891305 8891486 L1PB1 5432 + 5261 5420 70812 20 2 1 14 14 1 30 2 0 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 16 chain 24168 chr12 133275309 + 8908997 8909294 AluSp 311 + 8 303 50546 16 4 2 277 chain 200886 chr12 133275309 + 8964743 8967357 L1PA4 6152 + 3571 6151 9692 236 26 0 1497 0 4 823 14 4 11 2 0 5 chain 22641 chr12 133275309 + 8986709 8987113 MSTA 426 + 0 426 52920 94 13 14 21 1 0 5 34 40 31 3 4 27 9 14 20 1 3 23 0 5 12 2 5 108 chain 22939 chr12 133275309 + 9005089 9005361 L1PA7 6471 + 6195 6468 52462 106 0 1 166 chain 63908 chr12 133275309 + 9018737 9019608 L1MA3 4352 + 3035 3918 25429 12 2 0 9 1 3 17 0 1 5 1 0 165 0 1 18 0 7 108 1 0 143 4 9 329 1 0 37 0 1 18 chain 36223 chr12 133275309 + 9035183 9035604 L1PA7 6471 + 6046 6470 37255 278 1 0 131 0 4 11 chain 13148 chr12 133275309 + 9035606 9035866 L1PA15 4387 + 4121 4366 64855 9 1 0 54 2 1 22 5 1 9 1 0 39 17 14 43 2 0 17 10 8 18 1 0 10 chain 4662 chr12 133275309 + 9036162 9036222 Tigger3b 1229 + 706 766 87473 60 chain 3425 chr12 133275309 + 9051305 9051436 MER52C 1267 + 881 971 95859 18 17 3 12 54 27 30 chain 27918 chr12 133275309 + 9083089 9083400 L1PA5 6144 + 5833 6144 45002 311 chain 9517 chr12 133275309 + 9100749 9101052 L1PB1 5432 + 5197 5427 71438 23 2 1 14 46 1 45 1 0 9 9 6 12 8 0 15 15 12 11 2 0 23 28 22 13 1 0 14 1 0 4 2 0 5 chain 18050 chr12 133275309 + 9159437 9159876 MSTC 436 + 26 436 58613 120 20 44 29 117 65 28 46 45 79 chain 338781 chr12 133275309 + 9171374 9175891 L1PA11 4918 + 42 4578 6091 33 61 55 38 6 12 28 3 0 6 11 24 848 1 2 36 1 9 120 4 1 104 0 9 48 0 1 282 0 1 4 2 1 109 1 2 380 2 1 5 0 1 4 1 0 34 1 0 7 2 0 45 6 5 31 0 1 299 0 1 392 0 6 213 4 15 553 6 7 102 1 0 411 6 7 57 3 2 13 2 0 68 2 0 13 5 4 16 45 31 15 1 0 13 2 0 11 chain 35837 chr12 133275309 + 9186599 9187010 L1PA7 6471 + 6058 6468 37505 255 0 1 145 2 0 9 chain 17253 chr12 133275309 + 9217847 9218175 L1PB1 5432 + 5030 5332 59518 73 1 2 9 1 0 20 1 0 12 1 0 12 5 1 9 2 0 52 2 1 9 7 6 45 1 0 15 25 12 19 2 0 5 chain 75304 chr12 133275309 + 9219155 9220299 L1PA15 4387 + 3204 4348 22767 223 0 2 135 1 2 175 4 7 62 5 0 21 4 0 59 2 0 41 2 1 62 17 38 72 1 0 21 6 5 55 1 0 17 4 0 5 0 3 7 1 0 47 9 6 46 20 13 19 chain 232051 chr12 133275309 + 9249541 9252685 L1PA11 4918 + 1244 4500 8690 96 1 0 5 20 21 107 0 1 220 24 16 103 4 1 44 0 1 337 0 1 27 0 114 206 2 5 366 1 2 63 0 1 404 0 2 121 10 11 25 0 6 6 7 1 428 1 0 135 13 13 26 1 0 44 3 14 110 1 0 1 4 0 57 10 9 10 5 2 7 0 1 61 2 0 12 3 2 11 chain 39118 chr12 133275309 + 9392178 9392649 LTR15 485 + 0 475 35273 150 0 2 125 0 4 68 3 4 86 4 0 17 0 1 18 chain 11577 chr12 133275309 + 9406304 9406453 HERVE-int 4064 + 2118 2264 67613 93 3 0 53 chain 51138 chr12 133275309 + 9407304 9407906 HERVE-int 4064 + 2118 2717 29185 93 3 0 506 chain 22275 chr12 133275309 + 9451699 9451959 AluY 311 + 50 304 53440 76 6 0 178 chain 10494 chr12 133275309 + 9475812 9475944 L1PB1 5432 + 3038 3170 69426 132 chain 32680 chr12 133275309 + 9481383 9481799 L1PA5 6144 + 5729 6144 39780 253 7 9 6 1 0 138 2 0 9 chain 120181 chr12 133275309 + 9495731 9497154 L1PA7 6471 + 5047 6468 15510 1273 0 1 133 3 0 14 chain 20327 chr12 133275309 + 9544620 9544851 L1PA3long 6157 + 5910 6141 55976 231 chain 3578 chr12 133275309 + 9577094 9577174 MLT1C 463 + 63 137 94601 39 28 22 13 chain 274279 chr12 133275309 + 9579440 9582450 L1PA2 6032 + 3007 6029 7596 134 0 1 4 11 14 100 1 0 1422 0 5 495 0 4 843 chain 73949 chr12 133275309 + 9600464 9601432 LTR5_Hs 974 + 0 974 23106 173 7 6 110 0 1 180 0 1 185 1 0 115 0 1 47 8 15 19 20 18 103 chain 395939 chr12 133275309 + 9610356 9615106 L1P2 5180 + 2 4797 5217 136 4 15 94 1 0 261 1 0 7 1 0 163 1 2 107 1 0 6 1 0 134 0 25 255 0 1 375 0 3 275 4 0 388 5 6 212 2 1 345 0 4 26 0 10 320 1 0 1624 chain 22313 chr12 133275309 + 9645124 9645474 THE1B 368 + 0 366 53391 44 0 15 48 0 1 47 29 27 18 7 9 84 1 0 13 3 4 56 chain 45052 chr12 133275309 + 9697096 9697609 MER9a2 513 + 0 513 31553 513 chain 127967 chr12 133275309 + 9707825 9709787 HUERS-P2-int 2744 + 36 1969 14281 7 0 3 8 1 0 32 2 0 4 1 0 30 78 70 36 131 109 44 9 0 13 1 0 5 0 1 35 1 0 8 2 0 13 12 19 250 0 2 12 14 12 156 5 9 10 13 7 29 8 9 42 2 6 671 0 4 277 chain 2884 chr12 133275309 + 9777094 9777125 LTR49 580 + 478 509 100963 31 chain 33040 chr12 133275309 + 9778344 9778742 MLT2A2 560 + 0 399 39485 266 0 1 132 chain 113274 chr12 133275309 + 9801981 9803371 L1PA8 5853 + 3337 4755 16637 348 4 5 282 8 34 203 0 1 545 chain 6503 chr12 133275309 + 9902572 9902640 LTR12C 1709 + 1293 1361 79336 68 chain 121511 chr12 133275309 + 9914242 9915867 L1PA8 5853 + 4224 5853 15262 112 1 0 463 14 20 187 1 8 80 2 0 379 2 1 90 4 3 41 2 0 70 0 15 6 15 0 44 1 0 17 8 7 86 chain 64876 chr12 133275309 + 9923169 9924021 L1PA7 6471 + 5547 6366 25221 74 0 3 48 0 1 623 65 28 42 chain 5858 chr12 133275309 + 9950304 9950371 L1MB3 1562 + 1226 1293 81660 67 chain 164444 chr12 133275309 + 9952213 9954222 SVA_F 1814 + 10 1814 11460 926 0 1 11 3 18 135 49 0 86 179 0 574 0 1 36 0 6 10 chain 2508 chr12 133275309 + 9953308 9953337 SVA_F 1814 + 1122 1150 73923 10 1 0 18 chain 10772 chr12 133275309 + 9953423 9953553 SVA_F 1814 + 947 1089 61451 1 3 18 35 1 0 10 1 0 54 1 0 24 chain 4379 chr12 133275309 + 9953557 9953602 SVA_F 1814 + 966 1011 65369 45 chain 117314 chr12 133275309 + 9975176 9976703 THE1B-int 1605 + 0 1590 15996 184 0 21 225 1 26 104 14 15 229 2 0 497 1 2 5 0 8 165 0 8 84 0 1 16 chain 19258 chr12 133275309 + 9976717 9977079 THE1B 368 + 0 368 57281 103 19 18 48 1 0 23 43 51 61 9 8 27 10 11 18 chain 6480 chr12 133275309 + 9988006 9988092 THE1C-int 1605 + 1504 1591 79411 53 1 2 32 chain 34964 chr12 133275309 + 10026233 10026693 L1PA8 5853 + 5400 5852 38044 166 1 0 42 2 0 70 21 18 44 2 1 19 2 1 91 chain 24626 chr12 133275309 + 10026732 10027078 THE1B 368 + 0 368 49830 169 1 0 18 14 39 4 1 0 10 1 0 128 chain 43323 chr12 133275309 + 10029972 10030483 MER9a1 513 + 0 513 32546 454 0 2 57 chain 28712 chr12 133275309 + 10047950 10048254 AluYb8 318 + 0 303 43773 23 1 0 280 chain 19636 chr12 133275309 + 10087223 10087466 L1PBa 3878 + 3283 3526 56872 243 chain 332111 chr12 133275309 + 10105136 10109003 L1PA6 6164 + 2278 6160 6180 282 4 0 317 3 0 113 0 4 195 0 1 333 0 1 847 0 1 277 1 0 77 1 8 562 0 4 12 0 4 325 11 17 495 5 0 7 chain 68063 chr12 133275309 + 10113010 10114047 L1PB3 3668 + 2529 3566 24445 21 1 0 39 0 15 63 2 1 272 3 0 48 2 0 17 0 1 4 3 0 126 2 0 53 1 0 46 0 12 43 1 0 60 1 5 17 3 1 16 15 14 75 23 7 18 2 0 21 9 7 20 0 5 10 chain 5808 chr12 133275309 + 10114856 10114943 MADE1 96 + 4 96 81889 40 7 8 26 0 4 14 chain 26720 chr12 133275309 + 10195485 10195786 L1PA4 6152 + 5850 6151 46658 301 chain 59691 chr12 133275309 + 10196777 10197860 MER4E1 777 + 0 776 26462 22 12 13 118 0 3 110 315 0 28 0 1 226 0 11 12 14 6 226 chain 21642 chr12 133275309 + 10247612 10247970 THE1C 375 + 7 375 54299 81 1 0 94 51 51 25 9 20 97 chain 41067 chr12 133275309 + 10298478 10298987 MER9a3 513 + 0 513 33923 18 0 2 153 4 5 255 4 5 75 chain 41065 chr12 133275309 + 10362140 10362659 LTR10C 591 + 0 591 33926 106 0 72 332 6 1 10 8 13 57 chain 36324 chr12 133275309 + 10363332 10363797 LTR15 485 + 0 477 37192 75 1 0 48 0 1 26 0 2 100 0 4 21 0 4 68 0 1 102 6 7 18 chain 37681 chr12 133275309 + 10367931 10368380 LTR15 485 + 0 456 36283 150 0 2 125 0 4 66 2 3 106 chain 44730 chr12 133275309 + 10371740 10372258 LTR10C 591 + 0 591 31734 106 0 72 332 0 1 80 chain 43718 chr12 133275309 + 10394624 10395183 LTR5A 1029 + 0 1029 32309 50 0 455 269 0 10 87 12 11 69 0 2 44 0 4 28 chain 3280 chr12 133275309 + 10406627 10406664 L1MDb 1215 + 65 102 97178 37 chain 14858 chr12 133275309 + 10427178 10427429 L1MA2 4263 + 3872 4112 62449 62 33 31 93 7 0 18 1 0 30 1 0 6 chain 14858 chr12 133275309 + 10442601 10442852 L1MA2 4263 + 3872 4112 62448 62 33 31 93 7 0 18 1 0 30 1 0 6 chain 13620 chr12 133275309 + 10479172 10479409 L1PB2 3958 + 3571 3838 64138 29 20 19 54 7 6 69 18 50 40 chain 520671 chr12 133275309 + 10481375 10487825 L1PA7 6471 + 0 6466 2242 410 0 2 187 5 12 245 1 2 168 0 1 211 0 4 47 14 0 147 4 6 28 0 1 855 14 15 172 0 1 194 4 7 477 1 4 288 1 2 511 1 0 4 0 1 205 0 1 66 0 2 305 0 3 37 1 0 47 0 4 47 0 1 344 1 0 283 0 9 258 0 1 12 5 1 482 7 0 132 1 0 200 1 0 12 3 0 12 chain 175402 chr12 133275309 + 10518615 10520520 L1PA3long 6157 + 4251 6157 10808 294 0 1 1611 chain 67873 chr12 133275309 + 10580481 10581615 LTR12 884 + 0 884 24479 24 1 0 120 196 0 31 66 0 201 2 0 45 0 1 142 0 12 63 8 11 58 1 0 176 chain 10011 chr12 133275309 + 10580626 10580822 LTR12 884 + 276 388 63266 65 39 0 24 1 0 18 44 0 5 chain 1157 chr12 133275309 + 10580773 10580817 LTR12 884 + 293 337 67895 44 chain 28120 chr12 133275309 + 10582288 10582673 L1PA8 5853 + 5467 5846 44683 58 0 1 38 1 0 43 2 0 71 2 1 8 2 0 5 4 5 41 4 3 19 1 0 86 chain 25869 chr12 133275309 + 10647668 10648023 THE1B 368 + 0 368 47915 44 0 15 60 7 12 38 1 0 23 6 0 176 chain 5066 chr12 133275309 + 10670929 10670990 MLT1D 503 + 4 65 85327 61 chain 26916 chr12 133275309 + 10687494 10687856 THE1C 375 + 8 375 46387 114 3 0 7 1 11 118 1 0 92 2 1 24 chain 4481 chr12 133275309 + 10712930 10713000 L1PB1 5432 + 5334 5400 88432 12 3 1 23 1 0 22 1 0 8 chain 82214 chr12 133275309 + 10781438 10782373 L1PA4 6152 + 5199 6150 21198 101 0 6 790 0 10 44 chain 15603 chr12 133275309 + 10832234 10832413 L1PA2 6032 + 5847 6025 61530 39 0 1 132 2 0 6 chain 2974 chr12 133275309 + 10917931 10917995 MSTB2 466 + 318 383 100116 27 19 20 18 chain 8321 chr12 133275309 + 10925118 10925221 MER61F 604 + 471 572 74113 63 2 0 38 chain 27127 chr12 133275309 + 11040393 11040718 L1PA7 6471 + 6138 6465 46085 185 0 5 131 3 0 6 chain 19469 chr12 133275309 + 11099457 11099702 AluSc 308 + 41 285 57072 216 1 0 28 chain 112739 chr12 133275309 + 11101775 11103066 L1PA5 6144 + 4213 5508 16716 232 0 3 180 1 0 284 0 1 293 0 2 86 1 0 214 chain 490152 chr12 133275309 + 11108370 11114661 L1PA7 6471 + 0 6467 3418 227 32 32 150 1 2 489 3 4 452 1 0 29 0 1 109 12 15 274 0 1 198 0 2 5 4 3 67 12 13 68 0 11 50 0 2 33 0 1 106 2 0 6 0 2 50 2 1 116 0 2 115 1 2 285 0 1 1426 0 3 115 0 1 138 0 2 228 0 85 253 0 1 20 1 0 9 1 0 310 0 1 41 5 64 65 26 22 66 0 4 448 6 8 49 38 32 8 0 5 139 chain 135204 chr12 133275309 + 11149353 11150830 L1PA3long 6157 + 4680 6157 13523 1477 chain 22727 chr12 133275309 + 11214127 11214381 L1PA3long 6157 + 4311 4565 52794 254 chain 315276 chr12 133275309 + 11219376 11223799 L1PB1 5432 + 1083 5427 6498 88 0 1 82 11 12 63 0 2 74 1 25 79 0 8 203 0 13 187 26 3 329 0 1 112 23 15 120 0 3 176 0 1 150 3 0 155 1 7 25 0 24 85 0 1 45 0 2 36 6 7 40 2 9 13 0 2 441 8 18 222 0 2 28 0 1 311 0 1 4 1 0 17 0 1 158 13 15 128 3 0 15 0 1 167 1 2 117 0 1 172 1 2 9 124 0 24 1 0 9 1 0 4 22 16 53 3 2 15 2 1 42 1 0 16 15 2 29 2 0 5 5 4 10 2 0 8 7 6 10 1 0 21 1 0 13 1 0 14 1 0 5 1 0 4 chain 324272 chr12 133275309 + 11256065 11260158 L1P3 4156 + 18 4139 6332 233 2 1 68 1 0 577 0 15 400 22 6 174 0 1 280 0 1 855 0 1 30 0 1 52 0 5 40 0 2 300 0 1 119 16 39 388 0 3 22 0 1 182 16 11 281 2 0 7 3 2 23 chain 50178 chr12 133275309 + 11262278 11262959 L1PA8 5853 + 5179 5853 29495 383 1 0 48 2 0 69 36 34 25 4 3 19 1 0 93 chain 27135 chr12 133275309 + 11274621 11274931 L1PA5 6144 + 5827 6137 46073 310 chain 34232 chr12 133275309 + 11286216 11286634 L1PA6 6164 + 5744 6162 38539 418 chain 21179 chr12 133275309 + 11286647 11288570 L1PA8 5853 + 2750 4685 10016 270 0 1 191 1 2 180 2 1 247 18 22 89 0 1 118 0 1 186 0 4 306 0 1 315 chain 517822 chr12 133275309 + 11290236 11296301 L1PA4 6152 + 6 6084 2375 122 14 0 14 1 15 418 2 1 132 12 5 513 11 0 9 0 11 138 0 1 470 0 1 1314 0 1 120 0 1 222 1 2 101 0 3 280 0 6 669 0 7 719 1 0 666 0 1 23 2 1 46 0 1 45 chain 5562 chr12 133275309 + 11296366 11296871 L1PA8 5853 + 4685 5193 10016 36 8 9 59 0 1 161 4 5 54 7 5 67 0 2 109 chain 556520 chr12 133275309 + 11297656 11303685 L1PA2 6032 + 1 6032 332 3329 0 2 2700 chain 4295 chr12 133275309 + 11303706 11304096 L1PA8 5853 + 5470 5853 10016 94 1 0 46 2 0 69 21 19 42 3 2 18 1 0 93 chain 470398 chr12 133275309 + 11314749 11320102 L1PA4 6152 + 6 5881 3843 90 0 525 1501 1 0 78 0 2 905 1 0 76 7 6 102 4 5 643 2 0 696 1 0 1246 chain 53809 chr12 133275309 + 11358427 11359041 L1PA4 6152 + 5536 6151 28280 465 4 5 145 chain 521580 chr12 133275309 + 11377197 11383307 L1PA4 6152 + 30 6143 2203 1067 13 10 6 0 3 116 0 1 1643 0 1 337 2 1 667 1 0 4 0 1 375 0 3 615 12 12 357 1 0 563 1 0 192 7 8 131 chain 397148 chr12 133275309 + 11416212 11420885 L1PA4 6152 + 30 4729 5192 72 1 2 23 0 14 834 0 1 110 17 18 243 0 1 511 0 1 79 0 1 416 0 1 159 1 0 677 1 2 743 0 1 409 0 4 77 1 0 90 0 1 209 chain 57327 chr12 133275309 + 11458368 11459019 SVA_A 1864 + 1208 1864 27148 195 1 6 455 chain 29083 chr12 133275309 + 11469181 11469671 L1PA14 3548 + 2974 3442 43213 19 18 15 104 10 6 13 9 6 84 1 0 56 1 0 55 1 0 9 4 0 38 4 2 12 15 13 9 1 0 27 chain 23877 chr12 133275309 + 11473275 11473634 THE1B 368 + 0 368 50985 169 1 0 21 43 53 125 chain 16795 chr12 133275309 + 11529617 11529808 L1PA4 6152 + 5961 6152 60035 191 chain 74011 chr12 133275309 + 11536324 11537276 L1PA8 5853 + 4924 5853 23090 73 3 0 6 1 0 4 1 3 193 25 11 350 1 0 43 7 5 70 1 0 11 1 0 47 5 4 15 1 0 94 chain 6856 chr12 133275309 + 11541863 11542105 MER53 195 + 0 195 78120 30 38 15 4 1 0 48 84 62 18 1 0 18 chain 5026 chr12 133275309 + 11546479 11546540 U7 62 + 1 62 85540 61 chain 104613 chr12 133275309 + 11547110 11548392 LTR12C 1709 + 0 1709 17741 37 0 1 253 6 7 40 0 43 83 0 1 185 0 278 184 1 0 4 4 2 97 0 1 8 0 4 212 0 101 86 1 0 17 0 1 64 chain 13461 chr12 133275309 + 11618465 11618672 L1PA8 5853 + 5650 5853 64371 29 1 0 8 2 1 45 13 12 15 2 1 92 chain 40993 chr12 133275309 + 11621951 11622488 MER41A 554 + 0 554 33975 92 0 1 70 1 0 209 11 28 154 chain 11887 chr12 133275309 + 11808478 11808674 MER2 342 + 136 319 67040 7 15 0 35 6 9 59 0 1 47 3 1 24 chain 3563 chr12 133275309 + 11893908 11893952 Tigger4b 360 + 315 360 94726 36 0 1 8 chain 535818 chr12 133275309 + 11909211 11915316 L1PA4 6152 + 63 6151 1578 183 1 3 66 9 7 132 14 8 114 1 0 270 17 9 381 1 0 198 1 0 119 7 5 393 0 1 983 0 1 273 1 0 731 0 1 1479 2 1 617 0 1 112 chain 61905 chr12 133275309 + 11925655 11926584 L1P4 1494 + 272 1160 25886 10 1 2 262 5 0 110 5 8 56 69 31 32 0 1 81 1 0 117 2 0 5 6 8 25 1 0 107 1 0 33 chain 120990 chr12 133275309 + 11937474 11938770 L1PA2 6032 + 3081 4377 15348 1296 chain 77130 chr12 133275309 + 11971057 11971943 L1PA4 6152 + 4434 5353 22278 191 14 46 350 0 1 331 chain 69936 chr12 133275309 + 11971943 11972724 L1PA4 6152 + 5354 6141 24009 494 0 4 110 0 1 75 0 1 102 chain 24169 chr12 133275309 + 12058471 12058782 LTR7 482 + 125 482 50543 99 0 1 22 0 31 27 0 3 6 0 10 41 1 2 115 chain 297690 chr12 133275309 + 12058784 12062423 HERVH-int 3825 + 0 3825 6897 20 0 1 163 0 4 346 1 0 5 1 0 6 0 1 24 1 0 9 78 25 15 1 0 11 4 1 25 1 0 30 2 0 31 20 0 37 1 2 7 0 2 13 0 3 615 5 12 64 1 0 213 4 31 302 0 10 1042 12 14 36 0 210 268 0 2 225 chain 29612 chr12 133275309 + 12144712 12145053 L1PA6 6164 + 5804 6145 42466 341 chain 3210 chr12 133275309 + 12202659 12202697 MER58A 224 + 170 208 97805 38 chain 5164 chr12 133275309 + 12227708 12227809 L1MCa 1829 + 1592 1689 84842 30 2 0 15 20 18 34 chain 4257 chr12 133275309 + 12300882 12300962 MLT2B1 522 + 8 84 89777 27 17 6 11 0 7 25 chain 29873 chr12 133275309 + 12321509 12321891 MLT2A1 477 + 0 385 42159 142 0 1 25 1 5 31 2 0 181 chain 26949 chr12 133275309 + 12344239 12344916 MLT2A1 477 + 0 385 46342 168 6 3 8 0 1 14 0 1 28 303 0 72 3 15 75 chain 25197 chr12 133275309 + 12451601 12451945 AluSc 308 + 0 306 48951 113 37 1 176 2 0 16 chain 21935 chr12 133275309 + 12536763 12537050 AluSp 311 + 8 289 53924 103 2 1 20 1 0 118 5 1 38 chain 20987 chr12 133275309 + 12550581 12550901 L1PA7 6471 + 6181 6470 55140 114 62 31 144 chain 3391 chr12 133275309 + 12551490 12551547 Charlie1a 1436 + 598 655 96172 14 1 0 5 1 2 36 chain 130090 chr12 133275309 + 12565396 12566924 SVA_D 2077 + 22 2075 14027 15 7 6 498 0 1 181 0 3 10 27 24 87 1 124 19 1 3 9 0 1 4 0 403 659 4 0 6 chain 28815 chr12 133275309 + 12596772 12597139 L1PA5 6144 + 5774 6141 43606 215 1 8 9 13 6 129 chain 12788 chr12 133275309 + 12650854 12651012 MER41A 554 + 265 424 65459 131 1 2 26 chain 3115 chr12 133275309 + 12669701 12669736 MER63A 208 + 172 207 98661 35 chain 3118 chr12 133275309 + 12749531 12749568 MER51A 677 + 364 401 98640 37 chain 4920 chr12 133275309 + 12755957 12756044 MLT2C2 476 + 387 476 86055 20 4 0 9 9 15 45 chain 6015 chr12 133275309 + 12767683 12767755 MER2 342 + 141 213 81020 72 chain 20030 chr12 133275309 + 12833658 12834019 THE1B 368 + 0 368 56343 47 7 8 46 15 16 59 0 2 6 62 66 58 1 0 60 chain 18324 chr12 133275309 + 12865860 12866081 AluSc 308 + 45 266 58328 221 chain 19480 chr12 133275309 + 12927677 12927940 MER50 708 + 350 609 57054 47 2 0 97 9 6 24 0 1 84 chain 13083 chr12 133275309 + 13007342 13007596 MER4D 903 + 14 278 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5036 6132 18573 239 0 4 853 chain 82249 chr12 133275309 + 18408536 18409559 L1PA7 6471 + 5436 6470 21191 174 0 1 9 2 1 20 9 21 287 2 3 507 2 0 11 chain 101347 chr12 133275309 + 18499964 18501178 LTR12C 1709 + 0 1709 18148 206 0 1 93 0 1 188 0 1 172 2 490 72 0 4 481 chain 8400 chr12 133275309 + 18519921 18520015 SVA_A 1864 + 1770 1864 73901 94 chain 22999 chr12 133275309 + 18535846 18536115 L1PA4 6152 + 5879 6152 52361 125 1 0 137 0 5 6 chain 185913 chr12 133275309 + 18597606 18599653 L1PA3long 6157 + 4103 6152 10300 936 0 1 266 0 1 695 1 8 7 7 0 135 chain 14541 chr12 133275309 + 18601289 18601556 L1MA5A 2387 + 2063 2296 62854 8 0 2 34 1 0 51 6 4 25 1 0 28 3 0 15 18 0 7 11 0 59 chain 274592 chr12 133275309 + 18601830 18605583 L1PBa1 4058 + 300 4040 7589 11 5 0 115 1 2 138 1 0 24 42 41 14 7 13 153 1 2 228 1 2 7 0 5 60 0 1 203 0 1 247 2 1 80 0 4 10 1 0 351 7 8 44 0 1 326 0 1 61 13 0 10 6 8 129 0 4 705 1 0 81 7 12 32 0 1 44 1 7 7 6 0 62 1 0 81 0 3 26 2 1 5 1 0 29 1 0 45 2 0 104 3 1 19 1 0 6 4 0 19 2 0 19 2 1 4 1 0 4 3 0 21 1 0 9 2 1 10 13 9 8 1 0 17 7 6 36 chain 53600 chr12 133275309 + 18607308 18607918 L1PA4 6152 + 4748 5358 28361 285 0 1 301 5 4 19 chain 51266 chr12 133275309 + 18664605 18665167 L1PA3long 6157 + 5595 6157 29144 562 chain 13278 chr12 133275309 + 18689342 18689557 MER30 238 + 0 238 64666 15 24 31 62 3 0 6 2 24 61 3 0 39 chain 71305 chr12 133275309 + 18710732 18711529 L1PA4 6152 + 5339 6136 23693 797 chain 5650 chr12 133275309 + 18714710 18714885 MER20 218 + 41 218 82562 41 64 59 37 20 27 13 chain 18718 chr12 133275309 + 18744877 18745191 L1PA15 4387 + 4063 4366 57879 41 1 0 26 1 0 54 2 1 21 4 0 11 1 0 50 6 3 35 1 7 15 10 5 24 1 0 10 chain 40402 chr12 133275309 + 18754527 18755085 MER41B 635 + 66 635 34383 59 9 10 94 12 23 208 9 8 167 chain 522447 chr12 133275309 + 18760656 18767006 L1PA7 6471 + 1 6469 2159 399 4 5 144 0 1 7 11 14 145 3 33 282 1 5 37 0 1 131 0 1 547 1 0 457 8 101 39 0 1 38 26 0 248 1 2 418 0 1 513 1 4 37 2 0 319 0 3 1021 4 1 434 0 12 220 0 2 712 7 0 133 chain 278289 chr12 133275309 + 18777632 18781589 L1PA8A 6298 + 2712 6290 7481 257 0 4 380 28 13 52 1 5 58 0 7 199 107 11 158 15 16 463 311 22 6 0 1 134 2 0 34 5 8 245 0 1 464 3 0 239 2 1 383 0 2 6 2 0 226 1 7 176 chain 7466 chr12 133275309 + 18778607 18778704 L1PA8A 6298 + 3588 3685 74129 97 chain 556932 chr12 133275309 + 18785219 18791371 L1PA3long 6157 + 6 6157 301 2184 1 0 3967 chain 2725 chr12 133275309 + 18798049 18798098 MLT1C 463 + 125 174 102147 12 1 0 11 5 6 20 chain 164417 chr12 133275309 + 18832232 18834692 L1PA11 4918 + 2366 4629 11464 53 0 2 119 11 0 119 0 7 163 9 8 148 0 2 49 5 1 1018 163 7 176 7 8 85 13 6 56 2 1 80 2 0 14 1 0 19 41 32 15 1 0 9 64 48 18 chain 40644 chr12 133275309 + 18918074 18918634 L1PA11 4918 + 3954 4508 34193 19 0 1 212 2 1 206 2 1 13 2 0 67 2 0 14 2 1 19 chain 17118 chr12 133275309 + 18948788 18949133 L1PB3 3668 + 3294 3613 59675 48 0 2 18 0 25 3 25 0 88 20 4 13 1 0 8 1 0 25 3 1 37 7 3 13 1 0 12 8 5 14 chain 15413 chr12 133275309 + 19025043 19025252 MER57F 435 + 0 212 61770 22 11 14 176 chain 50017 chr12 133275309 + 19092193 19092759 SVA_B 1603 + 999 1603 29556 17 1 38 483 0 1 65 chain 23954 chr12 133275309 + 19300852 19301165 AluSp 311 + 0 297 50859 120 16 0 177 chain 23156 chr12 133275309 + 19325734 19326010 AluSp 311 + 8 285 52131 74 0 1 202 chain 20597 chr12 133275309 + 19333051 19333296 AluSp 311 + 49 293 55636 83 1 0 161 chain 59596 chr12 133275309 + 19340309 19340962 SVA_D 2077 + 1157 2076 26484 122 0 262 435 0 4 96 chain 5259 chr12 133275309 + 19435866 19435924 MER39 703 + 0 58 84392 58 chain 233915 chr12 133275309 + 19566569 19569155 L1PA4 6152 + 2488 5081 8639 926 0 4 272 0 1 596 0 2 792 chain 22363 chr12 133275309 + 19584419 19584801 THE1B 368 + 0 368 53327 44 79 66 62 7 6 190 chain 17729 chr12 133275309 + 19586064 19586301 L1PB2 3958 + 3602 3838 58978 16 1 0 61 1 0 73 2 0 23 1 0 21 0 4 38 chain 4255 chr12 133275309 + 19591456 19591648 MER3 215 + 19 210 89785 43 11 113 12 22 0 5 81 0 18 chain 3629 chr12 133275309 + 19613824 19613862 tRNA-Phe-TTY 73 + 0 38 94198 38 chain 27377 chr12 133275309 + 19625727 19626082 THE1A 353 + 0 353 45732 109 2 1 92 1 0 151 chain 69002 chr12 133275309 + 19692729 19693821 L1PB1 5432 + 4346 5422 24211 124 12 13 25 1 3 75 19 23 19 0 2 455 0 4 26 0 1 22 1 0 5 5 4 11 5 1 9 2 0 52 2 1 16 1 0 45 1 0 14 23 12 18 25 20 23 2 1 22 9 8 4 1 0 18 chain 14236 chr12 133275309 + 19766651 19766805 L1HS 6032 + 5878 6032 63281 154 chain 300828 chr12 133275309 + 19814514 19817920 L1P1 4361 + 1 3411 6803 503 0 1 69 10 9 498 0 3 2079 1 2 246 chain 43031 chr12 133275309 + 19823379 19823914 LTR12_ 688 + 0 688 32755 132 0 49 171 0 103 175 0 1 57 chain 36612 chr12 133275309 + 19871779 19872390 L1PB1 5432 + 4842 5427 37010 163 0 4 94 1 2 9 3 0 20 1 0 13 27 20 53 2 1 9 7 6 40 40 32 19 2 0 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 11621 chr12 133275309 + 19918369 19918532 L1P3 4156 + 3948 4114 67533 58 8 13 88 2 0 7 chain 3382 chr12 133275309 + 19952846 19952885 MER33 330 + 0 39 96276 39 chain 34385 chr12 133275309 + 19993999 19994402 L1PA6 6164 + 5756 6160 38443 344 0 1 59 chain 484521 chr12 133275309 + 20066612 20072865 L1PA8A 6298 + 64 6291 3542 6 2 0 8 6 1 20 4 1 18 23 14 15 45 40 17 7 4 12 26 22 15 4 0 8 1 0 66 6 0 37 0 3 36 2 0 15 1 0 11 4 2 247 11 12 443 8 0 5 1 0 82 1 0 1116 0 1 31 12 8 99 0 1 83 2 1 14 0 3 61 5 3 113 6 10 176 4 0 21 0 4 261 0 11 200 0 4 174 0 1 236 4 6 16 1 2 676 3 7 450 0 1 192 3 2 352 0 1 619 1 2 7 0 5 8 5 0 89 chain 40690 chr12 133275309 + 20076642 20077237 L1PA8 5853 + 5266 5847 34153 107 3 6 32 3 13 140 1 0 46 2 0 37 6 0 6 20 5 20 2 1 61 2 1 19 2 1 86 chain 20571 chr12 133275309 + 20088764 20089090 L1PA17 2846 + 2385 2692 55681 114 3 0 10 37 24 26 1 0 73 1 0 17 1 0 43 chain 10451 chr12 133275309 + 20092211 20092362 L1PBa1 4058 + 10 157 69518 24 3 2 11 5 3 5 1 0 102 chain 16032 chr12 133275309 + 20095705 20095994 L1PB4 2604 + 2297 2572 60988 80 48 32 35 15 16 14 0 1 97 chain 3658 chr12 133275309 + 20192558 20192602 MADE1 96 + 1 46 93930 25 0 1 19 chain 39174 chr12 133275309 + 20209541 20210062 HUERS-P2-int 2744 + 745 1310 35233 55 0 2 5 1 2 38 0 19 41 16 37 82 0 1 283 chain 25683 chr12 133275309 + 20285971 20286323 THE1B 368 + 0 368 48196 44 5 20 42 1 2 64 1 0 26 0 2 93 1 0 75 chain 64803 chr12 133275309 + 20385213 20385939 L1PA5 6144 + 5408 6134 25237 726 chain 15998 chr12 133275309 + 20655455 20655650 MER107 203 + 6 203 61026 126 0 1 47 0 1 22 chain 22301 chr12 133275309 + 20662209 20662537 THE1C-int 1605 + 110 1351 53407 35 0 55 123 7 855 35 2 12 53 1 0 4 0 1 68 chain 542663 chr12 133275309 + 20667837 20673858 L1PA3long 6157 + 0 6157 1167 69 1 2 81 0 1 614 9 137 1357 0 2 2085 0 3 362 1 0 1268 0 2 174 chain 5084 chr12 133275309 + 20691161 20691224 L1PA16 3655 + 3511 3575 85230 17 0 1 46 chain 10104 chr12 133275309 + 20762796 20762908 L1HS 6032 + 4 116 70189 112 chain 38175 chr12 133275309 + 20762908 20763350 LTR7 482 + 0 474 35929 225 0 1 38 0 31 179 chain 288239 chr12 133275309 + 20763360 20767404 HERVH-int 3825 + 0 3825 7188 532 5 0 6 64 0 32 1 0 10 1 0 24 28 0 14 1 0 13 3 0 7 21 0 19 148 0 16 209 0 25 2 1 57 0 1 7 0 2 12 0 3 127 7 8 64 2 1 120 0 2 338 0 1 241 6 33 299 0 10 46 1 2 568 0 1 450 0 3 25 8 218 250 13 14 44 0 1 178 chain 3713 chr12 133275309 + 20763921 20763967 HERVH-int 3825 + 436 482 92327 46 chain 2963 chr12 133275309 + 20764248 20764289 HERVH-int 3825 + 638 698 89264 19 0 20 20 1 0 1 chain 2974 chr12 133275309 + 20764408 20764469 HERVH-int 3825 + 631 670 100140 26 22 0 13 chain 38036 chr12 133275309 + 20768608 20769052 LTR7 482 + 0 476 36047 225 0 1 35 0 31 184 chain 536233 chr12 133275309 + 20769070 20775100 L1PA3long 6157 + 119 6157 1553 317 2 1 330 0 2 618 1 0 939 1 0 862 0 1 357 0 3 397 0 1 1363 0 4 843 chain 433063 chr12 133275309 + 20951900 20957242 L1PA7 6471 + 1088 6466 4705 8 0 1 113 0 4 334 0 1 48 0 3 120 0 2 475 0 4 208 7 5 225 0 2 114 0 4 6 2 0 335 0 4 101 26 25 298 0 1 397 0 1 693 2 1 48 0 8 16 0 1 255 1 0 54 9 10 224 0 1 377 1 4 68 12 14 765 chain 36818 chr12 133275309 + 20969625 20970152 MLT2A2 560 + 4 552 36872 402 44 65 81 chain 11251 chr12 133275309 + 20976658 20976793 L1PA6 6164 + 6025 6160 68164 135 chain 350823 chr12 133275309 + 21004486 21008815 L1PA7 6471 + 2104 6451 5900 5 2 0 240 13 6 137 1 2 125 7 19 412 0 3 167 14 18 265 1 0 346 1 0 153 0 1 318 1 0 286 0 2 394 4 5 76 1 0 338 0 1 38 8 13 148 2 0 188 0 1 41 0 1 140 0 1 8 0 1 304 2 1 143 chain 64666 chr12 133275309 + 21014221 21015026 L1PA8A 6298 + 5473 6290 25275 20 0 5 29 0 1 42 0 2 113 0 4 601 chain 61874 chr12 133275309 + 21097717 21098424 L1PA5 6144 + 3798 4508 25893 183 0 1 4 1 0 4 0 3 515 chain 12964 chr12 133275309 + 21123702 21123842 L1PA3long 6157 + 5164 5304 65160 140 chain 77067 chr12 133275309 + 21123842 21124686 L1PA3long 6157 + 5308 6155 22299 317 0 3 527 chain 106691 chr12 133275309 + 21149428 21150802 L1P3 4156 + 23 1406 17470 228 2 1 33 0 2 35 1 0 78 0 1 4 1 0 250 0 1 19 5 12 134 5 6 462 2 1 5 0 1 110 chain 37982 chr12 133275309 + 21201882 21202375 L1PA8 5853 + 5367 5853 36088 197 1 0 44 2 0 74 9 7 50 7 6 15 4 3 90 chain 344795 chr12 133275309 + 21284251 21288024 L1PA2 6032 + 0 6032 5988 143 9 2269 837 1 0 2783 chain 100371 chr12 133275309 + 21326308 21327883 THE1B-int 1605 + 0 1587 18250 12 2 4 95 54 0 263 5 8 48 96 79 4 1 0 169 2 0 7 14 40 11 8 17 10 7 4 16 0 1 28 12 28 296 1 0 38 2 0 128 3 4 131 20 54 92 chain 488210 chr12 133275309 + 21360435 21366292 L1PA6 6164 + 2 5898 3465 110 12 11 16 6 18 37 1 2 273 0 1 39 2 1 230 6 7 192 0 25 305 14 12 509 4 0 542 4 6 59 0 4 1820 0 1 172 0 1 920 1 0 583 chain 28940 chr12 133275309 + 21381127 21381515 L1PB3 3668 + 2808 3191 43420 177 2 0 20 3 0 43 1 0 34 3 4 105 chain 552092 chr12 133275309 + 21395009 21401039 L1PA2 6032 + 0 6031 603 1114 0 1 2271 2 1 350 0 1 2293 chain 549743 chr12 133275309 + 21419215 21425234 L1PA2 6032 + 10 6032 765 247 1 0 474 6 5 1677 0 1 60 0 3 2378 0 1 1176 chain 10200 chr12 133275309 + 21469648 21469791 MER30 238 + 71 232 70012 22 0 3 9 7 22 105 chain 33741 chr12 133275309 + 21581180 21581600 LTR2 463 + 0 463 38889 129 0 3 131 0 40 160 chain 263708 chr12 133275309 + 21582680 21586007 HERVL-int 5654 + 0 5654 7861 347 0 2281 109 0 3 86 5 6 246 0 3 130 0 9 68 0 1 4 1 0 783 0 1 134 0 12 357 3 17 160 6 0 417 1 21 30 16 4 348 0 1 76 chain 25136 chr12 133275309 + 21586007 21586410 MLT2A2 560 + 0 510 49065 168 12 10 15 39 34 74 3 112 45 0 5 47 chain 28942 chr12 133275309 + 21611277 21611586 AluYb8 318 + 0 308 43419 132 1 0 176 chain 82411 chr12 133275309 + 21644941 21645931 LTR5_Hs 974 + 0 974 21148 60 1 0 172 0 1 160 22 0 66 0 4 407 1 0 35 5 8 61 chain 103722 chr12 133275309 + 21661347 21662731 LTR12C 1709 + 0 1709 17846 172 0 1 291 3 5 132 5 6 6 4 0 52 0 277 129 0 47 106 0 4 209 35 31 95 0 33 29 32 0 84 chain 5912 chr12 133275309 + 21723920 21724009 Tigger1 2417 + 160 251 81438 31 1 4 32 2 1 23 chain 376369 chr12 133275309 + 21746614 21751023 L1PA6 6164 + 1640 6161 5546 382 0 85 71 1 0 128 0 2 281 0 5 595 0 1 134 1 10 93 2 0 42 0 1 29 0 1 197 5 0 316 1 0 353 0 1 285 0 5 365 0 6 710 0 1 94 1 2 202 0 3 121 chain 55297 chr12 133275309 + 21798659 21799257 L1PA2 6032 + 5431 6029 27777 598 chain 49613 chr12 133275309 + 21812285 21812857 L1PA7 6471 + 5896 6468 29720 572 chain 66049 chr12 133275309 + 21825028 21825803 L1PA7 6471 + 5695 6468 24946 764 2 0 9 chain 19200 chr12 133275309 + 21883275 21883577 THE1B 368 + 65 368 57348 41 21 18 47 1 0 26 1 4 8 1 5 16 1 0 10 1 0 128 chain 529869 chr12 133275309 + 21899335 21905423 L1PA5 6144 + 4 6143 1832 724 0 1 304 1 0 381 1 6 31 0 1 911 0 1 323 0 7 549 1 5 30 0 1 89 0 1 105 0 1 97 0 1 100 1 0 3 1 0 138 6 5 14 0 13 114 0 1 736 1 3 185 0 1 840 0 1 98 0 7 116 5 12 183 chain 5367 chr12 133275309 + 21947242 21947321 L1PB1 5432 + 5181 5258 83861 39 4 3 13 1 0 22 chain 501547 chr12 133275309 + 21962207 21968366 L1PA6 6164 + 0 6161 3076 178 1 0 4 0 1 261 25 5 84 1 2 32 9 8 214 0 17 309 6 5 326 1 0 271 0 1 427 0 1 916 0 1 120 1 2 4 0 1 340 1 0 832 0 4 282 0 1 35 6 7 334 1 0 298 6 7 48 0 2 520 0 1 254 6 0 6 chain 53484 chr12 133275309 + 22009715 22010396 THE1B-int 1605 + 918 1597 28401 376 10 7 201 0 1 94 chain 150983 chr12 133275309 + 22107548 22110124 L1PB1 5432 + 3140 5422 12291 70 310 11 78 1 9 424 1 0 30 12 13 301 30 39 514 0 3 152 33 50 13 8 6 68 12 18 149 0 4 6 30 20 10 0 1 5 1 0 12 1 0 4 24 18 52 17 17 44 1 0 15 2 0 6 15 6 18 17 14 6 2 0 24 1 0 20 2 1 13 1 0 3 3 0 15 chain 4895 chr12 133275309 + 22114376 22114456 LTR8 732 + 537 618 86176 28 12 13 40 chain 67276 chr12 133275309 + 22133965 22134772 L1PA7 6471 + 4288 5090 24628 663 1 0 40 3 2 80 3 0 17 chain 538874 chr12 133275309 + 22136532 22142539 L1PA3long 6157 + 0 6152 1404 152 0 1 589 1 0 34 0 128 943 0 1 542 0 4 458 0 9 2437 6 10 76 1 0 768 chain 32085 chr12 133275309 + 22142591 22142960 L1PA5 6144 + 5774 6144 40284 220 0 1 149 chain 418310 chr12 133275309 + 22147482 22152712 L1PA7 6471 + 1282 6470 4905 173 1 0 259 0 3 42 1 0 603 0 1 275 2 0 458 0 4 52 67 17 129 1 2 210 0 1 431 9 5 453 0 6 90 21 15 163 0 4 261 1 0 16 1 0 146 0 1 4 1 0 105 1 0 403 0 3 52 1 0 4 0 1 24 0 2 39 0 1 572 6 5 153 chain 96189 chr12 133275309 + 22177917 22178972 L1PA4 6152 + 4825 5879 18752 600 1 0 454 chain 2967 chr12 133275309 + 22238085 22238119 MLT1G3 592 + 0 34 100219 34 chain 2001 chr12 133275309 + 22238553 22238574 MLT1G3 592 + 493 514 106279 21 chain 202349 chr12 133275309 + 22299963 22302657 MER4-int 2692 + 11 2692 9621 25 2 0 63 1 0 4 1 0 12 6 1 4 1 0 34 0 4 138 1 0 105 0 1 396 11 12 109 0 1 412 50 50 478 12 7 138 1 0 47 7 8 146 0 1 37 5 4 29 5 0 10 1 0 77 4 0 121 1 5 22 0 1 161 0 1 17 chain 17174 chr12 133275309 + 22306094 22306344 MER4A1 472 + 198 472 59602 32 6 7 10 7 28 125 1 3 69 chain 433556 chr12 133275309 + 22341815 22346718 L1PA4 6152 + 1087 5969 4695 5 3 0 144 0 1 428 1 0 8 11 9 135 0 1 829 32 14 1191 4 7 776 1 0 1263 1 0 71 chain 532520 chr12 133275309 + 22365624 22372074 L1PA7 6471 + 3 6469 1731 230 15 0 98 10 9 72 1 0 502 0 9 254 4 5 247 5 0 132 1 0 959 0 2 109 0 1 265 11 21 134 0 1 425 1 0 122 3 4 205 0 10 391 0 2 743 1 0 542 0 1 40 0 2 65 1 2 181 0 1 221 2 0 118 2 4 184 1 0 153 chain 34019 chr12 133275309 + 22376704 22377184 LTR12C 1709 + 0 461 38695 64 37 20 97 2 0 5 8 10 105 3 1 159 chain 8265 chr12 133275309 + 22383703 22383802 L1PA7 6471 + 5510 5613 74252 92 0 4 7 chain 13204 chr12 133275309 + 22383805 22383958 L1PA7 6471 + 5614 5770 64771 98 0 3 55 chain 2476 chr12 133275309 + 22383959 22383988 L1PA7 6471 + 5770 5799 103729 29 chain 54359 chr12 133275309 + 22383994 22384653 L1PA7 6471 + 5808 6468 28102 499 1 9 9 8 0 66 6 7 70 chain 517723 chr12 133275309 + 22400101 22406177 L1PA5 6144 + 2 6139 2380 175 0 1 168 5 1 822 9 0 229 0 9 169 22 17 1571 1 0 115 1 0 17 0 1 381 1 0 5 0 1 371 0 1 137 1 0 4 0 1 332 0 68 714 0 1 646 0 1 36 2 1 142 chain 27304 chr12 133275309 + 22421329 22421822 L1PA13 3608 + 3059 3522 45822 41 31 28 32 1 0 114 2 0 61 7 0 56 1 0 5 2 0 40 63 55 13 5 0 14 1 0 4 chain 27304 chr12 133275309 + 22427969 22428462 L1PA13 3608 + 3059 3522 45821 41 31 28 32 1 0 114 2 0 61 7 0 56 1 0 5 2 0 40 63 55 13 5 0 14 1 0 4 chain 14310 chr12 133275309 + 22433353 22433536 L1PB4 2604 + 2386 2568 63184 166 1 0 16 chain 381912 chr12 133275309 + 22437704 22443053 L1PB1 5432 + 56 5409 5453 247 1 2 4 1 0 9 0 6 82 2 1 187 40 22 8 0 22 229 1 0 333 5 7 180 1 0 8 2 0 5 22 12 66 0 1 46 4 8 432 37 10 8 0 27 276 1 0 32 0 4 95 1 0 51 36 0 8 1 34 73 0 2 248 4 3 91 0 4 324 1 2 248 1 0 216 1 3 162 0 1 217 1 0 34 0 1 208 0 2 123 13 18 128 0 56 97 6 6 18 0 1 276 1 4 10 62 20 23 1 0 10 16 11 9 2 0 53 2 1 16 1 0 19 3 4 21 1 0 15 11 0 8 1 0 22 9 6 14 2 0 24 1 0 21 1 0 13 1 0 5 chain 62806 chr12 133275309 + 22486875 22487580 L1PA4 6152 + 4810 5519 25679 494 0 4 211 chain 22961 chr12 133275309 + 22532066 22532344 AluSp 311 + 18 296 52424 278 chain 6128 chr12 133275309 + 22606478 22606546 L1PA7 6471 + 6240 6308 80619 68 chain 13414 chr12 133275309 + 22606546 22606698 L1PA7 6471 + 6310 6462 64448 152 chain 41595 chr12 133275309 + 22613579 22614100 MER41A 554 + 0 526 33627 160 1 2 233 1 5 126 chain 19343 chr12 133275309 + 22618561 22618794 MER41A 554 + 162 395 57189 233 chain 10538 chr12 133275309 + 22618797 22618928 MER41A 554 + 399 530 69343 131 chain 6850 chr12 133275309 + 22619711 22619803 MER51D 577 + 418 507 78143 6 4 0 74 0 1 8 chain 19235 chr12 133275309 + 22807503 22808572 THE1D 372 + 0 370 57312 15 0 2 44 3 24 84 785 64 107 1 0 30 chain 3273 chr12 133275309 + 22849234 22849303 MER58A 224 + 50 118 97270 29 21 20 19 chain 52432 chr12 133275309 + 22877775 22878528 L1PA8 5853 + 5086 5853 28746 16 0 3 383 1 10 28 6 13 25 1 0 45 2 0 67 4 3 11 13 14 36 2 1 11 12 11 90 chain 135120 chr12 133275309 + 22901734 22903320 L1PA5 6144 + 4590 6141 13534 38 1 0 305 0 1 1076 35 1 20 1 0 110 chain 2689 chr12 133275309 + 22917873 22917909 L1MA4 2864 + 2765 2803 102415 31 0 2 5 chain 18568 chr12 133275309 + 22950082 22950277 AluYa5 310 + 108 303 58028 195 chain 5188 chr12 133275309 + 23005471 23005722 L1ME1 1623 + 1231 1485 84737 48 172 175 31 chain 19876 chr12 133275309 + 23009626 23009858 L1PA5 6144 + 5896 6128 56567 232 chain 14663 chr12 133275309 + 23017522 23017839 L1PB 1623 + 1305 1586 62719 48 2 1 92 1 0 7 2 1 30 1 0 4 3 0 13 5 1 13 1 0 10 51 29 21 2 0 11 chain 7153 chr12 133275309 + 23026417 23026537 ERVL-int 1947 + 1734 1855 77091 29 1 0 24 4 3 18 6 9 38 chain 19282 chr12 133275309 + 23053592 23053956 THE1B 368 + 0 368 57257 8 1 0 7 2 0 4 0 1 88 8 9 59 36 33 4 0 1 14 4 12 66 30 29 33 chain 11264 chr12 133275309 + 23088096 23088256 Tigger3a 397 + 65 305 68147 39 9 89 112 chain 96114 chr12 133275309 + 23091513 23092812 L1P1 4361 + 2458 3586 18762 28 10 0 381 178 17 702 chain 485266 chr12 133275309 + 23145846 23151363 L1PA4 6152 + 10 5516 3527 451 7 1 118 1 0 156 1 0 1580 6 0 391 3 4 506 0 1 41 1 3 1043 1 0 1211 chain 35758 chr12 133275309 + 23157746 23158139 L1PA4 6152 + 4109 4502 37564 393 chain 300066 chr12 133275309 + 23263444 23266879 L1PA5 6144 + 2344 5880 6829 832 1 0 326 1 0 173 3 5 101 0 101 544 0 1 99 8 0 130 0 2 489 0 5 135 2 0 428 0 2 163 chain 98409 chr12 133275309 + 23285762 23286954 LTR12C 1709 + 0 1709 18492 289 0 20 155 3 1 166 4 1 18 0 485 89 0 4 50 0 10 102 1 0 4 0 1 232 1 0 11 0 4 67 chain 510905 chr12 133275309 + 23388702 23395115 L1PA5 6144 + 1 6124 2725 119 2 16 573 0 1 97 17 0 221 4 43 98 9 0 654 319 0 117 5 6 210 0 1 151 13 6 786 0 1 62 1 2 5 0 1 33 1 0 1094 1 0 995 1 5 146 5 5 489 0 1 185 chain 95493 chr12 133275309 + 23418069 23419145 L1HS 6032 + 1664 2743 18844 602 0 3 474 chain 223438 chr12 133275309 + 23437579 23440416 L1PA8 5853 + 2989 5853 8949 119 1 16 607 0 3 183 1 0 49 0 3 300 0 1 64 2 0 30 2 0 219 0 2 402 0 4 18 0 5 66 0 2 52 0 1 429 1 0 43 3 1 62 16 15 6 1 0 48 1 0 24 1 0 22 0 3 65 chain 64331 chr12 133275309 + 23448592 23449345 L1PA4 6152 + 4579 5332 25343 588 1 0 10 11 8 113 0 4 30 chain 475325 chr12 133275309 + 23464048 23470350 L1PA8A 6298 + 28 6286 3743 6 6 0 6 1 0 16 1 0 8 3 0 9 2 0 7 5 0 18 3 0 21 1 0 4 2 0 5 7 1 20 1 0 8 4 3 10 1 0 7 1 0 12 2 0 15 2 0 4 1 0 10 4 3 8 1 0 5 41 34 39 2 1 20 8 3 17 1 2 54 2 0 14 6 4 10 1 0 8 1 0 194 0 9 450 0 4 14 42 32 137 0 3 23 0 4 44 0 1 17 7 3 62 6 5 279 0 1 94 9 10 382 0 1 149 1 0 149 1 2 246 0 4 267 8 0 331 1 0 9 1 0 39 2 1 296 1 12 76 0 1 88 0 2 20 0 3 314 0 2 605 1 0 29 0 3 326 0 3 33 2 0 18 0 1 234 0 1 16 3 1 301 13 3 304 4 6 77 5 4 101 chain 26590 chr12 133275309 + 23635366 23635687 L1PA5 6144 + 5832 6142 46849 134 5 0 169 6 0 7 chain 24551 chr12 133275309 + 23746759 23747113 THE1B 368 + 2 368 49946 42 0 1 124 1 0 20 9 6 6 0 1 12 17 31 123 chain 77849 chr12 133275309 + 23876170 23877149 L1PA7 6471 + 5504 6467 22133 117 1 0 164 9 8 146 10 1 9 7 0 356 3 4 51 5 6 101 chain 10031 chr12 133275309 + 23924922 23925032 SVA_E 1901 + 1787 1897 70352 110 chain 8945 chr12 133275309 + 24307556 24307676 MER50 708 + 481 602 72679 11 2 3 107 chain 22430 chr12 133275309 + 24346789 24347036 L1PA5 6144 + 5895 6142 53232 247 chain 13304 chr12 133275309 + 24387271 24387473 MER30 238 + 0 238 64612 18 1 19 57 0 2 11 4 0 6 2 25 58 3 0 42 chain 51834 chr12 133275309 + 24408795 24409447 L1PA8A 6298 + 5649 6292 28929 190 4 5 251 7 0 74 14 11 112 chain 19396 chr12 133275309 + 24426227 24426463 L1PA6 6164 + 5914 6154 57134 49 0 8 123 4 0 60 chain 103195 chr12 133275309 + 24437208 24438428 L1PA7 6471 + 5197 6457 17933 320 0 37 5 3 0 4 0 1 134 0 2 93 0 2 513 16 17 132 chain 68875 chr12 133275309 + 24480071 24481121 L1MA2 4263 + 3074 4114 24239 86 3 2 65 1 0 9 4 8 141 0 2 180 2 0 17 6 3 74 2 1 72 13 17 17 41 38 145 16 14 93 6 0 47 1 0 9 chain 40047 chr12 133275309 + 24503504 24503983 L1PA7 6471 + 5989 6470 34624 219 0 1 104 3 0 5 0 4 148 chain 152463 chr12 133275309 + 24580803 24582479 L1PA3long 6157 + 4480 6156 12203 1676 chain 25869 chr12 133275309 + 24722705 24723055 THE1B 368 + 0 368 47914 44 0 15 115 1 0 18 4 0 114 5 13 49 chain 3485 chr12 133275309 + 24768849 24768889 LTR16E1 515 + 456 496 95348 40 chain 25517 chr12 133275309 + 24783231 24783543 L1PA8A 6298 + 5979 6288 48458 55 1 0 156 2 0 98 chain 98563 chr12 133275309 + 24865977 24867307 LTR12C 1709 + 84 1708 18472 317 17 0 69 10 3 18 42 43 120 0 278 123 16 63 97 20 13 399 1 0 81 chain 3799 chr12 133275309 + 24883628 24883673 L1MA7 2200 + 1621 1666 92845 45 chain 6740 chr12 133275309 + 24889566 24889681 MER21A 919 + 25 150 78514 56 4 5 10 7 0 7 2 18 29 chain 37651 chr12 133275309 + 24907395 24907930 LTR7B 505 + 0 492 36306 91 0 3 100 71 0 33 9 30 5 0 3 79 0 1 147 chain 126198 chr12 133275309 + 24925576 24926968 SVA_C 1631 + 20 1625 14523 626 0 40 38 0 40 135 0 133 593 chain 13215 chr12 133275309 + 24928154 24928356 LTR24B 570 + 76 278 64754 17 7 8 33 0 1 51 0 1 5 0 5 17 9 1 63 chain 11598 chr12 133275309 + 24929641 24929849 MER34C2 569 + 243 448 67576 52 32 0 4 6 0 6 0 7 10 0 30 22 1 0 16 1 0 58 chain 29145 chr12 133275309 + 25139508 25139845 L1PA7 6471 + 6121 6457 43126 41 1 0 295 chain 160193 chr12 133275309 + 25139866 25142483 L1PB1 5432 + 3098 5422 11739 92 0 4 15 0 33 471 37 22 131 0 1 147 0 1 200 1 0 252 5 9 88 27 17 44 4 5 158 309 0 91 15 40 72 11 14 93 18 16 25 1 0 5 1 0 12 2 0 3 2 0 9 2 0 52 6 5 11 1 0 45 1 0 15 3 1 14 9 0 15 2 0 6 0 1 13 2 0 24 1 0 23 1 0 11 2 1 17 chain 4139 chr12 133275309 + 25149208 25149252 MADE1 96 + 2 46 90513 44 chain 35224 chr12 133275309 + 25160297 25160795 LTR10F 562 + 6 562 37883 107 3 59 18 33 5 35 0 24 12 9 15 281 chain 25885 chr12 133275309 + 25163212 25163609 LTR7 482 + 0 467 47887 69 8 46 109 8 9 16 1 0 14 1 32 12 0 1 4 1 0 107 13 14 34 chain 275527 chr12 133275309 + 25163628 25167178 HERVH-int 3825 + 2 3825 7568 54 13 16 246 15 14 32 15 16 91 1 5 9 2 0 47 57 0 9 1 0 4 0 1 24 2 1 6 1 0 27 22 114 38 0 1 22 1 0 56 0 2 78 0 3 405 0 2 129 0 1 19 0 1 304 0 1 10 25 26 270 10 15 329 4 7 5 3 0 580 1 3 95 8 218 46 0 4 344 1 4 89 chain 23801 chr12 133275309 + 25169105 25169508 LTR7 482 + 0 475 51103 68 30 18 15 16 66 57 8 40 101 1 2 52 13 14 42 chain 272318 chr12 133275309 + 25169516 25175092 L1PB1 5432 + 1466 5413 7647 49 839 226 74 1 0 23 19 16 8 0 3 339 0 3 292 0 1 162 0 1 112 5 6 51 1 2 8 1 0 324 0 8 363 5 0 6 0 5 19 1 13 25 6 8 867 13 18 110 16 13 189 10 8 265 8 12 8 1015 0 11 1 0 24 1 0 9 16 11 11 5 3 47 1 0 17 2 1 40 8 7 12 3 0 7 15 6 18 8 5 14 2 0 24 1 0 21 1 0 13 1 0 9 chain 264240 chr12 133275309 + 25303575 25307151 L1PBa 3878 + 81 3624 7847 4 1 0 5 2 0 10 2 1 35 14 13 8 3 0 6 5 3 47 1 0 11 27 25 217 1 0 56 1 0 239 10 16 20 3 5 123 13 7 685 1 0 301 8 9 305 3 0 27 0 1 59 33 4 134 1 9 202 3 4 40 1 3 76 0 5 162 14 5 94 0 1 84 18 22 51 21 19 4 0 1 72 0 1 58 11 10 244 chain 41487 chr12 133275309 + 25307156 25307696 MLT2A2 560 + 9 560 33681 41 0 2 117 2 3 155 1 0 79 0 11 117 8 6 20 chain 425383 chr12 133275309 + 25307696 25313307 HERVL-int 5654 + 0 5654 4808 62 0 1 5 1 0 33 0 1 220 0 1 293 15 17 117 0 1 26 0 16 99 1 0 294 12 7 108 6 7 213 17 21 57 0 4 49 9 5 14 0 2 4 1 0 22 0 1 100 4 3 187 1 2 204 1 0 278 0 2 12 2 1 214 0 3 57 1 0 317 0 3 314 0 1 4 1 0 104 0 3 189 6 7 236 9 10 140 1 2 198 1 21 188 10 18 210 4 0 171 1 4 114 45 32 379 5 1 225 chain 44219 chr12 133275309 + 25313307 25313857 MLT2A2 560 + 0 560 32002 327 1 0 79 0 11 143 chain 136179 chr12 133275309 + 25313857 25315774 L1PB1 5432 + 3406 5281 13421 242 11 0 7 14 19 62 11 1 23 8 0 202 0 2 421 1 0 106 1 0 118 0 4 8 3 0 189 3 0 284 37 31 13 1 0 4 3 2 12 28 22 42 2 1 16 1 0 44 chain 65595 chr12 133275309 + 25341836 25342673 LTR12 884 + 0 884 25054 25 1 0 53 1 42 216 1 2 43 2 0 256 0 1 115 1 9 43 1 0 79 chain 106584 chr12 133275309 + 25369192 25370519 LTR12C 1709 + 2 1709 17484 177 6 13 176 20 21 248 11 0 13 0 278 110 1 0 74 1 0 4 4 2 106 0 4 168 0 102 71 0 4 54 1 0 82 chain 111707 chr12 133275309 + 25391245 25392582 LTR12C 1709 + 0 1709 16847 637 11 0 13 0 278 65 0 2 117 1 0 5 3 1 106 0 4 194 0 102 185 chain 122253 chr12 133275309 + 25399950 25401518 THE1B-int 1605 + 1 1600 15151 408 18 42 812 0 9 152 0 1 145 10 7 23 chain 25689 chr12 133275309 + 25426500 25426793 AluSp 311 + 4 297 48188 293 chain 9831 chr12 133275309 + 25437221 25437374 L1PA8 5853 + 5688 5844 70756 41 0 4 7 2 1 19 1 0 34 14 15 35 chain 25256 chr12 133275309 + 25450056 25450356 THE1A-int 1579 + 1279 1579 48859 300 chain 24401 chr12 133275309 + 25450356 25450711 THE1A 353 + 0 353 50167 17 2 0 30 0 1 46 1 0 13 26 27 68 1 0 151 chain 90935 chr12 133275309 + 25516716 25517706 L1PA3long 6157 + 5155 6146 19517 478 0 1 512 chain 543028 chr12 133275309 + 25536715 25542730 L1PA3long 6157 + 0 6156 1134 153 0 1 210 0 1 203 0 4 204 0 128 3855 0 6 868 0 1 522 chain 208143 chr12 133275309 + 25598231 25601163 L1MA2 4263 + 1143 4114 9416 81 0 3 12 1 2 76 1 0 131 0 3 83 7 9 66 20 18 146 2 1 111 0 3 44 3 38 196 0 5 13 0 1 6 3 0 5 0 3 169 0 7 265 8 7 34 1 0 32 17 15 180 1 2 40 0 1 633 5 2 76 1 0 50 5 0 6 0 5 73 13 10 53 1 0 5 0 1 90 15 13 79 0 1 6 14 7 12 1 2 30 1 0 9 chain 29645 chr12 133275309 + 25627827 25628137 AluYg6 310 + 0 310 42440 310 chain 403795 chr12 133275309 + 25631404 25637119 L1PB1 5432 + 57 5413 5106 486 3 1 7 0 2 366 3 10 36 1 0 430 1 0 7 2 0 5 27 14 255 6 1 129 0 1 439 1 0 6 16 17 27 0 1 228 12 5 66 1 0 286 4 0 177 0 5 187 0 24 209 2 0 95 1 0 4 0 1 18 331 4 122 1 4 86 1 0 20 0 1 304 5 7 472 3 0 8 0 1 72 0 2 398 1 0 14 3 0 21 1 0 9 33 21 18 1 2 29 5 4 16 1 0 43 1 0 16 3 0 7 14 5 15 12 9 14 2 0 24 1 0 20 2 1 13 1 0 9 chain 26048 chr12 133275309 + 25686838 25687257 LTR12C 1709 + 650 986 47663 187 83 0 149 chain 5507 chr12 133275309 + 25687038 25687108 LTR12C 1709 + 849 1038 69952 51 0 119 19 chain 81495 chr12 133275309 + 25728667 25729551 L1PA3long 6157 + 5258 6142 21333 884 chain 18149 chr12 133275309 + 25769922 25770125 L1PA5 6144 + 5931 6135 58508 70 0 1 133 chain 4961 chr12 133275309 + 25882129 25882190 LTR29 598 + 0 61 85836 61 chain 55442 chr12 133275309 + 25887185 25887932 MER4E1 777 + 0 769 27736 17 1 3 153 0 1 4 1 0 155 4 23 79 0 7 95 0 7 7 5 0 96 11 3 119 chain 38058 chr12 133275309 + 25891110 25891622 LTR10F 562 + 0 562 36027 48 1 0 68 0 10 37 1 57 11 14 0 130 0 1 4 1 0 132 3 2 62 chain 16508 chr12 133275309 + 25892381 25892688 HSMAR2 1300 + 1 311 60357 60 1 0 9 22 23 146 39 0 9 2 42 6 0 2 13 chain 106172 chr12 133275309 + 26082974 26084216 L1PA5 6144 + 4913 6138 17549 109 0 1 872 23 0 128 0 1 64 0 4 46 chain 33076 chr12 133275309 + 26084327 26085092 MER4A1 472 + 0 446 39456 13 1 0 34 3 2 32 0 1 1 317 0 192 2 1 170 chain 30099 chr12 133275309 + 26143752 26144198 MER1A 529 + 61 524 41949 17 0 3 5 14 11 70 16 32 254 17 18 53 chain 21192 chr12 133275309 + 26166030 26166283 L1PA7 6471 + 6218 6468 54898 149 0 1 93 4 0 7 chain 55936 chr12 133275309 + 26217834 26218501 L1PA2 6032 + 5384 6032 27581 18 0 2 465 43 22 141 chain 19250 chr12 133275309 + 26236071 26236292 L1PA7 6471 + 5447 5671 57292 174 0 3 47 chain 449256 chr12 133275309 + 26256671 26262577 L1PA8A 6298 + 683 6290 4408 426 15 0 8 0 9 15 1 0 568 0 1 6 1 2 4 1 0 124 0 15 43 0 3 82 0 1 20 3 2 116 0 1 91 0 3 139 0 1 25 1 0 120 0 2 192 0 2 51 0 4 385 0 1 173 1 0 74 334 0 6 0 5 15 0 4 77 0 1 378 0 1 381 0 1 43 3 0 78 7 9 168 0 1 608 0 4 47 1 0 265 1 0 72 12 14 558 1 3 59 7 0 100 chain 29701 chr12 133275309 + 26325170 26325545 MLT2A1 477 + 0 385 42366 171 3 0 34 8 21 159 chain 28836 chr12 133275309 + 26474511 26474818 AluYa5 310 + 0 306 43578 132 1 0 174 chain 57256 chr12 133275309 + 26512063 26512793 MER4A 717 + 0 717 27176 53 0 1 74 22 9 574 1 0 6 chain 35556 chr12 133275309 + 26517223 26518240 L1PA15 4387 + 3699 4366 37682 4 1 0 103 8 5 18 4 0 61 2 0 42 1 0 33 6 7 49 356 33 50 1 0 26 1 0 54 59 54 20 16 15 36 1 0 7 2 0 13 5 0 27 1 0 10 chain 19327 chr12 133275309 + 26562708 26562927 L1PA5 6144 + 5926 6144 57208 70 1 0 148 chain 4643 chr12 133275309 + 26572826 26572882 LTR54B 464 + 407 463 87575 56 chain 31326 chr12 133275309 + 26591112 26591548 L1MA3 4352 + 3256 3693 40867 331 38 39 67 chain 62220 chr12 133275309 + 26624486 26625481 L1MA3 4352 + 3388 4352 25808 290 9 0 34 25 25 123 1 2 37 3 0 194 69 58 109 2 0 22 1 0 6 1 0 17 10 9 14 4 0 24 chain 25409 chr12 133275309 + 26627638 26627928 L1PA7 6471 + 6176 6466 48612 290 chain 558502 chr12 133275309 + 26669559 26675706 L1PA3long 6157 + 0 6157 225 483 1 2 817 0 1 1863 0 2 23 1 0 259 0 6 2466 0 1 234 chain 45057 chr12 133275309 + 26752241 26752789 MER41A 554 + 0 554 31548 297 0 1 171 0 5 80 chain 173800 chr12 133275309 + 26754205 26756780 MER41-int 2638 + 85 2636 10907 18 18 9 58 29 20 23 4 1 16 3 1 17 1 0 7 4 0 36 4 0 162 1 0 5 15 13 24 0 1 160 12 1 145 26 40 147 6 12 50 6 5 151 8 7 14 0 2 36 7 9 51 0 1 28 0 5 52 4 9 141 6 3 129 2 1 171 11 9 30 9 8 14 9 0 17 0 1 223 3 1 354 6 10 23 0 1 79 chain 42491 chr12 133275309 + 26756789 26757640 MER41A 554 + 0 554 33067 185 3 17 95 0 1 143 312 0 113 chain 17816 chr12 133275309 + 26768224 26768423 L1HS 6032 + 5829 6028 58866 199 chain 463543 chr12 133275309 + 26775999 26781630 HERVL-int 5654 + 0 5654 4035 478 0 3 293 7 9 109 0 1 225 1 0 163 0 6 348 0 8 76 0 1 78 4 5 193 4 5 649 1 2 413 0 1 1034 1 2 244 2 0 474 13 12 67 0 6 184 0 1 250 0 4 48 10 0 262 chain 86014 chr12 133275309 + 26784371 26785353 SVA_D 2077 + 55 1265 20435 115 0 10 27 1 0 436 0 39 202 0 183 26 2 0 122 1 0 50 chain 96384 chr12 133275309 + 26785353 26786468 SVA_E 1901 + 683 1901 18727 21 0 80 28 1 0 5 1 0 110 3 0 31 2 1 93 0 1 4 18 45 119 0 1 679 chain 25720 chr12 133275309 + 26847017 26847322 AluYk4 311 + 0 299 48144 125 7 1 173 chain 77108 chr12 133275309 + 26867592 26868489 L1PA7 6471 + 5573 6469 22286 51 1 0 54 2 1 114 0 1 87 0 2 576 2 0 10 chain 350053 chr12 133275309 + 26899783 26903969 L1PA7 6471 + 2273 6468 5911 428 0 3 19 3 0 377 0 4 399 1 0 44 1 5 68 4 8 826 0 1 177 1 0 323 2 0 647 1 0 12 0 3 68 0 2 627 1 0 6 4 3 136 2 0 9 chain 5246 chr12 133275309 + 26932582 26932646 MER3 215 + 10 74 84467 64 chain 9986 chr12 133275309 + 26955973 26956134 MER30 238 + 33 238 70454 10 0 22 47 7 26 39 9 11 17 0 1 32 chain 200463 chr12 133275309 + 27041223 27043552 L1P2 5180 + 1183 3526 9706 756 0 1 405 0 1 44 0 4 223 0 5 157 0 3 744 chain 6546 chr12 133275309 + 27048227 27048322 Charlie1a 1436 + 611 707 79172 48 4 5 43 chain 177113 chr12 133275309 + 27091810 27093796 L1P1 4361 + 1127 3114 10721 244 0 1 467 0 1 100 1 0 1174 chain 39487 chr12 133275309 + 27100188 27100772 MER4B 649 + 0 633 35022 21 0 9 127 0 42 10 3 5 5 2 0 34 0 2 110 18 15 38 11 12 134 1 0 53 1 0 16 chain 8727 chr12 133275309 + 27123890 27124017 MER85 139 + 0 139 73157 96 10 22 21 chain 37393 chr12 133275309 + 27135396 27136049 L1MA2 4263 + 3563 4165 36479 21 5 1 77 1 0 144 3 0 146 35 33 73 16 9 39 1 0 8 68 35 16 chain 137321 chr12 133275309 + 27158656 27160642 L1PA16 3655 + 1576 3578 13316 217 0 2 101 4 3 23 0 1 35 0 7 41 0 2 21 2 0 24 0 3 177 1 0 271 5 8 46 45 50 30 10 9 28 14 13 28 1 4 96 1 0 87 7 9 5 1 0 65 1 3 55 0 1 38 10 11 60 6 0 50 2 1 90 12 10 114 5 6 157 chain 18845 chr12 133275309 + 27172400 27172651 MER65C 458 + 24 295 57721 34 5 21 101 0 4 111 chain 91967 chr12 133275309 + 27357278 27358492 L1PB1 5432 + 3728 4919 19346 180 0 1 100 2 0 176 4 9 115 0 1 150 38 0 156 8 14 262 1 0 5 1 6 16 chain 457308 chr12 133275309 + 27404617 27409791 L1PA4 6152 + 2 5187 4201 240 0 4 10 2 1 890 0 5 84 1 0 105 0 1 542 1 0 162 6 8 1352 0 1 1648 0 1 131 chain 4929 chr12 133275309 + 27416180 27416342 MIR 256 + 93 256 85999 23 86 87 53 chain 28841 chr12 133275309 + 27501134 27501437 AluYk12 309 + 0 303 43570 303 chain 5063 chr12 133275309 + 27511984 27512063 MLT1B 390 + 27 115 85339 27 6 14 41 0 1 5 chain 3553 chr12 133275309 + 27542415 27542454 MADE1 96 + 2 41 94824 39 chain 90794 chr12 133275309 + 27544326 27545393 L1PA7 6471 + 5395 6470 19535 226 1 0 223 0 8 304 0 1 153 1 0 141 0 1 18 chain 20799 chr12 133275309 + 27641674 27641945 LTR17 781 + 56 326 55359 100 1 0 22 4 3 54 0 1 90 chain 3143 chr12 133275309 + 27643042 27643076 tRNA-Ile-ATT 40 + 0 34 98446 34 chain 37736 chr12 133275309 + 27648146 27648715 L1MA2 4263 + 3563 4114 36250 21 5 1 77 1 0 144 3 0 146 35 33 73 16 9 39 1 0 8 chain 5154 chr12 133275309 + 27690377 27690436 tRNA-Lys-AAA 73 + 5 64 84893 59 chain 4225 chr12 133275309 + 27706658 27706712 L1MA3 4352 + 4228 4280 89969 32 2 0 20 chain 28690 chr12 133275309 + 27719388 27719691 AluYb8 318 + 4 307 43817 303 chain 4566 chr12 133275309 + 27816879 27816934 MER63B 433 + 312 367 87992 55 chain 41725 chr12 133275309 + 27848497 27849013 MLT2A2 560 + 0 528 33534 90 0 2 113 0 1 88 0 2 5 0 8 22 1 0 197 chain 23881 chr12 133275309 + 27851451 27851852 LTR32 486 + 15 456 50974 68 16 9 62 21 25 122 0 35 34 1 2 25 28 35 24 chain 137035 chr12 133275309 + 27873311 27874866 SVA_D 2077 + 0 2077 13339 27 0 12 19 1 3 829 0 498 13 5 1 10 0 1 30 4 7 279 0 10 338 chain 14495 chr12 133275309 + 27891880 27892124 MER30 238 + 0 235 62899 43 0 1 76 0 19 13 39 13 33 3 0 37 chain 4435 chr12 133275309 + 27899819 27899871 L1PA17 2846 + 2642 2693 88700 7 1 0 44 chain 8975 chr12 133275309 + 27983514 27983710 L1PB2 3958 + 3645 3837 72617 36 1 0 74 68 65 17 chain 71781 chr12 133275309 + 28101832 28102623 L1PA3long 6157 + 5367 6157 23599 29 1 0 761 chain 106333 chr12 133275309 + 28274908 28276092 L1PA4 6152 + 2926 4109 17518 430 1 0 753 chain 13941 chr12 133275309 + 28294289 28294582 THE1D 372 + 8 307 63687 83 17 16 4 1 0 11 8 12 11 60 64 98 chain 22572 chr12 133275309 + 28363601 28363863 AluY 311 + 0 269 53013 63 0 6 57 0 1 142 chain 2605 chr12 133275309 + 28367419 28367620 L1MDa 1598 + 685 886 102965 17 3 6 5 3 0 19 129 130 20 1 0 4 chain 94181 chr12 133275309 + 28379188 28380335 L1PA6 6164 + 5040 6162 19019 97 0 1 177 11 5 172 0 4 266 27 6 77 0 1 310 4 0 6 chain 33420 chr12 133275309 + 28388245 28388670 L1PB 1623 + 1023 1453 39159 38 0 2 335 0 4 44 1 0 7 chain 8246 chr12 133275309 + 28411781 28411897 Tigger3 1187 + 266 387 74301 19 0 2 22 0 1 25 0 3 5 2 1 43 chain 13968 chr12 133275309 + 28474784 28474944 L1P1 4361 + 2744 2904 63631 160 chain 267028 chr12 133275309 + 28476162 28479247 L1PA5 6144 + 2669 5768 7784 218 0 4 595 3 0 119 0 2 76 0 1 190 0 1 109 0 3 167 0 4 323 0 2 1285 chain 174952 chr12 133275309 + 28502159 28504095 L1PA3long 6157 + 4222 6151 10840 1085 1 0 835 6 0 9 chain 8228 chr12 133275309 + 28505393 28505483 5S 121 + 0 90 74327 90 chain 14327 chr12 133275309 + 28523948 28524108 L1PA5 6144 + 1625 1785 63155 160 chain 36449 chr12 133275309 + 28622844 28623503 L1PB1 5432 + 4792 5418 37104 311 13 11 24 1 0 8 1 0 12 5 1 9 2 0 9 0 3 36 22 20 44 1 0 16 3 0 6 1 0 12 58 44 12 1 0 15 0 1 5 1 0 13 1 0 6 3 0 8 chain 212010 chr12 133275309 + 28637770 28640147 L1PA5 6144 + 3388 6138 9282 2088 0 374 41 1 0 247 chain 51694 chr12 133275309 + 28716529 28717152 L1PA7 6471 + 5796 6421 28963 340 0 1 88 0 2 6 3 1 154 0 1 32 chain 58286 chr12 133275309 + 28734797 28735751 L1PB1 5432 + 4471 5427 26870 37 0 2 104 17 16 67 6 8 166 1 6 226 1 2 9 8 1 19 1 0 13 1 0 9 2 0 3 2 0 57 22 20 45 1 0 7 32 20 19 2 0 5 1 0 14 2 0 18 0 29 11 1 0 18 2 0 5 chain 25659 chr12 133275309 + 28744101 28744473 THE1C 375 + 0 375 48233 185 48 13 11 1 40 101 1 0 25 chain 528565 chr12 133275309 + 28760230 28766054 L1PA2 6032 + 2 6030 1892 168 0 1 720 0 136 1238 2 1 2349 0 65 708 0 2 305 0 1 334 chain 41122 chr12 133275309 + 28788171 28788917 L1MA3 4352 + 3589 4328 33898 95 23 22 199 14 41 116 102 78 89 5 1 28 2 0 23 2 1 6 1 0 22 5 4 14 chain 2856 chr12 133275309 + 28791632 28791662 MLT2B4 540 + 510 540 101198 30 chain 79473 chr12 133275309 + 28836277 28837168 L1PA5 6144 + 4788 5680 21749 730 0 1 161 chain 8973 chr12 133275309 + 28839749 28839860 L1PA15 4387 + 3259 3373 72621 7 0 3 104 chain 21349 chr12 133275309 + 28897297 28897643 THE1B 368 + 0 368 54704 40 0 15 20 2 0 97 1 0 26 49 59 111 chain 143298 chr12 133275309 + 28922911 28924735 L1PBa 3878 + 1730 3548 12833 252 12 4 73 0 4 462 2 3 178 2 0 3 2 0 29 8 9 243 0 2 65 3 1 151 0 2 16 3 1 320 chain 26676 chr12 133275309 + 28926651 28926986 THE1A 353 + 0 333 46721 111 1 0 190 1 0 32 chain 10408 chr12 133275309 + 29001378 29001593 L1PA8 5853 + 5630 5836 69597 21 29 0 19 14 27 39 6 5 19 2 1 51 1 10 14 chain 47032 chr12 133275309 + 29017743 29018271 L1PA2 6032 + 4794 5320 30645 95 1 0 124 1 0 307 chain 4716 chr12 133275309 + 29084442 29084494 L1MB3 1562 + 1067 1119 87160 52 chain 496111 chr12 133275309 + 29092379 29098318 L1PA6 6164 + 0 6160 3266 63 1 2 112 1 2 284 5 4 33 11 10 164 0 1 116 4 21 211 6 5 23 0 1 422 0 4 339 2 3 271 0 74 10 0 118 40 0 1 862 0 1 939 0 1 354 0 9 815 0 1 340 4 0 498 3 0 6 chain 14504 chr12 133275309 + 29117234 29117537 Tigger3a 397 + 39 367 62894 32 28 87 134 30 0 35 31 27 13 chain 5359 chr12 133275309 + 29120790 29120867 MADE1 96 + 0 90 83914 8 2 0 29 0 15 38 chain 28795 chr12 133275309 + 29127317 29127619 AluYg6 310 + 0 302 43635 302 chain 2342 chr12 133275309 + 29128443 29128654 MER21C 908 + 26 119 104501 14 136 9 17 23 32 21 chain 119002 chr12 133275309 + 29256462 29257890 LTR12C 1709 + 2 1709 15699 301 7 8 17 0 3 7 3 0 312 0 278 184 1 0 4 4 2 105 1 5 399 1 0 82 chain 70731 chr12 133275309 + 29262654 29263638 L1MA3 4352 + 100 1086 23821 6 2 0 50 1 0 18 2 1 401 2 1 65 5 6 124 2 0 90 3 1 12 1 0 132 1 14 7 1 0 53 1 0 5 chain 28504 chr12 133275309 + 29274552 29274955 LTR7 482 + 0 482 44123 54 23 61 109 6 7 33 0 31 19 0 10 37 1 0 121 chain 7921 chr12 133275309 + 29274957 29275050 HERVH-int 3825 + 0 96 75074 34 0 1 14 0 2 45 chain 62965 chr12 133275309 + 29288931 29289840 L1MA1 4479 + 3274 4157 25639 42 5 0 72 4 1 59 3 0 70 3 0 50 9 8 138 1 0 20 0 1 4 1 0 16 1 0 48 0 2 21 1 0 14 2 0 19 1 0 87 1 0 6 3 0 122 5 4 30 10 8 26 1 0 9 0 1 5 chain 23082 chr12 133275309 + 29317144 29317496 Tigger4b 360 + 13 360 52234 87 2 0 43 0 2 53 0 9 8 14 0 87 13 12 12 0 1 33 chain 496100 chr12 133275309 + 29323061 29328630 L1PA4 6152 + 295 5879 3267 34 21 26 889 1 0 472 1 0 1449 1 0 1135 0 1 4 1 0 1377 0 10 125 0 3 59 chain 134055 chr12 133275309 + 29441146 29442631 L1PA3long 6157 + 4672 6157 13649 368 1 0 1066 0 1 50 chain 124993 chr12 133275309 + 29449690 29451165 L1PA7 6471 + 4986 6459 14704 300 3 0 217 0 2 116 8 7 831 chain 37481 chr12 133275309 + 29465828 29466252 L1PA5 6144 + 5715 6139 36415 424 chain 28501 chr12 133275309 + 29473687 29474060 MLT2A1 477 + 0 379 44127 142 0 1 26 1 5 21 16 17 167 chain 5175 chr12 133275309 + 29628966 29629035 MER4B 649 + 327 411 84793 17 0 15 52 chain 18712 chr12 133275309 + 29636544 29636761 AluSc 308 + 7 224 57885 217 chain 174999 chr12 133275309 + 29640325 29642613 L1PBa1 4058 + 36 2377 10833 11 13 10 73 0 20 20 1 0 59 2 3 5 3 0 168 5 14 12 3 1 159 27 55 462 1 0 74 0 2 262 8 5 190 3 8 18 1 0 80 0 1 259 0 1 92 2 0 20 0 1 6 1 0 143 7 9 98 chain 35551 chr12 133275309 + 29642956 29643441 L1PB1 5432 + 4622 5115 37685 7 0 4 70 1 3 252 0 1 84 16 12 39 0 4 5 1 2 10 chain 23582 chr12 133275309 + 29663959 29664214 AluYa5 310 + 54 309 51460 255 chain 30509 chr12 133275309 + 29740211 29740669 MLT2A1 477 + 0 477 41558 142 0 1 18 8 12 99 23 0 9 0 23 81 12 0 6 6 0 9 0 33 24 1 0 20 chain 6182 chr12 133275309 + 29787036 29787143 MER31A 484 + 8 116 80415 42 16 18 28 1 0 20 chain 6592 chr12 133275309 + 29788420 29788538 MER45R 1085 + 323 462 79008 17 1 3 61 14 33 25 chain 29945 chr12 133275309 + 29790571 29790976 L1PA8 5853 + 5395 5800 42106 23 0 6 140 1 0 44 2 0 71 1 0 63 2 1 12 3 0 6 0 2 37 chain 3530 chr12 133275309 + 29805833 29805874 Tigger3c 601 + 53 94 95023 41 chain 543787 chr12 133275309 + 29809727 29815750 L1PA3long 6157 + 0 6156 1094 151 3 4 585 0 2 35 1 129 133 0 1 2838 0 1 2277 chain 20577 chr12 133275309 + 29822243 29822465 L1PA3long 6157 + 4961 5183 55673 222 chain 88507 chr12 133275309 + 29822465 29823435 L1PA3long 6157 + 5187 6157 19944 970 chain 122316 chr12 133275309 + 29827076 29828480 L1PA7 6471 + 5054 6459 15141 567 1 0 79 0 2 757 chain 145266 chr12 133275309 + 29833071 29834672 L1PA2 6032 + 4426 6031 12670 756 0 4 845 chain 532098 chr12 133275309 + 29848467 29855000 L1PA5 6144 + 0 6144 1745 242 0 1 27 0 1 490 0 1 301 5 6 166 4 5 2114 21 10 340 0 1 923 3 0 264 0 1 276 0 1 237 0 2 298 0 1 53 387 0 203 0 1 179 chain 10220 chr12 133275309 + 29906906 29907045 L1PA16 3655 + 3449 3586 69972 6 0 1 122 3 0 8 chain 537905 chr12 133275309 + 29909925 29916045 L1PA5 6144 + 3 6137 1454 118 0 14 306 0 1 1909 0 2 811 1 0 2470 2 0 176 0 1 80 1 0 246 chain 3062 chr12 133275309 + 29931918 29931952 MER47C 97 + 33 67 99208 34 chain 46559 chr12 133275309 + 29950141 29950701 L1PA7 6471 + 5905 6470 30822 400 8 0 8 0 8 126 0 7 5 2 0 11 chain 70877 chr12 133275309 + 29953668 29954465 L1PA3long 6157 + 5352 6151 23782 32 1 0 411 0 2 26 0 1 327 chain 154580 chr12 133275309 + 29975452 29977223 L1P1 4361 + 2541 4328 12081 713 0 2 60 0 1 384 15 16 146 0 14 274 1 0 154 1 0 23 chain 31283 chr12 133275309 + 29988509 29988952 MLT2A1 477 + 0 477 40909 168 5 2 21 11 16 8 5 0 86 0 3 79 17 51 43 chain 26638 chr12 133275309 + 30056080 30056480 LTR7 482 + 0 471 46775 51 0 2 6 2 0 10 8 46 106 1 2 37 1 32 127 16 17 35 chain 295932 chr12 133275309 + 30056493 30060227 HERVH-int 3825 + 0 3825 6953 315 28 29 21 3 4 102 0 60 16 1 0 23 1 0 7 1 0 22 0 30 14 26 86 31 69 9 10 1 0 213 1 0 826 9 8 457 0 1 802 0 3 319 40 41 376 chain 12528 chr12 133275309 + 30074509 30074684 L1PA8 5853 + 5646 5817 65932 32 2 1 14 1 0 47 2 1 19 1 0 57 chain 35710 chr12 133275309 + 30121418 30121958 LTR1 825 + 311 825 37597 30 61 51 48 3 0 24 3 0 76 1 0 68 4 0 100 5 0 117 chain 109917 chr12 133275309 + 30156688 30158333 LTR12C 1709 + 0 1709 17087 266 0 1 67 0 11 305 0 278 184 9 6 106 0 4 154 329 0 14 0 102 211 chain 88472 chr12 133275309 + 30173661 30174718 MER11C 1089 + 0 1073 19952 146 0 6 98 10 11 52 0 4 373 0 4 43 0 1 335 chain 85816 chr12 133275309 + 30221956 30223004 MER11C 1089 + 0 1059 20485 250 6 7 56 0 4 216 6 7 148 0 4 45 0 1 321 chain 45523 chr12 133275309 + 30226522 30227297 L1PB3 3668 + 2880 3595 31298 108 2 0 17 3 0 77 0 2 10 0 3 86 1 0 66 31 33 8 1 0 99 8 7 79 59 7 18 1 0 3 1 0 25 3 1 37 7 3 13 0 1 12 chain 10885 chr12 133275309 + 30232296 30232431 LTR24 460 + 325 460 68719 135 chain 4700 chr12 133275309 + 30247549 30247837 MSTD 398 + 77 386 87273 48 203 216 14 4 12 19 chain 4955 chr12 133275309 + 30260280 30260343 L1MA2 4263 + 5 68 85864 17 1 0 11 0 1 34 chain 117781 chr12 133275309 + 30262950 30264453 THE1A-int 1579 + 0 1579 15919 366 6 5 70 6 7 54 1 0 205 33 110 762 chain 120170 chr12 133275309 + 30279391 30281273 THE1A-int 1579 + 0 1574 15511 168 14 17 205 13 14 19 316 2 77 8 7 154 13 13 720 1 3 157 0 1 17 chain 353556 chr12 133275309 + 30289976 30294029 L1PA5 6144 + 1819 5870 5873 166 0 1 207 0 2 299 0 1 662 0 12 197 23 3 153 10 11 1743 0 1 593 chain 25924 chr12 133275309 + 30338038 30338339 L1PA4 6152 + 5850 6152 47829 188 0 1 113 chain 8001 chr12 133275309 + 30390505 30390678 LOR1-int 1871 + 88 255 74886 77 60 54 36 chain 50654 chr12 133275309 + 30419654 30420255 L1PA7 6471 + 5860 6461 29326 601 chain 5186 chr12 133275309 + 30441204 30441288 LTR38 553 + 15 110 84746 28 1 0 16 5 17 34 chain 168224 chr12 133275309 + 30474690 30477141 L1MA2 4263 + 1601 4105 11206 113 0 1 146 41 44 42 0 4 16 1 0 120 0 4 78 10 4 59 1 10 60 0 1 54 1 6 154 0 1 8 0 15 21 2 1 45 0 1 35 2 0 57 5 10 63 11 12 124 0 2 169 0 1 87 5 6 16 0 1 40 10 12 89 1 0 30 0 4 165 3 0 31 26 22 36 1 16 25 1 0 147 3 0 149 1 0 6 2 1 74 24 19 17 4 10 20 chain 22137 chr12 133275309 + 30528696 30528993 L1PA8 5853 + 5564 5853 53646 45 2 0 69 2 1 14 1 0 42 2 0 9 1 0 16 1 0 93 chain 6749 chr12 133275309 + 30558418 30558744 MER76 683 + 341 670 78479 44 79 92 15 141 131 47 chain 133245 chr12 133275309 + 30561450 30562998 LTR12C 1709 + 0 1709 13723 309 0 1 4 1 0 177 0 1 207 0 159 253 1 0 5 3 1 107 0 4 481 chain 546690 chr12 133275309 + 30588353 30594511 L1PA4 6152 + 0 6151 929 576 1 0 132 12 5 2452 1 0 20 0 1 787 8 9 683 1 0 1343 0 1 142 chain 29542 chr12 133275309 + 30603357 30603846 L1PA16 3655 + 2280 2790 42556 117 2 1 122 1 2 138 72 87 18 5 11 14 chain 362248 chr12 133275309 + 30603861 30608559 L1PA7 6471 + 8 6456 5779 118 1 11 59 12 11 23 73 72 103 10 0 7 2 0 61 1 0 9 2 0 95 3 0 165 0 5 101 2 0 5 5 10 127 6 5 106 1 2 104 1 7 34 0 1723 112 4 17 228 0 1 200 7 2 460 0 2 148 1 7 145 8 9 164 0 1 203 4 8 944 2 0 269 18 19 257 0 1 112 1 0 4 0 1 171 chain 24828 chr12 133275309 + 30627376 30627648 L1PA2 6032 + 5757 6031 49545 102 0 2 170 chain 9445 chr12 133275309 + 30761733 30761983 L1MB8 1703 + 1499 1678 71614 5 0 1 56 0 1 15 93 28 23 5 0 34 3 0 16 chain 153615 chr12 133275309 + 30776014 30778051 MER4-int 2692 + 631 2692 12137 60 0 5 27 4 3 78 0 2 50 0 1 516 0 38 54 3 4 130 0 4 149 1 3 135 0 2 156 1 4 92 36 5 48 0 1 65 1 0 5 7 10 5 1 0 217 0 2 9 6 0 181 chain 33711 chr12 133275309 + 30778059 30778528 MER4A1 472 + 0 472 38918 15 8 10 159 27 28 260 chain 34970 chr12 133275309 + 30784240 30784739 LTR19A 502 + 0 481 38038 65 4 1 44 10 7 120 6 5 62 1 0 149 24 14 14 chain 24990 chr12 133275309 + 30786771 30787056 AluYa5 310 + 34 307 49299 98 1 0 160 11 0 15 chain 40029 chr12 133275309 + 30837090 30837592 LTR10F 562 + 0 562 34635 173 1 22 23 0 14 9 0 24 292 0 1 4 chain 77681 chr12 133275309 + 30850964 30851917 LTR13_ 950 + 0 950 22165 268 1 3 336 14 3 36 3 9 295 chain 62781 chr12 133275309 + 30856823 30857522 L1PA4 6152 + 5202 5902 25689 46 0 1 653 chain 20492 chr12 133275309 + 30857522 30857748 L1PA4 6152 + 5903 6129 55790 226 chain 5195 chr12 133275309 + 30909297 30909358 LTR15 485 + 425 485 84703 51 1 0 9 chain 12450 chr12 133275309 + 30934575 30934763 MER30 238 + 39 238 66070 43 0 4 29 4 0 12 16 27 84 chain 13764 chr12 133275309 + 30944526 30944770 L1MA8 2339 + 1793 2027 63930 47 21 17 67 0 1 6 4 0 9 14 12 61 1 0 14 chain 22332 chr12 133275309 + 31027082 31027416 LTR3A 482 + 26 361 53363 83 17 18 17 0 1 83 31 32 5 2 0 96 chain 17010 chr12 133275309 + 31071774 31072068 LTR12C 1709 + 932 1193 59794 180 0 1 4 31 1 15 30 26 34 chain 11359 chr12 133275309 + 31117416 31117564 HERVE-int 4064 + 2118 2264 67996 83 0 1 9 3 0 53 chain 11698 chr12 133275309 + 31118893 31119042 HERVE-int 4064 + 2118 2264 67401 93 3 0 53 chain 9464 chr12 133275309 + 31120538 31120678 HERVE-int 4064 + 2118 2264 71577 55 0 9 27 18 15 40 chain 49707 chr12 133275309 + 31121135 31121738 HERVE-int 4064 + 2118 2717 29683 93 3 0 492 4 3 11 chain 50493 chr12 133275309 + 31123027 31123626 HERVE-int 4064 + 2122 2717 29383 89 3 0 127 1 0 379 chain 540985 chr12 133275309 + 31163075 31169091 L1PA3long 6157 + 0 6157 1280 70 0 1 81 0 1 211 0 1 412 1 129 1727 0 5 1379 0 1 342 0 4 1638 7 0 8 1 8 139 chain 146326 chr12 133275309 + 31190658 31192368 L1PA5 6144 + 4407 6132 12588 315 0 1 264 6 3 629 5 5 130 3 20 358 chain 31407 chr12 133275309 + 31209808 31210162 L1PA5 6144 + 5780 6134 40807 354 chain 52102 chr12 133275309 + 31273749 31274331 L1PA4 6152 + 5569 6151 28845 582 chain 4630 chr12 133275309 + 31303758 31303810 U13_ 108 + 47 99 87642 52 chain 23954 chr12 133275309 + 31366795 31367085 AluY 311 + 1 309 50858 16 0 17 231 0 1 43 chain 3580 chr12 133275309 + 31379888 31379927 LTR41 747 + 696 735 94587 39 chain 6911 chr12 133275309 + 31396397 31396501 U6 107 + 8 107 77916 22 3 1 18 3 0 58 chain 65234 chr12 133275309 + 31483343 31485552 HSMAR1 1287 + 0 1285 25124 67 1 0 27 299 0 74 0 4 6 4 9 14 1 0 7 1006 367 24 3 0 8 0 3 412 0 3 107 1 0 103 0 3 12 1 3 32 chain 3311 chr12 133275309 + 31494662 31494697 MER51A 677 + 199 234 96917 35 chain 154633 chr12 133275309 + 31537400 31542005 L1MA3 4352 + 24 4037 12078 13 1 0 86 1 0 33 1 0 17 66 64 51 0 2 23 26 10 249 19 0 127 2 6 18 18 6 42 2 0 22 2 1 74 19 16 41 11 91 63 3 2 29 1 0 22 0 1 22 16 13 52 0 5 12 2121 1490 50 4 5 13 0 2 37 4 6 42 1 0 6 23 20 33 1 2 4 1 0 101 1 0 16 4 1 211 0 6 79 1 0 20 2 0 12 9 10 40 0 3 45 0 4 67 0 1 336 0 1 137 chain 3793 chr12 133275309 + 31567087 31567137 MER65A 464 + 412 464 92907 5 0 2 45 chain 9816 chr12 133275309 + 31588470 31588679 MER2 342 + 80 291 70788 87 10 11 26 61 62 25 chain 42329 chr12 133275309 + 31608082 31608624 LTR10E 629 + 0 618 33171 18 2 1 145 0 2 48 5 81 157 0 1 115 2 0 50 chain 3796 chr12 133275309 + 31619920 31619967 LTR54 533 + 486 533 92874 47 chain 5256 chr12 133275309 + 31628620 31628688 MER92B 628 + 0 68 84416 68 chain 22373 chr12 133275309 + 31683442 31683804 THE1B 368 + 0 368 53308 177 58 65 64 14 13 49 chain 11381 chr12 133275309 + 31705611 31706380 MER83 447 + 0 405 67949 56 0 13 33 209 150 40 387 68 39 0 1 5 chain 74500 chr12 133275309 + 31707809 31708815 MER11A 1151 + 0 1144 22963 55 0 99 76 1 0 62 12 8 27 0 2 59 0 1 54 0 1 92 0 7 6 1 0 59 18 1 64 6 9 8 1 0 43 0 2 8 0 4 70 0 20 7 1 15 49 0 9 24 2 3 141 1 0 59 chain 3984 chr12 133275309 + 31730202 31730312 MER65D 500 + 2 114 91560 21 10 11 18 30 31 31 chain 45135 chr12 133275309 + 31758265 31758871 LTR10F 562 + 0 562 31503 33 0 4 39 0 5 42 28 0 108 25 0 331 chain 2058 chr12 133275309 + 31758379 31758403 LTR10F 562 + 207 231 96647 24 chain 2123 chr12 133275309 + 31758515 31758540 LTR10F 562 + 147 172 77162 25 chain 28515 chr12 133275309 + 31768207 31768609 MER1A 529 + 98 503 44095 109 20 21 14 0 1 217 14 15 28 chain 22417 chr12 133275309 + 31794100 31794408 AluY 311 + 1 307 53243 5 0 2 125 20 19 125 2 4 18 5 0 8 chain 56710 chr12 133275309 + 31808013 31809078 MER4E 760 + 0 760 27357 26 0 1 124 41 44 74 1 0 100 0 2 75 2 1 176 309 0 137 chain 120183 chr12 133275309 + 31828681 31831292 L1PB2 3958 + 2204 3838 15509 277 11 0 82 322 0 314 1 0 47 1 0 170 647 22 126 0 1 66 2 0 51 2 1 16 30 25 27 0 1 9 2 0 12 4 0 166 1 0 64 6 5 65 13 11 13 1 0 63 chain 18778 chr12 133275309 + 31847620 31847853 MER41A 554 + 312 554 57813 82 0 5 21 0 4 130 chain 3594 chr12 133275309 + 31848698 31848740 MER41-int 2638 + 128 170 94483 42 chain 12573 chr12 133275309 + 31851849 31852002 MER41-int 2638 + 2481 2634 65847 153 chain 2671 chr12 133275309 + 31873654 31873712 MER34A1 583 + 81 137 102600 15 9 5 9 1 3 24 chain 49352 chr12 133275309 + 31882705 31883387 LTR12 884 + 0 882 29818 24 1 0 239 0 91 23 2 0 67 4 1 125 24 131 22 5 5 21 1 9 124 chain 27478 chr12 133275309 + 31885097 31885459 L1PA8 5853 + 5499 5853 45603 33 1 0 32 1 0 45 2 0 67 6 5 7 1 0 52 2 1 19 1 0 93 chain 36944 chr12 133275309 + 31887197 31887704 LOR1a 498 + 0 498 36779 55 0 3 5 16 1 44 1 0 263 11 0 69 0 15 43 chain 4419 chr12 133275309 + 31892784 31892835 MSTA 426 + 375 426 88789 51 chain 48843 chr12 133275309 + 31947582 31948245 MER11A 1151 + 6 762 29996 49 0 99 24 8 0 52 1 0 64 4 0 32 0 4 110 0 1 97 0 1 144 10 12 63 1 0 4 chain 30729 chr12 133275309 + 31957394 31957882 LTR7B 505 + 2 505 41367 103 0 10 60 44 20 19 14 38 26 0 2 59 9 14 9 1 0 79 14 13 51 chain 36305 chr12 133275309 + 32022006 32022995 LTR9B 643 + 5 643 37210 62 348 2 4 0 1 31 0 8 88 4 7 17 7 8 38 1 0 65 6 7 70 44 39 51 11 0 10 5 13 15 8 0 47 17 15 40 chain 29010 chr12 133275309 + 32028014 32028528 LTR10E 629 + 0 620 43306 94 3 119 83 2 1 27 6 5 30 18 17 128 83 76 40 chain 5700 chr12 133275309 + 32032319 32032384 MER89 557 + 407 472 82341 65 chain 22209 chr12 133275309 + 32048797 32049088 MER1B 344 + 45 339 53540 221 12 15 58 chain 6323 chr12 133275309 + 32050959 32051041 Tigger3b 1229 + 647 729 79920 82 chain 3965 chr12 133275309 + 32053457 32053503 LTR44 473 + 418 464 91660 46 chain 36542 chr12 133275309 + 32054196 32054616 LTR3 431 + 11 431 37049 420 chain 45812 chr12 133275309 + 32054718 32055272 MER41A 554 + 0 554 31159 554 chain 60110 chr12 133275309 + 32056398 32057512 MER4E1 777 + 0 777 26340 229 4 5 232 329 0 76 12 8 72 1 0 37 4 0 118 chain 51115 chr12 133275309 + 32058931 32059664 MER4E 760 + 0 736 29190 145 51 53 25 3 0 42 1 0 96 0 2 83 1 0 72 0 6 9 9 8 29 1 0 166 chain 24442 chr12 133275309 + 32093616 32093954 THE1C 375 + 0 355 50110 135 0 4 41 13 7 42 5 25 96 1 0 5 chain 75412 chr12 133275309 + 32099510 32100478 LTR5_Hs 974 + 0 974 22743 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 22837 chr12 133275309 + 32110748 32110997 L1PA3long 6157 + 5908 6157 52607 249 chain 10560 chr12 133275309 + 32191377 32191571 Tigger1 2417 + 0 200 69306 11 3 18 12 0 6 6 17 1 64 1 4 71 2 0 7 chain 23634 chr12 133275309 + 32194197 32194599 L1MA9 1812 + 22 442 51379 9 4 0 37 2 0 144 8 13 36 3 6 17 2 10 55 34 43 37 1 0 13 chain 129176 chr12 133275309 + 32219838 32221253 L1PA3long 6157 + 4741 6157 14122 1273 0 1 142 chain 6327 chr12 133275309 + 32235997 32236077 Tigger1 2417 + 176 258 79906 49 0 1 27 0 1 4 chain 43890 chr12 133275309 + 32275524 32276054 LTR17 781 + 255 781 32196 72 0 1 80 16 0 200 0 10 155 0 1 7 chain 27573 chr12 133275309 + 32276350 32276671 LTR17 781 + 0 326 45483 116 0 13 169 8 0 28 chain 6767 chr12 133275309 + 32279111 32279192 L1MB8 1703 + 1507 1588 78422 81 chain 15617 chr12 133275309 + 32315666 32316271 MER47A 366 + 0 295 61512 17 66 69 92 312 0 17 1 0 100 chain 24936 chr12 133275309 + 32330291 32330569 L1PA5 6144 + 5851 6129 49375 278 chain 12729 chr12 133275309 + 32413131 32413287 L1PA7 6471 + 6311 6467 65566 4 0 1 141 1 0 10 chain 132161 chr12 133275309 + 32472108 32473651 LTR12C 1709 + 0 1709 13810 309 0 1 4 1 0 439 0 161 197 1 0 6 2 0 107 0 4 450 0 4 27 chain 117651 chr12 133275309 + 32525490 32526906 LTR12C 1709 + 0 1709 15948 309 0 1 4 1 0 186 0 2 197 0 159 253 9 6 103 4 8 248 0 131 102 chain 34718 chr12 133275309 + 32594113 32594637 MER1A 529 + 19 529 38214 18 4 0 17 38 39 27 2 0 335 25 16 58 chain 12137 chr12 133275309 + 32613311 32613470 HSMAR2 1300 + 1 159 66595 62 2 1 95 chain 43292 chr12 133275309 + 32651873 32652406 MLT2A2 560 + 11 560 32580 181 0 3 8 0 1 105 0 1 96 0 11 143 chain 74240 chr12 133275309 + 32798559 32799560 L1PB2 3958 + 2872 3828 23021 52 1 0 63 9 0 98 0 1 276 0 3 12 6 0 62 40 12 94 9 8 64 1 0 64 1 0 72 2 0 22 1 0 11 0 1 41 chain 16627 chr12 133275309 + 32817128 32817367 L1PA16 3655 + 2439 2679 60239 111 0 3 62 16 0 8 0 15 37 1 0 4 chain 19981 chr12 133275309 + 32856515 32856763 L1PA5 6144 + 5896 6144 56409 92 10 10 146 chain 1250 chr12 133275309 + 32914130 32914302 L1MB5 1630 + 1186 1361 57346 32 1 4 139 chain 123401 chr12 133275309 + 32914685 32916267 THE1A-int 1579 + 0 1579 14963 146 13 1 121 1 2 380 0 1 4 0 2 467 19 23 422 0 1 9 chain 22968 chr12 133275309 + 32916267 32916619 THE1A 353 + 0 353 52409 13 2 0 34 0 1 60 32 30 141 6 10 64 chain 1119 chr12 133275309 + 32916619 32916773 L1MB5 1630 + 1382 1534 57346 10 1 0 80 2 0 8 0 3 5 13 11 35 chain 40034 chr12 133275309 + 32929012 32929614 PRIMA4_LTR 623 + 21 623 34631 70 0 1 96 4 0 119 0 56 21 0 3 10 58 0 38 5 6 84 0 1 97 chain 20301 chr12 133275309 + 32954810 32955097 L1PA8 5853 + 5572 5853 56015 36 2 0 68 19 17 47 2 1 22 1 0 90 chain 548196 chr12 133275309 + 32956152 32962330 L1PA4 6152 + 0 6151 849 25 1 0 435 30 0 1857 0 3 1911 13 14 1906 chain 38115 chr12 133275309 + 32983333 32983833 LTR19A 502 + 0 502 35978 65 2 1 171 6 5 59 1 0 159 10 11 17 0 4 10 chain 42911 chr12 133275309 + 32998189 32998659 L1PA3long 6157 + 5687 6157 32829 470 chain 11656 chr12 133275309 + 32998963 32999186 L1PB1 5432 + 5221 5422 67468 15 1 0 45 1 0 12 16 5 10 1 0 19 9 6 13 2 0 24 1 0 21 1 0 13 1 0 18 chain 140091 chr12 133275309 + 33013280 33014858 L1PA4 6152 + 3755 5334 13090 643 0 2 229 1 0 247 9 8 287 0 1 162 chain 25050 chr12 133275309 + 33016200 33016566 THE1B 368 + 0 368 49189 168 1 0 24 5 1 7 1 0 98 23 31 39 chain 5888 chr12 133275309 + 33041737 33041817 MADE1 96 + 0 96 81528 43 1 17 36 chain 77001 chr12 133275309 + 33055334 33056382 MER11C 1089 + 0 1063 22315 247 0 9 57 0 4 69 1 0 177 42 41 86 1 5 4 1 0 38 0 1 125 0 1 56 1 0 13 2 1 103 0 1 25 chain 21511 chr12 133275309 + 33068217 33068478 L1PBa 3878 + 1082 1343 54494 261 chain 109388 chr12 133275309 + 33075164 33076662 LTR12C 1709 + 0 1702 17127 212 5 7 72 4 5 42 0 43 76 19 17 130 11 13 43 0 119 58 1 0 42 2 0 6 0 1 4 1 0 181 0 47 90 27 20 390 12 14 70 chain 66396 chr12 133275309 + 33097328 33098370 L1PB1 5432 + 4412 5424 24846 85 0 7 92 7 9 23 3 0 77 0 2 53 7 16 270 1 2 4 1 0 51 5 0 13 13 0 18 1 0 13 30 23 50 2 1 16 1 0 43 1 0 23 18 9 15 8 5 14 3 1 23 1 0 21 4 3 10 1 0 16 1 0 4 chain 111931 chr12 133275309 + 33108456 33109789 L1P2 5180 + 1836 3177 16824 265 0 1 101 3 5 351 0 1 187 0 1 420 0 3 6 chain 73878 chr12 133275309 + 33152916 33153913 MER11A 1151 + 9 1136 23125 46 0 99 45 2 0 93 12 8 24 0 2 62 0 1 39 1 2 13 0 1 87 7 0 9 0 7 12 1 0 303 3 0 5 0 35 44 11 13 126 7 6 45 chain 466312 chr12 133275309 + 33163680 33170208 L1PA7 6471 + 699 6447 3954 147 1 0 555 6 4 243 4 14 111 6 5 10 0 1 4 1 0 838 2 1 468 0 4 161 0 3 50 794 0 34 4 5 140 1 0 20 0 1 63 0 5 271 0 1 136 1 0 423 0 2 103 40 0 84 0 2 346 0 1 29 1 2 169 7 25 103 1 8 330 1 0 54 0 2 270 1 0 277 0 5 218 chain 3372 chr12 133275309 + 33188868 33188909 MLT1D 503 + 462 503 96374 41 chain 54167 chr12 133275309 + 33199084 33199799 LTR12 884 + 0 860 28163 25 1 0 30 0 107 194 0 22 283 13 0 67 13 43 89 chain 20363 chr12 133275309 + 33199823 33200059 LTR12_ 688 + 452 688 55935 236 chain 548595 chr12 133275309 + 33227570 33233706 L1PA3long 6157 + 6 6154 831 603 5 1 264 0 2 1383 0 10 123 0 4 301 1 0 352 5 6 133 0 1 150 1 0 2815 chain 123100 chr12 133275309 + 33244058 33245429 L1PA3long 6157 + 3284 4682 15003 229 0 1 525 0 26 617 chain 15050 chr12 133275309 + 33258494 33258837 THE1C 375 + 0 334 62204 27 1 0 20 72 70 13 2 1 48 25 27 108 13 6 14 chain 33238 chr12 133275309 + 33258880 33259352 THE1C-int 1605 + 2 483 39309 23 0 3 102 1 0 88 0 1 23 1 0 89 0 1 23 2 1 89 16 23 15 chain 42528 chr12 133275309 + 33270980 33271450 L1PA3long 6157 + 4561 5031 33045 470 chain 47151 chr12 133275309 + 33307163 33307807 MER4A1_ 611 + 0 611 30593 119 21 7 66 20 0 405 0 1 13 chain 5392 chr12 133275309 + 33309103 33309172 LTR48B 642 + 540 608 83737 4 1 0 64 chain 529390 chr12 133275309 + 33331933 33337873 L1PA3long 6157 + 81 6156 1862 71 17 18 572 1 0 34 0 128 1530 0 3 677 0 1 844 3 4 901 0 1 419 0 1 538 0 1 328 1 0 4 chain 6226 chr12 133275309 + 33347472 33347564 L1PA7 6471 + 4258 4348 80252 16 10 8 66 chain 174100 chr12 133275309 + 33347564 33349676 L1PA7 6471 + 4351 6459 10892 604 2 1 152 3 1 87 1 0 48 1 0 133 0 3 239 1 2 273 0 2 119 5 0 121 0 1 128 17 15 40 0 1 138 chain 22518 chr12 133275309 + 33349694 33349970 MER41A 554 + 176 466 53098 172 0 1 42 0 12 27 0 1 35 chain 185837 chr12 133275309 + 33412611 33414761 L1P1 4361 + 906 3063 10305 12 0 1 289 10 11 1509 0 5 330 chain 512293 chr12 133275309 + 33462456 33468879 L1PA7 6471 + 0 6470 2654 121 0 27 94 5 15 115 15 1 27 0 3 25 0 8 13 6 11 211 29 30 51 1 0 461 0 4 538 1 0 4 0 1 404 0 2 353 0 2 120 21 2 285 0 1 336 6 20 203 1 0 77 6 5 41 5 6 1052 0 8 93 1 4 12 2 0 169 1 0 659 0 3 351 0 1 307 9 5 184 3 0 5 chain 5670 chr12 133275309 + 33477903 33477973 MLT1A1 405 + 297 367 82470 70 chain 513254 chr12 133275309 + 33492267 33499086 L1PA7 6471 + 0 6468 2611 11 2 0 279 13 12 587 20 20 651 0 2 540 0 2 5 2 0 420 9 10 47 0 1 45 10 0 67 0 4 485 64 8 157 0 8 24 0 1 98 10 9 9 0 3 44 0 4 17 6 7 20 1 0 405 1 0 77 0 3 7 311 9 114 27 0 105 12 15 401 0 1 114 2 1 448 2 1 126 1 0 4 0 1 36 0 1 148 0 4 130 0 1 110 0 3 458 10 21 127 chain 519037 chr12 133275309 + 33520769 33526864 L1PA6 6164 + 23 6161 2316 213 0 2 279 0 2 50 1 0 282 0 2 570 8 13 298 0 1 477 0 2 117 1 2 58 0 4 193 0 3 236 0 7 2284 0 9 40 0 5 492 0 1 496 chain 14296 chr12 133275309 + 33540028 33540213 L1PA7 6471 + 6261 6455 63204 116 2 1 24 0 10 43 chain 12795 chr12 133275309 + 33546524 33546693 L1PA16 3655 + 3414 3584 65449 67 0 4 93 3 0 6 chain 24564 chr12 133275309 + 33550205 33550564 THE1B 368 + 0 368 49917 44 5 20 105 29 23 176 chain 113229 chr12 133275309 + 33550564 33552093 THE1B-int 1605 + 0 1595 16643 385 9 19 28 8 33 54 1 0 613 31 56 25 9 15 195 4 5 71 1 0 4 0 1 91 chain 25298 chr12 133275309 + 33552112 33552454 THE1B 368 + 10 368 48787 34 0 15 71 0 1 41 1 0 20 2 0 91 3 6 79 chain 19331 chr12 133275309 + 33608967 33609323 THE1B 368 + 2 365 57202 106 26 27 41 36 33 4 0 1 10 8 16 66 7 6 30 0 1 22 chain 6660 chr12 133275309 + 33612506 33612584 L1PA7 6471 + 5524 5602 78772 78 chain 43760 chr12 133275309 + 33612594 33613116 L1PA7 6471 + 5614 6136 32279 522 chain 27733 chr12 133275309 + 33613116 33613449 L1PA7 6471 + 6137 6470 45272 333 chain 19933 chr12 133275309 + 33619500 33619820 THE1B 368 + 2 340 56475 106 15 13 48 1 0 30 22 44 63 3 2 32 chain 5112 chr12 133275309 + 33649277 33649628 MLT1A0 366 + 0 366 85100 26 136 148 20 68 70 17 48 49 36 chain 248246 chr12 133275309 + 33737922 33740603 L1PA2 6032 + 3352 6032 8284 1820 0 1 853 2 0 6 chain 469528 chr12 133275309 + 33772866 33778202 L1PA4 6152 + 1 5340 3871 691 1 0 686 0 2 1790 1 0 6 2 1 2121 0 4 38 chain 67161 chr12 133275309 + 33793659 33794384 L1PA2 6032 + 5307 6032 24658 725 chain 27533 chr12 133275309 + 33796467 33796833 THE1C-int 1605 + 0 422 45546 16 6 7 86 0 55 258 chain 97308 chr12 133275309 + 33837856 33838984 L1PA5 6144 + 5016 6143 18619 278 1 0 78 6 7 609 1 0 155 chain 536412 chr12 133275309 + 33848132 33854151 L1PA3long 6157 + 2 6156 1543 151 1 2 621 0 128 370 1 2 1912 0 1 69 0 4 1816 0 1 228 1 0 849 chain 21375 chr12 133275309 + 33876296 33876549 AluSp 311 + 50 303 54670 253 chain 119363 chr12 133275309 + 33880782 33882449 L1PA10 4194 + 2478 4150 15634 42 14 16 75 13 11 30 6 5 49 39 41 162 0 7 43 1 0 4 9 8 152 0 2 5 2 0 266 1 0 503 0 3 216 3 0 32 chain 14163 chr12 133275309 + 33898347 33898531 L1PA7 6471 + 6283 6466 63363 114 1 2 60 2 0 7 chain 20234 chr12 133275309 + 33898872 33899114 L1PA7 6471 + 6227 6469 56095 242 chain 107187 chr12 133275309 + 33901389 33902624 L1PA5 6144 + 4906 6139 17415 112 1 0 30 0 1 290 0 1 483 6 4 304 1 0 8 chain 176069 chr12 133275309 + 33928285 33930454 L1P1 4361 + 4 2199 10763 117 0 14 684 28 29 390 0 1 340 0 9 415 1 2 194 chain 492511 chr12 133275309 + 33930454 33936197 L1PA5 6144 + 31 5774 3359 189 0 1 386 22 0 383 0 1 194 0 1 247 0 1 486 0 1 369 4 11 5 3 0 191 0 1 543 0 1 128 1 0 88 0 2 650 0 1 1235 0 5 146 0 4 473 chain 24463 chr12 133275309 + 33948784 33949137 THE1B 368 + 0 368 50090 97 9 26 49 10 9 118 0 1 6 8 6 56 chain 21153 chr12 133275309 + 33949137 33949404 THE1B-int 1605 + 0 268 54941 167 4 5 96 chain 58836 chr12 133275309 + 33966222 33967008 LTR12 884 + 0 884 26725 163 6 22 44 2 84 64 2 0 34 0 1 27 8 7 128 3 6 129 1 0 175 chain 21362 chr12 133275309 + 33969711 33969948 L1PA3long 6157 + 5918 6155 54691 237 chain 88621 chr12 133275309 + 33972329 33973423 L1PA7 6471 + 5359 6459 19915 264 0 6 469 0 2 111 0 2 63 12 7 113 0 1 62 chain 13297 chr12 133275309 + 33976822 33976967 L1PA3long 6157 + 5700 5845 64622 145 chain 27714 chr12 133275309 + 33976967 33977278 L1PA3long 6157 + 5846 6157 45296 311 chain 14305 chr12 133275309 + 34031788 34031990 MER30 238 + 26 238 63189 37 2 0 35 10 0 19 0 22 99 chain 42570 chr12 133275309 + 34048058 34048655 LTR14B 630 + 27 624 33022 194 1 2 66 0 7 51 1 8 8 0 14 14 0 9 35 38 0 189 chain 288553 chr12 133275309 + 34049232 34053427 L1PB1 5432 + 32 5404 7178 20 3 2 246 9 13 124 0 1 96 19 20 47 3 1 27 0 3 29 2 0 77 0 1 49 0 15 29 7 124 181 1 0 71 5 7 133 0 1 46 1 0 7 8 0 11 13 5 22 0 1013 40 1 0 9 0 1 122 2 5 107 12 14 91 2 0 87 0 4 463 102 4 17 24 22 239 3 4 44 1 0 5 1 0 255 0 1 198 23 30 270 8 7 134 3 0 49 0 6 301 29 177 8 2 0 53 2 1 16 1 0 44 1 0 10 32 22 14 11 8 13 2 0 22 1 0 21 1 0 13 chain 525072 chr12 133275309 + 34064980 34077155 L1PA4 6152 + 6 6151 2048 454 6 0 1370 6036 0 2367 0 1 955 0 5 36 0 1 106 0 3 73 0 1 630 0 1 142 chain 53720 chr12 133275309 + 34078587 34079216 L1PA5 6144 + 5516 6144 28310 375 2 1 252 chain 511602 chr12 133275309 + 34083247 34089157 L1PA4 6152 + 7 5973 2682 573 1 0 439 0 1 40 0 2 168 0 1 5 1 0 247 0 3 1629 0 1 46 0 3 6 5 29 180 0 10 289 0 4 368 0 1 1249 0 2 177 0 4 167 0 2 320 chain 10101 chr12 133275309 + 34093547 34093663 L1PA2 6032 + 5914 6030 70193 116 chain 191204 chr12 133275309 + 34100120 34102320 HERV17-int 4347 + 2121 4347 10059 141 0 3 108 0 3 764 1 2 404 1 15 65 0 5 716 chain 25467 chr12 133275309 + 34102635 34102956 LTR17 781 + 1 326 48525 6 0 4 110 0 9 30 0 1 138 10 0 27 chain 78518 chr12 133275309 + 34110211 34111112 MER11D 897 + 0 891 21975 281 1 0 290 20 11 309 chain 179453 chr12 133275309 + 34127781 34130520 L1PB1 5432 + 2526 5103 10614 314 4 5 63 15 16 61 1 2 90 15 4 155 0 46 191 18 21 238 22 0 70 198 0 41 7 6 100 7 8 40 1 2 88 0 1 137 0 1 402 8 5 143 1 0 8 3 23 8 8 0 221 12 18 49 chain 463198 chr12 133275309 + 34133341 34139334 L1PA4 6152 + 6 5348 4047 701 1 2 522 0 3 481 0 1 230 1 0 432 0 1 677 0 1 242 307 0 205 39 0 156 0 1 660 312 0 1027 chain 167687 chr12 133275309 + 34144279 34146917 L1PA7 6471 + 4147 6467 11231 122 5 0 99 13 16 103 0 1 33 0 4 173 1 2 76 0 3 78 9 10 28 30 26 37 12 12 184 2 0 5 0 2 14 1 5 35 0 1 4 1 0 394 0 3 93 3 5 117 0 1 179 0 4 94 0 1 95 0 5 2 349 0 7 0 7 240 chain 43991 chr12 133275309 + 34228060 34228569 MER9a1 513 + 0 513 32135 58 0 4 451 chain 35043 chr12 133275309 + 34265544 34266029 LTR7 482 + 0 469 37988 94 0 3 17 52 1 115 0 31 28 0 1 179 chain 300547 chr12 133275309 + 34266044 34270037 HERVH-int 3825 + 0 3825 6812 328 6 5 5 0 1 193 5 0 38 3 2 8 1 0 8 1 0 16 28 0 8 9 26 12 0 20 28 43 0 56 2 1 6 0 1 17 1 0 59 0 3 307 0 2 5 2 0 275 9 0 39 2 1 215 4 31 370 9 14 333 4 7 257 1 5 228 198 40 45 1 0 574 7 9 227 chain 34782 chr12 133275309 + 34273757 34274250 LTR7 482 + 0 475 38172 173 51 0 52 0 1 4 0 31 28 6 7 179 chain 76645 chr12 133275309 + 34309838 34310918 LTR12C 1709 + 330 1709 22406 132 13 12 192 0 1 69 0 237 65 0 88 89 44 13 313 1 0 38 10 11 29 24 27 32 0 2 29 chain 355366 chr12 133275309 + 34430997 34435324 L1P1 4361 + 1 4317 5850 520 2 1 16 2 1 35 1 0 120 7 0 591 0 9 8 22 13 1681 0 1 206 1 0 211 2 1 440 0 2 293 1 0 155 1 0 12 chain 57024 chr12 133275309 + 34446394 34447014 L1PA2 6032 + 5042 5662 27259 620 chain 527879 chr12 133275309 + 34476311 34482455 L1PA3long 6157 + 6 6157 1922 424 0 1 4 1 0 134 0 5 122 4 11 9 7 0 260 0 1 1349 8 7 228 4 0 518 0 1 134 0 1 136 0 2 160 2 3 994 0 1 1646 chain 17395 chr12 133275309 + 34508674 34508886 L1PA2 6032 + 5808 6027 59360 58 8 15 146 chain 71218 chr12 133275309 + 34521108 34522145 MER11C 1089 + 0 1063 23712 240 6 15 58 0 4 217 62 61 95 0 4 5 1 0 38 0 1 28 8 16 15 1 2 42 31 32 190 chain 77315 chr12 133275309 + 34527652 34528900 HERVK11-int 2540 + 1044 2235 22247 21 2 0 65 10 9 23 68 54 12 1 0 11 26 15 36 21 1 208 23 22 189 26 21 104 1 0 183 13 12 205 chain 187439 chr12 133275309 + 34575282 34577533 L1PA4 6152 + 3056 5326 10238 109 0 1 531 0 1 458 1 0 4 0 1 184 3 0 11 7 11 240 1 18 582 1 0 119 chain 66297 chr12 133275309 + 34581172 34581933 L1PA3long 6157 + 5395 6157 24876 193 0 1 568 chain 2065 chr12 133275309 + 34630955 34630977 L1PA3long 6157 + 3946 3968 105956 22 chain 65214 chr12 133275309 + 34630977 34631712 L1PA3long 6157 + 4012 4747 25131 735 chain 503630 chr12 133275309 + 34639544 34645660 L1PA4 6152 + 12 6143 3007 532 5 2 473 0 1 212 4 5 8 0 1 464 0 1 359 1 4 821 0 1 305 0 1 84 0 1 229 1 0 205 1 2 163 4 7 32 0 1 360 0 2 238 0 1 856 1 2 758 chain 153035 chr12 133275309 + 37442902 37445248 L1PA8 5853 + 3747 5816 12175 7 0 1 123 0 1 96 0 14 117 0 2 107 4 3 256 6 0 6 2 9 227 0 13 44 13 15 221 2 4 49 306 0 459 0 1 42 7 6 38 2 0 71 1 0 14 7 6 43 1 0 18 1 0 56 chain 115272 chr12 133275309 + 37449582 37450860 L1PA2 6032 + 4751 6028 16347 1267 1 0 10 chain 22022 chr12 133275309 + 37514566 37514842 AluSp 311 + 20 296 53805 152 0 1 4 1 0 119 chain 4323 chr12 133275309 + 37568126 37568178 MER21B 843 + 20 72 89339 52 chain 5818 chr12 133275309 + 37579429 37579499 L1MB8 1703 + 1468 1538 81840 70 chain 483831 chr12 133275309 + 37681616 37687343 L1PA3long 6157 + 6 5734 3556 345 5 6 924 0 1 1044 2 0 524 1 0 22 0 1 640 1 2 796 1 0 995 1 2 426 chain 499100 chr12 133275309 + 37761707 37767610 L1PA3long 6157 + 6 6154 3160 2119 0 1 199 0 1 491 2 1 4 0 1 96 4 0 759 11 12 254 0 1 28 0 7 19 14 7 85 0 2 188 4 0 137 0 1 216 1 0 40 35 264 372 1 0 216 0 19 608 chain 55379 chr12 133275309 + 37778593 37779227 L1PA3long 6157 + 4146 4780 27749 634 chain 433966 chr12 133275309 + 37786916 37792107 L1PA4 6152 + 6 5187 4687 260 0 1 313 1 0 159 8 7 397 0 2 97 0 2 957 0 2 359 0 1 139 1 6 410 0 5 85 0 1 90 28 0 941 0 1 946 chain 55867 chr12 133275309 + 37824861 37825486 L1PA3long 6157 + 4033 4658 27601 625 chain 43286 chr12 133275309 + 37866398 37866895 L1PA3long 6157 + 3312 3809 32474 497 chain 189942 chr12 133275309 + 37866895 37869111 L1PA3long 6157 + 3927 6157 10120 127 0 1 395 6 20 607 0 1 164 0 1 57 2 0 119 2 1 737 chain 484742 chr12 133275309 + 37892414 37898272 L1PA4 6152 + 12 5880 3540 984 0 7 12 2 1 137 0 2 285 2 1 110 1 0 184 0 2 958 5 0 8 0 5 1342 1 0 201 0 1 6 1 0 895 0 5 143 3 1 578 chain 50496 chr12 133275309 + 37928456 37929043 L1PA3long 6157 + 5412 5999 29380 587 chain 13629 chr12 133275309 + 37929046 37929200 L1PA3long 6157 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0 1 98 0 1 137 0 12 33 358 46 27 0 7 472 1 0 32 1 0 5 0 1 8 2 0 68 2 1 9 7 0 6 10 16 32 1 0 17 2 1 15 94 0 74 chain 70857 chr12 133275309 + 38122838 38123706 MER11D 897 + 0 897 23790 598 7 30 233 1 7 29 chain 37923 chr12 133275309 + 38128792 38129240 HERVK11D-int 613 + 153 600 36121 135 1 0 312 chain 69212 chr12 133275309 + 38129282 38130125 MER11D 897 + 31 897 24174 546 0 23 297 chain 44870 chr12 133275309 + 38144496 38145052 LTR14C 587 + 30 584 31654 141 2 0 325 2 1 5 0 1 81 chain 42362 chr12 133275309 + 38146401 38146902 MER9a1 513 + 12 513 33155 501 chain 60502 chr12 133275309 + 38171426 38172222 L1PB1 5432 + 3877 4673 26232 327 0 2 279 8 9 134 3 0 9 0 2 5 9 7 22 chain 502358 chr12 133275309 + 38207330 38213332 L1PA5 6144 + 116 6143 3046 357 10 6 83 9 7 160 16 8 226 0 1 68 0 1 8 1 0 4 8 9 165 0 1 15 9 8 190 1 0 79 0 1 277 2 1 402 0 2 306 1 7 735 0 4 95 0 5 5 2 0 527 0 10 986 0 1 197 0 1 82 0 3 132 0 4 51 0 1 123 0 5 113 1 0 419 0 1 124 3 1 10 chain 7604 chr12 133275309 + 38215562 38215879 MLT1A 405 + 28 363 75862 20 75 84 21 79 84 49 31 35 42 chain 25603 chr12 133275309 + 38231365 38231718 THE1B 368 + 0 368 48311 97 9 26 49 10 9 119 0 1 5 3 0 5 0 1 56 chain 54565 chr12 133275309 + 38259326 38260034 LTR12_ 688 + 0 688 28020 123 25 0 92 0 1 31 4 3 103 0 6 154 1 0 175 chain 81626 chr12 133275309 + 38266203 38267263 L1PA7 6471 + 5359 6430 21309 144 1 0 4 0 3 82 0 2 29 0 6 115 1 0 4 1 2 314 1 2 32 0 2 112 0 2 61 14 9 113 1 2 31 chain 94448 chr12 133275309 + 38276408 38277449 L1PA3long 6157 + 5102 6144 18971 333 0 1 708 chain 7487 chr12 133275309 + 38326221 38326320 MER30 238 + 136 238 76156 51 3 6 45 chain 41281 chr12 133275309 + 38343961 38344569 LTR14B 630 + 23 630 33800 267 0 7 50 91 83 200 chain 299345 chr12 133275309 + 38345143 38349387 L1PB1 5432 + 32 5417 6850 112 3 2 154 13 17 121 0 1 106 8 9 28 5 9 38 0 3 29 2 0 77 0 1 468 6 8 133 0 1 46 1 0 7 2 0 5 24 11 14 8 1021 39 3 0 10 0 1 107 0 1 4 1 0 10 2 5 81 0 2 24 12 14 91 1 0 36 0 4 48 0 4 483 48 46 215 3 4 49 2 0 259 1 2 493 8 7 134 3 0 48 0 1 30 0 2 105 30 29 146 37 183 50 2 1 16 1 0 44 1 0 15 1 0 4 64 48 22 1 0 18 4 3 13 1 0 9 1 0 4 chain 91481 chr12 133275309 + 38383679 38384834 L1PA8 5853 + 2611 3774 19425 185 0 4 61 0 6 47 2 1 54 0 1 109 0 1 48 1 0 462 0 1 68 1 0 110 2 0 5 chain 24901 chr12 133275309 + 38393697 38394042 THE1B 368 + 0 368 49429 44 0 15 113 1 0 14 13 14 104 2 0 5 0 10 49 chain 120383 chr12 133275309 + 38441769 38443353 LTR12C 1709 + 0 1709 15463 278 4 8 178 9 7 55 3 4 23 1 2 95 0 119 68 1 0 100 50 0 131 0 1 2 0 47 106 0 4 72 13 16 242 1 0 69 1 0 82 chain 2369 chr12 133275309 + 38442608 38442634 LTR12C 1709 + 1118 1144 81387 26 chain 195093 chr12 133275309 + 38471580 38473785 HERV17-int 4347 + 2121 4343 9886 470 0 1 548 0 1 401 1 15 612 0 1 173 chain 26643 chr12 133275309 + 38474098 38474423 LTR17 781 + 0 325 46766 119 0 9 32 0 1 144 10 0 20 chain 121839 chr12 133275309 + 38500002 38501443 L1PA7 6471 + 5028 6470 15210 498 0 1 94 1 0 464 0 1 231 1 2 147 1 0 4 chain 482123 chr12 133275309 + 38507885 38514753 L1PA6 6164 + 3 6162 3585 340 48 21 85 19 0 117 22 0 3 53 0 176 21 0 42 0 18 214 0 1 224 8 4 652 2 0 135 4 13 118 0 1 13 1 0 110 318 0 44 23 15 332 0 2 527 0 1 6 1 0 23 0 4 79 1 0 250 0 1 157 10 11 12 1 0 4 0 1 1 309 0 326 4 9 267 0 4 125 1 2 634 0 7 155 1 10 10 12 0 191 0 6 469 1 18 10 7 0 8 1 8 109 7 9 25 chain 327575 chr12 133275309 + 38534032 38538246 L1PA8A 6298 + 2075 6291 6256 435 25 1 59 1 0 50 7 11 191 0 9 39 1 3 63 0 3 141 0 1 183 15 19 130 0 4 454 2 0 227 5 4 36 0 1 4 0 2 758 13 5 36 6 7 33 5 7 75 7 6 271 0 5 141 2 1 348 8 9 24 0 1 419 chain 99651 chr12 133275309 + 38573669 38575426 L1MA1 4479 + 221 1674 18342 7 1 0 51 2 0 290 1 0 39 0 3 5 3 0 11 0 6 44 0 9 14 0 4 92 0 1 6 4 0 6 7 12 27 12 8 71 0 5 194 15 37 20 0 4 50 0 1 287 340 0 66 9 0 83 chain 70420 chr12 133275309 + 38575734 38576501 L1PA3long 6157 + 5127 5903 23888 110 0 9 657 chain 148794 chr12 133275309 + 38621446 38623092 L1PA4 6152 + 4502 6152 12435 798 0 5 697 1 0 150 chain 134591 chr12 133275309 + 38626701 38628213 L1PA3long 6157 + 4643 6157 13587 5 0 3 397 0 1 4 1 0 254 1 0 850 chain 176823 chr12 133275309 + 38638671 38640904 HERV17-int 4347 + 15 4347 10735 12 1 0 16 5 4 31 1 0 34 3 1 25 2 1 168 0 1 27 9 439 14 15 15 372 1 0 158 0 1 28 1 0 106 1 0 136 1 0 431 25 1697 328 9 10 95 0 1 97 1 4 80 chain 24930 chr12 133275309 + 38641221 38641551 LTR17 781 + 0 326 49383 61 1 0 95 7 5 18 1 0 147 chain 3891 chr12 133275309 + 38655119 38655193 MADE1 96 + 12 94 92208 21 13 22 4 1 0 35 chain 397462 chr12 133275309 + 38656907 38661603 L1PA6 6164 + 0 6159 5188 553 0 1 352 0 4 742 0 1 559 0 4 118 5 3 4 1 0 47 1 0 4 0 1 195 8 11 283 5 1437 46 0 4 722 8 7 95 0 2 117 0 4 50 0 3 639 0 1 115 0 8 27 chain 39887 chr12 133275309 + 38669549 38670101 LTR19B 566 + 0 566 34748 169 1 0 42 0 1 238 28 27 14 1 13 7 0 3 15 1 0 5 1 2 30 chain 127981 chr12 133275309 + 38715471 38717405 L1PB2 3958 + 1895 3818 14278 61 3 7 72 1 0 390 4 5 51 7 0 147 0 1 35 1 0 17 0 2 5 23 25 5 2 0 25 26 25 93 5 6 16 0 1 36 5 8 13 14 10 6 0 6 139 0 1 39 0 1 163 13 11 43 1 0 17 8 4 14 3 4 40 2 0 12 4 0 94 1 0 72 1 0 64 5 4 67 2 0 22 19 18 26 chain 139423 chr12 133275309 + 38740759 38742673 L1PA5 6144 + 4191 6128 13146 220 0 19 483 0 1 227 0 9 137 1 0 396 5 1 160 1 0 284 chain 110817 chr12 133275309 + 38749369 38750885 THE1B-int 1605 + 1 1600 16964 208 0 21 6 6 0 192 3 28 197 0 8 11 6 1 35 7 4 41 45 46 51 0 1 139 0 39 190 0 1 112 0 1 267 chain 25428 chr12 133275309 + 38750890 38751245 THE1B 368 + 0 368 48589 44 0 15 109 2 0 108 21 20 19 0 1 52 chain 15599 chr12 133275309 + 38759038 38759252 MER75B 242 + 22 242 61536 107 0 5 36 14 15 57 chain 10828 chr12 133275309 + 38771717 38771896 L1MB1 2102 + 1155 1343 68813 15 27 33 17 0 1 32 0 2 88 chain 27585 chr12 133275309 + 38777837 38778247 MER1A 529 + 102 524 45472 114 20 24 141 0 7 61 19 20 55 chain 257422 chr12 133275309 + 38796563 38799645 L1P1 4361 + 2 3080 8045 120 14 0 11 1 15 426 1 0 112 13 6 102 31 31 1171 0 1 691 0 3 389 chain 562082 chr12 133275309 + 38799646 38805673 L1HS 6032 + 3 6031 139 3044 0 2 1013 2 1 1968 chain 276393 chr12 133275309 + 38805687 38808763 L1PA3long 6157 + 3076 6157 7539 189 0 2 419 0 1 606 0 2 1415 2 0 31 0 1 97 0 1 317 chain 29168 chr12 133275309 + 38827193 38827628 L1PA15 4387 + 3887 4311 43100 23 1 0 23 1 0 171 1 0 27 1 0 53 2 1 16 8 6 10 1 0 47 9 6 41 chain 3822 chr12 133275309 + 38854393 38854436 MLT2A2 560 + 517 560 92704 43 chain 59327 chr12 133275309 + 38870109 38870796 L1PA7 6471 + 5782 6464 26557 51 1 0 148 4 0 483 chain 377201 chr12 133275309 + 38987676 38992029 L1P1 4361 + 6 4341 5529 316 0 3 249 1 0 269 18 1 3306 1 0 155 1 0 23 2 1 12 chain 83355 chr12 133275309 + 39054304 39055333 MER11C 1089 + 10 1059 20954 236 0 9 54 4 8 51 0 2 176 19 20 124 0 4 5 1 0 38 0 1 321 chain 224342 chr12 133275309 + 39097962 39100931 L1PB1 5432 + 1507 4493 8913 103 0 1 421 0 1 58 1 0 105 2 3 114 5 6 179 19 22 322 7 6 40 14 13 398 1 2 4 1 0 181 0 4 233 5 9 472 0 2 88 8 10 94 0 1 94 chain 3161 chr12 133275309 + 39135637 39135687 MADE1 96 + 2 44 98269 35 8 0 7 chain 475949 chr12 133275309 + 39207750 39213574 L1PA5 6144 + 1 5827 3723 112 11 25 73 1 0 197 34 33 311 11 12 36 0 17 135 25 0 63 1 0 150 24 16 116 0 1 2061 0 1 418 4 6 76 8 7 382 0 1 226 0 1 831 0 1 518 chain 481297 chr12 133275309 + 39260420 39265883 L1PA4 6152 + 3 6152 3601 732 0 1 500 1 0 1418 0 681 339 0 2 246 0 1 1176 0 1 4 0 1 1047 chain 2877 chr12 133275309 + 39268530 39268563 Tigger1 2417 + 2259 2292 101023 33 chain 46179 chr12 133275309 + 39297218 39297732 L1PA3long 6157 + 5628 6143 30971 380 0 1 134 chain 21140 chr12 133275309 + 39339249 39339533 Tigger3c 601 + 303 588 54960 16 1 0 20 5 4 231 0 3 11 chain 35167 chr12 133275309 + 39476990 39477456 MER4A1 472 + 0 472 37913 221 15 16 32 1 0 5 0 7 108 1 0 83 chain 170353 chr12 133275309 + 39487147 39489055 L1PA4 6152 + 3823 5737 11092 328 0 3 298 0 3 1282 chain 25066 chr12 133275309 + 39496088 39496456 THE1B 368 + 0 368 49172 7 0 8 154 1 0 21 19 10 10 0 4 14 14 12 128 chain 11990 chr12 133275309 + 39512248 39512402 L1PA8 5853 + 5701 5853 66851 39 2 1 19 2 1 92 chain 21840 chr12 133275309 + 39513652 39514026 L1M1 2793 + 2311 2685 54051 23 0 4 8 1 0 77 45 49 74 0 1 73 20 13 38 1 0 14 chain 90187 chr12 133275309 + 39521580 39522672 L1PA7 6471 + 5358 6460 19652 145 1 0 111 0 3 224 3 2 439 0 12 94 6 7 54 4 0 11 chain 24038 chr12 133275309 + 39537933 39538579 MER51B 395 + 0 395 50748 95 0 2 11 10 66 71 1 0 4 4 5 19 309 0 122 chain 32743 chr12 133275309 + 39538659 39539083 MER48 407 + 6 402 39723 157 20 0 9 8 0 230 chain 57760 chr12 133275309 + 39540254 39541009 MER4E1 777 + 0 760 27032 245 3 2 217 0 1 55 29 33 97 8 9 101 chain 120412 chr12 133275309 + 39634350 39635797 L1PA6 6164 + 4719 6161 15461 134 2 0 204 0 2 138 13 12 106 0 2 46 0 1 31 9 0 756 0 2 8 chain 524383 chr12 133275309 + 39699134 39705081 L1PA3long 6157 + 46 6156 2073 105 1 2 420 1 9 195 2 130 49 0 4 289 2 1 155 0 4 182 0 1 40 0 2 6 2 0 7 1 0 849 2 0 744 0 2 17 0 4 681 0 1 699 0 5 230 0 4 208 0 3 213 0 2 847 chain 3182 chr12 133275309 + 39707831 39707875 L1MA2 4263 + 4069 4114 98066 12 0 2 22 1 0 9 chain 21986 chr12 133275309 + 39715445 39715702 L1PB1 5432 + 3835 4092 53852 257 chain 4208 chr12 133275309 + 39722834 39723081 MER77B 728 + 38 363 90076 29 181 259 37 chain 535889 chr12 133275309 + 39745958 39752060 L1PA5 6144 + 3 6142 1571 127 2 1 252 2 11 1247 1 0 535 0 4 201 0 4 205 0 1 1085 1 4 664 0 4 99 0 3 847 0 4 9 0 9 125 2 0 698 chain 129765 chr12 133275309 + 39782593 39786129 THE1A-int 1579 + 0 1579 14067 261 1962 0 22 0 1 170 1 2 424 0 3 696 chain 93007 chr12 133275309 + 39783771 39784816 L1PA5 6144 + 4178 5224 19177 321 0 1 724 chain 25705 chr12 133275309 + 39786137 39786483 THE1A 353 + 8 353 48161 101 2 1 69 3 4 15 1 0 155 chain 118767 chr12 133275309 + 39791160 39792438 L1PA2 6032 + 3803 5081 15756 1278 chain 87143 chr12 133275309 + 39800330 39801257 L1HS 6032 + 5103 6030 20203 927 chain 20551 chr12 133275309 + 39816346 39816567 L1PA5 6144 + 5900 6121 55712 221 chain 24149 chr12 133275309 + 39821138 39821421 AluY 311 + 7 294 50574 114 3 7 166 chain 192110 chr12 133275309 + 39836423 39838504 L1PA2 6032 + 3951 6032 10020 2081 chain 216585 chr12 133275309 + 39899942 39902350 L1PA3long 6157 + 3746 6157 9130 411 0 3 826 2 0 1020 1 3 148 chain 4954 chr12 133275309 + 39914586 39914666 MADE1 96 + 0 96 85875 44 1 17 35 chain 555242 chr12 133275309 + 39978316 39984339 L1PA2 6032 + 7 6029 391 3037 1 0 2985 chain 53324 chr12 133275309 + 39996775 39997415 L1PB1 5432 + 3704 4346 28462 24 2 4 614 chain 32147 chr12 133275309 + 39998431 39998828 THE1B-int 1605 + 1204 1600 40231 91 2 1 304 chain 79132 chr12 133275309 + 39998964 39999990 MER11A 1151 + 0 1087 21830 55 0 99 140 4 0 94 0 1 54 0 1 231 0 1 72 0 5 83 52 0 12 4 13 75 2 0 5 0 2 28 0 1 115 chain 4065 chr12 133275309 + 40165796 40165843 MADE1 96 + 49 96 90986 47 chain 17148 chr12 133275309 + 40210827 40211052 MER4A1 472 + 0 225 59636 15 0 2 172 2 0 36 chain 54483 chr12 133275309 + 40211154 40211907 MER4-int 2692 + 179 970 28054 34 7 6 181 11 23 69 0 2 33 12 21 143 0 2 15 14 12 64 0 13 64 0 3 106 chain 70645 chr12 133275309 + 40265733 40266529 L1PA4 6152 + 4721 5518 23834 580 0 1 216 chain 36408 chr12 133275309 + 40291026 40291432 L1PA5 6144 + 5731 6137 37136 406 chain 15359 chr12 133275309 + 40301239 40301420 AluSc5 308 + 96 277 61841 181 chain 29479 chr12 133275309 + 40382403 40382775 PABL_A 660 + 0 382 42629 84 0 9 112 4 5 172 chain 170784 chr12 133275309 + 40386454 40388519 HERV17-int 4347 + 13 2510 11064 65 1 0 37 2 0 24 1 0 188 0 430 12 0 4 402 1 0 186 5 6 103 1 2 613 6 7 418 chain 81925 chr12 133275309 + 40620498 40621778 LTR12E 1234 + 0 1210 21260 29 9 0 61 0 1 46 5 10 55 0 19 69 1 2 37 10 53 122 0 1 185 42 1 149 9 20 81 0 1 86 97 0 42 0 1 38 20 13 15 12 13 60 chain 40435 chr12 133275309 + 40637447 40638002 MER41B 635 + 0 556 34358 92 1 0 35 3 4 220 26 27 178 chain 4355 chr12 133275309 + 40739515 40739568 MER53 195 - 101 154 89141 53 chain 7767 chr12 133275309 + 40859297 40859486 L1MC2 1988 + 1822 1982 75442 79 82 53 28 chain 78418 chr12 133275309 + 40887307 40888175 L1PA4 6152 + 5284 6152 21997 868 chain 20497 chr12 133275309 + 40982859 40983094 L1PA5 6144 + 5901 6137 55788 104 0 1 131 chain 142192 chr12 133275309 + 41042595 41044159 L1PA3long 6157 + 4591 6157 12920 795 0 2 769 chain 25351 chr12 133275309 + 41067505 41067777 L1PA2 6032 + 5757 6030 48704 122 0 1 150 chain 31681 chr12 133275309 + 41117812 41118608 L1PA3long 6157 + 5389 6157 40595 273 28 0 495 chain 86339 chr12 133275309 + 41138305 41139382 L1PA7 6471 + 5376 6461 20358 149 7 11 74 6 4 304 0 1 117 0 1 4 0 2 226 0 1 127 0 1 63 chain 66594 chr12 133275309 + 41161068 41161834 L1PA4 6152 + 2509 3279 24798 661 0 1 85 0 3 20 chain 43158 chr12 133275309 + 41166187 41166668 L1PA2 6032 + 5550 6028 32678 469 3 0 9 chain 20345 chr12 133275309 + 41182271 41182501 L1PA4 6152 + 2571 2801 55953 230 chain 13280 chr12 133275309 + 41213513 41213676 MER107 203 + 33 203 64663 55 0 1 84 0 6 24 chain 60101 chr12 133275309 + 41233090 41233766 L1PA4 6152 + 5291 5969 26342 27 0 2 649 chain 26478 chr12 133275309 + 41238359 41238960 L1PA11 4918 + 4157 4629 47015 171 6 0 63 19 16 67 2 0 14 1 0 13 0 1 6 92 0 9 48 38 13 20 12 5 1 0 8 1 0 5 19 13 18 chain 487754 chr12 133275309 + 41279919 41286008 L1PA7 6471 + 3 6465 3476 407 3 4 135 0 1 75 1 2 1260 20 366 387 0 2 588 3 2 265 1 0 49 0 11 118 8 9 26 0 1 113 5 6 174 15 17 466 0 1 83 1 0 7 0 1 58 9 7 128 0 3 120 5 7 83 1 0 408 0 1 153 0 1 74 2 0 90 0 3 344 0 1 77 0 3 319 2 0 6 chain 13862 chr12 133275309 + 41488971 41489203 MER30 238 + 11 238 63779 79 21 1 8 3 0 7 4 25 68 3 0 39 chain 28239 chr12 133275309 + 41614385 41614752 THE1B 368 + 0 368 44505 90 0 4 78 2 1 20 2 0 175 chain 119686 chr12 133275309 + 41614752 41616310 THE1B-int 1605 + 0 1599 15581 165 7 13 254 12 37 255 0 3 54 6 6 225 0 1 255 0 9 293 6 3 26 chain 74235 chr12 133275309 + 41664872 41665813 L1PA8A 6298 + 5352 6291 23024 131 2 1 24 0 1 22 1 0 49 2 0 17 4 5 575 7 0 6 7 14 94 chain 549349 chr12 133275309 + 41672452 41678469 L1PA2 6032 + 6 6026 791 65 1 2 667 1 2 1087 0 1 323 1 0 4 0 1 3868 chain 50860 chr12 133275309 + 41684646 41685389 L1PB2 3958 + 3089 3836 29253 4 0 1 110 2 1 75 0 4 14 0 1 4 1 0 4 3 1 53 1 0 13 5 0 65 2 0 13 3 0 88 2 0 77 1 0 14 1 13 30 9 8 58 11 9 26 1 0 22 0 8 31 chain 24539 chr12 133275309 + 41694963 41695396 MER1A 529 + 37 525 49965 40 14 15 10 12 56 31 26 33 219 30 33 51 chain 28583 chr12 133275309 + 41724243 41724768 MER44B 551 + 36 550 43984 81 72 57 28 40 48 196 4 0 17 15 15 72 chain 28491 chr12 133275309 + 41729440 41729740 AluYg6 310 + 0 300 44142 300 chain 67035 chr12 133275309 + 41759854 41760776 L1PA11 4918 + 3549 4476 24697 88 2 3 78 19 16 410 0 9 98 1 0 7 6 7 15 12 16 14 0 4 14 5 0 64 6 3 12 2 0 69 chain 7177 chr12 133275309 + 41790796 41791013 MER31B 477 + 102 335 77023 16 67 84 42 37 35 35 0 1 20 chain 225037 chr12 133275309 + 41806941 41809743 L1PA8 5853 + 3061 5853 8890 147 7 6 101 0 1 474 0 1 161 0 2 261 2 1 124 1 0 376 1 0 288 6 5 85 1 0 60 7 6 402 1 0 47 3 1 68 12 12 5 2 0 45 2 1 19 1 0 93 chain 4368 chr12 133275309 + 41818347 41818396 MLT1B 390 + 308 357 89065 49 chain 71097 chr12 133275309 + 41823575 41824346 L1PA4 6152 + 5365 6136 23744 771 chain 106209 chr12 133275309 + 41854151 41855417 L1PA7 6471 + 5203 6464 17543 418 3 0 93 0 2 685 4 0 63 chain 78703 chr12 133275309 + 41864202 41865291 L1PA11 4918 + 3419 4505 21938 33 5 7 108 1 0 131 2 0 142 0 1 417 6 7 66 31 26 25 0 3 8 2 1 11 6 4 23 4 6 10 0 1 13 0 1 9 2 0 16 1 0 17 chain 495671 chr12 133275309 + 41870229 41876296 L1PA7 6471 + 5 6464 3280 398 7 0 265 4 5 25 21 19 58 0 2 97 0 378 517 0 4 311 0 3 504 0 2 39 0 1 115 0 3 346 0 1 4 2 1 94 1 2 53 0 9 7 0 1 202 26 27 187 3 4 140 1 0 38 0 1 30 1 0 106 8 0 148 0 1 665 0 7 123 1 0 29 3 2 388 1 0 243 7 5 849 chain 6958 chr12 133275309 + 41956652 41956739 L1MC4 1079 + 244 331 77746 87 chain 27277 chr12 133275309 + 41985437 41985778 L1PA7 6471 + 4856 5191 45855 128 1 0 36 1 0 89 4 0 82 chain 30777 chr12 133275309 + 41985779 41986135 L1PA7 6471 + 5191 5544 41324 269 3 1 79 1 0 4 chain 78126 chr12 133275309 + 41986136 41987051 L1PA7 6471 + 5546 6460 22066 75 1 0 70 1 0 605 14 15 149 chain 127394 chr12 133275309 + 42036344 42038190 L1MA3 4352 + 2512 4352 14375 67 4 0 142 7 8 161 1 2 175 0 5 115 1 0 5 0 1 54 5 7 60 1 10 72 6 7 671 120 105 73 4 6 24 1 0 5 2 1 28 1 0 12 6 2 17 1 0 5 chain 542881 chr12 133275309 + 42062980 42069110 L1PA4 6152 + 3 6141 1144 457 6 0 120 1 0 1154 0 6 272 0 6 143 0 1 2472 0 1 111 0 1 625 1 0 142 0 1 626 chain 13791 chr12 133275309 + 42077853 42078043 L1PA7 6471 + 6262 6452 63896 155 10 1 8 0 9 17 chain 21168 chr12 133275309 + 42089250 42089490 L1PA5 6144 + 5897 6137 54926 240 chain 515757 chr12 133275309 + 42111145 42117024 L1PA4 6152 + 2 5887 2481 458 6 0 116 1 0 121 1 0 202 7 0 141 1 0 116 0 3 283 0 1 269 0 10 811 0 3 1710 0 1 387 0 1 644 1 0 19 0 4 585 chain 4660 chr12 133275309 + 42118097 42118160 MLT1J 494 + 401 463 87478 53 1 0 9 chain 3746 chr12 133275309 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6696 chr12 133275309 + 42228233 42228314 SVA_F 1814 + 1109 1187 74030 34 1 0 34 2 0 10 chain 8129 chr12 133275309 + 42228657 42228788 SVA_F 1814 + 931 995 59525 6 3 0 10 79 15 33 chain 6708 chr12 133275309 + 42228677 42228755 SVA_F 1814 + 1011 1089 61685 78 chain 49038 chr12 133275309 + 42278565 42279199 L1PA8 5853 + 5217 5853 29939 119 1 8 110 0 1 31 0 1 75 1 0 47 2 0 60 11 10 9 1 0 52 2 1 19 1 0 93 chain 5117 chr12 133275309 + 42318811 42318874 L1MC4 1079 + 194 257 85066 63 chain 87530 chr12 133275309 + 42387718 42388711 LTR5B 1012 + 0 1012 20131 123 0 14 380 0 1 307 0 4 183 chain 3804 chr12 133275309 + 42408388 42408435 MADE1 96 + 39 90 92812 6 0 4 41 chain 97783 chr12 133275309 + 42427319 42428761 L1PB1 5432 + 4016 5420 18550 13 0 1 61 1 0 153 0 14 4 0 1 73 5 1 467 1 0 17 1 0 189 2 0 5 0 2 18 1 7 6 5 0 4 1 0 51 3 0 10 8 7 18 1 0 4 32 25 27 4 0 26 2 1 16 1 0 17 5 4 16 8 7 15 2 0 6 2 0 11 11 0 9 7 5 5 1 0 9 4 0 5 2 0 24 1 0 21 1 0 13 1 0 16 chain 228029 chr12 133275309 + 42443565 42446699 HERVK22-int 3844 + 85 3840 8807 36 2 1 17 0 3 151 0 2 408 0 3 230 0 4 77 1 0 1062 0 3 46 2 1 27 0 4 118 4 8 127 0 1 193 32 5 10 43 25 168 67 82 70 79 710 67 8 7 89 chain 8732 chr12 133275309 + 42454727 42454819 HY3 101 + 8 100 73134 92 chain 16783 chr12 133275309 + 42582698 42582931 MER30 238 + 0 238 60051 103 18 23 112 chain 43610 chr12 133275309 + 42607609 42608239 MER41B 635 + 0 635 32376 81 10 11 34 6 7 251 1 6 59 18 17 11 4 5 106 0 1 16 3 0 30 chain 36656 chr12 133275309 + 42691931 42692486 MER51A 677 + 1 658 36980 175 2 137 16 0 18 16 0 1 9 1 6 42 57 0 237 chain 6012 chr12 133275309 + 42695558 42695646 MER51A 677 + 176 254 81032 24 10 0 54 chain 520373 chr12 133275309 + 42707902 42714407 L1PA7 6471 + 8 6465 2258 389 6 7 273 9 10 487 0 10 194 0 1 325 1 3 16 0 22 22 3 7 40 0 5 331 10 15 43 0 1 377 48 13 42 0 4 147 91 0 202 0 2 224 0 3 280 1 0 19 9 1 22 0 3 32 0 2 24 0 1 216 20 6 166 4 9 253 0 2 23 1 2 33 0 3 165 0 1 105 0 1 85 0 4 169 3 0 99 2 0 85 0 1 319 1 0 14 0 1 88 0 1 11 0 5 118 7 11 18 0 3 32 0 2 25 0 4 11 0 2 163 1 0 273 0 1 328 chain 25821 chr12 133275309 + 42732454 42732816 THE1C 375 + 4 375 47989 39 0 3 4 1 0 79 6 10 43 1 2 6 1 0 139 0 1 17 0 2 26 chain 3022 chr12 133275309 + 42753906 42753945 L1MA4 2864 + 2758 2801 99633 6 0 4 33 chain 22644 chr12 133275309 + 42765396 42765690 AluY 311 + 19 302 52918 44 2 1 54 5 0 14 0 1 5 7 1 163 chain 26680 chr12 133275309 + 42797398 42797704 AluY 311 + 6 311 46714 121 1 0 184 chain 6713 chr12 133275309 + 42813782 42813861 MLT1E1 597 + 517 596 78597 79 chain 23061 chr12 133275309 + 42877386 42877670 L1P1 4361 + 4060 4341 52273 90 1 0 155 1 0 23 2 1 12 chain 7985 chr12 133275309 + 42886769 42886944 L1PB1 5432 + 5267 5424 74913 14 1 0 15 1 0 4 19 8 19 8 5 14 2 0 24 1 0 22 0 3 9 1 0 16 1 0 4 chain 125220 chr12 133275309 + 42952086 42953655 THE1A-int 1579 + 0 1579 14664 50 1 0 20 6 10 130 2 0 444 0 3 401 1 2 367 11 16 136 chain 21700 chr12 133275309 + 43189092 43189437 THE1B 368 + 0 368 54224 44 0 15 108 6 5 29 45 53 106 0 1 7 chain 117249 chr12 133275309 + 43224139 43225589 LTR12C 1709 + 0 1709 16009 338 0 43 269 0 119 68 1 0 273 1 0 7 3 1 100 4 0 6 0 4 211 2 103 167 chain 505035 chr12 133275309 + 43227728 43233334 L1PA3long 6157 + 0 5748 2971 151 1 2 623 0 128 52 0 4 2302 0 1 1245 1 2 800 0 4 86 0 3 345 chain 10267 chr12 133275309 + 43249252 43249590 L1PB1 5432 + 5114 5422 69867 24 8 6 12 2 0 3 2 0 9 2 0 52 149 130 20 1 0 22 1 0 12 1 0 18 chain 114829 chr12 133275309 + 43274597 43276160 L1PA8A 6298 + 4285 5808 16407 108 1 5 205 41 4 37 17 0 181 2 0 217 3 8 6 11 0 79 0 1 112 4 6 215 0 4 12 3 6 96 0 7 164 0 1 49 chain 22536 chr12 133275309 + 43301102 43301439 THE1B 368 + 0 342 53062 29 0 5 91 0 1 43 1 0 31 1 0 9 5 9 14 1 0 10 1 0 60 11 10 30 chain 3284 chr12 133275309 + 43312587 43312622 MER4A1 472 + 423 458 97157 35 chain 46281 chr12 133275309 + 43341675 43342289 MER41B 635 + 0 620 30931 122 4 5 313 24 28 39 0 1 112 chain 28612 chr12 133275309 + 43358556 43358857 AluYg6 310 + 0 301 43931 301 chain 65948 chr12 133275309 + 43458793 43459573 LTR17 781 + 0 781 24970 326 0 1 454 chain 558240 chr12 133275309 + 43470973 43477008 L1PA2 6032 + 1 6032 236 3074 1 0 1522 3 0 1435 chain 5402 chr12 133275309 + 43506368 43506438 L1MB2 1706 + 1602 1672 83698 4 0 1 4 1 0 61 chain 23833 chr12 133275309 + 43514294 43514589 AluSc5 308 + 12 308 51051 88 0 1 207 chain 94502 chr12 133275309 + 43533335 43534344 L1HS 6032 + 4226 5235 18965 1009 chain 41920 chr12 133275309 + 43582665 43583191 L1PA7 6471 + 5917 6461 33414 209 5 6 153 20 37 139 chain 42065 chr12 133275309 + 43585246 43585696 L1HS 6032 + 5582 6032 33314 450 chain 75602 chr12 133275309 + 43605785 43606603 L1PA3long 6157 + 5339 6157 22692 818 chain 292891 chr12 133275309 + 43609491 43612978 L1PA6 6164 + 2669 6162 7046 516 1 0 4 0 1 84 2 1 136 0 1 324 6 5 397 0 1 350 1 2 8 0 5 1499 1 3 5 1 0 118 0 1 24 2 0 8 chain 62516 chr12 133275309 + 43623517 43624208 L1PA3long 6157 + 4425 5115 25750 246 1 0 444 chain 35375 chr12 133275309 + 43648873 43649342 MER41A 554 + 0 466 37785 42 0 1 6 1 0 100 4 3 107 1 2 61 0 1 19 15 11 113 chain 163031 chr12 133275309 + 43684345 43686334 SVA_D 2077 + 0 2067 11543 28 0 11 140 13 13 187 1 0 512 17 59 10 0 1 43 0 17 13 1 2 12 0 1 37 0 1 96 93 0 151 0 98 635 chain 5336 chr12 133275309 + 43685467 43685548 SVA_D 2077 + 969 1056 31971 17 0 4 44 2 4 18 chain 73724 chr12 133275309 + 43688199 43689166 L1PA15 4387 + 2220 3190 23161 118 0 1 78 0 1 30 0 1 21 0 1 172 2 1 84 0 1 312 1 2 125 3 1 21 chain 144868 chr12 133275309 + 43702674 43704719 HUERS-P3b-int 2065 + 13 2031 12702 47 6 5 21 11 8 223 0 1 255 8 5 25 1 0 84 4 0 69 1 5 13 1 0 55 1 0 25 2 1 126 2 1 238 0 1 167 1 2 81 1 0 44 8 6 16 0 1 12 2 1 5 0 1 57 4 3 20 1 0 53 1 2 4 1 0 29 9 8 56 12 10 16 6 3 16 3 0 49 5 1 57 1 0 90 chain 16014 chr12 133275309 + 43714048 43714279 MER1B 344 + 95 335 61011 101 9 20 54 9 7 58 chain 42937 chr12 133275309 + 43726841 43727554 L1PA15 4387 + 3661 4366 32817 111 2 3 26 7 14 76 2 1 5 0 1 35 1 0 116 0 1 53 2 1 25 1 0 55 2 1 15 0 1 6 4 0 10 1 0 39 16 14 26 52 46 14 1 0 10 chain 104820 chr12 133275309 + 43863716 43865195 LTR12C 1709 + 0 1709 17712 122 0 1 5 1 0 134 0 1 23 5 1 6 0 9 162 14 9 106 1 0 75 0 119 64 1 0 66 0 78 71 20 69 94 44 13 64 4 22 183 2 0 116 13 12 78 0 1 5 chain 23634 chr12 133275309 + 43866813 43867112 AluSp 311 + 5 301 51378 225 0 1 38 2 1 14 3 0 17 chain 27498 chr12 133275309 + 43884665 43885087 MER83 447 + 1 430 45585 73 0 2 67 12 11 11 1 17 164 7 0 55 18 15 14 chain 544247 chr12 133275309 + 43906483 43912505 L1PA3long 6157 + 0 6155 1072 153 0 1 627 0 128 1246 1 0 9 0 1 1101 0 4 2885 chain 10579 chr12 133275309 + 43950567 43950714 MER50 708 + 98 251 69266 73 7 13 67 chain 289094 chr12 133275309 + 43951930 43955827 L1PA10 4194 + 253 4122 7159 17 4 2 14 1 0 8 27 19 22 2 0 18 1 0 10 5 4 4 1 0 9 1 0 7 12 0 7 1 0 9 1 0 81 2 0 405 2 0 526 17 11 111 1 0 79 0 1 351 2 0 164 12 10 86 0 1 214 0 2 178 0 1 39 2 0 14 8 12 17 0 4 264 0 15 210 4 1 94 0 1 106 0 2 60 18 8 212 0 1 162 1 2 63 6 9 197 3 0 5 chain 5512 chr12 133275309 + 43983471 43983547 MADE1 96 + 1 93 83190 40 4 20 32 chain 22650 chr12 133275309 + 44007617 44007925 THE1B 368 + 0 306 52901 168 2 1 33 9 7 92 0 1 4 chain 18507 chr12 133275309 + 44023758 44023962 L1PA4 6152 + 5936 6140 58092 204 chain 42190 chr12 133275309 + 44028333 44028857 MER41A 554 + 0 533 33253 228 0 1 284 0 8 12 chain 21430 chr12 133275309 + 44030242 44030646 MER41-int 2638 + 112 484 54604 58 32 18 25 6 3 14 1 3 15 1 0 5 18 7 36 4 0 118 13 14 23 1 0 7 2 1 25 chain 7335 chr12 133275309 + 44030652 44030739 MER85 139 + 5 92 76557 87 chain 3734 chr12 133275309 + 44037767 44037954 MER52A 1651 + 809 993 93371 13 2 40 11 25 23 20 9 0 17 63 33 27 chain 30880 chr12 133275309 + 44042384 44042761 MLT2A1 477 + 0 382 41237 142 0 1 19 7 11 209 chain 297359 chr12 133275309 + 44042848 44047002 HERVL-int 5654 + 0 5648 6911 69 0 1 79 1 0 95 1 14 40 0 1 112 5 7 237 1 0 80 0 4 47 0 1 352 0 4 12 0 11 228 0 1767 106 1 0 109 0 10 476 16 6 422 4 0 43 0 7 66 0 4 104 300 16 6 6 0 46 27 0 26 0 1 33 61 61 89 0 1 34 8 13 376 1 0 136 2 0 82 0 1 72 2 0 141 chain 40804 chr12 133275309 + 44049045 44049527 L1PA8A 6298 + 5811 6291 34092 197 1 0 158 1 0 125 chain 118811 chr12 133275309 + 44095759 44097073 L1PA4 6152 + 4031 5349 15742 325 0 4 989 chain 18792 chr12 133275309 + 44115235 44115453 L1PA5 6144 + 5911 6129 57794 218 chain 61389 chr12 133275309 + 44169751 44170439 L1PA5 6144 + 5441 6129 26011 688 chain 15827 chr12 133275309 + 44182431 44182603 L1PA2 6032 + 3745 3917 61246 172 chain 22728 chr12 133275309 + 44213551 44213860 THE1C 375 + 16 330 52790 125 1 5 37 10 11 136 chain 127223 chr12 133275309 + 44249372 44251003 L1PA8 5853 + 4226 5853 14397 69 12 11 704 0 2 81 0 1 470 1 0 44 2 0 51 0 2 17 21 18 44 2 1 19 2 1 92 chain 60463 chr12 133275309 + 44272327 44273011 L1PA5 6144 + 5087 5774 26249 210 0 4 31 1 0 442 chain 125296 chr12 133275309 + 44282249 44283786 THE1A-int 1579 + 0 1570 14656 208 0 16 136 0 1 43 1 14 201 3 4 31 0 2 914 chain 9438 chr12 133275309 + 44284348 44284459 THE1A 353 + 242 353 71621 111 chain 4340 chr12 133275309 + 44329524 44329581 MER31B 477 + 419 477 89233 42 0 1 15 chain 43511 chr12 133275309 + 44354320 44354796 L1PA4 6152 + 3640 4116 32449 476 chain 23363 chr12 133275309 + 44416191 44416523 L1PA8 5853 + 5529 5853 51832 35 1 0 44 2 0 70 2 1 12 2 0 53 1 0 16 2 1 92 chain 33316 chr12 133275309 + 44435260 44435785 L1PA16 3655 + 3127 3621 39245 77 1 0 15 0 1 71 2 0 118 15 15 100 8 5 49 3 0 10 40 17 16 chain 235665 chr12 133275309 + 44450465 44453342 HERVH-int 3825 + 0 3120 8580 333 5 4 34 0 1 20 29 28 26 75 305 12 0 2 14 13 16 338 0 4 258 0 1 674 0 1 275 0 4 251 1 0 519 chain 29503 chr12 133275309 + 44455655 44456054 LTR7 482 + 0 469 42603 69 8 46 109 8 40 43 0 1 4 1 0 157 chain 21774 chr12 133275309 + 44470140 44470451 L1PA8 5853 + 5548 5853 54129 16 1 0 44 2 0 71 1 0 8 0 3 9 3 0 43 1 0 18 4 3 90 chain 3214 chr12 133275309 + 44500958 44501148 LTR12C 1709 + 997 1109 97769 20 80 2 26 47 47 17 chain 6990 chr12 133275309 + 44517485 44517569 MSTA 426 + 333 417 77640 84 chain 24398 chr12 133275309 + 44521284 44521545 AluYa5 310 + 36 297 50174 261 chain 26894 chr12 133275309 + 44552984 44553271 L1HS 6032 + 5734 6021 46414 287 chain 400470 chr12 133275309 + 44558361 44563322 L1PA7 6471 + 0 6468 5146 158 1 0 4 34 19 137 0 1 84 1 2 271 0 1503 12 1 0 447 3 4 340 0 1 79 0 1 543 2 0 226 1 0 81 1 2 320 0 1 127 6 7 181 3 2 111 0 11 476 22 26 444 1 0 424 0 1 195 0 3 64 16 15 145 chain 18462 chr12 133275309 + 44593856 44594064 L1PA7 6471 + 6034 6242 58146 208 chain 5820 chr12 133275309 + 44594077 44594144 L1PA7 6471 + 6246 6313 81822 67 chain 11469 chr12 133275309 + 44594152 44594297 L1PA7 6471 + 6322 6464 67794 137 3 0 5 chain 28710 chr12 133275309 + 44617405 44617719 AluYa5 310 + 0 309 43781 127 5 0 182 chain 25059 chr12 133275309 + 44623841 44624141 L1PA7 6471 + 6165 6466 49185 155 0 1 145 chain 3744 chr12 133275309 + 44709710 44709751 MER5A1 166 + 83 124 93304 41 chain 3193 chr12 133275309 + 44740152 44740189 MLT1L 557 + 177 214 97952 37 chain 543765 chr12 133275309 + 44741317 44747454 L1PA4 6152 + 0 6146 1095 460 6 0 120 1 0 482 0 2 254 0 6 149 0 1 726 0 2 1157 2 0 530 0 2 49 0 1 410 0 4 608 0 7 1 7 0 1175 chain 4488 chr12 133275309 + 44747470 44747609 Tigger2 2703 + 2522 2664 88404 44 74 77 21 chain 11173 chr12 133275309 + 44761096 44761373 AluSp 311 + 151 287 68299 18 141 0 118 chain 207056 chr12 133275309 + 44784454 44787041 L1PA8 5853 + 3267 5853 9462 324 5 4 312 0 1 271 0 3 38 0 1 100 1 0 13 1 0 117 0 1 378 4 5 171 1 0 4 3 1 22 3 6 61 0 1 463 1 0 44 7 5 61 6 5 9 2 1 10 0 1 40 2 1 19 1 0 93 chain 12794 chr12 133275309 + 44791228 44791486 L1PB1 5432 + 5114 5346 65451 24 1 0 9 1 0 9 6 2 11 2 0 51 2 1 16 1 0 43 1 0 16 3 0 7 14 5 16 11 8 14 chain 5455 chr12 133275309 + 44810982 44811046 L1PA8 5853 + 5499 5564 83428 5 0 1 59 chain 19195 chr12 133275309 + 44811047 44811341 L1PA8 5853 + 5564 5853 57352 45 2 0 76 12 11 37 9 8 19 9 8 85 chain 23892 chr12 133275309 + 44825763 44826054 AluSp 311 + 0 296 50954 91 0 3 186 0 2 14 chain 21118 chr12 133275309 + 44864837 44865824 L1HS 6032 + 5066 6030 54983 474 23 0 490 chain 517661 chr12 133275309 + 44897325 44904044 L1PA7 6471 + 4 6468 2384 144 0 6 6 7 1 237 0 3 10 0 1 262 17 18 47 12 20 189 0 4 296 0 6 10 21 15 69 0 1 4 1 0 9 1 2 404 12 6 252 0 1 339 0 2 272 0 1 753 1 0 38 285 0 43 1 0 222 0 1 126 0 1 9 10 9 157 1 0 3 1 0 484 0 1 342 1 0 639 0 5 86 3 9 34 0 1 21 0 2 160 0 1 532 0 1 122 0 1 24 chain 6193 chr12 133275309 + 44912866 44912942 MIR 256 + 37 113 80379 76 chain 554741 chr12 133275309 + 44931705 44937851 L1PA3long 6157 + 6 6157 430 430 2 0 726 0 3 4145 0 4 843 chain 558642 chr12 133275309 + 44950958 44956988 L1PA2 6032 + 0 6032 212 252 9 8 422 0 3 5347 chain 13775 chr12 133275309 + 45008040 45008286 MLT2B2 565 + 370 553 63918 17 0 1 120 8 0 9 56 0 36 chain 25262 chr12 133275309 + 45024058 45024402 THE1C 375 + 30 375 48845 17 0 9 57 0 1 84 9 0 77 0 1 73 1 0 26 chain 30398 chr12 133275309 + 45039993 45040433 MLT2A1 477 + 0 477 41677 83 0 1 84 6 3 77 17 24 91 0 2 20 4 0 8 3 37 47 chain 230018 chr12 133275309 + 45053383 45056638 L1PB1 5432 + 2284 5420 8746 31 1 2 106 0 4 459 0 3 40 0 4 158 40 7 5 0 3 52 0 2 175 4 0 222 0 1 4 1 0 171 2 0 334 1 4 248 0 1 133 0 2 17 18 14 17 3 4 114 0 1 177 1 7 192 0 13 92 1 2 9 92 0 21 1 0 12 17 12 10 2 0 9 1 4 36 2 1 18 2 1 42 1 0 16 3 0 6 16 6 19 24 19 24 1 0 21 1 0 13 1 0 16 chain 22624 chr12 133275309 + 45069714 45070066 THE1A 353 + 0 353 52951 13 2 0 29 49 52 259 chain 2980 chr12 133275309 + 45117194 45117227 L1PB1 5432 + 5184 5217 100056 33 chain 10402 chr12 133275309 + 45117248 45117448 L1PB1 5432 + 5236 5415 69614 60 14 1 27 27 22 24 1 0 21 1 0 13 1 0 11 chain 428126 chr12 133275309 + 45132262 45137677 L1PA7 6471 + 0 6466 4775 130 0 1 36 0 16 55 5 15 21 27 28 93 14 15 59 1 0 108 25 10 60 4 5 4 1 0 84 1 13 28 4 1 23 1 39 292 9 41 396 8 21 1037 2 1 295 1 0 173 0 4 646 0 1 32 0 3 339 1 0 144 1 0 369 1 2 25 0 8 534 2 933 316 0 2 8 chain 12651 chr12 133275309 + 45200434 45200674 L1MB2 1706 + 1435 1673 65717 53 4 5 38 1 0 25 43 42 13 1 0 62 chain 6170 chr12 133275309 + 45335595 45335721 Tigger4a 237 + 110 237 80452 57 37 38 32 chain 20259 chr12 133275309 + 45363616 45363978 THE1B 368 + 0 368 56066 111 12 13 53 29 23 14 14 26 66 17 16 46 chain 543703 chr12 133275309 + 45370852 45376857 L1PA3long 6157 + 4 6152 1096 149 0 1 622 0 128 1579 0 1 735 0 1 41 0 8 2041 0 4 838 chain 20927 chr12 133275309 + 45387710 45388062 THE1D 372 + 0 360 55224 100 5 4 56 78 86 85 0 1 28 chain 514461 chr12 133275309 + 45391883 45397988 L1PA6 6164 + 2 6160 2547 235 0 2 23 1 0 248 8 10 221 0 3 6 3 0 37 0 17 62 0 10 168 0 2 407 0 2 878 0 1 62 8 6 180 0 4 562 0 5 17 1 0 19 0 1 1462 0 5 21 5 8 419 16 7 197 0 7 238 0 3 414 3 5 184 chain 40177 chr12 133275309 + 45448399 45448954 L1PB1 5432 + 2064 2623 34535 93 18 19 102 0 5 158 0 1 49 5 2 130 chain 47000 chr12 133275309 + 45508347 45508873 L1PA4 6152 + 5624 6152 30661 520 0 2 6 chain 40454 chr12 133275309 + 45523693 45524144 L1PA4 6152 + 5695 6146 34342 451 chain 282015 chr12 133275309 + 45524171 45527966 L1PB1 5432 + 1013 5383 7373 267 0 3 112 1 0 14 8 1 91 7 18 25 0 4 50 0 5 82 0 1 263 8 5 86 0 1 94 0 1 117 1 0 50 11 12 60 0 4 117 9 0 345 2 1 525 0 573 161 0 1 323 0 1 4 1 0 198 0 1 74 0 2 252 0 18 95 3 7 5 1 0 21 3 2 9 1 0 20 1 0 13 16 11 11 6 4 47 2 1 16 1 0 44 1 0 8 1 0 7 3 0 7 15 6 13 47 42 6 1 0 13 chain 46105 chr12 133275309 + 45538337 45538847 L1PA4 6152 + 5642 6152 31013 510 chain 12575 chr12 133275309 + 45859219 45859386 Tigger3a 397 + 139 315 65844 16 1 11 16 1 0 133 chain 23422 chr12 133275309 + 45918086 45918361 AluYk4 311 + 11 291 51724 78 0 4 84 0 1 113 chain 120780 chr12 133275309 + 45999676 46001131 SVA_A 1864 + 18 1864 15382 385 0 116 209 0 39 104 19 0 15 1 0 5 3 6 82 12 231 27 8 42 585 chain 120943 chr12 133275309 + 46017836 46019318 LTR12C 1709 + 0 1709 15355 214 5 6 40 4 5 31 0 1 71 7 6 95 0 1 249 0 118 275 9 6 106 0 4 52 1 3 26 0 1 86 0 102 211 chain 97758 chr12 133275309 + 46033133 46034391 HERVH-int 3825 + 2573 3825 18554 49 0 1 175 12 1 46 0 1 178 2 0 5 0 2 290 1 2 108 17 19 375 chain 30410 chr12 133275309 + 46036578 46037031 LTR7B 505 + 0 495 41669 93 0 1 11 0 10 60 0 38 12 33 26 27 0 2 85 1 0 76 14 13 41 chain 415597 chr12 133275309 + 46037055 46042083 L1PA7 6471 + 474 6470 4947 366 0 2 164 0 24 147 0 1 32 0 4 753 12 10 334 19 19 302 1 0 9 4 0 26 1 0 67 1 0 483 0 936 234 0 7 561 1 0 367 0 1 377 1 4 432 0 1 171 1 3 5 2 0 72 1 0 82 chain 103731 chr12 133275309 + 46055690 46056823 L1PA3long 6157 + 5024 6157 17845 1133 chain 5679 chr12 133275309 + 46116998 46117084 L1PB3 3668 + 3482 3565 82434 21 2 1 24 3 1 36 chain 25966 chr12 133275309 + 46163536 46163839 L1PA5 6144 + 5839 6141 47769 46 1 0 256 chain 9715 chr12 133275309 + 46180639 46180750 L1PA2 6032 + 5917 6028 71018 111 chain 513519 chr12 133275309 + 46246036 46252481 L1PA6 6164 + 0 6155 2598 257 0 22 7 22 0 178 1 0 1869 0 1 75 0 5 152 0 10 268 314 0 548 1 0 274 0 1 691 4 0 291 2 0 589 0 9 121 0 1 29 1 0 88 1 0 457 1 2 198 0 6 6 chain 507385 chr12 133275309 + 46283516 46289645 L1PA6 6164 + 0 6159 2876 262 1 2 17 6 5 108 32 33 38 1 0 322 0 17 287 0 3 762 0 1 476 4 5 250 0 3 453 0 1 150 1 2 407 0 1 753 4 0 209 0 1 743 1 5 378 6 0 6 0 6 446 0 1 6 chain 4321 chr12 133275309 + 46386399 46386445 MADE1 96 + 0 46 89355 46 chain 217652 chr12 133275309 + 46397830 46400346 L1PA5 6144 + 3617 6143 9103 813 0 1 249 1 0 614 1 8 134 1 0 35 0 4 668 chain 47003 chr12 133275309 + 46484466 46485097 PRIMA4_LTR 623 + 0 623 30659 70 22 22 120 8 0 160 12 13 60 1 0 178 chain 34949 chr12 133275309 + 46509687 46510152 MER4A1 472 + 0 472 38057 211 22 25 11 0 5 184 1 0 36 chain 554087 chr12 133275309 + 46617497 46623643 L1PA3long 6157 + 4 6157 474 307 0 3 2077 0 2 303 0 1 3423 6 7 30 chain 27847 chr12 133275309 + 46672261 46672614 THE1A 353 + 0 353 45112 81 3 4 25 1 0 243 chain 66128 chr12 133275309 + 46706353 46707068 L1PA2 6032 + 3748 4463 24927 715 chain 515702 chr12 133275309 + 46736992 46743142 L1PA6 6164 + 0 6162 2485 27 0 1 343 0 8 11 14 13 57 1 2 38 11 10 913 0 7 740 0 4 28 0 1 198 0 1 1125 1 0 343 7 5 367 0 1 1072 1 0 43 5 6 245 1 0 547 6 0 6 chain 95255 chr12 133275309 + 46746976 46748455 L1PREC2 3366 + 1443 2819 18875 155 2 0 87 1 0 57 155 1 14 6 7 65 0 7 7 11 31 201 0 19 145 0 2 69 0 1 169 1 2 4 1 0 33 0 6 35 0 1 96 10 13 47 2 0 29 8 6 27 1 0 25 1 0 15 chain 55691 chr12 133275309 + 46755143 46755758 L1PA3long 6157 + 5542 6157 27664 615 chain 117320 chr12 133275309 + 46758145 46759682 THE1B-int 1605 + 8 1593 15994 71 0 4 154 1 4 191 0 25 173 6 7 142 0 1 552 0 3 119 32 43 96 chain 414249 chr12 133275309 + 46848914 46853638 L1PA4 6152 + 346 5077 4972 190 0 1 167 0 1 82 0 1 373 0 3 68 0 1 2456 1 0 702 0 1 685 chain 283440 chr12 133275309 + 46878372 46881822 L1PA8A 6298 + 2848 6291 7331 108 0 1 4 1 0 9 0 4 398 1 0 77 2 0 96 4 0 156 5 0 170 0 1 233 0 1 711 8 9 635 0 1 7 0 1 19 2 1 90 4 1 710 chain 41252 chr12 133275309 + 46890133 46890588 L1PA4 6152 + 4566 5021 33819 455 chain 20233 chr12 133275309 + 46919011 46919249 L1PA7 6471 + 6231 6469 56099 238 chain 99707 chr12 133275309 + 46940315 46941396 L1PA2 6032 + 4947 6028 18333 1081 chain 7097 chr12 133275309 + 46946313 46946397 Tigger3b 1229 - 319 403 77272 84 chain 130868 chr12 133275309 + 46987014 46988661 L1PA8 5853 + 3820 5853 13942 234 0 4 61 0 387 130 0 1 97 0 3 62 7 8 203 2 0 77 0 1 476 1 0 44 2 0 71 1 0 9 2 1 11 2 0 40 3 2 18 1 0 93 chain 540993 chr12 133275309 + 46991807 46997956 L1PA4 6152 + 1 6146 1277 253 1 0 326 1 0 212 4 16 18 25 8 1554 0 1 920 0 1 557 0 1 2278 chain 10012 chr12 133275309 + 47002187 47002313 Charlie1a 1436 + 1066 1192 70399 126 chain 100894 chr12 133275309 + 47010135 47011306 L1PA5 6144 + 4968 6138 18198 409 1 0 761 chain 36422 chr12 133275309 + 47017155 47017611 LTR71A 459 + 0 459 37125 43 0 4 172 0 1 225 2 0 14 chain 38656 chr12 133275309 + 47055824 47056325 LTR15 485 + 0 484 35602 111 1 0 166 0 4 58 4 0 7 12 0 93 4 0 45 chain 542791 chr12 133275309 + 47056718 47062860 L1PA4 6152 + 0 6151 1153 460 6 0 115 2 1 835 5 10 1057 0 1 476 0 6 223 0 1 1017 0 2 1096 2 3 848 chain 402540 chr12 133275309 + 47250389 47257170 L1PB1 5432 + 56 5410 5124 556 1 0 5 0 1 105 290 6 666 1 0 7 2 0 7 20 9 26 3 4 102 0 4 514 764 0 188 0 1 161 0 3 78 4 0 67 0 1 245 7 6 7 0 1 105 0 1 58 1 0 58 0 1 155 0 1 55 313 0 73 5 6 385 13 8 89 1 0 169 5 8 390 0 1 42 0 1 47 18 19 119 4 1 85 0 2 99 3 11 284 9 6 9 35 0 20 1 0 13 16 11 11 3 1 50 2 1 16 1 0 44 1 0 15 3 0 7 13 5 19 11 8 11 2 0 24 1 0 21 1 0 13 1 0 6 chain 38291 chr12 133275309 + 47293241 47293704 LTR2 463 + 0 463 35845 61 0 3 317 13 7 27 0 3 45 chain 28664 chr12 133275309 + 47296254 47296648 LTR7 482 + 0 477 43852 101 14 13 18 0 51 41 5 37 51 0 1 164 chain 87550 chr12 133275309 + 47306150 47307510 LTR12D 1347 + 0 1347 20127 158 0 1 47 18 20 39 16 16 26 95 26 56 5 8 138 2 33 70 9 0 32 0 42 23 1 0 96 19 23 11 7 14 134 23 0 9 4 0 27 1 0 34 1 0 100 0 5 159 chain 15025 chr12 133275309 + 47321659 47321846 L1MA5 2750 + 2352 2541 62236 125 1 3 61 chain 10156 chr12 133275309 + 47331850 47332359 L1PB1 5432 + 5144 5326 70094 12 2 0 3 2 0 9 2 0 37 306 0 15 2 1 16 1 0 44 1 0 15 2 0 6 20 10 14 chain 4780 chr12 133275309 + 47332362 47332439 L1PB1 5432 + 5327 5399 86795 5 1 0 12 2 0 26 1 0 21 1 0 8 chain 127973 chr12 133275309 + 47333201 47334741 LTR12C 1709 + 0 1709 14280 413 0 4 417 0 161 70 7 9 38 1 0 5 3 1 106 0 4 211 0 1 269 chain 8378 chr12 133275309 + 47354608 47354711 MLT2A2 560 + 4 107 73954 103 chain 8300 chr12 133275309 + 47385028 47385149 MER4C 627 + 0 116 74158 75 12 7 34 chain 55974 chr12 133275309 + 47422667 47423379 Tigger1 2417 + 1362 2087 27570 375 0 5 284 3 8 28 0 3 22 chain 541914 chr12 133275309 + 47426905 47432920 L1PA3long 6157 + 0 6152 1214 151 1 2 210 0 1 216 0 4 192 0 128 1937 0 1 2260 0 1 989 0 1 59 chain 38376 chr12 133275309 + 47450659 47451276 L1PB1 5432 + 4754 5370 35795 232 0 1 47 19 19 51 1 2 8 3 0 20 1 0 13 28 21 52 2 1 16 2 1 43 1 0 15 1 0 5 17 7 19 3 25 18 chain 2964 chr12 133275309 + 47451277 47451322 L1PB1 5432 + 5370 5413 100234 21 1 0 13 1 0 9 chain 28025 chr12 133275309 + 47470362 47470739 THE1C 375 + 0 375 44825 135 0 4 37 0 1 11 8 6 97 4 0 58 1 0 26 chain 23019 chr12 133275309 + 47479230 47479489 L1PA2 6032 + 5766 6025 52331 103 0 1 17 1 0 138 chain 202529 chr12 133275309 + 47497429 47499996 L1P3 4156 + 158 2735 9615 91 13 12 59 1 0 88 1 2 59 0 2 205 0 3 18 17 15 78 0 6 543 0 2 5 1 0 12 3 2 712 0 1 125 7 6 90 0 1 340 1 2 98 chain 303385 chr12 133275309 + 47500000 47503687 L1PA7 6471 + 2742 6453 6759 23 2 0 212 0 11 112 11 15 28 1 0 4 0 1 333 20 19 109 1 3 461 0 1 12 0 5 1312 0 1 143 0 1 73 1 0 392 0 7 362 4 0 71 chain 47009 chr12 133275309 + 47508194 47508731 L1PA4 6152 + 5611 6140 30656 154 9 0 324 0 1 50 chain 186999 chr12 133275309 + 47511010 47513203 L1PA5 6144 + 3952 6144 10253 676 1 0 504 0 1 27 2 1 633 3 0 190 0 9 8 6 0 143 chain 7002 chr12 133275309 + 47549745 47549863 L1MB5 1630 + 811 954 77591 79 24 49 15 chain 4589 chr12 133275309 + 47559588 47559639 MADE1 96 + 45 96 87850 51 chain 6124 chr12 133275309 + 47581164 47581261 MER85 139 + 32 139 80633 40 17 27 40 chain 12098 chr12 133275309 + 47596091 47596466 MSTA 426 + 46 424 66666 51 221 224 103 chain 461855 chr12 133275309 + 47624483 47630297 L1PA8 5853 + 50 5853 4085 21 3 1 11 1 0 9 52 16 193 19 7 143 0 4 324 0 3 501 0 20 373 1 0 29 0 1 148 1 7 45 0 4 47 2 0 68 0 1 60 2 0 185 0 4 262 4 0 218 0 3 62 5 7 79 0 1 7 12 7 13 3 7 137 0 3 127 6 7 6 1 0 172 0 1 834 5 9 750 0 4 15 12 7 71 2 3 434 1 0 43 1 0 44 2 0 70 2 1 14 2 0 5 5 7 35 2 1 19 2 1 92 chain 347820 chr12 133275309 + 47638107 47642835 L1PB1 5432 + 760 5413 5935 629 0 1 4 42 26 124 0 4 50 0 5 290 0 7 440 13 7 147 6 0 307 1 11 30 1 0 37 0 1 65 0 10 418 1 2 240 1 0 5 0 1 76 22 1 37 5 0 79 1 0 54 52 17 77 6 5 114 0 16 293 4 1 237 3 0 211 8 9 147 1 2 4 1 0 102 5 2 8 0 1 24 1 0 5 21 16 10 3 1 50 2 1 12 6 5 29 2 0 14 1 0 15 5 2 13 7 0 16 8 5 14 2 0 23 2 1 21 1 0 13 1 0 9 chain 2907 chr12 133275309 + 47641251 47641283 L1PB1 5432 - 1481 1513 100784 32 chain 8640 chr12 133275309 + 47646177 47646305 L1MCa 1829 + 969 1101 73374 67 5 9 44 0 1 6 1 0 5 chain 444289 chr12 133275309 + 47674152 47679404 L1PA6 6164 + 0 6162 4488 88 0 900 198 0 1 120 0 1 152 0 1 739 0 1 11 0 2 111 0 1 723 1 0 115 6 8 13 2 0 4 0 1 253 0 2 58 0 4 189 1 0 518 2 3 184 23 0 39 0 19 134 1 0 56 1 0 604 0 1 649 0 1 98 2 0 11 1 4 145 chain 5042 chr12 133275309 + 47873669 47873729 THE1D 372 + 312 372 85459 60 chain 43271 chr12 133275309 + 47958710 47959545 MER41A 554 + 0 554 32598 331 7 0 65 0 1 38 278 3 116 chain 9295 chr12 133275309 + 47959545 47959657 MSTA-int 1630 + 1505 1617 71917 112 chain 3438 chr12 133275309 + 48080193 48080229 MER3 215 - 5 41 95752 36 chain 9806 chr12 133275309 + 48115677 48115801 MER4E 760 + 634 757 70808 56 1 0 67 chain 23171 chr12 133275309 + 48196708 48196998 AluSp 311 + 0 282 52118 49 12 4 229 chain 104446 chr12 133275309 + 48206308 48207708 L1PA16 3655 + 1487 2883 17766 35 0 1 175 0 1 24 0 2 70 1 0 58 4 5 13 0 1 72 0 1 52 2 0 242 1 0 21 8 0 10 6 8 388 26 25 192 chain 140301 chr12 133275309 + 48208937 48210492 L1PA3long 6157 + 4594 6150 13077 712 0 1 60 1 0 639 4 5 139 chain 182043 chr12 133275309 + 48227258 48230284 L1PB1 5432 + 2589 5423 10495 150 0 10 84 3 1 57 0 3 112 0 1 503 0 4 204 18 19 130 1 0 95 0 1 89 0 1 411 24 30 62 5 6 65 28 47 24 0 2 187 0 2 179 244 37 9 3 0 24 1 0 8 1 0 12 5 1 9 2 0 52 20 18 43 39 27 19 7 5 14 2 0 24 1 0 21 1 0 12 2 1 14 1 0 5 chain 4375 chr12 133275309 + 48231996 48232052 MER5B 177 + 115 170 89027 17 1 0 38 chain 4840 chr12 133275309 + 48240042 48240099 L1PA8 5853 + 5796 5853 86473 57 chain 49630 chr12 133275309 + 48241500 48245016 Tigger1 2417 + 4 2050 29709 13 0 1 31 0 4 130 2753 1281 361 31 27 76 4 5 117 chain 71774 chr12 133275309 + 48253145 48254271 L1MA2 4263 + 2968 4111 23603 53 3 2 20 1 12 46 6 13 131 0 2 5 2 0 61 0 1 89 0 18 80 19 20 57 13 9 20 0 6 4 14 0 45 1 0 126 8 15 5 3 0 49 1 0 99 2 1 10 1 0 91 20 13 34 1 0 6 chain 27461 chr12 133275309 + 48282354 48282765 MER1A 529 + 100 495 45623 190 1 0 52 4 0 44 28 6 32 0 7 25 6 10 29 chain 62972 chr12 133275309 + 48396075 48396807 L1PA5 6144 + 5413 6144 25637 392 1 2 325 3 1 11 chain 284204 chr12 133275309 + 48427560 48431274 L1PB1 5432 + 1700 5413 7314 146 1 5 565 0 3 73 2 0 348 1 0 43 0 2 167 1 2 201 1 0 477 0 4 6 0 1 208 1 2 261 0 1 48 0 10 332 0 4 19 3 0 84 1 0 8 0 5 87 4 3 69 10 11 208 1 2 9 3 0 24 0 3 5 5 0 12 18 12 49 1 0 13 6 5 44 1 0 14 3 0 12 5 0 20 16 13 6 2 0 24 1 0 21 1 0 13 1 0 9 chain 465819 chr12 133275309 + 48433779 48439111 L1PA4 6152 + 3 5354 3968 1068 0 1 881 1 4 822 0 4 475 0 5 573 1 0 829 1 0 461 1 0 4 0 1 170 1 0 25 1 10 18 chain 22768 chr12 133275309 + 48449819 48450120 THE1A 353 + 13 353 52722 97 0 33 59 1 0 24 6 13 114 chain 194080 chr12 133275309 + 48450208 48452987 L1PA11 4918 + 1893 4629 9920 63 0 1 4 1 0 4 24 23 207 4 3 62 3 7 10 0 4 52 0 1 375 3 4 6 7 0 185 0 1 34 5 4 6 0 1 35 8 1 106 2 0 121 0 1 185 1 2 23 6 8 86 6 10 680 19 1 127 4 0 59 3 2 10 2 0 68 2 4 9 1 0 11 46 43 12 1 0 13 40 28 11 9 5 18 chain 104571 chr12 133275309 + 48463235 48464693 L1PA13 3608 + 2031 3482 17749 279 3 9 36 5 6 41 28 16 60 1 0 177 3 1 157 0 5 20 0 1 168 1 5 120 1 0 28 1 0 114 3 4 56 1 0 18 0 1 38 9 6 47 14 10 14 1 0 14 chain 391738 chr12 133275309 + 48474261 48478717 L1PA4 6152 + 6 4458 5295 309 5 6 139 6 0 120 1 0 460 0 2 194 1 0 639 0 1 2582 chain 45592 chr12 133275309 + 48506817 48507421 LTR14B 630 + 9 630 31266 47 1 0 269 10 28 171 1 2 22 1 0 82 chain 113141 chr12 133275309 + 48507624 48509296 HERVK14-int 1672 + 1 1665 16656 29 1 0 11 1 0 49 1 0 8 0 1 188 19 18 34 2 0 37 0 4 17 5 6 4 1 0 160 1 0 34 13 12 206 1 0 90 3 12 61 1 0 79 1 0 3 1 0 8 2 0 32 2 1 104 1 0 98 2 1 64 0 13 12 13 0 19 1 0 63 11 10 19 2 0 11 1 0 12 22 23 105 1 0 6 chain 31791 chr12 133275309 + 48535535 48536097 L1PA15 4387 + 3812 4355 40506 62 0 1 7 11 10 41 1 0 163 10 9 26 3 2 51 2 1 17 4 0 11 5 4 38 30 27 32 3 1 11 8 3 26 chain 7230 chr12 133275309 + 48540152 48540239 LTR69 548 + 0 87 76862 87 chain 108030 chr12 133275309 + 48551212 48552504 SVA_C 1631 + 12 1631 17321 8 0 1 36 13 7 447 13 14 216 0 336 241 1 0 296 4 0 17 chain 245072 chr12 133275309 + 48575804 48578480 L1PA3long 6157 + 3481 6157 8348 1190 1 0 635 0 1 850 chain 11085 chr12 133275309 + 48592618 48592955 MER21B 843 + 0 315 68437 12 10 0 2 4 0 15 50 24 22 18 15 13 0 64 90 54 19 8 9 0 16 0 1 14 chain 59122 chr12 133275309 + 48592985 48593740 MER4E 760 + 0 760 26628 333 6 12 24 0 2 8 0 4 63 4 8 79 13 1 26 10 11 189 chain 28699 chr12 133275309 + 48603983 48604372 MLT2A1 477 + 0 385 43803 60 9 7 101 5 2 9 0 1 15 1 0 9 0 1 180 chain 112117 chr12 133275309 + 48641383 48642867 SVA_A 1864 + 20 1487 16798 557 0 2 110 3 0 8 40 0 28 3 0 38 2 1 122 1 0 56 14 48 30 4 1 77 3 1 36 2 0 9 41 0 26 3 0 73 38 84 160 chain 22742 chr12 133275309 + 48697556 48697854 AluY 311 + 18 303 52769 108 0 2 160 15 0 15 chain 16143 chr12 133275309 + 48703040 48705023 MER1A 529 + 242 521 60823 83 1699 0 128 40 37 19 1 0 8 1 0 4 chain 138461 chr12 133275309 + 48724026 48725580 SVA_D 2077 + 0 2077 13223 19 5 0 541 0 40 125 0 3 34 3 0 146 1 0 12 1 490 667 chain 26076 chr12 133275309 + 48791126 48791433 AluYb8 318 + 0 305 47614 123 3 1 181 chain 146646 chr12 133275309 + 48841438 48843316 SVA_D 2077 + 14 2077 12564 11 1 0 3 1 0 409 0 156 131 0 3 31 6 3 147 9 4 34 20 9 15 2 103 122 148 0 108 0 98 658 1 0 13 3 0 5 chain 8976 chr12 133275309 + 48842422 48842528 SVA_D 2077 + 1187 1420 55325 27 0 127 79 chain 4813 chr12 133275309 + 48880831 48880889 MER41D 557 + 19 77 86636 58 chain 7374 chr12 133275309 + 48975553 48975645 U6 107 + 11 106 76463 33 0 3 59 chain 18347 chr12 133275309 + 49077988 49078204 AluSg7 307 + 82 299 58306 49 0 1 167 chain 20862 chr12 133275309 + 49078823 49079089 AluSc5 308 + 6 274 55296 103 1 0 22 2 1 118 0 4 20 chain 92379 chr12 133275309 + 49115640 49116673 LTR5A 1029 + 0 1029 19289 55 3 0 92 1 0 882 chain 41241 chr12 133275309 + 49149716 49151158 Tigger1 2417 + 54 975 33821 10 3 0 127 578 374 80 311 0 17 3 0 313 chain 3330 chr12 133275309 + 49156726 49156765 LTR62 707 + 12 51 96757 39 chain 10925 chr12 133275309 + 49160474 49160611 LTR62 707 + 564 702 68657 12 0 1 125 chain 11494 chr12 133275309 + 49160612 49160785 MER51B 395 + 0 223 67757 63 7 1 60 8 64 35 chain 11476 chr12 133275309 + 49259078 49259234 Tigger3b 1229 + 833 1011 67781 40 1 11 108 0 12 7 chain 29246 chr12 133275309 + 49458951 49459732 LTR71A 459 + 0 457 42972 101 0 3 74 23 24 123 13 14 38 336 6 53 4 5 16 chain 10026 chr12 133275309 + 49495572 49495703 MER85 139 + 9 139 70366 73 7 6 51 chain 7135 chr12 133275309 + 49596391 49596477 MER66D 528 + 348 433 77152 9 1 0 76 chain 37058 chr12 133275309 + 49714036 49714523 L1PA7 6471 + 5986 6466 36702 36 19 12 103 0 1 259 13 15 47 3 0 7 chain 21771 chr12 133275309 + 49715069 49715351 AluJb 308 + 8 288 54137 117 3 1 162 chain 41576 chr12 133275309 + 49724528 49725329 L1PB1 5432 + 4649 5423 33640 57 1 2 50 19 6 47 25 27 4 1 0 10 21 32 93 1 6 115 16 16 24 1 0 4 1 0 14 2 0 3 2 0 9 2 0 52 3 1 9 7 6 45 2 0 21 20 10 10 2 0 10 1 0 12 2 0 26 1 0 21 1 0 13 1 0 14 1 0 5 chain 4922 chr12 133275309 + 49727839 49727968 L1MB7 1623 + 1307 1429 86043 16 47 42 5 1 0 53 1 0 6 chain 37550 chr12 133275309 + 49733989 49734451 LTR2 463 + 0 463 36372 362 12 13 88 chain 309688 chr12 133275309 + 49735995 49739721 Harlequin-int 5206 + 133 3871 6619 9 9 0 158 2 0 63 12 11 110 8 0 63 0 2 366 0 3 93 1 0 198 0 7 659 6 5 152 4 21 209 1 0 186 0 4 35 0 6 946 4 1 122 0 2 5 8 5 5 0 1 217 1 0 74 chain 33952 chr12 133275309 + 49740127 49740561 LTR2 463 + 0 463 38745 223 1 6 16 0 24 91 14 15 7 1 0 81 chain 9815 chr12 133275309 + 49745795 49745931 MER47A 366 + 146 276 70793 95 5 0 12 1 0 23 chain 3006 chr12 133275309 + 49777686 49777720 MIR 256 + 196 230 99782 34 chain 3365 chr12 133275309 + 49811032 49811083 MER3 215 + 93 139 96427 38 5 0 8 chain 12523 chr12 133275309 + 49818164 49818376 L1MA7 2200 + 1031 1258 65941 31 21 16 59 1 17 44 8 12 48 chain 156880 chr12 133275309 + 49860208 49861988 SVA_D 2077 + 10 2067 11948 166 0 4 710 0 269 28 0 1 60 49 0 96 0 49 45 0 2 244 0 1 382 chain 6614 chr12 133275309 + 49924566 49924731 MER53 195 + 13 189 78924 50 67 78 48 chain 44914 chr12 133275309 + 49981399 49982272 PABL_A 660 + 0 629 31630 139 303 0 77 0 45 62 0 5 105 0 8 182 0 1 5 chain 8423 chr12 133275309 + 50023760 50023879 L1PB4 2604 + 2143 2269 73854 97 6 13 16 chain 5294 chr12 133275309 + 50144355 50144422 MER5A1 166 + 98 165 84226 67 chain 5134 chr12 133275309 + 50151317 50151385 MADE1 96 + 0 93 84994 22 1 26 45 chain 32498 chr12 133275309 + 50156899 50157335 MLT2A1 477 + 0 477 39944 169 8 15 201 4 0 10 2 40 42 chain 25029 chr12 133275309 + 50168662 50168957 AluY 311 + 0 301 49233 12 0 3 107 0 1 9 0 1 142 0 1 25 chain 30506 chr12 133275309 + 50229356 50229703 L1PA5 6144 + 5798 6143 41561 173 3 1 171 chain 39137 chr12 133275309 + 50257338 50257827 LTR3B_ 500 + 0 500 35258 150 6 12 213 0 5 120 chain 51921 chr12 133275309 + 50300525 50301105 L1PA4 6152 + 5573 6152 28901 325 1 0 254 chain 236804 chr12 133275309 + 50322492 50325602 HERVL-int 5654 + 2818 5654 8549 114 0 1 573 0 4 137 0 1 270 294 0 838 0 2 91 1 0 125 0 9 50 7 0 43 0 1 353 0 1 110 0 1 4 1 0 30 0 3 47 0 6 22 chain 33040 chr12 133275309 + 50325602 50326044 MLT2A1 477 + 0 477 39484 137 0 1 30 1 5 31 9 0 181 3 43 30 1 0 19 chain 64784 chr12 133275309 + 50373600 50374310 L1PA3long 6157 + 5446 6156 25239 710 chain 5098 chr12 133275309 + 50403486 50403551 Charlie4a 502 + 341 406 85173 65 chain 23285 chr12 133275309 + 50687561 50687897 L1PA8 5853 + 5520 5853 51953 25 0 1 18 1 0 44 2 0 68 0 1 10 7 6 47 2 1 21 1 0 69 0 2 14 1 0 6 chain 39169 chr12 133275309 + 50765550 50766086 MER41A 554 + 0 554 35235 118 3 6 70 13 23 46 0 6 158 1 0 127 chain 149481 chr12 133275309 + 50768829 50771593 MER41-int 2638 + 128 2627 12388 42 30 14 29 1 0 4 3 1 30 1 0 5 17 6 31 9 5 93 3 0 57 338 401 16 7 0 7 0 7 131 0 1 223 0 2 85 0 9 509 13 12 56 0 1 321 3 5 91 320 0 83 1 14 25 8 10 100 0 1 72 chain 41771 chr12 133275309 + 50771605 50772153 MER41A 554 + 0 554 33511 35 6 8 124 0 1 298 23 25 50 0 1 12 chain 16022 chr12 133275309 + 50815137 50815358 Tigger3b 1229 + 339 555 61001 20 1 0 142 10 6 48 chain 74013 chr12 133275309 + 50832036 50836585 L1PB1 5432 + 3453 5421 23089 215 0 3 63 0 2 539 3241 731 55 96 53 24 8 6 12 7 3 10 3 1 50 4 2 13 8 7 16 3 4 17 2 1 12 6 4 15 14 4 11 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 12 2 0 5 chain 5041 chr12 133275309 + 50839495 50839566 MER3 215 + 78 165 85461 57 1 17 13 chain 411871 chr12 133275309 + 50866714 50873318 L1PB1 5432 + 34 5413 5007 204 11 10 27 9 10 117 1 0 206 0 4 107 0 6 135 0 1 315 0 1 217 2 1 7 4 0 3 10 0 14 0 1 648 7 8 345 7 5 74 2 0 214 1 0 4 0 1 384 452 0 558 11 19 25 0 1 4 4 3 662 0 2 103 13 18 124 0 2 191 5 0 288 749 2 9 1 0 24 2 1 8 1 0 10 5 1 9 2 0 53 19 17 43 1 0 16 2 0 6 1 0 9 9 0 16 3 1 4 1 0 14 2 0 24 1 0 17 8 7 10 1 0 9 chain 7143 chr12 133275309 + 50922939 50923019 LTR12F 595 + 402 482 77126 80 chain 5520 chr12 133275309 + 50934031 50934093 LTR72B 493 + 385 447 83157 62 chain 45732 chr12 133275309 + 50944901 50945445 L1P1 4361 + 3797 4341 31195 158 0 3 192 1 0 155 1 0 23 2 1 12 chain 545880 chr12 133275309 + 50972512 50978652 L1PA5 6144 + 0 6144 976 995 0 1 26 0 1 2147 1 0 915 4 0 170 0 3 40 1 0 989 0 3 225 0 2 627 chain 3253 chr12 133275309 + 51001523 51001585 MER41B 635 + 482 545 97458 12 14 15 36 chain 10084 chr12 133275309 + 51005824 51006011 MER4D1 891 + 4 197 70231 27 1 0 11 16 17 51 3 0 5 9 12 46 0 6 18 chain 21038 chr12 133275309 + 51006034 51006301 AluSp 311 + 23 284 55073 76 6 0 185 chain 3439 chr12 133275309 + 51010998 51011038 U7 62 + 0 40 95738 40 chain 68710 chr12 133275309 + 51078583 51079369 L1PA5 6144 + 5345 6144 24282 341 1 0 322 0 12 110 1 3 11 chain 24264 chr12 133275309 + 51131050 51131348 AluY 311 + 3 298 50397 120 9 4 148 0 2 21 chain 66574 chr12 133275309 + 51147567 51148418 L1PB1 5432 + 4241 5103 24802 144 1 0 116 7 10 41 0 3 71 4 0 22 0 1 80 0 4 143 0 1 14 0 1 4 1 0 182 0 4 21 chain 8520 chr12 133275309 + 51162901 51163006 U6 107 + 1 106 73639 105 chain 8974 chr12 133275309 + 51208961 51209127 MLT1A0 366 + 181 361 72620 17 16 20 23 4 13 22 12 13 72 chain 14979 chr12 133275309 + 51230507 51230729 MER30 238 + 1 238 62289 78 0 4 23 5 0 7 2 15 67 4 7 36 chain 10056 chr12 133275309 + 51370539 51370681 L1MB3 1562 + 1272 1425 70294 79 1 0 17 5 18 35 1 0 4 chain 30948 chr12 133275309 + 51372846 51373222 THE1C-int 1605 + 1218 1593 41176 205 1 0 31 0 1 81 1 0 57 chain 82534 chr12 133275309 + 51543678 51544712 MER11C 1089 + 0 1054 21113 246 0 9 62 0 4 369 1 5 4 1 0 38 0 1 127 0 1 28 4 7 19 1 0 134 chain 7766 chr12 133275309 + 51581476 51581569 Tigger1 2417 + 425 518 75446 93 chain 52776 chr12 133275309 + 51582943 51583551 L1PA6 6164 + 5554 6162 28648 608 chain 5975 chr12 133275309 + 51640269 51640373 Tigger1 2417 + 2273 2360 81177 62 2 0 4 13 0 4 2 0 17 chain 128331 chr12 133275309 + 51644511 51645965 SVA_D 2077 + 311 2075 14241 324 0 76 12 0 3 35 3 0 142 2 0 15 1 137 293 1 98 282 0 3 344 chain 14126 chr12 133275309 + 51650579 51650737 MER9a2 513 + 2 160 63413 158 chain 7604 chr12 133275309 + 51812320 51812424 MIRb 242 + 68 167 75860 75 6 1 23 chain 40518 chr12 133275309 + 51884581 51885164 LTR10A 586 + 0 561 34300 111 4 3 64 1 2 18 28 0 8 5 6 26 0 1 42 1 2 135 7 10 133 chain 3440 chr12 133275309 + 51895512 51895554 MIRb 242 + 20 62 95729 42 chain 9082 chr12 133275309 + 51987656 51987763 U6 107 + 0 107 72374 107 chain 23823 chr12 133275309 + 51988187 51988476 AluSc 308 + 0 289 51065 29 1 0 164 0 1 95 chain 7328 chr12 133275309 + 52118870 52118964 PABL_A 660 + 0 102 76574 81 1 9 12 chain 144141 chr12 133275309 + 52409037 52410700 SVA_D 2077 + 0 2076 12764 544 0 40 103 0 40 171 1 0 4 37 144 6 1 0 68 1 79 21 1 0 106 0 147 503 0 4 96 chain 3296 chr12 133275309 + 52409860 52409897 SVA_D 2077 + 1262 1299 52520 37 chain 6965 chr12 133275309 + 52420797 52420915 MER3 215 + 97 214 77725 72 23 22 23 chain 6950 chr12 133275309 + 52461844 52462108 L1PBa 3878 + 158 287 77775 5 1 0 50 70 0 3 62 0 19 18 16 36 chain 20174 chr12 133275309 + 52477775 52478157 MSTA 426 + 5 426 56166 83 21 41 7 0 4 76 45 41 43 25 44 17 0 1 4 1 0 60 chain 5509 chr12 133275309 + 52505668 52505830 MER8 282 + 0 235 83204 51 35 143 10 35 0 31 chain 17520 chr12 133275309 + 52555422 52555615 L1PA8A 6298 + 6086 6279 59221 193 chain 17358 chr12 133275309 + 52635588 52635952 L1PB1 5432 + 5093 5427 59406 10 3 0 12 1 0 23 1 0 9 23 23 50 2 1 14 2 1 59 26 13 19 7 4 15 2 0 24 1 0 22 1 0 12 1 0 18 2 0 5 chain 64158 chr12 133275309 + 52737610 52738329 L1PA4 6152 + 5422 6141 25379 569 3 0 5 0 2 40 0 1 102 chain 175163 chr12 133275309 + 52854501 52856621 L1PA6 6164 + 4046 6160 10821 169 0 2 151 0 4 271 3 0 349 0 1 198 2 1 126 1 5 254 0 1 76 12 0 348 2 0 5 1 4 34 1 0 24 1 2 78 3 0 11 chain 24575 chr12 133275309 + 52890762 52891054 L1PA5 6144 + 5855 6139 49887 183 8 0 101 chain 22392 chr12 133275309 + 52966733 52967026 AluSx4 309 + 6 288 53287 125 11 1 123 1 0 33 chain 9303 chr12 133275309 + 52968315 52968489 L1MA3 4352 + 4177 4352 71905 80 1 8 17 2 1 5 1 0 21 25 21 22 chain 22321 chr12 133275309 + 53083504 53083795 AluSp 311 + 11 297 53379 58 6 0 204 8 9 15 chain 5963 chr12 133275309 + 53089552 53089702 MLT1C 463 + 29 179 81219 20 2 0 5 1 2 44 52 53 26 chain 3258 chr12 133275309 + 53093215 53093262 L1PA8 5853 + 5671 5718 97386 11 1 0 5 0 2 5 1 0 24 chain 9986 chr12 133275309 + 53164781 53165012 L1MB3 1562 + 675 907 70453 49 89 91 26 1 0 66 chain 6998 chr12 133275309 + 53201920 53202046 L1MB5 1630 + 249 370 77602 32 6 1 18 2 0 17 10 11 30 0 1 11 chain 4619 chr12 133275309 + 53258654 53258765 MIR 256 + 104 214 87699 36 23 21 23 13 14 16 chain 10177 chr12 133275309 + 53280309 53280448 MER75 514 + 36 178 70063 55 5 8 79 chain 23764 chr12 133275309 + 53358399 53358696 AluSp 311 + 0 297 51172 25 2 0 255 0 2 15 chain 9644 chr12 133275309 + 53362399 53362505 AluSp 311 + 28 134 71174 106 chain 26409 chr12 133275309 + 53373228 53373523 AluYk4 311 + 6 303 47108 268 0 2 27 chain 60910 chr12 133275309 + 53437640 53438304 SVA_C 1631 + 967 1630 26134 51 1 0 612 chain 28986 chr12 133275309 + 53438685 53438996 AluYa5 310 + 0 310 43354 123 1 0 187 chain 14589 chr12 133275309 + 53526256 53526512 Tigger2 2703 + 2306 2567 62812 59 44 47 29 4 3 47 0 3 73 chain 11867 chr12 133275309 + 53564832 53565000 MER30 238 + 58 238 67080 48 5 0 10 1 19 33 1 0 70 chain 116285 chr12 133275309 + 53645518 53646859 L1PA6 6164 + 4811 6162 16170 27 0 4 910 0 5 31 0 1 373 chain 10249 chr12 133275309 + 53691792 53691918 THE1D 372 + 246 372 69900 126 chain 26789 chr12 133275309 + 53851637 53851917 AluYb8 318 + 26 306 46558 280 chain 11286 chr12 133275309 + 53886643 53886789 L1PA8 5853 + 5698 5843 68103 42 2 1 19 1 0 26 0 1 56 chain 10307 chr12 133275309 + 53921478 53921661 L1PA8 5853 + 5680 5853 69792 10 1 0 40 36 34 17 7 0 72 chain 25141 chr12 133275309 + 54298231 54298530 AluSp 311 + 6 305 49054 299 chain 11202 chr12 133275309 + 54584445 54584576 L1PA16 3655 + 3447 3578 68243 131 chain 23190 chr12 133275309 + 54626469 54626813 THE1B 368 + 0 368 52095 44 0 15 110 1 0 29 35 45 125 chain 148033 chr12 133275309 + 54637952 54639631 L1PA6 6164 + 4468 6151 12478 31 0 2 300 0 2 1348 chain 14984 chr12 133275309 + 54669235 54669403 L1PA3long 6157 + 5989 6157 62284 168 chain 85476 chr12 133275309 + 54693970 54695059 L1PA8 5853 + 4738 5846 20539 188 0 9 70 0 1 4 6 4 55 6 7 241 0 17 228 1 0 47 2 0 69 12 10 51 3 2 19 1 0 86 chain 30873 chr12 133275309 + 54714734 54715435 L1P3 4156 + 3599 3997 41247 222 325 22 154 chain 107661 chr12 133275309 + 54746177 54748656 L1PB1 5432 + 3618 5421 17371 89 373 70 312 338 0 23 7 0 6 5 13 138 3 13 222 12 17 88 8 11 8 3 0 140 11 14 30 38 43 127 5 6 115 4 0 11 22 0 9 12 0 10 1 0 11 1 0 14 17 11 51 2 1 16 1 0 34 98 82 14 0 6 20 1 0 11 1 0 17 chain 38262 chr12 133275309 + 54761626 54762060 L1PA5 6144 + 5704 6138 35869 434 chain 530877 chr12 133275309 + 54776769 54782882 L1PA5 6144 + 3 6140 1793 646 0 7 10 7 0 282 0 4 335 0 8 831 0 3 1307 0 6 68 1 0 720 1 2 559 0 1 308 0 1 144 0 1 894 chain 563973 chr12 133275309 + 54788573 54794616 L1HS 6032 + 3 6032 113 6015 14 0 14 chain 63848 chr12 133275309 + 54799475 54800215 L1PA5 6144 + 5132 5874 25443 511 1 0 5 1 2 125 0 1 83 0 1 14 chain 105893 chr12 133275309 + 54851331 54852515 L1PA4 6152 + 3810 4998 17579 19 0 1 475 1 0 46 0 4 643 chain 15623 chr12 133275309 + 54898557 54898800 L1PA8 5853 + 5614 5853 61501 68 1 0 11 10 8 14 5 6 19 2 1 19 1 0 93 chain 540246 chr12 133275309 + 54900418 54906528 L1PA4 6152 + 6 6151 1325 964 0 1 4 2 1 141 0 15 1570 0 3 594 1 0 434 0 12 195 0 1 413 0 4 768 0 1 1024 chain 5275 chr12 133275309 + 54909585 54909649 L1MA4 2864 + 99 163 84308 64 chain 25520 chr12 133275309 + 54927386 54927744 THE1B 368 + 0 368 48453 169 1 0 29 35 45 84 0 1 40 chain 18292 chr12 133275309 + 55090865 55091095 L1PA6 6164 + 5884 6162 58371 171 0 47 44 0 1 15 chain 26995 chr12 133275309 + 55095147 55095449 L1PA4 6152 + 5838 6140 46280 302 chain 73655 chr12 133275309 + 55119584 55120477 L1PA7 6471 + 5572 6466 23182 49 2 1 432 0 1 375 0 1 35 chain 33933 chr12 133275309 + 55124538 55125680 LTR12_ 688 + 0 675 38762 239 12 35 28 15 17 27 110 8 49 542 102 106 0 50 14 chain 19861 chr12 133275309 + 55172172 55172416 THE1B-int 1605 + 27 272 56597 107 0 1 137 chain 9827 chr12 133275309 + 55173941 55174099 MER61-int 3695 + 2518 2678 70772 71 33 35 54 chain 11021 chr12 133275309 + 55184054 55184276 L1PB1 5432 + 5222 5422 68525 14 1 0 45 1 0 15 1 0 6 17 6 19 28 23 20 1 0 21 1 0 13 1 0 18 chain 441490 chr12 133275309 + 55210434 55215393 L1PA3long 6157 + 8 6157 4545 546 1 2 903 2 1 392 0 1190 3115 chain 110563 chr12 133275309 + 55225416 55226617 L1PA3long 6157 + 4207 5408 17001 1201 chain 73919 chr12 133275309 + 55255984 55256861 MER11D 897 + 0 897 23115 281 2 0 306 0 23 87 1 2 163 3 1 34 chain 110595 chr12 133275309 + 55268057 55269577 THE1B-int 1605 + 0 1600 16994 25 3 0 5 2 4 254 0 54 90 0 25 88 5 8 228 22 18 56 12 13 19 0 1 92 0 1 24 19 18 281 0 1 4 1 0 127 0 1 163 chain 25125 chr12 133275309 + 55269582 55269940 THE1B 368 + 0 368 49078 44 8 23 107 1 0 26 9 1 13 8 12 142 chain 151556 chr12 133275309 + 55300951 55302614 L1PA3long 6157 + 4479 6142 12250 1663 chain 404622 chr12 133275309 + 55303967 55309162 L1PA8 5853 + 546 5839 5097 111 0 1 113 9 12 867 1 0 44 0 1 12 4 9 186 0 6 284 1 3 136 0 16 157 4 0 121 7 3 110 24 10 8 0 14 111 0 1 4 27 25 28 3 4 30 0 3 7 8 7 26 7 8 190 1 0 604 6 12 184 0 2 628 6 62 16 0 1 50 0 14 66 20 21 17 1 4 8 2 0 106 0 2 553 1 0 44 2 0 71 29 22 39 2 1 19 1 0 79 chain 64056 chr12 133275309 + 55325274 55326056 LTR17 781 + 0 773 25401 176 0 1 121 10 0 29 0 1 288 1 0 157 chain 27788 chr12 133275309 + 55327875 55328294 LTR8 732 + 39 527 45196 68 11 14 27 17 55 109 9 36 8 0 1 170 chain 75202 chr12 133275309 + 55333430 55334399 LTR5_Hs 974 + 0 974 22793 289 0 1 177 0 1 188 1 0 163 16 22 12 20 18 103 chain 552260 chr12 133275309 + 55344249 55350267 L1PA2 6032 + 0 6025 594 2568 0 1 914 1 7 2535 chain 509412 chr12 133275309 + 55354942 55361356 L1PA7 6471 + 13 6438 2798 52 1 2 129 21 21 44 11 16 132 51 33 11 0 12 149 1 0 4 2 4 423 0 1 288 7 8 4 1 0 412 0 1 393 0 1 366 0 2 117 1 2 704 0 2 5 7 6 140 1 0 738 0 1 165 3 11 145 1 0 859 1 0 59 0 1 16 3 1 124 18 18 5 1 0 64 1 0 734 chain 12817 chr12 133275309 + 55366298 55366437 L1PA2 6032 + 5886 6025 65421 139 chain 8291 chr12 133275309 + 55371756 55371849 L1PA7 6471 + 6326 6419 74185 93 chain 3736 chr12 133275309 + 55371849 55371894 L1PA7 6471 + 6422 6467 93350 45 chain 223202 chr12 133275309 + 55432091 55434562 L1PA3long 6157 + 3684 6157 8953 1630 0 1 199 0 1 642 chain 519219 chr12 133275309 + 55459315 55465456 L1PA6 6164 + 0 6158 2303 787 0 17 818 0 1 8 11 5 546 1 0 143 0 1 39 2 1 20 10 0 15 0 3 387 2 1 176 2 3 72 0 1 145 0 1 330 0 1 9 1 0 255 3 2 514 0 2 69 0 2 278 0 5 640 0 4 684 2 0 5 0 2 117 1 0 49 chain 550680 chr12 133275309 + 55484008 55490018 L1PA2 6032 + 0 6016 693 2945 0 1 679 0 1 1605 0 1 39 0 3 742 chain 21241 chr12 133275309 + 55516519 55517184 L1M1 2793 + 540 1111 54829 15 2 0 7 4 1 7 1 0 9 1 0 11 144 73 23 156 143 10 1 0 54 11 8 102 8 9 99 chain 22870 chr12 133275309 + 55517635 55517924 THE1A-int 1579 + 0 282 52549 217 7 0 65 chain 121312 chr12 133275309 + 55518333 55519805 L1P1 4361 + 1 1474 15278 662 0 1 179 1 4 9 3 0 618 chain 228988 chr12 133275309 + 55519805 55522331 L1PA3long 6157 + 3628 6157 8777 156 0 1 1366 0 1 231 0 1 773 chain 36190 chr12 133275309 + 55527902 55528947 L1PB1 5432 + 4764 5427 37280 339 479 121 12 1 0 41 7 6 13 14 1 30 6 4 15 0 5 6 8 1 12 1 0 21 1 0 13 1 0 18 2 0 5 chain 56831 chr12 133275309 + 55531034 55531737 L1PA7 6471 + 5469 6180 27316 152 0 3 10 1 0 64 1 3 17 0 3 8 1 2 449 chain 22564 chr12 133275309 + 55531738 55532025 L1PA7 6471 + 6182 6466 53023 277 3 0 7 chain 128740 chr12 133275309 + 55532066 55533833 L1PBa 3878 + 892 2776 14185 92 3 1 6 1 0 8 0 3 37 0 2 50 0 1 165 0 48 15 7 20 112 1 0 162 3 1 608 12 13 146 6 7 107 3 6 24 10 58 66 3 1 49 0 4 13 0 1 58 chain 279298 chr12 133275309 + 55534053 55538335 L1PBa1 4058 + 57 4017 7441 18 5 6 119 13 14 18 1 0 174 1 5 6 4 0 11 8 6 174 25 23 25 1 2 275 1 0 41 25 22 103 10 9 132 0 1 109 8 11 40 0 4 91 2 1 88 2 0 17 1 0 65 1 0 283 0 1 80 8 10 153 0 1 244 1 0 62 7 14 113 0 4 192 0 1 43 318 0 204 0 1 178 0 1 83 0 2 45 8 9 39 4 5 148 8 15 67 1 0 7 1 0 70 2 0 41 0 1 4 1 0 52 13 11 17 1 0 9 15 8 10 2 0 7 0 1 11 14 9 14 5 4 12 12 9 5 1 0 5 1 0 10 1 0 16 1 0 19 chain 7250 chr12 133275309 + 55558797 55558985 L1M3e 1964 + 38 224 76812 84 84 82 20 chain 525867 chr12 133275309 + 55560427 55566502 L1PA3long 6157 + 1 6155 2007 5 3 0 704 1 8 115 26 9 49 0 1 89 0 1 794 1 94 433 0 1 2047 0 2 1216 5 0 255 1 0 331 chain 174577 chr12 133275309 + 55586796 55589225 L1PB1 5432 + 3041 5404 10864 324 0 1 190 1 2 4 1 0 104 0 1 60 3 5 95 0 4 125 4 0 30 0 1 119 10 0 98 2 0 111 0 1 115 1 0 4 0 2 136 0 1 55 5 0 185 12 0 8 7 19 160 0 1 100 1 0 12 29 0 20 1 0 13 1 0 9 6 2 11 3 1 50 2 1 16 1 0 44 1 0 15 1 0 5 59 45 26 1 0 19 1 0 13 chain 532527 chr12 133275309 + 55589937 55595956 L1PA3long 6157 + 0 6152 1730 153 1 2 613 8 136 651 0 1 125 0 2 51 0 4 79 0 1 485 0 1 714 3 0 501 0 1 768 0 1 131 1 0 1404 1 0 261 2 0 67 chain 430517 chr12 133275309 + 55598092 55603069 L1PA4 6152 + 6 5003 4740 72 0 2 77 12 18 532 1 2 534 0 1 11 0 8 688 0 1 345 0 1 22 7 5 1565 0 2 1111 chain 19218 chr12 133275309 + 55604202 55604512 L1PA13 3608 + 3205 3501 57331 68 2 0 59 11 10 49 8 5 48 8 4 18 1 0 26 3 0 9 chain 17807 chr12 133275309 + 55649852 55650080 THE1C-int 1605 + 0 281 58885 14 3 2 142 0 54 69 chain 14636 chr12 133275309 + 55677682 55677870 L1PA5 6144 + 5955 6144 62756 38 1 3 136 2 1 11 chain 22366 chr12 133275309 + 55689751 55690003 L1PA3long 6157 + 4775 5027 53320 252 chain 103451 chr12 133275309 + 55690003 55691129 L1PA3long 6157 + 5028 6157 17890 844 0 3 282 chain 27655 chr12 133275309 + 55714230 55714536 AluYa5 310 + 0 297 45389 126 6 0 166 3 0 5 chain 12456 chr12 133275309 + 55758731 55758892 MSTA 426 + 256 414 66056 139 3 0 19 chain 22717 chr12 133275309 + 55764253 55764548 AluSp 311 + 11 299 52805 30 29 22 236 chain 16863 chr12 133275309 + 55871220 55871432 MLT2A1 477 + 224 477 59956 160 0 42 31 1 0 20 chain 11620 chr12 133275309 + 55917479 55917621 L1PA16 3655 + 3421 3563 67537 142 chain 11890 chr12 133275309 + 56006147 56006292 MER4A1 472 + 1 151 67032 93 0 5 52 chain 21966 chr12 133275309 + 56090349 56090636 AluSc 308 + 0 273 53883 53 18 4 216 chain 6355 chr12 133275309 + 56190368 56190439 tRNA-Ser-TCG 80 + 5 76 79823 71 chain 28241 chr12 133275309 + 56266298 56266644 MLT2A2 560 + 190 548 44502 9 0 10 9 1 0 267 0 3 60 chain 21710 chr12 133275309 + 56292064 56292998 LTR10C 591 + 296 589 54219 39 304 0 65 7 1 85 0 2 29 319 0 16 14 0 56 chain 434954 chr12 133275309 + 56398526 56404751 HERVL-int 5654 + 302 5654 4666 331 0 1 100 0 2 116 3 0 14 0 5 1034 0 2 217 996 4 156 0 1 387 0 2 168 0 52 955 1 0 39 0 41 33 1 4 314 0 4 429 0 2 39 1 0 96 5 6 43 1 4 261 12 13 184 0 3 70 0 1 219 chain 29505 chr12 133275309 + 56404751 56405145 MLT2A1 477 + 0 400 42601 140 0 1 23 5 9 151 1 0 47 11 13 16 chain 23864 chr12 133275309 + 56437615 56438001 MER51D 577 + 50 451 51008 22 6 1 6 1 0 4 1 0 10 19 11 183 10 27 23 1 0 33 0 14 67 chain 87467 chr12 133275309 + 56496569 56497585 LTR13 1007 + 0 1007 20139 380 1 2 43 10 1 4 1 0 577 chain 8356 chr12 133275309 + 56588517 56588619 U6 107 + 0 105 74012 53 0 3 49 chain 27492 chr12 133275309 + 56625607 56625897 AluYg6 310 + 12 302 45591 290 chain 81250 chr12 133275309 + 56653405 56654480 MER11B 1079 + 0 1079 21377 47 0 3 175 0 5 121 6 9 67 2 1 313 10 0 26 0 2 51 5 6 41 0 1 16 4 5 161 1 0 29 chain 14358 chr12 133275309 + 56654811 56654989 MER1A 529 + 199 377 63100 178 chain 4130 chr12 133275309 + 56655014 56655061 MER1B 344 + 286 333 90577 47 chain 4200 chr12 133275309 + 56714215 56714295 L1PB1 5432 + 5353 5427 90120 20 1 0 18 6 5 8 2 0 18 2 0 5 chain 14456 chr12 133275309 + 56744516 56744732 Tigger3a 397 + 56 322 62958 14 23 72 94 0 1 85 chain 10373 chr12 133275309 + 56761087 56761214 L1MB7 1623 + 1052 1179 69666 127 chain 27461 chr12 133275309 + 56765891 56766308 LTR7Y 441 + 0 434 45622 160 65 81 82 0 1 110 chain 30435 chr12 133275309 + 56780231 56780575 LTR10C 591 + 0 344 41642 344 chain 115012 chr12 133275309 + 56798419 56799868 L1PA8 5853 + 4411 5853 16392 159 1 2 62 12 0 66 3 4 292 8 0 10 5 9 174 0 3 153 0 5 35 0 2 138 0 3 36 1 0 47 2 0 67 2 1 56 7 6 19 3 2 91 chain 90017 chr12 133275309 + 56822107 56823135 LTR5A 1029 + 0 1029 19678 147 1 0 542 0 2 338 chain 138179 chr12 133275309 + 56844872 56846473 L1PA6 6164 + 4544 6156 13253 652 0 7 115 0 4 78 1 0 4 0 1 751 chain 77206 chr12 133275309 + 56852741 56854139 MER11A 1151 + 0 1146 22264 108 0 2 33 0 93 56 13 9 139 322 9 89 0 1 141 5 7 36 0 1 107 50 33 20 18 0 36 0 1 225 chain 31839 chr12 133275309 + 56858930 56859368 MLT2A1 477 + 0 477 40464 86 9 15 67 9 6 211 3 35 47 0 4 6 chain 33883 chr12 133275309 + 56875653 56876096 MER4A1 472 + 0 471 38798 15 0 2 23 0 5 181 5 26 219 chain 121199 chr12 133275309 + 56878764 56880233 SVA_B 1603 + 44 1603 15316 20 5 10 572 40 0 50 1 41 88 0 3 36 0 84 21 2 0 634 chain 469512 chr12 133275309 + 56888361 56894055 L1PA5 6144 + 492 6143 3872 136 3 1 284 8 12 27 25 0 210 16 7 56 0 2 953 19 19 99 1 2 5 1 0 8 24 2 848 0 1 115 0 1 137 0 1 84 1 0 372 0 1 75 0 2 441 0 1 1178 0 2 427 0 1 141 chain 27465 chr12 133275309 + 56897463 56897833 L1PA8 5853 + 5483 5847 45618 81 1 0 46 2 0 69 2 1 60 2 1 16 5 4 86 chain 59839 chr12 133275309 + 56904759 56905855 L1PA8A 6298 + 5496 6289 26418 144 337 28 336 0 3 143 0 2 24 0 1 7 5 4 42 1 2 57 chain 77113 chr12 133275309 + 56909026 56910055 THE1C-int 1605 + 384 1587 22285 61 0 7 222 0 1 40 29 39 7 9 0 263 0 12 114 2 3 138 0 152 144 chain 100808 chr12 133275309 + 56918358 56919480 L1PA4 6152 + 4962 6084 18206 1122 chain 25100 chr12 133275309 + 56919551 56919894 L1PA8 5853 + 5517 5853 49117 47 1 0 44 2 0 69 3 2 9 9 8 44 2 1 19 1 0 93 chain 412957 chr12 133275309 + 56958262 56965991 L1P2 5180 + 14 5052 4990 136 1 0 44 1 0 53 4 3 265 1 0 268 22 20 93 0 4 38 0 1 235 4 5 63 1 0 212 0 1 871 9 0 203 0 3 606 0 5 88 1 0 459 2 0 399 0 1 161 0 2 255 0 1 43 2691 0 113 1 0 225 0 1 161 chain 147389 chr12 133275309 + 56962812 56965272 SVA_D 2077 + 0 2064 12520 817 40 0 99 1 38 49 0 51 44 0 303 328 0 10 126 766 9 190 chain 67229 chr12 133275309 + 56964316 56965052 L1HS 6032 + 5295 6031 24641 365 0 1 355 1 0 15 chain 524287 chr12 133275309 + 56966000 56974765 L1PA5 6144 + 3 6144 2078 1036 2311 0 132 10 0 235 0 4 388 0 1 515 0 1 430 0 1 1024 4 9 1492 2 1 120 0 3 27 0 1 33 318 0 688 chain 62700 chr12 133275309 + 56976734 56977882 L1PA8 5853 + 5033 5848 25711 439 327 0 84 11 10 44 2 0 67 4 3 8 1 0 38 0 1 13 2 1 19 1 0 88 chain 5276 chr12 133275309 + 57052931 57052995 MER5A1 166 + 96 160 84306 64 chain 117670 chr12 133275309 + 57274738 57276600 L1PB1 5432 + 3737 5279 15945 215 5 4 396 1 3 19 3 1 112 29 25 109 0 1 212 6 7 86 305 0 119 0 1 5 1 0 51 13 11 24 1 0 9 16 11 9 2 0 53 3 2 15 1 0 42 chain 24212 chr12 133275309 + 57286599 57286896 AluSp 311 + 0 293 50474 91 0 3 189 7 0 10 chain 5583 chr12 133275309 + 57328845 57328945 Tigger1 2417 + 2287 2392 82888 35 5 6 35 8 12 17 chain 5852 chr12 133275309 + 57363451 57363522 L1MA5A 2387 + 2230 2300 81686 66 1 0 4 chain 24034 chr12 133275309 + 57370359 57370664 AluSp 311 + 11 306 50749 37 9 0 8 2 1 249 chain 8191 chr12 133275309 + 57376981 57377078 LTR12C 1709 + 1290 1387 74433 97 chain 100191 chr12 133275309 + 57386129 57387490 LTR12C 1709 + 0 1707 18281 277 4 0 2 0 13 10 8 0 36 0 43 269 0 119 68 1 0 126 22 23 42 0 41 17 18 42 68 14 32 211 0 101 79 7 6 82 chain 50768 chr12 133275309 + 57400015 57400587 L1PA5 6144 + 5567 6138 29291 244 2 1 326 chain 4932 chr12 133275309 + 57401203 57401498 MLT1H 522 + 100 394 85985 43 40 42 20 169 166 23 chain 6133 chr12 133275309 + 57451954 57452062 MER96B 391 + 75 186 80597 11 4 8 13 2 0 7 1 2 70 chain 3174 chr12 133275309 + 57637646 57637771 MER2 342 + 58 215 98147 11 0 2 9 54 81 23 7 10 21 chain 34445 chr12 133275309 + 57640675 57641126 MER4A1 472 + 0 472 38403 24 2 1 205 4 25 77 1 0 10 0 2 128 chain 554454 chr12 133275309 + 57646479 57652498 L1PA2 6032 + 1 6031 448 156 0 11 5863 chain 187586 chr12 133275309 + 57652499 57655594 MER4-int 2692 + 86 2570 10234 13 2 0 7 15 19 414 0 9 166 17 12 32 1 0 81 0 1 5 305 0 78 0 1 151 0 5 106 7 10 281 1 6 27 5 0 270 1 0 370 330 1 62 27 34 35 1 2 214 0 1 71 chain 3393 chr12 133275309 + 57656265 57656307 LTR12C 1709 + 932 974 96151 42 chain 7480 chr12 133275309 + 57656352 57656558 LTR12C 1709 + 819 1065 76174 18 1 0 36 105 146 46 chain 148204 chr12 133275309 + 57662809 57666911 MER57-int 2662 + 526 2660 12471 127 0 1 25 0 7 184 0 8 115 0 1 109 0 4 239 1 0 20 0 2 231 0 1 2 0 15 292 3 0 62 0 2 84 20 22 5 3 0 95 1972 0 141 16 13 58 17 21 12 18 12 68 73 55 23 1 0 7 20 15 21 3 0 35 chain 142947 chr12 133275309 + 57664488 57666343 SVA_A 1864 + 18 1864 12867 507 13 16 72 3 0 114 2 0 38 5 7 27 4 1 39 3 0 33 4 1 13 1 0 5 6 6 127 2 0 33 4 1 39 11 11 35 1 0 24 7 5 101 45 54 537 chain 28333 chr12 133275309 + 57667324 57667697 MER4A1 472 + 73 472 44367 4 1 0 34 0 2 117 11 32 36 3 6 19 0 1 148 chain 5382 chr12 133275309 + 57685131 57685198 L1PB2 3958 + 2308 2375 83784 27 1 0 4 0 1 35 chain 9162 chr12 133275309 + 57686566 57686683 L1PB4 2604 + 708 823 72202 47 2 0 68 chain 29967 chr12 133275309 + 57855604 57856025 LTR7B 505 + 0 495 42087 108 0 10 57 0 38 12 0 25 5 2 1 22 1 3 23 0 1 58 1 0 23 0 1 54 14 13 41 chain 13152 chr12 133275309 + 57939634 57939873 L1PB4 2604 + 2332 2572 64848 14 12 16 15 14 11 23 1 2 139 6 5 15 chain 412417 chr12 133275309 + 57958452 57963908 L1PB1 5432 + 19 5420 4998 27 9 8 204 0 1 130 4 3 14 1 0 482 1 0 346 1 0 62 1 0 35 5 0 64 1 0 7 8 1 213 1 0 4 0 1 222 0 2 448 0 1 157 0 1 37 12 0 705 0 2 112 11 8 404 3 1 15 1 5 41 0 1 51 0 2 271 4 0 93 0 3 182 0 3 138 0 2 95 1 2 178 3 6 6 3 0 61 8 4 222 0 1 14 3 0 21 1 0 9 16 11 11 3 1 50 2 1 16 1 0 38 6 5 15 3 0 8 15 5 16 30 25 21 1 0 21 1 0 13 1 0 16 chain 8283 chr12 133275309 + 57965264 57965424 L1MA2 4263 + 3906 4105 74205 35 0 1 10 18 16 38 13 53 46 chain 70086 chr12 133275309 + 57970999 57971757 L1PA3long 6157 + 5399 6157 23976 758 chain 196560 chr12 133275309 + 57978262 57980721 L1PA7 6471 + 4115 6465 9825 126 9 5 240 107 3 582 11 0 141 0 1 330 1 0 77 1 4 645 9 14 173 0 2 7 chain 45006 chr12 133275309 + 57986261 57986839 L1PA8 5853 + 5281 5853 31581 281 1 0 46 3 1 73 1 0 58 2 1 19 1 0 93 chain 43858 chr12 133275309 + 58023380 58023882 L1PA5 6144 + 5641 6143 32214 502 chain 7752 chr12 133275309 + 58030460 58030569 MLT1E3 631 + 58 180 75486 93 4 17 12 chain 33210 chr12 133275309 + 58037662 58038075 L1PA5 6144 + 5731 6144 39337 258 1 8 9 7 0 138 chain 529566 chr12 133275309 + 58051823 58064017 L1PA5 6144 + 3 6143 1849 1827 6056 0 881 1 0 3188 0 1 52 0 1 28 1 6 5 4 0 151 chain 7008 chr12 133275309 + 58090681 58091559 MLT1B 390 + 16 373 77577 7 2 0 30 214 232 49 538 0 12 0 1 26 chain 25884 chr12 133275309 + 58165622 58165933 THE1D-int 1627 + 1264 1574 47892 163 1 0 147 chain 3589 chr12 133275309 + 58213848 58213892 MADE1 96 + 50 94 94520 44 chain 7392 chr12 133275309 + 58245194 58245285 LTR47A 437 + 347 437 76412 50 1 0 40 chain 102338 chr12 133275309 + 58276764 58278201 THE1B-int 1605 + 1 1491 18028 205 0 28 196 38 21 67 0 1 169 8 9 46 5 14 67 0 1 26 12 9 213 8 23 96 10 25 20 4 7 247 chain 22909 chr12 133275309 + 58337477 58337850 THE1C 375 + 0 375 52501 104 13 12 24 5 6 22 42 45 136 1 0 26 chain 464751 chr12 133275309 + 58426231 58431832 L1PA7 6471 + 666 6466 3999 417 2 0 127 0 4 387 0 1 58 0 1 393 0 2 12 0 1 102 1 0 126 3 0 344 14 10 44 0 1 193 5 9 177 0 1 290 0 22 308 0 1 36 2 1 97 1 2 444 0 2 74 0 4 119 0 1 341 0 4 802 3 165 319 0 10 82 12 2 118 1 0 109 1 0 37 chain 20199 chr12 133275309 + 58510968 58511269 THE1B 368 + 0 356 56139 39 0 47 86 1 0 26 35 45 75 1 0 38 chain 23290 chr12 133275309 + 58581059 58581349 AluSc5 308 + 19 307 51944 283 2 0 5 chain 9113 chr12 133275309 + 58594945 58595074 L1PA8 5853 + 5717 5853 72317 23 2 1 19 6 14 79 chain 34663 chr12 133275309 + 58604800 58605215 L1PA7 6471 + 6051 6465 38242 270 3 1 75 0 1 67 chain 23299 chr12 133275309 + 58666208 58666496 L1PA8 5853 + 5564 5847 51931 44 2 0 74 1 0 58 2 1 19 1 0 87 chain 72528 chr12 133275309 + 58694898 58695954 MER11A 1151 + 0 1151 23427 79 0 8 143 1 0 26 0 1 37 0 11 227 0 12 127 17 20 11 3 4 29 8 12 47 16 42 4 0 1 18 2 34 92 14 13 86 8 7 21 1 0 39 chain 2386 chr12 133275309 + 58695964 58696016 L1PA15 4387 + 4087 4137 104215 12 11 10 22 1 0 6 chain 137138 chr12 133275309 + 58701336 58703076 L1P2 5180 + 2 1758 13326 148 2 1 44 6 5 47 14 13 127 18 22 36 1 2 14 1 0 54 1 0 242 1 0 30 0 15 246 0 1 23 0 1 685 chain 13063 chr12 133275309 + 58730165 58730343 L1PB4 2604 + 2390 2570 64999 24 0 3 135 1 0 18 chain 6832 chr12 133275309 + 58743478 58743562 L1MA10 1535 + 11 95 78196 84 chain 56290 chr12 133275309 + 58782564 58783855 L1PB 1623 + 729 1452 27486 58 1 0 89 565 0 60 5 7 7 2 0 355 1 0 141 1 0 6 chain 44925 chr12 133275309 + 58782716 58783252 MLT2A2 560 + 0 536 31620 536 chain 7567 chr12 133275309 + 58787390 58787486 Tigger4 2445 + 240 336 75941 96 chain 23173 chr12 133275309 + 58815639 58815947 AluSp 311 + 8 299 52114 116 16 4 17 5 0 154 chain 9694 chr12 133275309 + 58963677 58963861 MER31A 484 + 150 350 71064 61 0 4 17 40 55 5 3 0 58 chain 6539 chr12 133275309 + 58975235 58975319 ORSL-2b 485 + 130 214 79203 84 chain 20319 chr12 133275309 + 58981470 58981750 L1PA8A 6298 + 6010 6290 55989 82 11 19 33 9 0 39 0 1 106 chain 45884 chr12 133275309 + 58987069 58987811 L1PA15 4387 + 3590 4327 31111 6 4 0 49 0 1 62 6 9 96 2 0 16 3 0 62 14 12 29 1 0 27 1 0 9 0 10 126 1 0 26 1 0 54 2 1 22 4 0 10 1 0 35 24 21 12 0 7 24 2 0 11 chain 21200 chr12 133275309 + 58988294 58988653 THE1B 368 + 8 368 54883 39 73 74 51 3 2 122 0 1 71 chain 29978 chr12 133275309 + 59101643 59102075 LTR7 482 + 0 482 42077 138 38 45 28 8 50 44 0 1 176 chain 295206 chr12 133275309 + 59102077 59105865 HERVH-int 3825 + 0 3824 6977 532 188 0 38 2 1 9 1 0 8 1 0 16 28 0 15 1 0 12 21 18 7 1 0 42 3 2 54 1 2 8 0 2 12 0 3 580 1 0 20 0 1 301 7 33 25 0 1 273 0 10 271 2 1 352 0 1 420 9 11 39 0 210 23 13 14 231 0 2 129 0 3 92 chain 5387 chr12 133275309 + 59102609 59102669 HERVH-int 3825 + 471 531 80055 60 chain 5379 chr12 133275309 + 59102669 59102731 HERVH-int 3825 + 470 532 80489 62 chain 1955 chr12 133275309 + 59102873 59102900 HERVH-int 3825 + 656 683 91059 27 chain 82020 chr12 133275309 + 59108213 59109184 LTR5_Hs 974 + 0 974 21236 411 7 0 74 0 1 19 0 1 221 3 0 97 0 7 39 2 0 21 0 6 77 chain 11513 chr12 133275309 + 59117988 59118126 Tigger3a 397 + 142 280 67726 138 chain 156714 chr12 133275309 + 59146005 59147743 L1PA3long 6157 + 4405 6144 11957 29 0 1 865 1 0 714 0 1 129 chain 32423 chr12 133275309 + 59190347 59190810 L1PA8 5853 + 5390 5853 40019 174 1 0 46 2 0 23 0 7 35 5 4 12 10 9 39 17 16 5 1 0 30 1 0 8 0 1 54 chain 40523 chr12 133275309 + 59200906 59201375 L1PA5 6144 + 5673 6142 34295 469 chain 343610 chr12 133275309 + 59243222 59248813 L1PA8A 6298 + 1582 6289 6000 108 4 8 249 0 1 257 2 3 301 0 1 54 8 0 12 0 1 55 2 0 9 0 2 70 36 52 5 0 2 77 3 4 4 1 0 108 0 4 454 1 13 13 0 1 4 0 2 11 1 3 11 1 4 29 0 2 253 0 1 105 1 2 40 0 3 205 5 6 32 753 8 62 0 1 5 1 0 515 0 1 63 0 1 6 0 4 61 0 3 532 0 8 53 1 0 32 225 0 9 4 0 24 11 8 345 0 1 41 7 8 6 0 1 62 8 9 96 0 1 25 5 8 30 0 16 39 2 5 37 chain 21171 chr12 133275309 + 59259051 59259555 L1PB1 5432 + 4861 5392 54922 98 15 12 58 103 153 38 2 1 16 1 0 42 2 1 16 27 16 14 3 1 5 1 0 14 2 0 24 1 0 22 chain 440465 chr12 133275309 + 59268233 59274064 L1PA8 5853 + 50 5850 4569 21 4 2 9 1 0 13 52 13 98 12 19 75 24 28 232 10 0 8 17 27 47 0 1 162 0 12 242 25 29 103 1 0 4 1 2 37 5 6 162 0 1 345 0 6 263 17 0 369 0 2 65 6 5 213 4 0 188 11 13 341 8 0 1157 1 0 457 1 2 181 2 0 475 0 9 70 2 1 45 2 0 69 1 0 9 1 0 11 0 1 40 2 1 19 1 0 90 chain 54796 chr12 133275309 + 59295355 59296039 LTR12_ 688 + 0 687 27950 25 1 0 40 7 5 215 5 4 319 0 7 72 chain 135134 chr12 133275309 + 59301602 59303314 L1P1 4361 + 2202 3911 13530 103 16 11 14 6 0 55 6 7 177 0 3 373 5 6 185 0 5 18 1 0 18 1 0 734 chain 33538 chr12 133275309 + 59387622 59388063 LTR2 463 + 0 463 39051 155 15 36 171 12 13 88 chain 439844 chr12 133275309 + 59389819 59396129 L1PA8A 6298 + 50 6290 4579 6 1 0 12 8 3 6 6 0 23 3 0 19 56 46 5 1 0 19 2 0 15 2 0 4 1 0 12 12 10 7 1 0 5 1 0 9 14 9 6 2 0 27 13 12 22 3 1 6 6 0 18 14 15 37 2 0 13 6 5 11 4 2 48 1 2 21 7 6 72 3 2 48 5 6 165 5 1 54 7 5 267 7 11 473 7 6 22 0 1 572 0 1 170 0 2 116 1 2 62 13 0 395 0 4 62 1 0 49 0 1 11 0 1 2 40 0 277 1 0 33 1 0 143 0 1 77 39 39 25 0 1 78 3 2 82 7 9 9 0 1 91 0 1 76 4 8 49 7 8 720 3 0 10 16 27 206 36 37 4 1 0 16 1 0 86 0 9 126 0 2 58 0 1 81 0 3 77 0 2 55 0 2 102 0 3 19 7 0 438 3 4 97 chain 70269 chr12 133275309 + 59439767 59440841 MER11A 1151 + 0 1145 23934 46 9 108 22 8 0 54 0 4 60 4 0 149 0 1 91 12 13 135 6 7 120 0 26 26 43 0 24 22 5 19 10 11 34 7 6 22 0 1 140 0 10 11 chain 165840 chr12 133275309 + 59467125 59468955 L1PA2 6032 + 4197 6031 11344 28 0 4 1802 chain 44286 chr12 133275309 + 59470932 59471478 LTR12 884 + 0 869 31961 55 0 41 103 0 179 247 1 104 140 chain 218178 chr12 133275309 + 59471521 59474278 HERV9-int 5642 + 0 2841 9087 229 1 4 7 3 0 359 25 13 101 0 4 71 4 3 123 0 85 19 1 0 81 9 7 65 0 1 212 0 1 193 5 4 256 3 5 270 2 1 4 0 1 56 0 1 306 0 6 202 0 1 150 chain 61372 chr12 133275309 + 59475364 59476177 LTR12 884 + 0 844 26016 89 26 1 243 1 27 14 4 26 163 7 15 266 chain 65149 chr12 133275309 + 59480490 59481230 L1PA4 6152 + 3542 4328 25149 592 0 46 148 chain 20950 chr12 133275309 + 59509580 59509862 L1MA3 4352 + 3538 3821 55191 73 6 8 94 1 0 108 chain 40431 chr12 133275309 + 59590049 59590484 L1PA2 6032 + 5375 5810 34362 435 chain 71855 chr12 133275309 + 59740476 59741267 L1PA3long 6157 + 3910 4701 23578 791 chain 97725 chr12 133275309 + 59749956 59751104 L1PA7 6471 + 5201 6353 18558 413 0 3 81 0 2 431 1 0 222 chain 551258 chr12 133275309 + 59751112 59757266 L1PA3long 6157 + 4 6157 656 11 12 5 234 0 1 324 1 0 468 0 2 2948 0 3 408 1 0 705 0 1 366 0 1 676 chain 10063 chr12 133275309 + 59757283 59757409 L1PA7 6471 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20 1 0 21 1 0 13 1 0 16 chain 440629 chr12 133275309 + 59947857 59954295 L1PA3long 6157 + 1208 6157 4568 1160 0 1 66 0 3 731 2 0 45 0 1 395 1497 0 334 0 1 1359 0 4 849 chain 129677 chr12 133275309 + 59950278 59951740 L1PA3long 6157 + 4694 6157 14076 231 0 1 892 1 0 210 1 2 127 chain 53444 chr12 133275309 + 59954881 59955460 L1PA2 6032 + 5448 6027 28413 579 chain 118820 chr12 133275309 + 59957733 59959238 L1PA7 6471 + 4967 6470 15741 364 9 2 146 2 4 141 1 0 62 12 14 96 0 2 212 2 1 315 1 2 142 chain 201677 chr12 133275309 + 59983127 59986312 L1PA11 4918 + 1565 4507 9654 107 29 28 112 1 2 10 5 12 14 314 0 162 0 1 32 1 0 150 13 13 19 6 5 9 0 2 40 0 4 433 0 5 74 1 0 319 0 1 246 0 2 162 0 4 61 5 56 12 3 0 34 9 8 25 0 1 193 5 6 35 9 8 20 1 0 52 1 0 276 8 6 51 58 65 32 2 0 10 5 4 19 chain 32084 chr12 133275309 + 60009851 60010208 L1P1 4361 + 3268 3625 40285 357 chain 68506 chr12 133275309 + 60018298 60019045 L1PA3long 6157 + 3709 4456 24333 747 chain 24075 chr12 133275309 + 60057727 60058021 THE1C-int 1605 + 33 328 50694 260 0 1 34 chain 15956 chr12 133275309 + 60125075 60125430 THE1B 368 + 0 368 61081 47 1 2 28 66 69 26 3 2 24 45 55 115 chain 18190 chr12 133275309 + 60129996 60130186 AluYa5 310 + 119 309 58471 190 chain 24178 chr12 133275309 + 60178732 60178996 L1HS 6032 + 5765 6028 50524 253 1 0 10 chain 23048 chr12 133275309 + 60213432 60213811 THE1C 375 + 0 375 52296 104 31 35 6 4 0 34 23 20 153 1 0 23 chain 497594 chr12 133275309 + 60234374 60240761 L1PA7 6471 + 1 6470 3218 4 1 0 700 10 12 127 15 14 55 0 15 61 1 2 8 4 5 233 0 6 154 8 12 233 8 9 11 0 1 214 8 9 187 0 1 39 0 1 517 2 3 185 0 1 26 0 3 673 1 2 16 7 18 70 0 1 183 1 5 492 1 0 83 7 8 269 0 8 141 0 1 136 1 2 648 0 1 17 0 4 91 0 7 156 17 26 103 8 1 29 0 1 95 0 1 121 18 18 31 0 1 127 0 1 34 chain 3212 chr12 133275309 + 60270262 60270303 LTR12E 1234 + 781 822 97784 41 chain 2915 chr12 133275309 + 60295828 60295861 MER50-int 1626 + 1319 1352 100719 33 chain 78797 chr12 133275309 + 60379213 60380287 L1PA10 4194 + 3084 4161 21919 244 1 2 43 0 1 70 0 2 493 1 2 17 13 14 137 1 0 4 7 6 31 1 0 11 chain 72208 chr12 133275309 + 60434044 60434894 L1PA5 6144 + 5271 6123 23481 682 2 3 36 4 5 126 chain 182524 chr12 133275309 + 60441075 60444145 L1PB1 5432 + 960 5410 10469 45 17 8 156 1 0 181 0 1 15 76 54 66 0 1 29 13 1606 39 8 12 188 0 1 50 17 19 250 1 0 41 2 5 156 0 1 27 0 1 44 1 0 81 4 9 6 5 0 118 18 17 440 0 3 37 10 0 45 12 13 252 1 0 5 0 1 47 290 128 11 2 0 51 2 1 16 1 0 32 0 1 11 1 0 15 51 36 14 2 0 24 1 0 21 1 0 13 1 0 6 chain 72032 chr12 133275309 + 60496755 60497612 L1PA5 6144 + 4991 5862 23529 280 1 5 10 3 0 5 1 7 10 3 0 437 0 4 71 0 3 30 0 3 6 chain 27028 chr12 133275309 + 60505595 60505887 L1PA3long 6157 + 5359 5651 46230 292 chain 45283 chr12 133275309 + 60577602 60578189 LTR22 571 + 0 571 31430 193 4 5 107 0 1 57 18 0 208 chain 207060 chr12 133275309 + 60585659 60588185 L1PA7 6471 + 3918 6463 9461 5 0 3 576 4 3 134 1 0 542 0 1 4 1 0 436 0 7 81 2 0 316 0 2 128 0 11 46 1 0 6 0 1 243 chain 324059 chr12 133275309 + 60620094 60624400 L1PA7 6471 + 626 6468 6336 99 10 19 139 0 2 42 18 18 180 9 0 7 8 17 66 0 4 6 0 1 85 1 12 25 18 19 402 1 5 338 0 1 152 1 0 254 0 2 111 11 12 210 0 1 24 7 11 205 0 4 9 5 5 362 0 1 28 1 5 19 0 1 5 1 0 15 13 17 45 0 1 201 5 1 184 1 0 10 1 5 62 10 12 23 8 1487 24 1 0 75 7 9 329 0 1 29 0 1 247 11 10 146 chain 37037 chr12 133275309 + 60636977 60637442 HERVL-int 5654 + 0 464 36716 441 4 3 20 chain 33256 chr12 133275309 + 60685023 60685434 LTR3 431 + 6 419 39299 42 0 1 199 5 6 165 chain 229908 chr12 133275309 + 60726550 60729170 L1PA4 6152 + 3331 5969 8750 1298 0 1 143 0 1 245 0 9 269 1 5 224 0 2 283 1 2 156 chain 35608 chr12 133275309 + 60737109 60737530 L1PA5 6144 + 5725 6144 37654 166 1 0 241 2 1 11 chain 432200 chr12 133275309 + 60745763 60751618 L1PA8 5853 + 50 5839 4717 22 2 0 10 1 0 6 65 26 191 0 4 566 10 13 966 20 19 26 3 2 59 1 5 54 41 8 784 0 2 23 1 6 45 22 23 4 0 1 19 0 4 65 2 1 93 6 5 281 11 6 305 1 0 365 0 4 125 0 2 25 3 2 87 7 8 22 1 0 173 7 2 195 4 5 290 3 0 10 3 5 39 0 1 30 0 2 478 1 0 44 11 9 61 2 1 13 1 0 52 19 16 79 chain 11341 chr12 133275309 + 60753470 60754035 L1MA6 2487 + 2098 2484 68018 45 0 1 53 1 0 22 195 129 30 3 0 17 170 61 4 1 0 24 chain 36961 chr12 133275309 + 60771751 60772240 L1PA7 6471 + 5982 6465 36764 315 18 17 34 12 11 99 4 0 7 chain 51567 chr12 133275309 + 60778307 60778880 L1PA3long 6157 + 3926 4500 29008 385 0 1 188 chain 42298 chr12 133275309 + 60791347 60791833 L1PA2 6032 + 5551 6029 33189 470 8 0 8 chain 58232 chr12 133275309 + 60897351 60897993 L1PA3long 6157 + 4595 5237 26889 642 chain 5043 chr12 133275309 + 60922171 60922246 L1P1 4361 + 2296 2372 85452 11 0 2 5 2 1 57 chain 7570 chr12 133275309 + 61024154 61024436 LTR12D 1347 + 1023 1170 75931 25 1 0 4 103 0 30 1 0 16 34 1 12 14 17 42 chain 62929 chr12 133275309 + 61055267 61055963 L1P1 4361 + 3607 4305 25649 543 1 0 105 0 3 47 chain 119395 chr12 133275309 + 61061663 61063069 L1P1 4361 + 680 2079 15629 12 7 0 1387 chain 305000 chr12 133275309 + 61076393 61079881 L1PA4 6152 + 3 5879 6723 259 0 2379 245 0 3 1462 0 4 182 0 2 1340 chain 158910 chr12 133275309 + 61121755 61123951 HERVL-int 5654 + 3430 5641 11815 33 8 9 448 7 8 98 13 0 16 0 21 44 3 4 688 0 1 159 0 1 89 0 1 22 6 7 90 0 1 47 13 13 202 0 3 5 7 0 25 66 69 107 chain 7125 chr12 133275309 + 61133162 61133255 MER4A1_ 611 + 0 93 77178 8 1 0 4 0 1 80 chain 40003 chr12 133275309 + 61148402 61148852 L1PA5 6144 + 5689 6138 34654 346 1 0 103 chain 15040 chr12 133275309 + 61158415 61158837 L1PA14 3548 + 3064 3465 62213 43 15 11 13 2 0 6 1 0 36 0 2 46 1 0 4 124 119 35 4 2 12 11 9 12 1 0 41 5 0 10 chain 175093 chr12 133275309 + 61278452 61280613 L1PA7 6471 + 4312 6469 10827 15 0 1 158 1 2 531 1 0 210 0 1 170 0 1 99 16 0 39 5 4 78 1 0 81 0 9 280 0 2 106 1 0 214 0 1 155 chain 544045 chr12 133275309 + 61293783 61299906 L1PA3long 6157 + 10 6149 1079 946 0 4 98 0 1 131 0 3 11 1 0 4 1 2 350 0 1 1139 0 5 466 1 0 349 1 0 314 0 1 35 1 0 878 0 3 1258 0 1 139 chain 526788 chr12 133275309 + 61316746 61322871 L1PA5 6144 + 7 6140 1964 1266 0 1 89 1 11 298 0 1 349 0 1 77 10 9 1048 0 1 179 0 2 645 0 3 1310 0 4 169 0 2 338 0 1 142 23 6 13 1 0 5 5 6 157 chain 24519 chr12 133275309 + 61342758 61343026 AluYb8 318 + 48 310 49999 78 6 0 184 chain 46967 chr12 133275309 + 61359612 61360556 LTR12_ 688 + 0 629 30670 14 0 1 75 26 1 54 0 24 309 315 0 151 chain 69872 chr12 133275309 + 61401708 61402477 L1PA3long 6157 + 5380 6149 24024 769 chain 2533 chr12 133275309 + 61405487 61405637 L1ME1 1623 + 1372 1521 103474 4 1 0 28 1 0 4 95 96 17 chain 43812 chr12 133275309 + 61453662 61454223 THE1B-int 1605 + 1024 1597 32243 37 0 9 415 0 2 52 4 5 53 chain 24385 chr12 133275309 + 61458730 61459006 L1PA5 6144 + 5374 5650 50184 276 chain 43202 chr12 133275309 + 61459006 61459496 L1PA5 6144 + 5651 6141 32645 490 chain 124058 chr12 133275309 + 61474072 61475452 L1PA3long 6157 + 1904 3289 14836 104 0 1 235 1 2 457 0 3 51 0 1 4 1 0 527 chain 71319 chr12 133275309 + 61541122 61541886 L1PA2 6032 + 3692 4456 23690 764 chain 79101 chr12 133275309 + 61589796 61590902 HERVH-int 3825 + 2882 3825 21840 91 165 0 42 1 0 71 0 3 736 chain 67748 chr12 133275309 + 61593632 61594481 L1PA7 6471 + 5626 6456 24507 658 0 6 6 41 16 144 chain 20039 chr12 133275309 + 61672191 61672411 L1PA3long 6157 + 5086 5306 56329 220 chain 77697 chr12 133275309 + 61672411 61673261 L1PA3long 6157 + 5307 6157 22162 850 chain 22625 chr12 133275309 + 61688946 61689260 L1PA10 4194 + 3847 4161 52950 102 0 7 154 12 6 34 1 0 11 chain 19298 chr12 133275309 + 61699503 61699920 MER61D 487 + 37 487 57239 30 13 46 140 27 29 13 11 7 12 23 28 44 51 49 37 1 0 15 chain 26831 chr12 133275309 + 61734226 61734524 L1PA3long 6157 + 5859 6157 46499 298 chain 19669 chr12 133275309 + 61740204 61740489 L1PA7 6471 + 6181 6470 56830 18 0 4 19 1 0 58 5 1 29 13 0 10 0 14 77 0 1 42 1 4 12 chain 89477 chr12 133275309 + 61746883 61747876 L1PA3long 6157 + 5162 6157 19763 238 0 3 737 1 0 17 chain 22826 chr12 133275309 + 61789425 61789698 L1PA7 6471 + 6194 6467 52621 273 chain 68743 chr12 133275309 + 61794715 61795474 L1PA5 6144 + 5119 5878 24274 759 chain 124144 chr12 133275309 + 61806503 61808078 THE1B-int 1605 + 1 1600 14822 78 14 15 336 1 26 1113 10 8 23 chain 24339 chr12 133275309 + 61864519 61864794 AluY 311 + 28 304 50264 104 0 1 171 chain 31525 chr12 133275309 + 61887926 61888263 L1PA2 6032 + 5215 5552 40720 337 chain 512494 chr12 133275309 + 61922306 61929170 L1PA7 6471 + 3 6470 2645 160 7 9 53 15 0 17 18 35 134 0 1 99 0 1 147 1 2 33 20 21 167 1 7 352 0 4 352 0 3 159 6 4 752 4 6 117 5 6 4 0 1 160 3 4 478 29 9 55 95 0 51 0 1 347 0 7 245 1 0 36 7 6 345 317 0 251 0 1 141 0 2 163 1 2 486 1 2 172 14 8 237 0 1 278 10 17 305 2 0 11 chain 54023 chr12 133275309 + 61929552 61930160 L1PA4 6152 + 5538 6152 28219 593 0 6 15 chain 19672 chr12 133275309 + 61938499 61938823 L1PB3 3668 + 3282 3583 56822 72 0 4 30 4 3 87 22 4 13 1 0 8 1 0 25 3 1 37 7 3 14 chain 557848 chr12 133275309 + 61941440 61947465 L1PA2 6032 + 1 6025 254 5416 0 1 601 2 0 6 chain 28127 chr12 133275309 + 61963642 61963975 L1PA7 6471 + 4873 5205 44671 323 1 0 9 chain 27244 chr12 133275309 + 61963975 61964285 L1PA7 6471 + 5210 5520 45905 310 chain 11747 chr12 133275309 + 61971359 61971489 L1PA4 6152 + 6013 6143 67313 130 chain 28216 chr12 133275309 + 61971501 61971871 L1PA6 6164 + 5782 6153 44543 189 33 34 148 chain 192748 chr12 133275309 + 61980130 61982446 L1PA6 6164 + 3829 6162 9981 162 9 5 185 0 1 618 14 14 76 2 0 47 0 1 193 3 2 4 0 1 176 0 1 209 2 21 356 0 1 260 chain 127738 chr12 133275309 + 62010195 62011764 SVA_A 1864 + 27 1864 14319 98 10 23 313 1 119 36 4 2 48 1 4 125 10 8 37 2 110 37 2 0 37 2 0 95 0 36 53 2 0 656 chain 62839 chr12 133275309 + 62018464 62019206 L1PA4 6152 + 4791 5522 25671 38 19 8 685 chain 6866 chr12 133275309 + 62025170 62025310 L1PA16 3655 + 3506 3619 78081 72 3 0 11 26 7 7 5 0 16 chain 33608 chr12 133275309 + 62031094 62031570 MLT2A1 477 + 0 477 38993 157 18 15 32 0 1 89 1 0 91 4 0 12 30 38 42 chain 40973 chr12 133275309 + 62043167 62043623 L1PA4 6152 + 5695 6151 33990 456 chain 2931 chr12 133275309 + 62116485 62116519 Helitron3Na_Mam 445 + 395 429 100578 34 chain 17194 chr12 133275309 + 62147760 62148060 L1PA17 2846 + 2406 2693 59578 95 4 0 16 1 0 4 12 11 46 17 13 9 1 0 32 1 0 18 9 8 35 chain 147659 chr12 133275309 + 62154888 62159851 L1PB1 5432 + 3405 5424 12506 7 0 1 87 0 1 225 13 12 191 0 3 149 0 1 68 0 1 475 3 0 476 2 3 9 10 0 20 1 0 13 16 11 9 2 0 53 2 1 16 1 0 3 2907 0 41 1 0 15 1 0 4 18 8 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 4183 chr12 133275309 + 62156758 62156854 L1PB1 5432 + 5311 5400 90241 16 8 5 14 7 5 19 1 0 21 1 0 9 chain 16611 chr12 133275309 + 62161212 62161514 L1PB4 2604 + 2244 2552 60256 35 21 23 11 0 1 58 8 6 33 8 9 54 14 18 60 chain 3011 chr12 133275309 + 62182517 62182552 MER5A1 166 + 47 82 99737 35 chain 23089 chr12 133275309 + 62214194 62214527 THE1B 368 + 2 368 52228 42 10 39 85 1 0 24 4 0 50 0 1 58 2 0 8 0 10 49 chain 6156 chr12 133275309 + 62224121 62224248 L1MB3 1562 + 1238 1364 80513 78 36 35 13 chain 294334 chr12 133275309 + 62418607 62422525 L1PB1 5432 + 1405 5417 7000 145 0 1 123 1 3 25 17 0 14 0 15 80 1 0 84 1 0 318 26 134 147 9 1 347 1 0 12 8 11 26 0 3 125 1 0 78 0 1 95 0 1 538 1 0 603 0 5 151 2 1 134 3 0 79 0 2 87 0 8 50 21 17 234 2 3 8 1 0 24 1 0 9 1 0 9 7 3 10 2 0 47 9 8 12 1 0 44 1 0 16 25 12 19 8 5 14 13 25 19 4 3 11 1 0 13 chain 2871 chr12 133275309 + 62429558 62429590 L1M3 994 + 171 203 101065 32 chain 76694 chr12 133275309 + 62462934 62463945 MER11A 1151 + 0 1151 22397 61 0 1 14 0 8 24 0 91 87 0 1 7 4 0 94 0 1 54 0 1 94 0 1 4 17 16 125 0 1 60 0 4 54 1 0 15 7 41 215 0 2 23 3 4 48 chain 12599 chr12 133275309 + 62488862 62489008 L1PA7 6471 + 6322 6468 65797 146 chain 50446 chr12 133275309 + 62496766 62497316 L1PA3long 6157 + 5606 6149 29400 396 7 0 147 chain 21651 chr12 133275309 + 62582381 62582710 HSMAR2 1300 + 910 1242 54290 130 0 11 9 41 32 59 0 1 90 chain 4432 chr12 133275309 + 62695671 62695724 MER5B 177 - 124 177 88713 53 chain 31191 chr12 133275309 + 62758770 62759189 LTR7B 505 + 0 492 40981 108 0 10 57 0 38 12 3 27 28 0 2 83 1 0 21 0 1 54 14 13 38 chain 514582 chr12 133275309 + 62819806 62825890 L1PA6 6164 + 0 6162 2541 17 0 1 4 1 0 42 1 2 129 0 1 107 0 22 138 3 2 112 0 1 18 1 8 208 0 1 689 0 1 70 2 1 116 1 0 169 0 12 270 0 6 193 0 1 241 0 4 145 1 10 662 0 1 281 4 0 440 1 0 1108 0 1 56 0 5 23 0 8 78 1 0 78 0 3 69 0 3 605 chain 19838 chr12 133275309 + 62870748 62871352 L1MB7 1623 + 1061 1601 56622 32 0 1 24 2 1 5 0 1 62 20 10 4 0 1 7 3 0 14 4 0 23 12 2 17 2 0 3 2 0 17 41 38 14 8 6 32 1 0 24 46 42 10 4 1 27 1 0 11 10 9 20 3 0 5 52 36 37 1 0 4 chain 37733 chr12 133275309 + 62879309 62879763 L1PA6 6164 + 5702 6156 36252 454 chain 5004 chr12 133275309 + 62881288 62881348 MLT1E3 631 + 86 146 85644 60 chain 5366 chr12 133275309 + 62889601 62889669 L1MC 810 + 693 760 83868 37 1 0 30 chain 93956 chr12 133275309 + 62896191 62897258 L1PA5 6144 + 5075 6142 19044 1067 chain 8572 chr12 133275309 + 62935700 62935799 HY3 101 + 0 99 73512 99 chain 35580 chr12 133275309 + 62966407 62966909 LTR10F 562 + 0 562 37670 170 14 66 14 0 2 5 3 8 13 14 13 258 0 2 11 chain 11309 chr12 133275309 + 63008962 63009127 MER34C_ 573 + 410 573 68073 26 1 0 55 2 4 24 4 1 53 chain 96309 chr12 133275309 + 63140039 63141112 L1PA4 6152 + 5069 6143 18735 284 0 1 789 chain 30981 chr12 133275309 + 63154764 63155173 MER4A 717 + 303 717 41143 92 3 5 32 0 4 232 1 0 49 chain 39030 chr12 133275309 + 63175439 63175948 THE1C-int 1605 + 0 515 35333 12 4 3 28 2 1 114 0 1 281 9 16 59 chain 108358 chr12 133275309 + 63178806 63180350 THE1B-int 1605 + 0 1605 17270 13 1 3 159 0 1 4 5 37 215 10 35 124 0 3 196 11 112 13 101 0 158 3 2 100 2 1 417 1 0 6 0 1 5 chain 221355 chr12 133275309 + 63189624 63192105 L1PA4 6152 + 3657 6138 8996 248 1 0 2089 0 1 143 chain 438610 chr12 133275309 + 63196230 63202353 L1PA6 6164 + 3 6152 4596 59 3 11 96 12 5 11 23 25 105 297 101 33 19 0 55 34 24 18 48 264 172 7 6 226 0 13 283 45 44 771 0 1 863 0 1 239 2 0 6 0 13 95 1 2 80 16 17 63 0 1 145 3 1 328 9 10 167 6 10 206 11 12 56 3 2 1188 1 2 177 0 1 141 chain 31054 chr12 133275309 + 63202369 63202752 L1PA7 6471 + 6086 6470 41089 222 7 8 154 chain 24751 chr12 133275309 + 63230790 63231153 L1PA15 4387 + 3960 4314 49659 24 0 1 28 2 1 90 1 0 27 1 0 54 1 0 22 2 0 10 1 0 50 4 1 46 chain 481822 chr12 133275309 + 63240421 63245903 L1PA4 6152 + 21 5519 3590 106 0 14 1743 0 2 1630 1 0 1798 1 2 203 chain 11117 chr12 133275309 + 63262075 63262241 MER30 238 + 36 230 68381 63 0 26 14 2 0 23 6 7 27 0 3 31 chain 82245 chr12 133275309 + 63270130 63271066 L1PA5 6144 + 4115 5064 21192 68 1 12 248 1 2 110 0 1 508 chain 460648 chr12 133275309 + 63330583 63336719 L1PA8A 6298 + 179 6291 4111 8 2 0 17 7 4 13 128 109 78 2 0 13 1 0 11 1 0 5 1 0 78 1 0 98 0 9 8 10 1 14 11 12 462 0 3 16 8 6 223 6 7 456 1 28 355 0 1 109 0 1 31 1 0 121 0 1 615 0 1 178 11 12 130 0 4 15 1 3 263 4 0 102 0 1 69 0 3 28 18 29 258 0 1 491 0 3 5 2 0 353 53 0 101 16 6 24 0 1 121 0 1 87 0 1 34 0 1 62 7 11 32 0 4 58 0 3 37 0 2 5 1 2 89 12 8 104 11 11 66 0 2 113 2 1 4 0 1 258 chain 4494 chr12 133275309 + 63335426 63335475 L1PA8A 6298 - 3684 3733 84989 49 chain 501547 chr12 133275309 + 63336890 63343011 L1PA6 6164 + 0 6161 3075 449 24 16 102 1 0 21 0 1 172 17 56 249 6 7 182 5 0 2 0 5 1063 4 0 735 3 4 22 1 2 97 2 0 4 0 1 505 3 1 468 4 0 11 0 4 33 0 1 159 0 2 416 24 26 105 0 4 396 0 3 50 0 1 117 0 4 47 0 1 608 5 0 9 chain 18834 chr12 133275309 + 63354517 63354734 L1PA5 6144 + 5921 6137 57732 74 1 0 142 chain 377313 chr12 133275309 + 63377801 63382830 L1PA7 6471 + 5 6469 5527 47 0 11 116 4 4 52 44 52 116 3 0 9 5 0 61 1 0 16 4 387 334 0 4 38 23 58 61 1 2 144 12 77 390 0 6 72 2 1 285 153 0 270 2 805 61 1 2 48 5 4 297 4 5 165 3 0 4 0 1 118 0 1 426 11 286 462 2 0 28 0 15 9 15 0 266 0 3 229 0 2 111 0 2 168 0 2 331 chain 28930 chr12 133275309 + 63389748 63390191 MER51B 395 + 0 384 43435 148 60 0 81 6 7 148 chain 45993 chr12 133275309 + 63419098 63419690 LTR10F 562 + 0 562 31064 140 28 0 91 12 9 286 0 1 35 chain 1726 chr12 133275309 + 63419238 63419266 LTR10F 562 + 168 196 75303 28 chain 26408 chr12 133275309 + 63427214 63427572 THE1A 353 + 0 353 47110 109 2 1 81 11 7 155 chain 372518 chr12 133275309 + 63434166 63438436 L1PA4 6152 + 9 6139 5609 572 0 3 5 3 0 94 0 3 596 0 1 918 0 2 61 0 1 58 0 1854 831 1 0 1131 chain 253645 chr12 133275309 + 63459786 63463686 L1PB1 5432 + 59 5424 8144 78 0 1 248 7 11 67 0 1 152 2 1 9 369 60 69 1 0 638 1 0 8 2 0 6 17 12 140 1 2 75 10 3 365 10 1847 314 1 5 257 0 2 61 0 2 5 2 0 78 0 1 44 3 0 183 4 12 14 45 5 179 1 6 26 0 1 5 1 0 51 1 2 8 4 1 24 0 3 6 17 12 10 3 1 50 2 1 16 1 0 43 1 0 16 1 0 4 2 0 13 8 0 14 9 6 13 3 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 33846 chr12 133275309 + 63484652 63485106 L1PA8 5853 + 5409 5853 38813 79 2 0 4 3 0 72 1 0 44 2 0 71 1 0 7 6 7 15 1 0 32 2 1 19 1 0 10 0 1 82 chain 22447 chr12 133275309 + 63496769 63497161 L1PA15 4387 + 3922 4304 53205 10 1 0 91 27 28 49 5 4 27 1 0 39 0 1 13 2 1 22 4 0 11 1 0 42 13 10 34 chain 18792 chr12 133275309 + 63498983 63499226 L1MA8 2339 + 1203 1444 57793 44 3 1 196 chain 5714 chr12 133275309 + 63517014 63517100 L1PB1 5432 + 4717 4801 82279 40 11 9 35 chain 28224 chr12 133275309 + 63517168 63517842 L1PB1 5432 + 4868 5302 44524 233 239 13 24 13 11 7 2 0 3 2 0 10 4 2 49 2 1 14 2 1 41 5 4 15 3 0 6 chain 4952 chr12 133275309 + 63517858 63517946 L1PB1 5432 + 5308 5391 85880 19 3 1 4 1 0 14 2 0 45 chain 2093 chr12 133275309 + 63517947 63517975 L1PB1 5432 + 5391 5418 105816 13 1 0 14 chain 3680 chr12 133275309 + 63524117 63524162 MADE1 96 + 51 96 93736 45 chain 11521 chr12 133275309 + 63588238 63588408 Tigger1 2417 + 1097 1265 67712 59 13 10 72 1 2 25 chain 145549 chr12 133275309 + 63592212 63593803 L1PA3long 6157 + 4569 6157 12652 1583 3 0 5 chain 533823 chr12 133275309 + 63628081 63634219 L1PA4 6152 + 1 6152 1666 3245 0 4 1260 0 1 659 0 1 56 0 1 512 1 2 255 7 0 9 0 7 128 0 5 6 chain 509681 chr12 133275309 + 63634328 63640363 L1PA5 6144 + 0 6142 2786 120 4 18 18 0 12 986 0 3 12 9 0 254 0 9 374 7 8 384 0 1 111 14 6 751 0 74 216 2 5 52 0 1 758 0 1 221 0 5 647 0 5 242 1 0 841 4 0 7 chain 26259 chr12 133275309 + 63652172 63652630 L1PA15 4387 + 3901 4352 47339 31 1 0 25 12 25 122 2 1 25 1 0 54 4 3 20 4 0 8 1 0 47 0 1 4 10 7 18 3 0 14 0 1 4 28 21 20 chain 130240 chr12 133275309 + 63686123 63687588 SVA_D 2077 + 0 2066 14006 542 0 40 268 0 558 320 0 3 335 chain 46317 chr12 133275309 + 63776228 63777068 L1MA3 4352 + 3570 4230 30914 329 1 0 129 148 0 40 81 51 60 1 0 51 chain 4955 chr12 133275309 + 63803792 63803851 MER20 218 + 2 61 85868 59 chain 18447 chr12 133275309 + 63809217 63809500 Tigger3b 1229 + 9 295 58171 95 39 36 69 0 6 80 chain 2853 chr12 133275309 + 63815814 63815853 MER96B 391 + 247 285 101231 22 1 0 16 chain 112197 chr12 133275309 + 63818710 63820513 L1M1 2793 + 859 2685 16788 34 118 114 69 14 8 25 1 5 54 11 10 44 9 10 18 4 0 19 8 0 86 0 4 303 4 2 159 0 32 24 2 1 172 1 3 51 0 3 94 11 10 62 1 2 7 0 4 17 0 1 83 8 0 51 2 1 80 9 11 41 0 5 23 4 6 21 9 8 38 1 0 11 chain 55499 chr12 133275309 + 63830370 63831463 L1P3 4156 + 3326 4139 27720 59 1 5 17 0 4 57 0 2 5 2 0 97 1 13 88 299 2 57 4 0 189 1 2 5 1 0 20 0 2 33 15 16 102 23 21 17 chain 20533 chr12 133275309 + 63929873 63930114 L1PA8A 6298 + 5509 5750 55740 241 chain 18468 chr12 133275309 + 64054986 64055200 L1P1 4361 + 4116 4328 58133 34 1 0 155 1 0 23 chain 23515 chr12 133275309 + 64139465 64141285 L1PA2 6032 + 4222 6032 51560 1074 10 0 570 1 6 6 5 0 154 chain 203890 chr12 133275309 + 64163548 64166174 L1PA10 4194 + 1528 4161 9573 102 6 18 109 4 5 169 1 2 65 1 0 25 5 2 192 0 3 257 2 1 184 1 0 88 0 1 59 0 2 101 1 0 42 5 0 145 6 5 23 5 1 931 10 19 26 3 2 9 3 0 34 1 0 11 chain 558592 chr12 133275309 + 64195587 64201618 L1PA2 6032 + 0 6032 217 482 0 1 5549 chain 17031 chr12 133275309 + 64206653 64206993 L1MB2 1706 + 1342 1675 59775 34 1 0 27 0 1 143 107 100 28 chain 9608 chr12 133275309 + 64224854 64224973 L1PA7 6471 + 6345 6470 71243 79 0 8 29 2 0 9 chain 6514 chr12 133275309 + 64280905 64280985 MLT1E1A 663 + 583 663 79292 80 chain 50158 chr12 133275309 + 64301132 64301785 PABL_B 668 + 0 668 29504 412 22 6 51 1 3 87 0 28 41 1 2 38 chain 61896 chr12 133275309 + 64319587 64320343 LTR17 781 + 0 781 25889 120 0 1 162 0 1 43 12 13 374 6 28 39 chain 54591 chr12 133275309 + 64349108 64350264 L1PB1 5432 + 4553 5404 28014 70 1 2 111 1 0 6 0 1 65 0 7 84 0 2 202 0 14 21 1 13 7 4 0 9 2 0 53 19 17 42 317 3 14 3 0 15 9 0 16 8 5 14 2 0 24 1 0 21 1 0 13 chain 33249 chr12 133275309 + 64361303 64361720 MER41A 554 + 12 424 39302 90 5 0 322 chain 11576 chr12 133275309 + 64374898 64375057 HSMAR1 1287 + 0 165 67615 107 12 18 40 chain 13959 chr12 133275309 + 64393680 64393873 MER30 238 + 37 238 63650 42 0 1 27 4 14 78 3 0 39 chain 4222 chr12 133275309 + 64543728 64543865 LTR12C 1709 + 936 1032 89994 33 25 25 23 42 1 14 chain 13827 chr12 133275309 + 64633666 64633853 MSTB-int 1649 + 0 191 63835 14 0 1 118 1 0 28 1 5 25 chain 21756 chr12 133275309 + 64665484 64665747 MER66A 478 + 7 289 54164 20 0 20 180 1 0 62 chain 7024 chr12 133275309 + 64727461 64727673 L1MB8 1703 + 1323 1545 77512 42 0 7 31 108 111 31 chain 15848 chr12 133275309 + 64741063 64741229 AluYa5 310 + 138 304 61228 166 chain 41954 chr12 133275309 + 64761340 64761905 MER41A 554 + 0 554 33385 93 1 2 33 25 13 113 1 0 143 0 1 156 chain 11578 chr12 133275309 + 64784712 64784864 L1PA8 5853 + 5701 5853 67610 39 2 1 19 1 0 42 0 2 49 chain 7189 chr12 133275309 + 64851289 64851372 L1P3 4156 + 3945 4028 76975 83 chain 22415 chr12 133275309 + 64967697 64967962 AluY 311 + 29 293 53249 104 1 0 160 chain 37428 chr12 133275309 + 64990226 64990688 LTR2 463 + 0 463 36459 360 14 15 88 chain 36155 chr12 133275309 + 64994194 64994655 LTR2 463 + 0 463 37313 368 0 1 11 17 18 65 chain 30003 chr12 133275309 + 65092065 65092419 L1PA7 6471 + 6090 6447 42051 252 0 1 7 0 2 95 chain 9270 chr12 133275309 + 65095748 65095855 U6 107 + 0 107 71979 107 chain 94632 chr12 133275309 + 65095855 65097022 L1PA8 5853 + 4682 5847 18947 325 0 2 266 1 0 245 0 1 43 1 0 44 2 0 70 2 1 44 3 5 12 2 1 19 1 0 87 chain 5297 chr12 133275309 + 65265935 65266100 MER50 708 + 450 601 84207 33 1 0 7 85 72 39 chain 242185 chr12 133275309 + 65350357 65353035 L1HS 6032 + 1910 4587 8423 2633 2 1 43 chain 22959 chr12 133275309 + 65376565 65376834 L1PA7 6471 + 6195 6463 52427 262 1 0 6 chain 35667 chr12 133275309 + 65421855 65422355 L1PREC2 3366 + 202 697 37618 7 1 0 23 1 0 12 2 1 8 2 1 4 1 0 31 1 0 111 1 0 70 2 1 35 1 4 187 chain 5526 chr12 133275309 + 65483095 65483156 THE1D 372 + 311 372 83132 61 chain 6926 chr12 133275309 + 65486515 65486616 THE1B 368 + 268 368 77866 38 7 6 56 chain 43272 chr12 133275309 + 65561999 65562613 MER41B 635 + 0 614 32596 125 1 2 248 14 13 5 0 1 57 32 31 132 chain 116227 chr12 133275309 + 65579966 65581643 L1PB1 5432 + 3756 5421 16181 323 5 15 76 0 1 26 9 7 115 0 2 148 0 4 151 5 0 79 0 2 34 0 6 66 0 1 286 19 19 21 1 0 8 19 14 8 2 0 52 2 1 15 1 0 44 1 0 12 49 35 5 1 0 14 2 0 27 1 0 19 1 0 12 1 0 17 chain 25020 chr12 133275309 + 65584467 65584728 AluYa5 310 + 49 310 49244 261 chain 3485 chr12 133275309 + 65607983 65608022 MLT1J2 417 + 243 282 95347 39 chain 24428 chr12 133275309 + 65686971 65687573 L1MA6 2487 + 1860 2394 50131 67 1 0 45 11 13 18 1 0 16 23 25 19 12 9 153 180 116 38 3 0 15 chain 4106 chr12 133275309 + 65724000 65724066 L1MA3 4352 + 4248 4310 90729 10 2 0 25 1 0 4 2 1 22 chain 19959 chr12 133275309 + 65724734 65725068 MSTA 426 + 9 390 56451 99 24 52 44 4 0 12 25 28 52 1 21 73 chain 124941 chr12 133275309 + 65744176 65745729 LTR12C 1709 + 0 1709 14716 256 2 3 79 0 43 83 0 1 135 10 11 39 0 119 68 1 0 77 0 2 196 1 0 4 4 2 106 11 4 481 chain 27142 chr12 133275309 + 65789187 65789581 MER57A1 433 + 13 410 46063 15 0 3 57 24 22 69 5 6 94 3 4 127 chain 26675 chr12 133275309 + 65813293 65813571 AluYb8 318 + 40 318 46723 278 chain 33261 chr12 133275309 + 65815033 65815668 L1PB1 5432 + 4836 5430 39293 18 0 2 146 16 17 84 3 2 12 17 0 17 1 0 12 1 0 9 8 4 9 3 1 46 1 4 11 7 6 34 10 9 15 26 17 11 2 0 10 1 0 14 2 0 24 1 0 22 1 0 12 1 0 18 1 0 4 1 0 4 chain 23338 chr12 133275309 + 65836116 65836385 AluY 311 + 39 309 51868 93 0 1 176 chain 13678 chr12 133275309 + 65885890 65886086 MER41B 635 + 353 547 64044 67 1 0 31 16 15 81 chain 59752 chr12 133275309 + 65914000 65914653 L1PA2 6032 + 5376 6029 26445 653 chain 28818 chr12 133275309 + 65920469 65920819 THE1A 353 + 0 349 43597 110 1 0 239 chain 128409 chr12 133275309 + 65920827 65922706 THE1A-int 1579 + 0 1574 14233 273 2 1 149 302 0 71 3 0 155 0 1 924 chain 3169 chr12 133275309 + 65922711 65922794 THE1A 353 + 0 84 98216 29 35 36 19 chain 16759 chr12 133275309 + 65922794 65923003 THE1A 353 + 85 293 60082 26 1 0 182 chain 5001 chr12 133275309 + 65923004 65923061 THE1A 353 + 296 353 85654 57 chain 80089 chr12 133275309 + 65974986 65975911 L1PA7 6471 + 5415 6344 21610 202 1 4 694 0 1 28 chain 262478 chr12 133275309 + 65979436 65982449 L1PA5 6144 + 2203 5221 7896 29 1 2 11 0 2 98 14 6 566 0 1 245 8 7 114 0 1 397 1 3 571 0 1 484 0 6 474 chain 6683 chr12 133275309 + 66069551 66069666 MER75 514 + 63 175 78692 29 6 0 8 0 3 13 0 2 5 7 5 47 chain 5074 chr12 133275309 + 66091177 66091254 MADE1 96 + 0 95 85284 24 7 25 46 chain 9874 chr12 133275309 + 66117210 66117332 MER2 342 + 81 213 70672 54 0 3 35 0 7 33 chain 158408 chr12 133275309 + 66133960 66136081 SVA_F 1814 + 10 1814 11848 845 32 33 4 0 1 37 1 2 16 0 15 21 254 0 180 78 0 13 2 0 10 1 0 627 chain 1760 chr12 133275309 + 66134805 66134837 SVA_F 1814 + 905 937 41896 32 chain 13970 chr12 133275309 + 66134916 66135170 SVA_F 1814 + 1033 1160 41896 51 127 0 76 chain 2065 chr12 133275309 + 66134976 66134998 SVA_F 1814 + 1142 1164 68445 22 chain 4788 chr12 133275309 + 66135043 66135094 SVA_F 1814 + 1209 1260 68445 51 chain 2799 chr12 133275309 + 66135350 66135428 SVA_F 1814 + 1037 1115 54176 78 chain 24298 chr12 133275309 + 66172250 66172552 AluSp 311 + 3 303 50328 88 0 3 203 5 0 6 chain 107711 chr12 133275309 + 66174443 66175731 SVA_A 1864 + 27 1864 17358 501 11 125 149 1 440 30 4 0 281 1 0 4 0 1 306 chain 32689 chr12 133275309 + 66185021 66185381 L1PA4 6152 + 5791 6151 39773 360 chain 25554 chr12 133275309 + 66212691 66213046 L1PA8 5853 + 5508 5853 48392 56 1 0 44 2 0 50 3 0 21 2 0 14 2 0 6 4 5 40 1 0 16 1 0 76 0 1 16 chain 3790 chr12 133275309 + 66246717 66246759 MIRc 230 + 174 216 92916 42 chain 16077 chr12 133275309 + 66315977 66316247 Tigger3a 397 + 0 321 60921 20 23 27 27 16 65 30 2 0 152 chain 259865 chr12 133275309 + 66411458 66414932 L1PA11 4918 + 8 4007 7973 6 1 0 28 2 0 37 9 6 30 1 0 10 16 14 42 1 0 32 2 0 5 2 1 132 8 8 63 0 1 77 3 4 246 1 0 486 4 0 102 12 13 57 15 42 362 1 2 30 0 1 135 0 509 220 2 0 268 0 1 150 1 0 4 0 3 15 2 0 82 0 4 424 1 0 28 1 2 6 1 0 311 chain 456913 chr12 133275309 + 66472532 66479034 L1PA5 6144 + 4 6139 4211 117 0 14 171 584 283 106 88 64 57 17 34 104 50 26 32 58 59 94 24 15 12 25 25 87 139 144 1207 0 1 397 40 0 196 0 3 380 16 5 1276 0 1 340 1 2 555 2 1 327 chain 251709 chr12 133275309 + 66479108 66482099 L1PA7 6471 + 3497 6461 8185 339 1 0 261 0 1 370 0 1 200 1 9 614 0 1 158 36 0 141 8 7 862 chain 291058 chr12 133275309 + 66487237 66491108 L1PA11 4918 + 776 4629 7101 35 5 7 171 2 0 26 3 0 174 6 7 218 0 1 5 4 8 384 1 2 37 1 2 174 1 2 4 1 0 71 0 1 155 0 4 87 1 0 426 5 1 175 0 10 254 0 1 82 1 0 65 0 1 12 14 0 286 16 17 453 1 16 181 1 0 44 0 1 20 1 0 11 2 0 65 2 0 16 1 0 16 48 35 15 1 0 13 2 0 11 47 33 18 chain 41091 chr12 133275309 + 66497776 66498226 LTR7 482 + 1 482 33911 263 0 31 187 chain 26363 chr12 133275309 + 66510999 66511358 THE1B 368 + 0 368 47172 169 1 0 29 35 45 125 chain 14451 chr12 133275309 + 66512222 66512397 THE1D-int 1627 + 12 185 62966 5 3 0 98 0 1 69 chain 542370 chr12 133275309 + 66521519 66527684 L1PA4 6152 + 3 6151 1187 12 0 1 426 5 6 132 1 0 254 34 0 308 1 7 988 0 1 407 0 1 637 1 0 1357 0 3 761 0 4 640 0 2 201 chain 56879 chr12 133275309 + 66528854 66529774 L1PB1 5432 + 4529 5415 27307 97 3 0 189 0 3 91 0 1 61 0 1 129 16 16 21 1 0 9 1 0 5 13 9 7 2 0 52 2 1 12 8 7 41 85 70 19 1 0 21 1 0 13 9 0 11 chain 13867 chr12 133275309 + 66567392 66567548 L1PA5 6144 + 2703 2859 63770 156 chain 558678 chr12 133275309 + 66578268 66584409 L1PA3long 6157 + 0 6149 210 1190 0 3 1600 0 4 3210 0 1 141 chain 13115 chr12 133275309 + 66594399 66594593 MER30 238 + 37 231 64905 70 7 0 12 8 12 59 0 3 38 chain 139808 chr12 133275309 + 66705306 66706978 L1PA8A 6298 + 4580 6292 13113 49 0 1 4 1 0 576 0 1 278 1 4 77 0 4 60 0 32 626 chain 5374 chr12 133275309 + 66732052 66732113 Tigger2b_Pri 1066 + 0 61 83830 61 chain 25451 chr12 133275309 + 66773416 66773714 L1PA7 6471 + 6169 6467 48554 298 chain 51297 chr12 133275309 + 66825837 66826456 L1PA7 6471 + 5838 6464 29131 28 0 1 281 5 11 305 chain 62215 chr12 133275309 + 66986167 66986838 L1PA3long 6157 + 5486 6157 25810 671 chain 26850 chr12 133275309 + 67049347 67049727 L1PA8 5853 + 5480 5853 46474 84 1 0 45 3 1 69 1 0 15 10 9 25 14 13 19 1 0 93 chain 45807 chr12 133275309 + 67072250 67072798 L1PA7 6471 + 5919 6468 31161 394 0 1 154 chain 20780 chr12 133275309 + 67134199 67134478 L1PA8 5853 + 5562 5836 55391 9 0 1 37 2 0 70 1 0 14 7 6 41 2 1 19 1 0 76 chain 59294 chr12 133275309 + 67135859 67136498 L1PA2 6032 + 5393 6032 26570 639 chain 310846 chr12 133275309 + 67176342 67179977 L1PA5 6144 + 2517 6143 6592 159 0 3 151 0 1 780 19 13 49 1 0 162 6 1 536 6 0 360 1 4 218 1 0 856 0 1 160 18 19 6 0 1 146 chain 55141 chr12 133275309 + 67248944 67249564 L1PA5 6144 + 5507 6127 27828 620 chain 17042 chr12 133275309 + 67347119 67347329 MSTA-int 1630 + 0 213 59765 112 0 3 98 chain 373068 chr12 133275309 + 67405275 67409669 L1PA6 6164 + 1736 6154 5605 596 5 0 110 0 3 94 0 1 42 0 4 124 4 7 101 2 0 370 0 1 26 10 10 49 0 1 128 2 1 292 0 1 951 1 7 384 0 10 259 0 3 313 1 0 530 chain 40912 chr12 133275309 + 67421248 67421791 HSMAR1 1287 + 472 1016 34024 50 0 1 23 27 24 173 0 1 192 0 2 78 chain 18137 chr12 133275309 + 67438903 67439246 THE1D 372 + 18 372 58526 142 31 78 13 37 0 43 21 22 56 chain 20548 chr12 133275309 + 67518366 67518609 AluSc 308 + 57 302 55718 204 0 2 39 chain 31307 chr12 133275309 + 67575034 67575706 MLT2A1 477 + 0 477 40888 33 0 5 127 7 5 11 0 1 21 1 2 80 0 3 85 249 46 58 chain 11796 chr12 133275309 + 67610733 67610923 MER30 238 + 37 238 67216 56 15 5 14 2 26 60 3 0 40 chain 32191 chr12 133275309 + 67687253 67687704 L1MA2 4263 + 3662 4101 40197 144 3 0 152 1 0 8 1 0 92 19 12 31 chain 5554 chr12 133275309 + 67708454 67708603 MER45A 178 + 0 154 83017 33 32 34 17 1 0 6 8 11 27 5 6 20 chain 9983 chr12 133275309 + 67713220 67713385 LTR9B 643 + 462 627 70456 13 2 0 18 1 0 4 0 1 10 1 5 72 20 18 24 chain 47650 chr12 133275309 + 67713449 67714246 HUERS-P3b-int 2065 + 1293 2052 30420 95 1 2 15 6 5 61 1 0 40 12 10 80 2 0 13 2 0 23 1 0 88 8 6 71 2 0 13 19 18 20 0 1 30 4 0 57 2 1 29 1 3 25 0 4 28 35 8 13 chain 24897 chr12 133275309 + 67714342 67714735 LTR9B 643 + 166 561 49439 21 0 1 15 3 5 13 11 12 180 49 47 101 chain 30914 chr12 133275309 + 67782098 67782470 MLT2A1 477 + 0 376 41207 168 1 5 203 chain 38095 chr12 133275309 + 67899761 67900181 L1PA2 6032 + 5605 6032 35993 269 0 7 151 chain 551603 chr12 133275309 + 67900208 67906224 L1PA2 6032 + 0 6027 632 326 1 0 538 0 6 747 0 2 1512 0 4 2892 chain 197807 chr12 133275309 + 67953294 67955463 L1PA3long 6157 + 3990 6157 9785 237 1 0 1925 1 0 5 chain 18119 chr12 133275309 + 67987248 67987521 THE1D 372 + 88 369 58549 23 0 1 54 6 10 14 6 4 122 0 1 15 6 10 27 chain 18240 chr12 133275309 + 68043948 68044538 MER1A 529 + 249 529 58422 73 319 0 32 1 4 35 7 11 51 9 11 63 chain 15353 chr12 133275309 + 68078435 68078624 MER107 203 + 8 203 61847 162 2 8 25 chain 126739 chr12 133275309 + 68287886 68289335 L1PA5 6144 + 4687 6140 14443 270 1 8 7 7 0 322 1 5 841 chain 4406 chr12 133275309 + 68302290 68302364 MER20 218 + 31 106 88865 46 11 12 17 chain 21006 chr12 133275309 + 68337605 68337867 AluSx4 309 + 19 280 55108 141 5 4 116 chain 38617 chr12 133275309 + 68352199 68352738 MER41B 635 + 0 549 35630 123 3 4 163 1 2 71 6 0 36 1 0 5 6 8 43 0 13 81 chain 5173 chr12 133275309 + 68406761 68406897 MER63A 208 + 29 167 84807 18 34 44 43 9 3 24 2 0 6 chain 22462 chr12 133275309 + 68421418 68421711 L1PA8 5853 + 5566 5853 53174 42 2 0 71 1 0 9 1 0 52 2 1 19 1 0 93 chain 4732 chr12 133275309 + 68450465 68450518 MLT2A2 560 + 507 560 87071 53 chain 40111 chr12 133275309 + 68457268 68457816 L1MA2 4263 + 3161 3708 34584 36 0 1 29 2 1 10 1 3 309 0 1 14 26 22 121 chain 15069 chr12 133275309 + 68475556 68475773 MER30 238 + 0 233 62185 18 8 13 76 6 17 109 chain 2834 chr12 133275309 + 68477374 68477405 L2a 937 + 358 389 101367 31 chain 44300 chr12 133275309 + 68484446 68484931 SVA_D 2077 + 1592 2077 31949 485 chain 24007 chr12 133275309 + 68512636 68513003 THE1D 372 + 7 371 50782 68 19 0 93 16 25 45 1 7 40 0 1 85 chain 32193 chr12 133275309 + 68514093 68514497 L1PA6 6164 + 5751 6149 40195 240 0 1 25 8 1 131 chain 41935 chr12 133275309 + 68525292 68525793 MER9a2 513 + 0 513 33405 30 0 11 46 0 1 425 chain 40711 chr12 133275309 + 68540227 68540689 LTR2 463 + 0 463 34142 368 0 1 94 chain 419418 chr12 133275309 + 68542514 68547509 Harlequin-int 5206 + 125 5202 4882 10 2 1 158 17 0 5 0 1 69 0 86 25 2 3 40 4 5 154 1 0 74 0 1 87 0 1 191 2 1 66 2 0 5 0 2 212 0 1 307 1 2 697 4 7 417 1 0 593 0 9 327 1 0 1512 1 0 8 chain 39228 chr12 133275309 + 68547511 68547978 LTR2 463 + 0 463 35194 226 6 1 135 0 1 100 chain 89310 chr12 133275309 + 68552673 68555095 L1MA1 4479 + 2866 4190 19796 42 0 1 49 1 0 27 2 0 107 1060 0 58 8 6 19 4 1 75 1 0 12 4 0 126 4 0 129 2 0 176 0 1 20 11 10 14 21 18 63 3 0 5 2 0 5 3 10 6 2 0 13 1 0 87 1 0 6 3 0 103 0 3 16 9 8 25 2 0 35 1 0 9 1 0 11 4 1 9 7 0 18 chain 10304 chr12 133275309 + 68598198 68598343 MER2 342 + 132 290 69799 47 6 18 12 0 1 80 chain 3913 chr12 133275309 + 68674362 68674411 MIR 256 + 141 190 92027 49 chain 39487 chr12 133275309 + 68756458 68757260 L1PB 1623 + 536 1016 35021 254 322 0 226 chain 32748 chr12 133275309 + 68889726 68890126 MER48 407 + 3 407 39716 27 0 1 4 1 0 122 0 1 18 0 3 228 chain 18793 chr12 133275309 + 68892886 68893133 L1PA8 5853 + 5611 5853 57791 68 1 0 11 1 0 50 2 1 19 2 1 7 1 0 85 chain 39122 chr12 133275309 + 68909528 68909991 L1PA7 6471 + 6002 6464 35269 129 0 1 189 1 0 131 1 0 12 chain 61788 chr12 133275309 + 68927714 68928392 L1PA3long 6157 + 4340 5017 25917 178 1 0 499 chain 16429 chr12 133275309 + 68962329 68962555 MER39B 650 + 12 237 60475 73 3 0 65 4 5 58 0 1 23 chain 178814 chr12 133275309 + 68988338 68990704 MER57-int 2662 + 40 2368 10643 30 45 27 11 2 1 179 0 2 23 2 0 506 2 0 212 0 2 57 5 1 313 24 20 12 0 1 4 1 0 93 1 0 4 0 1 17 9 11 275 18 1 65 3 0 111 0 1 234 5 14 64 2 0 10 1 0 26 chain 1712 chr12 133275309 + 68990725 68991030 THE1B-int 1605 + 990 1293 35879 30 2 0 273 chain 553974 chr12 133275309 + 68991049 68997191 L1PA3long 6157 + 5 6157 484 208 0 17 484 8 1 325 6 5 206 0 1 955 0 2 183 0 4 721 0 1 823 7 0 2216 chain 1752 chr12 133275309 + 68997224 68997536 THE1B-int 1605 + 1293 1605 35879 32 0 1 18 1 0 261 chain 25546 chr12 133275309 + 68997538 68997891 THE1B 368 + 2 367 48411 42 0 15 57 4 5 40 12 11 118 3 0 77 chain 32705 chr12 133275309 + 69006046 69006553 MER4B 649 + 0 544 39759 59 0 1 29 1 0 68 0 42 44 1 6 83 8 0 12 0 15 23 0 3 35 5 0 5 10 0 49 18 13 57 chain 3166 chr12 133275309 + 69013617 69013658 MER31B 477 + 435 477 98237 33 0 1 8 chain 162788 chr12 133275309 + 69049795 69052024 L1PB1 5432 + 3213 5423 11558 52 5 6 162 2 1 132 0 2 126 0 7 20 0 4 901 3 0 158 2 1 19 0 9 27 11 10 185 11 12 5 1 0 35 0 1 15 15 11 26 1 0 6 1 0 12 5 1 8 2 0 53 2 1 15 1 0 41 7 6 13 69 50 24 1 0 21 1 0 13 1 0 19 chain 37021 chr12 133275309 + 69073436 69073997 L1PB2 3958 + 3295 3838 36722 12 2 0 56 1 0 11 6 0 12 1 2 15 1 0 29 23 21 92 2 0 73 1 0 63 1 0 71 3 1 22 1 0 63 chain 153162 chr12 133275309 + 69081094 69082789 L1PA3long 6157 + 4453 6147 12167 835 1 0 859 chain 37135 chr12 133275309 + 69114305 69114874 MLT2A2 560 + 0 560 36658 27 21 0 142 12 11 12 32 35 97 6 3 75 0 11 57 1 3 87 chain 62724 chr12 133275309 + 69139517 69140264 MER4E 760 + 0 753 25705 23 0 1 497 0 1 157 0 2 53 0 2 17 chain 18212 chr12 133275309 + 69148111 69148475 THE1D 372 + 0 360 58451 15 1 3 17 78 69 84 9 7 43 0 6 63 1 0 4 1 2 21 7 6 20 chain 26918 chr12 133275309 + 69168382 69168839 MER51B 395 + 0 380 46384 39 13 0 48 68 6 96 1 0 39 9 8 144 chain 33386 chr12 133275309 + 69185978 69186419 MER4A1 472 + 0 472 39190 232 0 22 13 7 14 88 0 2 101 chain 136126 chr12 133275309 + 69189969 69191766 MER4-int 2692 + 3 1775 13425 8 1 0 24 3 1 63 1 0 19 9 5 13 1 2 351 1 0 226 14 0 6 1 2 49 25 12 98 0 1 35 0 1 191 0 1 82 0 3 120 0 1 161 0 1 207 0 1 4 1 0 19 1 2 63 chain 31353 chr12 133275309 + 69191766 69192204 MER4A1 472 + 16 472 40845 214 23 45 10 13 9 178 chain 15495 chr12 133275309 + 69203344 69203631 LTR3B_ 500 + 157 457 61662 89 3 0 8 0 3 46 0 1 36 70 82 35 chain 15935 chr12 133275309 + 69226146 69226356 L1MA1 4479 + 1101 1319 61111 18 0 1 177 3 10 12 chain 185891 chr12 133275309 + 69307254 69309288 L1PA3long 6157 + 4115 6152 10302 419 0 1 1523 1 3 91 chain 7791 chr12 133275309 + 69323852 69324070 MLT1B 390 + 149 376 75391 21 32 40 18 64 65 83 chain 26872 chr12 133275309 + 69332487 69332907 LTR7B 505 + 0 498 46438 26 0 33 49 0 10 57 0 38 12 31 25 28 1 3 84 1 0 23 0 1 22 0 2 28 17 16 41 chain 14859 chr12 133275309 + 69399177 69399945 L1MB7 1623 + 900 1605 62446 20 28 21 43 11 10 43 1 0 7 0 8 88 1 9 17 169 137 17 291 254 23 1 0 8 chain 11784 chr12 133275309 + 69498425 69498671 MER30 238 + 0 238 67244 15 7 16 68 57 30 23 0 6 22 4 5 5 0 3 45 chain 26369 chr12 133275309 + 69552023 69552327 AluSp 311 + 0 307 47163 91 0 3 213 chain 3872 chr12 133275309 + 69588797 69588845 MER1B 344 + 285 332 92341 18 1 0 29 chain 14348 chr12 133275309 + 69591731 69591914 MER107 203 + 5 203 63115 123 1 0 5 0 1 15 1 0 8 0 16 30 chain 33206 chr12 133275309 + 69683389 69683837 MER4A1 472 + 0 472 39344 15 0 2 81 0 1 127 20 39 80 0 2 125 chain 542457 chr12 133275309 + 69938700 69944689 L1PA3long 6157 + 19 6152 1179 133 0 1 55 0 1 155 0 1 411 0 128 117 2 1 378 9 0 639 0 19 2302 0 4 1788 chain 12222 chr12 133275309 + 69944736 69944886 L1PA7 6471 + 6318 6465 66432 141 3 0 6 chain 18185 chr12 133275309 + 69949535 69949767 MER30 238 + 0 238 58479 31 4 0 79 4 14 114 chain 2902 chr12 133275309 + 69959923 69959954 MIRb 242 + 164 195 100824 31 chain 35808 chr12 133275309 + 69986533 69986925 L1PA2 6032 + 5630 6023 37520 388 0 1 4 chain 555203 chr12 133275309 + 70013065 70019067 L1PA2 6032 + 14 6016 396 510 4 0 9 0 4 5479 chain 46716 chr12 133275309 + 70051720 70052279 L1P1 4361 + 1341 1884 30764 172 26 10 361 chain 24503 chr12 133275309 + 70058621 70058942 L1PA15 4387 + 1555 1877 50016 143 5 2 6 0 1 28 0 3 139 chain 5898 chr12 133275309 + 70073672 70073747 MER51B 395 + 307 384 81495 5 0 2 70 chain 40233 chr12 133275309 + 70085289 70085729 LTR7Y 441 + 0 441 34493 334 0 1 106 chain 292111 chr12 133275309 + 70085729 70089379 HERVH-int 3825 + 0 3762 7067 489 2 0 11 165 31 39 1 0 10 1 0 19 11 23 9 3 0 25 1 0 38 4 3 81 0 3 660 0 1 174 1 0 69 4 31 1156 0 1 197 9 11 39 8 218 424 chain 4776 chr12 133275309 + 70086293 70086346 HERVH-int 3825 + 436 489 86825 53 chain 39468 chr12 133275309 + 70089824 70090295 LTR7Y 441 + 0 441 35028 165 31 0 169 0 1 106 chain 60290 chr12 133275309 + 70092134 70093402 L1PA15 4387 + 3398 4356 26299 177 0 5 182 4 13 37 347 25 50 17 15 5 2 0 16 10 9 172 1 0 26 1 0 41 0 14 23 4 0 9 1 0 50 10 7 34 5 7 10 7 4 27 chain 24989 chr12 133275309 + 70124230 70124640 L1MA2 4263 + 3710 4111 49300 63 0 3 20 16 14 148 19 17 83 15 8 39 1 0 6 chain 180888 chr12 133275309 + 70155655 70158415 MER4-int 2692 + 51 2692 10551 35 0 1 38 4 1 55 5 6 58 0 1 185 14 0 119 0 10 26 10 9 127 6 5 74 0 1 62 1 0 55 0 1 386 0 5 15 2 0 41 0 9 35 1 0 8 1 0 9 138 0 46 4 7 17 27 22 115 25 32 51 0 1 145 8 9 31 1 0 18 34 35 157 0 2 158 0 1 6 29 24 143 4 15 15 3 0 207 0 1 6 chain 174337 chr12 133275309 + 70201158 70203774 SVA_E 1901 + 0 1892 10879 153 1 0 664 1 0 26 1 0 80 493 0 85 222 0 745 6 0 139 chain 14847 chr12 133275309 + 70202136 70202487 SVA_E 1901 + 931 1106 36918 66 175 0 98 1 0 11 chain 6407 chr12 133275309 + 70202202 70202286 SVA_E 1901 + 1172 1256 50760 84 chain 2241 chr12 133275309 + 70202325 70202372 SVA_E 1901 + 1119 1167 55706 21 0 1 26 chain 2051 chr12 133275309 + 70202534 70202577 SVA_E 1901 + 1231 1274 55706 43 chain 6556 chr12 133275309 + 70202684 70202839 SVA_E 1901 + 1106 1261 36918 155 chain 489 chr12 133275309 + 70202853 70202882 SVA_E 1901 + 979 1008 81175 29 chain 5205 chr12 133275309 + 70231582 70231697 MSTB 430 + 268 382 84656 21 31 30 43 0 2 8 2 0 10 chain 27948 chr12 133275309 + 70382163 70382457 AluYd8 298 + 0 294 44952 294 chain 60403 chr12 133275309 + 70392241 70392983 L1PA7 6471 + 5726 6466 26265 221 6 6 11 9 0 23 0 3 132 1 0 321 0 5 18 chain 29425 chr12 133275309 + 70444513 70444888 MSTA-int 1630 + 0 377 42703 12 1 2 272 1 2 89 chain 29274 chr12 133275309 + 70460925 70461334 MSTA-int 1630 + 1251 1622 42932 267 1 0 39 37 0 65 chain 31930 chr12 133275309 + 70466079 70466565 LTR19A 502 + 0 502 40389 173 38 0 22 10 46 41 8 14 11 5 6 15 0 10 120 0 1 43 chain 196509 chr12 133275309 + 70469396 70472019 MER61-int 3695 + 23 2681 9827 6 0 2 13 1 2 24 1 5 14 3 11 133 7 7 30 5 4 136 1 2 45 17 0 9 4 17 54 7 6 99 2 0 113 2 0 20 0 3 46 0 9 15 0 5 279 8 13 297 0 1 176 0 5 791 0 1 199 1 0 52 0 1 13 chain 129974 chr12 133275309 + 70474362 70475851 L1PA5 6144 + 4628 6120 14042 242 0 4 756 6 6 215 1 0 269 chain 24145 chr12 133275309 + 70487146 70487473 L1P4 1494 + 1064 1389 50583 103 1 0 183 6 5 34 chain 5277 chr12 133275309 + 70511033 70511099 LTR48B 642 + 545 611 84300 66 chain 23064 chr12 133275309 + 70585387 70586481 THE1D 372 + 0 372 52268 62 3 13 91 33 33 47 731 0 93 2 1 32 chain 31014 chr12 133275309 + 70595077 70595447 L1PA7 6471 + 6089 6458 41110 208 0 1 4 1 0 19 8 7 130 chain 8186 chr12 133275309 + 70620666 70620815 L1PB4 2604 + 2391 2552 74449 73 39 0 8 0 51 29 chain 286956 chr12 133275309 + 70629203 70632585 L1PA6 6164 + 2757 6162 7231 211 4 5 217 0 1 47 7 6 72 0 1 112 6 7 201 0 27 602 18 5 94 0 4 1168 3 5 276 1 0 105 6 7 232 chain 2975 chr12 133275309 + 70643925 70644244 MER57F 435 + 93 421 100110 22 264 273 33 chain 5028 chr12 133275309 + 70692333 70692442 MER3 215 + 44 161 85527 16 22 31 21 4 3 46 chain 77903 chr12 133275309 + 70708987 70710219 L1PA13 3608 + 2383 3518 22121 159 0 1 74 1 2 30 0 6 112 1 0 56 0 4 97 0 1 30 22 1 16 6 7 63 7 0 118 1 0 113 2 0 42 92 28 18 0 1 30 1 0 4 2 0 47 2 0 5 2 0 20 1 0 20 26 18 12 chain 552877 chr12 133275309 + 70765021 70771163 L1PA3long 6157 + 0 6156 553 742 1 0 2045 1 2 473 0 6 1295 0 1 334 0 1 686 0 5 153 0 1 412 chain 50407 chr12 133275309 + 70782280 70782847 L1PA5 6144 + 5575 6144 29410 343 0 1 59 0 1 165 chain 58958 chr12 133275309 + 70807586 70808581 MER11B 1079 + 32 1042 26678 284 1 18 24 0 5 94 28 27 12 26 14 13 0 1 12 1 2 38 0 1 6 0 4 8 5 0 67 42 49 7 1 0 20 46 40 16 5 7 16 10 11 49 1 2 163 chain 35201 chr12 133275309 + 70862367 70862750 L1PA3long 6157 + 5774 6157 37897 383 chain 8920 chr12 133275309 + 70864644 70864793 THE1B 368 + 1 151 72741 102 31 32 16 chain 291934 chr12 133275309 + 70865932 70869194 L1PA4 6152 + 2885 6151 7078 371 0 3 676 7 0 416 0 4 970 1 2 425 0 3 396 chain 79588 chr12 133275309 + 70878354 70879262 L1PA5 6144 + 5237 6144 21722 542 1 0 365 chain 29094 chr12 133275309 + 70897550 70897876 L1PA4 6152 + 5536 5862 43195 326 chain 25553 chr12 133275309 + 70897876 70898163 L1PA4 6152 + 5865 6152 48396 287 chain 14242 chr12 133275309 + 70902535 70902858 L1PB1 5432 + 5114 5406 63276 22 1 0 11 1 0 10 6 2 9 2 0 31 1 0 21 2 1 16 1 0 44 1 0 14 68 51 19 1 0 5 1 0 21 2 1 8 0 1 5 chain 8475 chr12 133275309 + 70906916 70907016 HY3 101 + 0 100 73736 100 chain 18556 chr12 133275309 + 71027975 71028323 MER1B 344 + 0 343 58041 17 34 29 137 23 20 13 4 0 37 28 35 55 chain 485108 chr12 133275309 + 71098373 71103641 L1PA2 6032 + 767 6032 3532 357 1 0 2136 4 3 95 1 0 2674 chain 557368 chr12 133275309 + 71118072 71124103 L1PA2 6032 + 1 6032 279 316 1 0 807 1 0 955 0 2 1100 0 1 176 1 0 2674 chain 79173 chr12 133275309 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221681 chr12 133275309 + 71411223 71414610 L1PB2 3958 + 108 3838 8989 32 2 0 20 8 0 12 8 0 8 1 0 47 1 0 4 2 0 228 1 0 10 11 2 91 7 6 53 1 2 152 0 1 399 2 1 80 7 1 72 0 9 237 95 4 15 2 0 30 20 497 50 1 0 71 19 20 210 7 5 28 6 10 142 56 0 59 5 6 147 0 2 53 2 1 30 0 1 210 16 15 7 0 1 29 0 23 39 0 4 25 2 0 51 3 6 8 8 0 36 19 31 10 1 0 85 12 11 33 0 8 27 7 6 57 6 5 68 0 4 12 7 0 7 0 6 58 chain 36086 chr12 133275309 + 71434954 71435440 L1PB3 3668 + 2866 3349 37346 72 0 1 48 2 0 18 2 0 80 2 1 128 0 1 4 1 0 47 0 2 23 1 0 58 chain 29088 chr12 133275309 + 71520521 71520872 L1PA6 6164 + 5809 6160 43208 351 chain 15748 chr12 133275309 + 71552030 71552250 L1PA8 5853 + 5637 5853 61356 36 7 6 11 2 1 49 2 1 19 1 0 93 chain 34949 chr12 133275309 + 71593271 71593703 MER4A1 472 + 14 472 38056 107 0 4 105 0 22 220 chain 3812 chr12 133275309 + 71697906 71697951 Tigger4a 237 - 96 141 92766 45 chain 3732 chr12 133275309 + 71721367 71721412 MER72B 755 + 17 62 93388 45 chain 13021 chr12 133275309 + 71746224 71746415 MER2 342 + 20 218 65086 46 14 21 131 chain 3402 chr12 133275309 + 71776673 71776709 LTR8 732 + 590 626 96043 36 chain 9996 chr12 133275309 + 71900377 71900506 MER85 139 + 0 139 70436 99 0 2 9 0 8 21 chain 99215 chr12 133275309 + 71910688 71911773 L1PA3long 6157 + 5061 6147 18386 239 0 1 846 chain 10007 chr12 133275309 + 71919712 71919838 MER85 139 + 2 139 70410 88 1 12 37 chain 11316 chr12 133275309 + 71947441 71947606 MER53 195 + 0 166 68059 104 6 8 18 1 0 36 chain 14241 chr12 133275309 + 71977964 71978185 Tigger3a 397 + 139 396 63277 110 0 33 40 28 31 43 chain 36312 chr12 133275309 + 72091612 72092085 LTR3B_ 500 + 0 475 37207 303 0 1 92 8 10 15 4 3 51 chain 136457 chr12 133275309 + 72184856 72186604 LTR12C 1709 + 0 1709 13395 104 5 4 158 5 0 487 0 2 77 1 59 172 0 7 41 1 0 5 3 1 79 0 3 25 0 4 168 102 0 241 2 0 72 chain 3852 chr12 133275309 + 72253114 72253173 MER6B 211 + 152 211 92492 15 0 2 29 3 1 12 chain 19422 chr12 133275309 + 72326292 72326565 L1PA8 5853 + 5586 5853 57110 19 5 3 73 1 0 6 10 9 44 2 1 19 1 0 93 chain 9667 chr12 133275309 + 72357107 72357242 L1PREC2 3366 + 2644 2776 71125 100 1 0 5 5 3 24 chain 93453 chr12 133275309 + 72363161 72364194 L1PA3long 6157 + 3533 4568 19121 164 0 2 869 chain 5099 chr12 133275309 + 72413324 72413379 MER33 330 + 8 63 85167 55 chain 98349 chr12 133275309 + 72446307 72447435 L1P2 5180 + 1941 3062 18505 379 5 0 139 2 0 603 chain 51612 chr12 133275309 + 72594698 72595272 L1PA3long 6157 + 5581 6156 28994 127 1 2 446 chain 39243 chr12 133275309 + 72703221 72703672 LTR7 482 + 0 482 35181 263 1 32 187 chain 295062 chr12 133275309 + 72703674 72707379 HERVH-int 3825 + 0 3815 6983 212 0 11 264 61 0 45 5 0 38 2 1 9 1 0 9 4 0 8 13 7 14 1 0 13 3 0 7 44 0 15 21 0 45 2 22 9 2 1 49 1 0 444 15 0 218 0 1 243 4 31 1404 8 218 254 3 8 215 chain 37835 chr12 133275309 + 72708521 72708969 LTR7 482 + 0 482 36180 213 0 1 49 1 32 65 0 1 4 1 2 115 chain 30434 chr12 133275309 + 72726171 72726731 L1PB1 5432 + 4898 5427 41645 152 0 1 30 22 21 15 0 1 18 1 0 9 2 1 10 24 18 46 2 1 16 1 0 43 1 0 16 1 0 4 19 8 19 24 19 24 1 0 13 0 1 7 1 0 13 1 0 18 2 0 5 chain 54073 chr12 133275309 + 72755827 72756511 L1PA8A 6298 + 5589 6292 28200 101 0 5 14 5 7 364 0 2 5 2 0 5 5 17 183 chain 174956 chr12 133275309 + 72779889 72782016 L1P3 4156 + 0 2116 10839 56 9 1 111 5 1 22 1 0 60 2 1 67 2 1 522 1 0 393 0 4 132 0 1 744 chain 22006 chr12 133275309 + 72782016 72782317 L1PA7 6471 + 6157 6461 53829 69 7 11 42 10 8 32 4 5 137 chain 26926 chr12 133275309 + 72815201 72815722 MER4D 903 + 113 642 46369 160 10 8 59 92 95 20 17 20 74 2 0 27 16 22 44 chain 19698 chr12 133275309 + 72885601 72885827 L1PA7 6471 + 6242 6468 56788 226 chain 16019 chr12 133275309 + 72962008 72962244 L1PA8 5853 + 5612 5847 61006 66 2 1 9 12 10 42 2 1 19 1 0 36 0 4 47 chain 18094 chr12 133275309 + 72986369 72986809 MER44B 551 + 68 503 58566 78 136 136 132 1 0 7 33 32 9 3 0 41 chain 44080 chr12 133275309 + 73000875 73001358 LTR7 482 + 0 482 32097 249 1 0 233 chain 11311 chr12 133275309 + 73034385 73034672 L1PB1 5432 + 5114 5374 68066 24 30 24 5 2 0 44 0 1 8 2 1 10 8 7 43 1 0 15 2 0 6 15 6 14 14 11 15 2 0 22 1 0 4 chain 13349 chr12 133275309 + 73067007 73067177 HERVL-int 5654 + 2159 2328 64544 31 1 0 138 chain 9751 chr12 133275309 + 73094616 73094741 THE1B 368 + 243 368 70929 125 chain 8838 chr12 133275309 + 73130853 73131028 L1PA15 4387 + 4091 4259 72897 13 1 0 25 22 21 35 1 0 17 0 1 4 4 0 10 5 4 38 chain 47890 chr12 133275309 + 73140286 73140855 L1PA7 6471 + 5147 5721 30332 476 0 5 93 chain 4593 chr12 133275309 + 73162757 73162813 MER4A1 472 + 416 472 87829 56 chain 77622 chr12 133275309 + 73166801 73167915 MER4-int 2692 + 77 1209 22179 7 3 0 15 2 0 16 4 5 167 10 11 194 20 18 5 1 0 208 4 3 55 1 14 28 0 8 303 8 12 63 chain 57630 chr12 133275309 + 73168926 73169571 L1PA4 6152 + 5493 6138 27075 645 chain 17616 chr12 133275309 + 73219170 73219426 L1PA7 6471 + 6199 6468 59106 165 1 2 22 16 17 18 0 11 34 chain 42274 chr12 133275309 + 73240779 73241308 L1PA7 6471 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34598 350 5 6 24 0 1 101 chain 553986 chr12 133275309 + 73394809 73400830 L1PA2 6032 + 1 6030 483 740 0 1 866 0 4 1372 0 1 454 0 1 1660 0 1 929 chain 12439 chr12 133275309 + 73412602 73412753 L1P1 4361 + 2248 2400 66083 113 0 1 38 chain 24289 chr12 133275309 + 73469872 73470178 L1PB1 5432 + 4764 5070 50347 48 0 1 238 2 1 18 chain 38457 chr12 133275309 + 73481422 73481873 LTR2 463 + 0 463 35748 361 1 13 89 chain 6093 chr12 133275309 + 73493591 73493684 L1MA7 2200 + 1548 1641 80760 9 1 0 48 2 3 33 chain 222129 chr12 133275309 + 73572105 73575712 L1P2 5180 + 4 3303 8980 79 27 15 40 12 11 90 250 94 14 41 14 85 19 0 58 0 1 6 28 15 12 133 57 32 37 20 90 21 0 50 0 15 242 0 1 5 2 1 33 36 39 167 0 3 429 1 0 25 5 27 268 0 1 276 13 0 445 1 2 15 8 12 61 1 0 329 1 0 120 chain 520713 chr12 133275309 + 73605703 73611829 L1PA5 6144 + 0 6128 2235 299 9 0 792 2 1 77 9 0 540 4 14 12 0 8 268 0 1 169 1 0 511 13 14 16 0 3 883 0 1 73 2 0 551 0 1 1060 1 0 834 chain 25201 chr12 133275309 + 73615924 73616203 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73734232 73734421 L1PA7 6471 + 5947 6136 60368 189 chain 27354 chr12 133275309 + 73734421 73734741 L1PA7 6471 + 6137 6457 45757 320 chain 49684 chr12 133275309 + 73762487 73763068 LTR10C 591 + 0 583 29691 510 0 2 71 chain 10316 chr12 133275309 + 73811251 73811398 L1PA8 5853 + 5708 5853 69773 28 6 5 18 2 1 93 chain 26637 chr12 133275309 + 73825649 73826004 MLT2A1 477 + 0 362 46778 138 0 1 29 0 4 97 13 16 38 1 0 39 chain 442617 chr12 133275309 + 73826172 73832142 HERVL-int 5654 + 0 5643 4528 312 1 0 108 0 2 233 10 9 196 42 34 143 0 2 86 337 0 83 0 2 117 26 0 67 2 0 448 0 16 412 6 8 412 1 0 4 0 1 52 0 1 122 0 1 10 0 1 67 8 0 419 0 3 135 0 4 456 0 2 65 7 10 258 0 1 411 0 2 232 5 3 50 11 12 338 0 1 77 1 2 15 0 5 19 0 3 83 0 5 83 chain 8647 chr12 133275309 + 73832157 73832264 MLT2A1 477 + 4 111 73361 107 chain 9990 chr12 133275309 + 73833333 73833448 THE1C-int 1605 + 1485 1600 70445 115 chain 83557 chr12 133275309 + 73846817 73847851 L1PA7 6471 + 5426 6457 20900 28 0 3 164 9 8 241 19 13 256 0 1 317 chain 25649 chr12 133275309 + 73887533 73887806 AluYb8 318 + 34 307 48245 273 chain 50139 chr12 133275309 + 73895880 73896454 L1PA5 6144 + 5561 6135 29509 574 chain 369873 chr12 133275309 + 73924153 73928494 L1P1 4361 + 4 4341 5661 427 0 1 242 6 3 1116 1 3 1887 1 0 467 1 0 155 1 0 23 2 1 12 chain 12723 chr12 133275309 + 73928950 73929093 L1PA5 6144 + 5378 5521 65573 143 chain 53919 chr12 133275309 + 73929093 73929702 L1PA5 6144 + 5523 6132 28254 609 chain 192349 chr12 133275309 + 73970609 73972957 L1PA7 6471 + 4113 6468 10005 145 0 5 34 4 1 375 0 4 620 2 1 301 0 4 15 19 12 303 1 3 321 0 3 208 chain 534857 chr12 133275309 + 73977927 73983896 L1PA3long 6157 + 1 6157 1627 141 0 60 162 0 1 387 24 152 48 1 0 1374 1 0 936 2 1 1019 0 1 1874 chain 28618 chr12 133275309 + 73995875 73996181 AluYa5 310 + 0 304 43921 132 2 0 172 chain 370665 chr12 133275309 + 74034885 74040067 HERVL-int 5654 + 788 5654 5640 78 0 5 38 6 0 215 3 2 207 16 36 355 8 10 70 0 1 215 0 3 57 0 9 256 0 1 284 2 1 141 0 1 76 0 2 25 15 16 318 2 1 290 0 1 116 0 1 109 0 1 29 10 17 59 0 2 140 0 1 103 2 1 12 20 21 481 354 0 630 16 5 298 32 32 94 chain 23454 chr12 133275309 + 74044675 74045069 L1PB2 3958 + 3467 3838 51666 75 1 3 51 6 7 14 1 0 4 22 0 7 0 1 48 6 5 73 2 0 19 10 9 55 chain 65874 chr12 133275309 + 74052302 74053100 L1PA7 6471 + 5345 6147 24982 279 1 5 69 0 2 93 0 1 167 3 0 186 chain 335635 chr12 133275309 + 74057874 74061703 L1PA5 6144 + 2308 6140 6134 856 1 0 644 0 1 121 3 4 496 0 1 281 4 1 259 0 1 373 0 1 186 0 1 437 5 6 163 chain 16527 chr12 133275309 + 74063876 74064084 HERVL-int 5654 + 1507 1714 60334 41 4 3 163 chain 70296 chr12 133275309 + 74064091 74064975 HERVL-int 5654 + 1723 2624 23926 245 1 2 244 0 13 277 8 11 109 chain 6516 chr12 133275309 + 74065013 74065103 HERVL-int 5654 + 2657 2747 79287 90 chain 25143 chr12 133275309 + 74065103 74065446 HERVL-int 5654 + 2748 3100 49049 164 0 6 35 20 23 124 chain 37072 chr12 133275309 + 74065450 74065926 HERVL-int 5654 + 3106 3582 36698 476 chain 52838 chr12 133275309 + 74065930 74066600 HERVL-int 5654 + 3587 4263 28630 586 6 11 9 0 1 69 chain 275155 chr12 133275309 + 74066888 74070721 L1PA10 4194 + 405 4159 7577 4 0 1 65 12 9 4 1 0 34 18 21 910 0 1 17 1 0 138 4 3 12 1 0 32 4 3 358 0 8 198 0 7 154 11 18 39 0 1 36 0 4 147 6 7 104 10 11 89 0 1 137 120 12 265 1 0 4 0 1 468 0 1 52 0 5 245 3 4 46 5 4 27 15 12 26 1 0 9 chain 85204 chr12 133275309 + 74091735 74092686 L1PA3long 6157 + 5205 6157 20584 455 0 1 496 chain 23004 chr12 133275309 + 74144155 74144425 AluY 311 + 40 308 52350 93 2 0 175 chain 41314 chr12 133275309 + 74219606 74220122 L1PA7 6471 + 5936 6457 33778 139 0 8 60 3 0 131 14 14 169 chain 81556 chr12 133275309 + 74259973 74260871 MER11D 897 + 0 897 21324 287 1 0 610 chain 32143 chr12 133275309 + 74264308 74264745 LTR2 463 + 1 463 40233 54 0 3 86 2 3 15 7 27 32 0 5 39 4 0 6 0 1 167 1 0 24 chain 523820 chr12 133275309 + 74265514 74272561 HERVE_a-int 7009 + 135 6990 2100 21 3 0 28 1 0 73 13 9 21 11 8 6 1 0 8 1 0 14 27 17 4 1 0 9 1 0 6 3 1 18 28 0 35 4 2 23 2 1 44 1 0 21 1 0 53 1 0 35 1 0 62 11 4 32 1 0 12 1 0 15 2 1 34 1 0 9 1 0 55 2 0 27 1 0 66 1 0 27 1 0 8 1 0 73 2 1 29 4 3 39 2 0 15 1 0 52 1 0 21 1 0 15 2 1 5 1 0 12 8 4 15 2 1 6 1 0 15 1 0 23 1 0 5 1 0 7 1 0 10 1 0 6 1 0 4 1 0 57 2 0 57 1 0 23 4 3 13 1 0 114 2 1 19 1 0 6 12 15 9 2 1 18 1 0 10 2 1 4 1 0 20 1 0 41 1 0 40 1 0 60 1 0 36 1 0 7 2 1 35 1 0 43 1 0 24 1 0 16 1 0 24 1 0 12 1 0 94 2 1 25 6 4 29 37 30 8 1 0 144 1 0 14 1 0 37 0 1 169 1 0 364 0 4 36 1 0 43 0 3 6 0 4 29 2 0 421 1 0 79 1 0 39 0 1 879 0 1 504 2 0 328 9 0 114 2 1 25 1 0 9 1 0 67 1 2 4 1 0 8 1 0 41 1 0 22 2 1 4 0 1 82 1 0 12 1 0 258 2 0 90 13 12 13 1 0 5 1 0 56 3 1 32 4 3 77 2 0 136 1 0 44 1 0 32 1 0 10 1 0 16 1 0 5 2 0 7 2 1 36 6 5 16 5 4 42 2 1 4 1 0 27 7 5 55 2 1 33 5 2 54 3 1 27 7 6 24 1 0 6 3 1 13 1 0 21 5 3 34 4 2 15 32 24 24 chain 34445 chr12 133275309 + 74272588 74273021 LTR2 463 + 0 463 38401 37 0 10 115 7 27 190 0 6 6 6 0 72 chain 440934 chr12 133275309 + 74276228 74281931 HERVL-int 5654 + 0 5636 4557 56 9 13 35 0 1 369 1 0 305 1 2 148 10 11 98 0 2 790 3 4 238 18 0 135 90 29 368 11 0 168 31 32 46 0 2 119 1 2 233 0 1 212 8 9 76 1 2 106 6 0 403 0 3 6 4 1 421 6 12 16 6 4 175 6 7 354 2 1 66 1 2 328 0 5 14 0 1 119 0 2 84 chain 30262 chr12 133275309 + 74281949 74282429 MLT2A1 477 + 0 477 41797 85 1 0 4 1 2 51 8 9 18 1 5 49 1 0 161 3 1 8 9 0 7 14 11 42 1 4 10 0 4 6 chain 16462 chr12 133275309 + 74361605 74361949 THE1D 372 + 16 353 60433 24 16 7 22 40 41 56 43 45 13 1 0 129 chain 13044 chr12 133275309 + 74387769 74387907 L1PA2 6032 + 5702 5840 65036 138 chain 95282 chr12 133275309 + 74402761 74403902 LTR12C 1709 + 0 1696 18871 48 2 0 529 2 1 121 0 159 253 1 0 5 3 1 56 0 402 121 chain 26580 chr12 133275309 + 74428243 74428596 L1PA8 5853 + 4779 5140 46857 227 1 7 61 8 10 56 chain 70398 chr12 133275309 + 74430414 74431199 L1PA4 6152 + 5093 5879 23894 763 0 1 22 chain 118144 chr12 133275309 + 74469465 74471013 L1PA10 4194 + 2589 4161 15861 40 16 18 9 1 0 7 9 12 404 1 9 41 0 13 291 5 8 675 4 1 33 1 0 11 chain 211545 chr12 133275309 + 74494590 74496980 L1PA5 6144 + 3749 6144 9301 592 0 4 283 1 0 389 0 1 202 0 1 923 chain 21266 chr12 133275309 + 74631372 74631628 L1PA7 6471 + 3895 4151 54807 256 chain 3069 chr12 133275309 + 74639321 74639373 L1MA8 2339 + 2219 2267 99103 14 2 0 25 1 0 4 1 0 5 chain 518662 chr12 133275309 + 74676082 74682532 L1PA7 6471 + 3 6466 2330 133 28 21 112 2 0 92 1 2 86 0 1 164 1 0 4 4 6 27 5 6 476 0 1 110 0 1 306 8 0 184 4 69 333 1 0 22 0 1 130 2 1 345 58 0 64 1 2 874 0 2 33 0 1 212 0 5 7 12 7 137 0 1 4 1 0 16 5 10 82 0 1 111 0 1 63 0 1 255 5 9 1080 0 3 691 1 0 158 chain 4184 chr12 133275309 + 74751304 74751348 Tigger1 2417 + 1154 1198 90239 44 chain 133291 chr12 133275309 + 74788196 74789835 L1PA7 6471 + 1892 3513 13717 123 0 10 14 0 1 601 35 6 517 5 6 119 0 1 4 1 0 200 1 0 19 chain 28977 chr12 133275309 + 74812398 74812724 L1PA3long 6157 + 5831 6156 43367 309 1 0 16 chain 68948 chr12 133275309 + 74814159 74815161 LTR12 884 + 5 884 24225 20 1 0 230 125 0 85 0 1 36 2 0 33 9 11 195 0 1 202 1 2 63 chain 30057 chr12 133275309 + 74835828 74836224 THE1B-int 1605 + 30 425 41996 84 16 15 296 chain 565973 chr12 133275309 + 74874868 74880901 L1HS 6032 + 0 6032 69 341 4 0 2708 1 0 2111 0 4 868 chain 11604 chr12 133275309 + 74893710 74893847 L1PA7 6471 + 6080 6218 67561 56 0 1 81 chain 20308 chr12 133275309 + 74893848 74894090 L1PA7 6471 + 6229 6467 56008 232 4 0 6 chain 52676 chr12 133275309 + 74923693 74924266 L1PA3long 6157 + 5584 6157 28673 573 chain 66503 chr12 133275309 + 74926384 74927169 L1PA6 6164 + 5353 6145 24818 233 0 6 6 0 1 546 chain 65397 chr12 133275309 + 74950100 74950842 L1PA4 6152 + 5408 6151 25090 73 1 0 498 1 2 165 0 1 4 chain 83414 chr12 133275309 + 74996408 74997345 L1PA4 6152 + 5199 6143 20929 105 0 4 11 0 1 56 1 3 764 chain 25189 chr12 133275309 + 75012442 75012804 MLT2A1 477 + 0 477 48966 169 4 1 10 1 2 8 1 0 14 0 1 59 16 79 42 0 54 38 chain 234632 chr12 133275309 + 75012804 75015781 HERVL-int 5654 + 0 5518 8610 104 0 1 4 1 0 620 13 11 883 0 1 60 18 19 78 0 1 430 0 1 523 2 579 95 5 1966 58 0 1 83 chain 5878 chr12 133275309 + 75017496 75017564 MER61-int 3695 + 2766 2834 81568 68 chain 7214 chr12 133275309 + 75020649 75020729 HERVL-int 5654 + 5574 5654 76901 80 chain 30824 chr12 133275309 + 75020729 75021169 MLT2A1 477 + 0 477 41292 167 6 3 11 0 1 22 1 8 163 17 53 10 4 0 39 chain 23271 chr12 133275309 + 75026268 75026541 AluY 311 + 36 311 51974 95 0 2 178 chain 4660 chr12 133275309 + 75038028 75038084 L1MC1 2226 + 1984 2038 87477 8 2 0 46 chain 26359 chr12 133275309 + 75084351 75084710 THE1A 353 + 3 353 47182 76 0 1 28 1 0 94 1 0 97 13 5 49 chain 20195 chr12 133275309 + 75159028 75159278 L1PA7 6471 + 6220 6469 56146 101 3 2 146 chain 25733 chr12 133275309 + 75212470 75212755 L1PA2 6032 + 5740 6028 48119 76 0 3 209 chain 5829 chr12 133275309 + 75303894 75304121 MLT1D 503 + 255 503 81788 45 48 0 10 88 156 6 0 1 30 chain 2643 chr12 133275309 + 75307486 75307519 L1MA4 2864 + 2740 2772 102762 26 1 0 6 chain 6082 chr12 133275309 + 75308164 75308252 MER51A 677 + 182 261 80795 17 9 0 62 chain 4038 chr12 133275309 + 75323938 75324049 MER63C 923 + 336 451 91166 15 1 4 22 41 42 32 chain 215391 chr12 133275309 + 75351845 75354696 L1PA10 4194 + 1270 4150 9162 60 4 6 19 8 7 114 5 4 236 0 5 299 7 7 140 0 2 57 0 4 47 0 2 409 4 0 13 0 5 44 0 1 325 0 1 57 0 3 220 1 2 42 3 0 39 0 1 163 12 8 37 7 1 79 11 32 114 5 6 169 0 2 61 8 5 11 0 1 9 1 0 11 chain 24328 chr12 133275309 + 75381035 75381401 THE1A 353 + 0 353 50292 110 1 0 145 27 23 21 18 10 44 chain 71080 chr12 133275309 + 75412584 75413355 L1PA4 6152 + 5380 6151 23746 771 chain 27516 chr12 133275309 + 75418847 75419168 L1PA7 6471 + 6144 6464 45560 168 0 2 145 3 0 5 chain 121509 chr12 133275309 + 75427987 75429606 THE1D-int 1627 + 0 1616 15263 12 20 19 267 6 5 224 17 10 181 5 6 125 16 5 260 0 12 135 0 4 290 4 5 17 1 0 39 chain 122799 chr12 133275309 + 75441191 75442713 THE1A-int 1579 + 0 1566 15059 136 10 21 231 0 4 82 7 26 136 0 9 327 1 2 592 chain 78109 chr12 133275309 + 75444831 75445801 LTR5B 1012 + 0 994 22071 8 0 4 119 1 15 153 8 9 180 1 0 284 0 6 216 chain 21232 chr12 133275309 + 75453729 75454025 LTR56 451 + 11 315 54845 80 8 6 38 3 13 167 chain 253920 chr12 133275309 + 75617141 75620212 L1PA7 6471 + 3402 6459 8135 82 1 2 5 1 0 9 2 0 256 0 3 545 0 11 627 8 7 43 5 6 364 2 1 258 1 0 206 24 0 632 chain 28196 chr12 133275309 + 75620245 75620741 L1MA3 4352 + 3885 4328 44570 207 53 15 6 3 0 74 1 0 5 1 2 41 4 0 23 2 0 10 3 0 14 12 10 22 1 0 14 chain 115744 chr12 133275309 + 75681026 75682369 L1PA7 6471 + 5128 6468 16282 493 1 0 748 0 1 84 3 0 14 chain 46442 chr12 133275309 + 75684078 75684632 MER41A 554 + 0 554 30867 554 chain 35096 chr12 133275309 + 75686109 75686518 L1PA7 6471 + 5715 6126 37960 296 0 2 113 chain 26234 chr12 133275309 + 75686519 75686817 L1PA7 6471 + 6128 6426 47372 298 chain 224991 chr12 133275309 + 75729913 75732358 L1PA3long 6157 + 3711 6156 8891 2445 chain 25707 chr12 133275309 + 75747278 75747571 AluSp 311 + 8 304 48156 83 0 3 210 chain 67992 chr12 133275309 + 75748759 75749530 L1PA5 6144 + 5372 6144 24456 319 0 1 452 chain 12282 chr12 133275309 + 75749566 75749712 LTR8 732 + 586 732 66312 146 chain 3223 chr12 133275309 + 75794503 75794680 L1ME1 1623 + 1051 1229 97716 26 111 113 19 2 1 19 chain 62213 chr12 133275309 + 75829732 75830682 L1PREC2 3366 + 2028 2951 25811 211 2 1 455 3 0 34 0 1 8 24 21 31 21 18 42 1 0 4 3 0 13 51 39 16 2 0 29 chain 126368 chr12 133275309 + 75874605 75876612 L1PB1 5432 + 3451 5430 14498 178 14 0 7 6 20 72 2 4 230 0 1 4 1 0 17 6 9 36 7 10 172 1 0 201 0 2 215 20 14 71 1 0 91 0 1 16 0 39 13 35 5 212 17 12 10 1 0 25 1 0 4 3 2 12 2 0 3 2 0 9 3 1 43 8 7 18 1 0 42 86 67 24 1 0 22 1 0 12 1 0 14 1 0 8 1 0 4 chain 177293 chr12 133275309 + 75941005 75943401 SVA_D 2077 + 0 2077 10711 22 3 0 897 50 0 28 90 1 88 0 2 175 3 0 121 0 98 444 274 0 201 chain 4073 chr12 133275309 + 75941929 75941977 SVA_D 2077 + 958 1006 37422 48 chain 7637 chr12 133275309 + 75942005 75942095 SVA_D 2077 + 1212 1302 37422 90 chain 67143 chr12 133275309 + 75988900 75990023 L1P3 4156 + 2954 3753 24664 190 0 1 268 0 5 65 0 1 20 335 0 42 0 4 203 chain 4217 chr12 133275309 + 75996669 75996720 L1MB2 1706 + 1643 1694 90023 51 chain 3263 chr12 133275309 + 76135186 76135255 MLT1F 544 + 99 166 97350 15 15 14 25 1 0 13 chain 21176 chr12 133275309 + 76204188 76204474 L1PBa1 4058 + 1142 1420 54916 50 23 15 213 chain 7938 chr12 133275309 + 76204483 76204606 MER34C 514 + 149 275 75032 12 0 2 27 3 1 10 4 7 67 chain 3397 chr12 133275309 + 76221425 76221463 MER3 215 + 65 103 96098 38 chain 37817 chr12 133275309 + 76240375 76240928 LTR14B 630 + 41 630 36194 122 1 0 99 0 11 21 0 25 13 24 24 35 42 43 196 chain 4009 chr12 133275309 + 76241695 76241821 MLT1A0 366 + 0 108 91387 20 25 5 22 35 37 24 chain 14318 chr12 133275309 + 76248364 76248569 MER30 238 + 0 238 63170 18 1 19 70 4 22 66 3 0 43 chain 13202 chr12 133275309 + 76250076 76250229 L1PA6 6164 + 6009 6162 64774 153 chain 210818 chr12 133275309 + 76292670 76295865 HERVH-int 3825 + 795 3825 9325 347 11 11 18 21 24 41 84 69 48 0 1 77 9 0 49 0 5 101 16 17 4 1 0 100 0 1 346 44 49 136 3 2 522 17 17 20 63 62 44 10 10 58 176 14 27 1 0 136 0 1 132 0 3 117 0 1 221 1 2 63 0 2 25 0 1 106 chain 521825 chr12 133275309 + 76319626 76325448 L1PA3long 6157 + 0 5910 2190 153 0 1 372 4 0 244 1 134 344 0 1 1077 1 0 496 41 0 1843 1 0 1245 chain 25127 chr12 133275309 + 76333262 76333617 THE1A 353 + 0 353 49077 110 14 13 52 1 0 23 1 0 114 1 2 39 chain 205917 chr12 133275309 + 76362219 76364654 L1PA7 6471 + 3988 6464 9507 21 0 4 68 0 3 173 0 1 367 3 0 46 0 4 236 1 0 4 0 1 161 0 22 258 0 1 213 0 1 42 0 3 93 0 4 254 1 2 494 chain 30904 chr12 133275309 + 76498928 76499424 MLT2A1 477 + 0 477 41214 142 0 1 17 9 13 26 0 1 77 1 0 104 82 54 32 0 4 6 chain 6787 chr12 133275309 + 76551388 76551483 MER20 218 + 94 194 78362 59 3 8 33 chain 6770 chr12 133275309 + 76581415 76581512 L1MB1 2102 + 1146 1247 78412 20 3 7 74 chain 78084 chr12 133275309 + 76657743 76659087 L1PB1 5432 + 3891 4930 22077 21 0 1 19 0 1 180 311 7 41 0 1 117 12 0 12 16 14 61 5 13 249 0 1 276 0 1 24 chain 25587 chr12 133275309 + 76722495 76722862 L1M1 2793 + 2321 2684 48339 37 0 5 61 21 14 110 1 0 74 6 6 45 1 0 11 chain 94070 chr12 133275309 + 76735151 76736223 MER11C 1089 + 0 1073 19032 802 0 1 270 chain 3317 chr12 133275309 + 76802932 76802969 MER47A 366 + 115 152 96871 37 chain 34653 chr12 133275309 + 76804451 76804899 LTR71A 459 + 0 459 38251 195 10 21 243 chain 25164 chr12 133275309 + 76871496 76871788 AluYk4 311 + 8 306 49019 118 0 6 174 chain 35511 chr12 133275309 + 76872346 76872937 LTR9B 643 + 5 641 37718 62 4 6 30 0 8 56 46 85 157 44 42 137 17 15 38 chain 25075 chr12 133275309 + 76903811 76904156 THE1B 368 + 0 368 49162 44 0 15 110 1 0 29 32 42 100 1 0 28 chain 23563 chr12 133275309 + 76905966 76906344 MER57A1 433 + 29 433 51485 14 0 1 25 28 42 49 2 3 105 10 16 88 14 18 43 chain 75931 chr12 133275309 + 76933032 76933918 L1PA6 6164 + 5269 6162 22599 24 0 4 161 0 1 239 4 2 446 0 4 12 chain 22408 chr12 133275309 + 77018497 77018738 AluYk4 311 + 58 299 53263 241 chain 15156 chr12 133275309 + 77051472 77051641 L1PA5 6144 + 5969 6138 62087 169 chain 26265 chr12 133275309 + 77081804 77082245 L1PB4 2604 + 2086 2510 47326 119 2 1 121 87 71 112 chain 116238 chr12 133275309 + 77144623 77145914 L1PA4 6152 + 4056 5348 16179 1238 0 1 53 chain 7763 chr12 133275309 + 77181126 77181242 MER61-int 3695 + 2610 2726 75452 5 2 0 62 13 15 34 chain 26636 chr12 133275309 + 77215381 77215734 THE1A 353 + 0 353 46780 36 11 12 46 1 0 259 chain 127077 chr12 133275309 + 77215734 77217303 THE1A-int 1579 + 0 1574 14411 97 0 1 552 0 1 4 0 2 310 2 3 604 chain 20732 chr12 133275309 + 77230534 77230751 AluYa5 310 + 75 292 55452 217 chain 66078 chr12 133275309 + 77252841 77253921 L1MA5A 2387 + 1257 2295 24944 160 0 1 73 81 78 67 5 4 223 1 0 168 1 2 6 2 0 25 6 5 36 7 6 46 2 0 30 9 8 22 3 0 15 48 19 44 chain 450207 chr12 133275309 + 77286744 77292683 L1PA7 6471 + 836 6458 4388 132 0 3 182 0 4 53 0 4 136 3 4 115 0 3 525 7 6 73 1 2 16 8 10 180 0 1 235 0 2 4 1 0 109 22 0 60 1 0 47 4 5 113 29 13 24 18 27 159 13 17 308 317 0 421 0 2 173 13 6 82 1 2 392 1 2 30 1 3 494 1 0 4 0 1 237 1 0 364 1 0 74 3 1 5 0 2 288 0 9 458 chain 15349 chr12 133275309 + 77330857 77331142 L1PB1 5432 + 5158 5419 61850 9 2 0 52 1 0 10 8 7 41 7 6 13 12 1 30 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 15 chain 3158 chr12 133275309 + 77336120 77336157 MLT1D 503 + 30 67 98288 37 chain 17095 chr12 133275309 + 77457760 77458032 L1PA8 5853 + 5586 5853 59701 22 2 0 66 17 15 9 1 2 40 2 1 19 2 1 92 chain 516479 chr12 133275309 + 77459286 77465421 L1PA5 6144 + 5 6128 2447 116 0 14 70 7 0 209 6 5 381 0 17 10 18 1 339 9 0 403 0 3 619 1 3 212 1 0 872 1 0 395 2 1 624 0 4 48 0 2 38 0 1 775 33 11 93 1 5 511 1 0 98 0 1 242 chain 62391 chr12 133275309 + 77501343 77502055 L1PA5 6144 + 5437 6143 25778 454 1 0 244 5 0 8 chain 498758 chr12 133275309 + 77523491 77529889 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77762433 L1PA7 6471 + 5621 6465 23877 397 5 4 443 chain 96318 chr12 133275309 + 77770684 77771744 L1PA4 6152 + 4911 5972 18733 906 0 1 154 chain 9608 chr12 133275309 + 77859521 77859629 L1PA2 6032 + 5922 6030 71242 108 chain 178504 chr12 133275309 + 77902518 77904480 L1PA4 6152 + 4014 5977 10659 1639 0 1 323 chain 3212 chr12 133275309 + 77912166 77912205 MLT1C 463 + 63 103 97781 22 0 1 17 chain 123524 chr12 133275309 + 77950505 77951904 L1PA5 6144 + 4570 5970 14930 604 1 0 312 0 1 444 0 1 38 chain 10202 chr12 133275309 + 78027631 78027942 Tigger4 2445 + 64 341 70009 16 50 36 10 1 17 6 1 0 11 1 0 11 21 12 40 2 0 9 57 34 75 chain 35237 chr12 133275309 + 78031513 78031892 L1PA2 6032 + 5647 6026 37874 379 chain 192462 chr12 133275309 + 78071794 78073881 L1PA2 6032 + 2624 4708 9998 1682 1 0 207 2 0 195 chain 25221 chr12 133275309 + 78081936 78082294 THE1B 368 + 0 368 48911 40 0 5 124 1 0 16 18 24 4 0 1 16 1 0 138 chain 22948 chr12 133275309 + 78320610 78320971 THE1B 368 + 13 368 52450 34 0 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L1PA7 6471 + 4678 5245 31081 32 0 1 65 1 3 392 3 0 74 chain 38218 chr12 133275309 + 83718412 83718898 THE1B-int 1605 + 2 513 35898 428 1 26 57 chain 397469 chr12 133275309 + 83719905 83725985 HERVL-int 5654 + 0 5644 5187 9 1 0 106 1 0 296 0 1 208 1 2 33 1 0 128 4 30 48 4 14 100 0 2 60 6 10 77 1 0 122 8 0 184 0 1 51 7 27 45 0 1 140 1 0 29 6 8 68 4 5 11 18 19 34 72 72 172 25 27 58 0 3 5 3 0 262 4 5 71 1 0 243 7 8 206 0 26 17 16 1 20 0 1 132 7 16 220 0 3 299 1 6 5 5 0 29 0 12 87 1 3 86 0 2 335 3 17 12 40 6 205 1 0 38 0 4 7 4 9 45 0 1 202 0 1 67 0 20 179 1 2 106 19 8 134 0 3 23 0 1 63 557 14 113 3 6 57 chain 30572 chr12 133275309 + 83725995 83726439 MLT2A1 477 + 0 475 41508 81 1 2 4 1 0 39 0 1 41 7 4 65 6 7 141 6 38 52 chain 144667 chr12 133275309 + 83741455 83743330 L1PA8 5853 + 1793 5847 12714 173 1 3 57 8 4 50 0 3 191 0 4 38 0 1 103 0 2162 31 0 4 439 3 6 34 0 6 37 0 3 132 0 1 289 1 0 44 2 0 74 1 0 58 2 1 19 2 1 86 chain 3746 chr12 133275309 + 83821858 83821902 U6 107 + 14 58 93273 44 chain 35091 chr12 133275309 + 83863000 83863410 L1PA5 6144 + 5734 6144 37962 268 1 0 24 0 1 117 chain 313978 chr12 133275309 + 83870971 83874655 L1P1 4361 + 1 3691 6532 573 1 0 125 6 0 395 2 3 127 0 1 174 4 13 1580 0 1 683 1 2 13 chain 44291 chr12 133275309 + 83894429 83894924 L1PA3long 6157 + 5664 6152 31957 336 7 0 152 chain 68662 chr12 133275309 + 83902152 83902895 L1PA3long 6157 + 5415 6157 24296 227 1 0 515 chain 39485 chr12 133275309 + 83902901 83903384 L1P2 5180 + 3295 3781 35023 162 0 1 78 0 1 65 0 1 178 chain 3635 chr12 133275309 + 83949744 83949784 LTR33B 472 + 379 419 94140 40 chain 47426 chr12 133275309 + 83976220 83976838 L1PA8 5853 + 5242 5853 30496 322 1 0 46 2 0 67 24 22 41 2 1 19 1 0 93 chain 381926 chr12 133275309 + 84020456 84024812 L1PA4 6152 + 1793 6152 5452 970 0 1 354 0 1 1545 0 1 289 4 0 344 0 4 850 chain 171867 chr12 133275309 + 84024828 84027002 L1PA8A 6298 + 4123 6291 11004 34 0 1 86 0 1 428 0 2 659 19 0 147 7 10 77 0 2 576 0 4 141 chain 33203 chr12 133275309 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184 5 6 75 1 0 6 chain 72969 chr12 133275309 + 84197119 84198358 L1PA7 6471 + 5550 6465 23321 77 0 3 226 0 3 288 327 0 312 3 0 6 chain 11951 chr12 133275309 + 84239392 84239592 HSMAR2 1300 + 1031 1233 66920 13 43 45 144 chain 52510 chr12 133275309 + 84310488 84311067 L1PA3long 6157 + 5578 6157 28731 579 chain 20085 chr12 133275309 + 84334772 84335121 THE1D 372 + 28 372 56275 25 9 0 13 13 14 86 32 34 23 1 0 60 6 8 81 chain 7248 chr12 133275309 + 84359140 84359232 LTR18A 364 + 262 353 76820 4 1 0 87 chain 19360 chr12 133275309 + 84368077 84368349 L1PA8 5853 + 5586 5852 57172 24 4 2 66 2 1 14 1 0 47 2 1 19 8 7 85 chain 164722 chr12 133275309 + 84372282 84374137 L1P1 4361 + 2250 4105 11432 921 1 0 65 0 1 868 chain 40933 chr12 133275309 + 84377661 84378119 L1PA5 6144 + 5686 6144 34007 458 chain 25521 chr12 133275309 + 84476927 84477342 L1PA8 5853 + 5442 5850 48450 79 1 0 41 1 0 46 2 0 70 38 37 25 2 1 13 0 7 6 13 8 5 3 0 70 chain 41353 chr12 133275309 + 84483678 84484225 MLT2A2 560 + 0 560 33760 190 16 18 198 0 11 143 chain 80548 chr12 133275309 + 84575378 84579110 L1PA10 4194 + 853 4122 21524 415 0 1 38 1 2 194 0 1 96 2566 2105 178 6 0 35 10 8 46 1 6 103 0 1 34 3 0 6 chain 138536 chr12 133275309 + 84591853 84593378 L1PA3long 6157 + 4632 6157 13219 1525 chain 31533 chr12 133275309 + 84699228 84699696 MLT2A1 477 + 4 475 40716 50 3 0 88 0 1 25 1 5 152 1 0 24 1 2 29 0 4 14 2 0 5 13 0 8 4 0 13 0 16 35 chain 26749 chr12 133275309 + 84761837 84762118 AluYa5 310 + 20 301 46615 281 chain 4441 chr12 133275309 + 84762419 84762562 MER3 215 + 0 153 88648 29 76 86 38 chain 37322 chr12 133275309 + 84765706 84766176 MER4A1 472 + 2 472 36534 470 chain 36043 chr12 133275309 + 84793971 84794413 LTR17 781 + 255 696 37388 72 1 0 369 chain 199971 chr12 133275309 + 84794507 84796896 HERV17-int 4347 + 279 4343 9721 110 5 6 24 1 0 197 0 1 39 0 1 64 1 0 516 0 1 822 0 1672 182 0 1 428 chain 25821 chr12 133275309 + 84798346 84798674 LTR17 781 + 0 326 47988 57 1 0 122 1 0 147 chain 7046 chr12 133275309 + 84819256 84819432 L1MA5A 2387 + 2155 2286 77456 25 2 0 37 3 0 13 32 6 7 7 0 5 0 1 30 8 0 7 chain 4569 chr12 133275309 + 84889535 84889592 MER39 703 + 521 581 87971 5 0 3 52 chain 3138 chr12 133275309 + 84910954 84910987 LTR46 455 + 422 455 98480 33 chain 26578 chr12 133275309 + 85002700 85003044 THE1A 353 + 0 341 46863 108 3 2 92 2 0 139 chain 49392 chr12 133275309 + 85046594 85047150 L1PA5 6144 + 5576 6132 29802 556 chain 34670 chr12 133275309 + 85176377 85176755 L1PA2 6032 + 5654 6032 38238 378 chain 424796 chr12 133275309 + 85193158 85197837 L1PA2 6032 + 1350 6032 4816 1504 0 1 283 1 0 77 0 1 344 2 1 164 2 1 2138 8 0 5 0 8 132 0 4 19 chain 59889 chr12 133275309 + 85224120 85224876 L1PA7 6471 + 5679 6451 26406 39 0 3 91 0 2 88 1 12 134 5 6 267 1 0 130 chain 67096 chr12 133275309 + 85227551 85228304 L1PA5 6144 + 4512 5265 24683 753 chain 11818 chr12 133275309 + 85382386 85382543 L1PA8 5853 + 5697 5853 67172 13 0 1 29 2 1 19 1 0 93 chain 47674 chr12 133275309 + 85433810 85434339 L1PA4 6152 + 4379 4908 30409 529 chain 23735 chr12 133275309 + 85509088 85509505 LTR3A 482 + 3 420 51221 22 1 0 79 0 1 4 0 1 34 3 2 37 17 28 17 55 44 108 5 6 19 1 0 15 chain 3358 chr12 133275309 + 85555872 85555951 MADE1 96 - 0 96 96497 33 22 39 24 chain 529046 chr12 133275309 + 85785439 85791484 L1PA5 6144 + 19 6076 1876 1210 0 1 1424 0 1 4 2 0 118 1 5 342 1 0 551 2 0 329 0 1 251 0 1 840 1 0 4 0 1 9 0 1 359 0 1 220 18 25 359 chain 8853 chr12 133275309 + 85887635 85887868 MER47A 366 + 77 312 72857 43 37 36 48 4 5 20 37 44 6 5 0 33 chain 88992 chr12 133275309 + 85908806 85910006 L1PA8 5853 + 4700 5852 19858 387 1 0 248 8 4 102 0 6 3 38 0 114 1 0 44 2 0 14 1 3 57 1 0 6 1 0 54 1 0 18 2 1 35 6 0 56 chain 24628 chr12 133275309 + 85913197 85913484 AluSp 311 + 8 298 49829 83 0 3 204 chain 14104 chr12 133275309 + 85913484 85913711 L1M1 2793 + 1533 1752 63445 56 9 11 67 1 0 5 7 0 72 2 0 8 chain 4339 chr12 133275309 + 85913753 85913809 MER4D 903 + 837 895 89237 41 0 2 15 chain 38752 chr12 133275309 + 85925383 85925839 LTR2 463 + 2 463 35524 59 1 5 302 0 1 94 chain 191138 chr12 133275309 + 85937456 85939889 HERVL-int 5654 + 0 5649 10061 44 1 0 4 0 1 134 1 0 4 0 1 172 13 2719 315 12 13 47 7 23 1304 0 488 163 0 5 212 chain 85803 chr12 133275309 + 86020792 86021749 L1PA4 6152 + 5196 6152 20489 56 1 0 900 chain 512362 chr12 133275309 + 86061070 86067714 L1PA7 6471 + 8 6467 2650 106 0 1 205 1 2 90 14 0 477 0 1 4 10 9 698 0 3 19 2 4 94 16 16 199 15 14 191 0 1 390 26 0 106 1 2 139 3 4 374 164 0 174 7 8 51 1 0 94 1 2 63 7 11 52 1 0 481 0 2 392 0 1 711 1 0 197 0 1 225 6 8 501 0 1 335 chain 22221 chr12 133275309 + 86073648 86073944 THE1A-int 1579 + 1285 1579 53522 30 4 3 52 5 4 205 chain 3444 chr12 133275309 + 86074297 86074335 MLT2A1 477 + 343 381 95702 38 chain 9811 chr12 133275309 + 86085580 86085700 L1PA7 6471 + 5501 5621 70799 120 chain 5925 chr12 133275309 + 86085701 86085790 L1PA7 6471 + 5621 5708 81378 74 0 2 5 4 0 6 chain 61007 chr12 133275309 + 86085797 86086543 L1PA7 6471 + 5717 6465 26106 419 0 1 107 0 2 59 5 6 113 1 2 31 3 0 8 chain 3038 chr12 133275309 + 86094995 86095027 MLT1J 494 + 21 53 99429 32 chain 127762 chr12 133275309 + 86120285 86121800 L1P2 5180 + 507 2045 14315 8 1 0 272 1 0 5 1 0 141 0 25 198 0 3 87 2 1 715 1 0 83 chain 22532 chr12 133275309 + 86140334 86140612 L1PA7 6471 + 6147 6414 53067 91 13 2 174 chain 3123 chr12 133275309 + 86140619 86140663 L1PA7 6471 + 6425 6469 98613 44 chain 20926 chr12 133275309 + 86153503 86153890 THE1D 372 + 0 372 55225 52 34 5 15 19 30 63 20 22 5 0 1 39 1 0 98 8 9 33 chain 123078 chr12 133275309 + 86179366 86180933 THE1A-int 1579 + 0 1567 15010 18 7 9 150 0 6 15 0 4 57 14 0 136 0 1 280 0 1 301 12 13 52 2 0 373 0 1 150 chain 24430 chr12 133275309 + 86180944 86181299 THE1A 353 + 0 353 50128 110 1 0 47 26 25 4 0 1 11 1 0 155 chain 5454 chr12 133275309 + 86190889 86191011 MLT2C2 476 + 201 279 83440 52 17 0 4 27 0 22 chain 27981 chr12 133275309 + 86212606 86212920 AluYa5 310 + 0 310 44899 123 7 3 184 chain 16737 chr12 133275309 + 86239845 86240023 L1HS 6032 + 5838 6016 60113 178 chain 62484 chr12 133275309 + 86321668 86322379 L1PA5 6144 + 5429 6144 25756 700 0 4 11 chain 515307 chr12 133275309 + 86356355 86362494 L1PA5 6144 + 0 6141 2502 135 62 76 62 1 0 747 0 1 7 1 2 4 1 0 135 9 0 757 3 5 386 0 1 707 0 1 131 5 1 232 0 1 285 5 0 951 0 1 621 0 1 568 1 0 323 chain 40799 chr12 133275309 + 86367080 86367998 LTR19B 566 + 0 566 34095 111 0 4 107 0 1 18 0 1 54 7 0 37 0 4 103 356 0 10 6 7 109 chain 23186 chr12 133275309 + 86383587 86383889 THE1B-int 1605 + 1296 1600 52099 13 0 2 10 1 2 214 1 0 63 chain 8179 chr12 133275309 + 86409651 86409756 MSTA 426 + 0 104 74466 40 1 0 64 chain 38796 chr12 133275309 + 86474084 86474531 L1PA4 6152 + 5704 6152 35501 278 5 6 164 chain 42239 chr12 133275309 + 86476178 86476983 L1PA16 3655 + 2832 3619 33224 70 1 0 26 9 12 109 25 34 121 1 0 37 2 0 18 11 13 14 22 20 185 1 0 4 9 11 24 88 66 7 5 0 16 chain 361172 chr12 133275309 + 86489779 86493794 L1PA3long 6157 + 1348 6144 5791 896 0 12 70 1 0 339 0 769 1321 0 1 160 1 0 317 0 1 910 chain 91312 chr12 133275309 + 86510278 86511336 L1P2 5180 + 1930 2989 19450 984 0 1 74 chain 32343 chr12 133275309 + 86566138 86566569 MLT2A1 477 + 0 429 40080 171 12 8 24 0 1 8 7 6 165 0 2 44 chain 146289 chr12 133275309 + 86588200 86589822 L1PA3long 6157 + 2290 3912 12590 400 0 1 1042 1 0 179 chain 3938 chr12 133275309 + 86598101 86598156 Tigger3a 397 + 142 201 91852 34 1 5 20 chain 3345 chr12 133275309 + 86618310 86618360 L1MA4A 3247 + 3066 3114 96646 21 1 0 20 1 0 7 chain 506822 chr12 133275309 + 86626749 86632913 L1PA6 6164 + 0 6161 2902 315 91 9 8 0 81 94 4 3 47 0 1 124 0 1 59 0 1 702 1 0 174 0 1 526 0 1 85 9 0 101 1 2 88 0 1 77 0 1 682 6 8 502 0 1 368 2 1 1727 0 1 5 2 0 364 chain 12497 chr12 133275309 + 86635981 86636129 Tigger3a 397 + 141 289 65990 148 chain 3160 chr12 133275309 + 86670925 86670965 MER75 514 + 131 171 98277 40 chain 26766 chr12 133275309 + 86706794 86707148 THE1B 368 + 0 366 46591 44 0 15 110 8 7 18 2 0 172 chain 25306 chr12 133275309 + 86709059 86709392 THE1B 368 + 9 368 48774 35 4 29 126 1 2 167 chain 18243 chr12 133275309 + 86710547 86710821 L1PB2 3958 + 3568 3838 58421 22 1 2 22 9 6 56 6 5 73 2 0 21 1 0 7 0 2 54 chain 15318 chr12 133275309 + 86714378 86714719 THE1B 368 + 0 345 61886 104 99 92 13 1 5 10 10 18 64 7 6 33 chain 33713 chr12 133275309 + 86753109 86753587 MER9a1 513 + 12 513 38912 187 57 79 211 6 7 17 chain 27581 chr12 133275309 + 86757027 86757364 L1PA7 6471 + 6122 6458 45478 15 2 1 320 chain 550038 chr12 133275309 + 86763881 86770022 L1PA3long 6157 + 6 6157 745 145 3 4 1797 1 0 1314 0 4 201 0 1 86 2 0 1768 6 7 159 0 3 509 3 6 147 chain 5061 chr12 133275309 + 86772717 86772904 MLT1B-int 1170 + 911 1092 85348 21 63 65 17 20 17 46 9 4 11 chain 173046 chr12 133275309 + 86802544 86804429 L1PA2 6032 + 4147 6032 10949 1885 chain 23533 chr12 133275309 + 86806715 86806997 L1PA5 6144 + 5843 6125 51532 154 1 0 18 0 1 109 chain 49736 chr12 133275309 + 86844303 86844846 L1PA3long 6157 + 2632 3176 29665 326 0 1 217 chain 270695 chr12 133275309 + 86844846 86847823 L1PA3long 6157 + 3177 6155 7692 1622 0 1 1355 chain 18684 chr12 133275309 + 86913084 86913461 THE1D 372 + 0 343 57916 75 19 0 48 6 0 4 8 0 4 2 0 37 78 79 96 chain 222148 chr12 133275309 + 86917616 86920216 L1PA4 6152 + 2744 5354 8979 433 1 2 203 1 0 19 6 9 475 0 1 8 0 1 456 0 4 744 0 1 254 chain 39320 chr12 133275309 + 86938681 86939132 LTR7 482 + 0 482 35137 237 1 32 213 chain 320295 chr12 133275309 + 86939134 86943052 HERVH-int 3825 + 0 3824 6402 168 0 2 360 65 1 14 0 71 15 3 0 7 21 0 19 24 0 22 44 0 41 21 0 9 2 1 49 1 0 130 1 0 320 16 1 455 4 31 534 0 1 1573 chain 36404 chr12 133275309 + 86944314 86944742 LTR7 482 + 0 469 37139 45 2 12 181 0 31 200 chain 427426 chr12 133275309 + 86970395 86975364 L1PA4 6152 + 2 4995 4783 521 3 4 117 0 1 231 1 0 368 10 2 650 4 0 71 1 5 1313 2 1 217 4 5 946 0 1 210 0 25 49 0 5 251 chain 17214 chr12 133275309 + 86984818 86985269 L1PB1 5432 + 5008 5390 59562 86 8 7 13 49 0 24 27 21 9 2 0 17 3 0 35 2 1 11 5 4 45 1 0 15 1 0 4 2 0 11 9 0 9 2 12 14 27 24 20 chain 33929 chr12 133275309 + 87000852 87001329 MER4-int 2692 + 15 487 38766 21 2 0 4 0 1 58 2 0 16 9 8 190 9 5 104 0 3 62 chain 5804 chr12 133275309 + 87052954 87053082 L1MC1 2226 + 1989 2103 81898 6 2 0 15 0 1 36 27 19 17 5 0 20 chain 31696 chr12 133275309 + 87074889 87075346 LTR3B_ 500 + 0 457 40580 78 1 0 72 0 1 4 14 9 134 4 5 39 7 9 51 8 10 45 chain 139611 chr12 133275309 + 87077108 87078638 L1PA3long 6157 + 4628 6157 13124 1269 1 0 260 chain 26177 chr12 133275309 + 87083589 87083932 THE1B-int 1605 + 1239 1592 47463 63 0 13 257 3 0 20 chain 21238 chr12 133275309 + 87083944 87084310 THE1B 368 + 0 368 54833 44 10 39 7 14 0 17 3 4 61 11 10 18 14 0 17 1 3 73 1 0 75 chain 537976 chr12 133275309 + 87098407 87104423 L1PA3long 6157 + 4 6144 1453 148 0 1 623 0 128 1342 0 1 2002 1 2 685 14 7 1201 chain 483959 chr12 133275309 + 87171407 87177562 L1PA5 6144 + 0 6136 3555 135 0 14 65 1 0 35 54 41 659 25 0 216 17 8 499 0 1 36 1 0 376 7 8 12 1 2 383 8 10 175 0 1 54 18 6 319 0 5 104 2 0 202 6 5 503 1 2 5 1 0 84 1 0 10 9 12 156 0 4 96 9 12 83 3 7 105 0 3 236 0 7 114 3 4 480 1 0 128 0 1 566 0 1 117 5 0 29 chain 237178 chr12 133275309 + 87191778 87194334 L1PA2 6032 + 3476 6031 8544 2542 1 0 13 chain 3879 chr12 133275309 + 87215888 87215935 MER53 195 + 15 62 92295 47 chain 83576 chr12 133275309 + 87295171 87296094 L1PA3long 6157 + 4222 5145 20895 923 chain 64318 chr12 133275309 + 87330032 87330784 LTR12C 1709 + 0 1700 25346 503 1 949 248 chain 526027 chr12 133275309 + 87393951 87400055 L1PA5 6144 + 3 6138 1997 720 1 2 157 0 17 266 0 1 248 1 6 478 1 0 41 1 0 1224 0 1 1258 0 1 4 1 0 947 5 6 6 0 3 255 5 6 123 1 3 218 0 1 143 chain 5102 chr12 133275309 + 87429245 87429307 MER57B1 401 + 0 62 85156 62 chain 64363 chr12 133275309 + 87526878 87527639 L1PA7 6471 + 5647 6437 25337 496 0 29 265 chain 505349 chr12 133275309 + 87530986 87537084 L1PA5 6144 + 0 6144 2951 119 1 15 260 0 4 39 0 6 257 1 2 45 0 9 169 6 7 38 0 14 150 4 1 28 15 6 110 0 1 532 5 6 376 0 2 19 0 2 204 0 3 15 0 1 263 2 1 233 2 1 129 2 1 102 1 0 1432 3 0 364 0 1 129 1 7 517 7 7 264 2 1 252 chain 364193 chr12 133275309 + 87543527 87547609 L1PA3long 6157 + 2056 6155 5745 633 0 1 236 2 0 1598 1 18 1282 0 1 330 chain 24488 chr12 133275309 + 87548209 87548488 L1PA4 6152 + 5868 6152 50049 273 0 5 6 chain 416582 chr12 133275309 + 87557037 87562372 L1PA8 5853 + 549 5853 4928 47 0 4 33 9 10 103 1 2 30 0 1 370 0 1 4 7 6 254 1 2 203 0 1 286 0 2 108 5 2 253 0 4 163 0 9 506 0 1 62 0 1 131 11 12 54 9 0 183 3 0 356 0 1 50 2 0 54 0 1 4 2 1 177 3 0 9 0 3 136 0 2 24 1 0 454 0 1 82 38 0 3 3 0 252 0 2 75 0 2 471 6 5 47 2 0 68 3 2 13 1 0 48 2 1 19 1 0 93 chain 19855 chr12 133275309 + 87563558 87563794 L1PA5 6144 + 5139 5379 56605 143 1 0 12 0 5 80 chain 72423 chr12 133275309 + 87583794 87584585 L1PA2 6032 + 3737 4535 23444 383 0 3 102 0 4 306 chain 108769 chr12 133275309 + 87592597 87593815 L1PA3long 6157 + 4930 6150 17210 1071 0 2 147 chain 205183 chr12 133275309 + 87631511 87633787 L1PA3long 6157 + 1989 4264 9529 1199 0 1 506 1 0 189 2 1 379 chain 9847 chr12 133275309 + 87658964 87659101 MSTA 426 + 274 426 70726 25 4 19 108 chain 244095 chr12 133275309 + 87680999 87683689 L1PA3long 6157 + 2691 5382 8373 930 0 1 1760 chain 153786 chr12 133275309 + 87704840 87706779 L1PA7 6471 + 4482 6427 12120 15 0 8 118 1 6 40 1 9 145 1 0 6 0 1 72 0 1 118 18 0 550 0 1 48 2 1 81 2 0 6 2 4 229 0 1 188 0 1 296 chain 66546 chr12 133275309 + 87749420 87750131 L1HS 6032 + 3444 4155 24805 711 chain 37421 chr12 133275309 + 87752268 87752677 L1PA3long 6157 + 3906 4316 36466 40 0 1 369 chain 131812 chr12 133275309 + 87837744 87839406 L1PA7 6471 + 4829 6467 13844 69 0 1 50 5 0 305 0 1 281 0 1 165 4 1 306 1 2 191 0 1 104 2 0 5 0 2 109 18 1 37 4 0 6 chain 164619 chr12 133275309 + 87875033 87877007 L1PA7 6471 + 4487 6470 11445 187 0 2 947 0 1 74 0 2 109 0 3 198 19 20 440 chain 25178 chr12 133275309 + 87896225 87896583 THE1B 368 + 0 368 48992 44 0 15 72 1 2 39 10 9 13 4 0 100 1 0 74 chain 11165 chr12 133275309 + 87934787 87935195 L1MA6 2487 + 2108 2400 68315 104 10 1 14 220 116 35 3 0 22 chain 23414 chr12 133275309 + 87936165 87936546 THE1D-int 1627 + 15 398 51737 221 72 73 71 1 2 16 chain 337763 chr12 133275309 + 87945054 87949346 L1PA6 6164 + 2174 6162 6114 343 0 1 4 1 0 316 1 0 79 297 0 262 7 0 12 0 1 487 0 1 806 1 3 188 1 3 311 5 5 407 4 0 755 1 0 4 chain 14877 chr12 133275309 + 87949351 87949642 L1PA11 4918 + 4309 4578 62415 5 0 1 13 3 0 65 2 1 13 2 0 68 2 0 10 5 6 17 44 31 15 1 0 13 2 0 11 chain 30571 chr12 133275309 + 88004246 88004753 L1PA15 4387 + 3866 4366 41510 22 6 4 40 1 0 81 1 0 58 1 0 33 2 1 25 1 0 38 2 18 22 4 0 8 2 1 47 9 6 43 2 0 12 12 7 20 4 3 11 chain 26614 chr12 133275309 + 88017138 88017510 THE1B 368 + 16 368 46809 33 1 0 5 0 1 117 4 3 17 2 0 160 17 0 16 chain 5029 chr12 133275309 + 88078449 88078622 L1MC1 2226 + 1998 2140 85522 49 43 30 6 5 0 15 12 10 13 1 0 8 9 0 7 1 0 4 chain 23844 chr12 133275309 + 88097200 88097575 THE1C 375 + 0 375 51032 120 19 23 37 0 3 14 23 17 39 6 5 117 chain 13901 chr12 133275309 + 88203947 88204220 THE1B 368 + 84 368 63733 72 69 85 6 7 0 38 1 3 80 chain 116932 chr12 133275309 + 88204220 88205785 THE1B-int 1605 + 0 1595 16067 113 0 3 300 24 49 117 0 2 71 23 21 264 0 2 185 22 22 446 chain 22895 chr12 133275309 + 88205794 88206137 THE1B 368 + 0 368 52521 44 0 15 139 35 45 25 1 0 4 0 1 95 chain 185732 chr12 133275309 + 88228031 88231546 HERVH48-int 3304 + 117 3244 10314 9 2 0 7 7 3 7 2 0 14 42 31 11 2 0 27 1 0 31 13 0 9 35 26 4 1 0 66 6 2 8 2 1 31 2 1 36 1 0 17 0 1 6 18 5 82 1 0 7 3 1 54 32 2 10 20 0 3 1 0 17 4 0 17 1 0 4 3 1 65 2 0 73 1 0 70 25 17 117 4 1 11 1 0 21 1 0 12 2 0 33 3 0 3 2 0 22 2 0 4 1 0 16 1 0 22 2 0 22 1 0 18 2 0 6 1 0 5 10 4 69 0 1 52 1 0 12 1 0 8 1 0 218 1 0 89 2 1 73 1 2 91 0 1 110 0 1 10 1 0 236 20 19 11 2 0 68 1 0 11 2 1 47 1 0 93 10 12 124 1 0 4 1 0 18 1 0 41 8 6 11 4 2 23 14 12 12 2 0 6 1 0 4 227 177 9 1 0 19 2 0 10 1 0 40 11 8 52 73 59 72 199 64 25 chain 55100 chr12 133275309 + 88241440 88242066 L1PA5 6144 + 3299 3926 27839 391 0 1 235 chain 4987 chr12 133275309 + 88242115 88242195 MADE1 96 - 0 96 85714 36 7 23 37 chain 54390 chr12 133275309 + 88280755 88281667 L1PREC2 3366 + 2169 3034 28087 70 1 0 507 0 1 5 2 0 45 12 11 35 57 45 11 12 7 11 7 4 12 1 0 18 4 1 11 39 21 22 6 4 24 chain 80581 chr12 133275309 + 88348524 88349433 L1PA6 6164 + 3762 4670 21517 887 1 0 21 chain 25574 chr12 133275309 + 88358796 88359175 THE1C 375 + 0 375 48362 15 2 0 94 4 5 10 9 8 47 0 4 6 14 8 178 chain 7302 chr12 133275309 + 88368476 88368562 HERVH-int 3825 + 0 89 76661 56 0 3 30 chain 3091 chr12 133275309 + 88379466 88379503 MSTA 426 + 389 426 98859 37 chain 377996 chr12 133275309 + 88402508 88406721 L1PA4 6152 + 1926 6143 5517 128 0 1 2164 0 1 1846 0 2 75 chain 6921 chr12 133275309 + 88430444 88430541 HY1 111 + 3 103 77875 38 0 2 39 4 5 16 chain 513052 chr12 133275309 + 88436676 88443132 L1PA7 6471 + 3 6469 2620 44 7 6 312 7 8 39 0 1 50 1 0 420 0 1 90 7 8 228 0 4 170 2 0 118 5 8 631 0 1 488 7 1 7 0 5 34 0 1 336 3 4 78 0 4 510 0 9 44 3 6 333 12 8 28 18 16 123 3 0 345 0 2 147 0 4 274 1 0 157 8 6 99 1 2 78 0 1 7 13 0 326 0 3 271 25 26 534 2 0 10 chain 210121 chr12 133275309 + 88475882 88478381 L1PA7 6471 + 3952 6466 9348 629 0 3 10 0 1 68 0 8 652 3 11 86 4 5 196 6 0 515 0 1 250 1 0 79 chain 5540 chr12 133275309 + 88532052 88532140 MER2B 336 + 200 289 83079 50 9 10 29 chain 3089 chr12 133275309 + 88537688 88537722 Tigger4a 237 + 184 218 98880 34 chain 5758 chr12 133275309 + 88558980 88559057 L1PB1 5432 + 5346 5420 82092 24 1 0 21 1 0 13 1 0 16 chain 6465 chr12 133275309 + 88581705 88581783 U1 164 + 68 151 79462 61 0 5 17 chain 25249 chr12 133275309 + 88589000 88589407 L1PB2 3958 + 3412 3838 48872 27 2 0 12 1 0 94 2 0 21 11 13 12 1 4 22 1 0 62 1 0 35 17 39 21 2 1 63 chain 26582 chr12 133275309 + 88597723 88598077 THE1A 353 + 0 353 46853 109 2 1 75 0 3 26 3 0 139 chain 5059 chr12 133275309 + 88602684 88602776 MLT1A0 366 + 37 131 85362 45 21 23 26 chain 417457 chr12 133275309 + 88605054 88610568 L1PA7 6471 + 1027 6467 4916 536 1 0 359 0 8 21 0 1 181 13 14 290 0 1 5 9 8 181 16 0 798 0 3 90 1 0 17 0 1 141 3 4 239 0 1 30 0 240 158 0 4 361 11 10 42 0 1 26 0 1 156 2 0 666 4 0 18 319 7 37 0 4 23 1 0 216 0 1 26 0 1 116 0 1 209 1 0 181 4 0 6 chain 104061 chr12 133275309 + 88621728 88622849 L1PA2 6032 + 4898 6019 17813 1121 chain 530000 chr12 133275309 + 88667156 88673604 L1PA7 6471 + 0 6469 1824 5 0 1 50 2 0 279 0 2 75 1 0 995 8 11 86 0 3 449 8 10 69 1 0 838 0 1 114 0 1 308 4 5 26 0 1 174 1 0 78 2 0 116 0 1 56 1 2 396 7 8 194 0 4 361 11 10 69 0 1 156 2 1 646 0 1 11 0 3 92 0 1 318 0 2 439 chain 27948 chr12 133275309 + 88809521 88809839 L1PA7 6471 + 5229 5548 44951 241 0 1 77 chain 74533 chr12 133275309 + 88809840 88810751 L1PA7 6471 + 5548 6461 22950 74 3 0 77 0 3 429 0 1 176 2 3 150 chain 164594 chr12 133275309 + 88828736 88830699 L1PA5 6144 + 4170 6137 11447 174 0 4 912 4 4 356 0 1 4 2 1 511 chain 539730 chr12 133275309 + 88846992 88853000 L1PA3long 6157 + 0 6152 1355 152 0 1 102 0 1 225 1 2 293 0 128 1785 0 1 487 1 0 55 0 4 400 0 3 7 1 0 412 0 1 301 0 4 149 0 2 1637 chain 90599 chr12 133275309 + 88939293 88940319 L1P1 4361 + 3304 4328 19578 846 1 0 155 2 0 5 0 1 17 chain 7759 chr12 133275309 + 88941174 88941349 L1PB1 5432 + 5267 5422 75465 13 1 0 16 27 16 14 3 1 5 1 0 14 2 0 24 1 0 22 3 2 10 1 0 18 chain 3213 chr12 133275309 + 88948868 88948946 MADE1 96 - 0 96 97772 24 16 34 38 chain 106419 chr12 133275309 + 88949006 88950270 L1PA6 6164 + 4862 6156 17505 360 0 5 176 0 4 27 5 0 303 0 2 201 0 24 192 chain 13057 chr12 133275309 + 89049994 89050135 AluYb8 318 + 170 311 65013 141 chain 29374 chr12 133275309 + 89090568 89090939 THE1C-int 1605 + 0 440 42779 14 0 1 79 2 1 15 0 54 74 0 6 51 0 3 29 0 6 107 chain 10855 chr12 133275309 + 89111243 89111376 Tigger3a 397 + 143 277 68768 59 0 1 74 chain 13380 chr12 133275309 + 89137573 89137852 L1PB1 5432 + 5170 5423 64494 50 3 2 14 1 0 45 1 0 16 50 35 14 2 0 24 1 0 19 11 8 7 1 0 15 1 0 4 chain 166955 chr12 133275309 + 89148091 89150043 L1PA6 6164 + 4215 6162 11273 99 2 1 334 3 2 1502 3 0 9 chain 23311 chr12 133275309 + 89150465 89150777 L1PB3 3668 + 3097 3407 51915 56 1 0 4 0 1 133 1 0 97 4 3 16 chain 12042 chr12 133275309 + 89155134 89155289 Tigger1 2417 + 1121 1278 66777 17 0 1 81 0 1 57 chain 18559 chr12 133275309 + 89249176 89249466 L1PA16 3655 + 3360 3624 58039 213 7 4 13 24 6 7 5 0 21 chain 23776 chr12 133275309 + 89294299 89294596 AluSp 311 + 0 296 51151 30 6 5 261 chain 2947 chr12 133275309 + 89296493 89296524 U2 167 + 0 31 100413 31 chain 2847 chr12 133275309 + 89305200 89305230 U2 167 + 1 31 101254 30 chain 49796 chr12 133275309 + 89409536 89410142 L1P3 4156 + 3536 4139 29638 566 16 13 24 chain 524228 chr12 133275309 + 89440653 89446709 L1PA5 6144 + 0 6094 2080 120 0 14 59 7 11 965 9 0 93 9 21 100 0 1 31 0 5 504 0 1 189 0 1 139 0 1 1267 5 4 1098 1 0 4 0 1 668 0 4 412 0 1 96 0 1 182 4 5 78 0 2 16 chain 6446 chr12 133275309 + 89499220 89499350 L1PA16 3655 + 3459 3587 79531 57 33 34 28 3 0 9 chain 126483 chr12 133275309 + 89503110 89504613 SVA_C 1631 + 29 1623 14485 429 0 76 316 99 112 8 0 1 32 0 1 619 chain 2484 chr12 133275309 + 89503855 89503891 SVA_C 1631 + 810 846 65250 36 chain 2779 chr12 133275309 + 89503924 89503954 SVA_C 1631 + 450 480 101769 30 chain 15015 chr12 133275309 + 89506783 89506956 LTR30 714 + 1 174 62250 173 chain 4169 chr12 133275309 + 89513832 89513881 MER1B 344 + 290 339 90324 49 chain 3046 chr12 133275309 + 89610591 89610718 MER5A 189 + 7 141 99364 16 18 23 19 52 54 22 chain 17839 chr12 133275309 + 89667714 89667934 L1P4 1494 + 615 835 58839 220 chain 26581 chr12 133275309 + 89716671 89717049 THE1C 375 + 0 375 46855 179 0 3 14 0 3 5 25 17 129 1 0 25 chain 71968 chr12 133275309 + 89725206 89726211 L1PA13 3608 + 2416 3422 23547 186 1 6 41 0 1 54 0 1 82 8 9 120 0 3 209 1 0 82 3 0 57 8 6 60 9 8 49 1 0 5 3 1 26 chain 46431 chr12 133275309 + 89727808 89728672 L1PA15 4387 + 3438 4292 30869 101 7 6 267 2 0 18 11 7 23 62 66 5 1 0 36 0 1 4 78 79 53 1 0 26 1 0 25 1 2 28 8 7 15 4 0 9 2 1 53 1 0 22 chain 10451 chr12 133275309 + 89734515 89734686 MLT1H1 527 + 327 520 69519 17 30 52 124 chain 7857 chr12 133275309 + 89743662 89743870 L1MA3 4352 + 4147 4352 75236 33 1 0 18 14 23 23 17 15 23 1 0 6 1 0 19 8 7 12 10 4 22 chain 3444 chr12 133275309 + 89754201 89754239 L1MA6 2487 + 2338 2376 95698 38 chain 3714 chr12 133275309 + 89755404 89755470 L1MB3 1562 + 1442 1509 93505 14 11 12 41 chain 44596 chr12 133275309 + 89764198 89764716 L1PA6 6164 + 5635 6159 31785 497 0 8 14 2 0 5 chain 18279 chr12 133275309 + 89822601 89822833 L1PA16 3655 + 3364 3593 58387 214 4 1 14 chain 10470 chr12 133275309 + 89827129 89827343 L1PB1 5432 + 5236 5427 69464 44 1 0 12 17 6 10 1 0 18 10 7 13 2 0 24 1 0 22 1 0 12 7 6 12 2 0 5 chain 37524 chr12 133275309 + 89891139 89891561 L1PA4 6152 + 5717 6140 36389 280 1 2 141 chain 4581 chr12 133275309 + 90059560 90059618 MER5A1 166 + 103 161 87905 58 chain 44372 chr12 133275309 + 90126133 90126806 L1PA13 3608 + 2871 3522 31902 261 2 1 27 1 0 113 2 0 20 0 1 41 9 8 13 1 0 35 1 0 4 3 1 47 2 0 5 2 0 20 1 0 20 24 16 14 1 0 4 chain 53809 chr12 133275309 + 90147497 90148136 LTR12_ 688 + 0 688 28281 110 5 54 524 chain 10470 chr12 133275309 + 90148136 90148284 MER50 708 + 549 696 69465 81 12 11 55 chain 28841 chr12 133275309 + 90189925 90190294 THE1B 368 + 0 368 43567 169 1 0 4 1 0 4 0 2 4 1 0 185 chain 98148 chr12 133275309 + 90208334 90209766 THE1C-int 1605 + 0 1597 18515 12 16 15 83 0 54 155 0 1 11 0 1 112 6 13 178 30 23 101 9 3 47 4 12 161 1 32 35 0 1 50 66 68 113 0 73 160 0 1 82 chain 16939 chr12 133275309 + 90237390 90237739 THE1B 368 + 0 366 59868 63 43 54 59 0 2 6 52 56 59 13 13 54 chain 32599 chr12 133275309 + 90384506 90384961 MER75 514 + 44 503 39863 27 0 2 34 17 20 124 0 2 64 1 0 76 1 0 96 1 0 14 chain 28383 chr12 133275309 + 90386616 90386918 AluYb8 318 + 2 304 44298 302 chain 116138 chr12 133275309 + 90410600 90411947 SVA_B 1603 + 50 1603 16203 373 0 116 90 0 1 204 1 0 4 0 82 38 0 4 14 1 0 204 0 8 409 3 0 6 chain 32834 chr12 133275309 + 90434293 90434750 MLT2A1 477 + 5 477 39642 164 4 1 11 0 1 203 4 0 18 16 37 37 chain 130808 chr12 133275309 + 90434750 90436377 HERVL-int 5654 + 0 1719 13944 20 5 0 43 7 0 5 1 0 309 0 1 310 0 102 55 0 2 872 chain 10111 chr12 133275309 + 90444713 90444826 L1PA2 6032 + 5917 6030 70176 113 chain 28567 chr12 133275309 + 90459312 90460227 THE1C-int 1605 + 118 1597 44004 34 539 1101 247 0 2 95 chain 23353 chr12 133275309 + 90478195 90478474 AluSc 308 + 18 295 51852 262 2 0 15 chain 560070 chr12 133275309 + 90536606 90542635 L1PA2 6032 + 3 6032 172 6029 chain 15991 chr12 133275309 + 90604206 90604395 THE1B-int 1605 + 1411 1600 61035 189 chain 77976 chr12 133275309 + 90615258 90616183 L1P2 5180 + 1584 2509 22104 925 chain 123547 chr12 133275309 + 90633099 90634711 L1PA8 5853 + 4237 5853 14924 127 1 0 387 0 1 255 0 2 9 0 1 464 0 4 77 1 0 44 2 0 74 1 0 7 1 0 55 1 0 10 4 1 5 0 2 47 0 13 8 16 7 16 chain 72825 chr12 133275309 + 90645792 90646732 L1PA8A 6298 + 5341 6290 23353 139 0 3 12 1 4 31 0 1 46 1 2 428 0 1 116 0 1 66 1 0 99 chain 89102 chr12 133275309 + 90666039 90667139 L1PA7 6471 + 5369 6466 19840 245 2 1 279 0 2 496 8 11 54 7 0 9 chain 139342 chr12 133275309 + 90686310 90687839 L1PA3long 6157 + 4628 6157 13151 1529 chain 4013 chr12 133275309 + 90728655 90728735 Tigger4a 237 + 25 91 91362 15 15 0 11 2 3 37 chain 6824 chr12 133275309 + 90737169 90737281 THE1B 368 + 222 331 78225 8 1 0 12 2 1 63 7 6 19 chain 45495 chr12 133275309 + 90746540 90747144 LTR12_ 688 + 0 688 31309 82 24 0 56 0 1 108 1 2 76 0 3 34 0 103 223 chain 27169 chr12 133275309 + 90755835 90756190 THE1A 353 + 0 353 46013 83 0 1 4 1 0 22 1 0 92 1 0 151 chain 12717 chr12 133275309 + 90761105 90761478 THE1D 372 + 3 372 65587 12 6 8 17 79 70 53 79 83 89 6 5 32 chain 47322 chr12 133275309 + 90785864 90786489 LTR12_ 688 + 13 665 30531 40 0 41 44 25 10 143 0 1 373 chain 64586 chr12 133275309 + 90800075 90800821 L1PA5 6144 + 5384 6131 25293 713 1 2 32 chain 84775 chr12 133275309 + 90823879 90825282 LTR12D 1347 + 0 1347 20667 39 18 10 191 0 1 7 27 27 21 8 61 103 0 41 37 0 31 132 36 5 314 43 16 12 10 9 25 1 0 36 23 0 81 91 0 148 chain 35767 chr12 133275309 + 90835153 90835611 MER4A1 472 + 0 462 37554 100 0 2 85 0 2 31 0 1 202 1 0 39 chain 28896 chr12 133275309 + 90841837 90842141 AluYk11 308 + 0 304 43487 304 chain 45287 chr12 133275309 + 90872347 90872845 L1PA2 6032 + 5534 6032 31428 498 chain 29240 chr12 133275309 + 90874460 90874961 MLT2A1 477 + 0 467 42980 14 0 1 125 0 1 21 7 11 32 0 1 58 0 8 52 1 0 35 6 13 12 93 38 45 chain 436929 chr12 133275309 + 90874971 90880592 HERVL-int 5654 + 0 5654 4624 175 1 2 472 0 1 15 0 1 37 1 2 39 7 8 118 0 5 164 0 1 38 0 1 228 0 1 375 21 22 399 1 4 82 1 2 45 0 6 328 0 1 85 32 53 272 0 1 5 6 5 583 1 3 377 2 1 5 0 1 101 9 14 596 5 6 73 0 1 4 1 0 24 0 1 160 0 1 71 0 7 127 3 0 69 3 0 7 11 4 69 44 26 112 0 1 217 chain 34020 chr12 133275309 + 90880592 90881175 MLT2A1 477 + 0 477 38694 142 0 1 26 1 5 32 0 1 35 0 1 81 1 0 57 0 4 12 115 15 13 16 0 52 chain 4154 chr12 133275309 + 90921545 90921594 MADE1 96 + 46 95 90439 49 chain 91896 chr12 133275309 + 90926476 90927646 L1P3 4156 + 2964 4139 19360 111 0 2 5 5 3 8 0 4 50 0 1 423 0 5 257 1 0 173 3 1 98 12 10 24 chain 67270 chr12 133275309 + 90930361 90931166 L1PA7 6471 + 5648 6456 24630 191 6 7 254 0 1 350 0 1 4 chain 26877 chr12 133275309 + 90947611 90947967 MER48 407 + 16 354 46434 14 0 1 5 1 0 96 20 1 63 0 1 157 chain 266379 chr12 133275309 + 90983301 90986518 HERV9-int 5642 + 0 3332 7793 176 1 2 293 1 3 125 4 5 5 2 0 107 6 0 79 1 0 72 0 85 149 17 10 133 1 0 267 0 3 139 1 0 4 0 1 203 0 37 497 0 2 676 0 1 258 chain 50820 chr12 133275309 + 91150535 91151185 L1PA8A 6298 + 5624 6281 29270 258 1 0 21 1 0 264 4 12 16 5 6 80 chain 25696 chr12 133275309 + 91164099 91164376 L1HS 6032 + 5752 6029 48178 277 chain 263368 chr12 133275309 + 91232056 91235031 L1PA4 6152 + 2544 5520 7868 530 0 2 864 0 1 688 1 0 251 2 1 639 chain 205440 chr12 133275309 + 91242268 91244900 L1P3 4156 + 0 2651 9523 251 1 0 30 15 25 14 1 0 89 1 0 186 0 1 110 0 5 493 3 0 178 0 3 219 0 1 272 2 0 273 23 26 50 1 0 4 1 2 190 1 4 209 2 3 13 chain 33409 chr12 133275309 + 91245123 91245542 L1PA7 6471 + 6046 6464 39166 85 0 1 180 9 10 137 3 0 5 chain 29899 chr12 133275309 + 91285610 91285939 L1PA2 6032 + 5701 6030 42136 329 chain 37756 chr12 133275309 + 91320337 91320783 L1PA6 6164 + 5720 6162 36239 290 0 1 6 1 0 139 4 0 6 chain 12638 chr12 133275309 + 91357768 91357913 L1PA7 6471 + 6320 6465 65735 145 chain 9176 chr12 133275309 + 91384173 91384284 MER85 139 + 0 121 72174 89 0 10 22 chain 6122 chr12 133275309 + 91410900 91411002 MER2 342 + 136 246 80642 20 0 1 16 0 7 35 14 14 17 chain 3799 chr12 133275309 + 91424831 91424873 MER46C 351 + 275 317 92856 42 chain 25830 chr12 133275309 + 91447733 91448025 AluY 311 + 18 311 47974 108 0 1 184 chain 147979 chr12 133275309 + 91461326 91463089 L1PA7 6471 + 4682 6455 12484 410 0 3 507 0 1 19 0 8 73 2 0 752 chain 28351 chr12 133275309 + 91473974 91474351 L1PA8 5853 + 5476 5846 44342 88 1 0 44 2 0 67 5 4 14 1 0 47 2 1 19 1 0 86 chain 22354 chr12 133275309 + 91487962 91488236 L1PA7 6471 + 6200 6469 53338 259 5 0 10 chain 39881 chr12 133275309 + 91521332 91521784 L1PA5 6144 + 5677 6129 34752 452 chain 331650 chr12 133275309 + 91556486 91560638 L1P3 4156 + 0 4136 6189 251 1 0 133 2 6 5 3 0 14 1 2 1490 1 0 290 0 1 66 0 1 327 1 0 43 0 1 114 3 6 127 0 3 392 1 2 59 1 0 213 0 4 141 2 0 68 1 0 49 1 5 20 27 1 273 2 0 7 2 1 21 chain 29726 chr12 133275309 + 91569152 91569609 MLT2A1 477 + 0 477 42334 81 9 10 78 4 1 54 5 3 26 1 0 4 0 1 125 33 57 37 chain 3027 chr12 133275309 + 91610959 91610996 MLT1F2 592 + 507 544 99535 37 chain 3960 chr12 133275309 + 91634647 91634694 LTR12C 1709 + 1039 1086 91694 47 chain 552 chr12 133275309 + 91634770 91634805 LTR12C 1709 + 683 718 97344 35 chain 20773 chr12 133275309 + 91676931 91677310 THE1D 372 + 0 372 55401 56 43 35 75 57 58 148 chain 19900 chr12 133275309 + 91734076 91734359 L1PA7 6471 + 6181 6459 56535 127 31 26 125 chain 110903 chr12 133275309 + 91781574 91783128 L1PA11 4918 + 3056 4578 16951 580 16 0 24 2 0 333 0 1 54 0 1 24 6 11 192 0 1 41 17 8 39 1 5 23 2 1 65 1 0 15 2 0 5 70 60 15 1 0 13 2 0 11 chain 24126 chr12 133275309 + 91784611 91784990 THE1D 372 + 0 372 50612 76 24 5 47 0 4 54 5 8 44 2 8 83 9 8 35 chain 329421 chr12 133275309 + 91805438 91810051 L1PA11 4918 + 8 4578 6224 7 1 0 27 2 0 36 2 0 6 7 6 18 6 5 15 2 0 52 1 0 33 9 6 106 12 10 197 4 8 19 5 4 4 1 0 176 0 1 121 7 8 246 0 1 200 1 0 6 0 1 276 5 9 158 5 0 15 0 1 27 0 1 186 7 7 134 0 3 34 48 42 21 1 0 187 0 12 25 3 1 6 0 3 16 13 10 20 1 0 19 7 0 16 10 6 50 1 0 1048 4 0 543 14 11 94 2 0 5 16 15 65 2 1 19 0 1 61 2 0 32 44 32 15 1 0 13 2 0 11 chain 16382 chr12 133275309 + 91832044 91832233 L1PA5 6144 + 5939 6128 60540 189 chain 5990 chr12 133275309 + 91845890 91845977 LTR37A 408 + 79 164 81125 49 1 0 26 1 0 10 chain 30947 chr12 133275309 + 91875049 91875497 MLT2A1 477 + 0 477 41178 162 14 11 29 0 5 80 0 2 44 1 2 50 32 56 36 chain 80445 chr12 133275309 + 91957098 91958107 L1PA8 5853 + 4834 5846 21536 59 1 7 109 0 2 11 7 8 52 0 2 480 1 0 45 2 0 70 1 0 9 1 0 54 1 0 18 1 0 82 1 0 4 chain 29454 chr12 133275309 + 92031706 92032057 L1PA7 6471 + 5518 5868 42666 103 1 0 247 chain 62286 chr12 133275309 + 92057441 92058184 L1PA8A 6298 + 4741 5485 25797 84 1 0 64 0 1 305 4 5 285 chain 3089 chr12 133275309 + 92073319 92073354 MLT1C 463 + 428 463 98876 35 chain 3527 chr12 133275309 + 92081483 92081524 MIR 256 + 85 126 95040 41 chain 22641 chr12 133275309 + 92118631 92118939 HSMAR2 1300 + 1 338 52922 44 2 0 55 16 47 191 chain 15834 chr12 133275309 + 92151882 92152093 L1MA4 2864 + 2378 2589 61242 123 1 0 4 0 3 9 2 0 72 chain 559186 chr12 133275309 + 92313998 92320023 L1PA2 6032 + 7 6031 195 6011 1 0 13 chain 62078 chr12 133275309 + 92345065 92345797 THE1A-int 1579 + 840 1573 25851 685 0 1 47 chain 35446 chr12 133275309 + 92386724 92387163 LTR12F 595 + 12 595 37755 60 0 143 149 0 1 230 chain 437233 chr12 133275309 + 92387193 92392560 HERV9-int 5642 + 10 5400 4613 27 0 1 536 37 0 123 21 0 19 6 0 130 0 5 12 0 85 153 23 10 418 0 1 50 14 1 242 1 2 1996 0 1 4 1 0 484 9 26 8 0 1 871 17 19 165 chain 35880 chr12 133275309 + 92393750 92394200 LTR12F 595 + 0 594 37482 79 2 145 140 0 1 229 chain 6309 chr12 133275309 + 92519156 92519293 MER58A 224 + 45 214 79968 20 1 0 21 42 75 53 chain 33472 chr12 133275309 + 92565175 92565738 L1PA15 4387 + 3827 4353 39115 64 3 1 41 1 0 171 1 0 26 1 0 55 1 0 22 13 10 39 52 38 6 7 0 14 3 1 14 5 0 24 chain 82663 chr12 133275309 + 92567217 92568230 L1PA7 6471 + 5424 6456 21089 49 0 5 131 1 5 12 0 5 43 11 13 305 0 3 461 chain 41921 chr12 133275309 + 92671192 92671693 L1PA7 6471 + 5956 6469 33413 180 0 1 58 1 5 252 0 7 10 chain 452407 chr12 133275309 + 92789578 92794873 L1PA6 6164 + 427 6147 4323 90 0 2 48 1 0 298 0 10 31 0 4 345 24 7 31 0 18 131 0 9 39 0 1 910 0 1 197 0 1 585 1 0 6 2 0 115 1 0 91 2 0 354 1 0 156 1 2 45 0 1 735 0 403 688 5 4 362 chain 29001 chr12 133275309 + 92831803 92832112 AluYb8 318 + 0 307 43316 132 2 0 175 chain 4837 chr12 133275309 + 92883633 92883690 Tigger2b_Pri 1066 + 830 887 86508 57 chain 478080 chr12 133275309 + 92916601 92921762 L1PA2 6032 + 871 6032 3673 5161 chain 57247 chr12 133275309 + 92935472 92936863 MER4E 760 + 0 752 27181 113 347 0 251 310 0 17 10 14 106 0 2 21 0 10 202 0 2 14 chain 3512 chr12 133275309 + 92941805 92941846 THE1D 372 + 331 372 95161 41 chain 7910 chr12 133275309 + 92952650 92952738 U6 107 + 12 100 75090 88 chain 57925 chr12 133275309 + 92964144 92964877 MER4E1 777 + 0 769 26988 189 1 0 14 0 1 127 1 20 175 9 25 126 7 8 84 chain 38948 chr12 133275309 + 92966659 92967501 MLT2A2 560 + 0 558 35396 183 309 0 13 17 30 173 3 14 46 1 2 97 chain 45697 chr12 133275309 + 92980119 92980750 L1PA15 4387 + 67 720 31208 178 1 0 53 2 1 53 1 2 54 0 11 24 0 5 24 1 2 94 0 4 79 6 5 12 0 3 49 chain 25611 chr12 133275309 + 93045670 93046034 THE1B 368 + 0 368 48302 169 1 0 21 7 10 14 0 4 7 20 18 125 chain 75679 chr12 133275309 + 93074402 93075369 LTR5_Hs 974 + 0 974 22666 285 0 1 97 0 1 83 0 1 188 1 0 163 8 15 16 23 21 103 chain 20835 chr12 133275309 + 93137118 93137368 L1PA5 6144 + 5896 6141 55321 239 5 0 6 chain 32338 chr12 133275309 + 93177778 93178328 LTR19B 566 + 0 546 40084 159 0 3 130 4 7 17 116 104 23 2 0 7 0 2 38 1 3 53 chain 3365 chr12 133275309 + 93188160 93188195 MER90a 614 + 576 611 96433 35 chain 20745 chr12 133275309 + 93204547 93204932 THE1D 372 + 0 372 55441 38 27 9 21 34 35 63 29 34 23 2 1 148 chain 25431 chr12 133275309 + 93216605 93216953 THE1B 368 + 0 358 48581 28 12 27 120 1 0 19 4 0 164 chain 9514 chr12 133275309 + 93224678 93224863 L1MB3 1562 + 1384 1545 71442 37 1 0 4 31 8 6 2 0 80 3 5 21 chain 3603 chr12 133275309 + 93281754 93281794 MER57B1 401 + 294 334 94404 40 chain 46152 chr12 133275309 + 93290660 93291327 MER4D1 891 + 0 606 30983 368 1 0 53 78 18 9 0 1 8 1 0 149 chain 26166 chr12 133275309 + 93369220 93369643 MER4D 903 + 159 888 47478 57 7 9 24 7 0 3 6 0 25 1 0 4 5 6 142 1 315 35 0 1 43 11 13 52 chain 6061 chr12 133275309 + 93426870 93426941 MER30 238 + 124 195 80864 71 chain 23111 chr12 133275309 + 93434020 93434302 AluSc5 308 + 10 291 52195 98 0 1 22 2 0 160 chain 4222 chr12 133275309 + 93529359 93529409 MLT2D 439 + 108 159 89992 36 0 1 14 chain 6267 chr12 133275309 + 93529418 93529514 MER1B 344 + 201 301 80098 67 16 20 13 chain 4010 chr12 133275309 + 93532256 93532349 MLT1B 390 + 0 80 91376 20 19 11 20 6 1 28 chain 211907 chr12 133275309 + 93557985 93560922 L1PA10 4194 + 1542 4150 9290 81 0 1 497 0 1 279 8 4 223 7 8 241 0 1 31 0 3 25 332 0 321 1 2 127 0 1 346 0 2 370 2 1 9 3 0 34 chain 24334 chr12 133275309 + 93617915 93618305 MSTA 426 + 0 405 50273 100 3 4 22 27 33 24 1 2 19 1 4 28 2 0 64 9 17 78 2 0 10 chain 17953 chr12 133275309 + 93623064 93623389 THE1D 372 + 8 336 58698 48 29 30 74 0 3 5 10 8 8 1 0 9 3 0 5 21 26 112 chain 48227 chr12 133275309 + 93632558 93633154 THE1D-int 1627 + 1023 1622 30208 114 2 0 5 1 3 184 0 1 125 6 8 159 chain 12729 chr12 133275309 + 93653346 93653588 Tigger3a 397 + 61 324 65568 17 51 61 93 0 1 57 10 20 14 chain 2557 chr12 133275309 + 93664032 93664085 MLT1H1 527 + 11 57 103342 25 15 8 13 chain 20506 chr12 133275309 + 93800401 93800759 THE1D 372 + 0 372 55778 61 1 2 41 0 1 55 64 64 43 7 20 53 1 0 32 chain 32666 chr12 133275309 + 93884367 93884792 MER61B 427 + 0 427 39790 193 1 4 6 3 0 127 0 2 95 chain 14009 chr12 133275309 + 93891048 93891539 MER4E 760 + 565 755 63583 124 0 4 18 305 0 44 chain 2971 chr12 133275309 + 93896142 93896175 MER53 195 + 26 59 100190 33 chain 9258 chr12 133275309 + 93898221 93898417 LTR39 781 + 8 164 72004 27 26 11 69 36 11 38 chain 6906 chr12 133275309 + 93913185 93913261 L1MB3 1562 + 1248 1324 77006 76 chain 81656 chr12 133275309 + 93913261 93914450 L1PA16 3655 + 2288 3474 21308 10 0 1 16 0 18 12 24 0 154 0 1 169 6 5 55 2 4 152 0 4 14 1 0 19 10 9 96 13 14 47 1 0 104 14 13 88 2 0 122 0 1 58 chain 43805 chr12 133275309 + 93925905 93926458 LTR19B 566 + 0 566 32248 211 0 10 229 0 1 42 0 5 16 3 0 52 chain 8271 chr12 133275309 + 93933264 93933386 MER4B 649 + 499 644 74235 54 6 30 50 1 0 11 chain 3931 chr12 133275309 + 93947429 93947498 MER34C_ 573 + 436 516 91902 12 4 0 29 0 5 11 2 12 11 chain 50512 chr12 133275309 + 93959222 93959889 L1PB3 3668 + 1422 2091 29376 211 17 18 71 0 1 368 chain 136579 chr12 133275309 + 93987976 93989455 L1PA2 6032 + 4553 6032 13380 1479 chain 132047 chr12 133275309 + 93997926 93999796 L1PA16 3655 + 1728 3561 13824 67 1 0 69 4 5 132 7 3 5 0 3 79 0 2 19 6 4 92 6 9 454 18 17 92 1 0 211 1 0 106 52 19 84 2 1 88 1 0 186 14 12 4 0 1 69 chain 13607 chr12 133275309 + 94002026 94002207 MER21B 843 + 15 195 64156 20 0 1 48 3 1 110 chain 3918 chr12 133275309 + 94018779 94018826 MER34A1 583 + 465 512 91995 47 chain 76396 chr12 133275309 + 94050057 94050923 L1PA6 6164 + 5090 5957 22465 172 0 1 694 chain 514316 chr12 133275309 + 94064286 94070399 L1PA6 6164 + 1 6162 2552 235 0 2 134 0 5 141 0 2 47 1 0 220 0 17 444 0 1 11 18 3 189 0 1 478 0 1 327 13 12 61 0 2 11 0 1 429 0 5 386 0 4 19 0 1 24 0 1 73 4 8 44 0 1 60 0 1 121 1 0 1129 0 5 80 0 1 324 0 1 768 0 1 310 0 9 11 chain 20251 chr12 133275309 + 94085763 94086054 MER2 342 + 16 319 56078 52 2 3 7 0 5 30 1 0 25 0 8 87 7 6 80 chain 15313 chr12 133275309 + 94110399 94110718 MER1B 344 + 0 344 61893 18 68 70 140 33 57 39 1 0 20 chain 13418 chr12 133275309 + 94197219 94197419 MSTD 398 + 2 182 64442 157 23 3 20 chain 29247 chr12 133275309 + 94275571 94275883 AluYa5 310 + 0 310 42971 123 2 0 187 chain 6256 chr12 133275309 + 94345320 94345573 MER21A 919 + 21 166 80154 35 145 46 34 0 3 17 12 0 10 chain 3050 chr12 133275309 + 94346654 94346796 MER21B 843 + 659 800 99297 19 94 93 29 chain 14302 chr12 133275309 + 94349317 94349486 HSMAR1 1287 + 1114 1287 63195 35 0 4 134 chain 40975 chr12 133275309 + 94355583 94356073 MER9a1 513 + 0 513 33987 212 0 1 31 1 23 246 chain 107797 chr12 133275309 + 94357394 94358740 HERVK9-int 4720 + 36 1374 17353 13 13 9 66 1 0 8 1 0 29 1 0 829 2 1 34 2 1 91 1 2 255 chain 38475 chr12 133275309 + 94358816 94359308 MER9a1 513 + 0 513 35737 11 1 2 199 0 1 36 0 22 141 8 5 96 chain 3899 chr12 133275309 + 94367280 94367326 L1MC4a 1092 + 612 658 92136 46 chain 2646 chr12 133275309 + 94383371 94383454 MER47A 366 + 0 84 102752 29 37 38 17 chain 489315 chr12 133275309 + 94389502 94395342 L1PA6 6164 + 1 6162 3438 116 0 1 77 0 1 4 1 0 36 0 2 37 1 2 241 0 2 47 1 0 170 14 13 37 5 22 507 0 1 637 1 0 363 14 8 50 0 3 31 12 5 324 11 12 520 0 15 411 0 1 432 0 2 459 0 2 190 3 1 509 0 4 247 0 1 151 0 286 181 chain 79698 chr12 133275309 + 94398346 94399376 MER11A 1151 + 0 1151 21696 85 0 91 24 1 0 95 2 1 19 1 0 11 0 2 152 16 17 171 11 14 156 1 0 14 0 23 41 2 0 54 1 2 98 0 6 75 chain 13430 chr12 133275309 + 94420507 94420701 MER30 238 + 46 238 64416 54 15 13 125 chain 28873 chr12 133275309 + 94441937 94442515 L1PB1 5432 + 4921 5430 43525 113 0 1 68 5 2 11 5 0 22 1 0 6 1 0 14 50 10 51 15 17 43 2 1 15 1 0 5 18 8 18 4 2 4 1 0 14 3 1 23 1 0 22 1 0 12 1 0 14 1 0 8 1 0 4 chain 58503 chr12 133275309 + 94454352 94455136 LTR12_ 688 + 7 688 26815 497 103 0 184 chain 168215 chr12 133275309 + 94484596 94486439 L1PA3long 6157 + 4313 6156 11207 15 0 1 1067 1 0 760 chain 50551 chr12 133275309 + 94495164 94495798 MER41B 635 + 0 635 29363 130 0 1 504 chain 8827 chr12 133275309 + 94589137 94589249 MER30 238 + 129 238 72924 67 3 0 42 chain 22625 chr12 133275309 + 94680799 94681148 THE1B 368 + 0 368 52949 44 9 24 13 1 2 56 31 33 29 0 2 90 1 0 75 chain 34309 chr12 133275309 + 94694831 94695343 MER1A 529 + 42 529 38487 46 16 0 119 1 2 77 5 4 112 3 0 53 24 18 56 chain 6168 chr12 133275309 + 94702745 94702811 L1HS 6032 + 5966 6032 80456 66 chain 14733 chr12 133275309 + 94755101 94755419 L1PB1 5432 + 5114 5420 62626 24 2 1 7 1 0 10 2 0 3 2 0 9 2 0 49 6 5 14 1 0 35 10 9 16 14 1 30 1 0 4 3 1 14 2 0 24 2 1 13 0 18 18 chain 14810 chr12 133275309 + 94791687 94791913 L1PA8 5853 + 5631 5853 62512 47 24 22 35 8 7 18 1 0 93 chain 37399 chr12 133275309 + 94817142 94817593 LTR2 463 + 0 463 36472 55 0 3 168 0 5 184 0 4 44 chain 7135 chr12 133275309 + 94818455 94818573 MER50 708 + 6 129 77151 45 2 3 6 2 0 19 4 9 15 0 1 25 chain 526147 chr12 133275309 + 94822819 94829012 L1PA5 6144 + 0 6137 1990 135 17 31 571 1 0 55 5 15 64 0 1 297 9 0 93 15 16 257 1 0 162 1 0 573 0 1 905 3 0 1137 0 3 25 0 4 283 1 0 90 6 3 20 16 0 151 1 2 400 1 0 168 2 0 5 20 0 180 33 0 490 chain 9800 chr12 133275309 + 94868418 94868538 Tigger1 2417 + 1039 1159 70818 120 chain 24707 chr12 133275309 + 94869377 94869673 AluSp 311 + 5 301 49716 296 chain 117445 chr12 133275309 + 94883669 94885113 L1P2 5180 + 1931 3377 15981 644 0 4 202 7 10 239 9 1 146 1 0 55 0 4 141 chain 43302 chr12 133275309 + 94905718 94906230 MER9a1 513 + 0 513 32569 212 0 1 300 chain 8303 chr12 133275309 + 94940425 94940567 MLT1A0 366 + 23 164 74153 4 1 0 4 1 0 17 5 6 29 1 0 47 7 8 26 chain 26006 chr12 133275309 + 94988534 94988910 MER48 407 + 0 407 47708 72 0 11 69 28 46 151 5 7 51 chain 4575 chr12 133275309 + 94997899 94997954 MER20 218 + 21 75 87934 50 1 0 4 chain 7713 chr12 133275309 + 95000000 95000112 L1PB2 3958 + 3729 3838 75588 21 2 0 24 3 2 62 chain 17525 chr12 133275309 + 95145357 95145675 MER31A 484 + 53 407 59211 48 21 64 48 4 0 43 1 0 5 17 18 20 16 13 95 chain 91959 chr12 133275309 + 95155791 95156862 MER11C 1089 + 0 1073 19347 101 1 0 490 0 1 80 1 0 104 0 1 110 4 5 153 0 1 27 chain 6566 chr12 133275309 + 95275792 95275869 HY3 101 + 22 99 79092 77 chain 68052 chr12 133275309 + 95330732 95331667 MER41-int 2638 + 1703 2633 24447 32 0 1 166 1 0 7 1 2 8 1 0 114 2 0 61 3 0 7 3 1 85 5 4 186 0 1 4 22 21 51 0 1 33 0 1 37 0 1 106 chain 10672 chr12 133275309 + 95367250 95367450 L1PB1 5432 + 5241 5422 69097 40 1 0 15 3 0 6 15 7 17 3 1 5 1 0 14 2 0 46 1 0 12 1 0 18 chain 37626 chr12 133275309 + 95373984 95374393 L1PA3long 6157 + 5747 6155 36321 151 1 0 257 chain 127741 chr12 133275309 + 95379425 95380921 LTR12C 1709 + 0 1709 14318 266 0 1 31 0 23 403 0 188 199 1 0 6 2 0 107 0 4 481 chain 40931 chr12 133275309 + 95383992 95384480 LTR3B_ 500 + 15 500 34012 146 0 1 140 5 1 197 chain 39024 chr12 133275309 + 95388273 95388723 LTR2 463 + 0 463 35339 347 0 13 103 chain 3852 chr12 133275309 + 95617720 95617783 HY1 111 + 32 110 92488 24 11 26 28 chain 53474 chr12 133275309 + 95677680 95678353 L1PA8 5853 + 5188 5853 28406 376 1 0 47 3 1 66 12 10 4 1 0 48 2 1 22 1 0 90 chain 24811 chr12 133275309 + 95728723 95729132 MSTA 426 + 0 426 49573 100 3 4 25 1 0 8 15 19 49 35 39 56 0 5 6 3 6 52 0 1 56 chain 50373 chr12 133275309 + 95745991 95746550 LTR6B 557 + 0 557 29422 401 2 0 156 chain 28963 chr12 133275309 + 95748861 95749284 LTR7Y 441 + 0 441 43389 97 17 8 47 64 91 198 chain 296165 chr12 133275309 + 95749284 95753199 HERVH-int 3825 + 0 3825 6946 212 0 11 309 69 0 38 1 0 10 1 0 10 4 0 13 135 1 14 1 0 13 0 38 28 1 0 28 43 0 5 41 0 49 1 0 444 15 0 462 91 31 393 0 2 225 5 7 152 0 13 612 1 211 250 14 19 225 chain 3625 chr12 133275309 + 95749834 95749874 HERVH-int 3825 + 436 476 94227 40 chain 5519 chr12 133275309 + 95749962 95750028 HERVH-int 3825 + 436 500 83164 53 2 0 11 chain 4508 chr12 133275309 + 95751269 95751318 HERVH-int 3825 + 1636 1685 88284 49 chain 29853 chr12 133275309 + 95754457 95754890 LTR7Y 441 + 0 441 42180 103 9 0 57 67 83 80 0 1 117 chain 537431 chr12 133275309 + 95775205 95781309 L1PA5 6144 + 3 6140 1486 679 0 20 1562 1 2 177 9 4 284 0 5 712 0 1 232 0 3 493 0 3 561 0 7 936 0 2 279 4 0 16 18 18 141 chain 21517 chr12 133275309 + 95825625 95825901 AluSg7 307 + 3 281 54486 105 0 1 22 24 25 125 chain 7475 chr12 133275309 + 95857404 95857587 MER51A 677 + 463 654 76189 27 54 52 45 8 19 7 1 0 41 chain 54642 chr12 133275309 + 95876840 95877483 PABL_A 660 + 0 653 27997 44 1 0 40 0 9 141 1 3 416 chain 13981 chr12 133275309 + 95910360 95910563 L1PA17 2846 + 1653 1855 63625 118 15 14 70 chain 165946 chr12 133275309 + 95946654 95949150 SVA_F 1814 + 11 1814 11337 888 189 0 49 224 14 237 150 0 71 144 0 544 chain 6721 chr12 133275309 + 95947542 95947620 SVA_F 1814 + 1090 1168 68097 37 0 1 10 1 0 30 chain 2585 chr12 133275309 + 95947640 95947670 SVA_F 1814 + 1188 1218 68097 30 chain 3216 chr12 133275309 + 95947693 95947729 SVA_F 1814 + 975 1011 56640 36 chain 3930 chr12 133275309 + 95947780 95947824 SVA_F 1814 + 1139 1183 56640 44 chain 6778 chr12 133275309 + 95947824 95948004 SVA_F 1814 + 1007 1187 45405 180 chain 4417 chr12 133275309 + 95948241 95948292 SVA_F 1814 + 974 1025 70141 51 chain 3082 chr12 133275309 + 95948292 95948337 SVA_F 1814 + 1103 1148 74009 45 chain 5399 chr12 133275309 + 95948462 95948557 SVA_F 1814 + 1094 1186 50651 83 3 0 9 chain 4192 chr12 133275309 + 95948559 95948605 SVA_F 1814 + 1186 1232 90187 46 chain 116666 chr12 133275309 + 95968950 95970637 LTR12C 1709 + 0 1709 16108 104 5 4 402 3 4 274 273 161 162 11 10 96 7 11 265 0 131 85 chain 3638 chr12 133275309 + 96036020 96036059 tRNA-Asp-GAY 44 + 0 39 94118 39 chain 44001 chr12 133275309 + 96042284 96042854 PABL_A 660 + 10 653 32129 6 0 1 65 1 10 83 2 86 103 0 5 183 26 0 101 chain 8941 chr12 133275309 + 96080823 96080936 MLT1C 463 + 345 458 72685 113 chain 32558 chr12 133275309 + 96086370 96086875 THE1D-int 1627 + 0 404 39905 15 0 2 20 1 0 323 102 0 44 chain 11953 chr12 133275309 + 96088635 96088784 THE1D 372 + 224 372 66916 116 1 0 32 chain 126967 chr12 133275309 + 96108721 96110328 LTR12C 1709 + 0 1709 14421 336 0 43 273 0 119 66 1 0 112 48 0 163 1 0 5 11 9 98 11 4 399 1 0 82 chain 4057 chr12 133275309 + 96109509 96109557 LTR12C 1709 + 1109 1156 51740 3 1 0 44 chain 59597 chr12 133275309 + 96158268 96158916 SVA_D 2077 + 1429 2077 26483 648 chain 38457 chr12 133275309 + 96184014 96184533 LTR12F 595 + 0 587 35749 100 0 85 17 22 13 111 8 0 261 chain 5452 chr12 133275309 + 96253288 96253351 Tigger1 2417 + 2037 2100 83455 63 chain 8838 chr12 133275309 + 96314435 96314545 MER85 139 + 0 121 72895 30 0 1 58 0 10 22 chain 555688 chr12 133275309 + 96315942 96321971 L1PA2 6032 + 0 6031 371 149 3 1 6 0 2 549 1 0 576 0 9 1768 0 1 1040 0 4 94 11 0 1832 chain 46315 chr12 133275309 + 96431649 96432722 PABL_A 660 + 35 652 30916 115 0 1 127 4 5 39 0 1 9 479 0 124 0 20 176 chain 51147 chr12 133275309 + 96441122 96441694 L1PA5 6144 + 5570 6142 29183 572 chain 23184 chr12 133275309 + 96466573 96466844 AluSp 311 + 17 288 52103 271 chain 15903 chr12 133275309 + 96500009 96500282 L1MC1 2226 + 1785 2045 61146 54 28 25 23 7 1 29 1 0 58 6 3 67 chain 3031 chr12 133275309 + 96545726 96545761 MER39B 650 + 415 450 99488 35 chain 27981 chr12 133275309 + 96591607 96591908 AluYg6 310 + 0 298 44900 131 3 0 167 chain 529817 chr12 133275309 + 96610425 96616506 L1PA5 6144 + 3 6128 1834 117 0 14 934 5 3 5 0 2 244 0 1 42 19 11 240 2 3 97 0 5 529 1 0 84 0 19 420 1 2 45 0 1 345 0 1 286 0 6 890 0 4 275 1 0 1177 0 1 322 chain 262768 chr12 133275309 + 96639123 96642077 L1PA4 6152 + 3182 6140 7885 757 5 6 409 0 4 819 1 0 963 chain 92310 chr12 133275309 + 96645254 96646301 L1PA4 6152 + 4294 5344 19299 270 1 2 69 1 0 542 1 0 127 0 4 36 chain 4000 chr12 133275309 + 96659439 96659621 ORSL 269 + 50 235 91452 18 2 3 38 109 111 15 chain 4765 chr12 133275309 + 96677309 96677368 MLT1A0 366 + 289 348 86887 59 chain 3006 chr12 133275309 + 96861393 96861427 MER20 218 + 159 193 99786 34 chain 27849 chr12 133275309 + 96892283 96892630 THE1A 353 + 6 351 45107 82 1 0 22 1 0 241 chain 131319 chr12 133275309 + 96892633 96894207 THE1A-int 1579 + 1 1572 13888 126 0 1 182 4 0 1262 chain 26655 chr12 133275309 + 96894213 96894567 THE1A 353 + 0 353 46752 103 20 19 231 chain 21454 chr12 133275309 + 97037058 97037326 AluSz6 309 + 42 309 54579 91 1 0 176 chain 2784 chr12 133275309 + 97053085 97053119 L1MA8 2339 + 2299 2333 101732 34 chain 93024 chr12 133275309 + 97114234 97115257 L1PA3long 6157 + 5121 6146 19176 893 0 1 71 0 1 59 chain 32643 chr12 133275309 + 97161831 97162244 MER57A1 433 + 0 433 39815 37 0 20 108 1 0 111 0 1 156 chain 29986 chr12 133275309 + 97191390 97191821 LOR1b 457 + 9 457 42066 22 3 11 39 2 0 63 3 1 9 28 41 262 chain 5405 chr12 133275309 + 97203290 97203357 U3 216 + 0 70 83680 32 0 3 35 chain 398478 chr12 133275309 + 97204066 97209544 L1PB1 5432 + 12 5420 5176 7 1 0 525 2 1 42 0 4 313 0 1 5 1 0 118 10 11 39 0 1 200 1 0 109 1 2 5 0 2 6 0 8 52 0 1 78 0 1 167 1 0 6 0 4 136 3 0 391 1 0 248 24 8 7 0 5 311 8 5 11 18 26 51 2 0 95 15 1 196 2 1 207 0 1 9 1 2 45 0 1 5 7 11 28 4 5 44 8 9 33 0 2 97 22 21 36 1 11 59 0 1 142 0 7 6 25 21 188 0 1 276 6 12 129 1 0 182 2 4 296 13 0 11 49 0 24 1 0 9 1 0 11 5 1 8 2 0 53 18 16 45 1 0 15 25 12 19 22 17 26 1 0 17 5 4 13 1 0 16 chain 5912 chr12 133275309 + 97369387 97369483 L1PB1 5432 + 5328 5418 81432 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 14 chain 23856 chr12 133275309 + 97371213 97371500 AluSp 311 + 9 289 51016 15 6 0 108 1 0 157 chain 5571 chr12 133275309 + 97577999 97578093 MADE1 96 + 0 96 82926 26 0 1 42 0 1 26 chain 459476 chr12 133275309 + 97581715 97587862 L1PA8 5853 + 50 5850 4144 22 2 0 10 1 0 6 59 20 15 15 21 158 2 6 121 0 1 298 0 2 5 10 7 551 0 1 380 0 1 51 0 1 147 3 4 481 0 1 480 0 5 23 0 1 8 6 5 564 309 0 53 5 0 201 0 13 125 0 1 218 1 5 948 2 0 74 3 4 7 1 0 208 0 1 223 47 8 27 1 0 46 2 0 71 2 1 13 1 0 43 0 17 7 1 0 90 chain 8804 chr12 133275309 + 97588110 97588222 MER3 215 + 4 116 72983 112 chain 510429 chr12 133275309 + 97672583 97679091 L1PA6 6164 + 0 6162 2746 227 9 11 171 17 18 50 1 0 133 0 1 108 7 0 73 17 0 15 13 30 240 3 6 1163 7 3 84 0 1 354 0 1 83 1 0 4 0 2 18 1 0 61 326 0 26 14 0 48 0 2 488 9 0 314 11 1 411 3 0 350 0 2 150 1 0 550 0 13 103 0 3 174 0 1 660 1 0 9 chain 10056 chr12 133275309 + 97721715 97721822 U6 107 + 0 107 70293 107 chain 182660 chr12 133275309 + 97721822 97723838 L1HS 6032 + 1199 3215 10459 2016 chain 536485 chr12 133275309 + 97723839 97729872 L1PA3long 6157 + 0 6157 1531 152 0 1 103 0 1 510 11 139 31 4 0 5074 6 0 81 6 10 55 chain 44915 chr12 133275309 + 97749196 97749808 MER4A1_ 611 + 0 611 31629 70 2 4 38 9 11 11 5 1 241 5 4 231 chain 24898 chr12 133275309 + 97781611 97781986 THE1B 368 + 1 368 49437 12 2 0 34 0 1 54 14 15 52 31 24 100 1 0 75 chain 333166 chr12 133275309 + 97806282 97810373 L1PA7 6471 + 2378 6467 6166 256 1 2 660 0 2 199 4 0 69 17 18 572 18 20 25 0 1 203 5 6 538 1 0 211 1 0 102 0 6 4 6 0 349 2 0 110 0 1 109 0 3 488 4 0 127 2 0 8 chain 243747 chr12 133275309 + 97831441 97834163 L1PA4 6152 + 2465 5187 8386 706 1 0 143 0 1 1872 chain 3544 chr12 133275309 + 97852269 97852311 L1PA8 5853 + 5637 5679 94910 42 chain 11522 chr12 133275309 + 97852329 97852495 L1PA8 5853 + 5688 5853 67710 52 3 2 18 1 0 76 3 4 13 chain 369674 chr12 133275309 + 97866084 97870508 L1P2 5180 + 2 4960 5667 86 0 507 192 8 6 134 0 25 61 1 0 1374 7 8 897 1 0 202 0 1 194 2 0 496 1 2 271 0 3 336 1 3 160 chain 143901 chr12 133275309 + 97878673 97880252 L1PA3long 6157 + 4346 5924 12776 961 1 0 617 chain 19538 chr12 133275309 + 97880255 97880474 L1PA3long 6157 + 5929 6148 56972 219 chain 24998 chr12 133275309 + 97941285 97941703 L1PA15 4387 + 3959 4351 49285 144 2 1 27 1 0 54 1 0 12 23 20 50 19 6 41 3 1 14 5 0 22 chain 4198 chr12 133275309 + 98005676 98005737 L1MA9 1812 + 1678 1736 90138 27 1 0 19 2 0 12 chain 8375 chr12 133275309 + 98056256 98056363 MLT1A 405 + 285 392 73961 107 chain 15312 chr12 133275309 + 98059568 98059971 MSTB2 466 + 48 466 61896 12 2 10 22 1 0 49 1 47 9 22 0 4 2 0 11 20 0 37 37 35 15 66 74 93 chain 28106 chr12 133275309 + 98102018 98102523 L1PB1 5432 + 4915 5381 44707 173 0 4 11 5 2 11 9 0 22 37 29 53 2 1 14 2 1 45 1 0 15 14 1 11 1 0 19 2 0 5 1 0 14 2 0 24 1 0 11 chain 526582 chr12 133275309 + 98201687 98208155 L1PA7 6471 + 1 6470 1971 132 21 20 250 2 3 352 0 1 99 1 11 387 8 7 56 0 1 1193 1 0 128 1 2 443 10 14 237 1 0 166 1 0 76 5 7 135 1 0 72 1 2 246 7 14 42 0 1 424 0 2 374 1 0 711 35 21 20 17 7 41 0 2 257 0 1 501 2 0 11 chain 76401 chr12 133275309 + 98278356 98279169 L1HS 6032 + 5219 6032 22462 813 chain 515261 chr12 133275309 + 98310768 98316912 L1PA6 6164 + 3 6162 2504 192 0 1 4 1 0 37 0 2 63 0 8 208 0 2 47 1 0 393 0 1 293 1 0 472 1 2 458 0 2 137 0 1 864 0 2 433 0 1 4 1 0 485 38 0 255 0 4 231 0 1 43 1 0 115 0 22 290 5 14 224 0 1 847 chain 22119 chr12 133275309 + 98327658 98327925 AluSq2 311 + 26 294 53674 107 0 1 160 chain 56862 chr12 133275309 + 98381567 98382270 L1PA10 4194 + 3460 4161 27311 224 1 0 360 0 3 69 19 16 18 1 0 11 chain 10791 chr12 133275309 + 98436128 98436261 Tigger2 2703 + 2343 2480 68879 28 0 4 105 chain 114241 chr12 133275309 + 98457447 98458709 L1PA3long 6157 + 4891 6157 16515 1207 0 4 55 chain 26339 chr12 133275309 + 98477096 98477465 THE1D 372 + 0 372 47216 178 14 16 15 18 19 144 chain 29688 chr12 133275309 + 98497183 98497583 MER57A1 433 + 0 403 42382 64 10 11 214 6 8 106 chain 3424 chr12 133275309 + 98503502 98503541 tRNA-Asp-GAY 44 + 0 39 95878 39 chain 6686 chr12 133275309 + 98504251 98504323 tRNA-Trp-TGG 72 + 0 72 78683 72 chain 33352 chr12 133275309 + 98508992 98509578 MER4A 717 + 19 699 39216 14 1 0 16 0 1 54 4 1 27 3 1 39 0 83 14 11 4 45 15 41 11 0 2 17 0 17 82 59 36 71 5 6 98 chain 23225 chr12 133275309 + 98517880 98518165 AluSq10 312 + 0 303 52042 123 7 0 28 0 1 4 0 24 123 chain 59493 chr12 133275309 + 98576656 98577340 L1PA7 6471 + 5782 6466 26511 684 chain 25021 chr12 133275309 + 98608324 98608660 AluY 311 + 0 311 49242 54 27 0 77 0 2 42 5 3 40 0 2 91 chain 24082 chr12 133275309 + 98756115 98756472 THE1B 368 + 0 368 50676 169 1 0 29 0 3 5 46 55 107 chain 95631 chr12 133275309 + 98961920 98963817 L1MA3 4352 + 96 3391 18826 60 1 0 4 17 1 11 0 3 138 17 12 71 0 1 21 2 1 5 0 1 125 16 0 9 3 1 96 1 6 111 26 27 58 0 1 6 2 0 9 1 0 6 0 1 33 4 1 165 19 19 11 1 0 19 0 3 5 3 0 91 0 3 44 394 1813 66 5 17 216 1 0 4 chain 131190 chr12 133275309 + 98965587 98967049 L1PA5 6144 + 4672 6144 13905 1133 0 10 329 chain 49503 chr12 133275309 + 99013449 99014230 L1PA13 3608 + 2807 3548 29763 298 0 4 19 1 0 30 3 2 33 8 0 81 2 0 62 1 0 4 1 4 12 1 0 35 15 5 44 14 10 16 1 0 22 24 16 14 1 0 6 7 1 10 4 1 12 chain 46517 chr12 133275309 + 99035024 99035611 MER39B 650 + 0 584 30838 171 0 1 6 1 0 256 3 0 150 chain 4379 chr12 133275309 + 99047988 99048040 MER45A 178 + 99 151 89008 52 chain 29773 chr12 133275309 + 99052445 99052762 AluYb8 318 + 0 316 42275 123 1 0 193 chain 3622 chr12 133275309 + 99170306 99170346 MIR 256 + 22 62 94254 40 chain 525493 chr12 133275309 + 99185447 99191844 L1PA7 6471 + 0 6461 2022 116 0 1 62 1 2 137 4 5 84 1 2 17 0 1 238 2 3 11 0 1 84 0 1 56 1 2 441 34 50 214 0 39 405 4 1 168 2 0 191 0 1 308 1 0 908 0 4 283 1 0 321 3 1 53 8 10 45 0 1 7 0 2 241 0 1 438 2 0 321 1 0 347 11 6 68 0 2 13 0 1 153 0 1 268 0 1 160 1 2 162 chain 27949 chr12 133275309 + 99214716 99215076 THE1B-int 1605 + 44 430 44949 67 0 1 62 0 24 144 5 6 82 chain 2620 chr12 133275309 + 99217135 99217163 MLT1J 494 + 428 456 102879 28 chain 10218 chr12 133275309 + 99219155 99219295 MER67D 511 + 27 267 69977 127 0 100 13 chain 39343 chr12 133275309 + 99225418 99225950 MLT2A2 560 + 0 560 35119 126 1 2 164 0 1 106 3 14 89 5 16 32 0 4 6 chain 500507 chr12 133275309 + 99237939 99244026 L1PA6 6164 + 11 6162 3111 438 8 0 118 4 3 217 0 17 185 2 0 37 7 8 148 0 1 368 0 1 531 3 4 29 0 3 214 7 8 40 0 1 300 0 16 492 0 1 979 9 15 463 0 1 35 6 6 505 0 17 619 0 1 108 0 7 215 chain 6864 chr12 133275309 + 99273884 99273991 MER30 238 + 125 232 78087 6 4 0 7 2 0 14 0 6 74 chain 35634 chr12 133275309 + 99291733 99292139 L1PA6 6164 + 4729 5136 37644 175 0 1 231 chain 6146 chr12 133275309 + 99292139 99292210 L1PA6 6164 + 5137 5208 80548 71 chain 83156 chr12 133275309 + 99292538 99293505 L1PA6 6164 + 5193 6160 20991 122 2 1 699 0 1 144 chain 236119 chr12 133275309 + 99312772 99322464 L1PA8A 6298 + 3176 6290 8567 438 1 5 40 3 5 18 0 4 17 4 0 170 6 7 560 0 1 898 0 5 30 337 35 4 1 0 36 10 11 28 0 3 23 8 7 126 6294 0 309 0 1 49 0 2 282 chain 13083 chr12 133275309 + 99414363 99414508 L1PA7 6471 + 5991 6136 64959 145 chain 26089 chr12 133275309 + 99414508 99414817 L1PA7 6471 + 6137 6445 47588 171 2 1 136 chain 31666 chr12 133275309 + 99424729 99425157 MER57A1 433 + 1 433 40610 96 0 1 133 0 5 24 8 3 24 1 2 39 0 2 103 chain 351317 chr12 133275309 + 99455981 99461397 L1PB1 5432 + 17 5404 5898 9 6 0 57 5 0 56 0 1 15 58 63 25 93 93 23 2 0 165 57 56 26 0 5 61 0 1 26 2 1 60 13 14 20 4 3 198 3 0 30 0 14 102 3 5 82 25 31 46 19 0 82 10 13 325 0 1 167 0 3 33 0 14 42 15 0 270 13 16 68 26 28 36 16 20 13 15 15 62 0 5 397 1 0 365 30 32 15 0 1 404 0 7 78 1 0 57 1 0 238 0 6 5 2 0 30 42 28 82 5 7 299 9 24 35 6 7 162 2 0 7 0 2 7 1 4 62 8 5 6 0 3 102 3 2 106 5 2 9 33 0 24 1 0 4 3 2 12 2 0 3 2 0 8 13 11 42 0 2 15 1 0 44 1 0 15 2 0 6 16 6 18 3 1 5 1 0 12 2 0 26 1 0 22 1 0 12 chain 555957 chr12 133275309 + 99463307 99469450 L1PA3long 6157 + 6 6157 362 564 1 2 2107 0 5 1387 0 1 489 0 1 1595 chain 104676 chr12 133275309 + 99491757 99493112 L1PREC2 3366 + 917 2295 17730 256 5 10 127 0 3 199 0 1 4 1 0 172 2 5 326 0 11 133 1 2 129 chain 82916 chr12 133275309 + 99511284 99512484 L1PA11 4918 + 3390 4578 21039 221 0 2 53 1 0 28 1 2 78 0 1 35 1 0 122 1 0 5 0 1 93 15 8 6 0 7 261 20 23 129 9 10 11 3 2 20 4 0 9 3 1 15 14 6 15 1 0 13 2 0 11 chain 29608 chr12 133275309 + 99581608 99581927 AluYb8 318 + 0 318 42472 132 1 0 186 chain 187961 chr12 133275309 + 99615507 99617804 L1PA8 5853 + 3558 5853 10211 408 0 3 987 0 1 21 0 1 27 2 0 3 2 0 378 5 9 125 0 2 41 1 0 45 4 0 69 28 26 36 2 1 19 1 0 93 chain 3508 chr12 133275309 + 99630796 99630837 MSTC 436 + 293 334 95180 41 chain 20709 chr12 133275309 + 99630837 99631182 THE1B 368 + 0 348 55484 6 0 1 162 1 0 11 70 73 95 chain 52228 chr12 133275309 + 99660872 99661539 PABL_B 668 + 2 668 28810 279 1 0 4 1 2 17 7 8 38 2 1 201 2 1 115 chain 73076 chr12 133275309 + 99681872 99682842 L1PB1 5432 + 1568 2546 23305 217 5 14 189 2 0 65 2 0 92 0 8 137 0 1 188 16 10 57 chain 28012 chr12 133275309 + 99715181 99715589 LTR7 482 + 0 482 44847 11 0 1 57 8 46 109 8 40 22 1 0 100 0 2 31 12 14 49 chain 297023 chr12 133275309 + 99715591 99719534 HERVH-int 3825 + 0 3825 6922 29 8 0 286 18 17 49 5 9 144 1 0 11 5 93 18 22 0 17 84 0 24 1 0 82 1 0 1406 0 1 19 0 1 68 310 0 69 0 1 679 2 0 47 9 11 39 0 210 397 6 11 87 chain 29256 chr12 133275309 + 99721327 99721737 LTR7 482 + 1 482 42954 68 8 46 109 0 1 26 1 31 137 12 14 49 chain 460431 chr12 133275309 + 99722820 99728940 L1PA8A 6298 + 35 6135 4117 5 1 0 16 1 0 12 3 0 5 15 7 11 0 2 7 4 0 19 19 10 20 1 0 8 8 7 6 1 0 7 2 1 13 1 0 11 2 0 6 1 0 13 12 10 4 1 0 9 1 0 8 10 5 9 2 0 43 2 0 21 8 0 74 2 0 18 1 0 9 6 4 52 17 24 110 0 3 41 0 1 140 4 0 188 3 2 104 0 4 24 13 15 14 11 13 52 14 10 131 12 13 527 2 1 126 0 2 5 3 2 534 0 4 157 1 0 151 0 3 77 0 4 141 0 3 75 0 7 255 0 5 288 2 0 3 3 0 45 1 2 637 0 1 643 12 12 94 0 7 152 0 5 145 5 8 346 11 18 195 26 9 70 chain 54969 chr12 133275309 + 99741245 99741895 L1PA7 6471 + 5799 6464 27883 49 0 1 14 0 10 436 1 3 121 0 2 29 chain 178031 chr12 133275309 + 99754048 99756803 L1PA13 3608 + 910 3548 10677 136 4 1 6 1 0 99 0 4 239 0 10 99 1 0 393 3 0 6 4 5 32 5 2 19 5 8 74 0 1 136 19 24 272 47 37 185 102 14 244 0 1 109 13 21 41 1 0 32 1 0 22 0 3 47 5 9 32 2 0 29 0 2 28 10 9 6 0 1 14 1 0 29 8 5 47 2 0 5 2 0 16 3 2 22 24 16 14 14 7 10 23 1 12 chain 3475 chr12 133275309 + 99783543 99783598 L1MA5 2750 + 2600 2653 95407 30 3 2 14 1 0 7 chain 335296 chr12 133275309 + 99854311 99858866 L1PB1 5432 + 714 5292 6139 39 23 23 35 0 4 282 1 2 308 0 2 253 7 0 768 0 1 65 8 0 81 0 5 170 23 26 62 1 2 10 0 22 12 0 3 475 2 3 6 1 0 191 0 1 169 3 0 221 3 0 5 0 5 406 1 2 67 6 7 181 3 0 123 0 13 41 2 1 297 17 13 24 6 4 14 17 11 50 1 0 12 6 5 45 1 0 11 chain 3608 chr12 133275309 + 99882576 99882619 L1PB1 5432 + 5236 5279 94348 43 chain 8184 chr12 133275309 + 99882649 99882795 L1PB1 5432 + 5295 5430 74451 27 3 1 9 1 0 14 2 0 24 1 0 9 1 0 14 1 0 11 1 0 14 1 0 7 1 0 5 chain 4159 chr12 133275309 + 99884059 99884138 MADE1 96 - 1 96 90396 31 18 34 30 chain 270949 chr12 133275309 + 99992547 99995754 L1PA6 6164 + 2964 6162 7686 225 0 1 507 1 0 255 0 1 105 0 1 41 5 0 114 0 2 463 1 0 436 1 0 124 1 0 165 2 0 599 1 0 5 6 0 9 0 8 131 4 0 6 chain 522598 chr12 133275309 + 100010759 100016808 L1PA5 6144 + 1 6139 2155 119 0 14 204 2 0 99 11 53 371 0 1 307 9 0 875 8 13 462 0 2 680 0 1 43 4 10 98 0 1 560 2 3 261 0 1 160 0 1 952 1 2 63 1 0 22 1 0 163 1 2 71 0 1 98 0 19 220 0 5 181 chain 25892 chr12 133275309 + 100022080 100022400 L1PB1 5432 + 3976 4296 47879 320 chain 12794 chr12 133275309 + 100022402 100022554 L1PB1 5432 + 4296 4448 65452 152 chain 23336 chr12 133275309 + 100022565 100022867 L1PB1 5432 + 4695 5012 51871 103 0 8 39 0 1 59 0 3 24 4 7 73 chain 59409 chr12 133275309 + 100044691 100045377 L1PA6 6164 + 4095 4781 26533 686 chain 112857 chr12 133275309 + 100045390 100046727 L1PA6 6164 + 4816 6156 16690 554 0 3 783 chain 6968 chr12 133275309 + 100056290 100056376 MSTD 398 + 289 376 77716 34 1 2 51 chain 82228 chr12 133275309 + 100065038 100066102 MER11A 1151 + 0 1151 21195 59 0 99 134 11 7 27 0 2 39 4 1 192 1 0 237 10 9 56 3 0 170 1 0 53 3 2 64 chain 214580 chr12 133275309 + 100066105 100069846 L1PB1 5432 + 1541 5420 9189 139 0 5 258 314 0 104 3 1 100 6 7 343 4 0 89 0 5 250 1 0 11 17 884 53 25 0 54 1 0 118 0 1 5 0 1 5 1 0 130 0 1 371 0 5 10 0 1 53 0 1 4 1 0 11 2 0 48 0 4 15 3 0 17 18 12 115 10 9 24 5 13 102 282 0 94 0 2 16 20 21 47 89 0 14 1 0 24 1 0 9 1 0 9 2 0 3 2 0 10 3 1 50 20 18 43 1 0 15 14 1 30 3 1 4 1 0 14 3 1 23 1 0 21 1 0 9 0 1 5 2 0 14 chain 114619 chr12 133275309 + 100079146 100080826 THE1B-int 1605 + 0 1599 16454 25 3 0 5 1 4 9 2 4 100 0 1 134 8 12 42 0 2 56 0 1 13 32 57 140 1 0 9 1 0 211 0 1 307 3 0 3 1 0 87 0 1 10 113 3 53 1 0 106 1 0 203 chain 28279 chr12 133275309 + 100080831 100081221 THE1B 368 + 0 368 44444 77 32 11 84 2 1 195 chain 19210 chr12 133275309 + 100108659 100108922 L1MA3 4352 + 3831 4093 57338 11 4 5 108 2 1 107 1 0 30 chain 41183 chr12 133275309 + 100146916 100148402 MER4E1 777 + 161 752 33850 4 0 1 280 7 23 74 20 26 9 921 0 38 1 2 100 0 2 32 chain 6562 chr12 133275309 + 100150434 100150529 LTR23 429 + 164 251 79112 72 8 0 15 chain 12079 chr12 133275309 + 100151615 100151804 LTR24C 604 + 29 208 66703 58 25 15 106 chain 2457 chr12 133275309 + 100223669 100223713 MADE1 96 + 55 96 103864 15 7 4 22 chain 338778 chr12 133275309 + 100304601 100308639 L1PA7 6471 + 2402 6461 6092 5 0 3 231 1 0 756 0 6 98 2 0 28 15 2 18 0 4 40 0 4 284 0 3 516 0 7 223 1 4 350 6 7 548 1 0 4 0 1 76 0 4 50 0 2 371 0 1 365 6 5 43 chain 15967 chr12 133275309 + 100356181 100356396 L1PA8 5853 + 5642 5853 61068 39 9 7 52 2 1 19 1 0 93 chain 28262 chr12 133275309 + 100398705 100399070 THE1B 368 + 0 368 44465 40 0 5 127 2 1 120 1 0 75 chain 16745 chr12 133275309 + 100412312 100412570 L1PA8 5853 + 5588 5847 60104 20 10 8 62 12 17 49 4 3 13 1 0 87 chain 123845 chr12 133275309 + 100430118 100431544 LTR12C 1709 + 0 1709 14874 653 0 278 152 0 4 25 1 0 4 4 2 106 0 4 481 chain 128399 chr12 133275309 + 100559198 100560700 LTR12C 1709 + 0 1709 14235 753 0 2 57 0 200 99 1 0 5 3 1 107 0 4 413 0 4 64 chain 74689 chr12 133275309 + 100586772 100587770 L1PB 1623 + 98 1075 22915 4 1 0 10 1 0 5 1 0 52 4 1 18 14 11 70 1 0 131 1 0 16 2 0 71 1 0 148 10 4 273 1 0 163 chain 129609 chr12 133275309 + 100589216 100591062 L1PB1 5432 + 3596 5413 14081 5 0 2 129 1 11 20 0 1 262 1 0 98 2 3 88 1 0 53 0 13 165 0 1 37 18 13 129 3 0 366 1 4 79 14 18 13 24 2 6 1 0 20 1 0 13 16 11 9 2 0 53 2 1 17 1 0 42 1 0 16 1 0 4 2 0 11 9 0 16 8 5 14 2 0 24 1 0 21 1 0 13 1 0 9 chain 31201 chr12 133275309 + 100865283 100865656 L1PA7 6471 + 5432 5810 40972 178 4 7 57 0 2 134 chain 16717 chr12 133275309 + 100874850 100875128 MSTA-int 1630 + 1343 1622 60133 44 0 1 5 8 9 112 45 44 64 chain 8934 chr12 133275309 + 100875165 100875299 MSTA 426 + 33 191 72705 74 17 41 43 chain 12503 chr12 133275309 + 100876939 100877236 L1MA7 2200 + 1821 2089 65982 8 1 0 112 2 1 8 2 1 26 99 73 39 chain 18591 chr12 133275309 + 100881090 100881294 L1PA4 6152 + 5947 6151 58004 204 chain 25565 chr12 133275309 + 100894719 100894992 AluYa5 310 + 35 308 48378 273 chain 15252 chr12 133275309 + 100925487 100925655 L1PA7 6471 + 6302 6470 61978 168 chain 30660 chr12 133275309 + 100998000 100998458 MLT2A1 477 + 0 477 41414 76 7 13 75 9 13 18 2 1 189 40 50 42 chain 94211 chr12 133275309 + 101032432 101033475 L1PA3long 6157 + 5111 6155 19013 572 0 1 471 chain 86227 chr12 133275309 + 101033477 101034598 L1PA8A 6298 + 5166 6291 20383 323 0 2 84 1 2 589 3 4 12 7 6 85 1 2 16 chain 92943 chr12 133275309 + 101065382 101066606 L1MA2 4263 + 1540 2764 19186 430 1 0 219 6 5 134 1 2 188 1 0 36 1 5 85 6 4 116 chain 92760 chr12 133275309 + 101072474 101073566 L1PA6 6164 + 5038 6149 19223 270 2 0 9 0 8 34 0 1 345 0 2 53 0 10 379 chain 19923 chr12 133275309 + 101082052 101082351 THE1B 368 + 1 306 56490 168 1 0 21 3 5 5 1 0 9 1 5 16 1 0 12 2 1 44 0 4 15 chain 92906 chr12 133275309 + 101089679 101090740 L1PA5 6144 + 5065 6126 19193 9 1 0 4 0 1 904 0 1 10 1 0 132 chain 6216 chr12 133275309 + 101100965 101101041 MER58A 224 + 42 118 80295 76 chain 9510 chr12 133275309 + 101139609 101139723 MER87B 500 + 0 114 71449 114 chain 23733 chr12 133275309 + 101145761 101146026 HERVH-int 3825 + 1854 2119 51224 265 chain 555057 chr12 133275309 + 101146043 101152064 L1HS 6032 + 0 6032 404 710 0 7 2424 0 4 2887 chain 281183 chr12 133275309 + 101152064 101155141 L1PA2 6032 + 2952 6032 7385 103 1 2 2121 0 1 671 0 1 181 chain 29209 chr12 133275309 + 101162362 101162746 L1PA16 3655 + 3211 3590 43032 79 2 0 126 6 5 48 0 1 108 3 0 12 chain 117645 chr12 133275309 + 101213937 101215470 THE1B-int 1605 + 24 1598 15951 79 5 8 321 0 25 224 3 5 19 1 2 202 14 15 218 0 4 201 1 2 84 1 0 86 0 5 74 chain 4729 chr12 133275309 + 101236539 101236607 MER53 195 + 108 175 87082 9 2 1 57 chain 32814 chr12 133275309 + 101271730 101272279 L1MA4 2864 + 1586 2146 39658 108 5 0 51 0 1 83 7 6 32 1 0 49 6 10 19 2 4 32 7 16 14 8 12 4 1 0 55 12 14 5 2 0 17 1 0 28 chain 30080 chr12 133275309 + 101352484 101352821 L1PA3long 6157 + 5819 6156 41977 197 0 1 135 1 0 4 chain 357122 chr12 133275309 + 101388254 101392194 L1PA3long 6157 + 2194 6149 5832 175 0 10 530 0 5 204 0 3 574 1 0 1612 1 0 584 1 0 258 chain 122758 chr12 133275309 + 101412529 101414047 L1PA5 6144 + 4272 5829 15068 79 0 31 346 0 1 702 0 7 391 chain 8372 chr12 133275309 + 101438574 101438750 L1PB1 5432 + 5238 5430 73964 43 1 0 12 31 53 24 6 5 17 1 0 13 1 0 17 1 0 4 1 0 4 chain 25691 chr12 133275309 + 101514630 101515013 L1PA17 2846 + 2325 2693 48186 174 4 0 15 12 7 12 1 0 59 2 0 8 1 0 32 1 0 18 7 6 37 chain 4315 chr12 133275309 + 101528552 101528603 MIR 256 + 126 177 89393 51 chain 66267 chr12 133275309 + 101558489 101559256 L1PA5 6144 + 5376 6143 24887 163 0 1 209 1 0 394 chain 107699 chr12 133275309 + 101586113 101587285 L1PA2 6032 + 4859 6029 17360 1160 2 0 10 chain 3538 chr12 133275309 + 101671102 101671139 MER3 215 - 3 40 94956 37 chain 8149 chr12 133275309 + 101779813 101779904 5S 121 + 0 91 74521 91 chain 7447 chr12 133275309 + 101789813 101789918 U13_ 108 + 0 108 76250 79 5 8 21 chain 21596 chr12 133275309 + 101869294 101870625 Tigger1 2417 + 1176 1917 54365 28 14 15 75 6 11 79 0 3 19 0 3 33 991 389 86 chain 20115 chr12 133275309 + 101872251 101872522 LTR8 732 + 0 282 56241 15 0 1 11 1 12 113 7 6 124 chain 5248 chr12 133275309 + 102121203 102121384 MER58B 340 + 0 197 84457 16 7 26 14 12 8 11 63 64 58 chain 158718 chr12 133275309 + 102145964 102147725 L1PA3long 6157 + 4394 6157 11829 247 2 1 955 0 2 334 0 1 223 chain 50271 chr12 133275309 + 102155387 102156127 LTR17 781 + 0 769 29458 203 18 8 37 8 9 70 1 0 45 0 1 17 38 53 20 29 30 213 0 22 41 chain 245623 chr12 133275309 + 102238500 102241399 L1PA6 6164 + 3251 6162 8339 19 2 1 29 1 0 209 4 7 157 0 2 23 2 0 53 0 1 1304 0 1 4 1 0 84 0 8 39 5 6 476 0 1 487 chain 117359 chr12 133275309 + 102254774 102256200 L1PA7 6471 + 5024 6459 15989 307 0 7 9 9 3 109 0 1 26 3 0 21 0 3 38 0 1 23 0 1 49 1 2 514 0 1 86 0 3 231 chain 22247 chr12 133275309 + 102289671 102290037 THE1B 368 + 0 368 53479 44 0 15 49 4 3 9 2 1 6 11 0 45 2 1 25 2 0 85 22 25 60 chain 123225 chr12 133275309 + 102290037 102291609 THE1B-int 1605 + 0 1600 14991 246 0 1 11 0 1 76 0 1 72 0 1 16 0 26 5 1 0 542 12 11 591 chain 25418 chr12 133275309 + 102291614 102291972 THE1B 368 + 0 368 48604 44 11 26 47 1 0 55 2 1 25 2 0 22 1 0 148 chain 4920 chr12 133275309 + 102307410 102307500 MER41-int 2638 + 86 170 86056 17 18 9 32 0 3 23 chain 89042 chr12 133275309 + 102314779 102315956 MER57-int 2662 + 526 1760 19850 177 38 38 130 0 8 149 0 3 44 0 33 258 0 2 36 1 0 90 4 0 107 0 16 143 chain 46489 chr12 133275309 + 102325957 102326570 THE1C-int 1605 + 0 628 30852 14 2 1 92 0 3 219 0 6 97 13 20 176 chain 4774 chr12 133275309 + 102358660 102358719 MLT1I 406 + 83 142 86836 59 chain 4495 chr12 133275309 + 102367924 102367979 MER77B 728 + 273 328 88363 55 chain 13012 chr12 133275309 + 102390335 102390491 L1PA7 6471 + 6314 6470 65099 156 chain 95102 chr12 133275309 + 102447714 102449543 L1PA7 6471 + 5252 6461 18896 320 0 1 50 642 14 42 23 24 479 0 3 135 0 1 97 0 9 8 7 0 26 chain 56772 chr12 133275309 + 102448089 102448702 L1HS 6032 + 5418 6032 27335 17 0 1 596 chain 12381 chr12 133275309 + 102451766 102451935 THE1C 375 + 6 184 66176 49 7 16 113 chain 14338 chr12 133275309 + 102500013 102500300 L1MA7 2200 + 1668 1977 63137 11 11 6 7 0 1 26 24 46 13 0 3 18 14 17 13 1 0 112 11 10 26 chain 19487 chr12 133275309 + 102507439 102507799 THE1B 368 + 0 367 57047 105 16 18 46 65 71 66 7 6 55 chain 18901 chr12 133275309 + 102563810 102564020 L1PA5 6144 + 5934 6144 57636 210 chain 6729 chr12 133275309 + 102572057 102572207 MSTB2 466 + 73 248 78545 58 49 50 11 0 20 26 0 4 6 chain 24880 chr12 133275309 + 102575700 102576032 THE1A 353 + 1 333 49474 80 3 4 21 5 4 223 chain 48084 chr12 133275309 + 102579482 102580046 L1PA5 6144 + 5584 6144 30265 292 4 1 129 0 1 131 2 0 6 chain 75546 chr12 133275309 + 102582641 102583802 L1PA13 3608 + 2377 3548 22707 31 6 11 120 7 20 84 4 0 78 0 1 73 13 24 154 2 0 12 1 2 41 0 1 90 10 9 31 2 1 113 2 0 62 1 0 57 6 4 36 6 9 7 2 0 18 1 0 16 1 4 11 16 7 14 1 0 6 1 2 9 4 1 12 chain 86540 chr12 133275309 + 102608491 102609515 L1PA7 6471 + 5434 6467 20318 180 0 3 86 0 1 101 0 3 648 0 2 9 chain 242680 chr12 133275309 + 102697342 102700908 L1MA2 4263 + 504 4114 8406 154 21 30 98 0 8 185 9 10 49 6 7 25 0 1 69 4 7 77 5 8 104 22 14 38 15 9 52 1 4 86 4 0 82 8 11 94 3 2 59 0 1 183 1 0 4 1 0 60 1 2 175 0 1 32 4 3 181 0 2 83 15 18 103 2 0 5 8 7 7 0 1 42 5 0 7 0 3 5 1 0 53 2 0 8 0 2 71 5 19 37 0 1 190 0 7 18 0 2 11 0 1 423 0 5 6 1 0 18 5 2 77 1 0 126 19 17 66 0 6 26 73 71 63 0 1 4 12 15 11 0 1 35 1 0 9 chain 3310 chr12 133275309 + 102727976 102728032 MIR 256 + 168 232 96921 16 6 14 34 chain 27658 chr12 133275309 + 102742669 102743011 THE1A 353 + 12 353 45384 98 1 0 243 chain 7983 chr12 133275309 + 102760505 102760683 MER58A 224 + 39 224 74918 44 14 0 7 53 74 60 chain 3734 chr12 133275309 + 102812586 102812686 LTR33 499 + 115 217 93366 24 44 46 32 chain 490574 chr12 133275309 + 102856342 102861912 L1PA5 6144 + 488 6076 3407 652 0 5 263 1 6 289 1 0 449 1 0 534 0 3 513 1 0 133 0 1 345 0 1 373 5 0 399 8 3 200 1 2 638 0 4 670 0 2 54 0 9 40 chain 12829 chr12 133275309 + 103021818 103022087 THE1C 375 + 0 283 65394 78 0 13 36 8 12 41 84 81 22 chain 207463 chr12 133275309 + 103058441 103061011 L1PA8 5853 + 2298 4885 9445 183 0 4 61 3 4 252 0 4 185 0 1 95 1 0 399 0 1 107 8 3 20 0 1 436 0 4 113 0 2 359 0 1 39 1 2 131 0 1 152 11 13 14 chain 440238 chr12 133275309 + 103062926 103068480 HERVL-int 5654 + 78 5654 4572 202 33 40 252 1 2 98 0 1 163 1 2 218 5 9 58 0 1 207 0 1 4 6 5 72 7 6 487 0 2 123 0 1 1060 10 6 495 0 1 4 1 0 184 0 1 146 0 5 16 3 5 107 1 0 161 0 1 389 0 6 94 4 0 116 32 15 130 18 28 426 0 2 4 1 0 32 0 5 20 6 4 34 0 2 123 chain 26440 chr12 133275309 + 103068480 103069033 MLT2A2 560 + 0 560 47068 169 65 63 70 3 112 44 0 5 38 122 17 42 chain 12727 chr12 133275309 + 103102475 103102669 MER107 203 + 3 203 65569 84 14 16 38 5 9 53 chain 5026 chr12 133275309 + 103113529 103113603 MER20 218 + 39 117 85543 39 5 9 30 chain 42060 chr12 133275309 + 103168654 103169154 L1PA7 6471 + 5954 6454 33318 500 chain 108996 chr12 133275309 + 103218926 103220402 L1PA7 6471 + 310 6466 17182 101 0 1 104 71 4736 369 8 7 508 0 1 173 0 14 142 chain 55779 chr12 133275309 + 103262647 103263306 L1PA6 6164 + 5499 6160 27635 332 0 1 139 4 5 184 chain 54600 chr12 133275309 + 103287102 103287716 L1PA4 6152 + 5539 6152 28008 353 1 0 260 chain 110100 chr12 133275309 + 103297375 103298605 L1PA5 6144 + 3403 4632 17065 106 2 0 5 0 1 1117 chain 18498 chr12 133275309 + 103309224 103309531 Tigger2 2703 + 2326 2648 58107 83 1 4 48 2 0 6 3 12 94 0 4 7 40 41 23 chain 86356 chr12 133275309 + 103321078 103322020 L1PA3long 6157 + 5210 6152 20350 942 chain 14533 chr12 133275309 + 103329326 103329546 L1PA8 5853 + 5637 5853 62865 41 5 4 8 1 0 50 2 1 16 7 6 90 chain 4429 chr12 133275309 + 103341905 103342012 MLT2B2 565 + 454 561 88747 34 46 46 27 chain 31502 chr12 133275309 + 103356938 103357291 L1PA3long 6157 + 5789 6142 40735 109 1 0 114 1 2 128 chain 395296 chr12 133275309 + 103362067 103367440 L1PB1 5432 + 12 5427 5232 7 1 0 387 2 0 40 5 4 38 0 3 6 2 12 91 1 4 78 10 9 63 15 13 7 0 2 53 0 1 456 0 4 42 0 2 69 1 5 173 0 1 35 0 2 606 14 16 58 0 1 158 9 12 28 2 0 9 0 1 9 0 1 68 0 5 27 0 1 4 4 3 206 2 1 53 0 3 95 25 31 507 6 5 178 0 1 4 9 8 27 0 2 214 0 13 647 0 1 58 0 3 115 0 8 288 6 11 9 1 0 24 1 0 9 1 0 11 18 12 50 2 1 16 1 0 53 30 18 19 2 0 4 1 0 10 9 7 22 1 0 21 1 0 13 1 0 18 2 0 5 chain 52510 chr12 133275309 + 103369752 103370591 L1PA15 4387 + 3544 4357 28729 268 2 0 15 4 0 64 3 1 41 1 0 66 1 2 19 4 8 72 7 6 25 11 10 17 5 3 6 2 0 18 1 0 27 10 5 50 6 3 44 3 1 14 5 0 28 chain 33534 chr12 133275309 + 103376110 103376566 L1PA8 5853 + 5398 5847 39054 115 0 2 49 1 0 45 2 0 15 2 0 55 1 0 10 1 0 45 8 7 19 2 1 86 chain 531704 chr12 133275309 + 103424376 103431106 L1PA7 6471 + 0 6467 1764 258 5 10 93 1 14 7 12 0 26 17 0 204 1 2 471 0 1 177 275 0 130 0 3 274 9 10 167 2 1 204 0 4 499 0 1 76 15 0 69 26 21 110 0 1 263 0 4 338 0 6 212 0 1 89 0 1 86 2 0 100 0 1 1411 1 0 17 8 7 79 0 10 161 1 0 815 1 15 18 chain 2416 chr12 133275309 + 103425654 103425684 L1PA7 6471 + 1268 1298 104089 30 chain 547984 chr12 133275309 + 103434388 103440411 L1PA2 6032 + 1 6022 862 2371 4 1 525 0 1 488 2 0 12 0 1 1507 0 1 1114 chain 93154 chr12 133275309 + 103446129 103447393 L1PB1 5432 + 1070 3414 19163 166 1 3 50 4 6 92 16 24 100 15 15 97 0 1 57 1 0 390 0 1 172 2 1069 101 chain 95757 chr12 133275309 + 103447399 103448597 L1PB1 5432 + 3421 4625 18803 308 1 0 76 0 1 95 0 1 60 1 0 136 0 2 371 0 4 150 chain 18900 chr12 133275309 + 103448605 103448866 L1PB1 5432 + 4635 4889 57637 177 2 1 65 6 0 11 chain 17523 chr12 133275309 + 103448876 103449168 L1PB1 5432 + 4897 5142 59212 201 62 16 24 1 0 4 chain 4605 chr12 133275309 + 103449171 103449254 L1PB1 5432 + 5144 5220 87774 12 2 0 3 2 0 9 6 4 40 1 0 8 chain 3597 chr12 133275309 + 103449274 103449317 L1PB1 5432 + 5238 5281 94450 43 chain 7053 chr12 133275309 + 103449318 103449479 L1PB1 5432 + 5281 5422 77427 15 3 0 8 13 4 18 26 21 23 1 0 22 1 0 12 1 0 18 chain 46641 chr12 133275309 + 103452510 103453036 L1PA5 6144 + 5618 6144 30798 526 chain 12941 chr12 133275309 + 103506490 103506653 Tigger3a 397 + 143 336 65189 122 0 30 41 chain 48320 chr12 133275309 + 103509753 103510497 L1PB1 5432 + 4714 5422 30175 90 1 0 71 0 1 227 5 2 10 1 0 23 1 0 4 22 17 9 2 0 52 6 5 13 1 0 17 2 0 26 1 0 13 25 14 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 chain 2867 chr12 133275309 + 103628375 103628419 MER96B 391 - 33 75 101087 21 3 1 20 chain 4196 chr12 133275309 + 103636371 103636429 LTR41 747 + 670 727 90149 16 1 0 41 chain 66104 chr12 133275309 + 103643806 103644530 SVA_D 2077 + 1190 2061 24935 118 0 147 606 chain 69728 chr12 133275309 + 103875075 103876155 L1PA15 4387 + 3295 4287 24062 13 88 4 355 1 2 67 8 11 65 2 0 15 4 0 64 3 1 40 1 0 60 0 5 107 2 1 17 4 8 36 0 1 18 1 0 5 0 1 16 4 0 10 1 0 50 11 8 12 chain 4941 chr12 133275309 + 104003835 104003890 LTR45C 530 + 10 65 85928 55 chain 194033 chr12 133275309 + 104003945 104006128 L1PA5 6144 + 3697 5879 9926 769 6 5 1408 chain 27762 chr12 133275309 + 104007716 104008069 THE1A 353 + 0 353 45236 15 2 0 32 0 1 47 1 0 97 0 2 159 chain 123812 chr12 133275309 + 104008069 104009639 THE1A-int 1579 + 0 1574 14878 305 0 1 188 3 2 158 0 3 27 1 2 409 2 4 77 2 3 114 15 18 79 6 0 184 chain 22913 chr12 133275309 + 104009644 104009996 THE1A 353 + 0 353 52491 15 2 0 32 0 1 42 6 5 76 21 23 39 9 10 58 0 1 4 1 0 47 chain 527126 chr12 133275309 + 104034170 104040303 L1PA6 6164 + 0 6162 1950 459 0 18 7 19 0 180 1 0 4 0 1 1231 0 9 742 1 0 538 0 1 50 0 4 87 0 15 390 6 7 925 0 1 1165 0 1 92 2 0 86 4 5 144 chain 15864 chr12 133275309 + 104062912 104063179 MER1B 344 + 103 344 61210 26 5 6 127 2 0 5 39 14 63 chain 4906 chr12 133275309 + 104111172 104111232 Charlie1a 1436 + 1326 1386 86130 60 chain 8667 chr12 133275309 + 104125235 104125325 5S 121 + 0 90 73302 90 chain 4776 chr12 133275309 + 104168530 104168581 LTR71A 459 + 0 51 86823 51 chain 20306 chr12 133275309 + 104238151 104238434 HUERS-P3b-int 2065 + 584 866 56012 12 0 6 85 4 0 87 1 0 54 1 0 27 1 0 11 chain 25622 chr12 133275309 + 104332477 104332774 AluSp 311 + 10 307 48279 297 chain 3606 chr12 133275309 + 104368398 104368438 MIR 256 + 47 87 94370 40 chain 6116 chr12 133275309 + 104527238 104527315 MLT1B 390 + 295 374 80676 33 0 2 44 chain 181844 chr12 133275309 + 104572831 104574863 L1PA4 6152 + 4106 6152 10505 245 0 4 78 0 1 1257 0 2 308 2 3 34 0 1 102 0 5 6 chain 19859 chr12 133275309 + 104605359 104605603 AluYk4 311 + 62 306 56600 244 chain 30338 chr12 133275309 + 104608255 104608632 MER83 447 + 28 405 41722 377 chain 26457 chr12 133275309 + 104613389 104613770 MSTA 426 + 0 426 47044 22 9 4 73 0 1 8 0 21 5 0 3 99 2 0 60 1 21 20 5 12 77 chain 14310 chr12 133275309 + 104637336 104637501 L1PA4 6152 + 5991 6152 63182 155 4 0 6 chain 3399 chr12 133275309 + 104817946 104818000 L1MA8 2339 + 2215 2266 96072 17 2 0 24 1 0 10 chain 181223 chr12 133275309 + 104825012 104827856 HUERS-P2-int 2744 + 2 2742 10539 14 13 4 11 4 0 23 1 0 32 2 0 5 1 0 53 2 0 16 36 30 73 40 32 20 51 27 91 1 0 8 1 0 22 1 0 274 218 218 61 1 0 367 0 1 262 0 3 343 12 2 99 1 0 158 15 0 11 4 0 108 1 0 4 1 0 48 0 12 7 13 0 18 0 3 82 5 0 37 2 1 11 1 0 4 6 4 15 1 0 17 0 3 20 3 0 32 2 1 9 2 0 5 2 0 12 2 0 27 chain 6815 chr12 133275309 + 104846825 104847128 L1MCc 1008 + 338 631 78261 35 21 15 11 13 11 28 146 144 49 chain 3482 chr12 133275309 + 104847736 104847777 MER6B 211 - 1 42 95372 41 chain 57760 chr12 133275309 + 104857365 104858010 L1PA5 6144 + 5496 6143 27031 242 2 0 181 0 4 220 chain 16127 chr12 133275309 + 104860178 104860398 L1PA8 5853 + 5631 5853 60859 32 0 3 13 1 0 9 1 3 49 2 1 19 1 0 93 chain 122118 chr12 133275309 + 104891648 104893721 L1MA2 4263 + 2373 4114 15177 15 5 4 161 0 4 87 6 4 35 7 5 9 0 1 44 321 1 171 22 21 103 4 7 23 1 3 150 3 7 97 1 0 4 1 2 243 2 0 10 13 9 69 1 0 134 13 10 107 2 0 6 1 2 37 1 0 6 2 1 93 7 0 26 0 1 19 1 0 10 chain 144498 chr12 133275309 + 104916397 104917984 L1PA3long 6157 + 4569 6157 12730 1303 0 3 10 0 1 130 1 0 136 2 0 5 chain 6011 chr12 133275309 + 104932267 104932343 L1PB3 3668 + 2388 2464 81036 76 chain 9675 chr12 133275309 + 104941745 104941877 L1PA8 5853 + 5723 5853 71107 17 2 1 19 1 0 93 chain 28603 chr12 133275309 + 104943718 104944044 LTR17 781 + 0 326 43947 326 chain 5152 chr12 133275309 + 104951759 104951839 MADE1 96 + 0 96 84901 49 11 27 20 chain 9287 chr12 133275309 + 104982481 104982595 MSTA 426 + 7 121 71936 114 chain 5741 chr12 133275309 + 105018266 105018355 Tigger3c 601 + 461 555 82176 59 1 3 14 2 5 13 chain 48310 chr12 133275309 + 105090281 105090903 LTR9B 643 + 0 637 30178 93 0 15 99 4 3 123 12 10 128 2 0 32 0 4 113 0 1 16 chain 8403 chr12 133275309 + 105125216 105125393 Tigger2b_Pri 1066 + 36 208 73896 20 1 0 29 44 41 23 7 6 53 chain 24757 chr12 133275309 + 105147628 105147918 AluSp 311 + 5 295 49648 290 chain 4571 chr12 133275309 + 105245696 105245763 L1MB7 1623 + 1365 1429 87959 5 1 0 53 2 0 6 chain 474053 chr12 133275309 + 105245853 105251159 L1PA4 6152 + 54 5347 3762 526 1 0 256 17 0 135 0 1 1349 0 1 1449 0 1 404 0 1 1131 0 1 38 chain 85157 chr12 133275309 + 105274865 105275804 L1PA3long 6157 + 5218 6157 20592 939 chain 19907 chr12 133275309 + 105298440 105298730 THE1B 368 + 0 299 56519 168 2 1 29 10 11 4 0 1 14 7 15 56 chain 81539 chr12 133275309 + 105299227 105300302 MER11B 1079 + 0 1079 21329 170 22 4 137 17 37 189 0 1 4 6 5 16 10 9 198 2 4 105 0 1 36 1 2 133 1 0 28 chain 11742 chr12 133275309 + 105301519 105301823 HERVK11-int 2540 + 679 929 67328 58 5 0 14 14 8 4 1 0 9 2 0 21 77 41 44 3 0 12 6 5 34 chain 85639 chr12 133275309 + 105311150 105312382 HERVK11-int 2540 + 1062 2235 20514 59 19 18 38 1 0 12 11 8 12 14 4 13 1 0 27 12 1 31 25 5 429 17 12 104 1 0 183 13 12 72 12 7 126 chain 88222 chr12 133275309 + 105313370 105314445 MER11B 1079 + 0 1079 19999 770 2 4 13 1 3 86 0 1 173 1 0 29 chain 3452 chr12 133275309 + 105319159 105319198 LTR24B 570 + 531 570 95640 39 chain 11992 chr12 133275309 + 105392051 105392419 MLT1C 463 + 57 439 66848 50 0 1 17 6 0 21 29 33 12 153 168 80 chain 28221 chr12 133275309 + 105398346 105398735 THE1C 375 + 0 375 44534 26 0 1 98 3 0 55 0 1 12 11 5 152 7 0 25 chain 3453 chr12 133275309 + 105444548 105444586 MER110A 451 + 404 442 95627 38 chain 3437 chr12 133275309 + 105445289 105445492 LTR37A 408 + 71 285 95765 29 147 158 27 chain 19930 chr12 133275309 + 105453893 105454248 THE1B 368 + 7 368 56477 102 2 5 6 2 0 49 69 75 62 8 7 55 chain 21413 chr12 133275309 + 105540735 105541090 THE1D 372 + 0 359 54621 53 23 15 53 7 11 52 0 2 5 4 0 10 18 20 18 0 6 11 0 2 101 chain 558480 chr12 133275309 + 105628261 105634288 L1PA2 6032 + 0 6032 226 2986 4 0 1171 0 9 1866 chain 21439 chr12 133275309 + 105657423 105657772 THE1C 375 + 0 336 54596 14 2 0 71 0 1 21 7 8 71 0 1 41 13 9 50 23 13 36 chain 3461 chr12 133275309 + 105661848 105661887 MADE1 96 + 57 96 95538 39 chain 446155 chr12 133275309 + 105679383 105684960 HERVL-int 5654 + 0 5654 4457 185 0 1 13 0 14 211 8 9 37 13 1 279 0 5 6 35 13 40 7 22 328 9 0 439 11 8 68 0 3 96 1 0 53 0 4 678 0 12 165 1 0 4 0 1 310 0 23 50 0 3 457 0 1 293 3 0 52 0 1 43 16 19 237 1 0 4 0 1 34 0 1 870 0 40 520 chain 32613 chr12 133275309 + 105684960 105685387 MLT2A1 477 + 0 476 39851 139 1 2 27 2 6 67 1 2 82 1 0 60 0 44 47 chain 544717 chr12 133275309 + 105776066 105782085 L1PA3long 6157 + 0 6147 1043 152 0 12 88 4 0 10 9 0 102 0 1 403 8 136 1071 0 1 721 1 0 3450 chain 6461 chr12 133275309 + 105802580 105802661 Tigger3b 1229 + 23 104 79480 81 chain 149288 chr12 133275309 + 105825749 105827431 L1PA4 6152 + 4463 6146 12403 519 0 1 1163 chain 28552 chr12 133275309 + 105827597 105827925 L1PA6 6164 + 5835 6161 44029 319 2 0 7 chain 13506 chr12 133275309 + 105859381 105859763 THE1B 368 + 25 368 64308 82 9 11 12 0 5 42 136 75 30 32 47 39 chain 45450 chr12 133275309 + 105873321 105873805 SVA_F 1814 + 1326 1812 31338 104 0 2 380 chain 95430 chr12 133275309 + 105873848 105875465 L1MA3 4352 + 2407 4348 18853 182 1 0 48 27 339 68 2 3 68 35 36 241 0 26 436 2 8 19 18 0 68 5 8 22 24 36 25 19 18 34 74 42 45 1 0 23 14 16 30 15 13 19 14 34 7 2 0 9 2 0 18 chain 19626 chr12 133275309 + 105901810 105902168 THE1C 375 + 10 365 56883 77 7 8 84 83 80 91 1 0 15 chain 14945 chr12 133275309 + 105997137 105997416 L1PB1 5432 + 5158 5413 62325 9 2 0 53 2 1 16 1 0 44 1 0 15 1 0 4 18 8 19 8 5 11 6 4 23 1 0 21 1 0 13 1 0 9 chain 3343 chr12 133275309 + 106011481 106011519 L1MB2 1706 + 1156 1194 96659 38 chain 23915 chr12 133275309 + 106011519 106011939 MSTA 426 + 0 426 50923 26 0 1 104 11 31 8 24 0 44 0 2 11 32 31 39 14 22 107 chain 25890 chr12 133275309 + 106103656 106104018 THE1C 375 + 0 364 47881 225 5 6 98 16 17 18 chain 470930 chr12 133275309 + 106163604 106169605 L1PA8 5853 + 108 5853 3829 143 7 1 53 0 4 32 15 10 237 0 1 347 254 0 479 2 0 112 1 2 484 6 5 136 0 4 404 6 5 59 0 3 48 0 1 34 0 1 222 0 4 1113 1 0 163 6 5 787 0 2 553 1 0 48 2 0 72 4 10 5 7 0 39 35 33 84 chain 109811 chr12 133275309 + 106202799 106204022 L1PA4 6152 + 4933 6151 17096 1212 5 0 6 chain 12110 chr12 133275309 + 106204031 106204227 THE1D 372 + 167 371 66647 13 37 45 146 chain 3332 chr12 133275309 + 106233537 106233664 LTR12C 1709 + 1010 1059 96747 39 78 0 10 chain 106574 chr12 133275309 + 106264084 106265616 L1MA2 4263 + 2581 4105 17485 63 6 4 57 11 21 41 7 4 140 0 1 569 1 2 83 1 0 7 0 1 10 7 3 75 1 0 140 11 8 19 0 1 128 1 0 6 2 1 38 7 8 47 15 8 39 chain 4022 chr12 133275309 + 106329608 106329659 MER5B 177 - 125 177 91297 30 0 1 21 chain 7377 chr12 133275309 + 106332143 106332234 MER63D 473 + 52 147 76453 18 0 4 73 chain 16428 chr12 133275309 + 106356407 106356590 AluYb8 318 + 135 318 60478 183 chain 75755 chr12 133275309 + 106371117 106371949 L1PA3long 6157 + 5325 6157 22642 832 chain 459478 chr12 133275309 + 106397865 106403048 L1PA4 6152 + 6 5229 4143 60 2 1 61 0 14 438 1 0 653 0 2 126 0 4 646 7 0 103 0 1 478 0 9 658 0 2 274 0 12 392 0 1 417 0 2 379 0 2 488 chain 13320 chr12 133275309 + 106497034 106497252 MER30 238 + 25 238 64588 61 2 0 20 19 19 74 11 8 31 chain 27466 chr12 133275309 + 106596107 106596472 THE1B 368 + 0 368 45616 15 2 0 25 0 5 127 2 1 25 0 2 96 1 0 72 chain 3566 chr12 133275309 + 106766192 106766233 MER5B 177 + 107 148 94687 41 chain 13066 chr12 133275309 + 106848939 106849264 L1MA3 4352 + 4057 4352 64995 30 66 32 41 1 5 30 4 3 44 1 10 6 2 0 24 11 9 23 1 0 19 5 2 17 chain 4319 chr12 133275309 + 106849569 106849623 MER5A1 166 + 94 148 89372 54 chain 5374 chr12 133275309 + 106850818 106850883 Tigger4a 237 + 33 98 83828 65 chain 22225 chr12 133275309 + 106984535 106984897 THE1B 368 + 0 368 53515 108 8 9 60 61 66 125 chain 27688 chr12 133275309 + 107002671 107003037 THE1B 368 + 0 368 45334 64 4 6 98 1 0 8 1 0 123 0 2 67 chain 16050 chr12 133275309 + 107010746 107011045 Tigger1 2417 + 218 518 60957 40 69 74 16 10 0 39 0 2 103 0 4 22 chain 6966 chr12 133275309 + 107013676 107013944 MER33 330 + 17 282 77722 11 1 0 22 0 1 13 157 154 64 chain 24831 chr12 133275309 + 107047412 107047762 THE1C 375 + 0 347 49540 15 2 0 158 6 9 18 3 0 62 1 0 85 chain 308094 chr12 133275309 + 107082035 107085824 L1PA8 5853 + 2028 5850 6656 110 14 12 124 0 4 120 0 1 31 0 1 36 1 2 419 1 0 70 1 4 45 0 1 335 2 0 36 0 2 112 0 1 395 0 4 161 15 23 293 1 0 193 0 10 436 0 3 47 0 3 22 2 3 79 11 12 386 2 1 42 3 1 9 0 3 62 1 0 4 11 10 44 2 1 19 2 1 16 1 0 73 chain 29756 chr12 133275309 + 107095648 107096024 THE1C 375 + 0 375 42298 349 1 0 26 chain 109450 chr12 133275309 + 107096041 107097581 THE1C-int 1605 + 23 1589 17122 88 0 54 122 5 8 42 0 29 79 86 11 296 0 9 39 0 2 42 8 14 158 0 1 192 7 8 182 11 7 183 chain 3886 chr12 133275309 + 107101028 107101072 LTR41 747 + 4 48 92241 44 chain 34703 chr12 133275309 + 107107522 107107964 MER4A1 472 + 8 472 38221 4 1 0 31 1 0 184 0 21 122 0 3 99 chain 47583 chr12 133275309 + 107109886 107110519 MER41B 635 + 0 635 30449 95 1 0 31 0 1 158 0 2 136 0 1 27 19 18 166 chain 31926 chr12 133275309 + 107123630 107124052 MLT2A1 477 + 4 477 40391 50 1 14 62 0 1 37 5 2 4 0 1 207 1 40 55 chain 4114 chr12 133275309 + 107124152 107124202 L1MA7 2200 + 2001 2051 90681 50 chain 22848 chr12 133275309 + 107157570 107157920 THE1D 372 + 4 372 52586 57 4 14 91 24 27 45 11 17 80 1 0 37 chain 24702 chr12 133275309 + 107185424 107185756 MER65C 458 + 124 458 49732 107 1 0 24 9 13 46 1 0 144 chain 9138 chr12 133275309 + 107185799 107185931 MLT1B 390 + 238 369 72264 13 7 6 112 chain 447444 chr12 133275309 + 107186191 107191193 L1PA4 6152 + 1112 6143 4423 124 0 1 1138 1 0 4 0 1 111 0 9 786 0 1 137 1 0 121 0 1 1731 0 1 20 0 4 116 0 1 145 0 12 567 chain 53858 chr12 133275309 + 107209702 107210402 LTR12 884 + 0 884 28267 25 1 0 53 0 41 153 0 41 21 32 10 24 0 22 205 0 103 186 chain 139186 chr12 133275309 + 107212630 107214258 L1PA5 6144 + 4527 6143 13171 107 0 2 450 22 7 903 0 1 146 chain 55893 chr12 133275309 + 107214260 107214938 HERV9-int 5642 + 2181 2841 27592 166 20 1 210 0 1 282 chain 61013 chr12 133275309 + 107217286 107218056 LTR12 884 + 0 876 26102 24 1 0 31 0 107 210 0 22 244 35 13 225 chain 44980 chr12 133275309 + 107293029 107293572 MLT2A2 560 + 0 558 31595 367 1 5 27 5 16 143 chain 29460 chr12 133275309 + 107382574 107382911 L1PA7 6471 + 6124 6461 42656 337 chain 2661 chr12 133275309 + 107406108 107406220 MIR 256 + 117 223 102656 17 70 64 25 chain 27911 chr12 133275309 + 107418011 107418457 MLT2A2 560 + 0 560 45015 88 0 3 76 13 11 15 41 40 69 2 111 42 1 6 99 chain 29675 chr12 133275309 + 107433003 107433324 AluYb8 318 + 0 316 42398 126 5 0 190 chain 8194 chr12 133275309 + 107486043 107486158 MSTB2 466 + 0 131 74426 15 4 20 96 chain 2825 chr12 133275309 + 107486332 107486367 MER58A 224 + 49 83 101442 4 1 0 30 chain 21614 chr12 133275309 + 107513282 107513658 THE1D 372 + 0 372 54334 29 9 12 14 9 0 17 6 7 82 49 50 161 chain 93549 chr12 133275309 + 107517702 107518762 L1PA5 6144 + 5071 6144 19102 294 0 4 415 0 8 279 1 2 71 chain 6512 chr12 133275309 + 107650810 107650890 HY3 101 + 20 100 79299 80 chain 12162 chr12 133275309 + 107664980 107665169 L1PA8 5853 + 5596 5780 66543 12 2 0 71 1 0 14 1 0 4 1 2 40 3 2 19 2 1 19 chain 16100 chr12 133275309 + 107665170 107665355 L1PA5 6144 + 5947 6132 60891 185 chain 491825 chr12 133275309 + 107722651 107728252 L1PA5 6144 + 0 6132 3377 89 0 525 36 0 2 383 11 34 85 0 3 71 2 1 770 1 4 190 0 2 120 1 0 654 33 0 605 0 1 766 0 4 866 0 1 8 1 0 164 0 4 738 1 0 6 chain 25242 chr12 133275309 + 107821901 107822196 LTR12 884 + 589 884 48882 295 chain 5634 chr12 133275309 + 107826122 107826187 LTR5_Hs 974 + 3 68 82643 65 chain 3885 chr12 133275309 + 107835895 107835940 L1M3 994 + 170 215 92252 45 chain 31448 chr12 133275309 + 107848465 107848958 LTR19A 502 + 0 502 40774 36 0 1 150 0 37 42 4 0 19 20 0 126 1 0 19 45 41 31 chain 22810 chr12 133275309 + 107851439 107851770 L1PA8 5853 + 5530 5853 52645 34 1 0 43 5 3 69 1 0 9 2 0 52 5 4 16 1 0 93 chain 43504 chr12 133275309 + 107860638 107861612 L1P2 5180 + 1261 1884 32455 14 42 47 451 6 14 53 364 0 44 chain 359209 chr12 133275309 + 107861612 107867174 L1PA7 6471 + 2088 6465 5808 801 10 16 567 1 5 14 2 1 31 0 1 91 0 1 50 0 5 160 1 2 428 1 0 8 1 2 411 1205 0 110 9 1 403 2 1 417 0 3 134 3 0 12 0 5 243 0 6 303 0 1 76 0 1 26 12 14 20 3 0 7 chain 75181 chr12 133275309 + 107864193 107865394 LTR12D 1347 + 0 1347 22800 44 10 0 50 37 81 70 8 9 11 1 0 4 0 4 8 4 1 15 104 34 62 11 6 97 0 2 38 1 32 22 1 0 18 0 41 45 0 17 108 2 1 165 0 97 265 chain 208828 chr12 133275309 + 107921469 107924339 L1PA8A 6298 + 3714 6291 9388 145 5 10 31 0 1 498 18 19 64 0 2 238 0 1 96 2 0 670 8 7 83 301 0 260 1 0 4 5 6 158 0 1 283 chain 3357 chr12 133275309 + 107945714 107945750 L1MA4 2864 - 1596 1632 96508 36 chain 51673 chr12 133275309 + 108009808 108010464 PABL_A 660 + 0 660 28971 171 12 13 331 1 3 55 0 1 86 chain 17881 chr12 133275309 + 108074459 108074998 L1PB1 5432 + 4854 5376 58783 57 0 119 73 1 2 10 199 82 23 2 1 10 6 5 39 6 5 16 1 0 6 16 6 19 2 0 5 1 0 14 2 0 24 1 0 6 chain 2706 chr12 133275309 + 108078371 108078404 MIRb 242 + 34 66 102312 5 1 0 27 chain 5482 chr12 133275309 + 108094414 108094506 MER58A 224 + 8 107 83307 12 15 22 65 chain 61486 chr12 133275309 + 108395722 108396417 L1PA5 6144 + 5445 6143 25989 409 0 3 286 chain 50384 chr12 133275309 + 108397513 108398074 L1PA5 6144 + 5567 6127 29416 409 1 0 151 chain 60466 chr12 133275309 + 108420562 108421267 SVA_B 1603 + 864 1602 26246 20 4 0 15 2 1 21 4 0 28 3 44 136 1 2 471 chain 41488 chr12 133275309 + 108439742 108440278 MER41A 554 + 14 554 33680 179 1 0 241 4 9 111 chain 10909 chr12 133275309 + 108440278 108440415 MER4D 903 + 192 329 68683 137 chain 34542 chr12 133275309 + 108442920 108443387 LTR10F 562 + 0 562 38326 122 1 29 21 24 0 10 0 83 200 0 7 58 0 1 31 chain 44255 chr12 133275309 + 108454728 108455287 MER41A 554 + 2 554 31978 253 18 11 288 chain 6636 chr12 133275309 + 108485674 108485768 MLT1B 390 + 280 374 78856 15 2 1 13 0 1 64 chain 10160 chr12 133275309 + 108487295 108487440 L1P4 1494 + 1036 1183 70085 44 4 5 72 0 1 25 chain 9618 chr12 133275309 + 108502856 108502975 L1MB3 1562 + 1240 1358 71225 111 1 0 7 chain 140858 chr12 133275309 + 108655372 108657065 SVA_C 1631 + 20 1623 13036 76 0 6 618 40 0 132 44 0 6 0 1 5 2 0 46 1 0 45 2 1 46 1 0 613 8 0 8 chain 6080 chr12 133275309 + 108710319 108710389 MER41A 554 + 398 468 80802 70 chain 7256 chr12 133275309 + 108744255 108744528 L1MDa 1598 + 1258 1532 76800 69 52 107 11 50 0 23 0 2 5 46 40 17 chain 5105 chr12 133275309 + 108766341 108766418 MER3 215 + 14 98 85136 58 3 0 5 0 10 11 chain 2982 chr12 133275309 + 108844752 108844789 MLT1E 632 + 281 320 100049 6 0 2 31 chain 41604 chr12 133275309 + 108871252 108872248 LTR8 732 + 0 725 33623 162 34 25 59 11 6 57 0 1 123 4 5 30 31 32 28 1 0 39 340 81 77 chain 5464 chr12 133275309 + 108904574 108904693 MER1B 344 + 204 339 83384 9 1 0 14 41 58 54 chain 10845 chr12 133275309 + 108922143 108922543 LTR40a 516 + 95 516 68785 65 212 233 4 1 0 56 22 23 40 chain 6324 chr12 133275309 + 108929643 108929718 MER31B 477 + 271 345 79914 39 1 0 35 chain 41544 chr12 133275309 + 108934498 108935027 MER41A 554 + 0 530 33657 50 0 1 5 1 0 37 1 2 35 0 1 59 5 4 336 chain 23241 chr12 133275309 + 108980476 108980775 AluYb8 318 + 10 307 52016 44 29 27 226 chain 26025 chr12 133275309 + 108990381 108990669 L1PA5 6144 + 5856 6144 47681 288 chain 280446 chr12 133275309 + 108996947 109000000 L1HS 6032 + 0 3053 7409 3053 chain 273821 chr12 133275309 + 109000000 109002973 L1PA2 6032 + 3053 6032 7612 90 0 2 1081 0 4 949 0 2 846 2 0 5 chain 3549 chr12 133275309 + 109017444 109017484 MER3 215 - 3 43 94851 40 chain 6290 chr12 133275309 + 109065890 109065964 MER58B 340 + 220 294 80032 74 chain 7105 chr12 133275309 + 109225839 109225985 MER33 330 + 125 285 77248 20 0 3 8 1 0 33 9 10 29 1 14 6 1 0 7 4 3 27 chain 24073 chr12 133275309 + 109234612 109234910 L1PA8A 6298 + 5992 6290 50696 193 0 1 5 2 1 98 chain 4491 chr12 133275309 + 109236437 109236552 MER58A 224 + 41 155 88384 42 48 47 25 chain 19705 chr12 133275309 + 109244918 109245188 AluSp 311 + 1 297 56776 148 10 24 25 0 1 69 0 14 10 3 0 5 chain 51354 chr12 133275309 + 109325321 109325987 L1PA8 5853 + 4579 5262 29094 92 8 5 16 3 9 157 0 5 141 0 8 65 6 7 178 chain 3029 chr12 133275309 + 109348375 109348407 MER3 215 + 166 198 99498 32 chain 22333 chr12 133275309 + 109639141 109639495 THE1D 372 + 16 372 53360 36 12 0 116 18 25 45 0 7 51 12 13 27 2 1 35 chain 21966 chr12 133275309 + 109781968 109782322 THE1B 368 + 0 368 53886 140 13 21 8 1 0 29 6 2 10 0 4 10 17 25 57 7 6 56 chain 29682 chr12 133275309 + 109801263 109801640 THE1C 375 + 0 375 42388 15 2 0 360 chain 3366 chr12 133275309 + 109838184 109838220 L1MB7 1623 + 1384 1420 96413 36 chain 22166 chr12 133275309 + 110045323 110045603 AluSc5 308 + 13 300 53615 21 0 5 209 1 3 49 chain 3271 chr12 133275309 + 110046791 110046974 MER20 218 + 37 218 97288 29 21 21 19 98 96 16 chain 34165 chr12 133275309 + 110049154 110050113 LTR2B 499 + 8 499 38586 6 1 0 55 3 0 42 0 19 34 510 30 115 0 1 7 1 0 40 3 0 142 chain 46025 chr12 133275309 + 110050343 110050896 MER41A 554 + 0 553 31051 401 1 0 84 0 1 67 chain 7360 chr12 133275309 + 110168798 110168894 MER68 562 + 0 95 76505 21 0 1 66 2 0 7 chain 135995 chr12 133275309 + 110172360 110173972 SVA_D 2077 + 13 2070 13433 12 5 0 540 0 396 30 0 2 9 0 52 197 33 62 32 1 2 37 1 0 4 24 0 13 5 1 359 1 0 309 chain 2363 chr12 133275309 + 110173153 110173186 SVA_D 2077 + 1024 1059 34806 12 0 2 21 chain 22730 chr12 133275309 + 110261167 110261430 AluSp 311 + 39 301 52785 192 1 0 70 chain 4158 chr12 133275309 + 110319849 110320047 Tigger4a 237 + 10 237 90411 16 12 27 38 114 128 18 chain 20011 chr12 133275309 + 110398682 110398965 AluSp 311 + 10 300 56373 13 3 0 43 10 22 147 5 3 62 chain 25172 chr12 133275309 + 110408745 110409124 LTR7B 505 + 0 496 49002 106 1 11 54 18 86 32 2 1 21 1 42 88 11 10 45 chain 3740 chr12 133275309 + 110416636 110416678 MER34D 576 + 0 42 93336 42 chain 36715 chr12 133275309 + 110421434 110421907 LTR15 485 + 0 478 36948 107 0 1 42 0 2 131 0 4 142 8 0 8 0 5 14 0 1 21 chain 2891 chr12 133275309 + 110554510 110554554 MER33 330 + 270 322 100919 24 1 9 19 chain 2948 chr12 133275309 + 110557135 110557222 MER33 330 + 14 98 100374 32 41 38 14 chain 75432 chr12 133275309 + 110570037 110571005 LTR5_Hs 974 + 0 974 22736 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 40560 chr12 133275309 + 110571005 110571520 HERVK-int 6823 + 0 494 34258 5 1 0 17 1 0 20 1 0 20 1 0 38 1 0 21 15 12 17 12 0 306 1 0 38 chain 93005 chr12 133275309 + 110629095 110630237 L1PA7 6471 + 5310 6469 19178 111 1 0 200 0 3 233 1 0 130 0 3 169 0 17 28 1 2 126 1 0 101 4 3 18 3 0 15 chain 4294 chr12 133275309 + 110632605 110632685 MADE1 96 + 0 96 89546 30 3 19 47 chain 23160 chr12 133275309 + 110672621 110672964 THE1A 353 + 0 353 52129 44 0 2 14 24 25 25 2 1 81 1 5 145 0 4 7 chain 119973 chr12 133275309 + 110672964 110674488 THE1A-int 1579 + 0 1574 15540 150 0 1 136 0 1 105 4 13 170 0 1 86 5 35 26 0 1 158 0 3 493 11 10 16 0 1 6 1 0 80 1 6 76 chain 3988 chr12 133275309 + 110693186 110693241 Charlie4a 502 + 90 212 91531 45 0 67 10 chain 8376 chr12 133275309 + 110726658 110726762 Tigger4a 237 + 31 135 73960 104 chain 32905 chr12 133275309 + 110770945 110771399 MER4A1 472 + 0 472 39584 15 0 2 4 0 1 11 1 0 8 3 5 135 5 4 35 13 28 224 chain 8621 chr12 133275309 + 110789221 110789342 MSTA 426 + 315 424 73405 51 13 1 57 chain 22358 chr12 133275309 + 110839088 110839390 AluSq2 311 + 10 304 53335 30 4 1 78 1 0 14 0 1 164 5 0 6 chain 4325 chr12 133275309 + 110895654 110895702 MIRb 242 + 94 142 89319 48 chain 3869 chr12 133275309 + 110934234 110934280 MER117 194 + 100 146 92359 46 chain 4818 chr12 133275309 + 111013519 111013697 LTR16C 481 + 191 382 86610 42 104 117 32 chain 24767 chr12 133275309 + 111258237 111258531 AluSx 319 + 7 301 49635 294 chain 48007 chr12 133275309 + 111340545 111341131 LTR10C 591 + 0 591 30293 15 0 5 37 0 2 194 0 1 4 2 1 16 5 3 313 chain 30194 chr12 133275309 + 111365504 111365870 L1PA8A 6298 + 5921 6289 41857 213 0 1 87 0 1 66 chain 13345 chr12 133275309 + 111479627 111479829 MER30 238 + 0 238 64554 14 10 28 57 7 0 17 0 25 97 chain 3240 chr12 133275309 + 111504592 111504629 L1MB8 1703 + 508 545 97569 37 chain 138455 chr12 133275309 + 111506637 111508170 SVA_D 2077 + 8 2074 13224 532 0 40 331 0 489 44 0 1 4 0 1 348 0 1 177 0 1 97 chain 19516 chr12 133275309 + 111555324 111555652 THE1C 375 + 0 335 57001 13 2 0 31 44 51 85 5 6 101 6 7 41 chain 19230 chr12 133275309 + 111566955 111567210 Tigger1 2417 + 1651 1907 57314 59 5 6 191 chain 3339 chr12 133275309 + 111572077 111572116 MER58C 217 + 145 184 96701 39 chain 22342 chr12 133275309 + 111647632 111647919 AluSp 311 + 9 311 53350 31 4 14 191 0 5 61 chain 8881 chr12 133275309 + 111711088 111711196 LTR10C 591 + 0 108 72814 108 chain 22396 chr12 133275309 + 111827972 111828434 MER51B 395 + 11 395 53280 28 8 27 76 112 0 103 1 0 7 7 8 33 4 16 5 1 0 17 0 4 60 chain 3576 chr12 133275309 + 111828888 111828932 MER5A1 166 + 67 111 94615 44 chain 108151 chr12 133275309 + 111835471 111836811 LTR12C 1709 + 0 1709 17301 303 0 1 110 0 1 4 1 0 45 0 1 184 0 280 183 1 0 4 8 6 94 24 14 225 0 101 71 1 0 82 chain 5618 chr12 133275309 + 111837554 111837701 MLT1C 463 + 59 221 82715 46 0 5 9 17 11 10 1 0 5 22 33 11 1 5 11 0 2 14 chain 34522 chr12 133275309 + 111850327 111850857 Tigger2 2703 + 843 1390 38340 87 26 41 61 6 8 19 1 0 209 37 39 64 1 0 19 chain 169240 chr12 133275309 + 111907816 111910937 L1MA2 4263 + 326 4043 11143 15 1 0 4 0 1 137 27 26 37 0 4 26 317 1226 73 17 27 24 7 1 15 1 0 22 2 0 5 63 3 29 1 0 4 0 2 231 4 1 314 0 4 41 0 1 19 0 1 25 1 0 46 13 8 77 1 0 133 5 6 200 2 4 34 0 8 116 1 2 46 0 1 7 2 1 214 299 3 30 6 8 74 11 12 128 3 0 35 0 25 47 0 9 6 1 2 27 22 17 73 chain 15096 chr12 133275309 + 111945823 111946019 MER47A 366 + 65 266 62162 26 6 3 95 0 8 69 chain 7487 chr12 133275309 + 111946795 111946930 MER85 139 + 0 139 76157 42 9 13 41 8 9 11 2 1 22 chain 136534 chr12 133275309 + 111956494 111958290 SVA_B 1603 + 5 1603 13387 15 27 0 19 1 25 282 0 1 84 116 0 464 1 0 4 0 1 76 1 0 14 1 0 59 78 0 554 chain 436971 chr12 133275309 + 111958326 111963812 L1PA7 6471 + 1284 6456 4622 46 1 0 11 0 1 4 1 0 1017 0 2 275 4 0 44 5 0 169 0 3 30 0 4 269 327 0 200 5 6 132 1 0 81 0 4 403 1 0 81 0 1 149 0 5 441 6 10 222 0 1 91 0 1 634 0 3 58 0 1 159 12 0 353 0 1 54 0 6 200 chain 8870 chr12 133275309 + 111985920 111986073 L1MB3 1562 + 3 150 72831 13 8 7 35 9 5 83 1 0 4 chain 22091 chr12 133275309 + 112062448 112062738 AluSq 315 + 6 297 53712 130 11 9 7 0 3 142 chain 29390 chr12 133275309 + 112145859 112146179 L1PA3long 6157 + 5837 6157 42751 320 chain 8715 chr12 133275309 + 112149368 112149470 HY1 111 + 9 111 73178 102 chain 21266 chr12 133275309 + 112267076 112267308 7SK 245 + 0 232 54806 232 chain 57253 chr12 133275309 + 112334251 112335415 L1PB1 5432 + 4539 5324 27177 82 2 0 168 323 0 15 1 0 299 39 11 24 1 0 9 1 0 9 2 0 3 2 0 9 2 0 52 2 1 15 1 0 41 10 9 10 3 0 6 20 9 13 chain 68369 chr12 133275309 + 112390065 112390834 L1PA5 6144 + 5382 6144 24366 608 7 0 154 chain 187034 chr12 133275309 + 112394996 112398439 L1PA8 5853 + 1123 5656 10251 476 5 6 283 616 0 138 1 0 459 0 4 218 532 2240 59 8 6 131 5 4 417 1 0 46 2 0 46 chain 20149 chr12 133275309 + 112433168 112433425 Tigger3c 601 + 309 570 56191 74 0 4 183 chain 26103 chr12 133275309 + 112522152 112523717 HSMAR2 1300 + 51 1299 47568 294 1184 865 55 11 13 21 chain 10040 chr12 133275309 + 112542625 112542741 MER41B 635 + 511 627 70333 116 chain 21872 chr12 133275309 + 112566900 112567258 THE1D 372 + 0 372 54011 111 0 1 48 9 10 10 1 0 4 7 12 14 13 14 70 13 20 58 chain 560571 chr12 133275309 + 112621197 112627228 L1PA2 6032 + 3 6032 157 3138 0 4 2879 6 0 8 chain 24724 chr12 133275309 + 112643773 112644106 L1PB4 2604 + 2195 2547 49685 122 0 18 70 1 2 140 chain 27154 chr12 133275309 + 112668441 112668785 L1PA8 5853 + 5474 5815 46035 41 0 2 47 1 0 46 2 0 128 4 3 19 1 0 55 chain 3093 chr12 133275309 + 112768463 112768502 L2a 937 + 646 684 98844 13 1 0 25 chain 33155 chr12 133275309 + 112904144 112904587 LTR2 463 + 0 463 39400 162 8 29 4 1 0 165 16 17 64 1 0 22 chain 29934 chr12 133275309 + 112929946 112930347 MSTA 426 + 18 417 42112 185 1 0 4 4 0 6 1 5 148 1 0 51 chain 3472 chr12 133275309 + 113024552 113024596 MER3 215 + 125 169 95438 44 chain 16882 chr12 133275309 + 113025075 113025448 MLT1B 390 + 77 390 59929 33 102 43 21 16 12 10 18 21 173 chain 15609 chr12 133275309 + 113033201 113033400 THE1B 368 + 174 368 61521 26 2 0 89 4 1 78 chain 11183 chr12 133275309 + 113088476 113088618 L1PA6 6164 + 6022 6161 68275 132 3 0 7 chain 9028 chr12 133275309 + 113156398 113156536 LTR2C 499 + 387 499 72500 54 0 1 11 27 0 46 chain 3405 chr12 133275309 + 113222139 113222181 MIR3 191 + 71 113 96019 42 chain 45430 chr12 133275309 + 113335969 113336525 MER41A 554 + 0 554 31349 34 8 9 99 3 0 412 chain 4899 chr12 133275309 + 113395493 113395549 MLT1J 494 + 101 157 86157 56 chain 27289 chr12 133275309 + 113490969 113491312 THE1A 353 + 0 341 45841 107 4 3 88 1 0 143 chain 131565 chr12 133275309 + 113491324 113492910 THE1A-int 1579 + 0 1579 13864 19 17 9 1545 0 1 5 chain 26736 chr12 133275309 + 113492910 113493265 THE1A 353 + 0 353 46630 66 1 0 35 11 10 87 1 0 97 0 1 57 chain 41787 chr12 133275309 + 113513751 113514705 MER41B 635 + 0 615 33499 93 1 0 33 0 1 97 0 1 201 31 0 36 355 41 46 12 17 49 chain 102980 chr12 133275309 + 113529746 113531083 THE1B-int 1605 + 294 1605 17953 7 0 1 130 0 25 8 0 2 51 57 3 88 1 0 990 0 1 5 chain 25582 chr12 133275309 + 113531100 113531436 THE1B 368 + 18 368 48343 26 6 21 111 1 0 192 chain 2971 chr12 133275309 + 113536520 113536556 MIRb 242 + 98 134 100182 36 chain 45381 chr12 133275309 + 113615222 113616000 L1PB1 5432 + 4695 5392 31371 33 1 0 35 0 8 243 7 9 78 74 14 19 1 0 6 7 6 10 2 0 3 2 0 7 2 0 54 2 1 15 1 0 45 1 0 8 21 8 30 2 0 4 1 0 15 2 0 24 1 0 22 chain 21040 chr12 133275309 + 113626664 113627012 THE1B 368 + 0 368 55069 78 0 1 35 0 2 61 38 32 4 0 1 18 15 21 66 1 17 32 chain 132879 chr12 133275309 + 113871888 113873699 SVA_F 1814 + 335 1814 13749 493 154 19 8 1 0 31 1 0 12 79 0 38 0 1 10 0 15 39 2 0 4 1 0 172 129 0 637 chain 13664 chr12 133275309 + 113872381 113872535 SVA_F 1814 + 982 1136 43444 154 chain 6921 chr12 133275309 + 113872589 113872667 SVA_F 1814 + 1187 1265 43444 78 chain 8349 chr12 133275309 + 113872934 113873062 SVA_F 1814 + 937 1001 52323 10 79 15 39 chain 873 chr12 133275309 + 113872945 113872972 SVA_F 1814 + 1089 1116 55999 27 chain 3371 chr12 133275309 + 113872972 113873023 SVA_F 1814 + 1038 1089 67283 51 chain 9050 chr12 133275309 + 114021862 114021960 LTR7Y 441 + 334 432 72449 98 chain 24781 chr12 133275309 + 114021969 114022277 HERVH-int 3825 + 0 2085 49619 145 0 1777 163 chain 26782 chr12 133275309 + 114022301 114022670 LTR7 482 + 0 440 46566 54 23 61 109 0 1 38 1 32 17 0 1 127 chain 8909 chr12 133275309 + 114034470 114034581 Tigger1 2417 + 1853 1964 72767 111 chain 32546 chr12 133275309 + 114055743 114056157 LTR7B 505 + 0 489 39914 105 0 11 59 0 38 12 0 25 6 1 0 22 0 2 82 1 0 86 0 1 40 chain 16341 chr12 133275309 + 114056219 114056529 HERVH-int 3825 + 45 396 60582 12 17 21 76 0 2 18 62 98 61 1 0 63 chain 32100 chr12 133275309 + 114062959 114063373 LTR7B 505 + 0 489 40274 108 0 10 55 16 79 26 0 2 24 0 1 57 1 0 127 chain 162230 chr12 133275309 + 114067128 114070411 HERVIP10F-int 4088 + 218 3289 11595 13 14 8 12 4 0 16 6 7 14 1 0 18 1 0 8 194 131 13 1 0 16 56 45 18 1 0 31 1 0 33 1 0 8 1 0 4 7 5 10 1 0 9 5 4 14 7 6 9 2 0 10 1 0 28 3 1 7 1 0 45 1 0 4 4 2 33 1 0 7 1 0 57 4 2 5 1 0 14 0 3 9 1 0 11 1 0 7 1 2 11 1 0 8 1 0 5 14 6 4 1 0 20 1 0 5 12 8 30 1 0 36 3 4 12 1 0 8 1 0 13 1 0 5 15 11 24 9 6 20 1 0 15 1 0 14 0 1 26 5 4 133 4 0 12 1 0 6 23 16 12 1 0 12 7 5 23 1 0 30 1 0 63 7 5 19 1 0 10 0 4 38 68 63 158 0 1 242 1 0 20 1 0 65 9 8 56 0 3 13 4 3 37 0 1 6 2 0 30 8 7 4 1 0 140 1 0 80 13 10 121 2 0 36 0 4 8 13 12 256 24 21 60 46 27 10 4 0 23 83 69 7 1 0 18 50 42 13 2 1 13 chain 92821 chr12 133275309 + 114085137 114086162 L1PA3long 6157 + 3796 4821 19210 254 1 0 546 0 1 224 chain 43418 chr12 133275309 + 114092149 114092672 MER9a1 513 + 0 513 32493 19 3 1 38 2 0 388 6 0 67 chain 69137 chr12 133275309 + 114101146 114102022 L1PA7 6471 + 5572 6470 24189 26 0 4 12 0 5 67 4 7 5 0 2 19 0 3 83 0 3 182 0 3 143 4 5 170 2 0 159 chain 19696 chr12 133275309 + 114196913 114197293 MSTA 426 + 0 426 56790 36 12 13 56 23 51 50 52 50 40 1 21 75 1 0 34 chain 3193 chr12 133275309 + 114215173 114215210 MER5A1 166 + 58 95 97960 37 chain 13276 chr12 133275309 + 114231246 114231460 MER30 238 + 0 237 64671 15 4 11 76 8 27 42 2 0 6 0 2 20 5 2 36 chain 28439 chr12 133275309 + 114250697 114251069 THE1C 375 + 0 375 44210 127 8 12 211 1 0 25 chain 38946 chr12 133275309 + 114278948 114279406 LTR2 463 + 0 463 35397 75 0 1 51 0 3 301 0 1 31 chain 4919 chr12 133275309 + 114345533 114345870 L1MD2 1676 + 1387 1649 86057 45 77 27 15 33 11 14 0 3 12 125 119 16 chain 23722 chr12 133275309 + 114349439 114349797 THE1B 368 + 0 368 51244 169 1 0 26 12 19 10 7 6 12 3 8 56 7 6 37 0 1 18 chain 20013 chr12 133275309 + 114428231 114428546 Tigger4b 360 + 41 358 56371 88 0 2 36 1 0 53 0 2 73 6 12 10 30 23 18 chain 10587 chr12 133275309 + 114510276 114510401 L1PA7 6471 + 6343 6465 69250 116 3 0 6 chain 26902 chr12 133275309 + 114511114 114511941 L1MA3 4352 + 3778 4346 46403 25 42 43 165 128 102 89 221 0 33 4 0 18 7 5 24 3 2 4 1 0 29 1 0 11 6 2 16 chain 17358 chr12 133275309 + 114588923 114589120 L1PA5 6144 + 5947 6144 59405 197 chain 40208 chr12 133275309 + 114592103 114592598 MER9a3 513 + 15 513 34515 95 0 1 65 13 14 244 0 1 78 chain 46143 chr12 133275309 + 114594473 114595066 L1PA8 5853 + 5267 5853 30988 297 1 0 44 3 1 70 1 0 9 15 14 34 9 8 16 1 0 93 chain 24368 chr12 133275309 + 114599653 114599957 THE1D-int 1627 + 12 316 50219 6 2 0 20 1 0 66 0 3 209 chain 29836 chr12 133275309 + 114609120 114609562 MLT2A2 560 + 3 560 42200 177 1 0 16 26 27 4 1 0 68 9 118 41 0 7 99 chain 23668 chr12 133275309 + 114623110 114623503 THE1D 372 + 0 372 51330 57 41 17 10 5 1 43 0 4 30 0 1 4 1 3 15 4 0 13 6 10 164 chain 60137 chr12 133275309 + 114810996 114811688 L1PA5 6144 + 5456 6144 26335 51 1 0 624 3 0 13 chain 53681 chr12 133275309 + 114867060 114867668 L1PA5 6144 + 5526 6128 28332 284 0 1 148 1 0 133 6 0 36 chain 37670 chr12 133275309 + 114912072 114913098 L1MA6 2487 + 1697 2402 36287 133 15 0 15 294 38 47 1 0 67 7 6 25 5 10 28 9 6 112 0 4 37 23 7 34 111 77 36 3 0 19 1 0 4 chain 17354 chr12 133275309 + 114912300 114912501 L1PA5 6144 + 5931 6132 59411 201 chain 25427 chr12 133275309 + 114930377 114930690 AluYk4 311 + 0 298 48590 132 2 0 157 13 0 9 chain 182896 chr12 133275309 + 115099115 115101295 L1PA7 6471 + 4297 6470 10442 371 0 4 62 13 1 63 0 1 795 0 5 22 1 0 230 3 2 612 3 0 5 chain 13506 chr12 133275309 + 115114978 115115144 Tigger3a 397 + 139 305 64310 166 chain 6329 chr12 133275309 + 115141571 115141647 MER121 330 + 134 210 79898 76 chain 27369 chr12 133275309 + 115144007 115144325 L1PA8A 6298 + 5964 6282 45739 318 chain 19893 chr12 133275309 + 115210183 115210552 THE1C 375 + 0 375 56543 58 29 30 20 16 36 10 23 7 18 7 8 45 0 1 117 1 0 25 chain 25541 chr12 133275309 + 115246687 115246979 AluY 311 + 18 311 48422 115 0 1 177 chain 16505 chr12 133275309 + 115275480 115275837 L1PB1 5432 + 5114 5430 60365 24 8 6 12 2 0 3 2 0 9 2 0 53 8 0 15 1 0 43 2 1 12 28 16 18 3 1 5 1 0 14 2 0 24 1 0 23 1 0 11 1 0 14 1 0 4 1 0 4 1 0 4 chain 547743 chr12 133275309 + 115285124 115291136 L1PA3long 6157 + 0 6144 879 152 8 9 620 0 128 258 9 12 4965 chain 53007 chr12 133275309 + 115318760 115319372 L1PA7 6471 + 5839 6453 28574 125 0 2 487 chain 130217 chr12 133275309 + 115366193 115367772 THE1A-int 1579 + 0 1579 14011 397 0 1 463 0 1 128 2 0 589 chain 3944 chr12 133275309 + 115386828 115386871 MER3 215 + 167 210 91798 43 chain 43395 chr12 133275309 + 115410019 115410567 MLT2A2 560 + 0 560 32514 180 1 0 178 0 1 47 0 11 8 0 1 134 chain 3196 chr12 133275309 + 115432722 115432856 MIR 256 + 68 201 97927 26 80 79 28 chain 32435 chr12 133275309 + 115441263 115441706 MLT2A1 477 + 0 458 40005 46 1 0 20 1 0 103 4 1 223 12 0 12 4 36 17 chain 2647 chr12 133275309 + 115441869 115441897 MLT2A2 560 + 516 544 102738 28 chain 12922 chr12 133275309 + 115463011 115463202 MER20 218 + 23 213 65217 57 1 6 7 7 0 63 1 2 55 chain 15903 chr12 133275309 + 115477549 115477838 L1PA15 4387 + 4070 4341 61148 24 11 10 26 1 0 55 1 0 23 4 0 9 9 8 42 6 3 44 3 1 14 5 0 12 chain 22934 chr12 133275309 + 115477947 115478223 AluY 311 + 18 295 52465 125 0 1 151 chain 43666 chr12 133275309 + 115506173 115506724 MER41A 554 + 0 547 32339 68 6 5 20 0 1 369 4 0 84 chain 4290 chr12 133275309 + 115549681 115549748 MLT1F2 592 + 96 164 89570 49 5 6 13 chain 3610 chr12 133275309 + 115663371 115663430 MER53 195 + 8 68 94336 25 4 5 30 chain 17599 chr12 133275309 + 115664095 115664318 L1MB1 2102 + 1195 1419 59122 82 0 1 141 chain 87842 chr12 133275309 + 115668393 115669368 L1P1 4361 + 2306 3281 20077 528 0 2 320 2 0 125 chain 70400 chr12 133275309 + 115678783 115679657 THE1A-int 1579 + 697 1574 23892 507 1 0 46 1 0 243 0 5 76 chain 26868 chr12 133275309 + 115679662 115680017 THE1A 353 + 0 353 46446 102 9 8 92 1 0 151 chain 36483 chr12 133275309 + 115701844 115702276 L1PA5 6144 + 5704 6136 37086 432 chain 4121 chr12 133275309 + 115733742 115733867 MER3 215 - 8 161 90642 26 65 93 34 chain 33452 chr12 133275309 + 115735478 115735867 L1PA7 6471 + 6076 6467 39127 85 0 1 198 0 1 106 chain 22827 chr12 133275309 + 115808139 115808390 L1PA5 6144 + 5880 6131 52620 251 chain 26527 chr12 133275309 + 115876170 115876471 L1PA7 6471 + 6169 6469 46936 145 1 0 155 chain 17528 chr12 133275309 + 115906522 115907496 L1PB1 5432 + 5106 5427 59204 8 1 0 24 1 0 8 1 0 12 5 1 9 2 0 9 0 2 40 1 0 17 1 0 44 624 0 16 14 1 18 0 2 10 2 0 4 1 0 13 2 0 26 1 0 10 0 1 6 5 4 13 1 0 18 2 0 5 chain 100047 chr12 133275309 + 116326838 116328742 L1PA15 4387 + 2817 4366 18295 243 0 6 18 314 0 52 39 41 17 12 3 11 4 5 149 11 10 105 2 0 81 2 1 161 1 0 93 0 2 13 12 7 5 1 0 50 2 0 10 1 0 6 0 10 17 1 0 37 0 1 7 0 1 107 20 19 26 1 0 52 1 0 24 36 10 50 6 3 44 3 1 14 5 0 27 1 0 10 chain 38359 chr12 133275309 + 116417750 116418375 MER41A 554 + 0 554 35808 93 0 1 259 0 1 15 132 54 43 0 5 83 chain 40305 chr12 133275309 + 116428355 116428895 MER41A 554 + 0 554 34443 109 12 13 97 0 2 172 5 7 31 2 0 7 1 10 53 1 3 50 chain 3713 chr12 133275309 + 116451591 116451657 MER58A 224 + 50 115 93513 28 15 14 23 chain 5190 chr12 133275309 + 116570779 116570840 MER47A 366 + 246 307 84728 61 chain 13954 chr12 133275309 + 116584383 116584743 MSTA 426 + 27 414 63662 30 29 37 19 1 19 16 51 53 12 3 0 13 0 21 8 46 25 48 0 2 84 chain 22791 chr12 133275309 + 116608214 116608504 AluSc 308 + 9 301 52683 20 0 1 106 5 6 159 chain 5729 chr12 133275309 + 116649216 116649287 L1MB5 1630 + 1179 1250 82226 71 chain 24668 chr12 133275309 + 116650847 116651200 THE1B 368 + 0 368 49775 169 1 0 22 17 23 10 3 13 7 1 0 66 1 2 56 chain 95385 chr12 133275309 + 116660543 116661920 LTR12C 1709 + 0 1709 18857 24 5 6 256 9 10 42 12 55 216 4 5 36 0 278 184 1 0 5 3 1 32 0 3 62 44 13 117 0 29 34 0 4 27 12 8 60 0 4 59 4 11 37 15 14 77 chain 6479 chr12 133275309 + 116667992 116668067 MER57B1 401 + 9 84 79413 75 chain 51852 chr12 133275309 + 116763179 116764345 L1PB1 5432 + 4621 5427 28922 201 12 20 73 337 0 186 7 8 5 1 0 24 1 0 9 1 0 10 6 2 8 2 0 40 0 1 4 11 7 18 1 0 44 1 0 15 3 0 2 10 0 29 2 0 4 1 0 14 3 1 24 1 0 22 1 0 7 1 5 18 2 0 5 chain 19535 chr12 133275309 + 116769352 116769725 Tigger3b 1229 + 338 765 56978 26 7 18 118 46 73 50 1 5 22 5 11 33 18 24 47 chain 5045 chr12 133275309 + 116778873 116778943 MSTB2 466 + 398 466 85444 58 2 0 10 chain 7856 chr12 133275309 + 116782111 116782208 U6 107 + 7 107 75238 40 0 3 57 chain 3787 chr12 133275309 + 116827579 116827631 MER58A 224 + 42 91 92945 5 3 0 44 chain 5346 chr12 133275309 + 116890318 116890383 MER58A 224 + 151 216 83973 65 chain 7662 chr12 133275309 + 116901778 116901957 L1MB8 1703 + 1400 1579 75722 23 68 68 88 chain 5341 chr12 133275309 + 116902355 116902438 MER53 195 + 2 87 83997 61 10 12 12 chain 4476 chr12 133275309 + 116985013 116985091 Tigger4b 360 + 171 250 88462 49 13 14 16 chain 12197 chr12 133275309 + 116994006 116994168 L1PB3 3668 + 2337 2499 66478 29 0 1 119 2 1 12 chain 6984 chr12 133275309 + 117274831 117274915 L1MA5A 2387 + 1946 2031 77657 80 0 1 4 chain 5892 chr12 133275309 + 117336548 117336627 L1PB1 5432 + 5346 5422 81517 27 1 0 18 1 0 13 1 0 18 chain 29308 chr12 133275309 + 117418599 117418975 THE1C 375 + 0 375 42877 125 3 0 56 0 1 171 0 1 21 chain 69495 chr12 133275309 + 117428445 117429199 L1PA3long 6157 + 5403 6157 24122 754 chain 25597 chr12 133275309 + 117446860 117447208 THE1A 353 + 1 351 48322 44 1 0 36 3 5 24 1 0 72 0 1 9 0 2 4 1 0 153 chain 27987 chr12 133275309 + 117493694 117494045 THE1A 353 + 2 352 44890 106 3 2 242 chain 11393 chr12 133275309 + 117560648 117561020 MSTB 430 + 17 414 67925 30 63 65 14 82 87 56 43 61 84 chain 3021 chr12 133275309 + 117584972 117585045 MER20 218 + 5 77 99638 12 28 27 33 chain 19069 chr12 133275309 + 117611775 117612110 L1MB3 1562 + 1249 1553 57469 103 1 0 69 1 0 4 34 8 5 2 0 86 17 16 13 chain 30133 chr12 133275309 + 117650022 117650446 MLT2A1 477 + 0 477 41904 87 1 14 16 1 0 4 0 1 18 0 1 27 1 5 98 11 3 109 0 44 31 1 0 19 chain 463983 chr12 133275309 + 117650446 117656327 HERVL-int 5654 + 0 5554 4021 341 13 1 77 0 2 71 4 0 632 1 0 439 312 0 241 0 1 163 3 5 18 7 6 469 6 0 214 2 0 48 0 1 107 0 1 113 0 1 408 17 6 256 0 2 189 0 1 201 4 1 7 0 3 422 3 0 72 0 1 238 1 7 130 0 3 385 0 3 148 0 1 119 chain 12687 chr12 133275309 + 117652035 117652302 L1PB1 5432 + 5181 5424 65640 39 2 1 10 7 6 44 1 0 15 23 12 7 1 0 12 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 45513 chr12 133275309 + 117722311 117722851 MER41A 554 + 13 554 31300 129 0 1 411 chain 133207 chr12 133275309 + 117730485 117732051 SVA_B 1603 + 4 1600 13727 17 0 1 19 7 0 798 57 17 26 0 80 14 1 0 613 3 0 11 chain 19756 chr12 133275309 + 117737146 117737390 MER75B 242 + 1 242 56725 224 3 0 17 chain 167164 chr12 133275309 + 117745533 117747589 L1PA8 5853 + 3796 5843 11259 712 5 0 8 0 5 260 11 11 214 0 2 78 4 1 477 1 0 42 5 2 74 1 0 5 2 1 52 2 1 18 3 2 82 chain 25538 chr12 133275309 + 117750995 117751362 THE1C 375 + 7 375 48429 53 34 35 90 1 0 47 0 2 115 1 0 26 chain 35503 chr12 133275309 + 117771110 117771560 MER4A1 472 + 0 472 37723 33 1 0 197 0 22 188 0 1 31 chain 15994 chr12 133275309 + 117775742 117776079 L1PB1 5432 + 5123 5427 61031 15 1 0 9 5 0 11 4 0 9 2 0 53 2 1 15 1 0 44 1 0 12 30 17 18 2 0 5 1 0 14 2 0 7 6 7 10 1 0 22 0 3 8 2 1 18 2 0 5 chain 6064 chr12 133275309 + 117780066 117780142 MER33 330 + 142 218 80857 76 chain 19701 chr12 133275309 + 117786811 117787043 AluSp 311 + 64 296 56782 232 chain 45091 chr12 133275309 + 117821832 117822383 MER41A 554 + 0 554 31530 87 3 6 461 chain 18684 chr12 133275309 + 117929221 117929569 THE1B 368 + 0 368 57915 44 5 20 14 7 6 24 8 9 60 61 66 125 chain 3894 chr12 133275309 + 117958948 117958990 L1MA4 2864 + 2766 2808 92179 42 chain 6524 chr12 133275309 + 117986236 117986332 MLT1A0 366 + 85 189 79257 11 0 1 20 10 17 55 chain 19683 chr12 133275309 + 118084751 118085018 AluY 311 + 20 282 56804 15 36 30 67 0 1 149 chain 73915 chr12 133275309 + 118105983 118106943 LTR5_Hs 974 + 0 974 23116 115 5 13 41 1 0 116 0 1 114 0 1 66 0 1 188 1 0 163 8 15 19 20 18 103 chain 23380 chr12 133275309 + 118115529 118115813 AluSp 311 + 10 300 51798 36 9 15 239 chain 5276 chr12 133275309 + 118118625 118118690 LTR8 732 + 667 732 84302 65 chain 129597 chr12 133275309 + 118128434 118129940 L1PA6 6164 + 4596 6141 14087 567 0 5 139 7 8 238 0 16 283 0 9 34 4 5 104 0 5 5 1 3 124 chain 14144 chr12 133275309 + 118149044 118149242 MER107 203 + 0 203 63389 25 1 0 121 1 6 14 4 5 32 chain 58832 chr12 133275309 + 118286292 118287201 L1PB1 5432 + 4535 5417 26728 91 3 0 54 3 5 73 11 10 36 0 2 6 1 4 185 0 1 101 1 2 9 3 0 10 0 1 13 1 0 8 1 0 10 6 2 11 3 1 42 10 9 15 1 0 44 1 0 16 1 0 6 16 6 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 13 chain 31622 chr12 133275309 + 118308024 118308407 MER41A 554 + 84 466 40646 307 6 5 70 chain 2975 chr12 133275309 + 118333771 118333803 L1MB1 2102 + 1693 1725 100098 32 chain 23302 chr12 133275309 + 118354559 118354914 THE1B 368 + 6 368 51924 101 2 3 27 1 7 25 4 3 26 2 1 108 23 25 36 chain 9252 chr12 133275309 + 118464150 118464265 MLT2B1 522 + 0 115 72020 115 chain 23518 chr12 133275309 + 118474533 118474818 AluSp 311 + 8 294 51557 55 0 1 230 chain 21189 chr12 133275309 + 118479903 118480183 LTR8 732 + 31 312 54901 9 6 0 117 0 6 142 0 1 6 chain 4247 chr12 133275309 + 118490173 118490224 LTR8 732 + 681 732 89836 51 chain 72914 chr12 133275309 + 118531091 118531902 L1PA4 6152 + 5340 6152 23332 668 0 1 143 chain 47512 chr12 133275309 + 118547540 118548124 L1PA7 6471 + 5883 6468 30475 84 2 0 378 0 1 110 0 2 10 chain 8717 chr12 133275309 + 118554118 118554275 MER70A 477 + 316 477 73175 91 6 9 20 20 21 20 chain 38205 chr12 133275309 + 118570895 118571400 MER9a3 513 + 0 513 35904 18 0 2 7 0 3 33 3 0 73 0 1 119 5 4 53 0 4 95 1 2 20 0 1 78 chain 26639 chr12 133275309 + 118614847 118615152 AluYk4 311 + 0 305 46774 305 chain 43305 chr12 133275309 + 118617242 118617786 MLT2A2 560 + 0 560 32566 25 0 1 154 1 0 179 0 1 46 11 22 122 0 4 6 chain 29287 chr12 133275309 + 118719868 118720278 MSTA 426 + 0 411 42912 132 1 0 4 17 20 50 7 6 199 chain 28695 chr12 133275309 + 118779826 118780158 L1PA5 6144 + 5802 6134 43808 332 chain 29121 chr12 133275309 + 118824552 118824866 AluYb8 318 + 0 309 43161 126 5 0 183 chain 146306 chr12 133275309 + 118894671 118896862 L1PA15 4387 + 2193 4366 12589 20 3 1 358 0 1 216 4 6 129 27 18 64 0 1 18 0 4 137 7 6 83 1 0 4 0 1 7 5 13 85 3 17 48 0 1 342 0 1 39 3 1 15 4 0 62 3 1 41 1 0 75 9 0 96 61 59 21 2 1 12 9 5 14 2 1 40 16 13 41 7 4 14 5 0 27 1 0 10 chain 8423 chr12 133275309 + 118920600 118920715 L1PB2 3958 + 3726 3838 73853 26 3 1 22 1 0 63 chain 44888 chr12 133275309 + 119126723 119127218 L1PA3long 6157 + 5661 6156 31648 495 chain 24162 chr12 133275309 + 119167438 119167725 AluSp 311 + 4 299 50558 136 3 11 148 chain 14091 chr12 133275309 + 119229580 119229811 MER30 238 + 0 229 63468 104 21 0 16 0 19 20 1 7 6 3 0 21 3 0 36 chain 3985 chr12 133275309 + 119314458 119314502 MLT1K 546 + 142 186 91553 44 chain 29582 chr12 133275309 + 119335928 119336256 L1PA2 6032 + 5703 6028 42502 318 3 0 7 chain 21301 chr12 133275309 + 119439911 119440217 L1PA8 5853 + 5539 5843 54763 25 1 0 18 0 4 22 2 0 70 2 1 14 1 0 8 1 2 41 1 0 16 2 1 82 chain 14919 chr12 133275309 + 119445738 119446053 L1PB1 5432 + 5115 5413 62368 23 1 0 9 1 0 8 8 4 10 3 0 4 0 1 43 7 6 8 0 11 38 1 0 16 22 12 19 8 5 14 2 0 26 1 0 19 1 0 13 1 0 9 chain 2816 chr12 133275309 + 119488314 119488349 DNA1_Mam 279 - 125 159 101553 16 1 0 18 chain 5805 chr12 133275309 + 119489074 119489167 MER63A 208 + 50 140 81897 51 12 9 30 chain 3364 chr12 133275309 + 119492671 119492714 MIRb 242 + 53 94 96434 14 2 0 27 chain 58516 chr12 133275309 + 119525454 119526452 L1PA14 3548 + 90 3438 26811 58 4 0 69 1 0 17 37 34 31 2 0 31 2 2385 55 0 3 120 6 4 34 10 8 14 2 0 47 12 8 94 20 17 12 2 0 5 1 0 5 0 1 79 1 0 111 14 9 38 4 2 12 1 0 5 1 0 17 1 0 23 chain 22324 chr12 133275309 + 119591864 119592134 AluSg7 307 + 28 297 53374 103 0 1 151 2 0 14 chain 3101 chr12 133275309 + 119607336 119607368 tRNA-Ile-ATA 38 + 0 32 98788 32 chain 105840 chr12 133275309 + 119608957 119610449 THE1C-int 1605 + 17 1596 17586 93 0 54 51 0 6 108 0 6 110 3 10 37 9 10 185 0 5 11 0 1 21 31 26 23 15 15 218 5 6 101 17 16 22 25 26 151 0 13 173 0 1 40 3 0 40 chain 25782 chr12 133275309 + 119616664 119617033 THE1C 375 + 0 364 48048 35 1 0 144 0 2 5 28 23 141 1 0 14 chain 39623 chr12 133275309 + 119617046 119617552 THE1C-int 1605 + 2 520 34943 12 2 1 314 0 6 107 3 10 68 chain 24170 chr12 133275309 + 119651547 119651852 AluSc5 308 + 11 306 50541 115 10 0 180 chain 8481 chr12 133275309 + 119759681 119759796 MER1B 344 + 217 343 73716 56 1 12 58 chain 5262 chr12 133275309 + 119773959 119774263 L1MB2 1706 + 1492 1694 84378 12 1 0 3 105 0 46 109 113 28 chain 7888 chr12 133275309 + 119785886 119785985 MLT1D 503 + 404 503 75155 99 chain 9540 chr12 133275309 + 119799737 119799951 MER30 238 + 0 238 71389 23 0 1 4 2 0 17 58 80 28 1 7 39 3 0 39 chain 5653 chr12 133275309 + 119840334 119840402 MER5A 189 + 65 133 82546 68 chain 10782 chr12 133275309 + 119912735 119912884 LTR24C 604 + 0 154 68896 29 11 16 109 chain 27157 chr12 133275309 + 119934779 119935134 THE1A 353 + 0 353 46029 109 2 1 92 10 9 142 chain 86262 chr12 133275309 + 120044977 120045929 L1PA3long 6157 + 5201 6157 20366 103 0 4 849 chain 7445 chr12 133275309 + 120209079 120209232 MER30 238 + 67 235 76258 36 12 0 8 5 30 12 1 7 38 13 9 28 chain 26445 chr12 133275309 + 120311076 120311384 AluSp 311 + 0 311 47060 91 0 3 217 chain 86622 chr12 133275309 + 120335311 120336314 LTR13 1007 + 0 1007 20293 381 0 1 312 1 4 309 chain 6773 chr12 133275309 + 120506166 120506288 LTR54 533 + 2 118 78405 34 6 8 50 14 6 18 chain 45381 chr12 133275309 + 120606996 120607546 MLT2A2 560 + 0 560 31372 364 1 0 42 0 11 143 chain 438782 chr12 133275309 + 120607901 120613810 HERVL-int 5654 + 25 5654 4593 160 297 0 14 28 21 350 2 3 104 4 7 6 3 0 15 11 12 408 1 0 5 0 4 750 0 9 75 1 3 21 0 3 122 1 3 340 6 0 318 9 12 173 10 12 1211 0 1 180 11 15 363 0 8 465 2 0 76 0 1 5 7 8 37 16 11 73 4 0 81 1 0 4 18 19 121 chain 23512 chr12 133275309 + 120608065 120608348 AluSc 308 + 0 290 51571 14 0 6 197 0 1 72 chain 45722 chr12 133275309 + 120613810 120614359 MLT2A2 560 + 0 560 31199 402 0 11 147 chain 7375 chr12 133275309 + 120664905 120665132 L1MC1 2226 + 1896 2103 76460 18 1 0 9 17 12 20 40 37 56 21 15 13 12 7 20 chain 3615 chr12 133275309 + 120676128 120676171 MER3 215 - 0 43 94311 43 chain 20519 chr12 133275309 + 120685267 120685560 AluSc 308 + 10 304 55757 39 7 14 68 6 5 150 5 0 18 chain 68543 chr12 133275309 + 120838764 120839513 L1PA3long 6157 + 5403 6152 24324 749 chain 4695 chr12 133275309 + 120881828 120881885 L1MB3 1562 + 1356 1413 87293 57 chain 3262 chr12 133275309 + 120943274 120943371 MLT1B 390 + 234 331 97363 11 4 5 13 17 16 21 1 0 13 5 6 12 chain 4153 chr12 133275309 + 121046684 121046769 MLT1H 522 + 67 149 90448 38 23 20 24 chain 167224 chr12 133275309 + 121075346 121077614 SVA_D 2077 + 43 2061 11256 265 1 0 151 0 76 89 76 0 181 39 0 103 2 0 8 3 1 26 97 9 41 1 0 16 78 0 77 1 0 97 48 0 30 0 1 174 0 1 4 9 8 44 1 0 284 0 10 322 chain 2550 chr12 133275309 + 121076111 121076148 SVA_D 2077 + 808 845 31317 37 chain 6684 chr12 133275309 + 121076290 121076387 SVA_D 2077 + 1130 1228 31317 83 0 1 14 chain 3997 chr12 133275309 + 121076465 121076523 SVA_D 2077 + 1256 1314 31317 58 chain 8742 chr12 133275309 + 121103069 121103180 L1MA4 2864 + 2505 2616 73108 111 chain 4892 chr12 133275309 + 121163764 121163826 MER3 215 + 152 215 86190 4 0 1 58 chain 26095 chr12 133275309 + 121254828 121255204 MLT2A1 477 + 0 394 47582 131 1 20 18 0 4 29 0 1 28 14 15 78 1 0 14 2 0 47 4 0 9 chain 3468 chr12 133275309 + 121255387 121255430 MLT2A2 560 + 506 549 95472 43 chain 77396 chr12 133275309 + 121280126 121281181 MER11C 1089 + 9 1063 22222 214 1 3 21 0 9 61 0 4 65 1 0 176 18 16 15 40 21 4 0 1 71 1 5 4 1 0 38 1 2 126 0 1 54 1 0 117 0 1 25 chain 92324 chr12 133275309 + 121374282 121375813 LTR12C 1709 + 1 1709 19294 337 0 43 83 3 0 7 59 45 194 0 41 86 1 0 42 40 0 21 0 119 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133275309 + 121994051 121994096 SVA_F 1814 + 620 705 98531 12 0 40 33 chain 8118 chr12 133275309 + 122105706 122105793 AluYk11 308 + 208 295 74596 87 chain 25745 chr12 133275309 + 122251653 122251934 L1PA5 6144 + 5863 6144 48101 281 chain 161627 chr12 133275309 + 122356607 122358455 SVA_D 2077 + 0 2077 11635 14 0 4 445 0 39 78 0 1 247 40 0 80 3 0 7 4 140 38 1 0 10 2 0 237 1 0 7 0 98 613 1 0 14 1 0 5 chain 32039 chr12 133275309 + 122364897 122365245 L1PA3long 6157 + 5809 6157 40322 348 chain 3220 chr12 133275309 + 122373024 122373065 L1PB1 5432 + 5349 5389 97725 21 1 0 19 chain 21663 chr12 133275309 + 122543792 122544067 AluSp 311 + 24 300 54275 28 0 1 45 0 1 26 1 0 16 2 1 48 0 1 109 chain 114346 chr12 133275309 + 122591841 122593220 LTR12C 1709 + 0 1709 16498 436 0 1 172 2 1 182 1 319 6 2 0 107 0 4 97 0 4 24 0 1 58 2 3 25 2 6 263 chain 22985 chr12 133275309 + 122688824 122689110 AluSc 308 + 0 284 52384 26 1 0 97 1 0 161 chain 3807 chr12 133275309 + 122732764 122732805 MER102c 337 + 240 281 92795 41 chain 8215 chr12 133275309 + 122768098 122768198 HY3 101 + 0 100 74363 100 chain 139278 chr12 133275309 + 122809633 122811180 L1PA5 6144 + 4597 6144 13162 1547 chain 22050 chr12 133275309 + 123023649 123024583 L1MB7 1623 + 747 1475 53768 48 41 43 32 3 0 89 260 111 20 0 1 4 1 0 92 133 105 11 3 0 20 1 0 10 64 61 29 1 0 6 52 32 14 chain 3644 chr12 133275309 + 123067029 123067150 MLT1C 463 + 58 165 94064 37 65 51 19 chain 33702 chr12 133275309 + 123104299 123104791 LTR7 482 + 0 474 38924 86 50 0 12 18 17 115 0 31 158 12 14 41 chain 47225 chr12 133275309 + 123260008 123260594 LTR10C 591 + 0 591 30564 253 7 9 186 0 1 53 6 8 81 chain 8667 chr12 133275309 + 123372087 123372283 SVA_F 1814 + 646 1259 73305 55 54 338 21 0 136 43 7 4 16 chain 22953 chr12 133275309 + 123380138 123380430 AluSp 311 + 0 288 52433 52 10 7 51 2 1 177 chain 16151 chr12 133275309 + 123476274 123476464 AluSp 311 + 116 305 60810 16 1 0 173 chain 71029 chr12 133275309 + 123492656 123493573 LTR5_Hs 974 + 16 974 23754 105 6 7 85 1 0 26 0 35 11 0 1 181 0 1 188 1 0 163 8 15 31 8 6 103 chain 5515 chr12 133275309 + 123526975 123527047 MLT1D 503 + 39 118 83175 8 0 7 64 chain 10097 chr12 133275309 + 123539065 123539182 AluJb 308 + 156 273 70200 117 chain 7751 chr12 133275309 + 123545545 123545641 MER6 865 + 55 152 75487 92 0 1 4 chain 58582 chr12 133275309 + 123548417 123549154 LTR17 781 + 1 757 26795 58 1 0 97 1 0 171 1 0 368 2 24 38 chain 338205 chr12 133275309 + 123550957 123555268 HERV17-int 4347 + 13 4347 6104 14 1 0 50 2 1 34 2 0 27 1 0 151 2 332 86 0 2 79 1 0 684 1 0 4 0 1 133 309 4 224 7 10 123 0 5 171 0 1 1263 3 0 49 0 5 112 12 4 158 3 2 605 chain 55494 chr12 133275309 + 123557408 123558739 LTR17 781 + 0 757 27724 59 1 0 97 6 5 71 1 2 67 594 0 26 1 0 379 4 26 25 chain 7652 chr12 133275309 + 123575543 123575758 Tigger3a 397 + 138 371 75745 10 0 10 19 5 9 77 89 93 15 chain 5704 chr12 133275309 + 123640676 123640881 MER58B 340 + 87 315 82320 17 1 0 13 16 20 41 87 107 30 chain 3851 chr12 133275309 + 123644215 123644262 U3 216 + 11 58 92496 47 chain 3488 chr12 133275309 + 123655871 123655938 MER33 330 + 152 221 95329 18 15 17 34 chain 3795 chr12 133275309 + 123734890 123734933 MER113A 284 + 126 169 92889 43 chain 2894 chr12 133275309 + 123858621 123858668 L1MB7 1623 + 1386 1423 100876 7 10 0 30 chain 104859 chr12 133275309 + 123946762 123948105 LTR12C 1709 + 0 1709 17705 192 5 6 15 4 1 68 4 0 8 9 0 360 0 278 184 1 0 4 4 2 106 0 4 212 0 1 15 45 16 4 1 0 38 1 132 63 chain 5039 chr12 133275309 + 124028090 124028151 MIRb 242 + 67 128 85469 61 chain 33413 chr12 133275309 + 124047331 124047812 MER1A 529 + 42 529 39163 38 4 12 194 5 0 143 41 44 56 chain 31853 chr12 133275309 + 124075021 124075446 LTR7B 505 + 0 498 40455 105 0 10 60 0 38 12 3 27 26 0 2 79 1 0 27 0 1 54 14 13 44 chain 3706 chr12 133275309 + 124251306 124251366 MER53 195 + 132 194 93569 43 5 7 12 chain 4562 chr12 133275309 + 124298903 124298963 L1PB1 5432 + 5346 5404 88004 24 1 0 22 1 0 12 chain 7131 chr12 133275309 + 124424994 124425092 MER30 238 + 0 105 77164 18 1 8 79 chain 5295 chr12 133275309 + 124435847 124435913 MIR 256 + 63 129 84220 66 chain 13778 chr12 133275309 + 124473652 124473822 THE1B 368 + 199 368 63912 94 1 0 75 chain 2977 chr12 133275309 + 124487537 124487611 MER31B 477 + 115 313 100085 16 27 151 31 chain 13630 chr12 133275309 + 124533839 124534047 MER30 238 + 0 238 64116 16 0 1 7 6 24 52 2 0 5 4 17 116 chain 4202 chr12 133275309 + 124563954 124563998 MIR 256 + 72 116 90107 44 chain 4094 chr12 133275309 + 124584650 124584697 MADE1 96 + 47 94 90819 47 chain 21401 chr12 133275309 + 124598377 124598777 L1PA15 4387 + 3980 4366 54631 122 0 2 26 1 0 54 58 54 18 17 14 44 3 1 12 6 1 28 1 0 10 chain 3404 chr12 133275309 + 124629316 124629355 MER58B 340 + 170 209 96033 39 chain 32365 chr12 133275309 + 124630904 124631291 MER41A 554 + 0 387 40066 387 chain 4226 chr12 133275309 + 124707921 124708120 MLT1J 494 + 66 275 89964 13 10 16 7 6 0 35 103 113 25 chain 55755 chr12 133275309 + 124717838 124718627 HSMAR1 1287 + 1 1285 27646 85 1 3 18 23 27 7 3 0 18 0 5 141 5 0 8 8 498 341 5 7 126 chain 3233 chr12 133275309 + 124813150 124813186 MLT1J 494 + 122 158 97641 36 chain 2966 chr12 133275309 + 124871163 124871195 MER33 330 + 222 254 100223 32 chain 24505 chr12 133275309 + 124890344 124890627 AluSg7 307 + 18 302 50011 113 0 1 170 chain 6555 chr12 133275309 + 124939965 124940037 tRNA-Ala-GCG 72 + 0 72 79144 72 chain 24026 chr12 133275309 + 124989554 124989852 AluSg7 307 + 3 297 50761 106 1 0 23 3 0 165 chain 22441 chr12 133275309 + 125048460 125048708 L1PA3long 6157 + 5905 6155 53214 25 0 2 223 chain 30969 chr12 133275309 + 125147720 125148166 MLT2A1 477 + 0 477 41150 142 0 1 25 0 18 86 3 4 46 2 1 62 37 49 43 chain 4608 chr12 133275309 + 125197513 125197571 MER58A 224 + 50 108 87756 58 chain 6950 chr12 133275309 + 125218898 125219024 L1MB5 1630 + 1496 1619 77773 53 12 11 41 2 1 9 1 0 8 chain 4692 chr12 133275309 + 125256672 125256753 MADE1 96 + 0 96 87306 16 1 0 5 8 24 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52554 chr12 133275309 + 125725166 125725788 LTR14B 630 + 3 630 28712 547 0 5 75 chain 231680 chr12 133275309 + 125729415 125731947 L1PA3long 6157 + 3622 6157 8702 738 0 2 72 0 1 1722 chain 4288 chr12 133275309 + 125819144 125819207 MER77 626 + 9 77 89577 50 2 7 11 chain 20789 chr12 133275309 + 125849550 125849976 MSTA 426 + 0 426 55378 110 60 38 54 52 50 11 4 3 30 1 21 47 1 6 56 chain 45803 chr12 133275309 + 125877450 125877976 L1PA5 6144 + 4833 5359 31164 359 0 1 94 1 0 72 chain 28596 chr12 133275309 + 125912884 125913262 THE1C 375 + 0 375 43960 64 2 0 122 0 1 71 1 0 92 1 0 25 chain 61245 chr12 133275309 + 125964648 125965459 L1PA8 5853 + 5051 5853 26050 440 1 0 73 2 1 45 2 0 58 22 20 52 2 1 19 1 0 48 17 16 29 chain 77405 chr12 133275309 + 125974129 125975029 MER11D 897 + 0 897 22221 35 7 0 76 0 1 474 1 24 85 20 0 202 chain 51562 chr12 133275309 + 126041336 126041904 L1PA3long 6157 + 5586 6155 29012 428 0 1 140 chain 149305 chr12 133275309 + 126045122 126047230 L1PB1 5432 + 3340 5424 12400 56 1 2 334 1 4 164 4 0 47 11 9 370 0 14 281 3 0 87 1 0 63 1 2 264 9 10 5 1 0 51 26 24 11 1 0 9 16 11 11 6 4 47 2 1 10 7 6 44 1 0 15 3 0 7 13 5 18 12 9 11 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 170778 chr12 133275309 + 126052828 126054992 HERVL-int 5654 + 3454 5635 11065 249 1 0 235 0 1 362 0 16 369 0 1 136 2 1 75 1 4 78 0 3 234 1 0 8 12 3 112 0 11 72 2 0 5 4 0 206 chain 4750 chr12 133275309 + 126075472 126075525 THE1D 372 + 319 372 86963 53 chain 186927 chr12 133275309 + 126081360 126083593 L1PA7 6471 + 4213 6470 10256 140 0 1 319 0 4 925 0 4 97 2 1 65 7 22 499 20 21 159 chain 29677 chr12 133275309 + 126127433 126127961 L1PB1 5432 + 4929 5427 42394 174 13 11 24 2 1 7 1 0 10 20 14 50 2 1 16 1 0 43 1 0 16 27 19 12 2 0 4 1 0 15 1 0 24 2 1 20 1 0 13 1 0 14 1 0 5 1 0 4 chain 54490 chr12 133275309 + 126151601 126152182 L1PA2 6032 + 5450 6031 28050 581 chain 12812 chr12 133275309 + 126177157 126177488 L1PB1 5432 + 5134 5427 65426 12 1 0 12 26 14 48 2 1 11 13 12 37 1 0 15 24 12 13 30 25 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 5927 chr12 133275309 + 126250877 126250942 L1PB2 3958 + 3683 3748 81369 65 chain 4570 chr12 133275309 + 126257851 126257917 L1PA16 3655 + 3524 3590 87966 44 0 3 6 3 0 13 chain 25284 chr12 133275309 + 126279478 126279833 THE1B 368 + 0 368 48807 40 0 5 124 1 0 32 0 1 7 27 35 124 chain 31832 chr12 133275309 + 126284656 126285029 L1PA7 6471 + 6085 6458 40471 373 chain 173649 chr12 133275309 + 126380762 126383089 L1PB1 5432 + 2704 5026 10914 81 0 1 56 1 0 12 12 22 128 6 4 49 1 0 323 0 1 197 1 0 139 35 20 177 0 1 110 15 3 104 0 1 106 0 1 68 1 2 319 1 4 98 0 1 73 11 12 29 6 7 125 0 5 43 chain 18640 chr12 133275309 + 126390724 126390994 MER41A 554 + 290 554 57953 118 11 0 60 9 14 72 chain 27228 chr12 133275309 + 126420580 126420874 AluYb9 318 + 11 305 45932 294 chain 26783 chr12 133275309 + 126471802 126472129 L1PA7 6471 + 6139 6466 46565 70 0 1 247 1 0 9 chain 6945 chr12 133275309 + 126509694 126509776 MER85 139 + 14 96 77794 82 chain 6614 chr12 133275309 + 126533895 126534050 L1MA3 4352 + 4205 4322 78923 31 4 0 22 2 0 24 1 0 6 1 0 18 33 3 13 chain 39071 chr12 133275309 + 126541150 126541591 L1PA6 6164 + 5719 6160 35306 441 chain 5258 chr12 133275309 + 126568278 126568336 LTR12C 1709 + 1406 1464 84401 58 chain 7121 chr12 133275309 + 126783449 126783587 MER68B 564 + 168 308 77195 61 2 8 10 26 22 39 chain 37253 chr12 133275309 + 126835725 126836209 MER9a3 513 + 0 508 36586 17 0 2 160 5 6 73 1 0 60 0 21 94 0 1 74 chain 4409 chr12 133275309 + 126886197 126886294 MER84 505 + 407 505 88851 44 34 35 19 chain 18170 chr12 133275309 + 126893032 126893279 L1PA8 5853 + 5608 5853 58494 71 1 0 8 0 1 52 2 1 19 2 1 92 chain 20956 chr12 133275309 + 126946131 126946414 AluSp 311 + 38 309 55183 135 5 4 12 9 0 106 2 0 14 chain 12904 chr12 133275309 + 126988468 126988758 THE1D 372 + 79 372 65248 44 5 9 17 99 98 125 chain 32179 chr12 133275309 + 127001170 127002167 L1PB1 5432 + 4804 5427 40209 34 0 1 79 311 0 46 7 1 42 118 96 10 3 0 25 1 0 9 1 0 9 2 0 3 2 0 8 2 0 53 2 1 15 1 0 60 14 1 25 29 24 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 20156 chr12 133275309 + 127018093 127018306 AluYb8 318 + 105 318 56185 213 chain 22652 chr12 133275309 + 127045934 127046219 AluSq10 312 + 15 298 52897 160 7 5 118 chain 72530 chr12 133275309 + 127049166 127049982 L1PA5 6144 + 4510 5327 23425 189 0 1 627 chain 14231 chr12 133275309 + 127155809 127155984 HERVH-int 3825 + 3649 3825 63287 144 6 7 25 chain 36235 chr12 133275309 + 127157601 127158059 LTR7C 471 + 0 461 37247 89 9 10 67 0 3 238 1 0 32 0 2 10 2 0 10 chain 22042 chr12 133275309 + 127169536 127169801 AluSp 311 + 29 294 53782 265 chain 29238 chr12 133275309 + 127175897 127176209 AluYa5 310 + 0 310 42987 97 2 0 213 chain 5943 chr12 133275309 + 127321354 127321425 U1 164 + 0 71 81306 71 chain 6767 chr12 133275309 + 127412007 127412121 MER50 708 + 0 118 78423 35 20 24 59 chain 33594 chr12 133275309 + 127472803 127473267 MLT2A1 477 + 0 477 39003 61 12 0 108 4 1 212 24 52 43 chain 4823 chr12 133275309 + 127481221 127481280 LTR2 463 + 389 447 86586 19 1 0 39 chain 2589 chr12 133275309 + 127490277 127490322 MLT2A1 477 + 426 477 103069 11 3 8 20 0 1 11 chain 16145 chr12 133275309 + 127508461 127508855 L1MA5A 2387 + 1993 2306 60820 26 61 16 51 46 45 24 2 0 32 1 0 28 3 0 15 28 0 66 1 0 10 chain 33635 chr12 133275309 + 127538545 127538995 MER4A1 472 + 0 472 38974 230 1 22 16 1 0 131 14 16 57 chain 27343 chr12 133275309 + 127560424 127560798 THE1C 375 + 0 372 45773 122 3 0 64 3 1 37 0 3 88 0 1 17 12 11 28 chain 80572 chr12 133275309 + 127566119 127567061 L1PA6 6164 + 5211 6159 21520 103 1 5 332 0 1 153 0 1 353 chain 12042 chr12 133275309 + 127594967 127595128 MER30 238 + 41 237 66773 58 0 29 25 1 7 77 chain 10314 chr12 133275309 + 127598291 127598435 L1PA8 5853 + 5712 5853 69776 28 2 1 10 1 0 9 1 0 93 chain 23981 chr12 133275309 + 127609793 127610299 LTR21A 479 + 0 479 50821 24 1 0 9 30 0 19 45 40 161 32 12 12 40 68 74 1 0 6 8 10 44 chain 34257 chr12 133275309 + 127610366 127610791 LTR12F 595 + 0 595 38521 80 0 167 57 0 2 50 0 1 238 chain 453726 chr12 133275309 + 127610811 127616481 HERV9-int 5642 + 0 5642 4291 596 4 7 93 22 1 19 6 0 130 2 0 433 1 3 297 31 21 142 1 8 63 0 1 572 0 10 221 0 11 402 1 0 281 7 8 632 1 0 317 0 10 284 19 23 634 12 11 227 8 6 36 2 0 26 1 0 59 1 0 14 34 11 11 11 5 17 chain 31956 chr12 133275309 + 127623509 127623924 MER41B 635 + 0 417 40375 125 1 2 85 7 8 197 chain 22378 chr12 133275309 + 127643050 127643420 MER51B 395 + 0 395 53304 40 54 79 109 7 8 9 1 0 150 chain 13680 chr12 133275309 + 127657905 127658105 MSTA 426 + 214 411 64039 4 1 0 17 2 0 11 11 11 154 chain 23451 chr12 133275309 + 127756125 127756470 THE1B 368 + 2 368 51675 33 5 20 78 1 0 42 1 0 26 4 0 13 0 4 10 7 15 125 chain 32860 chr12 133275309 + 127756524 127756970 MER4A1 472 + 0 472 39620 15 8 10 23 0 3 196 8 29 196 chain 72564 chr12 133275309 + 127757533 127758469 L1PA8 5853 + 4925 5853 23417 14 11 12 59 2 0 554 1 0 44 2 0 22 0 1 46 3 2 9 2 0 52 2 1 13 8 7 92 chain 38636 chr12 133275309 + 127816474 127816984 L1PA8 5853 + 5330 5843 35618 52 0 2 180 1 0 44 2 0 36 0 8 23 5 4 11 1 0 50 2 1 18 5 4 80 chain 110853 chr12 133275309 + 127841038 127842275 L1PA3long 6157 + 4916 6157 16958 487 0 1 254 9 12 487 chain 184930 chr12 133275309 + 127863367 127865851 L1PB1 5432 + 2819 5281 10340 23 5 1 250 0 2 146 8 16 154 0 1 121 6 25 104 3 0 74 13 0 226 0 1 58 20 0 187 0 2 241 0 1 174 4 0 178 1 0 140 0 1 158 16 14 21 0 6 6 20 8 11 3 1 48 24 22 41 chain 545313 chr12 133275309 + 127865857 127871869 L1PA3long 6157 + 0 6146 1019 153 0 1 208 1 2 306 1 2 104 0 128 375 0 2 1045 1 0 260 0 2 3558 chain 2362 chr12 133275309 + 127945656 127945700 MLT1C 463 + 122 167 104400 18 1 0 5 4 6 16 chain 49588 chr12 133275309 + 127976094 127976752 L1PB1 5432 + 3755 4377 29734 205 8 9 87 38 1 320 chain 88830 chr12 133275309 + 127983198 127984510 LTR12C 1709 + 0 1709 19887 21 0 9 10 50 41 265 14 13 104 0 2 8 5 1 210 7 283 26 0 2 93 0 47 69 24 0 20 11 4 161 1 0 4 1 2 37 0 108 81 16 14 74 chain 28023 chr12 133275309 + 127995706 127996026 L1PA7 6471 + 6149 6467 44829 310 2 0 8 chain 34460 chr12 133275309 + 128004346 128004769 LTR2B 499 + 17 441 38390 5 0 1 4 1 0 136 0 1 277 chain 54600 chr12 133275309 + 128040200 128040966 MER4E 760 + 0 760 28009 150 22 16 64 0 2 101 1 5 206 5 1 6 4 0 54 5 6 62 14 15 72 chain 2747 chr12 133275309 + 128223524 128223559 LTR51 675 + 4 40 101991 20 0 1 15 chain 41674 chr12 133275309 + 128224324 128224873 MER41A 554 + 0 554 33575 87 1 2 245 2 0 96 0 1 22 0 6 7 6 5 83 chain 2653 chr12 133275309 + 128234259 128234296 LTR66 600 + 459 495 102710 17 1 0 19 chain 42747 chr12 133275309 + 128238020 128238569 MER41A 554 + 0 554 32918 84 1 5 68 3 4 393 chain 3517 chr12 133275309 + 128247781 128247823 LTR12C 1709 + 795 837 95122 42 chain 3995 chr12 133275309 + 128284207 128284252 MLT2B2 565 + 520 565 91480 45 chain 4078 chr12 133275309 + 128312714 128312762 MLT1C 463 + 343 391 90897 48 chain 14863 chr12 133275309 + 128396316 128396570 L1PA8 5853 + 5622 5853 62439 53 5 4 10 1 0 4 1 0 9 0 1 5 26 6 6 0 1 19 2 1 19 1 0 93 chain 14611 chr12 133275309 + 128430333 128430529 MER57F 435 + 9 205 62786 5 0 1 140 2 1 49 chain 161401 chr12 133275309 + 128435331 128437299 L1PA6 6164 + 4184 6158 11654 186 0 4 241 121 0 5 0 120 55 1 0 519 1 5 839 chain 5770 chr12 133275309 + 128450185 128450276 MER3 215 + 113 211 82037 54 8 15 29 chain 56543 chr12 133275309 + 128535879 128536537 L1PA6 6164 + 5493 6162 27412 605 0 10 11 0 1 42 chain 21236 chr12 133275309 + 128558257 128558612 THE1B 368 + 8 368 54838 154 42 47 4 0 1 18 1 0 10 1 0 62 17 18 46 chain 66602 chr12 133275309 + 128572869 128573603 L1PA5 6144 + 5401 6135 24796 734 chain 18284 chr12 133275309 + 128580207 128580426 AluY 311 + 73 288 58379 45 5 0 14 0 1 155 chain 25546 chr12 133275309 + 128582459 128582807 THE1A 353 + 0 347 48410 15 2 0 31 1 2 63 0 2 6 8 6 222 chain 10876 chr12 133275309 + 128600286 128600476 THE1C 375 + 157 350 68734 28 3 2 12 36 0 10 1 40 49 0 1 51 chain 4275 chr12 133275309 + 128834668 128836100 L1MA3 4352 + 3060 3561 67464 83 1305 374 44 chain 44905 chr12 133275309 + 128836197 128836710 MER9a1 513 + 0 513 31636 513 chain 504 chr12 133275309 + 128838404 128838573 L1MA3 4352 + 4134 4306 67464 17 12 23 61 4 0 23 2 0 24 1 0 6 2 1 17 chain 59569 chr12 133275309 + 128858118 128859199 MER4E1 777 + 0 770 26493 24 0 1 33 0 1 186 1 0 23 301 0 217 2 1 50 19 9 5 2 0 191 0 2 27 chain 13610 chr12 133275309 + 128995146 128995311 MER61A 341 + 176 341 64153 165 chain 7455 chr12 133275309 + 129068121 129068228 MLT1C 463 + 29 131 76233 95 5 0 7 chain 174758 chr12 133275309 + 129093247 129095192 L1PA4 6152 + 4202 6151 10853 569 0 1 56 0 3 1320 chain 165322 chr12 133275309 + 129103713 129106426 L1PA3long 6157 + 4316 6157 11392 4 0 1 1785 873 0 51 chain 63872 chr12 133275309 + 129105567 129106270 L1PA3long 6157 + 5297 6000 25439 703 chain 12721 chr12 133275309 + 129145823 129145988 MER107 203 + 0 186 65575 41 0 18 104 3 0 10 0 6 7 chain 27277 chr12 133275309 + 129149026 129149393 L1PA8 5853 + 5493 5853 45856 71 1 0 45 2 0 70 1 0 8 2 1 51 3 2 19 1 0 93 chain 4612 chr12 133275309 + 129223354 129223410 MLT1G3 592 + 265 321 87740 56 chain 60701 chr12 133275309 + 129252514 129253202 L1PA4 6152 + 5463 6152 26176 37 0 1 397 1 0 110 0 1 143 chain 35958 chr12 133275309 + 129264424 129265057 L1PB1 5432 + 4821 5424 37437 73 0 1 134 24 24 50 1 2 9 1 0 20 1 0 13 30 23 49 1 0 18 1 0 44 1 0 11 19 7 27 9 6 14 2 0 24 1 0 16 0 1 4 1 0 12 2 1 16 1 0 4 chain 151123 chr12 133275309 + 129267188 129268915 L1PA4 6152 + 4143 5887 12280 342 0 2 178 1 0 939 0 17 197 2 1 68 chain 2014 chr12 133275309 + 129341491 129341658 MER41C 542 + 15 184 39298 33 0 2 134 chain 166436 chr12 133275309 + 129341729 129343585 L1PA4 6152 + 4293 6151 11309 568 1 2 1175 0 1 112 chain 3583 chr12 133275309 + 129343951 129344248 MER41C 542 + 224 542 39298 79 6 27 212 chain 178196 chr12 133275309 + 129346548 129348719 L1PA8 5853 + 3683 5853 10669 226 7 9 416 1 0 338 1 0 337 0 2 71 0 2 480 1 0 46 2 0 69 1 0 61 2 1 19 1 0 23 3 4 66 chain 10447 chr12 133275309 + 129352940 129353062 MER41C 542 + 419 541 69528 122 chain 123207 chr12 133275309 + 129417221 129418726 L1PA8 5853 + 4366 5853 14993 227 1 0 230 0 1 4 2 0 182 0 1 170 0 1 79 16 4 213 0 1 85 1 0 46 3 1 71 1 0 8 1 0 50 2 1 19 1 0 93 chain 60828 chr12 133275309 + 129456926 129457602 L1PA4 6152 + 5477 6152 26153 519 0 6 9 7 0 141 chain 40706 chr12 133275309 + 129465232 129465688 L1PA4 6152 + 3924 4380 34145 306 0 1 131 1 0 18 chain 3597 chr12 133275309 + 129472264 129472304 L1PA8 5853 + 5524 5564 94449 40 chain 3474 chr12 133275309 + 129472305 129472349 L1PA8 5853 + 5564 5608 95419 44 chain 5629 chr12 133275309 + 129472351 129472416 L1PA8 5853 + 5608 5675 82659 51 0 2 14 chain 4245 chr12 133275309 + 129472421 129472483 L1PA8 5853 + 5679 5740 89847 10 2 0 11 0 1 39 chain 9138 chr12 133275309 + 129472485 129472598 L1PA8 5853 + 5741 5853 72263 19 1 0 93 chain 112016 chr12 133275309 + 129506250 129507846 L1PB1 5432 + 3858 5420 16810 439 3 2 24 10 11 151 1 2 48 0 2 89 3 0 183 3 0 289 24 25 13 1 0 10 1 0 11 6 2 8 2 0 53 2 1 10 10 9 37 12 11 8 3 0 3 10 0 28 8 5 16 2 0 22 1 0 21 1 0 13 1 0 16 chain 19659 chr12 133275309 + 129549308 129549664 THE1B 368 + 0 353 56846 107 14 16 45 68 65 7 1 0 66 7 6 41 chain 8235 chr12 133275309 + 129575144 129575313 Tigger2 2703 + 2473 2647 74317 12 9 12 65 35 37 48 chain 19070 chr12 133275309 + 129589084 129589445 THE1B 368 + 0 368 57468 71 1 2 35 8 9 52 75 81 56 8 7 55 chain 63690 chr12 133275309 + 129603521 129604333 L1PA8 5853 + 5046 5853 25479 475 0 3 40 6 5 39 2 0 71 1 0 10 1 0 18 1 0 16 20 19 18 1 0 93 chain 30083 chr12 133275309 + 129616453 129616832 THE1C 375 + 0 375 41972 125 3 0 224 1 0 26 chain 36894 chr12 133275309 + 129640687 129641206 MER1A 529 + 0 522 36821 18 1 7 377 5 6 19 38 34 61 chain 18115 chr12 133275309 + 129643565 129643787 MER4A1 472 + 0 224 58551 85 0 2 137 chain 24872 chr12 133275309 + 129675187 129675533 L1PA8 5853 + 5506 5847 49488 15 0 2 38 5 4 43 2 0 74 1 0 6 1 0 50 8 7 15 1 0 87 chain 27740 chr12 133275309 + 129686196 129686576 THE1C 375 + 0 375 45265 90 18 19 14 8 0 62 0 2 188 chain 22696 chr12 133275309 + 129694421 129694726 MER57A1 433 + 0 308 52832 36 10 12 240 1 2 18 chain 25466 chr12 133275309 + 129743264 129743609 THE1C 375 + 32 375 48528 93 10 7 162 0 2 53 1 0 26 chain 20762 chr12 133275309 + 129744842 129745195 THE1D 372 + 0 348 55416 46 10 1 53 0 1 62 2 1 20 52 56 108 chain 28699 chr12 133275309 + 129796526 129796890 L1PA7 6471 + 6109 6466 43801 28 6 4 313 5 0 12 chain 539819 chr12 133275309 + 129800707 129806698 L1PA3long 6157 + 4 6152 1351 148 0 1 209 1 2 162 4 0 60 0 27 57 1 2 10 0 3 92 1 129 5246 chain 31963 chr12 133275309 + 129866234 129866599 L1PA4 6152 + 5782 6148 40366 256 0 1 109 chain 25784 chr12 133275309 + 129886697 129887067 THE1C 375 + 0 375 48041 125 3 0 17 7 11 18 0 1 54 20 23 126 chain 33210 chr12 133275309 + 129930739 129931111 L1PA4 6152 + 5769 6143 39336 48 0 1 195 0 1 129 chain 25663 chr12 133275309 + 129934120 129934475 THE1B 368 + 0 368 48226 42 8 23 107 3 2 109 9 8 77 chain 16965 chr12 133275309 + 129947950 129948182 THE1C 375 + 10 243 59840 176 8 9 48 chain 3467 chr12 133275309 + 129995900 129995952 L1M 172 + 1 51 95474 37 3 1 12 chain 132642 chr12 133275309 + 130021871 130023418 LTR12C 1709 + 0 1709 13764 837 1 0 75 0 162 37 1 0 5 3 1 107 0 4 481 chain 6009 chr12 133275309 + 130113072 130113147 MER74A 558 + 439 518 81042 29 0 4 46 chain 50370 chr12 133275309 + 130190457 130191061 L1PA5 6144 + 5543 6142 29423 8 2 0 259 0 1 324 4 0 7 chain 20900 chr12 133275309 + 130211586 130211830 L1PA8 5853 + 5132 5376 55252 244 chain 7544 chr12 133275309 + 130232213 130232333 MSTB 430 + 306 415 76012 57 8 0 11 5 0 8 0 2 31 chain 6689 chr12 133275309 + 130237761 130237871 L1P4 1494 + 1303 1410 78671 46 6 5 33 8 6 17 chain 3463 chr12 133275309 + 130523252 130523292 MLT1A 405 + 217 257 95516 40 chain 127099 chr12 133275309 + 130586484 130587842 L1PA2 6032 + 4674 6032 14406 1358 chain 23301 chr12 133275309 + 130600187 130600801 LTR19A 502 + 0 419 51927 33 39 38 102 262 68 178 chain 4639 chr12 133275309 + 130604518 130604570 Tigger3b 1229 + 881 933 87601 52 chain 20234 chr12 133275309 + 130669350 130669685 THE1D 372 + 0 326 56098 51 9 0 39 6 7 14 1 2 53 20 21 6 1 0 22 0 1 7 3 0 103 chain 38608 chr12 133275309 + 130683468 130683957 MER41A 554 + 0 496 35636 167 0 1 262 0 1 38 1 6 21 chain 78006 chr12 133275309 + 130698608 130699468 L1PA4 6152 + 5018 5881 22099 470 1 4 389 chain 242177 chr12 133275309 + 130722066 130725818 L1PA14 3548 + 94 3485 8424 54 6 0 69 1 0 18 1 3 20 13 10 5 0 1 23 4 2 63 8 10 236 7 5 21 0 1 34 7 14 310 10 18 139 9 8 56 2 0 25 0 1 63 10 5 145 34 23 64 3 0 5 0 5 10 0 1 201 10 8 191 6 5 404 10 0 132 306 0 33 2 1 151 5 3 248 7 4 11 2 0 46 3 1 5 2 0 48 5 0 59 11 7 12 2 0 6 1 0 12 3 6 66 1 0 158 4 2 10 2 1 6 1 0 17 1 0 40 6 0 10 1 0 20 chain 15652 chr12 133275309 + 130741147 130741481 THE1B 368 + 0 368 61464 17 0 1 64 82 113 5 1 0 14 0 4 6 29 28 116 chain 13134 chr12 133275309 + 130768104 130768267 MER50 708 + 530 693 64875 163 chain 3969 chr12 133275309 + 130802063 130802111 L1MB8 1703 + 1319 1367 91644 48 chain 88362 chr12 133275309 + 130841179 130842507 MER11B 1079 + 1 1063 19974 263 3 0 308 280 23 177 6 0 291 chain 5736 chr12 133275309 + 130906850 130906947 HY1 111 + 13 111 82195 44 18 19 35 chain 36188 chr12 133275309 + 130937624 130938049 L1PA6 6164 + 5729 6162 37282 305 0 8 120 chain 40968 chr12 133275309 + 130969274 130969800 MER1A 529 + 0 529 33993 338 0 1 112 14 16 62 chain 4163 chr12 133275309 + 131006298 131006346 MIRc 230 + 69 117 90365 48 chain 6296 chr12 133275309 + 131167030 131167234 MLT1E2 623 + 366 598 80017 48 84 109 23 21 24 28 chain 36341 chr12 133275309 + 131173957 131174414 MER75 514 + 54 513 37180 366 0 4 64 2 0 25 chain 36180 chr12 133275309 + 131179524 131179965 L1PA7 6471 + 6026 6468 37287 136 7 8 66 0 1 82 1 0 149 chain 11681 chr12 133275309 + 131186228 131186703 L1MA6 2487 + 1790 2277 67425 40 140 133 18 34 67 7 0 1 4 1 0 7 3 0 47 7 10 44 34 38 16 41 23 32 chain 4921 chr12 133275309 + 131188109 131188169 L1MB5 1630 + 1099 1159 86050 60 chain 135817 chr12 133275309 + 131227628 131229312 LTR12C 1709 + 0 1709 13458 749 45 6 40 0 81 198 0 2 21 1 0 11 6 5 5 2 0 106 0 4 16 21 1 195 0 1 268 chain 2434 chr12 133275309 + 131228377 131228422 LTR12C 1709 + 1027 1072 55965 45 chain 20270 chr12 133275309 + 131253615 131253986 THE1D 372 + 0 357 56054 25 3 0 51 15 0 6 4 0 61 7 13 24 41 44 115 2 1 17 chain 24653 chr12 133275309 + 131281487 131281760 AluYg6 310 + 36 304 49789 250 5 0 18 chain 35970 chr12 133275309 + 131334870 131335387 LTR12F 595 + 0 584 37430 103 1 2 42 8 39 23 6 39 39 20 22 275 chain 383854 chr12 133275309 + 131335430 131340111 HERV9-int 5642 + 12 4694 5414 445 0 1 13 0 6 107 0 1 11 10 4 68 0 10 19 21 0 16 7 5 130 4 2 52 11 11 188 14 10 1196 0 3 258 0 7 361 0 1 5 0 2 75 0 1 13 7 3 171 0 1 156 0 3 488 0 5 153 4 2 445 1 2 232 chain 3393 chr12 133275309 + 131424564 131424626 L1MCc 1008 + 559 622 96132 37 9 10 16 chain 5859 chr12 133275309 + 131501146 131501219 MER2 342 + 140 213 81656 73 chain 26577 chr12 133275309 + 131512696 131513069 MLT2A1 477 + 0 385 46865 166 11 8 5 0 1 24 0 1 55 22 35 90 chain 20739 chr12 133275309 + 131515973 131516348 THE1D 372 + 0 372 55443 57 46 39 73 31 35 20 1 0 82 4 5 61 chain 5250 chr12 133275309 + 131516358 131516416 L1M3f 2199 + 1253 1311 84444 58 chain 44241 chr12 133275309 + 131625307 131625810 LTR6B 557 + 0 557 31988 38 0 46 456 0 8 9 chain 4858 chr12 133275309 + 131661062 131661153 5S 121 + 0 92 86378 12 24 25 55 chain 22641 chr12 133275309 + 131698920 131699229 MER1A 529 + 198 521 52921 82 0 1 61 0 6 42 0 3 69 15 19 40 chain 38572 chr12 133275309 + 132095736 132096292 LTR10A 586 + 0 586 35662 61 5 6 135 8 9 25 0 29 12 5 6 163 1 0 4 0 1 52 8 6 77 chain 83297 chr12 133275309 + 132102548 132103507 LTR13A 966 + 0 966 20965 180 0 2 317 0 5 462 chain 28582 chr12 133275309 + 132131244 132131743 LTR3A 482 + 25 473 43985 73 4 3 127 95 44 14 0 1 133 24 24 29 chain 2929 chr12 133275309 + 132158822 132158853 MLT1C 463 + 69 100 100597 31 chain 9690 chr12 133275309 + 132209096 132209244 MER41B 635 + 29 177 71073 57 17 16 24 0 1 50 chain 3268 chr12 133275309 + 132210711 132210766 HSMAR1 1287 + 685 743 97307 25 7 10 23 chain 5268 chr12 133275309 + 132701730 132701788 LTR23 429 + 326 384 84346 58 chain 77737 chr12 133275309 + 132810347 132811313 LTR13 1007 + 0 1007 22154 68 2 0 198 0 2 113 4 5 30 0 32 180 2 1 54 0 4 13 0 1 207 0 5 62 2 1 31 chain 23721 chr12 133275309 + 132815926 132816223 AluYk4 311 + 10 300 51247 282 7 0 8 chain 3563 chr12 133275309 + 132876359 132876475 Tigger4a 237 + 54 196 94725 20 50 58 32 1 19 13 chain 8794 chr12 133275309 + 132889316 132889424 MER4D1 891 + 546 656 73002 56 0 2 52 chain 30677 chr12 133275309 + 132889510 132889964 LTR7 482 + 0 477 41402 56 9 5 40 15 14 120 0 31 97 3 0 8 1 0 48 13 14 44 chain 263461 chr12 133275309 + 132889971 132894111 HERVH-int 3825 + 0 3825 7866 56 1 4 90 1 2 181 1 0 30 2 3 107 0 4 8 2 0 35 52 258 292 13 14 145 15 0 202 389 40 129 4 3 174 60 45 99 1 0 4 0 1 745 0 1 86 18 19 196 165 0 11 0 3 29 1 0 76 0 3 175 0 2 110 0 1 89 1 0 244 0 8 101 chain 31730 chr12 133275309 + 132898048 132898494 LTR7 482 + 0 477 40550 101 15 14 66 1 0 51 0 31 42 0 1 59 1 2 4 1 0 48 13 14 44 chain 24362 chr12 133275309 + 132903807 132904089 AluY 311 + 19 301 50231 86 1 0 27 0 1 168 chain 133156 chr12 133275309 + 132938570 132940115 LTR12C 1709 + 0 1709 13730 309 0 1 4 1 0 454 0 161 182 1 0 5 3 1 107 0 4 212 0 1 36 0 1 231 chain 37501 chr12 133275309 + 132949015 132949570 LTR14 556 + 0 556 36399 101 50 52 46 0 4 116 12 8 132 7 6 91 chain 75994 chr12 133275309 + 132963837 132964793 LTR13_ 950 + 8 950 22571 125 1 4 134 0 2 128 6 5 188 21 11 32 14 0 4 0 6 303 chain 10784 chr12 133275309 + 132971280 132971531 MLT1A1 405 + 156 405 68891 13 1 0 11 18 17 32 46 45 30 15 16 85 chain 73845 chr12 133275309 + 132976766 132977759 LTR13 1007 + 0 1007 23134 68 6 0 68 1 2 128 0 2 113 25 26 44 1 2 177 1 0 56 3 20 106 5 6 159 2 0 30 chain 33570 chr12 133275309 + 133079463 133079968 MER41A 554 + 0 547 39026 195 26 38 11 0 7 7 5 23 149 0 1 33 17 22 44 1 0 17 chain 22205 chr12 133275309 + 133112806 133113064 AluY 311 + 29 288 53546 103 0 1 155 chain 7264 chr12 133275309 + 133213272 133213362 L1MB3 1562 + 519 609 76786 90 chain 6225 chr12 133275309 + 133238464 133238545 HY3 101 + 10 98 80257 49 0 7 32 chain 454256 chr12 133275309 + 133244941 133250160 L1PA4 6152 + 1 5225 4281 419 0 1 815 0 1 440 0 1 1087 0 1 542 0 1 375 3 0 93 1 2 677 0 2 767 chain 498519 chr13 114364328 + 18182181 18188317 L1PA4 6152 + 10 6136 3181 93 38 63 50 3 2 197 0 3 9 4 1 166 23 7 321 3 7 23 24 0 80 4 5 4 1 0 133 12 3 825 0 1 748 0 1 412 0 1 202 0 1 512 0 1 527 0 1 466 0 4 415 0 1 841 chain 3289 chr13 114364328 + 18209106 18209161 L1MCa 1829 + 31 81 97112 6 5 0 17 0 1 18 1 0 8 chain 25654 chr13 114364328 + 18239661 18240023 L1PB 1623 + 649 1009 48236 46 1 0 161 24 23 130 chain 78020 chr13 114364328 + 18250954 18251919 LTR5_Hs 974 + 0 974 22095 418 1 2 32 0 4 203 0 1 32 0 2 82 7 7 21 0 1 169 chain 9262 chr13 114364328 + 18282705 18282825 MER5A1 166 + 8 138 71996 29 0 10 91 chain 4167 chr13 114364328 + 18287318 18287441 MIR 256 + 20 137 90335 24 7 3 26 26 32 6 0 2 15 10 0 9 chain 5379 chr13 114364328 + 18313993 18314144 MLT1F 544 + 91 304 83803 19 0 9 6 5 0 6 3 0 27 1 0 4 48 110 32 chain 171390 chr13 114364328 + 18426155 18429034 HERVIP10F-int 4088 + 239 2964 11027 12 4 0 15 3 0 7 4 2 12 1 0 19 1 0 8 13 1 12 54 32 9 1 0 3 6 0 17 2 0 29 23 12 6 1 0 7 1 0 14 3 2 16 1 0 4 3 1 11 3 0 14 20 15 18 1 0 31 1 0 33 1 0 5 3 2 5 1 0 15 1 0 10 2 1 13 1 0 21 1 0 7 1 0 28 2 0 6 1 0 48 8 5 33 1 0 6 1 0 60 1 0 5 1 0 26 1 0 11 1 0 16 33 23 4 1 0 21 1 0 4 4 1 7 1 0 30 1 0 41 2 0 11 1 0 21 1 0 5 1 0 5 1 0 5 3 1 24 8 5 22 1 0 14 1 0 41 1 0 26 1 2 71 1 0 38 4 0 13 1 0 4 19 12 17 8 7 4 1 0 6 1 0 24 2 1 20 0 1 7 1 0 59 11 9 19 1 0 30 3 0 32 10 9 23 4 3 9 10 7 403 1 0 21 1 0 64 2 1 82 1 0 77 2 1 12 2 1 134 1 0 5 0 1 284 0 11 205 chain 23228 chr13 114364328 + 18441870 18442241 L1PA8 5853 + 5489 5853 52038 68 8 7 43 3 1 70 29 27 35 2 1 17 4 3 92 chain 224313 chr13 114364328 + 18443055 18445692 L1PA5 6144 + 3498 6137 8915 175 1 0 3 1 0 272 0 1 61 1 2 466 0 2 142 1 0 469 17 17 413 0 2 170 4 4 9 1 0 431 chain 521725 chr13 114364328 + 18503477 18509621 L1PA4 6152 + 8 6152 2198 482 0 1 85 1 0 132 12 5 358 0 1 1163 0 1 1279 2 0 173 0 2 1202 0 1 385 0 4 19 2 1 17 1 2 56 1 3 766 2 0 6 chain 175113 chr13 114364328 + 18519560 18521525 L1PA2 6032 + 4066 6032 10826 703 0 1 1096 5 0 7 4 9 44 0 2 99 2 0 5 chain 26813 chr13 114364328 + 18604047 18604329 AluYb8 318 + 32 314 46518 282 chain 76266 chr13 114364328 + 18608079 18608909 L1PA2 6032 + 5202 6032 22496 830 chain 499471 chr13 114364328 + 18630874 18638085 L1PA6 6164 + 4 6162 3148 24 9 5 71 1 0 306 20 20 137 1 0 226 1 18 88 4 8 1243 0 6 68 0 1 100 0 2 255 0 4 65 1 0 297 0 18 225 0 1 108 0 1 1044 1111 0 17 0 4 277 0 1 106 0 3 117 4 5 362 0 1 608 1 2 314 chain 82533 chr13 114364328 + 18635174 18636279 MER11A 1151 + 0 1151 21115 79 0 8 207 0 11 45 37 0 38 0 1 22 0 1 96 5 6 320 1 59 192 1 0 26 0 4 36 chain 121076 chr13 114364328 + 18673285 18674678 SVA_D 2077 + 0 2037 15335 439 0 116 206 3 0 54 0 40 53 1 0 4 9 498 318 0 3 306 chain 18422 chr13 114364328 + 18703682 18703990 LTR7B 505 + 0 505 58203 51 0 1 56 57 254 79 14 13 51 chain 74671 chr13 114364328 + 18719994 18720917 LTR5_Hs 974 + 0 974 22920 134 0 1 26 0 2 122 0 1 65 0 1 75 0 35 357 8 15 37 2 0 20 0 6 77 chain 6926 chr13 114364328 + 18731156 18731246 MER30 238 + 136 232 77862 16 0 6 74 chain 69194 chr13 114364328 + 18855928 18856696 L1PA5 6144 + 5367 6135 24179 768 chain 24476 chr13 114364328 + 18928353 18928632 L1PA5 6144 + 5865 6144 50069 279 chain 40400 chr13 114364328 + 18977093 18977604 MER9a2 513 + 0 510 34385 258 0 18 10 20 1 223 chain 509214 chr13 114364328 + 18983770 18989849 L1PA5 6144 + 10 6135 2803 110 0 14 133 0 2 185 0 1 363 0 17 331 12 3 1101 0 4 24 0 1 14 0 1 225 1 0 297 1 2 21 1 4 307 1 0 344 7 10 160 0 1 248 0 1 24 3 4 148 0 1 233 1 5 279 4 6 637 2 1 634 0 1 228 chain 2781 chr13 114364328 + 19082489 19082549 L1MC1 2226 + 811 870 101756 14 16 15 30 chain 394245 chr13 114364328 + 19244522 19251247 L1PB1 5432 + 12 5427 5244 7 1 0 862 1 2 5 1 0 207 0 3 95 100 14 88 0 1 69 323 0 42 4 7 176 3 4 25 2 1 92 6 9 217 6 7 225 0 1 169 0 1 154 9 0 212 7 9 118 0 3 5 2 0 49 0 3 751 903 0 83 2 6 27 0 1 204 45 39 77 3 0 54 0 1 240 3 4 9 2 1 201 0 6 28 3 0 68 0 1 102 12 13 177 5 6 12 1 2 96 1 2 12 3 0 19 1 0 10 1 0 10 2 0 3 2 0 8 2 0 69 1 0 40 9 8 12 2 0 6 13 6 19 2 0 5 1 0 4 2 4 6 2 0 12 0 13 19 0 3 8 7 6 15 2 0 5 chain 50979 chr13 114364328 + 19264559 19265378 MER4E 760 + 5 753 29221 17 0 2 5 20 21 122 0 1 99 54 18 53 0 1 19 2 4 60 2 0 7 45 4 62 1 2 251 chain 99766 chr13 114364328 + 19270134 19272985 L1PA8 5853 + 50 2536 4456 22 2 0 8 65 28 197 22 10 227 2 3 88 0 6 10 6 0 18 3 1 265 4 0 638 311 0 334 0 2 72 1 0 42 1 2 513 chain 549656 chr13 114364328 + 19272995 19279012 L1PA2 6032 + 2 6027 775 254 1 0 454 0 7 209 0 1 394 0 1 4705 chain 115548 chr13 114364328 + 19279586 19282888 L1PA8 5853 + 2536 5853 4456 29 1 2 95 0 1 324 4 5 324 0 3 12 0 1 239 0 4 65 4 5 14 0 2 383 1 4 56 11 6 83 0 2 176 3 5 361 1 2 266 10 14 477 4 3 63 1 0 46 2 0 71 1 0 15 0 1 45 2 1 21 1 0 91 chain 39299 chr13 114364328 + 19343585 19344062 L1PA7 6471 + 5999 6469 35148 71 0 1 239 6 0 149 2 0 10 chain 12860 chr13 114364328 + 19381765 19381958 MER30 238 + 0 230 65329 18 1 19 58 17 34 28 0 2 71 chain 47096 chr13 114364328 + 19409946 19410567 LTR14B 630 + 10 630 30614 22 10 11 13 1 0 354 5 4 216 chain 92897 chr13 114364328 + 19478123 19479168 L1PA5 6144 + 5096 6143 19196 415 1 2 353 0 1 276 chain 287983 chr13 114364328 + 19496786 19500000 L1HS 6032 + 0 3216 7198 72 1 2 182 1 0 1107 0 2 1851 chain 254446 chr13 114364328 + 19500000 19502798 L1PA2 6032 + 3216 6019 8123 1815 0 5 983 chain 2829 chr13 114364328 + 19519180 19519210 L1MCb 1641 + 393 423 101402 30 chain 20100 chr13 114364328 + 19539230 19539527 THE1B 368 + 0 306 56257 169 1 0 29 0 3 8 4 8 11 22 25 53 chain 70994 chr13 114364328 + 19577583 19578375 L1PA4 6152 + 4721 5515 23763 250 2 0 333 0 4 207 chain 76599 chr13 114364328 + 19600217 19601185 LTR5_Hs 974 + 0 974 22415 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 13567 chr13 114364328 + 19624507 19624705 MER2 342 + 80 278 64222 17 2 1 108 10 11 61 chain 44803 chr13 114364328 + 19626321 19626835 MER9a2 513 + 0 513 31700 364 1 0 149 chain 255995 chr13 114364328 + 19627614 19630711 HERVK9-int 4720 + 36 4720 8091 13 8 5 4 1 0 66 1 0 8 1 0 1364 0 924 44 2 1 4 0 1 37 0 3 141 47 685 264 0 14 49 1 0 669 5 0 14 0 15 12 1 0 238 0 6 103 chain 44490 chr13 114364328 + 19630711 19631225 MER9a2 513 + 0 508 31835 12 7 1 495 chain 165448 chr13 114364328 + 19652132 19654196 L1P3 4156 + 0 2092 11383 251 1 0 69 1 0 89 1 0 329 0 2 431 0 10 26 0 4 64 4 6 109 0 3 26 0 3 70 0 3 132 0 1 41 11 12 309 1 3 99 chain 8408 chr13 114364328 + 19756256 19756402 MER51B 395 + 235 395 73883 10 1 0 29 1 0 20 12 24 12 1 5 60 chain 6547 chr13 114364328 + 19775414 19775593 MER2 342 + 161 337 79167 63 0 1 5 86 82 25 chain 166387 chr13 114364328 + 19778408 19780825 SVA_F 1814 + 9 1809 11311 882 629 0 56 0 15 39 1 0 10 1 0 166 1 0 4 1 0 290 1 0 12 0 2 324 chain 2851 chr13 114364328 + 19779329 19779362 SVA_F 1814 + 931 978 41991 16 1 15 16 chain 21776 chr13 114364328 + 19779362 19779903 SVA_F 1814 + 914 1213 41168 34 128 15 193 129 0 57 chain 10885 chr13 114364328 + 19779396 19779522 SVA_F 1814 + 1012 1138 41991 126 chain 8229 chr13 114364328 + 19779733 19779823 SVA_F 1814 + 1170 1260 74326 90 chain 3277 chr13 114364328 + 19874870 19874911 L1PA17 2846 + 2641 2691 97210 7 0 9 34 chain 60937 chr13 114364328 + 19916177 19916868 L1PA6 6164 + 5467 6160 26127 37 0 3 644 1 0 9 chain 18205 chr13 114364328 + 19999192 19999507 Tigger1 2417 + 0 318 58456 19 9 10 20 12 11 196 33 36 26 chain 5153 chr13 114364328 + 20008431 20008535 MER44A 345 + 180 304 84896 30 0 1 27 27 46 20 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252 0 8 26 0 14 421 0 1 127 2 0 266 10 11 160 0 1 115 1 0 47 2 0 69 2 1 9 1 0 51 3 2 19 1 0 93 chain 3527 chr13 114364328 + 20343784 20343826 LTR12F 595 + 104 146 95044 42 chain 29021 chr13 114364328 + 20386606 20386970 THE1B 368 + 0 368 43291 40 0 5 127 2 1 195 chain 164737 chr13 114364328 + 20408685 20410542 L1PA3long 6157 + 4331 6156 11431 687 37 5 800 0 1 80 1 0 252 chain 4982 chr13 114364328 + 20434294 20434459 LTR12F 595 + 47 169 85742 33 24 0 11 61 26 20 0 16 16 chain 54889 chr13 114364328 + 20451236 20452107 L1PA16 3655 + 2688 3563 27909 212 1 0 53 0 3 24 0 2 15 0 1 80 4 6 120 1 0 40 72 74 77 49 45 123 chain 25164 chr13 114364328 + 20458970 20459258 AluY 311 + 17 305 49016 106 1 0 9 0 1 172 chain 22293 chr13 114364328 + 20506853 20507205 THE1B 368 + 0 367 53419 169 1 0 29 37 52 25 14 15 77 chain 38985 chr13 114364328 + 20543403 20543880 LTR15 485 + 0 484 35364 74 1 0 226 0 12 121 4 0 51 chain 35761 chr13 114364328 + 20564822 20565620 LTR10F 562 + 0 560 37560 40 0 2 36 309 0 29 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21346015 21346057 5S 121 + 0 42 93607 42 chain 10230 chr13 114364328 + 21370413 21370845 MER2 342 + 159 294 69944 92 297 0 43 chain 161765 chr13 114364328 + 21447320 21449235 SVA_F 1814 + 10 1812 11626 888 78 0 50 47 14 48 51 0 79 0 49 674 chain 7345 chr13 114364328 + 21448208 21448286 SVA_F 1814 + 1011 1089 55248 78 chain 4047 chr13 114364328 + 21448336 21448383 SVA_F 1814 + 963 1011 49056 37 0 1 10 chain 4391 chr13 114364328 + 21448431 21448482 SVA_F 1814 + 1137 1186 49056 33 1 0 15 1 0 1 chain 26568 chr13 114364328 + 21544956 21545388 L1MA5A 2387 + 1771 2187 46876 37 10 7 20 0 1 74 13 12 18 3 0 4 2 0 70 5 2 17 0 1 6 2 0 68 1 0 22 1 0 26 2 0 31 chain 190350 chr13 114364328 + 21553497 21555603 L1PA4 6152 + 1950 4071 10096 250 0 2 921 0 9 45 1 0 81 0 5 808 chain 37086 chr13 114364328 + 21582526 21582993 LTR10F 562 + 0 561 36690 33 0 4 7 0 4 58 0 84 41 3 0 80 0 5 245 chain 91117 chr13 114364328 + 21588031 21589454 HERVIP10FH-int 2884 + 1441 2876 19480 27 6 1 115 11 220 102 0 1 143 0 1 132 0 1 67 1 0 23 1 0 30 4 3 103 0 2 119 0 4 82 0 1 21 1 0 66 1 0 50 1 0 17 4 3 10 11 5 34 207 22 9 2 0 16 2 0 5 chain 40151 chr13 114364328 + 21589513 21590048 LTR10F 562 + 0 562 34556 106 0 28 93 2 5 12 14 10 46 4 0 61 8 11 132 0 1 57 chain 356473 chr13 114364328 + 21590048 21594988 L1PA8A 6298 + 1780 6290 5842 70 4 0 21 0 3 299 441 0 252 0 9 76 2 0 107 1 8 20 0 1 49 5 0 37 1 0 232 6 10 167 1 12 206 1 2 11 12 6 27 2 0 28 0 3 10 1 4 254 0 1 126 0 2 45 0 1 67 5 1 192 1 0 337 0 2 50 0 3 68 1 0 226 23 20 44 16 1 302 0 1 260 0 21 13 26 4 77 0 2 204 0 2 514 chain 25116 chr13 114364328 + 21597645 21597952 AluY 311 + 0 304 49091 36 5 1 95 0 1 171 chain 27671 chr13 114364328 + 21713452 21713773 L1PA5 6144 + 5811 6132 45365 321 chain 3116 chr13 114364328 + 21733305 21733339 MER102c 337 + 295 329 98651 34 chain 19976 chr13 114364328 + 21853330 21853572 AluY 311 + 14 293 56418 118 0 1 6 1 37 117 chain 76314 chr13 114364328 + 21900558 21901414 L1PA4 6152 + 5299 6152 22486 848 3 0 5 chain 21393 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114364328 + 22820561 22820816 L1PA8 5853 + 5555 5810 58957 9 1 0 43 2 0 68 17 15 50 2 1 15 0 6 48 chain 117506 chr13 114364328 + 22870803 22872330 THE1B-int 1605 + 0 1599 15973 48 0 1 105 0 1 118 0 6 95 22 86 216 1 2 98 0 1 61 6 4 188 6 7 456 0 1 64 2 1 36 1 0 4 chain 37825 chr13 114364328 + 22880290 22880761 LTR2B 499 + 12 499 36188 62 3 0 37 0 19 178 0 1 8 1 0 182 chain 15715 chr13 114364328 + 22881767 22882048 MER4A1 472 + 127 422 61390 7 1 0 87 60 73 109 1 3 16 chain 275382 chr13 114364328 + 22885094 22889375 Harlequin-int 5206 + 126 5202 7572 21 2 0 79 0 1 61 0 1 17 1 3 49 0 5 36 1 7 78 2 0 184 0 2 216 1 779 185 0 1 100 17 24 199 10 1 16 4 3 64 5 4 229 1 0 250 0 6 181 1 0 392 126 135 35 0 1 26 17 17 45 63 64 30 7 0 9 0 7 27 174 174 253 203 197 218 36 37 348 8 8 228 6 3 20 chain 101989 chr13 114364328 + 22890869 22892766 MER4-int 2692 + 1085 2692 18063 20 1 0 48 1 0 17 300 0 169 0 1 23 5 0 27 1 17 25 3 2 19 17 18 62 13 17 168 1 0 34 1 3 58 3 5 73 2 0 47 18 10 121 0 1 33 5 6 19 22 19 56 1 0 79 8 5 86 0 2 5 6 5 41 2 4 36 2 1 46 1 0 54 1 11 49 5 2 20 8 7 17 7 8 11 chain 40491 chr13 114364328 + 22902961 22903451 MER9a1 513 + 0 513 34316 206 0 1 42 0 22 242 chain 27191 chr13 114364328 + 22923694 22924022 L1PA7 6471 + 6137 6467 45980 175 9 11 144 chain 24785 chr13 114364328 + 22951153 22951495 MER9a3 513 + 111 505 49610 68 9 33 46 0 17 18 2 12 131 0 1 68 chain 8780 chr13 114364328 + 22978512 22978644 MLT1A 405 + 13 146 73037 12 1 0 7 6 7 43 0 1 63 chain 256641 chr13 114364328 + 23007391 23010524 HERVK9-int 4720 + 36 4720 8071 13 8 5 4 1 0 66 1 0 7 2 1 30 1 0 800 1 0 524 10 934 42 5 3 186 51 689 970 1 0 410 chain 42985 chr13 114364328 + 23010524 23011038 MER9a2 513 + 0 513 32782 15 1 0 7 0 1 127 0 1 305 2 0 57 chain 34278 chr13 114364328 + 23017642 23018066 MER11B 1079 + 0 421 38511 264 18 15 142 chain 50829 chr13 114364328 + 23050136 23050757 PABL_A 660 + 0 650 29267 20 0 15 49 0 9 91 0 1 253 0 2 178 0 2 30 chain 23114 chr13 114364328 + 23085578 23085939 MER39B 650 + 297 650 52189 44 5 6 192 26 18 35 1 0 24 8 9 5 1 0 20 chain 142869 chr13 114364328 + 23127393 23129090 LTR12C 1709 + 0 1702 12870 133 0 5 331 0 1 367 1 0 274 1 0 6 2 0 107 0 4 408 1 0 66 chain 27866 chr13 114364328 + 23155742 23156156 L1PB3 3668 + 2567 2984 45084 99 12 15 73 6 5 89 0 1 109 6 6 20 chain 22696 chr13 114364328 + 23169403 23169677 AluSc 308 + 5 279 52831 136 3 0 6 0 3 129 chain 2988 chr13 114364328 + 23222046 23222080 MER57B2 428 + 0 34 99991 34 chain 32612 chr13 114364328 + 23313726 23314138 MLT2A1 477 + 0 413 39854 169 0 4 68 2 3 141 4 0 28 chain 248378 chr13 114364328 + 23314525 23317811 HERVL-int 5654 + 7 5654 8281 45 0 2629 717 5 0 4 0 1 863 0 1 98 4 8 419 0 1 231 293 0 25 0 3 292 0 3 22 5 4 51 1 7 64 0 1 89 0 3 49 0 8 9 chain 31314 chr13 114364328 + 23317811 23318271 MLT2A1 477 + 0 477 40880 138 0 1 30 1 5 31 0 15 102 2 1 62 49 47 45 chain 18403 chr13 114364328 + 23351313 23351683 THE1B 368 + 0 368 58241 108 0 13 13 85 59 20 1 5 10 6 14 64 8 7 55 chain 25987 chr13 114364328 + 23387859 23388403 L1PB3 3668 + 3104 3466 47732 117 4 5 62 1 0 102 2 1 33 181 0 42 chain 34448 chr13 114364328 + 23399065 23400083 LTR19A 502 + 0 502 38397 162 561 7 50 3 40 52 1 2 189 chain 189835 chr13 114364328 + 23404247 23406536 L1PA7 6471 + 4133 6467 10129 473 0 2 60 0 12 316 1 0 282 0 4 80 1 4 150 0 11 86 1 0 10 0 3 92 5 8 185 4 11 124 0 1 89 0 1 148 1 0 34 2 3 145 chain 24055 chr13 114364328 + 23444723 23445059 THE1B 368 + 22 368 50721 146 1 0 32 0 2 5 9 10 89 5 13 49 chain 91015 chr13 114364328 + 23446495 23447498 L1PA3long 6157 + 5153 6157 19502 854 1 2 148 chain 3188 chr13 114364328 + 23464818 23464855 MER47A 366 + 66 103 98011 37 chain 9849 chr13 114364328 + 23509037 23509198 Tigger3b 1229 + 574 920 70722 5 3 0 11 0 189 109 10 9 23 chain 56591 chr13 114364328 + 23524475 23525256 LTR12C 1709 + 574 1708 27392 79 0 119 65 1 0 166 0 166 46 45 14 227 0 101 68 1 0 83 chain 6198 chr13 114364328 + 23532237 23532311 LTR12C 1709 + 654 728 80364 74 chain 338739 chr13 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218 0 4 577 chain 34773 chr13 114364328 + 24373281 24373734 MER9a3 513 + 0 505 38178 18 4 29 63 0 1 56 0 15 74 1 0 39 0 10 106 0 1 24 0 1 68 chain 89123 chr13 114364328 + 24375387 24376393 LTR13 1007 + 0 1007 19833 241 0 2 62 1 0 702 chain 15206 chr13 114364328 + 24394238 24394434 THE1B 368 + 0 200 62035 35 0 5 129 1 0 31 chain 72614 chr13 114364328 + 24463514 24464376 L1PA10 4194 + 3303 4161 23395 813 3 0 34 1 0 11 chain 62082 chr13 114364328 + 24479428 24480177 LTR12C 1709 + 633 1701 25850 161 8 324 98 8 12 399 6 5 69 chain 4988 chr13 114364328 + 24530167 24530226 L1PA16 3655 + 192 251 85712 59 chain 72235 chr13 114364328 + 24591592 24592530 LTR5_Hs 974 + 0 974 23477 115 7 35 5 0 2 244 0 1 56 1 5 196 0 1 74 4 0 42 7 7 14 0 4 173 chain 30027 chr13 114364328 + 24628514 24628935 LTR7B 505 + 0 496 42026 108 0 10 49 1 2 6 0 38 12 3 27 26 1 3 81 1 0 79 12 13 42 chain 17558 chr13 114364328 + 24631781 24631993 MER41A 554 + 340 554 59167 43 0 1 43 0 1 126 chain 72378 chr13 114364328 + 24646275 24647145 MER11D 897 + 0 897 23456 132 0 2 15 2 3 324 0 1 115 1 24 281 chain 29870 chr13 114364328 + 24696424 24696746 AluYb8 318 + 0 316 42166 118 6 0 198 chain 22774 chr13 114364328 + 24771737 24772015 AluSp 311 + 14 288 52713 63 0 1 203 5 0 7 chain 374035 chr13 114364328 + 24835455 24840843 L1PB1 5432 + 84 5391 5586 109 1 0 4 1 3 196 7 5 5 0 2 101 0 9 73 3 13 156 0 6 56 21 46 84 87 0 60 0 1 10 1 5 145 1 0 128 4 0 94 1 0 7 2 0 5 3 0 90 0 1 188 0 1 227 0 4 13 0 2 108 1 7 11 1 17 118 0 4 74 0 1 44 1 0 8 0 2 77 0 1 33 4 13 44 2 0 73 11 1 15 1 3 132 1 0 10 0 1 112 0 4 39 0 3 110 0 1 104 6 9 40 7 6 41 1 7 12 0 3 61 10 11 130 2 1 304 1 4 114 18 4 15 49 0 214 0 2 95 0 1 452 4 9 135 4 1 47 9 13 269 9 2 9 23 0 33 20 15 5 2 0 53 2 1 16 1 0 29 43 45 16 24 19 24 1 0 21 chain 5178 chr13 114364328 + 24836272 24836335 L1PB1 5432 + 865 928 83210 63 chain 36744 chr13 114364328 + 24887317 24887807 MER1A 529 + 41 528 36926 8 0 1 45 5 1 153 0 1 179 6 4 24 3 4 67 chain 3795 chr13 114364328 + 24918723 24918766 Tigger2a 444 + 148 191 92890 43 chain 57658 chr13 114364328 + 24927213 24927964 HERVK22-int 3844 + 9 760 27066 33 3 0 159 2 1 105 1 0 13 10 15 95 0 1 4 1 0 325 chain 7720 chr13 114364328 + 24940167 24940300 Tigger3a 397 + 162 300 75566 17 0 4 58 25 26 33 chain 20540 chr13 114364328 + 25020047 25020368 LTR7B 505 + 81 441 55730 27 0 10 53 43 79 5 1 0 17 7 0 6 0 2 85 1 0 76 chain 229929 chr13 114364328 + 25052335 25055519 L1PB1 5432 + 2294 5424 8749 205 4 5 15 0 1 187 0 1 134 2 0 44 0 3 12 7 8 185 0 1 117 0 1 509 8 0 150 1 0 330 5 8 142 10 1 272 10 0 83 1 0 211 12 21 106 0 1 5 1 0 51 3 2 9 7 0 12 14 8 13 26 20 53 6 5 12 1 0 43 1 0 14 4 1 16 9 0 13 11 8 14 2 0 24 1 0 14 11 10 10 1 0 16 1 0 4 chain 38591 chr13 114364328 + 25116178 25116711 MER41C 542 + 15 542 35645 214 5 8 73 9 8 21 16 7 17 1 0 4 0 1 34 0 1 139 chain 26972 chr13 114364328 + 25154616 25155028 MSTC 436 + 2 436 46306 64 3 19 12 4 14 10 8 9 103 23 15 54 0 3 131 chain 26922 chr13 114364328 + 25207613 25208037 LTR64 526 + 2 430 46376 5 2 0 12 4 6 18 0 8 37 6 3 105 2 0 20 1 6 118 1 0 6 17 14 70 chain 14321 chr13 114364328 + 25213269 25213470 MER30 238 + 30 238 63166 73 9 20 69 3 0 22 1 0 24 chain 39607 chr13 114364328 + 25359665 25360128 LTR2 463 + 0 463 34957 463 chain 222654 chr13 114364328 + 25361451 25363988 L1PA5 6144 + 3590 6129 8964 49 3 0 897 0 3 1273 0 1 303 1 2 11 chain 3575 chr13 114364328 + 25392937 25392975 LTR24C 604 + 566 604 94631 38 chain 12149 chr13 114364328 + 25407917 25408078 L1PA8 5853 + 5694 5853 66577 46 2 1 19 1 0 93 chain 27452 chr13 114364328 + 25427148 25427543 MER1A 529 + 94 520 45635 40 2 1 48 0 30 192 0 1 37 31 32 45 chain 22875 chr13 114364328 + 25482591 25482968 THE1B 368 + 0 368 52543 17 2 0 94 0 3 6 8 6 43 31 24 11 3 0 6 0 3 74 7 6 75 chain 33037 chr13 114364328 + 25547309 25547739 MER1A 529 + 93 528 39488 71 0 1 291 11 15 57 chain 19886 chr13 114364328 + 25594734 25594971 L1PB1 5432 + 4866 5103 56552 237 chain 424784 chr13 114364328 + 25637160 25642300 L1PA3long 6157 + 36 5196 4817 371 24 25 142 0 1 122 0 7 119 33 36 6 3 0 646 0 1 501 0 4 2416 0 2 313 0 3 423 0 1 21 chain 80385 chr13 114364328 + 25671005 25672061 MER11C 1089 + 0 1073 21553 246 0 9 35 23 27 69 1 0 304 1 5 4 1 0 36 9 10 120 0 1 54 1 0 144 0 1 8 chain 6457 chr13 114364328 + 25838773 25838848 L1P1 4361 + 2 77 79486 75 chain 386989 chr13 114364328 + 25953558 25958311 L1PA7 6471 + 3 6469 5371 409 2 0 601 9 6 139 0 14 435 0 1741 39 12 0 116 7 6 500 0 1 122 0 1 178 0 5 568 0 1 70 1 0 348 1 0 84 0 1 73 0 1 22 0 5 125 1 4 93 3 0 483 17 0 163 24 8 58 3 1 35 2 0 10 chain 25814 chr13 114364328 + 26002244 26002570 L1PA6 6164 + 5833 6162 47998 138 4 5 175 0 2 9 chain 244993 chr13 114364328 + 26102982 26106382 L1P3 4156 + 31 3158 8350 217 15 14 60 1 0 6 3 0 5 6 11 63 15 0 183 5 11 45 6 9 157 0 1 34 0 1 37 297 2 56 0 15 62 17 19 88 7 16 161 1 3 531 2 1 210 0 4 331 0 1 131 0 2 120 9 1 519 chain 27567 chr13 114364328 + 26103848 26104137 AluYd8 298 + 1 290 45492 289 chain 68251 chr13 114364328 + 26109750 26110521 L1PA5 6144 + 5372 6144 24394 149 0 2 288 1 0 333 chain 20667 chr13 114364328 + 26118606 26118849 AluYc 301 + 44 289 55546 70 0 2 173 chain 94832 chr13 114364328 + 26164811 26165995 THE1B-int 1605 + 397 1605 18931 4 1 0 31 3 28 1145 chain 27314 chr13 114364328 + 26166339 26166671 L1PREC2 3366 + 2206 2538 45810 332 chain 3376 chr13 114364328 + 26217642 26217786 MER3 215 + 36 88 96327 40 92 0 12 chain 55178 chr13 114364328 + 26312017 26312724 LTR12_ 688 + 0 688 27819 24 1 0 70 1 0 51 42 25 518 chain 4311 chr13 114364328 + 26333067 26333133 Tigger4 2445 + 2139 2205 89440 32 3 1 13 0 2 18 chain 3140 chr13 114364328 + 26412465 26412571 LTR16E2 555 + 259 364 98472 15 58 57 33 chain 11137 chr13 114364328 + 26430656 26430845 L1P4 1494 + 105 274 68352 19 2 1 20 32 13 116 chain 13844 chr13 114364328 + 26509520 26509686 LTR5B 1012 + 845 1012 63802 128 0 1 38 chain 16503 chr13 114364328 + 26579894 26580135 MER30 238 + 0 238 60366 107 23 26 20 6 0 85 chain 10966 chr13 114364328 + 26627769 26627899 L1PA2 6032 + 5902 6027 68602 119 5 0 6 chain 53240 chr13 114364328 + 26669847 26670503 L1PA7 6471 + 5801 6468 28488 416 0 4 14 1 0 24 0 6 33 0 1 17 9 8 75 0 2 67 chain 148782 chr13 114364328 + 26723182 26724827 SVA_D 2077 + 58 2073 12436 114 0 12 694 0 310 152 1 2 10 0 49 44 1 0 321 1 0 307 chain 20535 chr13 114364328 + 26739380 26739720 THE1B 368 + 0 368 55739 13 2 0 12 10 30 114 1 0 28 36 46 26 2 3 96 chain 5292 chr13 114364328 + 26776068 26776132 Tigger3a 397 + 135 202 84238 42 0 3 22 chain 17440 chr13 114364328 + 26791690 26792038 THE1B 368 + 0 368 59302 81 52 54 34 10 9 19 20 0 9 0 40 60 7 6 56 chain 59748 chr13 114364328 + 26850312 26851061 MER4E 760 + 0 752 26447 24 2 0 127 11 14 54 0 1 112 7 6 31 0 2 381 chain 23342 chr13 114364328 + 26903298 26904116 THE1B 368 + 0 368 51862 44 0 15 77 513 48 184 chain 16171 chr13 114364328 + 26947755 26948079 L1MB3 1562 + 1236 1559 60786 99 1 2 14 1 0 70 42 23 36 37 55 24 chain 9669 chr13 114364328 + 27051539 27051757 L1PB1 5432 + 5167 5366 71118 50 9 8 12 2 1 43 40 28 18 8 5 14 2 0 20 chain 8854 chr13 114364328 + 27078260 27078416 MER2 342 + 136 315 72853 47 2 24 69 23 24 15 chain 73104 chr13 114364328 + 27107736 27108532 L1PA3long 6157 + 5350 6146 23298 796 chain 66298 chr13 114364328 + 27125488 27126425 L1P2 5180 + 2 939 24875 149 1 0 43 2 1 49 16 15 70 3 4 115 28 13 54 1 0 48 1 0 38 0 1 32 1 0 45 9 8 62 0 1 37 0 15 98 0 4 35 chain 18206 chr13 114364328 + 27167063 27167277 AluSp 311 + 84 297 58455 48 1 0 165 chain 24417 chr13 114364328 + 27192455 27192804 THE1B 368 + 0 368 50141 44 6 21 104 1 0 24 2 0 5 0 2 9 3 10 72 3 0 27 1 2 48 chain 71959 chr13 114364328 + 27211990 27213118 LTR12D 1347 + 0 1347 23552 117 157 216 149 4 2 12 0 2 38 0 31 18 6 5 18 0 41 50 14 7 101 1 0 179 0 97 264 chain 88404 chr13 114364328 + 27219588 27220817 LTR12D 1347 + 0 1347 19965 203 22 23 39 19 19 13 8 44 120 41 0 74 4 35 20 1 0 104 2 19 309 2 76 18 6 7 224 chain 65439 chr13 114364328 + 27220909 27223018 L1PA15 4387 + 2940 4355 25085 122 9 17 89 4 0 174 0 2 34 7 8 20 23 25 246 6 0 10 993 311 102 122 117 39 17 14 44 3 1 14 5 0 26 chain 21057 chr13 114364328 + 27392255 27392535 AluSc 308 + 5 285 55051 131 15 15 134 chain 3341 chr13 114364328 + 27400520 27400564 LTR12F 595 + 239 282 96678 27 1 0 16 chain 5930 chr13 114364328 + 27431296 27431370 L1PB2 3958 + 3712 3785 81358 63 1 0 10 chain 6498 chr13 114364328 + 27470398 27470617 L1MC1 2226 + 1996 2191 79357 51 23 16 13 92 76 32 1 0 7 chain 9114 chr13 114364328 + 27488268 27488383 L1MA5A 2387 + 2043 2157 72316 64 1 0 50 chain 41078 chr13 114364328 + 27513557 27514022 L1PA5 6144 + 5673 6138 33916 465 chain 23395 chr13 114364328 + 27582627 27582900 L1PA7 6471 + 6196 6468 51767 212 1 0 60 chain 10853 chr13 114364328 + 27672196 27672325 MLT1B 390 + 245 374 68770 129 chain 16041 chr13 114364328 + 27672909 27673242 L1PB1 5432 + 5114 5415 60972 23 1 0 10 1 0 9 6 2 9 2 0 53 2 1 15 1 0 45 1 0 11 29 16 19 16 13 6 2 0 24 1 0 21 1 0 13 1 0 11 chain 10779 chr13 114364328 + 27738946 27739144 L1MA5A 2387 + 2143 2303 68900 14 2 0 58 7 0 17 28 0 63 1 0 8 chain 21213 chr13 114364328 + 27743909 27744310 MSTA 426 + 7 404 54864 101 47 39 6 0 6 42 27 28 7 2 0 10 11 11 44 9 8 95 chain 44881 chr13 114364328 + 27754528 27755061 LTR10A 586 + 12 574 31650 167 0 29 366 chain 7929 chr13 114364328 + 27809126 27809272 LTR8 732 + 477 625 75045 54 10 11 22 21 22 39 chain 9187 chr13 114364328 + 27828762 27828869 U6 107 + 0 107 72144 107 chain 81239 chr13 114364328 + 27849195 27850273 L1PB2 3958 + 2769 3838 21380 155 2 0 383 2 0 56 1 0 11 4 0 65 2 0 12 2 0 89 6 5 62 15 14 60 1 0 94 1 0 36 0 8 19 chain 95317 chr13 114364328 + 27936622 27937740 L1PA6 6164 + 5043 6161 18865 49 1 2 916 1 0 151 chain 4598 chr13 114364328 + 27940220 27940388 MER30 238 + 175 238 87802 15 105 0 48 chain 3179 chr13 114364328 + 28054328 28054364 MER57E1 380 + 0 36 98117 36 chain 11278 chr13 114364328 + 28069603 28069831 MER2 342 + 17 221 68117 49 13 14 35 9 5 43 29 10 34 2 0 14 chain 7400 chr13 114364328 + 28122527 28122625 L1MB2 1706 + 1598 1694 76392 13 1 0 10 1 0 73 chain 5764 chr13 114364328 + 28202833 28202908 MADE1 96 + 0 93 82068 30 0 1 15 0 17 30 chain 16694 chr13 114364328 + 28320439 28320661 MER30 238 + 6 238 60158 97 7 20 67 3 0 48 chain 32700 chr13 114364328 + 28391272 28391704 MER4A1 472 + 8 458 39764 218 1 22 97 10 7 106 chain 4924 chr13 114364328 + 28507744 28507808 MLT1B 390 + 14 77 86027 12 1 0 51 chain 35991 chr13 114364328 + 28516241 28517179 L1PB1 5432 + 4824 5422 37420 102 0 1 171 6 7 10 3 0 23 1 0 5 2 1 14 16 10 52 2 1 10 6 5 45 350 27 24 6 5 9 2 0 24 1 0 22 1 0 12 1 0 18 chain 7103 chr13 114364328 + 28543185 28543283 MER20 218 + 89 184 77255 68 2 0 6 1 0 21 chain 3940 chr13 114364328 + 28678956 28679038 MER20 218 + 39 122 91830 27 24 25 31 chain 27879 chr13 114364328 + 28698252 28698680 LTR12F 595 + 0 595 45063 89 49 150 47 0 64 42 2 0 125 3 7 71 chain 74184 chr13 114364328 + 28706736 28707565 L1PA5 6144 + 5320 6141 23038 674 7 0 37 1 0 110 chain 5005 chr13 114364328 + 28715579 28715635 L1MA5A 2387 + 2236 2292 85640 56 chain 22844 chr13 114364328 + 28812609 28812889 AluSp 311 + 11 295 52596 13 1 0 60 0 4 27 0 2 136 1 0 42 chain 79616 chr13 114364328 + 28896215 28897100 L1PA4 6152 + 4303 5188 21715 885 chain 121182 chr13 114364328 + 28906790 28909864 L1PA4 6152 + 1524 4324 15320 1071 1630 1355 90 2 3 281 chain 3339 chr13 114364328 + 28937201 28937310 LTR12F 595 + 139 248 96698 28 24 48 20 25 1 12 chain 48600 chr13 114364328 + 28990355 28991032 LTR12 884 + 0 751 30088 24 1 0 15 4 5 53 20 61 7 0 4 150 0 25 32 3 1 134 0 5 161 4 5 69 chain 39749 chr13 114364328 + 29046651 29047133 LTR10D 510 + 0 497 34855 75 6 12 115 0 8 21 1 0 38 0 2 226 chain 12470 chr13 114364328 + 29126551 29126742 MER30 238 + 31 238 66030 76 4 0 11 3 16 18 0 6 60 5 6 14 chain 171059 chr13 114364328 + 29193380 29195253 L1PA3long 6157 + 4278 6157 11047 79 0 4 1623 0 2 171 chain 110557 chr13 114364328 + 29246708 29248378 L1PB1 5432 + 3768 5422 17003 26 0 3 5 3 0 84 1 0 69 8 1 413 0 5 76 1 2 23 0 3 139 0 1 9 0 3 203 1 2 195 7 0 7 1 8 48 12 15 6 3 0 24 1 0 6 1 0 13 6 2 9 2 0 52 2 1 14 5 4 36 6 5 16 1 0 15 9 0 12 30 25 14 9 8 23 5 10 19 chain 7979 chr13 114364328 + 29260434 29260559 MER85 139 + 4 139 74927 92 16 26 17 chain 3491 chr13 114364328 + 29285328 29285384 L1MC5 759 + 311 366 95310 11 8 7 37 chain 338584 chr13 114364328 + 29303133 29309009 L1PA11 4918 + 8 4578 6098 7 1 0 27 2 0 36 4 1 36 0 2 8 8 6 49 1 0 35 7 4 55 0 5 69 10 12 17 0 10 344 3 4 373 14 12 165 0 1 60 2 1 7 1 0 63 1 4 376 9 6 10 0 1 113 0 1 267 2 1 51 25 23 40 0 2 63 0 1 466 1 2 88 1 0 647 1295 0 43 0 1 34 0 27 327 1 2 170 0 3 139 0 3 65 2 1 13 2 0 65 130 82 13 2 0 11 chain 75102 chr13 114364328 + 29334748 29335714 MER11C 1089 + 0 1074 22817 55 0 91 167 1 5 43 0 5 174 60 59 170 5 13 211 0 1 80 chain 2902 chr13 114364328 + 29375354 29375385 MADE1 96 + 51 82 100830 31 chain 2902 chr13 114364328 + 29375412 29375443 MADE1 96 + 51 82 100829 31 chain 3773 chr13 114364328 + 29375470 29375514 MADE1 96 + 51 95 93041 44 chain 5765 chr13 114364328 + 29375657 29375798 L1PB3 3668 + 3485 3620 82058 10 1 0 6 0 4 23 5 3 23 19 16 12 1 0 13 3 1 18 1 0 6 chain 108106 chr13 114364328 + 29413316 29414466 L1HS 6032 + 4880 6030 17307 1150 chain 3117 chr13 114364328 + 29424170 29424205 L1MA4 2864 + 2766 2801 98641 35 chain 36760 chr13 114364328 + 29552425 29552912 MER9a3 513 + 0 513 36916 18 0 2 87 3 4 147 0 18 129 11 13 15 1 2 57 0 2 19 chain 7815 chr13 114364328 + 29562374 29562589 Tigger4a 237 + 25 235 75329 4 1 0 12 7 0 20 0 2 32 44 42 24 4 6 12 19 20 36 chain 292105 chr13 114364328 + 29615477 29619655 L1PB1 5432 + 1228 5422 7068 150 35 41 350 0 1 285 0 12 24 6 0 6 0 6 9 2 6 127 1 0 86 11 18 69 0 3 77 7 0 315 6 5 10 27 28 73 0 4 271 1 3 425 1 0 87 6 8 470 3 1 106 0 1 72 1 3 158 4 7 14 5 6 63 3 0 214 10 11 161 0 2 82 0 8 32 10 9 11 20 14 48 21 19 42 1 0 15 2 1 5 2 0 9 8 0 11 30 25 20 13 12 15 1 0 10 1 0 18 chain 272872 chr13 114364328 + 29625545 29629552 L1PA10 4194 + 250 4161 7636 16 7 5 13 1 0 8 48 22 21 2 0 19 30 28 13 7 0 88 3 1 126 10 14 75 170 166 83 4 0 6 5 9 175 8 9 308 12 13 689 0 1 470 7 8 12 3 2 11 3 14 191 1 0 249 4 1 203 0 7 218 5 7 76 72 0 324 0 1 4 1 0 57 0 4 65 1 0 34 4 1 33 1 0 11 chain 53493 chr13 114364328 + 29662192 29662943 MER4E 760 + 0 760 28399 17 5 0 134 56 59 28 0 1 18 0 7 105 1 3 76 1 0 136 0 1 24 0 1 4 1 0 34 0 1 111 chain 373605 chr13 114364328 + 29666228 29671296 L1PA3long 6157 + 673 5719 5595 34 42 49 12 81 77 120 331 298 302 1 3 154 2 0 132 0 1 115 6 7 212 0 2 122 8 6 8 1 0 229 0 1 369 6 7 52 0 2 184 1 0 235 0 1 279 22 21 1603 0 4 405 chain 135734 chr13 114364328 + 29671754 29673410 L1PA7 6471 + 4798 6469 13464 85 3 1 69 1 0 506 0 1 158 1 0 85 0 1 268 5 6 203 1 2 15 0 8 99 8 0 8 0 8 55 0 5 75 0 2 11 chain 6657 chr13 114364328 + 29739751 29739884 MLT1C 463 + 39 168 78785 8 0 1 39 20 21 13 10 4 43 chain 3634 chr13 114364328 + 29757484 29757525 MSTA 426 + 385 426 94143 41 chain 3997 chr13 114364328 + 30001129 30001177 MSTC 436 + 384 432 91469 48 chain 2917 chr13 114364328 + 30013864 30013897 MER53 195 - 34 67 100691 33 chain 27126 chr13 114364328 + 30016780 30017162 Tigger2 2703 + 2272 2664 46088 33 2 0 5 11 14 53 1 10 277 chain 26279 chr13 114364328 + 30031052 30031342 L1PA2 6032 + 5737 6028 47305 137 0 1 153 chain 39943 chr13 114364328 + 30054498 30055064 LTR12 884 + 0 650 34705 25 1 0 52 11 81 30 4 5 147 1 2 35 2 0 67 2 1 99 0 13 77 0 3 13 chain 29582 chr13 114364328 + 30095027 30095401 THE1C 375 + 0 375 42503 182 2 3 107 1 2 56 1 0 25 chain 38837 chr13 114364328 + 30139219 30139724 L1PA8 5853 + 5347 5853 35480 143 0 7 56 0 1 10 1 0 45 2 0 69 2 1 9 1 0 49 11 10 16 1 0 90 chain 256337 chr13 114364328 + 30213114 30215935 L1PA3long 6157 + 3335 6157 8078 1029 0 2 1030 1 0 761 chain 4038 chr13 114364328 + 30215946 30216017 MLT1B 390 + 316 388 91161 32 10 11 29 chain 24363 chr13 114364328 + 30223174 30223467 AluY 311 + 17 308 50228 96 3 0 13 0 1 181 chain 189292 chr13 114364328 + 30244583 30246851 L1PA7 6471 + 3489 5770 10152 87 0 3 257 1 0 88 4 0 242 0 1 458 1 0 41 0 8 176 0 1 66 1 2 36 1 0 29 0 1 61 1 0 47 0 3 235 5 6 90 0 1 150 3 0 21 0 4 18 3 0 79 1 4 66 chain 541324 chr13 114364328 + 30259360 30265382 L1PA3long 6157 + 0 6156 1250 151 1 2 554 0 1 68 0 128 142 1 0 107 9 12 373 0 1 362 0 1 305 0 2 313 1 0 1837 6 1 928 0 4 864 chain 158499 chr13 114364328 + 30269053 30270918 SVA_D 2077 + 8 2069 11839 20 2 0 364 0 11 207 3 80 206 14 18 8 0 1 19 0 144 125 49 0 2 1 0 127 0 1 52 9 8 37 0 1 290 0 10 330 chain 2876 chr13 114364328 + 30270021 30270070 SVA_D 2077 + 1033 1084 42063 3 0 2 46 chain 8698 chr13 114364328 + 30377180 30377287 MER5A 189 + 0 116 73219 35 0 9 72 chain 27183 chr13 114364328 + 30387098 30387416 AluYb8 318 + 0 306 45993 132 3 0 163 9 0 11 chain 31857 chr13 114364328 + 30523977 30524348 L1PA7 6471 + 6099 6470 40452 371 chain 26807 chr13 114364328 + 30548095 30548436 THE1C 375 + 7 350 46525 74 1 2 97 6 7 163 chain 22620 chr13 114364328 + 30556432 30556827 L1MA5A 2387 + 1917 2291 52956 23 1 2 89 1 2 10 2 0 26 1 0 10 18 19 9 1 0 47 3 1 26 1 0 32 7 4 15 14 0 59 chain 20380 chr13 114364328 + 30583563 30583839 AluSc 308 + 10 293 55910 47 5 0 177 16 28 31 chain 6068 chr13 114364328 + 30600713 30600793 Tigger4a 237 + 128 209 80839 16 1 0 35 0 2 28 chain 28160 chr13 114364328 + 30600906 30601357 LTR7B 505 + 0 495 44614 105 1 11 59 0 38 12 34 27 26 0 2 40 1 2 40 1 0 24 0 1 54 14 13 25 0 1 15 chain 29313 chr13 114364328 + 30601463 30601774 AluYa5 310 + 0 310 42869 132 1 0 178 chain 4123 chr13 114364328 + 30611783 30611833 MER21C 908 + 518 568 90632 50 chain 4573 chr13 114364328 + 30624269 30624323 MER65A 464 + 0 54 87954 54 chain 3252 chr13 114364328 + 30728410 30728447 MLT2F 649 + 560 597 97461 37 chain 8840 chr13 114364328 + 30780698 30780870 MSTB2-int 240 + 40 206 72891 5 1 0 8 0 19 13 15 0 26 6 5 33 7 0 29 1 0 28 chain 3757 chr13 114364328 + 30782474 30782514 MSTB2 466 + 426 466 93159 40 chain 5394 chr13 114364328 + 30834736 30834873 MER53 195 + 45 184 83726 21 44 45 18 7 8 47 chain 10197 chr13 114364328 + 30876588 30876713 MER85 139 + 4 139 70017 94 0 10 31 chain 10882 chr13 114364328 + 30978166 30978282 AluYb8 318 + 199 315 68724 116 chain 3040 chr13 114364328 + 31063307 31063392 MIR 256 + 32 127 99413 24 39 49 22 chain 18976 chr13 114364328 + 31072861 31073199 MSTA 426 + 1 408 57574 107 29 55 43 2 0 6 9 14 10 2 0 9 6 12 39 7 43 69 chain 21325 chr13 114364328 + 31088602 31088840 AluYa5 310 + 48 310 54728 49 1 0 95 0 25 93 chain 32602 chr13 114364328 + 31098121 31098555 MER41A 554 + 0 441 39860 87 5 6 108 16 22 218 chain 23288 chr13 114364328 + 31128102 31128469 THE1B 368 + 0 368 51946 169 1 0 32 26 30 11 1 0 64 7 6 30 3 0 5 4 7 14 chain 3071 chr13 114364328 + 31170918 31170973 MER51A 677 + 332 388 99095 22 9 10 24 chain 52526 chr13 114364328 + 31177773 31178575 LTR12_ 688 + 0 688 28722 123 25 0 15 5 6 336 100 0 70 0 10 128 chain 7273 chr13 114364328 + 31191872 31192059 MER51A 677 + 315 417 76756 27 0 3 19 88 0 53 chain 25516 chr13 114364328 + 31194606 31194873 AluYa5 310 + 38 305 48460 267 chain 463754 chr13 114364328 + 31250526 31256879 L1PA7 6471 + 614 6417 4029 138 1 0 29 0 1 208 7 6 208 7 8 128 16 15 586 0 1 93 1 0 24 0 1 128 1 0 405 0 3 35 1 0 140 0 2 80 0 4 540 319 0 85 5 4 11 2 0 237 1 9 265 3 0 52 1 6 125 0 13 98 0 1 254 299 0 13 0 5 54 0 1 38 0 4 305 16 16 114 1 0 83 3 7 99 12 17 304 5 12 40 0 5 19 0 1 16 1 0 87 0 4 121 0 6 489 chain 567848 chr13 114364328 + 31302314 31308345 L1HS 6032 + 1 6032 19 6031 chain 516627 chr13 114364328 + 31340591 31346509 L1PA4 6152 + 0 6143 2440 127 0 14 11 26 12 43 1 6 718 0 1 13 3 4 694 0 149 454 0 2 138 0 4 457 0 3 130 0 1 678 1 0 295 0 4 677 1 0 120 0 55 378 0 2 953 chain 33245 chr13 114364328 + 31347210 31347616 MER48 407 + 0 407 39305 261 0 1 145 chain 5197 chr13 114364328 + 31402186 31402252 LTR37A 408 + 79 145 84689 66 chain 115614 chr13 114364328 + 31404466 31406404 MER57-int 2662 + 842 2500 16300 21 6 14 204 354 55 233 11 13 54 1 0 7 1 2 384 0 7 74 3 0 418 2 1 4 2 0 63 6 1 24 7 21 53 1 0 5 chain 80935 chr13 114364328 + 31457907 31458905 L1PA7 6471 + 5460 6459 21448 161 0 3 609 0 4 94 0 1 27 16 9 91 chain 4632 chr13 114364328 + 31473609 31473666 MER57A1 433 + 376 433 87634 57 chain 48634 chr13 114364328 + 31496282 31496859 L1PA7 6471 + 5890 6467 30075 577 chain 48994 chr13 114364328 + 31529760 31530390 L1PA8 5853 + 5227 5853 29955 309 0 1 27 1 0 45 2 0 68 1 0 19 1 0 44 2 1 19 1 0 35 8 10 48 chain 37672 chr13 114364328 + 31577406 31577867 LTR2 463 + 0 463 36286 25 0 1 333 15 16 88 chain 26787 chr13 114364328 + 31623765 31624164 LTR7 482 + 0 470 46560 67 6 39 7 0 5 106 12 0 7 17 61 15 0 1 162 chain 43607 chr13 114364328 + 31643748 31644243 MER9a2 513 + 0 494 32378 39 1 0 455 chain 14913 chr13 114364328 + 31674806 31674965 L1PA4 6152 + 5826 5985 62372 159 chain 13991 chr13 114364328 + 31674965 31675119 L1PA4 6152 + 5997 6151 63608 154 chain 127525 chr13 114364328 + 31676838 31678422 L1PA7 6471 + 4876 6461 14350 77 1 0 24 3 2 7 0 1 154 3 4 338 0 1 137 1 0 74 0 2 5 5 3 570 14 12 67 0 2 82 0 1 22 chain 4374 chr13 114364328 + 31687693 31687750 MER2 342 + 20 77 89030 57 chain 314893 chr13 114364328 + 31687959 31692493 L1P3 4156 + 27 4139 6511 130 0 1 84 6 20 58 3 2 81 31 0 261 36 39 115 1 15 89 16 0 424 4 5 49 53 16 370 61 0 240 1 0 119 309 0 178 0 1 232 0 1 72 6 0 600 13 17 744 0 1 15 1 4 97 2 0 7 2 1 24 chain 3109 chr13 114364328 + 31689792 31689829 L1P3 4156 + 1746 1783 98704 37 chain 69630 chr13 114364328 + 31724191 31725062 L1PA8 5853 + 4987 5853 24089 12 1 0 7 6 7 354 0 1 196 1 0 44 2 0 52 0 1 18 1 0 9 1 0 52 2 1 19 1 0 93 chain 3398 chr13 114364328 + 31747695 31747737 MADE1 96 + 48 90 96085 42 chain 35427 chr13 114364328 + 31823552 31824007 MER41A 554 + 89 554 37765 78 0 1 136 1 0 148 0 10 92 chain 53110 chr13 114364328 + 31863506 31864127 L1PA6 6164 + 5426 6045 28537 576 3 1 42 chain 35508 chr13 114364328 + 31974518 31975074 HSMAR2 1300 + 11 616 37719 28 1 0 22 10 70 67 0 1 82 5 5 6 1 0 45 32 32 34 2 0 86 9 0 53 0 1 73 chain 24529 chr13 114364328 + 31983227 31983581 THE1A 353 + 0 353 49979 15 2 0 32 0 1 35 12 11 139 8 9 111 chain 123873 chr13 114364328 + 31983581 31985450 THE1A-int 1579 + 0 1574 14868 281 2 0 5 6 8 62 0 1 141 316 8 48 0 2 488 0 10 520 chain 24901 chr13 114364328 + 31985455 31985808 THE1A 353 + 0 351 49428 15 2 0 32 0 1 33 14 13 17 0 2 6 8 6 226 chain 144627 chr13 114364328 + 31999470 32001138 SVA_D 2077 + 0 2077 12718 7 1 0 17 2 1 14 0 27 420 0 76 88 3 0 188 0 223 127 39 0 42 0 78 44 0 49 676 chain 3312 chr13 114364328 + 32000337 32000376 SVA_D 2077 + 839 878 45875 39 chain 55068 chr13 114364328 + 32122465 32123272 L1PB 1623 + 818 1585 27845 489 4 0 139 1 0 7 2 1 30 1 0 5 3 0 12 5 1 14 61 37 22 2 0 10 chain 22920 chr13 114364328 + 32156329 32156621 AluSp 311 + 4 302 52483 46 5 11 241 chain 13669 chr13 114364328 + 32214334 32214543 MER30 238 + 0 235 64056 104 21 26 22 1 5 11 0 17 50 chain 20306 chr13 114364328 + 32248298 32248541 L1PA7 6471 + 6226 6469 56011 243 chain 18286 chr13 114364328 + 32327446 32327687 AluY 311 + 57 297 58378 65 3 5 110 4 1 59 chain 5179 chr13 114364328 + 32328729 32328791 MER53 195 + 122 184 84775 62 chain 24081 chr13 114364328 + 32341624 32341882 AluYa5 310 + 40 296 50678 83 2 0 173 chain 47965 chr13 114364328 + 32350858 32351532 LTR12_ 688 + 0 688 30309 138 18 26 92 8 9 78 5 6 80 0 3 5 4 1 172 3 7 71 chain 80678 chr13 114364328 + 32387149 32388107 LTR13A 966 + 0 966 21495 143 5 11 328 1 0 329 0 1 16 1 0 97 0 3 38 chain 10733 chr13 114364328 + 32388482 32388666 MER47A 366 + 114 296 68981 53 22 19 69 12 13 28 chain 28477 chr13 114364328 + 32417215 32417571 THE1C 375 + 2 365 44162 137 1 5 78 0 4 124 1 0 15 chain 116777 chr13 114364328 + 32417599 32419099 THE1C-int 1605 + 27 1603 16089 66 7 64 78 1 7 36 0 4 45 0 6 27 0 1 12 4 0 72 0 7 303 6 2 540 11 14 231 1 0 4 0 1 56 chain 4683 chr13 114364328 + 32419099 32419154 THE1C 375 + 18 75 87365 48 0 2 7 chain 4902 chr13 114364328 + 32419165 32419223 THE1C 375 + 84 142 86143 58 chain 2300 chr13 114364328 + 32419571 32419601 THE1C 375 + 154 186 104733 18 0 2 12 chain 13551 chr13 114364328 + 32419605 32419768 THE1C 375 + 190 350 64250 71 3 0 89 chain 24437 chr13 114364328 + 32520372 32520687 AluY 311 + 0 304 50118 50 4 0 244 7 0 10 chain 10455 chr13 114364328 + 32523717 32523932 L1PB1 5432 + 5208 5404 69510 12 2 1 15 1 0 41 30 20 30 8 5 14 2 0 24 1 0 21 1 0 13 chain 12450 chr13 114364328 + 32547673 32549136 L1MB2 1706 + 810 1689 66069 68 14 0 8 1094 512 47 13 17 27 17 40 39 81 67 18 6 5 31 chain 38425 chr13 114364328 + 32560815 32561295 MER41B 635 + 154 635 35774 202 0 1 19 1 0 5 0 1 86 1 0 43 0 1 123 chain 114162 chr13 114364328 + 32575302 32576592 L1PA5 6144 + 4856 6142 16533 1279 4 0 7 chain 122748 chr13 114364328 + 32577203 32578758 THE1C-int 1605 + 17 1599 15069 117 0 1 37 1 0 73 1 8 192 0 7 269 0 16 21 6 0 546 0 1 271 0 2 21 chain 22231 chr13 114364328 + 32620381 32620675 AluY 311 + 6 301 53506 84 5 8 32 1 2 38 11 8 123 chain 9215 chr13 114364328 + 32630322 32630536 MER20 218 + 22 218 72092 62 28 17 51 50 43 23 chain 177078 chr13 114364328 + 32715624 32717705 SVA_D 2077 + 0 2077 10723 432 1 0 134 2 1 195 40 0 154 1 38 33 0 51 48 1 0 133 49 0 169 0 1 4 9 8 676 chain 1145 chr13 114364328 + 32716388 32716424 SVA_D 2077 + 725 761 79484 36 chain 4047 chr13 114364328 + 32716798 32716847 SVA_D 2077 + 1346 1444 40503 6 0 49 43 chain 12158 chr13 114364328 + 32826500 32826650 LTR8 732 + 582 732 66553 150 chain 4597 chr13 114364328 + 32864653 32864733 Tigger9a 622 + 114 195 87805 22 14 15 44 chain 31403 chr13 114364328 + 32865708 32866134 MLT2A1 477 + 0 477 40811 117 0 1 24 0 1 19 7 11 143 0 1 54 0 4 10 1 37 45 0 4 6 chain 4037 chr13 114364328 + 32879231 32879281 LTR16C 481 + 413 463 91173 50 chain 85122 chr13 114364328 + 32963209 32964155 L1PA3long 6157 + 5199 6145 20599 946 chain 9081 chr13 114364328 + 32972802 32972934 MER30 238 + 88 238 72377 16 7 25 109 chain 23138 chr13 114364328 + 33011196 33011632 L1MA8 2339 + 1329 1766 52162 47 0 13 25 2 1 53 1 0 63 8 11 69 87 75 52 1 0 28 chain 7792 chr13 114364328 + 33143030 33143168 MLT1A 405 + 220 360 75389 32 33 36 46 1 0 26 chain 59612 chr13 114364328 + 33215789 33216685 L1PB1 5432 + 4544 5404 26481 82 2 0 115 0 1 8 2 0 63 1 0 290 1 2 12 3 0 29 1 0 12 5 1 8 2 0 53 18 16 44 1 0 16 3 0 6 16 6 15 35 30 17 1 0 20 2 1 13 chain 32335 chr13 114364328 + 33293542 33293990 MLT2A1 477 + 0 477 40088 119 0 1 49 4 1 28 5 0 182 18 54 43 chain 14635 chr13 114364328 + 33298998 33299221 Tigger3a 397 + 48 333 62761 27 19 68 143 1 14 33 chain 13685 chr13 114364328 + 33305871 33306043 L1PA10 4194 + 3981 4150 64031 135 3 0 34 chain 13985 chr13 114364328 + 33347561 33347732 Tigger3a 397 + 152 323 63621 171 chain 141524 chr13 114364328 + 33357797 33359528 LTR12C 1709 + 0 1709 12982 773 34 17 46 2 1 274 1 0 5 3 1 107 0 4 108 0 1 62 10 0 10 7 11 289 chain 518602 chr13 114364328 + 33417969 33424095 L1PA6 6164 + 1 6156 2335 466 1 0 978 3 1 81 0 12 303 0 1 280 7 9 201 0 1 89 1 2 551 0 1 57 0 1 135 0 2 12 0 1 24 0 6 85 1 0 267 0 1 898 0 3 180 2 1 533 4 6 967 chain 8995 chr13 114364328 + 33428662 33428866 L1MA1 4479 + 4014 4190 72565 6 0 1 16 0 1 32 0 1 7 1 0 27 2 0 31 65 37 17 chain 37894 chr13 114364328 + 33437008 33437472 LTR2 463 + 0 463 36144 263 2 0 99 12 13 88 chain 6367 chr13 114364328 + 33456029 33456108 MER58B 340 + 155 234 79788 79 chain 45239 chr13 114364328 + 33492349 33492901 MER41A 554 + 0 554 31456 472 0 2 80 chain 76909 chr13 114364328 + 33503793 33504716 L1PA6 6164 + 5194 6116 22343 121 1 0 701 1 2 4 1 0 94 chain 4008 chr13 114364328 + 33504717 33504761 L1PA6 6164 + 6116 6160 91388 44 chain 4656 chr13 114364328 + 33513089 33513150 MER58B 340 + 271 335 87500 12 0 1 40 0 2 9 chain 3895 chr13 114364328 + 33516702 33516746 MER33 330 + 54 98 92172 44 chain 5542 chr13 114364328 + 33559920 33559990 MLT1A 405 + 252 322 83066 70 chain 25553 chr13 114364328 + 33572182 33572498 MER57B1 401 + 1 318 48397 42 2 1 41 0 2 231 chain 24607 chr13 114364328 + 33584754 33585091 MSTA 426 + 82 426 49857 112 8 12 29 6 16 116 7 0 59 chain 67342 chr13 114364328 + 33590091 33590854 L1PA5 6144 + 5376 6132 24611 614 7 0 142 chain 49701 chr13 114364328 + 33671901 33672530 L1PA8 5853 + 5228 5853 29686 264 0 2 61 8 7 48 2 0 68 2 1 9 3 2 8 1 2 40 2 1 19 1 0 93 chain 28688 chr13 114364328 + 33684875 33685457 MER51B 395 + 0 395 43821 39 13 0 112 32 0 14 160 18 62 1 0 5 0 1 144 chain 19606 chr13 114364328 + 33719045 33719425 THE1D 372 + 0 372 56901 76 47 29 61 0 6 6 50 48 12 2 8 126 chain 40155 chr13 114364328 + 33736633 33737140 LTR12F 595 + 11 595 34555 89 0 85 25 16 7 178 0 1 199 chain 6033 chr13 114364328 + 33765842 33765914 MER4B 649 + 500 572 80948 72 chain 27188 chr13 114364328 + 33774596 33774888 AluYa5 310 + 0 293 45988 73 0 1 219 chain 19323 chr13 114364328 + 33790164 33790518 L1PB2 3958 + 3470 3838 57214 40 53 58 50 1 0 15 1 15 33 2 1 67 6 4 21 2 1 63 chain 544247 chr13 114364328 + 33984678 33990692 L1PA3long 6157 + 4 6156 1071 149 0 1 328 0 8 277 10 138 3172 3 2 1056 0 1 780 1 2 238 chain 102767 chr13 114364328 + 34087475 34088918 THE1D-int 1627 + 63 1621 17979 274 9 111 112 0 8 140 5 0 8 3 9 18 16 17 14 5 1 260 0 9 111 60 57 343 0 1 65 chain 12819 chr13 114364328 + 34088923 34089239 THE1D 372 + 0 372 65418 56 136 190 45 0 2 79 chain 38720 chr13 114364328 + 34123066 34123539 LTR2 463 + 0 463 35550 215 27 17 231 chain 3228 chr13 114364328 + 34129021 34129059 MER58C 217 + 146 184 97689 38 chain 67103 chr13 114364328 + 34181404 34182138 SVA_D 2077 + 1206 2075 24682 160 0 135 574 chain 75931 chr13 114364328 + 34190920 34191877 L1PA7 6471 + 5512 6467 22600 65 1 2 42 1 0 82 0 1 67 6 8 178 1 0 305 2 1 192 3 0 12 chain 91801 chr13 114364328 + 34284283 34285894 L1PB1 5432 + 4004 5423 19370 139 0 1 178 0 2 292 1 4 8 0 1 13 23 0 155 25 19 110 0 2 153 159 22 11 1 0 24 1 0 4 34 27 48 3 5 15 7 6 32 6 5 16 1 0 5 27 10 15 25 20 23 5 4 19 1 0 26 1 0 5 chain 13466 chr13 114364328 + 34338458 34338724 L1PB1 5432 + 5168 5423 64363 44 1 0 8 20 18 43 1 0 15 15 16 14 10 7 13 2 0 24 1 0 21 1 0 13 1 0 19 chain 16833 chr13 114364328 + 34352190 34352391 MER107 203 + 0 203 59999 134 0 1 10 0 1 57 chain 126030 chr13 114364328 + 34366893 34368312 L1PA5 6144 + 4716 6140 14549 578 0 1 301 0 2 181 0 2 359 chain 80572 chr13 114364328 + 34387390 34388287 L1P1 4361 + 2779 3681 21519 14 0 5 883 chain 408200 chr13 114364328 + 34494370 34499106 L1PA5 6144 + 1396 6144 5043 751 0 1 162 1 0 206 1 3 14 0 1 424 2 4 436 1 0 215 1 4 58 1 0 280 5 6 608 0 2 726 0 4 831 2 1 11 chain 122180 chr13 114364328 + 34528893 34530445 THE1A-int 1579 + 7 1579 15166 162 2 1 5 0 1 78 12 11 237 1 0 372 4 5 333 5 16 8 0 2 22 1 0 263 0 9 47 chain 27497 chr13 114364328 + 34530447 34530799 THE1A 353 + 2 353 45587 100 9 8 243 chain 140610 chr13 114364328 + 34539871 34541713 SVA_F 1814 + 10 1548 13052 424 0 1 464 276 0 49 52 18 161 1 0 50 1 0 10 2 0 160 0 9 192 chain 1442 chr13 114364328 + 34540759 34540794 SVA_F 1814 + 1139 1174 68374 35 chain 2377 chr13 114364328 + 34540795 34540825 SVA_F 1814 + 936 980 60698 11 1 15 18 chain 11546 chr13 114364328 + 34540825 34541002 SVA_F 1814 + 916 1107 45284 32 5 20 33 1 0 106 chain 2283 chr13 114364328 + 34541101 34541136 SVA_F 1814 + 1107 1142 45284 35 chain 177367 chr13 114364328 + 34563611 34566092 L1PB1 5432 + 2967 5417 10708 511 0 2 86 5 3 49 0 6 108 2 0 84 5 6 112 1 0 286 2 3 81 2 0 147 2 1 162 9 7 80 0 1 102 9 23 217 14 15 40 83 59 9 2 0 50 9 8 12 1 0 37 7 6 16 71 57 17 1 0 21 1 0 13 1 0 9 1 0 4 chain 2739 chr13 114364328 + 34605713 34605752 MER39 703 + 544 579 102049 19 4 0 16 chain 35764 chr13 114364328 + 34609766 34610403 L1PB1 5432 + 4847 5427 37555 249 46 21 21 37 30 51 1 0 17 1 0 45 1 0 15 24 12 19 25 20 23 1 0 21 1 0 13 1 0 14 1 0 5 1 0 4 chain 121869 chr13 114364328 + 34651301 34652939 THE1B-int 1605 + 1 1595 15207 281 0 15 132 38 21 198 54 1 98 0 9 183 0 2 654 chain 29339 chr13 114364328 + 34669749 34670137 MLT2A1 477 + 0 382 42824 147 6 3 18 5 2 34 6 6 172 chain 29462 chr13 114364328 + 34675022 34675445 MER57A1 433 + 1 424 42655 243 20 0 15 3 26 5 2 0 86 1 0 48 chain 56950 chr13 114364328 + 34688100 34688722 L1PA3long 6157 + 5520 6142 27287 622 chain 10439 chr13 114364328 + 34700014 34700141 MER34C2 569 + 417 543 69538 21 1 0 105 chain 50165 chr13 114364328 + 34753274 34753946 LTR12_ 688 + 0 688 29501 31 4 5 61 2 18 249 0 1 107 1 0 42 3 2 101 0 1 4 1 0 66 chain 30331 chr13 114364328 + 34765961 34766397 MER1A 529 + 43 486 41728 37 17 17 41 0 3 192 5 4 54 0 3 57 12 14 21 chain 9512 chr13 114364328 + 34799253 34799358 LTR7Y 441 + 334 441 71444 10 0 2 95 chain 246015 chr13 114364328 + 34799358 34802335 HERVH-int 3825 + 0 3482 8329 199 5 237 53 2 0 11 21 20 12 5 0 35 5 4 9 1 0 24 29 0 14 1 0 13 12 9 17 0 61 37 0 1 7 0 2 13 0 3 671 0 2 231 4 31 299 0 10 1095 4 214 148 chain 34132 chr13 114364328 + 34802930 34803348 LTR7Y 441 + 0 403 38611 165 31 0 88 0 16 134 chain 35302 chr13 114364328 + 34859612 34860035 L1PA8A 6298 + 5873 6291 37825 215 5 0 203 chain 90189 chr13 114364328 + 34975175 34976529 L1PB1 5432 + 4027 5392 19651 131 6 10 137 6 34 169 12 14 83 0 4 20 0 1 120 0 1 44 0 1 127 1 0 168 25 23 24 1 0 8 1 0 11 22 16 35 13 13 16 1 0 45 1 0 14 1 0 4 21 11 12 7 5 4 1 0 12 2 0 26 1 0 22 chain 258847 chr13 114364328 + 35083360 35086285 L1PA4 6152 + 1737 4695 7999 179 0 1 259 0 32 148 0 1 425 6 0 1158 0 1 415 0 4 335 chain 128818 chr13 114364328 + 35088674 35090061 L1PA2 6032 + 4633 6020 14176 1387 chain 43938 chr13 114364328 + 35122227 35122717 L1PA5 6144 + 5641 6131 32168 490 chain 3330 chr13 114364328 + 35132616 35132702 L1MB8 1703 + 1475 1563 96755 5 1 0 24 29 30 21 0 2 6 chain 403546 chr13 114364328 + 35270423 35275539 L1P2 5180 + 65 5178 5109 85 1 0 3 5 0 8 0 5 28 1 0 50 16 15 51 9 10 126 19 0 69 1 0 48 6 5 50 2 1 167 1 16 378 0 3 645 0 1 537 1 0 68 0 3 112 0 1 483 7 0 109 2 1 46 2 0 333 1 0 175 0 2 17 0 1 11 6 5 570 0 1 43 5 13 281 2 1 164 5 0 11 0 5 110 0 4 81 1 0 73 1 0 46 1 0 38 1 0 4 chain 12120 chr13 114364328 + 35275864 35276011 L1PA6 6164 + 6018 6162 66629 138 3 0 6 chain 3803 chr13 114364328 + 35284093 35284215 MER58B 340 + 215 339 92826 14 61 63 47 chain 48072 chr13 114364328 + 35323183 35323724 L1PA3long 6157 + 5616 6156 30269 208 1 0 190 0 1 137 1 0 4 chain 120533 chr13 114364328 + 35403436 35404763 L1PA3long 6157 + 4827 6157 15442 483 0 4 69 0 1 99 2 0 674 chain 33106 chr13 114364328 + 35407686 35408176 L1PA13 3608 + 3047 3518 39429 40 1 0 45 1 0 28 1 0 113 2 0 63 1 0 60 2 0 48 8 4 18 1 0 26 1 0 12 5 0 14 chain 11041 chr13 114364328 + 35492069 35492334 L1PB1 5432 + 5180 5427 68497 40 2 1 15 1 0 41 91 72 21 0 7 14 1 0 13 1 0 18 2 0 5 chain 31351 chr13 114364328 + 35581548 35581897 L1PA2 6032 + 5684 6032 40846 335 1 0 13 chain 17563 chr13 114364328 + 35637846 35638241 L1MB2 1706 + 1317 1694 59159 48 35 28 60 1 0 101 103 93 47 chain 12194 chr13 114364328 + 35652204 35652348 L1PA6 6164 + 6014 6162 66486 135 0 4 9 chain 41510 chr13 114364328 + 35689189 35690032 MLT2A2 560 + 0 560 33668 6 0 1 10 0 2 184 0 1 52 5 4 74 1 0 24 0 12 144 297 0 46 chain 3024 chr13 114364328 + 35702412 35702446 MLT2B4 540 + 506 540 99632 34 chain 26208 chr13 114364328 + 35707853 35708234 THE1C 375 + 0 375 47403 118 4 2 58 11 9 161 13 11 16 chain 4397 chr13 114364328 + 35708497 35708649 MER53 195 - 27 195 88902 37 68 74 24 9 19 14 chain 28712 chr13 114364328 + 35739061 35739409 MLT2A1 477 + 0 357 43777 140 0 1 28 1 5 8 0 4 171 chain 24395 chr13 114364328 + 35740006 35740364 THE1B 368 + 0 368 50178 172 1 0 26 1 0 4 32 43 41 5 6 76 chain 4500 chr13 114364328 + 35740364 35740433 MER72 723 + 243 314 88324 7 1 0 11 4 7 46 chain 4351 chr13 114364328 + 35743779 35743834 MER4D 903 + 142 196 89166 4 1 0 50 chain 27996 chr13 114364328 + 35751302 35751810 L1PB1 5432 + 4901 5391 44870 202 1 2 10 3 0 8 0 12 11 1 0 12 15 9 40 0 1 4 11 9 11 5 4 39 6 5 16 1 0 4 2 0 7 10 1 19 2 0 4 1 0 12 11 9 18 1 0 21 chain 13557 chr13 114364328 + 35878553 35878761 L1MA3 4352 + 4105 4324 64244 7 1 0 68 1 0 37 0 18 25 2 0 22 8 6 27 1 0 9 chain 118672 chr13 114364328 + 35966507 35967846 SVA_B 1603 + 0 1603 15777 24 1 25 630 0 40 59 0 204 494 1 0 122 3 0 5 chain 14818 chr13 114364328 + 35969826 35970065 MLT1A0 366 + 83 350 62504 19 0 1 74 0 13 13 40 54 93 chain 32984 chr13 114364328 + 36005726 36006175 L1PA8 5853 + 5405 5847 39526 159 1 0 46 2 0 68 2 1 6 8 0 8 9 16 31 2 1 19 1 0 87 chain 63463 chr13 114364328 + 36055946 36056631 L1PA2 6032 + 5349 6032 25532 670 2 0 13 chain 90443 chr13 114364328 + 36066585 36067568 L1PA3long 6157 + 5174 6157 19597 983 chain 8546 chr13 114364328 + 36091251 36091363 L1PA8 5853 + 5741 5853 73568 19 2 1 39 0 1 52 chain 15616 chr13 114364328 + 36120357 36120549 Tigger3a 397 + 139 335 61513 40 0 4 152 chain 92884 chr13 114364328 + 36149600 36151056 L1PB1 5432 + 4002 5422 19198 25 0 10 8 22 12 296 1 2 87 12 5 4 0 1 98 1 0 15 3 5 58 3 0 159 7 12 53 3 1 250 1 2 8 4 1 24 2 1 5 1 0 16 19 13 35 1 0 12 2 1 12 8 7 41 1 0 15 1 0 4 2 0 9 7 0 13 30 25 23 11 10 11 1 0 13 1 0 18 chain 28598 chr13 114364328 + 36219647 36220027 THE1C 375 + 0 373 43957 69 0 1 55 3 0 10 3 0 154 1 0 60 1 0 24 chain 64987 chr13 114364328 + 36267845 36268820 L1PB3 3668 + 102 1052 25193 10 6 0 13 4 2 10 3 0 66 24 0 24 0 4 82 6 10 402 25 25 98 0 1 90 0 4 35 2 0 61 1 0 13 chain 38964 chr13 114364328 + 36316324 36316770 LTR7 482 + 0 482 35382 91 0 3 136 0 31 121 0 2 98 chain 297371 chr13 114364328 + 36316830 36320484 HERVH-int 3825 + 61 3825 6909 471 5 0 38 2 1 8 2 1 9 4 0 14 7 1 15 1 0 12 86 0 90 22 9 23 1 2 24 1 0 319 0 2 129 15 0 456 4 31 628 0 2 696 5 6 60 13 223 494 chain 2732 chr13 114364328 + 36317418 36317504 HERVH-int 3825 + 649 713 93265 8 0 20 6 2 0 15 2 1 7 39 0 7 chain 40787 chr13 114364328 + 36321740 36322191 LTR7 482 + 0 482 34106 264 0 31 187 chain 27823 chr13 114364328 + 36356406 36356823 MER4E 760 + 344 760 45151 16 2 4 37 0 1 5 1 0 5 1 0 24 14 10 38 4 8 39 10 8 221 chain 25433 chr13 114364328 + 36372660 36373017 THE1B 368 + 0 368 48578 39 1 16 112 6 5 27 2 0 102 0 1 4 8 6 56 chain 160753 chr13 114364328 + 36413712 36415933 L1PA11 4918 + 2301 4511 11701 18 0 1 57 3 4 57 0 2 6 11 9 77 30 16 8 0 9 223 3 0 186 6 9 120 11 7 234 8 9 183 0 1 327 4 5 453 2 0 8 1 2 9 1 2 4 1 0 45 4 3 9 2 0 71 16 13 23 chain 152618 chr13 114364328 + 36424512 36426700 L1MA2 4263 + 1978 4100 12194 33 4 0 171 11 0 47 1 0 91 1 0 89 5 6 103 1 0 38 0 4 82 1 0 114 20 40 112 1 2 383 2 0 78 4 0 58 51 0 133 24 19 4 0 1 76 1 0 108 0 1 35 3 0 150 11 9 93 16 9 33 chain 26886 chr13 114364328 + 36617579 36617936 THE1B 368 + 0 368 46429 44 0 15 113 1 0 28 2 0 93 1 0 75 chain 44077 chr13 114364328 + 36626528 36627078 MER41A 554 + 0 554 32100 406 1 5 143 chain 64379 chr13 114364328 + 36707726 36708426 L1PA4 6152 + 5178 5878 25332 700 chain 4550 chr13 114364328 + 36728623 36728674 MADE1 96 + 45 96 88061 51 chain 16973 chr13 114364328 + 36796143 36796359 LTR71A 459 + 170 389 59831 29 2 4 20 0 1 165 chain 23262 chr13 114364328 + 36859354 36859679 MER41A 554 + 42 372 51985 45 5 6 29 3 6 59 0 10 89 9 0 86 chain 8668 chr13 114364328 + 36864316 36864417 MER41B 635 + 0 101 73297 101 chain 4768 chr13 114364328 + 36930702 36930893 L1MA8 2339 + 2179 2333 86868 19 13 0 36 3 1 12 82 60 26 chain 9430 chr13 114364328 + 36956649 36956762 LTR17 781 + 255 367 71637 72 1 0 40 chain 37760 chr13 114364328 + 36956762 36957209 HERV17-int 4347 + 3909 4347 36236 95 10 1 342 chain 26287 chr13 114364328 + 36958652 36958981 LTR17 781 + 0 326 47292 61 1 0 118 1 0 49 1 0 98 chain 4026 chr13 114364328 + 36962789 36962870 MER33 330 + 42 141 91262 44 21 39 16 chain 124648 chr13 114364328 + 37052023 37053689 L1PA8 5853 + 4185 5853 14752 91 4 5 166 0 3 55 0 5 170 0 1 33 22 13 195 7 6 59 0 4 16 0 2 66 0 4 114 18 21 138 0 1 41 5 0 168 1 0 41 14 12 61 4 3 8 2 1 52 2 1 19 1 0 93 chain 209005 chr13 114364328 + 37053805 37056139 L1PA4 6152 + 3174 5515 9382 39 0 1 676 0 2 809 0 1 697 0 3 113 chain 20776 chr13 114364328 + 37163266 37163514 L1PA7 6471 + 6219 6467 55395 248 chain 62558 chr13 114364328 + 37188122 37189067 L1PREC2 3366 + 1035 1968 25742 202 10 12 4 1 0 40 1 0 17 23 25 46 1 0 141 12 13 61 1 0 50 0 1 20 13 12 67 0 1 19 20 6 196 chain 6655 chr13 114364328 + 37199589 37199668 MSTA 426 + 347 426 78794 79 chain 101230 chr13 114364328 + 37205378 37206509 L1PA5 6144 + 5011 6142 18158 1131 chain 544521 chr13 114364328 + 37250340 37256375 L1PA3long 6157 + 0 6152 1054 103 7 0 49 0 1 623 0 128 1863 6 0 421 0 1 2963 chain 156181 chr13 114364328 + 37279608 37281396 SVA_D 2077 + 0 2070 11991 7 5 0 18 5 0 517 0 40 256 0 123 42 1 0 12 1 53 36 0 78 39 0 1 166 0 1 55 1 0 322 1 0 304 chain 22100 chr13 114364328 + 37407604 37407871 L1PA7 6471 + 6193 6459 53695 125 1 0 141 chain 77079 chr13 114364328 + 37502191 37503221 L1PA8 5853 + 4815 5853 22296 191 1 3 75 1 0 75 40 49 269 0 1 32 1 6 48 1 0 44 2 0 74 1 0 6 1 0 52 2 1 10 1 0 9 2 1 92 chain 183175 chr13 114364328 + 37505118 37507652 L1PBa1 4058 + 115 2640 10430 98 2 1 112 0 1 104 3 1 28 1 2 19 8 7 16 63 62 52 13 12 25 5 4 74 1 2 172 8 9 176 7 16 199 0 4 129 0 1 15 21 4 134 7 2 62 0 2 2 1 0 61 1 0 304 0 1 155 0 6 28 0 4 213 1 2 19 10 0 185 chain 73184 chr13 114364328 + 37507738 37508824 L1PB1 5432 + 4353 5424 23282 13 0 13 196 8 5 46 3 0 178 2 0 8 5 3 179 2 3 4 1 0 100 0 13 24 1 0 9 1 0 9 6 2 9 2 0 53 2 1 16 1 0 44 1 0 15 3 0 15 8 0 16 8 5 14 2 0 24 1 0 21 4 3 9 2 1 16 1 0 4 chain 3064 chr13 114364328 + 37557779 37557831 L1PA14 3548 + 3291 3343 99184 29 3 4 8 1 0 11 chain 38840 chr13 114364328 + 37558859 37559396 LTR3B_ 500 + 0 500 35477 113 6 2 41 5 6 142 7 0 103 0 2 20 29 0 71 chain 229317 chr13 114364328 + 37605780 37608511 L1PA7 6471 + 3731 6467 8764 218 0 1 71 0 2 14 0 3 447 0 1 464 1 0 67 1 0 225 1 0 33 1 2 342 1 0 515 5 6 325 chain 11498 chr13 114364328 + 37760642 37760809 MER30 238 + 36 222 67752 71 15 33 48 0 1 33 chain 54966 chr13 114364328 + 37762281 37762877 L1PA3long 6157 + 5561 6157 27885 596 chain 14409 chr13 114364328 + 37762889 37763084 HUERS-P3b-int 2065 + 67 258 63022 27 4 0 4 0 1 5 1 0 154 chain 60626 chr13 114364328 + 37818225 37818959 L1PA7 6471 + 5734 6467 26196 579 18 18 127 1 0 9 chain 26793 chr13 114364328 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135 5 6 55 3 0 13 0 1 12 chain 41606 chr13 114364328 + 38212965 38213508 MLT2A2 560 + 0 556 33622 218 0 2 21 5 4 79 0 1 74 3 14 143 chain 13377 chr13 114364328 + 38221546 38221764 L1PA8 5853 + 5639 5853 64500 40 14 12 48 3 2 12 8 7 93 chain 189091 chr13 114364328 + 38266125 38270712 L1PA10 4194 + 597 3160 10158 26 0 9 49 15 14 489 0 1 65 5 6 31 17 19 174 2042 0 631 0 1 5 1 0 37 0 4 471 0 1 26 5 4 23 12 13 4 0 1 459 chain 128640 chr13 114364328 + 38267276 38268871 L1PA7 6471 + 4702 6313 14199 87 3 0 119 0 10 8 0 4 245 0 1 37 0 7 404 2 0 24 0 1 63 0 3 366 0 4 113 0 1 86 6 4 16 8 0 8 chain 294558 chr13 114364328 + 38272160 38276032 L1PA8 5853 + 1946 5853 6992 72 4 0 258 0 2 259 1 5 158 0 2 163 0 2 21 1 0 30 0 1 242 0 4 224 9 6 672 0 1 54 0 1 55 1 0 86 3 14 62 6 4 18 6 4 125 23 37 145 11 10 274 12 15 34 0 3 5 32 34 45 1 2 294 13 18 157 1 0 46 2 0 69 1 0 13 1 0 48 2 1 19 2 1 92 chain 252300 chr13 114364328 + 38278937 38282318 L1PA7 6471 + 3376 6465 8173 127 1 0 71 0 5 27 1 0 492 303 0 473 1 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13280 chr13 114364328 + 38750169 38750346 THE1B 368 + 0 179 64662 15 2 0 25 0 5 123 1 0 11 chain 19347 chr13 114364328 + 38779102 38779384 L1PA8 5853 + 5568 5844 57183 40 2 0 70 2 1 14 9 8 39 2 1 19 2 1 83 chain 14527 chr13 114364328 + 38855581 38855872 L1PB1 5432 + 5159 5424 62868 9 2 0 52 2 1 15 1 0 45 23 19 14 12 3 10 2 0 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 14 1 0 6 chain 8754 chr13 114364328 + 38939411 38939520 MLT1A0 366 + 221 330 73093 109 chain 40542 chr13 114364328 + 39052863 39053411 MLT2A2 560 + 0 560 34277 183 16 15 208 0 11 52 1 0 21 0 3 67 chain 86382 chr13 114364328 + 39085238 39086393 MER41-int 2638 + 1476 2636 20344 198 34 33 169 2 0 146 2 0 5 0 1 4 0 1 47 0 3 12 5 0 17 6 15 217 0 2 152 1 0 138 chain 37210 chr13 114364328 + 39086420 39086958 MER41B 635 + 10 547 36607 47 5 0 66 3 4 283 6 9 37 28 27 26 3 4 34 chain 3991 chr13 114364328 + 39122004 39122055 MER45A 178 + 94 145 91514 51 chain 44362 chr13 114364328 + 39138970 39139464 L1PA5 6144 + 5649 6143 31909 494 chain 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52 0 1 193 chain 9903 chr13 114364328 + 40339695 40339843 L1PA8 5853 + 5660 5804 70605 22 8 6 52 2 1 19 1 0 44 chain 554965 chr13 114364328 + 40356290 40362321 L1PA2 6032 + 2 6032 415 254 1 0 5776 chain 17302 chr13 114364328 + 40378307 40378633 MSTA 426 + 67 411 59455 38 25 43 11 41 41 4 1 0 48 10 11 148 chain 4287 chr13 114364328 + 40388389 40388438 MER96B 391 + 70 119 89592 49 chain 38362 chr13 114364328 + 40393068 40393578 L1PA8 5853 + 5351 5853 35804 213 1 0 46 2 0 68 12 10 52 2 1 19 1 0 15 18 17 61 chain 3258 chr13 114364328 + 40396525 40396676 MER6B 211 - 34 178 97387 17 1 0 15 97 91 21 chain 314015 chr13 114364328 + 40415720 40419385 L1PA6 6164 + 2482 6162 6531 403 0 1 303 0 2 6 1 0 30 0 1 295 1 0 169 5 6 554 13 0 160 0 2 265 0 1 59 0 1 324 2 23 228 5 8 828 3 0 11 chain 24894 chr13 114364328 + 40424715 40424989 AluYk4 311 + 11 285 49447 274 chain 31914 chr13 114364328 + 40551634 40552086 MER87B 500 + 0 465 40399 98 6 8 74 3 6 54 10 18 207 chain 16499 chr13 114364328 + 40571189 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41016636 41016943 AluSp 311 + 4 311 47587 307 chain 57128 chr13 114364328 + 41036471 41037107 L1PA5 6144 + 5501 6137 27221 636 chain 22267 chr13 114364328 + 41077014 41077344 L1PB4 2604 + 277 612 53453 12 0 6 85 1 0 14 10 9 67 0 2 9 0 3 24 0 4 77 8 0 23 chain 19650 chr13 114364328 + 41080934 41081171 AluSc 308 + 17 255 56855 60 0 1 177 chain 9152 chr13 114364328 + 41098258 41098375 MER50B 698 + 527 646 72230 14 1 0 34 0 2 55 0 1 13 chain 22737 chr13 114364328 + 41106118 41106413 AluSp 311 + 0 301 52773 43 8 14 244 chain 7708 chr13 114364328 + 41108558 41108652 MER52C 1267 + 1153 1246 75610 89 1 0 4 chain 10632 chr13 114364328 + 41126442 41126595 THE1B 368 + 217 368 69170 13 1 0 12 1 0 37 0 1 23 0 3 5 5 1 56 chain 16224 chr13 114364328 + 41136877 41137076 MSTB 430 + 231 430 60716 199 chain 14746 chr13 114364328 + 41138767 41139028 MER21A 919 + 663 919 62602 24 32 18 19 1 2 79 0 16 45 3 0 14 3 0 32 2 0 7 chain 44862 chr13 114364328 + 41159943 41160425 LTR7 482 + 0 482 31657 482 chain 5940 chr13 114364328 + 41162042 41162109 MER21-int 1364 + 60 127 81317 67 chain 4176 chr13 114364328 + 41180957 41181041 L1MD2 1676 + 1385 1471 90284 39 4 7 10 11 10 20 chain 12817 chr13 114364328 + 41200896 41201605 MSTC 436 + 17 407 65420 79 6 7 31 63 39 35 1 7 24 29 0 3 34 0 9 7 71 13 333 30 42 chain 4351 chr13 114364328 + 41206202 41206310 MSTC 436 + 190 319 89164 40 44 65 24 chain 5751 chr13 114364328 + 41243577 41243676 LTR40a 516 + 387 512 82127 11 2 0 6 10 38 70 chain 16068 chr13 114364328 + 41269780 41270017 LTR8 732 + 0 269 60936 15 0 1 13 1 10 133 0 3 23 5 8 21 2 18 24 chain 8888 chr13 114364328 + 41275793 41275920 MER75 514 + 380 514 72801 84 12 19 31 chain 13003 chr13 114364328 + 41279290 41279500 MER4B 649 + 212 421 65111 4 0 1 27 1 2 8 2 0 45 20 19 103 chain 59388 chr13 114364328 + 41279514 41280574 MER4E 760 + 0 755 26541 23 0 1 140 1 0 26 2 0 97 0 1 30 0 4 96 305 0 115 7 5 76 1 0 141 chain 91108 chr13 114364328 + 41288583 41290792 HSMAR1 1287 + 0 1286 19484 76 0 1 27 53 61 390 1 0 9 8 6 51 337 22 543 614 0 100 chain 11827 chr13 114364328 + 41377297 41377519 MER47A 366 + 72 295 67157 24 67 68 131 chain 5201 chr13 114364328 + 41417690 41417767 MLT1A0 366 + 226 305 84672 16 4 6 57 chain 9801 chr13 114364328 + 41455738 41455896 LTR2C 499 + 328 480 70813 11 1 0 37 15 11 48 1 0 45 chain 30698 chr13 114364328 + 41504604 41505163 L1PB1 5432 + 4883 5420 41388 131 0 2 87 1 2 9 3 0 24 1 0 7 2 1 10 6 2 9 2 0 45 0 10 15 9 8 37 1 0 14 2 0 6 18 6 19 8 5 13 18 16 9 1 0 19 6 5 13 1 0 13 chain 46693 chr13 114364328 + 41542826 41543456 LTR12 884 + 0 736 30776 26 1 0 36 4 111 205 2 0 230 40 42 86 chain 3613 chr13 114364328 + 41557183 41557360 L1MB7 1623 + 1248 1409 94322 18 6 2 12 43 37 5 1 0 16 46 41 30 chain 102511 chr13 114364328 + 41571398 41572810 SVA_A 1864 + 41 1864 18008 52 0 11 73 1 0 403 37 0 30 6 227 33 7 225 48 1 0 26 2 0 26 9 6 18 0 1 4 25 14 16 12 8 48 9 6 29 0 16 68 0 6 429 chain 61319 chr13 114364328 + 41574188 41575051 L1PB2 3958 + 2312 3838 26028 14 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11 8 2 5 1 0 8 1 0 5 3 1 6 3 0 6 1 0 15 chain 5938 chr13 114364328 + 41808184 41808251 L1MA3 4352 + 2063 2130 81321 67 chain 26078 chr13 114364328 + 41829176 41829527 L1PB2 3958 + 3492 3838 47610 53 1 0 73 1 0 59 3 2 74 2 0 22 1 0 36 0 1 26 chain 19081 chr13 114364328 + 41840231 41840475 L1PA7 6471 + 6226 6470 57463 28 0 3 60 1 0 50 4 0 89 0 2 12 chain 3599 chr13 114364328 + 41851220 41851262 L1M3e 1964 + 1203 1245 94427 42 chain 30461 chr13 114364328 + 41862976 41863373 MLT2A1 477 + 0 397 41615 142 0 1 26 1 5 150 1 0 60 5 1 12 chain 137590 chr13 114364328 + 41873072 41874580 L1PA3long 6157 + 2883 4390 13297 294 2 1 1212 chain 7201 chr13 114364328 + 41905117 41905204 U6 107 + 0 87 76943 87 chain 265500 chr13 114364328 + 41920384 41923433 L1PA5 6144 + 3078 6132 7812 86 2 1 5 1 0 316 0 4 179 1 0 205 1 0 470 0 4 419 0 1 1364 chain 38077 chr13 114364328 + 41949192 41949635 L1PA7 6471 + 6027 6470 36011 443 chain 221271 chr13 114364328 + 42030899 42033316 L1PA3long 6157 + 3726 6143 8999 1249 1 0 685 0 1 482 chain 7301 chr13 114364328 + 42143926 42144005 L1PA4 6152 + 3056 3135 76663 79 chain 14365 chr13 114364328 + 42248685 42248896 Tigger3c 601 + 318 540 63091 7 0 5 53 7 11 124 3 5 17 chain 5470 chr13 114364328 + 42278032 42278159 MER20 218 + 90 218 83350 43 16 0 3 5 0 8 15 37 37 chain 14205 chr13 114364328 + 42358790 42358963 L1PREC2 3366 + 817 990 63314 173 chain 559255 chr13 114364328 + 42424880 42430912 L1PA2 6032 + 0 6032 191 6032 chain 29270 chr13 114364328 + 42440806 42441116 AluYg6 310 + 0 310 42936 310 chain 16207 chr13 114364328 + 42448052 42448399 THE1C 375 + 14 375 60736 33 62 71 51 1 2 5 1 0 10 45 51 104 1 0 34 chain 208251 chr13 114364328 + 42462166 42464709 L1PA7 6471 + 3281 6466 9409 237 12 12 1049 1 0 375 0 1 62 1 2 130 15 647 501 20 18 60 0 1 39 0 10 41 chain 144932 chr13 114364328 + 42467110 42469115 L1MA2 4263 + 1266 3277 12693 65 8 12 64 1 0 18 3 8 54 1 2 43 18 20 121 0 1 167 3 0 6 0 3 124 14 1 59 1 7 17 13 12 140 6 8 382 3 5 36 6 5 51 5 0 43 26 29 119 6 8 7 1 0 374 chain 65230 chr13 114364328 + 42476269 42476986 SVA_A 1864 + 1143 1860 25127 717 chain 528356 chr13 114364328 + 42515977 42522425 L1PA7 6471 + 0 6457 1901 352 0 1 50 5 0 6 4 0 10 0 1 100 0 1 127 5 1 453 0 2 861 0 10 234 0 1 426 1 0 65 1 0 395 0 4 126 0 1 136 0 1 6 1 3 120 1 0 174 0 1 161 1 0 506 0 1 238 1 0 4 0 1 55 2 0 352 7 6 550 1 2 75 3 0 193 0 2 281 0 1 43 0 2 316 chain 2777 chr13 114364328 + 42534839 42534892 MLT1K 546 + 146 200 101782 24 9 10 20 chain 168945 chr13 114364328 + 42556234 42558101 L1PA3long 6157 + 4286 6157 11158 355 1 0 35 1 6 1475 chain 90858 chr13 114364328 + 42559592 42560853 LTR12C 1709 + 0 1709 19528 41 0 4 58 2 3 150 7 8 27 4 5 42 0 43 210 1 24 36 0 278 183 1 0 5 3 1 97 44 13 266 0 131 84 chain 19220 chr13 114364328 + 42616337 42616779 MER50 708 + 451 708 57327 114 188 0 83 1 4 56 chain 14104 chr13 114364328 + 42679699 42680284 MER49 923 + 0 286 63447 90 69 74 47 306 2 5 0 1 60 1 0 7 chain 88821 chr13 114364328 + 42710787 42711803 LTR5A 1029 + 0 1029 19889 134 0 13 882 chain 23077 chr13 114364328 + 42715185 42715460 AluSc 308 + 0 281 52247 77 0 6 198 chain 3180 chr13 114364328 + 42763340 42763375 MADE1 96 - 3 38 98100 35 chain 17951 chr13 114364328 + 42799661 42799897 L1PA16 3655 + 3360 3593 58701 219 6 3 11 chain 239020 chr13 114364328 + 42856666 42859287 L1PA3long 6157 + 3532 6156 8493 619 0 1 488 0 1 658 0 1 856 chain 24720 chr13 114364328 + 42862297 42862629 THE1B 368 + 0 357 49693 40 0 15 119 1 0 133 16 27 23 chain 43073 chr13 114364328 + 42866151 42866692 MLT2A2 560 + 0 560 32732 163 0 9 60 1 0 170 0 11 147 chain 80560 chr13 114364328 + 42943733 42944679 L1PA7 6471 + 5521 6470 21522 93 0 3 853 chain 4357 chr13 114364328 + 42951947 42952054 LTR12 884 + 247 317 85010 24 11 0 31 37 11 4 chain 5978 chr13 114364328 + 42952054 42952143 LTR12 884 + 78 274 81167 37 1 0 24 0 108 27 chain 138117 chr13 114364328 + 42965820 42967299 SVA_F 1814 + 9 1814 13257 846 0 290 78 0 37 211 1 0 343 chain 42391 chr13 114364328 + 42982009 42982552 MER41A 554 + 0 544 33135 421 6 7 116 chain 3746 chr13 114364328 + 43096668 43097067 MLT1H 522 + 0 500 93277 9 0 6 13 1 0 8 1 37 22 89 92 14 214 271 28 chain 110433 chr13 114364328 + 43162235 43163435 L1PA2 6032 + 4828 6028 17013 1200 chain 9219 chr13 114364328 + 43180080 43180471 LTR12 884 + 173 677 72084 8 1 0 24 19 8 37 43 0 20 1 43 18 6 7 40 147 272 27 chain 39434 chr13 114364328 + 43261573 43261999 L1PA2 6032 + 5603 6029 35052 426 chain 70024 chr13 114364328 + 43506224 43506988 L1PA4 6152 + 5379 6143 23990 764 chain 70347 chr13 114364328 + 43531313 43532083 L1PA4 6152 + 5380 6151 23903 763 0 1 7 chain 3895 chr13 114364328 + 43773265 43773319 L1MB5 1630 + 1561 1614 92168 39 2 1 13 chain 34447 chr13 114364328 + 43824391 43824894 L1PA17 2846 + 2194 2692 38400 59 0 1 146 0 1 18 0 4 76 4 0 17 2 1 18 1 0 57 2 0 8 9 8 28 1 0 14 1 0 42 chain 122864 chr13 114364328 + 43834103 43835462 L1PA4 6152 + 4784 6143 15044 1359 chain 3048 chr13 114364328 + 43838224 43838257 MER57C2 434 + 401 434 99329 33 chain 4967 chr13 114364328 + 43841047 43841101 L1P1 4361 + 102 156 85818 54 chain 233325 chr13 114364328 + 43852315 43855591 L1PA13 3608 + 86 3335 8655 4 1 0 16 7 5 27 3 0 26 2 1 12 3 0 25 28 16 73 2 0 125 15 13 16 2 0 15 8 3 18 1 0 17 3 1 17 2 0 18 1 0 6 0 1 89 2 0 414 1 0 9 3 1 459 7 11 68 7 0 89 0 7 29 1 0 135 0 4 22 0 5 12 3 0 14 1 0 72 8 13 9 0 1 4 1 0 19 3 6 381 0 2 209 1 0 443 3 0 6 13 33 18 50 34 114 2 0 62 chain 22448 chr13 114364328 + 43876836 43877119 AluSx 319 + 8 296 53202 199 3 7 43 0 1 38 chain 2756 chr13 114364328 + 43887636 43887687 L1MB2 1706 + 45 95 101921 24 8 7 19 chain 3340 chr13 114364328 + 43928201 43928239 MLT2A2 560 + 520 558 96686 38 chain 5993 chr13 114364328 + 43957447 43957518 L1PA7 6471 + 5810 5879 81105 39 2 0 30 chain 50344 chr13 114364328 + 44001404 44002043 LTR12 884 + 0 869 29436 25 1 0 30 0 107 157 0 25 34 2 0 55 2 0 172 0 103 161 chain 80317 chr13 114364328 + 44037536 44038418 L1PA3long 6157 + 4232 5114 21571 882 chain 3940 chr13 114364328 + 44075822 44075866 MER33 330 + 21 65 91831 44 chain 4464 chr13 114364328 + 44080237 44080288 MSTB-int 1649 + 1593 1644 88536 51 chain 68067 chr13 114364328 + 44148952 44149758 L1PA7 6471 + 5661 6467 24441 806 chain 47512 chr13 114364328 + 44202440 44202978 L1PA4 6152 + 5606 6143 30474 292 1 0 245 chain 121280 chr13 114364328 + 44328106 44329577 L1PA8 5853 + 4376 5853 15301 428 0 1 169 0 12 24 3 1 550 5 4 43 2 0 5 0 2 60 5 4 9 2 1 51 2 1 19 1 0 93 chain 12233 chr13 114364328 + 44348465 44348612 MER2 342 + 132 279 66411 147 chain 23193 chr13 114364328 + 44354011 44354284 AluY 311 + 0 291 52089 41 0 18 232 chain 3214 chr13 114364328 + 44401729 44401792 MER5A 189 + 96 161 97762 27 17 19 19 chain 109367 chr13 114364328 + 44413392 44414764 LTR12C 1709 + 0 1709 17133 296 0 1 353 0 278 143 0 47 106 0 4 54 1 0 36 8 9 25 8 12 90 10 18 143 15 10 84 chain 3207 chr13 114364328 + 44417419 44417454 MLT2B2 565 + 525 560 97844 35 chain 14516 chr13 114364328 + 44479229 44479440 MER30 238 + 0 237 62882 20 4 16 30 0 6 29 10 18 118 chain 8305 chr13 114364328 + 44588382 44588557 MER61A 341 + 134 325 74150 29 34 49 27 17 18 68 chain 5682 chr13 114364328 + 44639945 44640016 MER3 215 + 54 125 82422 71 chain 26892 chr13 114364328 + 44680183 44680548 THE1B 368 + 0 368 46419 13 2 0 27 0 5 57 8 9 61 2 1 195 chain 3106 chr13 114364328 + 44695961 44696181 MamRep38 296 + 71 292 98746 26 165 166 29 chain 16684 chr13 114364328 + 44831940 44832132 L1PA6 6164 + 5971 6162 60170 187 1 0 4 chain 183515 chr13 114364328 + 44862137 44864198 L1PA5 6144 + 4081 6143 10411 1811 8 9 242 chain 23586 chr13 114364328 + 44873078 44873364 AluY 311 + 2 290 51454 87 0 1 36 0 1 134 0 2 5 3 1 21 chain 27805 chr13 114364328 + 44877778 44878136 THE1B 368 + 0 368 45175 40 0 15 113 2 0 120 5 2 78 chain 20780 chr13 114364328 + 44899571 44899901 L1PA8 5853 + 5529 5853 55390 35 1 0 45 2 0 69 13 11 38 18 17 16 1 0 33 9 10 50 chain 14401 chr13 114364328 + 44986713 44986898 Tigger1 2417 + 1738 1927 63034 20 0 4 165 chain 28828 chr13 114364328 + 45001025 45001383 THE1C 375 + 7 369 43585 128 0 4 230 chain 24333 chr13 114364328 + 45045146 45045440 AluSp 311 + 10 304 50275 294 chain 24412 chr13 114364328 + 45089799 45090097 AluSp 311 + 4 297 50148 116 5 0 177 chain 18448 chr13 114364328 + 45108533 45109108 MER4B 649 + 332 569 58169 142 339 0 15 0 1 79 chain 44826 chr13 114364328 + 45133302 45133953 LTR76 689 + 18 682 31685 31 0 3 77 6 2 118 1 2 42 9 12 24 0 12 35 5 6 9 0 1 157 1 2 89 2 0 7 16 13 22 chain 24478 chr13 114364328 + 45234769 45235070 AluSp 311 + 6 311 50067 264 2 0 6 0 6 29 chain 3793 chr13 114364328 + 45241463 45241604 MER3 215 - 6 163 92904 33 83 99 25 chain 22597 chr13 114364328 + 45290588 45290847 AluSp 311 + 30 289 52988 259 chain 27211 chr13 114364328 + 45314503 45314786 AluYa5 310 + 15 298 45950 283 chain 6805 chr13 114364328 + 45389181 45389269 L1MB3 1562 + 1464 1551 78300 59 1 0 28 chain 24663 chr13 114364328 + 45457025 45457403 MSTA 426 + 0 405 49782 55 1 0 46 7 12 31 8 15 45 5 2 20 0 2 8 3 0 60 1 21 88 chain 24981 chr13 114364328 + 45459869 45460207 THE1B 368 + 0 337 49315 69 12 13 90 3 1 164 chain 15912 chr13 114364328 + 45565489 45565803 THE1B 368 + 21 368 61136 23 23 38 27 1 3 49 20 26 11 35 45 125 chain 118241 chr13 114364328 + 45565803 45567349 THE1B-int 1605 + 0 1582 15841 32 1 2 148 0 12 69 6 7 22 6 5 131 3 28 164 0 2 100 7 6 566 20 17 271 chain 10663 chr13 114364328 + 45641765 45641935 MER41A 554 + 399 554 69110 68 1 6 54 22 2 25 chain 11117 chr13 114364328 + 45642132 45642295 PABL_A-int 1935 + 99 257 68382 9 2 0 26 8 5 118 chain 97163 chr13 114364328 + 45642300 45643584 MER41-int 2638 + 1363 2636 18640 512 2 0 36 3 1 115 13 18 110 1 0 27 1 0 42 0 2 39 0 1 16 25 15 38 3 0 301 chain 39137 chr13 114364328 + 45643593 45644059 MER41A 554 + 0 466 35259 466 chain 557009 chr13 114364328 + 45645030 45651067 L1PA2 6032 + 0 6032 297 526 4 0 3092 1 0 2414 chain 4582 chr13 114364328 + 45760313 45760394 MER5A1 166 + 41 123 87894 34 15 16 32 chain 12828 chr13 114364328 + 45778761 45778977 MER2 342 + 133 341 65396 7 10 0 84 0 1 53 24 25 38 chain 4791 chr13 114364328 + 45795620 45795674 LTR40a 516 + 406 460 86748 54 chain 10156 chr13 114364328 + 45817181 45817436 Tigger3a 397 + 58 371 70096 16 19 68 37 3 9 91 71 74 18 chain 21364 chr13 114364328 + 45860384 45860698 L1PA8 5853 + 5536 5853 54687 14 10 19 41 2 0 69 1 0 8 5 4 44 8 7 18 1 0 93 chain 4318 chr13 114364328 + 45915285 45915337 MER52D 1964 + 598 650 89381 52 chain 3704 chr13 114364328 + 45981268 45982025 L1PA3long 6157 + 5403 6154 93592 466 6 0 285 chain 7717 chr13 114364328 + 45992500 45992598 MER85 139 + 0 96 75572 73 2 0 23 chain 6599 chr13 114364328 + 45995768 45995849 MSTB 430 + 330 411 78974 81 chain 4124 chr13 114364328 + 46133293 46133342 L1PA16 3655 + 3520 3569 90626 49 chain 122061 chr13 114364328 + 46162266 46163652 SVA_C 1631 + 0 1631 15186 463 0 116 271 5 1 47 0 133 600 chain 23498 chr13 114364328 + 46193292 46193556 AluYk4 311 + 9 273 51595 264 chain 64139 chr13 114364328 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37943 338 1 0 86 chain 7605 chr13 114364328 + 46466605 46466698 HERVE-int 4064 + 2118 2211 75859 93 chain 49471 chr13 114364328 + 46467669 46468268 HERVE-int 4064 + 2118 2717 29778 93 3 0 173 0 1 20 0 1 216 0 1 94 chain 20424 chr13 114364328 + 46469912 46470174 AluY 311 + 0 257 55859 15 4 0 107 6 5 130 chain 35600 chr13 114364328 + 46471584 46472689 MER4A 717 + 0 473 37657 120 645 1 167 2 0 38 0 14 133 chain 14738 chr13 114364328 + 46573369 46573595 L1MA2 4263 + 3899 4116 62616 56 12 10 93 7 0 11 0 1 35 1 0 11 chain 29403 chr13 114364328 + 46626287 46626699 LTR7B 505 + 10 496 42731 95 0 10 60 0 38 12 3 27 28 0 2 37 1 2 44 1 0 23 0 1 52 14 13 42 chain 21588 chr13 114364328 + 46667443 46667687 L1PA5 6144 + 5901 6144 54377 101 1 0 142 chain 49866 chr13 114364328 + 46817893 46818909 MER52C 1267 + 0 1213 29613 113 20 21 58 36 188 116 9 5 41 9 12 128 75 115 53 96 92 36 1 0 14 71 0 6 0 71 30 0 5 38 0 5 66 chain 23535 chr13 114364328 + 46890072 46890348 AluSp 311 + 11 287 51529 276 chain 112757 chr13 114364328 + 46941829 46943190 L1PA7 6471 + 5055 6433 16712 140 0 4 270 0 5 147 0 4 265 3 4 49 0 1 192 0 1 186 0 1 109 chain 14340 chr13 114364328 + 46946170 46946377 MER75 514 + 294 513 63132 64 3 7 70 12 20 58 chain 4690 chr13 114364328 + 47042784 47042835 L1MB1 2102 + 1939 1990 87323 51 chain 284829 chr13 114364328 + 47103262 47107332 L1PA10 4194 + 223 4161 7289 9 2 0 9 34 30 16 79 51 18 1 0 5 3 2 7 1 0 10 1 0 15 7 0 8 1 0 85 2 0 334 0 18 363 1 0 67 7 0 8 2 13 336 0 6 128 11 0 232 30 34 81 0 1 168 126 0 210 15 12 97 19 28 46 0 5 22 4 8 251 2 0 167 7 1 12 0 4 101 2 1 297 0 2 339 7 18 183 0 1 30 8 6 32 1 0 11 chain 19770 chr13 114364328 + 47209932 47210171 AluSg4 309 + 70 307 56711 61 2 0 176 chain 187468 chr13 114364328 + 47295397 47297758 L1PA8A 6298 + 3918 6291 10236 39 6 7 175 3 0 322 0 1 396 1 7 24 1 4 168 1 0 33 1 0 392 1 0 93 5 6 379 0 1 209 5 6 91 0 4 16 chain 90892 chr13 114364328 + 47315763 47316934 L1PA8 5853 + 4691 5850 19524 234 0 2 76 14 6 77 2 1 345 6 7 125 1 0 46 2 0 69 1 0 8 0 6 7 7 1 30 1 0 9 2 1 109 chain 106116 chr13 114364328 + 47343774 47345413 L1PB1 5432 + 3744 5277 17554 125 25 18 518 1 0 71 0 5 97 0 1 41 0 6 5 28 0 173 3 11 252 129 50 21 2 0 6 1 0 12 2 0 3 2 0 8 14 12 41 19 17 40 chain 503838 chr13 114364328 + 47378655 47384267 L1PA3long 6157 + 6 6149 3003 88 0 526 425 0 1 2143 1 0 684 0 1 483 0 4 698 1 0 833 1 0 85 7 9 163 chain 20106 chr13 114364328 + 47432197 47432472 L1PA8 5853 + 5583 5853 56252 25 2 0 69 4 3 60 2 1 19 1 0 93 chain 102779 chr13 114364328 + 47451717 47453029 L1PA8A 6298 + 4969 6287 17976 274 0 6 171 0 1 38 32 8 22 1 4 79 0 1 103 0 1 492 0 18 100 chain 27098 chr13 114364328 + 47456317 47456612 AluYb8 318 + 21 316 46129 295 chain 465579 chr13 114364328 + 47463457 47469623 L1PA8A 6298 + 77 6287 3974 23 4 1 23 57 46 6 1 0 13 2 0 9 26 23 8 1 0 5 2 1 9 1 0 7 11 6 9 2 0 33 14 13 16 8 0 77 2 0 21 1 0 7 4 2 76 1 0 253 18 18 311 0 4 25 0 3 15 5 6 76 12 10 22 0 1 110 4 7 376 0 1 192 4 1 452 0 2 97 2 1 121 1 2 80 0 70 198 0 4 376 0 4 17 6 0 40 22 1 43 1 0 30 0 1 86 0 1 303 0 2 54 0 5 143 0 1 192 0 1 11 0 1 305 1 0 4 0 1 748 0 5 120 5 9 18 0 3 214 6 6 498 0 5 70 chain 45128 chr13 114364328 + 47530769 47531280 L1PA3long 6157 + 5644 6156 31509 316 1 3 189 1 0 4 chain 41820 chr13 114364328 + 47532809 47533429 L1PBa 3878 + 1958 2567 33471 36 25 13 164 6 8 118 1 0 162 2 1 57 11 12 38 chain 182089 chr13 114364328 + 47535022 47537219 L1PA7 6471 + 4097 6469 10489 177 0 2 117 0 58 430 1 2 72 2 0 6 4 5 22 1 3 119 0 1 510 1 0 284 0 110 167 0 3 284 chain 502347 chr13 114364328 + 47563613 47570010 L1PA7 6471 + 2 6452 3048 199 1 0 26 17 18 76 15 11 80 11 0 154 8 1 186 0 13 78 0 1 5 16 18 17 2 0 328 0 4 50 19 20 421 1 0 45 7 24 425 0 1 316 0 2 116 1 3 39 0 5 354 2 1 47 10 14 384 17 13 54 0 4 16 0 3 1085 4 7 8 0 4 199 0 1 200 0 1 4 1 0 222 0 5 163 0 5 121 0 4 95 0 2 19 0 3 27 4 0 105 0 1 597 chain 5294 chr13 114364328 + 47571131 47571195 Tigger3c 601 + 465 529 84228 64 chain 35255 chr13 114364328 + 47595878 47596479 LTR12_ 688 + 0 688 37860 93 0 2 23 3 28 21 42 0 92 17 16 145 69 39 26 0 133 70 chain 62790 chr13 114364328 + 47603855 47604528 L1PA2 6032 + 5358 6031 25683 673 chain 429542 chr13 114364328 + 47632137 47637918 L1PA8A 6298 + 34 5828 4753 6 1 0 18 2 1 7 3 0 5 2 0 7 6 1 23 3 0 20 47 36 15 1 0 4 1 0 10 2 0 13 77 65 43 1 0 22 6 0 78 2 0 13 2 1 10 1 0 3 1 0 55 3 4 17 1 0 192 2 3 55 10 12 39 18 21 283 1 4 9 1 4 403 16 9 19 0 2 8 0 3 43 20 17 655 9 12 147 3 5 44 14 16 36 0 1 167 1 4 245 0 4 79 0 4 147 8 12 48 1 0 69 0 1 12 24 21 73 0 8 420 2 5 272 0 2 532 0 2 66 1 0 108 5 8 26 0 1 401 0 13 111 1 0 80 0 6 59 2 6 263 chain 16894 chr13 114364328 + 47662579 47662792 MLT2A1 477 + 20 232 59920 148 5 2 9 0 1 24 0 1 27 chain 198393 chr13 114364328 + 47668114 47670326 L1PA4 6152 + 3305 5520 9760 113 3 0 631 1 3 1252 0 4 212 chain 58920 chr13 114364328 + 47685799 47686493 L1PA7 6471 + 5762 6456 26685 369 1 0 307 0 1 17 chain 36268 chr13 114364328 + 47692059 47692469 L1PA7 6471 + 5934 6344 37227 410 chain 9946 chr13 114364328 + 47692469 47692583 L1PA7 6471 + 6345 6459 70536 114 chain 556742 chr13 114364328 + 47712144 47718298 L1PA3long 6157 + 4 6153 311 437 7 1 5127 0 1 583 chain 17825 chr13 114364328 + 47727007 47727249 L1PA8 5853 + 5615 5853 58855 67 1 0 11 4 3 48 1 0 16 2 1 92 chain 509924 chr13 114364328 + 47734791 47742334 L1PA6 6164 + 1 6154 2775 159 14 15 235 1 0 44 0 1 54 2 1 119 5 6 152 0 17 213 0 1 143 0 1 92 1 0 198 1 0 182 0 1 697 0 2 252 0 13 591 0 1 4 1 0 105 1 0 1000 0 2 60 0 4 292 0 1 23 0 1 14 5 0 99 0 1 50 0 29 58 0 1 290 2 0 124 4 0 669 1451 0 136 chain 4974 chr13 114364328 + 47740833 47740890 L1PA6 6164 + 6104 6161 85785 57 chain 50136 chr13 114364328 + 47741621 47742196 L1PA6 6164 + 5440 6015 29510 575 chain 59433 chr13 114364328 + 47752781 47753486 L1PA7 6471 + 3814 4520 26521 672 0 1 33 chain 160181 chr13 114364328 + 47753490 47755411 L1PA7 6471 + 4525 6467 11740 140 0 8 796 0 5 152 0 3 69 0 2 239 0 1 32 5 6 51 0 2 105 0 1 211 2 0 119 chain 3534 chr13 114364328 + 47776736 47776792 MER53 195 - 105 162 94990 17 4 5 35 chain 551616 chr13 114364328 + 47781888 47787912 L1PA2 6032 + 1 6027 630 782 0 2 153 1 0 1631 1 0 817 0 1 1125 1 2 1513 chain 20028 chr13 114364328 + 47789947 47790251 THE1A 353 + 0 301 56344 109 2 1 84 1 0 16 26 25 5 0 1 20 1 0 40 chain 127772 chr13 114364328 + 47790299 47791876 THE1A-int 1579 + 0 1579 14311 270 0 3 1156 1 0 150 chain 12717 chr13 114364328 + 47792282 47792576 L1MB8 1703 + 1449 1678 65585 132 114 50 7 0 2 22 3 0 16 chain 4331 chr13 114364328 + 47804196 47804246 L1PA7 6471 + 5281 5331 89284 50 chain 94754 chr13 114364328 + 47804254 47805372 L1PA7 6471 + 5338 6461 18938 283 0 3 74 0 2 142 0 1 358 2 0 196 0 1 63 chain 5973 chr13 114364328 + 47832180 47832256 MER45A 178 + 76 152 81185 76 chain 13871 chr13 114364328 + 47863749 47863946 L1PB4 2604 + 2002 2202 63766 146 9 12 42 chain 175167 chr13 114364328 + 47899289 47901356 L1PA7 6471 + 4397 6470 10820 39 0 3 472 1 0 38 1 0 672 0 3 7 0 1 71 1 0 366 0 1 128 10 11 261 chain 504676 chr13 114364328 + 47907966 47914102 L1PA6 6164 + 0 6158 2982 449 19 0 67 2 0 51 15 14 115 6 7 34 0 2 48 0 17 122 1 5 257 1 2 382 0 2 187 0 1 572 1 0 323 0 4 535 0 1 41 0 5 233 0 3 222 0 3 670 0 1 940 0 3 73 8 7 178 5 3 579 chain 199373 chr13 114364328 + 47919947 47924517 L1PB1 5432 + 1610 5418 9736 100 5 4 101 1 0 41 0 1 78 19 20 358 0 1 174 12 0 10 7 6 38 0 156 53 23 27 52 3 0 411 7 8 136 1 0 4 0 1 137 0 13 44 319 0 26 1 12 18 0 2 88 1 2 78 17 16 166 23 9 39 4 0 99 21 20 52 318 15 225 1 0 86 1009 738 5 1 0 16 24 12 18 3 1 4 1 0 15 2 0 24 1 0 23 1 0 11 1 0 14 chain 3264 chr13 114364328 + 47925009 47925051 MADE1 96 + 45 96 97336 18 0 9 24 chain 2838 chr13 114364328 + 47948265 47948295 MER67A 545 + 0 30 101351 30 chain 31465 chr13 114364328 + 47956917 47957355 LOR1b 457 + 0 442 40764 27 5 15 106 3 0 48 10 5 70 2 1 112 0 3 55 chain 26303 chr13 114364328 + 47962776 47963198 LOR1b 457 + 0 456 47263 27 5 15 51 9 37 7 14 0 11 3 0 48 12 13 175 0 5 20 1 8 39 chain 8616 chr13 114364328 + 47973662 47973765 L1PA7 6471 + 6032 6137 73418 74 0 2 29 chain 27415 chr13 114364328 + 47973772 47974098 L1PA7 6471 + 6143 6470 45683 171 2 3 153 chain 150479 chr13 114364328 + 47977828 47979637 L1PA7 6471 + 4621 6461 12318 54 0 1 131 6 10 13 5 0 81 0 1 292 2 3 207 3 0 200 0 3 355 0 1 12 0 25 126 0 1 100 0 1 211 1 2 10 chain 23810 chr13 114364328 + 47993760 47994072 AluSp 311 + 10 296 51086 13 3 0 118 0 1 52 24 0 102 chain 204084 chr13 114364328 + 48015540 48017802 L1PA4 6152 + 3884 6151 9568 54 0 1 1365 0 4 309 0 1 384 2 1 148 chain 270655 chr13 114364328 + 48021639 48024942 L1PA7 6471 + 3151 6465 7693 377 0 1 77 1 0 58 1 3 266 12 13 255 0 1 33 0 1 58 10 9 192 7 8 165 0 4 136 0 1 395 2 3 414 3 0 127 1 2 189 0 1 179 0 1 345 chain 24095 chr13 114364328 + 48027320 48027591 AluY 311 + 6 277 50652 271 chain 27650 chr13 114364328 + 48033758 48034191 L1PB2 3958 + 3307 3732 45395 54 1 0 16 6 1 60 2 0 18 2 0 13 4 5 23 1 5 34 5 4 77 1 0 64 2 1 50 chain 29393 chr13 114364328 + 48055366 48055758 LTR7 482 + 0 474 42745 86 1 51 87 17 49 201 chain 5658 chr13 114364328 + 48056343 48056412 LTR7 482 + 0 69 82518 69 chain 19898 chr13 114364328 + 48056433 48056703 LTR7 482 + 115 419 56536 43 9 9 57 8 40 82 0 2 71 chain 4226 chr13 114364328 + 48056715 48056764 LTR7 482 + 433 482 89960 49 chain 305797 chr13 114364328 + 48056766 48060624 HERVH-int 3825 + 0 3825 6700 20 1 2 311 2 1 188 23 76 20 1 0 13 45 0 24 4 3 6 1 0 27 7 6 52 1 0 31 59 0 153 0 1 357 1 0 167 0 10 132 4 3 178 39 25 157 0 1 122 10 15 984 0 19 304 0 1 191 0 2 223 chain 2674 chr13 114364328 + 48057543 48057575 HERVH-int 3825 + 514 545 85174 16 1 0 15 chain 203616 chr13 114364328 + 48068328 48071465 MER61-int 3695 + 11 3111 9587 17 7 0 10 1 0 4 11 4 15 4 9 38 1 0 90 39 0 52 1 0 22 1 0 54 5 1 5 3 0 79 13 1 50 7 8 47 1 2 26 8 14 156 3 8 130 2 0 18 3 0 34 40 44 146 1 0 34 0 34 49 0 1 127 1 0 78 3 1 53 9 0 99 5 1 95 0 1 160 9 5 236 0 1 61 0 1 51 0 3 126 1 0 391 3 7 42 9 14 65 64 61 10 5 6 20 86 83 42 31 30 28 chain 6610 chr13 114364328 + 48136707 48136816 L1MA8 2339 + 2009 2117 78943 27 0 1 44 21 19 17 chain 12441 chr13 114364328 + 48186298 48186633 L1MB3 1562 + 1248 1553 66076 42 1 0 61 1 0 9 97 73 5 2 0 21 34 33 32 1 0 29 chain 491120 chr13 114364328 + 48200815 48206953 L1PA6 6164 + 55 6101 3393 259 79 53 77 24 5 117 22 0 3 54 0 56 0 1 161 0 17 492 0 3 135 0 1 433 8 9 276 0 1 179 0 1 63 0 4 156 6 0 367 0 1 249 5 6 262 9 10 251 2 0 359 0 1 299 0 4 21 8 9 911 2 1 793 chain 3128 chr13 114364328 + 48209808 48209931 MIR 256 + 10 145 98556 35 72 84 16 chain 116312 chr13 114364328 + 48215772 48217498 THE1C-int 1605 + 0 1592 16168 14 11 10 158 2 3 28 0 4 129 0 3 95 9 37 14 8 13 184 4 5 608 174 1 32 4 3 247 1 0 4 chain 29304 chr13 114364328 + 48217506 48217868 THE1C 375 + 2 364 42885 183 1 2 163 1 0 14 chain 16624 chr13 114364328 + 48252378 48252625 MER1B 344 + 92 334 60243 138 3 0 32 24 23 44 1 0 5 chain 4848 chr13 114364328 + 48297678 48297775 MER45A 178 + 69 168 86442 48 28 30 21 chain 235214 chr13 114364328 + 48349404 48355258 L1MA1 4479 + 754 4188 8593 26 0 10 38 0 1 286 0 1 19 1 0 101 1 0 47 1 0 5 7 12 149 3 0 94 2 0 45 0 8 57 0 13 81 0 2 57 0 1 51 0 3 49 0 2 33 2445 0 16 0 1 83 0 7 4 0 1 32 3 4 20 4 7 42 4 0 24 0 4 216 0 2 194 1 0 65 2 1 79 4 8 10 8 6 33 1 0 44 0 1 24 1 0 85 1 0 27 16 14 55 0 4 99 2 0 21 4 0 73 1 0 12 16 11 116 18 11 118 3 1 63 10 25 107 0 1 4 2 0 35 6 5 66 1 0 19 2 0 14 1 0 11 0 1 74 2 1 6 3 0 126 1 0 9 0 1 19 2 0 35 1 0 9 1 0 5 5 3 13 7 0 16 chain 304207 chr13 114364328 + 48393954 48397649 L1PA7 6471 + 0 6466 6736 407 10 11 227 0 7 495 0 1 281 0 20 177 1 0 62 6 5 354 0 2739 67 9 10 755 1 3 378 0 1 203 0 1 262 chain 519713 chr13 114364328 + 48416153 48422515 L1PA7 6471 + 19 6460 2286 251 19 19 119 1 0 4 7 6 290 0 19 129 20 12 578 0 44 186 0 8 147 4 1 557 5 0 190 2 6 9 0 1 5 1 0 32 5 0 74 0 1 393 0 2 510 1 0 316 2 0 6 0 2 82 0 1 64 1 2 689 0 3 10 2 0 18 0 1 173 0 2 204 8 23 10 1 3 399 2 1 214 0 1 476 12 14 134 chain 14738 chr13 114364328 + 48429282 48429466 7SLRNA 320 + 14 201 62619 73 0 3 111 chain 563201 chr13 114364328 + 48465555 48471566 L1HS 6032 + 11 6025 127 3050 1 0 2121 0 4 839 chain 15320 chr13 114364328 + 48540728 48540948 MER4B 649 + 0 244 61883 62 10 11 123 3 26 22 chain 6362 chr13 114364328 + 48540948 48541021 MER57B1 401 + 0 73 79804 73 chain 17072 chr13 114364328 + 48541046 48541243 L1PA7 6471 + 6110 6307 59732 197 chain 12106 chr13 114364328 + 48541245 48541404 L1PA7 6471 + 6308 6468 66651 5 0 1 154 chain 4822 chr13 114364328 + 48584391 48584467 MADE1 96 + 5 96 86591 23 1 17 27 1 0 24 chain 35213 chr13 114364328 + 48594935 48595379 LTR7 482 + 0 473 37887 101 16 15 116 0 31 111 1 0 99 chain 42009 chr13 114364328 + 48619100 48619648 MER61E 571 + 0 562 33353 82 0 13 308 23 23 104 0 1 31 chain 40424 chr13 114364328 + 48625993 48626481 LTR15 485 + 0 484 34365 435 4 0 49 chain 486190 chr13 114364328 + 48696535 48702404 L1PA5 6144 + 0 6129 3510 121 0 14 18 3 15 170 21 0 831 9 0 304 3 0 1347 0 3 146 0 1 193 0 1 5 2 1 797 1 4 239 0 10 82 0 1 205 0 23 43 0 1 445 131 354 472 1 2 153 0 1 127 chain 20646 chr13 114364328 + 48725518 48725919 L1PB1 5432 + 5047 5420 55564 5 1 0 51 1 0 20 0 1 14 1 0 9 16 11 9 2 0 52 3 2 16 1 0 44 1 0 15 63 50 24 1 0 21 1 0 13 1 0 16 chain 4242 chr13 114364328 + 48752098 48752149 MADE1 96 + 45 96 89863 51 chain 24337 chr13 114364328 + 48754752 48755111 THE1B 368 + 0 368 50268 192 20 22 14 7 15 63 7 6 56 chain 126642 chr13 114364328 + 48755111 48756671 THE1B-int 1605 + 0 1598 14460 430 1 26 47 1 2 108 3 15 208 5 6 206 1 0 550 chain 23086 chr13 114364328 + 48756685 48757038 THE1B 368 + 7 368 52230 162 1 0 21 43 53 63 4 3 59 chain 59219 chr13 114364328 + 48850970 48851718 MER4E1 777 + 0 766 26600 24 0 1 310 0 1 169 7 27 11 19 15 208 chain 34791 chr13 114364328 + 48880344 48880778 MER57A1 433 + 0 433 38168 80 0 5 11 7 0 193 0 1 143 chain 5350 chr13 114364328 + 48930131 48930212 MADE1 96 + 0 96 83953 29 1 17 26 1 0 24 chain 8697 chr13 114364328 + 48987916 48988017 U6 107 + 6 107 73220 101 chain 25448 chr13 114364328 + 48988017 48988334 L1P3 4156 + 2669 2989 48556 194 1 0 20 0 4 102 chain 86027 chr13 114364328 + 49001070 49002138 MER11B 1079 + 0 1074 20432 220 0 5 34 3 0 104 0 3 326 0 1 79 8 2 127 1 0 15 1 2 24 0 5 106 1 2 19 chain 8790 chr13 114364328 + 49067523 49067651 MER85 139 + 0 139 73011 96 13 24 19 chain 13588 chr13 114364328 + 49077580 49077794 L1PA8 5853 + 5643 5853 64185 36 1 0 7 15 14 40 2 1 15 5 4 93 chain 7589 chr13 114364328 + 49095391 49095489 HY3 101 + 1 99 75889 61 1 0 6 0 1 30 chain 519619 chr13 114364328 + 49118191 49124496 L1PA7 6471 + 134 6470 2292 265 5 6 204 0 1 411 0 1 144 0 1 61 5 10 142 0 13 1239 4 0 74 0 1 152 9 5 25 0 4 591 5 4 15 1 0 243 1 0 320 1 0 186 5 7 200 0 1 494 0 1 460 1 2 71 3 0 134 1 2 95 0 3 101 0 1 169 4 8 448 4 9 12 chain 24817 chr13 114364328 + 49176345 49176631 L1PA7 6471 + 6173 6459 49563 286 chain 33312 chr13 114364328 + 49244389 49244836 MER4A1 472 + 0 472 39247 90 0 1 10 0 1 123 2 23 143 21 23 58 chain 4447 chr13 114364328 + 49329478 49329531 MER21B 843 + 382 435 88623 53 chain 45897 chr13 114364328 + 49338149 49338656 L1PA3long 6157 + 5645 6152 31108 507 chain 4728 chr13 114364328 + 49341670 49341727 L1MA4 2864 + 2746 2804 87085 21 0 1 36 chain 103775 chr13 114364328 + 49363863 49365523 L1MA2 4263 + 473 3487 17841 10 1 0 3 3 0 16 1 0 95 15 8 216 152 1522 21 0 9 208 1 0 63 3 1 52 5 0 14 6 5 24 5 4 164 2 3 117 2 0 130 2 0 16 17 19 99 1 7 8 8 0 180 chain 3672 chr13 114364328 + 49364321 49364365 L1MA2 4263 + 770 814 93793 44 chain 23679 chr13 114364328 + 49375522 49375794 L1PA5 6144 + 5860 6132 51308 272 chain 161035 chr13 114364328 + 49377429 49379716 SVA_F 1814 + 10 1814 11683 206 1 0 179 0 39 452 1 0 27 98 0 35 431 14 39 1 0 4 1 0 172 1 0 4 1 0 623 1 0 10 chain 3041 chr13 114364328 + 49378305 49378345 SVA_F 1814 + 1032 1105 59595 13 13 46 14 chain 4041 chr13 114364328 + 49378345 49378393 SVA_F 1814 + 914 977 41518 33 4 19 11 chain 23571 chr13 114364328 + 49378428 49378708 SVA_F 1814 + 1012 1291 41518 19 0 1 106 2 1 135 1 0 17 chain 11581 chr13 114364328 + 49378730 49378859 SVA_F 1814 + 962 1089 58111 39 1 0 4 1 0 84 chain 21380 chr13 114364328 + 49405795 49406146 L1MA3 4352 + 3865 4200 54661 204 68 52 79 chain 56200 chr13 114364328 + 49504472 49505078 SVA_D 2077 + 1094 1926 27511 125 0 226 481 chain 101495 chr13 114364328 + 49565032 49566254 SVA_F 1814 + 0 1788 18128 149 11 0 328 0 40 75 0 37 119 0 496 105 1 0 5 0 1 74 1 3 86 0 2 268 chain 35062 chr13 114364328 + 49575134 49575669 L1PA16 3655 + 2972 3520 37978 116 38 40 76 1 0 74 17 12 128 7 24 78 chain 166648 chr13 114364328 + 49592180 49594243 SVA_F 1814 + 11 1814 11297 903 49 0 34 128 15 50 49 0 114 49 0 687 chain 2733 chr13 114364328 + 49593083 49593115 SVA_F 1814 + 1154 1187 78486 22 0 1 10 chain 6200 chr13 114364328 + 49593166 49593245 SVA_F 1814 + 1012 1091 42214 79 chain 1139 chr13 114364328 + 49593245 49593292 SVA_F 1814 + 851 898 78036 4 1 0 25 0 1 17 chain 3846 chr13 114364328 + 49593344 49593393 SVA_F 1814 + 1140 1189 42214 49 chain 2693 chr13 114364328 + 49593525 49593555 SVA_F 1814 + 855 885 102401 30 chain 50543 chr13 114364328 + 49595391 49596022 L1PA8 5853 + 5222 5847 29369 342 1 0 41 7 6 68 1 0 9 1 0 52 2 1 19 2 1 86 chain 77080 chr13 114364328 + 49599021 49599990 LTR5_Hs 974 + 0 974 22295 169 1 0 116 0 1 181 0 1 188 1 0 163 8 15 27 12 10 103 chain 9126 chr13 114364328 + 49637694 49637844 MER67C 710 + 25 173 72294 44 1 2 6 1 0 33 5 4 12 1 0 47 chain 25602 chr13 114364328 + 49666438 49666740 AluYk12 309 + 10 309 48313 53 3 1 240 1 0 5 chain 43030 chr13 114364328 + 49692445 49692997 PABL_A 660 + 76 660 32757 31 1 0 294 9 28 74 1 0 79 0 2 34 1 14 28 chain 17425 chr13 114364328 + 49727629 49727947 HSMAR2 1300 + 24 340 59322 21 4 5 10 0 2 35 9 10 32 24 17 97 15 17 20 1 0 50 chain 145242 chr13 114364328 + 49761201 49762874 SVA_C 1631 + 0 1624 12672 17 10 4 36 1 3 792 44 0 406 1 0 366 chain 2337 chr13 114364328 + 49762074 49762101 SVA_C 1631 + 870 898 63931 9 0 1 18 chain 3545 chr13 114364328 + 49797928 49797969 MLT1A1 405 + 174 215 94906 41 chain 32423 chr13 114364328 + 49842903 49843336 MER4A1 472 + 0 451 40020 140 0 17 237 20 21 36 chain 11828 chr13 114364328 + 49861846 49862024 MER11A 1151 + 0 257 67154 77 8 99 54 12 0 27 chain 27578 chr13 114364328 + 49873990 49874710 LOR1b 457 + 43 457 45480 38 0 8 59 311 0 27 3 0 23 10 9 223 7 8 19 chain 23894 chr13 114364328 + 49874108 49874398 AluY 311 + 8 299 50953 121 1 2 168 chain 466980 chr13 114364328 + 49879802 49885876 L1PA8 5853 + 108 5853 3929 194 22 26 4 1 0 106 7 0 10 0 7 467 13 1 43 319 0 257 0 1 794 13 0 13 1 2 1061 0 3 565 0 2 127 0 13 563 1 2 289 0 16 102 0 6 230 3 0 70 1 3 430 0 7 40 1 0 47 2 0 69 2 1 14 49 0 43 0 17 7 1 0 93 chain 29559 chr13 114364328 + 49889726 49890287 Tigger3b 1229 + 279 865 42540 11 2 1 25 5 20 42 11 12 148 1 0 16 1 0 14 4 6 8 0 4 36 3 7 55 15 5 14 0 9 53 70 73 27 chain 20737 chr13 114364328 + 49908750 49909092 Tigger3b 1229 + 304 661 55445 15 0 3 5 9 6 45 32 33 143 1 0 15 0 3 7 8 16 21 0 4 41 chain 26377 chr13 114364328 + 49921049 49921407 THE1C 375 + 0 360 47154 68 3 4 108 0 1 4 13 13 162 chain 120256 chr13 114364328 + 49948075 49950095 L1PB1 5432 + 3457 5357 15492 85 6 11 35 0 17 48 0 5 70 12 15 113 5 9 59 1 3 164 1 0 23 305 0 380 29 32 106 4 0 13 1 182 271 1 5 11 5 0 20 1 0 12 1 0 10 7 3 9 2 0 52 2 1 16 1 0 34 11 9 16 2 0 6 16 6 18 3 1 5 1 0 14 2 0 11 chain 9218 chr13 114364328 + 50101324 50101525 Tigger4a 237 + 0 237 72088 25 0 8 44 61 99 8 10 0 53 chain 4731 chr13 114364328 + 50117691 50117745 L1MB2 1706 + 1637 1691 87074 54 chain 155058 chr13 114364328 + 50165354 50167107 L1PA6 6164 + 4406 6162 12052 242 0 1 156 0 1 1020 0 1 335 chain 3434 chr13 114364328 + 50212102 50212139 MER4E1 777 + 663 700 95794 37 chain 4676 chr13 114364328 + 50230694 50230751 MER5B 177 + 50 107 87400 57 chain 24378 chr13 114364328 + 50232727 50233060 THE1A 353 + 0 342 50202 84 2 1 24 4 13 80 1 0 113 1 3 24 chain 127440 chr13 114364328 + 50233079 50234647 THE1A-int 1579 + 0 1579 14362 113 0 3 386 22 18 29 5 8 326 0 3 104 1 0 79 6 13 497 chain 26985 chr13 114364328 + 50234647 50235311 THE1A 353 + 0 353 46291 106 5 4 88 1 0 28 309 0 127 chain 93756 chr13 114364328 + 50256367 50257438 L1PA6 6164 + 5090 6161 19073 1071 chain 17418 chr13 114364328 + 50329471 50329783 THE1D 372 + 57 361 59329 18 19 0 91 0 6 6 56 61 122 chain 19035 chr13 114364328 + 50343415 50343647 L1PA6 6164 + 5924 6156 57514 232 chain 121931 chr13 114364328 + 50396411 50397833 LTR12C 1709 + 0 1709 15200 491 0 6 153 0 278 184 1 0 4 4 2 29 0 1 69 7 11 178 0 2 153 1 0 148 chain 32711 chr13 114364328 + 50432526 50432912 L1PA7 6471 + 6081 6467 39750 386 chain 94520 chr13 114364328 + 50472586 50473649 L1PA4 6152 + 5078 6136 18962 21 0 1 136 6 0 900 chain 159715 chr13 114364328 + 50545817 50547560 L1PA4 6152 + 4226 5969 11768 1743 chain 79954 chr13 114364328 + 50555412 50556281 L1PA3long 6157 + 5288 6157 21635 869 chain 42079 chr13 114364328 + 50720920 50721464 MLT2A2 560 + 0 560 33305 70 1 3 166 1 0 160 3 14 111 0 4 32 chain 4767 chr13 114364328 + 50803465 50803529 MER33 330 + 6 69 86875 59 1 0 4 chain 8558 chr13 114364328 + 50829064 50829189 MER30 238 + 127 238 73544 8 17 0 62 0 3 38 chain 196705 chr13 114364328 + 50832886 50835191 L1PA7 6471 + 4146 6467 9823 34 0 1 482 0 8 313 0 1 438 1 0 107 0 1 90 0 3 79 5 0 472 7 6 251 0 9 26 chain 18582 chr13 114364328 + 50850607 50850861 L1MA4 2864 + 2235 2485 58017 39 0 1 4 1 0 23 1 0 32 9 6 145 chain 341960 chr13 114364328 + 50856883 50861485 L1PA11 4918 + 8 4578 6022 6 1 0 28 2 0 37 3 0 33 4 3 13 2 0 15 0 1 36 1 0 33 2 0 5 2 1 206 0 1 29 24 14 7 0 3 936 10 7 181 8 12 196 2 3 113 0 9 11 19 5 139 0 1 455 1 0 262 18 14 34 10 14 160 0 2 16 34 35 30 0 1 120 5 20 253 0 1 4 3 2 128 0 1 22 2 0 227 0 1 79 0 1 186 0 1 7 14 0 159 1 0 66 2 1 10 0 3 58 17 15 8 1 0 20 4 0 9 31 22 15 1 0 13 2 0 11 chain 39843 chr13 114364328 + 50894280 50894814 MER50 708 + 142 685 34777 223 2 1 11 18 26 78 1 0 188 0 3 13 chain 18569 chr13 114364328 + 50944369 50944618 L1PA8 5853 + 5608 5853 58026 79 2 0 53 2 1 19 1 0 93 chain 8112 chr13 114364328 + 50980448 50980545 THE1C 375 + 212 309 74613 97 chain 546374 chr13 114364328 + 50982054 50988070 L1PA2 6032 + 0 6027 947 72 1 2 183 1 0 661 1 0 1532 1 0 1212 10 1 1163 0 18 1022 1 6 6 5 0 96 0 4 49 chain 22813 chr13 114364328 + 51030233 51030521 AluSc8 310 + 2 300 52639 44 0 1 79 1 3 144 0 7 20 chain 163363 chr13 114364328 + 51077119 51078923 SVA_D 2077 + 4 2077 11525 913 0 137 32 0 128 174 0 1 65 0 1 330 0 3 271 1 0 18 chain 24101 chr13 114364328 + 51089341 51089693 THE1D 372 + 0 355 50643 160 0 1 8 22 25 138 12 11 12 chain 2562 chr13 114364328 + 51093391 51093498 MER3 215 - 5 54 103322 26 67 9 14 chain 39938 chr13 114364328 + 51127810 51128333 MER41A 554 + 0 533 34708 87 8 9 203 0 7 123 5 6 40 5 6 52 chain 49046 chr13 114364328 + 51128735 51129306 LTR22 571 + 0 571 29934 571 chain 95266 chr13 114364328 + 51131070 51132678 MER41-int 2638 + 1305 2621 18874 15 2 1 6 1 0 51 1 8 114 0 1 5 8 26 20 0 1 35 1 0 80 1 0 91 32 0 86 0 5 23 3 0 38 2 0 95 1 0 97 1 0 249 0 3 21 298 0 75 1 2 37 1 5 29 3 15 41 3 0 41 chain 45047 chr13 114364328 + 51132702 51133258 MER41A 554 + 0 554 31554 196 2 0 358 chain 41806 chr13 114364328 + 51139433 51139969 MER41A 554 + 0 533 33485 86 9 10 172 4 0 265 chain 190218 chr13 114364328 + 51142987 51145544 MER4-int 2692 + 78 2686 10103 20 3 1 6 1 0 13 3 1 82 2 1 337 0 9 33 10 25 111 0 2 43 0 4 176 1 0 163 0 2 46 2 1 24 2 1 207 5 21 23 5 4 31 2 3 5 0 1 98 0 1 179 1 3 136 2 0 32 5 6 139 0 1 36 0 1 35 5 6 40 2 0 84 2 0 3 1 0 7 0 5 176 5 0 24 4 7 74 1 11 103 2 0 5 chain 11376 chr13 114364328 + 51166227 51166349 L1PA2 6032 + 5654 5776 67957 122 chain 23002 chr13 114364328 + 51166350 51166604 L1PA2 6032 + 5776 6032 52354 240 0 2 14 chain 16403 chr13 114364328 + 51169067 51169316 MSTA-int 1630 + 0 248 60514 33 1 2 34 25 23 156 chain 40245 chr13 114364328 + 51169865 51170314 LTR7 482 + 0 482 34481 249 1 32 101 0 2 98 chain 260567 chr13 114364328 + 51170316 51173413 HERVH-int 3825 + 0 3120 7953 350 1 0 135 2 0 15 44 38 32 1 0 10 1 0 19 1 0 5 28 0 15 0 37 41 1 0 65 0 3 7 0 8 449 15 0 456 4 31 517 0 4 883 chain 41470 chr13 114364328 + 51174555 51175006 LTR7 482 + 0 482 33694 264 0 31 187 chain 4108 chr13 114364328 + 51194131 51194176 MADE1 96 + 0 45 90714 45 chain 5765 chr13 114364328 + 51204794 51204872 MSTB1 431 + 334 412 82060 66 1 0 4 0 1 7 chain 45072 chr13 114364328 + 51304538 51305091 MER41A 554 + 0 554 31544 430 0 1 123 chain 20580 chr13 114364328 + 51399945 51400254 MER1B 344 + 37 344 55668 15 1 0 158 2 0 10 4 0 42 30 35 47 chain 17251 chr13 114364328 + 51406788 51407019 MER30 238 + 0 238 59524 107 4 15 73 4 0 43 chain 26264 chr13 114364328 + 51415348 51415709 THE1B 368 + 0 356 47328 76 9 8 88 6 4 24 2 0 156 chain 11257 chr13 114364328 + 51469907 51470045 7SLRNA 320 + 159 297 68155 138 chain 480261 chr13 114364328 + 51526823 51532513 L1PA6 6164 + 428 6162 3630 21 8 0 120 1 0 230 1 18 674 5 6 310 0 2 6 0 1 138 0 14 148 0 3 212 1 2 377 0 3 320 0 1 156 0 2 504 1 0 72 11 13 6 0 1 703 1 0 809 0 1 14 0 1 78 0 2 117 0 1 317 0 1 171 6 7 152 chain 535668 chr13 114364328 + 51567035 51573483 L1PA4 6152 + 10 6148 1585 423 1 0 610 0 2 802 0 5 1247 0 1 986 0 2 263 0 4 133 0 2 139 325 0 915 1 0 494 0 1 109 chain 4486 chr13 114364328 + 51637021 51637076 MER5A1 166 + 102 157 88418 55 chain 4445 chr13 114364328 + 51689897 51689946 Charlie1b 519 + 74 123 88631 49 chain 260044 chr13 114364328 + 51709500 51712453 L1PA5 6144 + 3196 6144 7969 486 2 0 1594 1 0 160 0 1 284 7 0 301 0 4 118 chain 28625 chr13 114364328 + 51716410 51716712 AluYa5 310 + 0 301 43911 132 1 0 169 chain 6206 chr13 114364328 + 51828840 51828941 MER45B 1037 + 335 436 80337 16 1 0 13 10 11 61 chain 7315 chr13 114364328 + 51890654 51890745 LTR54B 464 + 0 91 76620 91 chain 40454 chr13 114364328 + 51931116 51931645 L1PA7 6471 + 5964 6467 34343 46 0 1 72 0 4 60 32 0 291 0 1 28 chain 543662 chr13 114364328 + 51982627 51989067 L1PA7 6471 + 2 6466 1098 105 0 10 698 4 7 228 0 1 43 0 2 318 1 0 81 2 1 251 0 1 345 1 0 209 1 0 338 3 4 43 0 1 545 0 4 260 1 0 640 3 0 528 0 8 71 9 8 443 0 4 124 0 1 374 0 2 758 5 0 8 chain 32956 chr13 114364328 + 52005818 52006216 MER9a2 513 + 0 402 39544 200 0 3 113 1 2 84 chain 24364 chr13 114364328 + 52015472 52015814 THE1A 353 + 0 341 50227 110 2 1 35 0 1 17 1 0 29 6 5 62 2 3 78 chain 127996 chr13 114364328 + 52015828 52017400 THE1A-int 1579 + 1 1573 14277 169 1 0 5 0 1 78 0 1 179 1 0 4 0 1 137 1 0 235 3 4 457 1 0 301 chain 26820 chr13 114364328 + 52017405 52017761 THE1A 353 + 0 353 46511 111 1 0 91 1 0 7 3 2 142 chain 29798 chr13 114364328 + 52043894 52044316 MLT2A1 477 + 0 467 42234 170 4 1 8 0 1 24 0 1 90 5 6 66 0 1 17 11 55 27 chain 43360 chr13 114364328 + 52051657 52052323 MER4A 717 + 0 711 32533 41 9 15 198 0 7 9 0 5 29 0 1 14 0 3 48 0 40 82 67 45 148 0 4 15 0 1 6 chain 496546 chr13 114364328 + 52054508 52059964 L1PA3long 6157 + 573 6157 3247 208 0 128 914 0 1 137 0 1 371 0 1 1506 3 0 2317 chain 174964 chr13 114364328 + 52063028 52065138 SVA_D 2077 + 6 2077 10838 13 25 9 514 0 40 335 0 37 80 2 0 149 49 0 165 46 0 40 0 1 4 10 8 670 2 0 6 chain 2295 chr13 114364328 + 52064149 52064195 SVA_D 2077 + 1008 1056 38688 28 0 2 18 chain 2409 chr13 114364328 + 52064360 52064403 SVA_D 2077 + 1094 1137 64238 9 1 0 29 0 1 4 chain 11540 chr13 114364328 + 52067291 52067451 MER61E 571 + 0 165 67685 21 1 2 31 0 3 69 2 3 36 chain 24796 chr13 114364328 + 52070377 52070732 THE1B 368 + 0 368 49593 22 0 1 21 5 20 10 10 11 87 1 0 23 2 0 98 1 0 75 chain 90258 chr13 114364328 + 52079320 52080388 SVA_D 2077 + 55 1335 19636 487 0 40 248 40 0 87 0 37 39 2 0 2 0 177 8 0 1 32 2 0 104 0 1 17 chain 47416 chr13 114364328 + 52080388 52080906 SVA_D 2077 + 1559 2077 25858 518 chain 22806 chr13 114364328 + 52082874 52083161 AluSc 308 + 8 293 52652 182 0 1 89 3 0 13 chain 45923 chr13 114364328 + 52107611 52108171 PABL_A 660 + 91 653 31094 109 8 7 230 1 2 119 0 1 51 0 1 42 chain 3650 chr13 114364328 + 52206346 52206503 MER58B 340 + 139 304 94028 32 7 13 12 82 84 24 chain 213718 chr13 114364328 + 52214986 52217522 L1PA7 6471 + 2724 5261 9210 91 1 0 580 0 1 101 0 1 1763 chain 317323 chr13 114364328 + 52254320 52258039 L1P1 4361 + 1 3720 6464 573 1 0 128 12 5 151 0 8 312 0 3 62 9 8 919 1 2 1543 3 0 5 chain 131457 chr13 114364328 + 52264092 52265716 L1PA8 5853 + 4211 5847 13875 158 0 1 623 0 1 13 0 2 228 7 8 243 2 0 120 2 0 37 0 4 19 3 12 60 5 4 16 16 15 72 chain 18935 chr13 114364328 + 52282464 52282667 L1PA2 6032 + 5826 6029 57611 203 chain 4927 chr13 114364328 + 52341570 52341630 L1PA11 4918 + 113 171 86017 15 2 0 43 chain 31825 chr13 114364328 + 52341638 52342072 L1PA11 4918 + 4081 4502 40475 247 6 0 65 2 1 13 3 0 67 2 0 15 1 0 13 chain 7568 chr13 114364328 + 52400003 52400093 HY4 93 + 0 90 75933 90 chain 24286 chr13 114364328 + 52422834 52423195 THE1B 368 + 0 368 50353 15 2 0 25 0 5 19 8 9 99 10 10 13 1 3 96 1 0 5 0 2 67 chain 21024 chr13 114364328 + 52426610 52426855 AluSc8 310 + 20 285 55088 11 0 17 84 0 3 150 chain 7208 chr13 114364328 + 52451086 52451222 L1MA3 4352 + 4221 4351 76918 38 2 0 23 8 6 19 8 7 14 1 0 23 chain 21280 chr13 114364328 + 52522847 52523104 AluSg7 307 + 32 289 54791 99 0 1 57 1 0 100 chain 15789 chr13 114364328 + 52525756 52525987 L1MA2 4263 + 486 726 61298 7 2 0 38 10 21 174 chain 69409 chr13 114364328 + 52537996 52538993 L1PA11 4918 + 3499 4517 24138 31 3 0 136 1 0 101 5 0 183 4 5 93 9 9 69 1 0 4 4 5 57 0 44 94 5 0 63 2 1 13 5 0 40 0 1 26 2 0 14 1 0 19 2 0 10 chain 18766 chr13 114364328 + 52544947 52545147 L1PA2 6032 + 5832 6032 57824 200 chain 60108 chr13 114364328 + 52557809 52558508 L1P1 4361 + 565 1266 26341 472 0 2 227 chain 189645 chr13 114364328 + 52558526 52560669 L1PA5 6144 + 4021 6144 10136 771 10 2 54 0 1 56 13 0 1239 chain 10249 chr13 114364328 + 52586328 52586452 MER85 139 + 2 136 69899 87 0 10 37 chain 87048 chr13 114364328 + 52591454 52592558 L1PA7 6471 + 5276 6372 20225 197 0 5 121 18 4 17 4 5 747 chain 66809 chr13 114364328 + 52613300 52614268 L1MA1 4479 + 3212 4157 24743 39 1 0 12 5 0 120 0 5 7 8 0 123 4 0 197 0 1 5 1 0 18 2 0 87 1 0 20 2 0 13 1 0 21 1 7 60 1 0 5 3 0 78 2 1 47 3 2 27 2 0 35 2 1 8 1 0 6 chain 47793 chr13 114364328 + 52614269 52614786 L1PA3long 6157 + 5627 6144 30365 517 chain 5109 chr13 114364328 + 52624657 52624739 MER2 342 + 131 214 85111 37 4 6 36 1 0 4 chain 21245 chr13 114364328 + 52791027 52791300 AluSc 308 + 23 292 54826 19 0 1 239 5 0 10 chain 119179 chr13 114364328 + 52817495 52818852 SVA_B 1603 + 44 1600 15659 706 0 204 640 5 0 6 chain 5603 chr13 114364328 + 52826730 52826808 LTR12C 1709 + 777 1055 82796 20 0 200 58 chain 8041 chr13 114364328 + 52836308 52836421 MER41B 635 + 513 628 74779 47 5 6 56 0 1 5 chain 6881 chr13 114364328 + 52900200 52900298 MER5A1 166 + 29 124 78023 81 6 3 11 chain 5718 chr13 114364328 + 52914238 52914300 MLT1D 503 + 55 117 82264 62 chain 2844 chr13 114364328 + 52952572 52952620 MER77B 728 + 606 665 101281 31 6 17 11 chain 49377 chr13 114364328 + 52953878 52954521 L1PA8 5853 + 5210 5847 29808 354 1 0 44 2 0 41 9 10 19 2 1 7 1 0 54 2 1 19 1 0 87 chain 16083 chr13 114364328 + 53000135 53000432 THE1B 368 + 0 302 60912 107 34 35 27 1 0 6 17 19 6 0 5 4 1 0 4 0 1 16 1 0 12 2 1 59 chain 36619 chr13 114364328 + 53175272 53175825 LTR12_ 688 + 0 673 37004 25 1 0 96 0 25 21 1 0 14 41 0 67 2 1 90 0 4 35 20 21 87 0 134 53 chain 24088 chr13 114364328 + 53247542 53247909 THE1B 368 + 0 368 50665 15 3 1 24 0 5 14 23 24 89 3 2 14 6 4 176 chain 132087 chr13 114364328 + 53296885 53298385 L1PA4 6152 + 4650 6152 13822 95 3 0 556 1 0 503 1 3 5 1 0 329 0 5 6 chain 43866 chr13 114364328 + 53326001 53326487 L1PA3long 6157 + 5670 6156 32211 486 chain 3402 chr13 114364328 + 53399726 53399775 MER20 218 + 44 90 96047 39 3 0 7 chain 25169 chr13 114364328 + 53438176 53438447 L1PA2 6032 + 4787 5058 49005 271 chain 29190 chr13 114364328 + 53496268 53496594 L1PA4 6152 + 5825 6151 43064 326 chain 8728 chr13 114364328 + 53540672 53540922 L1PA11 4918 + 4413 4629 73153 45 2 0 17 2 0 13 1 0 20 4 0 9 8 3 10 13 9 15 1 0 9 63 48 18 chain 36457 chr13 114364328 + 53586899 53587387 L1PA8 5853 + 5372 5853 37099 190 1 0 46 2 0 69 26 24 39 2 1 19 1 0 93 chain 58185 chr13 114364328 + 53593406 53594189 LTR12 884 + 0 884 26910 169 37 0 27 1 26 31 1 116 12 2 0 2 1 0 61 0 1 439 chain 2584 chr13 114364328 + 53593582 53593612 LTR12 884 + 32 62 75281 30 chain 118323 chr13 114364328 + 53599080 53600383 L1PA3long 6157 + 4857 6157 15829 114 4 0 1043 0 1 142 chain 4493 chr13 114364328 + 53604620 53604686 MLT2B4 540 + 429 488 88372 7 7 0 52 chain 137690 chr13 114364328 + 53619372 53621468 L1PA5 6144 + 4036 6144 13285 347 0 8 655 4 8 566 6 6 518 chain 4327 chr13 114364328 + 53874754 53874883 MER20 218 + 43 172 89306 15 51 56 43 6 1 14 chain 161100 chr13 114364328 + 53897875 53899689 L1PA5 6144 + 4316 6140 11675 978 0 5 343 0 1 348 1 5 144 chain 51640 chr13 114364328 + 53924653 53925471 L1PB 1623 + 790 1576 28987 154 0 8 83 0 2 140 1 2 128 9 0 139 1 0 7 133 100 23 chain 5634 chr13 114364328 + 53986455 53986538 MADE1 96 + 0 96 82632 37 1 17 33 3 0 9 chain 8279 chr13 114364328 + 53989782 53989872 L1PA7 6471 + 6368 6458 74217 90 chain 116242 chr13 114364328 + 54008490 54009825 L1PA5 6144 + 4768 6136 16178 597 10 12 55 0 2 433 0 1 216 0 28 24 chain 49009 chr13 114364328 + 54038963 54039521 L1PA5 6144 + 5583 6141 29950 558 chain 460910 chr13 114364328 + 54043857 54049966 L1PA3long 6157 + 19 6149 4104 96 0 1 4 7 6 14 231 244 30 62 54 51 27 28 158 7 14 31 73 91 124 25 0 15 2 3 195 94 85 710 4 0 16 0 1 336 19 2 51 2 0 302 0 34 235 0 1 218 0 9 467 0 1 2503 chain 41282 chr13 114364328 + 54057055 54057530 L1PA3long 6157 + 5676 6143 33799 409 9 1 57 chain 5591 chr13 114364328 + 54166833 54166946 MER58A 224 + 43 153 82845 49 4 0 6 27 28 27 chain 508297 chr13 114364328 + 54218991 54225025 L1PA5 6144 + 0 6139 2832 134 12 26 101 0 20 418 7 6 113 0 29 228 1 4 82 17 8 77 1 0 59 6 24 1028 0 1 6 0 1 575 0 14 216 1 0 81 1 3 253 1 2 173 1 0 219 0 3 331 9 7 94 0 8 287 0 5 658 6 5 483 0 2 355 chain 25376 chr13 114364328 + 54248051 54248341 L1PA5 6144 + 5789 6132 48657 109 0 53 181 chain 33641 chr13 114364328 + 54268141 54268518 LTR7 482 + 0 410 38970 264 0 31 25 0 2 88 chain 192026 chr13 114364328 + 54268524 54270743 HERVH-int 3825 + 1210 3667 10024 422 0 1 52 4 31 1404 8 218 329 chain 241771 chr13 114364328 + 54304566 54307844 L1PBa1 4058 + 10 3368 8431 26 1 0 8 16 13 345 30 37 167 0 1 7 15 14 17 1 2 452 5 4 102 7 8 227 0 1 5 25 25 131 2 0 123 2 7 331 0 5 339 9 34 26 3 0 241 34 53 386 0 8 157 1 19 37 chain 10816 chr13 114364328 + 54307851 54308032 L1PB1 5432 + 5158 5323 68825 9 2 0 70 1 0 44 1 0 15 25 13 14 chain 12091 chr13 114364328 + 54313361 54313622 LTR12D 1347 + 568 752 66686 125 102 25 34 chain 23450 chr13 114364328 + 54371164 54371742 L1PB3 3668 + 1592 2166 51676 58 1 2 8 1 0 78 0 3 81 1 2 72 244 236 34 chain 388986 chr13 114364328 + 54408503 54413963 L1PB1 5432 + 40 5420 5333 26 66 54 127 1 0 103 0 1 4 1 0 46 3 0 5 25 2 114 0 1 59 6 10 17 1 0 173 4 5 310 0 1 305 8 0 204 0 1 32 1 0 5 0 1 245 0 10 239 1 2 217 4 5 136 2 0 245 0 12 85 1 0 241 0 1 554 1 0 10 16 17 67 8 0 174 0 1 77 21 22 204 0 1 180 0 1 234 2 0 17 18 19 83 14 19 48 0 2 289 25 0 11 7 0 24 1 0 7 21 16 6 2 0 52 1 0 18 1 0 44 1 0 15 6 3 12 9 0 12 29 24 23 1 0 21 1 0 13 1 0 9 1 0 7 chain 97874 chr13 114364328 + 54491038 54492345 L1PB1 5432 + 3738 5103 18538 315 10 11 565 6 0 50 0 2 108 6 14 18 0 39 90 1 0 95 0 15 43 chain 6986 chr13 114364328 + 54492429 54492550 L1PB1 5432 + 5108 5220 77649 8 1 0 22 1 0 8 2 1 11 5 1 9 2 0 52 chain 3586 chr13 114364328 + 54492566 54492610 L1PB1 5432 + 5237 5281 94538 44 chain 5455 chr13 114364328 + 54492691 54492770 L1PB1 5432 + 5346 5422 83429 24 1 0 21 1 0 13 1 0 18 chain 25800 chr13 114364328 + 54556541 54556976 L1PA14 3548 + 3033 3453 48012 19 1 2 60 4 0 17 2 0 6 1 0 16 1 2 66 1 0 16 11 12 86 1 0 6 8 4 28 10 9 8 2 0 8 1 0 16 1 0 39 chain 77479 chr13 114364328 + 54572234 54573121 L1HS 6032 + 1 882 22199 140 19 15 98 4 2 626 chain 5429 chr13 114364328 + 54593399 54593464 L1PA15 4387 + 2314 2379 83564 65 chain 19530 chr13 114364328 + 54594530 54594791 L1PA8 5853 + 5595 5852 56983 16 2 0 71 1 0 18 0 1 39 2 1 19 1 0 92 chain 186040 chr13 114364328 + 54601196 54603557 L1PA7 6471 + 4190 6467 10293 67 0 1 128 0 1 568 6 5 383 0 2 208 130 0 7 1 39 22 1 0 102 0 7 406 0 1 322 2 0 8 chain 29419 chr13 114364328 + 54772350 54772707 L1PA8 5853 + 4867 5222 42710 143 5 3 209 chain 332742 chr13 114364328 + 54822342 54826518 L1PA7 6471 + 1007 6466 6172 114 0 2 75 7 8 4 1 0 356 1 7 98 0 1266 27 0 2 564 1 0 4 0 1 306 1 2 326 2 0 104 1 0 74 0 1 424 0 3 22 0 1 161 2 1 30 1 2 610 0 1 11 0 3 162 2 1 393 1 0 134 14 16 143 chain 169923 chr13 114364328 + 54856026 54857936 L1P1 4361 + 2393 4319 11107 93 0 10 697 0 2 90 0 1 662 0 2 204 1 0 22 1 4 125 1 0 14 chain 24894 chr13 114364328 + 54858253 54858631 THE1D 372 + 0 372 49446 166 27 28 46 6 0 98 5 4 30 chain 29181 chr13 114364328 + 54876518 54876909 MLT2A1 477 + 4 397 43083 59 2 0 79 2 3 23 1 5 150 1 0 46 0 4 12 4 0 12 chain 3651 chr13 114364328 + 54898978 54899044 MADE1 96 - 4 91 94019 24 13 34 29 chain 373194 chr13 114364328 + 54917137 54923901 L1PA6 6164 + 0 6156 5599 94 0 1 472 1 0 383 2100 1517 324 2 1 216 0 1 1077 4 1 547 13 1 8 0 1 200 5 8 18 0 1 314 12 11 118 0 5 78 1 0 442 15 0 88 2 0 60 17 16 153 chain 61590 chr13 114364328 + 54938270 54939085 LTR12 884 + 0 884 25962 18 7 6 250 2 69 35 2 0 66 2 1 18 5 4 158 1 0 88 8 16 155 chain 91622 chr13 114364328 + 55009594 55010771 L1P2 5180 + 1730 2905 19388 217 0 2 62 10 11 12 1 0 169 0 2 122 5 1 572 2 0 5 chain 25275 chr13 114364328 + 55019381 55019757 L1PB2 3958 + 3464 3834 48828 81 12 11 61 1 0 61 5 4 66 3 1 25 3 2 58 chain 62622 chr13 114364328 + 55053630 55054414 LTR17 781 + 0 767 25726 119 0 9 151 4 5 15 10 0 21 0 1 5 0 1 40 1 0 39 18 0 361 chain 371601 chr13 114364328 + 55056110 55060633 HERV17-int 4347 + 12 4347 5628 15 1 0 53 1 0 27 7 5 27 1 0 156 5 0 109 15 16 254 0 1 49 0 2 443 0 3 303 3 0 739 0 12 360 1 2 724 0 4 99 0 2 445 203 0 177 0 1 244 0 1 62 chain 5492 chr13 114364328 + 55060092 55060150 HERV17-int 4347 + 3867 3925 82027 58 chain 64943 chr13 114364328 + 55060943 55061742 LTR17 781 + 0 781 25202 119 0 9 180 10 0 19 0 1 39 1 0 52 19 1 353 0 1 7 chain 27825 chr13 114364328 + 55063470 55063767 AluYa5 310 + 0 296 45145 132 1 0 164 chain 54853 chr13 114364328 + 55134879 55135506 L1PA5 6144 + 2522 3155 27926 15 0 2 234 0 4 378 chain 11743 chr13 114364328 + 55184971 55185258 L1PB1 5432 + 5162 5424 67326 5 2 0 53 2 1 17 1 0 34 49 37 18 8 5 14 2 0 24 1 0 19 7 6 9 1 0 16 1 0 4 chain 122038 chr13 114364328 + 55350988 55352335 L1PA3long 6157 + 4808 6157 15188 1176 0 2 171 chain 7500 chr13 114364328 + 55417788 55417888 LTR9B 643 + 447 561 76128 63 3 17 34 chain 107262 chr13 114364328 + 55425804 55427366 L1PBa 3878 + 1515 3044 17408 4 0 1 37 0 1 53 26 8 77 1 2 205 1 0 5 3 8 35 32 31 76 0 4 75 1 16 18 0 1 539 4 0 4 18 0 319 19 0 10 chain 7516 chr13 114364328 + 55442094 55442260 L1MB1 2102 + 1904 2067 76088 31 7 5 47 9 10 10 21 20 11 1 0 29 chain 430884 chr13 114364328 + 55446408 55452354 HERVL-int 5654 + 0 5654 4739 738 8 0 146 7 6 27 0 1 20 5 2 5 0 3 17 293 10 149 5 7 203 0 2 451 0 1 117 0 2 84 8 9 11 0 5 457 0 1 666 18 19 397 1 2 5 2 0 8 0 2 100 3 0 5 1 4 114 1 2 291 0 12 135 39 40 188 9 10 761 0 1 141 1 0 237 42 10 30 chain 29676 chr13 114364328 + 55485986 55486662 L1PB1 5432 + 4796 5416 42396 42 0 1 4 1 0 54 36 9 170 39 38 24 1 0 6 1 0 14 26 20 40 16 18 30 105 86 18 1 0 23 1 0 11 1 0 12 chain 69195 chr13 114364328 + 55519849 55520616 L1PA4 6152 + 5382 6151 24177 673 0 1 90 0 1 4 chain 21332 chr13 114364328 + 55571448 55571785 THE1B 368 + 0 368 54723 169 1 0 28 43 64 57 5 16 34 chain 31176 chr13 114364328 + 55636152 55636590 L1PA8 5853 + 5421 5853 40998 5 2 0 138 2 1 45 2 0 68 2 1 14 1 0 47 2 1 19 1 0 58 0 2 18 0 1 14 chain 3281 chr13 114364328 + 55689558 55689600 MER58A 224 + 163 205 97175 42 chain 4586 chr13 114364328 + 55707811 55707867 L1PB4 2604 + 2469 2525 87865 56 chain 279700 chr13 114364328 + 55733059 55736448 L1PA7 6471 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1 418 0 1 20 9 4 57 5 6 12 2 3 136 0 1 159 5 18 163 1 0 43 3 1 70 2 1 11 1 0 10 2 1 39 23 21 91 chain 32080 chr13 114364328 + 56040250 56040701 LTR7 482 + 0 482 40287 86 50 0 13 18 68 63 0 31 221 chain 309475 chr13 114364328 + 56040703 56044554 HERVH-int 3825 + 0 3825 6624 212 4 15 252 62 0 53 5 0 38 2 1 8 2 1 9 4 0 14 7 80 14 1 0 22 62 0 10 2 1 49 1 0 134 0 3 307 15 0 218 0 1 239 8 35 410 8 11 209 0 4 399 0 1 689 3 0 6 1 4 132 0 4 240 chain 39278 chr13 114364328 + 56045824 56046275 LTR7 482 + 0 482 35162 225 0 1 28 0 30 198 chain 35911 chr13 114364328 + 56109981 56110424 LTR7 482 + 0 477 37466 266 0 31 68 1 2 52 12 14 44 chain 347873 chr13 114364328 + 56183006 56189005 L1PA8 5853 + 1173 5853 5934 527 0 1 5 2 0 89 1 2 230 1 0 61 0 1 249 0 2 146 0 4 218 0 8 151 18 15 22 0 4 6 19 9 6 0 4 235 0 3 227 1 2 375 3 4 93 12 13 449 1 0 7 0 5 723 18 18 445 1349 38 40 2 0 60 40 18 52 2 1 21 1 0 35 1 0 56 chain 82766 chr13 114364328 + 56187346 56188689 LTR12D 1347 + 0 1347 21071 14 3 4 126 136 138 25 97 26 203 41 31 23 1 0 109 0 89 234 4 0 27 1 0 33 1 0 265 chain 15535 chr13 114364328 + 56272615 56272946 LTR3B_ 500 + 158 457 61608 39 5 10 94 2 0 47 109 74 35 chain 96347 chr13 114364328 + 56361494 56362698 L1PA7 6471 + 5211 6442 18731 145 0 1 106 0 20 15 0 1 103 0 4 15 11 10 505 9 11 295 chain 5410 chr13 114364328 + 56394361 56394426 MER4A 717 + 653 717 83660 56 1 0 8 chain 241073 chr13 114364328 + 56575533 56578212 L1PA3long 6157 + 3464 6157 8450 482 0 1 360 1 0 4 0 1 565 0 1 157 0 1 269 1 2 95 1 11 744 chain 3249 chr13 114364328 + 56591118 56591259 MER21C 908 + 724 884 97492 24 88 108 5 1 0 23 chain 8177 chr13 114364328 + 56598376 56598508 L1PA8 5853 + 5724 5853 74473 16 2 1 14 8 7 40 1 0 51 chain 512589 chr13 114364328 + 56628705 56634916 L1PA6 6164 + 0 6152 2640 371 25 32 88 20 19 1822 1 2 180 98 26 649 0 1 213 0 1 48 0 1 182 1 0 333 2 1 44 0 3 21 22 20 73 0 2 200 0 1 29 0 4 277 2 0 471 1 0 1038 chain 48201 chr13 114364328 + 56639118 56639642 L1PA3long 6157 + 4017 4541 30217 524 chain 28880 chr13 114364328 + 56641066 56641682 L1MA1 4479 + 3586 4184 43513 73 19 4 52 8 7 15 13 11 7 1 0 71 1 0 27 1 0 6 1 0 60 60 70 53 0 1 4 8 12 20 1 0 4 0 1 20 7 5 33 1 0 5 13 0 8 12 17 12 chain 102282 chr13 114364328 + 56661988 56663253 L1PA7 6471 + 5187 6461 18038 232 0 1 197 7 6 148 6 10 256 0 5 419 chain 90091 chr13 114364328 + 56735426 56736646 LTR12C 1709 + 0 1709 19667 241 0 1 36 22 24 30 20 64 403 3 319 68 0 1 37 18 11 17 0 1 29 1 0 178 40 172 77 chain 476338 chr13 114364328 + 56762847 56769351 L1PA7 6471 + 0 6454 3712 285 16 17 106 3 5 603 8 13 193 0 3 123 5 6 99 0 2 685 1 0 15 9 14 47 7 8 390 0 1 26 16 4 441 0 3 239 0 2 198 12 10 74 1 0 593 0 1 109 0 4 174 539 472 144 0 2 510 1 0 79 0 2 605 1 2 11 7 6 84 1 0 44 chain 40095 chr13 114364328 + 56767325 56767864 L1PA7 6471 - 173 725 34482 252 22 24 67 0 6 8 6 11 184 chain 18904 chr13 114364328 + 56818307 56818534 L1PA7 6471 + 6232 6459 57632 227 chain 171840 chr13 114364328 + 56824419 56826336 L1PA5 6144 + 4224 6143 11006 661 0 1 747 0 1 509 chain 83721 chr13 114364328 + 56856544 56857646 L1PA8 5853 + 4758 5853 20867 179 14 15 58 1 0 5 1 0 58 6 6 485 1 0 46 2 0 72 1 0 58 2 1 19 2 1 92 chain 5258 chr13 114364328 + 56881211 56881308 L1MC3 1789 + 203 298 84398 21 7 9 26 8 4 35 chain 14715 chr13 114364328 + 56901205 56901430 LTR12C 1709 + 937 1131 62657 171 41 10 13 chain 4425 chr13 114364328 + 56925112 56925293 MSTC 436 + 196 390 88764 31 59 72 8 0 1 11 41 40 31 chain 63712 chr13 114364328 + 56935103 56935841 L1PA5 6144 + 4763 5514 25473 66 0 9 531 0 4 141 chain 12395 chr13 114364328 + 56958484 56958663 MER30 238 + 48 238 66146 63 4 0 7 2 20 56 3 0 44 chain 263221 chr13 114364328 + 56971174 56974979 MER61-int 3695 + 0 3695 7872 50 4 3 52 3 1 33 1 3 58 40 1 70 2 1 138 3 4 97 0 1 33 1 0 5 0 3 13 0 3 8 3 0 59 0 1 3 6 0 202 20 18 39 41 43 134 2 1 94 0 1 61 0 1 35 54 28 177 6 7 60 1 0 454 58 11 91 0 2 39 1 0 12 4 5 231 0 1 22 1 2 40 1 2 119 0 1 191 2 1 97 1 0 14 4 1 23 1 0 147 0 3 92 0 4 6 9 4 15 6 4 75 0 4 37 7 8 299 1 0 97 chain 75478 chr13 114364328 + 56983277 56984128 L1PA4 6152 + 3632 4484 22721 408 0 1 443 chain 218004 chr13 114364328 + 56994624 56997059 L1PA4 6152 + 1749 4184 9095 2435 chain 5261 chr13 114364328 + 57011568 57011694 LTR40a 516 + 80 151 84384 62 55 0 9 chain 55553 chr13 114364328 + 57015721 57016399 L1PA8A 6298 + 5118 5797 27704 156 0 2 206 2 1 314 chain 19992 chr13 114364328 + 57026351 57026686 L1PA10 4194 + 3820 4150 56397 81 42 43 138 1 0 13 26 21 34 chain 86628 chr13 114364328 + 57040616 57041552 L1PA2 6032 + 4235 5171 20290 936 chain 62931 chr13 114364328 + 57107680 57108586 L1PB2 3958 + 2956 3838 25648 351 2 0 52 1 4 8 13 0 42 0 7 19 2 0 11 9 1 18 0 4 117 8 0 27 1 0 60 7 6 68 2 0 24 1 0 63 chain 16858 chr13 114364328 + 57123027 57123240 L1PA6 6164 + 5908 6122 59965 99 0 2 27 1 0 86 chain 49499 chr13 114364328 + 57219978 57220512 L1HS 6032 + 4842 5376 29765 534 chain 512129 chr13 114364328 + 57229648 57236064 L1PA7 6471 + 0 6468 2660 153 0 1 257 0 1 23 6 7 422 1 0 147 8 32 10 2 3 20 11 10 690 0 1 870 0 1 854 1 0 92 0 8 4 0 1 395 2 0 89 4 5 87 0 2 326 0 5 215 22 28 12 10 12 202 8 7 436 1 0 49 0 2 122 12 14 582 6 7 160 1 0 104 chain 23647 chr13 114364328 + 57242024 57242387 THE1B 368 + 0 368 51363 101 6 2 66 1 0 23 43 53 123 chain 27358 chr13 114364328 + 57271715 57272019 L1PA3long 6157 + 5853 6157 45753 304 chain 69734 chr13 114364328 + 57316414 57317534 L1PA11 4918 + 3551 4629 24058 109 4 0 202 5 7 293 9 7 4 0 1 95 0 4 52 3 0 4 2 0 59 23 18 68 2 0 13 2 1 11 55 42 13 1 0 13 2 0 11 47 33 18 chain 5571 chr13 114364328 + 57338421 57338564 MER21A 919 + 100 245 82930 25 10 22 11 1 0 19 12 0 19 23 26 23 chain 235241 chr13 114364328 + 57356582 57359190 L1PA3long 6157 + 2600 5215 8590 614 0 1 166 0 1 606 9 12 796 0 2 417 chain 35266 chr13 114364328 + 57405280 57405792 LTR7B 505 + 0 496 37852 93 0 31 64 71 0 39 4 25 10 0 3 231 chain 60253 chr13 114364328 + 57411036 57411696 L1PA3long 6157 + 5493 6153 26307 660 chain 4233 chr13 114364328 + 57449427 57449509 MADE1 96 + 0 96 89922 24 14 27 13 1 2 30 chain 6508 chr13 114364328 + 57477437 57477515 L1PA7 6471 + 3963 4040 79315 46 1 0 31 chain 197929 chr13 114364328 + 57477527 57479914 L1PA7 6471 + 4052 6442 9779 698 0 1 4 1 0 306 6 7 263 4 2 281 0 3 820 0 1 4 chain 40533 chr13 114364328 + 57483105 57483600 L1PA5 6144 + 5639 6135 34282 342 17 18 136 chain 26734 chr13 114364328 + 57485899 57486183 L1HS 6032 + 5737 6021 46634 284 chain 135618 chr13 114364328 + 57492812 57494329 L1PA5 6144 + 4625 6144 13475 897 0 1 32 0 1 588 chain 71982 chr13 114364328 + 57622126 57622933 L1P1 4361 + 3441 4248 23542 807 chain 21400 chr13 114364328 + 57705744 57705997 AluSp 311 + 11 264 54632 253 chain 66930 chr13 114364328 + 57816426 57817209 L1PA5 6144 + 5369 6144 24716 150 7 0 297 0 1 176 4 5 137 3 0 9 chain 7301 chr13 114364328 + 57833188 57833334 MSTB2 466 + 292 432 76665 28 0 1 17 45 38 56 chain 11532 chr13 114364328 + 57866462 57866681 L1PA15-16 3068 + 301 516 67701 51 2 0 97 36 34 14 1 0 4 1 2 13 chain 35328 chr13 114364328 + 57870909 57871353 L1PA7 6471 + 6027 6469 37812 291 1 0 4 3 2 145 chain 85101 chr13 114364328 + 57884493 57885455 L1PA4 6152 + 5007 5969 20603 286 2 1 83 0 1 591 chain 10217 chr13 114364328 + 57895986 57896178 Tigger1 2417 + 2198 2387 69979 53 1 0 56 16 14 25 17 0 14 0 17 10 chain 53239 chr13 114364328 + 57962332 57962921 L1PA3long 6157 + 5567 6156 28490 589 chain 7423 chr13 114364328 + 57991349 57991439 5S 121 + 0 90 76330 90 chain 33201 chr13 114364328 + 58006291 58006652 L1PA3long 6157 + 5364 5725 39350 361 chain 39548 chr13 114364328 + 58030500 58030925 L1PA2 6032 + 5607 6032 34987 425 chain 27833 chr13 114364328 + 58096984 58097305 L1PA5 6144 + 5815 6136 45135 321 chain 23381 chr13 114364328 + 58143766 58144110 THE1B 368 + 0 368 51797 33 7 22 117 1 0 26 35 45 125 chain 52305 chr13 114364328 + 58145259 58145961 THE1B-int 1605 + 899 1600 28787 22 5 6 27 7 9 213 1 0 42 8 4 56 0 1 321 chain 74538 chr13 114364328 + 58241107 58241973 MER11D 897 + 6 897 22947 4 0 1 485 0 1 94 3 26 280 chain 5017 chr13 114364328 + 58334916 58334973 MLT1A1 405 + 215 272 85581 57 chain 110395 chr13 114364328 + 58355622 58356977 L1PA7 6471 + 5119 6459 17021 230 0 1 18 0 2 17 1 0 27 29 0 206 0 11 457 0 1 54 0 1 80 8 7 228 chain 17401 chr13 114364328 + 58359997 58360289 L1PA15 4387 + 4033 4314 59351 7 0 1 4 1 0 59 1 0 26 1 0 54 2 1 21 4 0 11 1 0 39 19 16 42 chain 112947 chr13 114364328 + 58426587 58427953 L1PA7 6471 + 5083 6467 16680 112 0 4 108 0 5 131 0 1 143 11 15 12 0 3 65 0 1 115 0 1 509 0 6 7 5 0 138 2 0 8 chain 297607 chr13 114364328 + 58510264 58516476 L1PB1 5432 + 1462 5420 6898 241 0 1 127 0 1 503 0 8 156 0 1 183 0 16 137 7 6 109 0 3 309 0 1 292 1927 0 170 6 7 398 0 1 86 316 0 253 4 0 158 0 1 174 13 11 279 17 11 9 1 0 24 1 0 8 1 0 7 2 1 4 2 0 11 3 1 50 2 1 14 9 8 36 2 1 16 28 15 16 3 1 4 1 0 14 2 0 20 6 5 20 1 0 13 1 0 16 chain 36261 chr13 114364328 + 58513869 58514254 L1HS 6032 + 5647 6032 37235 385 chain 68123 chr13 114364328 + 58524776 58525546 L1PA4 6152 + 5380 6141 24426 699 9 0 62 chain 19662 chr13 114364328 + 58610848 58611086 AluSc 308 + 20 274 56841 32 0 16 206 chain 26011 chr13 114364328 + 58624587 58624858 AluYa5 310 + 35 306 47701 271 chain 27172 chr13 114364328 + 58658398 58658754 THE1A 353 + 0 353 46009 88 2 1 17 5 4 92 1 0 151 chain 21352 chr13 114364328 + 58662371 58662659 AluSg7 307 + 11 294 54699 52 9 1 67 0 1 134 10 12 16 chain 10092 chr13 114364328 + 58683774 58683901 LTR43 600 + 473 600 70212 127 chain 2856 chr13 114364328 + 58687874 58687904 LTR12F 595 + 145 175 101193 30 chain 26282 chr13 114364328 + 58696303 58696842 L1PA15 4387 + 3854 4366 47302 36 2 0 43 1 0 56 0 3 27 44 14 18 0 22 31 1 0 26 10 9 46 1 0 22 5 1 9 1 0 38 54 51 7 2 0 16 5 0 27 1 0 10 chain 26686 chr13 114364328 + 58709745 58710147 LOR1b 457 + 41 444 46702 85 3 4 18 11 10 134 12 19 107 6 0 26 chain 122045 chr13 114364328 + 58713900 58715340 LTR12C 1709 + 0 1709 15187 258 1 2 49 0 1 4 1 0 423 0 165 209 1 0 5 3 1 107 0 4 168 0 102 211 chain 35290 chr13 114364328 + 58726799 58727248 MER4A1 472 + 0 458 37832 159 4 13 286 chain 27394 chr13 114364328 + 58750556 58750911 THE1A 353 + 0 353 45715 109 12 11 82 1 0 151 chain 91506 chr13 114364328 + 58773220 58774427 LTR12C 1709 + 86 1709 19417 237 1 2 11 0 43 41 1 0 4 0 1 39 0 1 25 1 2 108 12 0 10 5 6 34 0 278 184 1 0 5 3 1 106 0 4 53 1 2 156 0 101 169 chain 14929 chr13 114364328 + 58791402 58791696 MSTA 426 + 81 426 62354 20 19 55 47 42 38 55 9 29 41 1 0 60 chain 143218 chr13 114364328 + 58845091 58847232 L1PB1 5432 + 3286 5415 12839 30 10 13 14 14 15 191 15 11 161 4 6 116 2 3 49 8 20 629 0 1 4 1 0 26 0 1 52 12 9 76 0 1 90 4 3 53 1 4 36 2 1 90 0 3 52 1 0 52 12 11 4 1 0 25 8 6 12 2 0 3 2 0 9 13 11 41 3 5 11 1 0 44 1 0 16 2 0 6 1 0 11 8 0 11 2 0 8 1 0 14 2 0 24 1 0 21 1 0 13 1 0 11 chain 6131 chr13 114364328 + 58871299 58871400 MLT2B2 565 + 0 108 80606 36 17 24 48 chain 42450 chr13 114364328 + 58902795 58903343 MLT2A2 560 + 0 560 33096 393 0 6 6 3 8 85 4 5 57 chain 7658 chr13 114364328 + 58950357 58950489 MER11A 1151 + 1016 1151 75730 36 7 6 12 0 6 9 7 6 21 1 0 39 chain 37707 chr13 114364328 + 59009159 59009650 LTR12_ 688 + 0 688 36269 80 1 67 33 1 25 147 0 103 155 0 4 74 chain 42253 chr13 114364328 + 59036629 59037392 L1PB1 5432 + 4677 5392 33216 76 0 1 40 0 8 160 0 1 51 4 6 67 69 16 11 1 0 24 1 0 4 3 2 11 8 4 9 2 0 52 2 1 8 0 18 34 1 0 15 26 17 13 3 1 5 1 0 14 2 0 18 0 1 5 1 0 22 chain 23778 chr13 114364328 + 59047146 59047429 AluSp 311 + 9 292 51145 283 chain 7080 chr13 114364328 + 59054358 59054798 L1PREC2 3366 + 2888 3215 77329 16 25 18 22 44 27 35 6 4 41 3 1 7 1 0 4 1 0 12 134 66 14 56 41 19 chain 20328 chr13 114364328 + 59081948 59082207 AluSc8 310 + 0 259 55974 77 1 2 47 1 0 133 chain 6161 chr13 114364328 + 59095354 59095432 MLT1C 463 + 47 124 80481 64 1 0 13 chain 31211 chr13 114364328 + 59097334 59097813 MLT2A2 560 + 0 504 40964 165 26 42 7 1 0 99 11 0 9 6 17 60 3 14 86 1 0 5 chain 9545 chr13 114364328 + 59114045 59114166 L1PA16 3655 + 3473 3591 71377 105 3 0 13 chain 4863 chr13 114364328 + 59204301 59204355 MER132 119 + 25 79 86355 54 chain 28727 chr13 114364328 + 59289381 59289756 THE1C 375 + 0 375 43748 186 7 8 156 1 0 25 chain 524027 chr13 114364328 + 59291395 59297848 L1PA7 6471 + 0 6469 2090 412 6 2 983 0 3 15 1 4 334 1 0 331 4 8 74 0 5 518 7 6 388 2 1 28 1 8 364 4 2 35 0 1 7 2 1 472 0 2 91 5 27 135 0 1 894 7 4 213 0 1 254 9 5 9 0 2 5 1 0 4 5 6 55 1 0 293 26 11 147 0 1 297 3 0 10 chain 22018 chr13 114364328 + 59314184 59314495 AluY 311 + 12 299 53808 121 18 14 46 9 0 96 11 0 10 chain 406771 chr13 114364328 + 59376844 59382170 L1PA7 6471 + 3 6470 5060 59 0 17 330 3 0 555 1 4 537 12 13 353 10 22 739 0 2 68 0 10 629 0 1406 82 0 1 794 8 7 45 310 0 333 1 2 157 0 1 145 7 6 136 0 2 12 chain 22958 chr13 114364328 + 59403160 59403468 L1MA2 4263 + 3806 4105 52428 143 18 16 93 7 0 47 chain 11983 chr13 114364328 + 59417226 59417394 L1PA8 5853 + 5688 5853 66868 6 1 0 49 3 2 15 2 1 92 chain 107945 chr13 114364328 + 59427269 59428826 L1PB1 5432 + 3881 5399 17335 99 6 7 338 4 5 50 0 1 115 1 2 128 8 0 178 1 0 150 0 3 146 17 11 24 1 0 9 27 20 38 35 32 43 1 0 16 3 0 15 9 0 16 3 1 4 1 0 14 2 0 24 1 0 22 1 0 7 chain 31848 chr13 114364328 + 59440491 59440960 LTR12C 1709 + 645 1196 40456 4 0 1 43 41 0 50 2 0 93 2 1 192 1 89 8 0 37 33 chain 4003 chr13 114364328 + 59480069 59480115 U7 62 + 0 46 91429 46 chain 19773 chr13 114364328 + 59513449 59513685 LTR17 781 + 89 326 56708 191 0 1 45 chain 9144 chr13 114364328 + 59556747 59556911 L1PA17 2846 + 2536 2697 72246 5 0 1 50 2 0 6 2 1 12 9 8 5 0 2 6 1 0 17 1 0 48 chain 6915 chr13 114364328 + 59568067 59568174 LTR9B 643 + 454 559 77907 21 0 1 36 0 7 6 11 1 33 chain 502966 chr13 114364328 + 59590682 59596761 L1PA6 6164 + 0 6154 3034 13 0 1 125 12 12 85 0 2 47 0 22 210 0 2 48 1 0 395 10 11 50 2 1 212 0 16 295 0 1 128 1 2 467 0 3 143 0 7 34 2 3 205 0 3 167 4 7 210 1 2 258 0 1 9 6 2 29 25 11 25 0 3 33 1 0 230 1 0 110 1 5 44 0 1 200 2 3 383 0 3 89 0 2 132 0 2 252 0 3 293 0 1 367 0 3 661 0 9 61 chain 28204 chr13 114364328 + 59645736 59646090 THE1A 353 + 0 353 44557 119 2 1 233 chain 122062 chr13 114364328 + 59646090 59647641 THE1A-int 1579 + 0 1574 15185 161 0 6 107 1 0 4 0 1 21 2 3 488 0 1 87 4 7 333 0 1 292 0 11 51 chain 24179 chr13 114364328 + 59647646 59647989 THE1A 353 + 0 353 50522 110 1 0 90 31 41 98 3 4 10 chain 5097 chr13 114364328 + 59656300 59656364 Tigger2a 444 + 330 394 85176 64 chain 4439 chr13 114364328 + 59690564 59690632 Tigger16a 304 + 174 240 88670 22 9 7 37 chain 89087 chr13 114364328 + 59709274 59710254 L1PA3long 6157 + 5176 6156 19843 980 chain 14001 chr13 114364328 + 59744428 59744627 MER30 238 + 0 230 63594 14 4 22 68 8 24 71 3 0 31 chain 138756 chr13 114364328 + 59825861 59827374 L1PA3long 6157 + 3824 5338 13208 122 0 1 1391 chain 46804 chr13 114364328 + 59850679 59851187 L1PA2 6032 + 3169 3677 30725 508 chain 38080 chr13 114364328 + 59898777 59899328 MLT2A2 560 + 0 560 36008 70 0 1 21 3 0 88 1 0 26 21 20 83 1 2 25 10 11 53 0 11 149 chain 4153 chr13 114364328 + 59917280 59917332 MER2 342 + 267 319 90446 52 chain 117222 chr13 114364328 + 59955576 59957212 THE1B-int 1605 + 26 1605 16015 86 54 0 318 37 21 67 0 1 143 64 66 27 5 15 835 chain 272412 chr13 114364328 + 59984539 59987488 L1PA2 6032 + 3083 6032 7645 2949 chain 68206 chr13 114364328 + 60046309 60047137 L1PA7 6471 + 5646 6469 24402 225 0 1 267 1 0 65 1 0 111 1 0 143 3 0 11 chain 24687 chr13 114364328 + 60104809 60105125 AluY 311 + 0 308 49755 59 5 1 185 8 4 59 chain 3979 chr13 114364328 + 60205649 60205747 SVA_F 1814 + 396 453 91586 34 42 1 22 chain 20036 chr13 114364328 + 60231737 60231966 L1PA5 6144 + 5900 6130 56333 87 0 1 142 chain 101636 chr13 114364328 + 60253771 60254976 L1PA6 6164 + 4945 6162 18110 369 0 8 211 0 3 79 1 2 545 chain 14397 chr13 114364328 + 60293612 60293853 MER47A 366 + 78 363 63039 52 0 5 86 6 10 22 2 53 12 18 2 43 chain 187657 chr13 114364328 + 60294041 60296098 L1PA3long 6157 + 4098 6157 10229 1720 0 1 138 0 1 199 chain 129783 chr13 114364328 + 60375026 60376612 L1PA7 6471 + 4922 6468 14066 63 1 0 306 38 0 214 2 1 115 0 3 10 0 1 826 4 0 7 chain 28080 chr13 114364328 + 60407812 60408313 THE1A 353 + 0 353 44748 108 1 0 115 147 0 130 chain 130445 chr13 114364328 + 60408313 60409885 THE1A-int 1579 + 0 1579 13986 252 0 7 327 2 0 253 0 1 637 0 1 101 chain 27176 chr13 114364328 + 60409885 60410228 THE1A 353 + 0 341 46003 110 1 0 88 1 0 143 chain 30874 chr13 114364328 + 60419405 60419798 L1PA8 5853 + 5469 5853 41246 93 1 0 38 1 0 13 2 0 67 1 0 7 3 1 52 2 1 19 1 0 93 chain 50092 chr13 114364328 + 60462815 60463841 L1MA4 2864 + 1399 2201 29525 241 0 5 19 6 11 24 279 26 269 1 6 16 9 1 14 5 6 80 0 21 24 16 17 11 1 0 11 chain 7737 chr13 114364328 + 60472593 60472692 L1MB2 1706 + 1154 1253 75519 99 chain 319294 chr13 114364328 + 60496381 60501139 HERVL-int 5654 + 0 4365 6420 101 1 2 6 1 0 314 747 0 224 3 2 40 0 260 136 3 0 39 5 4 249 1 0 143 38 37 193 0 7 68 0 8 127 0 2 461 0 12 301 0 1 195 0 10 239 0 4 284 0 2 130 0 1 98 0 1 368 13 13 124 6 59 100 chain 195551 chr13 114364328 + 60505586 60508525 L1P2 5180 + 1196 4902 9860 70 9 0 4 0 9 542 0 2 30 12 15 12 13 0 174 315 1 272 1 0 65 0 4 29 1 4 89 1 0 53 8 12 120 12 16 54 0 1 4 9 12 128 5 1 6 0 4 77 0 1067 339 0 5 485 chain 34434 chr13 114364328 + 60513902 60514328 THE1B-int 1605 + 0 432 38408 40 1 0 222 1 8 162 chain 3621 chr13 114364328 + 60568031 60568070 MER33 330 + 251 290 94268 39 chain 25227 chr13 114364328 + 60598515 60599008 L1PREC2 3366 + 2464 2951 48906 20 18 22 242 16 14 44 2 1 10 71 71 17 24 17 29 chain 29200 chr13 114364328 + 60653684 60654032 L1PA6 6164 + 5806 6158 43042 303 0 4 45 chain 539078 chr13 114364328 + 60709752 60715781 L1PA3long 6157 + 1 6157 1396 5 3 0 146 14 15 501 0 2 44 0 1 27 1 0 25 9 137 146 0 1 115 1 4 2363 3 0 900 1 0 208 1 0 1516 chain 29562 chr13 114364328 + 60735596 60735906 AluYg6 310 + 0 310 42537 310 chain 42214 chr13 114364328 + 60744390 60744911 THE1B-int 1605 + 1081 1600 33238 144 6 4 371 chain 506794 chr13 114364328 + 60900040 60907050 L1PA7 6471 + 3 6470 2903 309 0 2 88 3 1 946 24 25 8 0 1 100 0 9 542 0 1 603 0 3 65 2 6 177 0 4 591 1 2 11 1 0 73 0 4 49 0 1 10 617 4 832 0 4 201 8 12 262 2 0 38 2 4 204 5 9 103 0 5 228 1 3 65 0 1 8 1 4 17 7 8 20 13 17 453 2 3 65 0 2 66 0 11 168 0 1 14 1 0 4 chain 3220 chr13 114364328 + 60928844 60928878 MLT2B1 522 + 484 518 97731 34 chain 25469 chr13 114364328 + 60960464 60960836 THE1C 375 + 0 375 48522 130 9 13 35 28 28 144 1 0 25 chain 6199 chr13 114364328 + 60974330 60974454 MER67C 710 + 191 402 80358 70 34 121 20 chain 36113 chr13 114364328 + 61036316 61036782 LTR10F 562 + 0 562 37335 39 1 0 108 1 29 14 1 60 31 0 10 271 chain 30079 chr13 114364328 + 61088457 61088865 LTR7 482 + 0 482 41978 69 8 46 109 8 40 25 0 1 15 0 1 80 0 2 94 chain 291588 chr13 114364328 + 61088867 61092776 HERVH-int 3825 + 0 3825 7083 376 0 2 83 1 119 24 43 14 13 21 18 7 1 0 46 12 11 66 0 1 58 2 5 90 0 8 221 0 1 63 15 0 128 0 5 72 9 0 27 0 2 10 1 0 110 8 5 5 0 3 346 12 1 29 2 0 242 10 19 11 5 6 502 73 77 25 1 0 5 1 2 115 165 0 43 1 0 809 chain 31110 chr13 114364328 + 61094029 61094439 LTR7 482 + 0 482 41051 69 8 46 109 10 42 23 0 1 17 0 1 174 chain 11034 chr13 114364328 + 61101219 61101426 MER39 703 + 461 648 68505 5 0 1 55 53 32 94 chain 3340 chr13 114364328 + 61108871 61108909 MLT2B3 573 + 535 573 96687 38 chain 249587 chr13 114364328 + 61206085 61209045 HERVH-int 3825 + 0 3825 8251 333 1 0 33 0 868 191 0 1 513 12 1 29 2 0 280 0 1 841 1 4 258 6 0 5 3 9 41 24 25 294 6 11 87 chain 27193 chr13 114364328 + 61210876 61211279 LTR7 482 + 0 482 45973 69 8 46 109 8 40 21 2 0 31 1 11 35 4 5 115 chain 53295 chr13 114364328 + 61266672 61267387 L1P2 5180 + 2 713 27645 147 3 2 43 1 0 53 13 12 186 1 0 69 0 1 48 1 0 150 chain 438844 chr13 114364328 + 61267388 61272574 L1PA6 6164 + 960 6159 4592 280 1 0 447 0 2 508 0 1 127 0 1 61 1 3 309 0 1 485 3 1 450 1 0 313 1 0 285 0 1 233 0 3 580 0 3 261 1 5 839 chain 500965 chr13 114364328 + 61323581 61329560 L1PA5 6144 + 10 5969 3101 54 13 4 67 10 24 690 4 5 100 25 0 211 13 4 86 0 1 217 0 1 197 0 4 632 7 0 192 0 2 573 0 1 407 0 4 291 7 8 513 1 0 973 0 4 12 1 0 7 1 0 675 chain 5321 chr13 114364328 + 61339792 61339856 LTR12E 1234 + 645 709 84094 64 chain 336975 chr13 114364328 + 61365295 61369440 L1PA7 6471 + 2306 6470 6117 290 0 4 32 7 0 89 0 2 28 7 11 593 0 1 194 3 0 266 6 10 576 4 9 245 5 4 8 0 4 16 5 6 262 0 5 25 0 2 634 3 0 645 0 2 80 1 0 121 chain 162432 chr13 114364328 + 61439473 61441497 L1PA8A 6298 + 4059 6164 11582 542 0 1 176 5 6 256 0 67 191 1 2 183 2 1 287 0 12 263 1 0 4 0 1 113 chain 2971 chr13 114364328 + 61574141 61574174 L1MB7 1623 + 1393 1426 100183 33 chain 34428 chr13 114364328 + 61607015 61607486 LTR19A 502 + 0 460 38410 191 2 0 5 7 8 33 13 0 74 1 2 47 2 4 96 chain 51130 chr13 114364328 + 61671699 61672352 PABL_A 660 + 0 660 29186 183 1 4 152 0 1 78 4 7 235 chain 158070 chr13 114364328 + 61743981 61745904 L1PA6 6164 + 4250 6161 11869 109 1 5 41 1 2 236 2 0 401 19 5 266 1 0 104 0 1 197 1 0 544 chain 166660 chr13 114364328 + 61805678 61807532 L1PA3long 6157 + 4300 6155 11296 1763 0 1 91 chain 117932 chr13 114364328 + 61807554 61809069 L1PA7 6471 + 4947 6469 15895 23 34 22 204 1 0 276 0 1 141 0 2 77 0 1 16 6 4 255 1 0 38 0 18 367 0 1 76 chain 70250 chr13 114364328 + 61833824 61834602 L1PA4 6152 + 5373 6151 23937 778 chain 20502 chr13 114364328 + 61879437 61879768 THE1B 368 + 2 358 55783 41 6 21 16 4 5 92 1 0 21 35 45 115 chain 40828 chr13 114364328 + 61923750 61924249 MER9a3 513 + 14 513 34078 431 2 0 6 2 4 58 chain 24332 chr13 114364328 + 61946121 61946396 L1PA5 6144 + 5867 6142 50281 275 chain 4219 chr13 114364328 + 61952986 61953065 MADE1 96 + 0 96 90015 32 16 33 31 chain 4012 chr13 114364328 + 62044581 62044627 MER67C 710 + 224 270 91368 46 chain 153467 chr13 114364328 + 62062647 62064566 L1PA8A 6298 + 4103 6289 12150 134 0 1 124 1 0 530 3 1 117 11 29 250 6 255 417 1 0 190 0 2 28 1 2 106 chain 38334 chr13 114364328 + 62148957 62149453 LTR12F 595 + 0 595 35825 91 25 124 380 chain 80807 chr13 114364328 + 62151201 62152261 MER11B 1079 + 7 1059 21471 257 3 0 117 2 3 175 40 39 70 0 1 103 6 0 287 chain 36207 chr13 114364328 + 62157767 62158242 LTR12F 595 + 0 595 37266 69 1 2 25 0 119 49 1 2 4 1 0 325 chain 118684 chr13 114364328 + 62176305 62177988 L1PA10 4194 + 2468 4161 15775 26 34 22 92 12 4 122 0 1 15 0 1 88 3 0 322 0 3 59 0 16 26 8 20 69 20 17 8 0 7 676 10 4 7 0 5 26 0 1 12 3 0 33 1 0 11 chain 27246 chr13 114364328 + 62249404 62249760 L1PA7 6471 + 6108 6465 45902 73 10 9 157 4 6 112 chain 26071 chr13 114364328 + 62367951 62368310 THE1B 368 + 0 368 47623 169 1 0 29 35 45 125 chain 114813 chr13 114364328 + 62379043 62380451 LTR12C 1709 + 0 1709 16411 304 6 6 4 1 0 188 1 0 290 1 319 6 2 0 107 0 4 297 17 0 184 chain 23080 chr13 114364328 + 62592789 62593051 AluSc5 308 + 11 273 52242 262 chain 31347 chr13 114364328 + 62624167 62624589 LTR7B 505 + 0 495 40849 108 0 10 57 0 38 12 3 27 26 0 2 82 1 0 26 0 1 52 14 13 41 chain 21146 chr13 114364328 + 62629284 62629505 AluYa5 310 + 89 310 54954 221 chain 32596 chr13 114364328 + 62642906 62643536 LTR10F 562 + 13 562 39868 73 29 30 18 19 13 43 17 0 28 19 2 15 42 0 19 22 11 46 0 5 138 9 10 36 0 5 57 chain 14418 chr13 114364328 + 62712085 62712250 LTR12 884 + 180 345 63008 165 chain 5017 chr13 114364328 + 62745983 62746046 MER2 342 + 152 215 85576 63 chain 45888 chr13 114364328 + 62755164 62756026 L1PB1 5432 + 4664 5420 31109 316 1 6 117 41 0 11 39 0 24 26 20 11 3 1 49 1 0 18 6 5 35 4 3 16 3 0 7 57 43 24 1 0 21 1 0 13 1 0 16 chain 62192 chr13 114364328 + 62855546 62856593 L1PB1 5432 + 4417 5430 25817 133 16 15 62 13 7 461 13 14 6 3 0 29 1 0 12 22 16 48 2 1 16 1 0 38 72 59 12 2 0 24 1 0 23 1 0 12 5 7 14 1 0 4 chain 2678 chr13 114364328 + 63000020 63000524 L1MA4A 3247 + 1481 1967 102459 27 449 431 28 chain 14354 chr13 114364328 + 63058209 63058458 MER51A 677 + 424 676 63105 62 58 62 67 1 0 61 chain 99164 chr13 114364328 + 63181272 63182407 L1PA4 6152 + 4462 5602 18392 167 1 0 92 0 4 163 0 1 431 0 1 281 chain 4321 chr13 114364328 + 63189879 63189925 MADE1 96 + 50 96 89354 46 chain 171378 chr13 114364328 + 63196203 63198095 L1PA4 6152 + 4258 6149 11029 1744 1 0 147 chain 271829 chr13 114364328 + 63213550 63217146 HERVH-int 3825 + 0 3825 7667 325 0 30 166 4 5 4 1 0 11 1 0 4 0 1 24 1 0 10 1 0 12 24 12 14 1 38 30 24 1 13 25 1 18 22 0 6 1 2 52 1 0 206 0 1 240 15 0 457 6 33 299 0 10 109 5 8 768 0 1 65 146 362 260 0 2 225 chain 25950 chr13 114364328 + 63218717 63219124 LTR7 482 + 0 474 47795 30 0 6 18 16 5 10 8 46 109 8 40 25 5 6 70 1 2 107 chain 59773 chr13 114364328 + 63233598 63234348 LTR12 884 + 1 884 26439 116 0 1 90 1 134 34 2 0 203 7 9 121 1 0 175 chain 37436 chr13 114364328 + 63236931 63237381 LTR12_ 688 + 239 688 36451 274 1 0 175 chain 14402 chr13 114364328 + 63263795 63264270 LTR12 884 + 78 870 63031 40 5 4 59 1 0 8 96 0 19 0 42 14 145 518 88 chain 15564 chr13 114364328 + 63267269 63267467 L1PB 1623 + 877 1077 61570 172 1 3 25 chain 121116 chr13 114364328 + 63268487 63270145 L1PB1 5432 + 3104 4801 15329 388 1 2 36 1 0 90 0 1 106 36 68 42 0 2 117 0 1 37 54 55 123 1 0 372 0 6 76 3 0 175 chain 15100 chr13 114364328 + 63306204 63306399 LTR12C 1709 + 934 1176 62154 150 1 48 44 chain 5612 chr13 114364328 + 63359783 63359893 L1MC 810 + 212 319 82745 40 30 26 5 0 1 35 chain 75038 chr13 114364328 + 63417297 63418195 L1PA5 6144 + 5238 6140 22835 411 5 8 153 1 2 170 5 0 6 1 6 146 chain 42044 chr13 114364328 + 63440803 63441501 MER50B 698 + 0 698 33331 51 1 3 149 11 46 33 26 9 89 5 7 7 2 0 28 20 0 33 41 40 46 4 5 152 chain 282590 chr13 114364328 + 63442057 63487149 HERVL-int 5654 + 0 5654 7353 75 0 1 109 5 0 56 0 1 83 0 1 6 0 3 5 2 0 7 18 20 257 0 15 196 11 13 56 0 8 58 0 2 635 0 1 60 7 6 315 40567 1082 518 4 5 1114 11 12 36 0 7 178 2 1 58 0 1 43 1 5 122 5 6 47 0 2 208 0 1 83 0 1 124 0 1 10 chain 59174 chr13 114364328 + 63444018 63444761 HERVL-int 5654 + 4899 5647 26530 286 0 1 173 1 4 70 3 4 210 chain 3086 chr13 114364328 + 63487568 63487603 MLT2A1 477 + 440 475 98905 35 chain 15030 chr13 114364328 + 63530995 63531272 THE1A 353 + 78 353 62229 33 1 0 45 59 58 15 0 1 4 7 6 113 chain 52107 chr13 114364328 + 63593164 63593967 LTR12D 1347 + 588 1346 28840 54 13 0 4 12 0 9 0 1 36 2 19 52 23 0 91 0 2 3 2 0 61 10 9 54 10 0 39 4 0 18 1 0 9 1 0 33 1 0 183 0 3 78 chain 57691 chr13 114364328 + 63686851 63687580 LTR17 781 + 0 781 27057 111 4 17 199 0 4 26 0 55 9 5 6 327 22 0 19 0 1 7 chain 35419 chr13 114364328 + 63745590 63746042 L1PA5 6144 + 5698 6144 37768 112 0 1 80 2 1 164 11 5 83 chain 32456 chr13 114364328 + 63748750 63749116 L1PA5 6144 + 5778 6144 39983 366 chain 3168 chr13 114364328 + 63749928 63750050 LTR41B 718 + 17 141 98220 33 70 72 19 chain 47104 chr13 114364328 + 63838090 63838679 HERVE-int 4064 + 2118 2705 30610 93 3 0 253 4 5 236 chain 6407 chr13 114364328 + 63839080 63839158 HERVE-int 4064 + 2120 2199 79649 20 0 1 58 chain 40169 chr13 114364328 + 63839173 63839660 HERVE-int 4064 + 2211 2698 34541 487 chain 47158 chr13 114364328 + 63839745 63840345 HERVE-int 4064 + 2118 2717 30591 93 13 11 388 1 2 105 chain 44795 chr13 114364328 + 63841519 63842104 HERVE-int 4064 + 2118 2705 31708 84 26 25 283 1 3 101 0 1 90 chain 48093 chr13 114364328 + 63842578 63843845 HERVE-int 4064 + 2118 2717 30261 22 0 1 70 3 0 10 667 1 495 chain 38959 chr13 114364328 + 63842683 63843166 HERVE-int 4064 + 2222 2705 35388 483 chain 7140 chr13 114364328 + 63843244 63843337 HERVE-int 4064 + 2118 2211 77132 93 chain 50835 chr13 114364328 + 63844573 63845276 L1PA8 5853 + 5156 5853 29263 364 6 7 37 1 0 48 2 0 66 24 22 40 2 1 18 2 1 93 chain 6457 chr13 114364328 + 63887905 63887989 MLT1A0 366 + 25 109 79492 8 1 0 21 0 1 54 chain 151395 chr13 114364328 + 63936840 63938849 L1PA8A 6298 + 3045 5046 12261 140 1 2 158 0 2 45 5 0 7 8 0 19 3 7 206 12 13 54 4 0 171 11 12 86 1 2 175 0 2 162 5 0 19 5 6 226 0 1 259 2 0 175 16 18 34 chain 59411 chr13 114364328 + 64107666 64108333 L1PA4 6152 + 5482 6151 26531 158 0 1 362 0 1 147 chain 12901 chr13 114364328 + 64137596 64137939 L1PB1 5432 + 5105 5415 65251 12 9 6 12 1 0 11 1 0 12 7 3 7 2 0 13 0 3 24 1 0 11 19 17 45 2 1 14 3 0 6 21 11 14 2 0 5 1 0 14 2 0 24 7 6 15 1 0 13 1 0 11 chain 2838 chr13 114364328 + 64143396 64143434 L1MA2 4263 + 4073 4110 101335 32 1 0 5 chain 27703 chr13 114364328 + 64174605 64174921 L1PA5 6144 + 5828 6144 45312 316 chain 44274 chr13 114364328 + 64193377 64193933 L1PA7 6471 + 5077 5644 31969 187 2 3 46 7 9 36 0 1 83 0 1 180 0 6 15 chain 19544 chr13 114364328 + 64232750 64232958 L1PA2 6032 + 4215 4423 56962 208 chain 22225 chr13 114364328 + 64262910 64263200 THE1D-int 1627 + 42 328 53516 79 10 6 201 chain 4131 chr13 114364328 + 64362139 64362213 MER84 505 + 7 80 90569 30 14 13 30 chain 440219 chr13 114364328 + 64362863 64368865 HERVL-int 5654 + 0 5646 4573 105 1 0 543 0 1 4 1 0 9 2 1 120 7 1 80 5 10 907 0 1 89 2 1 384 0 13 90 1 0 183 0 2 121 1 0 481 0 1 113 28 0 147 1 2 1148 1 0 5 1 2 31 324 0 467 8 0 114 0 6 43 31 9 108 13 19 19 11 12 20 0 1 233 chain 3448 chr13 114364328 + 64476345 64476461 MER11A 1151 + 791 887 95672 32 17 1 11 36 32 20 chain 28617 chr13 114364328 + 64484421 64484779 L1PA8 5853 + 5482 5853 43922 82 1 0 44 2 0 71 1 0 11 1 0 50 1 19 94 chain 4668 chr13 114364328 + 64519732 64519825 L1PB4 2604 + 2262 2356 87446 17 25 26 51 chain 59041 chr13 114364328 + 64525441 64526197 LTR17 781 + 0 772 26653 83 3 4 192 0 2 20 11 1 25 0 1 45 0 1 18 1 0 324 0 22 34 chain 157217 chr13 114364328 + 64575806 64578136 L1PA8A 6298 + 4253 6290 11930 102 321 11 459 2 0 105 0 2 69 0 2 137 0 2 32 0 2 199 0 1 113 2 9 69 0 2 434 6 5 181 2 4 97 chain 40449 chr13 114364328 + 64633220 64633668 L1PA3long 6157 + 5702 6150 34349 448 chain 48936 chr13 114364328 + 64686448 64687033 LTR10C 591 + 0 585 29970 34 2 0 476 0 2 73 chain 100231 chr13 114364328 + 64720414 64721736 L1P3 4156 + 2806 4139 18274 77 0 4 84 20 21 64 0 5 33 5 9 114 0 1 281 0 1 108 0 1 214 2 3 175 5 1 105 2 0 7 2 1 24 chain 13298 chr13 114364328 + 64730481 64730727 Tigger2 2703 + 2272 2536 64620 95 36 50 32 20 24 63 chain 58129 chr13 114364328 + 64730774 64731581 L1PA8 5853 + 5030 5847 26926 72 1 4 364 18 17 28 1 0 46 0 16 30 3 1 70 2 1 9 9 7 44 3 2 22 1 0 84 chain 77487 chr13 114364328 + 64773222 64774295 L1P3 4156 + 3062 4135 22196 35 3 0 26 0 1 308 0 5 81 0 1 12 3 1 20 4 0 6 0 4 65 6 7 397 12 0 8 5 17 51 2 0 6 3 2 20 chain 490726 chr13 114364328 + 64827748 64834170 L1PA7 6471 + 0 6469 3402 180 27 18 46 0 10 64 7 23 44 0 2 36 24 37 294 1 0 29 1 0 87 1 0 106 2 0 263 0 2 119 0 1 398 5 6 265 1 0 133 0 4 182 6 5 66 5 0 81 7 9 129 5 6 59 0 4 378 2 3 11 16 20 105 16 18 4 0 1 236 3 2 196 0 1 233 28 22 109 0 1 5 2 1 306 0 1 363 0 1 138 0 3 83 3 0 130 0 1 4 1 0 278 0 1 4 1 0 102 0 1 151 0 3 51 1 4 259 7 6 192 0 1 306 0 1 25 chain 13829 chr13 114364328 + 64854975 64855189 MSTA 426 + 192 408 63831 22 29 31 163 chain 9218 chr13 114364328 + 64858472 64858600 MER85 139 + 0 139 72087 95 4 7 7 0 8 22 chain 61263 chr13 114364328 + 65044957 65045693 L1PA5 6144 + 5324 6077 26046 325 0 16 147 0 1 181 1 2 48 12 11 22 chain 175393 chr13 114364328 + 65184151 65186355 L1PA7 6471 + 4295 6469 10809 117 0 2 59 0 1 44 1 3 155 0 4 310 2 1 87 33 2 541 1 0 66 19 16 756 3 0 10 chain 28075 chr13 114364328 + 65201673 65202041 THE1B 368 + 0 368 44758 98 5 6 64 1 0 200 chain 21563 chr13 114364328 + 65203127 65203402 THE1B-int 1605 + 1303 1594 54423 207 0 16 68 chain 29452 chr13 114364328 + 65203411 65203780 THE1B 368 + 0 368 42669 168 1 0 200 chain 162211 chr13 114364328 + 65220870 65222784 L1PA5 6144 + 4250 6138 11596 73 0 1 504 0 10 332 2 1 101 40 1 385 0 3 477 chain 77430 chr13 114364328 + 65273450 65274531 MER11A 1151 + 0 1147 22213 55 0 99 76 1 0 64 4 0 32 1 3 105 9 10 94 0 1 145 5 6 145 25 1 11 6 13 24 18 0 36 0 1 60 6 7 159 chain 4970 chr13 114364328 + 65297285 65297383 L1MA8 2339 + 2160 2249 85799 38 20 13 22 2 0 16 chain 9955 chr13 114364328 + 65420848 65421768 L1PB 1623 + 738 1586 70518 351 17 0 194 1 2 18 26 7 35 0 1 12 4 5 4 0 1 78 1 0 7 2 1 30 1 0 4 1 0 5 87 55 5 2 0 22 2 0 11 chain 500281 chr13 114364328 + 65435416 65441515 L1PA6 6164 + 0 6156 3121 371 25 32 57 51 50 259 2 35 504 24 0 115 0 7 683 0 3 201 0 8 230 0 1 200 0 1 432 0 1 112 1 0 131 0 1 358 0 1 886 0 1 296 0 17 410 0 1 599 15 16 137 chain 45346 chr13 114364328 + 65490844 65491362 L1PA6 6164 + 4131 4649 31397 518 chain 26297 chr13 114364328 + 65491364 65491668 L1PA6 6164 + 4649 4948 47273 177 5 0 122 chain 53653 chr13 114364328 + 65491679 65492297 L1PA6 6164 + 5369 5987 28344 618 chain 13480 chr13 114364328 + 65492301 65492469 L1PA6 6164 + 5998 6162 64335 158 4 0 6 chain 486282 chr13 114364328 + 65585175 65591324 L1PA5 6144 + 1 6141 3507 119 0 14 76 2 1 29 37 40 54 46 47 26 8 14 165 7 0 111 0 1 27 1 2 142 0 1 82 25 0 213 13 4 239 1 6 232 4 1 5 0 3 677 0 2 5 2 0 417 20 13 407 1 0 115 0 1 5 1 0 863 0 1 16 1 4 81 0 8 36 0 1 321 6 0 280 1 0 4 6 8 1159 0 1 61 chain 93722 chr13 114364328 + 65619560 65621092 L1PB 1623 + 102 1586 19078 10 1 0 5 1 0 67 12 14 6 5 0 13 26 28 24 1 0 109 38 39 68 1 0 111 0 3 370 0 1 29 2 4 150 2 1 153 15 1 119 0 1 14 14 12 31 100 68 22 2 0 11 chain 44773 chr13 114364328 + 65636269 65636878 LTR71B 605 + 0 605 31714 141 29 37 24 0 1 67 16 3 332 chain 38488 chr13 114364328 + 65662187 65662727 LTR12_ 688 + 6 673 35719 53 3 44 35 24 8 21 1 0 135 0 1 4 1 0 49 0 103 214 chain 91797 chr13 114364328 + 65686569 65687605 L1PA5 6144 + 3500 4538 19371 806 0 1 181 0 1 49 chain 11563 chr13 114364328 + 65733889 65734085 L1PA7 6471 + 6224 6441 67637 83 46 67 67 chain 74137 chr13 114364328 + 65771405 65772412 MER11A 1151 + 0 1150 23058 45 10 109 141 1 0 26 0 5 62 0 1 54 0 1 94 0 1 21 1 0 122 6 9 9 2 0 5 0 2 36 0 4 56 1 0 15 7 41 58 0 1 53 4 5 117 4 0 57 chain 3159 chr13 114364328 + 65784865 65784905 MER58A 224 + 173 213 98280 40 chain 19851 chr13 114364328 + 65907143 65907401 THE1C-int 1605 + 0 256 56610 12 4 3 112 1 0 129 chain 37731 chr13 114364328 + 65910905 65911433 L1PA8 5853 + 5327 5853 36253 62 0 8 167 1 0 49 8 6 52 4 0 8 1 0 61 2 1 15 5 4 93 chain 29781 chr13 114364328 + 65914012 65914441 MLT2A1 477 + 1 477 42258 139 11 12 16 1 5 21 0 3 45 2 3 135 4 43 34 1 0 20 chain 4957 chr13 114364328 + 65971331 65971407 MLT1B 390 + 287 371 85852 9 6 0 51 0 14 10 chain 13428 chr13 114364328 + 65976820 65977033 THE1B 368 + 134 356 64421 40 1 0 24 35 45 113 chain 32371 chr13 114364328 + 65991840 65992269 LOR1b 457 + 8 457 40060 21 0 11 9 1 0 95 4 0 108 0 14 191 chain 76161 chr13 114364328 + 65993948 65994783 L1PA4 6152 + 4371 5205 22523 180 1 0 654 chain 10456 chr13 114364328 + 66009698 66010880 LTR12C 1709 + 773 1709 69508 60 38 285 39 977 484 68 chain 262831 chr13 114364328 + 66023464 66026385 L1PA3long 6157 + 3230 6155 7881 1130 0 4 275 1 0 110 1 0 459 0 1 96 1 2 848 chain 13077 chr13 114364328 + 66034660 66034803 L1PA3long 6157 + 5407 5550 64972 143 chain 55741 chr13 114364328 + 66034804 66035411 L1PA3long 6157 + 5550 6157 27649 607 chain 3575 chr13 114364328 + 66067940 66067994 MER2 342 + 267 322 94618 27 3 4 24 chain 37859 chr13 114364328 + 66072257 66072783 MER41C 542 + 17 526 36168 32 0 1 102 1 0 158 7 8 17 19 1 190 chain 5186 chr13 114364328 + 66079877 66079976 ERVL-B4-int 2334 + 1201 1301 84751 43 21 22 35 chain 6018 chr13 114364328 + 66162887 66162957 MSTB 430 + 360 430 81005 70 chain 15475 chr13 114364328 + 66204708 66204917 L1PA8 5853 + 5647 5853 61692 30 1 0 62 3 2 19 1 0 93 chain 65358 chr13 114364328 + 66418501 66419347 L1P3 4156 + 3215 4104 25095 179 0 2 98 1 0 132 0 1 225 10 50 137 6 7 58 chain 313850 chr13 114364328 + 66419361 66423515 L1P3 4156 + 4 4139 6538 176 38 39 22 26 25 54 1 0 68 4 0 21 10 4 12 7 8 54 8 0 30 10 9 316 13 14 222 14 4 186 9 11 5 1 0 74 0 1 264 0 5 259 0 3 208 0 15 282 6 7 49 19 22 164 2 0 109 0 3 344 0 4 402 2 0 32 1 0 56 0 1 49 4 5 39 4 3 186 15 1 126 6 0 110 2 0 7 2 1 24 chain 43696 chr13 114364328 + 66479527 66480097 LTR12 884 + 0 634 32325 25 1 0 52 1 67 196 1 2 35 2 0 257 chain 61858 chr13 114364328 + 66480587 66481312 L1PA7 6471 + 5737 6470 25900 447 0 6 266 0 2 12 chain 102084 chr13 114364328 + 66560882 66562168 LTR12C 1709 + 0 1709 18055 291 5 7 40 0 43 75 8 5 189 0 278 184 1 0 4 4 2 106 0 4 188 0 102 191 chain 14126 chr13 114364328 + 66601820 66602022 Tigger3b 1229 + 135 342 63414 150 22 27 30 chain 263430 chr13 114364328 + 66613712 66617944 MER61-int 3695 + 10 3695 7867 20 4 0 20 1 0 6 0 1 42 1 0 172 2 1 46 5 6 35 0 4 47 4 5 30 0 1 89 11 8 99 2 0 6 0 1 130 0 3 85 3 2 90 608 22 269 0 1 157 0 1 64 1 6 90 8 12 38 0 5 250 0 1 117 0 1 132 11 7 10 3 8 60 16 11 7 0 1 108 17 28 400 1 0 88 12 11 18 5 0 16 1 0 126 1 2 65 0 1 58 7 8 197 1 0 275 0 9 11 3 14 31 chain 113644 chr13 114364328 + 66621765 66623198 LTR12C 1709 + 0 1709 16598 464 0 2 25 3 1 158 0 278 184 10 6 101 5 9 75 11 10 4 0 1 223 1 0 86 1 0 82 chain 557937 chr13 114364328 + 66737482 66743507 L1PA2 6032 + 0 6032 247 614 0 4 700 0 1 878 0 1 370 0 1 3463 chain 21406 chr13 114364328 + 66754117 66754385 L1PA7 6471 + 6204 6468 54628 94 5 1 169 chain 196950 chr13 114364328 + 66776112 66778290 L1PA3long 6157 + 3978 6155 9813 1586 7 6 585 chain 90845 chr13 114364328 + 66870394 66871398 L1PA3long 6157 + 5153 6157 19531 1004 chain 44735 chr13 114364328 + 67000000 67000491 L1PA3long 6157 + 5665 6157 31732 342 0 1 149 chain 202262 chr13 114364328 + 67026347 67028578 L1PA3long 6157 + 3928 6157 9628 994 3 0 901 0 1 333 chain 34749 chr13 114364328 + 67130449 67130952 LTR46 455 + 0 455 38189 188 0 1 4 55 11 104 1 0 104 4 0 43 chain 10854 chr13 114364328 + 67138442 67138787 MER51B 395 + 2 387 68769 38 7 26 25 50 0 24 8 64 17 76 0 10 22 113 68 chain 7277 chr13 114364328 + 67274636 67274728 L1MA5 2750 + 2539 2630 76741 25 1 0 66 chain 30438 chr13 114364328 + 67337881 67338275 MLT2A1 477 + 0 385 41639 113 1 2 53 6 3 194 7 0 20 chain 4809 chr13 114364328 + 67380529 67380596 LTR1B 797 + 677 741 86653 31 3 0 33 chain 40059 chr13 114364328 + 67397252 67397714 LTR2 463 + 0 463 34613 367 0 1 95 chain 502681 chr13 114364328 + 67398396 67405442 HERVE_a-int 7009 + 135 7008 3037 21 3 0 28 13 11 57 18 14 24 1 0 4 1 0 7 1 0 8 1 0 14 28 21 5 1 0 9 8 6 14 34 0 34 6 4 23 1 0 39 6 5 23 1 0 52 1 0 34 2 1 98 1 0 11 2 1 14 2 1 33 1 0 13 1 0 52 2 0 27 1 0 63 4 3 27 12 10 71 2 1 32 1 0 39 2 0 15 1 0 52 1 0 21 5 4 11 8 6 14 4 0 21 1 0 3 1 0 16 1 0 22 1 0 5 1 0 7 1 0 10 1 0 6 1 0 4 1 0 56 3 1 57 1 0 23 1 0 11 8 7 113 1 0 18 2 1 18 4 3 10 1 0 18 1 0 10 2 1 4 1 0 18 1 0 43 1 0 38 1 0 62 1 0 38 1 0 6 2 1 32 2 1 44 1 0 24 1 0 15 1 0 25 1 0 12 1 0 94 3 2 24 6 4 29 37 30 8 1 0 144 1 0 14 2 1 37 1 0 167 2 1 153 1 9 86 0 1 232 0 17 492 1 0 392 0 2 113 81 81 624 12 11 5 0 1 151 0 1 217 1 3 151 9 0 113 1 0 27 2 1 8 1 0 74 1 0 6 1 0 42 1 0 14 10 9 55 1 0 32 1 0 12 1 0 258 2 0 98 6 5 14 1 0 3 1 0 54 2 0 23 1 0 12 2 1 76 5 3 138 1 0 43 1 0 25 7 6 10 1 0 16 1 0 5 2 0 7 1 0 37 1 0 21 7 6 41 1 0 4 1 0 23 11 9 54 1 0 37 3 0 54 3 1 21 4 5 31 1 0 6 3 1 13 1 0 17 8 7 27 58 48 24 3 1 4 1 0 13 chain 38659 chr13 114364328 + 67405451 67405914 LTR2 463 + 0 463 35600 53 1 5 162 5 0 148 0 1 94 chain 3084 chr13 114364328 + 67439549 67439582 MER58A 224 + 45 78 98952 33 chain 475957 chr13 114364328 + 67452278 67457994 L1PA6 6164 + 0 6160 3722 70 2 0 438 17 2 190 0 2 495 0 2 1040 0 1 94 21 4 554 10 13 285 2 1 29 1 2 78 1 0 586 0 465 809 0 1 242 0 1 377 0 4 375 chain 13314 chr13 114364328 + 67524616 67524852 L1PB4 2604 + 2300 2531 64597 54 39 35 17 0 1 84 15 13 27 chain 38586 chr13 114364328 + 67525351 67526476 THE1B-int 1605 + 36 615 35654 159 0 14 223 12 37 43 594 9 94 chain 188197 chr13 114364328 + 67563301 67565367 L1PA3long 6157 + 3301 5374 10200 585 0 1 753 0 1 504 0 5 224 chain 501998 chr13 114364328 + 67588347 67594463 L1PA6 6164 + 0 6151 3058 410 0 1 6 11 10 365 17 0 294 4 6 84 21 24 250 2 0 883 12 0 857 0 2 23 1 0 7 6 7 71 1 0 396 0 4 87 0 7 246 19 30 292 0 4 117 0 31 1072 0 2 289 0 1 125 1 10 4 1 0 5 8 0 129 chain 6416 chr13 114364328 + 67623632 67623756 MER1A 529 + 402 529 79617 38 32 35 54 chain 52437 chr13 114364328 + 67676270 67677249 L1PB1 5432 + 4600 5423 28745 25 4 1 26 0 1 210 0 1 41 0 1 192 120 3 15 5 0 23 41 32 49 3 2 9 6 5 44 1 0 16 24 12 19 2 0 4 1 0 13 6 4 22 1 0 20 2 1 13 1 0 14 2 0 5 chain 11242 chr13 114364328 + 67702512 67702821 L1PB1 5432 + 5143 5423 68175 13 14 6 5 0 2 51 37 36 24 1 0 16 2 0 6 19 9 13 2 0 8 1 0 14 2 0 24 1 0 15 7 6 13 1 0 14 1 0 5 chain 29183 chr13 114364328 + 67799075 67799386 AluYb8 318 + 0 309 43076 132 2 0 177 chain 62083 chr13 114364328 + 67825540 67826264 L1PA5 6144 + 5128 5874 25849 48 2 0 83 1 13 327 0 12 263 chain 29463 chr13 114364328 + 67835523 67835956 L1PREC2 3366 + 2442 2864 42653 271 4 0 29 1 0 10 2 0 28 3 4 22 4 3 37 11 7 11 chain 258223 chr13 114364328 + 67845594 67848459 L1PA4 6152 + 3103 5973 8017 80 1 0 1925 0 1 189 0 3 67 0 1 27 0 1 576 chain 30064 chr13 114364328 + 67892808 67893274 L1PA8 5853 + 5394 5853 41990 20 0 1 106 1 0 7 9 10 25 1 0 43 23 21 39 6 5 11 1 0 10 1 0 51 1 0 17 1 0 93 chain 288163 chr13 114364328 + 67898023 67901597 L1PA7 6471 + 2878 6469 7192 218 0 4 112 13 9 275 0 1 6 31 35 6 0 4 25 8 0 1 0 1 284 0 4 129 0 1 88 0 1 124 1 0 465 0 4 280 1 0 19 0 1 313 4 5 48 1 0 279 1 4 62 13 14 274 0 2 493 chain 15004 chr13 114364328 + 67920713 67920898 MER6A 605 + 350 534 62267 85 1 0 99 chain 57166 chr13 114364328 + 67995084 67995708 L1P1 4361 + 2444 3068 27206 624 chain 50612 chr13 114364328 + 68013794 68014573 L1PA11 4918 + 3820 4578 29343 334 0 4 173 13 10 51 0 3 12 6 0 68 2 0 11 7 6 12 66 52 11 2 0 11 chain 3544 chr13 114364328 + 68053471 68053510 Tigger4a 237 - 188 227 94921 39 chain 25106 chr13 114364328 + 68056001 68056346 THE1C 375 + 0 340 49106 180 23 18 142 chain 85899 chr13 114364328 + 68170796 68172063 LTR12C 1709 + 0 1709 20467 228 60 78 30 20 63 63 11 13 91 11 8 70 6 284 184 1 0 96 27 20 60 0 10 25 5 7 110 0 101 86 1 0 82 chain 23815 chr13 114364328 + 68239406 68239716 AluSp 311 + 0 303 51075 49 14 8 71 1 0 175 chain 257175 chr13 114364328 + 68257764 68261389 MER61-int 3695 + 1 3684 8053 29 4 0 16 1 0 152 39 0 74 1 0 92 13 69 33 16 0 73 0 4 140 3 6 157 12 17 109 5 67 187 11 15 56 25 0 230 0 4 136 2 0 279 0 1 5 0 1 259 9 10 19 0 1 181 4 5 337 2 1 78 6 4 13 1 0 38 5 4 114 8 9 125 4 3 10 0 2 5 12 10 169 1 2 22 1 7 241 0 1 61 chain 21020 chr13 114364328 + 68333862 68334128 AluY 311 + 28 291 55094 94 9 6 163 chain 23759 chr13 114364328 + 68337930 68338198 L1PA4 6152 + 5880 6148 51182 268 chain 225437 chr13 114364328 + 68338759 68341255 L1PA3long 6157 + 3654 6153 8873 642 1 0 61 0 4 682 0 1 352 1 0 757 chain 24190 chr13 114364328 + 68388008 68388314 AluYk4 311 + 0 296 50511 115 2 0 10 0 1 4 11 6 147 4 0 13 chain 60627 chr13 114364328 + 68431375 68432254 L1PA8 5853 + 4929 5815 26195 77 1 0 3 4 0 82 16 18 63 5 6 208 0 1 31 0 14 132 1 0 44 2 0 48 37 36 48 2 1 19 1 0 55 chain 3504 chr13 114364328 + 68464007 68464047 L1P4 1494 + 1234 1274 95207 40 chain 9723 chr13 114364328 + 68481359 68481484 MER85 139 + 4 139 70998 86 1 11 38 chain 353003 chr13 114364328 + 68523211 68529290 L1PA7 6471 + 2004 6468 5880 44 15 15 72 0 1 24 1 4 4 0 1 176 3 0 6 0 3 165 0 2 23 1373 32 55 5 1 68 0 1 200 0 2 197 0 4 45 293 0 40 1 4 410 1 2 7 1 0 217 4 0 162 0 2 717 1 2 443 1 2 282 0 1 174 0 4 239 1 2 609 chain 2967 chr13 114364328 + 68524505 68524539 LTR12C 1709 + 983 1017 100217 34 chain 3882 chr13 114364328 + 68524558 68524643 LTR12C 1709 + 795 871 92278 42 31 22 12 chain 6387 chr13 114364328 + 68544228 68544323 L1MA8 2339 + 2169 2256 79719 29 6 0 34 2 0 24 chain 493674 chr13 114364328 + 68616535 68623258 L1PA7 6471 + 5 6459 3318 49 1 0 204 11 219 134 1 0 30 1 0 36 31 32 56 9 5 253 24 0 93 0 1 107 0 1 128 4 0 208 1 0 211 0 4 46 0 15 235 2 1 98 309 0 173 1 0 154 2 0 142 0 1 118 122 4 28 12 3 117 0 3 182 0 4 640 5 1 268 21 0 969 8 1 36 18 0 145 0 1 42 1 0 24 0 1 46 0 5 26 0 5 311 0 3 181 0 3 176 9 9 436 7 9 21 chain 5476 chr13 114364328 + 68653441 68653741 L1MA6 2487 + 2149 2361 83322 58 220 132 22 chain 78906 chr13 114364328 + 68667997 68669095 MER4-int 2692 + 229 1350 21898 121 0 3 250 0 1 12 1 17 63 0 2 27 6 1 189 10 11 46 0 10 8 10 0 153 0 1 35 14 17 115 0 1 4 1 0 17 0 1 16 chain 2856 chr13 114364328 + 68673400 68673430 U2 167 + 0 30 101177 30 chain 27878 chr13 114364328 + 68677170 68677534 THE1C 375 + 0 375 45067 15 0 11 48 0 1 115 1 0 185 chain 19402 chr13 114364328 + 68708410 68708810 MER61D 487 + 0 468 57126 47 22 21 73 19 79 12 1 2 41 3 0 12 20 11 34 2 0 37 32 54 45 chain 5293 chr13 114364328 + 68724771 68724861 MLT2B4 540 + 77 167 84230 49 4 0 8 5 9 24 chain 28224 chr13 114364328 + 68752836 68753240 L1PA7 6471 + 5261 5621 44523 171 0 1 64 50 1 101 0 4 18 chain 19975 chr13 114364328 + 68753241 68753478 L1PA7 6471 + 5621 5858 56438 237 chain 49112 chr13 114364328 + 68753478 68754088 L1PA7 6471 + 5864 6470 29901 597 4 0 9 chain 18618 chr13 114364328 + 68812992 68813504 LTR18B 584 + 7 529 57981 25 0 1 10 129 86 38 33 75 14 27 28 113 30 44 6 2 0 21 1 0 37 2 0 24 chain 48569 chr13 114364328 + 68826050 68826787 L1PA13 3608 + 2764 3488 30093 31 11 12 321 1 0 26 11 10 109 2 0 61 2 1 41 13 10 10 2 0 22 0 1 24 2 0 5 2 0 12 7 6 22 chain 26064 chr13 114364328 + 68866046 68866366 L1PA7 6471 + 5999 6320 47638 59 1 2 260 chain 12869 chr13 114364328 + 68866366 68866514 L1PA7 6471 + 6321 6469 65308 148 chain 37722 chr13 114364328 + 68898311 68898830 LTR10A 586 + 23 574 36259 36 0 8 7 0 1 28 0 21 20 4 3 55 8 9 70 1 2 262 6 7 22 chain 33040 chr13 114364328 + 68912862 68913231 L1PA3long 6157 + 5787 6156 39486 369 chain 20691 chr13 114364328 + 68980526 68980963 L1PA15 4387 + 3932 4357 55509 91 2 4 64 11 14 25 1 0 54 2 1 20 73 65 41 34 27 19 chain 6408 chr13 114364328 + 68999905 68999987 L1PREC2 3366 + 322 404 79642 82 chain 66198 chr13 114364328 + 69031874 69032635 L1PA4 6152 + 5382 6143 24910 394 0 1 232 0 1 71 8 6 56 chain 8237 chr13 114364328 + 69145643 69145777 L1PB1 5432 + 5308 5430 74314 19 2 0 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 18 4 0 8 chain 8936 chr13 114364328 + 69159937 69160107 L1MA3 4352 + 4137 4308 72695 10 0 3 42 8 10 34 9 5 19 0 3 8 1 0 11 1 0 6 1 0 20 chain 10538 chr13 114364328 + 69196687 69196885 LTR7B 505 + 0 495 69340 69 1 40 30 53 311 45 chain 27552 chr13 114364328 + 69206367 69206754 L1PA8 5853 + 5470 5853 45508 94 1 0 42 7 5 59 0 1 67 4 3 19 1 0 93 chain 59913 chr13 114364328 + 69221625 69222368 LTR17 781 + 0 731 26401 8 0 6 105 0 9 170 10 0 28 0 1 93 18 0 311 chain 119357 chr13 114364328 + 69223960 69225336 HERV17-int 4347 + 12 1383 15635 15 1 0 51 1 0 37 2 0 24 1 0 1244 chain 26703 chr13 114364328 + 69226757 69227094 MLT2A2 560 + 0 343 46679 33 0 6 304 chain 42154 chr13 114364328 + 69289179 69289717 MER41A 554 + 14 554 33275 413 0 1 9 4 0 32 2 7 78 chain 3826 chr13 114364328 + 69328859 69328901 MADE1 96 + 1 43 92668 42 chain 75935 chr13 114364328 + 69347291 69348328 L1PA8A 6298 + 5287 6291 22598 202 0 6 14 7 13 46 1 3 398 61 7 139 0 1 50 7 13 112 chain 111607 chr13 114364328 + 69358195 69359452 L1PA5 6144 + 4881 6140 16863 930 0 1 73 0 1 254 chain 47577 chr13 114364328 + 69376281 69376834 L1PA7 6471 + 5910 6463 30450 553 chain 127665 chr13 114364328 + 69398281 69399890 L1PA7 6471 + 2525 4138 14332 105 11 6 198 0 1 28 1 0 4 0 1 246 0 1 47 4 3 402 1 2 192 0 3 17 0 3 258 6 7 89 chain 108909 chr13 114364328 + 69434821 69436076 L1PA5 6144 + 4250 5514 17192 225 0 2 255 0 3 556 0 4 219 chain 30857 chr13 114364328 + 69544057 69544757 L1PB1 5432 + 4770 5423 41262 33 5 12 18 5 6 52 3 9 146 101 68 23 5 7 12 7 3 9 2 0 52 2 1 16 2 1 43 1 0 9 30 18 18 3 1 5 1 0 14 2 0 19 1 0 5 1 0 21 1 0 27 1 0 5 chain 63654 chr13 114364328 + 69552995 69553791 L1PA8A 6298 + 5495 6291 25488 683 1 0 10 1 2 101 chain 18430 chr13 114364328 + 69604968 69605217 LTR8 732 + 16 273 58193 14 0 9 113 7 6 115 chain 72790 chr13 114364328 + 69659863 69660883 MER11A 1151 + 0 1151 23360 57 0 98 134 14 11 43 5 0 45 0 1 50 6 7 33 0 12 23 0 1 17 1 8 20 1 0 108 23 22 107 14 39 26 3 0 223 1 0 66 chain 38940 chr13 114364328 + 69660883 69661408 MER4E 760 + 213 755 35403 68 2 6 84 3 2 6 0 4 99 3 14 157 2 1 101 chain 488940 chr13 114364328 + 69666831 69672959 L1PA6 6164 + 0 6156 3445 137 0 76 22 1 3 280 9 11 38 1 0 177 0 3 40 0 17 123 1 5 245 19 22 55 2 1 358 1 2 81 11 1 336 0 1 168 10 12 110 2 1 485 4 9 286 2 0 65 0 2 18 0 2 115 4 7 630 3 4 1180 109 6 158 0 4 10 0 3 6 0 1 76 0 12 611 1 0 102 5 6 24 0 2 7 chain 28946 chr13 114364328 + 69698074 69698390 AluYb8 318 + 0 314 43411 132 2 0 182 chain 34069 chr13 114364328 + 69698405 69699243 L1PB1 5432 + 4792 5418 38656 222 0 2 39 238 59 24 1 0 8 1 0 4 15 11 7 2 0 9 3 0 11 2 0 29 7 6 13 1 0 44 1 0 22 18 6 19 2 0 5 1 0 10 6 4 24 1 0 34 1 0 14 chain 7045 chr13 114364328 + 69703155 69703298 Tigger3b 1229 + 34 178 77460 57 43 44 43 chain 55867 chr13 114364328 + 69736004 69736881 L1PB1 5432 + 4434 5277 27600 192 3 0 136 6 4 32 18 18 166 0 1 113 10 9 9 21 0 24 1 0 6 1 0 12 28 22 42 16 16 41 chain 461744 chr13 114364328 + 69782179 69787854 L1PA4 6152 + 4 5338 4089 455 10 11 110 1 0 263 18 1 29 0 2 193 1 2 168 1 0 270 4 0 232 4 0 933 320 0 318 4 0 83 0 2 126 1 2 573 0 1 580 0 2 106 5 1 815 0 4 52 chain 37283 chr13 114364328 + 69802423 69802886 LTR2 463 + 0 463 36559 255 1 0 107 12 13 88 chain 48520 chr13 114364328 + 69811754 69812294 L1PA5 6144 - 2853 3393 30084 540 chain 102911 chr13 114364328 + 69812294 69813452 L1PA5 6144 + 4953 6112 17963 240 0 1 77 0 4 175 4 0 662 chain 11957 chr13 114364328 + 69833885 69834230 L1PB1 5432 + 5114 5423 66906 15 6 5 8 1 0 14 2 0 3 2 0 9 21 19 27 8 7 10 6 5 44 1 0 16 4 10 9 22 0 11 11 8 12 2 0 24 1 0 23 1 0 6 1 0 20 1 0 4 chain 29560 chr13 114364328 + 69853145 69853521 THE1C 375 + 0 375 42538 349 1 0 26 chain 21602 chr13 114364328 + 69861668 69861965 AluSp 311 + 1 282 54349 44 10 12 63 18 0 162 chain 10926 chr13 114364328 + 69873641 69873759 L1PA7 6471 + 6339 6457 68656 118 chain 32553 chr13 114364328 + 69902526 69902907 L1PA4 6152 + 5761 6143 39909 136 0 1 245 chain 93492 chr13 114364328 + 69915070 69916116 L1PA4 6152 + 4467 5517 19115 883 0 4 163 chain 148141 chr13 114364328 + 70029421 70031122 L1P2 5180 + 1810 3522 12474 397 0 4 178 0 6 308 0 1 818 chain 52077 chr13 114364328 + 70072969 70073568 L1PA5 6144 + 5542 6144 28854 29 0 1 143 0 2 427 chain 13818 chr13 114364328 + 70132183 70132470 L1PA16 3655 + 3305 3592 63849 35 24 23 53 29 19 69 2 12 23 10 14 24 3 0 15 chain 101003 chr13 114364328 + 70145794 70146924 L1PA3long 6157 + 5028 6157 18184 279 2 1 849 chain 77376 chr13 114364328 + 70166170 70167044 L1PA4 6152 + 4644 5519 22225 187 0 1 258 4 0 208 0 4 217 chain 434072 chr13 114364328 + 70208978 70213922 L1PA4 6152 + 263 5187 4684 108 0 2 87 6 0 120 1 0 453 0 1 1432 16 1 34 5 0 1038 1 0 326 0 1 485 0 4 832 chain 61307 chr13 114364328 + 70289737 70290477 L1PA7 6471 + 5716 6461 26032 20 0 1 360 0 3 119 0 1 241 chain 3528 chr13 114364328 + 70298837 70298887 MADE1 96 + 45 96 95030 25 1 2 24 chain 12883 chr13 114364328 + 70331791 70332093 MLT2A2 560 + 0 278 65284 16 0 1 29 13 0 75 90 90 43 12 0 24 chain 7122 chr13 114364328 + 70346967 70347079 L1MA4 2864 + 2535 2645 77192 69 7 6 24 1 0 11 chain 6067 chr13 114364328 + 70389871 70389937 L1PA8 5853 + 5780 5846 80841 66 chain 22834 chr13 114364328 + 70407027 70407402 MLT2A1 477 + 0 385 52613 46 0 2 60 41 45 16 1 5 13 25 25 173 chain 3230 chr13 114364328 + 70433430 70433468 L1MDa 1598 + 667 705 97664 38 chain 26657 chr13 114364328 + 70442130 70442542 L1PA8 5853 + 5445 5853 46750 73 0 4 36 12 11 41 9 7 58 15 13 52 2 1 19 5 4 83 1 0 6 chain 6575 chr13 114364328 + 70459465 70459545 U6 107 + 2 82 79052 80 chain 315150 chr13 114364328 + 70459546 70463565 L1PA7 6471 + 2451 6470 6500 190 5 4 23 1 0 4 0 1 34 0 1 5 1 0 298 1 4 531 5 9 51 0 1 15 0 1 207 1 0 155 2 1 106 2 0 5 0 2 15 2 1 78 0 1 194 5 6 177 1 2 5 0 1 370 5 0 36 10 7 222 0 1 78 1 0 4 0 2 322 8 7 444 0 1 247 0 1 51 2 1 92 3 0 5 chain 152009 chr13 114364328 + 70497883 70499621 L1PA5 6144 + 4395 6144 12225 1335 1 12 402 chain 31592 chr13 114364328 + 70547107 70547656 L1PB 1623 + 1053 1576 40676 253 0 8 131 142 108 23 chain 38395 chr13 114364328 + 70564928 70565399 MER9a1 513 + 0 470 35788 170 0 1 190 1 3 5 2 0 87 2 0 14 chain 12315 chr13 114364328 + 70618250 70618405 L1PA16 3655 + 2913 3070 66270 4 1 0 93 0 3 57 chain 23206 chr13 114364328 + 70718913 70719270 THE1A 353 + 0 353 52073 15 2 0 32 0 1 35 46 45 70 2 0 155 chain 30460 chr13 114364328 + 70814193 70814693 MSTA-int 1630 + 1035 1629 41619 122 32 125 71 66 67 209 chain 19085 chr13 114364328 + 70838324 70838690 THE1B 368 + 0 368 57460 15 2 0 32 4 5 10 71 73 39 17 18 176 chain 18804 chr13 114364328 + 70911042 70911280 L1PA5 6144 + 5904 6144 57772 91 8 9 127 1 2 11 chain 32797 chr13 114364328 + 70926609 70927031 L1PA7 6471 + 6045 6469 39674 59 5 6 26 0 1 98 0 2 43 0 1 178 3 0 10 chain 2944 chr13 114364328 + 71042650 71042683 X6B_LINE 212 + 127 160 100468 33 chain 255991 chr13 114364328 + 71129225 71132382 L1PA7 6471 + 1214 4349 8092 135 10 9 26 2 3 446 0 2 800 1 3 57 2 0 205 16 0 232 1 0 220 7 3 141 2 1 48 12 16 435 10 4 349 chain 101468 chr13 114364328 + 71177315 71178442 L1PA3long 6157 + 5035 6157 18133 100 4 0 249 1 0 773 chain 96385 chr13 114364328 + 71184296 71185478 L1P2 5180 + 2 1182 18726 18 0 1 129 1 0 43 2 1 40 0 2 11 3 2 266 1 2 46 1 0 224 1 0 6 1 0 389 chain 153967 chr13 114364328 + 71185486 71187285 L1PA6 6164 + 4356 6160 12112 348 0 7 178 0 1 418 2 0 523 0 1 102 0 1 89 1 0 130 2 0 6 chain 3782 chr13 114364328 + 71255740 71255784 Tigger3a 397 + 208 252 92982 44 chain 44790 chr13 114364328 + 71422977 71423598 L1PA8 5853 + 5237 5850 31710 327 1 0 46 2 0 68 21 11 6 0 7 38 2 1 19 1 0 90 chain 19424 chr13 114364328 + 71449442 71449689 L1PA8 5853 + 5608 5852 57109 70 2 1 61 2 1 19 1 0 92 chain 3731 chr13 114364328 + 71810766 71810845 MER127 228 + 117 180 93394 9 1 0 5 1 2 30 16 0 17 chain 33763 chr13 114364328 + 71837652 71838027 L1PA2 6032 + 5505 5892 38878 57 2 0 40 0 14 276 chain 8188 chr13 114364328 + 71885753 71885871 MER20 218 + 91 210 74441 64 8 9 46 chain 66888 chr13 114364328 + 71893711 71894473 L1PA4 6152 + 5386 6143 24723 239 6 0 272 0 1 245 chain 4909 chr13 114364328 + 71932463 71932525 MSTB2 466 + 43 106 86115 46 0 1 16 chain 28198 chr13 114364328 + 71932590 71932898 AluYb8 318 + 0 304 44568 126 4 0 178 chain 83427 chr13 114364328 + 71952661 71953582 L1PA3long 6157 + 5227 6149 20926 396 0 1 525 chain 10318 chr13 114364328 + 71967194 71967328 L1PA8 5853 + 5721 5853 69769 23 2 1 15 1 0 93 chain 16796 chr13 114364328 + 71988496 71988731 MER44A 345 + 105 338 60033 148 2 1 80 1 0 4 chain 13155 chr13 114364328 + 72061381 72061690 L1M1 2793 + 2409 2678 64844 32 1 0 13 51 47 51 35 1 70 6 5 17 1 2 26 1 0 5 chain 494350 chr13 114364328 + 72062125 72068392 L1PA7 6471 + 5 6461 3300 351 0 1 5 1 0 49 4 1 103 0 1 82 34 35 88 19 142 200 0 14 264 0 1 4 1 0 164 3 21 58 4 5 460 6 9 175 1 0 52 0 1 58 2 0 166 21 23 71 0 1 25 6 0 1079 0 36 239 1 0 270 5 1 368 0 1 189 8 7 767 13 22 10 0 4 327 22 13 351 10 11 131 chain 275811 chr13 114364328 + 72083690 72086808 L1PA5 6144 + 3008 6144 7556 77 0 1 260 0 1 1046 0 15 766 1 0 532 0 2 436 chain 3853 chr13 114364328 + 72102433 72102608 MER53 195 + 0 178 92477 20 114 117 41 chain 82576 chr13 114364328 + 72116259 72117201 L1PA3long 6157 + 5211 6157 21107 77 1 0 412 0 5 44 10 4 381 0 6 17 chain 48708 chr13 114364328 + 72121558 72122212 PABL_A 660 + 0 660 30046 62 5 0 6 3 8 26 0 1 24 1 0 151 8 9 4 0 1 30 0 4 334 chain 15950 chr13 114364328 + 72168266 72168490 LTR39 781 + 46 269 61091 136 17 16 71 chain 3570 chr13 114364328 + 72263603 72263641 L1PA7 6471 + 6275 6313 94658 38 chain 13474 chr13 114364328 + 72263644 72263799 L1PA7 6471 + 6317 6470 64349 142 2 0 11 chain 19085 chr13 114364328 + 72293621 72293842 L1PA7 6471 + 6091 6312 57459 221 chain 13121 chr13 114364328 + 72293847 72293998 L1PA7 6471 + 6316 6467 64897 151 chain 19919 chr13 114364328 + 72319573 72319938 THE1D 372 + 0 360 56496 12 0 3 17 1 0 24 10 1 17 11 12 86 39 41 12 18 17 118 chain 87747 chr13 114364328 + 72322886 72323961 L1PA6 6164 + 5056 6145 20086 66 9 11 4 1 0 159 0 4 18 0 6 180 0 3 638 chain 34799 chr13 114364328 + 72341261 72341699 THE1B-int 1605 + 1149 1592 38163 59 0 1 215 3 8 5 1 0 155 chain 7860 chr13 114364328 + 72393617 72393738 L1MA8 2339 + 1776 1890 75224 13 3 0 47 9 5 49 chain 22272 chr13 114364328 + 72448784 72449099 THE1D 372 + 58 372 53447 80 4 0 28 14 22 12 5 0 172 chain 72109 chr13 114364328 + 72526063 72526870 L1PA5 6144 + 5334 6144 23511 11 0 3 796 chain 15618 chr13 114364328 + 72531440 72531820 L1PB1 5432 + 5090 5427 61510 11 1 6 7 13 0 20 1 0 13 2 0 11 5 1 9 6 4 48 2 1 16 1 0 42 68 52 15 2 0 24 1 0 21 1 0 13 1 0 13 1 0 5 2 0 5 chain 25177 chr13 114364328 + 72548263 72548607 L1PB4 2604 + 2215 2552 48994 21 5 1 137 4 2 36 1 0 140 chain 545153 chr13 114364328 + 72610252 72616279 L1PA3long 6157 + 4 6154 1025 414 6 0 349 9 137 142 0 1 2130 1 0 1267 0 1 1709 chain 69110 chr13 114364328 + 72675558 72676321 L1PA4 6152 + 4756 5520 24194 432 0 1 331 chain 14264 chr13 114364328 + 72692315 72692591 MSTA 426 + 18 300 63247 53 27 28 60 6 10 30 10 11 37 1 0 4 17 18 31 chain 3229 chr13 114364328 + 72716214 72716253 MSTA 426 + 387 426 97673 39 chain 4250 chr13 114364328 + 72719679 72719741 MER5C 305 + 96 160 89825 34 1 3 27 chain 21002 chr13 114364328 + 72742685 72743218 L1MA7 2200 + 1722 2167 55115 54 6 5 17 51 3 148 63 49 53 12 1 22 68 55 30 1 0 8 chain 24303 chr13 114364328 + 72751150 72751475 L1MA5 2750 + 2325 2660 50324 42 0 12 183 1 0 69 2 1 28 chain 64461 chr13 114364328 + 72868911 72869626 L1PA3long 6157 + 5442 6157 25317 715 chain 16948 chr13 114364328 + 72881236 72884081 L1MA3 4352 + 2327 4307 59862 199 2526 1665 69 2 0 22 1 0 6 1 0 19 chain 3304 chr13 114364328 + 72882944 72882982 L1MA3 4352 - 635 673 96978 38 chain 164473 chr13 114364328 + 72898866 72901390 L1PB1 5432 + 2551 4801 11459 38 0 4 144 2 1 95 8 9 147 0 1 154 1 2 36 0 1 29 5 11 77 9 20 64 0 1 4 1 0 338 2 6 163 0 1 251 0 1 55 0 2 171 3 4 77 350 35 53 1 0 63 5 12 74 8 10 96 chain 4347 chr13 114364328 + 72926130 72926193 MER33 330 + 253 324 89194 42 1 9 20 chain 50316 chr13 114364328 + 72947638 72948234 L1PA7 6471 + 5862 6467 29446 240 0 2 32 0 6 222 0 3 92 2 0 8 chain 51322 chr13 114364328 + 72956833 72957653 L1PB1 5432 + 4633 5422 29114 74 0 1 97 4 3 4 0 1 91 0 2 197 3 0 10 2 1 24 1 0 8 1 0 12 4 1 9 3 1 51 24 22 39 1 0 15 3 0 15 27 16 5 1 0 14 2 0 24 1 0 20 1 0 14 1 0 18 chain 22881 chr13 114364328 + 73034164 73034444 AluSp 311 + 10 287 52533 101 1 0 136 2 0 40 chain 28321 chr13 114364328 + 73124320 73124620 AluYa5 310 + 0 299 44382 132 1 0 167 chain 53950 chr13 114364328 + 73127270 73128085 Tigger1 2417 + 1591 2417 28247 47 41 42 252 4 3 49 0 2 140 10 20 25 20 22 62 3 0 162 chain 118964 chr13 114364328 + 73159088 73160909 L1PA15 4387 + 2557 4366 15712 57 9 8 4 0 1 503 78 85 60 5 3 30 1 0 30 0 1 41 0 2 65 8 9 43 5 10 55 0 1 227 0 1 20 24 18 60 3 1 40 1 0 83 0 1 88 2 1 26 1 0 54 24 19 13 1 0 48 8 5 44 3 1 12 11 6 22 1 0 11 chain 24565 chr13 114364328 + 73181064 73181359 AluSg7 307 + 10 302 49914 38 4 0 4 0 1 249 chain 24691 chr13 114364328 + 73181359 73181835 Tigger3b 1229 + 782 1154 49752 87 7 11 74 2 0 27 145 9 107 0 30 27 chain 9653 chr13 114364328 + 73191535 73191670 U4 144 + 8 144 71154 34 7 8 94 chain 8032 chr13 114364328 + 73227146 73227258 HY1 111 + 0 111 74800 9 2 1 101 chain 9367 chr13 114364328 + 73270342 73270455 MLT1A0 366 + 237 350 71773 113 chain 4876 chr13 114364328 + 73333011 73333066 L1PA16 3655 + 3523 3578 86283 55 chain 262706 chr13 114364328 + 73441017 73445242 MER61-int 3695 + 1 3652 7889 29 4 0 20 1 0 222 1 0 32 14 12 94 1 2 55 3 1 98 24 25 53 1 0 538 1 0 45 0 3 20 0 1 73 0 1 109 0 1 67 1 2 24 315 26 67 6 7 45 0 1 113 0 1 71 289 0 17 1 2 251 26 9 79 0 3 167 1 0 37 0 1 190 4 3 147 1 0 88 25 24 276 2 0 6 40 56 132 3 0 8 1 0 109 10 14 27 0 6 141 chain 86680 chr13 114364328 + 73468843 73470068 L1PB2 3958 + 2618 3832 20276 223 0 1 25 1 0 57 1 0 38 16 17 224 11 14 86 1 0 4 2 0 56 1 0 14 5 0 10 0 1 51 2 0 12 3 0 5 10 8 51 1 8 15 1 0 79 1 0 62 1 0 70 2 0 25 2 1 57 chain 3504 chr13 114364328 + 73538147 73538187 MER45A 178 + 105 145 95215 40 chain 3757 chr13 114364328 + 73569728 73569768 L1MB2 1706 + 1639 1679 93154 40 chain 134893 chr13 114364328 + 73574307 73576226 SVA_F 1814 + 335 1814 13547 579 49 0 33 4 19 172 406 0 676 chain 4204 chr13 114364328 + 73574886 73574935 SVA_F 1814 + 978 1105 54461 37 0 78 12 chain 8813 chr13 114364328 + 73575146 73575240 SVA_F 1814 + 1139 1233 65709 94 chain 5592 chr13 114364328 + 73575240 73575323 SVA_F 1814 + 1057 1140 63675 83 chain 16478 chr13 114364328 + 73575363 73575550 SVA_F 1814 + 1080 1265 57706 97 1 0 10 1 0 78 chain 4495 chr13 114364328 + 73580467 73580536 MADE1 96 - 0 96 88360 39 5 32 25 chain 549763 chr13 114364328 + 73640527 73646551 L1PA2 6032 + 12 6032 763 60 0 1 184 1 0 161 6 0 389 0 4 1980 1 0 2477 1 0 764 chain 49861 chr13 114364328 + 73723767 73724384 L1PA8 5853 + 5063 5686 29616 19 0 2 109 0 3 33 0 3 164 1 0 125 0 2 37 3 2 46 2 0 78 chain 3962 chr13 114364328 + 73768149 73768192 MIR 256 + 84 127 91679 43 chain 2795 chr13 114364328 + 73841721 73841753 MADE1 96 - 64 96 101674 32 chain 2987 chr13 114364328 + 73993705 73993754 MER63A 208 + 0 48 99999 25 5 4 19 chain 12947 chr13 114364328 + 74143740 74143915 MER47A 366 + 65 251 65184 62 0 12 80 1 0 32 chain 23084 chr13 114364328 + 74164764 74165157 L1MA3 4352 + 3937 4311 52231 156 27 15 5 3 0 87 14 18 17 4 0 23 2 0 20 5 4 6 1 0 23 chain 5519 chr13 114364328 + 74233841 74233929 L1MC 810 + 187 274 83160 66 7 6 15 chain 4665 chr13 114364328 + 74261043 74261115 L1PB1 5432 + 5346 5415 87457 24 1 0 23 2 1 10 1 0 11 chain 21730 chr13 114364328 + 74270970 74271268 MER1B 344 + 42 343 54193 174 4 0 49 13 20 58 chain 433783 chr13 114364328 + 74346911 74352722 L1PA8 5853 + 50 5853 4691 22 1 0 5 7 5 13 49 13 49 10 12 63 36 31 35 42 28 48 1 2 59 6 9 208 29 21 450 1 2 74 16 39 220 1 4 44 1 0 145 1 0 86 0 17 257 11 9 255 5 9 197 0 4 372 25 26 6 1 0 37 0 1 34 0 1 211 1 4 210 1 0 324 1 0 757 0 1 252 0 22 262 5 4 52 0 2 10 21 0 238 0 4 231 0 1 17 1 0 46 2 0 70 1 0 8 2 1 53 1 0 18 1 0 93 chain 560096 chr13 114364328 + 74426326 74432354 L1HS 6032 + 6 6032 169 693 7 0 886 0 1 492 0 2 111 3 0 1627 0 1 2149 0 4 60 chain 21166 chr13 114364328 + 74456072 74456321 L1PA8A 6298 + 6041 6290 54928 249 chain 256424 chr13 114364328 + 74492831 74496097 L1PA5 6144 + 3192 6144 8075 71 0 3 429 0 1 174 5 4 821 318 0 56 2 1 1058 0 1 236 1 2 95 chain 533025 chr13 114364328 + 74536455 74542369 L1PA3long 6157 + 5 6155 1707 148 0 1 316 0 91 213 6 130 1488 0 4 313 0 5 1441 0 3 190 0 3 959 0 4 693 0 1 147 chain 27370 chr13 114364328 + 74545547 74545837 AluYd8 298 + 0 290 45737 290 chain 5274 chr13 114364328 + 74548331 74548398 MSTC 436 + 45 112 84313 67 chain 26695 chr13 114364328 + 74600692 74601009 L1PA7 6471 + 5065 5382 46692 317 chain 3399 chr13 114364328 + 74619341 74619379 L1MA4 2864 + 2766 2804 96071 38 chain 18873 chr13 114364328 + 74630729 74631075 THE1B 368 + 0 368 57677 106 10 11 45 62 81 43 0 2 14 10 10 56 chain 35671 chr13 114364328 + 74649712 74650213 MLT2A2 560 + 0 512 37615 124 7 6 4 0 1 33 13 12 220 2 13 72 4 5 22 chain 19813 chr13 114364328 + 74658245 74658534 L1PB 1623 + 1172 1440 56658 106 1 0 4 0 1 26 23 1 70 1 2 58 chain 2670 chr13 114364328 + 74717181 74717219 L1ME1 1623 + 1455 1492 102602 29 1 0 8 chain 118764 chr13 114364328 + 74718211 74719669 LTR12C 1709 + 2 1707 15758 193 1 2 190 0 3 99 0 1 337 5 247 36 1 0 8 2 0 100 6 10 393 5 4 82 chain 3608 chr13 114364328 + 74797842 74797882 MER53 195 - 131 171 94350 40 chain 104451 chr13 114364328 + 74799993 74801133 L1PA3long 6157 + 5017 6157 17763 1140 chain 370400 chr13 114364328 + 74804239 74808883 HERVL-int 5654 + 1024 5644 5645 399 0 1 353 1 8 285 0 9 100 0 2 369 6 7 265 0 5 58 0 1 247 0 2 139 0 7 6 4 2 750 49 6 38 0 1 5 0 1 661 0 9 7 3 0 272 23 14 170 20 7 131 1 4 5 3 0 274 chain 29012 chr13 114364328 + 74808893 74809282 MLT2A1 477 + 0 399 43304 92 0 11 65 5 2 11 0 1 22 0 1 88 0 1 4 5 4 97 chain 24975 chr13 114364328 + 74819368 74819831 MLT2A2 560 + 0 560 49322 180 1 0 120 127 225 35 chain 92673 chr13 114364328 + 74854109 74855179 L1PA5 6144 + 5075 6144 19241 108 0 1 299 0 3 231 14 9 418 chain 42531 chr13 114364328 + 74858977 74859600 L1PA8 5853 + 5237 5853 33042 142 2 0 185 1 0 12 0 1 31 2 0 16 0 1 36 35 36 5 3 0 38 2 1 19 2 1 92 chain 4824 chr13 114364328 + 74928136 74928216 MADE1 96 - 1 96 86575 36 9 23 23 0 1 12 chain 302963 chr13 114364328 + 74933140 74936884 L1PA6 6164 + 2271 6042 6765 16 1 0 160 1 0 135 0 4 604 6 1 333 11 22 382 3 4 34 14 30 219 0 2 148 0 4 73 0 1 236 1 0 104 6 0 6 0 6 352 27 11 397 3 9 134 6 5 271 0 6 23 2 3 36 chain 5038 chr13 114364328 + 74956894 74957126 MLT1B 390 + 33 253 85476 12 9 6 5 0 1 38 11 7 20 117 111 20 chain 504266 chr13 114364328 + 74959201 74965595 L1PA7 6471 + 57 6470 2990 114 0 9 229 40 17 461 0 1 113 0 1 4 1 0 259 16 9 472 0 1 397 1 0 19 3 8 5 3 0 391 0 12 30 34 23 73 1 24 342 7 0 24 4 8 28 0 9 101 0 4 190 0 5 36 1 3 17 4 1 26 4 0 57 0 2 22 3 2 402 2 0 664 0 2 275 1 0 35 0 1 53 3 0 69 0 2 56 3 0 457 4 5 261 0 1 120 0 2 296 2 3 141 0 1 18 chain 125321 chr13 114364328 + 75017773 75019341 L1PA8 5853 + 4282 5849 14651 82 1 0 223 1 9 413 2 0 275 12 13 267 1 0 44 2 0 70 2 1 10 1 0 51 2 1 19 2 1 88 chain 25212 chr13 114364328 + 75028172 75028528 THE1B 368 + 0 366 48921 44 6 21 103 1 0 14 14 10 174 chain 114666 chr13 114364328 + 75028530 75030078 THE1B-int 1605 + 0 1590 16439 25 3 0 5 9 12 217 0 1 172 33 50 327 15 16 23 0 23 386 0 2 242 8 5 36 0 1 47 chain 25470 chr13 114364328 + 75030093 75030446 THE1B 368 + 0 368 48520 44 8 23 21 0 1 85 5 4 190 chain 65284 chr13 114364328 + 75035710 75036723 L1PA13 3608 + 2545 3549 25110 80 1 14 47 1 3 245 0 2 164 5 9 23 2 0 29 1 0 101 0 1 10 2 0 44 31 30 49 2 0 48 2 0 4 2 0 20 1 0 20 0 3 6 18 7 14 1 0 4 23 14 13 chain 186449 chr13 114364328 + 75079550 75081624 L1PA3long 6157 + 4086 6157 10279 206 1 3 604 12 7 1251 chain 9523 chr13 114364328 + 75109586 75109693 U6 107 + 0 107 71425 107 chain 368624 chr13 114364328 + 75109694 75114283 L1PA8A 6298 + 1374 6292 5686 248 5 0 36 0 1 24 8 16 154 0 1 366 3 4 63 0 332 123 0 1 307 0 1 347 7 1 48 5 8 243 16 0 180 0 1 209 2 0 84 0 2 476 0 1 139 0 4 31 1 0 170 1 0 298 15 0 197 4 1 65 0 3 617 10 29 87 chain 15689 chr13 114364328 + 75122673 75122852 L1HS 6032 + 5860 6032 61412 15 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75337943 MADE1 96 + 45 89 92169 44 chain 10792 chr13 114364328 + 75413459 75413612 MER30 238 + 68 238 68875 39 4 0 8 0 23 87 2 0 13 chain 19739 chr13 114364328 + 75448338 75448583 AluSp 311 + 53 297 56742 79 2 0 22 0 1 142 chain 37631 chr13 114364328 + 75464178 75464677 MER9a3 513 + 0 513 36319 18 0 2 91 0 1 67 12 13 64 1 0 37 2 12 129 0 1 78 chain 10646 chr13 114364328 + 75519056 75519352 LTR12C 1709 + 860 996 69135 101 160 0 35 chain 1564 chr13 114364328 + 75519243 75519276 LTR12C 1709 + 650 683 86004 33 chain 90194 chr13 114364328 + 75721849 75723162 L1PB1 5432 + 4109 5419 19649 334 0 6 167 2 6 17 0 1 172 2 1 107 8 38 13 0 1 131 1 0 9 9 2 24 1 0 7 0 2 9 2 0 3 2 0 7 14 12 41 1 0 17 1 0 45 1 0 15 1 0 4 18 8 18 26 21 23 1 0 21 1 0 13 10 0 15 chain 16864 chr13 114364328 + 75775205 75775617 L1P4 1494 + 1034 1443 59955 68 11 12 85 0 1 51 121 108 26 11 13 12 2 0 3 1 0 8 0 9 13 chain 22197 chr13 114364328 + 75901060 75901442 THE1D 372 + 0 372 53561 46 29 0 15 4 14 22 7 8 62 1 2 4 1 0 19 0 2 26 20 26 126 chain 47663 chr13 114364328 + 75910176 75910746 PABL_A 660 + 4 575 30416 298 0 2 68 1 0 203 chain 287343 chr13 114364328 + 75954893 75958064 L1PA3long 6157 + 2982 6157 7217 1375 0 4 1796 chain 23133 chr13 114364328 + 75961549 75961805 L1PA3long 6157 + 5898 6155 52169 111 0 1 145 chain 56569 chr13 114364328 + 76078475 76079240 L1PA8 5853 + 4474 5255 27405 61 3 5 128 1 2 189 6 11 117 0 4 7 5 9 248 chain 5896 chr13 114364328 + 76171309 76171474 L1MA3 4352 + 4191 4322 81502 5 1 0 6 0 3 30 4 0 25 2 0 18 14 12 18 29 1 13 chain 92310 chr13 114364328 + 76242877 76243950 L1P1 4361 + 4 1090 19298 304 1 5 136 0 10 397 1 0 234 chain 27295 chr13 114364328 + 76269172 76269480 L1PA5 6144 + 4499 4807 45830 308 chain 14199 chr13 114364328 + 76276280 76276614 L1PB1 5432 + 5114 5422 63320 32 1 0 10 45 39 25 2 1 16 1 0 42 2 1 16 22 12 9 0 2 7 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 14886 chr13 114364328 + 76279643 76279961 L1PA17 2846 + 2374 2691 62403 19 0 1 25 7 11 31 71 72 44 5 1 13 1 0 41 1 0 18 1 0 41 chain 72725 chr13 114364328 + 76294745 76295836 SVA_F 1814 + 38 1814 23376 111 10 0 274 0 3 5 81 769 16 0 1 134 53 58 20 1 3 14 0 1 346 8 0 6 0 3 12 chain 74082 chr13 114364328 + 76298339 76299192 L1PA5 6144 + 5288 6135 23071 461 4 0 275 2 0 111 chain 519144 chr13 114364328 + 76342318 76348730 L1PA5 6144 + 0 6132 2306 135 32 58 752 0 4 120 2 0 100 9 0 665 316 0 293 0 1 251 0 4 422 0 1 167 8 12 889 0 1 30 0 1 846 0 1 403 0 3 842 0 1 130 chain 17057 chr13 114364328 + 76356594 76356937 THE1B 368 + 0 335 59748 15 2 0 89 19 20 53 24 15 12 3 0 5 36 41 56 1 0 4 0 1 24 chain 8789 chr13 114364328 + 76382102 76382199 L1PA5 6144 + 5901 5998 73013 97 chain 12353 chr13 114364328 + 76382200 76382334 L1PA5 6144 + 5998 6132 66224 134 chain 3149 chr13 114364328 + 76425198 76425244 MER47C 97 + 21 66 98372 12 2 1 32 chain 16489 chr13 114364328 + 76428311 76428531 Tigger3c 601 + 362 581 60396 125 2 1 93 chain 51658 chr13 114364328 + 76431655 76432296 L1PA7 6471 + 5821 6469 28977 311 1 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76605609 L1PA5 6144 + 4194 4792 28336 598 chain 42947 chr13 114364328 + 76605627 76606111 L1PA5 6144 + 4806 5294 32810 469 0 4 15 chain 73982 chr13 114364328 + 76606111 76606941 L1PA5 6144 + 5300 6130 23097 830 chain 24128 chr13 114364328 + 76652435 76652732 L1PA8A 6298 + 5993 6291 50610 195 5 6 97 chain 12925 chr13 114364328 + 76661127 76661326 L1PA16 3655 + 3388 3593 65213 37 10 19 125 13 10 14 chain 19052 chr13 114364328 + 76702368 76702597 L1PA7 6471 + 6242 6469 57492 217 2 0 10 chain 27657 chr13 114364328 + 76726819 76727174 THE1A 353 + 0 353 45386 109 2 1 92 1 0 151 chain 124708 chr13 114364328 + 76727174 76728740 THE1A-int 1579 + 0 1576 14745 233 8 11 48 6 5 4 0 1 171 16 13 821 0 10 259 chain 13137 chr13 114364328 + 76743961 76744283 L1PB1 5432 + 5139 5427 64868 7 1 0 9 8 4 8 2 0 53 2 1 11 5 4 37 9 8 15 2 0 6 16 6 19 7 4 15 6 4 20 1 0 22 1 0 12 2 1 7 1 0 10 3 0 5 chain 12872 chr13 114364328 + 76841553 76841815 L1PB1 5432 + 5179 5420 65302 41 2 1 15 1 0 44 1 0 12 28 16 7 0 2 10 2 0 5 20 17 21 1 0 21 1 0 13 1 0 16 chain 193963 chr13 114364328 + 76917375 76919856 L1PBa1 4058 + 115 2598 9931 48 0 1 4 1 0 4 0 1 26 1 0 211 0 9 9 2 0 189 14 13 23 14 16 157 0 9 7 9 0 614 2 1 42 2 1 70 4 5 81 7 6 79 0 4 496 2 0 42 0 2 181 8 0 132 chain 57059 chr13 114364328 + 76919856 76920798 L1PB1 5432 + 4496 5420 27183 130 4 0 36 0 14 27 4 5 306 23 25 7 0 1 5 2 1 29 0 3 18 1 2 6 2 0 4 3 0 23 1 0 9 16 11 9 2 0 53 2 1 10 7 6 59 1 0 4 28 17 10 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 21915 chr13 114364328 + 76927091 76927448 L1PA8 5853 + 5513 5853 53951 51 1 0 45 2 0 69 38 26 36 2 1 15 6 5 92 chain 20055 chr13 114364328 + 76931716 76931996 L1PA8 5853 + 5580 5853 56305 28 2 0 71 1 0 14 3 2 12 1 0 9 1 0 6 0 1 17 2 1 19 4 3 90 chain 67327 chr13 114364328 + 76963423 76964174 L1PA2 6032 + 5280 6032 24615 586 1 6 4 5 0 76 0 1 79 chain 11284 chr13 114364328 + 76979901 76980051 L1PA8 5853 + 5703 5851 68106 36 3 2 19 1 0 91 chain 56576 chr13 114364328 + 77009553 77010267 L1PA7 6471 + 5758 6469 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5522 22288 623 0 4 236 chain 14155 chr13 114364328 + 79262669 79263006 L1PB1 5432 + 5114 5430 63371 19 2 1 12 1 0 12 13 11 50 1 0 10 10 9 41 39 34 13 3 1 5 1 0 14 2 0 24 1 0 22 1 0 13 1 0 13 1 0 8 1 0 4 chain 30019 chr13 114364328 + 79274081 79274486 LTR7 482 + 1 477 42033 68 8 46 109 0 1 33 0 1 4 1 32 12 0 1 4 1 0 165 chain 299160 chr13 114364328 + 79274493 79278169 HERVH-int 3825 + 0 3825 6855 184 1 5 341 1 0 11 1 0 4 0 1 24 2 1 9 1 0 12 22 12 14 1 0 13 31 25 20 45 1 21 43 22 7 1 0 52 1 0 450 16 1 345 2 1 109 4 31 279 5 9 20 0 3 1052 0 2 39 0 210 268 0 2 225 chain 30316 chr13 114364328 + 79279412 79279816 LTR7 482 + 0 477 41742 69 8 46 109 0 1 33 0 32 129 12 14 44 chain 17706 chr13 114364328 + 79279823 79280195 MSTA 426 + 7 426 58998 98 19 43 40 106 129 109 chain 11812 chr13 114364328 + 79286427 79286626 Tigger1 2417 + 2206 2417 67183 32 14 13 60 6 8 17 7 18 63 chain 512536 chr13 114364328 + 79300073 79306064 L1PA5 6144 + 0 6138 2642 129 1 15 12 0 12 184 3 127 439 0 5 240 15 6 1139 7 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114364328 + 80516865 80522982 L1PA6 6164 + 0 6159 2589 212 8 1 158 25 32 87 11 20 162 0 5 1598 1 0 54 1 2 127 0 2 242 0 3 25 5 24 435 0 1 353 1 2 151 1 0 7 1 0 230 3 0 481 0 1 228 0 1 651 1 5 125 0 1 733 chain 29178 chr13 114364328 + 80530263 80530674 MER75 514 + 46 463 43086 58 2 3 144 5 7 30 0 3 34 0 9 20 9 0 109 chain 358493 chr13 114364328 + 80578442 80583865 L1PB1 5432 + 90 5424 5818 311 1 0 86 0 1 266 0 1 4 10 13 59 10 11 161 0 3 280 5 4 105 1 0 7 2 0 5 24 11 183 29 34 208 6 8 86 0 1 63 0 1 174 0 10 305 1 7 38 0 1 68 21 22 139 0 3 180 26 37 693 0 2 13 0 15 15 1 3 140 0 14 81 0 1 156 0 317 186 22 0 181 0 1 179 0 1 95 5 9 14 430 1 11 1 0 24 1 0 9 16 11 11 2 0 51 42 40 20 1 0 16 3 0 7 14 5 19 17 19 24 1 0 21 2 0 13 1 0 16 1 0 4 chain 18479 chr13 114364328 + 80588047 80588397 MLT2A2 560 + 18 540 58124 147 64 65 61 33 204 45 chain 22237 chr13 114364328 + 80664440 80664716 AluSc 308 + 8 285 53496 85 1 2 190 chain 158367 chr13 114364328 + 80673899 80675682 L1PA5 6144 + 3976 5768 11850 655 0 5 661 0 4 467 chain 484124 chr13 114364328 + 80689596 80695745 L1PA7 6471 + 323 6470 3549 44 9 10 35 25 2 59 0 1 642 48 0 38 0 1 55 0 4 28 0 1 25 14 10 498 2 1 249 0 1 49 0 6 554 1 2 56 0 1 4 3 5 51 0 26 320 0 4 127 0 1 250 0 2 120 1 2 315 0 3 56 0 1 19 1 2 308 0 3 14 2 0 279 2 0 64 0 4 110 0 1 232 1 0 351 0 1 153 0 3 88 0 3 95 0 3 359 0 1 62 0 2 178 1 0 7 0 1 145 chain 47815 chr13 114364328 + 80704784 80705372 HERVE-int 4064 + 2118 2703 30354 81 19 16 488 chain 48136 chr13 114364328 + 80706437 80707018 HERVE-int 4064 + 2118 2696 30246 93 3 0 485 chain 28879 chr13 114364328 + 80758405 80758762 LTR12D 1347 + 405 810 43516 131 0 31 126 1 18 99 chain 8826 chr13 114364328 + 80832194 80832332 L1M1 2793 + 2561 2695 72927 63 6 5 10 1 0 35 1 0 11 1 0 10 chain 21832 chr13 114364328 + 80846088 80846395 THE1A 353 + 0 302 54061 84 0 1 4 1 0 16 6 5 124 1 0 60 3 0 8 chain 15550 chr13 114364328 + 80909017 80909364 MSTA 426 + 14 408 61587 75 32 56 9 0 6 41 68 66 33 15 34 74 chain 52957 chr13 114364328 + 80915254 80915974 L1PREC2 3366 + 2093 2806 28592 159 0 4 55 7 1 167 3 0 238 2 0 35 2 0 45 0 2 7 chain 4101 chr13 114364328 + 80999168 80999224 MER30 238 + 184 237 90762 14 3 0 39 chain 27194 chr13 114364328 + 80999366 80999681 LTR12C 1709 + 1118 1437 45972 106 0 4 209 chain 15393 chr13 114364328 + 81008229 81008447 THE1D-int 1627 + 15 234 61796 21 11 6 135 2 8 49 chain 39884 chr13 114364328 + 81063418 81063920 MER9a3 513 + 1 509 34751 12 0 1 20 2 3 46 5 8 354 0 2 12 1 0 50 chain 89684 chr13 114364328 + 81076301 81077294 L1PA3long 6157 + 5160 6152 19730 855 1 0 137 chain 24148 chr13 114364328 + 81096243 81096536 AluSp 311 + 14 307 50575 293 chain 67523 chr13 114364328 + 81102241 81103003 SVA_D 2077 + 1110 2077 24559 77 0 86 30 0 98 522 0 20 87 0 1 46 chain 21247 chr13 114364328 + 81130455 81130799 THE1B 368 + 0 356 54825 15 2 0 32 5 6 55 0 4 57 1 0 29 36 46 112 chain 48783 chr13 114364328 + 81140685 81141292 PABL_A 660 + 0 620 30019 56 0 4 209 0 13 263 16 12 63 chain 31993 chr13 114364328 + 81184523 81185064 MER4B 649 + 0 572 40350 26 1 0 20 11 14 52 2 0 5 2 4 14 3 41 20 3 0 166 0 9 47 51 38 87 12 5 6 0 5 13 chain 17019 chr13 114364328 + 81205604 81205920 THE1C 375 + 0 335 59786 59 8 23 9 14 0 7 24 45 36 23 20 136 chain 4740 chr13 114364328 + 81265760 81265816 U6 107 + 14 70 87009 56 chain 67319 chr13 114364328 + 81275267 81276245 MER11B 1079 + 0 983 24618 357 1 3 69 1 0 34 1 0 34 0 1 82 18 18 24 0 9 87 1 0 22 46 38 19 5 6 22 0 1 41 0 1 16 3 4 95 chain 501819 chr13 114364328 + 81362260 81368955 L1PA7 6471 + 6 6454 3064 80 0 18 126 0 1 12 0 1 162 1 0 6 10 0 61 1 0 98 3 0 48 1 2 64 0 1 56 9 14 94 0 1 401 1 20 679 5 4 186 0 1 497 0 2 45 0 1 7 2 1 362 0 1 38 1 5 50 308 0 261 0 1 71 3 2 36 2 1 90 6 7 393 1 0 645 60 64 51 0 1 188 1 0 585 0 1 73 1 0 14 1 0 4 0 1 27 2 7 27 0 3 260 10 17 175 0 1 43 0 2 106 1 2 144 chain 73321 chr13 114364328 + 81524593 81525644 MER11A 1151 + 0 1151 23255 56 1 0 11 0 99 109 4 1 13 8 5 94 0 1 51 6 7 89 0 7 16 1 0 114 10 14 109 40 14 24 5 28 225 1 0 64 chain 2183 chr13 114364328 + 81525300 81525323 MER11A 1151 + 836 859 105366 23 chain 51924 chr13 114364328 + 81560839 81561422 L1PA3long 6157 + 3565 4153 28899 430 0 5 153 chain 157612 chr13 114364328 + 81630477 81632402 L1PA7 6471 + 1106 3053 11904 107 0 15 133 1 0 17 8 11 116 1 2 917 0 3 102 0 1 109 0 2 60 1 0 168 2 1 183 chain 442900 chr13 114364328 + 81748214 81753198 L1PA4 6152 + 1158 6152 4516 78 1 0 605 0 5 85 0 1 175 0 3 723 0 1 1654 0 2 792 0 4 823 0 1 26 3 0 10 3 0 6 chain 112703 chr13 114364328 + 81787140 81788585 L1PA8 5853 + 4433 5853 16723 554 18 12 7 13 0 5 0 1 169 0 1 12 5 1 137 0 1 13 1 3 215 1 0 44 2 0 74 1 0 12 8 7 43 1 0 16 1 0 93 chain 16832 chr13 114364328 + 81803534 81803735 L1PA5 6144 + 5930 6131 60001 201 chain 15154 chr13 114364328 + 81830061 81830402 L1PB1 5432 + 5108 5420 62090 6 1 0 24 1 0 9 27 20 70 1 0 44 2 1 14 1 0 4 60 46 24 1 0 21 1 0 13 1 0 16 chain 182350 chr13 114364328 + 81860653 81862714 L1PA5 6144 + 4072 6140 10480 60 0 1 727 0 1 160 0 1 275 0 4 839 chain 27647 chr13 114364328 + 81866094 81866491 LTR7 482 + 0 469 45397 68 9 47 109 9 10 30 0 31 124 12 14 36 chain 282346 chr13 114364328 + 81866506 81870219 HERVH-int 3825 + 0 3825 7365 332 1 0 201 1 0 37 12 10 25 0 52 22 126 0 19 2 1 76 0 4 457 21 6 189 9 0 24 0 2 13 1 0 46 2 1 262 0 1 129 1 0 4 0 1 135 49 54 278 7 0 739 8 218 160 0 2 325 chain 27059 chr13 114364328 + 81872022 81872431 LTR7 482 + 0 482 46183 68 9 47 93 20 53 158 16 18 45 chain 84180 chr13 114364328 + 81933105 81934218 L1PA8A 6298 + 5167 6290 20769 327 0 6 59 1 0 113 1 0 4 1 2 69 0 1 428 7 0 7 3 10 10 0 3 56 5 6 22 chain 8067 chr13 114364328 + 81939183 81939286 L1PA8A 6298 + 6167 6272 74708 18 1 3 84 chain 54992 chr13 114364328 + 81953228 81953831 L1PA3long 6157 + 5554 6157 27877 603 chain 34844 chr13 114364328 + 81985480 81985892 L1PA6 6164 + 5745 6158 38127 86 0 1 326 chain 3629 chr13 114364328 + 81990408 81990454 MADE1 96 + 50 96 94191 46 chain 552425 chr13 114364328 + 82045349 82051378 L1PA2 6032 + 0 6032 584 256 1 0 5610 5 0 7 0 5 134 0 6 9 2 0 5 chain 405273 chr13 114364328 + 82110639 82115241 L1PA4 6152 + 1126 6152 5088 549 1 427 1069 4 1 31 0 1 357 0 1 1103 1 0 1487 chain 16563 chr13 114364328 + 82195882 82196175 L1MA3 4352 + 3882 4152 60300 208 67 44 18 chain 550005 chr13 114364328 + 82229018 82235152 L1PA3long 6157 + 6 6157 747 122 1 15 11 14 1 932 0 1 60 0 6 217 0 1 786 1 0 928 5 6 96 0 1 25 0 1 1053 0 3 1601 7 10 275 chain 22809 chr13 114364328 + 82258535 82258833 LTR12C 1709 + 760 1147 52647 59 0 40 131 0 2 92 1 48 15 chain 4982 chr13 114364328 + 82258925 82259045 LTR12C 1709 + 954 1037 85740 50 46 9 24 chain 22025 chr13 114364328 + 82372053 82372340 MER4A1 472 + 143 451 53801 75 13 34 199 chain 46454 chr13 114364328 + 82380069 82380625 LTR6B 557 + 0 557 30862 359 0 1 38 10 9 120 1 2 28 chain 55192 chr13 114364328 + 82396704 82397409 LTR30 714 + 0 714 27811 83 5 6 154 8 16 170 0 1 101 16 15 168 chain 188259 chr13 114364328 + 82403003 82405408 L1PA8 5853 + 3454 5852 10197 28 3 4 506 0 2 201 0 1 10 5 4 20 0 1 106 9 1 353 2 0 25 19 18 276 6 4 40 0 4 506 1 0 44 2 0 71 1 0 12 1 0 53 2 1 15 1 0 47 1 6 39 chain 88288 chr13 114364328 + 82420552 82421555 L1PA5 6144 + 5148 6143 19989 987 8 0 8 chain 43544 chr13 114364328 + 82457553 82458080 LTR17 781 + 255 772 32419 44 10 0 28 0 1 327 1 0 117 chain 59429 chr13 114364328 + 82459632 82460566 HERV17-int 4347 + 12 756 26525 14 2 1 51 1 0 34 2 0 27 184 0 156 5 0 304 0 2 30 0 1 55 1 2 5 1 0 62 chain 4413 chr13 114364328 + 82459764 82459816 HERV17-int 4347 + 139 191 88341 52 chain 8793 chr13 114364328 + 82459816 82459944 HERV17-int 4347 + 13 137 73007 13 2 1 50 2 1 35 2 0 24 chain 50650 chr13 114364328 + 82486254 82486818 L1PA4 6152 + 5257 5821 29327 564 chain 24076 chr13 114364328 + 82509945 82510210 L1PA2 6032 + 5768 6031 50690 258 2 0 5 chain 11643 chr13 114364328 + 82517631 82517787 Tigger2a 444 + 143 301 67494 86 0 2 70 chain 5579 chr13 114364328 + 82518427 82518636 LTR52 417 + 78 329 82897 35 124 166 50 chain 78949 chr13 114364328 + 82607932 82608934 MER11A 1151 + 9 1151 21884 46 0 99 137 0 2 31 0 2 62 0 1 45 16 17 357 1 2 9 9 43 289 chain 29309 chr13 114364328 + 82669567 82669906 L1PA2 6032 + 5688 6027 42874 178 5 0 7 1 6 148 chain 3189 chr13 114364328 + 82699613 82699648 MER31B 477 + 0 35 97994 35 chain 51900 chr13 114364328 + 82707395 82708034 L1PA8 5853 + 3794 4433 28911 160 1 0 26 0 1 7 0 1 351 1 0 93 chain 97671 chr13 114364328 + 82741880 82742943 L1PA2 6032 + 4964 6031 18568 218 0 4 845 chain 54942 chr13 114364328 + 82788953 82789639 LTR12D 1347 + 409 1347 27897 91 0 258 91 1 0 173 3 0 27 6 5 28 1 0 265 chain 5097 chr13 114364328 + 82859663 82859742 MADE1 96 + 0 96 85175 16 0 1 29 5 21 29 chain 3061 chr13 114364328 + 82899116 82899151 L1MB7 1623 + 1385 1420 99210 35 chain 16678 chr13 114364328 + 82912385 82912625 L1PA8 5853 + 5612 5847 60175 66 2 1 9 7 5 47 2 1 19 1 0 87 chain 434672 chr13 114364328 + 82952932 82959301 L1PA8 5853 + 52 5843 4673 19 2 0 11 66 29 115 23 23 49 21 10 252 7 8 70 0 3 6 1 0 7 2 1 202 39 9 330 13 12 303 13 10 8 2 0 77 0 1 267 0 2 147 1 0 56 1 11 348 0 1 28 5 6 340 1 5 96 8 10 63 0 2 231 4 5 49 7 8 107 7 6 77 3 4 751 518 0 143 7 6 489 1 7 137 2 0 77 0 1 9 0 1 349 0 1 114 8 7 40 5 4 66 2 1 9 1 0 52 2 1 19 1 0 83 chain 7941 chr13 114364328 + 83049148 83049252 MER4B 649 + 471 577 75019 66 1 3 37 chain 10331 chr13 114364328 + 83072244 83072373 THE1C-int 1605 + 312 441 69736 129 chain 116839 chr13 114364328 + 83106320 83107896 THE1A-int 1579 + 0 1573 16082 25 1 0 16 4 5 29 3 4 359 82 72 73 0 1 20 0 2 388 0 2 360 0 1 216 chain 21368 chr13 114364328 + 83147103 83147371 AluSg4 309 + 21 288 54680 127 6 5 135 chain 315583 chr13 114364328 + 83171183 83175035 L1P2 5180 + 2 3880 6491 148 2 1 96 3 2 248 6 10 8 1 0 265 8 7 5 1 0 141 0 25 87 0 1 44 1 0 4 0 1 746 0 1 245 1 2 57 0 1 170 3 1 643 1 0 228 1 0 229 0 1 102 0 1 358 chain 26765 chr13 114364328 + 83196707 83197051 L1PA8 5853 + 5503 5853 46592 61 1 0 44 2 0 73 1 0 7 1 0 52 2 1 19 1 0 42 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21 1 2 40 2 0 16 15 12 30 1 2 233 0 2 197 0 4 189 17 0 263 8 7 115 0 4 91 0 2 268 4 1 290 5 2 316 8 7 112 2 0 206 3 11 227 14 13 142 2 1 4 0 1 128 2 0 5 8 7 57 1 0 41 5 17 10 11 0 10 0 3 198 0 1 143 0 1 75 0 1 279 4 0 97 7 23 80 0 5 1133 0 3 79 1 2 586 0 2 127 chain 40051 chr13 114364328 + 83486638 83487207 LTR12_ 688 + 12 688 34622 13 1 0 119 8 32 16 20 0 67 1 2 120 0 103 204 chain 14230 chr13 114364328 + 83517156 83517673 LTR12D 1347 + 584 1096 63292 114 135 8 45 178 301 30 1 0 14 chain 2231 chr13 114364328 + 83517754 83517791 LTR12D 1347 + 1038 1074 105146 11 4 3 22 chain 78049 chr13 114364328 + 83522587 83523442 L1PA2 6032 + 4187 5048 22090 329 0 5 519 0 1 7 chain 125601 chr13 114364328 + 83533512 83535174 HUERS-P2-int 2744 + 893 2572 14613 174 0 3 315 13 6 87 6 0 137 0 1 4 1 0 132 1 3 497 1 0 4 30 59 76 1 0 42 0 1 6 1 0 70 7 8 26 3 0 28 chain 25545 chr13 114364328 + 83660850 83661232 THE1D 372 + 0 372 48416 47 9 0 86 0 1 37 7 11 5 3 0 6 1 0 30 7 6 111 1 0 32 chain 36553 chr13 114364328 + 83715792 83716254 LTR2 463 + 0 463 37040 362 12 13 88 chain 488947 chr13 114364328 + 83754153 83760260 L1PA7 6471 + 22 6467 3444 390 1 2 205 8 9 191 0 1 65 7 11 437 0 49 32 1 4 847 1 0 119 1 0 191 0 2 586 8 24 75 15 14 68 4 249 149 1 0 590 0 1 292 1 0 19 4 8 14 0 8 37 1 0 114 0 10 75 1 0 4 2 0 69 1 0 640 0 4 728 1 0 112 chain 6310 chr13 114364328 + 83782408 83782502 L1PA17 2846 + 79 173 79963 59 4 5 6 1 0 24 chain 40094 chr13 114364328 + 83833381 83833829 LTR7 482 + 0 482 34597 144 0 3 83 0 31 221 chain 61711 chr13 114364328 + 83871255 83872009 MER4E 760 + 0 754 25942 164 2 0 54 6 5 132 1 0 129 0 4 266 chain 29795 chr13 114364328 + 83893130 83893491 L1PA6 6164 + 5802 6161 42235 354 2 0 5 chain 12613 chr13 114364328 + 83940114 83940281 L1PA8 5853 + 5688 5853 65780 52 2 1 19 4 3 90 chain 262681 chr13 114364328 + 83963554 83966366 L1HS 6032 + 3220 6032 7893 2812 chain 223112 chr13 114364328 + 83997094 84000607 MER61-int 3695 + 1 3695 8956 6 2 0 5 0 2 14 1 4 14 1 0 154 37 0 73 1 0 53 13 6 78 16 2 17 0 572 226 2 1 141 0 1 43 1 6 24 2 1 274 1 7 57 27 28 64 26 0 70 20 22 5 0 1 107 0 1 56 0 6 41 0 3 58 0 1 179 0 1 100 11 11 29 0 2 41 3 1 61 0 1 74 0 1 20 1 0 71 0 1 29 40 36 85 1 0 165 6 4 156 0 1 23 316 0 16 0 1 254 15 0 87 chain 26965 chr13 114364328 + 84060535 84060893 L1PA8 5853 + 5502 5853 46315 64 1 0 42 2 0 74 1 0 6 1 0 52 2 1 19 2 1 92 chain 92048 chr13 114364328 + 84117057 84118334 L1PA8 5853 + 4570 5853 19333 18 1 0 4 0 1 245 0 1 55 13 6 109 0 3 174 1 2 211 1 0 80 8 19 66 1 0 44 2 0 15 3 7 10 1 0 38 2 1 13 9 10 38 2 1 15 6 5 92 chain 56291 chr13 114364328 + 84134186 84134841 L1PA5 6144 + 5490 6144 27485 181 1 0 473 chain 9785 chr13 114364328 + 84254792 84254916 MER50 708 + 559 684 70857 4 0 1 120 chain 5140 chr13 114364328 + 84268890 84268977 L1MB3 1562 + 1466 1552 84959 58 10 9 19 chain 17022 chr13 114364328 + 84302307 84302669 THE1C 375 + 13 375 59782 29 95 97 32 22 24 8 6 0 91 0 2 79 chain 21373 chr13 114364328 + 84345227 84345473 L1PB 1623 + 760 1006 54675 246 chain 37570 chr13 114364328 + 84409563 84410331 L1PB1 5432 + 4854 5423 36353 249 176 11 23 1 0 9 1 0 10 2 0 3 2 0 7 2 0 54 2 1 15 1 0 44 1 0 16 14 1 30 2 0 4 1 0 15 5 3 21 1 0 21 1 0 8 6 5 14 2 0 5 chain 7739 chr13 114364328 + 84467598 84467833 L1MA9 1812 + 403 634 75514 7 12 0 23 1 0 69 98 107 25 chain 64937 chr13 114364328 + 84476290 84477072 L1PA7 6471 + 5680 6470 25204 250 0 5 75 0 2 285 1 2 171 chain 26436 chr13 114364328 + 84496058 84496441 L1PA8 5853 + 5474 5853 47071 90 1 0 39 7 5 80 1 0 43 12 11 18 1 0 71 0 2 20 chain 97873 chr13 114364328 + 84501925 84503973 L1PA2 6032 + 3998 6031 18539 653 15 0 527 0 1 77 1 0 775 chain 2952 chr13 114364328 + 84519907 84519944 LTR33C 613 + 6 43 100355 37 chain 34739 chr13 114364328 + 84560841 84561322 MER9a3 513 + 0 513 38196 14 4 6 86 5 6 67 15 16 63 0 17 20 0 10 129 0 1 78 chain 186045 chr13 114364328 + 84696139 84698680 L1PA10 4194 + 1624 4150 10292 535 5 6 382 1 0 56 1 0 19 0 1 25 0 1 15 2 1 64 0 2 34 9 10 79 0 3 5 15 13 76 4 0 381 0 1 5 0 2 109 36 17 33 5 4 20 0 5 451 1 0 101 1 2 34 4 1 33 chain 236677 chr13 114364328 + 84725510 84728116 L1PA3long 6157 + 3551 6157 8552 2606 chain 8484 chr13 114364328 + 84788976 84789082 HUERS-P1-int 2401 + 721 826 73710 52 1 0 53 chain 14937 chr13 114364328 + 84869542 84869736 LTR14C 587 + 389 587 62340 79 5 7 53 0 2 57 chain 49051 chr13 114364328 + 84876736 84877320 LTR14C 587 + 0 587 29931 225 0 1 115 0 1 90 12 11 116 0 2 26 chain 171494 chr13 114364328 + 84905053 84907242 HERVL-int 5654 + 3457 5654 11022 325 0 1 107 7 8 96 5 0 72 15 16 226 11 10 33 0 1 10 0 2 424 1 0 4 0 1 431 0 1 58 0 3 98 0 1 98 0 3 168 chain 18790 chr13 114364328 + 84907249 84907639 MLT2A2 560 + 7 518 57798 162 7 15 12 108 217 48 0 5 14 6 5 14 1 0 6 0 1 12 chain 58809 chr13 114364328 + 84909121 84910266 L1PA8 5853 + 5036 5853 26736 55 4 5 118 2 0 12 326 14 161 0 1 141 10 1 20 2 0 46 2 0 68 2 1 9 1 0 52 2 1 19 1 0 79 0 1 13 chain 10068 chr13 114364328 + 84927209 84927395 L1P3b 214 + 0 175 70263 32 5 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736 0 5 6 0 1 254 1 0 413 0 1 259 0 4 53 chain 36239 chr13 114364328 + 85895393 85895941 MLT2A2 560 + 0 558 37245 167 60 59 173 17 28 39 1 0 82 0 1 9 chain 53951 chr13 114364328 + 85926044 85927945 L1HS 6032 + 4152 6032 28244 864 21 0 1016 chain 13195 chr13 114364328 + 85958179 85958416 THE1B 368 + 9 263 64790 16 15 30 112 33 32 44 4 7 13 chain 5194 chr13 114364328 + 86041801 86041894 L1M3 994 + 258 350 84708 22 19 18 52 chain 107117 chr13 114364328 + 86070979 86072362 L1PA8 5853 + 4466 5853 17420 140 5 0 343 1 2 56 0 2 75 0 2 273 4 5 148 0 8 86 4 2 70 2 1 55 8 7 19 1 0 93 chain 163874 chr13 114364328 + 86143804 86145816 L1PA7 6471 + 4450 6465 11491 221 6 10 801 1 0 139 1 0 253 0 1 219 1 0 42 1 2 327 chain 3376 chr13 114364328 + 86178189 86178234 MER20 218 + 31 75 96333 32 1 0 12 chain 8460 chr13 114364328 + 86253358 86253487 MER85 139 + 0 139 73777 69 20 30 40 chain 19949 chr13 114364328 + 86291060 86291404 MSTA 426 + 12 381 56460 28 1 2 66 0 21 69 64 64 46 7 10 63 chain 39843 chr13 114364328 + 86358167 86358617 LTR7 482 + 0 482 34776 225 0 1 35 0 31 190 chain 293081 chr13 114364328 + 86358628 86362438 HERVH-int 3825 + 9 3816 7038 40 0 1 161 0 11 161 11 0 149 5 0 38 1 0 7 1 0 28 0 13 13 3 0 8 148 1 17 22 0 12 88 4 25 0 20 11 2 1 49 1 0 444 15 0 200 0 1 17 0 1 243 4 31 630 0 4 101 0 3 307 9 0 225 0 3 101 1 4 26 8 218 15 6 0 5 3 9 449 chain 39769 chr13 114364328 + 86363685 86364136 LTR7 482 + 0 482 34844 263 1 32 187 chain 164551 chr13 114364328 + 86410048 86412420 L1PA10 4194 + 175 2495 11452 11 2 0 11 3 0 15 16 11 9 2 0 8 6 5 5 1 0 10 52 0 9 31 54 12 2 0 21 1 0 7 2 1 10 1 0 6 5 0 15 7 0 7 3 1 10 0 1 74 2 0 406 0 1 327 1 2 423 22 26 439 0 1 105 4 8 269 chain 52408 chr13 114364328 + 86509089 86509668 L1PA3long 6157 + 3994 4574 28754 234 0 1 345 chain 5907 chr13 114364328 + 86555346 86555414 L1PA5 6144 + 6064 6132 81454 68 chain 25166 chr13 114364328 + 86562490 86562789 AluYk4 311 + 0 300 49014 126 1 0 119 4 6 49 chain 45461 chr13 114364328 + 86611095 86611630 L1PA7 6471 + 5914 6467 31332 301 0 2 176 0 16 58 chain 62604 chr13 114364328 + 86620435 86621231 L1PA8A 6298 + 5495 6291 25731 72 6 7 108 0 1 23 3 0 153 0 1 319 9 9 103 chain 8741 chr13 114364328 + 86651386 86651486 L1P1 4361 + 158 258 73112 100 chain 93780 chr13 114364328 + 86681721 86682780 L1PA4 6152 + 4462 5520 19068 839 1 0 219 chain 69597 chr13 114364328 + 86683395 86684158 L1PA3long 6157 + 5394 6157 24096 763 chain 52820 chr13 114364328 + 86705053 86705765 L1PB 1623 + 739 1450 28637 30 1 3 172 0 1 4 3 2 238 0 2 116 4 0 139 1 0 4 chain 47574 chr13 114364328 + 86706338 86706885 L1PA5 6144 + 5557 6137 30451 231 0 32 70 1 2 245 chain 4264 chr13 114364328 + 86743790 86743872 MER67D 511 + 404 485 89744 35 19 18 28 chain 38158 chr13 114364328 + 86746068 86746567 L1PA8 5853 + 4708 5204 35941 26 1 0 250 0 1 21 1 0 4 5 3 191 chain 52779 chr13 114364328 + 86747433 86748014 L1PA2 6032 + 5449 6030 28645 581 chain 27872 chr13 114364328 + 86754143 86754927 L1PB1 5432 + 4867 5413 45077 21 10 0 6 1 13 180 8 0 16 199 2 10 3 0 23 1 0 9 16 11 9 2 0 53 2 1 16 2 1 37 6 5 16 3 0 6 74 59 9 1 0 21 1 0 13 1 0 9 chain 11077 chr13 114364328 + 86792696 86792835 LTR12C 1709 + 931 1068 68447 62 2 0 75 chain 52916 chr13 114364328 + 86807774 86808922 L1PB1 5432 + 4543 5430 28604 33 4 5 28 0 4 8 7 0 462 315 79 6 2 0 7 0 3 42 3 2 15 1 0 45 1 0 11 56 42 11 2 0 24 1 0 22 1 0 13 1 0 17 2 0 8 chain 57655 chr13 114364328 + 86838945 86839659 LTR30 714 + 0 714 27069 534 13 12 158 0 1 9 chain 12261 chr13 114364328 + 86863305 86863496 THE1C-int 1605 + 1251 1595 66349 42 9 161 92 6 7 42 chain 304690 chr13 114364328 + 86896445 86900027 L1PA6 6164 + 2576 6162 6727 609 2 0 4 0 1 32 0 1 307 1 0 119 0 1 1317 0 2 727 8 10 323 0 5 56 6 5 61 4 0 6 chain 178917 chr13 114364328 + 86957327 86959569 L1PA7 6471 + 4230 6459 10637 507 1 0 93 2 0 75 13 8 40 3 0 155 22 0 129 2 3 51 0 7 301 0 4 17 0 4 5 1 2 122 0 3 262 4 1 6 0 3 431 chain 36756 chr13 114364328 + 86966788 86967314 MLT2A2 560 + 0 560 36919 182 0 23 29 2 0 166 2 13 29 0 1 17 24 25 14 1 0 6 0 1 54 chain 11294 chr13 114364328 + 87000000 87001137 L1PB4 2604 + 2058 2570 68089 72 7 8 32 865 237 45 68 71 29 8 7 11 chain 7133 chr13 114364328 + 87035999 87036104 MER49 923 + 0 95 77158 11 10 0 84 chain 316378 chr13 114364328 + 87043489 87047451 L1PA7 6471 + 2527 6470 6478 105 0 1 48 0 4 72 0 2 29 71 11 306 0 2 377 17 14 24 2 1 434 0 2 144 1 0 236 5 4 642 0 1 80 0 1 172 0 22 167 0 1 148 0 7 37 1 0 80 1 2 40 0 1 98 3 4 127 0 1 251 5 6 239 chain 22763 chr13 114364328 + 87052909 87053325 THE1D 372 + 0 372 52732 18 6 0 57 36 0 9 4 0 56 50 52 180 chain 5094 chr13 114364328 + 87081888 87081995 L1MA3 4352 + 3816 3922 85184 21 28 29 39 1 0 3 1 0 14 chain 17306 chr13 114364328 + 87152959 87153157 L1PA5 6144 + 5941 6139 59450 198 chain 101861 chr13 114364328 + 87161552 87162862 L1PA8 5853 + 3869 5190 18079 253 1 0 119 28 29 35 1 5 24 2 0 160 0 5 217 1 2 5 1 0 20 0 8 255 2 0 3 2 0 181 chain 40454 chr13 114364328 + 87195029 87195514 MER9a1 513 + 14 513 34344 144 0 13 303 1 2 37 chain 22595 chr13 114364328 + 87250044 87250327 AluSp 311 + 13 302 52992 29 0 6 254 chain 41018 chr13 114364328 + 87271029 87271553 L1PA5 6144 + 5671 6139 33957 53 56 0 415 chain 47987 chr13 114364328 + 87306916 87307467 L1PA4 6152 + 5593 6143 30303 93 2 0 5 0 2 125 1 0 325 chain 51444 chr13 114364328 + 87319879 87320446 L1PA2 6032 + 5447 6032 29070 31 1 19 535 chain 16225 chr13 114364328 + 87321800 87321996 L1PA8 5853 + 5372 5568 60715 168 0 1 23 1 0 4 chain 33860 chr13 114364328 + 87333620 87334098 LTR12F 595 + 0 555 38808 84 25 0 20 7 2 22 7 114 77 1 2 5 1 0 229 chain 261471 chr13 114364328 + 87334169 87337416 HERV9-int 5642 + 11 3346 7928 227 0 1 11 11 7 6 0 4 237 7 10 87 0 2 6 19 18 71 21 0 18 6 0 130 2 0 21 0 85 102 1 0 60 13 18 101 9 5 146 0 1 471 1 0 227 0 3 58 0 23 75 1 2 1102 chain 121311 chr13 114364328 + 87412277 87413779 L1PA7 6471 + 4966 6461 15295 421 6 0 9 0 6 219 1 0 531 4 5 61 7 0 175 0 2 6 14 12 48 chain 8899 chr13 114364328 + 87438172 87438269 L1P3 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114364328 + 87939866 87940346 L1PA7 6471 + 5986 6461 36006 51 0 1 269 23 17 137 chain 11239 chr13 114364328 + 87999335 87999513 MSTA 426 + 203 381 68181 5 1 0 7 2 0 85 14 17 64 chain 4050 chr13 114364328 + 88018166 88018215 THE1C-int 1605 + 160 209 91086 49 chain 9209 chr13 114364328 + 88027149 88027253 MSTA 426 + 318 422 72105 104 chain 9874 chr13 114364328 + 88057961 88058095 THE1C 375 + 0 127 70674 32 8 1 94 chain 5046 chr13 114364328 + 88187858 88187918 MADE1 96 + 21 96 85435 9 0 15 51 chain 19828 chr13 114364328 + 88197960 88198240 L1PREC2 3366 + 2508 2788 56644 138 6 8 97 3 1 36 chain 106016 chr13 114364328 + 88199681 88200851 L1P1 4361 + 2629 3799 17563 1170 chain 10398 chr13 114364328 + 88279717 88279841 HERVL-int 5654 + 68 192 69624 124 chain 3058 chr13 114364328 + 88284957 88284992 THE1C-int 1605 + 173 208 99233 35 chain 118845 chr13 114364328 + 88291637 88293083 LTR12C 1709 + 0 1709 15737 198 7 8 444 0 119 60 0 40 243 1 0 5 3 1 106 0 4 162 0 103 116 17 16 84 chain 5941 chr13 114364328 + 88298820 88298892 MER2 342 + 131 203 81316 72 chain 34209 chr13 114364328 + 88330617 88331119 LTR10D 510 + 0 505 38557 65 2 0 5 8 9 15 1 9 43 0 1 78 6 0 9 10 13 172 2 0 86 chain 37666 chr13 114364328 + 88374051 88374566 MER9a1 513 + 16 513 36293 19 4 30 313 57 12 44 0 1 78 chain 26599 chr13 114364328 + 88421003 88421286 AluY 311 + 18 302 46835 114 0 1 169 chain 68522 chr13 114364328 + 88434624 88435577 MER11A 1151 + 0 1135 24330 55 0 99 21 9 1 54 2 1 63 4 0 23 10 12 98 16 17 94 0 1 34 0 1 110 0 1 122 0 81 28 0 9 47 2 1 10 5 6 146 chain 4173 chr13 114364328 + 88490998 88491049 LOR1-int 1871 + 988 1040 90311 12 0 1 39 chain 10556 chr13 114364328 + 88593167 88593454 L1PA15-16 3068 + 301 545 69313 58 85 45 28 21 21 22 16 13 57 chain 172654 chr13 114364328 + 88596112 88598052 L1PA5 6144 + 3931 5874 10969 1363 0 3 577 chain 9987 chr13 114364328 + 88625919 88626030 AluYk4 311 + 199 310 70451 111 chain 150103 chr13 114364328 + 88682924 88684565 L1PA3long 6157 + 4506 6147 12342 1641 chain 5936 chr13 114364328 + 88724536 88724603 THE1A-int 1579 + 1512 1579 81337 67 chain 25104 chr13 114364328 + 88737981 88738336 THE1A 353 + 0 352 49110 110 1 0 91 12 13 88 5 2 48 chain 2738 chr13 114364328 + 88820334 88820363 MER20 218 + 39 68 102054 29 chain 143541 chr13 114364328 + 88832562 88834429 L1PA3long 6157 + 4293 6157 12801 173 3 0 87 1 0 532 0 1 1071 chain 3316 chr13 114364328 + 88842439 88842475 tRNA-Gly-GGY 63 + 0 36 96876 36 chain 28705 chr13 114364328 + 88870571 88870878 AluYa5 310 + 0 306 43791 123 1 0 183 chain 69107 chr13 114364328 + 89025492 89026335 L1PA7 6471 + 5628 6469 24195 440 0 1 389 3 0 11 chain 551402 chr13 114364328 + 89087885 89093918 L1PA2 6032 + 0 6030 645 166 0 5 274 5 6 562 4 0 4231 3 0 622 5 0 7 0 5 141 2 0 11 chain 11944 chr13 114364328 + 89098931 89099282 THE1B 368 + 7 368 66930 57 178 187 23 3 4 90 chain 48639 chr13 114364328 + 89104643 89105180 L1PA3long 6157 + 5619 6156 30073 537 chain 205961 chr13 114364328 + 89194605 89197210 L1PA7 6471 + 3291 5906 9505 106 14 13 92 10 11 119 0 1 351 6 7 346 9 1 300 1 0 30 0 4 145 0 1 103 5 1 63 14 13 230 0 4 225 0 1 153 0 2 10 0 8 69 0 2 204 chain 32503 chr13 114364328 + 89208433 89208906 MER4A1 472 + 0 472 39941 53 1 0 45 10 9 123 11 12 20 13 12 138 0 1 59 chain 88226 chr13 114364328 + 89242547 89243610 MER11C 1089 + 0 1073 19997 250 0 1 62 1 5 228 6 4 4 0 1 135 0 4 43 0 1 127 0 1 207 chain 32718 chr13 114364328 + 89265428 89265792 L1PA2 6032 + 5668 6032 39739 364 chain 11506 chr13 114364328 + 89277184 89277413 L1MA3 4352 + 4119 4333 67736 81 0 4 7 2 0 6 29 18 23 2 0 24 1 0 6 1 0 29 1 0 11 1 0 5 chain 5411 chr13 114364328 + 89286411 89286498 MLT1B 390 + 297 389 83656 24 11 16 52 chain 6604 chr13 114364328 + 89293489 89293559 L1PA4 6152 - 434 504 78963 70 chain 28888 chr13 114364328 + 89324745 89325207 MER51B 395 + 0 384 43501 39 13 0 47 62 0 101 1 0 42 1 0 16 1 0 139 chain 42907 chr13 114364328 + 89456537 89457085 MLT2A2 560 + 0 560 32832 402 0 11 68 8 9 70 chain 63677 chr13 114364328 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114364328 + 89795138 89795749 L1PA8 5853 + 5009 5651 32908 48 0 36 294 2 0 177 1 0 44 2 0 43 chain 26535 chr13 114364328 + 89817046 89817399 THE1B 368 + 0 359 46923 47 0 9 116 2 1 13 8 6 167 chain 8186 chr13 114364328 + 90087665 90088012 MSTB2 466 + 70 456 74450 32 0 1 17 94 103 13 105 142 21 2 0 49 6 0 8 chain 83249 chr13 114364328 + 90113065 90114071 L1PA7 6471 + 5458 6469 20974 163 1 0 187 1 3 45 0 3 277 0 1 332 chain 3566 chr13 114364328 + 90137897 90137935 MLT1D 503 + 462 500 94688 38 chain 71943 chr13 114364328 + 90144213 90145008 L1PA5 6144 + 3643 4437 23558 466 1 0 328 chain 6750 chr13 114364328 + 90160539 90160687 L1PA13 3608 + 3346 3485 78472 10 1 0 21 20 19 26 0 1 21 2 0 4 2 0 20 6 2 15 chain 28032 chr13 114364328 + 90207957 90208261 AluYa5 310 + 0 302 44811 132 2 0 170 chain 106424 chr13 114364328 + 90219596 90220818 L1PA5 6144 + 4918 6144 17504 468 0 3 599 0 1 155 chain 21581 chr13 114364328 + 90309887 90310150 AluSc 308 + 41 304 54387 263 chain 2519 chr13 114364328 + 90315215 90315382 MER77 626 + 115 341 103561 23 1 83 12 111 88 20 chain 113430 chr13 114364328 + 90348417 90349777 LTR12C 1709 + 0 1709 16618 262 0 2 358 31 4 50 0 1 76 0 368 103 0 4 27 0 1 453 chain 46806 chr13 114364328 + 90375292 90375816 L1PA4 6152 + 5626 6151 30724 377 0 1 147 chain 22997 chr13 114364328 + 90396741 90397088 MER51B 395 + 0 384 52366 40 7 26 31 0 6 104 6 8 4 1 0 26 1 0 50 10 22 67 chain 92112 chr13 114364328 + 90456209 90457294 L1PA6 6164 + 5076 6161 19322 1085 chain 125077 chr13 114364328 + 90494636 90496238 LTR12C 1709 + 0 1709 14687 245 9 49 251 0 8 146 0 159 254 1 0 4 4 2 106 0 4 212 102 1 268 chain 8834 chr13 114364328 + 90495868 90495970 LTR12C 1709 + 1441 1542 70678 64 1 0 37 chain 22846 chr13 114364328 + 90507799 90508037 AluYb8 318 + 70 308 52594 238 chain 22138 chr13 114364328 + 90591921 90592279 MER61E 571 + 22 399 53644 60 8 21 20 20 2 88 6 30 34 1 0 37 8 9 76 chain 40765 chr13 114364328 + 90601178 90601636 L1PA5 6144 + 5675 6134 34113 398 0 1 60 chain 103889 chr13 114364328 + 90653777 90654919 L1PA3long 6157 + 5004 6144 17831 6 3 0 373 0 1 760 chain 82233 chr13 114364328 + 90659642 90660881 L1PA11 4918 + 3335 4567 21194 87 5 6 207 21 15 82 3 0 383 26 25 189 14 12 18 0 20 13 17 15 23 0 4 41 2 0 13 1 0 21 21 11 10 13 9 15 1 0 13 chain 543451 chr13 114364328 + 90663984 90669995 L1PA3long 6157 + 0 6147 1111 152 0 1 300 3 2 326 0 128 813 1 0 540 0 2 1213 1 2 729 0 2 135 0 3 5 0 1 1793 chain 22702 chr13 114364328 + 90683105 90683431 THE1A 353 + 0 341 52824 106 6 5 69 0 1 5 6 5 11 1 17 122 chain 25022 chr13 114364328 + 90706723 90707091 MLT2A1 477 + 8 382 49241 131 11 12 18 1 5 20 22 23 165 chain 24122 chr13 114364328 + 90730411 90730782 THE1A 353 + 2 353 50619 17 2 0 77 1 0 13 42 25 219 chain 38683 chr13 114364328 + 90730783 90731276 THE1A-int 1579 + 1 495 35577 402 2 1 70 0 2 19 chain 10349 chr13 114364328 + 90733736 90733925 MER47A 366 + 80 266 69703 78 0 1 20 6 8 30 31 25 24 chain 27130 chr13 114364328 + 90736313 90736661 L1P3 4156 + 3793 4139 46081 314 2 0 6 1 0 9 1 2 15 chain 88670 chr13 114364328 + 90754108 90755716 L1PB1 5432 + 3934 5103 19910 435 0 5 107 0 1 4 7 6 105 460 18 17 7 3 70 0 2 396 chain 504381 chr13 114364328 + 90812906 90819339 L1PA7 6471 + 3 6466 2988 176 7 8 129 5 12 98 1 2 286 4 3 82 3 0 1205 0 1 227 0 1 403 1 2 40 0 2 25 1 2 67 13 11 37 0 1 852 10 11 226 10 9 83 7 6 97 12 11 356 0 9 41 0 3 63 1 17 31 0 1 731 0 2 248 2 1 396 4 1 121 1 0 226 2 0 91 2 0 10 chain 28230 chr13 114364328 + 90839563 90839983 LTR7Y 441 + 0 431 44517 103 9 0 57 68 84 30 0 4 153 chain 287235 chr13 114364328 + 90839993 90843459 HERVH-int 3825 + 0 3825 7220 523 13 8 39 1 0 10 1 0 27 0 31 25 5 66 26 0 1 7 0 2 13 0 3 660 0 1 157 0 5 79 7 33 381 0 1 305 0 1 666 9 11 5 0 3 31 8 218 224 0 17 19 0 2 225 chain 28697 chr13 114364328 + 90844708 90845144 LTR7Y 441 + 0 441 43804 59 2 0 37 18 9 55 68 84 197 chain 3908 chr13 114364328 + 90881353 90881397 L1PA7 6471 + 6277 6321 92060 44 chain 12400 chr13 114364328 + 90881398 90881545 L1PA7 6471 + 6321 6465 66138 138 3 0 6 chain 23262 chr13 114364328 + 90898252 90898602 THE1D 372 + 0 355 51984 15 1 3 21 4 2 119 29 34 161 chain 55905 chr13 114364328 + 90931354 90932115 L1PA8 5853 + 5084 5853 27590 166 0 8 44 0 2 145 1 0 115 1 0 20 1 3 21 2 0 70 22 24 42 1 0 15 1 0 94 chain 29803 chr13 114364328 + 90957191 90957546 L1PA5 6144 + 5789 6144 42230 212 0 1 71 0 1 58 3 1 11 chain 31409 chr13 114364328 + 90961721 90962077 L1PA5 6144 + 5784 6140 40804 356 chain 5648 chr13 114364328 + 90970736 90970807 MER75B 242 + 166 237 82571 71 chain 123745 chr13 114364328 + 90978037 90982580 L1PA11 4918 + 3 4502 14890 17 0 1 21 2 0 34 6 3 36 1 0 13 2 0 53 1 0 5 0 1 26 10 7 52 2 0 4 0 1 47 7 8 516 18 10 17 2620 2598 88 6 7 58 0 1 54 9 11 56 22 20 309 1 0 47 0 4 134 0 8 56 4 0 11 0 1 54 25 14 66 2 0 15 2 1 14 chain 117488 chr13 114364328 + 91038220 91039557 L1PA5 6144 + 4783 6120 15975 511 1 0 707 0 1 118 chain 30652 chr13 114364328 + 91065650 91066065 MER4A1 472 + 0 418 41419 230 10 11 150 10 12 15 chain 10983 chr13 114364328 + 91150099 91150245 THE1D 372 + 224 372 68576 59 6 8 81 chain 3798 chr13 114364328 + 91177242 91177288 MER58D 378 + 318 364 92862 46 chain 49726 chr13 114364328 + 91231256 91231812 L1PA5 6144 + 5586 6142 29670 556 chain 22141 chr13 114364328 + 91410855 91411134 AluSc 308 + 27 291 53642 257 15 0 7 chain 19754 chr13 114364328 + 91425339 91425688 THE1C 375 + 0 355 56726 19 1 0 4 1 0 24 21 30 109 56 55 114 chain 4399 chr13 114364328 + 91443418 91443466 MLT1B 390 + 294 342 88892 48 chain 40120 chr13 114364328 + 91458470 91459200 L1PB1 5432 + 4680 5422 34581 23 0 2 22 8 9 76 0 1 66 11 61 163 53 41 12 18 12 52 2 1 15 1 0 45 1 0 15 3 0 15 9 0 21 1 0 14 2 0 20 8 7 20 1 0 11 5 1 17 chain 84203 chr13 114364328 + 91488411 91489432 MER11C 1089 + 0 1073 20764 346 0 41 47 5 6 159 0 1 15 2 3 157 0 8 290 chain 27585 chr13 114364328 + 91556343 91556962 L1PB1 5432 + 4930 5423 45471 71 1 2 95 111 16 24 1 0 4 7 6 10 18 12 7 0 1 40 2 1 17 1 0 45 1 0 15 2 0 6 37 25 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 14 2 0 5 chain 126706 chr13 114364328 + 91671345 91673190 L1PA8A 6298 + 4416 6290 14450 150 0 30 82 0 2 145 0 1 63 25 8 442 0 5 142 5 8 169 0 2 89 0 1 337 3 5 193 chain 54073 chr13 114364328 + 91710981 91711615 L1PA6 6164 + 5532 6161 28199 42 0 1 100 2 0 262 0 1 217 5 0 6 chain 270990 chr13 114364328 + 91832628 91835894 L1PA7 6471 + 3193 6470 7685 310 1 0 426 0 2 61 11 5 24 1 0 115 0 8 135 2 0 383 11 10 946 0 6 82 1 5 382 0 1 34 4 5 337 chain 121412 chr13 114364328 + 91876221 91877788 THE1A-int 1579 + 0 1579 15274 35 0 2 132 2 1 5 0 1 50 0 1 81 0 1 331 1 0 173 0 3 167 7 8 68 0 4 351 0 2 92 14 13 58 chain 27532 chr13 114364328 + 91877788 91878144 THE1A 353 + 0 353 45547 111 1 0 83 1 0 8 1 0 151 chain 193452 chr13 114364328 + 91974128 91976281 L1PA4 6152 + 3998 6151 9954 2080 1 0 49 0 1 23 chain 13770 chr13 114364328 + 92032074 92032422 L1PB1 5432 + 5108 5418 63921 6 3 0 24 1 0 4 5 4 12 5 1 9 12 10 42 2 1 14 2 1 36 5 0 9 1 0 15 2 0 6 15 7 18 7 4 15 2 0 24 1 0 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63973 9 1 0 7 20 15 11 2 0 39 1 0 12 2 1 16 1 0 44 1 0 15 1 0 4 19 8 19 18 13 6 2 0 23 2 1 20 1 4 10 1 0 14 chain 18881 chr13 114364328 + 92392289 92392625 L1PA14 3548 + 3147 3465 57661 67 8 7 82 1 0 29 1 0 10 14 10 27 4 2 12 1 0 5 1 0 12 5 4 41 6 0 10 chain 27475 chr13 114364328 + 92398164 92398450 AluYa5 310 + 17 303 45606 286 chain 3409 chr13 114364328 + 92411883 92411971 MADE1 96 - 0 96 95993 23 35 43 30 chain 3604 chr13 114364328 + 92429844 92429976 L1MA8 2339 + 2121 2249 94389 16 31 32 26 4 0 12 9 10 12 6 4 16 chain 7630 chr13 114364328 + 92465832 92466117 L1MA7 2200 + 1871 2170 75799 79 2 1 12 157 173 23 1 0 11 chain 109148 chr13 114364328 + 92475142 92477044 L1PA3long 6157 + 4271 6147 17158 452 20 0 145 6 0 1279 chain 499342 chr13 114364328 + 92516764 92522513 L1PA5 6144 + 65 5879 3151 519 9 1 232 0 5 95 0 1 236 1 4 223 0 49 91 0 1 443 1 0 471 0 1 1334 1 0 44 0 1 57 2 1 401 0 1 64 0 4 1052 0 10 473 chain 90191 chr13 114364328 + 92546038 92547070 L1PA4 6152 + 4013 5042 19650 130 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0 430 596 0 1 114 6 0 243 0 11 338 0 1672 37 0 4 107 chain 3576 chr13 114364328 + 93044382 93044423 LTR14B 630 + 0 41 94614 41 chain 217389 chr13 114364328 + 93062616 93065005 L1PA3long 6157 + 3768 6157 9110 2389 chain 19648 chr13 114364328 + 93070080 93070344 THE1D 372 + 106 372 56859 75 8 10 34 1 0 102 1 2 43 chain 5077 chr13 114364328 + 93070964 93071153 L1PA15 4387 + 2987 3596 85260 34 96 97 26 1 420 32 chain 39813 chr13 114364328 + 93115023 93115530 MER9a3 513 + 1 513 34808 17 0 2 23 1 2 132 0 1 78 7 6 144 3 5 102 chain 54493 chr13 114364328 + 93148315 93148963 L1PA7 6471 + 5821 6468 28048 316 0 1 321 2 0 9 chain 121308 chr13 114364328 + 93193217 93194778 THE1B-int 1605 + 2 1599 15296 430 0 25 29 1 0 93 1 2 172 1 2 265 4 0 316 2 1 56 6 7 80 0 1 60 0 13 45 chain 65160 chr13 114364328 + 93206517 93207276 LTR17 781 + 0 781 25145 327 1 0 382 1 23 41 0 1 7 chain 16598 chr13 114364328 + 93323851 93324149 L1MA2 4263 + 3818 4105 60270 99 61 58 79 11 4 10 1 0 37 chain 5208 chr13 114364328 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94251032 94251467 L1PA8 5853 + 5419 5853 43660 58 0 1 79 8 7 90 14 17 8 1 0 5 5 4 48 7 6 18 1 0 93 chain 24224 chr13 114364328 + 94293218 94293584 THE1D 372 + 5 372 50452 36 1 0 10 9 0 149 32 43 129 chain 14122 chr13 114364328 + 94315846 94316058 MER30 238 + 0 236 63419 24 1 2 4 1 0 79 0 29 55 3 0 9 5 3 31 chain 541342 chr13 114364328 + 94372201 94378191 L1PA3long 6157 + 0 6142 1248 152 0 1 624 1 129 1486 0 4 781 0 12 109 0 2 1859 0 5 978 chain 29880 chr13 114364328 + 94432420 94432859 MER57A1 433 + 0 433 42151 64 2 8 8 5 0 43 1 0 166 0 1 7 5 6 70 18 9 41 0 1 9 chain 50697 chr13 114364328 + 94498684 94499344 LTR12 884 + 0 884 29315 25 1 0 228 5 96 29 2 0 170 0 103 93 1 34 106 chain 31690 chr13 114364328 + 94522109 94522548 MLT2A1 477 + 0 477 40586 15 0 4 150 4 1 11 0 1 17 0 1 94 11 3 15 0 2 71 4 0 15 0 45 32 chain 513851 chr13 114364328 + 94526651 94532791 L1PA6 6164 + 0 6160 2578 392 20 21 36 8 0 115 7 6 183 0 1 33 0 17 924 1 0 257 1 0 191 0 1 155 0 2 842 3 0 5 1 4 6 0 1 113 1 2 16 0 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974 23445 166 20 19 4 0 1 106 0 1 54 0 1 66 0 1 40 0 4 50 8 1 145 3 2 117 0 7 41 3 0 12 27 15 121 chain 95143 chr13 114364328 + 95306328 95307409 L1PA4 6152 + 5069 6151 18889 210 0 1 346 8 8 360 0 1 43 0 1 57 1 0 36 2 0 14 0 1 4 chain 11157 chr13 114364328 + 95308424 95308560 MER4A1 472 + 54 189 68334 81 1 0 54 chain 79460 chr13 114364328 + 95316839 95317805 LTR13A 966 + 0 966 21751 128 0 1 255 1 0 357 11 12 18 1 0 195 chain 97585 chr13 114364328 + 95350246 95351313 L1PA3long 6157 + 5076 6144 18575 704 0 1 363 chain 19897 chr13 114364328 + 95361500 95363475 LTR8 732 + 68 692 56537 39 4 8 53 629 0 109 1036 309 22 0 3 38 2 0 43 chain 6672 chr13 114364328 + 95383279 95383372 L1MB3 1562 + 1433 1524 78723 5 2 0 86 chain 10458 chr13 114364328 + 95579024 95579149 MER85 139 + 4 139 69500 86 0 10 39 chain 8167 chr13 114364328 + 95637696 95637800 MLT1B 390 + 236 340 74490 104 chain 23110 chr13 114364328 + 95712884 95713194 THE1C 375 + 65 375 52196 159 0 1 47 10 10 68 1 0 25 chain 18375 chr13 114364328 + 95762057 95762271 AluSp 311 + 77 291 58267 214 chain 246426 chr13 114364328 + 95828137 95831023 L1PA5 6144 + 2947 5879 8319 302 0 3 257 2 1 1067 1 42 712 0 2 193 11 12 341 chain 89300 chr13 114364328 + 95840053 95841215 L1PA8 5853 + 4703 5853 19799 303 0 1 135 8 0 343 2 0 5 0 2 53 0 1 18 1 0 44 2 0 66 32 31 35 2 1 19 2 1 92 chain 26126 chr13 114364328 + 95852911 95853284 THE1C 375 + 0 375 47523 85 1 2 92 0 2 5 22 20 144 1 0 5 0 2 18 chain 3995 chr13 114364328 + 95898090 95898160 L2a 937 + 330 394 91477 8 0 6 10 12 0 40 chain 506407 chr13 114364328 + 95906810 95914254 L1PA6 6164 + 0 6162 2916 138 0 20 36 1 2 4 1 0 36 0 2 280 0 2 47 1 0 112 0 7 75 5 13 13 0 17 99 0 4 815 1342 0 480 0 1 82 0 1 44 1 3 264 0 1 316 0 1 274 0 1 40 0 3 463 1 0 497 0 1 4 1 0 1209 0 3 76 1 0 128 0 1 282 0 3 76 15 1 16 18 0 8 1 19 142 chain 47759 chr13 114364328 + 95909224 95909747 L1PA2 6032 + 5491 6014 30374 523 chain 307466 chr13 114364328 + 95916379 95920681 L1PA11 4918 + 7 4502 6672 32 6 4 35 4 1 36 1 0 13 2 0 52 6 5 28 2 0 5 2 1 192 13 13 35 8 9 55 8 13 7 0 1 59 1 0 152 2 1 98 1 2 37 35 1 48 0 20 369 0 1 17 1 0 33 0 9 26 3 12 23 7 15 62 1 0 169 0 1 4 2 1 109 0 1 19 0 4 166 0 1 153 0 3 31 66 68 74 17 168 138 0 3 179 0 1 90 0 1 34 0 1 36 0 2 105 1 0 127 0 1 175 0 14 102 1 0 260 0 3 226 0 7 169 7 1 137 0 4 14 9 12 52 1 0 4 11 9 66 2 0 14 1 0 14 chain 43154 chr13 114364328 + 95954254 95954875 MER4B 649 + 0 629 32684 59 0 1 200 0 1 88 25 37 33 35 30 113 1 0 67 chain 4532 chr13 114364328 + 95954927 95954981 Tigger4b 360 + 306 360 88151 54 chain 99192 chr13 114364328 + 95964661 95965753 L1PA3long 6157 + 5063 6157 18387 245 1 5 601 1 0 226 1 0 17 chain 128023 chr13 114364328 + 95976618 95978188 L1PA8 5853 + 4259 5853 14274 167 0 4 383 1 0 192 0 1 4 2 0 96 0 7 170 0 2 279 1 0 44 2 0 50 3 22 8 1 0 46 8 7 19 1 0 93 chain 48302 chr13 114364328 + 95979718 95980592 L1PB1 5432 + 4535 5422 30180 63 7 11 19 0 2 32 1 0 128 27 26 96 12 21 46 9 4 86 16 47 22 1 0 7 0 2 9 22 17 47 2 1 16 1 0 45 1 0 14 1 0 4 2 0 9 15 7 10 25 20 24 1 0 22 2 1 11 1 0 18 chain 38618 chr13 114364328 + 96001093 96001549 LTR7 482 + 0 482 35628 16 6 0 248 1 32 69 1 2 115 chain 3153 chr13 114364328 + 96035046 96035081 L1PA11 4918 + 3629 3664 98343 35 chain 17704 chr13 114364328 + 96035085 96035309 L1PA11 4918 + 3691 3915 59001 173 2 0 5 0 2 44 chain 46093 chr13 114364328 + 96035309 96035976 L1PA11 4918 + 3918 4567 31016 290 0 3 117 5 0 65 2 1 81 2 0 12 2 1 20 4 0 9 8 3 12 9 7 13 3 2 13 chain 167055 chr13 114364328 + 96042083 96046476 L1PB1 5432 + 12 4458 5237 12 2 1 166 0 9 76 4 3 127 2 0 66 0 1 79 3 1 49 0 1 53 6 13 399 4 0 88 0 1 247 0 6 135 0 4 155 1 0 50 1 0 5 0 1 25 4 8 235 3 0 26 1 2 157 0 7 147 7 11 38 0 1 30 1 4 43 2 0 51 1 0 4 0 5 271 10 12 5 2 0 49 0 3 30 5 7 67 3 2 134 1 9 576 4 1 11 0 5 226 0 1 241 0 2 27 2 1 224 chain 427864 chr13 114364328 + 96046489 96051484 L1PA5 6144 + 0 6144 4779 553 1 0 547 11 1145 547 0 2 264 0 1 101 1 0 10 3 0 88 0 2 226 0 4 235 0 1 228 0 3 1337 2 1 686 9 16 6 4 0 75 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213 87110 56 chain 14470 chr13 114364328 + 98996571 98996786 MER30 238 + 0 229 62936 24 0 1 55 6 0 19 0 1 4 4 0 6 3 28 52 3 0 39 chain 14195 chr13 114364328 + 99021757 99021972 L1PA8 5853 + 5600 5847 63325 9 2 0 30 3 40 9 2 1 51 2 1 19 1 0 87 chain 26829 chr13 114364328 + 99072563 99073269 LTR35 598 + 51 446 46501 19 1 0 20 4 0 16 2 0 23 16 6 53 302 4 19 1 0 146 0 4 68 0 1 16 chain 3658 chr13 114364328 + 99114877 99114934 L1PB3 3668 + 3529 3582 93929 37 7 3 13 chain 79086 chr13 114364328 + 99115661 99116535 L1PA3long 6157 + 5278 6152 21846 231 0 1 360 1 0 282 chain 14744 chr13 114364328 + 99119786 99120078 THE1B 368 + 0 304 62606 33 0 15 60 13 15 54 69 64 63 chain 10720 chr13 114364328 + 99126163 99126317 L1PB2 3958 + 3653 3803 69014 28 1 0 64 6 4 25 1 0 29 chain 3116 chr13 114364328 + 99127455 99127491 L1MC1 2226 + 462 498 98644 36 chain 70173 chr13 114364328 + 99140412 99141439 MER11A 1151 + 0 1151 23961 79 11 19 95 1 0 6 1 0 90 14 11 169 18 19 148 0 4 32 29 34 37 0 4 67 0 1 19 7 65 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114364328 + 99460942 99461207 THE1D 372 + 105 372 59247 49 44 46 172 chain 37012 chr13 114364328 + 99479510 99479977 MER4-int 2692 + 73 546 36727 26 1 0 16 2 0 196 0 9 226 chain 68157 chr13 114364328 + 99491433 99492276 L1PA8 5853 + 5009 5853 24416 87 0 3 94 1 6 365 1 0 45 2 0 70 2 1 7 2 1 56 1 0 16 1 0 93 chain 6217 chr13 114364328 + 99534408 99534479 LTR17 781 + 255 326 80285 71 chain 3680 chr13 114364328 + 99605475 99605524 MER96B 391 - 119 167 93745 6 1 0 42 chain 23008 chr13 114364328 + 99699108 99699386 AluSp 311 + 5 282 52346 273 1 0 4 chain 25896 chr13 114364328 + 100008245 100008561 AluSp 311 + 0 311 47874 22 8 0 69 0 3 217 chain 17955 chr13 114364328 + 100024910 100025485 Tigger2 2703 + 1244 1499 58697 43 14 0 10 4 11 73 313 0 118 chain 4668 chr13 114364328 + 100050117 100050195 MER61C 433 + 0 78 87447 15 1 0 30 5 6 27 chain 121212 chr13 114364328 + 100077329 100078761 LTR12C 1709 + 0 1709 15315 67 3 0 583 0 278 184 1 0 4 4 2 78 0 2 26 0 4 393 5 4 84 chain 10027 chr13 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114364328 + 101313565 101314324 L1PA4 6152 + 5383 6152 24698 73 0 12 678 2 0 6 chain 16804 chr13 114364328 + 101354861 101355250 MSTB 430 + 0 391 60026 23 5 4 10 20 22 62 31 32 24 66 67 72 5 4 71 chain 299653 chr13 114364328 + 101355250 101359193 L1PA8 5853 + 1895 5853 6843 131 3 1 652 1 5 222 2 3 30 6 2 105 0 2 85 7 21 151 6 5 79 4 0 211 0 2 301 1 3 88 0 1 345 1 0 328 3 0 7 28 35 148 9 0 61 6 1 89 2 0 61 12 14 355 0 1 124 1 0 18 1 0 25 3 1 40 18 35 6 1 0 55 1 0 16 1 0 93 chain 60182 chr13 114364328 + 101379109 101379835 L1PA7 6471 + 5702 6432 26326 76 1 2 322 1 0 6 1 3 83 1 0 103 0 2 74 0 1 58 chain 16801 chr13 114364328 + 101400838 101401093 THE1D 372 + 94 365 60030 99 0 2 29 7 22 37 7 9 37 5 2 34 chain 185130 chr13 114364328 + 101439892 101442450 L1PB1 5432 + 2901 5422 10328 462 0 4 364 2 0 7 7 0 159 0 1 242 0 9 61 3 4 282 12 16 37 1 0 77 3 0 17 19 20 142 1 9 286 2 5 11 27 0 17 2 1 12 1 0 8 9 5 9 0 3 34 0 1 6 1 0 5 5 4 15 4 2 43 74 57 8 2 0 24 1 0 21 1 0 13 1 0 18 chain 9135 chr13 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101988423 101988866 L1PA4 6152 + 5708 6151 35541 294 1 0 36 0 1 112 chain 23785 chr13 114364328 + 102004661 102005013 THE1C 375 + 0 360 51133 32 10 17 76 3 0 55 1 2 21 1 0 6 1 5 146 chain 35001 chr13 114364328 + 102047451 102047831 L1PA4 6152 + 5763 6143 38017 380 chain 130834 chr13 114364328 + 102068291 102069836 LTR12C 1709 + 0 1709 13943 265 1 2 251 1 0 49 15 16 66 0 1 36 0 1 49 0 160 215 1 0 6 2 0 107 0 4 481 chain 27676 chr13 114364328 + 102082672 102082973 AluYa5 310 + 0 297 45361 126 4 0 171 chain 338892 chr13 114364328 + 102154111 102165805 L1PA4 6152 + 1579 6136 6090 5 0 2 669 0 2 55 0 2 562 0 1 287 1 2 84 0 3 429 1 0 667 5 9 481 7703 544 10 0 3 598 0 1 101 0 4 36 chain 5770 chr13 114364328 + 102169844 102169973 MER3 215 + 66 196 82036 44 44 45 41 chain 24895 chr13 114364328 + 102200828 102201131 AluY 311 + 8 311 49441 118 0 1 96 1 2 57 2 0 29 chain 54361 chr13 114364328 + 102353973 102354753 MER4A 717 + 2 717 28100 121 1 0 274 1 0 94 5 0 84 0 2 6 2 0 38 63 4 50 0 1 41 chain 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103459435 103459727 L1PB1 5432 + 5126 5390 63837 12 1 0 9 1 0 9 2 0 3 2 0 9 2 0 52 2 1 15 1 0 34 45 25 6 0 7 19 2 0 4 1 0 16 2 0 17 0 1 5 1 0 20 chain 56623 chr13 114364328 + 103459731 103460355 L1PA2 6032 + 5396 6021 27379 64 0 1 560 chain 58194 chr13 114364328 + 103522238 103522960 L1PA8 5853 + 5136 5853 26904 383 1 0 45 1 0 45 2 0 70 1 0 9 1 2 54 1 0 16 1 0 53 0 1 39 chain 21148 chr13 114364328 + 103547608 103547843 L1PA3long 6157 + 5746 5981 54951 235 chain 84949 chr13 114364328 + 103560033 103561064 L1PA7 6471 + 5376 6461 20631 100 0 54 89 1 0 478 0 2 8 7 5 40 0 1 308 chain 4990 chr13 114364328 + 103593601 103593754 MLT1D 503 + 329 484 85701 15 1 0 15 0 1 5 74 76 43 chain 13655 chr13 114364328 + 103596334 103596543 L1PA8 5853 + 5647 5853 64077 18 0 1 16 1 0 8 1 0 54 2 1 62 14 13 33 chain 119627 chr13 114364328 + 103599798 103601283 LTR12C 1709 + 0 1709 15588 338 0 43 17 4 3 85 1 2 162 0 119 68 1 0 238 0 47 15 1 11 76 0 4 131 3 2 101 11 14 233 chain 21300 chr13 114364328 + 103636455 103636850 MSTA 426 + 0 405 54765 96 20 12 22 21 22 42 40 48 55 12 20 67 0 1 20 chain 16955 chr13 114364328 + 103649503 103649687 L1PA3long 6157 + 5711 5895 59859 184 chain 4276 chr13 114364328 + 103654134 103654183 L1MB1 2102 + 1957 2006 89644 49 chain 39525 chr13 114364328 + 103706676 103707115 L1PA4 6152 + 5701 6141 34998 337 0 1 102 chain 22698 chr13 114364328 + 103710671 103710985 THE1D 372 + 45 372 52830 19 5 15 22 5 4 39 0 1 44 0 3 180 chain 6861 chr13 114364328 + 103823624 103823723 THE1C 375 + 1 102 78098 53 9 11 37 chain 30435 chr13 114364328 + 103942946 103943330 MLT2A1 477 + 0 381 41644 169 4 1 211 chain 55445 chr13 114364328 + 104051232 104051826 L1HS 6032 + 5438 6032 27734 594 chain 78070 chr13 114364328 + 104081630 104082482 L1PA3long 6157 + 4888 5740 22081 852 chain 8297 chr13 114364328 + 104086017 104086126 L1PB2 3958 + 3266 3372 74167 41 2 0 56 1 0 9 chain 58066 chr13 114364328 + 104117471 104118143 L1PA5 6144 + 5464 6124 26942 498 14 0 32 0 1 82 0 1 46 chain 4652 chr13 114364328 + 104151540 104151595 MLT2A1 477 + 422 477 87524 55 chain 119395 chr13 114364328 + 104192707 104194278 THE1A-int 1579 + 0 1574 15630 633 51 54 298 11 10 571 0 1 7 chain 28911 chr13 114364328 + 104220058 104220407 L1PA5 6144 + 5780 6130 43465 192 15 16 142 chain 13181 chr13 114364328 + 104269146 104269414 MSTB 430 + 131 417 64809 7 14 0 20 2 0 6 32 43 7 6 0 8 0 12 70 0 17 77 0 1 4 1 0 14 chain 3212 chr13 114364328 + 104337942 104337986 LTR12B 2670 + 2464 2504 97783 13 4 0 27 chain 4544 chr13 114364328 + 104381978 104382027 LTR12C 1709 + 1658 1707 88095 49 chain 27134 chr13 114364328 + 104388312 104388704 MER9a3 513 + 0 513 46076 17 6 31 50 1 0 11 0 3 5 9 75 67 0 17 17 2 12 129 0 1 78 chain 13184 chr13 114364328 + 104439161 104439309 L1PA4 6152 + 5975 6128 64805 20 0 5 128 chain 114209 chr13 114364328 + 104444518 104446023 L1PA8 5853 + 4311 5814 16519 17 1 0 6 2 0 300 0 1 109 0 2 108 0 5 30 5 1 111 12 10 74 0 7 258 2 0 37 7 7 127 1 0 42 4 3 42 2 0 71 1 0 13 0 1 47 2 1 19 1 0 54 chain 54779 chr13 114364328 + 104452786 104453604 L1PA13 3608 + 2687 3497 27954 212 0 1 17 0 1 87 0 4 92 51 40 19 1 0 66 2 0 48 2 0 61 1 0 54 1 0 7 2 0 18 0 7 22 2 0 5 2 0 18 1 0 16 0 4 11 chain 3539 chr13 114364328 + 104485366 104485531 L1MA8 2339 + 2183 2322 94943 15 6 0 25 96 76 23 chain 25312 chr13 114364328 + 104505709 104506143 L1PA15 4387 + 3908 4328 48764 24 1 0 63 2 1 108 1 0 26 1 0 55 1 0 22 22 17 25 31 29 36 3 1 13 chain 5414 chr13 114364328 + 104573826 104573892 MLT1E3 631 + 68 135 83634 42 0 1 24 chain 21946 chr13 114364328 + 104687923 104688180 L1P1 4361 + 4072 4327 53907 79 1 0 154 1 0 22 chain 17619 chr13 114364328 + 104714773 104714963 L1PA4 6152 + 5961 6151 59104 190 chain 51560 chr13 114364328 + 104715900 104716491 LTR10C 591 + 0 591 29014 591 chain 3443 chr13 114364328 + 104764038 104764077 MSTA 426 + 387 426 95704 39 chain 78992 chr13 114364328 + 104819649 104820545 L1PA6 6164 + 5260 6156 21874 896 chain 368415 chr13 114364328 + 104920567 104926621 L1PB1 5432 + 32 5413 5691 15 0 7 309 12 13 13 8 9 49 0 1 97 2 1 471 1 6 4 0 1 9 0 2 226 14 198 87 3 0 5 0 3 13 5 3 157 11 13 67 0 1 680 2 0 331 1 2 55 6 9 37 0 1 16 35 29 11 10 10 12 7 6 231 3 0 336 3 0 24 0 1 9 15 17 97 2 1 22 10 3 460 843 6 16 0 1 111 0 1 262 12 14 63 0 15 103 2 0 290 18 9 11 1 0 21 1 0 11 20 15 6 1 0 14 2 0 30 0 1 8 2 1 16 1 0 44 1 0 15 23 12 19 24 19 24 1 0 21 1 0 13 1 0 9 chain 24616 chr13 114364328 + 104929950 104930294 THE1B 368 + 13 366 49847 31 9 24 13 7 6 82 1 0 22 3 1 112 2 0 62 chain 132667 chr13 114364328 + 104933884 104935418 L1PA5 6144 + 4344 5880 13762 631 0 1 286 3 5 27 1 0 586 chain 4175 chr13 114364328 + 104997616 104997660 L1PA5 6144 + 5693 5737 90293 44 chain 32474 chr13 114364328 + 104997660 104998036 L1PA5 6144 + 5763 6140 39962 240 0 1 136 chain 29572 chr13 114364328 + 105055752 105056072 AluYb8 318 + 0 318 42518 132 2 0 186 chain 162340 chr13 114364328 + 105133202 105151593 L1PA4 6152 + 3980 6143 11590 357 0 2 123 0 1 841 16233 1 698 0 1 139 chain 18586 chr13 114364328 + 105134523 105134732 L1PA4 6152 + 5308 5517 58011 209 chain 44691 chr13 114364328 + 105203534 105204098 L1PA7 6471 + 5903 6469 31744 52 6 11 493 3 0 10 chain 25070 chr13 114364328 + 105295314 105295665 THE1C 375 + 0 363 49168 107 9 10 68 1 0 48 0 11 56 0 1 33 2 3 13 1 0 13 chain 201157 chr13 114364328 + 105299184 105301362 L1PA2 6032 + 3854 6032 9679 2178 chain 21757 chr13 114364328 + 105315115 105315422 THE1A 353 + 0 305 54160 102 23 22 74 1 0 107 chain 460484 chr13 114364328 + 105383251 105388338 L1PA3long 6157 + 1053 6152 4115 1135 0 2 202 0 4 1634 0 6 2116 chain 4791 chr13 114364328 + 105423332 105423411 L1PB3 3668 + 3482 3566 86741 16 1 8 22 4 2 36 chain 45232 chr13 114364328 + 105519223 105520186 L1PB1 5432 + 4663 5422 31459 61 0 2 123 4 12 30 0 12 200 3 0 8 197 8 19 2 1 5 1 0 14 20 14 47 7 2 15 6 5 41 1 0 14 1 0 4 18 8 18 3 1 5 1 0 14 2 0 24 1 0 22 1 0 10 1 0 20 chain 24639 chr13 114364328 + 105586732 105587023 L1PA7 6471 + 6173 6464 49816 291 chain 21511 chr13 114364328 + 105694746 105695117 THE1B 368 + 0 368 54495 73 71 72 25 6 4 18 2 0 176 chain 9611 chr13 114364328 + 105715141 105715432 L1MA4 2864 + 2558 2809 71241 85 1 0 8 144 107 7 2 0 44 chain 91299 chr13 114364328 + 105743663 105744669 L1PA3long 6157 + 5150 6155 19451 861 1 0 144 chain 71110 chr13 114364328 + 105746333 105747478 L1PA7 6471 + 5633 6470 23741 70 1 0 434 307 0 333 chain 138480 chr13 114364328 + 105753591 105755144 L1PA4 6152 + 4593 6143 13221 1280 3 0 270 chain 3901 chr13 114364328 + 105782911 105782957 Tigger2b_Pri 1066 + 165 211 92115 46 chain 8215 chr13 114364328 + 105813036 105813148 L1PA8 5853 + 5742 5853 74365 18 2 1 92 chain 6853 chr13 114364328 + 105857615 105857696 LTR26 622 + 526 607 78128 81 chain 3085 chr13 114364328 + 105867276 105867311 MER20 218 + 116 151 98907 35 chain 10350 chr13 114364328 + 105924089 105924273 Tigger1 2417 + 285 951 69702 42 22 500 39 13 15 59 0 2 9 chain 24570 chr13 114364328 + 105929644 105930030 MLT2A2 560 + 0 498 49904 49 0 1 130 1 0 16 30 31 23 3 0 42 0 98 10 2 13 45 0 5 35 chain 7629 chr13 114364328 + 105985665 105985762 MLT1D 503 + 406 503 75801 97 chain 56160 chr13 114364328 + 106000000 106000608 L1PA3long 6157 + 5526 6134 27520 608 chain 4553 chr13 114364328 + 106055921 106055970 MER5A 189 + 119 168 88050 49 chain 8954 chr13 114364328 + 106067718 106067831 L1MB8 1703 + 1452 1564 72662 41 1 0 71 chain 11090 chr13 114364328 + 106105818 106105996 MER30 238 + 31 229 68427 84 14 43 9 6 0 32 3 0 30 chain 4199 chr13 114364328 + 106108483 106108551 MER5A 189 + 20 89 90128 51 5 6 12 chain 46532 chr13 114364328 + 106165512 106166074 L1P2 5180 + 1693 2254 30828 259 1 0 107 6 6 189 chain 45573 chr13 114364328 + 106189431 106190171 L1PB1 5432 + 4708 5422 31276 155 0 1 239 4 3 8 1 0 24 1 0 5 2 1 12 8 4 8 0 2 50 2 1 9 7 6 31 0 2 11 1 0 14 26 14 18 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 19672 chr13 114364328 + 106193291 106193518 L1PA7 6471 + 6234 6461 56821 227 chain 553772 chr13 114364328 + 106213540 106219555 L1PA2 6032 + 0 6032 498 479 0 1 541 0 2 2108 0 4 2564 0 3 153 0 9 155 2 0 13 chain 18840 chr13 114364328 + 106297249 106297604 MSTA 426 + 5 411 57726 92 12 16 41 15 21 52 25 23 22 0 23 16 6 9 45 9 26 20 chain 4578 chr13 114364328 + 106298052 106298120 Charlie1a 1436 + 920 990 87923 31 6 8 31 chain 177205 chr13 114364328 + 106307563 106309591 L1PA6 6164 + 4119 6158 10716 246 0 4 279 0 1 613 0 2 55 0 1 78 1 0 612 0 1 26 0 3 118 chain 3549 chr13 114364328 + 106384176 106384218 L1MA4 2864 + 2768 2810 94852 42 chain 32699 chr13 114364328 + 106605114 106605509 MER41A 554 + 0 395 39765 395 chain 6803 chr13 114364328 + 106606186 106606275 L1MA9 1812 + 265 355 78309 70 1 2 18 chain 23011 chr13 114364328 + 106610060 106610420 THE1D 372 + 2 372 52341 53 16 23 26 0 1 61 24 27 147 1 0 32 chain 35846 chr13 114364328 + 106611657 106612183 MLT2A2 560 + 0 548 37500 58 0 1 135 12 15 188 5 16 24 0 7 40 14 0 7 17 31 26 chain 30842 chr13 114364328 + 106650211 106650597 MLT2A1 477 + 0 383 41271 169 4 1 213 chain 21299 chr13 114364328 + 106722034 106722318 L1PA6 6164 + 5886 6162 54770 116 0 8 10 15 0 93 2 1 48 chain 57227 chr13 114364328 + 106825016 106825681 L1PA5 6144 + 5461 6130 27188 398 0 3 91 6 7 170 chain 19392 chr13 114364328 + 106862426 106862844 L1PB1 5432 + 5031 5418 57136 72 13 11 24 1 0 9 1 0 9 10 6 5 2 0 46 7 6 17 1 0 45 1 0 15 3 0 6 16 6 19 8 5 14 2 0 18 11 13 14 1 0 13 1 0 14 chain 5437 chr13 114364328 + 106863496 106863594 MER3 215 + 13 132 83520 13 16 37 69 chain 70500 chr13 114364328 + 106992352 106993248 L1PA8A 6298 + 5388 6291 23868 101 0 3 208 0 3 461 14 17 6 2 0 104 chain 43722 chr13 114364328 + 107013185 107013721 MLT2A2 560 + 0 548 32306 203 0 1 118 0 11 215 chain 35825 chr13 114364328 + 107023237 107024154 LTR9B 643 + 3 643 37514 123 70 17 51 14 16 124 4 3 73 289 62 28 7 0 10 7 17 16 5 0 32 24 28 40 chain 2991 chr13 114364328 + 107023374 107023409 LTR9B 643 + 84 119 99946 35 chain 30992 chr13 114364328 + 107026776 107027140 L1PA6 6164 + 5792 6156 41135 111 0 1 112 1 0 140 chain 60547 chr13 114364328 + 107090268 107091035 L1PA8 5853 + 5091 5853 26219 471 1 0 47 2 0 69 2 1 8 2 1 52 2 1 22 1 0 72 0 2 16 chain 27717 chr13 114364328 + 107146358 107146809 MLT2A2 560 + 0 560 45294 55 10 12 101 62 59 68 8 118 147 chain 55271 chr13 114364328 + 107176969 107177765 L1MA3 4352 + 2327 3097 27789 241 0 5 16 1 0 100 31 0 169 14 16 86 0 4 6 6 1 126 chain 3832 chr13 114364328 + 107180025 107180103 L1MA3 4352 + 4253 4326 92621 5 2 0 24 8 6 29 1 0 9 chain 56571 chr13 114364328 + 107183319 107184192 L1PA7 6471 + 5786 6470 27403 580 188 0 86 1 0 18 chain 59995 chr13 114364328 + 107194290 107195183 L1PB2 3958 + 2784 3672 26377 4 0 1 66 28 31 38 1 0 278 9 15 84 12 10 51 1 0 16 4 0 61 2 0 17 4 0 81 4 3 59 0 1 17 1 0 55 chain 20998 chr13 114364328 + 107201334 107201605 AluY 311 + 40 304 55127 248 2 0 7 5 0 9 chain 20927 chr13 114364328 + 107298107 107298380 AluY 311 + 40 311 55222 83 1 0 4 1 2 144 2 0 38 chain 56099 chr13 114364328 + 107311641 107312267 L1PA4 6152 + 5211 5836 27538 90 1 0 535 chain 51504 chr13 114364328 + 107313306 107314044 MER4A 717 + 1 717 29041 88 3 4 35 29 3 186 20 18 138 1 5 30 0 1 208 chain 26092 chr13 114364328 + 107343304 107343659 THE1B 368 + 0 366 47585 44 6 21 43 1 0 64 1 0 19 3 1 174 chain 38180 chr13 114364328 + 107351292 107351782 MER65D 500 + 0 500 35924 129 2 16 46 0 1 151 4 0 94 1 0 63 chain 56774 chr13 114364328 + 107391228 107391980 MER4E 760 + 0 751 27334 17 0 1 331 1 2 109 2 4 20 0 4 39 11 0 20 1 2 61 1 0 128 0 2 11 chain 67633 chr13 114364328 + 107500365 107501112 L1PA3long 6157 + 5408 6157 24538 502 0 2 245 chain 89488 chr13 114364328 + 107535305 107536478 L1PA5 6144 + 4230 5383 19759 91 19 0 900 6 5 157 chain 42233 chr13 114364328 + 107579831 107580292 L1PA2 6032 + 5403 5864 33226 461 chain 46601 chr13 114364328 + 107596233 107596823 L1PA7 6471 + 5872 6460 30811 432 7 4 16 1 0 5 0 1 58 1 2 70 chain 11613 chr13 114364328 + 107650433 107650728 L1PB1 5432 + 5158 5430 67548 11 3 1 50 2 1 17 1 0 43 79 65 24 1 0 21 1 0 13 4 3 13 1 0 4 1 0 6 chain 191115 chr13 114364328 + 107654381 107657159 L1PB1 5432 + 2699 5422 10062 127 20 17 47 4 7 110 4 1 596 6 0 83 1 0 49 1 0 127 1 0 129 8 7 27 7 9 492 2 5 93 4 1 46 2 1 5 0 1 125 1 0 30 18 19 245 14 16 24 1 0 4 3 2 13 20 14 49 2 1 16 1 0 45 1 0 14 19 0 9 9 1 20 12 9 11 2 0 24 1 0 22 1 0 12 4 3 15 chain 5353 chr13 114364328 + 107686711 107686793 L1PA17 2846 + 2611 2691 83942 19 5 4 15 1 0 42 chain 24424 chr13 114364328 + 107693168 107693477 L1PA6 6164 + 5850 6160 50133 154 8 6 7 0 3 140 chain 89752 chr13 114364328 + 107727578 107728695 L1PA8 5853 + 4744 5850 19725 266 11 9 70 5 0 285 0 3 187 1 0 46 2 0 72 2 1 5 1 0 52 2 1 19 2 1 89 chain 4013 chr13 114364328 + 107739031 107739076 L1PA8 5853 + 5564 5609 91358 45 chain 8357 chr13 114364328 + 107739078 107739204 L1PA8 5853 + 5609 5734 74007 6 0 1 63 1 0 9 9 8 38 chain 9375 chr13 114364328 + 107739212 107739324 L1PA8 5853 + 5741 5853 71760 112 chain 86797 chr13 114364328 + 107768755 107769703 L1PA2 6032 + 5084 6032 20261 948 chain 22480 chr13 114364328 + 107772019 107772337 MER41C 542 + 195 535 53147 116 17 38 36 2 3 147 chain 165257 chr13 114364328 + 107782022 107783880 SVA_D 2077 + 0 2077 11395 20 0 3 192 0 1 696 1 0 35 10 0 45 0 1 10 0 178 158 0 50 377 1 0 304 2 0 7 chain 31129 chr13 114364328 + 107784597 107785038 L1P5 443 + 3 433 41033 4 1 0 126 0 8 10 1 0 3 8 0 255 9 0 24 chain 12047 chr13 114364328 + 107785345 107785584 L1PB1 5432 + 5109 5327 66763 5 1 0 24 1 0 9 16 11 9 2 0 53 2 1 12 2 4 44 1 0 15 3 0 11 14 5 15 chain 25448 chr13 114364328 + 107891596 107891875 L1PA2 6032 + 5753 6031 48557 127 1 0 151 chain 37094 chr13 114364328 + 107910742 107911204 LTR2 463 + 0 463 36680 362 12 13 88 chain 20917 chr13 114364328 + 107951661 107952135 L1MA1 4479 + 3669 4129 55238 15 39 38 17 2 0 14 19 20 54 1 0 19 16 13 88 31 26 64 44 43 27 2 0 22 chain 3803 chr13 114364328 + 107970203 107970249 THE1A-int 1579 + 1525 1574 92829 41 0 3 5 chain 24526 chr13 114364328 + 107970261 107970597 THE1A 353 + 0 353 49985 26 0 1 82 2 1 67 5 21 102 1 2 51 chain 77675 chr13 114364328 + 108016991 108018010 MER11A 1151 + 0 1151 22167 55 0 99 43 0 3 28 1 0 64 8 4 147 0 1 93 0 1 146 0 1 150 24 56 29 0 1 191 2 1 38 chain 40974 chr13 114364328 + 108041834 108042370 PRIMA4_LTR 623 + 0 623 33989 175 0 23 61 2 4 69 0 59 43 0 1 111 4 6 71 chain 60569 chr13 114364328 + 108042450 108043284 MER11A 1151 + 0 1144 26209 85 0 91 118 4 0 149 0 1 29 19 13 50 1 2 44 0 189 50 8 41 26 1 2 30 0 1 46 2 0 16 0 1 127 0 4 29 chain 5114 chr13 114364328 + 108062965 108063049 L1MA3 4352 + 44 127 85082 60 11 10 13 chain 59285 chr13 114364328 + 108067615 108069210 MER4E1 777 + 0 769 26574 25 0 1 142 339 0 115 472 3 104 0 1 157 19 0 117 14 13 91 chain 38146 chr13 114364328 + 108084434 108084881 LTR10F 562 + 0 562 35952 116 0 115 331 chain 4201 chr13 114364328 + 108089759 108090140 MLT1C 463 + 57 463 90116 26 35 26 15 200 236 31 53 51 21 chain 238951 chr13 114364328 + 108170577 108174331 L1PA14 3548 + 90 3485 8496 32 43 0 8 0 40 34 8 5 8 1 0 15 8 7 29 2 0 27 16 14 147 1 0 37 0 1 270 1 3 283 5 6 153 6 5 230 8 6 7 0 1 30 0 2 6 0 5 18 0 3 5 16 8 260 2 1 439 0 1 4 1 0 146 2 0 73 5 6 70 6 5 148 1 0 17 3 10 61 320 0 162 4 2 13 2 0 47 2 0 5 2 0 109 4 0 17 9 6 84 1 0 111 1 0 10 5 1 34 32 28 9 1 0 41 6 0 10 1 0 20 chain 46361 chr13 114364328 + 108178060 108178740 LTR12_ 688 + 0 688 30901 97 7 23 18 18 2 38 5 29 17 1 0 67 24 0 45 1 2 214 0 8 128 chain 34722 chr13 114364328 + 108267774 108268353 L1PB1 5432 + 4877 5422 38210 223 7 6 8 1 0 20 1 0 13 1 0 4 9 4 4 0 1 7 2 0 53 2 1 57 3 2 16 2 0 6 1 0 11 9 0 11 15 10 12 2 0 24 1 0 21 2 1 12 1 0 18 chain 27098 chr13 114364328 + 108431834 108432122 AluYa5 310 + 0 287 46128 97 1 0 190 chain 2731 chr13 114364328 + 108443068 108443141 MLT1F1 559 + 377 509 102121 14 30 89 29 chain 20266 chr13 114364328 + 108450538 108450917 MSTA 426 + 1 426 56057 107 21 51 35 69 63 20 0 1 15 3 24 109 chain 18427 chr13 114364328 + 108471221 108471599 THE1D 372 + 0 372 58198 46 28 0 11 8 18 45 23 26 39 5 8 31 16 22 79 1 2 9 4 3 33 chain 3263 chr13 114364328 + 108487175 108487232 L1PB1 5432 + 5346 5404 97349 24 1 0 15 4 6 13 chain 15352 chr13 114364328 + 108488818 108489045 L1MA2 4263 + 145 378 61848 17 2 0 30 0 2 56 2 1 80 1 8 39 chain 116892 chr13 114364328 + 108654544 108656105 THE1A-int 1579 + 0 1574 16072 473 7 8 121 63 63 320 10 23 140 4 3 423 chain 23513 chr13 114364328 + 108656110 108656463 THE1A 353 + 0 353 51569 46 0 1 49 1 0 10 38 39 74 1 0 134 chain 29659 chr13 114364328 + 108669704 108670089 L1PA8 5853 + 5475 5853 42422 87 1 0 48 2 0 68 2 1 14 1 0 43 6 5 19 1 0 93 chain 23629 chr13 114364328 + 108781660 108781973 THE1A 353 + 0 310 51382 51 3 1 59 1 0 199 chain 129958 chr13 114364328 + 108782016 108783584 THE1A-int 1579 + 0 1574 14045 440 0 2 512 3 6 216 1 2 396 chain 23613 chr13 114364328 + 108783596 108783908 THE1A 353 + 7 323 51408 103 1 0 92 10 15 106 chain 83669 chr13 114364328 + 108829848 108830765 L1PA3long 6157 + 5235 6152 20879 917 chain 91555 chr13 114364328 + 108880951 108882086 L1P2 5180 + 623 1782 19404 164 1 0 6 2 1 121 0 1 6 0 25 835 chain 90630 chr13 114364328 + 108900413 108901473 MER11C 1089 + 0 1073 19566 252 0 7 175 5 10 142 12 13 474 chain 27722 chr13 114364328 + 108913680 108914044 MER57A1 433 + 0 368 45288 196 2 5 67 9 10 90 chain 4337 chr13 114364328 + 109056000 109056050 MER58A 224 + 27 77 89254 50 chain 58145 chr13 114364328 + 109059924 109060650 L1PA8 5853 + 5127 5853 26923 25 0 5 274 0 1 88 0 1 45 1 0 42 2 0 70 2 1 14 1 0 47 2 1 19 1 0 93 chain 3443 chr13 114364328 + 109142669 109142734 MER51A 677 + 176 231 95713 24 12 1 4 0 1 25 chain 57920 chr13 114364328 + 109202540 109203329 L1PB1 5432 + 3801 4599 26991 190 0 3 91 15 19 4 0 1 110 0 1 262 33 30 5 0 3 79 chain 27399 chr13 114364328 + 109265089 109265511 LTR7Y 441 + 0 431 45707 96 18 9 55 68 84 79 0 1 91 0 1 15 chain 288067 chr13 114364328 + 109265521 109269447 HERVH-int 3825 + 0 3727 7195 532 127 0 10 64 0 28 1 0 10 1 0 24 70 0 15 1 0 12 3 0 10 28 11 4 1 0 42 2 1 52 0 1 11 0 2 13 0 3 660 0 1 241 10 33 176 1 0 123 0 10 948 165 0 43 1 0 54 9 11 39 8 218 260 0 2 127 chain 5565 chr13 114364328 + 109266053 109266114 HERVH-int 3825 + 471 532 79420 61 chain 2460 chr13 114364328 + 109266147 109266175 HERVH-int 3825 + 504 532 103859 28 chain 28926 chr13 114364328 + 109270683 109271116 LTR7Y 441 + 0 441 43440 96 18 9 55 68 84 171 0 1 25 chain 127737 chr13 114364328 + 109310920 109312399 SVA_B 1603 + 44 1603 14320 158 1 0 468 0 3 130 39 0 13 0 40 65 4 0 20 0 81 581 chain 63362 chr13 114364328 + 109319616 109320492 L1PBa1 4058 + 1017 1892 25539 36 0 1 50 5 4 137 19 20 387 3 0 6 2 4 64 1 0 79 1 0 52 5 6 29 chain 192937 chr13 114364328 + 109320492 109323456 L1PB1 5432 + 2795 5392 9975 907 1 2 6 1 0 15 26 11 219 2 0 610 2 0 52 4 6 437 0 1 42 19 14 21 1 0 9 335 11 9 2 0 53 19 17 32 0 1 10 1 0 16 1 0 4 18 8 19 11 8 11 3 1 23 6 5 17 chain 26577 chr13 114364328 + 109342952 109344106 MLT2A1 477 + 94 477 46864 75 9 6 35 13 0 68 1 0 106 4 0 30 741 0 10 9 0 53 chain 13650 chr13 114364328 + 109346544 109346723 L1PB1 5432 + 4877 5054 64089 80 0 1 4 3 0 92 chain 2545 chr13 114364328 + 109346735 109346766 L1PB1 5432 + 5067 5098 103403 31 chain 16908 chr13 114364328 + 109346854 109347195 L1PB1 5432 + 5114 5423 59904 20 1 0 11 1 0 12 17 11 52 2 1 15 1 0 39 6 5 16 2 0 6 16 6 18 3 1 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 10 1 0 9 chain 23236 chr13 114364328 + 109379382 109379749 L1PA8 5853 + 5529 5852 52027 35 1 0 45 2 0 67 4 3 21 1 0 40 2 1 19 1 0 61 42 5 26 chain 26847 chr13 114364328 + 109398741 109399056 L1PA7 6471 + 6106 6435 46477 203 0 14 112 chain 51576 chr13 114364328 + 109434943 109435574 L1PA7 6471 + 5536 6169 29003 88 2 0 62 1 2 135 5 8 338 chain 19156 chr13 114364328 + 109458726 109459000 L1PA8A 6298 + 6009 6291 57394 62 5 13 99 22 22 86 chain 15253 chr13 114364328 + 109563751 109563967 MER30 238 + 1 236 61976 64 0 1 41 8 0 7 3 26 21 0 3 72 chain 22460 chr13 114364328 + 109594031 109594309 L1PA6 6164 + 5875 6156 53181 28 0 3 250 chain 13717 chr13 114364328 + 109660525 109660801 L1PB1 5432 + 5167 5420 63994 53 24 22 35 6 5 14 3 0 15 9 0 16 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 85873 chr13 114364328 + 109832019 109833106 L1PA8A 6298 + 5196 6291 20471 182 5 0 111 1 6 405 1 6 186 0 1 42 1 3 44 10 10 99 chain 30089 chr13 114364328 + 109854661 109855171 L1PB1 5432 + 4914 5391 41965 86 1 0 102 14 12 24 1 0 8 1 0 10 6 2 9 2 0 53 2 1 15 1 0 44 1 0 12 18 5 22 20 17 10 2 0 24 1 0 21 chain 54711 chr13 114364328 + 109887466 109888543 L1PA15 4387 + 2777 3544 27969 116 57 59 49 317 5 160 4 3 354 0 1 20 chain 5326 chr13 114364328 + 109921872 109921962 MADE1 96 + 0 96 84069 47 0 6 43 chain 287071 chr13 114364328 + 109948272 109951997 HERVL-int 5654 + 1692 5644 7227 45 0 4 39 12 14 924 11 10 275 0 330 747 1 2 297 0 1 292 0 1 208 82 8 114 0 3 6 4 0 25 0 8 171 0 2 7 60 4 12 0 10 154 1 0 29 0 1 209 chain 32454 chr13 114364328 + 109952007 109952554 MLT2A1 477 + 0 477 39987 141 4 5 23 1 5 11 0 1 109 7 8 20 1 0 61 92 20 7 4 0 66 chain 23494 chr13 114364328 + 109964736 109965049 THE1B 368 + 0 325 51596 44 0 15 106 8 7 23 1 0 99 1 0 31 chain 23772 chr13 114364328 + 109993253 109993625 THE1C 375 + 0 364 51162 109 14 11 80 36 31 47 0 1 71 1 0 14 chain 185737 chr13 114364328 + 109995416 109997990 Charlie3 2679 + 18 2674 10313 15 1 0 22 24 64 28 1 2 17 5 17 11 12 0 78 4 0 137 7 17 29 5 8 385 1 2 128 9 5 235 7 20 30 7 6 161 14 21 64 0 5 74 10 20 742 0 1 56 13 14 83 0 1 87 2 0 6 11 12 53 chain 7542 chr13 114364328 + 110028126 110028279 Tigger5 388 + 205 355 76023 30 1 0 26 41 39 55 chain 212798 chr13 114364328 + 110039793 110042168 L1PA5 6144 + 3764 6142 9237 154 2 1 1436 0 4 783 chain 320928 chr13 114364328 + 110048793 110052755 L1PA5 6144 + 2495 6134 6389 656 8 7 351 1 0 424 0 1 727 1 0 99 10 0 267 310 0 858 1 0 249 chain 29984 chr13 114364328 + 110052755 110053133 L1PA7 6471 + 6086 6465 42072 17 0 6 204 5 6 88 1 0 51 5 0 7 chain 130053 chr13 114364328 + 110078328 110079991 L1P2 5180 + 1080 2843 14033 9 5 0 6 0 111 173 0 1 444 1 0 6 0 1 68 1 0 137 6 5 166 0 4 108 13 0 71 0 4 449 chain 11940 chr13 114364328 + 110087105 110087288 L1MA4 2864 + 2499 2693 66936 129 32 43 22 chain 54268 chr13 114364328 + 110111948 110112543 L1PA3long 6157 + 5562 6157 28129 595 chain 28894 chr13 114364328 + 110160160 110160466 AluYb8 318 + 0 305 43492 206 1 0 99 chain 3590 chr13 114364328 + 110260641 110260760 L1MB3 1562 + 1433 1549 94510 5 2 0 30 1 0 10 48 48 23 chain 7887 chr13 114364328 + 110451760 110451853 MER30 238 + 145 238 75157 93 chain 27017 chr13 114364328 + 110544810 110545152 THE1A 353 + 0 339 46243 109 3 1 72 1 0 157 chain 4743 chr13 114364328 + 110557251 110557324 MLT1D-int 1367 + 360 438 86998 52 6 11 15 chain 5190 chr13 114364328 + 110568873 110568937 MLT1B 390 + 278 342 84726 64 chain 6721 chr13 114364328 + 110583559 110583643 MSTB 430 + 0 89 78567 17 0 5 67 chain 16021 chr13 114364328 + 110598640 110598845 MER30 238 + 0 238 61002 105 0 33 100 chain 32487 chr13 114364328 + 110602236 110602999 MER4A1 472 + 0 472 39953 15 0 2 7 14 14 137 315 0 51 1 22 70 0 1 153 chain 4607 chr13 114364328 + 110610132 110610237 MER4D0 881 + 39 130 87758 21 1 0 10 17 5 31 6 5 19 chain 28481 chr13 114364328 + 110611033 110611489 MER41G 495 + 7 466 44155 120 5 6 21 51 48 12 1 2 76 4 8 166 chain 28519 chr13 114364328 + 110613527 110613902 LTR12F 595 + 7 458 44090 96 0 1 39 3 1 26 0 90 124 2 1 6 12 0 67 chain 527574 chr13 114364328 + 110669595 110675649 L1PA5 6144 + 1 6076 1932 134 10 24 242 0 1 224 0 2 124 12 13 130 0 1 112 2 1 160 9 0 2450 0 4 293 1 0 428 0 4 300 9 3 200 0 1 17 0 1 85 1 0 9 0 8 499 1 2 521 0 1 81 chain 18749 chr13 114364328 + 110709556 110709797 MLT2A1 477 + 219 477 57846 162 0 4 15 3 0 15 4 20 42 chain 24444 chr13 114364328 + 110788307 110788607 AluY 311 + 3 291 50104 129 0 1 151 13 0 7 chain 128584 chr13 114364328 + 110820975 110822522 LTR12C 1709 + 0 1709 14210 104 5 4 645 0 161 161 0 2 34 1 0 5 3 1 78 10 9 20 1 5 480 chain 36926 chr13 114364328 + 110824380 110824870 MER75 514 + 20 514 36792 67 5 8 323 1 5 75 3 0 16 chain 26450 chr13 114364328 + 110857196 110857542 THE1B 368 + 0 357 47055 44 0 15 115 1 0 22 2 0 97 1 0 64 chain 43808 chr13 114364328 + 110917361 110917917 MER41A 554 + 0 554 32246 35 7 8 118 0 1 355 11 7 30 chain 41164 chr13 114364328 + 110925168 110925699 MER41A 554 + 13 554 33866 455 8 13 42 6 11 20 chain 33736 chr13 114364328 + 110926280 110926718 MLT2A2 560 + 14 560 38891 166 1 0 121 3 112 147 chain 39278 chr13 114364328 + 110958166 110958692 MER41A 554 + 0 533 35163 86 9 10 53 0 1 314 15 20 49 chain 39525 chr13 114364328 + 110965259 110965842 LTR10F 562 + 0 562 34999 134 44 10 29 17 0 44 0 14 17 1 17 297 chain 129345 chr13 114364328 + 110968069 110970558 HERVIP10F-int 4088 + 218 2643 14108 13 27 18 5 1 0 12 3 0 7 3 1 13 1 0 19 1 0 8 171 114 7 1 0 10 1 0 10 4 3 16 90 78 16 1 0 12 1 2 19 1 0 8 1 0 4 7 5 10 1 0 13 1 0 17 1 0 15 1 0 7 1 0 23 35 32 26 1 0 4 4 2 5 0 2 26 1 0 7 1 0 59 1 0 5 1 0 26 1 0 11 1 0 20 1 0 8 1 0 5 12 10 20 1 0 5 4 1 8 1 0 29 1 0 41 2 0 11 1 0 8 1 0 13 21 16 20 11 8 23 1 0 14 1 0 41 1 0 100 37 100 23 1 0 30 8 7 56 7 5 81 1 0 26 31 27 233 1 20 148 6 5 15 1 0 35 1 4 26 1 0 82 2 1 74 7 6 10 2 1 134 1 0 185 chain 298965 chr13 114364328 + 110994246 110998278 L1PA10 4194 + 179 4161 6864 9 8 0 11 3 0 6 26 18 9 2 0 10 4 3 5 1 0 22 2 0 14 1 0 7 37 13 8 1 0 21 8 6 10 27 20 6 2 0 6 0 1 6 6 0 5 0 1 7 1 0 85 3 0 148 0 1 445 14 0 20 0 17 134 0 1 218 1 2 289 1 0 122 0 5 243 16 17 172 1 12 295 0 1 119 0 1 896 0 2 434 2 0 24 0 1 4 1 0 5 4 1 33 1 0 11 chain 61927 chr13 114364328 + 111056223 111056983 LTR17 781 + 0 781 25880 125 2 1 139 0 1 61 2 1 382 6 28 43 chain 46149 chr13 114364328 + 111064096 111064695 MER4B 649 + 0 619 30985 58 4 0 135 0 23 381 0 1 21 chain 9248 chr13 114364328 + 111108473 111108595 L1MA4 2864 + 2235 2354 72026 98 4 1 20 chain 89238 chr13 114364328 + 111136253 111137247 L1PA5 6144 + 2639 3634 19816 964 0 1 30 chain 5784 chr13 114364328 + 111221085 111221170 MLT2A1 477 + 336 413 81995 48 4 0 21 4 0 8 chain 29812 chr13 114364328 + 111358568 111358913 L1PA3long 6157 + 5813 6157 42222 324 1 0 20 chain 21543 chr13 114364328 + 111395264 111395622 THE1B 368 + 0 368 54445 47 22 23 88 3 0 14 2 1 26 38 51 118 chain 26126 chr13 114364328 + 111989626 111989966 THE1D 372 + 0 364 47524 60 0 15 44 0 6 56 9 12 171 chain 27109 chr13 114364328 + 112086160 112086446 AluYa5 310 + 12 298 46116 286 chain 6053 chr13 114364328 + 112186680 112186790 MLT1A1 405 + 283 394 80889 41 25 26 44 chain 118995 chr13 114364328 + 112221534 112222923 LTR12C 1709 + 0 1709 15703 78 1 2 712 1 319 6 2 0 107 0 4 43 1 0 438 chain 4062 chr13 114364328 + 112239257 112239416 LTR12C 1709 + 1118 1195 91008 41 99 17 19 chain 4438 chr13 114364328 + 112239444 112239543 LTR12C 1709 + 660 718 88676 17 41 0 41 chain 314254 chr13 114364328 + 112406825 112410364 L1PA5 6144 + 2588 6132 6523 1041 1 0 244 0 1 596 1 6 1656 chain 50602 chr13 114364328 + 112548746 112549313 L1PA5 6144 + 5394 5962 29347 25 0 1 542 chain 14819 chr13 114364328 + 112549319 112549493 L1PA5 6144 + 5969 6143 62502 174 chain 35527 chr13 114364328 + 112577979 112578877 LTR14B 630 + 0 630 37699 21 0 2 26 0 1 71 0 2 87 1 18 7 0 1 53 0 7 11 338 17 23 50 71 97 1 0 25 11 14 76 chain 29649 chr13 114364328 + 112578277 112578586 AluYk12 309 + 0 309 42435 309 chain 71357 chr13 114364328 + 112707443 112708390 HSMAR1 1287 + 330 1287 23680 135 21 22 209 0 3 71 0 1 51 1 0 137 5 6 64 0 3 23 1 2 71 0 1 158 chain 53937 chr13 114364328 + 112709143 112709880 MER4E 760 + 2 759 28251 22 9 6 121 22 25 186 2 4 80 1 0 7 3 4 75 1 0 58 0 5 36 2 3 46 1 14 65 chain 5984 chr13 114364328 + 112781713 112781784 MER41A 554 + 398 469 81149 71 chain 3124 chr13 114364328 + 112935011 112935068 MLT1C 463 + 7 63 98588 17 10 9 30 chain 5465 chr13 114364328 + 112935103 112935260 MER47A 366 + 0 159 83381 7 0 1 4 29 0 3 1 0 14 35 66 64 chain 77536 chr13 114364328 + 112941632 112942611 LTR13 1007 + 0 1007 22190 73 2 0 55 0 3 250 4 5 63 1 0 40 0 7 73 0 12 113 1 9 112 0 1 145 0 2 6 2 0 6 2 1 31 chain 7174 chr13 114364328 + 113154795 113154983 MSTD 398 + 0 209 77031 22 10 11 19 0 1 34 48 75 11 11 3 33 chain 7480 chr13 114364328 + 113377014 113377497 MER4D1 891 + 414 587 76175 16 47 48 69 310 1 21 2 0 18 chain 24504 chr13 114364328 + 113380665 113381450 MER41A 554 + 1 427 50015 52 0 3 30 9 10 56 0 14 26 384 29 11 28 6 84 1 3 57 4 0 15 1 3 27 chain 80646 chr13 114364328 + 113387904 113390756 MER41-int 2638 + 113 2638 21502 47 405 684 62 4 0 33 6 4 65 0 1 30 1305 699 140 2 0 33 2 0 15 0 4 113 24 25 157 9 11 128 0 2 272 chain 40108 chr13 114364328 + 113390773 113391298 MER41A 554 + 10 543 34587 76 9 10 92 1 2 135 0 1 71 1 3 7 0 1 22 0 1 24 0 1 87 chain 82192 chr13 114364328 + 113621366 113622349 LTR13 1007 + 0 1007 21203 263 0 2 116 4 5 40 0 20 343 19 20 198 chain 10519 chr13 114364328 + 113852114 113852288 MER30 238 + 34 231 69382 59 21 40 18 1 7 9 2 0 64 chain 61893 chr13 114364328 + 113867056 113867719 SVA_D 2077 + 1414 2077 25890 663 chain 41393 chr13 114364328 + 113925817 113926330 MER9a3 513 + 0 513 33739 274 2 1 28 7 10 98 0 1 4 0 1 29 4 0 67 chain 2748 chr13 114364328 + 113960895 113960932 MER101-int 1169 + 192 228 101989 13 1 0 23 chain 28102 chr13 114364328 + 114003470 114004041 LTR10E 629 + 0 609 44716 18 1 0 139 70 67 45 19 68 36 9 8 74 57 56 23 1 0 34 2 0 34 2 0 7 chain 11187 chr13 114364328 + 114094238 114094419 L1MB5 1630 + 1084 1264 68267 67 25 26 29 2 0 58 chain 27163 chr13 114364328 + 114172731 114173084 THE1A 353 + 0 353 46021 11 1 2 96 2 1 88 1 0 64 0 1 90 chain 8410 chr13 114364328 + 114206522 114206637 L1MB8 1703 + 1453 1584 73875 27 0 3 62 0 13 26 chain 184228 chr13 114364328 + 114217138 114219179 L1PA5 6144 + 3240 5285 10372 246 0 4 1795 chain 17368 chr13 114364328 + 114335441 114335747 L1PA14 3548 + 3145 3466 59397 20 4 6 20 1 30 111 1 0 10 5 1 36 4 2 12 7 5 19 1 0 39 5 0 3 1 0 7 chain 84828 chr14 107043718 + 16032519 16033531 LTR5A 1029 + 3 1029 20654 109 1 4 31 0 11 369 1 0 12 0 1 489 chain 70066 chr14 107043718 + 18273470 18274258 L1PA3long 6157 + 5362 6150 23980 788 chain 87571 chr14 107043718 + 18319452 18320475 LTR5B 1012 + 0 1012 20125 34 0 1 115 14 0 510 1 3 349 chain 355347 chr14 107043718 + 18349749 18353731 L1PA3long 6157 + 2165 6157 5851 1127 0 1 1167 0 3 431 1 0 416 0 4 70 0 1 629 0 1 118 0 1 23 chain 157298 chr14 107043718 + 18354499 18357385 HERVIP10F-int 4088 + 239 2964 11927 12 4 0 15 3 0 7 3 1 13 1 0 19 1 0 8 278 206 17 1 0 31 1 0 33 13 10 17 1 0 10 3 2 12 1 0 21 1 0 7 1 0 27 3 1 8 2 1 38 15 12 33 8 6 60 1 0 5 1 0 26 1 0 11 1 0 20 1 0 8 1 0 5 19 10 21 1 0 4 4 1 8 1 0 29 1 0 41 2 0 11 1 0 21 1 0 5 15 11 24 8 5 22 1 0 14 1 0 17 7 6 18 1 0 99 1 0 38 4 0 13 1 0 4 12 5 21 27 24 20 1 0 28 1 0 60 35 32 25 3 0 27 11 10 28 34 30 330 11 10 52 1 0 20 1 0 65 2 1 82 1 0 77 2 1 12 2 1 135 1 0 4 0 1 36 0 1 8 1 0 86 1 2 151 0 11 205 chain 23569 chr14 107043718 + 18370357 18370728 L1PA8 5853 + 5489 5853 51478 75 5 4 39 3 1 72 1 0 14 12 11 34 3 2 11 10 9 92 chain 225363 chr14 107043718 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107043718 + 18893568 18893721 L1PA4 6152 + 5996 6149 63442 153 chain 254209 chr14 107043718 + 18895899 18898731 L1PA4 6152 + 3322 6152 8129 1979 1 0 595 1 0 256 chain 26169 chr14 107043718 + 18901845 18902126 AluYa5 310 + 29 309 47475 103 1 0 177 chain 3729 chr14 107043718 + 19033337 19033376 HY3 101 + 61 100 93410 39 chain 86492 chr14 107043718 + 19060703 19061686 L1P1 4361 + 2510 3493 20327 148 1 2 517 1 0 316 chain 100985 chr14 107043718 + 19079651 19080829 L1PA4 6152 + 4959 6143 18187 141 1 0 178 0 4 534 3 4 157 2 3 52 6 7 104 chain 11731 chr14 107043718 + 19092953 19093120 PABL_B 668 + 286 461 67351 62 2 1 25 9 15 48 0 3 21 chain 3911 chr14 107043718 + 19105174 19105223 MER41B 635 + 485 534 92046 49 chain 78422 chr14 107043718 + 19129411 19130441 LTR5A 1029 + 0 1029 21996 74 0 6 47 15 1 22 7 20 59 5 0 92 2 0 450 6 5 43 1 2 166 8 9 33 chain 258550 chr14 107043718 + 19188567 19191417 L1PA3long 6157 + 3304 6157 8010 383 1 2 274 0 2 2192 chain 20870 chr14 107043718 + 19330067 19330330 L1PA8A 6298 + 5877 6140 55291 263 chain 24335 chr14 107043718 + 19349682 19350238 LTR4 552 + 42 552 50271 22 39 49 44 0 3 21 1 0 13 9 8 114 0 3 5 78 4 47 61 76 13 1 0 88 chain 4108 chr14 107043718 + 19352653 19352701 MER3 215 + 64 112 90711 48 chain 8477 chr14 107043718 + 19364974 19365458 L1MB8 1703 + 1188 1625 73731 79 241 257 39 106 43 19 chain 28415 chr14 107043718 + 19369208 19369800 L1MA1 4479 + 3565 4151 44240 16 9 4 129 10 5 20 2 0 16 1 0 9 2 0 5 10 29 28 95 91 30 1 0 5 3 0 59 0 1 62 5 4 28 3 1 10 0 1 20 1 0 13 chain 29336 chr14 107043718 + 19382732 19383156 L1PA7 6471 + 2283 2711 42827 109 0 2 43 0 1 5 20 19 176 1 2 42 5 6 23 chain 80924 chr14 107043718 + 19396093 19397180 L1PA7 6471 + 5369 6469 21452 249 1 3 48 0 1 261 0 1 156 19 25 103 0 9 83 3 5 83 9 4 59 3 0 10 chain 24878 chr14 107043718 + 19478772 19479084 AluSp 311 + 6 305 49477 288 13 0 11 chain 55317 chr14 107043718 + 19665067 19665754 L1PA6 6164 + 5474 6162 27771 529 15 16 143 chain 49848 chr14 107043718 + 19668205 19670649 L1PA6 6164 + 5538 6161 29619 250 1821 0 182 0 2 31 10 11 136 3 0 11 chain 9495 chr14 107043718 + 19674963 19675078 L1PA7 6471 + 6349 6464 71486 115 chain 58080 chr14 107043718 + 19693694 19694445 L1PA8A 6298 + 5504 6290 26939 43 1 9 113 2 0 193 0 25 30 1 2 87 2 1 103 0 3 70 7 8 99 chain 214922 chr14 107043718 + 19705640 19708159 L1P1 4361 + 756 3278 9178 307 8 9 115 3 0 5 13 16 315 1 3 1752 chain 65445 chr14 107043718 + 19721718 19722421 L1HS 6032 + 3637 4340 25083 703 chain 16176 chr14 107043718 + 19775222 19775485 MER72 723 + 453 723 60781 74 2 0 5 0 2 20 33 39 70 0 2 16 1 0 42 chain 15201 chr14 107043718 + 19838153 19838401 L1PA13 3608 + 3250 3488 62042 24 2 0 60 1 0 54 1 0 6 1 0 4 3 2 21 1 2 17 12 8 18 1 0 22 chain 125034 chr14 107043718 + 19865713 19867282 SVA_B 1603 + 0 1597 14695 24 1 25 402 119 0 293 0 40 124 0 82 203 7 8 396 chain 2645 chr14 107043718 + 19866219 19866259 SVA_B 1603 + 527 567 59876 40 chain 250801 chr14 107043718 + 19911479 19914333 L1P1 4361 + 995 4325 8210 379 0 1 815 0 472 1432 1 0 54 1 0 55 0 6 96 1 0 20 chain 18716 chr14 107043718 + 19924542 19924771 L1PA8A 6298 + 5677 5906 57881 229 chain 86946 chr14 107043718 + 19954634 19955687 MER11C 1089 + 0 1063 20239 250 0 1 63 2 6 368 0 4 45 0 1 127 0 1 181 1 0 16 chain 142437 chr14 107043718 + 19962749 19964322 L1PA3long 6157 + 4583 6157 12896 1426 0 1 147 chain 22663 chr14 107043718 + 19967816 19968095 AluSp 311 + 6 284 52877 267 1 0 11 chain 44337 chr14 107043718 + 19978748 19979559 HERVIP10F-int 4088 + 2465 3315 31926 220 0 28 269 27 24 51 104 139 7 1 0 17 9 5 17 25 21 12 2 1 8 3 0 5 21 13 13 chain 37397 chr14 107043718 + 19994565 19995031 MER4A1 472 + 0 472 36477 385 2 8 64 1 0 4 0 1 10 chain 7361 chr14 107043718 + 20015228 20015388 L1MA8 2339 + 1955 2119 76502 23 13 21 10 1 0 51 1 0 21 24 22 16 chain 3201 chr14 107043718 + 20033686 20033757 MADE1 96 - 24 94 97883 14 21 20 36 chain 50612 chr14 107043718 + 20041946 20042513 L1PA3long 6157 + 5589 6157 29344 234 0 1 333 chain 33569 chr14 107043718 + 20079319 20079684 L1PA3long 6157 + 5791 6157 39029 272 0 1 93 chain 80508 chr14 107043718 + 20084586 20085556 LTR5_Hs 974 + 0 974 21530 820 7 14 9 1 0 28 2 0 103 chain 7185 chr14 107043718 + 20085558 20085782 L1MA8 2339 + 1995 2189 76990 13 2 1 68 112 83 29 chain 3867 chr14 107043718 + 20090166 20090209 5S 121 + 47 90 92372 43 chain 3004 chr14 107043718 + 20092227 20092261 HSMAR1 1287 + 1252 1286 99806 34 chain 87797 chr14 107043718 + 20099012 20100223 LTR12E 1234 + 0 1234 20084 178 21 9 99 0 1 169 3 0 5 43 46 91 2 3 233 11 13 193 0 4 27 0 1 37 13 39 86 chain 551595 chr14 107043718 + 20103657 20109808 L1PA3long 6157 + 6 6157 633 1440 1 0 741 1 0 988 6 7 2436 0 1 538 chain 49763 chr14 107043718 + 20132904 20133545 L1PA8 5853 + 5215 5853 29652 252 0 3 45 0 1 48 1 0 44 6 4 66 2 1 15 8 7 39 2 1 19 1 0 93 chain 193015 chr14 107043718 + 20151588 20153717 L1PA3long 6157 + 4028 6157 9973 2129 chain 5564 chr14 107043718 + 20156021 20156333 L1PREC2 3366 + 2971 3214 82969 31 10 8 41 3 1 11 130 78 14 54 41 18 chain 32737 chr14 107043718 + 20174536 20174892 L1PA4 6152 + 5362 5718 39726 356 chain 104008 chr14 107043718 + 20212056 20213449 SVA_D 2077 + 25 1740 17820 17 0 6 389 0 272 52 0 40 103 2 0 8 52 0 30 7 0 6 8 4 41 1 0 10 1 0 31 1 2 12 1 0 49 1 0 33 0 1 4 70 46 39 1 0 4 1 0 96 0 98 31 1 0 291 chain 3672 chr14 107043718 + 20212627 20212679 SVA_D 2077 + 997 1050 47525 37 1 2 6 0 1 5 1 0 2 chain 5520 chr14 107043718 + 20212915 20212985 SVA_D 2077 + 985 1054 38332 12 1 0 37 1 2 12 1 0 6 chain 129169 chr14 107043718 + 20264630 20266067 L1PA3long 6157 + 3278 4715 14123 868 0 1 4 1 0 564 chain 128856 chr14 107043718 + 20266068 20267500 L1PA3long 6157 + 4715 6152 14170 1256 0 1 33 0 4 143 chain 77835 chr14 107043718 + 20268922 20269890 LTR5_Hs 974 + 0 974 22136 288 0 1 315 1 2 143 12 11 59 8 15 31 8 6 103 chain 545573 chr14 107043718 + 20280047 20286192 L1PA4 6152 + 1 6152 995 119 0 1 333 1 0 580 1 0 210 1 0 1339 0 4 1102 1 0 658 0 4 1066 0 1 399 0 1 80 1 0 70 16 16 168 chain 168448 chr14 107043718 + 20309348 20311285 SVA_D 2077 + 40 2073 11192 647 0 40 181 2 0 8 3 1 26 55 64 27 2 4 314 0 49 672 chain 4185 chr14 107043718 + 20310215 20310268 SVA_D 2077 + 1130 1183 38092 53 chain 27944 chr14 107043718 + 20325140 20325435 AluYa5 310 + 1 296 44961 295 chain 3484 chr14 107043718 + 20335937 20335974 MSTC 436 + 387 424 95352 37 chain 7805 chr14 107043718 + 20414986 20415076 5S 121 + 0 90 75366 90 chain 60333 chr14 107043718 + 20426528 20427193 L1PA3long 6157 + 5493 6157 26280 405 1 0 259 chain 55927 chr14 107043718 + 20443192 20443816 SVA_B 1603 + 901 1603 27584 23 0 78 601 chain 99510 chr14 107043718 + 20505334 20506430 SVA_D 2077 + 55 1331 18351 823 0 183 32 2 0 127 1 0 111 chain 92126 chr14 107043718 + 20506456 20507618 SVA_E 1901 + 806 1890 19320 6 1 0 5 1 0 21 1 0 85 1 0 3 52 0 32 1 2 92 0 1 4 19 45 193 50 0 595 chain 1934 chr14 107043718 + 20506580 20506618 SVA_E 1901 + 973 1010 58435 1 1 0 36 chain 2543 chr14 107043718 + 20506973 20507023 SVA_E 1901 + 993 1042 43735 17 1 0 32 chain 24710 chr14 107043718 + 20567491 20567838 MLT2A1 477 + 94 477 49711 48 0 1 25 1 5 150 1 0 62 4 0 7 16 52 33 chain 429980 chr14 107043718 + 20567838 20573123 HERVL-int 5654 + 0 5654 4746 297 0 1 256 4 9 219 0 1 4 1 0 188 15 19 498 0 330 84 5 6 160 1 10 83 1 2 97 0 3 6 12 9 435 3 0 348 0 7 138 1 2 194 0 1 299 0 1 4 1 0 159 2 1 183 0 2 53 0 1 576 0 1 281 8 6 244 2 0 65 0 6 144 0 7 214 chain 27912 chr14 107043718 + 20573123 20573531 MLT2A1 477 + 0 470 45014 90 27 35 17 0 1 16 0 22 142 1 0 62 4 0 12 2 38 35 chain 7939 chr14 107043718 + 20610131 20610213 tRNA-Leu-CTY 82 + 0 82 75029 82 chain 6158 chr14 107043718 + 20625370 20625449 tRNA-Leu-CTA_ 78 + 0 78 80509 49 2 1 28 chain 6734 chr14 107043718 + 20633005 20633077 tRNA-Pro-CCA 73 + 0 72 78528 72 chain 136014 chr14 107043718 + 20634500 20636423 L1PB2 3958 + 1931 3838 13431 64 1 0 150 0 7 16 5 0 177 13 12 27 14 16 81 4 0 265 1 0 14 3 1 95 22 19 49 1 0 37 1 2 123 0 13 118 0 4 56 0 1 31 2 0 11 14 12 29 1 0 16 5 0 61 3 1 12 2 0 89 1 0 43 2 1 10 1 0 23 1 0 64 2 1 68 2 0 12 4 0 12 6 5 59 chain 45829 chr14 107043718 + 20642728 20643304 LTR19B 566 + 0 566 31144 284 8 17 24 0 1 172 21 0 14 0 1 53 chain 4399 chr14 107043718 + 20650244 20650292 Tigger3b 1229 + 54 102 88895 48 chain 8823 chr14 107043718 + 20679410 20679509 HY3 101 + 0 99 72939 99 chain 3138 chr14 107043718 + 20681695 20681728 tRNA-Thr-ACA 39 + 6 39 98487 33 chain 3556 chr14 107043718 + 20683272 20683309 tRNA-Tyr-TAC 38 + 0 37 94794 37 chain 6948 chr14 107043718 + 20684015 20684087 tRNA-Pro-CCA 73 + 0 72 77784 72 chain 52680 chr14 107043718 + 20766868 20767605 MER4E1 777 + 0 765 28672 155 14 19 4 1 0 124 5 6 21 0 19 68 0 2 8 7 8 52 5 9 45 14 10 93 0 1 121 chain 12490 chr14 107043718 + 20797123 20797288 Tigger3b 1229 + 931 1106 66001 57 2 12 106 chain 39660 chr14 107043718 + 20799348 20799847 HERV1_LTRd 520 + 0 511 34918 26 0 1 24 1 13 277 1 0 15 2 4 58 1 0 50 1 0 43 chain 4137 chr14 107043718 + 20851612 20851660 L1MC4 1079 + 708 756 90525 48 chain 534763 chr14 107043718 + 20860123 20866261 L1PA5 6144 + 0 6135 1631 151 28 33 145 1 0 833 16 7 633 0 1 37 0 5 409 9 1 58 4 2 462 0 2 427 0 1 63 1 0 235 1 2 175 1 0 237 0 1 427 0 4 943 1 0 841 chain 4099 chr14 107043718 + 20888309 20888354 MADE1 96 + 50 95 90782 45 chain 3671 chr14 107043718 + 20910118 20910163 MADE1 96 + 51 96 93806 45 chain 551226 chr14 107043718 + 20910598 20916733 L1PA3long 6157 + 15 6153 660 350 2 0 2780 0 2 120 4 6 2660 0 1 219 chain 3854 chr14 107043718 + 20952410 20952456 MADE1 96 + 50 96 92470 46 chain 3293 chr14 107043718 + 20963044 20963080 L1MA2 4263 + 4069 4105 97072 36 chain 48330 chr14 107043718 + 21003057 21003917 PABL_A 660 + 0 660 30170 40 221 21 24 8 5 10 0 2 59 5 2 202 1 5 290 chain 121629 chr14 107043718 + 21006729 21009213 PABL_A-int 1935 + 99 1922 15237 6 2 0 28 8 6 94 2 1 21 0 1 74 1 2 7 1 0 72 0 2 25 0 1 18 15 14 414 0 1 23 761 115 49 0 1 190 1 6 51 1 0 115 0 2 4 1 0 285 1 0 101 13 12 14 2 0 16 6 1 22 11 5 14 5 0 10 chain 54840 chr14 107043718 + 21009671 21010322 PABL_A 660 + 0 660 27930 81 0 9 570 chain 16921 chr14 107043718 + 21137541 21137749 Tigger3c 601 + 345 553 59884 208 chain 26274 chr14 107043718 + 21146869 21147198 L1PA7 6471 + 6139 6468 47312 166 8 0 7 1 9 147 chain 24075 chr14 107043718 + 21153716 21154003 AluSp 311 + 6 293 50692 287 chain 188902 chr14 107043718 + 21172017 21175256 L1PREC2 3366 + 140 2951 10169 30 1 0 10 3 1 19 7 2 7 1 0 24 4 3 10 1 0 11 4 1 10 0 2 15 2 1 114 1 0 67 4 1 16 375 5 419 2 0 41 2 8 17 4 0 8 7 10 9 0 3 92 13 14 144 2 0 17 42 39 31 1 2 21 18 20 309 4 7 209 31 19 395 0 2 158 2 0 98 0 1 170 7 5 22 11 0 6 12 0 18 7 6 13 1 0 28 1 0 4 37 34 17 6 1 14 8 6 25 chain 109829 chr14 107043718 + 21188258 21189482 SVA_D 2077 + 76 2074 17093 267 4 1 219 1 42 160 0 741 556 5 0 12 chain 3534 chr14 107043718 + 21589508 21589546 LTR10A 586 + 226 264 94993 38 chain 6700 chr14 107043718 + 21594341 21594426 L1MA4 2864 + 81 168 78636 75 0 2 10 chain 26820 chr14 107043718 + 21675278 21675708 MER57A1 433 + 0 433 46512 36 5 13 169 14 12 42 52 50 19 1 0 92 chain 185210 chr14 107043718 + 21679581 21682192 MER57-int 2662 + 101 2662 10327 7 0 1 15 1 2 56 0 7 51 3 7 68 2 0 98 33 6 393 9 7 550 0 2 28 1 0 135 1 0 142 5 6 188 0 1 32 5 6 381 7 8 34 2 0 8 1 0 80 4 3 11 10 5 61 23 11 9 0 1 11 32 27 22 1 0 8 18 13 23 3 0 31 2 0 6 chain 16487 chr14 107043718 + 21690008 21690241 L1P3 4156 + 42 285 60399 125 4 7 68 13 20 23 chain 113210 chr14 107043718 + 21697293 21698592 SVA_B 1603 + 0 1603 16648 19 0 25 390 0 116 196 0 40 38 0 124 28 1 0 34 1 0 18 0 1 574 chain 161401 chr14 107043718 + 21753779 21755926 L1P3 4156 + 2 2157 11653 219 2 3 27 1 0 56 3 0 12 1 0 75 6 7 360 5 6 11 6 5 64 0 1 138 0 1 17 0 1 65 0 1 204 17 16 36 36 37 75 0 4 429 0 2 264 0 1 18 chain 499218 chr14 107043718 + 21760083 21766285 L1PA6 6164 + 14 6162 3157 185 2 0 250 24 16 104 1 0 228 1 18 673 0 1 724 0 2 110 0 1 46 0 1 139 1 2 675 1 2 109 0 1 395 0 1 40 0 1 240 0 1 154 7 0 634 48 0 320 0 1 4 23 6 1064 chain 41889 chr14 107043718 + 21776807 21777342 MER41A 554 + 0 546 33427 87 5 6 20 0 10 133 3 4 262 1 0 24 chain 7174 chr14 107043718 + 21787657 21787753 L1PA15 4387 + 3088 3183 77034 79 1 0 16 chain 111589 chr14 107043718 + 21805705 21807028 L1PA7 6471 + 5126 6455 16866 296 0 1 5 1 0 191 3 2 286 0 6 400 1 2 140 chain 59900 chr14 107043718 + 21813971 21814649 L1PA4 6152 + 5470 6151 26404 214 0 2 308 0 1 156 chain 50898 chr14 107043718 + 21822893 21823920 L1PA8 5853 + 5141 5847 29241 246 6 8 171 1 0 34 342 23 42 0 1 15 1 0 13 2 0 5 6 7 34 2 1 19 1 0 87 chain 265331 chr14 107043718 + 21896593 21899484 L1PA2 6032 + 3139 6030 7817 2891 chain 82306 chr14 107043718 + 21903329 21904373 MER11C 1089 + 0 1063 21174 246 0 9 60 1 5 212 62 63 92 0 4 8 1 0 38 0 1 127 0 1 197 chain 4184 chr14 107043718 + 21919440 21919520 MADE1 96 + 0 96 90234 23 6 22 51 chain 289282 chr14 107043718 + 21968692 21972479 L1P2 5180 + 1386 5178 7152 821 0 2 108 8 5 356 0 9 528 2 0 155 16 15 66 0 13 233 0 1 6 1 0 553 1 0 7 0 1 237 21 17 75 13 14 92 0 1 4 6 5 180 7 0 130 0 7 5 7 0 57 1 0 47 1 0 38 1 0 4 chain 86941 chr14 107043718 + 22058938 22060155 Tigger1 2417 + 464 1703 20240 61 39 40 59 2 1 292 0 1 383 2 0 83 17 20 114 5 6 23 8 24 83 0 3 46 chain 6365 chr14 107043718 + 22074146 22074247 MLT1C 463 + 2 105 79792 18 16 18 67 chain 68674 chr14 107043718 + 22091143 22091957 L1PA5 6144 + 5280 6141 24293 7 0 3 4 0 1 50 0 5 129 1 37 290 8 9 240 0 1 85 chain 33190 chr14 107043718 + 22103090 22103520 L1PA7 6471 + 6038 6467 39363 88 9 10 322 2 0 9 chain 3648 chr14 107043718 + 22137307 22137353 L1MC2 1988 + 1942 1987 94035 4 1 0 41 chain 37462 chr14 107043718 + 22175036 22175511 LTR2B 499 + 9 499 36432 5 1 0 60 3 0 37 0 19 178 0 1 8 1 0 182 chain 23583 chr14 107043718 + 22197481 22197825 THE1B 368 + 0 356 51459 24 1 2 5 1 0 13 8 23 107 5 7 18 4 0 94 1 0 63 chain 23441 chr14 107043718 + 22199400 22199758 THE1B 368 + 2 368 51691 42 5 20 108 10 9 19 18 12 81 1 0 17 0 1 57 chain 46964 chr14 107043718 + 22234923 22235870 PRIMA4_LTR 623 + 0 623 30671 188 8 4 22 318 1 20 3 0 26 0 1 70 1 0 50 5 2 192 0 3 44 chain 45410 chr14 107043718 + 22236567 22237138 LTR17 781 + 218 781 31357 81 10 0 28 0 1 386 3 0 6 1 4 49 0 1 7 chain 374432 chr14 107043718 + 22238741 22243081 HERV17-int 4347 + 12 4347 5578 14 2 1 50 2 1 34 2 0 18 10 9 619 0 3 687 0 1 28 12 7 1627 0 1 1235 chain 63696 chr14 107043718 + 22243396 22244186 LTR17 781 + 0 781 25477 299 10 0 28 0 1 387 22 0 11 1 23 32 chain 4491 chr14 107043718 + 22276284 22276335 LTR16E1 515 + 420 471 88385 51 chain 26888 chr14 107043718 + 22283413 22283765 THE1A 353 + 0 349 46426 109 2 1 32 1 0 60 1 0 147 chain 45117 chr14 107043718 + 22330764 22331306 MER41A 554 + 0 547 31518 307 0 5 235 chain 515853 chr14 107043718 + 22348928 22354841 L1PA5 6144 + 0 5969 2476 793 5 6 124 0 1 468 0 6 292 0 1 432 0 5 51 0 38 760 10 0 50 0 1 742 0 1 118 4 1 906 0 2 443 0 1 51 2 0 211 0 20 432 6 0 13 chain 170694 chr14 107043718 + 22364801 22366853 L1PA7 6471 + 4397 6453 11070 55 0 8 18 0 1 540 19 1 142 6 11 180 0 1 260 0 3 81 0 2 46 7 9 342 0 1 217 7 6 132 chain 39797 chr14 107043718 + 22367117 22367582 L1PA7 6471 + 5800 6265 34825 465 chain 13239 chr14 107043718 + 22367598 22367756 L1PA7 6471 + 6282 6441 64720 41 0 1 117 chain 31718 chr14 107043718 + 22491221 22491574 L1PA2 6032 + 5678 6031 40562 353 chain 40521 chr14 107043718 + 22629186 22629810 MER50B 698 + 0 662 34296 13 0 4 27 5 6 76 40 46 15 26 52 239 2 4 53 1 0 127 chain 3650 chr14 107043718 + 22630559 22630604 MER89 557 + 0 45 94023 45 chain 95871 chr14 107043718 + 22636438 22637530 SVA_D 2077 + 62 1335 18786 146 4 1 444 0 1 63 1 2 159 0 183 32 1 0 242 chain 94584 chr14 107043718 + 22637552 22638668 SVA_E 1901 + 806 1901 18955 6 1 0 5 1 0 63 0 1 4 14 38 35 2 1 136 1 0 33 43 0 22 0 1 750 chain 3563 chr14 107043718 + 22637853 22637896 SVA_E 1901 + 953 1002 37888 13 7 13 23 chain 112189 chr14 107043718 + 22638795 22640005 SVA_F 1814 + 444 1814 16790 438 1 0 23 0 113 71 0 49 666 1 0 10 chain 340731 chr14 107043718 + 22679799 22683674 L1PA5 6144 + 1965 5870 6056 347 0 2 1134 0 1 95 1 14 125 1 3 1601 1 0 94 3 0 311 0 6 84 0 10 78 chain 7435 chr14 107043718 + 22683950 22684111 L1M1 2793 + 1140 1282 76289 30 10 9 15 0 1 34 13 5 16 4 0 19 4 0 6 3 0 7 chain 229311 chr14 107043718 + 22685730 22689250 L1P2 5180 + 3 3254 8766 142 6 5 14 130 137 17 185 12 17 37 10 13 3 0 21 16 18 39 42 23 33 0 1 5 19 20 12 100 23 171 26 5 42 0 15 129 0 4 8 0 19 7 1 2 4 1 0 474 4 5 47 0 2 23 0 1 51 1 0 1615 1 0 41 0 1 23 chain 9868 chr14 107043718 + 22729165 22729288 MER85 139 + 6 139 70687 83 0 10 40 chain 14622 chr14 107043718 + 22736513 22736751 MER84 505 + 143 413 62773 107 4 25 42 0 1 15 0 2 5 28 36 37 chain 21985 chr14 107043718 + 22737671 22737956 AluSc 308 + 8 293 53856 165 11 11 109 chain 89066 chr14 107043718 + 22757757 22758799 L1PA6 6164 + 5121 6162 19848 16 0 1 177 1 0 222 3 5 607 3 0 13 chain 3062 chr14 107043718 + 22761121 22761156 L1M4c 1769 + 254 289 99204 35 chain 16507 chr14 107043718 + 22793304 22793529 LTR8 732 + 39 273 60358 56 0 1 4 2 1 55 1 8 77 0 2 30 chain 45064 chr14 107043718 + 22804097 22804705 L1PA11 4918 + 3916 4504 31546 168 9 0 152 2 0 92 5 0 65 2 1 81 2 0 11 6 5 13 chain 4879 chr14 107043718 + 22867830 22867916 HY3 101 + 14 101 86264 10 0 14 6 14 0 41 0 1 15 chain 4702 chr14 107043718 + 22929700 22929749 tRNA-Arg-CGY_ 50 + 0 49 87260 49 chain 24413 chr14 107043718 + 22943532 22943838 AluSp 311 + 0 302 50147 10 3 0 146 0 1 91 2 0 54 chain 23099 chr14 107043718 + 23124292 23124626 LTR54 533 + 0 333 52213 13 8 7 39 0 1 117 1 4 69 8 4 79 chain 61578 chr14 107043718 + 23192016 23192696 L1PA5 6144 + 5464 6144 25965 680 chain 3517 chr14 107043718 + 23214167 23214206 L1MDa 1598 + 530 569 95118 39 chain 125829 chr14 107043718 + 23223654 23225748 L1MA2 4263 + 2333 4218 14581 205 0 1 14 4 2 50 6 7 30 1 0 117 22 17 128 4 0 7 7 0 331 3 2 321 30 26 71 1 0 16 3 6 10 45 0 5 9 0 86 24 21 152 9 7 82 2 0 7 9 4 47 204 83 16 4 2 12 chain 139495 chr14 107043718 + 23231647 23233421 SVA_C 1631 + 41 1629 13140 299 3 0 407 40 0 111 89 0 52 1 0 45 1 0 47 2 0 16 1 0 13 4 0 14 45 0 584 chain 3977 chr14 107043718 + 23232543 23232596 SVA_C 1631 + 851 905 62346 27 0 1 26 chain 2099 chr14 107043718 + 23232792 23232835 SVA_C 1631 + 953 1001 71762 19 12 17 12 chain 6935 chr14 107043718 + 23290926 23291022 L1PB1 5432 + 5332 5423 77828 14 2 0 24 1 0 23 1 0 11 1 0 19 chain 9798 chr14 107043718 + 23465448 23465623 MER39 703 + 5 212 70821 94 10 7 28 29 64 14 chain 5502 chr14 107043718 + 23581235 23581321 LTR12C 1709 + 939 1025 64903 86 chain 20590 chr14 107043718 + 23581332 23581984 LTR12C 1709 + 676 1513 55658 161 1 0 18 0 41 81 360 506 11 1 0 19 chain 8569 chr14 107043718 + 23609824 23609922 THE1-int 844 + 445 543 73523 98 chain 79475 chr14 107043718 + 23628219 23629718 HSMAR1 1287 + 0 1246 21747 84 331 0 32 11 9 264 9 12 52 1 16 10 0 4 65 12 3 7 0 9 49 44 96 61 0 3 128 30 33 309 chain 19117 chr14 107043718 + 23634713 23635065 MSTA 426 + 0 392 57432 71 1 0 37 16 40 51 0 47 12 61 11 27 1 21 75 chain 79093 chr14 107043718 + 23635626 23638396 LTR12D 1347 + 0 1347 21842 184 79 149 203 0 31 127 0 17 23 1617 0 165 5 0 86 0 97 127 5 2 10 32 18 4 0 1 103 chain 24763 chr14 107043718 + 23636300 23636649 LTR12D 1347 + 768 1347 49642 227 15 244 4 0 1 103 chain 11124 chr14 107043718 + 23637709 23637840 LTR12D 1347 + 567 698 68368 131 chain 28407 chr14 107043718 + 23659536 23659845 L1PA3long 6157 + 5834 6143 44258 309 chain 37228 chr14 107043718 + 23692551 23693076 LTR61 567 + 0 527 36599 25 0 1 15 2 5 9 0 11 47 15 0 275 32 34 105 chain 41483 chr14 107043718 + 23696248 23697149 HERV3-int 2824 + 1827 2695 33683 17 2 0 113 19 13 17 1 0 14 10 7 17 1 0 9 1 0 26 1 0 4 31 29 4 1 0 49 2 0 8 1 0 4 1 0 20 1 0 4 1 0 60 2 9 12 45 54 16 6 10 69 4 3 67 1 0 33 48 39 42 3 0 13 11 10 13 6 3 24 1 0 7 15 6 12 1 0 11 chain 38116 chr14 107043718 + 23698400 23698968 LTR61 567 + 0 567 35977 25 0 1 27 5 16 44 15 0 109 1 2 164 9 12 17 6 5 103 14 13 29 chain 56552 chr14 107043718 + 23703479 23704272 HSMAR1 1287 + 6 792 27407 71 8 0 47 4 1 339 16 17 69 0 9 7 9 1 40 0 1 128 1 0 9 0 2 45 chain 69559 chr14 107043718 + 23714023 23714814 L1PA4 6152 + 5361 6152 24105 613 16 17 4 1 0 157 chain 107307 chr14 107043718 + 23736305 23737562 SVA_B 1603 + 8 1603 17405 14 0 5 14 22 6 471 0 273 93 0 38 19 3 1 20 0 40 601 chain 38712 chr14 107043718 + 23745485 23745966 L1PA7 6471 + 5970 6464 35552 360 11 24 110 chain 12821 chr14 107043718 + 23791921 23792129 7SK 245 + 0 236 65411 72 41 69 95 chain 10054 chr14 107043718 + 23810196 23810335 Tigger1 2417 + 1317 1455 70296 55 2 0 57 1 2 24 chain 52208 chr14 107043718 + 23819354 23819955 L1PA5 6144 + 5512 6140 28817 298 0 1 30 1 27 272 chain 43358 chr14 107043718 + 23870705 23871223 L1PA7 6471 + 5946 6465 32535 362 4 5 152 chain 133329 chr14 107043718 + 23891573 23893122 LTR12C 1709 + 0 1709 13712 419 2 1 302 0 1 114 1 0 123 1 158 106 0 4 481 chain 217092 chr14 107043718 + 23919469 23921813 L1PA2 6032 + 3687 6032 9118 2192 0 1 152 chain 336011 chr14 107043718 + 23944945 23949611 L1PA7 6471 + 2116 6469 6129 213 10 7 13 1 0 173 322 0 87 24 25 139 2 0 87 8 9 24 5 6 179 1 0 4 5 6 396 9 8 175 0 9 333 1 0 208 15 16 184 9 5 250 1 2 112 0 1 805 7 11 20 0 6 71 0 2 349 0 1 246 12 10 150 5 0 11 chain 277393 chr14 107043718 + 23973540 23977113 L1PA6 6164 + 2288 6161 7508 45 0 1 252 13 16 575 22 19 44 5 9 451 1 0 80 1 317 153 0 1 99 12 16 436 4 6 25 28 0 270 7 7 51 6 6 148 0 3 165 0 1 665 3 0 12 chain 8814 chr14 107043718 + 23977552 23978118 LTR24B 570 + 0 570 72968 43 1 0 17 1 5 18 414 414 55 0 1 17 chain 344951 chr14 107043718 + 23978686 23984043 L1PA7 6471 + 2195 6468 5986 437 0 1 73 0 4 161 8 0 269 0 1 348 1 0 4 0 1 9 5 4 306 17 16 177 1 0 444 2 0 218 0 4 313 1 0 7 1002 0 65 0 2 46 0 1 185 39 0 21 39 0 127 27 28 153 3 1 79 0 2 605 10 9 7 0 1 4 1 0 133 3 0 7 chain 20278 chr14 107043718 + 23986268 23986515 L1PA6 6164 + 5915 6162 56042 247 chain 307367 chr14 107043718 + 24016022 24019885 L1PA6 6164 + 2288 6162 6674 45 0 1 53 0 1 4 1 0 194 13 16 572 25 22 44 5 9 269 2 1 181 1 0 189 0 3 37 0 1 8 1 0 311 0 1 112 0 4 914 0 2 20 0 1 5 4 0 175 0 1 678 chain 222244 chr14 107043718 + 24021460 24024291 L1P2 5180 + 1882 4677 8976 675 8 0 269 0 1 343 12 0 7 5 16 297 26 25 104 0 1 4 1 0 68 1 0 385 28 2 57 2 0 218 0 4 283 2 1 29 1 0 6 chain 311993 chr14 107043718 + 24026246 24029760 L1PA4 6152 + 1667 5186 6572 856 1 0 392 0 1 689 0 1 748 0 4 828 chain 19686 chr14 107043718 + 24030724 24030980 L1PA7 6471 + 5320 5584 56798 149 0 5 28 0 2 27 0 1 52 chain 7649 chr14 107043718 + 24030988 24031091 L1PA7 6471 + 5595 5697 75750 26 1 0 76 chain 28576 chr14 107043718 + 24031095 24031430 L1PA7 6471 + 5704 6039 43989 335 chain 23115 chr14 107043718 + 24031430 24031698 L1PA7 6471 + 6040 6308 52188 268 chain 7941 chr14 107043718 + 24031704 24031818 L1PA7 6471 + 6313 6427 75017 26 0 3 6 3 0 79 chain 95811 chr14 107043718 + 24112369 24113390 L1HS 6032 + 5009 6031 18795 924 0 1 97 chain 88069 chr14 107043718 + 24201966 24203010 MER11C 1089 + 0 1063 20035 250 0 1 66 0 4 46 0 1 322 0 4 5 1 0 38 0 1 37 0 8 34 0 1 245 chain 5893 chr14 107043718 + 24283715 24283800 MER67B 652 + 520 603 81515 19 1 0 31 1 0 33 chain 88548 chr14 107043718 + 24327798 24328818 LTR13 1007 + 0 1007 19935 426 13 0 581 chain 21477 chr14 107043718 + 24473654 24473927 LTR12C 1709 + 691 963 54540 146 1 0 126 chain 2830 chr14 107043718 + 24473927 24473960 LTR12C 1709 + 685 718 83694 33 chain 122669 chr14 107043718 + 24488895 24490210 L1HS 6032 + 1964 3279 15086 1315 chain 523444 chr14 107043718 + 24491435 24497567 L1PA5 6144 + 0 6144 2117 701 0 1 316 10 12 4 1 0 120 0 3 12 9 0 258 1 0 884 3 4 605 0 9 278 1 0 36 0 3 298 0 1 70 0 3 312 1 2 981 0 1 660 14 14 223 1 0 333 chain 549014 chr14 107043718 + 24525954 24532068 L1PA3long 6157 + 5 6157 807 573 0 1 271 1 13 1042 0 3 261 0 1 156 1 0 370 0 1 687 1 0 422 0 21 722 0 3 83 2 0 1522 chain 76205 chr14 107043718 + 24543168 24544222 MER11C 1089 + 7 1063 22511 100 0 1 141 1 2 66 0 4 65 1 0 36 8 4 105 48 47 13 15 13 86 0 4 5 1 0 38 0 1 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255 21 0 9 0 21 171 0 3 68 0 3 142 0 1 169 4 0 249 chain 148968 chr14 107043718 + 24750545 24752201 L1PA4 6152 + 4494 6151 12422 1323 0 1 333 chain 78890 chr14 107043718 + 24756217 24757154 L1PA6 6164 + 2820 3760 21901 369 0 1 493 0 1 10 0 1 65 chain 483168 chr14 107043718 + 24768162 24773999 L1PA7 6471 + 6 6460 3572 362 0 1 42 0 1 282 10 15 364 0 1 296 1 0 273 6 7 82 0 1 532 1 0 12 0 14 347 1 2 136 1 2 12 0 1 133 0 1 71 1 2 46 0 1 196 0 1 41 2 579 660 0 2 586 1 3 75 0 3 426 1 4 88 0 1 750 chain 16860 chr14 107043718 + 24889389 24889574 L1PA3long 6157 + 5971 6157 59962 162 0 1 23 chain 2782 chr14 107043718 + 24904427 24904472 MADE1 96 + 50 96 101754 15 4 5 26 chain 21843 chr14 107043718 + 24931143 24931393 L1PA5 6144 + 5891 6141 54046 250 chain 42196 chr14 107043718 + 24936771 24937287 L1PA7 6471 + 5942 6459 33250 374 8 9 134 chain 4218 chr14 107043718 + 25001477 25001525 MER21B 843 + 157 205 90021 48 chain 235481 chr14 107043718 + 25105468 25108365 L1PA7 6471 + 3559 6470 8584 277 1 0 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27251175 L1PA7 6471 + 3574 5064 15116 255 4 0 34 0 1 136 0 1 190 52 16 7 14 0 63 0 2 256 1 6 190 2 0 218 5 0 115 chain 148301 chr14 107043718 + 27264112 27265766 L1PA3long 6157 + 4499 6153 12466 58 6 1 752 0 4 825 0 1 13 chain 5108 chr14 107043718 + 27420159 27420214 HERV17-int 4347 + 2313 2368 85125 55 chain 37517 chr14 107043718 + 27427634 27428224 LTR43 600 + 0 600 36391 14 67 80 68 2 0 25 3 2 34 5 6 115 0 1 97 2 0 158 chain 90617 chr14 107043718 + 27461516 27462499 L1PA2 6032 + 2483 3467 19571 4 0 1 979 chain 37258 chr14 107043718 + 27490382 27490932 MLT2A2 560 + 0 560 36583 129 0 2 37 13 12 228 0 11 23 24 19 36 17 20 43 chain 48030 chr14 107043718 + 27612284 27612872 LTR66 600 + 0 591 30286 404 3 9 73 3 0 105 chain 20084 chr14 107043718 + 27647486 27647710 L1PA2 6032 + 5797 6028 56276 83 2 9 139 chain 76762 chr14 107043718 + 27649094 27650131 L1PA8 5853 + 4823 5853 22383 182 5 4 123 0 1 243 0 1 187 1 0 44 2 0 30 1 2 38 29 14 8 0 11 33 1 0 16 9 8 85 chain 536975 chr14 107043718 + 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28167998 28174137 L1PA6 6164 + 0 6161 3082 184 5 12 40 0 2 279 0 2 48 1 0 106 0 2 112 0 17 98 1 5 229 0 1 11 0 3 418 0 2 368 0 4 376 7 6 214 4 1 198 4 3 4 0 1 439 24 11 13 0 1 319 0 1 92 1 0 394 15 0 1040 2 1 234 0 4 5 4 0 17 0 7 523 0 5 85 4 5 73 0 1 138 3 0 7 chain 38957 chr14 107043718 + 28179541 28179960 L1PA2 6032 + 5613 6032 35389 419 chain 80388 chr14 107043718 + 28185468 28186802 MER41-int 2638 + 1264 2622 21552 35 27 24 22 1 6 29 0 5 74 0 2 85 0 2 22 0 1 56 11 10 33 1 0 41 0 1 96 3 1 38 2 0 4 4 0 21 22 53 39 0 5 6 36 15 100 5 6 346 38 39 41 66 70 30 chain 554207 chr14 107043718 + 28188442 28194470 L1PA2 6032 + 2 6031 468 1033 0 2 281 1 0 4713 chain 26697 chr14 107043718 + 28209165 28209519 THE1B 368 + 0 356 46689 37 0 5 130 14 13 32 2 0 139 chain 24205 chr14 107043718 + 28239681 28240024 THE1B 368 + 13 366 50491 185 1 0 4 30 41 123 chain 28735 chr14 107043718 + 28277824 28278131 AluYa5 310 + 0 306 43737 132 1 0 174 chain 20224 chr14 107043718 + 28302630 28303007 L1P4 1494 + 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138 4 0 27 1 0 38 12 10 67 1 0 9 1 0 52 2 1 24 10 9 79 chain 84659 chr14 107043718 + 29135329 29136384 L1PA7 6471 + 5402 6465 20691 97 10 11 111 0 3 12 4 5 61 2 0 282 3 7 97 0 1 42 0 1 124 2 0 85 0 1 123 chain 54761 chr14 107043718 + 29150688 29151376 LTR12_ 688 + 0 688 27956 688 chain 31181 chr14 107043718 + 29170824 29171264 MLT2A1 477 + 0 466 40993 15 0 1 46 7 22 86 4 1 10 0 1 22 0 1 171 2 0 8 0 1 14 3 0 16 10 25 26 chain 401928 chr14 107043718 + 29171281 29176239 HERVL-int 5654 + 10 5654 5131 143 0 1 238 0 642 246 0 1 115 0 1 333 7 11 329 0 9 46 0 1 278 0 4 411 0 1 533 7 0 16 0 8 470 0 2 75 0 1 111 11 20 297 3 4 101 9 10 477 0 1 418 0 3 211 0 3 73 chain 33169 chr14 107043718 + 29176239 29176730 MLT2A1 477 + 0 477 39389 66 0 2 101 4 1 12 1 2 19 1 2 180 25 21 8 13 0 23 1 3 37 chain 58010 chr14 107043718 + 29186539 29187283 LTR12 884 + 0 880 26960 25 1 0 30 0 41 235 0 47 43 19 60 266 0 8 125 chain 175256 chr14 107043718 + 29250210 29252153 L1PA3long 6157 + 4212 6157 10816 335 0 1 361 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107043718 + 30041773 30041930 MLT2A2 560 + 0 158 63628 18 0 1 139 chain 44418 chr14 107043718 + 30041930 30042479 MER41A 554 + 0 554 31874 457 0 1 4 1 0 4 0 5 83 chain 116919 chr14 107043718 + 30043913 30045406 L1PB1 5432 + 2982 4482 16069 163 0 1 198 0 14 133 1 2 238 5 1 105 0 5 119 1 2 24 27 15 204 0 1 275 chain 291501 chr14 107043718 + 30047977 30051624 HERVL-int 5654 + 1995 5654 7086 161 16 13 670 0 1 212 0 8 109 9 11 23 10 11 555 4 5 190 0 2 269 3 0 9 1 0 477 5 9 890 1 3 5 2 0 26 chain 94300 chr14 107043718 + 30065022 30066095 L1P1 4361 + 3233 4328 18998 150 0 3 412 0 21 332 1 0 148 6 5 24 chain 126143 chr14 107043718 + 30071994 30073636 THE1B-int 1605 + 0 1600 14531 21 0 1 406 1 26 251 2 3 85 9 4 291 2 0 235 0 1 175 63 0 101 chain 4058 chr14 107043718 + 30089433 30089480 L1MA2 4263 + 1051 1098 91025 47 chain 451148 chr14 107043718 + 30098160 30103628 L1PA6 6164 + 4 6160 4360 84 0 735 19 0 1 55 5 9 195 9 13 1210 20 0 742 0 3 112 2 3 4 0 1 28 1 2 310 2 1 150 0 12 177 53 1 22 0 2 932 4 0 1004 0 1 328 chain 115013 chr14 107043718 + 30106964 30108473 L1P2 5180 + 2 1531 16390 148 1 0 97 1 0 260 1 0 8 1 0 139 4 5 126 10 8 140 0 25 446 19 19 108 chain 27350 chr14 107043718 + 30108473 30108786 L1PA5 6144 + 5814 6128 45763 182 1 2 130 chain 41078 chr14 107043718 + 30237881 30238447 MER41A 554 + 0 554 33918 391 42 17 15 0 8 37 8 13 73 chain 6795 chr14 107043718 + 30301777 30301873 MLT2B2 565 + 0 97 78338 32 3 4 61 chain 14709 chr14 107043718 + 30352946 30353115 L1PA5 6144 + 5974 6144 62666 27 0 1 142 chain 560426 chr14 107043718 + 30363537 30369568 L1PA2 6032 + 0 6032 159 74 0 1 5957 chain 14969 chr14 107043718 + 30384470 30384645 L1PA6 6164 + 5980 6156 62301 37 0 1 138 chain 545414 chr14 107043718 + 30474045 30480055 L1PA3long 6157 + 4 6152 1008 148 0 1 615 8 136 507 0 9 1757 1 0 2136 1 2 837 chain 5105 chr14 107043718 + 30538486 30538543 L1MB7 1623 + 517 574 85137 57 chain 80842 chr14 107043718 + 30562169 30563147 LTR13 1007 + 0 1007 21464 71 1 0 198 0 2 110 4 5 297 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30 8 9 62 chain 34637 chr14 107043718 + 31271565 31272003 MER4A1 472 + 0 445 38261 107 0 4 34 0 1 115 3 4 64 0 1 115 chain 171041 chr14 107043718 + 31277102 31280345 MER4-int 2692 + 157 2681 11048 155 1 0 199 0 1 109 0 60 13 0 4 16 20 20 42 1 15 38 5 9 14 384 0 386 0 3 8 10 0 5 295 0 204 1 0 273 8 10 41 1 0 32 5 162 43 0 2 2 296 0 196 9 7 195 0 1 173 0 23 63 chain 30821 chr14 107043718 + 31280364 31280814 MER4A1 472 + 0 458 41300 126 31 14 25 2 1 58 7 28 17 1 6 183 chain 5568 chr14 107043718 + 31306519 31306588 U3 216 + 0 69 82947 69 chain 8859 chr14 107043718 + 31333545 31333691 Tigger1 2417 + 961 1119 72845 13 8 9 19 0 3 45 7 15 54 chain 3643 chr14 107043718 + 31371051 31371092 MER58A 224 + 42 83 94083 41 chain 15543 chr14 107043718 + 31373755 31374022 Tigger2 2703 + 2278 2563 61599 63 52 67 86 2 0 21 2 7 41 chain 20661 chr14 107043718 + 31408845 31409067 AluYa5 310 + 36 294 55553 105 0 36 117 chain 16052 chr14 107043718 + 31440820 31441016 L1PA5 6144 + 5949 6143 60956 51 1 2 129 3 0 12 chain 63636 chr14 107043718 + 31443423 31444131 L1PA5 6144 + 5432 6140 25493 540 1 0 4 0 1 163 chain 64212 chr14 107043718 + 31493334 31494123 L1PBa1 4058 + 2526 3318 25367 62 4 0 13 0 4 51 0 1 551 10 12 98 chain 324176 chr14 107043718 + 31494133 31498353 L1P3 4156 + 5 4139 6334 154 0 1 82 7 21 56 4 3 78 1 0 265 36 37 135 0 12 743 128 8 218 0 4 6 4 0 303 0 2 443 1 0 944 0 1 312 1 0 120 1 0 10 0 10 117 1 2 9 6 4 9 2 1 24 chain 54521 chr14 107043718 + 31500000 31500644 L1PA7 6471 + 5823 6470 28040 613 0 2 18 1 2 12 chain 20131 chr14 107043718 + 31517676 31518031 THE1B 368 + 0 368 56218 44 9 24 95 13 12 86 59 58 49 chain 7391 chr14 107043718 + 31593086 31593214 MER2 342 + 131 260 76413 4 0 1 12 5 16 6 11 0 90 chain 79614 chr14 107043718 + 31601505 31602393 L1PA3long 6157 + 5264 6151 21716 43 1 0 77 1 0 10 1 2 755 chain 3894 chr14 107043718 + 31612203 31612248 MADE1 96 + 49 94 92184 45 chain 36491 chr14 107043718 + 31612249 31613188 L1MA2 4263 + 3540 4140 37083 32 1 0 12 2 0 7 9 8 63 326 0 105 1 5 25 27 28 38 1 0 93 11 9 93 6 0 47 1 0 9 4 2 8 3 1 15 chain 4512 chr14 107043718 + 31621771 31621827 THE1D 372 + 316 372 88258 56 chain 2299 chr14 107043718 + 31753928 31753981 L1MA8 2339 + 2215 2265 104734 12 8 6 24 1 0 8 chain 110482 chr14 107043718 + 31816951 31818380 L1PA7 6471 + 1574 3030 17009 56 1 3 29 7 0 6 6 12 104 9 17 100 5 0 315 10 5 28 1 23 54 0 1 298 16 9 168 1 12 126 0 1 89 chain 400316 chr14 107043718 + 31865864 31871806 L1PB1 5432 + 19 5281 5151 16 0 2 5 2 0 256 1 4 80 1 0 4 9 8 12 9 2 136 1 0 6 3 4 52 0 3 298 4 3 118 0 4 300 2 0 63 1 0 7 2 0 3 7 0 191 0 6 326 1 2 121 2 0 5 5 17 425 1 0 86 1 3 304 0 3 116 675 0 269 0 2 251 0 1 196 3 0 6 9 0 366 7 9 4 1 0 221 0 5 116 0 1 645 14 12 24 1 0 9 17 12 8 2 0 50 5 4 16 1 0 44 chain 57957 chr14 107043718 + 31868856 31869499 L1PA2 6032 + 5387 6029 26977 625 1 0 17 chain 3125 chr14 107043718 + 31904475 31904509 tRNA-Gly-GGA 38 + 1 35 98584 34 chain 44904 chr14 107043718 + 31918362 31918855 L1PA4 6152 + 5658 6151 31638 493 chain 42411 chr14 107043718 + 31954871 31955485 Tigger1 2417 + 1796 2417 33123 188 0 1 249 1 0 16 9 5 16 0 2 66 14 6 13 27 44 15 chain 39279 chr14 107043718 + 31982127 31982637 THE1C-int 1605 + 0 571 35161 12 4 3 95 0 54 32 1 0 185 0 2 62 3 10 116 chain 6088 chr14 107043718 + 31988534 31988616 MSTA 426 + 330 414 80766 39 0 1 17 1 2 25 chain 41069 chr14 107043718 + 32023768 32024543 MER41A 554 + 0 554 33921 162 249 27 224 0 1 140 chain 7431 chr14 107043718 + 32126814 32126934 L1MB3 1562 + 1433 1552 76301 6 2 0 29 1 0 31 0 3 20 2 1 29 chain 18779 chr14 107043718 + 32133928 32134139 L1PA4 6152 + 3594 3805 57805 211 chain 3251 chr14 107043718 + 32161657 32161693 MLT1F 544 + 2 38 97470 36 chain 10087 chr14 107043718 + 32202044 32202150 U6 107 + 0 106 70221 106 chain 288719 chr14 107043718 + 32273484 32277433 L1PA10 4194 + 252 4161 7169 19 3 1 14 1 0 8 61 52 10 1 0 4 4 7 7 5 0 6 1 0 10 1 0 5 28 11 52 62 60 604 1 0 893 0 4 190 0 1 10 1 2 475 0 4 28 5 4 262 0 1 127 2 1 314 0 3 5 1 0 167 6 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79 chain 514157 chr14 107043718 + 32517315 32523323 L1PA5 6144 + 0 6129 2563 120 0 14 54 0 87 10 1 0 623 0 3 229 0 5 24 9 0 660 0 1 483 2 1 1130 6 9 214 0 2 13 1 3 187 0 4 752 1 0 323 0 1 431 1 0 267 0 15 21 1 0 191 2 1 118 1 0 133 chain 6994 chr14 107043718 + 32540928 32541048 L1PB1 5432 + 5306 5418 77622 21 3 1 4 1 0 14 2 0 26 1 0 20 1 0 12 1 0 14 chain 23074 chr14 107043718 + 32685439 32685744 AluY 311 + 0 302 52254 15 8 5 106 0 1 104 9 8 63 chain 12500 chr14 107043718 + 32700554 32700791 Tigger3a 397 + 58 342 65985 17 15 64 17 2 12 103 33 21 50 chain 64644 chr14 107043718 + 32792883 32793720 L1PA10 4194 + 1288 2127 25114 340 0 2 4 0 1 234 8 7 251 chain 223441 chr14 107043718 + 32793720 32797275 L1PA11 4918 + 1385 4629 8948 72 8 12 328 0 1 17 3 0 12 1 0 16 1 14 61 0 2 8 0 5 29 316 0 44 0 3 95 0 2 89 2 3 6 1 0 28 10 12 12 1 5 73 1 0 29 9 13 36 0 1 215 1 0 163 4 0 128 1 0 128 11 18 252 0 2 190 0 4 153 6 7 124 4 0 226 2 0 8 0 1 58 20 0 21 21 25 52 1 0 25 0 2 96 3 7 10 4 0 31 1 11 8 0 3 12 15 15 67 2 0 11 66 53 15 1 0 13 2 0 11 47 33 18 chain 31623 chr14 107043718 + 32926340 32926846 L1MA3 4352 + 3853 4324 40643 168 2 0 72 44 20 117 4 0 30 2 0 22 2 1 5 1 0 22 4 3 11 chain 20182 chr14 107043718 + 32966588 32966802 AluYb9 318 + 100 314 56160 214 chain 15862 chr14 107043718 + 32966832 32967053 L1MA6 2487 + 1601 1821 61215 45 1 0 14 1 0 119 4 5 37 chain 2981 chr14 107043718 + 32979036 32979075 MIRb 242 + 102 140 100053 13 1 0 25 chain 121299 chr14 107043718 + 32995855 32997423 THE1B-int 1605 + 0 1605 15298 84 0 7 94 17 16 121 0 3 56 0 1 50 8 33 125 0 1 1004 0 1 9 chain 11071 chr14 107043718 + 32997777 32997915 THE1B 368 + 220 355 68450 70 3 0 65 chain 505636 chr14 107043718 + 33088061 33093862 L1PA5 6144 + 3 5877 2943 427 2 1 96 0 13 454 0 26 571 0 1 681 0 1 503 0 2 162 0 7 664 0 19 385 0 1 262 0 2 86 0 1 1014 0 1 494 chain 17788 chr14 107043718 + 33160458 33160651 L1PA5 6144 + 5951 6144 58908 193 chain 17832 chr14 107043718 + 33351813 33352037 L1PA7 6471 + 6226 6451 58847 139 6 7 79 chain 21742 chr14 107043718 + 33442451 33442793 THE1C 375 + 0 364 54178 22 0 5 33 9 23 30 0 1 24 1 5 36 20 19 151 1 0 15 chain 251749 chr14 107043718 + 33495861 33498847 L1PA7 6471 + 3468 6469 8184 29 1 0 126 1 0 43 0 5 354 3 0 28 0 1 203 0 1 264 0 2 678 0 1 199 0 2 79 0 1 130 0 3 514 0 1 146 0 2 35 1 0 17 1 6 121 3 0 10 chain 32195 chr14 107043718 + 33747009 33747363 L1PA2 6032 + 5440 5794 40191 354 chain 29590 chr14 107043718 + 33820842 33821166 AluYb9 318 + 0 318 42495 118 5 0 82 1 0 118 chain 28464 chr14 107043718 + 33824247 33824702 L1M1 2793 + 2251 2685 44175 47 19 17 8 16 0 8 1 0 109 18 15 91 0 1 51 0 1 21 0 1 7 1 0 45 1 0 12 chain 515481 chr14 107043718 + 33825513 33832317 L1PA5 6144 + 1 6135 2495 121 0 14 40 5 26 188 11 7 181 0 1 428 0 1 75 1 0 85 10 1 1734 0 25 141 319 0 130 6 17 155 1 0 559 2 3 65 0 1 290 0 1 78 0 1 899 4 5 662 414 0 200 chain 14102 chr14 107043718 + 33831752 33831917 L1PA5 6144 + 5972 6137 63450 165 chain 33304 chr14 107043718 + 33873986 33874435 MER41A 554 + 0 467 39254 180 7 17 145 0 1 11 0 3 66 9 13 31 chain 8358 chr14 107043718 + 33910318 33910436 LTR32 486 + 16 136 74002 82 7 9 29 chain 8362 chr14 107043718 + 33979475 33979570 MER87B 500 + 0 95 73993 95 chain 24589 chr14 107043718 + 33980473 33980764 AluSp 311 + 8 305 49879 66 0 6 225 chain 13954 chr14 107043718 + 34047914 34048065 L1PA2 6032 + 5881 6032 63663 151 chain 3075 chr14 107043718 + 34071484 34071521 MIR3 191 + 74 112 99025 23 0 1 14 chain 87981 chr14 107043718 + 34078696 34079802 SVA_D 2077 + 414 2077 20049 25 0 116 38 65 29 242 16 8 31 3 0 13 5 493 668 chain 11474 chr14 107043718 + 34079893 34080026 THE1A 353 + 220 353 67784 133 chain 543965 chr14 107043718 + 34139343 34146121 L1PA7 6471 + 0 6469 1089 406 1 4 773 0 1 26 0 4 652 1 0 7 7 8 269 13 14 205 0 1 101 1 0 169 0 1 16 0 1 493 313 0 352 1 0 333 2 0 43 0 1 100 1 2 27 1 0 1299 1 2 311 1 0 78 10 4 256 0 1 509 chain 554354 chr14 107043718 + 34150072 34156222 L1PA3long 6157 + 0 6157 457 6 1 0 2385 1 5 811 0 1 59 6 5 25 0 1 490 0 1 157 0 1 1274 1 2 934 chain 128956 chr14 107043718 + 34185265 34186669 L1PA3long 6157 + 4752 6156 14152 1404 chain 24724 chr14 107043718 + 34225453 34225731 L1PA3long 6157 + 5879 6157 49686 278 chain 5890 chr14 107043718 + 34259165 34259262 MER53 195 + 1 106 81522 23 1 0 4 3 9 60 0 3 6 chain 99635 chr14 107043718 + 34273117 34274220 L1PA5 6144 + 5018 6126 18344 28 0 1 244 0 4 831 chain 26708 chr14 107043718 + 34278100 34278469 THE1D 372 + 0 370 46675 75 19 0 53 0 4 41 6 22 117 0 1 27 1 0 30 chain 2954 chr14 107043718 + 34294476 34297202 L1PA2 6032 + 3307 6024 100333 1746 9 0 971 chain 6055 chr14 107043718 + 34358452 34358524 MSTB 430 + 1 73 80881 72 chain 27944 chr14 107043718 + 34385426 34385722 L1PA3long 6157 + 4923 5219 44962 296 chain 79873 chr14 107043718 + 34385750 34386640 L1PA3long 6157 + 5225 6155 21648 79 1 0 292 0 41 518 chain 22670 chr14 107043718 + 34390342 34391034 L1MA3 4352 + 0 346 52865 12 28 10 15 1 0 65 0 1 52 1 0 12 8 0 9 0 1 5 0 2 1 315 0 120 1 0 11 6 0 30 chain 539632 chr14 107043718 + 34391213 34397659 L1PA7 6471 + 3 6470 1362 225 16 1 100 6 13 69 1 0 618 1 3 8 0 11 344 5 0 192 0 1 145 0 1 315 2 0 5 0 2 429 1 0 142 0 6 423 0 8 161 0 1 4 2 1 119 3 4 136 1 0 430 0 1 741 6 10 283 1 0 13 1 0 17 0 1 635 0 3 220 0 1 463 0 1 16 1 0 4 0 1 131 2 0 9 chain 51846 chr14 107043718 + 34400406 34402282 L1MA3 4352 + 3082 4248 28925 76 0 1 50 4 3 149 14 19 5 1 0 17 2 1 176 1 0 5 3 6 53 1 2 49 722 326 26 1 0 8 8 10 28 30 14 7 3 0 65 301 0 20 1 5 32 5 0 13 chain 108964 chr14 107043718 + 34411300 34412833 SVA_D 2077 + 31 2077 17186 562 1 41 51 0 781 211 308 0 400 chain 27937 chr14 107043718 + 34412137 34412432 AluYa5 310 + 15 310 44972 295 chain 40605 chr14 107043718 + 34425471 34426009 LTR10A 586 + 17 586 34220 42 0 8 7 0 1 26 2 23 16 1 0 62 9 10 69 1 2 303 chain 68335 chr14 107043718 + 34427190 34428048 THE1B-int 1605 + 741 1600 24376 180 5 6 13 0 2 7 3 4 4 1 0 268 3 1 374 chain 20277 chr14 107043718 + 34428053 34428399 THE1B 368 + 0 368 56044 40 0 15 108 71 80 51 1 0 17 1 0 57 chain 15522 chr14 107043718 + 34446020 34448413 MER51-int 1546 + 118 1542 61623 30 2 1 10 631 457 118 7 0 55 6 0 6 1441 659 39 12 13 36 chain 23298 chr14 107043718 + 34448426 34448778 MER51B 395 + 0 388 51934 34 13 32 33 11 17 129 1 0 49 3 15 79 chain 125436 chr14 107043718 + 34475468 34476927 SVA_B 1603 + 0 1600 14639 19 0 28 799 0 1 4 3 1 31 0 38 27 1 79 562 3 1 10 chain 32540 chr14 107043718 + 34476927 34477378 L1PB3 3668 + 2689 3141 39920 201 11 14 84 2 0 17 1 2 76 2 1 57 chain 15725 chr14 107043718 + 34546713 34546877 U1 164 + 0 164 61380 164 chain 4306 chr14 107043718 + 34571529 34571591 L1MC1 2226 + 1983 2043 89455 12 3 1 47 chain 2961 chr14 107043718 + 34612348 34612423 MLT1D 503 + 86 155 100279 14 32 26 29 chain 30783 chr14 107043718 + 34650295 34650729 LTR7B 505 + 0 505 41316 105 0 10 60 0 38 12 3 27 26 0 2 85 1 0 73 17 16 20 0 1 5 2 0 25 chain 28223 chr14 107043718 + 34654769 34655190 LTR7B 505 + 0 495 44527 108 0 10 19 0 1 37 0 38 12 21 16 8 0 29 2 0 2 36 0 1 43 1 0 79 14 13 41 chain 4969 chr14 107043718 + 34661801 34661867 MLT1A0 366 + 288 353 85812 61 1 0 4 chain 2567 chr14 107043718 + 34674607 34674655 L1MC1 2226 + 2083 2128 103248 18 3 1 20 1 0 6 chain 10427 chr14 107043718 + 34776644 34776983 MLT1B 390 + 30 390 69561 25 0 10 20 90 100 13 64 68 10 0 7 43 9 0 18 1 0 46 chain 22471 chr14 107043718 + 34790865 34791138 AluSp 311 + 23 298 53160 34 4 6 235 chain 72207 chr14 107043718 + 34798547 34799390 L1PA6 6164 + 5211 6161 23482 10 0 104 82 0 3 751 chain 13924 chr14 107043718 + 34808991 34809168 MER2 342 + 83 260 63707 177 chain 9691 chr14 107043718 + 34818621 34818859 Tigger7 736 + 82 480 71072 40 74 236 70 1 2 26 12 9 15 chain 4011 chr14 107043718 + 34924955 34925068 MSTB 430 + 267 382 91372 22 24 28 30 22 20 15 chain 131217 chr14 107043718 + 35038573 35040277 SVA_F 1814 + 335 1813 13897 364 0 40 122 275 0 86 0 15 39 2 0 10 1 0 166 2 0 10 1 0 626 chain 1117 chr14 107043718 + 35039103 35039133 SVA_F 1814 + 855 885 95512 30 chain 14483 chr14 107043718 + 35039145 35039334 SVA_F 1814 + 898 1102 39431 50 3 18 136 chain 21660 chr14 107043718 + 35061535 35061773 L1PA3long 6157 + 5919 6157 54281 238 chain 83263 chr14 107043718 + 35075657 35076604 L1PA5 6144 + 5191 6142 20973 150 0 2 84 0 6 702 4 0 7 chain 34826 chr14 107043718 + 35194277 35194682 L1PA7 6471 + 6054 6459 38139 405 chain 4457 chr14 107043718 + 35240799 35240873 MER33 330 + 8 84 88573 23 9 10 21 0 1 21 chain 12370 chr14 107043718 + 35240912 35241077 MER2 342 + 35 207 66194 33 0 3 8 4 8 120 chain 4773 chr14 107043718 + 35328960 35329039 L1MC2 1988 + 1079 1159 86839 14 8 9 57 chain 25258 chr14 107043718 + 35330132 35330421 AluSp 311 + 10 299 48854 289 chain 47288 chr14 107043718 + 35347909 35348465 LTR6B 557 + 0 557 30540 356 1 2 43 1 0 46 1 2 108 chain 40844 chr14 107043718 + 35396231 35396703 LTR7Y 441 + 0 441 34064 165 31 0 276 chain 27899 chr14 107043718 + 35495139 35495702 L1M1 2793 + 661 1181 45040 39 41 29 11 2 0 4 2 0 21 47 24 13 1 0 29 13 10 52 17 14 44 20 24 28 1 0 178 chain 143760 chr14 107043718 + 35500928 35503091 L1MA3 4352 + 2255 4352 12786 59 1 0 185 1 6 29 0 1 15 0 2 293 36 8 19 2 0 5 18 27 271 0 1 16 0 2 54 3 0 108 0 1 24 2 0 6 20 1 264 0 1 208 0 1 42 0 1 114 5 35 37 102 35 109 4 0 7 7 8 10 2 0 15 5 17 19 29 24 17 chain 50956 chr14 107043718 + 35587275 35587876 L1PA6 6164 + 5561 6161 29225 400 0 1 192 2 0 7 chain 5282 chr14 107043718 + 35589074 35589140 MER6B 211 - 0 68 84272 14 0 2 52 chain 268123 chr14 107043718 + 35619353 35622521 L1PA6 6164 + 3005 6162 7757 165 1 0 109 0 2 84 0 1 162 25 1 156 0 2 39 0 10 283 1 0 349 1 0 88 6 7 61 4 5 120 1 0 102 0 1 146 1 0 1264 chain 14149 chr14 107043718 + 35634149 35634360 Tigger4a 237 + 0 230 63381 40 14 32 97 4 5 56 chain 51324 chr14 107043718 + 35642738 35643333 L1PA5 6144 + 5539 6135 29112 271 0 1 324 chain 317988 chr14 107043718 + 35731044 35735683 L1PB1 5432 + 111 5409 6446 297 1 2 457 0 1 230 0 1 85 1 0 137 1 2 74 14 0 198 0 7 303 0 3 200 1 0 139 322 0 234 6 8 93 0 5 42 0 1029 63 31 14 490 0 1 212 2 6 187 4 0 74 0 2 90 55 44 98 1 0 75 0 2 19 21 22 46 13 11 24 1 0 9 1 0 9 24 18 46 2 1 16 1 0 44 2 1 14 24 13 14 7 5 4 1 0 14 2 0 24 1 2 19 1 0 13 1 0 5 chain 4630 chr14 107043718 + 35745328 35745387 L1MA9 1812 + 784 842 87643 28 1 0 30 chain 4122 chr14 107043718 + 35788635 35788683 MER57B2 428 + 371 419 90640 48 chain 8469 chr14 107043718 + 35874890 35874994 MLT1B 390 + 284 388 73754 104 chain 20115 chr14 107043718 + 35876316 35876674 THE1B 368 + 0 365 56242 44 65 76 52 4 3 27 2 0 91 0 1 12 8 6 53 chain 4177 chr14 107043718 + 35966794 35966841 MLT1B 390 + 290 337 90281 47 chain 9287 chr14 107043718 + 36002853 36002980 MER77 626 + 495 618 71939 53 4 0 70 chain 9350 chr14 107043718 + 36125358 36125468 MER30 238 + 128 238 71818 110 chain 559563 chr14 107043718 + 36184557 36190694 L1PA3long 6157 + 7 6157 186 908 0 1 371 0 1 123 0 9 2526 0 1 1043 0 1 1166 chain 10261 chr14 107043718 + 36207500 36207622 MER85 139 + 4 136 69876 86 0 10 36 chain 27281 chr14 107043718 + 36244085 36244421 L1PA7 6471 + 6132 6470 45850 72 7 9 257 chain 29441 chr14 107043718 + 36244909 36245249 L1PA5 6144 + 5798 6138 42684 340 chain 341906 chr14 107043718 + 36245734 36249891 L1PA7 6471 + 2244 6457 6024 182 0 3 102 0 2 17 0 1 80 3 1 27 0 4 85 0 3 112 0 2 24 0 4 392 0 2 242 1 0 31 3 1 10 1 10 21 0 5 12 2 1 209 1 0 170 19 3 164 0 3 133 0 2 7 0 3 171 0 1 36 0 2 101 1 0 48 4 3 135 0 4 688 0 3 93 0 4 16 3 4 20 14 17 58 0 3 86 1 4 130 0 1 103 2 0 55 1 0 96 0 4 60 0 2 140 0 10 45 chain 52695 chr14 107043718 + 36341812 36342530 LTR12 884 + 0 884 28668 25 1 0 66 0 2 5 2 0 102 1 158 19 2 0 348 28 3 16 1 34 28 6 10 68 chain 37237 chr14 107043718 + 36354341 36354779 L1P1 4361 + 3892 4328 36594 258 1 0 149 7 6 23 chain 68973 chr14 107043718 + 36357282 36358052 L1PA3long 6157 + 5380 6152 24217 172 0 1 270 1 2 327 chain 122646 chr14 107043718 + 36379677 36381517 L1PB3 3668 + 1830 3614 15089 250 31 27 201 0 1 33 2 1 63 26 28 141 0 2 87 1 0 93 0 1 6 2 1 8 0 1 150 0 1 63 2 0 10 0 2 291 1 0 81 0 1 13 6 5 19 0 1 42 0 8 5 4 0 16 49 0 13 1 0 8 1 0 25 8 6 32 7 3 13 21 17 15 chain 188761 chr14 107043718 + 36409423 36411729 L1P2 5180 + 2 2337 10177 148 2 1 43 1 0 53 1 0 56 19 46 166 1 0 272 1 0 6 1 0 207 1 8 846 0 1 482 chain 505272 chr14 107043718 + 36411736 36417837 L1PA6 6164 + 2 6162 2956 193 0 1 304 15 14 425 16 41 84 1 2 109 15 24 661 0 1 471 3 4 374 0 3 454 11 12 523 0 1 49 0 1 619 0 2 652 0 1 987 1 2 36 0 14 88 2 0 8 chain 13114 chr14 107043718 + 36469465 36469652 MER30 238 + 40 237 64906 67 8 0 11 2 20 99 chain 23460 chr14 107043718 + 36610424 36610707 L1PA10 4194 + 3834 4116 51650 248 1 0 34 chain 3745 chr14 107043718 + 36614250 36614376 L1MC3 1789 + 838 969 93291 42 68 73 16 chain 9714 chr14 107043718 + 36616871 36616998 MER85 139 + 2 139 71020 87 1 11 39 chain 6539 chr14 107043718 + 36722237 36722433 L1MC1 2226 + 2021 2188 79198 26 25 16 20 5 0 15 8 6 19 16 6 5 1 0 14 7 6 30 1 0 4 chain 23319 chr14 107043718 + 36752646 36752996 THE1C 375 + 0 373 51904 180 0 1 4 1 0 8 1 2 83 28 48 23 6 8 16 chain 20933 chr14 107043718 + 36770083 36770354 L1PA16 3655 + 3303 3575 55217 112 5 6 154 chain 26542 chr14 107043718 + 36782676 36782959 L1PA2 6032 + 5743 6026 46904 283 chain 68955 chr14 107043718 + 36814432 36815335 L1PA8 5853 + 4957 5853 24223 46 8 6 75 0 2 478 1 0 44 2 0 71 1 0 5 13 12 44 2 1 13 7 6 93 chain 4009 chr14 107043718 + 36834347 36834500 MIRb 242 + 18 184 91381 35 96 109 22 chain 76084 chr14 107043718 + 36861865 36862767 L1PA7 6471 + 5554 6466 22545 52 0 11 246 0 1 595 2 0 7 chain 94214 chr14 107043718 + 36980741 36981848 L1PA5 6144 + 5033 6144 19011 89 0 1 148 4 8 144 1 0 721 chain 48447 chr14 107043718 + 36984797 36985372 L1PA2 6032 + 5490 6027 30135 488 36 0 41 2 0 8 chain 77327 chr14 107043718 + 37105907 37106943 MER11A 1151 + 7 1151 22242 54 1 100 69 1 0 64 4 0 30 0 2 114 0 1 94 0 1 96 3 1 51 0 1 38 12 6 81 0 33 41 18 0 36 0 1 60 6 7 163 chain 3043 chr14 107043718 + 37161610 37161652 MLT1B 390 + 134 185 99391 10 0 2 26 0 7 6 chain 83474 chr14 107043718 + 37162384 37163294 L1PA3long 6157 + 5240 6150 20918 910 chain 47554 chr14 107043718 + 37167365 37168049 LTR8 732 + 0 717 30459 19 0 1 12 0 9 115 7 6 254 1 4 48 1 4 54 42 60 131 chain 504204 chr14 107043718 + 37187821 37193950 L1PA6 6164 + 56 6149 2993 393 19 0 120 1 0 218 0 17 29 0 1 32 22 4 249 0 1 6 10 9 180 0 1 521 5 0 487 4 1 72 0 4 636 0 2 136 10 0 22 1 0 20 1 0 83 1 0 378 1 0 271 1 0 566 0 1 716 0 1 9 2 1 353 1 0 553 chain 110693 chr14 107043718 + 37204765 37207095 THE1B-int 1605 + 13 1605 16982 245 0 20 88 853 85 237 64 69 460 4 5 196 0 4 183 chain 71817 chr14 107043718 + 37214443 37215449 LTR13 1007 + 0 1007 23588 68 23 17 296 8 9 74 1 6 6 3 0 152 2 1 58 7 0 10 1 14 101 5 6 157 3 1 31 chain 8572 chr14 107043718 + 37216140 37216264 L1M1 2793 + 2570 2695 73513 49 1 5 4 1 0 49 1 0 8 1 0 10 chain 544020 chr14 107043718 + 37293328 37299450 L1PA4 6152 + 6 6152 1082 427 7 6 705 0 1 298 0 4 782 0 1 1710 0 1 695 0 5 663 0 4 457 0 1 179 0 8 199 chain 25582 chr14 107043718 + 37340708 37341085 Tigger3b 1229 + 728 1146 48345 34 1 2 5 3 0 89 5 16 94 0 3 20 1 11 65 1 20 59 chain 3603 chr14 107043718 + 37412434 37412550 L1ME3A 1206 + 988 1094 94401 21 51 42 28 1 0 15 chain 216826 chr14 107043718 + 37444692 37447084 L1PA3long 6157 + 3762 6157 9123 4 1 0 591 0 4 1796 chain 108036 chr14 107043718 + 37496125 37497305 L1PA2 6032 + 3841 5029 17320 876 1 9 303 chain 509522 chr14 107043718 + 37501628 37507758 L1PA6 6164 + 2 6159 2794 45 1 0 398 0 2 120 1 0 116 1 0 4 0 1 172 0 1 588 0 4 59 0 5 227 1 5 27 1 6 260 1 0 283 0 2 765 0 1 96 0 1 82 0 3 245 0 1 185 2 0 248 0 1 17 3 0 181 0 2 213 0 4 316 0 2 284 0 3 310 8 0 12 0 2 156 1 0 294 0 1 407 chain 12681 chr14 107043718 + 37654461 37654632 MSTA 426 + 246 426 65655 54 0 5 7 3 6 51 0 1 56 chain 93748 chr14 107043718 + 37663747 37665081 L1PA11 4918 + 3264 4578 19074 172 0 1 338 0 1 310 19 20 138 1 0 4 0 1 64 0 4 11 5 0 62 21 18 66 2 0 14 1 0 20 21 12 10 13 9 15 1 0 13 2 0 11 chain 120440 chr14 107043718 + 37692915 37694726 L1MA2 4263 + 2286 4055 15455 42 0 1 209 0 1 39 0 2 5 5 3 27 0 2 27 1 0 6 0 1 15 0 18 82 0 2 140 1 2 61 1 0 10 75 0 7 2 0 100 4 20 90 1 3 51 0 1 55 46 16 168 0 1 73 1 0 5 0 1 7 9 6 74 3 34 113 3 0 150 25 21 78 chain 47009 chr14 107043718 + 37840087 37840683 L1P3 4156 + 3552 4139 30655 446 9 1 82 1 4 20 5 2 6 1 0 26 chain 122807 chr14 107043718 + 37891049 37892621 THE1B-int 1605 + 0 1605 15056 430 0 24 9 1 4 9 10 11 219 0 1 319 4 6 342 0 1 224 0 1 5 chain 134290 chr14 107043718 + 37921004 37922480 L1PA4 6152 + 3701 5177 13619 77 0 1 138 1 0 1260 chain 84859 chr14 107043718 + 37957817 37958856 MER11C 1089 + 0 1063 20646 225 16 30 58 0 4 344 1 2 27 0 4 43 0 1 325 chain 67650 chr14 107043718 + 37980758 37981768 MER11A 1151 + 7 1147 24533 57 1 100 14 8 0 52 0 4 60 5 0 133 16 17 92 1 2 145 5 7 118 44 75 37 0 1 9 1 0 29 0 1 4 1 0 17 6 7 119 0 4 36 chain 10050 chr14 107043718 + 37994572 37994695 MER50 708 + 562 686 70301 28 0 1 95 chain 8990 chr14 107043718 + 38010931 38011040 MSTA-int 1630 + 1 110 72579 109 chain 48404 chr14 107043718 + 38011040 38011620 LTR14C 587 + 0 587 30145 54 0 7 526 chain 119944 chr14 107043718 + 38056811 38058979 L1PA3long 6157 + 3974 6157 15548 553 0 14 843 0 1 772 chain 41728 chr14 107043718 + 38076452 38076908 L1PA3long 6157 + 5701 6157 33533 456 chain 170816 chr14 107043718 + 38094510 38096560 L1PA7 6471 + 4394 6438 11062 28 0 1 228 0 1 16 0 4 281 4 0 32 2 0 33 0 1 312 6 2 783 4 0 148 0 1 173 chain 83017 chr14 107043718 + 38102490 38103431 L1PA4 6152 + 5197 6139 21012 878 0 1 63 chain 76884 chr14 107043718 + 38118098 38119067 LTR5_Hs 974 + 0 974 22351 169 1 0 119 0 1 178 0 1 188 1 0 163 8 15 31 8 6 103 chain 56701 chr14 107043718 + 38148039 38148906 MER4D1 891 + 0 884 27360 30 0 1 10 0 1 8 0 1 62 2 1 196 0 1 105 1 0 13 1 0 38 1 20 31 10 12 70 1 6 55 52 51 100 18 9 63 chain 26607 chr14 107043718 + 38180030 38180384 THE1A 353 + 0 353 46820 103 8 7 92 1 0 98 1 2 51 chain 37131 chr14 107043718 + 38190637 38191083 LTR7 482 + 0 482 36662 263 1 32 17 0 1 70 1 3 33 12 14 49 chain 299210 chr14 107043718 + 38191085 38194820 HERVH-int 3825 + 0 3825 6854 532 5 0 38 1 0 10 1 0 24 28 0 13 0 17 23 22 0 41 46 1 21 61 0 9 2 1 23 5 5 21 1 0 444 15 0 462 4 31 1376 0 3 25 8 218 11 6 0 9 3 9 408 0 13 37 chain 38897 chr14 107043718 + 38196078 38196525 LTR7 482 + 0 480 35432 251 1 32 136 0 2 59 chain 17453 chr14 107043718 + 38233900 38234150 MER2 342 + 89 341 59289 26 0 1 14 0 1 5 2 1 153 8 9 42 chain 16989 chr14 107043718 + 38269899 38270139 L1PA16 3655 + 3353 3593 59818 20 2 4 143 0 1 54 8 5 13 chain 15535 chr14 107043718 + 38274545 38274708 L1PA2 6032 + 5858 6021 61606 163 chain 31073 chr14 107043718 + 38281578 38282168 L1PB1 5432 + 4876 5427 41069 154 0 10 43 48 31 24 10 8 11 6 2 9 2 0 51 1 0 17 1 0 45 1 0 15 31 20 11 7 4 15 2 0 24 1 0 21 2 1 12 1 0 18 2 0 5 chain 20772 chr14 107043718 + 38287821 38288192 L1MA5A 2387 + 2039 2359 55403 23 1 0 46 1 0 49 2 0 62 3 0 11 28 0 65 1 0 11 25 11 23 1 0 19 chain 5585 chr14 107043718 + 38298817 38299026 L1MCa 1829 + 32 172 82874 5 2 0 34 1 0 11 10 5 13 2 0 22 17 5 10 61 14 21 chain 5315 chr14 107043718 + 38304249 38304341 L1PA15 4387 + 494 589 84116 37 20 23 35 chain 64954 chr14 107043718 + 38325336 38326089 L1PA6 6164 + 5409 6162 25198 566 1 2 5 1 0 180 chain 41830 chr14 107043718 + 38331588 38332110 MER41A 554 + 13 554 33468 27 0 2 107 1 0 192 0 6 120 3 15 72 chain 25333 chr14 107043718 + 38354347 38354695 THE1B 368 + 0 357 48739 44 0 15 113 16 15 12 4 0 94 1 0 64 chain 264378 chr14 107043718 + 38413208 38417200 L1PA10 4194 + 233 4161 7842 9 1 0 8 1 0 22 2 0 15 1 0 5 82 46 18 1 0 5 7 6 7 1 0 6 1 0 14 19 0 94 2 0 191 1 2 198 0 4 6 24 15 6 0 1 138 0 218 13 219 1 65 0 3 119 20 21 507 8 7 99 14 10 185 0 3 101 4 6 199 17 6 11 0 2 38 1 0 229 10 18 122 3 1 473 1 2 5 1 0 133 0 2 86 11 13 39 0 3 321 8 7 33 1 0 11 chain 104096 chr14 107043718 + 38451199 38452642 L1PA10 4194 + 1903 3315 17810 215 0 3 98 3 7 211 0 1 7 1 0 84 3 4 95 0 2 20 3 0 74 0 1 125 5 4 101 3 1 161 48 12 186 chain 61980 chr14 107043718 + 38452642 38453426 L1PA10 4194 + 3319 4112 25871 415 0 2 230 9 13 38 0 4 55 1 0 36 chain 3685 chr14 107043718 + 38453434 38453480 L1PA10 4194 + 4116 4161 93708 34 1 0 11 chain 118692 chr14 107043718 + 38477194 38478777 THE1B-int 1605 + 0 1605 15774 112 19 18 4 0 1 295 1 26 27 2 3 580 1 0 4 4 5 92 1 2 29 1 0 98 18 15 247 1 0 47 chain 14864 chr14 107043718 + 38533404 38533582 L1PA7 6471 + 6280 6458 62435 178 chain 28494 chr14 107043718 + 38548779 38549081 AluYa5 310 + 0 301 44139 132 1 0 169 chain 53278 chr14 107043718 + 38557842 38558466 L1PA6 6164 + 5523 6148 28472 125 0 1 499 chain 6951 chr14 107043718 + 38566013 38566096 MER4D1 891 + 716 799 77772 83 chain 116182 chr14 107043718 + 38621425 38622972 THE1B-int 1605 + 0 1585 16192 41 1 2 190 12 15 135 0 5 40 3 28 219 0 3 77 33 0 14 10 43 134 5 6 633 chain 542025 chr14 107043718 + 38634947 38640981 L1PA3long 6157 + 1 6157 1203 775 0 128 3596 0 1 219 1 0 491 13 5 892 0 2 47 chain 9598 chr14 107043718 + 38642777 38642894 THE1D 372 + 249 366 71273 58 1 0 4 0 1 54 chain 454648 chr14 107043718 + 38671636 38677290 L1PA6 6164 + 0 6158 4270 91 0 735 1272 30 0 115 0 2 110 1 0 149 0 1 218 0 59 438 0 2 111 1 0 135 1 0 313 1 0 40 0 1 251 1 0 211 4 5 6 1 0 68 274 0 556 0 1 243 5 0 943 1 16 59 0 2 5 chain 20954 chr14 107043718 + 38677290 38677559 LTR66 600 + 264 546 55185 147 2 0 4 1 0 54 0 16 61 chain 45228 chr14 107043718 + 38685766 38686257 L1PA3long 6157 + 5666 6157 31462 491 chain 272006 chr14 107043718 + 38713382 38716458 L1PA4 6152 + 3063 6143 7657 98 4 5 50 0 3 2924 chain 370554 chr14 107043718 + 38764054 38768840 L1PA5 6144 + 0 6138 5643 120 0 14 67 0 8 416 0 1 544 9 0 66 6 7 580 317 0 482 4 1 43 0 2 23 0 2 787 1 2 517 1 0 61 59 1713 532 1 0 150 chain 29869 chr14 107043718 + 38779640 38780193 L1MA4 2864 + 2282 2809 42167 16 0 1 35 3 0 43 0 2 105 16 15 142 1 0 34 3 0 11 1 0 4 61 34 12 44 51 22 chain 29040 chr14 107043718 + 38807105 38807534 L1PA11 4918 + 4066 4499 43262 59 0 1 5 3 2 180 0 4 12 3 9 55 2 1 13 2 0 58 11 9 14 1 0 11 chain 289712 chr14 107043718 + 38811775 38815811 L1PB1 5432 + 1348 5413 7136 49 1 0 6 8 0 638 5 6 163 18 12 30 7 8 240 8 7 154 1 0 164 0 1 16 1 0 81 0 2 139 0 2 5 2 0 194 0 1 194 0 6 11 0 4 39 0 174 284 0 9 458 0 1 121 0 1 45 11 8 93 5 3 86 1 5 7 23 0 190 7 0 41 0 1 5 1 0 50 106 12 24 1 0 9 1 0 9 5 2 9 2 0 48 7 6 16 1 0 44 1 0 15 3 0 14 9 0 10 33 28 43 1 0 13 1 0 9 chain 44644 chr14 107043718 + 38819238 38819754 MER9a1 513 + 0 513 31767 244 8 5 264 chain 21393 chr14 107043718 + 38857741 38857998 L1PA7 6471 + 6204 6469 54640 95 1 9 161 chain 157342 chr14 107043718 + 38912942 38915514 L1PA13 3608 + 114 2308 11922 22 14 11 17 2 1 12 3 0 24 28 17 71 8 6 118 1 0 15 2 1 16 2 0 7 2 0 6 7 5 19 1 0 18 3 1 15 2 0 114 2 0 48 3 1 127 0 4 27 0 3 97 0 7 105 1 0 327 17 19 5 0 3 84 4 0 18 1 0 56 314 0 565 40 0 182 chain 535739 chr14 107043718 + 38921695 38927822 L1PA5 6144 + 0 6132 1581 62 0 14 74 8 9 874 1 0 294 3 4 785 0 2 1047 3 5 211 0 1 548 1 2 419 0 1 220 16 0 722 2 0 518 0 1 319 chain 14471 chr14 107043718 + 38948284 38948522 L1PA16 3655 + 3017 3250 62933 29 1 0 22 2 0 57 3 5 5 2 0 69 16 14 32 chain 231721 chr14 107043718 + 38966756 38969351 L1PA5 6144 + 3542 6144 8699 739 0 2 1008 0 4 821 0 1 27 chain 130371 chr14 107043718 + 38985077 38986501 L1PA3long 6157 + 4733 6157 13991 1424 chain 6651 chr14 107043718 + 38987294 38987381 HY1 111 + 19 111 78807 22 1 5 37 0 1 27 chain 14561 chr14 107043718 + 38990076 38990282 MER107 203 + 1 203 62835 39 6 0 90 1 0 32 1 4 37 chain 471032 chr14 107043718 + 39017171 39022511 L1PA4 6152 + 1 5334 3825 71 7 0 45 1 0 4 0 1 458 1 0 63 2 0 686 0 3 5 8 5 786 0 2 298 0 3 2515 7 0 351 0 5 32 chain 4094 chr14 107043718 + 39061124 39061221 MER5C 305 + 190 289 90820 36 30 35 8 3 0 20 chain 296179 chr14 107043718 + 39203351 39208251 L1PBa1 4058 + 10 4040 6944 25 11 1 10 19 16 278 1 0 29 0 1 151 10 11 17 18 17 52 73 72 122 5 6 245 1 0 40 1 0 197 9 30 121 1 0 216 1 0 108 0 17 30 306 0 52 250 0 19 0 3 162 17 6 44 0 8 143 2 0 5 8 10 96 299 0 95 9 1 496 0 3 183 0 1 248 0 1 37 1 0 121 1 0 96 3 0 14 1 0 6 1 0 29 2 1 40 2 0 108 3 1 20 1 0 9 13 5 10 2 0 19 7 5 25 1 0 9 2 1 10 2 0 3 1 0 7 1 0 7 1 0 17 1 0 42 chain 3709 chr14 107043718 + 39213032 39213075 MER3 215 - 0 43 93543 43 chain 88121 chr14 107043718 + 39472583 39473588 L1PA5 6144 + 5130 6138 20026 564 0 1 115 1 2 81 0 1 244 chain 46493 chr14 107043718 + 39482613 39483139 L1P1 4361 + 3199 3726 30850 310 0 1 216 chain 3955 chr14 107043718 + 39483829 39483879 L1MC4 1079 + 142 192 91724 50 chain 25107 chr14 107043718 + 39495748 39496094 THE1B 368 + 0 355 49105 44 0 15 107 7 6 28 2 0 91 6 3 61 chain 123761 chr14 107043718 + 39496106 39497671 THE1B-int 1605 + 0 1600 14888 241 0 3 92 0 2 92 1 26 224 1 2 28 1 2 256 0 3 629 chain 25131 chr14 107043718 + 39497676 39498035 THE1B 368 + 0 368 49071 13 2 0 31 5 20 102 7 6 21 3 1 100 1 0 74 chain 12862 chr14 107043718 + 39510025 39510288 L1PB1 5432 + 4813 5422 65326 10 0 12 105 69 406 27 1 0 18 1 0 13 1 0 18 chain 166268 chr14 107043718 + 39510849 39512677 L1PA3long 6157 + 4328 6157 11321 7 0 2 120 1 0 1700 chain 17256 chr14 107043718 + 39516677 39516888 L1PA16 3655 + 1727 1937 59509 68 1 0 142 chain 41035 chr14 107043718 + 39528008 39528496 L1PA7 6471 + 5961 6452 33944 29 0 3 67 0 1 138 1 0 253 chain 12621 chr14 107043718 + 39534163 39534358 MER31A 484 + 178 383 65773 62 20 27 102 1 4 10 chain 49201 chr14 107043718 + 39552128 39552681 L1P1 4361 + 3745 4297 29867 406 1 0 146 chain 45445 chr14 107043718 + 39560415 39560920 L1PA3long 6157 + 5587 6094 31344 419 0 2 86 chain 192405 chr14 107043718 + 39595264 39597576 L1PA7 6471 + 4145 6470 9999 275 1 0 132 0 1 218 0 9 438 0 1 401 0 5 213 0 5 458 21 7 9 1 8 145 chain 89839 chr14 107043718 + 39598970 39600109 L1P3 4156 + 2988 4135 19713 61 0 4 40 0 4 240 11 2 7 0 10 178 0 1 429 0 1 142 2 0 7 2 1 20 chain 69317 chr14 107043718 + 39630237 39631006 L1P1 4361 + 3190 3959 24156 769 chain 547432 chr14 107043718 + 39655916 39662030 L1PA3long 6157 + 39 6155 898 697 1 0 350 0 3 641 0 1 966 1 0 3458 chain 89122 chr14 107043718 + 39693099 39694181 L1PA7 6471 + 5388 6468 19834 233 1 0 80 24 21 314 1 2 300 0 1 129 chain 3431 chr14 107043718 + 39741024 39741087 L1MA3 4352 + 4248 4308 95805 12 2 0 22 7 6 20 chain 31423 chr14 107043718 + 39893201 39893669 MLT2A1 477 + 1 475 40797 43 54 12 86 0 1 25 1 5 151 1 0 69 0 44 38 chain 455867 chr14 107043718 + 39893671 39899252 HERVL-int 5654 + 0 5654 4240 641 0 1 13 1 0 283 1 6 88 0 1 91 2 0 289 1 2 363 1 0 5 0 1 97 2 12 364 0 1 564 1 5 795 0 1 61 17 29 700 0 1 321 0 4 27 1 7 334 0 16 162 0 3 146 0 1 8 0 5 158 0 4 44 chain 29594 chr14 107043718 + 39899252 39899630 MLT2A1 477 + 0 382 42490 142 1 2 24 1 5 150 1 0 59 chain 165053 chr14 107043718 + 39935408 39937195 L1PA2 6032 + 4239 6026 11405 1787 chain 64211 chr14 107043718 + 39942375 39943070 L1PA4 6152 + 4845 5540 25368 695 chain 51977 chr14 107043718 + 39952100 39952716 L1PA10 4194 + 3466 4082 28880 616 chain 114524 chr14 107043718 + 39961986 39963477 L1PB1 5432 + 3017 4508 16472 336 0 3 209 0 1 136 8 8 15 8 0 170 0 1 545 6 5 29 0 4 29 chain 14544 chr14 107043718 + 40006858 40007046 MLT2A2 560 + 0 190 62846 13 0 3 164 1 0 10 chain 323724 chr14 107043718 + 40007232 40011408 HERVL-int 5654 + 1339 5547 6342 218 1 0 26 0 1 68 0 4 139 13 11 22 12 7 203 0 1 248 4 1 400 0 1 92 0 9 290 0 3 75 3 4 172 0 2 161 1 2 268 0 1 768 2 11 123 0 1 214 0 1 114 0 1 9 0 1 111 0 2 25 5 6 347 4 6 10 0 1 28 chain 5998 chr14 107043718 + 40041037 40041137 MLT2C1 407 + 0 102 81083 38 17 19 45 chain 9116 chr14 107043718 + 40041763 40041995 Tigger3c 601 + 331 569 72310 13 1 0 23 0 10 7 2 0 72 30 0 9 48 77 27 chain 143410 chr14 107043718 + 40081757 40083673 L1PA11 4918 + 2590 4504 12821 130 1 0 341 0 3 498 1 0 98 3 0 229 0 8 284 1 6 26 3 0 118 1 0 3 4 0 59 2 1 13 1 0 14 7 0 6 0 7 40 2 0 15 1 0 15 chain 111389 chr14 107043718 + 40089238 40090645 L1PA7 6471 + 1029 2446 16892 89 7 9 269 1 4 197 0 3 134 7 8 43 0 1 475 1 0 103 0 1 81 chain 196780 chr14 107043718 + 40103142 40105848 L1PA8A 6298 + 3787 6284 9818 91 1 2 84 173 1 165 0 1 8 3 0 186 0 1 369 1 0 128 1 2 246 4 3 351 33 4 60 2 6 68 0 1 11 1 2 188 0 1 212 3 0 190 12 1 115 chain 26323 chr14 107043718 + 40198657 40198949 L1PA2 6032 + 5740 6032 47235 292 chain 21828 chr14 107043718 + 40317486 40317818 THE1B 368 + 16 368 54068 160 19 16 6 0 3 10 1 5 12 4 12 56 0 7 7 1 2 56 chain 166279 chr14 107043718 + 40320662 40322685 L1PA7 6471 + 4435 6458 11319 105 4 0 80 2 1 29 1 2 16 0 4 278 10 9 646 0 1 187 1 0 505 12 13 147 chain 551263 chr14 107043718 + 40326207 40332209 L1PA2 6032 + 2 6019 655 383 0 1 2554 0 3 1570 0 10 127 0 1 1368 chain 543938 chr14 107043718 + 40348058 40354070 L1PA2 6032 + 0 6016 1090 257 1 0 311 0 4 298 3 0 48 1 0 11 1 2 1454 0 1 1174 2 1 721 0 3 585 0 1 1145 chain 120184 chr14 107043718 + 40358866 40360416 THE1B-int 1605 + 0 1599 15508 98 1 0 332 0 25 298 18 13 214 0 28 411 1 2 72 0 1 105 chain 136556 chr14 107043718 + 40380229 40381791 L1P1 4361 + 894 2459 13384 471 0 1 1003 0 2 88 chain 43712 chr14 107043718 + 40423973 40424457 L1PA3long 6157 + 5673 6157 32316 484 chain 9336 chr14 107043718 + 40424925 40425086 MLT2C1 407 + 46 208 71841 93 30 31 38 chain 17813 chr14 107043718 + 40464099 40464359 MER61C 433 + 172 432 58874 38 1 0 99 20 22 71 1 0 30 chain 49915 chr14 107043718 + 40544261 40544804 L1PA3long 6157 + 5606 6149 29596 543 chain 2902 chr14 107043718 + 40547498 40547529 L1MD2 1676 + 1623 1654 100827 31 chain 54229 chr14 107043718 + 40591870 40592538 L1PA7 6471 + 5807 6466 28141 59 0 1 28 2 0 380 12 6 17 0 1 160 3 0 7 chain 57270 chr14 107043718 + 40676648 40677391 L1PB1 5432 + 3938 4635 27168 18 2 0 241 42 1 430 3 0 7 chain 49622 chr14 107043718 + 40729983 40730514 L1HS 6032 + 4206 4737 29712 531 chain 10650 chr14 107043718 + 40777521 40777745 L1PB1 5432 + 5202 5404 69126 18 2 1 15 1 0 45 1 0 15 1 0 4 2 0 8 9 0 19 24 19 24 1 0 21 1 0 13 chain 112737 chr14 107043718 + 40824967 40826333 L1PA6 6164 + 4785 6159 16717 287 3 1 152 0 1 70 2 1 57 6 11 322 2 1 61 0 1 165 0 7 232 2 0 5 chain 70399 chr14 107043718 + 40835506 40836276 L1PA3long 6157 + 5387 6157 23893 770 chain 56580 chr14 107043718 + 40864357 40865096 MER4E1 777 + 0 770 27396 22 8 11 256 5 6 38 0 19 81 0 1 109 1 8 219 chain 63758 chr14 107043718 + 40992091 40992896 L1P3 4156 + 2907 3711 25462 585 0 1 33 2 1 15 1 0 25 3 0 11 0 3 130 chain 91664 chr14 107043718 + 41014767 41015904 L1PA7 6471 + 5228 6368 19381 111 0 3 280 0 2 535 2 0 209 chain 5126 chr14 107043718 + 41063985 41064061 MSTA 426 + 355 425 85036 11 0 1 7 7 0 51 chain 20110 chr14 107043718 + 41115664 41115907 L1PA7 6471 + 6217 6461 56249 104 1 2 138 chain 73707 chr14 107043718 + 41159376 41160216 L1PA5 6144 + 5245 6086 23166 645 1 2 194 chain 275178 chr14 107043718 + 41194373 41197408 L1PA3long 6157 + 3118 6152 7576 1523 1 0 1182 0 1 313 1 0 15 chain 118164 chr14 107043718 + 41310794 41312652 THE1A-int 1579 + 7 1574 15856 175 2 1 56 0 1 28 0 3 44 2 1 128 0 1 175 0 17 22 342 57 8 27 0 237 0 1 612 chain 26533 chr14 107043718 + 41312657 41313012 THE1A 353 + 0 353 46926 111 1 0 90 0 1 4 10 8 139 chain 183440 chr14 107043718 + 41337864 41339921 L1HS 6032 + 1129 3187 10416 713 0 1 1344 chain 28227 chr14 107043718 + 41358273 41358626 THE1A 353 + 2 353 44521 108 1 0 92 1 0 151 chain 64931 chr14 107043718 + 41395900 41396643 L1PA5 6144 + 5397 6139 25208 248 0 1 35 5 3 455 chain 47207 chr14 107043718 + 41415459 41416903 L1PB1 5432 + 4650 5424 30569 155 10 10 149 642 0 139 2 3 8 1 0 24 27 21 10 10 8 42 1 0 18 1 0 44 1 0 15 1 0 4 43 33 13 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 65476 chr14 107043718 + 41492217 41492921 L1PA3long 6157 + 5453 6157 25076 704 chain 288415 chr14 107043718 + 41493457 41497264 L1PA8 5853 + 2044 5853 7182 323 4 5 109 0 4 403 1 0 69 0 5 34 9 10 120 0 1 258 1 0 9 13 11 44 0 1 131 0 1 24 0 4 549 0 3 45 12 9 118 3 0 19 10 0 498 1 6 149 9 12 59 0 1 144 6 5 337 1 0 44 2 0 68 16 14 50 24 22 91 chain 39909 chr14 107043718 + 41515870 41516320 LTR7 482 + 0 482 34729 25 0 1 206 0 31 219 chain 324141 chr14 107043718 + 41516322 41520197 HERVH-int 3825 + 0 3825 6335 130 0 9 396 5 0 35 1 0 9 2 1 24 28 0 15 45 0 12 3 0 14 8 6 5 1 0 73 2 1 48 0 1 450 16 1 89 0 20 79 5 0 263 9 35 2090 0 1 18 chain 40070 chr14 107043718 + 41521430 41521881 LTR7 482 + 0 482 34609 246 0 31 205 chain 24793 chr14 107043718 + 41526751 41527097 L1PA8 5853 + 5217 5564 49598 106 9 10 231 chain 3904 chr14 107043718 + 41527098 41527142 L1PA8 5853 + 5564 5608 92095 44 chain 18546 chr14 107043718 + 41527144 41527393 L1PA8 5853 + 5608 5853 58051 71 1 0 13 1 0 48 2 1 19 2 1 92 chain 5526 chr14 107043718 + 41545490 41545553 L1PA8 5853 + 5790 5853 83127 63 chain 52708 chr14 107043718 + 41566515 41567107 L1PA4 6152 + 5546 6143 28665 189 0 1 360 0 4 43 chain 32054 chr14 107043718 + 41597730 41598087 HERV-Fc1_LTR2 425 + 34 391 40306 357 chain 9868 chr14 107043718 + 41623333 41623455 THE1D 372 + 246 368 70688 122 chain 21779 chr14 107043718 + 41653960 41654210 L1PA5 6144 + 5896 6142 54121 239 4 0 7 chain 3363 chr14 107043718 + 41667427 41667467 MER3 215 + 91 131 96442 40 chain 2598 chr14 107043718 + 41707730 41707800 MER58A 224 + 51 119 103005 25 30 28 15 chain 158445 chr14 107043718 + 41736592 41738504 L1PA7 6471 + 3548 5468 11846 50 0 1 217 0 1 114 8 7 563 0 1 172 0 4 152 4 3 124 0 3 508 chain 54889 chr14 107043718 + 41795134 41795755 L1PA5 6144 + 5341 5963 27908 365 0 1 256 chain 8478 chr14 107043718 + 41805648 41805738 L1PA3long 6157 + 5822 5912 73729 90 chain 12774 chr14 107043718 + 41854352 41854503 L1PA5 6144 + 5972 6126 65481 21 1 4 129 chain 10918 chr14 107043718 + 42011873 42012153 L1PB1 5432 + 5168 5424 68671 52 2 1 16 1 0 44 11 1 12 79 71 5 1 0 21 1 0 11 1 0 18 1 0 4 chain 233298 chr14 107043718 + 42051763 42054884 HERVL-int 5654 + 0 5654 8656 511 18 1336 15 15 24 46 6 7 132 0 9 19 0 15 170 1 2 566 0 1173 109 2 1 5 0 1 306 8 6 301 4 7 27 1 0 33 0 1 71 1 4 42 2 0 82 1 2 266 0 3 18 11 12 332 chain 31887 chr14 107043718 + 42054884 42055295 MLT2A1 477 + 0 461 40426 169 1 5 207 0 4 13 0 42 21 chain 29828 chr14 107043718 + 42096937 42097259 AluYb8 318 + 0 318 42208 126 4 0 192 chain 189468 chr14 107043718 + 42118831 42121663 L1PB1 5432 + 2465 5101 10143 33 2 0 21 0 1 261 0 1 57 1 0 65 21 0 12 0 2 68 50 43 75 0 1 93 4 0 7 1 10 49 1 2 322 0 1 9 0 4 126 3 5 308 8 11 428 9 14 14 0 4 97 9 14 38 0 1 142 4 11 86 208 0 200 chain 143022 chr14 107043718 + 42152733 42154314 L1PA3long 6157 + 3002 4585 12856 186 0 1 755 0 1 640 chain 42294 chr14 107043718 + 42235613 42236112 MER9a3 513 + 0 509 33194 307 1 5 138 0 6 53 chain 54235 chr14 107043718 + 42252998 42253633 L1PA7 6471 + 5818 6447 28137 320 0 1 168 8 1 139 chain 168980 chr14 107043718 + 42256004 42257901 L1PA4 6152 + 3965 5869 11156 83 0 1 559 0 14 759 8 0 488 chain 7577 chr14 107043718 + 42272189 42272278 THE1B-int 1605 + 216 306 75916 43 0 1 46 chain 28189 chr14 107043718 + 42291888 42292195 AluYk11 308 + 0 305 44580 132 2 0 173 chain 17058 chr14 107043718 + 42352698 42352906 L1PA7 6471 + 6240 6448 59746 208 chain 21146 chr14 107043718 + 42359744 42359986 L1PA5 6144 + 5902 6144 54953 242 chain 34280 chr14 107043718 + 42367310 42367690 L1PA2 6032 + 5639 6019 38506 380 chain 21886 chr14 107043718 + 42380276 42380559 L1PA7 6471 + 6152 6433 53988 155 17 17 8 2 0 101 chain 3244 chr14 107043718 + 42383124 42383163 HSMAR2 1300 + 1008 1047 97537 39 chain 53243 chr14 107043718 + 42397447 42398091 L1PA7 6471 + 5824 6469 28486 13 0 1 631 chain 117099 chr14 107043718 + 42404731 42406110 L1PA6 6164 + 4772 6162 16036 288 0 11 333 1 0 60 1 0 306 1 2 54 0 1 335 chain 101675 chr14 107043718 + 42426751 42427890 L1PA3long 6157 + 4024 5166 18105 336 0 4 231 1 0 571 chain 225056 chr14 107043718 + 42432812 42435609 L1PA7 6471 + 3643 6454 8888 180 9 6 123 0 17 25 0 1 124 0 1 262 0 1 64 2 1 351 0 1 184 10 11 354 6 0 264 0 3 689 12 11 138 chain 37436 chr14 107043718 + 42454402 42454964 MLT2A2 560 + 2 559 36452 181 16 15 84 35 35 14 2 1 195 3 0 32 chain 58215 chr14 107043718 + 42508103 42509030 L1PA14 3548 + 2384 3280 26896 22 12 5 41 0 1 84 10 9 27 0 2 95 1 8 11 2 1 248 20 15 47 2 0 5 6 9 100 32 27 8 22 0 72 1 0 59 chain 40801 chr14 107043718 + 42531813 42532329 L1PA6 6164 + 5645 6162 34093 47 0 1 137 1 2 321 1 0 9 chain 74254 chr14 107043718 + 42567812 42568645 L1PA5 6144 + 4219 5056 23015 130 0 4 703 chain 24887 chr14 107043718 + 42608496 42608791 AluYk4 311 + 0 296 49461 118 5 6 172 chain 5145 chr14 107043718 + 42675298 42675359 L1M1 2793 + 2215 2276 84928 61 chain 225151 chr14 107043718 + 42772165 42775216 L1PA7 6471 + 3406 6461 8884 37 0 4 29 6 10 342 39 34 227 4 5 38 0 1 139 10 19 26 0 2 62 1 0 4 0 1 5 1 2 168 5 4 253 5 6 4 1 0 51 1 2 9 0 1 4 1 0 89 0 1 442 6 5 93 0 1 21 1 2 21 27 28 24 3 0 17 4 2 229 17 0 269 1 0 133 0 1 28 0 1 5 10 16 29 1 0 109 chain 107681 chr14 107043718 + 42805780 42807102 HERVK22-int 3844 + 0 1325 17365 15 1 2 5 1 0 9 10 7 338 0 5 571 0 1 372 chain 101204 chr14 107043718 + 42830045 42831190 L1PA5 6144 + 4983 6132 18163 291 0 1 4 0 1 86 0 2 764 chain 10778 chr14 107043718 + 42875717 42875905 L1MA3 4352 + 4150 4328 68903 30 1 0 43 11 7 30 2 0 22 1 0 5 3 2 28 1 0 11 chain 55564 chr14 107043718 + 42882616 42883229 L1PA3long 6157 + 5544 6157 27699 613 chain 149200 chr14 107043718 + 42887760 42889560 L1PA7 6471 + 4676 6467 12406 309 1 0 506 23 7 125 0 7 4 0 1 832 chain 50908 chr14 107043718 + 42916071 42916763 L1PA8A 6298 + 5129 5801 29236 360 1 4 5 4 0 72 20 0 64 8 9 158 chain 4858 chr14 107043718 + 42939000 42939060 L1PB4 2604 + 2456 2516 86379 60 chain 63629 chr14 107043718 + 42998169 42998883 L1P1 4361 + 3616 4328 25494 534 1 0 155 1 0 23 chain 36916 chr14 107043718 + 43017122 43017537 L1PA4 6152 + 5727 6143 36799 90 0 1 325 chain 548142 chr14 107043718 + 43062334 43068359 L1PA2 6032 + 0 6028 852 3043 1 0 224 1 0 1911 0 1 328 0 1 187 0 1 147 0 1 66 0 1 117 chain 31981 chr14 107043718 + 43133577 43134012 MLT2A1 477 + 12 476 40359 157 4 1 215 17 49 42 chain 36070 chr14 107043718 + 43184396 43184970 LTR9B 643 + 0 583 37367 184 23 22 211 50 56 6 3 0 23 7 0 15 0 14 52 chain 109235 chr14 107043718 + 43193095 43194719 L1PA11 4918 + 2964 4578 17152 62 0 4 196 13 10 564 6 0 6 14 22 46 0 4 217 9 15 83 3 6 15 5 7 110 11 5 50 9 8 13 2 0 68 2 0 13 1 0 20 48 35 11 1 0 13 2 0 11 chain 5080 chr14 107043718 + 43205128 43205191 L1MCa 1829 + 601 662 85247 8 2 0 53 chain 85947 chr14 107043718 + 43231000 43232058 L1PA7 6471 + 4248 5306 20455 169 0 2 214 2 1 321 3 1 28 0 1 321 chain 24573 chr14 107043718 + 43237074 43237375 AluSc 308 + 6 308 49893 116 0 1 185 chain 63625 chr14 107043718 + 43245727 43246539 LTR12 884 + 0 884 25497 25 1 0 30 0 41 151 0 25 105 2 0 65 7 5 11 4 12 67 0 2 271 4 5 69 chain 365271 chr14 107043718 + 43253850 43257892 L1PA3long 6157 + 2114 6157 5731 3900 0 1 142 chain 533858 chr14 107043718 + 43262064 43268075 L1PA3long 6157 + 0 6156 1665 152 14 15 455 0 1 147 6 134 1883 0 4 619 1 4 940 0 4 283 2 0 557 0 1 107 0 1 205 0 3 308 0 1 332 chain 47723 chr14 107043718 + 43295248 43295781 L1PA4 6152 + 4822 5355 30385 533 chain 9556 chr14 107043718 + 43327257 43327750 LTR12C 1709 + 837 1655 71362 35 0 41 59 0 41 24 343 586 32 chain 28328 chr14 107043718 + 43343746 43344051 AluYa5 310 + 0 304 44372 132 1 0 172 chain 198255 chr14 107043718 + 43345127 43347405 L1PA5 6144 + 3853 6132 9765 30 0 2 185 0 1 777 2 1 445 1 0 838 chain 548746 chr14 107043718 + 43370269 43376295 L1PA2 6032 + 4 6032 823 252 1 0 29 2 1 20 4 5 175 1 0 472 0 3 2606 1 0 624 0 1 1498 1 2 340 chain 11758 chr14 107043718 + 43392744 43392875 L1P1 4361 + 4049 4179 67292 102 1 0 28 chain 74525 chr14 107043718 + 43405549 43406365 L1PA3long 6157 + 5338 6157 22955 677 0 3 139 chain 71059 chr14 107043718 + 43439556 43440466 L1P3 4156 + 3244 4139 23750 256 1 0 19 2 1 14 0 3 5 1 3 383 1 0 49 14 0 130 2 0 7 2 1 24 chain 15284 chr14 107043718 + 43449231 43449465 L1PA15 4387 + 3430 3664 61935 176 20 22 5 2 0 31 chain 25996 chr14 107043718 + 43469265 43469552 L1PA2 6032 + 5730 6024 47723 143 0 7 144 chain 29152 chr14 107043718 + 43489220 43489551 L1PA5 6144 + 5812 6144 43117 184 0 1 147 chain 547173 chr14 107043718 + 43492185 43498201 L1PA2 6032 + 8 6029 912 64 1 2 668 1 0 569 0 1 767 0 4 181 0 4 306 5 0 817 0 1 2637 chain 52342 chr14 107043718 + 43532689 43535279 LTR30 714 + 0 714 28777 132 1879 0 61 0 5 55 0 5 247 8 7 116 3 5 32 16 8 41 chain 5828 chr14 107043718 + 43533503 43533618 LTR12C 1709 + 773 1135 73654 49 41 0 8 0 288 17 chain 18280 chr14 107043718 + 43533618 43534700 LTR12C 1709 + 650 1709 58385 63 47 124 23 0 2 47 27 23 46 0 41 18 735 596 76 chain 34202 chr14 107043718 + 43535947 43536923 HERV30-int 1034 + 147 785 38562 13 7 1 39 2 1 37 14 10 8 20 0 5 13 0 51 1 0 3 4 0 38 15 5 74 2 1 88 20 5 30 40 6 19 8 5 6 2 0 33 194 61 49 39 0 24 52 0 26 chain 49414 chr14 107043718 + 43538788 43539409 LTR30 714 + 7 653 29798 33 0 14 159 0 8 32 0 5 196 2 0 118 8 10 51 3 1 19 chain 43044 chr14 107043718 + 43576490 43577032 MER41A 554 + 13 554 32748 246 8 7 288 chain 128293 chr14 107043718 + 43581158 43582988 MER41-int 2638 + 785 2632 14244 23 0 14 36 14 7 9 1 3 131 12 13 19 8 1 9 0 1 268 0 1 238 1 2 135 1 0 87 3 1 73 20 19 34 2 0 271 6 7 39 13 15 177 4 1 14 1 0 151 15 33 15 chain 38122 chr14 107043718 + 43583018 43583543 MER41A 554 + 17 554 35971 179 6 0 7 12 18 185 1 5 12 0 8 123 chain 497906 chr14 107043718 + 43597900 43603401 L1PA2 6032 + 0 6030 3207 71 1 2 183 1 0 395 2 15 2892 0 1 639 0 515 1317 chain 26186 chr14 107043718 + 43606289 43606642 L1PA8 5853 + 5506 5853 47450 29 1 2 27 1 0 44 2 0 71 1 0 14 1 0 47 2 1 19 1 0 93 chain 348506 chr14 107043718 + 43652213 43656936 L1PB1 5432 + 406 5103 5927 139 1 2 55 1 0 160 0 2 94 8 0 126 2 0 81 20 24 28 10 18 98 1 3 173 18 1 209 1 0 632 4 5 238 6 0 37 0 1 128 2 4 32 1 0 300 0 5 364 0 1 260 0 3 100 2 4 195 1 2 30 2 1 65 25 1 137 0 4 111 2 4 222 0 1 43 1 0 35 1 0 44 3 0 80 1 0 191 0 2 94 2 1 5 0 1 31 34 33 37 chain 20295 chr14 107043718 + 43678244 43678534 MER2 342 + 38 322 56020 27 5 7 8 3 0 37 0 1 57 6 0 147 chain 533875 chr14 107043718 + 43698653 43704666 L1PA3long 6157 + 9 6157 1663 142 1 2 211 0 1 403 8 136 1303 0 2 508 0 1 1085 0 2 505 0 1 330 1 0 1045 3 0 181 0 3 287 chain 46571 chr14 107043718 + 43737507 43738057 L1PA7 6471 + 5911 6460 30818 173 1 0 376 chain 149605 chr14 107043718 + 43805096 43807184 L1PBa1 4058 + 1958 4040 12380 244 6 10 4 1 0 89 0 1 115 0 1 22 0 1 7 13 22 173 7 9 62 0 1 42 1 0 4 0 1 669 1 0 116 9 0 23 0 4 87 1 0 7 1 0 29 1 0 14 7 8 21 2 0 41 0 4 61 3 1 17 1 0 8 4 0 7 3 0 12 3 1 18 2 1 4 1 0 23 1 0 11 9 10 9 2 0 9 1 0 17 1 0 42 chain 11655 chr14 107043718 + 43877093 43877362 MER44A 345 + 0 300 67472 16 56 94 67 10 14 41 4 0 13 1 0 8 1 0 7 5 0 40 chain 3974 chr14 107043718 + 43887700 43887746 MADE1 96 + 0 46 91614 46 chain 63885 chr14 107043718 + 43905594 43906406 L1PA8 5853 + 5046 5852 25433 182 0 1 7 9 8 320 1 0 35 0 1 8 2 0 71 1 0 9 1 0 55 1 0 17 1 0 92 chain 34948 chr14 107043718 + 43996170 43996588 L1PA7 6471 + 6049 6469 38058 44 0 1 226 3 4 145 chain 23743 chr14 107043718 + 44014232 44014518 THE1B-int 1605 + 1311 1598 51211 160 0 1 126 chain 26210 chr14 107043718 + 44022977 44023286 L1P3 4156 + 1459 1768 47400 309 chain 229191 chr14 107043718 + 44024502 44027059 L1PA4 6152 + 3414 5972 8771 1886 0 1 671 chain 148834 chr14 107043718 + 44046828 44048658 L1PA7 6471 + 4634 6466 12430 321 1 0 213 0 3 448 7 6 85 1 0 420 1 2 168 8 9 157 chain 95394 chr14 107043718 + 44083260 44084350 L1PA5 6144 + 5051 6140 18856 332 1 0 757 chain 7762 chr14 107043718 + 44108498 44108639 MSTA-int 1630 + 0 141 75460 75 5 15 12 16 6 33 chain 168914 chr14 107043718 + 44158439 44160277 L1PA2 6032 + 4189 6029 11159 40 0 4 399 2 0 1397 chain 259587 chr14 107043718 + 44208348 44211312 L1PA5 6144 + 3187 6144 7984 1263 0 1 1206 9 1 323 16 16 147 chain 61244 chr14 107043718 + 44213013 44213689 L1PA4 6152 + 5292 5968 26052 448 0 1 151 1 0 76 chain 5241 chr14 107043718 + 44217872 44217943 L1M1 2793 + 2587 2657 80078 41 1 0 29 chain 30016 chr14 107043718 + 44217943 44218479 L1PA15 4387 + 3851 4366 42036 37 14 12 32 1 0 41 1 0 29 1 0 17 13 14 71 1 0 27 1 0 54 1 0 20 3 1 10 5 4 47 7 4 43 3 1 12 10 5 24 1 0 10 chain 31518 chr14 107043718 + 44240579 44240937 L1PA4 6152 + 5793 6151 40724 358 chain 9873 chr14 107043718 + 44262226 44262352 L1MA4 2864 + 2526 2652 70675 126 chain 83731 chr14 107043718 + 44266214 44267201 L1PA7 6471 + 5256 6247 20865 104 1 2 259 0 3 623 chain 295248 chr14 107043718 + 44310922 44314260 L1PA4 6152 + 2008 5347 6974 244 0 2 1435 1 0 1658 chain 326299 chr14 107043718 + 44321590 44325180 L1PA3long 6157 + 2567 6157 6279 3590 chain 116256 chr14 107043718 + 44384559 44385957 LTR12C 1709 + 0 1709 16176 283 9 0 10 0 9 302 0 1 52 0 277 131 7 9 38 8 6 106 0 4 111 0 29 72 0 1 110 1 0 158 chain 117857 chr14 107043718 + 44416791 44418296 HERVK22-int 3844 + 5 2062 15909 38 3 0 307 0 15 27 1 0 325 1 518 312 1 2 38 0 23 70 11 12 307 1 0 63 chain 34913 chr14 107043718 + 44428519 44428999 LTR19A 502 + 0 482 38084 167 0 2 22 1 2 39 11 10 17 0 1 49 3 4 29 3 1 139 chain 49107 chr14 107043718 + 44432881 44433539 PABL_A 660 + 1 660 29903 267 1 0 10 1 2 60 5 4 161 0 3 71 11 10 71 chain 98340 chr14 107043718 + 44541505 44542654 L1PA6 6164 + 5005 6154 18507 466 1 0 532 7 0 6 2 10 135 chain 15380 chr14 107043718 + 44573804 44574153 L1PB1 5432 + 5114 5430 61812 24 1 0 5 1 0 13 19 13 51 2 1 15 1 0 45 1 0 15 3 0 8 16 7 15 3 1 5 1 0 14 7 5 19 1 0 23 1 0 6 9 8 9 1 0 9 1 0 5 chain 224287 chr14 107043718 + 44580267 44583391 L1PA7 6471 + 1964 6461 8918 157 7 1 76 0 1 5 0 7 291 309 0 137 8 6 353 5 1680 183 0 3 85 1 0 247 7 4 421 1 0 422 0 2 24 0 3 152 0 3 214 1 2 18 chain 51234 chr14 107043718 + 44584977 44585536 L1PA2 6032 + 4516 5075 29152 559 chain 125274 chr14 107043718 + 44600799 44602234 SVA_C 1631 + 0 1617 14659 18 0 17 122 0 39 416 0 37 112 0 1 85 1 89 19 1 0 47 1 2 613 chain 46026 chr14 107043718 + 44633558 44634072 L1PA3long 6157 + 5628 6142 31050 514 chain 37384 chr14 107043718 + 44664846 44665348 MLT2A2 560 + 0 512 36490 168 13 12 219 3 14 99 chain 441331 chr14 107043718 + 44666042 44671724 HERVL-int 5654 + 2 5654 4550 261 1 2 52 6 5 272 1 0 50 7 5 221 0 5 43 25 24 314 1 0 175 9 10 633 9 0 6 0 9 240 5 19 957 0 2 169 6 7 23 1 0 63 7 24 483 2 1 3 0 1 242 0 4 186 142 71 412 38 38 400 1 4 216 chain 4135 chr14 107043718 + 44670585 44670636 HERVL-int 5654 + 3777 3828 90546 51 chain 207701 chr14 107043718 + 44674602 44676892 L1PA3long 6157 + 3867 6157 9432 2048 1 0 92 0 1 149 chain 138108 chr14 107043718 + 44682782 44685058 L1PA4 6152 + 3881 6151 13258 470 5 0 308 1 0 1492 chain 419656 chr14 107043718 + 44693522 44699094 L1PA7 6471 + 904 6465 4880 349 0 19 37 0 1 1331 13 6 693 3 5 192 0 3 697 0 1 42 0 1 37 0 2 62 13 14 224 0 1 31 325 0 16 0 4 313 22 13 304 0 201 136 4 99 114 8 9 122 19 19 457 2 0 6 chain 120219 chr14 107043718 + 44721577 44723143 THE1B-int 1605 + 0 1605 15497 15 0 2 96 10 13 277 0 1 22 0 25 217 45 47 648 0 1 155 0 5 81 chain 140397 chr14 107043718 + 44746499 44748665 L1MA2 4263 + 1933 4114 13069 16 25 28 34 0 1 4 46 46 54 4 8 15 1 0 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15 189 3 1 174 17 9 8 1 0 124 0 1 376 4 6 99 4 0 314 17 15 40 4 1 18 0 9 7 chain 5617 chr14 107043718 + 44835085 44835155 THE1B 368 + 273 345 82722 65 0 2 5 chain 4481 chr14 107043718 + 44842267 44842316 MLT2B2 565 + 516 565 88442 49 chain 444186 chr14 107043718 + 44854402 44859572 L1PA5 6144 + 968 6142 4491 200 9 1 482 0 1 18 0 2 141 10 15 551 0 4 179 0 4 610 3 0 173 2 0 622 11 6 363 1 5 1122 0 1 448 0 1 225 chain 3231 chr14 107043718 + 44869416 44869453 LTR52 417 + 346 383 97656 37 chain 17148 chr14 107043718 + 44880042 44880276 L1MA3 4352 + 52 291 59635 104 1 0 19 1 0 6 6 13 97 chain 25132 chr14 107043718 + 44894159 44894471 AluYk4 311 + 0 311 49070 64 2 0 62 0 1 184 chain 3107 chr14 107043718 + 44907152 44907186 MIRc 230 + 142 176 98718 34 chain 6721 chr14 107043718 + 44930565 44930737 Tigger4a 237 + 45 221 78568 26 3 60 9 57 0 31 2 6 44 chain 19493 chr14 107043718 + 44987286 44987510 L1PA5 6144 + 5163 5388 57041 46 0 1 178 chain 67907 chr14 107043718 + 44987510 44988260 L1PA5 6144 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416 1 0 46 1 0 38 1 0 4 chain 42046 chr14 107043718 + 48720821 48721603 L1PA15 4387 + 3578 4327 33329 71 1 0 8 3 0 11 40 4 15 0 28 65 0 1 29 2 0 20 11 6 52 3 1 10 19 15 19 1 0 74 1 0 97 2 1 13 17 21 46 1 0 22 3 0 9 2 1 32 24 21 44 3 1 12 chain 66187 chr14 107043718 + 48746316 48747112 LTR17 781 + 0 781 24912 299 10 0 28 0 1 406 0 1 37 7 0 9 chain 3474 chr14 107043718 + 48760009 48760050 L1PB1 5432 + 5236 5277 95420 41 chain 2225 chr14 107043718 + 48760163 48760195 L1PB1 5432 + 5370 5401 105178 23 1 0 8 chain 37922 chr14 107043718 + 48765394 48765989 L1MA2 4263 + 1926 2523 36122 43 1 2 39 2 0 67 6 5 90 1 4 40 71 72 235 chain 498682 chr14 107043718 + 48792164 48798879 L1PA7 6471 + 0 6469 3172 244 0 10 62 24 13 74 0 1 191 7 5 152 1 0 99 1 0 616 16 12 193 23 27 70 1 5 196 3 4 60 0 1 601 1 2 540 0 1 229 15 13 82 1 0 26 16 19 33 0 1 253 0 1 294 0 1 4 6 5 494 0 1 33 0 4 156 2 0 36 271 5 80 1 0 215 1 0 415 1 2 18 0 4 19 0 7 43 6 7 20 4 3 434 0 1 178 0 1 6 1 0 147 chain 21520 chr14 107043718 + 48797029 48797278 L1PA5 6144 + 5896 6144 54480 230 1 0 18 chain 2989 chr14 107043718 + 48905752 48905785 L1MC1 2226 + 1994 2027 99956 33 chain 13122 chr14 107043718 + 48909888 48910078 L1PA8 5853 + 5663 5849 64891 16 2 1 7 2 1 56 1 0 16 2 1 88 chain 4794 chr14 107043718 + 48927481 48927551 L1PA7 6471 + 5736 5807 86730 66 0 1 4 chain 54735 chr14 107043718 + 48927552 48928212 L1PA7 6471 + 5807 6466 27959 330 1 0 329 chain 25082 chr14 107043718 + 48941962 48942362 THE1D 372 + 0 372 49147 15 0 2 34 18 9 15 19 0 100 1 0 6 31 30 161 chain 120266 chr14 107043718 + 49026257 49027815 THE1B-int 1605 + 0 1600 15489 33 11 12 193 0 1 191 0 25 280 26 24 649 0 2 102 0 15 73 chain 437191 chr14 107043718 + 49062511 49067922 L1PA7 6471 + 1055 6464 4614 358 6 1 325 0 1 288 2 1 19 15 15 79 1 2 160 14 15 52 34 10 104 0 1 78 1 3 63 1 4 598 0 1 143 4 0 14 1 0 4 0 1 278 0 1 146 21 9 126 0 1 772 0 1 44 0 8 174 0 1 228 0 1 5 2 1 111 0 1 317 2 1 82 0 1 160 0 14 35 0 6 532 0 1 12 chain 109281 chr14 107043718 + 49071177 49073373 L1M1 2793 + 522 2682 17143 20 14 11 8 3 0 9 1 0 9 163 88 35 122 132 5 1 0 54 29 27 83 1 0 31 0 2 144 1 0 71 8 4 15 29 21 24 0 1 160 1 4 189 2 3 169 5 4 66 25 33 63 80 100 82 10 52 12 45 1 36 0 5 6 10 5 46 1 0 79 32 27 32 21 49 42 0 1 46 1 0 45 1 0 9 chain 3794 chr14 107043718 + 49087712 49087754 5S 121 + 0 42 92891 42 chain 75448 chr14 107043718 + 49093645 49094468 L1PA3long 6157 + 5333 6156 22732 823 chain 556851 chr14 107043718 + 49096714 49102732 L1PA2 6032 + 11 6029 306 6018 chain 441534 chr14 107043718 + 49178179 49183803 L1PA7 6471 + 3 6464 4544 409 1 0 728 0 8 201 8 7 576 3 7 147 0 1 281 3 794 173 0 1 9 8 0 7 5 12 133 1 0 26 0 6 45 5 8 30 1 0 294 0 1 24 6 8 70 1 0 16 7 10 12 2 1 298 29 16 78 0 2 289 5 27 860 17 16 57 0 4 582 0 1 118 6 15 53 chain 6396 chr14 107043718 + 49195119 49195197 MLT1A 405 + 311 389 79687 78 chain 4304 chr14 107043718 + 49196542 49196597 MLT1K 546 + 490 544 89473 19 1 0 35 chain 71442 chr14 107043718 + 49246004 49246889 L1P3 4156 + 3256 4139 23665 238 1 0 332 0 1 24 0 1 253 4 2 6 1 0 26 chain 25948 chr14 107043718 + 49267693 49268069 THE1C 375 + 1 375 47798 184 26 28 11 1 0 4 1 2 26 4 0 119 chain 11023 chr14 107043718 + 49269251 49269384 THE1C-int 1605 - 1210 1349 68522 62 0 6 71 chain 11559 chr14 107043718 + 49270101 49270240 THE1C-int 1605 + 1460 1600 67644 132 0 1 7 chain 26076 chr14 107043718 + 49270245 49270616 THE1C 375 + 0 373 47613 104 5 6 15 3 0 59 16 20 169 chain 3992 chr14 107043718 + 49277140 49277192 MER5B 177 + 0 51 91505 45 1 0 6 chain 518104 chr14 107043718 + 49356598 49362737 L1PA6 6164 + 0 6162 2361 236 0 1 12 10 11 307 1 0 220 0 17 755 0 1 433 1 0 524 0 1 4 3 2 332 4 5 222 1 0 4 0 1 136 0 3 476 3 1 250 0 1 687 2 1 164 2 0 513 0 4 219 0 1 618 chain 338674 chr14 107043718 + 49385422 49390729 L1PA8 5853 + 1621 5846 6095 49 4 14 191 1 0 25 0 4 772 3 4 99 5 1 108 2 0 173 2 1 342 0 5 698 0 2 261 2 0 200 0 1 25 1 2 74 0 1 43 13 14 17 2 1 261 0 2 83 1 0 146 1099 8 316 2 1 45 2 0 69 1 0 21 2 1 39 3 2 18 1 0 86 chain 47401 chr14 107043718 + 49391105 49391841 L1PA15 4387 + 126 830 30507 75 10 11 67 36 0 18 8 22 303 49 38 170 chain 285480 chr14 107043718 + 49392925 49396452 L1PA7 6471 + 0 6470 7272 121 0 2332 493 0 1 537 3 2 17 2 0 19 1 2 484 1 0 4 7 9 727 0 1 384 0 597 103 0 10 201 0 1 86 0 1 38 0 1 299 chain 3742 chr14 107043718 + 49401611 49401735 MER33 330 + 26 179 93315 19 63 92 42 chain 14461 chr14 107043718 + 49517790 49518074 L1PB1 5432 + 5152 5408 62951 6 4 0 11 2 0 51 2 1 16 1 0 44 19 15 17 9 1 11 2 0 7 1 0 14 2 0 24 1 0 22 1 0 12 1 0 4 chain 191466 chr14 107043718 + 49528992 49532680 L1MA2 4263 + 1384 4111 10047 10 1 4 144 15 11 45 1 2 225 0 1 140 28 27 19 1 0 52 655 0 37 0 1 281 0 2 48 4 0 61 314 9 53 2 0 66 7 8 11 6 5 109 21 23 130 5 6 160 0 1 81 11 13 59 8 28 289 0 1 20 1 0 18 9 4 74 1 0 98 4 0 36 13 10 152 9 7 93 7 0 47 1 0 6 chain 166987 chr14 107043718 + 49534251 49536078 L1PA3long 6157 + 4329 6157 11271 1823 0 1 4 chain 24137 chr14 107043718 + 49561532 49561883 THE1B 368 + 0 368 50592 41 1 16 115 3 2 33 20 21 67 2 0 6 0 4 63 chain 26486 chr14 107043718 + 49586586 49586878 7SLRNA 320 + 7 299 46998 292 chain 6860 chr14 107043718 + 49648604 49648726 MER20 218 + 35 161 78102 15 1 0 15 23 28 68 chain 14858 chr14 107043718 + 49659929 49660129 Tigger3b 1229 + 778 981 62451 30 6 8 130 0 1 34 chain 22388 chr14 107043718 + 49776953 49777390 L1PB1 5432 + 5024 5423 53292 11 1 0 60 25 21 20 1 0 6 3 2 12 2 0 3 2 0 9 2 0 51 3 2 15 1 0 45 1 0 15 25 12 18 3 1 5 1 0 14 2 0 24 1 0 23 1 0 11 1 0 14 1 0 5 chain 22594 chr14 107043718 + 49816352 49816658 MER11A 1151 + 788 1129 52996 15 1 0 16 6 40 84 1 0 27 1 2 85 0 2 70 chain 142374 chr14 107043718 + 49820619 49822304 SVA_D 2077 + 16 2077 12903 9 1 0 4 1 0 8 0 22 280 8 241 181 0 40 107 2 0 12 1 0 27 11 0 46 1 0 44 0 1 65 0 78 207 0 1 4 9 8 158 2 1 363 0 20 134 chain 11373 chr14 107043718 + 49884685 49884820 LTR23 429 + 134 269 67964 135 chain 4181 chr14 107043718 + 49935474 49935523 MIR 256 + 87 136 90254 49 chain 27908 chr14 107043718 + 49936322 49936680 THE1B 368 + 0 368 45018 38 2 17 113 4 0 126 1 0 74 chain 116673 chr14 107043718 + 49936680 49938547 THE1B-int 1605 + 0 1600 16105 25 3 0 5 12 15 385 1 26 67 1 0 47 13 10 62 1 2 119 1 0 31 0 1 54 1 16 358 0 1 263 310 0 30 1 6 77 chain 8388 chr14 107043718 + 49939374 49939474 THE1B 368 + 193 293 73928 100 chain 6367 chr14 107043718 + 49939475 49939550 THE1B 368 + 293 368 79787 75 chain 27907 chr14 107043718 + 49943023 49943376 THE1B 368 + 2 368 45023 42 0 15 15 0 1 94 1 0 23 2 0 176 chain 26069 chr14 107043718 + 50046356 50046739 LTR7 482 + 0 476 47625 101 15 14 14 1 52 19 1 11 13 5 37 46 0 1 168 chain 5833 chr14 107043718 + 50050035 50050107 MER5A1 166 + 33 105 81774 72 chain 17814 chr14 107043718 + 50068573 50068812 7SK 245 + 7 242 58871 121 11 11 39 4 0 64 chain 37342 chr14 107043718 + 50072941 50073419 L1P1 4361 + 615 1102 36519 303 3 11 35 0 1 4 9 8 58 0 2 4 1 0 61 chain 86704 chr14 107043718 + 50073988 50074932 SVA_F 1814 + 335 1814 20273 372 0 536 561 1 0 10 chain 452937 chr14 107043718 + 50074940 50079981 L1PA5 6144 + 1083 6125 4305 699 4 0 412 0 4 1177 0 1 2749 chain 8471 chr14 107043718 + 50086981 50087080 HY3 101 + 0 99 73746 99 chain 9692 chr14 107043718 + 50215633 50215738 L1PA2 6032 + 5927 6032 71067 105 chain 125693 chr14 107043718 + 50252014 50253888 L1MA2 4263 + 9 4105 14601 13 1 0 76 0 1 12 8 9 37 7 5 7 4 0 11 1 6 56 5 9 12 7 8 8 5 0 32 1 0 22 1 0 117 11 10 22 1 0 137 14 5 171 0 4 359 6 2252 164 1 0 10 7 3 75 1 0 130 21 18 69 0 3 70 4 3 9 2 1 93 7 0 47 chain 9917 chr14 107043718 + 50288746 50288950 LTR54 533 + 323 533 70581 101 74 80 29 chain 22913 chr14 107043718 + 50292438 50292709 AluSp 311 + 14 286 52490 242 0 1 29 chain 25385 chr14 107043718 + 50314105 50314465 THE1B 368 + 0 368 48643 47 7 9 116 2 1 4 1 0 129 9 17 45 chain 7050 chr14 107043718 + 50342481 50342630 MER53 195 - 14 170 77440 43 0 3 10 33 35 14 7 9 42 chain 108560 chr14 107043718 + 50361772 50363283 LTR12C 1709 + 0 1708 17244 205 1 29 39 21 23 42 0 43 83 14 0 25 0 1 113 6 7 40 0 119 68 7 6 134 0 41 91 12 9 90 24 0 16 11 4 160 0 10 181 0 2 46 1 0 81 chain 40403 chr14 107043718 + 50365636 50366146 MLT2A2 560 + 0 560 34381 190 6 22 102 0 1 87 0 32 55 0 1 70 chain 15921 chr14 107043718 + 50374878 50375095 L1PA8 5853 + 5632 5845 61127 50 1 0 15 1 0 39 6 5 19 1 0 85 chain 42965 chr14 107043718 + 50508224 50508723 L1PA5 6144 + 5641 6141 32795 169 0 1 330 chain 47946 chr14 107043718 + 50508723 50509281 L1PA6 6164 + 5497 6054 30316 335 1 0 222 chain 24571 chr14 107043718 + 50535799 50536153 THE1B 368 + 0 368 49900 44 0 15 36 0 1 76 1 0 23 2 0 20 10 11 39 4 5 23 1 0 75 chain 120335 chr14 107043718 + 50536497 50538028 THE1B-int 1605 + 45 1600 15474 146 1 2 52 0 1 180 5 30 691 9 6 17 0 1 300 1 0 129 chain 17620 chr14 107043718 + 50542198 50542459 L1PA8 5853 + 5608 5853 59103 74 2 0 5 13 1 51 6 5 16 2 1 92 chain 212008 chr14 107043718 + 50550643 50553738 L1PB2 3958 + 816 3838 9283 213 0 3 109 0 12 26 0 4 25 0 1 21 1 0 26 11 12 239 0 1 360 0 1 82 31 43 48 0 1 296 1 4 142 10 0 65 0 3 162 1 3 56 0 1 149 16 15 85 0 3 194 273 171 45 3 1 13 3 0 20 0 4 70 1 0 72 1 0 64 1 0 73 2 0 21 1 0 63 chain 18685 chr14 107043718 + 50642267 50642517 AluSp 311 + 61 310 57912 71 19 18 160 chain 2992 chr14 107043718 + 50675984 50676015 LTR32 486 + 333 364 99940 31 chain 3075 chr14 107043718 + 50781762 50781798 MIR 256 + 195 231 99024 36 chain 62762 chr14 107043718 + 50814574 50815367 L1PA11 4918 + 3703 4489 25693 54 1 2 569 5 0 65 2 1 71 11 9 15 chain 38222 chr14 107043718 + 50893161 50893610 LTR7 482 + 0 482 35895 221 1 2 42 0 31 11 0 1 174 chain 223273 chr14 107043718 + 50893612 50896276 HERVH-int 3825 + 0 2675 8950 532 5 0 38 1 0 10 1 0 4 9 5 14 83 73 20 2 1 66 0 2 13 0 3 171 0 1 732 4 31 959 chain 12172 chr14 107043718 + 50896391 50896529 LTR7 482 + 0 138 66524 138 chain 18871 chr14 107043718 + 50896660 50896880 LTR7 482 + 261 482 57681 44 0 1 176 chain 36677 chr14 107043718 + 50917948 50918451 L1PB2 3958 + 3330 3818 36967 33 1 0 31 0 1 40 5 3 12 5 1 94 1 0 50 1 0 23 1 0 63 1 0 68 4 0 26 1 0 43 chain 16877 chr14 107043718 + 50937976 50938604 MER41B 635 + 1 612 59934 125 2 3 36 372 350 41 13 17 39 chain 131054 chr14 107043718 + 50949424 50950862 L1PA3long 6157 + 4697 6156 13921 671 0 21 767 chain 27552 chr14 107043718 + 50952719 50953167 LTR7B 505 + 0 491 45509 105 0 10 33 13 13 14 0 38 12 34 27 26 0 2 39 1 2 41 1 0 79 14 13 22 0 1 14 chain 19098 chr14 107043718 + 50967842 50968158 LTR73 568 + 9 326 57445 32 17 22 144 0 19 13 19 0 34 4 0 53 chain 17594 chr14 107043718 + 50970374 50970583 AluSp 311 + 85 294 59129 209 chain 20980 chr14 107043718 + 51016221 51016472 MER1B 344 + 0 276 55150 86 0 25 165 chain 20123 chr14 107043718 + 51050199 51050553 THE1B 368 + 0 368 56230 55 0 9 47 5 6 52 39 36 4 1 0 4 0 1 10 10 18 64 7 6 56 chain 42734 chr14 107043718 + 51111303 51111862 L1PA8 5853 + 5305 5853 32928 93 7 0 166 1 0 46 2 0 70 17 15 45 2 1 19 1 0 18 0 3 72 chain 2985 chr14 107043718 + 51129936 51129973 MLT1E1A 663 + 625 663 100012 21 0 1 16 chain 455920 chr14 107043718 + 51131552 51137892 L1PA8A 6298 + 555 6291 4239 451 6 7 80 0 4 20 1 4 11 12 0 10 1 0 6 0 1 35 43 42 130 6 7 344 9 10 67 0 1 247 0 4 474 312 0 67 0 1 86 0 5 33 0 2 40 0 2 140 1 2 77 0 4 423 308 0 6 0 4 176 0 3 117 18 0 173 0 1 198 0 1 19 0 1 193 1 0 45 1 2 143 0 2 669 0 1 343 1 2 35 0 2 52 8 1 566 0 5 27 6 0 6 0 6 69 0 3 28 chain 188642 chr14 107043718 + 51151748 51153809 L1PA3long 6157 + 4092 6157 10182 1218 0 4 843 chain 2856 chr14 107043718 + 51175895 51175925 MLT2B2 565 + 529 559 101196 30 chain 18208 chr14 107043718 + 51304387 51304727 THE1B 368 + 0 368 58454 36 10 4 68 11 9 60 64 100 91 chain 13321 chr14 107043718 + 51347740 51348015 MSTA 426 + 0 408 64586 56 13 12 30 52 167 5 3 0 22 3 25 91 chain 55758 chr14 107043718 + 51366620 51367218 SVA_A 1864 + 1266 1864 27644 598 chain 238609 chr14 107043718 + 51373848 51376815 HERVL-int 5654 + 830 3790 8504 38 2 0 485 5 11 6 6 0 19 0 3 40 0 2 261 0 1 179 0 1 269 8 0 398 0 1 104 0 2 312 13 7 176 3 2 162 5 4 72 0 1 404 chain 22802 chr14 107043718 + 51402313 51402628 THE1B 368 + 2 337 52659 11 2 0 23 0 22 13 5 6 95 2 1 164 chain 6941 chr14 107043718 + 51486980 51487066 MER5A 189 + 25 111 77807 86 chain 20157 chr14 107043718 + 51511618 51511880 L1PA7 6471 + 6200 6464 56183 104 15 17 143 chain 15325 chr14 107043718 + 51514307 51514512 L1PA8 5853 + 5652 5853 61878 26 2 1 15 2 1 48 1 0 17 2 1 92 chain 31119 chr14 107043718 + 51599199 51599652 L1PA16 3655 + 2451 2903 41043 164 27 27 29 18 17 215 chain 22825 chr14 107043718 + 51631949 51632314 THE1C 375 + 0 375 52623 91 44 48 31 0 12 11 11 5 177 chain 7241 chr14 107043718 + 51662269 51662380 L1PA13 3608 + 3335 3440 76835 27 1 0 29 10 5 44 chain 5918 chr14 107043718 + 51724139 51724209 U6 107 + 37 107 81404 70 chain 337900 chr14 107043718 + 51748586 51752556 HERVE-int 4064 + 0 4064 6111 287 7 0 526 4 1 721 0 1 565 5 4 407 3 1 228 0 113 175 7 4 372 2 0 72 1 0 123 2 1 463 chain 10572 chr14 107043718 + 51784579 51784715 HSMAR1 1287 + 9 149 69285 62 0 4 74 chain 79105 chr14 107043718 + 51802576 51803542 L1PA6 6164 + 5216 6156 21838 415 27 12 12 1 0 5 12 0 194 0 1 155 0 1 145 chain 23267 chr14 107043718 + 51905656 51906021 THE1C 375 + 0 375 51978 87 3 4 36 26 26 27 0 1 4 7 6 110 0 10 39 1 0 25 chain 21374 chr14 107043718 + 51945157 51945672 L1MB3 1562 + 1056 1552 54673 36 0 1 23 73 79 6 1 0 77 12 14 50 12 11 66 47 23 26 1 0 37 33 32 15 chain 20721 chr14 107043718 + 51986787 51987059 L1PA16 3655 + 3270 3537 55468 18 2 0 144 3 0 105 chain 120782 chr14 107043718 + 52122059 52123489 LTR12C 1709 + 0 1709 15381 192 1 0 239 1 0 60 0 1 81 6 5 85 0 278 171 1 0 112 0 4 481 chain 17673 chr14 107043718 + 52127745 52127963 MER57A1 433 + 0 222 59040 86 1 5 131 chain 44738 chr14 107043718 + 52134075 52134842 L1PA13 3608 + 2791 3548 31729 174 8 10 11 0 1 90 5 17 38 3 2 25 1 0 25 0 3 86 4 3 16 3 4 40 1 0 56 7 4 43 105 86 11 3 0 12 chain 225718 chr14 107043718 + 52136149 52140284 L1PA5 6144 + 0 5877 8866 473 7 6 23 0 1 328 0 907 202 1481 2310 94 0 4 956 0 1 505 0 1 66 chain 10258 chr14 107043718 + 52147386 52147542 L1PA11 4918 + 4354 4504 69883 41 2 1 11 2 0 67 2 0 13 2 1 16 chain 508464 chr14 107043718 + 52157774 52163834 L1PA6 6164 + 0 6162 2822 903 0 5 847 1 2 437 0 2 112 0 3 14 29 0 98 0 1 164 0 3 131 0 1 181 6 18 26 16 3 238 0 1 513 1 0 64 0 99 33 5 7 452 0 4 106 0 3 104 5 6 172 0 5 1266 0 4 126 2 0 8 chain 40520 chr14 107043718 + 52164598 52165098 MER9a3 513 + 0 508 34297 18 0 2 91 0 1 8 0 2 292 0 2 18 3 4 70 chain 383024 chr14 107043718 + 52165663 52172109 HERVK9-int 4720 + 145 4720 5426 17 1 0 317 0 1 570 1904 0 285 5 9 87 0 2 68 0 1 85 1 2 1686 0 2 388 0 2 969 15 32 18 5 9 25 chain 5262 chr14 107043718 + 52167608 52167896 LTR12C 1709 + 653 818 84380 32 129 6 35 69 69 23 chain 33200 chr14 107043718 + 52172121 52172577 MER9a3 513 + 37 513 39351 50 23 24 147 0 18 158 3 4 75 chain 52399 chr14 107043718 + 52179341 52179997 PABL_A 660 + 0 660 28757 124 1 0 315 0 1 68 0 4 70 12 12 66 chain 27244 chr14 107043718 + 52180042 52180390 THE1A 353 + 0 348 45907 82 5 6 22 1 0 238 chain 532067 chr14 107043718 + 52208174 52214289 L1PA5 6144 + 3 6143 1749 72 14 14 501 0 22 33 8 6 72 0 1 64 0 1 2191 0 2 182 1 0 518 2 0 607 0 1 1243 0 3 607 chain 4581 chr14 107043718 + 52225920 52225978 LTR38B 592 + 62 120 87903 58 chain 142231 chr14 107043718 + 52225978 52227524 L1PA3long 6157 + 4611 6157 12914 1546 chain 4752 chr14 107043718 + 52237252 52237335 LTR31 607 + 0 81 86951 26 16 14 41 chain 3769 chr14 107043718 + 52239802 52239873 MER5A1 166 + 60 129 93073 15 17 15 39 chain 248960 chr14 107043718 + 52255436 52258132 L1PA2 6032 + 3327 6032 8270 491 0 1 1183 3 2 946 0 9 73 chain 66598 chr14 107043718 + 52261451 52262188 L1PA4 6152 + 5403 6140 24797 737 chain 198848 chr14 107043718 + 52381839 52384278 L1P3 4156 + 0 2429 9750 179 1 2 70 2 1 70 1 0 79 17 0 78 0 1 4 1 0 134 0 1 128 0 1 141 0 1 352 1 2 11 0 1 177 0 1 29 0 3 290 1 0 4 0 1 263 1 0 405 chain 463261 chr14 107043718 + 52384291 52389515 L1PA4 6152 + 6 5357 4045 186 17 126 1028 0 1 854 0 7 105 1 0 717 0 9 5 0 1 767 0 1 1544 chain 3828 chr14 107043718 + 52428755 52429134 LTR40a 516 + 7 407 92661 34 136 122 23 169 204 17 chain 22927 chr14 107043718 + 52450533 52450853 L1PB1 5432 + 4732 5106 52477 65 1 7 98 0 1 61 9 55 74 0 1 12 chain 14702 chr14 107043718 + 52460240 52460421 L1PREC2 3366 + 2536 2717 62677 181 chain 400990 chr14 107043718 + 52475896 52480944 L1PB1 5432 + 19 5103 5138 381 2 0 6 3 0 137 1 0 9 6 5 204 0 2 33 0 1 26 0 2 17 0 4 15 0 4 89 0 1 431 19 27 92 0 2 198 2 0 357 2 0 293 0 2 137 1 0 142 0 1 32 0 10 140 0 3 20 2 0 309 11 12 329 0 1 238 6 0 323 0 1 7 0 5 152 1 5 85 0 1 55 9 0 147 1 0 116 3 0 38 2 0 5 1 2 22 8 10 99 1 0 124 4 12 24 1 5 45 1 5 84 chain 531639 chr14 107043718 + 52502588 52509057 L1PA4 6152 + 0 6143 1768 345 7 4 324 0 4 343 2 0 432 0 5 1298 0 1 20 0 4 144 0 1 211 8 0 18 1 3 26 1 0 332 1 0 415 339 0 714 0 1 238 1 0 1009 1 0 24 14 26 201 chain 37057 chr14 107043718 + 52529053 52529477 L1PA4 6152 + 5717 6146 36704 253 0 5 171 chain 521373 chr14 107043718 + 52567995 52574723 L1PA7 6471 + 0 6466 2208 51 11 0 383 12 14 127 16 25 20 20 21 380 1 0 4 0 1 15 3 0 133 0 10 79 1 0 116 15 14 240 0 2 175 1 0 48 59 5 60 0 1 60 2 3 164 1 0 489 0 1 63 0 4 49 0 4 337 0 3 289 264 0 159 0 4 834 0 1 25 2 0 8 0 2 246 0 24 157 0 1 300 1 3 5 2 0 461 1 4 67 0 1 229 0 1 288 1 2 13 8 12 222 4 0 7 chain 23265 chr14 107043718 + 52627570 52627848 AluSc5 308 + 6 285 51981 71 0 1 207 chain 31914 chr14 107043718 + 52639332 52639675 L1PA3long 6157 + 4447 4790 40400 343 chain 24046 chr14 107043718 + 52693222 52693551 MLT2A1 477 + 105 477 50738 64 4 1 9 0 1 18 0 6 181 3 0 10 7 49 33 chain 15398 chr14 107043718 + 52699142 52699406 L1MA7 2200 + 1358 1617 61784 41 1 0 87 54 51 18 1 0 62 chain 17439 chr14 107043718 + 52716216 52716472 L1MA7 2200 + 1523 1792 59303 6 0 3 21 1 0 33 0 3 96 0 2 20 5 14 32 7 4 35 chain 21879 chr14 107043718 + 52752211 52752480 AluSc 308 + 25 296 54003 45 0 2 224 chain 28482 chr14 107043718 + 52838456 52838791 L1PA5 6144 + 5812 6142 44152 89 1 0 234 4 0 7 chain 26450 chr14 107043718 + 52986669 52987098 MSTA 426 + 0 426 47052 133 0 1 29 11 7 36 64 63 142 0 1 14 chain 23679 chr14 107043718 + 53008432 53008778 THE1D 372 + 0 357 51309 61 20 20 85 16 28 142 2 1 20 chain 510323 chr14 107043718 + 53084655 53090879 L1PA6 6164 + 0 6162 2753 283 32 35 45 27 0 8 0 27 102 13 12 280 17 0 15 0 17 725 1 0 371 0 1 257 1 0 35 0 7 105 13 0 190 1 0 827 3 0 93 3 0 267 1 0 663 0 6 111 0 1 476 21 0 20 14 0 128 24 1 888 7 9 157 chain 64577 chr14 107043718 + 53107749 53108500 LTR17 781 + 0 772 25296 327 1 0 374 0 22 49 chain 199760 chr14 107043718 + 53119387 53121925 L1PA8 5853 + 3276 5847 9724 114 1 2 446 0 1 71 0 4 276 4 5 208 0 1 293 2 1 125 0 2 29 0 5 128 0 4 17 0 4 70 0 2 3 1 0 61 0 1 394 0 6 15 1 0 41 2 0 74 12 20 4 0 1 36 2 1 19 1 0 82 1 0 5 chain 3263 chr14 107043718 + 53127364 53127474 MIRc 230 + 91 210 97346 21 60 69 29 chain 26530 chr14 107043718 + 53128744 53129152 LTR7B 505 + 0 485 46931 95 0 31 82 9 7 17 4 27 63 7 32 87 14 13 20 0 1 10 chain 14645 chr14 107043718 + 53132300 53132481 HERVH-int 3825 + 3644 3825 62737 181 chain 32226 chr14 107043718 + 53135122 53136318 LTR7B 505 + 0 497 40165 93 0 31 84 34 0 21 720 23 27 0 3 83 1 0 23 0 1 52 14 13 18 1 0 25 chain 11013 chr14 107043718 + 53135360 53135552 LTR7B 505 + 290 505 68535 37 1 26 88 14 13 18 9 8 25 chain 13962 chr14 107043718 + 53135897 53136068 LTR7B 505 + 0 184 63641 94 0 3 8 0 10 69 chain 125603 chr14 107043718 + 53199632 53201206 THE1A-int 1579 + 9 1579 14612 143 17 4 873 0 9 242 4 5 227 3 2 65 chain 253564 chr14 107043718 + 53202753 53206767 L1PBa 3878 + 101 3750 8147 44 1 0 12 10 6 50 1 0 10 14 11 15 0 1 152 0 1 45 77 76 192 56 63 142 0 7 7 7 0 38 11 8 129 17 17 176 1 0 143 0 2 160 15 13 172 0 3 7 12 0 50 0 1 229 0 20 368 376 0 166 0 6 9 3 0 3 3 0 56 2 0 195 3 4 38 0 1 106 4 6 85 0 4 36 5 6 14 15 12 47 1 0 126 0 1 253 0 3 60 10 9 20 2 0 13 chain 16273 chr14 107043718 + 53242300 53242631 THE1A 353 + 0 341 60650 44 0 17 44 29 28 30 41 45 6 4 0 10 22 15 47 0 1 54 chain 39483 chr14 107043718 + 53242658 53244722 THE1A-int 1579 + 17 1457 35025 388 0 1 8 1552 927 116 chain 10436 chr14 107043718 + 53244722 53244837 THE1A-int 1579 + 1464 1579 69548 115 chain 33539 chr14 107043718 + 53245192 53245693 PRIMA4_LTR 623 + 0 611 39050 52 0 1 36 3 4 40 1 2 42 1 24 58 4 5 110 12 92 33 0 1 45 11 13 53 chain 27559 chr14 107043718 + 53260384 53260782 LTR3A 482 + 27 420 45500 82 0 1 118 45 33 10 1 5 72 0 1 31 0 1 39 chain 20119 chr14 107043718 + 53309491 53309734 THE1B-int 1605 + 1362 1605 56237 243 chain 70429 chr14 107043718 + 53310036 53311126 L1PB 1623 + 549 1595 23885 41 1 0 129 0 8 128 0 3 438 15 13 106 1 4 27 1 0 6 3 2 30 1 0 4 3 0 9 9 5 13 1 0 9 66 29 22 2 0 11 5 0 9 chain 535868 chr14 107043718 + 53318040 53324208 L1PA4 6152 + 0 6152 1574 2133 3 0 371 36 18 662 0 1 18 1 0 486 2 0 655 0 4 1219 0 1 119 4 0 160 2 0 191 0 1 100 0 7 6 chain 58892 chr14 107043718 + 53361642 53362365 HERV17-int 4347 + 1637 4347 26704 326 10 1997 387 chain 27601 chr14 107043718 + 53362680 53363005 LTR17 781 + 0 326 45454 119 0 11 169 10 0 27 chain 519233 chr14 107043718 + 53423803 53429910 L1PA6 6164 + 0 6162 2302 226 3 1 9 0 2 262 0 1 17 0 2 49 1 0 31 0 35 619 1 2 304 1 2 288 0 1 51 0 1 422 0 1 32 4 3 819 1 5 54 1 0 77 0 1 259 0 2 423 0 1 843 0 2 419 0 1 45 0 4 846 chain 6382 chr14 107043718 + 53455122 53455263 L1PB3 3668 + 3482 3612 79739 18 5 4 27 2 0 33 9 5 13 2 1 12 6 3 14 chain 28233 chr14 107043718 + 53522574 53522936 L1PA8 5853 + 5496 5853 44514 68 1 0 115 1 0 9 1 0 52 2 1 19 1 0 93 chain 31764 chr14 107043718 + 53556695 53557111 MLT2A1 477 + 0 469 40528 142 3 9 17 1 5 210 0 2 8 2 44 21 1 0 11 chain 4734 chr14 107043718 + 53627879 53627944 HSMAR2 1300 + 1234 1300 87058 37 1 2 27 chain 40569 chr14 107043718 + 53753081 53753935 L1M1 2793 + 673 1512 34247 29 98 110 19 2 0 8 1 0 54 12 9 100 29 28 96 14 15 36 8 7 54 13 0 9 50 40 124 17 21 68 1 0 12 chain 46132 chr14 107043718 + 53754286 53754901 THE1B-int 1605 + 1 693 30996 12 4 5 134 0 8 113 0 6 48 1 0 11 8 5 4 0 1 13 0 1 35 0 64 232 chain 14819 chr14 107043718 + 53774063 53774272 MER30 238 + 0 237 62503 17 1 8 82 5 25 28 0 1 76 chain 535303 chr14 107043718 + 53797910 53804327 L1PA7 6471 + 1 6465 1605 178 2 1 40 0 1 191 11 6 476 5 49 552 0 3 659 0 1 346 1 0 128 4 0 59 0 2 1667 1 2 115 6 10 858 0 1 69 0 2 205 5 6 256 0 1 574 3 0 6 chain 4381 chr14 107043718 + 53811466 53811590 L1MD1 2063 + 1705 1821 88991 17 3 0 16 6 5 14 34 30 34 chain 25033 chr14 107043718 + 53816874 53817163 L1PA7 6471 + 6008 6297 49225 289 chain 12187 chr14 107043718 + 53817187 53817337 L1PA7 6471 + 6320 6470 66492 150 chain 180972 chr14 107043718 + 53829709 53832309 L1PBa 3878 + 175 2636 10549 38 190 38 272 2 1 68 0 10 168 1 4 13 0 1 7 1 0 17 38 38 130 4 7 199 0 3 252 0 2 171 1 0 6 6 0 350 0 2 203 3 1 460 chain 12590 chr14 107043718 + 53832327 53832659 L1PB1 5432 + 5108 5422 65812 5 3 0 31 1 0 14 5 1 9 2 0 49 21 19 45 4 3 12 3 0 15 9 0 15 72 79 17 chain 24488 chr14 107043718 + 53837381 53837689 AluY 311 + 0 307 50048 25 3 0 106 7 8 99 0 1 68 chain 46996 chr14 107043718 + 53837873 53838437 L1PA6 6164 + 5584 6152 30663 242 0 1 183 0 1 55 11 13 73 chain 27891 chr14 107043718 + 53868222 53868746 L1PA14 3548 + 2897 3379 45049 7 0 1 24 12 10 14 2 0 47 2 0 5 2 0 8 28 0 29 1 6 57 17 13 13 2 0 6 1 0 28 3 5 51 3 1 110 16 11 36 chain 16161 chr14 107043718 + 53876948 53877131 L1PA7 6471 + 4772 4955 60801 183 chain 695 chr14 107043718 + 53877140 53878648 L1PA7 6471 + 4963 6469 43385 651 9 7 848 chain 45486 chr14 107043718 + 53887724 53888254 L1PA5 6144 + 5618 6143 31314 192 0 1 324 6 0 8 chain 86713 chr14 107043718 + 53910332 53911263 L1PA2 6032 + 5094 6025 20269 931 chain 116766 chr14 107043718 + 53985141 53986689 THE1B-int 1605 + 0 1599 16092 15 0 2 16 0 1 4 1 0 5 28 42 269 8 9 69 11 36 999 10 19 113 chain 6712 chr14 107043718 + 54015642 54015721 L1PREC2 3366 + 2543 2622 78606 79 chain 66271 chr14 107043718 + 54018931 54019888 L1PB2 3958 + 2912 3838 24886 11 1 0 63 1 2 230 7 6 32 10 3 50 2 0 51 2 1 13 10 0 22 0 1 21 1 2 15 5 3 13 4 0 94 1 0 72 1 0 64 1 0 68 2 0 25 4 3 61 chain 34357 chr14 107043718 + 54055613 54056014 L1P1 4361 + 3056 3460 38454 121 1 0 69 0 4 210 chain 3420 chr14 107043718 + 54100127 54100289 MER5C 305 + 141 300 95899 14 47 46 17 44 45 6 3 0 31 chain 39944 chr14 107043718 + 54112013 54112667 L1MA5A 2387 + 1660 2295 34702 39 14 13 31 0 3 90 30 18 106 0 1 69 8 7 32 1 0 39 1 0 18 1 0 4 9 25 60 3 0 15 19 0 65 chain 85808 chr14 107043718 + 54197928 54198986 MER11B 1079 + 0 1064 20487 388 0 1 137 0 1 243 1 3 103 0 1 156 1 2 29 chain 159919 chr14 107043718 + 54202595 54204900 SVA_D 2077 + 11 2070 11761 570 0 233 102 98 0 16 78 0 15 11 0 89 0 2 60 1 0 83 48 0 159 1 0 168 254 0 221 0 10 331 chain 6467 chr14 107043718 + 54203269 54203365 SVA_D 2077 + 1005 1103 32305 31 0 2 65 chain 2084 chr14 107043718 + 54203402 54203450 SVA_D 2077 + 751 799 29447 48 chain 3234 chr14 107043718 + 54203718 54203766 SVA_D 2077 + 1309 1357 32305 48 chain 10114 chr14 107043718 + 54204094 54204327 SVA_D 2077 + 1156 1388 29447 228 1 0 4 chain 559888 chr14 107043718 + 54233883 54240023 L1PA3long 6157 + 4 6157 175 1057 0 7 378 0 1 2017 0 1 1845 0 4 843 chain 12671 chr14 107043718 + 54324029 54324273 L1PB1 5432 + 5106 5327 65678 8 1 0 24 1 0 9 16 11 9 2 0 53 2 1 16 1 0 44 1 0 15 1 0 4 18 8 19 chain 3716 chr14 107043718 + 54343236 54343278 MER53 195 - 129 171 93493 42 chain 191399 chr14 107043718 + 54379031 54381398 L1PA7 6471 + 4077 6468 10048 200 0 2 73 5 7 51 2 0 443 2 1 469 0 1 219 1 0 56 0 4 18 0 3 69 16 19 49 0 5 49 7 7 311 6 14 12 0 1 39 0 4 259 5 0 6 chain 107522 chr14 107043718 + 54393285 54394630 LTR12C 1709 + 7 1701 17385 181 0 7 78 12 26 124 0 1 370 10 326 104 0 4 171 8 0 115 1 3 42 0 3 24 0 10 105 chain 127947 chr14 107043718 + 54442868 54444443 LTR12C 1709 + 0 1702 14283 719 0 118 275 1 0 4 5 3 105 0 4 283 0 4 45 0 1 7 1 0 110 0 4 20 chain 4819 chr14 107043718 + 54473670 54473728 LTR8 732 + 674 732 86603 58 chain 25802 chr14 107043718 + 54518263 54518573 AluSp 311 + 0 305 48009 128 5 0 177 chain 16748 chr14 107043718 + 54602620 54602807 L1PA5 6144 + 5957 6144 60096 187 chain 3462 chr14 107043718 + 54714664 54714708 MIRb 242 + 152 197 95520 26 0 1 18 chain 8056 chr14 107043718 + 54802030 54802190 L1PB1 5432 + 5282 5422 74738 14 2 0 6 1 0 9 9 0 12 11 8 17 2 0 22 1 0 21 1 0 13 1 0 18 chain 32745 chr14 107043718 + 54847301 54847725 MLT2A1 477 + 20 477 39721 149 1 5 150 1 0 61 3 33 59 chain 54123 chr14 107043718 + 54850951 54851571 L1PA5 6144 + 4700 5332 28183 184 2 14 434 chain 465545 chr14 107043718 + 54870364 54875671 L1PA4 6152 + 0 5338 3975 162 2 4 1066 4 5 1181 5 0 305 0 9 784 0 1 210 0 1 62 0 1 567 0 2 196 0 19 344 0 1 4 1 0 414 chain 5934 chr14 107043718 + 54891024 54891097 MER44C 733 + 37 110 81348 73 chain 9695 chr14 107043718 + 54917605 54917835 MER33 330 + 17 247 71057 14 73 74 17 4 0 24 1 3 25 0 1 72 chain 6150 chr14 107043718 + 54929085 54929174 MER11A 1151 + 1063 1151 80537 22 8 7 59 chain 523950 chr14 107043718 + 54948075 54954067 L1PA5 6144 + 3 6087 2093 417 2 53 96 0 1 114 7 1 180 0 4 153 1 0 691 0 9 689 5 0 166 0 2 926 2 0 270 0 10 157 1 0 793 0 18 463 0 1 82 0 3 736 6 14 35 chain 4348 chr14 107043718 + 54963288 54963346 MER104 178 + 13 77 89191 49 0 6 9 chain 41654 chr14 107043718 + 54970659 54971294 L1P4 1494 + 703 1348 33590 129 9 10 59 27 31 148 9 12 137 5 6 4 1 0 97 0 2 10 chain 9511 chr14 107043718 + 54971464 54971603 L1P4 1494 + 523 663 71447 21 13 10 13 0 1 35 0 3 57 chain 74272 chr14 107043718 + 55024549 55025503 LTR5_Hs 974 + 0 974 23009 289 0 1 114 0 14 49 0 1 188 1 0 163 8 15 19 20 18 103 chain 23791 chr14 107043718 + 55050452 55050741 AluSc 308 + 0 294 51120 41 0 5 69 0 5 114 5 0 60 chain 7401 chr14 107043718 + 55058917 55059048 MER2 342 + 180 317 76387 28 8 13 66 10 11 19 chain 6976 chr14 107043718 + 55111551 55111657 LTR32 486 + 12 125 77682 72 14 21 20 chain 78224 chr14 107043718 + 55173619 55174661 MER11C 1089 + 0 1069 22044 222 4 0 24 0 9 62 0 4 47 0 3 12 1 0 152 31 32 123 1 5 4 1 0 38 0 1 17 1 0 25 1 9 76 0 1 54 1 0 71 0 3 70 0 1 4 chain 6689 chr14 107043718 + 55201795 55201921 LTR36 617 + 456 585 78673 35 6 7 38 1 0 15 13 16 18 chain 6873 chr14 107043718 + 55280826 55280910 MER2 342 + 257 341 78058 84 chain 12792 chr14 107043718 + 55442782 55443083 MLT1B 390 + 0 377 65453 44 126 203 99 1 0 31 chain 9881 chr14 107043718 + 55474043 55474156 L1PA7 6471 + 6348 6461 70658 113 chain 11059 chr14 107043718 + 55485101 55485238 MER6A 605 + 323 459 68471 114 1 0 22 chain 83063 chr14 107043718 + 55494163 55495220 MER11C 1089 + 0 1073 21005 23 2 1 222 0 9 62 0 4 65 1 0 304 1 5 4 1 0 38 0 1 127 0 1 54 1 0 144 0 1 8 chain 15277 chr14 107043718 + 55516661 55516917 Tigger3a 397 + 1 319 61947 35 13 18 21 24 83 89 4 0 27 0 2 43 chain 104479 chr14 107043718 + 55521560 55522963 L1MA3 4352 + 2370 3851 17761 11 0 38 40 11 9 48 5 0 31 8 0 19 0 1 12 6 4 140 0 2 448 1 0 213 0 32 140 0 23 270 chain 38069 chr14 107043718 + 55528368 55528828 MER4A1 472 + 0 472 36016 369 0 12 91 chain 11902 chr14 107043718 + 55550859 55551466 L1MC1 2226 + 907 1485 67002 42 199 165 52 11 10 13 101 118 31 1 0 4 17 11 36 69 65 31 chain 4535 chr14 107043718 + 55592440 55592489 MER8 282 + 0 49 88137 49 chain 8458 chr14 107043718 + 55651533 55651631 HY3 101 + 0 99 73779 73 0 1 25 chain 28204 chr14 107043718 + 55700652 55701004 THE1A 353 + 1 353 44556 28 0 1 81 1 0 242 chain 4708 chr14 107043718 + 55735585 55735660 MER58A 224 + 41 116 87207 50 1 2 4 1 0 19 chain 25258 chr14 107043718 + 55736242 55736599 THE1C 375 + 0 355 48855 103 3 4 71 23 20 157 chain 4582 chr14 107043718 + 55755130 55755223 MER5A 189 + 86 180 87892 38 27 28 28 chain 213146 chr14 107043718 + 55810978 55813513 L1PA5 6144 + 1141 3704 9232 28 9 0 275 0 4 137 27 0 249 0 4 633 0 51 648 1 0 73 0 4 422 1 4 27 1 0 4 chain 88002 chr14 107043718 + 55839355 55840661 LTR12E 1234 + 21 1234 20045 308 10 53 22 1 0 5 0 1 47 2 1 236 41 0 146 9 20 25 1 0 153 101 0 32 0 1 21 1 0 17 20 13 45 0 4 63 chain 159008 chr14 107043718 + 55861630 55863538 L1P1 4361 + 1 1903 11808 85 1 2 486 1 0 128 12 5 470 1 4 407 2 0 315 chain 20351 chr14 107043718 + 55931382 55931638 L1PA8A 6298 + 6038 6291 55945 17 5 1 127 0 1 107 chain 3449 chr14 107043718 + 55967083 55967186 ORSL 269 + 5 109 95653 15 52 53 36 chain 33722 chr14 107043718 + 56007261 56007621 L1PA3long 6157 + 5035 5395 38907 360 chain 3643 chr14 107043718 + 56010336 56010432 MER33 330 + 185 272 94075 5 0 1 22 39 29 30 chain 12214 chr14 107043718 + 56012325 56012577 MER44A 345 + 104 314 66453 70 1 7 43 21 0 12 22 1 5 5 0 10 6 5 57 chain 5748 chr14 107043718 + 56075482 56075562 MADE1 96 + 0 96 82135 42 1 17 37 chain 24555 chr14 107043718 + 56102272 56102566 AluSp 311 + 5 299 49936 294 chain 518662 chr14 107043718 + 56228633 56234747 L1PA5 6144 + 0 6130 2329 120 0 14 215 0 1 160 0 6 654 9 0 1139 7 0 53 0 2 159 8 6 1404 0 1 331 0 1 64 0 2 5 0 2 204 0 1 114 1 0 428 12 12 185 12 16 13 0 1 817 chain 3976 chr14 107043718 + 56235144 56235190 MADE1 96 + 50 96 91599 46 chain 14027 chr14 107043718 + 56242450 56242637 L1PB2 3958 + 3655 3838 63550 24 1 0 74 2 0 19 1 0 66 chain 220316 chr14 107043718 + 56252678 56255633 L1PA7 6471 + 3779 6459 9033 318 0 6 197 1 2 269 1 0 6 0 2 309 0 9 52 3 0 246 0 4 31 300 0 266 0 1 58 6 5 61 0 3 73 0 2 613 0 2 145 chain 35580 chr14 107043718 + 56277170 56277653 MER1A 529 + 41 528 37669 236 6 7 173 7 9 40 1 2 20 chain 30686 chr14 107043718 + 56319928 56320339 MSTA 426 + 0 414 41396 146 16 18 124 5 6 120 chain 21867 chr14 107043718 + 56406059 56406387 L1PA15 4387 + 1166 1496 54020 33 19 22 43 4 1 35 5 3 157 0 4 32 chain 24090 chr14 107043718 + 56425395 56425747 THE1B 368 + 0 368 50660 40 1 16 85 0 4 20 9 7 122 19 18 56 chain 511801 chr14 107043718 + 56454503 56460543 L1PA5 6144 + 33 6132 2671 92 1 15 1015 0 1 13 9 0 497 1 3 40 1 0 71 0 19 510 20 12 255 0 2 13 0 2 50 0 1 166 0 24 330 1 0 89 0 2 349 3 1 743 1 5 519 0 3 418 1 5 51 0 3 117 2 0 104 3 4 555 chain 38970 chr14 107043718 + 56531160 56531735 LTR71B 605 + 1 605 35379 124 11 25 44 24 16 11 4 3 76 1 29 99 6 0 6 3 4 115 1 2 50 chain 29977 chr14 107043718 + 56564509 56564837 AluYb8 318 + 0 318 42080 118 10 0 200 chain 6313 chr14 107043718 + 56575284 56575367 MLT2C1 407 + 16 99 79954 83 chain 11252 chr14 107043718 + 56639201 56639431 L1MA3 4352 + 4119 4328 68163 47 34 17 38 0 4 10 4 0 25 2 0 22 9 8 26 2 1 11 chain 534740 chr14 107043718 + 56639511 56645645 L1PA4 6152 + 0 6143 1633 127 0 14 387 12 0 205 1 0 310 0 2 191 0 1 7 4 0 168 4 9 65 23 0 830 0 4 116 0 4 743 1 0 197 3 0 307 0 4 660 0 4 432 1 4 251 0 2 195 0 4 58 0 3 52 0 3 13 1 0 371 0 1 399 chain 557660 chr14 107043718 + 56667527 56673561 L1PA2 6032 + 0 6032 262 5179 9 8 780 1 0 65 chain 5218 chr14 107043718 + 56824217 56824292 MADE1 96 + 0 91 84592 32 1 17 42 chain 50384 chr14 107043718 + 56988917 56989476 L1P1 4361 + 2719 3278 29415 559 chain 115494 chr14 107043718 + 56990883 56992263 LTR12C 1709 + 0 1709 16310 208 6 26 45 1 28 157 0 3 183 0 278 184 1 0 4 4 2 106 0 4 135 0 1 58 1 0 287 chain 3203 chr14 107043718 + 57015145 57015181 MIR 256 + 24 60 97865 36 chain 405510 chr14 107043718 + 57099708 57110943 L1PA7 6471 + 1401 6468 5087 250 0 4 506 6171 0 30 8 13 157 8 9 46 8 11 205 19 0 117 9 13 620 0 1 120 1 0 127 5 6 411 2 1 214 0 2 223 0 1 1024 0 1 108 2 0 815 0 2 20 0 1 9 chain 548258 chr14 107043718 + 57112210 57118214 L1PA2 6032 + 0 6029 847 257 1 0 1822 0 2 611 0 7 1476 0 1 336 1 11 1486 0 6 14 chain 5493 chr14 107043718 + 57128415 57128478 MER2 342 + 136 199 83263 63 chain 20590 chr14 107043718 + 57152047 57152365 Tigger2 2703 + 2326 2649 55659 127 12 23 55 1 0 18 13 5 65 0 3 7 0 2 5 2 0 13 chain 54910 chr14 107043718 + 57228054 57228702 L1PA7 6471 + 5659 6307 27903 39 0 2 257 1 0 285 1 0 65 chain 13930 chr14 107043718 + 57228704 57228866 L1PA7 6471 + 6308 6470 63702 162 chain 49012 chr14 107043718 + 57258118 57258688 L1PA7 6471 + 5881 6451 29948 570 chain 12294 chr14 107043718 + 57278842 57279028 L1PA11 4918 + 4326 4508 66297 67 2 1 77 5 3 14 2 1 19 chain 115837 chr14 107043718 + 57333055 57334474 SVA_D 2077 + 0 1740 16271 437 0 156 285 0 83 42 26 77 99 49 0 55 3 82 30 0 1 35 0 8 11 8 0 339 chain 2332 chr14 107043718 + 57333819 57333845 SVA_D 2077 + 1181 1207 59152 26 chain 2601 chr14 107043718 + 57333944 57333973 SVA_D 2077 + 1306 1335 59152 29 chain 3943 chr14 107043718 + 57354351 57354432 L1MB5 1630 + 1143 1223 91808 13 26 25 42 chain 303951 chr14 107043718 + 57364612 57370689 L1PA7 6471 + 3 6446 6745 307 9 12 89 0 1 82 5 1 101 1 0 62 28 24 528 0 4 28 0 5 104 2208 2530 603 0 3 133 2 1 55 0 4 239 0 7 58 0 1 305 3 4 46 0 1 64 0 12 197 0 3 521 0 1 67 1 2 12 0 7 219 chain 42997 chr14 107043718 + 57365956 57366468 MER9a3 513 + 0 513 32773 140 0 1 247 2 0 27 0 2 96 chain 69823 chr14 107043718 + 57367122 57368010 HERVK9-int 4720 + 36 918 24040 13 8 5 4 1 0 66 1 0 8 1 0 30 2 1 15 1 2 123 1 0 81 1 0 6 8 9 80 0 1 438 chain 17782 chr14 107043718 + 57431868 57432471 L1M1 2793 + 540 1052 58915 14 2 0 8 11 7 10 1 0 12 3 0 5 38 22 17 83 29 11 0 2 20 45 32 10 13 9 11 3 15 13 25 24 19 2 0 9 1 0 42 39 36 86 1 0 49 chain 24981 chr14 107043718 + 57443464 57443760 L1PA7 6471 + 6165 6463 49314 150 0 1 32 0 1 114 chain 22978 chr14 107043718 + 57488587 57488956 L1PA11 4918 + 4232 4578 52396 96 5 0 60 9 8 10 1 2 67 2 0 33 4 0 11 29 20 15 1 0 13 2 0 11 chain 2964 chr14 107043718 + 57550247 57550353 MLT1F2 592 + 75 180 100261 16 59 58 31 chain 175707 chr14 107043718 + 57585235 57587784 L1PA7 6471 + 4203 6469 10791 70 5 8 25 4 0 360 0 12 67 4 0 27 0 9 158 1 0 10 1 0 257 1 0 6 0 1 191 325 0 224 0 30 40 0 1 191 4 0 100 1 4 191 0 3 119 16 14 143 3 0 5 chain 465968 chr14 107043718 + 57618240 57626318 L1PA7 6471 + 1 6457 3963 196 8 7 272 1 0 370 1 2 5 1 0 136 5 6 402 0 3 96 1 0 164 0 1 333 0 2 357 2273 0 74 0 1 146 1 2 13 1 0 7 0 1 41 0 3 32 7 5 225 0 2 151 0 4 40 0 4 90 0 1 72 3 4 275 13 14 377 5 1 724 6 10 408 0 1 218 0 627 77 0 2 337 0 1 114 chain 186313 chr14 107043718 + 57620755 57622821 L1PA3long 6157 + 4083 6149 10283 58 0 1 79 1 0 672 0 1 846 1 0 409 chain 5009 chr14 107043718 + 57674133 57674201 L1ME2z 1083 + 438 505 85619 39 2 1 27 chain 33515 chr14 107043718 + 57676586 57677048 L1PB2 3958 + 3385 3838 39076 53 2 0 14 1 0 4 9 8 81 1 0 72 1 0 64 2 1 22 0 1 50 2 0 20 1 0 63 chain 33396 chr14 107043718 + 57677995 57678422 L1PA7 6471 + 1927 2357 39178 212 1 0 78 0 3 104 10 11 22 chain 216652 chr14 107043718 + 57678422 57681107 L1PA7 6471 + 2358 5044 9128 280 5 0 313 4 3 63 0 3 456 9 10 4 1 0 58 0 1 374 0 1 514 0 3 52 6 5 4 0 1 19 0 2 425 1 0 9 1 0 74 1 0 12 chain 21866 chr14 107043718 + 57681107 57681360 L1PA7 6471 + 5045 5298 54021 253 chain 94405 chr14 107043718 + 57681491 57682648 L1PA7 6471 + 5298 6470 18981 200 0 4 19 0 1 92 0 3 521 0 1 159 6 12 160 chain 23147 chr14 107043718 + 57689634 57689897 L1PA5 6144 + 5881 6144 52146 263 chain 43515 chr14 107043718 + 57693294 57693793 MER9a3 513 + 14 513 32445 127 0 1 116 1 0 255 chain 78245 chr14 107043718 + 57694986 57695860 L1PA3long 6157 + 4962 5836 22040 874 chain 93928 chr14 107043718 + 57695918 57697085 L1PA8 5853 + 4679 5853 19050 213 0 3 115 0 2 9 8 17 44 0 2 212 0 1 235 2 0 30 1 0 46 2 0 74 1 0 12 3 1 49 1 0 16 1 0 93 chain 16419 chr14 107043718 + 57707656 57708604 THE1D-int 1627 + 32 247 60490 116 733 0 99 chain 455694 chr14 107043718 + 57721090 57726728 HERVL-int 5654 + 0 5653 4242 101 1 2 6 1 0 17 0 1 419 30 10 266 18 7 27 10 15 253 1 0 9 7 11 85 2 1 125 0 1 440 1 0 119 1 0 11 0 2 142 0 9 111 0 12 705 0 5 1036 14 10 92 0 1 43 0 2 380 9 10 742 0 1 178 3 12 15 0 1 218 chain 34484 chr14 107043718 + 57726729 57727191 MLT2A1 477 + 0 477 38368 169 4 1 212 0 2 19 4 0 14 5 21 29 0 4 6 chain 460002 chr14 107043718 + 57740801 57746244 L1PA5 6144 + 654 6144 4126 128 0 29 6 1 18 329 14 5 44 2 1 253 0 2 17 0 1 141 6 19 54 0 1 749 0 1 365 0 1 339 2 1 43 1 0 524 1 0 46 0 1 143 5 4 175 0 1 497 0 1 6 0 6 8 20 0 4 2 0 42 0 1 177 1 0 75 0 9 889 0 1 171 8 7 155 chain 54169 chr14 107043718 + 57777136 57777781 L1PA6 6164 + 5514 6156 28162 475 8 6 9 1 0 152 chain 190457 chr14 107043718 + 57786541 57792905 L1PB1 5432 + 75 5413 10093 14 1 2 209 0 3 289 48 51 72 0 1 265 8 11 151 0 1 84 0 2 165 1 0 7 7 0 6 0 1 151 0 1 85 21 27 269 0 1 255 3471 2476 23 1 2 112 32 33 259 1 2 9 21 0 24 1 0 6 1 0 12 7 3 9 3 1 51 2 1 15 1 0 43 0 1 16 3 0 6 15 6 18 23 19 25 1 0 21 1 0 13 1 0 9 chain 45697 chr14 107043718 + 57788664 57789232 L1PA7 6471 + 2956 3540 31207 139 0 4 304 0 9 25 0 3 100 chain 74426 chr14 107043718 + 57789236 57790167 L1PA7 6471 + 3548 4481 22979 460 1 2 146 8 4 7 0 4 102 1 0 4 0 2 202 chain 43806 chr14 107043718 + 57790167 57790699 L1PA7 6471 + 4483 5023 32247 186 0 8 346 chain 14716 chr14 107043718 + 57790699 57790871 L1PA7 6471 + 5024 5196 62652 172 chain 103291 chr14 107043718 + 57790871 57792120 L1PA7 6471 + 5197 6465 17873 424 2 0 38 0 4 22 0 2 19 1 0 4 0 1 271 0 16 344 0 1 116 2 0 6 chain 43776 chr14 107043718 + 57793863 57794572 L1PB3 3668 + 2498 3220 32271 133 1 13 12 85 75 99 11 26 7 4 0 123 7 5 13 0 2 214 chain 328339 chr14 107043718 + 57800387 57805268 L1PA11 4918 + 50 4629 6247 28 2 0 6 16 14 17 1 0 15 2 0 51 1 0 32 2 0 5 2 1 192 6 4 11 10 11 330 10 14 15 3 1 240 0 1 110 4 10 42 1 0 4 1 2 29 0 2 6 0 26 132 2 1 201 12 16 196 4 1 155 0 1 59 22 23 24 0 5 19 1 4 21 8 12 68 6 1 21 5 6 6 1 0 22 0 4 15 0 3 246 0 5 50 1 17 63 0 1 43 0 2 13 16 3 554 316 0 103 0 2 266 8 7 235 4 5 286 0 2 116 6 4 18 15 10 57 2 1 13 2 0 68 2 0 8 6 5 9 0 2 10 21 11 10 13 9 15 1 0 13 60 44 18 chain 39755 chr14 107043718 + 57825583 57826092 L1PA10 4194 + 3652 4161 34851 293 13 17 154 3 0 34 1 0 11 chain 43306 chr14 107043718 + 57842730 57843273 MLT2A2 560 + 0 560 32563 142 0 1 148 0 1 69 0 3 38 1 12 48 0 1 97 chain 68254 chr14 107043718 + 57855220 57856034 L1PA6 6164 + 5188 6007 24392 127 2 0 677 0 7 8 chain 67140 chr14 107043718 + 57857933 57858678 L1PA5 6144 + 5387 6132 24665 745 chain 6312 chr14 107043718 + 57900618 57900693 L1PA11 4918 + 4109 4184 79957 75 chain 24146 chr14 107043718 + 57900693 57901103 L1PA11 4918 + 4189 4578 50581 142 0 1 5 0 1 55 2 1 13 2 0 46 4 0 21 2 0 14 0 2 18 4 0 9 46 36 14 2 0 11 chain 3134 chr14 107043718 + 57903528 57903562 MLT2F 649 + 460 494 98510 34 chain 6464 chr14 107043718 + 57907239 57907372 Tigger1 2417 + 2251 2386 79469 72 40 42 21 chain 27769 chr14 107043718 + 57923860 57924209 THE1B 368 + 0 348 45227 172 2 1 175 chain 526526 chr14 107043718 + 57951005 57957444 L1PA7 6471 + 0 6469 1975 140 38 55 205 0 4 62 1 0 875 0 1 190 0 1 653 0 5 8 0 1 320 0 4 108 0 2 73 0 1 545 0 1 60 0 1 53 6 8 236 1 0 217 2 0 149 18 3 445 5 7 54 0 1 707 0 1 107 1 0 54 0 1 263 1 0 89 1 0 83 0 1 110 0 1 226 0 1 183 1 2 138 1 4 10 chain 4399 chr14 107043718 + 57985044 57985092 MADE1 96 + 48 96 88890 48 chain 20690 chr14 107043718 + 58006681 58006914 L1PA5 6144 + 5905 6138 55510 233 chain 6163 chr14 107043718 + 58007831 58007998 L1MC4 1079 + 708 878 80471 43 77 80 47 chain 556392 chr14 107043718 + 58032539 58038561 L1PA2 6032 + 1 6028 339 741 1 0 1839 0 5 1720 0 1 1721 chain 338006 chr14 107043718 + 58040983 58044852 L1PA5 6144 + 0 5374 6107 326 0 1518 470 1 0 389 3 0 521 0 5 225 15 6 981 9 0 856 0 4 73 chain 8095 chr14 107043718 + 58075000 58075097 L1PA7 6471 + 5710 5807 74649 97 chain 55812 chr14 107043718 + 58075102 58075754 L1PA7 6471 + 5807 6461 27624 249 0 1 79 0 1 170 0 7 7 6 0 131 1 0 9 chain 285374 chr14 107043718 + 58122280 58125504 HERV17-int 4347 + 1125 4347 7275 320 9 10 566 1 0 933 2 0 1393 chain 27899 chr14 107043718 + 58125818 58126144 LTR17 781 + 0 326 45042 326 chain 3378 chr14 107043718 + 58133970 58134058 MIR 256 + 64 151 96317 16 36 35 36 chain 3782 chr14 107043718 + 58173467 58173524 L1MB3 1562 + 1433 1487 92972 5 2 0 31 1 0 18 chain 6575 chr14 107043718 + 58197518 58197608 MLT1C 463 + 219 306 79053 5 3 0 82 chain 7441 chr14 107043718 + 58233531 58233633 Tigger2a 444 + 289 390 76270 40 2 1 60 chain 8383 chr14 107043718 + 58357548 58357720 MER30 238 + 52 232 73938 41 3 7 16 6 5 42 0 5 8 27 0 8 0 27 21 chain 4894 chr14 107043718 + 58377442 58377502 MER53 195 + 0 60 86185 60 chain 27365 chr14 107043718 + 58416919 58417275 THE1B 368 + 0 368 45746 44 0 15 110 13 12 11 2 0 176 chain 4077 chr14 107043718 + 58441575 58441621 HY1 111 + 9 55 90902 46 chain 3909 chr14 107043718 + 58443091 58443136 MER81 114 + 30 75 92059 45 chain 12078 chr14 107043718 + 58452033 58452276 L1PB1 5432 + 5210 5427 66704 10 2 1 16 2 1 42 1 0 16 3 0 6 16 6 19 2 0 5 1 0 16 2 0 22 1 0 22 1 0 12 1 0 18 2 0 5 chain 528454 chr14 107043718 + 58525297 58532175 L1PA7 6471 + 35 6451 1896 376 0 1 125 1 0 125 0 2 219 4 6 342 0 4 29 1 0 131 1 4 132 153 5 601 1 0 502 8 10 29 0 2 1329 1 0 657 0 12 128 0 4 702 0 1 108 0 3 16 350 0 224 7 12 255 13 11 178 1 2 129 chain 62918 chr14 107043718 + 58588492 58589169 SVA_F 1814 + 1138 1814 25652 666 1 0 10 chain 231258 chr14 107043718 + 58590710 58593328 L1PA5 6144 + 3238 5872 8717 41 1 0 416 0 2 69 0 1 1282 1 0 245 1 0 416 0 14 78 0 2 68 chain 22382 chr14 107043718 + 58594790 58595061 AluSp 311 + 28 304 53301 193 0 5 78 chain 20358 chr14 107043718 + 58610353 58610630 L1MA4 2864 + 2384 2672 55938 70 0 1 20 0 4 22 1 0 4 0 4 116 1 3 9 0 1 34 chain 3863 chr14 107043718 + 58629848 58629891 MER57B2 428 + 385 428 92389 43 chain 12637 chr14 107043718 + 58743075 58743224 L1PA7 6471 + 6314 6464 65737 7 0 1 142 chain 5680 chr14 107043718 + 58771158 58771235 MADE1 96 + 3 96 82431 30 1 17 46 chain 13487 chr14 107043718 + 58834387 58834662 LTR12C 1709 + 771 1079 64329 66 1 0 34 0 2 11 0 119 60 87 0 16 chain 5244 chr14 107043718 + 58834559 58834636 LTR12C 1709 + 744 877 72855 5 2 17 6 0 1 49 1 41 14 chain 23924 chr14 107043718 + 58875374 58875675 AluSp 311 + 0 305 50907 53 6 11 50 1 0 191 chain 38165 chr14 107043718 + 58889168 58889663 L1PA6 6164 + 5672 6162 35939 33 3 1 49 1 0 77 1 0 168 11 10 152 chain 27728 chr14 107043718 + 58901982 58902360 THE1D-int 1627 + 0 482 45280 15 6 8 322 1 103 34 chain 122010 chr14 107043718 + 58921436 58923272 L1PA16 3655 + 1726 3570 15190 62 3 0 5 9 11 106 1 0 22 8 10 56 65 17 31 2 1 114 0 8 134 6 1 53 1 7 18 9 17 22 0 1 6 1 0 71 2 7 83 2 0 86 14 13 44 0 42 124 1 0 24 1 0 4 7 6 199 2 3 67 1 0 89 2 0 122 1 0 108 0 2 48 chain 276114 chr14 107043718 + 58924538 58928387 L1PA10 4194 + 250 4146 7546 15 9 7 14 46 20 7 1 0 22 2 0 24 1 0 4 1 0 11 4 6 14 1 0 9 1 0 22 50 51 5 2 0 84 0 6 9 8 2 101 0 2 72 35 36 25 12 21 133 11 13 305 0 4 27 1 2 257 0 9 37 5 6 106 0 1 331 0 1 218 0 2 163 1 0 175 0 1 45 8 12 14 0 5 29 2 0 99 3 0 49 10 10 9 1 0 25 18 51 385 4 5 5 0 1 84 0 1 191 0 4 72 0 3 216 0 4 132 0 1 35 3 0 29 chain 4881 chr14 107043718 + 58957933 58957997 MLT1A0 366 + 79 143 86258 4 1 0 36 0 1 23 chain 13431 chr14 107043718 + 59016664 59017008 L1MA8 2339 + 1852 2188 64414 30 42 44 8 2 0 47 8 18 10 6 5 61 60 46 43 3 0 24 chain 42546 chr14 107043718 + 59026654 59027179 L1PA8A 6298 + 5751 6289 33036 120 0 10 227 0 1 36 8 10 134 chain 181063 chr14 107043718 + 59108987 59111393 L1PBa1 4058 + 1667 4040 10546 99 0 2 120 0 1 183 2 6 52 0 1 155 0 2 491 12 1 655 1 0 116 16 8 7 0 4 95 1 0 7 1 0 29 1 0 36 11 9 103 3 2 17 1 0 12 6 0 15 2 0 6 27 22 19 1 0 19 3 1 7 1 0 5 1 0 9 1 0 15 1 0 42 chain 9186 chr14 107043718 + 59209086 59209301 MER72 723 + 453 723 72148 65 90 145 60 chain 2756 chr14 107043718 + 59279723 59279761 L1ME2 1516 + 702 738 101922 31 2 0 5 chain 7574 chr14 107043718 + 59301975 59302153 Tigger4a 237 + 49 196 75921 12 26 7 60 28 20 28 4 0 20 chain 65132 chr14 107043718 + 59396257 59396987 L1PA4 6152 + 5403 6145 25156 26 2 15 448 1 0 253 chain 470879 chr14 107043718 + 59409455 59414845 L1PA5 6144 + 0 5381 3832 114 1 0 587 1 0 1612 1 0 227 0 1 629 1 0 32 1 0 547 16 8 189 1 3 547 0 1 884 chain 225309 chr14 107043718 + 59445364 59448118 HERVH-int 3825 + 86 3825 8880 120 0 3 124 2 1 40 3 1 50 5 793 366 1 0 102 6 11 307 26 0 82 7 8 149 0 1 21 5 6 30 0 1 151 0 1 53 1 3 608 10 220 260 0 2 225 chain 26901 chr14 107043718 + 59449378 59449777 LTR7 482 + 0 474 46405 68 9 47 109 12 13 29 0 31 8 0 3 111 12 14 41 chain 26863 chr14 107043718 + 59454009 59454372 MLT2A1 477 + 0 477 46454 70 0 1 99 4 1 8 0 1 23 1 2 143 0 114 15 chain 29276 chr14 107043718 + 59507853 59508279 LTR3A 482 + 0 420 42928 109 0 1 5 0 1 28 0 1 83 49 40 112 0 1 26 1 0 13 chain 483439 chr14 107043718 + 59513180 59518670 L1PA4 6152 + 0 5493 3569 3177 1 0 2127 1 5 184 chain 41175 chr14 107043718 + 59521029 59521553 MLT2A2 560 + 0 560 33854 17 0 4 60 2 1 96 0 33 349 chain 539799 chr14 107043718 + 59551493 59557626 L1PA5 6144 + 4 6144 1352 1132 0 2 249 0 1 193 0 1 691 0 1 39 1 0 1289 0 2 268 0 1 64 1 0 694 0 5 609 4 0 899 chain 21019 chr14 107043718 + 59589176 59589465 AluSg7 307 + 8 281 55098 17 0 5 199 29 8 44 chain 39747 chr14 107043718 + 59591672 59592174 LTR3B_ 500 + 0 500 34858 302 2 1 76 12 11 110 chain 93244 chr14 107043718 + 59611714 59614363 HUERS-P1-int 2401 + 148 2139 19152 4 1 0 14 9 4 31 9 0 4 48 0 26 1 0 12 5 0 33 4 0 8 68 49 12 5 1 13 31 7 6 1 0 11 1 0 45 3 0 7 1 0 38 1 0 8 2 0 23 18 0 26 7 4 14 11 2 15 9 6 24 2 1 96 10 0 15 14 17 13 0 1 89 11 5 4 1 0 122 0 2 44 2 1 14 1 0 6 2 0 35 4 0 14 2 1 18 0 1 28 2 0 10 1 0 28 3 0 80 0 1 27 18 14 67 0 1 30 2 0 10 1 0 14 1 0 22 54 51 49 308 0 10 1 0 42 3 4 51 22 21 8 4 0 22 75 53 13 13 11 14 9 0 11 213 133 6 1 0 12 2 1 38 1 0 13 5 0 8 0 1 4 34 11 25 1 0 3 1 0 10 4 6 4 1 0 9 1 0 4 6 5 45 2 0 15 chain 115070 chr14 107043718 + 59649011 59650415 L1PA8 5853 + 4448 5853 16377 539 1 0 8 1 4 9 0 5 551 1 0 44 2 0 71 1 0 61 2 1 19 1 0 93 chain 31437 chr14 107043718 + 59650440 59650878 L1PREC2 3366 + 2255 2703 40784 27 4 3 232 4 5 136 15 25 20 chain 3324 chr14 107043718 + 59656001 59656103 L1MB7 1623 + 1438 1532 96810 6 7 0 6 3 0 28 1 0 12 17 23 5 3 0 14 chain 532959 chr14 107043718 + 59657446 59664473 L1PA7 6471 + 0 6466 1712 411 0 1 266 9 4 232 0 15 87 0 1 196 0 4 536 5 0 883 1 3 488 0 1 22 0 4 375 1 0 21 1 0 279 13 0 432 1 0 57 0 2 268 13 1 45 503 0 541 0 1 170 66 0 279 0 5 167 5 15 496 7 0 6 10 17 135 chain 380679 chr14 107043718 + 59665136 59669613 L1PA6 6164 + 1693 6162 5469 640 0 1 33 0 1 454 0 1 367 2 1 175 0 2 155 18 0 863 0 7 476 0 1 446 1 0 693 1 0 153 chain 325320 chr14 107043718 + 59734213 59738571 L1PA11 4918 + 7 4567 6301 35 2 0 32 8 5 30 5 4 15 11 10 40 1 0 36 5 2 1389 0 196 12 4 1 99 0 2 241 6 17 22 2 1 5 0 1 11 6 7 26 15 17 28 0 2 250 1 0 86 1 0 201 12 24 58 0 1 517 0 3 291 0 1 277 0 1 180 0 1 5 0 1 42 0 6 78 0 1 11 6 0 65 2 1 69 16 15 10 1 0 20 4 0 9 8 3 10 29 24 13 chain 5296 chr14 107043718 + 59808503 59808565 MER65D 500 + 0 62 84219 62 chain 3509 chr14 107043718 + 59831760 59831804 Ricksha_c 1012 + 538 584 95179 15 0 2 29 chain 24214 chr14 107043718 + 59859174 59859514 THE1B 368 + 0 368 50470 44 0 15 48 0 1 30 1 14 17 1 0 22 0 2 9 9 7 159 chain 110125 chr14 107043718 + 59859514 59861118 THE1B-int 1605 + 0 1600 17064 42 32 17 230 5 6 133 3 28 40 13 19 7 1 0 153 0 1 4 28 32 70 9 15 222 1 0 4 22 24 209 33 0 210 0 1 133 chain 164789 chr14 107043718 + 59890954 59892785 L1PA4 6152 + 3524 5356 11428 1291 0 1 540 chain 14246 chr14 107043718 + 59905771 59906143 MSTB1 431 + 34 415 63274 20 8 10 38 8 9 19 20 14 8 0 4 35 1 0 6 78 90 21 6 0 9 15 18 80 chain 31752 chr14 107043718 + 59975882 59976370 MER1A 529 + 41 529 40537 39 17 17 73 3 0 5 19 22 81 1 0 176 20 21 54 chain 30327 chr14 107043718 + 59979650 59979977 L1PA3long 6157 + 5830 6157 41735 327 chain 3386 chr14 107043718 + 59985510 59985551 MER66C 541 + 369 410 96223 41 chain 246056 chr14 107043718 + 59991337 59994156 L1PA4 6152 + 7 2830 8327 468 0 4 677 0 3 187 0 1 152 0 1 262 1 0 53 3 0 218 4 3 794 chain 137831 chr14 107043718 + 60047376 60049183 L1PA11 4918 + 1242 3069 13278 173 1 0 5 0 4 34 0 3 56 2 5 196 0 3 92 4 1 188 3 4 9 1 0 50 0 4 44 0 1 72 1 0 354 1 0 20 18 21 190 1 6 292 chain 73233 chr14 107043718 + 60059120 60061580 Tigger1 2417 + 1 2356 23273 142 3 5 19 0 4 60 1418 1269 113 0 33 11 8 0 51 0 1 13 0 6 133 0 1 48 0 2 58 0 3 27 8 11 245 2 0 40 1 0 60 chain 347624 chr14 107043718 + 60073188 60079400 L1PA7 6471 + 0 6424 5941 159 0 1 29 0 1 83 28 29 311 13 14 48 25 36 29 0 12 486 0 4 27 11 24 31 17 0 61 6 9 196 0 1 132 0 1 241 0 12 148 6 12 128 1823 1973 327 1 3 385 1 2 256 1 0 401 0 2 395 0 8 407 chain 37103 chr14 107043718 + 60080698 60081197 MLT2A2 560 + 0 547 36675 14 1 5 157 8 41 182 7 18 130 chain 55317 chr14 107043718 + 60100643 60101367 MER4E 760 + 0 737 27772 20 5 4 96 0 4 27 22 25 185 0 4 86 1 0 140 0 4 142 chain 3057 chr14 107043718 + 60189432 60189469 MIR 256 + 49 87 99235 27 0 1 10 chain 4268 chr14 107043718 + 60224691 60224739 MLT1C 463 + 57 105 89717 48 chain 34618 chr14 107043718 + 60231503 60231927 L1PA8A 6298 + 5301 5722 38271 188 3 1 90 1 0 142 chain 31927 chr14 107043718 + 60237216 60237655 MLT2A1 477 + 0 476 40390 17 0 4 148 4 1 11 0 1 22 0 1 180 21 55 36 chain 6146 chr14 107043718 + 60309676 60309809 MER3 215 + 56 215 80546 42 47 73 44 chain 210090 chr14 107043718 + 60339972 60342360 L1PA4 6152 + 2954 5347 9349 217 8 6 68 0 1 1065 0 1 19 0 1 971 1 5 39 chain 26088 chr14 107043718 + 60370278 60370697 MSTA 426 + 0 426 47591 134 35 32 47 4 0 12 21 27 48 9 17 109 chain 3235 chr14 107043718 + 60376438 60376486 Tigger1 2417 - 718 773 97620 22 1 0 18 0 8 7 chain 511350 chr14 107043718 + 60381631 60387770 L1PA6 6164 + 0 6151 2693 236 0 2 216 13 11 32 5 4 17 0 2 47 1 0 9 0 1 109 0 1 142 1 2 43 0 1 433 0 1 885 0 2 129 21 0 230 0 1 441 0 1 197 1 2 147 0 1 955 0 2 60 0 4 312 1 2 32 0 1 293 0 1 308 0 11 60 0 4 15 0 2 425 1 0 75 0 2 50 5 1 45 1 0 146 chain 510411 chr14 107043718 + 60443052 60449193 L1PA6 6164 + 0 6161 2748 481 0 1 80 5 4 1208 18 1 183 1 0 161 0 3 195 8 10 212 0 3 623 0 1 24 0 1 19 8 20 80 0 1 990 0 2 62 0 4 58 7 8 457 5 6 417 0 11 26 0 2 409 6 0 68 0 1 298 0 1 23 2 0 7 chain 3576 chr14 107043718 + 60452315 60452360 L1MA2 4263 + 4069 4113 94610 36 1 0 8 chain 15210 chr14 107043718 + 60462672 60462908 MER30 238 + 0 238 62027 93 0 3 11 27 29 62 3 0 40 chain 6302 chr14 107043718 + 60501414 60501605 MLT1C 463 + 224 429 79985 22 16 26 21 76 80 56 chain 10060 chr14 107043718 + 60531515 60531631 L1PA4 6152 + 6023 6141 70283 7 0 2 109 chain 26699 chr14 107043718 + 60534746 60535119 THE1C 375 + 0 375 46685 103 0 1 78 30 32 135 1 0 26 chain 4561 chr14 107043718 + 60536911 60536964 MER33 330 + 5 58 88015 53 chain 23689 chr14 107043718 + 60554702 60555059 L1MA2 4263 + 3770 4114 51291 25 15 12 149 11 9 93 7 0 47 1 0 9 chain 23044 chr14 107043718 + 60604529 60604867 THE1C 375 + 43 375 52302 52 20 23 161 1 0 37 8 0 23 0 1 9 1 0 26 chain 88547 chr14 107043718 + 60604867 60606121 THE1C-int 1605 + 0 1238 19936 12 7 8 59 0 1 38 0 1 51 3 0 40 0 1 8 0 1 107 0 6 107 5 12 71 5 6 56 0 1 22 2 0 77 10 12 56 6 0 32 18 0 388 14 5 60 chain 2911 chr14 107043718 + 60607066 60607097 U3 216 + 0 31 100741 31 chain 117425 chr14 107043718 + 60730476 60731832 L1PA6 6164 + 4806 6162 15982 508 2 1 252 0 1 594 chain 19900 chr14 107043718 + 60765294 60765529 L1PA7 6471 + 6232 6465 56534 227 2 0 6 chain 2771 chr14 107043718 + 60800095 60800126 Tigger13a 716 + 207 238 101840 31 chain 8688 chr14 107043718 + 60851388 60851534 Tigger1 2417 + 55 198 73241 5 2 0 27 20 19 92 chain 237513 chr14 107043718 + 60887608 60890255 L1PA3long 6157 + 3154 5801 8533 769 0 1 719 1 0 193 8 7 457 0 1 500 chain 14006 chr14 107043718 + 60950516 60950710 MER30 238 + 26 238 63589 72 1 2 21 8 25 92 chain 6612 chr14 107043718 + 60974333 60974432 U6 107 + 7 104 78935 23 11 9 65 chain 4872 chr14 107043718 + 60995771 60995896 L1MC1 2226 + 1961 2076 86309 19 3 0 14 2 0 27 9 8 18 21 17 12 chain 258196 chr14 107043718 + 61004443 61007327 L1PA3long 6157 + 3252 6157 8018 10 2 0 678 5 7 13 0 4 678 0 5 657 0 4 224 0 2 603 0 6 14 chain 18697 chr14 107043718 + 61036337 61036607 L1PA8 5853 + 5587 5853 57903 22 2 0 66 5 4 11 1 0 9 0 1 40 2 1 19 1 0 87 0 1 5 chain 43893 chr14 107043718 + 61124685 61125235 MER41A 554 + 0 554 32194 133 12 10 326 7 12 5 0 1 67 chain 6289 chr14 107043718 + 61227687 61227768 MADE1 96 + 0 96 80034 45 0 15 36 chain 2555 chr14 107043718 + 61231144 61231192 MIR 256 + 70 121 103351 24 7 9 13 0 1 4 chain 17474 chr14 107043718 + 61233541 61233888 THE1C 375 + 1 363 59264 59 8 22 8 14 0 39 23 23 33 48 64 99 2 1 14 chain 16496 chr14 107043718 + 61236237 61236426 MER41A 554 + 0 189 60385 189 chain 39151 chr14 107043718 + 61237259 61237835 MER4D1 891 + 230 784 35247 182 2 1 16 1 0 154 0 1 14 0 7 50 55 35 43 8 0 51 chain 24600 chr14 107043718 + 61286509 61286785 AluSp 311 + 15 291 49867 276 chain 3806 chr14 107043718 + 61452242 61452373 Arthur1A 176 + 25 170 92804 26 42 56 16 1 0 4 16 17 26 chain 19861 chr14 107043718 + 61474475 61474715 L1PA6 6164 + 5915 6161 56594 38 0 9 192 3 0 7 chain 45911 chr14 107043718 + 61529424 61529914 L1PA2 6032 + 5538 6028 31097 490 chain 4093 chr14 107043718 + 61557888 61558065 MLT1I 406 + 249 406 90828 20 116 96 41 chain 8424 chr14 107043718 + 61584941 61585075 MER53 195 + 1 194 73852 59 5 63 32 5 6 33 chain 3489 chr14 107043718 + 61621243 61621281 MLT2D 439 + 391 429 95323 38 chain 89388 chr14 107043718 + 61657705 61658687 L1PA5 6144 + 5161 6144 19780 132 0 1 850 chain 13321 chr14 107043718 + 61755850 61756034 MER4A 717 + 500 691 64587 83 10 17 91 chain 42668 chr14 107043718 + 61765997 61766535 LTR10C 591 + 1 585 32964 293 0 39 130 0 8 27 2 1 86 chain 257399 chr14 107043718 + 61942868 61946210 L1PA7 6471 + 3445 6461 8046 58 1 0 1655 4 0 306 0 1 149 0 2 520 324 0 325 chain 17427 chr14 107043718 + 61993186 61993417 L1PA8 5853 + 5614 5843 59319 68 1 0 10 1 0 48 2 1 77 2 3 22 chain 31811 chr14 107043718 + 62142280 62142710 MER75 514 + 44 512 40488 152 6 5 51 6 25 46 0 18 146 0 2 23 chain 213653 chr14 107043718 + 62146873 62149936 L1PB1 5432 + 1268 5413 9214 74 0 1 52 1 0 12 72 1212 6 5 0 217 1 0 128 0 6 115 5 2 242 6 7 56 0 1 285 1 2 31 4 11 162 1 2 64 1 0 202 7 8 349 23 14 80 13 12 91 1 0 390 28 4 7 1 0 26 1 0 8 27 20 51 2 1 18 1 0 44 1 0 13 72 56 20 1 0 21 1 0 13 1 0 9 chain 19061 chr14 107043718 + 62184263 62184591 THE1A 353 + 0 351 57481 20 3 1 21 0 25 14 45 44 108 11 12 106 chain 17014 chr14 107043718 + 62193263 62193532 L1PA8 5853 + 5587 5847 59791 23 2 0 69 1 0 8 15 8 44 3 2 13 1 0 6 2 1 48 0 4 34 chain 116063 chr14 107043718 + 62231015 62232571 THE1B-int 1605 + 0 1600 16222 171 0 1 4 1 0 16 19 34 190 13 38 344 0 1 10 3 10 5 7 0 184 0 1 5 4 3 110 0 1 59 1 2 241 1 2 168 chain 26368 chr14 107043718 + 62232577 62232921 THE1B 368 + 1 348 47167 12 2 0 23 0 6 130 4 3 173 chain 5758 chr14 107043718 + 62242427 62242581 MER53 195 + 9 167 82094 30 0 1 24 67 70 33 chain 24615 chr14 107043718 + 62246519 62246848 THE1B 368 + 42 366 49848 120 11 10 30 1 0 89 3 0 75 chain 214125 chr14 107043718 + 62286319 62288718 L1HS 6032 + 1808 4211 9200 1320 0 4 1079 chain 131208 chr14 107043718 + 62327558 62329026 L1PA4 6152 + 4500 5969 13900 663 0 1 805 chain 20792 chr14 107043718 + 62423566 62423848 L1PA8 5853 + 5573 5853 55371 6 0 4 27 2 0 69 1 0 14 1 0 45 4 3 19 2 1 92 chain 465684 chr14 107043718 + 62521097 62526515 L1PA5 6144 + 0 6138 3972 1162 0 15 215 0 692 110 0 2 161 0 4 827 2 1 54 0 4 104 9 13 727 3 0 115 0 1 983 0 1 100 0 4 87 0 1 300 8 3 310 1 2 140 chain 561090 chr14 107043718 + 62535851 62541854 L1HS 6032 + 2 6032 148 380 2 22 282 0 3 3540 0 4 1799 chain 23799 chr14 107043718 + 62552433 62552901 L1MA3 4352 + 3886 4325 51107 19 1 0 19 28 33 64 1 0 72 50 26 80 1 2 34 4 0 12 13 11 24 1 0 6 1 0 27 1 0 10 chain 71179 chr14 107043718 + 62609510 62610670 L1PB2 3958 + 2713 3838 23723 135 27 25 45 8 7 22 6 0 7 1 9 12 6 5 98 0 1 55 0 1 18 0 1 150 8 6 53 1 0 11 5 0 65 2 0 101 1 0 43 22 3 31 1 0 64 1 0 11 0 1 14 23 21 17 16 14 15 9 8 56 chain 552112 chr14 107043718 + 62636563 62642708 L1PA3long 6157 + 4 6157 600 611 0 10 117 3 0 301 1 0 147 1 4 1265 3 1 3547 0 1 149 chain 4232 chr14 107043718 + 62650749 62650810 MLT2B4 540 + 429 492 89934 17 1 3 43 chain 27009 chr14 107043718 + 62671726 62672169 MLT2A1 477 + 0 477 46258 140 0 1 28 1 5 153 34 39 16 31 51 10 7 11 23 chain 28017 chr14 107043718 + 62708963 62709259 AluYd8 298 + 0 296 44840 296 chain 38187 chr14 107043718 + 62736340 62736847 LTR19A 502 + 0 501 35917 65 10 4 230 3 2 152 0 1 47 chain 20290 chr14 107043718 + 62765705 62766052 L1MA1 4479 + 3874 4205 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119 1 0 75 chain 4645 chr14 107043718 + 63138045 63138112 L1PB1 5432 + 5358 5422 87555 12 1 0 21 1 0 13 1 0 18 chain 172792 chr14 107043718 + 63164800 63166830 SVA_D 2077 + 0 2071 10963 31 1 0 185 1 0 612 40 0 75 0 84 29 0 51 124 48 0 27 1 0 128 0 1 4 0 1 36 0 1 84 2 0 459 4 0 139 chain 2510 chr14 107043718 + 63165902 63165946 SVA_D 2077 + 1017 1064 40664 15 0 3 29 chain 115109 chr14 107043718 + 63194101 63195636 THE1C-int 1605 + 0 1605 16373 16 1 2 92 0 54 165 13 19 50 0 1 46 9 16 66 0 1 51 2 7 10 11 3 74 1 2 34 1 0 137 0 1 368 3 2 65 14 17 306 chain 23844 chr14 107043718 + 63195636 63195956 THE1C 375 + 0 325 51031 142 14 18 26 0 1 138 chain 5100 chr14 107043718 + 63207742 63207875 MIR 256 + 77 218 85160 42 59 67 32 chain 3701 chr14 107043718 + 63297583 63297634 MER5A1 166 + 69 120 93605 10 0 1 36 1 0 4 chain 347016 chr14 107043718 + 63302775 63308007 L1PB1 5432 + 685 5420 5949 295 289 0 52 6 5 13 9 31 211 6 1 72 51 32 13 7 8 131 0 4 123 0 1 192 0 1 118 15 14 495 1 0 83 0 1 172 11 11 38 11 7 79 1 4 199 7 3 41 1 9 338 0 1 119 2 1 122 5 0 10 2 0 306 101 11 244 0 7 281 0 2 28 9 7 63 7 0 128 24 23 211 0 1 5 2 1 50 96 11 24 1 0 9 27 20 52 1 0 18 1 0 41 6 5 13 3 0 15 9 0 14 1 0 3 1 0 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 5699 chr14 107043718 + 63306439 63306517 L1PB1 5432 + 983 1060 82345 49 2 1 27 chain 416979 chr14 107043718 + 63332829 63338554 L1PB1 5432 + 9 5418 4920 4 1 0 6 1 0 144 23 24 262 2 1 94 3 1 14 6 11 81 6 0 160 0 1 348 1 0 137 0 1 110 0 3 261 0 5 65 280 4 115 0 1 112 7 0 372 0 1 159 9 14 39 0 7 134 1 0 141 14 15 301 0 2 41 0 1 334 0 3 155 0 1 42 23 1 33 7 0 191 0 1 212 2 0 447 3 0 470 0 4 8 1 2 9 3 0 24 1 0 9 1 0 10 16 10 53 2 1 15 1 0 44 1 0 9 21 8 30 2 0 5 1 0 10 5 4 24 1 0 22 0 3 9 1 0 14 chain 29313 chr14 107043718 + 63420770 63421081 AluYa5 310 + 0 310 42868 132 1 0 178 chain 28895 chr14 107043718 + 63490189 63490732 L1PA17 2846 + 2117 2693 43490 47 1 4 14 2 0 63 1 0 33 43 87 124 14 10 11 1 0 22 2 1 44 31 28 27 1 0 17 1 0 21 4 1 6 0 3 13 chain 5969 chr14 107043718 + 63518832 63518898 MER41B 635 + 481 547 81197 66 chain 151170 chr14 107043718 + 63521972 63523727 SVA_D 2077 + 63 2069 12278 702 3 0 8 19 19 6 0 3 110 10 47 28 1 0 48 2 4 18 0 127 120 0 98 657 12 0 11 chain 19839 chr14 107043718 + 63540472 63540736 AluSp 311 + 24 296 56620 9 0 16 71 8 0 12 1 0 85 0 1 78 chain 5127 chr14 107043718 + 63560891 63560947 MSTA 426 + 370 426 85033 56 chain 2156 chr14 107043718 + 63565157 63565180 L1PB1 5432 + 5370 5393 105504 23 chain 5075 chr14 107043718 + 63577142 63577209 MSTD 398 + 0 68 85272 27 2 3 38 chain 8666 chr14 107043718 + 63606257 63606411 Tigger3b 1229 + 538 687 73308 28 18 0 10 1 12 29 2 4 66 chain 4151 chr14 107043718 + 63639388 63639437 MER41E 591 + 403 452 90458 49 chain 7084 chr14 107043718 + 63646713 63646927 LTR56 451 + 31 261 77313 34 117 133 63 chain 5554 chr14 107043718 + 63659119 63659186 U3 216 + 1 68 83013 67 chain 19658 chr14 107043718 + 63666752 63667000 AluSp 311 + 18 265 56847 150 7 6 91 chain 19317 chr14 107043718 + 63681262 63681621 THE1C 375 + 0 375 57223 14 2 0 33 0 6 11 28 30 15 4 5 65 31 27 19 4 17 133 chain 2663 chr14 107043718 + 63713510 63713562 Ricksha_b 1102 - 15 52 102647 9 15 0 28 chain 2984 chr14 107043718 + 63724732 63724773 AluSx4 309 - 171 210 100019 12 1 0 3 1 0 24 chain 33192 chr14 107043718 + 63795104 63795576 MLT2A1 477 + 0 477 39360 169 5 2 184 22 8 22 4 0 17 15 35 27 0 6 7 chain 23112 chr14 107043718 + 63801391 63801684 AluSp 311 + 2 292 52190 83 8 0 143 0 5 59 chain 2993 chr14 107043718 + 63829479 63829514 L1MB8 1703 + 1223 1258 99898 35 chain 16655 chr14 107043718 + 63927379 63928039 THE1B 368 + 0 368 60208 45 1 2 53 25 26 48 0 2 6 355 60 64 27 26 36 chain 7210 chr14 107043718 + 63956675 63956806 MER2 342 + 53 178 76909 16 0 2 7 12 15 22 0 1 26 12 0 36 chain 21669 chr14 107043718 + 64081855 64082100 AluY 311 + 51 297 54267 81 0 1 164 chain 34588 chr14 107043718 + 64099937 64100312 L1PA3long 6157 + 5604 5979 38294 375 chain 33446 chr14 107043718 + 64278785 64279350 MER4B 649 + 0 619 39137 8 1 0 22 1 0 113 3 1 12 1 43 126 16 31 44 55 56 96 0 1 11 11 10 45 chain 3602 chr14 107043718 + 64320930 64321035 L1MC2 1988 + 1864 1973 94409 32 30 35 15 8 7 20 chain 20592 chr14 107043718 + 64340212 64340492 AluSp 311 + 14 290 55652 70 3 1 47 12 10 148 chain 23757 chr14 107043718 + 64486039 64486312 AluY 311 + 22 293 51184 101 2 0 170 chain 5441 chr14 107043718 + 64535903 64536036 THE1B 368 + 195 346 83502 5 1 0 14 20 39 49 19 17 13 0 2 12 chain 21208 chr14 107043718 + 64627420 64627752 THE1D 372 + 0 333 54873 57 29 0 13 4 14 20 0 1 17 1 11 57 0 3 45 2 8 87 chain 43700 chr14 107043718 + 64644702 64645253 MER41A 554 + 0 554 32322 92 0 1 9 0 1 219 0 1 46 5 4 87 0 1 93 chain 107677 chr14 107043718 + 64657995 64659374 LTR12C 1709 + 0 1709 17366 256 2 1 31 0 13 37 0 43 82 0 2 4 1 0 19 19 12 79 0 2 69 0 278 184 1 0 6 2 0 106 0 4 26 0 1 91 0 2 204 7 6 62 7 5 84 chain 11540 chr14 107043718 + 64769998 64770143 L1MB8 1703 + 1435 1580 67684 145 chain 45348 chr14 107043718 + 64780245 64781281 L1PA14 3548 + 2755 3456 31395 55 1 0 109 331 20 14 2 0 47 2 0 5 11 9 100 4 0 17 2 0 6 1 0 84 1 0 4 1 2 104 1 0 12 5 1 34 4 2 13 5 3 18 1 0 42 chain 47086 chr14 107043718 + 64860739 64861309 L1PA8A 6298 + 5701 6291 30617 236 3 22 216 3 4 112 chain 27753 chr14 107043718 + 64935031 64935344 L1PA3long 6157 + 5844 6157 45244 313 chain 5440 chr14 107043718 + 64956052 64956120 MER5A 189 + 5 75 83504 14 0 1 33 0 1 21 chain 24956 chr14 107043718 + 64974237 64974525 AluY 311 + 7 302 49352 69 0 6 50 0 1 169 chain 3664 chr14 107043718 + 65001152 65001202 MER2 342 + 166 213 93878 12 3 0 35 chain 25909 chr14 107043718 + 65060439 65060723 AluYa5 310 + 25 304 47848 247 2 0 27 3 0 5 chain 120843 chr14 107043718 + 65086259 65087819 THE1B-int 1605 + 0 1598 15369 412 0 1 4 1 0 15 0 25 456 3 0 113 5 7 71 5 1 242 0 1 181 0 17 52 chain 27889 chr14 107043718 + 65087826 65088189 THE1B 368 + 0 368 45053 55 0 9 108 3 2 26 2 0 48 0 1 20 2 0 99 chain 8231 chr14 107043718 + 65114829 65114946 LTR47A 437 + 0 140 74322 90 5 28 22 chain 11695 chr14 107043718 + 65193645 65193794 THE1C 375 + 223 374 67407 127 1 0 8 0 3 13 chain 54586 chr14 107043718 + 65202774 65203444 LTR12_ 688 + 0 670 28016 25 1 0 166 0 5 234 4 0 240 chain 17156 chr14 107043718 + 65301041 65301272 MER30 238 + 0 230 59625 103 12 14 82 3 0 31 chain 42546 chr14 107043718 + 65365396 65366123 MER41A 554 + 0 554 33037 193 0 1 228 0 1 18 186 6 19 0 5 83 chain 5580 chr14 107043718 + 65551471 65551685 L1MA10 1535 + 1314 1498 82896 61 128 98 25 chain 8841 chr14 107043718 + 65559357 65559467 MER2 342 + 150 260 72889 110 chain 13588 chr14 107043718 + 65578462 65578667 MER30 238 + 0 238 64187 14 1 15 75 11 27 21 0 6 41 4 1 38 chain 81831 chr14 107043718 + 65603684 65604808 L1PB1 5432 + 1380 2517 21275 16 0 3 163 0 9 114 0 5 23 0 23 18 38 10 97 12 17 279 0 1 79 0 1 29 0 3 5 12 9 129 6 0 104 chain 140682 chr14 107043718 + 65632981 65634579 SVA_D 2077 + 12 2077 13045 4 1 0 6 1 0 9 13 0 427 0 39 411 1 0 8 4 395 34 0 2 3 0 50 44 0 1 4 0 1 609 1 0 18 chain 37352 chr14 107043718 + 65657226 65657873 L1MA3 4352 + 3630 4278 36517 85 0 1 4 1 0 14 0 5 124 10 8 164 1 0 57 106 91 51 10 24 20 chain 48215 chr14 107043718 + 65694516 65695050 L1PA3long 6157 + 5620 6156 30213 529 0 2 5 chain 16027 chr14 107043718 + 65747295 65747599 L1PB3 3668 + 3297 3581 60995 86 23 27 68 22 6 10 1 0 9 2 1 24 3 1 34 10 6 12 chain 36856 chr14 107043718 + 65774707 65775104 L1PA3long 6157 + 5760 6157 36842 397 chain 23257 chr14 107043718 + 65830194 65830549 THE1A 353 + 0 353 51991 15 2 0 32 17 18 25 4 4 17 0 2 6 17 15 68 1 0 151 chain 16076 chr14 107043718 + 65860281 65860472 L1HS 6032 + 10 725 60922 86 0 524 105 chain 504246 chr14 107043718 + 65892117 65898490 L1PA6 6164 + 38 6160 2991 78 0 3 46 1 20 196 0 2 65 9 1 118 1 0 220 0 17 268 8 7 7 0 3 45 2 1 582 0 1 613 0 3 183 0 1 64 1 8 504 0 1 159 0 6 372 304 0 482 0 2 172 12 14 1010 0 4 515 0 1 14 4 0 54 0 1 98 5 6 148 6 0 7 chain 30303 chr14 107043718 + 65977739 65978111 MLT2A1 477 + 0 371 41757 169 4 1 12 0 1 21 0 1 166 chain 20714 chr14 107043718 + 65978406 65978757 THE1B 368 + 0 368 55479 15 3 1 24 0 5 124 1 0 6 4 3 14 56 72 104 chain 126826 chr14 107043718 + 65978757 65980334 THE1B-int 1605 + 0 1605 14435 424 6 27 24 4 5 135 10 6 35 0 8 554 0 2 385 chain 11527 chr14 107043718 + 65999874 66000086 LTR76 689 + 7 682 67703 18 0 1 9 3 14 80 33 485 33 5 4 31 chain 40630 chr14 107043718 + 66034552 66035078 MLT2A2 560 + 23 560 34199 142 0 1 15 1 0 219 5 16 144 chain 20355 chr14 107043718 + 66041846 66042079 L1PA5 6144 + 5891 6124 55942 98 1 0 12 0 1 122 chain 27270 chr14 107043718 + 66054702 66055057 THE1B 368 + 0 366 45866 44 0 15 116 1 0 25 2 0 106 4 3 57 chain 68931 chr14 107043718 + 66062108 66062869 L1PA4 6152 + 5389 6152 24229 491 0 2 270 chain 46005 chr14 107043718 + 66084018 66084793 L1PB1 5432 + 4667 5417 31061 112 1 0 28 0 8 288 13 11 24 1 0 4 3 2 12 18 12 52 23 21 40 1 0 14 55 41 10 2 0 24 13 12 10 1 0 12 1 0 13 chain 6726 chr14 107043718 + 66100710 66100790 MER4B 649 + 264 344 78556 80 chain 479888 chr14 107043718 + 66143479 66150239 L1PA8A 6298 + 36 6291 3637 4 1 0 16 1 0 11 21 10 26 3 0 14 2 0 5 1 0 6 3 0 4 2 0 17 1 0 8 24 21 11 2 0 6 0 2 7 7 4 13 1 0 8 2 1 11 24 17 8 2 0 36 14 11 15 8 0 34 0 1 44 3 1 9 6 5 10 7 5 78 1 0 177 1 2 114 4 0 274 5 9 171 0 1 135 1 2 216 6 5 9 0 3 53 6 10 234 504 0 28 6 9 429 3 0 112 1 0 61 1 0 23 3 8 24 1 13 467 0 1 251 0 43 143 2 0 140 0 4 10 17 18 149 11 10 662 0 1 289 5 4 120 22 0 540 0 3 46 0 1 554 1 4 51 7 8 22 13 14 99 chain 36007 chr14 107043718 + 66145441 66145919 MER9a3 513 + 15 506 37409 96 0 1 17 1 14 113 1 0 155 2 1 21 2 3 70 chain 461765 chr14 107043718 + 66201092 66206346 L1PA4 6152 + 621 5881 4088 162 0 1 2381 0 1 399 0 1 20 0 1 1189 3 2 1039 0 3 61 chain 6472 chr14 107043718 + 66225737 66225950 MER34B 572 + 446 572 79439 27 0 2 18 115 26 53 chain 3516 chr14 107043718 + 66241872 66241910 tRNA-Gly-GGA 38 + 0 38 95132 38 chain 92672 chr14 107043718 + 66277894 66278968 L1PA6 6164 + 5088 6161 19243 52 1 0 1021 chain 3807 chr14 107043718 + 66279730 66279795 MLT1G1 539 + 243 304 92793 41 7 4 4 1 0 12 chain 129540 chr14 107043718 + 66289196 66290621 L1PA3long 6157 + 4728 6153 14090 1425 chain 407394 chr14 107043718 + 66295799 66300611 L1PA6 6164 + 0 6159 5052 518 0 2 47 1 0 519 0 19 341 1 0 92 10 4 84 0 1 133 0 1 28 0 1323 77 0 1 847 0 1 321 1 9 940 1 0 96 1 0 599 1 2 154 chain 12785 chr14 107043718 + 66320076 66320247 L1MA5 2750 + 1316 1554 65461 120 0 1 42 0 66 9 chain 454517 chr14 107043718 + 66333341 66338924 L1PA7 6471 + 903 6457 4275 263 13 7 586 1 0 32 6 14 222 0 1 613 1 0 108 4 13 10 38 5 323 0 4 387 1 0 6 1 2 82 1 0 40 9 1 552 0 4 65 0 1 191 1 0 174 0 1 203 0 4 235 0 5 21 28 9 280 1 0 252 0 6 506 1 0 326 chain 3859 chr14 107043718 + 66339519 66339579 Charlie10b 242 + 95 156 92414 27 4 5 29 chain 5369 chr14 107043718 + 66372840 66373018 MLT2B3 573 + 370 573 83856 16 10 11 13 60 72 10 1 0 16 6 19 46 chain 4881 chr14 107043718 + 66377952 66378058 MER104 178 + 29 137 86256 22 28 31 29 1 0 26 chain 4275 chr14 107043718 + 66396554 66396599 L1PA4 6152 + 4712 4757 89653 45 chain 125523 chr14 107043718 + 66396599 66397991 L1PA4 6152 + 4758 6151 14625 542 0 1 850 chain 5706 chr14 107043718 + 66406978 66407122 LTR33A_ 513 + 350 495 82314 16 63 64 65 chain 7777 chr14 107043718 + 66421601 66421745 MER53 195 + 0 195 75421 27 40 91 77 chain 9423 chr14 107043718 + 66441338 66441499 L1MA10 1535 + 1035 1194 71645 12 6 5 101 21 20 21 chain 108560 chr14 107043718 + 66455403 66456945 L1MA3 4352 + 1890 3423 17243 72 0 2 46 0 1 32 4 1 14 9 10 105 0 1 77 0 4 58 1 0 20 9 0 151 10 5 24 6 1 41 2 1 34 1 0 440 15 16 70 0 1 92 4 3 145 0 9 21 3 0 36 chain 30506 chr14 107043718 + 66456945 66457365 MLT2A1 477 + 0 466 41562 137 2 4 28 0 4 103 7 6 42 1 0 66 1 43 33 chain 3347 chr14 107043718 + 66460776 66460837 MADE2 80 + 8 77 96623 16 1 11 13 3 1 28 chain 35583 chr14 107043718 + 66465512 66465960 MER4A1 472 + 0 472 37668 14 0 2 154 0 1 55 5 26 220 chain 185531 chr14 107043718 + 66469026 66471563 MER4-int 2692 + 74 2680 10320 7 1 0 9 0 1 8 2 0 5 5 6 34 21 22 139 0 3 36 4 6 62 0 5 112 10 19 175 0 2 33 0 22 532 2 0 16 2 0 114 0 1 8 0 2 20 0 2 127 2 3 35 0 2 5 1 0 105 0 1 28 0 11 98 7 9 242 12 13 35 1 2 25 1 2 52 5 7 82 0 2 193 5 7 119 chain 34647 chr14 107043718 + 66471585 66472030 MER4A1 472 + 2 472 38256 12 0 2 48 0 1 170 6 27 73 0 1 136 chain 63490 chr14 107043718 + 66473905 66474614 L1PA4 6152 + 4478 5187 25526 709 chain 3075 chr14 107043718 + 66546829 66546865 MER51A 677 + 357 393 99034 36 chain 5293 chr14 107043718 + 66551165 66551266 Tigger1 2417 + 2223 2323 84231 29 1 0 4 1 0 38 14 15 14 chain 440176 chr14 107043718 + 66587761 66593311 L1PA7 6471 + 824 6470 4574 532 0 1 162 0 1 18 0 1 94 7 9 130 2 6 674 8 6 100 6 93 43 4 1 18 31 0 35 0 3 298 1 2 47 1 5 149 13 15 121 0 1 73 0 14 37 0 1 36 4 8 34 14 15 428 2 0 220 3 4 470 6 7 329 1 0 128 0 4 456 0 1 55 0 1 185 5 7 234 1 2 254 9 5 59 1 2 12 chain 85294 chr14 107043718 + 66665299 66666255 L1PA5 6144 + 5183 6138 20571 496 1 0 459 chain 13624 chr14 107043718 + 66687140 66687291 L1P1 4361 + 2510 2661 64131 151 chain 26621 chr14 107043718 + 66688753 66689075 L1PA6 6164 + 5844 6161 46798 309 5 0 8 chain 464121 chr14 107043718 + 66701518 66707763 L1PA8A 6298 + 80 6279 4016 19 3 0 20 19 10 16 5 3 9 2 1 11 2 1 7 0 1 11 2 0 15 2 0 4 1 0 13 47 38 7 2 0 33 10 9 22 8 0 77 2 0 19 1 0 5 6 4 78 1 0 295 4 0 182 0 2 98 11 15 22 3 0 135 0 3 11 25 36 262 0 2 97 5 0 168 1 4 102 0 1 145 0 7 266 0 1 17 1 2 124 32 0 60 1 0 122 7 8 58 10 14 197 0 4 207 18 17 60 1 0 115 7 6 500 0 1 468 0 2 142 0 1 96 0 2 233 1 0 261 0 1 4 1 0 328 0 1 69 0 3 90 7 3 414 11 10 63 7 6 105 16 17 81 chain 9678 chr14 107043718 + 66726739 66726952 Tigger4b 360 + 29 245 71103 12 23 17 54 13 24 28 1 0 19 19 18 44 chain 11942 chr14 107043718 + 66732843 66732993 THE1D-int 1627 + 1476 1627 66935 13 0 1 23 1 0 82 0 1 31 chain 99924 chr14 107043718 + 66777029 66778185 L1P1 4361 + 3190 4341 18310 57 6 4 900 1 0 154 1 0 23 2 1 12 chain 4121 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66893375 L1P1 4361 + 16 185 63398 169 chain 187945 chr14 107043718 + 66893375 66895506 L1PA5 6144 + 3994 6132 10212 697 4 6 420 0 1 173 0 4 837 chain 10018 chr14 107043718 + 66902941 66903055 L1P3 4156 + 3646 3761 70380 17 0 1 97 chain 56868 chr14 107043718 + 66921531 66922229 L1PB1 5432 + 3787 4484 27309 690 1 0 7 chain 7605 chr14 107043718 + 66945420 66945617 L1PB1 5432 + 5250 5422 75854 31 1 0 19 26 12 14 12 9 11 2 0 24 1 0 17 5 4 13 1 0 8 1 0 6 1 0 4 chain 34316 chr14 107043718 + 66956742 66957124 L1PA3long 6157 + 5775 6157 38483 382 chain 261520 chr14 107043718 + 67051244 67054668 L1PA10 4194 + 715 4150 7926 263 0 1 44 0 3 81 4 0 49 7 8 115 9 8 4 0 1 48 1 0 237 0 4 33 8 7 131 7 11 23 8 2 25 8 1 16 0 4 62 0 13 106 0 4 140 1 0 5 6 7 24 0 1 285 0 1 60 16 6 71 0 1 33 12 0 4 4 0 19 0 4 21 0 4 203 0 1 326 0 1 206 0 1 199 4 6 30 0 1 58 0 8 106 0 1 230 1 0 34 1 0 4 5 3 27 chain 65243 chr14 107043718 + 67070898 67071641 L1PA5 6144 + 5399 6142 25118 743 chain 13227 chr14 107043718 + 67094834 67095019 Tigger3c 601 + 343 528 64736 98 9 9 78 chain 56739 chr14 107043718 + 67095319 67095939 L1PA3long 6157 + 5537 6157 27341 620 chain 3593 chr14 107043718 + 67116415 67116502 L1PB1 5432 + 5340 5422 94487 6 2 0 24 23 21 13 1 0 18 chain 59820 chr14 107043718 + 67126605 67127266 L1PA2 6032 + 5378 6032 26427 505 7 0 149 chain 28858 chr14 107043718 + 67150160 67150466 AluYa8 305 + 0 305 43540 292 1 0 13 chain 4715 chr14 107043718 + 67202101 67202158 MER63D 473 + 49 106 87174 57 chain 7485 chr14 107043718 + 67260226 67260314 5S 121 + 1 89 76163 88 chain 7301 chr14 107043718 + 67289347 67289460 MER2 342 + 164 278 76662 43 9 10 61 chain 5661 chr14 107043718 + 67340102 67340173 HY1 111 + 39 111 82504 67 0 1 4 chain 100063 chr14 107043718 + 67340702 67342181 SVA_A 1864 + 25 1845 18291 22 5 0 47 0 11 72 2 0 494 15 12 37 3 0 27 172 466 36 0 37 29 4 1 29 3 19 120 3 1 316 0 1 43 chain 34715 chr14 107043718 + 67443861 67444337 MER4A1 472 + 0 472 38215 231 11 21 161 16 1 36 0 1 21 chain 13942 chr14 107043718 + 67450098 67450289 THE1B 368 + 183 368 63685 13 9 3 92 0 1 72 1 0 4 chain 125924 chr14 107043718 + 67450289 67451868 THE1B-int 1605 + 0 1605 14572 204 0 1 225 1 26 250 2 1 466 12 13 419 chain 11793 chr14 107043718 + 67452384 67452529 THE1B 368 + 210 356 67226 81 0 1 64 chain 30871 chr14 107043718 + 67455892 67456317 L1PA15 4387 + 3584 4013 41250 40 1 12 16 4 6 155 2 0 18 5 0 8 1 2 49 2 0 44 1 0 79 chain 10679 chr14 107043718 + 67596728 67596863 MER31A 484 + 217 351 69078 41 1 0 93 chain 4845 chr14 107043718 + 67613862 67613923 MER39 703 + 548 609 86457 61 chain 6902 chr14 107043718 + 67625106 67625229 L1MB7 1623 + 628 758 77942 15 4 6 31 15 20 58 chain 14416 chr14 107043718 + 67680857 67681494 L1MB8 1703 + 344 605 63011 69 27 32 39 386 4 48 5 6 63 chain 6684 chr14 107043718 + 67730293 67730371 MER33 330 + 13 91 78686 78 chain 12064 chr14 107043718 + 67742123 67742391 L1MB3 1562 + 1309 1555 66732 13 0 5 24 1 0 44 73 46 13 4 6 64 1 0 31 chain 547495 chr14 107043718 + 67868073 67874097 L1PA3long 6157 + 0 6156 896 152 1 2 627 0 128 981 0 1 3400 0 1 91 0 1 772 chain 2794 chr14 107043718 + 67893282 67893317 L1MC4a 1092 + 1057 1092 101677 35 chain 6372 chr14 107043718 + 68040816 68040896 MER5A1 166 + 86 165 79771 40 1 0 39 chain 64540 chr14 107043718 + 68048621 68049360 L1PA5 6144 + 5397 6137 25302 551 0 1 188 chain 63022 chr14 107043718 + 68114876 68115558 L1PA2 6032 + 5350 6032 25618 682 chain 23784 chr14 107043718 + 68136293 68136604 AluSc 308 + 0 308 51134 59 4 0 189 17 18 42 chain 111730 chr14 107043718 + 68221096 68222663 L1PB1 5432 + 3865 5422 16845 4 0 1 127 7 8 57 0 5 269 0 5 216 2 0 64 0 2 11 4 0 73 1 0 255 0 14 138 3 0 24 1 0 8 1 0 12 16 10 49 6 5 15 1 0 45 1 0 14 49 36 14 2 0 24 1 0 21 1 0 31 chain 31217 chr14 107043718 + 68303095 68303468 L1PA7 6471 + 6084 6470 40956 214 5 18 154 chain 28971 chr14 107043718 + 68373372 68373784 L1PA8 5853 + 5445 5853 43374 77 0 2 40 1 0 44 2 0 23 7 8 43 1 0 8 1 0 16 2 1 4 0 1 28 2 1 19 1 0 93 chain 3073 chr14 107043718 + 68519150 68519186 MER63A 208 + 172 208 99073 36 chain 135591 chr14 107043718 + 68581572 68583160 L1PA7 6471 + 4875 6470 13479 74 1 0 665 0 3 211 0 1 37 10 11 383 0 3 207 chain 6258 chr14 107043718 + 68612514 68612594 L1MB3 1562 + 1339 1418 80132 13 1 0 66 chain 5296 chr14 107043718 + 68751691 68751758 MADE1 96 + 1 96 84214 40 0 28 27 chain 3259 chr14 107043718 + 68772603 68772643 MER96 175 + 116 156 97381 40 chain 6156 chr14 107043718 + 68841594 68841672 MLT1B 390 + 295 373 80514 78 chain 36375 chr14 107043718 + 68852227 68852785 LTR10E 629 + 0 601 37156 18 0 1 76 26 79 121 1 0 29 6 5 47 1 0 72 4 0 88 1 0 12 25 22 31 chain 27147 chr14 107043718 + 68859132 68859495 MER34B 572 + 160 515 46052 7 1 0 44 0 1 83 1 0 75 7 0 145 chain 45300 chr14 107043718 + 68865177 68865842 LTR10E 629 + 0 629 31419 18 1 0 38 0 4 104 0 2 11 63 0 93 1 27 72 8 7 185 9 7 54 1 0 7 chain 26177 chr14 107043718 + 68886510 68886807 AluSc5 308 + 0 294 47462 68 3 0 226 chain 18322 chr14 107043718 + 68910665 68911029 THE1B 368 + 6 368 58332 6 1 0 78 26 27 60 27 24 9 0 4 10 30 28 54 7 6 56 chain 34621 chr14 107043718 + 68932055 68932507 MLT2A2 560 + 0 560 38270 180 1 0 122 2 111 147 chain 208613 chr14 107043718 + 69162798 69166018 L1MA2 4263 + 1210 4098 9394 109 9 14 136 0 1 54 30 34 411 2 1 221 0 1 329 14 12 21 1 5 85 3 0 6 0 1 154 14 25 44 5 0 188 0 4 500 1 0 6 1 2 9 22 18 25 0 3 33 1 0 134 20 17 27 320 0 64 34 13 39 12 10 92 7 0 17 0 3 20 chain 4573 chr14 107043718 + 69283640 69283692 MIR 256 + 64 116 87951 52 chain 23156 chr14 107043718 + 69284704 69285035 THE1C 375 + 0 339 52135 40 0 5 51 18 19 66 2 1 31 7 10 116 chain 12976 chr14 107043718 + 69472622 69472780 Tigger3a 397 + 163 321 65145 158 chain 33795 chr14 107043718 + 69472781 69473267 MER1A 529 + 0 529 38852 17 0 1 62 15 55 82 6 7 175 0 3 58 16 14 55 chain 19525 chr14 107043718 + 69583438 69583779 MSTA 426 + 0 337 56992 40 1 2 57 8 9 9 0 1 25 6 5 11 10 6 39 4 0 8 0 26 11 24 0 88 chain 6561 chr14 107043718 + 69619314 69619391 MER41A 554 + 390 468 79118 37 0 1 40 chain 14253 chr14 107043718 + 69679491 69679694 MER30 238 + 0 238 63263 40 1 23 36 3 0 5 2 0 14 2 20 100 chain 13591 chr14 107043718 + 69750825 69750980 MER107 203 + 5 162 64178 8 0 2 147 chain 11362 chr14 107043718 + 69761121 69761273 MSTD 398 + 0 172 67982 138 1 21 13 chain 24893 chr14 107043718 + 69800260 69800614 L1PREC2 3366 + 230 578 49449 17 1 0 10 2 0 32 18 17 94 1 0 68 1 0 110 chain 34442 chr14 107043718 + 69811462 69811900 LTR3A 482 + 3 464 38405 46 0 1 72 0 1 72 0 14 28 1 2 135 0 7 71 1 0 12 chain 6339 chr14 107043718 + 69861115 69861278 MER53 195 + 8 164 79867 65 14 20 11 47 34 26 chain 4302 chr14 107043718 + 69871868 69871945 MER65A 464 + 0 91 89492 27 15 29 35 chain 119690 chr14 107043718 + 69902598 69903919 SVA_C 1631 + 14 1631 15580 6 0 1 194 1 0 553 0 296 567 chain 14341 chr14 107043718 + 69967391 69967574 MER30 238 + 26 238 63129 82 1 30 100 chain 23591 chr14 107043718 + 70049351 70049641 L1PA7 6471 + 6178 6470 51447 135 7 9 148 chain 7265 chr14 107043718 + 70074699 70074838 MER96B 391 - 32 168 76783 18 7 6 40 1 0 4 11 9 43 0 1 15 chain 29322 chr14 107043718 + 70183691 70184100 MER83 447 + 2 405 42842 222 10 17 59 5 1 68 10 1 35 chain 23591 chr14 107043718 + 70204972 70205317 THE1B 368 + 0 368 51448 15 2 0 25 0 5 127 2 1 76 2 0 5 18 41 73 chain 31117 chr14 107043718 + 70237814 70238198 LTR3 431 + 29 422 41045 86 0 9 298 chain 28300 chr14 107043718 + 70243118 70254061 L1PA7 6471 + 5631 6470 44416 180 10103 0 655 1 0 4 chain 65896 chr14 107043718 + 70255048 70256182 LTR12C 1709 + 442 1709 24980 18 0 1 12 69 15 164 0 278 144 0 49 60 0 1 31 20 13 112 5 7 72 103 0 175 33 0 18 14 13 84 chain 7937 chr14 107043718 + 70255761 70255858 LTR12C 1709 + 1424 1521 72029 81 1 0 12 0 1 3 chain 129029 chr14 107043718 + 70263392 70265268 THE1A-int 1579 + 0 1567 14146 1019 0 2 85 4 5 160 312 0 296 chain 28020 chr14 107043718 + 70286771 70287125 THE1A 353 + 0 353 44831 110 1 0 243 chain 3207 chr14 107043718 + 70292311 70292355 MER4A1 472 + 0 45 97842 24 1 2 19 chain 173420 chr14 107043718 + 70311201 70314476 MER4-int 2692 + 234 2688 10933 255 0 127 5 0 1 92 3 5 86 335 0 54 1 2 30 6 0 27 1 2 61 1 0 187 0 26 57 1 0 147 0 29 40 5 10 35 12 28 43 311 0 21 5 7 163 7 6 238 4 0 131 373 0 212 0 1 262 0 1 4 3 2 57 chain 19537 chr14 107043718 + 70313570 70313926 THE1B 368 + 0 356 56975 104 18 13 52 44 78 7 28 0 54 1 0 48 chain 40014 chr14 107043718 + 70314490 70314961 MER4A1 472 + 2 472 34649 176 1 0 294 chain 160203 chr14 107043718 + 70345365 70348094 HERVH48-int 3304 + 100 3245 11738 10 2 0 6 7 3 7 2 0 5 0 4 8 2 0 10 45 34 11 2 0 23 1 0 35 12 0 22 1 0 8 11 6 4 1 0 66 6 2 8 1 0 68 1 0 14 6 0 13 9 3 78 2 1 10 3 1 66 8 0 3 1 0 17 4 0 17 1 0 4 3 1 67 8 6 18 1 6 10 1 0 16 0 588 99 0 3 89 1 0 79 0 1 9 1 0 113 4 5 160 2 1 177 0 17 62 1 0 21 1 0 66 1 0 13 1 0 47 1 0 229 1 0 3 1 0 19 1 0 44 1 0 3 1 0 18 2 0 25 2 0 17 2 0 7 2 0 11 134 98 27 3 0 8 11 5 26 13 5 9 1 0 23 2 0 6 1 0 44 1 0 3 2 0 53 0 2 13 63 47 66 92 67 26 chain 27746 chr14 107043718 + 70350094 70350485 MER48 407 + 0 407 45256 30 0 1 4 1 0 5 6 2 91 0 20 13 0 2 26 14 13 148 1 0 52 chain 23475 chr14 107043718 + 70359989 70360306 AluSq10 312 + 0 304 51626 16 11 4 100 7 0 54 8 9 121 chain 84758 chr14 107043718 + 70392927 70393962 L1PA8 5853 + 4807 5847 20670 43 0 6 153 2 0 71 0 1 52 0 7 339 0 1 84 1 0 44 2 0 14 2 0 57 1 0 9 1 0 55 1 0 17 1 0 9 0 1 77 chain 3816 chr14 107043718 + 70402872 70402997 MER34C_ 573 + 165 311 92739 37 64 85 24 chain 4373 chr14 107043718 + 70405385 70405440 MADE1 96 - 0 96 89038 12 0 41 43 chain 48707 chr14 107043718 + 70419416 70420044 MER41B 635 + 0 635 30047 121 4 8 36 7 9 334 0 1 126 chain 11237 chr14 107043718 + 70443815 70443985 MER4-int 2692 + 2512 2692 68190 29 3 1 21 6 16 51 1 3 59 chain 547792 chr14 107043718 + 70475203 70482849 L1PA2 6032 + 0 6030 876 74 0 1 181 1 0 1469 1612 0 1074 18 0 483 0 3 18 0 11 113 0 1 391 1 0 2211 chain 138023 chr14 107043718 + 70476943 70478540 SVA_C 1631 + 0 1631 13267 18 0 11 577 6 0 44 0 40 125 11 7 5 0 2 23 4 0 38 0 1 19 1 0 714 5 0 7 chain 45757 chr14 107043718 + 70494423 70495127 L1MA1 4479 + 3505 4189 31185 8 2 0 29 0 9 165 1 0 19 2 0 20 1 0 71 1 0 7 21 19 7 1 0 88 1 0 5 3 0 126 1 0 29 2 0 35 1 0 9 1 0 11 20 10 17 chain 535508 chr14 107043718 + 70501320 70507441 L1PA5 6144 + 0 6135 1594 723 1 0 712 0 4 317 0 1 27 0 1 110 0 1 1013 0 1 46 0 1 270 2 1 168 1 12 363 0 1 574 0 2 130 0 2 741 2 1 803 8 0 110 chain 65762 chr14 107043718 + 70507462 70508641 L1PA8 5853 + 5000 5853 25010 9 2 0 211 348 27 278 0 3 34 1 0 47 2 0 70 1 0 61 2 1 19 3 2 91 chain 32689 chr14 107043718 + 70510510 70510963 L1PA7 6471 + 6063 6468 39774 97 47 0 147 0 7 7 8 0 147 chain 58363 chr14 107043718 + 70533048 70533760 L1PA8 5853 + 5142 5847 26845 422 1 0 44 2 0 71 16 14 51 1 0 16 1 0 87 chain 18536 chr14 107043718 + 70536569 70536986 LTR19A 502 + 2 430 58064 18 28 27 106 37 100 22 40 2 101 44 31 21 chain 17733 chr14 107043718 + 70538959 70539157 MER11D 897 + 2 200 58970 198 chain 77216 chr14 107043718 + 70539161 70540032 MER11D 897 + 0 895 22262 118 0 1 474 1 24 278 chain 32829 chr14 107043718 + 70541349 70542517 LTR19-int 1103 + 124 1058 39646 7 1 0 18 40 0 8 0 19 21 35 29 29 28 6 31 28 23 9 5 0 40 8 0 88 6 1 23 54 25 47 1 17 11 4 0 19 147 116 8 1 0 51 43 14 10 1 0 10 4 1 17 2 0 4 1 0 35 41 16 15 31 15 15 1 0 45 19 7 26 1 0 10 23 6 19 4 2 9 3 1 11 chain 29159 chr14 107043718 + 70543857 70544333 LTR19A 502 + 0 502 43109 34 27 26 93 33 59 18 1 0 200 11 9 45 1 5 13 chain 17372 chr14 107043718 + 70545455 70545684 L1M1 2793 + 2452 2685 59392 149 0 6 22 1 0 44 1 0 12 chain 568234 chr14 107043718 + 70547296 70553322 L1HS 6032 + 6 6032 10 6026 chain 12030 chr14 107043718 + 70557671 70557869 MER30 238 + 0 238 66796 12 22 34 48 0 6 11 4 20 21 0 6 80 chain 12432 chr14 107043718 + 70585464 70585631 MER30 238 + 10 204 66093 105 1 23 25 0 5 36 chain 3361 chr14 107043718 + 70625112 70625206 LTR32 486 + 21 113 96476 34 12 17 12 23 16 13 chain 3152 chr14 107043718 + 70663372 70663512 MER20 218 + 56 213 98348 6 1 0 16 86 104 31 chain 3380 chr14 107043718 + 70731551 70731588 MER58A 224 + 162 199 96304 37 chain 84944 chr14 107043718 + 70743319 70744348 L1PA7 6471 + 5420 6469 20633 123 1 2 79 0 2 184 0 1 303 0 2 35 0 1 88 0 1 57 8 15 87 0 6 45 1 0 18 chain 721 chr14 107043718 + 70763835 70763903 Tigger3b 1229 + 278 349 65386 9 0 4 4 1 0 54 chain 28549 chr14 107043718 + 70763903 70764209 AluYb8 318 + 0 305 44039 132 1 0 173 chain 1920 chr14 107043718 + 70764864 70765045 Tigger3b 1229 + 585 775 65386 30 0 1 45 0 2 5 6 8 12 19 23 64 chain 6180 chr14 107043718 + 70815642 70815822 L1MA8 2339 + 2063 2268 80427 31 29 62 40 0 9 7 37 23 22 3 0 11 chain 39650 chr14 107043718 + 70853773 70854254 MER41A 554 + 0 490 34926 93 0 1 50 4 7 319 0 5 15 chain 18652 chr14 107043718 + 70855200 70855438 MER41-int 2638 + 2397 2636 57943 54 2 3 182 chain 5353 chr14 107043718 + 70857205 70857270 MER5A1 166 + 52 117 83943 65 chain 49647 chr14 107043718 + 70877071 70877625 L1PA5 6144 + 5440 5988 29702 451 2 1 89 5 0 7 chain 12886 chr14 107043718 + 70877625 70877767 L1PA5 6144 + 5993 6135 65277 142 chain 102006 chr14 107043718 + 70943152 70944673 THE1C-int 1605 + 0 1599 18061 16 1 2 92 0 54 169 3 0 107 14 21 207 0 1 23 63 73 246 11 9 16 47 48 16 0 3 11 2 0 5 0 2 22 16 17 79 0 2 40 15 18 300 chain 17579 chr14 107043718 + 70944691 70945033 THE1C 375 + 13 375 59148 33 1 7 16 16 17 23 14 15 55 51 63 133 chain 74205 chr14 107043718 + 70947363 70948440 MER11B 1079 + 0 1079 23031 221 0 4 138 5 6 29 0 1 124 0 1 138 14 13 43 1 0 14 32 22 16 15 17 7 0 2 24 5 6 41 0 1 16 4 5 83 0 1 78 1 0 28 chain 38497 chr14 107043718 + 70960424 70960876 L1P1 4361 + 3888 4341 35710 8 0 2 193 0 2 58 1 0 154 1 0 23 2 1 12 chain 3740 chr14 107043718 + 70969341 70969390 MamRep137 426 - 51 99 93338 5 1 0 43 chain 140356 chr14 107043718 + 71037709 71039234 L1PA2 6032 + 4503 6031 13072 865 0 3 660 chain 29850 chr14 107043718 + 71124206 71124614 LTR7 482 + 0 482 42187 69 8 46 109 0 1 33 0 32 17 0 1 111 12 14 49 chain 282512 chr14 107043718 + 71124623 71128340 HERVH-int 3825 + 7 3825 7358 328 1 0 195 1 0 11 1 0 4 0 1 24 1 0 10 1 0 10 122 0 13 16 10 5 1 0 12 4 0 6 0 42 5 2 0 13 2 1 15 21 0 67 0 1 4 2 0 442 15 0 203 9 0 11 15 17 13 1 0 282 0 2 25 0 1 292 22 27 117 1 2 531 1 2 16 0 12 267 33 35 39 8 218 260 0 2 69 0 8 148 chain 2405 chr14 107043718 + 71125210 71125237 HERVH-int 3825 + 472 499 89651 27 chain 2396 chr14 107043718 + 71125277 71125317 HERVH-int 3825 + 541 580 104179 29 2 1 9 chain 47079 chr14 107043718 + 71130672 71131303 MER41B 635 + 0 635 30621 128 0 1 69 7 4 93 0 2 154 18 17 81 0 5 81 chain 51930 chr14 107043718 + 71140373 71141031 PABL_A 660 + 0 660 28897 85 11 9 229 0 5 234 8 7 91 chain 77788 chr14 107043718 + 71147217 71148171 LTR13 1007 + 0 959 22146 73 2 0 53 4 0 8 0 7 240 4 5 308 3 5 116 0 1 143 chain 38913 chr14 107043718 + 71149751 71150250 MER9a3 513 + 0 513 35417 16 0 2 93 0 1 133 1 13 175 2 3 19 2 0 58 chain 3666 chr14 107043718 + 71152210 71152250 MSTA 426 - 44 84 93851 40 chain 103310 chr14 107043718 + 71167356 71168691 LTR12C 1709 + 0 1709 17915 290 4 6 39 1 44 41 5 6 38 4 5 287 1 2 36 11 327 103 11 4 94 1 19 272 13 12 84 chain 10846 chr14 107043718 + 71171739 71171909 L1PA8 5853 + 5693 5853 68782 47 31 21 92 chain 37184 chr14 107043718 + 71172124 71172607 MER75 514 + 33 513 36620 227 4 0 236 1 2 15 chain 28136 chr14 107043718 + 71174603 71175015 LTR8 732 + 0 412 44662 128 33 32 29 1 0 4 1 3 216 chain 19035 chr14 107043718 + 71206397 71206763 THE1B 368 + 0 368 57515 39 0 6 61 10 11 60 31 28 4 1 0 4 0 1 10 16 14 68 7 6 17 8 9 30 chain 5884 chr14 107043718 + 71231982 71232081 MER52D 1964 + 1164 1255 81543 41 23 15 35 chain 116495 chr14 107043718 + 71254111 71255547 LTR12C 1709 + 0 1709 16132 121 1 0 145 5 4 129 1 0 110 4 5 136 0 278 184 1 0 4 4 2 100 16 10 350 0 2 61 0 4 64 chain 114498 chr14 107043718 + 71268584 71270130 THE1C-int 1605 + 0 1594 16475 11 7 6 82 0 57 36 13 0 248 5 12 108 0 1 46 0 1 144 6 0 392 9 10 45 19 20 177 0 1 8 1 0 189 chain 18947 chr14 107043718 + 71505715 71506049 Tigger4b 360 + 53 360 57600 62 33 24 94 1 0 57 37 20 50 chain 170992 chr14 107043718 + 71678866 71680826 L1PA5 6144 + 1409 3380 11051 366 0 2 416 0 2 372 0 3 40 0 5 9 3 2 382 4 0 247 1 3 76 0 2 44 chain 8814 chr14 107043718 + 71706323 71706457 MER33 330 + 142 288 72966 30 5 8 66 1 0 7 0 10 25 chain 22928 chr14 107043718 + 71761660 71761937 AluSp 311 + 11 282 52473 40 6 0 231 chain 36382 chr14 107043718 + 71774897 71775334 MER4A1 472 + 0 472 37152 64 0 14 147 0 21 226 chain 17315 chr14 107043718 + 71785797 71786014 Tigger3a 397 + 139 366 59440 22 0 10 195 chain 6800 chr14 107043718 + 71789309 71789414 MER96B 391 + 222 325 78325 51 4 3 18 1 0 31 chain 5861 chr14 107043718 + 71806001 71806070 MSTC 436 + 367 436 81642 69 chain 374760 chr14 107043718 + 71807303 71811687 L1PA6 6164 + 1796 6162 5573 529 15 0 71 9 0 412 0 3 378 0 1 508 4 1 1333 0 1 110 5 6 759 1 0 4 0 1 205 1 2 31 0 2 9 chain 407906 chr14 107043718 + 71856665 71862100 L1PB1 5432 + 38 5404 5047 14 1 2 37 1 2 351 3 0 54 0 1 45 1 0 7 5 6 49 5 6 83 0 1 65 1 2 260 10 10 28 1 0 20 0 1 40 1 0 273 1 0 4 11 0 931 1 0 183 10 14 37 0 1 276 4 1 20 11 8 111 0 1 752 14 0 86 5 21 365 1 0 306 4 9 100 0 2 80 0 2 100 0 1 80 0 2 215 59 11 24 1 0 9 1 0 9 6 2 9 2 0 52 3 2 16 1 0 43 1 0 16 1 0 4 20 9 18 6 10 9 2 0 24 1 0 21 1 0 13 chain 8713 chr14 107043718 + 71869952 71870064 MSTD 398 + 286 398 73184 112 chain 125477 chr14 107043718 + 71879808 71881375 THE1B-int 1605 + 0 1594 14634 194 0 1 235 1 26 70 0 1 4 0 1 185 1 0 877 chain 79068 chr14 107043718 + 71887054 71888136 MER11A 1151 + 0 1146 21851 59 1 100 71 1 0 64 4 0 149 0 1 94 0 1 145 5 6 120 0 26 26 43 0 22 18 0 36 0 1 60 13 14 151 chain 22191 chr14 107043718 + 71999571 71999914 MSTA 426 + 57 405 53576 84 12 18 53 6 10 23 1 0 95 4 5 21 6 1 38 chain 44885 chr14 107043718 + 72036948 72037555 LTR12 884 + 0 873 31649 54 0 39 7 0 66 165 0 47 96 3 0 74 0 103 92 5 13 55 12 18 44 chain 19794 chr14 107043718 + 72067183 72067478 L1PA8 5853 + 5565 5853 56688 43 2 0 71 2 1 12 10 8 40 2 1 17 4 3 92 chain 3548 chr14 107043718 + 72067927 72067971 MER5A1 166 + 95 139 94869 44 chain 37575 chr14 107043718 + 72160943 72161396 L1PA7 6471 + 6012 6470 36351 234 0 6 197 1 0 21 chain 11856 chr14 107043718 + 72162636 72162780 L1PB1 5432 + 4956 5100 67101 144 chain 10617 chr14 107043718 + 72162871 72163026 L1PB1 5432 + 5134 5281 69192 22 2 0 3 2 0 9 2 0 52 2 1 15 1 0 45 chain 7269 chr14 107043718 + 72163066 72163188 L1PB1 5432 + 5308 5422 76771 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 chain 43490 chr14 107043718 + 72249768 72250251 L1PA2 6032 + 5547 6030 32460 483 chain 116131 chr14 107043718 + 72283713 72285237 THE1B-int 1605 + 0 1600 16205 429 1 26 43 9 14 117 8 17 39 8 25 133 3 17 116 1 0 180 0 1 57 0 6 380 chain 21350 chr14 107043718 + 72302768 72303106 THE1B 368 + 0 368 54701 14 0 2 153 1 0 6 25 28 11 0 4 6 7 6 12 1 0 64 1 25 37 chain 25919 chr14 107043718 + 72356560 72356930 THE1C 375 + 0 374 47835 46 5 0 138 3 2 39 7 8 35 0 10 71 1 0 25 chain 40132 chr14 107043718 + 72399798 72400261 L1PA4 6152 + 1396 1860 34568 328 0 1 135 chain 23467 chr14 107043718 + 72421965 72422277 THE1B 368 + 60 368 51641 105 10 7 9 1 0 187 chain 26237 chr14 107043718 + 72490073 72490428 THE1B 368 + 0 368 47367 44 0 15 48 13 14 51 2 1 22 2 0 173 chain 9054 chr14 107043718 + 72507255 72507470 MLT1C 463 + 237 463 72436 18 75 87 85 5 4 32 chain 9273 chr14 107043718 + 72696807 72696940 MER5A 189 + 56 189 71969 70 10 9 6 0 1 47 chain 8431 chr14 107043718 + 72698272 72698377 MER47A 366 + 109 220 73842 15 0 6 90 chain 27066 chr14 107043718 + 72705054 72705552 MER1A 529 + 0 514 46174 18 1 0 4 20 41 89 80 75 104 6 1 118 9 10 31 0 5 18 chain 125526 chr14 107043718 + 72747990 72749556 THE1B-int 1605 + 0 1593 14623 430 1 26 529 0 1 466 7 8 133 chain 33402 chr14 107043718 + 72778181 72778669 MER1A 529 + 0 524 39174 43 0 1 36 26 63 26 3 0 6 1 4 282 12 10 53 chain 83930 chr14 107043718 + 72873128 72874074 L1PA4 6152 + 5196 6143 20823 329 0 1 4 2 1 472 1 2 138 chain 38145 chr14 107043718 + 72907465 72907924 MER41A 554 + 0 469 35954 180 7 17 272 chain 6668 chr14 107043718 + 72962970 72963042 tRNA-Cys-TGY 72 + 0 72 78741 72 chain 32655 chr14 107043718 + 73127585 73128029 MER4A1 472 + 14 462 39801 171 19 20 164 1 4 89 chain 23411 chr14 107043718 + 73186118 73186395 AluSp 311 + 21 298 51741 277 chain 7610 chr14 107043718 + 73313310 73313512 Tigger4 2445 + 2229 2407 75845 39 2 1 17 5 4 11 22 19 40 20 14 5 1 0 17 12 0 11 chain 14597 chr14 107043718 + 73324862 73325174 LTR56 451 + 5 314 62802 24 5 6 18 73 72 9 1 2 62 8 4 112 chain 16428 chr14 107043718 + 73331581 73331899 THE1D 372 + 0 332 60477 47 3 0 20 18 19 36 16 17 27 28 27 26 3 19 94 chain 23761 chr14 107043718 + 73340795 73341165 THE1D 372 + 0 372 51179 135 59 60 133 0 1 43 chain 8015 chr14 107043718 + 73400135 73400256 L1MC1 2226 + 1931 2045 74852 50 7 2 12 2 0 50 chain 5274 chr14 107043718 + 73449097 73449176 MADE1 96 + 0 96 84315 23 5 22 51 chain 9443 chr14 107043718 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73989279 73989468 AluSx 319 + 0 188 63286 137 1 0 32 0 1 4 2 1 13 chain 16465 chr14 107043718 + 74017381 74017596 AluSp 311 + 84 300 60424 54 15 15 51 1 2 94 chain 42032 chr14 107043718 + 74125568 74126035 L1PA4 6152 + 5671 6138 33338 467 chain 5469 chr14 107043718 + 74228588 74228660 MER41B 635 + 511 615 83364 50 0 32 22 chain 24644 chr14 107043718 + 74452291 74452646 THE1B 368 + 0 368 49809 102 1 0 17 19 27 23 1 0 23 2 0 12 2 10 13 0 1 140 chain 27784 chr14 107043718 + 74469209 74469529 L1PA5 6144 + 5818 6143 45202 52 0 5 268 chain 3841 chr14 107043718 + 74530825 74530875 MLT1K 546 + 481 530 92557 44 1 0 5 chain 33150 chr14 107043718 + 74590024 74590752 L1PB3 3668 + 3072 3581 39405 219 1 0 51 0 8 39 13 12 41 0 1 29 229 12 12 1 0 7 1 0 15 1 0 10 3 1 37 7 3 12 chain 24381 chr14 107043718 + 74626557 74626852 AluSp 311 + 0 301 50199 77 0 6 218 chain 21389 chr14 107043718 + 74633939 74634209 AluSc5 308 + 6 277 54647 102 1 2 167 chain 4203 chr14 107043718 + 74928191 74928239 Tigger4a 237 - 189 237 90106 48 chain 131965 chr14 107043718 + 74993971 74996345 LTR12C 1709 + 0 1709 13828 104 7 5 98 1 9 93 0 1 4 1 0 400 802 0 123 1 0 274 1 0 6 2 0 107 0 4 291 0 131 59 chain 5161 chr14 107043718 + 74994679 74994741 LTR12C 1709 + 873 935 50715 62 chain 9121 chr14 107043718 + 74994743 74994848 LTR12C 1709 + 776 880 39442 61 1 0 43 chain 9623 chr14 107043718 + 74994848 74994990 LTR12C 1709 + 721 862 34393 116 1 0 25 chain 21971 chr14 107043718 + 74994990 74995400 LTR12C 1709 + 703 1112 33689 134 1 0 275 chain 2982 chr14 107043718 + 74995400 74995444 LTR12C 1709 + 1159 1203 34393 44 chain 3191 chr14 107043718 + 74995445 74995481 LTR12C 1709 + 837 873 37847 36 chain 48746 chr14 107043718 + 75021216 75022006 L1PA15 4387 + 3583 4327 30033 66 1 2 115 0 2 15 26 0 30 2 0 16 4 0 61 2 0 22 9 10 10 1 0 136 1 0 34 1 0 22 7 6 55 1 0 28 10 4 50 9 6 42 4 2 10 chain 30740 chr14 107043718 + 75102854 75103204 L1PA5 6144 + 5795 6144 41361 331 1 0 18 chain 6568 chr14 107043718 + 75115708 75115843 MER5A1 166 + 13 165 79089 52 29 39 20 7 14 27 chain 5483 chr14 107043718 + 75148837 75148899 MSTD 398 + 23 85 83298 62 chain 23537 chr14 107043718 + 75175479 75175758 L1PA5 6144 + 5872 6143 51526 263 8 0 8 chain 7448 chr14 107043718 + 75185271 75185414 MER21A 919 + 29 174 76249 52 42 45 32 1 0 16 chain 29795 chr14 107043718 + 75211413 75211732 AluYb8 318 + 0 316 42236 132 3 0 184 chain 29355 chr14 107043718 + 75374556 75375034 MLT2A2 560 + 0 560 42802 59 1 2 135 0 6 64 8 14 21 0 1 4 1 0 34 36 98 18 11 17 13 0 1 10 0 1 5 2 1 56 chain 16256 chr14 107043718 + 75377824 75380349 MSTD 398 + 0 383 60672 123 72 113 36 2184 0 48 20 21 42 chain 5087 chr14 107043718 + 75415563 75415702 MIR 256 + 40 181 85210 23 7 6 10 24 26 45 18 19 12 chain 26475 chr14 107043718 + 75432919 75433224 AluSp 311 + 0 311 47017 125 0 6 180 chain 5452 chr14 107043718 + 75433233 75433313 MADE1 96 - 0 96 83451 38 5 21 37 chain 8012 chr14 107043718 + 75604172 75604262 5S 121 + 0 90 74859 90 chain 18865 chr14 107043718 + 75681974 75682210 AluSc 308 + 65 300 57694 192 2 1 42 chain 83201 chr14 107043718 + 75694636 75695716 MER11B 1079 + 0 1079 20984 315 9 11 211 0 1 4 8 7 148 0 1 43 10 0 20 8 11 107 1 2 82 0 1 66 0 1 19 1 0 14 1 2 13 chain 15884 chr14 107043718 + 75792203 75792384 L1PA5 6144 + 5964 6141 61177 171 4 0 6 chain 3534 chr14 107043718 + 75826356 75826402 L1MB2 1706 + 1646 1693 94987 15 0 1 31 chain 4194 chr14 107043718 + 75930420 75930468 Tigger4a 237 - 189 237 90178 48 chain 11688 chr14 107043718 + 75944045 75944186 MER50 708 + 549 690 67415 141 chain 8370 chr14 107043718 + 75972240 75972355 MER85 139 + 0 126 73972 91 1 12 23 chain 15827 chr14 107043718 + 76023911 76024108 MER107 203 + 0 203 61250 162 0 6 35 chain 19237 chr14 107043718 + 76025226 76025581 L1PA13 3608 + 3167 3483 57311 69 42 24 13 2 0 62 1 0 61 2 0 25 21 10 13 2 0 4 2 0 20 1 0 15 chain 72882 chr14 107043718 + 76215131 76215925 L1PA2 6032 + 5234 6032 23339 740 0 4 54 chain 120130 chr14 107043718 + 76239648 76241712 L1PB2 3958 + 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1610 68198 127 chain 12388 chr14 107043718 + 76679292 76679677 MER41C 542 + 11 396 38428 38 0 1 116 23 23 9 0 1 4 1 0 25 5 0 82 5 7 18 0 2 59 chain 45146 chr14 107043718 + 76679690 76680242 MER41A 554 + 2 554 31493 141 1 0 59 0 1 351 chain 3829 chr14 107043718 + 76680242 76680361 MER41C 542 + 414 533 38428 119 chain 37157 chr14 107043718 + 76680714 76681194 LTR10F 562 + 0 562 36640 40 0 2 63 5 90 36 3 0 175 2 1 91 3 2 62 chain 533273 chr14 107043718 + 76744288 76752276 L1PA5 6144 + 3 6144 1694 761 0 1 525 10 0 559 1 0 1409 0 2 808 1 0 281 0 4 461 0 1 203 1 0 256 1940 99 629 1 0 142 chain 154914 chr14 107043718 + 76749583 76751385 SVA_D 2077 + 0 2076 12061 13 5 0 12 5 0 763 40 0 115 4 0 10 8 45 21 0 14 14 0 51 118 0 225 637 0 1 37 chain 95524 chr14 107043718 + 76821574 76822733 SVA_D 2077 + 963 2073 18839 28 1 0 45 0 2 144 98 0 170 0 49 458 1 0 214 chain 5402 chr14 107043718 + 76821795 76821890 SVA_D 2077 + 958 1055 37788 76 1 2 7 0 1 5 1 0 4 0 1 1 chain 6388 chr14 107043718 + 76825327 76825439 FordPrefect_a 431 + 323 431 79718 63 17 16 19 3 0 10 chain 22749 chr14 107043718 + 76899873 76900143 AluSp 311 + 8 278 52758 270 chain 20272 chr14 107043718 + 77072576 77072820 AluSp 311 + 48 292 56050 244 chain 3676 chr14 107043718 + 77177069 77177112 MER47A 366 - 167 210 93774 43 chain 20160 chr14 107043718 + 77294191 77294829 THE1B 368 + 0 368 56181 15 3 1 24 9 14 36 321 62 12 13 0 129 1 0 75 chain 24254 chr14 107043718 + 77513611 77513913 AluSp 311 + 0 300 50411 19 8 6 275 chain 24006 chr14 107043718 + 77516972 77517260 AluSp 311 + 8 299 50784 181 0 3 107 chain 24898 chr14 107043718 + 77601142 77601560 LTR7B 505 + 0 490 49435 105 0 10 69 35 11 14 1 89 67 1 0 21 5 7 48 14 13 23 3 1 12 chain 30126 chr14 107043718 + 77601621 77602095 HERVH-int 3825 + 45 512 41918 12 17 21 255 1 0 66 22 21 26 49 39 6 1 0 5 0 2 14 chain 128944 chr14 107043718 + 77746917 77748417 SVA_B 1603 + 25 1594 14156 17 3 0 154 1 0 438 0 40 163 5 41 41 5 1 355 0 1 318 chain 2883 chr14 107043718 + 77880961 77880991 MER117 194 + 47 77 100992 30 chain 4981 chr14 107043718 + 77941829 77941883 MLT1B 390 + 290 344 85745 54 chain 23728 chr14 107043718 + 77946570 77946936 THE1D 372 + 0 372 51234 20 6 7 4 1 0 10 34 39 106 0 2 7 0 1 31 1 0 133 1 0 12 chain 26370 chr14 107043718 + 77959668 77960028 THE1B 368 + 0 368 47161 44 0 15 113 10 9 10 7 1 176 chain 7698 chr14 107043718 + 77984115 77984238 MER5A1 166 + 0 125 75631 17 6 8 57 2 3 31 1 0 9 chain 23747 chr14 107043718 + 77986191 77986492 AluSg7 307 + 0 295 51201 106 10 3 17 0 1 168 chain 76398 chr14 107043718 + 78000903 78001922 MER11A 1151 + 0 1151 22464 70 0 3 12 0 91 24 1 0 94 4 0 149 0 1 90 12 13 126 16 18 54 0 4 70 6 40 61 0 1 230 chain 13292 chr14 107043718 + 78002361 78002526 THE1B 368 + 192 356 64637 101 1 0 63 chain 13364 chr14 107043718 + 78065235 78065416 MLT1A1-int 1737 + 1517 1701 64521 81 6 9 94 chain 22097 chr14 107043718 + 78260500 78260854 THE1B 368 + 0 368 53703 13 2 0 21 0 7 131 2 1 15 45 55 125 chain 8864 chr14 107043718 + 78380234 78380328 AluYb8 318 + 215 309 72841 94 chain 13223 chr14 107043718 + 78574904 78575235 THE1D 372 + 0 338 64741 37 67 65 64 61 78 70 8 0 24 chain 10014 chr14 107043718 + 78775393 78775580 MER30 238 + 31 238 70395 50 1 2 10 46 65 80 chain 10094 chr14 107043718 + 78824745 78824957 L1MA3 4352 + 4145 4322 70203 59 9 10 22 4 0 22 2 0 24 1 0 4 3 2 23 28 0 11 chain 22962 chr14 107043718 + 78831281 78831561 AluSg7 307 + 16 307 52423 30 0 10 75 0 1 175 chain 29009 chr14 107043718 + 78879957 78880266 AluYa5 310 + 0 308 43308 132 1 0 176 chain 111175 chr14 107043718 + 78881260 78882834 THE1C-int 1605 + 18 1605 16919 108 0 55 259 89 17 110 4 7 56 8 11 79 6 22 134 0 1 6 1 0 269 1 2 58 0 1 104 0 4 108 0 1 5 0 1 107 0 1 5 9 8 48 chain 28853 chr14 107043718 + 79053987 79054308 L1PA4 6152 + 5818 6139 43555 321 chain 15954 chr14 107043718 + 79071584 79071938 L1MA3 4352 + 4000 4325 61085 57 2 0 30 43 18 8 1 0 50 29 28 36 4 8 23 2 0 24 1 0 24 9 8 11 chain 5420 chr14 107043718 + 79114117 79114259 MER20 218 + 43 156 83603 4 1 0 13 59 31 65 chain 53006 chr14 107043718 + 79188722 79189299 L1PA3long 6157 + 5332 5909 28576 577 chain 6421 chr14 107043718 + 79224629 79225000 MLT1C 463 + 57 463 79600 25 45 74 5 3 0 10 4 8 14 2 0 9 1 0 6 43 11 19 131 171 54 chain 18839 chr14 107043718 + 79302546 79302888 THE1D 372 + 0 356 57728 128 1 5 11 85 95 117 chain 84324 chr14 107043718 + 79314060 79314943 L1HS 6032 + 9 892 20750 883 chain 191057 chr14 107043718 + 79385760 79387932 L1PA5 6144 + 3786 5963 10066 164 0 2 418 0 3 1315 2 1 185 11 12 77 chain 9886 chr14 107043718 + 79392573 79392688 L1PA7 6471 + 5691 5807 70646 18 0 1 97 chain 32109 chr14 107043718 + 79520678 79521048 L1PA7 6471 + 5720 6091 40265 134 0 1 236 chain 24941 chr14 107043718 + 79545860 79546215 THE1B 368 + 0 368 49367 44 0 15 107 19 17 9 0 2 20 5 4 75 1 0 75 chain 22210 chr14 107043718 + 79590106 79590413 THE1B 368 + 7 311 53539 165 4 3 25 2 0 28 1 3 71 2 0 9 chain 22806 chr14 107043718 + 79609825 79610096 L1PA7 6471 + 6187 6458 52653 271 chain 6012 chr14 107043718 + 79669714 79669788 MER5A1 166 + 14 88 81033 74 chain 40301 chr14 107043718 + 79706443 79707024 LTR14 556 + 0 556 34447 25 3 0 144 1 0 96 19 0 87 2 1 64 7 8 36 1 0 4 1 0 91 chain 128627 chr14 107043718 + 79752314 79753728 L1PA3long 6157 + 4742 6155 14203 558 1 0 855 chain 539768 chr14 107043718 + 79767760 79773787 L1PA3long 6157 + 0 6156 1353 153 1 2 621 0 128 5143 0 3 5 14 11 90 chain 70440 chr14 107043718 + 79905861 79906630 L1PA2 6032 + 5256 6025 23881 769 chain 109265 chr14 107043718 + 79935618 79936812 L1PA3long 6157 + 4693 5887 17148 1194 chain 22763 chr14 107043718 + 79936823 79937080 L1PA3long 6157 + 5899 6156 52733 257 chain 342022 chr14 107043718 + 79954538 79959180 L1PA11 4918 + 13 4628 6020 29 2 0 29 0 1 6 2 0 6 25 23 8 0 2 11 2 0 53 1 0 29 12 9 226 0 1 28 1 0 383 1 0 149 0 1 51 7 1 404 0 1 349 0 1 368 31 32 46 0 4 17 0 4 218 0 1 20 5 0 23 1 0 171 0 3 945 17 20 374 1 0 68 4 6 189 8 3 67 2 1 13 2 0 68 2 0 12 2 1 18 119 105 17 chain 472793 chr14 107043718 + 80028423 80033706 L1PA3long 6157 + 844 6157 3793 318 0 3 135 0 22 552 0 1 635 0 1 160 0 1 543 1 0 2087 1 2 602 0 1 107 0 1 142 chain 511604 chr14 107043718 + 80038806 80044977 L1PA6 6164 + 0 6156 2681 410 2 3 140 0 1 71 0 1 361 0 1 1052 1 2 292 1 0 222 20 4 347 1 13 269 0 1 116 7 10 385 1 3 117 1 2 534 1 0 11 0 4 127 1 1 238 2 0 102 5 4 327 30 4 144 0 4 833 chain 49604 chr14 107043718 + 80059318 80060090 L1PB2 3958 + 3025 3774 29724 61 7 8 213 2 0 56 17 11 26 0 2 12 10 6 12 8 6 13 5 0 59 2 0 35 1 0 73 1 0 60 7 6 70 2 0 20 chain 554836 chr14 107043718 + 80088528 80094678 L1PA3long 6157 + 0 6156 425 557 0 1 631 1 4 679 0 1 637 0 1 704 1 0 1456 0 1 1484 chain 51973 chr14 107043718 + 80096583 80097254 L1PA8 5853 + 5187 5853 28881 80 0 1 292 8 7 41 2 0 70 2 1 61 2 1 19 1 0 93 chain 12264 chr14 107043718 + 80172033 80172225 MER30 238 + 27 238 66344 62 0 8 14 5 0 9 8 27 48 4 1 42 chain 24959 chr14 107043718 + 80252978 80253312 THE1C 375 + 0 334 49350 116 1 0 60 9 10 148 chain 136444 chr14 107043718 + 80285963 80287634 SVA_D 2077 + 0 2077 13398 477 115 0 63 0 40 106 0 40 152 0 83 31 1 0 10 0 52 48 0 304 38 7 11 30 1 0 592 chain 71981 chr14 107043718 + 80297441 80298273 L1PA6 6164 + 5327 6154 23543 506 0 1 59 7 1 260 chain 70190 chr14 107043718 + 80329068 80329899 L1PA7 6471 + 5640 6470 23954 784 1 0 46 chain 70124 chr14 107043718 + 80340711 80341536 L1PA7 6471 + 5644 6467 23969 59 0 1 315 1 0 440 2 0 8 chain 9662 chr14 107043718 + 80381564 80381697 MER85 139 + 0 139 71139 96 8 14 29 chain 54954 chr14 107043718 + 80403484 80404195 LTR17 781 + 0 709 27891 59 1 0 102 1 0 13 6 10 42 2 0 101 1 0 212 2 1 169 chain 238398 chr14 107043718 + 80467814 80471971 HERVK22-int 3844 + 349 3844 8508 16 5 6 5 1 0 185 0 1 353 0 1 118 2 4 5 0 3 28 6 0 476 10 14 461 9 13 41 0 3 949 6 5 12 1 0 70 1 0 6 1 0 20 6 5 28 1 0 21 2 0 39 15 10 38 9 7 12 23 13 4 1 0 12 106 79 14 15 11 29 812 196 88 19 18 76 chain 261183 chr14 107043718 + 80486162 80489145 L1PA4 6152 + 1279 6152 7934 645 8 1 44 1 2 1211 0 1 139 0 1895 935 chain 58434 chr14 107043718 + 80513635 80514366 MER4E1 777 + 18 770 26831 523 1 9 42 0 13 27 6 7 44 1 0 87 chain 73984 chr14 107043718 + 80539363 80540401 MER11A 1151 + 0 1147 23095 64 0 99 53 13 12 64 10 6 142 4 6 92 0 1 145 0 1 92 8 1 43 8 41 22 18 0 36 0 1 60 6 7 6 0 1 152 chain 4429 chr14 107043718 + 80555535 80555617 LTR37A 408 + 305 386 88743 29 18 17 35 chain 363280 chr14 107043718 + 80590790 80595479 L1PA7 6471 + 2088 6466 5761 656 0 3 554 0 1 201 1 0 46 34 38 222 0 4 228 0 3 19 4 0 114 6 7 292 4 0 81 318 0 392 0 1 527 0 1 143 1 0 143 1 0 108 1 0 120 2 1 4 0 1 111 0 1 26 0 1 15 0 1 165 1 0 140 1 0 8 chain 107819 chr14 107043718 + 80622301 80623469 L1PA3long 6157 + 4989 6157 17350 1168 chain 16291 chr14 107043718 + 80635757 80636086 Tigger4b 360 + 47 356 60634 10 17 0 26 0 1 22 78 81 109 7 0 60 chain 38141 chr14 107043718 + 80652048 80652498 L1PA7 6471 + 5165 5614 35960 376 1 0 73 chain 7397 chr14 107043718 + 80652498 80652579 L1PA7 6471 + 5617 5698 76399 81 chain 51166 chr14 107043718 + 80652579 80653193 L1PA7 6471 + 5700 6318 29174 438 0 1 138 0 3 38 chain 11830 chr14 107043718 + 80653196 80653337 L1PA7 6471 + 6322 6463 67151 141 chain 29071 chr14 107043718 + 80673361 80673671 AluYa5 310 + 0 307 43232 132 3 0 175 chain 84421 chr14 107043718 + 80678832 80679991 MER11A 1151 + 0 1151 20730 176 8 0 116 14 9 87 0 1 295 1 2 57 0 4 58 2 1 5 26 0 18 0 1 4 10 68 7 35 0 26 0 2 214 chain 76602 chr14 107043718 + 80686220 80687237 L1PA10 4194 + 1220 2246 22414 123 0 5 52 1 2 398 17 3 220 8 10 54 0 15 144 chain 68842 chr14 107043718 + 80694053 80694915 L1PA8 5853 + 4987 5853 24250 23 0 2 209 0 8 274 0 1 60 1 0 44 2 0 70 2 1 9 1 0 52 2 1 19 1 0 93 chain 31483 chr14 107043718 + 80754935 80755378 MLT2A1 477 + 0 477 40746 168 9 6 9 0 1 20 0 1 169 0 1 10 21 55 37 chain 29611 chr14 107043718 + 80764216 80764534 AluYb8 318 + 0 317 42468 132 1 0 185 chain 74929 chr14 107043718 + 80799178 80800243 MER11A 1151 + 0 1151 22860 45 10 109 76 1 0 64 4 0 146 1 4 94 0 1 296 45 28 21 18 0 36 0 1 14 1 2 35 9 9 89 4 25 56 chain 59061 chr14 107043718 + 80801937 80802652 L1PA8A 6298 + 5580 6291 26646 592 3 0 75 6 5 39 chain 23200 chr14 107043718 + 80831911 80832253 THE1B 368 + 0 348 52081 18 0 1 98 0 1 51 1 0 27 39 44 108 chain 147592 chr14 107043718 + 80857950 80859556 L1PA3long 6157 + 4552 6156 12511 5 2 0 1599 chain 22059 chr14 107043718 + 80873685 80874078 THE1B 368 + 15 368 53750 104 95 54 29 2 0 123 2 5 38 chain 474024 chr14 107043718 + 80884970 80890788 L1PA8 5853 + 50 5849 3764 22 2 0 10 52 30 190 14 18 325 0 1 834 0 1 543 2 0 48 0 1 20 0 3 908 1 0 4 0 1 307 1 0 414 0 1 438 1 2 168 0 1 46 0 1 249 0 1 96 0 1 276 2 0 8 1 0 102 0 1 106 1 2 335 1 0 47 2 0 67 2 1 8 4 3 50 2 1 19 1 0 89 chain 148546 chr14 107043718 + 80929897 80931913 Charlie3 2679 + 17 2101 12453 17 35 34 27 14 15 154 27 28 107 0 62 29 13 17 229 0 1 73 1 4 249 0 1 102 0 1 498 0 4 175 4 0 6 6 0 86 4 5 160 chain 4782 chr14 107043718 + 81002176 81002232 MER46C 351 + 268 324 86784 56 chain 66017 chr14 107043718 + 81020364 81021226 Charlie3 2679 + 68 2671 24951 22 1 0 383 2 1749 375 21 16 58 chain 113825 chr14 107043718 + 81042947 81044377 L1PA11 4918 + 3026 4462 16576 137 0 4 352 0 2 172 1 2 148 4 3 464 0 4 14 1 0 67 1 0 12 2 0 55 chain 122151 chr14 107043718 + 81054380 81055976 THE1B-int 1605 + 0 1605 15170 13 5 7 23 2 3 117 0 1 185 0 1 5 16 0 77 10 35 860 14 8 261 0 1 8 chain 25311 chr14 107043718 + 81072751 81073018 AluYa5 310 + 36 303 48766 267 chain 43993 chr14 107043718 + 81075660 81076134 L1PA2 6032 + 5384 5858 32133 474 chain 42145 chr14 107043718 + 81081963 81082589 LTR76 689 + 7 679 33281 7 0 8 23 5 4 88 0 20 232 2 0 5 1 0 57 0 31 67 2 1 52 9 0 10 0 9 15 21 15 16 2 0 12 chain 545527 chr14 107043718 + 81114167 81120189 L1PA3long 6157 + 0 6157 1000 152 0 1 614 9 137 1793 1 0 821 4 12 1111 1 0 1516 chain 8606 chr14 107043718 + 81149396 81149502 MLT1B 390 + 284 390 73441 106 chain 7322 chr14 107043718 + 81157123 81157396 L1PB1 5432 + 5209 5430 76595 11 2 1 15 1 0 24 0 1 18 6 5 12 3 0 9 108 65 22 1 0 12 1 0 18 1 0 4 1 0 4 chain 123097 chr14 107043718 + 81207518 81209098 THE1A-int 1579 + 0 1571 15006 21 2 1 320 0 2 384 7 13 67 1 0 4 0 1 111 14 11 175 1 5 13 19 0 44 0 1 393 0 1 4 chain 25856 chr14 107043718 + 81209106 81209441 THE1A 353 + 0 333 47932 103 1 2 5 2 0 207 1 0 16 chain 3604 chr14 107043718 + 81230191 81230235 MLT2B2 565 + 449 493 94393 44 chain 10441 chr14 107043718 + 81263172 81263684 MER30 238 + 2 231 69535 22 7 25 48 328 30 6 7 0 5 2 0 14 0 6 73 chain 21522 chr14 107043718 + 81271981 81272239 AluY 311 + 40 300 54478 50 0 1 41 0 1 167 chain 14009 chr14 107043718 + 81326967 81327133 AluSz6 309 + 92 258 63584 166 chain 5136 chr14 107043718 + 81345773 81345836 MLT1B 390 + 327 390 84988 63 chain 96979 chr14 107043718 + 81356962 81358051 L1PA3long 6157 + 5059 6157 18658 10 1 0 76 0 1 574 0 12 420 3 0 5 chain 41864 chr14 107043718 + 81405764 81406297 MLT2A2 560 + 0 553 33448 396 12 23 53 0 9 72 chain 3055 chr14 107043718 + 81512285 81512321 MLT2D 439 + 403 439 99250 36 chain 46037 chr14 107043718 + 81512969 81513548 LTR12 884 + 0 869 31043 105 1 0 4 1 2 76 0 157 34 2 0 246 1 2 30 0 134 79 chain 442651 chr14 107043718 + 81541044 81546782 L1PA5 6144 + 463 6143 4526 42 55 46 30 84 8 109 76 79 41 15 32 59 5 4 4 0 1 36 38 13 45 28 29 4 1 0 103 5 7 10 24 15 301 5 45 112 0 1 64 1 0 277 0 1 324 0 1 4 9 12 1483 1 2 594 0 1 224 1 2 146 0 1 519 1 0 695 7 0 143 3 1 10 chain 221103 chr14 107043718 + 81546782 81549723 L1PA7 6471 + 3796 6459 9010 208 4 0 297 1 11 78 0 1 234 322 0 52 6 26 114 0 1 80 8 23 163 0 1 536 1 0 515 0 1 322 chain 5427 chr14 107043718 + 81553491 81553561 MLT1D 503 + 405 475 83571 70 chain 26172 chr14 107043718 + 81582675 81583053 LTR19A 502 + 0 452 47471 27 17 16 124 0 76 31 3 4 153 3 1 20 chain 31881 chr14 107043718 + 81585629 81586079 MER4A1 472 + 0 459 40431 15 8 10 15 0 7 93 1 0 51 5 9 6 4 0 24 1 0 169 1 3 57 chain 15430 chr14 107043718 + 81648576 81648869 L1MA2 4263 + 3818 4114 61747 14 11 13 24 25 36 53 9 7 93 7 0 47 1 0 9 chain 29033 chr14 107043718 + 81649621 81649933 AluYa5 310 + 0 310 43274 97 2 0 213 chain 12275 chr14 107043718 + 81672596 81672814 MER39B 650 + 429 640 66327 66 3 0 33 35 30 36 2 3 43 chain 15873 chr14 107043718 + 81683481 81683779 MER4A1 472 + 173 471 61195 48 77 67 60 0 1 23 0 7 22 1 3 67 chain 27907 chr14 107043718 + 81711935 81712369 LTR12F 595 + 0 595 45025 25 0 1 77 0 1 42 25 89 11 1 0 41 10 74 41 1 32 36 12 13 112 chain 97518 chr14 107043718 + 81769315 81770748 L1PB1 5432 + 4064 5427 18587 386 0 1 34 7 9 115 4 8 9 3 0 477 1 0 11 41 0 24 1 0 4 22 17 9 2 0 52 2 1 15 1 0 45 1 0 15 23 12 18 3 1 5 1 0 14 2 0 27 1 0 18 1 0 13 1 0 18 2 0 5 chain 13495 chr14 107043718 + 81795456 81795636 L1PA7 6471 + 6264 6465 64320 29 1 8 17 5 19 128 chain 463154 chr14 107043718 + 81859804 81864909 L1PA3long 6157 + 0 6152 4049 152 0 1 198 1 1045 929 0 1 3497 0 1 328 chain 36654 chr14 107043718 + 81891851 81892285 L1PA5 6144 + 5708 6140 36981 326 0 1 96 3 0 9 chain 13841 chr14 107043718 + 81893990 81894325 L1PB1 5432 + 5114 5423 63809 24 1 0 4 3 2 12 28 22 40 2 1 17 1 0 45 1 0 21 16 6 18 14 11 9 2 0 16 1 3 5 1 0 13 0 1 7 1 0 13 1 0 19 chain 25594 chr14 107043718 + 81958814 81959188 THE1C 375 + 0 375 48329 113 0 1 68 15 16 19 1 0 56 0 1 5 8 9 76 2 0 11 chain 11775 chr14 107043718 + 82014325 82014477 L1PB4 2604 + 2401 2553 67260 152 chain 10093 chr14 107043718 + 82021467 82021600 MER6A 605 + 326 457 70205 43 2 0 88 chain 8383 chr14 107043718 + 82089102 82089258 MER74A 558 + 237 381 73941 62 10 1 29 19 18 26 2 0 8 chain 24817 chr14 107043718 + 82142747 82143059 MSTA-int 1630 + 1306 1619 49565 306 0 1 6 chain 83960 chr14 107043718 + 82185441 82186461 L1PA8A 6298 + 5265 6290 20816 219 1 0 183 0 1 130 0 1 309 0 4 18 0 1 4 1 0 155 chain 43800 chr14 107043718 + 82189083 82189609 MER9a1 513 + 0 513 32253 183 12 1 272 2 0 57 chain 75372 chr14 107043718 + 82285574 82286448 MER11D 897 + 0 897 22753 14 0 1 446 1 0 132 1 24 280 chain 556738 chr14 107043718 + 82347549 82353568 L1PA2 6032 + 0 6030 312 481 1 9 462 0 3 593 0 1 3701 1 0 780 chain 48047 chr14 107043718 + 82377482 82378054 L1PA8A 6298 + 5718 6291 30277 504 0 1 68 chain 5380 chr14 107043718 + 82393672 82393738 L1PA8 5853 + 5581 5645 83796 29 2 0 35 chain 14568 chr14 107043718 + 82409454 82409616 L1PA4 6152 + 5991 6152 62827 156 1 0 5 chain 9396 chr14 107043718 + 82427666 82428100 MER34A 573 + 0 417 71714 61 0 1 4 1 0 13 210 193 10 57 0 10 3 59 43 0 1 22 chain 82924 chr14 107043718 + 82473697 82474597 L1PA3long 6157 + 4330 5230 21036 900 chain 57038 chr14 107043718 + 82483095 82483729 L1PA4 6152 + 5507 6140 27255 497 1 0 136 chain 4710 chr14 107043718 + 82514939 82515028 MER51A 677 + 311 380 87199 33 22 1 18 0 1 16 chain 43748 chr14 107043718 + 82524211 82525001 L1PB1 5432 + 4689 5427 32287 24 0 1 180 1 0 200 10 15 5 3 0 11 10 9 11 2 1 11 2 0 11 2 0 20 24 1 31 6 5 12 2 1 28 55 42 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 17035 chr14 107043718 + 82613969 82614261 MER47A 366 + 73 366 59773 190 28 44 15 24 9 35 chain 19576 chr14 107043718 + 82651936 82652148 L1PA2 6032 + 5813 6025 56927 212 chain 32702 chr14 107043718 + 82674383 82674797 MLT2A1 477 + 0 439 39760 161 12 9 9 0 1 24 0 1 190 3 29 15 chain 25552 chr14 107043718 + 82714527 82714875 L1PA8 5853 + 5512 5853 48398 49 2 1 48 2 0 68 2 1 9 1 0 51 3 2 19 1 0 93 chain 21502 chr14 107043718 + 82793191 82793462 AluSc8 310 + 16 291 54507 37 0 1 77 5 8 152 chain 188107 chr14 107043718 + 82870213 82872779 MER61-int 3695 + 1109 3695 10205 141 1 2 120 0 14 157 10 11 273 0 1 142 0 2 65 1 2 89 0 4 24 4 0 230 0 1 132 0 5 85 8 6 101 0 4 47 2 1 81 26 22 58 9 6 5 0 3 189 29 26 265 12 14 152 6 5 56 1 0 45 chain 42497 chr14 107043718 + 82930451 82930974 L1PA7 6471 + 5945 6470 33062 85 0 1 329 0 1 109 chain 42476 chr14 107043718 + 82994577 82995086 MER9a3 513 + 0 513 33077 202 12 3 102 0 13 193 chain 24232 chr14 107043718 + 83010361 83010707 THE1B 368 + 2 368 50445 26 2 0 12 0 15 120 2 1 40 0 7 45 13 14 86 chain 18672 chr14 107043718 + 83016263 83016517 L1PB1 5432 + 4827 5082 57928 168 3 2 17 5 7 61 chain 130289 chr14 107043718 + 83092201 83093785 LTR12C 1709 + 0 1709 14002 428 8 9 136 2 5 72 0 119 68 1 0 158 0 2 115 34 31 81 0 4 481 chain 26158 chr14 107043718 + 83104450 83104806 THE1B 368 + 0 368 47488 44 0 6 6 0 9 101 13 12 17 2 0 173 chain 18058 chr14 107043718 + 83285599 83285869 HSMAR2 1300 + 1039 1300 58601 37 5 3 13 0 1 26 1 0 119 0 3 5 1 0 21 9 0 33 chain 54695 chr14 107043718 + 83341798 83342419 L1PA5 6144 + 5523 6144 27975 621 chain 29997 chr14 107043718 + 83351967 83352443 MLT2A1 477 + 0 477 42058 127 18 0 14 1 2 25 0 4 23 12 13 16 0 1 160 6 0 7 28 42 33 0 4 6 chain 55335 chr14 107043718 + 83352549 83353274 HERVL-int 5654 + 4898 5654 27767 61 0 16 86 1 0 32 9 11 179 0 3 144 0 1 67 0 10 146 chain 44298 chr14 107043718 + 83434983 83435585 L1PB1 5432 + 3698 4275 31951 36 29 4 218 1 0 296 0 1 22 chain 39422 chr14 107043718 + 83438538 83439081 MLT2A2 560 + 0 560 35060 27 4 8 134 12 11 26 23 26 174 0 11 143 chain 3193 chr14 107043718 + 83444051 83444085 MER92A 404 + 334 368 97961 34 chain 3029 chr14 107043718 + 83556505 83556538 LTR12_ 688 + 163 196 99516 33 chain 24673 chr14 107043718 + 83582381 83582710 THE1A 353 + 0 327 49770 109 6 5 88 1 0 125 chain 10515 chr14 107043718 + 83583605 83583730 THE1A 353 + 216 341 69389 125 chain 538542 chr14 107043718 + 83639299 83645328 L1PA3long 6157 + 0 6157 1422 153 0 1 200 13 1 412 9 137 115 0 4 1296 0 1 239 0 1 1883 2 0 596 0 1 270 0 4 72 0 2 769 chain 124535 chr14 107043718 + 83667473 83669065 L1PA7 6471 + 4109 5707 14776 455 11 10 5 0 1 29 0 1 59 0 10 115 0 1 160 2 1 160 5 1 232 3 0 272 2 0 23 12 16 47 chain 29598 chr14 107043718 + 83775973 83776307 L1PA4 6152 + 5802 6136 42486 334 chain 4800 chr14 107043718 + 83796879 83796956 MLT1C 463 + 34 112 86701 19 9 10 49 chain 31647 chr14 107043718 + 83866050 83866478 LTR12F 595 + 0 595 40628 79 2 145 12 0 24 60 1 0 39 5 6 230 chain 4560 chr14 107043718 + 83885755 83885807 Tigger7 736 + 68 120 88020 52 chain 6405 chr14 107043718 + 83917260 83917337 MLT1A0 366 + 273 350 79657 77 chain 18528 chr14 107043718 + 83925160 83925518 MSTA 426 + 0 408 58073 94 30 54 49 60 66 33 1 21 91 chain 28611 chr14 107043718 + 83928629 83928983 THE1A 353 + 0 353 43933 110 1 0 243 chain 28102 chr14 107043718 + 83930559 83930913 THE1A 353 + 0 353 44715 107 4 3 243 chain 39360 chr14 107043718 + 83954464 83954974 MER41C 542 + 0 531 35107 49 0 1 102 1 0 159 0 21 199 chain 27847 chr14 107043718 + 83961578 83961993 LTR7 482 + 0 479 45110 54 23 61 109 8 40 41 0 1 59 1 2 80 9 1 31 chain 32467 chr14 107043718 + 83964378 83964898 LTR10F 562 + 13 562 39974 102 1 85 32 57 4 13 9 16 8 2 0 237 12 5 47 chain 74463 chr14 107043718 + 83981347 83982434 MER11A 1151 + 7 1151 22972 80 0 91 52 1 0 64 4 0 149 0 1 94 0 1 31 20 20 93 2 4 101 10 9 38 25 1 13 6 13 20 18 1 37 0 1 60 6 7 163 chain 25247 chr14 107043718 + 83984047 83984368 L1PB1 5432 + 4780 5103 48873 21 5 6 265 0 1 30 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1885 1998 74422 57 2 0 56 chain 11764 chr14 107043718 + 84440354 84440485 L1PA6 6164 + 6031 6162 67282 131 chain 20400 chr14 107043718 + 84454985 84455223 L1PA7 6471 + 6223 6461 55882 238 chain 45019 chr14 107043718 + 84484379 84484978 MER41B 635 + 10 611 31574 117 1 2 69 1 2 157 1 2 92 21 20 140 chain 14261 chr14 107043718 + 84598429 84598746 THE1C 375 + 0 336 63251 13 2 0 34 76 87 11 0 9 24 29 30 128 chain 125189 chr14 107043718 + 84715681 84717249 THE1A-int 1579 + 0 1574 14670 861 9 11 278 0 1 281 0 1 72 0 2 67 chain 3600 chr14 107043718 + 84739941 84739983 U6 107 + 0 42 94424 42 chain 5698 chr14 107043718 + 84765569 84765640 L1MB3 1562 + 436 507 82352 71 chain 2917 chr14 107043718 + 84799812 84799885 MER5A1 166 + 92 165 100693 24 1 0 4 24 25 20 chain 8699 chr14 107043718 + 84819506 84819606 L1PA8A 6298 + 6190 6290 73215 100 chain 47640 chr14 107043718 + 84861516 84862157 MER4E1 777 + 0 770 30422 106 5 6 38 4 14 104 7 117 156 1 9 220 chain 54154 chr14 107043718 + 84935768 84936482 L1PB1 5432 + 2569 3284 28170 270 16 17 138 5 6 242 7 6 36 chain 11032 chr14 107043718 + 84956077 84956198 L1HS 6032 + 5911 6032 68510 121 chain 21636 chr14 107043718 + 84997912 84998275 THE1B 368 + 0 368 54307 116 2 1 60 59 66 63 7 6 56 chain 15030 chr14 107043718 + 85013726 85014053 L1PB1 5432 + 5115 5413 62227 20 1 0 12 16 11 9 2 0 53 2 1 16 1 0 42 40 29 14 13 10 14 2 0 24 1 0 21 1 0 13 1 0 9 chain 37300 chr14 107043718 + 85046349 85046848 MER9a3 513 + 0 513 36547 18 0 2 231 17 10 13 0 18 141 5 6 74 chain 31340 chr14 107043718 + 85047157 85047530 THE1B-int 1605 + 1229 1605 40853 78 0 1 216 0 2 79 chain 261896 chr14 107043718 + 85161226 85164948 L1PB1 5432 + 19 5420 7915 344 8 9 27 9 8 49 0 1 392 0 15 537 2 0 5 11 0 122 6 4 154 1 0 88 2 0 6 0 2 21 0 1 234 0 2 73 0 6 148 4 5 159 1 7 152 2 0 6 0 2 199 0 1 189 0 1522 23 1 3 77 16 36 66 7 6 67 15 7 10 3 11 92 11 157 39 7 11 23 1 0 10 16 11 11 3 1 50 2 1 16 1 0 43 1 0 16 3 0 8 14 5 18 3 1 4 1 0 14 7 5 19 2 1 20 1 0 13 1 0 16 chain 4047 chr14 107043718 + 85193674 85194177 MLT1H1 527 + 11 494 91107 24 431 411 48 chain 15126 chr14 107043718 + 85214330 85214643 L1MA4 2864 + 1848 2159 62130 87 94 92 73 5 6 12 1 0 41 chain 6504 chr14 107043718 + 85271931 85272000 U3 216 + 0 69 79329 69 chain 81448 chr14 107043718 + 85288304 85289207 L1PA3long 6157 + 5212 6113 21345 686 2 0 215 chain 4068 chr14 107043718 + 85339241 85339287 MADE1 96 + 0 46 90958 46 chain 21631 chr14 107043718 + 85348307 85348562 AluY 311 + 27 283 54311 105 0 1 150 chain 12259 chr14 107043718 + 85374514 85374657 MLT1A 405 + 249 392 66355 143 chain 30573 chr14 107043718 + 85413401 85413859 L1PA8 5853 + 5390 5853 41503 35 0 2 92 5 6 39 1 0 45 2 0 68 28 26 22 8 16 19 1 0 93 chain 28080 chr14 107043718 + 85432638 85432939 AluYk11 308 + 0 301 44750 301 chain 3244 chr14 107043718 + 85447035 85447071 MADE1 96 + 49 85 97532 36 chain 3280 chr14 107043718 + 85449484 85449521 MLT1N2 510 + 454 491 97189 37 chain 87044 chr14 107043718 + 85449767 85450798 L1PA7 6471 + 5435 6469 20226 46 0 1 11 0 2 126 3 0 77 0 2 523 3 4 242 chain 50609 chr14 107043718 + 85487627 85488220 L1PA6 6164 + 5571 6162 29345 92 0 1 485 3 0 13 chain 16156 chr14 107043718 + 85494539 85494737 AluSg7 307 + 85 281 60803 47 2 0 149 chain 4341 chr14 107043718 + 85517495 85517551 MER58A 224 + 50 112 89229 29 0 6 27 chain 3034 chr14 107043718 + 85567418 85567451 MIR 256 + 8 41 99465 33 chain 20071 chr14 107043718 + 85689777 85690020 L1PA7 6471 + 6226 6467 56292 34 2 0 207 chain 33298 chr14 107043718 + 85834432 85834829 L1PA7 6471 + 6065 6464 39263 148 0 1 93 0 1 156 chain 26980 chr14 107043718 + 85844604 85844886 AluYa5 310 + 19 301 46296 282 chain 4354 chr14 107043718 + 85863528 85863606 MADE1 96 + 1 95 89146 31 1 17 46 chain 555565 chr14 107043718 + 85885595 85891616 L1PA2 6032 + 1 6030 380 1119 0 1 2020 1 6 954 1 3 1926 chain 18583 chr14 107043718 + 85937190 85937429 LTR8 732 + 11 267 58014 4 0 1 16 0 9 35 0 1 80 0 6 104 chain 46086 chr14 107043718 + 85945959 85946458 L1PA4 6152 + 5652 6151 31022 499 chain 100843 chr14 107043718 + 86024931 86026073 L1PA5 6144 + 4999 6144 18202 295 0 5 701 1 0 6 1 0 138 chain 9093 chr14 107043718 + 86067744 86067857 Tigger2 2703 + 2536 2649 72361 113 chain 22171 chr14 107043718 + 86092630 86092974 THE1B 368 + 0 348 53609 18 1 0 46 1 4 43 5 6 47 6 5 30 0 1 10 0 4 16 1 0 12 1 0 60 11 10 36 chain 122641 chr14 107043718 + 86170672 86172558 L1PB1 5432 + 3553 5422 15091 169 1 7 218 26 0 15 9 8 287 0 11 36 0 1 72 5 3 106 18 30 93 0 1 16 4 0 185 22 23 157 7 6 6 0 1 93 6 5 11 1 0 22 1 0 9 1 0 14 5 1 9 3 1 51 2 1 15 7 21 18 0 1 4 1 0 16 2 0 6 42 30 14 3 1 26 1 0 19 14 12 18 chain 66320 chr14 107043718 + 86174423 86175300 THE1B-int 1605 + 712 1592 24865 143 4 5 476 0 1 130 26 27 98 chain 146591 chr14 107043718 + 86186786 86188456 L1PA5 6144 + 4474 6143 12569 820 1 0 29 0 1 356 7 7 204 3 2 250 chain 17367 chr14 107043718 + 86197732 86197936 L1PA5 6144 + 5939 6143 59400 204 chain 4569 chr14 107043718 + 86218048 86218133 MADE1 96 - 1 96 87970 36 9 25 11 6 0 23 chain 106235 chr14 107043718 + 86245811 86246973 L1PA3long 6157 + 4981 6143 17538 1162 chain 45483 chr14 107043718 + 86255776 86256324 LTR6B 557 + 0 557 31316 51 0 5 303 0 1 41 0 1 7 1 0 86 0 1 4 0 1 33 0 1 22 chain 33684 chr14 107043718 + 86266565 86266999 L1PA10 4194 + 3733 4161 38940 344 2 0 39 3 0 34 1 0 11 chain 38067 chr14 107043718 + 86270465 86270910 LTR7C 471 + 0 449 36020 218 0 3 48 0 1 179 chain 552069 chr14 107043718 + 86312232 86318377 L1PA3long 6157 + 6 6157 604 357 1 2 161 4 0 622 0 6 419 3 6 4578 chain 16415 chr14 107043718 + 86373520 86373873 THE1C 375 + 0 375 60496 47 0 6 6 57 59 61 57 70 74 0 1 51 chain 32615 chr14 107043718 + 86400834 86401218 L1PA7 6471 + 6067 6451 39849 384 chain 21840 chr14 107043718 + 86407088 86407458 THE1D 372 + 0 372 54052 51 38 39 14 0 1 79 14 16 25 1 0 90 7 6 51 chain 43037 chr14 107043718 + 86417546 86418028 L1PA3long 6157 + 5670 6152 32750 482 chain 259339 chr14 107043718 + 86471747 86475284 L1PA3long 6157 + 2634 6155 7991 428 18 0 114 0 1 2201 0 1 776 chain 10865 chr14 107043718 + 86535230 86535350 L1PA4 6152 + 6022 6142 68752 120 chain 4288 chr14 107043718 + 86536527 86536713 MLT1F 544 + 105 282 89579 50 120 111 16 chain 58227 chr14 107043718 + 86582604 86583238 L1PA2 6032 + 5397 6031 26891 634 chain 393297 chr14 107043718 + 86591242 86595722 L1PA4 6152 + 1455 5968 5260 53 0 29 392 0 1 1253 1 0 2121 0 4 289 6 0 9 0 6 356 chain 2896 chr14 107043718 + 86604735 86604783 ERV3-16A3_LTR 481 + 162 209 100871 14 5 4 29 chain 15647 chr14 107043718 + 86681065 86681360 THE1B 368 + 0 309 61473 39 36 44 86 1 0 19 18 26 21 6 5 69 chain 19646 chr14 107043718 + 86694515 86694735 L1PA4 6152 + 4124 4344 56862 220 chain 28390 chr14 107043718 + 86705611 86706018 MER4A1 472 + 51 458 44284 174 2 23 20 28 7 83 0 2 6 2 0 92 chain 30074 chr14 107043718 + 86731585 86731996 LTR7 482 + 0 482 41984 69 9 46 109 0 1 8 0 31 155 12 14 49 chain 277850 chr14 107043718 + 86731998 86735527 HERVH-int 3825 + 0 3782 7494 265 1 0 68 1 0 62 26 25 24 8 0 15 54 292 12 0 2 15 0 3 648 9 0 24 0 2 13 1 0 106 5 0 472 0 2 36 10 15 248 4 8 29 20 32 24 0 1 103 7 15 282 0 1 623 0 1 314 chain 4969 chr14 107043718 + 86738323 86738407 MER92B 628 + 77 173 85811 37 1 2 20 6 17 20 chain 32212 chr14 107043718 + 86769521 86769909 L1PA7 6471 + 6079 6464 40174 134 0 1 95 1 0 150 3 0 5 chain 25590 chr14 107043718 + 86774163 86774478 THE1B 368 + 53 368 48337 315 chain 19673 chr14 107043718 + 86841537 86841759 L1PA5 6144 + 5920 6142 56818 222 chain 6254 chr14 107043718 + 86863303 86863380 MADE1 96 + 0 92 80161 45 0 15 32 chain 17877 chr14 107043718 + 86952231 86952456 L1PA7 6471 + 6240 6465 58793 72 1 2 137 0 1 7 2 0 6 chain 79007 chr14 107043718 + 86965759 86966898 MER11A 1151 + 0 1151 21869 79 0 8 47 89 0 94 1 0 66 0 11 21 0 2 204 0 13 137 6 9 13 8 10 29 0 4 68 1 2 17 1 59 101 0 1 90 1 0 66 chain 6610 chr14 107043718 + 86966898 86966980 THE1B-int 1605 + 1520 1603 78952 12 0 1 70 chain 30912 chr14 107043718 + 86969856 86970209 L1PA5 6144 + 5760 6120 41208 229 1 8 123 chain 310692 chr14 107043718 + 86974861 86979432 L1PA11 4918 + 60 4505 6596 11 7 8 34 1 0 17 3 1 26 7 1 7 0 6 7 1 0 35 2 0 5 2 1 277 1 3 120 1 0 125 1 0 144 21 22 109 0 1 269 11 7 59 1 0 248 6 10 56 126 1 33 0 1 109 0 1 388 18 18 13 7 1 25 5 9 43 0 3 133 0 3 90 2 0 26 0 1 145 1 0 4 2 4 45 0 3 652 7 9 5 2 0 95 7 8 184 39 40 7 2 0 40 34 32 56 1 0 78 11 12 44 0 1 172 0 1 72 26 25 27 4 0 67 9 12 62 2 0 18 5 4 14 chain 33601 chr14 107043718 + 86993603 86994282 L1PA14 3548 + 2845 3485 38996 32 0 2 41 7 7 11 3 1 10 1 0 4 2 0 48 7 4 70 45 41 15 2 0 6 1 0 14 0 1 56 0 1 12 1 0 110 17 12 25 13 11 14 7 5 17 1 0 12 21 10 18 6 0 10 1 0 15 0 1 4 chain 65524 chr14 107043718 + 87020141 87020969 LTR5_Hs 974 + 0 846 25069 17 0 4 438 0 4 35 1 10 148 0 1 119 7 7 63 chain 5061 chr14 107043718 + 87034238 87034391 Tigger7 736 + 127 346 85347 24 5 4 18 66 133 40 chain 73197 chr14 107043718 + 87038578 87039597 L1PB2 3958 + 2811 3838 23279 47 0 1 62 0 21 34 0 2 110 0 5 214 2 0 56 1 0 11 5 0 65 18 12 94 5 3 69 1 0 56 10 9 72 2 0 21 1 0 63 chain 24563 chr14 107043718 + 87058033 87058376 THE1A 353 + 0 342 49918 84 4 5 21 1 0 29 3 2 61 2 0 7 5 7 126 chain 25038 chr14 107043718 + 87118763 87119057 AluYa5 310 + 10 305 49216 121 0 1 173 chain 26302 chr14 107043718 + 87119844 87120216 MER57B1 401 + 0 369 47267 136 0 1 80 31 27 125 chain 27300 chr14 107043718 + 87177294 87177688 MSTA 426 + 0 414 45824 100 1 14 40 0 6 49 5 0 25 1 7 14 6 9 7 3 0 143 chain 44172 chr14 107043718 + 87189387 87189936 MLT2A2 560 + 0 559 32036 180 1 0 219 5 16 144 chain 7391 chr14 107043718 + 87224494 87224758 L1MC1 2226 + 1946 2183 76414 34 9 6 6 2 0 53 23 17 19 100 84 18 chain 5507 chr14 107043718 + 87258800 87258860 THE1D-int 1627 + 1567 1627 83211 60 chain 18567 chr14 107043718 + 87301485 87301846 L1PB2 3958 + 3484 3838 58030 61 67 66 6 1 0 64 2 1 68 8 6 18 6 5 27 1 0 32 chain 527360 chr14 107043718 + 87423312 87429299 L1PA3long 6157 + 0 6156 1941 153 6 7 547 0 7 62 0 128 244 0 6 57 0 5 89 0 9 533 0 5 310 0 3 711 0 1 364 1 5 594 0 14 306 0 3 828 1 0 192 22 1 817 0 5 150 chain 17816 chr14 107043718 + 87518638 87518997 THE1D 372 + 0 360 58867 40 13 1 13 12 11 68 89 101 19 0 2 105 chain 8843 chr14 107043718 + 87554073 87554207 L1MA4 2864 + 2240 2372 72874 88 22 20 24 chain 26069 chr14 107043718 + 87562418 87562770 THE1A 353 + 0 352 47627 107 4 3 121 10 11 110 chain 123432 chr14 107043718 + 87562772 87564340 THE1A-int 1579 + 1 1571 14953 43 0 2 61 0 3 178 9 7 453 1 0 5 4 5 240 1 0 188 1 0 211 0 1 173 chain 27217 chr14 107043718 + 87564348 87564692 THE1A 353 + 0 343 45944 107 4 3 233 chain 55484 chr14 107043718 + 87581371 87582448 MER4E1 777 + 9 764 27728 14 0 2 146 8 7 66 1 0 4 4 5 210 4 3 50 319 0 12 27 26 46 2 0 164 chain 68516 chr14 107043718 + 87660307 87661624 L1M1 2793 + 553 1786 24332 9 3 0 8 1 0 9 7 5 5 2 0 10 35 19 17 84 26 30 108 120 20 2 0 5 3 0 56 15 12 99 1 0 75 13 14 88 1 0 40 0 1 29 4 0 19 9 1 38 0 1 4 1 0 32 4 5 193 5 8 10 6 9 101 1 0 115 chain 22320 chr14 107043718 + 87762011 87762392 THE1D 372 + 0 357 53381 59 8 0 16 19 0 113 51 51 9 0 3 106 chain 33528 chr14 107043718 + 87804248 87804707 LTR2 463 + 0 463 39061 19 1 2 36 2 1 134 0 11 37 6 0 141 4 5 25 1 0 20 9 8 24 chain 47912 chr14 107043718 + 87814218 87814774 LTR6B 557 + 0 557 30326 38 0 1 11 1 0 309 0 1 197 chain 163330 chr14 107043718 + 87858079 87860160 L1PA7 6471 + 4426 6459 11528 76 72 21 38 17 16 225 5 4 149 1 0 399 1 0 248 8 15 81 0 2 437 1 0 250 1 0 72 chain 5419 chr14 107043718 + 87858158 87858225 L1PA7 6471 - 1101 1168 83605 67 chain 3294 chr14 107043718 + 87923338 87923379 LTR86B2 428 + 365 406 97068 41 chain 266558 chr14 107043718 + 87929105 87932424 L1PA8A 6298 + 2933 6290 7790 33 0 7 168 11 15 6 2 0 157 0 4 43 1 0 81 0 5 40 0 1 204 0 2 122 10 14 24 1 0 12 0 1 213 0 6 171 6 5 947 0 1 91 5 6 93 0 2 5 2 0 50 7 11 15 0 3 51 1 0 26 0 2 638 5 4 78 chain 5809 chr14 107043718 + 87951962 87952049 L1PB1 5432 + 5335 5422 81880 11 1 0 24 1 0 22 0 3 9 1 0 18 chain 20516 chr14 107043718 + 87981036 87981434 L1PB1 5432 + 5047 5411 55768 34 2 0 22 13 11 24 1 0 6 1 0 12 9 5 6 2 0 53 2 1 16 1 0 44 1 0 15 1 0 6 16 6 19 3 0 19 3 1 23 1 0 21 1 0 13 1 0 7 chain 3086 chr14 107043718 + 88016931 88016969 MLT1K 546 + 172 210 98902 38 chain 28976 chr14 107043718 + 88018730 88019072 L1PA7 6471 + 6130 6467 43368 243 0 1 87 6 0 6 chain 58459 chr14 107043718 + 88082279 88082920 L1PA3long 6157 + 5503 6144 26823 641 chain 28840 chr14 107043718 + 88091381 88091735 THE1B 368 + 0 368 43571 40 0 15 117 1 0 196 chain 133416 chr14 107043718 + 88143421 88145931 HUERS-P2-int 2744 + 32 2741 13699 22 1 0 32 2 0 5 1 0 32 0 1 20 7 6 13 3 0 10 28 24 66 87 64 47 16 7 48 9 8 8 2 0 20 2 0 26 1 0 6 9 4 49 6 7 30 5 7 53 0 1 51 1 0 190 24 20 105 1 0 263 8 7 9 1 2 11 0 1 104 363 0 284 0 583 42 0 1 107 19 35 49 2 0 35 4 1 20 0 34 5 0 1 8 2 1 38 3 0 7 1 0 5 1 0 13 32 27 8 2 0 26 chain 11051 chr14 107043718 + 88144861 88144986 HUERS-P2-int 2744 + 1413 1538 68486 125 chain 8026 chr14 107043718 + 88144986 88145083 HUERS-P2-int 2744 + 1180 1277 74621 97 chain 3393 chr14 107043718 + 88145107 88145146 HUERS-P2-int 2744 + 1301 1340 96154 39 chain 4208 chr14 107043718 + 88241300 88241401 MIRb 242 + 76 179 90070 14 5 4 15 0 1 11 26 28 30 chain 28250 chr14 107043718 + 88279737 88280088 THE1A 353 + 0 353 44484 110 1 0 187 1 4 52 chain 518198 chr14 107043718 + 88369552 88376039 L1PA7 6471 + 2 6465 2357 410 23 2 101 7 8 186 23 24 886 0 1 102 0 1 27 8 3 394 0 7 107 1 0 4 0 1 54 0 1 206 12 11 101 0 2 105 6 4 638 0 3 106 1 0 32 1 0 307 1 0 173 2 0 133 4 5 427 1 0 4 0 1 4 0 1 882 0 6 149 0 3 47 0 3 59 0 2 137 16 23 330 29 1 233 2 0 6 chain 41236 chr14 107043718 + 88398175 88398634 L1PA3long 6157 + 5693 6152 33822 459 chain 7677 chr14 107043718 + 88401410 88401543 L1MA9 1812 + 84 216 75688 20 29 28 84 chain 2971 chr14 107043718 + 88519349 88519385 MER3 215 - 5 41 100181 36 chain 18842 chr14 107043718 + 88528516 88528843 THE1B 368 + 0 368 57725 44 0 15 5 0 2 52 0 11 43 2 1 25 42 52 49 0 2 27 9 11 29 chain 163520 chr14 107043718 + 88529433 88532307 L1PBa 3878 + 994 3225 11510 265 316 0 106 1 2 247 5 0 9 5 4 72 1 0 241 3 0 5 7 10 345 11 10 113 28 31 47 0 1 11 314 0 25 29 6 43 1 3 117 1 0 5 3 17 71 8 13 227 8 1 184 chain 22532 chr14 107043718 + 88559401 88559682 AluSc 308 + 9 298 53066 11 1 9 269 chain 4139 chr14 107043718 + 88561916 88562043 MLT1E1A 663 + 432 551 90520 12 1 0 19 64 57 31 chain 22866 chr14 107043718 + 88571679 88571967 AluSc5 308 + 0 284 52552 92 4 0 192 chain 38036 chr14 107043718 + 88655069 88655558 L1PA7 6471 + 4897 5391 36048 50 1 6 21 6 5 226 1 2 184 chain 92184 chr14 107043718 + 88655558 88656625 L1PA7 6471 + 5392 6468 19313 225 1 4 19 0 4 54 0 2 768 chain 277987 chr14 107043718 + 88670363 88676711 L1PA10 4194 + 376 4161 7491 17 0 3 88 4 0 278 15 16 82 7 8 20 5 0 81 21 35 152 1 0 30 1 2 99 0 5 228 6 9 89 1 0 24 0 1 117 2 0 5 0 2 192 3 0 53 0 4 92 1 2 6 1 0 110 0 4 399 1 0 48 0 4 12 0 8 216 0 1 211 1 0 96 0 2 219 0 10 183 10 9 144 7 8 100 1 4 47 5 7 36 0 1 16 2614 4 67 1 0 34 3 0 22 3 0 5 0 3 4 1 0 11 chain 13821 chr14 107043718 + 88711204 88711373 THE1D 372 + 0 170 63843 160 0 1 9 chain 2086 chr14 107043718 + 88719799 88719827 L1PA10 4194 + 2595 2623 105838 28 chain 33674 chr14 107043718 + 88719827 88720240 L1PA10 4194 + 2624 3037 38953 413 chain 7181 chr14 107043718 + 88720246 88720332 L1PA10 4194 + 3045 3131 77003 86 chain 14542 chr14 107043718 + 88720332 88720509 L1PA10 4194 + 3137 3314 62852 177 chain 9862 chr14 107043718 + 88720509 88720639 L1PA10 4194 + 3317 3447 70699 130 chain 9893 chr14 107043718 + 88720642 88720761 L1PA10 4194 + 3452 3570 70632 92 1 0 26 chain 41644 chr14 107043718 + 88720761 88721332 L1PA10 4194 + 3571 4149 33597 275 0 5 79 10 14 7 0 2 129 13 12 22 3 0 33 chain 9068 chr14 107043718 + 88725072 88725266 L1MB3 1562 + 1366 1523 72401 25 8 0 11 2 0 19 44 17 85 chain 12510 chr14 107043718 + 88728097 88728302 MER2 342 + 6 213 65971 45 30 30 35 2 1 85 0 3 8 chain 5633 chr14 107043718 + 88743141 88743218 L1MA5A 2387 + 2230 2306 82649 66 1 0 10 chain 103503 chr14 107043718 + 88762156 88763764 L1P3 4156 + 2759 4063 17879 52 320 6 69 0 4 269 5 4 72 1 5 239 2 5 7 1 0 19 0 1 23 0 1 298 1 0 230 chain 88889 chr14 107043718 + 88765868 88766924 MER11B 1079 + 0 1079 19873 316 1 18 378 0 5 53 2 4 301 1 0 4 chain 53687 chr14 107043718 + 88776930 88777684 L1M1 2793 + 1291 2054 28328 107 10 6 160 0 4 126 17 18 29 0 4 18 0 3 84 12 3 108 0 3 10 0 1 56 0 6 17 chain 10694 chr14 107043718 + 88783117 88783289 THE1C-int 1605 + 915 1063 69054 107 31 7 34 chain 116751 chr14 107043718 + 88783312 88785056 L1MA2 4263 + 431 4114 16096 10 0 1 41 1 0 5 50 28 116 0 1 4 1 0 7 30 39 127 0 3 304 0 12 105 0 2 166 1 0 4 1 10 29 8 7 4 1 0 38 3 1 33 25 30 224 0 1907 93 0 27 149 1 0 6 2 1 93 7 0 17 0 2 28 1 0 9 chain 7107 chr14 107043718 + 88840176 88840261 HY3 101 + 15 100 77237 85 chain 36059 chr14 107043718 + 88883563 88884019 LTR3B_ 500 + 27 483 37380 124 0 1 4 2 1 4 0 1 139 2 1 181 chain 22463 chr14 107043718 + 88942494 88942737 AluYg6 310 + 0 241 53172 123 2 0 118 chain 62481 chr14 107043718 + 88972727 88973431 L1PA5 6144 + 5435 6139 25757 704 chain 6912 chr14 107043718 + 88979097 88979170 tRNA-Ala-GCY 73 + 0 73 77912 73 chain 37418 chr14 107043718 + 89038287 89038737 L1PA5 6144 + 5687 6144 36468 125 0 6 173 6 0 8 6 13 132 chain 14324 chr14 107043718 + 89074201 89074498 L1PA11 4918 + 4302 4578 63161 29 6 7 55 2 1 13 3 1 66 2 0 14 1 0 20 4 0 9 47 37 13 2 0 11 chain 118940 chr14 107043718 + 89111464 89112844 LTR12C 1709 + 0 1709 15715 650 0 278 143 0 47 106 0 4 481 chain 4004 chr14 107043718 + 89133137 89133182 MLT1A0 366 + 321 366 91424 45 chain 4049 chr14 107043718 + 89147878 89147926 MADE1 96 + 46 95 91087 4 0 1 44 chain 3675 chr14 107043718 + 89199983 89200041 MER2B 336 + 278 336 93780 10 3 4 32 1 0 12 chain 11826 chr14 107043718 + 89205948 89206175 MLT1A0 366 + 121 350 67158 43 20 21 18 40 41 106 chain 23544 chr14 107043718 + 89250678 89251009 THE1B 368 + 1 342 51515 33 0 5 130 1 0 31 1 0 14 1 5 11 1 0 10 1 0 66 1 6 30 chain 42366 chr14 107043718 + 89294445 89294994 MER41A 554 + 0 554 33152 180 7 10 9 1 2 54 0 1 298 chain 30248 chr14 107043718 + 89437472 89437860 MER41A 554 + 0 526 41808 100 1 139 287 chain 42630 chr14 107043718 + 89439223 89440073 MER41A 554 + 2 553 32984 422 308 9 120 chain 37293 chr14 107043718 + 89440362 89440789 LTR7 482 + 0 470 36551 211 0 10 9 0 31 125 0 2 82 chain 16058 chr14 107043718 + 89464996 89465210 THE1C 375 + 117 336 60949 8 3 0 56 8 16 139 chain 153871 chr14 107043718 + 89505247 89507141 SVA_D 2077 + 6 2077 12118 31 15 8 8 0 8 481 0 40 105 0 40 34 0 40 106 0 136 148 127 0 149 1 0 17 1 50 663 1 0 7 chain 2971 chr14 107043718 + 89506250 89506302 SVA_D 2077 + 1010 1064 39677 26 0 2 26 chain 18163 chr14 107043718 + 89524826 89525062 MER41-int 2638 + 2394 2633 58498 51 8 9 33 0 2 144 chain 22971 chr14 107043718 + 89536502 89536794 AluSg 306 + 3 297 52400 102 1 0 29 7 7 6 0 3 147 chain 43602 chr14 107043718 + 89541212 89541765 MER41A 554 + 0 554 32381 71 1 0 448 5 7 28 chain 3833 chr14 107043718 + 89564693 89564809 MLT1C 463 + 57 168 92615 22 1 0 5 21 23 17 10 4 10 1 0 13 2 3 14 chain 28330 chr14 107043718 + 89587963 89588379 MSTA 426 + 0 426 44371 25 3 4 111 42 46 181 0 1 24 0 4 30 chain 9108 chr14 107043718 + 89638282 89638425 L1MC1 2226 + 1888 2025 72328 29 2 1 61 4 1 15 2 0 30 chain 10463 chr14 107043718 + 89650031 89650195 MLT2D 439 + 0 246 69488 89 3 0 5 9 8 24 0 86 34 chain 6412 chr14 107043718 + 89650908 89650986 ERVL-int 1947 + 369 447 79632 78 chain 27595 chr14 107043718 + 89665670 89666035 THE1B 368 + 0 368 45460 15 2 0 25 4 9 29 7 8 86 3 2 194 chain 24220 chr14 107043718 + 89670587 89670870 AluSp 311 + 10 301 50458 63 0 8 220 chain 9699 chr14 107043718 + 89684032 89684153 MER41A 554 + 433 554 71051 121 chain 91200 chr14 107043718 + 89684240 89685503 MER41-int 2638 + 1366 2636 19468 56 7 10 48 0 1 34 1 2 151 1 0 70 11 18 101 2 0 143 1 0 32 0 1 11 5 7 41 1 0 83 0 1 4 5 4 12 10 3 19 0 1 235 0 1 71 0 1 30 0 1 78 chain 17621 chr14 107043718 + 89685513 89685733 MER41A 554 + 1 226 59101 19 0 1 46 0 1 51 0 3 104 chain 24366 chr14 107043718 + 89697621 89697964 THE1B 368 + 0 356 50223 54 16 29 89 1 0 26 1 0 104 0 1 24 1 2 27 chain 22172 chr14 107043718 + 89712510 89712750 7SK 245 + 0 240 53604 240 chain 13728 chr14 107043718 + 89716442 89716656 MLT2D 439 + 112 327 63978 87 2 0 40 2 0 20 5 11 14 8 7 36 chain 47116 chr14 107043718 + 89756728 89757417 L1PA16 3655 + 2915 3592 30603 73 1 2 214 1 0 31 4 0 56 2 0 49 0 1 41 2 0 33 0 1 57 12 13 56 21 17 18 3 0 15 chain 38055 chr14 107043718 + 89779333 89779741 L1PA5 6144 + 5724 6132 36028 408 chain 41533 chr14 107043718 + 89786920 89787459 MLT2A2 560 + 0 560 33659 137 3 4 84 2 1 40 4 0 30 3 28 236 chain 3347 chr14 107043718 + 89808117 89808152 MLT1J2 417 + 52 87 96629 35 chain 8063 chr14 107043718 + 89884840 89885066 MLT1A 405 + 137 381 74713 25 60 78 41 41 42 11 1 0 47 chain 16697 chr14 107043718 + 89941877 89942239 THE1D 372 + 0 372 60154 22 5 0 32 105 129 9 0 2 89 16 0 28 0 5 56 chain 28523 chr14 107043718 + 89948192 89948691 L1MA2 4263 + 3617 4103 44080 37 2 0 7 2 1 12 0 3 13 1 2 14 1 3 82 24 20 121 9 11 11 18 11 91 18 11 36 chain 52089 chr14 107043718 + 90012608 90013270 THE1B-int 1605 + 945 1605 28849 224 1 0 39 22 21 376 chain 118115 chr14 107043718 + 90089054 90090624 THE1B-int 1605 + 0 1599 15869 276 1 2 121 8 5 27 0 25 19 5 6 193 0 2 237 1 2 34 1 0 48 0 5 38 25 12 86 0 6 9 0 1 225 1 5 215 chain 59674 chr14 107043718 + 90118774 90119527 L1PREC2 3366 + 1204 1958 26467 35 7 6 65 1 0 288 1 0 262 0 1 72 0 3 22 chain 10456 chr14 107043718 + 90151035 90151218 MSTA 426 + 235 426 69505 20 8 12 45 6 9 13 14 15 77 chain 6533 chr14 107043718 + 90152558 90152635 THE1B 368 + 230 306 79222 12 1 0 64 chain 8431 chr14 107043718 + 90177221 90177328 HY1 111 + 0 111 73840 45 0 4 62 chain 2525 chr14 107043718 + 90178589 90178634 L1MA3 4352 + 4268 4311 103524 14 2 1 5 1 0 23 chain 7805 chr14 107043718 + 90195742 90195962 MER2B 336 + 85 314 75367 18 26 29 78 75 81 23 chain 9726 chr14 107043718 + 90199222 90199337 MER50 708 + 570 685 70989 115 chain 18463 chr14 107043718 + 90201706 90202396 MER83B 357 + 0 350 58144 14 3 0 47 1 2 32 3 2 12 57 67 62 359 12 100 chain 418713 chr14 107043718 + 90227624 90233487 HERVL-int 5654 + 435 5654 4898 25 0 1 6 0 4 264 0 4 64 8 3 69 4 0 146 0 1 96 3 0 463 0 8 207 1 0 186 0 1 257 323 19 17 54 2 221 0 1 41 1 2 177 7 4 575 0 1 188 10 4 246 5 0 43 0 1 154 0 1 82 0 39 315 11 1 92 0 1 614 0 1 143 23 7 188 307 7 227 chain 59950 chr14 107043718 + 90238595 90239342 MER4E 760 + 0 753 26385 185 1 0 54 1 0 21 1 2 127 0 2 11 0 4 16 0 1 330 chain 63764 chr14 107043718 + 90261560 90262299 L1PA5 6144 + 5399 6135 25459 61 8 1 283 0 3 254 0 1 133 chain 3433 chr14 107043718 + 90293549 90293594 MER3 215 + 125 191 95796 22 0 21 23 chain 4138 chr14 107043718 + 90447877 90447938 MLT1H-int 1039 + 890 950 90523 43 2 1 16 chain 178631 chr14 107043718 + 90474211 90476726 MER41-int 2638 + 118 2636 10654 52 28 14 22 0 2 5 4 1 14 3 1 19 1 0 5 7 4 34 4 0 15 1 3 48 0 1 49 0 1 51 1 0 181 0 1 7 1 0 30 1 0 57 1 2 40 13 14 18 2 16 204 2 1 65 0 3 34 1 0 96 4 6 36 0 1 56 1 0 34 0 2 305 1 0 187 9 0 21 2 0 46 0 3 108 6 5 23 0 3 28 5 3 79 0 1 51 0 2 194 0 3 16 5 13 182 chain 28551 chr14 107043718 + 90526546 90526919 THE1C 375 + 0 374 44032 135 0 4 36 1 2 9 4 1 163 1 0 24 chain 5759 chr14 107043718 + 90530849 90530956 L1PB1 5432 + 5325 5430 82089 7 1 0 14 2 0 24 1 0 21 1 0 11 3 8 10 2 0 10 chain 46786 chr14 107043718 + 90708170 90708812 Tigger1 2417 + 871 1558 30735 165 0 3 51 5 6 180 20 23 149 8 45 51 0 1 13 chain 81231 chr14 107043718 + 90708812 90709691 L1PA4 6152 + 5267 6146 21383 879 chain 7724 chr14 107043718 + 90767235 90767345 L1M4c 1769 + 499 617 75550 14 1 0 63 0 10 22 1 0 9 chain 18540 chr14 107043718 + 90792933 90793241 THE1D 372 + 0 314 58059 97 6 8 18 10 14 31 18 24 10 7 1 111 chain 88845 chr14 107043718 + 90823109 90824217 MER11A 1151 + 0 1151 19882 79 0 8 143 1 0 64 9 20 338 5 0 97 1 0 110 12 44 182 1 0 66 chain 24728 chr14 107043718 + 90859815 90860121 L1PA7 6471 + 6164 6470 49682 192 4 5 91 1 0 18 chain 51551 chr14 107043718 + 90875492 90876049 L1PA4 6152 + 5581 6138 29022 557 chain 33392 chr14 107043718 + 90951501 90952024 HERVK11-int 2540 + 1818 2303 39186 17 1 0 83 1 3 103 1 0 80 1 6 124 90 47 22 chain 87254 chr14 107043718 + 90953100 90954214 MER11A 1151 + 0 1148 20183 108 0 2 72 12 0 39 7 12 61 5 1 31 0 2 345 6 9 137 6 40 107 0 4 178 chain 33030 chr14 107043718 + 91034372 91034824 LTR12 884 + 0 861 39492 25 1 0 13 0 18 152 1 134 26 0 22 191 5 242 38 chain 49614 chr14 107043718 + 91087330 91087908 LTR10C 591 + 0 580 29719 325 0 1 4 1 0 180 0 2 68 chain 36532 chr14 107043718 + 91119632 91120159 MLT2A2 560 + 0 560 37058 8 1 0 50 0 10 19 1 0 82 12 11 115 0 1 40 1 0 4 0 1 58 5 16 86 8 23 13 1 0 23 chain 50046 chr14 107043718 + 91124711 91125302 LTR10C 591 + 1 591 29546 154 1 0 302 6 8 5 2 0 121 chain 23774 chr14 107043718 + 91136691 91136981 AluSp 311 + 5 294 51156 112 1 0 177 chain 26124 chr14 107043718 + 91148971 91149276 AluSp 311 + 6 311 47527 305 chain 5462 chr14 107043718 + 91155391 91155470 MER21B 843 + 0 80 83394 31 5 6 43 chain 3703 chr14 107043718 + 91230552 91230626 MLT1J2 417 + 62 135 93597 32 19 18 23 chain 29814 chr14 107043718 + 91425984 91426467 THE1B-int 1605 + 0 429 42221 12 19 20 80 54 0 157 4 6 7 2 0 78 2 1 68 chain 206086 chr14 107043718 + 91443747 91446878 L1MA2 4263 + 1044 3872 9502 22 0 3 45 6 8 208 0 6 151 1 0 19 0 4 44 0 4 183 3 0 27 6 8 71 0 3 12 0 2 94 59 14 58 18 20 216 27 28 262 0 4 84 6 4 233 0 3 51 0 1 98 0 1 136 0 2 141 0 3 6 3 0 12 4 6 32 0 5 77 0 4 108 2 0 17 5 1 77 295 0 32 1 2 113 3 0 63 chain 300272 chr14 107043718 + 91555331 91561593 L1PA10 4194 + 175 4150 6819 12 11 0 11 3 0 18 11 7 10 2 0 8 1 0 9 1 0 21 2 0 15 1 0 8 49 23 18 2 0 21 1 0 7 1 0 32 10 0 8 1 0 80 3 1 396 4 2 232 0 1 42 0 23 103 1947 0 171 3 2 695 1 0 459 0 1 4 1 0 61 3 7 100 17 9 232 0 4 100 2 1 229 0 1 100 0 1 201 2 10 32 306 0 8 0 8 397 3 0 34 chain 16670 chr14 107043718 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1 112 chain 22942 chr14 107043718 + 91749107 91749385 L1PA10 4194 + 2550 2829 52458 73 0 1 205 chain 25667 chr14 107043718 + 91759686 91760097 MSTA 426 + 0 426 48216 102 0 2 104 3 1 13 67 81 76 1 2 45 chain 22270 chr14 107043718 + 91765124 91765490 L1PB4 2604 + 1633 1988 53450 13 3 0 58 19 11 7 5 0 70 18 23 173 chain 33619 chr14 107043718 + 91771263 91771794 L1PA15 4387 + 3847 4356 38987 44 3 1 41 1 0 171 2 1 25 1 0 54 2 1 22 6 1 8 2 1 39 17 14 42 2 0 10 12 7 27 chain 122367 chr14 107043718 + 91806280 91807824 THE1B-int 1605 + 17 1600 15132 415 2 33 15 0 1 5 1 0 118 0 1 25 6 9 5 3 0 125 0 1 68 4 6 25 2 0 154 0 2 401 0 4 170 chain 30602 chr14 107043718 + 91850470 91851221 MER1A 529 + 85 529 41465 169 310 0 30 0 3 5 9 6 158 9 10 29 11 13 21 chain 9882 chr14 107043718 + 91924066 91924191 MER85 139 + 4 139 70657 86 0 10 39 chain 13254 chr14 107043718 + 91960184 91960363 MER30 238 + 38 238 64701 59 0 3 8 4 16 37 0 6 71 chain 8265 chr14 107043718 + 91968669 91968794 L1MD2 1676 + 1346 1474 74251 92 7 11 4 1 0 21 chain 5195 chr14 107043718 + 91991353 91991420 MSTD 398 + 331 398 84700 67 chain 23992 chr14 107043718 + 92052213 92052506 AluSp 311 + 1 299 50803 147 0 6 75 8 7 63 chain 43156 chr14 107043718 + 92054233 92054748 MER41A 554 + 22 554 32682 468 0 17 47 chain 11128 chr14 107043718 + 92056621 92056771 MER41-int 2638 + 2473 2636 68363 9 0 6 23 0 1 12 5 9 38 0 2 63 chain 27904 chr14 107043718 + 92056780 92057145 MER41A 554 + 0 372 45032 189 1 0 4 18 26 153 chain 38853 chr14 107043718 + 92083700 92084237 MLT2A2 560 + 0 560 35464 16 1 5 172 19 15 11 0 8 172 3 14 137 0 4 6 chain 31307 chr14 107043718 + 92136326 92136764 LTR3B 427 + 0 427 40886 149 14 13 134 14 11 25 11 5 11 1 0 79 chain 8557 chr14 107043718 + 92141230 92141333 MER2 342 + 139 242 73547 103 chain 22679 chr14 107043718 + 92201254 92201617 THE1B 368 + 0 368 52853 113 3 4 52 31 24 7 1 0 10 0 4 10 11 19 63 1 0 4 1 2 56 chain 32944 chr14 107043718 + 92218636 92219341 L1MA2 4263 + 3652 4218 39557 10 1 0 134 13 10 148 2 1 11 2 1 85 11 4 50 1 0 8 194 71 19 4 2 12 chain 12209 chr14 107043718 + 92296313 92296675 MLT1C 463 + 69 430 66461 55 6 0 18 27 32 14 39 38 15 8 36 6 27 0 24 44 44 79 chain 44196 chr14 107043718 + 92381034 92381606 L1PA8 5853 + 5297 5853 32015 267 1 0 44 2 0 65 7 6 61 2 1 19 1 0 68 10 0 25 chain 23083 chr14 107043718 + 92385224 92385510 AluSc5 308 + 0 293 52232 144 0 8 126 2 1 14 chain 37758 chr14 107043718 + 92533273 92533857 L1PB1 5432 + 4877 5422 36238 226 7 0 11 1 0 24 1 0 8 1 0 11 6 2 9 2 0 52 2 1 15 1 0 45 1 0 15 2 0 6 1 0 11 9 0 14 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 chain 16748 chr14 107043718 + 92593499 92593692 L1PA5 6144 + 5942 6135 60095 193 chain 3822 chr14 107043718 + 92610186 92610234 L1MB3 1562 + 1508 1555 92700 15 1 0 32 chain 3286 chr14 107043718 + 92615140 92615181 THE1B 368 + 327 368 97143 41 chain 3497 chr14 107043718 + 92730591 92730637 MER33 330 + 145 193 95266 6 0 2 40 chain 6016 chr14 107043718 + 92750143 92750230 LTR12 884 + 162 365 81015 22 2 27 42 0 91 21 chain 7249 chr14 107043718 + 92774057 92774191 L1MB8 1703 + 1450 1585 76814 63 0 1 7 13 14 24 6 5 21 chain 488799 chr14 107043718 + 92852827 92858343 L1PA4 6152 + 3 5520 3449 96 0 1 838 0 19 279 1 0 236 0 1 56 1 2 162 0 1 1584 23 0 660 0 1 964 0 1 616 chain 5712 chr14 107043718 + 92871236 92871308 L1MB2 1706 + 1620 1692 82283 72 chain 4651 chr14 107043718 + 92965620 92965676 L1MB7 1623 + 0 56 87526 56 chain 24015 chr14 107043718 + 92996295 92996588 L1PA5 6144 + 5846 6144 50772 155 0 1 126 1 5 11 chain 19248 chr14 107043718 + 93118039 93118260 AluSp 311 + 39 260 57294 221 chain 34119 chr14 107043718 + 93165127 93165588 LTR2B 499 + 9 494 38622 5 1 0 10 0 10 40 3 0 27 5 11 16 5 17 163 0 1 8 1 0 177 chain 11937 chr14 107043718 + 93231741 93231959 MER1B 344 + 102 335 66940 19 8 11 5 3 0 18 0 4 64 30 43 10 2 0 59 chain 35526 chr14 107043718 + 93233195 93233610 L1PA7 6471 + 6054 6470 37701 82 0 1 333 chain 3422 chr14 107043718 + 93330604 93330643 MADE1 96 + 57 96 95888 39 chain 11164 chr14 107043718 + 93336820 93336955 MSTB 430 + 0 135 68317 135 chain 24967 chr14 107043718 + 93348921 93349238 LTR12D 1347 + 831 1347 49336 89 0 200 29 4 5 104 2 0 89 chain 11116 chr14 107043718 + 93354305 93354500 Tigger4a 237 + 14 212 68387 46 10 11 51 6 7 34 12 13 36 chain 244674 chr14 107043718 + 93358030 93361341 HERVL-int 5654 + 0 3035 8360 205 0 14 429 2 1 107 3 0 183 0 1 4 1 0 130 13 14 514 6 10 142 0 2 611 0 4 88 0 1 132 0 32 187 0 7 136 337 0 81 chain 10332 chr14 107043718 + 93374847 93375005 MSTC-int 1625 + 1462 1617 69732 64 7 0 18 7 11 62 chain 18443 chr14 107043718 + 93375898 93376157 MSTC 436 + 177 436 58177 4 1 0 54 9 10 132 0 1 32 1 0 26 chain 7703 chr14 107043718 + 93422686 93422778 L1MA3 4352 + 2370 2462 75622 92 chain 5215 chr14 107043718 + 93452713 93452834 MIR 256 + 112 225 84605 22 20 10 32 18 20 29 chain 4999 chr14 107043718 + 93534844 93535046 MER97d 503 + 65 266 85669 22 1 0 26 121 121 32 chain 27964 chr14 107043718 + 93804284 93804582 AluYa5 310 + 0 296 44929 132 2 0 164 chain 27538 chr14 107043718 + 93874181 93874541 THE1B 368 + 0 357 45538 172 2 1 5 0 1 21 2 0 93 1 0 64 chain 44301 chr14 107043718 + 93875761 93876399 MER51A 677 + 0 661 31948 176 17 0 23 10 0 26 13 24 127 0 39 100 20 20 126 chain 7540 chr14 107043718 + 93901400 93901494 MER30 238 + 144 238 76029 94 chain 396852 chr14 107043718 + 94066555 94072550 L1PB1 5432 + 19 5384 5203 27 11 12 193 0 2 153 4 0 116 15 14 54 0 5 230 0 3 521 3 0 16 7 0 10 24 22 13 13 8 111 11 10 262 1 0 4 0 1 206 0 1 482 5 0 242 3 5 100 1 0 49 1 4 326 0 3 196 4 0 62 2 1 118 1 2 108 10 13 158 3 5 31 0 1 452 1 0 257 0 2 75 0 2 98 612 13 37 4 5 177 9 10 5 1 0 51 11 11 24 1 0 6 19 14 11 3 1 50 2 1 60 1 0 6 76 59 24 1 0 14 chain 28878 chr14 107043718 + 94154411 94154786 THE1C 375 + 0 375 43520 185 1 0 98 6 7 85 chain 101092 chr14 107043718 + 94154829 94156313 THE1C-int 1605 + 45 1594 18171 51 1 58 14 3 0 129 0 1 31 0 6 110 5 12 284 16 10 95 9 10 144 16 18 5 2 0 91 2 0 5 0 2 54 5 4 91 73 74 185 0 2 63 chain 14319 chr14 107043718 + 94201792 94202068 L1PB1 5432 + 4967 5220 63169 139 87 64 50 chain 11743 chr14 107043718 + 94202070 94202293 L1PB1 5432 + 5221 5422 67325 16 4 3 41 1 0 14 2 0 7 16 6 18 3 1 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 chain 49847 chr14 107043718 + 94247872 94248565 L1P4 1494 + 99 797 29621 24 1 0 22 10 9 401 9 14 165 3 4 45 1 2 12 chain 118340 chr14 107043718 + 94301189 94302494 L1PA5 6144 + 4831 6144 15827 853 0 1 314 0 7 138 chain 5624 chr14 107043718 + 94358542 94358606 MSTA 426 + 273 337 82690 64 chain 43545 chr14 107043718 + 94414225 94414717 MER9a2 513 + 2 494 32417 492 chain 3031 chr14 107043718 + 94419572 94419606 THE1B-int 1605 - 242 276 99490 34 chain 26516 chr14 107043718 + 94431241 94431636 MSTA 426 + 0 425 46952 99 9 29 26 0 6 10 8 12 38 19 20 4 1 0 181 chain 23885 chr14 107043718 + 94435294 94435651 THE1B 368 + 0 356 50967 44 5 20 39 3 4 62 1 0 23 2 0 87 0 1 26 16 1 49 chain 2495 chr14 107043718 + 94436831 94436931 MER1A 529 - 265 367 103672 16 49 50 7 1 0 16 0 2 11 chain 81052 chr14 107043718 + 94482205 94483203 LTR5B 1012 + 0 1003 21424 137 0 14 361 18 20 16 12 0 111 0 1 343 chain 25626 chr14 107043718 + 94510331 94510730 L1PB2 3958 + 3449 3838 48275 7 9 0 71 0 1 17 15 3 34 0 1 35 1 0 63 2 1 73 10 21 62 chain 177494 chr14 107043718 + 94607398 94609477 L1PA6 6164 + 4072 6154 10703 137 7 10 1935 chain 86120 chr14 107043718 + 94626137 94627143 LTR5A 1029 + 0 1029 20412 11 1 5 134 7 20 699 0 7 86 1 0 67 chain 9580 chr14 107043718 + 94631231 94631376 L1MB5 1630 + 1323 1467 71310 57 0 1 11 1 0 39 4 6 5 2 0 19 1 0 6 chain 28061 chr14 107043718 + 94635886 94636385 L1PB1 5432 + 4944 5423 44774 70 0 2 87 1 2 10 3 0 27 3 2 14 5 10 50 2 1 18 6 5 38 1 0 16 1 0 4 2 0 11 9 0 16 12 9 10 2 0 24 1 0 22 1 0 12 1 0 12 1 0 7 chain 127944 chr14 107043718 + 94657425 94658900 SVA_C 1631 + 0 1631 14284 19 0 35 665 0 40 79 0 88 76 3 0 5 2 1 10 1 0 233 3 1 379 chain 7262 chr14 107043718 + 94825022 94825134 LTR40b 463 + 349 463 76790 51 18 20 43 chain 60255 chr14 107043718 + 94924546 94925206 L1PA3long 6157 + 5496 6156 26306 660 chain 6219 chr14 107043718 + 94960884 94961043 MIR 256 + 57 224 80272 57 0 2 20 68 74 14 chain 19149 chr14 107043718 + 95083185 95083429 AluSc 308 + 13 256 57397 65 6 5 173 chain 26928 chr14 107043718 + 95138694 95138980 L1HS 6032 + 5746 6032 46363 286 chain 5030 chr14 107043718 + 95143297 95143362 MER67C 710 + 1 64 85519 55 2 0 8 chain 15824 chr14 107043718 + 95200983 95201165 L1PA7 6471 + 6282 6466 61252 30 0 2 152 chain 62173 chr14 107043718 + 95279380 95281029 MER41-int 2638 + 184 1173 25825 8 0 1 20 3 1 16 9 7 11 1 0 7 4 0 42 325 5 47 1 0 79 24 18 14 1 0 98 0 2 68 0 1 49 2 0 17 14 15 96 337 17 19 2 0 131 1 0 8 3 0 9 23 23 160 chain 27788 chr14 107043718 + 95283047 95283385 THE1A 353 + 0 341 45197 12 0 4 94 1 0 231 chain 119620 chr14 107043718 + 95283398 95284936 THE1A-int 1579 + 0 1579 15590 107 3 0 6 6 9 80 0 28 123 0 1 529 6 5 335 1 14 10 0 3 26 17 13 33 0 1 55 0 1 181 1 0 19 chain 11101 chr14 107043718 + 95310122 95310274 MSTB 430 + 261 418 68404 46 5 10 101 chain 28052 chr14 107043718 + 95402578 95403117 L1MA5A 2387 + 1884 2375 44784 128 18 21 38 2 1 35 1 0 50 2 0 24 1 0 31 6 5 13 27 0 22 0 1 33 46 31 13 1 0 9 2 1 22 2 0 13 chain 76882 chr14 107043718 + 95426602 95427899 LTR13 1007 + 0 1007 22352 73 290 9 182 0 1 116 16 17 287 34 26 192 1 0 62 16 14 28 chain 41461 chr14 107043718 + 95558018 95558706 L1PA16 3655 + 2979 3619 33699 142 39 16 56 9 8 90 2 0 226 9 13 22 65 44 7 5 0 16 chain 66989 chr14 107043718 + 95590931 95591717 L1PA7 6471 + 5659 6461 24705 38 0 16 145 0 7 189 13 6 401 chain 43980 chr14 107043718 + 95650407 95650888 LTR12C 1709 + 1228 1709 32141 481 chain 13348 chr14 107043718 + 95655132 95655288 THE1D 372 + 210 366 64546 156 chain 3462 chr14 107043718 + 95680803 95680841 MER101 471 + 0 38 95527 38 chain 8801 chr14 107043718 + 95730101 95730227 LTR19A 502 + 375 502 72990 85 6 7 35 chain 23710 chr14 107043718 + 95753347 95753617 L1PA5 6144 + 5852 6126 51262 196 0 4 74 chain 33594 chr14 107043718 + 95957104 95957552 LTR2B 499 + 34 499 39002 31 2 0 46 0 7 7 4 16 167 0 1 8 1 0 182 chain 39978 chr14 107043718 + 95960008 95960461 L1PA7 6471 + 5986 6454 34672 435 0 15 18 chain 308242 chr14 107043718 + 95973432 95977202 HERVH-int 3825 + 0 3825 6654 328 1 149 13 1 2 40 5 0 38 65 0 10 1 0 10 4 0 13 71 1 15 1 0 11 4 42 26 2 1 56 0 1 8 12 15 62 0 1 362 0 9 1841 0 1 380 0 3 10 3 0 377 chain 27698 chr14 107043718 + 95978461 95978860 LTR7 482 + 0 482 45319 69 8 46 109 8 40 43 6 17 95 12 14 49 chain 296843 chr14 107043718 + 96002666 96006668 L1PA10 4194 + 187 4161 6929 13 3 0 7 2 0 9 12 8 8 2 0 8 6 5 5 1 0 21 2 0 16 55 40 8 2 0 21 79 63 63 4 2 40 0 3 470 0 1 158 1 0 54 4 17 31 6 7 568 0 1 172 3 1 32 1 4 30 0 1 543 6 7 55 0 4 854 2 0 10 1 5 554 2 1 9 3 0 34 1 0 11 chain 38146 chr14 107043718 + 96012879 96013350 LTR2B 499 + 9 498 35951 5 1 0 86 5 24 184 0 1 10 1 0 179 chain 5277 chr14 107043718 + 96031097 96031163 L1PA16 3655 + 3515 3586 84298 59 0 5 7 chain 8572 chr14 107043718 + 96092829 96092989 MER20 218 + 46 206 73514 22 38 39 77 1 0 22 chain 4659 chr14 107043718 + 96105041 96105097 MER81 114 + 1 57 87482 56 chain 40588 chr14 107043718 + 96191607 96192089 MER4E1 777 + 0 483 34234 22 2 3 458 chain 3567 chr14 107043718 + 96304181 96304247 MER5A 189 + 95 162 94675 20 14 15 32 chain 6876 chr14 107043718 + 96368594 96370835 MSTB1 431 + 34 394 78050 21 21 23 41 1926 58 22 150 135 60 chain 10001 chr14 107043718 + 96384634 96384800 U2 167 + 7 166 70418 123 11 7 5 2 0 13 2 1 10 chain 8912 chr14 107043718 + 96680172 96680316 MLT1A0 366 + 0 160 72758 13 0 1 7 31 46 93 chain 23573 chr14 107043718 + 96703270 96703641 THE1B 368 + 0 368 51471 15 2 0 32 0 1 63 0 3 5 14 21 27 37 28 96 3 0 77 chain 47588 chr14 107043718 + 96883963 96884498 L1PA2 6032 + 5500 6032 30446 195 0 1 63 2 0 260 2 0 13 chain 23518 chr14 107043718 + 96915499 96915878 THE1D 372 + 0 372 51558 62 0 1 4 1 0 95 0 1 17 39 44 13 13 1 101 2 1 32 chain 4712 chr14 107043718 + 96961827 96961892 L1MB3 1562 + 1489 1553 87186 35 1 0 29 chain 22908 chr14 107043718 + 97003371 97003725 THE1B 368 + 0 366 52503 127 6 7 38 2 3 23 35 45 123 chain 23925 chr14 107043718 + 97007069 97007400 THE1A 353 + 20 353 50904 27 0 1 46 1 0 13 23 24 175 0 1 46 chain 59362 chr14 107043718 + 97161047 97161723 L1PA5 6144 + 5447 6124 26548 457 0 1 219 chain 72356 chr14 107043718 + 97166778 97167575 L1PA3long 6157 + 5359 6156 23458 797 chain 41783 chr14 107043718 + 97226449 97226987 MLT2A2 560 + 0 560 33500 193 9 18 189 2 13 63 0 2 82 chain 35455 chr14 107043718 + 97259925 97260327 L1PA5 6144 + 5734 6137 37749 255 0 1 147 chain 14057 chr14 107043718 + 97264646 97264821 Tigger3b 1229 + 1016 1191 63508 175 chain 4182 chr14 107043718 + 97278741 97278789 MER103C 291 + 121 169 90253 48 chain 13041 chr14 107043718 + 97320625 97320803 MLT2A2 560 + 0 196 65043 33 8 26 67 0 1 56 1 0 13 chain 22294 chr14 107043718 + 97340055 97340383 THE1B 368 + 18 368 53417 26 9 24 106 4 3 122 12 20 49 chain 7302 chr14 107043718 + 97350575 97350731 MER58A 224 + 29 185 76659 85 48 49 5 1 0 17 chain 21766 chr14 107043718 + 97364062 97364416 MER83B 357 + 0 335 54145 10 6 1 49 1 0 8 16 0 17 0 3 24 10 1 19 11 20 183 chain 124104 chr14 107043718 + 97507366 97508924 THE1A-int 1579 + 0 1579 14826 317 0 10 393 17 19 505 0 1 234 0 8 92 chain 25023 chr14 107043718 + 97539125 97539489 THE1C 375 + 0 375 49240 107 1 2 16 3 0 57 12 13 16 7 21 118 2 0 25 chain 23663 chr14 107043718 + 97651349 97651717 THE1D 372 + 0 372 51333 102 1 0 57 60 65 148 chain 40017 chr14 107043718 + 97665838 97666392 MLT2A2 560 + 0 560 34647 395 8 19 99 25 20 27 chain 517314 chr14 107043718 + 97674371 97680845 L1PA7 6471 + 44 6457 2408 51 5 10 236 0 1 64 1 0 77 1 0 4 0 1 125 9 0 37 0 1 510 5 17 100 26 79 244 0 3 292 0 3 349 1 0 42 0 2 349 25 1 842 0 2 11 1 0 489 2 0 4 132 0 382 1 0 70 0 9 156 0 2 60 0 8 120 0 5 147 1 0 665 0 2 224 5 7 289 0 1 320 chain 34203 chr14 107043718 + 97744820 97745255 L1PA7 6471 + 5179 5614 38559 81 6 6 348 chain 6633 chr14 107043718 + 97745255 97745336 L1PA7 6471 + 5617 5698 78864 81 chain 35951 chr14 107043718 + 97745336 97745785 L1PA7 6471 + 5700 6136 37438 286 13 0 150 chain 3429 chr14 107043718 + 97780996 97781037 MER58A 224 + 42 83 95834 41 chain 5835 chr14 107043718 + 97787666 97787730 L1PA5 6144 + 6064 6128 81759 64 chain 61273 chr14 107043718 + 97817287 97817983 L1PA5 6144 + 4620 5322 26043 452 0 6 244 chain 3307 chr14 107043718 + 97875712 97875753 MADE1 96 + 55 96 96946 41 chain 53139 chr14 107043718 + 97876002 97876652 L1PA7 6471 + 5818 6467 28519 495 8 9 137 2 0 8 chain 14858 chr14 107043718 + 97880624 97880892 L1MA6 2487 + 1928 2192 62450 67 53 52 8 0 1 4 1 0 7 3 0 125 chain 8578 chr14 107043718 + 97892317 97892417 MER30 238 + 138 238 73500 100 chain 181704 chr14 107043718 + 98003169 98005236 L1PA5 6144 + 4071 6137 10514 171 0 1 101 0 4 426 2 4 243 9 1 400 0 1 385 1 0 83 1 0 110 0 1 135 chain 20748 chr14 107043718 + 98058652 98058999 MLT2A1 477 + 0 385 55437 60 34 41 41 0 1 25 1 5 115 22 48 49 chain 2337 chr14 107043718 + 98079387 98079431 MADE1 96 + 51 96 104514 18 6 7 20 chain 79719 chr14 107043718 + 98089744 98090703 L1PA7 6471 + 4704 5664 21691 245 6 0 34 0 2 542 0 2 85 0 3 47 chain 26853 chr14 107043718 + 98100795 98101213 L1MA2 4263 + 2114 2539 46466 36 65 69 238 0 1 5 0 2 74 chain 4537 chr14 107043718 + 98132461 98132626 MLT2B4 540 + 156 335 88129 51 98 112 16 chain 18472 chr14 107043718 + 98240968 98241289 Tigger4b 360 + 6 353 58129 56 8 9 30 15 38 18 1 2 24 1 0 25 1 3 11 11 12 63 1 0 56 chain 11260 chr14 107043718 + 98252428 98252567 L1PA8 5853 + 5716 5853 68151 27 1 0 17 1 0 93 chain 3035 chr14 107043718 + 98649114 98649151 MER57A1 433 + 0 37 99462 37 chain 64840 chr14 107043718 + 98653135 98653908 LTR17 781 + 0 774 25229 326 0 1 447 chain 25551 chr14 107043718 + 98764871 98765146 AluYb8 318 + 35 310 48401 275 chain 21755 chr14 107043718 + 98777283 98778023 L1PB1 5432 + 5016 5408 54165 83 10 11 8 3 0 20 1 0 9 1 0 10 332 15 47 1 0 18 1 0 44 1 0 14 3 0 7 18 9 16 28 19 24 1 0 21 1 0 13 1 0 4 chain 6374 chr14 107043718 + 98820535 98820666 MLT1D 503 + 413 496 79763 10 48 0 73 chain 18911 chr14 107043718 + 98869671 98870027 L1PB1 5432 + 5109 5430 57628 5 1 0 24 1 0 6 1 0 14 4 0 9 2 0 53 2 1 16 1 0 43 1 0 16 3 0 6 16 6 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 2 0 10 chain 13205 chr14 107043718 + 98882401 98882609 L1MB3 1562 + 1138 1353 64766 27 10 11 25 1 0 104 9 16 32 chain 4650 chr14 107043718 + 98923903 98923974 MADE1 96 + 0 96 87529 20 1 26 50 chain 9185 chr14 107043718 + 98979932 98980057 MSTA 426 + 257 401 72155 16 1 0 23 4 24 81 chain 42476 chr14 107043718 + 98985204 98985684 LTR7 482 + 0 482 33076 419 12 14 49 chain 297526 chr14 107043718 + 98985686 98989235 HERVH-int 3825 + 0 3825 6900 476 0 56 38 1 0 10 1 0 24 29 0 15 1 0 12 12 9 58 0 20 11 2 1 49 1 0 36 0 1 134 0 1 73 1 4 195 15 0 218 0 1 243 4 31 284 0 4 1082 0 3 31 8 218 135 1 0 238 0 3 111 chain 41633 chr14 107043718 + 98992459 98992939 LTR7 482 + 0 482 33605 419 12 14 49 chain 66363 chr14 107043718 + 99044404 99045196 L1PA8A 6298 + 5492 6286 24854 647 0 2 145 chain 79396 chr14 107043718 + 99288000 99288892 L1PA5 6144 + 5239 6135 21765 58 0 4 834 chain 7282 chr14 107043718 + 99310047 99310138 MSTA 426 + 335 426 76724 91 chain 2556 chr14 107043718 + 99362851 99362878 MER20 218 + 50 77 103346 27 chain 22567 chr14 107043718 + 99477480 99477763 AluSp 311 + 8 297 53021 162 5 6 19 0 5 97 chain 4490 chr14 107043718 + 99519779 99519967 L1MB5 1630 + 1358 1540 88389 30 7 6 29 97 93 4 1 0 20 chain 9081 chr14 107043718 + 99583016 99583117 HY3 101 + 0 101 72375 101 chain 7593 chr14 107043718 + 99682453 99682551 MER50 708 + 582 686 75883 27 4 10 67 chain 25023 chr14 107043718 + 99762941 99763270 THE1B 368 + 0 348 49239 44 0 15 48 0 1 23 17 21 23 1 0 173 chain 2973 chr14 107043718 + 99810763 99810812 L1MA7 2200 + 2062 2104 100142 26 7 0 16 chain 7882 chr14 107043718 + 99878076 99878167 MER30 238 + 147 238 75177 91 chain 10042 chr14 107043718 + 99967256 99967439 MER51B 395 + 211 395 70327 25 49 50 109 chain 13462 chr14 107043718 + 100093923 100094113 MER44A 345 + 152 343 64370 127 6 7 57 chain 144285 chr14 107043718 + 100180263 100181944 SVA_D 2077 + 15 2077 12753 17 6 0 523 0 156 93 0 1 71 0 182 9 0 1 115 50 0 156 2 99 639 chain 1861 chr14 107043718 + 100181121 100181147 SVA_D 2077 + 1029 1056 40018 8 0 1 18 chain 21035 chr14 107043718 + 100259266 100259531 AluSc 308 + 28 291 55075 101 2 1 127 2 1 33 chain 3622 chr14 107043718 + 100311157 100311225 MLT1A0 366 + 73 139 94261 7 15 0 31 0 13 15 chain 145495 chr14 107043718 + 100344061 100345663 SVA_D 2077 + 15 2064 12655 6 1 0 6 1 0 780 0 1 95 0 438 388 0 10 325 chain 6446 chr14 107043718 + 100413377 100413763 MADE1 96 + 1 96 79530 38 297 6 51 chain 38604 chr14 107043718 + 100507963 100508439 L1PA16 3655 + 1283 1758 35638 431 1 0 44 chain 11796 chr14 107043718 + 100597238 100597383 LTR44 473 + 326 471 67215 145 chain 75817 chr14 107043718 + 100631733 100632628 L1PA5 6144 + 5252 6144 22632 42 4 0 213 5 4 108 6 7 430 0 1 87 chain 6201 chr14 107043718 + 100662170 100662245 MER33 330 + 163 238 80350 75 chain 3848 chr14 107043718 + 100742156 100742200 MER20 218 + 23 67 92515 44 chain 47837 chr14 107043718 + 101094898 101095443 LTR6B 557 + 0 557 30348 91 0 4 98 1 11 71 2 0 282 chain 126718 chr14 107043718 + 101143774 101145328 L1PA7 6471 + 3612 5179 14446 94 0 1 5 9 4 361 0 1 33 9 0 200 0 3 211 0 4 53 0 3 84 0 8 126 0 2 10 1 5 129 1 0 223 0 2 5 chain 33978 chr14 107043718 + 101160202 101160609 MER48 407 + 0 407 38722 407 chain 5583 chr14 107043718 + 101215052 101215137 MLT1A 405 + 67 162 82885 35 4 14 9 1 0 6 0 1 30 chain 557600 chr14 107043718 + 101266199 101272227 L1PA2 6032 + 2 6031 266 481 1 2 5546 chain 50158 chr14 107043718 + 101299707 101300332 PRIMA4_LTR 623 + 0 614 29505 80 0 1 179 1 3 121 14 0 230 chain 31976 chr14 107043718 + 101323637 101324097 LTR10A 586 + 115 564 40361 25 4 8 118 36 7 25 0 1 24 1 13 181 0 1 46 chain 6517 chr14 107043718 + 101375253 101375335 MER53 195 + 109 190 79282 16 1 0 65 chain 5524 chr14 107043718 + 101569320 101569385 L1MA8 2339 + 1257 1322 83136 65 chain 9377 chr14 107043718 + 101609848 101610032 L1MA8 2339 + 2101 2261 71751 16 18 4 33 9 6 36 6 0 61 1 0 4 chain 13343 chr14 107043718 + 101648037 101648296 L1PB1 5432 + 5167 5404 64560 50 8 7 13 1 0 43 1 0 12 29 17 18 13 10 9 2 0 24 1 0 21 1 0 13 chain 170448 chr14 107043718 + 101674488 101676355 L1PA3long 6157 + 4285 6157 11087 356 1 0 666 1 0 705 0 7 138 chain 14249 chr14 107043718 + 101681932 101682156 LTR8 732 + 19 269 63270 13 0 9 156 31 48 24 chain 5429 chr14 107043718 + 101689643 101689876 LTR12C 1709 + 821 977 83565 16 79 0 46 69 71 23 chain 142350 chr14 107043718 + 101698986 101701588 L1MA3 4352 + 2121 4352 12905 14 3 4 174 1 0 8 13 13 178 5 0 37 7 15 19 1 0 141 0 1 36 37 29 51 8 0 199 15 17 155 1 0 24 17 4 147 2 0 10 6 7 16 0 1 167 9 14 42 362 36 103 1 3 35 5 9 13 5 9 199 0 1 39 50 28 63 6 5 43 10 5 19 6 4 24 1 0 6 1 0 28 1 0 4 13 10 22 chain 30738 chr14 107043718 + 101702221 101702594 THE1B-int 1605 + 1037 1416 41362 156 0 6 217 chain 27173 chr14 107043718 + 101702601 101702964 THE1B 368 + 0 365 46008 15 2 0 21 0 5 62 0 1 24 0 1 39 1 0 24 2 0 173 chain 4189 chr14 107043718 + 101715676 101715724 MSTA 426 + 51 99 90202 48 chain 4555 chr14 107043718 + 101718407 101718488 MLT1B 390 + 291 374 88043 30 4 5 30 6 7 11 chain 4732 chr14 107043718 + 101725287 101725340 MLT2A2 560 + 507 560 87070 53 chain 3908 chr14 107043718 + 101726794 101726840 MER63A 208 + 87 133 92068 46 chain 27955 chr14 107043718 + 101728030 101728415 THE1C 375 + 0 373 44936 124 3 0 56 0 2 8 2 0 28 9 1 131 8 7 16 chain 35651 chr14 107043718 + 101753917 101754408 LTR2C 499 + 9 499 37630 18 25 18 5 0 3 374 8 11 61 chain 8011 chr14 107043718 + 101803226 101803331 U6 107 + 0 107 74860 47 0 3 44 1 0 13 chain 18892 chr14 107043718 + 101803744 101804068 L1MA1 4479 + 3885 4190 57645 62 9 5 120 7 6 28 3 1 35 1 0 9 1 0 12 23 13 14 chain 4413 chr14 107043718 + 101805382 101805431 L1MB3 1562 + 986 1035 88821 49 chain 7259 chr14 107043718 + 101828175 101828367 L1MB5 1630 + 1410 1601 76792 61 1 0 3 7 0 8 71 78 41 chain 41349 chr14 107043718 + 101941898 101942356 L1P1 4361 + 3236 3695 33761 446 0 1 12 chain 15482 chr14 107043718 + 101981970 101982311 MER1A 529 + 0 408 61682 18 69 117 21 18 19 101 5 4 6 5 0 75 1 0 4 1 26 17 chain 6067 chr14 107043718 + 102057816 102057883 MER4A1 472 + 24 91 80845 67 chain 48727 chr14 107043718 + 102064725 102065279 LTR6B 557 + 0 557 30041 91 0 4 306 1 0 156 chain 12852 chr14 107043718 + 102110244 102110402 THE1B-int 1605 + 273 426 65349 30 5 0 123 chain 23904 chr14 107043718 + 102233845 102234169 LTR21A 479 + 180 479 50938 77 25 0 222 chain 9406 chr14 107043718 + 102237501 102238058 HERVFH21-int 991 + 490 860 71690 42 1 0 3 1 0 17 330 174 22 36 28 10 19 3 21 4 0 8 1 0 42 chain 230453 chr14 107043718 + 102240807 102243870 HERVH-int 3825 + 763 3825 8737 6 6 0 9 1 0 130 18 26 208 44 50 26 8 0 6 7 0 107 9 7 92 9 0 10 1 5 157 0 1 4 1 0 122 0 1 300 1 0 60 0 5 86 0 13 14 0 3 197 0 1 4 6 5 69 20 21 281 11 0 227 1 0 76 0 3 80 0 2 125 1 0 523 chain 34976 chr14 107043718 + 102248154 102248952 LTR21A 479 + 0 479 38031 25 1 0 31 4 1 6 1 0 194 25 0 44 313 0 98 3 27 53 chain 22648 chr14 107043718 + 102298170 102298465 LTR12C 1709 + 784 1203 52911 34 0 40 228 6 90 27 chain 5406 chr14 107043718 + 102298522 102298584 LTR12C 1709 + 656 718 83677 62 chain 3729 chr14 107043718 + 102317091 102317130 tRNA-Ile-ATT 40 + 0 39 93419 39 chain 18310 chr14 107043718 + 102410287 102410480 SVA_F 1814 + 1621 1814 58351 193 chain 33682 chr14 107043718 + 102411288 102411700 LTR7 482 + 0 440 38941 51 4 0 202 12 43 9 0 1 134 chain 10174 chr14 107043718 + 102423106 102423589 MER30 238 + 57 238 70065 33 0 5 11 337 27 19 0 6 41 3 0 39 chain 23502 chr14 107043718 + 102534156 102534437 AluY 311 + 20 302 51592 111 3 4 167 chain 30001 chr14 107043718 + 102551037 102551407 MER41A 554 + 0 371 42054 69 2 1 35 0 2 264 chain 10299 chr14 107043718 + 102795645 102795849 MER21A 919 + 33 292 69809 48 7 60 34 48 50 67 chain 25278 chr14 107043718 + 102800896 102801165 AluYd8 298 + 0 269 48821 269 chain 26870 chr14 107043718 + 102812637 102812930 AluYk4 311 + 0 293 46443 293 chain 8826 chr14 107043718 + 102865855 102865963 U6 107 + 0 107 72926 94 1 0 13 chain 39271 chr14 107043718 + 102865963 102866427 L1PA7 6471 + 5995 6469 35172 321 0 13 132 3 0 8 chain 34725 chr14 107043718 + 103144173 103144663 LTR3B_ 500 + 6 500 38208 72 1 0 72 11 12 64 0 1 76 0 1 35 1 0 8 7 8 46 5 7 92 chain 210838 chr14 107043718 + 103165820 103169381 MER52-int 3354 + 139 3300 9322 38 1 0 37 1 0 26 24 20 17 11 7 15 7 5 11 2 1 20 1 0 22 1 0 31 1 0 22 3 0 27 1 0 61 2 1 14 2 0 9 2 0 8 10 7 66 1 0 117 3 1 77 3 0 14 2 1 10 14 8 164 3 1 54 1 0 86 0 1 39 0 17 92 2 0 410 10 8 95 8 9 5 1 0 151 332 6 37 2 8 304 13 18 69 8 15 335 39 16 8 1 0 48 3 2 9 2 1 39 1 0 4 1 0 13 1 0 32 3 1 13 1 0 42 4 2 31 1 0 31 2 0 9 2 0 11 2 0 4 1 0 33 1 0 14 2 0 40 3 2 14 12 8 6 2 0 27 1 0 5 2 1 6 1 0 17 1 0 32 1 0 6 1 0 7 3 0 3 1 0 7 chain 65839 chr14 107043718 + 103170797 103171770 HERVK14-int 1672 + 6 969 24992 24 1 0 10 1 0 28 35 34 204 6 5 17 13 11 128 9 8 93 1 0 40 6 5 206 7 6 144 chain 46940 chr14 107043718 + 103175983 103176906 LTR71B 605 + 0 605 30681 102 10 25 15 5 0 391 0 1 2 329 0 69 chain 21505 chr14 107043718 + 103190201 103190554 THE1D 372 + 16 372 54505 35 9 0 16 11 12 49 0 4 34 23 31 6 1 0 20 2 1 127 2 3 18 chain 46930 chr14 107043718 + 103206492 103207141 PABL_A 660 + 0 660 30688 127 1 0 176 0 1 101 11 22 81 0 2 39 1 0 12 9 8 91 chain 45283 chr14 107043718 + 103233997 103234510 MER9a2 513 + 0 513 31431 513 chain 251303 chr14 107043718 + 103235838 103238967 HERVK9-int 4720 + 36 4720 8192 13 8 5 4 1 0 66 2 1 7 1 0 30 1 0 228 7 8 585 3 1 260 9 10 242 0 924 231 51 689 1380 chain 43116 chr14 107043718 + 103238967 103239485 MER9a2 513 + 0 513 32704 12 10 4 26 0 1 470 chain 43959 chr14 107043718 + 103242345 103242918 MER4E 760 + 1 578 32154 22 0 1 127 13 15 87 0 1 60 0 1 54 0 2 75 1 0 95 2 0 37 chain 6471 chr14 107043718 + 103246925 103247003 MER51B 395 + 309 387 79444 78 chain 5802 chr14 107043718 + 103260912 103261011 HERVL66-int 1251 + 162 255 81915 19 16 10 64 chain 29523 chr14 107043718 + 103353804 103354114 AluYg6 310 + 0 310 42582 310 chain 7181 chr14 107043718 + 103368019 103368116 MSTD 398 + 288 386 77001 54 1 2 42 chain 17969 chr14 107043718 + 103409215 103409447 L1PA7 6471 + 6227 6470 58685 19 0 1 65 0 2 93 4 8 40 0 4 11 chain 18517 chr14 107043718 + 103865304 103865550 L1PA8 5853 + 5514 5753 58085 50 1 0 45 2 0 68 3 2 9 1 0 10 1 0 42 2 1 12 chain 118741 chr14 107043718 + 103983700 103985223 THE1B-int 1605 + 0 1597 15765 78 1 0 227 0 1 124 0 25 378 5 3 5 0 2 146 7 8 30 5 6 239 0 3 158 0 46 54 1 0 25 1 0 39 chain 26715 chr14 107043718 + 104030696 104030988 L1PA3long 6157 + 5865 6157 46666 292 chain 111643 chr14 107043718 + 104233562 104235055 THE1C-int 1605 + 16 1599 16857 38 9 11 45 0 54 97 4 7 177 9 16 79 0 4 197 3 12 348 8 3 15 0 2 10 2 0 5 4 18 171 0 1 231 1 2 40 chain 36411 chr14 107043718 + 104401108 104401582 MSTA-int 1630 + 34 502 37133 436 6 0 32 chain 23820 chr14 107043718 + 104420626 104421030 MER1A 529 + 0 444 51069 83 107 147 214 chain 2899 chr14 107043718 + 104622369 104622406 MER41C 542 + 18 57 100847 28 0 2 9 chain 39018 chr14 107043718 + 104622424 104622933 MER41C 542 + 0 532 35347 46 0 2 263 7 28 193 chain 4776 chr14 107043718 + 104656883 104657051 MLT1B 390 + 120 326 86820 25 97 135 46 chain 49165 chr14 107043718 + 104918949 104919548 LTR71B 605 + 1 605 29881 125 24 29 450 chain 6888 chr14 107043718 + 105000139 105000226 L1MA8 2339 + 1378 1465 77998 87 chain 41150 chr14 107043718 + 105032452 105033003 MER41A 554 + 0 554 33877 118 1 0 43 3 0 175 5 6 103 21 26 15 0 1 67 chain 40821 chr14 107043718 + 105038421 105038946 LTR2C 499 + 6 499 34081 166 49 16 247 0 1 63 chain 3877 chr14 107043718 + 105259106 105259162 L1ME2z 1083 + 630 685 92308 18 1 0 37 chain 87235 chr14 107043718 + 105273467 105274474 LTR5B 1012 + 0 1012 20185 107 1 4 826 0 2 73 chain 6312 chr14 107043718 + 105359950 105360040 Tigger3c 601 + 364 455 79958 26 5 6 59 chain 29412 chr14 107043718 + 105401395 105401732 L1PA5 6144 + 5797 6132 42717 234 1 0 95 1 0 6 chain 6050 chr14 107043718 + 105516482 105516673 L1MB8 1703 + 82 292 80896 29 62 95 11 3 0 6 25 14 55 chain 11946 chr14 107043718 + 105517389 105517598 LOR1b 457 + 0 233 66925 20 19 30 42 0 4 48 1 0 23 16 26 40 chain 26815 chr14 107043718 + 105517598 105517950 THE1A 353 + 0 353 46516 110 1 0 53 0 1 128 0 2 7 3 1 40 0 1 10 chain 24259 chr14 107043718 + 105548505 105548813 LTR12C 1709 + 803 1198 50407 34 1 0 194 0 88 79 chain 8827 chr14 107043718 + 105548813 105548976 LTR12C 1709 + 713 877 66400 35 8 47 42 1 0 7 43 6 27 chain 75887 chr14 107043718 + 105554876 105555804 LTR5B 1012 + 2 1012 22617 6 0 4 82 0 61 48 0 1 432 0 3 109 0 2 22 6 14 217 0 3 6 chain 132762 chr14 107043718 + 105673312 105674987 HERVK-int 6823 + 3734 5416 13757 4 1 0 521 2 1 307 0 1 433 0 5 133 1 0 24 20 24 229 chain 84711 chr14 107043718 + 105675199 105676203 LTR5B 1012 + 0 1012 20681 107 1 4 637 0 2 253 0 3 6 chain 112500 chr14 107043718 + 105788419 105790000 L1PB2 3958 + 2283 3838 16753 43 0 1 150 0 2 394 1 2 49 1 0 285 12 0 22 5 4 33 0 1 38 2 0 56 11 8 8 0 3 57 2 0 13 5 1 152 1 0 12 1 0 62 1 0 20 15 19 37 33 21 54 0 2 6 chain 4293 chr14 107043718 + 105796357 105796411 L1MA4 2864 + 2752 2804 89550 15 2 0 37 chain 21078 chr14 107043718 + 105828850 105829103 L1PBa 3878 + 2222 2475 55032 253 chain 12562 chr14 107043718 + 105829105 105829259 L1PBa 3878 + 1272 1426 65878 154 chain 66968 chr14 107043718 + 105942492 105943265 LTR17 781 + 0 774 24711 327 0 1 446 chain 47995 chr14 107043718 + 105962919 105963897 MER4E1 777 + 0 647 30300 25 2 0 194 357 0 103 7 26 85 0 1 106 2 10 97 chain 111309 chr14 107043718 + 105965185 105966563 HERVL-int 5654 + 4257 5654 16904 47 1 0 67 7 22 1020 6 11 230 chain 55498 chr14 107043718 + 106042492 106043292 MER11A 1151 + 72 1151 27723 104 8 0 23 3 1 16 0 15 58 14 11 26 37 0 62 0 1 128 0 1 42 0 312 24 1 0 5 1 2 91 0 1 90 1 0 66 chain 38515 chr14 107043718 + 106087081 106087625 LTR22 571 + 0 533 35699 77 2 1 139 0 1 218 47 36 61 chain 28794 chr14 107043718 + 106112754 106113163 L1PA8 5853 + 5450 5853 43644 114 2 1 44 2 0 69 12 11 48 7 6 17 2 1 92 chain 76032 chr14 107043718 + 106161411 106162392 L1PA7 6471 + 2539 3532 22558 101 5 0 34 1 3 257 0 16 169 1 0 4 3 0 289 0 4 74 7 6 36 chain 10561 chr14 107043718 + 106189452 106189608 HERVL-int 5654 + 5495 5654 69301 37 15 16 94 0 2 10 chain 18433 chr14 107043718 + 106266982 106267203 L1PA4 6152 + 5914 6137 58191 191 0 2 30 chain 21108 chr14 107043718 + 106299181 106299440 L1PA7 6471 + 4102 4360 54998 97 1 0 161 chain 38455 chr14 107043718 + 106337997 106338425 L1PA4 6152 + 5708 6136 35752 428 chain 7350 chr14 107043718 + 106381867 106381955 HERVL-int 5654 + 5550 5640 76521 8 0 2 80 chain 14314 chr14 107043718 + 106409072 106409279 L1PA6 6164 + 5955 6160 63173 47 8 15 7 3 0 5 4 0 125 2 0 6 chain 239310 chr14 107043718 + 106427215 106429871 L1PA4 6152 + 3078 5736 8487 20 0 2 2636 chain 42151 chr14 107043718 + 106438148 106438658 MER9a2 513 + 0 513 33277 225 0 1 29 10 9 190 0 2 37 0 1 19 chain 12149 chr14 107043718 + 106462312 106462452 L1PA4 6152 + 5472 5611 66576 49 1 0 90 chain 46637 chr14 107043718 + 106462453 106462972 L1PA4 6152 + 5611 6133 30801 359 0 3 160 chain 75277 chr14 107043718 + 106539393 106540357 LTR13_ 950 + 2 950 22775 279 0 1 78 7 0 247 23 12 135 2 1 49 10 12 134 chain 8667 chr14 107043718 + 106636671 106636761 5S 121 + 0 90 73301 90 chain 21365 chr14 107043718 + 106654006 106654285 AluY 311 + 36 302 54683 95 1 2 45 0 1 109 15 0 14 chain 35527 chr14 107043718 + 106656726 106657268 LTR22 571 + 0 568 37698 72 7 6 80 0 1 69 0 36 7 0 1 99 5 7 58 47 36 64 5 6 9 1 0 8 2 0 9 chain 16615 chr14 107043718 + 106673596 106673806 L1PA6 6164 + 5952 6160 60252 202 2 0 6 chain 8447 chr14 107043718 + 106698048 106698212 LTR22B 500 + 68 231 73804 55 5 3 14 34 35 56 chain 78063 chr14 107043718 + 106732832 106733722 MER11D 897 + 0 897 22084 424 0 1 149 0 6 317 chain 8447 chr14 107043718 + 106744519 106744683 LTR22B 500 + 68 231 73803 55 5 3 14 34 35 56 chain 43242 chr14 107043718 + 106777596 106778120 MER11C 1089 + 548 1073 32618 25 27 27 243 0 1 229 chain 67645 chr14 107043718 + 106797498 106798260 L1PA4 6152 + 4744 5506 24535 762 chain 28485 chr14 107043718 + 106806697 106807019 L1PA7 6471 + 6143 6465 44150 322 chain 3002 chr14 107043718 + 106809222 106809254 MLT2C1 407 + 48 80 99826 32 chain 3330 chr14 107043718 + 106813902 106813939 MER52C 1267 + 875 912 96763 37 chain 69940 chr14 107043718 + 106819021 106819787 L1PA3long 6157 + 5386 6157 24008 525 0 5 241 chain 32426 chr14 107043718 + 106864241 106864600 L1P1 4361 + 3706 4065 40017 359 chain 3002 chr14 107043718 + 106871084 106871116 U3 216 + 1 33 99813 32 chain 37437 chr14 107043718 + 106876634 106877144 LTR15 485 + 0 485 36450 107 1 0 170 0 4 61 4 0 37 0 2 73 28 3 24 1 0 4 chain 28858 chr14 107043718 + 106877517 106878009 HERV1_LTRa 508 + 0 508 43542 27 46 53 10 1 0 19 0 3 94 0 1 21 25 14 27 19 36 203 chain 8990 chr14_GL000009v2_random 201709 + 89801 89925 MSTA-int 1630 + 1488 1611 72578 28 6 5 90 chain 2621 chr14_GL000009v2_random 201709 + 97842 97893 L1MCa 1829 + 1766 1812 102869 25 11 6 15 chain 25906 chr14_GL000009v2_random 201709 + 130128 130508 L1MA3 4352 + 3059 3445 47853 41 8 16 70 8 7 209 4 3 40 chain 21296 chr14_GL000009v2_random 201709 + 165479 165724 L1PA4 6152 + 5900 6152 54771 239 0 7 6 chain 135631 chr14_GL000009v2_random 201709 + 194237 195815 L1PA4 6152 + 4383 5972 13473 102 0 5 544 8 9 179 2 3 75 1 5 667 chain 120557 chr14_GL000009v2_random 201709 + 199394 200815 SVA_D 2077 + 18 2071 15435 13 23 5 441 1 3 75 0 40 78 0 37 78 0 80 47 1 0 1 0 490 38 0 1 5 1 2 619 chain 276038 chr14_GL000225v1_random 211173 + 144679 147967 L1PA4 6152 + 2866 6151 7550 330 16 14 4 0 1 396 0 1 1696 11 7 323 7 7 60 0 1 445 chain 3866 chr14_GL000225v1_random 211173 + 183255 183306 U2 167 + 0 56 92377 45 0 5 6 chain 452236 chr14_KI270722v1_random 194050 + 8510 13824 L1PA4 6152 + 15 5351 4329 111 1 15 892 0 1 286 0 3 7 8 5 110 1 2 982 0 3 769 0 1 422 0 1 57 1 0 520 0 2 1147 chain 24099 chr14_KI270722v1_random 194050 + 41033 41317 LTR14A 344 + 0 344 50649 42 0 60 242 chain 134491 chr14_KI270722v1_random 194050 + 41412 43093 HERVK14-int 1672 + 1 1665 13596 28 1 0 12 1 0 45 1 0 220 1 0 27 2 0 235 1 0 107 0 1 111 0 1 28 4 3 163 1 0 79 3 1 9 3 0 35 1 0 202 0 1 18 0 1 88 1 0 63 1 0 31 2 0 9 1 0 140 1 0 6 chain 37343 chr14_KI270722v1_random 194050 + 43093 43539 MER9a2 513 + 0 513 36518 22 0 1 204 1 67 219 chain 152055 chr14_KI270722v1_random 194050 + 44861 46900 HERVK9-int 4720 + 37 3614 12223 12 8 5 4 1 0 66 1 0 8 1 0 11 21 20 509 17 0 303 7 8 513 0 924 230 53 690 274 chain 422254 chr14_KI270722v1_random 194050 + 54053 59244 L1PA7 6471 + 1130 6465 4851 128 1 41 42 0 1 211 0 1 7 2 0 680 0 4 236 14 12 4 0 1 22 0 2 44 1 11 62 1 2 248 0 4 652 1 5 122 0 70 65 0 4 6 3 0 470 0 1 465 0 1 314 0 1 438 0 3 110 11 15 672 0 7 7 9 3 134 2 0 7 chain 128099 chr14_KI270722v1_random 194050 + 123898 125416 L1PA5 6144 + 4250 5774 14267 921 7 13 111 0 8 429 8 0 42 chain 34154 chr14_KI270722v1_random 194050 + 181153 181645 LTR61 567 + 0 489 38595 25 0 1 24 5 16 73 8 13 71 9 1 142 12 0 123 chain 74870 chr14_KI270722v1_random 194050 + 181663 182656 LTR13 1007 + 0 1007 22874 381 4 5 54 8 9 42 13 25 167 0 2 14 2 0 116 0 1 159 2 1 31 chain 9244 chr14_GL000194v1_random 191469 + 79596 79797 MSTA-int 1630 + 23 224 72032 83 3 0 6 1 0 6 68 72 34 chain 16658 chr14_GL000194v1_random 191469 + 110433 110780 MER57-int 2662 + 2332 2647 60202 92 18 12 68 36 21 12 0 1 5 9 6 26 29 23 27 3 0 22 chain 27368 chr14_GL000194v1_random 191469 + 120362 120741 L1MA3 4352 + 3059 3445 45741 41 8 16 286 4 3 40 chain 29655 chr14_GL000194v1_random 191469 + 165380 165700 AluYb8 318 + 0 318 42426 132 2 0 186 chain 36735 chr14_GL000194v1_random 191469 + 175930 176381 L1PA5 6144 + 5688 6144 36937 122 1 2 77 0 4 251 chain 67750 chr14_GL000194v1_random 191469 + 184779 185572 L1PA4 6152 + 4383 5181 24506 102 0 5 691 chain 126258 chr14_GL000194v1_random 191469 + 189987 191469 SVA_D 2077 + 40 2056 14514 441 0 2 242 39 0 73 0 517 30 0 2 9 0 50 38 0 1 9 0 1 601 chain 69246 chr14_KI270723v1_random 38115 + 19959 20701 L1HS 6032 + 5287 6029 24169 742 chain 27591 chr14_KI270723v1_random 38115 + 23499 23838 LTR17 781 + 445 781 45463 325 1 0 4 2 0 7 chain 109120 chr14_KI270724v1_random 39555 + 11689 13500 L1PA8 5853 + 4382 5844 17167 215 5 6 77 0 4 170 0 5 45 0 1 14 0 2 83 0 3 48 357 0 26 7 6 477 1 0 29 1 0 16 2 0 48 8 9 10 4 3 8 2 1 52 2 1 18 3 2 83 chain 192304 chr14_KI270725v1_random 172810 + 10925 13162 L1P1 4361 + 522 2753 10010 52 1 0 118 7 0 66 0 1 521 1 0 246 0 1 1153 0 1 72 chain 23791 chr14_KI270725v1_random 172810 + 80556 80899 MLT2A1 477 + 4 385 51121 138 0 1 26 1 5 106 0 25 40 19 27 13 chain 114147 chr14_KI270726v1_random 43739 + 8941 10232 L1PA4 6152 + 3852 5149 16535 88 0 1 413 0 4 306 0 1 484 chain 519420 chr15 101991189 + 17013619 17019737 L1PA3long 6157 + 9 6153 2296 18 13 0 8 14 27 380 4 5 801 0 1 353 0 1 577 0 1 144 0 4 130 0 15 818 0 1 2063 0 1 26 0 1 18 6 5 249 0 1 71 0 2 89 1 0 79 1 0 255 chain 71162 chr15 101991189 + 17042730 17043565 L1PA3long 6157 + 5314 6150 23728 689 11 12 135 chain 53142 chr15 101991189 + 17050762 17051343 L1PA2 6032 + 3950 4532 28516 562 0 1 19 chain 42042 chr15 101991189 + 17071364 17071851 L1PA3long 6157 + 5669 6157 33336 359 0 1 128 chain 59055 chr15 101991189 + 19818200 19818827 L1HS 6032 + 4181 4808 26648 627 chain 73775 chr15 101991189 + 19824533 19825351 L1PA3long 6157 + 5332 6150 23146 818 chain 83149 chr15 101991189 + 19866099 19867111 LTR5B 1012 + 0 1012 20994 134 18 4 71 1 10 165 0 1 294 0 1 105 0 3 224 chain 3544 chr15 101991189 + 19869598 19869643 L1MB4 1306 + 711 756 94908 45 chain 356518 chr15 101991189 + 19890348 19894324 L1PA2 6032 + 2037 6014 5841 957 0 1 3019 chain 458585 chr15 101991189 + 19948227 19953568 L1PA4 6152 + 10 5357 4165 1442 0 5 717 0 1 515 0 1 341 0 2 648 4 0 669 0 4 134 4 1 867 chain 11562 chr15 101991189 + 19977334 19977490 HERVL-int 5654 + 5495 5654 67639 49 3 4 95 0 2 9 chain 57892 chr15 101991189 + 19985665 19986398 L1PA7 6471 + 5735 6466 27001 351 0 1 50 3 2 168 1 2 149 3 0 8 chain 23343 chr15 101991189 + 19989851 19990122 AluY 311 + 6 277 51858 126 0 1 34 1 0 110 chain 8265 chr15 101991189 + 20001667 20001770 MER30B 195 + 89 192 74254 103 chain 46640 chr15 101991189 + 20039062 20040054 MER4E1 777 + 0 647 30799 25 2 0 194 380 0 103 7 26 85 0 1 106 1 9 74 0 9 15 chain 111161 chr15 101991189 + 20041342 20042724 HERVL-int 5654 + 4257 5654 16920 47 1 0 67 7 22 893 0 1 367 chain 22659 chr15 101991189 + 20042724 20043123 MLT2A2 560 + 0 513 52888 168 12 10 15 33 34 68 9 118 45 23 27 16 0 2 10 chain 40024 chr15 101991189 + 20059850 20060315 L1PA5 6144 + 5686 6144 34636 452 7 0 6 chain 66500 chr15 101991189 + 20128935 20129680 L1PA5 6144 + 5399 6144 24821 745 chain 28148 chr15 101991189 + 20224030 20224407 THE1C 375 + 0 375 44639 125 3 0 15 2 0 84 5 8 74 0 1 43 1 0 25 chain 545805 chr15 101991189 + 20311030 20317051 L1PA2 6032 + 2 6032 983 249 6 5 217 15 19 328 0 4 1366 3 1 950 0 4 1987 2 1 876 0 1 22 chain 89723 chr15 101991189 + 20375374 20376540 L1PA8 5853 + 4667 5823 19727 336 5 0 6 1 2 511 0 1 43 1 0 34 10 8 71 2 1 16 1 0 44 2 1 16 7 6 60 chain 100635 chr15 101991189 + 20383545 20384707 L1PA3long 6157 + 4985 6149 18223 395 3 5 618 11 11 135 chain 4690 chr15 101991189 + 20434516 20434573 MER2 342 + 204 261 87322 57 chain 3517 chr15 101991189 + 20479801 20479966 MER58B 340 + 159 323 95126 4 0 1 19 82 82 12 16 14 32 chain 5664 chr15 101991189 + 20570980 20571043 7SLRNA 320 + 113 176 82495 63 chain 11321 chr15 101991189 + 20608216 20608345 LTR8 732 + 0 129 68050 129 chain 501177 chr15 101991189 + 20628857 20635238 L1PA7 6471 + 77 6459 3094 16 1 8 142 18 1 121 1 4 43 45 41 61 0 1 426 4 5 142 13 17 81 0 1 239 1 0 341 0 1 185 0 12 97 0 1 4 1 0 188 0 2 10 1 0 230 0 2 6 17 15 57 10 9 54 4 6 508 1 2 237 0 1 221 8 8 81 0 1 298 2 0 6 0 4 186 14 14 210 3 0 64 0 1 461 2 0 70 10 1 146 0 1 447 2 0 845 chain 7367 chr15 101991189 + 20738678 20738769 U6 107 + 0 91 76490 91 chain 6986 chr15 101991189 + 20739515 20739628 L1PA16 3655 + 3402 3573 77653 44 0 1 12 12 69 45 chain 27053 chr15 101991189 + 20788833 20789401 LTR4 552 + 34 552 46195 30 40 49 68 1 0 11 12 11 115 78 7 50 51 66 23 1 0 88 chain 32803 chr15 101991189 + 20827646 20828113 L1PA7 6471 + 2277 2720 39665 160 0 1 5 1 0 189 28 0 51 4 5 17 0 3 12 chain 18738 chr15 101991189 + 20829302 20829522 L1PA7 6471 + 5369 5589 57860 220 chain 55838 chr15 101991189 + 20829526 20830264 L1PA7 6471 + 5594 6342 27617 27 1 0 51 0 1 11 27 35 589 1 3 31 chain 71185 chr15 101991189 + 20907616 20908392 L1PA3long 6157 + 5370 6149 23719 126 0 3 650 chain 9581 chr15 101991189 + 20909258 20909377 MER4A1 472 + 0 121 71306 99 0 2 20 chain 55751 chr15 101991189 + 20984264 20984939 L1PA7 6471 + 5784 6457 27647 449 2 0 57 2 0 5 13 15 147 chain 32878 chr15 101991189 + 20996204 20996572 L1PA4 6152 + 5774 6143 39603 124 1 0 231 0 2 12 chain 8387 chr15 101991189 + 21008329 21008432 MER30B 195 + 89 192 73931 103 chain 46571 chr15 101991189 + 21045703 21046764 MER4E1 777 + 0 647 30819 25 2 0 194 449 0 103 7 26 85 0 1 106 1 9 74 0 9 15 chain 110934 chr15 101991189 + 21048052 21049434 HERVL-int 5654 + 4257 5654 16949 47 1 0 67 7 22 892 0 1 368 chain 61762 chr15 101991189 + 21069936 21070643 L1PA5 6144 + 5435 6143 25925 567 0 1 140 chain 66500 chr15 101991189 + 21135464 21136209 L1PA5 6144 + 5399 6144 24820 745 chain 83681 chr15 101991189 + 21295736 21296671 L1PA4 6152 + 5203 6143 20873 15 0 1 85 0 4 835 chain 7367 chr15 101991189 + 21307748 21307839 U6 107 + 0 91 76489 91 chain 6986 chr15 101991189 + 21308585 21308698 L1PA16 3655 + 3402 3573 77652 44 0 1 12 12 69 45 chain 42819 chr15 101991189 + 21314695 21315168 L1PA4 6152 + 5135 5608 32877 473 chain 27053 chr15 101991189 + 21357923 21358491 LTR4 552 + 34 552 46194 30 40 49 68 1 0 11 12 11 115 78 7 50 51 66 23 1 0 88 chain 89263 chr15 101991189 + 21396738 21403831 L1PA7 6471 + 2277 6342 19810 132 19 18 10 0 1 5 1 0 189 27 0 51 4 5 20 0 3 9 5664 2649 220 4 5 27 1 0 53 0 1 18 18 26 589 1 3 31 chain 72000 chr15 101991189 + 21481278 21482057 L1PA3long 6157 + 5370 6149 23538 779 chain 9581 chr15 101991189 + 21482923 21483042 MER4A1 472 + 0 121 71305 99 0 2 20 chain 56105 chr15 101991189 + 21558003 21558696 L1PA7 6471 + 5784 6468 27536 449 2 0 57 2 0 5 13 15 147 7 0 11 chain 33442 chr15 101991189 + 21569953 21570320 L1PA4 6152 + 5774 6143 39141 355 0 2 12 chain 18881 chr15 101991189 + 21665307 21665552 L1PA15 4387 + 3210 3455 57665 15 1 0 119 0 1 110 chain 55147 chr15 101991189 + 21766863 21767570 L1PA10 4194 + 3447 4161 27826 166 1 2 33 0 4 226 1 0 125 12 20 79 6 5 10 3 0 33 1 0 11 chain 90862 chr15 101991189 + 21834135 21841219 L1PA7 6471 + 2277 6342 19527 160 0 1 5 1 0 189 19 0 51 4 5 20 0 3 9 5664 2649 220 4 5 27 1 0 51 0 1 11 27 35 589 1 3 31 chain 71390 chr15 101991189 + 21918582 21919358 L1PA3long 6157 + 5370 6149 23677 126 0 3 650 chain 9581 chr15 101991189 + 21920224 21920343 MER4A1 472 + 0 121 71304 99 0 2 20 chain 55769 chr15 101991189 + 21995296 21995989 L1PA7 6471 + 5784 6468 27639 449 2 0 57 2 0 5 13 15 147 7 0 11 chain 18881 chr15 101991189 + 22107780 22108025 L1PA15 4387 + 3210 3455 57664 15 1 0 119 0 1 110 chain 55147 chr15 101991189 + 22209428 22210135 L1PA10 4194 + 3447 4161 27825 166 1 2 33 0 4 226 1 0 125 12 20 79 6 5 10 3 0 33 1 0 11 chain 29222 chr15 101991189 + 22221787 22222545 PABL_A 660 + 83 619 43015 83 11 15 24 15 16 20 0 1 9 7 76 108 304 2 42 1 6 134 chain 52349 chr15 101991189 + 22247723 22248417 THE1D-int 1627 + 895 1627 28776 91 4 0 201 11 50 301 0 1 37 2 1 13 0 3 34 chain 46912 chr15 101991189 + 22511023 22511731 L1MA3 4352 + 1504 2208 30695 24 1 0 47 10 7 28 17 16 27 1 0 118 2 1 10 1 2 5 0 3 99 1 0 89 2 1 77 5 6 144 chain 90818 chr15 101991189 + 22595171 22596236 MER11C 1089 + 0 1073 19532 225 0 5 356 12 13 394 0 2 78 chain 57292 chr15 101991189 + 22643155 22643958 MER4E1 777 + 0 777 27160 24 0 1 146 4 3 19 1 0 133 5 6 169 15 0 4 11 0 40 15 13 209 0 2 8 chain 5976 chr15 101991189 + 22791179 22791248 MER50 708 + 495 564 81172 69 chain 3189 chr15 101991189 + 22794305 22794340 L1MB3 1562 + 1390 1425 97983 35 chain 24478 chr15 101991189 + 22809757 22810056 AluSp 311 + 0 292 50066 120 4 0 87 3 0 85 chain 20480 chr15 101991189 + 23007128 23007400 AluY 311 + 1 293 55802 41 9 15 59 0 1 15 0 1 5 1 13 142 chain 40163 chr15 101991189 + 23016513 23017249 L1MA5A 2387 + 1576 2288 34546 60 1 0 31 1 0 56 1 0 18 0 3 225 1 2 51 0 1 5 91 91 36 2 0 15 5 7 10 1 0 28 50 21 19 1 5 28 chain 211023 chr15 101991189 + 23096872 23099259 L1PA5 6144 + 3757 6144 9316 173 1 2 2156 20 19 37 chain 5664 chr15 101991189 + 23363366 23363429 7SLRNA 320 + 113 176 82494 63 chain 110969 chr15 101991189 + 23478776 23480402 MER61-int 3695 + 0 2515 16941 28 7 0 9 25 18 30 16 14 36 0 4 59 39 0 71 9 8 36 27 20 59 0 1 19 15 1 59 0 1 66 0 945 296 5 6 190 5 3 184 0 2 18 0 3 47 0 1 141 0 10 130 chain 3356 chr15 101991189 + 23488631 23488695 L1ME1 1623 + 723 782 96528 22 12 6 16 0 1 14 chain 3644 chr15 101991189 + 23548089 23548132 MER74A 558 + 30 73 94069 43 chain 41680 chr15 101991189 + 23555009 23555953 L1PA16 3655 + 2268 2883 33566 169 34 33 9 327 0 188 1 0 4 6 5 104 1 2 101 chain 49019 chr15 101991189 + 23586041 23586628 LTR10C 591 + 0 591 29945 94 3 5 411 0 2 79 chain 44039 chr15 101991189 + 23628599 23629170 LTR22 571 + 22 571 32107 21 0 1 210 23 0 317 chain 2856 chr15 101991189 + 23673363 23673393 U2 167 + 0 30 101176 30 chain 167579 chr15 101991189 + 23679601 23681499 L1PA5 6144 + 4240 6142 11239 181 1 2 407 0 1 339 0 1 311 7 7 494 0 1 158 chain 544643 chr15 101991189 + 23714074 23720093 L1PA3long 6157 + 4 6157 1049 148 0 1 614 9 137 809 0 1 26 3 0 3546 0 7 864 chain 2971 chr15 101991189 + 23720674 23720707 LOR1b 457 + 40 73 100187 33 chain 43281 chr15 101991189 + 23756843 23757427 LTR12_ 688 + 0 688 32590 256 32 33 68 0 103 228 chain 3489 chr15 101991189 + 23757480 23757518 MER21-int 1364 + 89 127 95327 38 chain 25882 chr15 101991189 + 23765663 23766313 THE1A 353 + 10 353 47894 8 0 1 91 1 0 123 309 2 118 chain 120810 chr15 101991189 + 23766371 23767904 THE1A-int 1579 + 58 1579 15374 84 4 5 58 0 1 475 17 6 418 7 9 189 5 2 21 0 1 46 4 0 131 1 2 73 chain 27712 chr15 101991189 + 23767904 23768245 THE1A 353 + 0 341 45299 84 0 1 25 1 0 231 chain 47288 chr15 101991189 + 23770875 23771399 L1PA3long 6157 + 5633 6156 30541 376 1 0 147 chain 120640 chr15 101991189 + 23802730 23804159 LTR12C 1709 + 0 1709 15421 126 2 1 80 0 1 442 0 278 184 1 0 6 1 0 106 0 4 481 chain 18522 chr15 101991189 + 23909228 23909469 AluSc 308 + 10 264 58078 37 4 10 66 1 0 3 1 0 108 0 9 21 chain 3904 chr15 101991189 + 23950727 23950773 L1MCa 1829 + 1577 1623 92094 46 chain 29106 chr15 101991189 + 23962441 23962990 LTR12F 595 + 0 595 43178 54 0 4 33 25 124 151 0 1 12 49 51 104 71 11 50 chain 29090 chr15 101991189 + 23993727 23994043 L1PA3long 6157 + 4820 5136 43207 316 chain 36948 chr15 101991189 + 24018592 24018997 L1PA3long 6157 + 5742 6147 36774 405 chain 457702 chr15 101991189 + 24043204 24048543 L1PA4 6152 + 10 5349 4190 762 5 7 264 0 2 766 0 2 523 6 0 292 0 1 541 0 1 518 2 0 205 21 15 442 0 4 529 2 0 419 1 5 41 chain 83285 chr15 101991189 + 24137880 24138766 L1HS 6032 + 5147 6032 20967 12 1 0 873 chain 2862 chr15 101991189 + 24196148 24196185 L1MCa 1829 + 1577 1614 101134 37 chain 50468 chr15 101991189 + 24216036 24216621 LTR10C 591 + 0 591 29391 538 0 6 47 chain 50811 chr15 101991189 + 24318331 24318922 LTR10C 591 + 0 591 29276 591 chain 51492 chr15 101991189 + 24525714 24526305 LTR10C 591 + 0 591 29049 591 chain 12258 chr15 101991189 + 24589054 24589209 THE1D-int 1627 + 12 169 66358 77 0 2 78 chain 3676 chr15 101991189 + 24626642 24626692 THE1C 375 + 11 63 93772 18 1 3 31 chain 21030 chr15 101991189 + 24626719 24626967 THE1C-int 1605 + 1348 1596 55083 248 chain 27262 chr15 101991189 + 24626977 24627354 THE1C 375 + 1 375 45878 63 0 1 39 24 21 55 0 1 9 1 0 160 1 0 25 chain 52907 chr15 101991189 + 24628523 24629436 MER4E1 777 + 0 769 28606 24 0 1 164 1 0 40 4 5 43 158 22 52 0 1 124 8 7 50 35 26 210 chain 2147 chr15 101991189 + 24628891 24628914 MER4E1 777 + 256 279 105559 23 chain 8129 chr15 101991189 + 24640267 24640365 LTR38C 690 + 6 104 74573 98 chain 48640 chr15 101991189 + 24682867 24683446 LTR10C 591 + 0 591 30072 218 0 4 112 0 1 173 0 2 13 6 11 57 chain 22678 chr15 101991189 + 24693746 24693991 L1PA2 6032 + 5787 6032 52855 245 chain 32921 chr15 101991189 + 24694002 24694375 L1PA4 6152 + 5768 6143 39572 50 0 1 83 0 1 240 chain 4130 chr15 101991189 + 24709680 24709724 L1P2 5180 + 909 953 90574 44 chain 115455 chr15 101991189 + 24721715 24723082 L1PA7 6471 + 5092 6470 16320 261 0 1 152 1 0 117 0 6 343 0 1 58 0 4 435 chain 7284 chr15 101991189 + 24816271 24816355 MSTB 430 + 0 84 76721 84 chain 7438 chr15 101991189 + 24971635 24971736 MER85 139 + 25 139 76279 71 1 14 29 chain 21660 chr15 101991189 + 25166554 25166832 AluSc 308 + 18 286 54279 113 11 1 154 chain 526906 chr15 101991189 + 25255613 25261749 L1PA5 6144 + 0 6132 1962 119 1 15 106 0 1 359 5 9 560 9 0 134 0 1 142 0 4 8 30 2 2221 0 1 88 0 1 143 1 2 478 0 2 898 1 4 69 0 1 764 chain 30494 chr15 101991189 + 25292637 25292978 L1PA4 6152 + 5806 6152 41574 335 0 5 6 chain 36646 chr15 101991189 + 25292978 25293397 L1PA5 6144 + 5653 6074 36986 159 0 1 176 7 8 77 chain 3707 chr15 101991189 + 25293397 25293440 L1PA5 6144 + 6100 6143 93560 43 chain 121612 chr15 101991189 + 25298519 25299889 L1PA3long 6157 + 4784 6157 15238 436 0 10 411 14 6 177 0 1 332 chain 22133 chr15 101991189 + 25409906 25410153 L1PA3long 6157 + 5909 6157 53655 100 1 2 146 chain 4214 chr15 101991189 + 25511502 25511553 MLT1D 503 + 80 131 90040 51 chain 11571 chr15 101991189 + 25551295 25551475 L1MD2 1676 + 914 1095 67622 94 1 0 41 19 21 25 chain 36419 chr15 101991189 + 25636095 25636567 MER9B 498 + 0 493 37127 8 1 0 257 0 21 14 23 23 121 0 1 48 chain 264239 chr15 101991189 + 25637468 25640740 HERVK9-int 4720 + 334 3615 7848 844 7 2 490 2 1 98 7 4 249 30 30 84 4 8 114 0 13 237 2 3 1104 chain 37817 chr15 101991189 + 25641784 25642244 MER9B 498 + 14 498 36193 251 0 21 46 0 1 18 0 1 92 0 1 53 chain 51567 chr15 101991189 + 25656650 25657363 LTR17 781 + 0 754 29007 59 1 0 102 1 0 72 1 0 15 8 7 72 1 0 201 13 14 35 0 1 105 14 58 13 chain 25206 chr15 101991189 + 25695356 25695636 AluY 311 + 10 290 48936 280 chain 17958 chr15 101991189 + 25698379 25698647 Tigger2 2703 + 2441 2703 58695 135 0 2 85 18 12 9 5 3 16 chain 41641 chr15 101991189 + 25757708 25759240 LTR10F 562 + 0 562 33599 38 0 2 191 25 0 31 960 15 198 2 0 87 chain 8279 chr15 101991189 + 25758209 25758307 LTR10F 562 + 111 209 74218 98 chain 4441 chr15 101991189 + 25758321 25758419 LTR10F 562 + 111 209 88650 26 28 0 28 2 30 14 chain 5902 chr15 101991189 + 25758793 25758861 LTR10F 562 + 111 179 81479 68 chain 5631 chr15 101991189 + 25758861 25758936 LTR10F 562 + 183 261 82656 49 0 3 26 chain 46925 chr15 101991189 + 25761374 25761947 THE1C-int 1605 + 1018 1592 30690 132 0 1 160 0 1 276 1 0 4 chain 5640 chr15 101991189 + 25817982 25818058 HY4 93 + 0 84 82600 50 0 9 7 1 0 18 chain 17999 chr15 101991189 + 25856123 25856441 THE1D 372 + 0 332 58653 47 3 0 20 23 24 47 0 1 23 26 23 6 0 2 26 3 19 94 chain 40405 chr15 101991189 + 25878643 25879151 L1PA8 5853 + 5352 5853 34380 212 1 0 44 2 0 71 1 0 10 1 0 11 0 1 4 1 0 39 1 0 16 1 0 93 chain 3324 chr15 101991189 + 25956409 25956511 MER53 195 - 66 171 96814 18 3 5 10 37 38 34 chain 23889 chr15 101991189 + 25986785 25987124 LTR7B 505 + 0 490 50960 105 1 11 55 1 0 4 8 77 26 1 75 88 14 13 36 chain 8118 chr15 101991189 + 26057339 26057435 LTR12C 1709 + 769 905 74594 49 0 40 47 chain 19154 chr15 101991189 + 26057446 26058189 LTR12C 1709 + 758 1514 57395 79 1 0 116 51 1 15 0 41 27 336 389 14 0 1 11 76 45 17 chain 9894 chr15 101991189 + 26067338 26067465 MER85 139 + 2 139 70626 87 0 10 40 chain 24377 chr15 101991189 + 26100905 26101207 MER51E 476 + 0 301 50203 269 5 4 28 chain 44527 chr15 101991189 + 26187906 26188480 L1PA7 6471 + 5655 6271 31814 201 0 37 234 0 3 10 1 0 46 0 4 22 2 1 58 chain 64767 chr15 101991189 + 26216689 26217577 L1PA8 5853 + 5009 5853 25246 13 36 0 124 2 1 417 1 0 46 2 0 69 1 0 9 1 0 12 1 0 40 2 1 19 1 0 76 1 2 15 chain 3732 chr15 101991189 + 26236547 26236612 L1MA4 2864 + 2507 2565 93378 8 6 0 4 1 0 46 chain 67694 chr15 101991189 + 26267248 26267987 L1PA5 6144 + 5405 6144 24520 739 chain 22258 chr15 101991189 + 26289951 26290271 LOR1b 457 + 50 372 53467 18 0 1 77 21 0 25 1 9 97 1 16 4 1 0 75 chain 32117 chr15 101991189 + 26314506 26314942 MER57A1 433 + 0 433 40256 279 4 5 84 12 8 57 chain 114724 chr15 101991189 + 26346302 26347805 THE1B-int 1605 + 0 1605 16425 12 6 8 138 1 0 274 8 33 49 0 1 6 1 0 24 0 7 385 0 1 191 1 69 350 1 0 47 0 1 9 chain 7409 chr15 101991189 + 26352966 26353261 Tigger4b 360 + 0 232 76374 17 8 0 8 0 1 6 170 112 77 0 2 9 chain 4329 chr15 101991189 + 26412407 26412452 tRNA-Arg-CGY_ 50 + 0 45 89300 45 chain 21683 chr15 101991189 + 26414797 26415080 L1MA3 4352 + 3819 4094 54250 78 8 0 197 chain 519510 chr15 101991189 + 26531055 26537615 L1PA7 6471 + 3 6463 2293 225 0 15 14 21 2 16 5 1 130 1 2 152 6 7 242 0 4 561 0 1 359 4 9 12 1 0 75 5 6 431 3 0 81 0 1 283 0 1 233 1 0 23 0 4 287 1 3 12 0 1 369 55 12 216 0 3 185 0 1 18 1 0 574 1 0 4 1 0 291 21 2 551 12 7 105 1 0 15 0 1 46 36 0 25 9 8 508 1 2 318 7 0 6 chain 4219 chr15 101991189 + 26577692 26577744 Tigger3b 1229 + 56 108 90017 52 chain 4779 chr15 101991189 + 26611564 26611665 LOR1-int 1871 + 1316 1417 86800 38 9 0 8 8 7 22 0 10 16 chain 239211 chr15 101991189 + 26617000 26619678 L1PA3long 6157 + 3413 6157 8491 255 4 92 14 22 1 1256 1 0 1126 chain 48593 chr15 101991189 + 26633426 26633987 LTR6B 557 + 0 557 30089 15 0 1 30 1 0 499 4 0 12 chain 31718 chr15 101991189 + 26719882 26720330 LTR7 482 + 0 475 40561 101 20 14 79 0 1 6 1 0 29 0 31 104 1 2 52 13 14 42 chain 15036 chr15 101991189 + 26810395 26810609 L1PREC2 3366 + 2135 2346 62219 116 16 13 82 chain 6277 chr15 101991189 + 26812363 26812430 L1PA10 4194 + 4010 4077 80074 67 chain 59254 chr15 101991189 + 26819124 26820211 L1MA1 4479 + 3159 4190 26583 19 4 0 47 0 1 37 5 0 48 5 0 18 65 61 67 5 4 57 1 0 12 9 10 21 0 1 152 1 0 24 20 17 74 23 20 10 1 0 62 3 4 22 1 0 5 3 0 59 0 1 66 1 0 29 2 0 21 55 36 8 7 0 18 chain 13290 chr15 101991189 + 26951373 26951552 MER4B 649 + 400 574 64642 20 5 0 154 chain 92437 chr15 101991189 + 27198057 27199136 L1PA7 6471 + 5368 6451 19280 253 0 3 512 0 1 168 3 4 12 1 0 130 chain 17732 chr15 101991189 + 27292234 27292438 L1PA7 6471 + 6265 6469 58971 204 chain 32548 chr15 101991189 + 27447619 27448002 L1PA7 6471 + 6078 6461 39913 383 chain 9045 chr15 101991189 + 27532299 27532428 LTR9B 643 + 445 561 72460 59 8 0 16 5 0 41 chain 24394 chr15 101991189 + 27544821 27545098 L1PA5 6144 + 5866 6144 50179 135 0 1 142 chain 293067 chr15 101991189 + 27639920 27643763 L1PA10 4194 + 244 4104 7039 6 1 0 21 2 0 15 1 0 8 58 32 9 2 0 19 1 0 9 1 0 7 1 0 9 1 0 13 20 11 72 7 9 632 6 31 121 0 1 106 0 7 82 0 1 185 0 2 183 0 3 222 0 2 131 0 2 26 0 4 278 0 1 152 1 0 93 0 1 321 0 10 222 0 9 20 0 1 28 3 0 35 4 0 123 5 6 361 1 0 196 1 0 22 chain 8977 chr15 101991189 + 27663253 27663412 L1MA8 2339 + 1661 1822 72611 49 34 35 43 0 1 33 chain 22900 chr15 101991189 + 27694016 27694587 MSTA 426 + 20 413 52513 70 9 10 91 209 51 8 22 0 80 6 7 76 chain 29877 chr15 101991189 + 27694694 27695193 LTR10D 510 + 0 510 42154 77 0 3 14 1 9 43 0 1 47 83 84 137 13 11 84 chain 8465 chr15 101991189 + 27709582 27709679 THE1D 372 + 274 372 73764 37 0 1 60 chain 23606 chr15 101991189 + 27713866 27714501 LTR12_ 688 + 2 556 51420 31 0 2 203 0 3 6 115 116 12 6 10 18 9 10 11 33 36 17 134 39 40 chain 38539 chr15 101991189 + 27767374 27767884 LTR12 884 + 0 533 35680 26 1 0 30 10 10 53 0 25 196 1 2 36 2 0 155 chain 94938 chr15 101991189 + 27852199 27853578 L1PA3long 6157 + 4780 6152 18918 228 8 0 142 0 1 1001 chain 26746 chr15 101991189 + 27886891 27887258 THE1B 368 + 0 368 46620 12 3 1 25 1 6 64 5 4 9 0 1 78 3 1 167 chain 6289 chr15 101991189 + 27887594 27887691 THE1B 368 + 280 368 80037 26 10 1 61 chain 78141 chr15 101991189 + 27893103 27894189 MER11A 1151 + 0 1146 22062 55 0 99 22 8 0 54 1 0 64 4 0 149 0 1 94 0 1 145 0 1 150 25 1 11 8 15 21 18 0 37 0 1 60 6 7 78 5 9 71 chain 43620 chr15 101991189 + 27895280 27896895 THE1B-int 1605 + 0 629 32372 111 26 29 234 1014 0 58 7 32 165 chain 3880 chr15 101991189 + 27946205 27946247 MER39B 650 + 3 45 92292 42 chain 89285 chr15 101991189 + 27960926 27961947 L1PA7 6471 + 5434 6459 19806 180 0 3 519 0 1 322 chain 18172 chr15 101991189 + 27994077 27994397 MER1B 344 + 0 339 58491 16 27 42 23 19 21 114 4 0 42 17 23 58 chain 91493 chr15 101991189 + 27998210 27999198 L1PA3long 6157 + 5158 6146 19421 988 chain 50225 chr15 101991189 + 28008162 28008756 LTR10C 591 + 0 591 29473 37 0 1 221 4 0 332 chain 2547 chr15 101991189 + 28012559 28012602 LTR10C 591 + 111 151 103393 27 4 1 12 chain 158292 chr15 101991189 + 28069442 28071182 SVA_F 1814 + 12 1814 11856 876 1 113 90 50 0 723 chain 2177 chr15 101991189 + 28070409 28070459 SVA_F 1814 + 964 1013 70391 47 2 1 1 chain 27234 chr15 101991189 + 28082044 28082484 LTR12_ 688 + 0 554 45921 25 1 0 107 6 7 99 1 0 10 51 63 40 0 103 100 chain 4726 chr15 101991189 + 28186087 28186150 L1MB3 1562 + 1486 1549 87097 38 1 0 20 0 1 4 chain 3517 chr15 101991189 + 28295784 28295949 MER58B 340 + 159 323 95125 4 0 1 19 82 82 12 16 14 32 chain 71833 chr15 101991189 + 28305317 28306097 L1PA2 6032 + 4657 5438 23583 605 0 1 175 chain 60330 chr15 101991189 + 28477442 28478176 L1PA7 6471 + 5726 6459 26285 414 2 0 167 0 1 151 chain 46659 chr15 101991189 + 28606224 28606932 L1MA3 4352 + 1504 2208 30789 24 1 0 47 10 7 28 17 16 25 1 0 120 2 1 10 1 2 5 0 3 99 1 0 89 2 1 77 5 6 144 chain 91643 chr15 101991189 + 28689607 28690672 MER11C 1089 + 0 1073 19385 225 0 5 356 12 13 394 0 2 78 chain 31679 chr15 101991189 + 29119271 29119609 L1HS 6032 + 5691 6029 40598 338 chain 406651 chr15 101991189 + 29162889 29168319 L1PB1 5432 + 31 5424 5063 17 12 11 342 3 0 5 1 2 200 14 10 81 0 4 519 0 1 172 1 0 6 3 0 2 11 0 193 0 6 38 11 16 466 0 7 176 11 10 106 0 1 73 9 0 235 0 1 111 3 0 12 21 32 44 1 0 518 0 1 284 0 3 343 6 7 74 0 1 467 3 0 23 0 3 383 10 5 53 8 7 12 1 0 20 1 0 12 17 12 9 2 0 53 2 1 10 7 6 44 45 28 18 3 1 4 1 0 14 10 8 16 1 0 21 1 0 13 1 0 16 1 0 4 chain 84777 chr15 101991189 + 29213720 29214698 L1PA5 6144 + 5160 6144 20665 137 8 12 9 2 3 541 0 1 281 chain 28760 chr15 101991189 + 29215184 29215541 MLT2A1 477 + 0 354 43695 165 18 15 174 chain 62743 chr15 101991189 + 29218339 29219117 L1PB1 5432 + 3840 4626 25701 619 11 19 148 chain 29123 chr15 101991189 + 29219123 29219513 L1PB1 5432 + 4626 5009 43156 110 0 1 5 2 1 72 8 0 112 0 1 81 chain 6117 chr15 101991189 + 29219513 29219591 L1PB1 5432 + 5010 5088 80669 78 chain 10237 chr15 101991189 + 29219665 29219827 L1PB1 5432 + 5114 5266 69929 24 1 0 9 1 0 9 6 2 9 2 0 53 2 1 16 1 0 29 chain 3512 chr15 101991189 + 29219922 29219965 L1PB1 5432 + 5344 5386 95153 26 1 0 16 chain 13291 chr15 101991189 + 29251681 29251853 MER30 238 + 49 228 64640 58 5 12 109 chain 34617 chr15 101991189 + 29271386 29271864 LTR2B 499 + 9 499 38273 4 0 1 60 3 0 31 0 19 117 18 13 54 0 1 8 2 1 181 chain 40547 chr15 101991189 + 29273538 29274065 MLT2A2 560 + 16 560 34272 17 0 5 145 1 0 219 0 11 71 7 9 67 chain 3399 chr15 101991189 + 29318275 29318313 Tigger1 2417 + 2210 2248 96082 38 chain 160623 chr15 101991189 + 29387320 29389112 L1PA5 6144 + 4333 6132 11710 566 0 1 449 0 3 180 0 1 151 0 2 446 chain 348932 chr15 101991189 + 29413764 29417653 L1PA4 6152 + 2252 6151 5919 913 0 1 296 4 1 197 0 1 229 0 2 462 0 4 998 0 3 563 0 2 227 chain 476749 chr15 101991189 + 29505148 29511189 L1PA7 6471 + 693 6459 3704 521 3 0 341 0 1 215 1 5 445 3 4 108 0 1 63 0 1 87 1 0 96 0 1 517 5 9 188 0 2 38 1 0 212 1 5 526 0 1 103 2 0 53 1 0 154 0 1 564 2 1 78 1 0 219 0 1 348 0 4 483 0 3 2 294 0 216 1 0 115 0 1 33 chain 22796 chr15 101991189 + 29510542 29510824 AluY 311 + 18 297 52669 13 0 1 93 1 0 112 4 1 59 chain 18995 chr15 101991189 + 29658057 29658419 THE1C 375 + 0 355 57557 87 0 1 17 8 9 62 0 2 8 68 63 26 19 13 67 chain 42291 chr15 101991189 + 29663375 29663871 L1PA5 6144 + 5646 6142 33197 338 7 7 151 chain 34731 chr15 101991189 + 29686408 29686947 LTR12F 595 + 0 570 38201 98 0 41 38 17 8 21 0 9 172 17 3 19 35 37 101 0 2 21 chain 12576 chr15 101991189 + 29755107 29755306 Tigger3a 397 + 161 377 65838 4 1 0 12 18 20 136 4 20 24 chain 90093 chr15 101991189 + 29816793 29818008 L1PA8 5853 + 4678 5846 19666 214 0 3 33 2 1 74 11 12 55 27 1 415 2 0 80 1 0 42 2 0 71 8 0 8 4 0 4 5 0 15 0 1 10 1 0 23 2 1 19 1 0 86 chain 13146 chr15 101991189 + 29876164 29876656 MER30 238 + 31 238 64858 73 317 29 57 0 3 45 chain 119038 chr15 101991189 + 29896506 29898066 THE1B-int 1605 + 17 1598 15688 57 1 0 97 2 1 258 1 26 106 5 6 75 3 0 7 5 0 102 6 15 195 6 2 171 25 24 383 3 4 52 chain 5346 chr15 101991189 + 29964562 29964642 MLT1C 463 + 343 425 83972 42 5 7 33 chain 181977 chr15 101991189 + 30019724 30022011 L1PA8 5853 + 707 3002 10497 379 0 1 30 0 1 82 26 22 50 0 12 56 8 9 225 11 6 164 0 1 6 0 1 265 2 1 373 0 1 458 9 10 137 1 0 5 chain 25042 chr15 101991189 + 30052563 30052893 L1P4 1494 + 420 754 49207 40 1 0 82 7 12 200 chain 5196 chr15 101991189 + 30063369 30063440 MLT2C2 476 + 38 108 84697 57 1 0 13 chain 104381 chr15 101991189 + 30066746 30067884 L1PA3long 6157 + 4413 5551 17772 1138 chain 64999 chr15 101991189 + 30098936 30099646 L1PA3long 6157 + 5446 6157 25190 671 0 1 39 chain 10465 chr15 101991189 + 30105580 30105727 MER1A 529 + 339 487 69483 120 11 12 16 chain 5949 chr15 101991189 + 30112199 30112295 U8 134 + 0 98 81281 44 13 15 39 chain 63387 chr15 101991189 + 30158646 30159349 L1PA4 6152 + 4001 4704 25548 703 chain 24617 chr15 101991189 + 30209135 30209429 AluSg7 307 + 10 303 49844 67 1 0 226 chain 136429 chr15 101991189 + 30265039 30267619 L1PBa 3878 + 29 1928 13399 9 3 0 4 0 1 5 3 0 12 29 21 4 1 0 5 2 0 10 1 0 45 78 26 42 1 0 7 11 0 17 2 0 78 0 1 57 1 2 25 21 35 89 1 0 171 0 1 21 0 1 223 0 1 4 1 0 668 3 0 111 612 0 203 chain 11104 chr15 101991189 + 30385330 30385556 MER30 238 + 0 238 68402 16 42 42 36 6 5 8 4 0 9 5 16 20 0 6 80 chain 57662 chr15 101991189 + 30449597 30450374 MER4E1 777 + 0 777 27064 24 0 1 40 2 1 105 4 3 19 1 0 48 1 0 7 4 5 73 5 6 19 0 1 194 2 0 221 0 2 8 chain 9548 chr15 101991189 + 30500242 30500362 MER30 238 + 119 235 71372 7 4 0 109 chain 45171 chr15 101991189 + 30500498 30501108 PRIMA4_LTR 623 + 0 623 31484 91 0 1 96 4 0 29 13 21 8 0 1 67 0 2 16 1 0 10 1 2 44 1 2 24 0 4 205 chain 64231 chr15 101991189 + 30567932 30568641 L1PA3long 6157 + 5446 6157 25364 38 0 1 632 0 1 39 chain 9960 chr15 101991189 + 30574559 30574706 MER1A 529 + 339 487 70507 114 17 18 16 chain 6080 chr15 101991189 + 30581185 30581281 U8 134 + 0 98 80798 44 13 15 39 chain 4447 chr15 101991189 + 30619104 30619165 Tigger3b 1229 + 476 536 88626 4 1 0 56 chain 5058 chr15 101991189 + 30673759 30673841 HY3 101 + 10 100 85364 18 8 12 21 0 4 35 chain 60529 chr15 101991189 + 30687738 30688444 L1PA7 6471 + 5758 6464 26227 549 16 16 141 chain 386937 chr15 101991189 + 30736711 30741996 L1PB1 5432 + 65 5424 5373 7 9 0 329 1 0 108 2 0 361 1 0 16 1 0 307 53 62 90 8 9 41 1 0 7 16 1 319 1 0 197 0 3 179 0 1 188 0 1 54 5 7 140 1 0 31 0 1 94 1 2 19 18 0 234 0 38 264 21 112 78 1 2 15 0 1 99 0 4 506 1 0 617 8 15 15 0 1 164 15 11 231 0 1 5 1 0 20 0 1 20 23 21 24 1 0 9 16 11 11 3 1 50 2 1 16 1 0 44 1 0 15 3 0 8 16 7 16 10 7 12 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 526074 chr15 101991189 + 30775180 30781390 L1PA4 6152 + 10 6136 1994 111 7 21 473 0 4 117 1 0 223 106 0 1056 0 1 197 0 3 453 1 0 28 0 3 426 3 0 1199 1 0 434 7 10 529 0 4 17 1 2 222 9 4 589 chain 4676 chr15 101991189 + 30814307 30814617 L1ME3A 1206 + 654 937 87403 22 238 211 50 chain 10397 chr15 101991189 + 30847898 30848072 L1MA3 4352 + 4171 4352 69627 32 1 4 24 3 0 27 2 0 24 1 0 6 1 0 27 4 15 22 chain 131108 chr15 101991189 + 30883573 30885113 LTR12C 1709 + 0 1709 13915 309 0 1 4 1 0 440 0 163 193 10 7 13 0 4 85 0 1 4 0 4 481 chain 24531 chr15 101991189 + 30944281 30944584 AluSx4 309 + 0 299 49977 10 3 0 40 1 0 249 chain 25441 chr15 101991189 + 30997814 30998105 AluYd8 298 + 0 286 48567 89 5 0 197 chain 8539 chr15 101991189 + 31052351 31052458 L1MB3 1562 + 350 456 73595 80 1 0 26 chain 4990 chr15 101991189 + 31150364 31150424 MER61E 571 + 4 64 85705 60 chain 40109 chr15 101991189 + 31152460 31153333 MER4D1 891 + 8 589 34586 18 1 0 86 8 6 75 314 23 50 0 2 148 1 0 13 1 0 112 0 1 4 1 2 41 chain 10852 chr15 101991189 + 31155735 31155889 MER4E1 777 + 0 153 68773 17 2 0 34 1 2 100 chain 127651 chr15 101991189 + 31183939 31185427 SVA_B 1603 + 0 1603 14335 21 35 28 204 0 1 575 4 45 34 0 82 606 2 0 7 chain 29314 chr15 101991189 + 31198873 31199294 LTR7B 505 + 0 495 42855 102 2 13 41 1 2 17 0 38 12 3 27 26 0 2 85 1 0 76 14 13 41 chain 15376 chr15 101991189 + 31220078 31220317 MER1B 344 + 103 344 61820 96 19 18 50 15 18 59 chain 42095 chr15 101991189 + 31224548 31225093 MER41A 554 + 0 554 33293 42 4 5 150 19 27 330 chain 3898 chr15 101991189 + 31470699 31470775 MER20 218 + 30 109 92144 5 0 1 30 19 21 22 chain 26242 chr15 101991189 + 31535123 31535487 THE1D 372 + 0 371 47358 6 1 0 160 0 4 8 12 16 146 1 0 19 0 1 11 chain 46091 chr15 101991189 + 31576015 31576648 MER4A 717 + 0 634 31019 49 1 21 58 2 1 59 16 1 54 1 2 19 4 0 370 chain 530840 chr15 101991189 + 31598240 31604609 L1PA7 6471 + 35 6466 1797 61 4 5 142 0 1 8 6 4 146 1 0 10 1 0 333 4 6 26 6 5 470 15 34 709 15 0 127 6 53 444 0 1 20 0 1 625 0 2 228 3 1 47 0 4 111 0 3 754 0 1 251 0 12 466 2 1 1268 1 0 3 8 0 48 chain 305441 chr15 101991189 + 31609803 31614267 L1PB1 5432 + 33 5401 6710 177 17 34 56 0 3 38 0 1 21 27 1286 65 12 9 27 1 4 163 1 0 172 348 0 408 7 0 200 0 2 50 0 2 91 1 0 40 0 7 49 1 0 4 1 2 75 21 20 215 0 1 8 0 1 33 0 1 70 0 1 242 0 2 120 0 3 860 7 5 27 3 0 226 0 2 68 0 6 173 1 0 13 11 0 24 1 0 7 1 0 10 6 2 8 2 0 53 2 1 16 1 0 44 1 0 7 31 21 18 3 1 4 1 0 7 2 1 6 2 0 26 1 0 19 1 0 10 chain 4890 chr15 101991189 + 31640128 31640192 L1PB1 5432 + 5158 5220 86201 11 3 1 50 chain 10800 chr15 101991189 + 31640210 31640391 L1PB1 5432 + 5236 5420 68862 44 1 0 16 1 13 18 7 4 15 2 0 24 1 0 21 1 0 13 1 0 16 chain 16543 chr15 101991189 + 31679401 31679745 THE1D 372 + 2 328 60316 13 1 3 14 1 0 42 4 5 65 100 80 104 chain 29432 chr15 101991189 + 31734100 31734540 L1PA13 3608 + 3067 3497 42694 54 8 7 32 1 0 113 8 6 57 1 0 55 1 0 5 2 0 47 2 0 5 2 0 20 1 0 15 0 3 11 chain 118116 chr15 101991189 + 31849134 31850561 L1PA5 6144 + 4714 6135 15868 524 2 1 5 0 1 46 6 9 219 10 0 146 0 1 27 5 5 437 chain 41356 chr15 101991189 + 31899073 31899545 L1PA7 6471 + 5987 6459 33758 472 chain 4205 chr15 101991189 + 31923638 31923701 LTR12_ 688 + 459 520 90089 31 6 4 26 chain 7646 chr15 101991189 + 31937723 31937815 ERVL-int 1947 + 690 782 75758 92 chain 24219 chr15 101991189 + 31999589 31999931 L1PA8 5853 + 5517 5853 50464 47 1 0 43 3 1 71 2 0 9 1 0 6 0 1 45 2 1 4 0 1 14 1 0 8 0 1 78 1 0 6 chain 41041 chr15 101991189 + 32016433 32016982 MLT2A2 560 + 0 560 33940 122 11 7 64 2 5 201 3 14 34 0 1 112 chain 104645 chr15 101991189 + 32078525 32079865 L1PA10 4194 + 2818 4150 17734 125 0 1 12 10 0 827 10 17 218 3 6 52 5 0 37 9 6 24 1 0 7 chain 5058 chr15 101991189 + 32147180 32147253 L1PA16 3655 + 3522 3592 85371 56 3 0 14 chain 554050 chr15 101991189 + 32183429 32189560 L1PA3long 6157 + 4 6146 479 522 4 0 312 0 1 138 0 1 211 0 3 613 1 3 1462 0 3 2031 0 4 42 1 2 657 1 0 108 0 1 28 chain 99299 chr15 101991189 + 32202036 32203157 L1PA4 6152 + 4966 6084 18374 341 4 0 188 0 1 588 chain 19763 chr15 101991189 + 32217915 32218250 Tigger3d 321 + 20 290 56720 164 0 1 16 15 0 9 29 0 6 22 0 74 chain 5909 chr15 101991189 + 32248956 32249028 MLT1C 463 + 117 189 81450 6 0 1 27 1 0 38 chain 9964 chr15 101991189 + 32284151 32284258 U6 107 + 0 107 70500 107 chain 40057 chr15 101991189 + 32284258 32284696 L1PA3long 6157 + 5715 6153 34616 438 chain 545004 chr15 101991189 + 32292275 32298302 L1PA3long 6157 + 4 6152 1030 148 0 1 210 6 3 160 4 0 250 0 128 2564 0 1 523 3 1 2159 chain 53065 chr15 101991189 + 32300535 32301412 L1PB 1623 + 730 1575 28547 5 1 0 93 9 58 7 41 0 403 0 1 12 8 1 44 0 1 4 1 0 87 1 0 7 3 2 29 1 0 4 3 0 8 10 7 12 1 0 9 52 29 22 chain 23774 chr15 101991189 + 32307038 32307372 L1PA8 5853 + 5526 5853 51158 38 1 0 44 2 0 70 16 14 44 8 7 17 2 1 92 chain 92556 chr15 101991189 + 32379678 32380715 L1PA4 6152 + 4700 5738 19263 693 0 1 344 chain 26740 chr15 101991189 + 32415503 32415784 AluYa5 310 + 21 302 46627 281 chain 37423 chr15 101991189 + 32418449 32418942 LOR1a 498 + 0 491 36462 37 11 12 106 1 0 55 1 0 273 1 0 8 chain 10796 chr15 101991189 + 32426659 32426884 MER30 238 + 0 238 68870 16 42 42 36 6 5 8 4 0 8 5 17 20 0 6 80 chain 14331 chr15 101991189 + 32477860 32478068 MER30 238 + 0 238 63147 15 0 18 74 4 20 45 1 0 26 3 0 40 chain 36009 chr15 101991189 + 32505715 32506192 LTR2B 499 + 13 499 37407 58 9 0 33 0 19 267 4 3 106 chain 36797 chr15 101991189 + 32551556 32552041 MER1A 529 + 46 529 36887 410 20 18 55 chain 4336 chr15 101991189 + 32608493 32608554 Tigger3b 1229 + 476 536 89263 4 1 0 56 chain 23884 chr15 101991189 + 32618665 32618958 AluY 311 + 12 290 50971 97 16 0 89 0 1 91 chain 26827 chr15 101991189 + 32688676 32688978 AluYk4 311 + 0 301 46505 132 1 0 169 chain 15649 chr15 101991189 + 32703700 32703917 MER1B 344 + 105 329 61470 157 18 25 42 chain 93288 chr15 101991189 + 32726153 32727331 L1P3 4156 + 2956 4139 19146 80 0 1 43 12 17 422 10 1 17 4 8 46 7 0 478 0 14 17 18 15 24 chain 11368 chr15 101991189 + 32753971 32754138 MSTB1 431 + 31 204 67974 4 1 0 25 2 4 72 4 9 59 chain 55081 chr15 101991189 + 32846233 32846903 L1PA8A 6298 + 5332 6024 27844 140 0 4 8 0 7 48 0 5 26 0 2 89 0 3 165 0 1 194 chain 11552 chr15 101991189 + 32868232 32868510 Tigger3c 601 + 364 543 67655 53 120 21 105 chain 110365 chr15 101991189 + 32962271 32963502 L1PA3long 6157 + 4925 6156 17025 1083 3 1 140 0 2 5 chain 203380 chr15 101991189 + 33002902 33005196 L1PA4 6152 + 3826 6148 9594 184 0 14 151 0 1 175 0 4 173 0 3 592 0 1 180 0 4 169 0 2 419 1 0 250 chain 3779 chr15 101991189 + 33043805 33044764 MER52A 1651 + 161 840 93004 28 0 23 14 789 554 31 79 11 18 chain 8948 chr15 101991189 + 33048983 33049125 MER41-int 2638 + 438 580 72673 12 17 15 87 0 2 26 chain 26793 chr15 101991189 + 33087601 33088197 L1PB1 5432 + 4918 5422 46549 107 1 3 53 2 0 13 86 20 11 0 3 7 1 0 11 32 25 49 2 1 15 1 0 44 1 0 16 15 0 7 4 8 7 0 1 7 3 1 5 1 0 14 4 2 22 2 1 21 1 0 12 1 0 18 chain 89291 chr15 101991189 + 33220194 33221194 L1PA5 6144 + 4965 5968 19803 894 0 3 106 chain 169864 chr15 101991189 + 33350180 33352102 L1P1 4361 + 2401 4325 11113 777 0 1 425 0 1 545 1 0 27 1 3 124 2 1 20 chain 5581 chr15 101991189 + 33357634 33357697 MER41B 635 + 483 547 82894 28 0 1 35 chain 37422 chr15 101991189 + 33523024 33523550 LTR12_ 688 + 0 688 36465 60 2 43 35 24 8 296 10 13 13 0 133 18 0 1 68 chain 191962 chr15 101991189 + 33574801 33577330 L1PA10 4194 + 1604 4146 10025 122 3 4 285 0 4 36 7 6 165 1 7 36 0 6 349 15 16 14 6 3 19 3 7 22 0 4 253 0 1 17 1 0 21 9 0 123 1 2 55 0 1 210 2 1 7 0 3 108 1 0 397 35 34 14 0 1 159 3 0 30 chain 8528 chr15 101991189 + 33596883 33597027 LTR8 732 + 81 227 73626 59 12 12 13 6 8 54 chain 470546 chr15 101991189 + 33683514 33689374 L1PA6 6164 + 0 6162 3839 567 1 0 177 1 0 43 0 17 230 0 546 278 1 6 20 0 1 442 1 2 253 0 4 585 1 0 28 0 4 28 0 13 20 0 4 48 3 0 136 0 1 348 0 5 125 0 1 116 0 4 318 0 4 365 0 1 575 0 3 16 2 1 36 313 0 509 0 3 132 2 3 131 0 4 9 chain 522937 chr15 101991189 + 33757851 33764588 L1PA7 6471 + 6 6470 2137 183 0 1 223 0 1 284 21 19 81 10 12 538 0 2 15 2 1 388 0 2 147 0 1 4 1 0 83 2 6 140 0 1 26 0 4 256 0 3 93 0 4 13 0 26 77 0 1 248 0 4 129 0 1 274 1 0 103 3 0 149 0 4 145 1 0 31 3 0 271 9 5 306 0 3 356 1 0 43 10 1 235 1 0 662 0 3 25 8 7 63 0 1 89 312 0 25 2 0 177 11 13 444 1 0 12 chain 45103 chr15 101991189 + 33879068 33879564 L1PA3long 6157 + 5663 6157 31526 489 2 0 5 chain 3795 chr15 101991189 + 33900927 33900970 LTR62 707 + 2 45 92882 43 chain 48127 chr15 101991189 + 33916484 33917948 L1PB1 5432 + 4615 5422 30249 15 4 0 164 0 8 15 7 1 66 383 0 100 10 13 18 0 2 26 1 2 58 285 11 24 1 0 6 1 0 14 5 1 9 2 0 52 2 1 16 1 0 31 29 41 6 0 2 9 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 2644 chr15 101991189 + 33951392 33951423 L1PA6 6164 + 5984 6015 102755 31 chain 12588 chr15 101991189 + 33951428 33951569 L1PA6 6164 + 6021 6162 65815 141 chain 161342 chr15 101991189 + 33952940 33954805 L1PA6 6164 + 4303 6157 11658 62 0 3 129 0 1 143 4 2 654 12 0 730 1 0 130 chain 103497 chr15 101991189 + 33995744 33997047 L1P2 5180 + 32 1331 17880 31 2 3 84 1 0 44 1 0 53 1 0 62 13 15 129 9 8 54 1 0 272 1 0 6 1 0 538 chain 341273 chr15 101991189 + 34049034 34054248 L1PA11 4918 + 8 4567 6042 34 2 0 37 3 0 31 7 6 12 3 2 51 1 0 31 2 0 6 2 1 181 0 1 67 1 0 18 2 22 16 0 3 325 0 1 11 310 0 152 10 1 19 0 1 364 1 2 325 10 11 73 1 2 155 0 4 7 0 1 214 2 1 17 0 1 31 4 6 182 0 1 114 10 0 44 0 3 118 1 0 198 2 1 38 0 1 15 0 1 351 0 2 346 8 7 18 333 1 66 0 1 4 1 0 390 0 1 167 5 4 34 4 0 36 1 0 11 1 0 68 2 0 14 1 0 10 31 22 10 13 9 15 1 0 13 chain 20358 chr15 101991189 + 34102323 34102652 MER75 514 + 41 341 55939 29 33 0 18 26 29 103 0 1 120 chain 13939 chr15 101991189 + 34104297 34105081 MER75B 242 + 50 242 63689 11 0 2 44 592 0 109 1 0 11 1 0 15 chain 512908 chr15 101991189 + 34165962 34172084 L1PA6 6164 + 0 6158 2626 13 5 1 445 8 6 53 3 4 265 0 17 719 0 1 33 4 5 213 0 8 482 2 0 10 0 2 84 0 1 555 0 1 265 8 8 421 0 1 178 1 2 575 0 2 517 0 3 1113 7 0 12 0 8 12 0 3 115 0 1 4 chain 3049 chr15 101991189 + 34187114 34187208 MER52C 1267 + 866 914 99318 31 46 0 17 chain 20951 chr15 101991189 + 34203766 34204033 L1PA7 6471 + 6196 6470 55190 221 2 3 31 1 7 12 chain 4069 chr15 101991189 + 34226846 34226895 MADE1 96 + 45 94 90950 49 chain 3648 chr15 101991189 + 34276639 34276685 Charlie4a 502 + 53 98 94039 14 1 0 31 chain 31671 chr15 101991189 + 34280569 34281106 L1MA5A 2387 + 1792 2269 40607 53 1 0 69 9 0 27 2 3 89 1 0 27 1 0 48 1 0 47 2 0 20 11 6 34 3 0 13 42 4 37 chain 7298 chr15 101991189 + 34315577 34315693 Tigger1 2417 + 2225 2334 76677 31 3 0 46 10 6 26 chain 7377 chr15 101991189 + 34371915 34372009 MLT1A0 366 + 230 326 76454 83 0 2 11 chain 28771 chr15 101991189 + 34376060 34376474 LTR7B 505 + 0 488 43671 108 0 10 66 6 13 18 0 26 8 3 1 17 0 33 22 0 1 42 1 0 23 0 1 52 14 13 34 chain 28435 chr15 101991189 + 34463511 34463941 MLT2A1 477 + 13 477 44216 33 17 16 11 0 1 39 2 1 28 0 1 26 0 4 15 11 12 185 3 33 40 1 0 19 chain 258010 chr15 101991189 + 34484761 34488226 L1PA5 6144 + 3237 6139 8024 1961 20 0 43 0 1 488 0 1 30 545 0 378 chain 6027 chr15 101991189 + 34566137 34566275 L1MB3 1562 + 1385 1505 80979 9 0 2 23 41 21 12 1 2 12 1 0 39 chain 56387 chr15 101991189 + 34586145 34586800 L1PA5 6144 + 5448 6097 27456 349 7 0 204 0 1 95 chain 3808 chr15 101991189 + 34586858 34586901 L1PA5 6144 + 6098 6141 92782 43 chain 14429 chr15 101991189 + 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48 0 17 7 1 0 93 chain 25105 chr15 101991189 + 37183710 37184023 MER41A 554 + 157 469 49108 6 1 0 306 chain 51755 chr15 101991189 + 37186961 37187597 L1PA8 5853 + 5225 5853 28951 339 1 0 46 2 0 69 1 0 9 1 0 12 1 0 40 2 1 19 1 0 93 chain 218224 chr15 101991189 + 37213094 37215732 L1PA7 6471 + 3822 6470 9085 7 7 0 387 0 1 51 0 1 127 0 5 238 1 0 316 0 1 392 1 0 4 1 2 176 0 3 81 0 3 83 0 2 322 0 1 128 0 1 121 0 2 24 8 9 83 0 2 6 15 13 48 3 0 8 chain 3785 chr15 101991189 + 37226640 37226686 L1PA7 6471 + 6173 6218 92953 41 1 0 4 chain 20717 chr15 101991189 + 37226686 37226935 L1PA7 6471 + 6219 6469 55476 94 0 1 155 chain 51953 chr15 101991189 + 37242330 37243903 L1PB1 5432 + 4591 5420 28883 25 5 8 160 13 22 196 1 0 12 0 2 87 730 2 9 1 0 24 1 0 9 17 12 8 2 0 53 3 2 14 1 0 41 34 20 30 3 1 4 1 0 14 2 0 24 1 0 21 1 4 9 1 0 16 chain 18167 chr15 101991189 + 37276661 37277073 L1PA11 4918 + 4249 4629 58496 13 0 4 62 2 0 67 1 0 12 7 5 58 14 12 6 1 0 15 47 36 15 1 0 13 2 0 11 12 5 11 1 0 4 20 14 17 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233 0 2 323 4 0 7 chain 543014 chr15 101991189 + 37427158 37433172 L1PA3long 6157 + 0 6151 1135 151 1 2 322 0 7 294 0 128 636 0 1 778 1 0 1739 0 1 2092 chain 3098 chr15 101991189 + 37441975 37442009 L1PA8 5853 + 5701 5735 98800 34 chain 19503 chr15 101991189 + 37451721 37452025 THE1C 375 + 7 321 57021 33 0 5 35 15 14 20 0 1 25 9 13 20 8 9 139 chain 221237 chr15 101991189 + 37472553 37474992 L1PA3long 6157 + 1523 3963 9001 1966 0 1 473 chain 199290 chr15 101991189 + 37474992 37477173 L1PA3long 6157 + 3965 6149 9738 328 0 2 887 0 1 966 chain 217051 chr15 101991189 + 37502333 37505500 L1PA10 4194 + 175 3282 9119 13 3 0 11 3 0 8 2 0 9 49 41 14 2 0 16 1 0 7 52 41 21 24 24 13 39 28 4 1 0 20 1 0 4 0 1 32 22 9 198 18 15 322 0 1 264 4 0 177 3 4 325 1 2 26 6 3 393 0 1 55 0 2 241 7 1 85 5 6 16 0 2 42 21 23 34 0 1 226 0 1 173 2 0 152 chain 23613 chr15 101991189 + 37515426 37515684 L1PA3long 6157 + 5088 5346 51409 258 chain 396463 chr15 101991189 + 37531661 37536172 L1PA4 6152 + 1634 6152 5207 685 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101991189 + 37923859 37924873 L1PA7 6471 + 5448 6468 21293 85 1 2 12 0 1 73 1 0 78 1 3 192 0 2 534 4 3 23 0 2 10 chain 318831 chr15 101991189 + 37955428 37959276 L1PA7 6471 + 2642 6470 6426 42 4 2 898 0 3 24 0 1 45 0 1 177 0 1 837 0 2 53 1 0 442 0 1 434 0 1 13 17 14 67 0 2 68 31 2 487 0 1 17 0 2 191 chain 108008 chr15 101991189 + 37964597 37966104 L1MA2 4263 + 2595 4097 17325 55 14 16 491 5 6 210 0 5 189 8 7 10 8 5 149 0 1 9 0 3 55 3 0 129 32 30 93 7 0 16 1 0 23 chain 97244 chr15 101991189 + 38026073 38027646 THE1A-int 1579 + 0 1574 18627 129 319 0 12 0 318 34 5 6 145 6 8 4 0 1 876 1 0 29 2 1 11 chain 9189 chr15 101991189 + 38067225 38067346 MER85 139 + 8 139 72141 82 1 11 38 chain 352067 chr15 101991189 + 38096415 38101583 L1PA8 5853 + 1173 5853 5893 311 13 14 49 134 0 443 10 8 25 7 0 345 14 6 22 8 7 123 25 5 347 357 13 117 0 3 183 0 4 122 0 2 219 0 1 30 0 1 351 0 3 65 0 2 312 6 15 158 0 5 122 0 1 192 7 8 24 0 1 101 1 0 73 4 7 31 34 40 160 1 0 4 0 1 117 9 0 25 1 3 170 1 0 46 2 0 65 11 10 5 1 0 44 8 7 19 2 1 92 chain 532101 chr15 101991189 + 38119424 38126168 L1PA7 6471 + 0 6468 1743 411 0 1 520 5 6 160 7 5 242 1 0 5 12 13 73 1 0 871 0 11 180 29 31 106 7 0 461 0 4 403 1 0 279 0 1 46 0 1 170 1 0 30 0 1 104 0 1 793 0 9 11 1 0 167 0 8 88 0 1 67 0 1 81 7 1 135 0 1 53 1 0 50 1 5 14 0 4 126 0 1 342 308 0 374 chain 29067 chr15 101991189 + 38157534 38157971 L1PA16 3655 + 3204 3618 43236 76 12 10 85 1 2 202 3 0 14 24 5 20 chain 5599 chr15 101991189 + 38273205 38273265 L1PA16 3655 + 2518 2578 82811 60 chain 14768 chr15 101991189 + 38336582 38336923 L1PB1 5432 + 5113 5422 62572 25 1 0 6 1 0 12 2 0 3 2 0 9 2 0 9 0 3 40 2 1 15 11 0 43 3 2 15 63 50 24 1 0 21 1 0 10 0 1 20 chain 11754 chr15 101991189 + 38425507 38425696 MLT1D 503 + 249 439 67304 63 1 2 27 1 0 15 24 25 58 chain 20593 chr15 101991189 + 38442755 38443101 THE1D 372 + 15 372 55651 145 79 91 89 1 0 32 chain 42398 chr15 101991189 + 38447344 38448022 L1PB2 3958 + 3164 3836 33130 36 1 7 50 0 1 49 2 0 56 10 11 65 2 0 12 4 0 30 0 1 63 26 25 31 17 16 50 1 0 12 1 0 74 2 0 14 20 19 50 chain 7003 chr15 101991189 + 38542257 38542340 HY3 101 + 15 99 77589 72 0 1 11 chain 528939 chr15 101991189 + 38580735 38586868 L1PA5 6144 + 0 6140 1883 121 0 14 1014 0 3 17 9 0 353 1 0 4 0 1 141 0 2 623 0 1 19 3 1 944 0 2 293 6 0 121 0 1 6 0 2 1845 6 5 607 chain 52923 chr15 101991189 + 38596430 38597021 L1PA4 6152 + 5549 6143 28602 142 0 2 345 0 1 104 chain 23467 chr15 101991189 + 38617108 38617398 AluSp 311 + 9 299 51639 185 0 1 86 2 1 17 chain 60298 chr15 101991189 + 38678406 38679248 MER4D1 891 + 47 878 26297 88 9 7 291 11 15 148 3 7 62 9 1 65 9 0 147 chain 3409 chr15 101991189 + 38725262 38725303 L1MB7 1623 + 1388 1429 95991 41 chain 28385 chr15 101991189 + 38749790 38750105 AluYb8 318 + 0 306 44296 132 2 0 122 7 0 52 chain 540390 chr15 101991189 + 38782749 38788759 L1PA3long 6157 + 1 6156 1317 280 0 1 4 2 1 489 0 128 1372 0 5 448 5 7 530 0 4 22 0 1 651 0 1 417 0 4 1790 chain 108851 chr15 101991189 + 38813500 38814781 L1PA6 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4194 + 1287 4082 9787 60 12 15 114 1 0 322 32 12 24 0 4 116 0 1 81 1 0 101 13 17 68 0 4 34 1 20 84 1 4 111 0 4 18 6 5 136 0 13 12 0 8 104 2 6 399 0 5 111 0 59 76 0 1 8 0 3 97 3 5 338 7 2 67 1 2 22 9 12 90 chain 50310 chr15 101991189 + 39011033 39011620 LTR14C 587 + 0 587 29448 587 chain 23222 chr15 101991189 + 39015521 39015810 HERVK22-int 3844 + 1554 1842 52049 269 1 0 19 chain 6106 chr15 101991189 + 39015810 39015881 U3 216 + 0 71 80704 71 chain 4346 chr15 101991189 + 39032364 39032539 L1MC4 1079 + 74 248 89201 27 110 109 38 chain 80764 chr15 101991189 + 39045420 39046742 L1PB1 5432 + 4163 5420 21479 34 13 15 15 0 1 68 1 2 315 9 5 11 0 1 84 1 0 119 11 15 204 2 1 50 109 67 50 2 1 16 1 0 44 1 0 15 1 0 5 53 36 9 2 0 16 9 0 7 0 8 14 1 0 13 1 0 16 chain 42442 chr15 101991189 + 39057297 39057906 L1PB2 3958 + 3241 3838 33100 66 14 12 39 0 3 16 8 4 58 2 0 13 2 0 6 2 0 87 1 0 51 3 4 17 1 0 31 0 1 33 1 0 30 1 2 39 2 0 22 1 0 63 chain 10799 chr15 101991189 + 39103348 39103495 THE1D 372 + 225 372 68864 116 0 2 5 3 1 23 chain 23093 chr15 101991189 + 39112495 39112857 THE1D 372 + 10 372 52220 5 3 0 33 28 16 104 0 4 6 11 22 135 1 0 15 0 1 21 chain 5326 chr15 101991189 + 39148869 39148970 L1MA9 1812 + 1567 1665 84067 10 4 3 36 8 6 43 chain 310654 chr15 101991189 + 39220971 39224412 L1PA3long 6157 + 2706 6155 6599 4 0 1 477 0 1 330 0 1 177 0 2 185 1 0 647 0 3 101 0 1 1519 chain 25242 chr15 101991189 + 39226457 39226830 THE1C 375 + 0 369 48883 43 0 1 33 35 34 14 3 0 225 1 0 19 chain 44662 chr15 101991189 + 39233438 39233962 L1PA7 6471 + 5944 6470 31761 116 0 1 187 0 1 221 chain 3709 chr15 101991189 + 39234225 39234271 MER67A 545 + 475 522 93554 6 0 1 40 chain 224159 chr15 101991189 + 39257318 39259808 L1PA3long 6157 + 3656 6144 8922 1256 1 0 210 1 0 1022 chain 179401 chr15 101991189 + 39261771 39263900 L1PA6 6164 + 3996 6146 10617 366 0 4 409 4 0 352 0 1 175 0 15 33 0 1 67 0 1 69 0 4 455 5 4 194 chain 51325 chr15 101991189 + 39267931 39268515 L1PA5 6144 + 5548 6132 29111 584 chain 55053 chr15 101991189 + 39282164 39282790 L1PA5 6144 + 4714 5340 27850 626 chain 21179 chr15 101991189 + 39288535 39289084 L1PB1 5432 + 5004 5420 54913 47 1 0 52 0 3 10 111 0 21 1 0 9 1 0 12 5 1 9 2 0 8 3 7 36 19 17 41 43 31 20 2 0 4 1 0 14 2 0 6 1 3 17 1 0 19 1 0 13 1 0 16 chain 52370 chr15 101991189 + 39312434 39313064 L1PA7 6471 + 5820 6463 28767 311 1 0 49 0 1 23 0 3 91 1 13 147 2 0 5 chain 42678 chr15 101991189 + 39386993 39387469 L1PA4 6152 + 5664 6140 32956 79 0 1 93 1 0 303 chain 554985 chr15 101991189 + 39420570 39426585 L1PA2 6032 + 7 6032 414 2190 0 1 941 0 5 2870 0 4 14 chain 206585 chr15 101991189 + 39521881 39524123 L1PA2 6032 + 3766 6012 9485 463 0 4 1779 chain 15510 chr15 101991189 + 39556910 39557096 MER107 203 + 0 196 61636 159 0 10 27 chain 15790 chr15 101991189 + 39563390 39563632 Tigger3a 397 + 35 327 61297 40 28 78 174 chain 3171 chr15 101991189 + 39646166 39646245 MER52C 1267 + 871 956 98197 27 24 31 12 1 0 15 chain 18711 chr15 101991189 + 39647971 39648179 L1PA2 6032 + 5822 6030 57887 208 chain 25110 chr15 101991189 + 39653582 39653911 THE1B 368 + 42 368 49099 134 1 0 17 2 0 100 1 0 59 0 1 15 chain 10487 chr15 101991189 + 39703602 39703743 L1PA8 5853 + 5713 5853 69437 27 2 1 19 1 0 51 0 1 41 chain 27870 chr15 101991189 + 39715651 39716075 MSTA 426 + 0 426 45079 26 0 1 105 11 12 17 9 5 40 2 0 30 2 0 64 15 23 103 chain 111108 chr15 101991189 + 39727724 39729286 L1PA15 4387 + 2609 4208 16926 80 2 1 74 0 1 229 0 1 4 1 0 168 8 6 249 1 0 7 0 1 88 0 25 21 0 1 4 2 1 110 0 5 45 4 7 76 2 0 14 23 34 29 2 0 23 2 1 19 5 4 103 5 9 51 6 5 22 5 4 54 1 0 23 chain 181730 chr15 101991189 + 39838519 39840643 L1PA5 6144 + 3818 6141 10510 505 2 200 268 0 8 600 8 5 731 4 0 6 chain 3052 chr15 101991189 + 39890162 39890200 MER63B 433 + 395 433 99280 38 chain 16819 chr15 101991189 + 39985435 39985628 L1PA7 6471 + 3651 3844 60011 193 chain 5098 chr15 101991189 + 40028412 40028474 MER20 218 + 22 84 85172 62 chain 3349 chr15 101991189 + 40085685 40085723 MLT1F2 592 + 489 527 96609 38 chain 11441 chr15 101991189 + 40137995 40138158 MLT1B 390 + 222 388 67848 59 6 0 6 0 9 92 chain 68182 chr15 101991189 + 40140214 40140985 L1PA4 6152 + 5374 6144 24414 622 1 0 148 chain 43678 chr15 101991189 + 40341424 40342195 Tigger3b 1229 + 0 770 32330 81 0 1 40 74 75 98 1 0 35 7 0 47 6 9 81 1 2 58 13 19 25 12 13 7 1 0 30 1 3 28 5 0 31 1 0 14 5 4 69 chain 22553 chr15 101991189 + 40447975 40448255 AluSc 308 + 8 293 53039 39 1 7 203 2 1 35 chain 4321 chr15 101991189 + 40529588 40529642 U6 107 + 18 76 89345 19 0 1 6 0 3 29 chain 68760 chr15 101991189 + 40559795 40561163 L1PB3 3668 + 2555 3614 24267 110 1 0 49 1 0 6 0 14 48 297 0 84 0 1 22 0 3 96 2 0 10 0 1 54 9 1 70 10 13 140 0 1 13 1 0 98 2 3 6 0 7 70 23 7 15 9 7 24 3 1 19 2 0 18 24 19 10 7 4 15 chain 2755 chr15 101991189 + 40566904 40566947 MER3 215 + 144 193 101931 23 1 7 19 chain 3481 chr15 101991189 + 40582966 40583055 MER51A 677 + 176 235 95377 14 36 6 39 chain 17501 chr15 101991189 + 40633838 40634074 Tigger3b 1229 + 293 531 59244 18 8 11 9 1 0 200 chain 158973 chr15 101991189 + 40682074 40684259 SVA_D 2077 + 12 2077 11811 165 0 4 377 0 40 125 0 3 35 3 0 146 0 136 292 401 98 622 0 3 19 chain 30812 chr15 101991189 + 40683217 40683611 SVA_F 1814 + 875 1284 39399 5 0 1 67 48 14 203 0 49 60 1 0 10 chain 4509 chr15 101991189 + 40683289 40683337 SVA_F 1814 + 1090 1138 57473 48 chain 18415 chr15 101991189 + 40689244 40689455 HERVK11-int 2540 + 1797 2007 58216 38 1 0 172 chain 6976 chr15 101991189 + 40700804 40700912 MER2 342 + 207 315 77681 35 3 0 5 1 4 64 chain 23453 chr15 101991189 + 40715085 40715378 AluSg7 307 + 10 300 51671 121 0 1 157 2 0 5 2 0 6 chain 4318 chr15 101991189 + 40720740 40720788 L1MB7 1623 + 139 187 89375 48 chain 3906 chr15 101991189 + 40721878 40722060 L1MB3 1562 + 1140 1287 92076 30 122 87 30 chain 3521 chr15 101991189 + 40750020 40750061 Tigger3c 601 + 61 102 95098 41 chain 5091 chr15 101991189 + 40810298 40810365 MADE1 96 + 11 94 85194 38 0 16 29 chain 23602 chr15 101991189 + 40836985 40837278 AluSp 311 + 15 304 51425 171 0 3 106 7 0 9 chain 115624 chr15 101991189 + 40961434 40962899 LTR12C 1709 + 0 1709 16299 577 2 1 74 0 2 87 0 237 133 1 0 5 3 1 107 0 4 116 56 53 43 0 9 48 1 0 212 chain 7117 chr15 101991189 + 41118714 41118805 MER2 342 + 152 245 77200 75 0 2 16 chain 38166 chr15 101991189 + 41131295 41131806 LTR7B 505 + 0 495 35935 208 17 15 9 2 0 6 24 12 245 chain 60152 chr15 101991189 + 41135449 41136241 HERVH-int 3825 + 3024 3825 26330 219 16 17 194 0 2 39 1 3 225 1 5 97 chain 16405 chr15 101991189 + 41137435 41137612 LTR7B 505 + 0 177 60511 177 chain 7581 chr15 101991189 + 41141628 41141737 LTR9B 643 + 453 562 75906 17 2 1 54 1 2 35 chain 16848 chr15 101991189 + 41152110 41152357 LTR12C 1709 + 774 997 59979 63 1 0 75 0 2 67 25 0 16 chain 10133 chr15 101991189 + 41211974 41212137 L1MB8 1703 + 941 1106 70138 44 24 26 95 chain 146561 chr15 101991189 + 41320256 41321917 SVA_D 2077 + 4 2056 12572 16 0 9 295 6 1 446 1 0 137 1 0 8 0 36 82 14 367 655 chain 136567 chr15 101991189 + 41381961 41384054 SVA_F 1814 + 335 1814 13382 225 0 1 330 627 0 56 0 15 49 1 0 166 1 0 10 1 0 627 chain 3704 chr15 101991189 + 41382516 41382561 SVA_F 1814 + 940 1000 78738 7 0 15 38 chain 12434 chr15 101991189 + 41382561 41382750 SVA_F 1814 + 937 1091 43410 10 1 15 16 49 0 113 chain 3848 chr15 101991189 + 41382590 41382637 SVA_F 1814 + 1107 1154 59218 47 chain 2047 chr15 101991189 + 41382750 41382775 SVA_F 1814 + 1267 1291 59218 7 1 0 17 chain 21108 chr15 101991189 + 41382792 41383143 SVA_F 1814 + 892 1131 38850 56 0 15 83 127 0 85 chain 4605 chr15 101991189 + 41382931 41383001 SVA_F 1814 + 1222 1291 43410 52 1 0 17 chain 4821 chr15 101991189 + 41383001 41383058 SVA_F 1814 + 1116 1222 72079 42 1 50 14 chain 28535 chr15 101991189 + 41399572 41399881 AluYa5 310 + 0 307 44063 123 2 0 184 chain 34645 chr15 101991189 + 41586619 41587399 MER41A 554 + 60 532 38257 88 316 0 145 0 1 174 27 34 30 chain 167671 chr15 101991189 + 41587507 41590545 HERVIP10F-int 4088 + 428 3315 11235 6 1 0 11 1 0 11 3 2 16 56 45 18 1 0 31 1 0 33 46 40 14 1 0 7 0 1 7 1 0 10 1 0 23 7 5 8 1 0 45 1 0 4 4 2 33 1 0 7 1 0 59 1 0 3 1 0 28 2 1 10 1 0 20 1 0 8 1 0 5 14 6 7 1 0 13 57 49 39 2 0 11 1 0 4 5 4 13 21 16 24 7 4 23 5 4 8 1 0 43 1 0 131 11 7 11 1 0 8 17 12 14 1 0 12 7 5 23 1 0 6 31 42 45 8 6 18 1 0 62 1 0 32 25 21 421 1 0 65 1 0 84 1 0 72 1 0 17 2 1 134 1 0 397 0 1 129 39 36 45 165 129 7 1 0 15 17 8 14 27 23 11 2 1 10 3 0 7 19 11 13 chain 29607 chr15 101991189 + 41592739 41593518 LTR10F 562 + 6 528 42476 137 1 29 18 58 5 14 1 32 20 8 29 101 296 15 99 3 0 23 chain 5767 chr15 101991189 + 41615231 41615299 U3 216 + 0 68 82046 68 chain 21967 chr15 101991189 + 41623463 41623744 AluSp 311 + 1 299 53881 163 15 32 103 chain 3002 chr15 101991189 + 41671240 41671272 MER2B 336 + 81 113 99818 32 chain 28459 chr15 101991189 + 41725551 41725853 AluYa5 310 + 0 300 44183 97 2 0 203 chain 3831 chr15 101991189 + 41732913 41732956 MER41A 554 + 398 441 92636 43 chain 8482 chr15 101991189 + 41745208 41745300 SVA_E 1901 + 1809 1901 73715 92 chain 14836 chr15 101991189 + 41757290 41757483 MER2 342 + 82 274 62469 30 1 0 162 chain 23687 chr15 101991189 + 41772347 41772649 AluSc5 308 + 0 306 51293 84 0 1 149 0 2 37 5 6 27 chain 23872 chr15 101991189 + 41878796 41879081 AluYa5 310 + 11 293 50993 120 0 1 118 0 1 35 5 0 7 chain 59614 chr15 101991189 + 41962641 41963309 SVA_B 1603 + 940 1603 26479 28 5 1 7 1 0 627 chain 24937 chr15 101991189 + 41969268 41969556 AluSp 311 + 4 294 49373 271 0 2 17 chain 19199 chr15 101991189 + 41977269 41977564 L1MB2 1706 + 1379 1656 57349 48 7 0 146 1 0 4 13 5 16 1 0 13 1 0 45 chain 11246 chr15 101991189 + 42090832 42091012 MER65D 500 + 201 382 68171 37 0 1 43 0 3 12 0 1 32 28 24 28 chain 89222 chr15 101991189 + 42091150 42092153 LTR13 1007 + 0 1007 19820 304 1 0 149 0 1 41 0 4 508 chain 168752 chr15 101991189 + 42195428 42197331 L1PA5 6144 + 4239 6139 11165 293 0 1 743 0 4 107 6 0 498 1 0 86 2 1 167 chain 7589 chr15 101991189 + 42226321 42226493 Tigger1 2417 + 2208 2332 75893 30 11 13 72 50 0 9 chain 100335 chr15 101991189 + 42299523 42300737 L1PA8A 6298 + 4747 5969 18257 274 8 0 408 6 13 46 0 3 79 0 2 174 0 4 219 chain 408841 chr15 101991189 + 42301062 42306026 L1PA7 6471 + 0 6393 5035 91 10 9 242 1 12 49 2 0 398 0 2 432 0 2 119 0 1 111 1 0 501 3 0 25 12 16 25 1 0 585 10 12 520 1 0 190 1 1393 93 0 2 354 0 1 8 0 4 405 1 5 7 0 3 82 0 5 190 0 2 91 0 3 403 chain 118111 chr15 101991189 + 42334742 42336756 L1PREC2 3366 + 1279 3215 15871 20 28 19 65 12 87 293 0 2 441 3 0 97 5 7 431 17 0 11 2 0 44 15 14 6 0 2 32 1 0 4 3 0 10 32 24 11 12 7 15 3 1 29 4 1 11 24 10 33 10 8 5 0 1 30 2 0 9 1 0 4 1 0 8 211 125 19 chain 12731 chr15 101991189 + 42486577 42486786 MER6 865 + 650 861 65563 124 33 32 33 5 8 14 chain 4724 chr15 101991189 + 42565613 42565673 MER5A1 166 + 97 157 87109 60 chain 2893 chr15 101991189 + 42573318 42573349 Tigger2 2703 + 849 880 100912 31 chain 105307 chr15 101991189 + 42654417 42656074 L1PB1 5432 + 3450 4814 17645 270 0 5 304 307 0 50 1 0 438 5 14 97 0 1 66 0 1 12 1 0 106 chain 3498 chr15 101991189 + 42751394 42751449 L1MB3 1562 + 1498 1552 95258 22 4 3 29 chain 28033 chr15 101991189 + 42761853 42762203 THE1B 368 + 4 368 44808 40 0 15 107 8 6 26 0 2 93 1 0 75 chain 16685 chr15 101991189 + 42762203 42762430 L1MA5A 2387 + 1791 2033 60168 22 3 0 82 1 19 119 chain 529423 chr15 101991189 + 42764136 42770247 L1PA6 6164 + 0 6156 1859 465 1 0 474 0 25 72 9 1 716 4 3 569 12 0 813 0 21 141 0 1 27 0 1 1036 0 4 280 1 0 515 1 0 154 0 4 415 0 2 7 0 4 81 0 1 200 0 6 118 chain 33187 chr15 101991189 + 42802722 42803159 MLT2A1 477 + 0 477 39368 143 0 4 21 1 5 212 4 0 10 9 45 37 chain 14566 chr15 101991189 + 42806744 42806934 MER30 238 + 38 238 62831 69 4 17 75 3 0 39 chain 7727 chr15 101991189 + 42823738 42823840 MER30 238 + 124 229 75542 35 1 7 33 3 0 30 chain 6213 chr15 101991189 + 42854488 42854587 MER6B 211 + 111 211 80305 13 1 0 60 7 9 18 chain 2911 chr15 101991189 + 42882768 42882806 L1MEf 1413 + 941 979 100748 38 chain 28387 chr15 101991189 + 42884758 42885171 LTR7B 505 + 0 491 44293 108 0 10 33 3 101 28 29 0 82 1 0 36 0 1 42 14 13 37 chain 231409 chr15 101991189 + 42885231 42888516 HERVH-int 3825 + 45 3825 8711 12 30 34 65 0 1 8 0 5 68 0 1 29 0 1 64 2 1 117 22 0 7 21 45 18 23 230 4 0 1 24 2 0 7 3 8 342 54 57 29 15 0 201 1 0 6 9 0 105 18 19 48 0 1 85 0 27 30 2 1 204 0 35 15 0 2 43 31 50 178 11 12 5 1 0 547 2 0 202 0 1 80 8 218 487 chain 27824 chr15 101991189 + 42889959 42890338 LTR7B 505 + 0 488 45147 104 0 10 41 0 97 26 0 2 85 1 0 31 0 1 44 14 13 13 0 1 20 chain 36472 chr15 101991189 + 42907037 42907656 L1MA4 2864 + 2068 2686 37091 50 0 2 22 21 7 41 2 5 33 9 7 43 9 10 16 1 0 30 3 0 96 0 2 20 6 8 28 7 0 8 3 21 124 5 6 28 3 0 11 chain 19872 chr15 101991189 + 42932184 42932550 THE1D 372 + 0 357 56580 37 20 12 23 13 14 11 7 8 5 1 0 56 22 19 6 0 4 30 4 1 131 chain 188610 chr15 101991189 + 42947371 42949439 L1PA3long 6157 + 4082 6157 10184 768 0 4 642 0 3 658 chain 69848 chr15 101991189 + 42969609 42970411 L1PA7 6471 + 4570 5378 24030 156 0 5 610 0 1 36 chain 3225 chr15 101991189 + 42990806 42990841 MIR 256 + 37 72 97703 35 chain 136209 chr15 101991189 + 43004376 43006104 SVA_B 1603 + 6 1603 13418 14 5 31 18 14 1 126 1 0 396 1 2 258 88 0 69 4 0 41 4 0 14 1 0 14 48 0 19 1 0 158 0 2 434 chain 150269 chr15 101991189 + 43013853 43015653 SVA_D 2077 + 6 2071 12328 5 2 0 4 0 1 4 0 1 684 1 4 96 40 0 103 1 0 8 2 1 30 9 0 4 0 1 40 0 1 4 0 1 36 5 9 5 0 1 43 0 1 9 0 304 32 1 2 9 0 1 609 2 0 12 chain 23776 chr15 101991189 + 43035825 43036088 L1PA2 6032 + 5765 6025 51152 254 3 0 6 chain 135019 chr15 101991189 + 43040003 43041602 L1PA5 6144 + 4537 6144 13543 220 1 0 257 0 1 127 0 5 146 1 0 4 19 23 115 1 0 554 1 8 9 31 25 113 chain 22840 chr15 101991189 + 43061381 43061939 L1PB1 5432 + 4972 5413 52604 25 1 0 33 2 1 46 0 6 20 81 4 8 13 0 23 1 0 9 17 12 8 2 0 52 1 0 17 2 1 44 1 0 11 8 5 11 9 0 19 8 5 14 2 0 13 0 8 7 9 0 16 2 1 13 1 0 9 chain 151386 chr15 101991189 + 43076002 43077659 SVA_E 1901 + 0 1896 12262 145 6 0 179 3 0 76 0 76 341 1 0 22 1 171 636 0 3 247 chain 8413 chr15 101991189 + 43117662 43117782 AluSc 308 + 0 105 73869 37 15 0 68 chain 8342 chr15 101991189 + 43126404 43126530 L1MB3 1562 + 1190 1316 74046 11 1 0 60 3 0 6 7 11 38 chain 77348 chr15 101991189 + 43128123 43129138 MER11A 1151 + 0 1146 22231 69 0 99 59 2 1 66 4 0 149 0 1 94 0 1 145 3 6 134 0 49 11 18 0 36 0 1 46 1 0 16 3 4 159 chain 200933 chr15 101991189 + 43175700 43178002 L1PA3long 6157 + 6 6152 9689 730 0 1 309 1 0 20 1 0 441 8 3849 471 0 3 176 3 4 142 chain 28134 chr15 101991189 + 43197771 43198123 THE1A 353 + 0 353 44665 109 2 1 120 0 1 115 0 1 6 chain 126260 chr15 101991189 + 43198123 43199686 THE1A-int 1579 + 0 1579 14513 116 1 3 149 0 3 626 7 8 277 4 0 33 6 19 106 0 1 238 chain 5445 chr15 101991189 + 43224437 43224502 MER41B 635 + 481 547 83487 27 0 1 38 chain 4269 chr15 101991189 + 43237467 43237537 MER53 195 + 0 74 89707 32 9 13 29 chain 8169 chr15 101991189 + 43247683 43247779 HY3 101 + 4 100 74488 96 chain 29313 chr15 101991189 + 43368243 43368554 AluYa5 310 + 0 310 42867 132 1 0 178 chain 21915 chr15 101991189 + 43440280 43440536 AluY 311 + 51 304 53949 82 3 0 171 chain 28889 chr15 101991189 + 43452912 43453218 AluYk12 309 + 0 306 43498 306 chain 9837 chr15 101991189 + 43464997 43465152 L1MB8 1703 + 1429 1583 70743 6 2 0 76 11 10 5 0 2 55 chain 14446 chr15 101991189 + 43497592 43497870 L1MB3 1562 + 1305 1551 62972 47 1 0 67 58 28 77 10 9 18 chain 13499 chr15 101991189 + 43543263 43543415 L1PA4 6152 + 5989 6141 64316 152 chain 6482 chr15 101991189 + 43545938 43546008 MER41B 635 + 479 549 79402 70 chain 543467 chr15 101991189 + 43649975 43655988 L1PA3long 6157 + 17 6144 1108 135 0 1 623 0 128 844 0 1 641 0 3 18 26 7 3726 chain 10444 chr15 101991189 + 43741370 43741515 MER1B 344 + 92 253 69532 85 11 27 49 chain 23301 chr15 101991189 + 43757962 43758241 AluSp 311 + 0 286 51925 47 1 7 161 0 1 70 chain 7586 chr15 101991189 + 43779792 43779937 Charlie4a 502 + 61 208 75898 75 35 37 35 chain 4664 chr15 101991189 + 43816571 43816645 MER119 576 + 426 491 87462 54 9 0 11 chain 21611 chr15 101991189 + 43897738 43898093 THE1D 372 + 0 372 54339 96 0 1 10 0 1 52 57 66 12 4 10 124 chain 209043 chr15 101991189 + 43960938 43963264 L1PA4 6152 + 3023 5348 9381 148 2 1 1587 0 1 4 1 0 584 chain 7662 chr15 101991189 + 43990267 43990384 Tigger1 2417 + 2299 2416 75723 48 1 0 22 8 9 38 chain 27997 chr15 101991189 + 44031961 44032428 L1PA14 3548 + 3026 3465 44869 84 2 0 5 5 3 13 2 0 6 1 0 16 6 5 61 1 0 49 0 1 63 1 0 11 5 1 33 7 5 5 1 0 11 1 0 17 1 0 12 4 0 28 6 0 10 chain 506200 chr15 101991189 + 44038557 44044919 L1PA7 6471 + 1 6468 2924 200 11 10 118 11 181 239 0 15 241 1 25 6 24 0 20 0 7 5 8 1 402 0 1 264 1 2 31 0 8 101 0 2 752 32 0 177 1 0 64 0 1 82 82 1 540 1 0 316 0 4 440 1 2 415 0 4 943 0 4 351 8 15 140 0 1 211 0 1 76 19 19 17 1 2 10 chain 6004 chr15 101991189 + 44058221 44058322 L1MB8 1703 + 1488 1585 81062 31 19 15 51 chain 60835 chr15 101991189 + 44076102 44076780 L1PA3long 6157 + 5476 6157 26149 666 0 3 12 chain 20222 chr15 101991189 + 44122627 44122910 AluY 311 + 25 299 56113 27 17 1 78 3 0 44 0 13 102 3 0 9 chain 9485 chr15 101991189 + 44133115 44133242 AluSc5 308 + 182 297 71506 108 12 0 7 chain 8762 chr15 101991189 + 44138792 44138919 L1MB8 1703 + 1457 1586 73075 47 4 5 4 0 1 72 chain 14784 chr15 101991189 + 44174852 44175070 L1PA8 5853 + 5638 5853 62551 27 0 1 16 1 0 11 9 8 39 2 1 19 2 1 92 chain 3716 chr15 101991189 + 44175533 44175830 L1ME1 1623 + 1235 1522 93491 43 234 224 20 chain 130906 chr15 101991189 + 44226015 44227537 L1PA6 6164 + 4639 6162 13939 725 1 0 4 0 1 38 0 3 595 1 0 32 0 1 118 2 0 6 chain 85610 chr15 101991189 + 44228594 44229613 LTR5A 1029 + 0 1029 20517 135 4 17 356 4 0 92 12 13 416 chain 558557 chr15 101991189 + 44252034 44258049 L1PA2 6032 + 12 6030 219 1265 0 3 4750 chain 26549 chr15 101991189 + 44268685 44268996 AluYb8 318 + 10 308 46899 108 4 0 8 2 0 121 7 0 61 chain 415324 chr15 101991189 + 44359620 44364203 L1PA3long 6157 + 1560 6156 4951 994 6 6 639 0 3 27 0 4 29 0 1 480 0 3 547 0 2 1284 0 1 560 1 0 16 chain 8478 chr15 101991189 + 44365543 44365831 L1MC1 2226 + 1931 2182 73724 49 107 83 20 5 0 15 5 8 14 18 9 6 1 0 17 1 0 30 chain 23215 chr15 101991189 + 44544740 44545016 AluSc 308 + 17 293 52060 276 chain 144904 chr15 101991189 + 44644208 44646240 L1PA15 4387 + 2289 4265 12698 82 0 1 49 26 41 389 3 0 105 9 13 89 0 2 104 5 4 81 57 10 183 0 1 213 1 0 63 0 5 88 2 0 57 19 0 21 5 3 34 10 9 168 1 0 26 1 0 55 1 0 22 17 12 46 chain 2839 chr15 101991189 + 44654118 44654177 Tigger2b_Pri 1066 + 127 185 101333 15 16 15 28 chain 544008 chr15 101991189 + 44682794 44689862 L1PA7 6471 + 0 6461 1085 224 0 2 174 1 3 432 4 0 582 1 2 52 0 1 287 0 1 45 1 0 720 311 0 110 1 3 911 3 7 268 5 6 189 2 0 588 0 2 62 0 4 202 0 9 17 304 0 116 14 1 184 1 0 416 2 1 199 0 1 640 chain 473226 chr15 101991189 + 44739240 44744466 L1PA3long 6157 + 0 6157 3782 810 0 1 501 0 916 2125 0 4 509 1 2 442 0 4 43 0 3 22 1 2 90 0 1 682 chain 72731 chr15 101991189 + 44770426 44771400 MER11A 1151 + 1 1120 23373 56 0 98 73 0 5 56 8 5 38 0 2 54 0 1 54 0 1 89 3 5 21 1 0 9 0 1 104 6 9 8 1 0 53 1 5 70 7 41 226 7 6 29 chain 22208 chr15 101991189 + 44800985 44801272 L1PA4 6152 + 5865 6152 53541 27 1 0 107 7 0 7 3 6 129 0 5 6 chain 2989 chr15 101991189 + 44815141 44815187 MLT2B4 540 + 492 532 99976 6 6 0 34 chain 8702 chr15 101991189 + 44843611 44843722 HY1 111 + 0 111 73206 111 chain 81152 chr15 101991189 + 44857562 44858447 L1PA3long 6157 + 5258 6142 21400 744 1 0 140 chain 499508 chr15 101991189 + 44865791 44872299 L1PA6 6164 + 0 6160 3146 64 0 1 320 0 13 12 0 1 46 17 16 67 0 1 647 0 3 290 6 7 19 1 0 221 0 1 135 23 0 173 336 0 227 0 2 923 0 2 88 7 8 51 0 2 596 1 2 28 0 3 4 1 0 169 3 4 23 29 18 181 0 2 309 1 0 5 10 3 237 1 2 217 0 4 175 0 1 273 4 1 500 0 1 54 6 0 8 chain 10903 chr15 101991189 + 44884618 44884781 U1 164 + 3 164 68694 71 20 18 72 chain 4662 chr15 101991189 + 44949462 44949520 MSTB2 466 + 0 58 87469 58 chain 8214 chr15 101991189 + 44962829 44962928 U6 107 + 0 102 74368 44 0 3 55 chain 23003 chr15 101991189 + 44989584 44989871 AluY 311 + 3 288 52351 123 4 0 150 0 2 10 chain 412621 chr15 101991189 + 44991143 44996328 L1PA6 6164 + 1030 6160 4994 254 0 1 209 0 1 483 1 0 347 14 0 215 0 3 352 0 3 108 0 1 176 1 2 81 0 4 40 277 19 200 2 1 720 1 0 666 1 2 546 0 1 138 0 203 25 3 4 325 chain 24241 chr15 101991189 + 44993424 44993700 L1PA6 6164 - 727 1002 49875 129 1 0 146 chain 27955 chr15 101991189 + 45010299 45010754 LTR12F 595 + 15 571 44937 57 0 143 31 3 2 10 44 2 132 1 0 9 26 27 11 0 1 131 chain 294005 chr15 101991189 + 45010807 45021428 HERV9-int 5642 + 12 3750 7011 391 0 1 293 24 0 19 6 0 130 2 0 188 3 0 7 0 3 20 6 3 5 0 3 4 0 1 5 1 0 22 2 0 393 4 0 86 0 3 194 322 0 474 0 1 335 0 3 825 22 25 90 6 0 12 6528 0 202 chain 94979 chr15 101991189 + 45034652 45036266 LTR12E 1234 + 0 1234 18912 31 8 0 420 1 0 6 2 3 231 41 0 149 11 22 221 101 0 26 20 13 48 234 0 64 chain 4129 chr15 101991189 + 45035820 45035863 LTR12E 1234 + 1028 1071 90596 43 chain 3691 chr15 101991189 + 45036054 45036096 LTR12E 1234 + 1028 1070 93672 42 chain 3647 chr15 101991189 + 45036096 45036134 LTR12E 1234 + 1071 1109 94046 38 chain 26542 chr15 101991189 + 45037612 45037966 L1PA8 5853 + 5505 5853 46905 59 1 0 44 2 0 71 1 0 9 1 0 52 2 1 15 6 5 54 0 1 37 chain 122503 chr15 101991189 + 45055239 45056583 L1PA3long 6157 + 3241 4592 15112 20 0 2 521 0 1 572 0 4 231 chain 23934 chr15 101991189 + 45142447 45142730 AluSp 311 + 4 289 50890 272 0 2 11 chain 6496 chr15 101991189 + 45201152 45201222 tRNA-His-CAY_ 70 + 0 70 79371 70 chain 66880 chr15 101991189 + 45268446 45269177 L1PA3long 6157 + 5426 6157 24727 731 chain 59836 chr15 101991189 + 45284411 45285481 MER4E 760 + 0 760 26420 27 0 1 107 0 2 15 0 2 232 0 13 19 2 0 105 0 1 46 328 0 40 1 0 141 0 2 7 chain 5746 chr15 101991189 + 45291403 45291475 MER53 195 - 98 170 82143 72 chain 26595 chr15 101991189 + 45296628 45296982 THE1A 353 + 0 353 46843 13 2 0 4 0 1 30 0 1 41 7 6 257 chain 126652 chr15 101991189 + 45296982 45299213 THE1A-int 1579 + 0 1574 14458 108 0 1 15 1 0 367 311 3 16 20 0 10 0 7 471 0 2 255 338 0 319 chain 1392 chr15 101991189 + 45311871 45312016 MSTA 426 + 31 200 64665 35 0 1 4 1 0 28 25 49 52 chain 81424 chr15 101991189 + 45312016 45313050 L1PA8 5853 + 4809 5853 21352 167 0 19 14 0 3 197 1 0 12 0 1 342 1 0 43 9 2 69 4 3 11 1 0 47 4 3 18 3 2 91 chain 883 chr15 101991189 + 45313162 45313254 MSTA 426 + 264 376 64665 32 2 22 58 chain 103425 chr15 101991189 + 45313909 45315184 LTR12C 1709 + 0 1709 17896 566 12 7 77 0 278 148 0 47 101 2 6 57 1 2 107 0 102 71 1 9 47 1 0 84 chain 91541 chr15 101991189 + 45318260 45319323 L1PA6 6164 + 5105 6162 19408 415 1 0 632 5 0 10 chain 36035 chr15 101991189 + 45323479 45323982 PRIMA4_LTR 623 + 0 611 37396 166 9 32 61 7 10 93 11 91 97 3 5 56 chain 23608 chr15 101991189 + 45327891 45328226 MER4B 649 + 0 372 51417 30 1 0 62 29 30 35 0 42 165 5 0 8 chain 14283 chr15 101991189 + 45347361 45347519 L1PA5 6144 + 5986 6144 63215 158 chain 3645 chr15 101991189 + 45371270 45371326 Tigger13a 716 + 583 642 94060 45 1 0 4 0 4 6 chain 54804 chr15 101991189 + 45472253 45472886 LTR6A 649 + 0 635 27946 44 1 2 301 1 0 89 0 2 197 chain 16065 chr15 101991189 + 45489606 45489779 L1PA4 6152 + 5978 6151 60940 173 chain 5263 chr15 101991189 + 45489879 45490037 MER58A 224 + 49 209 84372 36 81 83 41 chain 10052 chr15 101991189 + 45587984 45588149 MER105 203 + 32 203 70298 48 13 17 85 7 9 12 chain 8517 chr15 101991189 + 45591983 45592082 HY3 101 + 0 99 73646 99 chain 226074 chr15 101991189 + 45597902 45600342 L1PA2 6032 + 3581 6030 8859 208 0 2 85 0 3 1303 0 4 844 chain 21775 chr15 101991189 + 45622716 45623017 AluSp 311 + 1 307 54126 52 13 18 178 1 0 28 4 5 25 chain 191398 chr15 101991189 + 45623068 45625577 L1PA6 6164 + 3915 6162 10049 16 0 1 280 4 7 49 1 0 94 0 4 52 0 4 685 0 7 39 0 1 637 281 0 371 chain 26332 chr15 101991189 + 45630952 45631306 THE1A 353 + 0 353 47223 106 15 14 233 chain 8210 chr15 101991189 + 45701278 45701438 MER58A 224 + 44 207 74387 33 30 35 50 8 6 39 chain 3509 chr15 101991189 + 45767152 45767198 MER58A 224 + 41 85 95176 38 2 0 6 chain 25158 chr15 101991189 + 45767398 45767679 L1PA3long 6157 + 5871 6153 49022 77 0 1 204 chain 86136 chr15 101991189 + 45812430 45813637 L1M1 2793 + 914 2106 20407 89 27 26 65 0 2 83 1 0 59 4 0 13 4 0 21 11 1 25 0 1 197 0 1 55 0 1 5 1 0 426 1 4 46 2 0 72 chain 33373 chr15 101991189 + 45815003 45815400 LTR3 431 + 26 422 39197 236 1 0 160 chain 23341 chr15 101991189 + 45846694 45846978 LTR12C 1709 + 1293 1709 51866 218 6 138 60 chain 4847 chr15 101991189 + 45855841 45855898 MSTB2 466 + 84 141 86443 57 chain 315947 chr15 101991189 + 45874948 45879433 L1PB1 5432 + 927 5404 6485 105 2 1 209 0 4 140 26 36 95 0 8 56 0 1 21 0 1 135 11 7 18 1 0 43 1 12 77 0 1 261 0 1 40 0 3 50 15 24 55 6 7 155 11 0 30 10 6 313 1 0 93 0 1 71 3 2 191 0 6 179 5 4 43 5 10 278 1 0 14 47 30 16 1 0 5 1 2 194 0 5 642 5 0 11 0 1 286 2 0 122 6 7 26 0 4 11 11 12 6 3 0 20 1 0 8 1 0 14 18 12 40 1 0 12 2 1 17 1 0 44 1 0 14 2 0 6 15 6 18 13 10 10 2 0 24 1 0 21 1 0 13 chain 88110 chr15 101991189 + 45885790 45887018 LTR12D 1347 + 0 1347 20027 202 25 20 26 0 1 48 8 44 195 74 25 133 0 41 250 0 97 116 3 1 148 chain 3949 chr15 101991189 + 45886294 45886341 LTR12D 1347 + 645 693 77414 14 0 1 33 chain 8094 chr15 101991189 + 45946586 45946690 MER5A 189 + 10 114 74653 20 1 0 79 0 1 4 chain 6018 chr15 101991189 + 45985560 45985650 L1PA10 4194 + 4062 4150 81009 43 0 2 5 8 4 34 chain 278768 chr15 101991189 + 46046459 46049546 L1PA3long 6157 + 3053 6146 7460 951 0 2 19 1 0 332 0 4 1110 0 1 674 chain 22648 chr15 101991189 + 46092294 46092604 AluSp 311 + 0 293 52906 55 18 4 69 2 0 71 0 4 84 5 0 6 chain 547219 chr15 101991189 + 46104553 46110664 L1PA3long 6157 + 20 6157 909 690 6 13 466 0 3 1130 0 4 940 0 4 734 0 3 724 15 0 573 0 4 416 0 11 88 0 1 278 0 4 51 chain 66247 chr15 101991189 + 46214415 46215463 L1PB1 5432 + 4377 5422 24894 98 1 5 76 1 10 50 8 5 86 0 1 96 0 6 286 30 28 14 27 21 9 2 0 52 2 1 16 1 0 44 1 0 15 22 12 18 1 0 4 2 1 15 2 0 24 1 0 9 0 3 9 0 6 7 1 0 18 chain 52356 chr15 101991189 + 46333792 46334366 L1PA3long 6157 + 5583 6157 28772 574 chain 87647 chr15 101991189 + 46368521 46369491 L1P1 4361 + 2592 3562 20108 970 chain 108908 chr15 101991189 + 46379264 46380514 L1PA5 6144 + 1603 2873 17193 100 1 0 137 0 5 750 0 1 163 0 15 99 chain 36445 chr15 101991189 + 46400161 46400637 L1PA7 6471 + 5976 6468 37106 25 0 2 127 2 1 110 0 2 38 8 18 43 0 3 123 chain 519443 chr15 101991189 + 46424929 46431059 L1PA5 6144 + 0 6144 2295 346 26 27 498 0 7 291 9 0 70 1 0 365 8 4 692 0 1 261 0 4 32 1 0 354 0 1 209 1 2 37 0 1 43 0 4 612 0 1 9 1 2 360 0 1 38 0 1 68 0 2 1572 4 7 222 chain 56779 chr15 101991189 + 46457804 46458480 L1PA7 6471 + 5540 6219 27332 74 0 3 253 0 1 260 1 0 88 chain 38137 chr15 101991189 + 46463780 46464389 MER51A 677 + 0 661 35965 110 26 31 29 40 22 101 0 72 167 10 11 44 8 0 74 chain 139494 chr15 101991189 + 46473712 46475392 L1PA7 6471 + 4783 6470 13141 79 0 2 120 0 1 636 1 0 552 7 10 115 9 11 161 chain 102671 chr15 101991189 + 46491214 46495496 L1PB2 3958 + 213 3838 17986 14 5 2 135 1 0 39 40 23 160 15 19 94 0 1 149 5 0 7 8 19 130 1 0 166 16 17 5 0 1 111 2621 1960 44 2 0 54 12 8 5 3 0 63 2 0 12 2 0 65 23 22 77 0 28 38 1 0 31 0 6 7 7 4 26 2 0 21 1 0 62 chain 118156 chr15 101991189 + 46531019 46532724 L1PB1 5432 + 3675 5427 15859 45 0 9 575 0 1 72 2 3 190 60 133 148 3 1 251 10 9 19 17 15 10 2 0 3 2 0 9 2 0 52 2 1 10 6 5 41 34 20 30 7 4 15 2 0 18 7 6 21 1 0 13 1 0 18 2 0 5 chain 96684 chr15 101991189 + 46614311 46615469 L1P1 4361 + 4 1154 18693 570 1 0 118 7 0 462 chain 3430 chr15 101991189 + 46636122 46636162 UCON12 82 - 10 50 95821 40 chain 23986 chr15 101991189 + 46680149 46680555 LTR7 482 + 0 477 50812 44 54 42 15 15 14 17 2 53 35 1 2 8 0 31 28 0 1 187 chain 37730 chr15 101991189 + 46683065 46683762 MER50 708 + 0 693 36254 50 38 0 8 3 0 37 8 9 62 5 6 103 59 61 22 7 43 83 1 0 122 36 34 53 chain 83034 chr15 101991189 + 46741638 46744262 L1PA7 6471 + 923 3578 7327 213 0 1 76 0 4 198 0 1 442 1 0 302 0 5 466 2 1 100 0 1 39 0 1 313 0 1 5 1 0 4 0 4 372 0 9 68 9 13 9 0 3 4 chain 424070 chr15 101991189 + 46745002 46749615 L1PA2 6032 + 1415 6029 4827 3017 0 1 1596 chain 30378 chr15 101991189 + 46749638 46750598 L1PA7 6471 + 3578 6466 7327 361 1 0 7 0 1 12 0 1914 168 0 2 121 0 4 145 0 8 145 chain 244777 chr15 101991189 + 46832237 46834934 L1PA3long 6157 + 3453 6157 8355 491 0 1 179 0 3 434 0 1 771 0 1 405 0 1 417 chain 16102 chr15 101991189 + 46884809 46885018 LTR66 600 + 0 214 60888 13 0 7 68 2 0 126 chain 19370 chr15 101991189 + 46885623 46885896 Tigger3a 397 + 41 366 57162 29 20 72 224 chain 119565 chr15 101991189 + 46909334 46910892 L1PA10 4194 + 1228 2775 15598 317 1 0 35 5 0 84 1 0 103 3 0 851 5 6 32 3 1 118 chain 26785 chr15 101991189 + 46949519 46949812 AluYa5 310 + 15 306 46563 108 2 0 183 chain 31659 chr15 101991189 + 46980488 46980891 MLT2A1 477 + 0 393 40615 169 4 1 111 2 1 103 6 0 8 chain 4637 chr15 101991189 + 46981949 46982028 MADE1 96 + 0 96 87610 24 5 21 26 1 2 23 chain 198311 chr15 101991189 + 46986021 46988583 HERVL-int 5654 + 3027 5654 9762 77 0 4 884 1 17 10 2 5 10 0 4 20 0 1 648 0 1 162 0 3 5 4 1 20 3 6 5 0 1 91 5 6 151 10 20 48 7 6 42 9 35 111 13 9 77 0 1 4 1 0 142 chain 37365 chr15 101991189 + 46999189 46999588 L1HS 6032 + 4449 4848 36507 399 chain 87713 chr15 101991189 + 47131719 47132740 SVA_D 2077 + 0 1208 20090 30 1 18 11 13 0 149 2 1 47 0 1 621 0 183 147 chain 4066 chr15 101991189 + 47132753 47132832 SVA_E 1901 + 967 1046 38295 79 chain 103125 chr15 101991189 + 47132832 47134221 SVA_E 1901 + 669 1901 17939 49 1 2 13 0 39 18 211 14 8 1 0 5 1 0 110 4 0 39 6 13 116 1 0 806 chain 13180 chr15 101991189 + 47132913 47133124 SVA_E 1901 + 829 974 34873 11 95 0 23 1 0 6 0 1 8 19 45 35 1 4 12 chain 3548 chr15 101991189 + 47132924 47132974 SVA_E 1901 + 1012 1059 69556 2 0 1 26 9 5 13 chain 549852 chr15 101991189 + 47165532 47171560 L1PA2 6032 + 0 6027 755 255 2 1 71 0 1 570 1 0 110 0 1 5003 1 0 15 chain 13224 chr15 101991189 + 47224022 47224170 L1PA2 6032 + 5884 6032 64739 148 chain 33272 chr15 101991189 + 47239015 47239485 MER1A 529 + 67 524 39286 13 11 8 274 0 1 94 19 8 59 chain 10505 chr15 101991189 + 47272597 47272829 7SK 245 + 1 240 69410 81 100 107 51 chain 41333 chr15 101991189 + 47590068 47590532 L1PA6 6164 + 5693 6157 33772 464 chain 28807 chr15 101991189 + 47711027 47711331 AluYa5 310 + 0 303 43614 132 1 0 171 chain 36775 chr15 101991189 + 47780201 47780744 MER41C 542 + 0 542 36904 49 0 1 190 1 17 56 2 0 6 36 17 23 25 28 155 chain 9719 chr15 101991189 + 47827705 47827848 MER2 342 + 149 295 71005 88 0 2 35 8 9 12 chain 8856 chr15 101991189 + 47893162 47893290 L1P3 4156 + 4013 4139 72850 30 1 2 62 2 0 7 2 1 24 chain 32678 chr15 101991189 + 47894161 47894549 L1PA7 6471 + 6071 6467 39783 74 0 6 164 0 1 11 0 1 139 chain 3755 chr15 101991189 + 47907081 47907125 MADE1 96 + 2 46 93177 44 chain 10536 chr15 101991189 + 47912821 47912967 MER30 238 + 75 238 69346 31 3 23 61 3 0 48 chain 2652 chr15 101991189 + 47988481 47988510 MER5A 189 + 2 31 102713 29 chain 35486 chr15 101991189 + 48024167 48024664 MER75 514 + 0 513 37736 31 0 3 61 3 0 5 15 24 127 3 6 60 1 0 103 0 4 66 0 1 22 chain 60348 chr15 101991189 + 48043649 48044434 L1PA8 5853 + 5075 5853 26275 489 1 0 45 3 1 67 1 0 10 19 18 35 2 1 19 1 0 93 chain 156420 chr15 101991189 + 48054524 48056373 L1PA7 6471 + 4609 6459 11976 90 0 2 920 1 0 792 29 29 17 chain 22525 chr15 101991189 + 48082960 48083241 AluSp 311 + 10 294 53079 150 1 4 130 chain 5929 chr15 101991189 + 48161808 48161902 MADE1 96 + 2 96 81363 36 0 1 8 9 8 41 chain 12228 chr15 101991189 + 48349895 48350145 L1PB1 5432 + 5191 5413 66421 29 2 1 16 1 0 43 1 0 16 3 0 7 14 5 15 21 13 10 2 0 24 1 0 21 1 0 13 1 0 9 chain 123240 chr15 101991189 + 48376112 48377704 THE1B-int 1605 + 8 1598 14986 269 31 5 9 3 4 121 10 35 78 2 1 905 0 1 56 2 0 106 chain 23781 chr15 101991189 + 48377714 48378064 THE1B 368 + 3 368 51141 12 9 7 15 0 5 31 15 29 70 2 1 123 1 0 72 chain 11631 chr15 101991189 + 48387162 48387302 MER47A 366 + 93 233 67515 140 chain 56891 chr15 101991189 + 48396909 48397526 L1PA3long 6157 + 5538 6157 27302 365 0 1 245 0 1 7 chain 7839 chr15 101991189 + 48411645 48411797 MER5A 189 + 34 189 75279 44 3 4 32 18 21 10 7 6 38 chain 37598 chr15 101991189 + 48578605 48579019 L1PA2 6032 + 5618 6032 36337 414 chain 8988 chr15 101991189 + 48588117 48588382 MER33 330 + 25 320 72583 18 5 20 17 105 111 63 1 2 38 1 9 17 chain 22266 chr15 101991189 + 48598810 48599147 THE1B 368 + 7 368 53456 37 6 21 12 0 7 28 2 0 17 9 13 24 8 6 27 0 2 167 chain 16212 chr15 101991189 + 48687801 48688026 L1MA3 4352 + 1377 1601 60725 11 1 2 92 2 0 46 1 0 59 0 1 13 chain 98341 chr15 101991189 + 48731411 48732655 L1PA8A 6298 + 5055 6288 18506 399 0 1 20 5 4 5 0 3 92 0 1 65 12 11 373 1 0 88 28 15 51 3 4 21 1 0 80 chain 192352 chr15 101991189 + 48874387 48877388 Charlie3 2679 + 17 2592 10003 17 1 0 4 5 8 452 0 3 77 0 1 316 4 5 309 0 62 10 0 1 4 1 0 329 0 3 156 1 0 52 3 0 38 6 10 114 0 2 108 522 3 11 0 14 397 12 17 52 chain 470303 chr15 101991189 + 49068559 49075066 L1PA7 6471 + 5 6438 3847 192 15 14 118 18 188 11 16 43 133 22 32 18 1 3 8 2 0 28 33 110 11 0 3 5 0 1 123 0 21 432 0 2 393 0 3 217 16 4 514 0 1 111 0 3 36 0 1 277 2 1 530 6 10 214 0 1 17 3 4 166 4 0 235 0 10 8 10 11 970 97 8 116 310 5 113 1 4 136 2 1 18 4 3 665 0 1 130 chain 5993 chr15 101991189 + 49164216 49164291 MER34A 573 + 0 75 81113 75 chain 33058 chr15 101991189 + 49175650 49176088 LTR2 463 + 0 463 39468 55 0 3 94 18 39 171 12 13 88 chain 6008 chr15 101991189 + 49190267 49190525 LTR37A 408 + 109 360 81046 18 165 158 75 chain 28573 chr15 101991189 + 49219137 49219506 THE1B 368 + 0 368 43994 172 2 1 92 0 1 4 1 0 98 chain 50463 chr15 101991189 + 49249618 49250208 LTR10C 591 + 0 591 29393 34 2 0 33 0 1 442 0 2 79 chain 53583 chr15 101991189 + 49317250 49317878 L1PA7 6471 + 5649 6281 28365 49 1 3 560 1 3 17 chain 2143 chr15 101991189 + 49317880 49317907 L1PA7 6471 + 6281 6308 105575 27 chain 7091 chr15 101991189 + 49317916 49317995 L1PA7 6471 + 6317 6396 77291 79 chain 5611 chr15 101991189 + 49317997 49318068 L1PA7 6471 + 6399 6469 82754 59 1 0 11 chain 550278 chr15 101991189 + 49354233 49360252 L1PA2 6032 + 1 6031 722 256 1 0 163 0 7 1588 0 7 1250 3 0 241 0 1 459 0 1 2044 2 1 12 chain 549895 chr15 101991189 + 49395983 49402006 L1PA2 6032 + 0 6024 753 71 1 2 184 1 0 1100 2 1 358 0 1 3256 1 2 1049 chain 23372 chr15 101991189 + 49413114 49413489 THE1B 368 + 0 366 51816 13 2 0 34 0 1 63 6 7 58 50 41 149 chain 23068 chr15 101991189 + 49416807 49417109 L1PREC2 3366 + 2489 2789 52264 263 7 5 32 chain 131895 chr15 101991189 + 49502956 49504427 L1PA4 6152 + 4671 6143 13838 1367 0 1 104 chain 84471 chr15 101991189 + 49546716 49547663 L1P1 4361 + 1410 2364 20718 38 0 4 131 0 1 207 0 2 571 chain 98602 chr15 101991189 + 49582032 49586211 L1PA13 3608 + 770 3522 18465 121 2 0 227 0 4 153 1 0 25 1 0 118 1 4 8 1 0 78 22 26 86 16 14 220 0 1 48 7 8 19 36 30 67 2574 1178 68 2 0 14 1 0 48 1 0 25 6 5 26 9 5 27 4 1 17 11 7 12 5 0 8 1 0 6 20 17 13 5 0 14 1 0 4 chain 26354 chr15 101991189 + 49583296 49583651 MER41A 554 + 117 466 47194 19 3 0 88 14 10 128 0 1 63 0 1 4 1 0 35 chain 91325 chr15 101991189 + 49584841 49585849 L1PA4 6152 + 5140 6148 19446 148 0 1 255 1 0 604 chain 123296 chr15 101991189 + 49596510 49598163 L1PBa 3878 + 1561 3219 14979 52 2 1 9 1 0 57 0 4 175 1 3 605 0 4 156 8 6 37 0 4 28 3 0 5 8 11 23 10 5 234 2 1 52 0 1 185 chain 33395 chr15 101991189 + 49614540 49615021 LOR1a 498 + 15 491 39180 32 1 2 135 34 28 62 4 1 152 0 3 61 chain 36699 chr15 101991189 + 49713991 49714425 L1PA7 6471 + 5712 6469 36957 166 0 323 268 chain 13266 chr15 101991189 + 49743023 49743236 L1MA3 4352 + 57 258 64684 52 11 1 45 3 6 14 5 0 83 chain 243821 chr15 101991189 + 49841338 49844484 HERVK22-int 3844 + 0 3137 8383 40 3 0 746 65 66 406 1 13 44 17 0 770 1 0 4 0 1 301 0 1 4 2 1 379 2 0 6 9 12 5 1 0 103 0 1 144 1 0 72 7 5 13 chain 5418 chr15 101991189 + 49850704 49850763 L1PA16 3655 - 874 933 83610 59 chain 4590 chr15 101991189 + 49883007 49883061 MER5B 177 + 48 102 87842 54 chain 2902 chr15 101991189 + 49887449 49887480 FordPrefect_a 431 + 357 388 100837 31 chain 7309 chr15 101991189 + 49948458 49948549 L1MB1 2102 + 1282 1373 76638 91 chain 12792 chr15 101991189 + 49954165 49954312 MLT2A2 560 + 413 560 65455 147 chain 22999 chr15 101991189 + 49962949 49963345 L1PA11 4918 + 4205 4578 52363 125 7 0 6 1 0 71 2 0 26 2 0 41 2 0 14 1 0 20 53 47 12 2 0 11 chain 541624 chr15 101991189 + 49965826 49972273 L1PA7 6471 + 3 6461 1226 62 7 8 338 0 1 267 14 17 588 0 1 423 2 0 553 1 0 242 0 2 135 0 1 1008 0 1 84 0 1 100 0 1 307 0 1 677 0 1 269 0 1 74 1 0 22 1 2 166 0 1 187 1 0 4 0 1 72 1 0 186 2 1 111 0 1 202 1 0 339 chain 45355 chr15 101991189 + 49999051 49999544 L1PA3long 6157 + 5664 6157 31393 493 chain 286208 chr15 101991189 + 50101355 50105240 L1PB1 5432 + 1578 5422 7253 894 1 2 26 5 1 324 8 5 10 1 2 44 0 3 118 2 1 603 0 2 89 19 26 112 0 5 146 0 1 516 12 17 21 1 0 85 5 0 176 38 46 193 1 0 52 33 8 7 3 0 23 0 3 7 5 0 10 2 0 3 2 0 9 2 0 52 2 1 11 5 4 45 1 0 15 1 0 4 2 0 14 11 1 12 8 5 14 2 0 18 0 1 5 1 0 21 1 0 13 1 0 18 chain 43195 chr15 101991189 + 50123155 50123773 LTR8 732 + 8 730 32653 19 2 0 75 0 1 86 0 1 135 61 167 156 2 0 82 chain 5436 chr15 101991189 + 50132281 50132350 L1PA7 6471 + 5629 5698 83523 69 chain 64733 chr15 101991189 + 50132350 50133119 L1PA7 6471 + 5700 6465 25252 647 0 1 43 1 0 67 4 0 7 chain 51314 chr15 101991189 + 50138970 50139602 L1PA8 5853 + 5227 5853 29120 288 0 1 48 1 0 45 2 0 70 1 0 14 1 0 44 7 6 17 1 0 93 chain 119683 chr15 101991189 + 50157737 50159111 SVA_D 2077 + 17 2069 15582 618 0 193 20 1 124 19 0 2 9 0 1 31 1 4 15 0 1 39 5 360 616 chain 393514 chr15 101991189 + 50169288 50176509 L1PB1 5432 + 59 5424 5255 168 0 1 23 0 1 438 2 1 4 0 1 60 0 1 35 0 1 203 0 2 13 3 8 245 28 21 110 1 0 7 2 0 5 28 11 504 1 5 295 0 1 213 1 0 59 9 0 92 8 5 96 0 1 97 1 16 16 1 0 7 0 1 7 2 1 53 1595 0 51 0 4 70 1 0 773 0 1 151 1 4 15 2 0 287 7 6 139 0 1 119 0 4 94 16 1 7 41 0 11 4 1 477 184 11 20 1 0 13 27 20 53 2 1 16 1 0 43 1 0 23 15 6 18 8 5 14 2 0 24 1 0 20 2 1 11 1 0 18 1 0 4 chain 135242 chr15 101991189 + 50172136 50173720 SVA_B 1603 + 7 1603 13516 14 24 32 296 2 1 502 1 0 12 1 0 35 1 18 15 0 1 43 1 0 480 8 1 140 3 0 6 chain 352433 chr15 101991189 + 50212104 50217222 L1PB1 5432 + 608 5408 5887 133 4 5 59 0 5 96 2 3 8 0 2 176 0 3 297 17 7 144 0 4 477 12 6 121 0 1 340 9 0 5 0 3 38 0 4 192 2 1 25 8 2 15 1 0 62 1 0 152 0 1 200 7 11 357 7 6 165 7 9 36 1 3 136 0 1 73 1 0 218 0 1 4 1 0 47 5 8 339 11 12 84 1 3 233 0 1 17 1 0 144 352 55 11 3 1 50 19 17 44 1 0 15 3 0 7 14 5 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 4 chain 8793 chr15 101991189 + 50221887 50221994 HY1 111 + 0 111 73003 45 0 4 62 chain 4071 chr15 101991189 + 50237251 50237300 HY4 93 + 23 72 90942 49 chain 3864 chr15 101991189 + 50268925 50268973 L1MA4 2864 + 2749 2798 92383 18 0 1 30 chain 5966 chr15 101991189 + 50322605 50322742 MER33 330 + 49 193 81204 33 43 47 49 1 4 11 chain 9213 chr15 101991189 + 50336704 50336824 Tigger2b_Pri 1066 + 137 257 72098 120 chain 22736 chr15 101991189 + 50344572 50344852 AluSp 311 + 14 296 52775 45 0 2 235 chain 17301 chr15 101991189 + 50384137 50386505 L1MC1 2226 + 1304 2044 59457 69 1018 95 82 156 91 44 99 93 38 799 167 12 2 0 49 chain 7890 chr15 101991189 + 50391579 50391787 MER21A 919 + 11 245 75150 70 23 43 20 72 78 23 chain 4629 chr15 101991189 + 50486778 50486845 L1PB1 5432 + 5328 5391 87649 4 1 0 14 2 0 24 1 0 21 chain 5952 chr15 101991189 + 50518124 50518207 L1MA4A 3247 + 2321 2403 81271 44 2 1 37 chain 14884 chr15 101991189 + 50522949 50523174 L1MA7 2200 + 123 348 62405 16 4 1 80 0 2 71 13 14 41 chain 3489 chr15 101991189 + 50564162 50564200 MER30 238 + 186 224 95321 38 chain 5403 chr15 101991189 + 50601764 50601836 MADE1 96 + 0 88 83690 33 1 17 38 chain 42836 chr15 101991189 + 50601997 50602486 L1PA6 6164 + 5619 6108 32867 489 chain 16190 chr15 101991189 + 50620191 50620424 MER30 238 + 0 238 60761 93 4 7 9 3 0 7 3 8 114 chain 24280 chr15 101991189 + 50668811 50669132 MER41-int 2638 + 1517 1834 50374 140 1 0 6 6 5 138 7 5 23 chain 27014 chr15 101991189 + 50688436 50688744 AluSq10 312 + 4 312 46250 308 chain 29217 chr15 101991189 + 50706109 50706414 AluYa8 305 + 0 305 43024 305 chain 11823 chr15 101991189 + 50736365 50736528 MER3 215 + 7 168 67162 28 1 0 121 1 0 12 chain 100950 chr15 101991189 + 50811793 50813094 LTR12C 1709 + 0 1709 18191 96 1 9 544 0 280 183 9 6 104 13 6 24 0 1 186 0 1 28 0 130 15 24 22 74 chain 161287 chr15 101991189 + 50842442 50846002 L1PB2 3958 + 1516 3838 11662 47 41 21 15 1 0 141 1 0 5 1 8 214 293 0 146 3 0 10 6 7 11 11 4 93 6 10 234 10 0 10 269 0 67 306 13 67 17 0 285 1 0 172 7 1 24 313 0 123 4 5 37 0 1 20 3 1 55 1 0 11 5 0 61 21 16 94 16 15 12 0 1 43 2 1 64 2 1 61 10 8 23 6 5 59 chain 26475 chr15 101991189 + 50875054 50875360 AluSp 311 + 5 311 47016 306 chain 92164 chr15 101991189 + 50893540 50894915 THE1B-int 1605 + 18 1274 19316 410 3 28 79 11 14 365 155 0 39 40 43 259 0 5 14 chain 4545 chr15 101991189 + 50894442 50894500 THE1B-int 1605 + 810 867 88090 4 1 0 53 chain 5343 chr15 101991189 + 50979809 50979876 MSTD 398 + 326 393 83988 67 chain 18845 chr15 101991189 + 51045556 51045777 MER4E 760 + 531 752 57719 221 chain 28650 chr15 101991189 + 51070764 51071076 AluYa5 310 + 0 307 43871 126 5 0 181 chain 51373 chr15 101991189 + 51118546 51119103 L1PA2 6032 + 5475 6031 29088 543 1 0 13 chain 91513 chr15 101991189 + 51150455 51151800 L1PA16 3655 + 2282 3624 19416 395 1 0 114 0 2 95 17 16 87 8 7 89 3 0 37 2 1 53 65 92 16 6 4 264 1 0 23 4 1 12 20 6 7 5 0 21 chain 506670 chr15 101991189 + 51173500 51179009 L1PA2 6032 + 0 6030 2906 96 0 524 868 3 0 4542 chain 4205 chr15 101991189 + 51202184 51202263 MER5A1 166 + 0 80 90090 20 10 17 9 6 0 34 chain 57187 chr15 101991189 + 51260586 51261349 LTR17 781 + 0 757 27200 59 1 0 86 12 11 23 1 0 54 1 0 16 7 6 72 1 0 430 chain 37620 chr15 101991189 + 51261949 51262420 MER9a3 513 + 0 494 36325 18 0 2 90 0 1 147 0 17 17 2 3 138 2 3 38 1 2 18 chain 29776 chr15 101991189 + 51282248 51282688 LTR14B 630 + 0 630 42271 18 2 1 36 0 149 70 0 28 98 20 30 110 11 14 43 0 1 32 chain 76451 chr15 101991189 + 51282896 51283982 HERVK14-int 1672 + 5 1665 22449 5 1 0 4 0 1 15 1 0 11 1 0 47 1 0 81 0 1 130 6 5 16 13 16 102 4 6 123 29 597 142 0 1 108 14 22 41 1 0 31 2 0 9 1 0 140 1 0 6 chain 25920 chr15 101991189 + 51285492 51285924 LTR14B 630 + 0 630 47833 56 0 149 69 25 53 73 8 18 29 0 8 71 32 35 69 chain 116177 chr15 101991189 + 51293534 51294998 SVA_D 2077 + 12 1739 16193 495 116 0 381 20 62 10 0 1 75 0 2 54 0 1 30 1 62 13 0 2 6 0 270 263 chain 3540 chr15 101991189 + 51294029 51294093 SVA_D 2077 + 817 884 94939 14 10 13 40 chain 13477 chr15 101991189 + 51347341 51347532 MER30 238 + 36 237 64341 71 4 0 8 2 19 65 3 0 38 chain 30497 chr15 101991189 + 51392193 51392654 MER1A 529 + 4 521 41570 14 20 27 97 13 19 34 12 54 150 0 3 58 3 1 60 chain 3907 chr15 101991189 + 51432111 51432155 L1M1 2793 + 2633 2677 92069 44 chain 18414 chr15 101991189 + 51508089 51508331 L1PA7 6471 + 6222 6464 58217 85 2 1 5 0 1 150 chain 253833 chr15 101991189 + 51509214 51512196 L1PA7 6471 + 3463 6465 8139 120 1 3 243 0 1 427 1 0 4 0 1 406 0 4 80 2 12 44 0 2 43 2 1 767 1 4 592 1 0 248 chain 94928 chr15 101991189 + 51530773 51532169 L1MA2 4263 + 2651 4047 18920 116 1 2 131 12 15 521 0 11 119 1 0 4 0 1 12 5 0 2 0 1 76 12 11 123 8 5 57 7 8 57 64 62 50 6 0 12 chain 400768 chr15 101991189 + 51568815 51573848 L1PA7 6471 + 5 6465 5142 198 2 1 96 40 210 66 0 1 139 5 118 156 11 9 4 0 1 257 15 55 349 1 0 102 2 3 395 0 3 117 6 11 275 0 2 11 2 0 56 0 1 280 1 2 317 4 3 337 0 2 1014 0 1094 20 7 5 170 1 0 339 2 4 50 0 3 6 1 0 28 1 0 150 chain 539559 chr15 101991189 + 51590946 51597082 L1PA4 6152 + 0 6152 1367 481 3 4 127 0 2 190 4 17 423 2 1 498 1 5 56 2 0 54 0 1 1324 1 0 82 0 2 249 0 1 423 0 1 72 12 5 575 0 2 1557 chain 33062 chr15 101991189 + 51611711 51612128 LTR12F 595 + 0 584 39465 92 1 168 324 chain 82901 chr15 101991189 + 51648150 51649173 L1PA6 6164 + 5201 6162 21044 51 0 1 400 71 0 132 1 0 312 0 9 56 chain 4199 chr15 101991189 + 51687174 51687220 MADE1 96 + 0 46 90127 46 chain 17251 chr15 101991189 + 51701881 51702091 L1PA5 6144 + 5930 6141 59523 75 5 6 130 chain 38166 chr15 101991189 + 51720624 51721140 LTR12F 595 + 0 595 35936 100 5 18 27 6 70 103 1 0 91 16 18 80 0 1 87 chain 13067 chr15 101991189 + 51777684 51777828 L1P1 4361 + 3670 3814 64991 144 chain 60875 chr15 101991189 + 51777828 51778496 L1PA3long 6157 + 5488 6157 26141 418 0 1 250 chain 479513 chr15 101991189 + 51786861 51793021 L1PA7 6471 + 5 6469 3646 66 0 1 114 26 25 29 48 48 41 40 233 83 13 13 60 8 18 57 1 76 177 1 22 167 0 4 158 0 3 147 0 11 78 33 4 116 0 7 6 11 4 335 0 14 8 0 2 271 2 0 228 1 2 517 0 1 398 0 4 458 18 20 633 0 4 142 5 1 623 5 0 109 3 2 75 2 1 328 13 12 346 0 1 150 0 1 10 chain 8622 chr15 101991189 + 51805609 51805760 L1MA3 4352 + 4179 4325 73402 19 0 4 33 4 0 25 2 0 22 2 1 5 1 0 29 1 0 8 chain 29020 chr15 101991189 + 51819796 51820243 L1M1 2793 + 2239 2679 43292 93 0 4 82 44 32 16 11 13 123 0 1 26 1 0 45 1 0 5 chain 8066 chr15 101991189 + 51884555 51884651 HY3 101 + 0 100 74709 40 0 4 56 chain 21375 chr15 101991189 + 51905754 51905980 AluYb8 318 + 92 318 54671 226 chain 4768 chr15 101991189 + 51907212 51907277 U6 107 + 13 79 86866 51 1 2 13 chain 14050 chr15 101991189 + 51915840 51916185 MLT1A 405 + 0 381 63520 21 10 0 9 4 0 70 109 149 38 0 10 25 13 13 46 chain 4230 chr15 101991189 + 51952281 51952326 MADE1 96 + 2 47 89941 45 chain 28115 chr15 101991189 + 51964218 51964555 L1PA6 6164 + 5832 6162 44688 23 9 0 296 0 2 9 chain 4850 chr15 101991189 + 52095901 52096186 L1MB7 1623 + 1355 1597 86422 19 7 13 42 190 141 27 chain 7961 chr15 101991189 + 52104897 52104996 L1PA8A 6298 + 6191 6291 74975 51 0 1 48 chain 8776 chr15 101991189 + 52162750 52162850 HY3 101 + 0 100 73044 100 chain 305027 chr15 101991189 + 52164687 52169041 L1PA11 4918 + 3 4092 6722 38 2 0 44 4 1 29 0 2 5 20 18 33 8 7 33 2 0 5 2 1 125 50 50 183 7 8 190 0 12 65 0 1 211 4 3 11 9 16 140 17 19 449 0 3 35 0 1 72 0 1 222 0 1 90 0 1 86 1 0 67 0 7 437 316 0 48 9 0 155 14 13 158 0 3 116 0 1 132 4 34 98 0 3 171 5 3 432 chain 18599 chr15 101991189 + 52186078 52186344 LTR56 451 + 111 379 57995 21 6 7 122 0 4 45 3 0 69 chain 128794 chr15 101991189 + 52285447 52286956 SVA_D 2077 + 0 2077 14178 13 1 0 4 3 0 10 3 0 6 8 13 118 0 15 287 0 76 145 0 40 181 1 0 8 1 38 36 0 53 44 0 351 633 1 0 6 chain 38793 chr15 101991189 + 52299670 52300234 LTR66 600 + 0 600 35506 23 0 11 135 9 11 13 0 1 35 7 8 78 11 13 85 12 8 65 0 15 30 0 1 28 1 8 32 chain 6519 chr15 101991189 + 52332999 52333202 MLT1A1 405 + 170 393 79278 13 2 4 13 102 120 73 chain 8769 chr15 101991189 + 52369669 52369783 MER85 139 + 14 139 73058 80 0 11 34 chain 62721 chr15 101991189 + 52438492 52439268 LTR17 781 + 0 781 25707 113 6 15 199 2 1 95 7 8 130 4 0 220 chain 30434 chr15 101991189 + 52447487 52447872 MSTA-int 1630 + 0 385 41646 385 chain 13627 chr15 101991189 + 52502854 52503174 L1MA4 2864 + 2524 2796 64125 135 2 1 15 3 0 10 120 77 4 1 0 30 chain 22673 chr15 101991189 + 52538469 52538835 THE1D 372 + 0 360 52863 15 0 2 24 13 1 15 5 6 86 0 3 7 3 0 16 17 19 146 3 4 16 chain 118180 chr15 101991189 + 52704122 52705514 L1PA6 6164 + 4769 6161 15854 64 0 1 263 9 9 300 1 4 441 1 0 305 3 0 5 chain 27042 chr15 101991189 + 52738557 52738972 LTR7 482 + 0 467 46208 54 43 61 109 8 40 25 6 7 69 1 2 100 chain 306508 chr15 101991189 + 52738989 52742992 HERVH-int 3825 + 0 3825 6689 328 9 8 157 0 2 35 1 0 11 1 0 4 0 1 24 1 0 15 84 29 4 1 0 13 3 0 13 0 39 14 1 0 14 21 0 68 1 0 129 5 8 307 15 0 208 9 0 40 1 0 140 0 10 36 0 1 27 4 31 299 0 10 949 166 1 40 1 0 400 0 5 34 0 1 370 chain 30558 chr15 101991189 + 52744783 52745197 LTR7 482 + 0 475 41517 54 33 61 109 0 1 33 0 1 6 0 31 179 chain 506666 chr15 101991189 + 52824190 52830132 L1PA6 6164 + 217 6156 2908 63 0 1 4 6 5 219 2 1 42 0 1 838 0 1 933 10 0 850 2 0 14 1 2 220 0 1 1253 0 1 15 1 0 4 0 1 628 1 5 9 1 2 826 chain 114199 chr15 101991189 + 52842013 52843644 L1PA5 6144 + 4575 5880 16520 408 327 0 261 0 1 635 chain 384694 chr15 101991189 + 52902961 52908197 L1PA2 6032 + 592 6026 5402 115 196 71 18 0 1 4 3 1 37 256 222 100 12 12 143 12 7 7 0 5 220 0 1 210 10 0 254 23 0 4 0 1 54 0 2 130 0 376 85 0 11 608 0 2 84 11 10 173 2 1 618 1 0 438 0 1 1408 chain 32437 chr15 101991189 + 52908197 52908577 L1PA6 6164 + 5782 6162 40003 380 chain 29718 chr15 101991189 + 52957430 52957823 L1PA8 5853 + 5465 5853 42349 99 1 0 44 2 0 74 8 6 6 0 1 38 8 8 22 1 0 90 chain 3655 chr15 101991189 + 52963697 52963744 MER5A1 166 + 94 141 93979 47 chain 3717 chr15 101991189 + 53031995 53032052 MER5A 189 + 52 111 93483 17 6 8 34 chain 257312 chr15 101991189 + 53051018 53054331 L1PA10 4194 + 806 4161 8049 163 0 2 133 0 3 74 0 2 103 11 8 153 1 2 6 1 0 206 4 6 142 14 13 187 5 7 312 1 0 162 1 0 4 0 1 81 13 47 26 0 1 961 1 7 139 1 0 111 0 1 118 1 0 129 5 2 32 1 0 11 chain 527909 chr15 101991189 + 53183248 53189202 L1PA5 6144 + 3 6135 1920 1852 0 165 1130 2 0 1191 0 4 513 1 0 289 0 1 912 0 11 64 chain 233421 chr15 101991189 + 53276415 53279499 L1PA11 4918 + 1421 4495 8653 189 0 3 90 0 1 59 0 1 51 3 0 281 0 1 105 2 3 37 1 0 93 2 1 204 7 0 277 10 9 715 0 1 154 16 11 32 0 1 499 19 19 69 1 0 7 4 0 59 21 17 4 0 1 54 0 8 11 1 0 7 chain 6615 chr15 101991189 + 53284345 53284484 MIR 256 + 52 192 78918 12 2 0 5 0 2 45 36 37 39 chain 4873 chr15 101991189 + 53349675 53349738 L1MC3 1789 + 1257 1317 86305 54 3 0 6 chain 5336 chr15 101991189 + 53404076 53404298 MER21C 908 + 599 813 84035 44 141 133 37 chain 9830 chr15 101991189 + 53478803 53479006 Tigger3a 397 + 43 255 70760 7 2 0 38 64 74 82 0 1 10 chain 16338 chr15 101991189 + 53484665 53484881 MER107 203 + 0 203 60587 179 4 1 12 10 0 11 chain 95106 chr15 101991189 + 53496343 53497368 L1PA2 6032 + 3459 4484 18895 1025 chain 30729 chr15 101991189 + 53502891 53503312 L1PA8 5853 + 5438 5853 41366 126 1 0 44 2 0 45 6 7 18 2 1 8 4 3 50 2 1 19 1 0 93 chain 553413 chr15 101991189 + 53540633 53546677 L1PA2 6032 + 3 6028 522 203 5 6 2565 0 1 4 1 0 298 0 1 142 20 3 2795 4 0 7 chain 12045 chr15 101991189 + 53570400 53570581 L1PA17 2846 + 2514 2693 66768 19 1 0 67 1 0 22 0 2 12 1 0 14 2 1 42 chain 73844 chr15 101991189 + 53620475 53621430 L1PB1 5432 + 4144 5103 23135 314 8 7 161 3 0 81 0 1 89 1 9 102 1 0 163 4 0 8 0 4 20 chain 540082 chr15 101991189 + 53684199 53690221 L1PA3long 6157 + 1 6152 1336 71 0 1 78 1 2 426 1 0 131 0 1 31 1 0 25 11 139 807 0 1 2857 1 0 1581 chain 4179 chr15 101991189 + 53804230 53804284 MLT1D 503 + 432 486 90265 54 chain 7431 chr15 101991189 + 53804301 53804441 L1MC3 1789 + 1260 1382 76303 48 3 0 9 28 14 46 1 0 5 chain 122736 chr15 101991189 + 53805745 53807092 L1PA3long 6157 + 4810 6157 15073 1347 chain 4732 chr15 101991189 + 53809702 53809778 MADE1 96 + 2 96 87067 28 5 6 13 0 17 30 chain 44634 chr15 101991189 + 53810294 53810806 LTR6B 557 + 2 557 31774 34 0 46 157 2 0 162 1 0 156 chain 3357 chr15 101991189 + 53868273 53868312 MamRep1527 640 + 222 261 96526 39 chain 15983 chr15 101991189 + 54032846 54033132 L1PB1 5432 + 5167 5427 61044 53 2 1 16 1 0 44 1 0 15 14 1 30 7 4 15 2 0 27 1 0 18 1 0 13 1 0 18 2 0 5 chain 362651 chr15 101991189 + 54056066 54060163 L1PA4 6152 + 1092 5186 5774 2423 0 1 582 6 5 140 4 3 402 2 0 538 chain 94977 chr15 101991189 + 54126549 54127702 L1PA7 6471 + 5300 6456 18913 321 0 3 79 0 1 598 7 6 148 chain 13343 chr15 101991189 + 54204008 54204279 L1PB1 5432 + 5168 5423 64559 52 2 1 10 7 6 44 1 0 21 15 7 17 3 1 5 1 0 14 2 0 24 1 0 7 1 4 11 1 0 12 1 0 19 chain 156104 chr15 101991189 + 54218898 54220606 L1PA3long 6157 + 4445 6157 11995 865 0 4 843 chain 6026 chr15 101991189 + 54304567 54304651 MER67D 511 + 66 150 80984 13 0 1 5 2 1 64 chain 13701 chr15 101991189 + 54371744 54372112 L1MA8 2339 + 1935 2265 64013 23 2 0 51 1 0 62 122 95 28 8 3 22 16 14 23 1 0 9 chain 266310 chr15 101991189 + 54432411 54435744 L1PA7 6471 + 3119 6466 7795 244 0 1 133 1 0 53 0 5 180 6 7 66 0 8 118 0 2 15 0 1 607 5 6 14 0 1 339 0 1 34 1 0 24 5 0 41 0 1 60 0 1 82 0 1 14 8 0 7 4 13 225 2 1 4 0 1 191 0 4 448 0 2 46 0 1 188 6 0 151 5 0 6 chain 52664 chr15 101991189 + 54435761 54436503 L1PA8 5853 + 4878 5534 28678 128 1 0 6 9 3 292 77 1 184 3 0 42 chain 30916 chr15 101991189 + 54496384 54496960 L1PB1 5432 + 4902 5423 41205 89 5 6 106 13 0 13 9 0 20 1 0 8 1 0 14 5 1 9 2 0 52 2 1 16 1 0 18 10 8 17 1 0 16 9 1 5 3 0 24 29 24 20 1 0 22 1 0 12 1 0 14 2 0 5 chain 259596 chr15 101991189 + 54543256 54546468 L1PA7 6471 + 3266 6459 7983 145 1 2 24 0 3 105 1 0 582 5 6 63 7 6 4 0 1 62 2 0 1294 0 6 12 28 2 38 1 10 14 0 1 52 0 2 31 18 1 49 0 3 260 0 1 414 chain 34610 chr15 101991189 + 54557875 54558262 L1PA3long 6157 + 5770 6157 38281 387 chain 4730 chr15 101991189 + 54573715 54573810 MER20 218 + 64 158 87078 13 20 17 14 2 4 46 chain 468455 chr15 101991189 + 54698824 54704169 L1PA4 6152 + 6 5353 3892 187 0 2 247 26 20 111 0 3 1079 2 1 54 2 0 675 0 3 1899 0 2 675 0 1 388 chain 29355 chr15 101991189 + 54722634 54723046 MER11A 1151 + 705 1151 42801 117 0 50 12 18 0 36 0 1 60 6 7 163 chain 9211 chr15 101991189 + 54746274 54746696 L1MA6 2487 + 2054 2402 72100 13 5 2 51 11 10 57 231 161 14 0 4 13 7 4 14 1 0 5 chain 519009 chr15 101991189 + 54749274 54755415 L1PA5 6144 + 0 6141 2318 42 4 5 78 1 15 14 6 5 34 7 8 968 9 0 540 2 0 484 0 2 50 0 2 62 5 0 129 2 0 726 2 0 121 1 0 160 0 1 238 2 0 542 7 12 1419 0 1 90 3 0 393 chain 114256 chr15 101991189 + 54783616 54785168 L1P3 4156 + 2551 4139 16510 85 0 2 86 0 1 6 2 1 146 5 9 36 0 13 55 0 2 501 2 0 25 0 2 32 0 1 18 0 1 29 1 0 51 0 5 13 1 2 211 6 16 97 1 0 8 1 0 6 0 2 92 1 0 9 2 1 24 chain 6964 chr15 101991189 + 54820631 54820717 MLT2D 439 + 2 88 77733 86 chain 506275 chr15 101991189 + 54850735 54857511 L1PA7 6471 + 0 6403 2922 614 9 7 281 39 39 105 3 4 163 8 12 747 1 6 56 1 2 127 0 4 473 5 6 237 11 16 104 7 0 17 23 0 471 2 1 235 0 1 382 87 48 42 0 1 170 0 1 21 3 8 589 2 3 97 337 1 531 1 3 511 0 3 264 chain 34757 chr15 101991189 + 54863084 54863593 L1PBa1 4058 + 10 512 38182 27 2 1 9 13 10 112 15 14 230 17 15 84 chain 547377 chr15 101991189 + 54871705 54877844 L1PA3long 6157 + 6 6157 900 21 0 13 8 14 1 169 0 1 20 0 1 1613 7 12 2070 1 2 1373 0 4 843 chain 30141 chr15 101991189 + 54886166 54886498 L1PA5 6144 + 5800 6132 41894 332 chain 233764 chr15 101991189 + 54888011 54891167 HERVK22-int 3844 + 1 3844 8641 534 13 5 31 0 3 268 0 5 507 0 1 19 2 1 421 0 1 105 2 1 330 13 11 6 0 5 485 5 53 14 62 67 26 0 1 35 94 726 82 12 11 69 1 0 20 chain 50297 chr15 101991189 + 54900486 54901159 L1PA8 5853 + 5175 5853 29453 165 0 11 213 1 0 37 12 10 64 6 5 60 2 1 19 1 0 93 chain 449567 chr15 101991189 + 54944770 54950210 L1PA6 6164 + 711 6160 4399 95 17 0 155 1 0 95 0 1 288 2 6 17 64 72 892 5 6 49 0 2 796 10 6 88 0 2 618 0 1 65 8 11 386 0 4 648 0 1 217 0 1 4 1 0 78 1 0 20 0 1 77 0 3 599 4 5 140 chain 13415 chr15 101991189 + 54969257 54969412 L1PA7 6471 + 5856 6012 64446 7 0 1 148 chain 23313 chr15 101991189 + 54969413 54969709 L1PA7 6471 + 6012 6313 51910 255 10 15 31 chain 11476 chr15 101991189 + 54969723 54969856 L1PA7 6471 + 6328 6461 67779 133 chain 5081 chr15 101991189 + 54978621 54978744 L1PB1 5432 + 5315 5427 85242 12 8 5 14 2 0 24 1 0 22 1 0 7 7 6 10 1 0 7 2 0 5 chain 269796 chr15 101991189 + 54993290 54996973 L1PA8 5853 + 2187 5853 7711 294 0 4 37 5 0 360 3 0 37 11 7 76 48 70 208 2 3 23 12 13 28 1 5 26 51 20 128 3 4 325 1 7 159 9 12 162 9 1 77 4 0 52 0 1 73 0 1 84 0 1 4 1 0 518 0 2 555 1 0 46 2 0 68 2 1 20 7 5 40 19 17 92 chain 5469 chr15 101991189 + 55003515 55003603 MLT1C 463 + 344 431 83353 45 11 10 32 chain 11342 chr15 101991189 + 55057380 55057751 MLT1D 503 + 77 503 68016 37 186 219 50 4 23 19 5 8 70 chain 547937 chr15 101991189 + 55063993 55069991 L1PA2 6032 + 1 6029 868 628 0 1 2373 0 21 122 0 3 31 1 2 500 0 1 543 0 4 1026 1 0 773 chain 244088 chr15 101991189 + 55076888 55081014 L1PB1 5432 + 2031 5422 8374 40 3 2 113 9 5 124 1 0 33 4 0 152 2 0 19 0 1 85 116 24 207 7 0 6 8 7 221 0 1 575 0 3 53 0 1 7 1 0 20 8 11 117 0 23 132 0 10 150 0 1 53 0 1 68 1 0 331 3 0 48 632 0 427 0 1 14 11 10 7 1 0 13 16 11 11 2 0 51 2 1 11 6 5 44 1 0 11 1 0 4 3 0 7 13 5 19 8 5 14 2 0 45 2 1 9 1 0 21 chain 7312 chr15 101991189 + 55077490 55077582 L1PB1 5432 + 4231 4322 76625 4 1 0 87 chain 54433 chr15 101991189 + 55079618 55080231 L1PA3long 6157 + 5544 6157 28073 153 2 1 422 0 1 36 chain 47017 chr15 101991189 + 55084683 55085306 THE1B-int 1605 + 962 1600 30651 210 3 6 66 6 12 43 3 0 10 1 8 5 0 2 276 chain 25001 chr15 101991189 + 55085318 55085675 THE1B 368 + 7 368 49279 162 1 0 20 3 7 4 1 0 10 0 4 16 1 0 9 13 12 117 chain 53293 chr15 101991189 + 55097494 55098098 L1PA5 6144 + 5532 6135 28468 427 1 0 176 chain 51480 chr15 101991189 + 55117478 55118038 L1PA3long 6157 + 5597 6157 29055 560 chain 20027 chr15 101991189 + 55127472 55127713 L1PA7 6471 + 6229 6470 56349 241 chain 484372 chr15 101991189 + 55135359 55141965 L1PA7 6471 + 450 6470 3543 614 1 0 185 0 6 164 0 1 166 0 4 103 1 0 79 16 17 28 1 0 357 0 2 346 0 1 78 6 9 26 3 4 161 321 0 63 0 2 230 0 4 397 2 0 713 0 15 731 0 5 203 3 0 228 7 1 114 0 3 104 0 1 95 3 0 99 319 14 104 11 14 71 0 1 45 3 2 7 0 1 93 2 7 130 26 25 147 chain 532427 chr15 101991189 + 55143186 55149313 L1PA5 6144 + 3 6144 1734 156 5 1 275 0 1 713 0 3 337 6 1 70 0 1 309 0 5 437 0 1 863 2 0 26 1 0 11 0 1 389 0 1 63 0 2 703 0 6 43 0 3 204 1 0 205 0 3 1116 0 1 6 6 5 180 chain 7716 chr15 101991189 + 55152391 55152530 MER20 218 + 63 207 75577 14 9 12 49 18 20 49 chain 21366 chr15 101991189 + 55155610 55155867 L1PA15 4387 + 2907 3167 54681 78 0 3 179 chain 45400 chr15 101991189 + 55162198 55162717 L1PA4 6152 + 5615 6134 31365 293 1 0 130 0 1 95 chain 11034 chr15 101991189 + 55189563 55189720 MER30 238 + 68 238 68504 40 4 0 9 3 19 86 0 1 15 chain 21772 chr15 101991189 + 55235189 55235448 AluSp 311 + 24 282 54136 108 1 0 150 chain 2812 chr15 101991189 + 55235701 55235739 L1PB1 5432 + 5033 5071 101593 38 chain 16782 chr15 101991189 + 55235814 55236159 L1PB1 5432 + 5116 5427 60055 22 1 0 6 1 0 14 7 3 7 2 0 52 2 1 16 10 9 35 1 0 15 25 12 18 9 6 14 2 0 24 1 0 23 1 0 11 1 0 18 2 0 5 chain 21947 chr15 101991189 + 55261136 55261411 AluSg4 309 + 20 295 53906 89 2 1 12 0 1 172 chain 5548 chr15 101991189 + 55286132 55286196 5S 121 + 26 90 83040 64 chain 153251 chr15 101991189 + 55302227 55304481 SVA_F 1814 + 126 1813 12162 88 1 0 647 578 0 26 0 1 59 0 15 39 1 0 10 1 0 166 1 0 10 1 0 626 chain 34934 chr15 101991189 + 55302983 55303479 SVA_F 1814 + 880 1293 38067 34 49 0 34 3 18 308 49 0 19 chain 3604 chr15 101991189 + 55303479 55303528 SVA_F 1814 + 1166 1265 89239 3 3 53 43 chain 153862 chr15 101991189 + 55314340 55316588 L1PA8 5853 + 3755 5847 12119 27 1 6 57 0 1 15 0 1 48 0 4 131 14 18 183 0 2 273 1 3 285 1 0 45 0 5 150 0 2 261 0 1 119 305 136 36 1 0 17 4 0 29 2 0 68 2 1 12 4 0 49 2 1 19 1 0 20 0 1 66 chain 22776 chr15 101991189 + 55321900 55322169 AluSp 311 + 8 277 52709 269 chain 12770 chr15 101991189 + 55335089 55335264 Tigger3a 397 + 221 397 65487 53 14 15 108 chain 3793 chr15 101991189 + 55363602 55363645 5S 121 + 47 90 92903 43 chain 23120 chr15 101991189 + 55393716 55394067 MER51B 395 + 11 395 52181 23 13 32 34 0 6 40 0 1 98 16 15 40 1 9 86 chain 35441 chr15 101991189 + 55394656 55395152 LOR1a 498 + 10 498 37757 35 1 2 128 4 0 33 5 12 129 17 2 75 0 3 69 chain 24409 chr15 101991189 + 55433328 55433644 AluY 311 + 0 301 50155 51 16 0 81 0 1 168 chain 8944 chr15 101991189 + 55434555 55434660 BC200 147 + 0 105 72681 105 chain 136380 chr15 101991189 + 55460001 55464682 L1PB1 5432 + 1652 4693 13406 19 0 5 8 5 0 110 344 8 44 0 4 190 2 0 44 2445 1156 141 3 2 5 0 1 220 1 0 119 3 0 6 16 0 41 0 1 382 6 10 225 0 1 232 3 0 67 chain 76192 chr15 101991189 + 55479246 55480341 MER11A 1151 + 0 1151 22515 69 0 1 15 0 91 40 0 3 11 1 0 64 4 0 130 27 28 86 0 1 51 7 0 245 25 1 11 8 15 24 25 7 27 0 1 21 0 5 4 1 0 32 0 1 167 chain 47491 chr15 101991189 + 55487091 55487754 LTR12 884 + 0 861 30483 25 1 0 30 1 41 154 25 0 13 0 25 31 0 25 34 2 0 295 12 148 40 chain 26398 chr15 101991189 + 55498623 55498939 AluSp 311 + 0 310 47122 179 6 0 131 chain 276123 chr15 101991189 + 55502660 55505918 L1PA6 6164 + 2884 6156 7545 11 0 3 757 0 1 709 0 4 557 0 1 391 0 4 339 5 7 334 9 8 146 chain 25352 chr15 101991189 + 55522273 55522631 THE1B 368 + 0 368 48702 44 0 15 104 12 11 18 5 2 99 1 0 75 chain 27750 chr15 101991189 + 55528014 55528452 L1PA15 4387 + 3936 4356 45250 168 1 0 27 1 0 53 2 1 22 15 10 39 18 15 43 3 1 14 5 0 27 chain 7443 chr15 101991189 + 55529882 55529967 THE1A 353 + 268 353 76263 85 chain 14736 chr15 101991189 + 55555521 55555680 L1PA4 6152 + 5989 6148 62623 159 chain 188875 chr15 101991189 + 55555689 55558564 L1PA10 4194 + 1592 4150 10172 209 0 15 4 0 9 344 0 2 47 0 4 138 0 3 263 28 26 16 7 11 7 346 0 667 15 16 188 5 0 129 4 3 206 0 3 180 5 4 30 7 4 30 chain 19543 chr15 101991189 + 55559654 55559923 L1PA10 4194 + 3051 3324 56969 201 11 10 42 0 5 15 chain 7518 chr15 101991189 + 55559923 55560068 L1PA10 4194 + 3325 3471 76084 59 0 1 6 10 12 43 10 8 17 chain 15722 chr15 101991189 + 55560072 55560266 L1PA10 4194 + 3474 3668 61383 194 chain 13894 chr15 101991189 + 55560266 55560437 L1PA10 4194 + 3671 3842 63746 171 chain 20081 chr15 101991189 + 55560438 55560678 L1PA10 4194 + 3845 4085 56280 240 chain 27427 chr15 101991189 + 55605395 55605753 L1P3 4156 + 3779 4136 45661 261 2 4 63 2 0 7 2 1 21 chain 7620 chr15 101991189 + 55681955 55682051 MER2 342 + 136 234 75822 38 0 2 58 chain 11380 chr15 101991189 + 55689497 55689630 L1PA6 6164 + 6016 6147 67951 64 1 0 7 1 0 60 chain 9689 chr15 101991189 + 55717813 55717920 LTR7Y 441 + 334 441 71077 107 chain 41327 chr15 101991189 + 55717921 55718419 HERVH-int 3825 + 1 1176 33774 156 2 1 44 0 678 296 chain 12440 chr15 101991189 + 55718449 55718618 LTR7Y 441 + 232 399 66082 33 4 0 78 0 2 54 chain 20612 chr15 101991189 + 55793668 55793959 THE1B-int 1605 + 0 292 55617 25 3 0 5 12 15 52 4 5 190 chain 254971 chr15 101991189 + 55805901 55808772 L1PA5 6144 + 3257 6129 8113 658 1 2 484 0 1 892 1 0 835 chain 75599 chr15 101991189 + 55905951 55906792 L1PA5 6144 + 5303 6144 22693 841 chain 13588 chr15 101991189 + 55932029 55932197 THE1C 375 + 1 169 64188 168 chain 128399 chr15 101991189 + 55932197 55933689 L1PA5 6144 + 4661 6138 14234 633 3 0 61 0 2 52 9 0 411 7 8 170 6 0 140 chain 485478 chr15 101991189 + 55944021 55949961 L1PA5 6144 + 5 6144 3521 103 12 26 82 1 0 307 1 2 137 7 8 122 8 25 7 17 0 128 25 0 213 13 4 329 0 4 418 0 6 338 4 1 49 0 1 1011 7 0 231 0 213 64 0 1 472 0 1 148 2 0 835 0 4 849 chain 48846 chr15 101991189 + 55957555 55958126 L1PA6 6164 + 5588 6162 29995 367 0 3 57 2 3 4 1 0 140 chain 40125 chr15 101991189 + 55960170 55960707 MLT2A2 560 + 0 552 34577 193 2 5 204 0 11 77 17 16 7 0 2 37 chain 43409 chr15 101991189 + 55988017 55988485 L1HS 6032 + 5562 6030 32497 468 chain 7892 chr15 101991189 + 56001793 56001888 MSTD 398 + 0 95 75143 95 chain 26239 chr15 101991189 + 56010484 56010813 THE1C 375 + 0 331 47362 259 0 2 70 chain 86187 chr15 101991189 + 56024275 56025328 MER11B 1079 + 2 1079 20393 223 0 5 86 1 18 436 0 2 186 0 1 98 12 11 11 chain 29512 chr15 101991189 + 56037942 56038368 MER57A1 433 + 0 433 42592 279 47 50 57 0 4 43 chain 4210 chr15 101991189 + 56043762 56043814 MER51A 677 + 206 258 90062 52 chain 26537 chr15 101991189 + 56057645 56057942 AluYk4 311 + 0 297 46917 297 chain 49161 chr15 101991189 + 56083432 56084012 L1PA5 6144 + 5565 6141 29883 570 4 0 6 chain 42883 chr15 101991189 + 56107829 56108385 L1P3 4156 + 3598 4137 32844 17 21 0 34 0 1 355 1 7 95 2 0 7 2 1 22 chain 172827 chr15 101991189 + 56109070 56111672 SVA_D 2077 + 59 2077 10960 665 0 3 34 3 0 89 351 0 29 1 0 24 4 0 17 2 0 27 64 0 31 0 5 32 78 0 22 0 1 173 50 0 124 1 0 4 37 10 8 1 0 31 0 1 4 10 8 665 10 0 11 chain 3317 chr15 101991189 + 56109889 56109935 SVA_D 2077 + 1061 1107 48441 46 chain 2649 chr15 101991189 + 56109950 56110007 SVA_D 2077 + 890 943 29708 18 2 0 8 3 1 26 chain 9346 chr15 101991189 + 56110008 56110212 SVA_D 2077 + 1030 1159 30843 6 35 10 6 1 0 19 49 0 88 chain 2524 chr15 101991189 + 56110014 56110049 SVA_D 2077 + 1264 1299 48441 35 chain 3625 chr15 101991189 + 56110443 56110521 SVA_D 2077 + 1115 1193 29708 78 chain 2324 chr15 101991189 + 56110716 56110766 SVA_D 2077 + 1338 1436 29708 9 1 0 5 0 49 35 chain 1695 chr15 101991189 + 56110895 56110932 SVA_D 2077 + 1487 1524 30843 37 chain 4293 chr15 101991189 + 56116650 56116706 L1ME3A 1206 + 619 674 89552 9 1 0 46 chain 488489 chr15 101991189 + 56149422 56155763 L1PA7 6471 + 17 6457 3456 222 28 36 128 4 0 9 9 0 61 1 0 104 3 0 5 14 0 9 36 35 117 7 12 58 0 65 11 3 7 6 4 0 268 7 103 432 1 4 44 2 0 6 0 5 132 0 3 693 0 1 47 0 1 56 1 3 189 0 4 371 2 3 230 5 0 37 9 4 6 0 4 64 1 0 568 85 0 72 0 3 223 1 2 189 0 8 87 1 4 315 0 1 386 1 0 115 0 3 26 0 2 92 1 2 233 0 1 4 0 3 18 0 8 475 2 0 5 chain 25849 chr15 101991189 + 56181843 56182289 MER1A 529 + 45 529 47940 35 10 55 61 4 2 90 20 17 22 1 4 133 38 33 32 chain 42306 chr15 101991189 + 56203476 56204014 MER41A 554 + 13 554 33186 74 2 3 234 0 1 205 0 1 23 chain 4453 chr15 101991189 + 56228440 56228494 L1MCb 1641 + 972 1028 88589 35 0 2 19 chain 81691 chr15 101991189 + 56331740 56332630 L1PA2 6032 + 5139 6030 21301 556 0 1 334 chain 45960 chr15 101991189 + 56375723 56376231 L1PA3long 6157 + 5649 6157 31072 508 chain 20439 chr15 101991189 + 56396604 56396927 THE1B 368 + 0 353 55843 40 0 15 120 1 0 9 52 67 88 0 1 13 chain 4344 chr15 101991189 + 56397587 56397634 THE1B-int 1605 + 1545 1592 89221 47 chain 23010 chr15 101991189 + 56397646 56397980 THE1B 368 + 2 368 52344 42 0 15 113 2 1 24 28 46 125 chain 512066 chr15 101991189 + 56398989 56405142 L1PA6 6164 + 0 6162 2663 567 1 0 425 0 1 152 1 3 38 0 3 21 4 1 642 0 5 102 1 0 374 15 1 61 1 5 181 5 9 90 0 5 24 0 3 464 8 8 4 0 1 36 8 3 471 0 4 124 5 4 536 0 4 729 2 0 172 3 1 41 1 4 235 2 3 111 0 1 310 0 1 167 1 0 5 3 0 10 chain 15265 chr15 101991189 + 56433208 56433420 L1PA8 5853 + 5645 5847 61957 23 3 0 11 1 0 14 1 0 7 2 0 7 1 0 33 2 1 19 1 0 87 chain 149682 chr15 101991189 + 56436062 56437827 L1P1 4361 + 2587 4341 12372 726 9 13 316 24 0 9 0 13 12 1 0 474 1 0 155 1 0 23 2 1 12 chain 18848 chr15 101991189 + 56441473 56441712 L1PA15 4387 + 3585 3822 57718 228 2 0 9 chain 13659 chr15 101991189 + 56486006 56486172 THE1C-int 1605 + 1429 1594 64070 13 1 0 152 chain 89253 chr15 101991189 + 56508127 56509509 L1PA13 3608 + 90 1449 19813 18 5 3 27 3 0 26 2 1 12 3 0 24 28 17 73 2 0 120 5 4 13 1 0 16 2 1 16 6 2 18 1 0 9 13 11 15 2 0 16 1 0 91 9 7 77 9 5 151 0 2 140 1 0 101 2 1 6 1 0 123 1 2 67 0 13 55 1 5 23 1 2 46 chain 25722 chr15 101991189 + 56513600 56513995 L1P1 4361 + 1468 2165 48140 205 90 392 100 chain 85332 chr15 101991189 + 56540200 56541420 SVA_D 2077 + 63 2059 20559 14 8 13 45 12 1 69 4 6 324 2 0 9 0 80 136 0 80 42 38 674 17 16 0 37 8 7 8 0 1 71 1 3 359 chain 65049 chr15 101991189 + 56541499 56542219 L1PA4 6152 + 5163 5881 25178 138 2 0 580 chain 513887 chr15 101991189 + 56561419 56567575 L1PA6 6164 + 0 6162 2577 73 6 6 315 0 1 620 0 1 222 1 0 46 0 16 610 0 1 271 1 0 27 1 5 111 14 0 230 0 1 20 0 1 101 0 5 455 1 4 942 0 1 559 12 0 176 0 1 72 1 0 1115 0 1 138 1 0 15 chain 328009 chr15 101991189 + 56569200 56576602 L1PB1 5432 + 108 5420 6251 336 0 3 105 5 7 32 0 4 167 0 2 203 7 6 72 0 2 112 0 4 40 0 2 104 1 0 87 13 0 258 0 3 180 3 0 7 0 4 139 12 15 161 4 6 42 0 1 46 27 28 208 6 0 29 1 2 71 1 0 217 3 5 7 0 1 7 6 9 38 6 9 42 0 4 133 1 0 56 0 1 366 1 2 49 7 8 29 1 0 4 0 1 104 0 1 13 0 1 26 2 3 24 0 7 167 0 3 49 1 0 7 1 2 122 0 2 87 3 5 156 2913 807 50 2 1 16 1 0 43 1 0 16 3 0 6 20 10 14 2 0 6 1 0 14 2 0 24 1 0 21 1 0 13 1 0 12 1 0 4 chain 38309 chr15 101991189 + 56611665 56612203 MER41C 542 + 0 542 35836 46 7 8 169 19 22 68 0 2 20 12 10 197 chain 8215 chr15 101991189 + 56637753 56638139 Charlie1a 1436 + 177 598 74367 13 6 9 17 2 0 19 72 95 29 4 0 14 143 162 12 4 0 51 chain 128102 chr15 101991189 + 56708590 56710011 L1PA5 6144 + 4715 6137 14266 1111 0 1 310 chain 6351 chr15 101991189 + 56715938 56716010 MER2 342 + 143 215 79831 72 chain 2811 chr15 101991189 + 56723310 56723340 L1MB8 1703 + 1433 1463 101597 30 chain 4431 chr15 101991189 + 56780220 56780338 LTR12C 1709 + 795 877 88724 38 53 17 27 chain 115644 chr15 101991189 + 56788667 56790093 L1PA8 5853 + 4426 5853 16297 212 0 7 365 9 7 11 2 3 533 1 0 115 1 0 8 1 5 7 5 0 41 2 1 19 3 2 91 chain 83623 chr15 101991189 + 56792602 56793757 L1PA16 3655 + 1398 2552 20887 77 5 11 147 5 3 159 1 0 73 1 0 133 9 3 387 0 2 50 37 38 71 chain 22942 chr15 101991189 + 56810661 56811005 THE1B 368 + 0 368 52456 40 2 17 119 1 0 16 41 51 125 chain 14721 chr15 101991189 + 56849253 56849493 MER30 238 + 0 238 62642 15 16 15 35 4 3 5 0 1 24 0 2 8 8 5 125 chain 29733 chr15 101991189 + 56861963 56862481 L1MA2 4263 + 3621 4099 42325 41 1 0 41 36 0 91 31 28 116 30 37 83 13 6 35 chain 18128 chr15 101991189 + 56897013 56897355 THE1B 368 + 0 342 58537 64 18 14 29 13 14 48 1 0 11 0 1 4 1 0 13 0 3 8 24 27 4 1 0 66 7 6 30 chain 144132 chr15 101991189 + 56904054 56905679 L1PA5 6144 + 4519 6144 12765 1469 1 0 6 0 1 149 chain 7689 chr15 101991189 + 56915886 56916011 MSTD 398 + 0 128 75652 88 19 22 18 chain 6109 chr15 101991189 + 56917332 56917411 MER2 342 + 136 215 80696 79 chain 106906 chr15 101991189 + 56954265 56955556 L1PA6 6164 + 4849 6159 17445 133 1 0 327 4 7 115 1 19 543 2 1 165 chain 2775 chr15 101991189 + 57316155 57316202 L1MC1 2226 + 2135 2181 101788 12 6 5 29 chain 7196 chr15 101991189 + 57318712 57318810 MLT1A0 366 + 253 350 76956 81 1 0 16 chain 13449 chr15 101991189 + 57431623 57431846 MER30 238 + 0 236 64389 59 0 1 47 4 0 10 4 23 13 6 0 7 1 7 25 3 0 44 chain 3079 chr15 101991189 + 57508779 57508819 MER5A1 166 + 34 71 98994 6 3 0 31 chain 5070 chr15 101991189 + 57594618 57594710 Tigger3c 601 + 478 569 85312 50 24 23 18 chain 38434 chr15 101991189 + 57723879 57724431 Tigger1 2417 + 491 1048 35766 35 0 1 8 5 6 58 2 1 155 13 15 92 1 0 94 6 9 83 chain 16736 chr15 101991189 + 57739274 57739496 L1PA8 5853 + 5636 5853 60115 46 1 0 11 2 1 13 1 0 33 2 1 19 1 0 93 chain 12574 chr15 101991189 + 57822902 57823103 MER2 342 + 146 342 65845 69 14 8 72 6 7 40 chain 60961 chr15 101991189 + 57997981 57998779 L1PA10 4194 + 3371 4161 26118 41 8 6 26 1 0 141 7 5 272 1 0 244 1 3 7 3 0 34 1 0 11 chain 2233 chr15 101991189 + 58018074 58018596 L1MC4a 1092 + 100 597 105138 22 472 447 28 chain 5756 chr15 101991189 + 58101058 58101129 L1PA16 3655 + 3506 3578 82104 19 0 1 52 chain 559710 chr15 101991189 + 58125731 58131761 L1PA2 6032 + 0 6032 178 219 0 1 5666 0 1 145 chain 497757 chr15 101991189 + 58193368 58199280 L1PA5 6144 + 0 5872 3213 478 40 1 242 44 43 398 16 7 842 0 1 6 1 0 361 0 4 1126 2 1 413 1 0 829 3 9 358 0 1 101 0 1 72 1 0 578 chain 268495 chr15 101991189 + 58207346 58210595 HERVL-int 5654 + 0 5654 7748 175 0 1438 106 0 1 450 0 1 784 0 2 214 0 2 282 0 1 178 1 960 624 0 1 121 2 0 24 0 3 92 1 0 195 chain 27270 chr15 101991189 + 58210595 58211525 MLT2A1 477 + 0 470 45867 126 2 3 42 11 9 24 0 1 144 533 77 11 9 5 28 chain 37544 chr15 101991189 + 58237329 58238142 MER9a3 513 + 15 513 36375 85 10 11 191 320 0 115 0 1 16 4 5 15 0 2 57 chain 5218 chr15 101991189 + 58270014 58270180 LTR41B 718 + 5 177 84594 27 80 87 39 2 1 18 chain 8814 chr15 101991189 + 58336274 58336422 Tigger1 2417 + 602 753 72969 37 28 31 83 chain 22127 chr15 101991189 + 58340632 58340900 L1PA6 6164 + 5897 6162 53659 252 3 0 13 chain 66314 chr15 101991189 + 58347335 58348093 L1PA5 6144 + 5382 6144 24869 611 1 3 134 1 3 11 chain 526338 chr15 101991189 + 58362600 58369059 L1PA7 6471 + 0 6470 1984 415 1 0 4 0 1 97 7 6 333 2 0 518 12 13 275 0 2 232 0 3 99 2 0 97 7 9 152 0 10 373 1 2 282 0 1 19 2 0 560 6 5 41 3 7 23 0 3 247 15 0 279 8 7 51 6 5 8 1 0 4 2 1 744 23 21 301 1 9 1144 0 2 49 1 4 12 chain 37775 chr15 101991189 + 58423066 58423584 MLT2A2 560 + 0 516 36224 90 12 7 100 0 2 136 1 2 55 0 1 4 7 6 113 chain 13412 chr15 101991189 + 58480614 58480826 MER30 238 + 0 231 64452 15 28 32 59 5 20 105 chain 31807 chr15 101991189 + 58623527 58623979 L1PA8 5853 + 5408 5853 40490 156 1 0 46 2 0 69 1 0 5 19 18 38 2 1 19 1 0 93 chain 23510 chr15 101991189 + 58624002 58624314 AluSc 308 + 0 307 51576 28 1 0 103 4 2 155 2 0 19 chain 82283 chr15 101991189 + 58768203 58769165 LTR13A 966 + 0 966 21183 412 0 2 53 4 7 225 11 10 257 chain 3534 chr15 101991189 + 58793025 58793161 L1MB8 1703 + 1548 1625 94988 40 80 21 16 chain 3883 chr15 101991189 + 58830373 58830588 Tigger4a 237 - 103 237 92272 38 59 69 18 91 0 9 chain 67372 chr15 101991189 + 58940426 58941458 L1PB1 5432 + 4405 5424 24605 223 3 0 62 0 1 113 6 15 155 0 3 104 0 4 16 21 19 18 1 0 9 1 0 9 2 0 3 2 0 8 2 0 53 19 17 33 23 26 15 9 0 14 10 7 14 2 0 27 1 0 19 1 0 10 1 0 18 1 0 4 chain 4960 chr15 101991189 + 58958565 58958752 MER8 282 + 0 235 85838 40 66 0 11 37 151 33 chain 2952 chr15 101991189 + 58997260 58997415 Charlie1a 1436 + 1 143 100356 20 108 95 27 chain 4386 chr15 101991189 + 59315596 59315645 MIR 256 + 85 134 88964 49 chain 6544 chr15 101991189 + 59334305 59334450 L1MA3 4352 + 4195 4332 79179 10 0 2 29 4 0 24 2 0 22 12 10 14 9 8 14 1 0 4 chain 6529 chr15 101991189 + 59390206 59390315 U13_ 108 + 0 103 79232 44 0 2 6 14 6 45 chain 22645 chr15 101991189 + 59426336 59426617 AluSp 311 + 12 287 52915 45 0 1 61 8 0 54 0 1 113 chain 121686 chr15 101991189 + 59489338 59491669 L1MA3 4352 + 2509 4305 15232 64 12 11 141 18 17 10 6 7 22 0 1 284 1 0 25 207 0 172 28 50 68 1 0 79 2 0 57 317 0 173 5 6 164 1 2 24 1 2 75 5 0 130 48 26 60 1 0 9 1 2 4 1 0 65 2 0 23 1 0 6 1 0 17 chain 10891 chr15 101991189 + 59529199 59529376 LTR8 732 + 16 212 68710 16 9 18 98 16 26 38 chain 17045 chr15 101991189 + 59603613 59603955 THE1B 368 + 0 368 59761 43 13 29 28 48 46 5 0 2 45 1 0 4 31 42 124 chain 57517 chr15 101991189 + 59608979 59609756 MER4E1 777 + 0 777 27099 23 0 2 50 5 7 111 1 0 15 1 0 106 10 14 42 1 4 162 3 1 5 9 0 8 0 1 35 0 1 190 chain 3122 chr15 101991189 + 59655879 59656330 L2a 937 + 302 750 98616 36 392 389 23 chain 12641 chr15 101991189 + 59708897 59709064 LTR71B 605 + 0 181 65730 123 5 19 39 chain 23311 chr15 101991189 + 59737318 59737614 AluSp 311 + 0 294 51914 52 7 5 237 chain 64043 chr15 101991189 + 59784831 59785734 L1PB 1623 + 630 1512 25402 514 28 24 128 2 1 11 7 0 132 16 14 30 1 0 5 3 0 12 4 1 10 chain 16916 chr15 101991189 + 59789703 59789918 THE1B-int 1605 + 1389 1605 59892 62 0 1 153 chain 536748 chr15 101991189 + 59803402 59809484 L1PA4 6152 + 51 6138 1523 11 2 0 586 0 1 305 0 2 107 0 2 2750 1 0 536 0 4 254 1 0 1289 1 0 110 5 6 124 chain 41549 chr15 101991189 + 59825425 59825878 L1PA3long 6157 + 5702 6155 33654 453 chain 75177 chr15 101991189 + 59887431 59888395 L1PA8 5853 + 4919 5853 22803 46 1 2 39 1 0 3 6 0 532 22 5 16 1 0 46 2 0 72 1 0 13 1 0 47 2 1 19 1 0 93 chain 182269 chr15 101991189 + 59910930 59912988 L1PA5 6144 + 4076 6143 10483 260 0 8 184 0 1 99 1 0 326 0 1 1188 chain 23422 chr15 101991189 + 59926955 59927319 L1PA8 5853 + 5489 5853 51723 17 10 9 33 0 1 13 1 0 47 2 0 57 1 0 9 0 1 6 1 0 10 10 9 26 8 14 19 1 0 93 chain 5454 chr15 101991189 + 59931990 59932060 MER5A1 166 + 8 78 83439 70 chain 5388 chr15 101991189 + 60020034 60020103 MER58B 340 + 118 187 83757 69 chain 5746 chr15 101991189 + 60036675 60036747 Tigger3b 1229 + 886 958 82146 72 chain 25809 chr15 101991189 + 60089144 60089417 AluYa5 310 + 35 308 48002 273 chain 3600 chr15 101991189 + 60163822 60163910 ORSL 269 + 158 246 94425 26 35 35 27 chain 34534 chr15 101991189 + 60163926 60164490 L1MA3 4352 + 3768 4308 38336 285 82 60 92 0 2 25 6 3 25 2 0 20 1 3 5 1 0 20 chain 74187 chr15 101991189 + 60173185 60174037 L1PA5 6144 + 5218 6077 23036 77 0 7 775 chain 14448 chr15 101991189 + 60188477 60188659 L1PA5 6144 + 5817 6002 62969 39 1 4 142 chain 12528 chr15 101991189 + 60188660 60188800 L1PA5 6144 + 6002 6142 65931 140 chain 36569 chr15 101991189 + 60212861 60213337 L1PA8 5853 + 5371 5853 37030 103 0 1 45 0 1 27 0 4 12 1 0 45 2 0 73 1 6 52 2 1 19 1 0 93 chain 494443 chr15 101991189 + 60237176 60243307 L1PA6 6164 + 0 6161 3297 246 1 0 4 0 1 34 0 2 159 12 4 119 1 0 11 2 0 50 19 23 134 0 17 226 0 1 88 0 1 608 1 0 128 1 6 156 0 6 6 11 5 295 2 1 370 0 1 45 2 1 21 0 6 321 0 4 91 12 0 32 8 1 16 10 14 26 0 2 56 0 1 168 0 4 19 1 0 422 0 1 374 1 2 986 0 5 76 0 2 25 1 4 212 4 4 518 chain 4206 chr15 101991189 + 60276710 60276805 L1PB1 5432 + 5337 5427 90079 9 2 0 24 1 0 17 18 17 19 1 0 4 chain 29732 chr15 101991189 + 60311421 60311789 L1PA6 6164 + 5795 6156 42326 19 7 0 342 chain 8487 chr15 101991189 + 60313970 60314116 MSTA 426 + 45 187 73699 72 18 0 9 10 24 37 chain 256633 chr15 101991189 + 60331600 60334795 L1PA3long 6157 + 1829 5084 8072 359 0 2 64 2 1 71 2 1 213 0 3 149 8 13 9 5 0 49 0 24 402 5 4 21 0 1 393 0 27 47 0 7 773 2 1 324 0 26 10 28 2 259 chain 169273 chr15 101991189 + 60365876 60368305 SVA_E 1901 + 0 1879 11139 153 1 0 327 0 40 297 1 0 26 1 0 80 271 0 111 318 0 233 0 1 4 0 1 606 chain 9631 chr15 101991189 + 60366770 60366979 SVA_E 1901 + 927 1141 37229 39 8 13 162 chain 1877 chr15 101991189 + 60366979 60367020 SVA_E 1901 + 1015 1057 61985 37 0 1 4 chain 6312 chr15 101991189 + 60367144 60367215 SVA_E 1901 + 985 1057 72219 67 0 1 4 chain 5177 chr15 101991189 + 60367217 60367273 SVA_E 1901 + 959 1015 61152 56 chain 8710 chr15 101991189 + 60367273 60367462 SVA_E 1901 + 1141 1287 37229 93 39 0 27 4 0 26 chain 2126 chr15 101991189 + 60367366 60367389 SVA_E 1901 + 1107 1130 61152 23 chain 4538 chr15 101991189 + 60392311 60392383 MADE1 96 + 0 96 88111 16 5 30 33 1 0 17 chain 10072 chr15 101991189 + 60518942 60519168 MER44A 345 + 90 345 70248 11 0 2 9 11 0 53 1 4 8 0 1 56 4 0 7 28 44 13 9 31 16 chain 6239 chr15 101991189 + 60562876 60562972 LTR23 429 + 215 310 80210 57 8 7 31 chain 24630 chr15 101991189 + 60692814 60693137 L1P3 4156 + 3820 4139 49827 10 1 0 277 2 0 5 2 1 26 chain 47768 chr15 101991189 + 60806906 60807658 L1PB 1623 + 884 1586 30373 413 28 13 44 0 1 91 1 0 7 2 1 30 1 0 3 3 0 14 5 1 13 1 0 9 53 30 21 2 0 11 chain 15388 chr15 101991189 + 60808776 60809162 L1PB1 5432 + 5107 5423 61801 7 13 0 32 1 0 6 38 7 9 2 0 52 2 1 10 7 6 45 1 0 14 26 15 15 13 10 10 2 0 24 1 0 21 1 0 13 2 1 13 1 0 5 chain 130788 chr15 101991189 + 60946237 60947708 SVA_C 1631 + 0 1631 13946 23 0 3 708 0 80 38 4 0 12 1 0 47 1 0 44 2 0 18 0 85 573 chain 413400 chr15 101991189 + 60949966 60954454 L1PA2 6032 + 1542 6031 4981 2971 0 1 1517 chain 35923 chr15 101991189 + 61260773 61261169 L1PA3long 6157 + 5745 6149 37458 211 0 8 185 chain 187645 chr15 101991189 + 61345370 61347563 L1PA6 6164 + 3939 6162 10230 186 0 1 167 0 1 788 0 6 11 6 0 243 0 1 228 0 26 471 0 1 93 chain 26510 chr15 101991189 + 61405120 61405413 L1PA4 6152 + 5859 6152 46969 293 chain 17887 chr15 101991189 + 61559762 61560001 Tigger2 2703 + 2288 2529 58778 25 9 7 192 0 4 13 chain 113377 chr15 101991189 + 61585395 61586772 L1PA7 6471 + 5073 6459 16623 112 1 0 407 7 11 18 7 10 667 11 14 147 chain 13784 chr15 101991189 + 61588763 61588924 L1PA8A 6298 + 6129 6291 63907 56 0 1 105 chain 4755 chr15 101991189 + 61590803 61590862 L1MB3 1562 + 1360 1419 86927 59 chain 36547 chr15 101991189 + 61636085 61636649 L1PB3 3668 + 2987 3582 37044 19 0 2 8 0 1 206 17 69 98 4 3 48 0 1 36 19 3 18 1 0 4 1 0 25 3 1 37 7 3 13 chain 10356 chr15 101991189 + 61672561 61672671 AluYb8 318 + 208 318 69694 110 chain 32191 chr15 101991189 + 61694908 61695295 THE1A-int 1579 + 1182 1574 40199 67 0 3 118 0 6 137 4 0 61 chain 24924 chr15 101991189 + 61695300 61695608 THE1A 353 + 0 307 49391 110 1 0 197 chain 17104 chr15 101991189 + 61711525 61711864 L1PB1 5432 + 5120 5427 59689 18 1 0 9 28 21 52 2 1 16 1 0 43 1 0 16 23 12 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 27928 chr15 101991189 + 61775663 61776025 L1PA16 3655 + 3223 3584 44989 67 1 0 109 0 3 176 3 0 6 chain 5760 chr15 101991189 + 61869798 61869869 MER5A 189 + 56 128 82087 67 0 1 4 chain 6301 chr15 101991189 + 61896143 61896223 L1MA4 2864 + 195 275 79990 18 1 0 4 0 1 57 chain 539404 chr15 101991189 + 61896239 61902266 L1PA3long 6157 + 0 6152 1377 153 0 1 622 0 128 2440 16 8 1002 0 4 949 1 0 707 0 1 137 chain 26311 chr15 101991189 + 61909840 61910132 L1PA5 6144 + 5847 6139 47251 292 chain 3155 chr15 101991189 + 61969154 61969196 MIR 256 + 173 215 98311 42 chain 10048 chr15 101991189 + 62007838 62007958 AluSc 308 + 14 134 70308 120 chain 42396 chr15 101991189 + 62015480 62015945 L1HS 6032 + 5573 6031 33132 302 7 0 156 chain 6924 chr15 101991189 + 62020937 62021092 L1PB4 2604 + 2387 2536 77871 26 22 14 47 29 31 31 chain 70244 chr15 101991189 + 62039470 62040505 L1MA3 4352 + 3339 4352 23939 150 1 3 529 0 1 68 43 31 81 0 2 6 1 0 26 12 7 10 8 6 23 8 6 29 1 0 11 1 0 5 5 2 17 chain 3690 chr15 101991189 + 62045246 62045317 MADE1 96 + 8 96 93678 12 9 25 25 1 2 24 chain 19245 chr15 101991189 + 62054472 62054733 L1PA8 5853 + 5594 5853 57301 9 3 0 4 0 1 71 1 0 9 1 0 49 1 4 19 2 1 92 chain 88107 chr15 101991189 + 62056150 62057149 LTR13 1007 + 1 1007 20028 92 0 2 13 1 7 189 1 0 703 chain 3355 chr15 101991189 + 62093050 62093130 MLT1N2 510 + 388 468 96559 32 24 25 6 1 0 17 chain 142035 chr15 101991189 + 62099732 62101319 L1PA4 6152 + 4555 6143 12932 609 0 1 978 chain 22489 chr15 101991189 + 62115444 62115705 AluSp 311 + 2 264 53133 200 4 5 57 chain 13608 chr15 101991189 + 62117629 62117790 Tigger3a 397 + 139 300 64155 161 chain 14423 chr15 101991189 + 62138940 62139117 LTR54 533 + 0 177 63001 177 chain 131564 chr15 101991189 + 62143636 62145082 L1PA2 6032 + 4594 6032 13865 496 0 1 91 0 4 835 13 0 11 chain 14344 chr15 101991189 + 62177405 62177581 L1PA5 6144 + 5969 6144 63122 14 2 1 160 chain 17084 chr15 101991189 + 62180416 62180746 L1MA5A 2387 + 2009 2306 59720 24 1 0 22 9 8 46 1 0 6 5 10 32 2 0 30 1 0 28 8 5 10 28 0 65 1 0 11 chain 8585 chr15 101991189 + 62200333 62200507 L1PB4 2604 + 2398 2570 73479 81 6 0 6 16 21 25 10 8 5 0 2 6 1 0 18 chain 3272 chr15 101991189 + 62208136 62208182 LTR12D 1347 + 1036 1081 97275 13 1 0 32 chain 57204 chr15 101991189 + 62218971 62219613 SVA_C 1631 + 979 1622 27194 24 0 1 618 chain 174414 chr15 101991189 + 62309862 62312486 L1MA1 4479 + 1607 4172 10874 66 5 7 12 3 4 210 4 1 131 0 8 36 2 4 100 0 4 74 10 5 122 14 15 216 4 6 42 1 0 9 0 4 88 2 0 25 0 1 7 1 0 154 1 0 27 2 0 80 2 1 95 2 0 16 4 0 73 3 2 11 7 4 46 10 5 71 3 0 32 6 8 245 18 20 21 1 0 24 2 0 9 11 10 68 1 0 20 7 5 8 1 0 64 1 2 4 1 0 18 1 0 4 4 1 71 35 0 55 1 0 28 12 10 23 1 0 12 1 0 6 4 2 13 chain 24488 chr15 101991189 + 62367306 62367587 AluSc5 308 + 18 299 50051 281 chain 30282 chr15 101991189 + 62371911 62372290 MLT2A1 477 + 1 381 41781 168 4 1 9 0 1 21 0 3 177 chain 108447 chr15 101991189 + 62398422 62399978 THE1C-int 1605 + 0 1605 17260 13 3 2 42 5 29 24 0 54 280 10 17 34 5 8 65 0 54 86 0 1 215 95 0 153 0 1 66 25 22 6 0 4 429 chain 50830 chr15 101991189 + 62420585 62421221 PABL_A 660 + 0 660 29265 24 0 15 12 0 4 29 8 17 373 4 0 186 chain 54836 chr15 101991189 + 62463916 62464570 L1PA6 6164 + 5495 6152 27934 67 0 1 97 1 3 489 chain 5111 chr15 101991189 + 62786808 62786888 MADE1 96 + 0 96 85103 20 9 25 51 chain 3310 chr15 101991189 + 62809158 62809217 MER53 195 + 126 187 96922 11 3 0 33 1 6 11 chain 204939 chr15 101991189 + 62859257 62861668 L1PA6 6164 + 3724 6156 9542 332 1 2 37 0 5 267 0 4 941 0 4 692 0 8 35 1 0 105 chain 86619 chr15 101991189 + 62924853 62925811 L1PA3long 6157 + 5192 6150 20294 958 chain 30576 chr15 101991189 + 62983920 62984351 MER57A1 433 + 0 433 41498 54 8 9 194 25 26 150 chain 22943 chr15 101991189 + 63079152 63079441 AluSp 311 + 0 295 52455 71 10 16 208 chain 137575 chr15 101991189 + 63098255 63099787 SVA_D 2077 + 15 2071 13300 746 0 40 107 1 0 10 0 36 36 1 2 36 0 448 595 chain 4923 chr15 101991189 + 63152317 63152418 MER119 576 + 408 535 86038 19 1 0 16 1 30 35 15 13 14 chain 8487 chr15 101991189 + 63184260 63184359 MER1A 529 + 255 354 73700 99 chain 3308 chr15 101991189 + 63401309 63401374 MLT1H2 457 + 369 433 96944 18 16 15 31 chain 9538 chr15 101991189 + 63420185 63420586 MLT1C 463 + 0 417 71398 24 6 8 73 249 263 49 chain 3234 chr15 101991189 + 63459529 63459574 LTR12C 1709 + 787 872 97633 31 0 40 14 chain 3954 chr15 101991189 + 63469962 63470010 L1MC4 1079 + 830 878 91731 48 chain 4162 chr15 101991189 + 63587412 63587479 MER6B 211 - 0 66 90372 44 8 7 15 chain 6611 chr15 101991189 + 63646894 63646973 L1PB4 2604 + 1956 2035 78940 79 chain 12641 chr15 101991189 + 63751223 63751384 Tigger3a 397 + 142 307 65731 30 0 4 131 chain 46072 chr15 101991189 + 63793807 63794347 MER41A 554 + 13 554 31031 142 0 1 398 chain 13565 chr15 101991189 + 63838113 63838422 MER47B 469 + 0 398 64227 17 4 17 14 1 0 73 24 34 6 3 0 6 0 3 19 37 103 45 14 15 46 chain 37193 chr15 101991189 + 63844650 63845068 L1PA5 6144 + 5720 6138 36614 418 chain 122911 chr15 101991189 + 63846398 63847964 THE1A-int 1579 + 0 1579 15036 267 8 7 149 20 22 138 0 1 8 6 15 731 0 1 117 0 1 122 chain 10640 chr15 101991189 + 63848502 63848618 THE1A 353 + 237 353 69148 116 chain 87846 chr15 101991189 + 63852474 63854275 L1PA16 3655 + 1679 3624 20076 77 1 3 24 1 2 9 31 36 95 17 18 50 14 16 4 1 0 256 1 0 76 12 18 42 0 4 35 6 7 40 0 1 5 1 0 178 2 1 64 16 79 45 424 509 42 0 1 152 0 1 9 3 1 13 5 0 4 13 0 7 5 0 21 chain 6731 chr15 101991189 + 63976728 63976816 MER33 330 + 70 157 78538 58 1 0 29 chain 6642 chr15 101991189 + 64007850 64008091 L1MB8 1703 + 1439 1631 78835 77 143 94 21 chain 31333 chr15 101991189 + 64038777 64039222 MER4A1 472 + 0 467 40861 226 31 26 46 0 1 22 0 13 34 0 11 12 9 11 65 chain 107837 chr15 101991189 + 64060668 64062121 LTR12C 1709 + 0 1708 17346 214 37 5 248 2 0 231 1 42 17 0 2 78 1 0 123 1 158 106 11 4 93 0 2 77 0 102 95 37 28 56 0 2 25 chain 58168 chr15 101991189 + 64221716 64222387 L1PA8A 6298 + 5620 6291 26913 627 2 0 4 0 2 38 chain 7869 chr15 101991189 + 64282982 64283147 L1PB1 5432 + 5268 5420 75201 13 1 0 11 21 17 17 4 2 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 160847 chr15 101991189 + 64311884 64313754 L1PA7 6471 + 4579 6464 11692 73 2 0 5 0 2 5 3 10 139 0 4 168 1 0 636 1 0 79 0 2 21 0 1 85 0 3 652 chain 32785 chr15 101991189 + 64316592 64317041 LTR2 463 + 1 463 39680 349 29 30 31 1 13 39 chain 41832 chr15 101991189 + 64324215 64324765 MLT2A2 560 + 0 560 33467 146 1 2 49 6 7 65 3 0 137 0 11 143 chain 559982 chr15 101991189 + 64326660 64332685 L1PA2 6032 + 0 6030 174 1700 0 1 3481 0 4 844 chain 16394 chr15 101991189 + 64343012 64343207 AluSp 311 + 82 277 60531 195 chain 2974 chr15 101991189 + 64356897 64356928 MER4D 903 + 791 822 100112 31 chain 3551 chr15 101991189 + 64421642 64421735 Tigger3a 397 + 139 231 94839 20 39 38 34 chain 16148 chr15 101991189 + 64542938 64543158 L1PA8 5853 + 5637 5853 60815 41 2 1 11 1 0 45 8 7 18 1 0 93 chain 8178 chr15 101991189 + 64652887 64652987 HY3 101 + 0 100 74468 100 chain 17462 chr15 101991189 + 64655219 64655431 AluSp 311 + 57 277 59285 6 0 1 76 0 1 40 0 6 90 chain 5196 chr15 101991189 + 64671279 64671340 U6 107 + 17 78 84692 61 chain 20038 chr15 101991189 + 64769191 64769457 AluSp 311 + 11 309 56330 42 3 40 73 1 2 131 6 0 10 chain 5120 chr15 101991189 + 64923082 64923144 MLT1D 503 + 0 62 85059 62 chain 31126 chr15 101991189 + 64929832 64930257 L1PA8 5853 + 5432 5853 41038 127 2 1 48 2 0 38 1 0 33 1 0 8 4 7 49 1 0 17 1 0 93 chain 3642 chr15 101991189 + 64931739 64931836 MIRb 242 + 72 174 94085 37 42 47 18 chain 146059 chr15 101991189 + 65074841 65076588 LTR12C 1709 + 0 1709 12608 707 41 0 130 1 0 274 9 6 107 0 4 149 1 0 301 0 4 27 chain 39838 chr15 101991189 + 65136425 65136928 MER41C 542 + 0 506 34788 49 0 1 4 1 0 260 1 2 76 0 2 112 chain 32238 chr15 101991189 + 65139145 65139594 MER83 447 + 0 446 40160 8 0 5 46 0 1 4 1 0 142 8 4 194 16 12 30 chain 8515 chr15 101991189 + 65145128 65145249 L1PA8 5853 + 5706 5837 73649 34 2 1 21 0 7 40 0 4 24 chain 29199 chr15 101991189 + 65168426 65168758 L1PA5 6144 + 5812 6144 43047 332 chain 5918 chr15 101991189 + 65296050 65296114 U5 65 + 0 64 81403 64 chain 6040 chr15 101991189 + 65304676 65304740 U5 65 + 0 64 80924 64 chain 29790 chr15 101991189 + 65347987 65348376 MER41A 554 + 165 554 42246 23 10 0 7 9 19 340 chain 145039 chr15 101991189 + 65350764 65353155 MER41-int 2638 + 231 2352 12686 17 1 0 5 55 40 118 0 1 40 3 0 6 0 4 24 16 20 23 3 4 10 3 7 128 2 1 36 335 32 60 1 15 186 0 1 77 0 2 174 20 25 35 0 1 32 0 5 11 7 10 151 0 7 336 2 0 36 2 0 120 0 3 192 3 5 121 chain 25574 chr15 101991189 + 65353561 65353892 MER41A 554 + 94 424 48363 25 9 3 94 0 1 188 0 4 15 chain 13937 chr15 101991189 + 65367381 65367538 L1PA3long 6157 + 6001 6157 63691 139 1 0 17 chain 4642 chr15 101991189 + 65406184 65406240 MER113 458 + 255 311 87580 56 chain 2629 chr15 101991189 + 65411571 65411599 L1MB7 1623 + 1389 1417 102839 28 chain 6505 chr15 101991189 + 65502753 65502829 HY4 93 + 13 89 79325 76 chain 3591 chr15 101991189 + 65521063 65521115 LTR75 556 + 440 492 94506 7 2 0 5 0 2 38 chain 25522 chr15 101991189 + 65529536 65529842 AluSp 311 + 0 299 48448 140 0 6 145 13 0 8 chain 60991 chr15 101991189 + 65536814 65537941 Tigger1 2417 + 465 1299 26108 58 0 1 37 0 4 132 7 8 54 0 1 23 0 2 64 1 7 41 1 0 85 0 6 48 0 3 131 316 0 129 chain 13277 chr15 101991189 + 65582298 65582476 L1MB5 1630 + 356 533 64667 112 2 1 64 chain 4258 chr15 101991189 + 65719463 65719594 L1MC4 1079 + 586 708 89770 24 17 14 15 37 32 4 1 0 33 chain 75998 chr15 101991189 + 65733652 65734621 LTR5_Hs 974 + 0 974 22568 169 1 0 119 1 2 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 23735 chr15 101991189 + 65825638 65826118 LTR2B 499 + 0 499 51220 14 1 0 38 48 59 14 8 0 40 0 7 43 6 2 10 0 15 66 0 1 11 28 27 35 35 34 83 chain 25606 chr15 101991189 + 65878401 65878706 AluYk4 311 + 0 305 48308 132 0 4 75 0 1 86 5 0 7 chain 14488 chr15 101991189 + 65893210 65893583 Tigger4 2445 + 2047 2408 62908 27 0 2 25 35 44 61 30 28 26 1 0 8 2 1 15 2 1 17 16 13 5 1 0 40 26 19 15 5 0 3 2 0 11 chain 19906 chr15 101991189 + 65976920 65977176 AluY 311 + 24 292 56523 22 0 9 76 1 2 128 6 8 23 chain 4385 chr15 101991189 + 66026014 66026158 MER5B 177 - 22 162 88971 31 81 77 32 chain 3817 chr15 101991189 + 66032204 66032291 MSTD 398 + 292 378 92732 21 31 30 35 chain 4159 chr15 101991189 + 66041694 66041741 MER58A 224 + 168 215 90406 47 chain 306406 chr15 101991189 + 66084316 66088368 L1PBa1 4058 + 10 4037 6690 23 19 22 197 0 1 94 5 15 68 2 0 132 9 8 48 14 13 25 35 6 220 1 0 4 1 2 101 3 0 5 1 4 155 0 1 48 28 28 269 0 3 36 0 4 100 0 5 15 1 0 62 0 3 84 1 4 647 4 0 140 0 4 54 0 5 654 0 5 110 8 7 104 25 18 102 2 1 6 1 0 29 1 0 34 2 0 7 2 0 108 3 1 15 1 0 14 7 0 15 2 0 19 14 9 21 1 0 9 2 1 7 0 2 5 1 0 5 1 0 9 1 0 7 0 2 7 1 0 39 chain 22076 chr15 101991189 + 66193947 66194321 L1PB1 5432 + 4913 5279 53732 82 3 2 106 15 18 17 2 1 5 1 0 12 2 0 3 2 0 9 2 0 52 20 18 41 chain 27365 chr15 101991189 + 66262853 66263210 THE1B 368 + 0 368 45745 44 6 21 104 1 0 31 2 0 94 1 0 74 chain 11520 chr15 101991189 + 66274557 66274835 L1MB2 1706 + 1428 1694 67714 79 23 25 31 88 72 41 0 2 16 chain 7924 chr15 101991189 + 66365868 66365961 MER41B 635 + 517 610 75061 93 chain 226698 chr15 101991189 + 66449876 66452300 L1HS 6032 + 3604 6032 8847 1578 0 4 846 chain 13836 chr15 101991189 + 66467260 66467440 LTR8 732 + 11 205 63817 4 0 1 16 0 9 148 0 4 12 chain 12363 chr15 101991189 + 66556605 66556896 L1MB2 1706 + 1374 1690 66207 42 6 8 89 26 37 18 8 29 14 1 0 8 55 47 24 chain 33260 chr15 101991189 + 66581567 66581970 THE1A-int 1579 + 1174 1579 39296 379 0 1 20 0 1 4 chain 27233 chr15 101991189 + 66581970 66582322 THE1A 353 + 0 351 45922 106 5 4 241 chain 9636 chr15 101991189 + 66589521 66589672 LTR23 429 + 57 205 71190 38 13 9 43 1 2 56 chain 14210 chr15 101991189 + 66608350 66608593 L1PA16 3655 + 3400 3619 63311 18 1 3 148 11 8 16 33 10 16 chain 8708 chr15 101991189 + 66626152 66626289 Tigger3b 1229 + 62 203 73195 54 7 10 22 12 13 42 chain 3043 chr15 101991189 + 66668611 66668671 MLT1D 503 + 404 466 99392 28 13 15 19 chain 7953 chr15 101991189 + 66682759 66682997 MLT1F2 592 + 232 535 74995 47 13 17 23 51 115 25 1 19 10 24 6 36 3 0 5 chain 54705 chr15 101991189 + 66690769 66691407 L1PA5 6144 + 5491 6132 27972 379 3 0 10 0 1 29 1 5 83 1 2 132 chain 21855 chr15 101991189 + 66817555 66817808 AluYc3 301 + 38 291 54034 253 chain 46695 chr15 101991189 + 66828977 66829606 MER41B 635 + 0 635 30774 123 16 17 147 0 2 164 1 0 15 1 0 81 13 18 68 chain 5178 chr15 101991189 + 66860504 66860565 MIR 256 + 95 156 84778 61 chain 14242 chr15 101991189 + 66955675 66955878 L1PA8 5853 + 5654 5853 63275 21 5 4 9 1 0 52 2 1 19 1 0 93 chain 3620 chr15 101991189 + 67001618 67001663 MLT1F-int 966 + 587 631 94280 39 1 0 5 chain 4377 chr15 101991189 + 67095496 67095549 MER45B 1037 + 50 103 89016 53 chain 3559 chr15 101991189 + 67153585 67153761 MER20 218 + 24 188 94758 29 106 93 14 4 0 14 0 5 9 chain 21618 chr15 101991189 + 67228445 67228833 L1PA15 4387 + 3985 4354 54328 60 1 0 59 1 0 27 9 8 46 1 0 23 4 0 8 2 1 39 17 14 7 1 0 4 0 1 34 2 0 10 9 4 24 chain 59966 chr15 101991189 + 67246565 67247288 LTR12 884 + 0 884 26382 24 1 0 16 0 59 232 0 47 372 6 62 72 chain 50075 chr15 101991189 + 67297777 67299507 L1MA3 4352 + 3168 4277 29534 95 2 1 13 0 5 95 0 2 8 4 0 32 854 263 38 6 18 112 0 4 27 6 7 17 8 1 187 113 73 32 0 4 33 4 0 23 2 0 19 chain 7457 chr15 101991189 + 67312281 67312385 Charlie4a 502 + 358 472 76229 27 0 11 23 1 0 53 chain 4681 chr15 101991189 + 67367926 67367980 MIRc 230 + 64 118 87377 54 chain 3452 chr15 101991189 + 67380151 67380190 THE1D 372 + 333 372 95639 39 chain 302067 chr15 101991189 + 67436179 67440419 L1PBa1 4058 + 119 4040 6778 118 2 0 193 8 6 142 0 16 29 8 7 26 6 5 496 6 1 336 0 3 41 0 4 95 0 4 21 8 7 100 0 1 240 0 1 5 6 5 67 1 0 376 1 3 145 0 1 47 0 5 98 0 2 519 0 1 150 1 0 42 8 14 52 1 0 5 8 1 6 314 0 24 0 1 85 1 0 7 1 0 29 1 0 40 2 0 109 3 1 22 1 0 7 6 0 15 3 1 12 20 15 21 1 0 9 2 1 10 9 6 4 1 0 8 1 0 12 9 8 38 chain 40756 chr15 101991189 + 67636740 67637312 MLT2A2 560 + 9 560 34116 72 41 7 92 1 0 14 1 4 195 0 6 6 3 8 147 chain 69665 chr15 101991189 + 67694490 67695268 L1PA3long 6157 + 5378 6156 24083 778 chain 24481 chr15 101991189 + 67846596 67846968 THE1D 372 + 0 372 50062 15 0 2 15 1 0 23 9 0 10 13 14 105 16 18 109 0 5 56 chain 6465 chr15 101991189 + 67936816 67936891 LTR12F 595 + 402 477 79465 75 chain 58483 chr15 101991189 + 67940212 67940966 MER4E 760 + 0 760 26817 151 12 15 14 1 2 128 7 8 43 0 2 81 1 0 316 chain 10336 chr15 101991189 + 67942995 67943261 MLT1A0 366 + 54 321 69723 95 78 78 12 38 39 43 chain 6406 chr15 101991189 + 67989332 67989404 LTR16E1 515 + 377 449 79653 72 chain 79435 chr15 101991189 + 68006699 68007745 MER11C 1089 + 0 1073 21756 246 0 9 64 0 4 62 1 0 143 0 2 27 25 26 28 5 7 72 0 4 5 1 0 14 0 5 19 0 1 127 0 1 54 1 0 142 0 1 10 chain 17378 chr15 101991189 + 68007759 68007984 MSTA-int 1630 + 1398 1622 59382 59 3 1 58 1 0 95 0 2 9 chain 5032 chr15 101991189 + 68199934 68199995 MER53 195 + 127 188 85502 61 chain 154574 chr15 101991189 + 68221258 68223141 SVA_A 1864 + 29 1863 12083 500 4 44 108 11 9 66 5 7 77 2 0 46 1 0 182 40 0 21 16 10 46 40 0 718 chain 2180 chr15 101991189 + 68222260 68222300 SVA_A 1864 + 734 773 37490 29 1 0 10 chain 2775 chr15 101991189 + 68222383 68222423 SVA_A 1864 + 1034 1072 29722 27 2 0 11 chain 4737 chr15 101991189 + 68236303 68236551 L1MB7 1623 + 1381 1591 87032 43 1 0 5 168 131 31 chain 26929 chr15 101991189 + 68308114 68308452 HSMAR2 1300 + 1 338 46361 63 1 0 274 chain 59184 chr15 101991189 + 68394919 68395670 L1P2 5180 + 2 1498 26610 86 0 729 256 7 8 264 3 4 27 0 10 67 4 8 37 chain 17120 chr15 101991189 + 68395670 68395873 L1PA6 6164 + 5950 6156 59673 82 0 3 121 chain 64029 chr15 101991189 + 68397849 68398565 L1P1 4361 + 1826 2544 25407 369 0 2 347 chain 7186 chr15 101991189 + 68476697 68476827 MSTA 426 + 31 179 76986 49 34 52 47 chain 14055 chr15 101991189 + 68481476 68481782 MER61A 341 + 0 335 63512 40 0 10 8 25 40 52 45 46 15 1 0 44 0 4 18 1 0 6 0 1 7 12 11 28 0 1 4 chain 4410 chr15 101991189 + 68506452 68506502 MLT2B4 540 + 1 51 88847 50 chain 42747 chr15 101991189 + 68506550 68507156 PRIMA4_LTR 623 + 29 623 32919 62 0 1 4 3 1 91 11 7 66 6 3 64 1 0 46 25 22 46 2 3 167 1 0 11 chain 3766 chr15 101991189 + 68688367 68688489 Tigger4a 237 - 115 237 93104 26 61 61 35 chain 15312 chr15 101991189 + 68881503 68881714 MER44A 345 + 133 345 61897 105 9 10 97 chain 212743 chr15 101991189 + 68916566 68918923 L1PA4 6152 + 3151 5516 9238 26 1 0 74 0 3 428 7 0 1549 0 1 72 0 4 73 0 8 127 chain 28010 chr15 101991189 + 68984156 68984654 HERV1_LTRa 508 + 0 508 44852 26 39 48 13 20 10 109 0 1 21 66 76 204 chain 29768 chr15 101991189 + 68988106 68988552 LTR7B 505 + 9 494 42277 96 0 10 69 37 68 18 8 10 82 1 0 79 14 13 26 2 0 14 chain 37140 chr15 101991189 + 69007651 69008127 LTR10F 562 + 0 560 36652 166 7 0 20 0 93 192 2 0 89 chain 19756 chr15 101991189 + 69016842 69017122 MER4B 649 + 0 322 56724 113 1 0 4 1 2 30 8 50 123 chain 16761 chr15 101991189 + 69041754 69041981 MER30 238 + 0 229 60077 107 10 15 73 3 0 34 chain 33303 chr15 101991189 + 69069434 69069832 L1PA7 6471 + 6062 6459 39255 246 2 1 150 chain 2829 chr15 101991189 + 69197491 69197521 HSMAR1 1287 - 1257 1287 101414 30 chain 2926 chr15 101991189 + 69255485 69255534 MER119 576 + 487 535 100622 27 6 5 16 chain 11486 chr15 101991189 + 69276107 69276239 MER85 139 + 7 139 67767 132 chain 8408 chr15 101991189 + 69282125 69282276 MER20 218 + 22 172 73882 43 37 35 11 0 1 60 chain 87905 chr15 101991189 + 69331391 69333637 HUERS-P1-int 2401 + 170 1995 20068 31 9 0 4 48 0 25 1 0 11 7 2 37 4 0 7 73 46 12 5 1 13 54 26 43 3 0 7 1 0 38 1 0 8 2 0 12 29 11 26 15 8 10 9 1 16 9 6 136 14 17 103 11 3 178 1 0 9 1 0 8 2 0 49 3 1 47 18 15 22 1 0 77 1 0 32 30 7 52 5 4 26 152 82 6 2 0 6 1 0 13 2 0 3 0 3 5 1 2 59 1 0 44 6 4 41 2 1 22 6 4 10 4 0 28 37 26 8 5 0 13 2 0 19 2 1 18 9 0 11 32 22 8 4 0 7 13 0 13 1 0 7 2 0 7 6 0 3 1 0 15 5 0 10 1 0 4 98 44 11 2 1 26 3 4 6 1 0 15 5 0 6 chain 3635 chr15 101991189 + 69357563 69357603 MSTA 426 + 385 425 94133 40 chain 9137 chr15 101991189 + 69406440 69406550 HY1 111 + 0 111 72266 77 0 1 33 chain 6495 chr15 101991189 + 69545661 69545758 L1MA3 4352 + 4191 4282 79372 45 5 1 21 2 0 24 chain 5289 chr15 101991189 + 69599135 69599249 MER53 195 - 38 165 84249 37 39 52 38 chain 5964 chr15 101991189 + 69679462 69679573 MER20 218 + 32 140 81215 6 1 0 36 24 22 44 chain 4299 chr15 101991189 + 69740834 69740881 L1MB8 1703 + 1346 1393 89501 47 chain 488041 chr15 101991189 + 69769433 69775166 L1PA6 6164 + 412 6138 3468 88 11 10 76 1 0 411 7 10 477 0 1 584 0 1 257 39 0 582 0 2 278 1 2 544 2 1 1162 0 7 806 3 0 134 0 17 65 0 6 205 chain 2903 chr15 101991189 + 69915811 69915846 Charlie16a 284 + 148 183 100822 35 chain 21626 chr15 101991189 + 69945347 69945603 L1PA5 6144 + 5882 6138 54319 256 chain 8118 chr15 101991189 + 70022116 70022308 MER66B 489 + 295 489 74595 42 74 77 49 2 1 25 chain 3039 chr15 101991189 + 70110835 70110873 LTR16A 446 + 241 279 99423 38 chain 9132 chr15 101991189 + 70158750 70159090 MLT1D 503 + 88 469 72277 33 0 5 30 127 142 46 49 0 9 10 80 36 chain 5147 chr15 101991189 + 70193235 70193315 U6 107 + 0 78 84918 20 8 6 52 chain 5142 chr15 101991189 + 70288688 70288773 MIR 256 + 106 189 84949 54 12 10 19 chain 497967 chr15 101991189 + 70367847 70373901 L1PA6 6164 + 129 6160 3203 67 0 1 138 0 1 123 7 6 46 0 15 5 15 0 36 1 0 257 28 11 70 0 1 74 0 14 397 9 1 392 1 0 538 23 3 847 51 19 46 4 5 82 0 12 302 0 1 64 0 1 87 0 1 270 0 1 743 0 25 484 1 0 147 0 4 548 3 1 139 3 0 6 chain 3758 chr15 101991189 + 70382140 70382185 MLT1F 544 + 444 490 93149 30 0 1 15 chain 4754 chr15 101991189 + 70471892 70471950 MER74A 558 + 20 78 86939 58 chain 153685 chr15 101991189 + 70510435 70512607 L1PA16 3655 + 1254 3578 12129 209 6 4 77 15 10 237 0 2 207 2 1 75 8 0 163 0 10 11 0 180 48 11 11 16 4 0 160 2 1 79 4 9 139 2 0 19 1 0 63 1 0 125 3 1 7 0 2 54 1 0 26 6 5 81 17 15 237 24 5 25 0 3 7 chain 26326 chr15 101991189 + 70525290 70525670 MER51B 395 + 0 395 47232 39 8 27 147 18 16 10 1 0 6 1 0 150 chain 10658 chr15 101991189 + 70542771 70542911 L1MB7 1623 + 102 243 69117 56 1 2 83 chain 127565 chr15 101991189 + 70591513 70593077 THE1B-int 1605 + 0 1600 14346 361 13 23 44 0 26 1146 chain 156456 chr15 101991189 + 70619828 70621592 L1PA5 6144 + 4108 5873 11973 1335 0 1 429 chain 3047 chr15 101991189 + 70625909 70625946 L1PB4 2604 + 2243 2280 99341 37 chain 25048 chr15 101991189 + 70637236 70637537 AluSc 308 + 0 307 49192 47 0 6 254 chain 13784 chr15 101991189 + 70660810 70661049 MER44A 345 + 110 344 63908 65 1 6 59 10 9 22 20 12 50 1 0 11 chain 128836 chr15 101991189 + 70661792 70663223 L1PA4 6152 + 3920 5355 14173 1384 0 4 47 chain 22312 chr15 101991189 + 70727989 70728281 L1PA16 3655 + 2359 2648 53397 17 1 0 33 2 0 239 chain 517581 chr15 101991189 + 70729653 70735160 L1HS 6032 + 0 6032 2391 74 0 1 21 0 524 5412 chain 134140 chr15 101991189 + 70745059 70747035 L1PA7 6471 + 4730 6366 13636 85 327 0 19 10 14 396 22 0 377 1 0 82 1 0 106 0 3 536 1 5 13 chain 4303 chr15 101991189 + 70790091 70790143 MER6A 605 + 553 605 89482 52 chain 42244 chr15 101991189 + 70804610 70805153 MER9a2 513 + 0 513 33220 18 0 1 280 32 0 82 4 5 127 chain 3012 chr15 101991189 + 70905835 70905869 MER39 703 + 328 362 99720 34 chain 25124 chr15 101991189 + 70981219 70981506 L1PA7 6471 + 6185 6469 49081 130 1 0 144 2 0 10 chain 190501 chr15 101991189 + 71024395 71033618 L1PA10 4194 + 255 4163 10088 16 2 0 15 1 0 8 56 29 6 0 1 7 2 0 44 0 3 11 7 0 8 1 0 85 10 3 103 6 66 75 2 3 24 0 5 93 1 2 86 4 0 6 4 8 228 0 1 75 0 180 145 0 6 112 27 7 51 2 1 96 0 8 140 0 4 83 6409 920 114 1 2 96 14 14 482 2 0 6 0 2 171 25 0 176 1 0 34 3 0 26 0 1 7 1 0 13 chain 162233 chr15 101991189 + 71094580 71096330 L1PA2 6032 + 4277 6027 11594 1750 chain 42671 chr15 101991189 + 71134817 71135278 L1PA2 6032 + 5469 5930 32958 461 chain 9142 chr15 101991189 + 71135278 71135375 L1PA2 6032 + 5934 6031 72252 97 chain 557493 chr15 101991189 + 71174139 71180152 L1PA2 6032 + 5 6029 272 153 0 11 262 1 0 283 0 1 5314 chain 3131 chr15 101991189 + 71188006 71188042 MER94 134 + 63 99 98535 36 chain 8742 chr15 101991189 + 71193549 71193705 THE1B 368 + 0 164 73111 14 10 15 56 7 8 15 7 9 47 chain 19019 chr15 101991189 + 71214036 71214580 LTR12 884 + 213 884 57531 127 242 335 70 1 0 5 31 66 68 chain 13596 chr15 101991189 + 71241794 71241977 MER30 238 + 0 197 64172 109 8 22 66 chain 4268 chr15 101991189 + 71258745 71258799 MLT1C 463 + 57 112 89716 50 0 1 4 chain 340956 chr15 101991189 + 71265156 71269286 L1P3 4156 + 0 4139 6052 251 1 0 69 1 0 89 1 0 203 2 0 769 1 2 346 1 0 316 1 3 140 7 6 327 0 2 112 8 10 448 0 4 402 2 0 16 12 5 99 5 8 291 1 15 171 3 1 9 3 2 23 chain 22040 chr15 101991189 + 71275634 71275998 THE1C 375 + 13 375 53785 75 0 1 29 4 2 63 47 47 105 16 15 25 chain 10881 chr15 101991189 + 71332799 71333001 MER30 238 + 0 238 68725 16 37 52 26 0 2 11 3 15 95 0 7 14 chain 53963 chr15 101991189 + 71401595 71402235 L1PA6 6164 + 5498 6162 28241 618 0 26 14 2 0 6 chain 54123 chr15 101991189 + 71439369 71440027 L1PA7 6471 + 5813 6468 28184 177 0 3 314 8 6 148 4 0 7 chain 5541 chr15 101991189 + 71452537 71452604 MLT1A 405 + 29 97 83075 28 0 1 39 chain 70606 chr15 101991189 + 71587016 71587785 L1PA2 6032 + 5262 6031 23844 769 chain 23547 chr15 101991189 + 71595253 71595597 THE1A 353 + 8 353 51509 63 0 1 37 18 17 76 1 0 108 5 7 36 chain 63616 chr15 101991189 + 71642266 71642960 L1PA3long 6157 + 5463 6157 25500 694 chain 30773 chr15 101991189 + 71650503 71650891 MER48 407 + 0 407 41329 15 1 0 15 0 1 4 1 0 98 1 21 253 chain 21532 chr15 101991189 + 71721228 71721520 AluSc 308 + 8 293 54464 12 6 0 127 20 19 127 chain 8785 chr15 101991189 + 71734234 71734481 L1MC1 2226 + 1798 2047 73026 44 17 31 14 55 48 22 26 23 15 2 0 52 chain 82189 chr15 101991189 + 71768926 71769936 SVA_F 1814 + 896 1813 21204 51 0 15 35 3 0 14 1 0 116 0 1 10 1 0 75 102 0 61 1 0 524 1 0 15 chain 7044 chr15 101991189 + 71769232 71769334 SVA_F 1814 + 924 1037 48403 23 0 15 35 3 0 14 1 0 26 chain 2977 chr15 101991189 + 71802288 71802325 LTR12_ 688 + 454 491 100084 37 chain 91393 chr15 101991189 + 71857758 71858865 L1PA5 6144 + 5135 6144 19435 811 98 0 198 chain 7798 chr15 101991189 + 71858569 71858659 5S 121 + 0 90 75379 90 chain 3532 chr15 101991189 + 71936189 71936229 L1MA6 2487 + 2339 2379 95000 40 chain 21277 chr15 101991189 + 72056226 72056689 L1PB1 5432 + 4954 5391 54796 38 7 5 106 13 11 24 1 0 4 3 2 14 4 0 10 2 0 52 2 1 9 11 10 37 8 7 12 1 0 4 58 49 21 1 0 21 chain 24126 chr15 101991189 + 72070713 72071153 L1P4 1494 + 948 1390 50611 241 23 22 37 4 73 11 65 0 18 1 0 40 chain 86542 chr15 101991189 + 72100321 72101459 SVA_D 2077 + 328 1559 20315 58 0 68 349 40 0 75 1 0 30 3 0 12 1 0 12 1 39 15 1 0 48 2 4 92 0 1 4 22 50 203 0 1 4 15 17 132 1 0 17 chain 77989 chr15 101991189 + 72101479 72102507 SVA_F 1814 + 847 1812 20328 8 1 0 32 0 1 36 78 0 22 0 16 32 1 0 192 0 1 268 0 3 339 0 1 4 5 0 10 chain 4249 chr15 101991189 + 72101556 72101617 SVA_F 1814 + 1213 1274 37032 61 chain 4111 chr15 101991189 + 72102533 72102576 tRNA-Gln-CAG 43 + 0 43 90702 43 chain 5794 chr15 101991189 + 72237750 72237876 L1MA3 4352 + 4235 4352 81952 25 2 0 21 9 7 22 4 3 15 6 2 22 chain 9134 chr15 101991189 + 72255607 72255753 MLT2B4 540 + 400 536 72273 92 14 0 8 1 5 31 chain 163871 chr15 101991189 + 72395801 72397636 SVA_D 2077 + 6 2074 11492 19 12 0 11 13 0 881 0 137 38 0 1 126 0 1 126 0 99 478 0 20 131 chain 79671 chr15 101991189 + 72412715 72413603 L1PA5 6144 + 4986 5874 21701 888 chain 145044 chr15 101991189 + 72415698 72417304 L1PA5 6144 + 4520 6135 12685 1473 0 9 133 chain 22812 chr15 101991189 + 72510491 72510765 AluY 311 + 29 311 52640 94 0 8 180 chain 20256 chr15 101991189 + 72515073 72515312 AluSp 311 + 20 258 56071 112 2 0 92 0 1 33 chain 72987 chr15 101991189 + 72708299 72709326 MER11A 1151 + 0 1151 23317 55 0 99 66 7 11 63 4 0 32 0 2 36 0 6 18 0 1 75 1 0 76 9 13 30 5 17 235 41 24 159 4 15 36 0 7 75 chain 32813 chr15 101991189 + 72740869 72741388 L1PB 1623 + 1028 1524 39659 34 0 4 140 10 5 50 0 4 39 21 6 136 1 0 7 2 1 28 10 6 13 5 1 14 1 0 8 chain 11686 chr15 101991189 + 72863632 72864031 MLT1C 463 + 6 435 67418 16 4 6 22 13 14 38 41 42 21 7 0 6 56 78 13 69 80 93 chain 6157 chr15 101991189 + 72988815 72988892 MLT1B 390 + 304 381 80511 77 chain 22313 chr15 101991189 + 73102106 73102376 AluSx4 309 + 20 291 53392 20 1 2 249 chain 69779 chr15 101991189 + 73132411 73133538 L1PB1 5432 + 4339 5422 24047 138 0 4 148 1 0 76 0 2 103 1 2 144 6 8 41 1 0 98 3 0 13 20 3 15 1 0 12 32 25 49 2 1 15 1 0 45 1 0 15 67 50 24 1 0 20 2 1 13 4 3 15 chain 37447 chr15 101991189 + 73166878 73167285 L1PA5 6144 + 5737 6144 36444 407 chain 16926 chr15 101991189 + 73373069 73373290 MER30 238 + 0 238 59880 107 4 24 69 3 0 38 chain 12126 chr15 101991189 + 73398351 73398486 AluYb9 318 + 20 154 66614 33 1 0 101 chain 514194 chr15 101991189 + 73447700 73453931 L1PA7 6471 + 5 6272 2560 189 3 4 5 1 0 37 18 26 71 1 0 65 8 0 4 3 0 390 0 1 317 2 7 636 0 2 249 3 1 307 0 9 120 3 5 256 5 9 761 1 3 5 2 0 17 5 6 41 3 7 454 2 0 919 0 1 110 0 1 579 2 5 33 0 11 604 chain 12962 chr15 101991189 + 73507303 73507473 MER30 238 + 39 238 65163 49 0 3 19 2 28 100 chain 7346 chr15 101991189 + 73518988 73519104 L1MB2 1706 + 982 1086 76530 80 17 5 19 chain 19352 chr15 101991189 + 73524898 73525154 HSMAR2 1300 + 578 837 57177 69 7 10 180 chain 321090 chr15 101991189 + 73532643 73536205 L1HS 6032 + 1471 5048 6383 1591 1 5 64 0 4 424 0 1 672 0 4 20 0 1 782 0 1 8 chain 59670 chr15 101991189 + 73546859 73547719 L1MA2 4263 + 3211 4076 26469 96 1 0 144 0 16 100 3 0 17 6 2 38 2 9 29 1 0 134 13 10 126 9 12 11 12 10 93 7 0 18 chain 11537 chr15 101991189 + 73580231 73580383 L1PA8 5853 + 5703 5853 67689 37 2 1 19 1 0 93 chain 15128 chr15 101991189 + 73582852 73583052 MLT2A1 477 + 220 459 62129 104 1 0 67 12 52 16 chain 34157 chr15 101991189 + 73639571 73639983 LTR3B 427 + 0 411 38593 156 1 3 170 9 6 76 chain 12621 chr15 101991189 + 73672438 73672588 MSTA 426 + 257 407 65772 150 chain 3949 chr15 101991189 + 73756569 73756613 MIRc 230 + 63 107 91760 44 chain 17900 chr15 101991189 + 73783686 73783988 THE1C 375 + 29 330 58759 58 0 1 19 8 7 54 1 0 11 37 34 11 4 7 99 chain 22401 chr15 101991189 + 73847384 73847749 THE1C 375 + 13 375 53270 30 14 11 13 14 0 10 23 38 123 2 1 136 chain 3730 chr15 101991189 + 73904459 73904502 MER63A 208 + 113 156 93403 43 chain 59329 chr15 101991189 + 73963022 73963760 MER4E 760 + 27 753 26556 77 0 6 109 0 1 149 11 0 75 1 0 162 0 1 51 20 12 83 chain 92751 chr15 101991189 + 73973578 73974985 LTR12C 1709 + 0 1702 19227 15 6 15 8 0 4 248 9 6 42 0 43 269 0 278 181 12 9 90 51 20 50 1 0 4 42 43 85 1 0 188 56 55 49 chain 94726 chr15 101991189 + 74052365 74053880 LTR12C 1709 + 0 1709 18940 24 9 18 8 0 1 198 55 56 33 0 43 83 15 10 245 0 118 234 0 47 97 20 13 54 20 1 15 94 93 177 18 28 26 13 10 77 chain 5058 chr15 101991189 + 74060802 74061009 L1M1 2793 + 665 847 85365 15 3 0 22 98 77 23 1 0 24 4 5 8 1 0 8 chain 19620 chr15 101991189 + 74248930 74249204 LTR71B 605 + 0 279 56886 85 2 0 44 18 23 21 0 2 104 chain 203525 chr15 101991189 + 74354539 74357344 HERVH-int 3825 + 0 2991 9588 333 1 0 76 6 3 6 0 2 37 27 301 22 66 0 45 1 0 249 2 10 14 4 6 25 1 4 93 12 0 3 16 0 68 0 2 5 12 10 117 9 0 152 28 27 461 19 24 874 7 8 14 chain 4366 chr15 101991189 + 74360920 74360989 MER41-int 2638 + 335 399 89081 26 0 2 30 7 0 6 chain 28999 chr15 101991189 + 74363502 74363867 MER57-int 2662 + 1973 2338 43320 74 1 0 86 0 1 204 chain 7724 chr15 101991189 + 74487564 74487687 Tigger1 2417 + 2220 2336 75555 27 7 4 14 4 0 71 chain 28984 chr15 101991189 + 74503346 74503654 AluYb8 318 + 1 309 43358 308 chain 3632 chr15 101991189 + 74508096 74508140 MER45A 178 + 124 168 94169 44 chain 16604 chr15 101991189 + 74644436 74644652 L1PA7 6471 + 6235 6457 60260 73 8 16 73 3 1 59 chain 19405 chr15 101991189 + 74708077 74708345 AluSq2 311 + 10 294 57124 123 28 44 117 chain 104267 chr15 101991189 + 74728292 74729832 SVA_A 1864 + 17 1864 17787 30 5 0 46 0 11 73 2 0 449 0 111 25 2 1 46 28 320 12 1 0 27 3 0 35 3 0 16 0 1 4 24 14 16 99 1 60 4 1 29 0 16 124 2 0 362 0 4 13 chain 24116 chr15 101991189 + 74766973 74767284 AluSx4 309 + 4 307 50623 234 6 0 55 2 0 14 chain 11237 chr15 101991189 + 74878220 74878365 LTR8 732 + 571 715 68188 75 1 0 69 chain 4254 chr15 101991189 + 74880801 74880860 LTR23 429 + 232 292 89801 45 1 2 13 chain 23286 chr15 101991189 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45 0 1 105 3 5 16 chain 12050 chr15 101991189 + 75398878 75399031 L1PA8 5853 + 5698 5849 66757 42 2 1 21 1 0 87 chain 4845 chr15 101991189 + 75418623 75418727 MLT1A1 405 + 295 390 86459 23 11 0 21 20 22 29 chain 124997 chr15 101991189 + 75480834 75482795 SVA_F 1814 + 335 1812 14702 366 0 40 147 1 0 26 47 0 34 3 18 21 0 1 46 0 1 36 0 1 13 0 1 24 0 1 22 44 0 43 1 0 11 79 0 26 51 0 4 1 0 391 320 0 204 chain 2260 chr15 101991189 + 75481382 75481421 SVA_F 1814 + 924 978 74330 6 0 1 16 1 15 16 chain 2536 chr15 101991189 + 75481620 75481664 SVA_F 1814 + 1134 1182 68801 9 0 1 7 0 1 24 2 4 2 chain 7078 chr15 101991189 + 75481720 75481798 SVA_F 1814 + 1011 1089 61986 78 chain 2964 chr15 101991189 + 75481839 75481875 SVA_F 1814 + 1001 1037 67844 10 1 0 17 0 1 8 chain 38041 chr15 101991189 + 75483705 75484199 LTR3B_ 500 + 0 498 36044 302 0 2 30 0 3 11 6 4 115 1 2 29 chain 150553 chr15 101991189 + 75502939 75505468 SVA_D 2077 + 338 2073 12313 558 14 18 8 0 1 24 11 0 20 211 0 122 0 3 144 484 0 152 0 1 2 21 0 10 41 0 68 38 0 210 0 3 391 chain 6877 chr15 101991189 + 75503574 75503688 SVA_D 2077 + 1067 1181 34664 114 chain 2452 chr15 101991189 + 75503688 75503715 SVA_D 2077 + 1308 1335 58889 27 chain 3578 chr15 101991189 + 75503738 75503785 SVA_D 2077 + 1182 1320 54226 38 4 95 5 chain 7420 chr15 101991189 + 75504051 75504174 SVA_D 2077 + 1363 1487 34664 25 0 1 4 10 9 80 0 1 4 chain 12664 chr15 101991189 + 75504209 75504535 SVA_D 2077 + 987 1109 32931 47 4 9 27 208 0 23 1 0 16 chain 4688 chr15 101991189 + 75504287 75504404 SVA_D 2077 + 1119 1236 56575 117 chain 1271 chr15 101991189 + 75504404 75504449 SVA_D 2077 + 960 1005 59681 45 chain 2482 chr15 101991189 + 75504449 75504478 SVA_D 2077 + 1105 1135 87691 25 0 1 4 chain 1593 chr15 101991189 + 75504720 75504761 SVA_D 2077 + 1262 1303 32931 41 chain 1476 chr15 101991189 + 75504829 75504867 SVA_D 2077 + 1371 1420 32931 17 0 1 4 7 17 10 chain 114421 chr15 101991189 + 75558504 75559788 SVA_C 1631 + 0 1631 16484 13 0 9 662 0 40 7 0 3 50 0 296 356 1 0 195 chain 24872 chr15 101991189 + 75589607 75590326 L1MA3 4352 + 3911 4347 49487 101 1 0 81 315 43 43 1 0 21 0 2 41 4 7 10 2 0 22 8 6 25 1 0 15 15 6 13 chain 6407 chr15 101991189 + 75613284 75613362 L1MB8 1703 + 942 1020 79645 78 chain 83111 chr15 101991189 + 75734638 75735588 LTR13A 966 + 0 966 20998 173 0 17 92 0 2 102 1 0 283 2 0 297 chain 124209 chr15 101991189 + 75741852 75743415 THE1A-int 1579 + 1 1579 14810 355 1 0 57 1 4 30 0 2 152 3 2 125 5 6 192 2 7 52 6 5 124 0 1 122 0 8 171 1 0 62 1 0 101 chain 24281 chr15 101991189 + 75743415 75743769 THE1A 353 + 0 353 50366 84 0 3 5 3 0 14 5 4 59 3 4 32 0 6 6 9 2 134 chain 8461 chr15 101991189 + 75749089 75749206 MER5A 189 + 1 112 73770 46 6 0 65 chain 6555 chr15 101991189 + 75809006 75809086 MER85 139 + 15 96 79143 27 0 1 53 chain 36518 chr15 101991189 + 75984372 75984794 L1PA7 6471 + 6045 6467 37069 422 chain 7788 chr15 101991189 + 76025498 76025592 L1M2c 2366 + 1734 1828 75398 94 chain 93291 chr15 101991189 + 76044306 76046080 L1MA3 4352 + 2935 4352 19144 33 0 1 103 1 0 10 2 1 49 0 3 36 317 0 108 32 3 19 0 1 40 0 1 44 18 17 35 0 3 159 0 1 8 10 9 12 0 15 259 2 0 44 5 7 133 64 36 54 1 0 23 0 2 56 3 2 18 1 3 5 1 0 26 1 0 14 1 0 5 5 2 17 chain 10721 chr15 101991189 + 76068493 76068819 MLT1A 405 + 36 389 69009 29 127 154 54 33 34 6 0 1 6 1 0 14 1 0 55 chain 11887 chr15 101991189 + 76110324 76110519 MER30 238 + 0 238 67042 107 4 0 7 25 45 23 1 28 28 chain 72775 chr15 101991189 + 76257363 76258180 L1PA3long 6157 + 5341 6156 23365 7 0 1 549 1 0 117 1 0 137 1 0 4 chain 20648 chr15 101991189 + 76263005 76263324 LTR14A 344 + 45 344 55563 7 0 3 57 38 7 139 6 14 72 chain 124948 chr15 101991189 + 76263527 76265190 HERVK14-int 1672 + 1 1665 14715 6 0 3 20 1 0 11 1 0 47 1 0 133 0 1 83 1 0 34 2 0 62 0 1 141 0 15 10 1 0 250 6 5 147 1 0 12 1 0 7 0 2 61 6 0 9 1 0 3 1 0 7 2 0 33 2 1 203 1 0 38 0 1 69 8 7 55 8 7 23 2 0 11 1 0 8 1 0 4 8 11 52 6 10 55 1 0 6 chain 25381 chr15 101991189 + 76269233 76269680 LTR14A 344 + 0 344 48651 53 73 0 59 38 7 152 0 1 72 chain 3559 chr15 101991189 + 76411351 76411395 Tigger4a 237 - 190 234 94761 44 chain 3671 chr15 101991189 + 76414925 76414987 LTR67B 553 + 458 522 93814 30 8 10 24 chain 96467 chr15 101991189 + 76484319 76485700 L1PA13 3608 + 2044 3516 18721 20 5 9 99 2 1 134 0 3 73 14 95 144 0 2 63 0 1 70 0 3 244 0 4 28 1 0 8 7 23 60 1 0 32 1 0 113 2 0 63 1 0 55 11 7 23 5 6 18 7 3 20 1 0 14 12 9 13 5 0 12 chain 36993 chr15 101991189 + 76502307 76502720 L1PA5 6144 + 5720 6132 36737 48 1 0 364 chain 75828 chr15 101991189 + 76505210 76506410 L1MA3 4352 + 3192 4352 22630 167 0 1 205 0 1 36 0 3 86 37 39 5 2 0 72 2 0 286 106 73 14 1 0 7 0 1 4 1 0 68 2 0 23 1 0 5 1 0 26 2 1 6 4 0 31 chain 112100 chr15 101991189 + 76509622 76511249 L1PB1 5432 + 3865 5427 16799 305 2 1 32 1 0 384 18 22 17 25 0 165 4 16 72 0 13 209 45 12 21 1 0 13 1 0 9 8 4 8 2 0 52 2 1 15 1 0 45 8 7 8 3 0 6 16 6 19 3 0 21 3 1 21 1 0 21 1 0 13 1 0 18 2 0 5 chain 193931 chr15 101991189 + 76536589 76538726 L1PA3long 6157 + 4018 6157 9933 214 1 0 1075 0 3 697 0 1 97 1 0 52 chain 9537 chr15 101991189 + 76549770 76549891 L1MA6 2487 + 1501 1624 71401 84 1 0 5 0 3 31 chain 30998 chr15 101991189 + 76590510 76590999 L1PB4 2604 + 2058 2552 41126 25 0 2 212 15 16 61 18 16 22 0 1 15 1 0 61 1 0 4 18 23 36 chain 527060 chr15 101991189 + 76592524 76598948 L1PA7 6471 + 0 6470 1954 18 0 1 393 0 1 290 7 8 310 1 0 1656 1 0 4 1 2 89 3 18 449 0 1 159 0 1 39 0 5 319 0 3 63 9 0 339 2 6 83 0 1 139 0 1 273 0 4 149 0 1 35 0 1 198 0 3 540 1 0 98 0 2 140 4 3 467 13 14 57 0 8 23 6 10 46 chain 36018 chr15 101991189 + 76612537 76613120 L1PA13 3608 + 2984 3541 37402 92 0 3 49 1 0 31 15 14 100 2 0 31 1 0 32 1 0 55 1 0 5 2 0 47 2 0 5 2 0 20 1 0 20 6 3 12 5 1 14 1 0 6 7 1 9 1 0 7 chain 41026 chr15 101991189 + 76640256 76640716 HERVK11D-int 613 + 153 613 33954 135 1 0 93 0 1 231 chain 77341 chr15 101991189 + 76640716 76641589 MER11D 897 + 0 897 22236 593 1 24 160 0 1 119 chain 3096 chr15 101991189 + 76683389 76683799 L1PA13 3608 + 218 595 98826 20 205 200 7 2 0 15 127 102 21 1 0 12 chain 66770 chr15 101991189 + 76704280 76705548 L1PA3long 6157 + 4902 6147 24755 328 21 0 588 2 0 329 chain 61816 chr15 101991189 + 76713119 76713789 L1PA3long 6157 + 5487 6157 25912 670 chain 19208 chr15 101991189 + 76729011 76729269 MLT2A1 477 + 154 407 57341 15 4 1 33 0 1 179 0 2 12 5 0 10 chain 77329 chr15 101991189 + 76732205 76733181 LTR13 1007 + 0 1007 22241 73 2 0 308 4 5 98 0 25 182 0 4 116 1 2 84 2 1 10 0 5 62 3 1 31 chain 19533 chr15 101991189 + 76736640 76736879 7SK 245 + 0 240 56980 189 5 6 45 chain 82470 chr15 101991189 + 76769029 76770364 L1PA6 6164 + 5192 6162 21139 38 0 1 85 326 0 99 0 1 33 0 1 100 39 0 604 3 0 8 chain 504929 chr15 101991189 + 76779925 76786038 L1PA6 6164 + 13 6162 2973 50 3 5 57 18 21 662 0 17 418 1 0 175 6 5 4 0 1 433 0 1 349 1 3 120 0 1 143 0 6 712 21 21 476 3 0 212 0 2 342 0 1 94 1 0 553 0 6 415 0 4 29 2 0 98 0 1 183 0 1 277 0 1 244 5 0 6 chain 3526 chr15 101991189 + 76799896 76799938 MER70A 477 + 340 382 95061 42 chain 183177 chr15 101991189 + 76818601 76820749 L1PA4 6152 + 0 6151 10429 278 0 1 740 0 1 95 2 3 50 1 3997 133 0 4 849 chain 38864 chr15 101991189 + 76826142 76826572 L1PA3long 6157 + 5727 6157 35459 430 chain 26005 chr15 101991189 + 76837789 76838212 L1PA15 4387 + 3899 4314 47710 34 1 0 36 12 12 23 0 4 96 1 0 26 1 0 53 4 3 13 10 6 12 1 0 39 17 14 44 chain 14299 chr15 101991189 + 76842042 76842232 MER2 342 + 84 279 63200 31 4 5 82 0 4 73 chain 174880 chr15 101991189 + 76844485 76847043 L1MA2 4263 + 1539 4097 10843 338 1 2 73 0 2 16 2 0 65 17 4 74 1 0 24 0 2 6 0 1 11 26 29 55 2 3 150 8 4 44 0 12 84 0 1 102 0 5 5 2 0 79 1 9 171 0 2 189 4 1 4 0 1 119 8 11 137 2 0 19 0 1 40 6 1 147 9 5 75 6 5 90 1 0 24 0 1 5 24 19 101 2 0 38 0 2 9 11 9 34 1 6 22 7 16 15 11 0 17 3 1 21 chain 28332 chr15 101991189 + 76854293 76854662 L1PREC2 3366 + 2405 2773 44369 15 0 1 57 1 0 245 0 1 23 7 5 21 chain 508027 chr15 101991189 + 76887184 76893333 L1PA6 6164 + 0 6162 2846 194 1 2 164 0 1 46 6 7 64 16 15 19 1 0 55 1 0 212 0 1 364 1 7 87 1 0 207 3 1 43 1 2 625 0 3 92 1 3 77 1 2 32 0 1 120 0 1 346 0 4 399 0 1 602 8 7 528 2 0 8 0 5 18 0 4 81 2 1 195 26 13 263 0 4 148 0 1 240 0 3 619 12 7 218 chain 102294 chr15 101991189 + 76899183 76900355 SVA_A 1864 + 21 1864 18036 169 1 2 387 0 666 185 0 4 430 chain 2909 chr15 101991189 + 76936124 76936315 MER2 342 + 29 211 100772 20 141 132 30 chain 25032 chr15 101991189 + 77135566 77135920 THE1B 368 + 0 368 49227 44 0 15 35 11 14 64 1 0 20 2 0 95 2 1 80 chain 36065 chr15 101991189 + 77135920 77136384 THE1B-int 1605 + 0 490 37373 171 0 1 4 1 0 116 5 6 132 1 26 34 chain 28734 chr15 101991189 + 77137842 77138196 THE1B 368 + 0 368 43739 44 0 15 113 1 0 196 chain 144664 chr15 101991189 + 77174674 77176257 L1PA3long 6157 + 4568 6152 12715 1354 0 1 229 chain 38253 chr15 101991189 + 77206838 77207256 L1PA2 6032 + 4591 5009 35874 418 chain 106349 chr15 101991189 + 77235214 77236693 THE1C-int 1605 + 27 1599 17513 69 0 57 17 3 0 115 5 10 28 9 35 81 11 18 38 1 2 126 0 2 78 1 0 10 18 18 28 5 0 19 12 12 246 0 1 274 7 9 82 1 0 127 0 2 68 chain 486304 chr15 101991189 + 77260664 77266269 L1PA3long 6157 + 1 6157 3506 93 0 526 84 8 15 699 2 13 8 0 1 19 0 1 865 0 1 189 0 6 662 1 0 505 2 0 125 1 2 81 0 2 421 1 2 1574 0 4 251 7 0 7 chain 139046 chr15 101991189 + 77270099 77271941 L1PA5 6144 + 3952 6144 13183 315 0 1 202 244 593 180 6 6 375 0 1 186 1 0 333 chain 233585 chr15 101991189 + 77271942 77275306 L1PB1 5432 + 2141 5423 8647 164 0 1 24 0 1 43 0 4 115 3 0 90 0 1 124 0 1 190 1 0 115 1 0 78 5 6 135 1 0 38 4 0 318 0 1 62 15 12 5 0 3 39 34 26 23 8 3 58 0 1 140 0 1 233 0 1 14 12 14 198 0 1 142 0 4 34 0 5 20 0 1 9 0 3 142 61 7 21 1 2 19 6 5 45 0 1 102 2 0 117 3 2 8 2 1 24 1 0 5 2 1 12 20 14 50 2 1 16 1 0 44 4 3 12 23 12 18 25 20 24 1 0 22 1 0 12 1 0 14 1 0 5 chain 6209 chr15 101991189 + 77277746 77278002 L1MC1 2226 + 1960 2184 80322 14 9 6 15 2 0 15 61 53 14 2 0 5 4 1 15 8 6 18 24 13 17 1 0 32 chain 194505 chr15 101991189 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375 41492 135 0 4 47 0 1 188 chain 4499 chr15 101991189 + 78178052 78178104 MIR 256 + 57 109 88329 52 chain 323666 chr15 101991189 + 78186020 78189832 L1PA3long 6157 + 2338 6157 6344 177 3 0 57 0 4 207 1 2 1812 0 1 561 0 5 740 1 0 253 chain 7959 chr15 101991189 + 78286902 78287056 L1MC2 1988 + 1708 1860 74978 32 34 36 71 6 2 11 chain 4890 chr15 101991189 + 78324943 78325034 MER81 114 + 32 114 86202 11 7 0 10 1 0 20 5 4 37 chain 17307 chr15 101991189 + 78356470 78356695 AluSg7 307 + 72 295 59449 198 12 10 15 chain 5906 chr15 101991189 + 78382306 78382375 MER52C 1267 + 14 83 81464 69 chain 4318 chr15 101991189 + 78521441 78521514 MADE1 96 + 5 96 89376 21 1 2 21 6 23 24 chain 2572 chr15 101991189 + 78530527 78530606 MER3 215 + 27 113 103239 25 21 27 10 6 7 17 chain 22226 chr15 101991189 + 78574138 78574398 AluSp 311 + 40 300 53513 260 chain 545395 chr15 101991189 + 78607584 78613730 L1PA4 6152 + 2 6151 1012 578 1 0 23 0 6 127 1 0 98 17 0 402 1 0 209 0 4 905 0 2 227 0 2 674 0 5 402 0 1 501 0 1 185 0 4 530 1 0 122 1 0 1141 chain 6660 chr15 101991189 + 78680341 78680516 Tigger4a 237 + 7 201 78774 21 17 0 12 14 31 10 13 0 42 0 35 20 10 0 10 0 7 6 chain 540255 chr15 101991189 + 78719836 78725850 L1PA3long 6157 + 4 6157 1324 149 13 14 609 0 128 344 0 1 958 0 2 1486 1 0 598 0 2 65 0 4 1139 0 1 637 0 1 15 chain 7870 chr15 101991189 + 78741938 78742055 MER5A 189 + 1 112 75196 44 12 6 61 chain 3326 chr15 101991189 + 78822625 78822662 MIRc 230 + 173 210 96796 37 chain 115927 chr15 101991189 + 78846690 78848058 LTR12C 1709 + 0 1698 16250 801 0 316 107 0 4 143 0 7 188 4 7 125 chain 3716 chr15 101991189 + 78860561 78860601 tRNA-Lys-AAG 49 + 0 40 93497 40 chain 15741 chr15 101991189 + 78870874 78871066 MER107 203 + 4 203 61364 141 4 0 12 0 11 35 chain 7755 chr15 101991189 + 78958665 78958849 LTR39 781 + 264 473 75475 14 16 39 13 6 8 30 36 37 63 1 0 5 chain 6580 chr15 101991189 + 78968828 78969068 MER31B 477 + 252 387 79039 17 117 13 32 20 19 54 chain 38212 chr15 101991189 + 79014068 79015096 L1PB1 5432 + 4806 5427 35901 7 7 0 31 16 5 193 0 6 56 0 1 9 3 0 26 1 0 6 1 0 12 19 13 48 1 0 12 6 5 45 1 0 15 3 0 6 16 6 19 367 4 17 2 0 22 1 0 21 1 0 13 1 0 19 1 0 4 chain 6329 chr15 101991189 + 79124551 79124875 MLT1H2 457 + 89 357 79900 77 228 172 19 chain 11065 chr15 101991189 + 79228781 79228949 MER20 218 + 38 199 68460 44 9 6 68 8 4 39 chain 25422 chr15 101991189 + 79234619 79234974 THE1C 375 + 2 356 48598 85 3 4 16 8 7 38 0 1 34 2 0 169 chain 5320 chr15 101991189 + 79259227 79259403 MER5A 189 + 0 189 84099 26 0 9 38 95 99 17 chain 327821 chr15 101991189 + 79272632 79276191 L1PA2 6032 + 2469 6032 6253 2713 0 4 846 chain 3912 chr15 101991189 + 79321766 79321833 MIRb 242 + 69 174 92034 38 11 49 18 chain 80949 chr15 101991189 + 79338483 79339474 LTR13 1007 + 0 1007 21445 264 0 1 116 2 3 66 0 1 71 8 12 122 0 10 33 2 0 116 0 1 191 chain 35792 chr15 101991189 + 79351545 79352208 L1PB1 5432 + 4786 5422 37532 11 1 0 6 3 4 152 0 1 5 2 1 127 11 16 5 1 0 28 3 2 12 18 12 51 1 0 10 8 7 45 1 0 15 1 0 4 63 46 24 1 0 22 1 0 12 1 0 18 chain 4178 chr15 101991189 + 79361383 79361470 L1PB1 5432 + 5108 5214 90270 6 3 0 24 1 0 8 1 0 12 11 35 21 chain 4946 chr15 101991189 + 79361478 79361547 L1PB1 5432 + 5221 5289 85904 15 1 0 34 0 1 10 1 0 8 chain 2898 chr15 101991189 + 79361622 79361661 L1PB1 5432 + 5353 5391 100850 20 1 0 18 chain 22992 chr15 101991189 + 79362544 79362909 THE1B 368 + 0 368 52373 15 2 0 32 17 23 99 1 0 11 0 1 9 14 11 9 0 4 18 1 0 9 1 0 65 1 0 5 0 1 56 chain 8641 chr15 101991189 + 79501789 79501956 MLT2B4 540 + 355 533 73371 16 3 4 25 2 0 5 0 2 51 14 29 7 1 0 11 4 0 28 chain 74941 chr15 101991189 + 79557839 79558697 L1PA5 6144 + 5273 6126 22857 18 0 4 596 1 0 109 0 3 76 11 0 47 chain 39089 chr15 101991189 + 79560954 79561450 LTR10D 510 + 0 510 35293 70 12 7 14 0 17 58 1 2 94 0 1 247 chain 35959 chr15 101991189 + 79637936 79638397 LTR46 455 + 0 454 37436 187 2 0 121 1 0 104 4 0 42 chain 108195 chr15 101991189 + 79648443 79649622 L1PA3long 6157 + 3806 4986 17290 834 0 1 345 chain 27245 chr15 101991189 + 79669619 79669911 AluYa5 310 + 0 293 45903 108 0 1 184 chain 340806 chr15 101991189 + 79710987 79714854 L1PA3long 6157 + 2037 6142 6054 118 0 1 1035 1 0 578 1 4 898 5 6 244 25 259 962 chain 110665 chr15 101991189 + 79714929 79716480 L1PA5 6144 + 4900 6127 16988 397 324 0 830 chain 6318 chr15 101991189 + 79744654 79744727 tRNA-Cys-TGY 72 + 0 72 79944 15 1 0 57 chain 6124 chr15 101991189 + 79836227 79836370 MER5A1 166 + 1 135 80635 16 38 38 32 9 0 48 chain 102375 chr15 101991189 + 79925931 79927224 LTR12C 1709 + 0 1702 18021 80 3 4 215 0 2 144 10 47 158 0 278 184 1 0 4 4 2 106 11 4 212 0 102 79 5 4 77 chain 23938 chr15 101991189 + 79951158 79951442 AluSp 311 + 0 291 50885 20 3 10 261 chain 116014 chr15 101991189 + 80016339 80017800 LTR12C 1709 + 0 1709 16234 190 9 10 138 19 62 61 5 6 209 0 200 348 0 4 393 5 4 84 chain 3065 chr15 101991189 + 80017800 80017832 LTR12C 1709 + 1677 1709 99144 32 chain 3111 chr15 101991189 + 80028927 80028963 MER117 194 + 53 89 98692 36 chain 10064 chr15 101991189 + 80084299 80084444 Tigger4a 237 + 75 219 70274 73 2 0 22 2 3 46 chain 5687 chr15 101991189 + 80085789 80085919 Tigger3a 397 + 1 191 82403 48 49 109 33 chain 10367 chr15 101991189 + 80145131 80145294 L1MA8 2339 + 537 682 69674 41 19 1 103 chain 31288 chr15 101991189 + 80239309 80239723 MLT2A1 477 + 0 477 40904 133 0 15 21 1 5 209 0 41 25 9 8 10 0 4 6 chain 24702 chr15 101991189 + 80272620 80272989 THE1C 375 + 0 364 49730 114 9 16 64 26 3 8 0 11 134 1 0 4 0 1 9 chain 24569 chr15 101991189 + 80310012 80310296 L1PA7 6471 + 6162 6442 49906 235 4 0 45 chain 3994 chr15 101991189 + 80323068 80323114 MADE1 96 + 50 96 91484 46 chain 16782 chr15 101991189 + 80382957 80383279 L1MA3 4352 + 4031 4328 60054 58 42 18 6 1 0 37 0 1 9 8 15 58 4 0 19 0 1 5 2 0 24 1 0 6 1 0 28 1 0 12 chain 98104 chr15 101991189 + 80389589 80391551 L1PA8A 6298 + 5066 6291 18517 8 0 1 264 1 2 138 15 13 23 528 0 116 0 5 300 219 0 270 0 5 80 chain 4169 chr15 101991189 + 80420367 80420418 MER47B 469 - 178 229 90325 51 chain 41889 chr15 101991189 + 80608188 80608732 MLT2A2 560 + 0 560 33428 180 1 0 222 1 12 36 0 1 54 0 1 44 0 4 6 chain 12514 chr15 101991189 + 80612997 80613200 MER30 238 + 0 236 65962 15 4 14 68 16 35 53 5 8 17 0 1 25 chain 93790 chr15 101991189 + 80647194 80648380 SVA_D 2077 + 275 2076 19066 265 0 40 101 0 37 130 6 50 14 1 0 21 23 520 244 1 3 362 4 0 14 chain 21522 chr15 101991189 + 80656491 80656857 THE1B 368 + 0 368 54479 111 0 3 6 17 15 42 63 66 73 1 0 6 1 0 46 chain 45802 chr15 101991189 + 80674799 80675353 MER41A 554 + 0 554 31166 104 1 0 75 0 1 374 chain 2875 chr15 101991189 + 80676100 80676134 MER21B 843 + 771 805 101039 34 chain 8762 chr15 101991189 + 80771409 80771523 Tigger3a 397 + 140 288 73077 20 1 35 93 chain 2927 chr15 101991189 + 80852453 80852497 MADE1 96 + 1 46 100614 23 1 2 20 chain 12781 chr15 101991189 + 80865570 80865764 MER30B 195 + 0 192 65471 94 6 1 13 1 7 41 8 5 31 chain 6095 chr15 101991189 + 80918385 80918479 MER20 218 + 42 136 80749 9 4 0 30 1 5 50 chain 11712 chr15 101991189 + 80954782 80954947 MER30 238 + 46 230 67382 60 3 0 7 2 25 19 1 0 73 chain 356145 chr15 101991189 + 80961775 80965960 L1PA6 6164 + 1933 6162 5844 398 1 2 255 0 3 207 0 2 310 0 2 128 13 17 8 0 3 714 0 2 262 0 1 4 1 0 151 0 4 136 0 9 329 0 11 593 0 3 675 chain 21385 chr15 101991189 + 81045593 81045970 THE1D 372 + 2 372 54654 54 10 1 17 3 0 6 19 23 63 32 34 20 5 4 148 chain 94748 chr15 101991189 + 81090877 81091922 L1PA3long 6157 + 5111 6149 18939 889 7 0 149 chain 128467 chr15 101991189 + 81158435 81159956 LTR12C 1709 + 0 1709 14224 39 4 0 412 1 2 13 1 0 4 0 1 207 0 159 275 1 0 5 3 1 106 0 4 92 1 5 17 0 29 83 1 0 166 6 5 84 chain 10348 chr15 101991189 + 81204630 81204754 L1PA4 6152 + 6034 6152 69704 112 6 0 6 chain 22650 chr15 101991189 + 81364450 81364691 L1HS 6032 + 5787 6028 52900 241 chain 7326 chr15 101991189 + 81409296 81409575 LTR12 884 + 171 397 76578 10 1 0 24 49 0 24 114 113 36 2 0 19 chain 13409 chr15 101991189 + 81414265 81414909 LTR12D 1347 + 587 1068 64456 77 148 47 41 258 201 67 36 31 17 chain 3625 chr15 101991189 + 81414345 81414458 LTR12D 1347 + 477 584 94226 35 61 55 17 chain 35794 chr15 101991189 + 81456820 81457383 LTR12F 595 + 0 595 37530 103 10 5 22 25 0 13 11 42 21 0 9 161 2 3 20 1 0 80 0 5 10 0 11 12 0 4 10 6 8 56 chain 32809 chr15 101991189 + 81467740 81468162 L1PA8A 6298 + 5870 6290 39661 19 2 1 116 1 0 284 chain 18366 chr15 101991189 + 81540379 81540803 L1MA4 2864 + 2431 2809 58280 18 11 7 38 8 9 114 10 12 39 9 6 18 100 60 14 2 0 43 chain 454938 chr15 101991189 + 81581586 81586989 L1PA6 6164 + 0 6160 4262 88 0 735 249 2 1 54 7 8 392 0 2 802 1 2 48 0 4 1272 3 0 5 1 4 1054 1 8 434 1 2 27 0 1 120 0 4 429 4 6 409 chain 22862 chr15 101991189 + 81627496 81627762 L1PA6 6164 + 4413 4679 52556 266 chain 20092 chr15 101991189 + 81627762 81627993 L1PA6 6164 + 4680 4911 56265 231 chain 103283 chr15 101991189 + 81627994 81629221 L1PA6 6164 + 4925 6158 17919 389 1 4 80 0 1 458 3 4 113 0 1 183 chain 15028 chr15 101991189 + 81629299 81629633 L1PB1 5432 + 5114 5417 62231 24 1 0 6 1 0 12 6 2 10 2 0 49 21 19 45 1 0 15 3 0 6 1 0 9 8 0 15 3 1 5 1 0 14 2 0 17 8 7 21 1 0 13 1 0 13 chain 233163 chr15 101991189 + 81678583 81681981 L1PA13 3608 + 113 3488 8660 23 10 7 21 2 1 13 53 40 64 11 9 125 1 0 12 1 0 17 2 0 7 2 0 6 7 5 18 1 0 19 3 1 15 2 0 17 1 0 40 0 1 57 2 0 410 1 0 65 2 1 5 0 1 8 0 1 57 40 2 11 0 15 86 0 3 70 1 0 24 8 8 37 4 8 126 5 43 335 1 0 14 0 4 62 1 2 377 1 3 41 10 9 102 0 1 19 0 1 31 7 0 87 1 2 107 0 1 323 2 1 9 0 1 16 15 14 77 0 4 19 3 1 61 1 0 20 3 0 35 9 5 42 18 14 13 1 0 23 chain 3804 chr15 101991189 + 81679683 81679723 L1PA13 3608 - 2383 2423 90238 40 chain 550291 chr15 101991189 + 81697165 81703174 L1PA2 6032 + 2 6032 721 14 0 1 1708 0 5 352 1 0 496 1 3 482 1 0 2063 0 9 44 1 0 5 0 1 227 0 2 556 0 4 58 chain 30322 chr15 101991189 + 81703184 81703604 L1PA3long 6157 + 5774 6155 41739 49 0 1 288 2 8 7 46 0 28 chain 6559 chr15 101991189 + 81709686 81709759 L1PB3 3668 + 3402 3475 79123 73 chain 97101 chr15 101991189 + 81713308 81714971 L1PA4 6152 + 4146 6146 18649 205 0 4 145 570 904 371 1 0 371 chain 24701 chr15 101991189 + 81721200 81721586 THE1D 372 + 2 372 49735 49 29 0 21 0 10 68 0 3 5 8 5 21 11 14 174 chain 557902 chr15 101991189 + 81730280 81736308 L1PA2 6032 + 0 6030 249 3086 0 1 760 0 1 2182 chain 13055 chr15 101991189 + 81738353 81738556 L1PA8 5853 + 5654 5853 65017 16 20 18 52 2 1 19 1 0 93 chain 5267 chr15 101991189 + 81759486 81759548 MER51A 677 + 0 62 84353 62 chain 38680 chr15 101991189 + 81759548 81760011 LTR2 463 + 0 463 35578 80 2 1 145 1 2 235 chain 21053 chr15 101991189 + 81779688 81779953 LTR8 732 + 0 265 55058 265 chain 28494 chr15 101991189 + 81791495 81791881 L1PA8 5853 + 5474 5853 44136 90 1 0 41 9 7 49 0 1 16 2 1 13 2 0 48 2 1 21 1 0 91 chain 553825 chr15 101991189 + 81797930 81803957 L1PA2 6032 + 1 6026 493 256 1 0 1825 1 0 3944 chain 235690 chr15 101991189 + 81821801 81824527 L1PA5 6144 + 3232 5970 8579 47 1 0 223 0 1 175 4 0 666 0 6 130 0 5 99 1 0 42 1 0 1003 0 7 334 chain 12493 chr15 101991189 + 81857550 81857911 L1MB3 1562 + 1214 1551 65997 128 173 150 29 8 7 23 chain 556954 chr15 101991189 + 81870667 81876699 L1PA2 6032 + 0 6032 299 5179 1 0 94 0 1 758 chain 30389 chr15 101991189 + 81917834 81918194 THE1D-int 1627 + 23 383 41685 360 chain 33878 chr15 101991189 + 81964862 81965315 LTR12F 595 + 0 595 38801 25 0 1 74 0 12 23 4 0 7 0 2 14 1 67 61 0 64 51 0 1 193 chain 24070 chr15 101991189 + 81979316 81979656 THE1B 368 + 2 349 50700 17 0 1 53 1 3 93 1 0 29 9 16 18 1 0 8 1 0 109 chain 442807 chr15 101991189 + 81995166 82000000 L1HS 6032 + 0 4835 4520 3086 0 1 1748 chain 110732 chr15 101991189 + 82000000 82001196 L1PA2 6032 + 4835 6031 16972 1196 chain 20088 chr15 101991189 + 82131565 82131807 AluSp 311 + 57 297 56272 75 2 0 165 chain 32387 chr15 101991189 + 82288403 82288769 L1PA4 6152 + 5792 6150 40048 104 8 0 254 chain 3251 chr15 101991189 + 82296009 82296053 Charlie4a 502 + 344 387 97475 5 1 0 38 chain 18793 chr15 101991189 + 82358560 82358780 L1PA7 6471 + 6243 6461 57790 42 2 0 176 chain 7343 chr15 101991189 + 82363577 82363702 MER30 238 + 92 230 76538 12 2 0 6 4 0 7 9 28 85 chain 27054 chr15 101991189 + 82456951 82457342 MLT2A1 477 + 7 391 46191 49 10 8 74 1 0 4 0 1 10 4 0 16 0 4 151 2 1 60 4 0 6 chain 9928 chr15 101991189 + 82478252 82478369 LTR15 485 + 349 475 70569 102 0 9 15 chain 28550 chr15 101991189 + 82534662 82535021 L1PA5 6144 + 5783 6143 44034 163 1 0 43 4 11 135 5 0 8 chain 56543 chr15 101991189 + 82669208 82671000 L1MA3 4352 + 2212 3528 27411 65 0 3 33 1 0 53 0 4 35 0 2 16 1004 515 329 0 4 6 0 5 24 1 0 81 6 3 138 chain 213232 chr15 101991189 + 82702776 82705672 HERVH-int 3825 + 0 2991 9231 89 2 1 191 9 11 41 2 1 71 21 20 31 13 132 16 126 146 28 1 0 145 0 1 259 8 0 38 53 26 184 9 0 655 4 9 254 0 4 345 0 1 76 0 2 12 11 0 202 chain 88153 chr15 101991189 + 82716201 82717253 MER11C 1089 + 0 1073 20021 22 0 1 197 0 5 17 10 11 60 0 4 248 4 3 24 0 1 83 1 0 238 2 13 146 chain 27086 chr15 101991189 + 82764133 82764849 MER51B 395 + 0 387 46143 57 58 24 168 1 2 64 296 0 72 chain 12020 chr15 101991189 + 82778237 82778447 L1MB1 2102 + 1797 2003 66817 75 3 0 5 12 14 5 1 0 29 17 15 63 chain 72046 chr15 101991189 + 82865660 82866545 THE1B-int 1605 + 701 1593 23526 273 0 1 45 0 1 107 2 1 295 0 4 57 1 3 105 chain 35462 chr15 101991189 + 82939815 82940228 L1PA5 6144 + 5732 6144 37746 274 1 0 138 chain 34649 chr15 101991189 + 82975079 82975574 L1MA2 4263 + 3627 4112 38255 35 1 0 98 0 3 46 3 0 131 0 2 14 11 9 93 19 11 35 1 0 8 chain 55956 chr15 101991189 + 83030585 83032514 L1PB2 3958 + 3034 3838 27574 64 0 5 204 2 0 43 0 4 6 0 3 11 8 0 63 834 14 9 0 3 90 5 1 63 1 0 44 304 0 20 1 0 71 2 0 18 0 2 66 chain 36435 chr15 101991189 + 83031361 83031788 L1PA5 6144 + 5717 6144 37118 427 chain 3557 chr15 101991189 + 83095513 83095558 U7 62 + 0 48 94777 40 0 3 5 chain 4463 chr15 101991189 + 83141747 83141802 Charlie1a 1436 + 682 738 88541 45 0 1 10 chain 114818 chr15 101991189 + 83169818 83171684 L1PA16 3655 + 1841 3534 16409 29 1 0 200 0 1 104 4 6 396 12 11 86 2 1 45 2 0 5 0 2 16 1 2 68 2 0 85 10 0 24 1 0 46 26 36 69 229 58 71 2 0 78 13 11 68 0 4 171 chain 10394 chr15 101991189 + 83173307 83173436 MER47A 366 + 166 295 69633 129 chain 332621 chr15 101991189 + 83221540 83225415 L1P1 4361 + 4 3910 6176 940 0 4 1264 0 26 76 2 1 833 7 9 753 chain 11698 chr15 101991189 + 83236929 83237075 AluYk4 311 + 139 298 67400 47 0 15 92 2 0 5 chain 10058 chr15 101991189 + 83239328 83239472 MER30 238 + 67 230 70286 40 4 21 45 1 3 54 chain 30947 chr15 101991189 + 83330807 83331264 LTR7B 505 + 0 505 41177 105 0 10 56 10 24 7 1 0 33 30 17 59 0 41 89 14 13 26 2 0 25 chain 550236 chr15 101991189 + 83383651 83389616 L1PA2 6032 + 3 6032 725 3163 3 67 2799 chain 19665 chr15 101991189 + 83497295 83497574 LTR3A 482 + 165 442 56838 73 2 1 27 2 0 20 0 1 102 0 1 6 11 10 36 chain 20618 chr15 101991189 + 83510910 83511154 L1PA5 6144 + 5902 6142 55610 233 4 0 7 chain 84385 chr15 101991189 + 83661665 83662582 L1PA2 6032 + 5111 6031 20738 776 0 3 141 chain 127263 chr15 101991189 + 83701824 83703396 THE1A-int 1579 + 0 1578 14390 160 11 12 659 0 5 742 chain 26839 chr15 101991189 + 83743259 83743542 AluYb8 318 + 28 311 46489 283 chain 131040 chr15 101991189 + 83777981 83780128 L1PA13 3608 + 113 1922 13924 23 5 2 25 1 0 14 3 0 24 27 17 56 19 17 43 9 0 5 0 1 86 6 5 13 3 1 6 0 2 28 1 0 17 10 9 9 2 0 19 1 0 43 0 4 49 9 7 320 1 0 44 0 1 50 1 0 45 9 10 8 0 3 35 0 1 359 316 0 334 0 1 10 0 5 39 1 0 19 chain 461882 chr15 101991189 + 83860680 83865961 L1PA4 6152 + 0 5342 4081 465 33 61 187 0 15 315 1 3 280 0 3 105 1 0 1274 0 5 134 0 1 335 1 0 68 0 3 1054 0 1 355 0 1 638 1 5 34 chain 535255 chr15 101991189 + 83962720 83969154 L1PA7 6471 + 0 6461 1609 96 1 2 246 1 0 59 1 2 80 1 12 260 5 6 526 13 4 12 5 0 383 5 6 36 0 1 116 0 1 283 6 7 494 10 0 265 1 2 461 0 1 141 1 0 117 0 6 266 1 0 111 2 0 348 0 3 398 0 1 31 4 0 731 0 1 105 0 7 85 0 13 269 0 3 102 1 7 355 chain 105561 chr15 101991189 + 84042419 84043645 L1P1 4361 + 5 1236 17612 483 5 10 738 chain 26633 chr15 101991189 + 84043645 84043942 L1PA4 6152 + 3930 4227 45655 297 chain 170621 chr15 101991189 + 84043942 84045852 L1PA4 6152 + 4229 6143 11076 1321 0 5 199 1 0 389 chain 32636 chr15 101991189 + 84070014 84070463 MER4A1 472 + 0 472 39826 225 1 22 23 4 5 25 17 18 154 chain 463389 chr15 101991189 + 84072813 84078536 L1PA6 6164 + 0 6162 4039 63 1 2 23 0 735 640 0 4 487 1 0 259 0 2 110 5 0 204 2 0 50 2 0 217 0 2 923 0 1 66 1 0 4 0 1 811 0 1 221 305 0 405 0 1 37 0 3 22 1 5 9 0 3 704 9 10 131 4 0 6 chain 5308 chr15 101991189 + 84085575 84085660 L1MC2 1988 + 1806 1887 84156 39 12 8 34 chain 9356 chr15 101991189 + 84205648 84205764 LTR15 485 + 349 475 71797 83 0 1 18 0 9 15 chain 9356 chr15 101991189 + 84320199 84320315 LTR15 485 + 349 475 71796 83 0 1 18 0 9 15 chain 18915 chr15 101991189 + 84446924 84447144 L1PA7 6471 + 6243 6461 57626 39 2 0 179 chain 77876 chr15 101991189 + 84556301 84557198 L1PA5 6144 + 5196 6128 22123 98 1 0 16 0 21 674 0 15 108 chain 34499 chr15 101991189 + 84557215 84557667 LTR15 485 + 23 475 38354 16 22 20 220 1 5 155 3 0 17 0 1 18 chain 101775 chr15 101991189 + 84672274 84673431 SVA_D 2077 + 42 1740 18090 345 0 3 152 0 40 308 0 396 16 12 111 30 0 2 9 0 1 285 chain 3207 chr15 101991189 + 84717622 84717658 L1MB8 1703 + 1152 1188 97816 36 chain 16069 chr15 101991189 + 84794057 84794240 L1PA7 6471 + 6276 6459 60933 183 chain 2775 chr15 101991189 + 84908999 84909029 Arthur1B 1073 + 69 99 101795 30 chain 25363 chr15 101991189 + 84965017 84965358 THE1C 375 + 0 336 48682 25 2 0 32 0 1 84 1 0 4 13 9 26 0 1 154 chain 16242 chr15 101991189 + 85006085 85006285 L1PA3long 6157 + 5962 6157 60702 40 0 7 134 12 0 14 chain 102219 chr15 101991189 + 85011591 85012708 L1PA3long 6157 + 5041 6157 18041 266 1 0 850 chain 20574 chr15 101991189 + 85065274 85065495 L1PA2 6032 + 5811 6032 55674 221 chain 7564 chr15 101991189 + 85158746 85158842 MLT1B 390 + 294 389 75945 35 1 0 60 chain 10610 chr15 101991189 + 85163321 85163454 MLT1B 390 + 230 363 69209 133 chain 2938 chr15 101991189 + 85173227 85173258 MLT1A 405 + 311 342 100519 31 chain 26971 chr15 101991189 + 85188973 85189364 MLT2A1 477 + 7 391 46310 49 10 8 74 1 0 4 0 1 10 4 0 16 0 4 151 2 1 60 4 0 6 chain 9487 chr15 101991189 + 85210247 85210363 LTR15 485 + 349 475 71500 83 0 1 18 0 9 15 chain 32223 chr15 101991189 + 85281723 85282225 MLT2A1 477 + 7 477 40166 51 8 1 60 0 1 48 1 5 155 0 2 65 10 0 7 6 0 8 6 0 6 2 0 9 12 0 8 3 7 37 chain 6020 chr15 101991189 + 85318970 85319038 L1MA4 2864 + 1635 1703 80999 68 chain 25296 chr15 101991189 + 85319045 85319334 AluSp 311 + 8 297 48789 289 chain 555901 chr15 101991189 + 85433963 85439965 L1PA2 6032 + 2 6014 365 129 0 4 1143 0 5 1677 2 0 729 0 1 120 0 3 1366 2 1 834 chain 27153 chr15 101991189 + 85738584 85738868 AluYb8 318 + 28 312 46038 284 chain 5052 chr15 101991189 + 85796538 85796620 LTR12_ 688 + 115 180 85404 23 18 1 41 chain 3387 chr15 101991189 + 85799485 85799543 MER90a 614 + 71 130 96215 13 7 8 38 chain 35284 chr15 101991189 + 85800812 85801274 LTR2 463 + 0 463 37837 368 0 1 4 24 25 9 1 0 56 chain 6533 chr15 101991189 + 85810732 85810880 MER44B 551 + 376 523 79223 58 49 50 6 0 1 16 3 0 16 chain 36062 chr15 101991189 + 85863311 85863787 L1PA8 5853 + 5383 5853 37376 181 1 0 45 2 0 67 4 3 9 14 13 38 3 2 112 chain 53990 chr15 101991189 + 85882646 85883236 L1PA3long 6157 + 4520 5110 28231 590 chain 29745 chr15 101991189 + 85901878 85902200 AluYb9 318 + 0 318 42316 126 4 0 192 chain 2993 chr15 101991189 + 85916053 85916085 L1MC2 1988 + 1945 1977 99899 32 chain 26587 chr15 101991189 + 85917839 85918193 THE1B 368 + 0 368 46851 40 0 15 117 10 9 159 0 3 7 3 0 18 chain 30327 chr15 101991189 + 85921398 85921974 L1PB1 5432 + 4838 5411 41733 148 0 1 7 4 3 82 19 30 5 1 0 24 1 0 9 16 11 11 7 5 46 2 1 12 11 10 38 1 0 7 22 20 14 12 10 14 2 0 24 1 0 4 0 3 15 0 3 9 1 0 7 chain 18970 chr15 101991189 + 85957425 85957699 AluSc 308 + 9 283 57581 37 14 22 50 2 0 5 7 1 159 chain 27539 chr15 101991189 + 86008665 86009042 L1PA8 5853 + 5471 5847 45529 51 0 6 36 1 0 45 2 0 69 2 1 8 5 4 53 2 1 15 1 0 87 chain 24025 chr15 101991189 + 86020828 86021095 L1PA3long 6157 + 5890 6157 50762 267 chain 464712 chr15 101991189 + 86147143 86153651 L1PA6 6164 + 0 6147 4001 237 0 2 11 17 16 22 0 2 170 0 3 55 0 2 47 1 0 392 3 5 182 7 9 85 1 4 1089 0 1 186 0 1 668 0 1 84 0 4 228 0 3 10 0 1 181 0 4 94 869 460 98 0 8 273 0 1 13 2 1 151 0 4 463 6 8 33 0 4 84 1 0 553 8 10 184 chain 32984 chr15 101991189 + 86150914 86151300 L1PA3long 6157 + 5757 6147 39528 66 0 1 182 1 4 137 chain 105353 chr15 101991189 + 86184691 86185904 L1PA5 6144 + 4538 6132 17635 208 0 369 31 0 5 87 0 2 15 5 6 36 0 4 831 chain 506391 chr15 101991189 + 86419162 86425546 L1PA7 6471 + 0 6467 2917 97 10 4 63 0 5 41 1 3 190 4 0 15 11 12 176 1 0 8 0 1 273 1 0 430 0 1 30 4 6 42 6 9 156 0 1 26 0 3 364 21 18 107 1 2 58 0 1 26 6 12 44 0 1 201 0 3 202 1 3 255 0 4 499 1 2 43 15 20 46 1 0 19 3 1 247 0 8 230 0 1 129 0 11 160 0 38 13 1 2 198 14 15 93 0 4 281 3 4 134 6 0 453 1 0 4 2 3 62 2 0 548 0 1 305 chain 530971 chr15 101991189 + 86474096 86480236 L1PA5 6144 + 0 6144 1789 124 77 77 664 0 1 1029 6 0 1269 1 0 42 0 1 697 0 1 1048 0 1 340 0 3 234 5 0 360 1 0 185 0 10 58 chain 557650 chr15 101991189 + 86528094 86534125 L1PA2 6032 + 0 6032 264 3921 0 1 2110 chain 116465 chr15 101991189 + 86577010 86578566 THE1B-int 1605 + 27 1605 16139 135 10 11 257 0 25 177 69 65 24 7 8 146 5 4 726 chain 53706 chr15 101991189 + 86582391 86583022 L1PA4 6152 + 5527 6152 28322 17 17 10 101 0 1 496 chain 3104 chr15 101991189 + 86612248 86612283 MER34A1 583 + 0 35 98766 35 chain 110870 chr15 101991189 + 86703852 86705275 L1PA8 5853 + 4407 5826 16957 296 0 1 72 0 1 15 0 1 213 13 11 38 0 5 144 5 6 352 1 0 38 2 1 7 2 0 76 1 0 4 7 3 49 2 1 14 6 5 66 chain 20641 chr15 101991189 + 86718218 86718474 L1PA5 6144 + 5814 6072 55572 165 0 2 91 chain 4064 chr15 101991189 + 86718481 86718528 L1PA5 6144 + 6081 6128 90991 47 chain 188177 chr15 101991189 + 86720742 86722850 L1PA4 6152 + 3227 5337 10201 36 0 4 739 6 0 1291 0 4 36 chain 21733 chr15 101991189 + 86730084 86730450 L1PA16 3655 + 2546 2938 54188 16 9 14 46 21 22 8 0 15 7 1 0 129 0 7 75 1 2 6 1 0 10 10 9 26 chain 154314 chr15 101991189 + 86819378 86821328 L1PA7 6471 + 4551 6461 12094 118 24 18 233 0 1 691 2 0 5 37 1 100 9 8 129 0 1 274 0 1 71 2 4 38 0 2 62 8 0 9 0 7 5 1 0 132 chain 27467 chr15 101991189 + 86833280 86833635 THE1A 353 + 0 353 45613 109 5 4 85 1 0 155 chain 41455 chr15 101991189 + 86899797 86900331 MLT2A2 560 + 15 560 33705 381 1 0 10 8 19 64 1 2 69 chain 19995 chr15 101991189 + 86936529 86936844 L1PA14 3548 + 3137 3440 56393 84 1 0 82 2 1 27 1 0 12 6 2 32 6 4 12 1 0 5 1 0 16 1 0 26 chain 44068 chr15 101991189 + 86939093 86939637 MLT2A2 560 + 0 560 32102 42 0 1 363 0 11 131 0 4 8 chain 32838 chr15 101991189 + 86965609 86965999 L1PA7 6471 + 6066 6456 39637 115 2 1 102 0 1 171 chain 8501 chr15 101991189 + 87015084 87015339 MLT2B3 573 + 243 509 73679 47 92 42 16 17 67 25 10 21 48 chain 64237 chr15 101991189 + 87020221 87021078 L1PA10 4194 + 3305 4161 25363 340 14 18 313 0 3 93 4 0 44 3 0 34 1 0 11 chain 382526 chr15 101991189 + 87021925 87027119 L1PB1 5432 + 79 5416 5435 52 8 10 152 20 0 212 7 220 288 0 1 59 10 6 218 5 0 5 1 2 31 1 0 58 1 0 9 8 0 101 0 1 370 3 1 425 7 9 185 4 1 82 0 5 108 14 15 149 15 3 139 8 13 137 0 4 61 0 1 524 18 1 212 7 8 38 19 10 347 0 2 181 0 2 87 1 2 48 0 4 24 0 2 108 1 0 151 4 5 8 0 9 118 1 2 10 3 0 23 1 0 9 1 0 10 6 2 7 0 5 7 15 8 34 18 16 45 1 0 15 12 1 30 8 5 14 2 0 24 1 0 21 1 0 13 1 0 12 chain 160406 chr15 101991189 + 87041968 87043899 HERVH-int 3825 + 1887 3825 11729 199 10 15 156 0 1 1150 37 38 379 chain 23137 chr15 101991189 + 87045106 87045502 LTR7 482 + 0 440 52164 100 4 49 11 51 0 51 9 19 33 1 32 19 0 10 47 1 0 69 chain 23503 chr15 101991189 + 87100156 87100467 L1PA8 5853 + 5542 5853 51587 22 2 0 44 2 0 74 1 0 7 1 0 59 0 7 5 2 1 92 chain 23419 chr15 101991189 + 87143219 87143509 AluSc 308 + 17 308 51728 246 0 1 44 chain 23766 chr15 101991189 + 87154432 87154717 L1PB1 5432 + 4136 4421 51169 285 chain 3527 chr15 101991189 + 87263679 87263724 MADE1 96 + 51 96 95042 45 chain 4803 chr15 101991189 + 87292662 87292770 MER53 195 + 9 167 86684 54 33 83 21 chain 531492 chr15 101991189 + 87377228 87383395 L1PA4 6152 + 0 6150 1776 1005 0 1 576 0 3 866 1 3 373 0 1 997 11 12 345 0 2 707 0 7 14 22 0 159 0 6 526 1 0 290 18 0 115 0 1 141 chain 36190 chr15 101991189 + 87396657 87397063 L1PA4 6152 + 5745 6151 37279 406 chain 6329 chr15 101991189 + 87399630 87399738 MER58A 224 + 50 159 79899 61 20 21 27 chain 11360 chr15 101991189 + 87407147 87407312 LTR39 781 + 47 217 67988 138 13 18 14 chain 542314 chr15 101991189 + 87463740 87469746 L1PA3long 6157 + 0 6157 1191 152 0 12 522 0 3 92 0 128 67 1 2 1604 0 1 663 0 1 12 0 4 2739 0 1 154 chain 566879 chr15 101991189 + 87509891 87515920 L1HS 6032 + 3 6032 45 6029 chain 2911 chr15 101991189 + 87577923 87577967 MIRb 242 + 98 141 100743 26 2 1 16 chain 62084 chr15 101991189 + 87593336 87594032 L1PA5 6144 + 5435 6131 25848 696 chain 180356 chr15 101991189 + 87696819 87698906 L1PA6 6164 + 3968 6065 10571 28 7 9 606 2 0 673 0 8 5 2 0 11 1 0 394 0 1 14 0 5 112 1 0 231 chain 251012 chr15 101991189 + 87770709 87774043 L1PA8 5853 + 2530 5853 8201 109 13 1 7 0 23 218 1 0 43 22 11 110 2 17 14 1 0 371 0 1 775 0 1 109 17 17 49 15 0 594 1 0 9 2 0 85 1 0 470 1 0 45 12 10 51 27 25 49 15 11 5 0 2 91 chain 12168 chr15 101991189 + 87830967 87831106 L1HS 6032 + 0 140 66531 95 0 1 44 chain 39918 chr15 101991189 + 87831106 87831555 LTR7 482 + 0 482 34724 263 1 32 91 0 2 94 chain 293280 chr15 101991189 + 87831557 87835305 HERVH-int 3825 + 0 3825 7031 212 0 11 309 66 0 38 1 0 9 2 1 9 4 0 14 49 1 15 1 0 12 3 0 24 4 3 22 0 20 25 68 5 49 1 0 444 15 0 201 0 4 66 1 2 189 4 31 69 0 1 468 0 2 864 8 218 254 3 8 225 chain 4917 chr15 101991189 + 87832083 87832139 HERVH-int 3825 + 476 532 86073 56 chain 13886 chr15 101991189 + 87836572 87836801 LTR7 482 + 0 230 63754 86 50 0 11 1 51 77 0 1 4 chain 17062 chr15 101991189 + 87836801 87837013 LTR7 482 + 261 473 59740 24 14 13 66 0 1 108 chain 223810 chr15 101991189 + 87837337 87839779 L1PA3long 6157 + 3715 6157 8936 2442 chain 25182 chr15 101991189 + 87870029 87870567 L1PB1 5432 + 4958 5420 48983 37 12 6 50 1 2 50 42 3 8 5 0 20 1 0 13 1 0 10 16 10 53 2 1 16 1 0 43 1 0 7 23 10 30 19 19 24 1 0 21 1 0 13 1 0 16 chain 54289 chr15 101991189 + 87895369 87896190 MER4E 760 + 18 737 28122 43 0 1 86 0 10 12 13 6 248 91 0 35 0 1 69 11 0 85 1 0 68 7 3 52 chain 17889 chr15 101991189 + 87963513 87963745 MER47A 366 + 108 339 58772 173 1 0 58 chain 56368 chr15 101991189 + 87989020 87989657 L1PA5 6144 + 5501 6139 27465 500 0 1 137 chain 29307 chr15 101991189 + 88056888 88057198 AluYg6 310 + 0 310 42880 310 chain 29154 chr15 101991189 + 88094184 88094505 AluYb8 318 + 0 318 43113 126 3 0 192 chain 28745 chr15 101991189 + 88200411 88200784 THE1C 375 + 0 375 43713 107 10 11 66 1 2 189 chain 4276 chr15 101991189 + 88203601 88203686 L1MA4 2864 + 2724 2801 89643 14 8 2 25 5 3 33 chain 22546 chr15 101991189 + 88303927 88304209 AluSp 311 + 10 288 53048 47 5 0 147 2 3 81 chain 6705 chr15 101991189 + 88327111 88327245 MER58A 224 + 47 192 78626 36 43 54 55 chain 6390 chr15 101991189 + 88351796 88351869 MLT1A 405 + 297 370 79703 73 chain 542968 chr15 101991189 + 88357066 88363201 L1PA4 6152 + 0 6151 1139 130 14 0 12 0 14 215 0 2 87 6 0 120 1 0 613 3 0 5 5 8 288 0 1 1670 0 1 759 0 1 428 0 4 300 3 13 712 0 1 226 0 3 538 chain 7697 chr15 101991189 + 88366318 88366537 LTR12 884 + 66 401 75632 11 2 1 12 36 0 8 25 90 62 5 4 11 1 92 20 2 0 24 chain 15629 chr15 101991189 + 88456890 88457195 Tigger4b 360 + 22 351 61498 11 1 8 25 55 77 48 8 6 81 1 0 25 4 3 11 1 0 34 chain 125226 chr15 101991189 + 88523409 88524964 SVA_B 1603 + 2 1600 14662 12 5 0 5 0 1 21 7 0 486 40 0 124 37 0 182 7 89 23 0 41 267 16 26 312 2 0 9 chain 2399 chr15 101991189 + 88523945 88523974 SVA_B 1603 + 451 480 100873 29 chain 38725 chr15 101991189 + 88538133 88538626 LTR6B 557 + 0 541 35548 38 0 46 275 9 10 32 1 0 93 1 2 4 0 1 40 chain 75270 chr15 101991189 + 88540551 88541519 LTR5_Hs 974 + 0 974 22779 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 32689 chr15 101991189 + 88543835 88544720 HERVS71-int 4705 + 3281 4098 39775 19 94 80 16 1 0 17 2 0 57 38 32 23 1 0 17 19 18 50 7 5 16 1 0 35 1 0 11 3 0 11 1 0 5 15 12 5 2 0 5 1 0 28 1 0 10 5 2 4 1 0 28 10 6 20 13 10 33 6 3 20 1 0 17 9 6 26 6 4 10 1 0 11 11 10 39 16 13 12 22 20 46 1 0 5 chain 40495 chr15 101991189 + 88545721 88546230 LTR6B 557 + 0 557 34311 38 0 46 275 9 10 32 1 0 92 0 1 6 0 1 56 chain 38725 chr15 101991189 + 88588891 88589882 L1PB1 5432 + 4783 5411 35547 14 19 19 78 0 1 208 46 11 24 1 0 9 16 11 9 2 0 53 2 1 16 1 0 35 0 3 5 1 0 16 4 0 15 8 0 16 325 19 24 1 0 21 1 0 13 1 0 7 chain 10898 chr15 101991189 + 88666443 88666604 L1M1 2793 + 2215 2381 68700 68 18 23 75 chain 60691 chr15 101991189 + 88667289 88668230 L1MA3 4352 + 246 1137 26178 59 1 0 8 10 4 160 5 20 276 2 0 20 0 3 42 0 2 28 11 7 125 0 1 18 55 1 5 0 2 44 18 17 12 22 17 20 chain 25959 chr15 101991189 + 88746438 88746879 MER4A1 472 + 8 453 47781 14 15 15 193 11 32 12 7 13 17 30 0 85 7 14 50 chain 25695 chr15 101991189 + 88916210 88916510 AluSp 311 + 1 304 48180 90 0 3 210 chain 5594 chr15 101991189 + 88917565 88917679 L1MB7 1623 + 396 506 82832 39 7 0 12 25 28 31 chain 41065 chr15 101991189 + 88921616 88922583 HUERS-P1-int 2401 + 152 970 33927 14 9 4 31 9 0 4 48 0 25 1 0 10 21 22 18 4 0 11 11 8 14 44 20 11 6 2 13 24 0 13 1 0 13 2 0 43 3 0 8 0 3 5 11 7 22 1 0 8 3 1 22 18 0 25 8 5 12 0 3 23 2 0 23 4 18 37 1 0 42 4 0 27 2 1 8 0 1 23 0 1 74 11 3 65 9 11 22 4 0 30 0 2 10 chain 4853 chr15 101991189 + 88924626 88924690 HUERS-P1-int 2401 + 2077 2139 86413 47 2 0 15 chain 43716 chr15 101991189 + 88924993 88925496 MER9a2 513 + 0 513 32314 32 0 12 336 2 0 133 chain 3595 chr15 101991189 + 88937538 88937579 MER4D0 881 + 840 881 94477 41 chain 35721 chr15 101991189 + 88950977 88951492 MER41A 554 + 0 523 37588 83 15 17 256 3 1 73 0 1 7 9 10 15 13 19 41 chain 8211 chr15 101991189 + 88959597 88959715 Ricksha 1077 + 426 539 74385 14 7 0 53 0 2 44 chain 20251 chr15 101991189 + 88980857 88981108 Tigger3c 601 + 311 564 56082 69 0 1 133 0 1 49 chain 10903 chr15 101991189 + 88996722 88996850 L1PA8 5853 + 5240 5368 68695 128 chain 48296 chr15 101991189 + 89011727 89012613 LTR10C 591 + 0 591 30183 220 0 12 103 308 0 197 0 1 58 chain 19878 chr15 101991189 + 89056433 89056667 AluY 311 + 73 307 56565 234 chain 4871 chr15 101991189 + 89106828 89106882 MLT1C 463 + 63 117 86315 54 chain 14861 chr15 101991189 + 89130451 89130644 MER107 203 + 3 203 62444 143 0 3 5 1 2 6 0 3 38 chain 51798 chr15 101991189 + 89250109 89250699 L1PA5 6144 + 5549 6138 28940 342 1 0 247 chain 6539 chr15 101991189 + 89335072 89335145 tRNA-Arg-CGA_ 73 + 0 73 79205 73 chain 29805 chr15 101991189 + 89536150 89536493 L1P1 4361 + 3987 4328 42227 163 1 0 155 1 0 23 chain 541427 chr15 101991189 + 89634319 89640301 L1PA3long 6157 + 4 6156 1243 148 0 1 164 0 1 463 0 128 725 1 0 1617 0 10 630 4 7 47 0 16 78 0 4 307 0 4 527 0 4 1271 chain 7210 chr15 101991189 + 89714238 89714325 U6 107 + 7 94 76908 87 chain 130624 chr15 101991189 + 89853521 89855546 SVA_F 1814 + 384 1814 13963 496 2 0 19 274 0 49 0 15 74 179 0 176 155 0 601 chain 2897 chr15 101991189 + 89854038 89854075 SVA_F 1814 + 1012 1127 95081 1 0 78 36 chain 12224 chr15 101991189 + 89854075 89854263 SVA_F 1814 + 937 1091 44045 10 1 15 13 49 0 89 0 1 26 chain 4192 chr15 101991189 + 89854099 89854148 SVA_F 1814 + 1102 1151 58614 49 chain 2139 chr15 101991189 + 89854263 89854288 SVA_F 1814 + 1267 1291 58614 7 1 0 17 chain 5137 chr15 101991189 + 89854435 89854514 SVA_F 1814 + 1213 1291 44045 61 1 0 17 chain 4508 chr15 101991189 + 89854526 89854614 SVA_F 1814 + 1127 1213 61113 50 1 0 5 1 0 31 chain 4758 chr15 101991189 + 89854790 89854844 SVA_F 1814 + 988 1043 62187 50 0 1 4 chain 4259 chr15 101991189 + 89854844 89854888 SVA_F 1814 + 1169 1213 66836 44 chain 2279 chr15 101991189 + 89854913 89854945 SVA_F 1814 + 1132 1164 81156 32 chain 165705 chr15 101991189 + 89867049 89869584 SVA_F 1814 + 9 1814 11353 889 370 0 49 0 15 176 381 0 660 0 6 10 chain 20130 chr15 101991189 + 89867973 89868308 SVA_F 1814 + 916 1089 40934 31 0 15 14 177 0 113 chain 13881 chr15 101991189 + 89868018 89868195 SVA_F 1814 + 1025 1152 44285 66 50 0 61 chain 6064 chr15 101991189 + 89868533 89868711 SVA_F 1814 + 1011 1140 56646 21 49 0 108 chain 4055 chr15 101991189 + 89868711 89868786 SVA_F 1814 + 964 1011 74089 25 1 0 4 37 10 8 chain 12222 chr15 101991189 + 89868787 89868914 SVA_F 1814 + 962 1089 66435 127 chain 5671 chr15 101991189 + 89891296 89891377 L1MB8 1703 + 978 1057 82465 5 2 0 74 chain 88974 chr15 101991189 + 89977507 89978540 SVA_F 1814 + 0 1583 19863 105 0 39 5 11 0 247 0 76 120 0 37 66 0 80 40 0 330 30 1 0 408 chain 15653 chr15 101991189 + 89981904 89982171 LTR23 429 + 0 228 61463 4 1 0 88 27 11 37 23 0 82 0 1 5 chain 23979 chr15 101991189 + 90056138 90056426 AluSp 311 + 11 294 50824 117 4 0 13 1 0 153 chain 21936 chr15 101991189 + 90091979 90092292 MER1A 529 + 207 514 53923 125 7 9 115 20 12 46 chain 16618 chr15 101991189 + 90096316 90096610 L1MB3 1562 + 762 1037 60248 29 3 0 100 45 28 20 9 11 22 1 0 65 chain 9163 chr15 101991189 + 90112664 90112798 MER2 342 + 82 218 72198 35 1 0 38 6 9 54 chain 14559 chr15 101991189 + 90132782 90132981 LTR7B 505 + 0 277 62836 108 0 10 53 1 0 4 13 82 20 chain 190014 chr15 101991189 + 90133518 90136317 HERVH-int 3825 + 31 3054 10114 56 0 1 228 29 28 66 11 10 37 23 293 29 1 0 78 1 6 366 211 181 20 9 0 351 53 38 102 1 0 4 1 2 163 0 5 206 0 2 23 0 1 19 0 4 58 0 1 5 5 4 125 5 6 227 0 2 24 11 0 48 4 6 160 1 0 38 chain 26768 chr15 101991189 + 90137913 90138290 LTR7B 505 + 0 495 46586 106 0 11 54 13 26 38 1 22 21 0 74 122 0 1 5 2 0 15 chain 26592 chr15 101991189 + 90285790 90286089 AluY 311 + 5 304 46847 299 chain 9355 chr15 101991189 + 90294023 90294179 7SLRNA 320 + 103 284 71799 110 31 56 15 chain 53060 chr15 101991189 + 90375129 90375802 LTR12_ 688 + 0 657 28551 163 24 7 89 1 0 82 0 2 314 chain 3383 chr15 101991189 + 90506690 90506761 MER20 218 + 89 159 96257 38 21 20 12 chain 101596 chr15 101991189 + 90635817 90636928 L1PA4 6152 + 4400 5515 18117 878 0 4 233 chain 12589 chr15 101991189 + 90780803 90780986 MER2 342 + 148 325 65813 20 7 0 131 8 9 17 chain 7114 chr15 101991189 + 90825939 90826074 LTR12C 1709 + 928 1063 66090 135 chain 14059 chr15 101991189 + 90826100 90826327 LTR12C 1709 + 651 877 63504 98 41 0 68 0 40 20 chain 2492 chr15 101991189 + 90826209 90826239 LTR12C 1709 + 956 986 91540 30 chain 21151 chr15 101991189 + 90901350 90901624 L1PA8 5853 + 5566 5848 54943 43 2 0 25 0 1 47 1 0 35 0 12 11 2 1 19 1 0 88 chain 4033 chr15 101991189 + 90964253 90964301 L1ME1 1623 + 1210 1258 91214 48 chain 6508 chr15 101991189 + 90975600 90975681 MLT1B 390 + 7 88 79318 81 chain 9911 chr15 101991189 + 90989004 90989250 L1MB8 1703 + 949 1211 70592 66 1 4 33 107 120 39 chain 58476 chr15 101991189 + 91060181 91060860 L1PA5 6144 + 5468 6143 26819 342 0 1 184 3 0 25 2 0 123 chain 396287 chr15 101991189 + 91090308 91094709 L1PA4 6152 + 1732 6143 5209 2344 0 5 1223 1 5 6 0 1 827 chain 40562 chr15 101991189 + 91143385 91143896 MER75 514 + 0 512 34254 489 1 2 21 chain 19369 chr15 101991189 + 91164142 91164363 L1PA5 6144 + 4525 4746 57163 221 chain 13730 chr15 101991189 + 91255343 91255607 L1PB1 5432 + 5178 5420 63976 42 2 1 16 1 0 40 6 5 14 1 0 6 16 6 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 26536 chr15 101991189 + 91278411 91278702 AluYb8 318 + 16 312 46921 107 2 0 129 0 7 53 chain 23604 chr15 101991189 + 91372961 91373261 L1PREC2 3366 + 1889 2189 51423 73 2 1 218 0 1 7 chain 41267 chr15 101991189 + 91382284 91382864 L1PA8 5853 + 5220 5808 33810 153 6 9 157 0 1 24 1 0 44 2 0 54 33 42 29 4 0 4 1 4 19 1 0 48 chain 535254 chr15 101991189 + 91500665 91506645 L1PA3long 6157 + 45 6156 1610 107 1 2 588 1 0 25 9 137 1423 0 2 222 1 0 637 0 1 499 2 1 414 0 2 2051 chain 45087 chr15 101991189 + 91524217 91524769 LTR19B 566 + 8 566 31537 34 1 0 56 0 7 193 2 0 134 0 2 81 0 1 18 6 5 27 chain 16061 chr15 101991189 + 91583691 91583869 L1P1 4361 + 1336 1514 60945 178 chain 56750 chr15 101991189 + 91613628 91614244 L1PA3long 6157 + 4856 5472 27338 616 chain 33620 chr15 101991189 + 91616772 91617141 L1PA3long 6157 + 5788 6157 38984 369 chain 4677 chr15 101991189 + 91654694 91654756 MADE1 96 + 34 96 87394 11 0 1 23 1 0 27 chain 6368 chr15 101991189 + 91655684 91655816 LTR12 884 + 210 340 79781 40 26 0 20 0 25 21 4 3 21 chain 28737 chr15 101991189 + 91823238 91823650 MSTA 426 + 0 426 43730 204 6 10 20 14 16 50 9 17 109 chain 20556 chr15 101991189 + 91896416 91896778 THE1B 368 + 0 368 55705 5 0 1 46 0 1 55 5 6 55 1 0 6 63 68 63 9 8 54 chain 24497 chr15 101991189 + 91958695 91959056 L1PB2 3958 + 3487 3838 50027 17 4 0 41 1 0 71 2 1 64 2 1 67 2 0 22 16 15 52 chain 132462 chr15 101991189 + 92038399 92040213 L1PA8 5853 + 3991 5853 13785 343 1 0 229 15 19 89 1 21 108 7 7 85 19 22 73 0 4 18 0 3 173 4 7 75 2 3 185 0 1 108 1 0 45 2 0 43 28 43 45 2 1 19 1 0 93 chain 8932 chr15 101991189 + 92199061 92199194 MSTB-int 1649 + 0 132 72715 67 11 10 55 chain 27806 chr15 101991189 + 92199741 92200140 L1PA8 5853 + 5437 5853 45173 60 0 5 62 1 0 40 12 14 62 1 0 7 10 9 36 0 14 13 2 0 4 0 1 89 chain 15046 chr15 101991189 + 92203836 92204194 THE1B 368 + 1 368 62207 106 134 145 11 5 4 37 2 0 6 1 2 56 chain 37268 chr15 101991189 + 92207153 92207647 LTR12 884 + 0 871 36573 24 1 0 66 1 3 127 0 141 16 2 0 94 0 1 89 0 236 74 chain 78479 chr15 101991189 + 92210711 92211744 HERV9-int 5642 + 4635 5637 21986 595 1 0 95 2 4 128 10 8 32 3 1 9 1 4 13 2 1 60 1 0 13 28 5 19 4 0 3 2 0 12 chain 45376 chr15 101991189 + 92214369 92214976 LTR12 884 + 0 884 31377 25 1 0 176 0 2 72 0 41 24 1 2 36 2 0 169 0 103 40 0 133 61 chain 188939 chr15 101991189 + 92251683 92253783 L1PA3long 6157 + 3138 5243 10166 1089 1 0 16 1 2 399 0 5 594 chain 123959 chr15 101991189 + 92256804 92258745 L1PA8A 6298 + 4654 6291 14856 132 0 3 35 3 0 38 4 3 607 0 4 12 0 2 19 4 3 34 312 0 27 1 0 23 5 8 107 21 22 65 18 0 8 2 20 54 0 1 90 0 1 207 1 0 112 chain 44199 chr15 101991189 + 92298146 92298670 LTR17 781 + 255 781 32012 72 0 1 39 1 0 405 0 2 7 chain 166464 chr15 101991189 + 92299639 92301562 HERV17-int 4347 + 2420 4347 11308 701 1 2 213 6 10 983 1 0 18 chain 27252 chr15 101991189 + 92301875 92302200 LTR17 781 + 0 326 45893 307 0 1 18 chain 40029 chr15 101991189 + 92309125 92309574 L1PA7 6471 + 6009 6458 34633 449 chain 13454 chr15 101991189 + 92353239 92353410 THE1D 372 + 196 370 64384 33 1 0 82 0 5 20 2 1 33 chain 4950 chr15 101991189 + 92388469 92388533 MER63D 473 + 120 182 85894 57 2 0 5 chain 10800 chr15 101991189 + 92404408 92404539 L1MB3 1562 + 984 1115 68859 131 chain 4759 chr15 101991189 + 92459856 92459920 MER102b 334 + 76 140 86917 64 chain 8982 chr15 101991189 + 92483580 92483732 L1MA4 2864 + 1866 2005 72595 88 29 16 35 chain 140970 chr15 101991189 + 92486962 92488529 L1PA4 6152 + 3948 5519 13028 403 0 4 304 0 1 425 1 0 434 chain 28050 chr15 101991189 + 92511306 92511757 LTR7 482 + 0 470 44785 69 29 17 15 15 14 69 21 21 19 0 1 8 0 31 43 0 1 4 1 0 158 chain 318172 chr15 101991189 + 92511771 92515753 HERVH-int 3825 + 0 3825 6439 332 1 0 141 0 4 8 2 0 85 1 0 10 1 0 24 128 0 27 3 0 6 22 1 10 25 4 44 2 1 22 1 2 6 1 0 52 1 0 313 0 1 40 0 4 304 0 1 644 11 16 984 0 3 136 8 12 221 0 1 366 chain 3910 chr15 101991189 + 92512376 92512418 HERVH-int 3825 + 488 530 90210 42 chain 31478 chr15 101991189 + 92517017 92517425 LTR7 482 + 0 482 40749 71 6 44 109 0 1 8 0 31 118 0 4 96 chain 24449 chr15 101991189 + 92529548 92529902 THE1B 368 + 0 368 50103 44 5 20 17 1 2 89 1 0 19 7 1 112 2 0 21 0 7 36 chain 23229 chr15 101991189 + 92534443 92534770 THE1C 375 + 0 336 52037 66 0 2 62 1 7 6 4 0 32 16 21 140 chain 3293 chr15 101991189 + 92544488 92544539 L1MC1 2226 + 2074 2119 97074 9 5 0 21 1 0 15 chain 56610 chr15 101991189 + 92606932 92607544 SVA_D 2077 + 1441 2064 27385 107 0 1 180 0 10 325 chain 30997 chr15 101991189 + 92646457 92647034 MER4B 649 + 15 619 41127 41 39 14 44 21 18 22 17 64 113 21 30 58 24 21 38 9 12 74 1 0 55 chain 12037 chr15 101991189 + 92692233 92692365 L1PA2 6032 + 5898 6032 66785 109 0 2 23 chain 159059 chr15 101991189 + 92699696 92701513 L1PA5 6144 + 4329 6144 11805 279 1 0 165 1 0 1371 chain 12270 chr15 101991189 + 92731630 92731881 L1PA16 3655 + 3393 3619 66332 42 0 1 110 71 50 7 5 0 16 chain 23965 chr15 101991189 + 92752213 92752552 THE1B 368 + 0 368 50847 44 6 21 104 1 0 30 2 0 20 0 9 78 5 13 49 chain 427959 chr15 101991189 + 92755239 92760139 L1PA5 6144 + 614 5511 4777 90 2 0 299 0 1 165 9 0 86 0 1 112 0 4 823 0 1 117 3 1 1755 0 5 699 1 0 610 1 0 128 chain 3709 chr15 101991189 + 92892343 92892478 MER58A 224 + 47 185 93553 34 76 79 25 chain 42450 chr15 101991189 + 92915723 92916340 MER4A1_ 611 + 0 611 33097 115 7 8 58 0 9 16 1 0 84 26 9 26 8 7 55 1 0 51 0 4 30 1 0 18 0 1 120 chain 8580 chr15 101991189 + 92958442 92958559 MER85 139 + 13 139 73494 77 3 12 37 chain 103420 chr15 101991189 + 93031645 93032922 LTR12C 1709 + 0 1709 17897 102 5 6 713 0 40 50 0 207 106 0 4 81 27 208 163 1 0 29 chain 12697 chr15 101991189 + 93108513 93108679 L1PA16 3655 + 3424 3587 65623 153 3 0 10 chain 14773 chr15 101991189 + 93148916 93149134 L1MA7 2200 + 1498 1720 62563 57 1 0 54 1 7 65 8 7 32 chain 5564 chr15 101991189 + 93286239 93286319 MADE1 96 + 0 96 82965 29 0 16 51 chain 32160 chr15 101991189 + 93303666 93304222 L1PB1 5432 + 4899 5422 40223 204 1 2 12 3 0 21 37 29 53 19 17 40 8 7 12 1 0 4 2 0 11 9 0 16 8 5 14 2 0 24 1 0 21 1 0 13 1 0 18 chain 37746 chr15 101991189 + 93344308 93345111 HERV1_LTRa 508 + 0 508 36243 42 1 0 5 1 0 38 4 1 5 2 0 206 296 0 51 0 12 112 10 6 30 chain 40901 chr15 101991189 + 93364887 93365427 MER41A 554 + 0 554 34029 288 0 1 38 6 0 12 0 1 38 2 20 59 0 1 84 1 0 12 chain 20876 chr15 101991189 + 93403184 93403455 THE1A 353 + 83 353 55285 22 7 6 242 chain 128059 chr15 101991189 + 93403455 93405045 THE1A-int 1579 + 0 1579 14270 117 0 1 515 1 9 140 0 2 329 42 10 49 0 1 69 0 10 194 1 0 133 chain 27681 chr15 101991189 + 93405045 93405399 THE1A 353 + 0 353 45348 111 1 0 242 chain 41627 chr15 101991189 + 93469892 93470530 LTR9B 643 + 0 643 33609 107 12 13 80 8 7 126 3 0 86 33 34 53 0 3 64 21 25 45 chain 14273 chr15 101991189 + 93521537 93521719 Tigger3a 397 + 143 332 63234 65 0 7 117 chain 38670 chr15 101991189 + 93551732 93552185 L1PA7 6471 + 6013 6470 35589 123 0 1 205 0 3 125 chain 13807 chr15 101991189 + 93554562 93554972 LTR12 884 + 74 870 63876 41 1 0 66 1 0 27 3 45 21 178 391 29 1 134 42 chain 17229 chr15 101991189 + 93568001 93568357 THE1D 372 + 0 372 59550 62 8 18 15 34 38 33 20 22 4 0 1 50 4 5 10 1 0 72 18 17 25 chain 7326 chr15 101991189 + 93582997 93583087 MADE1 96 + 0 96 76579 47 0 6 43 chain 19850 chr15 101991189 + 93625677 93625945 AluSg7 307 + 38 307 56613 93 18 19 157 chain 23719 chr15 101991189 + 93626036 93626294 L1PA2 6032 + 5770 6028 51253 258 chain 559755 chr15 101991189 + 93675399 93681428 L1PA2 6032 + 0 6029 177 6029 chain 91929 chr15 101991189 + 93734593 93735665 MER11C 1089 + 0 1073 19351 600 0 1 325 2 1 5 0 1 140 chain 146381 chr15 101991189 + 93755094 93756786 L1PA4 6152 + 4440 6143 12582 615 0 1 250 0 4 34 0 5 177 0 2 467 10 9 139 chain 485794 chr15 101991189 + 93792219 93797742 L1PA4 6152 + 0 5515 3516 422 11 0 517 0 1 1026 1 2 95 3 0 3241 0 4 207 chain 24110 chr15 101991189 + 93804090 93804384 AluSc 308 + 4 301 50630 5 0 1 64 0 2 96 0 1 6 1 0 122 chain 16666 chr15 101991189 + 93887942 93888166 L1PA8 5853 + 5615 5853 60191 61 3 19 45 2 1 19 1 0 93 chain 37985 chr15 101991189 + 94005928 94006441 LTR12F 595 + 0 594 36085 100 0 12 34 5 69 186 9 13 76 1 2 102 chain 30885 chr15 101991189 + 94040539 94041081 L1PA15 4387 + 3840 4365 41233 6 0 2 42 2 0 42 1 0 113 11 13 46 1 0 21 2 0 5 1 0 54 2 1 18 6 0 7 0 2 5 2 1 37 25 22 35 2 0 16 2 0 28 1 0 9 chain 51918 chr15 101991189 + 94157239 94158004 LTR17 781 + 0 763 28903 57 1 0 104 1 0 18 1 0 27 0 1 26 1 0 15 8 7 58 26 0 7 11 10 251 3 0 114 2 46 13 12 0 9 chain 13069 chr15 101991189 + 94187400 94187610 L1PA8 5853 + 5647 5853 64984 32 1 0 9 7 0 6 11 17 29 2 1 19 1 0 93 chain 34745 chr15 101991189 + 94203274 94203715 LTR71A 459 + 0 459 38190 194 11 12 172 3 20 61 chain 160091 chr15 101991189 + 94217723 94219744 L1PA8 5853 + 3783 5799 11748 256 4 3 308 12 6 207 5 9 367 3 0 45 4 13 12 2 0 75 1 4 305 16 13 156 1 0 48 2 0 69 1 0 65 1 0 16 2 1 38 chain 59293 chr15 101991189 + 94237425 94238196 MER4E1 777 + 2 769 26572 15 7 0 176 2 1 84 0 3 46 0 4 20 0 1 58 1 2 134 1 0 6 4 0 217 chain 4166 chr15 101991189 + 94321143 94321299 L1MA4 2864 + 2675 2804 90343 18 81 52 22 2 0 26 0 4 7 chain 19111 chr15 101991189 + 94349579 94349798 AluY 311 + 41 261 57434 91 0 1 128 chain 16254 chr15 101991189 + 94354283 94354643 THE1D 372 + 0 357 60676 51 9 0 17 25 26 36 7 4 32 32 34 25 1 0 19 9 11 26 8 10 36 2 5 25 chain 32434 chr15 101991189 + 94409009 94409510 MLT2A1 477 + 0 476 40007 91 0 6 71 5 2 9 0 1 23 1 2 178 0 2 8 58 32 12 1 0 3 5 0 36 chain 14016 chr15 101991189 + 94491180 94491425 L1MA4A 3247 + 2970 3204 63573 137 1 0 10 2 1 10 26 20 29 5 2 25 chain 98098 chr15 101991189 + 94492345 94493653 HERVL-int 5654 + 4347 5654 18518 77 0 1 58 0 3 136 16 4 112 1 2 17 0 1 143 0 3 45 7 8 108 5 7 281 6 0 71 0 5 225 chain 13179 chr15 101991189 + 94493653 94493806 MLT2A2 560 + 0 159 64814 12 0 6 141 chain 17291 chr15 101991189 + 94502087 94502294 L1PA5 6144 + 5939 6142 59471 196 4 0 7 chain 63487 chr15 101991189 + 94650753 94651500 LTR17 781 + 0 781 25528 310 10 0 17 1 0 379 0 44 23 0 1 7 chain 22713 chr15 101991189 + 94696291 94696572 AluSp 311 + 10 293 52811 20 2 1 246 0 3 13 chain 25851 chr15 101991189 + 94750748 94751145 LTR7 482 + 0 467 47937 69 29 17 15 16 66 57 9 41 202 chain 310548 chr15 101991189 + 94751178 94758719 HERVH-int 3825 + 16 3825 6603 516 5 0 35 4 3 10 1 0 20 0 31 25 22 0 42 2 1 15 21 0 65 1 0 450 15 0 200 9 0 29 0 2 10 1 0 23 0 1 285 0 1 247 3694 0 1048 6 9 324 37 38 379 chain 124841 chr15 101991189 + 94753302 94754808 HERVH-int 3825 + 2103 3825 14732 783 0 1 183 12 14 36 0 210 194 2 0 68 3 8 225 chain 36229 chr15 101991189 + 94756465 94756902 HERVH-int 3825 + 1557 2000 37253 264 5 6 28 3 8 137 chain 23756 chr15 101991189 + 94759964 94760363 LTR7 482 + 0 469 51185 50 26 65 34 14 15 60 9 41 20 11 7 127 12 14 36 chain 6356 chr15 101991189 + 94831334 94831407 MSTB 430 + 321 394 79820 73 chain 31830 chr15 101991189 + 94876367 94876804 MLT2A1 477 + 0 477 40472 142 0 1 21 9 13 197 19 55 29 1 0 19 chain 25635 chr15 101991189 + 94983661 94984120 L1PA11 4918 + 4133 4578 48262 92 4 5 101 7 13 49 20 17 65 2 0 11 1 0 22 3 0 9 33 24 13 1 0 13 2 0 11 chain 3846 chr15 101991189 + 95009072 95009117 MADE1 96 + 1 46 92522 45 chain 73353 chr15 101991189 + 95101959 95102820 L1PA7 6471 + 5609 6470 23246 5 1 0 518 1 2 336 chain 39762 chr15 101991189 + 95118121 95118764 L1MA3 4352 + 3700 4351 34847 30 7 12 8 3 0 205 0 3 125 20 31 65 1 0 20 0 2 40 19 17 22 13 11 25 1 0 13 5 1 21 chain 23511 chr15 101991189 + 95153175 95153488 THE1B 368 + 0 328 51575 44 0 15 5 0 2 102 17 16 87 1 0 57 chain 8410 chr15 101991189 + 95183191 95183295 THE1B 368 + 265 368 73876 76 1 0 27 chain 198267 chr15 101991189 + 95202488 95205155 HERVL-int 5654 + 2979 5654 9763 276 0 1 296 1 20 8 19 0 151 14 11 525 0 1 8 1 0 75 5 6 548 0 1 278 20 21 19 8 9 113 9 7 21 1 4 50 5 1 72 29 35 49 0 2 60 0 1 6 chain 27531 chr15 101991189 + 95206228 95206560 THE1B-int 1605 + 58 392 45550 224 0 2 108 chain 76377 chr15 101991189 + 95218226 95219166 L1PA7 6471 + 5527 6467 22471 94 1 0 61 0 1 452 11 13 167 0 1 131 10 7 13 chain 3354 chr15 101991189 + 95297887 95297994 MER20 218 + 137 218 96561 14 55 29 38 chain 22754 chr15 101991189 + 95300483 95300772 AluY 311 + 17 303 52750 92 1 0 24 8 6 164 chain 18158 chr15 101991189 + 95311339 95311720 MSTA 426 + 16 414 58502 10 0 1 70 18 36 52 62 59 19 15 15 71 18 19 46 chain 20068 chr15 101991189 + 95390350 95390586 L1PA7 6471 + 6227 6460 56296 91 3 0 142 chain 33500 chr15 101991189 + 95637402 95637784 L1PA5 6144 + 5764 6144 39090 371 2 0 9 chain 5435 chr15 101991189 + 95676279 95676339 L1PB1 5432 + 4411 4471 83529 60 chain 12877 chr15 101991189 + 95745807 95745977 U2 167 + 0 164 65295 130 2 0 9 2 0 3 2 0 22 chain 12783 chr15 101991189 + 95757941 95758203 L1PA8 5853 + 5587 5853 65466 19 26 24 44 29 27 39 2 1 19 10 19 74 chain 119126 chr15 101991189 + 95774594 95776301 L1PA5 6144 + 4731 6129 15675 215 0 2 22 0 1 321 2 3 6 0 1 72 317 1 520 5 7 227 chain 10245 chr15 101991189 + 95834652 95834782 UCON11 162 + 11 137 69911 98 3 0 13 1 0 15 chain 4582 chr15 101991189 + 95915831 95915888 MIR 256 + 89 146 87890 57 chain 21308 chr15 101991189 + 96060588 96060939 THE1A 353 + 2 353 54754 11 2 0 34 0 1 31 72 73 201 chain 164592 chr15 101991189 + 96204696 96206570 L1PA5 6144 + 4250 6130 11448 87 0 4 119 4 0 228 0 1 90 1 0 310 0 8 892 1 0 43 1 0 98 chain 47172 chr15 101991189 + 96633267 96633780 L1PA2 6032 + 5513 6032 30582 493 0 6 20 chain 38687 chr15 101991189 + 96659209 96659639 L1PA2 6032 + 5601 6031 35570 430 chain 9543 chr15 101991189 + 96663636 96663775 MSTD 398 + 0 138 71381 77 16 15 46 chain 263968 chr15 101991189 + 96664310 96667269 L1PA4 6152 + 2550 5522 7856 578 2 4 866 0 3 157 0 4 503 1 0 632 0 5 220 chain 52350 chr15 101991189 + 96754393 96754974 L1PA3long 6157 + 5574 6157 28775 72 0 1 367 0 1 142 chain 57041 chr15 101991189 + 96770214 96770954 MER4E 760 + 8 744 27254 9 2 0 27 1 0 37 0 1 62 4 14 12 7 0 64 1 0 109 2 1 22 2 0 244 1 0 134 chain 3548 chr15 101991189 + 96792165 96792213 Charlie4a 502 + 348 395 94872 30 1 0 17 chain 41029 chr15 101991189 + 96884016 96884476 L1P1 4361 + 3570 4037 33950 302 0 7 158 chain 23382 chr15 101991189 + 96898611 96898868 L1PA2 6032 + 5772 6030 51795 102 0 1 155 chain 14176 chr15 101991189 + 96909197 96909361 L1PA5 6144 + 5978 6140 63351 67 0 1 84 3 0 10 chain 13311 chr15 101991189 + 96966318 96966501 L1PA7 6471 + 6288 6470 64599 25 12 11 146 chain 6216 chr15 101991189 + 97021766 97021911 MLT1B 390 + 186 331 80292 42 51 52 20 1 0 31 chain 41883 chr15 101991189 + 97036918 97037468 MLT2A2 560 + 0 560 33436 193 0 1 20 0 1 141 18 25 123 0 1 55 chain 43821 chr15 101991189 + 97095396 97095944 MLT2A2 560 + 0 560 32238 403 1 12 74 0 1 70 chain 52354 chr15 101991189 + 97097765 97098449 L1PB1 5432 + 4423 5103 28773 122 0 1 4 1 0 49 5 0 22 0 1 69 1 0 121 0 1 290 chain 30449 chr15 101991189 + 97105543 97105979 LTR3A 482 + 34 482 41627 84 3 0 5 25 28 44 0 14 163 1 0 34 1 0 76 chain 364453 chr15 101991189 + 97107702 97112432 L1PA8A 6298 + 1471 6290 5742 70 7 8 105 3 4 58 1 2 140 5 6 39 16 15 88 0 1 190 1 2 308 1 2 186 0 2 5 0 2 51 0 4 352 4 32 248 3 1 78 0 1 4 0 5 113 0 1 4 1 0 115 5 7 156 1 2 258 6 0 105 1 0 4 0 1 148 0 1 97 1 5 195 13 13 510 6 34 240 3 2 77 0 2 137 10 13 288 0 1 60 1 9 212 chain 27039 chr15 101991189 + 97133409 97133787 THE1C 375 + 0 375 46213 125 3 0 50 1 2 14 1 0 16 5 6 135 2 1 26 chain 16332 chr15 101991189 + 97171212 97171452 L1PA8 5853 + 5593 5853 60594 15 2 0 70 5 4 11 1 0 40 9 8 19 1 0 40 0 26 27 chain 34730 chr15 101991189 + 97173032 97173632 LTR12 884 + 0 783 38202 74 1 0 19 34 0 22 1 0 69 1 0 15 24 0 9 0 1 19 10 128 18 5 3 57 9 0 181 11 147 21 chain 72806 chr15 101991189 + 97221233 97222065 L1PA5 6144 + 5252 6086 23356 408 1 2 274 0 1 149 chain 121106 chr15 101991189 + 97364173 97365517 L1PA3long 6157 + 3315 4660 15332 204 1 2 1139 chain 3110 chr15 101991189 + 97399749 97399786 MER5A1 166 + 48 85 98702 37 chain 7487 chr15 101991189 + 97424566 97424654 L1PA8A 6298 + 6203 6291 76160 88 chain 549378 chr15 101991189 + 97432699 97438843 L1PA3long 6157 + 6 6151 789 1063 3 0 169 2 0 90 1 0 881 2 0 72 0 2 43 1 0 46 1 2 229 0 1 3150 0 3 383 0 3 8 chain 38678 chr15 101991189 + 97454874 97455385 L1PA8 5853 + 5348 5853 35583 216 1 0 46 2 0 27 1 2 40 1 0 14 1 0 47 2 1 19 4 3 90 chain 25749 chr15 101991189 + 97479468 97480005 L1PA15 4387 + 3827 4356 48096 45 24 22 39 1 0 164 11 9 16 13 17 45 90 86 46 17 14 26 chain 15054 chr15 101991189 + 97491253 97491468 L1PA8 5853 + 5644 5853 62199 38 1 0 9 2 1 48 2 1 19 2 0 16 2 1 76 chain 39225 chr15 101991189 + 97508005 97508452 L1PA4 6152 + 5703 6150 35196 447 chain 99169 chr15 101991189 + 97512602 97513891 L1PA8 5853 + 4555 5853 18390 451 1 9 11 9 12 304 1 2 177 0 3 40 1 0 46 2 0 60 21 19 71 1 0 93 chain 18355 chr15 101991189 + 97593169 97593422 L1PA8 5853 + 5609 5853 58294 70 7 0 9 2 1 5 0 1 45 2 1 19 1 0 93 chain 155616 chr15 101991189 + 97642986 97644803 L1PA6 6164 + 4335 6153 12032 27 0 4 1032 2 0 602 6 5 148 chain 56524 chr15 101991189 + 97663074 97663849 LTR12 884 + 4 868 27420 21 1 0 30 0 41 47 1 0 136 0 41 20 1 2 35 2 0 67 27 37 83 1 0 61 0 1 242 chain 41163 chr15 101991189 + 97742883 97743392 LTR12C 1709 + 1205 1708 33868 19 11 4 52 1 3 336 7 6 83 chain 97592 chr15 101991189 + 97777868 97779374 L1PA15 4387 + 2858 4355 18572 31 5 6 257 11 9 35 0 1 121 0 8 382 8 6 99 2 0 13 4 1 63 2 0 10 0 7 16 10 9 168 10 9 22 13 12 63 16 12 33 85 77 27 chain 7410 chr15 101991189 + 97819318 97819520 Tigger3a 397 + 56 324 76371 15 19 68 21 13 24 28 6 12 15 28 0 8 0 28 49 chain 14566 chr15 101991189 + 97875967 97876689 LTR12D 1347 + 590 1049 62832 72 0 1 30 131 12 8 24 0 38 320 200 49 28 27 22 chain 28206 chr15 101991189 + 97882276 97882648 THE1B 368 + 0 368 44553 172 7 6 115 3 0 75 chain 3115 chr15 101991189 + 97923299 97923352 MER58A 224 + 93 147 98660 28 9 10 16 chain 16700 chr15 101991189 + 97946678 97946863 L1PA2 6032 + 5834 6019 60150 185 chain 26348 chr15 101991189 + 97985975 97986312 THE1A 353 + 0 335 47203 12 0 1 97 1 0 92 1 0 32 3 2 99 chain 27689 chr15 101991189 + 97987890 97988241 THE1A 353 + 0 353 45333 81 2 4 26 1 0 85 0 2 22 1 0 133 chain 32211 chr15 101991189 + 98048422 98049022 MLT2A2 560 + 0 560 40176 37 0 4 28 0 8 110 41 0 122 121 106 135 0 4 6 chain 530417 chr15 101991189 + 98091539 98097550 L1PA3long 6157 + 2 6152 1811 120 0 1 27 4 5 147 0 1 464 9 137 38 8 8 90 1 0 409 0 3 371 0 1 1131 0 2 302 0 4 468 0 1 231 0 2 512 8 1 1221 7 11 430 1 0 12 chain 17740 chr15 101991189 + 98108060 98108307 MSTA-int 1630 + 1383 1630 58963 78 1 0 43 5 0 12 1 7 107 chain 113672 chr15 101991189 + 98115689 98116937 L1PA4 6152 + 4101 5349 16594 1248 chain 4227 chr15 101991189 + 98225748 98225795 MER96B 391 - 223 270 89959 47 chain 3832 chr15 101991189 + 98319359 98319420 MER57F 435 + 373 435 92627 27 1 2 23 1 0 5 0 1 4 chain 11544 chr15 101991189 + 98404872 98405080 L1PA8A 6298 + 5924 6107 67675 32 56 31 120 chain 29731 chr15 101991189 + 98446460 98446923 MER1A 529 + 64 529 42328 62 16 17 53 28 36 185 4 0 34 19 16 62 chain 4389 chr15 101991189 + 98457592 98457645 MLT1B 390 + 334 387 88947 53 chain 398361 chr15 101991189 + 98458254 98463620 L1PB1 5432 + 77 5418 5179 77 2 3 135 0 11 241 1 0 28 1 0 6 51 54 116 0 1 58 7 15 352 0 3 103 10 5 118 8 0 222 5 16 46 7 9 15 10 11 6 1 0 443 10 8 197 0 2 17 3 0 51 2 1 48 9 0 345 1 2 166 0 1 21 0 1 114 0 1 298 7 2 286 0 6 253 6 7 155 0 1 58 1 2 408 1 2 178 5 13 136 11 5 29 0 1 7 12 4 106 3 0 11 3 0 20 4 0 12 1 0 12 18 12 47 5 4 11 5 4 45 1 0 16 3 0 5 59 44 24 1 0 21 1 0 13 1 0 14 chain 28666 chr15 101991189 + 98488430 98488831 MLT2A1 477 + 0 394 43851 142 0 1 20 7 11 181 12 8 22 8 0 9 chain 30671 chr15 101991189 + 98509701 98510061 L1PA5 6144 + 5767 6132 41405 211 0 5 149 chain 3301 chr15 101991189 + 98550321 98550360 LTR12C 1709 + 1121 1160 97005 39 chain 15256 chr15 101991189 + 98979901 98980172 L1PB1 5432 + 5173 5422 61971 46 3 2 15 1 0 45 1 0 15 25 12 19 2 0 19 2 0 7 1 2 15 1 0 21 1 0 13 1 0 18 chain 485330 chr15 101991189 + 98987704 98993843 L1PA7 6471 + 16 6470 3525 41 0 1 111 19 19 10 1 0 4 1 6 6 5 0 13 18 18 161 3 0 160 0 1 42 1 0 90 32 32 202 15 17 40 6 5 98 0 13 162 1 0 9 2 0 353 0 1 138 1 5 69 1 0 693 5 25 849 0 4 83 4 0 39 0 3 32 0 3 346 5 10 55 1 0 222 0 2 48 0 1 117 0 2 108 0 1 317 0 2 140 4 5 386 9 0 266 0 4 8 0 3 85 0 2 177 6 11 38 0 271 42 1 2 35 11 7 21 7 0 8 0 8 139 10 0 7 chain 90320 chr15 101991189 + 99000002 99001250 LTR12C 1709 + 136 1709 19620 202 10 53 68 0 1 4 0 1 22 3 4 10 10 11 38 1 0 111 0 280 171 9 6 28 0 8 54 27 20 39 1 0 139 0 2 65 0 3 123 9 7 19 1 0 84 chain 23188 chr15 101991189 + 99054974 99055347 MSTA 426 + 16 424 52096 54 1 0 38 23 48 49 4 0 7 9 13 73 8 19 107 chain 15032 chr15 101991189 + 99078969 99079224 L1PREC2 3366 + 2661 2901 62224 90 3 1 53 1 0 45 1 0 3 3 0 14 29 21 13 chain 3643 chr15 101991189 + 99152670 99152711 MSTA 426 + 385 426 94071 41 chain 27614 chr15 101991189 + 99182951 99183312 THE1D-int 1627 + 0 367 45442 31 0 1 67 5 8 202 0 2 56 chain 19162 chr15 101991189 + 99191472 99191730 THE1B 368 + 111 368 57386 9 0 1 53 1 0 17 0 2 9 2 0 92 1 0 74 chain 114595 chr15 101991189 + 99191740 99193250 THE1B-int 1605 + 16 1572 16461 97 0 3 312 28 53 73 0 12 11 9 10 43 13 14 771 5 10 10 1 0 137 chain 24899 chr15 101991189 + 99193283 99193646 THE1B 368 + 0 368 49433 19 2 0 21 0 5 114 14 13 14 9 13 94 1 0 75 chain 3189 chr15 101991189 + 99199482 99199517 MLT2C2 476 + 433 468 97996 35 chain 7922 chr15 101991189 + 99232091 99232197 Tigger3b 1229 + 528 633 75069 14 0 1 27 3 0 58 0 1 4 chain 8774 chr15 101991189 + 99304100 99304210 MER58A 224 + 54 164 73051 110 chain 4326 chr15 101991189 + 99530967 99531027 L1MA9 1812 + 963 1060 89311 12 0 36 8 0 1 40 chain 66362 chr15 101991189 + 99596831 99597805 MER11C 1089 + 0 1064 24855 137 4 94 15 0 9 13 8 9 38 4 8 45 1 0 167 68 69 79 10 12 4 1 0 38 0 1 54 16 0 73 0 1 54 1 0 144 chain 5694 chr15 101991189 + 99633827 99633899 MER58A 224 + 46 118 82373 72 chain 99003 chr15 101991189 + 99665333 99666578 L1PA7 6471 + 5206 6454 18412 101 0 5 191 2 0 99 0 4 18 12 5 508 2 0 139 0 2 58 13 16 102 chain 12587 chr15 101991189 + 99742886 99743073 MER2 342 + 80 266 65818 20 20 19 147 chain 4211 chr15 101991189 + 99751720 99751800 MADE1 96 + 0 96 90057 47 1 17 32 chain 23907 chr15 101991189 + 99807257 99807552 AluSq10 312 + 2 298 50930 118 1 0 39 0 1 118 0 1 19 chain 6032 chr15 101991189 + 99842865 99842946 L1MA9 1812 + 1247 1331 80952 58 0 3 23 chain 61967 chr15 101991189 + 99855377 99856122 L1PA8A 6298 + 5528 6291 25872 205 1 0 440 0 19 99 chain 102481 chr15 101991189 + 99883080 99884245 L1PA4 6152 + 4982 6144 18012 708 8 4 307 2 3 140 chain 38849 chr15 101991189 + 99888127 99888609 MER9a1 513 + 0 513 35468 205 0 1 22 8 42 176 4 0 67 chain 6779 chr15 101991189 + 99893878 99893953 L1PA8 5853 - 431 506 78386 75 chain 28979 chr15 101991189 + 99893953 99894363 L1PA8 5853 + 5449 5853 43363 115 1 0 45 2 0 56 5 6 8 1 0 9 18 17 35 2 1 19 2 1 92 chain 10907 chr15 101991189 + 99908799 99908941 MER47B 469 + 292 433 68686 113 1 0 28 chain 4225 chr15 101991189 + 99982012 99982069 MIRb 242 + 60 115 89967 7 2 0 48 chain 108094 chr15 101991189 + 99990851 99992182 L1PA8 5853 + 4525 5847 17310 403 0 1 22 1 0 5 0 1 52 2 0 232 4 3 320 1 0 44 2 0 71 1 0 10 2 1 49 3 2 19 1 0 87 chain 89176 chr15 101991189 + 100046516 100047569 MER11C 1089 + 0 1063 19826 247 4 5 227 1 0 209 0 4 45 0 1 26 0 4 159 0 1 135 chain 455016 chr15 101991189 + 100067773 100072990 L1PA4 6152 + 7 5214 4259 1027 0 1 91 0 2 13 5 11 1191 0 2 1001 0 1 422 16 0 210 0 3 1161 12 3 68 chain 109617 chr15 101991189 + 100079597 100080969 HERVL-int 5654 + 4254 5654 17110 321 9 13 150 1 2 20 12 13 126 1 4 19 8 9 412 0 9 62 0 9 7 0 1 47 1 0 176 chain 31219 chr15 101991189 + 100080969 100081361 MLT2A1 477 + 0 397 40954 142 0 1 26 1 5 223 chain 461880 chr15 101991189 + 100083863 100089198 L1PA4 6152 + 7 5353 4083 687 1 0 651 1 0 56 0 1 368 10 7 724 0 1 280 8 13 429 0 1 117 5 8 1100 0 1 214 2 1 358 0 1 273 0 4 51 chain 44140 chr15 101991189 + 100130839 100131377 L1PA7 6471 + 5932 6470 32053 37 0 1 167 1 0 172 1 0 6 1 0 141 1 3 11 chain 81924 chr15 101991189 + 100146238 100147287 MER11C 1089 + 0 1063 21261 246 0 9 62 0 4 21 1 0 43 1 0 147 47 46 112 0 4 5 1 0 38 0 1 127 0 1 116 1 0 81 chain 25695 chr15 101991189 + 100197835 100198184 L1PA7 6471 + 6121 6470 48181 163 5 6 17 0 15 7 20 5 124 1 0 12 chain 4274 chr15 101991189 + 100295332 100295384 LTR50 688 + 94 146 89666 52 chain 28248 chr15 101991189 + 100302705 100303120 MLT2A1 477 + 0 407 44489 149 32 30 24 0 1 30 0 1 150 4 0 9 3 0 6 1 0 7 chain 273898 chr15 101991189 + 100355472 100359836 L1PBa 3878 + 188 3777 7610 49 3 1 11 4 6 271 1 0 98 0 1 77 0 3 56 2 3 229 307 0 293 0 1 14 0 5 308 5 0 232 0 1 58 455 11 225 0 1 90 0 1 473 0 2 188 8 10 134 0 1 98 30 6 75 3 0 494 1 0 21 34 26 11 1 0 5 chain 238656 chr15 101991189 + 100361638 100364469 L1PA7 6471 + 3631 6466 8501 1183 0 2 804 2 1 401 17 19 95 0 1 88 1 2 88 1 0 151 chain 16306 chr15 101991189 + 100364484 100364838 L1PB1 5432 + 5102 5424 60618 12 7 0 24 1 0 4 3 2 12 2 0 3 2 0 9 2 0 45 13 12 11 1 0 45 1 0 15 2 0 6 1 0 11 30 19 10 1 5 23 1 0 22 1 0 12 1 0 8 1 0 12 chain 542016 chr15 101991189 + 100365274 100371297 L1PA3long 6157 + 6 6157 1205 477 2 3 286 4 132 2204 1 0 1177 0 1 1604 10 8 254 0 1 4 chain 8050 chr15 101991189 + 100372157 100372304 L1PA16 3655 + 3424 3578 74753 26 1 0 4 31 39 85 chain 26954 chr15 101991189 + 100381116 100381534 LTR14A 344 + 0 344 46331 45 3 0 8 41 0 58 31 0 160 0 1 72 chain 126882 chr15 101991189 + 100414143 100415958 L1PA8 5853 + 4058 5853 14428 172 0 1 499 12 4 53 0 2 222 0 11 132 123 103 181 0 2 107 0 1 16 1 0 44 2 0 48 24 23 14 14 9 8 0 2 28 2 1 11 9 8 93 chain 553271 chr15 101991189 + 100417071 100423096 L1PA2 6032 + 3 6029 533 361 0 1 2500 0 1 182 0 1 243 1 0 2588 1 0 149 chain 101763 chr15 101991189 + 100435406 100436637 L1PA8 5853 + 4628 5853 18092 382 2 0 212 0 3 60 9 8 269 1 0 46 2 0 72 1 0 60 3 2 18 1 0 93 chain 26133 chr15 101991189 + 100440256 100440600 LTR7 482 + 0 475 47515 71 4 93 60 0 1 8 0 31 52 0 10 149 chain 317554 chr15 101991189 + 100440609 100444541 HERVH-int 3825 + 0 3825 6456 333 1 0 150 13 121 13 2 1 13 87 0 25 43 0 41 1 0 31 84 0 52 2 0 7 3 8 293 0 1 299 2 0 162 1 0 1034 1 0 5 0 1 1072 0 1 162 chain 29037 chr15 101991189 + 100445800 100446201 LTR7 482 + 0 482 43267 71 9 47 55 0 1 50 9 10 33 0 31 16 0 10 158 chain 16137 chr15 101991189 + 100463192 100463382 AluSc 308 + 38 228 60843 190 chain 12908 chr15 101991189 + 100534487 100534670 MER4A1 472 + 0 184 65238 29 2 1 24 12 14 116 chain 83955 chr15 101991189 + 100550445 100551497 MER11C 1089 + 0 1073 20817 220 0 5 22 9 18 52 0 4 65 1 0 304 7 9 38 0 1 127 0 1 54 1 0 144 0 1 8 chain 347454 chr15 101991189 + 100575307 100579179 L1PA5 6144 + 2263 6138 5944 1223 0 1 260 1 0 200 1 0 402 0 4 1785 chain 146459 chr15 101991189 + 100589293 100591611 MER57-int 2662 + 468 2494 12577 35 1 5 17 2 0 41 1 0 118 9 5 179 1 9 63 0 11 166 1 0 252 0 2 33 15 18 290 14 8 109 0 7 74 4 1 12 0 1 166 326 9 232 3 1 10 2 1 56 5 0 21 9 23 51 chain 24986 chr15 101991189 + 100591938 100592331 MER51B 395 + 9 382 49308 23 18 7 42 0 5 31 10 18 110 1 0 4 1 2 93 26 4 34 chain 5885 chr15 101991189 + 100638383 100638455 HY1 111 + 39 111 81539 72 chain 4009 chr15 101991189 + 100731899 100731945 MIRb 242 + 67 113 91380 46 chain 4416 chr15 101991189 + 100815715 100815813 L1MD 993 + 43 140 88802 33 30 29 35 chain 4206 chr15 101991189 + 101005564 101005839 L1MC4 1079 + 10 320 90078 41 204 239 30 chain 22741 chr15 101991189 + 101037808 101038233 L1PB1 5432 + 4903 5313 52771 28 2 3 148 38 35 18 1 0 8 2 1 11 8 4 9 1 0 52 20 18 43 1 0 15 2 0 6 1 0 11 chain 34371 chr15 101991189 + 101072486 101072924 LTR7 482 + 1 480 38448 225 21 0 10 0 52 28 0 10 154 chain 300737 chr15 101991189 + 101072961 101076581 HERVH-int 3825 + 21 3825 6804 509 1 0 11 1 0 4 0 1 24 1 0 10 1 0 9 25 15 14 1 0 12 4 1 25 1 0 30 2 0 5 7 6 16 21 0 66 0 1 4 2 0 409 0 4 32 15 0 456 4 31 585 0 1 282 1 0 5 0 1 530 0 210 44 1 0 4 1 2 445 chain 39282 chr15 101991189 + 101077838 101078293 LTR7 482 + 0 482 35158 52 4 0 178 0 31 221 chain 19881 chr15 101991189 + 101101718 101102060 LTR12F 595 + 0 400 56560 103 11 136 18 66 0 131 1 0 12 chain 147774 chr15 101991189 + 101401815 101403431 L1PA3long 6157 + 4541 6157 12500 1616 chain 5571 chr15 101991189 + 101413147 101413212 L1MDa 1598 + 1377 1442 82925 65 chain 27797 chr15 101991189 + 101415624 101415979 THE1A 353 + 0 353 45187 110 1 0 88 1 0 155 chain 90963 chr15 101991189 + 101415979 101417090 THE1A-int 1579 + 0 1112 19510 21 0 1 557 0 1 233 5 4 295 chain 6902 chr15 101991189 + 101417109 101417187 THE1A 353 + 120 198 77946 78 chain 11902 chr15 101991189 + 101417188 101417344 THE1A 353 + 198 353 67003 21 1 0 134 chain 41678 chr15 101991189 + 101550670 101551242 MER4A1_ 611 + 3 595 33570 18 0 5 44 12 27 28 2 0 70 0 1 103 0 2 6 2 0 219 16 17 52 chain 11714 chr15 101991189 + 101596333 101596514 L1PB 1623 + 540 733 67376 43 12 8 108 3 18 4 0 1 11 chain 551442 chr15 101991189 + 101626450 101632475 L1PA2 6032 + 2 6029 642 255 1 0 107 0 1 118 2 3 623 1 0 1914 0 1 68 0 1 2936 chain 4070 chr15 101991189 + 101657448 101657498 MLT1F2 592 + 510 560 90949 50 chain 7307 chr15 101991189 + 101691911 101692083 MLT2B1 522 + 318 515 76647 21 43 56 62 17 29 29 chain 17587 chr15 101991189 + 101721825 101722053 MER47A 366 + 65 295 59136 57 0 2 171 chain 34189 chr15 101991189 + 101797075 101797800 L1PB1 5432 + 4738 5420 38574 19 17 1 46 1 0 8 2 4 77 0 1 4 1 0 67 17 21 53 7 8 5 1 0 26 0 1 24 1 2 9 3 0 24 5 4 4 1 0 10 6 2 11 8 6 22 1 0 23 2 1 16 1 0 44 82 65 24 1 0 21 1 0 11 1 0 18 chain 14597 chr15 101991189 + 101861871 101862231 THE1B 368 + 2 368 62805 77 36 38 34 84 89 58 24 23 47 chain 23561 chr15 101991189 + 101865027 101865564 L2c 621 + 100 615 51488 24 26 14 35 15 16 68 70 77 9 9 0 60 1 0 113 18 12 53 11 13 11 4 0 10 chain 23307 chr15 101991189 + 101903520 101903788 L1PA5 6144 + 5872 6142 51920 70 0 2 198 chain 95530 chr15 101991189 + 101917248 101918287 L1PA2 6032 + 4993 6032 18838 1039 chain 28661 chr15 101991189 + 101919608 101919949 L1PA7 6471 + 6122 6465 43859 334 0 2 7 chain 6201 chr15 101991189 + 101944459 101944528 LTR12F 595 + 411 480 80352 69 chain 7367 chr15_KI270727v1_random 448248 + 34889 34980 U6 107 + 0 91 76488 91 chain 6986 chr15_KI270727v1_random 448248 + 35726 35839 L1PA16 3655 + 3402 3573 77651 44 0 1 12 12 69 45 chain 42575 chr15_KI270727v1_random 448248 + 41825 42298 L1PA4 6152 + 5135 5608 33021 473 chain 27053 chr15_KI270727v1_random 448248 + 85154 85722 LTR4 552 + 34 552 46193 30 40 49 68 1 0 11 12 11 115 78 7 50 51 66 23 1 0 88 chain 91225 chr15_KI270727v1_random 448248 + 123969 131051 L1PA7 6471 + 2277 6342 19462 160 0 1 5 1 0 189 17 0 51 4 5 20 0 3 9 5664 2649 220 4 5 27 1 0 53 0 1 18 18 26 589 1 3 31 chain 72131 chr15_KI270727v1_random 448248 + 208442 209221 L1PA3long 6157 + 5370 6149 23502 779 chain 9581 chr15_KI270727v1_random 448248 + 210087 210206 MER4A1 472 + 0 121 71303 99 0 2 20 chain 55852 chr15_KI270727v1_random 448248 + 285097 285790 L1PA7 6471 + 5784 6468 27608 449 2 0 57 2 0 5 13 15 147 7 0 11 chain 33442 chr15_KI270727v1_random 448248 + 297042 297409 L1PA4 6152 + 5774 6143 39140 355 0 2 12 chain 18881 chr15_KI270727v1_random 448248 + 399552 399797 L1PA15 4387 + 3210 3455 57663 15 1 0 119 0 1 110 chain 41157 chr16 90338345 + 41011 41490 LTR15 485 + 0 485 33870 70 0 1 301 0 5 108 chain 22732 chr16 90338345 + 74662 75026 LTR7 482 + 0 482 52780 23 0 23 20 15 70 64 1 11 10 1 2 16 1 0 21 1 32 13 0 1 59 1 2 22 3 0 93 chain 17092 chr16 90338345 + 88228 88411 AluYb8 318 + 129 312 59705 183 chain 22227 chr16 90338345 + 148188 148464 AluY 311 + 12 295 53510 32 1 7 81 0 1 162 chain 16057 chr16 90338345 + 303180 303375 MER61A 341 + 0 196 60952 180 0 1 15 chain 106155 chr16 90338345 + 341083 342390 LTR12C 1709 + 0 1709 17550 211 2 5 291 0 20 123 0 278 184 1 0 4 4 2 99 7 11 212 0 101 77 15 14 77 chain 4128 chr16 90338345 + 777658 777709 MER49 923 + 220 271 90598 51 chain 21133 chr16 90338345 + 1295146 1295901 MER4D 903 + 306 776 54968 93 330 36 114 27 29 75 91 98 25 chain 6333 chr16 90338345 + 1360638 1360758 MER1B 344 + 215 339 79886 46 33 37 41 chain 5363 chr16 90338345 + 1421826 1421884 LTR8 732 + 300 358 83891 58 chain 135928 chr16 90338345 + 1598777 1600473 SVA_F 1814 + 335 1814 13442 552 48 0 61 179 14 39 1 0 4 1 0 182 1 0 617 1 0 10 chain 3041 chr16 90338345 + 1599339 1599377 SVA_F 1814 + 898 936 50547 38 chain 15382 chr16 90338345 + 1599438 1599617 SVA_F 1814 + 899 1089 45368 48 0 15 39 3 0 10 1 0 78 chain 22296 chr16 90338345 + 1705386 1705670 AluSz 310 + 5 305 53413 127 0 1 5 4 19 148 chain 20598 chr16 90338345 + 1721068 1721326 AluSp 311 + 13 301 55635 90 0 1 25 0 3 120 0 26 23 chain 76911 chr16 90338345 + 1797189 1799390 THE1C-int 1605 + 18 1597 22342 93 3 57 36 0 2 69 0 4 56 0 2 76 1143 459 41 1 0 4 3 4 90 22 23 72 3 0 190 0 3 130 1 0 168 chain 20525 chr16 90338345 + 1825042 1825284 AluSx4 309 + 6 248 55750 117 1 0 113 0 1 11 chain 4095 chr16 90338345 + 1833916 1833962 L1P1 4361 + 2809 2855 90808 46 chain 24438 chr16 90338345 + 1846516 1846874 L1PA8 5853 + 5410 5762 50117 151 8 7 41 2 0 69 2 1 13 2 1 47 2 1 21 chain 89940 chr16 90338345 + 1930828 1931857 LTR5A 1029 + 0 1029 19695 73 0 1 73 1 0 882 chain 39308 chr16 90338345 + 2301826 2302301 MER9a1 513 + 0 513 35141 123 0 16 105 2 24 245 chain 50727 chr16 90338345 + 2419500 2420056 L1PA2 6032 + 5476 6032 29304 556 chain 4109 chr16 90338345 + 2458765 2458840 MIRb 242 + 102 178 90706 25 16 17 34 chain 6224 chr16 90338345 + 2781925 2782035 MER41D 557 + 460 557 80262 60 13 0 14 5 6 4 1 0 13 chain 26351 chr16 90338345 + 2845686 2846560 MER4B 649 + 0 513 47199 29 1 0 83 1 0 4 3 5 38 8 9 18 8 31 90 0 1 14 344 0 20 1 16 66 4 1 13 98 44 31 chain 15461 chr16 90338345 + 2864500 2864757 AluJr4 308 + 34 292 61708 92 59 60 106 chain 44901 chr16 90338345 + 2907334 2907834 LTR2C 499 + 0 499 31640 441 1 0 58 chain 5689 chr16 90338345 + 2926761 2926909 HERVK-int 6823 + 559 715 82394 39 20 32 26 35 32 19 1 0 8 chain 4129 chr16 90338345 + 3082164 3082215 U1 164 + 0 51 90586 51 chain 34249 chr16 90338345 + 3085291 3085762 LTR15 485 + 4 478 38525 59 2 1 86 0 2 124 4 8 153 1 0 5 10 8 6 0 1 21 chain 8164 chr16 90338345 + 3086200 3086300 U1 164 + 64 164 74496 100 chain 7021 chr16 90338345 + 3150673 3150746 tRNA-Arg-CGG 73 + 0 73 77530 73 chain 6044 chr16 90338345 + 3152899 3152964 tRNA-Arg-AGG 67 + 0 65 80913 65 chain 6948 chr16 90338345 + 3158921 3158993 tRNA-Pro-CCA 73 + 0 72 77783 72 chain 5253 chr16 90338345 + 3160384 3160479 tRNA-Pro-CCY 72 + 0 72 84430 36 27 4 32 chain 24859 chr16 90338345 + 3160809 3161086 AluY 311 + 29 307 49508 96 0 1 181 chain 6957 chr16 90338345 + 3172047 3172119 tRNA-Pro-CCG 72 + 0 72 77752 72 chain 4120 chr16 90338345 + 3175690 3175733 tRNA-Lys-AAG 49 + 0 43 90657 43 chain 36761 chr16 90338345 + 3177174 3177620 LTR10F 562 + 0 562 36915 133 0 116 313 chain 6948 chr16 90338345 + 3188093 3188165 tRNA-Pro-CCA 73 + 0 72 77782 72 chain 6948 chr16 90338345 + 3189633 3189705 tRNA-Pro-CCY 72 + 0 72 77787 72 chain 3998 chr16 90338345 + 3191500 3191543 tRNA-Lys-AAG 49 + 0 43 91468 43 chain 6817 chr16 90338345 + 3191988 3192060 tRNA-Pro-CCY 72 + 0 72 78255 72 chain 5660 chr16 90338345 + 3193917 3193982 tRNA-Arg-AGG 67 + 0 65 82514 65 chain 86607 chr16 90338345 + 3205534 3206647 MER11A 1151 + 0 1141 20298 196 1 0 4 6 7 21 1 0 64 14 9 87 0 1 107 0 3 299 9 8 26 9 32 134 0 8 135 chain 6762 chr16 90338345 + 3275911 3275988 LTR45C 530 + 0 77 78441 77 chain 47773 chr16 90338345 + 3331699 3332232 L1PA3long 6157 + 5620 6153 30371 533 chain 74658 chr16 90338345 + 3385315 3386141 L1PA4 6152 + 4511 5341 22921 793 0 4 33 chain 23914 chr16 90338345 + 3395306 3395649 THE1C 375 + 6 373 50925 81 0 1 50 1 5 10 26 45 175 chain 23156 chr16 90338345 + 3449683 3450023 THE1B 368 + 1 368 52134 37 2 17 48 0 1 64 2 0 30 0 1 15 29 41 113 chain 77929 chr16 90338345 + 3527107 3528111 LTR13 1007 + 0 1007 22115 73 2 0 308 4 5 307 2 6 81 12 14 6 2 0 15 0 1 159 2 1 31 chain 5402 chr16 90338345 + 3559095 3559160 MER101 471 + 406 471 83699 65 chain 10485 chr16 90338345 + 3585603 3585729 L1MB7 1623 + 1058 1184 69439 126 chain 9360 chr16 90338345 + 3617846 3617987 MLT1A0 366 + 218 366 71784 23 11 13 39 0 5 68 chain 5135 chr16 90338345 + 3859120 3859180 MER21B 843 + 19 79 84992 60 chain 87234 chr16 90338345 + 3886374 3887312 L1PA3long 6157 + 4236 5174 20186 938 chain 80320 chr16 90338345 + 3918041 3919098 MER11C 1089 + 0 1073 21570 246 0 9 62 0 4 65 1 0 36 3 2 260 0 1 5 1 5 4 1 0 38 0 1 127 0 1 54 1 0 26 10 9 109 0 1 8 chain 26677 chr16 90338345 + 3940063 3941590 Tigger3b 1229 + 345 941 46719 71 11 13 97 0 2 35 2 0 12 0 13 7 645 30 15 9 8 20 0 2 5 0 1 4 17 9 74 2 0 5 400 73 23 14 18 59 chain 64862 chr16 90338345 + 3941947 3942689 L1PA6 6164 + 5417 6159 25225 742 chain 4447 chr16 90338345 + 4010936 4010995 MLT1A1 405 + 263 321 88624 19 2 1 38 chain 3566 chr16 90338345 + 4029298 4029364 MADE2 80 + 1 67 94686 16 2 1 22 4 5 22 chain 3303 chr16 90338345 + 4105096 4105135 Charlie1b 519 + 219 258 96991 39 chain 24062 chr16 90338345 + 4122465 4122777 AluY 311 + 6 311 50706 102 1 2 189 8 0 12 chain 5835 chr16 90338345 + 4128412 4128522 MLT1B 390 + 230 346 81763 44 26 32 40 chain 67361 chr16 90338345 + 4156308 4157062 L1PA7 6471 + 5707 6461 24609 754 chain 10755 chr16 90338345 + 4243926 4244053 MER61-int 3695 + 1483 1610 68946 127 chain 27809 chr16 90338345 + 4247466 4247881 LTR3B 427 + 0 427 45171 173 6 28 68 33 30 33 9 3 13 1 0 79 chain 39203 chr16 90338345 + 4330780 4331594 MER9a3 513 + 0 513 35212 171 1 0 8 321 0 91 0 18 189 7 9 4 0 1 22 chain 24920 chr16 90338345 + 4425048 4425346 AluSg7 307 + 5 302 49399 79 1 0 48 1 0 125 0 1 44 chain 3044 chr16 90338345 + 4447650 4447707 LTR16E1 515 + 379 452 99387 14 6 23 30 1 0 6 chain 9509 chr16 90338345 + 4470553 4470665 AluSg4 309 + 22 134 71453 112 chain 3749 chr16 90338345 + 4472083 4472131 L1MB7 1623 + 1376 1423 93244 15 1 0 32 chain 10481 chr16 90338345 + 4487401 4487522 AluSp 311 + 13 134 69448 121 chain 18162 chr16 90338345 + 4539129 4539360 LTR8 732 + 0 232 58499 27 0 2 143 1 0 60 chain 5054 chr16 90338345 + 4545583 4545799 MER31B 477 + 200 428 85396 37 105 110 24 26 33 24 chain 9753 chr16 90338345 + 4557396 4557581 L1MB5 1630 + 1362 1549 70923 21 10 9 56 0 5 17 37 35 44 chain 6055 chr16 90338345 + 4569352 4569465 LTR36 617 + 0 124 80882 27 23 37 8 3 0 52 chain 3096 chr16 90338345 + 4751638 4751708 MLT1C 463 + 51 123 98822 5 0 1 27 22 23 16 chain 3602 chr16 90338345 + 5018072 5018110 MIR 256 + 95 133 94406 38 chain 10713 chr16 90338345 + 5019095 5019287 MER30 238 + 34 238 69022 56 32 41 22 1 7 38 3 0 40 chain 13582 chr16 90338345 + 5038764 5039012 L1PB1 5432 + 5034 5281 64193 45 0 4 11 5 11 9 1 0 24 1 0 9 1 0 10 6 2 8 2 0 41 17 16 12 1 0 45 chain 7008 chr16 90338345 + 5064159 5064284 MER1A 529 + 403 529 77576 35 27 28 63 chain 25741 chr16 90338345 + 5070805 5071161 THE1B 368 + 0 368 48105 44 11 24 101 6 5 194 chain 4074 chr16 90338345 + 5101872 5101919 MLT1C 463 + 63 110 90930 47 chain 11971 chr16 90338345 + 5155560 5155705 MER4A1 472 + 35 182 66883 11 0 2 134 chain 32989 chr16 90338345 + 5155705 5156076 L1PA2 6032 + 5659 6030 39522 371 chain 73661 chr16 90338345 + 5161321 5162385 MER11A 1151 + 0 1144 23181 55 1 100 75 1 0 58 10 6 32 0 4 113 0 1 93 1 2 145 2 3 111 0 5 32 24 0 12 9 16 23 18 0 34 0 1 60 6 7 6 0 1 71 3 9 69 chain 24152 chr16 90338345 + 5170485 5170828 THE1B 368 + 0 359 50571 40 0 15 114 1 0 74 5 6 38 2 1 9 6 8 54 chain 30542 chr16 90338345 + 5180477 5180954 MER4A1 472 + 0 472 41530 15 12 14 192 27 23 16 14 15 125 10 6 66 chain 83225 chr16 90338345 + 5275350 5276480 L1PB1 5432 + 3617 4770 20978 77 1 9 17 1 6 396 0 1 35 1 0 44 9 11 171 3 4 171 4 6 41 1 5 17 1 2 140 chain 25970 chr16 90338345 + 5283934 5284292 THE1B 368 + 0 368 47762 44 13 28 104 1 0 152 5 1 39 chain 15098 chr16 90338345 + 5391933 5392266 L1PB1 5432 + 5114 5416 62158 24 1 0 7 2 1 12 4 0 10 2 0 9 0 1 42 18 16 45 1 0 15 3 0 6 16 6 19 2 0 5 9 8 6 2 0 24 1 0 13 9 8 13 1 0 12 chain 11910 chr16 90338345 + 5547727 5547869 L1PA16 3655 + 3421 3563 66983 142 chain 28990 chr16 90338345 + 5552934 5553291 L1PA6 6164 + 5806 6161 43342 25 0 1 321 3 0 8 chain 3835 chr16 90338345 + 5555550 5555598 MADE1 96 + 45 94 92599 24 0 1 24 chain 32104 chr16 90338345 + 5571493 5571892 LTR3 431 + 15 431 40269 72 0 17 327 chain 39157 chr16 90338345 + 5592917 5593898 MER41A 554 + 17 554 35245 139 453 0 193 5 8 39 0 1 4 1 0 4 0 4 61 9 11 73 chain 37806 chr16 90338345 + 5593064 5593502 L1PA7 6471 + 6033 6467 36199 426 4 0 8 chain 20776 chr16 90338345 + 5656822 5657098 L1PA8 5853 + 5583 5853 55396 25 2 0 74 1 0 6 1 0 52 2 1 19 1 0 93 chain 13917 chr16 90338345 + 5676001 5676251 L1PA8 5853 + 5608 5853 63714 48 48 40 39 7 6 19 1 0 65 0 5 23 chain 115326 chr16 90338345 + 5809020 5810335 L1PA3long 6157 + 4843 6157 16339 541 1 0 611 7 6 6 0 1 149 chain 29215 chr16 90338345 + 5814646 5814962 AluYb8 318 + 0 315 43025 132 1 0 183 chain 12566 chr16 90338345 + 5822137 5822419 L1PB1 5432 + 5161 5420 65863 8 2 0 53 1 0 15 1 0 44 1 0 15 1 0 4 79 65 5 1 0 21 1 0 13 1 0 16 chain 4951 chr16 90338345 + 5884488 5884565 MLT1J1 437 + 47 125 85887 42 7 8 28 chain 3060 chr16 90338345 + 5953875 5953927 MER53 195 - 106 159 99217 14 7 8 31 chain 40556 chr16 90338345 + 6115924 6116422 L1PA7 6471 + 5964 6464 34262 188 5 6 164 0 1 141 chain 4381 chr16 90338345 + 6227876 6227924 L1MA8 2339 + 1730 1778 88989 48 chain 26391 chr16 90338345 + 6235402 6235992 L1PB1 5432 + 4965 5420 47132 112 3 6 16 133 23 12 1 0 12 1 0 12 15 9 53 2 1 60 1 0 15 25 12 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 10 0 2 17 chain 21680 chr16 90338345 + 6249269 6249552 AluSg7 307 + 25 300 54255 101 0 1 160 9 0 13 chain 26238 chr16 90338345 + 6255662 6256052 L1PA8 5853 + 5465 5853 47364 50 1 0 49 7 6 8 0 1 29 2 0 74 1 0 58 2 1 19 3 2 44 0 4 43 chain 3745 chr16 90338345 + 6403138 6403260 MER5A1 166 + 27 165 93295 37 26 40 14 2 0 6 20 24 17 chain 26176 chr16 90338345 + 6444329 6444692 THE1B 368 + 0 368 47465 78 1 0 4 0 1 86 1 0 31 2 0 102 12 20 46 chain 23725 chr16 90338345 + 6453404 6453684 L1P3 4156 + 3678 3956 51237 155 1 0 79 1 0 44 chain 6005 chr16 90338345 + 6578847 6579041 L1PB1 5432 + 5263 5430 81057 18 1 0 15 1 0 4 2 0 10 9 0 3 0 1 9 31 21 20 7 6 22 2 1 11 1 0 10 2 1 8 1 0 7 chain 3639 chr16 90338345 + 6652804 6652848 L1MB3 1562 + 1461 1505 94105 44 chain 7929 chr16 90338345 + 6701652 6701811 L1PA15 4387 + 4209 4356 75048 8 3 0 50 6 3 41 23 17 28 chain 8137 chr16 90338345 + 6725493 6725587 MER41B 635 + 363 457 74547 94 chain 12691 chr16 90338345 + 6765540 6765875 L1PB3 3668 + 3235 3565 65637 56 1 0 39 7 0 28 28 47 23 68 54 18 1 0 3 1 0 25 19 19 18 chain 4464 chr16 90338345 + 6837947 6838010 MER66A 478 + 136 200 88535 42 4 5 17 chain 14523 chr16 90338345 + 6936931 6937102 L1PA2 6032 + 5858 6026 62875 158 3 0 10 chain 43407 chr16 90338345 + 6959966 6960526 PABL_B 668 + 100 668 32498 134 1 2 183 0 4 8 1 4 233 chain 10385 chr16 90338345 + 7018666 7018798 L1PA5 6144 + 6010 6144 69646 120 1 3 11 chain 10939 chr16 90338345 + 7212696 7212836 L1PA8 5853 + 5715 5853 68634 29 1 0 16 2 1 92 chain 21463 chr16 90338345 + 7215221 7215476 L1PA8 5853 + 5247 5502 54563 255 chain 30086 chr16 90338345 + 7426910 7427269 L1PA5 6144 + 5780 6138 41968 185 5 4 169 chain 4642 chr16 90338345 + 7485872 7485928 MER58A 224 + 49 105 87581 56 chain 5205 chr16 90338345 + 7608656 7608717 MIR 256 + 76 137 84655 61 chain 146971 chr16 90338345 + 7727413 7729917 L1PA2 6032 + 3521 6032 12544 624 7 0 139 0 5 142 0 9 1592 chain 54141 chr16 90338345 + 7763721 7764484 MER4E 760 + 0 760 28176 49 9 0 115 1 0 173 9 2 30 8 10 55 1 0 15 14 18 124 24 29 116 0 2 12 0 2 8 chain 14228 chr16 90338345 + 7776188 7776548 THE1B 368 + 0 368 63295 10 0 4 63 57 58 34 66 71 66 14 13 29 5 4 16 chain 31450 chr16 90338345 + 7787761 7788194 MLT2A1 477 + 0 477 40772 169 4 1 9 0 1 22 0 1 162 0 7 13 4 0 7 10 48 27 0 4 6 chain 36580 chr16 90338345 + 7813783 7814430 LTR9B 643 + 0 643 37023 118 1 2 12 5 6 63 7 6 126 24 25 61 45 44 45 1 15 18 7 0 34 2 0 7 10 1 11 15 14 35 chain 20505 chr16 90338345 + 7814736 7815094 LTR7 482 + 0 482 55779 43 36 74 15 2 53 39 8 40 25 5 6 124 12 14 49 chain 273713 chr16 90338345 + 7815096 7818735 HERVH-int 3825 + 0 3825 7617 212 0 11 110 1 0 201 1 0 7 1 0 4 0 1 24 1 21 12 7 1 15 0 37 27 2 0 15 2 1 21 105 0 59 0 1 5 3 1 443 15 0 57 0 1 4 1 0 56 58 58 24 1 0 256 4 31 222 5 0 77 0 10 112 0 3 45 0 1 4 0 1 879 9 11 39 8 218 260 0 2 225 chain 891 chr16 90338345 + 7815779 7815813 HERVH-int 3825 + 657 691 98444 34 chain 41968 chr16 90338345 + 7822510 7823055 MER41A 554 + 0 554 33374 28 0 3 8 9 10 419 0 5 81 chain 30421 chr16 90338345 + 7865547 7865962 L1PA8 5853 + 5440 5847 41661 124 4 3 41 2 0 80 1 0 23 7 5 26 1 0 18 1 0 87 chain 22082 chr16 90338345 + 7875168 7875415 L1HS 6032 + 5792 6032 53726 234 7 0 6 chain 13952 chr16 90338345 + 7947106 7947378 L1PB1 5432 + 5174 5422 63666 46 2 1 15 1 0 45 1 0 9 31 18 19 7 4 15 3 1 23 1 0 21 1 0 13 1 0 18 chain 8971 chr16 90338345 + 7952989 7953107 MER85 139 + 18 139 72627 29 0 4 37 1 0 51 chain 105838 chr16 90338345 + 8001998 8003382 L1PA8A 6298 + 4898 6291 17587 88 9 1 236 0 1 66 18 3 9 0 16 11 0 1 157 1 0 18 1 2 66 0 1 179 17 31 303 1 0 204 chain 46269 chr16 90338345 + 8009132 8009650 L1PA3long 6157 + 5634 6152 30937 518 chain 32105 chr16 90338345 + 8044841 8045282 MER41B 635 + 0 451 40267 88 2 7 30 1 2 279 17 21 24 chain 270499 chr16 90338345 + 8057919 8060801 L1HS 6032 + 3150 6032 7695 2882 chain 33681 chr16 90338345 + 8060819 8061193 L1PA3long 6157 + 5774 6157 38944 340 0 9 34 chain 30360 chr16 90338345 + 8102201 8102620 L1PA8 5853 + 5439 5852 41705 125 1 0 44 2 0 70 6 5 5 1 0 35 1 2 15 2 1 19 1 0 92 chain 122950 chr16 90338345 + 8114395 8115932 SVA_D 2077 + 16 2074 15033 640 0 37 12 37 0 20 55 15 27 3 1 30 0 3 16 0 40 35 1 519 285 0 2 376 chain 2197 chr16 90338345 + 8115047 8115084 SVA_D 2077 + 512 549 53714 37 chain 3266 chr16 90338345 + 8115104 8115159 SVA_D 2077 + 569 624 53714 55 chain 5007 chr16 90338345 + 8159404 8159534 MER1B 344 + 203 344 85624 15 57 68 58 chain 35693 chr16 90338345 + 8225302 8225712 L1PA5 6144 + 3553 3963 37607 410 chain 19827 chr16 90338345 + 8292524 8293222 L1MA8 2339 + 1606 2266 56645 17 64 60 153 20 17 20 10 9 49 5 0 24 2 0 12 224 195 19 44 38 12 0 13 12 1 0 10 chain 32909 chr16 90338345 + 8372532 8372978 L1PA8 5853 + 5412 5853 39579 103 1 2 47 1 0 45 2 0 69 11 10 54 1 0 18 1 0 93 chain 23021 chr16 90338345 + 8410315 8410689 L1PB3 3668 + 3204 3566 52329 76 11 21 89 2 1 84 23 7 17 2 0 4 1 0 25 3 1 37 chain 20346 chr16 90338345 + 8412039 8412428 L1PB1 5432 + 5032 5391 55951 71 3 2 9 3 0 24 1 0 9 16 11 9 2 0 52 1 0 18 1 0 44 1 0 15 3 0 7 14 5 19 21 19 24 1 0 21 chain 10608 chr16 90338345 + 8526609 8526757 MSTA 426 + 257 413 69216 43 11 19 94 chain 7887 chr16 90338345 + 8586965 8587157 MER63A 208 + 0 185 75161 26 64 67 77 10 0 15 chain 18554 chr16 90338345 + 8651783 8652028 L1PA8 5853 + 5610 5853 58043 130 2 1 19 1 0 93 chain 23413 chr16 90338345 + 8870360 8870638 AluYc 301 + 0 276 51738 113 2 4 127 4 0 32 chain 24306 chr16 90338345 + 8965268 8965564 AluSp 311 + 5 298 50321 213 6 1 44 0 2 33 chain 112274 chr16 90338345 + 8981466 8982730 SVA_C 1631 + 20 1627 16781 5 0 1 4 0 1 6 0 5 14 3 0 654 0 336 491 0 3 87 chain 23952 chr16 90338345 + 9012683 9012971 AluSp 311 + 4 294 50862 128 1 0 143 0 2 4 0 1 12 chain 24013 chr16 90338345 + 9033068 9033381 THE1-int 844 + 514 826 50774 124 0 6 57 5 0 14 0 1 55 2 0 34 1 0 21 chain 4976 chr16 90338345 + 9084720 9084821 7SLRNA 320 + 166 273 85778 10 1 0 4 3 8 13 6 7 36 1 2 27 chain 26300 chr16 90338345 + 9163984 9164268 AluYg6 310 + 19 303 47269 284 chain 54202 chr16 90338345 + 9166490 9167092 SVA_A 1864 + 1273 1864 28156 56 11 0 535 chain 4928 chr16 90338345 + 9168657 9168748 MLT1C 463 + 169 256 86011 30 22 18 39 chain 29756 chr16 90338345 + 9237565 9237941 MSTA 426 + 30 407 42296 173 2 3 201 chain 52968 chr16 90338345 + 9244161 9244828 PABL_B 668 + 0 668 28587 236 0 1 6 1 0 188 1 4 151 13 11 71 chain 59020 chr16 90338345 + 9294235 9294886 L1PA3long 6157 + 3145 3795 26659 44 1 0 606 chain 44002 chr16 90338345 + 9396554 9397266 L1PA15 4387 + 3669 4356 32128 144 2 0 14 4 0 18 0 1 11 18 19 14 2 0 43 1 0 171 1 0 26 1 0 54 2 1 21 4 0 10 2 1 39 20 17 40 2 0 14 6 1 28 chain 6388 chr16 90338345 + 9403509 9403625 MER5A1 166 + 8 124 79717 14 10 9 44 10 11 38 chain 35487 chr16 90338345 + 9411144 9411720 LTR8 732 + 99 698 37735 37 1 0 57 0 1 214 83 90 36 15 34 43 3 0 87 chain 5915 chr16 90338345 + 9475159 9475236 L1MA8 2339 + 1991 2067 81419 20 1 0 56 chain 10256 chr16 90338345 + 9616438 9616566 MER85 139 + 1 139 69888 89 0 10 39 chain 9376 chr16 90338345 + 9624699 9624814 MSTA 426 + 301 416 71757 115 chain 4737 chr16 90338345 + 9656137 9656195 MER3 215 + 55 113 87030 58 chain 21131 chr16 90338345 + 9684104 9684379 MER41E 591 + 0 276 54970 127 1 0 104 6 8 37 chain 24429 chr16 90338345 + 9710335 9710649 L1PREC2 3366 + 2030 2343 50130 6 2 0 157 0 4 122 3 0 24 chain 41015 chr16 90338345 + 9795067 9795605 MER41A 554 + 0 553 33958 24 0 1 65 1 0 70 5 1 210 11 30 152 chain 16969 chr16 90338345 + 9838235 9838531 L1PB3 3668 + 3281 3555 59832 10 1 0 99 2 1 87 20 4 18 10 8 20 8 6 21 chain 43176 chr16 90338345 + 9875964 9876606 LTR14B 630 + 10 630 32667 223 16 0 55 7 32 71 0 9 13 42 12 11 8 0 78 2 0 116 chain 2969 chr16 90338345 + 9911993 9912031 MIR 256 + 151 189 100201 38 chain 4166 chr16 90338345 + 9955469 9955550 MADE1 96 + 0 96 90344 20 21 36 40 chain 123865 chr16 90338345 + 9961867 9963271 L1PA4 6152 + 4729 6143 14871 61 0 16 776 9 1 419 1 3 138 chain 27736 chr16 90338345 + 9974311 9974651 LTR2 463 + 122 463 45269 238 14 15 88 chain 27434 chr16 90338345 + 9985377 9985891 L1MA3 4352 + 3763 4260 45658 72 0 4 146 16 18 18 8 0 55 83 61 33 1 4 15 0 12 2 8 0 14 0 4 15 4 0 24 chain 28540 chr16 90338345 + 9991689 9992066 L1PA8 5853 + 5483 5853 44051 81 1 0 44 2 0 71 1 0 14 5 4 43 2 1 19 1 0 93 chain 30273 chr16 90338345 + 9999347 9999752 L1PA7 6471 + 6063 6469 41788 12 0 2 220 1 2 9 1 2 82 0 2 6 3 1 56 3 0 12 chain 10143 chr16 90338345 + 10012541 10012664 MLT1D 503 + 6 130 70122 19 0 1 104 chain 38697 chr16 90338345 + 10050275 10050785 MER1A 529 + 1 515 35562 10 1 0 6 2 3 371 0 3 59 7 8 54 chain 19817 chr16 90338345 + 10062902 10063171 L1PA16 3655 + 3269 3537 56651 21 2 0 108 4 5 134 chain 73961 chr16 90338345 + 10097737 10098916 L1PB1 5432 + 4261 5404 23104 173 0 1 65 1 0 4 1 2 53 0 1 9 0 3 57 1 0 4 26 7 113 0 1 58 0 2 266 28 27 7 5 0 20 1 0 13 1 0 8 24 18 46 1 0 17 1 0 44 1 0 6 26 22 19 11 8 11 2 0 24 1 0 11 0 3 20 chain 19221 chr16 90338345 + 10134405 10134638 L1PA6 6164 + 5933 6162 57326 223 4 0 6 chain 11501 chr16 90338345 + 10152721 10153047 L1MC1 2226 + 1859 2149 67743 28 34 27 66 3 0 15 2 0 52 105 82 5 1 0 15 chain 33448 chr16 90338345 + 10176476 10176844 L1PA5 6144 + 5761 6129 39131 368 chain 26853 chr16 90338345 + 10186468 10187232 MLT2A2 560 + 0 558 46470 116 0 6 58 1 0 13 30 33 14 7 6 56 2 111 25 4 8 53 327 0 6 0 1 52 chain 15925 chr16 90338345 + 10190815 10191010 L1PA7 6471 + 6270 6465 61122 195 chain 78352 chr16 90338345 + 10258668 10259634 LTR13A 966 + 0 966 22015 128 0 1 256 1 0 385 0 1 98 1 0 97 chain 42180 chr16 90338345 + 10277665 10278141 HERV-Fc1_LTR3 475 + 0 475 33262 326 1 0 149 chain 5072 chr16 90338345 + 10283074 10283136 MER39B 650 + 563 624 85297 57 1 0 4 chain 25595 chr16 90338345 + 10283160 10283542 LTR7 482 + 0 475 48325 69 8 46 109 9 41 20 11 10 12 0 1 28 0 4 30 0 19 86 chain 222569 chr16 90338345 + 10283552 10286701 HERVH-int 3825 + 0 3118 8967 71 0 13 249 1 0 32 0 1 36 80 88 23 4 0 8 68 9 15 0 1 12 172 192 30 1 0 58 0 3 397 15 0 362 1 0 180 19 21 579 0 6 6 7 1 344 1 0 32 0 2 283 0 1 63 chain 30392 chr16 90338345 + 10294832 10295234 LTR7 482 + 0 474 41683 68 9 47 109 0 1 29 3 34 17 0 1 23 0 1 144 chain 7416 chr16 90338345 + 10315848 10315937 MER4A1_ 611 + 1 91 76357 51 0 1 38 chain 3825 chr16 90338345 + 10333093 10333136 MER34D 576 + 423 466 92677 43 chain 39243 chr16 90338345 + 10342221 10342704 MER41A 554 + 69 552 35182 483 chain 6566 chr16 90338345 + 10363281 10363361 LTR24C 604 + 258 339 79100 39 0 1 41 chain 22469 chr16 90338345 + 10365912 10366211 AluYa5 310 + 12 310 53164 36 11 11 5 2 0 21 12 13 212 chain 3750 chr16 90338345 + 10397873 10397919 L1MA8 2339 + 1485 1531 93237 46 chain 28089 chr16 90338345 + 10413168 10413523 THE1A 353 + 0 353 44734 110 1 0 92 1 0 151 chain 207162 chr16 90338345 + 10477368 10479661 L1PA3long 6157 + 3886 6157 9456 169 22 0 222 4 0 1027 0 4 849 chain 20142 chr16 90338345 + 10479664 10479913 L1PA8A 6298 + 5504 5757 56202 64 0 2 96 0 2 89 chain 33065 chr16 90338345 + 10485789 10486266 LTR10A 586 + 23 574 39461 14 0 1 21 0 8 7 0 1 26 24 32 7 1 0 38 1 59 210 1 0 65 1 2 50 1 0 10 chain 46910 chr16 90338345 + 10489446 10490477 HERVIP10F-int 4088 + 1294 2323 30697 9 6 0 27 127 133 13 22 23 17 44 46 35 111 106 27 16 18 29 0 3 285 1 0 20 1 0 65 2 1 83 16 15 61 2 1 12 chain 8686 chr16 90338345 + 10496269 10496374 U6 107 + 2 107 73243 105 chain 30581 chr16 90338345 + 10500746 10501555 PABL_A 660 + 2 433 41488 37 0 3 26 0 12 87 2 0 93 6 5 12 399 0 96 1 10 50 chain 12267 chr16 90338345 + 10502308 10502479 MER41B 635 + 0 174 66341 93 1 0 28 4 8 45 chain 27028 chr16 90338345 + 10504189 10504609 MER4A 717 + 0 488 46229 33 1 0 90 28 0 51 4 80 6 0 3 74 7 24 94 4 5 28 chain 38452 chr16 90338345 + 10505206 10506369 MER41A 554 + 13 554 35755 22 1 2 50 8 11 187 367 10 24 1 0 60 268 0 175 chain 3962 chr16 90338345 + 10583424 10583467 MLT1H2 457 + 89 132 91686 43 chain 22878 chr16 90338345 + 10608259 10608562 MER1A 529 + 223 529 52537 234 2 0 5 5 9 11 0 1 46 chain 39782 chr16 90338345 + 10680580 10681019 L1PA3long 6157 + 5718 6157 34836 439 chain 15284 chr16 90338345 + 10782194 10782427 MER83 447 + 157 403 61933 24 2 1 143 0 1 4 19 32 41 chain 16368 chr16 90338345 + 10785748 10785943 LTR14 556 + 360 556 60552 84 1 2 110 chain 12165 chr16 90338345 + 10791405 10791608 LTR9 672 + 68 248 66536 29 1 0 70 0 1 28 1 0 5 23 0 8 4 5 34 chain 3291 chr16 90338345 + 10922763 10922837 MADE2 80 - 0 74 97098 23 11 0 9 9 20 22 chain 4078 chr16 90338345 + 11226067 11226116 MIR3 191 + 69 118 90896 49 chain 3996 chr16 90338345 + 11231860 11231941 MER20 218 + 49 127 91476 17 25 22 39 chain 11912 chr16 90338345 + 11266548 11266702 L1PA8 5853 + 5701 5853 66977 38 3 2 19 1 0 93 chain 3891 chr16 90338345 + 11306340 11306390 L1MB3 1562 + 1129 1226 92206 40 0 47 10 chain 12920 chr16 90338345 + 11318209 11318352 L1PA5 6144 + 5998 6141 65223 143 chain 36769 chr16 90338345 + 11418223 11418686 MER41A 554 + 0 554 36909 86 6 7 106 0 1 192 0 89 73 chain 126531 chr16 90338345 + 11419197 11420596 L1PA3long 6157 + 4743 6152 14476 288 1 0 257 0 4 12 0 4 832 0 3 9 chain 2888 chr16 90338345 + 11429024 11429057 L1MC4 1079 + 285 318 100942 33 chain 11446 chr16 90338345 + 11475173 11475328 L1PA8 5853 + 5700 5853 67838 44 6 5 11 2 1 92 chain 24008 chr16 90338345 + 11579203 11579459 AluYb8 318 + 34 290 50781 256 chain 9671 chr16 90338345 + 11580021 11580194 Tigger4a 237 + 43 215 71116 60 7 0 12 1 0 5 15 23 14 1 2 21 2 0 35 chain 4981 chr16 90338345 + 11606469 11606541 Tigger1 2417 + 586 669 85747 27 3 14 42 chain 40303 chr16 90338345 + 11633336 11633886 MER41A 554 + 0 554 34446 87 5 6 48 11 12 244 4 0 33 0 1 38 7 12 73 chain 6262 chr16 90338345 + 11706848 11707023 MER8 282 + 0 220 80117 62 17 61 13 57 58 26 chain 27980 chr16 90338345 + 11948486 11948795 AluYa5 310 + 2 310 44901 130 1 0 178 chain 103457 chr16 90338345 + 12102615 12103837 L1PA7 6471 + 4363 5605 17889 303 0 8 281 1 0 195 9 21 24 1 2 408 chain 3238 chr16 90338345 + 12143843 12143912 MER5B 177 + 31 101 97589 21 21 22 27 chain 5071 chr16 90338345 + 12176556 12176616 MER2 342 + 152 212 85298 60 chain 37729 chr16 90338345 + 12183630 12184153 MER41A 554 + 0 534 36257 63 0 1 182 14 10 67 7 17 4 1 0 122 0 5 63 chain 37286 chr16 90338345 + 12352099 12352515 L1PA4 6152 + 5724 6140 36557 416 chain 397328 chr16 90338345 + 12591774 12596989 L1PA4 6152 + 10 5347 5190 62 3 5 229 11 22 44 7 6 196 1 4 196 0 2 25 1 0 144 0 10 37 0 3 45 0 1 35 5 8 59 0 2 57 8 7 4 0 1 18 0 2 8 15 14 141 35 37 9 0 1 8 12 6 23 0 2 332 0 2 27 1 6 250 0 3 249 0 2 74 0 3 70 28 34 8 0 2 48 0 4 84 4 6 74 0 17 5 0 2 164 0 2 131 4 1 27 0 3 47 0 2 21 0 2 64 0 2 8 0 7 78 7 9 8 9 0 317 3 8 13 1 0 193 0 3 45 8 10 312 0 3 85 0 6 41 0 2 62 2 0 26 1 3 47 0 4 480 1 0 257 0 4 16 0 4 45 chain 361777 chr16 90338345 + 12603812 12608687 L1PA4 6152 + 0 5030 5784 71 6 4 43 46 60 426 2 0 68 8 15 86 0 2 21 0 4 148 0 3 35 0 9 25 1 0 34 6 7 23 3 1 58 0 2 16 0 3 8 0 4 79 0 4 99 5 4 43 2 18 17 6 5 290 0 2 62 0 2 48 0 5 59 0 5 187 1 0 26 0 3 9 0 2 32 0 1 82 1 0 309 1 8 6 0 2 104 0 5 69 4 6 32 1 5 19 0 3 88 1 0 4 0 1 31 0 2 112 1 5 52 3 7 26 0 2 13 0 6 6 28 5 21 5 1 10 13 16 12 0 14 24 1 0 151 0 3 48 1 5 185 0 4 96 0 1 67 3 6 22 2 6 52 3 2 4 0 1 22 0 3 151 0 2 188 1 0 46 0 8 127 0 2 148 1 4 59 0 1 90 0 2 32 22 22 30 0 4 101 0 4 45 chain 29820 chr16 90338345 + 12611147 12611598 MER41A 554 + 0 469 42218 63 6 7 17 14 16 18 21 32 201 1 4 72 0 1 38 chain 3031 chr16 90338345 + 12695217 12695256 MER57B2 428 + 0 39 99489 39 chain 6070 chr16 90338345 + 12715892 12715968 MER30B 195 + 119 195 80835 76 chain 3395 chr16 90338345 + 12732734 12732817 HAL1 992 + 426 500 96116 23 17 16 25 8 0 10 chain 9842 chr16 90338345 + 12751273 12751398 Tigger1 2417 + 591 717 70736 6 0 1 119 chain 5637 chr16 90338345 + 12776946 12777063 THE1B 368 + 249 368 82615 41 41 43 35 chain 23650 chr16 90338345 + 12792569 12792917 THE1B 368 + 0 353 51359 169 1 0 29 0 3 13 0 4 6 22 20 36 7 8 65 chain 23405 chr16 90338345 + 12807472 12808605 MER4A1_ 611 + 0 595 51749 91 789 252 158 0 1 20 20 18 55 chain 15540 chr16 90338345 + 12813279 12813504 MER4A 717 + 22 328 61602 97 0 1 8 3 2 44 0 83 12 8 6 53 chain 3513 chr16 90338345 + 12913151 12913191 MADE1 96 + 1 41 95144 40 chain 48817 chr16 90338345 + 12967013 12967570 L1PA4 6152 + 5596 6152 30006 45 5 4 507 chain 4998 chr16 90338345 + 13073452 13073529 MER5A 189 + 14 90 85673 24 6 0 40 0 5 7 chain 4327 chr16 90338345 + 13201151 13201202 MER58A 224 + 45 96 89310 51 chain 24105 chr16 90338345 + 13273307 13273646 THE1B 368 + 0 350 50639 41 8 23 105 12 11 124 2 0 41 1 0 5 chain 2821 chr16 90338345 + 13323424 13323460 MSTB 430 + 2 37 101513 23 1 0 12 chain 23616 chr16 90338345 + 13325696 13326066 L1PA8 5853 + 5489 5853 51402 30 1 2 35 7 6 46 3 1 21 4 5 44 1 0 11 0 3 5 9 4 38 2 1 19 1 0 93 chain 21627 chr16 90338345 + 13337160 13337521 THE1B 368 + 0 366 54317 106 10 11 52 1 0 6 62 68 89 1 0 34 chain 21383 chr16 90338345 + 13337657 13338027 MSTA 426 + 2 416 54655 98 22 47 59 4 0 10 2 0 5 1 8 7 3 0 20 11 12 25 4 24 99 chain 9282 chr16 90338345 + 13385775 13385951 L1MD2 1676 + 1312 1492 71947 11 1 0 103 47 52 14 chain 111287 chr16 90338345 + 13512256 13513680 L1PA8 5853 + 4092 5538 16907 130 11 15 133 10 6 551 1 0 4 0 2 69 12 10 6 0 1 120 0 20 161 0 1 32 6 7 178 chain 6032 chr16 90338345 + 13556818 13557019 MER2 342 + 135 342 80951 13 11 12 55 80 84 21 5 6 16 chain 33159 chr16 90338345 + 13565712 13566078 L1PA4 6152 + 5785 6151 39397 366 chain 7554 chr16 90338345 + 13609557 13609715 MER39B 650 + 489 643 75984 50 41 36 14 5 6 48 chain 38998 chr16 90338345 + 13610040 13610697 MER4A 717 + 4 717 35359 16 6 5 7 0 1 12 0 1 7 15 17 45 6 7 5 1 0 127 0 7 7 0 5 87 1 47 86 53 47 103 10 11 50 0 1 4 1 0 8 chain 9289 chr16 90338345 + 13626608 13626846 L1MB1 2102 + 1754 2003 71930 76 111 122 51 chain 48399 chr16 90338345 + 13633626 13634291 PABL_B 668 + 0 668 30149 42 10 13 368 12 18 43 0 2 98 2 0 29 12 8 27 2 0 20 chain 4177 chr16 90338345 + 13641160 13641216 MER20 218 + 89 138 90280 37 7 0 12 chain 15061 chr16 90338345 + 13676366 13676722 L1PA13 3608 + 126 454 62190 12 3 0 25 5 16 11 8 0 11 15 0 81 0 1 8 2 0 20 27 29 10 0 1 43 6 7 8 12 0 7 1 0 12 1 0 17 2 0 9 chain 6874 chr16 90338345 + 13716686 13716789 MER65A 464 + 364 464 78057 14 9 5 36 0 1 44 chain 45749 chr16 90338345 + 13725607 13726218 MER41B 635 + 0 611 31189 125 1 2 329 17 16 139 chain 75827 chr16 90338345 + 13739842 13740791 LTR13 1007 + 0 956 22631 71 2 0 310 4 5 299 4 10 46 1 2 72 0 1 140 chain 5989 chr16 90338345 + 13740850 13740920 MER4A1 472 + 402 472 81128 70 chain 14312 chr16 90338345 + 13772091 13772317 Tigger3a 397 + 139 378 63176 21 5 15 158 18 21 24 chain 23989 chr16 90338345 + 13797081 13797445 L1PA16 3655 + 3226 3583 50807 65 30 28 97 9 7 155 3 0 5 chain 12171 chr16 90338345 + 13841796 13841925 L1PA2 6032 + 5693 5822 66526 129 chain 61491 chr16 90338345 + 13874766 13875519 MER4E1 777 + 0 769 25987 23 8 9 40 0 1 347 0 1 60 0 4 57 1 9 130 0 1 87 chain 88164 chr16 90338345 + 13889100 13890211 SVA_B 1603 + 44 1601 20014 22 0 5 130 0 1 252 0 39 20 0 477 74 76 0 110 0 2 419 2 0 6 chain 86089 chr16 90338345 + 13904706 13905708 LTR13 1007 + 0 1007 20418 171 10 15 160 1 0 636 1 2 23 chain 14927 chr16 90338345 + 13991211 13991504 L1PB1 5432 + 5162 5430 62357 5 0 2 51 2 1 11 5 4 41 4 3 16 3 0 15 9 0 15 13 8 12 2 0 24 1 0 23 1 0 13 1 0 16 1 0 4 1 0 4 chain 28927 chr16 90338345 + 14159647 14159955 AluYa5 310 + 0 307 43439 132 1 0 175 chain 14079 chr16 90338345 + 14222341 14222538 MER30 238 + 30 238 63487 68 12 0 12 1 24 104 chain 22658 chr16 90338345 + 14224902 14225173 AluSp 311 + 0 269 52889 37 2 0 232 chain 115671 chr16 90338345 + 14230033 14231293 L1PA3long 6157 + 4897 6157 16294 1260 chain 6875 chr16 90338345 + 14285892 14285964 tRNA-Thr-ACG 72 + 0 72 78055 72 chain 25781 chr16 90338345 + 14416988 14417340 THE1A 353 + 0 353 48051 109 2 1 92 1 0 7 9 12 132 chain 2976 chr16 90338345 + 14517154 14517192 MLT1H 522 + 56 94 100088 38 chain 3886 chr16 90338345 + 14561310 14561386 MER5A 189 + 36 113 92245 38 20 21 18 chain 110328 chr16 90338345 + 14573935 14575783 THE1B-int 1605 + 0 1605 17031 13 33 31 238 10 12 136 2 27 61 304 1 21 0 1 39 0 13 112 1 33 437 8 7 147 30 3 7 0 14 108 2 0 57 0 5 82 chain 92865 chr16 90338345 + 14673702 14675658 L1PB3 3668 + 1666 3031 19202 106 13 10 134 3 7 92 1 16 85 20 1 263 305 33 14 3 4 4 0 1 104 342 37 90 1 0 21 12 0 141 0 1 158 0 2 15 10 7 19 chain 3665 chr16 90338345 + 14785551 14785633 MER20 218 + 54 134 93864 21 28 26 33 chain 36614 chr16 90338345 + 15167159 15167604 L1PA7 6471 + 6025 6468 37009 37 0 1 396 3 0 9 chain 53133 chr16 90338345 + 15249767 15250577 L1PB1 5432 + 4655 5423 28521 266 0 4 178 1 2 9 22 5 17 1 0 10 1 0 12 5 1 9 2 0 52 2 1 14 2 1 45 1 0 15 1 0 4 2 0 11 8 0 16 2 0 5 1 0 14 6 4 20 1 0 21 6 5 8 1 0 19 chain 43183 chr16 90338345 + 15331568 15332114 MLT2A2 560 + 0 560 32662 194 10 13 201 0 11 141 chain 43744 chr16 90338345 + 15388864 15389715 MER41A 554 + 13 553 32292 52 0 1 367 312 0 120 chain 112808 chr16 90338345 + 15392038 15393289 L1PA5 6144 + 4622 5872 16703 755 1 0 495 chain 27669 chr16 90338345 + 15409308 15409717 LTR7B 505 + 7 495 45370 31 1 2 49 0 3 16 0 10 57 0 38 12 3 28 25 0 2 38 0 1 40 1 0 29 0 1 52 14 13 41 chain 2950 chr16 90338345 + 15500612 15500649 MER33 330 + 43 80 100363 37 chain 2921 chr16 90338345 + 15525751 15525799 MLT2B4 540 + 479 538 100667 12 6 17 30 chain 8112 chr16 90338345 + 15530183 15530306 MER85 139 + 5 139 74612 66 8 9 14 0 10 35 chain 5305 chr16 90338345 + 15633301 15633359 MER107 203 + 0 58 84174 58 chain 59332 chr16 90338345 + 15655491 15656138 L1PA3long 6157 + 5509 6156 26555 647 chain 3242 chr16 90338345 + 15715538 15715579 L1MB8 1703 + 1545 1586 97556 41 chain 3352 chr16 90338345 + 15775282 15775320 MER58A 224 + 42 80 96580 38 chain 27840 chr16 90338345 + 15821646 15821938 AluYb8 318 + 10 302 45123 292 chain 16153 chr16 90338345 + 15845187 15845418 MER30 238 + 0 238 60807 106 5 15 77 8 5 35 chain 3297 chr16 90338345 + 15914842 15914879 L1PB3 3668 + 3529 3566 97037 37 chain 76945 chr16 90338345 + 15917866 15918854 L1PA6 6164 + 5190 6161 22332 390 20 10 160 0 1 177 0 1 79 2 0 7 1 4 108 19 9 25 chain 4381 chr16 90338345 + 15939709 15939782 MER20 218 + 6 79 88993 12 5 6 7 1 0 48 chain 4348 chr16 90338345 + 16020463 16020509 MER58A 224 + 37 83 89193 46 chain 22524 chr16 90338345 + 16048717 16048998 AluSp 311 + 13 296 53085 78 0 3 183 5 4 15 chain 19769 chr16 90338345 + 16161867 16162220 THE1D 372 + 4 372 56713 124 0 4 19 85 95 43 0 2 16 2 0 4 0 1 60 chain 38000 chr16 90338345 + 16192971 16193429 MER41A 554 + 2 461 36074 250 0 1 208 chain 25303 chr16 90338345 + 16479482 16479819 THE1B 368 + 25 368 48778 15 0 5 123 2 0 28 1 3 103 1 2 64 chain 24498 chr16 90338345 + 16503502 16503851 THE1B 368 + 0 368 50025 44 6 21 73 0 4 27 5 4 91 0 1 42 12 12 49 chain 13189 chr16 90338345 + 16516423 16516636 L1PA8 5853 + 5638 5847 64799 40 16 14 45 7 6 17 1 0 87 chain 65012 chr16 90338345 + 16576201 16576924 L1PA4 6152 + 4472 5195 25187 723 chain 44444 chr16 90338345 + 16612065 16612619 MLT2A2 560 + 0 560 31862 66 0 2 115 1 0 81 0 3 16 0 1 35 0 1 240 chain 19908 chr16 90338345 + 16625585 16625868 AluSp 311 + 22 306 56516 101 38 39 144 chain 18886 chr16 90338345 + 16633993 16634357 THE1B 368 + 0 368 57655 166 125 129 73 chain 23625 chr16 90338345 + 16663462 16663846 THE1D 372 + 0 372 51391 28 5 0 28 13 4 14 4 5 87 32 34 27 1 0 145 chain 44103 chr16 90338345 + 16689026 16689537 L1PA6 6164 + 2547 3059 32082 260 0 1 251 chain 3375 chr16 90338345 + 16698349 16698388 MLT1C 463 + 49 88 96347 39 chain 16714 chr16 90338345 + 16738601 16738922 THE1C 375 + 14 336 60137 30 3 4 5 1 0 34 47 52 45 1 2 41 22 17 92 chain 6386 chr16 90338345 + 16801087 16801193 MER20 218 + 44 151 79722 36 15 16 55 chain 20124 chr16 90338345 + 16878852 16879079 L1PA3long 6157 + 5916 6149 56229 85 0 7 107 1 0 34 chain 5300 chr16 90338345 + 17110816 17110877 MER85 139 + 58 119 84197 61 chain 21900 chr16 90338345 + 17443291 17443654 THE1D 372 + 0 372 53968 55 0 2 103 70 78 99 5 4 31 chain 10348 chr16 90338345 + 17484531 17484651 MER50 708 + 569 689 69705 120 chain 9430 chr16 90338345 + 17490482 17490664 L1PB1 5432 + 5161 5326 71636 7 2 0 46 6 5 17 1 0 46 1 0 14 24 12 18 chain 8971 chr16 90338345 + 17496718 17496824 L1PA6 6164 + 6056 6162 72626 106 chain 38505 chr16 90338345 + 17599603 17600042 L1PA7 6471 + 6027 6466 35704 439 chain 40719 chr16 90338345 + 17611868 17612421 MER41A 554 + 0 554 34136 250 0 1 150 6 8 54 19 18 49 5 4 20 chain 11355 chr16 90338345 + 17613063 17613197 MER41A 554 + 11 146 68001 81 0 1 53 chain 49892 chr16 90338345 + 17717725 17718356 L1PA8 5853 + 5234 5853 29605 107 1 0 99 2 0 124 1 0 45 2 0 70 1 0 8 3 0 53 2 1 22 1 0 90 chain 17901 chr16 90338345 + 17726614 17726912 L1PB2 3958 + 3541 3836 58757 76 11 10 54 6 5 42 1 4 23 12 10 10 1 0 13 1 0 48 chain 542736 chr16 90338345 + 17733165 17739300 L1PA5 6144 + 3 6139 1159 539 0 3 578 13 7 55 0 1 841 1 0 202 0 1 1019 0 3 1251 0 1 213 0 1 642 1 2 418 4 0 110 0 1 248 chain 3930 chr16 90338345 + 17755380 17755425 MLT1I 406 + 361 406 91907 45 chain 66898 chr16 90338345 + 17766289 17767059 L1PA7 6471 + 5697 6467 24721 770 chain 9576 chr16 90338345 + 17822738 17822872 MER85 139 + 5 139 71314 91 8 9 5 1 0 29 chain 14154 chr16 90338345 + 17886511 17886731 MER39B 650 + 3 254 63374 14 1 0 18 0 12 12 7 5 89 3 2 57 0 23 19 chain 537451 chr16 90338345 + 17906425 17912554 L1PA5 6144 + 3 6135 1484 417 0 5 608 1 0 90 13 7 55 0 1 514 0 1 41 0 1 201 0 1 20 0 6 341 0 1 2405 0 1 596 0 1 103 0 1 343 9 0 226 17 17 129 chain 9829 chr16 90338345 + 17918200 17918335 MLT1B 390 + 243 375 70761 103 4 1 28 chain 27031 chr16 90338345 + 17933376 17933748 THE1B 368 + 0 368 46222 15 2 0 25 0 5 92 16 8 27 3 2 126 0 2 66 chain 37540 chr16 90338345 + 17950775 17951328 L1PA8 5853 + 5323 5853 36379 241 1 0 44 2 0 67 18 16 49 2 1 10 2 0 3 1 0 6 4 3 28 19 6 56 chain 41962 chr16 90338345 + 17960834 17961370 MER41A 554 + 11 554 33378 188 0 1 13 4 5 41 0 1 145 0 4 145 chain 14269 chr16 90338345 + 18002031 18002349 L1PB1 5432 + 5115 5404 63236 23 2 1 8 1 0 11 5 1 9 2 0 52 2 1 15 1 0 44 1 0 16 71 55 19 1 0 21 1 0 13 chain 11683 chr16 90338345 + 18016728 18016918 L1PB4 2604 + 2370 2546 67422 16 2 0 96 11 0 18 5 4 42 chain 8626 chr16 90338345 + 18035195 18035321 AluSc 308 + 1 131 73397 30 18 22 78 chain 116842 chr16 90338345 + 18065051 18066852 L1MA1 4479 + 2352 4155 16080 80 5 6 41 0 3 11 0 72 102 2 1 103 2 0 33 1 0 16 0 1 27 0 1 7 1 0 10 1 0 91 1 0 28 2 0 156 17 15 19 8 0 76 19 12 42 10 6 78 3 0 129 6 4 62 1 0 4 35 8 118 1 0 5 0 2 18 29 26 61 1 0 19 2 0 14 1 0 88 1 0 5 3 0 115 0 1 10 1 0 9 0 1 19 2 0 35 1 0 9 1 0 4 chain 36939 chr16 90338345 + 18078893 18079339 L1PA7 6471 + 6024 6468 36784 38 0 1 396 3 0 9 chain 23254 chr16 90338345 + 18145660 18145929 AluSp 311 + 11 280 51995 269 chain 53050 chr16 90338345 + 18205237 18206047 L1PB1 5432 + 4655 5423 28557 266 0 4 178 1 2 9 22 5 17 1 0 10 1 0 12 5 1 9 2 0 52 2 1 14 2 1 45 1 0 15 1 0 4 2 0 11 8 0 16 2 0 5 1 0 14 6 4 20 1 0 21 6 5 8 1 0 19 chain 14387 chr16 90338345 + 18272342 18272718 MLT1B 390 + 31 385 63051 24 1 0 57 174 153 120 chain 44333 chr16 90338345 + 18286929 18287475 MLT2A2 560 + 0 560 31929 194 10 13 201 0 11 141 chain 26070 chr16 90338345 + 18577993 18578453 L1MA3 4352 + 3739 4206 47624 200 7 25 97 86 76 42 1 0 27 chain 4303 chr16 90338345 + 18605009 18605165 MER30 238 + 175 238 89481 14 94 1 48 chain 557538 chr16 90338345 + 18608050 18614190 L1PA3long 6157 + 6 6157 270 1069 0 1 912 0 4 254 0 1 312 0 1 2145 0 3 829 0 1 619 chain 2966 chr16 90338345 + 18648416 18648451 L1MC5 759 + 401 436 100221 35 chain 36372 chr16 90338345 + 18650244 18650704 L1PA8 5853 + 5400 5853 37159 164 1 0 46 2 0 69 1 0 8 2 1 52 2 1 19 1 0 93 chain 267939 chr16 90338345 + 18670172 18673264 L1PA6 6164 + 3063 6162 7764 124 1 0 516 1 0 660 1 5 368 0 1 9 0 5 412 0 5 599 5 6 383 7 0 6 chain 10911 chr16 90338345 + 18704346 18704659 L1MB8 1703 + 1236 1564 68679 73 50 0 10 62 132 49 27 22 42 chain 132413 chr16 90338345 + 18733728 18735267 SVA_B 1603 + 0 1603 13789 9 23 0 10 14 25 778 0 40 62 0 38 28 1 0 383 1 0 230 chain 66070 chr16 90338345 + 18777778 18778516 L1PA4 6152 + 5401 6141 24945 593 0 1 43 0 1 102 chain 14930 chr16 90338345 + 18787239 18787423 MER107 203 + 0 203 62353 152 1 20 31 chain 13543 chr16 90338345 + 18798288 18798453 L1PA7 6471 + 6308 6469 64264 93 4 0 68 chain 3712 chr16 90338345 + 18875233 18875276 Tigger4a 237 - 189 232 93526 43 chain 6195 chr16 90338345 + 18935878 18935960 MLT2B4 540 + 7 88 80373 9 1 0 72 chain 17215 chr16 90338345 + 18943517 18943879 THE1B 368 + 0 368 59561 82 2 0 26 89 85 8 0 1 12 16 28 64 7 6 56 chain 24644 chr16 90338345 + 18948957 18949256 AluSp 311 + 0 294 49806 64 5 0 230 chain 4963 chr16 90338345 + 18956927 18956989 Tigger2 2703 + 2586 2648 85835 62 chain 6402 chr16 90338345 + 18975889 18975983 MER21C 908 + 17 197 79666 72 1 87 21 chain 65639 chr16 90338345 + 19003339 19004052 SVA_F 1814 + 1055 1814 25047 34 0 49 39 1 0 10 1 0 617 1 0 10 chain 5194 chr16 90338345 + 19012156 19012217 U6 107 + 0 61 84707 61 chain 23955 chr16 90338345 + 19034933 19035254 L1PA16 3655 + 3250 3569 50857 40 18 16 263 chain 21571 chr16 90338345 + 19091591 19091932 THE1C 375 + 7 375 54408 46 5 32 94 0 3 18 22 16 120 10 13 26 chain 4269 chr16 90338345 + 19137504 19137624 MER20 218 + 38 161 89706 4 1 0 30 12 13 5 2 0 28 25 30 13 chain 15949 chr16 90338345 + 19137930 19138151 MER30 238 + 0 238 61093 101 15 32 105 chain 22198 chr16 90338345 + 19149425 19149794 THE1D 372 + 0 355 53558 75 19 0 87 49 55 67 2 1 70 chain 6730 chr16 90338345 + 19253101 19253271 MER58A 224 + 45 214 78540 40 65 66 10 2 0 53 chain 21608 chr16 90338345 + 19297965 19298259 AluSp 311 + 0 298 54344 21 4 1 120 3 11 116 2 1 28 chain 7724 chr16 90338345 + 19310027 19310139 L1MB5 1630 + 1011 1126 75551 48 0 2 38 7 8 19 chain 3877 chr16 90338345 + 19321672 19321722 MLT2D 439 + 97 148 92307 40 0 1 10 chain 22854 chr16 90338345 + 19331840 19332207 MER41B 635 + 131 549 52571 53 5 15 46 38 76 136 20 23 69 chain 3571 chr16 90338345 + 19337957 19338030 MER91B 187 + 70 139 94653 14 18 13 8 0 1 33 chain 21650 chr16 90338345 + 19386236 19386602 MSTA 426 + 10 405 54291 93 0 1 5 0 4 9 30 37 46 4 0 8 22 23 60 1 21 88 chain 27907 chr16 90338345 + 19390158 19390565 LOR1b 457 + 67 457 45022 55 9 10 16 26 1 86 0 7 215 chain 18479 chr16 90338345 + 19421263 19421548 THE1B 368 + 0 306 58123 8 0 6 117 10 21 17 1 0 21 7 10 14 0 4 12 1 0 12 1 0 64 chain 8131 chr16 90338345 + 19519482 19519619 Tigger1 2417 + 2273 2404 74562 68 5 7 25 12 4 27 chain 86908 chr16 90338345 + 19543134 19544237 MER11A 1151 + 0 1147 20246 108 0 2 66 8 0 23 2 0 31 0 4 60 0 2 118 0 3 265 2 5 55 0 4 73 6 40 108 1 2 57 0 1 4 1 0 109 0 1 6 chain 4556 chr16 90338345 + 19603323 19603537 MER33 330 + 41 264 88036 39 77 75 23 32 40 15 14 17 14 chain 4916 chr16 90338345 + 19717143 19717247 MER44A 345 + 196 307 86077 20 24 30 9 2 3 49 chain 3570 chr16 90338345 + 19764647 19764687 MER41A 554 + 400 440 94663 40 chain 38709 chr16 90338345 + 19785401 19785957 MER51A 677 + 0 661 35558 170 0 63 55 10 0 4 0 72 60 12 8 128 8 0 23 8 0 78 chain 29466 chr16 90338345 + 19787846 19788294 LOR1b 457 + 0 440 42649 25 24 22 46 1 7 42 7 1 188 0 2 9 2 0 20 6 0 78 chain 3364 chr16 90338345 + 19829773 19829853 MADE1 96 - 0 96 96435 24 18 34 38 chain 3029 chr16 90338345 + 19903607 19903639 MLT1D 503 + 77 109 99508 32 chain 14331 chr16 90338345 + 19955144 19955330 MER4A1 472 + 0 177 63148 18 9 0 159 chain 94475 chr16 90338345 + 19955330 19956424 L1PA7 6471 + 5376 6470 18968 245 1 0 88 0 1 760 chain 10256 chr16 90338345 + 19997462 19997647 MER58A 224 + 41 214 69889 78 46 34 61 chain 5739 chr16 90338345 + 20007068 20007224 MER58A 224 + 0 154 82185 17 18 0 10 1 19 37 25 24 23 7 6 18 chain 23568 chr16 90338345 + 20013643 20013968 THE1C 375 + 1 331 51479 65 3 4 65 0 4 47 9 9 136 chain 83527 chr16 90338345 + 20017920 20018872 L1PA6 6164 + 5199 6154 20909 117 0 3 835 chain 25030 chr16 90338345 + 20024097 20024461 THE1B 368 + 0 368 49230 15 2 0 22 0 5 101 11 16 13 11 10 109 3 0 77 chain 7079 chr16 90338345 + 20027929 20028032 L1MA7 2200 + 1876 1977 77332 71 6 4 26 chain 2600 chr16 90338345 + 20033836 20033892 MADE1 96 - 0 96 102995 33 0 40 23 chain 18337 chr16 90338345 + 20113191 20113596 L1PB1 5432 + 5064 5422 58317 39 1 2 9 7 0 21 1 0 9 1 0 12 2 0 3 2 0 9 2 0 52 18 16 45 1 0 14 62 38 13 2 0 24 1 0 21 1 0 13 1 0 14 1 0 4 chain 44258 chr16 90338345 + 20173357 20173903 MER41A 554 + 0 554 31976 288 1 9 257 chain 74122 chr16 90338345 + 20185564 20186361 L1PA2 6032 + 4939 5736 23061 797 chain 60628 chr16 90338345 + 20283827 20284927 L1MA2 4263 + 3252 4220 26194 152 2 0 23 12 13 15 0 4 25 4 6 76 1 0 18 16 11 59 9 8 140 10 7 147 11 9 93 7 0 47 1 0 9 182 67 23 4 2 14 chain 12859 chr16 90338345 + 20296661 20296872 MER30 238 + 0 235 65332 17 21 30 60 14 29 99 chain 43187 chr16 90338345 + 20370593 20371141 MER41A 554 + 0 554 32658 381 0 1 87 9 14 71 chain 22716 chr16 90338345 + 20409016 20409301 AluY 311 + 25 297 52808 98 1 0 9 0 1 153 13 0 11 chain 12571 chr16 90338345 + 20449084 20449248 MSTB1-int 1597 + 15 180 65851 63 3 4 98 chain 28577 chr16 90338345 + 20452112 20452521 MLT2A1 477 + 0 408 43988 25 0 1 118 24 27 10 0 1 21 0 1 178 2 3 11 8 0 12 chain 64793 chr16 90338345 + 20452661 20454551 HERVL-int 5654 + 0 812 25238 522 23 8 23 1062 0 121 6 5 133 chain 24207 chr16 90338345 + 20462949 20463241 L1PA4 6152 + 5859 6151 50488 39 1 0 80 1 2 171 chain 6319 chr16 90338345 + 20481166 20481247 L1MA4A 3247 + 3024 3107 79940 19 1 3 61 chain 28593 chr16 90338345 + 20534864 20535178 L1PA3long 6157 + 5841 6155 43970 314 chain 4258 chr16 90338345 + 20561070 20561125 L1MB3 1562 + 1227 1280 89769 8 1 0 16 1 0 29 chain 43277 chr16 90338345 + 20597487 20598189 L1PB1 5432 + 4763 5430 32593 228 0 3 109 1 2 11 15 8 10 1 0 12 1 0 11 5 1 11 2 0 51 2 1 9 7 6 44 1 0 16 1 0 4 18 8 14 7 5 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 2 0 10 chain 24369 chr16 90338345 + 20631292 20631652 L1PB2 3958 + 3474 3838 50215 52 16 14 35 0 8 35 1 0 63 1 0 72 2 0 13 0 3 5 2 1 63 chain 4323 chr16 90338345 + 20641198 20641248 LTR49 580 + 11 61 89331 50 chain 42799 chr16 90338345 + 20641978 20642571 HERVK14-int 1672 + 5 590 32889 25 1 0 11 1 0 47 1 0 30 6 5 177 6 5 34 2 0 227 2 1 23 chain 142400 chr16 90338345 + 20645089 20646856 HERV17-int 4347 + 13 3881 12899 13 2 1 51 2 1 33 2 0 27 1 0 196 4 434 583 0 2 120 11 6 54 0 1 4 1 0 242 4 11 268 0 1672 149 chain 4741 chr16 90338345 + 20648181 20648241 LTR49 580 + 195 254 87002 29 1 0 30 chain 57885 chr16 90338345 + 20649200 20649945 MER4E 760 + 24 760 27005 142 7 0 195 8 0 82 2 1 5 0 5 297 0 2 7 chain 235622 chr16 90338345 + 20652551 20655226 L1PA5 6144 + 3279 5962 8582 1679 0 5 520 0 3 476 chain 52885 chr16 90338345 + 20659399 20660140 MER4E 760 + 0 743 28609 22 3 2 100 1 0 42 1 0 5 0 9 8 23 8 132 1 0 32 1 4 82 4 8 25 13 18 246 chain 38406 chr16 90338345 + 20662968 20663540 LTR14B 630 + 9 630 35782 162 0 42 51 1 12 19 0 25 69 4 13 11 42 12 11 8 0 194 chain 37471 chr16 90338345 + 20674103 20674597 LTR15 485 + 0 483 36422 122 5 1 27 0 2 129 0 4 58 11 0 7 0 1 67 4 0 20 3 1 36 0 3 5 chain 37623 chr16 90338345 + 20681722 20682199 LTR15 485 + 0 475 36324 125 4 0 24 0 2 128 1 5 59 3 1 98 2 0 33 chain 50363 chr16 90338345 + 20693841 20694430 LTR10C 591 + 0 591 29428 508 0 2 81 chain 42372 chr16 90338345 + 20716265 20716874 LTR14B 630 + 7 630 33147 154 1 0 101 0 11 21 0 25 72 0 9 13 51 21 196 chain 91967 chr16 90338345 + 20724195 20725222 L1PA4 6152 + 3803 4830 19345 134 0 1 470 8 7 415 chain 17077 chr16 90338345 + 20742113 20742375 LTR66 600 + 0 280 59726 48 0 4 10 0 3 34 4 0 17 25 37 15 0 3 109 chain 7748 chr16 90338345 + 20744236 20744383 MER57B2 428 + 50 199 75494 62 6 7 40 26 27 13 chain 15811 chr16 90338345 + 20761236 20761427 MER4D0 881 + 690 881 61273 191 chain 48956 chr16 90338345 + 20805458 20806036 LTR10C 591 + 10 591 29965 69 0 1 428 0 2 81 chain 6517 chr16 90338345 + 20832761 20832923 MER3 215 + 5 205 79281 49 41 63 37 16 32 19 chain 28440 chr16 90338345 + 20863755 20864172 L1PA14 3548 + 3050 3444 44209 64 4 0 17 2 0 6 1 0 79 6 5 111 1 0 9 6 2 34 4 2 14 1 0 5 1 0 7 5 0 9 1 0 30 chain 27814 chr16 90338345 + 20875571 20875936 L1MA4 2864 + 1646 2010 45163 23 1 0 4 0 2 8 3 1 326 chain 19945 chr16 90338345 + 20932555 20932799 L1PA5 6144 + 5904 6144 56463 89 7 3 148 chain 18145 chr16 90338345 + 20961291 20961505 L1PA5 6144 + 5930 6144 58513 214 chain 25567 chr16 90338345 + 21058651 21059003 L1PA8 5853 + 5507 5853 48372 4 0 1 52 1 0 44 2 0 70 2 1 8 5 4 49 2 1 14 6 5 93 chain 15623 chr16 90338345 + 21103031 21103308 L1PB1 5432 + 5171 5427 61503 49 2 1 15 1 0 45 1 0 15 24 12 19 2 0 4 1 0 15 2 0 24 1 0 12 0 5 4 1 0 13 1 0 14 1 0 4 2 0 5 chain 33816 chr16 90338345 + 21112756 21113148 THE1A-int 1579 + 1181 1574 38837 133 0 1 259 chain 15281 chr16 90338345 + 21113153 21113360 THE1A 353 + 0 207 61940 24 0 1 78 11 10 94 chain 73724 chr16 90338345 + 21114556 21115399 L1PA5 6144 + 5296 6144 23160 53 0 3 266 3 2 508 2 5 11 chain 116991 chr16 90338345 + 21152414 21153813 LTR12C 1709 + 0 1692 16058 699 0 159 254 1 0 4 4 2 106 0 4 76 3 4 33 0 29 11 7 110 201 chain 11336 chr16 90338345 + 21183535 21183674 L1PA15 4387 + 3955 4094 68026 139 chain 21927 chr16 90338345 + 21188988 21189256 AluY 311 + 51 307 53931 75 5 0 140 7 0 41 chain 20707 chr16 90338345 + 21218098 21218469 MER61F 604 + 3 492 55490 22 11 91 17 2 0 8 1 29 61 0 9 53 0 1 4 1 0 7 6 7 30 14 13 27 0 2 20 0 2 6 2 0 40 3 4 36 chain 4103 chr16 90338345 + 21224267 21224320 MLT2F 649 + 594 648 90754 38 0 1 15 chain 25708 chr16 90338345 + 21244084 21244424 L1PA8 5853 + 5515 5848 48154 49 1 0 44 2 0 74 1 0 5 2 1 52 2 1 19 2 1 87 chain 6984 chr16 90338345 + 21256083 21256176 MER47B 469 + 287 377 77658 5 3 0 85 chain 53441 chr16 90338345 + 21289849 21290569 LTR12 884 + 11 884 28414 42 0 41 114 0 108 24 1 2 35 3 1 82 2 5 176 8 9 122 0 1 111 chain 85326 chr16 90338345 + 21327901 21328938 MER11C 1089 + 5 1063 20562 74 0 1 42 1 0 98 0 5 24 0 1 63 0 4 217 0 4 53 1 2 92 3 7 45 0 1 151 0 1 173 chain 21230 chr16 90338345 + 21433278 21433597 MER83B 357 + 0 324 54847 60 29 14 13 0 3 41 0 9 94 1 9 81 chain 19926 chr16 90338345 + 21433624 21433927 THE1B 368 + 1 306 56485 168 1 0 28 37 0 9 0 40 60 chain 41808 chr16 90338345 + 21434408 21435255 MER41A 554 + 13 553 33483 52 0 1 361 314 6 120 chain 130338 chr16 90338345 + 21437473 21438980 L1PA5 6144 + 4622 6132 13997 672 3 5 680 10 11 142 chain 28805 chr16 90338345 + 21439603 21440688 LTR7B 505 + 0 503 43618 38 1 2 50 0 3 12 0 10 60 0 38 12 34 27 28 0 2 80 1 0 79 641 13 49 chain 3475 chr16 90338345 + 21440012 21440052 LTR7B 505 + 454 494 95410 40 chain 18108 chr16 90338345 + 21440233 21440516 LTR7B 505 + 0 327 58558 105 0 10 53 7 45 12 3 27 28 29 0 42 0 1 4 chain 7657 chr16 90338345 + 21440533 21440625 LTR7B 505 + 349 441 75733 16 1 0 23 0 1 52 chain 3712 chr16 90338345 + 21462829 21462872 Tigger4a 237 - 189 232 93525 43 chain 9075 chr16 90338345 + 21510916 21511576 MER4B 649 + 295 631 72392 24 0 1 77 480 139 17 34 50 28 chain 6848 chr16 90338345 + 21586753 21586838 MER30 238 + 156 238 78147 34 3 0 48 chain 8603 chr16 90338345 + 21642059 21642160 U6 107 + 6 107 73445 101 chain 4004 chr16 90338345 + 21710600 21710648 MIR 256 + 35 83 91419 48 chain 17604 chr16 90338345 + 21741671 21741907 AluSc 308 + 11 282 59114 36 0 10 60 12 37 128 chain 4516 chr16 90338345 + 21774130 21774232 MLT1F2 592 + 0 103 88232 42 25 31 5 5 0 25 chain 16735 chr16 90338345 + 21803362 21803640 THE1A 353 + 25 301 60118 22 0 1 23 57 54 176 chain 45472 chr16 90338345 + 21823306 21823814 L1PA3long 6157 + 5650 6157 31322 502 1 0 5 chain 19926 chr16 90338345 + 21865904 21866207 THE1B 368 + 1 306 56484 168 1 0 28 37 0 9 0 40 60 chain 42766 chr16 90338345 + 21866688 21867535 MER41A 554 + 13 553 32907 52 0 1 367 308 0 120 chain 130591 chr16 90338345 + 21869741 21871248 L1PA5 6144 + 4622 6132 13970 672 3 5 680 10 11 142 chain 28805 chr16 90338345 + 21871871 21872956 LTR7B 505 + 0 503 43617 38 1 2 50 0 3 12 0 10 60 0 38 12 34 27 28 0 2 80 1 0 79 641 13 49 chain 3475 chr16 90338345 + 21872280 21872320 LTR7B 505 + 454 494 95409 40 chain 18108 chr16 90338345 + 21872501 21872784 LTR7B 505 + 0 327 58557 105 0 10 53 7 45 12 3 27 28 29 0 42 0 1 4 chain 7657 chr16 90338345 + 21872801 21872893 LTR7B 505 + 349 441 75732 16 1 0 23 0 1 52 chain 5746 chr16 90338345 + 21894610 21894676 Tigger4a 237 - 166 232 82148 66 chain 30111 chr16 90338345 + 22154673 22154990 AluYb8 318 + 1 318 41933 317 chain 4602 chr16 90338345 + 22247098 22247158 MER39B 650 + 123 218 87786 14 0 35 46 chain 4809 chr16 90338345 + 22272208 22272506 L1MB7 1623 + 1364 1609 86652 11 1 0 45 191 145 14 6 0 6 1 2 10 1 0 12 chain 7939 chr16 90338345 + 22297139 22297221 tRNA-Leu-CTY 82 + 0 82 75028 82 chain 2246 chr16 90338345 + 22310586 22310636 Tigger3b 1229 + 528 579 105056 16 4 5 14 2 0 8 0 2 6 chain 10438 chr16 90338345 + 22311285 22311460 Tigger3c 601 + 142 361 69540 101 27 72 5 1 0 41 chain 11411 chr16 90338345 + 22332405 22332568 MER107 203 + 0 157 67890 58 5 0 16 0 2 76 3 0 5 chain 2490 chr16 90338345 + 22358906 22358953 L1MA4 2864 + 2754 2799 103685 13 8 6 26 chain 9772 chr16 90338345 + 22404610 22404740 MER1A 529 + 389 525 70878 69 1 7 60 chain 6255 chr16 90338345 + 22406997 22407070 L1PA8 5853 + 5780 5853 80156 73 chain 17809 chr16 90338345 + 22557793 22558029 AluSc 308 + 11 282 58881 36 0 10 60 12 37 128 chain 2502 chr16 90338345 + 22589527 22589651 LTR33 499 + 175 291 103640 20 50 48 20 22 16 12 chain 4516 chr16 90338345 + 22590273 22590375 MLT1F2 592 + 0 103 88231 42 25 31 5 5 0 25 chain 49637 chr16 90338345 + 22657401 22657933 L1PA2 6032 + 5496 6028 29705 532 chain 3267 chr16 90338345 + 22680926 22680963 MIR 256 + 68 105 97313 37 chain 11116 chr16 90338345 + 22724059 22724205 L1PA7 6471 + 6325 6470 68383 130 4 3 12 chain 52286 chr16 90338345 + 22767674 22768339 L1PA8 5853 + 5195 5853 28792 369 1 0 44 2 0 74 13 11 47 2 1 19 2 1 92 chain 21999 chr16 90338345 + 22791009 22791265 L1PA5 6144 + 5869 6125 53837 256 chain 5495 chr16 90338345 + 22844764 22844845 MSTA 426 + 262 362 83256 14 1 0 20 1 21 45 chain 46286 chr16 90338345 + 22876187 22877118 L1PB1 5432 + 4556 5422 30929 40 28 10 8 0 16 44 2 0 120 49 4 54 22 32 40 0 6 168 6 7 9 3 0 24 1 0 4 43 36 42 2 1 15 1 0 22 9 10 12 1 0 16 3 0 8 17 8 14 3 1 5 1 0 14 2 0 24 1 0 23 1 0 11 1 0 18 chain 26527 chr16 90338345 + 22977629 22977921 L1PA4 6152 + 5859 6152 46935 149 0 1 143 chain 23753 chr16 90338345 + 23045433 23045798 L1PB4 2604 + 2188 2552 51191 76 12 13 106 10 0 94 11 19 56 chain 3855 chr16 90338345 + 23053550 23053722 L1MC4a 1092 + 486 665 92463 17 111 118 44 chain 439000 chr16 90338345 + 23093879 23099003 L1P2 5180 + 2 5175 4589 112 0 1 35 1 0 50 1 0 47 1 0 268 1 0 50 1 0 218 0 15 291 0 1 86 0 11 61 1 0 322 1 0 254 0 1 50 0 1 312 0 2 16 0 2 111 1 0 105 1 0 115 0 3 247 1 0 169 0 2 229 1 0 103 0 1 208 0 2 52 0 15 125 0 1 267 0 2 707 0 2 416 2 1 44 2 1 39 chain 24808 chr16 90338345 + 23112756 23113056 AluSp 311 + 10 302 49579 284 8 0 8 chain 42943 chr16 90338345 + 23158728 23159275 MLT2A2 560 + 0 560 32814 183 1 0 216 3 14 72 0 3 72 chain 11575 chr16 90338345 + 23190086 23190248 L1PA8 5853 + 5693 5853 67616 47 2 1 15 6 5 92 chain 3337 chr16 90338345 + 23236537 23236592 L1MC1 2226 + 2135 2188 96714 14 4 3 32 1 0 4 chain 14370 chr16 90338345 + 23273983 23274167 MER30 238 + 47 238 63084 63 4 14 75 3 0 39 chain 63695 chr16 90338345 + 23299625 23300342 L1PA7 6471 + 5744 6461 25478 717 chain 4241 chr16 90338345 + 23369841 23369892 MIR 256 + 103 154 89866 51 chain 4092 chr16 90338345 + 23514407 23514455 MER39 703 + 579 627 90836 48 chain 4836 chr16 90338345 + 23542731 23542790 MLT1F2 592 + 57 116 86512 59 chain 125776 chr16 90338345 + 23582788 23584274 SVA_C 1631 + 0 1631 14588 36 0 5 403 76 0 406 0 216 565 chain 74352 chr16 90338345 + 23599483 23600443 LTR5_Hs 974 + 0 974 22992 115 5 13 161 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 26190 chr16 90338345 + 23704278 23704628 THE1B 368 + 0 368 47443 44 7 22 38 1 6 62 1 0 22 1 0 99 1 0 62 0 1 12 chain 89549 chr16 90338345 + 23722209 23723323 MER11A 1151 + 7 1151 19752 105 0 1 63 8 0 23 2 0 95 0 2 85 2 1 302 0 1 58 0 4 58 1 0 14 1 36 4 1 0 292 chain 4631 chr16 90338345 + 23784129 23784182 L1PA3long 6157 + 5856 5909 87640 53 chain 12029 chr16 90338345 + 23790491 23790745 LTR51 675 + 150 433 66798 30 76 103 27 1 2 93 2 3 25 chain 39617 chr16 90338345 + 23862743 23863489 MER41C 542 + 0 542 34949 49 0 1 259 242 37 196 chain 2685 chr16 90338345 + 24013244 24013361 MADE1 96 - 0 96 102424 20 64 43 33 chain 8740 chr16 90338345 + 24044619 24044738 MER58A 224 + 37 152 73118 100 4 0 15 chain 25880 chr16 90338345 + 24078966 24079320 LTR7B 505 + 0 505 47895 105 0 10 56 13 81 26 0 74 89 15 14 50 chain 27262 chr16 90338345 + 24201753 24202064 AluYk4 311 + 0 310 45879 118 1 0 192 chain 9387 chr16 90338345 + 24239117 24239261 THE1B 368 + 217 368 71730 15 0 8 66 14 13 49 chain 20432 chr16 90338345 + 24305525 24305811 L1PA8 5853 + 5563 5853 55854 43 2 9 63 2 1 65 6 5 11 1 0 93 chain 5688 chr16 90338345 + 24405322 24405394 LTR47A 437 + 8 80 82400 72 chain 11113 chr16 90338345 + 24441072 24441207 LTR45 522 + 263 398 68392 135 chain 5195 chr16 90338345 + 24531576 24531744 L1MC4 1079 + 385 551 84702 32 91 89 45 chain 5303 chr16 90338345 + 24533785 24533868 L1MC2 1988 + 1573 1651 84181 16 13 8 54 chain 26498 chr16 90338345 + 24625470 24625762 AluYb8 318 + 27 313 46983 96 1 0 164 5 0 26 chain 18299 chr16 90338345 + 25128723 25128969 L1PA8 5853 + 5506 5751 58359 60 0 2 41 2 0 43 0 1 25 2 1 61 2 1 10 chain 64655 chr16 90338345 + 25180831 25182947 Tigger1 2417 + 392 1585 25278 69 16 6 15 0 1 41 316 0 37 0 4 41 2 1 339 4 0 128 28 25 83 878 284 119 chain 12754 chr16 90338345 + 25222234 25222378 SVA_F 1814 + 1671 1812 65514 126 3 0 15 chain 5430 chr16 90338345 + 25292781 25292844 MER30B 195 + 132 195 83558 63 chain 31983 chr16 90338345 + 25294507 25294847 L1HS 6032 + 5691 6031 40357 340 chain 3301 chr16 90338345 + 25307710 25307751 L1MD2 1676 + 1383 1426 97002 17 0 2 24 chain 18444 chr16 90338345 + 25315698 25316054 L1PA13 3608 + 3226 3552 58175 47 2 0 62 2 1 55 1 0 4 6 4 45 8 4 18 8 7 20 3 0 11 5 0 14 1 0 6 7 1 10 4 1 12 1 0 4 chain 5948 chr16 90338345 + 25336083 25336160 MSTA 426 + 321 399 81283 41 0 1 36 chain 11127 chr16 90338345 + 25340770 25340919 L1PA16 3655 + 3376 3526 68365 39 5 6 105 chain 32280 chr16 90338345 + 25358486 25359985 LTR2 463 + 0 463 40127 49 0 1 7 1050 16 257 4 2 48 4 5 26 1 0 28 1 0 24 chain 21577 chr16 90338345 + 25368245 25369009 MER61C 433 + 0 433 54396 13 0 15 17 0 1 4 1 0 62 53 52 47 2 0 32 2 0 46 385 46 64 1 0 23 1 0 11 chain 37385 chr16 90338345 + 25379713 25380195 MER9a3 513 + 15 513 36488 95 0 1 49 1 0 98 0 17 154 6 7 20 2 0 57 chain 12780 chr16 90338345 + 25455370 25455533 L1PB 1623 + 1308 1469 65472 138 1 0 7 2 1 15 chain 25395 chr16 90338345 + 25469998 25470419 L1PA8 5853 + 5495 5853 48630 69 1 0 21 1 0 25 2 0 67 26 24 13 56 0 26 2 1 19 1 0 74 0 1 18 chain 6833 chr16 90338345 + 25478662 25478773 MLT1F 544 + 322 451 78187 19 8 17 56 3 12 25 chain 14161 chr16 90338345 + 25510088 25510272 L1PA8 5853 + 5672 5853 63366 7 1 0 14 1 0 47 2 1 112 chain 29379 chr16 90338345 + 25528305 25528682 THE1C 375 + 0 375 42774 125 9 6 49 0 1 194 chain 28387 chr16 90338345 + 25536066 25536479 MSTB-int 1649 + 0 421 44294 153 16 11 100 35 48 109 chain 536314 chr16 90338345 + 25555843 25562266 L1PA7 6471 + 0 6444 1548 411 0 2 749 0 1 193 0 1 130 1 2 197 6 3 570 0 2 371 5 0 893 1 0 360 0 1 416 2 1 662 5 1 504 0 25 126 1 0 12 0 1 159 0 1 457 0 1 55 1 6 6 5 0 125 chain 4809 chr16 90338345 + 25573121 25573362 L1MA8 2339 + 2036 2263 86650 30 144 133 29 7 5 24 1 0 6 chain 13530 chr16 90338345 + 25579474 25579673 MER41A 554 + 4 554 64276 58 1 351 108 1 0 4 0 1 7 5 6 15 chain 20800 chr16 90338345 + 25595976 25596224 L1PA6 6164 + 5914 6162 55357 248 chain 11284 chr16 90338345 + 25623564 25624225 L1PB1 5432 + 5121 5430 68107 17 1 0 8 1 0 11 18 12 51 2 1 15 1 0 22 414 79 9 2 0 24 1 0 21 2 1 12 1 0 17 1 0 5 1 0 4 chain 11457 chr16 90338345 + 25627002 25627147 LTR26 622 + 0 145 67818 145 chain 38034 chr16 90338345 + 25684899 25685334 L1PA5 6144 + 5671 6130 36050 202 0 24 233 chain 26367 chr16 90338345 + 25744633 25744990 THE1B 368 + 0 368 47168 44 0 15 109 1 0 4 2 1 8 1 0 104 9 8 75 chain 30724 chr16 90338345 + 25776246 25776633 MER4A1 472 + 26 451 41370 5 1 0 195 19 58 167 chain 11362 chr16 90338345 + 25811263 25811418 Tigger2 2703 + 2352 2501 67985 19 6 0 130 chain 35285 chr16 90338345 + 25866360 25866821 L1PA8 5853 + 5399 5853 37835 165 1 0 44 2 0 70 19 17 45 2 1 19 1 0 93 chain 20594 chr16 90338345 + 25934892 25935248 THE1D 372 + 2 372 55649 11 0 2 38 29 30 97 8 11 11 36 44 126 chain 7619 chr16 90338345 + 26028911 26029001 5S 121 + 0 90 75826 90 chain 3079 chr16 90338345 + 26082861 26082896 MLT1I 406 + 319 354 98989 35 chain 529413 chr16 90338345 + 26092621 26098741 L1PA6 6164 + 0 6162 1860 113 0 1 81 0 1 4 1 0 18 0 1 300 0 2 46 1 0 287 0 1 219 0 1 1258 0 1 130 1 0 725 0 1 281 0 22 30 0 1 429 1 0 225 0 13 487 0 1 1483 chain 4689 chr16 90338345 + 26116937 26116989 Tigger4a 237 + 170 222 87337 52 chain 23195 chr16 90338345 + 26143458 26143775 L1PA8 5853 + 5542 5851 52087 22 2 1 44 2 0 73 9 6 54 1 0 18 1 0 91 chain 9777 chr16 90338345 + 26152863 26152988 L1PB4 2604 + 2215 2340 70868 125 chain 4846 chr16 90338345 + 26179906 26180025 L1MC4 1079 + 747 865 86452 20 1 0 37 37 38 14 1 0 9 chain 24441 chr16 90338345 + 26229079 26229340 L1PA2 6032 + 5771 6032 50112 261 chain 10575 chr16 90338345 + 26307772 26307910 L1PA8 5853 + 5717 5853 69275 23 2 1 19 1 0 93 chain 12878 chr16 90338345 + 26323428 26323623 L1MA3 4352 + 4114 4306 65292 81 3 0 16 0 8 16 4 0 26 2 0 21 1 0 6 1 0 18 chain 3057 chr16 90338345 + 26335109 26335145 MADE1 96 - 59 95 99238 36 chain 19103 chr16 90338345 + 26343521 26343857 THE1D 372 + 0 344 57441 13 0 2 41 32 23 90 26 25 23 0 1 7 6 21 98 chain 512059 chr16 90338345 + 26419248 26425386 L1PA6 6164 + 4 6157 2664 393 16 15 106 5 6 694 13 14 121 1 2 976 1 3 212 0 3 578 0 1 62 0 1 18 16 15 479 0 1 592 0 1 1036 1 2 68 0 1 430 0 1 71 0 2 249 chain 297329 chr16 90338345 + 26464058 26468457 L1PBa1 4058 + 10 4040 6912 21 37 33 92 20 21 225 8 17 12 12 10 24 8 0 150 14 13 17 20 21 22 1 0 148 1 0 241 4 7 37 26 0 121 0 2 206 1 0 152 4 3 62 1 0 89 0 1 123 309 0 13 0 3 567 8 0 208 1 0 217 0 1 353 0 2 54 1 0 11 7 8 118 6 5 108 2 1 48 1 5 63 1 0 7 1 0 24 6 5 41 6 4 104 3 1 17 1 0 11 2 0 4 5 0 10 3 1 20 2 1 4 1 0 7 3 0 18 1 0 9 12 9 5 1 0 5 1 0 10 1 0 16 1 0 42 chain 43008 chr16 90338345 + 26486677 26487229 MER41A 554 + 0 554 32767 165 1 0 153 3 0 6 0 2 79 9 13 136 chain 28603 chr16 90338345 + 26558722 26559051 L1PA7 6471 + 6140 6469 43946 329 chain 4386 chr16 90338345 + 26574341 26574393 MLT1D 503 + 432 485 88965 33 0 1 19 chain 14605 chr16 90338345 + 26575367 26575539 L1PA4 6152 + 5978 6151 62793 23 1 2 148 chain 30470 chr16 90338345 + 26635301 26635660 L1PA3long 6157 + 5798 6157 41606 169 0 1 4 1 0 185 chain 3562 chr16 90338345 + 26644965 26645014 MADE1 96 + 46 94 94730 24 1 0 24 chain 28547 chr16 90338345 + 26732566 26732965 MSTA 426 + 34 426 44042 114 6 0 46 25 24 208 chain 11704 chr16 90338345 + 26741934 26742089 L1PA8 5853 + 5700 5853 67393 40 2 1 19 2 1 92 chain 42078 chr16 90338345 + 26848879 26849523 L1PA11 4918 + 3966 4578 33307 202 0 1 158 1 0 7 5 1 12 0 1 45 2 1 13 6 0 11 3 0 56 2 0 10 5 4 20 4 0 11 6 1 15 10 6 13 1 0 13 2 0 11 chain 14859 chr16 90338345 + 26850856 26851061 L1PA7 6471 + 6270 6470 62447 40 18 12 134 1 2 12 chain 20451 chr16 90338345 + 26882853 26883132 L1PA8 5853 + 5579 5853 55829 31 2 0 69 1 0 61 2 1 19 3 2 91 chain 23274 chr16 90338345 + 26918717 26919016 THE1B 368 + 5 306 51968 164 1 0 9 1 2 119 0 2 5 chain 45248 chr16 90338345 + 26942612 26943148 L1PA7 6471 + 5933 6469 31452 536 chain 17256 chr16 90338345 + 26947212 26947586 L1PA15 4387 + 4011 4366 59508 69 28 26 4 0 1 17 19 18 35 5 4 21 4 0 10 4 3 48 7 4 44 4 2 12 5 0 26 1 0 11 chain 43463 chr16 90338345 + 26969743 26970345 MER41B 635 + 0 635 32472 52 4 0 61 0 5 7 1 2 59 0 10 77 0 1 89 3 4 90 13 33 107 1 0 38 chain 45139 chr16 90338345 + 26985260 26985817 MER41A 554 + 0 554 31498 161 2 0 9 0 1 120 2 0 263 chain 3880 chr16 90338345 + 27039462 27039509 MADE1 96 + 49 96 92287 47 chain 27272 chr16 90338345 + 27056137 27056492 THE1A 353 + 0 353 45864 109 4 3 90 1 0 151 chain 33134 chr16 90338345 + 27090710 27091276 L1PB1 5432 + 4893 5427 39415 210 1 0 11 6 5 19 1 0 8 1 0 11 16 15 48 18 16 44 1 0 16 4 0 6 16 6 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 33472 chr16 90338345 + 27100935 27101370 L1PA8 5853 + 5425 5853 39114 22 0 1 114 1 0 43 1 0 5 2 0 67 1 0 8 6 5 49 3 2 19 1 0 93 chain 37156 chr16 90338345 + 27125980 27126485 L1PA8 5853 + 5350 5853 36641 214 1 0 41 9 7 47 8 12 8 1 0 56 7 6 19 2 1 92 chain 16336 chr16 90338345 + 27180529 27180741 MER44A 345 + 134 345 60589 200 1 0 11 chain 36115 chr16 90338345 + 27200966 27201445 L1PA7 6471 + 5983 6469 37333 58 0 10 374 19 19 15 3 0 10 chain 16477 chr16 90338345 + 27202503 27202857 THE1B 368 + 0 368 60406 61 0 3 6 51 53 46 66 74 59 5 6 60 chain 28658 chr16 90338345 + 27247122 27247497 THE1C 375 + 2 375 43860 19 0 2 162 1 2 26 5 1 136 1 0 25 chain 31409 chr16 90338345 + 27262296 27262836 L1PA14 3548 + 2963 3485 40805 37 2 0 5 2 0 24 0 10 61 0 1 4 1 0 7 10 6 13 2 0 6 1 0 72 12 12 111 14 9 36 18 15 4 1 0 18 1 0 41 6 0 10 1 0 20 chain 40578 chr16 90338345 + 27280378 27280821 L1PA3long 6157 + 5714 6157 34241 443 chain 17113 chr16 90338345 + 27320171 27320379 MER1A 529 + 236 444 59677 208 chain 26060 chr16 90338345 + 27380604 27380966 THE1B 368 + 0 368 47643 15 2 0 25 0 5 127 2 1 25 0 4 85 8 6 7 0 2 66 chain 8537 chr16 90338345 + 27397516 27397619 L1MB8 1703 + 993 1096 73603 103 chain 17155 chr16 90338345 + 27457704 27457921 AluSp 311 + 93 311 59626 83 3 4 131 chain 37491 chr16 90338345 + 27610707 27611173 MER4A1 472 + 0 465 36405 268 4 3 194 chain 39879 chr16 90338345 + 27656511 27656947 L1PA2 6032 + 5591 6029 34755 282 1 3 153 chain 20877 chr16 90338345 + 27668221 27668583 THE1B 368 + 0 368 55282 64 56 57 47 1 0 24 2 0 114 20 28 34 chain 4824 chr16 90338345 + 27806749 27806822 MIRb 242 + 55 121 86571 10 7 0 56 chain 4944 chr16 90338345 + 27848016 27848074 MIR 256 + 105 163 85914 58 chain 46091 chr16 90338345 + 27872467 27873102 MER41B 635 + 0 635 31020 126 5 6 318 19 18 43 0 1 101 3 2 20 chain 77038 chr16 90338345 + 27940005 27940850 L1PA3long 6157 + 5298 6144 22306 34 0 1 811 chain 9265 chr16 90338345 + 27964493 27964633 L1MA2 4263 + 3966 4111 71989 10 0 9 22 0 4 49 7 0 45 1 0 6 chain 40608 chr16 90338345 + 27993629 27994189 MER61E 571 + 0 571 34216 82 1 14 316 8 10 35 1 2 69 21 16 27 chain 4214 chr16 90338345 + 28006657 28006708 MLT1E2 623 + 538 589 90043 51 chain 3686 chr16 90338345 + 28007815 28007857 MLT1D 503 + 434 476 93699 42 chain 5123 chr16 90338345 + 28058209 28058273 MIR 256 + 61 125 85048 64 chain 4049 chr16 90338345 + 28082271 28082321 MER58B 340 + 130 180 91088 50 chain 15530 chr16 90338345 + 28221179 28221383 LTR26B 539 + 0 202 61615 190 2 0 12 chain 41718 chr16 90338345 + 28249748 28250294 MLT2A2 560 + 0 558 33539 183 1 0 216 3 14 47 3 4 26 0 1 67 chain 31473 chr16 90338345 + 28291170 28291519 L1PA4 6152 + 5804 6152 40754 343 1 0 5 chain 8097 chr16 90338345 + 28335320 28335447 L1MA3 4352 + 4179 4303 74645 78 2 1 24 2 1 5 1 0 15 chain 36589 chr16 90338345 + 28372686 28373209 MER57-int 2662 + 768 1369 37021 49 12 10 119 6 15 33 0 8 39 10 12 43 4 0 131 1 66 76 chain 122397 chr16 90338345 + 28376708 28378156 SVA_B 1603 + 0 1603 15125 21 1 3 20 1 0 152 1 0 422 0 37 17 0 40 121 1 41 5 4 0 45 0 38 14 1 0 33 0 3 486 0 2 103 chain 165346 chr16 90338345 + 28415884 28417837 SVA_F 1814 + 10 1814 11390 888 2 1 9 78 0 29 1 0 10 79 15 39 1 0 10 2 0 30 0 1 135 1 0 10 1 0 617 1 0 10 chain 5121 chr16 90338345 + 28416901 28416980 SVA_F 1814 + 1010 1089 55715 79 chain 115222 chr16 90338345 + 28435186 28436610 LTR12C 1709 + 0 1709 16353 502 0 1 8 4 3 4 0 1 131 0 278 158 1 2 24 9 6 100 6 10 180 0 4 297 chain 136618 chr16 90338345 + 28447951 28449580 SVA_D 2077 + 17 2077 13375 16 0 1 4 11 19 130 6 23 462 0 37 44 29 8 156 0 35 45 1 0 6 0 51 53 2 305 353 0 1 311 chain 2177 chr16 90338345 + 28448624 28448653 SVA_D 2077 + 772 801 64182 29 chain 6952 chr16 90338345 + 28518155 28518283 MER44A 345 + 95 221 77766 6 0 6 12 14 0 34 4 10 58 chain 20995 chr16 90338345 + 28525758 28526077 LTR2C 499 + 178 499 55131 10 3 0 114 25 27 97 9 12 61 chain 24963 chr16 90338345 + 28567483 28571012 MLT1A0-int 1658 + 0 1645 49347 10 1 2 74 0 4 36 41 46 185 3046 1146 23 0 4 47 4 6 62 chain 3566 chr16 90338345 + 28576725 28576781 L1MB8 1703 + 1289 1346 94683 19 6 7 31 chain 3257 chr16 90338345 + 28683917 28683962 L1PA16 3655 + 3535 3578 97410 13 2 0 30 chain 3257 chr16 90338345 + 28798110 28798155 L1PA16 3655 + 3535 3578 97409 13 2 0 30 chain 3268 chr16 90338345 + 28841530 28841589 Tigger2a 444 + 153 221 97312 25 3 0 8 4 16 19 chain 311615 chr16 90338345 + 29002651 29007214 HERVL-int 5654 + 1653 5654 6580 67 316 0 70 0 1 92 25 51 132 1 2 14 0 1 52 29 8 494 0 1 157 0 1 798 0 3 383 9 29 244 5 6 252 3 6 6 3 0 82 0 1 294 0 3 60 16 13 36 2 3 203 2 0 29 0 1 6 1 0 142 0 6 23 0 7 142 298 5 75 chain 15785 chr16 90338345 + 29007214 29007400 MLT2A2 560 + 0 186 61304 186 chain 3615 chr16 90338345 + 29025207 29025251 MER53 195 + 142 186 94312 44 chain 5665 chr16 90338345 + 29214133 29214203 MER41B 635 + 467 549 82489 8 0 12 62 chain 21697 chr16 90338345 + 29411959 29412278 MER83B 357 + 0 324 54229 60 29 14 13 0 3 41 0 9 94 1 9 81 chain 42322 chr16 90338345 + 29413090 29413937 MER41A 554 + 13 553 33175 36 0 1 4 1 0 11 0 1 367 308 0 120 chain 128974 chr16 90338345 + 29416134 29417641 L1PA5 6144 + 4622 6132 14149 672 3 5 680 10 11 142 chain 22963 chr16 90338345 + 29418264 29418713 LTR7B 505 + 0 494 52421 38 1 2 50 0 3 12 0 10 60 0 38 12 34 27 16 67 69 28 1 0 76 14 13 40 chain 28076 chr16 90338345 + 29418894 29419348 LTR7B 505 + 0 503 44756 105 0 10 53 7 45 12 3 27 28 29 0 42 0 1 4 16 22 16 1 0 23 0 1 52 14 13 49 chain 5624 chr16 90338345 + 29442522 29442588 Tigger4a 237 - 166 232 82695 66 chain 88510 chr16 90338345 + 29470991 29471999 LTR13 1007 + 0 1007 19942 429 2 1 577 chain 26207 chr16 90338345 + 29476490 29476793 SVA_D 2077 + 1539 2073 47405 7 0 3 215 0 228 81 chain 20251 chr16 90338345 + 29513756 29514075 MER83B 357 + 0 324 56081 60 29 14 13 7 10 34 0 9 94 1 9 81 chain 21087 chr16 90338345 + 29514102 29514401 THE1B 368 + 1 306 55021 168 1 0 29 0 3 13 18 22 70 chain 42861 chr16 90338345 + 29514883 29515729 MER41A 554 + 13 553 32860 52 0 1 367 307 0 120 chain 129598 chr16 90338345 + 29517929 29519437 L1PA5 6144 + 4622 6132 14086 672 4 5 680 10 11 142 chain 28766 chr16 90338345 + 29520060 29520509 LTR7B 505 + 0 494 43679 38 1 2 50 0 3 12 0 10 60 0 38 12 34 27 28 0 2 77 1 0 82 14 13 40 chain 28959 chr16 90338345 + 29520690 29521144 LTR7B 505 + 0 503 43394 105 0 10 60 0 38 12 3 27 28 29 0 42 0 1 4 16 22 16 1 0 23 0 1 52 14 13 49 chain 5624 chr16 90338345 + 29544287 29544353 Tigger4a 237 - 166 232 82694 66 chain 34571 chr16 90338345 + 29707488 29707968 LTR2B 499 + 0 499 38304 15 0 3 56 14 11 26 0 19 165 13 14 8 1 0 182 chain 45218 chr16 90338345 + 29708768 29709406 LTR9B 643 + 2 643 31470 63 0 3 133 10 9 31 0 1 22 1 0 157 29 30 49 1 0 93 4 5 45 chain 93913 chr16 90338345 + 29715502 29718749 HUERS-P3b-int 2065 + 594 2031 19053 93 4 0 64 0 5 20 12 11 41 1 0 13 270 0 9 1 0 25 33 1 67 310 0 132 314 4 5 0 1 46 0 1 87 4 5 164 1 2 77 267 15 33 29 2 22 5 9 53 2 0 13 1 0 25 1 0 28 0 3 58 3 1 39 608 0 33 2 0 20 4 1 62 4 0 57 1 0 33 0 2 10 13 17 28 chain 29176 chr16 90338345 + 29719144 29719548 LTR9B 643 + 222 630 43088 197 15 18 157 14 15 21 chain 8443 chr16 90338345 + 29748789 29749144 LTR12C 1709 + 773 1535 73813 61 0 325 49 227 309 18 chain 3861 chr16 90338345 + 29749591 29749634 LTR8 732 + 574 617 92404 43 chain 79508 chr16 90338345 + 29782761 29784041 MER11A 1151 + 0 1143 21740 79 10 18 133 1 0 11 0 2 46 21 19 42 34 0 38 0 1 9 148 0 45 0 1 116 1 0 122 6 9 12 1 2 38 0 4 114 9 41 96 10 9 25 5 4 49 1 0 58 chain 4395 chr16 90338345 + 29796571 29796623 MER5A1 166 + 38 90 88916 52 chain 3825 chr16 90338345 + 29938598 29938698 MER90a 614 + 149 246 92679 20 11 12 12 18 15 20 1 0 18 chain 38464 chr16 90338345 + 29942903 29943749 LTR19B 566 + 0 566 35747 230 310 0 92 13 34 78 0 4 35 18 26 15 4 1 51 chain 21595 chr16 90338345 + 29954326 29954596 AluSp 311 + 15 283 54366 105 1 2 10 3 0 151 chain 23617 chr16 90338345 + 30075443 30075752 AluSp 311 + 0 296 51401 50 21 5 209 0 3 29 chain 5154 chr16 90338345 + 30105118 30105182 MER63B 433 + 43 107 84891 64 chain 39197 chr16 90338345 + 30158706 30159152 SVA_A 1864 + 18 876 35218 7 4 0 419 0 416 16 chain 83496 chr16 90338345 + 30168453 30169652 SVA_D 2077 + 328 1468 20194 58 0 68 347 40 0 102 3 0 15 0 36 80 2 4 219 0 1 4 112 37 8 0 1 115 49 0 45 chain 5740 chr16 90338345 + 30169323 30169435 SVA_D 2077 + 1034 1095 52985 59 51 0 2 chain 2551 chr16 90338345 + 30169383 30169433 SVA_D 2077 + 993 1044 55093 44 0 1 6 chain 4213 chr16 90338345 + 30169558 30169607 SVA_F 1814 + 915 979 37269 33 0 15 16 chain 89298 chr16 90338345 + 30169652 30170930 SVA_F 1814 + 664 1812 19802 72 0 119 27 1 2 64 126 14 299 138 0 194 0 3 339 3 0 15 chain 8943 chr16 90338345 + 30169816 30169920 SVA_F 1814 + 1188 1291 37269 86 1 0 17 chain 6744 chr16 90338345 + 30170241 30170379 SVA_F 1814 + 1085 1224 39870 101 0 1 37 chain 88510 chr16 90338345 + 30210335 30211343 LTR13 1007 + 0 1007 19941 429 2 1 577 chain 26207 chr16 90338345 + 30215831 30216134 SVA_D 2077 + 1539 2073 47406 7 0 3 215 0 228 81 chain 20251 chr16 90338345 + 30253741 30254060 MER83B 357 + 0 324 56080 60 29 14 13 7 10 34 0 9 94 1 9 81 chain 21087 chr16 90338345 + 30254087 30254386 THE1B 368 + 1 306 55020 168 1 0 29 0 3 13 18 22 70 chain 42861 chr16 90338345 + 30254868 30255714 MER41A 554 + 13 553 32859 52 0 1 367 307 0 120 chain 129598 chr16 90338345 + 30257911 30259419 L1PA5 6144 + 4622 6132 14085 672 4 5 680 10 11 142 chain 28561 chr16 90338345 + 30260042 30260491 LTR7B 505 + 0 494 44016 38 1 2 50 0 3 12 0 10 60 0 38 12 34 27 28 0 2 77 1 0 82 14 13 40 chain 29090 chr16 90338345 + 30260672 30261126 LTR7B 505 + 0 503 43205 105 0 10 60 0 38 12 3 27 28 29 0 42 0 1 4 16 22 16 1 0 23 0 1 52 14 13 49 chain 3712 chr16 90338345 + 30284314 30284357 Tigger4a 237 - 189 232 93524 43 chain 21629 chr16 90338345 + 30384254 30384535 AluSc 308 + 8 292 54313 123 1 0 18 2 3 29 5 8 103 chain 5998 chr16 90338345 + 30471622 30471700 HY3 101 + 21 99 81079 78 chain 26488 chr16 90338345 + 30506278 30506587 AluY 311 + 1 311 46995 13 0 6 106 5 0 185 chain 18430 chr16 90338345 + 30589789 30590009 Tigger2 2703 + 548 768 58194 220 chain 30891 chr16 90338345 + 30629215 30629638 LTR43 600 + 39 474 41224 24 0 8 144 0 1 29 1 0 5 6 12 178 3 1 33 chain 6228 chr16 90338345 + 30757876 30758008 MIR 256 + 71 209 80243 52 43 49 37 chain 25155 chr16 90338345 + 30821529 30821930 LTR3B 427 + 14 407 49026 93 25 27 43 6 0 20 10 0 131 1 7 17 1 0 7 1 2 46 chain 26059 chr16 90338345 + 30841366 30842108 LTR3A 482 + 26 442 47646 83 0 1 99 75 64 13 0 1 24 317 0 69 0 1 21 2 1 39 chain 29650 chr16 90338345 + 30859451 30859864 LTR7B 505 + 0 491 42429 105 0 10 56 15 22 41 2 23 54 0 41 89 14 13 37 chain 71019 chr16 90338345 + 30862145 30863239 HERVH-int 3825 + 2282 3824 23756 98 12 398 197 165 0 40 1 0 287 2 1 74 1 5 34 0 225 183 chain 26073 chr16 90338345 + 30864664 30865361 LTR7B 505 + 0 476 47619 91 0 5 9 0 10 56 24 20 5 0 1 37 2 23 11 294 0 43 1 42 88 14 13 22 chain 5216 chr16 90338345 + 30867946 30868100 MLT1D 503 + 335 417 84600 19 1 0 14 74 3 46 chain 20634 chr16 90338345 + 31055437 31055674 AluY 311 + 58 295 55578 237 chain 8093 chr16 90338345 + 31100452 31100651 LTR18B 584 + 93 277 74655 13 30 19 4 1 0 59 13 23 17 27 14 35 chain 99111 chr16 90338345 + 31103607 31104750 SVA_D 2077 + 1 1335 18400 35 2 0 11 0 12 149 3 1 508 1 2 189 3 185 242 chain 6482 chr16 90338345 + 31104750 31104843 SVA_E 1901 + 954 1046 36882 56 1 0 36 chain 64350 chr16 90338345 + 31104843 31105708 SVA_E 1901 + 669 1901 25338 35 0 80 28 1 0 5 1 0 109 15 12 92 49 0 65 1 0 72 40 68 125 0 314 227 chain 2732 chr16 90338345 + 31105316 31105354 SVA_E 1901 + 992 1029 55227 16 1 0 21 chain 78676 chr16 90338345 + 31169360 31170233 SVA_D 2077 + 593 2013 21945 94 0 40 186 0 488 44 1 0 478 0 20 70 chain 6892 chr16 90338345 + 31216346 31216422 LTR12D 1347 + 831 907 77984 76 chain 35972 chr16 90338345 + 31230077 31230865 LTR15 485 + 3 475 37426 276 1 5 81 309 0 31 2 1 31 4 0 12 7 0 14 4 5 16 chain 132562 chr16 90338345 + 31231576 31233097 SVA_D 2077 + 6 1740 13774 127 1 0 466 0 40 48 0 40 160 0 83 63 3 5 181 49 0 84 0 98 339 chain 3552 chr16 90338345 + 31232625 31232674 SVA_D 2077 + 1043 1091 38116 5 1 0 43 chain 119902 chr16 90338345 + 31288420 31289766 L1PA5 6144 + 4795 6144 15554 502 0 4 584 1 0 259 chain 122564 chr16 90338345 + 31310932 31312296 L1PA4 6152 + 4788 6152 15103 1364 chain 549627 chr16 90338345 + 31337869 31344038 L1PA4 6152 + 0 6152 777 128 14 0 750 11 9 1281 0 1 1040 1 0 78 1 0 2865 chain 24343 chr16 90338345 + 31438875 31439150 L1PA5 6144 + 5858 6132 50258 268 1 0 6 chain 87450 chr16 90338345 + 31516734 31517805 MER11B 1079 + 0 1063 20140 259 3 0 279 1 0 4 0 1 168 0 1 60 8 2 289 chain 37311 chr16 90338345 + 31539732 31540221 MER9a3 513 + 15 506 36542 80 15 16 145 1 0 148 4 5 24 2 3 70 chain 165396 chr16 90338345 + 31540844 31542892 HERVK9-int 4720 + 183 4720 11385 119 10 11 824 8 13 519 26 2509 515 9 8 5 0 1 13 chain 37106 chr16 90338345 + 31542904 31543400 MER9a3 513 + 15 513 36674 51 0 2 32 10 11 145 6 5 172 2 3 58 1 0 19 chain 50901 chr16 90338345 + 31544439 31545028 LTR10C 591 + 0 591 29239 508 0 2 81 chain 30981 chr16 90338345 + 31549368 31549881 MER41C 542 + 1 542 41146 48 0 1 13 16 57 11 2 6 37 8 0 7 3 11 118 5 6 95 36 17 114 chain 88842 chr16 90338345 + 31558986 31560252 L1PA14 3548 + 2234 3465 19884 455 1 0 161 1 0 69 0 1 18 19 15 48 2 0 4 2 0 53 4 0 54 7 3 16 2 0 6 1 0 84 1 0 81 1 0 30 1 0 8 14 10 9 0 2 17 4 2 13 1 0 3 1 0 19 1 0 41 5 0 9 chain 474308 chr16 90338345 + 31608083 31615014 L1PA8A 6298 + 101 6291 3758 18 39 29 8 1 0 22 2 0 11 2 0 5 57 50 12 6 1 9 2 0 31 12 11 22 8 0 77 2 0 8 27 24 37 9 7 23 6 5 393 0 1 117 430 0 80 0 4 116 4 3 39 1 4 178 0 1 337 0 1 35 3 9 233 1 0 404 1 7 25 1 3 4 1 0 74 0 14 501 309 3 411 0 1 115 0 1 73 0 1 162 2 0 6 0 2 8 1 2 236 0 1 328 1 2 617 0 3 163 1 0 255 2 0 292 0 1 406 4 3 105 chain 70464 chr16 90338345 + 31655617 31656547 L1PA8 5853 + 4785 5853 23876 221 8 6 72 0 2 40 0 1 211 15 158 24 0 1 41 1 0 46 2 0 70 2 1 14 1 0 47 2 1 19 1 0 93 chain 14249 chr16 90338345 + 31658222 31658413 L1PA8 5853 + 5564 5760 63271 45 2 0 70 1 0 8 2 1 45 0 9 18 chain 8392 chr16 90338345 + 31658415 31658507 L1PA8 5853 + 5761 5853 73919 92 chain 41710 chr16 90338345 + 31659960 31660570 LTR14B 630 + 8 630 33546 102 10 0 146 5 37 5 0 1 52 0 21 21 0 9 39 5 0 5 33 0 68 2 0 99 1 0 17 chain 116054 chr16 90338345 + 31660777 31662446 HERVK14-int 1672 + 6 1659 16224 24 1 0 4 7 6 50 1 0 195 21 20 35 2 0 160 0 1 68 7 6 36 1 0 208 1 0 13 6 8 142 1 0 75 18 14 33 2 1 203 1 0 89 0 1 18 7 6 52 6 5 16 29 27 137 chain 499605 chr16 90338345 + 31687221 31692910 L1PA4 6152 + 2 5737 3142 126 0 14 160 1 0 359 0 1 293 0 4 188 0 5 29 0 4 51 0 1 851 0 2 1425 0 1 605 0 12 218 0 4 387 4 0 561 0 3 431 chain 38946 chr16 90338345 + 31739693 31740221 MER9a3 513 + 0 513 35398 18 0 2 78 12 13 147 1 0 15 19 1 110 3 2 47 2 3 50 0 1 26 chain 278707 chr16 90338345 + 31772375 31776321 L1PA10 4194 + 223 4097 7463 9 2 0 9 1 0 9 1 0 21 3 1 14 1 0 8 45 19 22 2 0 23 1 0 5 1 0 7 1 0 10 1 0 15 10 0 8 1 0 85 7 5 57 11 21 117 23 27 34 33 36 75 6 14 23 0 1 655 1 2 92 0 2 7 17 13 272 1 0 81 0 3 247 18 28 246 0 1 74 0 3 47 16 8 164 4 0 285 9 2 8 3 0 55 0 1 192 9 5 7 34 0 684 6 4 11 chain 46938 chr16 90338345 + 31813573 31814092 L1P1 4361 + 2965 3484 30682 519 chain 316703 chr16 90338345 + 31825959 31830591 L1PA3long 6157 + 1810 6157 6474 12 0 1 6 40 39 74 350 353 25 1 2 5 1 0 11 86 92 67 18 31 36 0 3 6 3 0 160 60 62 184 310 0 2505 1 2 671 chain 20821 chr16 90338345 + 31830604 31830983 L1P4 1494 + 100 495 55336 27 1 0 18 7 6 7 0 2 41 13 15 19 6 10 108 45 55 87 chain 42259 chr16 90338345 + 31833250 31833763 MER75 514 + 0 514 33212 255 0 1 258 chain 119105 chr16 90338345 + 31836071 31837418 SVA_D 2077 + 345 2076 15677 533 0 83 43 0 51 145 0 257 158 12 5 456 chain 18249 chr16 90338345 + 31838868 31839107 L1PB4 2604 + 2135 2374 58413 109 0 5 10 8 3 112 chain 43631 chr16 90338345 + 31848235 31848865 LTR10E 629 + 0 622 32365 18 3 2 134 0 1 5 17 14 122 3 2 26 1 0 55 8 7 175 26 24 37 chain 25167 chr16 90338345 + 31859004 31860383 L1PA8 5853 + 5488 5853 49012 76 1 0 45 2 0 70 1 0 9 1 0 16 1027 20 16 2 1 19 1 0 93 chain 24490 chr16 90338345 + 31891466 31891825 THE1B 368 + 0 368 50045 103 0 1 65 1 0 29 35 45 105 2 1 19 chain 17514 chr16 90338345 + 31891825 31892049 THE1B-int 1605 + 0 220 59230 41 8 4 175 chain 69498 chr16 90338345 + 31898810 31899641 L1P1 4361 + 2250 3090 24121 64 0 1 63 0 4 181 0 4 523 chain 556619 chr16 90338345 + 31937557 31943695 L1PA3long 6157 + 6 6150 321 320 0 3 1412 0 2 511 0 1 1432 0 1 515 2 0 1645 0 1 301 chain 232614 chr16 90338345 + 31966224 31969143 L1PA7 6471 + 3535 6459 8678 742 6 8 125 0 1 275 4 0 333 14 1 198 4 0 63 1 0 48 2 5 256 0 10 23 0 5 65 2 1 6 0 2 94 1 5 427 0 1 230 chain 233207 chr16 90338345 + 32075999 32078662 L1PA5 6144 + 2841 5509 8659 33 4 0 102 0 1 518 0 1 1324 0 2 76 0 1 398 0 4 208 chain 59096 chr16 90338345 + 32102635 32103291 L1PA2 6032 + 4747 5405 26638 564 0 2 92 chain 75661 chr16 90338345 + 32149448 32150279 L1PA3long 6157 + 3840 4671 22673 831 chain 135468 chr16 90338345 + 32150280 32151761 L1PA3long 6157 + 4671 6152 13490 1481 chain 57663 chr16 90338345 + 32216784 32217515 L1PA7 6471 + 5725 6459 27063 162 2 0 104 7 16 129 0 1 170 0 1 13 7 1 137 chain 27886 chr16 90338345 + 32227697 32228166 THE1B-int 1605 + 35 524 45059 120 52 0 36 21 30 63 2 1 93 17 81 65 chain 74269 chr16 90338345 + 32242952 32243823 LTR13A 966 + 7 878 23010 78 1 0 43 0 1 749 chain 66043 chr16 90338345 + 32324019 32324764 L1PA5 6144 + 5399 6144 24947 745 chain 4272 chr16 90338345 + 32345085 32345141 L1MB7 1623 + 1365 1420 89685 5 1 0 50 chain 111616 chr16 90338345 + 32370380 32371677 L1P1 4361 + 3047 4341 16859 1103 1 0 155 1 0 23 2 1 12 chain 7716 chr16 90338345 + 32380578 32380675 L1PA7 6471 + 6374 6468 75576 15 0 1 72 4 0 6 chain 5297 chr16 90338345 + 32403572 32403799 MLT1F2 592 + 223 559 84211 18 128 235 35 9 10 33 0 1 4 chain 97812 chr16 90338345 + 32561383 32562472 L1PA2 6032 + 4819 6026 18546 353 0 1 420 0 116 177 0 1 139 chain 50507 chr16 90338345 + 32578113 32578704 L1PA4 6152 + 4385 4976 29379 591 chain 5749 chr16 90338345 + 32639021 32639099 LTR15 485 + 411 485 82130 25 4 0 49 chain 26999 chr16 90338345 + 32682935 32683341 LTR3A 482 + 11 420 46275 98 0 1 5 0 1 28 0 1 74 40 41 4 1 0 83 0 1 47 13 12 13 chain 79645 chr16 90338345 + 32696852 32697810 LTR13A 966 + 0 966 21708 42 0 3 38 0 1 360 2 0 145 1 9 69 2 0 299 chain 55766 chr16 90338345 + 32825256 32825877 L1PA2 6032 + 5409 6031 27640 468 1 2 152 chain 43717 chr16 90338345 + 32848916 32849410 L1PA3long 6157 + 5658 6157 32311 315 0 3 174 0 2 5 chain 164072 chr16 90338345 + 32850597 32852669 L1PA7 6471 + 4384 6457 11478 390 0 1 180 1 0 237 1 5 14 6 5 323 1 2 4 1 0 68 1 4 85 0 1 4 1 0 213 4 0 216 0 1 150 4 0 36 2 0 5 1 5 124 chain 99328 chr16 90338345 + 32891324 32892926 L1P2 5180 + 461 1740 18372 45 11 10 271 1 0 6 1 0 136 323 0 73 0 1 4 2 1 123 0 1 100 0 1 213 1 0 10 0 1 42 1 2 239 chain 227960 chr16 90338345 + 32907734 32910645 L1PA7 6471 + 3535 6459 8811 479 2 1 262 6 8 125 0 1 608 8 1 164 7 11 23 4 0 63 1 0 48 2 5 258 0 10 22 1 5 64 2 1 6 0 2 94 1 5 427 0 1 166 6 2 62 chain 179697 chr16 90338345 + 33019244 33021292 L1PA5 6144 + 2841 4889 10603 33 4 0 102 0 1 518 0 1 1324 0 2 67 chain 59097 chr16 90338345 + 33045918 33046577 L1PA2 6032 + 4747 5407 26637 566 0 1 93 chain 210963 chr16 90338345 + 33092365 33094677 L1PA3long 6157 + 3840 6152 9321 2312 chain 57235 chr16 90338345 + 33157744 33158475 L1PA7 6471 + 5725 6459 27185 162 2 0 104 7 16 129 0 1 170 0 1 13 7 1 137 chain 27755 chr16 90338345 + 33168661 33169130 THE1B-int 1605 + 35 524 45243 120 52 0 36 21 30 63 2 1 93 17 81 65 chain 74138 chr16 90338345 + 33183918 33184789 LTR13A 966 + 7 878 23056 78 1 0 43 0 1 749 chain 57235 chr16 90338345 + 33267824 33268555 L1PA7 6471 + 5725 6459 27184 162 2 0 104 7 16 129 0 1 170 0 1 13 7 1 137 chain 27755 chr16 90338345 + 33278741 33279210 THE1B-int 1605 + 35 524 45242 120 52 0 36 21 30 63 2 1 93 17 81 65 chain 74138 chr16 90338345 + 33293998 33294869 LTR13A 966 + 7 878 23055 78 1 0 43 0 1 749 chain 74138 chr16 90338345 + 33350531 33351402 LTR13A 966 + 7 878 23054 78 1 0 43 0 1 749 chain 74138 chr16 90338345 + 33449302 33450173 LTR13A 966 + 7 878 23053 78 1 0 43 0 1 749 chain 65799 chr16 90338345 + 33530304 33531049 L1PA5 6144 + 5399 6144 25004 745 chain 4048 chr16 90338345 + 33643761 33643804 MADE1 96 + 53 96 91099 43 chain 456590 chr16 90338345 + 33649378 33654840 L1PA7 6471 + 920 6468 4219 754 20 19 65 0 1 50 0 1 615 0 2 93 0 2 117 0 2 748 10 70 545 7 6 253 11 18 204 1 2 99 1 9 360 2 1 463 0 1 4 0 1 197 0 3 307 1 0 22 0 1 513 chain 34899 chr16 90338345 + 33814169 33814574 MER11D 897 + 470 897 38094 103 0 23 116 1 0 185 chain 125996 chr16 90338345 + 33839649 33841298 L1PA8 5853 + 4219 5853 14559 137 8 9 234 0 1 347 0 1 54 1 0 7 3 0 85 2 0 376 0 3 5 13 11 75 1 0 44 2 0 70 31 23 37 11 10 12 4 3 90 chain 75974 chr16 90338345 + 33946138 33947137 L1PA7 6471 + 2539 3532 22586 98 24 0 37 1 3 429 5 17 293 0 4 70 7 6 13 0 1 22 chain 16838 chr16 90338345 + 34010945 34011202 L1PA7 6471 + 4102 4360 59988 97 9 9 51 23 24 77 chain 510767 chr16 90338345 + 34018674 34024592 L1PA3long 6157 + 0 6051 2730 698 1 8 257 0 1 966 5 6 515 0 4 242 1 0 586 1 0 292 0 1 434 0 1 343 0 4 110 1 117 1466 chain 40380 chr16 90338345 + 34040172 34040616 L1PA3long 6157 + 5380 5824 34398 444 chain 28838 chr16 90338345 + 34040617 34040949 L1PA3long 6157 + 5824 6156 43574 332 chain 93934 chr16 90338345 + 34108773 34109816 L1PA3long 6157 + 4964 6007 19049 859 0 1 174 1 0 9 chain 12046 chr16 90338345 + 34109816 34109960 L1PA3long 6157 + 6008 6152 66766 144 chain 58998 chr16 90338345 + 34118474 34119193 L1HS 6032 + 6 724 26668 243 8 7 468 chain 3573 chr16 90338345 + 34143471 34143513 Tigger1 2417 - 802 844 94640 42 chain 82377 chr16 90338345 + 34144085 34145098 LTR5A 1029 + 0 1029 21161 51 5 4 23 0 2 12 0 1 57 0 13 608 0 1 257 chain 90955 chr16 90338345 + 34177933 34178988 L1P1 4361 + 2926 3983 19512 733 0 1 274 0 1 48 chain 285919 chr16 90338345 + 34339329 34342804 HERVK9-int 4720 + 1229 4720 7260 131 2 1 5 0 1 953 0 3 565 1 2 262 4 3 29 0 1 20 0 1 104 0 1 84 0 3 108 1 3 594 7 6 31 8 9 22 0 4 220 0 1 324 chain 39925 chr16 90338345 + 34342804 34343308 MER9a3 513 + 0 513 34719 17 3 5 15 0 1 72 0 1 323 0 1 14 3 7 57 chain 10862 chr16 90338345 + 34377317 34377457 MSTB 430 + 22 169 68757 48 0 9 85 2 0 5 chain 11155 chr16 90338345 + 34431339 34431473 L1PB1 5432 + 4506 4643 68337 123 0 3 11 chain 20788 chr16 90338345 + 34465283 34465592 THE1B 368 + 6 339 55382 38 0 15 110 1 0 29 35 45 96 chain 19745 chr16 90338345 + 34515127 34515438 THE1B 368 + 6 341 56734 38 0 15 110 1 0 29 41 51 92 chain 32078 chr16 90338345 + 34519983 34520362 L1PA2 6032 + 5646 6029 40289 49 0 1 181 1 4 148 chain 3953 chr16 90338345 + 34775757 34775959 L1MB7 1623 + 363 566 91741 27 105 105 14 24 25 32 chain 91219 chr16 90338345 + 34838814 34839882 L1P1 4361 + 3254 4323 19465 7 0 2 240 0 1 646 1 0 155 1 0 18 chain 31364 chr16 90338345 + 34982054 34982511 L1PB 1623 + 112 538 40839 5 1 0 49 5 2 20 7 4 77 1 0 130 1 0 85 22 0 54 chain 40607 chr16 90338345 + 34994344 34994892 MER41A 554 + 0 553 34217 222 1 2 149 1 0 21 4 3 32 5 6 17 0 4 60 0 1 36 chain 171642 chr16 90338345 + 34995011 34997025 L1P1 4361 + 1 2034 11013 112 35 49 387 0 1 91 0 1 412 0 2 174 0 1 803 chain 43932 chr16 90338345 + 34997025 34998012 HERVK-int 6823 + 5425 6567 32176 68 9 297 58 1 0 36 1 0 124 1 0 49 3 0 5 1 0 7 1 0 3 1 0 74 3 1 7 1 0 24 17 11 13 1 0 18 2 0 3 1 0 8 1 0 5 172 101 9 2 0 12 1 0 14 3 1 11 2 0 30 8 3 7 1 0 3 1 0 10 10 6 10 11 5 7 1 0 8 1 0 5 1 0 26 1 0 4 1 0 10 37 28 17 1 0 4 chain 73151 chr16 90338345 + 34998813 34999771 LTR5_Hs 974 + 0 974 23285 115 5 13 161 0 1 159 0 2 16 0 1 103 0 1 4 1 0 80 1 0 163 8 15 19 20 18 103 chain 107403 chr16 90338345 + 35009794 35011624 L1PB3 3668 + 1834 3620 17396 4 0 1 37 8 0 19 0 3 147 15 18 27 44 28 82 0 4 180 2 1 15 6 7 25 4 7 216 29 29 64 8 6 233 2 0 18 9 6 67 0 5 59 56 93 8 39 0 48 1 0 83 1 2 10 6 5 86 21 5 18 3 1 30 2 0 19 59 51 13 1 0 6 chain 35259 chr16 90338345 + 35016889 35017379 MLT2A1 477 + 0 477 37858 169 4 1 193 2 0 20 0 2 18 29 23 13 4 0 38 chain 525458 chr16 90338345 + 35074915 35080918 L1PA3long 6157 + 10 6155 2025 143 1 2 79 0 1 479 8 1 50 15 143 479 0 1 1202 1 0 231 0 1 317 0 7 549 0 1 250 0 1 415 0 4 451 0 5 1333 chain 7744 chr16 90338345 + 35095691 35095879 MER30 238 + 0 236 75500 15 0 18 22 47 70 13 2 0 14 0 6 41 12 15 22 chain 181578 chr16 90338345 + 35116170 35118187 L1PA3long 6157 + 2886 4924 10522 1880 0 21 137 chain 3179 chr16 90338345 + 35130002 35130038 LTR14C 587 + 396 432 98114 36 chain 88770 chr16 90338345 + 35153436 35154456 LTR5A 1029 + 0 1029 19896 116 0 3 31 1 0 164 0 7 708 chain 234218 chr16 90338345 + 35157426 35160155 L1P1 4361 + 31 2769 8633 1025 0 2 77 1 7 292 0 1 1334 chain 526136 chr16 90338345 + 35160155 35166168 L1PA3long 6157 + 1 6156 1992 152 1 2 621 0 128 250 8 11 1387 0 1 22 0 5 1115 1 0 178 0 1 1172 0 12 947 7 0 147 1 0 4 chain 276902 chr16 90338345 + 35166184 35169330 L1PA4 6152 + 2759 5911 7525 71 0 4 348 0 1 326 1 0 172 1 0 754 0 1 884 0 1 158 0 1 431 chain 37694 chr16 90338345 + 35260731 35261192 LTR2 463 + 0 463 36277 129 0 3 123 1 0 208 chain 35656 chr16 90338345 + 35282158 35282553 L1PA3long 6157 + 5479 5874 37626 395 chain 25554 chr16 90338345 + 35282553 35282834 L1PA3long 6157 + 5875 6156 48394 281 chain 103336 chr16 90338345 + 35284862 35286147 L1PA7 6471 + 4900 6466 17908 397 0 1 174 1 290 235 12 3 466 chain 441139 chr16 90338345 + 35287186 35292239 L1PA4 6152 + 3 5053 4551 453 12 6 118 1 0 650 0 1 5 0 1 29 0 1 2673 0 1 300 1 0 330 0 1 481 chain 55438 chr16 90338345 + 35314787 35315435 LTR6A 649 + 0 649 27738 201 1 0 235 0 1 199 0 1 12 chain 40364 chr16 90338345 + 35337275 35337884 LTR10E 629 + 0 621 34406 15 2 0 5 0 1 143 8 10 40 18 32 47 8 7 259 22 20 42 chain 30091 chr16 90338345 + 35358865 35359185 L1PA2 6032 + 5712 6032 41962 320 chain 18141 chr16 90338345 + 35400173 35400539 THE1B 368 + 0 368 58522 104 33 34 36 80 81 113 chain 52365 chr16 90338345 + 35416818 35418516 L1PA8 5853 + 5087 5843 28768 19 935 0 458 2 1 43 2 0 72 1 0 8 1 0 52 2 1 17 9 8 59 2 0 5 0 2 11 chain 529484 chr16 90338345 + 35468696 35474689 L1PA3long 6157 + 19 6156 1853 132 1 2 16 1 2 353 0 4 227 21 149 2133 0 1 470 0 2 989 0 6 115 0 1 1535 chain 58250 chr16 90338345 + 35537679 35538312 L1PA3long 6157 + 5524 6157 26882 633 chain 32109 chr16 90338345 + 35560629 35561017 LTR3 431 + 27 422 40264 196 0 1 154 0 6 38 chain 75080 chr16 90338345 + 35590762 35591739 LTR13 1007 + 0 1007 22827 73 2 0 146 4 0 126 5 6 12 0 1 17 4 5 98 0 25 185 1 9 112 0 1 161 1 0 30 chain 38515 chr16 90338345 + 35647852 35648300 L1P1 4361 + 3873 4328 35697 123 0 9 145 1 0 155 1 0 23 chain 451287 chr16 90338345 + 35663755 35670272 L1PA6 6164 + 4 6161 4356 222 27 30 138 36 33 21 55 36 85 1 0 183 0 1 34 0 17 31 0 1 17 0 2 17 17 16 64 6 4 298 45 44 47 11 12 88 3 1 319 5 6 52 2 0 6 1 3 210 1 0 279 13 15 21 1 2 31 0 2 164 0 17 472 5 6 19 1 0 114 1 2 5 2 0 47 0 4 279 0 1 29 8 10 47 26 0 88 1 0 642 0 4 337 0 1 204 13 11 293 272 0 127 19 20 20 0 2 194 1 4 214 107 13 379 chain 66353 chr16 90338345 + 35698411 35699145 L1PA3long 6157 + 3765 4499 24859 734 chain 72254 chr16 90338345 + 35699145 35699946 L1PA3long 6157 + 4505 5306 23473 801 chain 75941 chr16 90338345 + 35699946 35700796 L1PA3long 6157 + 5307 6157 22597 850 chain 10221 chr16 90338345 + 35723313 35723457 LTR10E 629 + 481 627 69968 80 5 8 53 1 0 5 chain 13818 chr16 90338345 + 35856558 35856738 HERVK22-int 3844 + 3665 3844 63850 85 1 0 94 chain 412669 chr16 90338345 + 35943711 35948725 L1PA4 6152 + 7 5028 4993 850 0 3 454 13 14 1881 1 0 40 28 32 176 1 0 231 0 1 1339 chain 129907 chr16 90338345 + 35953747 35964909 L1PA3long 6157 + 4354 6157 14050 81 9364 0 875 0 4 683 15 16 144 chain 49713 chr16 90338345 + 35958589 35959254 L1P1 4361 + 2 739 29681 74 22 94 45 0 1 358 10 9 156 chain 97361 chr16 90338345 + 36028726 36029879 L1PA3long 6157 + 4988 6146 18615 472 1 2 276 0 1 29 0 2 242 3 4 130 chain 32788 chr16 90338345 + 36048853 36049240 L1PA3long 6157 + 4113 4500 39678 387 chain 549678 chr16 90338345 + 36071922 36077950 L1PA2 6032 + 0 6028 768 316 0 1 171 0 1 2643 1 0 942 1 0 1954 chain 28896 chr16 90338345 + 37462681 37463004 L1HS 6032 + 1540 1864 43484 230 0 1 60 1 0 13 0 1 19 chain 11293 chr16 90338345 + 37946293 37946415 L1HS 6032 + 5910 6032 68090 122 chain 45083 chr16 90338345 + 37955919 37956425 L1HS 6032 + 1540 2045 31540 334 1 0 66 1 0 45 0 1 59 chain 27705 chr16 90338345 + 46439904 46440223 AluYb8 318 + 0 309 45308 132 1 0 164 9 0 13 chain 20087 chr16 90338345 + 46441801 46442112 THE1B 368 + 6 341 56273 38 0 15 110 1 0 29 42 52 91 chain 464932 chr16 90338345 + 46489860 46495079 L1PA4 6152 + 6 5226 3995 940 1 0 84 1 0 206 0 1 585 0 1 822 0 1 1595 1 0 110 0 4 223 1 0 57 1 0 403 1 0 188 chain 555059 chr16 90338345 + 46535356 46541495 L1PA3long 6157 + 6 6144 403 2864 8 6 2107 0 1 432 5 6 402 1 0 184 1 0 6 0 1 129 chain 71475 chr16 90338345 + 46554267 46555216 LTR13 1007 + 0 1007 23658 73 6 7 99 8 42 160 4 5 109 9 17 89 0 1 88 1 0 8 1 10 107 0 1 92 0 5 62 2 1 31 chain 269518 chr16 90338345 + 46587611 46590694 L1PA5 6144 + 2426 5511 7721 40 1 2 368 6 1 413 2 0 440 0 1 376 3 1 423 0 4 132 0 1 340 0 2 102 1 3 436 chain 461712 chr16 90338345 + 46641007 46646992 L1PA7 6471 + 816 6470 4091 278 1 0 101 11 0 48 2 1 23 0 1 83 6 5 29 7 4 8 0 3 122 6 0 282 1 2 248 7 9 397 0 1 4 9 8 43 7 9 107 18 0 51 310 0 417 0 4 445 0 4 764 0 1 112 0 7 48 0 1 78 2 1 217 0 1 165 5 1 34 8 9 201 0 3 71 0 2 67 0 3 136 5 7 55 0 1 81 42 30 56 1 0 32 1 0 733 chain 16450 chr16 90338345 + 46673836 46674057 MER30 238 + 0 238 60448 98 10 0 12 1 28 100 chain 3003 chr16 90338345 + 46690474 46690508 MER5A 189 + 0 34 99809 34 chain 27879 chr16 90338345 + 46701729 46702101 MLT2A1 477 + 1 385 45064 50 0 1 54 0 2 12 3 7 15 8 9 18 1 5 211 chain 6915 chr16 90338345 + 46852423 46852510 LTR8 732 + 0 87 77906 87 chain 13984 chr16 90338345 + 46937024 46937206 MER41B 635 + 0 183 63623 128 1 2 53 chain 161559 chr16 90338345 + 46999447 47001291 SVA_D 2077 + 16 2065 11640 38 0 8 729 0 1 86 0 183 32 1 0 118 49 0 137 0 61 342 1 0 169 2 5 140 chain 4310 chr16 90338345 + 47000451 47000500 SVA_D 2077 + 1338 1436 48321 35 1 50 13 chain 9153 chr16 90338345 + 47013321 47013521 MER58A 224 + 6 208 72226 72 51 52 25 12 13 40 chain 21003 chr16 90338345 + 47084751 47085038 MER1A 529 + 241 529 55114 161 0 6 50 21 16 55 chain 529633 chr16 90338345 + 47096742 47103450 L1PA7 6471 + 3 6470 1844 233 9 23 105 0 1 38 0 1 1696 0 1 48 288 0 11 0 4 325 1 0 31 0 2 133 0 1 88 0 3 18 2 0 71 1 0 58 0 1 370 0 2 174 0 2 41 11 15 427 0 1 75 0 1 158 0 17 409 1 0 84 0 4 254 1 0 43 0 1 70 8 7 235 9 4 172 0 1 152 5 0 108 0 1 161 19 21 379 4 0 65 0 7 100 3 0 14 chain 40080 chr16 90338345 + 47152473 47152992 MER9a2 513 + 0 513 34603 258 0 19 9 32 0 97 0 1 31 0 2 28 0 4 64 chain 18974 chr16 90338345 + 47165967 47166221 MER4B 649 + 64 316 57577 122 8 6 124 chain 31060 chr16 90338345 + 47167256 47167745 LTR7 482 + 0 482 41082 86 50 0 13 17 16 96 9 50 54 0 1 103 12 14 49 chain 145618 chr16 90338345 + 47180352 47182196 SVA_D 2077 + 4 2077 12645 514 116 0 193 0 40 115 26 2 10 0 83 72 3 5 10 1 0 45 1 0 4 1 0 6 0 78 49 2 177 38 2 0 4 1 0 27 4 0 330 0 1 270 chain 3001 chr16 90338345 + 47180924 47180982 SVA_D 2077 + 616 674 71326 58 chain 536839 chr16 90338345 + 47182757 47188772 L1PA3long 6157 + 0 6149 1516 129 1 15 10 13 0 173 0 1 15 11 0 374 7 0 59 0 128 488 1 13 5 3 0 1189 0 1 96 0 1 47 0 15 44 0 1 231 0 2 2966 7 0 146 chain 15280 chr16 90338345 + 47191297 47191510 MER30 238 + 4 232 61943 109 2 20 66 8 5 28 chain 4705 chr16 90338345 + 47196618 47196674 MER4D 903 + 138 194 87233 56 chain 5927 chr16 90338345 + 47200130 47200202 Tigger3b 1229 + 1086 1158 81373 72 chain 2912 chr16 90338345 + 47220211 47220308 Charlie1a 1436 + 1 94 100740 13 17 14 11 24 23 32 chain 45477 chr16 90338345 + 47222918 47223409 L1PA3long 6157 + 4829 5320 31319 491 chain 73286 chr16 90338345 + 47223409 47224223 L1PA3long 6157 + 5341 6156 23264 672 0 2 137 1 0 4 chain 14048 chr16 90338345 + 47229930 47230151 MER44A 345 + 123 345 63521 64 3 0 65 8 11 51 10 11 20 chain 21593 chr16 90338345 + 47234756 47235112 THE1C 375 + 0 375 54370 134 1 5 34 61 76 126 chain 3234 chr16 90338345 + 47258177 47258228 L1MC4 1079 + 644 692 97624 32 4 1 15 chain 6740 chr16 90338345 + 47283861 47284064 L1MB8 1703 + 1378 1578 78510 43 1 0 13 38 37 32 50 49 26 chain 9467 chr16 90338345 + 47302440 47302544 LTR12C 1709 + 0 104 71569 104 chain 350197 chr16 90338345 + 47324144 47328071 L1PA4 6152 + 1794 5741 5908 519 0 2 21 1 2 255 0 1 270 0 9 216 0 1 682 0 1 1658 0 1 96 0 2 145 0 2 64 chain 507679 chr16 90338345 + 47347068 47353036 L1PA4 6152 + 10 5968 2862 810 33 16 478 1 2 893 0 1 684 5 1 194 0 1 74 0 1 16 1 0 704 0 1 4 6 9 886 0 1 90 0 2 164 0 1 406 0 1 436 1 0 82 chain 38206 chr16 90338345 + 47388689 47389168 HERV1_LTRc 486 + 0 486 35903 92 2 3 239 7 6 38 0 1 50 5 0 31 0 11 15 chain 14535 chr16 90338345 + 47403909 47404148 MER1A 529 + 285 524 62863 117 3 0 51 16 18 14 15 16 23 chain 35827 chr16 90338345 + 47433990 47434619 L1PA11 4918 + 3952 4567 37513 90 1 0 9 1 2 46 6 0 8 0 6 29 7 8 19 0 1 124 6 10 27 6 5 52 7 6 11 2 1 68 2 0 13 2 1 19 22 13 10 13 9 15 1 0 13 chain 468142 chr16 90338345 + 47437710 47443112 L1PA4 6152 + 0 5355 3904 127 0 14 387 4 0 263 0 1 2525 2 10 1331 70 0 646 0 4 47 chain 76409 chr16 90338345 + 47539657 47540683 MER11A 1151 + 0 1151 22460 55 0 99 66 13 12 62 4 0 30 0 2 114 5 6 91 0 1 21 1 0 125 18 10 114 0 1 12 5 38 56 0 1 51 0 1 117 1 0 23 0 1 42 chain 16098 chr16 90338345 + 47552538 47552732 AluSg7 307 + 10 205 60896 121 0 1 73 chain 124090 chr16 90338345 + 47557029 47558392 L1PA3long 6157 + 4792 6157 14829 1188 0 2 175 chain 133300 chr16 90338345 + 47628672 47630172 L1PA3long 6157 + 4645 6145 13715 1357 26 26 117 chain 79139 chr16 90338345 + 47645702 47646543 L1HS 6032 + 5191 6032 21828 841 chain 65738 chr16 90338345 + 47654212 47654964 L1PA5 6144 + 5394 6144 25020 637 1 0 84 4 3 26 chain 69384 chr16 90338345 + 47701920 47702759 L1PA10 4194 + 3329 4161 24145 99 5 6 255 3 0 281 0 1 111 2 0 34 3 0 34 1 0 11 chain 9664 chr16 90338345 + 47716543 47716661 MER49 923 + 166 284 71132 118 chain 86131 chr16 90338345 + 47759546 47760497 L1PA5 6144 + 5011 5962 20409 951 chain 22679 chr16 90338345 + 47761796 47762367 L1PA17 2846 + 2299 2693 52854 88 184 6 8 0 13 54 7 9 25 9 5 9 1 0 4 3 0 12 2 1 56 2 0 8 4 3 32 1 0 17 1 0 44 chain 207884 chr16 90338345 + 47767649 47770157 L1P2 5180 + 2 3232 9427 86 0 729 173 7 5 415 0 1 904 9 4 641 6 7 222 1 0 15 1 0 28 chain 89667 chr16 90338345 + 47800424 47801927 L1PA11 4918 + 3326 4567 19733 339 0 1 30 277 37 183 1 0 412 1 0 67 1 0 12 2 0 68 3 1 12 2 1 20 21 11 10 14 10 12 3 2 13 chain 281482 chr16 90338345 + 47839162 47842811 HERVH-int 3825 + 0 3825 7387 5 0 1 356 6 18 93 0 4 13 2 0 68 0 208 13 2 1 327 0 1 78 8 1 42 16 1 200 9 0 377 7 22 579 0 1 5 5 4 618 0 1 49 0 3 37 23 8 69 31 5 413 1 7 197 chain 30125 chr16 90338345 + 47859576 47859972 MLT2A1 477 + 2 401 41919 140 0 1 26 0 4 51 0 1 95 8 7 68 2 0 6 chain 75982 chr16 90338345 + 47864458 47865426 LTR5_Hs 974 + 0 974 22584 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 21429 chr16 90338345 + 47867805 47868148 Tigger4b 360 + 1 360 54605 19 2 9 12 0 3 7 3 0 6 18 11 52 0 11 82 0 2 82 5 0 10 1 8 5 0 1 39 chain 24474 chr16 90338345 + 47882904 47883379 L1PB1 5432 + 4988 5420 50072 98 0 5 12 1 2 9 17 0 24 1 0 8 1 0 12 4 0 11 3 1 50 2 1 16 1 0 36 8 7 12 18 5 30 31 26 17 1 0 21 1 0 13 1 0 16 chain 508423 chr16 90338345 + 47896853 47903255 L1PA6 6164 + 4 6154 2824 192 0 1 41 0 2 278 0 2 49 1 0 1627 0 2 128 3 4 239 1 2 226 0 4 359 0 6 13 5 0 8 5 4 79 0 1 35 279 0 322 1 2 70 4 6 839 1 0 175 9 16 315 0 1 263 0 3 147 6 3 20 0 3 522 3 4 137 chain 531351 chr16 90338345 + 47909908 47915992 L1PA5 6144 + 14 6132 1779 106 0 14 146 0 1 187 0 4 1543 0 1 365 0 4 135 0 3 1822 0 4 943 0 3 596 1 0 90 9 10 141 chain 62747 chr16 90338345 + 47950708 47951500 LTR12 884 + 0 884 25696 277 0 90 9 2 0 74 1 2 340 0 3 89 chain 3783 chr16 90338345 + 48060790 48060834 U5 65 + 0 44 92965 44 chain 23762 chr16 90338345 + 48067101 48067469 THE1B 368 + 0 366 51176 169 1 0 22 2 4 5 3 0 10 0 4 14 24 21 57 7 6 54 chain 2643 chr16 90338345 + 48139682 48139736 MLT1J 494 + 87 141 102765 5 0 1 24 12 11 13 chain 15641 chr16 90338345 + 48143534 48143824 THE1B 368 + 7 306 61481 101 12 13 17 0 4 27 1 0 5 24 31 4 1 0 4 0 1 10 10 9 9 2 1 63 chain 4616 chr16 90338345 + 48144217 48144289 MER63D 473 + 4 83 87719 16 2 11 7 2 0 45 chain 10550 chr16 90338345 + 48152979 48153106 MER50 708 + 473 601 69321 30 0 1 97 chain 28399 chr16 90338345 + 48168702 48169055 L1PA8 5853 + 5506 5852 44272 58 2 1 43 2 0 71 1 0 12 1 0 53 1 0 16 1 0 92 chain 34967 chr16 90338345 + 48169540 48169926 L1PA5 6144 + 5758 6144 38040 386 chain 9626 chr16 90338345 + 48236925 48237049 MER85 139 + 6 139 71206 83 0 10 11 1 0 29 chain 48277 chr16 90338345 + 48239081 48240091 L1PA11 4918 + 3867 4564 30190 167 0 8 32 306 4 29 5 6 149 0 8 54 14 4 65 2 1 78 2 0 17 1 0 19 4 0 9 31 22 15 1 0 10 chain 2596 chr16 90338345 + 48240683 48240739 MADE1 96 - 0 96 103025 12 0 41 14 1 0 29 chain 148011 chr16 90338345 + 48241371 48243061 L1PA5 6144 + 4459 6144 12480 1218 0 2 5 2 0 307 1 0 5 4 0 148 chain 16257 chr16 90338345 + 48308096 48308305 L1PB4 2604 + 1342 1551 60671 141 0 1 54 1 0 13 chain 8399 chr16 90338345 + 48322169 48322298 MER85 139 + 0 139 73902 96 21 31 12 chain 3435 chr16 90338345 + 48396578 48396616 MER58B 340 + 293 331 95781 38 chain 3931 chr16 90338345 + 48461839 48461886 MER44D 709 + 63 110 91901 47 chain 54050 chr16 90338345 + 48473778 48474383 L1PA5 6144 + 4259 4872 28210 399 2 0 170 0 10 34 chain 108070 chr16 90338345 + 48508519 48509840 LTR12C 1709 + 0 1709 17315 190 4 0 92 0 17 165 0 2 293 1 0 41 2 318 106 11 4 162 1 0 4 0 1 13 4 8 17 0 58 20 0 4 25 1 0 169 chain 6213 chr16 90338345 + 48622374 48622464 MER50B 698 + 482 567 80310 24 9 4 57 chain 20318 chr16 90338345 + 48680180 48680430 L1PA7 6471 + 6217 6467 55991 96 0 1 120 1 0 33 chain 83516 chr16 90338345 + 48722281 48723271 L1P1 4361 + 3303 4305 20911 469 0 1 81 0 11 283 1 0 138 0 1 18 chain 137974 chr16 90338345 + 48723619 48725287 L1PA6 6164 + 4315 6162 13270 157 1 8 820 9 6 290 6 15 208 7 8 41 0 165 129 chain 505952 chr16 90338345 + 48758691 48764867 L1PA6 6164 + 0 6160 2932 249 44 14 30 0 1 118 0 1 96 2 1 736 17 17 505 0 1 350 0 3 41 0 6 11 1 0 145 0 1 233 1 0 623 9 11 28 5 4 14 2 1 290 2 0 329 0 1 108 20 0 47 1 22 1315 0 2 125 0 3 349 0 1 107 5 6 205 3 0 10 chain 6442 chr16 90338345 + 48809195 48809377 L1MC1 2226 + 1992 2149 79538 53 53 41 17 3 1 18 17 7 6 1 0 14 chain 18518 chr16 90338345 + 48827732 48827988 L1PB2 3958 + 3587 3838 58084 30 1 0 64 1 0 72 2 0 21 2 1 63 chain 6474 chr16 90338345 + 48873578 48873665 L1PA17 2846 + 2608 2693 79426 24 1 0 17 1 0 44 chain 144352 chr16 90338345 + 48951090 48952754 SVA_D 2077 + 0 2073 12745 37 0 18 146 0 11 626 0 123 32 7 6 22 0 178 30 0 79 538 0 1 226 chain 537806 chr16 90338345 + 49028691 49034845 L1PA5 6144 + 0 6144 1462 324 1 5 483 17 0 705 1 0 1317 0 1 341 1 0 325 2 1 180 1 0 430 0 1 231 0 4 464 13 14 1318 chain 16477 chr16 90338345 + 49091640 49091908 L1PA17 2846 + 2437 2693 60407 65 4 0 15 11 6 12 1 0 57 2 0 8 1 0 32 1 0 7 0 3 7 1 0 44 chain 56435 chr16 90338345 + 49153195 49153838 L1PA5 6144 + 5462 6135 27443 46 0 30 597 chain 514657 chr16 90338345 + 49228103 49234179 L1PA5 6144 + 0 6087 2533 135 6 20 172 0 1 201 0 1 20 0 5 473 1 2 4 1 0 135 9 0 257 2 1 2081 0 1 163 14 13 943 1 0 1005 0 1 348 7 0 19 0 7 79 chain 48684 chr16 90338345 + 49264485 49265251 L1PB1 5432 + 4685 5420 30057 13 0 1 9 0 1 265 0 1 125 16 14 20 1 0 12 1 0 12 5 1 9 2 0 52 2 1 16 1 0 43 1 0 15 15 2 30 7 4 15 2 0 24 1 0 21 1 0 13 1 0 16 chain 5341 chr16 90338345 + 49343367 49343471 MLT1F 544 + 131 237 83998 21 28 30 55 chain 30955 chr16 90338345 + 49367895 49368421 MER4D 903 + 146 681 41164 72 0 2 131 82 81 27 0 1 132 0 6 24 9 17 22 4 0 4 3 0 16 chain 3418 chr16 90338345 + 49369201 49369242 MER4D 903 + 159 200 95916 41 chain 43298 chr16 90338345 + 49379799 49380324 MLT2A2 560 + 0 539 32574 194 1 4 204 0 11 126 chain 88749 chr16 90338345 + 49381439 49382418 L1PA3long 6157 + 5171 6151 19901 135 0 1 844 chain 23284 chr16 90338345 + 49616178 49616624 L1MA3 4352 + 3937 4322 51954 154 61 36 103 4 0 30 2 0 22 1 0 6 1 0 11 38 10 13 chain 2947 chr16 90338345 + 49771146 49771177 THE1B 368 + 13 44 100428 31 chain 2615 chr16 90338345 + 49955817 49955847 MER58D 378 + 326 356 102908 30 chain 4761 chr16 90338345 + 49988625 49988680 MER107 203 + 15 70 86909 55 chain 7269 chr16 90338345 + 49989296 49989464 L1MB2 1706 + 1536 1694 76770 30 47 36 9 1 0 16 10 12 55 chain 5960 chr16 90338345 + 49997481 49997820 MLT1B 390 + 21 352 81230 29 244 237 13 1 0 52 chain 14285 chr16 90338345 + 50017667 50017861 MER1B 344 + 113 304 63211 103 4 0 55 4 5 28 chain 9898 chr16 90338345 + 50018281 50018482 L1PB1 5432 + 5241 5422 70618 39 1 0 16 22 12 18 3 1 5 1 0 14 2 0 24 1 0 22 4 3 9 1 0 14 1 0 4 chain 25520 chr16 90338345 + 50027234 50027526 AluY 311 + 7 301 48451 118 0 2 174 chain 4042 chr16 90338345 + 50069833 50069886 MIR 256 + 134 185 91138 16 2 0 35 chain 7785 chr16 90338345 + 50098264 50098355 HY4 93 + 1 93 75404 73 0 1 18 chain 28138 chr16 90338345 + 50116448 50116827 L1MA5A 2387 + 998 1372 44657 39 2 0 265 10 6 20 0 1 43 chain 7073 chr16 90338345 + 50143793 50143881 Tigger2b_Pri 1066 + 173 261 77361 88 chain 3715 chr16 90338345 + 50257352 50257426 L1MA7 2200 + 2011 2079 93498 20 4 10 9 12 0 29 chain 521361 chr16 90338345 + 50343339 50349401 L1PA5 6144 + 0 6144 2209 120 0 14 187 0 3 178 1 40 315 0 4 308 9 0 577 1 0 1430 1 0 64 0 4 240 0 7 537 5 6 1329 1 5 9 0 1 180 0 1 251 0 1 40 1 10 129 7 0 10 0 7 119 2 7 11 chain 6706 chr16 90338345 + 50359640 50359720 HY3 101 + 20 100 78621 80 chain 5949 chr16 90338345 + 50385250 50385388 LTR16C 481 + 179 326 81282 47 37 57 36 11 0 7 chain 44752 chr16 90338345 + 50494688 50495245 MER41A 554 + 0 554 31721 430 0 1 6 4 0 117 chain 5416 chr16 90338345 + 50604193 50604271 MIRc 230 + 51 129 83619 60 5 5 13 chain 4435 chr16 90338345 + 50964964 50965034 MER53 195 - 15 86 88698 43 5 6 22 chain 16204 chr16 90338345 + 51007390 51007585 L1PA14 3548 + 348 543 60742 195 chain 11366 chr16 90338345 + 51016789 51016924 L1PB4 2604 + 2391 2526 67977 135 chain 23219 chr16 90338345 + 51058803 51059321 L1PB1 5432 + 4971 5427 52056 128 47 15 19 1 0 13 1 0 11 8 4 6 2 0 53 2 1 10 2 5 45 7 6 11 58 42 8 2 0 22 1 0 21 1 0 13 1 0 18 2 0 5 chain 47690 chr16 90338345 + 51090697 51091246 L1PA5 6144 + 5597 6144 30402 214 2 1 73 1 0 259 chain 106984 chr16 90338345 + 51229904 51231278 L1PA8 5853 + 4473 5853 17436 537 2 0 339 3 15 200 1 0 46 2 0 130 2 1 19 1 0 5 0 1 87 chain 19955 chr16 90338345 + 51256346 51256596 L1PA16 3655 + 3313 3563 56453 250 chain 4807 chr16 90338345 + 51258736 51258824 MLT1B 390 + 278 369 86659 40 14 16 23 1 2 10 chain 516445 chr16 90338345 + 51329816 51335688 L1PA5 6144 + 0 5879 2448 1165 0 3 1211 0 4 793 1 0 784 0 1 783 1 0 230 0 1 904 chain 256686 chr16 90338345 + 51371583 51374410 L1PA3long 6157 + 3330 6156 8070 1427 1 0 1399 chain 5812 chr16 90338345 + 51400528 51400815 LTR43 600 + 189 460 81865 67 83 89 4 1 0 18 98 77 16 chain 518368 chr16 90338345 + 51516637 51522909 L1PA7 6471 + 5 6452 2346 172 0 149 74 0 3 9 4 1 122 3 10 74 6 7 236 1 0 1305 0 1 462 0 3 26 8 0 368 0 11 446 13 14 30 0 1 43 6 5 34 0 1 221 1 2 28 0 14 126 5 0 450 1 2 470 0 1 73 1 0 97 1 0 526 11 9 410 0 1 143 0 1 266 chain 21022 chr16 90338345 + 51528068 51528418 THE1B 368 + 0 356 55091 106 16 17 53 40 38 18 0 8 59 2 0 11 1 2 44 chain 3726 chr16 90338345 + 51570350 51570409 MER96B 391 + 270 327 93437 16 0 2 6 4 0 33 chain 3048 chr16 90338345 + 51681412 51681465 MER51A 677 + 199 343 99328 31 4 95 18 chain 28751 chr16 90338345 + 51704389 51704701 AluYa5 310 + 0 308 43706 126 4 0 182 chain 4423 chr16 90338345 + 51874093 51874159 L1PB1 5432 + 5360 5423 88773 10 1 0 21 1 0 13 1 0 19 chain 12183 chr16 90338345 + 51934519 51934666 MLT1B 390 + 231 378 66504 147 chain 45376 chr16 90338345 + 51997751 51998383 LTR12_ 688 + 0 657 31378 30 3 4 43 5 71 20 47 5 484 chain 255767 chr16 90338345 + 52017777 52020677 L1PA4 6152 + 3229 6146 8097 283 1 0 836 0 4 77 3 4 157 6 5 883 0 1 427 0 13 227 chain 54216 chr16 90338345 + 52087358 52088114 MER4E 760 + 0 760 28146 22 3 0 129 22 25 101 6 4 81 1 3 81 4 8 81 6 9 47 0 4 97 11 4 64 chain 64303 chr16 90338345 + 52174921 52175618 L1PA2 6032 + 5333 6030 25349 697 chain 5637 chr16 90338345 + 52255467 52255541 MADE1 96 + 0 90 82612 37 2 18 35 chain 6251 chr16 90338345 + 52269553 52269632 MER2 342 + 131 210 80171 79 chain 27891 chr16 90338345 + 52277474 52277801 L1PA7 6471 + 6140 6467 45048 327 chain 8216 chr16 90338345 + 52281846 52281968 MLT1B 390 + 272 386 74360 53 8 0 61 chain 34911 chr16 90338345 + 52324989 52325487 MLT2A2 560 + 15 560 38087 60 0 5 78 23 22 128 6 38 56 0 11 92 0 2 10 2 0 43 chain 524865 chr16 90338345 + 52333413 52339533 L1PA5 6144 + 0 6144 2057 120 1 15 14 20 6 644 3 0 81 0 2 1186 0 1 245 0 1 128 0 1 737 0 1 495 4 1 4 0 1 793 1 0 4 0 1 146 7 8 339 0 1 109 0 1 206 0 4 36 0 1 343 1 9 305 12 12 116 0 7 20 chain 5847 chr16 90338345 + 52426568 52426636 L1PB4 2604 + 2396 2464 81703 68 chain 7599 chr16 90338345 + 52521732 52521820 MER5A 189 + 31 119 75873 88 chain 3297 chr16 90338345 + 52584646 52584756 LTR33 499 + 382 491 97038 15 57 56 38 chain 26957 chr16 90338345 + 52601962 52602351 THE1D 372 + 0 372 46326 75 19 0 163 14 15 56 3 4 59 chain 4759 chr16 90338345 + 52731878 52732325 LTR12C 1709 + 773 1542 86916 52 157 29 16 197 647 25 chain 7150 chr16 90338345 + 52773489 52773623 L1PB1 5432 + 5226 5342 77100 10 1 0 45 1 0 15 3 0 9 2 1 4 9 0 18 3 0 14 chain 3562 chr16 90338345 + 52775914 52775953 MLT2A2 560 + 521 560 94738 39 chain 119515 chr16 90338345 + 52791148 52792667 THE1C-int 1605 + 1 1598 15604 12 4 5 109 4 58 108 0 11 141 0 7 307 6 0 174 0 10 22 0 1 577 0 1 5 3 2 47 chain 18629 chr16 90338345 + 52808580 52808853 L1PB2 3958 + 3568 3838 57966 49 6 5 52 9 8 93 2 1 62 chain 128288 chr16 90338345 + 52846419 52848433 L1PA7 6471 + 4764 6467 14246 54 0 4 475 2 1 216 425 117 72 1 0 68 2 6 229 6 0 269 0 1 4 12 7 11 13 14 155 chain 22416 chr16 90338345 + 52850491 52850859 THE1D 372 + 1 357 53248 74 19 0 22 7 8 6 1 0 77 6 5 13 18 20 12 0 6 113 chain 4352 chr16 90338345 + 52863383 52863454 MADE1 96 + 7 94 89159 17 9 25 45 chain 7286 chr16 90338345 + 52868572 52868779 LTR12 884 + 117 378 76715 22 11 0 12 1 67 32 1 0 26 1 42 18 21 4 12 31 7 19 chain 53062 chr16 90338345 + 52890113 52890813 L1MA3 4352 + 2982 3684 28549 205 18 15 150 0 5 32 1 0 12 1 2 281 chain 12907 chr16 90338345 + 52927358 52927528 L1PA8 5853 + 5642 5853 65240 37 1 0 9 1 0 7 2 46 19 1 0 93 chain 4427 chr16 90338345 + 52931825 52931876 MLT1J2 417 + 233 284 88754 51 chain 21278 chr16 90338345 + 52938520 52938851 THE1C 375 + 0 335 54794 58 57 60 49 0 1 167 chain 9193 chr16 90338345 + 52946932 52947031 L1PA8 5853 + 4896 4995 72134 99 chain 24494 chr16 90338345 + 52955517 52955876 MSTA 426 + 4 360 50030 24 0 1 71 14 15 26 15 11 54 3 2 152 chain 166873 chr16 90338345 + 52998430 53000318 L1PA5 6144 + 4254 6144 11279 215 3 7 43 2 0 775 0 1 4 2 1 844 chain 60480 chr16 90338345 + 53008023 53008984 L1PB1 5432 + 4486 5413 26241 88 0 3 51 4 1 74 0 2 301 0 1 96 1 2 9 3 0 24 2 1 8 1 0 4 0 1 6 5 1 8 2 0 53 2 1 10 11 10 40 7 0 15 1 0 4 45 32 14 2 0 24 1 0 17 5 4 13 1 0 9 chain 34800 chr16 90338345 + 53051369 53051761 L1PA5 6144 + 5734 6126 38160 392 chain 23237 chr16 90338345 + 53073524 53073869 THE1A 353 + 0 353 52025 13 2 0 35 0 1 45 1 0 12 27 28 141 0 9 69 chain 122760 chr16 90338345 + 53073869 53075436 THE1A-int 1579 + 0 1579 15067 175 0 1 92 2 1 459 16 16 186 0 1 14 0 1 132 14 20 19 13 17 445 chain 5697 chr16 90338345 + 53146440 53146513 L1MB2 1706 + 1617 1691 82356 16 0 1 57 chain 207564 chr16 90338345 + 53276853 53280669 L1PB1 5432 + 2561 5427 9439 227 7 8 34 3 0 305 0 8 80 12 16 100 13 0 4 1 0 19 7 6 118 0 4 243 2 3 226 6 5 197 1 5 136 919 0 277 3 0 16 15 21 10 8 5 199 10 12 206 3 2 50 9 4 7 1 0 24 1 0 8 1 0 10 20 15 41 1 0 6 2 1 12 2 5 38 13 14 8 3 0 3 11 0 28 2 0 5 20 17 21 1 0 21 1 0 13 1 0 18 2 0 5 chain 80772 chr16 90338345 + 53278600 53279513 L1PA5 6144 + 5221 6136 21387 72 1 5 587 1 0 110 1 0 141 chain 15583 chr16 90338345 + 53303101 53303310 MER30 238 + 0 238 61551 15 0 18 82 4 15 108 chain 545756 chr16 90338345 + 53396916 53402913 L1PA3long 6157 + 12 6157 986 126 0 15 623 0 128 1306 0 2 1880 5 9 1912 1 0 144 chain 12008 chr16 90338345 + 53412967 53413211 LTR12D 1347 + 584 751 66827 109 90 13 45 chain 34457 chr16 90338345 + 53419197 53419720 MER41B 635 + 0 522 38393 121 7 11 149 0 1 159 70 64 17 chain 41611 chr16 90338345 + 53430550 53431086 MER41C 542 + 0 542 33617 231 3 6 77 8 9 72 0 2 145 chain 6900 chr16 90338345 + 53515245 53515329 MLT1B 390 + 263 347 77955 84 chain 142769 chr16 90338345 + 53538578 53540246 SVA_D 2077 + 36 2059 12877 792 80 0 80 2 0 3 0 36 89 0 2 74 0 389 228 0 10 320 chain 3298 chr16 90338345 + 53539370 53539419 SVA_D 2077 + 1177 1313 88645 10 0 1 2 0 86 37 chain 14710 chr16 90338345 + 53545194 53545416 MER30 238 + 0 238 62664 15 7 25 68 4 0 8 9 10 96 0 1 15 chain 31594 chr16 90338345 + 53560082 53560494 MER48 407 + 0 407 40673 30 0 1 4 1 0 283 7 2 87 chain 37913 chr16 90338345 + 53569193 53570066 MER41A 554 + 0 554 36128 168 31 21 145 16 8 82 309 9 65 3 2 54 chain 42059 chr16 90338345 + 53582892 53583442 MLT2A2 560 + 0 556 33319 315 14 9 81 1 12 139 chain 96745 chr16 90338345 + 53624793 53626158 SVA_A 1864 + 19 1864 18687 75 0 11 423 1 42 33 25 27 20 3 0 13 9 7 11 3 0 17 58 490 11 3 0 25 5 1 15 29 25 55 31 44 500 chain 60156 chr16 90338345 + 53684055 53684751 L1PA4 6152 + 5453 6151 26328 526 23 24 85 0 1 62 chain 29392 chr16 90338345 + 53684782 53685176 L1PA11 4918 + 4090 4475 42747 66 0 1 171 8 0 60 0 1 4 9 7 6 1 0 69 chain 177081 chr16 90338345 + 53697322 53699404 SVA_D 2077 + 0 2077 10722 19 5 6 22 6 0 849 12 54 10 0 1 31 0 1 4 0 1 38 0 2 48 0 1 115 49 0 126 0 1 59 0 1 4 10 9 123 0 1 239 1 0 312 chain 3050 chr16 90338345 + 53698481 53698530 SVA_D 2077 + 1024 1075 30601 10 2 4 37 chain 32496 chr16 90338345 + 53919399 53919975 L1PB1 5432 + 4891 5423 39946 104 3 2 106 1 2 9 13 0 24 8 6 14 5 1 9 2 0 48 7 6 14 1 0 45 1 0 15 1 0 6 17 6 18 3 1 5 1 0 14 2 0 24 2 1 20 1 0 13 1 0 19 chain 24491 chr16 90338345 + 53989747 53990123 Tigger2 2703 + 2279 2651 50043 32 0 9 46 12 0 120 0 3 51 8 0 8 0 5 28 6 5 38 1 3 5 2 0 19 chain 24325 chr16 90338345 + 54018509 54018883 THE1C 375 + 0 375 50296 113 0 1 65 0 2 5 17 12 80 14 16 39 13 14 28 chain 566293 chr16 90338345 + 54042096 54048124 L1HS 6032 + 3 6031 56 6028 chain 102585 chr16 90338345 + 54157400 54158530 L1PA3long 6157 + 5028 6157 17997 356 1 0 773 chain 9238 chr16 90338345 + 54232332 54232539 L1PB4 2604 + 2251 2455 72037 35 46 48 15 10 11 19 6 0 76 chain 20801 chr16 90338345 + 54257617 54257936 THE1B 368 + 0 328 55356 169 1 0 17 47 57 85 chain 20598 chr16 90338345 + 54377466 54377869 MSTB 430 + 15 415 55634 67 8 9 33 49 47 30 5 1 42 11 10 13 10 11 13 1 0 24 4 7 93 chain 6028 chr16 90338345 + 54574048 54574267 MLT1B 390 + 149 371 80974 18 128 131 73 chain 67661 chr16 90338345 + 54580630 54581375 L1PA3long 6157 + 5412 6157 24532 745 chain 318544 chr16 90338345 + 54661370 54665244 L1P3 4156 + 6 3893 6431 219 0 15 9 29 13 57 2 1 459 0 2 1197 0 6 533 0 2 162 0 4 6 8 1 26 0 1 827 0 4 23 0 3 317 chain 207083 chr16 90338345 + 54666639 54669177 L1PA7 6471 + 3925 6468 9460 36 0 1 298 0 1 107 8 4 1230 0 4 7 16 13 204 0 1 304 1 3 74 0 1 243 0 2 10 chain 5334 chr16 90338345 + 54679653 54679714 MER20 218 + 21 82 84040 61 chain 21254 chr16 90338345 + 54721506 54721855 THE1B 368 + 0 355 54817 108 5 3 55 8 7 15 46 55 112 chain 54357 chr16 90338345 + 54782691 54783380 L1PA8 5853 + 4962 5640 28104 43 5 4 248 7 0 307 1 0 46 2 0 30 chain 2182 chr16 90338345 + 54830341 54830408 LTR12C 1709 + 751 854 105378 16 14 51 14 6 5 17 chain 11017 chr16 90338345 + 54830441 54830659 LTR12C 1709 + 650 1068 68530 96 41 0 44 20 261 17 chain 21199 chr16 90338345 + 54834172 54834470 AluSc8 310 + 10 308 54886 121 22 26 22 3 0 99 2 1 29 chain 2945 chr16 90338345 + 54871627 54871692 MADE1 96 + 0 96 100454 22 0 31 43 chain 28541 chr16 90338345 + 54892620 54892927 AluYk11 308 + 0 307 44050 307 chain 39417 chr16 90338345 + 55027113 55027696 L1PB2 3958 + 3063 3640 35064 179 0 1 66 15 13 39 1 0 78 19 13 39 1 2 46 9 10 4 0 1 63 1 0 23 chain 3596 chr16 90338345 + 55041725 55041803 MER58A 224 + 37 117 94467 12 0 1 25 23 24 18 chain 33587 chr16 90338345 + 55085257 55085695 L1PA8 5853 + 5422 5853 39013 142 1 0 46 3 1 12 0 1 55 1 0 8 2 1 15 1 0 37 2 1 19 1 0 93 chain 4505 chr16 90338345 + 55159740 55159821 MLT1C 463 + 376 459 88294 50 15 17 16 chain 13010 chr16 90338345 + 55348147 55348441 L1PB1 5432 + 5114 5384 65102 20 1 0 8 3 2 13 5 2 9 2 0 52 2 1 10 5 4 60 1 0 7 1 0 11 7 0 11 34 29 17 1 0 14 chain 2918 chr16 90338345 + 55412137 55412402 MLT1C 463 + 88 382 100685 18 0 1 7 211 239 29 chain 541118 chr16 90338345 + 55598799 55604803 L1PA3long 6157 + 0 6151 1271 152 0 1 109 0 16 498 0 128 1555 2 0 773 0 4 1676 1 0 443 1 2 794 chain 389985 chr16 90338345 + 55615964 55621111 L1PA5 6144 + 530 6137 5324 272 1 18 132 25 0 213 13 4 263 0 1 879 7 6 884 1 0 52 1 3 505 0 1 361 0 1 656 497 970 59 0 1 326 chain 17471 chr16 90338345 + 55671485 55671723 Charlie3 2679 + 20 257 59270 13 1 0 30 6 10 163 5 1 20 chain 4272 chr16 90338345 + 55724254 55724390 MER58A 224 + 68 218 89690 24 70 84 42 chain 4299 chr16 90338345 + 55753302 55753355 MLT1A 405 + 226 279 89504 53 chain 4299 chr16 90338345 + 55753662 55753715 MLT1A 405 + 226 279 89503 53 chain 63593 chr16 90338345 + 55804433 55805114 L1PA2 6032 + 5351 6032 25506 681 chain 27903 chr16 90338345 + 55855831 55856236 MSTA 426 + 15 426 45033 78 10 11 16 0 1 7 0 1 4 1 0 21 0 6 76 23 21 169 chain 23372 chr16 90338345 + 55859967 55860327 THE1B 368 + 2 368 51815 33 0 5 129 1 0 9 32 36 16 1 0 12 9 8 118 chain 41869 chr16 90338345 + 55890864 55891403 LTR10F 562 + 0 562 33445 192 0 28 11 3 0 158 9 11 98 8 4 60 chain 55941 chr16 90338345 + 55891776 55892493 MER4E1 777 + 66 769 27580 87 0 1 18 0 1 369 32 16 211 chain 3909 chr16 90338345 + 55899665 55899839 MER20 218 + 23 217 92058 33 114 134 27 chain 32474 chr16 90338345 + 55975404 55975793 L1PA7 6471 + 6071 6470 39963 227 1 11 161 chain 120189 chr16 90338345 + 55988470 55990152 SVA_A 1864 + 15 1648 15506 103 0 11 413 4 4 34 4 1 110 42 1 34 5 3 32 0 2 124 2 35 12 37 0 119 8 5 32 8 5 40 12 11 21 8 6 23 14 12 26 11 8 329 0 2 75 chain 2403 chr16 90338345 + 55989138 55989174 SVA_A 1864 + 765 802 36540 1 1 2 34 chain 2470 chr16 90338345 + 55989389 55989426 SVA_A 1864 + 1008 1045 36540 37 chain 26771 chr16 90338345 + 56050151 56050559 MER1A 529 + 41 519 46582 51 39 83 186 0 27 69 16 14 42 0 1 5 chain 15174 chr16 90338345 + 56145249 56145469 MER30 238 + 0 234 62066 100 2 0 5 4 23 71 4 1 34 chain 557986 chr16 90338345 + 56154514 56160659 L1PA3long 6157 + 4 6157 245 148 0 1 77 0 1 1215 0 1 2444 0 1 48 0 11 1276 1 0 6 0 1 651 7 0 272 chain 35819 chr16 90338345 + 56161158 56161590 MER57A1 433 + 0 433 37516 282 0 1 150 chain 53768 chr16 90338345 + 56175792 56176423 L1PA6 6164 + 5529 6162 28296 304 0 1 117 8 11 127 3 1 72 chain 2986 chr16 90338345 + 56198584 56198674 MIR 256 + 108 196 100000 30 3 0 6 34 35 17 chain 31459 chr16 90338345 + 56242831 56243350 MER1A 529 + 0 529 40769 25 26 40 8 11 0 6 0 7 6 1 5 352 5 0 8 41 42 30 chain 519979 chr16 90338345 + 56391235 56397507 L1PA5 6144 + 3 5963 2277 132 0 14 202 23 0 176 1 7 1425 0 2 233 0 4 978 1 0 42 318 0 1224 2 0 907 9 11 22 0 1 90 0 4 209 1 0 277 chain 5708 chr16 90338345 + 56445203 56445294 Tigger4a 237 + 90 189 82306 17 14 22 60 chain 5019 chr16 90338345 + 56456672 56456802 Tigger3a 397 + 139 276 85571 42 61 68 27 chain 74277 chr16 90338345 + 56579306 56580123 L1PA3long 6157 + 5342 6157 23006 482 2 0 333 chain 116122 chr16 90338345 + 56621653 56623137 THE1B-int 1605 + 54 1594 16208 371 9 33 5 0 1 55 1 0 161 1 2 196 0 7 39 0 14 61 0 1 18 1 3 162 0 7 404 chain 35080 chr16 90338345 + 56674815 56675252 LTR7 482 + 0 469 37966 224 12 13 27 0 31 174 chain 3324 chr16 90338345 + 56695901 56695981 MER52C 1267 + 941 1019 96824 20 14 0 12 14 26 20 chain 8829 chr16 90338345 + 56817769 56817958 Tigger3a 397 + 175 366 72920 83 68 70 38 chain 36039 chr16 90338345 + 56864422 56864885 LTR2 463 + 0 463 37394 362 12 13 15 2 1 72 chain 40160 chr16 90338345 + 56984582 56985147 LTR10A 586 + 0 565 34550 141 2 0 5 11 12 44 9 10 69 1 2 220 11 9 9 0 1 43 chain 26107 chr16 90338345 + 57160044 57160317 AluYb8 318 + 36 309 47563 273 chain 7899 chr16 90338345 + 57299950 57300033 tRNA-Leu-CTG 83 + 0 83 75112 83 chain 7093 chr16 90338345 + 57319116 57319200 L1PA8 5853 - 431 515 77287 84 chain 29960 chr16 90338345 + 57319200 57319602 L1PA8 5853 + 5457 5853 42091 107 1 0 46 2 0 61 9 8 61 2 1 19 2 1 92 chain 7371 chr16 90338345 + 57420866 57420954 L1MA4A 3247 + 3042 3129 76473 65 1 0 22 chain 27337 chr16 90338345 + 57423927 57424243 AluYb8 318 + 0 312 45780 26 1 0 37 2 0 60 1 0 189 chain 84875 chr16 90338345 + 57439561 57440596 MER11B 1079 + 7 1051 20644 530 0 1 4 6 5 22 0 1 200 2 4 32 0 5 68 0 1 171 chain 20761 chr16 90338345 + 57539969 57540227 AluSc 308 + 11 265 55420 53 7 3 198 chain 4014 chr16 90338345 + 57612217 57612266 MER63D 473 + 358 407 91354 49 chain 4760 chr16 90338345 + 57713591 57713650 THE1B 368 + 280 338 86911 28 1 0 30 chain 6929 chr16 90338345 + 57732637 57732724 MER20 218 + 91 178 77853 87 chain 7756 chr16 90338345 + 57777265 57777433 L1MB3 1562 + 8 204 75469 12 2 1 68 46 75 40 chain 6813 chr16 90338345 + 58074890 58075006 MLT1C-int 1263 + 15 128 78271 5 1 0 24 10 11 18 1 0 35 2 0 20 chain 128421 chr16 90338345 + 58089443 58090922 L1PA5 6144 + 4664 6144 14231 629 2 1 517 0 1 177 8 9 146 chain 8450 chr16 90338345 + 58208506 58208612 MER1B 344 + 216 339 73796 58 0 17 48 chain 4681 chr16 90338345 + 58220521 58220592 HAL1 992 + 509 581 87375 34 6 7 31 chain 30834 chr16 90338345 + 58307594 58307993 MER4B 649 + 0 420 41281 47 0 15 77 8 10 137 0 3 24 4 5 102 chain 26494 chr16 90338345 + 58316368 58316730 MER4B 649 + 0 353 46990 112 1 0 4 0 1 8 15 7 104 0 4 48 5 0 65 chain 26067 chr16 90338345 + 58421146 58421503 THE1C 375 + 16 375 47633 52 0 14 9 14 0 60 1 2 32 1 2 188 chain 46789 chr16 90338345 + 58441711 58442276 LTR19B 566 + 0 566 30733 513 0 1 52 chain 4160 chr16 90338345 + 58599568 58599617 HY3 101 + 0 49 90387 49 chain 25205 chr16 90338345 + 58604499 58604845 AluSp 311 + 0 309 48937 120 16 0 161 19 0 11 2 0 17 chain 25062 chr16 90338345 + 58608572 58609089 L1PB1 5432 + 4921 5391 49180 37 1 0 28 0 3 5 6 3 17 1 5 31 1 2 51 1 2 10 6 1 22 1 0 9 1 0 10 5 1 11 5 3 48 2 1 15 1 0 41 51 20 30 2 0 5 1 0 14 2 0 26 1 0 19 chain 20723 chr16 90338345 + 58636079 58636395 L1PA8 5853 + 5506 5815 55466 14 3 2 42 1 0 38 8 6 70 2 1 9 1 0 6 0 1 45 2 1 19 2 1 54 chain 22295 chr16 90338345 + 58701072 58701398 THE1D 372 + 0 338 53416 72 0 10 84 25 27 62 1 0 17 1 2 64 chain 21456 chr16 90338345 + 58714278 58714568 AluYa5 310 + 10 298 54576 43 50 48 197 chain 50369 chr16 90338345 + 58736125 58736716 LTR10C 591 + 0 591 29424 591 chain 11834 chr16 90338345 + 58749335 58749898 LTR12C 1709 + 940 1453 67140 136 390 339 25 1 2 11 chain 4770 chr16 90338345 + 58829903 58829999 MER44A 345 + 144 264 86859 33 0 1 7 1 20 10 11 16 16 1 0 17 chain 46133 chr16 90338345 + 58839204 58839695 L1HS 6032 + 5541 6032 30993 491 chain 36809 chr16 90338345 + 58896486 58896918 L1PA6 6164 + 5718 6150 36876 432 chain 25238 chr16 90338345 + 58926542 58926912 THE1B 368 + 0 368 48888 81 4 5 83 1 0 29 0 3 5 5 9 15 1 0 10 1 0 52 12 5 71 chain 7155 chr16 90338345 + 58937076 58937216 MER2 342 + 136 295 77081 10 1 0 70 22 43 19 5 4 13 chain 24799 chr16 90338345 + 58964230 58964526 L1PA7 6471 + 6157 6453 49592 150 2 0 5 0 2 139 chain 72613 chr16 90338345 + 58964569 58965391 L1PA5 6144 + 5318 6140 23396 822 chain 36063 chr16 90338345 + 58995245 58995857 L1PB1 5432 + 4792 5398 37375 92 0 4 215 1 2 9 1 0 24 1 0 6 1 0 12 8 4 8 2 0 52 2 1 15 1 0 22 69 74 14 2 0 24 1 0 8 1 0 14 1 0 6 chain 9389 chr16 90338345 + 59016881 59016990 MER85 139 + 0 119 71727 89 0 10 20 chain 541428 chr16 90338345 + 59072258 59078390 L1PA4 6152 + 2 6139 1242 567 1 0 377 0 4 609 0 2 798 0 1 811 1 0 2968 chain 481019 chr16 90338345 + 59096419 59101904 L1PA4 6152 + 0 5514 3608 484 1 2 363 1 4 6 3 0 14 0 2 465 0 1 81 0 3 422 0 5 1283 0 5 110 0 4 415 0 1 270 0 1 403 0 4 884 4 1 71 0 4 166 0 1 39 chain 7194 chr16 90338345 + 59152218 59152299 MER50 708 + 2 83 76962 81 chain 22838 chr16 90338345 + 59216954 59217327 L1PA16 3655 + 3236 3578 52606 42 1 0 12 2 0 62 4 0 12 55 30 62 0 1 121 chain 384872 chr16 90338345 + 59229675 59234224 L1PA5 6144 + 4 6144 5400 131 10 24 308 0 1 698 12 3 884 0 2 280 0 11 818 1 0 6 2 0 38 1 14 167 0 1554 32 0 1 509 0 3 24 0 1 476 1 2 139 1 3 11 chain 7549 chr16 90338345 + 59286197 59286305 L1MA4A 3247 + 3022 3128 76001 16 1 0 67 2 1 22 chain 29158 chr16 90338345 + 59316793 59317368 L1PB1 5432 + 4942 5392 43110 161 101 4 7 1 0 24 1 0 9 1 0 10 6 2 9 2 0 52 0 2 14 1 0 44 1 0 16 3 0 6 16 6 19 2 0 5 21 18 20 1 0 22 chain 7023 chr16 90338345 + 59331796 59331912 LOR1b 457 + 42 174 77513 17 17 35 49 2 0 31 chain 13019 chr16 90338345 + 59354958 59355170 MSTC 436 + 212 429 65090 6 6 0 21 23 34 156 chain 21670 chr16 90338345 + 59361745 59362111 THE1B 368 + 0 368 54266 113 7 6 43 66 74 6 4 0 66 1 0 60 chain 231293 chr16 90338345 + 59363209 59365889 L1P1 4361 + 2 2674 8714 572 10 9 119 12 5 1967 chain 156852 chr16 90338345 + 59408539 59410293 L1PA4 6152 + 3432 5188 11951 346 0 1 850 1 2 557 chain 76869 chr16 90338345 + 59443506 59444365 L1PA5 6144 + 4761 5618 22355 108 1 0 425 2 0 88 0 1 235 chain 77226 chr16 90338345 + 59512036 59512872 L1PA2 6032 + 5190 6026 22258 836 chain 20241 chr16 90338345 + 59539589 59540003 L1PA15 4387 + 3952 4351 56090 132 12 0 8 1 12 27 1 0 49 12 5 19 13 16 21 32 29 44 25 19 18 chain 17599 chr16 90338345 + 59655925 59656119 L1PA4 6152 + 5957 6151 59123 194 chain 7872 chr16 90338345 + 59731354 59731443 5S 121 + 0 90 75191 29 0 1 60 chain 19942 chr16 90338345 + 59734451 59734731 THE1D 372 + 75 372 56466 53 0 4 30 22 35 175 chain 339457 chr16 90338345 + 59761051 59765308 L1PA7 6471 + 2166 6467 6082 354 0 2 9 0 1 109 20 0 134 0 5 747 4 0 17 0 4 193 0 20 165 1 2 80 30 14 16 0 6 234 2 1 166 1 5 137 1 2 31 2 1 47 0 6 549 3 0 120 0 12 266 5 8 495 7 8 25 0 25 279 2 0 6 chain 76321 chr16 90338345 + 59799478 59800646 L1PB 1623 + 424 1583 22483 61 1 0 94 10 12 119 19 41 105 5 14 72 16 16 351 6 0 137 1 0 7 2 1 30 8 4 13 6 2 12 1 0 6 54 32 22 2 0 8 chain 512622 chr16 90338345 + 59809339 59815489 L1PA6 6164 + 18 6151 2638 449 1 0 340 3 15 64 1 16 121 2 1 48 1 0 182 1 0 169 10 5 7 0 5 370 0 2 418 3 4 95 8 0 129 1 0 203 0 9 519 0 1 74 0 3 187 0 1 118 1 0 4 0 1 1233 60 0 269 0 1 86 0 5 146 0 4 121 0 1 420 0 1 286 chain 31588 chr16 90338345 + 59828883 59829239 L1PA5 6144 + 5782 6138 40679 356 chain 9692 chr16 90338345 + 59855888 59856544 LTR49 580 + 0 580 71068 49 33 60 25 0 1 4 465 361 80 chain 33170 chr16 90338345 + 59890505 59891040 MLT2A2 560 + 0 560 39385 74 1 0 129 2 1 17 33 0 13 17 63 60 1 2 43 1 12 19 17 19 108 chain 21786 chr16 90338345 + 59902398 59902634 L1PA5 6144 + 5898 6134 54111 236 chain 549332 chr16 90338345 + 59976601 59982619 L1PA2 6032 + 0 6026 792 1275 1 10 4491 1 0 250 chain 40675 chr16 90338345 + 60078534 60078985 LTR7 482 + 0 482 34165 264 0 31 187 chain 297144 chr16 90338345 + 60078987 60082868 HERVH-int 3825 + 0 3825 6917 527 53 0 4 135 0 39 2 1 9 1 0 9 1 0 14 7 1 14 1 0 13 3 0 14 81 15 60 21 0 9 2 1 49 1 0 36 0 1 413 16 1 211 0 1 239 8 35 290 0 4 65 0 1 1044 12 222 250 3 8 225 chain 40889 chr16 90338345 + 60084127 60084578 LTR7 482 + 0 482 34033 267 0 31 184 chain 155634 chr16 90338345 + 60147685 60149676 L1PA7 6471 + 4457 6457 12029 30 0 1 336 2 1 38 0 3 392 4 0 239 28 16 108 3 0 79 2 3 87 10 8 42 0 1 53 0 11 380 9 25 11 2 0 97 0 9 8 9 0 22 chain 4889 chr16 90338345 + 60149781 60149842 Tigger2 2703 + 2557 2618 86210 61 chain 23685 chr16 90338345 + 60159451 60159749 AluSp 311 + 10 311 51296 70 2 0 9 0 8 35 3 0 179 chain 28794 chr16 90338345 + 60164087 60164424 L1PA5 6144 + 5810 6143 43636 277 4 0 56 chain 25684 chr16 90338345 + 60174610 60175014 MSTA 426 + 0 408 48193 28 0 1 102 1 0 71 1 2 4 4 0 30 27 26 30 15 23 91 chain 4082 chr16 90338345 + 60179119 60179229 MLT1F 544 + 307 418 90887 31 33 0 8 13 47 25 chain 2906 chr16 90338345 + 60193354 60193387 LTR48 738 + 353 386 100791 33 chain 25782 chr16 90338345 + 60200729 60201122 LTR7 482 + 0 475 48046 101 0 50 7 9 9 49 13 45 16 20 19 9 1 2 168 chain 43828 chr16 90338345 + 60202698 60203251 MER41A 554 + 0 554 32231 198 1 0 4 0 1 259 21 22 70 chain 4575 chr16 90338345 + 60209665 60209751 LTR48B 642 + 529 612 87944 14 6 4 39 5 4 22 chain 67775 chr16 90338345 + 60293100 60293847 L1PA3long 6157 + 4296 5047 24502 66 0 4 681 chain 39959 chr16 90338345 + 60332328 60332864 LTR12 884 + 0 873 34690 24 1 0 29 0 39 179 0 67 40 2 0 66 4 1 70 0 1 45 0 236 76 chain 3215 chr16 90338345 + 60382462 60382597 L1MC4 1079 + 76 235 97754 22 87 111 26 chain 552397 chr16 90338345 + 60522745 60528760 L1PA2 6032 + 0 6021 587 320 13 7 384 7 0 2428 0 15 2028 0 4 835 chain 28896 chr16 90338345 + 60578717 60579109 LTR7B 505 + 0 497 43486 105 0 10 69 1 96 42 0 1 42 1 0 21 1 2 53 2 1 55 chain 71280 chr16 90338345 + 60584533 60585326 L1PA4 6152 + 4388 5185 23702 453 0 4 340 chain 161272 chr16 90338345 + 60595125 60597069 L1PA7 6471 + 4512 6461 11665 113 1 0 43 0 4 207 0 3 730 1 0 482 8 6 6 0 2 353 chain 22958 chr16 90338345 + 60627743 60628076 L1PA8 5853 + 5523 5850 52429 41 1 0 46 2 0 58 0 1 9 2 1 14 5 4 43 3 2 18 2 1 89 chain 41814 chr16 90338345 + 60636218 60636766 MER41A 554 + 0 546 33475 170 3 9 335 8 0 32 chain 41503 chr16 90338345 + 60687246 60687705 L1PA4 6152 + 5684 6143 33670 459 chain 14629 chr16 90338345 + 60708289 60708455 L1PA4 6152 + 3034 3200 62766 166 chain 4738 chr16 90338345 + 60775166 60775289 LTR8 732 + 485 609 87022 49 52 53 22 chain 9432 chr16 90338345 + 60796344 60796452 L1PA5 6144 + 6027 6135 71629 108 chain 126431 chr16 90338345 + 60799858 60801307 L1PA5 6144 + 4702 6144 14493 724 8 1 83 4 4 630 chain 9221 chr16 90338345 + 60805876 60805982 L1PA7 6471 + 6363 6469 72074 106 chain 64401 chr16 90338345 + 60830527 60831263 L1PA4 6152 + 5404 6141 25324 41 0 1 695 chain 74622 chr16 90338345 + 60843227 60844047 L1PA3long 6157 + 5336 6156 22930 820 chain 441123 chr16 90338345 + 60847513 60853181 HERVL-int 5654 + 1 5654 4552 139 1 0 141 0 6 150 2 1 166 0 1 50 3 1 292 1 2 1418 67 67 106 1 0 6 6 12 311 0 1 39 0 1 167 0 3 209 0 3 1446 0 12 360 26 3 29 0 3 43 7 6 29 18 5 147 0 23 20 1 0 2 32 0 233 chain 248785 chr16 90338345 + 60877333 60880008 L1HS 6032 + 3381 6032 8274 1421 24 0 1230 chain 24854 chr16 90338345 + 60896479 60896752 L1HS 6032 + 5756 6028 49512 262 1 0 10 chain 446379 chr16 90338345 + 60935971 60941164 L1PA4 6152 + 3 5246 4454 65 4 7 88 16 44 772 1 0 164 0 2 62 1 0 4 0 1 162 0 1 630 5 6 516 2 0 287 0 7 177 0 1 696 9 20 178 1 0 521 0 1 308 1 0 523 chain 89700 chr16 90338345 + 60941166 60942237 MER11C 1089 + 2 1073 19729 561 17 16 315 0 1 178 chain 45445 chr16 90338345 + 60981932 60982538 L1PA8 5853 + 5145 5853 31343 340 0 89 34 2 0 24 0 1 49 8 6 48 8 24 93 chain 4225 chr16 90338345 + 61035303 61035363 L1ME1 1623 + 1422 1476 89970 23 6 0 31 chain 31290 chr16 90338345 + 61041505 61041970 MLT2A1 477 + 0 463 40901 166 7 4 9 0 1 24 0 1 38 4 5 137 4 0 9 25 27 42 chain 30209 chr16 90338345 + 61064862 61065281 L1PA8 5853 + 5438 5853 41843 16 0 1 65 22 23 21 1 0 45 2 0 73 1 0 57 4 3 18 1 0 93 chain 519143 chr16 90338345 + 61090470 61096845 L1PA7 6471 + 0 6469 2307 413 7 7 603 1 8 35 2 0 183 0 6 209 1 0 131 3 6 25 1 0 409 17 13 54 0 2 205 0 20 15 0 1 299 0 42 246 1 0 146 0 1 163 4 5 158 0 1 18 0 1 97 13 9 78 0 10 259 1 0 542 1 0 67 0 1 145 2 1 172 2 0 24 1 0 129 6 0 4 0 6 15 0 1 222 0 1 12 0 1 162 0 1 239 0 5 75 0 1 122 0 6 488 0 1 148 chain 109611 chr16 90338345 + 61197894 61199473 THE1B-int 1605 + 0 1599 17112 33 0 2 326 66 1 64 0 25 12 6 8 48 1 0 93 7 59 161 0 8 116 6 1 34 53 54 131 11 12 411 chain 31843 chr16 90338345 + 61222031 61222394 L1PA5 6144 + 5780 6144 40459 190 0 1 173 chain 26862 chr16 90338345 + 61252940 61253306 THE1A 353 + 0 353 46456 109 2 1 54 18 6 183 chain 10602 chr16 90338345 + 61260900 61261043 L1PA7 6471 + 5898 6042 69226 124 8 9 11 chain 36301 chr16 90338345 + 61261043 61261463 L1PA7 6471 + 6044 6464 37214 420 chain 13136 chr16 90338345 + 61352759 61353061 L1PB1 5432 + 5105 5376 64871 12 3 0 21 37 29 53 2 1 16 1 0 44 39 27 19 3 1 4 1 0 14 2 0 24 1 0 6 chain 3185 chr16 90338345 + 61429090 61429125 MER3 215 + 134 169 98026 35 chain 3130 chr16 90338345 + 61441233 61441356 L1MCb 1641 + 879 1003 98542 15 60 61 23 0 3 5 3 0 17 chain 125514 chr16 90338345 + 61451324 61452846 L1PA7 6471 + 4949 6468 14627 36 1 0 313 0 1 32 5 6 262 0 1 14 0 3 380 9 0 287 0 1 183 chain 136140 chr16 90338345 + 61461603 61463108 L1PA3long 6157 + 4636 6142 13422 1218 0 1 287 chain 22195 chr16 90338345 + 61475181 61475446 L1PA7 6471 + 6195 6460 53566 265 chain 5005 chr16 90338345 + 61482443 61482506 L1PA7 6471 + 5691 5754 85638 63 chain 58513 chr16 90338345 + 61482506 61483204 L1PA7 6471 + 5759 6459 26813 528 0 1 54 0 1 116 chain 22980 chr16 90338345 + 61496374 61496757 L1PA8 5853 + 5395 5763 52390 75 6 0 51 2 0 5 12 11 27 1 0 46 3 1 69 23 21 39 2 1 22 chain 21345 chr16 90338345 + 61506098 61506352 SVA_A 1864 + 1602 1864 54708 104 12 20 138 chain 29057 chr16 90338345 + 61526177 61526498 L1P1 4361 + 2828 3149 43243 321 chain 28590 chr16 90338345 + 61604368 61604749 L1PA8 5853 + 5479 5853 43973 85 1 0 44 2 0 71 1 0 8 4 3 50 2 1 19 1 0 93 chain 81720 chr16 90338345 + 61635660 61636691 L1PA7 6471 + 5414 6456 21294 125 1 0 22 0 8 36 9 12 5 3 0 81 0 1 190 0 2 241 1 0 157 13 15 147 chain 24992 chr16 90338345 + 61665305 61665665 L1PA8 5853 + 5469 5849 49292 63 12 38 39 2 0 70 1 0 9 1 0 50 4 3 16 5 4 88 chain 38042 chr16 90338345 + 61675196 61675612 L1PA2 6032 + 5616 6032 36041 416 chain 558365 chr16 90338345 + 61782078 61788101 L1PA2 6032 + 3 6032 230 804 0 2 891 0 1 4172 0 3 156 chain 558904 chr16 90338345 + 61801455 61807489 L1PA2 6032 + 3 6032 202 2188 1 0 3770 4 0 71 chain 16443 chr16 90338345 + 61809352 61809593 L1PA8 5853 + 5608 5848 60457 56 0 3 8 23 21 43 3 2 19 2 1 87 chain 5709 chr16 90338345 + 61874780 61874860 MADE1 96 + 0 96 82297 27 1 17 52 chain 2654 chr16 90338345 + 61904907 61905010 MER1B 344 - 109 210 102708 11 2 0 17 0 1 5 45 45 5 1 0 17 chain 134616 chr16 90338345 + 61918303 61919790 L1HS 6032 + 2 1489 13582 254 1 0 450 0 1 782 chain 133222 chr16 90338345 + 61919807 61921249 L1PA3long 6157 + 4700 6142 13724 1442 chain 32731 chr16 90338345 + 61970785 61971268 LTR7B 505 + 0 496 39730 105 0 10 69 37 13 28 3 27 26 0 2 41 0 2 42 1 0 21 0 1 54 2 1 54 chain 37873 chr16 90338345 + 61992186 61992601 L1PA3long 6157 + 5742 6157 36160 415 chain 30077 chr16 90338345 + 62012972 62013291 AluYb9 318 + 0 318 41980 123 1 0 195 chain 60095 chr16 90338345 + 62085551 62086271 L1PA7 6471 + 5731 6457 26347 251 3 4 43 0 5 423 chain 60340 chr16 90338345 + 62090765 62091417 L1PA2 6032 + 5234 5886 26278 652 chain 13073 chr16 90338345 + 62091417 62091558 L1PA2 6032 + 5887 6028 64978 141 chain 48675 chr16 90338345 + 62119119 62119731 L1P1 4361 + 3729 4341 30061 212 7 9 64 0 1 133 1 0 157 1 0 23 2 1 12 chain 4157 chr16 90338345 + 62148641 62148856 MLT1C 463 + 74 294 90414 27 29 23 14 1 0 6 0 2 19 102 112 17 chain 38476 chr16 90338345 + 62161231 62161658 L1PA3long 6157 + 5720 6147 35735 427 chain 45227 chr16 90338345 + 62259281 62259897 MER41B 635 + 14 635 31463 114 0 1 116 0 1 4 1 0 201 18 17 110 9 8 28 0 6 15 chain 30046 chr16 90338345 + 62271026 62271411 L1PA6 6164 + 5764 6156 42005 9 0 5 221 4 5 11 1 2 139 chain 38465 chr16 90338345 + 62333314 62333746 L1PA5 6144 + 5711 6143 35745 432 chain 31142 chr16 90338345 + 62389065 62389575 L1PB1 5432 + 4936 5411 41023 178 3 0 24 1 0 9 1 0 11 5 1 8 2 0 52 1 0 17 1 0 45 1 0 8 32 19 19 2 0 4 1 0 15 2 0 24 1 0 21 1 0 11 1 0 9 chain 98589 chr16 90338345 + 62427531 62428713 L1PA7 6471 + 5140 6319 18468 481 8 7 211 9 5 356 0 1 42 0 1 75 chain 57178 chr16 90338345 + 62445041 62445798 MER4E 760 + 0 760 27203 17 2 0 37 0 1 4 1 0 88 0 10 9 1 0 5 11 5 159 5 4 107 4 8 23 2 1 282 chain 49621 chr16 90338345 + 62518973 62519557 L1P3 4156 + 2634 3226 29715 249 0 4 14 1 0 5 0 1 186 0 4 129 chain 18055 chr16 90338345 + 62521223 62521441 MER57A1 433 + 0 218 58604 218 chain 170970 chr16 90338345 + 62553567 62555527 L1PA5 6144 + 2974 4941 11053 218 0 1 9 7 2 75 1 0 401 0 2 194 25 27 98 0 4 486 0 4 446 chain 37485 chr16 90338345 + 62612109 62612515 L1PA4 6152 + 4817 5224 36410 144 0 1 262 chain 4844 chr16 90338345 + 62642156 62642556 MLT1F2 592 + 197 590 86462 8 12 0 4 4 0 15 6 7 37 277 285 37 chain 3465 chr16 90338345 + 62651435 62651471 MLT1A0 366 + 75 111 95500 36 chain 78027 chr16 90338345 + 62668813 62669848 MER11A 1151 + 0 1151 22094 45 10 109 140 4 0 33 0 2 231 1 0 30 15 1 217 0 1 12 5 38 112 0 1 115 1 0 64 chain 11804 chr16 90338345 + 62725306 62725445 LTR12C 1709 + 928 1067 67201 139 chain 3085 chr16 90338345 + 62725499 62725534 LTR12C 1709 + 683 718 98927 35 chain 35561 chr16 90338345 + 62796845 62797292 LTR2 463 + 0 463 37679 162 7 27 38 5 0 47 0 1 188 chain 27616 chr16 90338345 + 62871297 62871672 MLT2A1 477 + 0 384 45441 15 0 4 123 26 31 211 chain 5561 chr16 90338345 + 63008952 63009028 MADE1 96 + 0 96 82977 22 3 23 51 chain 11247 chr16 90338345 + 63046496 63046682 L1PB1 5432 + 5120 5296 68167 15 1 0 12 16 11 9 2 0 53 2 1 59 1 0 16 chain 5274 chr16 90338345 + 63090861 63090986 MER58A 224 + 42 182 84321 38 44 59 43 chain 41771 chr16 90338345 + 63096098 63096646 MLT2A2 560 + 0 560 33512 190 12 11 4 0 1 200 0 11 73 0 1 69 chain 538850 chr16 90338345 + 63119951 63125971 L1PA3long 6157 + 2 6156 1406 33 2 1 105 17 13 460 0 4 158 0 128 684 1 0 7 2 1 1663 0 4 460 0 1 355 1 0 1432 0 1 311 0 1 228 0 3 101 chain 501202 chr16 90338345 + 63147705 63153283 L1PA3long 6157 + 35 6157 3093 59 0 526 542 0 3 25 1 4 2067 5 9 453 0 1 220 0 1 136 1 0 132 6 7 945 1 0 831 0 7 154 chain 7623 chr16 90338345 + 63158047 63158145 MSTC-int 1625 + 1519 1624 75818 92 0 7 6 chain 30996 chr16 90338345 + 63222764 63223121 L1PA2 6032 + 5671 6032 41130 200 7 11 150 chain 3721 chr16 90338345 + 63254166 63254209 L1PB2 3958 + 3795 3838 93464 43 chain 52845 chr16 90338345 + 63274448 63275019 L1PA2 6032 + 5461 6032 28625 571 chain 39416 chr16 90338345 + 63322357 63322881 MER41A 554 + 6 534 35065 357 1 0 29 16 21 121 chain 553463 chr16 90338345 + 63388077 63394106 L1PA2 6032 + 4 6032 517 253 1 0 5775 chain 4696 chr16 90338345 + 63399471 63399574 L1M3 994 + 171 282 87287 26 24 23 34 3 12 16 chain 63551 chr16 90338345 + 63443388 63444097 L1PA4 6152 + 4623 5333 25512 6 0 1 703 chain 12195 chr16 90338345 + 63453108 63453253 Tigger4 2445 + 817 962 66484 145 chain 10330 chr16 90338345 + 63484409 63484523 L1PA4 6152 + 3769 3883 69738 114 chain 43930 chr16 90338345 + 63524994 63525506 MER9a2 513 + 0 513 32178 128 0 1 384 chain 25748 chr16 90338345 + 63552291 63552597 L1PA7 6471 + 6152 6461 48098 105 0 3 201 chain 3067 chr16 90338345 + 63611164 63611202 L1PREC2 3366 + 2698 2737 99127 18 0 1 20 chain 43049 chr16 90338345 + 63659232 63659761 L1PA7 6471 + 5942 6470 32745 322 1 0 206 chain 44964 chr16 90338345 + 63760286 63760838 LTR14C 587 + 0 587 31604 179 0 34 333 0 1 40 chain 26562 chr16 90338345 + 63783730 63784008 AluYa5 310 + 27 305 46887 278 chain 30150 chr16 90338345 + 63787671 63788037 L1PA7 6471 + 6092 6458 41888 366 chain 127840 chr16 90338345 + 63819700 63821378 L1P2 5180 + 2 1702 14306 137 30 29 79 1 0 67 4 0 193 1 0 8 1 0 196 12 19 56 2 1 5 1 0 141 0 25 744 chain 30217 chr16 90338345 + 63998703 63999138 MER4A1 472 + 7 450 41836 7 0 2 20 0 5 189 1 22 92 0 1 15 32 11 79 chain 5273 chr16 90338345 + 64052981 64053071 L1M3f 2199 + 1182 1269 84323 13 13 9 7 0 1 57 chain 20792 chr16 90338345 + 64066744 64067011 AluSc 308 + 40 299 55370 238 0 1 12 9 0 8 chain 158743 chr16 90338345 + 64114197 64116004 L1PA5 6144 + 4336 6144 11823 386 2 1 425 0 1 280 0 1 247 5 5 462 chain 95446 chr16 90338345 + 64148670 64149726 L1PA3long 6157 + 5102 6157 18851 156 1 0 899 chain 32447 chr16 90338345 + 64157055 64157411 L1PA5 6144 + 5302 5658 39992 356 chain 39831 chr16 90338345 + 64157411 64157872 L1PA5 6144 + 5666 6127 34794 461 chain 14657 chr16 90338345 + 64179081 64179442 THE1B 368 + 2 368 62728 75 161 166 125 chain 43803 chr16 90338345 + 64296466 64297014 MER41A 554 + 0 554 32250 87 8 9 369 0 5 84 chain 3403 chr16 90338345 + 64334720 64334769 L1M3 994 + 693 737 96034 7 5 0 37 chain 113919 chr16 90338345 + 64343712 64345194 LTR12C 1709 + 0 1699 16558 300 0 1 158 8 9 100 9 10 141 0 118 126 0 1 4 0 40 29 0 2 33 0 47 26 4 5 74 11 4 342 0 8 24 19 23 74 chain 8621 chr16 90338345 + 64352771 64352877 MLT1A0 366 + 217 323 73407 106 chain 70621 chr16 90338345 + 64433275 64434164 L1P3 4156 + 3252 4139 23839 229 1 3 458 0 1 58 3 1 98 7 5 8 1 0 26 chain 110344 chr16 90338345 + 64466804 64468192 L1PA7 6471 + 5100 6470 17028 408 0 2 87 1 0 24 1 0 77 0 2 438 0 1 157 27 28 80 4 2 14 32 12 38 chain 7827 chr16 90338345 + 64652038 64652138 L1P4a 3072 + 840 944 75302 79 0 4 21 chain 59631 chr16 90338345 + 64775119 64775784 L1PA4 6152 + 4522 5187 26478 665 chain 31125 chr16 90338345 + 64800045 64800448 L1PA8A 6298 + 5887 6291 41039 292 8 9 103 chain 19307 chr16 90338345 + 65006714 65006988 THE1B 368 + 0 285 57230 44 6 20 97 2 1 38 2 0 85 chain 60235 chr16 90338345 + 65039253 65039927 L1PA4 6152 + 4682 5358 26314 310 0 1 301 0 1 63 chain 3303 chr16 90338345 + 65058784 65058824 MIRb 242 + 100 141 96981 20 0 1 20 chain 6944 chr16 90338345 + 65096251 65096338 MLT1A1 405 + 294 381 77797 87 chain 14179 chr16 90338345 + 65323827 65324173 L1PB1 5432 + 5114 5427 63349 24 1 0 4 5 4 12 18 12 48 6 5 14 1 0 44 40 27 19 7 4 15 2 0 24 1 0 21 1 0 12 2 1 18 2 0 5 chain 516841 chr16 90338345 + 65356743 65362490 L1PA3long 6157 + 10 5908 2428 142 4 16 148 1 2 463 0 128 540 5 14 1804 0 5 443 4 0 2193 chain 13694 chr16 90338345 + 65461769 65462045 L1PB1 5432 + 5167 5420 64023 53 2 1 16 1 0 43 1 0 16 3 0 7 18 9 12 27 22 24 1 0 19 3 2 13 1 0 16 chain 10570 chr16 90338345 + 65477352 65477486 L1PA8 5853 + 5709 5841 69287 31 3 2 18 1 0 81 chain 12177 chr16 90338345 + 65478525 65478676 L1PA8 5853 + 5704 5853 66516 36 2 1 19 1 0 93 chain 23070 chr16 90338345 + 65497017 65497347 L1PA8 5853 + 5504 5842 52257 58 1 0 46 2 0 70 18 31 31 2 1 19 1 0 82 chain 556478 chr16 90338345 + 65551127 65557269 L1PA3long 6157 + 4 6154 334 191 0 4 2498 1 0 570 0 5 443 4 0 137 0 3 1671 0 1 627 chain 5436 chr16 90338345 + 65644038 65644114 MER53 195 + 11 94 83524 56 1 8 19 chain 556916 chr16 90338345 + 65690011 65696020 L1HS 6032 + 13 6032 302 1308 3 12 3901 0 1 797 chain 4014 chr16 90338345 + 65700648 65700712 MLT1H1 527 + 323 377 91355 10 6 0 5 4 0 39 chain 9033 chr16 90338345 + 65704089 65704298 THE1B 368 + 155 366 72491 13 3 2 15 43 48 8 1 0 65 17 16 44 chain 3198 chr16 90338345 + 65758215 65758250 MER5A1 166 + 81 116 97912 35 chain 39100 chr16 90338345 + 65764932 65765435 MER41B 635 + 0 503 35285 128 0 1 231 4 3 140 chain 39916 chr16 90338345 + 65770885 65771432 MER61E 571 + 0 559 34727 86 0 13 297 3 0 5 5 8 108 16 15 27 chain 31392 chr16 90338345 + 65802686 65803052 L1PA2 6032 + 5675 6030 40817 302 12 1 52 chain 80054 chr16 90338345 + 65813155 65814052 MER11D 897 + 0 897 21616 67 0 1 4 1 0 825 chain 367060 chr16 90338345 + 65927210 65931559 L1PA6 6164 + 0 6159 5712 90 1 512 48 0 4 583 0 1 509 0 1301 117 5 4 15 5 6 38 2 1 828 0 1 4 1 0 258 0 1 765 6 0 186 0 1 880 2 0 6 chain 14301 chr16 90338345 + 65971874 65972151 L1PB1 5432 + 5174 5427 63196 20 0 1 25 2 1 10 6 5 45 1 0 15 1 0 4 2 0 7 10 1 19 2 0 5 1 0 14 9 7 17 1 0 21 1 0 13 1 0 18 2 0 5 chain 46885 chr16 90338345 + 66053911 66054576 MER4A 717 + 0 687 30703 117 19 6 61 0 2 7 0 1 60 10 33 112 0 1 57 0 9 19 7 5 7 2 0 48 0 4 97 1 0 41 chain 4134 chr16 90338345 + 66200278 66200551 L1MB7 1623 + 1388 1593 90548 31 209 141 33 chain 16793 chr16 90338345 + 66234548 66235221 MLT1A0 366 + 2 366 60040 21 1 0 24 63 66 44 336 14 5 0 1 128 21 31 30 chain 6043 chr16 90338345 + 66290919 66291071 L1MA4 2864 + 2307 2457 80914 13 17 14 41 38 39 43 chain 8143 chr16 90338345 + 66301808 66301898 5S 121 + 0 90 74534 90 chain 4911 chr16 90338345 + 66339249 66339307 MSTB 430 + 17 75 86101 58 chain 361347 chr16 90338345 + 66495989 66500000 L1P1 4361 + 1 4031 5788 1415 0 5 25 0 5 681 0 10 534 0 1 494 1 0 127 1 0 733 chain 186918 chr16 90338345 + 66500000 66502114 L1PA4 6152 + 4037 6140 10257 252 15 0 59 0 4 142 0 1 806 1 0 34 0 1 48 1 0 756 chain 29313 chr16 90338345 + 66504476 66504787 AluYa5 310 + 0 310 42866 132 1 0 178 chain 93384 chr16 90338345 + 66514123 66515182 SVA_B 1603 + 0 1603 19130 19 0 25 456 2 517 155 0 4 427 chain 8095 chr16 90338345 + 66531819 66532015 L1PA16 3655 + 3457 3619 74650 60 13 0 11 8 13 37 39 18 7 5 0 16 chain 5253 chr16 90338345 + 66550504 66550565 HY1 111 + 50 111 84426 61 chain 141163 chr16 90338345 + 66630309 66631930 SVA_D 2077 + 0 2062 13016 13 2 1 17 0 6 178 0 1 231 0 40 55 0 40 306 2 271 28 0 1 30 0 2 9 0 79 32 0 1 47 0 1 55 0 1 4 0 1 612 chain 4908 chr16 90338345 + 66638456 66638526 L1MA8 2339 + 2129 2196 86117 33 4 1 33 chain 191102 chr16 90338345 + 66837581 66840369 L1PB1 5432 + 2969 5389 10064 244 323 0 33 0 2 484 11 0 894 3 0 477 7 4 7 1 0 24 1 0 9 27 20 53 2 1 16 1 0 44 1 0 6 33 21 15 12 9 12 2 0 26 1 0 19 chain 30323 chr16 90338345 + 66896615 66897042 LTR7B 505 + 0 495 41736 108 0 10 57 0 38 12 3 27 26 0 2 85 1 0 30 4 0 46 14 13 41 chain 100193 chr16 90338345 + 66974097 66975386 LTR12C 1709 + 0 1709 18280 263 1 0 4 0 2 14 0 9 46 0 43 83 3 0 5 0 2 179 0 278 182 1 0 7 3 1 99 18 11 73 2 1 138 0 1 15 0 101 70 6 5 77 chain 4372 chr16 90338345 + 67084520 67084598 L1MB2 1706 + 1593 1671 89045 5 1 0 13 1 0 8 1 0 10 3 6 36 chain 4017 chr16 90338345 + 67317139 67317189 MER33 330 + 9 59 91323 50 chain 30049 chr16 90338345 + 67490578 67491001 LOR1b 457 + 0 439 42001 29 1 11 182 1 0 14 23 27 119 0 3 54 chain 3931 chr16 90338345 + 67505375 67505419 Charlie1b 519 + 126 170 91903 44 chain 9595 chr16 90338345 + 67514669 67514790 LOR1a 498 + 112 233 71274 121 chain 3047 chr16 90338345 + 67676450 67676482 MLT2D 439 + 399 431 99343 32 chain 61763 chr16 90338345 + 67712313 67712971 SVA_E 1901 + 0 656 25924 153 2 0 503 chain 8845 chr16 90338345 + 67772943 67773045 MSTB-int 1649 + 1541 1643 72870 102 chain 93500 chr16 90338345 + 67982093 67983447 LTR12C 1709 + 0 1709 19113 278 5 14 5 0 1 40 0 43 82 0 1 186 0 278 158 0 47 75 24 0 7 20 13 138 23 27 89 52 56 89 1 0 82 chain 118788 chr16 90338345 + 67998032 67999459 LTR12C 1709 + 0 1709 15750 266 0 1 152 2 1 267 0 279 146 1 0 5 3 1 106 0 4 357 4 6 118 chain 9688 chr16 90338345 + 68030177 68030307 MER65D 500 + 0 138 71085 40 0 10 83 2 0 5 chain 6804 chr16 90338345 + 68055793 68055873 MADE1 96 + 0 96 78307 29 0 16 51 chain 3302 chr16 90338345 + 68090211 68090252 MIRb 242 + 169 211 96993 36 0 1 5 chain 21350 chr16 90338345 + 68156049 68156320 AluSq10 312 + 15 288 54702 30 2 8 111 4 0 124 chain 29712 chr16 90338345 + 68527167 68527550 LTR12C 1709 + 769 1198 42355 68 1 0 15 1 0 81 0 1 137 0 47 80 chain 3207 chr16 90338345 + 68527680 68527715 LTR12C 1709 + 683 718 97837 35 chain 2725 chr16 90338345 + 68614007 68614049 LTR67B 553 + 61 104 102151 12 1 2 29 chain 23023 chr16 90338345 + 68618560 68618837 AluSp 311 + 5 289 52325 121 10 17 146 chain 21692 chr16 90338345 + 68620780 68621053 MER4E1 777 + 18 291 54236 273 chain 2979 chr16 90338345 + 68690967 68691002 MER41A 554 + 400 436 100071 30 0 1 5 chain 9254 chr16 90338345 + 68710361 68710521 MER20 218 + 1 161 72012 19 14 13 40 13 14 74 chain 8070 chr16 90338345 + 68742478 68742573 5S 121 + 2 91 74699 70 6 0 19 chain 18800 chr16 90338345 + 68779573 68779836 AluSc 308 + 0 264 57782 51 9 6 127 10 14 66 chain 22115 chr16 90338345 + 69135747 69136043 AluSp 311 + 8 296 53678 14 4 0 110 8 5 4 1 0 155 chain 38493 chr16 90338345 + 69172705 69173540 MER41A 554 + 0 554 35714 100 10 12 257 312 0 21 5 9 13 0 20 37 2 7 78 chain 7980 chr16 90338345 + 69191123 69191221 HY3 101 + 1 100 74924 55 1 2 42 chain 22408 chr16 90338345 + 69246819 69247056 L1PA2 6032 + 5790 6027 53261 237 chain 22472 chr16 90338345 + 69255916 69256195 AluSq4 311 + 11 292 53159 120 1 2 126 3 4 29 chain 2856 chr16 90338345 + 69278950 69278980 U6 107 + 0 30 101178 30 chain 6538 chr16 90338345 + 69313559 69313665 MER58B 340 + 76 195 79208 10 1 0 11 1 0 8 3 18 72 chain 22853 chr16 90338345 + 69445691 69445968 AluSp 311 + 10 294 52572 72 0 9 16 2 0 187 chain 191839 chr16 90338345 + 69516248 69518443 L1PA5 6144 + 3935 6144 10030 237 0 1 4 1 0 647 0 14 19 0 1 436 2 0 497 1 0 339 1 3 11 chain 2912 chr16 90338345 + 69539018 69539054 MER3 215 + 161 198 100738 4 0 1 32 chain 9755 chr16 90338345 + 69551978 69552104 MER85 139 + 0 139 70920 54 0 3 32 0 10 40 chain 14794 chr16 90338345 + 69578013 69578201 MER2 342 + 88 278 62537 23 1 0 70 0 3 94 chain 16960 chr16 90338345 + 69633491 69633780 L1MA5A 2387 + 2053 2306 59851 16 1 0 39 1 0 6 0 5 36 2 0 32 1 0 25 11 4 14 28 0 66 1 0 10 chain 197524 chr16 90338345 + 69665184 69667330 L1PA3long 6157 + 4010 6154 9794 1366 3 2 762 1 0 14 chain 29362 chr16 90338345 + 69687912 69688226 AluYb8 318 + 0 312 42793 132 2 0 180 chain 21732 chr16 90338345 + 69730690 69731375 MLT2A2 560 + 0 480 54190 111 1 0 57 12 10 15 355 39 70 2 111 43 1 6 18 chain 6708 chr16 90338345 + 69781036 69781120 HY4 93 + 0 84 78615 84 chain 9044 chr16 90338345 + 69905476 69905634 Tigger4a 237 + 55 213 72464 36 23 27 56 4 0 39 chain 3535 chr16 90338345 + 69909934 69910031 MER58A 224 + 46 143 94982 37 45 45 15 chain 29406 chr16 90338345 + 69966277 69966664 MER41A 554 + 0 426 42725 119 15 52 15 2 0 222 0 4 14 chain 43653 chr16 90338345 + 70004016 70004864 MER41A 554 + 13 553 32351 52 0 1 367 309 0 120 chain 133298 chr16 90338345 + 70007177 70008685 L1PA5 6144 + 4622 6128 13716 672 1 0 89 1 0 745 chain 182365 chr16 90338345 + 70044731 70046768 L1PA4 6152 + 3290 5353 10478 625 0 1 519 0 22 844 0 3 49 chain 170557 chr16 90338345 + 70050354 70052962 SVA_E 1901 + 0 1899 11082 153 1 0 499 0 40 125 1 0 19 1 0 87 53 0 51 127 0 167 569 0 75 0 3 680 chain 3433 chr16 90338345 + 70051248 70051293 SVA_E 1901 + 927 1021 48155 26 0 49 19 chain 2517 chr16 90338345 + 70051344 70051377 SVA_E 1901 + 1100 1133 48155 33 chain 6032 chr16 90338345 + 70051382 70051471 SVA_E 1901 + 1012 1100 40560 83 1 0 5 chain 14368 chr16 90338345 + 70051638 70051850 SVA_E 1901 + 1268 1382 40560 15 97 0 82 4 3 14 chain 2073 chr16 90338345 + 70051686 70051707 SVA_E 1901 + 843 864 105929 21 chain 18851 chr16 90338345 + 70051868 70052206 SVA_E 1901 + 923 1141 57713 30 78 0 142 1 0 21 41 0 25 chain 5674 chr16 90338345 + 70051898 70051959 SVA_E 1901 + 1304 1365 58817 61 chain 4397 chr16 90338345 + 70137401 70137504 L1MB3 1562 + 1323 1425 88901 28 8 7 14 19 20 29 1 0 4 chain 29537 chr16 90338345 + 70189190 70189577 MER41A 554 + 0 426 42564 119 15 52 15 2 0 222 0 4 14 chain 161453 chr16 90338345 + 70203900 70205972 SVA_F 1814 + 10 1814 11650 874 47 0 41 1 0 4 173 33 175 79 1 32 1 0 11 2 0 617 0 1 15 chain 1563 chr16 90338345 + 70204791 70204821 SVA_F 1814 + 966 997 51355 28 1 2 1 chain 6616 chr16 90338345 + 70204867 70204994 SVA_F 1814 + 1043 1120 51355 47 49 0 26 1 0 4 chain 4237 chr16 90338345 + 70204917 70204963 SVA_F 1814 + 1142 1188 76484 46 chain 1563 chr16 90338345 + 70205215 70205245 SVA_F 1814 + 1264 1293 51355 10 4 3 16 chain 2972 chr16 90338345 + 70205245 70205294 SVA_F 1814 + 1040 1089 55782 49 chain 41379 chr16 90338345 + 70207168 70208015 MER41A 554 + 13 553 33743 50 5 6 358 314 6 120 chain 130014 chr16 90338345 + 70210210 70211706 L1PA5 6144 + 4622 6132 14037 677 0 3 479 0 10 188 10 11 142 chain 28188 chr16 90338345 + 70212323 70212780 LTR7B 505 + 0 494 44581 25 8 0 13 1 2 50 0 3 12 0 10 60 0 38 12 34 27 26 0 2 85 1 0 76 14 13 40 chain 29501 chr16 90338345 + 70212968 70213407 LTR7B 505 + 9 496 42606 96 0 10 69 6 13 28 0 25 6 1 0 22 0 2 42 0 1 11 10 15 16 1 0 23 0 1 52 14 13 42 chain 5746 chr16 90338345 + 70238005 70238071 Tigger4a 237 - 166 232 82147 66 chain 25077 chr16 90338345 + 70271251 70271548 AluSp 311 + 5 302 49157 297 chain 21483 chr16 90338345 + 70403544 70403812 AluSc5 308 + 13 281 54534 117 1 0 90 1 2 59 chain 23322 chr16 90338345 + 70441180 70441486 AluSg7 307 + 0 291 51898 79 18 3 209 chain 3523 chr16 90338345 + 70446816 70446926 LTR16A1 462 + 261 372 95084 27 54 55 29 chain 55779 chr16 90338345 + 70742852 70743689 LTR12 884 + 0 869 27636 25 9 8 70 36 0 62 0 4 119 63 1 27 3 28 34 2 0 171 2 106 214 chain 5077 chr16 90338345 + 70743173 70743236 LTR12 884 + 156 264 69016 9 0 4 37 0 41 17 chain 4202 chr16 90338345 + 70788693 70788740 tRNA-Gly-GGY 63 + 0 47 90111 47 chain 5143 chr16 90338345 + 70789506 70789565 tRNA-Gly-GGY 63 + 0 58 84948 54 1 0 4 chain 62974 chr16 90338345 + 70869756 70870613 THE1B-int 1605 + 0 893 25636 17 4 0 7 2 3 156 0 3 27 8 11 76 5 6 126 0 25 41 0 5 191 1 3 9 2 1 176 0 1 9 chain 22824 chr16 90338345 + 70878016 70878358 THE1B 368 + 0 353 52625 169 1 0 29 0 3 8 20 24 7 1 0 53 13 19 41 chain 110172 chr16 90338345 + 70925420 70926621 L1PA3long 6157 + 4956 6157 17060 1201 chain 166943 chr16 90338345 + 70947641 70949468 L1PA3long 6157 + 4330 6157 11275 1827 chain 30322 chr16 90338345 + 70985766 70986113 L1PA5 6144 + 5795 6141 41738 31 0 1 64 1 0 98 1 0 152 chain 87706 chr16 90338345 + 71057660 71058604 L1PA2 6032 + 5082 6030 20096 100 0 4 844 chain 41424 chr16 90338345 + 71196570 71197106 MER41A 554 + 10 547 33719 76 6 7 86 2 1 217 1 0 4 0 1 28 0 1 116 chain 47299 chr16 90338345 + 71199838 71200394 MER41A 554 + 0 554 30536 360 1 0 9 1 0 185 chain 137393 chr16 90338345 + 71222111 71224080 L1PB2 3958 + 1844 3838 13309 128 0 1 255 0 1 38 0 3 213 9 0 60 0 1 4 1 0 94 2 1 5 0 19 257 1 0 58 5 6 48 38 37 72 5 3 16 0 1 142 2 0 54 1 0 13 11 0 21 7 8 35 2 0 13 2 0 11 10 13 70 1 0 72 1 0 14 0 33 17 2 1 71 2 0 21 2 1 63 chain 3852 chr16 90338345 + 71226529 71226588 L1ME1 1623 + 783 848 92490 18 0 7 23 1 0 17 chain 168567 chr16 90338345 + 71227432 71229299 L1PA5 6144 + 4250 6127 11179 236 0 4 809 0 4 160 0 3 12 1 0 649 chain 82924 chr16 90338345 + 71308019 71308952 L1PA5 6144 + 1668 2602 21034 363 0 1 570 chain 85961 chr16 90338345 + 71332578 71333657 L1PA11 4918 + 3365 4437 20449 301 5 3 283 0 2 374 4 0 65 2 1 13 2 0 30 chain 36705 chr16 90338345 + 71404175 71404695 LTR10G 522 + 0 522 36951 38 1 0 47 5 8 30 2 3 226 0 1 95 4 1 14 18 19 40 chain 28891 chr16 90338345 + 71405471 71405780 AluYa5 310 + 1 310 43496 309 chain 5062 chr16 90338345 + 71426492 71426547 tRNA-Met 55 + 0 55 85343 55 chain 31625 chr16 90338345 + 71498101 71498500 MSTA 426 + 7 406 40642 399 chain 5476 chr16 90338345 + 71503936 71504034 L1PA15 4387 + 4276 4366 83325 37 2 0 13 8 3 26 1 0 11 chain 22056 chr16 90338345 + 71551854 71552127 AluSc 308 + 19 290 53756 259 3 1 11 chain 17075 chr16 90338345 + 71559350 71559585 MSTA-int 1630 + 0 237 59731 13 5 4 95 1 4 121 chain 125390 chr16 90338345 + 71588846 71590252 SVA_D 2077 + 42 2066 14646 500 0 40 233 1 0 13 0 40 52 1 539 56 0 1 550 chain 293103 chr16 90338345 + 71594984 71599570 L1PB1 5432 + 1450 5424 7036 30 10 0 19 1 0 38 0 4 128 0 7 148 311 55 334 5 6 39 5 9 91 320 0 17 0 4 116 9 0 43 0 2 278 2 0 6 8 11 252 1 0 115 1 0 170 0 1 365 11 0 99 0 2 17 3 6 100 2 1 224 0 1 178 14 15 5 1 0 74 17 18 148 4 0 453 0 4 20 1 2 9 4 0 24 1 0 5 21 15 9 2 0 53 2 1 16 1 0 44 1 0 15 3 0 7 54 43 24 2 1 20 1 0 13 1 0 16 1 0 4 chain 128584 chr16 90338345 + 71604286 71605686 L1PA2 6032 + 3176 4576 14209 1400 chain 4382 chr16 90338345 + 71610127 71610188 LTR49 580 + 495 557 88981 36 0 1 4 0 1 4 1 0 16 chain 7469 chr16 90338345 + 71666090 71666182 U6 107 + 0 92 76201 92 chain 31953 chr16 90338345 + 71833897 71834310 MLT2A1 477 + 0 464 40379 28 0 5 107 0 1 28 0 4 219 4 46 19 1 0 7 chain 3106 chr16 90338345 + 71844877 71844912 MADE1 96 - 61 96 98729 35 chain 23480 chr16 90338345 + 71921867 71922150 AluY 311 + 12 293 51617 120 0 1 82 3 0 78 chain 9481 chr16 90338345 + 71993568 71993694 MER85 139 + 0 138 71521 42 0 1 53 0 13 7 2 0 22 chain 32409 chr16 90338345 + 72034273 72034682 MER51B 395 + 0 395 40035 39 13 0 206 1 0 150 chain 20242 chr16 90338345 + 72085729 72086018 AluY 311 + 6 299 56087 31 1 2 77 0 1 15 0 1 42 11 11 79 5 6 28 chain 315650 chr16 90338345 + 72144787 72148532 L1PA7 6471 + 2713 6469 6489 624 0 1 123 1 2 372 3 4 147 0 5 441 3 4 358 0 1 819 0 3 452 12 13 373 3 0 14 chain 3293 chr16 90338345 + 72154935 72154973 LTR86A2 456 + 30 68 97082 38 chain 15906 chr16 90338345 + 72163710 72164033 L1PB1 5432 + 5105 5397 61142 9 3 0 23 1 0 9 1 0 12 5 1 9 2 0 52 18 16 37 12 11 12 22 12 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 6 chain 7952 chr16 90338345 + 72277332 72277431 L1PA8 5853 + 5749 5847 74996 11 1 0 87 chain 436879 chr16 90338345 + 72324392 72329565 L1P2 5180 + 3 5178 4628 147 1 0 32 1 2 10 1 0 41 0 2 10 14 13 20 2 1 233 0 1 48 1 0 224 1 0 6 1 0 354 0 1 1700 1 0 110 7 8 694 0 1 778 0 1 650 1 0 46 1 0 17 0 5 16 1 0 4 chain 72569 chr16 90338345 + 72329828 72330678 L1PA6 6164 + 5311 6162 23415 4 0 1 327 0 1 356 1 0 162 chain 380622 chr16 90338345 + 72342000 72346146 L1PA2 6032 + 1881 6028 5470 3993 0 1 153 chain 121553 chr16 90338345 + 72352438 72353805 L1PA5 6144 + 4777 6144 15249 606 1 0 618 0 1 142 chain 68245 chr16 90338345 + 72496812 72497538 SVA_E 1901 + 1177 1901 24395 717 2 0 7 chain 57132 chr16 90338345 + 72535667 72536331 L1PA5 6144 + 5461 6128 27218 4 0 1 344 1 2 175 0 1 140 chain 533603 chr16 90338345 + 72543208 72549682 L1PA7 6471 + 0 6464 1674 411 4 5 258 7 8 27 7 9 184 1 4 448 12 12 91 32 1 1182 0 1 69 0 1 626 2 0 147 1 2 7 1 0 10 3 0 46 0 4 23 0 3 43 0 1 319 0 4 66 0 2 471 0 1 317 0 2 150 1 0 19 0 1 141 1 0 32 1 4 83 0 3 46 3 0 19 1 0 50 0 1 268 2 0 842 chain 7719 chr16 90338345 + 72563211 72563353 LTR54 533 + 344 503 75568 17 1 5 66 1 15 15 20 19 22 chain 91918 chr16 90338345 + 72570569 72571582 L1PA3long 6157 + 5142 6157 19356 1008 0 2 5 chain 534316 chr16 90338345 + 72580798 72586873 L1PA4 6152 + 11 6084 1648 43 6 9 372 21 15 542 0 3 1218 4 0 3260 2 1 26 0 1 223 0 1 313 0 1 45 chain 556798 chr16 90338345 + 72627274 72633298 L1PA2 6032 + 0 6026 309 749 0 1 939 0 1 4336 chain 2989 chr16 90338345 + 72720526 72720565 MER3 215 - 128 178 99954 32 0 11 7 chain 60311 chr16 90338345 + 72771929 72772680 LTR12 884 + 0 869 26292 24 1 0 91 0 25 60 0 2 30 0 1 22 0 91 32 2 0 362 6 8 121 chain 9309 chr16 90338345 + 72831844 72831973 MER85 139 + 1 139 71895 95 5 14 29 chain 33327 chr16 90338345 + 73125394 73125877 MLT2A1 477 + 0 469 39238 168 5 2 9 0 1 21 0 3 6 5 4 183 6 0 18 2 0 9 22 16 29 chain 28662 chr16 90338345 + 73486096 73486503 MER51B 395 + 0 395 43858 14 0 1 25 13 0 205 1 0 56 0 1 34 4 3 17 8 9 30 chain 20957 chr16 90338345 + 73500000 73500294 Tigger3b 1229 + 233 532 55182 18 1 2 32 7 11 36 1 0 190 0 1 9 chain 25565 chr16 90338345 + 73688686 73689045 THE1B 368 + 0 368 48377 169 1 0 20 44 54 125 chain 28565 chr16 90338345 + 73707436 73707750 L1PA4 6152 + 5837 6151 44010 314 chain 115928 chr16 90338345 + 73759908 73761550 L1PA10 4194 + 2547 4150 16249 76 0 1 32 5 1 15 10 14 89 0 7 318 27 0 20 23 7 26 0 7 209 1 2 29 0 1 11 21 18 140 1 0 38 8 1 237 4 3 92 1 7 52 6 1 105 0 1 9 3 0 34 chain 7981 chr16 90338345 + 73789983 73790073 MER131 149 + 25 115 74923 90 chain 24646 chr16 90338345 + 73833471 73833762 L1PA7 6471 + 6178 6465 49799 13 1 0 268 3 0 6 chain 37113 chr16 90338345 + 73904187 73904779 L1PB1 5432 + 4860 5420 36672 243 1 0 35 1 0 9 16 11 11 3 1 52 1 0 15 8 7 37 1 0 15 3 0 14 9 0 17 24 19 24 1 0 21 1 0 13 1 0 16 chain 98701 chr16 90338345 + 73934141 73935541 L1PA11 4918 + 3171 4567 18448 44 0 4 117 1 0 107 2 0 217 1 0 28 1 2 5 2 0 115 1 6 133 0 4 261 7 12 84 0 4 17 2 0 66 1 3 6 3 0 14 1 0 55 22 19 14 4 0 9 8 3 10 13 9 10 6 5 13 chain 15755 chr16 90338345 + 73944553 73944761 L1PA8 5853 + 5648 5853 61346 31 1 0 14 1 0 66 2 1 93 chain 56109 chr16 90338345 + 73960065 73960740 L1PA7 6471 + 5772 6459 27534 135 0 10 263 0 1 194 0 1 83 chain 7605 chr16 90338345 + 73977587 73977674 MER50 708 + 74 161 75855 87 chain 9812 chr16 90338345 + 73979397 73979525 MER85 139 + 0 139 70798 8 0 1 80 0 10 40 chain 46634 chr16 90338345 + 74097966 74098850 MER41A 554 + 0 554 30803 428 330 0 126 chain 3845 chr16 90338345 + 74104023 74104069 MLT1D 503 + 457 503 92532 46 chain 33777 chr16 90338345 + 74114313 74114755 MLT2A1 477 + 0 477 38869 168 5 2 9 0 1 23 0 1 181 4 0 12 3 43 37 chain 17232 chr16 90338345 + 74119569 74119757 AluYk12 309 + 121 309 59548 188 chain 6256 chr16 90338345 + 74133509 74133878 MLT2A1 477 + 0 367 40776 169 4 1 9 0 1 23 0 1 39 7 6 118 chain 123961 chr16 90338345 + 74133882 74135254 L1PA5 6144 + 4762 6134 14855 1372 chain 1187 chr16 90338345 + 74135294 74135364 MLT2A1 477 + 367 477 40776 30 3 43 37 chain 12546 chr16 90338345 + 74157346 74157483 L1PA5 6144 + 5852 5989 65906 137 chain 13752 chr16 90338345 + 74157483 74157637 L1PA5 6144 + 5990 6144 63944 154 chain 29880 chr16 90338345 + 74255532 74255848 AluYb8 318 + 1 317 42150 316 chain 39213 chr16 90338345 + 74279987 74280507 MER41C 542 + 0 542 35206 42 6 8 261 10 31 10 1 0 190 chain 7934 chr16 90338345 + 74499428 74499589 Tigger3a 397 + 139 323 75038 17 0 2 5 2 0 17 40 40 72 0 23 8 chain 183042 chr16 90338345 + 74513360 74515564 L1P2 5180 + 687 2911 10435 5 0 1 90 0 15 140 6 0 74 0 11 61 0 3 298 0 2 52 2 1 760 6 8 115 7 0 588 chain 305030 chr16 90338345 + 74515713 74519495 L1PA7 6471 + 2470 6469 6721 169 1 2 37 7 1 822 2 0 77 0 5 401 7 11 854 0 1 524 6 0 31 6 15 162 2 214 509 3 4 152 2 0 8 chain 6540 chr16 90338345 + 74772697 74772807 Tigger7 736 + 8 119 79196 52 16 13 25 0 4 17 chain 2893 chr16 90338345 + 74777082 74777113 MER58A 224 + 45 76 100909 31 chain 206169 chr16 90338345 + 74808561 74811237 MER4-int 2692 + 1 2680 9497 10 1 0 25 2 0 20 1 2 41 1 0 7 8 9 450 1 0 51 0 1 231 3 8 63 0 1 53 0 2 66 0 1 32 7 4 354 17 22 130 0 1 105 1 2 172 0 1 140 1 0 90 6 0 35 0 2 130 0 1 15 4 0 7 2 1 104 0 1 264 4 3 22 chain 33120 chr16 90338345 + 74811256 74811690 MER4A1 472 + 0 458 39422 247 7 28 95 9 12 76 chain 24440 chr16 90338345 + 74856948 74857254 AluSp 311 + 5 311 50113 306 chain 4092 chr16 90338345 + 74868904 74868955 MER21C 908 + 521 572 90839 51 chain 6911 chr16 90338345 + 74910688 74910774 MER85 139 + 0 88 77917 68 0 2 18 chain 5665 chr16 90338345 + 74920690 74920760 MER47A 366 + 282 352 82490 70 chain 8041 chr16 90338345 + 74928966 74929075 L1MA3 4352 + 3329 3437 74776 52 1 0 21 0 1 4 1 0 30 chain 4294 chr16 90338345 + 74968377 74968426 MLT1E3 631 + 534 583 89547 49 chain 25420 chr16 90338345 + 75116954 75117366 MER4D1 891 + 7 409 48600 43 0 1 61 8 9 15 2 1 54 16 0 11 0 2 52 0 5 46 1 0 14 29 28 60 chain 29585 chr16 90338345 + 75118775 75119198 MER4A1 472 + 2 472 42500 12 0 2 6 1 2 9 1 0 62 0 1 129 3 39 132 10 18 58 chain 151201 chr16 90338345 + 75125634 75129372 MER4-int 2692 + 582 2689 12276 89 3 11 32 329 6 39 588 4 110 23 17 28 0 1 264 12 15 20 32 0 23 9 1 8 377 0 193 0 1 33 1 6 24 6 1 9 0 2 165 1 0 77 1 2 19 1 0 55 4 8 106 1 0 199 7 6 116 0 1 122 7 1 7 315 0 92 0 3 191 chain 32764 chr16 90338345 + 75129407 75129829 MER4A1 472 + 28 472 39704 187 11 33 224 chain 4806 chr16 90338345 + 75143001 75143059 MER65C 458 + 400 458 86674 58 chain 3305 chr16 90338345 + 75165104 75165275 MER58B 340 + 167 330 96976 35 116 108 20 chain 22332 chr16 90338345 + 75183035 75183778 L1MA8 2339 + 1650 2095 53361 23 18 20 50 6 8 89 4 0 49 9 13 22 11 7 14 363 65 85 chain 6648 chr16 90338345 + 75189840 75190074 MER83C 372 + 0 277 78821 17 137 180 80 chain 5291 chr16 90338345 + 75284777 75284850 MER34 540 + 0 74 84241 23 1 2 49 chain 11372 chr16 90338345 + 75364512 75364812 Charlie1b 519 + 138 428 67968 25 84 72 5 0 1 40 1 0 43 2 0 27 6 0 6 19 29 42 chain 24983 chr16 90338345 + 75393502 75393767 AluYb8 318 + 53 318 49313 265 chain 43379 chr16 90338345 + 75556523 75557111 LTR66 600 + 0 599 32523 20 1 0 13 1 7 129 0 4 113 9 7 119 8 0 60 2 1 9 0 13 104 chain 48015 chr16 90338345 + 75632769 75633343 LTR22 571 + 0 571 30291 344 0 1 105 4 0 121 chain 93733 chr16 90338345 + 75665122 75667009 L1PBa 3878 + 1160 2456 19077 36 7 8 19 6 5 224 0 2 44 0 1 28 1 0 25 18 19 34 0 12 5 310 0 208 5 6 41 0 1 198 301 0 49 0 2 11 0 1 317 chain 9264 chr16 90338345 + 75678297 75678470 MER49 923 + 301 478 71991 80 44 48 49 chain 22023 chr16 90338345 + 75680370 75680823 LOR1-int 1871 + 90 553 53803 74 49 51 13 18 19 9 6 0 28 0 1 19 0 5 52 47 56 23 2 0 113 chain 479567 chr16 90338345 + 75719124 75724651 L1PA4 6152 + 7 5517 3644 118 20 6 12 10 24 1694 0 1 866 1 0 449 1 0 316 0 4 190 0 2 1070 22 0 758 chain 9971 chr16 90338345 + 75762083 75762210 MSTC 436 + 18 146 70481 110 0 1 17 chain 238236 chr16 90338345 + 75873697 75876283 L1PA2 6032 + 3447 6032 8515 2323 1 0 262 chain 17388 chr16 90338345 + 75879610 75879839 L1PA8 5853 + 5624 5849 59370 54 12 10 52 2 1 19 1 0 89 chain 36955 chr16 90338345 + 75955800 75956253 L1PA7 6471 + 6003 6457 36769 135 0 1 318 chain 24938 chr16 90338345 + 75960802 75961153 THE1B 368 + 0 368 49371 44 0 15 49 1 2 27 1 5 24 10 6 4 0 1 191 chain 19889 chr16 90338345 + 76043592 76043827 THE1A 353 + 0 234 56546 109 2 1 124 chain 14432 chr16 90338345 + 76045848 76046030 L1PB3 3668 + 3295 3476 62988 96 1 0 85 chain 8104 chr16 90338345 + 76069979 76070079 MER4A1 472 + 14 114 74633 10 0 1 52 1 0 37 chain 26116 chr16 90338345 + 76093377 76093695 L1PA7 6471 + 6150 6469 47544 162 4 5 152 chain 89381 chr16 90338345 + 76104160 76105171 LTR13 1007 + 0 1007 19783 305 1 0 399 3 1 107 1 0 195 chain 22844 chr16 90338345 + 76247036 76247443 L1MA5A 2387 + 1340 1736 52599 26 7 4 11 16 9 59 0 2 5 11 9 70 1 0 20 0 4 6 5 4 53 24 21 93 chain 46133 chr16 90338345 + 76298987 76299519 L1PA4 6152 + 4982 5515 30994 73 8 5 238 0 4 213 chain 15761 chr16 90338345 + 76300360 76300547 L1PA7 6471 + 6269 6459 61335 43 0 2 66 0 1 78 chain 43844 chr16 90338345 + 76326457 76326945 L1PA4 6152 + 5650 6137 32221 248 1 0 239 chain 10082 chr16 90338345 + 76334064 76334176 L1PA4 6152 + 6024 6136 70233 112 chain 5828 chr16 90338345 + 76346002 76346072 MLT1A 405 + 285 355 81792 70 chain 42871 chr16 90338345 + 76368334 76368832 L1PA7 6471 + 5969 6470 32851 167 0 3 312 0 1 14 1 0 4 chain 27026 chr16 90338345 + 76497508 76497851 L1PA7 6471 + 6123 6468 46231 144 12 14 187 chain 3000 chr16 90338345 + 76498850 76498891 L1MB3 1562 + 1383 1425 99833 13 0 2 23 1 0 4 chain 27917 chr16 90338345 + 76501788 76502084 AluYa5 310 + 0 297 45006 96 0 1 200 chain 164612 chr16 90338345 + 76609852 76611639 L1PA3long 6157 + 2654 4441 11446 1787 chain 9309 chr16 90338345 + 76679807 76680002 L1PB1 5432 + 5258 5427 71892 22 1 0 16 27 12 14 12 9 15 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 97542 chr16 90338345 + 76694048 76695255 L1PA7 6471 + 5133 6373 18580 78 1 0 410 1 3 73 0 3 243 14 41 152 0 2 167 11 11 57 chain 2995 chr16 90338345 + 76708274 76708542 MLT1D 503 + 45 288 99882 21 216 191 31 chain 176107 chr16 90338345 + 76717783 76720534 L1PB1 5432 + 1653 5115 10773 49 0 1052 102 0 1 167 13 12 205 0 1 244 9 1 155 1 2 93 0 6 270 0 1 105 0 7 13 0 1 87 0 1 381 11 16 52 0 14 63 0 23 18 8 0 9 3 11 104 307 0 42 97 18 120 3 0 5 5 1 10 chain 3942 chr16 90338345 + 76720294 76720343 L1PB1 5432 - 468 515 90242 6 2 0 41 chain 70994 chr16 90338345 + 76758420 76759197 L1PA2 6032 + 4180 4957 23762 777 chain 7946 chr16 90338345 + 76822307 76822409 MER2 342 + 116 218 75007 102 chain 17528 chr16 90338345 + 76934010 76934232 L1PA8 5853 + 5635 5853 59203 44 1 0 15 1 0 49 1 0 17 1 0 93 chain 82208 chr16 90338345 + 76952706 76954523 L1PA3long 6157 + 4337 6157 21200 585 0 4 376 1 0 855 chain 43377 chr16 90338345 + 76977451 76978026 MER41A 554 + 0 554 32526 161 1 0 283 1 0 26 13 11 20 26 9 44 chain 43438 chr16 90338345 + 77106455 77106967 MER9a3 513 + 0 513 32484 149 0 1 302 0 4 44 4 0 13 chain 50670 chr16 90338345 + 77116293 77116891 L1PA8A 6298 + 5155 5755 29319 333 0 3 155 2 1 108 chain 30852 chr16 90338345 + 77155613 77156020 L1PA8 5853 + 5450 5853 41266 42 0 2 70 1 0 46 3 1 68 1 0 60 6 5 17 2 1 91 chain 25532 chr16 90338345 + 77189047 77189386 MER4A 717 + 0 354 48434 122 0 3 30 7 8 163 0 11 17 chain 2856 chr16 90338345 + 77204494 77204525 MLT1C 463 + 416 447 101182 31 chain 2822 chr16 90338345 + 77251677 77251709 U2 167 + 0 32 101507 32 chain 5532 chr16 90338345 + 77259328 77259475 Tigger4a 237 + 40 176 83107 42 49 51 34 13 0 9 chain 67683 chr16 90338345 + 77312671 77313453 L1PA5 6144 + 5356 6143 24522 11 0 5 771 chain 45288 chr16 90338345 + 77349164 77349776 PRIMA4_LTR 623 + 0 623 31427 175 0 23 62 1 3 53 2 1 75 21 6 151 1 3 71 chain 6622 chr16 90338345 + 77373515 77373712 L1PB1 5432 + 5257 5427 78892 22 88 66 25 1 0 21 1 0 13 1 0 18 2 0 5 chain 4696 chr16 90338345 + 77400885 77400954 LTR16E1 515 + 420 488 87292 50 8 7 11 chain 89390 chr16 90338345 + 77505991 77507011 L1PA5 6144 + 5098 6140 19777 239 0 1 120 0 16 59 0 3 24 0 2 419 0 2 5 2 0 152 chain 128963 chr16 90338345 + 77522496 77523938 L1PA3long 6157 + 4727 6156 14150 686 0 1 588 1 0 8 14 1 145 chain 503360 chr16 90338345 + 77525003 77530938 L1PA6 6164 + 29 6147 3018 645 0 10 160 2 3 363 1 2 686 0 1 436 0 1 964 1 0 230 1 0 295 2 6 537 0 4 47 0 1 898 0 4 46 0 1 385 0 1 77 1 0 117 0 157 41 chain 14144 chr16 90338345 + 77547147 77547360 L1PA16 3655 + 3363 3572 63388 17 7 3 98 15 15 76 chain 28387 chr16 90338345 + 77573509 77573915 L1PA8 5853 + 5454 5853 44292 110 1 0 45 2 0 66 23 21 44 2 1 19 1 0 93 chain 3727 chr16 90338345 + 77578428 77578501 MLT1I 406 + 106 180 93421 37 1 0 4 10 12 21 chain 27189 chr16 90338345 + 77631824 77632196 THE1B 368 + 0 368 45986 159 1 0 10 16 15 15 2 0 169 chain 3125 chr16 90338345 + 77659523 77659560 THE1D 372 + 334 372 98581 4 0 1 33 chain 3794 chr16 90338345 + 77660813 77660888 L1MC1 2226 + 1987 2047 92893 6 2 0 41 14 1 12 chain 15098 chr16 90338345 + 77662103 77662329 LTR10E 629 + 4 234 62159 14 0 1 33 12 10 28 7 10 64 0 2 68 chain 19002 chr16 90338345 + 77667109 77667512 MSTA 426 + 7 418 57548 89 13 18 15 1 0 15 8 12 31 109 108 70 0 1 52 chain 3231 chr16 90338345 + 77750201 77750261 LTR16C 481 + 145 206 97661 24 13 14 23 chain 16381 chr16 90338345 + 77826054 77826227 AluYa5 310 + 129 302 60542 173 chain 38824 chr16 90338345 + 77848754 77849200 L1PA7 6471 + 6024 6470 35486 446 chain 19984 chr16 90338345 + 77855753 77856012 AluSc 308 + 16 277 56403 212 7 9 40 chain 6414 chr16 90338345 + 77925150 77925289 MER96 175 - 10 175 79626 61 15 36 25 22 27 16 chain 26763 chr16 90338345 + 77938427 77938804 MSTA 426 + 28 426 46595 71 1 20 15 16 25 48 4 0 29 3 0 190 chain 24191 chr16 90338345 + 77993762 77994072 MER41C 542 + 0 314 50509 49 0 1 183 0 3 78 chain 35541 chr16 90338345 + 78000300 78000813 LTR12F 595 + 0 595 37690 89 1 0 14 0 1 42 4 2 29 0 41 22 18 0 46 0 64 38 6 4 23 1 0 180 chain 18640 chr16 90338345 + 78082435 78082682 L1PA8 5853 + 5610 5853 57951 70 1 0 7 2 1 55 1 0 17 1 0 93 chain 83418 chr16 90338345 + 78111190 78112160 LTR13A 966 + 0 966 20928 853 5 1 112 chain 28711 chr16 90338345 + 78120289 78120594 AluYb8 318 + 1 306 43779 305 chain 5220 chr16 90338345 + 78130227 78130456 MLT1A0 366 + 79 297 84587 44 133 125 24 2 3 16 4 0 6 chain 24071 chr16 90338345 + 78266854 78267207 THE1A 353 + 0 353 50697 106 5 4 62 1 0 6 0 1 54 0 1 72 0 11 7 22 11 18 chain 4301 chr16 90338345 + 78307321 78307377 MLT1D 503 + 76 131 89493 4 1 0 51 chain 25545 chr16 90338345 + 78476311 78476594 L1PA5 6144 + 5839 6122 48414 283 chain 9002 chr16 90338345 + 78554292 78554416 MER85 139 + 5 139 72549 84 4 14 36 chain 29103 chr16 90338345 + 78691800 78692154 THE1A 353 + 0 353 43184 107 6 5 241 chain 18006 chr16 90338345 + 78697386 78697661 L1PB1 5432 + 4449 4726 58646 104 5 4 52 0 4 14 3 0 66 11 13 20 chain 4915 chr16 90338345 + 78743681 78743764 MER51A 677 + 182 254 86087 17 11 0 55 chain 16298 chr16 90338345 + 78754983 78755214 L1PA8 5853 + 5628 5853 60625 28 8 6 20 1 0 6 1 0 52 2 1 19 1 0 93 chain 69915 chr16 90338345 + 78934954 78935749 L1PA5 6144 + 5334 6127 24011 471 1 0 80 1 0 242 chain 82613 chr16 90338345 + 78964122 78965166 THE1A-int 1579 + 0 1044 21101 656 10 15 7 5 0 366 chain 23458 chr16 90338345 + 79044339 79044710 MSTA 426 + 58 426 51653 106 49 47 66 14 13 136 chain 48714 chr16 90338345 + 79051701 79052844 LTR10C 591 + 10 591 30044 305 564 0 195 0 2 79 chain 13598 chr16 90338345 + 79052415 79052570 L1PA2 6032 + 5502 5657 64167 155 chain 25961 chr16 90338345 + 79126311 79126680 THE1D 372 + 0 372 47776 74 3 0 6 6 10 89 12 14 179 chain 39217 chr16 90338345 + 79141008 79141479 MER4A1 472 + 0 472 35203 21 0 1 450 chain 356895 chr16 90338345 + 79222104 79226532 L1PA7 6471 + 2088 6466 5837 30 16 0 334 40 0 85 1 2 84 8 10 11 0 1 30 0 2 11 0 1 60 0 3 334 5 10 4 1 0 138 0 3 282 1 0 24 5 9 713 0 1 405 1 0 81 2 1 327 0 1 309 15 1 227 4 1 652 0 1 137 0 1 43 0 1 8 chain 454614 chr16 90338345 + 79240529 79246215 L1PA7 6471 + 787 6468 4271 32 2 0 379 0 5 66 27 28 936 1 2 165 0 4 4 1 0 128 4 2 5 0 2 88 12 0 39 2 1 423 0 4 228 10 11 20 1 0 125 1 2 5 1 0 12 5 4 22 37 20 21 4 7 692 0 1 482 6 5 322 0 1 511 8 12 16 2 6 73 0 2 768 chain 7072 chr16 90338345 + 79264453 79264545 5S 121 + 0 91 77362 47 1 0 44 chain 42668 chr16 90338345 + 79292579 79293197 MER41B 635 + 1 615 32965 20 0 1 97 9 10 152 0 1 21 16 8 35 1 0 10 0 1 104 11 10 94 5 7 43 chain 3708 chr16 90338345 + 79321330 79321371 MER53 195 + 25 66 93556 41 chain 32609 chr16 90338345 + 79409930 79410357 MER57A1 433 + 0 429 39857 241 6 7 34 0 1 146 chain 2944 chr16 90338345 + 79423537 79423570 MER58A 224 + 47 80 100466 33 chain 24085 chr16 90338345 + 79454829 79455111 AluSp 311 + 15 297 50670 282 chain 16640 chr16 90338345 + 79534544 79534749 L1PA5 6144 + 5941 6144 60225 191 3 1 11 chain 4951 chr16 90338345 + 79655575 79655916 MLT1D 503 + 9 370 85886 11 2 3 20 81 90 35 161 171 31 chain 3331 chr16 90338345 + 79668303 79668341 MADE1 96 + 47 85 96749 38 chain 33692 chr16 90338345 + 79696633 79696999 L1PA2 6032 + 5663 6032 38930 351 0 3 15 chain 56509 chr16 90338345 + 79755700 79756320 L1PA3long 6157 + 5537 6157 27424 620 chain 23002 chr16 90338345 + 80047521 80047912 L1PA15 4387 + 3928 4309 52358 4 1 0 167 12 11 17 22 21 37 1 0 21 4 0 10 2 1 26 0 2 15 14 11 38 chain 6977 chr16 90338345 + 80098894 80099213 MSTB1 431 + 81 401 77680 37 215 216 67 chain 465484 chr16 90338345 + 80219706 80225046 L1PA4 6152 + 12 5353 3976 42 9 10 380 24 18 118 1 0 482 0 2 370 1 0 1513 0 2 392 1 2 299 1 4 1707 chain 84462 chr16 90338345 + 80240232 80241249 L1PA7 6471 + 4706 5718 20721 14 0 1 81 1 0 153 8 0 63 0 1 284 3 2 316 0 3 94 chain 105041 chr16 90338345 + 80242579 80243984 SVA_F 1814 + 9 1274 17682 225 0 7 457 0 40 145 47 0 52 5 1 11 0 15 206 151 0 106 chain 3196 chr16 90338345 + 80243410 80243453 SVA_F 1814 + 888 996 56792 26 1 66 16 chain 12684 chr16 90338345 + 80243729 80243878 SVA_D 2077 + 941 1084 18982 6 4 0 87 2 4 45 4 0 1 chain 69633 chr16 90338345 + 80243984 80244802 SVA_D 2077 + 1190 2056 18982 150 1 0 12 0 49 655 chain 7540 chr16 90338345 + 80467952 80468084 MLT1A 405 + 287 390 76030 9 37 0 19 0 8 67 chain 29272 chr16 90338345 + 80490493 80490839 L1PA7 6471 + 6120 6464 42934 232 0 1 106 3 0 5 chain 15635 chr16 90338345 + 80530649 80530872 HERVL-int 5654 + 5289 5502 61491 32 7 6 90 10 0 11 0 1 73 chain 9529 chr16 90338345 + 80581848 80581978 MER4B 649 + 139 271 71412 8 0 1 89 4 5 29 chain 14440 chr16 90338345 + 80582189 80582575 L1PB3 3668 + 3294 3595 62978 83 41 42 56 80 6 14 4 0 7 2 1 25 8 6 32 8 4 12 2 1 12 chain 41782 chr16 90338345 + 80584020 80584703 MER4B 649 + 0 641 33501 112 23 36 86 7 8 74 0 1 47 5 0 34 0 1 19 76 25 121 5 4 62 1 0 11 chain 32857 chr16 90338345 + 80590134 80590512 L1PA7 6471 + 6083 6461 39624 378 chain 38143 chr16 90338345 + 80634163 80634649 L1PA6 6164 + 5670 6160 35956 29 0 2 408 0 4 41 2 0 6 chain 149565 chr16 90338345 + 80635267 80637110 L1PA7 6471 + 4509 6367 12385 145 20 24 643 0 2 21 8 12 264 3 1 50 6 11 160 0 1 110 1 2 412 chain 5078 chr16 90338345 + 80642050 80642111 L1MA2 4263 + 32 97 85255 35 0 4 26 chain 127428 chr16 90338345 + 80644725 80646151 L1PA5 6144 + 4719 6143 14364 574 0 5 692 7 0 153 chain 232851 chr16 90338345 + 80647476 80650795 L1MA2 4263 + 703 4075 8668 18 0 1 8 2 0 65 1 5 120 4 8 33 0 6 76 10 15 17 3 0 35 0 3 56 0 15 182 0 1 40 0 1 46 0 3 107 0 3 81 0 1 192 0 3 107 3 12 7 15 0 79 10 17 167 0 1 4 0 1 8 0 1 35 2 0 6 0 2 5 0 3 218 0 2 10 2 0 20 4 8 87 1 0 53 5 0 77 3 18 115 3 9 249 7 8 66 10 5 28 0 2 291 2 1 25 3 2 11 0 4 54 1 0 60 10 5 66 16 13 37 0 1 5 1 0 107 2 1 9 1 0 92 7 0 17 chain 22968 chr16 90338345 + 80670186 80670560 THE1C 375 + 0 375 52411 68 0 14 9 27 12 36 1 0 46 2 3 25 7 10 124 11 10 18 chain 136223 chr16 90338345 + 80677776 80679267 L1PA3long 6157 + 4661 6152 13416 1491 chain 318119 chr16 90338345 + 80727089 80730717 L1HS 6032 + 6 3631 6441 250 1 0 317 1 0 325 1 0 160 5 8 591 4 0 306 0 1 1667 chain 39850 chr16 90338345 + 80749760 80750230 L1PA5 6144 + 5657 6138 34773 4 0 1 143 1 2 291 0 9 31 chain 4501 chr16 90338345 + 80755867 80755923 L1MC2 1988 + 1932 1987 88313 14 1 0 41 chain 4305 chr16 90338345 + 80765892 80765950 L1MB8 1703 + 1430 1486 89462 5 2 0 51 chain 162126 chr16 90338345 + 80785134 80787080 L1PA7 6471 + 4480 6469 11604 73 1 0 250 0 2 815 2 1 370 0 44 272 0 1 150 2 0 11 chain 21684 chr16 90338345 + 80823039 80823343 MER1A 529 + 223 529 54248 174 1 4 54 20 19 55 chain 4985 chr16 90338345 + 80874949 80875013 L1MD2 1676 + 1352 1416 85721 64 chain 3963 chr16 90338345 + 80918749 80918796 MLT1C 463 + 58 105 91677 47 chain 236724 chr16 90338345 + 80956030 80959498 L1PA13 3608 + 116 3537 8551 20 7 4 23 70 55 68 7 5 123 0 7 7 1 0 12 7 5 16 11 8 12 1 0 11 11 9 15 2 0 18 2 1 95 2 0 259 6 15 18 0 8 100 8 7 79 0 4 17 1 2 393 13 3 250 0 3 54 3 6 72 25 15 13 0 2 11 12 17 55 3 4 73 1 0 304 2 1 98 10 11 327 0 1 198 23 10 72 1 0 28 1 0 113 2 0 62 1 0 55 9 6 47 2 0 5 2 0 18 1 0 22 18 16 15 13 6 12 chain 24992 chr16 90338345 + 80983705 80984002 AluSp 311 + 6 303 49291 297 chain 8998 chr16 90338345 + 81089404 81089562 Tigger3c 601 + 331 484 72560 33 7 26 66 0 1 17 25 0 10 chain 4352 chr16 90338345 + 81106732 81106805 MER21C 908 + 814 884 89163 36 12 9 25 chain 16150 chr16 90338345 + 81117698 81117896 MER51B 395 + 11 219 60812 28 0 10 170 chain 3318 chr16 90338345 + 81119266 81119305 MER67C 710 + 631 670 96861 39 chain 4765 chr16 90338345 + 81124006 81124066 MER5A 189 + 6 66 86885 60 chain 25211 chr16 90338345 + 81134729 81135149 LTR2 463 + 94 463 48924 19 63 9 146 6 8 82 20 21 84 chain 3643 chr16 90338345 + 81198299 81198342 MER20 218 + 22 68 94074 34 0 3 9 chain 3406 chr16 90338345 + 81201729 81201770 MIR 256 + 203 244 96016 41 chain 6164 chr16 90338345 + 81234238 81234314 MLT1B 390 + 307 384 80468 51 0 1 25 chain 423621 chr16 90338345 + 81340403 81345659 L1PA7 6471 + 1069 6374 4830 250 0 1 53 13 8 379 1 0 238 0 7 74 0 1 83 3 7 95 1 0 368 4 6 466 0 2 377 1 5 347 1 0 34 1 10 126 0 3 629 0 1 33 1 6 143 0 1 127 0 1 77 8 0 78 0 1 85 0 4 16 0 1 67 0 3 125 0 2 29 0 1 34 0 5 142 2 1 77 0 2 382 0 5 220 2 3 64 chain 18338 chr16 90338345 + 81346453 81346691 MER1B 344 + 100 344 58315 166 13 19 59 chain 20322 chr16 90338345 + 81421992 81423176 L1PB1 5432 + 4890 5281 55984 31 297 0 76 307 0 55 229 51 11 1 0 24 1 0 9 1 0 11 5 1 10 11 9 39 8 7 12 1 0 45 chain 3166 chr16 90338345 + 81439859 81439893 MER63D 473 + 158 192 98238 34 chain 19835 chr16 90338345 + 81451105 81451468 THE1B 368 + 0 368 56627 107 2 6 7 2 0 57 87 90 101 chain 4751 chr16 90338345 + 81663413 81663473 L1MC3 1789 + 337 397 86956 60 chain 3299 chr16 90338345 + 81765112 81765172 MLT1B 390 + 146 204 97020 11 3 4 13 1 0 10 2 0 20 chain 28772 chr16 90338345 + 81769532 81769848 AluYa5 310 + 0 310 43669 97 3 0 35 3 0 178 chain 9990 chr16 90338345 + 81796575 81796863 MLT1C 463 + 59 410 70442 46 29 24 34 17 33 11 2 0 14 75 126 47 0 3 13 chain 27192 chr16 90338345 + 81838427 81838774 L1PA8 5853 + 5512 5853 45976 52 1 0 44 2 0 71 1 0 58 9 8 15 1 0 93 chain 21924 chr16 90338345 + 81961925 81962167 7SK 245 + 0 242 53936 242 chain 422857 chr16 90338345 + 81977355 81982424 L1PA3long 6157 + 0 6152 4842 152 0 1 628 0 128 136 0 1 190 324 0 486 1 0 586 4 1276 176 1 0 594 0 4 518 2 1 433 0 4 838 chain 114630 chr16 90338345 + 82008302 82009816 THE1B-int 1605 + 18 1605 16451 206 0 4 40 0 2 127 0 64 8 11 13 168 51 51 455 0 1 448 chain 29445 chr16 90338345 + 82010438 82010870 MER4A1 472 + 0 462 42675 25 1 2 5 1 0 68 5 9 54 0 2 62 1 22 29 4 3 15 7 11 155 chain 85239 chr16 90338345 + 82077836 82079124 L1MA3 4352 + 3019 4303 20582 102 5 0 84 0 19 172 7 8 41 5 0 159 0 1 56 5 23 43 8 8 144 2 0 91 12 11 74 0 2 36 54 27 59 1 0 79 2 0 24 3 2 4 1 0 15 chain 47259 chr16 90338345 + 82135966 82136617 PABL_A 660 + 0 642 30552 235 5 4 29 19 19 167 8 0 188 chain 552701 chr16 90338345 + 82139255 82145258 L1PA2 6032 + 12 6032 570 1582 1 0 295 0 10 1981 0 4 492 0 4 1652 chain 5224 chr16 90338345 + 82254932 82255005 MER3 215 + 88 177 84565 30 0 6 7 0 10 36 chain 3991 chr16 90338345 + 82309868 82309919 MADE1 96 + 45 96 91512 51 chain 23381 chr16 90338345 + 82336052 82336319 L1PA5 6144 + 3959 4226 51796 267 chain 47928 chr16 90338345 + 82446309 82447217 L1PB1 5432 + 4626 5422 30319 114 11 10 73 1 4 91 0 3 148 0 8 26 1 0 11 86 0 20 1 0 12 1 0 10 2 0 3 1 0 8 2 0 23 11 4 26 45 43 17 1 0 15 26 13 19 2 0 4 1 0 10 7 5 24 1 0 21 1 0 13 1 0 18 chain 31836 chr16 90338345 + 82500203 82500585 L1PA2 6032 + 5651 6032 40465 4 1 0 220 7 0 7 1 8 142 chain 27719 chr16 90338345 + 82511630 82511942 L1PA2 6032 + 5720 6032 45291 312 chain 3944 chr16 90338345 + 82511971 82512014 MLT2A2 560 + 517 560 91805 43 chain 2906 chr16 90338345 + 82530530 82530563 HSMAR1 1287 + 1 34 100795 33 chain 19630 chr16 90338345 + 82559033 82559364 THE1C 375 + 0 329 56879 88 1 0 91 0 2 5 43 38 54 14 16 35 chain 2893 chr16 90338345 + 82751644 82751675 MER45C 884 + 726 757 100907 31 chain 4613 chr16 90338345 + 82790904 82790955 LTR17 781 + 0 51 87732 51 chain 7410 chr16 90338345 + 82936355 82936447 MER1B 344 + 158 250 76364 92 chain 3541 chr16 90338345 + 83072799 83072845 MER5A1 166 + 83 128 94934 29 1 0 16 chain 31622 chr16 90338345 + 83135592 83136159 L1PB1 5432 + 4883 5420 40645 167 8 13 40 7 4 7 1 0 20 2 1 11 1 0 10 2 0 3 2 0 8 2 0 53 19 17 44 2 1 17 21 9 15 28 23 26 1 0 20 1 0 12 1 0 16 chain 18062 chr16 90338345 + 83213743 83214155 LTR12 884 + 0 529 58597 25 1 0 31 15 257 25 121 1 38 2 0 67 6 4 81 chain 36989 chr16 90338345 + 83335522 83335984 LTR2 463 + 0 463 36740 355 22 23 85 chain 15885 chr16 90338345 + 83364816 83365078 L1PA8 5853 + 5600 5853 61175 10 2 0 68 32 27 35 2 1 12 8 7 93 chain 12235 chr16 90338345 + 83453015 83453363 L1PB1 5432 + 5109 5427 66407 5 1 0 24 1 0 9 2 1 10 5 1 8 2 0 53 2 1 10 47 49 14 2 0 8 16 6 19 7 4 15 2 0 24 1 0 20 6 5 9 1 0 18 2 0 5 chain 163401 chr16 90338345 + 83495863 83497665 L1PA2 6032 + 4221 6029 11521 682 1 0 192 0 1 913 0 6 14 chain 11576 chr16 90338345 + 83503953 83504120 L1PA8 5853 + 5688 5853 67614 52 2 1 14 6 5 93 chain 33572 chr16 90338345 + 83540209 83540758 LTR3B_ 500 + 10 499 39023 69 1 0 42 40 41 141 0 2 43 3 4 55 0 2 21 64 0 37 1 0 32 chain 12259 chr16 90338345 + 83609135 83609336 MER30 238 + 0 229 66354 14 31 27 59 0 28 25 3 7 69 chain 4115 chr16 90338345 + 83625007 83625111 MER63A 208 + 90 202 90680 32 19 20 19 15 22 19 chain 567437 chr16 90338345 + 83637252 83643296 L1HS 6032 + 2 6032 30 59 15 0 11 0 1 5959 chain 15854 chr16 90338345 + 83756444 83756667 MER30 238 + 0 238 61223 92 3 0 14 5 0 7 1 24 101 chain 40740 chr16 90338345 + 83806615 83807159 MER41A 554 + 0 554 34129 87 6 5 4 0 1 303 0 3 43 0 3 20 1 6 38 2 0 28 0 1 12 chain 143271 chr16 90338345 + 83867842 83870031 L1PA8 5853 + 3993 5853 12836 807 0 1 23 0 1 182 0 2 60 351 28 148 12 13 306 1 0 44 2 0 70 2 1 14 11 10 36 3 2 19 1 0 86 4 0 7 chain 27047 chr16 90338345 + 84140821 84141105 AluYd8 298 + 0 284 46204 284 chain 28618 chr16 90338345 + 84212292 84212666 THE1C 375 + 7 370 43920 342 1 0 6 12 2 13 chain 22950 chr16 90338345 + 84258221 84258684 LTR12F 595 + 0 595 52446 69 1 2 20 95 147 34 14 78 42 1 0 18 14 27 46 0 2 102 0 1 7 chain 4012 chr16 90338345 + 84327093 84327144 MER6C 202 - 0 53 91364 44 0 2 7 chain 3434 chr16 90338345 + 84327498 84327537 MER6C 202 + 83 122 95784 39 chain 33600 chr16 90338345 + 84335127 84335714 L1M1 2793 + 823 1351 38998 7 2 0 9 1 0 54 31 28 27 39 0 38 21 18 176 1 0 71 14 9 6 4 0 17 2 1 67 chain 3230 chr16 90338345 + 84346203 84346244 MER5A 189 + 125 166 97666 41 chain 6851 chr16 90338345 + 84361173 84361377 L1MC2 1988 + 1602 1800 78138 35 1 0 34 103 98 31 chain 14418 chr16 90338345 + 84376469 84376649 MER30 238 + 47 237 63009 61 5 15 114 chain 26866 chr16 90338345 + 84409126 84409448 L1PA6 6164 + 5832 6153 46449 160 1 0 161 chain 200142 chr16 90338345 + 84456370 84458508 L1HS 6032 + 3895 6032 9714 1992 1 0 145 chain 25085 chr16 90338345 + 84471633 84472006 THE1C 375 + 0 375 49143 40 0 5 34 9 6 57 8 12 26 7 6 164 1 0 6 2 0 19 chain 34153 chr16 90338345 + 84475621 84476039 LTR3A 482 + 0 430 38597 125 0 3 27 8 17 258 chain 24327 chr16 90338345 + 84501872 84502156 AluSp 311 + 10 294 50294 284 chain 6173 chr16 90338345 + 84512415 84512491 LTR51 675 + 0 77 80441 69 0 1 7 chain 15086 chr16 90338345 + 84609611 84609965 THE1C 375 + 0 375 62167 15 7 5 27 87 110 22 0 2 5 37 35 154 chain 12957 chr16 90338345 + 84675326 84675523 Tigger2a 444 + 206 406 65170 18 2 3 49 14 16 114 chain 3721 chr16 90338345 + 84682701 84682746 MLT2B1 522 + 477 522 93468 45 chain 29364 chr16 90338345 + 84780594 84780980 LTR12F 595 + 0 480 42792 102 1 2 42 2 0 20 6 99 165 0 2 48 chain 27353 chr16 90338345 + 84781613 84782044 MLT2A2 560 + 0 553 45760 180 1 0 16 17 22 73 0 1 6 11 119 41 11 19 39 10 11 26 chain 24369 chr16 90338345 + 84934997 84935281 AluSp 311 + 7 288 50212 135 3 0 146 chain 5800 chr16 90338345 + 85023057 85023141 MLT1D 503 + 331 436 81919 55 4 25 25 chain 3753 chr16 90338345 + 85377451 85377495 MIR 256 + 70 114 93212 44 chain 5107 chr16 90338345 + 85592730 85592795 MIR 256 + 52 118 85126 4 0 1 61 chain 23041 chr16 90338345 + 85671212 85671457 AluYa5 310 + 54 299 52304 245 chain 12965 chr16 90338345 + 85737887 85738071 MER30 238 + 37 235 65159 61 0 1 9 4 11 31 4 10 75 chain 32286 chr16 90338345 + 85837577 85838059 L1PA16 3655 + 3145 3603 40122 53 0 1 5 3 1 84 14 12 278 3 0 6 14 0 7 4 0 11 chain 15716 chr16 90338345 + 85864327 85864543 L1PB2 3958 + 3626 3838 61387 55 1 0 73 2 0 20 7 6 58 chain 149596 chr16 90338345 + 85876474 85878172 L1PA5 6144 + 4440 6144 12381 854 0 1 419 0 1 171 1 6 140 1 0 112 chain 38291 chr16 90338345 + 85970785 85971641 MER41A 554 + 0 554 35846 87 8 9 88 8 9 233 0 4 49 330 22 53 chain 21663 chr16 90338345 + 86010021 86010318 L1PA8 5853 + 5562 5853 54276 47 2 0 69 2 1 9 1 0 52 2 1 19 1 0 93 chain 3040 chr16 90338345 + 86083661 86083695 LTR16C 481 + 431 465 99417 34 chain 9067 chr16 90338345 + 86166427 86166854 MLT1G1-int 1178 + 732 1116 72404 4 0 1 67 108 88 37 177 153 34 chain 52976 chr16 90338345 + 86175196 86175775 L1PA5 6144 + 5547 6126 28584 579 chain 543198 chr16 90338345 + 86233299 86239297 L1PA3long 6157 + 4 6146 1124 148 0 1 211 0 1 411 0 128 1175 0 3 243 0 4 440 0 1 925 1 0 1105 0 7 1339 chain 548960 chr16 90338345 + 86262173 86268197 L1PA2 6032 + 8 6031 811 244 5 4 55 2 0 614 0 1 658 0 1 1464 1 0 1695 0 1 1286 chain 39576 chr16 90338345 + 86278094 86278525 LTR7Y 441 + 0 431 34977 431 chain 109113 chr16 90338345 + 86278535 86280237 HERVH-int 3825 + 0 3482 17168 190 0 252 42 0 56 30 1 0 10 1 0 4 312 1577 911 7 6 42 37 247 115 chain 39897 chr16 90338345 + 86280840 86281279 LTR7Y 441 + 0 441 34740 38 0 2 401 chain 9835 chr16 90338345 + 86407179 86407359 MER30 238 + 47 238 70747 60 36 49 37 3 0 17 0 1 27 chain 8843 chr16 90338345 + 86553822 86553932 LTR12C 1709 + 929 1080 72877 40 0 41 70 chain 12067 chr16 90338345 + 86871219 86871427 THE1C 375 + 0 167 66727 68 0 4 5 4 0 68 41 0 22 chain 17681 chr16 90338345 + 86871558 86871806 THE1D 372 + 119 372 59029 4 0 1 36 0 1 17 11 14 91 0 1 56 1 0 32 chain 4476 chr16 90338345 + 86886690 86886741 MER58A 224 + 26 77 88461 51 chain 18433 chr16 90338345 + 86903841 86904212 MSTA 426 + 0 414 58188 24 4 5 64 35 59 49 58 56 39 1 21 97 chain 25689 chr16 90338345 + 87011998 87012295 L1PA6 6164 + 5866 6162 48189 144 1 0 152 chain 4090 chr16 90338345 + 87035240 87035285 MER58A 224 + 47 92 90854 45 chain 9902 chr16 90338345 + 87152185 87152311 MSTB 430 + 261 387 70609 126 chain 31938 chr16 90338345 + 87155430 87155856 L1PA8 5853 + 5435 5853 40386 111 0 1 17 1 0 46 2 0 68 2 1 13 5 3 45 2 1 16 1 0 3 1 0 93 chain 4411 chr16 90338345 + 87163809 87163855 LTR33B 472 + 55 101 88837 46 chain 56435 chr16 90338345 + 87208777 87209456 L1PA7 6471 + 5773 6456 27444 211 1 8 283 15 12 169 chain 16067 chr16 90338345 + 87287751 87287992 MER30 238 + 0 238 60938 73 29 30 57 4 0 78 chain 3413 chr16 90338345 + 87448156 87448195 Tigger4b 360 + 13 52 95978 39 chain 29313 chr16 90338345 + 87542829 87543294 MER1A 529 + 42 511 42858 174 25 26 171 49 52 46 chain 3854 chr16 90338345 + 87551610 87551756 MLT1C 463 + 63 223 92471 42 1 2 13 74 87 16 chain 114229 chr16 90338345 + 87718376 87719682 SVA_B 1603 + 0 1602 16516 19 0 28 146 0 144 479 0 40 70 0 78 47 0 5 390 1 2 154 chain 15024 chr16 90338345 + 87782119 87782402 MER51B 395 + 67 261 62238 22 88 0 156 1 0 16 chain 33588 chr16 90338345 + 87816896 87817307 MER41A 554 + 13 427 39011 28 5 7 242 0 1 136 chain 37325 chr16 90338345 + 87940362 87940802 LTR15 485 + 0 443 36533 103 0 1 45 0 2 55 0 1 168 1 0 68 chain 5655 chr16 90338345 + 88180061 88180126 MER41B 635 + 484 549 82538 65 chain 110722 chr16 90338345 + 88218515 88219707 L1PA2 6032 + 3764 4956 16974 1192 chain 25829 chr16 90338345 + 88326110 88326466 THE1B 368 + 0 368 47975 44 0 15 19 1 0 39 0 1 54 4 3 16 10 8 169 chain 5366 chr16 90338345 + 88718093 88718160 L1MB7 1623 + 1062 1132 83870 46 0 3 21 chain 113858 chr16 90338345 + 88851392 88852803 L1P2 5180 + 2 1409 16569 64 1 2 81 1 0 44 2 1 53 1 0 162 0 1 105 1 0 272 1 0 4 4 3 615 chain 48140 chr16 90338345 + 88918866 88919458 LTR10C 591 + 0 582 30242 6 0 4 23 2 0 383 19 6 23 1 0 65 0 2 70 chain 3830 chr16 90338345 + 88946332 88946383 L1MC2 1988 + 1553 1610 92643 8 0 6 43 chain 5846 chr16 90338345 + 89345524 89345597 MLT1A1 405 + 307 381 81712 4 0 1 69 chain 49302 chr16 90338345 + 89362550 89363146 LTR10C 591 + 10 591 29832 403 22 9 23 1 0 66 1 0 80 chain 11656 chr16 90338345 + 89363350 89363479 L1PA4 6152 + 6016 6151 67467 112 0 6 17 chain 49977 chr16 90338345 + 89391725 89392331 LTR10C 591 + 0 591 29570 413 22 9 23 1 0 66 1 0 80 chain 28413 chr16 90338345 + 89423747 89424155 LTR71A 459 + 0 387 44250 192 50 29 166 chain 53385 chr16 90338345 + 89435020 89435691 LTR12 884 + 0 884 28438 55 0 107 62 0 4 148 2 0 10 0 1 188 0 103 206 chain 138211 chr16 90338345 + 89462043 89463693 SVA_D 2077 + 0 2075 13248 18 2 0 187 0 11 507 0 3 36 3 0 38 0 40 43 6 6 15 2 0 8 3 43 31 7 0 17 1 0 31 2 4 65 1 352 268 0 3 339 10 0 10 chain 34547 chr16 90338345 + 89607503 89608008 MER9B 498 + 12 493 38322 33 0 1 167 0 3 46 8 11 132 58 26 11 0 1 50 chain 36104 chr16 90338345 + 89684909 89685375 MER9a3 513 + 0 510 37338 18 0 2 80 10 29 145 15 37 124 0 1 74 chain 8816 chr16 90338345 + 89714243 89714352 MER30 238 + 126 238 72960 70 0 3 39 chain 88515 chr16 90338345 + 89752453 89753458 LTR13 1007 + 0 1007 19940 924 0 2 81 chain 9902 chr16 90338345 + 89758342 89758474 MLT2A1 477 + 0 134 70612 102 6 8 24 chain 5412 chr16 90338345 + 89802723 89802798 L1MA5A 2387 + 2071 2145 83645 38 1 0 36 chain 75957 chr16 90338345 + 89818649 89819594 LTR13A 966 + 0 966 22592 68 0 4 34 0 4 33 4 10 105 3 4 237 0 5 196 8 9 257 chain 24079 chr16 90338345 + 89888312 89888604 AluSp 311 + 7 298 50683 125 2 0 76 0 1 89 chain 42412 chr16 90338345 + 89947195 89947710 MER9a2 513 + 0 513 33122 438 9 7 68 chain 29634 chr16 90338345 + 90051130 90051572 MER1A 529 + 70 524 42450 12 19 14 54 0 1 98 1 0 38 0 9 128 0 3 19 20 25 53 chain 3695 chr16 90338345 + 90057010 90057052 LTR10D 510 + 468 510 93643 42 chain 21130 chr16 90338345 + 90074601 90074893 AluSp 311 + 10 295 54971 113 0 4 8 17 7 139 2 1 13 chain 47719 chr16 90338345 + 90099295 90099888 LTR10C 591 + 0 591 30389 15 0 5 489 8 0 60 1 2 20 chain 20561 chr16 90338345 + 90135050 90135333 AluSp 311 + 2 286 55693 51 12 14 166 7 6 47 chain 25169 chr16 90338345 + 90158599 90159000 MER1A 529 + 90 490 49007 10 5 0 14 9 10 170 10 12 137 27 28 19 chain 74138 chr16_KI270728v1_random 1872759 + 6888 7759 LTR13A 966 + 7 878 23052 78 1 0 43 0 1 749 chain 491946 chr16_KI270728v1_random 1872759 + 99354 105498 L1PA5 6144 + 0 6140 3374 136 10 23 50 3 2 39 1 3 228 1 0 34 10 11 6 0 2 24 0 1 21 0 3 371 24 0 62 0 1 4 1 0 144 13 4 732 1 0 169 9 10 723 6 8 308 0 4 161 0 1 142 2 3 72 1 0 168 3 0 122 11 14 664 6 8 150 1 0 1182 0 1 191 0 3 130 3 0 5 chain 213360 chr16_KI270728v1_random 1872759 + 105655 108159 L1PA6 6164 + 3626 6153 9224 1020 3 0 566 1 0 22 4 6 24 0 20 28 0 4 27 1 2 441 1 2 105 1 0 260 chain 2862 chr16_KI270728v1_random 1872759 + 120725 120757 L1PA15 4387 + 3783 3815 101145 32 chain 3881 chr16_KI270728v1_random 1872759 + 128321 128442 L1PA17 2846 + 924 1057 92286 38 0 7 7 59 64 17 chain 293880 chr16_KI270728v1_random 1872759 + 143950 149627 L1P2 5180 + 2 3863 7016 148 2 1 33 5 2 19 0 1 41 1 0 47 8 9 102 1 0 102 1 0 8 1 0 106 0 1 32 1 0 3 0 51 75 0 15 136 0 6 500 0 1 99 1970 94 80 1 0 7 1 2 305 1 2 177 0 2 171 1 2 1121 1 0 192 1 0 28 15 6 134 chain 26793 chr16_KI270728v1_random 1872759 + 386352 386657 AluYa5 310 + 1 303 46552 296 3 0 6 chain 491946 chr16_KI270728v1_random 1872759 + 411696 417840 L1PA5 6144 + 0 6140 3373 136 10 23 50 3 2 39 1 3 228 1 0 34 10 11 6 0 2 24 0 1 21 0 3 371 24 0 62 0 1 4 1 0 144 13 4 732 1 0 169 9 10 723 6 8 308 0 4 161 0 1 142 2 3 72 1 0 168 3 0 122 11 14 664 6 8 150 1 0 1182 0 1 191 0 3 130 3 0 5 chain 213360 chr16_KI270728v1_random 1872759 + 417997 420501 L1PA6 6164 + 3626 6153 9223 1020 3 0 566 1 0 22 4 6 24 0 20 28 0 4 27 1 2 441 1 2 105 1 0 260 chain 2862 chr16_KI270728v1_random 1872759 + 433067 433099 L1PA15 4387 + 3783 3815 101144 32 chain 3881 chr16_KI270728v1_random 1872759 + 440663 440784 L1PA17 2846 + 924 1057 92285 38 0 7 7 59 64 17 chain 6992 chr16_KI270728v1_random 1872759 + 446085 446170 MER68 562 + 129 214 77632 85 chain 40407 chr16_KI270728v1_random 1872759 + 513867 514330 L1PA2 6032 + 4354 4823 34379 158 1 7 304 chain 39388 chr16_KI270728v1_random 1872759 + 515234 515745 MER9a2 513 + 0 513 35091 40 1 0 6 1 2 12 1 3 450 chain 98705 chr16_KI270728v1_random 1872759 + 562006 563106 L1PA3long 6157 + 5053 6152 18447 836 1 0 263 chain 26793 chr16_KI270728v1_random 1872759 + 659510 659815 AluYa5 310 + 1 303 46551 296 3 0 6 chain 96769 chr16_KI270728v1_random 1872759 + 820585 821674 L1PA2 6032 + 4819 6026 18685 353 0 1 420 1 117 176 0 1 139 chain 52873 chr16_KI270728v1_random 1872759 + 837322 837951 L1PA4 6152 + 4385 5015 28613 591 1 2 37 chain 7234 chr16_KI270728v1_random 1872759 + 898254 898354 LTR15 485 + 389 485 76846 47 4 0 49 chain 79514 chr16_KI270728v1_random 1872759 + 957201 958159 LTR13A 966 + 0 966 21738 42 0 3 38 0 1 360 2 0 145 1 9 70 2 0 298 chain 19279 chr16_KI270728v1_random 1872759 + 1041939 1042250 THE1B 368 + 6 341 57262 35 1 16 112 1 0 29 43 53 90 chain 56186 chr16_KI270728v1_random 1872759 + 1087361 1087981 L1PA2 6032 + 5409 6030 27513 468 1 2 151 chain 161411 chr16_KI270728v1_random 1872759 + 1112686 1114767 L1PA7 6471 + 4384 6457 11652 390 0 1 180 1 0 237 1 5 14 6 5 191 5 0 132 1 2 4 1 0 76 1 0 81 0 1 4 1 0 213 4 0 27 11 11 52 10 10 116 0 1 150 4 0 36 2 0 5 1 5 124 chain 98741 chr16_KI270728v1_random 1872759 + 1153412 1155013 L1P2 5180 + 461 1740 18444 45 11 10 271 1 0 6 1 0 137 322 0 72 0 1 4 2 1 123 0 1 100 0 1 213 1 0 12 2 3 38 1 2 239 chain 231752 chr16_KI270728v1_random 1872759 + 1171720 1174631 L1PA7 6471 + 3535 6459 8697 742 6 8 125 0 1 608 10 1 198 4 0 63 1 0 48 2 5 258 0 10 21 0 5 65 2 1 6 0 2 94 1 5 427 0 1 230 chain 191737 chr16_KI270728v1_random 1872759 + 1280902 1283104 L1PA5 6144 + 2841 5044 10037 33 4 0 102 0 1 518 0 1 1324 0 2 76 0 1 145 chain 3293 chr16_KI270728v1_random 1872759 + 1287194 1287229 MLT2C1 407 + 45 80 97081 35 chain 3374 chr16_KI270728v1_random 1872759 + 1291881 1291916 MER52C 1267 + 879 914 96362 35 chain 4048 chr16_KI270728v1_random 1872759 + 1492224 1492267 MADE1 96 + 53 96 91098 43 chain 162408 chr16_KI270728v1_random 1872759 + 1497846 1499989 L1P2 5180 + 597 2743 11585 142 22 1 47 0 15 238 3 4 6 1 0 132 0 3 176 20 19 65 5 6 45 12 13 602 0 2 94 0 2 117 0 1 416 chain 277996 chr16_KI270728v1_random 1872759 + 1500000 1503321 L1PA7 6471 + 3068 6468 7490 321 10 70 545 7 6 253 11 18 204 1 2 99 1 9 360 2 1 463 0 1 4 0 1 197 0 3 307 1 0 22 0 1 513 chain 295420 chr16_KI270728v1_random 1872759 + 1680358 1686044 L1P2 5180 + 2 3870 6964 148 2 1 33 5 2 19 0 1 41 1 0 47 8 9 102 1 0 102 1 0 8 1 0 106 0 1 32 1 0 3 0 51 75 0 15 136 0 6 500 0 1 104 1965 89 80 1 0 7 1 2 305 1 2 350 1 2 1121 1 0 192 1 0 28 15 6 141 chain 38590 chr16_KI270728v1_random 1872759 + 1769385 1769846 LTR5_Hs 974 + 438 928 35646 221 0 1 9 0 1 143 0 19 63 0 8 25 chain 4272 chr16_KI270728v1_random 1872759 + 1813261 1813317 L1MB7 1623 + 1365 1420 89684 5 1 0 50 chain 65799 chr16_KI270728v1_random 1872759 + 1830589 1831334 L1PA5 6144 + 5399 6144 25003 745 chain 84988 chr17 83257441 + 86910 87973 MER11C 1089 + 0 1089 20621 220 0 5 39 12 15 40 1 18 49 0 1 199 12 13 477 1 0 13 chain 45131 chr17 83257441 + 185830 186343 MER9a2 513 + 0 513 31507 513 chain 38809 chr17 83257441 + 224680 225126 L1PA5 6144 + 5700 6144 35495 432 3 1 11 chain 18453 chr17 83257441 + 268204 268510 Tigger2 2703 + 2363 2629 58162 18 45 0 186 11 13 34 0 3 12 chain 66560 chr17 83257441 + 271994 272753 L1PA5 6144 + 5372 6130 24803 161 0 1 497 3 1 98 chain 6361 chr17 83257441 + 348162 348529 L1MC2 1988 + 1602 1979 79806 9 4 0 44 193 212 38 32 29 12 8 7 4 1 0 22 chain 108960 chr17 83257441 + 361410 362697 LTR12C 1709 + 0 1709 17187 792 9 325 29 0 1 77 0 4 215 0 101 165 chain 28403 chr17 83257441 + 565921 566222 AluYa5 310 + 0 300 44266 132 1 0 168 chain 136481 chr17 83257441 + 571510 573022 SVA_D 2077 + 7 2056 13392 18 5 0 848 0 535 129 4 11 508 chain 121783 chr17 83257441 + 592962 594327 L1PA3long 6157 + 4799 6156 15215 412 0 1 833 12 4 103 1 0 4 chain 159505 chr17 83257441 + 597949 599774 SVA_D 2077 + 12 2075 11780 189 0 11 622 40 0 44 0 183 152 4 0 99 0 98 655 10 0 10 chain 2442 chr17 83257441 + 736258 736306 MER5A 189 + 137 186 103955 28 7 8 13 chain 23375 chr17 83257441 + 758652 758947 AluSp 311 + 4 310 51806 30 12 23 253 chain 13307 chr17 83257441 + 966195 966722 MER30 238 + 0 232 64606 18 12 13 76 9 22 33 313 4 66 chain 81205 chr17 83257441 + 981789 982776 LTR13 1007 + 0 1007 21392 381 2 3 62 1 0 49 17 21 140 0 10 149 0 1 93 0 5 93 chain 7034 chr17 83257441 + 1129145 1129252 L1PA8 5853 + 5656 5760 77487 22 2 1 11 1 0 50 2 1 19 chain 4467 chr17 83257441 + 1151060 1151114 MIR 256 + 66 120 88507 54 chain 80378 chr17 83257441 + 1215245 1216191 SVA_B 1603 + 0 1603 21555 19 0 28 149 1 0 228 0 630 186 3 1 6 0 2 47 1 0 36 0 1 270 chain 20045 chr17 83257441 + 1599066 1599355 AluSc 308 + 0 296 56318 64 0 8 54 1 0 10 5 8 5 1 0 5 2 0 37 4 4 101 chain 6556 chr17 83257441 + 1824447 1824606 THE1C 375 + 0 162 79137 42 70 73 47 chain 3207 chr17 83257441 + 2121264 2121316 L1ME2z 1083 + 762 812 97822 7 0 4 14 6 0 25 chain 27360 chr17 83257441 + 2129981 2130288 AluYb8 318 + 4 310 45750 114 1 0 192 chain 26334 chr17 83257441 + 2142601 2142912 AluSp 311 + 0 306 47220 128 5 0 178 chain 3711 chr17 83257441 + 2188944 2188986 5S 121 + 0 42 93528 42 chain 55772 chr17 83257441 + 2255536 2256184 SVA_D 2077 + 1410 2063 27638 30 9 13 128 0 1 481 chain 23827 chr17 83257441 + 2426460 2426752 AluSc5 308 + 12 303 51058 245 2 1 45 chain 92647 chr17 83257441 + 2446630 2447699 SVA_D 2077 + 55 1335 19248 103 1 31 19 2 1 508 1 2 159 0 183 32 1 0 120 1 0 122 chain 86523 chr17 83257441 + 2447712 2448759 SVA_E 1901 + 812 1901 20321 10 17 0 27 0 74 91 0 1 37 0 1 4 19 45 153 43 0 646 chain 3398 chr17 83257441 + 2448070 2448113 SVA_E 1901 + 953 1002 48203 14 6 12 23 chain 3538 chr17 83257441 + 2449143 2449366 L1ME1 1623 + 133 453 94957 17 33 63 17 113 119 34 0 61 9 chain 8379 chr17 83257441 + 2494941 2495060 Tigger1 2417 + 1453 1585 73950 17 0 2 6 3 14 93 chain 158927 chr17 83257441 + 2506251 2508138 SVA_D 2077 + 12 2074 11814 43 12 0 505 0 40 87 0 40 181 0 185 295 0 1 4 9 8 22 78 0 651 chain 6325 chr17 83257441 + 2507410 2507476 SVA_D 2077 + 1473 1539 79911 66 chain 37932 chr17 83257441 + 2547548 2548131 LTR2 463 + 0 463 36115 129 7 10 243 129 6 75 chain 46631 chr17 83257441 + 2652883 2653429 L1PA5 6144 + 5599 6144 30805 41 2 0 486 1 0 4 1 3 11 chain 4683 chr17 83257441 + 3028315 3028423 MER20 218 + 44 161 87362 23 15 17 33 17 24 20 chain 10749 chr17 83257441 + 3097252 3097385 L1PB 1623 + 945 1078 68954 133 chain 256260 chr17 83257441 + 3098211 3101933 L1PA10 4194 + 175 3852 8080 14 2 0 9 3 0 9 2 0 9 52 44 12 87 70 5 3 0 9 1 0 5 1 0 9 1 0 12 13 0 13 1 0 11 1 0 69 19 10 30 43 43 345 19 20 115 0 1 166 3 5 255 24 24 60 0 3 212 10 0 66 0 4 122 32 23 36 0 4 93 16 22 88 0 4 342 0 4 38 3 2 17 0 1 131 3 4 673 0 3 205 0 2 45 6 5 7 0 1 10 0 1 135 chain 18630 chr17 83257441 + 3124362 3124631 L1PA8 5853 + 5592 5853 57965 16 2 0 74 17 13 49 2 1 15 2 1 92 chain 29661 chr17 83257441 + 3130342 3130685 L1PA3long 6157 + 5791 6157 42420 32 0 1 196 1 0 6 0 23 108 chain 52106 chr17 83257441 + 3158930 3159521 L1PA7 6471 + 5871 6461 28841 266 1 0 324 chain 554711 chr17 83257441 + 3176530 3182557 L1PA2 6032 + 0 6032 432 1630 1 0 399 0 6 3997 chain 5989 chr17 83257441 + 3203015 3203167 L1MA8 2339 + 2121 2263 81127 36 10 6 31 44 39 24 1 0 6 chain 145623 chr17 83257441 + 3217162 3218929 L1PA7 6471 + 4694 6467 12644 710 0 2 196 0 4 8 0 3 589 6 6 234 0 1 5 6 2 13 chain 22525 chr17 83257441 + 3226717 3226990 L1PA7 6471 + 6196 6469 53081 273 chain 51244 chr17 83257441 + 3246034 3246960 L1PB1 5432 + 4561 5420 29148 55 8 5 52 0 3 95 38 0 184 0 1 144 5 6 8 1 0 24 1 0 9 16 11 11 3 1 47 22 20 21 63 50 19 8 5 16 2 0 22 1 0 21 1 0 29 chain 29786 chr17 83257441 + 3248467 3248848 L1PA16 3655 + 1407 1792 42251 5 1 0 297 0 1 52 0 4 26 chain 16813 chr17 83257441 + 3253459 3254078 L1M1 2793 + 843 1134 60016 50 22 19 37 1 4 37 345 17 127 chain 55762 chr17 83257441 + 3254897 3255547 L1PA7 6471 + 5825 6470 27642 485 5 0 160 chain 32784 chr17 83257441 + 3267277 3267768 LTR12F 595 + 16 595 39682 20 0 1 35 0 143 20 36 0 5 18 0 84 2 0 68 2 0 125 0 2 76 chain 166792 chr17 83257441 + 3274295 3276105 L1PA2 6032 + 4222 6030 11288 1797 2 0 11 chain 56401 chr17 83257441 + 3301884 3302545 L1PA5 6144 + 4297 4950 27454 32 24 0 542 0 16 63 chain 74393 chr17 83257441 + 3326404 3333695 MER11A 1151 + 0 1151 22985 126 6196 0 101 0 4 63 0 11 21 0 2 34 0 1 27 0 1 158 11 10 98 2 0 25 6 9 12 1 2 40 0 4 65 0 1 47 3 0 9 0 35 179 1 0 66 chain 328953 chr17 83257441 + 3348385 3352043 L1HS 6032 + 1219 4878 6232 375 1 0 2400 0 2 882 chain 54390 chr17 83257441 + 3431774 3432371 L1PA3long 6157 + 5560 6157 28088 597 chain 114031 chr17 83257441 + 3456122 3457380 L1PA3long 6157 + 3068 4326 16547 1258 chain 156466 chr17 83257441 + 3464004 3465796 SVA_D 2077 + 58 2076 11971 170 0 1 667 16 158 6 0 1 25 2 0 144 0 78 38 0 1 8 1 0 9 0 1 14 0 12 10 5 1 10 0 1 353 1 0 304 3 0 6 chain 67716 chr17 83257441 + 3508165 3508899 L1PA3long 6157 + 5412 6146 24517 734 chain 32646 chr17 83257441 + 3568905 3569277 L1PA5 6144 + 5773 6144 39807 34 1 0 337 chain 52779 chr17 83257441 + 3633706 3634280 SVA_D 2077 + 1501 2074 28646 557 1 0 16 chain 56383 chr17 83257441 + 3702048 3702785 LTR12 884 + 0 872 27459 25 1 0 30 0 41 211 1 2 31 1 2 36 2 0 181 0 103 99 9 1 110 chain 132781 chr17 83257441 + 3853606 3855089 SVA_D 2077 + 0 2071 13755 13 5 0 12 5 0 203 0 1 532 0 40 77 0 535 510 0 20 56 0 2 70 chain 6810 chr17 83257441 + 3855102 3855247 L1MC2 1988 + 1578 1727 78277 82 48 52 15 chain 2814 chr17 83257441 + 3859340 3859381 MER21B 843 + 777 815 101590 31 3 0 7 chain 3097 chr17 83257441 + 3922730 3922765 MER45A 178 + 134 169 98818 35 chain 3900 chr17 83257441 + 3970423 3970468 MER45B 1037 + 991 1036 92125 45 chain 2902 chr17 83257441 + 4047331 4047362 L1MC4 1079 + 232 263 100825 31 chain 5596 chr17 83257441 + 4097740 4097807 LTR37A 408 + 268 335 82825 67 chain 7341 chr17 83257441 + 4192767 4192863 HY3 101 + 0 100 76544 31 1 5 64 chain 28401 chr17 83257441 + 4202416 4202719 AluYg6 310 + 0 303 44270 303 chain 24601 chr17 83257441 + 4208772 4209072 AluSp 311 + 0 295 49866 59 4 0 48 1 0 188 chain 3930 chr17 83257441 + 4248025 4248108 MIR 256 + 36 118 91904 15 15 16 33 3 1 17 chain 3762 chr17 83257441 + 4311289 4311330 L1MB5 1630 + 1095 1136 93124 41 chain 23709 chr17 83257441 + 4312454 4312720 AluY 311 + 40 307 51266 86 0 1 180 chain 25204 chr17 83257441 + 4371301 4371601 AluSq10 312 + 2 300 48942 292 2 0 6 chain 12370 chr17 83257441 + 4687909 4688047 L1PB1 5432 + 3356 3494 66196 138 chain 13376 chr17 83257441 + 4764448 4764614 THE1C 375 + 209 375 64502 118 0 1 22 1 0 25 chain 29453 chr17 83257441 + 4794647 4794962 AluYb8 318 + 0 313 42668 132 2 0 181 chain 4538 chr17 83257441 + 4801642 4801735 MER45A 178 + 18 109 88114 17 20 19 9 1 0 46 chain 64677 chr17 83257441 + 5143044 5143756 SVA_D 2077 + 1049 2064 25270 54 0 303 658 chain 3956 chr17 83257441 + 5191150 5191212 LTR6A 649 + 579 641 91710 6 0 1 4 0 1 8 1 0 26 1 0 16 chain 17463 chr17 83257441 + 5193600 5193821 L1PA6 6164 + 5931 6153 59283 58 13 14 150 chain 12249 chr17 83257441 + 5246112 5246281 LTR39 781 + 0 172 66371 19 1 3 13 11 12 125 chain 12601 chr17 83257441 + 5251775 5252018 Tigger2 2703 + 2475 2703 65793 83 0 2 65 62 48 11 4 1 18 chain 23728 chr17 83257441 + 5309367 5309680 AluSp 311 + 0 308 51230 48 9 5 224 2 1 30 chain 9662 chr17 83257441 + 5325357 5325660 L1MA4 2864 + 2524 2793 71137 81 25 29 22 2 0 7 1 3 9 79 49 14 10 4 17 11 9 25 chain 12882 chr17 83257441 + 5350941 5351143 MER30 238 + 0 234 65286 15 10 31 62 6 0 6 5 20 46 0 1 18 0 1 34 chain 9179 chr17 83257441 + 5431872 5432001 MER85 139 + 0 139 72164 96 4 14 29 chain 21698 chr17 83257441 + 5461333 5461621 AluY 311 + 2 297 54227 27 6 0 103 0 1 54 5 6 77 0 11 16 chain 8563 chr17 83257441 + 5466792 5466929 PABL_A-int 1935 + 145 283 73534 88 25 26 24 chain 36178 chr17 83257441 + 5467418 5467927 LTR19A 502 + 0 502 37290 176 6 10 33 17 2 59 5 7 24 0 3 5 3 1 140 0 1 41 chain 508117 chr17 83257441 + 5572838 5578894 L1PA5 6144 + 0 5767 2841 386 0 1 589 5 14 839 316 0 680 1 0 115 1 2 64 0 1 99 2 0 710 1 17 167 1 0 128 1 0 532 0 4 1419 chain 8704 chr17 83257441 + 5686318 5686514 MLT1A 405 + 49 276 73203 69 33 31 34 33 66 27 chain 26312 chr17 83257441 + 5725966 5727158 HSMAR1 1287 + 8 1206 19317 75 0 1 33 2 8 26 9 0 378 0 7 28 2 3 176 0 2 368 20 18 75 chain 165707 chr17 83257441 + 5727175 5730028 L1PB1 5432 + 3119 5418 11352 41 528 3 48 2 0 131 16 8 38 0 1 86 2 0 7 0 2 63 12 11 18 0 1 140 4 10 235 1 0 195 0 14 458 12 6 61 2 0 108 7 8 291 1 2 9 3 0 20 1 0 13 1 0 11 5 1 9 2 0 52 2 1 16 1 0 44 1 0 15 2 0 6 15 6 15 2 0 9 1 0 14 2 0 24 1 0 22 2 1 11 1 0 14 chain 34565 chr17 83257441 + 5727217 5727737 MLT2A2 560 + 0 560 38309 65 5 6 112 2 1 124 7 39 53 6 17 67 5 1 39 10 11 25 chain 1523 chr17 83257441 + 5730072 5730141 HSMAR1 1287 + 1217 1286 19317 69 chain 25630 chr17 83257441 + 5734842 5735186 L1PA8 5853 + 5516 5853 48268 48 1 0 44 2 0 43 1 0 28 1 0 11 1 0 50 2 1 19 1 0 33 0 1 59 chain 2814 chr17 83257441 + 5762887 5762945 MER81 114 + 0 59 101582 13 16 17 29 chain 47277 chr17 83257441 + 5768705 5769272 L1PA8 5853 + 5295 5853 30548 267 1 0 46 2 0 74 1 0 17 3 0 41 2 1 19 1 0 93 chain 122516 chr17 83257441 + 5771061 5772733 LTR12C 1709 + 0 1709 15111 271 6 10 10 9 5 42 0 43 27 1 2 54 20 4 182 0 119 68 1 0 275 1 0 5 3 1 106 10 4 9 1 2 21 0 2 137 102 0 228 1 0 82 chain 7319 chr17 83257441 + 5829303 5829404 LTR44 473 + 0 98 76602 57 4 1 40 chain 7847 chr17 83257441 + 5834897 5834988 LTR44 473 + 0 91 75262 91 chain 129330 chr17 83257441 + 5850799 5852215 L1PA3long 6157 + 3519 4932 14109 460 2 0 948 1 0 5 chain 4910 chr17 83257441 + 5857604 5857660 MER58B 340 + 272 328 86113 56 chain 5313 chr17 83257441 + 5939771 5939858 L1MB3 1562 + 1007 1093 84129 20 12 11 55 chain 25253 chr17 83257441 + 5960396 5960781 L1PA8 5853 + 5480 5853 48866 40 1 2 42 1 0 45 2 0 37 7 0 16 1 2 18 2 1 5 1 0 52 2 1 17 5 4 91 chain 45408 chr17 83257441 + 5969413 5969924 L1PA7 6471 + 5959 6470 31359 511 chain 3231 chr17 83257441 + 5980111 5980148 MLT1C 463 + 63 100 97659 37 chain 8921 chr17 83257441 + 5989752 5989864 L1PA5 6144 + 6030 6144 72734 100 1 3 11 chain 6298 chr17 83257441 + 5992856 5992974 L1PB1 5432 + 5309 5420 80000 13 12 10 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 11613 chr17 83257441 + 6005792 6005955 L1PA8 5853 + 5694 5853 67547 16 2 0 30 2 1 19 4 3 90 chain 72557 chr17 83257441 + 6153764 6154675 L1PA8 5853 + 4921 5853 23418 84 1 4 431 8 8 116 1 0 45 2 0 73 1 0 54 2 24 93 chain 131534 chr17 83257441 + 6225631 6227091 SVA_D 2077 + 0 2076 13867 25 5 0 17 0 6 221 0 1 199 0 76 363 0 537 486 0 1 144 chain 19126 chr17 83257441 + 6261866 6262103 L1PA5 6144 + 5916 6143 57423 74 7 0 140 3 0 13 chain 3203 chr17 83257441 + 6345506 6345544 MamRep488 187 + 55 93 97870 38 chain 3511 chr17 83257441 + 6354244 6354281 MLT1C 463 + 52 89 95167 37 chain 18883 chr17 83257441 + 6354888 6355134 L1PA8 5853 + 5611 5853 57658 71 1 0 7 1 0 51 2 1 19 2 1 92 chain 43016 chr17 83257441 + 6372993 6373451 L1PA2 6032 + 5574 6032 32764 458 chain 37983 chr17 83257441 + 6418973 6419834 L1PA8 5853 + 5320 5853 36086 135 0 5 61 0 3 40 2 1 43 3 1 29 324 0 37 5 4 9 1 0 57 1 0 15 2 1 33 5 0 59 chain 2731 chr17 83257441 + 6438166 6438209 MER6B 211 - 0 44 102116 22 4 5 17 chain 4978 chr17 83257441 + 6614711 6614801 MER44D 709 + 21 110 85766 27 16 15 47 chain 34426 chr17 83257441 + 6717738 6718182 LTR2 463 + 0 463 38412 61 0 3 112 12 27 159 12 13 88 chain 100971 chr17 83257441 + 6724677 6725866 L1PA6 6164 + 4972 6162 18188 76 1 0 235 1 2 27 0 4 78 0 1 65 5 4 362 1 0 330 2 0 6 chain 13257 chr17 83257441 + 6729987 6730164 L1M1 2793 - 1595 1771 64697 18 1 0 158 chain 3725 chr17 83257441 + 6730175 6730215 MER4E1 777 + 663 703 93443 40 chain 95248 chr17 83257441 + 6730556 6731956 L1M1 2793 + 1197 2625 18877 48 24 23 86 0 12 88 2 1 19 2 0 190 0 1 118 10 7 207 1 0 11 0 4 39 7 8 46 1 0 97 5 9 20 2 3 43 9 21 136 1 0 144 14 0 7 8 25 15 chain 17389 chr17 83257441 + 6737452 6737662 L1PB 1623 + 1235 1445 59369 210 chain 19398 chr17 83257441 + 6741072 6741318 L1PA8 5853 + 5610 5853 57133 80 1 0 50 2 1 19 1 0 93 chain 95021 chr17 83257441 + 6741943 6743282 L1MA3 4352 + 2424 3747 18905 232 1 2 60 11 12 10 10 6 27 9 10 513 4 0 145 1 0 167 17 19 22 17 5 93 chain 34227 chr17 83257441 + 6743981 6744836 L1PREC2 3366 + 2456 3215 38544 124 0 4 62 0 1 103 1 0 4 1 0 44 13 12 39 1 0 5 60 52 15 3 0 4 0 1 25 37 20 35 14 12 33 213 145 19 chain 25125 chr17 83257441 + 6811960 6812286 THE1D 372 + 0 332 49080 166 0 4 8 11 13 141 chain 38244 chr17 83257441 + 6821577 6822134 THE1D-int 1627 + 23 727 35878 15 1 0 32 1 0 132 1 2 138 4 106 28 21 67 5 1 0 141 0 2 5 9 8 23 chain 28217 chr17 83257441 + 6866702 6867005 AluYb8 318 + 19 318 44542 107 4 0 192 chain 51214 chr17 83257441 + 6916726 6917612 L1PB1 5432 + 4562 5420 29160 59 0 1 47 3 0 7 0 5 10 6 9 8 0 1 22 10 13 60 1 0 108 4 5 186 23 11 24 21 21 9 2 0 49 9 8 11 1 0 41 10 9 10 3 0 6 63 48 20 1 0 21 1 0 13 1 0 16 chain 127410 chr17 83257441 + 6943825 6945224 L1PA3long 6157 + 4756 6152 14367 446 3 0 950 chain 57691 chr17 83257441 + 6950808 6951474 L1PA7 6471 + 5800 6466 27056 70 0 1 98 1 0 497 chain 6151 chr17 83257441 + 6952573 6952641 MER41B 635 + 481 549 80534 68 chain 74853 chr17 83257441 + 6960183 6960999 L1PA3long 6157 + 5332 6150 22883 451 0 2 365 chain 30233 chr17 83257441 + 6989115 6989522 Tigger1 2417 + 652 1074 41822 76 0 1 71 0 11 13 0 1 158 12 14 77 chain 14486 chr17 83257441 + 7089461 7089633 LTR5B 1012 + 837 1012 62909 166 0 3 6 chain 33509 chr17 83257441 + 7123609 7124135 MLT2A2 560 + 0 560 39085 125 4 5 33 23 22 52 13 29 42 0 6 70 18 29 116 1 2 29 chain 20792 chr17 83257441 + 7125334 7125584 AluY 311 + 50 295 55369 75 7 2 168 chain 90726 chr17 83257441 + 7126270 7127272 LTR13 1007 + 8 1007 19549 526 3 0 473 chain 27011 chr17 83257441 + 7145594 7146005 MER4A 717 + 15 703 46253 37 0 18 10 16 4 45 1 0 27 0 198 16 0 40 83 27 61 149 chain 4285 chr17 83257441 + 7152964 7153034 L1MC2 1988 + 1603 1669 89598 11 8 3 10 0 1 41 chain 72119 chr17 83257441 + 7168879 7169774 MER11D 897 + 0 897 23505 38 0 1 536 0 23 48 1 0 214 30 9 28 chain 5514 chr17 83257441 + 7258082 7258151 MER41A 554 + 398 467 83184 69 chain 2996 chr17 83257441 + 7375947 7375998 L1ME1 1623 + 1233 1283 99871 21 5 4 25 chain 23721 chr17 83257441 + 7495003 7495290 AluSc 308 + 0 293 51245 72 0 6 215 chain 54973 chr17 83257441 + 7532327 7533291 PABL_A 660 + 0 660 27881 84 0 9 330 313 0 237 chain 112855 chr17 83257441 + 7640714 7642277 LTR12C 1709 + 0 1709 16691 211 40 56 11 0 1 59 9 53 213 5 6 40 0 119 68 1 0 237 0 2 36 1 0 4 4 2 90 26 2 14 11 4 71 5 6 322 2 0 19 1 0 63 chain 5487 chr17 83257441 + 7647290 7647354 MER45B 1037 + 516 580 83286 64 chain 4381 chr17 83257441 + 7704643 7704697 MIRc 230 + 69 123 88988 54 chain 8613 chr17 83257441 + 7806106 7806230 Tigger5 388 + 138 260 73424 97 1 0 4 2 1 20 chain 27964 chr17 83257441 + 8061906 8062290 LTR7 482 + 0 477 44926 101 13 63 47 11 53 41 0 1 171 chain 7441 chr17 83257441 + 8077905 8078074 MER2 342 + 6 185 76268 21 58 64 26 1 0 5 0 3 53 0 2 5 chain 44275 chr17 83257441 + 8082291 8082848 LTR14 556 + 0 556 31968 134 11 10 48 1 2 271 1 0 91 chain 24869 chr17 83257441 + 8093577 8093869 AluSp 311 + 0 288 49492 141 5 1 146 chain 6881 chr17 83257441 + 8119154 8119227 tRNA-Lys-AAA 73 + 0 73 78031 73 chain 3897 chr17 83257441 + 8119751 8119794 tRNA-Gln-CAG 43 + 0 43 92160 43 chain 3547 chr17 83257441 + 8120924 8120961 tRNA-Arg-AGA 37 + 0 37 94878 37 chain 5143 chr17 83257441 + 8125745 8125804 tRNA-Gly-GGY 63 + 0 58 84947 54 1 0 4 chain 6930 chr17 83257441 + 8186357 8186429 tRNA-Trp-TGG 72 + 0 72 77852 72 chain 7894 chr17 83257441 + 8186865 8186947 tRNA-Ser-AGY 82 + 0 82 75128 82 chain 4311 chr17 83257441 + 8187159 8187204 tRNA-Thr-ACY 58 + 0 45 89442 45 chain 3729 chr17 83257441 + 8187592 8187631 tRNA-Ile-ATT 40 + 0 39 93418 39 chain 3507 chr17 83257441 + 8221547 8221585 tRNA-Gly-GGA 38 + 0 38 95191 38 chain 11241 chr17 83257441 + 8306372 8306508 MER4A1 472 + 0 138 68180 47 1 2 32 0 1 56 chain 43123 chr17 83257441 + 8307730 8308607 MER4-int 2692 + 116 693 32700 114 0 1 73 10 11 245 1 0 5 0 1 59 309 7 61 chain 9266 chr17 83257441 + 8367845 8367948 SVA_E 1901 + 1797 1900 71988 103 chain 130427 chr17 83257441 + 8373175 8374641 SVA_B 1603 + 23 1603 13989 19 6 5 490 0 2 284 0 40 58 4 0 26 0 77 579 chain 128649 chr17 83257441 + 8549695 8551143 SVA_D 2077 + 26 2065 14198 11 0 5 163 0 11 622 0 575 652 chain 30130 chr17 83257441 + 8647037 8647453 MLT2A1 477 + 0 468 41914 48 0 2 89 0 1 21 9 13 208 13 59 17 1 0 10 chain 5190 chr17 83257441 + 8667128 8667189 MER53 195 + 0 61 84725 61 chain 41647 chr17 83257441 + 8768471 8768979 LTR10D 510 + 0 510 33596 76 9 8 187 1 3 70 0 1 165 chain 4053 chr17 83257441 + 8794130 8794283 MIR 256 + 58 221 91060 46 90 100 17 chain 39113 chr17 83257441 + 8826299 8826793 L1PA8 5853 + 5366 5853 35277 155 1 0 31 0 1 9 1 0 48 2 0 72 1 0 6 1 0 52 2 1 22 1 0 90 chain 2804 chr17 83257441 + 8853539 8853643 L1ME1 1623 + 145 248 101628 15 51 52 22 2 0 14 chain 3188 chr17 83257441 + 8900199 8900238 LTR37B 484 + 229 268 98009 39 chain 12992 chr17 83257441 + 8949625 8949900 L1PB1 5432 + 5167 5430 65124 53 18 16 45 1 0 15 5 0 6 15 6 18 19 29 15 1 0 21 1 0 13 1 0 18 2 0 8 chain 12695 chr17 83257441 + 8971034 8971200 MSTA 426 + 27 196 65625 105 1 0 19 0 4 41 chain 4161 chr17 83257441 + 8978931 8979000 L1MB8 1703 + 1482 1551 90380 21 5 6 4 1 0 38 chain 27006 chr17 83257441 + 8988575 8988947 THE1B 368 + 0 368 46262 82 12 13 74 1 0 22 2 4 5 4 0 32 1 0 10 1 0 126 chain 24482 chr17 83257441 + 8998812 8999095 AluSp 311 + 11 294 50060 283 chain 26579 chr17 83257441 + 9103315 9103680 THE1C 375 + 0 375 46860 182 35 46 122 1 0 25 chain 37964 chr17 83257441 + 9151742 9152261 LTR12F 595 + 1 595 36098 102 6 1 33 5 87 163 0 1 4 13 10 193 chain 3281 chr17 83257441 + 9196930 9197003 MER63A 208 + 51 125 97176 18 24 25 31 chain 3634 chr17 83257441 + 9335025 9335064 LTR10A 586 + 198 237 94157 39 chain 52842 chr17 83257441 + 9376112 9376878 LTR12 884 + 0 884 28626 143 5 4 22 41 17 61 0 25 23 8 24 21 1 2 36 2 0 202 0 103 201 chain 62886 chr17 83257441 + 9511347 9512465 L1MA5A 2387 + 19 1110 25657 13 0 5 10 3 1 9 2 1 15 75 55 11 25 20 21 6 4 15 5 7 87 1 8 32 0 3 170 6 4 73 22 22 46 18 16 234 6 5 23 5 6 78 24 14 83 chain 27031 chr17 83257441 + 9526919 9527203 AluYb8 318 + 22 306 46225 284 chain 5959 chr17 83257441 + 9531481 9531585 MER44A 345 + 28 148 81236 22 20 36 62 chain 73642 chr17 83257441 + 9563827 9564925 L1PA13 3608 + 2456 3434 23185 145 6 7 266 142 24 152 1 0 21 0 3 94 0 1 104 2 0 63 1 0 55 1 0 5 2 0 38 chain 6126 chr17 83257441 + 9602780 9603848 L1PA7 6471 + 6316 6468 80630 36 912 0 106 4 0 10 chain 566919 chr17 83257441 + 9615985 9622015 L1HS 6032 + 0 6030 43 6030 chain 26202 chr17 83257441 + 9684486 9684786 AluSp 311 + 5 305 47415 300 chain 16407 chr17 83257441 + 9731819 9732069 L1PA6 6164 + 5903 6161 60508 89 30 30 37 1 9 93 chain 41355 chr17 83257441 + 9732679 9733154 L1PA3long 6157 + 5676 6157 33759 326 7 0 10 0 7 118 0 6 14 chain 18925 chr17 83257441 + 9857962 9858207 MER2 342 + 93 336 57622 23 2 0 220 chain 39640 chr17 83257441 + 9965127 9965678 L1PA8 5853 + 5297 5853 34934 47 0 2 50 0 2 68 0 4 93 2 1 18 0 4 22 2 0 71 8 7 6 1 0 48 2 1 19 2 1 92 chain 129150 chr17 83257441 + 9993446 9994852 L1PA3long 6157 + 3911 5318 14127 1274 0 2 120 1 0 11 chain 27696 chr17 83257441 + 10009038 10009336 AluYa5 310 + 0 299 45324 132 1 0 147 0 2 18 chain 130961 chr17 83257441 + 10056772 10058247 SVA_C 1631 + 1 1614 13933 19 0 15 173 4 0 589 0 128 93 1 0 596 chain 3757 chr17 83257441 + 10070894 10070971 MADE1 96 - 0 96 93155 24 15 34 38 chain 4530 chr17 83257441 + 10183208 10183259 MER5A1 166 + 64 115 88165 51 chain 11397 chr17 83257441 + 10230391 10230603 THE1B 368 + 154 368 67919 15 5 4 28 45 48 119 chain 61287 chr17 83257441 + 10256776 10257639 L1PA8 5853 + 5013 5805 26035 362 41 0 17 47 6 164 1 0 46 2 0 70 26 24 34 0 17 7 1 0 45 chain 24505 chr17 83257441 + 10291623 10291998 THE1B 368 + 0 368 50010 13 2 0 34 0 1 113 36 32 11 3 0 6 0 3 81 1 0 68 1 0 6 chain 54882 chr17 83257441 + 10303597 10304261 L1PA7 6471 + 5780 6454 27913 5 0 3 200 0 3 211 0 4 248 chain 4475 chr17 83257441 + 10358413 10358466 MER5A 189 + 1 54 88465 53 chain 2790 chr17 83257441 + 10398221 10398261 MIR 256 + 110 147 101703 31 3 0 6 chain 7679 chr17 83257441 + 10472483 10472756 L1MA8 2339 + 2012 2261 75684 51 99 83 11 2 3 28 13 7 34 12 10 18 1 0 4 chain 6231 chr17 83257441 + 10536224 10536306 L1PB1 5432 + 5344 5423 80232 26 1 0 22 1 0 12 1 0 19 chain 84460 chr17 83257441 + 10540784 10541833 MER11B 1079 + 0 1057 20722 537 0 1 4 6 5 26 0 1 37 2 3 40 0 1 111 6 8 105 0 1 149 0 2 26 chain 11581 chr17 83257441 + 10702023 10702189 Tigger4a 237 + 60 236 67605 89 0 9 20 5 6 40 1 0 6 0 1 5 chain 4490 chr17 83257441 + 10754347 10754399 MIRb 242 + 68 120 88388 52 chain 15727 chr17 83257441 + 10809085 10809443 THE1C 375 + 0 360 61376 15 2 0 21 86 78 15 6 10 19 0 11 9 3 4 46 4 6 12 9 3 111 chain 2715 chr17 83257441 + 10856012 10856044 MER3 215 + 66 99 102206 23 0 1 9 chain 27268 chr17 83257441 + 10864347 10864703 THE1A 353 + 0 353 45869 108 1 0 94 1 0 17 1 0 134 chain 21418 chr17 83257441 + 10867364 10867689 THE1B 368 + 20 368 54617 24 16 31 48 0 1 52 1 0 130 19 27 35 chain 76482 chr17 83257441 + 10904534 10905375 L1PA3long 6157 + 4223 5097 22443 430 0 33 411 chain 53250 chr17 83257441 + 10917271 10918340 MER4E 760 + 0 752 28485 22 19 21 75 322 0 88 0 5 67 4 0 7 3 7 16 0 1 79 0 1 144 6 4 16 5 4 144 1 0 51 chain 11205 chr17 83257441 + 11022472 11022627 L1PB2 3958 + 3682 3834 68239 71 2 0 18 9 8 55 chain 58292 chr17 83257441 + 11034552 11035189 L1PA4 6152 + 5501 6143 26869 497 0 4 36 0 1 104 chain 52123 chr17 83257441 + 11044134 11044725 LTR10C 591 + 0 591 28836 591 chain 4042 chr17 83257441 + 11046615 11046694 L1MB5 1630 + 1435 1516 91140 31 18 20 30 chain 18992 chr17 83257441 + 11052589 11052826 MER47A 366 + 36 273 57560 237 chain 11342 chr17 83257441 + 11053761 11053949 MER53 195 + 0 195 68015 104 2 4 29 1 4 13 14 16 25 chain 99615 chr17 83257441 + 11067697 11068793 L1PA4 6152 + 4519 5622 18347 139 0 1 518 0 2 125 0 4 314 chain 29150 chr17 83257441 + 11110791 11111179 L1PA8 5853 + 5467 5852 43121 99 0 2 110 13 11 53 1 0 18 1 0 77 1 0 15 chain 11445 chr17 83257441 + 11128153 11128319 L1MB3 1562 + 1237 1402 67841 110 12 11 44 chain 6412 chr17 83257441 + 11157557 11157634 7SLRNA 320 + 103 180 79631 77 chain 393644 chr17 83257441 + 11163537 11168630 L1PA8 5853 + 50 5853 5253 21 2 0 11 1 0 13 51 16 51 0 1 4 6 5 130 18 6 281 0 1 5 8 7 63 0 1 161 14 17 167 2 1 127 1 0 449 5 1 401 0 1 34 8 9 447 0 4 73 70 844 420 0 1 35 0 1 11 0 1 278 0 6 60 0 1 148 5 1 644 2 0 384 20 4 139 0 1 4 1 0 21 1 0 46 2 0 74 1 0 6 1 0 7 1 2 43 2 1 10 13 12 90 chain 45641 chr17 83257441 + 11198749 11199315 MER41A 554 + 0 554 31240 236 7 0 126 11 8 51 2 0 133 chain 7286 chr17 83257441 + 11292365 11292455 L1PA8 5853 + 5763 5853 76714 90 chain 15356 chr17 83257441 + 11321762 11321983 MER30 238 + 0 237 61843 94 5 28 6 4 0 71 3 0 38 chain 37508 chr17 83257441 + 11350811 11351307 L1PA8 5853 + 5363 5853 36395 176 0 1 24 1 0 41 5 3 70 2 1 14 1 0 47 2 1 24 2 1 87 chain 38127 chr17 83257441 + 11359837 11360621 L1PA8 5853 + 5215 5682 35968 266 2 1 40 0 1 41 1 0 41 5 3 38 314 0 36 chain 11733 chr17 83257441 + 11360622 11360796 L1PA8 5853 + 5682 5853 67342 5 1 0 45 10 9 19 2 1 92 chain 9176 chr17 83257441 + 11396619 11396730 L1PA8 5853 + 5570 5679 72173 40 2 0 69 chain 13511 chr17 83257441 + 11396731 11396907 L1PA8 5853 + 5679 5853 64299 14 1 0 47 2 1 112 chain 28096 chr17 83257441 + 11479265 11479626 L1PA8 5853 + 5499 5853 44726 65 2 1 43 2 0 71 1 0 12 1 0 49 2 1 19 1 0 93 chain 3643 chr17 83257441 + 11489832 11489922 MER20 218 + 127 193 94073 24 34 10 32 chain 28040 chr17 83257441 + 11511085 11511450 L1PA8 5853 + 5494 5852 44799 70 1 0 45 2 0 69 2 1 9 2 1 6 1 0 49 1 0 16 1 0 7 0 1 84 chain 42224 chr17 83257441 + 11574824 11575367 MER41A 554 + 11 554 33234 26 5 6 468 1 0 43 chain 17129 chr17 83257441 + 11630469 11630713 L1PA8 5853 + 5613 5853 59666 69 1 0 6 1 0 52 2 1 19 15 14 79 chain 12061 chr17 83257441 + 11655664 11655857 L1PB1 5432 + 5114 5296 66738 20 1 0 12 1 0 6 11 7 9 2 0 52 2 1 15 1 0 45 1 0 15 chain 42549 chr17 83257441 + 11659301 11659922 LTR14B 630 + 9 630 33034 247 12 5 10 0 7 73 0 21 19 0 9 14 50 20 196 chain 6573 chr17 83257441 + 11734146 11734223 MER5A1 166 + 32 109 79063 77 chain 23969 chr17 83257441 + 11766690 11766985 AluSg7 307 + 8 297 50839 134 7 1 154 chain 35688 chr17 83257441 + 11893390 11893877 L1PA8 5853 + 5378 5853 37609 53 9 0 133 1 0 46 2 0 52 13 17 9 1 0 8 1 0 44 2 1 19 2 1 92 chain 4462 chr17 83257441 + 11930584 11930632 MER5A 189 + 21 69 88543 48 chain 29819 chr17 83257441 + 11971755 11972189 LTR7Y 441 + 0 441 42219 103 9 0 57 68 84 197 chain 257083 chr17 83257441 + 11972189 11975432 HERVH-int 3825 + 0 3118 8057 501 0 3 28 5 0 38 1 0 10 1 0 24 92 0 14 1 0 13 3 0 7 21 0 11 29 7 35 43 21 11 6 4 52 1 0 21 20 0 325 0 13 337 0 5 121 0 6 74 8 35 299 0 10 428 0 1 616 9 11 13 1 0 24 chain 29745 chr17 83257441 + 11976513 11976947 LTR7Y 441 + 0 441 42313 103 9 0 57 68 84 197 chain 3113 chr17 83257441 + 12070701 12070737 MER58A 224 + 47 83 98669 36 chain 14386 chr17 83257441 + 12147602 12147972 L1PB1 5432 + 5083 5422 63056 15 10 11 5 3 0 24 1 0 8 1 0 10 7 3 9 2 0 9 9 14 29 2 1 10 14 17 33 1 0 15 31 12 18 3 1 5 1 0 14 2 0 24 1 0 22 1 0 11 2 1 18 chain 26599 chr17 83257441 + 12149166 12149448 AluYa5 310 + 23 305 46837 282 chain 24094 chr17 83257441 + 12194320 12194796 L1PB1 5432 + 5001 5427 50654 104 1 0 11 3 0 22 1 0 5 21 16 8 2 0 69 1 0 41 7 6 13 3 0 6 16 6 19 46 28 15 1 0 21 1 0 13 1 0 18 2 0 5 chain 5984 chr17 83257441 + 12199922 12200159 L1ME1 1623 + 1234 1484 81148 45 136 154 13 5 0 38 chain 106501 chr17 83257441 + 12220720 12222220 LTR12C 1709 + 0 1709 17493 50 3 0 5 25 29 129 4 1 83 0 1 40 0 43 78 8 6 146 4 5 34 0 119 68 1 0 234 0 47 99 42 11 125 1 0 154 0 4 70 23 54 74 chain 13277 chr17 83257441 + 12274379 12274577 Tigger2a 444 + 0 212 64669 104 1 10 24 5 8 43 4 6 17 chain 30773 chr17 83257441 + 12300710 12301144 MLT2A1 477 + 0 477 41330 18 0 1 84 0 1 65 4 1 12 1 2 20 0 1 43 1 2 87 0 6 28 0 4 6 0 4 24 5 31 25 0 1 11 chain 11643 chr17 83257441 + 12381013 12381245 MER4D1 891 + 540 776 67493 116 62 55 22 6 17 26 chain 39408 chr17 83257441 + 12384121 12384668 LTR12_ 688 + 0 673 35074 25 9 8 45 0 41 44 26 9 182 0 103 216 chain 15099 chr17 83257441 + 12427098 12427302 MER2 342 + 131 329 62156 6 6 0 192 chain 26621 chr17 83257441 + 12444486 12444845 L1PA8 5853 + 5498 5853 46799 5 0 1 60 1 0 44 2 0 19 0 2 53 1 0 5 2 1 52 2 1 19 1 0 93 chain 6147 chr17 83257441 + 12491561 12491648 MLT1B 390 + 0 83 80543 25 7 3 55 chain 36910 chr17 83257441 + 12493596 12494094 MLT2A2 560 + 0 547 36803 307 9 41 49 5 16 53 0 6 29 1 0 4 0 1 41 chain 72951 chr17 83257441 + 12644942 12645781 L1PA6 6164 + 5266 6162 23323 719 1 58 119 chain 43934 chr17 83257441 + 12655309 12655779 L1HS 6032 + 5558 6028 32174 470 chain 2861 chr17 83257441 + 12662117 12662359 MLT1E1A 663 + 281 616 101154 21 184 279 24 2 0 11 chain 13460 chr17 83257441 + 12784424 12784595 Tigger3a 397 + 143 313 64374 27 1 0 143 chain 17367 chr17 83257441 + 12871740 12871989 MSTA 426 + 158 404 59399 49 1 0 29 2 0 10 18 18 140 chain 58916 chr17 83257441 + 12895569 12896257 L1PA5 6144 + 5449 6132 26686 57 0 1 84 0 1 215 1 0 191 6 0 134 chain 3416 chr17 83257441 + 13084505 13084542 LTR16C 481 + 200 237 95940 37 chain 23536 chr17 83257441 + 13101913 13102272 MER66B 489 + 108 470 51528 192 8 17 23 8 18 17 17 0 70 3 4 21 chain 25545 chr17 83257441 + 13139700 13140047 THE1C 375 + 0 350 48415 176 18 22 79 2 1 72 chain 10248 chr17 83257441 + 13164644 13164789 L1MA2 4263 + 3977 4114 69901 8 1 0 4 0 1 68 7 0 48 1 0 8 chain 25005 chr17 83257441 + 13368535 13369797 L1PB1 5432 + 4875 5423 49268 228 1 2 10 768 53 48 6 5 15 1 0 22 63 50 6 0 1 11 3 1 5 1 0 14 15 34 12 1 0 12 1 0 19 chain 93617 chr17 83257441 + 13450655 13452106 L1PB1 5432 + 3998 5423 19093 348 0 1 157 9 7 58 17 35 24 9 6 178 3 1 228 6 5 57 1 2 9 5 0 24 1 0 8 1 0 10 14 6 5 0 2 33 4 0 18 2 1 11 5 4 45 37 27 18 1 0 5 12 10 5 2 0 23 2 1 22 1 0 11 2 1 11 1 0 8 chain 18386 chr17 83257441 + 13454543 13454758 L1PA8A 6298 + 6032 6247 58257 215 chain 23164 chr17 83257441 + 13465247 13465511 AluSp 311 + 21 285 52126 264 chain 3581 chr17 83257441 + 13500330 13500373 MADE1 96 + 53 96 94573 43 chain 23610 chr17 83257441 + 13512081 13512327 AluYb9 318 + 64 310 51413 246 chain 61022 chr17 83257441 + 13548607 13549411 LTR12 884 + 0 869 26098 94 0 2 3 0 66 61 1 0 49 2 1 101 2 0 47 3 4 21 3 0 7 4 7 406 chain 94972 chr17 83257441 + 13664081 13665660 HSMAR1 1287 + 2 1287 18915 95 22 28 88 2 16 130 312 0 215 1 0 542 24 23 148 chain 12089 chr17 83257441 + 13676836 13677000 L1PBa 3878 + 3572 3735 66687 145 2 1 17 chain 121071 chr17 83257441 + 13689379 13690794 L1PA7 6471 + 5037 6464 15336 538 0 2 44 2 0 92 0 8 114 0 1 300 0 1 65 1 3 259 chain 17553 chr17 83257441 + 13696348 13696703 L1PB 1623 + 1234 1575 59173 46 1 0 5 0 1 11 0 3 18 6 23 87 0 1 17 1 0 7 2 1 30 1 0 4 3 0 14 4 0 13 1 0 11 52 28 21 chain 17397 chr17 83257441 + 13745286 13745682 MSTA 426 + 5 426 59359 31 6 12 14 0 1 26 58 66 49 5 14 6 6 0 10 30 29 37 14 22 104 chain 3734 chr17 83257441 + 13750962 13751004 MER58A 224 + 49 91 93372 42 chain 7131 chr17 83257441 + 13768095 13768203 L1PB4 2604 + 2465 2572 77163 85 11 10 12 chain 12654 chr17 83257441 + 13809044 13809210 Tigger2 2703 + 2476 2642 65715 153 0 1 5 1 0 7 chain 482576 chr17 83257441 + 13855495 13861330 L1PA5 6144 + 0 5870 3580 131 47 63 15 8 7 204 3 2 109 4 0 280 0 17 124 25 0 213 13 4 320 8 10 814 6 5 658 0 1 242 4 41 248 0 1 118 7 0 331 5 7 36 2 1 42 0 10 286 1 0 1019 1 0 511 chain 114840 chr17 83257441 + 13909358 13910892 THE1A-int 1579 + 0 1569 16406 41 68 3 12 0 75 175 0 1 343 0 1 4 0 2 6 8 29 877 chain 36375 chr17 83257441 + 13913613 13914504 MER4B 649 + 8 619 37155 23 5 0 58 1 0 68 0 42 145 306 12 41 80 56 104 3 5 57 chain 39585 chr17 83257441 + 13916989 13917445 LTR2 463 + 0 456 34966 456 chain 30781 chr17 83257441 + 13955169 13955552 MLT2A1 477 + 0 380 41319 169 4 1 210 chain 8935 chr17 83257441 + 13972974 13973153 MER51A 677 + 142 471 72704 28 16 15 13 10 91 12 1 73 92 2 0 5 chain 27738 chr17 83257441 + 13976540 13976841 AluYd8 298 + 0 298 45267 111 3 0 187 chain 11445 chr17 83257441 + 14000969 14001112 MSTA 426 + 270 414 67840 64 0 1 79 chain 4796 chr17 83257441 + 14013885 14013941 MER1B 344 + 288 344 86719 56 chain 5663 chr17 83257441 + 14041669 14041757 MLT2B2 565 + 486 565 82499 6 0 1 21 10 0 51 chain 27570 chr17 83257441 + 14115341 14115838 L1PB4 2604 + 2047 2552 45485 72 0 2 31 10 11 42 2 0 92 16 17 62 7 9 59 65 69 39 chain 85331 chr17 83257441 + 14146084 14147297 L1MA2 4263 + 2880 4056 20560 28 6 7 89 0 2 9 36 4 283 1 9 252 2 0 4 2 0 17 8 4 67 8 7 87 0 1 42 17 14 15 13 10 127 1 0 8 1 0 90 chain 3980 chr17 83257441 + 14238221 14238267 MER83 447 + 358 405 91576 41 0 1 5 chain 16165 chr17 83257441 + 14362697 14362905 MER30 238 + 36 232 60796 64 12 0 132 chain 5829 chr17 83257441 + 14450018 14450172 MLT2C2 476 + 251 404 81791 25 1 6 22 13 16 31 43 34 19 chain 89272 chr17 83257441 + 14476353 14477499 L1PA8 5853 + 4694 5853 19808 140 0 1 16 0 13 145 6 8 79 0 3 191 0 1 273 1 0 45 5 3 67 1 0 8 6 5 48 2 1 19 1 0 93 chain 462618 chr17 83257441 + 14598193 14603927 L1PA8 5853 + 108 5849 4062 197 0 4 48 5 15 262 7 0 7 1 7 371 3 0 257 1 0 139 0 1 379 1 0 231 7 1 221 1 0 523 0 4 95 2 1 225 14 0 22 0 2 34 0 1 65 0 1 11 8 10 353 0 2 139 0 2 632 7 8 471 0 6 151 0 1 333 2 1 126 10 15 28 11 12 42 1 0 44 2 0 74 1 0 6 16 1 8 0 14 32 1 0 15 8 7 84 chain 31613 chr17 83257441 + 14604818 14605243 MER57A1 433 + 0 433 40653 84 0 4 194 0 1 17 19 22 111 chain 123428 chr17 83257441 + 14642096 14643718 L1PB1 5432 + 3457 5078 14956 41 8 6 20 0 3 5 25 22 108 2 3 60 12 8 8 0 1 190 2 5 25 0 1 661 9 6 75 0 2 371 chain 31082 chr17 83257441 + 14678497 14678919 L1PA8 5853 + 3911 4335 41064 146 8 20 67 0 1 166 18 7 17 chain 30895 chr17 83257441 + 14720983 14721339 L1PA5 6144 + 5775 6132 41219 221 0 1 135 chain 70224 chr17 83257441 + 14721355 14722451 L1PREC2 3366 + 1970 3041 23945 216 10 21 181 0 13 98 23 13 165 3 0 40 5 9 26 3 0 54 1 0 38 0 1 5 1 0 4 3 0 13 29 21 17 10 5 12 2 0 13 0 1 15 38 21 34 9 7 28 chain 6615 chr17 83257441 + 14758620 14758697 AluYg6 310 + 0 75 78919 6 2 0 69 chain 5813 chr17 83257441 + 14759222 14759298 MADE1 96 + 0 95 81859 29 0 18 8 0 1 39 chain 5092 chr17 83257441 + 14793550 14793608 MER57B1 401 + 7 65 85193 58 chain 4325 chr17 83257441 + 14833998 14834049 MER5A1 166 + 29 80 89322 51 chain 2839 chr17 83257441 + 14834353 14834431 LTR12D 1347 + 587 624 101330 22 41 0 15 chain 6863 chr17 83257441 + 14840502 14840586 MLT1A0 366 + 280 363 78092 54 1 0 29 chain 102829 chr17 83257441 + 14858318 14859551 L1PA7 6471 + 4073 5322 17972 25 0 1 212 1 3 105 0 2 60 0 4 240 0 1 137 0 3 220 1 4 232 chain 2658 chr17 83257441 + 14919800 14919839 MIR 256 + 149 186 102672 16 2 0 21 chain 3351 chr17 83257441 + 14962850 14962890 MER90a 614 + 574 614 96593 40 chain 45785 chr17 83257441 + 14970710 14971294 L1PB1 5432 + 1780 2363 31174 431 13 12 140 chain 9229 chr17 83257441 + 14984909 14985028 Tigger2a 444 + 4 126 72055 100 1 4 18 chain 26909 chr17 83257441 + 15052446 15052748 L1PA5 6144 + 5836 6137 46398 4 1 0 297 chain 22163 chr17 83257441 + 15057669 15058001 L1PA8 5853 + 5525 5853 53622 39 1 0 46 2 0 13 0 3 56 8 6 52 2 1 16 4 3 93 chain 5903 chr17 83257441 + 15110256 15110347 MER53 195 - 28 120 81473 59 0 2 9 8 7 15 chain 193395 chr17 83257441 + 15147845 15150549 MER57-int 2662 + 44 2662 9957 26 47 29 9 1 0 132 0 4 69 2 0 112 1 5 389 9 7 7 0 1 211 4 0 51 2 0 308 1 0 35 3 0 5 2 0 30 0 2 138 0 1 183 0 2 41 17 0 15 0 2 47 8 4 65 8 12 98 0 1 225 7 24 85 18 15 27 0 2 41 73 21 18 1 0 15 4 1 24 1 0 9 5 0 33 3 0 31 2 0 6 chain 282614 chr17 83257441 + 15199247 15205567 L1PA10 4194 + 175 4150 7352 11 2 0 14 3 0 7 2 0 8 12 8 9 2 0 9 15 13 15 5 3 14 1 0 8 133 102 88 1 0 4 3 2 121 3 4 141 9 11 47 4 5 64 2 0 74 1 0 142 0 1 259 0 1 400 1 0 64 2 0 30 7 0 5 0 2 276 21 22 199 0 1 50 0 16 63 2326 13 109 14 14 33 1 0 14 0 4 64 1 0 97 6 7 478 7 8 190 0 5 593 3 0 33 chain 29400 chr17 83257441 + 15299301 15299614 AluYb8 318 + 0 312 42737 123 1 0 189 chain 8195 chr17 83257441 + 15311345 15311453 U6 107 + 1 107 74420 101 2 0 5 chain 493496 chr17 83257441 + 15355214 15360799 L1PA5 6144 + 3 6127 3327 86 0 525 197 0 17 192 0 1 180 1 2 1095 0 1 865 2 1 430 1 0 234 0 1 434 4 0 1621 1 0 242 chain 6457 chr17 83257441 + 15407716 15407797 L1MB3 1562 + 1195 1276 79488 81 chain 9650 chr17 83257441 + 15421016 15421152 L1PA8 5853 + 5722 5853 71160 18 2 1 55 4 0 57 chain 24762 chr17 83257441 + 15439653 15439937 L1PA5 6144 + 5698 5981 49643 203 2 1 79 chain 13636 chr17 83257441 + 15439941 15440093 L1PA5 6144 + 5986 6138 64110 152 chain 112887 chr17 83257441 + 15505515 15506847 LTR12C 1709 + 0 1695 16686 36 0 1 257 1 2 13 0 8 497 0 200 57 0 47 106 0 4 168 0 102 197 chain 14417 chr17 83257441 + 15551576 15551786 MER30 238 + 8 235 63010 99 8 20 24 1 7 37 1 0 40 chain 92650 chr17 83257441 + 15637032 15638268 SVA_F 1814 + 797 1814 19247 83 4 0 68 177 15 250 52 0 591 1 0 10 chain 14403 chr17 83257441 + 15637202 15637362 SVA_F 1814 + 978 1138 44335 160 chain 4714 chr17 83257441 + 15637614 15637666 SVA_F 1814 + 988 1037 65794 13 2 0 4 1 0 32 chain 34892 chr17 83257441 + 15654435 15654913 LTR15 485 + 0 478 38100 39 8 9 101 0 2 86 1 0 39 0 4 105 0 1 10 2 1 43 7 0 12 6 7 19 chain 42356 chr17 83257441 + 15762311 15762940 THE1D-int 1627 + 982 1619 33160 150 10 11 11 66 67 26 0 7 101 5 4 260 chain 25672 chr17 83257441 + 15799679 15799980 AluYk4 311 + 0 302 48213 139 5 6 157 chain 34232 chr17 83257441 + 15803310 15803710 L1PA7 6471 + 6068 6470 38540 238 3 7 146 2 0 11 chain 6638 chr17 83257441 + 15814264 15814389 L1PB1 5432 + 5308 5422 78848 17 29 21 24 1 0 22 1 0 12 1 0 18 chain 40265 chr17 83257441 + 15838256 15838764 MER9a3 513 + 0 513 34464 13 0 1 25 1 0 4 0 1 66 0 1 108 0 3 7 3 0 29 1 0 148 0 1 33 5 7 46 0 1 19 chain 31890 chr17 83257441 + 15859882 15860303 LTR2 463 + 0 447 40422 96 0 4 36 1 0 26 7 27 16 3 5 152 12 13 72 chain 3152 chr17 83257441 + 15866761 15866795 SVA_E 1901 + 0 34 98354 34 chain 139490 chr17 83257441 + 15866795 15868381 SVA_D 2077 + 45 2072 13142 510 0 40 92 0 40 176 0 85 35 0 1 4 1 0 6 2 4 22 0 127 121 0 147 617 chain 4427 chr17 83257441 + 15884252 15884307 MER3 215 + 0 55 88751 55 chain 8350 chr17 83257441 + 15910624 15910738 MER30 238 + 128 236 74024 7 9 0 61 0 3 37 chain 6705 chr17 83257441 + 15986396 15986478 L1MA8 2339 + 2010 2091 78625 69 1 0 12 chain 28185 chr17 83257441 + 16023421 16023812 MER75 514 + 111 509 44587 25 0 2 282 0 4 39 19 17 15 0 3 11 chain 13623 chr17 83257441 + 16077659 16077849 HSMAR1 1287 + 1089 1287 64134 118 0 4 46 11 15 15 chain 151197 chr17 83257441 + 16094554 16096320 SVA_D 2077 + 10 2077 12277 5 0 1 9 29 0 10 0 42 684 0 40 107 1 0 8 1 38 32 0 1 47 2 4 182 5 193 147 1 0 345 0 1 15 0 20 136 chain 7450 chr17 83257441 + 16097390 16097529 MER21C 908 + 282 403 76244 12 14 0 14 1 0 21 16 13 61 chain 4365 chr17 83257441 + 16144821 16144873 SVA_A 1864 + 19 71 89087 52 chain 112158 chr17 83257441 + 16144879 16146306 SVA_B 1603 + 8 1597 16791 5 2 0 23 56 41 61 0 10 371 0 40 263 0 51 85 11 13 15 0 77 81 4 3 450 chain 25379 chr17 83257441 + 16240826 16241139 AluSp 311 + 0 307 48654 52 7 1 254 chain 23550 chr17 83257441 + 16246237 16246521 AluSc 308 + 0 290 51501 47 4 10 233 chain 3836 chr17 83257441 + 16271832 16271882 MER53 195 + 112 161 92588 26 1 0 23 chain 31400 chr17 83257441 + 16368975 16369768 MLT2A1 477 + 0 469 40813 142 0 1 25 1 5 37 5 0 7 307 5 161 1 0 3 15 0 10 38 33 30 1 0 10 chain 5491 chr17 83257441 + 16375829 16375892 L1MB2 1706 + 1411 1474 83274 63 chain 4759 chr17 83257441 + 16396631 16396697 BC200 147 + 78 143 86912 36 0 1 4 2 0 24 chain 12839 chr17 83257441 + 16397828 16398101 MER4B 649 + 362 624 65378 35 2 1 19 63 54 5 1 0 38 10 11 39 1 0 60 chain 75350 chr17 83257441 + 16400194 16401128 LTR5A 1029 + 93 1029 22756 57 1 0 411 1 0 165 0 1 4 1 0 40 6 5 11 0 3 29 1 2 163 11 12 33 chain 3406 chr17 83257441 + 16410829 16410883 U2 167 + 15 60 96015 38 9 0 7 chain 13577 chr17 83257441 + 16437702 16437856 L1PA5 6144 + 5990 6144 64202 154 chain 24209 chr17 83257441 + 16437873 16438151 AluSp 311 + 19 294 50482 270 3 0 5 chain 3968 chr17 83257441 + 16458890 16458935 MLT1F1 559 + 488 533 91654 45 chain 31070 chr17 83257441 + 16501695 16502157 MER31A 484 + 0 457 41072 129 0 16 51 10 9 166 5 6 29 23 2 49 chain 6774 chr17 83257441 + 16539548 16539745 LTR9B 643 + 460 643 78401 12 13 11 17 8 1 11 3 0 5 9 9 41 38 36 40 chain 145697 chr17 83257441 + 16543182 16545577 HUERS-P3b-int 2065 + 13 2044 12635 81 3 0 18 313 0 205 0 1 260 3 0 18 0 6 82 14 10 79 2 1 54 1 0 76 5 8 111 0 4 14 2 1 61 0 1 21 1 0 9 1 8 78 0 1 195 0 2 53 1 0 44 29 2 64 23 1 19 2 0 13 1 0 24 1 0 90 3 1 56 25 16 14 8 7 62 4 0 56 2 1 29 0 2 59 0 7 6 chain 23010 chr17 83257441 + 16602744 16603119 L1PB3 3668 + 3145 3503 52343 43 18 19 82 2 1 95 7 6 81 29 13 18 chain 8616 chr17 83257441 + 16614903 16615040 L1MB3 1562 + 1291 1425 73417 60 1 0 24 10 9 37 1 0 4 chain 4801 chr17 83257441 + 16636943 16636998 L1P1 4361 + 3816 3871 86691 55 chain 148421 chr17 83257441 + 16637046 16638697 L1PA4 6152 + 4314 5976 12460 176 0 5 809 0 4 414 0 2 252 chain 28961 chr17 83257441 + 16656793 16657111 AluYb8 318 + 1 314 43392 125 5 0 188 chain 10979 chr17 83257441 + 16725522 16725777 L1PB1 5432 + 5202 5430 68579 4 0 1 5 1 0 7 1 0 17 1 0 45 1 0 15 3 0 6 16 6 17 10 7 14 2 0 24 1 0 22 1 0 11 2 1 10 1 0 8 1 0 4 1 0 4 chain 166987 chr17 83257441 + 16778763 16781249 L1PB1 5432 + 2974 5416 11270 87 5 4 140 1 0 313 6 13 6 7 0 90 18 11 86 16 8 453 4 21 131 0 6 85 1 0 7 0 1 16 1 0 172 1 5 381 36 37 56 19 11 24 46 21 9 2 0 52 2 1 10 3 6 44 1 0 15 3 0 2 9 0 28 9 6 14 2 0 27 1 0 19 5 4 8 1 0 12 chain 36768 chr17 83257441 + 16828031 16828474 L1PA6 6164 + 5723 6162 36910 292 9 5 142 chain 5854 chr17 83257441 + 16889940 16890016 L1PB1 5432 + 5349 5422 81676 21 1 0 22 1 0 12 1 0 18 chain 145035 chr17 83257441 + 16901499 16903297 L1PA8A 6298 + 4270 6061 12688 470 24 14 65 1 0 666 1 0 4 8 13 559 chain 30129 chr17 83257441 + 16921583 16921959 MER41A 554 + 0 379 41915 149 0 1 15 1 0 103 0 2 72 0 1 36 chain 14359 chr17 83257441 + 16922044 16922235 MER4E1 777 + 577 769 63098 88 1 2 102 chain 67168 chr17 83257441 + 16947202 16948121 L1PA16 3655 + 2593 3526 24657 52 0 1 29 1 0 115 0 3 108 1 0 21 1 0 60 0 2 160 0 1 59 1 0 81 7 5 65 0 4 56 13 17 61 0 5 28 chain 24986 chr17 83257441 + 16984293 16984599 AluSp 311 + 4 311 49307 106 1 2 199 chain 3667 chr17 83257441 + 17148277 17148321 Charlie1b 519 + 12 56 93849 44 chain 23472 chr17 83257441 + 17157566 17157847 AluSp 311 + 14 301 51630 33 1 7 247 chain 9886 chr17 83257441 + 17178443 17178633 7SLRNA 320 + 40 226 70648 40 30 25 80 21 22 19 chain 3134 chr17 83257441 + 17301551 17301585 MER52D 1964 + 1117 1151 98514 34 chain 10831 chr17 83257441 + 17371519 17371647 MER41A 554 + 105 233 68807 128 chain 10238 chr17 83257441 + 17371998 17372125 MER4A 717 + 0 128 69925 25 1 0 4 0 1 59 0 1 38 chain 42363 chr17 83257441 + 17391556 17392438 LTR12_ 688 + 0 681 33154 118 20 21 108 205 107 8 1 0 90 103 0 229 chain 3093 chr17 83257441 + 17424739 17424830 MER52A 1651 + 896 978 98847 20 9 0 19 30 30 13 chain 65323 chr17 83257441 + 17430738 17431461 L1PA5 6144 + 5417 6140 25101 723 chain 4326 chr17 83257441 + 17438623 17438670 L1MB3 1562 + 1072 1119 89312 47 chain 6231 chr17 83257441 + 17438780 17438861 MER4B 649 + 3 85 80233 28 1 0 15 0 2 37 chain 6472 chr17 83257441 + 17460455 17460532 HY3 101 + 22 99 79433 77 chain 132009 chr17 83257441 + 17486170 17487716 LTR12C 1709 + 0 1709 13825 562 17 18 126 0 159 246 1 0 113 0 4 481 chain 8311 chr17 83257441 + 17578630 17578739 U6 107 + 0 107 74131 79 3 1 27 chain 3451 chr17 83257441 + 17643273 17643316 MLT1B 390 + 21 64 95645 43 chain 4264 chr17 83257441 + 17890343 17890397 MADE2 80 + 11 65 89741 54 chain 8224 chr17 83257441 + 17924164 17924395 L1MB8 1703 + 1512 1661 74342 76 59 16 24 47 8 25 chain 101535 chr17 83257441 + 18010390 18013824 L1MA5A 2387 + 814 2375 18123 72 1 0 18 5 9 127 1542 0 231 311 0 33 3 5 80 5 10 37 0 4 116 1 0 18 1 10 51 1 0 149 9 11 48 0 1 96 0 2 30 1 2 59 3 2 35 2 0 9 0 8 21 1 0 47 2 0 54 51 21 23 2 0 43 34 21 15 1 0 8 1 0 22 2 0 13 chain 12131 chr17 83257441 + 18086798 18087625 MER30 238 + 31 236 66602 67 653 0 11 1 29 58 0 3 37 chain 139832 chr17 83257441 + 18297421 18299068 SVA_D 2077 + 4 2077 13112 54 0 2 44 0 27 593 0 3 31 9 6 126 0 396 26 11 12 64 0 1 4 15 14 670 chain 131736 chr17 83257441 + 18337543 18339066 SVA_C 1631 + 0 1631 13853 24 0 1 27 0 4 666 0 40 164 13 64 31 21 24 239 0 13 317 4 0 17 chain 16804 chr17 83257441 + 18419725 18419957 LTR14A 344 + 0 201 60027 111 31 0 90 chain 72984 chr17 83257441 + 18436893 18437858 LTR5_Hs 974 + 14 974 23318 11 17 6 103 0 1 161 4 0 36 0 12 43 1 0 72 0 4 196 0 1 51 5 7 52 22 13 191 chain 4875 chr17 83257441 + 18529564 18529624 L1PREC2 3366 + 2675 2735 86292 60 chain 245351 chr17 83257441 + 18532301 18540392 L1PA11 4918 + 128 4578 8345 52 1 0 6 0 1 14 26 23 64 56 68 46 1 6 191 19 15 10 8 2 558 19 25 130 0 7 6 17 10 334 13 13 104 4 1 103 0 1 5 1 0 259 0 4 22 1 0 22 0 3 11 4471 831 16 0 1 204 0 1 247 0 3 658 2 1 125 6 0 62 2 1 17 1 4 60 2 0 42 41 32 5 1 0 13 2 0 11 chain 49577 chr17 83257441 + 18547165 18547825 PABL_A 660 + 0 660 29739 108 0 2 181 0 1 258 0 2 9 17 8 18 0 4 17 16 16 36 chain 11143 chr17 83257441 + 18659547 18659801 MLT1A0 366 + 62 318 68347 84 106 108 64 chain 7918 chr17 83257441 + 18706057 18706198 MER20 218 + 0 172 75077 56 31 61 48 0 1 6 chain 39483 chr17 83257441 + 18753041 18753571 LTR19B 566 + 18 566 35024 70 0 5 191 0 1 11 0 1 153 12 11 14 16 25 11 0 3 52 chain 3183 chr17 83257441 + 18774825 18774863 L1MA4 2864 + 2766 2804 98040 38 chain 8595 chr17 83257441 + 18789880 18790104 L1MB8 1703 + 1499 1662 73459 88 108 47 28 chain 11966 chr17 83257441 + 18801795 18801934 MER85 139 + 0 139 66889 139 chain 21803 chr17 83257441 + 18875870 18876154 AluSp 311 + 20 294 54094 28 2 1 238 9 0 7 chain 21983 chr17 83257441 + 18925829 18926107 AluY 311 + 0 292 53862 56 3 9 67 0 1 61 0 1 8 0 6 83 chain 3034 chr17 83257441 + 18936217 18936341 L1MB5 1630 + 870 987 99466 27 15 14 14 52 46 16 chain 4014 chr17 83257441 + 18953724 18953796 Tigger4a 237 + 47 105 91356 11 15 1 46 chain 26403 chr17 83257441 + 19083583 19083894 AluSq10 312 + 0 305 47115 147 6 0 158 chain 3179 chr17 83257441 + 19097578 19097622 LTR25 836 + 59 102 98110 9 2 1 33 chain 12120 chr17 83257441 + 19124187 19124389 MER4B 649 + 60 305 66630 28 2 3 39 27 69 106 chain 44269 chr17 83257441 + 19434769 19436029 PABL_B 668 + 0 668 31972 54 7 11 157 641 0 30 5 50 45 6 5 84 1 4 49 3 1 178 chain 145921 chr17 83257441 + 19440792 19442424 SVA_D 2077 + 7 2077 12620 905 0 86 39 0 1 11 0 352 658 1 0 18 chain 60274 chr17 83257441 + 19458895 19459666 MER4E1 777 + 0 769 26303 24 2 0 224 1 0 90 6 5 193 0 1 11 16 20 77 3 0 124 chain 6632 chr17 83257441 + 19463066 19463148 MSTB-int 1649 + 1568 1649 78868 65 1 0 16 chain 26218 chr17 83257441 + 19471408 19471720 AluSp 311 + 0 307 47394 125 1 0 5 4 0 177 chain 122135 chr17 83257441 + 19475322 19476694 SVA_D 2077 + 4 2056 15173 21 5 0 101 1 0 416 0 40 105 0 157 69 0 488 299 1 2 354 chain 37805 chr17 83257441 + 19482635 19483180 MER4D1 891 + 0 542 36200 108 4 7 52 1 2 44 0 2 15 6 0 220 0 1 6 2 0 6 1 0 28 20 19 32 chain 6121 chr17 83257441 + 19498161 19498514 MSTD 398 + 0 378 80650 55 175 202 24 55 56 19 8 5 17 chain 6677 chr17 83257441 + 19508180 19508252 tRNA-Trp-TGG 72 + 0 72 78715 72 chain 8444 chr17 83257441 + 19512719 19512842 MER4D1 891 + 190 320 73809 22 13 20 88 chain 5669 chr17 83257441 + 19565885 19566020 MER44D 709 + 68 215 82477 53 50 62 32 chain 27572 chr17 83257441 + 19640114 19640411 AluYb8 318 + 18 315 45484 105 1 0 106 0 1 85 chain 23482 chr17 83257441 + 19680948 19681238 AluY 311 + 17 295 51615 115 0 1 150 13 0 12 chain 79173 chr17 83257441 + 19684858 19685794 SVA_A 1864 + 15 1841 21812 584 0 334 99 0 556 253 chain 77964 chr17 83257441 + 19689721 19690774 L1MA3 4352 + 2525 3556 22106 59 2 0 9 6 10 529 1 0 261 47 22 48 0 2 91 chain 24319 chr17 83257441 + 19690836 19691135 AluSp 311 + 0 294 50305 21 1 0 104 3 0 52 1 0 117 chain 6002 chr17 83257441 + 19730192 19730295 MLT1A0 366 + 0 101 81069 28 12 11 38 2 1 23 chain 4788 chr17 83257441 + 19848068 19848124 U6 107 + 0 56 86755 56 chain 6193 chr17 83257441 + 19860861 19860932 tRNA-Gly-GGG 71 + 0 71 80384 71 chain 14251 chr17 83257441 + 19883359 19883526 AluYk4 311 + 134 302 63268 40 0 1 127 chain 134672 chr17 83257441 + 19950298 19951909 SVA_B 1603 + 0 1602 13575 7 3 0 15 0 26 21 14 1 772 0 36 16 47 0 27 4 0 12 1 0 25 8 4 529 0 1 110 chain 12499 chr17 83257441 + 19974328 19974508 MER30 238 + 34 237 65989 23 1 2 37 11 33 108 chain 4408 chr17 83257441 + 19997693 19997776 5S 121 + 6 89 88853 18 23 23 42 chain 79898 chr17 83257441 + 20016291 20017558 LTR12C 1709 + 0 1709 21643 29 1 6 6 0 4 119 1 0 122 12 8 44 6 49 73 7 8 5 0 1 31 0 1 159 0 1 49 0 444 49 75 20 60 77 76 255 22 21 29 7 11 29 chain 23127 chr17 83257441 + 20150384 20150651 AluSp 311 + 27 296 52176 236 0 2 31 chain 27402 chr17 83257441 + 20321917 20322205 AluYd8 298 + 0 288 45702 288 chain 169838 chr17 83257441 + 20407325 20409809 L1PB1 5432 + 2974 5416 11114 231 1 0 313 6 13 6 7 0 90 18 11 86 16 8 453 4 21 131 0 6 85 1 0 7 0 1 16 1 0 157 0 4 401 0 2 82 24 16 24 46 21 9 2 0 52 2 1 10 3 6 44 2 1 14 13 1 29 9 6 14 2 0 27 1 0 19 5 4 8 1 0 12 chain 36546 chr17 83257441 + 20499697 20500136 L1PA6 6164 + 5723 6162 37045 292 11 11 136 chain 4591 chr17 83257441 + 20537769 20537824 HY3 101 + 17 73 87836 25 0 1 30 chain 9007 chr17 83257441 + 20541785 20541908 MER30 238 + 116 238 72543 6 4 0 68 0 3 45 chain 88421 chr17 83257441 + 20557008 20558030 SVA_B 1603 + 75 1603 19961 229 0 216 30 0 3 120 0 281 202 0 3 60 0 1 224 0 2 157 chain 13037 chr17 83257441 + 20561398 20561653 L1PB1 5432 + 5195 5424 65050 25 2 1 16 1 0 44 1 0 15 1 0 4 21 8 19 8 5 12 2 0 26 1 0 22 1 0 12 1 0 16 1 0 4 chain 43556 chr17 83257441 + 20577364 20577981 THE1D-int 1627 + 982 1619 32410 150 10 11 32 27 46 26 0 7 101 5 4 55 6 0 205 chain 27321 chr17 83257441 + 20602338 20602639 AluYk4 311 + 0 301 45799 301 chain 33763 chr17 83257441 + 20605963 20606365 L1PA7 6471 + 6068 6470 38879 69 1 0 169 6 9 144 2 0 11 chain 6295 chr17 83257441 + 20629766 20629891 L1PB1 5432 + 5308 5422 80020 17 31 23 22 1 0 22 1 0 12 1 0 18 chain 40221 chr17 83257441 + 20656191 20656696 MER9a3 513 + 0 513 34509 13 0 1 96 0 1 108 0 3 7 3 0 29 1 0 61 0 5 82 0 1 86 5 6 14 chain 33750 chr17 83257441 + 20677522 20677945 LTR2 463 + 0 447 38887 96 0 4 36 2 1 25 7 27 179 0 1 78 chain 3152 chr17 83257441 + 20684380 20684414 SVA_E 1901 + 0 34 98353 34 chain 149572 chr17 83257441 + 20684414 20686101 SVA_D 2077 + 45 2074 12383 506 0 40 96 0 40 184 0 36 26 0 1 4 1 0 7 2 1 48 1 4 5 1 0 138 0 225 668 chain 12868 chr17 83257441 + 20809148 20809316 MER44A 345 + 155 319 65313 77 4 0 87 chain 17199 chr17 83257441 + 20820613 20820889 L1PA16 3655 + 3290 3571 59573 60 48 53 168 chain 4408 chr17 83257441 + 20823162 20823246 MLT1J 494 + 107 190 88856 49 23 22 12 chain 97378 chr17 83257441 + 20860017 20861102 L1PA3long 6157 + 5075 6157 18608 224 1 0 844 3 0 9 0 1 4 chain 128007 chr17 83257441 + 20881701 20883177 L1PA5 6144 + 4659 6140 14275 180 1 0 455 5 9 507 0 1 150 4 5 174 chain 6334 chr17 83257441 + 20910678 20910755 MER101 471 + 394 471 79884 77 chain 59842 chr17 83257441 + 20918918 20919580 L1PA5 6144 + 4012 4674 26417 662 chain 135847 chr17 83257441 + 20984043 20986218 SVA_F 1814 + 335 1814 13451 563 608 0 49 0 15 39 7 4 208 100 0 601 chain 3030 chr17 83257441 + 20984606 20984644 SVA_F 1814 + 1138 1176 68789 38 chain 3186 chr17 83257441 + 20984646 20984685 SVA_F 1814 + 1080 1119 61531 39 chain 32729 chr17 83257441 + 20984685 20985214 SVA_F 1814 + 878 1265 38427 69 0 15 4 155 0 150 0 1 60 2 0 10 1 0 78 chain 11560 chr17 83257441 + 20984758 20984913 SVA_F 1814 + 1015 1142 47119 49 0 22 27 50 0 29 chain 2108 chr17 83257441 + 20984861 20984884 SVA_F 1814 + 899 922 88380 23 chain 8870 chr17 83257441 + 20985517 20985617 SVA_F 1814 + 924 1037 58648 23 0 15 39 1 0 4 1 0 32 chain 8817 chr17 83257441 + 20989212 20989317 L1PB 1623 + 1336 1441 72956 105 chain 5272 chr17 83257441 + 21050169 21050239 L1PB1 5432 + 5355 5422 84328 15 1 0 22 1 0 12 1 0 18 chain 58687 chr17 83257441 + 21108530 21109278 MER4E1 777 + 0 769 26763 24 2 0 139 0 2 159 0 4 135 0 1 56 0 1 15 6 14 140 5 12 25 1 2 22 1 0 18 chain 4254 chr17 83257441 + 21113561 21113608 LTR24B 570 + 515 562 89802 47 chain 16314 chr17 83257441 + 21225388 21225608 L1PA6 6164 + 5934 6156 60611 65 19 21 136 chain 12828 chr17 83257441 + 21258785 21258952 MER41B 635 + 0 168 65399 127 1 2 39 chain 8127 chr17 83257441 + 21260935 21261048 MER41A 554 + 430 554 74576 92 1 12 20 chain 5918 chr17 83257441 + 21353745 21353866 L1MB5 1630 + 1435 1572 81406 36 6 0 6 23 46 26 1 0 23 chain 37735 chr17 83257441 + 21456523 21456971 L1PA6 6164 + 5704 6152 36251 129 0 1 173 1 0 145 chain 43086 chr17 83257441 + 21468431 21468938 MER9a1 513 + 0 507 32725 16 1 0 148 2 1 165 1 3 174 chain 11851 chr17 83257441 + 21499388 21499548 MER30 238 + 61 238 67111 37 0 2 11 4 0 6 2 21 100 chain 51397 chr17 83257441 + 21555008 21555936 L1PB1 5432 + 4626 5423 29078 88 1 0 83 0 1 4 1 0 11 3 0 290 2 3 8 95 0 24 1 0 6 1 0 12 7 3 9 2 0 52 18 16 45 1 0 15 1 0 4 2 0 11 9 0 15 9 6 14 2 0 24 7 6 15 1 0 7 0 2 6 4 2 10 3 0 5 chain 79790 chr17 83257441 + 21558547 21559559 MER11C 1089 + 6 1052 21667 155 0 3 95 0 3 57 1 18 254 7 8 86 6 5 63 1 4 18 1 9 268 chain 110205 chr17 83257441 + 21569978 21571381 L1PA8A 6298 + 4881 6290 17054 28 4 9 247 26 26 293 1 0 88 1 2 431 0 1 284 chain 161883 chr17 83257441 + 21588781 21590566 L1PA3long 6157 + 4369 6157 11620 1115 0 1 77 2 0 265 0 3 30 0 1 296 chain 53368 chr17 83257441 + 21590583 21591160 SVA_D 2077 + 1486 2063 28452 577 chain 22092 chr17 83257441 + 22181343 22181647 THE1B 368 + 13 326 53711 29 1 16 114 1 0 28 4 0 94 1 0 32 chain 116996 chr17 83257441 + 22181715 22183254 THE1B-int 1605 + 34 1593 16056 93 0 1 304 0 25 201 38 0 11 3 43 219 8 0 662 chain 12245 chr17 83257441 + 22227438 22227707 MER4B 649 + 362 620 66383 30 71 61 23 1 0 38 15 16 34 1 0 56 chain 74865 chr17 83257441 + 22229629 22230618 LTR5A 1029 + 0 1027 22876 76 15 21 38 14 0 12 1 0 209 1 2 170 0 56 186 18 6 43 1 2 163 11 12 31 chain 25513 chr17 83257441 + 22288108 22288405 AluYk4 311 + 9 303 48464 123 3 0 171 chain 7247 chr17 83257441 + 22335487 22335576 L1MB8 1703 + 1468 1557 76825 89 chain 54466 chr17 83257441 + 22340225 22341165 L1PA2 6032 + 5164 6032 28063 170 74 0 545 0 1 18 0 1 133 chain 8886 chr17 83257441 + 22416098 22416225 L1P3 4156 + 4012 4136 72807 93 2 0 9 2 1 21 chain 141115 chr17 83257441 + 22554308 22555881 L1PA3long 6157 + 4583 6157 13020 801 1 0 756 3 5 12 chain 24673 chr17 83257441 + 22615830 22616294 LTR7 482 + 0 482 49768 48 29 67 42 61 10 63 0 31 24 11 10 124 13 14 49 chain 15773 chr17 83257441 + 22617809 22618016 L1PA6 6164 + 5954 6160 61316 61 9 8 137 chain 173147 chr17 83257441 + 22635601 22637609 L1PA5 6144 + 4132 6144 10945 1165 0 4 586 1 0 82 22 23 152 chain 131266 chr17 83257441 + 22649599 22651054 L1PA2 6032 + 4566 6025 13895 1312 0 3 64 0 1 79 chain 120118 chr17 83257441 + 22720417 22721771 L1P1 4361 + 2896 4249 15521 1254 1 0 99 chain 148060 chr17 83257441 + 22740480 22742203 SVA_D 2077 + 0 2077 12477 11 1 7 597 1 0 221 40 0 72 0 82 46 0 2 54 0 1 9 1 305 37 0 1 624 1 0 8 chain 31577 chr17 83257441 + 25684902 25685247 L1HS 6032 + 5686 6032 40683 4 0 1 341 chain 61010 chr17 83257441 + 25919281 25919935 L1HS 6032 + 0 655 26104 559 1 2 94 chain 78277 chr17 83257441 + 26637548 26638491 SVA_C 1631 + 41 1113 22034 499 40 0 177 0 40 80 0 88 30 2 0 4 1 0 32 0 45 59 1 0 18 chain 21615 chr17 83257441 + 26638511 26638867 SVA_F 1814 + 847 1291 54331 8 1 0 32 75 5 53 1 160 17 2 0 51 0 3 98 1 0 17 chain 83711 chr17 83257441 + 26638884 26639858 SVA_D 2077 + 1049 2074 20869 43 0 1 157 49 0 96 0 99 629 chain 3446 chr17 83257441 + 26639084 26639133 SVA_D 2077 + 1074 1123 40128 49 chain 88436 chr17 83257441 + 26640717 26641682 L1PA2 6032 + 5062 6027 19956 965 chain 339993 chr17 83257441 + 26675746 26679560 L1PA2 6032 + 2203 6032 6067 188 0 2 269 0 2 1074 0 8 89 0 2 1346 18 18 494 0 1 336 chain 171158 chr17 83257441 + 26692286 26694240 L1PA3long 6157 + 4202 6155 11042 1204 6 6 733 1 0 10 chain 143263 chr17 83257441 + 26699198 26700813 L1PA2 6032 + 4417 6032 12837 1615 chain 499639 chr17 83257441 + 26735155 26741675 L1PA4 6152 + 6 5972 3139 10 1 0 38 570 6 57 2 1 462 1 0 1365 0 12 1654 14 15 2346 chain 321215 chr17 83257441 + 27010710 27014306 L1PA3long 6157 + 2559 6156 6380 138 1 0 569 0 2 246 0 1 1329 1 0 816 0 1 491 1 0 4 chain 368702 chr17 83257441 + 27028612 27032941 L1P1 4361 + 1 4341 5682 229 5 14 292 1 0 643 2 0 58 1 0 695 0 4 324 0 1 146 14 12 1364 1 0 101 0 2 106 1 3 155 1 0 105 0 3 47 1 0 23 2 1 12 chain 149071 chr17 83257441 + 27033158 27034843 SVA_F 1814 + 9 1814 12413 104 0 8 816 2 0 10 1 15 27 1 0 4 4 91 11 37 0 4 0 49 650 0 2 14 chain 2948 chr17 83257441 + 27034138 27034173 SVA_F 1814 + 1234 1269 75287 35 chain 8579 chr17 83257441 + 27092021 27092144 MER85 139 + 1 139 73497 27 8 23 88 chain 3659 chr17 83257441 + 27126940 27126985 MER6B 211 - 147 192 93921 45 chain 39095 chr17 83257441 + 27131187 27131638 L1PA4 6152 + 2997 3450 35290 33 0 1 135 1 2 282 chain 255778 chr17 83257441 + 27145788 27148646 L1PA3long 6157 + 3289 6157 8096 656 1 0 222 0 1 1120 0 4 12 0 4 64 0 2 783 chain 87877 chr17 83257441 + 27197413 27198430 LTR13 1007 + 0 1007 20073 191 0 1 237 13 1 234 0 1 342 chain 129867 chr17 83257441 + 27207662 27209219 L1PA7 6471 + 4875 6466 14056 379 0 31 336 1 0 77 0 2 321 4 3 112 0 1 186 0 1 4 1 0 128 0 2 8 chain 175041 chr17 83257441 + 27211423 27213326 SVA_E 1901 + 5 1901 10829 148 1 0 664 1 0 26 1 0 84 3 0 31 2 1 942 chain 30344 chr17 83257441 + 27223581 27223911 L1PA3long 6157 + 5812 6142 41716 330 chain 516332 chr17 83257441 + 27249213 27255349 L1PA6 6164 + 0 6161 2453 194 3 2 5 0 1 185 8 9 58 2 1 54 2 1 23 1 2 362 1 4 129 0 2 14 0 8 441 4 5 300 1 0 533 0 1 809 0 2 44 1 2 511 0 2 47 0 3 925 1 0 711 0 4 767 chain 5168 chr17 83257441 + 27269175 27269241 MER41B 635 + 481 549 84828 17 0 1 9 0 1 40 chain 28691 chr17 83257441 + 27270541 27270894 THE1A 353 + 0 353 43813 353 chain 7082 chr17 83257441 + 27278797 27278873 SVA_E 1901 + 1814 1890 77319 76 chain 23183 chr17 83257441 + 27372900 27373258 THE1B 368 + 0 368 52104 44 8 23 101 1 0 31 3 0 66 39 38 65 chain 113705 chr17 83257441 + 27373258 27374800 THE1B-int 1605 + 0 1589 16587 121 0 9 35 5 6 177 0 4 64 10 35 47 14 12 110 0 2 243 1 0 70 20 23 33 3 4 315 20 19 138 6 11 4 0 1 106 chain 22411 chr17 83257441 + 27374816 27375154 THE1B 368 + 0 354 53255 44 5 20 108 10 9 13 2 0 99 1 0 32 5 10 19 chain 15297 chr17 83257441 + 27404158 27404370 L1PA8 5853 + 5645 5853 61921 30 5 4 14 1 0 47 2 1 19 1 0 93 chain 29887 chr17 83257441 + 27554371 27554820 MER1A 529 + 42 529 42144 34 53 82 238 1 8 53 7 9 63 chain 325024 chr17 83257441 + 27696684 27701135 HERVK9-int 4720 + 71 4309 6309 23 0 1 16 33 31 17 33 32 856 0 1 206 1 0 424 0 5 285 11 13 4 1 0 685 1 2 24 1 0 53 1 0 4 0 1 722 0 1 9 1 0 404 206 0 196 11 0 223 chain 2943 chr17 83257441 + 27711978 27712048 LTR12F 595 + 144 236 100482 24 25 47 21 chain 424418 chr17 83257441 + 27712459 27717775 HERV9-int 5642 + 11 5492 4821 162 4 5 153 30 32 63 4 6 164 6 7 95 45 18 128 2 0 15 4 0 16 0 85 141 1 2 99 1 2 1140 3 26 614 0 1 159 0 1 269 0 2 19 0 2 5 2 0 686 0 80 105 0 2 6 2 0 295 0 1 613 1 0 227 5 3 32 chain 49863 chr17 83257441 + 27725893 27726558 LTR12 884 + 0 884 29615 183 0 4 34 1 108 11 2 3 34 9 13 168 0 103 223 chain 3338 chr17 83257441 + 27783289 27783329 MER45A 178 + 76 116 96711 40 chain 3240 chr17 83257441 + 27899156 27899205 MER5A1 166 + 36 76 97574 7 9 0 33 chain 43319 chr17 83257441 + 27901801 27902269 L1PA2 6032 + 4411 4879 32548 468 chain 45465 chr17 83257441 + 27908082 27909010 MER41B 635 + 0 635 31328 121 1 19 311 338 30 31 3 0 123 chain 33899 chr17 83257441 + 27937025 27937644 LTR9B 643 + 9 643 38786 58 58 73 64 1 0 21 0 1 195 32 30 55 3 7 29 63 61 40 chain 5176 chr17 83257441 + 28020614 28020801 L1MA7 2200 + 2015 2170 84789 24 4 0 6 12 5 33 75 55 21 1 0 11 chain 75982 chr17 83257441 + 28036364 28037211 L1PA4 6152 + 4250 5101 22582 388 0 3 319 0 1 140 chain 14769 chr17 83257441 + 28085761 28086040 Tigger3a 397 + 76 384 62571 22 6 9 30 1 0 10 3 13 7 9 0 10 5 37 108 28 22 40 chain 57849 chr17 83257441 + 28155258 28155930 L1PA6 6164 + 5483 6161 27011 253 1 0 21 0 1 351 0 4 38 0 2 8 chain 28497 chr17 83257441 + 28208166 28208467 AluYa8 305 + 0 301 44131 301 chain 268823 chr17 83257441 + 28211600 28215050 L1P2 5180 + 35 3469 7740 100 15 14 44 2 1 50 16 15 129 76 58 60 26 25 34 1 0 222 0 15 311 51 38 79 0 1 204 0 1 888 1 0 215 0 4 245 0 1 400 1 0 280 chain 8882 chr17 83257441 + 28215056 28215152 L1PA6 6164 + 6060 6156 72813 96 chain 163495 chr17 83257441 + 28223104 28225299 SVA_F 1814 + 10 1814 11511 877 402 0 60 0 15 37 1 0 12 1 0 154 23 22 617 1 0 10 chain 15527 chr17 83257441 + 28223983 28224269 SVA_F 1814 + 888 1111 39976 15 78 0 44 0 15 149 chain 7482 chr17 83257441 + 28223998 28224076 SVA_F 1814 + 1016 1094 47451 78 chain 3216 chr17 83257441 + 28224269 28224323 SVA_F 1814 + 1160 1214 62264 54 chain 2065 chr17 83257441 + 28224323 28224346 SVA_F 1814 + 925 948 83318 23 chain 7447 chr17 83257441 + 28260336 28260439 LTR46-int 301 + 90 193 76252 28 1 2 31 1 0 42 chain 31154 chr17 83257441 + 28260857 28261310 LTR46 455 + 0 455 41016 188 0 1 4 12 9 34 4 0 65 4 3 17 4 5 21 6 12 52 0 2 42 chain 80709 chr17 83257441 + 28261719 28262796 MER11B 1079 + 0 1073 21490 23 2 0 197 0 5 295 1 0 17 0 1 4 6 5 33 14 15 146 10 0 25 1 3 103 0 1 11 4 5 162 1 0 22 chain 46980 chr17 83257441 + 28272389 28273025 MER4E 760 + 0 652 30668 23 0 1 110 11 24 22 0 1 77 4 0 102 19 23 195 1 2 72 chain 3853 chr17 83257441 + 28293560 28293611 L1MB2 1706 + 1641 1694 92475 4 0 1 18 0 1 29 chain 5649 chr17 83257441 + 28307722 28307785 LTR12F 595 + 21 84 82565 63 chain 22324 chr17 83257441 + 28348428 28348723 AluSp 311 + 8 295 53372 64 10 0 190 5 7 26 chain 140127 chr17 83257441 + 28458168 28459761 SVA_D 2077 + 0 2059 13088 13 5 0 27 1 26 830 32 429 32 0 49 322 0 3 135 3 0 193 chain 2569 chr17 83257441 + 28459044 28459075 SVA_D 2077 + 816 847 81912 31 chain 5128 chr17 83257441 + 28482354 28482428 Charlie4a 502 + 357 432 85032 51 2 3 21 chain 12927 chr17 83257441 + 28530034 28530191 L1PA7 6471 + 6310 6467 65210 157 chain 22370 chr17 83257441 + 28596823 28597096 AluSp 311 + 0 291 53310 110 0 1 21 1 0 25 0 18 116 chain 6739 chr17 83257441 + 28834721 28834820 HY3 101 + 0 100 78515 38 6 7 55 chain 36363 chr17 83257441 + 28893601 28894064 LTR2B 499 + 9 499 37166 5 1 0 10 0 10 37 1 0 40 0 19 369 chain 3984 chr17 83257441 + 28966976 28967068 MIR 256 + 33 126 91558 20 31 32 41 chain 4090 chr17 83257441 + 29063021 29063069 MER5B 177 + 5 53 90848 48 chain 3653 chr17 83257441 + 29173685 29173732 MADE1 96 + 46 92 93983 9 1 0 37 chain 26958 chr17 83257441 + 29183715 29184316 L1MC1 2226 + 1637 2192 46323 77 10 5 57 1 2 64 30 27 17 7 0 31 1 0 62 4 1 15 2 0 49 39 33 6 5 0 17 66 52 31 1 0 9 chain 24286 chr17 83257441 + 29208698 29209037 L1PA8 5853 + 5521 5853 50352 43 1 0 44 2 0 70 2 1 10 2 1 50 2 1 19 18 17 76 chain 8900 chr17 83257441 + 29210321 29210450 MER63C 923 + 77 223 72784 58 8 25 63 chain 3244 chr17 83257441 + 29232498 29232534 MLT1D 503 + 436 472 97535 36 chain 3047 chr17 83257441 + 29543624 29543656 U2 167 + 0 32 99333 32 chain 13665 chr17 83257441 + 29586225 29586438 MER30 238 + 32 237 64066 12 0 1 62 32 23 107 chain 10511 chr17 83257441 + 29694001 29694199 MER30 238 + 0 238 69396 24 26 44 33 7 26 26 0 6 39 3 0 40 chain 40659 chr17 83257441 + 29725376 29725908 L1PA8 5853 + 5329 5847 34181 57 7 0 178 2 1 43 2 0 70 2 1 11 6 5 45 2 1 19 1 0 87 chain 68556 chr17 83257441 + 29876601 29877579 L1MA2 4263 + 3144 4106 24321 36 12 14 57 0 1 300 1 0 15 2 0 17 6 2 75 2 1 146 3 0 144 28 26 66 34 27 4 0 1 30 chain 31200 chr17 83257441 + 29886009 29886464 THE1B-int 1605 + 18 487 40976 78 57 0 17 0 3 122 0 3 112 0 1 41 1 65 27 chain 374722 chr17 83257441 + 29897115 29901289 L1PA4 6152 + 1970 6152 5574 416 0 4 775 1 0 534 0 1 240 0 1 641 2 0 722 0 4 730 0 1 113 chain 30493 chr17 83257441 + 29903922 29904336 L1P3 4156 + 3727 4137 41577 106 2 0 31 0 1 242 2 0 6 6 5 19 chain 51774 chr17 83257441 + 29906221 29907032 L1PA11 4918 + 3874 4646 28947 15 0 5 389 0 1 44 6 0 11 1 0 56 1 0 12 2 0 67 2 0 11 8 7 16 1 0 9 3 0 5 2 0 8 13 9 15 1 0 13 2 0 11 31 21 6 2 0 6 2 0 27 5 0 8 chain 33564 chr17 83257441 + 29936085 29936468 L1PA5 6144 + 5763 6142 39036 372 4 0 7 chain 74902 chr17 83257441 + 29945592 29947310 L1PB3 3668 + 2437 3566 22866 60 11 20 40 2 7 101 1 0 74 0 1 196 10 14 28 6 9 21 5 0 282 324 0 101 1 0 78 291 15 16 33 29 37 chain 19658 chr17 83257441 + 29953029 29953322 L1PREC2 3366 + 2211 2515 56848 108 11 13 15 12 16 130 1 6 16 chain 2990 chr17 83257441 + 30001111 30001159 MER74B 573 + 403 451 99953 15 4 3 14 0 1 15 chain 81356 chr17 83257441 + 30011790 30012781 LTR13 1007 + 0 1007 21362 141 9 13 227 2 3 272 0 10 149 6 7 185 chain 3634 chr17 83257441 + 30015478 30015522 L1PA6 6164 + 1401 1445 94145 44 chain 307898 chr17 83257441 + 30022793 30026172 L1PA3long 6157 + 2756 6150 6662 506 0 1 4 1 0 1148 1 0 678 0 16 1041 chain 16092 chr17 83257441 + 30037875 30038126 Tigger1 2417 + 369 621 60902 53 16 13 83 15 14 24 0 4 24 0 1 36 chain 13393 chr17 83257441 + 30068321 30068570 L1MA5 2750 + 1126 1365 64483 20 65 55 164 chain 3753 chr17 83257441 + 30137545 30137586 MLT1I 406 + 296 337 93217 41 chain 56727 chr17 83257441 + 30250049 30250869 L1PB2 3958 + 3035 3838 27348 42 0 1 30 7 6 90 1 5 54 0 4 40 2 0 67 21 0 56 0 2 19 2 0 102 5 4 60 1 0 48 4 8 8 1 0 73 2 0 21 7 6 57 chain 122404 chr17 83257441 + 30522804 30524227 SVA_D 2077 + 15 2073 15123 32 0 8 144 0 84 176 0 76 253 0 1 89 1 0 30 2 0 8 3 1 30 12 0 45 1 408 13 0 76 584 chain 28307 chr17 83257441 + 30549327 30549789 MER1A 529 + 63 525 44400 17 17 17 155 0 1 189 66 65 18 chain 5702 chr17 83257441 + 30692062 30692128 MLT1A0 366 + 224 290 82336 66 chain 6435 chr17 83257441 + 30861842 30861921 U6 107 + 0 78 79553 64 1 0 14 chain 24825 chr17 83257441 + 30881977 30882269 AluSp 311 + 0 295 49549 91 0 3 201 chain 5223 chr17 83257441 + 30895262 30895320 HY4 93 + 35 93 84580 58 chain 3243 chr17 83257441 + 30946195 30946235 MER5A1 166 + 125 165 97551 40 chain 9725 chr17 83257441 + 30953836 30953980 MER30 238 + 68 230 70991 31 11 0 13 1 27 57 0 3 31 chain 4792 chr17 83257441 + 30962763 30962818 LTR43 600 + 545 600 86737 55 chain 22349 chr17 83257441 + 31035661 31035916 SVA_B 1603 + 1349 1603 53344 51 2 0 82 0 1 120 chain 303592 chr17 83257441 + 31177168 31181135 L1PA7 6471 + 1050 4852 6755 183 0 6 20 0 43 32 7 8 4 1 0 24 0 4 487 1 2 28 1 2 538 0 6 203 3 5 46 3 0 365 0 1 47 0 2 158 21 22 217 239 0 77 0 1 281 14 21 202 1 0 64 1 0 669 3 8 5 1 0 21 chain 31529 chr17 83257441 + 31183594 31184014 MLT2A1 477 + 10 469 40717 136 1 0 23 13 11 24 0 1 173 7 48 43 chain 315553 chr17 83257441 + 31184018 31188574 HERVL-int 5654 + 0 5654 6492 16 2 0 162 0 1 70 3 0 85 330 0 642 0 1687 256 0 2 74 1 3 47 0 1 4 2 1 335 1 0 183 1 0 5 12 13 382 0 3 203 0 1 117 1 8 240 303 0 11 1 0 199 0 25 30 0 1 9 0 1 126 2 0 133 0 8 13 18 8 226 1 4 142 1 0 19 0 6 16 9 10 49 1 4 73 chain 32941 chr17 83257441 + 31188574 31189019 MLT2A1 477 + 0 477 39558 168 5 2 9 0 1 205 26 60 32 chain 3749 chr17 83257441 + 31351280 31351334 L1MA8 2339 + 2210 2263 93242 47 1 0 6 chain 6875 chr17 83257441 + 31550073 31550145 tRNA-Thr-ACG 72 + 0 72 78054 72 chain 28141 chr17 83257441 + 31605455 31605756 AluYa5 310 + 0 300 44652 97 1 0 203 chain 25196 chr17 83257441 + 31632086 31632444 LTR7B 505 + 0 491 48952 44 0 15 46 0 10 56 1 0 4 8 77 59 0 41 85 18 17 37 chain 38621 chr17 83257441 + 31633118 31633609 MER9a3 513 + 15 513 35626 4 0 1 90 0 1 68 12 13 64 1 0 125 1 5 49 0 1 77 chain 360760 chr17 83257441 + 31634265 31638526 HERVK9-int 4720 + 334 4720 5794 199 0 1 307 0 9 37 0 67 666 0 1 715 10 7 1139 0 10 128 6 14 401 0 34 297 1 0 234 1 0 120 chain 39410 chr17 83257441 + 31638539 31639019 MER9a3 513 + 15 513 35071 31 0 1 63 0 1 147 2 17 161 0 1 76 chain 47026 chr17 83257441 + 31643137 31643741 LTR12 884 + 0 866 30649 25 1 0 33 0 111 28 0 25 95 0 25 36 2 0 157 0 1 12 0 103 215 chain 10675 chr17 83257441 + 31643890 31644014 MER41B 635 + 511 635 69088 124 chain 14419 chr17 83257441 + 31647384 31647563 LOR1b 457 + 232 411 63006 179 chain 23762 chr17 83257441 + 31713853 31714259 L1MA2 4263 + 3712 4114 51175 78 1 0 6 13 10 152 1 0 6 2 1 21 24 34 38 15 8 39 1 0 9 chain 6693 chr17 83257441 + 31731800 31732000 LTR12 884 + 229 386 78661 26 25 0 16 0 25 25 24 0 15 24 8 21 2 1 12 2 0 8 chain 62703 chr17 83257441 + 31762038 31762862 LTR12 884 + 0 884 25709 21 7 6 51 0 66 131 1 0 65 16 11 27 2 0 296 0 4 31 1 0 175 chain 464923 chr17 83257441 + 31762890 31768722 HERV9-int 5642 + 0 5642 3996 23 4 5 4 1 0 302 0 2 91 3 5 363 1 0 50 4 8 107 85 0 105 80 0 42 3 0 710 0 1 422 1 2 891 1 0 1377 0 2 73 0 1 567 1 4 74 1 0 226 5 3 39 4 2 24 1 0 59 1 0 14 28 5 19 4 0 3 2 0 17 chain 55848 chr17 83257441 + 31771334 31772128 LTR12 884 + 0 884 27610 25 1 0 30 0 107 23 0 91 46 1 0 54 2 0 340 104 0 168 chain 427337 chr17 83257441 + 31780931 31785914 L1PA4 6152 + 10 5521 4784 86 0 525 434 0 1 5 1 0 82 6 8 25 9 0 203 0 1 442 0 1 415 1 2 123 0 1 851 0 1 2088 0 5 212 chain 43346 chr17 83257441 + 31793698 31794171 L1PA2 6032 + 5558 6032 32538 217 0 1 256 chain 10324 chr17 83257441 + 31812643 31812813 THE1B 368 + 2 172 69755 11 2 0 34 0 1 54 32 33 37 chain 4269 chr17 83257441 + 31836883 31836935 L1MB5 1630 + 1250 1302 89705 52 chain 6282 chr17 83257441 + 31848678 31848768 L1PB1 5432 + 5345 5430 80060 25 1 0 23 1 0 11 1 0 18 1 0 4 1 0 4 chain 2604 chr17 83257441 + 32023479 32023523 MIR 256 + 6 52 102975 12 5 7 27 chain 7544 chr17 83257441 + 32160122 32160216 MER52D 1964 + 1114 1207 76017 56 1 0 37 chain 25505 chr17 83257441 + 32165062 32165365 AluY 311 + 4 311 48478 66 0 3 59 0 1 178 chain 148996 chr17 83257441 + 32178218 32180647 SVA_A 1864 + 29 1861 12419 373 190 0 56 0 39 79 5 4 34 3 0 11 37 0 138 75 0 61 191 0 62 1 0 27 2 0 111 2 0 120 154 0 93 10 8 466 0 22 128 chain 11076 chr17 83257441 + 32178592 32178773 SVA_A 1864 + 519 700 25249 181 chain 2264 chr17 83257441 + 32178969 32179006 SVA_A 1864 + 812 849 25249 37 chain 4590 chr17 83257441 + 32179144 32179219 SVA_A 1864 + 912 947 25249 15 40 0 20 chain 1926 chr17 83257441 + 32179165 32179199 SVA_A 1864 + 404 438 27799 34 chain 9240 chr17 83257441 + 32179280 32179431 SVA_A 1864 + 1008 1155 25249 8 8 5 122 1 0 12 chain 8724 chr17 83257441 + 32179796 32179950 SVA_A 1864 + 812 960 27799 28 2 0 46 7 6 50 8 5 13 chain 12870 chr17 83257441 + 32293003 32293226 L1MB3 1562 + 1271 1466 65305 18 2 0 62 1 0 70 1 0 4 38 13 22 0 1 5 chain 4881 chr17 83257441 + 32436831 32436890 MER41D 557 + 1 60 86257 59 chain 24329 chr17 83257441 + 32442651 32442978 MER1B 344 + 2 337 50288 14 1 2 137 0 1 115 5 11 55 chain 4517 chr17 83257441 + 32508225 32508281 MLT1A 405 + 319 374 88223 18 1 0 37 chain 2743 chr17 83257441 + 32539963 32540041 L1MB8 1703 + 720 799 102010 27 28 31 5 2 0 16 chain 3732 chr17 83257441 + 32616809 32616854 MLT1G 592 + 141 186 93381 45 chain 28632 chr17 83257441 + 32694433 32694734 AluYb8 318 + 14 315 43897 301 chain 36769 chr17 83257441 + 32739237 32739650 L1PA5 6144 + 5728 6142 36908 273 0 1 140 chain 8432 chr17 83257441 + 32772919 32773029 LTR7B 505 + 0 133 73839 22 0 23 88 chain 82689 chr17 83257441 + 32773029 32774241 HERVH-int 3825 + 2 1443 21086 331 1 0 63 130 374 8 1 0 393 1 4 30 0 8 16 15 0 202 9 0 12 chain 26353 chr17 83257441 + 32795627 32796007 MER48 407 + 0 405 47196 30 0 1 4 1 0 43 12 4 13 0 13 37 16 36 224 chain 70297 chr17 83257441 + 32849054 32849822 L1PA2 6032 + 5258 6028 23924 538 0 2 230 chain 559632 chr17 83257441 + 32887137 32893164 L1PA2 6032 + 3 6031 184 482 0 1 5545 chain 5902 chr17 83257441 + 32917296 32917403 MER51A 677 + 181 282 81480 18 10 0 31 7 11 41 chain 10927 chr17 83257441 + 32924275 32924771 MER51-int 1546 + 32 924 68655 20 56 49 17 0 1 29 2 1 37 6 0 8 6 0 12 62 471 64 160 166 17 chain 36157 chr17 83257441 + 32964049 32964510 LTR71A 459 + 0 459 37312 189 1 0 5 12 13 241 2 0 11 chain 343046 chr17 83257441 + 32965864 32969754 L1PA5 6144 + 2254 6131 6008 55 7 0 5 2 0 959 7 6 1349 1 0 940 0 2 417 9 0 7 3 8 129 chain 37583 chr17 83257441 + 32973870 32974333 LTR71A 459 + 0 459 36345 133 1 0 69 2 1 242 2 0 14 chain 72499 chr17 83257441 + 32977028 32977809 L1PA2 6032 + 5245 6026 23431 781 chain 7560 chr17 83257441 + 33091877 33091974 MER3 215 + 97 194 75960 97 chain 27290 chr17 83257441 + 33105551 33105962 THE1B-int 1605 + 35 393 45838 98 53 0 169 1 0 4 1 2 85 chain 24523 chr17 83257441 + 33150587 33150872 AluYa5 310 + 20 304 49994 32 0 1 11 2 0 240 chain 98419 chr17 83257441 + 33186014 33187564 HSMAR1 1287 + 0 1263 18490 57 1 0 32 306 0 40 1 3 261 0 20 144 2 1 179 0 1 434 2 0 91 chain 3683 chr17 83257441 + 33235738 33235781 MLT1C-int 1263 + 1079 1122 93722 43 chain 4166 chr17 83257441 + 33243919 33243966 MIR3 191 + 70 117 90342 47 chain 26357 chr17 83257441 + 33418764 33419113 L1PA7 6471 + 6122 6468 47187 154 2 1 31 1 2 87 0 2 5 2 0 52 3 0 12 chain 4759 chr17 83257441 + 33447786 33447880 L1MA4 2864 + 2746 2830 86913 17 1 0 3 1 0 43 16 8 13 chain 39934 chr17 83257441 + 33467373 33467951 MER4B 649 + 0 619 34711 118 9 8 31 5 47 57 2 0 105 8 3 22 0 1 27 5 0 7 1 0 63 0 11 62 1 0 7 0 1 9 0 1 39 chain 42999 chr17 83257441 + 33487550 33488083 MLT2A2 560 + 0 560 32772 107 3 4 84 0 3 5 0 1 189 1 0 78 0 23 66 chain 3438 chr17 83257441 + 33495164 33495200 MER96 175 - 103 139 95753 36 chain 36083 chr17 83257441 + 33542907 33543299 L1PA2 6032 + 5640 6032 37347 392 chain 42725 chr17 83257441 + 33564651 33565149 MER9a1 513 + 0 513 32933 184 0 1 90 0 1 169 0 13 55 chain 10709 chr17 83257441 + 33617143 33617370 L1PA15 4387 + 4142 4366 69033 38 6 5 19 5 1 12 1 0 12 1 2 36 5 15 32 3 1 11 11 6 25 1 0 9 chain 3652 chr17 83257441 + 33757950 33757995 Zaphod 902 + 295 340 94016 45 chain 83923 chr17 83257441 + 33787943 33789014 L1PA8A 6298 + 5212 6291 20825 201 0 1 33 1 0 42 11 16 63 0 2 74 0 1 230 23 25 284 9 7 100 chain 13054 chr17 83257441 + 33865619 33865761 L1HS 6032 + 5890 6032 65018 142 chain 526516 chr17 83257441 + 33877135 33883089 L1PA4 6152 + 0 5971 1978 29 0 3 383 0 10 811 0 1 1080 0 3 889 1 0 384 8 5 1005 0 2 919 0 2 445 chain 21888 chr17 83257441 + 33988293 33988570 THE1B 368 + 83 368 53983 119 2 0 89 1 0 36 0 11 30 chain 5723 chr17 83257441 + 34009400 34009640 MER33 330 + 130 330 82243 8 46 0 20 7 6 48 84 91 27 chain 7015 chr17 83257441 + 34021053 34021220 L1PB1 5432 + 5266 5412 77550 14 2 1 15 1 0 6 18 7 17 11 8 12 2 0 24 1 0 21 1 0 13 1 0 8 chain 18695 chr17 83257441 + 34022835 34023151 MSTA 426 + 27 400 57908 73 8 47 58 3 1 8 3 5 14 12 10 44 10 30 83 chain 466704 chr17 83257441 + 34030377 34035721 L1PA4 6152 + 8 5329 3939 452 6 0 120 1 0 1935 1 0 684 4 5 237 0 3 1258 0 3 231 22 0 393 chain 407754 chr17 83257441 + 34060063 34065500 L1PB1 5432 + 19 5424 5049 27 9 10 347 1 0 470 1 2 520 1 0 7 2 0 5 26 11 550 0 3 304 2 1 100 0 4 119 3 1 41 5 6 240 8 9 44 9 8 415 0 1 463 9 5 226 6 5 488 1 3 37 7 4 121 8 5 357 0 3 122 3 2 9 1 0 20 1 0 13 20 15 5 2 0 53 2 1 16 1 0 26 6 24 9 11 0 9 5 4 18 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 4381 chr17 83257441 + 34135551 34135602 MER5B 177 - 124 175 88994 51 chain 27512 chr17 83257441 + 34149749 34150179 L1MA8 2339 + 1653 2073 45564 94 1 0 84 0 1 8 4 0 47 0 1 9 32 29 28 3 0 51 7 6 62 chain 29470 chr17 83257441 + 34183190 34183623 LTR7Y 441 + 0 441 42638 103 9 0 57 68 84 127 1 2 68 chain 293811 chr17 83257441 + 34183623 34187313 HERVH-int 3825 + 0 3825 7019 212 0 11 309 69 0 38 1 0 9 2 1 24 28 0 14 14 31 7 1 0 64 21 0 9 2 1 49 1 0 444 15 0 231 0 2 128 1 0 97 8 35 1354 9 11 39 8 218 254 3 8 225 chain 3598 chr17 83257441 + 34184173 34184213 HERVH-int 3825 + 436 476 86880 40 chain 27792 chr17 83257441 + 34188573 34188994 LTR7Y 441 + 0 441 45192 98 16 7 55 68 84 98 0 13 86 chain 12165 chr17 83257441 + 34191180 34191316 L1PA5 6144 + 6005 6141 66538 136 chain 28685 chr17 83257441 + 34229735 34230116 L1PA15 4387 + 2807 3186 43823 11 0 2 130 2 0 227 2 0 9 chain 452975 chr17 83257441 + 34277450 34283023 L1PA7 6471 + 715 6310 4304 30 9 14 400 1 2 50 0 1 547 2 0 151 0 1 35 1 0 89 1 0 21 2 0 331 3 33 99 0 3 115 23 0 669 0 4 219 1 0 677 2 0 591 12 14 326 0 1 485 1 5 237 3 0 100 0 5 41 1 0 38 1 2 259 chain 6962 chr17 83257441 + 34318448 34318577 L1MC2 1988 + 1544 1669 77736 68 31 27 30 chain 29683 chr17 83257441 + 34327831 34328166 L1PA7 6471 + 6122 6457 42385 335 chain 20039 chr17 83257441 + 34381388 34381658 L1PA8 5853 + 5575 5849 56327 34 2 0 73 0 3 8 1 8 9 2 0 34 2 1 15 1 0 89 chain 21611 chr17 83257441 + 34409766 34410125 L1PA14 3548 + 3121 3465 54340 10 2 0 6 1 0 11 0 1 72 1 0 111 1 0 10 5 1 19 19 17 11 1 0 8 1 0 19 1 0 39 1 0 4 1 0 5 chain 9617 chr17 83257441 + 34432140 34432299 MLT1A0 366 + 37 200 71229 20 2 3 79 8 7 8 0 2 8 6 8 28 chain 4208 chr17 83257441 + 34509071 34509127 L1MC5 759 + 237 292 90073 30 1 0 25 chain 10243 chr17 83257441 + 34574943 34575072 MER85 139 + 0 139 69913 90 0 10 39 chain 37040 chr17 83257441 + 34900781 34901363 MER41A 554 + 0 546 36715 59 7 0 45 1 2 123 29 31 77 0 1 47 59 26 135 chain 15901 chr17 83257441 + 34904291 34904489 MER47A 366 + 104 302 61157 198 chain 58824 chr17 83257441 + 34907625 34908282 SVA_D 2077 + 1413 2073 26732 31 0 1 9 0 1 4 0 4 6 3 0 604 chain 132414 chr17 83257441 + 34919132 34920702 THE1A-int 1579 + 0 1569 13788 931 3 2 160 0 1 468 1 0 7 chain 2704 chr17 83257441 + 35071848 35071911 L1MD2 1676 + 1332 1395 102325 19 4 5 18 7 6 15 chain 7899 chr17 83257441 + 35077760 35077858 MER30 238 + 141 236 75111 58 3 0 37 chain 11736 chr17 83257441 + 35118115 35118291 MER20 218 + 6 176 67339 76 9 7 69 4 0 18 chain 14930 chr17 83257441 + 35143921 35144130 MER30 238 + 0 231 62352 104 7 23 26 1 7 71 chain 4290 chr17 83257441 + 35179297 35179348 L1PA6 6164 - 1741 1792 88098 51 chain 47877 chr17 83257441 + 35179348 35179910 L1PA6 6164 + 5602 6162 30335 400 1 2 43 1 0 41 4 0 63 0 2 9 chain 83136 chr17 83257441 + 35199219 35200269 MER11C 1089 + 0 1063 20996 55 5 8 92 1 0 95 1 2 65 1 5 210 24 25 131 0 4 7 1 0 38 0 1 127 0 1 197 chain 3581 chr17 83257441 + 35217578 35217618 MER65C 458 + 413 453 94582 40 chain 502375 chr17 83257441 + 35274370 35281469 L1PA4 6152 + 0 5977 3045 124 20 6 12 11 25 414 1 2 869 1 2 40 0 35 358 1 0 100 0 136 1048 3 1 807 1307 4 368 0 4 501 0 2 903 0 5 211 chain 25211 chr17 83257441 + 35296586 35296935 THE1A 353 + 0 353 48928 113 1 0 119 8 9 38 1 4 4 0 1 65 chain 56694 chr17 83257441 + 35296935 35297636 THE1A-int 1579 + 0 710 27365 20 0 2 382 0 7 299 chain 517546 chr17 83257441 + 35300857 35310331 L1PA7 6471 + 5 6460 2395 405 0 2 22 11 12 69 1 0 163 20 21 154 1 0 1136 0 1 36 4 5 284 1 2 106 2 1 209 1 0 775 3139 101 781 12 13 146 0 1 239 1 3 111 0 2 259 2 1 4 0 1 120 1 2 322 0 1 108 0 5 75 1 0 12 1 4 524 0 1 216 chain 50041 chr17 83257441 + 35306696 35307386 LTR30 714 + 0 704 29550 249 0 5 189 7 18 158 2 0 10 33 34 29 1 0 12 chain 12714 chr17 83257441 + 35310377 35310534 L1M1 2793 + 2445 2602 65594 157 chain 32664 chr17 83257441 + 35324541 35324983 LOR1b 457 + 0 457 39792 27 5 15 101 4 0 36 5 14 264 chain 5305 chr17 83257441 + 35325519 35325581 L1PB 1623 + 932 994 84169 62 chain 70865 chr17 83257441 + 35341378 35342251 MER11D 897 + 0 897 23787 575 5 28 70 0 1 223 chain 2910 chr17 83257441 + 35347392 35347427 LTR43 600 + 0 35 100758 35 chain 133618 chr17 83257441 + 35369589 35371667 L1MA1 4479 + 2123 4190 13681 33 0 1 8 4 0 10 0 1 131 0 4 106 0 1 91 1 2 53 0 2 13 0 4 23 15 40 21 2 1 103 2 0 33 1 0 154 1 0 27 2 0 38 0 6 107 2 1 15 9 7 16 4 0 76 1 0 12 1 0 114 0 4 6 20 11 121 2 0 143 1 0 52 1 0 25 2 0 16 1 0 56 95 91 45 1 0 4 4 1 126 1 0 24 11 9 26 25 19 16 7 0 18 chain 39508 chr17 83257441 + 35381611 35382070 LTR2 463 + 0 463 35005 130 0 4 329 chain 540325 chr17 83257441 + 35393955 35399945 L1PA3long 6157 + 4 6149 1320 58 0 11 79 0 1 107 0 1 481 1 0 25 9 137 507 0 9 1289 0 5 3131 0 1 303 chain 110307 chr17 83257441 + 35414596 35416141 L1PB2 3958 + 2298 3838 17036 107 0 3 73 1 0 178 0 3 239 52 49 8 0 2 303 0 4 40 2 0 56 1 0 14 6 1 61 2 0 12 1 0 4 1 0 52 0 2 108 1 0 64 1 0 93 2 1 63 chain 3938 chr17 83257441 + 35436503 35436702 L1MC4 1079 + 536 735 91845 14 25 26 19 102 101 39 chain 32101 chr17 83257441 + 35453455 35453896 MLT2A1 477 + 0 477 40273 142 0 1 7 19 23 209 6 38 38 1 0 19 chain 209796 chr17 83257441 + 35453896 35456488 HERVL-int 5654 + 0 5646 9355 34 0 1 207 6 8 228 0 3 167 15 19 178 0 1 221 9 3051 261 1 2 588 0 3 246 3 0 95 0 2 119 0 1 181 3 0 30 chain 18646 chr17 83257441 + 35456496 35456728 MLT2A1 477 + 0 237 57949 142 0 1 25 1 5 64 chain 10336 chr17 83257441 + 35500299 35500447 LTR2 463 + 0 152 69722 36 0 1 66 0 19 6 16 0 24 chain 407099 chr17 83257441 + 35502829 35507907 Harlequin-int 5206 + 133 5206 5055 15 0 1 145 2 1 6 16 0 81 0 1 68 4 3 30 0 1 24 18 19 154 1 0 162 0 1 26 1 0 97 5 0 135 0 1 424 1 0 36 10 10 151 0 1 257 0 1 4 2 1 550 1 2 4 1 0 14 4 0 5 0 3 45 69 72 76 22 30 200 0 3 272 0 3 212 5 1 231 1 2 1135 0 1 356 chain 37715 chr17 83257441 + 35507907 35508365 LTR2 463 + 0 463 36263 56 0 1 72 0 3 249 0 1 81 chain 147694 chr17 83257441 + 35517226 35519350 L1PA8 5853 + 4019 5848 12505 140 0 3 418 0 1 96 0 1 129 0 3 131 0 1 68 2 0 50 306 0 22 0 2 402 6 16 62 1 0 46 2 0 68 2 1 9 1 0 6 1 0 46 3 2 18 2 1 87 chain 469227 chr17 83257441 + 35524248 35529853 L1PA7 6471 + 824 6469 3882 122 0 1 305 13 32 751 1 0 353 0 2 8 0 1 123 1 0 102 0 1 10 1 2 969 1 0 403 1 0 8 4 14 16 2 1 526 1 0 100 0 4 303 6 12 184 0 2 442 1 0 48 1 0 476 6 7 317 chain 17597 chr17 83257441 + 35530137 35530354 AluSc 308 + 72 288 59125 59 1 0 157 chain 28932 chr17 83257441 + 35552267 35552593 LTR17 781 + 0 326 43431 326 chain 11976 chr17 83257441 + 35628050 35628276 MER2 342 + 87 327 66875 29 19 27 74 15 20 58 11 12 20 chain 22011 chr17 83257441 + 35730194 35730481 AluSc 308 + 11 296 53817 42 13 11 232 chain 3540 chr17 83257441 + 35750858 35750925 MIRb 242 + 101 170 94937 35 15 17 17 chain 3768 chr17 83257441 + 35776515 35776558 MER53 195 - 128 171 93079 43 chain 12672 chr17 83257441 + 35886740 35886927 MER44A 345 + 121 312 65676 53 0 4 57 0 5 15 10 0 9 3 8 40 chain 11426 chr17 83257441 + 35888189 35889718 7SK 245 + 0 245 67870 59 1366 82 104 chain 23696 chr17 83257441 + 35897645 35897945 AluSc 308 + 0 295 51282 78 0 5 160 9 0 14 2 1 37 chain 26083 chr17 83257441 + 35904347 35904714 MER4B 649 + 0 409 47602 111 1 0 19 24 63 172 0 4 40 chain 4590 chr17 83257441 + 35932215 35932313 LTR25 836 + 496 557 87841 48 37 0 13 chain 3548 chr17 83257441 + 35935597 35935646 LTR25 836 + 59 107 94864 9 2 1 38 chain 3549 chr17 83257441 + 35944243 35944283 MLT1K 546 + 496 536 94855 40 chain 12238 chr17 83257441 + 35994311 35994462 L1PA16 3655 + 1846 1997 66398 151 chain 17967 chr17 83257441 + 36011432 36011842 HUERS-P2-int 2744 + 2349 2741 58688 91 1 0 4 21 24 64 2 0 12 4 0 10 26 26 12 1 0 5 28 25 31 3 0 13 10 9 14 1 0 8 3 1 5 2 0 12 2 0 19 0 1 6 chain 4915 chr17 83257441 + 36050642 36050703 L1PA17 2846 + 22 82 86085 14 1 0 46 chain 21345 chr17 83257441 + 36111508 36111839 MLT2A1 477 + 19 477 54712 123 8 9 18 1 5 82 0 92 32 1 0 5 11 43 29 1 0 20 chain 325501 chr17 83257441 + 36111839 36115864 HERVL-int 5654 + 0 5654 6297 210 1 0 147 1 3 379 3 5 110 69 0 12 0 5 426 0 1 4 1 0 9 0 1179 52 0 1 459 0 7 491 0 1 87 1 15 173 0 12 574 0 1 297 0 484 6 0 1 63 1 2 5 13 0 213 0 1 82 1 2 135 chain 31954 chr17 83257441 + 36115864 36116344 MLT2A1 477 + 0 477 40378 72 0 2 68 0 1 25 1 5 212 62 53 20 1 0 19 chain 5116 chr17 83257441 + 36116345 36116404 LTR73 568 + 452 511 85076 59 chain 34547 chr17 83257441 + 36119056 36119509 MER1A 529 + 64 520 38321 17 0 4 11 2 0 361 13 14 49 chain 84390 chr17 83257441 + 36120552 36121631 L1PA8 5853 + 4782 5853 20734 229 2 0 82 0 1 425 0 3 42 1 0 45 2 0 70 1 0 8 5 4 17 0 2 30 2 1 15 5 4 16 5 0 77 chain 74184 chr17 83257441 + 36140052 36141024 LTR5_Hs 974 + 0 974 23040 285 0 1 181 0 1 173 16 15 123 11 7 33 8 15 19 20 18 103 chain 3605 chr17 83257441 + 36217319 36217370 MLT2A1 477 + 198 250 94386 12 1 2 38 chain 392152 chr17 83257441 + 36217686 36222486 HERVL-int 5654 + 0 4757 5287 701 0 1 135 0 1 13 24 3 23 48 0 198 0 1 1221 0 3 18 0 1 141 12 4 263 0 3 770 0 1 56 0 1 438 0 6 432 6 5 180 0 17 121 chain 22795 chr17 83257441 + 36231354 36231601 L1PA3long 6157 + 5910 6157 52676 247 chain 6124 chr17 83257441 + 36345559 36345698 Tigger3b 1229 + 58 319 80641 49 34 161 8 4 0 14 1 0 29 chain 22795 chr17 83257441 + 36355225 36355472 L1PA3long 6157 + 5910 6157 52675 247 chain 2842 chr17 83257441 + 36608916 36608948 MIRc 230 + 146 178 101291 32 chain 23511 chr17 83257441 + 36615381 36615674 AluSp 311 + 3 297 51574 60 0 2 67 1 0 165 chain 5708 chr17 83257441 + 36639770 36639877 MER5A 189 + 0 119 82302 21 1 0 6 0 1 13 13 23 12 3 5 38 chain 29600 chr17 83257441 + 36775279 36775724 L1PA15 4387 + 3855 4287 42483 35 2 0 43 1 0 51 0 1 15 0 1 75 1 0 28 1 0 27 2 1 53 1 0 21 4 0 12 1 0 49 6 3 17 chain 3742 chr17 83257441 + 36776418 36776466 MLT1J1 437 + 116 163 93318 29 1 0 18 chain 70478 chr17 83257441 + 36852109 36852955 L1PA8A 6298 + 5442 6291 23873 47 1 7 520 3 0 275 chain 40675 chr17 83257441 + 36915594 36916070 L1PA7 6471 + 5985 6462 34166 152 1 2 323 chain 56288 chr17 83257441 + 36997306 36998205 L1PB1 5432 + 4540 5413 27488 69 8 13 83 0 2 339 0 1 5 1 0 51 7 6 5 1 0 20 1 0 13 16 11 9 2 0 46 0 1 6 19 17 44 1 0 15 4 0 7 15 6 18 16 13 6 2 0 24 1 0 21 2 1 12 1 0 9 chain 24367 chr17 83257441 + 37073046 37073355 L1PA8A 6298 + 5980 6290 50221 166 0 4 37 1 0 4 7 5 94 chain 12410 chr17 83257441 + 37130443 37130581 L1PA4 6152 + 6013 6151 66121 138 chain 25700 chr17 83257441 + 37282030 37282453 MSTB 430 + 0 430 48170 24 1 0 98 0 1 75 78 85 147 chain 23336 chr17 83257441 + 37324393 37324685 AluSp 311 + 10 297 51870 13 9 5 97 1 0 172 chain 70744 chr17 83257441 + 37332948 37333752 HERV17-int 4347 + 3547 4347 23818 300 0 1 95 5 0 404 chain 27454 chr17 83257441 + 37336355 37336681 LTR17 781 + 0 326 45631 326 chain 5916 chr17 83257441 + 37336982 37337068 MER5A 189 + 2 93 81415 29 3 9 33 1 0 20 chain 25723 chr17 83257441 + 37346723 37347025 THE1B-int 1605 + 1295 1597 48139 302 chain 26170 chr17 83257441 + 37347033 37347387 THE1B 368 + 0 368 47474 30 9 24 118 3 2 194 chain 76558 chr17 83257441 + 37379593 37380430 L1PA3long 6157 + 5315 6152 22425 837 chain 117855 chr17 83257441 + 37565346 37566653 SVA_D 2077 + 337 2075 15910 541 0 83 75 0 2 11 0 352 665 6 0 9 chain 80714 chr17 83257441 + 37573705 37574839 L1MA3 4352 + 2539 3665 21486 50 8 7 64 6 1 26 0 2 119 15 0 168 2 7 65 16 17 70 0 1 146 0 4 379 chain 3658 chr17 83257441 + 37611989 37612037 Tigger3 1187 + 690 742 93933 7 0 1 31 0 3 10 chain 62983 chr17 83257441 + 37680221 37680927 L1PA5 6144 + 5433 6140 25631 556 0 1 150 chain 45472 chr17 83257441 + 37781193 37781828 Tigger1 2417 + 1164 1781 31321 57 0 1 254 2 3 10 0 1 163 7 24 60 38 0 44 chain 83224 chr17 83257441 + 37857994 37859051 MER11C 1089 + 0 1069 20979 228 0 1 35 0 3 267 65 65 176 0 8 286 chain 6595 chr17 83257441 + 37859240 37859377 MER47B 469 + 178 360 78987 36 32 78 10 2 1 57 chain 7029 chr17 83257441 + 37866858 37867033 L1PB1 5432 + 5270 5422 77502 11 3 0 15 1 0 4 23 12 14 9 6 14 2 0 24 2 1 20 1 0 13 1 0 18 chain 26927 chr17 83257441 + 37878733 37879025 AluYk11 308 + 0 292 46368 292 chain 76026 chr17 83257441 + 37912632 37913899 L1PA8 5853 + 4859 5853 22562 23 12 6 120 0 5 265 0 2 15 272 4 265 1 0 6 0 1 39 2 0 69 1 0 14 1 0 47 2 1 16 9 8 88 chain 6124 chr17 83257441 + 37946168 37946307 Tigger3b 1229 + 58 319 80640 49 34 161 8 4 0 14 1 0 29 chain 22664 chr17 83257441 + 37955843 37956090 L1PA3long 6157 + 5910 6157 52876 247 chain 6124 chr17 83257441 + 38025706 38025845 Tigger3b 1229 + 58 319 80639 49 34 161 8 4 0 14 1 0 29 chain 22664 chr17 83257441 + 38035369 38035616 L1PA3long 6157 + 5910 6157 52875 247 chain 6124 chr17 83257441 + 38149663 38149802 Tigger3b 1229 + 58 319 80638 49 34 161 8 4 0 14 1 0 29 chain 22664 chr17 83257441 + 38159336 38159583 L1PA3long 6157 + 5910 6157 52874 247 chain 17946 chr17 83257441 + 38195445 38195653 L1PA6 6164 + 5936 6144 58706 208 chain 59258 chr17 83257441 + 38253407 38254040 SVA_F 1814 + 1181 1814 26580 633 chain 29313 chr17 83257441 + 38264510 38264821 AluYa5 310 + 0 310 42865 132 1 0 178 chain 11572 chr17 83257441 + 38340584 38341065 MER39 703 + 548 703 67621 39 330 0 61 0 4 51 chain 13317 chr17 83257441 + 38377254 38377469 Tigger4a 237 + 1 224 64594 24 0 1 8 5 12 65 8 0 9 8 16 88 chain 164483 chr17 83257441 + 38630208 38632267 SVA_D 2077 + 12 2060 11458 530 0 80 101 0 3 35 3 0 147 11 9 27 21 10 39 1 0 27 0 100 268 0 1 1 137 0 11 41 0 659 chain 1269 chr17 83257441 + 38631425 38631453 SVA_D 2077 + 1043 1071 52610 28 chain 6802 chr17 83257441 + 38631453 38631556 SVA_D 2077 + 1423 1476 65783 13 50 0 40 chain 3711 chr17 83257441 + 38631476 38631516 SVA_D 2077 + 1044 1084 66382 40 chain 1336 chr17 83257441 + 38631567 38631608 SVA_D 2077 + 1262 1303 56769 41 chain 2989 chr17 83257441 + 38737951 38737984 MER5A1 166 + 98 131 99974 33 chain 17740 chr17 83257441 + 38812428 38812640 AluSp 311 + 83 295 58962 212 chain 6454 chr17 83257441 + 38867644 38867716 tRNA-Cys-TGY 72 + 0 72 79503 72 chain 3943 chr17 83257441 + 39014934 39014984 MER21A 919 + 86 155 91813 19 0 19 31 chain 13831 chr17 83257441 + 39020115 39020292 Tigger1 2417 + 1628 1808 63826 47 0 1 14 0 2 116 chain 22370 chr17 83257441 + 39027887 39028172 AluSc8 310 + 0 297 53313 20 1 5 52 2 1 54 0 3 31 0 6 125 chain 45217 chr17 83257441 + 39052076 39052723 L1PB1 5432 + 4550 5194 31471 63 7 8 10 0 2 72 0 2 97 11 12 14 0 1 272 7 6 5 1 0 24 1 0 9 16 11 11 2 0 25 chain 3972 chr17 83257441 + 39130498 39130555 L1MB5 1630 + 1557 1613 91624 43 2 1 12 chain 37084 chr17 83257441 + 39168493 39169425 LTR12F 595 + 0 595 36691 67 0 37 39 3 1 24 48 47 102 358 0 47 0 1 25 2 0 52 12 1 126 7 6 20 chain 8528 chr17 83257441 + 39309016 39309158 LTR49-int 1717 + 1220 1362 73628 4 1 0 19 1 6 31 17 13 69 chain 5850 chr17 83257441 + 39332243 39332315 MER68 562 + 0 72 81695 72 chain 118644 chr17 83257441 + 39333170 39334488 SVA_B 1603 + 46 1603 15784 744 0 241 566 2 0 6 chain 38896 chr17 83257441 + 39334918 39335396 LTR15 485 + 0 478 35433 107 0 1 17 4 0 27 0 2 122 0 4 156 1 0 6 2 0 36 chain 136729 chr17 83257441 + 39336993 39338537 SVA_D 2077 + 42 2065 13361 500 0 80 295 0 391 35 0 1 12 0 1 31 11 14 434 1 2 207 0 2 18 chain 3434 chr17 83257441 + 39348119 39348156 MER4E1 777 + 663 700 95793 37 chain 3273 chr17 83257441 + 39349955 39349999 Tigger4b 360 + 133 175 97271 28 2 0 14 chain 13012 chr17 83257441 + 39447446 39447647 Tigger4b 360 + 160 360 65100 6 0 2 5 2 0 115 17 0 13 0 16 43 chain 19023 chr17 83257441 + 39455319 39455590 AluSg7 307 + 21 288 57529 37 2 0 66 21 19 145 chain 24640 chr17 83257441 + 39456286 39456574 AluSq10 312 + 11 300 49815 85 0 1 203 chain 8458 chr17 83257441 + 39682262 39682415 LTR54B 464 + 275 423 73780 16 11 8 34 0 1 15 1 0 11 6 5 27 1 0 31 chain 21801 chr17 83257441 + 39693131 39693448 Tigger2a 444 + 0 309 54099 50 5 6 43 22 13 197 chain 7703 chr17 83257441 + 39698848 39698946 MER53 195 + 6 105 75623 24 0 1 74 chain 4093 chr17 83257441 + 39710674 39710769 MIR 256 + 28 139 90826 24 31 49 5 2 0 33 chain 16920 chr17 83257441 + 39822245 39822568 THE1D 372 + 0 332 59887 15 0 2 39 15 9 95 65 81 70 4 1 20 chain 113845 chr17 83257441 + 39822936 39824512 THE1D-int 1627 + 12 1621 16575 97 54 0 283 0 81 68 0 2 234 4 10 150 8 9 208 7 6 27 5 3 5 1 0 367 1 0 4 0 1 10 1 0 13 0 3 15 4 3 10 chain 25859 chr17 83257441 + 39917413 39917823 LTR7B 505 + 0 505 47926 105 0 10 49 26 38 32 2 23 26 0 1 28 0 41 84 33 43 25 chain 23499 chr17 83257441 + 39998622 40004044 Tigger1 2417 + 108 2308 51594 54 9 8 17 0 6 59 426 125 13 3 1 42 1 0 14 3184 1289 46 13 16 10 0 1 85 0 1 41 0 2 20 1293 263 28 5 0 59 chain 124783 chr17 83257441 + 40010750 40012735 LTR12C 1709 + 0 1688 14737 295 1 0 88 4 0 81 0 5 108 2 1 150 0 1 4 1 0 104 1 0 92 502 203 92 0 4 460 chain 27493 chr17 83257441 + 40046463 40046754 AluYa5 310 + 0 290 45590 123 1 0 167 chain 58640 chr17 83257441 + 40197896 40198746 LTR12 884 + 0 872 26777 103 38 0 16 0 25 37 0 25 49 0 25 77 24 0 21 2 0 40 0 18 115 0 4 125 1 0 62 0 2 54 0 2 20 18 4 48 chain 7893 chr17 83257441 + 40243222 40243316 HY4 93 + 0 93 75133 66 1 0 27 chain 22020 chr17 83257441 + 40258340 40258601 AluSc5 308 + 29 290 53807 185 0 1 42 2 1 32 chain 23289 chr17 83257441 + 40297291 40297616 L1PA8 5853 + 5506 5847 51945 15 1 2 39 1 0 48 2 0 71 1 0 37 6 26 16 2 1 86 chain 31018 chr17 83257441 + 40372996 40373425 MLT2A1 477 + 0 477 41107 48 0 8 114 4 1 8 0 1 24 0 1 58 4 11 61 2 0 50 3 43 10 4 0 39 chain 108923 chr17 83257441 + 40375652 40377266 LTR12C 1709 + 0 1703 17191 24 0 13 9 9 5 160 5 3 60 15 9 181 0 5 4 1 0 54 0 1 155 5 4 36 0 159 230 1 0 4 4 2 90 51 2 14 11 4 108 25 19 12 0 1 67 24 24 144 33 22 78 chain 5048 chr17 83257441 + 40383002 40383066 MER5A1 166 + 63 127 85427 64 chain 24409 chr17 83257441 + 40383090 40383379 AluSg7 307 + 9 300 50156 41 0 1 80 0 1 168 chain 38537 chr17 83257441 + 40498996 40499458 LTR2 463 + 0 463 35681 362 12 13 88 chain 24308 chr17 83257441 + 40528718 40529065 L1PA8 5853 + 5506 5853 50319 58 1 0 45 2 0 70 1 0 4 15 14 47 1 0 11 7 6 74 0 7 11 chain 57368 chr17 83257441 + 40578448 40579101 L1PA5 6144 + 5488 6144 27136 508 0 1 74 0 2 71 chain 25279 chr17 83257441 + 40594471 40594894 MSTA 426 + 0 426 48817 54 4 5 44 0 1 5 40 47 24 5 4 21 3 1 23 9 7 5 1 0 185 chain 4722 chr17 83257441 + 40709670 40709757 MER21C 908 + 270 356 87122 26 17 16 44 chain 28956 chr17 83257441 + 40724449 40724807 THE1C 375 + 2 362 43397 201 0 3 144 1 0 12 chain 91356 chr17 83257441 + 40814093 40815191 L1PA6 6164 + 5056 6162 19441 54 1 0 4 0 1 203 0 4 33 0 2 636 14 20 143 4 0 6 chain 14732 chr17 83257441 + 40829300 40829520 L1MA3 4352 + 3236 3452 62627 98 1 0 4 0 1 44 2 0 13 8 7 29 5 1 10 0 3 6 chain 5116 chr17 83257441 + 40833613 40833710 L1MA4 2864 + 2598 2690 85070 56 20 17 12 2 0 7 chain 21769 chr17 83257441 + 40853803 40854061 L1PA7 6471 + 6211 6468 54143 129 1 0 128 chain 2832 chr17 83257441 + 40891704 40891748 MamRep4096 390 + 34 75 101395 4 1 0 30 2 0 7 chain 22613 chr17 83257441 + 40950671 40950972 AluSp 311 + 14 304 52965 111 24 13 166 chain 5741 chr17 83257441 + 40986173 40986236 L1PA2 6032 + 5927 5990 82171 63 chain 15299 chr17 83257441 + 41010154 41010362 MER30 238 + 0 238 61918 15 0 18 74 4 16 115 chain 16989 chr17 83257441 + 41057470 41057744 L1PA15 4387 + 4066 4327 59817 38 2 1 26 1 0 54 1 0 15 4 0 17 1 0 52 4 1 44 3 1 12 chain 33346 chr17 83257441 + 41087445 41087940 MER4A1 472 + 0 472 39223 257 14 18 7 5 0 114 31 9 67 chain 45008 chr17 83257441 + 41089427 41089971 L1PA8A 6298 + 5734 6278 31580 544 chain 144552 chr17 83257441 + 41091730 41093626 MER4-int 2692 + 4 1986 12725 7 1 0 21 6 4 63 2 0 6 2 0 8 1 3 9 3 0 306 0 2 7 14 12 206 0 1 24 0 75 23 1 14 767 5 4 4 0 1 91 4 0 3 0 9 312 chain 33421 chr17 83257441 + 41095313 41095763 MER4A1 472 + 0 470 39158 220 0 1 5 5 26 11 1 0 5 8 7 186 1 0 4 0 1 4 chain 31897 chr17 83257441 + 41107483 41107951 MER4A1 472 + 0 472 40417 132 0 3 90 1 22 21 36 14 114 7 9 67 chain 45466 chr17 83257441 + 41109431 41109975 L1PA8A 6298 + 5734 6278 31326 544 chain 190143 chr17 83257441 + 41112035 41115595 MER4-int 2692 + 4 2692 10106 7 1 0 21 6 4 14 16 17 31 3 1 6 2 0 9 0 2 542 0 1 24 0 75 20 0 18 124 4 5 273 0 3 245 0 1 5 9 9 16 1 2 83 1 0 8 0 1 411 966 0 37 23 20 103 7 6 115 3 1 8 0 1 410 0 3 6 chain 35106 chr17 83257441 + 41115605 41116054 MER4A1 472 + 2 472 37955 218 0 1 9 4 25 13 8 7 197 chain 16724 chr17 83257441 + 41120968 41121150 L1PA5 6144 + 5962 6144 60129 182 chain 19415 chr17 83257441 + 41125467 41125714 L1PA8 5853 + 5609 5853 57115 72 1 0 59 2 1 22 1 0 90 chain 105583 chr17 83257441 + 41128095 41129582 L1PB 1623 + 144 1585 17610 34 2 0 10 7 4 77 1 0 118 0 1 10 2 1 19 1 0 66 1 0 516 0 1 305 4 1 139 1 0 7 2 1 30 8 4 13 5 1 12 63 39 22 2 0 10 chain 5725 chr17 83257441 + 41135026 41135101 L1PA8 5853 + 5688 5762 82238 52 2 1 21 chain 43798 chr17 83257441 + 41153834 41154380 LTR19B 566 + 0 566 32258 299 1 3 10 1 17 116 0 1 67 0 1 52 chain 16207 chr17 83257441 + 41169184 41169482 THE1B 368 + 8 286 60735 45 41 17 99 1 0 27 0 3 7 4 8 10 7 6 12 2 1 43 chain 28593 chr17 83257441 + 41188612 41188909 AluYg6 310 + 0 297 43969 297 chain 48226 chr17 83257441 + 41191515 41192154 L1PA8 5853 + 5220 5853 30209 300 10 11 33 1 0 8 0 1 32 1 0 3 2 0 71 1 0 14 1 0 47 2 1 19 2 1 92 chain 64774 chr17 83257441 + 41193765 41194606 L1PA8 5853 + 5016 5853 25245 101 1 2 90 0 1 354 1 0 46 2 0 60 12 11 59 3 2 18 1 0 93 chain 35152 chr17 83257441 + 41198311 41198888 L1PB1 5432 + 4861 5422 37925 190 1 0 47 6 9 7 1 0 21 1 0 12 1 0 21 2 0 46 17 22 10 0 1 34 1 0 15 2 0 6 17 9 16 2 0 5 17 14 24 1 0 21 1 0 13 1 0 18 chain 24557 chr17 83257441 + 41219055 41219357 L1P2 5180 + 2544 2846 49930 302 chain 272237 chr17 83257441 + 41219646 41223359 L1PA7 6471 + 2854 6459 7653 159 24 28 23 0 40 51 382 0 52 0 1 341 3 7 280 2 0 1248 2 3 316 0 222 6 1 0 53 0 4 449 1 2 320 chain 524828 chr17 83257441 + 41239937 41246014 L1PA5 6144 + 0 6144 2059 206 6 27 74 0 1 39 6 7 114 3 7 77 0 1 53 0 1 174 0 1 246 1 2 36 0 1 1244 0 3 1078 0 25 92 2 0 369 0 1 8 0 1 88 0 1 132 0 2 2018 0 4 11 chain 193064 chr17 83257441 + 41259937 41262336 L1PA8 5853 + 3458 5853 9970 44 3 4 139 0 1 130 0 1 95 1 2 142 1 2 314 2 0 62 5 6 1164 1 0 46 2 0 69 1 0 16 2 0 45 2 1 16 5 4 92 chain 26362 chr17 83257441 + 41279011 41279502 L1MA1 4479 + 3721 4190 47174 18 2 0 15 2 1 71 1 0 8 17 15 10 1 0 88 1 0 5 3 0 103 0 1 4 0 5 13 1 0 30 15 10 18 24 20 16 8 1 17 chain 47774 chr17 83257441 + 41281202 41281761 L1PA6 6164 + 5600 6161 30370 188 0 1 349 0 1 22 chain 76043 chr17 83257441 + 41319635 41320678 L1PA16 3655 + 2197 3241 22554 203 0 3 154 10 12 101 27 26 201 2 1 15 5 4 284 1 0 40 chain 7742 chr17 83257441 + 41331026 41331132 MER2 342 + 186 293 75511 78 1 2 27 chain 11473 chr17 83257441 + 41374595 41374750 MLT2B1 522 + 0 158 67787 136 3 6 16 chain 9429 chr17 83257441 + 41383316 41383444 MER58A 224 + 54 181 71640 121 1 0 6 chain 18720 chr17 83257441 + 41460563 41460866 L1PA8 5853 + 5558 5853 57878 6 1 0 44 2 0 65 7 6 10 16 15 36 2 1 19 1 0 11 9 8 74 chain 11886 chr17 83257441 + 41467959 41468129 U2 167 + 0 164 67046 131 17 11 22 chain 95048 chr17 83257441 + 41469205 41470329 L1PA8 5853 + 4738 5853 18900 271 2 0 555 1 0 44 2 0 71 1 0 14 1 0 47 2 1 19 1 0 93 chain 37848 chr17 83257441 + 41607968 41608405 L1PA6 6164 + 5723 6162 36175 285 0 1 14 0 1 138 chain 91488 chr17 83257441 + 41685332 41686398 MER11C 1089 + 0 1073 19424 249 1 4 33 0 2 257 0 1 52 0 1 474 chain 7571 chr17 83257441 + 41718153 41718243 5S 121 + 0 90 75925 90 chain 3436 chr17 83257441 + 41747311 41747371 MLT2B1 522 + 4 73 95771 30 7 9 9 0 7 14 chain 21568 chr17 83257441 + 41756616 41756912 AluSc 308 + 0 290 54411 76 3 0 60 11 13 5 2 0 131 3 0 5 chain 134421 chr17 83257441 + 41875410 41876923 SVA_D 2077 + 0 2077 13606 13 5 6 39 1 3 609 0 71 20 3 0 152 0 488 224 0 1 350 0 4 97 chain 31036 chr17 83257441 + 41877577 41877997 MLT2A1 477 + 17 477 41098 119 14 15 18 1 5 209 5 41 34 1 0 19 chain 21996 chr17 83257441 + 41941489 41941783 AluY 311 + 8 299 53840 125 1 0 12 24 8 83 5 19 44 chain 25787 chr17 83257441 + 42034497 42034813 AluSp 311 + 0 311 48033 120 5 0 191 chain 19472 chr17 83257441 + 42056591 42056948 THE1B 368 + 0 368 57068 90 6 8 13 0 3 6 20 18 39 58 66 125 chain 24558 chr17 83257441 + 42211235 42211518 AluSp 311 + 11 294 49927 4 1 0 119 0 1 159 chain 3044 chr17 83257441 + 42225861 42225903 L1MC4 1079 + 725 767 99381 28 1 0 4 0 1 9 chain 28302 chr17 83257441 + 42242821 42243135 SVA_D 2077 + 1759 2071 44409 181 1 0 119 1 0 12 chain 4501 chr17 83257441 + 42376236 42376288 Charlie1a 1436 + 573 625 88321 52 chain 17504 chr17 83257441 + 42424403 42424621 AluSp 311 + 48 259 59240 6 6 0 180 1 0 25 chain 3391 chr17 83257441 + 42446884 42446943 L1MDa 1598 + 1253 1312 96159 15 5 6 5 1 0 33 chain 140941 chr17 83257441 + 42448453 42450045 SVA_D 2077 + 6 2077 13030 13 11 0 810 1 0 79 1 0 4 0 489 43 0 1 4 1 2 385 1 2 239 chain 13364 chr17 83257441 + 42475423 42475632 MER30 238 + 0 238 64520 22 4 14 4 1 0 67 4 20 18 12 16 77 chain 37486 chr17 83257441 + 42477952 42478369 L1PA5 6144 + 5725 6142 36408 417 chain 7926 chr17 83257441 + 42617188 42617295 MER2 342 + 132 237 75053 28 0 1 52 3 0 24 chain 3385 chr17 83257441 + 42644210 42644252 U6 107 + 11 56 96224 36 0 3 6 chain 4236 chr17 83257441 + 42813174 42813221 Tigger4b 360 + 142 189 89911 47 chain 24003 chr17 83257441 + 42821929 42822221 AluSc 308 + 5 290 50789 100 0 2 175 9 0 8 chain 153524 chr17 83257441 + 42972350 42974012 SVA_F 1814 + 0 1813 12144 701 0 40 139 1 0 18 0 64 125 0 49 34 1 0 643 chain 5121 chr17 83257441 + 43033948 43034002 SVA_E 1901 + 1837 1891 85055 54 chain 32186 chr17 83257441 + 43127446 43128516 LTR12C 1709 + 1033 1709 40201 45 560 193 112 35 34 46 23 0 15 1 0 63 1 0 71 14 13 84 chain 107374 chr17 83257441 + 43136176 43137441 L1PA5 6144 + 4874 6143 17398 325 0 1 271 0 4 432 0 4 224 5 0 8 chain 7363 chr17 83257441 + 43139081 43139181 MER21C 908 + 14 111 76499 92 3 0 5 chain 41448 chr17 83257441 + 43153215 43153691 LTR15 485 + 0 477 33708 344 0 1 132 chain 20986 chr17 83257441 + 43159626 43159857 SVA_D 2077 + 1846 2077 55142 231 chain 14683 chr17 83257441 + 43277175 43277407 L1PA8 5853 + 5567 5792 62692 41 2 0 43 1 0 33 1 0 8 1 0 48 2 1 16 9 8 27 chain 78050 chr17 83257441 + 43354953 43355913 LTR5_Hs 974 + 0 974 22089 115 5 13 160 0 1 530 8 15 31 8 6 103 chain 15966 chr17 83257441 + 43371975 43372203 LTR76 689 + 7 262 61071 7 0 8 23 5 4 80 8 28 105 chain 22627 chr17 83257441 + 43397042 43397310 AluSp 311 + 17 284 52946 9 1 0 258 chain 19366 chr17 83257441 + 43450868 43451091 SVA_E 1901 + 527 750 57165 223 chain 138350 chr17 83257441 + 43451487 43453206 SVA_D 2077 + 349 2077 13232 33 0 1 429 40 0 91 10 56 25 49 0 46 49 22 51 0 78 207 0 1 4 9 8 676 chain 3736 chr17 83257441 + 43452115 43452164 SVA_D 2077 + 1084 1211 40383 17 0 41 11 0 37 21 chain 3736 chr17 83257441 + 43452210 43452259 SVA_D 2077 + 1257 1306 40383 49 chain 24021 chr17 83257441 + 43500637 43500919 AluSc 308 + 6 289 50767 15 0 1 267 chain 46371 chr17 83257441 + 43604247 43604809 LTR19B 566 + 0 566 30894 135 0 2 34 0 1 41 2 1 82 1 2 215 0 1 52 chain 23680 chr17 83257441 + 43736815 43737094 AluSp 311 + 6 286 51306 172 0 1 107 chain 3480 chr17 83257441 + 43740759 43740800 MER57B1 401 + 294 335 95383 41 chain 5820 chr17 83257441 + 43813225 43813297 MIR 256 + 37 109 81821 72 chain 22096 chr17 83257441 + 43874359 43874674 LTR3B_ 500 + 0 326 53706 60 0 7 18 0 1 64 11 12 5 0 3 8 6 0 124 0 5 19 chain 43619 chr17 83257441 + 43973346 43974241 LTR66 600 + 0 600 32373 154 1 5 6 317 0 103 0 1 42 1 0 37 4 0 51 4 10 54 3 0 26 0 16 67 0 3 25 chain 4199 chr17 83257441 + 43990550 43990596 MADE1 96 + 50 96 90126 46 chain 21576 chr17 83257441 + 44017317 44017576 AluY 311 + 0 265 54397 50 0 7 76 1 0 132 chain 22166 chr17 83257441 + 44064857 44065155 AluSc8 310 + 6 300 53616 126 0 3 128 12 11 16 6 0 10 chain 105059 chr17 83257441 + 44180045 44181576 SVA_F 1814 + 335 1544 17677 366 0 40 139 2 0 20 275 0 48 0 15 32 1 0 126 0 1 80 100 0 342 chain 4417 chr17 83257441 + 44180572 44180632 SVA_F 1814 + 964 1024 58691 14 17 18 15 1 0 13 chain 11793 chr17 83257441 + 44180637 44180797 SVA_F 1814 + 916 1091 43068 32 15 30 113 chain 6737 chr17 83257441 + 44181134 44181218 SVA_F 1814 + 913 1011 68204 23 0 1 10 0 15 39 2 0 10 chain 24418 chr17 83257441 + 44186037 44186335 AluSp 311 + 0 295 50139 53 2 0 71 0 1 84 2 1 65 1 0 20 chain 4461 chr17 83257441 + 44208827 44208881 MIRb 242 + 62 118 88548 5 0 2 49 chain 169125 chr17 83257441 + 44237440 44239560 SVA_D 2077 + 58 2056 11149 318 0 4 162 0 40 335 0 37 38 125 0 44 0 2 275 52 0 75 0 1 4 9 8 43 48 0 477 0 20 115 chain 10654 chr17 83257441 + 44238293 44238418 SVA_D 2077 + 1220 1346 40244 40 0 1 85 chain 4456 chr17 83257441 + 44238737 44238789 SVA_D 2077 + 1186 1235 66843 34 2 0 10 1 0 5 chain 3858 chr17 83257441 + 44238920 44238968 SVA_D 2077 + 1043 1091 67759 48 chain 7445 chr17 83257441 + 44242687 44242807 MSTC 436 + 82 202 76256 60 8 0 15 8 16 29 chain 4831 chr17 83257441 + 44307114 44307172 U6 107 + 26 84 86532 58 chain 75332 chr17 83257441 + 44340425 44341299 MER11D 897 + 0 897 22762 593 1 24 280 chain 9716 chr17 83257441 + 44341495 44341668 L1MB8 1703 + 1129 1306 71015 76 37 39 41 0 2 19 chain 3592 chr17 83257441 + 44356993 44357045 MER3 215 + 91 136 94498 36 7 0 9 chain 131210 chr17 83257441 + 44368640 44370209 LTR12C 1709 + 0 1709 13898 376 3 23 251 0 119 66 1 2 275 1 0 5 3 1 106 0 4 394 4 3 84 chain 9949 chr17 83257441 + 44482132 44482291 L1PA8 5853 + 5604 5760 70528 67 9 8 11 1 0 47 8 7 16 chain 4194 chr17 83257441 + 44511353 44511425 LTR9B 643 + 561 631 90173 27 17 15 28 chain 157324 chr17 83257441 + 44523983 44525754 SVA_D 2077 + 0 2072 11924 19 5 0 16 3 1 627 0 77 21 3 0 126 0 183 282 0 49 223 0 2 446 chain 121259 chr17 83257441 + 44527782 44529218 LTR12C 1709 + 0 1709 15305 300 10 1 186 0 1 162 0 278 184 1 0 6 1 0 106 0 4 251 0 1 229 chain 4077 chr17 83257441 + 44535182 44535228 U5 65 + 4 50 90901 46 chain 90642 chr17 83257441 + 44568043 44569479 LTR12C 1709 + 0 1709 19564 29 5 14 231 21 22 42 7 50 75 0 1 5 13 0 32 10 11 142 0 278 139 0 47 89 24 0 14 14 7 54 32 4 25 106 72 242 1 0 84 chain 5658 chr17 83257441 + 44599021 44599102 MER96B 391 - 85 170 82520 12 1 0 26 0 1 27 0 4 15 chain 4298 chr17 83257441 + 44646459 44646507 MADE1 96 + 0 48 89510 48 chain 3831 chr17 83257441 + 44680914 44681047 MER5A 189 + 0 157 92631 21 75 99 37 chain 3054 chr17 83257441 + 44794041 44794092 Tigger3c 601 + 437 493 99266 28 8 13 15 chain 9700 chr17 83257441 + 44812372 44812502 MER85 139 + 0 139 71046 93 2 11 35 chain 8822 chr17 83257441 + 44833590 44833702 MER39 703 + 581 693 72944 112 chain 24913 chr17 83257441 + 45046344 45046638 AluSx4 309 + 13 303 49408 9 4 0 281 chain 8130 chr17 83257441 + 45062574 45062771 Tigger3a 397 + 144 326 74568 45 14 21 5 2 0 11 54 34 66 chain 4144 chr17 83257441 + 45062654 45062699 Tigger3a 397 - 139 184 90498 45 chain 8623 chr17 83257441 + 45071441 45071542 HY3 101 + 0 101 73401 101 chain 22979 chr17 83257441 + 45101350 45101639 AluSc 308 + 8 301 52393 81 0 1 56 2 5 150 chain 116022 chr17 83257441 + 45347918 45349567 L1PB2 3958 + 2200 3838 16231 21 12 16 242 1 3 6 17 0 292 1 5 106 0 1 29 0 3 378 0 1 4 2 0 51 0 3 12 7 0 66 2 0 12 4 0 19 0 8 25 66 65 110 2 1 69 9 7 20 1 0 63 chain 10710 chr17 83257441 + 45393857 45394014 MER115 684 + 502 662 69031 82 0 1 44 11 12 14 0 1 6 chain 9421 chr17 83257441 + 45424597 45424797 L1PB1 5432 + 5238 5412 71652 41 2 1 16 8 0 15 9 0 15 25 20 24 1 0 22 1 0 12 1 0 8 chain 6122 chr17 83257441 + 45568471 45568605 MER58B 340 + 174 330 80648 19 6 11 30 3 2 16 23 41 37 chain 49656 chr17 83257441 + 45576624 45577208 LTR10C 591 + 0 591 29699 31 0 1 10 0 4 462 0 2 81 chain 2934 chr17 83257441 + 45577618 45577654 L1MB7 1623 + 1393 1428 100547 30 1 0 5 chain 9477 chr17 83257441 + 45581170 45581279 L1PA8A 6298 + 6178 6287 71539 109 chain 22099 chr17 83257441 + 45603533 45603802 AluSg7 307 + 29 299 53698 102 1 2 166 chain 26427 chr17 83257441 + 45631664 45631971 AluY 311 + 3 311 47089 129 0 1 178 chain 3296 chr17 83257441 + 45773324 45773435 LTR12F 595 + 215 282 97055 25 43 0 11 9 9 6 1 0 16 chain 9044 chr17 83257441 + 45838514 45838615 MER9a2 513 + 363 464 72463 101 chain 2947 chr17 83257441 + 45952018 45952049 U2 167 + 0 31 100412 31 chain 23145 chr17 83257441 + 46006140 46006429 L1MA3 4352 + 3781 4081 52153 194 0 2 54 0 9 41 chain 3203 chr17 83257441 + 46229301 46229337 tRNA-Tyr-TAC 38 + 1 37 97873 36 chain 33152 chr17 83257441 + 46250324 46250752 MLT2A1 477 + 0 476 39404 169 4 1 9 0 1 20 0 6 178 12 56 36 chain 3752 chr17 83257441 + 46255978 46256044 MLT1A0 366 + 25 92 93227 21 12 13 33 chain 11590 chr17 83257441 + 46258508 46258707 L1PB1 5432 + 4996 5185 67589 107 1 2 10 3 0 19 1 0 13 1 0 9 2 0 3 2 0 7 3 1 18 chain 22692 chr17 83257441 + 46347720 46348008 AluSc 308 + 7 297 52835 71 2 1 62 1 4 152 chain 30443 chr17 83257441 + 46488006 46488418 MER1A 529 + 0 429 41637 16 9 21 43 8 12 6 0 1 330 chain 22692 chr17 83257441 + 46565655 46565943 AluSc 308 + 7 297 52834 71 2 1 62 1 4 152 chain 10900 chr17 83257441 + 46600775 46600913 Tigger3a 397 + 217 385 68698 52 0 30 86 chain 30443 chr17 83257441 + 46705720 46706132 MER1A 529 + 0 429 41636 16 9 21 43 8 12 6 0 1 330 chain 17401 chr17 83257441 + 46760697 46761017 Tigger4b 360 + 3 338 59354 59 15 16 30 42 37 26 5 6 42 0 2 72 1 17 28 chain 23310 chr17 83257441 + 46780514 46780785 AluYc3 301 + 8 280 51918 105 1 2 165 chain 27424 chr17 83257441 + 46804698 46805128 LTR12F 595 + 11 595 45672 80 5 18 5 1 0 32 6 94 46 0 64 34 9 1 7 11 0 100 0 9 94 chain 3987 chr17 83257441 + 46898880 46899092 L1MB7 1623 + 1307 1491 91533 16 1 0 4 61 57 28 62 40 23 4 3 13 chain 110850 chr17 83257441 + 46921249 46922493 L1PA5 6144 + 4900 6144 16960 1244 chain 10953 chr17 83257441 + 47071023 47071178 MER4D 903 + 311 469 68614 61 15 18 79 chain 26997 chr17 83257441 + 47147119 47147400 AluYg6 310 + 1 282 46278 281 chain 2707 chr17 83257441 + 47148539 47148579 L1MEc 1507 + 1011 1050 102306 14 2 1 24 chain 76826 chr17 83257441 + 47362065 47363071 LTR13 1007 + 0 1007 22370 72 11 9 300 4 5 109 16 4 152 0 11 24 13 16 113 3 4 156 2 1 31 chain 159084 chr17 83257441 + 47397008 47398853 SVA_D 2077 + 15 2064 11801 23 15 31 736 39 0 111 5 42 76 1 2 7 0 1 4 0 1 52 0 78 51 0 1 72 0 98 328 0 10 325 chain 1308 chr17 83257441 + 47397782 47397818 SVA_D 2077 + 806 842 84688 36 chain 37178 chr17 83257441 + 47414987 47415397 L1PA3long 6157 + 5747 6157 36628 410 chain 154194 chr17 83257441 + 47419915 47421632 SVA_D 2077 + 0 2067 12100 24 0 2 241 0 1 648 5 269 156 7 72 5 0 1 310 0 10 52 1 8 268 chain 8528 chr17 83257441 + 47449316 47449516 L1PB1 5432 + 5245 5422 73627 36 3 0 15 1 0 4 46 32 14 2 0 24 2 1 20 1 0 13 1 0 18 chain 29469 chr17 83257441 + 47467927 47468298 THE1C 375 + 0 375 42643 186 0 1 14 0 3 171 chain 3883 chr17 83257441 + 47489051 47489098 MER66B 489 + 291 337 92271 22 1 0 24 chain 23628 chr17 83257441 + 47489592 47489893 AluSp 311 + 0 296 51384 37 1 0 20 0 4 33 8 0 202 chain 6448 chr17 83257441 + 47528935 47529051 MER33 330 + 143 268 79520 67 14 26 5 1 0 14 3 1 12 chain 7960 chr17 83257441 + 47557412 47557512 HY3 101 + 0 100 74976 100 chain 6424 chr17 83257441 + 47561565 47561639 MER21A 919 + 60 134 79592 74 chain 23147 chr17 83257441 + 47797502 47797841 THE1B 368 + 0 368 52147 44 0 15 113 1 0 26 13 16 10 8 16 47 1 5 76 chain 32113 chr17 83257441 + 48102998 48103578 LTR12F 595 + 0 595 40263 97 13 48 32 6 47 16 18 0 43 20 6 98 54 35 20 10 0 153 chain 5606 chr17 83257441 + 48245614 48245683 MIR 256 + 67 136 82781 69 chain 21524 chr17 83257441 + 48342742 48343009 AluY 311 + 39 300 54474 93 0 1 157 7 0 10 chain 15096 chr17 83257441 + 48365838 48366036 MER107 203 + 0 203 62161 55 0 1 98 1 0 5 4 9 35 chain 56543 chr17 83257441 + 48449103 48449852 L1PA8 5853 + 5103 5853 27413 88 0 1 12 10 1 320 0 1 38 1 0 44 2 0 65 17 15 47 7 6 11 1 15 86 chain 9139 chr17 83257441 + 48479096 48479196 HY3 101 + 0 100 72259 100 chain 21010 chr17 83257441 + 48560937 48561183 AluSp 311 + 38 285 55104 19 0 1 227 chain 3948 chr17 83257441 + 48674213 48674261 L1MB7 1623 + 1078 1127 91771 27 0 1 21 chain 16081 chr17 83257441 + 48700223 48700437 L1PA7 6471 + 6251 6468 60915 14 10 12 10 0 1 180 chain 4253 chr17 83257441 + 48796772 48796896 MIRb 242 + 18 142 89803 24 27 25 22 26 28 25 chain 4391 chr17 83257441 + 48822721 48822815 MER31B 477 + 12 118 88938 42 0 13 11 27 26 14 chain 20542 chr17 83257441 + 48838454 48838719 AluY 311 + 22 288 55726 110 3 4 152 chain 29322 chr17 83257441 + 48898785 48899096 AluYa5 310 + 0 310 42845 123 1 0 187 chain 10689 chr17 83257441 + 48978282 48978431 MER41B 635 + 486 635 69064 92 7 8 29 1 0 20 chain 42745 chr17 83257441 + 48978523 48979748 MER41-int 2638 + 1371 1946 32921 174 0 2 95 331 0 30 1 0 24 0 2 114 2 0 64 2 0 26 326 8 36 chain 8141 chr17 83257441 + 49036351 49036449 U6 107 + 0 101 74542 44 0 3 54 chain 5351 chr17 83257441 + 49076495 49076560 MER41B 635 + 481 547 83951 27 0 1 38 chain 80400 chr17 83257441 + 49125566 49126514 SVA_D 2077 + 457 2077 21547 40 0 193 61 0 117 53 0 37 5 0 227 113 0 98 676 chain 76483 chr17 83257441 + 49150062 49150927 SVA_D 2077 + 1207 2067 22442 6 2 0 175 0 1 4 9 8 44 1 0 10 2 0 612 chain 21640 chr17 83257441 + 49182325 49182980 THE1B 368 + 0 368 54301 41 0 16 73 0 1 40 324 0 27 30 42 66 5 13 49 chain 81578 chr17 83257441 + 49185139 49186176 THE1B-int 1605 + 519 1592 21317 62 0 1 539 0 19 62 3 4 151 6 5 49 0 16 165 chain 19139 chr17 83257441 + 49186189 49186503 THE1B 368 + 1 348 57410 43 5 20 108 1 0 6 0 1 19 8 6 10 17 29 63 5 13 29 chain 5440 chr17 83257441 + 49192527 49192597 tRNA-Gln-CAA 69 + 0 69 83508 55 2 1 13 chain 11490 chr17 83257441 + 49286914 49287039 AluSp 311 + 171 296 67762 125 chain 36634 chr17 83257441 + 49560070 49563765 Tigger1 2417 + 50 2089 36993 137 2 0 7 1922 1306 48 1070 39 58 30 27 8 0 2 50 0 6 48 9 10 198 74 61 34 chain 4829 chr17 83257441 + 49671292 49671362 MADE1 96 - 2 94 86544 38 4 26 28 chain 25284 chr17 83257441 + 49678809 49679094 AluYc 301 + 8 299 48805 112 0 2 132 0 4 41 chain 4314 chr17 83257441 + 49875092 49875155 MIR 256 + 70 134 89406 46 4 5 13 chain 3602 chr17 83257441 + 49984952 49984993 MIR3 191 + 70 111 94407 41 chain 12120 chr17 83257441 + 50228376 50228523 MLT2A2 560 + 413 560 66633 147 chain 9396 chr17 83257441 + 50323859 50323965 MER30 238 + 129 235 71711 106 chain 5765 chr17 83257441 + 50340690 50340775 LTR54B 464 + 13 96 82064 57 7 5 21 chain 9555 chr17 83257441 + 50392952 50393100 MER30 238 + 47 230 71364 61 2 0 5 1 25 8 0 16 28 3 0 40 chain 5979 chr17 83257441 + 50420586 50420681 MLT1D 503 + 401 497 81164 59 9 10 27 chain 3457 chr17 83257441 + 50500980 50501023 MER53 195 - 14 58 95570 8 0 1 35 chain 24223 chr17 83257441 + 50734958 50735256 AluSp 311 + 6 308 50454 8 0 4 290 chain 23897 chr17 83257441 + 50797756 50798026 L1PA5 6144 + 5872 6144 50946 258 1 3 11 chain 25312 chr17 83257441 + 50869425 50869718 AluSp 311 + 4 297 48763 293 chain 5331 chr17 83257441 + 50901832 50901990 MER3 215 - 6 168 84046 33 82 86 43 chain 4336 chr17 83257441 + 50927545 50927711 MIR 256 + 70 235 89255 39 102 101 25 chain 26499 chr17 83257441 + 50994071 50994426 THE1A 353 + 0 353 46980 110 1 0 155 10 11 25 2 0 52 chain 3107 chr17 83257441 + 51098125 51098159 MER21B 843 + 765 799 98722 34 chain 12716 chr17 83257441 + 51293419 51293617 MER30 238 + 0 238 65591 21 1 19 8 0 1 44 9 7 14 1 24 100 chain 32645 chr17 83257441 + 51302072 51302524 MER4A1 472 + 2 472 39811 245 7 28 17 1 0 74 16 14 92 chain 515848 chr17 83257441 + 51304948 51311073 L1PA6 6164 + 0 6160 2477 250 1 0 160 0 1 5 1 0 1542 1 0 374 1 2 574 0 1 189 3 0 228 57 4 301 8 73 658 0 4 45 0 2 285 0 1 346 1 0 161 1 0 36 4 5 71 0 4 141 0 11 528 2 10 137 3 0 11 chain 195052 chr17 83257441 + 51314319 51317909 MER4-int 2692 + 1 2692 9889 10 1 0 25 2 0 63 1 0 19 602 5 104 328 8 16 0 3 5 8 5 343 1 5 25 0 5 46 12 17 300 0 6 47 0 1 68 0 5 102 4 0 83 3 4 95 0 1 47 9 11 16 0 6 10 6 1 254 2 0 102 0 1 80 0 1 55 1 0 274 3 0 5 2 0 7 10 2 100 0 1 31 1 7 156 0 1 100 0 1 6 chain 32768 chr17 83257441 + 51317917 51318674 MER4A1 472 + 0 458 39697 247 7 28 10 5 3 133 318 0 37 chain 339051 chr17 83257441 + 51327012 51330920 L1P2 5180 + 584 4469 6088 203 0 15 182 49 0 462 1 0 11 0 4 1061 1 0 1873 0 9 65 chain 28961 chr17 83257441 + 51330921 51331246 SVA_B 1603 + 1278 1603 43391 325 chain 47412 chr17 83257441 + 51430049 51430609 LTR19B 566 + 0 564 30503 264 1 0 37 0 1 4 0 1 30 0 2 114 0 1 110 chain 519095 chr17 83257441 + 51446677 51453159 L1PA7 6471 + 3 6470 2311 408 2 3 264 39 39 34 16 1 395 0 4 892 5 1 431 8 7 83 0 2 68 37 3 62 1 2 131 0 2 54 0 4 45 0 18 140 0 4 121 0 5 263 8 9 25 0 1 9 0 1 10 0 4 37 0 2 344 8 9 63 17 0 327 1 0 110 1 0 198 0 1 10 0 1 12 1 9 5 2 0 438 0 2 161 1 0 30 0 5 306 1 5 583 15 3 242 0 1 18 chain 6689 chr17 83257441 + 51490780 51490931 MLT1A0 366 + 8 159 78677 20 1 0 11 56 57 63 chain 23128 chr17 83257441 + 51539053 51539371 THE1B 368 + 7 368 52175 162 1 0 21 16 59 61 1 2 56 chain 54919 chr17 83257441 + 51569983 51570604 L1PA4 6152 + 3748 4373 27901 606 0 4 15 chain 515507 chr17 83257441 + 51574411 51580797 L1PA7 6471 + 3 6454 2494 63 1 2 22 2 1 530 0 1 588 0 4 26 1 5 17 0 3 515 0 1 714 1 5 141 16 6 239 0 4 82 1 2 126 0 4 135 0 4 173 0 10 123 0 4 58 0 1 149 2 5 238 1 0 313 0 3 157 7 11 178 0 12 43 0 2 85 6 8 652 1 0 21 0 1 132 0 6 72 0 2 10 0 3 60 0 1 213 0 1 146 0 3 168 17 16 31 11 0 45 0 1 54 chain 3526 chr17 83257441 + 51581160 51581199 MER50 708 + 562 601 95050 39 chain 292317 chr17 83257441 + 51623818 51627038 L1PA3long 6157 + 2924 6157 7060 715 0 5 1151 0 5 504 1 0 6 7 11 836 chain 22164 chr17 83257441 + 51659006 51659511 MLT2B2 565 + 0 562 53619 141 113 124 27 7 0 21 54 107 55 0 2 48 10 8 29 chain 4568 chr17 83257441 + 51669338 51669389 LTR12E 1234 + 653 704 87981 51 chain 7452 chr17 83257441 + 51669763 51669853 LTR12D 1347 + 1257 1347 76238 90 chain 27964 chr17 83257441 + 51715043 51715367 L1PA4 6152 + 5817 6151 44927 16 0 1 272 0 9 36 chain 13171 chr17 83257441 + 51717019 51717328 MER21C 908 + 2 234 64826 22 23 22 46 16 15 12 74 0 18 5 4 93 chain 14076 chr17 83257441 + 51717876 51718205 L1PB1 5432 + 5117 5420 63489 7 1 0 14 1 0 9 17 15 5 2 0 45 4 7 13 6 5 44 1 0 15 1 0 4 47 32 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 4430 chr17 83257441 + 51721894 51721965 MER21C 908 + 558 636 88734 18 10 17 43 chain 23397 chr17 83257441 + 51853641 51853980 THE1D 372 + 0 360 51764 62 3 13 47 6 10 56 7 9 27 4 10 102 2 1 23 chain 3074 chr17 83257441 + 51872729 51872766 MER63A 208 + 85 122 99048 37 chain 16556 chr17 83257441 + 51955747 51955987 L1PA8 5853 + 5611 5847 60303 71 8 6 52 2 1 19 12 11 76 chain 238255 chr17 83257441 + 51984218 51987518 L1PB1 5432 + 2168 5424 8512 39 1 9 236 0 1 41 6 0 252 2 1 4 0 1 87 14 16 12 10 1 7 0 2 431 0 5 54 1 2 4 1 0 109 0 1 116 0 4 11 0 1 104 0 2 140 0 4 156 1 0 22 5 1 161 7 9 236 7 0 70 0 4 104 3 0 77 0 2 192 0 2 202 11 6 5 1 0 13 18 1 6 1 0 13 1 0 11 5 1 8 2 0 53 2 1 15 1 0 41 5 4 15 1 0 6 16 6 19 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 88313 chr17 83257441 + 52053691 52054774 MER11B 1079 + 0 1079 19983 225 0 5 13 19 16 513 8 2 228 0 1 61 5 4 11 chain 14881 chr17 83257441 + 52066169 52066369 THE1B-int 1605 + 20 227 62409 28 0 1 79 0 9 61 9 6 23 chain 24473 chr17 83257441 + 52093970 52094298 L1PA7 6471 + 6136 6467 50074 161 10 13 6 1 0 62 1 4 77 2 0 8 chain 31724 chr17 83257441 + 52131787 52132183 L1PA3long 6157 + 5774 6157 40557 322 25 12 49 chain 108077 chr17 83257441 + 52185537 52186711 L1PA2 6032 + 4858 6032 17314 1174 chain 37551 chr17 83257441 + 52255036 52255494 LTR2 463 + 0 463 36371 61 0 3 63 0 3 64 0 1 117 1 0 10 1 0 141 chain 27234 chr17 83257441 + 52284922 52285230 L1PA7 6471 + 6147 6459 45918 168 1 0 123 0 5 16 chain 62701 chr17 83257441 + 52290189 52290933 L1PA7 6471 + 5722 6465 25710 41 0 1 695 2 0 6 chain 42852 chr17 83257441 + 52306026 52306572 MLT2A2 560 + 0 560 32864 194 1 4 183 0 2 23 0 11 88 3 1 54 chain 57738 chr17 83257441 + 52326901 52327742 L1PB 1623 + 98 933 27037 4 1 0 10 1 0 5 1 0 70 14 12 70 4 3 126 2 1 19 28 26 41 2 1 40 2 0 64 0 3 265 0 2 8 9 10 55 chain 32433 chr17 83257441 + 52334305 52334656 L1PA5 6144 + 4116 4467 40010 351 chain 11980 chr17 83257441 + 52376255 52376578 MER61C 433 + 28 423 66872 12 3 0 20 60 149 58 86 72 84 chain 89795 chr17 83257441 + 52414041 52415035 L1PA3long 6157 + 5153 6153 19720 157 0 4 701 0 2 136 chain 43148 chr17 83257441 + 52417512 52417979 L1PA3long 6157 + 5537 6004 32685 467 chain 13883 chr17 83257441 + 52417980 52418133 L1PA3long 6157 + 6004 6157 63758 153 chain 58631 chr17 83257441 + 52422028 52422699 L1PA5 6144 + 5456 6128 26779 572 0 1 99 chain 111807 chr17 83257441 + 52424740 52426175 L1PA7 6471 + 5036 6470 16834 384 0 1 60 0 1 66 5 4 41 9 1 27 3 4 93 0 3 68 0 1 220 0 2 295 2 1 5 0 1 104 0 9 8 13 4 27 1 0 4 chain 229719 chr17 83257441 + 52458100 52460742 L1PA6 6164 + 3504 6162 8755 19 1 0 393 0 1 324 2 1 120 0 4 928 1 5 16 1 0 108 0 3 130 0 6 5 1 2 593 chain 26742 chr17 83257441 + 52464551 52464907 THE1A 353 + 0 353 46626 110 1 0 9 17 16 124 1 0 94 chain 118740 chr17 83257441 + 52464922 52466487 THE1A-int 1579 + 17 1579 15766 96 0 3 81 4 7 290 10 3 404 4 0 158 1 0 4 8 9 202 10 11 188 1 2 104 chain 26305 chr17 83257441 + 52466489 52466832 THE1A 353 + 2 342 47262 79 4 2 5 0 1 21 1 0 149 1 0 83 chain 23169 chr17 83257441 + 52526439 52526787 THE1C 375 + 0 356 52121 6 0 1 70 5 6 59 6 10 34 1 0 5 5 5 106 0 4 44 1 0 6 chain 4875 chr17 83257441 + 52536960 52537072 MER45B 1037 + 827 942 86291 38 0 5 13 20 18 12 7 7 22 chain 447467 chr17 83257441 + 52573726 52579407 HERV9-int 5642 + 13 5642 4422 387 22 19 5 0 3 174 0 2 94 20 0 19 3 0 132 2 0 11 4 0 266 11 9 11 6 0 114 5 0 7 0 5 911 0 2 168 19 1 10 0 1 426 0 1 39 0 1 738 2 20 84 0 3 179 1 6 149 3 5 512 0 2 175 9 8 158 6 7 264 8 8 81 1 0 72 0 1 152 10 8 13 0 1 22 4 2 24 1 0 60 1 0 13 28 5 19 10 4 16 chain 140874 chr17 83257441 + 52615849 52617418 L1PA3long 6157 + 4581 6147 13034 725 0 1 61 4 0 779 chain 37009 chr17 83257441 + 52617563 52618045 LTR12F 595 + 0 582 36728 91 25 124 149 0 1 217 chain 211951 chr17 83257441 + 52656222 52658548 L1PA3long 6157 + 2773 5104 9287 1173 0 1 410 0 4 743 chain 4820 chr17 83257441 + 52699604 52699764 MER74B 573 + 69 231 86602 26 46 47 21 33 34 34 chain 16449 chr17 83257441 + 52734895 52735135 L1PA8 5853 + 5608 5844 60449 71 2 1 14 8 7 39 2 1 19 2 1 83 chain 30489 chr17 83257441 + 52750004 52750457 MLT2A1 477 + 0 477 41586 87 1 2 57 4 5 18 4 1 213 26 51 43 chain 5432 chr17 83257441 + 52771036 52771201 L1PA14 3548 + 3265 3424 83548 40 0 1 16 75 70 4 1 0 21 1 0 7 chain 4408 chr17 83257441 + 52792144 52792207 MER6A 605 + 336 392 88855 43 7 0 13 chain 14952 chr17 83257441 + 52836112 52836334 L1MA3 4352 + 4113 4327 62320 55 0 1 66 4 0 24 2 0 23 1 0 6 1 0 28 1 0 11 chain 41046 chr17 83257441 + 52861817 52862431 LTR12_ 688 + 0 688 33937 25 1 0 147 24 0 76 49 48 87 0 103 55 4 0 102 4 5 40 chain 10528 chr17 83257441 + 52891141 52891286 L1PA8 5853 + 5710 5853 69366 30 2 1 19 1 0 93 chain 27678 chr17 83257441 + 52902572 52902984 MLT2A1 477 + 2 401 45356 168 12 10 7 0 1 16 0 1 76 12 0 25 0 2 5 10 8 72 1 0 8 chain 15606 chr17 83257441 + 52917669 52917911 THE1B 368 + 120 368 61524 55 1 0 25 2 0 48 5 6 48 18 26 40 chain 19314 chr17 83257441 + 52929051 52929342 MER4A1 472 + 0 337 57225 33 0 1 12 3 4 23 1 0 132 35 80 52 chain 35363 chr17 83257441 + 52961655 52962069 LTR14C 587 + 170 585 37791 174 0 1 240 chain 29196 chr17 83257441 + 53062126 53062492 THE1C-int 1605 + 0 420 43052 16 1 2 92 0 54 161 1 0 95 chain 38208 chr17 83257441 + 53150810 53151272 LTR2 463 + 0 463 35902 367 0 1 95 chain 14959 chr17 83257441 + 53204613 53204806 MLT2A2 560 + 0 192 62312 180 1 0 12 chain 49097 chr17 83257441 + 53206868 53208762 L1PB1 5432 + 3582 5416 29906 7 4 0 141 13 0 7 1 0 71 0 3 282 1025 1012 9 1 0 20 1 0 13 1 0 11 4 0 11 5 4 47 2 1 14 2 1 38 8 7 15 3 0 6 74 59 9 1 0 20 2 1 13 0 2 5 3 0 5 chain 132821 chr17 83257441 + 53241750 53243197 L1PA3long 6157 + 4706 6157 13751 604 0 4 843 chain 91903 chr17 83257441 + 53309005 53310130 L1PA6 6164 + 5035 6161 19358 298 1 2 63 0 1 81 1 2 120 0 1 248 1 0 305 2 0 5 chain 46392 chr17 83257441 + 53310680 53311277 L1PA8 5853 + 5267 5853 30889 148 4 0 149 2 1 43 2 0 71 1 0 11 1 0 50 2 1 19 2 1 92 chain 135158 chr17 83257441 + 53339893 53341585 L1P2 5180 + 2 1692 13529 147 1 0 51 1 0 47 3 2 83 5 11 6 6 0 166 1 0 192 0 3 59 1 2 16 1 0 6 1 0 899 chain 191256 chr17 83257441 + 53345529 53347669 L1PA5 6144 + 3994 6139 10055 23 0 1 103 2 0 219 0 4 949 0 1 597 0 1 247 chain 138824 chr17 83257441 + 53355881 53357406 L1PA3long 6157 + 4632 6157 13204 1525 chain 51455 chr17 83257441 + 53365987 53366727 MER4E 760 + 0 753 29066 17 1 2 145 4 0 100 0 1 4 1 0 12 2 1 65 22 20 165 3 2 69 13 34 88 1 0 28 chain 88529 chr17 83257441 + 53412156 53413186 L1PA6 6164 + 5123 6156 19939 880 2 10 9 5 0 134 chain 65648 chr17 83257441 + 53453987 53454874 L1PB1 5432 + 3874 4842 25045 174 11 81 180 0 1 117 1 2 139 9 21 37 3 0 6 0 1 4 1 0 205 chain 5491 chr17 83257441 + 53537520 53537599 MADE1 96 + 0 96 83275 30 2 19 47 chain 3504 chr17 83257441 + 53565890 53566079 L1MA4A 3247 + 3022 3207 95214 15 1 2 20 103 101 12 10 7 28 chain 37777 chr17 83257441 + 53608085 53608631 LTR7B 505 + 0 495 36222 51 6 5 138 70 0 33 0 22 6 3 2 72 1 0 166 chain 3745 chr17 83257441 + 53609459 53609504 MER4D0 881 + 283 328 93293 45 chain 26487 chr17 83257441 + 53668430 53668763 THE1C 375 + 0 334 46996 173 5 6 155 chain 73702 chr17 83257441 + 53748064 53748937 MER11D 897 + 0 897 23169 592 2 25 85 0 1 194 chain 211638 chr17 83257441 + 53759940 53762293 L1PA3long 6157 + 3803 6157 9297 1503 0 1 850 chain 115855 chr17 83257441 + 53774481 53775890 L1PA5 6144 + 4754 6131 16268 67 47 14 218 4 0 79 0 2 160 1 0 10 0 1 43 0 2 461 0 1 176 1 0 6 7 8 129 chain 129282 chr17 83257441 + 53782352 53783857 L1PA5 6144 + 4639 6141 14112 624 9 9 540 0 1 119 0 1 202 5 0 6 chain 74508 chr17 83257441 + 53783862 53784915 L1PA8 5853 + 4775 5853 22958 26 0 2 207 2 0 84 2 0 135 0 1 224 14 22 45 13 16 27 21 20 21 6 4 81 1 0 11 0 1 5 1 0 33 5 23 83 0 1 6 chain 142529 chr17 83257441 + 53811054 53812618 L1PA3long 6157 + 2744 4308 12886 1564 chain 419279 chr17 83257441 + 53853025 53858380 L1PA8A 6298 + 451 5830 4887 6 0 1 635 0 4 30 24 0 15 1 0 49 0 1 30 4 2 974 1 0 190 0 4 41 21 23 45 0 1 74 0 4 31 0 1 340 4 1 12 0 4 397 1 0 142 0 1 252 10 17 89 10 7 139 1 0 123 0 1 373 16 2 25 2 0 285 1 0 4 24 27 437 2 1 82 1 4 111 0 3 80 0 1 28 0 37 193 chain 51009 chr17 83257441 + 53877781 53878373 L1PA5 6144 + 5553 6141 29210 443 0 1 138 5 0 6 chain 227844 chr17 83257441 + 53902553 53905410 L1PA7 6471 + 3564 6459 8815 41 0 1 4 3 5 616 7 1 346 2 1 92 0 4 251 1 35 313 7 0 295 5 0 52 2 0 692 2 0 6 4 6 99 0 18 17 chain 370884 chr17 83257441 + 53914726 53918904 L1PA4 6152 + 1989 6151 5632 384 5 0 798 1 0 141 9 3 367 1 0 430 5 0 1187 0 2 625 0 7 78 7 0 140 chain 15626 chr17 83257441 + 53930783 53930973 L1PA6 6164 + 5966 6162 61500 108 1 7 81 chain 3474 chr17 83257441 + 53958511 53958631 L1MA4A 3247 + 2146 2244 95435 25 22 15 7 7 0 15 24 16 20 chain 495461 chr17 83257441 + 54085649 54091752 L1PA6 6164 + 0 6162 3284 405 0 1 43 8 0 120 1 0 230 1 18 376 13 26 500 0 1 140 0 1 107 13 17 228 0 2 117 0 2 555 0 1 284 4 0 153 0 9 193 0 1 177 2 0 945 0 5 746 0 1 75 1 2 116 0 15 550 chain 79287 chr17 83257441 + 54126438 54127539 MER11A 1151 + 0 1151 21783 79 0 8 89 8 0 118 0 11 83 0 1 51 7 8 111 1 0 111 21 24 9 1 2 157 12 9 13 1 36 74 0 3 88 9 8 58 chain 59430 chr17 83257441 + 54154167 54154886 L1PA7 6471 + 5749 6466 26524 8 0 1 524 1 0 177 2 0 7 chain 352624 chr17 83257441 + 54161123 54165088 L1PA4 6152 + 1229 5186 5884 127 6 5 1631 1 0 174 6 0 2020 chain 2808 chr17 83257441 + 54177686 54177769 MER89 557 + 0 122 101613 29 21 28 10 9 41 14 chain 76037 chr17 83257441 + 54201573 54202541 LTR5_Hs 974 + 0 974 22555 289 0 1 177 0 1 188 1 0 163 8 15 16 23 21 103 chain 79189 chr17 83257441 + 54205889 54207158 L1PA14 3548 + 2147 3479 21802 119 1 0 23 28 0 95 0 2 4 0 3 54 0 4 73 2 1 10 4 3 57 0 81 5 0 1 7 1 0 117 3 8 102 1 0 14 14 12 11 2 0 47 2 0 5 2 0 47 8 6 31 0 30 12 2 0 5 6 5 80 1 0 114 14 9 35 4 2 12 1 0 5 1 0 17 10 9 5 0 1 28 6 0 7 1 0 14 chain 23443 chr17 83257441 + 54226922 54227216 THE1B 368 + 72 364 51689 97 4 3 121 1 0 71 chain 27234 chr17 83257441 + 54228770 54229125 THE1B 368 + 0 368 45919 44 5 20 101 8 7 121 1 0 75 chain 27069 chr17 83257441 + 54286174 54286637 LTR12F 595 + 17 588 46171 7 0 1 8 0 1 68 1 2 15 42 0 10 1 107 46 38 78 30 1 2 196 chain 452992 chr17 83257441 + 54286675 54292740 HERV9-int 5642 + 11 5642 4303 588 4 5 112 6 0 91 49 0 38 2 1 257 3 0 5 88 3 476 1 2 32 1 2 626 0 1 64 9 9 147 289 0 537 15 17 238 0 21 712 9 10 95 0 1 50 1 2 48 6 7 74 0 3 425 0 1 519 1 0 224 9 7 36 3 1 27 1 0 60 1 0 13 28 5 19 4 0 3 2 0 17 chain 1540 chr17 83257441 + 54287835 54287899 HERV9-int 5642 + 1037 1101 76051 16 13 13 35 chain 491826 chr17 83257441 + 54316374 54322821 L1PA6 6164 + 1 6160 3376 229 1 0 219 8 0 120 1 0 218 0 17 434 1 0 60 0 1 321 0 1 704 1 0 598 0 1 265 0 1 513 3 0 44 0 1 10 310 0 147 1 7 530 1 2 161 1 0 44 1 0 466 0 1 192 0 1 20 1 0 448 0 7 96 0 1 122 1 2 155 chain 34379 chr17 83257441 + 54325873 54326263 L1PA4 6152 + 5762 6151 38445 138 1 0 251 chain 30701 chr17 83257441 + 54328570 54328938 HERV9-int 5642 + 2809 3207 41385 251 0 30 117 chain 183291 chr17 83257441 + 54328938 54331145 HERV9-int 5642 + 3208 5434 10423 172 0 2 655 0 4 26 0 2 587 0 6 127 2 10 33 0 1 20 2 0 376 2 1 47 1 0 25 0 1 4 1 0 127 chain 28817 chr17 83257441 + 54332400 54332778 LTR12F 595 + 0 480 43603 92 0 37 17 5 69 90 4 5 170 chain 37990 chr17 83257441 + 54345637 54346137 LTR7 482 + 0 480 36081 173 51 0 60 0 31 216 chain 8596 chr17 83257441 + 54381570 54381685 MER85 139 + 0 126 73456 96 4 15 15 chain 4431 chr17 83257441 + 54393490 54393541 MER53 195 + 5 56 88719 51 chain 7888 chr17 83257441 + 54398487 54398579 THE1D-int 1627 + 31 123 75156 92 chain 401589 chr17 83257441 + 54418889 54424328 L1PB1 5432 + 12 5404 5134 10 1 0 245 4 5 105 6 5 17 3 0 5 0 3 137 6 2 36 0 5 80 0 2 57 5 6 36 3 0 7 0 2 420 0 5 230 7 8 575 0 1 150 0 1 330 2 3 65 0 1 11 0 5 251 3 0 53 0 3 252 4 5 124 1 0 392 26 12 47 0 5 236 0 1 28 0 1 18 0 1 258 0 3 148 0 7 24 0 6 157 11 7 305 0 17 52 3 2 9 0 1 96 67 11 24 11 8 11 22 16 47 2 1 16 1 0 44 1 0 15 27 15 16 2 0 4 1 0 15 8 6 18 1 0 21 1 0 13 chain 368666 chr17 83257441 + 54435548 54441895 L1PA7 6471 + 0 6467 5684 196 9 8 110 1 0 4 4 5 612 10 8 269 4 8 57 4 8 312 0 1 123 16 16 302 1 0 177 9 6 39 1 0 372 2 3 93 0 1 370 0 4 103 0 1 161 1 2 289 1598 1709 58 0 1 68 13 11 114 1 0 77 0 2 221 1 3 186 0 2 163 14 11 34 3 4 5 0 1 129 3 0 8 chain 35182 chr17 83257441 + 54439199 54439691 LTR12F 595 + 0 595 37906 72 0 143 23 42 0 137 0 1 192 0 1 26 chain 7587 chr17 83257441 + 54450270 54450401 MLT1B 390 + 229 362 75896 38 27 29 66 chain 16833 chr17 83257441 + 54456608 54456948 MER57-int 2662 + 42 618 60000 27 51 44 105 7 250 28 8 0 7 9 13 66 7 11 25 chain 19925 chr17 83257441 + 54556567 54556778 L1PA3long 6157 + 5942 6153 56489 211 chain 3051 chr17 83257441 + 54628206 54628240 MLT1J2 417 + 250 284 99286 34 chain 515157 chr17 83257441 + 54639200 54645349 L1PA6 6164 + 3 6162 2510 10 6 0 6 0 6 435 6 5 1157 1 2 37 10 11 370 2 0 293 0 1 847 6 8 504 0 1 4 1 0 568 1 0 104 1 3 229 0 1 44 1 0 666 1 0 316 0 9 233 1 0 289 chain 60355 chr17 83257441 + 54691253 54691950 L1PA4 6152 + 4807 5516 26273 307 0 1 103 0 4 135 1 8 151 chain 83732 chr17 83257441 + 54697769 54698682 L1PA3long 6157 + 3311 4224 20864 913 chain 125779 chr17 83257441 + 54710414 54711925 L1PA7 6471 + 4957 6468 14587 290 0 1 9 0 1 120 4 1 64 0 7 171 1 0 840 5 0 7 chain 67857 chr17 83257441 + 54718764 54719644 L1PA10 4194 + 3277 4161 24481 61 0 2 312 0 4 386 0 3 61 2 1 9 4 1 33 1 0 11 chain 87484 chr17 83257441 + 54761892 54763259 L1PB2 3958 + 2482 3838 20138 25 10 4 93 1 0 176 16 4 19 22 23 42 0 16 40 1 0 40 16 16 234 14 17 76 2 0 54 1 0 16 8 7 55 8 6 7 5 0 88 1 0 61 8 12 4 1 0 62 1 0 16 0 3 43 1 0 9 3 1 23 2 1 63 chain 4004 chr17 83257441 + 54795020 54795070 MER58A 224 + 168 218 91423 50 chain 139937 chr17 83257441 + 54799472 54801191 L1PA7 6471 + 4750 6469 13101 205 1 0 30 1 0 207 5 6 422 2 1 239 1 2 435 13 14 158 chain 32243 chr17 83257441 + 54805304 54805700 MER51B 395 + 0 395 40157 245 1 0 150 chain 31282 chr17 83257441 + 54815523 54815938 MLT2A1 477 + 0 411 40911 6 0 1 162 4 1 34 0 1 32 0 1 144 7 3 26 chain 134039 chr17 83257441 + 54816006 54817798 HERVL-int 5654 + 0 5654 13652 104 0 1 4 1 0 273 0 3861 417 2 1 182 8 0 53 4 7 170 6 4 15 5 6 131 0 1 42 6 9 289 8 11 12 0 1 60 chain 28290 chr17 83257441 + 54817798 54818185 MLT2A1 477 + 0 385 44435 171 16 13 20 7 8 26 0 1 4 1 0 142 chain 516241 chr17 83257441 + 54820660 54826791 L1PA6 6164 + 0 6146 2459 139 12 13 31 13 14 22 1 2 523 2 0 656 0 1 930 7 3 489 11 0 119 0 1 246 0 1 33 1 4 42 1 6 253 1 2 803 0 1 28 0 4 286 0 5 1168 2 1 176 5 13 131 chain 3940 chr17 83257441 + 54846943 54846990 MER44D 709 + 63 110 91835 47 chain 20537 chr17 83257441 + 54856392 54856612 AluYa5 310 + 79 298 55733 18 1 0 201 chain 121448 chr17 83257441 + 54876259 54877834 THE1B-int 1605 + 0 1598 15270 432 0 25 218 0 3 193 5 7 406 4 5 165 14 5 133 0 1 5 chain 28378 chr17 83257441 + 54885108 54885499 MLT2A1 477 + 0 393 44305 142 10 11 16 1 5 148 2 1 16 0 2 44 4 0 8 chain 4257 chr17 83257441 + 55028528 55028612 MER20 218 + 0 82 89773 13 25 23 46 chain 44830 chr17 83257441 + 55084858 55085360 L1PA3long 6157 + 5646 6149 31681 177 0 1 325 chain 8724 chr17 83257441 + 55092028 55092308 L1PB1 5432 + 5175 5430 73164 45 104 89 17 3 1 5 1 0 14 3 1 23 1 0 23 1 0 11 1 0 14 1 0 8 1 0 4 chain 26626 chr17 83257441 + 55371767 55372435 THE1B 368 + 0 368 46794 15 2 0 25 0 5 127 308 3 21 1 3 169 chain 113814 chr17 83257441 + 55372435 55374008 THE1B-int 1605 + 0 1605 16577 12 1 6 169 1 0 245 7 32 184 16 48 10 38 6 57 1 0 4 1 2 178 10 11 108 16 17 484 0 1 31 chain 26433 chr17 83257441 + 55386124 55386526 MSTA 426 + 0 414 47078 26 0 1 180 19 22 14 14 14 43 12 20 94 chain 64658 chr17 83257441 + 55437954 55438691 L1PA6 6164 + 5424 6162 25277 119 0 1 618 chain 36338 chr17 83257441 + 55473796 55474233 LTR2 463 + 7 463 37184 126 1 0 29 7 27 274 chain 7138 chr17 83257441 + 55474995 55475092 HERVE_a-int 7009 + 135 228 77138 21 2 0 29 1 0 6 1 0 37 chain 21585 chr17 83257441 + 55487098 55487357 L1PA6 6164 + 5902 6160 54381 67 1 0 191 chain 558302 chr17 83257441 + 55501716 55507741 L1PA2 6032 + 1 6032 234 177 0 5 3633 0 1 2215 chain 161103 chr17 83257441 + 55558989 55560776 L1PA4 6152 + 4349 6137 11674 1468 0 1 319 chain 26062 chr17 83257441 + 55627996 55628369 THE1D 372 + 0 372 47641 185 40 39 148 chain 3532 chr17 83257441 + 55680296 55680367 MER20 218 + 43 116 95001 35 20 22 16 chain 240964 chr17 83257441 + 55789685 55792315 L1PA3long 6157 + 3526 6156 8452 2630 chain 308016 chr17 83257441 + 55801119 55804869 L1PA7 6471 + 2712 6467 6658 791 1 0 501 9 6 4 1 0 173 0 4 306 0 8 956 0 1 35 14 9 115 0 3 122 1 0 10 7 5 375 0 1 278 5 6 46 chain 6599 chr17 83257441 + 55885003 55885091 L1P3 4156 + 687 790 78973 58 1 16 29 chain 455109 chr17 83257441 + 55939307 55945099 L1PA8 5853 + 51 5851 4255 21 2 0 10 1 0 13 52 16 191 5 9 78 0 2 7 9 7 420 0 3 197 0 1 279 0 1 77 1 4 33 0 1 376 0 1 110 0 1 6 0 1 102 6 0 23 0 2 23 0 4 86 4 0 144 0 9 62 1 0 110 0 4 285 11 12 152 0 4 171 0 1 83 1 5 17 1 0 179 0 2 476 1 2 71 0 1 381 5 6 150 0 1 54 0 3 151 0 1 314 0 2 73 0 2 58 16 14 226 0 8 12 1 0 119 0 1 42 1 0 44 2 0 70 12 10 52 2 1 19 1 0 57 2 3 31 chain 2672 chr17 83257441 + 55950040 55950073 L1PA7 6471 + 5716 5749 102592 33 chain 17030 chr17 83257441 + 55950088 55950310 L1PA7 6471 + 5763 6024 59777 67 8 47 147 chain 27066 chr17 83257441 + 55950310 55950640 L1PA7 6471 + 6025 6357 46173 264 0 2 66 chain 7201 chr17 83257441 + 55950666 55950760 L1PA7 6471 + 6365 6459 76944 94 chain 47676 chr17 83257441 + 55952411 55952974 LTR19B 566 + 0 566 30407 210 0 1 302 0 1 15 0 1 36 chain 71151 chr17 83257441 + 55952974 55953855 THE1B-int 1605 + 723 1605 23730 876 0 1 5 chain 26345 chr17 83257441 + 55953855 55954204 THE1B 368 + 0 359 47208 44 0 15 104 1 0 34 3 0 97 1 0 65 chain 553469 chr17 83257441 + 56002401 56008616 L1PA3long 6157 + 8 6154 516 11 0 1 553 0 1 674 0 1 334 71 0 112 0 1 630 1 0 393 0 1 457 1 0 715 0 1 548 7 6 802 1 0 905 chain 136449 chr17 83257441 + 56050764 56052234 L1PA2 6032 + 3212 4682 13397 1470 chain 15541 chr17 83257441 + 56096616 56096968 L1PA15 4387 + 4021 4351 61601 76 9 8 10 7 3 12 5 4 51 1 0 27 68 60 42 22 15 22 chain 110098 chr17 83257441 + 56186819 56188082 L1PA5 6144 + 4867 6135 17066 815 0 4 309 1 2 138 chain 124879 chr17 83257441 + 56192056 56193414 L1PA2 6032 + 4673 6031 14727 1358 chain 3868 chr17 83257441 + 56215714 56215758 MER45A 178 + 72 116 92371 44 chain 4192 chr17 83257441 + 56236725 56236804 MADE1 96 - 0 96 90182 20 21 38 38 chain 23386 chr17 83257441 + 56280810 56281151 THE1B 368 + 4 368 51791 40 0 6 6 0 9 107 1 0 26 35 45 44 2 1 80 chain 33762 chr17 83257441 + 56283283 56283887 L1PB1 5432 + 4865 5427 38880 141 1 0 19 8 6 72 1 0 11 3 0 24 1 0 8 1 0 11 19 13 50 2 1 16 1 0 43 1 0 8 62 46 12 2 0 24 1 0 21 1 0 13 1 0 10 1 0 8 2 0 5 chain 92879 chr17 83257441 + 56306396 56307427 L1PA4 6152 + 4308 5340 19199 699 0 1 332 chain 2816 chr17 83257441 + 56334099 56334135 L1ME1 1623 + 1448 1484 101546 36 chain 90997 chr17 83257441 + 56337403 56338451 L1PA6 6164 + 5092 6154 19504 184 0 9 30 1 4 366 0 1 119 0 1 348 chain 18617 chr17 83257441 + 56348437 56348823 L1PA11 4918 + 4200 4578 57982 48 1 2 13 13 14 52 3 0 53 10 12 43 1 12 4 1 0 22 2 0 13 1 0 20 48 35 11 1 0 13 2 0 11 chain 553848 chr17 83257441 + 56380301 56386481 L1PA3long 6157 + 5 6157 492 959 0 1 135 0 1 664 44 0 159 0 1 276 0 1 1313 0 2 586 0 2 163 6 13 69 5 6 1801 chain 146517 chr17 83257441 + 56414285 56416917 L1MA2 4263 + 1818 4109 12574 29 13 16 14 1 2 5 1 0 10 17 6 70 2 0 128 59 40 58 3 5 33 308 0 45 30 35 62 0 9 143 16 4 5 1 0 17 1 5 85 5 3 107 17 0 14 0 14 128 0 2 343 0 2 38 0 1 31 1 0 109 0 11 120 2 0 17 7 3 75 1 0 48 1 0 79 20 17 77 84 82 91 14 7 42 1 0 4 chain 14562 chr17 83257441 + 56433465 56433816 L1PB1 5432 + 5102 5420 62834 12 1 0 24 2 1 7 1 0 10 17 11 29 0 1 15 1 0 8 2 1 16 1 0 9 1 0 34 1 0 10 73 56 24 1 0 21 1 0 13 1 0 16 chain 59327 chr17 83257441 + 56668059 56668869 Charlie3 2679 + 18 2595 26558 16 2 1 21 8 17 97 6 5 234 3 0 61 0 1747 173 0 16 189 chain 8562 chr17 83257441 + 56752648 56752959 MER51A 677 + 372 659 73536 23 164 140 22 11 12 46 1 0 44 chain 26348 chr17 83257441 + 56757566 56757926 THE1A 353 + 0 353 47202 82 11 7 21 1 0 5 18 16 222 chain 127290 chr17 83257441 + 56757926 56759459 THE1A-int 1579 + 0 1531 14389 618 1 0 112 0 1 221 0 1 358 4 0 109 0 1 110 chain 2989 chr17 83257441 + 56826652 56826685 MER5A1 166 + 98 131 99973 33 chain 22730 chr17 83257441 + 56839904 56840170 AluSp 311 + 6 288 52784 51 1 17 214 chain 170031 chr17 83257441 + 56929665 56931842 MER4-int 2692 + 115 2329 11102 442 0 10 64 0 1 227 0 2 29 3 0 29 0 1 168 18 24 24 0 1 443 0 4 130 0 5 63 1 0 7 0 2 101 0 1 237 0 2 56 0 1 71 46 51 18 chain 24283 chr17 83257441 + 56954277 56954578 AluSc 308 + 0 298 50357 29 3 0 269 chain 27953 chr17 83257441 + 56963221 56963592 MER51B 395 + 0 395 44941 40 7 26 179 1 0 125 0 6 19 chain 29617 chr17 83257441 + 56966041 56966403 PABL_A 660 + 283 644 42463 39 1 0 17 0 1 125 5 4 175 chain 86355 chr17 83257441 + 56970113 56971574 PABL_A-int 1935 + 555 1815 20351 122 0 1 207 0 1 102 1 0 83 314 6 91 0 1 95 1 6 24 0 1 26 1 0 189 5 103 89 0 3 21 4 3 86 chain 51942 chr17 83257441 + 56972503 56973150 PABL_A 660 + 0 660 28887 10 3 4 70 0 9 4 1 0 487 0 4 72 chain 30138 chr17 83257441 + 57017123 57017521 LTR7 482 + 0 477 41897 69 8 46 109 0 1 8 0 31 21 1 0 29 0 10 153 chain 15812 chr17 83257441 + 57028616 57029102 MSTA 426 + 208 424 61270 54 1 2 121 271 0 39 chain 10707 chr17 83257441 + 57056800 57057111 MER2 342 + 153 294 69035 89 170 0 52 chain 16481 chr17 83257441 + 57100831 57101036 AluSp 311 + 84 288 60403 191 1 0 13 chain 5173 chr17 83257441 + 57147644 57147750 MER21A 919 + 428 550 84806 12 16 27 29 10 15 39 chain 10294 chr17 83257441 + 57178853 57178983 MER2 342 + 131 262 69819 4 0 1 126 chain 5070 chr17 83257441 + 57219134 57219196 HY4 93 + 1 62 85307 56 1 0 5 chain 27445 chr17 83257441 + 57223000 57223302 AluYb9 318 + 0 300 45648 98 1 0 34 1 0 168 chain 22567 chr17 83257441 + 57238867 57239316 L1PB4 2604 + 2106 2548 53022 13 10 11 106 12 0 138 126 130 44 chain 4473 chr17 83257441 + 57296634 57296756 L1MD3 1191 + 1002 1109 88476 37 36 28 19 0 4 4 11 0 15 chain 9608 chr17 83257441 + 57453665 57453786 MER85 139 + 5 139 71244 37 1 0 54 0 14 29 chain 13573 chr17 83257441 + 57602107 57602324 MER30 238 + 5 238 64210 105 2 0 11 2 17 36 24 0 11 0 27 26 chain 13697 chr17 83257441 + 57693895 57694119 MER58B 340 + 49 271 64019 47 12 11 15 20 19 130 chain 2707 chr17 83257441 + 57704381 57704556 MER20B 722 + 539 721 102308 13 2 0 11 3 5 16 71 107 11 29 0 19 chain 25375 chr17 83257441 + 57709894 57710249 THE1C 375 + 0 360 48659 69 13 0 2 0 14 50 0 1 34 1 2 11 3 4 91 0 1 81 chain 17895 chr17 83257441 + 57789448 57789676 7SK 245 + 0 240 58763 122 7 19 99 chain 62627 chr17 83257441 + 57846109 57846931 SVA_B 1603 + 881 1603 25725 18 51 5 17 4 0 40 51 1 641 chain 2026 chr17 83257441 + 57846127 57846149 SVA_B 1603 + 941 963 93716 22 chain 2890 chr17 83257441 + 58011990 58012283 HSMAR2 1300 + 12 305 40961 293 chain 45331 chr17 83257441 + 58012700 58013928 LTR71B 605 + 0 605 31403 134 1 0 8 11 4 207 1 3 117 618 1 131 chain 1775 chr17 83257441 + 58014975 58015155 HSMAR2 1300 + 1114 1300 40961 128 0 7 27 1 0 24 chain 4497 chr17 83257441 + 58019025 58019078 MER58B 340 + 286 339 88345 53 chain 15560 chr17 83257441 + 58029036 58029261 L1MC3 1789 + 1003 1228 61573 4 1 0 15 1 0 35 0 1 69 9 10 91 chain 13463 chr17 83257441 + 58036303 58036466 L1MB8 1703 + 928 1091 64369 163 chain 175635 chr17 83257441 + 58130623 58132583 L1PA4 6152 + 3551 5515 10797 387 1 2 1358 0 4 85 1 0 128 chain 147810 chr17 83257441 + 58141794 58143513 SVA_D 2077 + 0 2069 12497 563 0 40 97 40 0 61 0 40 107 0 85 41 1 2 50 0 1 133 2 225 624 chain 40631 chr17 83257441 + 58179201 58179739 MLT2A2 560 + 1 560 34198 168 12 11 16 13 24 186 0 11 143 chain 5857 chr17 83257441 + 58393053 58393123 Tigger2a 444 + 131 201 81665 70 chain 12356 chr17 83257441 + 58454097 58454234 SVA_E 1901 + 1764 1901 66223 137 chain 3358 chr17 83257441 + 58466649 58466687 MER3 215 - 125 163 96493 38 chain 4850 chr17 83257441 + 58547118 58547175 MER5A1 166 + 9 66 86427 57 chain 29901 chr17 83257441 + 58632587 58632989 LTR71A 459 + 0 438 42133 68 6 10 23 0 3 71 0 1 9 1 0 15 7 6 115 0 30 87 chain 18505 chr17 83257441 + 58638382 58639417 L1PB1 5432 + 5028 5397 58095 75 14 12 23 0 3 6 1 0 9 2 0 3 2 0 10 2 0 4 631 0 47 2 1 16 1 0 44 10 6 9 3 0 16 9 0 15 28 19 27 1 0 18 1 0 6 chain 45954 chr17 83257441 + 58657620 58658304 LTR8 732 + 0 732 31075 19 0 1 10 0 9 116 0 7 79 0 2 62 16 43 154 0 5 19 65 62 144 chain 23076 chr17 83257441 + 58667920 58668243 MER31A 484 + 9 348 52252 87 2 0 23 19 37 192 chain 44342 chr17 83257441 + 58678251 58678818 L1PA6 6164 + 5581 6149 31921 314 3 4 72 0 34 9 39 5 130 chain 34663 chr17 83257441 + 58687033 58687488 LTR3A 482 + 0 481 38243 157 6 15 23 0 14 172 0 2 23 1 0 11 0 2 62 chain 14387 chr17 83257441 + 58749162 58749367 MER30 238 + 18 238 63050 81 14 23 37 3 9 70 chain 28519 chr17 83257441 + 58836739 58837039 AluYg6 310 + 0 300 44089 300 chain 7581 chr17 83257441 + 58896616 58897131 Tigger1 2417 + 805 1322 30244 108 0 2 407 chain 77073 chr17 83257441 + 58898279 58899168 L1PA6 6164 + 5275 6162 22298 556 0 1 323 3 0 7 chain 2046 chr17 83257441 + 58899747 58899886 Tigger1 2417 + 1593 1732 30244 139 chain 22172 chr17 83257441 + 58992972 58993307 THE1B 368 + 2 368 53605 42 11 26 102 1 0 25 35 52 119 chain 5302 chr17 83257441 + 58994372 58994433 MER2 342 + 153 214 84188 61 chain 6028 chr17 83257441 + 59099307 59099384 Tigger3c 601 + 293 370 80978 77 chain 3882 chr17 83257441 + 59170269 59170387 MER53 195 - 27 151 92276 43 36 38 11 10 12 13 0 2 5 chain 3198 chr17 83257441 + 59173027 59173062 LTR12C 1709 + 1051 1086 97910 35 chain 23438 chr17 83257441 + 59274536 59274801 AluY 311 + 39 306 51696 93 0 1 26 0 1 146 chain 45228 chr17 83257441 + 59416550 59417062 MER9a2 513 + 0 513 31461 383 0 1 129 chain 137582 chr17 83257441 + 59499447 59501164 SVA_D 2077 + 20 2077 13298 34 0 8 541 153 0 163 3 0 32 0 3 102 2 83 16 0 404 671 chain 2375 chr17 83257441 + 59500022 59500154 SVA_D 2077 + 487 542 78322 1 40 0 19 37 0 35 chain 2143 chr17 83257441 + 59500041 59500063 SVA_D 2077 + 542 564 102139 22 chain 7422 chr17 83257441 + 59596005 59596096 Tigger2b_Pri 1066 + 195 289 76338 73 0 3 18 chain 5493 chr17 83257441 + 59600212 59600274 MER6B 211 - 0 62 83264 62 chain 17155 chr17 83257441 + 59713210 59713405 L1PA5 6144 + 5943 6138 59627 195 chain 9238 chr17 83257441 + 59849947 59850067 MER4A 717 + 1 123 72038 46 0 2 74 chain 22887 chr17 83257441 + 59850094 59850388 AluYk4 311 + 0 295 52527 48 9 10 237 chain 12171 chr17 83257441 + 59881292 59881431 MER85 139 + 0 139 66527 139 chain 35757 chr17 83257441 + 59979495 59979964 LTR15 485 + 0 478 37565 74 0 2 31 0 1 16 4 0 23 5 7 20 0 6 102 0 4 151 1 0 5 2 0 14 0 1 21 chain 6450 chr17 83257441 + 59982071 59982196 L1ME2z 1083 + 390 524 79516 72 38 47 15 chain 4415 chr17 83257441 + 59985868 59985990 L1MC 810 + 369 490 88806 45 53 52 24 chain 24897 chr17 83257441 + 60062735 60063058 THE1A 353 + 0 330 49440 80 6 7 22 2 1 28 0 8 74 1 0 110 chain 17557 chr17 83257441 + 60153356 60153634 MER41C 542 + 237 542 59170 74 50 77 154 chain 3413 chr17 83257441 + 60290900 60290938 MER21B 843 + 646 684 95976 38 chain 23427 chr17 83257441 + 60306678 60307088 L1MA4 2864 + 845 1253 51710 144 5 9 4 1 0 32 67 65 109 3 0 45 chain 28633 chr17 83257441 + 60336433 60336743 AluYa5 310 + 0 309 43896 132 1 0 177 chain 59838 chr17 83257441 + 60343055 60343749 L1P1 4361 + 2384 3079 26419 362 0 1 332 chain 31066 chr17 83257441 + 60490996 60491403 THE1B-int 1605 + 16 422 41079 103 12 11 151 2 0 5 0 2 134 chain 3245 chr17 83257441 + 60495837 60495879 L1MB7 1623 + 1388 1429 97524 34 1 0 7 chain 25357 chr17 83257441 + 60506757 60507047 AluSc 308 + 2 292 48690 290 chain 11778 chr17 83257441 + 60521716 60521889 MER30 238 + 38 238 67256 72 4 28 19 1 7 28 3 0 46 chain 15420 chr17 83257441 + 60531941 60532143 L1M1 2793 + 2362 2562 61756 72 1 0 118 1 0 10 chain 135226 chr17 83257441 + 60550877 60552892 SVA_F 1814 + 335 1814 13518 613 450 14 251 100 0 601 chain 2737 chr17 83257441 + 60551490 60551542 SVA_F 1814 + 1012 1142 55002 12 2 80 38 chain 13688 chr17 83257441 + 60551542 60551768 SVA_F 1814 + 966 1142 43580 125 50 0 51 chain 3366 chr17 83257441 + 60551667 60551717 SVA_F 1814 + 851 900 74379 4 1 0 25 0 1 17 2 1 1 chain 15788 chr17 83257441 + 60551768 60551940 SVA_F 1814 + 966 1138 42921 172 chain 6763 chr17 83257441 + 60552214 60552291 SVA_F 1814 + 962 1037 64150 39 1 0 10 1 0 26 chain 25304 chr17 83257441 + 60573550 60574052 LTR35A 463 + 0 463 48775 14 4 0 12 4 0 11 1 0 19 40 28 25 0 1 15 19 5 40 1 0 41 2 0 28 29 24 13 1 0 11 5 2 24 2 0 5 0 11 12 8 6 116 chain 3808 chr17 83257441 + 60614386 60614431 LTR12C 1709 + 654 699 92785 45 chain 24380 chr17 83257441 + 60685184 60685474 AluSp 311 + 0 306 50200 52 0 18 62 1 0 45 1 0 129 chain 43809 chr17 83257441 + 60703957 60704555 Tigger2 2703 + 914 1514 32245 158 0 2 97 1 0 27 0 1 45 18 17 196 7 8 49 chain 32421 chr17 83257441 + 60768208 60768653 MLT2A1 477 + 0 475 40021 169 4 1 215 7 0 6 14 54 30 chain 8056 chr17 83257441 + 60779217 60779353 Tigger4b 360 + 55 220 74743 46 15 44 53 2 0 5 0 2 15 chain 5198 chr17 83257441 + 60786231 60786296 tRNA-Lys-AAA 73 + 0 67 84684 34 0 2 31 chain 49436 chr17 83257441 + 60814892 60815455 L1PA5 6144 + 5576 6142 29790 106 0 6 440 3 0 14 chain 25507 chr17 83257441 + 60921369 60921636 AluYa5 310 + 38 305 48475 267 chain 3185 chr17 83257441 + 60994215 60994253 Charlie4a 502 + 225 263 98031 38 chain 6526 chr17 83257441 + 61051213 61051420 L1MD2 1676 + 1452 1652 79249 44 80 74 36 22 21 25 chain 556112 chr17 83257441 + 61110229 61116238 L1PA2 6032 + 0 6016 353 708 1 8 5300 chain 34695 chr17 83257441 + 61237097 61237617 LTR12F 595 + 0 561 38226 25 0 1 78 20 88 18 13 5 67 21 0 106 1 0 4 0 1 47 1 2 119 chain 39272 chr17 83257441 + 61284000 61284574 LTR12_ 688 + 0 688 35171 180 0 24 43 52 43 51 0 2 60 6 103 125 2 3 18 1 0 36 chain 5300 chr17 83257441 + 61425324 61425462 MER20 218 + 14 161 84195 14 62 71 62 chain 32931 chr17 83257441 + 61538435 61539244 Tigger1 2417 + 654 1170 39563 108 1 6 73 17 20 16 0 1 42 6 7 128 6 7 6 0 5 20 321 12 65 chain 22927 chr17 83257441 + 61565414 61565744 L1PA8 5853 + 5530 5853 52476 34 1 0 46 2 0 69 15 13 48 3 2 18 1 0 93 chain 22519 chr17 83257441 + 61605354 61605589 AluYb8 318 + 81 316 53096 235 chain 21914 chr17 83257441 + 61649145 61649506 MER47A 366 + 0 366 53952 18 48 47 38 1 2 127 0 4 82 4 5 43 chain 59535 chr17 83257441 + 61666307 61667022 L1PA7 6471 + 5737 6465 26500 575 12 29 117 4 0 7 chain 417571 chr17 83257441 + 61673057 61677966 L1PA6 6164 + 4 6159 4914 246 1 0 537 0 17 126 1 0 509 7 12 559 1 6 249 0 6 54 1 2 72 0 4 580 0 15 192 0 1 4 8 6 9 0 1 6 0 1 237 1 4 248 19 1201 408 0 8 708 0 1 126 chain 26075 chr17 83257441 + 61690938 61691246 L1PA5 6144 + 5838 6144 47616 156 2 0 150 chain 4208 chr17 83257441 + 61762961 61763007 L1MA7 2200 + 1867 1913 90071 46 chain 112730 chr17 83257441 + 61773279 61774592 L1PA6 6164 + 4872 6162 16721 342 28 4 503 0 1 440 chain 64889 chr17 83257441 + 61818748 61820032 L1MA3 4352 + 3403 4352 25218 10 1 0 4 0 1 25 1 4 104 308 0 319 0 2 20 7 8 183 1 0 4 0 1 4 46 21 64 1 0 23 0 2 58 2 0 22 1 0 6 1 0 27 2 1 12 6 2 22 chain 44640 chr17 83257441 + 61825321 61826108 L1PA13 3608 + 2818 3548 31769 196 1 10 104 54 18 13 1 0 61 5 3 46 16 14 52 1 0 56 1 0 5 2 0 46 2 0 6 2 0 17 2 1 17 0 3 11 18 7 11 17 10 10 2 1 12 chain 8601 chr17 83257441 + 61841984 61842112 L1MA5 2750 + 2486 2612 73449 35 8 7 36 1 0 48 chain 3446 chr17 83257441 + 61911304 61911364 Charlie1a 1436 + 1328 1387 95692 26 11 10 23 chain 17134 chr17 83257441 + 61915848 61916120 L1PA16 3655 + 2094 2368 59661 118 49 50 34 0 1 71 chain 27933 chr17 83257441 + 61948804 61949103 AluYa5 310 + 0 297 44982 118 2 0 179 chain 19859 chr17 83257441 + 61987172 61987428 AluSg7 307 + 18 275 56599 113 10 11 133 chain 21045 chr17 83257441 + 62047384 62047719 L1PA8 5853 + 5524 5853 55068 40 1 0 44 3 1 66 33 31 33 3 2 19 1 0 32 2 0 6 0 2 4 0 1 48 chain 58194 chr17 83257441 + 62072982 62073633 SVA_B 1603 + 872 1602 26905 7 4 0 14 0 83 626 chain 8794 chr17 83257441 + 62122319 62122419 HY3 101 + 0 100 72997 100 chain 23061 chr17 83257441 + 62131549 62131846 AluSg4 309 + 2 298 52277 201 10 9 86 chain 13175 chr17 83257441 + 62143663 62143823 MER61E 571 + 0 173 64820 82 1 14 77 chain 38178 chr17 83257441 + 62147304 62147946 LTR7B 505 + 0 505 35926 10 0 2 172 100 1 25 34 0 19 2 0 5 29 23 65 0 1 102 0 1 79 chain 22860 chr17 83257441 + 62228349 62228596 L1PA3long 6157 + 5910 6157 52563 247 chain 14151 chr17 83257441 + 62323851 62324016 L1P3 4156 + 3059 3224 63376 165 chain 30960 chr17 83257441 + 62324019 62324428 L1PA8 5853 + 5440 5853 41161 46 0 8 70 1 0 20 0 2 23 2 0 70 1 0 9 2 1 51 2 1 19 1 0 40 0 1 52 chain 241677 chr17 83257441 + 62324431 62327098 L1PA4 6152 + 3211 5881 8436 729 0 1 121 0 1 59 0 1 1758 chain 29026 chr17 83257441 + 62339644 62339996 THE1A 353 + 0 353 43280 110 1 0 212 0 2 29 chain 374077 chr17 83257441 + 62357505 62362302 L1PA8 5853 + 252 5041 5585 18 27 14 17 3 7 120 1 22 52 17 1 58 1 0 117 15 15 50 1 0 4 0 1 1276 17 0 67 0 4 699 8 9 67 2 1 54 0 1 29 0 4 327 0 1 480 0 1 224 0 2 301 0 1 4 1 0 195 1 0 388 0 1 79 0 3 43 2 0 32 chain 8115 chr17 83257441 + 62369373 62369463 L1PA2 6032 + 5942 6032 74601 90 chain 16535 chr17 83257441 + 62378723 62378934 L1PA7 6471 + 6267 6470 60324 40 9 1 162 chain 4929 chr17 83257441 + 62383104 62383166 U7 62 + 1 62 85998 24 1 0 37 chain 2858 chr17 83257441 + 62440320 62440370 MADE1 96 + 29 95 101160 13 5 21 32 chain 26395 chr17 83257441 + 62444974 62445304 L1PA7 6471 + 6141 6470 47127 180 7 6 143 chain 6325 chr17 83257441 + 62473599 62473678 MER5A 189 + 108 187 79909 79 chain 9167 chr17 83257441 + 62545298 62545401 Harlequin-int 5206 + 485 588 72195 103 chain 27508 chr17 83257441 + 62695372 62696181 LTR12F 595 + 0 595 45571 57 0 4 12 59 0 27 0 85 26 13 28 47 0 64 34 29 19 76 3 0 28 310 0 88 chain 25209 chr17 83257441 + 62772097 62772452 THE1B 368 + 0 365 48930 169 1 0 34 7 11 10 10 18 64 7 6 53 chain 287003 chr17 83257441 + 62783259 62786540 L1PA6 6164 + 2883 6160 7230 110 0 1 195 0 1 81 0 2 577 0 1 714 1 0 83 0 1 30 8 7 896 6 1 571 3 0 6 chain 13526 chr17 83257441 + 62817091 62817268 L1MA2 4263 + 3806 3986 64279 67 2 6 87 1 0 20 chain 22283 chr17 83257441 + 62850321 62850571 AluSc 308 + 58 308 53433 250 chain 43656 chr17 83257441 + 62955333 62955876 MLT2A2 560 + 0 560 32347 406 0 11 72 0 1 39 0 5 26 chain 46945 chr17 83257441 + 62976579 62977160 LTR10C 591 + 0 584 30679 34 2 0 86 16 19 371 0 2 72 chain 32727 chr17 83257441 + 62996214 62996636 MER57A1 433 + 0 431 39732 188 0 11 83 2 0 149 chain 8108 chr17 83257441 + 63328503 63328780 L1MA7 2200 + 1871 2103 74622 78 2 0 26 147 104 24 chain 152695 chr17 83257441 + 63455803 63457690 SVA_D 2077 + 0 2074 12190 14 4 0 45 0 2 43 0 27 376 0 37 143 0 40 168 0 83 38 0 51 127 49 0 62 36 65 57 0 12 11 50 9 664 chain 2160 chr17 83257441 + 63456761 63456790 SVA_D 2077 + 1321 1350 38470 29 chain 2497 chr17 83257441 + 63456872 63456908 SVA_D 2077 + 1029 1067 36911 7 0 2 29 chain 3469 chr17 83257441 + 63456976 63457026 SVA_D 2077 + 1135 1185 36911 50 chain 36318 chr17 83257441 + 63460266 63460779 MER41C 542 + 6 535 37202 43 0 1 17 0 8 13 4 8 55 18 19 118 0 1 25 1 2 219 chain 14323 chr17 83257441 + 63505546 63505795 MSTA 426 + 148 420 63162 20 1 3 45 0 2 7 2 5 8 3 0 10 1 2 6 1 0 40 3 23 18 10 9 74 chain 3570 chr17 83257441 + 63539151 63539194 MIRc 230 + 68 111 94657 43 chain 3635 chr17 83257441 + 63641548 63641588 MADE1 96 + 56 96 94137 40 chain 7051 chr17 83257441 + 63644549 63644636 Charlie1a 1436 + 1318 1405 77439 87 chain 5539 chr17 83257441 + 63649015 63649110 MER3 215 + 13 107 83084 46 6 0 6 7 12 30 chain 24185 chr17 83257441 + 63812743 63813035 AluSc5 308 + 1 291 50518 63 2 0 227 chain 26424 chr17 83257441 + 64011127 64012179 L1MA8 2339 + 1478 2045 47092 53 638 162 70 4 5 72 4 0 54 0 3 5 3 0 20 8 4 32 1 0 51 1 0 36 chain 37474 chr17 83257441 + 64037762 64038326 MER51A 677 + 0 658 36421 132 7 102 115 9 8 54 0 5 27 14 15 15 13 12 94 9 4 75 chain 27157 chr17 83257441 + 64124370 64124736 THE1B 368 + 0 368 46030 15 2 0 25 0 5 127 9 8 188 chain 3367 chr17 83257441 + 64141483 64141524 LTR54 533 + 425 467 96406 37 0 1 4 chain 35888 chr17 83257441 + 64179079 64179613 LTR12F 595 + 0 588 37480 54 0 4 17 0 110 25 65 7 147 0 1 30 3 0 193 chain 21104 chr17 83257441 + 64285834 64286140 THE1B 368 + 0 317 55007 70 0 2 97 1 0 29 41 51 68 chain 25410 chr17 83257441 + 64301825 64302125 AluYa5 310 + 13 310 48611 51 2 0 41 1 0 205 chain 5763 chr17 83257441 + 64324914 64324983 MER41B 635 + 478 547 82076 69 chain 5586 chr17 83257441 + 64337791 64338009 MER34A1 583 + 10 534 82871 54 118 419 25 5 10 16 chain 278281 chr17 83257441 + 64363941 64366984 L1PA3long 6157 + 3111 6157 7482 521 7 10 2515 chain 7778 chr17 83257441 + 64375865 64376021 L1PB1 5432 + 5236 5383 75419 45 1 0 15 2 0 6 15 6 18 3 1 5 1 0 14 2 0 14 0 8 15 chain 22677 chr17 83257441 + 64380049 64380335 AluSq2 311 + 0 291 52856 132 0 2 15 4 7 135 chain 6692 chr17 83257441 + 64400624 64400700 L1MB7 1623 + 1111 1187 78663 76 chain 39390 chr17 83257441 + 64426447 64427098 MER4A 717 + 0 709 35089 93 0 6 29 13 5 66 0 1 137 10 0 30 0 1 77 1 0 4 0 1 26 104 172 61 chain 26539 chr17 83257441 + 64435707 64436063 THE1B 368 + 0 368 46914 44 8 23 105 1 0 127 3 1 68 chain 57513 chr17 83257441 + 64445313 64445965 L1PA6 6164 + 5510 6162 27101 652 chain 45690 chr17 83257441 + 64577036 64577554 L1PA5 6144 + 5609 6134 31214 155 0 7 363 chain 24493 chr17 83257441 + 64589468 64589860 MER1A 529 + 6 451 50031 18 27 22 28 10 0 8 2 53 79 16 27 161 0 6 43 chain 53995 chr17 83257441 + 64601292 64602317 L1PB1 5432 + 4568 5424 28230 59 3 0 60 28 22 389 0 1 4 153 11 20 1 0 4 27 30 52 2 1 10 7 6 44 1 0 19 2 0 9 8 1 14 2 0 8 1 0 14 2 0 24 1 0 22 1 0 12 1 0 14 1 0 6 chain 150789 chr17 83257441 + 64608960 64610755 L1PA7 6471 + 4621 6459 12300 57 1 28 502 1 0 258 0 5 20 0 1 10 0 2 88 7 11 8 0 5 36 1 0 655 17 18 134 chain 7523 chr17 83257441 + 64677584 64677733 MER33 330 + 74 221 76070 49 3 0 7 1 5 31 11 14 16 6 0 25 chain 17550 chr17 83257441 + 64714344 64714600 AluSp 311 + 61 298 59178 47 4 5 110 16 0 54 5 1 20 chain 119638 chr17 83257441 + 64715996 64717361 SVA_D 2077 + 0 2073 15585 4 1 0 6 1 0 6 1 0 12 0 11 400 0 116 341 11 595 582 chain 6415 chr17 83257441 + 64773264 64773438 L1PB1 5432 + 5238 5388 79620 41 2 1 21 67 45 24 1 0 18 chain 77331 chr17 83257441 + 64874260 64875114 SVA_C 1631 + 647 1631 22240 182 0 133 56 1 0 601 2 0 12 chain 6193 chr17 83257441 + 64925887 64925962 MER41B 635 + 165 250 80382 21 0 10 54 chain 79031 chr17 83257441 + 64930021 64930983 LTR5_Hs 974 + 0 974 21861 287 1 2 533 5 12 37 2 0 20 0 6 77 chain 27823 chr17 83257441 + 64948579 64948874 AluYd8 298 + 0 295 45152 295 chain 3151 chr17 83257441 + 64952607 64952662 MLT1B 390 + 12 59 98356 10 6 0 5 2 0 32 chain 13470 chr17 83257441 + 65019283 65019523 L1MA2 4263 + 3877 4104 64355 61 5 1 16 16 14 85 20 13 37 chain 27355 chr17 83257441 + 65083951 65084272 L1PA6 6164 + 5839 6162 45756 312 0 2 9 chain 90907 chr17 83257441 + 65095725 65096853 L1PA8A 6298 + 5155 6290 19523 198 0 1 13 6 9 70 0 1 35 3 0 6 1 3 79 0 2 450 3 4 264 chain 26818 chr17 83257441 + 65116564 65116913 THE1C 375 + 0 350 46514 180 6 7 163 chain 33753 chr17 83257441 + 65158897 65159339 LTR7 482 + 0 474 38884 75 1 0 25 22 16 134 0 30 35 0 9 150 chain 72098 chr17 83257441 + 65236785 65237814 MER11B 1079 + 27 1053 23514 23 5 96 29 92 1 75 0 1 12 3 0 46 0 4 354 1 0 98 6 0 113 0 1 48 0 1 124 chain 33480 chr17 83257441 + 65262923 65263362 L1PA16 3655 + 3141 3578 39107 60 1 0 82 9 7 268 0 1 19 chain 11043 chr17 83257441 + 65300061 65300220 MLT1B 390 + 216 376 68494 11 11 13 132 1 0 4 chain 13582 chr17 83257441 + 65315054 65315510 L1PB1 5432 + 5020 5429 64192 41 49 42 11 9 0 20 1 0 8 3 2 12 19 13 43 1 0 7 1 0 18 11 10 32 89 74 17 1 0 22 1 0 12 1 0 10 1 0 11 1 0 4 chain 19829 chr17 83257441 + 65427778 65428023 L1P5 443 + 192 437 56641 245 chain 19579 chr17 83257441 + 65428328 65428678 L1PB1 5432 + 5103 5422 56924 11 1 0 24 1 0 9 1 0 10 6 2 8 2 0 69 1 0 44 1 0 16 1 0 6 16 6 19 2 0 5 2 1 13 2 0 24 1 0 21 1 0 13 1 0 14 1 0 4 chain 21199 chr17 83257441 + 65445795 65446083 L1PA8 5853 + 5564 5846 54884 44 2 0 69 3 2 11 1 0 49 3 2 19 1 0 86 chain 127935 chr17 83257441 + 65483805 65485250 SVA_D 2077 + 19 2077 14289 15 5 2 24 0 2 154 1 0 348 0 40 96 0 40 138 0 535 664 chain 14637 chr17 83257441 + 65520990 65522050 MLT1C 463 + 0 463 62752 118 851 254 91 chain 17377 chr17 83257441 + 65620101 65620432 L1PB1 5432 + 5021 5327 59383 82 1 0 10 1 0 17 5 4 15 1 0 9 18 12 50 2 1 16 1 0 40 7 6 13 24 12 19 chain 4387 chr17 83257441 + 65729399 65729455 MADE1 96 - 2 90 88954 36 0 32 20 chain 40812 chr17 83257441 + 65758865 65759415 MER41A 554 + 0 554 34087 435 34 39 6 1 0 74 chain 104170 chr17 83257441 + 65781171 65782817 L1PA16 3655 + 1898 3589 17801 74 42 63 35 12 13 85 11 5 66 8 6 24 8 7 251 9 3 36 0 4 103 2 1 106 1 2 74 1 4 19 32 38 74 13 11 8 0 3 78 8 13 96 7 6 80 16 14 115 5 6 45 7 31 80 3 0 12 chain 43144 chr17 83257441 + 65826811 65827352 MLT2A2 560 + 0 560 32688 399 3 14 52 0 8 87 chain 177617 chr17 83257441 + 65831870 65834444 L1PA14 3548 + 953 3485 10697 338 6 3 209 14 5 36 0 1 412 10 7 239 1 0 170 6 8 117 0 3 28 8 7 123 0 1 4 0 1 11 0 1 11 10 0 35 2 1 4 0 1 113 0 9 87 3 1 14 28 26 14 16 12 105 2 0 5 2 0 16 2 0 6 1 0 84 7 6 104 1 0 11 5 1 36 4 2 10 2 1 6 1 0 16 1 0 41 6 0 10 1 0 20 chain 113048 chr17 83257441 + 65836796 65838106 SVA_B 1603 + 0 1603 16670 19 23 38 139 1 0 517 0 281 603 2 0 6 chain 15464 chr17 83257441 + 65857114 65857303 MER107 203 + 12 203 61705 102 2 1 61 0 3 24 chain 3404 chr17 83257441 + 65879485 65879524 MLT1D 503 + 463 502 96031 39 chain 217942 chr17 83257441 + 65903546 65906422 L1PA7 6471 + 3891 6464 9096 512 0 12 1207 0 2 168 0 1 150 0 1 53 323 0 114 0 5 198 1 0 150 chain 145271 chr17 83257441 + 65936790 65938432 SVA_D 2077 + 11 2077 12669 5 2 0 463 0 39 169 0 40 105 0 171 31 1 2 142 0 1 45 1 0 1 0 176 37 1 0 639 chain 20242 chr17 83257441 + 65956144 65956384 L1PB1 5432 + 4858 5098 56088 240 chain 28316 chr17 83257441 + 65962596 65962952 THE1B 368 + 2 368 44387 11 2 0 24 0 5 99 0 4 25 1 0 136 0 4 58 chain 17485 chr17 83257441 + 65995725 65996063 THE1B 368 + 22 368 59257 84 10 11 17 1 2 31 71 78 61 7 6 56 chain 8558 chr17 83257441 + 66058454 66058567 L1PA16 3655 + 2195 2309 73545 44 1 2 68 chain 2699 chr17 83257441 + 66063367 66063419 L1PB3 3668 + 3541 3588 102351 25 7 3 13 1 0 6 chain 144541 chr17 83257441 + 66075695 66077762 L1PBa1 4058 + 12 2054 12726 5 3 0 19 10 0 10 19 16 120 12 12 64 1 0 77 6 5 211 3 1 4 1 0 10 1 0 44 15 14 29 12 13 439 4 3 40 9 13 88 20 19 101 6 11 74 2 0 148 2 1 64 1 0 6 1 0 50 5 0 331 chain 139020 chr17 83257441 + 66079506 66081171 L1PA7 6471 + 4809 6469 13185 126 3 1 103 2 1 34 0 1 522 6 4 21 2 0 198 0 1 648 chain 4237 chr17 83257441 + 66082057 66082106 U5 65 + 1 50 89899 49 chain 12465 chr17 83257441 + 66095396 66095775 L1MA8 2339 + 2009 2339 66043 90 2 4 11 27 7 38 7 4 26 15 9 11 112 90 40 chain 17807 chr17 83257441 + 66105189 66105486 L1MA3 4352 + 0 290 58882 15 44 42 98 1 0 25 4 0 110 chain 15326 chr17 83257441 + 66110694 66110958 L1PA14 3548 + 3243 3483 61876 4 1 0 94 5 2 36 4 2 12 1 0 5 1 0 16 1 0 9 8 0 32 6 0 10 1 0 18 chain 546249 chr17 83257441 + 66155104 66161842 L1PA7 6471 + 11 6470 956 392 4 0 261 6 20 528 1 5 338 0 1 197 0 1 15 0 4 859 8 0 608 316 3 342 0 2 659 1 0 159 0 1 119 0 10 90 1 0 597 0 4 400 0 6 344 0 1 160 2 0 121 0 1 42 1 2 167 chain 12984 chr17 83257441 + 66204902 66205308 L1M1 2793 + 654 1029 65134 6 2 0 34 117 82 15 19 18 16 0 10 4 1 0 53 15 12 55 21 23 18 4 3 26 chain 3892 chr17 83257441 + 66218598 66218691 L1MC4 1079 + 714 805 92203 21 33 31 39 chain 29493 chr17 83257441 + 66244682 66245113 MER4A1 472 + 0 472 42617 15 8 10 16 6 13 126 16 52 170 7 3 67 chain 5821 chr17 83257441 + 66267742 66267831 5S 121 + 0 90 81815 24 11 12 54 chain 97521 chr17 83257441 + 66268936 66269992 SVA_F 1814 + 598 1814 18585 290 0 112 89 0 49 666 1 0 10 chain 5616 chr17 83257441 + 66382730 66382884 MER20 218 + 50 190 82724 17 9 10 7 2 0 56 48 35 15 chain 26897 chr17 83257441 + 66457514 66457881 THE1C 375 + 0 375 46411 63 6 11 68 0 4 38 1 0 129 0 1 34 2 1 26 chain 4023 chr17 83257441 + 66753832 66753935 MLT1B 390 + 248 357 91290 12 30 31 19 8 13 34 chain 3131 chr17 83257441 + 66755844 66755879 tRNA-Gly-GGG 71 + 0 35 98541 35 chain 4515 chr17 83257441 + 66767207 66767375 MER6B 211 - 30 211 88235 29 73 86 66 chain 36373 chr17 83257441 + 66844976 66845458 L1PA8 5853 + 5377 5853 37158 143 0 1 43 2 1 44 2 0 69 13 10 51 3 2 9 0 1 9 1 0 93 chain 14820 chr17 83257441 + 66860744 66860950 MER30 238 + 0 221 62500 96 17 29 71 0 3 22 chain 61371 chr17 83257441 + 67064669 67065725 MER4E 760 + 0 752 26017 15 0 1 64 0 1 57 0 2 30 1 0 177 307 0 405 chain 17476 chr17 83257441 + 67197048 67197406 THE1B 368 + 0 368 59262 109 93 86 6 0 1 12 25 39 51 0 2 62 chain 109268 chr17 83257441 + 67294577 67296138 LTR12C 1709 + 0 1709 17147 24 9 18 25 0 1 210 17 18 42 0 43 83 50 46 140 0 119 68 1 0 272 15 12 94 20 13 43 15 6 68 0 2 113 8 6 153 17 16 74 chain 6416 chr17 83257441 + 67300583 67300703 L1PB1 5432 + 5308 5420 79615 19 3 1 4 1 0 14 2 0 24 1 0 21 4 3 10 1 0 16 chain 14290 chr17 83257441 + 67324762 67324913 L1HS 6032 + 5881 6032 63209 151 chain 29764 chr17 83257441 + 67328337 67328784 LTR7B 505 + 0 490 42283 105 0 10 69 6 68 28 29 0 38 0 1 46 1 0 23 0 1 52 14 13 36 chain 2004 chr17 83257441 + 67330168 67330451 THE1B 368 + 0 294 55628 15 2 0 22 0 5 34 11 20 74 17 16 108 chain 115759 chr17 83257441 + 67330839 67332386 THE1B-int 1605 + 0 1593 16280 70 0 1 15 41 5 141 0 11 157 0 8 22 0 25 76 0 2 37 20 49 62 0 1 460 0 4 186 1 2 259 chain 8946 chr17 83257441 + 67332893 67333004 THE1B 368 + 183 294 72676 111 chain 510 chr17 83257441 + 67333005 67333077 THE1B 368 + 294 366 55628 72 chain 32620 chr17 83257441 + 67333997 67334456 PABL_A 660 + 0 442 39845 235 23 1 42 2 1 107 0 3 27 6 9 17 chain 7883 chr17 83257441 + 67361964 67362052 MER85 139 + 8 96 75172 88 chain 2508 chr17 83257441 + 67385374 67385422 LTR12 884 + 209 274 103609 20 9 26 19 chain 23426 chr17 83257441 + 67424814 67425168 LTR7B 505 + 0 441 51712 27 1 12 69 0 10 57 0 38 19 1 0 5 19 13 13 0 33 69 1 0 23 0 1 15 0 2 35 chain 50631 chr17 83257441 + 67426121 67426718 L1PA8A 6298 + 5693 6291 29338 510 1 2 86 chain 62268 chr17 83257441 + 67470557 67471222 SVA_F 1814 + 1151 1814 25803 26 1 0 10 1 0 627 chain 5831 chr17 83257441 + 67471493 67471573 MADE1 96 + 0 96 81782 42 1 17 37 chain 8715 chr17 83257441 + 67476873 67476981 MER5A1 166 + 14 122 73180 108 chain 16997 chr17 83257441 + 67509300 67509540 AluSx4 309 + 49 284 59807 76 24 16 6 0 3 134 chain 24811 chr17 83257441 + 67597949 67598261 AluSc5 308 + 8 305 49576 248 19 4 45 chain 29093 chr17 83257441 + 67631347 67631658 AluYk12 309 + 0 309 43198 286 2 0 23 chain 22760 chr17 83257441 + 67727399 67727669 AluSp 311 + 20 294 52739 49 0 3 11 0 1 210 chain 6929 chr17 83257441 + 67792615 67792701 HSMAR2 1300 + 1119 1205 77854 86 chain 24644 chr17 83257441 + 67803965 67804260 AluY 311 + 6 304 49804 125 0 2 55 0 1 115 chain 15803 chr17 83257441 + 67905847 67906047 L1PA5 6144 + 5930 6132 61283 68 4 5 119 0 1 9 chain 5520 chr17 83257441 + 67958350 67958418 MER41B 635 + 172 250 83158 23 0 10 45 chain 19079 chr17 83257441 + 68027653 68027881 AluY 311 + 40 258 57464 86 10 0 132 chain 97206 chr17 83257441 + 68051692 68053068 LTR12C 1709 + 2 1697 18635 264 0 1 169 0 1 355 1 319 8 2 0 105 0 4 200 1 0 66 133 0 20 1 132 51 chain 108674 chr17 83257441 + 68080473 68082166 LTR12C 1709 + 0 1709 17220 76 1 0 204 3 0 6 5 10 42 5 48 46 1 0 32 18 17 222 41 0 134 1 0 112 4 0 122 0 47 97 44 13 64 96 95 21 7 14 189 16 14 84 chain 2831 chr17 83257441 + 68081134 68081175 LTR12C 1709 + 822 862 42137 15 1 0 25 chain 115165 chr17 83257441 + 68099100 68100615 LTR12C 1709 + 0 1709 16360 260 0 1 175 0 1 85 0 1 153 0 41 39 0 2 79 1 0 83 0 119 71 1 0 7 3 1 106 0 4 67 49 79 216 8 7 112 chain 29152 chr17 83257441 + 68164603 68164986 MER75 514 + 45 429 43118 10 3 4 4 1 0 30 0 1 335 chain 3538 chr17 83257441 + 68165318 68165360 MER75B 242 + 147 189 94958 42 chain 5418 chr17 83257441 + 68165420 68165482 MER75B 242 + 153 215 83612 62 chain 3398 chr17 83257441 + 68170973 68171012 MER20B 722 + 577 616 96095 39 chain 12160 chr17 83257441 + 68180319 68180458 LTR12C 1709 + 928 1067 66548 139 chain 7818 chr17 83257441 + 68180458 68180574 LTR12C 1709 + 707 986 71627 53 10 173 53 chain 12019 chr17 83257441 + 68190559 68190753 THE1B 368 + 55 248 66819 60 15 17 40 3 2 24 3 1 49 chain 98642 chr17 83257441 + 68207674 68209028 LTR12C 1709 + 0 1708 18458 168 2 1 72 24 25 72 0 43 83 6 7 177 0 278 12 1 0 134 1 48 104 11 4 15 5 4 13 0 2 253 9 3 23 1 0 86 1 0 81 chain 55603 chr17 83257441 + 68281876 68282506 L1PA5 6144 + 5509 6144 27687 382 2 1 140 1 0 94 0 7 11 chain 38181 chr17 83257441 + 68325042 68325539 MER1A 529 + 0 506 35923 25 1 6 49 8 12 414 chain 4030 chr17 83257441 + 68353141 68353214 MADE1 96 - 0 96 91242 30 10 33 33 chain 5432 chr17 83257441 + 68386987 68387067 MADE1 96 + 0 96 83544 44 3 19 33 chain 12933 chr17 83257441 + 68394160 68394318 MER44C 733 + 481 639 65199 158 chain 40885 chr17 83257441 + 68503658 68504181 L1MA3 4352 + 3347 3871 34036 511 0 1 12 chain 3359 chr17 83257441 + 68506063 68506105 MER58B 340 + 203 245 96492 42 chain 31002 chr17 83257441 + 68591578 68592011 MER61B 427 + 0 427 41120 114 32 26 17 2 1 33 0 1 235 chain 22167 chr17 83257441 + 68620273 68620565 THE1C 375 + 0 315 53613 80 5 6 56 0 4 49 0 18 102 chain 46662 chr17 83257441 + 68638724 68639277 MER41A 554 + 0 553 30788 553 chain 5970 chr17 83257441 + 68649984 68650108 MLT1B 390 + 282 390 81188 30 28 11 43 5 6 18 chain 196949 chr17 83257441 + 68654228 68656372 L1PA3long 6157 + 4002 6147 9814 1328 0 1 816 chain 25020 chr17 83257441 + 68680818 68681118 AluYk4 311 + 0 296 49245 132 14 10 154 chain 27119 chr17 83257441 + 68726733 68727084 L1PREC2 3366 + 1988 2322 46098 47 20 3 284 chain 4234 chr17 83257441 + 68736610 68736660 L1MDa 1598 + 1122 1172 89916 50 chain 23520 chr17 83257441 + 68771623 68771870 AluYg6 310 + 43 290 51554 247 chain 39236 chr17 83257441 + 68773284 68773782 L1PA8 5853 + 5364 5853 35186 29 0 1 170 1 0 44 2 0 74 1 0 23 4 0 35 2 1 19 1 0 93 chain 254652 chr17 83257441 + 68843900 68847055 L1PA8 5853 + 2692 5853 8122 214 1 2 399 11 16 1225 0 1 343 0 3 111 0 1 65 0 1 447 0 1 39 16 15 33 2 0 62 28 26 42 4 3 19 3 2 91 chain 4223 chr17 83257441 + 68856847 68856898 Tigger1 2417 + 369 420 89987 51 chain 50536 chr17 83257441 + 68872030 68872587 L1PA2 6032 + 5468 6029 29370 348 0 3 41 0 1 168 chain 2998 chr17 83257441 + 68880213 68880249 MER52A 1651 + 957 993 99859 36 chain 5799 chr17 83257441 + 68916377 68916509 L1MA3 4352 + 4207 4332 81923 28 4 0 25 2 0 5 21 23 29 2 0 11 1 0 4 chain 4901 chr17 83257441 + 68943874 68943933 L1PA8 5853 + 5415 5474 86145 59 chain 27632 chr17 83257441 + 68943934 68944316 L1PA8 5853 + 5474 5849 45416 90 1 0 45 2 0 69 25 23 39 2 1 19 1 0 89 chain 192741 chr17 83257441 + 68978752 68980924 L1PA4 6152 + 3954 6152 9983 402 0 4 1457 0 1 63 6 26 238 0 1 6 chain 342593 chr17 83257441 + 69036418 69040717 L1PA8 5853 + 1579 5850 6015 312 20 6 121 19 0 62 1 0 802 2 0 302 0 1 570 5 6 295 4 8 447 0 8 249 14 15 224 6 5 45 1 0 389 0 1 56 0 1 60 2 1 43 2 0 70 37 35 27 2 1 19 2 1 89 chain 27483 chr17 83257441 + 69065738 69066099 THE1C 375 + 7 365 45602 16 4 3 164 1 0 159 1 0 16 chain 288308 chr17 83257441 + 69070298 69073774 L1P3 4156 + 3 3479 7186 224 0 1 23 1 0 68 2 1 80 2 0 7 1 4 48 0 1 1886 7 5 135 1 0 66 2 4 29 3 0 47 1 3 347 6 5 306 0 2 184 chain 4068 chr17 83257441 + 69095507 69095587 MADE1 96 - 1 96 90961 29 20 35 31 chain 25909 chr17 83257441 + 69111375 69111741 THE1C 375 + 2 375 47847 101 5 7 25 0 4 45 19 18 145 0 2 26 chain 67522 chr17 83257441 + 69113803 69114564 L1PA4 6152 + 5380 6143 24560 344 1 2 84 1 0 316 0 2 15 chain 22062 chr17 83257441 + 69122931 69123173 L1PA4 6152 + 5909 6151 53746 242 chain 150151 chr17 83257441 + 69138462 69140107 L1PA3long 6157 + 4512 6157 12338 1645 chain 9414 chr17 83257441 + 69184429 69184541 L1PBa 3878 + 220 330 71667 17 2 0 93 chain 16040 chr17 83257441 + 69184950 69185279 L1PB1 5432 + 5115 5414 60973 23 1 0 8 1 0 10 7 3 9 3 1 24 1 0 27 2 1 15 1 0 45 1 0 21 16 6 18 10 7 13 2 0 24 1 0 22 1 0 12 1 0 10 chain 4851 chr17 83257441 + 69236760 69236907 MER20 218 + 41 198 86421 29 11 20 28 52 53 27 chain 9129 chr17 83257441 + 69266474 69266572 L1PA2 6032 + 5926 6024 72283 98 chain 206181 chr17 83257441 + 69278752 69281042 L1PA3long 6157 + 3861 6157 9496 493 0 4 1625 8 10 164 chain 64516 chr17 83257441 + 69298568 69299838 L1PB1 5432 + 4190 5422 25308 19 1 0 176 0 19 59 0 4 51 3 5 34 13 12 27 9 13 18 3 0 39 10 13 24 0 2 220 14 15 69 34 30 25 135 95 9 2 0 51 1 0 17 1 0 45 1 0 4 109 92 14 1 0 13 1 0 18 chain 15164 chr17 83257441 + 69468669 69468855 MER107 203 + 0 181 62080 155 5 0 26 chain 21913 chr17 83257441 + 69599469 69599835 THE1D 372 + 0 372 53956 56 9 0 50 0 1 81 9 6 7 2 0 9 14 16 12 5 17 23 0 2 5 1 0 3 1 0 12 0 5 67 chain 20185 chr17 83257441 + 69620104 69620350 AluSc 308 + 57 301 56159 236 2 0 8 chain 35429 chr17 83257441 + 69631177 69631621 MLT2A1 477 + 0 477 37764 14 0 2 152 5 2 213 0 34 60 chain 71502 chr17 83257441 + 69632816 69633975 L1PA5 6144 + 5003 6144 23654 219 17 0 669 1 0 253 chain 12437 chr17 83257441 + 69642156 69642311 L1PA7 6471 + 6312 6467 66087 155 chain 15193 chr17 83257441 + 69644011 69644202 MER107 203 + 18 203 62049 152 7 1 32 chain 18768 chr17 83257441 + 69647549 69647926 THE1D 372 + 15 370 57823 26 0 2 11 9 0 46 2 3 85 8 6 12 37 39 29 26 11 32 1 2 20 2 0 31 chain 6474 chr17 83257441 + 69659400 69659515 Tigger2 2703 + 2358 2486 79427 8 3 0 32 20 36 52 chain 85757 chr17 83257441 + 69681638 69682589 L1PA3long 6157 + 5202 6157 20492 108 0 4 509 0 1 259 1 0 74 chain 40645 chr17 83257441 + 69750809 69751282 L1PA7 6471 + 5971 6445 34190 167 0 1 306 chain 3879 chr17 83257441 + 69799534 69799580 MLT1B 390 + 54 100 92296 46 chain 38060 chr17 83257441 + 69817633 69818048 L1PA3long 6157 + 5737 6152 36026 415 chain 31556 chr17 83257441 + 69837732 69838201 L1MA8 2339 + 650 1076 40698 61 39 0 91 5 0 150 6 7 117 chain 21606 chr17 83257441 + 69847625 69848104 L1PB1 5432 + 4984 5427 54346 26 7 6 83 9 8 7 1 0 24 27 21 8 2 0 50 21 19 44 1 0 16 1 0 4 19 8 19 2 0 5 1 0 7 0 3 5 6 1 16 7 6 21 1 0 13 1 0 18 2 0 5 chain 3801 chr17 83257441 + 69852991 69853036 Tigger3c 601 + 320 365 92840 45 chain 56436 chr17 83257441 + 69861808 69862879 MER4E1 777 + 3 769 27442 212 1 6 106 9 32 54 317 10 10 0 1 37 0 1 64 4 0 4 17 0 6 7 0 223 chain 27037 chr17 83257441 + 69866339 69866768 MER4A1 472 + 0 472 46218 21 0 1 11 1 0 4 0 17 87 5 6 73 56 82 30 1 0 140 chain 24869 chr17 83257441 + 69869271 69869617 L1PA8 5853 + 5506 5853 49493 17 0 8 33 1 0 44 2 0 74 21 19 42 1 0 17 1 0 93 chain 87277 chr17 83257441 + 69924873 69925829 L1PA3long 6157 + 3513 4470 20177 672 0 1 284 chain 16253 chr17 83257441 + 69936366 69936648 THE1B 368 + 0 283 60678 13 6 7 84 9 0 65 1 0 29 36 46 39 chain 14607 chr17 83257441 + 69955213 69955397 L1PB4 2604 + 2139 2341 62790 116 0 18 68 chain 21440 chr17 83257441 + 69956403 69956737 THE1B 368 + 0 332 54594 169 1 0 29 45 55 47 11 0 32 chain 50688 chr17 83257441 + 69987243 69987916 THE1B-int 1605 + 924 1600 29317 39 0 1 50 1 0 4 0 5 277 23 20 11 5 6 263 chain 16131 chr17 83257441 + 70118211 70118422 L1PA7 6471 + 6199 6470 60849 9 0 63 187 2 0 8 1 0 4 chain 28358 chr17 83257441 + 70154106 70154406 AluY 311 + 7 308 44332 125 0 1 175 chain 19267 chr17 83257441 + 70235895 70236215 MLT2A1 477 + 10 285 57273 23 0 2 62 37 0 74 3 0 8 0 1 24 0 1 22 13 4 54 chain 42994 chr17 83257441 + 70281956 70282449 MER9a3 513 + 0 513 32776 269 0 18 128 0 2 96 chain 48071 chr17 83257441 + 70331018 70331579 L1PA7 6471 + 5909 6469 30271 549 1 0 11 chain 16211 chr17 83257441 + 70348720 70348923 MER107 203 + 0 203 60727 203 chain 25107 chr17 83257441 + 70389280 70389935 THE1A 353 + 0 342 49104 111 1 0 93 333 21 117 chain 21116 chr17 83257441 + 70399610 70399922 THE1C-int 1605 + 1252 1585 54992 31 20 38 133 7 8 114 0 2 7 chain 568686 chr17 83257441 + 70458956 70464987 L1HS 6032 + 0 6032 3 74 0 1 5957 chain 22626 chr17 83257441 + 70525228 70525534 AluSp 311 + 10 307 52947 115 2 0 7 4 0 64 6 3 108 chain 42367 chr17 83257441 + 70542011 70542565 MER41A 554 + 0 554 33151 92 0 1 11 5 6 381 3 0 20 0 1 42 chain 28315 chr17 83257441 + 70576556 70576909 THE1A 353 + 0 353 44388 47 0 1 48 1 0 257 chain 10587 chr17 83257441 + 70699237 70699374 L1PA8 5853 + 5717 5853 69251 23 2 1 112 chain 43938 chr17 83257441 + 70703647 70704299 LTR12_ 688 + 0 688 32169 333 22 24 14 5 12 36 0 1 28 12 6 45 18 17 32 0 33 107 chain 42018 chr17 83257441 + 70718453 70718983 MLT2A2 560 + 11 554 33348 164 1 0 184 0 1 42 0 11 76 1 2 7 0 1 55 chain 45511 chr17 83257441 + 70799678 70800197 L1PA6 6164 + 5637 6156 31301 519 chain 7319 chr17 83257441 + 70912655 70912753 MER30 238 + 140 238 76603 12 0 6 8 6 0 72 chain 3546 chr17 83257441 + 70913324 70913366 MER53 195 - 135 177 94884 42 chain 370782 chr17 83257441 + 70948466 70953685 L1PB1 5432 + 19 5428 5635 27 88 60 23 0 2 147 1 0 103 0 332 232 5 3 68 0 1 378 1 0 7 7 0 11 14 5 127 0 4 47 0 6 45 8 9 409 7 8 422 9 1 130 0 1 192 1 0 6 0 1 8 2 0 55 23 20 824 32 10 320 5 0 43 0 12 333 3 0 76 0 2 26 44 12 60 3 0 177 0 2 9 11 0 193 0 1 5 37 39 50 17 11 24 2 0 9 16 11 11 3 1 50 2 1 16 1 0 39 5 4 16 1 0 4 63 47 23 1 0 21 1 0 13 1 0 16 1 0 4 1 0 4 chain 27458 chr17 83257441 + 70992694 70993065 THE1C 375 + 0 374 45627 142 6 10 31 11 11 156 1 0 24 chain 43779 chr17 83257441 + 71031278 71031825 L1PA8 5853 + 5312 5853 32270 252 1 0 44 2 0 70 2 1 9 1 0 18 0 1 33 2 1 19 1 0 93 chain 140373 chr17 83257441 + 71093859 71095563 L1PA7 6471 + 4771 6466 13070 54 5 0 272 22 0 523 2 1 90 6 7 198 0 6 304 0 12 26 0 1 16 1 0 185 chain 18319 chr17 83257441 + 71103255 71103472 L1PA7 6471 + 6246 6458 58340 126 5 0 86 chain 34038 chr17 83257441 + 71127957 71128332 L1PA4 6152 + 5768 6144 38677 233 0 1 142 chain 64158 chr17 83257441 + 71205763 71206463 L1PA3long 6157 + 5457 6157 25380 700 chain 27649 chr17 83257441 + 71231264 71231633 THE1C 375 + 1 375 45396 182 1 0 11 7 10 20 0 3 51 0 1 71 1 0 25 chain 117038 chr17 83257441 + 71304859 71306539 L1PBa 3878 + 129 1734 16048 14 72 24 45 1 0 23 2 0 289 1 0 496 1 30 396 0 2 46 0 1 71 0 3 51 37 0 5 19 0 40 9 7 62 chain 172157 chr17 83257441 + 71306547 71311135 L1PB1 5432 + 865 5422 10990 80 29 579 18 3 7 191 16 17 58 0 1 204 1 0 474 10 0 6 2 1 80 1 10 4 1 0 14 8 5 6 0 5 195 321 14 110 1 0 63 8 0 143 1 14 47 3 0 87 3 14 44 2 0 65 0 1 65 1 0 52 0 3 174 1678 1402 20 1 0 6 1 0 13 6 2 9 2 0 50 2 3 15 0 1 44 1 0 15 3 0 13 0 3 15 2 0 5 15 12 22 29 27 11 1 0 18 chain 20077 chr17 83257441 + 71310519 71310758 L1PA6 6164 + 5923 6162 56282 239 chain 29723 chr17 83257441 + 71450809 71451221 L1PA8 5853 + 5445 5853 42340 76 0 3 40 1 0 45 3 1 69 1 0 12 1 0 48 6 5 10 8 7 92 chain 21902 chr17 83257441 + 71479300 71479595 L1PA8 5853 + 5564 5853 53963 44 2 0 70 2 1 9 1 0 51 3 2 21 1 0 91 chain 28013 chr17 83257441 + 71520145 71520486 L1PA6 6164 + 5824 6162 44845 330 3 0 8 chain 58644 chr17 83257441 + 71619071 71619802 THE1B-int 1605 + 870 1605 26776 138 0 1 49 0 2 525 3 4 16 chain 20186 chr17 83257441 + 71619810 71620157 THE1B 368 + 8 348 56156 36 7 8 42 1 0 17 13 14 44 35 28 96 1 0 55 chain 21379 chr17 83257441 + 71643621 71643907 L1PA10 4194 + 394 679 54666 9 1 0 85 4 2 21 0 1 93 1 2 72 chain 3464 chr17 83257441 + 71677787 71677839 MER3 215 + 168 215 95502 6 5 0 41 chain 48584 chr17 83257441 + 71701078 71701621 L1PA2 6032 + 5489 6031 30090 295 0 1 234 2 0 12 chain 20510 chr17 83257441 + 71773811 71774116 THE1B 368 + 0 307 55773 169 1 0 6 24 25 10 0 4 16 1 0 11 1 0 66 chain 13447 chr17 83257441 + 71786729 71786929 MER107 203 + 0 202 64393 38 0 6 68 12 11 48 3 0 31 chain 4236 chr17 83257441 + 71832234 71832291 MER20 218 + 3 62 89907 11 1 3 45 chain 39530 chr17 83257441 + 71856889 71857347 L1PA5 6144 + 5686 6144 34996 458 chain 42466 chr17 83257441 + 71874449 71875089 L1MA2 4263 + 3499 4114 33084 75 2 0 10 9 5 73 1 0 4 2 1 142 3 0 145 23 21 83 7 0 17 5 1 28 1 0 10 chain 56733 chr17 83257441 + 71915959 71916711 MER4E1 777 + 19 770 27346 328 6 5 186 30 29 47 0 1 155 chain 21542 chr17 83257441 + 71924542 71924827 AluY 311 + 8 296 54446 118 17 18 131 5 7 14 chain 31175 chr17 83257441 + 71928010 71928401 MLT2A1 477 + 0 385 41001 169 4 1 12 2 0 23 1 0 180 chain 121736 chr17 83257441 + 71944262 71945828 THE1B-int 1605 + 0 1597 15222 108 0 1 4 0 3 245 7 6 59 0 25 169 0 1 389 9 13 359 2 0 84 0 1 4 1 0 126 chain 28195 chr17 83257441 + 71949824 71950176 MER4A1 472 + 96 447 44573 109 1 0 242 chain 3421 chr17 83257441 + 71960881 71960921 MER58D 378 + 323 363 95896 40 chain 22095 chr17 83257441 + 71971539 71971916 THE1B 368 + 0 368 53708 17 2 0 30 0 1 14 1 0 49 5 6 52 39 32 72 21 20 75 chain 5560 chr17 83257441 + 71997030 71997100 L1MA3 4352 + 3976 4046 82987 70 chain 40195 chr17 83257441 + 72014350 72014826 L1PA6 6164 + 5685 6160 34521 462 1 0 13 chain 32352 chr17 83257441 + 72051983 72052367 L1PA6 6164 + 5778 6162 40076 384 chain 58943 chr17 83257441 + 72078386 72079052 L1PA5 6144 + 5473 6140 26681 337 0 1 329 chain 3385 chr17 83257441 + 72230769 72230937 MER58A 224 + 45 210 96229 28 92 93 14 10 6 24 chain 19614 chr17 83257441 + 72254474 72254849 MSTA 426 + 0 420 56893 108 20 48 50 4 0 6 8 0 7 20 30 50 33 52 69 chain 24599 chr17 83257441 + 72275904 72276255 THE1B 368 + 4 368 49870 9 2 0 24 3 8 36 15 19 28 0 8 32 2 0 200 chain 6787 chr17 83257441 + 72285456 72285540 L1MC4 1079 + 50 133 78361 18 1 0 65 chain 3740 chr17 83257441 + 72294108 72294153 MADE1 96 + 50 96 93329 29 0 1 16 chain 38492 chr17 83257441 + 72356775 72357285 MLT2A2 560 + 0 548 35715 180 1 0 128 6 38 16 4 0 40 0 11 135 chain 37912 chr17 83257441 + 72370265 72370726 L1PA8 5853 + 5398 5853 36129 166 1 0 45 2 0 70 1 0 61 2 1 19 1 0 93 chain 8833 chr17 83257441 + 72406496 72406616 MER21A 919 + 25 177 72912 56 0 23 19 0 10 23 1 0 21 chain 3641 chr17 83257441 + 72408678 72408723 MLT1D 503 + 415 460 94092 45 chain 27255 chr17 83257441 + 72439522 72439874 THE1A 353 + 0 353 45888 119 6 7 227 chain 47451 chr17 83257441 + 72472960 72474288 L1PB1 5432 + 4703 5420 30487 397 583 5 9 5 0 24 1 0 9 1 0 9 8 5 6 2 0 53 2 1 15 1 0 44 1 0 15 25 13 19 2 0 5 1 0 14 2 0 7 6 8 9 1 0 21 1 0 13 1 0 16 chain 55785 chr17 83257441 + 72543895 72545793 L1PA3long 6157 + 4286 6156 27634 853 28 0 1017 chain 8395 chr17 83257441 + 72572533 72572663 MER85 139 + 0 139 73914 93 1 11 12 7 6 17 chain 25915 chr17 83257441 + 72582265 72582629 THE1B 368 + 0 368 47838 169 6 5 27 8 13 92 1 0 4 1 2 56 chain 53764 chr17 83257441 + 72637971 72638728 LTR17 781 + 0 755 28297 59 1 0 102 1 0 17 4 3 101 0 1 44 1 0 171 42 42 163 25 26 26 chain 24360 chr17 83257441 + 72680327 72680690 THE1B 368 + 0 368 50235 169 1 0 15 22 30 10 7 6 9 2 1 128 chain 9159 chr17 83257441 + 72682372 72682488 Tigger2a 444 + 263 384 72214 17 0 5 99 chain 27990 chr17 83257441 + 72753805 72754443 L1PB1 5432 + 4909 5430 44885 72 0 3 18 32 21 80 3 0 9 78 3 23 1 0 9 1 0 9 2 0 3 2 0 8 2 0 53 2 1 15 1 0 44 1 0 22 16 6 19 2 0 5 1 0 14 7 5 7 0 1 6 2 1 4 1 0 21 1 0 13 9 8 10 2 0 8 chain 50420 chr17 83257441 + 72762082 72762715 MER41B 635 + 1 635 29406 92 1 0 32 1 2 428 0 1 79 chain 6270 chr17 83257441 + 72769342 72769415 L1MB3 1562 + 1230 1303 80090 73 chain 25661 chr17 83257441 + 72769838 72770178 MER4A1 472 + 129 472 48229 88 1 0 4 3 5 174 1 3 69 chain 4472 chr17 83257441 + 72782348 72782400 MLT1C 463 + 374 426 88484 52 chain 77432 chr17 83257441 + 72799099 72800118 MER11A 1151 + 0 1151 22212 55 0 99 76 2 1 63 4 0 146 5 6 92 0 1 145 3 6 120 0 26 26 16 21 37 0 1 56 10 11 163 chain 20329 chr17 83257441 + 72911191 72911416 L1PA4 6152 + 5916 6141 55973 225 chain 10135 chr17 83257441 + 72940851 72940989 MLT1B 390 + 34 173 70134 43 2 3 93 chain 34066 chr17 83257441 + 72943810 72944267 LTR45B 484 + 11 472 38659 71 4 11 69 1 2 147 1 2 82 5 0 77 chain 55240 chr17 83257441 + 72958005 72959704 L1PB1 5432 + 4106 5420 27796 219 17 22 128 0 9 125 11 12 63 851 474 11 2 0 51 2 1 12 5 4 44 2 1 14 3 0 12 9 0 19 9 8 11 2 0 24 1 0 21 1 0 13 1 0 16 chain 60083 chr17 83257441 + 72961197 72961895 L1PA6 6164 + 5460 6162 26349 32 0 1 12 0 1 79 0 1 32 0 1 543 chain 52259 chr17 83257441 + 72964655 72965261 L1PA5 6144 + 5537 6144 28799 430 0 4 64 1 0 97 3 1 11 chain 19565 chr17 83257441 + 73001367 73001573 L1PA3long 6157 + 5951 6157 56939 206 chain 22664 chr17 83257441 + 73070607 73070958 THE1B 368 + 0 368 52872 138 0 4 27 1 0 29 8 6 10 23 35 48 4 8 63 chain 142337 chr17 83257441 + 73079486 73082105 L1PB1 5432 + 3304 5423 12906 218 4 5 198 10 9 49 0 13 9 1 0 400 0 2 266 0 2 21 362 25 107 3 0 134 7 8 137 8 6 190 1 2 10 224 63 42 19 19 12 0 12 18 1 0 11 36 20 14 9 6 14 2 0 24 1 0 23 4 3 8 1 0 14 2 0 5 chain 6842 chr17 83257441 + 73086358 73086448 L1MB3 1562 + 1191 1284 78165 7 0 3 83 chain 21078 chr17 83257441 + 73097931 73099387 LTR8 732 + 40 729 55030 100 0 5 11 7 6 53 12 8 43 1126 359 104 chain 22026 chr17 83257441 + 73106310 73106576 AluSp 311 + 30 304 53798 139 0 1 104 0 7 23 chain 7104 chr17 83257441 + 73113925 73114018 MSTC 436 + 0 97 77251 16 0 4 77 chain 30124 chr17 83257441 + 73176308 73176682 THE1C 375 + 0 375 41920 185 1 0 28 0 3 134 1 0 25 chain 26728 chr17 83257441 + 73296700 73297004 AluYk4 311 + 0 305 46645 118 0 1 186 chain 5515 chr17 83257441 + 73315799 73315880 MADE1 96 + 0 95 83174 29 0 16 39 2 0 11 chain 24968 chr17 83257441 + 73472711 73473053 THE1B 368 + 20 366 49332 17 1 6 20 0 1 55 0 1 49 8 7 16 2 0 174 chain 3097 chr17 83257441 + 73539713 73539748 MLT1C 463 + 88 123 98812 35 chain 38977 chr17 83257441 + 73632145 73632694 MLT2A2 560 + 0 560 35371 244 12 11 154 0 11 40 27 28 72 chain 3869 chr17 83257441 + 73714144 73714190 Charlie4z 170 + 95 141 92361 46 chain 356825 chr17 83257441 + 73807437 73811369 L1PA4 6152 + 2218 6151 5839 889 0 1 3043 chain 37899 chr17 83257441 + 73859319 73859823 MER41B 635 + 0 509 36140 73 10 15 4 1 0 35 1 2 380 chain 21374 chr17 83257441 + 73919058 73919390 THE1B 368 + 0 367 54674 44 5 20 54 6 17 37 1 0 28 0 2 97 1 0 7 15 24 37 chain 5542 chr17 83257441 + 73924393 73924462 MLT1B 390 + 24 93 83067 69 chain 25938 chr17 83257441 + 73931174 73931507 THE1C 375 + 3 335 47807 170 4 5 8 2 0 149 chain 27908 chr17 83257441 + 73936204 73936512 AluYg6 310 + 0 301 45019 118 7 0 183 chain 45120 chr17 83257441 + 73974627 73975870 PABL_A 660 + 0 660 31516 10 0 1 73 5 14 149 24 68 42 1 0 79 636 0 224 chain 42959 chr17 83257441 + 73978042 73978592 MER41A 554 + 0 554 32797 104 0 1 80 5 4 216 0 4 67 1 0 30 0 1 47 chain 2958 chr17 83257441 + 74264883 74264921 MER58D 378 + 187 224 100299 14 1 0 23 chain 35361 chr17 83257441 + 74267019 74267555 LTR12F 595 + 0 531 37793 103 1 2 40 2 0 20 12 20 25 14 5 103 1 0 75 12 10 42 0 1 4 15 14 67 chain 3896 chr17 83257441 + 74307722 74307786 MER53 195 + 75 142 92162 31 6 8 16 0 1 11 chain 4510 chr17 83257441 + 74346705 74346757 MER53 195 + 143 195 88265 52 chain 29413 chr17 83257441 + 74399548 74399929 THE1C 375 + 0 375 42716 20 2 0 100 3 0 60 0 1 4 1 0 164 1 0 26 chain 104640 chr17 83257441 + 74503269 74504607 HERVH-int 3825 + 2077 3825 17735 15 0 5 238 8 9 332 0 1 6 9 8 128 5 372 52 5 41 170 0 1 370 chain 27406 chr17 83257441 + 74506033 74506420 LTR7B 505 + 0 505 45693 108 0 10 53 18 86 51 4 45 84 18 17 51 chain 26506 chr17 83257441 + 74518610 74518972 THE1B 368 + 6 368 46973 7 2 0 24 1 6 71 0 1 5 2 1 48 1 0 23 2 0 176 chain 6741 chr17 83257441 + 74519880 74519991 L1MB1 2102 + 1892 1996 78508 12 5 0 33 7 5 54 chain 6465 chr17 83257441 + 74533826 74533950 HUERS-P3-int 2218 + 82 194 79468 27 1 0 20 5 2 8 1 0 4 3 0 21 1 0 19 4 1 10 chain 31786 chr17 83257441 + 74558498 74558934 LTR2 463 + 0 463 40510 130 0 4 28 8 29 140 0 1 19 23 24 88 chain 6671 chr17 83257441 + 74566069 74566171 MER20 218 + 61 161 78730 19 13 11 70 chain 18680 chr17 83257441 + 74590011 74590374 THE1B 368 + 0 368 57919 107 15 17 45 70 74 63 16 15 47 chain 24557 chr17 83257441 + 74668166 74668645 MER4A1 472 + 0 472 49935 13 1 0 197 86 76 42 40 43 24 18 19 58 chain 3038 chr17 83257441 + 74718364 74718396 MLT1A0 366 + 318 350 99444 32 chain 7564 chr17 83257441 + 74908769 74908853 LTR12C 1709 + 1625 1709 75951 84 chain 61198 chr17 83257441 + 74913551 74914446 LTR12C 1709 + 773 1700 26063 64 1 0 201 0 88 89 44 13 51 16 17 185 34 11 49 1 0 77 8 7 75 chain 21667 chr17 83257441 + 74994826 74995085 AluSc 308 + 38 295 54268 185 2 0 72 chain 28324 chr17 83257441 + 75022575 75022913 LTR14A 344 + 0 344 44375 130 0 2 39 0 4 169 chain 129117 chr17 83257441 + 75023484 75025791 HERVK14-int 1672 + 5 1655 14131 25 1 0 11 1 0 48 1 0 91 0 1 125 1 0 8 0 5 15 2 0 232 1 0 24 0 1 22 1 0 206 1 0 66 1 0 97 1 0 79 7 5 6 2 0 33 1 0 13 0 2 192 1 0 104 1 0 62 2 1 20 4 11 94 654 0 51 chain 45404 chr17 83257441 + 75025087 75025740 LTR12_ 688 + 1 688 31363 63 0 1 12 5 71 15 40 0 90 0 1 81 5 7 115 0 1 20 7 11 24 1 0 175 chain 30265 chr17 83257441 + 75030176 75030520 LTR14A 344 + 0 344 41794 344 chain 6044 chr17 83257441 + 75033905 75033970 tRNA-Arg-AGG 67 + 0 65 80912 65 chain 6637 chr17 83257441 + 75035112 75035185 tRNA-Arg-CGG 73 + 0 73 78854 73 chain 16171 chr17 83257441 + 75041748 75041951 7SLRNA 320 + 9 232 60787 15 0 20 188 chain 24714 chr17 83257441 + 75085016 75085306 AluSc 308 + 11 301 49704 290 chain 3588 chr17 83257441 + 75112389 75112432 FAM 185 + 97 140 94526 43 chain 23823 chr17 83257441 + 75178244 75178535 AluSc 308 + 11 305 51064 246 1 0 14 0 4 30 chain 28447 chr17 83257441 + 75252620 75253051 LTR7B 505 + 0 503 44197 108 0 10 57 0 38 12 3 27 18 8 10 38 1 2 45 1 0 23 4 3 50 14 13 49 chain 292500 chr17 83257441 + 75253053 75256607 HERVH-int 3825 + 0 3825 7056 212 0 11 309 5 0 38 1 0 10 1 0 24 1 14 13 3 41 25 1 0 26 0 1 5 1 0 50 1 0 59 0 3 229 13 14 102 4 8 35 15 0 8 0 1 203 0 1 463 0 1 94 0 4 404 1 4 36 2 0 313 0 1 308 9 11 39 7 218 88 23 23 74 0 1 74 0 2 225 chain 29100 chr17 83257441 + 75257854 75258281 LTR7B 505 + 0 503 43186 10 0 2 93 0 10 60 0 38 12 3 27 18 8 10 38 1 2 45 1 0 23 0 1 52 14 13 49 chain 4502 chr17 83257441 + 75350093 75350197 FAM 185 + 10 126 88310 27 38 50 39 chain 23018 chr17 83257441 + 75440001 75440603 MER75 514 + 200 494 52333 67 0 1 148 309 0 78 chain 5786 chr17 83257441 + 75453870 75453938 MER30B 195 + 113 181 81991 68 chain 57835 chr17 83257441 + 75580824 75581711 LTR12C 1709 + 492 1709 27012 17 19 35 106 0 278 181 16 9 28 15 14 57 18 11 32 0 2 36 12 23 10 3 0 8 0 2 169 0 4 67 12 44 43 0 3 38 chain 4647 chr17 83257441 + 75749545 75749602 MER53 195 + 138 195 87541 57 chain 3484 chr17 83257441 + 75767910 75767947 L1MB8 1703 + 978 1015 95353 37 chain 8600 chr17 83257441 + 75799858 75799983 BC200 147 + 16 137 73454 24 0 1 81 2 0 8 3 0 7 chain 18952 chr17 83257441 + 75885930 75886240 THE1B 368 + 0 309 57594 169 1 0 21 60 60 59 chain 5280 chr17 83257441 + 76052447 76052522 L1PA8 5853 + 5688 5762 84282 50 4 3 21 chain 9703 chr17 83257441 + 76114902 76115055 L1MA3 4352 + 4200 4352 71042 35 4 0 23 2 0 22 0 10 23 1 0 15 6 2 22 chain 7582 chr17 83257441 + 76165038 76165196 MER44A 345 + 191 345 75905 43 55 51 60 chain 14303 chr17 83257441 + 76209385 76209606 MER30 238 + 0 238 63192 15 0 18 11 5 0 63 3 13 65 3 0 14 3 0 39 chain 6154 chr17 83257441 + 76236030 76236122 MLT2C1 407 + 103 199 80528 63 4 7 7 0 1 18 chain 13198 chr17 83257441 + 76325482 76326017 Tigger1 2417 + 2077 2313 64785 17 1 0 70 345 43 43 1 0 43 0 5 15 chain 9167 chr17 83257441 + 76337315 76337419 U6 107 + 0 104 72190 104 chain 28830 chr17 83257441 + 76357114 76357552 MER51B 395 + 0 395 43581 31 21 8 77 37 7 122 1 0 5 5 6 139 chain 19914 chr17 83257441 + 76363202 76363462 MER51B 395 + 0 278 56500 149 0 1 71 0 17 7 1 0 9 6 7 17 chain 24106 chr17 83257441 + 76560703 76560993 AluSp 311 + 4 293 50634 165 1 0 124 chain 29195 chr17 83257441 + 76562298 76562611 AluYb8 318 + 0 312 43053 132 1 0 180 chain 59096 chr17 83257441 + 76636621 76637285 SVA_B 1603 + 896 1603 26639 36 13 55 39 0 1 576 chain 33197 chr17 83257441 + 76640865 76641343 LTR15 485 + 0 475 39356 58 2 1 65 4 0 25 0 2 27 0 2 5 2 0 96 0 4 110 3 2 40 8 4 14 4 5 15 chain 8099 chr17 83257441 + 76656321 76656418 U6 107 + 6 103 74640 97 chain 6072 chr17 83257441 + 76747081 76747178 Tigger1 2417 + 1444 1545 80831 65 11 15 21 chain 8395 chr17 83257441 + 76752911 76753013 U6 107 + 0 105 73912 44 0 3 58 chain 8928 chr17 83257441 + 76795065 76795197 MER2 342 + 58 199 72723 6 0 2 13 0 4 36 5 8 72 chain 2011 chr17 83257441 + 76806581 76806649 LTR12C 1709 + 769 837 68042 68 chain 11967 chr17 83257441 + 76806741 76806969 LTR12C 1709 + 650 837 66888 33 72 31 123 chain 1528 chr17 83257441 + 76806779 76806810 LTR12C 1709 + 729 760 85544 31 chain 917 chr17 83257441 + 76806810 76806841 LTR12C 1709 + 878 909 68042 31 chain 5143 chr17 83257441 + 76847295 76847438 L1MB5 1630 + 1207 1353 84943 59 64 67 20 chain 3547 chr17 83257441 + 76888810 76888847 tRNA-Gly-GGA 38 + 0 37 94880 37 chain 35276 chr17 83257441 + 76970285 76970780 LTR10F 562 + 0 551 37844 112 4 32 18 5 33 33 0 3 25 7 0 10 9 15 130 1 0 94 1 0 46 chain 27677 chr17 83257441 + 76978058 76978423 THE1B 368 + 0 368 45357 15 2 0 22 0 5 126 1 0 23 2 0 7 0 4 28 1 0 12 1 0 85 0 1 40 chain 12992 chr17 83257441 + 76990738 76990937 MSTA 426 + 0 198 65122 96 8 9 43 9 7 43 chain 25774 chr17 83257441 + 77067027 77067339 MER4E1 777 + 13 331 48063 4 0 1 22 0 4 14 0 1 272 chain 38542 chr17 83257441 + 77111457 77111941 THE1C-int 1605 + 1127 1605 35678 38 9 2 111 0 1 326 chain 5366 chr17 83257441 + 77154113 77154179 MER2 342 + 146 212 83869 66 chain 21885 chr17 83257441 + 77258703 77259034 THE1D 372 + 0 313 53992 19 1 3 26 0 1 26 19 0 29 0 1 18 9 5 47 1 0 6 0 3 9 1 0 120 chain 22512 chr17 83257441 + 77291366 77291638 AluSp 311 + 1 288 53106 50 0 15 222 chain 6012 chr17 83257441 + 77442108 77442178 HY1 111 + 0 70 81028 70 chain 7312 chr17 83257441 + 77464377 77464483 MER75 514 + 386 491 76626 23 9 8 74 chain 44757 chr17 83257441 + 77521712 77523102 MER4A1_ 611 + 0 611 31717 70 5 4 46 315 9 220 0 8 69 480 0 185 chain 24395 chr17 83257441 + 77534153 77534486 THE1B 368 + 0 356 50177 44 0 15 113 1 0 35 1 2 97 5 13 37 chain 39427 chr17 83257441 + 77616473 77617316 MER41A 554 + 0 533 35056 92 0 1 92 5 4 237 0 3 8 313 1 70 4 3 22 chain 4168 chr17 83257441 + 77673932 77673986 MLT2B3 573 + 517 570 90332 7 1 0 46 chain 4347 chr17 83257441 + 77706478 77706531 THE1B 368 + 5 58 89196 53 chain 5646 chr17 83257441 + 77773439 77773522 Tigger2a 444 + 125 212 82580 61 6 10 16 chain 167162 chr17 83257441 + 77775692 77777660 SVA_E 1901 + 0 1901 11260 145 3 0 335 0 40 297 1 0 25 0 1 80 0 46 5 1 0 121 1 0 5 147 0 793 1 0 8 chain 6687 chr17 83257441 + 77776711 77776816 SVA_E 1901 + 1227 1283 38931 32 49 0 24 chain 4588 chr17 83257441 + 77776743 77776792 SVA_E 1901 + 957 1006 67394 49 chain 3819 chr17 83257441 + 77776816 77776858 SVA_E 1901 + 932 974 43742 42 chain 6326 chr17 83257441 + 77791496 77791588 MER63D 473 + 365 456 79908 20 2 0 66 0 1 4 chain 30487 chr17 83257441 + 77792078 77792427 L1PA3long 6157 + 5809 6157 41589 86 4 3 259 chain 32585 chr17 83257441 + 77832294 77832788 MER1A 529 + 0 519 39883 17 25 49 59 20 21 70 2 0 240 8 10 53 chain 25876 chr17 83257441 + 77902116 77902493 THE1D 372 + 0 362 47903 75 18 0 96 25 28 163 chain 273741 chr17 83257441 + 77910297 77913812 L1PA6 6164 + 2970 6162 7616 109 0 1 103 1 2 4 0 1 247 0 1 45 0 1 879 0 8 34 3 6 210 0 1 1204 329 0 35 8 0 288 3 0 13 chain 4203 chr17 83257441 + 77915373 77915461 MIR 256 + 100 188 90097 7 2 0 31 24 26 24 chain 16957 chr17 83257441 + 77919048 77919243 HERVH-int 3825 + 2166 2361 59855 195 chain 28246 chr17 83257441 + 77919365 77919780 LTR7B 505 + 0 491 44492 108 0 10 33 6 48 15 14 38 26 0 2 85 1 0 76 14 13 37 chain 9010 chr17 83257441 + 77945142 77945302 L1PB2 3958 + 3613 3770 72536 4 1 0 32 14 15 17 2 1 71 2 0 17 chain 10270 chr17 83257441 + 77970571 77970785 MER30 238 + 0 238 69865 15 14 32 56 29 35 10 7 10 41 3 0 39 chain 23342 chr17 83257441 + 78222395 78222674 AluSp 311 + 11 291 51860 130 0 1 149 chain 5025 chr17 83257441 + 78282802 78282867 MER53 195 + 40 105 85547 65 chain 23919 chr17 83257441 + 78285652 78285931 AluSp 311 + 10 292 50916 81 0 3 198 chain 121128 chr17 83257441 + 78464953 78466441 SVA_C 1631 + 21 1617 15328 14 0 25 140 0 11 342 40 0 250 0 128 24 3 0 47 1 0 5 2 1 10 1 0 233 3 1 224 8 0 141 chain 8049 chr17 83257441 + 78468188 78468349 MER2 342 + 131 295 74754 4 0 1 31 1 0 46 30 41 24 8 0 17 chain 9786 chr17 83257441 + 78512475 78512600 MER34A1 583 + 9 136 70853 13 0 2 112 chain 21575 chr17 83257441 + 78513116 78513435 MER4D1 891 + 63 408 54403 50 9 8 106 10 37 100 1 0 7 0 1 36 chain 39963 chr17 83257441 + 78579449 78579971 MER41A 554 + 1 554 34687 59 4 14 61 0 7 69 0 12 174 1 2 58 0 1 96 chain 2753 chr17 83257441 + 78630633 78630684 MLT1C 463 + 373 428 101954 18 7 11 26 chain 2883 chr17 83257441 + 78667273 78667303 LTR57 402 + 101 131 100977 30 chain 15990 chr17 83257441 + 78668414 78668946 PABL_A 660 + 0 228 61036 14 0 1 69 320 14 77 0 1 52 chain 7094 chr17 83257441 + 78747932 78748020 MER51B 395 + 230 317 77285 15 1 0 72 chain 21996 chr17 83257441 + 78786221 78786505 AluSq10 312 + 0 295 53841 47 6 12 185 4 11 35 2 0 5 chain 19437 chr17 83257441 + 78917068 78917280 AluYa5 310 + 98 307 57097 204 3 0 5 chain 2640 chr17 83257441 + 78958462 78958528 MLT1C 463 + 395 462 102786 27 26 27 13 chain 9274 chr17 83257441 + 79002110 79002255 MER30 238 + 61 238 71964 32 6 1 12 4 32 15 5 14 71 chain 31030 chr17 83257441 + 79010891 79011346 LTR7B 505 + 0 505 41102 93 0 31 83 22 44 4 1 0 152 0 1 4 1 0 29 14 13 12 6 7 7 2 0 25 chain 5593 chr17 83257441 + 79018301 79018366 MER41B 635 + 32 97 82839 65 chain 2797 chr17 83257441 + 79061366 79061398 Tigger1 2417 + 2063 2095 101667 32 chain 16486 chr17 83257441 + 79066268 79066604 L1PB1 5432 + 5114 5420 60400 24 1 0 7 18 13 9 2 0 52 3 2 15 1 0 45 1 0 13 2 1 5 2 0 10 9 1 16 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 30457 chr17 83257441 + 79122448 79122918 L1MA2 4263 + 3654 4113 41622 8 1 0 140 8 5 63 12 14 70 11 11 93 7 0 17 2 1 29 1 0 8 chain 19092 chr17 83257441 + 79352122 79352462 MSTA 426 + 0 375 57451 103 39 51 45 26 31 6 3 0 45 0 1 14 1 21 58 chain 6756 chr17 83257441 + 79551326 79551401 MSTB 430 + 3 78 78456 75 chain 4527 chr17 83257441 + 79574113 79574167 MER41-int 2638 + 2565 2620 88179 34 0 1 20 chain 2467 chr17 83257441 + 79576835 79576875 MLT2C1 407 + 366 407 103820 19 4 5 17 chain 41049 chr17 83257441 + 79584073 79584753 L1PB1 5432 + 4646 5287 33934 180 12 15 150 7 6 81 1 0 23 46 16 21 1 0 4 3 2 14 4 0 10 2 0 52 19 17 28 2 3 13 1 0 6 chain 3362 chr17 83257441 + 79652765 79652946 HAL1 992 + 153 351 96445 17 11 9 20 89 97 19 6 17 19 chain 28420 chr17 83257441 + 79660212 79660636 L1PA11 4918 + 4078 4504 44234 106 0 5 4 0 1 60 1 2 75 1 0 64 15 12 52 15 13 17 1 0 8 0 2 5 chain 3053 chr17 83257441 + 79762712 79762979 L1MB7 1623 + 1144 1410 99267 34 215 214 18 chain 13353 chr17 83257441 + 79770840 79770986 L1PA3long 6157 + 6011 6157 64539 146 chain 5314 chr17 83257441 + 79860946 79861041 MLT1C 463 + 51 138 84124 53 10 8 12 6 0 14 chain 12140 chr17 83257441 + 79895474 79897503 L1MB3 1562 + 873 1555 66585 21 95 85 15 1 0 94 1717 382 54 1 0 31 chain 20540 chr17 83257441 + 79908887 79909159 AluY 311 + 28 296 55729 90 4 0 21 7 4 7 0 3 143 chain 3194 chr17 83257441 + 80075791 80075830 MADE1 96 + 56 96 97944 13 0 1 26 chain 30485 chr17 83257441 + 80153279 80153733 LTR7B 505 + 0 495 41590 108 0 10 57 0 38 12 31 25 5 1 0 23 0 2 49 1 0 36 1 0 30 0 1 45 14 13 41 chain 7034 chr17 83257441 + 80258067 80258155 MER4E1 777 + 0 88 77490 88 chain 12373 chr17 83257441 + 80266810 80266962 Tigger1 2417 + 463 615 66191 152 chain 36631 chr17 83257441 + 80397327 80397781 LTR2 463 + 0 463 36994 55 1 4 47 4 5 296 0 4 14 0 1 37 chain 400400 chr17 83257441 + 80399533 80413053 Harlequin-int 5206 + 135 5195 5147 171 0 4 63 8 0 14 8397 0 19 0 1 119 0 1 155 1 0 421 70 10 94 0 3 667 0 1 256 11 1 363 0 4 73 0 1 727 8 6 69 0 4 787 2 0 44 7 8 314 8 10 4 0 1 5 3 0 35 89 89 516 chain 31218 chr17 83257441 + 80399793 80400220 LTR7B 505 + 0 494 40955 105 0 10 60 0 38 12 4 28 17 11 1 9 0 6 155 14 13 40 chain 28737 chr17 83257441 + 80403188 80403996 HERVH-int 3825 + 2797 3825 43732 5 0 3 153 10 1 25 433 660 33 1 0 148 chain 28567 chr17 83257441 + 80407762 80408181 LTR7B 505 + 0 499 44002 35 0 2 13 0 2 53 0 10 60 0 38 12 4 28 25 0 2 108 0 1 19 8 10 23 14 13 45 chain 36734 chr17 83257441 + 80413068 80413516 LTR2 463 + 7 463 36939 48 1 4 47 4 5 296 0 4 52 chain 4289 chr17 83257441 + 80530408 80530514 MLT1C 463 + 10 117 89572 15 14 15 12 10 11 42 2 1 11 chain 1978 chr17 83257441 + 80915167 80915309 MER52A 1651 + 767 841 78222 38 68 0 36 chain 3283 chr17 83257441 + 80915485 80915519 MER52A 1651 + 807 841 97167 34 chain 2097 chr17 83257441 + 80915538 80915562 MER52A 1651 + 896 920 105809 24 chain 7274 chr17 83257441 + 80915585 80915702 MER52A 1651 + 767 920 76754 74 19 55 24 chain 2605 chr17 83257441 + 80915702 80915729 MER52A 1651 + 814 841 86054 27 chain 2097 chr17 83257441 + 80915748 80915772 MER52A 1651 + 896 920 105810 24 chain 6327 chr17 83257441 + 80915795 80915869 MER52A 1651 + 767 841 79905 74 chain 3558 chr17 83257441 + 81022994 81023042 L1MB5 1630 + 1454 1540 94763 17 0 38 31 chain 32047 chr17 83257441 + 81234840 81235306 LTR19A 502 + 0 490 40312 218 26 25 33 0 11 24 1 2 50 5 11 86 0 1 9 0 6 14 chain 27734 chr17 83257441 + 81275451 81275740 AluYg6 310 + 0 289 45271 289 chain 22455 chr17 83257441 + 81348073 81348374 AluSp 311 + 11 299 53189 21 5 0 233 3 0 25 5 0 9 chain 23930 chr17 83257441 + 81371111 81371412 AluSc 308 + 0 299 50896 26 1 0 231 2 1 41 chain 26573 chr17 83257441 + 81541894 81542195 AluYa5 310 + 11 310 46873 50 6 4 245 chain 11679 chr17 83257441 + 81563770 81563934 L1PA16 3655 + 3402 3567 67432 136 12 13 16 chain 138480 chr17 83257441 + 81617667 81619218 SVA_D 2077 + 43 2077 13222 225 1 3 490 0 40 102 0 438 11 2 1 91 0 1 4 0 1 18 0 1 292 0 1 315 chain 25664 chr17 83257441 + 81639702 81640002 AluY 311 + 6 305 48221 119 2 1 179 chain 3239 chr17 83257441 + 81675467 81675503 SVA_F 1814 + 394 430 97585 36 chain 78804 chr17 83257441 + 81675757 81676749 LTR13 1007 + 0 1007 21918 74 0 5 46 0 2 116 4 0 138 4 5 40 0 2 255 0 2 14 2 0 113 0 1 19 7 8 73 1 6 5 0 2 81 chain 5178 chr17 83257441 + 81895545 81895608 AluYk11 308 + 17 80 84781 63 chain 26010 chr17 83257441 + 81925532 81925828 AluY 311 + 6 303 47702 128 0 1 168 chain 8264 chr17 83257441 + 81944507 81944668 MER21C 908 + 118 230 74257 42 51 1 5 0 1 63 chain 75533 chr17 83257441 + 82038239 82039470 LTR13A 966 + 0 966 22710 75 307 13 24 9 3 92 0 34 414 0 2 112 1 0 197 chain 13964 chr17 83257441 + 82067297 82067476 MER4A1 472 + 281 462 63638 111 10 12 58 chain 56329 chr17 83257441 + 82174357 82174999 LTR6A 649 + 4 649 27478 381 0 2 202 1 0 10 0 2 48 chain 31681 chr17 83257441 + 82175382 82175813 MER4A1 472 + 0 472 40593 14 0 18 79 0 1 114 5 26 106 8 9 105 chain 40851 chr17 83257441 + 82176010 82176716 LTR14B 630 + 8 629 34058 227 84 0 9 1 0 100 7 28 19 0 9 24 41 5 5 2 0 80 3 1 22 9 19 73 chain 4281 chr17 83257441 + 82190042 82190092 Tigger2b_Pri 1066 + 477 527 89626 50 chain 4529 chr17 83257441 + 82198616 82198676 L1MDb 1215 + 675 735 88169 60 chain 18981 chr17 83257441 + 82206819 82207061 LTR8 732 + 31 273 57570 8 6 0 116 0 6 112 chain 8815 chr17 83257441 + 82296265 82296400 LTR22A 463 + 320 463 72964 17 16 20 75 0 4 27 chain 23252 chr17 83257441 + 82300389 82300676 AluSc5 308 + 0 293 52002 33 0 3 36 0 3 218 chain 61925 chr17 83257441 + 82376813 82377476 SVA_D 2077 + 1411 2074 25881 663 chain 27979 chr17 83257441 + 82471511 82471807 AluYk12 309 + 1 297 44905 296 chain 3577 chr17 83257441 + 82528937 82529015 MER20 218 + 50 127 94605 9 2 0 6 0 2 5 9 11 5 3 0 39 chain 40043 chr17 83257441 + 82636641 82637170 LTR10G 522 + 0 519 34625 40 5 0 312 0 1 12 0 1 82 4 1 50 11 7 13 chain 3842 chr17 83257441 + 82686412 82686479 MLT1C 463 + 85 146 92550 39 9 4 12 1 0 6 chain 297852 chr17 83257441 + 82952367 82956164 L1PA8 5853 + 1996 5853 6891 22 0 1 252 0 11 203 0 4 48 12 16 275 1 8 46 1 0 13 0 9 30 0 4 8 12 23 327 0 2 26 1 5 7 0 5 53 0 4 244 0 1 59 0 3 92 0 2 285 0 4 100 0 5 22 4 1 48 0 7 410 1 2 33 0 7 261 0 4 17 0 6 54 0 4 13 0 2 18 41 0 239 0 1 14 8 7 201 1 0 45 2 0 69 14 12 50 2 1 14 6 5 93 chain 116132 chr17 83257441 + 82995682 82997884 L1MA3 4352 + 2411 4093 16204 105 244 0 61 8 6 126 326 18 92 0 6 552 0 2 7 20 22 40 0 4 60 0 1 5 1 0 6 10 16 26 9 8 284 0 1 22 9 24 29 17 16 143 chain 4605 chr17 83257441 + 82995795 82995853 L1MA3 4352 + 2518 2577 87771 4 0 1 54 chain 12164 chr17 83257441 + 83164955 83165134 HSMAR2 1300 + 3 195 66541 42 17 30 120 chain 549672 chr17_GL000205v2_random 185591 + 44580 50603 L1PA2 6032 + 4 6032 772 1035 0 3 735 0 3 3398 0 1 840 2 0 13 chain 40689 chr17_GL000205v2_random 185591 + 67546 68067 LTR66 600 + 0 552 34154 415 2 0 27 0 33 77 chain 224175 chr17_GL000205v2_random 185591 + 115420 118438 L1PA7 6471 + 3292 6322 8920 102 0 1 85 17 16 41 17 18 23 0 4 57 0 1 290 0 1 417 0 3 154 0 2 151 0 1 170 7 8 112 3 0 408 12 13 163 1 2 86 1 0 8 5 6 75 2 1 82 2 1 337 0 1 132 0 8 9 8 0 41 chain 4361 chr17_GL000205v2_random 185591 + 161030 161082 L1P4 1494 + 432 484 89105 52 chain 541406 chr17_KI270729v1_random 280839 + 191353 197373 L1PA2 6032 + 1 6022 1244 430 0 1 681 0 1 2518 1 2 280 4 0 61 0 2 403 0 1 544 1 0 1097 chain 370163 chr18 80373285 + 17856 23118 L1PB1 5432 + 19 5103 5653 25 14 15 342 1 0 78 0 3 126 8 11 776 1 0 15 9 10 183 0 1 126 22 17 499 1 0 9 13 21 99 0 4 64 0 1 50 13 1 46 0 4 40 0 2 207 2 0 114 0 1 29 15 16 251 0 1 207 4 5 318 0 2 64 201 0 34 5 4 112 4 5 40 3 4 349 1 2 265 8 5 154 1 0 8 3 15 83 2 3 145 7 0 7 12 19 47 chain 168272 chr18 80373285 + 29644 32269 L1PA7 6471 + 4102 6455 11205 385 5 6 49 2 0 5 1 3 112 12 16 20 1 2 149 1 0 8 7 8 33 5 1 64 1 0 4 1 0 4 0 3 123 0 1 52 6 4 5 0 2 142 2 1 198 0 2 51 1 5 62 0 2 292 0 25 67 1 2 112 7 25 59 328 1 248 chain 538493 chr18 80373285 + 35813 41815 L1PA3long 6157 + 19 6152 1424 134 0 1 163 1 0 263 0 4 192 0 128 1423 1 2 368 1 0 601 1 0 2854 chain 3803 chr18 80373285 + 67611 67655 MLT2B3 573 + 0 44 92827 44 chain 16619 chr18 80373285 + 142878 143146 MER4B 649 + 24 344 60247 84 57 109 127 chain 13648 chr18 80373285 + 254579 254760 Tigger1 2417 + 62 255 64094 8 0 6 60 4 10 109 chain 3904 chr18 80373285 + 258255 258299 Tigger1 2417 + 1594 1638 92100 44 chain 32997 chr18 80373285 + 281560 282291 Tigger1 2417 + 466 951 39513 62 33 37 23 252 0 311 7 9 43 chain 52799 chr18 80373285 + 289850 290504 L1PA8 5853 + 5199 5851 28639 76 0 3 286 2 1 45 2 0 70 1 0 12 0 1 47 2 1 19 2 1 90 chain 33358 chr18 80373285 + 291798 292234 MER57A1 433 + 0 433 39209 71 5 0 14 6 2 239 0 6 101 chain 8294 chr18 80373285 + 308602 308715 MLT1B 390 + 0 114 74174 25 3 4 85 chain 78090 chr18 80373285 + 349075 350098 THE1A-int 1579 + 552 1579 22074 53 0 1 48 0 3 471 0 1 159 7 8 82 1 0 78 14 0 7 1 15 84 1 0 17 chain 23710 chr18 80373285 + 350105 350441 THE1A 353 + 7 353 51264 87 1 0 17 0 2 6 8 6 42 11 22 164 chain 6782 chr18 80373285 + 386371 386534 MER5A1 166 + 0 165 78375 16 66 68 81 chain 76355 chr18 80373285 + 404535 405591 MER11A 1151 + 0 1146 22477 55 0 99 22 8 0 54 1 0 64 4 0 146 0 1 40 0 24 33 0 1 143 0 3 38 0 1 111 25 1 11 8 15 22 15 0 36 0 1 60 6 7 119 0 4 35 chain 30447 chr18 80373285 + 405842 406227 MER41A 554 + 0 388 41629 42 0 1 40 4 5 117 0 1 182 chain 46363 chr18 80373285 + 418436 418986 MER41A 554 + 0 554 30900 408 0 4 142 chain 3929 chr18 80373285 + 449628 449849 LTR16B1 483 + 69 289 91923 17 66 63 14 85 87 39 chain 560843 chr18 80373285 + 535701 541726 L1HS 6032 + 1 6032 152 73 0 1 1493 1 4 2650 0 3 1065 1 0 742 chain 5296 chr18 80373285 + 552961 553036 L1PB1 5432 + 5348 5420 84213 22 1 0 21 1 0 13 1 0 16 chain 11221 chr18 80373285 + 656320 656504 MER4B 649 + 335 641 68217 40 0 126 12 3 1 50 11 10 60 1 0 7 chain 19598 chr18 80373285 + 734599 734868 L1PB2 3958 + 3460 3721 56907 81 6 0 76 1 0 64 2 1 39 chain 2670 chr18 80373285 + 737970 738001 MER58C 217 + 75 106 102604 31 chain 3047 chr18 80373285 + 740446 740483 L1MC4 1079 + 841 878 99340 37 chain 12771 chr18 80373285 + 769002 769206 Tigger3a 397 + 154 353 65485 61 9 18 43 20 6 71 chain 13606 chr18 80373285 + 785078 785262 MER30B 195 + 5 190 64157 56 1 2 4 1 0 26 0 1 96 chain 6699 chr18 80373285 + 785565 785721 MSTD 398 + 0 158 78640 15 5 6 66 48 49 22 chain 33500 chr18 80373285 + 795463 795912 L1PA8 5853 + 5403 5846 39091 121 1 0 40 2 1 44 2 0 69 2 1 8 2 1 12 0 1 39 2 1 10 0 1 8 1 0 86 chain 23311 chr18 80373285 + 831461 831755 MER4E 760 + 457 751 51916 16 5 0 7 0 5 266 chain 13636 chr18 80373285 + 835472 835635 L1PA2 6032 + 5868 6032 64109 148 1 2 14 chain 39462 chr18 80373285 + 841440 841996 LTR2C 499 + 3 499 35033 57 1 2 110 29 20 56 53 0 187 0 1 63 chain 3211 chr18 80373285 + 851156 851190 MADE1 96 - 4 38 97790 34 chain 8976 chr18 80373285 + 873159 873353 L1PA16 3655 + 3451 3619 72615 102 27 24 8 11 0 4 1 0 6 6 0 8 5 0 16 chain 35247 chr18 80373285 + 977875 978271 L1PA5 6144 + 5748 6144 37865 396 chain 404945 chr18 80373285 + 1040074 1045614 L1PB1 5432 + 19 5420 5095 387 1 0 138 8 1 16 0 3 198 1 0 261 14 0 380 17 0 289 0 16 48 0 1 68 0 9 317 0 1 122 8 0 217 0 4 88 0 5 203 1 15 36 1 0 12 1 2 369 1 5 502 1 0 4 8 1 24 7 10 191 0 1 105 0 5 97 0 1 25 0 1 22 0 1 180 0 20 125 0 1 82 3 0 175 1 5 53 0 1 240 152 6 6 1 0 17 5 4 10 2 1 10 6 2 10 2 0 52 18 16 25 5 7 12 1 0 16 1 0 6 16 6 19 24 19 24 1 0 17 22 20 13 chain 31646 chr18 80373285 + 1060814 1061284 MLT2A1 477 + 0 477 40629 140 10 11 15 4 8 74 0 1 136 4 0 6 6 0 8 11 0 9 8 30 39 chain 86575 chr18 80373285 + 1098033 1099321 LTR12C 1709 + 0 1709 20305 29 57 47 189 1 2 24 8 9 20 3 0 144 16 12 38 1 0 4 0 1 181 0 319 53 0 49 87 24 0 16 11 4 168 0 102 114 16 13 84 chain 9734 chr18 80373285 + 1299428 1299574 L1PA10 4194 + 4007 4150 70971 94 21 18 31 chain 18632 chr18 80373285 + 1326205 1326541 L1MA2 4263 + 3778 4113 57963 24 3 0 68 31 43 43 11 9 87 15 8 45 1 0 8 chain 232243 chr18 80373285 + 1329649 1332804 HERVL-int 5654 + 0 5654 8686 110 0 1 76 0 1 50 33 2807 124 0 2 193 5 6 736 1 0 789 0 3 61 0 3 240 1 3 13 0 1 212 0 16 120 304 0 87 chain 28562 chr18 80373285 + 1332804 1333186 MLT2A1 477 + 0 387 44015 86 0 2 54 0 1 18 8 12 22 2 0 192 chain 522189 chr18 80373285 + 1335217 1341359 L1PA5 6144 + 1 6144 2172 92 0 7 20 0 14 19 2 1 440 0 1 234 0 5 118 25 0 211 15 6 83 0 4 179 2 1 5 0 1 105 0 1 623 0 1 141 7 6 436 0 1 1438 2 3 722 1 0 101 0 1 250 0 5 18 2 0 53 1 0 797 chain 3911 chr18 80373285 + 1347013 1347059 MADE1 96 + 0 46 92040 46 chain 89576 chr18 80373285 + 1354330 1355313 L1PA2 6032 + 5048 6031 19746 983 chain 9819 chr18 80373285 + 1359625 1359752 MER85 139 + 1 139 70783 98 0 11 29 chain 165017 chr18 80373285 + 1385533 1388111 L1PA13 3608 + 930 3522 11410 176 0 1 10 0 3 136 19 19 35 2 0 5 0 2 97 0 13 141 1 2 38 14 15 255 42 50 21 0 10 40 0 3 249 0 5 59 3 4 201 6 7 52 1 0 278 0 2 26 6 8 23 0 4 13 63 69 123 66 51 82 0 1 4 2 1 10 2 0 57 5 4 46 30 21 42 15 6 18 1 0 14 0 3 12 18 7 14 1 0 4 chain 25611 chr18 80373285 + 1461478 1461761 AluY 311 + 0 291 48299 10 0 6 115 0 2 158 chain 36161 chr18 80373285 + 1471087 1471597 MLT2A2 560 + 1 535 37303 149 0 8 143 26 29 6 1 0 66 0 11 10 8 11 101 chain 30879 chr18 80373285 + 1478082 1478420 L1PA3long 6157 + 5819 6157 41242 338 chain 147758 chr18 80373285 + 1533813 1535431 L1PA3long 6157 + 4525 6149 12501 1612 0 6 6 chain 31813 chr18 80373285 + 1611340 1611811 MER4A1 472 + 2 472 40484 18 5 6 5 1 0 49 1 0 136 0 1 8 0 21 21 40 19 124 1 0 62 chain 101474 chr18 80373285 + 1633058 1634183 L1PA2 6032 + 4913 6029 18132 363 9 0 753 chain 30774 chr18 80373285 + 1639680 1640186 L1PREC2 3366 + 136 620 41327 22 14 23 19 9 4 5 1 0 23 1 0 14 1 0 11 3 1 8 0 2 23 2 1 114 1 0 64 10 9 58 15 0 5 5 0 78 chain 16293 chr18 80373285 + 1644849 1645031 L1PA5 6144 + 4500 4682 60631 182 chain 60553 chr18 80373285 + 1645032 1645730 L1PA5 6144 + 4682 5384 26213 615 0 4 83 chain 4316 chr18 80373285 + 1649880 1649935 MLT2A2 560 + 507 560 89392 7 2 0 46 chain 39581 chr18 80373285 + 1690215 1690763 MLT2A2 560 + 0 560 34973 28 0 5 310 7 8 14 4 0 42 0 11 79 7 6 57 chain 422085 chr18 80373285 + 1700420 1705789 L1PA8 5853 + 461 5847 4854 9 0 10 355 20 0 383 6 19 305 0 1 111 2 1 182 0 1 49 0 2 261 10 0 71 2 0 40 1 3 213 4 8 17 0 9 131 0 1 71 2 0 29 0 1 1037 0 5 173 4 0 50 0 1 37 0 10 113 0 1 143 64 63 556 5 6 66 1 4 279 0 1 139 0 1 84 4 0 32 0 1 18 1 0 44 3 1 69 2 1 14 1 0 50 1 0 17 1 0 87 chain 61861 chr18 80373285 + 1756779 1757469 L1PA4 6152 + 5453 6143 25899 690 chain 4703 chr18 80373285 + 1764815 1764881 MER92B 628 + 83 149 87250 4 0 1 56 1 0 5 chain 127942 chr18 80373285 + 1768719 1770132 L1PA4 6152 + 4735 6151 14285 563 0 4 741 1 0 108 chain 471997 chr18 80373285 + 1784136 1790586 L1PA8A 6298 + 258 6291 3812 7 1 0 48 1 0 15 8 2 77 2 0 19 19 16 237 1 0 101 11 20 125 8 9 53 1 0 82 0 2 40 2 5 25 2 0 89 1 0 32 0 3 26 3 4 575 473 0 12 1 14 454 2 1 154 1 2 341 3 4 113 0 4 132 6 9 171 9 10 82 20 19 55 1 4 253 0 1 166 0 1 390 4 15 267 0 4 147 0 1 382 1 0 135 0 16 255 2 0 104 3 2 404 0 1 296 chain 19594 chr18 80373285 + 1815699 1816096 L1PB1 5432 + 4924 5330 56909 158 124 88 50 16 16 41 0 45 8 chain 55833 chr18 80373285 + 1910885 1911572 L1P1 4361 + 4 691 27588 687 chain 135654 chr18 80373285 + 1911572 1913093 L1PA5 6144 + 4607 6144 13469 439 0 14 287 1 0 634 0 3 160 chain 8764 chr18 80373285 + 1942832 1942947 MSTB-int 1649 + 1521 1636 73070 16 1 0 70 0 1 28 chain 18517 chr18 80373285 + 1991930 1992259 THE1C 375 + 0 336 58086 105 1 2 79 11 13 27 61 65 45 chain 36052 chr18 80373285 + 2091931 2092407 MER4A1 472 + 0 472 37383 200 30 26 246 chain 9600 chr18 80373285 + 2158041 2158159 L1PA7 6471 + 6351 6469 71267 118 chain 55367 chr18 80373285 + 2162187 2162916 MER4E1 777 + 0 769 27755 23 0 2 69 2 1 154 1 0 65 15 34 67 0 1 17 0 1 107 1 9 132 0 11 76 chain 33643 chr18 80373285 + 2166911 2167379 MER9a3 513 + 0 492 38969 22 0 1 103 4 3 4 0 1 13 1 2 30 0 1 73 6 5 51 13 34 91 0 1 57 chain 25440 chr18 80373285 + 2216137 2216589 THE1C 375 + 0 375 48568 80 5 6 89 0 2 8 23 21 113 77 0 30 1 0 26 chain 84648 chr18 80373285 + 2244661 2247151 L1PB1 5432 + 12 2519 5314 7 1 0 32 4 3 350 9 2 196 1 0 160 0 1 49 23 24 304 0 1 202 0 1 51 2 0 8 5 0 23 7 24 100 1 0 4 0 2 6 0 1 40 0 1 26 2 3 12 6 7 197 0 3 523 0 4 118 1 2 20 chain 551272 chr18 80373285 + 2247167 2253196 L1PA2 6032 + 0 6028 654 74 0 1 180 2 1 270 4 0 2523 1 0 451 0 4 372 0 3 159 0 1 504 1 0 1323 4 1 161 chain 98348 chr18 80373285 + 2253249 2256142 L1PB1 5432 + 2519 5424 5314 63 0 3 135 2 0 122 1 0 390 4 5 754 0 1 341 0 1 93 0 1 42 12 29 121 0 1 5 3 0 87 0 1 35 0 10 8 0 1 25 10 13 135 0 11 151 1 2 9 1 0 20 1 0 12 1 0 12 5 1 8 2 0 53 7 6 11 1 0 39 35 21 30 12 9 10 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 25387 chr18 80373285 + 2316891 2317294 MER50 708 + 68 682 48641 37 0 1 123 15 212 22 7 13 4 1 0 11 23 24 87 2 9 71 chain 241290 chr18 80373285 + 2343140 2345806 L1PA4 6152 + 2679 5351 8445 1032 0 1 1451 0 1 140 0 4 43 chain 34183 chr18 80373285 + 2359468 2359900 MER57A1 433 + 0 433 38576 122 0 1 157 3 4 83 1 0 66 chain 19208 chr18 80373285 + 2378353 2378567 L1PA2 6032 + 5818 6032 57340 214 chain 52560 chr18 80373285 + 2399510 2400131 L1PA6 6164 + 5538 6161 28709 273 0 1 203 3 4 142 chain 3129 chr18 80373285 + 2411564 2411597 MLT2D 439 + 406 439 98548 33 chain 5799 chr18 80373285 + 2445676 2445743 MER34A 573 + 9 76 81928 67 chain 86931 chr18 80373285 + 2596236 2597185 L1PA3long 6157 + 5207 6157 20244 800 0 1 149 chain 16662 chr18 80373285 + 2626759 2627031 L1PA16 3655 + 3373 3619 60196 151 0 1 53 52 25 16 chain 28169 chr18 80373285 + 2632019 2632374 THE1A 353 + 0 353 44604 91 1 0 18 2 1 243 chain 128534 chr18 80373285 + 2632374 2633968 THE1A-int 1579 + 0 1574 14215 670 21 21 29 0 1 190 22 0 367 8 9 287 chain 28281 chr18 80373285 + 2633973 2634329 THE1A 353 + 0 353 44441 108 5 2 243 chain 21364 chr18 80373285 + 2646392 2646662 AluSc 308 + 15 282 54686 96 5 1 18 0 1 151 chain 33048 chr18 80373285 + 2660882 2661338 L1PA8 5853 + 5398 5847 39480 166 1 0 44 2 0 70 22 20 42 2 1 19 2 1 86 chain 28346 chr18 80373285 + 2661874 2662183 AluYb8 318 + 0 306 44348 109 1 0 14 2 0 183 chain 8608 chr18 80373285 + 2806664 2806774 L1PA16 3655 + 3466 3578 73440 15 0 2 95 chain 25275 chr18 80373285 + 2839334 2840001 MER50 708 + 300 680 48829 58 9 8 83 1 0 33 1 0 61 0 5 20 312 23 89 chain 3458 chr18 80373285 + 2957457 2957496 Tigger4a 237 + 198 237 95564 39 chain 38331 chr18 80373285 + 3023786 3024212 L1PA5 6144 + 5702 6130 35827 292 0 2 134 chain 57392 chr18 80373285 + 3049789 3050434 SVA_B 1603 + 921 1603 27133 32 9 49 595 3 0 6 chain 5010 chr18 80373285 + 3093567 3093624 U7 62 + 0 57 85607 57 chain 13544 chr18 80373285 + 3182276 3182430 L1PA5 6144 + 5975 6130 64260 26 0 1 128 chain 14470 chr18 80373285 + 3227252 3227502 L1MB3 1562 + 1224 1451 62935 127 1 0 50 3 0 5 46 27 18 chain 3959 chr18 80373285 + 3230562 3230626 MER51A 677 + 176 231 91700 23 9 0 32 chain 21629 chr18 80373285 + 3240291 3240623 THE1B 368 + 0 356 54314 40 0 15 120 1 0 17 42 52 112 chain 22395 chr18 80373285 + 3242219 3242849 THE1B 368 + 13 367 53283 26 1 16 120 1 0 21 1 0 4 0 9 4 0 1 18 4 12 82 307 0 41 chain 3029 chr18 80373285 + 3270512 3270544 LTR16B2 458 + 374 406 99521 32 chain 138901 chr18 80373285 + 3299192 3303957 L1PB3 3668 + 6 3566 13199 12 6 4 32 2 0 10 13 8 4 1 0 24 13 6 19 1 0 5 1 0 7 3 0 747 1 3 79 0 2 4 0 1 237 2132 1513 35 47 9 129 0 5 87 2 0 14 1 0 4 3 0 78 1 2 183 1 2 18 520 8 94 1 0 9 1 2 76 20 4 18 1 0 3 1 0 25 9 7 31 chain 2857 chr18 80373285 + 3339027 3339059 MER31-int 1156 + 187 219 101173 32 chain 10587 chr18 80373285 + 3477307 3477437 Tigger1 2417 + 1951 2081 69252 130 chain 10049 chr18 80373285 + 3519901 3520044 L1PA8 5853 + 5712 5853 70302 28 2 1 19 2 1 92 chain 3957 chr18 80373285 + 3524331 3524388 L1MB1 2102 + 1899 1954 91703 43 2 0 12 chain 5046 chr18 80373285 + 3549821 3549883 MLT1B 390 + 27 89 85436 62 chain 32961 chr18 80373285 + 3558928 3559372 MER75 514 + 63 514 39542 22 4 5 49 0 1 143 0 1 5 1 2 197 1 4 22 chain 4877 chr18 80373285 + 3560608 3560676 MER75B 242 + 173 242 86281 43 2 3 23 chain 279072 chr18 80373285 + 3736731 3739781 L1PA3long 6157 + 3104 6152 7449 573 2 0 2475 chain 12137 chr18 80373285 + 3945660 3945795 L1PA2 6032 + 5897 6032 66591 135 chain 11575 chr18 80373285 + 3948620 3948909 L1PB1 5432 + 5134 5422 67617 13 1 0 9 2 0 3 2 0 9 7 5 34 12 29 19 1 10 16 1 0 15 2 0 6 16 6 13 8 6 4 1 0 15 2 0 24 1 0 8 0 1 12 1 0 13 1 0 18 chain 89026 chr18 80373285 + 3989643 3990628 L1PA4 6152 + 5150 6136 19852 78 1 2 662 1 0 109 0 1 134 chain 8697 chr18 80373285 + 4053545 4053808 MSTA 426 + 159 426 73221 25 15 62 12 93 64 61 15 1 42 chain 10081 chr18 80373285 + 4067412 4067553 MER4D1 891 + 104 238 70236 11 7 0 123 chain 38879 chr18 80373285 + 4087222 4087701 MER9a3 513 + 0 513 35447 18 0 2 87 4 14 58 0 1 138 0 21 174 chain 68132 chr18 80373285 + 4088694 4089518 L1PA10 4194 + 3330 4150 24421 66 2 0 646 0 1 73 3 0 34 chain 12747 chr18 80373285 + 4147978 4148169 MER107 203 + 0 184 65533 60 6 4 102 3 1 12 3 0 5 chain 11727 chr18 80373285 + 4151836 4151975 L1PA8 5853 + 5716 5853 67355 28 1 0 16 1 0 93 chain 9973 chr18 80373285 + 4220925 4221079 Tigger3a 397 + 143 303 70479 118 22 28 14 chain 49948 chr18 80373285 + 4287198 4287849 L1PA8 5853 + 5126 5853 29586 28 1 17 4 1 0 58 0 46 180 3 15 90 1 0 44 2 0 40 0 10 21 1 0 9 2 1 51 2 1 19 1 0 93 chain 32212 chr18 80373285 + 4298414 4298783 L1PA2 6032 + 5660 6031 40173 352 2 4 15 chain 16649 chr18 80373285 + 4343617 4343800 L1PA7 6471 + 6278 6461 60215 183 chain 86368 chr18 80373285 + 4363481 4364415 L1PA3long 6157 + 5222 6156 20345 934 chain 77340 chr18 80373285 + 4477329 4478177 L1HS 6032 + 2 851 22237 362 0 1 486 chain 30822 chr18 80373285 + 4538338 4538743 MSTA 426 + 1 408 41296 27 0 1 100 4 3 76 2 0 64 0 4 132 chain 13170 chr18 80373285 + 4545271 4545434 MER6A 605 + 408 571 64827 163 chain 54857 chr18 80373285 + 4560899 4561599 L1P3 4156 + 2873 3575 27923 336 0 1 59 4 6 20 2 0 230 0 1 49 chain 87296 chr18 80373285 + 4583769 4584796 L1PA7 6471 + 5427 6459 20171 18 0 1 168 0 2 803 3 5 35 chain 19468 chr18 80373285 + 4661611 4661935 MSTA 426 + 0 408 57073 40 2 1 58 33 59 48 6 45 45 1 21 91 chain 59828 chr18 80373285 + 4681679 4682430 LTR17 781 + 0 781 26422 25 0 1 95 0 9 35 4 11 132 10 0 19 0 1 381 4 26 46 chain 238484 chr18 80373285 + 4683922 4686668 L1PA5 6144 + 3390 6144 8506 74 1 2 574 1 2 614 0 2 211 1 0 344 0 3 486 1 3 439 chain 10587 chr18 80373285 + 4686892 4687066 HERV17-int 4347 + 12 181 69253 14 2 1 48 9 8 29 2 0 19 9 8 42 chain 375894 chr18 80373285 + 4687076 4691411 HERV17-int 4347 + 13 4347 5554 14 1 0 51 1 0 36 2 0 25 1 0 126 0 2 222 1 0 4 0 1 155 6 7 820 0 1 1670 1 0 1018 0 1 181 chain 56231 chr18 80373285 + 4691724 4692409 LTR17 781 + 0 781 27504 119 0 9 130 0 89 52 4 1 373 0 1 7 chain 50569 chr18 80373285 + 4692423 4694665 L1PB1 5432 + 2384 4586 9367 32 0 10 67 3 0 8 1 0 339 1 0 38 2 6 837 0 3 237 1 0 59 0 1 86 53 1 478 chain 484021 chr18 80373285 + 4694737 4700538 L1PA5 6144 + 0 5871 3553 120 0 14 77 9 58 196 0 4 599 21 14 87 9 0 50 1 0 549 0 13 529 7 0 40 13 0 23 3 31 271 0 1 198 4 0 800 2 1 365 1 2 458 0 2 449 1 0 893 0 1 26 chain 20503 chr18 80373285 + 4700800 4701709 L1PB1 5432 + 4636 5420 9367 99 1 0 62 2 1 195 12 11 95 95 4 11 1 0 20 1 0 13 1 0 11 15 9 53 2 1 16 1 0 44 39 27 19 3 1 4 1 0 14 2 0 27 1 0 18 1 0 13 1 0 16 chain 34053 chr18 80373285 + 4724870 4725304 MER4A1 472 + 2 440 38668 27 0 1 70 0 2 116 1 2 220 chain 119498 chr18 80373285 + 4742288 4743941 L1PB2 3958 + 2207 3838 15608 74 21 24 179 0 1 7 5 0 432 1 0 280 2 1 104 2 0 52 1 0 16 3 0 62 18 12 89 5 0 77 1 0 62 1 0 67 0 1 28 1 0 63 chain 6067 chr18 80373285 + 4754917 4754987 MER30B 195 + 125 195 80844 70 chain 8589 chr18 80373285 + 4784895 4785403 L1MA9 1812 + 1254 1705 73470 40 72 70 26 1 0 25 3 0 6 1 0 24 93 80 14 175 138 28 chain 39045 chr18 80373285 + 4815720 4816353 LTR12_ 688 + 0 688 35321 267 0 2 159 146 199 61 chain 54045 chr18 80373285 + 4844398 4845474 MER4E 760 + 0 760 28214 23 0 1 92 2 0 35 11 29 40 0 2 31 0 1 7 6 7 260 3 0 5 2 1 25 333 0 201 chain 133282 chr18 80373285 + 4880341 4881842 L1PA5 6144 + 4570 6076 13719 512 0 2 212 0 3 777 chain 507256 chr18 80373285 + 4892800 4898657 L1PA5 6144 + 4 6077 2879 751 14 220 1033 1 2 1355 0 2 512 2 1 491 0 1 710 0 2 206 1 0 414 5 11 362 chain 9684 chr18 80373285 + 4957645 4957749 L1PB1 5432 + 3816 3920 71092 104 chain 14095 chr18 80373285 + 4981888 4982066 L1PA10 4194 + 1456 1634 63464 178 chain 14772 chr18 80373285 + 4982066 4982365 L1PB1 5432 + 5138 5420 62565 20 4 0 11 2 0 50 1 0 18 1 0 38 6 5 14 16 15 18 12 9 10 2 0 24 1 0 10 0 1 10 1 0 13 1 0 16 chain 550743 chr18 80373285 + 5004136 5010155 L1PA2 6032 + 0 6031 690 72 0 1 179 5 4 454 0 7 2433 0 5 2876 chain 5747 chr18 80373285 + 5040298 5040414 MER5A1 166 + 47 165 82141 37 1 0 30 25 28 23 chain 25494 chr18 80373285 + 5041766 5042113 THE1A 353 + 1 353 48491 69 0 1 39 1 0 151 8 15 20 2 0 57 chain 42187 chr18 80373285 + 5047539 5048141 LTR12 884 + 2 878 33257 207 0 156 12 2 0 67 44 31 173 0 3 5 11 141 81 chain 22108 chr18 80373285 + 5058026 5058269 L1PA4 6152 + 5908 6151 53684 243 chain 35552 chr18 80373285 + 5082546 5083199 MER41A 554 + 0 554 37684 118 112 18 77 1 4 102 0 13 18 26 4 113 33 34 53 chain 47991 chr18 80373285 + 5085229 5085848 LTR12 884 + 0 857 30301 90 4 111 16 1 133 24 5 3 46 0 1 433 chain 55008 chr18 80373285 + 5090476 5091191 LTR12 884 + 0 869 27873 55 0 41 113 5 112 19 1 2 39 2 0 39 1 4 383 14 18 44 chain 506901 chr18 80373285 + 5122008 5128135 L1PA6 6164 + 5 6156 2895 390 20 19 22 0 1 12 8 0 118 3 2 56 5 0 6 3 8 148 0 17 648 0 1 129 2 5 738 0 2 199 0 2 663 1 0 145 0 2 358 1 0 672 0 2 1095 0 7 328 1 0 356 chain 17085 chr18 80373285 + 5130955 5131193 L1PB4 2604 + 2166 2406 59716 138 5 9 64 2 0 29 chain 73883 chr18 80373285 + 5171274 5172298 L1MA3 4352 + 3162 4198 23123 183 0 1 27 9 8 20 1 2 690 66 78 9 1 0 18 chain 118003 chr18 80373285 + 5184309 5186039 L1PA15 4387 + 2636 4356 15885 41 0 1 4 0 4 11 10 7 120 0 1 103 1 0 240 2 0 28 8 7 79 5 4 222 0 1 245 1 0 59 2 0 16 4 0 62 3 1 14 0 1 25 1 0 21 32 35 16 0 1 99 1 0 18 5 18 45 1 0 22 4 0 6 5 4 50 6 3 46 3 1 14 5 0 25 chain 6675 chr18 80373285 + 5242411 5242541 Tigger5 388 + 143 257 78718 32 9 0 16 7 0 10 0 5 29 5 0 22 chain 3335 chr18 80373285 + 5257543 5257589 LTR49 580 + 94 138 96725 9 1 0 29 1 0 6 chain 211915 chr18 80373285 + 5263045 5266482 L1PA13 3608 + 113 3497 9289 22 3 0 27 121 103 24 8 7 122 2 3 7 1 0 17 2 0 14 15 9 13 1 0 15 12 10 10 2 0 18 4 3 38 6 4 43 10 8 135 0 2 226 0 2 29 1 0 20 20 22 116 7 6 238 0 3 34 18 19 8 0 1 7 1 0 10 6 10 161 0 1 91 11 14 39 8 9 43 16 17 4 1 0 6 0 4 54 0 4 32 0 2 25 6 7 119 1 2 73 1 0 11 10 8 4 0 1 156 10 4 45 8 5 159 2 1 30 0 1 20 2 3 101 10 0 7 5 4 74 0 1 109 1 0 4 0 1 158 1 0 24 5 4 111 5 3 61 1 0 21 3 0 31 1 0 4 1 0 5 34 22 6 0 2 17 9 5 20 1 0 20 0 3 6 chain 137610 chr18 80373285 + 5272472 5274504 L1MA2 4263 + 2091 4114 13294 24 23 31 11 0 1 8 5 7 71 0 1 216 0 2 181 2 0 34 1 0 90 3 0 5 7 9 136 1 0 4 1 0 4 0 2 155 0 15 7 22 7 128 11 12 64 0 11 5 11 0 33 0 4 65 0 1 132 2 0 13 0 3 5 7 0 75 2 1 122 3 4 19 3 0 107 2 0 5 0 1 36 1 0 8 1 0 66 0 2 5 1 0 17 22 9 39 1 0 10 chain 57858 chr18 80373285 + 5281624 5282263 L1PA3long 6157 + 5479 6149 27008 511 0 30 76 0 1 52 chain 10467 chr18 80373285 + 5315789 5315908 L1P1 4361 + 2569 2688 69472 119 chain 165585 chr18 80373285 + 5325434 5327677 L1PA11 4918 + 2235 4504 11366 6 1 0 92 0 1 41 0 2 45 1 2 25 1 2 130 0 8 130 2 0 213 0 1 257 4 15 387 1 2 53 0 1 42 0 1 32 1 2 14 5 12 22 0 1 63 0 1 484 11 6 54 15 14 78 2 0 7 11 10 13 chain 8996 chr18 80373285 + 5338986 5339096 MSTA 426 + 294 408 72562 14 0 4 96 chain 44486 chr18 80373285 + 5345010 5345656 L1PA15 4387 + 73 723 31837 18 17 16 146 1 0 53 1 2 319 31 34 55 0 2 5 chain 69394 chr18 80373285 + 5359839 5362230 L1PA8 5853 + 4593 5853 24142 139 19 20 253 0 1 4 1 0 20 1478 351 139 0 1 43 1 0 46 2 0 69 1 0 65 1 0 16 1 0 93 chain 31006 chr18 80373285 + 5389600 5390004 L1PA16 3655 + 2678 3092 41116 78 0 5 140 0 3 18 1 0 151 0 3 16 chain 16446 chr18 80373285 + 5445767 5446001 MER1B 344 + 103 342 60453 161 20 25 53 chain 30172 chr18 80373285 + 5488219 5488568 L1PA7 6471 + 6108 6464 41869 53 0 1 7 0 6 289 chain 39740 chr18 80373285 + 5565867 5566312 L1P1 4361 + 3885 4328 34864 266 1 0 154 1 0 23 chain 15543 chr18 80373285 + 5587346 5587580 MER44A 345 + 95 345 61598 6 0 6 58 15 22 65 1 4 89 chain 303928 chr18 80373285 + 5684668 5687891 L1HS 6032 + 1 3224 6746 3223 chain 4956 chr18 80373285 + 5715242 5715323 L1PB3 3668 + 3489 3566 85855 6 1 0 8 1 0 25 3 1 37 chain 23808 chr18 80373285 + 5822099 5822462 THE1B 368 + 0 368 51091 169 1 0 25 51 57 117 chain 45342 chr18 80373285 + 5859964 5860668 L1MA2 4263 + 3423 4106 31399 63 0 1 85 1 0 12 5 1 77 1 0 11 4 0 16 2 1 80 3 4 35 4 1 135 32 30 83 15 8 40 chain 4868 chr18 80373285 + 5861767 5861837 MER41B 635 + 481 551 86334 12 1 0 14 1 2 42 chain 200949 chr18 80373285 + 5862420 5864796 L1PA6 6164 + 3759 6146 9687 144 0 2 143 1 0 396 0 1 189 0 2 507 0 1 261 0 2 186 0 2 237 2 0 11 13 14 50 0 1 82 2 3 148 0 1 4 chain 27244 chr18 80373285 + 5865813 5866187 PABL_A-int 1935 + 512 884 45908 84 2 0 43 1 0 5 1 2 24 1 0 82 0 1 131 chain 2953 chr18 80373285 + 5907150 5907183 L1MC4 1079 + 283 316 100337 33 chain 32417 chr18 80373285 + 5995948 5996420 MER75 514 + 0 485 40023 34 14 10 12 0 8 9 15 16 76 3 8 144 1 0 144 1 5 19 chain 39889 chr18 80373285 + 5997189 5997835 MER4A1_ 611 + 0 611 34747 40 3 4 10 15 0 50 20 21 81 23 10 78 17 0 68 1 8 17 6 5 69 0 1 135 0 1 13 chain 14043 chr18 80373285 + 6035785 6035938 L1P1 4361 + 2974 3127 63529 153 chain 25818 chr18 80373285 + 6122341 6122697 THE1B 368 + 0 368 47991 44 0 15 106 9 8 119 2 1 8 1 0 67 chain 5237 chr18 80373285 + 6136249 6136312 MER50 708 + 366 430 84512 50 0 1 13 chain 4578 chr18 80373285 + 6136530 6136597 MER51A 677 + 179 236 87922 20 10 0 37 chain 22258 chr18 80373285 + 6153612 6153967 THE1D 372 + 0 372 53469 61 4 14 90 21 23 5 1 0 28 7 13 74 0 1 26 6 5 32 chain 546157 chr18 80373285 + 6163697 6169833 L1PA4 6152 + 3 6146 961 1066 1 0 775 0 1 532 0 2 290 0 1 487 0 2 1039 1 3 434 1 0 241 0 1 285 1 0 846 0 1 137 chain 204401 chr18 80373285 + 6232915 6235324 L1PA6 6164 + 3748 6157 9558 614 0 4 547 0 1 933 11 10 145 16 15 133 3 0 7 chain 4878 chr18 80373285 + 6241511 6241590 MADE1 96 + 0 94 86271 30 1 17 23 2 1 23 chain 17490 chr18 80373285 + 6277103 6277294 L1PA2 6032 + 5835 6026 59252 191 chain 8839 chr18 80373285 + 6286129 6286618 MER65C 458 + 274 420 72893 33 6 5 14 345 3 91 chain 14645 chr18 80373285 + 6322528 6322721 L1MA3 4352 + 3751 3947 62736 153 1 4 39 chain 23034 chr18 80373285 + 6322850 6323247 MSTA 426 + 2 426 52309 94 12 33 76 60 58 36 10 18 109 chain 114898 chr18 80373285 + 6353504 6355148 L1MA2 4263 + 2477 4114 16399 14 0 3 45 1 0 14 0 4 88 8 8 138 8 10 64 7 6 37 1 2 143 4 3 4 0 1 276 1 4 62 0 1 180 5 1 75 2 1 135 2 0 5 0 2 5 3 0 55 3 1 92 2 1 9 1 0 92 7 0 17 0 1 29 1 0 9 chain 36062 chr18 80373285 + 6391780 6392266 L1PB3 3668 + 2122 2626 37377 82 0 1 71 0 5 55 0 4 21 7 0 193 1 15 41 0 1 15 chain 13353 chr18 80373285 + 6403709 6403883 L1PB2 3958 + 3668 3838 64538 11 1 0 74 2 0 22 1 0 63 chain 98430 chr18 80373285 + 6419311 6420388 L1PA3long 6157 + 5075 6149 18488 1067 3 0 7 chain 3048 chr18 80373285 + 6479125 6479161 L1MA9 1812 + 908 944 99323 36 chain 26187 chr18 80373285 + 6533367 6533723 THE1B 368 + 0 356 47449 13 2 0 27 0 5 127 2 1 11 10 8 164 chain 28663 chr18 80373285 + 6696241 6696616 THE1C 375 + 0 375 43856 115 1 2 6 3 0 61 1 2 127 0 1 61 chain 515156 chr18 80373285 + 6699818 6705686 L1PA5 6144 + 3 5879 2511 213 0 6 219 0 1 37 0 1 241 3 0 6 3 4 696 7 0 194 0 4 75 0 1 788 1 0 42 0 1 258 0 1 362 0 2 21 1 0 67 1 0 1532 0 1 484 0 1 32 0 1 585 chain 20050 chr18 80373285 + 6788049 6788368 MSTA 426 + 10 337 56313 118 2 0 8 7 14 54 38 41 92 chain 139408 chr18 80373285 + 6799216 6800866 L1PA7 6471 + 4789 6465 13147 272 0 5 213 5 24 311 0 2 82 0 2 759 2 0 6 chain 36800 chr18 80373285 + 6878098 6878497 L1PA3long 6157 + 5750 6149 36883 399 chain 12671 chr18 80373285 + 6898771 6899028 L1PB1 5432 + 5192 5427 65677 28 2 1 15 1 0 43 1 0 17 12 0 31 2 0 4 1 0 15 2 0 24 1 0 12 10 9 13 1 3 15 2 0 5 chain 46082 chr18 80373285 + 6925621 6926180 LTR19B 566 + 0 566 31023 251 0 1 42 0 1 50 0 2 22 1 0 160 3 7 30 chain 22754 chr18 80373285 + 6943576 6943865 AluSp 311 + 10 304 52751 122 3 0 5 2 10 157 chain 3052 chr18 80373285 + 7065325 7065360 L1MC2 1988 + 1953 1988 99272 35 chain 145789 chr18 80373285 + 7097867 7099470 SVA_D 2077 + 42 2065 12628 163 0 11 662 0 310 129 0 99 649 chain 55690 chr18 80373285 + 7153869 7154479 L1PA3long 6157 + 5537 6147 27665 610 chain 285266 chr18 80373285 + 7180858 7184175 L1PA6 6164 + 2839 6162 7278 305 1 0 41 3 0 4 0 1 54 0 1 153 0 1 34 0 1 4 1 0 927 0 4 616 5 5 325 0 3 844 chain 2811 chr18 80373285 + 7250217 7250247 MER58A 224 + 53 83 101607 30 chain 10427 chr18 80373285 + 7270659 7270893 L1PA16 3655 + 3304 3534 69563 32 62 55 22 7 8 65 9 11 37 chain 16488 chr18 80373285 + 7334416 7334767 L1PB1 5432 + 5116 5427 60397 18 1 0 13 1 0 9 2 0 3 2 0 9 2 0 51 4 3 15 2 1 43 1 0 15 3 0 6 13 6 13 8 6 4 1 0 15 3 1 23 1 0 21 1 0 13 10 0 18 2 0 5 chain 13371 chr18 80373285 + 7361250 7361784 LTR12C 1709 + 718 1004 64510 31 106 24 5 1 0 26 47 6 27 161 0 72 8 45 50 chain 5606 chr18 80373285 + 7361572 7361654 LTR12C 1709 + 837 1038 74409 38 5 124 39 chain 5517 chr18 80373285 + 7361784 7361876 LTR12C 1709 + 767 818 68587 35 41 0 16 chain 3882 chr18 80373285 + 7387741 7387786 LTR12F 595 + 215 260 92279 45 chain 488076 chr18 80373285 + 7398136 7403452 L1PA2 6032 + 711 6032 3466 1691 0 1 1214 0 1 611 0 4 1779 1 0 20 chain 19582 chr18 80373285 + 7417192 7417449 AluSc 308 + 40 291 56918 234 11 5 12 chain 36511 chr18 80373285 + 7445112 7445513 L1PA2 6032 + 5631 6032 37074 401 chain 4077 chr18 80373285 + 7473028 7473074 MLT1B 390 + 296 342 90906 46 chain 23900 chr18 80373285 + 7473158 7473453 AluSc5 308 + 0 295 50944 295 chain 19517 chr18 80373285 + 7485368 7485642 AluSc5 308 + 4 290 56998 44 40 52 190 chain 37015 chr18 80373285 + 7514972 7515488 LTR10D 510 + 0 510 36725 64 7 0 11 2 0 6 0 11 11 3 0 43 0 1 77 7 0 10 6 9 176 2 0 91 chain 93971 chr18 80373285 + 7554271 7555324 L1P2 5180 + 1694 2746 19042 36 0 1 221 2 0 794 chain 3238 chr18 80373285 + 7563310 7563349 Zaphod 902 + 397 436 97594 39 chain 28173 chr18 80373285 + 7611588 7611941 THE1B 368 + 0 368 44601 44 0 15 116 1 0 23 0 2 99 1 0 69 chain 135454 chr18 80373285 + 7651418 7652901 L1PA3long 6157 + 4662 6145 13492 1483 chain 35818 chr18 80373285 + 7662270 7662836 L1MA3 4352 + 3788 4332 37517 305 32 9 9 0 3 65 1 0 20 1 6 36 22 20 21 1 0 6 1 0 26 1 0 14 1 0 4 chain 323466 chr18 80373285 + 7711039 7715194 L1P3 4156 + 5 4139 6347 222 15 0 15 5 19 58 2 1 262 17 18 65 2 1 268 6 0 4 34 0 26 0 13 162 0 3 9 1 0 226 7 0 782 0 1 102 1 0 82 1 2 64 1 0 219 7 0 67 5 8 182 11 15 77 0 1 114 0 4 395 3 2 99 0 1 14 0 1 273 0 10 213 2 0 9 2 1 24 chain 81246 chr18 80373285 + 7718026 7719182 L1PB2 3958 + 2682 3838 21378 24 2 1 9 7 8 22 9 8 167 0 3 383 2 0 56 1 0 11 1 0 65 5 3 9 4 0 58 1 15 16 2 0 77 1 0 62 1 0 61 0 1 12 2 0 21 4 3 61 chain 4455 chr18 80373285 + 7798188 7798244 L1MB2 1706 + 1638 1694 88579 56 chain 40320 chr18 80373285 + 7823431 7823938 MLT2A2 560 + 13 560 34434 319 6 35 32 3 14 147 chain 3176 chr18 80373285 + 7882244 7882282 MER5C 305 + 190 228 98133 38 chain 559999 chr18 80373285 + 7966445 7972474 L1PA2 6032 + 3 6032 173 6029 chain 17100 chr18 80373285 + 7995569 7995783 U3 216 + 0 214 59694 214 chain 5764 chr18 80373285 + 8073212 8073278 MER41B 635 + 481 547 82070 66 chain 19797 chr18 80373285 + 8186103 8186345 AluSc 308 + 58 299 56679 199 1 0 42 chain 19814 chr18 80373285 + 8209716 8209987 L1PA8 5853 + 5586 5853 56654 23 2 0 70 1 0 9 1 2 50 2 1 19 1 0 93 chain 4189 chr18 80373285 + 8266298 8266343 LTR12F 595 + 414 459 90206 45 chain 30921 chr18 80373285 + 8326228 8326814 L1PREC2 3366 + 2514 3046 41199 68 4 5 165 2 0 47 8 7 44 1 0 4 3 0 6 36 28 17 6 1 15 2 1 29 52 20 35 6 4 36 chain 3036 chr18 80373285 + 8465355 8465400 MSTB 430 + 0 46 99448 21 1 2 23 chain 26911 chr18 80373285 + 8488450 8488854 MSTA 426 + 0 426 46391 100 22 23 5 1 0 15 0 13 80 2 0 36 0 1 27 15 25 101 chain 6610 chr18 80373285 + 8494347 8494436 MLT1D-int 1367 + 0 86 78951 7 3 0 79 chain 237504 chr18 80373285 + 8530849 8534329 L1PA14 3548 + 91 3485 8535 11 5 3 37 8 6 69 1 0 20 2 1 23 17 15 19 10 8 52 22 14 240 1 0 340 25 15 293 8 10 40 0 2 180 1 14 12 5 9 371 72 28 45 4 1 203 0 1 37 5 1 229 9 5 92 1 0 24 4 8 124 0 1 233 13 12 14 2 0 42 6 3 7 2 0 10 14 10 78 19 15 13 2 0 6 1 0 84 1 0 7 7 17 87 1 0 10 5 1 36 4 2 12 5 3 18 1 0 44 7 0 7 1 0 20 chain 12890 chr18 80373285 + 8606673 8607341 MER44A 345 + 108 312 65272 42 482 15 16 0 3 128 chain 206904 chr18 80373285 + 8646438 8648924 L1P3 4156 + 7 2505 9469 244 2 1 67 2 1 78 1 5 879 4 1 483 0 4 116 0 3 268 0 5 297 1 2 44 chain 224232 chr18 80373285 + 8649358 8652023 L1PA7 6471 + 2499 6466 8919 142 1 0 22 0 2 35 0 1 153 0 1 60 0 1274 336 0 16 137 0 2 292 1 2 331 1 7 309 0 3 56 1 0 23 1 0 635 1 0 128 chain 15445 chr18 80373285 + 8794734 8794935 LTR24B 570 + 107 310 61729 55 0 2 20 0 4 6 4 0 116 chain 59275 chr18 80373285 + 8814962 8815628 L1PA3long 6157 + 5487 6157 26576 396 0 2 129 0 2 141 chain 6129 chr18 80373285 + 8867459 8867604 L1MB3 1562 + 1394 1516 80615 27 1 0 6 38 22 9 6 0 58 chain 36233 chr18 80373285 + 8876170 8876615 LTR10F 562 + 2 562 37251 114 0 115 331 chain 13264 chr18 80373285 + 8900003 8900178 MER41-int 2638 + 576 750 64686 98 1 0 76 chain 26965 chr18 80373285 + 8906670 8907018 L1PB1 5432 + 4714 5061 46316 91 2 1 255 chain 25634 chr18 80373285 + 8907622 8908363 MER41-int 2638 + 732 1126 48264 77 364 21 12 2 0 130 13 10 16 6 7 121 chain 40410 chr18 80373285 + 8913646 8914109 LTR2 463 + 0 463 34376 463 chain 422861 chr18 80373285 + 8915880 8920902 Harlequin-int 5206 + 125 5206 4841 19 2 1 161 1 0 36 1 2 26 4 0 84 0 1 28 5 0 43 0 1 12 3 7 27 0 1 108 1 0 516 7 10 451 0 2 316 0 58 277 8 9 646 0 1 330 4 0 390 0 1 875 0 1 641 chain 40849 chr18 80373285 + 8920902 8921365 LTR2 463 + 0 463 34060 463 chain 68773 chr18 80373285 + 8923164 8923913 L1PA3long 6157 + 5408 6157 24265 749 chain 26600 chr18 80373285 + 8933255 8933609 MER51B 395 + 0 395 46834 34 18 5 72 0 56 78 1 0 32 2 1 117 chain 8203 chr18 80373285 + 8950651 8950772 MLT1E1 597 + 464 581 74412 8 10 0 47 0 6 56 chain 29493 chr18 80373285 + 8954364 8954754 LTR7 482 + 0 476 42616 86 0 50 88 0 1 15 0 3 12 9 40 12 0 1 168 chain 5618 chr18 80373285 + 8985145 8985306 MER2 342 + 147 322 82714 60 83 97 18 chain 53794 chr18 80373285 + 9007542 9008168 L1PA5 6144 + 5518 6144 28287 382 2 1 105 0 1 137 chain 38142 chr18 80373285 + 9043145 9043680 MER1A 529 + 0 529 35958 17 1 2 61 17 12 72 3 0 293 2 0 5 9 12 55 chain 118390 chr18 80373285 + 9050180 9052062 THE1B-int 1605 + 0 1605 15821 430 0 25 24 31 43 108 17 18 36 0 1 9 16 15 677 3 4 136 316 0 79 chain 8739 chr18 80373285 + 9052062 9052168 THE1B 368 + 0 109 73121 31 0 3 75 chain 5312 chr18 80373285 + 9058157 9058253 LTR72B 493 + 351 454 84143 19 15 24 29 2 0 31 chain 52362 chr18 80373285 + 9093039 9093625 L1PA5 6144 + 5544 6130 28769 586 chain 34302 chr18 80373285 + 9113533 9113950 LTR2 463 + 0 463 38495 130 0 4 28 1 6 63 0 31 155 0 6 40 chain 517445 chr18 80373285 + 9264857 9270774 L1PA4 6152 + 1 6152 2403 97 0 217 421 1 0 137 0 2 116 1 0 50 0 2 17 0 2 353 2 7 1107 6 0 53 0 2 765 0 5 22 6 5 296 3 0 681 0 2 221 0 1 511 4 4 203 0 8 510 2 0 187 1 0 129 1 0 8 0 4 6 chain 8111 chr18 80373285 + 9297498 9297754 LTR12C 1709 + 700 1037 74615 18 14 214 80 119 0 25 chain 188321 chr18 80373285 + 9305069 9307864 L1PBa 3878 + 1261 3717 10194 191 324 0 118 0 2 33 31 9 533 5 9 278 9 4 7 0 5 257 0 3 512 3 0 43 1 2 101 1 0 299 0 1 49 chain 12710 chr18 80373285 + 9308129 9308400 L1PB1 5432 + 5168 5409 65603 52 2 1 16 14 5 39 1 0 15 4 1 16 8 0 14 10 7 12 2 0 24 2 1 20 1 0 13 1 0 5 chain 14198 chr18 80373285 + 9352961 9353255 Tigger3a 397 + 43 388 63324 32 15 64 136 76 78 35 chain 3236 chr18 80373285 + 9367741 9367790 MER1B 344 + 236 337 97604 25 2 54 22 chain 3625 chr18 80373285 + 9372071 9372130 L1MCa 1829 + 1597 1654 94215 24 9 7 26 chain 34448 chr18 80373285 + 9378202 9378671 L1PREC2 3366 + 2158 2625 38399 243 38 36 188 chain 29955 chr18 80373285 + 9385406 9385725 AluYb8 318 + 0 318 42098 123 1 0 195 chain 31692 chr18 80373285 + 9393969 9394504 L1MA5A 2387 + 1808 2292 40582 60 0 3 162 1 0 25 5 6 6 2 0 37 1 0 50 9 1 23 2 0 34 10 7 9 36 0 53 2 0 8 chain 38578 chr18 80373285 + 9402632 9403171 LTR12F 595 + 0 595 35658 91 21 16 26 0 82 25 18 0 115 4 0 7 0 1 232 chain 39847 chr18 80373285 + 9447126 9447630 LTR10G 522 + 20 522 34775 19 1 0 88 0 1 225 0 1 94 4 1 73 chain 3266 chr18 80373285 + 9493687 9493847 MER21A 919 + 26 76 97328 26 39 0 5 71 0 19 chain 8134 chr18 80373285 + 9499683 9499775 Tigger3a 397 + 204 296 74552 92 chain 76999 chr18 80373285 + 9502231 9503563 MER11A 1151 + 0 1151 22316 55 0 99 140 4 0 30 0 2 44 321 0 70 4 5 89 12 13 135 6 9 54 0 4 70 6 40 292 chain 4523 chr18 80373285 + 9556741 9556930 MER8 282 + 13 264 88193 36 20 67 21 85 101 20 1 0 6 chain 31309 chr18 80373285 + 9668173 9668638 LTR12F 595 + 0 588 40884 103 6 1 32 40 103 33 5 6 8 0 64 238 chain 30765 chr18 80373285 + 9696120 9696554 LTR46 455 + 0 455 41335 126 4 0 43 8 8 11 0 4 112 1 0 42 0 1 16 13 38 7 2 0 10 2 0 37 chain 25786 chr18 80373285 + 9724023 9724298 AluYa5 310 + 34 309 48038 275 chain 23174 chr18 80373285 + 9729251 9729540 AluY 311 + 6 296 52112 119 1 2 169 chain 7436 chr18 80373285 + 9788998 9789105 L1MA5 2750 + 2555 2659 76285 7 1 0 68 4 3 13 1 0 13 chain 108591 chr18 80373285 + 9794372 9796331 L1PB1 5432 + 3790 5387 17235 26 4 1 116 339 0 29 1 0 195 1 2 192 5 6 106 0 5 123 0 1 29 3 0 77 5 7 276 0 5 117 1 2 10 17 2 21 1 0 4 1 0 15 7 4 7 2 0 30 29 38 45 1 0 7 53 39 5 1 0 14 2 0 24 1 0 17 chain 50179 chr18 80373285 + 9903475 9904129 L1PA8 5853 + 5174 5853 29493 171 3 0 219 1 0 44 2 0 88 5 6 38 2 1 13 0 31 68 chain 6883 chr18 80373285 + 9923918 9924002 5S 121 + 0 90 78014 54 0 1 8 0 5 22 chain 12597 chr18 80373285 + 9946407 9946590 MER30 238 + 46 238 65801 62 6 0 12 2 17 101 chain 9352 chr18 80373285 + 9966682 9966843 MER47A 366 + 178 340 71811 108 33 34 20 chain 42724 chr18 80373285 + 9982029 9982522 MER9a1 513 + 15 513 32934 379 0 5 114 chain 11256 chr18 80373285 + 10024355 10024562 L1MB2 1706 + 1500 1693 68157 54 41 29 15 1 0 10 5 4 81 chain 22896 chr18 80373285 + 10091849 10092119 MER1A 529 + 245 514 52519 212 1 0 57 chain 29305 chr18 80373285 + 10251323 10251640 AluYb8 318 + 0 318 42884 147 0 1 170 chain 141043 chr18 80373285 + 10256513 10258563 L1PA8 5853 + 4049 5841 13022 10 0 4 151 5 6 120 1 0 375 6 7 55 0 6 216 8 10 336 3 0 219 1 0 46 2 0 64 35 33 33 3 2 9 262 0 9 1 0 54 1 2 25 chain 22542 chr18 80373285 + 10341279 10341644 THE1B 368 + 0 358 53055 15 2 0 32 0 1 57 29 30 34 30 23 84 1 2 15 1 0 65 chain 58786 chr18 80373285 + 10538870 10539678 L1PA8 5853 + 5053 5853 26742 12 13 19 61 0 5 224 24 16 174 1 0 21 4 0 24 2 0 70 1 0 14 1 0 47 2 1 19 1 0 93 chain 40410 chr18 80373285 + 10606315 10606778 LTR2 463 + 0 463 34375 463 chain 57609 chr18 80373285 + 10648929 10649999 L1PA13 3608 + 89 1119 27080 20 6 4 23 22 19 8 1 0 14 3 0 13 1 3 9 31 16 71 7 5 103 20 19 11 1 0 8 2 0 10 2 0 16 7 3 17 1 0 17 2 0 15 23 19 11 0 1 7 8 7 69 6 4 67 13 0 8 19 37 127 14 13 52 5 4 180 chain 515210 chr18 80373285 + 10650018 10656106 L1PA5 6144 + 0 6137 2506 19 0 1 101 0 14 448 0 10 29 0 4 23 0 8 23 0 3 109 18 36 10 1 0 237 1 4 90 9 0 240 0 5 19 1 0 308 1 0 572 9 1 606 0 1 682 0 1 83 6 0 377 1 3 274 0 4 926 0 4 19 1 0 597 1 0 104 5 4 138 chain 21720 chr18 80373285 + 10675685 10676055 THE1B 368 + 0 368 54205 78 22 23 12 0 1 5 8 0 50 1 0 20 18 25 14 6 5 9 1 0 126 chain 25734 chr18 80373285 + 10699290 10699645 THE1B 368 + 0 368 48117 24 1 5 15 0 15 109 1 0 23 7 3 92 2 1 81 chain 9603 chr18 80373285 + 10897536 10897699 THE1B 368 + 195 368 71261 5 1 0 13 18 30 61 2 0 6 1 2 56 chain 4076 chr18 80373285 + 10908973 10909050 MER58A 224 + 27 116 90920 42 10 24 7 2 0 16 chain 83803 chr18 80373285 + 10921288 10922328 MER11C 1089 + 0 1063 20848 225 0 5 16 0 9 58 0 4 68 1 0 303 0 4 45 0 1 127 7 8 190 chain 48886 chr18 80373285 + 10939329 10939933 L1PA8 5853 + 5256 5853 29987 308 2 1 43 2 0 72 1 0 14 5 4 45 1 0 17 1 0 93 chain 5574 chr18 80373285 + 10946803 10946934 L1MDb 1215 + 721 851 82912 23 53 52 55 chain 415179 chr18 80373285 + 11058121 11062790 L1PA4 6152 + 804 5521 4955 173 0 14 17 0 12 23 12 14 429 0 19 1658 0 1 446 0 1 161 0 1 732 2 0 1016 chain 30618 chr18 80373285 + 11127308 11127695 MLT2A1 477 + 0 395 41450 142 0 1 19 0 11 212 4 0 10 chain 450063 chr18 80373285 + 11127865 11133402 HERVL-int 5654 + 0 5654 4391 432 0 1 271 7 8 661 0 46 305 6 8 218 0 1 850 52 47 114 1 10 85 0 1 153 3 4 95 4 5 629 0 4 144 0 12 436 19 17 338 0 3 119 20 50 275 11 10 60 0 5 124 0 1 4 1 0 22 2 0 31 0 10 45 chain 30021 chr18 80373285 + 11133402 11133823 MLT2A1 477 + 0 407 42031 92 7 0 50 0 1 25 1 5 211 7 1 8 6 0 14 chain 32533 chr18 80373285 + 11248288 11248769 LTR12F 595 + 0 571 39921 103 12 113 30 4 3 9 23 5 59 1 2 85 7 14 148 chain 4314 chr18 80373285 + 11273975 11274037 LTR62 707 + 358 419 89407 37 3 2 22 chain 17515 chr18 80373285 + 11275654 11275850 L1PA4 6152 + 5949 6146 59226 71 0 1 125 chain 7756 chr18 80373285 + 11320081 11320170 AluSx4 309 + 41 130 75470 89 chain 120872 chr18 80373285 + 11344043 11345457 SVA_B 1603 + 0 1603 15365 22 8 27 580 1 9 34 0 40 112 0 124 649 2 0 6 chain 358372 chr18 80373285 + 11349734 11354807 L1PB1 5432 + 17 5061 5819 9 6 0 215 2 0 9 25 43 16 7 6 130 2 0 15 81 21 86 1 0 5 0 1 37 1 5 39 8 9 103 4 3 467 1 3 89 24 25 27 31 31 208 0 5 215 0 4 21 2 1 9 0 1 152 0 1 43 9 10 65 0 1 242 28 7 101 1 2 108 0 1 208 22 19 312 0 1 338 0 5 59 9 8 161 12 13 22 6 7 260 0 1 41 0 1 30 13 14 56 0 4 20 1 2 16 0 1 414 0 1 190 2 1 179 0 11 58 chain 18929 chr18 80373285 + 11420196 11420425 L1PA5 6144 + 5892 6140 57616 35 0 9 59 0 10 11 0 1 109 1 0 14 chain 45021 chr18 80373285 + 11450415 11451067 L1PA16 3655 + 2931 3587 31573 37 16 18 76 0 6 56 4 3 77 1 0 87 2 0 18 6 8 194 0 1 67 3 0 8 chain 19648 chr18 80373285 + 11596498 11596720 AluY 311 + 64 285 56857 59 1 0 162 chain 11399 chr18 80373285 + 11600838 11600976 L1PREC2 3366 + 2358 2496 67915 138 chain 62957 chr18 80373285 + 11608717 11609425 SVA_C 1631 + 913 1622 25641 37 1 0 52 1 2 209 1 2 407 chain 13341 chr18 80373285 + 11611472 11611653 MER2 342 + 156 338 64565 138 5 6 38 chain 3478 chr18 80373285 + 11613222 11613337 SVA_F 1814 + 434 548 95388 28 60 59 27 chain 5922 chr18 80373285 + 11613526 11613754 SVA_B 1603 + 784 1053 78302 10 3 0 16 22 187 30 118 0 4 3 0 22 chain 60247 chr18 80373285 + 11613754 11614796 SVA_B 1603 + 423 1387 26309 98 2 0 228 14 11 12 11 14 7 2 0 32 118 4 36 32 82 19 8 48 53 34 0 33 20 4 31 0 5 2 5 0 245 chain 2859 chr18 80373285 + 11614426 11614460 SVA_B 1603 + 749 783 80885 34 chain 3247 chr18 80373285 + 11644160 11644194 MER83B 357 + 97 131 97502 34 chain 13341 chr18 80373285 + 11645691 11645872 MER2 342 + 156 338 64564 138 5 6 38 chain 53263 chr18 80373285 + 11647353 11648518 SVA_B 1603 + 423 1387 28480 14 0 3 6 0 39 36 39 0 20 0 40 53 4 0 11 80 1 107 12 10 59 12 136 74 196 0 35 71 0 33 20 4 32 6 6 245 chain 12872 chr18 80373285 + 11878965 11879109 L1PA5 6144 + 5993 6137 65301 144 chain 13861 chr18 80373285 + 11903836 11904042 MER50B 698 + 460 666 63782 21 3 2 60 1 3 66 6 5 49 chain 13626 chr18 80373285 + 11924491 11924769 Tigger3 1187 + 623 906 64128 39 88 90 46 1 0 54 0 3 43 0 1 7 chain 37299 chr18 80373285 + 11941666 11942107 MER41A 554 + 0 441 36548 441 chain 41738 chr18 80373285 + 11956639 11957183 LTR10A 586 + 0 586 33527 210 0 30 18 30 42 286 chain 135387 chr18 80373285 + 11959059 11960660 SVA_D 2077 + 46 2077 13504 6 1 0 5 3 0 411 76 0 449 0 489 517 0 20 86 0 1 47 chain 12541 chr18 80373285 + 12112133 12112327 L1PA13 3608 + 3281 3467 65916 55 1 0 51 1 0 5 6 4 48 2 0 4 2 0 19 chain 553136 chr18 80373285 + 12181637 12187771 L1PA3long 6157 + 1 6149 540 5 3 0 467 0 4 568 0 1 436 1 0 1653 0 4 1189 0 4 21 0 4 132 0 1 1659 chain 104887 chr18 80373285 + 12242929 12244176 SVA_A 1864 + 10 1864 17703 164 4 3 232 0 566 151 21 60 108 0 3 567 chain 40657 chr18 80373285 + 12249822 12250282 L1PA3long 6157 + 5439 5898 34182 208 0 1 68 1 0 93 0 3 35 4 0 51 chain 24076 chr18 80373285 + 12250282 12250540 L1PA3long 6157 + 5899 6157 50691 258 chain 4428 chr18 80373285 + 12297371 12297422 HSMAR2 1300 + 276 327 88750 51 chain 10522 chr18 80373285 + 12349147 12349491 L1MB7 1623 + 1108 1428 69374 59 70 58 11 23 12 16 40 39 20 1 0 14 1 0 15 21 24 47 1 0 5 chain 18465 chr18 80373285 + 12381033 12381271 AluSp 311 + 17 256 58137 22 18 19 198 chain 25069 chr18 80373285 + 12539157 12539504 THE1B 368 + 0 368 49169 44 0 15 115 1 0 128 22 29 37 chain 33832 chr18 80373285 + 12552467 12552903 LTR2 463 + 0 463 38824 55 1 4 103 9 29 169 11 15 88 chain 28304 chr18 80373285 + 12554831 12555219 LOR1a 498 + 47 430 44403 104 0 2 48 8 7 4 0 1 107 0 1 35 0 1 34 1 0 32 8 0 7 chain 134685 chr18 80373285 + 12555363 12560558 L1MA3 4352 + 1776 4053 13571 537 1 0 24 15 10 19 0 4 125 0 3 18 0 7 61 2 0 77 1 0 66 1 0 79 3255 315 130 16 21 66 1 2 56 6 7 123 1 6 33 0 4 115 19 21 348 chain 4791 chr18 80373285 + 12565194 12565264 L1MCa 1829 + 1244 1317 86740 39 7 10 24 chain 3069 chr18 80373285 + 12574056 12574230 L1MC2 1988 + 1848 1988 99104 17 126 92 31 chain 3265 chr18 80373285 + 12607780 12607869 L1MA3 4352 + 4220 4310 97331 16 26 27 17 1 2 6 1 0 22 chain 17332 chr18 80373285 + 12642682 12642931 L1PA8 5853 + 5609 5853 59422 70 1 0 9 10 8 44 2 1 19 1 0 93 chain 41275 chr18 80373285 + 12728045 12728640 L1PB2 3958 + 3239 3838 33805 22 0 4 37 4 5 53 0 3 8 1 0 23 0 1 43 2 0 13 2 0 31 13 17 46 4 2 71 1 0 56 0 1 5 1 0 95 1 0 63 chain 8169 chr18 80373285 + 12760716 12760812 HY3 101 + 0 96 74487 96 chain 9966 chr18 80373285 + 12762789 12762938 MER4A1_ 611 + 428 576 70494 90 0 1 17 19 17 23 chain 21421 chr18 80373285 + 12808506 12808783 AluSc8 310 + 8 291 54611 122 13 15 107 0 4 35 chain 170624 chr18 80373285 + 12873245 12875324 SVA_D 2077 + 0 2077 11075 14 0 3 14 11 0 563 0 40 128 40 0 154 9 46 72 8 10 129 0 20 31 0 1 109 51 0 54 0 1 4 9 8 365 1 0 304 2 0 7 chain 4279 chr18 80373285 + 12874527 12874578 SVA_D 2077 + 1029 1080 68685 20 1 0 4 0 1 26 chain 6461 chr18 80373285 + 12890555 12890699 LTR41 747 + 0 147 79478 20 40 42 66 6 7 12 chain 73833 chr18 80373285 + 12919276 12921088 L1PB1 5432 + 4305 5419 23136 80 316 0 96 0 1 89 0 1 42 10 7 32 1 0 102 13 0 16 0 3 28 6 5 72 0 1 91 1 2 10 1 2 118 64 15 20 4 3 5 1 0 10 2 0 3 2 0 10 3 1 50 2 1 15 1 0 39 6 5 13 17 4 30 307 13 8 2 0 22 1 0 22 1 0 12 3 2 13 chain 3580 chr18 80373285 + 12939121 12939170 MLT1B 390 + 322 372 94588 18 1 2 30 chain 10213 chr18 80373285 + 13067095 13067256 MER2 342 + 81 249 69986 28 1 0 25 0 1 48 18 25 41 chain 8332 chr18 80373285 + 13075576 13075712 MLT1A1 405 + 256 403 74080 22 8 17 18 0 1 53 8 9 27 chain 3382 chr18 80373285 + 13077337 13077377 Tigger4a 237 - 188 228 96278 40 chain 391272 chr18 80373285 + 13166247 13172252 L1PB1 5432 + 22 5422 5300 117 0 1 158 7 6 196 4 5 47 0 1 259 10 7 497 0 5 69 5 6 7 5 0 6 0 1 469 0 1 41 12 33 101 0 2 238 322 0 20 4 5 25 3 0 30 0 4 71 1 0 4 0 1 44 2 0 29 4 0 10 0 5 17 10 8 22 0 5 241 18 14 279 0 1 21 6 0 48 0 1 184 1 0 4 9 11 93 0 1 105 1 4 81 5 0 6 4 9 29 1 0 5 8 0 319 5 6 273 0 1 294 5 2 128 297 15 27 1 0 5 1 7 7 8 0 110 0 9 169 0 1 8 6 3 22 3 2 4 1 0 11 8 4 9 2 0 44 24 25 44 1 0 5 60 49 11 2 0 6 0 1 8 0 1 8 1 0 21 1 0 31 chain 16332 chr18 80373285 + 13174183 13174438 MER87B 500 + 8 238 60595 197 45 20 13 chain 146841 chr18 80373285 + 13209811 13211519 L1PA5 6144 + 4402 6144 12552 20 1 0 389 0 37 297 0 1 237 1 0 162 10 8 591 chain 5386 chr18 80373285 + 13257682 13257773 MER20 218 + 40 129 83764 43 4 0 6 8 10 30 chain 23755 chr18 80373285 + 13315511 13315804 AluSp 311 + 0 302 51187 20 1 10 272 chain 63539 chr18 80373285 + 13351572 13352328 L1PA8 5853 + 3148 3908 25517 43 0 4 713 chain 13945 chr18 80373285 + 13444357 13444538 Tigger2b_Pri 1066 + 819 1002 63683 16 1 0 5 0 3 159 chain 66605 chr18 80373285 + 13468277 13469011 L1PA4 6152 + 5418 6152 24795 734 chain 4482 chr18 80373285 + 13469078 13469249 L1MB4 1306 + 723 892 88428 26 14 0 8 36 51 4 1 0 32 26 25 18 1 0 5 chain 16608 chr18 80373285 + 13506578 13506788 Tigger1 2417 + 908 1123 60259 131 0 5 79 chain 46143 chr18 80373285 + 13656681 13657197 HERV17-int 4347 + 3828 4347 30989 333 0 3 183 chain 27747 chr18 80373285 + 13657511 13657838 LTR17 781 + 0 326 45253 39 2 0 165 0 1 121 chain 7469 chr18 80373285 + 13671170 13671284 LTR9B 643 + 451 562 76202 61 0 7 6 11 1 36 chain 6818 chr18 80373285 + 13687994 13688119 LTR59 565 + 153 259 78250 37 7 8 8 20 0 53 chain 498515 chr18 80373285 + 13689803 13695693 L1PA5 6144 + 0 5963 3183 135 9 35 151 0 3 668 0 1 61 4 7 85 0 2 21 9 0 266 13 5 7 0 8 379 0 4 468 2 0 35 1 6 274 9 5 225 0 7 143 0 1 174 1 0 310 0 4 518 0 12 4 0 1 235 2 1 17 0 8 245 3 6 48 0 6 702 1 5 665 chain 181320 chr18 80373285 + 13704741 13707617 MER57-int 2662 + 103 2661 10533 5 0 1 29 0 2 23 0 3 21 0 2 5 0 3 69 0 2 16 1 7 22 3 1 178 0 1 191 9 5 160 316 7 206 0 21 286 0 2 33 1 0 41 8 0 190 1 4 270 3 0 29 2 1 379 15 14 7 0 5 65 0 1 4 1 0 10 18 12 37 5 0 31 14 2 11 2 0 20 26 22 24 1 0 6 14 9 27 3 0 31 2 0 5 chain 100722 chr18 80373285 + 13750873 13752102 L1PA6 6164 + 4912 6137 18213 260 13 7 133 0 4 80 4 5 323 1 0 13 9 9 251 2 0 140 chain 6821 chr18 80373285 + 13772016 13772096 MSTB1 431 + 334 414 78235 80 chain 6447 chr18 80373285 + 13805361 13805438 L1PA16 3655 + 3465 3542 79528 77 chain 30076 chr18 80373285 + 13808589 13809107 MER4A1_ 611 + 0 611 41983 125 0 4 39 97 18 33 0 148 13 18 36 53 0 2 140 chain 45545 chr18 80373285 + 13835896 13836394 L1HS 6032 + 5535 6032 31287 129 1 0 368 chain 227726 chr18 80373285 + 13899659 13903009 L1MA1 4479 + 290 4172 8819 63 1 2 28 5 7 5 2 0 255 1 9 9 4 0 40 8 10 26 0 1 198 0 2 6 0 3 5 10 4 32 1 12 118 0 1 162 4 8 74 0 2 38 0 1 195 1 0 4 0 1 198 0 4 14 2 5 14 2 1 142 6 5 96 2 0 140 9 18 354 1 0 24 38 27 15 1 0 49 2 1 34 13 6 10 0 3 5 7 3 26 1 0 6 0 1 35 10 11 8 2 0 66 0 536 48 1 0 132 1 0 63 7 6 22 2 0 16 15 14 56 2 1 12 0 1 5 3 1 14 1 0 88 1 0 5 3 0 41 0 1 79 6 5 30 2 0 34 1 0 9 1 0 6 4 2 13 chain 112392 chr18 80373285 + 13904577 13906540 L1PA8A 6298 + 4893 6291 16764 56 30 0 8 3 0 116 0 1 37 2 0 25 1 0 34 5 17 217 5 6 8 1 0 71 1 4 11 0 1 75 213 0 265 333 0 446 chain 18837 chr18 80373285 + 13998258 13998498 THE1A 353 + 110 353 57730 99 9 10 80 0 2 52 chain 509891 chr18 80373285 + 14064991 14070832 L1PA5 6144 + 0 5872 2778 120 2 1 284 1 0 180 0 1 115 1 2 310 1 0 28 1 0 4 0 1 2111 3 1 305 0 1 1180 0 1 355 0 1 100 2 1 45 0 31 109 0 1 584 chain 11807 chr18 80373285 + 14121958 14122144 MER30B 195 + 5 190 67192 10 4 0 16 0 1 35 8 10 15 0 3 53 3 0 42 chain 364632 chr18 80373285 + 14162672 14167004 L1P1 4361 + 6 4341 5738 314 0 7 843 9 0 86 0 1 388 1 4 55 1 0 236 2 1 63 3 0 180 0 1 1010 0 1 56 0 5 150 2 1 50 8 9 209 0 2 472 1 0 155 1 0 23 2 1 12 chain 7212 chr18 80373285 + 14222422 14222576 SVA_A 1864 + 1080 1264 63723 17 13 46 57 8 5 59 chain 114357 chr18 80373285 + 14222576 14225651 SVA_A 1864 + 403 1863 16495 130 38 1 46 873 0 33 3 0 151 9 8 105 2 0 8 1 0 172 189 0 86 1 0 61 150 0 7 152 0 97 228 0 402 0 22 131 chain 5648 chr18 80373285 + 14223248 14223499 SVA_F 1814 + 553 807 82570 34 18 17 36 135 141 21 2 0 5 chain 3633 chr18 80373285 + 14223571 14223616 SVA_A 1864 + 483 528 94162 45 chain 2315 chr18 80373285 + 14223616 14223644 SVA_A 1864 + 531 559 92824 28 chain 3430 chr18 80373285 + 14224147 14224223 SVA_A 1864 + 836 911 43289 49 1 0 26 chain 4427 chr18 80373285 + 14224223 14224321 SVA_A 1864 + 1096 1152 58501 2 3 1 44 40 0 9 chain 1858 chr18 80373285 + 14224272 14224301 SVA_A 1864 + 995 1024 62919 29 chain 2054 chr18 80373285 + 14224484 14224521 SVA_A 1864 + 836 873 46297 37 chain 3430 chr18 80373285 + 14224521 14224597 SVA_A 1864 + 983 1057 43289 41 3 1 32 chain 2054 chr18 80373285 + 14224597 14224634 SVA_A 1864 + 946 983 46297 37 chain 3430 chr18 80373285 + 14224641 14224717 SVA_A 1864 + 1064 1138 43289 34 2 0 40 chain 1093 chr18 80373285 + 14224726 14224780 SVA_A 1864 + 778 832 58037 54 chain 1198 chr18 80373285 + 14224890 14224938 SVA_A 1864 + 1013 1059 53178 9 5 3 34 chain 5608 chr18 80373285 + 14224981 14225049 SVA_A 1864 + 805 873 82771 68 chain 3024 chr18 80373285 + 14255677 14255711 MSTA 426 + 143 177 99553 34 chain 3709 chr18 80373285 + 14281023 14281067 MSTA-int 1630 + 1567 1611 93555 44 chain 2866 chr18 80373285 + 14294639 14294698 MSTA-int 1630 + 1490 1548 101095 16 16 15 27 chain 4407 chr18 80373285 + 14295320 14295524 MSTA 426 + 156 366 88860 31 135 141 38 chain 3330 chr18 80373285 + 14310982 14311046 MSTA-int 1630 + 1490 1553 96768 16 16 15 32 chain 3330 chr18 80373285 + 14330288 14330352 MSTA-int 1630 + 1490 1553 96767 16 16 15 32 chain 6181 chr18 80373285 + 14339647 14339845 LTR16C 481 + 207 407 80420 29 3 5 19 100 100 47 chain 16859 chr18 80373285 + 14363225 14363434 L1PA6 6164 + 5952 6161 59963 209 chain 24117 chr18 80373285 + 14371296 14371595 L1PA7 6471 + 6163 6462 50622 299 chain 96603 chr18 80373285 + 14500150 14505949 L1PA7 6471 + 2277 6342 18703 355 13 0 51 4 5 32 4382 2649 220 4 5 27 1 0 48 0 1 35 6 14 589 1 3 31 chain 89458 chr18 80373285 + 14575804 14576801 L1PA3long 6157 + 5144 6157 19764 78 0 1 12 0 9 753 0 6 154 chain 41939 chr18 80373285 + 14616319 14617195 HERVIP10F-int 4088 + 2465 3366 33401 221 0 28 268 27 24 25 130 165 7 1 0 17 9 5 17 25 21 12 2 1 8 3 0 5 1 0 4 15 9 13 47 33 14 1 0 4 chain 25208 chr18 80373285 + 14717313 14717623 L1PA7 6471 + 6088 6407 48932 48 0 1 24 0 7 139 4 5 95 chain 3321 chr18 80373285 + 14727424 14727547 MER6B 211 + 33 157 96838 21 71 72 31 chain 26282 chr18 80373285 + 14785793 14786071 AluYb8 318 + 37 315 47301 278 chain 6216 chr18 80373285 + 14918960 14919046 MSTD 398 + 237 323 80291 11 0 3 5 3 0 67 chain 3896 chr18 80373285 + 14938094 14938251 LTR34 700 + 517 694 92161 22 8 6 14 79 101 34 chain 93146 chr18 80373285 + 14982369 14984145 L1PB 1623 + 117 1585 19164 52 4 1 18 7 4 74 8 7 99 2 0 24 1 0 72 28 7 514 0 1 307 315 78 37 3 2 22 143 108 10 3 0 21 2 0 10 chain 4287 chr18 80373285 + 15010361 15010410 Tigger3c 601 + 315 364 89593 49 chain 424149 chr18 80373285 + 15039598 15045218 HERVL-int 5654 + 0 5640 4826 55 24 25 45 0 1 379 0 1 80 0 1 5 2 1 291 18 19 36 0 1 21 1 2 155 1 0 87 3 0 148 0 1 210 0 1 6 4 3 29 0 4 146 0 1 4 3 9 265 2 4 9 0 2 25 22 23 469 2 11 25 21 7 96 1 0 170 9 1 99 6 0 472 9 2 265 0 9 459 1 0 6 0 1 308 7 22 761 0 3 97 0 1 46 0 1 9 1 0 205 chain 28303 chr18 80373285 + 15099377 15099797 L1PA8 5853 + 5435 5850 44404 42 0 1 64 1 0 4 5 6 12 1 0 18 0 1 26 5 3 66 20 18 44 2 1 19 1 0 90 chain 18245 chr18 80373285 + 15103619 15103868 L1PA10 4194 + 3917 4161 58417 165 2 1 33 3 0 34 1 0 11 chain 26819 chr18 80373285 + 15122514 15122872 LTR12D 1347 + 1001 1347 46513 18 6 4 23 14 5 31 1 0 265 chain 280322 chr18 80373285 + 15188475 15191660 L1PA3long 6157 + 2975 6152 7412 332 1 2 379 2 1 622 1 0 504 5 0 576 1 0 623 0 1 25 0 3 16 10 5 88 chain 17916 chr18 80373285 + 15212336 15212612 THE1B 368 + 6 306 58738 38 0 15 110 1 0 29 35 45 63 chain 67901 chr18 80373285 + 15214706 15215450 L1HS 6032 + 5281 6025 24471 744 chain 157701 chr18 80373285 + 15218950 15220697 L1PA2 6032 + 2315 4062 11900 1747 chain 29001 chr18 80373285 + 15286266 15286593 L1PA2 6032 + 5705 6032 43315 327 chain 82697 chr18 80373285 + 15287453 15288470 MER11C 1089 + 24 1059 21085 222 0 9 62 0 4 63 2 1 169 0 1 135 0 4 43 0 1 321 chain 39020 chr18 80373285 + 15298417 15298914 L1P3 4156 + 3609 4107 35343 116 0 1 381 chain 224082 chr18 80373285 + 15372570 15375053 L1PA3long 6157 + 3672 6155 8927 2483 chain 22444 chr18 80373285 + 15391156 15391432 L1P1 4361 + 4051 4325 53207 100 2 1 153 1 0 20 chain 92543 chr18 80373285 + 15397502 15398546 L1PA3long 6157 + 4307 5352 19267 999 0 1 45 chain 125898 chr18 80373285 + 15780477 15781849 L1HS 6032 + 4661 6032 14575 1226 1 0 145 chain 23812 chr18 80373285 + 18504859 18505121 L1PA3long 6157 + 5757 6019 51083 262 chain 53862 chr18 80373285 + 20751564 20752178 L1HS 6032 + 5418 6032 28266 466 1 0 120 1 2 26 chain 54860 chr18 80373285 + 20819129 20819743 L1HS 6032 + 5418 6032 27921 614 chain 114933 chr18 80373285 + 20941240 20942733 THE1B-int 1605 + 0 1559 16397 12 4 6 408 0 25 119 1 11 93 1 4 22 10 12 194 0 3 91 0 2 38 8 25 125 0 2 367 chain 28122 chr18 80373285 + 20952802 20953133 L1PA7 6471 + 6139 6468 44680 322 2 0 7 chain 8760 chr18 80373285 + 21003737 21003902 Tigger4a 237 + 21 212 73083 8 1 0 48 10 42 30 4 0 15 13 12 36 chain 5476 chr18 80373285 + 21078411 21078508 LTR9B 643 + 5 121 83323 43 4 1 8 1 0 11 6 29 24 chain 29688 chr18 80373285 + 21192371 21193075 L1PB2 3958 + 3451 3830 42381 105 0 3 58 1 0 62 324 0 74 2 0 22 1 0 55 chain 17207 chr18 80373285 + 21205299 21205495 L1PA5 6144 + 5937 6140 59567 62 0 7 134 chain 8535 chr18 80373285 + 21408394 21408505 L1MB7 1623 + 1056 1169 73610 16 1 0 72 0 3 22 chain 10911 chr18 80373285 + 21534194 21534337 MER85 139 + 0 139 68680 107 2 1 11 3 0 20 chain 5857 chr18 80373285 + 21588372 21588444 MER41B 635 + 481 554 81664 26 0 1 46 chain 3459 chr18 80373285 + 21596290 21596338 Charlie1b 519 + 466 514 95554 17 0 1 6 1 0 24 chain 2938 chr18 80373285 + 21646459 21646490 MER112 246 + 0 31 100526 31 chain 3125 chr18 80373285 + 21676327 21676367 L1MA8 2339 + 2299 2339 98576 40 chain 4672 chr18 80373285 + 21695617 21695668 MADE1 96 + 45 96 87434 51 chain 22766 chr18 80373285 + 21706983 21707683 LTR12C 1709 + 771 1514 52725 62 0 40 195 2 17 6 0 1 16 315 333 22 62 31 20 chain 217524 chr18 80373285 + 21715139 21718374 L1PB1 5432 + 77 5416 9109 67 0 1 266 3 0 156 0 3 38 0 1 36 0 1 757 3 0 90 3 0 1 302 0 90 0 2429 55 3 1 21 0 1 112 1 3 37 5 14 369 4 0 76 0 1 108 4 5 163 0 3 154 1 0 11 17 12 8 2 0 11 0 2 40 18 16 45 1 0 15 3 0 6 16 6 19 2 0 5 1 0 14 2 0 19 7 5 21 1 0 13 1 0 12 chain 7415 chr18 80373285 + 21724127 21724227 HY3 101 + 9 100 76358 41 9 0 50 chain 217599 chr18 80373285 + 21735094 21738525 L1P2 5180 + 3 3090 9106 142 48 66 28 325 122 30 19 18 37 19 0 17 0 1 19 35 24 8 1 0 47 88 12 164 21 0 38 7 22 161 9 23 58 4 5 4 1 0 223 0 1 4 5 4 431 0 1 50 16 0 216 0 3 48 0 1 562 0 2 131 57 5 299 0 1 59 chain 4417 chr18 80373285 + 21738111 21738164 L1P2 5180 - 3033 3086 88794 53 chain 5412 chr18 80373285 + 21772431 21772582 Tigger4a 237 + 46 179 83647 12 37 13 33 15 0 15 4 25 35 chain 77481 chr18 80373285 + 21784425 21785421 LTR13_ 950 + 0 950 22198 91 9 0 509 17 6 62 2 1 35 27 2 244 chain 25232 chr18 80373285 + 21796207 21796562 L1PA8 5853 + 5508 5853 48894 7 1 0 49 1 0 25 0 1 18 2 0 67 5 4 9 1 2 45 5 0 5 2 1 19 1 0 93 chain 11791 chr18 80373285 + 21856558 21856726 L1PA8 5853 + 5687 5853 67231 53 2 1 19 2 1 92 chain 13528 chr18 80373285 + 21874574 21874757 L1MA4 2864 + 363 550 64278 38 1 0 57 5 10 82 chain 8313 chr18 80373285 + 21879800 21879901 U6 107 + 0 104 74126 44 0 3 57 chain 5329 chr18 80373285 + 21931537 21931602 MIR 256 + 66 132 84056 55 0 1 10 chain 7357 chr18 80373285 + 21946899 21947046 MSTD 398 + 0 149 76506 21 46 48 80 chain 180676 chr18 80373285 + 21953082 21955529 L1PA7 6471 + 3597 6094 10556 242 0 1 169 3 1 195 17 4 153 0 1 358 0 4 49 27 32 62 4 9 72 6 0 356 2 0 31 12 13 66 0 1 207 11 20 51 5 9 127 0 3 85 0 39 137 chain 10456 chr18 80373285 + 22040163 22040509 MER30 238 + 40 236 69507 56 209 59 81 chain 17784 chr18 80373285 + 22312277 22312524 L1PB2 3958 + 3595 3838 58912 86 2 1 70 2 0 17 7 6 63 chain 42630 chr18 80373285 + 22406197 22406713 L1P3 4156 + 665 1181 32983 516 chain 24754 chr18 80373285 + 22406713 22407017 L1PA7 6471 + 6151 6464 49652 72 4 12 80 0 1 148 chain 19751 chr18 80373285 + 22420502 22420768 THE1C 375 + 72 344 56730 55 8 12 42 1 3 160 chain 551671 chr18 80373285 + 22529636 22535664 L1PA2 6032 + 0 6025 626 257 1 0 637 1 0 4972 1 6 6 5 0 134 1 0 13 chain 468096 chr18 80373285 + 22616935 22622356 L1PA6 6164 + 0 6162 3906 88 0 735 71 0 1 1439 14 0 855 0 1 340 2 1 650 0 1 181 1 5 109 4 0 84 1 0 435 2 0 319 0 5 298 0 9 66 0 1 6 0 6 456 chain 6193 chr18 80373285 + 22641057 22641132 MER2 342 + 141 216 80380 75 chain 13200 chr18 80373285 + 22645365 22645535 Tigger2b_Pri 1066 + 827 1002 64780 71 0 5 99 chain 201061 chr18 80373285 + 22660278 22662492 L1PA3long 6157 + 3940 6157 9684 143 1 0 274 0 4 1796 chain 27283 chr18 80373285 + 22669366 22669674 AluYk4 311 + 0 308 45849 308 chain 258016 chr18 80373285 + 22719811 22722649 L1PA3long 6157 + 3314 6152 8023 204 0 2 563 1 0 1224 1 0 845 chain 208542 chr18 80373285 + 22724872 22727836 Charlie3 2679 + 18 2674 9398 16 8 7 1045 310 0 36 0 1 855 7 0 99 0 2 23 0 1 157 1 2 160 2 3 118 0 11 43 21 14 63 chain 19257 chr18 80373285 + 22727871 22728084 L1PA2 6032 + 5819 6032 57282 213 chain 50342 chr18 80373285 + 22744259 22744805 L1PA3long 6157 + 5086 5632 29437 546 chain 118867 chr18 80373285 + 22748312 22749834 L1P3 4156 + 0 1516 15733 251 2 1 68 21 15 72 18 0 259 0 3 122 1 2 40 0 14 121 0 1 547 chain 321151 chr18 80373285 + 22760673 22764535 L1PA7 6471 + 2588 6470 6381 45 3 4 190 0 1 265 0 7 900 10 2 62 2 0 558 6 12 34 0 4 129 0 1 152 0 1 357 0 1 17 2 3 281 0 3 83 0 2 453 0 1 4 3 2 37 0 4 162 3 1 104 chain 29898 chr18 80373285 + 22764540 22764960 L1PA8 5853 + 5441 5853 42138 73 2 1 7 0 1 41 1 0 44 2 0 52 3 4 15 1 0 14 1 0 47 2 1 19 2 1 39 2 0 53 chain 130664 chr18 80373285 + 22768307 22771814 L1MA1 4479 + 2237 4188 13958 22 6 5 111 7 11 49 5 6 17 1 0 5 1 2 15 0 4 25 1 2 5 1 0 86 1 0 65 2 1 83 4 0 7 0 4 9 2 0 33 1 0 58 7 4 88 0 4 27 2 0 170 2 1 43 0 1 51 1 0 12 5 0 26 0 1 72 1530 0 27 3 0 128 3 1 89 0 5 55 0 1 47 1 0 24 3 0 16 1 0 71 1 0 8 8 6 19 1 0 88 1 0 5 3 0 93 1 2 31 1 0 28 3 1 35 1 0 9 1 0 11 18 11 15 chain 50200 chr18 80373285 + 22828518 22829070 L1PA4 6152 + 5589 6143 29485 244 0 1 95 0 1 213 chain 545249 chr18 80373285 + 22885395 22891511 L1PA5 6144 + 3 6132 1022 464 2 3 396 0 2 540 2 7 1083 0 6 1638 2 0 1780 0 1 209 chain 20889 chr18 80373285 + 22893869 22894150 L1PA7 6471 + 4955 5212 55269 136 22 0 56 1 0 61 1 0 4 chain 34862 chr18 80373285 + 22894150 22894562 L1PA7 6471 + 5213 5621 38117 364 4 0 44 chain 71111 chr18 80373285 + 22894563 22895404 L1PA7 6471 + 5625 6470 23739 511 0 1 237 0 4 78 1 0 14 chain 11062 chr18 80373285 + 23004099 23004479 L1MA5 2750 + 2408 2726 68466 4 0 1 75 0 2 53 223 158 25 chain 5338 chr18 80373285 + 23013926 23013994 Tigger1 2417 + 1312 1380 84018 68 chain 14787 chr18 80373285 + 23043406 23044006 L1MB3 1562 + 1137 1413 62544 38 27 26 22 13 12 38 318 0 33 10 7 37 2 1 62 chain 10214 chr18 80373285 + 23062858 23063029 Tigger4b 360 + 173 349 69985 14 8 14 69 6 0 9 0 9 9 4 0 52 chain 6348 chr18 80373285 + 23069634 23069783 MER4A1 472 + 336 472 79846 23 60 46 11 0 1 55 chain 44545 chr18 80373285 + 23168867 23169400 MER41A 554 + 0 539 31807 318 0 1 148 1 6 66 chain 26146 chr18 80373285 + 23269137 23269504 THE1C 375 + 0 375 47504 106 24 24 6 0 6 83 0 3 122 1 0 25 chain 22639 chr18 80373285 + 23277142 23277505 THE1A 353 + 7 353 52928 40 7 8 145 10 8 10 4 0 6 15 7 69 6 2 51 chain 278893 chr18 80373285 + 23285069 23288300 HERVH-int 3825 + 438 3825 7456 43 15 123 14 1 38 32 0 2 7 1 0 83 2 0 7 3 8 441 0 5 429 0 1 10 0 5 246 11 0 369 0 1 394 0 4 381 0 2 742 chain 27464 chr18 80373285 + 23289650 23290046 LTR7 482 + 0 482 45620 31 22 28 10 8 46 109 8 40 50 0 10 158 chain 346366 chr18 80373285 + 23326178 23330202 L1PA6 6164 + 2124 6160 5959 208 5 7 526 0 4 756 5 1 238 0 1 784 1 0 700 0 1 481 0 1 22 1 2 26 7 11 27 8 6 7 0 4 70 1 2 151 chain 162561 chr18 80373285 + 23426355 23428178 L1PA5 6144 + 4320 6143 11574 1823 chain 7216 chr18 80373285 + 23456379 23456464 HY4 93 + 9 93 76892 59 1 0 25 chain 65113 chr18 80373285 + 23490705 23491622 L1MA2 4263 + 2925 3795 25164 48 11 1 114 0 1 29 45 0 255 11 17 108 0 8 55 1 0 23 7 2 72 7 6 131 chain 15576 chr18 80373285 + 23522372 23522597 MER30 238 + 0 238 61558 107 7 24 68 10 6 33 chain 4238 chr18 80373285 + 23603794 23603843 LTR47A 437 + 0 49 89897 49 chain 37228 chr18 80373285 + 23699743 23700276 MER41C 542 + 0 507 36600 49 0 1 272 0 1 10 54 13 112 0 13 36 chain 44497 chr18 80373285 + 23766854 23767555 L1PA16 3655 + 1727 2500 31829 68 1 0 48 25 26 39 1 14 84 5 0 7 11 3 60 1 0 31 0 1 5 1 0 89 1 9 58 1 0 77 16 82 72 chain 3831 chr18 80373285 + 23780719 23780762 MER91B 187 + 125 168 92637 43 chain 7821 chr18 80373285 + 23868046 23868153 Tigger4a 237 + 0 107 75317 50 3 4 5 1 0 48 chain 36799 chr18 80373285 + 23964874 23965348 LTR2B 499 + 0 495 36885 14 0 1 54 1 0 21 0 2 18 0 19 177 0 1 10 1 0 178 chain 8395 chr18 80373285 + 24074334 24074452 MER85 139 + 6 134 73913 84 0 10 11 1 2 5 1 0 16 chain 67366 chr18 80373285 + 24074536 24075310 L1PA5 6144 + 5369 6144 24608 529 0 1 245 chain 23061 chr18 80373285 + 24121298 24121588 AluSp 311 + 8 293 52274 86 7 0 182 0 2 15 chain 23080 chr18 80373285 + 24142042 24142328 AluSg7 307 + 0 290 52243 45 5 8 78 0 1 158 chain 3030 chr18 80373285 + 24166122 24166173 L1MA3 4352 + 4258 4307 99491 24 8 6 19 chain 111676 chr18 80373285 + 24240897 24242223 L1PA7 6471 + 5080 6406 16851 6 0 1 416 5 4 114 1 0 77 0 2 648 11 10 48 chain 82070 chr18 80373285 + 24254152 24255345 L1MA2 4263 + 723 1915 21230 33 0 1 281 16 17 20 0 2 59 1 12 45 0 4 189 17 4 15 8 0 41 13 17 79 16 12 133 1 0 9 0 1 5 2 0 187 1 4 22 chain 29792 chr18 80373285 + 24255356 24256131 MER4A1 472 + 1 461 42242 217 4 0 6 9 34 101 4 3 26 3 17 19 349 0 37 chain 44714 chr18 80373285 + 24297880 24298718 MER41A 554 + 0 554 31741 463 302 18 73 chain 7028 chr18 80373285 + 24308633 24308736 MER3 215 + 0 110 77504 58 7 14 38 chain 135083 chr18 80373285 + 24352406 24353896 L1PA4 6152 + 4480 5969 13537 560 1 0 929 chain 4439 chr18 80373285 + 24425337 24425416 Tigger3a 397 + 160 249 88669 17 4 9 17 4 9 37 chain 24836 chr18 80373285 + 24439384 24439662 AluY 311 + 29 308 49533 103 0 1 175 chain 22363 chr18 80373285 + 24507476 24507790 L1MA2 4263 + 3810 4114 53323 143 14 12 93 7 0 47 1 0 9 chain 30042 chr18 80373285 + 24591677 24592112 MLT2A1 477 + 0 475 42011 46 1 0 115 2 0 7 1 2 159 0 16 32 19 51 7 6 0 40 chain 15715 chr18 80373285 + 24615846 24616063 L1PA8 5853 + 5635 5848 61388 44 1 0 10 1 0 51 2 1 19 1 0 88 chain 3877 chr18 80373285 + 24637564 24637665 MER53 195 - 2 171 92306 12 10 0 14 26 104 39 chain 26120 chr18 80373285 + 24696206 24696547 THE1B 368 + 0 361 47539 40 0 15 117 1 0 28 2 0 106 5 13 42 chain 5639 chr18 80373285 + 24724355 24724497 L1MA5A 2387 + 2263 2380 82604 31 43 23 13 1 0 10 1 0 22 2 0 13 1 0 5 chain 20850 chr18 80373285 + 24790485 24790872 MSTB1 431 + 25 421 55308 31 6 8 99 11 10 36 1 3 52 73 79 78 chain 18222 chr18 80373285 + 24836338 24836845 L1PA3long 6157 + 5690 6153 58438 172 43 0 153 1 0 138 chain 10588 chr18 80373285 + 24839738 24839919 L1MA3 4352 + 4119 4268 69247 116 4 0 24 28 0 9 chain 26434 chr18 80373285 + 24899602 24899933 L1PA7 6471 + 6140 6470 47076 64 6 7 154 1 2 95 3 0 8 chain 518248 chr18 80373285 + 24901157 24907226 L1PA5 6144 + 0 6139 2354 135 29 43 295 5 6 482 0 2 206 9 0 106 0 10 122 0 5 901 2 1 170 1 10 836 25 28 624 0 26 1286 1 0 345 1 2 147 1 11 340 chain 49761 chr18 80373285 + 25009166 25010299 L1PB1 5432 + 4651 5427 29653 49 0 4 354 13 13 27 343 16 24 2 1 5 1 0 12 2 0 3 2 0 9 3 1 51 2 1 15 1 0 41 7 6 13 25 12 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 13473 chr18 80373285 + 25150110 25150413 L1PB1 5432 + 5146 5414 64352 12 8 4 6 2 0 11 5 0 41 2 1 16 1 0 44 1 0 15 25 12 19 8 5 14 2 0 21 6 5 19 1 0 13 1 0 10 chain 511203 chr18 80373285 + 25266452 25272922 L1PA7 6471 + 0 6467 2701 178 3 4 15 8 7 117 4 0 88 55 33 17 0 1 119 0 1 4 1 0 659 6 5 85 21 22 11 1 0 381 10 9 213 13 17 133 0 1 512 8 0 235 3 2 632 0 8 19 0 1 12 1 0 192 5 11 10 0 1 662 0 2 111 4 5 72 0 2 21 0 1 143 0 3 69 0 1 468 0 5 294 0 3 93 1 0 21 1 0 291 20 20 281 0 1 137 4 0 6 chain 5808 chr18 80373285 + 25300624 25300704 MADE1 96 + 0 96 81888 48 2 18 30 chain 29366 chr18 80373285 + 25312530 25312844 AluYb8 318 + 0 315 42790 131 0 1 183 chain 419260 chr18 80373285 + 25380497 25385927 L1PA7 6471 + 1350 6451 4889 1283 7 0 87 21 4 95 0 1 6 0 3 655 3 2 17 1 0 755 1 2 314 1 0 4 0 1 77 0 1 9 0 4 116 0 1 164 1 0 4 1 2 476 2 1 180 1 0 183 314 0 155 0 1 354 2 0 5 9 11 15 1 2 111 chain 3990 chr18 80373285 + 25396792 25396847 L1ME1 1623 + 1193 1247 91517 17 1 0 37 chain 8284 chr18 80373285 + 25398630 25399021 MLT1B 390 + 12 373 74204 13 7 10 15 5 15 20 237 195 42 1 0 51 chain 27634 chr18 80373285 + 25432698 25433074 THE1C 375 + 0 375 45414 17 1 2 101 3 0 158 0 1 31 5 6 34 1 0 25 chain 221246 chr18 80373285 + 25485076 25487433 L1HS 6032 + 3673 6030 9000 2357 chain 24551 chr18 80373285 + 25500439 25500729 AluSp 311 + 11 302 49942 45 1 2 244 chain 3340 chr18 80373285 + 25513212 25513439 ERV3-16A3_LTR 481 + 74 324 96688 13 11 10 30 150 174 23 chain 19581 chr18 80373285 + 25546452 25549340 L1MA3 4352 + 612 4325 56921 13 13 9 139 2 0 73 2432 3266 123 4 0 23 2 0 20 9 13 26 1 0 8 chain 12679 chr18 80373285 + 25567624 25567809 MER30 238 + 38 238 65662 60 12 0 10 1 28 102 chain 100493 chr18 80373285 + 25577799 25578945 L1PA5 6144 + 4991 6141 18238 303 2 0 714 0 1 113 0 5 14 chain 50011 chr18 80373285 + 25587044 25587621 L1PA4 6152 + 5565 6141 29557 432 4 1 5 0 2 136 chain 465040 chr18 80373285 + 25716156 25721807 L1PA5 6144 + 3 5336 3990 465 4 1 1115 2 1 123 0 1 54 6 0 63 308 0 1121 1 2 215 1 0 344 1 0 174 2 0 840 0 1 241 0 1 571 chain 164099 chr18 80373285 + 25745151 25747238 L1PA10 4194 + 2074 4143 11475 536 4 2 51 9 12 281 21 0 116 1 0 62 0 3 29 0 4 582 7 6 355 8 5 25 chain 270782 chr18 80373285 + 25774316 25777776 L1PA8 5853 + 2248 5683 7691 220 0 6 124 0 1 289 1 0 31 2 1 46 2 1 30 1 0 283 0 6 218 0 1 518 0 1 293 4 1 117 0 2 19 9 10 50 0 2 165 1 0 183 0 1 139 9 8 378 27 3 53 9 0 116 1 0 44 2 0 71 1 0 4 chain 89991 chr18 80373285 + 25790740 25791739 L1PA4 6152 + 5144 6143 19686 57 0 1 99 1 0 842 chain 2943 chr18 80373285 + 25808542 25808574 L1PA8 5853 + 5646 5678 100470 32 chain 12290 chr18 80373285 + 25808576 25808752 L1PA8 5853 + 5679 5853 66301 61 2 1 19 2 1 92 chain 11756 chr18 80373285 + 25858279 25858505 L1MA5A 2387 + 2108 2299 67296 47 2 0 26 12 11 23 3 0 17 28 0 63 1 0 4 chain 18659 chr18 80373285 + 25879919 25880204 L1PA16 3655 + 3317 3571 57937 66 30 1 32 7 5 150 chain 27111 chr18 80373285 + 25890750 25891217 L1MA3 4352 + 3862 4282 46110 150 0 1 4 1 0 9 9 4 62 67 31 112 4 0 25 2 0 22 chain 42247 chr18 80373285 + 25974861 25975700 MER41A 554 + 23 554 33218 19 0 1 387 316 0 39 1 6 44 0 2 33 chain 44341 chr18 80373285 + 25976043 25976575 MER41A 554 + 18 554 31925 390 0 4 142 chain 29674 chr18 80373285 + 26113994 26114376 MSTA-int 1630 + 1223 1606 42406 146 11 12 225 chain 124958 chr18 80373285 + 26121465 26123795 L1PA11 4918 + 49 2260 14712 28 15 11 23 1 0 19 2 0 50 1 0 26 0 3 6 11 5 225 0 2 68 0 2 106 1 0 200 11 9 60 571 457 46 1 9 83 2 0 52 0 2 153 2 1 4 0 1 113 4 1 135 0 3 198 21 18 92 chain 30419 chr18 80373285 + 26128163 26128552 MLT2A1 477 + 0 383 41662 169 4 1 11 4 0 23 4 5 174 chain 14437 chr18 80373285 + 26150025 26150235 Tigger4a 237 + 29 237 62983 143 1 0 6 1 8 30 13 5 16 chain 87673 chr18 80373285 + 26187417 26189916 L1MA2 4263 + 405 4028 20104 78 5 3 73 0 1 231 7 5 217 0 1 25 5 6 45 4 1 227 1207 2340 4 1 0 144 3 0 58 1 0 5 8 10 79 1 0 5 13 12 53 chain 4811 chr18 80373285 + 26256885 26256967 MADE1 96 + 0 96 86643 23 5 3 16 1 17 37 chain 13847 chr18 80373285 + 26517190 26517370 THE1B 368 + 0 181 63798 15 2 0 25 0 5 127 2 0 9 chain 34864 chr18 80373285 + 26558153 26558641 L1MA2 4263 + 3611 4085 38115 51 1 0 19 1 0 111 17 14 150 11 9 93 7 0 27 chain 4820 chr18 80373285 + 26580827 26580896 MER58B 340 + 138 207 86601 5 2 0 5 0 2 57 chain 15423 chr18 80373285 + 26602872 26603147 L1PA14 3548 + 3015 3284 61753 99 4 0 17 0 6 6 32 24 18 0 1 35 21 20 43 chain 37524 chr18 80373285 + 26735379 26735794 L1PA4 6152 + 5735 6151 36388 266 0 1 149 chain 272279 chr18 80373285 + 26797636 26801865 L1MA2 4263 + 4 4105 7651 20 1 0 45 0 4 89 14 0 87 5 4 31 5 6 39 0 7 53 18 29 74 1 0 163 4 5 79 10 9 4 0 1 180 3 4 237 0 1 65 15 17 49 10 5 90 3 7 267 14 16 5 2 0 85 0 1 54 0 1 5 0 3 28 31 0 73 0 4 20 37 0 275 0 1 79 1 0 4 0 1 29 1 2 14 1 0 241 6 29 56 5 0 34 12 14 26 51 2 32 1 2 76 0 5 16 5 6 145 4 0 97 0 1 44 0 2 28 6 9 83 41 12 68 0 1 54 9 13 50 3 4 11 8 23 7 2 0 12 33 0 6 4 1 5 1 0 64 11 10 132 13 10 149 12 10 65 48 41 34 chain 14818 chr18 80373285 + 26836241 26836453 Ricksha_0 1343 + 1091 1299 62505 93 4 2 43 0 2 45 1 0 10 1 0 8 2 0 5 chain 26893 chr18 80373285 + 26844751 26845125 THE1C 375 + 0 375 46418 115 8 5 64 9 10 89 0 2 28 0 1 61 chain 90297 chr18 80373285 + 26847869 26848887 L1PA5 6144 + 5128 6144 19625 166 1 0 597 1 0 253 chain 87819 chr18 80373285 + 26947349 26948401 L1PA7 6471 + 5404 6469 20080 210 0 3 8 1 0 43 1 5 36 0 1 96 0 1 592 0 1 54 0 4 11 chain 52718 chr18 80373285 + 26958427 26959319 L1PA16 3655 + 2688 3590 28662 24 17 7 49 0 10 66 10 12 66 14 13 24 7 16 104 34 37 88 9 8 35 18 19 24 2 0 32 0 1 93 7 9 57 3 1 8 1 2 86 3 0 11 chain 10607 chr18 80373285 + 26960574 26960699 MER85 139 + 4 139 69218 85 0 10 40 chain 26865 chr18 80373285 + 27052704 27053086 L1PA8 5853 + 5476 5852 46451 84 1 0 49 17 15 54 5 4 58 2 1 19 2 1 91 chain 5638 chr18 80373285 + 27061074 27061142 MER84 505 + 0 69 82606 29 0 1 39 chain 54484 chr18 80373285 + 27098030 27098744 L1PA8 5853 + 4915 5633 28053 95 0 2 62 0 12 7 24 11 141 0 6 313 1 0 44 2 0 25 chain 15854 chr18 80373285 + 27143738 27143958 L1PA8 5853 + 5637 5853 61222 42 1 0 6 4 3 48 8 7 17 1 0 93 chain 28843 chr18 80373285 + 27217224 27217533 AluYa5 310 + 0 307 43563 132 2 0 175 chain 112305 chr18 80373285 + 27219937 27221392 HERVL-int 5654 + 0 1457 16777 32 6 5 251 20 20 115 0 2 372 0 1 659 chain 28450 chr18 80373285 + 27225799 27226160 MER48 407 + 17 398 44191 13 0 1 4 1 0 98 1 21 244 chain 31182 chr18 80373285 + 27230591 27231044 LTR7B 505 + 0 496 40990 105 0 10 60 0 38 12 3 27 28 29 0 42 0 1 42 1 0 23 0 1 52 14 13 42 chain 34976 chr18 80373285 + 27232259 27232705 LTR7 482 + 0 482 38030 110 0 5 139 2 0 9 1 32 124 12 14 49 chain 38599 chr18 80373285 + 27266552 27267207 L1PB1 5432 + 4790 5420 35641 105 0 12 122 8 1 14 7 0 18 0 1 40 0 14 18 14 0 12 1 0 9 17 11 41 0 2 10 0 2 14 1 0 44 1 0 9 33 22 16 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 545004 chr18 80373285 + 27279551 27285570 L1PA3long 6157 + 1 6152 1029 151 0 1 211 0 1 412 1 129 101 0 1 846 0 1 4297 chain 20006 chr18 80373285 + 27315635 27315956 THE1B 368 + 0 321 56377 61 50 49 62 4 3 25 2 0 87 0 4 30 chain 39583 chr18 80373285 + 27349276 27349854 MER41E 591 + 0 583 34970 102 19 19 165 2 1 26 0 3 73 38 39 24 0 1 25 0 1 104 chain 29472 chr18 80373285 + 27439956 27440300 AluYb8 318 + 0 318 42636 132 3 0 129 23 0 57 chain 26360 chr18 80373285 + 27476581 27476860 SVA_D 2077 + 1781 2060 47180 279 chain 550111 chr18 80373285 + 27510011 27516039 L1PA2 6032 + 3 6029 739 253 1 0 2313 1 0 437 0 2 73 2 0 2948 chain 143676 chr18 80373285 + 27531335 27532917 L1PA3long 6157 + 4569 6152 12792 54 1 3 9 1 0 1517 chain 58654 chr18 80373285 + 27612612 27613447 L1PA7 6471 + 5650 6423 26771 45 1 2 84 13 15 308 55 8 245 26 8 58 chain 40681 chr18 80373285 + 27694941 27695583 LTR9B 643 + 5 643 34161 58 0 3 135 3 0 2 0 5 17 0 1 98 13 14 52 5 0 31 32 31 50 5 12 11 11 1 62 17 15 40 chain 46259 chr18 80373285 + 27720746 27721251 L1PA4 6152 + 5646 6151 30940 505 chain 12257 chr18 80373285 + 27802682 27802942 L1MA4 2864 + 2393 2653 66359 40 40 39 29 1 0 20 22 24 64 1 2 32 2 1 9 chain 19282 chr18 80373285 + 27803199 27803547 THE1D 372 + 0 372 57258 27 17 17 13 8 18 65 5 6 35 9 14 43 0 6 11 1 0 35 0 4 40 13 12 26 chain 16432 chr18 80373285 + 27866470 27866750 L1PA17 2846 + 2409 2693 60470 109 2 0 16 8 7 28 13 23 8 1 0 32 1 0 15 11 10 36 chain 6482 chr18 80373285 + 27868573 27868719 L1PB1 5432 + 5236 5366 79400 43 2 1 16 1 0 6 18 9 14 10 7 14 2 0 20 chain 11962 chr18 80373285 + 27955235 27955379 L1PA7 6471 + 6328 6470 66901 132 2 0 10 chain 19614 chr18 80373285 + 28008514 28008750 L1PA6 6164 + 5924 6162 56894 176 0 2 60 chain 64066 chr18 80373285 + 28017702 28018562 L1PB1 5432 + 3251 4139 25400 298 0 2 17 8 11 16 4 8 132 19 43 104 7 0 216 0 2 39 chain 25595 chr18 80373285 + 28143785 28144163 L1PA8 5853 + 5483 5853 48326 38 1 0 43 1 0 44 9 7 64 5 4 7 1 0 49 6 5 16 2 1 92 chain 537713 chr18 80373285 + 28240448 28246440 L1PA3long 6157 + 4 6142 1470 148 0 1 173 0 3 442 5 133 2370 0 5 79 0 2 219 0 1 107 1 0 1165 0 7 1283 chain 46333 chr18 80373285 + 28254280 28254874 L1PA8A 6298 + 5148 5744 30907 338 2 1 42 0 2 25 9 10 178 chain 6162 chr18 80373285 + 28260110 28260276 L1MA4A 3247 + 3007 3168 80476 74 74 69 18 chain 16933 chr18 80373285 + 28260366 28260574 L1PA7 6471 + 6257 6465 59874 40 0 1 9 2 1 157 chain 24654 chr18 80373285 + 28286459 28286745 L1PA7 6471 + 6178 6464 49787 286 chain 57558 chr18 80373285 + 28296239 28296897 L1PA4 6152 + 3134 3794 27089 177 1 0 197 0 1 103 0 2 180 chain 17820 chr18 80373285 + 28306311 28306580 AluY 311 + 57 311 58859 74 26 9 128 10 12 31 chain 50913 chr18 80373285 + 28307047 28307710 THE1B-int 1605 + 941 1604 29233 44 6 7 15 9 8 127 4 8 184 4 0 270 chain 20789 chr18 80373285 + 28307711 28308032 THE1B 368 + 0 344 55380 44 9 24 100 2 0 30 35 45 101 chain 4645 chr18 80373285 + 28336112 28336212 LTR33 499 + 401 499 87556 39 29 27 32 chain 17141 chr18 80373285 + 28382520 28382875 THE1C 375 + 0 375 59651 15 2 0 29 0 9 17 20 21 18 14 16 5 2 0 49 0 2 5 55 63 43 0 2 81 chain 41752 chr18 80373285 + 28395309 28395814 L1PA7 6471 + 5970 6466 33515 221 9 1 95 1 0 179 chain 26878 chr18 80373285 + 28424583 28424945 THE1A 353 + 0 353 46433 110 1 0 92 1 0 86 0 1 10 13 5 49 chain 111424 chr18 80373285 + 28473304 28474892 THE1A-int 1579 + 0 1579 16887 109 0 1 195 0 1 141 0 1 182 37 0 9 7 48 240 1 0 6 25 12 258 40 39 17 0 1 18 11 10 40 13 12 239 chain 3962 chr18 80373285 + 28487577 28487693 L1MD1 2063 + 184 298 91680 18 2 1 22 45 44 29 chain 209178 chr18 80373285 + 28489260 28491643 L1PA5 6144 + 3752 6131 9378 590 3 7 151 0 1 642 3 0 3 6 0 46 0 1 588 2 1 349 chain 79270 chr18 80373285 + 28577793 28578674 L1PA3long 6157 + 4943 5824 21790 881 chain 30262 chr18 80373285 + 28578674 28579004 L1PA3long 6157 + 5825 6155 41798 330 chain 3262 chr18 80373285 + 28629183 28629219 MLT1E3 631 + 60 96 97369 36 chain 57532 chr18 80373285 + 28630087 28630748 L1PA6 6164 + 5499 6160 27095 661 chain 94905 chr18 80373285 + 28653805 28655060 L1PA7 6471 + 5212 6470 18922 120 29 26 227 0 1 34 2 1 188 21 24 303 0 2 165 18 19 148 chain 179895 chr18 80373285 + 28660365 28662570 L1PA7 6471 + 4243 6465 10589 36 0 3 350 1 2 321 4 2 34 2 1 20 3 4 145 0 4 63 1 0 50 3 15 308 0 1 22 1 4 138 1 0 547 3 0 5 16 19 122 3 0 6 chain 19492 chr18 80373285 + 28687702 28688014 L1PA8 5853 + 5549 5853 57043 15 11 10 34 2 0 47 1 0 24 1 0 8 8 9 5 2 0 39 2 1 19 1 0 93 chain 15845 chr18 80373285 + 28710327 28710534 MER2 342 + 82 287 61230 34 2 0 171 chain 9338 chr18 80373285 + 28731377 28731495 LTR8 732 + 592 714 71838 106 0 4 12 chain 27555 chr18 80373285 + 28735160 28735464 AluYg6 310 + 0 299 45505 131 3 0 40 2 0 128 chain 71634 chr18 80373285 + 28749300 28750133 L1P1 4361 + 3510 4341 23628 351 0 1 289 1 0 154 1 0 23 2 1 12 chain 29100 chr18 80373285 + 28783794 28784104 AluYa5 310 + 0 309 43189 132 1 0 177 chain 43992 chr18 80373285 + 28879163 28879683 L1P1 4361 + 3130 3649 32134 35 1 0 11 0 1 333 1 0 139 chain 96552 chr18 80373285 + 28942181 28943222 L1PA2 6032 + 4988 6029 18709 1041 chain 82915 chr18 80373285 + 28981162 28982162 L1PA7 6471 + 5465 6466 21041 149 0 1 591 6 7 4 1 0 249 chain 120712 chr18 80373285 + 28986251 28987612 L1PA5 6144 + 4772 6132 15402 21 0 1 96 4 1 556 0 1 684 chain 9128 chr18 80373285 + 29083018 29083204 L1PB1 5432 + 5245 5411 72288 36 1 0 15 19 0 6 0 7 19 6 4 14 2 0 24 1 0 19 6 5 10 1 0 7 chain 5409 chr18 80373285 + 29130012 29130087 MLT1B 390 + 304 380 83665 22 5 6 48 chain 3829 chr18 80373285 + 29147246 29147305 FAM 185 + 35 132 92653 13 1 39 45 chain 5425 chr18 80373285 + 29196445 29196525 MADE1 96 - 0 96 83580 38 5 21 37 chain 65892 chr18 80373285 + 29197498 29198526 L1PB1 5432 + 4484 5420 24981 142 4 0 477 40 3 11 18 1 20 1 0 9 1 0 10 16 10 53 3 1 15 1 0 41 8 7 12 3 0 6 15 6 11 3 1 7 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 201887 chr18 80373285 + 29219055 29221366 L1PA5 6144 + 3748 6132 9643 596 0 4 521 0 1 221 5 74 6 7 0 126 3 7 665 1 3 160 chain 65117 chr18 80373285 + 29474006 29474862 L1PA8A 6298 + 5442 6291 25161 47 2 1 73 8 1 611 15 16 100 chain 105678 chr18 80373285 + 29553285 29554437 L1PA3long 6157 + 4033 5185 17600 1152 chain 99103 chr18 80373285 + 29567479 29568652 L1PA7 6471 + 5302 6470 18402 241 1 0 77 5 1 849 chain 70317 chr18 80373285 + 29589214 29590368 L1PA10 4194 + 176 1287 23912 10 4 0 13 3 0 8 2 0 9 13 9 7 2 0 8 6 5 5 1 0 22 2 0 15 1 0 6 46 20 22 2 0 21 22 18 6 1 0 15 7 0 11 1 0 79 7 5 84 7 20 16 4 5 68 1 2 326 1 7 11 1 0 258 chain 4247 chr18 80373285 + 29649140 29649196 MLT1E2 623 + 57 112 89839 8 1 0 47 chain 115523 chr18 80373285 + 29701421 29702847 L1PA7 6471 + 5070 6470 16305 543 11 8 504 23 0 188 8 9 144 1 0 4 chain 117096 chr18 80373285 + 29723334 29724723 LTR12C 1709 + 0 1709 16038 309 0 1 4 1 0 478 9 325 107 0 4 481 chain 118279 chr18 80373285 + 29900121 29901485 L1PA5 6144 + 4777 6141 15836 320 0 1 778 4 3 102 1 6 5 5 0 149 chain 179845 chr18 80373285 + 29948476 29950506 L1PA5 6144 + 4089 6128 10593 191 0 2 1017 0 4 523 0 1 162 0 2 6 1 0 103 0 1 27 chain 18320 chr18 80373285 + 29975165 29975492 THE1D 372 + 0 327 58339 51 9 0 115 54 62 47 9 10 42 chain 39820 chr18 80373285 + 30044442 30045057 LTR14B 630 + 10 630 34801 151 1 0 114 19 54 62 68 39 200 chain 34112 chr18 80373285 + 30131799 30132302 LTR19A 502 + 0 502 38627 55 16 4 24 1 0 130 25 24 56 0 12 6 1 2 189 chain 14805 chr18 80373285 + 30132406 30132586 L1PA5 6144 + 5955 6143 62523 28 0 1 4 5 12 143 chain 31426 chr18 80373285 + 30145165 30145634 MER48 407 + 0 407 40793 132 41 1 24 21 1 47 3 1 201 chain 14452 chr18 80373285 + 30197870 30198066 L1P3 4156 + 3945 4139 62964 60 0 1 101 2 0 7 2 1 24 chain 7826 chr18 80373285 + 30226815 30226904 THE1B-int 1605 + 1508 1597 75305 89 chain 3898 chr18 80373285 + 30227280 30227346 L1MA5 2750 + 232 297 92139 40 10 9 16 chain 42231 chr18 80373285 + 30244089 30244558 L1PA2 6032 + 5563 6028 33227 458 4 0 7 chain 72570 chr18 80373285 + 30254831 30255832 L1PA8 5853 + 4856 5853 23413 154 2 0 64 13 14 269 0 1 163 1 0 43 1 0 36 10 8 64 23 21 46 6 5 18 1 0 30 0 4 57 chain 82866 chr18 80373285 + 30286264 30287298 L1PA7 6471 + 5434 6464 21052 189 3 0 494 1 0 120 15 15 212 chain 55219 chr18 80373285 + 30297877 30298546 L1PA7 6471 + 3331 4000 27800 198 3 2 304 0 1 164 chain 25146 chr18 80373285 + 30409077 30409397 LTR76 689 + 369 689 49038 5 0 1 271 6 5 38 chain 44154 chr18 80373285 + 30419378 30420028 LTR12_ 688 + 0 688 32047 54 0 41 153 53 52 9 3 0 264 25 26 89 chain 49477 chr18 80373285 + 30515983 30516550 L1PA5 6144 + 5575 6142 29775 37 1 0 177 0 2 21 0 1 322 2 0 7 chain 54228 chr18 80373285 + 30663809 30664657 L1PA11 4918 + 3753 4578 28143 232 3 4 6 1 0 264 13 14 55 1 0 60 8 7 12 2 0 34 1 0 34 8 6 7 1 0 14 50 37 15 1 0 13 2 0 11 chain 448446 chr18 80373285 + 30730745 30737057 L1PA8A 6298 + 34 6290 4416 6 1 0 16 1 0 5 27 16 21 13 10 11 18 11 12 7 6 9 2 1 10 12 10 9 2 0 17 22 18 7 1 0 6 1 0 7 1 0 17 5 0 7 2 0 42 1 0 22 2 0 5 2 0 5 1 0 49 51 46 69 7 6 90 0 1 204 4 0 145 0 3 182 0 1 4 3 4 58 0 2 10 6 10 58 13 14 4 1 0 200 3 0 415 9 0 6 36 48 48 7 8 7 0 1 323 1 0 32 0 2 62 0 1 48 1 2 44 1 2 550 6 4 101 20 0 168 21 20 118 0 1 27 9 14 153 1 2 79 0 1 84 0 1 218 0 1 116 0 4 65 6 1 80 0 1 40 17 14 4 0 1 259 1 3 139 3 9 287 0 1 251 0 1 122 2 1 7 0 1 172 15 18 249 4 5 58 1 0 28 1 0 4 0 1 36 19 4 72 6 7 31 2 0 5 1 4 98 chain 30431 chr18 80373285 + 30768373 30768829 MER4D1 891 + 0 456 41647 12 0 1 15 39 40 88 1 2 13 1 0 245 1 0 13 1 0 27 chain 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31218753 31218818 MER41B 635 + 481 547 86672 28 1 2 36 chain 182089 chr18 80373285 + 31218930 31221832 L1PBa 3878 + 1161 3738 10490 282 0 1 8 2 0 73 3 0 52 72 71 60 0 1 34 8 7 74 0 2 5 14 12 71 1 0 664 308 0 22 13 7 56 8 2 41 0 2 30 7 8 11 5 4 39 0 2 253 1 2 50 0 3 110 6 0 7 0 1 144 6 5 338 2 1 22 chain 44381 chr18 80373285 + 31298224 31298850 L1PA8 5853 + 5229 5847 31896 304 6 5 26 1 0 44 2 0 70 13 11 39 35 33 86 chain 5372 chr18 80373285 + 31372235 31372298 MLT1D 503 + 405 468 83835 63 chain 8851 chr18 80373285 + 31382316 31382428 HY1 111 + 0 111 72859 85 1 0 26 chain 12094 chr18 80373285 + 31440726 31440888 MER30 238 + 47 237 66676 57 1 29 104 chain 41635 chr18 80373285 + 31492659 31493327 LTR66 600 + 0 600 33604 199 0 1 201 80 4 56 1 17 10 16 0 52 21 28 32 chain 35732 chr18 80373285 + 31493580 31494558 HERVL66-int 1251 + 155 910 37577 7 7 0 19 97 73 35 30 12 16 89 57 59 0 1 62 1 0 52 23 12 17 20 17 46 6 5 33 1 0 77 2 0 57 7 0 17 20 0 47 111 14 20 chain 39732 chr18 80373285 + 31496467 31497030 LTR66 600 + 0 600 34868 136 0 4 166 2 0 5 16 19 72 7 5 11 0 1 38 0 33 110 chain 36333 chr18 80373285 + 31539721 31540254 MER1A 529 + 1 529 37187 161 66 65 231 17 13 58 chain 9604 chr18 80373285 + 31558144 31558338 L1PB4 2604 + 2322 2495 71259 28 64 40 5 0 3 97 chain 23608 chr18 80373285 + 31690812 31691152 L1PA8 5853 + 5509 5853 51416 55 1 0 45 2 0 13 0 1 22 0 8 28 1 0 7 3 1 50 3 2 19 1 0 34 10 0 8 0 13 38 chain 8189 chr18 80373285 + 31718192 31718321 MER20 218 + 24 157 74437 56 24 28 49 chain 19840 chr18 80373285 + 31718892 31719134 7SK 245 + 0 242 56619 242 chain 14806 chr18 80373285 + 31721170 31721341 L1PA6 6164 + 5989 6160 62520 171 chain 41009 chr18 80373285 + 31738849 31739384 LTR10A 586 + 0 565 33965 67 7 8 147 14 4 12 0 39 288 chain 2956 chr18 80373285 + 31766151 31766182 MIR 256 + 74 105 100308 31 chain 47710 chr18 80373285 + 31775559 31776141 LTR10C 591 + 4 591 30393 427 0 2 75 0 2 42 1 2 37 chain 4410 chr18 80373285 + 31778846 31778958 MLT1E1A 663 + 565 663 88848 34 25 24 15 13 0 25 chain 3487 chr18 80373285 + 31799036 31799252 MLT2A1 477 + 0 221 43258 142 12 13 14 1 5 47 chain 71280 chr18 80373285 + 31799265 31800437 HERVL-int 5654 + 2959 3812 23705 29 10 9 336 319 0 422 3 4 53 chain 5321 chr18 80373285 + 31800437 31800499 MLT2A1 477 + 80 142 84095 62 chain 4177 chr18 80373285 + 31800499 31800560 MLT2A1 477 + 143 208 90283 24 3 7 34 chain 4214 chr18 80373285 + 31800574 31800835 MLT2A1 477 + 221 477 43258 18 3 7 74 2 0 65 4 0 6 28 26 39 2 1 20 chain 30506 chr18 80373285 + 31803782 31804182 LTR7 482 + 0 482 41560 67 10 48 109 0 1 39 0 31 19 0 10 41 0 2 115 chain 284301 chr18 80373285 + 31804184 31807840 HERVH-int 3825 + 0 3825 7308 212 0 11 307 1 0 11 1 0 4 0 1 24 1 0 10 1 0 12 22 12 15 1 0 12 3 0 14 14 11 27 2 0 8 7 6 23 20 0 9 2 1 49 0 1 4 2 0 237 2 1 209 15 0 200 9 0 20 1 3 16 1 0 211 0 5 93 0 1 200 0 1 42 0 3 66 4 9 754 0 1 159 1 0 55 9 11 37 10 220 487 chain 28267 chr18 80373285 + 31809655 31810040 LTR7 482 + 0 466 44461 67 10 48 109 0 1 24 1 0 17 0 31 17 0 10 62 0 2 78 chain 76416 chr18 80373285 + 31810500 31811482 LTR5_Hs 974 + 0 974 22457 458 0 4 164 10 9 24 0 1 14 5 7 95 7 7 47 15 1 143 chain 61154 chr18 80373285 + 31812902 31813610 L1PA5 6144 + 5432 6138 26072 218 0 1 154 1 0 273 2 0 60 chain 33598 chr18 80373285 + 31815984 31816397 L1PA7 6471 + 6059 6469 38999 244 19 13 122 0 1 17 0 2 11 chain 12453 chr18 80373285 + 31826168 31826317 L1PA6 6164 + 6014 6162 66062 133 1 0 15 chain 47178 chr18 80373285 + 31887128 31888075 L1PA10 4194 + 3216 3811 30579 224 312 0 79 42 2 290 chain 4910 chr18 80373285 + 31937533 31937589 U6 107 + 1 57 86106 56 chain 3911 chr18 80373285 + 31940488 31940536 MER33 330 + 226 276 92041 42 0 2 6 chain 34655 chr18 80373285 + 31948335 31948785 LTR2 463 + 0 463 38249 55 0 3 36 0 12 6 20 18 333 chain 4473 chr18 80373285 + 31951306 31951362 LTR29 598 + 502 558 88478 56 chain 55424 chr18 80373285 + 31951453 31952413 MER4E1 777 + 0 769 27742 25 2 0 18 0 4 8 0 1 207 222 0 67 2 21 85 0 1 105 1 8 98 5 6 115 chain 31862 chr18 80373285 + 31954746 31955199 LTR7B 505 + 0 496 40447 105 0 10 60 15 22 28 3 27 26 0 2 42 0 1 42 1 0 21 0 1 54 2 1 54 chain 178316 chr18 80373285 + 31959492 31961654 SVA_D 2077 + 0 2077 10664 23 3 0 747 40 0 146 2 1 30 11 0 39 0 1 43 42 16 6 1 0 139 49 0 161 0 49 22 2 1 342 1 0 304 2 0 7 chain 3666 chr18 80373285 + 31960576 31960618 SVA_D 2077 + 1130 1172 32647 42 chain 4276 chr18 80373285 + 31960764 31960813 SVA_D 2077 + 1318 1367 32647 49 chain 24322 chr18 80373285 + 31995197 31995479 AluSp 311 + 10 292 50302 282 chain 31661 chr18 80373285 + 32000482 32000936 LTR7B 505 + 0 495 40612 108 0 10 57 0 38 12 35 28 27 0 2 83 1 0 74 16 15 41 chain 49623 chr18 80373285 + 32003849 32004489 HERVH-int 3825 + 3186 3825 29711 57 18 17 565 chain 21154 chr18 80373285 + 32005934 32006224 LTR7B 505 + 0 365 54940 108 0 10 57 0 38 12 3 27 26 0 2 40 1 2 43 chain 3250 chr18 80373285 + 32066719 32066760 MIRb 242 + 164 205 97477 41 chain 100241 chr18 80373285 + 32139682 32140952 LTR12C 1709 + 0 1709 18273 338 0 43 224 1 0 5 0 2 155 0 237 12 0 2 53 0 47 106 0 4 180 0 4 51 38 9 4 1 0 39 0 131 63 chain 3290 chr18 80373285 + 32146535 32146694 MER5A 189 + 28 189 97105 37 107 109 15 chain 20442 chr18 80373285 + 32154965 32155350 MER6 865 + 459 865 55837 11 8 11 27 13 14 34 1 4 10 11 8 30 6 10 126 5 4 46 2 12 33 9 13 13 chain 95515 chr18 80373285 + 32168962 32170039 L1PA5 6144 + 5065 6135 18840 454 6 0 512 1 0 104 chain 34565 chr18 80373285 + 32279288 32279782 MER1A 529 + 63 526 38308 13 14 10 144 23 0 221 1 0 10 7 4 61 chain 38766 chr18 80373285 + 32281775 32282214 LTR7 482 + 0 482 35519 264 0 31 10 0 1 7 0 11 158 chain 496114 chr18 80373285 + 32395715 32401334 L1PA5 6144 + 532 6142 3265 6 1 0 602 0 7 734 0 4 626 1 0 56 1 4 28 13 0 577 1 0 8 1 0 519 0 1 67 4 0 271 1 0 1762 2 1 184 1 0 153 chain 145570 chr18 80373285 + 32415430 32417562 L1MA2 4263 + 1976 4092 12649 32 1 0 172 3 4 45 1 0 48 0 1 199 6 8 14 2 0 142 20 20 36 5 0 58 0 1 20 1 2 129 1 3 62 0 1 7 0 1 33 6 0 330 9 13 71 12 11 31 0 2 95 1 0 17 5 1 77 1 0 84 0 2 19 11 11 31 7 4 124 30 28 79 21 14 34 chain 4233 chr18 80373285 + 32526166 32526221 MADE1 96 - 0 96 89923 24 0 41 31 chain 28967 chr18 80373285 + 32569289 32569707 LTR7B 505 + 0 495 43381 90 0 3 14 0 11 57 15 77 26 0 2 40 1 2 43 2 1 30 0 1 44 2 1 21 1 0 32 chain 14647 chr18 80373285 + 32599713 32600052 L1PB1 5432 + 5114 5426 62734 24 1 0 6 1 0 12 2 0 3 2 0 9 3 1 53 11 14 41 4 3 16 3 0 10 16 7 13 3 1 5 1 0 9 7 5 24 1 0 23 1 0 11 1 0 18 1 0 4 chain 17438 chr18 80373285 + 32629419 32629651 LTR18B 584 + 0 229 59309 200 5 0 7 2 4 18 chain 26639 chr18 80373285 + 32637813 32638169 THE1B 368 + 0 368 46772 44 1 16 106 8 6 121 1 0 75 chain 282535 chr18 80373285 + 32657903 32661353 L1PA7 6471 + 3015 6469 7356 560 1 4 435 7 1 562 0 1 371 1 0 15 1 2 18 0 1 88 1 0 278 7 10 29 0 2 32 1 2 195 1 0 419 1 3 39 1 0 193 11 13 173 2 0 8 chain 61908 chr18 80373285 + 32794392 32795102 LTR12C 1709 + 0 1709 25884 296 0 1 276 1 2 78 0 997 59 chain 23994 chr18 80373285 + 32795864 32796189 L1P3 4156 + 3811 4136 50802 21 0 1 155 0 1 9 1 2 107 2 0 7 2 1 21 chain 9538 chr18 80373285 + 32817330 32817469 MER2 342 + 71 215 71394 7 0 4 16 4 5 5 0 1 8 1 0 98 chain 27980 chr18 80373285 + 32980301 32980593 AluYd8 298 + 0 292 44902 292 chain 17862 chr18 80373285 + 33117528 33117732 L1PA5 6144 + 5942 6144 58812 59 2 0 143 chain 146254 chr18 80373285 + 33118494 33120138 L1PA5 6144 + 4431 6087 12596 16 0 3 245 0 2 121 0 3 470 0 4 792 chain 116720 chr18 80373285 + 33139274 33140813 THE1B-int 1605 + 0 1587 16098 48 0 1 381 1 26 40 9 13 117 7 19 771 3 7 62 28 30 72 chain 11822 chr18 80373285 + 33150636 33150845 L1PB2 3958 + 3557 3771 67163 60 1 0 32 31 39 6 2 0 34 0 3 23 5 2 15 chain 26021 chr18 80373285 + 33162043 33162332 L1PA4 6152 + 5852 6141 47688 289 chain 67188 chr18 80373285 + 33219163 33219923 L1PA5 6144 + 5371 6135 24650 439 0 1 271 0 3 50 chain 209080 chr18 80373285 + 33278779 33281110 L1PA3long 6157 + 3818 6155 9380 127 1 2 513 0 3 291 0 1 1251 3 4 145 chain 7011 chr18 80373285 + 33292924 33293038 MLT1E3 631 + 519 631 77564 12 1 0 13 12 11 76 chain 29051 chr18 80373285 + 33313918 33314229 AluYa5 310 + 0 310 43249 132 1 0 178 chain 103034 chr18 80373285 + 33316045 33317509 LTR12C 1709 + 0 1709 17947 242 46 54 40 0 43 81 23 11 62 24 56 65 0 119 64 1 0 119 0 41 74 0 47 97 47 16 394 1 0 84 chain 10298 chr18 80373285 + 33317510 33317638 MER41C 542 + 415 542 69814 16 1 0 111 chain 128005 chr18 80373285 + 33319920 33321376 L1PA5 6144 + 3810 5269 14276 69 2 1 558 0 1 52 0 4 133 1 0 475 1 2 54 1 0 110 chain 123555 chr18 80373285 + 33339923 33341480 THE1A-int 1579 + 0 1571 14921 15 0 2 8 2 3 342 2 3 67 0 2 151 0 1 286 0 3 113 0 1 95 9 10 204 0 1 204 0 1 59 chain 273366 chr18 80373285 + 33383414 33387417 L1PA10 4194 + 175 4143 7625 13 2 0 5 1 0 4 2 0 9 2 0 10 11 7 9 2 0 9 1 0 6 6 5 17 5 3 14 73 63 4 1 0 10 14 9 7 1 0 6 3 0 9 4 0 9 1 0 16 0 1 51 2 30 8 30 0 588 0 2 9 4 3 275 0 1 5 9 8 137 1 0 215 2 1 351 6 7 7 0 3 354 0 6 167 1 2 11 1 0 14 24 29 8 0 2 11 13 15 132 10 4 88 1 0 145 0 10 11 36 8 43 0 1 88 0 5 120 6 8 201 0 1 241 16 25 228 21 18 26 chain 118222 chr18 80373285 + 33414364 33415694 L1PA5 6144 + 4797 6131 15845 1202 0 4 128 chain 28641 chr18 80373285 + 33460224 33460600 THE1C 375 + 0 375 43883 183 1 2 5 1 0 160 1 0 25 chain 27864 chr18 80373285 + 33563962 33564266 AluYa5 310 + 0 310 45091 76 0 6 228 chain 77944 chr18 80373285 + 33767422 33768285 L1PA3long 6157 + 4886 5748 22113 637 2 1 224 chain 104795 chr18 80373285 + 33774030 33775209 L1PA4 6152 + 4960 6142 17713 73 0 1 266 0 1 376 0 1 464 chain 32778 chr18 80373285 + 33785435 33786863 L1PA4 6152 + 3748 5178 9828 192 0 1 832 0 1 404 chain 554431 chr18 80373285 + 33786880 33793028 L1PA3long 6157 + 0 6157 450 1867 0 1 2023 0 1 1034 1 0 110 0 9 648 1 0 464 chain 21967 chr18 80373285 + 33793039 33793996 L1PA4 6152 + 5178 6149 9828 126 0 4 49 0 3 215 1 0 512 4 13 37 2 1 11 chain 14744 chr18 80373285 + 33811403 33811565 L1PA4 6152 + 5817 5979 62605 162 chain 15498 chr18 80373285 + 33811568 33811740 L1PA4 6152 + 5979 6151 61658 172 chain 167679 chr18 80373285 + 33861556 33863430 L1PA3long 6157 + 4282 6157 11233 1848 0 1 26 chain 155867 chr18 80373285 + 33881497 33883214 L1PA3long 6157 + 4438 6157 12012 1712 0 2 5 chain 14128 chr18 80373285 + 33885278 33885511 L1MA1 4479 + 3965 4188 63408 64 1 2 47 1 0 29 2 0 32 4 3 30 7 0 16 chain 136249 chr18 80373285 + 33888893 33890546 L1PA6 6164 + 3024 4678 13415 90 0 1 418 17 0 17 6 6 470 2 3 281 0 1 44 5 17 279 0 3 24 chain 69490 chr18 80373285 + 33939888 33940692 L1PA7 6471 + 5646 6458 24123 411 0 2 165 0 1 59 0 1 129 0 4 40 chain 8643 chr18 80373285 + 33983056 33983334 L1MC1 2226 + 1930 2189 73364 41 0 1 8 3 0 13 2 0 16 1 0 38 95 84 7 1 0 11 15 14 21 1 0 5 chain 5600 chr18 80373285 + 33997813 33998256 L1MB8 1703 + 1314 1679 82805 63 345 270 14 4 1 17 chain 9748 chr18 80373285 + 34038282 34038433 L1MA4A 3247 + 2975 3130 70936 106 6 6 12 4 8 23 chain 120639 chr18 80373285 + 34139883 34142825 L1PA5 6144 + 3164 6128 15422 1028 0 18 676 0 1 324 0 1 74 0 2 840 chain 279260 chr18 80373285 + 34162155 34165250 L1PA3long 6157 + 3061 6157 7443 502 3 0 153 0 1 734 0 1 855 1 0 138 0 2 631 0 1 78 chain 29946 chr18 80373285 + 34166755 34167074 AluYb9 318 + 0 318 42104 123 1 0 195 chain 10755 chr18 80373285 + 34167098 34167235 MER2 342 + 141 278 68944 137 chain 8818 chr18 80373285 + 34213167 34213272 MSTD 398 + 6 111 72953 105 chain 17161 chr18 80373285 + 34234310 34234608 LTR12C 1709 + 928 1193 59621 180 39 10 15 30 26 34 chain 1120 chr18 80373285 + 34234544 34234574 LTR12C 1709 + 885 915 63019 30 chain 3285 chr18 80373285 + 34234608 34234696 LTR12C 1709 + 986 1037 63019 18 43 6 27 chain 16549 chr18 80373285 + 34253299 34253539 MER1A 529 + 245 515 60310 117 0 27 68 20 23 35 chain 126001 chr18 80373285 + 34265572 34267152 THE1A-int 1579 + 0 1571 14558 473 22 23 504 10 5 274 9 5 260 1 0 27 chain 4137 chr18 80373285 + 34307933 34307984 MER5B 177 - 125 176 90527 51 chain 547671 chr18 80373285 + 34331115 34337140 L1PA2 6032 + 3 6032 885 253 1 0 173 1 11 301 0 1 26 2 1 4410 1 0 833 1 0 5 3 0 15 chain 59586 chr18 80373285 + 34398545 34399482 L1PB1 5432 + 4534 5427 26489 91 1 0 4 1 0 197 0 1 276 41 22 13 1 0 9 1 0 11 5 1 9 6 4 39 0 1 8 2 1 10 6 5 44 1 0 16 2 0 6 16 6 19 2 0 5 1 0 14 2 0 14 0 2 8 1 0 22 8 12 18 2 0 5 chain 43606 chr18 80373285 + 34469447 34470032 MLT2A2 560 + 0 560 32379 399 3 14 77 36 0 70 chain 3849 chr18 80373285 + 34481915 34481958 tRNA-Gln-CAG 43 + 0 43 92511 43 chain 3571 chr18 80373285 + 34538241 34538287 MER5A 189 + 85 131 94649 46 chain 115665 chr18 80373285 + 34713942 34715216 L1PA2 6032 + 4728 6028 16296 451 1 0 326 4 31 492 chain 122547 chr18 80373285 + 34724779 34726260 L1PA7 6471 + 5005 6470 15106 129 16 4 486 2 0 660 0 1 176 3 0 9 chain 5571 chr18 80373285 + 34819950 34820031 MADE1 96 - 0 96 82927 38 6 21 37 chain 12068 chr18 80373285 + 34894302 34894455 L1P1 4361 + 1254 1407 66718 153 chain 557720 chr18 80373285 + 34894774 34900925 L1PA3long 6157 + 0 6157 259 1952 1 0 1236 0 1 77 0 4 147 0 1 528 0 1 2210 chain 4426 chr18 80373285 + 34964346 34964402 MLT2C2 476 + 0 56 88762 56 chain 24009 chr18 80373285 + 35033054 35033314 L1PA3long 6157 + 3686 3946 50780 260 chain 201952 chr18 80373285 + 35033314 35035522 L1PA3long 6157 + 3947 6157 9638 234 1 0 519 0 1 241 3 0 82 0 5 1128 chain 10040 chr18 80373285 + 35090319 35090444 L1MA6 2487 + 620 745 70331 125 chain 7762 chr18 80373285 + 35128526 35128650 MER2 342 + 165 279 75455 82 19 9 23 chain 25217 chr18 80373285 + 35153439 35153734 AluSq10 312 + 2 294 48917 281 3 0 11 chain 557396 chr18 80373285 + 35205779 35211809 L1PA2 6032 + 0 6031 276 493 0 1 5537 chain 284263 chr18 80373285 + 35216412 35220022 HERVH-int 3825 + 0 3825 7310 201 0 2 97 45 44 20 15 16 89 1 5 15 3 1 29 29 237 24 1 0 53 0 3 462 1 0 39 0 14 66 1 0 13 9 0 40 1 0 102 5 0 206 0 1 307 18 23 487 13 0 8 0 14 215 0 1 574 30 31 95 4 0 151 1 0 140 chain 26550 chr18 80373285 + 35277365 35277733 THE1C 375 + 0 375 46897 129 6 10 46 1 2 16 8 11 136 2 1 24 chain 4240 chr18 80373285 + 35277733 35277785 Tigger3c 601 + 485 537 89882 52 chain 28599 chr18 80373285 + 35304601 35305037 MER4A1 472 + 0 458 43956 20 5 6 7 1 0 188 45 65 114 2 4 54 chain 4568 chr18 80373285 + 35323027 35323094 LTR35B 538 + 38 141 87982 13 7 43 47 chain 35478 chr18 80373285 + 35532445 35532906 LTR2 463 + 0 463 37737 360 14 15 8 0 1 79 chain 470247 chr18 80373285 + 35627595 35632946 L1PA5 6144 + 0 5383 3849 146 9 15 364 0 1 1360 1 2 270 0 8 72 0 2 191 0 4 1080 8 9 151 3 0 669 0 8 947 0 4 80 chain 137580 chr18 80373285 + 35726897 35728842 L1PA16 3655 + 1114 3057 13299 94 9 8 54 63 62 112 0 1 295 0 1 54 1 0 8 0 2 100 0 1 122 0 1 75 0 4 118 0 1 276 0 1 15 8 4 146 6 5 77 0 5 94 10 8 43 1 0 21 1 0 60 0 2 7 7 5 10 3 0 4 4 0 47 chain 24706 chr18 80373285 + 35728933 35729294 THE1B 368 + 0 366 49720 13 2 0 27 6 11 114 7 8 25 0 2 88 10 9 69 chain 35438 chr18 80373285 + 35735339 35735800 LTR2 463 + 0 463 37760 212 17 17 65 0 1 65 14 15 88 chain 50201 chr18 80373285 + 35736892 35737574 L1PA13 3608 + 2719 3403 29484 180 0 1 157 4 3 64 5 4 31 1 0 19 0 1 89 7 5 62 1 0 56 0 6 6 chain 546381 chr18 80373285 + 35760310 35766409 L1PA3long 6157 + 0 6157 946 162 1 0 579 0 1 88 2 32 305 0 3 20 1 4 436 0 22 189 6 11 733 6 0 870 1 0 491 0 1 827 0 1 1382 chain 533526 chr18 80373285 + 35790620 35796747 L1PA5 6144 + 3 6144 1679 1441 0 4 380 6 11 163 1 2 746 0 1 399 1 0 26 2 1 1078 0 3 487 2 1 454 0 1 90 1 0 176 0 1 442 0 2 232 chain 288425 chr18 80373285 + 35812170 35815544 L1PA6 6164 + 2757 6162 7181 56 5 11 38 0 1 274 1 2 43 2 3 4 0 1 821 0 1 289 0 2 209 0 4 482 0 8 311 0 3 598 5 7 91 2 1 134 0 2 9 chain 32060 chr18 80373285 + 35844061 35844495 LTR7 482 + 7 476 40299 94 20 14 132 0 31 38 0 10 150 chain 278548 chr18 80373285 + 35844504 35848166 HERVH-int 3825 + 0 3825 7468 181 1 5 147 2 1 30 15 16 71 22 0 6 4 28 42 4 61 18 29 164 8 1 0 65 0 3 18 13 4 368 16 1 22 0 15 150 25 9 37 1 0 183 4 8 118 0 1 197 34 0 109 11 16 35 0 3 469 0 1 54 0 1 102 0 2 410 2 1 4 0 1 491 0 1 50 0 5 93 chain 31117 chr18 80373285 + 35849980 35850418 LTR7 482 + 0 474 41046 101 20 14 115 0 31 54 1 11 39 1 2 107 chain 26458 chr18 80373285 + 35855033 35855387 MLT2A1 477 + 2 374 47043 166 5 2 34 0 12 54 6 15 89 chain 445188 chr18 80373285 + 35855491 35861049 HERVL-int 5654 + 0 5654 4470 102 10 7 307 0 2 538 5 34 401 5 9 131 0 1 192 13 19 26 0 4 170 9 19 124 1 0 4 5 6 36 0 1 54 5 23 60 0 1 88 23 24 487 5 13 361 15 21 750 3 0 9 0 3 730 6 0 10 1 7 201 1 0 134 0 10 94 6 5 350 0 1 53 1 0 32 chain 33797 chr18 80373285 + 35861049 35861544 MLT2A1 477 + 0 476 38851 168 5 2 90 21 22 103 10 0 8 12 0 9 13 18 56 chain 33298 chr18 80373285 + 35866970 35867337 L1PA3long 6157 + 3320 3687 39264 367 chain 147064 chr18 80373285 + 35867337 35868956 L1PA3long 6157 + 3688 5307 12538 1619 chain 24752 chr18 80373285 + 35876411 35876767 THE1B 368 + 0 368 49654 45 26 41 83 1 0 31 2 0 168 chain 3867 chr18 80373285 + 35896056 35896119 L1MD2 1676 + 1446 1502 92374 49 7 0 7 chain 486722 chr18 80373285 + 35897486 35903007 L1PA4 6152 + 6 5522 3497 427 0 1 241 4 3 232 0 1 628 0 1 31 1 0 179 1 0 157 5 0 20 1 0 82 1 2 1160 1 0 769 0 1 1581 chain 13711 chr18 80373285 + 35911179 35911449 MLT1A0 366 + 56 317 64004 88 47 39 11 36 35 88 chain 3430 chr18 80373285 + 35933716 35933765 MER44B 551 + 1 50 95820 6 0 1 7 1 0 35 chain 23683 chr18 80373285 + 35958647 35958922 AluYc 301 + 11 288 51300 109 0 2 166 chain 33278 chr18 80373285 + 35968617 35969006 MER9a1 513 + 68 481 39280 181 0 22 30 0 2 178 chain 21780 chr18 80373285 + 35969431 35969718 AluSc5 308 + 11 289 54120 130 3 0 6 0 3 132 9 0 7 chain 4026 chr18 80373285 + 36064860 36064910 LTR12D 1347 + 1048 1097 91269 34 1 0 15 chain 7627 chr18 80373285 + 36078713 36078850 Tigger3b 1229 + 528 684 75807 37 29 44 17 0 4 54 chain 54419 chr18 80373285 + 36084218 36084954 L1PB1 5432 + 3733 4468 28077 229 6 5 299 0 1 3 1 0 40 2 0 67 15 17 74 chain 4984 chr18 80373285 + 36182614 36182688 MADE1 96 - 1 96 85727 36 5 26 33 chain 10016 chr18 80373285 + 36191046 36191285 MSTA 426 + 188 426 70389 18 14 0 10 58 52 6 1 0 22 7 27 103 chain 126069 chr18 80373285 + 36319176 36320668 L1PA6 6164 + 2203 3687 14544 101 3 0 30 11 0 539 0 1 208 6 10 478 0 1 116 chain 3690 chr18 80373285 + 36327394 36327438 MADE1 96 + 45 89 93677 44 chain 32267 chr18 80373285 + 36504383 36504749 L1PA3long 6157 + 5788 6152 40134 228 1 0 127 1 0 9 chain 71893 chr18 80373285 + 36553805 36554646 L1PA5 6144 + 5302 6142 23568 499 0 1 192 1 3 138 4 0 7 chain 9341 chr18 80373285 + 36579705 36579855 MLT1A1 405 + 245 403 71834 19 18 28 84 4 2 25 chain 24235 chr18 80373285 + 36715127 36715498 THE1C 375 + 6 375 50444 80 4 5 88 0 3 18 37 31 144 chain 3172 chr18 80373285 + 36813503 36813615 MER58A 224 + 45 157 98187 14 47 48 11 4 3 36 chain 5485 chr18 80373285 + 36819721 36819814 MLT1C 463 + 0 87 83290 20 6 0 4 1 0 6 1 0 5 0 2 50 chain 33777 chr18 80373285 + 36852330 36852775 LTR3B_ 500 + 6 457 38868 72 1 0 225 0 1 31 1 4 18 0 1 49 3 5 45 chain 61134 chr18 80373285 + 36936856 36937603 L1PA8A 6298 + 4829 5575 26078 102 2 0 26 16 15 394 0 1 122 6 9 54 2 0 23 chain 253785 chr18 80373285 + 36960034 36963061 L1P2 5180 + 194 3235 8141 53 1 0 206 0 2 60 6 5 263 1 16 450 0 1 659 0 1 221 0 1 185 11 5 473 0 2 67 0 1 306 1 0 64 chain 9829 chr18 80373285 + 36967918 36968059 L1PA13 3608 + 218 349 70763 69 0 3 14 13 0 45 chain 109733 chr18 80373285 + 36986322 36987498 L1HS 6032 + 4856 6032 17101 1176 chain 52777 chr18 80373285 + 37004344 37005228 L1PB1 5432 + 4555 5423 28647 71 3 0 163 11 19 145 1 0 141 9 14 6 5 0 24 1 0 4 22 17 9 2 0 51 1 0 10 15 14 38 1 0 8 39 37 20 2 0 24 1 0 21 1 0 13 11 8 11 chain 7279 chr18 80373285 + 37021664 37021776 LTR9B 643 + 445 561 76731 62 11 1 9 0 14 30 chain 257832 chr18 80373285 + 37025148 37028100 L1PA5 6144 + 2401 5377 8031 27 0 4 826 0 2 29 1 0 211 0 1 42 1 0 600 0 1 182 0 1 10 0 4 316 0 1 139 5 0 8 0 5 396 0 8 83 0 4 76 chain 71004 chr18 80373285 + 37059253 37060118 L1PA8 5853 + 4906 5815 23759 101 0 2 555 1 0 44 2 0 19 0 31 20 2 1 8 2 1 48 0 17 7 1 0 55 chain 3849 chr18 80373285 + 37060670 37060716 MADE1 96 + 49 96 92505 22 0 1 24 chain 45133 chr18 80373285 + 37072950 37073496 L1PA8A 6298 + 5115 5670 31505 83 0 1 266 0 1 19 4 6 100 4 9 70 chain 414387 chr18 80373285 + 37074885 37079490 L1PA4 6152 + 1539 6151 4971 2415 0 2 282 1 2 108 0 4 1799 chain 161557 chr18 80373285 + 37100067 37101938 L1P1 4361 + 27 1902 11641 93 20 6 10 10 24 886 1 4 792 0 1 59 chain 516486 chr18 80373285 + 37111556 37117641 L1PA5 6144 + 0 6132 2445 121 0 14 289 0 1 4 1 0 363 0 1 141 0 20 216 24 15 456 0 1 1560 1 0 11 5 0 45 0 1 159 0 1 739 1 2 187 0 4 940 4 0 6 0 4 11 0 1 313 0 18 188 0 1 119 7 6 174 chain 3135 chr18 80373285 + 37238154 37238192 MIRb 242 + 90 128 98495 38 chain 54283 chr18 80373285 + 37372014 37372641 L1PA5 6144 + 5517 6143 28125 476 1 0 150 chain 12845 chr18 80373285 + 37462751 37462924 MER30 238 + 58 238 65365 54 4 14 66 3 0 46 chain 21891 chr18 80373285 + 37605925 37606277 THE1B 368 + 0 368 53978 44 43 58 61 10 9 26 7 9 54 0 1 32 1 0 74 chain 7758 chr18 80373285 + 37654393 37654512 MER50B 698 + 488 605 75468 53 1 0 34 9 8 22 chain 21423 chr18 80373285 + 37742112 37742348 L1PA5 6144 + 5902 6138 54607 236 chain 567286 chr18 80373285 + 37819737 37825768 L1HS 6032 + 0 6031 34 6031 chain 47298 chr18 80373285 + 37842312 37842824 L1PA3long 6157 + 5645 6157 30537 512 chain 12380 chr18 80373285 + 37875261 37875407 HERVL-int 5654 + 651 797 66178 146 chain 30926 chr18 80373285 + 37876805 37877260 MLT2A1 477 + 0 477 41194 170 4 1 63 1 0 4 0 1 88 3 0 47 35 63 40 chain 323182 chr18 80373285 + 37877292 37881623 HERVL-int 5654 + 32 5654 6351 34 1 0 4 0 1 10 0 1 214 0 11 54 4 0 82 5 2 493 8 12 683 0 1 96 0 2 956 2 1 5 0 1 51 0 1598 531 22 41 32 340 0 277 5 4 128 1 4 293 chain 25615 chr18 80373285 + 37912800 37913176 THE1D 372 + 2 372 48292 74 20 1 51 0 4 34 6 10 14 3 8 174 chain 155085 chr18 80373285 + 37940345 37942042 L1PA3long 6157 + 4460 6157 12050 1697 chain 90654 chr18 80373285 + 37943245 37944375 L1PA7 6471 + 3362 4487 19563 141 1 0 715 25 16 38 3 4 72 0 3 8 1 2 126 chain 12311 chr18 80373285 + 38060245 38060454 HSMAR2 1300 + 1081 1293 66273 7 1 0 101 15 24 35 11 7 16 1 0 22 chain 117091 chr18 80373285 + 38152307 38153981 L1PREC2 3366 + 908 2554 16039 227 16 17 95 15 14 44 9 17 332 0 3 108 5 0 56 1 4 90 25 0 10 3 17 15 22 7 55 8 4 118 1 0 4 0 1 333 24 17 58 chain 67700 chr18 80373285 + 38267954 38268826 L1PA7 6471 + 5646 6455 24518 616 63 0 34 0 1 4 1 0 154 chain 114561 chr18 80373285 + 38394175 38395612 HERVL-int 5654 + 3002 5654 16467 763 19 1224 233 1 0 4 0 1 113 0 6 20 0 3 212 2 3 70 chain 110852 chr18 80373285 + 38408789 38410318 THE1B-int 1605 + 34 1599 16959 73 0 3 158 0 2 156 0 25 147 0 1 71 0 3 14 111 112 558 0 1 241 chain 25841 chr18 80373285 + 38473085 38473426 THE1B 368 + 0 368 47952 40 0 15 14 0 14 80 6 5 34 1 0 166 chain 34136 chr18 80373285 + 38535436 38535984 LTR3B_ 500 + 0 500 38608 11 1 0 62 1 0 3 1 0 170 14 0 54 1 2 36 11 13 21 0 1 25 60 25 34 2 2 41 chain 34569 chr18 80373285 + 38653534 38654018 MLT2A1 477 + 0 477 38306 96 0 1 39 14 15 17 3 7 119 10 9 81 0 1 14 2 0 6 2 0 14 10 0 46 0 1 11 chain 23422 chr18 80373285 + 38668706 38669026 MLT2A1 477 + 70 385 51725 98 5 2 101 10 8 106 chain 12361 chr18 80373285 + 38669322 38669475 L1PA8A 6298 + 6137 6290 66214 153 chain 184201 chr18 80373285 + 38671288 38673613 HERVL-int 5654 + 2813 5633 10376 208 7 8 359 0 1 290 4 5 465 6 17 89 0 1 242 0 1 125 0 3 70 5 476 49 1 2 142 0 3 42 0 1 221 chain 6418 chr18 80373285 + 38673635 38673707 MLT2A1 477 + 78 150 79613 72 chain 36144 chr18 80373285 + 38720102 38720516 LTR10C 591 + 0 415 37317 334 0 1 80 chain 194007 chr18 80373285 + 38762558 38765290 L1PB1 5432 + 2695 5420 9929 122 2 1 7 0 1 15 2 1 32 0 4 8 0 3 53 10 12 171 7 10 561 2 0 27 8 10 451 3 4 150 7 12 267 0 4 9 15 20 450 0 1 13 3 0 20 1 0 13 1 0 9 6 2 9 2 0 53 2 1 11 6 5 44 1 0 13 27 15 18 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 5247 chr18 80373285 + 38952149 38952214 MER2 342 + 146 211 84460 65 chain 335259 chr18 80373285 + 39122634 39126345 L1PA3long 6157 + 2444 6157 6140 274 0 1 2664 0 1 773 chain 198464 chr18 80373285 + 39126799 39129740 L1PB1 5432 + 2585 5422 9758 57 12 1 191 1 0 223 1 0 225 1 0 449 2 0 3 12 0 228 0 1 90 7 14 124 3 4 293 0 3 13 23 8 289 5 9 14 7 10 18 0 3 131 30 24 41 1 0 47 62 16 24 1 0 6 1 0 13 6 2 9 2 0 51 1 0 18 1 0 44 1 0 11 28 17 17 3 1 5 1 0 12 12 10 19 1 0 18 1 0 13 1 0 18 chain 125591 chr18 80373285 + 39227270 39228844 THE1A-int 1579 + 0 1579 14615 270 0 2 72 2 0 94 0 2 62 2 1 480 8 7 504 0 5 80 chain 27191 chr18 80373285 + 39228844 39229197 THE1A 353 + 0 353 45982 111 1 0 39 1 2 201 chain 226091 chr18 80373285 + 39254248 39256742 L1PA3long 6157 + 3657 6152 8858 838 0 2 810 1 0 845 chain 2502 chr18 80373285 + 39309616 39309646 LTR12C 1709 + 987 1017 103643 30 chain 3549 chr18 80373285 + 39309665 39309705 LTR12C 1709 + 795 835 94860 40 chain 3393 chr18 80373285 + 39382337 39382373 MER21C 908 + 341 377 96152 36 chain 344493 chr18 80373285 + 39391647 39396205 L1PA8 5853 + 1235 5825 5995 33 0 1 46 13 14 35 4 3 156 8 23 143 1 4 142 0 2 60 8 10 74 15 19 17 2 1 62 1 2 54 4 0 332 7 5 446 3 1 10 3 7 452 4 7 96 0 1 313 0 3 150 0 2 245 20 21 4 1 0 145 2 1 113 0 1 66 6 10 25 1 0 414 0 1 25 0 1 531 1 0 46 2 0 57 0 1 10 28 26 56 1 0 65 chain 376995 chr18 80373285 + 39425816 39431541 L1PB1 5432 + 22 5427 5533 173 20 23 56 8 20 10 29 30 76 0 2 70 4 7 12 4 5 44 6 0 25 0 1 93 162 5 94 5 6 299 0 14 51 18 8 7 0 10 55 0 1 82 3 2 89 32 11 7 4 0 267 1 0 4 21 13 549 13 13 91 9 8 131 14 2 7 1 0 39 0 1 189 0 4 97 1 0 13 7 6 366 0 1 276 0 1 240 0 8 226 0 2 20 0 1 312 1 2 176 0 1 70 2 0 82 3 0 12 1 0 4 0 1 57 7 6 107 21 20 160 1 2 102 205 71 49 1 0 17 1 0 43 42 29 19 7 4 15 2 0 24 1 0 11 11 10 13 1 0 13 1 0 6 1 0 4 chain 10781 chr18 80373285 + 39426459 39426595 L1PB1 5432 - 3620 3755 68897 107 1 0 28 chain 101944 chr18 80373285 + 39444852 39446156 L1P3 4156 + 2839 4139 18071 309 19 0 346 0 1 27 0 4 77 1 0 47 1 13 151 2 5 89 2 0 197 1 0 8 1 0 26 chain 53710 chr18 80373285 + 39447052 39447677 L1PA7 6471 + 5844 6465 28319 317 0 1 117 0 1 30 2 0 148 4 0 7 chain 553769 chr18 80373285 + 39565592 39571600 L1PA2 6032 + 1 6016 499 256 1 0 2573 0 2 305 0 2 2457 2 6 414 chain 2957 chr18 80373285 + 39609558 39609594 LTR40a 516 + 112 149 100306 9 0 1 27 chain 10211 chr18 80373285 + 39609597 39609777 MER30B 195 + 5 194 69990 18 10 11 17 27 35 108 chain 16652 chr18 80373285 + 39694961 39695295 LTR49 580 + 6 343 60211 27 1 5 20 35 36 41 1 0 30 17 14 33 0 1 43 26 27 60 chain 3608 chr18 80373285 + 39698080 39698123 MLT2B3 573 + 530 573 94357 43 chain 29776 chr18 80373285 + 39715669 39715979 AluYg6 310 + 0 310 42269 310 chain 21748 chr18 80373285 + 39736105 39736625 L1PB1 5432 + 4965 5423 54173 112 8 6 15 46 18 22 1 0 4 3 2 13 22 16 47 26 24 37 1 0 15 2 0 6 2 1 10 9 0 13 3 1 5 1 0 14 2 0 24 1 0 16 6 5 13 1 0 13 1 0 6 chain 122798 chr18 80373285 + 39755929 39757653 L1PA11 4918 + 1312 3012 15060 34 22 20 56 0 3 139 27 28 193 0 6 24 3 0 381 2 0 7 0 2 6 1 0 29 5 1 230 36 19 57 11 2 368 6 7 56 0 1 31 chain 5052 chr18 80373285 + 39848101 39848179 MADE1 96 + 0 94 85403 24 6 22 48 chain 2997 chr18 80373285 + 39852133 39852171 L1MD2 1676 + 1322 1360 99863 38 chain 548971 chr18 80373285 + 39924369 39930434 L1PA2 6032 + 0 6030 810 257 1 0 318 18 0 165 0 2 1388 0 2 1288 0 1 770 0 1 445 22 0 1393 chain 23628 chr18 80373285 + 39956527 39956880 THE1A 353 + 0 351 51385 15 2 0 32 0 1 46 1 0 14 16 17 68 6 5 104 1 0 4 0 1 44 chain 5876 chr18 80373285 + 39958454 39958555 THE1A 353 + 0 96 81577 15 2 0 26 6 7 35 4 0 13 chain 16805 chr18 80373285 + 39958594 39958816 THE1A 353 + 134 353 60025 64 1 0 103 2 0 52 chain 26383 chr18 80373285 + 40070159 40070512 THE1C 375 + 0 350 47144 74 8 9 30 1 0 12 3 0 225 chain 12673 chr18 80373285 + 40167076 40167252 Tigger3b 1229 + 119 314 65673 101 8 27 67 chain 56423 chr18 80373285 + 40245577 40246305 LTR12 884 + 0 883 27448 222 0 154 333 1 0 67 8 10 97 chain 16468 chr18 80373285 + 40325848 40326031 L1PA3long 6157 + 4517 4700 60417 183 chain 103809 chr18 80373285 + 40513388 40514653 L1PA7 6471 + 3757 5026 17837 78 0 1 421 0 1 415 0 2 351 chain 24621 chr18 80373285 + 40630949 40631208 AluYa5 310 + 45 304 49837 259 chain 91534 chr18 80373285 + 40702348 40703529 L1PA8 5853 + 4677 5853 19411 333 2 0 556 0 2 42 2 0 63 7 6 9 2 1 9 3 4 38 3 2 16 4 3 92 chain 135577 chr18 80373285 + 40794099 40796111 L1PA8 5853 + 3723 5679 13481 109 7 8 365 0 2 188 0 1 68 22 0 192 3 9 188 0 1 79 1 0 54 1 0 22 2 0 35 6 7 203 274 235 73 1 0 46 2 0 71 chain 169454 chr18 80373285 + 40824105 40826277 L1PA8A 6298 + 4078 6291 11129 178 1 0 4 19 20 575 0 3 614 0 4 12 8 7 73 0 2 327 0 9 14 6 7 52 0 23 19 1 2 239 2 1 28 chain 318640 chr18 80373285 + 40844862 40848268 L1HS 6032 + 2619 6032 6429 247 0 7 3159 chain 20850 chr18 80373285 + 40891854 40892221 THE1C 375 + 0 364 55309 57 16 26 8 14 0 77 0 1 17 35 34 58 0 1 52 0 1 18 1 0 14 chain 28445 chr18 80373285 + 40925855 40926161 AluYa5 310 + 0 303 44203 132 3 0 171 chain 143461 chr18 80373285 + 40967561 40969516 L1PB1 5432 + 2468 4413 12815 32 3 0 50 0 1 171 8 8 13 0 1 75 8 0 4 1 0 184 9 0 7 0 1 41 6 5 332 3 0 221 0 1 74 6 11 27 2 5 24 0 1 12 0 1 183 0 3 6 7 5 196 0 1 57 3 2 190 chain 51459 chr18 80373285 + 41050665 41051318 PABL_A 660 + 3 658 29062 67 0 5 10 9 5 136 0 1 431 chain 287861 chr18 80373285 + 41086465 41089857 L1P2 5180 + 1328 4722 7205 991 2 0 460 3 4 381 5 6 7 1 0 11 0 1 229 1 2 103 0 2 367 2 1 278 1 2 468 1 0 81 chain 39488 chr18 80373285 + 41169371 41169814 L1PA5 6144 + 5689 6131 35020 202 1 0 240 chain 76418 chr18 80373285 + 41183867 41184824 LTR5_Hs 974 + 0 961 22454 459 0 4 196 9 11 106 7 7 47 3 1 130 chain 117849 chr18 80373285 + 41224167 41225697 THE1A-int 1579 + 0 1579 15911 369 0 20 41 7 23 228 1 0 429 0 4 28 1 5 12 8 13 142 1 2 263 chain 37003 chr18 80373285 + 41237576 41238041 L1PA8A 6298 + 5801 6281 36731 282 0 14 82 1 2 100 chain 27473 chr18 80373285 + 41327539 41327875 THE1B-int 1605 + 34 370 45608 336 chain 27826 chr18 80373285 + 41342830 41343121 AluYb8 318 + 18 309 45140 291 chain 17571 chr18 80373285 + 41561285 41561615 THE1D 372 + 18 332 59156 27 9 0 9 9 0 20 3 0 6 7 11 75 42 44 14 1 0 108 chain 554262 chr18 80373285 + 41631742 41637769 L1PA2 6032 + 3 6028 462 310 2 0 42 0 1 971 2 1 4700 chain 13163 chr18 80373285 + 41719394 41719621 L1MB3 1562 + 1179 1425 64835 20 1 0 15 1 21 54 0 1 55 11 10 22 8 9 35 1 0 4 chain 564774 chr18 80373285 + 41775014 41781045 L1HS 6032 + 0 6031 99 898 1 0 1848 0 1 3284 chain 134812 chr18 80373285 + 41865574 41867123 LTR12C 1709 + 0 1709 13555 699 0 159 254 1 0 5 3 1 106 0 4 481 chain 10984 chr18 80373285 + 42051866 42051985 L1PA4 6152 + 6033 6152 68574 119 chain 13845 chr18 80373285 + 42062364 42062560 MER30 238 + 26 238 63800 85 4 0 6 2 21 84 1 2 14 chain 17924 chr18 80373285 + 42104533 42104743 L1PA5 6144 + 5903 6137 58727 149 1 24 11 0 1 49 chain 67160 chr18 80373285 + 42123368 42124222 L1PA10 4194 + 3299 4150 24659 29 0 1 67 3 0 113 1 2 8 0 3 465 1 0 57 1 0 72 3 0 34 chain 35801 chr18 80373285 + 42189786 42190244 LTR22A 463 + 6 463 37524 127 8 7 323 chain 15768 chr18 80373285 + 42203640 42203982 THE1B 368 + 0 347 61326 106 31 32 39 61 66 63 26 25 16 chain 122980 chr18 80373285 + 42204003 42205557 THE1B-int 1605 + 0 1598 15026 428 1 26 709 1 13 168 0 5 74 0 1 16 0 1 157 chain 76828 chr18 80373285 + 42233837 42235115 L1PB1 5432 + 4126 5372 22369 89 9 4 158 14 15 111 7 8 24 0 2 42 0 5 25 2 10 9 33 0 237 11 7 24 0 23 83 1 0 81 22 24 7 3 0 24 8 6 12 7 3 9 2 0 51 1 0 13 5 4 45 1 0 15 24 12 16 5 3 5 1 0 14 2 0 26 chain 32754 chr18 80373285 + 42273619 42274071 MLT2A1 477 + 2 477 39712 169 4 1 7 0 1 22 0 1 182 10 0 18 4 38 36 chain 24080 chr18 80373285 + 42284892 42285187 AluSc5 308 + 9 303 50680 55 2 0 214 0 1 24 chain 22742 chr18 80373285 + 42461840 42462228 LTR7B 505 + 0 505 52770 34 0 1 17 1 0 56 0 10 53 12 26 22 19 40 19 1 75 60 2 1 27 17 16 48 chain 32385 chr18 80373285 + 42465284 42465656 HERVH-int 3825 + 3453 3825 40050 372 chain 24814 chr18 80373285 + 42469321 42469739 LTR7B 505 + 0 495 49568 103 6 16 46 16 37 27 23 31 29 1 0 22 11 51 68 25 24 41 chain 58775 chr18 80373285 + 42500963 42501676 L1PA7 6471 + 5744 6469 26746 50 0 10 216 0 1 115 0 1 332 chain 5111 chr18 80373285 + 42518347 42518407 Tigger3c 601 + 451 511 84698 60 chain 8044 chr18 80373285 + 42518407 42518502 Tigger3c 601 + 451 546 74763 95 chain 62981 chr18 80373285 + 42572553 42573328 L1PA7 6471 + 5693 6466 25634 598 26 26 142 2 0 7 chain 8227 chr18 80373285 + 42598469 42598778 MLT1A0 366 + 6 342 74333 37 191 218 81 chain 32390 chr18 80373285 + 42637427 42637784 L1PA5 6144 + 5786 6143 40047 357 chain 490286 chr18 80373285 + 42660319 42665923 L1PA4 6152 + 1 5517 3413 579 1 0 253 85 0 1821 0 1 31 0 1 2607 4 0 223 chain 2554 chr18 80373285 + 42688251 42688295 LTR82A 830 + 25 68 103369 25 0 2 6 3 0 10 chain 271693 chr18 80373285 + 42714003 42717016 L1PA3long 6157 + 3144 6155 7669 31 1 2 679 1 0 451 1 0 334 1 0 1514 chain 183662 chr18 80373285 + 42724405 42726781 L1PA8 5853 + 3476 5853 10401 169 0 1 542 0 2 23 10 6 82 0 1 73 1 2 354 3 4 268 3 0 5 0 2 60 18 17 464 8 11 38 10 8 8 7 0 25 0 3 34 15 13 49 2 1 19 4 11 82 chain 30221 chr18 80373285 + 42737045 42737433 LTR7 482 + 0 477 41827 67 0 48 120 0 31 48 0 10 153 chain 256517 chr18 80373285 + 42737440 42740687 HERVH-int 3825 + 0 3825 8073 386 0 1 28 13 381 230 0 3 96 0 4 100 16 1 72 3 5 124 9 0 27 0 2 10 1 0 300 29 31 271 24 29 49 0 1 257 0 1 5 5 4 414 0 1 214 32 34 39 8 218 260 0 2 225 chain 30177 chr18 80373285 + 42741944 42742345 LTR7 482 + 0 482 41867 69 8 46 119 1 32 48 0 10 62 0 2 94 chain 35140 chr18 80373285 + 42743801 42744300 LTR7 482 + 0 482 37931 157 51 0 73 0 31 104 1 2 52 12 14 49 chain 4392 chr18 80373285 + 42759057 42759124 MLT2B1 522 + 441 514 88933 27 3 9 37 chain 120666 chr18 80373285 + 42766098 42767673 THE1A-int 1579 + 0 1579 15415 487 1 3 7 1 0 79 1 0 87 26 27 61 0 1 178 5 6 427 0 1 215 chain 116482 chr18 80373285 + 42795065 42796475 LTR12C 1709 + 0 1709 16134 259 6 22 207 0 1 82 0 2 88 0 278 173 1 0 4 4 2 34 0 1 26 20 20 25 0 4 481 chain 34516 chr18 80373285 + 42964258 42964784 PRIMA4_LTR 623 + 28 613 38342 156 0 1 3 5 0 69 31 30 14 0 1 4 1 0 26 0 59 10 3 0 30 1 0 6 10 12 57 0 1 84 0 6 16 chain 25612 chr18 80373285 + 42991496 42991945 LTR7 482 + 0 470 48297 50 49 36 15 15 14 109 8 40 101 1 2 52 12 14 37 chain 262532 chr18 80373285 + 42991971 42995147 HERVH-int 3825 + 652 3824 7895 45 1 0 91 3 7 43 2 0 295 0 4 129 6 3 163 11 1 139 5 0 113 4 31 686 15 16 598 1 0 658 23 5 145 chain 42315 chr18 80373285 + 43068886 43069436 MER41C 542 + 2 542 33180 226 6 9 79 13 0 226 chain 203784 chr18 80373285 + 43082270 43084891 L1PA8 5853 + 3235 5853 9576 154 7 6 41 0 1 222 7 4 203 4 6 259 0 1 446 4 0 394 39 37 512 0 3 38 1 0 46 2 0 70 25 24 38 2 1 96 0 5 11 chain 9027 chr18 80373285 + 43095411 43095518 L1PA6 6164 + 6053 6161 72502 54 0 1 53 chain 68841 chr18 80373285 + 43131758 43132553 L1PA7 6471 + 5672 6467 24251 795 chain 26480 chr18 80373285 + 43133551 43133894 THE1A 353 + 0 341 47012 108 10 9 84 1 0 140 chain 104608 chr18 80373285 + 43139339 43140813 LTR12C 1709 + 0 1709 17742 278 17 18 167 4 45 6 40 0 8 0 1 196 0 118 234 0 47 97 46 16 50 2 1 41 1 0 18 1 0 98 0 101 87 1 0 82 chain 52242 chr18 80373285 + 43226056 43226771 L1PB 1623 + 411 1131 28802 76 1 0 180 0 3 101 0 1 4 65 66 138 0 1 150 chain 4752 chr18 80373285 + 43229799 43229873 MADE1 96 + 6 95 86952 36 1 17 21 1 0 15 chain 27453 chr18 80373285 + 43232001 43232583 L1PB1 5432 + 4888 5404 45633 45 1 0 59 27 28 83 49 11 20 1 0 13 16 11 11 2 0 22 0 1 28 2 1 16 1 0 44 1 0 13 28 17 16 8 5 14 2 0 24 7 6 15 1 0 13 chain 547231 chr18 80373285 + 43285925 43292078 L1PA4 6152 + 1 6151 907 459 6 0 84 0 1 35 1 0 447 0 1 424 0 1 1731 0 1 2966 chain 145051 chr18 80373285 + 43298074 43300398 L1PA2 6032 + 3726 6030 12684 478 28 0 677 0 8 1141 chain 249720 chr18 80373285 + 43323961 43326679 L1PA2 6032 + 3311 6030 8244 75 0 1 2643 chain 43246 chr18 80373285 + 43337663 43338801 L1PB 1623 + 411 971 32615 73 1 0 106 6 1 37 1 0 166 570 0 92 2 1 84 chain 48565 chr18 80373285 + 43394903 43395454 L1PA5 6144 + 5592 6143 30096 551 chain 76718 chr18 80373285 + 43448821 43449727 L1PA6 6164 + 5253 6162 22389 4 0 1 56 1 5 837 2 0 6 chain 88057 chr18 80373285 + 43451583 43452526 L1HS 6032 + 5087 6030 20036 943 chain 440655 chr18 80373285 + 43494452 43500082 HERVL-int 5654 + 3 5654 4567 245 0 2 40 16 16 135 1 3 119 5 1 20 0 6 1147 0 4 59 1 2 351 1 0 178 9 8 361 1 2 103 0 1 766 1 0 32 0 1 487 10 11 390 0 1 515 0 6 209 6 7 139 0 1 194 7 7 82 chain 17919 chr18 80373285 + 43518636 43519003 THE1D 372 + 0 370 58730 90 131 134 132 1 0 4 0 1 9 chain 43394 chr18 80373285 + 43545510 43547039 L1PA3long 6157 + 4641 6157 32516 654 13 0 862 chain 28245 chr18 80373285 + 43586734 43587038 AluYb9 318 + 8 309 44494 124 3 0 177 chain 32914 chr18 80373285 + 43591289 43591775 MER75 514 + 32 514 39576 54 12 4 16 1 0 168 21 24 74 1 2 122 1 2 16 chain 59826 chr18 80373285 + 43617706 43618403 L1PA5 6144 + 5432 6138 26424 80 0 1 323 0 8 294 chain 205043 chr18 80373285 + 43644019 43646364 L1PA5 6144 + 3785 6144 9538 257 1 0 95 0 1 350 1 0 44 0 6 90 1 0 51 0 4 129 0 1 90 6 3 97 0 5 309 0 3 824 chain 113381 chr18 80373285 + 43653678 43655310 L1PA8 5853 + 4166 5815 16621 174 1 0 71 4 5 173 0 19 71 0 1 27 0 1 296 31 35 33 26 28 333 0 1 63 5 0 67 1 0 44 2 0 44 0 3 27 1 0 19 2 1 38 2 1 19 3 2 21 14 12 20 chain 3449 chr18 80373285 + 43745730 43745770 MLT2B4 540 + 431 471 95664 40 chain 13084 chr18 80373285 + 43750688 43750844 L1PA4 6152 + 5989 6151 64957 12 0 1 130 0 5 14 chain 82796 chr18 80373285 + 43768370 43769490 L1PA11 4918 + 1735 2847 21064 75 11 8 203 0 1 71 12 6 135 7 0 46 3 6 9 0 3 262 6 7 280 chain 50928 chr18 80373285 + 43820640 43821305 L1PB1 5432 + 4429 5098 29230 170 3 2 19 3 4 54 0 1 110 0 2 15 0 1 291 chain 502321 chr18 80373285 + 43835499 43841614 L1PA6 6164 + 0 6150 3049 203 0 1 31 0 2 150 26 18 64 2 4 44 0 2 48 1 0 172 25 26 22 0 17 124 0 4 104 0 1 415 1 0 419 16 21 212 9 13 208 5 0 185 0 1 372 0 1 305 0 1 27 0 1 312 8 6 167 0 1 43 0 1 204 0 1 217 0 1 156 0 1 44 0 2 273 1 0 26 1 0 440 0 1 4 1 0 4 0 1 140 1 0 55 0 4 828 chain 10866 chr18 80373285 + 43858367 43858488 L1PA2 6032 + 5910 6031 68746 121 chain 170655 chr18 80373285 + 43871291 43873166 L1PA3long 6157 + 4281 6157 11072 4 0 1 1871 chain 78027 chr18 80373285 + 43890453 43891354 L1PA5 6144 + 5245 6144 22093 49 3 0 516 1 2 332 chain 36322 chr18 80373285 + 43918269 43918655 L1HS 6032 + 5644 6030 37196 386 chain 9571 chr18 80373285 + 43926782 43926982 MSTB 430 + 208 407 71328 8 1 0 49 52 0 8 7 59 75 chain 20288 chr18 80373285 + 43938047 43938269 AluYb8 318 + 98 317 56028 34 3 0 185 chain 510151 chr18 80373285 + 43983989 43990178 L1PA6 6164 + 0 6157 2762 497 14 13 278 34 0 191 6 0 280 9 10 183 1 0 78 0 1 197 1 0 606 1 0 855 0 1 37 0 1 474 0 2 66 0 1 599 0 4 274 4 5 303 0 1 600 0 1 460 0 1 102 4 1 35 chain 6890 chr18 80373285 + 44073237 44073335 Tigger1 2417 + 54 151 77994 49 9 8 40 chain 8149 chr18 80373285 + 44092477 44092676 L1PB1 5432 + 5237 5422 74523 28 0 1 13 0 3 14 1 0 4 1 0 4 21 13 9 3 1 5 1 0 12 2 0 26 1 0 13 13 12 9 1 0 18 chain 51938 chr18 80373285 + 44094775 44095468 LTR30 714 + 5 714 28890 248 0 5 185 7 18 137 0 2 31 7 4 11 16 18 28 1 0 22 chain 20921 chr18 80373285 + 44106596 44106839 L1PA7 6471 + 6207 6450 55233 243 chain 5814 chr18 80373285 + 44118959 44119028 MER41A 554 + 399 468 81855 69 chain 7000 chr18 80373285 + 44135303 44135389 MER41B 635 + 0 86 77598 86 chain 3371 chr18 80373285 + 44220832 44220869 MLT2B1 522 + 485 522 96389 37 chain 14605 chr18 80373285 + 44268761 44269375 L1MA6 2487 + 1860 2404 62792 16 26 25 19 11 10 48 1 0 19 28 29 7 2 0 33 1 0 3 2 0 37 6 3 27 1 0 8 263 208 27 3 0 18 1 0 7 chain 274334 chr18 80373285 + 44275391 44278418 L1PA3long 6157 + 3135 6157 7594 1013 2 0 1967 3 0 42 chain 503029 chr18 80373285 + 44299898 44305988 L1PA5 6144 + 2 6130 3031 44 7 10 64 0 14 618 5 12 181 2 1 67 1 0 144 21 12 93 6 7 162 0 2 13 0 4 143 0 1 176 1 3 420 0 4 235 0 1 375 2 3 340 1 0 13 1 0 16 1 5 128 0 1 159 6 0 7 0 1 27 0 2 603 0 1 121 0 3 9 0 1 834 8 8 203 1 5 395 5 5 128 0 1 174 2 1 128 chain 49966 chr18 80373285 + 44329277 44329850 L1PA4 6152 + 4766 5343 29578 81 1 2 39 1 0 416 0 4 35 chain 22232 chr18 80373285 + 44340991 44341281 L1PB 1623 + 668 957 53504 140 2 0 90 0 1 58 chain 174437 chr18 80373285 + 44350638 44352593 L1PA3long 6157 + 4190 6150 10872 452 0 1 471 1 0 45 0 5 986 chain 412506 chr18 80373285 + 44375148 44381180 L1PA8 5853 + 50 5846 4995 20 3 1 11 1 0 11 50 15 118 25 25 23 53 34 272 8 20 284 3 0 111 0 8 50 28 26 51 10 6 10 11 4 6 0 1 29 0 1 4 0 2 44 0 1 42 0 3 95 9 11 91 5 6 63 8 7 91 1 0 238 7 3 123 0 4 22 1 0 181 0 2 62 0 7 65 1 0 131 0 4 106 21 16 272 312 32 18 4 8 273 1 0 171 2 0 63 0 1 43 0 9 141 0 1 196 29 33 88 1 0 14 0 17 102 5 14 130 0 1 131 0 1 14 5 0 244 0 1 33 1 0 50 0 13 63 0 1 106 1 0 90 1 23 69 0 1 16 8 10 88 4 5 224 0 2 97 0 1 43 1 0 15 0 4 25 2 0 10 20 24 24 0 1 15 1 0 9 1 0 47 4 3 19 1 0 86 chain 211022 chr18 80373285 + 44412689 44415465 L1PA8A 6298 + 3462 6287 9318 4 0 1 22 3 4 141 23 24 219 1 8 218 1 0 184 0 2 103 6 8 96 0 1 144 0 6 172 1 0 494 0 1 179 0 5 10 0 1 244 0 1 33 0 12 30 0 1 131 6 9 6 2 0 215 5 13 83 chain 518599 chr18 80373285 + 44415924 44422383 L1PA7 6471 + 1 6470 2336 43 0 1 535 0 1 78 0 1 218 15 16 668 0 1 328 0 1 57 0 1 69 0 1 176 1 2 25 0 1 407 2 1 52 1 2 301 1 2 107 0 4 137 3 4 30 0 1 64 1 0 161 1 0 83 0 2 675 1 2 596 0 1 92 6 1 207 0 1 155 0 1 86 5 6 92 14 1 126 0 5 69 0 2 766 1 0 4 chain 3671 chr18 80373285 + 44423556 44423596 L1PA8 5853 + 5773 5813 93804 40 chain 3302 chr18 80373285 + 44423596 44423633 L1PA8 5853 + 5814 5851 96994 37 chain 298968 chr18 80373285 + 44444782 44448159 L1PA5 6144 + 2760 6138 6863 490 0 1 2171 0 1 388 2 1 326 chain 23964 chr18 80373285 + 44492548 44492914 THE1B 368 + 0 368 50849 15 2 0 25 1 6 82 1 4 40 2 1 29 19 17 75 1 0 74 chain 40230 chr18 80373285 + 44523277 44523732 L1PA5 6144 + 5684 6139 34498 455 chain 7306 chr18 80373285 + 44556662 44556744 L1PA8 5853 + 5771 5853 76648 82 chain 8685 chr18 80373285 + 44563850 44564159 MLT1C 463 + 153 455 73244 10 0 3 28 24 0 31 0 5 17 0 1 6 149 157 44 chain 128568 chr18 80373285 + 44580550 44582038 LTR12C 1709 + 0 1709 14212 837 1 0 43 0 119 112 1 0 6 2 0 107 0 4 168 0 102 211 chain 3752 chr18 80373285 + 44627548 44627692 MER5B 177 + 4 148 93221 43 81 82 6 1 0 13 chain 40659 chr18 80373285 + 44800814 44801289 L1PA5 6144 + 5668 6143 34180 39 2 1 422 2 3 10 chain 2784 chr18 80373285 + 44877196 44877226 MER5C1 258 + 94 124 101746 30 chain 28576 chr18 80373285 + 44937170 44937476 AluYa5 310 + 0 303 43990 132 3 0 171 chain 25064 chr18 80373285 + 44989632 44989897 AluYa5 310 + 45 310 49176 265 chain 4327 chr18 80373285 + 45088100 45088151 MER89 557 + 2 53 89307 51 chain 56086 chr18 80373285 + 45225933 45226564 L1PA5 6144 + 5247 5879 27540 169 0 1 462 chain 39817 chr18 80373285 + 45271514 45272090 L1MA1 4479 + 3239 3809 34802 12 1 0 5 11 7 26 0 5 21 0 2 72 3 0 131 1 0 195 44 40 54 chain 4516 chr18 80373285 + 45290784 45290842 MER33 330 + 252 318 88229 40 0 8 18 chain 12509 chr18 80373285 + 45394841 45395193 L1MB1 2102 + 1621 1907 65973 46 9 10 5 1 0 17 1 0 10 10 11 18 1 0 5 14 12 18 86 24 75 10 9 26 chain 42943 chr18 80373285 + 45455118 45455647 L1PA7 6471 + 5933 6464 32813 266 0 1 217 14 15 32 chain 93283 chr18 80373285 + 45613361 45614794 THE1D-int 1627 + 0 1451 19147 104 17 13 402 4 5 51 10 14 56 25 26 24 34 38 29 0 15 160 8 9 192 85 83 142 0 1 52 3 0 35 chain 20698 chr18 80373285 + 45615279 45615668 THE1D 372 + 0 367 55501 54 36 27 94 1 0 6 34 35 9 4 0 79 21 12 51 chain 4646 chr18 80373285 + 45684992 45685045 MER63A 208 + 71 124 87553 53 chain 536458 chr18 80373285 + 45694475 45700587 L1PA4 6152 + 7 6143 1537 861 0 2 199 0 3 347 0 1 900 1 0 225 0 1 1142 0 1 50 0 1 522 0 3 369 0 1 241 0 2 607 0 10 245 0 1 157 2 1 244 chain 3230 chr18 80373285 + 45734481 45734548 L1MB3 1562 + 1441 1507 97662 26 19 18 22 chain 24612 chr18 80373285 + 45759127 45759537 PRIMA4_LTR 623 + 214 623 49851 14 0 1 69 18 59 13 4 5 13 47 0 37 0 4 5 1 0 189 chain 60910 chr18 80373285 + 45791637 45792359 L1PA6 6164 + 5442 6159 26133 116 0 1 439 14 8 153 chain 278391 chr18 80373285 + 45806340 45810415 L1PBa1 4058 + 10 4040 7478 22 15 5 10 4 2 7 1 0 84 7 18 51 33 19 29 33 16 64 16 15 39 5 6 27 13 14 123 20 17 32 20 20 16 24 12 446 1 0 231 1 0 106 9 13 6 1 0 207 1 0 145 0 1 60 0 1 159 0 1 243 0 2 19 0 4 92 10 7 43 0 1 42 5 6 108 0 1 121 0 12 26 1 0 4 0 1 5 0 2 108 0 3 99 10 12 440 1 0 205 0 4 21 1 0 7 1 0 29 1 0 41 4 2 106 3 1 15 1 0 14 10 4 11 2 0 19 2 1 4 1 0 3 3 0 20 1 0 11 2 1 10 2 0 3 1 0 7 7 5 19 1 0 42 chain 12285 chr18 80373285 + 45811317 45811454 L1PA4 6152 + 3543 3680 66307 137 chain 135204 chr18 80373285 + 45811461 45812967 L1PA4 6152 + 3683 5188 13521 982 1 0 523 chain 125801 chr18 80373285 + 45815425 45817254 L1PB1 5432 + 3598 5420 14586 14 0 2 91 16 16 199 6 8 523 0 4 30 6 11 44 1 3 85 3 0 75 0 2 66 0 1 4 4 3 15 0 8 72 0 4 225 12 12 19 2 0 12 1 0 12 5 1 10 3 1 49 3 2 15 1 0 31 98 79 24 1 0 21 1 0 13 1 0 16 chain 21296 chr18 80373285 + 45921713 45921971 L1PA6 6164 + 5906 6162 54772 247 2 0 9 chain 26915 chr18 80373285 + 45950254 45950621 THE1A 353 + 0 353 46388 58 22 9 44 1 0 242 chain 45812 chr18 80373285 + 45980213 45980806 LTR71B 605 + 0 605 31158 133 13 19 139 0 4 58 1 2 79 0 1 170 chain 24351 chr18 80373285 + 45989199 45989546 THE1A 353 + 8 353 50245 5 2 0 51 1 2 28 1 0 17 0 2 6 17 15 219 chain 135188 chr18 80373285 + 46044156 46045664 L1PA3long 6157 + 4642 6150 13526 153 1 3 869 2 0 483 chain 3763 chr18 80373285 + 46073043 46073088 MADE1 96 + 1 46 93116 45 chain 14064 chr18 80373285 + 46078949 46079108 L1PA2 6032 + 5873 6032 63496 159 chain 23298 chr18 80373285 + 46146187 46146467 AluSp 311 + 6 285 51932 119 1 0 160 chain 7008 chr18 80373285 + 46146487 46146588 L1MA3 4352 + 4205 4302 77574 53 2 0 24 1 0 6 1 0 14 chain 61098 chr18 80373285 + 46164731 46165476 LTR17 781 + 0 774 26083 282 0 1 24 0 2 18 1 0 101 2 3 189 0 4 91 5 27 32 chain 24976 chr18 80373285 + 46432675 46432947 AluYc 301 + 0 274 49320 120 0 2 152 chain 10447 chr18 80373285 + 46440280 46440448 MER44A 345 + 102 268 69529 32 1 0 4 0 1 47 3 6 38 15 10 28 chain 7181 chr18 80373285 + 46451412 46451512 L1MC2 1988 + 1417 1514 77002 34 3 0 63 chain 3172 chr18 80373285 + 46517406 46517446 MIR 256 + 107 148 98182 14 0 1 26 chain 28737 chr18 80373285 + 46589054 46589455 LTR3B 427 + 0 418 43731 289 37 46 32 0 7 12 4 5 27 chain 27280 chr18 80373285 + 46610220 46610535 L1PA6 6164 + 5825 6141 45852 283 0 1 32 chain 66663 chr18 80373285 + 46613956 46614717 L1PA5 6144 + 5371 6132 24782 761 chain 2947 chr18 80373285 + 46645988 46646024 LTR85a 401 + 169 205 100429 36 chain 6684 chr18 80373285 + 46701435 46701619 MLT1B 390 + 83 266 78687 70 89 88 25 chain 11599 chr18 80373285 + 46731005 46731233 MER67C 710 + 391 629 67573 69 67 77 92 chain 39226 chr18 80373285 + 46734863 46735388 MLT2A2 560 + 0 560 35195 187 0 23 33 1 2 66 1 0 8 0 1 79 3 14 86 1 0 6 0 1 54 chain 487764 chr18 80373285 + 46742619 46748221 L1PA6 6164 + 527 6154 3475 260 0 17 99 0 4 93 1 6 264 1 0 512 0 1 546 1 2 858 0 1 80 2 1 425 1 2 818 1 0 197 2 1 1429 2 1 10 chain 32017 chr18 80373285 + 46777527 46777984 MLT2A1 477 + 0 477 40335 138 0 1 5 0 1 24 1 5 149 1 0 62 34 49 43 chain 330516 chr18 80373285 + 46777984 46782313 HERVL-int 5654 + 0 5644 6207 73 1 0 98 1 0 359 320 0 299 16 1521 207 0 1 397 0 2 74 4 66 398 0 1 125 0 2 343 0 2 20 4 16 79 1 0 813 3 0 6 0 3 74 0 4 5 0 2 157 0 26 108 0 1 8 0 3 127 0 12 15 1 2 135 1 3 57 chain 29667 chr18 80373285 + 46782338 46782756 MLT2A1 477 + 19 477 42412 119 0 1 27 4 8 15 0 1 4 13 12 117 1 0 61 4 36 47 0 4 6 chain 30236 chr18 80373285 + 46789141 46789546 MER51B 395 + 0 395 41818 42 13 0 203 1 0 84 1 5 61 chain 29369 chr18 80373285 + 46802761 46803073 AluYa5 310 + 0 310 42788 97 2 0 213 chain 25516 chr18 80373285 + 46809472 46809774 AluSp 311 + 0 301 48459 28 1 0 273 chain 37590 chr18 80373285 + 46868200 46868774 LTR10B1 532 + 8 532 36342 166 8 0 16 32 0 41 4 2 165 1 0 86 31 24 24 chain 13415 chr18 80373285 + 46877010 46877281 HERVI-int 3819 + 3555 3819 64447 112 14 12 35 15 14 20 34 32 30 2 0 9 chain 39199 chr18 80373285 + 46877310 46877872 LTR10B1 532 + 12 532 35215 160 12 4 14 32 0 41 6 4 297 chain 41366 chr18 80373285 + 46943260 46943772 MER41A 554 + 0 530 33753 6 0 2 133 3 5 226 0 1 54 0 8 33 0 5 57 chain 5723 chr18 80373285 + 46945102 46945232 LTR37B 484 + 338 471 82247 15 1 0 53 43 47 18 chain 8298 chr18 80373285 + 47044361 47044473 L1MB3 1562 + 1444 1555 74163 79 1 0 32 chain 9718 chr18 80373285 + 47093994 47094353 MLT1A1 405 + 39 405 71010 4 1 0 25 164 174 27 1 0 38 28 29 45 1 0 6 4 3 15 chain 3340 chr18 80373285 + 47142370 47142408 MER58D 378 + 338 376 96685 38 chain 129029 chr18 80373285 + 47181565 47183136 THE1A-int 1579 + 0 1574 14145 407 18 18 455 0 3 691 chain 27676 chr18 80373285 + 47183141 47183495 THE1A 353 + 0 353 45360 110 1 0 92 1 0 92 0 1 58 chain 14010 chr18 80373285 + 47276712 47276865 LTR7B 505 + 0 153 63579 153 chain 4158 chr18 80373285 + 47315025 47315077 MLT1B 390 + 321 373 90407 52 chain 119347 chr18 80373285 + 47445860 47447438 THE1B-int 1605 + 0 1605 15639 427 1 26 119 4 8 81 51 51 563 1 0 56 1 2 44 6 5 59 1 0 164 chain 45816 chr18 80373285 + 47455739 47456339 LTR71B 605 + 0 605 31155 135 15 12 5 2 0 233 1 11 209 chain 5220 chr18 80373285 + 47522611 47522678 MER39 703 + 519 586 84584 67 chain 21936 chr18 80373285 + 47589778 47590065 AluSc 308 + 7 292 53922 45 7 5 148 0 3 5 3 0 79 chain 558322 chr18 80373285 + 47637329 47643476 L1PA3long 6157 + 6 6157 232 311 5 4 1392 0 1 107 0 2 212 1 0 2375 0 1 86 0 1 1642 0 3 9 2 0 5 chain 564675 chr18 80373285 + 47660373 47666403 L1HS 6032 + 3 6032 101 6024 1 0 5 chain 29284 chr18 80373285 + 47705887 47706212 L1PA2 6032 + 5703 6032 42919 174 0 4 151 chain 6857 chr18 80373285 + 47734008 47734103 MLT2B1 522 + 352 446 78119 75 3 2 17 chain 50034 chr18 80373285 + 47764001 47764856 L1PA16 3655 + 2778 3619 29553 58 2 0 37 12 16 9 1 0 24 1 0 53 5 7 137 7 15 60 15 14 75 20 18 93 1 2 20 8 5 74 6 13 68 4 1 12 25 7 7 5 0 16 chain 130510 chr18 80373285 + 47827452 47828948 SVA_B 1603 + 9 1603 13978 11 23 0 16 1 8 512 0 40 37 0 40 169 0 36 98 1 0 33 1 0 594 chain 3122 chr18 80373285 + 47872864 47872919 MER2 342 + 203 260 98617 11 6 8 38 chain 4801 chr18 80373285 + 47885993 47886048 MER2B 336 + 214 269 86694 55 chain 4387 chr18 80373285 + 47906196 47906342 Tigger4a 237 + 162 233 88963 14 82 7 50 chain 86898 chr18 80373285 + 47960299 47961676 MER11B 1079 + 0 1064 20250 116 307 0 291 4 5 353 2 4 107 0 1 153 0 1 24 11 0 9 chain 19540 chr18 80373285 + 47999309 47999680 THE1B 368 + 0 368 56971 47 0 1 63 0 3 6 2 0 47 90 86 52 8 7 56 chain 3890 chr18 80373285 + 48010725 48010768 MER53 195 - 128 171 92216 43 chain 12394 chr18 80373285 + 48042126 48042335 MER107 203 + 1 202 66147 14 0 1 20 8 10 71 5 1 40 0 6 6 5 1 8 9 0 23 chain 8293 chr18 80373285 + 48049009 48049105 MER85 139 + 0 96 74178 96 chain 22533 chr18 80373285 + 48067729 48067995 AluSp 311 + 10 276 53064 266 chain 3197 chr18 80373285 + 48092354 48092390 Tigger13a 716 + 196 232 97926 36 chain 24697 chr18 80373285 + 48195254 48195619 THE1B 368 + 0 368 49741 113 0 1 55 1 0 21 3 5 4 0 1 14 0 4 12 1 0 12 1 0 64 18 16 46 chain 126867 chr18 80373285 + 48243371 48245441 L1PB1 5432 + 3664 5404 14430 68 1 0 153 1 0 83 0 1 491 266 0 167 6 3 75 1 4 25 0 1 62 2 1 46 0 1 34 7 1 210 19 9 15 21 0 24 1 0 5 2 1 14 5 1 9 4 2 50 2 1 15 1 0 45 1 0 30 9 0 15 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 chain 42526 chr18 80373285 + 48277010 48277464 L1PA2 6032 + 4882 5336 33047 454 chain 118412 chr18 80373285 + 48281173 48282471 L1PA3long 6157 + 4859 6157 15819 1298 chain 38949 chr18 80373285 + 48322532 48323182 L1PB1 5432 + 4746 5427 35392 9 0 56 291 1 0 15 3 0 21 1 0 8 1 0 12 5 1 8 2 0 53 2 1 9 15 14 37 1 0 15 2 0 6 1 0 11 7 0 14 2 0 5 1 0 14 3 8 16 1 0 18 9 8 5 0 2 19 2 0 5 chain 11802 chr18 80373285 + 48358389 48358600 MSTB 430 + 213 430 67205 31 1 0 63 48 55 68 chain 6422 chr18 80373285 + 48384981 48385059 MER30 238 + 156 237 79598 40 0 3 38 chain 4438 chr18 80373285 + 48400690 48400742 MER33 330 + 165 217 88674 52 chain 5634 chr18 80373285 + 48432268 48432339 MLT1A1 405 + 6 78 82642 30 0 1 41 chain 90101 chr18 80373285 + 48433845 48434926 L1PA7 6471 + 5379 6467 19663 235 0 3 83 0 2 270 1 2 484 0 1 8 chain 3425 chr18 80373285 + 48438704 48438791 MER21C 908 + 72 119 95858 19 40 0 28 chain 4955 chr18 80373285 + 48464289 48464439 MLT1J2 417 + 135 298 85871 34 74 87 42 chain 4145 chr18 80373285 + 48473905 48473956 MLT1A-int 1186 + 622 673 90491 51 chain 17382 chr18 80373285 + 48512510 48512850 L1PB1 5432 + 5103 5413 59379 11 1 0 12 0 1 11 1 0 9 27 20 53 3 2 15 1 0 43 1 0 16 4 1 16 8 0 14 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 9 chain 62029 chr18 80373285 + 48523289 48524038 L1PA8 5853 + 5108 5853 25863 67 0 1 346 0 1 22 0 1 16 1 0 46 2 0 74 1 0 5 2 1 52 2 1 19 1 0 93 chain 518185 chr18 80373285 + 48648985 48655129 L1PA6 6164 + 0 6159 2358 309 14 17 84 1 2 44 10 9 874 0 1 197 9 14 215 1 0 4 1 2 88 20 0 472 1 2 107 28 31 13 13 39 541 18 1 123 0 1 425 0 4 83 0 2 657 0 4 950 0 3 684 0 1 151 2 0 5 chain 11234 chr18 80373285 + 48673716 48673910 MER30 238 + 0 238 68197 15 0 18 66 2 0 5 4 23 26 1 7 29 10 13 36 chain 15242 chr18 80373285 + 48700033 48700354 THE1B 368 + 0 337 61990 28 79 90 51 1 0 29 8 16 18 10 8 97 chain 120417 chr18 80373285 + 49146206 49147551 L1PA4 6152 + 4000 5349 15458 1303 1 5 41 chain 10679 chr18 80373285 + 49158730 49158998 L1MA3 4352 + 4058 4314 69076 34 55 36 15 3 0 92 4 0 7 38 52 20 chain 159483 chr18 80373285 + 49197599 49199376 L1PA5 6144 + 4351 6132 11782 946 0 4 831 chain 137257 chr18 80373285 + 49202312 49203869 SVA_F 1814 + 291 1811 13321 546 6 6 36 1 0 53 0 1 14 1 15 51 49 0 157 1 0 17 2 0 218 0 1 405 chain 3365 chr18 80373285 + 49203020 49203069 SVA_F 1814 + 1140 1189 60935 49 chain 557370 chr18 80373285 + 49215768 49221916 L1PA3long 6157 + 6 6157 277 4151 0 3 1997 chain 72650 chr18 80373285 + 49244921 49245975 MER11A 1151 + 0 1151 23388 79 13 21 100 1 0 80 17 14 36 1 3 136 5 21 42 0 12 128 16 19 11 4 5 28 8 12 67 0 1 19 0 57 113 8 7 74 1 0 24 1 0 42 chain 32079 chr18 80373285 + 49313021 49313789 MER41A 554 + 15 554 40288 162 355 123 20 0 3 231 chain 82764 chr18 80373285 + 49328450 49329440 L1PA6 6164 + 5171 6161 21072 144 2 0 55 0 3 348 1 0 295 3 2 123 0 3 10 2 0 7 chain 41946 chr18 80373285 + 49375656 49376198 MLT2A2 560 + 0 560 33391 372 0 3 26 1 12 137 0 4 6 chain 447022 chr18 80373285 + 49420540 49425736 L1PA5 6144 + 0 5324 4432 151 53 61 273 4 18 464 0 1 201 9 0 738 1 110 553 0 3 603 1 0 26 1 0 831 0 1 157 5 9 1101 1 0 23 chain 127693 chr18 80373285 + 49450179 49452044 HUERS-P3b-int 2065 + 13 1941 14329 81 4 0 35 0 2 15 43 45 125 75 0 102 1 0 127 1 25 35 0 4 78 4 0 7 1 0 80 0 2 52 1 0 27 1 0 151 0 13 166 3 4 31 0 1 149 0 1 100 1 0 44 25 2 17 0 1 66 2 0 17 1 0 20 1 0 79 0 131 36 4 0 57 chain 76821 chr18 80373285 + 49452645 49453642 LTR12C 1709 + 471 1709 22371 181 0 119 66 1 0 46 1 0 203 26 32 85 0 1 4 3 20 211 0 101 87 1 0 82 chain 8370 chr18 80373285 + 49466779 49466889 MLT1A0 366 + 171 306 73973 31 0 25 79 chain 11511 chr18 80373285 + 49508725 49508984 L1MA5A 2387 + 2159 2375 67729 27 0 1 28 3 0 15 22 0 50 52 37 15 1 0 8 1 0 22 2 0 13 chain 7883 chr18 80373285 + 49528827 49529011 MER4B 649 + 0 214 75171 25 18 17 4 0 1 65 1 0 4 42 73 25 chain 4917 chr18 80373285 + 49692484 49692562 MER58A 224 + 49 147 86071 34 9 29 35 chain 4144 chr18 80373285 + 49709092 49709301 L1PA16 3655 + 3290 3501 58151 75 1 0 18 1 3 23 2 3 89 chain 52744 chr18 80373285 + 49709301 49709954 PABL_A 660 + 0 660 28656 227 1 0 113 2 1 153 0 10 75 1 0 81 chain 1210 chr18 80373285 + 49709962 49710023 L1PA16 3655 + 3505 3566 58151 61 chain 280708 chr18 80373285 + 49717972 49721107 L1PA4 6152 + 3036 6152 7403 129 1 0 1966 10 0 46 4 1 720 1 0 248 4 0 6 chain 3949 chr18 80373285 + 49735273 49735323 MER103C 291 + 141 191 91769 50 chain 141292 chr18 80373285 + 49799209 49800908 SVA_D 2077 + 24 2077 13001 14 10 7 8 0 8 592 0 37 120 37 0 110 1 38 28 0 2 14 2 54 30 0 1 50 6 264 27 4 0 431 1 0 151 4 8 59 chain 26289 chr18 80373285 + 49809479 49810034 L1MC2 1988 + 1432 1987 47285 101 0 5 80 0 1 52 95 102 22 50 46 6 1 0 70 36 29 23 1 0 18 chain 7683 chr18 80373285 + 49820998 49821097 MER6A 605 + 362 465 75668 37 0 4 62 chain 31270 chr18 80373285 + 49880774 49881170 LTR3 431 + 24 422 40920 25 0 1 294 1 2 76 chain 42620 chr18 80373285 + 49927157 49929106 L1PB1 5432 + 3752 5422 32989 210 7 5 6 0 1 44 1189 937 111 9 12 25 16 17 18 1 0 4 3 2 14 5 1 9 6 4 41 13 12 11 1 0 45 1 0 15 1 0 4 2 0 8 7 0 16 11 8 14 2 0 24 1 0 22 1 0 12 1 0 14 1 0 4 chain 146105 chr18 80373285 + 49941678 49943364 L1PA4 6152 + 4490 6152 12604 315 15 6 320 10 0 46 18 1 634 1 0 299 0 8 22 0 5 6 chain 8903 chr18 80373285 + 49969517 49969639 MER51B 395 + 257 395 72779 39 1 13 22 0 4 60 chain 18634 chr18 80373285 + 49991609 49991823 L1PA7 6471 + 6245 6459 57959 214 chain 15353 chr18 80373285 + 50043698 50044031 L1PB1 5432 + 5107 5427 61846 8 3 0 6 1 0 17 1 0 6 0 3 9 9 5 7 2 0 8 4 15 29 2 1 16 4 3 40 1 0 16 2 0 6 7 6 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 65091 chr18 80373285 + 50051995 50052707 L1PA3long 6157 + 5437 6149 25167 712 chain 109714 chr18 80373285 + 50084587 50085802 L1PA4 6152 + 4663 5878 17102 1215 chain 54813 chr18 80373285 + 50101461 50102334 L1PA8A 6298 + 5393 6281 27943 76 0 4 16 41 43 19 2 0 20 0 3 18 8 11 146 0 4 120 0 2 81 3 4 4 1 0 61 36 19 123 35 52 28 4 3 31 chain 25085 chr18 80373285 + 50125226 50125521 L1PA5 6144 + 5838 6134 49142 78 0 1 217 chain 265635 chr18 80373285 + 50147918 50150843 L1PA3long 6157 + 3228 6157 7809 716 0 1 1179 1 4 1029 chain 25341 chr18 80373285 + 50156281 50156655 THE1C 375 + 0 375 48727 87 7 8 11 29 33 168 3 0 43 1 0 25 chain 6086 chr18 80373285 + 50208830 50208907 MER96B 391 - 212 289 80780 77 chain 33997 chr18 80373285 + 50239948 50240534 LTR10F 562 + 0 424 38707 229 139 2 35 25 0 158 chain 9062 chr18 80373285 + 50240177 50240316 LTR10F 562 + 117 228 71167 70 28 0 41 chain 82738 chr18 80373285 + 50257238 50258748 L1MA1 4479 + 3010 4151 21077 163 4 0 77 2 1 12 5 0 34 0 4 88 3 0 129 345 0 197 1 0 24 2 0 16 1 0 71 1 0 8 1 2 10 2 0 13 1 0 58 0 1 15 1 0 14 12 8 123 1 0 27 2 0 37 1 0 9 chain 5197 chr18 80373285 + 50292048 50292115 MER44D 709 + 86 153 84691 67 chain 28122 chr18 80373285 + 50373185 50373577 LTR7 482 + 0 474 44679 101 15 14 17 0 51 41 5 37 46 0 1 139 1 0 27 chain 45092 chr18 80373285 + 50373954 50374589 PABL_B 668 + 1 668 31529 63 1 9 164 1 0 24 1 0 87 4 3 34 27 33 168 0 2 20 0 19 41 chain 20789 chr18 80373285 + 50384649 50384869 L1HS 6032 + 5812 6032 55377 220 chain 48159 chr18 80373285 + 50397982 50398672 LTR30 714 + 2 704 30235 247 0 5 35 7 1 149 7 22 50 1 2 83 0 2 26 4 1 6 0 2 3 5 0 10 19 21 25 1 0 12 chain 64292 chr18 80373285 + 50405361 50407623 HERVS71-int 4705 + 2447 4419 25352 13 32 20 9 1 0 5 1 0 12 1 0 10 4 1 39 1 0 13 1 0 41 1 0 20 2 1 39 20 16 11 1 0 21 23 17 11 1 0 15 2 0 9 1 0 13 64 49 12 2 0 30 8 6 32 3 0 8 1 0 9 1 0 13 81 7 21 1 0 20 1 0 3 1 0 8 1 0 16 139 102 6 0 4 20 67 138 12 33 25 24 21 17 11 8 12 6 1 0 18 3 1 57 25 20 6 1 0 29 1 0 32 6 3 53 9 7 11 1 0 35 1 0 12 2 0 10 1 0 11 1 0 4 4 2 5 2 0 5 1 0 29 1 0 4 2 1 6 2 0 4 1 0 21 17 13 19 1 0 7 6 4 33 4 1 22 1 0 5 0 1 12 2 0 6 1 0 25 2 0 14 1 0 23 5 0 3 24 0 34 2 1 11 4 2 13 24 19 24 0 2 19 1 0 8 1 0 8 2 1 10 6 4 17 2 0 9 2 0 21 301 212 21 2 1 14 chain 12185 chr18 80373285 + 50422030 50422208 MER2 342 + 149 317 66498 83 9 0 58 1 0 27 chain 161716 chr18 80373285 + 50435255 50437248 L1PA7 6471 + 0 6465 11629 54 1 0 121 0 4375 118 0 4 187 1 69 488 1 0 104 0 1 99 0 5 73 0 2 54 0 1 129 0 1 490 4 23 61 2 0 6 chain 21599 chr18 80373285 + 50440325 50440680 THE1D 372 + 0 372 54357 55 0 1 79 7 11 16 0 1 17 33 29 14 18 25 33 0 8 83 chain 4979 chr18 80373285 + 50444173 50444236 MLT1F 544 + 465 528 85758 63 chain 38589 chr18 80373285 + 50452661 50453246 Tigger3b 1229 + 598 1199 35649 56 0 4 7 11 17 14 12 13 39 6 15 176 12 20 7 12 0 233 chain 13850 chr18 80373285 + 50485611 50485833 MER30 238 + 0 236 63797 107 13 0 7 14 44 32 3 0 46 chain 32394 chr18 80373285 + 50487700 50488252 MER57-int 2662 + 2148 2659 40045 184 2 0 65 5 0 10 33 33 64 36 21 18 2 0 6 2 1 6 3 0 27 1 0 9 5 0 33 7 0 34 chain 31224 chr18 80373285 + 50488257 50488651 MER57A1 433 + 0 397 40950 152 0 1 126 0 2 116 chain 42646 chr18 80373285 + 50488742 50489288 MLT2A2 560 + 0 556 32973 393 2 1 8 0 11 143 chain 10728 chr18 80373285 + 50510633 50510956 L1PB1 5432 + 5117 5422 68996 21 1 0 6 1 0 13 27 21 38 10 9 11 1 0 43 2 1 16 1 0 6 17 6 18 54 61 4 1 0 13 2 1 17 chain 24501 chr18 80373285 + 50517279 50517671 THE1D 372 + 0 371 50021 47 39 0 12 6 16 124 4 6 33 7 13 120 chain 63550 chr18 80373285 + 50543681 50544541 MER41-int 2638 + 1726 2590 25514 28 9 0 6 0 9 82 2 0 5 4 7 229 1 0 47 1 3 209 8 7 86 10 11 12 0 1 86 0 1 35 chain 40628 chr18 80373285 + 50544578 50545122 MER41B 635 + 0 548 34201 107 21 22 297 0 3 32 14 13 37 0 1 36 chain 10030 chr18 80373285 + 50551983 50552117 Tigger2a 444 + 217 353 70358 11 0 3 4 1 0 118 chain 16168 chr18 80373285 + 50569551 50569746 MER107 203 + 3 203 60791 158 0 5 37 chain 15789 chr18 80373285 + 50688588 50688884 L1PB1 5432 + 5159 5427 61299 9 2 0 52 2 1 16 1 0 44 40 27 19 2 0 5 1 0 14 2 0 26 1 0 19 1 0 13 1 0 11 1 0 7 2 0 5 chain 6233 chr18 80373285 + 50739690 50739770 MIR 256 + 67 147 80226 80 chain 236371 chr18 80373285 + 50776702 50779897 MER61-int 3695 + 30 3247 8560 16 1 0 50 20 19 157 1 0 43 0 1 83 0 3 5 28 10 19 46 29 10 0 1 75 0 1 90 2 0 77 0 63 369 1 0 94 0 1 65 0 2 47 0 3 165 20 22 467 7 8 113 6 0 15 33 24 205 0 3 14 0 6 10 0 1 197 2 0 84 4 7 5 3 0 56 1 0 82 5 0 16 1 0 36 2 1 251 1 0 11 0 1 84 chain 5305 chr18 80373285 + 50834827 50834923 LTR56 451 + 25 112 84170 7 0 1 4 1 0 54 16 7 14 chain 6860 chr18 80373285 + 50915118 50915209 Tigger2b_Pri 1066 + 828 920 78106 85 0 1 6 chain 6159 chr18 80373285 + 50963244 50963324 L1M1 2793 + 1844 1924 80497 80 chain 184153 chr18 80373285 + 51001573 51003646 L1PA5 6144 + 4013 6087 10379 380 0 1 45 0 1 854 1 0 793 chain 3995 chr18 80373285 + 51128682 51128791 L1MD1 2063 + 1824 1907 91478 23 46 20 40 chain 11369 chr18 80373285 + 51221072 51221321 L1PB1 5432 + 5194 5420 67972 23 7 6 13 1 0 44 1 0 14 31 18 14 8 6 14 2 0 24 1 0 21 1 0 9 8 7 13 chain 8992 chr18 80373285 + 51246199 51246399 MSTC 436 + 0 215 72572 39 34 24 32 0 33 13 16 0 8 8 16 50 chain 26682 chr18 80373285 + 51271222 51271703 L1MA1 4479 + 3726 4190 46711 12 2 0 17 9 7 26 5 4 23 0 4 7 1 0 19 2 0 14 1 0 23 0 5 25 0 1 20 1 0 9 3 2 8 4 1 125 1 0 28 3 1 35 1 0 9 1 0 4 8 6 11 6 0 18 chain 52336 chr18 80373285 + 51311011 51311858 L1MA3 4352 + 3518 4352 28780 14 0 21 7 24 16 132 1 2 194 0 1 187 33 14 7 3 0 91 1 7 21 4 0 28 2 0 22 2 1 5 1 0 21 6 5 8 1 0 6 11 9 15 chain 10788 chr18 80373285 + 51375821 51375944 L1MA2 4263 + 1045 1168 68883 123 chain 30278 chr18 80373285 + 51534137 51534533 MLT2A1 477 + 0 397 41783 140 0 1 27 1 5 212 4 0 12 chain 197834 chr18 80373285 + 51633717 51636310 MER4-int 2692 + 121 2692 9782 223 1 0 308 0 1 31 0 2 233 0 1 177 14 0 410 10 5 145 0 1 205 1 2 140 1 0 93 0 4 14 0 2 5 1 0 14 0 1 23 0 1 119 21 6 76 1 2 43 1 0 270 1 2 12 chain 33230 chr18 80373285 + 51636318 51636764 MER4A1 472 + 0 460 39321 224 0 21 22 7 8 121 17 9 55 chain 9664 chr18 80373285 + 51644870 51645108 MER2 342 + 54 320 71130 22 1 0 4 56 75 31 1 24 84 24 11 15 chain 42122 chr18 80373285 + 51695935 51696486 MLT2A2 560 + 0 560 33285 195 0 3 5 0 1 107 0 1 117 8 9 34 4 3 75 0 4 6 chain 147655 chr18 80373285 + 51697447 51699891 HERVH48-int 3304 + 196 3031 12507 30 1 0 29 67 48 59 4 0 7 1 0 72 1 0 15 6 0 8 11 5 81 1 0 8 3 2 64 74 5 18 4 0 16 1 0 4 3 1 65 2 0 38 5 4 28 14 602 165 1 0 89 2 1 270 2 0 18 1 0 264 5 3 67 1 0 11 2 1 47 1 0 134 0 1 64 0 1 29 1 0 4 1 0 18 2 1 44 3 1 9 6 5 29 2 0 18 2 0 7 2 0 11 139 103 22 3 0 7 2 0 7 2 0 25 13 5 9 1 0 23 2 0 5 1 0 45 1 0 3 2 0 60 chain 5745 chr18 80373285 + 51706819 51706885 HERVH48-int 3304 + 3086 3152 82156 66 chain 555625 chr18 80373285 + 51740631 51746665 L1PA2 6032 + 2 6030 376 480 2 1 1364 7 4 2211 2 0 1968 chain 26510 chr18 80373285 + 51782938 51783230 L1PA3long 6157 + 5865 6157 46970 292 chain 242282 chr18 80373285 + 51828766 51831433 L1PA4 6152 + 3209 5880 8418 1142 0 4 1525 chain 17826 chr18 80373285 + 51832303 51832489 AluYa5 310 + 124 310 58853 186 chain 84412 chr18 80373285 + 51876362 51877337 L1PA5 6144 + 5174 6144 20731 120 2 0 41 1 0 552 1 0 198 1 0 59 chain 109672 chr18 80373285 + 51929201 51930763 THE1B-int 1605 + 0 1586 17105 12 3 5 98 52 0 159 0 6 115 0 64 222 0 1 13 51 62 97 1 2 137 0 1 173 4 5 5 9 0 80 2 0 6 0 2 134 1 0 104 1 0 83 chain 38745 chr18 80373285 + 51975296 51976011 L1PB1 5432 + 4745 5424 35533 50 8 0 8 1 9 185 1 0 85 37 35 17 1 0 7 4 3 12 2 0 3 2 0 9 2 0 38 3 2 11 1 0 17 1 0 43 2 1 16 1 0 4 2 0 8 9 0 19 2 0 5 1 0 16 2 0 11 0 8 8 16 7 9 1 0 13 1 0 14 1 0 6 chain 63260 chr18 80373285 + 52094534 52095344 L1PA7 6471 + 5624 6458 25570 38 0 20 16 0 2 613 0 1 14 0 1 129 chain 26751 chr18 80373285 + 52143926 52144279 THE1B 368 + 0 368 46611 44 5 20 108 2 1 25 0 2 94 1 0 74 chain 22501 chr18 80373285 + 52144885 52145147 L1P1 4361 + 2643 2904 53117 149 5 4 108 chain 21856 chr18 80373285 + 52255193 52255593 THE1C 375 + 0 375 54032 54 44 16 15 0 1 23 24 25 45 0 2 13 18 12 34 0 1 5 1 0 28 0 5 96 chain 50997 chr18 80373285 + 52266071 52266917 L1PB1 5432 + 4605 5420 29216 23 3 0 50 1 2 28 0 1 98 8 9 179 1 2 5 1 0 101 1 0 14 0 1 16 1 0 13 1 0 9 18 12 52 2 1 15 2 1 44 1 0 15 3 0 8 13 4 19 24 19 24 1 0 21 1 0 13 1 0 16 chain 28031 chr18 80373285 + 52305975 52306407 MLT2A1 477 + 0 477 44814 60 0 1 82 0 1 16 12 16 11 0 1 54 1 2 80 3 2 28 38 78 5 2 0 40 chain 37872 chr18 80373285 + 52307057 52307485 L1PA5 6144 + 5712 6141 36161 219 0 1 209 chain 3204 chr18 80373285 + 52389206 52389248 MER20 218 + 41 84 97863 36 0 1 6 chain 4485 chr18 80373285 + 52398875 52398932 L1PB1 5432 + 5349 5404 88419 21 1 0 21 1 0 13 chain 58111 chr18 80373285 + 52400408 52401105 L1PA7 6471 + 5774 6461 26931 362 0 1 255 17 6 63 chain 88952 chr18 80373285 + 52405514 52406481 L1PA2 6032 + 4210 5177 19866 967 chain 30233 chr18 80373285 + 52566162 52566526 L1PA7 6471 + 6107 6468 41820 185 1 0 5 2 0 171 chain 127779 chr18 80373285 + 52961694 52963111 L1PA3long 6157 + 4732 6157 14309 578 0 4 788 0 4 51 chain 65686 chr18 80373285 + 53012784 53013701 L1PA8 5853 + 4901 5847 25034 105 2 5 54 5 7 86 0 1 174 0 17 15 2 9 143 0 3 42 1 0 43 5 3 48 1 5 16 14 11 52 2 1 19 1 0 87 chain 70552 chr18 80373285 + 53042575 53043465 L1PA7 6471 + 5572 6465 23856 51 5 9 308 8 0 296 1 5 178 0 3 43 chain 13288 chr18 80373285 + 53088565 53088721 L1P1 4361 + 3131 3288 64643 47 0 1 109 chain 18223 chr18 80373285 + 53104229 53104523 THE1B 368 + 0 299 58437 17 2 0 16 13 28 18 18 12 16 0 1 64 2 1 27 2 0 99 chain 80220 chr18 80373285 + 53110541 53111409 L1PA3long 6157 + 5289 6157 21583 868 chain 5714 chr18 80373285 + 53157965 53158094 L1MA3 4352 + 4201 4325 82278 26 10 10 20 3 1 24 1 0 6 1 0 17 10 9 11 chain 63264 chr18 80373285 + 53167960 53168728 L1PA7 6471 + 5710 6468 25569 20 0 1 17 14 9 380 1 0 177 6 1 153 chain 352202 chr18 80373285 + 53173506 53177343 L1PA2 6032 + 2192 6032 5891 874 0 4 2812 1 0 150 chain 24125 chr18 80373285 + 53238925 53239195 L1PA5 6144 + 5865 6135 50613 270 chain 59657 chr18 80373285 + 53318780 53319511 L1PA7 6471 + 1973 2699 26472 660 5 0 66 chain 29322 chr18 80373285 + 53399622 53399933 AluYa5 310 + 0 310 42844 132 1 0 178 chain 33616 chr18 80373285 + 53462224 53462709 MER1A 529 + 42 521 38989 401 60 54 24 chain 71980 chr18 80373285 + 53495897 53496864 L1P3 4156 + 738 1684 23544 239 17 15 47 14 21 153 4 0 93 4 0 88 0 3 145 21 0 142 chain 533233 chr18 80373285 + 53511454 53517443 L1PA3long 6157 + 6 6142 1697 146 0 1 241 5 0 179 0 4 130 0 1 69 1 129 1046 1 0 107 5 4 284 0 1 361 0 5 72 3 10 339 0 5 31 2 0 775 0 1 1357 1 4 834 chain 124765 chr18 80373285 + 53522393 53523912 L1PA7 6471 + 4934 6469 14738 262 5 8 77 0 1 330 3 0 6 3 5 77 0 2 257 3 9 329 1 2 48 0 4 118 chain 4308 chr18 80373285 + 53524004 53524151 L1MA8 2339 + 2122 2263 89453 35 2 3 27 64 58 11 1 0 7 chain 28462 chr18 80373285 + 53536205 53536509 AluYa5 310 + 0 303 44179 97 1 0 206 chain 33360 chr18 80373285 + 53586100 53586697 L1MA3 4352 + 3764 4332 39207 326 106 84 62 1 0 18 8 6 22 1 0 6 1 0 21 6 5 14 1 0 4 chain 3143 chr18 80373285 + 53597484 53597522 MER5A1 166 + 98 135 98442 27 1 0 10 chain 249013 chr18 80373285 + 53632127 53635137 L1PA6 6164 + 2812 5842 8265 45 0 2 281 0 1 293 0 1 71 1 5 829 0 1 125 0 3 180 1 0 337 0 2 5 1 0 4 1 0 194 0 1 123 0 3 86 3 6 245 0 2 185 chain 24165 chr18 80373285 + 53635731 53636033 MER4E1 777 + 453 758 50554 85 10 13 207 chain 270223 chr18 80373285 + 53640454 53643788 L1PA7 6471 + 3145 6467 7702 381 1 2 392 1 0 74 27 12 517 0 4 54 0 1 309 4 10 346 3 7 364 7 10 97 15 0 181 1 0 139 0 1 394 2 3 15 1 0 9 chain 37368 chr18 80373285 + 53656627 53657069 L1PA5 6144 + 5719 6144 36506 357 18 1 67 chain 5199 chr18 80373285 + 53662097 53662153 THE1D 372 + 0 56 84679 56 chain 31240 chr18 80373285 + 53667262 53667604 L1PA3long 6157 + 5805 6147 40939 342 chain 44689 chr18 80373285 + 53671634 53672143 MER9a1 513 + 0 513 31746 490 5 9 14 chain 22270 chr18 80373285 + 53699370 53699659 L1PA8 5853 + 5564 5848 53448 45 2 0 70 1 0 61 2 1 19 1 0 88 chain 46836 chr18 80373285 + 53737406 53738017 PRIMA4_LTR 623 + 13 623 30717 121 3 0 8 0 3 43 4 0 73 1 0 7 1 4 38 0 1 21 2 1 58 0 1 231 chain 10311 chr18 80373285 + 53741957 53742116 MER30 238 + 25 199 69782 83 4 0 6 11 30 55 chain 7003 chr18 80373285 + 53768723 53768900 L1PA13 3608 + 3361 3522 77590 35 13 11 37 2 0 4 2 0 20 1 0 7 37 29 14 1 0 4 chain 446650 chr18 80373285 + 53804580 53810332 L1PA8 5853 + 108 5834 4444 138 1 0 56 12 0 48 0 1 73 0 1 184 3 6 52 6 7 214 1 3 49 0 2 5 23 15 193 0 4 182 1 3 742 1 0 197 1 0 116 5 4 977 2 5 6 15 0 142 0 1 38 4 5 65 0 1 16 0 2 92 0 1 108 2 1 471 0 1 182 0 5 13 8 13 312 0 1 272 17 1 387 2 0 41 1 0 45 3 1 63 24 24 48 1 0 17 2 1 73 chain 334464 chr18 80373285 + 53820921 53825047 L1PA5 6144 + 0 6144 6149 128 1 15 10 23 24 33 0 1 69 1 0 29 1 0 15 0 1 406 0 1 79 0 17 341 9 0 56 0 1975 75 3 0 656 0 1 166 4 15 120 0 1 69 6 4 35 0 8 36 1 0 230 14 16 685 4 5 87 1 0 367 2 1 49 0 1 303 1 3 11 chain 6126 chr18 80373285 + 53827588 53827811 MSTA 426 + 16 292 80629 30 6 22 28 32 56 25 74 87 28 chain 26514 chr18 80373285 + 53857905 53858200 L1PA2 6032 + 5732 6032 46957 280 1 6 14 chain 3481 chr18 80373285 + 53868141 53868180 MER33 330 + 249 288 95375 39 chain 20695 chr18 80373285 + 53955322 53955783 L1PB2 3958 + 3390 3837 55505 36 57 48 64 8 7 34 0 1 5 1 0 8 1 2 23 1 0 59 15 14 62 2 0 21 47 46 17 chain 91022 chr18 80373285 + 53962258 53963325 MER11C 1089 + 0 1073 19497 24 0 4 310 0 1 653 0 1 80 chain 14398 chr18 80373285 + 53970962 53971118 L1PA2 6032 + 5870 6026 63037 156 chain 94110 chr18 80373285 + 54065389 54066420 L1PA3long 6157 + 5125 6157 19027 778 0 1 253 chain 41273 chr18 80373285 + 54070442 54071002 MER41A 554 + 0 554 33806 94 14 13 105 7 4 13 1 2 87 2 0 3 1 0 233 chain 110659 chr18 80373285 + 54081887 54083504 THE1C-int 1605 + 25 1605 16989 304 10 16 95 91 17 229 26 28 31 0 9 360 10 6 5 1 0 113 18 38 71 0 1 26 8 11 4 0 1 215 chain 7440 chr18 80373285 + 54131635 54131729 LTR23 429 + 302 403 76271 43 0 7 51 chain 35269 chr18 80373285 + 54228640 54229119 MER84 505 + 12 497 37850 148 10 12 155 0 1 4 0 10 111 7 0 44 chain 133859 chr18 80373285 + 54289392 54290975 L1PA6 6164 + 4568 6153 13668 1432 11 13 140 chain 16496 chr18 80373285 + 54336268 54336520 THE1D 372 + 0 332 60384 67 18 19 37 10 89 120 chain 166965 chr18 80373285 + 54342498 54344593 SVA_F 1814 + 9 1814 11272 869 302 0 9 0 1 59 0 15 39 1 0 10 1 0 159 1 0 17 1 0 627 chain 18602 chr18 80373285 + 54343375 54343669 SVA_F 1814 + 888 1119 39402 58 79 16 157 chain 7072 chr18 80373285 + 54343433 54343512 SVA_F 1814 + 1010 1089 51514 79 chain 63022 chr18 80373285 + 54386595 54387364 LTR17 781 + 2 773 25619 172 1 2 151 1 0 99 4 5 301 0 1 40 chain 336911 chr18 80373285 + 54426981 54430581 L1HS 6032 + 2432 6032 6119 3600 chain 84237 chr18 80373285 + 54510120 54511485 L1MA1 4479 + 2789 4142 20760 12 1 3 58 1 0 10 5 4 40 10 9 23 11 10 27 2 0 163 10 9 18 4 0 54 45 38 59 0 1 65 1 0 50 0 9 68 2 0 196 2 1 23 2 0 31 1 0 47 10 9 20 2 0 13 1 0 19 2 9 36 6 7 17 1 0 5 3 0 52 5 6 68 1 0 29 0 1 34 chain 25644 chr18 80373285 + 54546167 54546546 THE1C 375 + 0 374 48253 125 3 0 101 34 33 24 7 6 85 chain 104170 chr18 80373285 + 54546547 54547996 THE1C-int 1605 + 0 1591 17802 111 0 54 162 0 6 112 0 7 150 1 0 41 12 7 42 0 8 52 6 0 196 1 0 4 5 6 263 3 20 52 16 20 17 24 82 179 chain 60100 chr18 80373285 + 54598503 54599261 MER4E 760 + 0 760 26344 22 1 2 127 0 9 10 13 6 57 1 0 4 1 2 371 1 0 150 chain 3735 chr18 80373285 + 54604073 54604114 L1PB 1623 + 670 711 93355 41 chain 51619 chr18 80373285 + 54604125 54604802 HERVK22-int 3844 + 940 1618 28991 287 26 25 298 0 2 66 chain 6384 chr18 80373285 + 54609723 54609801 L1P5 443 + 231 314 79734 72 0 5 6 chain 7597 chr18 80373285 + 54611403 54611540 L1PB1 5432 + 5118 5245 75878 20 1 0 6 1 0 13 18 12 50 1 0 18 1 0 8 chain 22375 chr18 80373285 + 54633701 54634017 L1PA8A 6298 + 5997 6291 53306 73 23 0 130 1 2 89 chain 3899 chr18 80373285 + 54821462 54821505 L1P1 4361 - 168 211 92128 43 chain 18455 chr18 80373285 + 54868252 54868495 MSTA 426 + 181 414 58158 28 10 0 205 chain 9545 chr18 80373285 + 54916751 54917109 THE1B 368 + 0 366 71376 15 2 0 32 32 39 19 129 138 6 5 0 42 29 28 47 chain 6876 chr18 80373285 + 54995300 54995377 L1PB1 5432 + 4636 4713 78048 77 chain 88261 chr18 80373285 + 55042430 55043536 L1PA10 4194 + 3048 4150 19993 75 3 1 396 0 1 560 0 1 24 2 1 9 3 0 34 chain 10771 chr18 80373285 + 55051635 55051862 MSTA 426 + 163 408 68917 40 24 26 7 3 0 53 36 56 17 1 0 46 chain 221408 chr18 80373285 + 55155364 55157956 L1PA5 6144 + 3537 6132 8993 145 2 1 42 1 0 621 0 2 308 1 2 85 3 1 516 42 45 51 0 1 775 chain 7887 chr18 80373285 + 55159396 55159501 THE1A 353 + 242 353 75158 68 1 8 13 1 0 22 chain 126522 chr18 80373285 + 55159502 55161050 THE1A-int 1579 + 1 1574 14479 492 5 6 4 1 0 100 0 25 303 2 1 4 0 1 637 chain 19783 chr18 80373285 + 55161055 55161360 THE1A 353 + 0 304 56696 109 17 17 74 24 23 81 chain 7123 chr18 80373285 + 55211358 55211450 MLT1B 390 + 281 374 77185 63 0 1 29 chain 29973 chr18 80373285 + 55665187 55665592 LTR12C 1709 + 979 1709 42082 18 6 231 212 0 101 86 6 5 77 chain 6776 chr18 80373285 + 55666234 55666320 MER51A 677 + 573 662 78398 41 0 3 45 chain 23043 chr18 80373285 + 55917036 55917419 THE1B 368 + 0 368 52303 15 14 6 23 8 24 104 3 2 18 2 0 134 28 8 34 chain 45829 chr18 80373285 + 55948100 55948652 MER41A 554 + 0 554 31145 229 3 4 197 0 1 123 chain 416534 chr18 80373285 + 55951612 55957511 HERVE_a-int 7009 + 135 7007 4930 19 5 2 28 4 2 73 2 0 6 3 1 24 1 0 3 1 0 8 1 0 8 1 0 14 54 44 11 28 0 34 4 2 25 1 0 39 6 5 21 1 0 54 1 0 34 1 0 98 1 0 12 1 0 15 2 1 33 1 0 10 1 0 51 7 5 26 1 0 38 4 5 24 1 0 26 1 0 8 1 0 72 3 2 32 1 0 40 2 0 14 1 0 52 1 0 21 1 0 15 10 8 10 20 15 11 1 0 16 1 0 22 1 0 4 10 8 10 2 1 4 1 0 5 1 0 57 4 2 55 1 0 23 1 0 16 6 5 109 2 1 19 1 0 20 2 1 11 1 0 17 1 0 10 2 1 4 1 0 19 2 1 41 1 0 38 1 0 62 1 0 36 1 0 8 1 0 34 1 0 22 0 2 20 1 0 23 1 0 17 1 0 24 2 0 97 8 1 8 2 1 25 6 4 29 13 8 17 7 5 6 1 0 146 1 0 14 1 0 38 1 0 168 1 0 379 0 3 21 3 2 88 1 0 414 0 571 106 0 576 89 1 2 367 0 27 97 15 6 106 1 0 11 27 25 75 1 0 7 1 0 41 1 0 24 1 0 86 1 0 12 1 0 258 2 0 94 9 8 15 1 0 3 1 0 57 2 0 18 1 0 13 1 0 81 2 0 138 1 0 42 1 0 29 4 3 10 1 0 16 1 0 5 2 0 7 2 1 36 1 0 21 5 4 28 0 4 11 1 0 3 1 0 28 7 5 55 12 7 29 3 0 54 3 1 27 1 0 30 1 0 6 3 1 13 1 0 24 2 0 34 4 2 15 34 26 22 3 1 5 1 0 11 chain 33685 chr18 80373285 + 55957518 55957981 LTR2 463 + 0 463 38937 154 6 7 219 17 18 13 1 0 28 1 0 24 chain 18521 chr18 80373285 + 55977513 55977860 L1PB3 3668 + 3281 3595 58081 10 1 0 97 4 3 72 34 19 12 1 0 9 1 0 25 16 7 31 7 3 15 1 0 11 chain 3853 chr18 80373285 + 55984166 55984208 MER63A 208 + 85 127 92486 42 chain 6732 chr18 80373285 + 56101138 56101256 MER20 218 + 34 156 78532 35 24 28 59 chain 255288 chr18 80373285 + 56130894 56133999 L1PA7 6471 + 3355 6465 8107 98 0 3 91 5 9 14 0 4 200 14 14 177 0 3 40 1 0 431 1 0 46 1 2 172 11 0 29 1 2 265 1 0 123 0 5 541 1 0 51 1 2 782 2 0 6 chain 284376 chr18 80373285 + 56153856 56157029 L1PA5 6144 + 2897 6076 7306 1167 0 1 282 0 4 271 0 1 1453 chain 6011 chr18 80373285 + 56159244 56159337 L1PB1 5432 + 5297 5387 81035 30 2 0 5 1 0 14 2 0 27 0 2 12 chain 40797 chr18 80373285 + 56243892 56244391 L1P1 4361 + 570 1062 34096 122 7 0 370 chain 13470 chr18 80373285 + 56244785 56244958 L1PB4 2604 + 2400 2572 64356 152 1 0 20 chain 5181 chr18 80373285 + 56252524 56252617 MLT1E3 631 + 506 607 84768 6 0 5 10 9 8 13 0 5 4 1 0 50 chain 3476 chr18 80373285 + 56398023 56398062 tRNA-Thr-ACA 39 + 0 39 95404 39 chain 35438 chr18 80373285 + 56415435 56415883 LTR7 482 + 0 482 37761 250 1 32 83 1 2 52 12 14 49 chain 300133 chr18 80373285 + 56415885 56419634 HERVH-int 3825 + 0 3825 6827 158 1 0 374 194 0 38 1 0 10 1 0 9 4 0 14 17 49 4 1 0 42 3 2 49 1 2 12 0 2 13 0 3 660 0 1 242 5 32 585 0 1 818 8 218 267 0 2 218 chain 4357 chr18 80373285 + 56416430 56416479 HERVH-int 3825 + 483 532 89131 49 chain 3506 chr18 80373285 + 56416492 56416533 HERVH-int 3825 + 540 580 95196 30 1 0 10 chain 3789 chr18 80373285 + 56416572 56416612 HERVH-int 3825 + 436 476 85565 40 chain 36524 chr18 80373285 + 56420893 56421341 LTR7 482 + 0 482 37064 261 0 31 73 1 2 52 12 14 49 chain 219895 chr18 80373285 + 56437975 56440909 L1PB1 5432 + 2501 5427 9045 986 7 0 92 16 23 130 1 0 186 0 1 43 1 0 30 7 6 166 0 4 191 5 7 70 0 1 54 0 18 122 4 0 340 0 1 131 1 2 10 4 1 18 1 0 13 22 17 6 2 0 9 0 5 35 1 0 12 18 17 33 2 1 12 28 18 15 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 4807 chr18 80373285 + 56494362 56494426 L1MB8 1703 + 1528 1592 86658 64 chain 9344 chr18 80373285 + 56496339 56496458 MER85 139 + 10 139 71831 82 0 10 37 chain 27136 chr18 80373285 + 56508406 56508766 THE1C 375 + 0 360 46069 181 5 6 163 1 0 10 chain 554415 chr18 80373285 + 56525569 56531694 L1PA3long 6157 + 5 6157 453 1658 0 2 127 0 5 1069 0 15 358 1 2 25 0 1 1393 0 1 495 0 1 414 0 1 585 chain 4852 chr18 80373285 + 56540279 56540358 MLT1A0 366 + 18 101 86418 11 0 1 10 0 2 15 8 9 35 chain 119798 chr18 80373285 + 56572103 56573539 LTR12C 1709 + 0 1707 15567 17 4 0 633 0 278 80 9 1 99 1 0 9 3 1 106 0 4 436 8 12 31 chain 8019 chr18 80373285 + 56579723 56579853 L1MCa 1829 + 1119 1518 74837 19 1 275 67 3 0 5 2 0 33 chain 4569 chr18 80373285 + 56660336 56660458 Tigger4a 237 - 115 237 87974 26 13 0 7 27 41 22 1 0 26 chain 22117 chr18 80373285 + 56812958 56813192 L1HS 6032 + 5797 6031 53675 234 chain 141034 chr18 80373285 + 56831543 56833344 L1P3 4156 + 6 1807 13023 116 1 0 127 15 14 58 1 0 85 4 0 268 14 15 111 6 7 403 0 4 102 0 1 490 chain 9123 chr18 80373285 + 56833363 56833478 L1PA7 6471 + 6325 6467 72300 49 2 29 64 chain 145479 chr18 80373285 + 56884655 56887046 L1PBa 3878 + 48 2101 12659 12 3 0 3 1 0 15 4 0 7 1 0 5 2 0 55 1 0 12 3 0 7 2 1 47 1 0 9 28 30 104 6 7 59 5 8 110 0 3 278 0 3 21 0 1 87 320 3 38 8 3 59 26 0 133 0 4 253 7 3 93 0 3 81 1 6 10 0 2 197 17 7 65 1 6 16 0 5 139 0 4 39 chain 9049 chr18 80373285 + 56942536 56942693 MER6A 605 + 365 524 72450 72 1 0 5 3 7 38 15 14 23 chain 4546 chr18 80373285 + 57032850 57032912 MER1A 529 + 394 456 88078 50 1 0 5 0 1 6 chain 5474 chr18 80373285 + 57041974 57042059 MER58D 378 + 253 354 83336 22 14 30 49 chain 68312 chr18 80373285 + 57042484 57043294 L1PA7 6471 + 5659 6470 24384 64 0 6 584 0 1 86 6 0 70 chain 17143 chr18 80373285 + 57097776 57098476 L1PB1 5432 + 5042 5391 59646 61 393 64 53 18 16 45 1 0 15 3 0 6 16 6 19 2 0 5 1 0 14 2 0 24 1 0 21 chain 20225 chr18 80373285 + 57111197 57111578 THE1C 375 + 0 375 56106 58 29 24 42 52 54 12 6 5 154 1 0 8 2 1 17 chain 9834 chr18 80373285 + 57211081 57211198 MER41B 635 + 127 244 70755 117 chain 329292 chr18 80373285 + 57226193 57229996 L1PA6 6164 + 2339 6149 6229 387 1 0 4 1 2 1918 0 5 331 1 2 309 0 1 509 1 0 24 0 1 183 1 0 5 1 2 127 chain 546884 chr18 80373285 + 57259699 57265728 L1PA2 6032 + 3 6032 918 253 1 0 690 1 2 326 9 0 9 0 9 4740 chain 58337 chr18 80373285 + 57294702 57295527 Charlie3 2679 + 19 2603 26855 13 9 8 15 9 13 113 20 30 259 0 1747 62 5 4 320 chain 30838 chr18 80373285 + 57311191 57311586 MER57B1 401 + 0 397 41276 189 6 7 151 0 1 49 chain 43623 chr18 80373285 + 57313933 57314448 L1PA7 6471 + 5950 6464 32368 448 4 3 63 chain 239820 chr18 80373285 + 57392268 57396590 L1MA2 4263 + 302 4105 8477 20 11 0 11 12 6 6 0 1 104 3 10 22 39 35 90 0 7 19 1 0 288 0 9 67 7 11 32 0 1 9 8 237 13 7 5 24 0 4 172 0 4 152 0 2 299 284 4 80 6 5 192 8 16 94 1 2 241 510 0 166 0 2 133 5 6 40 0 1 89 5 6 21 27 27 67 7 34 219 0 1 26 1 4 111 10 11 6 1 0 14 16 12 68 3 2 116 31 28 148 13 11 93 15 8 39 chain 20876 chr18 80373285 + 57419794 57420055 L1PA7 6471 + 6212 6469 55284 98 2 1 145 3 0 13 chain 38088 chr18 80373285 + 57457687 57458129 L1PA6 6164 + 5720 6162 36001 442 chain 14430 chr18 80373285 + 57492253 57492534 L1PB1 5432 + 5167 5424 62992 53 2 1 16 1 0 44 1 0 15 3 0 7 15 6 16 26 21 23 2 1 21 1 0 13 1 0 16 1 0 4 chain 120934 chr18 80373285 + 57495494 57496823 L1PA3long 6157 + 4824 6156 15357 88 2 1 397 0 4 842 chain 43398 chr18 80373285 + 57526438 57527019 MLT2A2 560 + 0 560 32510 17 0 4 183 0 1 161 29 5 142 2 0 47 chain 26192 chr18 80373285 + 57546594 57547303 THE1C-int 1605 + 1221 1599 47438 77 356 26 62 0 1 170 0 1 12 4 1 28 chain 33006 chr18 80373285 + 57572146 57572519 L1PA5 6144 + 5703 6091 39509 70 0 16 6 1 0 296 chain 3588 chr18 80373285 + 57577253 57577326 MER58A 224 + 42 116 94530 39 22 23 12 chain 10867 chr18 80373285 + 57582213 57582435 Tigger4a 237 + 7 237 68744 102 74 82 46 chain 25019 chr18 80373285 + 57628460 57628796 MER41D 557 + 16 368 49246 46 5 18 116 0 3 169 chain 3356 chr18 80373285 + 57655871 57655933 LTR67B 553 + 62 127 96535 5 0 2 6 2 0 30 5 8 14 chain 3376 chr18 80373285 + 57678621 57678659 tRNA-Gly-GGA 38 + 0 38 96340 38 chain 3376 chr18 80373285 + 57678944 57678982 tRNA-Gly-GGA 38 + 0 38 96339 38 chain 10646 chr18 80373285 + 57687385 57687510 MER85 139 + 0 135 69134 89 0 10 36 chain 556594 chr18 80373285 + 57719248 57725264 L1PA2 6032 + 2 6032 322 517 0 2 45 0 12 5454 chain 59227 chr18 80373285 + 57734821 57735590 LTR17 781 + 0 772 26598 119 0 9 15 0 1 54 21 11 70 0 2 18 10 0 29 0 1 8 11 21 34 1 0 39 0 1 340 chain 8453 chr18 80373285 + 57755393 57755494 U6 107 + 0 101 73790 101 chain 30380 chr18 80373285 + 57820741 57821130 MER1A 529 + 128 529 41692 126 1 10 193 11 14 58 chain 4495 chr18 80373285 + 57836834 57836905 MER34C 514 + 42 106 88362 48 1 0 6 6 0 10 chain 29119 chr18 80373285 + 57857372 57857769 LTR7 482 + 1 482 43162 50 26 64 109 0 1 8 0 31 41 0 1 79 0 13 84 chain 21063 chr18 80373285 + 57879911 57880209 THE1B 368 + 0 306 55045 34 4 9 126 1 0 33 1 0 7 1 5 18 1 0 6 0 2 66 chain 11780 chr18 80373285 + 58095815 58096039 MER30 238 + 0 238 67253 15 31 35 49 12 26 14 2 1 59 3 0 39 chain 29622 chr18 80373285 + 58179475 58179995 MER1A 529 + 0 529 42458 14 4 27 39 61 63 8 3 0 7 0 3 10 1 0 40 1 0 231 1 0 5 0 1 11 28 14 56 chain 23436 chr18 80373285 + 58434225 58434520 THE1A 353 + 0 294 51700 110 1 0 91 1 0 14 0 1 78 chain 10918 chr18 80373285 + 58434540 58434700 L1PA10 4194 + 4005 4161 68672 11 3 4 86 2 1 9 3 0 34 1 0 11 chain 5680 chr18 80373285 + 58459845 58459936 LTR12C 1709 + 932 1023 60320 91 chain 21390 chr18 80373285 + 58459936 58460221 LTR12C 1709 + 704 1203 54646 133 1 0 90 5 220 56 chain 3085 chr18 80373285 + 58460256 58460291 LTR12C 1709 + 683 718 98926 35 chain 44904 chr18 80373285 + 58491107 58491702 LTR8 732 + 0 622 31637 303 15 16 205 2 0 16 0 28 54 chain 39464 chr18 80373285 + 58508312 58508863 MER41A 554 + 0 554 35030 54 1 0 79 23 1 166 7 4 21 0 1 9 0 1 6 0 27 185 chain 5877 chr18 80373285 + 58534589 58534681 MER5A 189 + 42 166 81570 31 7 36 12 0 3 42 chain 4269 chr18 80373285 + 58607714 58608153 LTR37B 484 + 0 480 89711 35 18 17 13 164 192 28 161 175 20 chain 16887 chr18 80373285 + 58619502 58619739 MER75B 242 + 1 238 59926 190 5 9 22 1 0 4 3 0 12 chain 26539 chr18 80373285 + 58680675 58680955 AluYb8 318 + 34 314 46915 280 chain 7370 chr18 80373285 + 58692504 58692591 Tigger1 2417 + 365 452 76479 87 chain 21360 chr18 80373285 + 58694915 58695257 THE1B 368 + 1 367 54693 39 0 15 65 0 1 48 1 0 18 11 8 4 1 0 15 17 29 102 7 8 14 chain 13360 chr18 80373285 + 58724528 58724726 Tigger4b 360 + 0 228 64525 36 0 17 50 17 30 95 chain 3857 chr18 80373285 + 58836498 58836539 L1MB3 1562 + 1439 1480 92420 41 chain 4587 chr18 80373285 + 59002670 59002722 MER63C 923 + 143 195 87863 52 chain 36838 chr18 80373285 + 59025627 59026089 L1PA8 5853 + 5395 5850 36855 169 1 0 44 2 0 74 1 0 6 1 0 51 3 2 19 1 0 90 chain 15381 chr18 80373285 + 59071933 59072137 MER51B 395 + 193 395 61811 6 2 0 46 1 0 8 0 1 141 chain 28863 chr18 80373285 + 59113803 59114117 AluYa5 310 + 0 310 43533 132 3 0 164 1 0 14 chain 341546 chr18 80373285 + 59114784 59118652 L1PA5 6144 + 2258 6138 6036 47 0 2 502 0 2 315 0 1 40 1 0 1476 0 6 1201 0 1 141 5 6 140 chain 2537 chr18 80373285 + 59132469 59132547 MER52C 1267 + 1010 1052 103468 23 37 1 18 chain 250753 chr18 80373285 + 59203419 59207286 MER61-int 3695 + 0 3640 8212 28 5 1 21 1 0 7 0 1 20 25 21 174 1 0 62 0 1 75 15 1 130 1 6 53 0 1 43 0 96 25 0 1 69 22 27 121 13 6 450 0 1 165 13 18 298 21 44 163 4 3 210 310 0 268 7 0 4 7 0 151 1 0 39 0 1 26 0 1 14 50 46 86 20 21 146 0 1 4 4 2 202 29 27 48 2 3 143 9 13 17 15 5 30 chain 124633 chr18 80373285 + 59255009 59256444 SVA_B 1603 + 52 1603 14760 297 6 5 438 1 2 22 0 40 96 1 78 259 0 1 308 2 0 5 chain 535494 chr18 80373285 + 59256648 59262770 L1PA4 6152 + 3 6143 1596 242 0 1 572 18 18 1734 4 8 344 0 2 1432 0 4 258 0 1 167 0 1 11 0 1 505 0 4 835 chain 9951 chr18 80373285 + 59321372 59321514 MER51A 677 + 1 135 70526 113 15 7 14 chain 24187 chr18 80373285 + 59482254 59482535 L1PA8 5853 + 5153 5434 50516 281 chain 27106 chr18 80373285 + 59545612 59545967 THE1A 353 + 0 353 46118 47 0 1 48 1 0 227 2 0 30 chain 22363 chr18 80373285 + 59560321 59560609 L1PA8 5853 + 5565 5847 53325 43 2 0 74 1 0 6 1 0 52 2 1 19 1 0 87 chain 26098 chr18 80373285 + 59571307 59571623 L1PA5 6144 + 5814 6132 47577 224 4 5 19 0 1 69 chain 3504 chr18 80373285 + 59572879 59572922 MLT2C2 476 + 39 82 95216 43 chain 91347 chr18 80373285 + 59577842 59578964 L1PA7 6471 + 5341 6469 19444 257 1 5 11 0 5 81 0 2 103 0 3 359 0 4 49 5 0 99 1 0 142 6 0 8 chain 57603 chr18 80373285 + 59583866 59584510 L1PA3long 6157 + 5513 6157 27081 644 chain 16601 chr18 80373285 + 59667934 59668135 L1PA7 6471 + 6268 6466 60266 85 1 0 106 2 0 7 chain 40256 chr18 80373285 + 59674125 59674627 L1PA7 6471 + 5960 6465 34472 130 1 0 67 7 11 17 0 3 271 3 0 6 chain 20685 chr18 80373285 + 59753880 59754224 THE1B 368 + 0 368 55518 21 0 6 13 0 15 48 4 0 48 11 10 8 1 0 29 35 45 51 1 0 74 chain 19182 chr18 80373285 + 59766861 59767220 MSTA 426 + 16 426 57367 69 23 44 4 1 0 10 13 19 22 54 79 163 chain 515218 chr18 80373285 + 59771363 59777442 L1PA6 6164 + 0 6162 2505 273 1 2 135 17 17 27 0 4 132 0 4 165 0 5 36 0 34 352 0 3 327 0 1 4 1 0 113 0 1 698 0 1 848 6 9 49 0 4 50 6 8 220 0 1 4 1 0 176 1 0 144 0 1 82 11 10 1440 0 26 428 0 1 181 1 0 140 4 0 6 chain 13494 chr18 80373285 + 59827133 59827327 MER41B 635 + 0 191 64322 125 1 2 38 13 9 17 chain 25366 chr18 80373285 + 59838525 59838808 L1PA4 6152 + 5868 6151 48675 283 chain 13954 chr18 80373285 + 59876548 59876791 L1MA5A 2387 + 1971 2212 63664 18 14 18 26 2 1 35 1 0 39 1 0 47 2 0 13 1 3 5 2 0 10 1 0 26 chain 5130 chr18 80373285 + 59942087 59942155 MLT1C 463 + 57 124 85018 29 1 0 38 chain 30880 chr18 80373285 + 59949968 59950340 MLT2A2 560 + 178 560 41238 25 0 1 106 0 9 241 chain 14580 chr18 80373285 + 59993158 59993476 THE1D 372 + 0 332 62819 13 0 2 34 9 0 7 6 11 16 10 11 72 72 87 79 chain 19459 chr18 80373285 + 60069667 60069916 L1PA8 5853 + 5608 5853 57082 70 2 1 9 1 0 52 2 1 16 5 4 92 chain 66847 chr18 80373285 + 60105691 60106740 L1PA15 4387 + 3235 4267 24736 89 0 1 213 0 6 188 0 1 80 2 0 13 6 0 64 5 3 39 1 0 62 6 0 7 0 3 11 2 0 85 97 94 11 21 15 47 chain 49929 chr18 80373285 + 60133890 60134471 L1PA5 6144 + 5565 6144 29590 69 2 0 510 chain 13304 chr18 80373285 + 60200961 60201241 L1PB1 5432 + 5134 5391 64611 11 2 1 10 6 2 11 2 0 28 0 1 22 2 1 15 1 0 60 21 12 19 9 6 13 3 1 23 2 1 20 chain 115770 chr18 80373285 + 60273643 60274917 L1PA3long 6157 + 4877 6155 16276 433 0 4 841 chain 236613 chr18 80373285 + 60303365 60306056 L1PA4 6152 + 3442 6152 8554 164 1 0 37 0 4 709 0 4 275 1 0 573 0 1 95 0 5 410 0 5 419 0 2 7 chain 26679 chr18 80373285 + 60308585 60308923 L1PA6 6164 + 5832 6162 46716 170 15 7 153 chain 379665 chr18 80373285 + 60332174 60337507 L1PB1 5432 + 39 5391 5488 29 4 12 166 1 2 129 6 5 22 3 0 2 0 3 122 0 5 76 0 3 73 0 1 66 2 1 9 0 1 124 0 4 283 5 6 212 1 0 6 2 0 5 22 12 183 25 29 216 0 4 259 0 4 167 14 15 155 0 5 38 3 0 6 0 1 190 1 2 45 6 5 100 3 1 362 7 13 47 0 1 184 0 2 21 1 3 138 0 1 112 1 0 5 1 0 48 0 1 39 0 4 138 0 5 99 18 97 42 0 2 323 1 3 66 6 10 12 0 1 56 0 1 9 6 0 211 0 2 198 69 4 14 3 0 21 1 0 5 16 15 9 2 0 19 4 1 33 2 1 16 18 3 41 1 0 15 1 0 4 8 6 5 8 0 16 8 5 14 2 0 24 2 1 20 chain 20382 chr18 80373285 + 60365539 60365755 AluYa5 310 + 85 301 55908 216 chain 44441 chr18 80373285 + 60410490 60411055 MLT2A2 560 + 0 560 31864 203 0 1 20 12 10 72 4 0 254 chain 4194 chr18 80373285 + 60412201 60412477 MLT1B 390 + 113 378 90175 11 6 13 29 194 176 36 chain 74284 chr18 80373285 + 60432196 60433018 L1PA3long 6157 + 5332 6157 23004 164 0 3 658 chain 58866 chr18 80373285 + 60473644 60474405 L1PA8 5853 + 5095 5846 26715 299 4 0 170 1 0 46 2 0 69 14 13 48 2 1 19 2 1 85 chain 34051 chr18 80373285 + 60572939 60573447 L1MA2 4263 + 3440 3933 38670 126 23 20 133 10 0 73 25 23 118 chain 116090 chr18 80373285 + 60647296 60648632 L1PA4 6152 + 4511 5829 16215 214 4 0 16 4 0 436 11 1 651 chain 14123 chr18 80373285 + 60674141 60674355 L1PA8 5853 + 5643 5853 63418 35 22 20 42 2 1 19 1 0 93 chain 210714 chr18 80373285 + 60710607 60713077 HERV17-int 4347 + 1871 4346 9330 901 0 1 374 1 0 494 1 0 302 0 5 55 1 2 341 chain 27465 chr18 80373285 + 60713392 60713716 LTR17 781 + 0 323 45619 119 0 9 171 10 0 24 chain 15802 chr18 80373285 + 60738953 60739162 L1PA8 5853 + 5648 5853 61284 31 1 0 14 1 0 47 2 1 19 1 0 93 chain 68188 chr18 80373285 + 60793593 60794416 L1PA7 6471 + 5641 6465 24409 65 1 0 242 1 5 183 0 1 322 3 0 6 chain 149096 chr18 80373285 + 60802576 60804392 L1PA8 5853 + 4028 5853 12409 267 0 14 25 3 0 259 0 1 411 1 4 555 1 0 44 2 0 70 2 1 9 1 0 10 1 2 40 2 1 19 1 0 93 chain 24288 chr18 80373285 + 60914132 60914422 L1PA4 6152 + 5859 6152 50348 269 0 6 6 3 0 12 chain 131673 chr18 80373285 + 60927487 60928923 L1PA3long 6157 + 4722 6157 13858 585 1 0 850 chain 37393 chr18 80373285 + 60985503 60985965 LTR2 463 + 0 463 36478 360 14 15 88 chain 4497 chr18 80373285 + 61000671 61000780 LTR41B 718 + 598 707 88344 15 2 0 7 1 2 18 20 22 4 1 0 41 chain 56669 chr18 80373285 + 61045484 61046343 L1PB2 3958 + 2958 3838 27370 156 1 0 28 0 2 103 7 11 49 2 0 6 0 1 49 1 0 14 30 62 12 7 0 81 9 8 77 1 0 15 0 1 48 1 0 41 5 3 27 3 1 22 1 0 63 chain 83462 chr18 80373285 + 61051397 61052322 L1PA3long 6157 + 4450 5379 20921 860 0 4 65 chain 55671 chr18 80373285 + 61075511 61076112 L1PA2 6032 + 5429 6030 27672 601 chain 14700 chr18 80373285 + 61115430 61115776 L1PB1 5432 + 5105 5422 62680 33 1 0 8 1 0 12 5 1 10 2 0 6 0 3 42 3 1 16 4 3 41 1 0 15 1 0 6 59 44 26 1 0 18 2 1 13 1 0 12 1 0 6 chain 91573 chr18 80373285 + 61144758 61145756 L1PA2 6032 + 5022 6021 19400 851 0 1 147 chain 114707 chr18 80373285 + 61178118 61179700 THE1B-int 1605 + 0 1605 16430 47 0 1 19 0 4 47 54 0 119 5 12 46 14 15 87 0 64 227 18 20 78 4 0 554 0 1 254 0 1 9 chain 28425 chr18 80373285 + 61247160 61247487 L1PA7 6471 + 6140 6467 44229 327 chain 390037 chr18 80373285 + 61264431 61270481 L1PB1 5432 + 68 5420 5322 338 2 0 138 1 0 240 1 2 74 0 2 13 466 0 322 1 46 154 9 0 199 0 6 104 1 3 4 0 1 155 5 6 391 0 3 222 4 1 110 11 23 720 0 6 142 1 0 47 0 2 109 214 44 347 0 1 47 0 1 17 99 9 428 0 1 4 1 0 35 0 1 19 0 1 19 4 1 176 32 40 153 22 24 84 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61508935 61508991 L1PB1 5432 + 5166 5222 87712 56 chain 9219 chr18 80373285 + 61509011 61509195 L1PB1 5432 + 5240 5404 72083 41 1 0 15 25 13 18 8 5 14 2 0 24 1 0 21 1 0 13 chain 36755 chr18 80373285 + 61515527 61515945 L1PA2 6032 + 5617 6029 36920 188 1 2 214 7 0 8 chain 498134 chr18 80373285 + 61517736 61524062 L1PA7 6471 + 416 6461 3197 521 9 12 780 0 1 29 1 0 63 4 0 5 1 5 227 6 7 566 9 0 77 308 1 279 1 0 34 5 8 132 1 0 76 2 5 13 0 4 6 2 10 226 1 0 311 3 4 17 0 1 390 0 1 82 0 4 356 1 5 258 0 1 476 0 2 210 5 0 79 0 2 96 1 0 51 2 0 324 0 7 133 0 1 147 chain 9999 chr18 80373285 + 61585339 61585458 MER85 139 + 10 139 70426 79 0 10 40 chain 4224 chr18 80373285 + 61591564 61591627 MLT1B 390 + 4 71 89977 51 1 5 11 chain 10724 chr18 80373285 + 61613703 61613863 MER34C_ 573 + 32 198 69005 102 24 30 34 chain 21537 chr18 80373285 + 61616642 61616867 AluYa5 310 + 85 310 54453 225 chain 53375 chr18 80373285 + 61625300 61626013 MER4E1 777 + 54 773 28446 80 5 7 48 0 1 242 0 13 65 1 0 20 24 15 228 chain 9616 chr18 80373285 + 61634920 61635109 MER39 703 + 0 198 71231 17 4 3 50 3 0 10 12 0 11 6 16 16 3 19 11 1 0 45 chain 11819 chr18 80373285 + 61703459 61703608 LTR26 622 + 473 622 67171 149 chain 244747 chr18 80373285 + 61715327 61718454 L1PA2 6032 + 2889 6032 8357 292 0 19 917 8 5 1910 chain 20643 chr18 80373285 + 61718459 61718745 MER41C 542 + 259 542 55570 51 7 8 10 4 0 214 chain 39943 chr18 80373285 + 61781061 61781650 L1PB1 5432 + 4746 5327 34704 105 1 2 250 0 11 24 26 20 9 2 0 52 1 0 16 3 2 44 2 1 21 14 5 19 chain 11456 chr18 80373285 + 61840174 61840309 MLT1A0 366 + 215 350 67822 135 chain 29767 chr18 80373285 + 61903541 61903856 L1HS 6032 + 5717 6032 42278 315 chain 25675 chr18 80373285 + 61985227 61985629 THE1C 375 + 8 375 48209 169 76 41 157 chain 26262 chr18 80373285 + 62000146 62000501 THE1B 368 + 0 368 47333 44 0 15 113 12 11 9 2 0 81 0 1 94 chain 44386 chr18 80373285 + 62034339 62034923 THE1B-int 1605 + 1008 1600 31891 51 0 3 6 0 1 231 14 11 111 0 9 20 10 8 141 chain 32415 chr18 80373285 + 62063707 62064081 L1PA5 6144 + 5763 6137 40026 374 chain 53046 chr18 80373285 + 62097020 62097586 L1HS 6032 + 4965 5531 28558 566 chain 40234 chr18 80373285 + 62136949 62137483 MLT2A2 560 + 0 560 34491 33 0 5 99 0 5 89 0 1 174 9 20 124 0 4 6 chain 48691 chr18 80373285 + 62166418 62167066 L1PA8 5853 + 5207 5853 30053 167 0 1 58 0 1 123 8 7 44 2 0 13 0 4 54 1 0 8 2 0 53 6 5 15 2 1 92 chain 30574 chr18 80373285 + 62240881 62241309 MER83 447 + 0 439 41499 162 1 0 93 6 22 119 20 16 27 chain 4196 chr18 80373285 + 62273675 62273757 MER3 215 + 113 198 90147 17 22 25 43 chain 15971 chr18 80373285 + 62280944 62281141 MER107 203 + 0 203 61065 173 0 6 24 chain 25951 chr18 80373285 + 62323371 62323714 THE1B 368 + 0 368 47791 24 1 0 15 1 16 80 0 1 36 2 1 149 0 11 35 chain 7708 chr18 80373285 + 62330811 62330908 HY3 101 + 0 96 75605 50 1 0 46 chain 33967 chr18 80373285 + 62395325 62395767 MLT2A1 477 + 0 477 38731 169 4 1 215 4 0 6 5 43 31 0 4 8 chain 36164 chr18 80373285 + 62419315 62419765 L1PA6 6164 + 5712 6161 37300 110 5 4 177 2 1 11 2 3 143 chain 46479 chr18 80373285 + 62447928 62448483 MLT2A2 560 + 0 560 30857 76 2 6 121 0 1 356 chain 6649 chr18 80373285 + 62478047 62478168 MER85 139 + 0 134 78815 31 7 8 29 7 9 12 0 10 35 chain 10713 chr18 80373285 + 62482341 62482458 HERV17-int 4347 + 4229 4346 69024 117 chain 28262 chr18 80373285 + 62482773 62483090 LTR17 781 + 0 326 44462 119 0 9 198 chain 4274 chr18 80373285 + 62488614 62488741 Charlie1a 1436 + 4 127 89669 14 63 59 50 chain 9704 chr18 80373285 + 62502298 62502422 L1MB5 1630 + 796 922 71035 80 1 3 43 chain 5078 chr18 80373285 + 62504807 62504868 MER47B 469 + 338 399 85258 61 chain 11196 chr18 80373285 + 62559867 62560001 MER2 342 + 111 248 68250 11 0 3 123 chain 15759 chr18 80373285 + 62640091 62640429 L1PB1 5432 + 5114 5422 61339 24 1 0 4 3 2 9 21 15 52 2 1 16 1 0 45 1 0 11 26 15 18 1 0 5 11 9 8 2 0 22 1 0 22 1 0 12 1 0 18 chain 5745 chr18 80373285 + 62642113 62642212 MLT1D 503 + 63 171 82154 50 23 32 26 chain 43958 chr18 80373285 + 62652571 62653071 LTR2C 499 + 0 499 32155 102 1 0 397 chain 8786 chr18 80373285 + 62736191 62736304 MER5A1 166 + 15 131 73023 83 0 3 30 chain 3380 chr18 80373285 + 62856133 62856170 MER2 342 + 252 289 96290 37 chain 565525 chr18 80373285 + 62906292 62912314 L1HS 6032 + 0 6031 83 1283 0 9 4739 chain 33727 chr18 80373285 + 62985723 62986101 L1PA3long 6157 + 5778 6152 38899 10 4 0 364 chain 16496 chr18 80373285 + 62994996 62995307 THE1D 372 + 15 332 60383 12 3 2 22 9 0 23 4 5 87 59 74 92 chain 41500 chr18 80373285 + 63003124 63003657 MLT2A2 560 + 1 560 33672 132 18 19 51 0 1 160 0 19 13 0 5 159 chain 29859 chr18 80373285 + 63068387 63068761 THE1C 375 + 0 375 42173 158 0 1 20 1 2 169 1 0 25 chain 4831 chr18 80373285 + 63114182 63114296 MER33 330 + 14 129 86535 48 43 44 23 chain 23504 chr18 80373285 + 63251390 63251655 AluY 311 + 29 293 51584 94 1 0 170 chain 13064 chr18 80373285 + 63306755 63306952 MER30 238 + 0 230 64996 13 9 33 61 4 16 76 3 0 31 chain 9467 chr18 80373285 + 63373595 63373795 L1MD1 2063 + 1446 1646 71566 11 8 9 36 52 51 93 chain 3575 chr18 80373285 + 63414978 63415042 MER3 215 + 89 184 94619 34 12 43 18 chain 25843 chr18 80373285 + 63554765 63555143 THE1D 372 + 0 372 47949 39 17 8 138 0 8 9 17 11 125 0 1 33 chain 169608 chr18 80373285 + 63628300 63630198 L1PA3long 6157 + 3224 6157 11122 183 0 1036 1568 2 1 145 chain 38139 chr18 80373285 + 63648105 63648555 LTR14C 587 + 0 451 35962 102 0 1 348 chain 26893 chr18 80373285 + 63662611 63662964 THE1A 353 + 0 353 46417 111 1 0 114 3 4 124 chain 91566 chr18 80373285 + 63665280 63666354 MER11C 1089 + 0 1073 19402 573 3 2 97 1 0 219 0 1 181 chain 284550 chr18 80373285 + 63688835 63692752 L1PA10 4194 + 252 4137 7299 19 47 38 4 1 0 22 2 0 18 16 14 5 0 3 7 8 0 12 4 0 9 1 0 69 18 7 10 6 17 92 25 14 89 1 0 87 1 0 57 16 0 127 0 2 194 4 0 5 0 3 92 7 7 245 26 25 100 3 1 5 0 2 59 4 5 415 6 7 83 0 4 397 0 1 38 0 1 13 4 8 94 0 3 155 9 8 186 2 0 160 0 8 46 0 2 193 16 18 5 0 3 6 3 0 546 3 0 20 chain 39826 chr18 80373285 + 63734082 63734514 L1PA3long 6157 + 5715 6147 34797 432 chain 66835 chr18 80373285 + 63734523 63735446 L1MA2 4263 + 215 1163 24737 34 0 2 5 0 2 146 1 0 62 0 6 10 1 0 4 0 1 249 2 0 36 0 15 62 12 14 79 26 27 194 chain 65365 chr18 80373285 + 63748233 63749096 L1PA8 5853 + 5004 5853 25094 5 2 0 58 9 5 12 2 3 477 1 0 43 3 0 71 2 1 8 3 1 52 2 1 19 10 9 84 chain 26145 chr18 80373285 + 63759619 63759967 THE1A 353 + 6 353 47505 25 1 0 44 0 1 26 9 8 243 chain 131135 chr18 80373285 + 63759967 63761535 THE1A-int 1579 + 0 1573 13913 15 0 2 90 0 3 336 0 1 623 2 1 502 chain 27628 chr18 80373285 + 63761541 63761901 THE1A 353 + 0 353 45421 110 1 0 183 7 1 59 chain 44342 chr18 80373285 + 63790762 63791298 L1PA7 6471 + 5933 6468 31922 198 0 1 176 7 6 5 1 0 149 chain 339734 chr18 80373285 + 63862795 63866418 L1HS 6032 + 2407 6030 6077 3623 chain 275929 chr18 80373285 + 63940375 63943897 L1P2 5180 + 2 3530 7553 132 31 16 97 6 5 245 15 14 4 1 0 29 6 7 229 3 0 5 0 2 6 2 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0 263 0 66 24 2 0 193 9 119 95 0 12 64 chain 29200 chr18 80373285 + 64681730 64682131 LTR7 482 + 0 482 43041 69 8 46 109 1 31 5 0 2 52 0 10 41 1 2 115 chain 281396 chr18 80373285 + 64682133 64685668 HERVH-int 3825 + 0 3825 7389 333 1 0 41 5 0 160 5 0 23 0 3 10 1 0 10 1 0 12 11 80 26 2 1 80 0 1 4 2 0 314 0 2 33 0 4 6 5 1 79 15 0 208 9 0 41 1 0 213 4 31 290 1 15 116 0 3 139 21 21 625 1 0 145 9 11 39 8 218 228 1 0 25 7 9 225 chain 27940 chr18 80373285 + 64686922 64687323 LTR7 482 + 0 482 44967 69 8 46 109 6 7 32 1 32 19 0 10 41 1 2 115 chain 54049 chr18 80373285 + 64690207 64690817 L1PA5 6144 + 5528 6138 28212 610 chain 99020 chr18 80373285 + 64880083 64881158 L1PA2 6032 + 4955 6029 18411 932 1 0 142 chain 21453 chr18 80373285 + 64970618 64970864 L1PA2 6032 + 5786 6032 54580 246 chain 33735 chr18 80373285 + 65055410 65055795 L1PA5 6144 + 5151 5535 38892 143 1 0 241 chain 64844 chr18 80373285 + 65088335 65089115 L1PA5 6144 + 5368 6132 25228 522 0 1 97 12 17 20 22 0 107 chain 81782 chr18 80373285 + 65137870 65138777 L1PA4 6152 + 5064 5970 21282 834 1 0 72 chain 505331 chr18 80373285 + 65166414 65172444 L1PA5 6144 + 4 6144 2952 120 0 14 21 7 19 361 0 1 24 0 1 135 1 2 467 9 0 459 6 1 368 0 4 149 0 9 150 14 9 288 0 1 569 2 0 27 1 0 677 0 1 160 0 1 210 0 3 266 0 85 22 1 0 666 1 0 518 0 1 331 chain 55407 chr18 80373285 + 65173555 65174499 L1PB1 5432 + 4513 5416 27745 113 12 0 302 8 11 56 1 3 105 1 0 9 19 18 4 1 0 12 1 0 11 6 2 8 2 0 53 2 1 10 8 7 39 7 6 13 14 1 30 32 27 16 1 0 21 1 0 13 1 0 12 chain 13194 chr18 80373285 + 65183781 65183957 L1PA5 6144 + 5968 6144 64791 13 1 6 6 5 0 151 chain 30130 chr18 80373285 + 65223572 65223934 L1PA5 6144 + 4913 5275 41911 362 chain 34489 chr18 80373285 + 65223934 65224352 L1PA5 6144 + 5279 5696 38361 323 7 6 88 chain 10776 chr18 80373285 + 65265449 65265589 L1PA7 6471 + 6325 6468 68908 126 0 1 4 0 2 10 chain 20403 chr18 80373285 + 65316260 65316510 L1PA7 6471 + 6217 6467 55880 250 chain 34289 chr18 80373285 + 65419837 65420204 L1PA3long 6157 + 5347 5714 38500 367 chain 28672 chr18 80373285 + 65522375 65522756 L1PA7 6471 + 6077 6468 43841 59 0 1 103 0 2 156 3 9 11 9 0 8 0 9 16 0 1 16 chain 106451 chr18 80373285 + 65535148 65536745 L1PB1 5432 + 3825 5392 17499 161 1 0 94 1 0 33 10 7 85 0 2 4 1 0 7 6 1 208 21 29 13 0 4 139 4 9 82 0 2 99 10 2 6 0 4 287 1 0 9 12 5 18 1 0 9 3 2 12 5 1 9 2 0 14 4 5 33 2 1 15 1 0 45 1 0 9 30 18 19 2 0 5 1 0 14 2 0 24 1 0 22 chain 53762 chr18 80373285 + 65544968 65545629 L1PA7 6471 + 5793 6459 28299 403 0 4 74 0 1 48 0 1 4 1 0 131 chain 70877 chr18 80373285 + 65557094 65557924 L1PA5 6144 + 4934 5771 23781 107 0 2 12 0 5 209 4 0 25 1 0 88 0 1 374 0 4 10 chain 7690 chr18 80373285 + 65599610 65599705 MER47A 366 + 105 200 75651 95 chain 116872 chr18 80373285 + 65605071 65606511 LTR12C 1709 + 0 1702 16074 500 13 14 143 0 285 170 1 0 4 4 2 106 0 4 390 8 7 22 25 1 54 chain 49995 chr18 80373285 + 65633376 65634067 L1PA8 5853 + 5184 5853 29559 380 1 0 44 2 0 69 3 2 8 4 3 54 31 17 68 0 1 16 4 0 7 chain 33269 chr18 80373285 + 65651420 65651858 LTR71A 459 + 0 459 39289 129 14 36 35 1 2 243 2 0 14 chain 17508 chr18 80373285 + 65670117 65670311 L1PA3long 6157 + 5962 6157 59235 190 0 1 4 chain 20983 chr18 80373285 + 65713768 65714031 AluSp 311 + 10 298 55148 43 10 35 210 chain 28298 chr18 80373285 + 65719402 65719707 AluYa5 310 + 0 304 44420 132 1 0 172 chain 7310 chr18 80373285 + 65875076 65875180 MER30 238 + 131 238 76634 65 12 15 27 chain 15925 chr18 80373285 + 65902965 65903233 L1PB2 3958 + 3482 3753 61123 4 0 1 32 44 37 61 1 0 54 0 7 50 0 3 22 chain 165017 chr18 80373285 + 65930573 65932841 L1P3 4156 + 3 2185 11409 244 15 14 24 20 2 12 43 5 15 2 1 80 10 0 24 2 0 32 0 1 238 19 17 268 7 8 210 13 17 541 0 1 96 0 2 65 29 6 259 chain 72847 chr18 80373285 + 65932841 65933752 L1PA7 6471 + 5546 6465 23235 3 0 2 70 1 0 515 0 1 123 0 3 32 28 31 139 chain 40933 chr18 80373285 + 65952127 65952634 L1PA8A 6298 + 5784 6291 34009 507 chain 3233 chr18 80373285 + 66048545 66048609 MER67D 511 + 265 330 97647 22 12 3 8 0 10 22 chain 62067 chr18 80373285 + 66163178 66163876 L1PA5 6144 + 5435 6135 25856 91 0 1 11 0 1 596 chain 26777 chr18 80373285 + 66214666 66215006 THE1A 353 + 2 343 46573 128 0 2 70 1 0 141 chain 64559 chr18 80373285 + 66223062 66223829 LTR17 781 + 1 768 25300 326 1 0 5 0 1 435 chain 85992 chr18 80373285 + 66273905 66274966 MER11B 1079 + 0 1079 20439 316 1 18 436 0 2 139 6 7 147 5 3 11 chain 42878 chr18 80373285 + 66290849 66291395 L1PA7 6471 + 5921 6470 32846 215 0 1 43 0 1 212 16 17 60 chain 261604 chr18 80373285 + 66293279 66297100 L1P2 5180 + 1478 4990 7923 115 1 0 236 1 0 26 1 4 348 0 2 70 0 1 28 23 11 73 10 14 771 3 1 5 2 0 1227 4 1 89 431 132 18 31 32 308 chain 431441 chr18 80373285 + 66372192 66377704 HERVL-int 5654 + 0 5528 4731 653 0 2 45 1 0 4 6 4 1547 0 1 233 1 2 227 6 5 132 0 1 520 0 1 498 7 8 137 5 4 110 1 18 90 26 17 528 0 1 114 4 7 80 0 2 5 36 36 193 18 18 285 chain 26821 chr18 80373285 + 66396122 66396489 LTR12D 1347 + 905 1347 46510 115 7 81 20 8 9 217 chain 125103 chr18 80373285 + 66414113 66415711 L1PA7 6471 + 4885 6469 14682 70 1 0 22 30 15 620 3 0 13 0 3 392 6 4 274 1 11 144 6 0 16 chain 15380 chr18 80373285 + 66478664 66478906 L1PREC2 3366 + 2627 2859 61814 29 7 8 47 4 0 41 2 0 54 1 0 43 1 0 5 3 0 5 chain 37744 chr18 80373285 + 66594600 66595014 L1PA3long 6157 + 5742 6156 36245 414 chain 18169 chr18 80373285 + 66597839 66598047 L1PA5 6144 + 5931 6139 58495 208 chain 35151 chr18 80373285 + 66639903 66640350 L1PA7 6471 + 6017 6469 37927 121 3 4 21 1 5 301 chain 540963 chr18 80373285 + 66715075 66721105 L1PA3long 6157 + 0 6156 1283 153 2 3 620 0 128 943 0 4 270 8 0 205 1 0 1637 0 2 598 0 1 1576 1 0 16 chain 78013 chr18 80373285 + 66739355 66740277 L1PA5 6144 + 5228 6143 22098 146 1 0 38 0 1 58 0 1 517 15 0 10 0 7 137 chain 22797 chr18 80373285 + 66767543 66767829 AluSx4 309 + 8 293 52666 255 6 5 25 chain 4004 chr18 80373285 + 66796914 66796959 THE1D-int 1627 + 303 348 91428 45 chain 3116 chr18 80373285 + 66854124 66854174 L1MD1 2063 + 353 396 98645 28 7 0 15 chain 72619 chr18 80373285 + 66854792 66855727 L1PA8 5853 + 4923 5853 23394 83 0 1 11 0 1 433 6 6 106 1 0 46 2 0 69 1 0 9 1 0 52 2 1 19 1 0 93 chain 17634 chr18 80373285 + 66859957 66860167 L1PA7 6471 + 6254 6464 59085 210 chain 27508 chr18 80373285 + 66866519 66866936 LTR12C 1709 + 0 459 45570 64 19 20 67 1 2 112 1 2 11 23 18 42 3 46 48 0 1 26 chain 52188 chr18 80373285 + 66894356 66894938 SVA_B 1603 + 1024 1603 28820 573 3 0 6 chain 14970 chr18 80373285 + 66897636 66897934 MER1B 344 + 6 344 62298 17 48 92 15 7 5 81 4 0 48 19 21 59 chain 18091 chr18 80373285 + 66905040 66905298 THE1B-int 1605 + 0 262 58569 117 0 1 4 2 1 43 12 13 62 0 3 18 chain 18743 chr18 80373285 + 66937283 66937487 L1PA3long 6157 + 5044 5248 57853 204 chain 74111 chr18 80373285 + 66953336 66954253 L1PA6 6164 + 5228 6162 23064 31 0 1 55 1 0 84 3 15 90 6 9 177 1 2 197 0 1 272 chain 3597 chr18 80373285 + 67081814 67081855 MER66C 541 - 364 405 94456 41 chain 160076 chr18 80373285 + 67090161 67091962 L1PA5 6144 + 4334 6141 11749 812 0 5 659 1 2 329 chain 27345 chr18 80373285 + 67097787 67098168 THE1C 375 + 0 375 45767 108 1 2 15 3 0 47 1 2 57 4 0 119 1 0 25 chain 91817 chr18 80373285 + 67227676 67228804 MER11A 1151 + 0 1144 19366 77 0 8 145 1 0 64 0 11 449 1 0 4 0 1 46 10 9 48 3 0 195 0 2 85 chain 17992 chr18 80373285 + 67273487 67273930 L1PA15 4387 + 3936 4366 58664 51 18 17 94 7 6 11 25 24 19 51 47 12 1 0 50 6 3 26 34 33 25 2 1 11 chain 22968 chr18 80373285 + 67584499 67584845 THE1D 372 + 0 353 52413 51 8 0 115 22 19 6 0 2 26 3 19 115 chain 173284 chr18 80373285 + 67603633 67605600 L1HS 6032 + 1 1972 10941 69 0 1 486 0 1 339 0 1 23 0 2 565 2 1 483 chain 23831 chr18 80373285 + 67644687 67645115 MER6 865 + 413 839 51052 6 0 4 19 101 100 127 6 0 21 0 1 148 chain 87142 chr18 80373285 + 67711154 67712396 L1PA8A 6298 + 5017 6273 20204 67 0 1 4 1 0 226 0 1 5 5 4 164 0 6 145 0 2 19 4 0 206 20 21 258 60 78 40 9 0 9 chain 38393 chr18 80373285 + 67721087 67721528 L1PA5 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68572521 L1PA10 4194 + 3652 4143 36712 145 13 12 4 0 1 290 2 3 9 3 0 27 chain 54474 chr18 80373285 + 68619534 68620323 L1PA10 4194 + 3387 4142 28059 143 0 1 77 0 5 232 0 2 54 5 8 157 47 10 6 5 0 22 2 3 4 1 0 5 3 0 26 chain 31242 chr18 80373285 + 68667759 68668284 L1PA14 3548 + 2953 3456 40936 47 9 5 105 2 0 4 2 0 17 2 0 6 1 0 25 4 7 50 1 0 50 3 0 63 17 12 35 4 2 12 1 0 5 22 20 38 chain 8668 chr18 80373285 + 68683746 68684056 MER44A 345 + 0 333 73298 20 104 127 30 5 5 57 57 57 37 chain 98370 chr18 80373285 + 68749804 68750961 L1PA5 6144 + 5007 6142 18500 287 1 0 91 12 1 290 6 0 149 0 1 65 1 0 244 4 0 7 chain 7444 chr18 80373285 + 68754864 68755032 MLT1A0 366 + 172 347 76261 16 69 76 83 chain 9916 chr18 80373285 + 68858933 68859040 U6 107 + 0 107 70582 107 chain 130646 chr18 80373285 + 68859040 68860488 L1PA2 6032 + 4607 6032 13960 1412 23 0 13 chain 20882 chr18 80373285 + 68870059 68870357 L1PA8 5853 + 5558 5853 55274 4 1 0 47 3 1 71 1 0 7 1 0 9 3 0 26 12 18 19 1 0 93 chain 14403 chr18 80373285 + 68994601 68994817 THE1D 372 + 132 360 63028 33 22 35 25 1 0 135 chain 20411 chr18 80373285 + 69189839 69190213 THE1C 375 + 0 373 55873 33 10 11 18 23 24 52 1 5 32 0 2 8 41 33 132 1 0 23 chain 102759 chr18 80373285 + 69255000 69256158 L1HS 6032 + 1141 2293 17980 351 6 0 801 chain 27666 chr18 80373285 + 69306803 69307190 L1PA8 5853 + 5454 5853 45375 110 1 0 10 0 19 14 5 3 70 1 0 8 5 4 48 2 1 19 1 0 93 chain 11468 chr18 80373285 + 69328519 69328785 L1PA13 3608 + 92 337 67803 17 6 4 23 2 0 3 1 0 24 1 0 14 3 0 15 0 3 6 31 17 45 19 20 8 2 0 46 chain 25468 chr18 80373285 + 69341599 69341887 L1PA4 6152 + 5863 6151 48523 288 chain 69541 chr18 80373285 + 69347986 69348842 L1PA7 6471 + 5621 6464 24111 82 0 1 215 0 1 160 16 4 375 3 0 5 chain 117828 chr18 80373285 + 69359956 69361779 THE1B-int 1605 + 0 1601 15913 15 0 2 305 0 5 103 1 26 23 0 1 488 1 0 99 5 6 98 11 14 30 6 7 4 1 0 67 1 0 9 258 0 283 2 0 8 0 3 5 chain 511003 chr18 80373285 + 69449559 69455072 L1PA2 6032 + 513 6032 2715 1685 1 0 1192 0 2 263 0 1 578 0 4 1794 chain 23387 chr18 80373285 + 69546002 69546291 AluSp 311 + 7 296 51786 289 chain 99449 chr18 80373285 + 69562524 69563629 L1PA4 6152 + 4864 5969 18359 1105 chain 35037 chr18 80373285 + 69568621 69569118 MER1A 529 + 41 521 37995 39 20 17 13 4 0 347 12 2 62 chain 47913 chr18 80373285 + 69748008 69748650 L1P3 4156 + 2565 3234 30325 64 0 3 152 0 1 125 0 4 34 18 31 37 0 2 75 0 4 137 chain 29498 chr18 80373285 + 69773809 69774477 L1PB1 5432 + 4861 5404 42612 72 0 1 61 4 2 40 23 27 33 175 70 53 2 1 16 1 0 43 1 0 16 2 0 6 17 6 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 chain 5459 chr18 80373285 + 69783352 69783442 MER33 330 + 139 237 83409 6 0 4 58 10 14 16 chain 17586 chr18 80373285 + 69790190 69790430 L1PA8 5853 + 5615 5853 59137 63 2 1 9 1 0 52 2 1 14 1 0 4 0 2 92 chain 22234 chr18 80373285 + 69939936 69940295 THE1C 375 + 0 360 53500 87 7 8 84 37 35 10 6 9 117 1 0 10 chain 110417 chr18 80373285 + 69940326 69941835 THE1C-int 1605 + 15 1600 17017 95 0 54 165 0 6 110 0 7 21 2 1 42 0 2 134 3 11 15 25 26 27 5 0 19 0 9 181 0 1 145 12 8 79 1 0 109 1 0 211 1 0 8 2 3 96 chain 267674 chr18 80373285 + 69963593 69966606 L1PA5 6144 + 3135 6139 7772 374 1 0 810 0 1 892 1 0 8 0 1 73 2 1 693 0 1 131 9 0 19 chain 3531 chr18 80373285 + 69988964 69989004 L1MB1 2102 + 140 180 95008 40 chain 335664 chr18 80373285 + 70006963 70011426 L1P3 4156 + 0 4139 6133 23 0 2 226 1 0 68 2 1 81 1 3 240 4 5 421 0 1 137 9 13 397 1 0 138 6 4 90 2 1 37 7 5 265 317 0 404 0 2 66 8 1 1366 1 0 111 2 0 6 2 1 24 chain 78054 chr18 80373285 + 70050065 70051083 L1PA8 5853 + 4833 5853 22088 17 0 4 156 2 0 74 0 2 134 1 0 226 0 1 74 1 0 19 0 1 23 1 0 44 4 2 70 0 4 9 7 6 41 2 1 19 2 1 92 chain 31562 chr18 80373285 + 70080705 70081310 L1PB1 5432 + 4887 5420 40693 4 0 1 47 8 7 148 61 19 25 1 0 9 1 0 10 8 4 6 2 0 53 3 2 15 1 0 40 6 5 14 14 1 8 0 1 15 0 1 5 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 24849 chr18 80373285 + 70098151 70098468 L1PREC2 3366 + 1014 1331 49519 176 0 1 119 1 0 21 chain 72126 chr18 80373285 + 70102897 70103775 SVA_A 1864 + 1020 1864 23504 123 1 0 99 3 0 75 42 14 520 2 0 13 chain 219168 chr18 80373285 + 70110266 70113217 L1P3 4156 + 0 4033 9061 232 51 58 33 1 0 86 3 0 61 1 0 98 3 0 146 37 42 444 7 11 38 32 438 288 11 9 129 0 1 457 2 1 66 10 1 665 13 692 37 chain 30632 chr18 80373285 + 70141416 70141778 L1PA6 6164 + 5798 6161 41442 257 0 3 96 2 0 7 chain 88184 chr18 80373285 + 70155715 70156769 MER11C 1089 + 0 1063 20009 249 0 1 67 0 4 369 0 4 43 0 1 31 6 5 289 chain 7496 chr18 80373285 + 70212752 70212847 L1MB5 1630 + 680 775 76138 95 chain 301734 chr18 80373285 + 70236425 70240144 L1P3 4156 + 3 3743 6784 187 0 1 37 25 24 70 0 14 69 13 0 452 0 1 348 1 5 141 2 1 742 5 6 375 0 1 159 1 2 60 2 1 184 0 4 607 2 0 187 2 14 48 chain 53256 chr18 80373285 + 70242392 70243016 L1PA7 6471 + 5844 6469 28481 607 0 1 17 chain 24177 chr18 80373285 + 70262422 70262783 THE1B 368 + 1 368 50529 106 0 1 61 1 0 21 7 10 14 8 12 4 1 0 9 2 1 28 1 2 98 chain 53935 chr18 80373285 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1175 1237 103116 13 14 0 19 23 14 16 chain 525768 chr18 80373285 + 70714323 70720446 L1PA5 6144 + 3 6144 2012 117 0 14 106 17 10 562 0 3 184 0 1 258 0 1 575 0 5 96 1 0 1242 1 0 331 19 16 1480 0 1 286 0 4 590 1 0 87 21 26 6 2 0 128 2 1 11 chain 529647 chr18 80373285 + 70735876 70741976 L1PA5 6144 + 0 6142 1843 95 1 2 96 1 19 1674 0 1 44 0 1 683 3 4 538 0 2 350 1 0 175 0 2 970 1 2 635 1 0 24 2 3 528 4 18 130 6 8 138 chain 3429 chr18 80373285 + 70762616 70762667 MADE1 96 + 29 96 95828 13 1 17 37 chain 78203 chr18 80373285 + 70766283 70767298 L1PA10 4194 + 3068 4054 22051 55 10 1 266 0 1 87 25 0 336 0 4 236 chain 402963 chr18 80373285 + 70795009 70799902 L1PA5 6144 + 766 5380 5119 382 0 3 84 1 0 109 0 1 616 4 0 1013 1 2 200 1 0 325 0 1 432 314 13 373 0 1 22 0 8 540 1 5 108 0 1 270 1 5 11 0 4 85 chain 26315 chr18 80373285 + 70798186 70798491 L1PA5 6144 + 5825 6138 47247 169 0 8 136 chain 18339 chr18 80373285 + 70805687 70806030 THE1B 368 + 0 347 58313 108 5 6 55 2 0 6 48 55 10 1 0 66 24 23 18 chain 30121 chr18 80373285 + 70816754 70817084 L1PA2 6032 + 5702 6032 41924 330 chain 39620 chr18 80373285 + 70881717 70882245 MLT2A2 560 + 2 560 34946 308 1 19 71 4 15 27 2 1 47 0 1 31 0 1 37 chain 16172 chr18 80373285 + 70889004 70889199 THE1D-int 1627 + 1424 1619 60785 195 chain 120330 chr18 80373285 + 70924040 70925676 L1PA10 4194 + 2520 4150 15475 29 0 1 7 1 0 53 14 12 7 0 1 18 0 1 7 2 3 297 1 0 100 5 6 383 4 6 237 1 4 337 25 16 37 12 11 11 0 1 11 4 1 33 chain 12759 chr18 80373285 + 70936503 70936692 THE1D 372 + 194 372 65504 81 23 8 16 0 4 69 chain 7385 chr18 80373285 + 70985340 70985443 THE1D 372 + 268 372 76435 37 7 8 59 chain 86339 chr18 80373285 + 70989782 70990732 L1PA3long 6157 + 5206 6157 20359 791 0 1 159 chain 14794 chr18 80373285 + 71125404 71125581 L1PA6 6164 + 5979 6156 62538 177 chain 7679 chr18 80373285 + 71317907 71318110 L1PB1 5432 + 5240 5422 75685 39 4 3 14 1 0 4 3 0 11 8 0 16 33 28 17 1 0 13 7 6 13 1 0 18 chain 2434 chr18 80373285 + 71337873 71337909 MER33 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71650864 MLT2B2 565 + 0 151 73767 80 42 37 34 chain 109560 chr18 80373285 + 71656639 71657805 L1HS 6032 + 3839 5005 17115 1166 chain 14915 chr18 80373285 + 71726596 71726926 L1PB1 5432 + 5114 5416 62371 24 1 0 4 5 4 10 9 5 7 2 0 52 2 1 12 6 5 43 37 27 19 2 0 4 1 0 17 2 0 22 1 0 21 1 0 13 1 0 12 chain 6511 chr18 80373285 + 71749188 71749284 MLT1B 390 + 280 375 79306 32 7 6 57 chain 181279 chr18 80373285 + 71763858 71766808 HERVL-int 5654 + 3025 5653 10535 370 0 1 570 0 2 106 19 19 46 12 13 102 6 7 148 39 20 50 527 232 81 0 1 166 0 1 262 25 7 51 0 1 51 0 1 119 0 1 200 chain 243292 chr18 80373285 + 71790930 71793614 L1PA3long 6157 + 3466 6157 8396 330 1 8 2353 chain 24893 chr18 80373285 + 71847353 71847718 THE1C-int 1605 + 1205 1585 49450 88 16 17 30 4 5 23 0 6 100 5 12 99 chain 27968 chr18 80373285 + 71916394 71916745 HSMAR1 1287 + 934 1287 44922 280 0 1 19 0 1 52 chain 75172 chr18 80373285 + 71955925 71956872 L1PA7 6471 + 5536 6461 22804 87 1 4 479 33 8 347 chain 13074 chr18 80373285 + 71992941 71993089 L1PA6 6164 + 6014 6162 64976 148 chain 66499 chr18 80373285 + 72124229 72125022 L1PA6 6164 + 5366 6156 24823 32 3 0 758 chain 64638 chr18 80373285 + 72135559 72136268 L1PA3long 6157 + 3458 4167 25287 709 chain 15361 chr18 80373285 + 72158625 72158834 L1MA5 2750 + 2192 2399 61837 91 11 9 107 chain 74533 chr18 80373285 + 72192447 72193280 L1PA3long 6157 + 5308 6157 22951 22 0 17 545 1 0 265 chain 9675 chr18 80373285 + 72209598 72209822 LTR12C 1709 + 932 1203 71110 49 78 0 51 4 129 42 chain 25671 chr18 80373285 + 72273779 72274109 THE1A 353 + 24 353 48214 86 1 0 92 2 1 79 0 1 70 chain 227760 chr18 80373285 + 72276319 72280248 L1PA7 6471 + 3629 6468 8818 747 11 11 212 7 9 66 0 2 271 0 1 349 0 1 4 1098 4 315 1 0 376 2 0 461 0 1 9 chain 4545 chr18 80373285 + 72283360 72283416 MLT2B3 573 + 45 101 88089 56 chain 10008 chr18 80373285 + 72387966 72388084 L1HS 6032 + 5911 6031 70406 5 0 2 113 chain 24853 chr18 80373285 + 72398934 72399223 L1PA5 6144 + 5853 6142 49513 289 chain 26191 chr18 80373285 + 72420690 72421050 THE1C 375 + 0 364 47439 194 17 20 98 0 2 36 1 0 14 chain 24259 chr18 80373285 + 72443330 72443683 L1PA8 5853 + 5502 5853 50405 61 3 2 44 2 3 66 2 1 11 1 0 50 2 1 19 1 0 6 0 2 85 chain 28880 chr18 80373285 + 72459441 72459780 AluYb8 318 + 0 314 43514 132 2 0 129 23 0 53 chain 25998 chr18 80373285 + 72479687 72480055 THE1B 368 + 0 368 47718 12 3 1 27 0 5 127 3 2 20 6 5 95 1 0 74 chain 32434 chr18 80373285 + 72510689 72511129 HERVL-int 5654 + 4777 5223 40008 39 24 29 94 0 1 283 chain 38582 chr18 80373285 + 72593837 72594292 L1PA7 6471 + 6014 6470 35655 225 0 1 230 chain 3874 chr18 80373285 + 72684103 72684148 MLT2B4 540 + 491 536 92326 45 chain 168556 chr18 80373285 + 72693142 72695838 MER61-int 3695 + 1 2340 11180 27 7 0 18 1 0 53 1 2 48 0 1 42 38 0 80 1 0 54 13 6 41 326 0 39 15 1 212 0 2 15 2 1 154 0 4 41 23 21 140 5 16 203 0 3 72 0 13 114 0 1 139 0 4 128 6 5 79 0 1 65 2 0 285 0 1 101 0 1 106 chain 24283 chr18 80373285 + 72718553 72718890 MER4E1 777 + 421 770 50363 121 1 9 164 23 27 28 chain 58927 chr18 80373285 + 72920988 72921829 L1PA8 5853 + 5011 5853 26684 346 5 6 195 15 14 38 2 0 51 24 35 6 6 0 38 2 1 18 2 1 93 chain 26464 chr18 80373285 + 72946978 72947300 L1PA7 6471 + 6150 6470 47032 147 3 1 172 chain 64364 chr18 80373285 + 72976335 72977076 L1PA2 6032 + 5313 6030 25336 386 0 3 220 27 0 108 chain 449403 chr18 80373285 + 73016480 73021840 L1PA5 6144 + 5 5514 4402 115 1 35 223 7 1 113 2 0 27 0 8 248 2 1 348 24 56 1576 0 1 94 1 0 504 0 2 163 3 4 345 1 14 1256 0 20 135 1 0 79 0 2 7 8 55 77 chain 86111 chr18 80373285 + 73071210 73072302 MER11A 1151 + 34 1150 20413 74 0 2 66 8 0 23 2 0 25 5 4 64 8 4 377 6 9 126 0 1 17 0 33 291 chain 72005 chr18 80373285 + 73166471 73167243 L1PA3long 6157 + 4919 5691 23537 772 chain 92239 chr18 80373285 + 73209352 73210557 L1PA7 6471 + 4686 5867 19306 126 32 5 205 0 1 155 9 8 11 0 5 419 1 0 81 4 3 162 chain 13510 chr18 80373285 + 73293328 73293494 L1PA5 6144 + 5979 6144 64300 153 2 1 11 chain 29211 chr18 80373285 + 73324614 73325037 LTR7Y 441 + 0 431 43030 103 9 0 57 56 72 91 0 1 107 chain 291987 chr18 80373285 + 73325047 73328677 HERVH-int 3825 + 0 3825 7074 212 0 11 300 85 18 29 2 0 10 1 0 24 7 56 38 44 1 44 6 7 13 0 2 14 5 10 434 15 0 158 0 10 63 0 2 225 8 35 383 1 2 1019 8 218 254 3 8 225 chain 28448 chr18 80373285 + 73329930 73330362 LTR7Y 441 + 0 441 44195 103 9 0 57 68 84 99 0 2 96 chain 82226 chr18 80373285 + 73373792 73375315 L1PBa 3878 + 2050 3293 21196 110 8 9 54 9 7 242 315 7 196 4 25 15 6 7 312 2 0 5 0 2 14 16 18 66 1 5 62 33 34 53 chain 65116 chr18 80373285 + 73377228 73377965 L1PA4 6152 + 5404 6143 25162 412 1 2 220 0 1 104 chain 15109 chr18 80373285 + 73390990 73391163 L1PA5 6144 + 5962 6135 62141 173 chain 6991 chr18 80373285 + 73419399 73419524 L1MA3 4352 + 4213 4332 77637 47 2 0 22 1 0 6 1 0 19 8 7 14 1 0 4 chain 144302 chr18 80373285 + 73444827 73446414 L1PA3long 6157 + 2402 3985 12750 765 4 0 818 chain 64165 chr18 80373285 + 73515672 73516550 HERVL-int 5654 + 1 5654 25377 285 1 0 41 0 4763 135 7 4 98 0 13 24 0 3 287 chain 13228 chr18 80373285 + 73524282 73524544 L1PB1 5432 + 5182 5422 64731 38 2 1 15 1 0 43 2 1 16 1 0 4 2 0 13 9 0 9 7 5 5 1 0 14 2 0 24 1 0 34 1 0 18 chain 5215 chr18 80373285 + 73528198 73528260 L1PA8A 6298 + 5841 5903 84609 62 chain 25453 chr18 80373285 + 73547526 73547903 THE1C 375 + 0 375 48552 185 1 2 25 29 25 47 4 5 86 chain 162179 chr18 80373285 + 73629283 73631070 L1PA3long 6157 + 3229 5024 11600 667 0 2 48 0 1 697 0 5 375 chain 37651 chr18 80373285 + 73670842 73671333 L1PA8 5853 + 5367 5853 36305 11 0 1 110 0 1 76 1 0 42 2 0 71 1 0 8 12 11 44 1 0 18 1 0 93 chain 4265 chr18 80373285 + 73706667 73706716 L1MC1 2226 + 1276 1325 89732 49 chain 24046 chr18 80373285 + 73800964 73801331 THE1C 375 + 0 375 50737 108 13 12 27 0 1 24 41 50 128 1 0 25 chain 3849 chr18 80373285 + 73820073 73820121 MADE1 96 + 48 96 92504 48 chain 81424 chr18 80373285 + 73821812 73822727 L1PA4 6152 + 4431 5346 21351 915 chain 16703 chr18 80373285 + 73848283 73848509 MER30 238 + 0 238 60148 109 5 20 61 3 0 48 chain 4390 chr18 80373285 + 73988859 73988915 MER72B 755 + 699 755 88946 56 chain 70147 chr18 80373285 + 74044204 74044982 L1PA3long 6157 + 5379 6157 23963 778 chain 405513 chr18 80373285 + 74052958 74059369 L1PA4 6152 + 9 6143 5086 111 8 22 87 356 161 15 109 91 22 163 78 11 13 13 90 102 77 25 6 23 14 1 4 6 3 0 57 96 71 32 46 45 32 169 161 318 0 3 36 1 0 102 2 0 59 1 28 247 12 11 324 0 3 248 0 8 122 6 8 390 2 1 5 0 1 6 2 0 264 0 3 71 0 1 173 0 1 4 9 7 364 9 9 65 0 1 205 1 9 311 22 21 117 0 1 152 7 7 1180 chain 371614 chr18 80373285 + 74097834 74103094 L1PB1 5432 + 22 5422 5627 117 10 1 15 7 8 228 7 11 150 0 1 77 3 6 52 4 3 202 4 5 118 312 0 60 0 4 258 0 1 14 1 2 49 0 9 67 0 4 45 0 3 142 2 3 596 6 7 13 0 1 283 0 5 246 3 0 12 1 2 44 0 3 272 2 1 166 0 446 276 1 0 189 0 1 265 0 1 6 1 6 81 4 5 17 0 1 82 3 4 395 15 11 17 0 1 6 1 0 9 1 0 9 2 0 3 2 0 9 2 0 52 3 2 14 1 0 31 11 13 16 3 0 6 16 6 19 2 0 5 1 0 15 7 5 18 1 0 21 1 0 13 1 0 14 1 0 4 chain 77526 chr18 80373285 + 74109083 74109989 L1PA6 6164 + 5252 6162 22192 63 1 5 87 0 3 746 3 0 6 chain 32024 chr18 80373285 + 74205597 74206054 MER4A1 472 + 0 460 40332 49 0 2 137 2 1 51 1 2 50 8 7 92 12 14 55 chain 45075 chr18 80373285 + 74238626 74239272 L1PB2 3958 + 3200 3835 31542 61 0 1 43 2 0 55 2 1 76 5 3 11 4 0 94 1 0 72 1 0 9 6 9 46 1 0 74 2 0 20 1 0 6 0 1 4 1 0 49 chain 167050 chr18 80373285 + 74293673 74295898 HERVH-int 3825 + 778 3168 11266 364 42 45 233 1 0 12 17 15 137 18 19 4 1 0 46 0 4 34 0 27 171 0 1 182 18 23 48 0 4 524 0 119 12 0 3 211 1 0 76 0 3 73 chain 52110 chr18 80373285 + 74326918 74327579 PABL_A 660 + 0 660 28838 62 5 0 6 0 5 54 1 0 151 0 1 282 9 8 91 chain 28300 chr18 80373285 + 74339497 74339874 L1MA8 2339 + 173 550 44415 63 1 0 242 2 0 7 0 1 9 0 4 23 1 0 23 1 0 5 chain 44017 chr18 80373285 + 74420351 74420900 MLT2A2 560 + 0 560 32118 399 3 14 147 chain 31181 chr18 80373285 + 74548574 74548981 MSTA-int 1630 + 0 416 40994 157 0 1 71 0 5 91 0 1 56 3 5 29 chain 38302 chr18 80373285 + 74549037 74549533 MER75 514 + 0 513 35840 173 1 0 137 0 9 10 0 10 159 1 0 15 chain 119477 chr18 80373285 + 74810681 74812040 L1PA3long 6157 + 4826 6157 15614 296 23 0 375 0 1 504 8 1 136 0 1 17 chain 198127 chr18 80373285 + 74823087 74825515 L1PA7 6471 + 2182 4632 9769 83 1 0 375 0 1 860 1 0 121 0 1 386 0 2 282 11 31 308 chain 2917 chr18 80373285 + 74840428 74840464 L2a 937 + 118 154 100688 36 chain 77807 chr18 80373285 + 74998532 74999361 L1HS 6032 + 5203 6032 22143 829 chain 23397 chr18 80373285 + 75073877 75074246 THE1D 372 + 12 372 51763 56 10 0 4 13 0 94 27 28 117 0 13 48 chain 23978 chr18 80373285 + 75352247 75352594 THE1C 375 + 0 335 50828 61 31 24 98 1 0 100 9 5 47 chain 24763 chr18 80373285 + 75354276 75354610 THE1C 375 + 0 335 49641 176 18 19 140 chain 19682 chr18 80373285 + 75437006 75437288 L1MA2 4263 + 3827 4100 56807 129 11 9 93 7 0 42 chain 6535 chr18 80373285 + 75447221 75447328 MLT1A0 366 + 31 139 79217 22 16 17 69 chain 3309 chr18 80373285 + 75457906 75457946 L1ME2 1516 + 1031 1071 96928 40 chain 90258 chr18 80373285 + 75512206 75513453 L1PBa 3878 + 1046 2287 19635 78 4 0 10 0 20 41 1 2 40 9 13 102 14 0 347 0 1 222 21 14 15 14 7 329 chain 32920 chr18 80373285 + 75547833 75548300 L1PA8 5853 + 5404 5853 39574 118 12 1 41 1 0 45 2 0 69 17 15 47 2 1 22 1 0 90 chain 97039 chr18 80373285 + 75604473 75605626 L1PA7 6471 + 5305 6463 18654 294 0 4 18 4 0 79 0 2 435 0 3 323 chain 3471 chr18 80373285 + 75622696 75622734 MLT1B 390 + 105 143 95447 38 chain 6696 chr18 80373285 + 75634647 75634800 MSTA 426 + 28 204 78656 26 0 1 8 50 74 62 2 0 5 chain 24570 chr18 80373285 + 75735766 75736129 THE1B 368 + 2 361 49903 42 0 15 44 1 0 63 9 8 22 4 0 3 13 0 162 chain 23656 chr18 80373285 + 75737763 75738123 THE1B 368 + 0 367 51345 39 6 21 116 1 0 110 33 26 55 chain 11334 chr18 80373285 + 75748793 75748913 L1PA5 6144 + 6012 6132 68027 120 chain 29673 chr18 80373285 + 75838187 75838566 MLT2A2 560 + 0 379 42407 168 12 12 199 chain 290888 chr18 80373285 + 75838626 75842381 HERVL-int 5654 + 1886 5654 7105 68 0 1 142 0 1 107 4 21 294 5 0 325 0 1 217 0 1 313 1 5 462 9 5 244 0 1 107 0 1 250 1 10 26 17 21 210 0 1 90 2 1 156 10 6 8 9 0 444 8 4 200 9 8 17 chain 567356 chr18 80373285 + 75846851 75852883 L1HS 6032 + 0 6032 32 6032 chain 4752 chr18 80373285 + 75868424 75868480 MLT1C 463 + 63 119 86953 56 chain 17436 chr18 80373285 + 75876724 75877049 THE1B 368 + 0 368 59312 44 0 15 47 19 31 35 2 1 25 42 52 49 1 0 7 5 13 49 chain 10770 chr18 80373285 + 75966325 75966455 MER50 708 + 565 695 68918 130 chain 17244 chr18 80373285 + 75976012 75976258 L1PA8 5853 + 5619 5853 59532 38 8 0 22 1 0 7 2 4 5 3 0 45 2 1 19 1 0 93 chain 8260 chr18 80373285 + 75989942 75990033 L1PA5 6144 - 448 539 74265 91 chain 32445 chr18 80373285 + 75990033 75990397 L1PA5 6144 + 5778 6142 39995 364 chain 60629 chr18 80373285 + 76001273 76001924 SVA_D 2077 + 1425 2077 26193 20 1 0 186 0 2 444 chain 16886 chr18 80373285 + 76010406 76010651 L1PA16 3655 + 3331 3575 59928 70 24 23 151 chain 24552 chr18 80373285 + 76012572 76012958 THE1C 375 + 0 375 49941 27 1 0 20 10 7 10 35 34 83 7 0 132 0 1 61 chain 18421 chr18 80373285 + 76036306 76036525 L1PA7 6471 + 6254 6470 58205 205 3 0 11 chain 6934 chr18 80373285 + 76108111 76108254 Tigger3a 397 + 145 327 77835 70 44 83 29 chain 48398 chr18 80373285 + 76248791 76249430 L1PA8 5853 + 5217 5853 30151 58 1 3 286 1 0 44 2 0 70 2 1 7 1 0 11 5 7 36 2 1 19 1 0 93 chain 51066 chr18 80373285 + 76298489 76299052 L1PA4 6152 + 5573 6136 29202 563 chain 9465 chr18 80373285 + 76401080 76401212 MER85 139 + 0 139 71571 97 1 13 6 5 0 23 chain 6902 chr18 80373285 + 76539721 76539816 MLT2D 439 + 44 136 77944 18 3 0 74 chain 12709 chr18 80373285 + 76594506 76594686 MER30 238 + 46 238 65605 51 12 27 75 3 0 39 chain 127760 chr18 80373285 + 76644895 76646468 SVA_D 2077 + 6 2077 14316 20 7 0 467 116 0 274 3 41 62 0 583 624 chain 3109 chr18 80373285 + 76645455 76645505 SVA_D 2077 + 599 649 65198 50 chain 4523 chr18 80373285 + 76665194 76665257 L1MDa 1598 + 1374 1438 88194 38 1 0 5 0 2 19 chain 40417 chr18 80373285 + 76671902 76672526 MER41A 554 + 0 554 34370 165 1 0 19 0 4 10 2 3 30 3 0 23 1 5 59 0 1 4 1 0 95 82 7 129 chain 27529 chr18 80373285 + 76724964 76725306 L1PA7 6471 + 6122 6469 45551 193 0 1 43 0 6 92 3 1 11 chain 72921 chr18 80373285 + 76746191 76747350 L1PB1 5432 + 4342 5423 23330 287 0 1 84 1 0 111 3 4 68 0 1 205 1 2 11 61 10 12 1 0 8 1 0 11 16 10 53 2 1 11 7 6 43 1 0 15 1 0 6 20 10 14 3 1 5 1 0 14 2 0 19 8 7 19 1 0 13 1 0 19 chain 140361 chr18 80373285 + 76777064 76778726 LTR12C 1709 + 0 1709 13071 43 0 2 391 0 1 402 0 41 231 1 0 6 2 0 107 0 4 212 0 1 74 1 2 192 chain 38567 chr18 80373285 + 76791342 76791909 LTR61 567 + 0 567 35665 25 0 1 27 4 15 118 9 1 35 3 0 73 1 0 40 5 6 21 5 0 26 6 9 16 0 1 153 chain 25981 chr18 80373285 + 76946078 76946432 THE1B 368 + 0 368 47747 44 0 15 109 1 0 29 3 0 7 1 5 84 1 0 75 chain 5553 chr18 80373285 + 77019271 77019369 MLT1C 463 + 66 161 83020 21 1 2 36 6 0 21 1 3 12 chain 15134 chr18 80373285 + 77024142 77024358 MER30 238 + 0 236 62120 99 2 0 5 5 24 24 0 6 41 3 0 37 chain 81461 chr18 80373285 + 77040235 77041138 L1PA4 6152 + 4444 5351 21339 860 0 4 43 chain 121871 chr18 80373285 + 77142561 77144105 THE1B-int 1605 + 0 1583 15206 430 1 26 288 0 9 11 9 0 47 5 6 79 0 1 9 0 10 388 1 2 230 0 1 46 chain 6930 chr18 80373285 + 77161861 77161949 MLT2A2 560 + 473 560 77849 32 1 0 55 chain 34355 chr18 80373285 + 77230144 77230768 L1PB1 5432 + 4844 5422 38455 66 0 1 178 23 16 9 1 0 28 22 17 9 2 0 52 3 2 15 1 0 42 2 1 16 1 0 6 26 7 18 2 0 5 1 0 14 2 0 24 1 0 20 3 1 13 1 0 18 chain 9516 chr18 80373285 + 77294206 77294358 MSTA 426 + 15 198 71440 83 24 55 45 chain 12533 chr18 80373285 + 77313943 77314084 MER57-int 2662 + 2028 2169 65926 141 chain 76198 chr18 80373285 + 77430025 77430985 L1PA7 6471 + 5525 6470 22513 32 20 1 62 5 8 70 0 2 287 0 3 319 1 0 154 3 0 7 chain 7591 chr18 80373285 + 77448739 77448832 Tigger1 2417 + 1376 1469 75887 93 chain 88844 chr18 80373285 + 77475970 77477284 L1PB1 5432 + 4129 5391 19883 77 1 0 404 3 5 9 1 2 17 0 1 284 3 0 57 0 1 111 42 18 23 10 8 12 16 10 52 2 1 16 1 0 44 1 0 11 28 16 19 11 8 11 2 0 12 13 12 21 chain 43299 chr18 80373285 + 77488919 77489635 L1PA15 4387 + 3635 4353 32572 17 0 3 6 1 0 22 1 6 124 2 0 77 2 0 42 1 0 172 2 1 22 0 8 21 1 7 21 2 1 18 17 14 39 28 26 32 3 1 11 8 3 24 chain 26520 chr18 80373285 + 77510458 77510780 L1PA6 6164 + 5835 6159 46948 117 0 3 52 1 0 152 chain 25577 chr18 80373285 + 77526123 77526477 THE1A 353 + 0 353 48354 98 13 12 123 0 3 5 3 0 112 chain 506667 chr18 80373285 + 77577755 77583872 L1PA6 6164 + 0 6156 2907 113 4 0 238 0 2 95 1 2 117 1 0 268 9 16 356 1 0 393 0 1 299 1 0 403 7 12 13 9 0 640 1 9 219 5 6 320 1 3 178 1 3 246 0 1 610 0 16 504 7 7 226 0 8 125 0 1 552 1 2 9 1 0 143 chain 17405 chr18 80373285 + 77586469 77586824 THE1B 368 + 2 368 59344 109 0 3 6 16 15 42 100 109 82 chain 508304 chr18 80373285 + 77637120 77643251 L1PA6 6164 + 0 6160 2831 315 3 24 8 21 0 112 12 20 30 2 1 177 1 0 40 2 1 59 0 17 111 0 1 147 1 0 1262 0 1 14 0 1 849 0 2 360 20 5 711 0 1 925 0 1 100 0 1 19 1 0 442 0 6 350 0 10 37 chain 9301 chr18 80373285 + 77789758 77789862 L1PA5 6144 + 5852 5956 71909 104 chain 27906 chr18 80373285 + 77797311 77797606 AluYd8 298 + 0 295 45028 295 chain 11336 chr18 80373285 + 77821813 77821998 MSTB 430 + 227 413 68025 16 34 35 135 chain 68189 chr18 80373285 + 77848210 77848977 L1PA4 6152 + 5380 6152 24407 761 0 5 6 chain 18381 chr18 80373285 + 77933614 77933958 L1PB1 5432 + 4976 5410 58262 106 0 3 6 25 135 10 1 0 45 1 0 15 14 1 30 2 0 4 1 0 12 6 4 23 1 0 21 1 0 13 1 0 6 chain 3593 chr18 80373285 + 77974101 77974145 L1MC3 1789 + 815 859 94485 44 chain 13182 chr18 80373285 + 77987390 77987575 L1PA8 5853 + 5679 5853 64807 7 1 0 53 11 2 19 1 0 93 chain 3803 chr18 80373285 + 78057121 78057165 MLT1A1-int 1737 + 30 74 92830 44 chain 25122 chr18 80373285 + 78103201 78103547 THE1B 368 + 0 368 49087 40 0 15 113 1 0 28 5 13 84 1 0 17 0 1 57 chain 17507 chr18 80373285 + 78239757 78239957 L1PA5 6144 + 5942 6142 59237 200 chain 37475 chr18 80373285 + 78358961 78359537 L1PA11 4918 + 4004 4567 36419 312 12 9 63 13 19 67 2 0 13 3 2 18 44 32 15 1 0 13 chain 27984 chr18 80373285 + 78381238 78381591 THE1D 372 + 0 366 44894 65 0 10 115 0 3 173 chain 64951 chr18 80373285 + 78442420 78443304 L1PA8 5853 + 4975 5853 25200 30 0 1 4 2 0 298 1 2 254 2 1 45 2 0 68 1 0 10 2 1 71 2 1 92 chain 27690 chr18 80373285 + 78453135 78453425 AluYb8 318 + 28 318 45331 290 chain 38451 chr18 80373285 + 78462753 78463243 L1PA8 5853 + 4952 5441 35756 53 5 4 63 2 0 10 0 2 357 chain 25251 chr18 80373285 + 78473033 78473389 THE1B 368 + 0 368 48871 44 7 22 103 1 0 19 11 9 171 chain 28084 chr18 80373285 + 78490648 78491005 L1PA6 6164 + 5781 6140 44739 50 0 1 172 17 18 118 chain 30862 chr18 80373285 + 78802672 78803027 L1PA8 5853 + 5202 5557 41257 355 chain 3402 chr18 80373285 + 79081594 79081630 L1P3 4156 + 3461 3497 96042 36 chain 7287 chr18 80373285 + 79089069 79089252 L1PB1 5432 + 5264 5427 76710 17 1 0 10 19 6 30 2 0 5 20 17 21 1 0 22 0 3 9 1 0 18 2 0 5 chain 58610 chr18 80373285 + 79097992 79098633 L1PA2 6032 + 4621 5269 26785 225 0 7 416 chain 183234 chr18 80373285 + 79114973 79116935 L1HS 6032 + 4070 6032 10425 1962 chain 24784 chr18 80373285 + 79141036 79141361 THE1C 375 + 7 333 49613 120 0 3 52 1 2 63 8 5 81 chain 114336 chr18 80373285 + 79230199 79231773 L1PB1 5432 + 3447 5106 16500 205 14 13 59 13 10 197 0 1 30 6 5 67 5 63 175 0 13 160 0 6 153 18 17 184 28 36 143 0 3 27 0 2 90 chain 2719 chr18 80373285 + 79259954 79259998 MLT1C-int 1263 + 457 497 102194 34 4 0 6 chain 57098 chr18 80373285 + 79600980 79601738 MER4E 760 + 2 760 27232 15 0 1 53 0 1 37 2 0 53 22 16 84 0 1 62 0 1 38 1 3 103 1 3 287 chain 5739 chr18 80373285 + 79702675 79702803 Tigger1 2417 + 2209 2337 82187 43 2 0 20 36 38 27 chain 6543 chr18 80373285 + 79761484 79761560 L1MB7 1623 + 19 95 79181 76 chain 36275 chr18 80373285 + 79925828 79926301 MER41A 554 + 19 498 37224 68 5 6 375 13 18 12 chain 4160 chr18 80373285 + 79953685 79953734 MLT1D 503 + 107 156 90389 49 chain 4753 chr18 80373285 + 79956262 79956387 L1MCa 1829 + 1097 1199 86944 36 54 31 35 chain 72493 chr18 80373285 + 79960165 79961063 LTR5_Hs 974 + 68 974 23433 187 18 0 181 0 1 101 4 5 214 4 20 49 8 11 37 2 1 13 0 6 80 chain 44019 chr18 80373285 + 79992494 79993124 PRIMA4_LTR 623 + 0 623 32116 87 0 1 96 8 4 116 10 2 24 1 0 8 0 12 20 0 2 12 17 0 24 0 4 170 4 8 33 chain 41159 chr18 80373285 + 80000090 80000644 THE1B-int 1605 + 0 582 33869 353 0 1 7 3 5 14 2 0 35 16 41 9 0 2 115 chain 44796 chr18 80373285 + 80011515 80012147 LTR14C 587 + 0 587 31706 12 0 2 221 1 2 22 83 0 195 0 35 98 chain 56798 chr18 80373285 + 80018119 80018752 L1PA3long 6157 + 2777 3411 27326 515 0 1 118 chain 16197 chr18 80373285 + 80032361 80032556 PRIMA4_LTR 623 + 0 218 60752 178 0 23 17 chain 16951 chr18 80373285 + 80056840 80057189 THE1D 372 + 5 372 59861 43 3 0 20 60 64 34 26 27 17 12 28 134 chain 30931 chr18 80373285 + 80085131 80085551 MSTA 426 + 1 426 41191 151 1 5 49 3 0 23 9 13 184 chain 5766 chr18 80373285 + 80147841 80147936 MER66B 489 + 83 179 82056 21 11 13 46 1 0 16 chain 277224 chr18 80373285 + 80234752 80237876 L1PA4 6152 + 2381 5520 7513 802 1 0 75 0 5 104 0 4 976 0 4 93 5 4 338 2 1 395 0 1 121 0 4 212 chain 31069 chr19 58617616 + 114120 114492 L1PA7 6471 + 5732 6108 41074 354 0 4 18 chain 165763 chr19 58617616 + 116491 118286 L1PA2 6032 + 3187 4982 11350 1795 chain 23052 chr19 58617616 + 139859 140168 L1PA8A 6298 + 5870 6175 52290 129 9 9 126 4 0 41 chain 511794 chr19 58617616 + 146476 152899 L1PA7 6471 + 0 6468 2672 196 3 2 63 2 3 148 11 7 141 1 8 59 7 8 20 1 0 4 0 1 228 20 14 530 5 0 265 0 1 243 0 1 458 2 3 229 0 1 450 3 1 12 0 4 299 0 7 6 13 11 61 8 8 5 3 0 187 3 7 144 1 0 165 4 2 95 0 1 251 0 5 128 0 35 125 0 2 55 2 0 191 1 2 462 1 0 251 0 1 12 1 0 17 7 11 423 1 0 246 1 2 142 2 0 9 chain 85739 chr19 58617616 + 219410 220473 MER11C 1089 + 0 1089 20494 220 0 5 39 12 15 40 1 18 49 0 1 199 12 13 477 1 0 13 chain 3843 chr19 58617616 + 250852 250895 MER72 723 + 680 723 92543 43 chain 11622 chr19 58617616 + 261897 262048 LTR5B 1012 + 860 1012 67530 15 3 4 10 2 0 114 0 2 7 chain 49006 chr19 58617616 + 264917 265507 LTR10C 591 + 0 591 29952 192 0 1 398 chain 18296 chr19 58617616 + 289462 289717 AluSc8 310 + 29 295 58366 102 18 33 97 0 1 24 5 0 9 chain 29092 chr19 58617616 + 385098 385922 HERVK-int 6823 + 5916 6597 43201 92 1 0 49 3 0 5 1 0 7 1 0 3 1 0 70 2 0 15 1 0 21 17 11 11 1 0 20 2 0 3 1 0 13 172 101 9 2 0 12 1 0 14 3 1 11 2 0 30 20 13 10 10 6 10 11 5 7 1 0 8 1 0 5 3 0 26 1 0 4 1 0 12 35 26 15 2 1 7 1 0 7 5 0 6 9 4 11 chain 72599 chr19 58617616 + 386679 387637 LTR5_Hs 974 + 0 974 23403 110 6 14 161 0 1 166 0 2 13 0 1 177 12 11 163 8 15 19 20 18 103 chain 26381 chr19 58617616 + 479044 479380 LTR3B_ 500 + 0 335 47151 50 2 1 284 chain 36522 chr19 58617616 + 487752 488211 LTR2 463 + 0 463 37067 61 0 3 298 12 13 88 chain 67488 chr19 58617616 + 668598 669599 MER11A 1151 + 0 1151 24582 55 0 99 22 8 0 24 1 0 91 7 3 32 0 2 35 1 0 4 0 1 20 0 1 51 5 6 92 0 1 145 0 1 28 13 30 65 20 54 48 19 28 29 1 0 16 2 3 8 0 1 37 1 0 104 3 1 14 chain 20463 chr19 58617616 + 684478 684747 AluSc 308 + 6 271 55819 14 4 0 111 1 0 74 7 8 58 chain 9723 chr19 58617616 + 893483 893585 U6 107 + 0 102 70996 102 chain 19385 chr19 58617616 + 907939 908167 AluSc 308 + 27 256 57148 90 0 1 138 chain 10178 chr19 58617616 + 1021521 1021628 U6 107 + 0 107 70059 107 chain 20055 chr19 58617616 + 1118063 1118358 AluSp 311 + 10 301 56304 45 32 28 59 0 1 125 2 1 32 chain 7139 chr19 58617616 + 1383562 1383636 tRNA-Asn-AAC 74 + 0 74 77137 74 chain 24750 chr19 58617616 + 1385238 1385534 AluSp 311 + 6 303 49660 167 0 1 129 chain 17596 chr19 58617616 + 1493813 1494081 AluSx 319 + 8 287 59128 126 22 32 49 23 24 48 chain 25009 chr19 58617616 + 1504682 1505032 L1PA8 5853 + 5506 5853 49261 58 1 0 46 2 0 72 8 7 51 2 1 19 1 0 65 6 9 19 chain 2856 chr19 58617616 + 1596950 1596981 MLT1B 390 + 349 380 101181 31 chain 4796 chr19 58617616 + 1965025 1965082 Tigger1 2417 + 1294 1351 86722 57 chain 3917 chr19 58617616 + 2004597 2004640 MER4A1_ 611 + 554 597 92006 43 chain 44440 chr19 58617616 + 2105224 2105735 MER9a1 513 + 0 513 31865 362 0 2 149 chain 4956 chr19 58617616 + 2474291 2474373 MER96B 391 + 99 179 85860 7 1 0 23 6 5 45 chain 5226 chr19 58617616 + 2552323 2552379 MER1A 529 + 255 311 84559 56 chain 3039 chr19 58617616 + 2619270 2619306 MER58A 224 + 47 83 99424 36 chain 3127 chr19 58617616 + 2712765 2712803 MSTA 426 + 388 426 98560 38 chain 23183 chr19 58617616 + 2725051 2725293 AluYb8 318 + 76 318 52105 242 chain 7762 chr19 58617616 + 2863774 2863864 LTR14 556 + 465 555 75456 90 chain 40977 chr19 58617616 + 2865339 2865813 LTR15 485 + 0 474 33984 474 chain 23590 chr19 58617616 + 2954585 2954855 AluSp 311 + 41 311 51449 270 chain 4524 chr19 58617616 + 2966066 2966119 MER65A 464 + 7 60 88192 53 chain 3335 chr19 58617616 + 2969519 2969559 LTR26B 539 + 0 40 96729 40 chain 24538 chr19 58617616 + 3067235 3067535 AluSp 311 + 0 300 49966 9 0 4 276 4 0 11 chain 15509 chr19 58617616 + 3153002 3153183 LTR12F 595 + 402 583 61637 181 chain 47227 chr19 58617616 + 3498223 3499184 PABL_A 660 + 1 660 30562 38 0 3 136 307 0 37 1 46 7 1 0 17 0 1 37 42 0 117 1 0 220 chain 22836 chr19 58617616 + 3602794 3603050 AluY 311 + 40 297 52608 92 0 1 164 chain 2967 chr19 58617616 + 3685821 3685860 MER58A 224 + 142 181 100218 39 chain 17801 chr19 58617616 + 3874958 3875199 LTR10D 510 + 271 510 58894 140 11 9 35 0 1 5 1 0 49 chain 59608 chr19 58617616 + 3998784 3999462 SVA_B 1603 + 886 1603 26482 35 4 0 29 0 40 157 1 0 154 0 4 298 chain 23589 chr19 58617616 + 4243818 4244120 AluSp 311 + 10 309 51450 56 13 7 203 0 3 30 chain 20772 chr19 58617616 + 4246224 4246484 MER41A 554 + 294 554 55404 260 chain 23146 chr19 58617616 + 4514461 4514730 AluY 311 + 18 285 52152 105 2 0 9 0 1 77 1 0 75 chain 3424 chr19 58617616 + 4724069 4724107 tRNA-Gly-GGA 38 + 0 38 95880 38 chain 7804 chr19 58617616 + 4905816 4905898 MER30 238 + 156 238 75370 82 chain 9043 chr19 58617616 + 5411596 5411714 L1MB7 1623 + 1080 1196 72466 105 2 0 11 chain 44403 chr19 58617616 + 5419356 5419894 MER41A 554 + 0 544 31883 87 5 6 375 0 5 71 chain 4931 chr19 58617616 + 5545886 5545942 MLT2A2 560 + 492 548 85990 56 chain 40849 chr19 58617616 + 5548575 5549016 LTR7Y 441 + 0 441 34061 441 chain 244897 chr19 58617616 + 5549016 5552016 HERVH-int 3825 + 0 3120 8352 489 1 57 24 1 0 10 1 0 24 6 56 23 2 0 14 1 0 14 37 0 45 0 1 6 0 2 13 0 3 52 3 0 13 0 3 215 0 16 361 0 1 243 4 31 1024 0 1 277 0 2 53 4 7 40 chain 40764 chr19 58617616 + 5552771 5553212 LTR7Y 441 + 0 441 34114 441 chain 140605 chr19 58617616 + 5701299 5703031 SVA_D 2077 + 7 2076 13053 15 1 0 15 5 0 11 6 7 45 1 2 442 0 80 142 0 4 68 0 350 205 53 0 149 50 0 88 0 10 436 chain 3197 chr19 58617616 + 5702457 5702507 SVA_D 2077 + 1190 1240 38170 50 chain 28234 chr19 58617616 + 5846883 5847617 LTR7B 505 + 2 497 44511 106 0 10 57 345 66 8 0 31 42 0 1 42 1 0 76 14 13 43 chain 124195 chr19 58617616 + 5847700 5849489 HERVH-int 3825 + 78 1967 14814 84 0 1 4 0 1 164 1 0 64 75 21 19 11 54 40 38 0 9 40 212 29 2 0 7 3 8 389 1 3 39 15 0 205 9 0 43 0 1 90 10 5 113 1 0 96 0 1 149 6 5 33 chain 25682 chr19 58617616 + 5849778 5850195 LTR7B 505 + 0 491 48198 105 0 10 27 0 2 40 37 11 25 3 91 51 1 0 14 0 1 18 1 2 44 14 13 37 chain 38526 chr19 58617616 + 5851939 5852518 LTR7B 505 + 2 493 35690 193 72 5 15 36 0 21 4 21 223 2 0 13 chain 31301 chr19 58617616 + 5857251 5857626 LTR7B 505 + 84 479 40894 143 2 0 6 2 24 222 chain 17453 chr19 58617616 + 5880102 5880304 AluSp 311 + 94 296 59290 202 chain 3396 chr19 58617616 + 6248359 6248405 MLT1F1 559 + 62 109 96114 5 0 2 4 1 0 36 chain 14937 chr19 58617616 + 6282041 6282394 L1PA11 4918 + 4316 4629 62339 12 1 0 5 4 0 62 1 0 4 10 9 64 2 0 16 1 0 20 44 31 15 1 0 11 62 46 18 chain 13501 chr19 58617616 + 6323449 6323606 THE1B 368 + 173 328 64314 23 2 0 132 chain 148217 chr19 58617616 + 6354787 6356465 SVA_D 2077 + 8 2056 12470 25 9 0 551 0 116 220 0 265 35 1 0 168 0 1 4 9 8 69 1 0 586 chain 15751 chr19 58617616 + 6389882 6391033 MER84 505 + 10 316 61353 15 12 0 6 1 14 36 4 0 48 12 12 17 8 6 24 841 0 50 5 6 72 chain 6878 chr19 58617616 + 6484403 6484478 AluSp 311 + 225 300 78041 75 chain 36015 chr19 58617616 + 6492581 6494076 MER41A 554 + 0 554 37405 59 7 0 60 6 13 35 353 0 44 5 7 171 13 24 17 614 4 32 0 5 27 0 4 52 chain 29200 chr19 58617616 + 6505811 6506232 LTR7B 505 + 1 495 43043 104 0 10 60 0 38 12 3 27 28 0 2 36 0 1 43 1 0 45 0 1 5 4 3 25 14 13 41 chain 30245 chr19 58617616 + 6511013 6512001 MER4A1 472 + 0 444 41810 111 570 0 105 16 37 50 0 6 46 1 0 89 chain 36968 chr19 58617616 + 6597047 6597508 LTR2 463 + 0 463 36759 206 0 1 155 12 13 88 chain 70146 chr19 58617616 + 6599091 6599985 Harlequin-int 5206 + 135 1011 23964 153 12 1 5 3 0 5 0 1 70 4 0 108 3 0 4 5 0 100 0 7 422 chain 87154 chr19 58617616 + 6600097 6601635 HERVE_a-int 7009 + 5519 6985 20200 13 22 10 42 1 0 23 1 0 56 83 79 222 2 0 102 1 0 14 1 0 4 1 0 56 1 0 4 1 0 10 3 0 5 1 0 14 1 0 80 9 7 127 13 12 11 0 1 23 6 5 26 16 14 12 1 0 5 2 0 7 1 0 37 1 0 21 5 4 42 1 0 5 1 0 25 9 7 55 2 1 6 4 0 29 3 0 54 3 1 21 5 4 32 10 7 13 1 0 19 11 9 30 4 2 11 37 29 18 chain 10852 chr19 58617616 + 6601666 6601787 LTR2 463 + 0 121 68771 121 chain 17992 chr19 58617616 + 6613585 6613809 MER75B 242 + 0 222 58665 216 2 0 6 chain 3098 chr19 58617616 + 6647439 6647473 MLT2C2 476 + 440 474 98808 34 chain 11381 chr19 58617616 + 6673122 6673261 BC200 147 + 6 142 67947 130 3 0 6 chain 81181 chr19 58617616 + 6868974 6869936 LTR13A 966 + 0 966 21394 84 0 6 64 0 3 516 0 6 27 14 3 257 chain 41290 chr19 58617616 + 6907936 6908441 MER9a2 513 + 1 506 33789 170 2 1 203 10 11 120 chain 11152 chr19 58617616 + 6926932 6927067 AluSq10 312 + 156 291 68340 135 chain 35851 chr19 58617616 + 6962280 6962696 L1PA5 6144 + 5728 6144 37497 416 chain 36844 chr19 58617616 + 7092314 7092792 LTR12F 595 + 0 583 36851 103 0 1 42 2 0 21 4 94 103 0 1 143 1 16 59 chain 37041 chr19 58617616 + 7094817 7095310 LOR1a 498 + 0 491 36714 44 1 2 407 7 4 34 chain 35972 chr19 58617616 + 7119989 7120438 MER4A1 472 + 0 472 37427 18 0 1 53 0 1 158 0 21 220 chain 13009 chr19 58617616 + 7176124 7176318 MSTA 426 + 1 200 65104 96 9 8 24 1 0 8 6 13 50 chain 3282 chr19 58617616 + 7234508 7234547 MER2B 336 + 192 231 97170 39 chain 14613 chr19 58617616 + 7244666 7244869 MER75B 242 + 32 242 62784 89 0 1 7 5 8 87 4 7 11 chain 22450 chr19 58617616 + 7270800 7271081 AluY 311 + 22 299 53199 101 1 0 169 3 0 7 chain 20141 chr19 58617616 + 7314298 7314578 L1PB4 2604 + 2193 2452 56203 193 2 0 22 19 0 44 chain 7194 chr19 58617616 + 7370527 7370781 L1MB3 1562 + 991 1296 76960 9 0 50 41 143 144 61 chain 24878 chr19 58617616 + 7756533 7756908 THE1C 375 + 0 375 49478 81 0 7 6 7 1 84 0 3 12 23 20 131 5 4 26 chain 113522 chr19 58617616 + 7756943 7758476 THE1C-int 1605 + 34 1605 16609 295 0 6 110 0 7 115 11 14 54 12 25 100 7 1 39 1 0 9 35 34 331 4 5 154 0 9 145 0 7 111 chain 4897 chr19 58617616 + 7787739 7787804 MIRb 242 + 55 118 86165 12 2 0 51 chain 3175 chr19 58617616 + 7993137 7993171 L1MC2 1988 + 1954 1988 98142 34 chain 14255 chr19 58617616 + 8091845 8092384 L1PB2 3958 + 3617 3838 63260 50 308 0 14 2 1 71 2 0 22 1 0 18 13 7 38 chain 3975 chr19 58617616 + 8163080 8163137 L1MB3 1562 + 1369 1425 91602 52 1 0 4 chain 37679 chr19 58617616 + 8164167 8165347 MER4E1 777 + 19 768 36284 33 0 10 111 0 1 4 1 0 48 298 190 59 337 0 62 12 14 98 1 2 4 1 0 97 1 3 13 chain 7309 chr19 58617616 + 8268933 8269034 LTR13 1007 + 0 95 76639 68 6 0 27 chain 71284 chr19 58617616 + 8314891 8315814 LTR5_Hs 974 + 0 974 23701 47 0 3 25 0 41 526 2 0 8 5 7 114 14 13 38 0 7 35 8 7 22 0 2 79 chain 21651 chr19 58617616 + 8315881 8316170 AluSg7 307 + 9 302 54289 61 0 3 53 0 1 10 20 20 145 chain 116115 chr19 58617616 + 8375577 8377025 LTR12C 1709 + 0 1709 16210 329 4 0 345 0 2 34 0 159 243 1 0 4 4 2 106 0 4 133 0 1 78 0 1 4 61 31 14 0 131 88 chain 54369 chr19 58617616 + 8379160 8379911 LTR12D 1347 + 405 1347 28094 44 0 3 84 42 32 22 1 0 14 0 1 93 17 12 98 0 3 113 0 200 223 chain 52556 chr19 58617616 + 8386395 8387101 LTR12D 1347 + 405 1335 28711 131 1 32 18 5 4 109 14 7 228 0 200 151 0 1 49 chain 6018 chr19 58617616 + 8538886 8538964 L1MB3 1562 + 1444 1522 81007 78 chain 4116 chr19 58617616 + 8545860 8545961 LTR16C 481 + 132 233 90674 11 1 0 23 36 37 30 chain 32659 chr19 58617616 + 8632300 8632713 MER41A 554 + 0 424 39796 396 0 11 17 chain 31185 chr19 58617616 + 8717242 8717582 L1PA4 6152 + 4715 5055 40987 340 chain 147142 chr19 58617616 + 8738749 8740441 SVA_D 2077 + 6 2077 12535 25 1 0 257 0 1 253 0 40 105 0 40 151 0 183 42 0 78 207 0 1 65 0 1 49 2 38 535 chain 11987 chr19 58617616 + 8795187 8795375 MER107 203 + 6 203 66861 26 7 8 110 18 26 27 chain 4939 chr19 58617616 + 8825323 8825401 MADE1 96 - 2 96 85938 36 6 22 36 chain 4642 chr19 58617616 + 8853558 8853739 L1PB4 2604 + 2403 2570 87576 43 109 96 10 1 0 18 chain 11697 chr19 58617616 + 8872218 8872516 L1MB3 1562 + 1259 1515 67403 75 69 56 29 50 24 42 3 0 30 chain 5319 chr19 58617616 + 8873853 8873962 L1P5 443 + 188 289 84100 40 6 5 20 22 15 21 chain 163861 chr19 58617616 + 8911486 8913303 L1PA3long 6157 + 4325 6152 11493 550 0 9 955 0 1 312 chain 20927 chr19 58617616 + 8996086 8996348 L1PA7 6471 + 6207 6466 55223 117 2 0 87 5 4 51 chain 25626 chr19 58617616 + 9003513 9003845 MER4A 717 + 108 451 48276 13 1 0 139 1 13 178 chain 51972 chr19 58617616 + 9053594 9054271 LTR12 884 + 0 884 28882 209 14 121 48 2 0 187 0 102 217 chain 3750 chr19 58617616 + 9071926 9071971 MIRc 230 + 68 113 93235 45 chain 19509 chr19 58617616 + 9082748 9083018 MER41A 554 + 260 554 57011 189 0 1 17 12 34 32 1 2 19 chain 5604 chr19 58617616 + 9084310 9084391 MER4B 649 + 0 88 82787 16 3 10 62 chain 20753 chr19 58617616 + 9136751 9136988 L1PA2 6032 + 5792 6032 55429 50 0 3 187 chain 3487 chr19 58617616 + 9192771 9192826 MER6B 211 - 3 62 95339 18 2 5 28 0 1 7 chain 36818 chr19 58617616 + 9196473 9196894 L1PA5 6144 + 5716 6140 36871 73 0 2 209 1 2 138 chain 41872 chr19 58617616 + 9245605 9246466 LTR66 600 + 0 552 33442 360 0 12 46 14 10 26 316 0 17 1 0 81 chain 102826 chr19 58617616 + 9259331 9260558 LTR12C 1709 + 0 1709 17974 288 0 1 505 8 324 106 0 4 117 0 29 79 0 1 22 0 131 102 chain 7901 chr19 58617616 + 9271564 9271730 Tigger3b 1229 + 148 313 75109 44 0 34 11 45 11 48 1 0 17 chain 114893 chr19 58617616 + 9321217 9322843 LTR12C 1709 + 0 1709 16401 166 0 1 36 1 2 60 1 2 28 0 4 162 111 0 7 92 0 186 0 278 180 1 0 5 3 1 99 7 11 481 chain 456610 chr19 58617616 + 9397704 9402908 L1PA4 6152 + 0 5300 4218 130 1 15 474 0 1 180 0 14 64 0 1 76 0 4 290 0 3 199 0 4 404 0 1 56 0 5 180 0 3 864 0 2 376 0 5 164 0 1 165 2 1 299 0 1 326 0 1 652 0 37 302 chain 38068 chr19 58617616 + 9429902 9430424 HERV1_LTRa 508 + 0 508 36019 41 7 6 43 33 17 4 0 1 236 0 1 14 0 2 87 0 3 14 4 0 39 chain 6595 chr19 58617616 + 9449584 9449666 L1PA16 3655 + 1580 1663 78986 23 0 1 59 chain 350766 chr19 58617616 + 9455956 9462119 HERVK9-int 4720 + 36 4720 5901 13 26 22 58 2 0 28 46 45 668 15 5 191 0 10 322 1 0 108 0 1 291 0 1 22 2 0 533 1 0 38 1 2 196 1 5 315 0 30 504 657 0 230 1 0 129 1 10 77 206 0 45 1 3 167 0 3 64 0 2 206 655 0 10 2 0 303 9 8 8 0 1 10 chain 6260 chr19 58617616 + 9459366 9459456 HERVK9-int 4720 + 3471 3561 80127 5 0 1 5 1 0 79 chain 10921 chr19 58617616 + 9476123 9476282 THE1D 372 + 0 158 68665 47 3 0 20 11 12 60 0 1 18 chain 115520 chr19 58617616 + 9481101 9482428 L1PA6 6164 + 4832 6159 16307 27 0 1 455 1 0 844 chain 143866 chr19 58617616 + 9482670 9484307 SVA_C 1631 + 41 1630 12779 823 1 0 46 1 0 40 1 0 56 45 0 624 chain 3790 chr19 58617616 + 9483638 9483681 SVA_C 1631 + 960 1003 66237 43 chain 44104 chr19 58617616 + 9486373 9487322 LTR10E 629 + 1 623 32079 9 1 0 55 331 0 99 0 2 62 0 2 64 6 5 262 18 19 19 8 9 15 chain 5350 chr19 58617616 + 9548595 9549020 LTR12C 1709 + 987 1446 83956 35 49 0 9 282 365 50 chain 23455 chr19 58617616 + 9553011 9553370 MER66B 489 + 44 404 51665 148 1 3 124 40 22 17 1 18 28 chain 3233 chr19 58617616 + 9599189 9599225 MER54B 801 + 597 633 97645 36 chain 5916 chr19 58617616 + 9609408 9609477 MLT1B-int 1170 + 384 453 81418 69 chain 82265 chr19 58617616 + 9648996 9650041 MER11C 1089 + 0 1073 21188 246 0 9 60 4 8 367 1 5 10 0 1 31 0 1 32 4 12 83 0 1 54 1 0 142 0 1 10 chain 8086 chr19 58617616 + 9651960 9652098 MLT1B-int 1170 + 378 517 74668 75 32 33 31 chain 134327 chr19 58617616 + 9679320 9680934 SVA_C 1631 + 12 1624 13615 8 0 1 519 40 0 315 17 64 5 0 1 31 2 0 3 3 0 43 2 0 5 5 4 7 1 0 233 3 1 372 chain 74801 chr19 58617616 + 9697448 9698493 MER11C 1089 + 0 1063 22890 241 8 17 48 0 2 5 8 10 62 1 0 149 52 44 112 1 5 42 0 1 32 5 13 82 0 1 54 1 0 117 0 1 25 chain 301154 chr19 58617616 + 9704184 9707920 Harlequin-int 5206 + 299 4020 6796 185 8 0 38 5 6 646 0 2 112 3 1 274 1 0 63 0 1 214 1 0 4 0 1 414 1 2 287 30 18 731 1 0 173 25 28 189 6 7 325 chain 78499 chr19 58617616 + 9763868 9764752 MER11D 897 + 0 897 21982 302 0 13 582 chain 88594 chr19 58617616 + 9775762 9776770 LTR13 1007 + 0 1007 19923 304 1 0 703 chain 22490 chr19 58617616 + 9777391 9777648 AluSc5 308 + 1 258 53132 257 chain 15391 chr19 58617616 + 9803205 9803398 MER4E1 777 + 583 777 61798 61 0 1 132 chain 12908 chr19 58617616 + 9879439 9879671 MSTA 426 + 177 426 65235 29 2 1 25 33 31 33 6 26 104 chain 20811 chr19 58617616 + 10444253 10444513 AluSp 311 + 21 297 55344 73 4 20 183 chain 20923 chr19 58617616 + 10452197 10452455 AluSp 311 + 40 299 55229 43 0 2 185 1 0 29 chain 14437 chr19 58617616 + 10478093 10478251 SVA_B 1603 + 1439 1597 62982 158 chain 27046 chr19 58617616 + 10480683 10480984 AluYa5 310 + 8 305 46206 12 5 1 284 chain 25127 chr19 58617616 + 10524533 10524839 AluSp 311 + 0 304 49076 35 1 0 90 1 0 179 chain 3119 chr19 58617616 + 10537478 10537532 MER33 330 + 231 283 98633 22 4 2 28 chain 16679 chr19 58617616 + 10634287 10634479 AluSp 311 + 105 297 60173 192 chain 3257 chr19 58617616 + 10837066 10837104 MIRb 242 + 102 140 97395 38 chain 3393 chr19 58617616 + 10897192 10897231 MIRc 230 + 68 107 96131 39 chain 13901 chr19 58617616 + 11103792 11103969 MER83 447 + 80 256 63732 82 1 0 94 chain 24918 chr19 58617616 + 11104001 11104292 AluSq10 312 + 11 300 49402 122 2 0 167 chain 3000 chr19 58617616 + 11118311 11118394 MER20 218 + 33 118 99834 18 10 11 16 18 19 21 chain 27929 chr19 58617616 + 11132435 11132744 AluYb8 318 + 0 310 44984 97 1 2 211 chain 19733 chr19 58617616 + 11137381 11137610 AluSp 311 + 30 259 56748 229 chain 56002 chr19 58617616 + 11302958 11303559 SVA_D 2077 + 1464 2065 27564 601 chain 9037 chr19 58617616 + 11408771 11408878 HY1 111 + 0 111 72481 45 0 4 62 chain 3535 chr19 58617616 + 11497364 11497408 MIR 256 + 17 65 94972 6 0 4 38 chain 15577 chr19 58617616 + 11523082 11523308 Tigger2 2703 + 2286 2526 61557 15 8 14 145 14 17 36 0 5 8 chain 8909 chr19 58617616 + 11543360 11543463 L1PA6 6164 + 6046 6149 72765 103 chain 5820 chr19 58617616 + 11610622 11610691 LTR23 429 + 294 363 81824 69 chain 126377 chr19 58617616 + 11632771 11634349 THE1A-int 1579 + 0 1579 14496 15 1 3 95 6 10 158 0 2 119 8 0 21 0 1 173 17 18 382 1 0 14 1 0 147 0 1 420 chain 20528 chr19 58617616 + 11634349 11634635 THE1A 353 + 0 304 55747 77 12 13 18 3 2 30 0 18 146 chain 24988 chr19 58617616 + 11638972 11639270 AluSc5 308 + 4 305 49303 62 0 1 210 0 2 26 chain 4196 chr19 58617616 + 11688524 11688587 LTR45B 484 + 56 120 90157 20 7 8 36 chain 13811 chr19 58617616 + 11692276 11692462 PABL_A 660 + 0 194 63868 13 1 0 37 1 5 13 0 5 121 chain 24217 chr19 58617616 + 11745288 11745575 AluSc 308 + 7 294 50468 287 chain 10522 chr19 58617616 + 11765480 11765645 THE1B 368 + 137 306 69376 32 1 0 28 0 3 14 13 16 12 1 0 64 chain 85722 chr19 58617616 + 11771401 11772398 LTR13 1007 + 0 1007 20498 269 0 2 128 0 3 62 0 2 275 0 1 58 0 2 16 2 1 77 0 1 110 chain 42468 chr19 58617616 + 11880362 11880887 LTR10G 522 + 0 522 33083 113 1 0 239 0 1 95 4 1 73 chain 38234 chr19 58617616 + 11886326 11886834 LTR10G 522 + 18 522 35886 98 1 0 237 1 0 12 5 6 73 9 6 72 chain 483544 chr19 58617616 + 11906254 11911821 L1PA5 6144 + 559 6135 3566 346 0 1 62 0 1 155 7 11 34 9 0 74 2 1 206 0 1 75 0 3 388 2 4 388 3 0 70 0 4 510 0 1 786 0 4 340 2 0 754 0 1 201 1 0 913 0 1 106 0 2 133 chain 39248 chr19 58617616 + 11921893 11922472 LTR61 567 + 0 558 35179 22 3 0 33 17 11 27 7 0 22 0 1 15 9 6 89 1 0 287 2 0 3 1 0 30 0 1 11 chain 14033 chr19 58617616 + 11990616 11991266 L1PB1 5432 + 5146 5427 63539 10 2 0 3 2 0 9 2 0 9 0 3 16 9 7 17 4 1 15 1 0 45 1 0 20 28 7 8 328 0 11 2 0 4 1 0 15 3 1 23 1 0 21 1 0 13 1 0 15 1 0 4 1 0 4 chain 4700 chr19 58617616 + 11995686 11995744 HSMAR1 1287 + 12 70 87275 58 chain 8509 chr19 58617616 + 12011889 12011991 LTR8 732 + 65 166 73661 73 1 0 28 chain 38227 chr19 58617616 + 12022005 12022511 MER9a3 513 + 0 513 35891 18 0 2 80 20 21 135 1 0 51 0 4 123 0 1 78 chain 360246 chr19 58617616 + 12023069 12027345 HERVK9-int 4720 + 134 4718 5799 26 1 0 273 0 1 50 1 8 387 5 4 85 0 12 371 2 4 191 0 255 133 0 6 197 1 0 156 0 1 217 1 0 1184 4 21 263 0 1 441 0 6 185 0 4 89 1 0 4 0 1 8 chain 25596 chr19 58617616 + 12038534 12038841 AluSq10 312 + 0 306 48324 133 1 0 173 chain 37369 chr19 58617616 + 12060743 12061205 LTR2 463 + 0 463 36505 362 12 13 88 chain 12332 chr19 58617616 + 12075065 12075206 L1PA4 6152 + 6002 6144 66247 69 0 1 72 chain 21681 chr19 58617616 + 12143253 12143524 AluSc 308 + 20 292 54254 25 12 13 234 chain 20892 chr19 58617616 + 12149034 12149304 AluSc5 308 + 35 300 55266 104 1 2 9 8 2 148 chain 7444 chr19 58617616 + 12154172 12154261 LTR24C 604 + 227 316 76260 89 chain 29304 chr19 58617616 + 12232958 12233402 LTR19A 502 + 0 502 42887 66 1 3 108 1 5 12 11 10 21 0 1 52 0 39 102 11 13 23 9 16 12 0 4 15 chain 34376 chr19 58617616 + 12278023 12278493 MER9a3 513 + 0 513 38446 18 0 2 6 1 24 50 10 11 66 0 1 80 0 17 159 0 1 10 2 0 68 chain 3380 chr19 58617616 + 12282362 12282399 LTR44 473 + 0 37 96296 37 chain 32104 chr19 58617616 + 12295709 12296164 LTR2 463 + 0 463 40268 56 0 4 50 5 6 38 3 7 10 0 1 133 4 8 67 1 2 16 5 0 13 1 0 28 1 0 24 chain 93885 chr19 58617616 + 12361747 12362886 SVA_C 1631 + 61 1292 19059 609 40 0 49 0 40 93 0 92 348 chain 36351 chr19 58617616 + 12404838 12405276 MLT2A1 477 + 2 477 37171 138 0 1 28 0 4 215 0 32 57 chain 76245 chr19 58617616 + 12416913 12417947 MER11A 1151 + 0 1151 22499 79 0 8 140 0 4 63 0 11 21 0 17 189 0 13 128 15 18 12 1 2 38 0 4 67 0 1 19 4 62 98 5 4 87 1 0 27 1 0 39 chain 40106 chr19 58617616 + 12450588 12451187 LTR14B 630 + 10 630 34589 153 1 0 99 0 11 13 6 31 20 20 19 33 0 9 16 42 20 196 chain 104932 chr19 58617616 + 12451395 12452901 HERVK14-int 1672 + 6 1665 17699 24 1 0 4 7 6 46 1 0 220 6 5 15 1 0 5 4 3 230 4 3 46 1 0 206 1 0 133 1 4 26 1 0 4 0 148 58 20 38 78 2 1 107 1 0 63 7 6 23 2 0 11 1 0 114 4 5 21 1 0 6 chain 33855 chr19 58617616 + 12460780 12461168 L1PA5 6144 + 5753 6143 38810 218 0 2 170 chain 139215 chr19 58617616 + 12467121 12468707 SVA_D 2077 + 18 2076 13169 167 2 0 31 1 0 324 0 40 185 2 39 113 0 391 37 0 2 4 0 1 36 0 1 4 6 7 44 0 1 4 0 1 626 chain 78752 chr19 58617616 + 12491887 12494914 L1MA3 4352 + 2337 4344 21931 156 0 6 17 5 0 72 0 1 10 2 3 27 1732 753 14 6 7 74 1 4 38 5 0 160 7 0 73 12 10 92 3 0 11 5 7 221 42 12 7 0 7 60 6 5 73 3 1 24 2 1 5 1 0 26 1 0 14 6 2 14 chain 7671 chr19 58617616 + 12537311 12537437 MER2 342 + 91 215 75698 23 1 0 43 15 14 44 chain 45314 chr19 58617616 + 12566425 12566922 L1PA3long 6157 + 5660 6157 31412 497 chain 44012 chr19 58617616 + 12569850 12570396 MLT2A2 560 + 0 559 32121 28 0 5 346 1 0 63 0 4 40 0 4 39 0 1 29 chain 3648 chr19 58617616 + 12590751 12590796 L1MC2 1988 + 524 569 94034 45 chain 33392 chr19 58617616 + 12599537 12600080 PABL_A-int 1935 + 106 646 39185 27 24 22 13 0 4 71 1 0 53 1 0 37 2 0 5 17 22 49 1 3 49 1 0 117 27 20 48 chain 59253 chr19 58617616 + 12621717 12622370 SVA_F 1814 + 1122 1812 26584 16 1 0 39 1 0 10 1 0 36 0 37 151 0 3 398 chain 21376 chr19 58617616 + 12660234 12660501 AluSc 308 + 11 279 54667 40 0 1 4 2 1 53 0 2 145 1 0 22 chain 90270 chr19 58617616 + 12711903 12712913 LTR13 1007 + 0 1006 19632 426 4 0 580 chain 5033 chr19 58617616 + 12885154 12885216 MER96 175 + 8 70 85497 62 chain 10460 chr19 58617616 + 12920247 12920795 MER39B 650 + 255 486 69497 20 3 4 24 81 56 62 297 4 61 chain 4513 chr19 58617616 + 12920319 12920369 MER39B 650 - 262 312 88253 50 chain 11808 chr19 58617616 + 12959361 12959515 L1MB3 1562 + 1272 1425 67188 80 1 0 73 chain 4250 chr19 58617616 + 13080111 13080203 MER96B 391 + 23 115 89827 16 25 26 42 1 0 8 chain 5388 chr19 58617616 + 13307573 13307640 MER74A 558 + 473 540 83758 67 chain 5910 chr19 58617616 + 13322345 13322477 MLT1C 463 + 305 428 81442 15 35 31 10 5 0 67 chain 2895 chr19 58617616 + 13347541 13347653 MER58A 224 + 75 186 100874 16 62 61 34 chain 3443 chr19 58617616 + 13395709 13395751 MER39B 650 + 336 378 95711 42 chain 4569 chr19 58617616 + 13411081 13411157 MADE1 96 + 0 96 87968 15 11 30 24 0 1 26 chain 7230 chr19 58617616 + 13443159 13443250 MSTC 436 + 346 436 76860 26 1 0 64 chain 3941 chr19 58617616 + 13443871 13443988 MIRb 242 + 91 238 91819 23 0 3 9 53 80 32 chain 20056 chr19 58617616 + 13480215 13480543 Tigger2 2703 + 2302 2649 56302 18 1 13 42 1 10 104 18 16 35 7 0 8 14 21 80 chain 56547 chr19 58617616 + 13529529 13530268 L1PA8 5853 + 5119 5853 27410 159 0 2 284 1 0 43 3 1 70 2 1 12 4 0 7 0 3 39 2 1 19 1 0 93 chain 20933 chr19 58617616 + 13543650 13543951 L1MA2 4263 + 3820 4114 55216 19 0 2 89 0 1 25 11 9 91 12 5 44 1 0 9 chain 2629 chr19 58617616 + 13576115 13576233 L2a 937 + 575 685 102837 15 66 59 12 2 1 23 chain 3872 chr19 58617616 + 13628965 13629011 MSTC 436 + 390 436 92339 46 chain 20739 chr19 58617616 + 13654288 13654575 MER39B 650 + 14 318 55444 28 0 13 110 0 1 14 2 1 36 9 13 88 chain 15473 chr19 58617616 + 13664594 13665272 LTR8 732 + 0 685 61695 19 0 1 12 23 32 92 7 6 11 415 413 99 chain 6695 chr19 58617616 + 13670178 13670304 Charlie20a 515 + 320 444 78659 32 27 26 39 1 0 27 chain 25002 chr19 58617616 + 13689782 13690065 L1PA5 6144 + 5861 6144 49271 283 chain 134665 chr19 58617616 + 13702803 13704547 SVA_F 1814 + 335 1814 13576 552 1 0 41 49 0 20 3 18 128 50 0 93 179 0 617 1 0 10 chain 3939 chr19 58617616 + 13703397 13703446 SVA_F 1814 + 992 1119 56162 8 0 1 10 2 1 12 5 83 12 chain 2191 chr19 58617616 + 13703619 13703647 SVA_F 1814 + 989 1016 79871 22 2 1 4 chain 13816 chr19 58617616 + 13703740 13703896 SVA_F 1814 + 1138 1291 58891 39 2 0 97 1 0 17 chain 29313 chr19 58617616 + 13726915 13727226 AluYa5 310 + 0 310 42864 132 1 0 178 chain 5157 chr19 58617616 + 13740952 13741038 MLT1F2 592 + 476 569 84877 56 13 20 17 chain 26871 chr19 58617616 + 14009260 14010300 MER41A 554 + 0 369 46441 144 673 0 78 8 11 96 1 0 40 chain 88778 chr19 58617616 + 14012211 14013518 L1PB1 5432 + 4116 5420 19893 11 0 26 17 1 0 39 1 0 24 11 12 245 0 12 116 3 0 156 2 0 38 5 3 297 3 2 24 1 0 9 1 0 10 6 2 9 3 1 51 2 1 16 1 0 40 9 8 11 5 0 12 9 0 19 3 1 4 1 0 14 2 0 24 1 0 32 3 2 16 chain 5632 chr19 58617616 + 14025452 14025541 MER1A 529 + 346 434 82652 35 11 10 43 chain 3393 chr19 58617616 + 14034097 14034136 MIRc 230 + 68 107 96130 39 chain 21419 chr19 58617616 + 14084555 14084841 AluSg7 307 + 5 285 54613 115 7 6 16 9 1 6 0 3 133 chain 21611 chr19 58617616 + 14170922 14171291 MSTA 426 + 0 402 54337 100 3 4 39 0 25 37 63 62 33 10 18 84 chain 25392 chr19 58617616 + 14213974 14214265 AluSg4 309 + 3 294 48638 291 chain 3596 chr19 58617616 + 14235964 14236008 MLT1C 463 + 58 102 94460 44 chain 13750 chr19 58617616 + 14278079 14278396 LTR12C 1709 + 776 1109 63949 61 0 1 51 46 99 16 44 6 58 2 17 7 15 0 17 chain 2001 chr19 58617616 + 14278216 14278237 LTR12C 1709 + 1033 1054 106277 21 chain 24932 chr19 58617616 + 14282279 14282570 AluSg7 307 + 15 307 49380 116 0 1 175 chain 2970 chr19 58617616 + 14305945 14305979 MER58A 224 + 45 79 100199 34 chain 32498 chr19 58617616 + 14343705 14344527 LTR7B 505 + 0 505 39943 50 0 2 63 0 1 72 71 0 46 6 58 44 303 0 89 1 0 11 2 7 37 6 4 21 chain 23488 chr19 58617616 + 14399289 14399592 AluYa5 310 + 9 310 51608 55 39 37 209 chain 5696 chr19 58617616 + 14637828 14637912 LTR26 622 + 528 613 82360 37 6 7 41 chain 7681 chr19 58617616 + 14639717 14639807 MER34A1 583 + 46 136 75675 90 chain 23391 chr19 58617616 + 14640652 14641009 THE1A 353 + 0 353 51777 15 2 0 32 0 1 46 1 0 18 0 1 6 33 32 51 2 0 151 chain 36362 chr19 58617616 + 14667404 14667836 L1PA6 6164 + 5719 6162 37167 271 3 14 158 chain 19456 chr19 58617616 + 14676434 14676646 AluYk4 311 + 93 305 57084 212 chain 16086 chr19 58617616 + 14705666 14705930 MER1B 344 + 47 344 60908 38 8 16 33 7 28 54 4 0 15 0 1 35 11 18 59 chain 22136 chr19 58617616 + 14708917 14709286 MSTA 426 + 0 411 53648 104 20 44 58 4 0 6 0 4 20 5 3 57 30 50 65 chain 33365 chr19 58617616 + 14753888 14754307 MLT2A1 477 + 0 408 39203 169 4 1 9 0 1 24 0 1 180 4 0 14 6 0 9 chain 6579 chr19 58617616 + 14754338 14754412 MLT2A1 477 + 95 169 79041 74 chain 6977 chr19 58617616 + 14762084 14762201 MER4B 649 + 533 641 77679 31 1 0 16 0 1 5 9 1 46 1 0 8 chain 35448 chr19 58617616 + 14812242 14812715 LTR2B 499 + 9 499 37754 5 1 0 96 0 19 179 0 1 8 1 0 127 14 13 42 chain 40685 chr19 58617616 + 14816240 14816787 MLT2A2 560 + 0 558 34157 403 32 43 112 chain 14687 chr19 58617616 + 14820354 14820564 L1PA8 5853 + 5647 5853 62688 30 3 2 8 2 1 52 2 1 19 1 0 93 chain 18442 chr19 58617616 + 14843808 14844072 L1PA8 5853 + 5589 5848 58180 21 2 0 68 6 5 57 2 1 19 2 1 87 chain 4952 chr19 58617616 + 14866702 14866761 LTR19B 566 + 452 513 85883 41 0 2 18 chain 20024 chr19 58617616 + 14872461 14872709 L1PA7 6471 + 6211 6470 56357 126 0 14 8 3 0 111 chain 41208 chr19 58617616 + 14884449 14884963 L1P3 4156 + 3631 4139 33835 200 1 0 174 2 0 102 2 0 7 2 1 24 chain 29235 chr19 58617616 + 14944485 14944880 MER83 447 + 0 403 42990 60 0 3 8 1 6 103 1 0 104 12 13 106 chain 44946 chr19 58617616 + 14958933 14959561 LTR10E 629 + 0 622 31608 10 0 1 56 0 3 90 17 14 122 4 3 77 1 0 43 0 1 44 3 0 84 25 22 52 chain 4215 chr19 58617616 + 14962572 14962625 L1MA8 2339 + 1711 1764 90031 53 chain 25821 chr19 58617616 + 14964853 14965512 L1PB3 3668 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0 470 40169 136 23 36 65 14 13 98 0 1 71 15 14 36 chain 38052 chr19 58617616 + 15079080 15079563 L1PA8 5853 + 5377 5853 36031 187 1 0 46 2 0 69 2 1 8 1 0 52 2 1 19 1 0 93 chain 7065 chr19 58617616 + 15163890 15164004 L1MB8 1703 + 1451 1564 77387 45 13 12 56 chain 6016 chr19 58617616 + 15182526 15183354 MER33 330 + 132 295 81017 25 7 8 18 5 9 17 700 29 10 0 1 46 chain 115948 chr19 58617616 + 15362358 15364009 SVA_C 1631 + 0 1470 16247 11 0 9 15 0 25 480 40 0 144 36 36 132 4 0 12 2 0 3 1 0 21 78 0 22 4 0 3 79 0 37 3 0 9 1 0 43 2 0 5 14 11 233 3 1 169 1 5 44 chain 2237 chr19 58617616 + 15363048 15363084 SVA_C 1631 + 724 760 43300 36 chain 4908 chr19 58617616 + 15363366 15363445 SVA_C 1631 + 1005 1082 43300 2 2 1 10 1 0 64 chain 4187 chr19 58617616 + 15393985 15394162 L1MB7 1623 + 1252 1426 90219 13 9 3 14 34 42 14 1 0 6 1 0 19 36 33 30 chain 34907 chr19 58617616 + 15516114 15516655 LTR10E 629 + 153 629 38091 11 0 2 20 63 0 110 4 3 255 30 28 41 1 0 6 chain 9965 chr19 58617616 + 15580282 15580411 MER85 139 + 0 139 70497 92 1 11 36 chain 229192 chr19 58617616 + 15596897 15599435 L1PA3long 6157 + 3600 6157 8770 346 0 1 1062 0 8 14 1 0 352 0 1 6 1 0 94 0 10 520 0 1 142 chain 67176 chr19 58617616 + 15694647 15695507 L1PA3long 6157 + 5314 6157 24652 53 22 0 527 5 4 236 0 6 17 chain 111281 chr19 58617616 + 15707369 15708596 L1PA2 6032 + 4724 5952 16910 18 6 7 1203 chain 27242 chr19 58617616 + 15714131 15714432 L1HS 6032 + 5733 6032 45909 285 2 0 14 chain 37904 chr19 58617616 + 15828737 15829200 LTR7C 471 + 0 471 36135 104 0 4 110 0 3 228 5 6 16 chain 35730 chr19 58617616 + 15835690 15836138 LTR7C 471 + 0 437 37578 110 0 1 56 17 0 116 3 7 29 0 1 117 chain 22291 chr19 58617616 + 15850619 15850990 MER4B 649 + 2 386 53420 26 1 0 26 2 0 35 7 0 23 22 7 58 17 40 125 1 16 28 chain 14183 chr19 58617616 + 15855890 15856196 L1PB1 5432 + 5115 5403 63339 23 1 0 8 1 0 10 2 0 3 2 0 9 2 0 52 2 1 9 5 6 44 1 0 12 18 5 8 0 1 13 6 12 15 2 0 14 0 1 9 1 0 14 8 7 12 chain 36600 chr19 58617616 + 15873824 15874297 LTR10F 562 + 0 560 37016 105 0 112 11 1 4 18 28 0 310 chain 6729 chr19 58617616 + 15895679 15895762 MLT2B2 565 + 0 83 78547 83 chain 95688 chr19 58617616 + 15899147 15900618 LTR12C 1709 + 0 1709 18811 118 353 0 220 3 0 122 5 8 182 0 485 89 0 4 168 0 102 211 chain 8152 chr19 58617616 + 15899525 15899614 L1PA3long 6157 + 5843 5932 74516 89 chain 23203 chr19 58617616 + 15903993 15904519 MLT2A2 560 + 0 560 52078 168 13 12 13 117 226 79 2 1 6 0 1 4 74 0 50 chain 13799 chr19 58617616 + 15925482 15925680 L1PA8 5853 + 5658 5852 63886 24 1 0 12 2 1 45 2 1 19 1 0 92 chain 4709 chr19 58617616 + 15939350 15939443 MER72B 755 + 71 164 87202 23 27 27 43 chain 112785 chr19 58617616 + 15968547 15969810 L1PA4 6152 + 4881 6143 16708 931 1 0 331 chain 3588 chr19 58617616 + 15992333 15992376 THE1D-int 1627 + 242 285 94533 43 chain 4644 chr19 58617616 + 16007931 16007990 MLT2A2 560 + 499 560 87567 6 0 1 46 0 1 7 chain 24239 chr19 58617616 + 16241714 16242002 AluSp 311 + 2 293 50438 98 0 1 161 1 3 28 chain 23926 chr19 58617616 + 16244582 16244837 AluYb8 318 + 34 289 50903 255 chain 5639 chr19 58617616 + 16279135 16279225 MER20 218 + 45 131 82603 28 12 9 9 1 0 40 chain 4959 chr19 58617616 + 16286008 16286074 MADE1 96 + 1 94 85842 44 0 27 22 chain 24074 chr19 58617616 + 16296369 16296655 AluSp 311 + 11 297 50695 286 chain 4504 chr19 58617616 + 16307811 16307866 MER4A1 472 + 417 472 88300 55 chain 10574 chr19 58617616 + 16352305 16352451 Tigger2a 444 + 50 208 69280 28 0 9 29 4 7 85 chain 3288 chr19 58617616 + 16388443 16388497 L1MEf 1413 + 782 835 97123 24 5 4 25 chain 8331 chr19 58617616 + 16418689 16418871 MLT1A0 366 + 73 254 74082 45 7 8 33 21 20 20 24 23 32 chain 3174 chr19 58617616 + 16507034 16507073 MER20 218 + 26 66 98150 18 0 1 21 chain 13670 chr19 58617616 + 16607652 16607838 MER30 238 + 0 236 64053 36 2 24 49 1 29 98 chain 24962 chr19 58617616 + 16678156 16678448 AluSc 308 + 8 300 49348 292 chain 12845 chr19 58617616 + 16790460 16790630 L1PA8 5853 + 5686 5853 65364 7 1 0 47 2 1 19 1 0 93 chain 9780 chr19 58617616 + 16821229 16821399 MER41B 635 + 0 171 70866 101 36 37 33 chain 41151 chr19 58617616 + 16823252 16824707 MER41A 554 + 0 554 33876 155 318 0 32 0 10 173 603 9 51 0 1 123 chain 38841 chr19 58617616 + 16824708 16825246 MER41A 554 + 0 554 35474 193 16 28 148 2 1 60 1 2 37 1 6 46 2 1 32 chain 3294 chr19 58617616 + 16848970 16849007 tRNA-Lys-AAG 49 + 1 38 97069 37 chain 3452 chr19 58617616 + 16890687 16890796 MLT1C 463 + 57 165 95634 33 20 26 10 6 0 10 16 15 14 chain 21073 chr19 58617616 + 16911978 16912262 MER1A 529 + 233 520 55034 99 0 1 106 0 1 9 11 12 59 chain 3348 chr19 58617616 + 16950912 16950951 MLT1C 463 + 380 419 96615 39 chain 533669 chr19 58617616 + 16961044 16967496 L1PA6 6164 + 0 6161 1672 567 4 3 338 0 1 1423 1 2 466 0 4 379 1 2 431 0 2 85 1 0 93 3 0 134 299 0 409 3 4 13 1 0 322 0 1 708 0 4 713 0 4 45 5 0 8 chain 23675 chr19 58617616 + 17035433 17035731 AluSp 311 + 5 299 51315 146 11 8 18 1 0 122 chain 7043 chr19 58617616 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17619856 17619925 MIRb 242 + 37 115 90757 13 9 18 47 chain 11461 chr19 58617616 + 17661802 17661959 MER1A 529 + 41 194 67811 37 10 6 110 chain 5044 chr19 58617616 + 17672011 17672080 MLT1J 494 + 97 165 85448 35 1 0 33 chain 10519 chr19 58617616 + 17711959 17712106 MER39B 650 + 261 409 69384 78 7 8 62 chain 3020 chr19 58617616 + 17780499 17780546 MER20 218 + 28 76 99647 16 5 6 26 chain 5705 chr19 58617616 + 17853082 17853148 MLT1A0 366 + 90 156 82318 66 chain 15153 chr19 58617616 + 17899494 17899693 THE1A 353 + 151 353 62091 78 0 1 4 2 1 68 0 3 47 chain 123391 chr19 58617616 + 17899693 17901265 THE1A-int 1579 + 0 1574 14966 12 3 5 317 1 0 154 0 1 653 1 5 5 4 0 162 1 2 59 10 9 58 0 1 119 1 0 12 chain 10310 chr19 58617616 + 17917339 17917477 MER1A 529 + 255 408 69783 62 0 1 4 2 1 43 0 15 27 chain 156619 chr19 58617616 + 17917611 17919505 SVA_D 2077 + 8 2076 11960 17 5 0 12 0 19 48 0 27 85 1 0 509 23 26 10 3 0 134 0 83 56 23 73 76 48 0 169 0 49 37 0 1 181 1 0 456 chain 2834 chr19 58617616 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2 6 19 18 139 332 0 161 1 0 35 0 1 38 0 4 10 chain 7387 chr19 58617616 + 19289826 19289916 MER21B 843 + 349 439 76430 90 chain 30223 chr19 58617616 + 19585544 19585972 LTR7B 505 + 0 498 41826 108 0 10 66 6 68 28 5 7 47 7 5 26 1 0 76 14 13 44 chain 3933 chr19 58617616 + 19697023 19697079 PABL_A 660 + 187 245 91887 18 1 3 37 chain 3475 chr19 58617616 + 19697214 19697254 MER51C 639 + 47 87 95415 40 chain 13399 chr19 58617616 + 19698736 19698924 PABL_A 660 + 0 191 64477 84 0 9 44 2 1 14 4 0 26 1 0 13 chain 115045 chr19 58617616 + 19769463 19770833 SVA_B 1603 + 6 1603 16384 13 49 34 131 0 1 609 9 89 37 0 159 316 0 2 206 chain 94713 chr19 58617616 + 19804009 19805075 L1PA6 6164 + 5072 6147 18942 54 0 6 183 0 3 829 chain 14115 chr19 58617616 + 19820719 19820895 MER57E3 465 + 261 437 63430 176 chain 30853 chr19 58617616 + 19822959 19823364 LTR66 600 + 0 400 41264 33 1 2 146 7 0 204 0 1 14 chain 5206 chr19 58617616 + 19823370 19823429 LTR66 600 + 335 394 84648 59 chain 43910 chr19 58617616 + 19823429 19824024 LTR66 600 + 0 574 32186 194 0 2 68 0 1 37 2 0 111 4 0 46 32 14 101 chain 37283 chr19 58617616 + 19824243 19825148 HERVL66-int 1251 + 122 876 36561 30 31 0 10 7 0 19 54 48 26 28 0 44 21 2 16 88 57 117 7 5 60 0 7 14 22 19 44 5 4 34 1 0 68 11 9 57 16 9 9 20 0 46 chain 30899 chr19 58617616 + 19862069 19862459 LTR66 600 + 0 401 41217 253 1 12 136 chain 12058 chr19 58617616 + 19868687 19868836 L1PA7 6471 + 6314 6462 66740 133 1 0 15 chain 9974 chr19 58617616 + 19872608 19872800 LTR70 1284 + 1091 1283 70475 20 9 13 21 35 34 14 1 0 43 1 0 40 1 0 7 chain 110231 chr19 58617616 + 19895559 19897330 HERVE_a-int 7009 + 5279 6991 17050 34 9 0 111 30 28 10 1 0 70 1 0 10 7 0 42 1 0 23 1 0 44 6 5 38 2 1 10 1 0 14 5 8 216 0 6 15 2 0 29 1 2 71 1 0 14 1 0 4 1 0 56 1 0 4 1 3 13 1 0 13 0 3 76 4 2 4 0 1 128 13 12 35 1 0 31 1 0 10 1 0 16 1 0 5 2 0 7 1 0 37 2 1 20 1 0 46 7 5 27 7 5 48 7 6 11 4 0 21 8 5 54 3 1 26 2 1 30 1 0 6 3 1 13 1 0 24 3 1 33 3 1 16 37 29 20 chain 34651 chr19 58617616 + 19897352 19897814 LTR2 463 + 0 463 38252 222 0 5 8 5 0 125 37 38 65 chain 40851 chr19 58617616 + 19957700 19958689 LTR66 600 + 0 507 34057 185 0 1 140 462 0 86 4 0 58 17 0 37 chain 2534 chr19 58617616 + 19958163 19958196 LTR66 600 + 0 33 103473 33 chain 18173 chr19 58617616 + 19958196 19958426 LTR66 600 + 34 264 58488 230 chain 43220 chr19 58617616 + 19964290 19964935 LTR66 600 + 0 600 32634 118 6 4 215 71 0 75 4 0 46 0 32 110 chain 31330 chr19 58617616 + 19986794 19987141 L1PA3long 6157 + 5810 6157 40863 347 chain 24360 chr19 58617616 + 20034496 20034795 AluSp 311 + 0 303 50234 125 0 5 126 1 0 47 chain 39424 chr19 58617616 + 20045617 20046114 LTR10C 591 + 0 591 35058 106 0 72 208 0 20 104 0 1 4 14 15 61 chain 42579 chr19 58617616 + 20057135 20057632 MER9a3 513 + 2 511 33017 30 0 12 467 chain 35640 chr19 58617616 + 20059607 20060058 LTR7 482 + 0 482 37640 264 0 31 9 2 1 114 13 14 49 chain 12617 chr19 58617616 + 20065774 20065919 LTR66 600 + 0 145 65778 145 chain 41337 chr19 58617616 + 20066941 20067925 HERVL66-int 1251 + 155 908 33770 7 7 0 19 16 10 16 16 16 29 28 0 47 20 1 15 13 8 15 15 0 27 21 9 122 1 0 63 12 1 30 3 0 46 12 11 32 1 0 65 22 20 47 17 10 8 20 0 49 107 14 16 chain 28907 chr19 58617616 + 20069632 20069941 AluYb8 318 + 0 307 43472 132 2 0 175 chain 70714 chr19 58617616 + 20082341 20083300 LTR5_Hs 974 + 0 971 23824 13 0 4 437 5 9 163 10 9 25 0 1 13 3 5 37 0 2 58 7 7 34 6 0 11 0 6 137 chain 54558 chr19 58617616 + 20099766 20100381 HERV17-int 4347 + 3732 4347 28022 615 chain 118833 chr19 58617616 + 20137300 20138623 SVA_D 2077 + 57 2077 15738 495 0 1 41 0 40 32 1 2 16 0 117 115 1 539 622 chain 29348 chr19 58617616 + 20143874 20144184 AluYg6 310 + 0 310 42815 310 chain 46190 chr19 58617616 + 20153502 20154120 LTR66 600 + 0 600 30965 268 0 1 39 0 1 106 2 0 58 18 0 127 chain 292533 chr19 58617616 + 20154965 20159574 HERVH-int 3825 + 0 3825 7055 310 0 2 176 2 0 44 5 0 10 64 0 28 1 0 9 2 1 24 29 0 15 0 37 42 2 1 56 0 1 7 0 2 13 0 3 134 0 3 305 15 0 74 968 0 40 0 10 221 0 2 115 6 33 1292 0 2 84 28 238 377 0 3 111 chain 39948 chr19 58617616 + 20160833 20161284 LTR7 482 + 0 482 34699 261 0 31 190 chain 36496 chr19 58617616 + 20161911 20162980 HERVL66-int 1251 + 128 910 37080 24 83 39 37 56 28 36 150 76 130 1 0 58 16 5 29 3 0 50 6 5 34 1 0 50 28 26 57 53 26 40 107 12 20 chain 3184 chr19 58617616 + 20166319 20166356 LTR8 732 + 664 701 98035 37 chain 64384 chr19 58617616 + 20177875 20179473 LTR70 1284 + 292 1281 25330 5 0 1 42 621 1 82 13 18 86 0 4 339 23 24 59 1 2 88 0 2 52 37 37 59 1 0 43 1 0 40 1 0 5 chain 125087 chr19 58617616 + 20213862 20215311 SVA_D 2077 + 6 2075 14685 18 7 1 658 5 162 63 0 82 44 1 4 4 0 1 50 1 0 46 0 389 168 0 2 54 2 1 314 6 0 8 chain 161376 chr19 58617616 + 20228479 20230398 L1PA5 6144 + 3135 5514 11657 14 3 1 12 1 0 4 5 4 64 9 13 90 4 0 555 0 2 60 0 3 38 0 457 326 0 2 734 chain 19206 chr19 58617616 + 20238942 20239186 LTR66 600 + 155 401 57343 76 0 1 32 1 2 135 chain 40603 chr19 58617616 + 20257843 20258353 LTR6B 557 + 0 557 34221 22 0 27 23 0 15 257 0 1 9 0 1 140 0 1 4 0 1 34 0 1 21 chain 493090 chr19 58617616 + 20277596 20284974 HERVK-int 6823 + 19 6520 3342 19 5 4 20 7 6 6 1 0 26 1 0 18 1 0 15 2 0 33 0 5 131 1 0 4 0 1 6 9 10 100 0 2 30 1 0 200 11 9 24 1 0 19 1 0 8 97 1 205 0 3 95 6 5 61 0 1 113 3 4 195 1 0 58 1 0 273 1 8 9 0 1 80 18 12 135 0 1 192 1 0 1080 1 0 4 0 1 600 1 2 213 0 1 488 0 1 401 302 0 33 16 1 450 0 2 64 39 37 91 1 0 85 5 4 22 1 0 100 2 1 32 4 3 123 1 0 50 4 1 4 1 0 9 4 2 77 2 0 5 1 0 24 35 28 14 533 117 9 2 0 12 1 0 9 8 6 12 2 0 29 8 3 7 1 0 3 1 0 10 10 6 10 12 6 6 1 0 8 1 0 5 1 0 26 1 0 5 1 0 11 chain 28004 chr19 58617616 + 20284404 20284740 HERV-Fc1_LTR1 345 + 0 345 44859 229 3 13 38 1 0 65 chain 122826 chr19 58617616 + 20295767 20297222 SVA_D 2077 + 14 2070 15052 11 1 0 4 0 16 126 0 10 357 0 1 60 24 22 103 0 3 38 3 0 33 0 3 40 2 577 27 1 0 625 chain 21970 chr19 58617616 + 20344536 20344829 AluSq10 312 + 0 289 53878 108 5 4 162 3 0 15 chain 37154 chr19 58617616 + 20357298 20358811 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58617616 + 20466330 20467299 LTR5_Hs 974 + 0 974 21795 50 0 3 7 0 2 396 1 5 357 25 21 133 chain 493301 chr19 58617616 + 20482446 20488570 L1PA6 6164 + 0 6162 3337 178 1 2 47 44 36 246 0 1 467 1 2 311 0 1 4 1 0 260 6 7 318 0 1 453 7 5 220 0 18 505 0 4 22 5 4 77 1 2 364 13 22 127 1 0 191 2 0 56 1 2 228 0 1 227 1 3 237 1 0 472 0 1 44 0 1 27 0 1 120 8 15 74 1 0 428 0 3 327 chain 497824 chr19 58617616 + 20490329 20496190 L1PA4 6152 + 10 5735 3211 471 5 6 88 0 4 663 1 0 53 144 0 447 0 1 989 4 0 439 2 1 5 1 0 527 7 10 773 1 0 816 0 3 172 0 4 253 chain 39855 chr19 58617616 + 20538081 20538618 LTR10C 591 + 0 564 34769 38 5 9 9 0 4 67 8 7 4 0 1 222 0 2 103 1 3 13 0 14 12 0 2 16 5 4 34 chain 36323 chr19 58617616 + 20567439 20568544 HERVL66-int 1251 + 50 910 37195 7 1 0 13 2 1 14 13 11 11 80 48 7 7 0 19 16 10 22 1 2 38 28 7 39 20 1 17 13 8 13 61 34 96 8 24 4 1 0 63 12 1 30 7 4 46 5 4 34 1 0 68 21 19 44 56 29 40 108 13 19 chain 15823 chr19 58617616 + 20571112 20571306 LTR66 600 + 6 200 61254 194 chain 35650 chr19 58617616 + 20611050 20611575 LTR61 567 + 0 518 37633 22 3 0 33 20 14 45 0 1 71 7 5 29 16 13 113 0 5 124 0 1 42 chain 34720 chr19 58617616 + 20617557 20618125 LTR61 567 + 0 558 38213 22 14 11 22 17 11 49 0 1 75 2 0 18 4 0 20 13 7 104 25 30 82 0 4 19 0 1 82 chain 4579 chr19 58617616 + 20656233 20656305 L1PREC2 3366 + 2978 3048 87913 28 6 4 38 chain 40527 chr19 58617616 + 20662436 20663206 LTR66 600 + 0 600 34288 106 204 6 68 3 0 38 19 17 54 13 14 169 1 33 95 chain 88551 chr19 58617616 + 20677057 20678124 MER11C 1089 + 0 1072 19934 225 0 5 131 1 0 202 6 5 23 0 1 80 1 0 248 17 18 59 0 1 74 chain 71131 chr19 58617616 + 20692432 20693313 MER11D 897 + 0 897 23736 481 7 0 110 3 26 280 chain 39433 chr19 58617616 + 20713767 20714321 L1PA6 6164 + 5606 6162 35054 332 67 69 155 chain 36342 chr19 58617616 + 20768413 20768875 LTR2 463 + 0 463 37177 360 34 35 68 chain 67496 chr19 58617616 + 20786068 20787312 LTR70 1284 + 345 1283 24580 252 0 1 51 0 1 213 1 2 63 28 32 73 311 0 75 0 4 45 8 5 31 1 0 43 2 1 39 1 0 7 chain 533316 chr19 58617616 + 20807724 20813827 L1PA3long 6157 + 0 6157 1690 317 9 12 144 0 4 91 0 4 127 0 7 77 4 6 448 1 13 207 0 4 864 6 0 67 0 4 179 0 4 566 0 2 109 0 3 749 0 4 80 0 1 467 1 0 200 0 1 539 0 5 518 0 1 333 chain 7097 chr19 58617616 + 20826705 20826787 L1PA3long 6157 + 1499 1581 76509 82 chain 139219 chr19 58617616 + 20826787 20828460 L1PA3long 6157 + 2270 3946 13168 56 1 0 170 7 8 687 1 0 76 1 3 207 16 17 388 17 18 46 chain 76022 chr19 58617616 + 20828460 20829318 L1PA3long 6157 + 3947 4804 22564 296 2 1 560 chain 119458 chr19 58617616 + 20829323 20830668 L1PA3long 6157 + 4809 6153 15618 1089 1 0 255 chain 519320 chr19 58617616 + 20841021 20846966 L1PA4 6152 + 0 5968 2300 74 0 3 50 0 14 2348 1 0 266 0 1 759 1 2 839 0 4 1017 0 2 138 2 1 450 chain 7192 chr19 58617616 + 20852178 20852256 LTR10C 591 + 14 92 76968 78 chain 376946 chr19 58617616 + 20852269 20857638 L1PA6 6164 + 2 6162 5537 88 33 237 42 27 34 89 19 18 433 0 6 8 6 0 50 0 1 1240 30 30 53 1 2 193 0 2 176 3 0 75 0 1 405 3 0 63 1 2 145 0 12 295 0 3 505 1 0 12 627 1195 558 0 1 4 1 0 163 0 1 11 2 0 7 chain 40038 chr19 58617616 + 20857638 20858139 LTR10C 591 + 80 591 34627 99 0 1 9 0 2 5 1 0 41 0 6 267 0 2 79 chain 13775 chr19 58617616 + 20859662 20859816 L1PA6 6164 + 5817 5971 63915 154 chain 15770 chr19 58617616 + 20859823 20860007 L1PA6 6164 + 5976 6160 61323 184 chain 8620 chr19 58617616 + 20953536 20953629 L1PA2 6032 + 5939 6032 73409 93 chain 435384 chr19 58617616 + 20988512 20994614 L1PA8 5853 + 49 5853 4659 23 3 1 9 48 26 194 18 6 99 0 1 5 2 1 368 0 11 234 6 0 999 1 0 654 11 0 198 0 1 515 0 1 630 316 0 163 0 2 203 0 299 300 0 70 32 314 0 24 0 1 400 0 3 42 2 1 43 2 0 69 15 18 45 2 1 19 3 2 91 chain 8555 chr19 58617616 + 20999281 20999398 MER85 139 + 12 139 73552 76 1 11 40 chain 37087 chr19 58617616 + 21002381 21002840 LTR2 463 + 0 463 36686 377 9 10 28 0 4 22 1 0 22 chain 238239 chr19 58617616 + 21004524 21009375 Harlequin-int 5206 + 132 3383 8514 13 13 0 149 0 1 81 1 0 107 1 0 199 316 0 164 0 1 24 5 4 559 13 0 286 0 5 812 1651 388 59 0 1 398 chain 36452 chr19 58617616 + 21009375 21010042 HERVE_a-int 7009 + 6306 6942 36735 83 7 6 38 1 0 32 1 0 12 2 1 13 1 0 5 2 0 9 1 0 35 1 0 8 18 17 31 0 2 5 13 9 27 7 5 55 2 1 9 4 0 26 4 1 53 3 1 26 1 0 31 1 0 6 15 14 24 2 0 34 4 2 15 chain 12524 chr19 58617616 + 21011694 21012028 L1PB1 5432 + 5114 5413 65940 24 1 0 9 13 11 9 3 1 52 19 17 43 1 0 14 76 52 24 1 0 18 6 5 11 1 0 9 chain 3251 chr19 58617616 + 21027899 21027943 LTR23 429 + 359 408 97468 25 0 5 19 chain 41289 chr19 58617616 + 21128747 21129265 HERV1_LTRd 520 + 0 517 33790 54 1 0 8 1 0 75 1 7 215 7 2 156 chain 5418 chr19 58617616 + 21129271 21129337 MER57E3 465 + 248 314 83613 66 chain 24772 chr19 58617616 + 21145201 21145481 AluY 311 + 8 287 49630 163 1 0 116 chain 6991 chr19 58617616 + 21219858 21220036 L1MA3 4352 + 4179 4351 77636 82 36 32 13 30 28 17 chain 37047 chr19 58617616 + 21228162 21228625 MER9B 498 + 28 493 36709 107 0 1 257 5 6 5 1 0 40 0 1 48 chain 71167 chr19 58617616 + 21229657 21230616 MER11C 1089 + 0 1076 23724 55 1 92 112 0 3 184 0 1 124 27 28 176 14 33 81 0 1 150 0 1 35 chain 49783 chr19 58617616 + 21236760 21237345 LTR10C 591 + 0 591 29645 47 0 4 457 0 2 81 chain 36763 chr19 58617616 + 21263789 21264277 LTR15 485 + 0 485 36913 27 0 2 145 5 4 4 0 1 98 7 11 60 7 1 84 3 0 48 chain 4537 chr19 58617616 + 21264453 21264507 SVA_F 1814 + 435 489 88123 54 chain 14982 chr19 58617616 + 21269202 21269383 MER57E3 465 + 268 449 62287 181 chain 114126 chr19 58617616 + 21325046 21326641 L1PB1 5432 + 3793 5370 16538 161 0 3 27 0 1 632 3 4 406 19 20 5 1 0 51 1 2 9 3 0 24 0 2 7 17 12 10 5 3 48 15 17 44 1 0 15 3 0 7 14 5 19 8 5 12 2 0 26 chain 11978 chr19 58617616 + 21328642 21328796 MER57E3 465 + 272 425 66873 52 1 0 101 chain 5744 chr19 58617616 + 21370638 21370713 LTR23 429 + 354 429 82157 75 chain 51484 chr19 58617616 + 21389641 21390329 LTR12 884 + 0 861 29054 25 1 0 33 1 42 219 0 25 30 4 2 67 2 1 104 0 103 101 2 10 99 chain 2507 chr19 58617616 + 21396676 21396721 MER33 330 + 250 294 103613 9 2 0 23 1 0 4 0 2 6 chain 50657 chr19 58617616 + 21522916 21523773 LTR70 1284 + 492 1271 29324 34 0 6 36 32 37 186 3 0 68 0 1 6 1 0 30 3 0 5 78 0 227 1 0 4 0 1 18 2 0 6 1 0 36 2 1 32 11 10 35 chain 13116 chr19 58617616 + 21567551 21567736 MER57E3 465 + 268 449 64904 34 9 4 130 0 1 12 chain 75384 chr19 58617616 + 21567941 21568911 LTR5_Hs 974 + 0 974 22748 50 5 4 115 1 0 120 0 1 177 0 1 188 1 0 168 3 10 31 8 6 103 chain 42800 chr19 58617616 + 21588570 21589080 MER9a1 513 + 0 513 32888 39 1 0 4 0 1 410 0 2 34 0 1 22 chain 16243 chr19 58617616 + 21589080 21589273 AluSc 308 + 96 288 60696 35 1 0 157 chain 38948 chr19 58617616 + 21602857 21603325 LTR15 485 + 0 484 35395 148 1 4 12 0 11 83 0 1 147 0 1 49 0 1 23 1 0 4 chain 37452 chr19 58617616 + 21612185 21612649 LTR15 485 + 0 485 36437 57 0 18 73 1 4 300 10 11 17 1 0 5 chain 95351 chr19 58617616 + 21614309 21615519 SVA_F 1814 + 0 1794 18860 149 10 0 341 0 40 126 5 86 45 0 456 109 6 5 72 1 3 330 0 16 16 chain 32204 chr19 58617616 + 21621660 21622101 LTR22A 463 + 23 463 40185 313 38 37 90 chain 66010 chr19 58617616 + 21624247 21625081 HERVK22-int 3844 + 6 849 24956 34 3 0 512 27 34 157 0 5 101 chain 6307 chr19 58617616 + 21627353 21627433 LTR3B_ 500 + 0 80 79974 11 0 1 4 1 0 64 chain 32413 chr19 58617616 + 21627433 21627840 LTR3 431 + 0 410 40031 402 0 3 5 chain 40221 chr19 58617616 + 21629384 21629873 LTR17 781 + 286 774 34508 41 1 0 447 chain 194393 chr19 58617616 + 21631577 21633932 HERV17-int 4347 + 13 2373 9909 14 1 0 50 2 1 34 2 0 27 1 0 204 0 1 144 0 1 4 1 0 60 17 0 15 0 11 798 0 1 63 0 1 21 8 6 127 0 2 517 0 1 169 0 12 76 chain 28426 chr19 58617616 + 21634456 21634782 LTR17 781 + 0 326 44228 326 chain 141585 chr19 58617616 + 21681383 21682943 L1PA3long 6157 + 4592 6157 12972 714 0 1 797 0 4 49 chain 116459 chr19 58617616 + 21707377 21708694 SVA_C 1631 + 59 1618 16143 544 0 156 78 0 88 20 2 5 52 3 0 16 1 0 25 1 0 575 chain 174998 chr19 58617616 + 21720381 21722724 SVA_E 1901 + 5 1901 10835 148 1 0 664 1 0 26 1 0 80 447 0 35 2 1 559 0 5 364 1 0 14 chain 18362 chr19 58617616 + 21721302 21721681 SVA_E 1901 + 969 1304 40589 5 1 0 41 7 13 67 1 0 44 48 0 165 chain 2665 chr19 58617616 + 21721485 21721514 SVA_E 1901 + 1107 1136 100496 29 chain 17253 chr19 58617616 + 21735521 21735774 L1PA10 4194 + 1624 1925 59520 32 6 8 64 4 8 133 0 42 14 chain 97234 chr19 58617616 + 21754393 21756038 L1PA8A 6298 + 4083 6289 18630 14 0 5 41 0 844 78 0 4 91 3 2 15 16 0 27 2 9 57 0 1 51 1 0 21 0 5 23 1 0 116 1 6 25 0 2 50 0 2 5 306 3 53 0 1 44 0 3 110 0 1 362 12 13 80 1 3 39 chain 133533 chr19 58617616 + 21775159 21776664 SVA_D 2077 + 6 2077 13689 21 6 0 583 13 11 140 0 40 77 0 535 32 1 0 632 chain 4398 chr19 58617616 + 21838852 21838902 MER41B 635 + 87 138 88898 41 0 1 9 chain 26966 chr19 58617616 + 21918586 21918995 LTR7B 505 + 0 490 46313 108 1 11 52 25 37 18 6 26 5 0 1 53 0 41 89 14 13 26 2 0 10 chain 493832 chr19 58617616 + 21977279 21983992 L1PA7 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0 85 0 1 246 0 1 67 1 0 39 0 2 95 1 2 145 0 1 117 0 1 745 0 1 83 0 2 246 0 1 174 0 3 268 0 1 178 0 5 168 4 0 7 1 2 321 1 0 702 0 1 134 0 2 17 0 2 591 0 10 54 chain 6112 chr19 58617616 + 22163160 22163235 LTR25 836 + 9 84 80688 75 chain 391918 chr19 58617616 + 22184882 22190166 L1PA8 5853 + 197 5489 5294 104 8 12 137 10 11 82 0 1 25 24 24 219 10 4 37 17 9 5 0 1 322 0 2 327 3 4 195 2 0 605 4 15 20 6 8 327 11 11 87 6 10 64 0 2 21 1 0 18 13 9 304 15 16 12 4 6 22 0 5 152 0 1 4 1 0 205 7 8 103 0 1 300 0 8 308 13 11 329 0 6 7 24 4 279 1 0 3 2 0 194 4 5 281 chain 33093 chr19 58617616 + 22196119 22196533 LTR3 431 + 0 416 39444 250 0 1 88 5 6 71 chain 10421 chr19 58617616 + 22214618 22214752 MER57E3 465 + 129 264 69574 44 0 1 90 chain 279214 chr19 58617616 + 22227078 22230506 L1PA7 6471 + 3024 6468 7447 120 0 1 339 1 2 4 1 0 192 8 9 45 6 8 212 1 4 24 1 2 275 1 0 75 0 1 507 0 1 89 10 14 248 1 0 424 1 4 160 0 1 683 chain 27660 chr19 58617616 + 22274741 22275128 L1PA10 4194 + 2640 3020 45382 10 1 0 73 0 4 185 2 4 42 12 0 62 chain 71940 chr19 58617616 + 22283561 22284503 LTR5_Hs 974 + 0 974 23560 109 11 19 41 1 0 57 0 19 40 0 1 181 0 1 188 1 0 163 8 15 17 22 20 103 chain 8762 chr19 58617616 + 22393470 22393569 L1PA6 6164 + 4790 4889 73076 99 chain 98628 chr19 58617616 + 22393570 22394709 L1PA6 6164 + 4889 6028 18461 1139 chain 6095 chr19 58617616 + 22394716 22394792 L1PA6 6164 + 6078 6154 80748 76 chain 117181 chr19 58617616 + 22408099 22409629 L1PA8A 6298 + 3982 5518 16026 208 4 5 38 0 1 4 1 0 13 0 2 304 11 16 19 0 2 26 0 1 4 1 0 201 4 1 662 2 1 28 chain 61164 chr19 58617616 + 22448972 22449764 LTR70 1284 + 9 930 26068 400 0 5 56 3 110 214 1 30 35 0 1 11 14 1 58 chain 28959 chr19 58617616 + 22522536 22522924 LTR2 463 + 0 463 43393 161 5 78 104 0 1 16 18 19 84 chain 34196 chr19 58617616 + 22524806 22525363 LTR61 567 + 0 558 38568 22 25 19 14 17 11 20 3 1 52 12 17 34 2 1 18 0 5 8 10 14 125 0 5 147 3 0 45 chain 47083 chr19 58617616 + 22550914 22551459 L1PA7 6471 + 5774 6319 30618 545 chain 15156 chr19 58617616 + 22555367 22555592 L1PA8 5853 + 5632 5853 62088 45 5 4 12 1 0 46 6 5 16 1 0 93 chain 8183 chr19 58617616 + 22568181 22568269 LTR5_Hs 974 + 0 88 74454 88 chain 43928 chr19 58617616 + 22568269 22568751 LTR7 482 + 0 482 32179 482 chain 282292 chr19 58617616 + 22568753 22572279 HERVH-int 3825 + 0 3825 7368 484 0 56 30 1 0 10 1 0 19 1 0 5 28 0 15 0 37 42 2 1 56 1 2 6 0 2 13 0 3 52 0 3 244 1 0 143 15 0 63 0 1 4 1 0 385 13 40 585 0 1 487 13 48 10 35 0 195 14 18 60 8 218 11 3 0 8 4 10 458 chain 43329 chr19 58617616 + 22574537 22575011 LTR7 482 + 0 473 32544 233 1 0 240 chain 70186 chr19 58617616 + 22575021 22575897 LTR5_Hs 974 + 82 974 23956 74 0 2 130 0 1 530 8 15 37 2 0 22 1 9 72 chain 305848 chr19 58617616 + 22575897 22579933 HERVK-int 6823 + 0 6520 6697 5 1 0 13 1 0 4 1 0 20 1 0 19 1 0 39 1 0 44 12 0 73 3 0 238 1 0 205 2 0 28 1 0 19 1 0 271 0 6 34 1 0 441 1 0 178 1 2 34 0 1 110 0 1 42 20 14 165 1 0 669 0 2255 575 0 288 54 2 1 36 1 0 124 1 0 49 3 0 5 1 0 6 1 0 7 1 0 71 3 1 7 1 0 24 17 11 11 1 0 20 130 142 10 3 1 12 2 0 29 8 3 7 1 0 3 1 0 10 31 21 7 1 0 7 3 2 4 1 0 26 1 0 4 1 0 12 chain 84074 chr19 58617616 + 22580791 22581759 LTR5_Hs 974 + 0 974 20789 288 0 1 535 0 7 40 2 0 103 chain 493669 chr19 58617616 + 22671703 22678329 L1PA5 6144 + 0 6135 3319 71 1 0 49 0 14 334 7 11 63 1 0 269 0 17 32 0 27 128 1 0 140 0 3 11 10 1 111 0 1 126 1 6 54 1 2 198 0 4 157 316 9 279 0 8 184 1 0 217 0 3 23 7 11 343 0 1 173 327 0 84 1 0 5 2 1 75 0 4 10 0 10 398 0 4 19 0 1 202 0 1 95 0 3 231 1 14 57 1 6 47 0 4 918 3 7 310 1 17 253 0 1 131 0 7 6 7 0 134 chain 8683 chr19 58617616 + 22678337 22678447 L1PA5 6144 + 5473 5584 73252 50 3 4 57 chain 45204 chr19 58617616 + 22678448 22678996 L1PA5 6144 + 5584 6132 31474 548 chain 12697 chr19 58617616 + 22679015 22679160 L1PA5 6144 + 5469 5614 65620 145 chain 36862 chr19 58617616 + 22679160 22679600 L1PA5 6144 + 5630 6070 36838 440 chain 62984 chr19 58617616 + 22733989 22734940 MER11C 1089 + 0 1059 25630 49 23 114 84 7 16 54 6 10 59 1 0 138 0 2 8 66 65 91 1 5 4 1 0 38 0 1 182 1 0 117 0 1 21 chain 40289 chr19 58617616 + 22745404 22745895 LTR17 781 + 259 772 34453 68 1 0 170 0 1 197 4 26 51 chain 317505 chr19 58617616 + 22747576 22751434 HERV17-int 4347 + 41 4347 6459 37 1 0 35 2 0 19 8 7 30 0 2 99 2 1 64 17 447 680 6 5 10 4 7 46 5 6 4 1 0 307 0 6 258 0 4 149 0 3 163 5 0 478 1 0 86 0 4 518 4 5 357 0 3 220 1 3 21 0 2 220 chain 28592 chr19 58617616 + 22751748 22752074 LTR17 781 + 0 326 43972 326 chain 257022 chr19 58617616 + 22761334 22765460 L1PB1 5432 + 1658 5409 8059 205 4 5 177 0 1 50 0 1 280 13 14 59 15 14 31 1 20 11 0 10 13 34 0 37 0 4 100 2 0 5 1 3 143 21 21 241 6 9 455 11 13 114 0 1 25 4 1 12 0 6 98 8 10 319 0 1 54 333 7 139 0 5 90 43 4 44 1 5 128 4 5 155 17 13 98 0 1 99 4 6 11 15 16 5 1 0 51 3 2 9 1 0 24 1 0 8 1 0 12 30 24 38 2 1 16 1 0 44 1 0 15 1 0 4 62 46 24 1 0 21 1 0 13 1 0 5 chain 18145 chr19 58617616 + 22774967 22775421 L1PREC2 3366 + 2626 3044 58516 24 6 7 95 2 0 54 1 0 36 168 136 28 8 6 32 chain 20067 chr19 58617616 + 22777928 22778155 L1PA5 6144 + 5899 6126 56298 227 chain 21237 chr19 58617616 + 22783321 22783593 MER57E3 465 + 144 417 54835 58 1 2 213 chain 63443 chr19 58617616 + 22841164 22842000 LTR70 1284 + 9 967 25535 50 6 5 380 0 2 26 0 107 216 0 29 38 2 0 9 14 1 95 chain 133947 chr19 58617616 + 22925549 22928606 SVA_F 1814 + 335 1814 13662 545 3 0 34 49 0 33 986 15 170 0 1 49 556 0 632 chain 3422 chr19 58617616 + 22926131 22926168 SVA_F 1814 + 978 1015 82201 37 chain 13310 chr19 58617616 + 22926213 22926394 SVA_F 1814 + 1012 1143 45481 103 50 0 28 chain 2147 chr19 58617616 + 22926316 22926339 SVA_F 1814 + 924 947 87942 23 chain 2383 chr19 58617616 + 22926341 22926366 SVA_F 1814 + 1139 1164 77111 25 chain 6108 chr19 58617616 + 22926394 22926598 SVA_F 1814 + 967 1171 43771 204 chain 25549 chr19 58617616 + 22926609 22926918 SVA_F 1814 + 893 1213 48405 54 0 15 39 2 0 4 1 0 127 0 1 37 1 0 16 2 1 26 chain 5268 chr19 58617616 + 22926918 22926980 SVA_F 1814 + 924 1002 68225 12 0 1 11 0 15 39 chain 5388 chr19 58617616 + 22926991 22927052 SVA_F 1814 + 1186 1247 71780 61 chain 1449 chr19 58617616 + 22927147 22927199 SVA_F 1814 + 1037 1089 57692 52 chain 2479 chr19 58617616 + 22927436 22927463 SVA_F 1814 + 861 888 81195 27 chain 6323 chr19 58617616 + 22927463 22927561 SVA_F 1814 + 1001 1098 67880 10 1 0 87 chain 8710 chr19 58617616 + 22927647 22927740 SVA_F 1814 + 1181 1274 73191 93 chain 11483 chr19 58617616 + 22927786 22927969 SVA_F 1814 + 855 1002 67770 43 1 0 50 49 14 40 chain 2698 chr19 58617616 + 22927880 22927910 SVA_F 1814 + 1188 1219 74453 26 0 1 4 chain 45463 chr19 58617616 + 22930621 22931122 L1PA4 6152 + 5650 6152 31330 213 0 1 288 chain 3467 chr19 58617616 + 22944098 22944137 LTR25 836 + 401 440 95476 39 chain 510052 chr19 58617616 + 22949520 22955659 L1PA6 6164 + 0 6156 2766 190 5 6 4 1 0 369 1 0 596 1 0 281 1 0 273 0 1 361 0 2 241 1 3 535 0 3 171 0 1 152 0 1 26 1 0 5 6 8 166 0 1 1044 3 4 4 1 0 346 4 5 364 0 1 636 2 1 335 0 7 13 chain 6105 chr19 58617616 + 22957605 22957722 LTR25-int 2185 + 1789 1902 80710 11 2 0 22 16 15 52 1 0 13 chain 4761 chr19 58617616 + 22960444 22960500 L1MA8 2339 + 1853 1909 86907 56 chain 436619 chr19 58617616 + 22978499 22984012 L1PA7 6471 + 941 6467 4634 132 5 6 192 11 12 199 4 1 276 1 0 275 0 1 27 8 10 99 0 1 87 0 2 228 1 0 30 0 2 120 22 1 454 0 4 69 0 3 312 1 2 4 1 0 13 8 0 41 0 1 5 1 0 34 0 3 234 7 9 6 1 0 114 7 9 45 7 6 181 1 0 349 0 7 122 0 8 228 7 8 43 0 5 37 0 5 49 7 0 217 0 1 179 0 1 176 0 1 71 0 2 59 0 1 463 2 3 241 chain 22766 chr19 58617616 + 23002321 23002637 MER57E3 465 + 130 449 52726 42 0 2 155 19 20 100 chain 70767 chr19 58617616 + 23077743 23078765 LTR5_Hs 974 + 0 974 23812 13 0 4 228 0 1 212 1 5 39 69 6 100 22 24 27 0 1 14 3 5 92 13 12 72 0 2 117 chain 122964 chr19 58617616 + 23089748 23091943 THE1A-int 1579 + 0 1574 15031 37 7 5 159 2 1 5 308 0 34 7 11 11 3 6 36 0 1 350 319 0 15 1 0 330 0 2 515 1 0 5 0 1 50 chain 6296 chr19 58617616 + 23130010 23130088 THE1B-int 1605 + 1526 1605 80019 59 0 1 19 chain 78531 chr19 58617616 + 23134345 23135240 SVA_E 1901 + 886 1901 21973 14 0 33 59 26 113 116 0 1 38 2 1 640 chain 75178 chr19 58617616 + 23167743 23168786 MER11C 1089 + 0 1063 22802 247 7 16 50 0 4 69 2 1 35 0 1 111 45 44 112 15 18 29 0 1 82 0 3 40 0 1 4 1 0 169 0 1 25 chain 41034 chr19 58617616 + 23170520 23171109 LTR61 567 + 0 558 33946 17 12 0 38 17 11 19 6 0 107 5 0 30 1 2 135 5 0 10 8 13 136 3 0 40 chain 123993 chr19 58617616 + 23172574 23174034 SVA_C 1631 + 41 1631 14852 173 0 1 18 0 1 447 15 18 21 3 0 117 0 134 31 2 0 5 2 1 10 1 0 233 3 1 379 chain 52353 chr19 58617616 + 23186831 23187506 HERVH-int 3825 + 3160 3825 28774 373 9 13 20 17 1 33 0 2 223 chain 40478 chr19 58617616 + 23200236 23200696 LTR2 463 + 0 463 34322 127 0 3 333 chain 23202 chr19 58617616 + 23275226 23275504 AluSc5 308 + 29 307 52079 278 chain 35165 chr19 58617616 + 23285322 23285810 MER9a3 513 + 0 513 37915 18 0 2 91 0 1 67 8 9 70 0 17 146 0 1 7 11 14 70 chain 68465 chr19 58617616 + 23345268 23346593 HERVH48-int 3304 + 188 1388 24343 11 9 7 20 2 0 32 7 1 5 1 0 12 2 1 9 11 6 4 1 0 66 6 2 8 1 0 27 1 0 42 4 3 14 34 22 52 0 1 19 1 0 7 12 11 30 36 6 20 8 0 3 1 0 17 4 0 17 1 0 4 3 1 67 3 1 38 0 1 4 2 0 27 7 6 64 48 40 54 1 0 41 1 0 11 1 0 20 1 0 13 2 0 35 6 1 19 2 0 6 2 1 16 1 0 20 2 0 42 3 0 10 11 5 121 2 1 11 1 0 9 1 0 36 chain 257716 chr19 58617616 + 23352568 23356181 L1PB1 5432 + 1419 4978 8037 179 0 5 374 14 15 322 5 7 48 11 13 64 2 1 52 0 1 8 0 1 16 6 7 50 0 5 299 0 3 200 34 10 221 4 0 206 3 5 197 6 15 121 3 5 269 0 5 74 4 5 5 0 1 39 0 3 34 8 7 74 2 0 18 0 1 171 54 5 133 7 8 81 11 13 63 32 11 89 chain 63075 chr19 58617616 + 23369334 23370018 SVA_C 1631 + 943 1628 25607 60 0 1 624 chain 4964 chr19 58617616 + 23397450 23397509 LTR10A 586 + 205 264 85831 59 chain 141925 chr19 58617616 + 23418637 23420253 SVA_C 1631 + 18 1631 12943 8 2 0 539 1 2 436 1 2 102 1 0 69 9 0 122 0 7 326 chain 2938 chr19 58617616 + 23500735 23501022 L1MB2 1706 + 1372 1658 100513 30 235 234 22 chain 6115 chr19 58617616 + 23520106 23520203 MER41B 635 + 27 128 80682 14 5 6 33 4 7 41 chain 36867 chr19 58617616 + 23532078 23532578 MER9B 498 + 8 498 36834 145 12 11 141 7 0 105 1 0 17 1 0 71 chain 324674 chr19 58617616 + 23534968 23540165 HERVK9-int 4720 + 334 4690 6320 195 1 0 4 0 1 313 0 1 131 5 6 269 1 0 23 0 21 336 0 1 27 0 3 624 0 1 645 0 3 229 5 8 133 2 0 27 7 5 198 6 17 216 8 17 597 1061 176 51 0 4 67 9 0 7 chain 31956 chr19 58617616 + 23540195 23540661 MER9B 498 + 8 493 40374 145 21 20 20 0 1 113 0 17 48 5 7 31 1 0 4 9 7 37 0 3 32 chain 63009 chr19 58617616 + 23557030 23557849 HERVK22-int 3844 + 2054 2927 25623 29 0 3 338 0 44 187 0 5 104 0 1 87 11 12 63 chain 89181 chr19 58617616 + 23567901 23568964 SVA_A 1864 + 28 1855 19825 259 1 0 134 0 747 345 0 3 98 0 13 186 0 2 40 chain 84451 chr19 58617616 + 23571693 23572699 LTR13 1007 + 0 1007 20724 381 4 5 570 5 7 6 2 0 38 chain 116477 chr19 58617616 + 23594136 23595462 SVA_D 2077 + 12 1816 16135 555 0 40 309 6 43 33 0 1 6 1 403 48 1 0 80 1 0 286 chain 531053 chr19 58617616 + 23613435 23619660 L1PA5 6144 + 3 6141 1787 132 6 20 316 7 8 381 0 1 583 0 4 1004 5 0 388 1 0 324 2 1 109 100 0 184 0 1 1199 1 0 211 0 1 365 0 1 57 0 1 79 0 1 761 4 0 6 chain 235216 chr19 58617616 + 23635932 23639380 L1PB1 5432 + 1980 5420 8591 318 36 36 21 0 2 18 0 4 14 16 7 7 0 9 84 4 1 127 0 5 209 1 0 97 23 15 59 9 0 73 3 0 5 0 3 6 1 0 4 0 9 47 1 2 315 0 4 34 1 0 214 2 4 214 4 6 337 6 1 64 10 25 29 4 5 36 0 1 57 0 1 36 0 1 63 17 12 86 1 0 260 0 4 79 5 12 17 1 4 20 36 31 12 2 1 10 5 1 9 2 0 53 2 1 16 1 0 34 10 9 14 27 14 19 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 10799 chr19 58617616 + 23673674 23673837 L1PA8 5853 + 5691 5853 68863 49 2 1 10 10 10 92 chain 68474 chr19 58617616 + 23692687 23693586 LTR5_Hs 974 + 0 974 24341 169 1 0 120 0 1 123 0 72 82 0 1 4 1 0 84 1 0 35 1 0 125 11 18 19 20 18 103 chain 30513 chr19 58617616 + 23700570 23701020 MER41C 542 + 65 542 41554 189 0 4 52 5 26 19 38 40 147 chain 78413 chr19 58617616 + 23718560 23719642 MER11C 1089 + 0 1063 22000 250 13 14 49 1 5 38 4 0 66 7 5 22 28 4 79 7 35 9 27 0 114 0 4 5 1 0 38 0 1 127 0 1 197 chain 40920 chr19 58617616 + 23736856 23737361 MER9a1 513 + 0 509 34018 219 0 2 194 2 5 4 1 0 85 chain 34229 chr19 58617616 + 23748261 23748658 LTR3 431 + 19 416 38542 397 chain 39586 chr19 58617616 + 23800339 23801237 LTR70 1284 + 302 899 34965 22 0 2 14 2 0 5 0 2 5 4 5 10 1 12 199 311 0 195 1 3 73 36 30 20 chain 18493 chr19 58617616 + 23864828 23865056 LTR3 431 + 202 431 58113 112 0 1 116 chain 32213 chr19 58617616 + 23870798 23871187 LTR3 431 + 0 390 40172 307 0 1 82 chain 35911 chr19 58617616 + 23904371 23904864 MER9a3 513 + 0 513 37468 18 0 2 91 0 1 52 2 1 91 5 4 14 4 22 137 2 3 77 chain 38517 chr19 58617616 + 23947082 23947517 HERV17-int 4347 + 3913 4347 35696 132 1 0 302 chain 28858 chr19 58617616 + 23947826 23948150 LTR17 781 + 0 326 43537 307 0 2 17 chain 96233 chr19 58617616 + 23963427 23965133 SVA_A 1864 + 20 1864 18745 22 5 0 16 3 0 5 0 3 30 0 11 61 11 9 423 0 187 51 10 8 4 1 0 36 41 0 14 13 10 35 293 268 31 21 55 20 37 0 26 0 16 483 0 6 14 chain 130594 chr19 58617616 + 24041132 24042696 LTR12C 1709 + 0 1707 13969 78 1 2 21 8 7 7 0 1 193 0 1 4 1 0 498 0 40 259 1 0 5 3 1 107 0 4 212 0 101 166 chain 10085 chr19 58617616 + 24082679 24082818 MER4E1 777 + 600 744 70226 19 3 8 117 chain 258981 chr19 58617616 + 24112740 24115684 L1PA3long 6157 + 3204 6157 7998 130 1 0 508 8 4 60 0 1 448 0 8 947 0 4 618 0 1 224 chain 71775 chr19 58617616 + 24176405 24177226 L1PA4 6152 + 4671 5493 23601 630 1 2 190 chain 80842 chr19 58617616 + 24198749 24207451 L1PA4 6152 + 3950 6143 21463 678 1506 0 672 1 2 35 5079 74 590 0 1 141 chain 12721 chr19 58617616 + 24202749 24202903 MER11D 897 + 0 154 65576 154 chain 426145 chr19 58617616 + 24231652 24236728 L1PA4 6152 + 6 5493 4796 77 7 412 380 5 10 351 1 0 215 0 4 924 7 5 5 0 3 802 9 10 993 3 0 468 1 0 458 1 2 5 1 0 363 chain 67432 chr19 58617616 + 24242676 24243588 MER11B 1079 + 1 961 24590 26 17 10 211 0 31 37 1 18 203 0 1 4 1 0 70 0 1 7 5 11 330 chain 62115 chr19 58617616 + 24246932 24247848 HERVK11-int 2540 + 1218 2098 25840 8 1 0 22 17 6 28 33 13 421 19 15 104 2 1 76 0 1 50 0 1 61 6 5 68 chain 87916 chr19 58617616 + 24249290 24250286 L1PA3long 6157 + 5158 6155 20064 360 0 1 636 chain 51161 chr19 58617616 + 24280612 24281276 L1PA4 6152 + 5469 6143 29177 215 0 2 5 2 0 81 0 10 361 chain 10825 chr19 58617616 + 24321898 24322215 HERVK11-int 2540 + 678 941 68816 59 5 0 14 22 15 6 2 0 21 77 41 41 8 5 10 17 16 35 chain 17915 chr19 58617616 + 24325720 24325944 MER11B 1079 + 832 1057 58741 201 0 1 23 chain 79508 chr19 58617616 + 24371391 24372462 MER11C 1089 + 0 1075 21741 220 0 5 62 1 2 91 5 6 36 25 31 241 11 1 176 0 1 203 chain 520540 chr19 58617616 + 24394039 24399943 L1PA2 6032 + 1 6012 2253 852 0 1 398 0 1 1275 0 106 2421 3 1 250 1 2 387 0 1 170 5 0 7 0 6 74 3 1 58 chain 151209 chr19 58617616 + 27255397 27257119 L1PA3long 6157 + 4430 6151 12274 799 1 0 4 0 1 73 1 0 844 chain 51585 chr19 58617616 + 27270809 27271401 L1PA3long 6157 + 5565 6157 29001 592 chain 52064 chr19 58617616 + 27272604 27273197 L1PA2 6032 + 5437 6027 28860 582 3 0 8 chain 169015 chr19 58617616 + 27296139 27320945 L1PA3long 6157 + 2956 6149 11154 764 0 1 577 22322 704 323 1 2 261 0 1 395 1 3 162 chain 462092 chr19 58617616 + 27324371 27330069 L1PA3long 6157 + 444 5886 4073 59 0 1 354 10 0 152 0 1 160 11 12 237 1 0 23 3 0 6 5 14 902 0 1 403 0 1 400 1 2 58 0 1 1085 258 0 1570 chain 14192 chr19 58617616 + 27328332 27328485 L1PA3long 6157 - 3048 3201 63331 153 chain 78975 chr19 58617616 + 27371139 27372077 L1PA3long 6157 + 4296 5233 21880 933 1 0 4 chain 78542 chr19 58617616 + 27372077 27372994 L1PA3long 6157 + 5234 6157 21967 754 3 4 24 0 4 119 0 1 17 chain 2338 chr19 58617616 + 27417847 27417872 L1PA3long 6157 + 4616 4641 104511 25 chain 133288 chr19 58617616 + 27417873 27419388 L1PA3long 6157 + 4641 6156 13718 1515 chain 45636 chr19 58617616 + 27427347 27427861 L1PA3long 6157 + 3695 4209 31244 514 chain 55045 chr19 58617616 + 27427863 27428466 L1PA3long 6157 + 4209 4812 27859 603 chain 382676 chr19 58617616 + 27463508 27468924 L1PA4 6152 + 663 5348 5433 72 11 12 347 10 11 328 1 0 214 0 17 52 1 0 250 1 0 720 1 2 138 769 12 579 1 5 518 0 1 384 0 3 416 0 1 4 12 11 541 0 1 46 chain 63646 chr19 58617616 + 27465659 27466404 L1PA3long 6157 + 5411 6157 25492 592 22 22 85 0 1 46 chain 49695 chr19 58617616 + 27498996 27499578 L1PA3long 6157 + 5570 6156 29688 429 1 4 11 0 1 141 chain 224096 chr19 58617616 + 27501951 27504573 L1PA4 6152 + 2531 5147 8926 479 0 9 934 0 1 137 0 2 255 0 4 425 22 0 370 chain 147006 chr19 58617616 + 27598223 27599955 L1P1 4361 + 2593 4328 12541 67 1 0 592 0 5 480 0 1 412 1 0 155 1 0 23 chain 102891 chr19 58617616 + 27789334 27790469 L1PA3long 6157 + 5018 6157 17965 173 0 1 566 0 3 396 chain 71485 chr19 58617616 + 27799322 27800356 MER11C 1089 + 9 1063 23657 238 0 9 59 8 12 172 8 10 24 46 45 112 1 5 4 1 0 38 0 1 127 7 8 47 34 33 40 0 2 68 chain 124082 chr19 58617616 + 27819332 27820730 L1PA4 6152 + 4747 6146 14833 554 7 5 447 0 3 34 0 1 208 1 0 147 chain 8971 chr19 58617616 + 27840871 27840981 MER4A1 472 + 0 111 72628 39 0 1 71 chain 496446 chr19 58617616 + 27852702 27858828 L1PA6 6164 + 0 6161 3251 403 1 0 106 2 1 112 0 1 164 0 17 627 0 5 10 1 0 44 0 1 58 0 1 849 0 4 50 0 9 333 0 4 384 1 2 11 0 1 18 0 1 703 17 18 68 0 3 199 0 1 65 0 3 327 0 1 6 1 0 69 1 0 194 0 1 174 1 0 265 1 2 263 0 1 253 2 1 171 16 17 54 27 13 66 2 0 7 chain 70506 chr19 58617616 + 27944130 27945329 MER11A 1151 + 0 1147 23866 54 2 101 23 13 5 46 1 0 65 4 0 31 161 0 115 5 6 68 0 1 23 0 1 27 0 1 107 1 0 4 0 1 4 5 7 131 10 43 19 18 0 37 0 1 60 6 7 159 chain 445809 chr19 58617616 + 28051091 28057428 L1PA7 6471 + 531 6363 4461 35 2 3 144 0 113 28 1 6 127 13 12 120 0 3 140 0 40 495 0 1 340 1 0 100 0 1 249 0 6 39 10 24 72 0 1 186 699 2 282 0 4 160 1 2 47 0 1 376 0 1 145 1 0 110 1 0 63 3 0 502 7 8 55 0 1 374 1 0 103 0 5 191 1 8 336 7 11 19 10 8 70 0 2 195 25 0 242 0 1 82 6 20 121 chain 58194 chr19 58617616 + 28053207 28053852 L1PA2 6032 + 5374 6019 26903 492 5 0 7 1 6 140 chain 12856 chr19 58617616 + 28071593 28071741 L1PA3long 6157 + 6012 6157 65339 6 3 0 139 chain 373742 chr19 58617616 + 28087656 28091957 L1P1 4361 + 1 4315 5591 537 0 1 307 2 1 122 1 2 254 5 7 1456 0 5 15 0 1 778 0 4 112 0 2 546 1 0 154 1 0 10 chain 77188 chr19 58617616 + 28130629 28131598 LTR5_Hs 974 + 0 974 22266 288 0 1 167 15 14 352 5 12 31 8 6 103 chain 510190 chr19 58617616 + 28177584 28183373 L1PA3long 6157 + 0 5908 2759 153 1 2 397 0 1 215 8 136 24 0 1 120 0 2 1500 15 7 2485 0 1 12 7 0 852 chain 29403 chr19 58617616 + 28192920 28193388 MER4A1 472 + 0 462 42732 117 11 10 14 8 6 47 9 11 34 11 3 10 10 11 135 2 4 60 chain 82178 chr19 58617616 + 28205419 28206346 L1PA6 6164 + 4250 5181 21206 115 0 4 812 chain 534848 chr19 58617616 + 28269708 28275728 L1PA3long 6157 + 0 6156 1628 151 0 1 615 12 140 2054 0 3 23 0 1 706 1 2 306 0 3 200 0 1 840 0 1 531 4 0 421 4 5 152 chain 40106 chr19 58617616 + 28310915 28311364 L1PA5 6144 + 5681 6129 34588 4 1 0 444 chain 26715 chr19 58617616 + 28355047 28355430 MER1A 529 + 67 524 46664 16 17 61 215 0 27 70 11 15 47 1 0 6 chain 5435 chr19 58617616 + 28389492 28389689 L1MA7 2200 + 1880 2031 83528 36 121 75 40 chain 44286 chr19 58617616 + 28438409 28438992 L1PA8 5853 + 5286 5853 31960 64 2 0 18 16 0 152 1 3 41 1 0 23 1 7 15 2 0 70 1 0 63 1 0 16 4 3 92 chain 60144 chr19 58617616 + 28495879 28496549 L1PA5 6144 + 4970 5643 26332 56 0 1 267 0 2 347 chain 45033 chr19 58617616 + 28522095 28522646 MER41A 554 + 2 554 31560 223 0 1 328 chain 44255 chr19 58617616 + 28528650 28529205 MER41A 554 + 0 551 31977 415 10 6 130 chain 88123 chr19 58617616 + 28625823 28626956 L1PA6 6164 + 5035 6162 20025 58 12 0 122 0 1 99 5 10 837 chain 4217 chr19 58617616 + 28645807 28645860 L1MB7 1623 + 1370 1423 90024 53 chain 250822 chr19 58617616 + 28676991 28679744 L1PA3long 6157 + 3391 6147 8208 1914 0 3 839 chain 130647 chr19 58617616 + 28684091 28685602 L1PA5 6144 + 4635 6138 13959 89 0 7 33 22 0 533 0 4 688 0 1 11 0 1 100 0 1 35 chain 35727 chr19 58617616 + 28694893 28695367 LTR3A 482 + 0 482 37584 156 7 16 224 12 11 75 chain 33404 chr19 58617616 + 28738916 28739279 L1PA3long 6157 + 5540 5903 39172 363 chain 22836 chr19 58617616 + 28739282 28739532 L1PA3long 6157 + 5907 6157 52611 250 chain 5451 chr19 58617616 + 28741005 28741107 L1MC1 2226 + 1984 2076 83456 10 2 0 53 24 16 13 chain 15866 chr19 58617616 + 28753023 28753223 L1PA6 6164 + 5950 6151 61204 25 1 2 174 chain 456478 chr19 58617616 + 28756881 28762969 L1PA2 6032 + 10 6031 4221 132 92 116 183 24 24 95 31 32 115 0 7 51 141 13 115 2 1 131 119 110 1062 1 0 68 2 1 783 2 0 105 12 10 364 0 1 29 5 4 94 0 1 137 9 10 736 0 44 164 2 1 150 1 0 280 1 0 390 0 2 460 chain 40571 chr19 58617616 + 28769066 28769519 L1PA3long 6157 + 4429 4886 34245 75 0 4 378 chain 230243 chr19 58617616 + 28806186 28808784 L1PA5 6144 + 3538 6135 8739 1282 11 11 974 1 0 330 chain 4960 chr19 58617616 + 28931011 28931072 U13_ 108 + 10 72 85839 27 0 1 34 chain 20319 chr19 58617616 + 28939548 28940041 L1PB1 5432 + 5028 5402 55987 67 109 19 24 1 0 8 1 0 10 18 12 51 1 0 14 4 3 46 1 0 14 23 12 18 3 1 5 1 0 14 2 0 24 1 0 21 1 0 11 chain 48853 chr19 58617616 + 28958921 28959546 MER41B 635 + 0 627 29992 128 0 1 297 0 1 29 11 10 45 0 1 115 chain 47552 chr19 58617616 + 28993289 28993873 LTR10C 591 + 0 585 30461 34 2 0 59 0 1 416 0 2 73 chain 19714 chr19 58617616 + 29116827 29117183 THE1C 375 + 0 375 56770 87 47 52 37 0 2 8 22 20 19 4 18 30 0 1 5 1 0 96 chain 507079 chr19 58617616 + 29132610 29138738 L1PA6 6164 + 0 6162 2885 196 0 1 312 2 1 71 0 1 233 3 0 124 0 25 115 1 2 371 3 1 246 0 2 236 6 1 144 5 14 237 0 1 416 1 6 187 0 1 171 0 1 69 3 0 4 0 1 27 0 1 1283 2 1 635 0 1 336 2 1 332 0 1 43 1 0 311 chain 104758 chr19 58617616 + 29159298 29160743 L1PB2 3958 + 1961 3437 17722 167 5 18 133 13 26 78 0 14 85 18 0 234 0 2 20 0 12 170 63 62 325 2 0 53 0 3 14 5 0 15 1 0 34 0 1 10 chain 4473 chr19 58617616 + 29180376 29180429 L1MEf 1413 + 950 1003 88477 53 chain 3090 chr19 58617616 + 29184730 29184766 MLT2A1 477 + 119 155 98865 36 chain 20144 chr19 58617616 + 29211085 29211312 L1PA3long 6157 + 5202 5429 56199 12 0 1 4 1 0 210 chain 544308 chr19 58617616 + 29225781 29231803 L1PA3long 6157 + 0 6156 1066 153 0 1 419 0 4 201 1 129 126 0 1 668 0 1 4449 1 0 4 chain 475396 chr19 58617616 + 29348349 29353842 L1PA4 6152 + 0 5521 3741 1034 1 0 410 5 6 266 1 0 657 0 1 10 0 23 764 2 1 5 1 0 73 0 4 1033 0 2 1011 0 1 220 chain 20877 chr19 58617616 + 29354968 29355337 THE1D 372 + 0 372 55283 98 1 2 62 0 1 13 65 69 24 1 0 7 1 0 65 2 1 30 chain 27229 chr19 58617616 + 29402995 29403278 AluYb8 318 + 19 302 45929 283 chain 23801 chr19 58617616 + 29423763 29424120 THE1B 368 + 0 367 51104 47 7 8 117 1 0 26 36 46 123 chain 3420 chr19 58617616 + 29440836 29440872 LTR12C 1709 + 796 832 95903 36 chain 36567 chr19 58617616 + 29452451 29453070 L1PB1 5432 + 4808 5384 37033 4 0 1 49 21 0 61 0 1 81 1 0 72 0 9 17 13 11 22 1 0 11 1 0 10 16 10 53 2 1 16 1 0 31 1 0 12 1 0 16 3 0 6 19 10 15 2 0 5 1 0 14 2 0 24 1 0 14 chain 545832 chr19 58617616 + 29459290 29465188 L1PA2 6032 + 1 5897 979 2714 0 1 4 1 0 748 2 0 5 4 2 2126 0 2 294 chain 288880 chr19 58617616 + 29553153 29557111 L1PA10 4194 + 183 4161 7165 7 4 0 9 0 4 13 11 7 9 2 0 6 14 12 21 2 0 15 46 20 7 1 0 24 2 0 15 2 1 16 7 1 10 1 0 15 8 0 8 10 7 60 0 4 13 5 3 144 2 36 620 0 4 66 0 1 281 0 1 45 0 1 137 0 1 4 0 3 22 2 1 155 0 4 210 1 5 161 0 2 180 4 0 57 0 1 72 0 2 5 2 0 16 1 3 94 0 1 4 1 0 304 7 0 134 7 32 6 0 6 167 0 1 160 4 10 85 1 3 33 22 16 329 4 1 34 1 0 11 chain 59250 chr19 58617616 + 29558897 29559613 L1PA7 6471 + 5745 6463 26586 392 0 1 138 0 1 28 14 14 128 1 0 4 0 1 11 chain 48371 chr19 58617616 + 29625465 29626409 PABL_A 660 + 0 650 30163 101 0 1 89 0 3 16 1 0 219 300 0 73 7 11 18 4 5 6 1 0 9 6 5 94 chain 18077 chr19 58617616 + 29643744 29644997 MER41B 635 + 11 635 58582 31 7 5 46 1 0 33 5 6 42 968 336 23 0 5 97 chain 30671 chr19 58617616 + 29793777 29794284 L1PB1 5432 + 4906 5396 41406 196 1 0 15 3 0 21 1 0 7 2 1 10 2 0 3 2 0 8 2 0 64 6 5 45 1 0 15 3 0 6 15 6 19 21 32 11 1 0 21 1 0 5 chain 22228 chr19 58617616 + 29906950 29907202 L1PA7 6471 + 6216 6466 53508 243 2 0 7 chain 36690 chr19 58617616 + 29917338 29917800 LTR10F 562 + 0 562 36959 144 0 87 69 1 12 43 0 1 148 0 1 57 chain 21071 chr19 58617616 + 30011817 30012051 L1PA5 6144 + 5903 6137 55038 234 chain 21504 chr19 58617616 + 30040903 30041538 THE1A 353 + 0 333 54506 15 2 0 32 0 1 46 1 0 13 32 37 90 304 0 62 1 0 37 chain 120759 chr19 58617616 + 30041558 30043102 THE1A-int 1579 + 0 1574 15390 85 0 10 143 0 3 39 3 2 50 0 1 318 0 1 285 14 31 244 1 0 225 1 0 36 0 1 100 chain 23365 chr19 58617616 + 30043107 30043456 THE1A 353 + 0 353 51829 15 2 0 33 9 10 23 7 12 47 3 1 151 4 6 55 chain 22533 chr19 58617616 + 30114499 30114863 L1PB1 5432 + 4584 4944 53065 43 11 9 63 1 0 96 64 63 86 chain 26576 chr19 58617616 + 30129567 30129850 AluYa5 310 + 28 310 46871 104 1 0 178 chain 119957 chr19 58617616 + 30142653 30143934 L1HS 6032 + 3243 4524 15544 1281 chain 33049 chr19 58617616 + 30176413 30176988 MER4B 649 + 0 633 39477 28 1 0 55 0 1 73 8 51 11 1 0 77 11 14 31 0 15 46 87 86 76 2 1 68 chain 70495 chr19 58617616 + 30192976 30193783 L1PA4 6152 + 3146 3955 23870 741 0 2 66 chain 4468 chr19 58617616 + 30204521 30204608 UCON28b 102 + 1 68 88505 22 23 3 42 chain 24398 chr19 58617616 + 30480418 30480714 L1PA8 5853 + 5563 5853 50173 46 2 0 73 1 0 7 1 0 51 2 1 22 1 0 90 chain 22479 chr19 58617616 + 30624718 30625101 THE1D 372 + 0 372 53149 15 7 6 30 16 7 117 1 0 18 1 0 29 3 0 11 1 7 29 1 0 53 19 18 32 chain 3973 chr19 58617616 + 30710016 30710064 MER58B 340 + 136 184 91622 48 chain 60240 chr19 58617616 + 30770155 30770809 L1PA3long 6157 + 5503 6157 26312 654 chain 20210 chr19 58617616 + 30791736 30792092 THE1B 368 + 0 362 56128 108 14 15 53 63 68 26 0 1 35 7 6 50 chain 44510 chr19 58617616 + 30806183 30806810 MER41B 635 + 0 635 31821 64 0 2 59 1 2 42 4 5 172 5 6 40 0 1 68 12 11 34 1 3 47 9 10 69 chain 21250 chr19 58617616 + 30836793 30837052 AluSp 311 + 10 287 54822 42 4 22 213 chain 32582 chr19 58617616 + 31005657 31006015 L1PA4 6152 + 5785 6143 39887 358 chain 61343 chr19 58617616 + 31031285 31031988 L1PA6 6164 + 5458 6162 26024 40 0 1 663 chain 3805 chr19 58617616 + 31036093 31036161 L1ME1 1623 + 1093 1169 92805 33 7 15 28 chain 11824 chr19 58617616 + 31059169 31059398 L1MA4A 3247 + 2894 3096 67160 18 24 10 17 25 15 14 3 0 128 chain 6433 chr19 58617616 + 31129356 31129436 MLT1A0 366 + 63 143 79560 80 chain 5996 chr19 58617616 + 31213415 31213544 L1MC1 2226 + 2057 2168 81092 26 4 0 24 2 0 15 25 14 16 1 0 16 chain 8585 chr19 58617616 + 31236624 31236738 L1MA9 1812 + 976 1089 73476 12 1 0 101 chain 21798 chr19 58617616 + 31267931 31268275 THE1B 368 + 0 348 54102 169 1 0 18 10 13 9 1 5 12 34 32 90 chain 29234 chr19 58617616 + 31394270 31394620 THE1A 353 + 0 349 42992 111 1 0 238 chain 20732 chr19 58617616 + 31436882 31437239 THE1C 375 + 0 348 55451 107 56 50 21 0 3 14 19 13 140 chain 29410 chr19 58617616 + 31566303 31566700 L1PA8 5853 + 5439 5853 42719 125 1 0 44 2 0 54 0 31 8 12 0 42 1 0 17 2 1 21 1 4 67 chain 107069 chr19 58617616 + 31653397 31654536 L1HS 6032 + 4891 6030 17426 1139 chain 6733 chr19 58617616 + 31722441 31722561 L1PB2 3958 + 3721 3838 78530 21 17 15 17 2 1 63 chain 6397 chr19 58617616 + 31726553 31726631 HERVL-int 5654 + 0 78 79686 78 chain 3187 chr19 58617616 + 31729965 31730015 MLT2B2 565 + 507 551 98020 12 6 0 32 chain 2629 chr19 58617616 + 31746384 31746412 L1MA9 1812 + 1677 1705 102838 28 chain 42603 chr19 58617616 + 31803841 31804441 LTR71B 605 + 0 605 32999 134 4 10 24 14 16 161 6 1 149 18 16 84 0 4 6 chain 64114 chr19 58617616 + 31835049 31836134 L1MA2 4263 + 2998 4114 25391 107 46 43 15 4 5 118 1 32 51 22 7 188 6 5 15 5 2 15 1 27 17 33 32 109 2 1 15 4 8 100 0 4 39 9 12 93 7 0 11 4 0 7 2 0 29 1 0 9 chain 26413 chr19 58617616 + 31919932 31920291 THE1C 375 + 0 375 47101 275 16 33 41 1 0 26 chain 23069 chr19 58617616 + 31940185 31940441 AluY 311 + 39 296 52260 93 0 1 163 chain 3911 chr19 58617616 + 31995810 31995851 tRNA-Gln-CAG 43 + 2 43 92048 41 chain 43318 chr19 58617616 + 32050041 32050596 MER41A 554 + 0 554 32551 165 9 8 381 chain 28562 chr19 58617616 + 32061635 32062016 THE1C 375 + 0 375 44012 140 1 5 120 10 1 84 1 0 25 chain 24361 chr19 58617616 + 32063233 32063566 L1PA8 5853 + 5527 5853 50232 35 1 0 41 10 8 70 1 0 7 1 0 52 2 1 21 1 0 91 chain 22163 chr19 58617616 + 32136368 32136704 L1PA8 5853 + 5523 5853 53621 12 0 1 28 1 0 31 0 1 6 9 6 70 12 10 52 2 1 19 1 0 93 chain 36572 chr19 58617616 + 32185616 32186078 L1PA8 5853 + 5394 5853 37028 170 1 0 44 2 0 72 1 0 8 1 0 52 2 1 19 2 1 48 0 4 40 chain 5053 chr19 58617616 + 32189930 32190014 MER96B 391 + 227 310 85401 36 4 5 18 2 0 24 chain 48611 chr19 58617616 + 32193164 32193778 L1PA7 6471 + 5041 5655 30082 64 0 1 515 1 0 34 chain 44304 chr19 58617616 + 32245983 32246563 Tigger1 2417 + 345 931 31945 202 10 14 24 1 2 159 0 1 184 chain 46719 chr19 58617616 + 32264112 32264660 MER41A 554 + 0 554 30763 419 0 1 48 0 5 81 chain 36799 chr19 58617616 + 32284077 32284741 L1PB1 5432 + 4824 5420 36884 279 35 6 4 0 1 24 2 1 17 2 0 3 2 0 8 2 0 53 2 1 16 5 0 21 7 2 21 1 0 15 3 0 6 19 9 16 8 5 14 5 3 10 0 8 8 10 1 15 1 0 13 1 0 16 chain 4879 chr19 58617616 + 32287015 32287085 L1MB3 1562 + 1433 1502 86265 5 1 0 30 1 0 13 0 1 20 chain 3405 chr19 58617616 + 32423562 32423606 MADE1 96 + 31 90 96020 14 0 15 30 chain 20467 chr19 58617616 + 32513325 32513581 AluY 311 + 40 298 55815 92 1 2 147 0 1 16 chain 139058 chr19 58617616 + 32571407 32573114 LTR12C 1709 + 2 1709 13181 379 19 22 83 1 2 349 1 0 89 36 32 153 1 0 5 3 1 94 13 17 481 chain 2979 chr19 58617616 + 32572328 32572364 LTR12C 1709 + 1004 1040 69239 36 chain 4712 chr19 58617616 + 32620923 32621017 L1MA10 1535 + 1416 1495 87191 29 10 7 20 12 0 23 chain 82983 chr19 58617616 + 32764945 32765889 L1PA4 6152 + 5197 6141 21020 620 1 2 164 2 1 157 chain 2920 chr19 58617616 + 32842831 32842862 MADE1 96 - 65 96 100675 31 chain 541164 chr19 58617616 + 32846037 32852114 L1PA4 6152 + 6 6083 1263 570 1 0 154 1 0 106 17 0 180 0 1 87 1 0 1282 0 4 73 1 0 783 0 4 1101 0 4 283 0 5 661 0 4 728 5 4 43 chain 30860 chr19 58617616 + 32855232 32855943 MER83 447 + 0 403 41260 62 1 0 3 1 0 115 306 0 223 chain 6195 chr19 58617616 + 32913531 32913603 MER81 114 + 22 94 80372 72 chain 110163 chr19 58617616 + 33036456 33037857 LTR12C 1709 + 0 1709 17063 291 0 1 46 0 43 79 9 7 74 4 0 109 0 278 144 0 2 38 1 0 4 6 4 104 0 4 242 14 0 151 12 11 6 0 4 67 chain 4311 chr19 58617616 + 33177056 33177101 tRNA-Thr-ACY 58 + 0 45 89441 45 chain 8018 chr19 58617616 + 33236419 33236511 MER30B 195 + 83 177 74844 11 0 2 81 chain 2288 chr19 58617616 + 33318930 33318976 L1MEf 1413 + 1176 1224 104792 18 10 12 18 chain 22797 chr19 58617616 + 33480521 33480799 AluSc 308 + 7 285 52664 278 chain 26293 chr19 58617616 + 33502386 33502915 MER51A 677 + 0 661 47282 27 10 16 63 0 1 34 0 1 34 38 21 40 23 0 4 0 163 74 59 61 48 9 1 19 0 7 47 chain 8850 chr19 58617616 + 33532437 33532548 MER41B 635 + 504 615 72862 111 chain 43877 chr19 58617616 + 33569385 33569928 MER41A 554 + 0 554 32207 180 0 10 279 1 6 38 4 0 41 chain 8225 chr19 58617616 + 33586644 33586745 MER4A1 472 + 0 101 74340 101 chain 12663 chr19 58617616 + 33589729 33589879 Tigger1 2417 + 1246 1397 65695 127 0 1 23 chain 45324 chr19 58617616 + 33605865 33606419 MER41A 554 + 0 554 31408 290 0 1 117 1 0 19 0 1 114 1 0 12 chain 8307 chr19 58617616 + 33607779 33607942 L1MC1 2226 + 1890 2047 74145 27 1 0 27 37 34 15 2 0 54 chain 6644 chr19 58617616 + 33696435 33696517 MER1B 344 + 152 234 78830 82 chain 8674 chr19 58617616 + 33696558 33696728 MER1A 529 + 374 529 73277 53 56 41 61 chain 23367 chr19 58617616 + 33714591 33714939 THE1B 368 + 0 356 51825 168 1 0 16 51 60 112 chain 40237 chr19 58617616 + 33733965 33734484 MER41A 554 + 0 544 34487 207 9 11 167 6 27 17 1 2 10 0 1 102 chain 27603 chr19 58617616 + 33787143 33787557 MSTA 426 + 0 426 45449 28 0 1 72 0 1 28 5 6 65 2 0 5 3 0 6 0 4 80 1 21 23 6 1 12 9 4 69 chain 17106 chr19 58617616 + 33856165 33856525 L1PB1 5432 + 5088 5419 59685 15 1 2 10 3 0 23 1 0 6 1 0 12 2 0 3 2 0 9 2 0 52 18 16 44 1 0 16 47 36 14 2 0 24 1 0 22 1 0 12 1 0 15 chain 41666 chr19 58617616 + 33937504 33938214 L1PB1 5432 + 4744 5427 33582 60 2 0 183 9 10 106 13 11 20 1 0 12 1 0 12 5 1 9 10 8 46 0 2 5 1 7 39 36 22 30 7 4 15 2 0 24 1 0 21 1 0 13 1 0 14 1 0 5 1 0 4 chain 43729 chr19 58617616 + 33977050 33977594 MER41A 554 + 0 554 32298 87 5 6 102 0 8 182 0 1 168 chain 21599 chr19 58617616 + 34100386 34101118 Tigger3 1187 + 2 528 54358 21 374 164 15 1 0 73 15 12 58 1 2 24 1 2 22 9 17 8 2 0 108 chain 154986 chr19 58617616 + 34131893 34133698 SVA_D 2077 + 20 2061 12059 16 0 19 22 0 17 282 0 4 306 0 40 177 2 0 9 2 0 31 45 5 71 0 51 32 11 90 27 0 1 138 0 49 514 0 20 120 chain 3872 chr19 58617616 + 34132740 34132785 SVA_D 2077 + 1257 1302 40466 45 chain 28107 chr19 58617616 + 34344308 34344608 AluYa5 310 + 0 299 44705 132 1 0 167 chain 30446 chr19 58617616 + 34479507 34479974 MER1A 529 + 0 529 41630 30 11 14 36 14 55 14 9 32 262 33 28 58 chain 29872 chr19 58617616 + 34514095 34514494 LTR7 482 + 0 482 42162 101 13 63 60 5 37 44 0 1 176 chain 228238 chr19 58617616 + 34514496 34517613 HERVH-int 3825 + 0 3213 8794 76 2 0 187 0 5 47 26 25 70 11 10 37 13 18 10 2 0 30 0 2 5 0 3 5 134 227 21 1 0 357 12 5 86 15 0 205 9 0 348 0 1 171 0 4 121 0 10 322 0 1 5 5 4 178 0 1 203 11 0 365 0 21 27 chain 24843 chr19 58617616 + 34517725 34518009 MER9a1 513 + 229 513 49527 284 chain 89260 chr19 58617616 + 34569708 34570811 MER11A 1151 + 0 1151 19811 108 0 2 120 1 0 64 0 11 83 0 1 54 0 1 115 1 0 84 0 1 29 0 2 177 0 1 9 3 0 6 0 35 182 1 0 66 chain 460442 chr19 58617616 + 34625134 34630474 L1PA4 6152 + 1 5351 4116 947 0 11 1356 8 0 235 5 1 492 0 1 120 2 1 85 0 4 113 0 1 321 3 1 632 0 2 314 0 5 111 0 1 596 chain 10785 chr19 58617616 + 34631274 34631434 MER30 238 + 68 238 68888 43 4 15 21 2 1 90 chain 3348 chr19 58617616 + 34641780 34641826 MER4D1 891 + 289 339 96619 7 0 5 14 1 0 24 chain 7115 chr19 58617616 + 34641876 34641967 LTR29 598 + 466 557 77208 91 chain 339805 chr19 58617616 + 34657253 34661279 L1PA6 6164 + 2149 6161 6075 41 0 2 141 0 1 248 9 14 591 6 4 109 1 0 391 39 5 6 3 0 90 1 0 411 0 1 61 0 1 480 0 5 705 0 10 27 0 1 514 0 1 152 chain 98412 chr19 58617616 + 34668011 34669231 LTR12C 1709 + 0 1709 18491 297 0 1 40 0 43 81 7 6 19 0 6 306 3 319 106 11 4 248 0 131 102 chain 284455 chr19 58617616 + 34696378 34707132 L1P3 4156 + 1 4139 7303 241 5 19 18 1 0 4 17 18 19 2 1 80 0 4 240 66 85 18 0 1 56 12 7 95 47 31 272 8 12 13 18 19 15 6 4 121 14 17 115 0 51 586 8 13 172 0 2 27 0 1 136 1 4 15 7 8 85 5 4 256 0 4 177 3 0 206 355 1 252 6341 1 298 5 0 172 4 5 105 2 0 7 2 1 24 chain 9311 chr19 58617616 + 34708757 34708980 L1PB1 5432 + 5221 5422 71887 15 1 0 45 1 0 4 78 61 24 1 0 21 1 0 13 1 0 18 chain 3390 chr19 58617616 + 34778622 34778858 MER63C 923 + 424 662 96184 39 134 137 14 24 28 6 5 0 14 chain 178861 chr19 58617616 + 34857993 34860177 L1P2 5180 + 595 2846 10639 172 1 0 20 1 0 5 1 0 39 0 27 36 1 2 37 0 25 595 0 1 497 0 1 112 4 19 136 1 0 140 2 0 140 0 1 79 2 4 163 chain 502853 chr19 58617616 + 34860177 34865891 L1PA4 6152 + 3 5828 3035 30 13 0 118 5 6 423 1 0 118 7 0 73 1 129 944 0 4 3453 1 0 527 chain 34720 chr19 58617616 + 34870545 34871001 LTR15 485 + 0 461 38212 107 0 1 17 4 0 25 0 2 29 0 4 98 0 4 149 1 0 6 2 0 14 0 1 4 chain 74650 chr19 58617616 + 34920177 34921118 LTR5_Hs 974 + 0 947 22924 459 0 4 163 10 9 21 0 1 17 3 5 268 chain 9263 chr19 58617616 + 34921118 34921233 MER11C 1089 + 973 1089 71993 19 0 1 96 chain 6535 chr19 58617616 + 34928840 34928920 MER44A 345 + 191 271 79215 80 chain 26108 chr19 58617616 + 34948025 34948325 AluSp 311 + 11 311 47556 300 chain 70307 chr19 58617616 + 34965024 34966107 MER11B 1079 + 0 1079 23920 358 0 5 92 20 19 22 41 30 68 0 1 104 0 7 14 1 0 18 48 40 15 6 8 16 10 11 51 0 1 37 0 1 128 5 4 29 chain 14956 chr19 58617616 + 34966122 34966306 LTR8 732 + 0 189 62316 47 0 2 120 0 3 17 chain 30064 chr19 58617616 + 35072591 35072960 PABL_A 660 + 0 581 41992 102 0 1 144 0 211 123 chain 24309 chr19 58617616 + 35076331 35076631 AluSp 311 + 0 302 50317 83 0 4 198 2 0 17 chain 24497 chr19 58617616 + 35089887 35090179 AluSp 311 + 0 288 50026 11 0 1 9 6 0 119 0 1 147 chain 7940 chr19 58617616 + 35185226 35185332 L1MA5 2750 + 2495 2600 75021 69 1 0 36 chain 25461 chr19 58617616 + 35201944 35202289 THE1C 375 + 0 345 48538 70 2 1 133 13 14 127 chain 41149 chr19 58617616 + 35214945 35215467 MER41A 554 + 0 552 33878 42 0 1 14 0 15 21 0 1 111 0 12 213 0 1 121 chain 28563 chr19 58617616 + 35315970 35316452 MER1A 529 + 0 529 44011 12 30 29 35 23 63 100 14 21 184 23 24 61 chain 2844 chr19 58617616 + 35343823 35343855 DNA1_Mam 279 - 126 158 101283 32 chain 43799 chr19 58617616 + 35382455 35382942 LTR2C 499 + 6 494 32254 434 0 1 53 chain 14796 chr19 58617616 + 35400115 35400351 MER49 923 + 646 884 62536 37 8 9 69 2 1 55 3 4 13 6 7 43 chain 55822 chr19 58617616 + 35470814 35471859 MER4E1 777 + 0 770 27621 23 0 2 168 1 13 40 0 1 191 0 5 97 2 6 52 311 0 34 0 1 67 2 1 18 0 11 15 1 0 10 0 2 13 chain 17052 chr19 58617616 + 35566614 35566839 MER30 238 + 0 238 59753 103 8 21 114 chain 4042 chr19 58617616 + 35572034 35572084 THE1B 368 + 0 51 91144 11 0 1 39 chain 24223 chr19 58617616 + 35594628 35594912 AluSc5 308 + 1 291 50455 75 0 6 209 chain 44278 chr19 58617616 + 35607116 35607618 MER9a1 513 + 0 506 31966 310 0 4 192 chain 11761 chr19 58617616 + 35628152 35628305 LTR7B 505 + 353 505 67287 88 14 13 51 chain 8251 chr19 58617616 + 35684336 35684482 MER30 238 + 67 236 74284 39 8 28 12 7 13 40 4 1 36 chain 16290 chr19 58617616 + 35859231 35859441 MER30 238 + 0 238 60635 107 4 25 33 0 7 66 chain 33789 chr19 58617616 + 35881205 35881656 MER4A1 472 + 0 472 38859 124 3 5 5 1 0 96 3 24 39 1 0 179 chain 6613 chr19 58617616 + 36049145 36049219 HY5 76 + 0 74 78929 74 chain 22203 chr19 58617616 + 36127076 36127346 AluSc 308 + 9 295 53550 47 0 17 189 1 0 33 chain 4801 chr19 58617616 + 36240213 36240272 MER2 342 + 147 206 86692 59 chain 2865 chr19 58617616 + 36420225 36420260 MER58B 340 + 296 331 101106 35 chain 26389 chr19 58617616 + 36429281 36430333 MER4A1 472 + 0 471 47136 11 3 5 129 1 2 40 350 84 47 1 0 4 0 1 93 318 0 55 chain 145898 chr19 58617616 + 36490462 36492150 SVA_D 2077 + 30 2069 12624 189 14 7 164 0 3 149 0 80 140 37 0 149 0 87 38 0 2 177 0 223 631 chain 3323 chr19 58617616 + 36581425 36581509 L1MB3 1562 + 1143 1226 96827 24 36 35 24 chain 19136 chr19 58617616 + 36667260 36667480 AluSp 311 + 0 260 57412 23 1 26 16 0 15 180 chain 9566 chr19 58617616 + 36735874 36735995 L1MA2 4263 + 2185 2306 71337 121 chain 75673 chr19 58617616 + 36736029 36736895 MER11D 897 + 1 897 22669 280 0 1 216 6 8 41 0 4 42 1 24 280 chain 3873 chr19 58617616 + 36746374 36746419 Tigger1 2417 + 288 333 92335 45 chain 6740 chr19 58617616 + 36810906 36811006 MER20 218 + 40 144 78512 26 1 0 16 4 9 53 chain 45313 chr19 58617616 + 36836106 36837015 LTR71B 605 + 0 605 31414 134 14 13 127 0 1 79 316 0 127 0 2 11 0 4 9 1 2 69 0 5 22 chain 28396 chr19 58617616 + 36886705 36887013 AluYk12 309 + 0 301 44275 118 7 0 183 chain 74854 chr19 58617616 + 37006158 37007120 LTR5_Hs 974 + 0 974 22882 155 0 2 10 1 0 300 0 1 100 0 1 7 1 0 80 1 0 163 8 15 19 20 18 20 0 6 77 chain 35253 chr19 58617616 + 37063209 37063708 LTR15 485 + 0 485 37863 108 1 0 41 0 2 127 13 17 46 16 0 76 14 16 6 5 0 46 chain 7110 chr19 58617616 + 37070893 37071058 MER58A 224 + 8 190 77225 21 45 64 21 11 9 67 chain 3616 chr19 58617616 + 37094031 37094076 MER5B 177 + 44 89 94305 45 chain 537320 chr19 58617616 + 37116469 37122613 L1PA4 6152 + 2 6141 1494 578 1 0 247 23 6 354 1 0 57 13 12 588 0 4 838 2 1 484 3 1 172 0 2 440 1 0 1496 0 4 12 0 4 135 0 5 699 chain 53117 chr19 58617616 + 37137767 37138441 MER4A 717 + 0 717 28534 82 1 0 46 6 2 145 0 2 95 0 45 229 0 1 70 chain 4231 chr19 58617616 + 37197797 37197847 MADE1 96 + 45 96 89935 20 0 1 30 chain 66035 chr19 58617616 + 37320787 37321668 LTR5_Hs 974 + 0 961 24948 147 20 22 287 15 21 69 1 68 42 0 1 45 0 4 70 7 7 178 chain 75693 chr19 58617616 + 37331390 37332372 LTR5_Hs 974 + 0 974 22659 289 0 1 112 14 0 65 0 1 188 1 0 163 8 15 19 20 18 103 chain 28135 chr19 58617616 + 37434585 37435001 LTR7B 505 + 0 492 44663 38 0 2 68 0 10 57 0 38 12 21 16 8 0 31 85 6 5 42 0 2 27 15 14 37 chain 46370 chr19 58617616 + 37438414 37439071 L1MA3 4352 + 2873 3553 30895 90 0 1 30 0 15 127 20 22 229 1 0 8 18 19 10 0 2 14 1 4 109 chain 7555 chr19 58617616 + 37440282 37440461 L1MB5 1630 + 1359 1515 75977 34 12 11 12 18 0 54 28 24 21 chain 31752 chr19 58617616 + 37445439 37446020 L1PB 1623 + 1030 1575 40535 71 6 7 79 0 2 120 20 18 119 1 0 7 2 1 26 108 73 22 chain 24490 chr19 58617616 + 37472461 37472760 AluSp 311 + 2 300 50044 40 0 1 89 2 0 168 chain 6838 chr19 58617616 + 37546164 37546249 Tigger3c 601 + 1 86 78176 85 chain 8468 chr19 58617616 + 37579478 37579578 L1P4 1494 + 1025 1126 73757 84 0 1 16 chain 3348 chr19 58617616 + 37589634 37589675 L1MEa 740 + 7 48 96614 41 chain 77521 chr19 58617616 + 37622718 37623773 MER11C 1089 + 0 1073 22193 246 0 9 62 0 4 65 1 0 148 69 70 81 6 10 4 1 0 38 0 1 127 0 1 50 1 0 148 0 1 8 chain 8732 chr19 58617616 + 37645978 37646094 MER44D 709 + 38 153 73137 44 1 0 71 chain 17153 chr19 58617616 + 37647272 37647627 THE1B 368 + 8 368 59632 103 24 25 15 52 45 13 1 5 10 11 19 63 7 6 56 chain 22035 chr19 58617616 + 37687956 37688189 SVA_E 1901 + 1668 1901 53790 233 chain 35157 chr19 58617616 + 37701258 37701730 LTR10F 562 + 6 562 37920 51 0 1 32 0 1 25 0 56 57 0 24 13 5 11 223 4 0 62 chain 19667 chr19 58617616 + 37704693 37704955 AluY 311 + 11 287 56835 26 7 14 81 0 1 30 8 14 110 chain 193080 chr19 58617616 + 37741472 37744096 L1PA8A 6298 + 3970 6290 9969 211 0 5 169 1 2 468 5 4 583 1 11 68 1 0 7 1 2 46 316 0 45 8 2 209 0 1 356 0 2 129 chain 5876 chr19 58617616 + 37752181 37752295 L1MB7 1623 + 662 770 81572 31 34 28 49 chain 54228 chr19 58617616 + 37757575 37758201 L1PA5 6144 + 5517 6135 28142 374 1 0 73 7 0 171 chain 114112 chr19 58617616 + 37775575 37777171 L1PB1 5432 + 3451 5000 16540 39 0 1 32 9 11 202 48 1 416 0 1 474 3 0 142 75 74 156 chain 24059 chr19 58617616 + 37777763 37778045 AluYc3 301 + 10 292 50712 103 1 2 98 1 0 79 chain 10512 chr19 58617616 + 37795410 37795936 LTR54B 464 + 25 463 69393 102 326 236 31 41 43 26 chain 74234 chr19 58617616 + 37815177 37816238 MER11A 1151 + 49 1149 23026 30 0 8 112 2 0 25 1 2 63 8 5 21 31 0 87 0 1 279 20 24 37 0 4 70 0 1 16 0 57 103 0 2 10 6 5 73 2 1 24 1 0 40 chain 562829 chr19 58617616 + 37837502 37843533 L1PA2 6032 + 1 6032 130 6031 chain 24573 chr19 58617616 + 37845125 37845443 AluSc 308 + 0 305 49892 67 6 0 64 1 0 154 6 0 20 chain 6207 chr19 58617616 + 37851462 37851550 MER54B 801 + 688 775 80333 54 7 6 27 chain 76030 chr19 58617616 + 37866176 37867144 LTR5_Hs 974 + 0 974 22561 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 3676 chr19 58617616 + 37905296 37905346 MER33 330 + 180 234 93767 19 1 0 16 0 5 14 chain 3842 chr19 58617616 + 38051073 38051119 MIR 256 + 190 236 92548 46 chain 11353 chr19 58617616 + 38092239 38092377 L1PA6 6164 + 6027 6162 68002 70 1 0 58 2 0 7 chain 25253 chr19 58617616 + 38186713 38187028 AluSp 311 + 5 303 48865 159 18 1 138 chain 4816 chr19 58617616 + 38294544 38294612 HY3 101 + 1 70 86617 22 1 2 45 chain 23549 chr19 58617616 + 38314977 38315270 AluSp 311 + 1 307 51505 114 8 21 171 chain 24613 chr19 58617616 + 38582121 38582420 AluSp 311 + 6 303 49849 284 2 0 13 chain 25167 chr19 58617616 + 38634321 38634611 AluSp 311 + 5 294 49011 264 2 1 24 chain 25332 chr19 58617616 + 38641357 38641649 AluSp 311 + 4 296 48740 292 chain 3663 chr19 58617616 + 38700319 38700410 MIRb 242 + 31 120 93890 36 38 36 17 chain 4194 chr19 58617616 + 38750365 38750466 LTR7B 505 + 0 139 90172 33 38 76 30 chain 258372 chr19 58617616 + 38750492 38753648 HERVH-int 3825 + 436 3825 8014 97 1 0 37 2 1 9 1 0 7 27 17 14 1 38 53 23 2 53 0 2 12 0 1 59 0 3 845 0 5 610 0 1 44 1 5 719 9 11 39 37 247 69 6 0 6 5 11 147 0 2 223 chain 26344 chr19 58617616 + 38806093 38806396 AluY 311 + 8 311 47209 303 chain 51927 chr19 58617616 + 38807512 38808112 SVA_A 1864 + 1236 1841 28898 9 2 0 304 8 15 277 chain 12102 chr19 58617616 + 38821980 38822175 LTR12C 1709 + 737 931 37681 101 1 0 93 chain 36621 chr19 58617616 + 38822175 38822670 LTR12C 1709 + 653 1108 37003 40 40 0 126 0 1 17 1 0 271 chain 2482 chr19 58617616 + 38822215 38822255 LTR12C 1709 + 971 1012 37681 7 0 1 33 chain 2005 chr19 58617616 + 38822670 38822698 LTR12C 1709 + 948 976 47295 28 chain 3179 chr19 58617616 + 38866791 38866827 MLT1B 390 + 319 355 98113 36 chain 22369 chr19 58617616 + 38950610 38951626 MER87B 500 + 5 443 53314 73 0 1 81 0 3 12 0 4 19 681 88 33 18 25 99 chain 3768 chr19 58617616 + 39019097 39019143 Tigger2 2703 + 870 916 93094 46 chain 3626 chr19 58617616 + 39041145 39041185 LOR1-int 1871 + 1009 1049 94213 40 chain 20487 chr19 58617616 + 39047163 39047477 LTR46 455 + 146 455 55793 42 0 1 4 12 9 99 4 3 87 20 18 46 chain 3388 chr19 58617616 + 39207248 39207286 MIRb 242 + 195 233 96199 38 chain 4421 chr19 58617616 + 39228538 39228591 L1MD 993 + 710 763 88779 53 chain 88263 chr19 58617616 + 39280203 39281792 HSMAR1 1287 + 13 1287 19992 128 0 2 202 6 5 26 36 37 59 7 0 48 312 0 66 0 3 307 9 12 57 0 1 94 3 2 35 0 1 5 1 0 24 2 3 63 17 14 31 4 2 47 chain 75594 chr19 58617616 + 39479461 39480441 LTR5_Hs 974 + 0 974 22694 17 0 4 112 27 0 152 0 1 233 9 15 158 4 11 116 8 15 37 3 0 41 1 0 62 chain 4672 chr19 58617616 + 39491480 39491531 MER3 215 + 89 140 87431 51 chain 27608 chr19 58617616 + 39493403 39493821 LTR7 482 + 0 482 45445 138 21 28 10 25 35 10 1 2 31 1 0 10 1 46 76 0 2 94 chain 28531 chr19 58617616 + 39608742 39609041 AluYa8 305 + 0 299 44070 299 chain 47868 chr19 58617616 + 39642909 39643484 L1PA7 6471 + 5882 6459 30339 254 0 1 311 0 1 10 chain 504022 chr19 58617616 + 39649216 39655243 L1PA6 6164 + 0 6159 2998 64 1 2 68 25 44 238 0 1 50 1 0 287 0 1 95 3 9 1463 5 4 373 0 2 335 13 11 177 1 0 44 0 5 182 0 3 829 3 5 352 1 90 419 0 1 486 0 1 118 0 2 282 0 4 112 chain 269484 chr19 58617616 + 39667440 39670417 L1PA3long 6157 + 3197 6153 7723 1586 22 0 364 0 1 1005 chain 8514 chr19 58617616 + 39671573 39671669 L1PA5 6144 + 5857 5953 73653 96 chain 40438 chr19 58617616 + 39720135 39720655 L1PA7 6471 + 5943 6466 34355 294 6 10 30 0 2 178 3 0 9 chain 268135 chr19 58617616 + 39722483 39725817 L1PA7 6471 + 3097 6438 7756 410 1 5 16 0 1 4 17 22 281 2 0 84 0 1 98 0 1 237 17 4 110 0 1 293 1 7 313 1 0 628 2 1 6 0 4 229 0 1 276 2 1 76 0 1 230 chain 39634 chr19 58617616 + 39732794 39733225 L1PA2 6032 + 4887 5318 34938 431 chain 36321 chr19 58617616 + 39747624 39748081 L1PA7 6471 + 6014 6467 37197 447 4 0 6 chain 17004 chr19 58617616 + 39748156 39748495 L1M1 2793 + 782 1119 59798 20 1 0 29 2 0 8 1 0 4 74 71 89 1 0 52 4 6 48 0 4 6 chain 19170 chr19 58617616 + 39760736 39761028 L1MA2 4263 + 3811 4104 57375 60 4 14 70 12 10 92 7 0 47 chain 36160 chr19 58617616 + 39789133 39789858 L1PB1 5432 + 4768 5422 37304 39 24 1 16 7 11 65 0 2 93 1 2 4 1 0 94 11 10 9 20 0 24 2 0 6 1 0 12 2 0 3 2 0 8 2 0 53 6 5 11 1 0 44 1 0 14 2 0 8 16 6 18 12 9 11 2 0 24 1 0 4 18 17 13 1 0 14 1 0 4 chain 25826 chr19 58617616 + 39795458 39795757 AluYc 301 + 2 301 47980 119 0 2 120 3 1 57 chain 3236 chr19 58617616 + 39802015 39802053 MER3 215 - 5 43 97602 38 chain 27142 chr19 58617616 + 39807223 39807610 L1MA3 4352 + 3294 3684 46061 93 18 16 111 8 13 157 chain 17815 chr19 58617616 + 39930661 39930950 L1MA3 4352 + 2222 3396 58869 39 0 1 15 9 2 35 1 0 10 3 2 101 7 901 59 1 0 9 chain 37484 chr19 58617616 + 39942039 39942507 LTR15 485 + 0 478 36412 22 0 1 16 0 1 67 0 1 42 0 2 99 0 3 27 0 4 152 1 0 5 2 0 15 0 1 20 chain 29033 chr19 58617616 + 39958056 39958404 LTR7 482 + 0 379 43273 263 1 32 84 chain 49308 chr19 58617616 + 39968476 39969188 LTR17 781 + 0 773 29829 53 0 1 171 3 0 7 0 1 5 13 15 74 1 0 63 20 11 35 0 4 33 3 0 42 7 6 9 1 0 26 0 49 111 0 22 35 chain 5842 chr19 58617616 + 39977156 39977237 MER30 238 + 126 210 81724 63 2 5 16 chain 9871 chr19 58617616 + 40045376 40045519 L1MA4A 3247 + 2989 3130 70684 109 4 3 6 1 0 23 chain 7049 chr19 58617616 + 40071940 40072014 HERV17-int 4347 + 4273 4347 77445 74 chain 28457 chr19 58617616 + 40072328 40072654 LTR17 781 + 0 326 44184 326 chain 7278 chr19 58617616 + 40080392 40080506 L1PA15 4387 + 4218 4327 76740 49 8 5 42 3 1 12 chain 35369 chr19 58617616 + 40091834 40092243 L1PA5 6144 + 5730 6140 37787 80 0 1 329 chain 117284 chr19 58617616 + 40099818 40101093 L1PA4 6152 + 4876 6151 16003 1275 chain 27322 chr19 58617616 + 40105319 40105609 AluYd8 298 + 1 291 45797 290 chain 166078 chr19 58617616 + 40117216 40119386 SVA_F 1814 + 9 1814 11331 207 1 0 683 275 0 49 0 15 214 1 0 4 1 0 93 101 0 530 1 0 10 chain 3727 chr19 58617616 + 40118127 40118174 SVA_F 1814 + 983 1108 58338 17 0 1 10 1 0 13 5 83 1 chain 12036 chr19 58617616 + 40118174 40118333 SVA_F 1814 + 917 1091 44295 30 4 19 125 chain 2955 chr19 58617616 + 40118744 40118823 SVA_F 1814 + 1098 1177 51537 79 chain 11379 chr19 58617616 + 40258797 40259172 L1MB5 1630 + 16 395 67953 6 0 2 70 118 119 14 2 0 26 80 83 59 chain 8774 chr19 58617616 + 40342328 40342439 HY1 111 + 0 111 73049 111 chain 3832 chr19 58617616 + 40553003 40553071 MIR 256 + 68 137 92620 18 14 15 36 chain 21523 chr19 58617616 + 40631702 40632027 THE1D 372 + 0 332 54477 13 0 2 26 12 0 12 1 11 102 24 30 67 0 1 68 chain 21137 chr19 58617616 + 40645264 40645565 AluSg7 307 + 8 306 54965 28 3 0 95 0 1 6 7 4 7 0 3 10 13 12 132 chain 6489 chr19 58617616 + 40649205 40649289 L1M1 2793 + 1168 1251 79384 10 2 1 72 chain 31658 chr19 58617616 + 40659972 40660404 LTR7B 505 + 0 505 40616 105 0 10 51 0 1 8 0 38 12 3 27 26 0 2 85 1 0 76 14 13 51 chain 3148 chr19 58617616 + 40706759 40706793 Charlie1a 1436 + 1312 1346 98385 34 chain 25511 chr19 58617616 + 40752051 40752347 AluSp 311 + 0 292 48467 29 4 0 263 chain 30767 chr19 58617616 + 40833708 40834128 LTR15 485 + 51 475 41334 56 0 1 42 0 2 125 3 7 67 1 2 43 2 1 42 4 0 17 0 1 18 chain 29244 chr19 58617616 + 40864604 40865021 LTR15 485 + 54 475 42974 53 0 1 42 0 2 127 4 8 54 14 15 40 2 1 42 4 0 17 0 1 18 chain 22850 chr19 58617616 + 40887886 40888180 AluSc8 310 + 0 300 52583 9 4 0 122 0 4 13 0 8 129 2 0 15 chain 490968 chr19 58617616 + 40912707 40918913 L1PA5 6144 + 0 6131 3395 121 0 14 18 3 15 376 0 2 242 31 14 16 0 17 334 9 0 215 0 1 571 1 2 295 4 5 47 6 1 89 0 2 797 1 0 5 1 2 26 0 3 28 0 2 248 0 1 433 0 1 236 0 3 36 1 4 260 0 1 835 324 5 464 0 211 133 chain 66580 chr19 58617616 + 40919263 40920277 MER11A 1151 + 56 1132 24800 8 5 0 23 0 91 52 5 9 50 9 5 149 0 1 11 11 0 83 0 1 144 4 6 146 39 38 10 18 0 37 0 1 60 8 9 142 chain 47855 chr19 58617616 + 40954172 40954753 LTR14C 587 + 0 587 30343 253 0 6 328 chain 5171 chr19 58617616 + 40957864 40958231 HERVK14C-int 762 + 572 759 84815 46 4 3 13 139 63 21 121 18 23 chain 38679 chr19 58617616 + 40958723 40959178 LTR14C 587 + 0 457 35581 279 0 2 176 chain 6005 chr19 58617616 + 40974056 40974122 L1PA5 6144 + 5579 5645 81056 66 chain 40060 chr19 58617616 + 40974122 40974617 L1PA5 6144 + 5646 6144 34612 346 5 6 108 0 2 36 chain 36814 chr19 58617616 + 40988546 40988968 MER11C 1089 + 650 1073 36875 105 0 1 317 chain 353814 chr19 58617616 + 41033068 41038449 L1P1 4361 + 2 4341 5870 107 0 1 5 1 0 124 2 1 306 1 0 188 1 0 694 0 1 387 0 1 376 0 4 32 1 2 14 0 2 56 14 12 659 1038 3 180 0 1 7 8 4 76 14 0 11 2 3 85 0 7 202 17 17 104 1 0 7 0 2 467 1 0 155 1 0 23 2 1 12 chain 16187 chr19 58617616 + 41043134 41043354 L1PA8 5853 + 5638 5853 60766 44 1 0 11 2 0 47 2 1 14 6 5 93 chain 507655 chr19 58617616 + 41098538 41106179 L1PA6 6164 + 0 6161 2863 460 6 5 258 19 15 47 3 20 210 0 20 1445 40 7 702 0 1 621 29 1 319 0 9 110 1483 0 659 0 1 382 0 4 173 0 21 472 0 1 4 2 1 185 4 0 8 chain 93220 chr19 58617616 + 41102820 41104246 SVA_F 1814 + 602 1803 19155 127 0 80 7 1 0 4 211 27 8 1 0 32 0 1 10 130 0 32 1 0 18 2 17 36 1 0 4 1 0 121 1 2 49 2 0 10 1 0 616 chain 8695 chr19 58617616 + 41102959 41103074 SVA_F 1814 + 974 1089 52740 115 chain 6289 chr19 58617616 + 41103074 41103170 SVA_F 1814 + 898 1009 40635 38 12 27 46 chain 2042 chr19 58617616 + 41103221 41103248 SVA_F 1814 + 1187 1214 52740 27 chain 4258 chr19 58617616 + 41103286 41103351 SVA_F 1814 + 1024 1089 40635 65 chain 25253 chr19 58617616 + 41153890 41154196 AluY 311 + 6 310 48864 127 2 0 177 chain 156292 chr19 58617616 + 41179722 41181841 SVA_D 2077 + 245 2077 11984 480 0 3 20 16 13 147 2 0 8 3 1 27 15 21 26 1 0 45 0 2 54 0 1 124 144 0 171 0 1 4 155 8 132 0 1 534 2 0 9 chain 7211 chr19 58617616 + 41180690 41180790 SVA_D 2077 + 1344 1444 34640 44 0 1 4 9 8 43 chain 1791 chr19 58617616 + 41180790 41180832 SVA_D 2077 + 992 1034 59553 42 chain 6259 chr19 58617616 + 41181013 41181151 SVA_D 2077 + 1220 1388 41348 37 0 1 4 18 46 43 0 1 36 chain 30478 chr19 58617616 + 41186573 41186965 LTR7 482 + 0 477 41598 86 0 50 88 9 41 42 0 1 82 0 2 85 chain 3674 chr19 58617616 + 41216536 41216575 AluJr4 308 - 255 294 93787 39 chain 13601 chr19 58617616 + 41236867 41237054 MER30 238 + 31 234 64163 72 8 0 11 4 28 92 chain 16075 chr19 58617616 + 41282993 41283278 Tigger2 2703 + 53 353 60926 55 9 20 14 25 20 105 4 8 51 3 8 19 chain 3704 chr19 58617616 + 41366760 41366802 LTR29 598 + 466 508 93588 42 chain 4311 chr19 58617616 + 41433762 41433815 LTR62 707 + 0 53 89436 53 chain 9959 chr19 58617616 + 41438863 41439065 MER30 238 + 0 238 70510 16 9 38 41 12 0 24 15 40 40 10 4 35 chain 9995 chr19 58617616 + 41451735 41451938 L1PB1 5432 + 5241 5422 70438 40 1 0 15 3 0 6 16 6 19 2 0 5 1 0 11 7 5 22 1 0 21 1 0 13 1 0 18 chain 509026 chr19 58617616 + 41486364 41492519 L1PA4 6152 + 10 6151 2806 110 7 8 14 41 56 23 6 5 733 25 0 215 54 46 214 21 21 1754 0 1 4 1 0 748 0 1 277 0 1 221 0 1 341 5 0 7 0 5 1185 0 1 149 chain 14179 chr19 58617616 + 41525661 41525869 L1PA7 6471 + 6261 6470 63347 37 23 24 148 chain 164064 chr19 58617616 + 41537363 41539697 HUERS-P2-int 2744 + 15 2252 11479 16 7 1 23 1 0 31 2 0 5 1 0 53 1 0 19 3 0 10 27 21 35 166 94 4 1 0 55 9 0 50 11 9 17 1 0 29 1 10 6 3 0 84 5 7 401 1 0 21 1 0 330 0 1 205 0 1 699 chain 92317 chr19 58617616 + 41544577 41545607 LTR5A 1029 + 0 1029 19296 147 1 0 882 chain 43533 chr19 58617616 + 41581034 41581544 MER9a1 513 + 0 512 32426 446 1 3 63 chain 8302 chr19 58617616 + 41637246 41637353 MSTB 430 + 2 119 74154 73 1 0 4 0 11 29 chain 132153 chr19 58617616 + 41644273 41645877 SVA_F 1814 + 335 1814 13813 498 25 17 5 1 0 25 1 2 65 78 15 31 5 1 17 1 0 108 49 0 695 chain 5038 chr19 58617616 + 41644893 41644971 SVA_F 1814 + 1011 1089 46810 78 chain 3165 chr19 58617616 + 41645133 41645182 SVA_F 1814 + 1168 1218 46810 46 0 1 3 chain 82657 chr19 58617616 + 41655176 41656271 L1PBa 3878 + 2674 3748 21092 37 3 0 28 0 1 308 1 0 174 13 0 98 8 6 389 3 2 21 2 0 10 chain 496164 chr19 58617616 + 41656796 41663167 L1PA7 6471 + 54 6459 3262 18 0 1 159 26 27 24 16 16 86 2 3 20 4 6 284 21 19 696 0 11 343 0 1 71 10 9 579 0 1 73 6 7 127 1 2 687 1 2 506 63 0 265 1 0 369 0 1 14 0 1 6 1 0 53 1 0 22 21 26 89 0 2 503 0 72 73 21 22 7 1 0 121 0 1 141 2 1 59 3 0 25 17 11 111 0 1 16 0 1 322 4 10 48 0 1 82 1 2 149 chain 105868 chr19 58617616 + 41664182 41665737 L1PB1 5432 + 3920 5422 17582 359 9 11 241 1 0 83 9 7 77 0 6 328 5 7 59 26 5 14 0 1 22 0 3 5 0 4 6 33 10 48 6 5 16 1 0 44 1 0 15 13 1 30 2 0 4 1 0 13 1 0 4 6 5 17 1 0 23 1 0 11 1 0 14 1 0 4 chain 10254 chr19 58617616 + 41689600 41689838 Tigger2 2703 + 2363 2541 69891 13 58 0 19 28 26 120 chain 4645 chr19 58617616 + 41696169 41696323 LTR54 533 + 39 200 87558 31 83 91 10 1 0 29 chain 4118 chr19 58617616 + 41785412 41785529 MER5A1 166 + 0 125 90664 20 37 38 26 8 15 26 chain 87149 chr19 58617616 + 41799985 41800994 LTR13 1007 + 0 1007 20201 304 1 0 77 2 3 513 2 0 110 chain 36959 chr19 58617616 + 42020457 42020881 MER41A 554 + 0 424 36765 424 chain 15018 chr19 58617616 + 42029405 42029594 AluSq10 312 + 80 294 62247 81 2 0 22 0 32 72 5 0 7 chain 3312 chr19 58617616 + 42032998 42033037 L1MB5 1630 + 1271 1310 96900 39 chain 22518 chr19 58617616 + 42043936 42044312 THE1D 372 + 0 372 53097 56 10 1 17 3 0 6 7 11 44 0 4 26 7 11 14 6 4 31 1 0 58 6 5 84 chain 33199 chr19 58617616 + 42414614 42415520 Tigger1 2417 + 54 650 39355 191 52 56 40 1 0 13 361 43 53 0 1 68 22 22 11 4 8 90 chain 26895 chr19 58617616 + 42549082 42549427 THE1B 368 + 9 368 46413 35 8 23 95 1 0 206 chain 125063 chr19 58617616 + 42549427 42551329 THE1B-int 1605 + 0 1605 14689 356 326 0 75 0 25 225 31 34 884 0 1 5 chain 24472 chr19 58617616 + 42551329 42551669 THE1B 368 + 0 368 50075 44 10 39 93 1 0 16 2 0 48 1 3 125 chain 5340 chr19 58617616 + 42558049 42558112 LTR9B 643 + 0 63 84001 63 chain 16576 chr19 58617616 + 42568491 42568690 L1PA5 6144 + 5946 6144 60288 101 1 0 97 chain 60464 chr19 58617616 + 42611754 42612515 MER4E1 777 + 5 777 26248 13 1 2 148 0 3 176 6 5 185 1 9 231 chain 89017 chr19 58617616 + 42616253 42617821 MER61-int 3695 + 850 2053 19854 271 289 51 78 0 1 183 0 9 17 2 0 81 2 0 79 1 6 355 138 0 72 chain 522872 chr19 58617616 + 42714368 42720306 L1PA3long 6157 + 2 6155 2141 5 3 0 145 12 13 259 0 78 274 0 128 1524 0 1 477 0 1 1056 0 2 360 1 0 35 0 2 948 3 7 223 0 2 613 chain 57862 chr19 58617616 + 42795331 42795984 L1PA4 6152 + 5485 6139 27007 332 0 1 321 chain 182681 chr19 58617616 + 42808995 42811014 L1HS 6032 + 454 2477 10458 1512 0 4 507 chain 44924 chr19 58617616 + 42970631 42971176 MER41A 554 + 0 552 31621 377 0 1 90 0 5 25 2 3 51 chain 40334 chr19 58617616 + 42971607 42972146 MER41C 542 + 0 542 34420 49 0 1 270 8 9 26 8 7 116 0 2 62 chain 139688 chr19 58617616 + 43051125 43052617 L1HS 6032 + 4540 6032 13119 1492 chain 44493 chr19 58617616 + 43125898 43126443 MER41A 554 + 0 552 31831 377 0 1 87 1 6 27 1 2 52 chain 35931 chr19 58617616 + 43314011 43314473 LTR2 463 + 0 462 37453 44 7 6 312 12 13 87 chain 20500 chr19 58617616 + 43403344 43403597 L1PA6 6164 + 5894 6162 55786 77 0 21 164 6 0 6 chain 23332 chr19 58617616 + 43413225 43413511 AluY 311 + 0 297 51875 43 1 7 227 0 5 15 chain 82412 chr19 58617616 + 43436794 43437759 LTR13A 966 + 0 966 21147 68 2 1 84 1 4 513 2 0 25 0 1 270 chain 10791 chr19 58617616 + 43448325 43448522 MER66B 489 + 46 261 68878 23 19 37 79 26 26 50 chain 33677 chr19 58617616 + 43510807 43511292 MER1A 529 + 30 529 38949 32 35 35 298 0 9 35 21 26 64 chain 3471 chr19 58617616 + 43512595 43512633 THE1B-int 1605 + 382 420 95454 38 chain 10388 chr19 58617616 + 43514021 43514137 THE1B-int 1605 + 1474 1590 69644 116 chain 65477 chr19 58617616 + 43548027 43548786 SVA_C 1631 + 886 1628 25074 25 1 0 4 23 7 33 2 0 26 0 1 21 0 1 624 chain 3112 chr19 58617616 + 43721768 43721805 MER73 639 + 593 630 98672 37 chain 27112 chr19 58617616 + 43792014 43792734 HSMAR1 1287 + 0 1259 46109 87 309 0 117 19 12 35 24 879 129 chain 16049 chr19 58617616 + 43806694 43806902 MER1A 529 + 320 529 60959 122 2 3 84 chain 18198 chr19 58617616 + 43816695 43817059 THE1B 368 + 0 361 58464 108 16 17 52 38 37 13 27 25 50 18 17 42 chain 124922 chr19 58617616 + 43823812 43825916 L1PB1 5432 + 3603 5427 14721 16 4 16 96 6 1 53 0 1 237 0 12 33 0 5 94 0 4 155 0 1 129 4 9 144 0 4 13 1 0 163 10 17 165 0 4 20 1 2 5 1 0 50 6 7 44 16 14 21 1 0 9 1 0 4 0 1 4 316 14 50 2 1 15 1 0 45 1 0 15 1 0 4 2 0 8 9 0 16 27 22 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 8131 chr19 58617616 + 43937662 43937986 MER4D 903 + 603 888 74559 40 179 140 25 12 11 42 1 2 25 chain 333293 chr19 58617616 + 43970243 43974732 L1PA11 4918 + 3 4507 6161 35 5 4 18 24 19 36 0 2 11 2 0 52 1 0 288 0 3 32 4 1 84 0 1 150 1 5 25 4 0 112 7 13 31 9 12 472 8 0 38 0 5 35 2 0 116 0 4 137 0 4 27 0 1 37 0 1 29 0 1 27 30 0 216 0 5 13 0 4 11 0 4 34 0 4 51 6 7 27 1 0 6 9 18 33 1 5 216 0 4 9 8 2 347 0 4 228 19 12 77 0 4 137 2 3 177 0 4 45 0 1 87 4 0 59 1 0 276 5 3 12 0 5 19 0 4 289 0 3 57 6 5 8 1 0 21 0 1 47 2 0 14 1 0 18 chain 6804 chr19 58617616 + 44046881 44046964 L1PA8 5853 + 5768 5853 78305 26 0 2 57 chain 3380 chr19 58617616 + 44196899 44196936 MLT2F 649 + 611 648 96299 37 chain 130462 chr19 58617616 + 44203320 44204831 SVA_B 1603 + 0 1603 13984 10 2 0 12 0 19 32 5 0 669 1 0 4 4 5 182 2 82 588 chain 320457 chr19 58617616 + 44250028 44253905 L1PA7 6471 + 2581 6470 6398 55 1 2 44 9 13 140 1 0 261 0 4 403 1 0 333 2 0 206 7 6 184 1 0 444 0 4 197 8 5 109 0 1 483 0 5 131 4 0 14 1 0 511 0 1 274 0 4 41 0 2 12 chain 10633 chr19 58617616 + 44280398 44280664 THE1B 368 + 172 356 69167 36 85 3 59 0 1 30 0 1 4 24 22 28 chain 2401 chr19 58617616 + 44280493 44280518 THE1B 368 + 182 207 104155 25 chain 9544 chr19 58617616 + 44330147 44330324 Tigger4a 237 + 26 228 71380 14 15 31 36 4 12 58 13 14 37 chain 3913 chr19 58617616 + 44359116 44359292 LTR50 688 + 393 553 92028 14 24 22 23 13 14 29 59 44 14 chain 3445 chr19 58617616 + 44364687 44364729 MER2 342 + 135 177 95694 42 chain 29885 chr19 58617616 + 44377997 44378347 L1PA4 6152 + 5804 6152 42145 191 8 1 145 0 5 6 chain 67607 chr19 58617616 + 44393663 44394413 L1PA4 6152 + 5394 6143 24542 424 1 0 325 chain 128718 chr19 58617616 + 44404903 44407268 L1PB1 5432 + 3497 5404 14189 150 0 1 82 0 6 40 2 0 84 0 1 365 337 0 112 0 6 196 0 1 85 3 0 125 1 0 4 0 1 41 0 1 6 1 0 210 0 2 13 239 133 6 2 0 49 7 6 13 1 0 45 1 0 7 43 28 11 2 0 5 1 0 14 2 0 24 1 0 22 1 0 12 chain 69244 chr19 58617616 + 44419933 44420860 MER11C 1089 + 0 1052 24170 55 0 91 74 0 5 34 0 3 57 4 21 250 8 9 119 0 1 56 1 9 148 1 0 54 1 0 11 0 1 54 chain 35443 chr19 58617616 + 44432459 44432850 L1PA4 6152 + 5761 6151 37756 137 1 0 253 chain 15136 chr19 58617616 + 44487500 44487711 MER41B 635 + 295 523 62117 15 2 18 180 1 2 13 chain 129504 chr19 58617616 + 44488221 44489753 SVA_D 2077 + 0 2077 14094 14 13 0 15 3 7 232 1 2 314 0 116 61 40 0 151 0 440 36 0 1 4 12 11 87 0 37 549 chain 23746 chr19 58617616 + 44517421 44517721 AluSc8 310 + 10 309 51203 18 4 0 104 0 3 174 chain 3062 chr19 58617616 + 44525756 44525793 MIRb 242 + 96 133 99203 37 chain 36006 chr19 58617616 + 44550672 44551899 L1PB1 5432 + 4847 5420 37413 256 1 2 9 625 0 14 7 6 13 16 11 11 3 1 50 2 1 16 1 0 43 1 0 16 1 0 4 2 0 11 9 0 16 24 19 24 1 0 21 1 0 29 chain 27003 chr19 58617616 + 44563891 44564480 L1PB1 5432 + 4929 5427 46267 174 83 11 24 0 2 6 1 0 12 5 1 8 2 0 53 2 1 10 7 6 44 1 0 15 6 0 6 15 6 19 2 0 5 1 0 4 23 21 13 1 0 22 0 12 18 2 0 5 chain 36800 chr19 58617616 + 44573690 44574165 LTR15 485 + 0 478 36881 107 0 1 16 4 0 25 0 2 25 0 2 98 0 4 157 1 0 5 2 0 14 0 1 21 chain 22141 chr19 58617616 + 44589736 44590120 MSTC 436 + 27 425 53641 76 1 0 3 4 0 6 0 5 24 1 9 28 22 23 34 9 14 14 11 15 141 4 0 6 chain 38996 chr19 58617616 + 44590475 44590938 LTR2 463 + 0 463 35361 463 chain 10439 chr19 58617616 + 44591321 44591493 L1PA8 5853 + 5658 5828 69537 17 8 7 9 1 0 9 6 8 32 2 1 19 1 0 68 chain 76581 chr19 58617616 + 44594095 44595063 LTR5_Hs 974 + 0 974 22420 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 2885 chr19 58617616 + 44606517 44606550 LTR45B 484 + 281 314 100959 33 chain 10750 chr19 58617616 + 44654703 44654856 MER30 238 + 70 236 68952 40 5 21 58 4 1 46 chain 23519 chr19 58617616 + 44670819 44671110 AluSp 311 + 6 302 51555 168 1 6 122 chain 34426 chr19 58617616 + 44913971 44914427 LTR2 463 + 0 463 38411 107 0 1 254 33 35 10 0 4 52 chain 22246 chr19 58617616 + 44929961 44930246 AluSp 311 + 11 289 53482 109 5 0 12 2 0 157 chain 6230 chr19 58617616 + 45047459 45047546 U6 107 + 2 92 80237 40 3 6 44 chain 2945 chr19 58617616 + 45128288 45128383 MER58A 224 + 51 147 100458 20 42 43 5 1 0 9 0 1 18 chain 9051 chr19 58617616 + 45202251 45202376 THE1B 368 + 244 368 72448 62 9 8 54 chain 40035 chr19 58617616 + 45390229 45390717 LTR2C 499 + 3 499 34628 79 2 1 326 4 12 19 0 1 58 chain 23921 chr19 58617616 + 45427327 45427635 AluSg7 307 + 0 300 50914 50 5 4 69 1 0 3 4 0 160 2 0 14 chain 4972 chr19 58617616 + 45539252 45539314 L1MB8 1703 + 1162 1224 85789 62 chain 150121 chr19 58617616 + 45647514 45649224 SVA_D 2077 + 0 2077 12341 30 12 0 7 1 9 393 0 116 143 0 40 138 0 82 31 1 3 44 0 2 175 0 2 42 0 78 17 0 49 676 chain 10275 chr19 58617616 + 45834529 45834671 Tigger4b 360 + 216 360 69857 77 11 13 54 chain 4090 chr19 58617616 + 45859247 45859295 HY1 111 + 63 111 90846 48 chain 4429 chr19 58617616 + 45944882 45944940 L1MB8 1703 + 1526 1585 88738 14 0 1 44 chain 20794 chr19 58617616 + 45963092 45963349 AluSc 308 + 0 251 55365 41 6 0 210 chain 3666 chr19 58617616 + 45983875 45983917 MIR 256 + 79 121 93850 42 chain 6050 chr19 58617616 + 46037268 46037362 L1MCa 1829 + 1075 1169 80897 18 14 14 62 chain 180884 chr19 58617616 + 46049610 46052525 L1PBa 3878 + 29 2577 10552 7 1 0 4 1 0 7 4 1 12 48 40 45 68 18 50 1 0 6 0 1 4 14 12 260 2 1 27 9 8 37 1 0 5 0 1 19 1 0 175 0 2 845 351 39 105 5 4 202 0 2 266 0 3 11 14 11 29 9 0 153 0 4 86 0 16 25 1 0 5 chain 7693 chr19 58617616 + 46177801 46177992 MER4D 903 + 2 190 75645 17 31 32 16 0 1 5 1 0 17 5 3 29 20 19 4 1 0 45 chain 21199 chr19 58617616 + 46363107 46363336 AluYa5 310 + 81 310 54887 229 chain 13370 chr19 58617616 + 46442933 46443120 MER51A 677 + 459 661 64512 57 1 0 50 1 0 4 1 2 15 0 16 58 chain 28700 chr19 58617616 + 46452850 46453156 AluYa5 310 + 5 310 43799 127 1 0 178 chain 28159 chr19 58617616 + 46472182 46472664 LTR46 455 + 0 455 44615 17 1 0 13 0 2 4 1 0 50 2 1 60 40 0 41 0 4 102 17 0 8 0 16 38 25 32 34 0 4 29 chain 15068 chr19 58617616 + 46474089 46474335 MER83B 357 + 58 317 62186 50 8 9 14 10 19 16 15 19 26 1 0 106 chain 22390 chr19 58617616 + 46511635 46512287 MER57A1 433 + 0 423 53289 109 0 83 66 348 33 102 0 3 27 chain 20389 chr19 58617616 + 46547218 46547566 THE1D 372 + 18 370 55900 33 9 0 18 15 17 52 0 10 18 42 44 15 1 0 145 chain 5227 chr19 58617616 + 46548434 46548495 MLT1B 390 + 299 360 84557 61 chain 37278 chr19 58617616 + 46569038 46569500 L1MA3 4352 + 1875 2336 36564 438 1 0 23 chain 10150 chr19 58617616 + 46574650 46574811 THE1C 375 + 0 167 70102 15 2 0 32 16 24 96 chain 7825 chr19 58617616 + 46644408 46644535 THE1B 368 + 243 368 75309 63 8 7 15 8 7 33 chain 5718 chr19 58617616 + 46713354 46713426 HY1 111 + 39 111 82263 72 chain 3178 chr19 58617616 + 46955923 46956034 Tigger4b 360 + 8 159 98120 17 0 1 8 58 97 28 chain 137807 chr19 58617616 + 47009101 47010634 SVA_D 2077 + 6 2075 13279 199 0 11 662 0 535 652 10 0 10 chain 10783 chr19 58617616 + 47163288 47163440 MER2 342 + 58 215 68892 107 5 10 40 chain 5294 chr19 58617616 + 47295397 47295482 LTR16E1 515 + 420 506 84227 63 11 12 11 chain 22946 chr19 58617616 + 47296709 47297152 LTR7 482 + 0 477 52452 79 58 7 15 16 66 57 6 38 23 11 10 17 0 1 52 1 2 52 12 14 44 chain 17544 chr19 58617616 + 47308235 47308447 MER1A 529 + 192 404 59187 212 chain 11314 chr19 58617616 + 47346213 47346373 MER66B 489 + 110 268 68062 40 2 0 52 9 9 57 chain 35497 chr19 58617616 + 47392828 47393269 LTR7 482 + 0 482 37725 224 0 1 25 0 30 34 0 10 158 chain 270030 chr19 58617616 + 47393281 47397073 HERVH-int 3825 + 10 3825 7705 69 1 0 420 0 4 18 0 56 26 0 92 83 2 1 510 6 13 10 19 2 92 45 36 23 344 6 129 4 3 165 1 2 151 1 0 7 0 1 78 0 4 186 0 1 99 0 1 150 0 3 619 14 19 31 8 218 253 3 9 225 chain 35154 chr19 58617616 + 47398315 47398756 LTR7 482 + 0 482 37923 224 0 1 24 1 0 17 0 31 17 0 10 158 chain 47866 chr19 58617616 + 47564559 47565303 L1PB1 5432 + 4716 5427 30341 355 3 0 27 0 7 9 1 0 24 1 0 6 1 0 14 18 12 12 3 0 38 2 1 12 5 3 23 1 2 20 1 0 15 1 0 4 3 0 11 8 0 16 2 0 5 1 0 14 2 0 24 1 0 21 1 0 10 4 3 14 1 0 4 1 0 5 chain 17001 chr19 58617616 + 47591697 47591929 AluSp 311 + 14 276 59801 34 8 36 111 9 11 70 chain 5796 chr19 58617616 + 47700128 47700195 MIR 256 + 44 111 81940 67 chain 32834 chr19 58617616 + 47879560 47879938 L1PA5 6144 + 5765 6144 39641 231 0 1 147 chain 5913 chr19 58617616 + 47901277 47901611 MLT1C 463 + 64 397 81429 51 239 238 44 chain 3245 chr19 58617616 + 47987241 47987357 LTR47A 437 + 0 117 97527 13 36 36 14 20 21 33 chain 5701 chr19 58617616 + 48027182 48027246 THE1B 368 + 2 66 82338 64 chain 4093 chr19 58617616 + 48046179 48046227 L1MC4 1079 + 768 816 90827 48 chain 4832 chr19 58617616 + 48051426 48051505 MADE1 96 - 0 96 86527 38 11 28 30 chain 7067 chr19 58617616 + 48062636 48062722 MLT1B 390 + 32 118 77376 86 chain 25149 chr19 58617616 + 48077194 48077533 L1PB 1623 + 1144 1476 49033 160 10 5 137 1 0 7 2 1 22 chain 4279 chr19 58617616 + 48204960 48205011 MER53 195 + 138 189 89629 51 chain 28144 chr19 58617616 + 48206431 48206817 MER51E 476 + 14 470 44646 32 0 11 94 0 34 109 9 8 27 11 13 64 0 24 40 chain 11926 chr19 58617616 + 48215089 48215228 MER50 708 + 556 695 66956 139 chain 32632 chr19 58617616 + 48265291 48265679 MER41A 554 + 0 388 39830 388 chain 39396 chr19 58617616 + 48269716 48270187 LTR7C 471 + 0 471 35082 418 1 0 31 5 6 16 chain 28029 chr19 58617616 + 48621973 48622286 AluYg6 310 + 0 308 44820 131 3 0 42 2 0 135 chain 4139 chr19 58617616 + 48780453 48780506 MER21C 908 + 185 249 90519 43 0 11 10 chain 35729 chr19 58617616 + 48857540 48857918 SVA_D 2077 + 1688 2066 37580 378 chain 8826 chr19 58617616 + 48882287 48882388 MER41B 635 + 22 123 72932 101 chain 77302 chr19 58617616 + 48889635 48890598 LTR5_Hs 974 + 0 974 22250 288 0 1 178 0 1 188 1 0 163 8 15 31 8 6 64 0 5 34 chain 41335 chr19 58617616 + 48948333 48948821 MER9a3 513 + 14 513 33771 244 1 0 101 1 13 141 chain 79594 chr19 58617616 + 49074733 49075726 LTR13 1007 + 0 1007 21719 73 2 0 308 8 9 169 0 8 119 9 15 114 6 7 185 chain 8539 chr19 58617616 + 49097413 49097538 MER85 139 + 14 139 73596 53 1 2 27 10 9 34 chain 8214 chr19 58617616 + 49141010 49141196 MER63A 208 + 2 200 74377 15 43 59 80 21 17 27 chain 76930 chr19 58617616 + 49266235 49267229 LTR13 1007 + 2 1007 22337 70 3 0 309 8 9 238 2 1 64 3 13 109 0 1 92 0 5 43 22 20 31 chain 122370 chr19 58617616 + 49287765 49289329 THE1A-int 1579 + 0 1574 15129 179 0 6 83 2 1 171 0 2 60 0 1 458 0 9 9 38 19 115 7 11 48 5 6 279 5 12 105 chain 3530 chr19 58617616 + 49506594 49506635 MADE1 96 + 55 96 95013 41 chain 13461 chr19 58617616 + 49628053 49628232 MER107 203 + 0 198 64372 15 0 1 33 3 10 97 1 12 30 chain 38870 chr19 58617616 + 49723098 49723692 LTR14B 630 + 12 627 35454 54 0 1 227 59 80 17 0 9 14 28 20 80 3 1 112 chain 5543 chr19 58617616 + 49749522 49749585 MLT1J 494 + 96 159 83057 63 chain 80396 chr19 58617616 + 49940892 49941891 LTR13 1007 + 0 1007 21548 73 2 0 308 4 5 173 0 8 57 6 5 25 0 2 258 0 1 5 1 2 53 3 1 31 chain 4273 chr19 58617616 + 50015629 50015734 Tigger4a 237 + 130 237 89683 32 1 19 13 32 16 27 chain 145022 chr19 58617616 + 50085713 50087346 SVA_D 2077 + 0 2077 12690 13 1 0 6 5 0 16 3 1 85 0 1 794 1 138 122 0 315 568 1 0 18 chain 6256 chr19 58617616 + 50087346 50087428 L1MC2 1988 + 986 1067 80149 5 1 0 76 chain 14118 chr19 58617616 + 50094718 50094998 L1PB1 5432 + 5158 5420 63428 11 4 2 49 2 1 16 1 0 43 1 0 16 3 0 5 15 7 11 0 3 5 12 6 13 2 0 23 0 1 20 0 3 9 1 0 18 chain 14118 chr19 58617616 + 50109253 50109533 L1PB1 5432 + 5158 5420 63427 11 4 2 49 2 1 16 1 0 43 1 0 16 3 0 5 15 7 11 0 3 5 12 6 13 2 0 23 0 1 20 0 3 9 1 0 18 chain 14118 chr19 58617616 + 50114607 50114887 L1PB1 5432 + 5158 5420 63426 11 4 2 49 2 1 16 1 0 43 1 0 16 3 0 5 15 7 11 0 3 5 12 6 13 2 0 23 0 1 20 0 3 9 1 0 18 chain 13996 chr19 58617616 + 50119957 50120237 L1PB1 5432 + 5158 5420 63600 11 4 2 49 2 1 16 1 0 43 1 0 16 3 0 5 15 7 11 0 3 5 12 6 13 2 0 23 0 1 20 0 3 9 1 0 18 chain 14343 chr19 58617616 + 50125309 50125589 L1PB1 5432 + 5158 5420 63125 11 4 2 49 2 1 16 1 0 43 1 0 16 3 0 5 15 7 11 0 3 5 12 6 13 2 0 23 0 1 20 0 3 9 1 0 18 chain 14343 chr19 58617616 + 50130644 50130924 L1PB1 5432 + 5158 5420 63124 11 4 2 49 2 1 16 1 0 43 1 0 16 3 0 5 15 7 11 0 3 5 12 6 13 2 0 23 0 1 20 0 3 9 1 0 18 chain 13652 chr19 58617616 + 50135986 50136265 L1PB1 5432 + 5158 5419 64083 11 4 2 49 2 1 16 1 0 43 1 0 15 52 38 13 2 0 23 0 1 22 0 3 9 1 0 15 chain 128492 chr19 58617616 + 50140399 50141873 SVA_D 2077 + 6 2075 14221 12 9 1 6 1 0 89 0 5 486 0 116 186 8 0 6 0 488 654 0 3 17 chain 20363 chr19 58617616 + 50278721 50278988 AluSp 311 + 29 282 55934 96 15 1 156 chain 19884 chr19 58617616 + 50540655 50540900 MER1A 529 + 174 416 56557 217 3 0 25 chain 15416 chr19 58617616 + 50598338 50598528 Tigger1 2417 + 1821 2011 61767 68 1 0 115 0 1 6 chain 3679 chr19 58617616 + 50742024 50742065 LTR46 455 + 414 455 93751 41 chain 2879 chr19 58617616 + 50842535 50842569 LTR40a 516 + 387 422 101016 29 0 1 5 chain 17065 chr19 58617616 + 50867044 50867318 LTR47A 437 + 160 411 59737 24 24 15 24 14 0 32 1 0 145 0 1 10 chain 29231 chr19 58617616 + 50954220 50954530 AluYa5 310 + 0 309 42998 132 1 0 177 chain 20551 chr19 58617616 + 51050047 51050273 AluYa5 310 + 87 310 55713 36 3 0 187 chain 21046 chr19 58617616 + 51096073 51096479 L1PB1 5432 + 5054 5424 55066 49 15 11 20 1 0 13 16 11 9 2 0 53 2 1 16 1 0 43 1 0 16 1 0 4 2 0 13 31 19 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 25402 chr19 58617616 + 51109267 51109557 AluSc 308 + 5 295 48620 290 chain 16817 chr19 58617616 + 51139731 51140020 MER51D 577 + 49 351 60015 29 1 0 15 11 4 16 21 20 149 0 23 19 14 13 14 chain 47037 chr19 58617616 + 51230786 51231415 LTR14B 630 + 9 630 30640 342 0 21 21 0 9 22 48 10 196 chain 53020 chr19 58617616 + 51246504 51247171 PABL_B 668 + 0 668 28570 178 0 1 66 1 0 14 6 5 187 5 7 210 chain 19832 chr19 58617616 + 51266250 51266578 Tigger4b 360 + 25 351 56631 32 22 21 38 14 23 164 13 3 45 chain 28230 chr19 58617616 + 51273153 51273452 AluYa5 310 + 0 298 44518 97 1 0 201 chain 6125 chr19 58617616 + 51303987 51304062 L1MA5A 2387 + 2232 2306 80632 63 1 0 11 chain 2829 chr19 58617616 + 51355106 51355136 L1PA4 6152 - 974 1004 101403 30 chain 85690 chr19 58617616 + 51355146 51356101 L1PA4 6152 + 5194 6151 20506 195 0 1 756 0 1 4 chain 9505 chr19 58617616 + 51356127 51356299 MER61F 604 + 428 599 71463 109 42 41 21 chain 27962 chr19 58617616 + 51376128 51377018 MER4A1 472 + 0 472 44930 10 0 4 163 365 100 138 157 0 57 chain 11600 chr19 58617616 + 51428317 51428501 MER61D 487 + 306 487 67568 19 7 6 68 8 7 71 2 1 9 chain 20896 chr19 58617616 + 51453419 51453681 AluSg 306 + 4 267 55259 83 6 7 173 chain 33840 chr19 58617616 + 51551137 51551578 LTR3A 482 + 25 466 38818 137 0 1 101 1 0 113 1 0 12 1 2 12 1 0 39 6 7 17 chain 45114 chr19 58617616 + 51673782 51674261 L1HS 6032 + 4455 4934 31520 479 chain 61418 chr19 58617616 + 51676236 51677080 LTR12 884 + 0 884 26008 66 0 41 168 1 0 102 2 0 68 29 30 66 5 6 25 6 8 57 1 0 72 1 0 175 chain 6084 chr19 58617616 + 51722833 51722930 MER33 330 + 198 292 80783 10 1 0 46 2 1 33 1 0 4 chain 23191 chr19 58617616 + 51733351 51733704 L1PA8 5853 + 5506 5853 52093 58 1 0 44 2 0 15 8 6 52 1 0 7 6 0 7 10 9 36 2 1 16 4 12 84 chain 224678 chr19 58617616 + 51757178 51759629 L1PA3long 6157 + 3700 6155 8904 1524 0 1 4 1 0 283 0 4 639 chain 19428 chr19 58617616 + 51773031 51773369 THE1C 375 + 1 336 57107 13 2 0 73 1 2 20 21 25 25 1 0 27 7 8 34 13 9 24 2 0 75 chain 18024 chr19 58617616 + 51786356 51786585 L1PA7 6471 + 6227 6455 58629 54 1 0 137 0 9 7 9 0 21 chain 44187 chr19 58617616 + 51787118 51787670 MER41A 554 + 0 554 32019 134 4 3 290 0 1 78 0 1 37 0 1 9 chain 3216 chr19 58617616 + 51846350 51846385 MLT1A 405 + 91 126 97746 35 chain 10440 chr19 58617616 + 51890537 51890661 LTR3A 482 + 0 126 69536 109 0 1 5 0 1 10 chain 79182 chr19 58617616 + 51905691 51906661 LTR5_Hs 974 + 0 974 21810 467 0 1 188 0 1 119 7 7 25 0 1 93 0 1 71 chain 78333 chr19 58617616 + 51906707 51907754 MER11C 1089 + 0 1063 22020 247 7 16 50 0 4 69 1 0 177 16 15 112 1 5 4 1 0 38 0 1 127 0 1 54 1 0 119 1 2 22 chain 23411 chr19 58617616 + 51910619 51910901 L1PA6 6164 + 5869 6152 51742 139 0 1 143 chain 34423 chr19 58617616 + 51913284 51913713 LTR3 431 + 0 431 38414 263 12 13 68 0 1 86 chain 12400 chr19 58617616 + 51923036 51923208 MER30 238 + 39 225 66139 19 0 5 43 3 0 15 5 17 87 chain 67174 chr19 58617616 + 51923918 51924685 L1PA7 6471 + 5689 6457 24655 195 0 1 572 chain 74580 chr19 58617616 + 51952841 51953652 SVA_D 2077 + 1207 2077 22938 145 0 49 328 0 10 338 chain 29053 chr19 58617616 + 51971425 51971880 LTR3A 482 + 3 482 43246 153 7 16 11 10 24 54 12 10 98 0 2 24 16 15 32 0 1 10 1 2 27 chain 28575 chr19 58617616 + 51975874 51976415 LTR3A 482 + 0 442 43991 15 7 0 43 0 1 59 7 8 35 0 12 20 122 14 55 1 0 86 0 1 32 3 6 20 1 0 35 chain 2651 chr19 58617616 + 51976060 51976091 LTR3A 482 + 207 238 102718 31 chain 29340 chr19 58617616 + 51981020 51981419 LTR3A 482 + 0 421 42821 157 6 15 21 0 14 59 7 6 117 0 1 18 1 0 13 chain 5808 chr19 58617616 + 51981943 51982013 LTR56 451 + 12 82 81887 70 chain 39842 chr19 58617616 + 52024481 52024991 LTR5_Hs 974 + 0 504 34779 409 15 5 45 0 4 41 chain 6792 chr19 58617616 + 52027961 52028039 LTR5_Hs 974 + 349 427 78349 78 chain 75965 chr19 58617616 + 52043131 52044100 LTR5_Hs 974 + 0 974 22590 169 1 0 116 0 1 181 0 1 183 6 5 163 8 15 19 20 18 103 chain 297247 chr19 58617616 + 52052691 52056132 L1P2 5180 + 1729 5174 6914 478 0 2 71 6 1 695 1 2 236 0 1 111 0 1 915 1 2 75 0 1 40 0 4 724 2 1 47 1 0 38 chain 29846 chr19 58617616 + 52056455 52057003 MER11A 1151 + 154 1151 42189 23 8 0 53 1 0 64 4 0 14 58 501 14 16 49 11 18 0 37 0 1 51 17 16 76 0 4 83 chain 60965 chr19 58617616 + 52057020 52057719 L1PA5 6144 + 5442 6141 26117 699 chain 3007 chr19 58617616 + 52059873 52059906 MER51A 677 + 383 416 99778 33 chain 34100 chr19 58617616 + 52090741 52091150 LTR3 431 + 6 417 38633 109 0 1 227 0 1 73 chain 30827 chr19 58617616 + 52096376 52096800 LTR10C 591 + 11 434 41287 22 2 0 264 1 0 59 25 27 51 chain 6165 chr19 58617616 + 52097365 52097481 MLT1B-int 1170 + 986 1094 80467 40 10 7 43 11 6 12 chain 3668 chr19 58617616 + 52098102 52098147 MLT1B 390 + 38 83 93843 45 chain 7116 chr19 58617616 + 52106046 52106152 MER4-int 2692 + 1490 1591 77207 17 6 1 83 chain 4378 chr19 58617616 + 52135761 52135839 Tigger2 2703 + 1391 1513 89012 35 10 39 11 0 15 22 chain 15384 chr19 58617616 + 52173729 52173970 MSTA 426 + 184 426 61806 21 43 44 177 chain 26479 chr19 58617616 + 52176631 52177046 LTR3A 482 + 27 434 47014 82 0 1 5 0 1 28 0 1 83 43 44 30 13 0 38 0 1 32 0 7 3 6 0 23 1 0 28 chain 3679 chr19 58617616 + 52178663 52178705 LTR7 482 + 433 476 93748 20 0 1 22 chain 4911 chr19 58617616 + 52185103 52185170 MLT1A0 366 + 81 148 86105 4 0 1 5 1 0 57 chain 5076 chr19 58617616 + 52255969 52256026 MLT1C 463 + 46 103 85264 57 chain 31208 chr19 58617616 + 52484545 52484943 LTR7 482 + 0 469 40967 69 8 46 109 0 1 33 0 32 179 chain 71933 chr19 58617616 + 52485537 52486432 LTR5_Hs 974 + 0 910 23562 153 0 2 303 0 4 266 5 6 42 7 7 112 0 8 7 chain 77438 chr19 58617616 + 52558696 52559661 LTR5_Hs 974 + 0 974 22210 19 0 2 327 0 1 110 0 4 229 0 2 16 1 3 63 7 7 128 1 0 9 1 0 54 chain 78231 chr19 58617616 + 52577374 52578615 LTR13A 966 + 11 966 22043 123 0 22 441 0 8 27 320 0 290 3 6 19 0 1 18 chain 3140 chr19 58617616 + 52607970 52608027 MER83 447 + 0 56 98467 34 11 10 12 chain 20128 chr19 58617616 + 52616863 52617164 L1PA8 5853 + 5524 5818 56222 40 1 0 45 2 0 56 15 14 9 1 0 52 2 1 19 1 0 58 chain 284906 chr19 58617616 + 52628194 52631810 HERVH-int 3825 + 0 3825 7286 47 1 2 284 1 0 197 1 0 15 0 1 24 2 1 9 1 0 12 4 0 7 0 32 14 9 7 4 1 0 26 26 1 15 2 1 22 30 9 10 0 1 38 0 1 63 0 3 5 1 2 236 6 4 131 16 0 461 4 31 370 11 16 584 13 12 227 1 0 145 9 11 39 8 218 260 0 2 149 0 1 75 chain 44852 chr19 58617616 + 52658548 52659098 LTR22 571 + 0 571 31665 251 3 4 124 0 1 59 0 16 83 0 3 30 chain 29213 chr19 58617616 + 52665502 52665878 LTR10F 562 + 0 490 43028 127 6 104 19 0 16 224 chain 73463 chr19 58617616 + 52667326 52668303 HERVIP10FH-int 2884 + 149 1126 23228 60 6 0 190 2 1 183 0 2 149 0 3 175 51 52 136 0 1 25 chain 41800 chr19 58617616 + 52669974 52670554 LTR10F 562 + 0 562 33488 229 1 4 29 25 0 8 0 1 127 4 7 93 3 2 21 0 1 40 chain 92069 chr19 58617616 + 52676061 52677134 SVA_F 1814 + 63 1814 19330 86 11 0 285 0 1 19 2 679 43 3 6 27 4 0 579 0 12 14 chain 39057 chr19 58617616 + 52688724 52689307 LTR61 567 + 3 561 35314 19 3 0 33 17 11 19 6 0 142 20 9 283 5 7 5 1 0 30 chain 40648 chr19 58617616 + 52694308 52694809 LTR2B 499 + 0 499 34189 14 1 0 57 1 0 237 0 1 10 1 0 180 chain 10256 chr19 58617616 + 52740757 52740958 LTR5B 1012 + 0 223 69887 49 1 0 5 39 49 25 1 0 6 7 21 68 chain 11261 chr19 58617616 + 52743398 52743573 MER4A1 472 + 0 178 68149 18 0 1 55 15 17 87 chain 74985 chr19 58617616 + 52768735 52769738 LTR13 1007 + 0 1007 22846 73 6 1 6 0 3 298 8 9 74 0 3 10 3 0 151 2 1 53 1 5 13 0 3 112 0 1 140 22 20 31 chain 8372 chr19 58617616 + 52792266 52792439 MER4A1 472 + 0 178 73967 12 0 1 8 4 5 50 7 9 37 29 30 26 chain 172103 chr19 58617616 + 52810917 52812781 SVA_E 1901 + 0 1901 10992 145 3 0 179 3 0 493 1 0 19 1 0 91 1 47 121 1 0 806 chain 18692 chr19 58617616 + 52905182 52905442 LTR7 482 + 125 419 57909 100 0 1 30 8 39 17 0 1 52 1 2 52 chain 112200 chr19 58617616 + 52919195 52920490 SVA_D 2077 + 62 1863 16787 144 4 3 57 0 11 202 0 39 352 2 360 70 0 1 2 0 98 462 chain 33328 chr19 58617616 + 52923628 52924121 LTR2B 499 + 9 499 39236 5 1 0 55 5 0 41 0 19 142 0 1 4 0 3 17 28 1 18 0 4 89 6 9 82 chain 83104 chr19 58617616 + 52931630 52932596 LTR13A 966 + 0 966 20999 966 chain 66708 chr19 58617616 + 53020392 53023735 L1PA13 3608 + 224 1445 24775 54 11 17 118 1 0 15 1 0 17 2 0 16 6 2 18 1 0 19 18 20 12 1 0 99 2 0 97 0 5 35 25 56 21 0 1 46 2290 156 58 1 0 100 35 15 224 chain 63586 chr19 58617616 + 53032477 53033328 HERVL-int 5654 + 3521 4394 25507 181 1 10 197 29 23 13 1 5 325 1 0 27 0 16 76 chain 10972 chr19 58617616 + 53035723 53035903 MER50 708 + 391 570 68592 33 17 16 41 1 0 21 4 5 63 chain 8322 chr19 58617616 + 53053400 53053504 L1PREC2 3366 + 1786 1890 74109 104 chain 19247 chr19 58617616 + 53055544 53056497 MER50 708 + 392 694 57298 40 0 8 44 1 0 4 18 19 13 7 0 49 646 0 12 6 0 113 chain 4971 chr19 58617616 + 53064747 53064811 MLT1D 503 + 434 499 85793 40 0 1 24 chain 11688 chr19 58617616 + 53079747 53080101 L1PA17 2846 + 1347 1545 67417 32 3 7 12 162 1 7 1 0 22 6 8 109 chain 9261 chr19 58617616 + 53131091 53131191 MER30 238 + 138 238 72000 100 chain 125313 chr19 58617616 + 53222231 53223647 SVA_D 2077 + 0 2077 14652 20 4 0 522 0 80 145 0 40 79 1 536 307 0 10 338 chain 25723 chr19 58617616 + 53225665 53226011 MER66A 478 + 33 380 48137 321 11 12 14 chain 4581 chr19 58617616 + 53246346 53246396 L1MA10 1535 + 874 924 87898 50 chain 79030 chr19 58617616 + 53257598 53258654 LTR13 1007 + 0 1007 21862 73 2 0 85 0 1 222 4 5 109 0 1 5 7 11 18 0 4 95 1 0 65 4 5 151 58 0 157 chain 9509 chr19 58617616 + 53303259 53303374 L1PB1 5432 + 4980 5095 71450 115 chain 10915 chr19 58617616 + 53357833 53357968 MER41A 554 + 216 351 68677 135 chain 11723 chr19 58617616 + 53358907 53359039 LTR7B 505 + 0 133 67359 93 0 1 39 chain 199215 chr19 58617616 + 53359094 53362823 HERVK-int 6823 + 3792 6414 9741 77 0 5 662 3 1 172 1011 0 405 6 5 34 1 5 110 0 3 238 6 5 13 1 0 194 5 4 23 1 0 100 1 0 36 1 0 122 1 0 51 3 0 4 1 0 9 4 2 74 3 1 7 1 0 24 17 11 11 1 0 20 203 126 12 1 0 13 4 2 13 5 3 25 chain 3858 chr19 58617616 + 53425966 53426012 LTR13A 966 + 875 922 92418 11 0 1 35 chain 8989 chr19 58617616 + 53496519 53496643 MER4A 717 + 1 136 72580 16 0 14 96 3 0 9 chain 60284 chr19 58617616 + 53586968 53587616 SVA_D 2077 + 1417 2075 26302 312 0 10 336 chain 6828 chr19 58617616 + 53642568 53642648 LTR22 571 + 475 555 78208 80 chain 10415 chr19 58617616 + 53649589 53650783 MER57A1 433 + 0 433 69581 113 1043 282 38 chain 9227 chr19 58617616 + 53653684 53653790 U6 107 + 0 106 72060 106 chain 13078 chr19 58617616 + 53781896 53782049 L1PA7 6471 + 6311 6464 64968 153 chain 41061 chr19 58617616 + 53831403 53831854 LTR7 482 + 0 482 33928 265 0 31 186 chain 278325 chr19 58617616 + 53831856 53835639 HERVH-int 3825 + 0 3825 7480 466 4 64 15 39 106 5 1 0 41 1 0 59 0 1 6 0 2 14 0 3 51 0 3 564 51 44 21 28 0 3 310 0 206 15 42 107 1 0 192 0 10 81 0 2 148 1 0 14 0 1 821 0 3 25 8 218 262 0 2 223 chain 41286 chr19 58617616 + 53836897 53837348 LTR7 482 + 0 482 33793 265 0 31 186 chain 22950 chr19 58617616 + 53838055 53838572 L1PB1 5432 + 4933 5409 52445 89 6 8 73 7 0 11 5 0 23 1 0 5 3 2 14 24 18 44 18 16 46 7 6 8 1 0 6 53 39 5 2 0 24 1 0 22 2 1 11 1 0 5 chain 81057 chr19 58617616 + 53838625 53839592 LTR5_Hs 974 + 0 974 21422 285 0 1 536 4 12 37 2 0 103 chain 22459 chr19 58617616 + 53839593 53839875 AluSp 311 + 14 297 53182 262 5 6 15 chain 9477 chr19 58617616 + 54026846 54027022 MER5A 189 + 11 168 71535 89 4 0 12 43 28 28 chain 82486 chr19 58617616 + 54036766 54037721 LTR13A 966 + 0 953 21136 76 0 4 582 6 0 291 chain 8842 chr19 58617616 + 54151431 54151529 BC200 147 + 5 103 72887 98 chain 15875 chr19 58617616 + 54300801 54301156 L1PB1 5432 + 5107 5427 61190 8 5 0 21 10 8 14 4 0 10 2 0 51 1 0 12 6 5 44 1 0 16 1 0 4 2 0 11 8 0 13 27 22 24 1 0 20 6 5 9 1 0 5 0 2 11 2 0 5 chain 4312 chr19 58617616 + 54315132 54315178 L1PREC2 3366 + 1122 1168 89434 46 chain 16761 chr19 58617616 + 54328726 54329085 THE1B 368 + 0 368 60080 101 22 16 14 7 11 35 70 82 47 14 13 49 chain 5870 chr19 58617616 + 54348979 54349049 L1P4e 1373 + 24 94 81597 70 chain 24283 chr19 58617616 + 54404694 54404992 AluSp 311 + 0 296 50359 36 1 0 89 1 0 171 chain 26203 chr19 58617616 + 54544988 54546062 LTR7B 505 + 0 497 47412 105 0 10 46 0 2 8 22 37 22 3 0 7 662 21 53 9 50 80 14 13 43 chain 2929 chr19 58617616 + 54545231 54545262 LTR7B 505 + 258 289 100591 31 chain 4321 chr19 58617616 + 54545338 54545398 LTR7B 505 + 208 289 89349 26 2 23 32 chain 2040 chr19 58617616 + 54545815 54545843 LTR7B 505 + 208 234 106108 19 2 0 7 chain 20472 chr19 58617616 + 54581635 54581853 L1HS 6032 + 4337 4555 55811 218 chain 32815 chr19 58617616 + 54613184 54613545 L1PA3long 6157 + 5786 6147 39657 361 chain 6385 chr19 58617616 + 54616319 54616410 MER4E 760 + 646 752 79727 32 1 15 21 0 1 37 chain 37143 chr19 58617616 + 54679941 54681271 PRIMA4_LTR 623 + 0 605 36651 38 12 12 125 0 23 48 710 12 59 1 0 31 1 0 20 16 18 41 51 0 119 5 7 37 2 1 14 chain 15232 chr19 58617616 + 54690836 54691037 L1PA7 6471 + 6267 6464 61998 17 0 1 30 6 1 148 chain 67500 chr19 58617616 + 54943735 54944664 LTR5_Hs 974 + 0 974 24578 168 11 20 271 0 4 12 0 5 146 10 9 23 1 2 9 8 10 13 0 2 82 7 7 34 5 6 9 0 22 120 chain 24493 chr19 58617616 + 54952752 54954245 MER41A 554 + 0 387 50041 14 0 1 80 249 0 25 1 4 46 891 29 158 3 4 26 chain 19494 chr19 58617616 + 54977197 54977436 AluSp 311 + 58 297 57038 239 chain 20976 chr19 58617616 + 54978603 54978863 AluSc 308 + 28 297 55164 32 0 8 40 2 3 186 chain 16137 chr19 58617616 + 55016793 55017058 AluSc 308 + 20 298 60842 44 2 0 114 1 33 26 33 23 24 7 0 14 chain 57361 chr19 58617616 + 55022397 55023073 L1PA10 4194 + 3461 4150 27143 31 0 13 580 0 3 28 3 0 34 chain 3384 chr19 58617616 + 55036090 55036143 L1PB3 3668 + 3511 3562 96247 17 3 1 33 chain 83380 chr19 58617616 + 55059689 55060689 LTR5A 1029 + 0 1029 20948 13 0 4 116 1 14 621 15 21 156 0 6 78 chain 37143 chr19 58617616 + 55107422 55107841 L1PA5 6144 + 5704 6132 36649 157 0 2 136 0 7 126 chain 27094 chr19 58617616 + 55122804 55123222 LTR7B 505 + 0 505 46134 43 2 1 62 1 11 54 19 32 32 4 25 51 0 41 40 0 4 45 10 8 4 0 1 51 chain 234391 chr19 58617616 + 55123222 55127058 HERVH-int 3825 + 0 3825 8624 333 1 0 77 21 20 27 14 18 10 1 0 28 1 266 48 11 14 385 51 21 185 22 13 107 0 1 62 1 20 451 13 18 304 0 1 5 5 4 170 309 1 73 14 15 142 0 367 57 345 17 150 39 39 233 0 2 141 chain 25066 chr19 58617616 + 55129155 55129520 LTR7B 505 + 0 487 49171 108 0 10 43 0 2 8 13 81 43 0 2 14 9 50 80 14 13 33 chain 3807 chr19 58617616 + 55162723 55162769 MER2 342 + 161 207 92789 46 chain 6459 chr19 58617616 + 55192464 55192539 Tigger2a 444 + 304 379 79485 75 chain 4523 chr19 58617616 + 55193531 55193661 MER20 218 + 45 173 88195 32 59 58 21 1 0 17 chain 3398 chr19 58617616 + 55201572 55201609 MER3 215 - 125 162 96084 37 chain 42405 chr19 58617616 + 55411855 55412561 L1PB2 3958 + 2946 3836 33126 111 55 254 42 9 8 16 12 10 33 2 0 14 7 4 13 3 0 94 1 2 70 1 0 64 1 0 49 0 3 20 2 0 21 2 1 38 4 1 22 chain 24796 chr19 58617616 + 55418799 55419107 AluSc5 308 + 0 308 49595 149 1 2 106 1 0 51 chain 2109 chr19 58617616 + 55420095 55420177 MER52C 1267 + 892 958 105767 16 14 0 8 28 26 16 chain 3461 chr19 58617616 + 55421079 55421120 MLT1B 390 + 281 321 95540 36 1 0 4 chain 6742 chr19 58617616 + 55733769 55733919 MER4E 760 + 334 498 78505 26 39 54 24 7 6 54 chain 43216 chr19 58617616 + 55802161 55803027 L1PREC2 3366 + 2215 3042 32637 115 11 14 15 4 9 15 14 0 66 0 1 4 13 12 9 1 0 6 1 8 39 5 8 30 0 2 24 1 0 19 0 1 95 1 0 6 1 2 8 0 1 28 17 11 36 15 14 37 1 0 3 3 0 14 29 21 17 6 1 16 2 0 20 46 29 27 14 12 32 chain 7953 chr19 58617616 + 55818820 55819018 LTR55 556 + 3 217 74993 19 2 16 11 72 74 94 chain 557205 chr19 58617616 + 55822401 55828429 L1PA2 6032 + 2 6032 288 2253 0 2 3775 chain 5465 chr19 58617616 + 55843735 55843813 MADE1 96 + 0 96 83379 33 4 22 41 chain 5005 chr19 58617616 + 55890708 55890785 Tigger4a 237 + 143 237 85641 43 6 23 28 chain 85602 chr19 58617616 + 55928735 55929780 L1PA7 6471 + 5406 6466 20520 25 0 1 160 7 11 20 3 7 68 0 2 105 0 3 485 5 6 167 chain 40318 chr19 58617616 + 55937792 55938330 MER41A 554 + 1 552 34435 185 6 7 188 0 1 13 2 3 7 0 4 21 0 1 38 0 5 47 0 1 4 1 0 26 chain 28079 chr19 58617616 + 55995036 55995363 L1PA6 6164 + 5832 6161 44751 319 0 2 8 chain 29404 chr19 58617616 + 56006090 56006437 L1PA5 6144 + 5799 6143 42728 333 4 1 10 chain 14398 chr19 58617616 + 56078480 56078667 MER107 203 + 0 203 63038 156 1 17 30 chain 14268 chr19 58617616 + 56124545 56124817 L1MB3 1562 + 1234 1477 63240 105 15 14 63 51 24 28 1 0 9 chain 26417 chr19 58617616 + 56218374 56218669 AluY 311 + 15 311 47097 117 0 1 178 chain 36774 chr19 58617616 + 56234443 56234919 LTR2B 499 + 9 499 36905 5 1 0 55 4 0 42 0 19 176 0 1 10 1 0 182 chain 3746 chr19 58617616 + 56235888 56235934 MER51E 476 + 143 189 93288 46 chain 6173 chr19 58617616 + 56313952 56314105 MER20 218 + 29 171 80442 47 70 59 36 chain 48047 chr19 58617616 + 56324723 56325307 LTR66 600 + 0 598 30276 408 2 0 48 0 16 126 chain 11839 chr19 58617616 + 56335157 56335424 L1PA13 3608 + 113 361 67133 25 3 0 26 2 1 12 7 4 24 27 13 36 13 17 18 8 6 66 chain 23345 chr19 58617616 + 56340910 56341480 L1P2 5180 + 842 1711 51856 39 255 553 67 9 10 200 chain 195559 chr19 58617616 + 56357646 56360544 L1PA10 4194 + 1466 4055 9859 71 1 0 399 314 0 172 0 1 7 1 0 110 0 4 380 1 2 4 1 0 41 4 0 53 1 3 310 0 1 84 0 1 16 2 0 154 6 7 146 5 9 437 1 0 177 chain 48133 chr19 58617616 + 56371267 56371881 PABL_A 660 + 31 660 30247 37 0 5 11 9 20 5 2 0 237 4 3 91 0 2 218 chain 2842 chr19 58617616 + 56470061 56470093 MIRb 242 + 67 99 101289 32 chain 60365 chr19 58617616 + 56499357 56500113 MER4E 760 + 0 760 26270 164 1 0 217 0 4 229 7 6 130 0 2 8 chain 5424 chr19 58617616 + 56505670 56505737 MLT1B 390 + 22 89 83585 67 chain 5218 chr19 58617616 + 56505916 56505976 Tigger3c 601 + 477 537 84595 60 chain 131269 chr19 58617616 + 56526068 56527686 L1P3 4156 + 0 1661 13893 251 1 0 63 8 6 88 5 6 80 7 20 264 0 1 4 1 0 2 0 23 42 1 0 382 0 8 23 0 2 396 chain 29095 chr19 58617616 + 56611975 56612576 L1PB3 3668 + 3115 3614 43194 22 1 6 54 0 2 92 1 0 100 1 0 69 9 0 3 14 0 15 76 4 18 5 3 25 11 9 29 23 18 11 7 4 15 chain 5353 chr19 58617616 + 56630714 56630879 L1PB1 5432 + 5274 5424 83938 6 1 0 16 1 0 4 56 47 23 1 0 22 1 0 12 2 1 15 1 0 4 chain 3021 chr19 58617616 + 56709855 56709893 MER74A 558 + 465 506 99642 33 0 3 5 chain 24069 chr19 58617616 + 56745812 56746102 L1PA8A 6298 + 5364 5651 50701 49 1 0 76 3 1 161 chain 4261 chr19 58617616 + 56773575 56773626 L1MB2 1706 + 1643 1694 89754 51 chain 6117 chr19 58617616 + 56798116 56798212 LOR1-int 1871 + 99 192 80673 4 1 0 58 6 5 4 1 0 22 chain 44815 chr19 58617616 + 56798339 56798950 L1PA11 4918 + 3898 4497 31693 90 1 0 4 0 1 214 0 1 123 3 0 54 29 23 67 2 0 13 1 0 4 1 0 5 chain 6674 chr19 58617616 + 56799670 56799935 L1ME2z 1083 + 649 867 78720 33 20 8 47 1 0 9 128 94 27 chain 124857 chr19 58617616 + 56852158 56854596 THE1B-int 1605 + 15 1605 14731 15 3 6 37 1 0 110 1 0 247 1 26 14 874 0 717 1 0 170 0 1 247 chain 10147 chr19 58617616 + 56855182 56855309 THE1B-int 1605 + 1478 1605 70115 127 chain 2451 chr19 58617616 + 56865853 56865898 MER53 195 - 43 86 103901 12 5 3 28 chain 53649 chr19 58617616 + 56871083 56872096 MER4E1 777 + 0 769 28345 19 1 2 171 0 1 229 313 2 114 10 75 156 chain 18594 chr19 58617616 + 56901819 56902205 L1PB1 5432 + 5073 5424 57999 30 3 0 11 3 0 24 1 0 9 17 12 8 2 0 53 2 1 16 1 0 20 0 2 22 1 0 15 3 0 17 31 19 14 3 1 23 1 0 10 0 1 10 1 0 10 1 0 19 1 0 4 chain 25786 chr19 58617616 + 56913162 56913520 L1PA8 5853 + 5311 5853 48037 11 0 186 56 1 0 45 3 1 11 0 2 56 1 0 13 0 1 47 2 1 16 5 4 8 0 1 83 chain 4955 chr19 58617616 + 56943105 56943183 MER33 330 + 105 184 85869 34 11 12 33 chain 9807 chr19 58617616 + 56982279 56982441 Tigger4a 237 + 5 153 70805 49 1 0 12 24 11 76 chain 23239 chr19 58617616 + 56989937 56990339 L1PA16 3655 + 3193 3590 52021 8 1 0 34 76 74 123 1 0 49 0 2 95 3 0 12 chain 2875 chr19 58617616 + 56997317 56997351 L1MA7 2200 + 2006 2040 101030 34 chain 3381 chr19 58617616 + 57014600 57014641 MSTA 426 + 385 426 96280 41 chain 12071 chr19 58617616 + 57023592 57023746 MER50 708 + 548 708 66714 8 0 6 146 chain 20032 chr19 58617616 + 57036931 57037191 MLT2A1 477 + 172 477 56341 31 3 4 178 2 46 46 chain 7051 chr19 58617616 + 57042570 57042710 Tigger3a 397 + 38 237 77438 34 22 71 14 8 18 62 chain 11766 chr19 58617616 + 57048282 57048463 L1PB2 3958 + 3626 3803 67277 42 16 15 70 3 1 21 1 0 28 chain 9873 chr19 58617616 + 57050174 57050352 L1PA8 5853 + 5638 5848 70676 32 30 28 42 2 1 19 1 0 42 0 36 10 chain 18937 chr19 58617616 + 57051375 57051741 THE1D 372 + 0 370 57610 66 35 36 38 0 1 25 78 80 124 chain 3404 chr19 58617616 + 57067661 57067703 MIR 256 + 67 109 96028 42 chain 74110 chr19 58617616 + 57148716 57149514 L1PA2 6032 + 5231 6029 23065 798 chain 26784 chr19 58617616 + 57200018 57200337 HERVL-int 5654 + 336 659 46564 83 0 2 52 2 4 182 chain 4822 chr19 58617616 + 57264102 57264158 MER74A 558 + 480 537 86593 17 0 1 39 chain 37631 chr19 58617616 + 57438099 57438586 LTR3B_ 500 + 6 500 36318 72 1 0 180 6 7 38 0 1 38 9 11 4 0 1 92 0 3 47 chain 6562 chr19 58617616 + 57452253 57452503 MSTD 398 + 58 320 79110 57 125 148 18 23 12 27 chain 90160 chr19 58617616 + 57482584 57483783 SVA_C 1631 + 39 1183 19654 501 40 0 130 0 40 107 29 20 29 85 0 44 2 0 4 1 0 36 2 0 14 1 0 14 0 45 160 chain 2608 chr19 58617616 + 57483085 57483114 SVA_C 1631 + 464 493 98379 29 chain 3308 chr19 58617616 + 57483420 57483466 SVA_C 1631 + 1045 1091 69283 46 chain 2233 chr19 58617616 + 57483466 57483505 SVA_C 1631 + 922 959 58810 30 2 0 7 chain 3593 chr19 58617616 + 57548325 57548418 L1MA1 4479 + 4107 4189 94484 35 40 29 18 chain 3183 chr19 58617616 + 57724319 57724352 MER30 238 + 205 238 98041 33 chain 386872 chr19 58617616 + 57729119 57733433 L1PA4 6152 + 1831 6152 5375 855 2 1 280 0 1 96 0 1 399 0 6 509 2 1 895 0 1 423 0 3 845 3 0 5 chain 81545 chr19 58617616 + 57738216 57739204 LTR13 1007 + 0 1007 21327 73 2 0 273 0 20 15 4 5 58 2 0 184 2 1 65 1 4 309 chain 19767 chr19 58617616 + 57797576 57797857 AluSp 311 + 12 300 56715 27 7 24 212 0 2 11 12 0 12 chain 68142 chr19 58617616 + 57810329 57811568 LTR5_Hs 974 + 2 974 24420 146 1 2 141 0 22 85 0 8 28 0 3 22 0 4 72 1 0 227 6 21 20 1 0 4 0 1 5 32 21 33 308 0 44 1 0 58 0 1 4 chain 30892 chr19 58617616 + 57815302 57815723 LTR2 463 + 0 463 41223 57 1 4 53 0 1 12 0 3 255 23 58 20 chain 26634 chr19 58617616 + 57827476 57827799 LTR2 463 + 138 463 46784 29 0 2 294 chain 8180 chr19 58617616 + 57867262 57867352 5S 121 + 0 90 74464 90 chain 3900 chr19 58617616 + 57886480 57886526 LTR62 707 + 0 46 92118 46 chain 28199 chr19 58617616 + 57890901 57891241 MER41A 554 + 18 368 44566 46 0 10 294 chain 109923 chr19 58617616 + 57896192 57897740 HERVK14-int 1672 + 115 1659 17086 136 5 9 27 28 33 19 2 0 229 8 7 40 1 0 204 1 0 166 1 0 72 18 14 33 4 3 139 7 8 54 1 0 38 0 1 65 6 5 60 1 0 31 1 0 11 1 0 77 0 1 62 chain 44080 chr19 58617616 + 57918766 57919669 LTR10C 591 + 0 591 32098 44 0 1 90 1 0 89 0 2 19 0 4 52 0 4 9 1 0 21 1 0 41 10 11 42 4 0 79 0 2 35 319 0 46 chain 3957 chr19 58617616 + 58027384 58027448 LTR62 707 + 641 707 91705 19 7 9 38 chain 8503 chr19 58617616 + 58106001 58106116 Tigger1 2417 + 1473 1585 73672 31 3 0 81 chain 29116 chr19 58617616 + 58106420 58106732 AluYa5 310 + 0 310 43166 132 2 0 178 chain 157543 chr19 58617616 + 58146517 58148409 SVA_D 2077 + 3 2077 11911 19 2 0 522 0 40 233 40 0 91 7 4 31 45 5 86 2 4 54 1 2 63 0 1 62 1 0 10 2 226 220 0 3 244 2 0 136 1 0 18 chain 3747 chr19 58617616 + 58147462 58147507 SVA_D 2077 + 1130 1175 44772 45 chain 38567 chr19 58617616 + 58148897 58149437 MER41A 554 + 0 554 35666 26 2 0 154 2 5 48 3 15 242 2 0 5 9 13 34 1 0 12 chain 17189 chr19 58617616 + 58157780 58158028 LTR12C 1709 + 776 1079 59582 61 1 0 52 1 0 88 1 42 18 3 19 23 chain 5286 chr19 58617616 + 58161543 58161604 HY3 101 + 24 86 84257 41 0 1 20 chain 42092 chr19 58617616 + 58217523 58218061 MER41A 554 + 10 554 33295 259 0 1 160 0 1 37 0 5 66 1 0 15 chain 4745 chr19 58617616 + 58324228 58324284 MLT1B 390 + 334 390 86987 56 chain 14392 chr19 58617616 + 58324386 58324598 MER30 238 + 0 238 63042 108 29 52 37 0 3 38 chain 6033 chr19 58617616 + 58363497 58363572 5S 121 + 40 119 80947 42 0 4 33 chain 115086 chr19 58617616 + 58448091 58449945 THE1B-int 1605 + 0 1594 16376 11 0 6 218 0 3 93 337 22 79 10 35 75 0 10 143 1 12 218 11 8 167 7 6 417 0 2 51 0 2 16 chain 20699 chr19 58617616 + 58459522 58459919 MSTB 430 + 3 430 55499 96 38 42 13 1 14 34 5 11 77 56 63 77 chain 13222 chr19 58617616 + 58468937 58469132 MER30 238 + 1 230 64742 17 1 19 56 0 3 5 10 23 106 chain 72976 chr19 58617616 + 58507290 58508271 MER11A 1151 + 0 1120 23320 55 0 99 135 8 5 31 0 2 61 0 1 44 10 11 92 1 2 146 0 1 116 0 3 31 24 55 30 0 1 50 0 1 13 1 2 133 chain 74899 chr19 58617616 + 58584236 58585172 LTR13A 966 + 0 966 22867 76 0 4 15 0 6 111 5 19 116 5 6 267 0 4 75 0 1 266 chain 63601 chr1_KI270706v1_random 175055 + 42670 43533 L1PA7 6471 + 5369 6232 25503 228 0 6 11 7 0 52 3 4 431 0 2 7 7 5 117 chain 65899 chr1_KI270706v1_random 175055 + 109706 110473 L1PA5 6144 + 5367 6135 24979 435 0 1 332 chain 12799 chr1_KI270706v1_random 175055 + 133634 133938 L1PA15 4387 + 4064 4352 65443 40 1 0 26 1 0 55 22 19 13 4 3 33 46 43 20 18 8 5 0 3 20 chain 87411 chr1_KI270706v1_random 175055 + 154056 155377 L1PB 1623 + 112 1391 20155 5 1 0 52 4 1 18 7 4 76 2 1 103 2 0 26 2 1 69 28 7 41 13 14 149 0 1 101 31 32 176 4 5 303 14 0 94 chain 493034 chr1_KI270707v1_random 32032 + 26085 31835 L1PA3long 6157 + 4 6155 3344 217 4 0 975 0 392 242 0 7 7 7 0 482 1 0 370 0 1 84 0 5 379 13 14 83 0 1 29 0 1 986 11 8 599 9 16 147 1 0 4 0 1 250 5 6 845 chain 23837 chr1_KI270708v1_random 127682 + 10041 10325 LTR14A 344 + 0 344 51042 40 0 60 244 chain 131966 chr1_KI270708v1_random 127682 + 10420 12094 HERVK14-int 1672 + 1 1659 13827 20 9 8 12 1 0 45 1 0 219 1 0 28 2 0 235 1 0 107 0 1 111 0 1 28 4 3 163 1 0 79 3 1 9 3 0 35 1 0 202 0 1 18 0 1 88 1 0 63 1 0 31 2 0 9 1 0 140 chain 36925 chr1_KI270708v1_random 127682 + 12101 12546 MER9a2 513 + 0 511 36793 227 1 67 198 4 0 6 0 4 9 chain 148078 chr1_KI270708v1_random 127682 + 13903 15919 HERVK9-int 4720 + 69 3614 12476 55 1 0 8 1 0 11 21 20 509 22 0 74 32 23 206 7 8 513 0 924 230 52 690 274 chain 423360 chr1_KI270708v1_random 127682 + 23154 28351 L1PA7 6471 + 1130 6465 4836 128 1 41 254 3 2 686 0 4 236 14 12 4 0 1 68 1 11 62 1 2 248 0 4 652 1 5 122 0 70 73 1 2 168 12 9 293 0 1 465 0 1 314 0 1 438 0 3 110 0 4 696 3 4 135 2 0 6 chain 153139 chr1_KI270708v1_random 127682 + 90740 92611 L1PA5 6144 + 4250 6135 12170 618 0 4 299 7 13 109 0 8 395 9 9 27 8 0 49 6 6 212 0 4 132 chain 2566 chr1_KI270708v1_random 127682 + 114868 114899 Charlie1a 1436 + 263 294 103260 31 chain 498011 chr1_KI270709v1_random 66860 + 43826 49754 L1PA4 6152 + 5 5969 3202 110 4 3 462 1 0 461 0 2 70 0 21 811 0 12 786 0 1 438 0 1 380 0 1 2405 chain 150064 chr1_KI270710v1_random 40176 + 34382 36139 L1PA4 6152 + 4383 6152 12346 330 6 7 327 0 1 250 0 4 92 0 4 419 0 1 220 0 1 113 chain 201355 chr1_KI270711v1_random 42210 + 13531 16635 L1P2 5180 + 845 3231 9670 223 8 9 389 0 1 56 0 1 305 0 1 6 730 0 82 0 1 609 0 1 262 0 4 300 0 1 107 0 1 27 chain 29692 chr1_KI270712v1_random 176043 + 35585 35914 L1PA5 6144 + 5796 6125 42376 329 chain 34078 chr1_KI270712v1_random 176043 + 70787 71229 L1PA7 6471 + 6025 6467 38645 112 0 1 167 6 5 157 chain 65567 chr1_KI270712v1_random 176043 + 82252 83002 L1PA5 6144 + 5399 6142 25060 737 7 0 6 chain 16713 chr1_KI270712v1_random 176043 + 108619 108868 L1PA8 5853 + 5608 5853 60139 71 21 19 42 2 1 19 4 3 90 chain 56722 chr1_KI270712v1_random 176043 + 128155 128834 L1PA5 6144 + 5458 6144 27350 13 0 4 335 0 1 319 1 3 11 chain 161468 chr1_KI270713v1_random 40745 + 37832 39673 L1PA4 6152 + 4291 6141 11649 953 9 16 748 0 1 29 0 1 102 chain 8022 chr2 242193529 + 91506 91656 LTR12C 1709 + 859 968 74833 50 42 1 58 chain 2408 chr2 242193529 + 91656 91684 LTR12C 1709 + 690 718 83215 28 chain 495053 chr2 242193529 + 92246 99392 L1PA7 6471 + 241 6468 3290 44 1 0 118 2 0 23 1 2 133 9 26 84 38 39 291 0 1 4 1 0 624 0 1 313 6 5 101 1016 0 301 0 2 141 0 77 49 7 8 12 13 0 192 0 2 38 1 2 128 0 2 74 0 1 146 0 1 4 1 0 266 2 1 5 0 1 1187 0 2 263 5 3 601 0 4 36 0 4 18 2 0 79 0 5 615 18 19 122 4 0 7 chain 86440 chr2 242193529 + 94045 95055 LTR5A 1029 + 0 1029 20337 134 1 14 623 6 5 84 0 7 162 chain 125428 chr2 242193529 + 126239 127644 SVA_E 1901 + 7 1901 14640 146 1 0 173 3 0 192 0 156 27 2 0 37 0 40 34 0 171 156 1 129 633 chain 31959 chr2 242193529 + 150215 150675 MER4A1 472 + 0 472 40371 139 1 0 46 42 47 125 0 1 9 0 3 30 2 4 25 0 2 41 chain 34444 chr2 242193529 + 164148 164565 L1PA7 6471 + 5111 5530 38404 221 6 8 190 chain 79434 chr2 242193529 + 164565 165489 L1PA7 6471 + 5533 6461 21758 88 0 3 308 0 1 528 chain 14474 chr2 242193529 + 178573 178918 L1PB1 5432 + 5114 5430 62928 24 8 6 12 2 0 3 2 0 9 7 5 13 0 1 32 1 0 19 1 0 41 2 1 16 3 0 6 14 6 18 3 1 5 1 0 14 2 0 24 8 7 11 8 7 31 1 0 4 chain 5195 chr2 242193529 + 190428 190487 L1MB2 1706 + 969 1028 84701 59 chain 3736 chr2 242193529 + 237590 237682 L1MA4 2864 + 2724 2804 93348 12 10 1 5 1 0 15 11 9 38 chain 30677 chr2 242193529 + 257395 257786 MER57A1 433 + 22 424 41403 174 16 27 201 chain 157304 chr2 242193529 + 298694 300686 L1PA6 6164 + 4228 6161 11926 60 0 1 11 0 2 189 8 6 42 10 6 53 13 13 180 21 0 110 22 1 348 7 7 61 0 4 247 0 1 362 17 0 76 2 0 153 chain 62566 chr2 242193529 + 333923 334630 L1PA3long 6157 + 5456 6156 25738 547 7 0 153 chain 4353 chr2 242193529 + 425339 425389 MLT1A1 405 + 79 129 89157 50 chain 5031 chr2 242193529 + 482230 482290 MER53 195 + 0 60 85508 60 chain 31784 chr2 242193529 + 536386 536824 MLT2A1 477 + 0 477 40511 169 4 1 11 0 1 21 1 2 180 4 0 8 3 47 37 chain 63386 chr2 242193529 + 592213 592994 LTR17 781 + 0 781 25549 31 0 4 85 1 10 169 10 0 28 0 1 160 4 0 9 0 1 4 1 0 279 chain 29169 chr2 242193529 + 682543 682911 THE1C 375 + 7 375 43097 368 chain 30788 chr2 242193529 + 700081 700471 L1PA7 6471 + 6080 6464 41313 178 8 0 131 7 9 66 chain 56905 chr2 242193529 + 703778 704536 L1PA8 5853 + 5111 5853 27296 59 9 0 390 13 12 36 2 0 71 13 11 50 2 1 19 2 1 92 chain 49174 chr2 242193529 + 704579 705365 L1PB1 5432 + 4636 5391 29876 174 5 6 196 7 8 83 3 0 11 1 0 24 1 0 9 1 0 5 27 21 47 2 1 16 1 0 44 1 0 15 3 0 7 14 5 19 8 5 14 2 0 24 8 7 14 chain 34307 chr2 242193529 + 734152 734619 LTR2 463 + 0 463 38492 55 0 3 69 0 3 80 33 23 230 chain 20787 chr2 242193529 + 754299 754523 L1PA2 6032 + 5804 6028 55383 224 chain 548533 chr2 242193529 + 799544 805559 L1PA3long 6157 + 0 6152 836 152 0 1 624 1 129 2324 0 4 1591 0 1 576 0 3 747 chain 221145 chr2 242193529 + 837881 840663 L1PA8A 6298 + 3468 6290 9005 298 1 2 26 0 1 76 0 1 132 0 1 11 0 1 147 12 8 15 0 2 153 0 1 100 0 10 17 6 8 26 1 0 350 2 5 209 0 1 108 0 5 301 12 10 70 0 1 10 1 0 521 1 2 57 1 18 118 chain 2954 chr2 242193529 + 902707 902777 MLT2D 439 + 11 79 100334 18 24 22 28 chain 24327 chr2 242193529 + 972550 972951 MSTA 426 + 7 426 50293 33 18 19 139 41 46 56 10 18 74 0 4 30 chain 26536 chr2 242193529 + 1006028 1006324 L1PA2 6032 + 5729 6032 46920 155 0 7 141 chain 47158 chr2 242193529 + 1071146 1071660 L1PA2 6032 + 5514 6032 30590 460 0 4 54 chain 25429 chr2 242193529 + 1146907 1147212 HERVL-int 5654 + 5342 5647 48585 305 chain 120844 chr2 242193529 + 1179324 1180638 L1PA3long 6157 + 4253 5567 15368 1314 chain 32227 chr2 242193529 + 1298679 1299115 MLT2A1 477 + 0 477 40164 138 0 1 29 8 12 39 0 1 104 1 0 61 4 40 52 chain 22285 chr2 242193529 + 1441881 1442219 THE1B 368 + 0 368 53430 8 0 1 27 3 19 121 1 0 93 13 19 15 2 0 6 10 20 39 chain 16840 chr2 242193529 + 1548263 1548470 AluY 311 + 2 207 59986 63 0 1 57 6 3 81 chain 13029 chr2 242193529 + 1576739 1576962 MER30 238 + 0 238 65074 108 10 0 7 5 28 10 6 0 8 1 7 10 1 3 57 chain 36286 chr2 242193529 + 1616958 1617435 MER4A1 472 + 1 472 37222 49 12 5 166 4 5 246 chain 182064 chr2 242193529 + 1667128 1669467 L1PA8 5853 + 2809 5853 10492 76 4 5 21 2 0 19 33 0 31 0 4 19 1 5 143 0 737 492 0 1 141 0 1 193 1 0 363 0 3 24 1 0 309 1 0 166 1 0 46 2 0 71 1 0 14 2 0 6 1 2 28 13 12 19 2 1 12 1 0 80 chain 115273 chr2 242193529 + 1725308 1726589 L1PA3long 6157 + 4877 6157 16346 521 10 10 601 1 0 148 chain 502045 chr2 242193529 + 1759963 1765805 L1PA5 6144 + 0 5877 3056 131 54 80 110 0 3 195 0 8 642 9 0 740 0 1 90 0 1 192 0 2 302 0 1 323 5 0 336 2 1 36 0 2 5 2 0 824 0 1 151 0 1 104 0 1 64 0 2 945 1 0 226 0 3 303 0 1 50 chain 59003 chr2 242193529 + 1786376 1787437 MER4E1 777 + 0 769 26666 109 0 1 17 1 0 115 1 0 91 320 19 4 0 1 76 0 1 108 1 9 218 chain 21011 chr2 242193529 + 1799722 1800080 THE1D 372 + 0 357 55103 54 45 37 12 0 2 34 0 1 42 16 18 25 1 0 113 0 4 4 1 0 11 chain 4882 chr2 242193529 + 1961887 1961958 L1MA4 2864 + 2740 2809 86246 25 3 1 43 chain 17468 chr2 242193529 + 2049587 2049922 THE1B 368 + 6 345 59273 7 2 0 68 1 2 24 9 10 52 32 26 5 1 0 13 17 29 64 11 10 29 chain 38358 chr2 242193529 + 2132247 2132740 L1PA8 5853 + 5363 5853 35809 201 1 0 6 0 4 36 2 0 68 2 1 61 2 1 19 1 0 87 1 0 6 chain 20970 chr2 242193529 + 2135899 2136140 L1PA8 5853 + 5369 5609 55173 193 1 0 47 chain 190629 chr2 242193529 + 2136729 2138844 L1PA3long 6157 + 4035 6147 10083 1047 2 3 364 5 1 697 chain 10341 chr2 242193529 + 2143762 2143901 L1PA16 3655 + 3389 3529 69713 26 5 6 108 chain 274310 chr2 242193529 + 2201945 2205008 L1PA4 6152 + 2811 5887 7595 1221 0 1 151 0 1 66 0 8 30 0 1 64 0 2 1531 chain 48465 chr2 242193529 + 2219367 2219918 LTR10C 591 + 10 563 30130 500 0 2 51 chain 55288 chr2 242193529 + 2249515 2250361 L1MA2 4263 + 3252 4097 27784 103 0 2 216 0 2 8 7 3 40 0 3 34 1 0 137 13 10 73 33 38 35 21 19 59 0 1 23 7 0 17 0 3 19 chain 161559 chr2 242193529 + 2257683 2259407 L1HS 6032 + 4308 6032 11639 1724 chain 20559 chr2 242193529 + 2287016 2287265 AluSp 311 + 42 292 55696 181 0 1 68 chain 35879 chr2 242193529 + 2337926 2338325 L1PA4 6152 + 5750 6152 37483 386 0 3 13 chain 8728 chr2 242193529 + 2351539 2351640 L1PA7 6471 + 6367 6468 73151 101 chain 201874 chr2 242193529 + 2676663 2679228 HERVL-int 5654 + 3104 5654 9644 99 0 1 19 21 4 36 2 0 243 0 4 47 1 0 16 1 0 65 0 1 285 0 1 41 0 2 13 27 28 361 0 12 242 3 4 417 6 7 173 6 5 93 29 11 95 1 2 223 chain 28294 chr2 242193529 + 2679229 2679681 MLT2A1 477 + 1 477 44427 139 0 1 28 1 5 31 8 7 145 49 70 31 2 1 18 chain 50946 chr2 242193529 + 2784534 2785110 L1PA5 6144 + 5567 6144 29228 435 0 1 141 chain 20881 chr2 242193529 + 2801070 2801403 THE1B 368 + 0 342 55277 35 5 10 21 5 7 99 1 0 19 18 23 28 1 0 64 7 6 30 chain 7208 chr2 242193529 + 2956885 2956986 L1MB7 1623 + 1033 1133 76919 16 4 3 81 chain 18651 chr2 242193529 + 2987064 2987497 L1PB1 5432 + 5041 5423 57944 38 0 4 15 40 16 15 6 5 12 1 0 6 11 7 10 3 1 49 1 0 18 1 0 44 1 0 15 54 40 11 2 0 23 1 0 22 1 0 12 1 0 13 1 0 6 chain 234910 chr2 242193529 + 3030549 3033219 L1P1 4361 + 1 2676 8604 205 4 0 1223 0 9 1238 chain 394576 chr2 242193529 + 3083857 3088252 L1PA4 6152 + 1487 5879 5240 8 7 0 1687 0 1 103 1 0 494 0 4 2095 chain 20942 chr2 242193529 + 3129519 3129792 L1PA8 5853 + 5585 5852 55206 22 2 0 71 2 1 9 1 0 52 2 1 19 1 0 92 chain 3473 chr2 242193529 + 3135815 3135856 L1MB7 1623 + 1385 1426 95436 41 chain 111189 chr2 242193529 + 3150657 3152280 L1PBa1 4058 + 10 1618 16918 29 50 49 55 0 3 111 1 0 82 2 1 44 60 56 82 15 16 23 36 30 502 10 9 206 4 0 148 2 1 161 chain 92840 chr2 242193529 + 3152280 3153691 L1PB1 5432 + 4074 5420 19182 37 1 2 57 1 0 281 1 0 175 2 0 79 0 2 108 4 0 175 1 4 43 9 10 6 1 0 30 70 31 24 1 0 5 16 15 11 2 0 51 5 6 11 1 0 43 1 0 16 4 1 16 34 23 10 2 0 13 1 0 5 1 2 4 1 0 21 1 0 13 1 0 16 chain 26924 chr2 242193529 + 3347273 3347617 THE1B 368 + 0 368 46372 44 0 15 115 1 0 24 0 2 106 9 17 45 chain 5516 chr2 242193529 + 3352602 3352669 MER44D 709 + 337 404 83172 67 chain 4768 chr2 242193529 + 3357007 3357072 MER51A 677 + 199 342 86872 37 0 78 28 chain 34977 chr2 242193529 + 3357385 3357814 MER57A1 433 + 0 433 38029 133 0 3 149 1 2 146 chain 556855 chr2 242193529 + 3369246 3375386 L1PA3long 6157 + 0 6153 305 742 2 1 230 0 1 1042 0 1 94 0 3 25 0 3 920 0 1 203 0 2 889 0 3 1993 chain 21985 chr2 242193529 + 3407560 3407822 AluY 311 + 40 309 53855 92 0 1 65 3 9 102 chain 75685 chr2 242193529 + 3514824 3515899 MER11A 1151 + 0 1151 22662 78 1 9 21 0 2 28 0 93 63 4 0 76 0 3 67 7 8 90 0 1 140 0 1 143 1 27 12 43 0 22 18 0 36 0 1 60 6 7 119 1 5 39 chain 11208 chr2 242193529 + 3588651 3588851 MER30 238 + 0 231 68235 23 34 35 57 13 43 73 chain 4301 chr2 242193529 + 3662771 3662821 MER58B 340 + 146 196 89497 50 chain 22779 chr2 242193529 + 3721588 3722003 THE1B 368 + 0 368 52704 40 89 29 10 0 15 53 0 1 24 4 1 25 0 2 39 2 1 53 1 0 75 chain 43469 chr2 242193529 + 3760298 3760844 L1PA8 5853 + 5313 5853 32470 114 0 1 136 1 0 46 2 0 68 2 1 8 2 1 52 2 1 19 1 0 93 chain 19063 chr2 242193529 + 3847697 3848056 MSTA 426 + 28 426 57478 28 1 0 47 21 45 58 4 0 10 2 0 5 43 45 27 4 24 109 chain 33403 chr2 242193529 + 3947523 3947960 L1PA8 5853 + 5414 5853 39173 150 1 0 46 3 1 68 1 0 10 1 0 51 2 1 10 1 9 93 chain 21411 chr2 242193529 + 3967332 3967604 AluY 311 + 36 309 54623 96 13 11 7 0 3 156 chain 21494 chr2 242193529 + 3968384 3968751 THE1D 372 + 0 372 54517 21 0 2 51 4 5 60 5 6 21 61 62 144 chain 8328 chr2 242193529 + 3987152 3987280 MER44A 345 + 133 269 74088 21 0 9 71 4 0 7 3 6 22 chain 23839 chr2 242193529 + 3996779 3997066 AluSg7 307 + 8 294 51040 123 0 1 148 2 0 14 chain 16847 chr2 242193529 + 3998769 3999122 THE1D 372 + 0 372 59981 55 33 24 14 0 20 15 0 4 30 70 76 17 1 0 85 1 0 32 chain 442450 chr2 242193529 + 4057205 4062808 HERVL-int 5654 + 0 5654 4532 52 7 6 340 0 3 57 4 0 6 0 4 152 0 1 166 0 1 507 4 5 21 0 1 169 5 16 64 0 15 207 70 57 131 3 4 31 1 13 19 0 5 72 18 19 683 0 12 377 1 0 32 0 1 784 4 8 72 0 1 86 18 17 12 4 3 139 6 7 181 2 0 666 7 6 423 chain 3311 chr2 242193529 + 4070094 4070136 THE1C 375 + 134 175 96915 30 1 0 11 chain 10778 chr2 242193529 + 4114886 4115146 AluSp 311 + 0 286 68902 17 0 134 18 115 7 110 chain 546786 chr2 242193529 + 4157810 4163833 L1PA3long 6157 + 0 6150 923 153 1 2 626 0 128 235 2 0 302 1 0 558 0 1 4145 chain 19087 chr2 242193529 + 4176880 4177134 HERVL-int 5654 + 5408 5654 57457 25 2 0 7 6 0 214 chain 2947 chr2 242193529 + 4202202 4202233 U2 167 + 0 31 100408 31 chain 11338 chr2 242193529 + 4233867 4234002 L1P1 4361 + 2213 2347 68022 101 1 0 33 chain 48392 chr2 242193529 + 4238719 4239256 L1PA5 6144 + 5602 6139 30154 537 chain 50407 chr2 242193529 + 4289771 4290402 L1PA8 5853 + 5221 5850 29411 158 0 2 142 0 3 38 1 0 44 2 0 70 2 1 9 1 0 52 2 1 19 1 0 90 chain 14886 chr2 242193529 + 4305777 4306085 L1PB1 5432 + 5105 5382 62402 9 3 0 21 1 0 11 1 0 10 6 3 9 2 0 51 7 6 11 1 0 45 6 5 10 2 0 6 16 6 18 3 1 5 1 0 14 2 0 24 1 0 12 chain 29865 chr2 242193529 + 4482333 4482702 THE1B-int 1605 + 4 374 42169 30 0 2 13 1 0 325 chain 5224 chr2 242193529 + 4490647 4490707 THE1B-int 1605 + 1540 1600 84571 60 chain 67257 chr2 242193529 + 4563205 4564318 L1PB1 5432 + 4373 5414 24635 62 0 1 63 4 5 123 0 3 212 0 1 8 0 3 200 15 15 25 1 5 4 1 0 11 53 0 24 1 0 4 3 2 12 2 0 3 2 0 9 2 0 52 2 1 10 6 5 39 6 5 16 2 0 6 17 7 18 37 32 11 1 0 21 1 0 13 1 0 10 chain 3384 chr2 242193529 + 4575219 4575268 L1PA7 6471 + 6425 6468 96237 37 6 0 6 chain 44579 chr2 242193529 + 4621075 4621564 L1PA4 6152 + 5662 6151 31793 489 chain 69583 chr2 242193529 + 4637252 4638226 L1PA8 5853 + 4878 5853 24099 128 1 0 3 2 0 28 0 1 46 0 2 37 0 1 435 8 14 33 4 2 71 1 0 8 2 1 54 1 0 14 6 5 71 0 1 4 4 3 13 chain 547294 chr2 242193529 + 4642968 4648965 L1PA2 6032 + 0 6031 905 1273 9 0 10 0 9 1280 0 5 8 5 0 553 0 3 415 0 2 383 0 1 494 0 28 1567 chain 3621 chr2 242193529 + 4691873 4691915 MSTC 436 + 388 430 94264 42 chain 10565 chr2 242193529 + 4691938 4692077 MLT2A2 560 + 51 191 69294 24 1 2 114 chain 36939 chr2 242193529 + 4708671 4709105 L1PA5 6144 + 5709 6144 36783 34 0 1 400 chain 32309 chr2 242193529 + 4716704 4717148 MLT2A1 477 + 0 477 40108 170 4 1 8 0 1 24 0 1 180 4 0 9 6 44 39 chain 568332 chr2 242193529 + 4733729 4739760 L1HS 6032 + 0 6032 8 74 0 1 5957 chain 31001 chr2 242193529 + 4761313 4761702 L1PA7 6471 + 6060 6447 41123 184 1 0 63 18 17 123 chain 22138 chr2 242193529 + 4764552 4764866 L1PA8 5853 + 5544 5853 53643 20 1 0 115 11 9 52 2 1 19 2 1 92 chain 111478 chr2 242193529 + 4794857 4796085 L1PA3long 6157 + 4922 6152 16881 1040 0 2 188 chain 3568 chr2 242193529 + 4836577 4836653 Charlie1a 1436 + 848 937 94673 31 21 34 24 chain 3266 chr2 242193529 + 4884793 4884879 LTR12C 1709 + 654 697 97327 23 43 0 20 chain 24156 chr2 242193529 + 4932992 4933327 THE1A 353 + 15 353 50565 47 1 5 35 19 18 233 chain 30657 chr2 242193529 + 4948443 4948837 MLT2A1 477 + 0 389 41415 167 8 5 202 2 0 15 chain 39754 chr2 242193529 + 5000768 5001216 LTR7 482 + 0 482 34853 247 0 31 27 0 3 174 chain 296136 chr2 242193529 + 5001218 5005021 HERVH-int 3825 + 0 3825 6947 212 0 11 312 10 5 29 3 2 9 1 0 9 4 0 14 7 1 14 1 0 13 112 0 19 63 0 9 1 0 14 41 0 18 1 21 17 2 1 49 1 0 447 15 0 197 6 7 255 4 31 217 10 12 1147 0 3 25 1 211 494 chain 39504 chr2 242193529 + 5006280 5006730 LTR7 482 + 0 482 35007 225 0 1 20 1 32 204 chain 2717 chr2 242193529 + 5099178 5099256 MADE1 96 + 0 96 102199 21 31 49 26 chain 41014 chr2 242193529 + 5142682 5143132 L1PA3long 6157 + 5702 6152 33960 450 chain 90661 chr2 242193529 + 5166187 5167429 L1PA8 5853 + 4629 5852 19560 390 1 0 4 0 1 8 10 0 49 0 2 262 24 17 121 1 3 36 1 0 42 1 0 44 2 0 67 3 4 14 1 0 47 2 1 15 7 6 90 chain 38867 chr2 242193529 + 5182346 5182848 THE1C-int 1605 + 0 515 35456 13 5 6 188 1 0 122 0 6 110 0 7 63 chain 277492 chr2 242193529 + 5196905 5199911 L1PA2 6032 + 3027 6032 7504 36 1 0 2969 chain 342930 chr2 242193529 + 5258575 5262778 L1PA7 6471 + 2253 6465 6011 328 0 2 58 13 2 65 0 3 375 1 2 317 0 1 85 9 7 25 1 2 86 14 15 203 3 0 171 0 1 370 1 3 561 0 1 371 0 5 115 0 5 189 1 0 176 0 1 338 0 1 67 0 5 100 1 0 150 3 0 6 chain 48183 chr2 242193529 + 5280098 5280620 L1PA2 6032 + 5497 6019 30226 522 chain 16934 chr2 242193529 + 5292551 5292887 THE1B 368 + 0 360 59872 40 0 15 117 111 120 68 chain 6410 chr2 242193529 + 5394599 5394670 L1PA7 6471 + 6234 6305 79635 71 chain 8717 chr2 242193529 + 5394709 5394811 L1PA7 6471 + 6365 6467 73171 102 chain 8781 chr2 242193529 + 5498888 5498994 MLT2B1 522 + 0 106 73036 106 chain 16905 chr2 242193529 + 5623516 5623854 L1PB1 5432 + 5114 5422 59908 24 1 0 4 3 2 14 5 1 9 2 0 52 2 1 15 1 0 45 1 0 15 2 0 6 45 33 11 2 0 24 1 0 22 1 0 12 1 0 18 chain 43888 chr2 242193529 + 5644254 5644799 MLT2A2 560 + 14 560 32199 192 0 1 353 chain 19728 chr2 242193529 + 5654892 5655281 THE1D 372 + 0 372 56754 56 63 46 64 40 42 16 1 0 100 4 3 45 chain 117891 chr2 242193529 + 5732709 5734136 L1PA7 6471 + 5045 6466 15900 576 1 0 77 1 3 68 26 18 350 1 0 184 1 0 21 0 3 121 chain 18321 chr2 242193529 + 5899386 5899592 L1PA3long 6157 + 5952 6157 58336 37 1 0 168 chain 23775 chr2 242193529 + 5904921 5905210 AluSc 308 + 18 307 51154 289 chain 27071 chr2 242193529 + 5961707 5962063 THE1B 368 + 0 356 46166 12 3 1 23 0 6 132 1 0 117 3 0 65 chain 5462 chr2 242193529 + 6118437 6118518 L1M3c 1411 + 625 703 83391 59 3 0 19 chain 47616 chr2 242193529 + 6122109 6122644 L1PA5 6144 + 5597 6132 30430 535 chain 6011 chr2 242193529 + 6131880 6131975 L1MA8 2339 + 2119 2205 81034 45 3 0 32 6 0 9 chain 77843 chr2 242193529 + 6134644 6135897 L1PB1 5432 + 4219 5424 22134 309 3 5 95 4 1 417 0 1 6 1 0 47 38 14 21 1 0 12 16 11 11 2 0 50 1 0 18 1 0 10 6 11 23 1 0 20 66 49 12 15 14 16 0 3 9 1 0 16 1 0 4 chain 3758 chr2 242193529 + 6141348 6141400 MLT2A2 560 + 506 558 93152 22 0 1 12 1 0 17 chain 3343 chr2 242193529 + 6141468 6141508 MLT2A2 560 + 521 560 96669 20 1 0 19 chain 122288 chr2 242193529 + 6161572 6163022 L1PA6 6164 + 4694 6162 15146 13 2 1 453 0 2 382 0 1 423 0 12 10 1 2 4 1 0 48 0 4 113 chain 22119 chr2 242193529 + 6210048 6210393 THE1D 372 + 4 335 53673 47 8 7 18 15 0 7 3 0 98 8 12 127 0 1 14 chain 28727 chr2 242193529 + 6276820 6277199 L1PA8A 6298 + 5916 6291 43750 90 1 0 180 11 8 97 chain 9785 chr2 242193529 + 6340294 6340430 MER30 238 + 89 238 70856 18 4 17 114 chain 159179 chr2 242193529 + 6377093 6379371 L1PB1 5432 + 3144 5423 11797 176 1 2 41 6 7 356 11 13 101 0 1 14 13 27 74 1 0 36 1 0 23 3 12 481 0 4 117 10 5 73 0 1 395 1 2 8 2 1 16 8 7 10 1 0 11 5 1 9 2 0 10 1 9 33 2 1 16 1 0 44 1 0 15 14 1 30 7 4 15 2 0 24 1 0 20 2 1 13 1 0 15 1 0 4 chain 5474 chr2 242193529 + 6455643 6455716 L1M4 1397 + 854 927 83331 73 chain 101478 chr2 242193529 + 6537367 6538646 L1P3 4156 + 0 1264 18131 251 2 1 52 5 0 18 1 0 292 16 9 143 5 1 186 0 1 121 0 2 187 chain 15543 chr2 242193529 + 6689616 6689966 L1PB1 5432 + 5107 5422 61597 7 5 0 6 0 3 11 1 0 10 1 0 12 2 0 3 2 0 9 2 0 53 5 1 14 1 0 45 1 0 15 67 50 24 2 1 20 1 0 31 chain 4643 chr2 242193529 + 6855091 6855171 MADE1 96 - 0 96 87571 32 10 26 38 chain 19665 chr2 242193529 + 6858459 6858789 THE1B 368 + 0 356 56839 40 0 15 117 1 0 26 68 80 78 chain 114702 chr2 242193529 + 6858801 6860364 THE1B-int 1605 + 0 1604 16431 12 4 6 119 0 1 204 0 1 73 10 35 207 19 18 17 1 6 54 20 22 367 3 7 95 8 15 6 7 0 225 0 1 37 5 6 70 chain 23162 chr2 242193529 + 6860367 6860709 THE1B 368 + 2 368 52127 42 0 15 109 1 0 30 8 6 10 17 29 125 chain 11877 chr2 242193529 + 6908268 6908543 L1PB1 5432 + 5167 5420 67057 50 21 19 41 45 31 19 2 0 5 1 0 14 2 0 12 11 12 21 1 0 13 1 0 16 chain 28119 chr2 242193529 + 6918494 6918790 AluYd8 298 + 0 296 44685 296 chain 71349 chr2 242193529 + 6964183 6964978 L1PA3long 6157 + 5360 6157 23683 647 1 3 147 chain 27449 chr2 242193529 + 6970146 6970516 THE1B 368 + 0 368 45643 15 2 0 22 0 5 130 3 2 19 4 0 175 chain 3011 chr2 242193529 + 7071764 7071803 MLT2C1 407 + 66 105 99739 39 chain 22592 chr2 242193529 + 7138176 7138455 L1PA6 6164 + 5887 6162 52998 269 4 0 6 chain 93523 chr2 242193529 + 7141526 7142645 L1PA7 6471 + 5236 6357 19108 169 0 1 214 2 1 80 6 2 293 0 7 159 4 3 192 chain 173835 chr2 242193529 + 7176145 7178068 L1PA3long 6157 + 4234 6157 10903 407 1 0 240 0 4 422 1 0 219 0 1 625 3 0 5 chain 28451 chr2 242193529 + 7330040 7330393 THE1A 353 + 2 353 44190 108 1 0 64 0 1 27 1 0 94 1 0 57 chain 3544 chr2 242193529 + 7365008 7365047 MADE1 96 - 2 41 94915 39 chain 4003 chr2 242193529 + 7442298 7442344 THE1B 368 + 322 368 91438 46 chain 3884 chr2 242193529 + 7542666 7542708 LTR40b 463 + 162 204 92261 42 chain 28077 chr2 242193529 + 7719535 7719920 MER51B 395 + 0 395 44755 139 23 34 72 1 0 150 chain 14277 chr2 242193529 + 7818028 7818363 L1PB1 5432 + 5116 5416 63225 18 1 0 13 1 0 11 5 1 10 2 0 6 0 1 17 14 9 18 2 1 16 1 0 39 5 4 16 29 16 15 2 0 5 1 0 14 2 0 24 1 0 14 0 1 6 1 0 13 1 0 12 chain 14177 chr2 242193529 + 7866315 7866533 MER30 238 + 0 238 63350 17 23 23 67 4 24 107 chain 13293 chr2 242193529 + 7937796 7938087 MLT2A1 477 + 214 477 64636 8 0 8 121 0 8 16 107 63 39 chain 22720 chr2 242193529 + 7972345 7972708 THE1D 372 + 0 372 52802 104 1 0 46 64 74 148 chain 22228 chr2 242193529 + 8022965 8023301 THE1B 368 + 0 361 53509 39 1 16 117 1 0 26 35 45 105 0 1 12 chain 46748 chr2 242193529 + 8041223 8041724 L1PA2 6032 + 5097 5598 30751 501 chain 40167 chr2 242193529 + 8047346 8047892 MLT2A2 560 + 0 557 34544 128 6 2 213 4 6 46 7 18 59 0 2 83 chain 416271 chr2 242193529 + 8127341 8131951 L1PA3long 6157 + 1531 6157 4936 245 0 1 231 1 2 806 0 7 348 0 1 791 0 2 1397 0 3 461 0 1 330 chain 365524 chr2 242193529 + 8180334 8184398 L1PA4 6152 + 1775 5836 5728 538 1 0 140 2 0 959 0 1 1959 1 0 464 chain 60682 chr2 242193529 + 8254073 8254822 MER4E1 777 + 0 770 26182 386 0 1 60 0 11 84 1 9 93 6 7 119 chain 6765 chr2 242193529 + 8423747 8423826 MER96B 391 + 95 174 78431 79 chain 28150 chr2 242193529 + 8476680 8476976 AluYb8 318 + 20 316 44636 296 chain 43251 chr2 242193529 + 8503750 8504294 MLT2A2 560 + 0 560 32611 139 0 4 262 0 12 143 chain 2984 chr2 242193529 + 8563635 8563667 L1MA10 1535 + 1471 1503 100020 32 chain 9527 chr2 242193529 + 8674935 8675266 MER1B 344 + 45 344 71418 11 10 11 14 7 11 39 69 70 57 22 0 9 58 42 35 chain 13908 chr2 242193529 + 8705041 8705230 MER30B 195 + 6 194 63725 88 5 3 78 1 2 17 chain 19500 chr2 242193529 + 8763793 8764134 L1PB3 3668 + 3244 3562 57025 46 17 15 50 1 0 5 0 1 30 1 0 90 17 1 19 15 13 14 3 1 33 chain 29182 chr2 242193529 + 8905460 8905812 L1PA6 6164 + 5811 6162 43078 30 1 0 321 chain 152587 chr2 242193529 + 8911964 8914245 L1PB1 5432 + 3187 5362 12195 33 0 1 33 1 0 208 193 95 37 4 0 24 1 0 110 1 4 156 0 1 349 0 7 195 0 1 99 0 6 19 2 0 43 12 13 183 16 23 156 2 1 119 1 2 9 3 0 20 1 0 13 17 12 10 3 1 50 15 17 44 1 0 20 19 7 19 8 5 14 2 0 16 chain 46822 chr2 242193529 + 8929770 8931043 LTR30 714 + 0 703 30720 84 0 5 135 1 10 15 0 5 52 0 1 136 7 18 77 598 0 86 3 0 5 33 34 28 1 0 12 chain 17355 chr2 242193529 + 8930673 8930863 L1PA4 6152 + 5950 6140 59408 190 chain 6200 chr2 242193529 + 8941440 8941517 MER3 215 + 33 113 80355 28 0 3 49 chain 493424 chr2 242193529 + 8967928 8973523 L1PA5 6144 + 3 6138 3332 86 0 525 1018 0 8 552 1 3 351 0 1 95 1 0 528 2 0 33 1 2 310 4 10 2159 13 13 441 chain 6982 chr2 242193529 + 9023337 9023526 L1PB1 5432 + 5236 5422 77663 28 67 69 13 2 0 23 2 1 22 1 0 12 1 0 18 chain 549494 chr2 242193529 + 9038331 9044480 L1PA4 6152 + 3 6152 783 159 5 6 408 1 0 464 1 0 4763 1 2 347 chain 24458 chr2 242193529 + 9114748 9115100 THE1B 368 + 2 368 50096 42 1 16 25 0 4 83 5 4 16 2 0 28 2 1 73 1 0 74 chain 6298 chr2 242193529 + 9124983 9125070 MLT1C 463 + 2 86 80004 18 3 0 66 chain 24818 chr2 242193529 + 9182995 9183333 THE1B 368 + 0 368 49559 104 0 17 48 1 0 43 1 5 15 3 11 41 0 2 82 chain 29286 chr2 242193529 + 9202180 9202493 AluYb8 318 + 0 314 42915 152 0 1 161 chain 4375 chr2 242193529 + 9253871 9253925 MER44A 345 + 92 154 89029 9 0 8 45 chain 7349 chr2 242193529 + 9285033 9285124 MLT1A 405 + 60 151 76523 91 chain 39333 chr2 242193529 + 9383700 9384173 L1PA5 6144 + 5673 6144 35126 43 3 1 427 chain 33976 chr2 242193529 + 9514111 9514506 L1PA5 6144 + 5737 6126 38725 152 1 2 110 8 1 124 chain 3815 chr2 242193529 + 9610307 9610383 MIR 256 + 112 190 92740 22 21 23 33 chain 40816 chr2 242193529 + 9621710 9622193 L1PA7 6471 + 5983 6470 34084 148 0 1 208 0 1 115 0 2 12 chain 3136 chr2 242193529 + 9638086 9638123 MIR 256 + 104 141 98492 37 chain 53205 chr2 242193529 + 9650986 9651599 L1PA5 6144 + 5245 5862 28499 21 1 6 22 1 0 568 chain 12750 chr2 242193529 + 9726054 9726192 L1PA2 6032 + 5878 6016 65525 138 chain 4870 chr2 242193529 + 9750327 9750388 MIR 256 + 84 145 86321 61 chain 102122 chr2 242193529 + 9833495 9835228 L1MA2 4263 + 2620 4051 18050 24 3 1 24 2 4 232 6 7 37 0 1 234 5 39 351 2 0 10 2 0 4 2 0 70 6 5 37 340 14 82 22 19 141 11 9 86 chain 532090 chr2 242193529 + 9860962 9866917 L1PA4 6152 + 1 5972 1747 432 0 1 646 0 3 141 1 0 20 1 0 204 0 1 651 2 0 1224 0 9 1305 0 5 671 5 6 652 chain 16035 chr2 242193529 + 10086239 10086571 MSTA 426 + 0 386 60984 54 2 0 50 4 25 10 6 9 39 0 1 6 71 82 15 6 26 69 chain 18522 chr2 242193529 + 10091888 10092253 LTR12C 1709 + 773 1180 58080 64 1 0 39 0 78 99 78 0 33 30 73 21 chain 3207 chr2 242193529 + 10092319 10092354 LTR12C 1709 + 683 718 97831 35 chain 6499 chr2 242193529 + 10213669 10213745 LTR5_Hs 974 + 0 78 79355 19 0 2 57 chain 40075 chr2 242193529 + 10222717 10223268 MER41A 554 + 0 554 34605 42 5 1 118 0 4 154 10 7 70 1 2 28 0 1 17 5 4 20 0 5 81 chain 40566 chr2 242193529 + 10263592 10264071 L1PA5 6144 + 5666 6141 34248 335 8 1 124 1 4 11 chain 22611 chr2 242193529 + 10275789 10276077 AluSc 308 + 18 308 52969 90 6 7 89 0 1 103 chain 20857 chr2 242193529 + 10320252 10320603 MSTA 426 + 1 405 55299 97 14 39 69 2 0 5 46 56 29 1 21 88 chain 6135 chr2 242193529 + 10579713 10579783 MER41A 554 + 396 466 80587 70 chain 23478 chr2 242193529 + 10669610 10669891 AluSc 308 + 0 280 51621 8 1 0 272 chain 90771 chr2 242193529 + 10805022 10806003 L1PA2 6032 + 4980 5962 19541 37 0 1 944 chain 4899 chr2 242193529 + 10809171 10809261 MER33 330 + 224 322 86155 22 5 4 38 7 16 18 chain 32859 chr2 242193529 + 10824855 10825356 MLT2A1 477 + 0 476 39621 167 6 3 25 3 1 175 75 55 50 chain 34025 chr2 242193529 + 10850113 10851399 MER4A 717 + 0 711 38689 13 12 12 4 0 1 16 4 5 209 1 13 40 0 1 52 0 40 47 756 131 18 7 1 39 8 9 60 chain 22850 chr2 242193529 + 10896833 10897160 THE1B 368 + 0 342 52582 44 0 15 48 4 5 60 1 0 27 15 13 22 0 2 106 chain 3850 chr2 242193529 + 10964665 10964734 LTR16C 481 + 394 465 92503 25 15 17 29 chain 24622 chr2 242193529 + 10989608 10989964 THE1D 372 + 1 360 49833 40 0 1 145 35 38 115 1 0 20 chain 11209 chr2 242193529 + 11008709 11008835 L1PA5 6144 + 6009 6135 68233 126 chain 8954 chr2 242193529 + 11070988 11071107 LTR17 781 + 182 292 72663 42 9 0 68 chain 2493 chr2 242193529 + 11115555 11115590 L1MB1 2102 + 1972 2007 103681 23 0 1 4 1 0 7 chain 51382 chr2 242193529 + 11251505 11252128 L1PA7 6471 + 5301 5927 29083 141 0 1 178 1 0 77 0 2 139 12 13 75 chain 25926 chr2 242193529 + 11262428 11262785 THE1B 368 + 0 368 47825 44 0 6 6 0 9 74 6 3 24 9 6 26 0 2 168 chain 11201 chr2 242193529 + 11282415 11282919 L1MC1 2226 + 833 1394 68244 32 14 14 101 320 377 37 chain 28854 chr2 242193529 + 11283278 11283585 AluYb8 318 + 0 306 43553 132 1 0 174 chain 10500 chr2 242193529 + 11309201 11309338 MER2 342 + 158 295 69420 137 chain 40179 chr2 242193529 + 11328633 11329073 L1PA3long 6157 + 5713 6153 34533 440 chain 27484 chr2 242193529 + 11399008 11399421 MSTA-int 1630 + 1215 1625 45600 74 0 1 26 10 11 21 14 16 84 0 1 38 5 1 27 1 0 42 8 4 59 0 1 4 chain 32781 chr2 242193529 + 11426226 11426640 MER48 407 + 0 407 39686 87 8 1 319 chain 10161 chr2 242193529 + 11522234 11522374 MER85 139 + 0 139 70083 96 10 9 34 chain 5795 chr2 242193529 + 11551706 11551772 tRNA-Glu-GAG_ 72 + 6 72 81951 66 chain 4881 chr2 242193529 + 11561197 11561250 U2 167 + 0 53 86249 53 chain 16693 chr2 242193529 + 11584779 11584972 7SLRNA 320 + 7 200 60161 193 chain 10998 chr2 242193529 + 11624738 11624889 MER30 238 + 30 196 68559 78 4 19 69 chain 16580 chr2 242193529 + 11681255 11681605 MSTA 426 + 0 405 60284 21 1 0 76 20 64 12 2 0 30 72 66 27 2 22 87 chain 4032 chr2 242193529 + 11685505 11685551 MER57F 435 + 389 435 91229 46 chain 17904 chr2 242193529 + 11729089 11729313 L1PA8 5853 + 5632 5853 58752 47 1 0 61 2 1 19 1 0 93 chain 114623 chr2 242193529 + 11737081 11738395 L1PA7 6471 + 5156 6470 16453 67 0 1 397 2 0 517 0 1 331 chain 6258 chr2 242193529 + 11846272 11846338 L1PA5 6144 + 4110 4176 80133 66 chain 22241 chr2 242193529 + 11894325 11894686 THE1B 368 + 0 368 53492 108 7 9 59 0 2 6 30 25 4 0 1 10 11 19 63 7 6 56 chain 44464 chr2 242193529 + 11900515 11901063 MER41A 554 + 0 554 31849 93 0 1 222 6 5 109 0 1 38 0 5 80 chain 91416 chr2 242193529 + 11959618 11960823 L1PA11 4918 + 3298 4504 19434 222 0 3 172 0 3 203 3 7 82 1 0 323 13 12 25 2 0 43 2 1 53 1 0 28 2 0 13 2 1 15 chain 43372 chr2 242193529 + 12083868 12084495 MER41B 635 + 0 635 32528 123 3 4 293 1 0 5 4 5 21 17 16 44 3 5 33 7 13 5 1 0 26 0 1 41 chain 23300 chr2 242193529 + 12248624 12248906 AluSp 311 + 0 281 51928 40 1 0 241 chain 51711 chr2 242193529 + 12292461 12293083 L1PA7 6471 + 5844 6470 28961 86 1 0 31 0 1 39 0 2 134 0 1 175 0 1 156 chain 29772 chr2 242193529 + 12360499 12360810 AluYb8 318 + 2 313 42276 311 chain 6594 chr2 242193529 + 12419547 12419628 MER58B 340 + 141 222 78995 81 chain 35109 chr2 242193529 + 12447704 12448271 L1PB1 5432 + 4738 5301 37948 149 1 0 6 0 1 4 3 4 4 1 0 55 0 4 30 3 2 83 0 3 20 8 9 5 3 0 17 1 0 13 2 1 10 5 1 10 3 1 50 2 1 16 1 0 23 3 0 13 0 7 16 2 0 5 chain 35831 chr2 242193529 + 12492548 12492933 L1PA2 6032 + 5647 6032 37508 385 chain 28090 chr2 242193529 + 12569679 12570109 LTR7Y 441 + 0 441 44733 103 9 0 57 68 84 74 0 2 23 0 2 96 chain 294815 chr2 242193529 + 12570109 12573791 HERVH-int 3825 + 0 3825 6990 532 69 0 38 1 0 9 2 1 7 0 1 2 66 0 13 7 1 15 1 0 12 3 41 26 2 1 24 8 7 49 1 0 662 0 1 107 0 1 135 4 31 449 1 0 53 0 1 25 0 1 41 0 2 72 0 3 290 1 0 439 0 3 25 8 218 247 11 15 225 chain 2816 chr2 242193529 + 12570666 12570706 HERVH-int 3825 + 552 590 101554 18 1 0 10 1 0 10 chain 5855 chr2 242193529 + 12570769 12570833 HERVH-int 3825 + 471 535 72639 64 chain 28187 chr2 242193529 + 12575006 12575439 LTR7Y 441 + 0 441 44582 103 9 0 57 68 84 79 0 1 105 0 2 5 2 0 5 chain 11468 chr2 242193529 + 12599257 12599397 MLT1B 390 + 230 370 67801 140 chain 38960 chr2 242193529 + 12626334 12626776 LTR7 482 + 0 473 35384 247 1 32 194 chain 296946 chr2 242193529 + 12626787 12630540 HERVH-int 3825 + 0 3825 6926 33 5 21 438 61 0 40 5 0 38 1 0 10 1 0 7 5 0 16 68 1 15 1 0 12 3 0 7 23 0 19 22 0 11 0 21 28 22 1 11 2 1 23 5 5 21 1 0 36 0 1 625 0 1 243 4 31 284 0 4 1116 8 218 116 0 1 256 0 3 111 chain 38663 chr2 242193529 + 12631799 12632257 LTR7 482 + 0 482 35596 181 7 0 66 4 35 200 chain 93374 chr2 242193529 + 12792747 12793848 L1PA7 6471 + 5354 6466 19133 267 1 0 440 2 0 35 0 1 184 0 13 172 chain 3848 chr2 242193529 + 12849479 12849520 MSTD 398 + 337 378 92512 41 chain 41585 chr2 242193529 + 12927365 12927808 L1HS 6032 + 5586 6029 33634 443 chain 4438 chr2 242193529 + 12968509 12968584 MADE1 96 + 0 91 88673 23 16 32 36 chain 15303 chr2 242193529 + 13218828 13219038 MLT2A1 477 + 0 209 61912 167 15 13 24 0 1 4 chain 30236 chr2 242193529 + 13321471 13321894 MER4E1 777 + 0 423 41817 9 1 2 13 4 0 62 4 5 106 0 3 141 3 2 80 chain 53395 chr2 242193529 + 13363940 13364667 L1PA8 5853 + 5138 5853 28431 67 9 5 84 0 1 269 1 0 10 9 6 25 5 3 70 14 13 49 2 1 19 1 0 93 chain 70125 chr2 242193529 + 13441336 13442107 L1PA5 6144 + 3641 4413 23968 496 0 1 275 chain 51301 chr2 242193529 + 13567499 13568056 L1PA2 6032 + 5472 6029 29130 557 chain 42995 chr2 242193529 + 13610514 13611019 L1PA6 6164 + 5660 6162 32775 496 3 0 6 chain 152318 chr2 242193529 + 13634790 13636465 L1PA4 6152 + 3618 5294 12209 401 0 1 1274 chain 20288 chr2 242193529 + 13680354 13680592 HERVIP10FH-int 2884 + 159 399 56029 29 0 1 19 0 1 190 chain 13797 chr2 242193529 + 13686825 13687010 HUERS-P3b-int 2065 + 19 202 63889 75 3 0 81 0 1 26 chain 23896 chr2 242193529 + 13699944 13700334 THE1D 372 + 0 372 50951 75 19 0 91 40 42 29 10 9 126 chain 114618 chr2 242193529 + 13719677 13720991 L1P1 4361 + 2926 4249 16455 239 1 0 13 0 1 347 3 13 612 1 0 98 chain 317162 chr2 242193529 + 13744880 13748983 L1P3 4156 + 5 4137 6467 227 30 29 60 1 0 89 1 0 196 0 1 384 19 36 348 1 2 239 8 7 123 1 0 88 0 1 253 5 9 511 28 22 325 0 1 77 0 16 559 4 1 220 0 4 145 0 1 128 2 0 7 2 1 22 chain 78672 chr2 242193529 + 13749881 13750750 L1PA3long 6157 + 5287 6157 21946 715 0 1 154 chain 174853 chr2 242193529 + 13808137 13810062 L1PA3long 6157 + 4227 6155 10847 135 0 4 275 1 0 1514 chain 5579 chr2 242193529 + 13824641 13824717 MLT1E2 623 + 48 123 82899 17 1 0 58 chain 72642 chr2 242193529 + 13842557 13843704 L1PB1 5432 + 4296 5412 23389 330 3 0 77 0 2 91 8 0 8 3 11 168 3 1 117 3 4 5 2 0 4 1 0 24 1 0 9 1 0 9 6 2 9 2 0 40 0 1 12 2 1 10 10 9 41 1 0 15 1 0 4 8 6 6 5 0 15 24 19 24 1 0 21 1 0 13 1 0 8 chain 51550 chr2 242193529 + 13849720 13850362 L1PA8 5853 + 5210 5853 29023 236 0 1 115 1 0 46 2 0 69 1 0 10 2 1 52 2 1 19 1 0 7 0 7 79 chain 72922 chr2 242193529 + 13867645 13868444 L1PA3long 6157 + 5358 6157 23329 799 chain 61281 chr2 242193529 + 13882575 13883247 L1PA3long 6157 + 5485 6157 26040 672 chain 181868 chr2 242193529 + 13909969 13911979 L1PA3long 6157 + 4109 6157 10504 1050 0 5 734 1 0 113 0 34 112 chain 18411 chr2 242193529 + 13925705 13926090 MER57-int 2662 + 55 349 58219 15 43 29 9 1 0 5 0 1 70 75 0 129 2 0 36 chain 29501 chr2 242193529 + 13933602 13933920 L1PA3long 6157 + 5574 5892 42608 318 chain 24071 chr2 242193529 + 13933921 13934187 L1PA3long 6157 + 5892 6157 50698 123 1 0 142 chain 62440 chr2 242193529 + 13952242 13952934 L1PA4 6152 + 4702 5393 25766 599 1 0 92 chain 49164 chr2 242193529 + 13998326 13998914 L1PA7 6471 + 5865 6461 29882 146 0 6 121 0 1 189 0 1 132 chain 3891 chr2 242193529 + 14006592 14006676 MLT1A0 366 + 205 288 92212 23 30 29 31 chain 29670 chr2 242193529 + 14045047 14045425 MLT2A1 477 + 4 381 42409 165 4 1 9 0 1 23 0 1 9 0 1 76 1 0 91 chain 9346 chr2 242193529 + 14069589 14069897 LTR47A 437 + 21 385 71825 40 42 101 12 40 32 21 71 76 82 chain 463466 chr2 242193529 + 14081821 14087713 L1PA7 6471 + 3 6431 4038 236 0 3 58 7 1 102 0 2 453 1 37 171 6 7 26 0 1 256 1 0 232 2 1 32 3 5 422 1 5 180 3 2 140 0 3 142 0 2 56 1 3 38 0 1 19 11 0 340 0 2 5 2 0 67 5 1 392 103 567 354 22 57 61 0 1 32 1 3 464 1 0 63 1 0 4 0 1 280 1 0 288 1 0 88 0 1 38 0 1 387 0 1 171 10 11 112 chain 539615 chr2 242193529 + 14099133 14105291 L1PA4 6152 + 2 6151 1363 578 1 0 254 17 0 600 1 0 873 0 1 383 4 8 1755 0 3 1068 0 1 151 0 1 473 chain 2861 chr2 242193529 + 14118202 14118235 MER2 342 + 133 166 101149 33 chain 84504 chr2 242193529 + 14159717 14160698 L1PA5 6144 + 5157 6141 20710 287 1 3 358 0 1 335 chain 77852 chr2 242193529 + 14175373 14176358 L1PA6 6164 + 5226 6161 22131 89 2 0 169 43 2 551 5 0 117 2 0 7 chain 4029 chr2 242193529 + 14183416 14183498 MER52D 1964 + 1108 1237 91252 43 22 69 17 chain 66679 chr2 242193529 + 14211867 14212609 L1PA3long 6157 + 5405 6148 24778 79 0 1 663 chain 21463 chr2 242193529 + 14246929 14247204 L1PA7 6471 + 4668 4947 54562 30 1 2 162 0 3 82 chain 41034 chr2 242193529 + 14247218 14247714 L1PA7 6471 + 4947 5443 33945 496 chain 21957 chr2 242193529 + 14247715 14247973 L1PA7 6471 + 5443 5700 53897 179 2 0 11 0 1 66 chain 65160 chr2 242193529 + 14247973 14248740 L1PA7 6471 + 5702 6470 25144 520 5 6 242 chain 5819 chr2 242193529 + 14274470 14274544 Tigger2a 444 + 134 208 81838 74 chain 5607 chr2 242193529 + 14332572 14332649 MER96B 391 + 45 121 82780 71 1 0 5 chain 33722 chr2 242193529 + 14336235 14336834 MLT2A2 560 + 1 560 38906 190 15 16 32 10 74 192 0 7 3 112 0 45 chain 3267 chr2 242193529 + 14346088 14346135 MLT2A1 477 + 431 477 97319 27 2 1 18 chain 9346 chr2 242193529 + 14355426 14355595 LTR48B 642 + 29 192 71826 33 10 0 19 14 17 74 5 6 14 chain 159081 chr2 242193529 + 14378950 14380746 L1PA4 6152 + 3422 5227 11802 241 0 1 622 0 2 63 0 4 622 0 1 238 0 1 10 chain 400399 chr2 242193529 + 14408778 14414157 L1PB1 5432 + 77 5424 5148 77 9 10 237 1 0 144 2 0 8 0 1 9 3 0 5 0 3 288 1 2 191 0 1 180 2 1 19 0 3 138 2 1 7 2 0 7 12 1 460 0 1 195 1 0 4 5 6 19 1 0 72 5 15 85 6 9 149 1 7 8 6 0 111 15 3 28 0 5 255 1 0 22 0 3 24 0 3 121 1 0 267 0 2 318 31 32 98 1 0 223 1 0 7 0 1 9 0 1 586 8 7 61 8 6 169 6 4 297 1 0 11 1 0 20 1 0 13 1 0 9 6 2 62 2 1 16 1 0 35 0 3 5 1 0 16 3 0 12 9 0 19 11 8 11 2 0 27 1 0 18 1 0 13 1 0 16 1 0 4 chain 81746 chr2 242193529 + 14438955 14439872 L1PA5 6144 + 5226 6143 21288 917 chain 44209 chr2 242193529 + 14491426 14491914 L1PA3long 6157 + 2982 3470 32006 488 chain 22213 chr2 242193529 + 14584325 14584606 AluSc5 308 + 10 297 53530 47 3 9 231 chain 3588 chr2 242193529 + 14606623 14606663 MLT2A1 477 + 436 476 94532 40 chain 4799 chr2 242193529 + 14622901 14622979 MLT1A 405 + 298 377 86705 13 11 12 54 chain 5440 chr2 242193529 + 14640920 14641075 MER53 195 + 8 159 83503 56 74 71 4 1 0 20 chain 79645 chr2 242193529 + 14662278 14663137 L1PA2 6032 + 5171 6032 21707 707 0 2 152 chain 13936 chr2 242193529 + 14680241 14680434 L1PA8 5853 + 5664 5853 63692 14 2 1 9 1 0 52 2 1 19 1 0 93 chain 45534 chr2 242193529 + 14748454 14748949 L1PA3long 6157 + 5478 5973 31292 495 chain 7339 chr2 242193529 + 14793177 14793270 MLT1B 390 + 281 373 76549 18 1 0 74 chain 47480 chr2 242193529 + 14802538 14803052 L1PA2 6032 + 5518 6032 30484 514 chain 26054 chr2 242193529 + 14810252 14810588 THE1B 368 + 0 350 47653 44 0 15 110 1 0 125 1 0 5 0 2 7 1 0 42 chain 553909 chr2 242193529 + 14848064 14854078 L1PA2 6032 + 0 6025 488 316 0 1 424 0 1 470 4 0 710 0 2 2510 0 10 514 0 1 1066 chain 4429 chr2 242193529 + 14963548 14963601 MER68 562 + 182 235 88740 53 chain 26628 chr2 242193529 + 14972080 14972409 L1PA8A 6298 + 5960 6291 46792 179 0 2 150 chain 36639 chr2 242193529 + 15015376 15016047 L1MA5A 2387 + 19 665 36989 29 2 0 9 129 102 22 3 0 16 7 5 10 1 0 193 5 6 66 0 12 28 3 0 148 chain 18919 chr2 242193529 + 15057902 15058142 L1PB1 5432 + 4774 5014 57624 240 chain 13928 chr2 242193529 + 15091293 15091472 Tigger2a 444 + 23 208 63705 63 1 7 115 chain 37964 chr2 242193529 + 15104961 15105407 L1PA7 6471 + 6015 6459 36097 79 2 0 365 chain 18598 chr2 242193529 + 15125597 15125842 MSTB-int 1649 + 1282 1531 57996 227 5 9 13 chain 28615 chr2 242193529 + 15143647 15144019 MLT2A1 477 + 0 372 43927 87 0 1 81 4 1 10 1 2 23 0 1 166 chain 14051 chr2 242193529 + 15207897 15208070 L1MA2 4263 + 631 802 63519 137 2 0 34 chain 328393 chr2 242193529 + 15247224 15251430 L1PA7 6471 + 2293 6433 6246 229 0 1 36 4 24 47 2 4 121 135 43 91 16 20 491 2 0 49 6 0 131 0 4 14 11 4 155 0 4 153 0 1 13 7 10 66 7 0 508 1 2 110 0 1 41 1 5 125 0 1 83 3 0 65 5 4 668 1 4 82 0 1 179 0 1 260 0 1 288 chain 75893 chr2 242193529 + 15258053 15259081 MER11A 1151 + 0 1151 22614 55 0 99 47 3 8 23 1 0 53 13 9 31 0 2 61 0 1 11 11 6 37 0 1 94 0 1 134 14 17 115 6 31 26 3 0 223 8 7 59 chain 23916 chr2 242193529 + 15283321 15283677 THE1C 375 + 20 375 50921 162 4 5 41 7 9 10 7 1 36 8 10 81 chain 41460 chr2 242193529 + 15302656 15303207 MLT2A2 560 + 0 560 33700 399 3 14 44 17 15 88 chain 518463 chr2 242193529 + 15316252 15322384 L1PA6 6164 + 0 6151 2341 250 2 1 18 1 0 298 1 0 119 0 1 56 0 1 643 0 4 55 1 0 506 0 2 189 1 0 14 0 1 173 2 0 186 0 1 186 1 2 363 1 2 113 5 6 81 0 1 102 0 1 168 0 2 158 3 0 803 1 5 804 1 0 53 0 5 131 0 3 90 1 0 199 0 2 353 chain 5771 chr2 242193529 + 15337368 15337451 L1PB1 5432 + 5349 5427 82034 21 1 0 21 1 0 13 1 0 18 2 0 5 chain 224171 chr2 242193529 + 15344277 15347112 L1PA8A 6298 + 3446 6291 8921 106 2 3 51 7 3 35 1 0 230 1 2 146 6 7 126 1 5 366 14 18 64 0 1 30 0 1 59 4 3 29 2 0 437 1 0 129 0 1 191 0 2 54 0 3 115 2 1 268 0 1 358 chain 30886 chr2 242193529 + 15370603 15370983 THE1D-int 1627 + 1238 1627 41232 110 0 1 100 0 4 138 0 3 23 0 1 9 chain 16079 chr2 242193529 + 15403440 15403708 MER2 342 + 87 339 60917 22 2 1 127 2 3 52 36 20 27 chain 5064 chr2 242193529 + 15428288 15428362 MER3 215 + 136 215 85336 4 1 0 16 1 7 52 chain 554308 chr2 242193529 + 15439501 15445665 L1PA3long 6157 + 0 6157 459 18 33 17 1127 0 3 1578 3 8 944 0 1 2461 chain 49972 chr2 242193529 + 15469409 15469982 L1PA5 6144 + 5556 6129 29574 573 chain 7509 chr2 242193529 + 15482818 15482911 MER39 703 + 592 685 76109 93 chain 8190 chr2 242193529 + 15484431 15484527 MER85 139 + 0 96 74435 96 chain 76198 chr2 242193529 + 15541756 15542631 SVA_D 2077 + 903 2066 22514 15 2 0 29 12 0 47 1 0 40 9 10 61 0 303 38 1 0 620 chain 20120 chr2 242193529 + 15678530 15678817 L1PA7 6471 + 6184 6454 56234 98 13 5 19 1 0 17 9 1 130 chain 3168 chr2 242193529 + 15795134 15795173 MER5A1 166 + 26 65 98221 39 chain 3504 chr2 242193529 + 15835071 15835115 LTR16E1 515 + 471 515 95217 44 chain 27288 chr2 242193529 + 15856796 15857093 AluYk4 311 + 0 298 45845 47 0 1 250 chain 81470 chr2 242193529 + 15877535 15878484 L1PA6 6164 + 5209 6159 21338 189 1 0 584 3 5 172 chain 18892 chr2 242193529 + 15882242 15882449 L1PA3long 6157 + 5950 6157 57646 207 chain 286424 chr2 242193529 + 15960364 15963620 L1PA5 6144 + 2872 6130 7247 306 0 2 40 0 1 64 1 0 122 1 0 275 0 1 975 8 7 473 0 1 691 0 1 160 1 0 139 chain 14053 chr2 242193529 + 15975138 15975330 MER30 238 + 0 237 63515 16 0 18 75 3 29 67 0 1 31 chain 7563 chr2 242193529 + 16088148 16088237 L1PA16 3655 + 3486 3575 75953 89 chain 44158 chr2 242193529 + 16132143 16132729 L1PB3 3668 + 2683 3272 32045 305 2 0 19 0 3 64 0 1 149 5 6 42 chain 29170 chr2 242193529 + 16133674 16133983 AluYg6 310 + 0 309 43096 309 chain 5581 chr2 242193529 + 16377443 16377518 MER33 330 + 22 142 82893 63 0 45 12 chain 16727 chr2 242193529 + 16445997 16446327 THE1D 372 + 0 339 60125 102 1 0 6 108 118 113 chain 26133 chr2 242193529 + 16573538 16573894 THE1B 368 + 0 367 47516 41 1 16 112 1 0 22 2 1 153 7 5 17 chain 3710 chr2 242193529 + 16575913 16575963 THE1B 368 + 176 224 93537 24 2 0 24 chain 11534 chr2 242193529 + 16575967 16576109 THE1B 368 + 226 368 67697 142 chain 7410 chr2 242193529 + 16576803 16576905 L1MB1 2102 + 1886 1985 76363 30 1 0 26 0 1 5 3 0 37 chain 26725 chr2 242193529 + 16780362 16780717 THE1B 368 + 0 368 46648 29 0 1 14 0 15 22 1 2 89 1 0 25 5 0 101 0 1 8 0 1 60 chain 10689 chr2 242193529 + 16801745 16801890 MER11B 1079 + 900 1046 69063 16 1 2 5 1 0 107 0 1 15 chain 108041 chr2 242193529 + 16878386 16879599 L1PA3long 6157 + 2557 3760 17318 578 8 0 35 2 1 91 2 1 497 chain 52052 chr2 242193529 + 16890189 16890905 Charlie3 2679 + 34 729 28863 25 10 14 40 23 6 110 8 0 489 0 1 4 1 0 6 chain 27732 chr2 242193529 + 16900895 16901344 HUERS-P2-int 2744 + 2315 2742 45273 62 1 0 62 0 2 69 3 1 33 1 0 4 2 0 31 2 1 11 1 0 6 6 4 15 1 0 42 6 0 27 22 17 13 2 0 27 chain 10667 chr2 242193529 + 16902369 16902518 HERVL-int 5654 + 1707 1857 69107 49 14 15 86 chain 305315 chr2 242193529 + 16912215 16916025 HERVL-int 5654 + 1807 5654 6714 131 1 2 127 5 0 192 10 41 457 1 0 28 0 3 396 8 9 85 0 1 869 4 18 38 6 0 157 2 0 606 0 1 79 10 11 220 0 3 84 1 0 4 0 1 27 0 1 6 9 1 29 3 4 138 0 1 77 chain 9627 chr2 242193529 + 16916139 16916290 MLT2A1 477 + 283 477 71205 102 31 74 18 chain 34571 chr2 242193529 + 16947467 16947936 MLT2A2 560 + 7 502 38305 148 1 0 14 32 48 185 0 11 89 chain 10220 chr2 242193529 + 16967192 16967332 MER85 139 + 0 139 69969 95 12 11 33 chain 30592 chr2 242193529 + 16998071 16998438 L1PA8 5853 + 3531 3898 41470 367 chain 97710 chr2 242193529 + 17066061 17067146 L1PA3long 6157 + 5070 6157 18562 663 0 1 280 0 1 142 chain 22898 chr2 242193529 + 17078403 17078738 THE1C 375 + 1 333 52516 76 46 43 213 chain 21334 chr2 242193529 + 17080368 17080679 THE1C 375 + 0 311 54721 69 1 0 56 11 8 53 0 1 7 16 19 98 chain 71632 chr2 242193529 + 17130237 17131100 L1PA4 6152 + 5221 6069 23629 704 32 0 50 12 29 65 chain 85484 chr2 242193529 + 17152854 17153827 L1PA5 6144 + 5154 6132 20537 52 0 1 90 0 4 831 chain 28098 chr2 242193529 + 17167288 17167815 L1PREC2 3366 + 2565 3048 44721 176 1 0 9 4 2 54 1 0 38 2 0 6 1 0 4 3 0 13 29 21 13 10 5 15 3 1 29 4 1 11 22 8 35 13 11 31 chain 113138 chr2 242193529 + 17193371 17194755 LTR12C 1709 + 0 1709 16658 338 0 43 269 0 278 111 0 1 32 0 2 38 1 0 5 3 1 96 10 14 481 chain 32331 chr2 242193529 + 17284057 17285696 L1PB1 5432 + 4867 5427 40090 236 1046 2 9 3 0 24 1 0 11 1 0 7 2 0 3 2 0 9 2 0 15 0 1 36 2 1 52 8 7 16 14 1 30 31 26 17 1 0 21 1 0 13 1 0 14 1 0 5 1 0 4 chain 24692 chr2 242193529 + 17321964 17322325 THE1B 368 + 2 368 49749 167 1 0 21 7 10 10 1 5 27 1 0 66 1 0 26 19 20 14 chain 31766 chr2 242193529 + 17335868 17336275 LTR7 482 + 0 476 40523 69 8 46 115 0 31 215 chain 60955 chr2 242193529 + 17338940 17339690 LTR17 781 + 0 781 26124 119 0 9 198 0 1 65 19 18 305 0 21 37 0 1 7 chain 375029 chr2 242193529 + 17341301 17345622 HERV17-int 4347 + 12 4347 5570 15 3 1 50 1 0 34 2 0 27 1 0 155 5 0 14 1 0 86 0 8 113 0 9 72 0 2 76 0 1 119 3 1 350 0 3 205 0 1 114 1 2 1302 0 1 977 1 0 5 0 1 6 0 2 583 chain 59086 chr2 242193529 + 17345936 17346706 LTR17 781 + 0 772 26640 111 8 17 166 12 4 29 0 1 61 1 0 312 17 18 53 chain 137664 chr2 242193529 + 17361419 17363089 L1PA7 6471 + 4809 6468 13288 15 2 1 140 9 7 18 1 2 629 1 0 643 2 0 44 17 18 135 7 0 7 chain 93900 chr2 242193529 + 17370653 17371682 L1PA3long 6157 + 4332 5361 19056 1029 chain 23149 chr2 242193529 + 17411518 17411873 THE1B 368 + 0 368 52143 44 1 16 114 2 1 101 37 36 56 chain 389456 chr2 242193529 + 17446303 17451718 L1PA8 5853 + 478 5853 5329 45 58 39 17 8 5 37 17 21 12 3 4 7 0 1 4 0 1 87 0 1 5 2 1 309 0 3 5 5 2 362 16 20 18 8 6 244 0 1 140 2 0 299 0 1 68 0 1 10 4 5 35 23 0 517 0 1 74 2 1 27 23 19 64 1 0 188 24 14 109 11 12 66 3 0 51 0 3 115 4 8 520 0 1 193 0 1 62 1 0 22 0 1 458 1 10 134 1 8 35 3 1 555 1 0 44 6 4 45 0 45 10 53 1 27 2 1 15 6 5 92 chain 120645 chr2 242193529 + 17464799 17466988 L1PA7 6471 + 4285 6461 15420 499 17 0 399 10 14 420 1 0 225 3 4 615 chain 16138 chr2 242193529 + 17483874 17484093 MER30 238 + 0 238 60832 95 11 30 113 chain 3788 chr2 242193529 + 17496772 17497008 L2a 937 + 108 326 92928 37 174 156 25 chain 19109 chr2 242193529 + 17565748 17566078 THE1C 375 + 0 334 57436 64 0 2 21 3 4 11 10 16 57 43 39 100 6 5 15 chain 143212 chr2 242193529 + 17691448 17693058 L1PA4 6152 + 3870 5493 12840 24 1 3 305 0 2 145 0 8 699 0 1 436 chain 3840 chr2 242193529 + 17746132 17746220 MLT1D 503 + 309 396 92563 36 34 33 18 chain 51743 chr2 242193529 + 17796837 17797411 L1PA5 6144 + 5576 6144 28956 229 6 0 339 chain 38336 chr2 242193529 + 17814124 17814734 L1PB3 3668 + 2987 3565 35823 14 3 0 81 0 2 81 36 30 95 1 0 95 7 6 46 0 1 40 20 4 21 6 0 25 3 1 36 chain 45655 chr2 242193529 + 17824507 17825132 LTR71B 605 + 0 605 31231 125 16 17 6 6 0 29 2 1 12 0 5 153 25 6 251 chain 3370 chr2 242193529 + 17859807 17859866 MLT1A0 366 + 1 58 96397 22 9 7 28 chain 47743 chr2 242193529 + 17883739 17884266 L1PA5 6144 + 5617 6144 30380 527 chain 63401 chr2 242193529 + 17998951 17999722 L1PA8A 6298 + 5496 6270 25544 425 0 2 264 1 2 81 chain 78767 chr2 242193529 + 18002550 18003530 L1PA7 6471 + 5488 6469 21927 5 3 0 5 0 3 120 0 3 120 2 1 365 5 6 343 2 0 10 chain 176702 chr2 242193529 + 18079661 18081767 L1PA6 6164 + 4060 6156 10741 310 0 4 339 17 1 518 2 1 84 0 6 461 2 1 228 9 7 136 chain 113266 chr2 242193529 + 18114328 18115829 THE1B-int 1605 + 0 1600 16640 12 4 6 255 0 6 116 1 65 558 3 4 132 6 7 34 0 17 87 3 0 32 0 9 22 16 18 220 chain 12055 chr2 242193529 + 18118474 18118634 THE1-int 844 + 462 623 66750 28 6 7 126 chain 6194 chr2 242193529 + 18154236 18154308 MLT1D 503 + 76 148 80378 72 chain 24122 chr2 242193529 + 18157641 18157917 AluY 311 + 34 310 50618 276 chain 58830 chr2 242193529 + 18175159 18176045 L1PB1 5432 + 4544 5404 26729 65 5 13 7 2 0 417 0 1 6 1 0 49 1 0 12 1 0 24 1 0 9 30 23 50 2 1 16 1 0 44 1 0 9 31 19 18 8 5 14 2 0 24 1 0 21 1 0 13 chain 20735 chr2 242193529 + 18192321 18192698 THE1C 375 + 9 375 55446 67 18 19 12 6 7 28 7 11 19 43 26 77 0 1 73 1 0 26 chain 123353 chr2 242193529 + 18202704 18204279 THE1A-int 1579 + 0 1579 14973 129 0 1 729 1 0 4 8 9 249 6 9 449 chain 3521 chr2 242193529 + 18243453 18243494 MSTA 426 + 385 426 95093 41 chain 144710 chr2 242193529 + 18284742 18286449 L1PA7 6471 + 4747 6465 12712 232 1 0 348 0 6 281 0 3 629 0 2 30 0 2 35 0 1 143 2 0 6 chain 26329 chr2 242193529 + 18306495 18306854 THE1B 368 + 0 368 47229 44 6 21 107 1 0 23 4 0 99 1 0 74 chain 126544 chr2 242193529 + 18313961 18315408 L1PA5 6144 + 4667 6135 14472 630 0 4 18 0 1 639 0 16 160 chain 30275 chr2 242193529 + 18333053 18333489 L1P4 1494 + 920 1360 41787 121 6 9 54 17 19 227 1 0 10 chain 41258 chr2 242193529 + 18343014 18343541 MER41A 554 + 1 533 33813 130 23 24 254 0 4 120 chain 6571 chr2 242193529 + 18408577 18408690 MER63A 208 + 81 198 79075 74 24 28 15 chain 14148 chr2 242193529 + 18539236 18539444 AluSp 311 + 61 287 63382 71 1 0 6 23 42 107 chain 47899 chr2 242193529 + 18558380 18559051 MER4A 717 + 0 682 30328 25 0 1 95 0 3 5 3 0 29 0 13 56 6 0 46 1 0 142 0 2 91 13 14 11 6 8 6 1 0 135 chain 30426 chr2 242193529 + 18568644 18569034 MER4A1 472 + 33 472 41655 141 0 49 249 chain 4311 chr2 242193529 + 18615162 18615247 L1MA8 2339 + 2180 2263 89435 13 7 8 32 2 0 24 1 0 6 chain 47561 chr2 242193529 + 18632232 18632924 THE1B-int 1605 + 0 706 30457 13 4 5 92 53 0 191 9 10 84 0 64 20 11 11 148 0 1 67 chain 6983 chr2 242193529 + 18716564 18716836 LTR49 580 + 11 275 77661 49 33 34 41 1 0 9 123 115 16 chain 24561 chr2 242193529 + 18724466 18724771 MLT2A2 560 + 0 560 49921 200 0 1 12 8 262 85 chain 216376 chr2 242193529 + 18733710 18737382 L1PA7 6471 + 3848 6469 9139 244 0 1 394 0 1 177 0 8 276 1 0 337 0 1 20 0 5 235 4 5 63 1 4 250 1073 0 470 0 3 127 chain 117863 chr2 242193529 + 18865336 18867209 THE1B-int 1605 + 0 1596 15908 338 1 3 55 313 0 36 7 32 48 0 1 6 1 0 51 5 4 436 0 14 11 13 0 339 2 5 63 8 14 140 chain 29449 chr2 242193529 + 18875424 18875734 AluYg6 310 + 0 310 42672 310 chain 310573 chr2 242193529 + 18878251 18882065 HERVL-int 5654 + 423 5654 6602 102 8 0 149 4 5 163 1 0 4 0 1 276 0 1 209 6 1370 259 0 38 215 1 0 1267 3 18 166 0 2 228 0 5 324 2 0 139 0 1 69 1 2 218 chain 101087 chr2 242193529 + 18955947 18957226 L1PA7 6471 + 5183 6470 18172 13 0 1 128 9 8 288 1 0 89 1 0 390 20 20 17 1 0 176 4 10 26 0 7 103 2 0 11 chain 52210 chr2 242193529 + 18964469 18965103 L1P3 4156 + 3506 4139 28815 460 0 1 122 0 1 14 14 11 24 chain 9614 chr2 242193529 + 18996945 18997047 AluYb8 318 + 187 289 71236 102 chain 498913 chr2 242193529 + 19089266 19095388 L1PA6 6164 + 0 6162 3165 416 1 2 149 1 0 336 0 4 70 0 1 45 1 0 388 0 4 48 0 4 192 4 7 659 11 0 94 6 7 137 0 1 633 9 8 85 6 5 227 0 1 180 7 22 166 8 1 40 0 52 324 0 2 80 1 0 258 0 1 103 56 1 252 0 24 285 0 5 102 1 0 382 3 1 347 0 2 9 chain 41800 chr2 242193529 + 19096232 19096780 MLT2A2 560 + 12 560 33489 192 18 8 96 1 0 94 0 11 147 chain 294521 chr2 242193529 + 19164399 19167658 L1PA3long 6157 + 2888 6157 6996 300 0 1 1164 4 12 1025 0 1 46 0 1 572 1 0 147 chain 45263 chr2 242193529 + 19200480 19201001 L1PA2 6032 + 5510 6032 31440 266 3 1 111 0 1 111 0 1 17 0 1 13 chain 118524 chr2 242193529 + 19211243 19212576 L1PA5 6144 + 3839 5176 15803 793 0 1 264 0 4 117 1 0 158 chain 6545 chr2 242193529 + 19212586 19212658 MSTA 426 + 354 426 79173 72 chain 64425 chr2 242193529 + 19253739 19254822 L1PA7 6471 + 5682 6452 25321 15 1 3 98 319 0 212 0 2 44 0 1 79 0 1 315 chain 30470 chr2 242193529 + 19257454 19257966 L1PB2 3958 + 3341 3838 41605 19 21 15 81 5 3 83 30 28 48 1 0 63 2 1 67 10 8 18 1 0 63 chain 30801 chr2 242193529 + 19284054 19284662 L1PREC2 3366 + 2499 3063 41306 218 4 3 32 2 0 47 11 10 30 91 74 9 2 0 29 3 0 12 22 8 38 3 1 41 3 1 11 chain 552382 chr2 242193529 + 19305839 19311862 L1PA2 6032 + 1 6030 589 1058 0 1 2079 1 0 2037 0 4 47 0 1 30 0 1 771 chain 7417 chr2 242193529 + 19313989 19314076 L1P2 5180 + 2 89 76351 87 chain 60618 chr2 242193529 + 19410936 19411617 L1PA4 6152 + 5469 6152 26200 675 0 2 6 chain 15912 chr2 242193529 + 19453391 19453617 L1PA8 5853 + 5610 5832 61135 68 15 13 49 2 1 19 1 0 72 chain 29782 chr2 242193529 + 19566304 19566664 L1PA7 6471 + 6112 6469 42255 24 1 2 323 4 0 8 chain 438453 chr2 242193529 + 19581431 19587069 L1PA7 6471 + 1128 6470 4602 130 0 3 320 1 6 19 20 8 776 0 3 239 0 1 271 0 1 4 1 0 186 1 5 732 1 0 500 0 1 69 0 12 416 2 0 284 0 1 116 25 23 370 0 4 82 2 0 93 312 1 332 0 1 168 10 11 143 2 0 11 chain 40350 chr2 242193529 + 19595384 19595933 MLT2A2 560 + 0 560 34412 185 15 5 9 0 10 197 0 11 89 0 4 10 4 0 40 chain 4465 chr2 242193529 + 19616426 19616519 L1MDa 1598 + 1264 1355 88523 49 27 25 17 chain 7123 chr2 242193529 + 19622011 19622267 L1PB1 5432 + 5114 5376 77184 4 1 0 20 11 9 9 2 0 3 2 0 8 0 34 16 9 8 11 1 0 42 6 5 13 27 15 15 31 26 18 1 0 6 chain 2748 chr2 242193529 + 19622490 19622626 L1MA10 1535 + 1419 1535 101983 26 91 71 19 chain 4811 chr2 242193529 + 19644945 19645004 L1MD3 1191 + 1099 1158 86642 59 chain 24757 chr2 242193529 + 19781931 19782288 THE1A 353 + 0 353 49650 48 0 1 45 1 0 17 0 2 6 17 15 103 5 0 93 7 8 15 chain 93405 chr2 242193529 + 19782288 19783533 THE1A-int 1579 + 0 1286 19128 251 0 25 15 7 6 240 6 10 97 18 21 495 9 19 107 chain 8250 chr2 242193529 + 19784002 19784115 THE1A 353 + 0 111 74287 13 2 0 34 0 1 48 1 0 15 chain 89387 chr2 242193529 + 19832558 19833528 L1PA2 6032 + 5062 6032 19781 970 chain 35666 chr2 242193529 + 19846866 19847272 L1PA5 6144 + 5728 6135 37619 261 0 1 145 chain 14101 chr2 242193529 + 19914935 19915091 L1PA7 6471 + 6309 6466 63454 58 0 1 98 chain 518666 chr2 242193529 + 19915950 19922725 L1PA7 6471 + 0 6468 2327 240 0 10 158 1 2 127 1 0 41 8 9 152 1 13 267 20 1 75 0 4 59 0 2 741 0 2 97 0 1 519 0 4 109 8 0 49 11 12 391 2 3 67 0 1 4 347 8 392 6 10 235 0 1 451 1 2 695 0 3 572 0 8 84 9 8 71 0 2 578 7 8 19 1 2 159 chain 41030 chr2 242193529 + 19922746 19923259 MER9a2 513 + 0 513 33949 255 3 21 7 18 0 230 chain 248531 chr2 242193529 + 19924878 19927997 HERVK9-int 4720 + 37 4720 8278 12 8 5 4 1 0 24 0 3 39 1 0 7 2 1 30 1 0 112 0 1 35 0 12 151 1 3 74 6 5 90 2 0 4 0 1 846 0 924 231 51 689 299 7 1 308 0 1 98 1 0 286 1 0 347 1 0 4 11 12 24 chain 43707 chr2 242193529 + 19927997 19928511 MER9a2 513 + 0 513 32319 18 2 0 104 0 1 390 chain 2902 chr2 242193529 + 19948673 19948711 L1MD2 1676 + 1422 1459 100826 21 1 0 16 chain 6266 chr2 242193529 + 19976544 19976625 MLT1B 390 + 259 340 80101 81 chain 27394 chr2 242193529 + 20009292 20009645 L1PA8 5853 + 5507 5853 45714 57 1 0 44 2 0 71 1 0 9 1 0 47 7 6 19 1 0 93 chain 31651 chr2 242193529 + 20009662 20010067 MER4E1 777 + 347 749 40623 194 12 9 199 chain 121789 chr2 242193529 + 20025762 20027102 L1PA3long 6157 + 4813 6157 15213 497 0 4 843 chain 28928 chr2 242193529 + 20028628 20030931 L1PA15 4387 + 2001 3857 43436 26 34 36 24 6 9 47 3 7 64 2 0 40 1712 1279 21 36 23 120 10 8 107 0 10 11 20 3 4 0 1 16 chain 28991 chr2 242193529 + 20046008 20046358 L1PA6 6164 + 5820 6162 43335 173 7 1 160 2 0 8 chain 20539 chr2 242193529 + 20053988 20054274 LTR32 486 + 7 279 55732 139 23 9 124 chain 23255 chr2 242193529 + 20063206 20063544 THE1B 368 + 1 368 51993 43 0 15 110 1 0 29 34 45 58 0 4 63 chain 40524 chr2 242193529 + 20073831 20074445 LTR76 689 + 0 648 34294 14 0 8 18 4 0 9 0 3 77 8 28 224 4 11 55 2 33 69 2 1 45 1 0 11 0 1 32 30 0 9 chain 254672 chr2 242193529 + 20083018 20086306 HERVH-int 3825 + 3 3566 8121 63 7 8 241 16 17 78 9 8 39 13 73 22 0 209 17 1 0 214 0 1 104 0 7 122 48 21 184 9 0 257 0 27 371 4 9 510 0 14 170 11 0 226 1 0 53 1 0 24 0 3 203 2 0 268 chain 4987 chr2 242193529 + 20113141 20113221 MIRb 242 + 61 140 85713 6 2 0 58 3 4 11 chain 7061 chr2 242193529 + 20175815 20175908 U6 107 + 11 106 77400 36 0 3 18 1 0 38 chain 2477 chr2 242193529 + 20369005 20369054 LTR29 598 + 509 561 103728 25 7 11 6 1 0 10 chain 547528 chr2 242193529 + 20458307 20464773 L1PA7 6471 + 0 6461 892 403 0 1 1252 0 2 5 2 0 969 14 0 115 0 1 791 1 2 936 0 1 477 2 1 362 0 7 279 11 10 847 chain 8832 chr2 242193529 + 20480844 20480953 HY1 111 + 1 111 72913 27 0 1 82 chain 15981 chr2 242193529 + 20601436 20601736 THE1B 368 + 0 307 61048 134 45 48 10 6 8 14 0 4 6 22 20 63 chain 3706 chr2 242193529 + 20647501 20647559 MER5A 189 + 4 65 93570 24 5 8 29 chain 7060 chr2 242193529 + 20709382 20709492 L1MB7 1623 + 1097 1207 77405 58 2 3 29 0 4 6 5 0 10 chain 379549 chr2 242193529 + 20711419 20715894 L1P2 5180 + 2 4507 5493 148 2 1 26 11 12 5 1 0 53 3 2 247 0 2 17 1 0 172 0 6 94 0 15 337 5 6 301 1 0 513 0 3 245 0 2 183 0 4 1301 0 2 642 3 4 155 2 0 7 chain 72403 chr2 242193529 + 20715894 20716724 L1PA6 6164 + 5322 6152 23265 830 chain 6251 chr2 242193529 + 20721437 20721533 L1PB1 5432 + 5337 5427 80172 9 2 0 24 1 0 21 1 0 13 1 0 18 1 0 5 chain 3043 chr2 242193529 + 20722560 20722595 L1MA4 2864 + 2774 2809 99390 35 chain 22458 chr2 242193529 + 20738290 20738572 MER41C 542 + 232 535 53185 76 0 19 8 1 3 197 chain 25204 chr2 242193529 + 20750681 20751048 L1PA16 3655 + 3263 3619 48941 314 17 13 6 2 0 7 5 0 16 chain 3947 chr2 242193529 + 20767953 20767994 MER52D 1964 + 1100 1141 91783 41 chain 11371 chr2 242193529 + 20778081 20778218 LTR5_Hs 974 + 0 137 67970 137 chain 13788 chr2 242193529 + 20779267 20779437 L1PA8A 6298 + 6097 6267 63900 75 0 1 16 1 0 78 chain 23594 chr2 242193529 + 20809110 20809406 AluSc5 308 + 1 288 51443 125 9 0 162 chain 208610 chr2 242193529 + 20819466 20821764 L1PA5 6144 + 3829 6132 9395 129 0 5 2169 chain 10715 chr2 242193529 + 20830099 20830226 THE1D 372 + 246 372 69019 94 1 0 32 chain 18410 chr2 242193529 + 20872066 20872297 L1P1 4361 + 4 760 58221 86 0 525 145 chain 23536 chr2 242193529 + 20884838 20885189 THE1B 368 + 0 368 51527 44 0 15 33 0 3 64 17 16 73 4 5 88 2 0 6 2 3 18 chain 27089 chr2 242193529 + 20889103 20889389 AluYd8 298 + 0 286 46139 286 chain 29997 chr2 242193529 + 20904321 20905031 MLT2A1 477 + 0 477 42057 168 4 2 8 1 2 18 0 1 159 22 9 18 259 41 11 7 5 35 chain 86811 chr2 242193529 + 21079606 21080604 L1PA7 6471 + 4871 5872 20259 616 0 1 210 0 2 172 chain 12980 chr2 242193529 + 21121096 21121315 L1MA4 2864 + 1956 2166 65140 34 20 16 6 3 0 89 2 0 17 1 0 15 0 1 32 chain 77929 chr2 242193529 + 21152410 21153409 L1PA10 4194 + 3161 4161 22116 233 3 0 81 0 3 305 4 14 221 7 2 95 4 1 34 1 0 11 chain 2967 chr2 242193529 + 21237816 21237850 MADE1 96 - 60 94 100214 34 chain 542627 chr2 242193529 + 21335938 21342061 L1PA4 6152 + 1 6151 1168 930 5 0 200 0 13 88 4 5 809 0 1 366 0 1 1101 1 2 460 0 9 209 0 2 230 1 0 3 1 0 172 0 1 697 1 5 691 0 1 154 chain 20594 chr2 242193529 + 21354245 21354608 MER83B 357 + 0 340 55650 41 0 1 37 16 18 28 0 1 5 62 31 47 1 5 126 chain 25371 chr2 242193529 + 21438133 21438514 THE1C 375 + 0 375 48666 180 1 0 4 32 33 29 6 0 129 chain 19543 chr2 242193529 + 21566842 21567106 L1PA8 5853 + 5586 5853 56967 23 2 0 70 1 0 9 1 0 49 0 8 15 4 3 90 chain 84623 chr2 242193529 + 21583851 21585202 L1P2 5180 + 1689 2770 20699 39 0 1 561 263 10 19 16 0 30 1 0 174 1 3 29 1 0 25 0 1 62 3 0 127 chain 5147 chr2 242193529 + 21618485 21618561 MER33 330 + 215 292 84919 30 5 6 41 chain 4422 chr2 242193529 + 21634663 21634868 MLT1A0 366 + 8 216 88777 12 5 6 7 1 0 15 116 119 49 chain 12049 chr2 242193529 + 21704037 21704176 MER85 139 + 0 139 66761 139 chain 39420 chr2 242193529 + 21790432 21790921 LTR3B_ 500 + 2 496 35062 299 1 3 117 6 9 66 chain 3079 chr2 242193529 + 21811371 21811406 MSTA 426 + 387 422 98986 35 chain 20731 chr2 242193529 + 21931940 21932191 L1PA6 6164 + 5905 6162 55454 113 1 7 137 chain 540392 chr2 242193529 + 22156444 22162460 L1PA3long 6157 + 0 6156 1316 153 0 1 618 4 132 52 0 4 4145 0 1 211 0 1 579 0 1 4 1 0 106 0 5 143 chain 89840 chr2 242193529 + 22168022 22169338 L1PBa 3878 + 2442 3748 19712 17 32 1 173 31 31 10 0 1 32 0 1 307 7 21 8 13 0 4 0 1 104 0 2 67 6 0 148 0 6 27 0 12 89 0 1 76 0 1 7 0 1 4 1 0 59 0 3 30 1 3 26 2 1 12 2 1 8 2 0 11 chain 41620 chr2 242193529 + 22170022 22170576 MLT2A2 560 + 0 560 33615 88 1 4 36 7 8 54 3 0 5 5 9 347 0 1 8 chain 107673 chr2 242193529 + 22186160 22187554 LTR12C 1709 + 0 1709 17368 202 4 4 65 14 15 52 0 43 18 1 0 63 9 11 177 0 278 183 1 0 6 3 1 99 7 11 257 18 1 59 0 8 156 chain 3676 chr2 242193529 + 22239158 22239225 MADE1 96 - 4 87 93766 28 15 31 24 chain 335439 chr2 242193529 + 22304355 22308109 L1PA3long 6157 + 0 6157 6135 427 0 5 265 0 2398 2504 1 7 9 6 0 542 chain 8684 chr2 242193529 + 22309473 22309623 Tigger4b 360 + 207 347 73250 9 9 0 86 13 12 33 chain 5831 chr2 242193529 + 22309964 22310067 L1PB1 5432 + 5320 5424 81780 7 2 0 4 1 0 15 2 0 24 1 0 21 1 0 7 0 9 11 1 0 6 chain 18870 chr2 242193529 + 22310722 22311096 L1MA5A 2387 + 1960 2295 57686 50 10 9 15 7 0 7 16 18 48 1 0 33 0 1 14 3 1 30 8 9 20 3 0 15 29 0 65 chain 4940 chr2 242193529 + 22395224 22395319 L1MA4 2864 + 2730 2812 85933 7 11 0 24 7 5 46 chain 27876 chr2 242193529 + 22416231 22416597 L1PA8A 6298 + 5924 6291 45071 264 16 17 86 chain 119636 chr2 242193529 + 22475481 22477349 THE1B-int 1605 + 28 1600 15587 397 1 26 53 341 13 157 0 3 174 0 4 315 0 1 5 6 5 419 chain 176153 chr2 242193529 + 22522389 22524392 L1PA4 6152 + 4143 6143 10770 521 0 1 628 2 1 523 1 2 174 15 11 139 chain 9332 chr2 242193529 + 22544850 22544975 MER85 139 + 2 137 71851 94 3 13 28 chain 274685 chr2 242193529 + 22590140 22593958 L1PA10 4194 + 304 4138 7587 9 1 0 22 2 0 6 40 29 10 1 0 15 11 2 6 1 0 81 2 0 38 19 23 557 4 0 13 5 6 75 0 1 90 0 5 173 6 7 175 0 4 11 5 8 41 0 2 189 10 1 29 0 1 68 0 1 103 10 11 77 0 1 189 0 3 528 3 7 40 1 2 61 39 0 8 0 39 94 9 22 67 8 15 38 0 5 183 7 1 22 21 22 90 0 8 120 4 3 321 1 0 34 3 0 22 chain 29907 chr2 242193529 + 22643742 22644148 L1PA8 5853 + 5447 5849 42128 117 1 0 25 0 2 17 2 0 67 5 4 9 1 0 52 2 1 19 1 0 29 1 2 58 chain 26633 chr2 242193529 + 22705850 22706157 L1P1 4361 + 2760 3065 46787 6 2 0 299 chain 223011 chr2 242193529 + 22731494 22734275 L1PA7 6471 + 3714 6469 8958 69 12 18 864 9 11 264 10 9 672 1 0 79 0 2 409 27 0 169 55 50 128 2 0 11 chain 33952 chr2 242193529 + 22831490 22831938 L1PA8 5853 + 5410 5853 38746 154 1 0 44 2 0 31 0 1 33 17 15 11 0 1 40 2 1 19 1 0 93 chain 6696 chr2 242193529 + 22930802 22930970 MER74C 455 + 0 166 78658 8 1 0 20 0 1 54 67 65 18 chain 124169 chr2 242193529 + 22971530 22973856 L1MA2 4263 + 2248 4111 14819 126 4 1 62 6 9 37 0 1 72 0 4 84 3 1 103 2 0 26 0 8 60 6 3 60 1 5 158 10 8 336 23 26 17 22 17 89 6 5 17 6 3 76 6 5 45 5 0 8 0 1 75 13 10 51 1 0 13 455 0 79 15 20 89 6 0 16 0 1 30 1 0 6 chain 30631 chr2 242193529 + 22973164 22973614 MLT2A1 477 + 0 477 41443 33 0 5 131 4 1 124 1 2 89 15 56 12 17 0 24 chain 550202 chr2 242193529 + 22984153 22990168 L1PA2 6032 + 2 6032 730 695 7 0 4057 1 0 321 0 25 919 2 0 13 chain 41779 chr2 242193529 + 23045871 23046390 L1PA8 5853 + 5340 5853 33503 224 1 0 44 2 0 71 1 0 12 1 0 49 2 1 9 0 1 12 1 0 90 chain 42438 chr2 242193529 + 23090028 23090564 MLT2A2 560 + 4 560 33104 199 0 1 184 6 25 147 chain 523424 chr2 242193529 + 23171551 23177681 L1PA5 6144 + 0 6132 2118 121 0 14 134 8 1 900 8 0 263 1 0 383 0 7 11 0 4 473 0 3 837 1 5 556 2 0 905 0 1 349 1 0 148 0 1 230 14 0 722 5 6 58 chain 27551 chr2 242193529 + 23368660 23368960 AluYd8 298 + 0 298 45512 111 2 0 187 chain 121416 chr2 242193529 + 23440147 23441489 L1PA3long 6157 + 4815 6157 15273 1342 chain 2649 chr2 242193529 + 23569545 23569617 Tigger16a 304 + 170 240 102726 26 30 28 16 chain 518070 chr2 242193529 + 23736568 23742392 L1PA4 6152 + 12 5829 2364 437 0 1 6 12 6 118 1 0 151 1 2 301 1 0 196 2 1 3074 1 0 53 0 1 1470 chain 36838 chr2 242193529 + 23767026 23767487 LTR10F 562 + 7 527 36856 175 0 59 138 3 2 97 4 5 44 chain 20902 chr2 242193529 + 23811515 23811751 L1PA7 6471 + 6228 6464 55250 236 chain 9449 chr2 242193529 + 23850537 23850733 L1MC2 1988 + 1566 1753 71605 100 68 59 28 chain 225334 chr2 242193529 + 23906605 23909141 L1PA3long 6157 + 3632 6157 8878 1019 20 0 431 1 0 228 0 4 590 2 1 107 0 7 138 chain 22009 chr2 242193529 + 23910944 23911235 AluSp 311 + 0 295 53821 128 12 17 136 2 1 13 chain 3343 chr2 242193529 + 23972879 23972917 Charlie1 1172 + 109 147 96670 38 chain 24408 chr2 242193529 + 23995438 23995720 AluY 311 + 29 310 50157 104 1 0 177 chain 9875 chr2 242193529 + 24013673 24013815 MER30 238 + 0 178 70670 21 1 21 56 1 17 63 chain 22250 chr2 242193529 + 24028119 24028405 AluSg4 309 + 10 293 53475 46 0 3 146 0 3 5 3 0 74 6 0 6 chain 26694 chr2 242193529 + 24077928 24078310 MER34D 576 + 14 404 46695 159 1 4 4 0 1 22 6 8 66 5 0 55 5 12 59 chain 523607 chr2 242193529 + 24095157 24101258 L1PA6 6164 + 18 6150 2106 219 0 2 279 0 2 47 1 0 669 0 1 190 5 4 385 0 4 39 0 5 417 0 1 43 11 0 72 0 4 782 1 2 88 0 2 758 0 1 69 1 11 248 0 4 218 0 1 96 6 5 305 0 1 323 0 6 829 chain 21608 chr2 242193529 + 24221965 24222230 AluY 311 + 1 261 54343 23 6 0 102 0 1 134 chain 27007 chr2 242193529 + 24267086 24267395 L1PA7 6471 + 6160 6470 46261 173 0 1 136 chain 14138 chr2 242193529 + 24289713 24289896 MER30 238 + 25 236 63396 83 4 32 96 chain 109080 chr2 242193529 + 24355344 24357583 L1PA8A 6298 + 4941 6290 17175 278 0 1 147 605 0 122 0 3 78 0 2 48 294 0 57 1 0 30 0 1 442 0 2 32 6 7 99 chain 8679 chr2 242193529 + 24421134 24421601 MER44A 345 + 195 345 73261 34 327 12 6 1 0 17 0 2 69 3 0 10 chain 26390 chr2 242193529 + 24451798 24452154 THE1B 368 + 0 368 47135 23 2 1 16 0 15 117 2 1 53 1 0 142 chain 115150 chr2 242193529 + 24483271 24484667 THE1A-int 1579 + 177 1579 16365 149 5 6 392 5 6 215 2 1 496 0 5 132 chain 28783 chr2 242193529 + 24637290 24637601 L1PA3long 6157 + 5596 5907 43656 311 chain 5705 chr2 242193529 + 24837895 24837971 MER30 238 + 165 238 82316 25 3 0 48 chain 27202 chr2 242193529 + 24844816 24845169 THE1A 353 + 0 353 45961 36 0 1 65 19 18 233 chain 119159 chr2 242193529 + 24845169 24847053 THE1A-int 1579 + 0 1579 15668 265 0 3 68 0 2 100 0 2 66 1 5 240 0 1 110 1 0 227 1 0 186 13 4 92 339 29 38 1 6 68 1 0 67 chain 25574 chr2 242193529 + 24847053 24847389 THE1A 353 + 0 339 48361 110 11 10 72 0 4 143 chain 45803 chr2 242193529 + 24848059 24848572 MER9a1 513 + 0 513 31165 513 chain 29138 chr2 242193529 + 24863108 24863546 MLT2A1 477 + 0 477 43139 161 11 9 12 0 1 20 0 1 20 3 0 96 5 7 58 19 55 27 0 4 6 chain 21532 chr2 242193529 + 24906043 24906322 AluSx 319 + 19 301 54465 256 4 7 19 chain 201797 chr2 242193529 + 24988053 24990691 HERVL-int 5654 + 2696 5325 9650 130 17 1 67 6 0 116 2 0 6 0 2 59 0 1 533 0 7 196 1 25 110 1 0 48 9 19 303 0 1 14 5 10 68 54 14 67 6 10 395 6 7 319 10 11 90 chain 8414 chr2 242193529 + 24992346 24992445 MER61-int 3695 + 2288 2387 73868 99 chain 29218 chr2 242193529 + 25004760 25005071 AluYb8 318 + 0 310 43023 132 1 0 178 chain 20162 chr2 242193529 + 25048588 25048894 LTR13 1007 + 0 955 56177 30 1 14 29 21 19 114 0 636 83 0 2 28 chain 31475 chr2 242193529 + 25175401 25175778 MER41A 554 + 0 379 40753 93 0 1 122 3 0 17 0 3 82 0 1 60 chain 10326 chr2 242193529 + 25221030 25221159 MER85 139 + 0 139 69749 90 0 10 39 chain 58986 chr2 242193529 + 25370345 25371122 MER4E1 777 + 0 777 26673 141 4 0 85 2 0 16 1 0 87 0 19 69 4 7 12 0 1 99 18 3 11 2 1 226 chain 247444 chr2 242193529 + 25391658 25395367 L1PB1 5432 + 2051 5422 8295 217 0 3 104 0 4 69 0 3 42 9 0 27 327 0 143 11 14 149 1 0 16 1 0 165 0 1 4 1 0 29 0 10 170 0 4 484 40 29 527 0 2 178 1 3 154 0 4 22 1 2 91 0 1 74 5 8 290 20 20 24 2 1 5 1 0 14 5 1 9 2 0 52 6 5 12 1 0 44 1 0 15 1 0 6 18 9 15 1 0 5 3 1 16 2 0 22 1 0 21 1 0 13 1 0 18 chain 7327 chr2 242193529 + 25395981 25396115 L1PB1 5432 + 5028 5158 76575 75 13 11 24 1 0 4 6 5 11 chain 5285 chr2 242193529 + 25396120 25396192 L1PB1 5432 + 5159 5229 84264 9 2 0 61 chain 3882 chr2 242193529 + 25396200 25396245 L1PB1 5432 + 5236 5281 92274 45 chain 5958 chr2 242193529 + 25397393 25397463 L1MB8 1703 + 1495 1565 81239 70 chain 35230 chr2 242193529 + 25407120 25407657 L1PB3 3668 + 3041 3556 37878 247 5 4 91 5 3 4 0 1 83 27 8 19 10 11 16 3 1 27 chain 9271 chr2 242193529 + 25410700 25410817 LTR23 429 + 114 231 71974 117 chain 26084 chr2 242193529 + 25448575 25448875 AluY 311 + 3 302 47599 129 0 1 111 2 0 58 chain 17127 chr2 242193529 + 25458143 25458391 MER75 514 + 260 514 59668 14 13 16 193 5 8 23 chain 44616 chr2 242193529 + 25540562 25541051 SVA_D 2077 + 1583 2076 31782 395 0 4 94 chain 4239 chr2 242193529 + 25584893 25584968 Charlie1a 1436 + 1360 1436 89893 45 13 14 17 chain 163438 chr2 242193529 + 25633187 25635070 SVA_D 2077 + 58 2076 11516 563 8 0 275 28 80 20 0 63 198 0 1 4 10 37 8 0 1 80 0 1 4 10 8 675 chain 1756 chr2 242193529 + 25634033 25634061 SVA_D 2077 + 856 884 63708 28 chain 118250 chr2 242193529 + 25637028 25638367 L1PA5 6144 + 4803 6143 15840 1184 9 10 146 chain 43531 chr2 242193529 + 25643752 25644301 MER41A 554 + 0 554 32431 469 11 16 69 chain 21565 chr2 242193529 + 25653137 25653421 THE1A 353 + 0 293 54420 76 1 11 24 1 0 182 chain 6246 chr2 242193529 + 25660219 25660394 L1MB7 1623 + 1456 1603 80184 22 1 0 13 13 8 19 3 0 14 32 20 4 1 0 6 5 0 34 1 0 7 chain 21237 chr2 242193529 + 25704755 25705048 Tigger1 2417 + 584 879 54836 47 0 1 164 3 0 6 6 9 40 0 1 27 chain 125548 chr2 242193529 + 25705083 25706462 SVA_C 1631 + 24 1626 14618 29 0 8 589 0 40 165 0 175 596 chain 6265 chr2 242193529 + 25707851 25707965 Tigger1 2417 + 2302 2416 80111 43 17 0 11 2 19 41 chain 5253 chr2 242193529 + 25722204 25722281 MADE1 96 + 0 96 84427 37 0 19 40 chain 4741 chr2 242193529 + 25769023 25769076 U2 167 + 0 53 87001 53 chain 13572 chr2 242193529 + 25884234 25884406 MSTA 426 + 0 196 64213 108 0 21 5 0 3 59 chain 13737 chr2 242193529 + 25884726 25884886 L1PA7 6471 + 6307 6467 63963 160 chain 126014 chr2 242193529 + 25915318 25916875 LTR12C 1709 + 0 1709 14555 287 4 0 13 6 7 31 0 43 269 0 119 68 1 0 75 0 2 42 10 0 156 1 0 5 3 1 106 0 4 19 0 1 50 10 11 316 1 0 84 chain 5986 chr2 242193529 + 25969394 25969476 L1PB1 5432 + 5346 5424 81141 24 1 0 23 1 0 11 1 0 14 1 0 6 chain 6762 chr2 242193529 + 26042683 26042766 U6 107 + 9 92 78439 83 chain 19074 chr2 242193529 + 26051465 26051753 AluSc 308 + 0 279 57466 48 18 14 69 13 9 117 2 1 21 chain 23450 chr2 242193529 + 26080931 26081275 THE1B 368 + 0 356 51678 47 0 9 8 9 1 54 1 12 41 5 4 104 7 8 68 chain 5527 chr2 242193529 + 26085551 26085622 MER50 708 + 530 601 83123 71 chain 6110 chr2 242193529 + 26146941 26147014 MSTD 398 + 325 398 80692 73 chain 30573 chr2 242193529 + 26468686 26469063 L1PA5 6144 + 5768 6143 41502 364 3 1 10 chain 36094 chr2 242193529 + 26493548 26494007 LTR71A 459 + 1 456 37343 194 6 0 125 0 1 99 0 1 35 chain 16551 chr2 242193529 + 26640947 26641170 MER30 238 + 0 238 60308 60 1 0 46 5 20 97 0 1 14 chain 3426 chr2 242193529 + 26677108 26677146 MSTC 436 + 368 406 95845 38 chain 84335 chr2 242193529 + 26749864 26750863 LTR5_Hs 974 + 0 966 20748 8 0 4 870 41 4 80 chain 38488 chr2 242193529 + 26762411 26763244 MER4E1 777 + 0 767 35720 279 347 267 87 0 12 107 0 2 13 chain 90253 chr2 242193529 + 26814288 26815587 LTR12C 1709 + 0 1709 19639 220 0 1 117 16 59 67 4 72 114 0 278 143 0 47 90 24 0 16 11 4 67 39 38 42 9 11 235 21 20 34 0 4 30 chain 11501 chr2 242193529 + 26834711 26834954 L1MC2 1988 + 15 239 67744 53 1 0 8 6 0 16 7 0 8 9 0 48 0 1 4 1 0 21 42 46 19 chain 3520 chr2 242193529 + 26873430 26873467 MER20 218 + 46 83 95101 37 chain 31650 chr2 242193529 + 26902620 26903062 MER41A 554 + 0 441 40624 209 26 25 85 3 2 75 0 1 44 chain 6806 chr2 242193529 + 26929531 26929666 MER1B 344 + 231 344 78299 34 42 20 59 chain 3425 chr2 242193529 + 27050781 27050818 tRNA-Tyr-TAC 38 + 0 37 95864 37 chain 6415 chr2 242193529 + 27051213 27051286 tRNA-Ala-GCY 73 + 0 73 79623 73 chain 27778 chr2 242193529 + 27141741 27142429 MER4A 717 + 65 449 45213 57 317 0 55 0 17 88 4 1 33 1 0 133 chain 33061 chr2 242193529 + 27163107 27163844 MER57A1 433 + 1 433 39467 77 1 3 8 308 0 182 6 7 155 chain 6946 chr2 242193529 + 27164199 27164286 MER72 723 + 8 95 77792 72 0 1 5 1 0 9 chain 11410 chr2 242193529 + 27167232 27167377 LTR56 451 + 181 327 67891 114 3 4 28 chain 4946 chr2 242193529 + 27183226 27183288 MSTD 398 + 89 152 85903 17 0 1 45 chain 5452 chr2 242193529 + 27185070 27185143 MER53 195 + 0 73 83452 8 1 0 13 0 1 51 chain 19226 chr2 242193529 + 27195791 27195996 L1PA3long 6157 + 5660 5865 57318 205 chain 138293 chr2 242193529 + 27358783 27360255 SVA_F 1814 + 0 1810 13240 722 0 96 68 0 242 682 chain 3324 chr2 242193529 + 27450917 27451000 MER33 330 + 201 279 96813 18 26 23 6 2 0 31 chain 76191 chr2 242193529 + 27459978 27460946 LTR5_Hs 974 + 0 974 22516 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 15341 chr2 242193529 + 27463426 27463648 MER30 238 + 0 238 61863 24 4 22 61 14 11 104 0 1 15 chain 2746 chr2 242193529 + 27519986 27520164 MER53 195 - 0 195 101995 14 10 0 13 77 104 64 chain 51910 chr2 242193529 + 27529119 27530307 L1MA2 4263 + 3221 4105 28906 65 0 7 35 1 0 170 6 7 29 416 62 62 5 4 134 2 0 5 0 2 4 0 1 34 0 51 63 11 9 93 14 7 4 0 1 35 chain 21000 chr2 242193529 + 27531304 27531701 MSTA 426 + 0 425 55122 123 120 134 39 9 23 106 chain 2939 chr2 242193529 + 27754466 27754503 MIR3 191 + 94 130 100508 20 1 0 16 chain 23599 chr2 242193529 + 27785494 27785775 AluSg7 307 + 12 294 51434 119 1 2 161 chain 5844 chr2 242193529 + 27788891 27789057 L1ME1 1623 + 258 420 81718 48 10 0 8 1 0 5 58 65 36 chain 69328 chr2 242193529 + 27812088 27812867 L1PA5 6144 + 5348 6144 24154 105 0 15 341 0 2 333 chain 42590 chr2 242193529 + 27836374 27836989 L1PA16 3655 + 2472 3085 33008 137 1 0 65 1 0 229 12 14 43 10 9 21 12 10 30 4 5 50 chain 5963 chr2 242193529 + 27852170 27852346 MER3 215 + 8 196 81218 24 0 1 29 88 99 35 chain 105367 chr2 242193529 + 27879647 27881913 L1PREC2 3366 + 1378 3025 17632 219 1 0 157 4 10 12 1 61 51 0 1 124 8 9 269 0 7 93 6 5 28 58 60 103 1 0 101 0 1 38 655 0 25 2 0 28 0 3 23 1 0 44 1 0 4 3 0 13 33 24 13 7 2 15 12 10 20 4 1 11 31 17 26 6 4 15 chain 5730 chr2 242193529 + 27888756 27888867 MER58C 217 + 69 206 82223 42 23 48 42 0 1 4 chain 26691 chr2 242193529 + 27910851 27911226 THE1C 375 + 0 375 46699 125 13 14 211 11 10 15 chain 64163 chr2 242193529 + 27936250 27936958 L1PA3long 6157 + 5449 6157 25378 708 chain 110947 chr2 242193529 + 27967529 27968961 THE1B-int 1605 + 0 1605 16946 107 0 3 243 8 9 68 1 26 57 21 22 715 0 124 117 5 24 90 chain 26501 chr2 242193529 + 27968961 27969318 THE1B 368 + 0 368 46977 44 0 15 107 7 6 118 3 0 16 1 0 4 0 1 57 chain 58898 chr2 242193529 + 28026003 28026701 L1PA7 6471 + 5731 6429 26694 576 1 5 7 4 0 110 chain 104749 chr2 242193529 + 28104033 28105192 L1PA5 6144 + 4974 6137 17723 301 0 4 858 chain 27511 chr2 242193529 + 28113991 28114333 L1PA7 6471 + 4278 4621 45566 282 0 1 10 1 0 7 0 1 42 chain 119408 chr2 242193529 + 28329474 28330915 L1PA10 4194 + 2729 4161 15627 72 2 0 821 0 1 451 1 11 8 14 0 23 3 0 34 2 1 10 chain 64651 chr2 242193529 + 28371551 28372294 L1PA5 6144 + 5396 6138 25279 730 1 0 12 chain 4303 chr2 242193529 + 28427363 28427616 L1MB5 1630 + 1369 1619 89480 23 1 0 15 165 165 28 2 1 13 1 0 5 chain 112649 chr2 242193529 + 28472514 28474001 LTR12C 1709 + 0 1709 16728 38 47 46 127 1 3 55 1 26 43 0 43 81 1 0 4 1 0 4 5 4 176 0 119 68 1 0 234 0 47 28 1 0 72 17 10 399 1 0 82 chain 3071 chr2 242193529 + 28711556 28711625 MADE1 96 - 0 96 99086 29 2 29 38 chain 23295 chr2 242193529 + 28743127 28743516 L1PA14 3548 + 3087 3456 51939 26 5 1 17 2 0 6 1 0 4 2 0 80 1 0 106 5 4 11 11 7 30 4 2 10 7 5 18 1 0 42 chain 32186 chr2 242193529 + 29028914 29029467 L1PB1 5432 + 4771 5277 40200 67 0 1 130 9 18 85 4 0 31 71 28 6 1 0 9 1 0 10 6 2 9 2 0 53 2 1 15 1 0 41 chain 54523 chr2 242193529 + 29055547 29056206 PABL_A 660 + 0 660 28039 143 0 1 374 0 1 54 1 0 87 chain 261061 chr2 242193529 + 29092095 29094967 L1PA3long 6157 + 3277 6157 7939 118 0 1 640 0 3 1269 1 5 844 chain 32367 chr2 242193529 + 29302808 29303378 L1PA17 2846 + 2144 2693 40065 37 0 1 175 0 1 4 5 9 43 9 10 78 5 4 10 42 17 51 36 33 15 1 0 5 0 2 10 1 0 37 0 1 6 chain 35277 chr2 242193529 + 29352806 29353248 LTR8 732 + 0 447 37842 61 0 4 308 0 1 73 chain 33307 chr2 242193529 + 29375857 29376325 LTR19A 502 + 0 502 39251 178 0 37 81 0 1 133 45 41 31 chain 6096 chr2 242193529 + 29490420 29490493 MER5A 189 + 0 73 80747 73 chain 5823 chr2 242193529 + 29503910 29503989 MADE1 96 + 1 96 81808 30 1 17 48 chain 206623 chr2 242193529 + 29512204 29514455 L1PA3long 6157 + 3701 5952 9482 714 1 0 324 0 1 1212 chain 44972 chr2 242193529 + 29554658 29555215 MER41A 554 + 0 554 31598 171 6 1 213 0 1 107 0 1 60 chain 21205 chr2 242193529 + 29571268 29571591 THE1D 372 + 0 332 54877 76 21 3 49 0 4 34 21 44 122 chain 26727 chr2 242193529 + 29578027 29578377 THE1B 368 + 0 367 46646 40 0 15 52 5 6 59 2 3 192 chain 13317 chr2 242193529 + 29626651 29626835 MLT1A 405 + 219 405 64592 133 11 13 40 chain 58249 chr2 242193529 + 29643745 29644396 L1PA4 6152 + 5488 6139 26883 651 chain 77741 chr2 242193529 + 29695560 29696541 L1PA7 6471 + 5507 6470 22153 114 2 0 178 2 9 31 7 1 101 20 0 487 0 1 27 0 2 12 chain 7388 chr2 242193529 + 29696977 29697070 L1PA8 5853 + 5760 5853 76423 93 chain 40976 chr2 242193529 + 29791168 29791633 L1PA7 6471 + 5998 6465 33985 203 0 1 119 0 1 143 chain 124803 chr2 242193529 + 29823326 29824908 THE1B-int 1605 + 0 1605 14735 206 0 1 7 2 1 202 2 1 10 5 31 190 6 0 61 1 2 527 3 5 313 0 1 47 chain 27109 chr2 242193529 + 29824908 29825264 THE1B 368 + 0 368 46113 44 1 16 109 1 0 28 2 0 171 chain 130614 chr2 242193529 + 29827684 29829141 L1PA4 6152 + 4507 5967 13966 724 1 2 71 0 4 173 2 0 486 chain 7841 chr2 242193529 + 29852715 29852807 MLT1A0 366 + 51 143 75276 92 chain 51788 chr2 242193529 + 29926782 29927389 L1PA6 6164 + 5539 6147 28942 471 0 1 136 chain 27780 chr2 242193529 + 29938550 29938952 MLT2A1 477 + 0 398 45211 36 18 19 37 1 0 50 0 1 26 0 4 84 0 1 126 11 1 13 chain 7354 chr2 242193529 + 29944595 29945143 MER66C 541 + 0 261 76517 49 1 0 21 436 149 36 0 1 5 chain 16106 chr2 242193529 + 29981731 29981951 MER30 238 + 0 238 60886 90 0 3 5 1 0 9 4 21 32 1 0 78 chain 169314 chr2 242193529 + 30000591 30002471 L1PA4 6152 + 4251 6143 11137 992 0 4 57 0 4 514 0 3 213 0 1 104 chain 5917 chr2 242193529 + 30078696 30078818 LTR50 688 + 98 223 81411 40 39 42 43 chain 4692 chr2 242193529 + 30087433 30087568 LTR16C 481 + 301 438 87312 37 64 66 34 chain 25966 chr2 242193529 + 30188370 30188755 MER51B 395 + 0 383 47771 34 18 5 136 4 12 58 1 0 88 1 5 45 chain 40743 chr2 242193529 + 30189592 30190121 LTR10G 522 + 0 522 34126 40 1 0 153 2 1 40 1 0 88 3 1 29 0 1 96 3 0 73 chain 3626 chr2 242193529 + 30198835 30198875 MLT1D 503 + 399 439 94206 40 chain 22803 chr2 242193529 + 30252058 30252380 THE1C 375 + 0 320 52656 115 19 16 51 1 2 136 chain 19023 chr2 242193529 + 30261292 30261543 L1PA8 5853 + 5596 5843 57526 12 2 0 32 0 2 36 2 1 14 1 0 47 2 1 19 1 0 83 chain 64255 chr2 242193529 + 30268893 30269666 LTR17 781 + 0 781 25359 327 1 0 35 6 14 397 0 1 7 chain 26153 chr2 242193529 + 30331508 30331873 THE1B 368 + 0 368 47493 169 1 0 31 0 3 11 0 4 6 7 6 12 1 0 64 7 6 56 chain 4434 chr2 242193529 + 30392295 30392369 L1MB2 1706 + 1606 1683 88703 10 1 0 10 6 10 47 chain 6150 chr2 242193529 + 30432360 30432440 MADE1 96 + 0 96 80535 29 0 16 51 chain 9288 chr2 242193529 + 30444945 30445098 MER1A 529 + 376 524 71934 68 30 25 55 chain 36219 chr2 242193529 + 30513601 30514051 MER4A1 472 + 0 472 37257 14 0 2 209 0 21 34 1 0 192 chain 54369 chr2 242193529 + 30518532 30519160 HERV17-int 4347 + 2267 2906 28095 22 0 10 257 0 1 349 chain 43829 chr2 242193529 + 30520886 30521425 MER41A 554 + 0 539 32230 539 chain 28689 chr2 242193529 + 30553534 30553833 AluYb8 318 + 1 300 43819 299 chain 88607 chr2 242193529 + 30606040 30607162 L1PA8A 6298 + 4630 5757 19918 197 1 3 663 0 4 6 2 1 253 chain 33986 chr2 242193529 + 30608328 30608805 Tigger3b 1229 + 719 1207 38716 47 1 4 41 1 0 51 0 1 127 1 11 108 19 17 81 chain 155649 chr2 242193529 + 30623401 30625409 L1PBa 3878 + 801 2853 12027 24 0 6 15 0 3 83 0 2 50 16 11 64 4 7 29 0 2 190 4 0 94 0 4 38 2 0 115 0 1 43 0 1 31 5 0 8 0 1 203 1 2 221 0 1 231 0 5 155 3 20 126 0 4 43 0 4 28 0 4 36 0 1 86 0 1 4 1 0 55 chain 75286 chr2 242193529 + 30697087 30698085 LTR13 1007 + 0 1007 22773 73 2 0 284 7 8 16 4 5 242 2 1 68 0 1 63 0 9 35 11 13 143 0 2 6 2 0 6 3 1 31 chain 8047 chr2 242193529 + 30749157 30749278 Tigger4a 237 + 0 122 74759 17 8 0 8 3 12 85 chain 434846 chr2 242193529 + 30814942 30819826 L1PA4 6152 + 1256 6151 4668 1549 0 1 444 0 4 1005 0 3 1042 0 4 694 1 0 149 chain 186959 chr2 242193529 + 30831290 30833962 MER57-int 2662 + 40 2643 10254 30 44 29 9 1 0 75 0 5 75 0 1 49 2 0 63 0 10 307 11 7 62 13 14 17 0 2 24 2 0 22 0 4 26 4 5 70 18 8 49 4 1 79 0 1 7 4 0 224 0 3 519 11 0 4 6 0 13 0 2 49 8 4 401 0 2 21 1 0 91 18 12 68 35 17 22 1 0 5 1 0 10 4 1 24 1 0 6 12 7 29 3 0 18 chain 468242 chr2 242193529 + 30848650 30854218 L1PA5 6144 + 0 6131 3900 91 6 755 170 0 1 921 9 4 39 0 7 359 0 2 556 211 10 243 1 0 91 1 0 1031 0 10 1521 0 3 77 1 0 240 chain 52858 chr2 242193529 + 30857342 30858224 L1MA3 4352 + 3427 4303 28618 151 37 38 172 11 24 26 2 0 13 0 4 233 50 31 47 5 8 10 3 4 7 1 0 19 13 15 6 4 0 25 2 0 22 1 0 6 1 0 15 chain 29247 chr2 242193529 + 30868486 30868798 AluYa5 310 + 0 310 42970 97 2 0 213 chain 61928 chr2 242193529 + 30875362 30876157 L1P3 4156 + 3303 4102 25878 339 0 2 347 9 11 100 chain 550604 chr2 242193529 + 30904198 30910223 L1PA2 6032 + 1 6032 699 73 0 1 182 1 0 1820 0 4 117 1 0 1941 0 3 1890 chain 55878 chr2 242193529 + 30915746 30916410 PABL_B 668 + 0 667 27598 52 0 2 99 0 1 127 1 0 7 0 1 378 chain 46211 chr2 242193529 + 30952275 30952773 L1PA2 6032 + 5534 6032 30957 498 chain 12928 chr2 242193529 + 31070976 31071241 L1PB1 5432 + 5181 5423 65207 39 2 1 15 1 0 32 13 12 16 1 0 6 17 7 18 2 0 4 1 0 15 2 0 24 1 0 21 1 0 11 1 0 12 1 0 9 chain 41862 chr2 242193529 + 31091766 31092326 MLT2A2 560 + 0 560 33451 14 10 6 66 0 1 319 0 11 102 8 0 41 chain 32661 chr2 242193529 + 31093994 31094438 LTR7B 505 + 0 489 39795 108 0 10 57 0 38 12 0 25 6 1 0 24 29 0 82 1 0 25 0 3 99 chain 44298 chr2 242193529 + 31113657 31114213 LTR19B 566 + 0 566 31952 51 0 1 26 1 0 11 0 5 198 1 5 216 10 11 42 chain 149818 chr2 242193529 + 31182114 31183755 L1PA3long 6157 + 3924 5565 12362 1641 chain 35779 chr2 242193529 + 31198033 31198482 MER4A1 472 + 0 472 37546 161 0 1 63 0 21 28 7 6 65 0 2 125 chain 44184 chr2 242193529 + 31282218 31282772 MER41A 554 + 0 554 32021 533 0 1 4 2 1 15 chain 47513 chr2 242193529 + 31283462 31284018 LTR10F 562 + 0 562 30473 149 0 1 57 0 1 20 0 3 5 0 1 325 chain 20587 chr2 242193529 + 31284380 31284705 MLT1A0 366 + 8 354 55662 39 0 1 104 0 1 38 52 71 92 chain 55102 chr2 242193529 + 31284713 31285428 LTR17 781 + 0 753 27838 59 1 0 97 1 0 171 1 0 135 0 1 15 10 6 212 1 45 12 chain 21079 chr2 242193529 + 31358021 31358260 L1P1 4361 + 2561 2800 55028 239 chain 22531 chr2 242193529 + 31408687 31408997 L1MA2 4263 + 3810 4110 53070 148 1 0 3 1 0 97 7 0 47 1 0 5 chain 23132 chr2 242193529 + 31412384 31412642 L1PA5 6144 + 5886 6144 52170 258 chain 33910 chr2 242193529 + 31436612 31438964 L1PA3long 6157 + 3813 6154 38780 1376 13 0 800 0 2 163 chain 28932 chr2 242193529 + 31448911 31449265 THE1A 353 + 0 353 43432 109 2 1 243 chain 24877 chr2 242193529 + 31468147 31468498 THE1B 368 + 7 368 49479 162 1 0 29 14 16 18 10 18 26 3 4 88 chain 501904 chr2 242193529 + 31489093 31495795 L1PA6 6164 + 0 6162 3061 160 0 1 195 0 1 92 8 0 120 1 0 230 1 18 622 9 7 10 0 1 265 1 0 6 1 0 197 1 0 409 1 0 594 0 1 120 0 1 126 3 4 17 580 0 146 0 1 350 1 0 3 1 0 309 0 85 815 52 0 30 0 1 16 0 1 1031 0 2 6 2 0 14 0 2 140 4 0 13 chain 8788 chr2 242193529 + 31492290 31492397 L1PA6 6164 - 470 577 73016 107 chain 309714 chr2 242193529 + 31496364 31500000 L1P1 4361 + 1 3693 6618 181 0 55 177 1 2 158 1 0 118 7 0 149 3 4 380 0 1 14 12 11 1404 0 1 32 0 5 509 0 1 490 chain 220811 chr2 242193529 + 31500000 31502450 L1PA3long 6157 + 3705 6155 9019 2305 6 0 7 9 15 123 chain 126091 chr2 242193529 + 31518857 31520417 THE1A-int 1579 + 0 1577 14537 56 0 6 267 0 7 94 1 0 5 0 1 477 0 2 70 6 7 485 0 1 99 chain 25555 chr2 242193529 + 31520419 31520746 THE1A 353 + 0 353 48390 109 2 1 92 1 0 5 6 34 112 chain 105315 chr2 242193529 + 31575998 31577158 L1HS 6032 + 4870 6030 17644 1160 chain 63004 chr2 242193529 + 31587051 31587912 L1PA8 5853 + 5003 5853 25624 5 1 0 147 15 4 235 0 2 33 6 10 82 0 1 42 1 0 43 2 0 64 31 29 40 2 1 19 1 0 7 0 1 85 chain 87279 chr2 242193529 + 31590462 31591461 L1PA4 6152 + 4522 5515 20176 390 6 0 603 chain 31997 chr2 242193529 + 31592921 31593270 L1PA3long 6157 + 5808 6157 40345 349 chain 178720 chr2 242193529 + 31600995 31603476 L1PA11 4918 + 2089 4578 10652 158 0 1 34 0 3 34 2 1 19 4 7 53 0 1 67 0 1 86 0 1 161 0 5 121 4 5 75 0 2 45 0 1 251 14 10 73 0 1 27 1 0 143 0 5 409 0 9 8 18 0 2 0 1 16 1 0 5 0 1 119 1 0 5 1 2 267 0 1 4 0 11 53 18 13 68 2 0 14 2 1 19 35 31 15 1 0 13 2 0 11 chain 118879 chr2 242193529 + 31615172 31616841 THE1B-int 1605 + 0 1597 15729 76 0 4 323 0 1 28 0 24 9 0 2 55 1 0 105 30 29 224 100 0 116 1 0 5 18 19 69 0 1 254 1 0 109 6 4 45 0 1 94 chain 5503 chr2 242193529 + 31620538 31620603 Tigger1 2417 + 2339 2404 83223 65 chain 15831 chr2 242193529 + 31629159 31629347 LTR17 781 + 540 728 61244 188 chain 180411 chr2 242193529 + 31631211 31633437 HERV17-int 4347 + 21 4347 10568 6 1 0 51 1 0 34 2 0 27 1 0 125 1 2 4 0 1 27 1 0 29 0 430 589 3 1 117 7 8 58 5 6 4 1 0 94 0 1 425 0 1672 169 4 3 36 3 8 13 2 0 386 chain 25367 chr2 242193529 + 31633750 31634158 LTR17 781 + 4 326 48673 137 73 0 70 16 3 46 0 1 7 1 0 58 chain 3080 chr2 242193529 + 31660465 31660516 L1MC1 2226 + 2129 2181 98980 6 1 0 14 1 3 29 chain 58620 chr2 242193529 + 31663631 31664285 L1PA4 6152 + 5317 5971 26782 654 chain 37276 chr2 242193529 + 31733389 31733803 L1PA5 6144 + 5725 6139 36568 414 chain 4519 chr2 242193529 + 31734688 31734739 MER5A1 166 + 26 77 88216 51 chain 2660 chr2 242193529 + 31738700 31738786 MIRb 242 + 14 101 102663 24 43 44 19 chain 424972 chr2 242193529 + 31748531 31753473 L1PA5 6144 + 0 6144 4814 1003 0 1 230 0 1 436 0 2 20 0 1200 19 0 1 60 0 1 253 18 15 519 0 1 1106 0 1 33 1 0 10 7 1 358 0 4 418 5 5 446 chain 20568 chr2 242193529 + 31761869 31762126 MSTA 426 + 169 426 55683 257 chain 41892 chr2 242193529 + 31774920 31775463 MLT2A2 560 + 5 560 33425 199 0 1 192 5 16 86 1 0 6 1 0 6 4 6 43 chain 69862 chr2 242193529 + 31783080 31784146 MER11A 1151 + 0 1151 24027 79 0 8 103 11 10 30 16 20 39 11 9 110 0 1 123 1 13 124 19 22 11 3 4 37 0 4 32 11 12 4 1 0 19 0 1 19 5 62 108 11 10 71 7 6 21 1 0 39 chain 119452 chr2 242193529 + 31789475 31791821 L1MA3 4352 + 2340 4215 15621 165 12 7 77 2 0 54 4 0 81 0 1 129 2 1 197 329 18 101 2 1 92 20 0 8 8 30 100 1 2 79 177 37 33 0 1 4 1 0 270 0 2 95 26 32 36 0 4 79 117 95 8 1 0 36 chain 529366 chr2 242193529 + 31795337 31801425 L1PA5 6144 + 4 6132 1866 865 0 1 533 6 7 551 0 9 59 0 1 413 10 11 578 5 6 566 1 0 40 11 19 16 2 0 1008 0 1 4 1 0 523 0 17 65 0 4 831 chain 112609 chr2 242193529 + 31803543 31804882 LTR12C 1709 + 7 1709 16733 292 0 16 126 7 70 101 0 1 37 0 278 184 1 0 4 4 2 106 0 4 244 0 4 233 chain 45386 chr2 242193529 + 31807126 31807640 L1PA5 6144 + 5612 6126 31370 514 chain 81125 chr2 242193529 + 31825343 31826247 L1PA4 6152 + 4190 5095 21406 357 0 1 547 chain 28696 chr2 242193529 + 31842372 31842679 L1PA3long 6157 + 5474 5781 43807 307 chain 26781 chr2 242193529 + 31843388 31843745 L1PA7 6471 + 6110 6468 46568 113 1 4 86 9 10 130 4 1 14 chain 137798 chr2 242193529 + 31899027 31900693 L1PA7 6471 + 4801 6470 13280 70 9 10 431 0 1 229 1 2 77 0 3 618 13 12 179 0 1 27 3 0 9 chain 6601 chr2 242193529 + 31986001 31986082 HY1 111 + 16 97 78969 81 chain 19544 chr2 242193529 + 32051189 32051437 AluSg4 309 + 28 274 56965 103 2 0 122 0 1 4 2 1 15 chain 45196 chr2 242193529 + 32200346 32200841 SVA_D 2077 + 1555 2070 31476 368 0 20 127 chain 11468 chr2 242193529 + 32247838 32247976 L1PB4 2604 + 2410 2548 67800 138 chain 17410 chr2 242193529 + 32249269 32249552 MER49 923 + 619 899 59336 144 6 5 13 0 3 23 29 31 44 8 1 16 chain 6465 chr2 242193529 + 32272411 32272504 MLT1A0 366 + 271 366 79467 32 9 11 52 chain 20404 chr2 242193529 + 32296234 32296494 AluSg7 307 + 46 302 55879 17 4 1 67 0 1 162 2 0 8 chain 3147 chr2 242193529 + 32321801 32321834 LTR32 486 + 32 65 98389 33 chain 11889 chr2 242193529 + 32528535 32528764 Tigger4 2445 + 2121 2360 67037 58 0 1 5 1 0 13 0 2 15 1 0 20 1 0 22 30 28 14 10 22 39 chain 24042 chr2 242193529 + 32537190 32537462 L1P1 4361 + 2536 2831 50742 106 0 23 166 chain 22863 chr2 242193529 + 32660341 32660601 L1PA7 6471 + 6054 6329 52554 238 1 16 21 chain 4736 chr2 242193529 + 32693317 32693446 MER5A 189 + 18 146 87049 49 63 62 17 chain 25794 chr2 242193529 + 32844266 32844614 THE1B 368 + 8 368 48023 36 0 15 110 1 0 31 6 4 164 chain 119285 chr2 242193529 + 32844614 32846281 THE1B-int 1605 + 0 1600 15643 56 3 2 134 0 1 148 0 13 8 131 0 68 0 25 72 1 0 78 0 1 98 5 6 98 0 2 231 3 21 429 0 5 104 chain 26183 chr2 242193529 + 32846286 32846642 THE1B 368 + 0 368 47456 43 1 16 110 1 0 11 0 1 4 2 1 12 2 0 170 chain 3912 chr2 242193529 + 32858515 32858560 Charlie1a 1436 + 98 143 92036 45 chain 74918 chr2 242193529 + 32868130 32869011 SVA_D 2077 + 378 1303 22864 463 40 0 48 0 83 14 2 0 48 1 4 265 chain 11433 chr2 242193529 + 32869013 32869160 SVA_F 1814 + 846 1007 37141 9 1 0 32 0 1 59 0 15 39 1 0 6 chain 1513 chr2 242193529 + 32869160 32869186 SVA_F 1814 + 762 789 34341 5 0 2 6 1 0 14 chain 90757 chr2 242193529 + 32869186 32870552 SVA_F 1814 + 672 1814 19542 26 0 40 29 49 0 8 103 0 13 36 39 29 6 5 19 0 1 40 129 0 26 0 15 39 1 0 10 1 0 116 0 1 686 chain 2852 chr2 242193529 + 32869241 32869290 SVA_F 1814 + 847 896 34341 8 1 0 25 0 1 15 chain 5530 chr2 242193529 + 32869298 32869393 SVA_F 1814 + 904 1011 34341 33 1 0 10 1 15 39 1 0 10 chain 2800 chr2 242193529 + 32869414 32869450 SVA_F 1814 + 1207 1243 37141 36 chain 2156 chr2 242193529 + 32869544 32869567 SVA_F 1814 + 1161 1183 60722 16 1 0 6 chain 5879 chr2 242193529 + 32869572 32869673 SVA_F 1814 + 1011 1112 34341 101 chain 62018 chr2 242193529 + 32879743 32880448 L1PA5 6144 + 5432 6139 25864 100 0 1 461 0 1 144 chain 25203 chr2 242193529 + 32944269 32944628 THE1C 375 + 0 375 48943 49 0 11 81 1 5 34 0 1 6 1 0 5 1 0 45 1 0 104 5 8 26 chain 21421 chr2 242193529 + 32964790 32965064 AluSc 308 + 30 304 54610 56 0 1 185 8 7 25 chain 115038 chr2 242193529 + 32981957 32983522 THE1B-int 1605 + 0 1605 16386 113 0 3 153 11 12 116 9 73 109 40 4 76 3 12 81 0 1 16 1 0 7 1 2 485 0 2 23 15 12 31 5 4 270 chain 13806 chr2 242193529 + 33067499 33067748 MER2 342 + 14 270 63877 22 43 48 25 2 0 5 2 6 150 chain 3507 chr2 242193529 + 33122093 33122131 MLT1H2 457 + 80 118 95190 38 chain 49224 chr2 242193529 + 33151978 33152611 L1PB1 5432 + 4377 5009 29856 232 14 12 84 0 2 295 1 0 7 chain 560593 chr2 242193529 + 33170021 33176165 L1PA3long 6157 + 6 6157 155 520 4 0 560 0 3 356 0 1 761 0 4 3099 0 4 510 1 0 333 chain 202373 chr2 242193529 + 33199403 33201638 L1PA3long 6157 + 3923 6157 9619 1975 1 0 259 chain 141265 chr2 242193529 + 33234404 33236061 L1PA7 6471 + 4641 6465 13003 313 0 1 124 3 175 367 2 0 79 0 2 118 3 0 632 0 1 5 4 0 7 chain 30747 chr2 242193529 + 33255288 33255619 L1PA2 6032 + 5325 5656 41355 331 chain 3735 chr2 242193529 + 33324333 33324377 MER44A 345 + 187 232 93362 5 0 1 39 chain 7271 chr2 242193529 + 33368232 33368340 L1P5 443 + 206 321 76760 71 5 13 9 1 0 22 chain 2524 chr2 242193529 + 33464423 33464474 Tigger1 2417 + 187 231 103547 13 13 6 25 chain 2970 chr2 242193529 + 33538115 33538217 MERX 374 + 197 310 100193 14 3 13 17 43 44 25 chain 24968 chr2 242193529 + 33539719 33540015 AluYc 301 + 0 299 49331 39 0 1 80 0 2 177 chain 28879 chr2 242193529 + 33548079 33548386 AluYk11 308 + 0 307 43517 307 chain 18947 chr2 242193529 + 33594277 33594522 L1PA8A 6298 + 6045 6291 57599 42 1 2 202 chain 41429 chr2 242193529 + 33609879 33610369 MER9a2 513 + 0 513 33716 24 0 23 466 chain 66197 chr2 242193529 + 33612300 33614669 HUERS-P1-int 2401 + 215 2139 24911 17 17 11 34 4 0 7 68 47 15 40 12 14 1 0 13 1 0 42 22 18 16 7 1 11 1 0 8 2 0 14 40 19 16 1 0 5 0 1 4 30 17 15 27 24 87 62 40 29 2 0 79 0 1 5 2 0 121 0 4 46 1 0 7 13 10 90 10 8 10 27 30 55 1 2 19 2 0 21 23 15 50 1 0 24 20 0 23 99 44 11 0 4 13 2 0 9 281 260 4 1 0 7 3 0 9 5 4 18 7 6 14 249 123 17 29 0 7 1 0 17 1 0 35 1 0 11 57 28 26 1 0 5 1 0 6 35 26 48 2 0 15 chain 35746 chr2 242193529 + 33656448 33656850 L1PA3long 6157 + 5744 6149 37568 203 0 3 199 chain 37440 chr2 242193529 + 33657421 33657894 LTR17 781 + 255 757 36449 72 1 0 157 0 1 4 1 0 131 0 4 9 0 1 31 0 2 46 1 24 20 chain 330649 chr2 242193529 + 33659657 33663834 HERV17-int 4347 + 13 4347 6202 14 1 0 51 1 0 33 3 1 26 2 1 188 0 430 194 0 28 270 4 13 24 0 2 181 0 2 466 0 5 353 6 0 435 311 0 416 0 1 1089 1 3 108 chain 24833 chr2 242193529 + 33664146 33664455 LTR17 781 + 0 326 49536 203 3 4 42 1 17 60 chain 25188 chr2 242193529 + 33677533 33677920 Tigger3b 1229 + 782 1181 48968 74 8 12 66 38 41 162 0 5 39 chain 31304 chr2 242193529 + 33713770 33714164 L1PA7 6471 + 6077 6470 40892 208 1 2 20 2 0 6 0 1 144 1 0 12 chain 34324 chr2 242193529 + 33728723 33729225 MER41A 554 + 21 479 38476 66 0 1 4 0 1 130 3 5 181 0 4 37 53 1 28 chain 8751 chr2 242193529 + 33729840 33729947 MER41A 554 + 171 280 73102 54 0 2 53 chain 90585 chr2 242193529 + 33747321 33748744 L1PA7 6471 + 5303 6429 19582 141 0 1 169 0 3 76 1 0 7 4 5 98 299 2 113 6 0 143 1 2 73 0 1 173 1 0 65 0 1 53 chain 3656 chr2 242193529 + 33776141 33776420 LTR12C 1709 + 896 1647 93948 21 0 37 28 208 643 22 chain 11036 chr2 242193529 + 33797553 33797792 LTR12 884 + 162 378 68499 27 41 0 86 49 67 36 chain 26469 chr2 242193529 + 33819518 33819820 AluY 311 + 7 311 47026 82 0 1 36 0 1 184 chain 25871 chr2 242193529 + 33842756 33843093 THE1C 375 + 0 336 47911 186 10 9 141 chain 20734 chr2 242193529 + 33856130 33856515 THE1B 368 + 0 368 55448 15 2 0 32 0 1 48 47 39 22 0 1 11 31 24 21 14 13 66 1 0 75 chain 3209 chr2 242193529 + 33890944 33890985 LTR12F 595 + 185 235 97809 21 0 9 20 chain 18488 chr2 242193529 + 33895076 33895298 MER41A 554 + 165 388 58118 153 0 1 69 chain 5572 chr2 242193529 + 33897138 33897284 L1MA8 2339 + 2066 2186 82920 20 62 36 64 chain 26911 chr2 242193529 + 33936340 33936722 THE1C 375 + 0 375 46394 106 1 3 64 13 7 5 2 0 165 1 0 25 chain 84388 chr2 242193529 + 33976229 33977275 MER11C 1089 + 0 1074 20736 55 0 3 139 0 1 44 0 1 24 0 3 49 1 18 249 12 13 327 1 3 145 chain 72552 chr2 242193529 + 33988748 33989658 L1PA6 6164 + 5216 6156 23422 80 0 4 12 8 21 59 6 5 209 0 2 99 0 4 291 1 9 145 chain 26662 chr2 242193529 + 34031843 34032144 L1PA5 6144 + 5837 6138 46739 301 chain 10124 chr2 242193529 + 34059130 34059255 MER85 139 + 4 139 70158 85 0 10 40 chain 4335 chr2 242193529 + 34070828 34070881 MER1B 344 + 291 344 89266 53 chain 46132 chr2 242193529 + 34150857 34151484 L1PA8 5853 + 5229 5847 30995 335 1 0 36 24 22 56 18 15 47 2 1 19 2 0 87 chain 47964 chr2 242193529 + 34184083 34184642 L1PA7 6471 + 5887 6451 30310 183 0 3 367 0 2 9 chain 26117 chr2 242193529 + 34199003 34199365 THE1B 368 + 0 368 47541 169 1 0 28 1 0 4 34 42 125 chain 5683 chr2 242193529 + 34203440 34203533 LTR33A_ 513 + 367 474 82421 15 12 26 66 chain 15510 chr2 242193529 + 34217775 34217954 L1PA7 6471 + 6280 6459 61634 179 chain 48240 chr2 242193529 + 34221217 34221799 L1PA7 6471 + 5887 6467 30200 409 19 21 5 1 0 132 3 0 13 chain 22791 chr2 242193529 + 34236382 34236719 THE1A 353 + 0 330 52686 47 0 1 46 1 0 17 0 2 6 8 6 126 3 4 16 11 3 56 chain 125422 chr2 242193529 + 34236741 34238302 THE1A-int 1579 + 0 1566 14642 650 0 1 4 8 10 21 2 0 280 2 1 471 0 5 123 chain 153737 chr2 242193529 + 34262584 34264656 L1PBa1 4058 + 1710 4002 12124 14 0 234 103 7 10 142 0 4 250 10 5 183 0 5 62 0 3 301 1 3 239 19 19 148 1 0 117 1 0 114 1 0 29 7 6 137 0 3 6 9 4 22 14 5 17 2 0 19 2 1 4 1 0 4 3 0 18 15 13 7 0 2 9 2 0 10 1 0 16 1 0 4 chain 76927 chr2 242193529 + 34299807 34300728 L1PA6 6164 + 5218 6162 22339 96 1 5 514 0 1 248 0 18 62 chain 67018 chr2 242193529 + 34309407 34310147 L1PA3long 6157 + 5401 6157 24700 622 0 14 113 0 2 5 chain 18844 chr2 242193529 + 34322301 34322528 L1PA7 6471 + 6229 6456 57722 85 3 0 5 0 3 134 chain 9795 chr2 242193529 + 34363562 34363684 LTR24B 570 + 0 125 70835 88 0 3 34 chain 5428 chr2 242193529 + 34403673 34403748 MADE1 96 + 0 91 83567 32 5 21 38 chain 3376 chr2 242193529 + 34404712 34404754 MADE1 96 + 8 49 96332 37 1 0 4 chain 59421 chr2 242193529 + 34432135 34432886 LTR12 884 + 0 884 26528 14 6 7 53 0 132 172 2 0 65 6 5 261 1 0 131 1 5 39 chain 522837 chr2 242193529 + 34466220 34472636 L1PA7 6471 + 0 6449 2144 15 0 1 215 24 32 137 0 4 152 6 1 265 0 2 322 0 2 52 4 5 4 1 0 93 0 3 126 0 2 5 14 12 111 1 0 573 0 2 39 0 1 464 0 1 365 5 6 538 0 4 58 1 0 212 6 5 180 2 1 407 8 9 29 0 1 4 1 0 205 0 8 121 0 1 725 2 3 106 1 3 70 0 1 612 1 0 134 chain 116421 chr2 242193529 + 34494109 34495502 LTR12C 1709 + 0 1709 16152 102 7 6 201 0 1 4 1 0 478 1 319 6 2 0 107 0 4 148 3 0 333 chain 434563 chr2 242193529 + 34505497 34511393 L1PA5 6144 + 909 6137 4675 45 25 0 180 2 1 9 34 25 542 1 2 318 0 1 402 0 1 368 8 9 341 0 5 15 638 0 50 21 14 2057 1 0 14 0 1 375 5 5 116 0 1 178 0 2 151 chain 53003 chr2 242193529 + 34507796 34508423 L1PA5 6144 + 5517 6144 28577 465 7 6 6 0 1 149 chain 36258 chr2 242193529 + 34521620 34522039 L1PA6 6164 + 5737 6156 37237 419 chain 90620 chr2 242193529 + 34575545 34576511 L1HS 6032 + 5066 6032 19570 966 chain 45829 chr2 242193529 + 34594721 34595215 L1PA2 6032 + 5537 6031 31143 494 chain 18920 chr2 242193529 + 34611852 34612129 L1PB 1623 + 319 591 57623 77 1 0 14 6 0 47 9 12 18 1 0 104 chain 434756 chr2 242193529 + 34635311 34640354 L1PA4 6152 + 0 5029 4670 207 1 5 161 13 14 189 1 0 251 23 6 159 2 0 762 0 1 283 1 2 654 0 3 2111 3 0 36 1 0 185 chain 229143 chr2 242193529 + 34653392 34656042 L1PA5 6144 + 3410 6086 8772 272 1 0 476 1 0 186 1 5 807 1 4 137 0 4 509 0 1 6 0 15 183 0 1 70 chain 9774 chr2 242193529 + 34682239 34682345 L1PA2 6032 + 5926 6032 70872 106 chain 21292 chr2 242193529 + 34694557 34694886 LTR7 482 + 24 476 54774 45 6 95 60 8 40 42 1 2 111 13 14 43 chain 228001 chr2 242193529 + 34694981 34702389 HERVH-int 3825 + 490 3825 8808 30 3 210 48 0 1 551 8 22 29 0 1 49 9 0 24 0 2 13 1 0 102 5 0 209 3 0 222 5 9 74 4 9 256 0 1 246 4497 0 158 3 0 362 2 212 495 chain 16179 chr2 242193529 + 34702573 34702821 LTR7 482 + 187 470 60778 37 0 1 28 11 43 10 1 2 111 13 14 37 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242193529 + 38716714 38716860 FAM 185 + 17 164 68187 125 1 2 20 chain 36182 chr2 242193529 + 38776678 38777499 MER41C 542 + 0 535 37286 49 0 1 80 323 12 165 14 35 18 4 7 168 chain 19293 chr2 242193529 + 38786655 38786896 AluSc 308 + 0 240 57247 42 2 1 197 chain 28738 chr2 242193529 + 39106308 39106618 AluYa5 310 + 0 309 43729 132 1 0 177 chain 6183 chr2 242193529 + 39137660 39137736 Tigger2b_Pri 1066 + 826 902 80412 76 chain 4682 chr2 242193529 + 39160342 39160408 L1MA8 2339 + 2119 2186 87369 38 2 3 26 chain 20408 chr2 242193529 + 39186985 39187338 THE1D 372 + 0 372 55874 46 19 30 21 7 8 62 26 28 41 1 7 90 5 4 35 chain 354571 chr2 242193529 + 39196906 39201943 L1PB1 5432 + 381 5392 5859 60 27 26 77 0 1 63 8 7 141 1 0 12 0 1 177 12 3 118 0 2 317 11 16 11 1 0 26 0 5 296 12 6 100 1 5 220 5 11 333 18 18 67 6 1 96 0 1 4 1 0 116 1 0 115 2 1 101 0 2 229 0 1 356 0 7 7 24 17 70 1 0 28 15 12 5 0 3 56 1 4 254 1 0 14 0 1 375 1 22 17 2 0 56 0 4 7 1 0 127 0 4 8 2 0 47 0 1 33 7 6 104 11 4 43 0 1 173 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846 chain 8052 chr2 242193529 + 39555915 39556024 MER30 238 + 128 231 74745 10 3 0 53 4 1 39 chain 116086 chr2 242193529 + 39585183 39586562 LTR12C 1709 + 0 1709 16216 276 0 11 505 1 319 6 2 0 107 0 4 316 1 0 165 chain 19024 chr2 242193529 + 39607149 39607417 AluSc 308 + 41 304 57523 51 4 0 48 4 1 6 0 3 104 5 4 46 chain 2765 chr2 242193529 + 39617740 39617769 MLT1K 546 + 401 430 101858 29 chain 25400 chr2 242193529 + 39643223 39643636 MER1A 529 + 0 495 48622 59 34 76 15 0 11 14 1 0 86 3 0 100 0 27 55 25 31 21 chain 53775 chr2 242193529 + 39654917 39655625 L1PA8 5853 + 4160 4871 28291 30 1 3 29 1 2 9 0 1 4 1 0 100 1 0 396 0 1 136 chain 23032 chr2 242193529 + 39674206 39674644 L1PB1 5432 + 5000 5413 52310 81 0 2 24 7 10 17 1 0 13 10 7 5 2 0 8 2 0 51 2 1 17 1 0 45 1 0 20 19 7 19 29 24 19 1 0 21 1 0 22 chain 8165 chr2 242193529 + 39689596 39689711 L1MB3 1562 + 1437 1552 74493 19 0 1 11 1 0 84 chain 16860 chr2 242193529 + 39845041 39845357 THE1C 375 + 0 335 59961 13 2 0 34 0 6 17 15 16 93 57 70 40 0 1 45 chain 118175 chr2 242193529 + 39863202 39864733 THE1B-int 1605 + 0 1605 15855 13 1 3 414 1 26 39 24 24 26 0 1 43 1 0 306 3 0 61 1 2 142 8 57 448 chain 24278 chr2 242193529 + 39864733 39865092 THE1B 368 + 0 368 50376 144 0 1 23 3 1 29 35 45 125 chain 103672 chr2 242193529 + 39878202 39879501 L1PA8A 6298 + 4997 6290 17853 121 6 7 169 0 2 414 2 0 358 8 1 88 1 0 27 1 0 4 5 6 5 0 1 90 chain 20225 chr2 242193529 + 39900261 39900646 THE1D 372 + 2 360 56107 154 51 59 6 2 0 53 51 18 68 chain 80631 chr2 242193529 + 39974191 39975092 L1PA4 6152 + 3219 4123 21509 31 0 3 870 chain 311816 chr2 242193529 + 39985141 39988644 L1PA3long 6157 + 616 4112 6577 95 7 0 145 3 0 170 1 0 798 0 1 949 0 2 1115 1 2 219 chain 304278 chr2 242193529 + 40024395 40027940 L1PA5 6144 + 2550 6131 6734 557 15 12 90 1 4 32 0 9 391 32 31 802 0 2 146 1 2 169 0 5 495 1 5 382 0 2 158 0 10 99 0 4 174 chain 14521 chr2 242193529 + 40056733 40056895 L1PA5 6144 + 5134 5297 62876 96 0 1 66 chain 45702 chr2 242193529 + 40056895 40057405 L1PA5 6144 + 5301 5811 31206 510 chain 28080 chr2 242193529 + 40057407 40057730 L1PA5 6144 + 5812 6135 44746 323 chain 218380 chr2 242193529 + 40220886 40223513 L1PA7 6471 + 3819 6457 9083 10 1 0 174 5 0 559 7 15 204 0 5 319 10 4 398 0 3 28 0 1 82 0 3 40 5 6 372 0 2 413 chain 59395 chr2 242193529 + 40263336 40264031 L1PA4 6152 + 4623 5322 26537 294 10 1 88 0 13 303 chain 10068 chr2 242193529 + 40301457 40301629 L1PB1 5432 + 5170 5327 70264 50 2 1 16 2 1 43 1 0 15 4 1 14 9 0 16 chain 3979 chr2 242193529 + 40302874 40302918 L1PB1 5432 + 4748 4792 91583 44 chain 26278 chr2 242193529 + 40345653 40346011 L1PA8 5853 + 5503 5853 47306 61 1 0 44 2 0 76 1 0 7 1 0 47 6 5 12 7 6 73 1 0 19 chain 34386 chr2 242193529 + 40381627 40382091 LOR1a 498 + 15 485 38442 168 0 2 106 12 13 28 1 3 64 0 1 71 0 1 4 1 0 9 chain 38017 chr2 242193529 + 40399802 40400263 LTR2 463 + 0 462 36059 362 12 13 87 chain 37381 chr2 242193529 + 40413068 40413478 L1PA4 6152 + 5457 5866 36492 361 1 0 48 chain 72548 chr2 242193529 + 40442279 40443270 L1PA8 5853 + 4875 5853 23423 69 1 0 43 0 4 20 7 3 19 5 0 531 1 0 46 3 1 67 13 11 54 1 0 17 2 1 92 chain 126029 chr2 242193529 + 40491348 40493493 L1PA3long 6157 + 4002 6144 14550 466 3 0 100 0 1 1439 1 0 136 chain 27189 chr2 242193529 + 40496795 40497084 L1PA2 6032 + 5740 6029 45985 289 chain 75547 chr2 242193529 + 40503425 40504645 L1MA1 4479 + 3010 4180 22705 112 9 10 25 2 0 9 1 2 7 4 0 72 1 0 4 1 0 12 3 0 48 5 0 78 18 15 115 3 1 56 0 1 138 1 0 9 5 1 10 1 0 20 1 0 71 1 0 5 31 28 88 1 0 5 3 0 126 1 0 10 1 0 19 2 0 35 1 0 9 1 0 5 7 5 11 9 0 8 chain 36006 chr2 242193529 + 40529369 40529804 L1PA7 6471 + 6036 6470 37412 430 1 0 4 chain 12128 chr2 242193529 + 40563859 40563992 L1PA5 6144 + 5831 5964 66608 133 chain 7574 chr2 242193529 + 40659547 40659645 L1PA16 3655 + 3406 3504 75920 98 chain 38959 chr2 242193529 + 40677825 40678366 LTR12_ 688 + 0 673 35386 16 9 8 66 26 1 52 0 24 44 3 4 244 0 133 81 chain 243955 chr2 242193529 + 40681884 40684941 L1PA7 6471 + 2639 5714 8378 55 0 1 10 0 3 113 0 1 195 22 25 6 1 0 455 1 0 103 0 1 222 1 0 359 7 8 127 3 0 58 0 2 424 2 7 94 1 0 3 0 2 326 0 1 233 0 5 140 4 3 17 1 0 62 0 2 12 chain 162897 chr2 242193529 + 40692078 40693921 L1PA4 6152 + 3670 5515 11550 965 1 0 424 0 3 453 chain 8820 chr2 242193529 + 40702544 40702749 L1PB1 5432 + 5238 5422 72949 43 1 0 15 2 0 6 64 49 19 1 0 21 1 0 13 1 0 18 chain 19304 chr2 242193529 + 40758162 40758404 L1PA7 6471 + 6204 6449 57232 33 0 4 16 1 0 192 chain 26459 chr2 242193529 + 40766054 40766382 MER83 447 + 45 397 47039 66 0 24 262 chain 189969 chr2 242193529 + 40780987 40783108 L1PA3long 6157 + 4032 6157 10117 793 0 1 72 0 1 659 0 1 590 0 1 7 chain 63660 chr2 242193529 + 40801968 40802697 L1PA4 6152 + 5418 6151 25486 6 0 1 266 0 2 252 1 2 204 chain 271864 chr2 242193529 + 40853929 40857180 L1PA6 6164 + 2895 6156 7665 270 0 1 11 0 1 4 2 3 4 0 1 34 0 8 354 0 15 101 1 2 196 11 6 413 7 6 709 0 8 272 0 1 87 1 2 610 22 1 132 1 0 9 chain 52726 chr2 242193529 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362 3 4 196 2 1 83 1 0 7 0 1 71 2 4 111 15 5 70 0 1 164 0 1 32 15 0 142 11 12 97 chain 71713 chr2 242193529 + 41274244 41275041 L1PA4 6152 + 5084 5881 23611 797 chain 110276 chr2 242193529 + 41335407 41336695 LTR12C 1709 + 0 1709 17040 794 0 318 5 3 1 106 0 4 212 0 101 168 chain 46375 chr2 242193529 + 41342047 41342660 L1PA8 5853 + 5247 5844 30892 265 11 0 50 1 0 47 2 0 69 2 1 8 2 1 11 1 2 43 1 0 16 2 1 77 0 1 5 chain 331042 chr2 242193529 + 41358477 41362266 L1P1 4361 + 1 3799 6198 484 17 13 740 1 0 323 3 15 261 0 1 289 0 1 1671 chain 46028 chr2 242193529 + 41362271 41362786 L1PA4 6152 + 5636 6151 31048 515 chain 29756 chr2 242193529 + 41377832 41378263 LTR7C 471 + 0 471 42297 21 0 23 25 11 30 67 0 3 32 6 2 204 1 0 26 4 6 7 2 0 25 chain 37489 chr2 242193529 + 41423567 41424232 L1PB1 5432 + 4787 5427 36407 20 0 8 105 1 2 118 1 0 4 0 1 49 13 14 7 3 0 23 1 0 9 1 0 9 2 0 3 2 0 9 2 0 51 1 0 17 1 0 45 42 30 4 1 0 5 0 1 6 2 0 5 2 1 13 2 0 24 1 0 21 1 0 13 1 0 13 1 0 6 1 0 4 chain 5235 chr2 242193529 + 41472074 41472140 THE1D-int 1627 + 1557 1622 84531 6 1 0 59 chain 19149 chr2 242193529 + 41472145 41472514 THE1D 372 + 0 360 57398 8 6 0 136 104 102 95 1 0 19 chain 158087 chr2 242193529 + 41516940 41518687 L1PA3long 6157 + 4409 6157 11868 521 1 0 1050 0 2 175 chain 163125 chr2 242193529 + 41551964 41553706 L1HS 6032 + 2336 4078 11539 1742 chain 193241 chr2 242193529 + 41555986 41558511 L1PBa 3878 + 1093 3666 9963 285 0 4 78 0 4 16 6 7 126 14 17 229 1 3 67 0 9 539 0 3 43 0 6 178 0 10 17 1 2 42 0 1 19 0 1 9 0 8 68 0 1 170 0 2 152 1 0 4 0 1 8 4 0 196 2 0 37 1 0 143 1 0 68 chain 37125 chr2 242193529 + 41585744 41586240 L1PA10 4194 + 3667 4161 36663 76 0 1 298 5 6 60 12 9 33 2 1 10 chain 33987 chr2 242193529 + 41623735 41624216 MER75 514 + 33 514 38713 73 30 19 113 2 3 256 0 10 7 chain 42596 chr2 242193529 + 41627844 41628391 MLT2A2 560 + 0 548 33002 291 7 0 8 1 9 240 chain 150944 chr2 242193529 + 41637612 41640160 L1PA10 4194 + 223 2431 12293 9 2 0 8 6 5 5 1 0 22 2 0 15 45 19 8 1 0 21 2 0 16 7 12 7 1 0 10 1 0 14 4 0 8 20 18 64 2 0 205 6 5 192 34 33 163 323 8 385 0 1 4 0 1 4 5 4 90 1 14 9 0 3 13 0 5 136 8 0 194 2 0 155 8 9 109 5 9 196 chain 52383 chr2 242193529 + 41641035 41641627 L1PA4 6152 + 5558 6150 28761 592 chain 109894 chr2 242193529 + 41739780 41741073 L1PA4 6152 + 4861 6135 17089 51 28 6 116 1 0 272 0 4 431 1 0 292 0 1 101 chain 17230 chr2 242193529 + 41743777 41744012 L1PB3 3668 + 2513 2747 59549 108 4 3 6 0 1 36 1 0 80 chain 166775 chr2 242193529 + 41746115 41748716 SVA_F 1814 + 9 1814 11289 872 1 0 11 0 1 43 0 1 11 0 15 165 812 0 686 chain 26161 chr2 242193529 + 41747219 41747554 SVA_F 1814 + 1001 1284 42917 212 51 0 61 1 0 10 chain 3611 chr2 242193529 + 41747431 41747482 SVA_F 1814 + 988 1037 56968 13 1 0 10 1 0 26 chain 2762 chr2 242193529 + 41747583 41747622 SVA_F 1814 + 1089 1128 56968 39 chain 11853 chr2 242193529 + 41747634 41747765 SVA_F 1814 + 962 1091 67107 39 1 0 10 1 0 80 chain 2139 chr2 242193529 + 41747776 41747800 SVA_F 1814 + 861 885 105600 24 chain 2233 chr2 242193529 + 41747800 41747825 SVA_F 1814 + 886 911 83094 25 chain 1146 chr2 242193529 + 41747825 41747862 SVA_F 1814 + 861 898 79834 37 chain 15408 chr2 242193529 + 41747863 41748030 SVA_F 1814 + 962 1127 61777 39 1 0 10 1 0 116 chain 3669 chr2 242193529 + 41794521 41794565 U6 107 + 0 44 93836 44 chain 66256 chr2 242193529 + 41804858 41805783 L1PA11 4918 + 3652 4567 24893 532 3 8 121 0 4 7 1 0 10 1 0 48 10 12 9 2 0 71 2 0 13 2 1 20 4 0 9 8 3 10 13 9 15 1 0 13 chain 2911 chr2 242193529 + 41808032 41808064 L1MA2 4263 + 4067 4099 100745 32 chain 26372 chr2 242193529 + 41844878 41845428 MLT2A1 477 + 0 477 47160 15 13 6 96 6 5 18 1 2 25 2 6 24 11 13 96 5 0 18 1 0 56 122 56 41 chain 4048 chr2 242193529 + 41880731 41880797 MER53 195 + 1 68 91100 41 5 6 20 chain 24009 chr2 242193529 + 41914446 41914794 THE1D 372 + 0 372 50778 122 1 11 35 0 4 6 10 15 27 8 14 102 2 1 35 chain 9486 chr2 242193529 + 41915673 41915792 MER5A1 166 + 46 165 71502 119 chain 3151 chr2 242193529 + 41930424 41930465 MER5B 177 - 112 153 98355 41 chain 102581 chr2 242193529 + 41995003 41996181 SVA_D 2077 + 18 2064 17999 13 29 1 428 0 156 111 0 741 294 1 0 302 chain 65457 chr2 242193529 + 42016722 42017816 L1PA7 6471 + 5689 6470 25079 81 8 2 26 303 0 216 1 0 283 2 0 169 1 0 4 chain 3939 chr2 242193529 + 42108794 42108878 L2a 937 + 304 383 91836 34 28 23 22 chain 11188 chr2 242193529 + 42193146 42193327 Tigger3a 397 + 180 366 68265 134 34 39 13 chain 5914 chr2 242193529 + 42255394 42255483 L1MB5 1630 + 1510 1598 81423 36 7 6 46 chain 9772 chr2 242193529 + 42313255 42313440 MER4B 649 + 452 640 70879 17 1 0 7 1 0 7 0 7 7 7 0 25 0 1 4 1 0 23 15 20 9 0 1 53 1 0 7 chain 27913 chr2 242193529 + 42394508 42394893 MER4A1 472 + 0 472 45011 71 0 16 70 0 41 22 0 1 4 6 27 132 11 19 69 chain 15490 chr2 242193529 + 42499521 42499742 AluSp 311 + 12 236 61668 39 20 22 68 0 1 31 2 1 10 0 1 51 chain 9322 chr2 242193529 + 42543960 42544119 MER41D 557 + 24 185 71869 68 3 4 21 23 24 44 chain 24649 chr2 242193529 + 42677176 42677856 THE1B 368 + 2 368 49792 11 2 0 24 10 16 28 5 4 72 315 0 15 2 1 5 0 1 17 2 0 172 chain 30611 chr2 242193529 + 42773889 42774270 MER4A1 472 + 79 461 41461 25 1 2 355 chain 179032 chr2 242193529 + 42778166 42782558 MER4-int 2692 + 73 2692 10632 17 1 0 4 0 1 4 2 0 29 2 0 98 304 0 113 0 8 74 314 0 121 1 10 43 0 1 8 317 41 46 1 3 20 4 5 42 0 22 311 0 3 100 0 3 41 340 26 44 2 0 18 2 0 94 0 1 28 9 1 24 8 7 16 320 0 150 1 0 70 5 16 17 11 11 17 0 11 37 27 29 27 0 7 59 2 0 71 305 0 181 7 6 73 6 6 404 chain 37122 chr2 242193529 + 42782565 42783034 MER4A1 472 + 0 472 36669 15 0 2 4 0 1 11 1 0 398 0 1 40 chain 3656 chr2 242193529 + 42810535 42810573 tRNA-Ile-ATA 38 + 0 38 93954 38 chain 63521 chr2 242193529 + 42831722 42832491 LTR17 781 + 2 774 25522 107 1 2 216 1 0 106 2 5 336 chain 5104 chr2 242193529 + 42865468 42865547 MADE1 96 + 1 96 85145 33 5 22 6 1 0 34 chain 3067 chr2 242193529 + 42876742 42876777 MER33 330 + 41 76 99113 35 chain 24084 chr2 242193529 + 42943364 42943655 AluSp 311 + 3 294 50672 291 chain 20210 chr2 242193529 + 42952172 42952514 THE1B 368 + 0 368 56127 44 13 28 97 1 0 29 35 45 44 2 1 11 0 3 66 chain 542265 chr2 242193529 + 42989476 42995492 L1PA3long 6157 + 0 6149 1193 72 0 1 66 13 14 102 0 1 512 8 136 4231 0 1 688 1 0 157 0 2 166 chain 6771 chr2 242193529 + 43003900 43003992 MLT1B 390 + 280 374 78410 19 1 0 22 0 1 31 0 2 19 chain 26276 chr2 242193529 + 43090688 43091038 THE1B 368 + 0 368 47311 19 0 1 24 1 16 112 6 13 10 4 0 99 1 0 74 chain 3567 chr2 242193529 + 43122860 43122908 Charlie4a 502 + 413 457 94679 29 4 0 15 chain 5455 chr2 242193529 + 43177532 43177592 MER2 342 + 156 216 83426 60 chain 6509 chr2 242193529 + 43236686 43236760 L1MB7 1623 + 420 495 79311 22 0 1 52 chain 133975 chr2 242193529 + 43296902 43298616 SVA_F 1814 + 335 1814 13659 552 1 0 46 1 2 12 1 15 30 49 0 189 52 0 48 149 0 569 0 1 15 chain 4356 chr2 242193529 + 43297545 43297594 SVA_F 1814 + 1119 1168 60241 49 chain 4310 chr2 242193529 + 43297783 43297834 SVA_F 1814 + 941 1005 48454 6 0 15 39 2 0 4 chain 12590 chr2 242193529 + 43297883 43298032 SVA_F 1814 + 1053 1201 48454 51 1 3 61 1 0 2 1 0 18 1 0 13 chain 6380 chr2 242193529 + 43361083 43361186 MER20 218 + 112 218 79741 43 17 20 43 chain 4034 chr2 242193529 + 43408315 43408360 U6 107 + 9 54 91205 45 chain 7746 chr2 242193529 + 43439303 43439392 MER44A 345 + 130 219 75498 89 chain 7935 chr2 242193529 + 43450831 43451088 L1MB3 1562 + 1323 1552 75035 20 0 1 7 1 0 70 47 21 18 78 76 16 chain 119006 chr2 242193529 + 43532434 43533905 L1PA8 5853 + 3526 5853 15698 341 0 859 128 0 5 151 2 0 77 0 1 426 2 1 49 1 0 46 2 0 67 1 0 12 2 1 50 2 1 19 2 1 54 8 9 29 chain 9111 chr2 242193529 + 43589599 43589817 L1PB1 5432 + 5221 5422 72321 16 1 0 44 29 16 30 5 0 5 1 0 14 2 0 24 9 16 5 1 0 12 2 1 18 chain 110882 chr2 242193529 + 43599279 43601154 L1PB1 5432 + 3883 5424 16954 506 0 4 110 1 3 122 3 0 16 0 2 36 312 1 30 0 1 90 1 0 178 4 7 114 1 2 9 3 0 24 1 0 9 16 11 9 2 0 53 2 1 15 5 4 41 1 0 30 9 0 16 9 6 13 2 0 22 10 9 14 1 0 13 1 0 16 1 0 4 chain 14267 chr2 242193529 + 43641426 43641612 MER30 238 + 37 238 63244 71 4 19 111 chain 21597 chr2 242193529 + 43709593 43709841 AluSc 308 + 38 286 54362 248 chain 8224 chr2 242193529 + 43785348 43785944 L1MB3 1562 + 1253 1546 74341 53 0 1 13 318 28 4 1 0 21 29 31 13 52 26 32 38 49 22 chain 8030 chr2 242193529 + 43835600 43835910 MLT1A0 366 + 30 350 74810 19 197 207 94 chain 126995 chr2 242193529 + 43865951 43867346 L1PA3long 6157 + 4752 6147 14419 1395 chain 20313 chr2 242193529 + 43918995 43919323 MER1B 344 + 27 344 55997 45 24 20 124 4 0 50 22 19 59 chain 3390 chr2 242193529 + 43971445 43971484 MER4D0 881 + 768 807 96183 39 chain 5655 chr2 242193529 + 44016113 44016186 MLT1A0 366 + 282 355 82539 73 chain 5124 chr2 242193529 + 44128460 44128566 MER53 195 - 26 195 85047 57 12 65 12 11 21 14 chain 13379 chr2 242193529 + 44133759 44133941 MER50 708 + 502 685 64496 37 7 8 138 chain 9406 chr2 242193529 + 44136987 44137102 MER67C 710 + 588 703 71688 115 chain 3854 chr2 242193529 + 44184125 44184171 MIR 256 + 142 188 92465 46 chain 6980 chr2 242193529 + 44258533 44258629 MSTB1 431 + 334 431 77669 84 1 2 11 chain 192356 chr2 242193529 + 44260681 44262788 L1PA4 6152 + 4044 6151 10002 2107 chain 4239 chr2 242193529 + 44282537 44282616 MER53 195 + 8 83 89883 48 14 10 17 chain 55288 chr2 242193529 + 44335485 44336407 L1PA15 4387 + 3437 4366 27785 8 0 15 20 1 0 109 14 20 16 8 8 29 10 19 130 1 3 16 21 0 39 0 1 21 3 1 21 1 0 19 1 0 140 0 4 30 1 0 24 13 12 43 2 1 21 5 0 9 0 11 40 6 3 44 3 1 12 6 5 25 1 0 9 chain 16996 chr2 242193529 + 44422016 44422357 MSTB 430 + 0 421 59808 96 53 74 22 30 86 37 14 17 89 chain 17090 chr2 242193529 + 44424572 44424906 L1PB1 5432 + 5116 5424 59711 22 1 0 8 1 0 12 5 1 10 2 0 51 2 1 15 1 0 29 13 19 12 3 0 6 17 7 18 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 23601 chr2 242193529 + 44429584 44429830 AluYb8 318 + 65 311 51431 246 chain 75127 chr2 242193529 + 44444648 44445644 MER61-int 3695 + 2322 3344 22811 30 4 0 178 1 18 217 8 13 85 1 0 37 1 0 37 1 0 214 5 4 154 1 13 22 chain 16364 chr2 242193529 + 44537858 44538087 L1PB2 3958 + 3611 3838 60554 6 1 0 64 2 1 46 0 3 24 2 0 21 1 0 62 chain 30091 chr2 242193529 + 44577218 44578151 MER34D 576 + 2 564 41964 54 0 5 48 0 10 19 480 92 49 5 6 234 26 27 18 chain 83071 chr2 242193529 + 44587445 44588427 SVA_D 2077 + 0 1335 21003 30 1 18 11 13 0 147 6 3 47 0 1 285 0 40 320 0 311 122 chain 13436 chr2 242193529 + 44588427 44588588 SVA_F 1814 + 1116 1284 37150 1 0 6 36 0 1 97 0 1 16 1 0 10 chain 5740 chr2 242193529 + 44588588 44588654 SVA_F 1814 + 868 936 82179 12 0 2 54 chain 98007 chr2 242193529 + 44588662 44589903 SVA_E 1901 + 804 1901 18525 9 1 0 8 1 0 106 3 0 31 2 1 27 48 0 20 86 0 89 1 0 609 3 1 189 1 0 7 chain 2194 chr2 242193529 + 44588870 44588898 SVA_E 1901 + 834 863 95055 8 0 1 20 chain 2795 chr2 242193529 + 44588959 44589004 SVA_E 1901 + 1173 1259 43153 31 5 46 9 chain 60539 chr2 242193529 + 44591565 44592223 L1PA3long 6157 + 5499 6157 26221 658 chain 18686 chr2 242193529 + 44592499 44592767 MER44B 551 + 281 550 57911 100 0 2 21 2 0 103 13 14 29 chain 144919 chr2 242193529 + 44594061 44596143 L1PA7 6471 + 4707 6470 12696 96 0 2 797 0 4 8 0 3 83 1 4 279 336 4 284 18 16 163 5 8 12 chain 162796 chr2 242193529 + 44629607 44631405 L1PA3long 6157 + 4357 6155 11556 1798 chain 32573 chr2 242193529 + 44632590 44633036 MLT2A1 477 + 1 477 39892 126 5 6 35 5 2 215 5 37 55 chain 78728 chr2 242193529 + 44794182 44795082 L1PA5 6144 + 5237 6140 21934 56 2 6 703 1 0 138 chain 8730 chr2 242193529 + 44915027 44915159 MER5A 189 + 44 189 73139 35 0 12 74 10 11 13 chain 558541 chr2 242193529 + 45075744 45081776 L1PA2 6032 + 0 6032 223 917 0 1 736 4 0 1487 0 4 227 1 0 2660 chain 58213 chr2 242193529 + 45086617 45087356 L1PA8 5853 + 5120 5853 26897 489 3 1 69 1 0 5 15 14 42 2 1 19 1 0 93 chain 277950 chr2 242193529 + 45145761 45149446 L1PB1 5432 + 24 5404 7492 109 2 0 81 7 1789 491 30 0 79 22 5 18 1 0 1062 0 1 62 1 4 260 0 1 4 1 0 375 0 1 180 1 0 82 3 0 114 9 3 66 5 4 288 1 2 9 3 0 19 1 0 11 19 14 9 2 0 52 1 0 18 1 0 44 1 0 15 1 0 4 8 6 5 8 0 16 7 4 15 2 0 27 1 0 18 1 0 13 chain 5643 chr2 242193529 + 45218056 45218133 L1MB1 2102 + 1741 1816 82592 4 1 0 10 1 0 61 chain 21764 chr2 242193529 + 45222829 45223120 AluSp 311 + 0 288 54147 19 5 4 102 2 0 163 chain 4640 chr2 242193529 + 45235123 45235419 Charlie2a 992 + 380 670 87599 29 1 0 10 171 172 22 38 32 25 chain 16600 chr2 242193529 + 45240496 45240707 L1PA8 5853 + 5646 5853 60268 33 1 0 10 1 0 51 2 1 19 1 0 93 chain 67634 chr2 242193529 + 45246210 45247104 L1PA8 5853 + 4960 5853 24537 46 0 3 48 10 1 26 0 2 16 0 3 459 1 0 44 2 0 74 1 0 9 1 0 48 6 5 16 1 0 23 0 1 29 1 7 33 chain 10082 chr2 242193529 + 45291870 45292018 THE1A-int 1579 + 0 116 69838 28 32 0 88 chain 22172 chr2 242193529 + 45292018 45292337 MLT2A1 477 + 122 477 53606 18 0 1 27 2 6 150 1 0 61 4 0 13 4 40 39 chain 8383 chr2 242193529 + 45364567 45364710 MER63C 923 + 406 556 73940 24 1 0 66 26 34 26 chain 456183 chr2 242193529 + 45425519 45431786 L1PA7 6471 + 0 6469 4230 72 0 1 92 1 18 20 34 0 24 17 2 152 0 1 30 1 0 800 1 5 232 11 10 123 3 0 3 29 0 76 0 1 36 0 756 66 0 2 115 1 2 129 231 7 465 318 3 208 1 0 27 23 30 41 3 16 270 0 1 158 1 3 337 0 4 333 0 4 147 5 3 86 3 0 38 1 0 672 0 3 76 0 2 35 3 4 95 28 16 115 7 20 115 0 8 53 1 5 129 3 1 171 chain 2551 chr2 242193529 + 45427135 45427164 L1PA7 6471 + 2635 2664 101557 29 chain 16522 chr2 242193529 + 45427587 45427798 L1P3 4156 + 3928 4136 60267 177 4 2 6 1 0 23 chain 78160 chr2 242193529 + 45501327 45502255 L1P1 4361 + 4 946 22056 111 6 20 811 chain 49614 chr2 242193529 + 45502255 45502841 L1PA5 6144 + 5563 6144 29718 44 5 0 411 0 2 116 2 0 8 chain 5575 chr2 242193529 + 45555791 45555880 LTR26 622 + 529 618 82908 13 1 0 23 10 11 42 chain 17375 chr2 242193529 + 45590421 45590734 THE1C 375 + 0 317 59389 15 2 0 55 15 16 60 56 61 110 chain 30024 chr2 242193529 + 45591914 45592268 THE1A 353 + 0 353 42028 110 1 0 243 chain 22964 chr2 242193529 + 45635468 45636150 THE1B 368 + 1 368 52419 25 14 30 112 1 0 14 328 2 7 2 0 3 1 0 18 1 0 35 1 2 44 1 0 75 chain 28555 chr2 242193529 + 45708334 45708690 THE1B 368 + 0 368 44023 44 0 15 113 1 0 28 2 0 168 chain 9356 chr2 242193529 + 46155914 46156017 L1PA2 6032 + 5928 6032 71795 89 0 1 14 chain 23877 chr2 242193529 + 46191832 46192087 L1PA3long 6157 + 5902 6157 50986 255 chain 13432 chr2 242193529 + 46206658 46206802 AluYb8 318 + 174 318 64413 144 chain 274998 chr2 242193529 + 46219627 46222799 L1P2 5180 + 2017 5178 7582 858 15 1 119 1 0 220 0 1 299 1 0 179 0 3 946 0 3 444 1 0 46 1 0 9 1 2 27 1 0 4 chain 40451 chr2 242193529 + 46223934 46224402 L1PA5 6144 + 5668 6144 34347 18 0 4 320 0 6 116 3 1 11 chain 20124 chr2 242193529 + 46258836 46259187 MSTB 430 + 9 387 56227 115 72 90 12 0 2 24 0 1 22 0 1 31 5 10 70 chain 5644 chr2 242193529 + 46318533 46318629 Tigger9b 617 + 412 510 82589 55 18 20 23 chain 10510 chr2 242193529 + 46415163 46415280 L1PA4 6152 + 6034 6151 69400 117 chain 38477 chr2 242193529 + 46418474 46418952 L1P1 4361 + 1 479 35734 110 1 0 4 0 1 363 chain 27874 chr2 242193529 + 46525192 46525489 AluYd8 298 + 0 297 45076 297 chain 16886 chr2 242193529 + 46598440 46598655 MER30 238 + 11 238 59927 89 0 14 81 2 0 43 chain 143472 chr2 242193529 + 46602849 46604964 L1MA3 4352 + 2217 4315 12814 97 6 5 22 3 6 112 0 1 57 5 0 231 0 1 68 0 1 78 0 1 47 3 4 367 19 18 5 0 1 40 1 0 8 5 1 140 1 0 76 0 1 61 0 9 179 43 40 5 2 0 117 8 12 64 49 27 61 2 1 19 0 2 24 14 4 4 0 1 17 1 11 19 12 10 23 chain 14392 chr2 242193529 + 46788542 46788821 Ricksha_c 1012 + 736 988 63043 30 1 0 13 6 5 79 2 0 29 1 0 5 2 0 33 14 5 5 1 0 9 16 6 33 chain 28084 chr2 242193529 + 46903002 46903353 THE1A 353 + 0 353 44740 110 1 0 99 4 7 137 chain 118810 chr2 242193529 + 46903353 46904869 THE1A-int 1579 + 0 1579 15743 24 3 4 16 0 1 378 10 8 26 0 1 145 0 10 10 6 67 92 0 2 157 14 3 186 1 2 246 5 4 197 chain 27822 chr2 242193529 + 46904869 46905220 THE1A 353 + 0 353 45155 42 1 0 68 1 0 53 1 2 47 0 3 138 chain 124161 chr2 242193529 + 47099549 47100979 LTR12C 1709 + 0 1709 14820 650 0 278 184 1 0 6 2 0 106 0 4 481 chain 119551 chr2 242193529 + 47107097 47108582 LTR12C 1709 + 0 1709 15602 30 22 22 492 0 1 105 0 119 66 1 2 275 1 0 6 2 0 106 0 4 212 0 1 21 39 10 4 1 0 43 0 131 59 chain 35014 chr2 242193529 + 47118168 47118607 MER1A 529 + 92 529 38011 327 0 1 37 11 8 64 chain 26137 chr2 242193529 + 47202114 47202584 L1PA3long 6157 + 5642 6157 47513 17 170 215 283 chain 3185 chr2 242193529 + 47243640 47243686 MER45A 178 + 99 145 98030 21 0 1 6 1 0 18 chain 23200 chr2 242193529 + 47294452 47294822 MLT2A1 477 + 48 467 52082 85 6 7 28 0 4 20 41 41 146 0 5 13 1 41 20 1 0 9 chain 11644 chr2 242193529 + 47297217 47297363 MER65D 500 + 0 144 67490 129 1 0 7 1 0 8 chain 22977 chr2 242193529 + 47333734 47334015 AluSc5 308 + 0 282 52397 109 2 1 155 0 2 15 chain 12009 chr2 242193529 + 47335319 47335471 BC200 147 + 0 147 66825 42 2 0 96 3 0 9 chain 4362 chr2 242193529 + 47348413 47348507 LTR37B 484 + 9 107 89103 49 29 33 16 chain 3308 chr2 242193529 + 47406393 47406433 THE1B 368 + 328 368 96942 40 chain 119500 chr2 242193529 + 47406448 47407993 THE1B-int 1605 + 15 1593 15607 290 0 1 126 0 25 8 0 2 214 16 17 210 0 1 483 7 8 94 0 2 97 chain 14181 chr2 242193529 + 47492523 47492688 LTR3 431 + 250 416 63344 94 0 1 71 chain 3495 chr2 242193529 + 47511825 47511868 MER3 215 - 0 43 95279 43 chain 20466 chr2 242193529 + 47531691 47531968 MER51E 476 + 0 286 55818 43 12 18 62 0 3 160 chain 22185 chr2 242193529 + 47594624 47595034 LTR19A 502 + 0 430 53591 34 5 4 37 5 0 78 11 0 24 5 79 15 33 0 6 5 0 78 14 15 60 chain 4429 chr2 242193529 + 47619009 47619070 MLT1C 463 + 28 87 88741 5 2 0 54 chain 3754 chr2 242193529 + 47663759 47663804 MER57B1 401 + 0 45 93211 45 chain 22184 chr2 242193529 + 47687589 47687883 AluSq10 312 + 20 310 53593 142 18 17 114 3 0 17 chain 16313 chr2 242193529 + 47702450 47702681 MER34C_ 573 + 12 246 60614 128 11 13 57 0 1 35 chain 70674 chr2 242193529 + 47716182 47717208 LTR13 1007 + 0 1007 23830 73 2 0 23 29 14 206 73 74 238 2 1 57 5 1 9 0 3 116 0 1 159 3 1 31 chain 279347 chr2 242193529 + 47957654 47961971 L1MA1 4479 + 228 4183 7437 45 8 6 81 1 0 11 4 14 22 0 1 133 34 0 70 0 18 156 1 5 163 3 11 162 1 0 27 2 1 55 0 1 20 4 3 187 0 16 158 0 1 87 4 5 54 0 1 159 0 24 8 32 8 27 1 0 4 0 1 47 15 12 7 0 3 40 9 7 82 1 6 339 1 0 65 0 4 17 1 0 64 3 2 103 2 0 32 1 0 63 343 0 92 1 0 27 2 0 173 15 13 41 0 1 38 1 0 11 5 1 121 1 0 5 3 0 131 3 0 60 2 3 132 4 3 21 3 1 15 2 1 70 1 0 33 1 0 62 5 6 6 1 0 14 9 5 56 1 0 70 1 0 29 2 0 35 1 0 9 1 0 4 5 1 16 6 0 11 chain 87599 chr2 242193529 + 47971175 47972282 L1PB 1623 + 341 1446 20121 55 1 0 16 1 0 72 1 0 60 0 1 750 1 2 12 3 1 18 1 2 116 chain 516202 chr2 242193529 + 47973527 47979858 L1PA6 6164 + 0 6162 2462 153 12 14 314 3 2 1840 4 5 49 5 0 758 26 5 35 163 15 116 2 0 1059 0 4 259 5 6 160 3 2 500 0 4 689 35 36 131 4 0 6 chain 11235 chr2 242193529 + 47976726 47976852 L1PA6 6164 - 4425 4551 68192 126 chain 14933 chr2 242193529 + 47979986 47980339 L1PB1 5432 + 5105 5424 62343 12 3 0 21 25 20 9 2 0 53 19 17 44 1 0 15 1 0 4 19 8 19 8 5 14 2 0 24 1 0 21 1 0 13 2 1 15 1 0 4 chain 28430 chr2 242193529 + 48086458 48086962 MLT2A1 477 + 0 477 44222 142 2 3 24 1 5 29 0 2 153 113 79 40 chain 42554 chr2 242193529 + 48119100 48119635 MER41A 554 + 0 554 33032 258 0 19 8 7 0 118 0 7 144 chain 29720 chr2 242193529 + 48138409 48138853 L1M1 2793 + 766 1219 42346 6 2 0 30 1 0 29 2 0 8 1 0 18 0 13 23 33 29 81 1 0 36 0 4 51 0 4 81 1 0 40 chain 3471 chr2 242193529 + 48166352 48166390 MER45B 1037 + 991 1029 95453 38 chain 19810 chr2 242193529 + 48217575 48217814 7SK 245 + 1 240 56661 239 chain 52229 chr2 242193529 + 48233817 48234386 L1PA5 6144 + 5575 6144 28808 569 chain 17824 chr2 242193529 + 48239318 48239706 L1MA2 4263 + 3757 4113 58856 35 40 14 37 1 0 4 4 5 69 60 58 45 1 5 29 7 0 47 1 0 8 chain 12861 chr2 242193529 + 48246234 48246395 L1PA8 5853 + 5694 5853 65328 45 3 2 19 1 0 93 chain 6423 chr2 242193529 + 48250465 48250595 L1MB3 1562 + 989 1119 79595 63 35 37 8 2 0 22 chain 39335 chr2 242193529 + 48261786 48262436 MER4A1_ 611 + 0 611 35125 29 2 1 91 31 9 136 42 27 85 42 41 192 chain 39125 chr2 242193529 + 48284958 48285470 LTR10A 586 + 23 565 35268 36 0 8 6 0 1 29 0 21 16 1 0 62 9 10 69 1 2 136 1 0 146 chain 29761 chr2 242193529 + 48288552 48288926 THE1C 375 + 0 375 42285 176 1 0 4 0 2 193 chain 38619 chr2 242193529 + 48384540 48385019 MER9a3 513 + 0 513 35627 14 0 25 71 0 1 201 0 7 114 2 3 77 chain 325918 chr2 242193529 + 48386247 48390144 HERVK9-int 4720 + 36 4720 6283 13 8 5 4 1 0 66 1 0 7 2 1 30 13 12 773 0 2 555 1 2 942 0 755 437 4 0 204 2 9 591 1 0 69 0 34 173 chain 35564 chr2 242193529 + 48390144 48390655 MER9a3 513 + 0 513 37677 18 0 2 90 0 1 136 4 2 9 0 18 16 30 12 129 6 7 73 chain 12323 chr2 242193529 + 48422106 48422299 MER30 238 + 31 238 66259 75 20 32 40 8 10 50 chain 152505 chr2 242193529 + 48637421 48639753 L1PA14 3548 + 1221 3452 12200 274 0 1 41 0 8 37 0 3 49 124 7 331 0 4 187 16 18 178 1 2 105 7 8 61 6 5 39 1 2 6 1 0 59 29 49 77 0 2 164 19 15 47 2 0 5 2 0 56 6 8 41 13 9 12 2 0 7 2 1 82 1 0 82 1 0 30 2 1 8 5 1 36 4 2 12 10 8 14 1 0 37 chain 3335 chr2 242193529 + 48637850 48637887 L1PA14 3548 + 1545 1582 96727 37 chain 4239 chr2 242193529 + 48637893 48637938 L1PA14 3548 + 1591 1636 89888 45 chain 3111 chr2 242193529 + 48687235 48687271 MER3 215 - 127 163 98679 36 chain 23941 chr2 242193529 + 48735814 48736198 MSTA 426 + 0 426 50879 21 0 2 85 18 39 55 1 3 26 25 22 40 4 24 109 chain 545544 chr2 242193529 + 48739839 48745855 L1PA3long 6157 + 10 6156 997 142 0 1 623 0 128 231 0 1 5020 chain 16809 chr2 242193529 + 48895342 48895522 L1PA3long 6157 + 5962 6142 60021 180 chain 24977 chr2 242193529 + 48918997 48919295 L1PA4 6152 + 4571 4875 49319 58 1 0 161 0 2 19 0 5 59 chain 171874 chr2 242193529 + 48923456 48925399 L1PA5 6144 + 3555 5511 11003 794 0 4 793 0 5 142 1 5 213 chain 10160 chr2 242193529 + 48976989 48977103 L1PA7 6471 + 6347 6461 70086 114 chain 299747 chr2 242193529 + 49082109 49085507 L1PA4 6152 + 621 4151 6841 149 0 128 367 0 1 773 0 1 1130 0 1 769 0 1 210 chain 65476 chr2 242193529 + 49134311 49135051 L1PA3long 6157 + 5393 6133 25075 740 chain 25925 chr2 242193529 + 49170965 49171333 THE1B 368 + 0 368 47826 15 2 0 12 1 0 13 1 6 57 0 1 67 12 10 112 1 0 75 chain 28999 chr2 242193529 + 49203364 49203726 L1PA7 6471 + 6115 6468 43319 21 0 1 184 5 4 127 5 0 9 4 0 7 chain 483671 chr2 242193529 + 49209903 49215937 L1PA6 6164 + 0 6159 3563 128 0 1 16 17 16 261 9 5 31 8 7 44 6 10 28 4 7 233 0 17 151 0 1 184 0 2 310 1 0 208 6 9 53 1 0 124 25 38 298 1 0 30 0 4 108 0 56 123 0 1 4 0 12 71 0 1 139 1 0 117 0 30 312 2 1 32 0 1 54 20 22 317 0 3 329 0 1 699 1 0 7 25 7 360 1 2 67 6 0 38 1 2 183 1 4 691 0 1 148 chain 388922 chr2 242193529 + 49243412 49248318 L1PA7 6471 + 1554 6464 5334 508 5 6 561 12 3 164 0 17 76 0 4 17 0 1 121 1 0 246 8 9 11 20 2 233 0 1 15 0 4 384 0 1 62 1 3 253 3 0 231 0 1 526 1 0 37 4 0 32 0 1 111 5 6 137 0 1 88 0 2 26 0 2 149 9 12 180 0 1 337 0 1 287 9 4 36 chain 7603 chr2 242193529 + 49267728 49267818 L1PA7 6471 + 6223 6313 75863 90 chain 12294 chr2 242193529 + 49267820 49267965 L1PA7 6471 + 6314 6459 66295 145 chain 4143 chr2 242193529 + 49282089 49282249 MER106A 234 + 71 234 90499 17 6 8 39 79 80 19 chain 102737 chr2 242193529 + 49283597 49284737 L1PA4 6152 + 4835 5977 17982 1087 0 2 53 chain 504109 chr2 242193529 + 49298473 49304537 L1PA6 6164 + 0 6152 2996 237 0 2 23 2 1 124 13 9 20 0 1 50 1 0 50 0 2 48 1 0 1763 1 2 268 0 2 390 0 2 195 0 1 400 6 1 1026 0 1 4 1 0 47 15 0 4 0 101 931 0 2 29 0 2 264 13 10 90 0 2 48 chain 120634 chr2 242193529 + 49304890 49306225 L1PA3long 6157 + 4810 6149 15426 493 1 5 841 chain 478850 chr2 242193529 + 49312181 49317565 L1PA4 6152 + 744 6138 3661 499 0 1 345 1 0 1697 0 1 1351 0 5 1271 0 4 220 chain 57158 chr2 242193529 + 49375557 49376174 L1PA3long 6157 + 4894 5511 27207 617 chain 14594 chr2 242193529 + 49428702 49428872 L1PA6 6164 + 2792 2963 62808 72 0 1 98 chain 16395 chr2 242193529 + 49428874 49429081 L1PA6 6164 + 2964 3177 60528 200 0 6 7 chain 3979 chr2 242193529 + 49429096 49429190 L1PA6 6164 + 3186 3265 91582 10 10 0 35 16 10 6 0 1 17 chain 240844 chr2 242193529 + 49429190 49432076 L1PA6 6164 + 3268 6162 8455 636 0 2 421 0 1 155 1 0 34 0 3 792 0 4 486 6 4 45 0 1 185 0 1 81 2 1 42 chain 15543 chr2 242193529 + 49435814 49435999 L1PA7 6471 + 5407 5592 61596 185 chain 16854 chr2 242193529 + 49436000 49436552 L1PA7 6471 + 5598 5825 59967 24 5 13 108 1 0 44 332 0 38 chain 39098 chr2 242193529 + 49436558 49437033 L1PA7 6471 + 5833 6308 35289 475 chain 12277 chr2 242193529 + 49437034 49437190 L1PA7 6471 + 6310 6464 66321 149 2 0 5 chain 114003 chr2 242193529 + 49478171 49479590 L1PA7 6471 + 5042 6457 16551 189 0 5 54 16 5 166 0 1 159 2 0 164 0 1 345 1 2 182 0 1 141 chain 490141 chr2 242193529 + 49480879 49486482 L1PA4 6152 + 4 6152 3419 85 7 532 325 0 4 294 1 0 161 0 9 26 1 0 873 1 2 741 0 1 229 0 1 367 3 6 280 0 1 56 0 2 1035 1 0 266 1 3 699 1 0 150 chain 25137 chr2 242193529 + 49507116 49507450 THE1B 368 + 0 355 49063 44 0 15 109 1 0 32 1 0 106 5 13 36 chain 116317 chr2 242193529 + 49518985 49520424 L1PA7 6471 + 4842 6282 16166 107 1 0 36 1 0 5 2 3 446 0 1 181 1 0 9 0 1 211 13 14 426 chain 69730 chr2 242193529 + 49611243 49612323 MER11A 1151 + 0 1146 24061 46 9 108 22 8 0 54 0 4 60 4 0 141 8 9 94 0 1 136 13 15 52 0 4 89 49 67 18 53 1 60 6 7 158 chain 8153 chr2 242193529 + 49684449 49684549 L1PA17 2846 + 1672 1772 74513 100 chain 37219 chr2 242193529 + 49698689 49699176 L1PA7 6471 + 6007 6465 36601 140 29 1 157 4 5 149 2 0 6 chain 16846 chr2 242193529 + 49726637 49726951 THE1D 372 + 53 360 59982 22 19 0 48 5 9 34 14 22 5 5 0 24 11 17 102 2 1 23 chain 28243 chr2 242193529 + 49729624 49729935 AluYa5 310 + 0 310 44497 132 1 0 178 chain 13558 chr2 242193529 + 49864707 49864908 L1PA8 5853 + 5638 5846 64241 41 1 0 9 1 0 52 2 1 19 4 3 48 1 12 23 chain 80752 chr2 242193529 + 49875892 49876803 L1PA3long 6157 + 4409 5300 21481 374 20 0 517 chain 497101 chr2 242193529 + 49881893 49888317 L1PA7 6471 + 0 6438 3234 205 68 76 124 1 0 7 1 0 61 1 0 104 13 10 155 17 22 152 0 1 5 9 6 91 8 9 93 8 0 28 0 4 100 0 19 335 0 1 16 1 2 949 1 0 66 2 0 668 5 3 172 3 2 97 7 1 260 0 1 641 1 2 83 1 0 92 5 9 54 0 5 82 0 4 54 2 1 113 2 1 51 9 4 165 5 7 90 1 0 317 0 4 573 22 16 7 0 7 70 10 17 91 17 0 33 chain 11499 chr2 242193529 + 49912100 49912274 Tigger3a 397 + 182 361 67751 120 0 1 6 18 22 30 chain 17715 chr2 242193529 + 49946688 49946897 L1PA7 6471 + 4934 5143 58992 209 chain 13199 chr2 242193529 + 49953806 49954015 L1PA8 5853 + 5641 5846 64781 38 3 2 11 1 0 41 13 12 15 2 1 85 chain 5453 chr2 242193529 + 50041019 50041082 L1P1 4361 + 3963 4026 83442 63 chain 23505 chr2 242193529 + 50135417 50135720 AluY 311 + 7 310 51583 101 1 2 22 0 1 162 2 0 15 chain 13056 chr2 242193529 + 50166075 50166264 Tigger4a 237 + 30 221 65016 31 15 18 63 1 0 79 chain 112346 chr2 242193529 + 50188155 50189524 L1PA7 6471 + 5092 6467 16772 534 0 6 504 7 8 154 10 11 152 2 0 6 chain 19429 chr2 242193529 + 50237775 50238145 THE1D 372 + 0 370 57106 40 50 41 17 10 11 26 7 11 38 13 12 42 0 6 92 2 1 33 chain 62247 chr2 242193529 + 50273745 50274561 L1PA8 5853 + 5063 5853 25806 501 1 0 2 20 0 42 2 0 23 0 1 47 1 0 21 5 4 36 2 1 19 1 0 93 chain 13425 chr2 242193529 + 50328147 50328328 MER30 238 + 46 238 64428 47 0 3 11 4 12 119 chain 513781 chr2 242193529 + 50357784 50364248 L1PA7 6471 + 3 6465 2582 225 2 1 184 0 1 761 2 1 27 0 9 12 31 0 454 0 1 233 1 2 415 1 0 14 20 16 80 1 2 47 13 14 18 0 2 112 1 4 46 6 0 837 0 1 46 5 6 38 1 0 202 1 15 673 0 1 16 1 3 144 0 8 28 5 1 274 1 2 7 1 0 76 6 9 550 1 0 121 0 1 355 0 1 360 3 0 6 chain 108658 chr2 242193529 + 50411076 50412326 SVA_B 1603 + 52 1601 17224 35 0 19 317 0 116 255 0 164 17 3 1 415 8 10 200 chain 6001 chr2 242193529 + 50430374 50430520 MER3 215 + 8 169 81071 31 1 0 4 30 31 34 18 33 28 chain 25769 chr2 242193529 + 50483082 50483501 MER41B 635 + 194 606 48072 139 6 0 114 70 69 6 0 1 4 1 0 79 chain 10608 chr2 242193529 + 50573788 50573984 MER2 342 + 131 321 69215 122 1 0 4 47 42 22 chain 2348 chr2 242193529 + 50646160 50646215 MADE1 96 - 0 96 104469 17 1 42 37 chain 7598 chr2 242193529 + 50932504 50932729 L1PB1 5432 + 5221 5430 75876 14 2 1 32 72 64 14 2 0 24 1 0 23 1 0 11 1 0 18 1 0 4 1 0 4 chain 11059 chr2 242193529 + 50999528 50999652 MER11B 1079 + 939 1063 68472 124 chain 31514 chr2 242193529 + 51006204 51006560 L1PA4 6152 + 5800 6152 40726 346 4 0 6 chain 115434 chr2 242193529 + 51015862 51017262 L1PA7 6471 + 4949 6466 16322 281 0 115 171 0 1 99 1 4 839 2 0 7 chain 28138 chr2 242193529 + 51048292 51048591 AluYg6 310 + 0 299 44656 299 chain 8701 chr2 242193529 + 51048613 51048721 MER30 238 + 130 238 73211 108 chain 9586 chr2 242193529 + 51078854 51078967 MER41A 554 + 433 546 71288 113 chain 37540 chr2 242193529 + 51086236 51086694 LTR2 463 + 0 463 36378 129 1 5 246 0 1 82 chain 18083 chr2 242193529 + 51123616 51123810 L1PA3long 6157 + 5961 6155 58576 194 chain 80882 chr2 242193529 + 51178428 51179472 MER11A 1151 + 2 1144 21458 53 0 99 140 4 0 32 0 2 115 0 1 92 0 7 17 1 0 125 6 5 115 4 3 54 3 0 223 2 1 58 chain 90969 chr2 242193529 + 51363861 51364923 L1PA5 6144 + 5075 6144 19508 41 0 1 771 1 0 121 0 7 128 chain 475534 chr2 242193529 + 51391392 51397408 L1PA7 6471 + 0 6245 3736 19 0 3 220 8 22 286 9 176 26 0 1 104 1 0 657 1 2 35 7 17 140 0 11 812 6 7 93 2 1 141 2 0 249 0 1 202 7 8 75 11 12 176 0 2 5 0 2 498 5 0 125 1 2 448 0 1 41 18 35 16 0 4 143 0 4 127 5 0 334 0 1 74 0 1 260 1 0 626 chain 74236 chr2 242193529 + 51397666 51398912 L1PB1 5432 + 4262 5424 23023 27 12 9 331 3 0 95 2 0 71 24 23 176 7 3 103 56 16 30 1 0 10 6 2 9 2 0 53 2 1 16 9 8 32 8 7 10 1 0 6 22 11 16 3 0 19 2 0 24 1 0 18 8 7 9 1 0 16 1 0 4 chain 5797 chr2 242193529 + 51402088 51402156 L1MDb 1215 + 800 868 81932 68 chain 134162 chr2 242193529 + 51418198 51419688 L1PA3long 6157 + 4247 5741 13633 110 0 4 1380 chain 2920 chr2 242193529 + 51428143 51428174 MLT1C 463 + 93 124 100676 31 chain 34042 chr2 242193529 + 51428259 51428681 L1PA5 6144 + 5705 6144 38675 106 6 5 19 0 17 144 1 2 146 chain 4123 chr2 242193529 + 51435158 51435208 MADE1 96 + 46 96 90630 50 chain 46959 chr2 242193529 + 51436658 51437337 LTR12D 1347 + 403 1179 30674 20 0 1 12 4 0 92 8 39 6 2 0 121 0 17 262 0 1 6 0 2 20 48 99 78 chain 2910 chr2 242193529 + 51437344 51437381 LTR12D 1347 + 1083 1120 100770 37 chain 70339 chr2 242193529 + 51540567 51541426 L1PA5 6144 + 4530 5383 23906 629 18 7 127 1 5 38 7 8 39 chain 2887 chr2 242193529 + 51577556 51577603 MER2 342 + 132 183 100947 20 4 8 23 chain 5301 chr2 242193529 + 51623410 51623474 MLT2D 439 + 132 196 84193 64 chain 75459 chr2 242193529 + 51629935 51630776 L1PA4 6152 + 4512 5353 22729 841 chain 23591 chr2 242193529 + 51642088 51642365 L1PA7 6471 + 5235 5517 51446 238 0 5 39 chain 3202 chr2 242193529 + 51671565 51671602 MLT2B4 540 + 127 164 97881 37 chain 44094 chr2 242193529 + 51734666 51735160 L1PA4 6152 + 5658 6152 32087 494 chain 8321 chr2 242193529 + 51766671 51767180 L1MA8 2339 + 1807 2266 74110 33 4 0 43 270 236 29 58 49 19 19 17 24 1 0 9 chain 64643 chr2 242193529 + 51836056 51836850 L1P3 4156 + 3345 4139 25283 576 0 3 183 2 0 6 1 0 26 chain 119897 chr2 242193529 + 51854013 51855355 L1HS 6032 + 578 1917 15556 186 4 0 307 1 2 844 chain 290362 chr2 242193529 + 51891916 51895820 L1P2 5180 + 594 4499 7120 145 21 0 44 0 15 242 4 5 4 1 0 32 12 18 69 9 6 274 10 9 40 11 12 206 1 0 173 0 1 481 6 4 209 3 4 503 8 12 7 0 1 79 1 0 26 0 1 15 1 5 597 1 0 338 0 1 37 0 4 145 0 4 59 27 15 63 chain 307376 chr2 242193529 + 51913310 51917383 L1PA8A 6298 + 2199 6290 6673 103 1 2 41 14 17 36 4 9 95 15 0 362 0 1 100 0 4 390 1 2 45 0 4 39 0 2 247 3 0 117 0 1 55 0 1 206 1 0 191 10 11 107 8 18 103 0 1 185 0 1 4 7 6 397 1 4 185 3 4 194 1 4 78 21 14 185 0 1 64 36 37 418 chain 4755 chr2 242193529 + 51978063 51978123 MSTD 398 + 6 67 86926 36 0 1 24 chain 20456 chr2 242193529 + 51997693 51998062 THE1B 368 + 0 368 55825 15 2 0 25 0 5 45 52 55 27 16 14 36 5 1 68 1 0 77 chain 115904 chr2 242193529 + 52006616 52008014 LTR12C 1709 + 0 1709 16256 428 26 17 353 4 320 106 0 4 481 chain 70873 chr2 242193529 + 52050234 52051279 MER11C 1089 + 0 1059 23783 59 4 95 37 15 14 22 114 30 59 4 8 155 12 9 104 0 1 95 0 4 45 0 1 148 0 1 172 chain 16264 chr2 242193529 + 52059340 52059727 MSTB 430 + 26 430 60658 49 90 91 35 47 59 44 0 5 53 5 4 64 chain 6037 chr2 242193529 + 52067366 52067435 Tigger3d 321 + 54 123 80940 69 chain 31604 chr2 242193529 + 52126301 52126689 MER4A1 472 + 0 389 40661 220 0 1 168 chain 35831 chr2 242193529 + 52131392 52131857 MER4A1 472 + 0 470 37509 39 5 10 421 chain 29313 chr2 242193529 + 52155853 52156164 AluYa5 310 + 0 310 42863 132 1 0 178 chain 28875 chr2 242193529 + 52173308 52173615 AluYa5 310 + 0 306 43521 132 1 0 174 chain 32276 chr2 242193529 + 52174351 52174782 MER57A1 433 + 0 433 40131 273 9 10 30 0 1 119 chain 5894 chr2 242193529 + 52180855 52180954 MER57-int 2662 + 2407 2500 81512 17 18 12 64 chain 28513 chr2 242193529 + 52181037 52181477 MER57A1 433 + 0 433 44104 55 11 7 108 0 1 5 18 14 82 5 6 89 10 9 57 chain 58579 chr2 242193529 + 52192525 52193268 MER4E 760 + 5 753 26796 18 0 1 143 1 0 202 0 2 63 1 0 86 0 1 125 0 2 82 0 1 22 chain 24784 chr2 242193529 + 52231816 52232215 L1PA14 3548 + 2916 3300 49614 21 19 16 47 9 5 104 9 5 17 2 0 6 1 0 84 2 1 78 chain 58007 chr2 242193529 + 52235163 52235858 L1PA6 6164 + 5458 6162 26961 46 0 3 285 1 0 88 0 3 37 8 12 230 chain 46655 chr2 242193529 + 52263745 52264380 PABL_A 660 + 0 660 30793 11 6 22 14 5 9 12 16 19 406 1 0 134 0 3 30 chain 42943 chr2 242193529 + 52266817 52267428 PABL_A-int 1935 + 104 724 32815 22 9 27 142 1 0 30 14 2 10 1 0 69 4 6 144 0 2 6 0 1 159 chain 105123 chr2 242193529 + 52273718 52275690 L1PA5 6144 + 3594 6143 17669 426 711 1284 464 0 1 6 0 1 275 5 7 85 chain 21387 chr2 242193529 + 52281246 52281583 MSTA 426 + 18 405 54649 89 14 38 7 0 4 40 13 10 9 0 3 3 0 5 12 3 0 58 1 21 88 chain 3925 chr2 242193529 + 52328196 52328249 L1MA6 2487 + 840 899 91943 17 0 4 6 0 2 30 chain 13612 chr2 242193529 + 52334955 52335171 MER41B 635 + 341 560 64151 69 5 9 32 18 17 92 chain 26203 chr2 242193529 + 52337660 52338050 LTR7 482 + 0 474 47410 101 15 14 17 0 51 41 5 37 46 0 1 111 14 15 40 chain 6889 chr2 242193529 + 52359927 52360005 THE1C-int 1605 + 1515 1593 77997 78 chain 114637 chr2 242193529 + 52410031 52411388 L1PA7 6471 + 5069 6461 16448 516 0 1 16 5 9 10 1 0 673 0 31 136 chain 7645 chr2 242193529 + 52411806 52411901 MER101B 537 + 19 115 75762 36 0 1 59 chain 279065 chr2 242193529 + 52419723 52422901 L1P1 4361 + 1 3184 7451 606 0 1 584 6 9 1164 0 1 818 chain 140627 chr2 242193529 + 52535476 52537038 L1PA3long 6157 + 4592 6153 13051 430 1 0 1131 chain 29023 chr2 242193529 + 52613896 52614301 MER48 407 + 0 407 43286 157 20 0 77 28 50 123 chain 22313 chr2 242193529 + 52638462 52638784 MLT2A1 477 + 0 476 53393 129 0 3 33 8 5 9 1 2 23 0 1 77 6 158 36 chain 59817 chr2 242193529 + 52685737 52686613 L1PB3 3668 + 2625 3521 26428 42 1 0 11 1 2 97 0 1 210 0 2 8 3 0 81 1 19 120 0 1 71 11 10 15 0 18 57 3 4 79 24 9 18 1 0 3 1 0 18 chain 179691 chr2 242193529 + 52714256 52716219 L1PA3long 6157 + 4194 6157 10605 1963 chain 14665 chr2 242193529 + 52748226 52748603 THE1D 372 + 4 364 62714 64 131 123 47 6 12 24 26 11 79 chain 41252 chr2 242193529 + 52798712 52799419 L1PA11 4918 + 3946 4629 33820 340 0 5 40 9 10 52 2 1 80 2 0 14 1 0 16 133 107 18 chain 8050 chr2 242193529 + 52858382 52858487 L1PA16 3655 + 3363 3468 74752 105 chain 71424 chr2 242193529 + 52907491 52908342 L1PA7 6471 + 5614 6466 23669 89 1 0 604 1 2 12 0 1 144 chain 207652 chr2 242193529 + 52922024 52924315 L1PA3long 6157 + 3852 6142 9434 872 3 2 1416 chain 139997 chr2 242193529 + 53048230 53049807 L1PA4 6152 + 4561 6138 13098 1577 chain 11198 chr2 242193529 + 53059469 53059755 L1MA8 2339 + 2009 2257 68247 40 32 0 9 62 65 38 4 1 36 6 0 59 chain 86553 chr2 242193529 + 53061193 53062259 L1PA7 6471 + 5389 6457 20310 230 1 0 164 3 4 80 1 2 413 2 3 172 chain 140061 chr2 242193529 + 53069231 53070868 L1PA5 6144 + 4504 6142 13091 208 0 1 117 2 1 462 0 1 695 0 6 6 7 1 140 chain 6528 chr2 242193529 + 53081840 53082151 L1MA6 2487 + 2134 2379 79239 59 212 146 40 chain 35535 chr2 242193529 + 53083861 53084427 L1PB2 3958 + 3292 3838 37692 19 2 0 52 11 5 70 2 0 14 4 0 39 0 1 48 21 16 61 1 0 63 1 0 40 0 3 18 8 10 6 4 0 17 2 1 63 chain 75383 chr2 242193529 + 53112068 53113114 MER11C 1089 + 7 1063 22749 240 7 16 54 0 4 64 1 0 178 22 15 112 1 5 4 1 0 38 0 1 125 0 1 56 10 9 90 18 19 25 chain 46013 chr2 242193529 + 53159317 53159873 MER41A 554 + 0 554 31057 93 0 1 324 3 0 136 chain 174763 chr2 242193529 + 53162777 53165001 L1PA8A 6298 + 2230 4456 10852 269 0 2 10 4 2 840 3 2 453 0 1 69 1 0 4 7 9 353 0 1 101 0 1 4 1 0 105 chain 135388 chr2 242193529 + 53294629 53296800 L1MA2 4263 + 1965 4102 13502 23 8 25 16 14 8 5 0 1 6 0 4 5 0 3 96 0 1 99 39 43 19 1 2 77 0 7 78 0 1 69 0 4 53 8 9 22 7 6 18 14 16 87 1 0 81 15 17 45 5 6 64 38 0 23 24 12 396 0 1 4 1 0 24 3 0 5 0 12 116 1 0 10 6 1 39 1 0 38 1 0 88 1 3 43 27 10 148 24 21 67 19 14 13 4 0 24 0 1 8 chain 191897 chr2 242193529 + 53297993 53300100 L1PA3long 6157 + 4050 6157 10027 2107 chain 16517 chr2 242193529 + 53309020 53309201 L1PA2 6032 + 5851 6032 60343 181 chain 9058 chr2 242193529 + 53328849 53328989 MER21A 919 + 21 156 72424 37 0 13 51 18 0 34 chain 21575 chr2 242193529 + 53354195 53354482 L1PB 1623 + 1170 1450 54398 136 9 1 45 0 1 97 chain 9715 chr2 242193529 + 53375175 53375828 L1PREC2 3366 + 2020 2664 71019 288 8 0 173 1 0 183 chain 110303 chr2 242193529 + 53399665 53400840 L1HS 6032 + 4858 6032 17037 1022 1 0 152 chain 322095 chr2 242193529 + 53410923 53414709 L1PA5 6144 + 3 6144 6366 117 0 14 931 1 0 59 11 17 164 0 1 530 1 2 68 1 0 400 0 2318 344 5 17 312 0 4 511 0 1 331 chain 11363 chr2 242193529 + 53414713 53414850 THE1B 368 + 169 306 67980 137 chain 11421 chr2 242193529 + 53472879 53473058 MER67D 511 + 132 330 67878 20 14 33 106 1 0 4 4 5 30 chain 3059 chr2 242193529 + 53486852 53486914 LTR12C 1709 + 1006 1068 99228 34 16 16 12 chain 41892 chr2 242193529 + 53491715 53492400 L1PA16 3655 + 2945 3619 33424 34 12 21 200 15 19 71 2 0 9 38 35 67 0 2 12 1 2 176 8 0 3 9 0 7 5 0 16 chain 4296 chr2 242193529 + 53554400 53554450 MER52D 1964 + 1155 1205 89536 50 chain 541124 chr2 242193529 + 53587033 53593044 L1PA3long 6157 + 4 6152 1270 61 1 7 81 0 1 627 6 134 590 0 2 1718 1 2 14 4 0 2069 0 4 510 1 0 328 chain 6390 chr2 242193529 + 53659249 53659520 MLT1F 544 + 118 415 79704 26 135 160 26 29 30 55 chain 378282 chr2 242193529 + 53663047 53667675 L1PA7 6471 + 1827 6470 5514 270 5 7 5 2 0 504 3 4 8 3 1 6 0 1 166 1 2 682 2 4 16 2 0 359 0 1 107 0 3 237 0 2 93 1 0 369 0 2 311 5 6 75 0 1 33 6 5 49 3 0 105 0 1 4 1 0 11 1 2 340 0 6 830 1 3 12 chain 7712 chr2 242193529 + 53668227 53668324 LTR70 1284 + 1178 1273 75594 15 1 0 43 1 0 37 chain 4801 chr2 242193529 + 53668373 53668449 L1PB1 5432 + 5346 5419 86693 26 1 0 19 1 0 13 4 3 12 chain 23852 chr2 242193529 + 53688662 53688943 L1PA7 6471 + 6188 6469 51019 281 chain 19188 chr2 242193529 + 53708044 53708468 MSTA 426 + 0 426 57364 133 41 44 27 7 6 26 113 112 13 0 1 64 chain 2949 chr2 242193529 + 53718688 53718722 U5 65 + 11 45 100370 34 chain 7854 chr2 242193529 + 53721172 53721272 L1PA16 3655 + 382 486 75241 91 0 4 9 chain 180495 chr2 242193529 + 53758548 53760782 HERV17-int 4347 + 13 4343 10566 14 1 0 52 1 0 34 2 0 25 2 1 83 10 3 102 0 430 16 0 4 372 0 1 67 1 0 234 0 9 11 9 1 439 1 0 149 0 1672 226 0 2 383 chain 24504 chr2 242193529 + 53761100 53761414 LTR17 781 + 0 312 50014 61 1 0 118 1 0 133 chain 22592 chr2 242193529 + 53823835 53824097 AluSp 311 + 33 295 52997 262 chain 3525 chr2 242193529 + 53863765 53863834 MER3 215 + 15 87 95063 27 17 20 25 chain 85596 chr2 242193529 + 53878087 53879150 MER11C 1089 + 0 1085 20521 267 0 3 49 1 18 249 12 13 213 0 1 4 1 0 109 2 3 156 chain 6964 chr2 242193529 + 53900075 53900267 L1MB5 1630 + 1336 1534 77732 54 1 0 27 87 94 23 chain 20775 chr2 242193529 + 53952277 53952545 AluSc 308 + 17 282 55399 92 1 0 114 1 0 34 1 0 25 chain 7867 chr2 242193529 + 53955293 53955447 MER30 238 + 1 196 75208 14 3 21 36 4 5 17 14 38 6 2 0 58 chain 29800 chr2 242193529 + 53973338 53973802 LTR7B 505 + 0 505 42232 105 0 10 52 8 46 12 38 31 22 1 3 81 1 0 79 14 13 51 chain 3319 chr2 242193529 + 53989502 53989544 MLT1N2 510 + 0 42 96856 42 chain 3618 chr2 242193529 + 54010506 54010576 L1MA3 4352 + 4258 4325 94286 23 2 1 6 1 0 25 2 1 11 chain 187206 chr2 242193529 + 54023710 54027026 L1PB1 5432 + 2727 5404 10244 114 2 1 87 0 4 86 0 1 83 296 0 177 5 6 214 0 1 129 5 4 86 5 0 194 7 21 56 8 9 154 1 5 247 27 9 117 332 0 77 0 4 8 0 1 81 0 2 65 10 20 352 1 0 2 1 0 12 2 0 3 2 0 8 33 31 22 2 1 14 4 3 43 1 0 15 3 0 15 9 0 15 3 1 5 1 0 14 2 0 24 1 0 34 chain 4844 chr2 242193529 + 54029181 54029243 LTR48B 642 + 571 632 86461 19 1 0 42 chain 3229 chr2 242193529 + 54052907 54052941 LTR41B 718 + 0 34 97679 34 chain 6770 chr2 242193529 + 54109113 54109231 L1PB1 5432 + 5030 5134 78413 73 25 11 20 chain 7096 chr2 242193529 + 54109287 54109399 L1PB1 5432 + 5182 5291 77275 31 9 8 16 1 0 44 1 0 10 chain 2001 chr2 242193529 + 54109474 54109495 L1PB1 5432 + 5349 5370 106266 21 chain 2834 chr2 242193529 + 54109496 54109531 L1PB1 5432 + 5370 5404 101369 22 1 0 12 chain 4382 chr2 242193529 + 54148906 54148961 MADE1 96 + 0 96 88982 17 0 41 38 chain 8676 chr2 242193529 + 54204292 54204429 MER30 238 + 94 238 73271 19 4 14 58 8 5 48 chain 49528 chr2 242193529 + 54229914 54231330 MER4E 760 + 0 760 29753 23 0 1 240 0 1 4 1 0 163 786 129 199 chain 19533 chr2 242193529 + 54252673 54252917 AluY 311 + 52 296 56981 25 6 5 50 0 1 163 chain 4491 chr2 242193529 + 54355357 54355408 MER96 175 - 34 85 88383 51 chain 31672 chr2 242193529 + 54418950 54419319 L1PA8A 6298 + 5915 6292 40606 266 0 3 28 0 5 75 chain 141356 chr2 242193529 + 54485157 54486744 SVA_D 2077 + 6 2077 12994 15 4 0 16 1 0 690 0 1 110 0 399 66 0 98 668 9 0 8 chain 19998 chr2 242193529 + 54518220 54518461 L1PA6 6164 + 5921 6162 56387 241 chain 124137 chr2 242193529 + 54698421 54699828 SVA_C 1631 + 57 1631 14823 122 0 1 446 0 37 100 0 40 35 0 88 29 1 0 48 0 1 113 0 1 513 chain 2835 chr2 242193529 + 54706498 54706530 Charlie7a 264 + 149 181 101366 32 chain 11287 chr2 242193529 + 54718655 54718865 Tigger2a 444 + 8 219 68102 38 51 55 8 3 0 110 chain 4517 chr2 242193529 + 55018831 55018960 L1MC4 1079 + 1 106 88220 25 56 33 15 1 0 32 chain 11582 chr2 242193529 + 55029016 55029327 MLT1A 405 + 75 394 67600 31 9 12 13 8 6 38 111 114 60 1 5 40 chain 170611 chr2 242193529 + 55074542 55078148 L1PB1 5432 + 2927 5404 11077 324 0 1 320 10 12 131 28 23 11 5 0 6 4 2 452 8 10 88 0 5 57 6 7 72 0 4 30 2 0 64 1 0 80 3 0 79 0 2 24 1036 1 282 0 2 82 120 74 29 9 1 18 2 1 14 2 1 44 13 2 14 2 0 5 26 7 17 26 21 24 1 0 16 6 5 13 chain 3178 chr2 242193529 + 55085213 55085258 MLT2B4 540 + 496 535 98119 6 6 0 33 chain 6480 chr2 242193529 + 55108709 55108802 MADE1 96 + 0 96 79408 47 7 10 39 chain 53629 chr2 242193529 + 55124431 55125306 L1PA14 3548 + 2642 3447 28356 47 1 0 105 1 0 99 0 3 24 1 0 18 2 1 9 1 0 5 2 0 40 25 21 102 8 4 11 2 0 5 2 1 84 2 1 38 45 0 72 1 0 11 5 1 23 17 15 5 1 0 11 1 0 17 1 0 6 0 1 25 chain 9804 chr2 242193529 + 55143896 55144057 L1MB1 2102 + 1895 2049 70810 43 3 1 68 2 0 8 8 6 17 1 0 11 chain 3906 chr2 242193529 + 55149343 55149409 MER5A 189 + 0 75 92078 23 9 18 34 chain 263751 chr2 242193529 + 55199647 55204939 L1MA3 4352 + 0 4092 7860 14 13 12 11 1 0 119 1 0 19 5 0 25 0 4 34 8 13 40 309 0 56 8 10 78 0 15 209 1 0 103 20 18 88 1 0 8 1 0 76 1 3 33 6 3 86 6 4 29 1 0 164 30 46 28 4 0 153 1 0 27 1 0 34 0 3 73 3 4 10 1 0 124 1 3 70 6 10 71 27 25 77 1 2 16 3 2 34 0 1 226 1 0 11 0 1 6 655 21 18 0 4 43 0 1 41 31 35 15 29 1 69 2 0 115 0 1 74 4 3 284 8 9 56 5 6 78 8 7 47 0 1 121 1 0 15 6 7 7 302 0 140 3 0 168 44 77 57 0 2 154 6 7 31 5 9 37 chain 26719 chr2 242193529 + 55205049 55205400 L1PB4 2604 + 2022 2372 46660 262 5 4 84 chain 31346 chr2 242193529 + 55271017 55271831 LTR2B 499 + 9 499 40851 5 1 0 52 3 0 5 1 4 36 0 7 10 392 59 45 0 3 71 0 1 10 1 0 182 chain 76671 chr2 242193529 + 55279270 55280234 LTR5_Hs 974 + 0 974 22401 182 0 5 97 2 3 6 7 0 525 9 16 34 9 7 16 0 6 77 chain 3911 chr2 242193529 + 55351770 55352025 L1MB7 1623 + 1384 1589 92039 36 187 140 6 3 0 23 chain 39120 chr2 242193529 + 55408308 55408854 MER41A 554 + 2 554 35271 53 37 38 375 8 13 73 chain 553611 chr2 242193529 + 55442106 55448353 L1PA3long 6157 + 0 6157 511 707 0 7 489 0 1 228 0 1 1658 0 1 851 0 3 416 0 4 1415 107 0 376 chain 522500 chr2 242193529 + 55462165 55468302 L1PA6 6164 + 0 6158 2158 509 9 8 275 1 16 152 0 2 28 0 1 462 1 3 151 0 1 409 4 5 312 1 0 864 0 1 297 0 1 206 2 1 629 1 0 37 0 4 269 1 0 550 0 4 118 1 0 509 4 0 323 1 0 11 chain 3092 chr2 242193529 + 55472423 55472478 L1MB5 1630 + 553 617 98851 14 1 6 19 0 5 16 1 0 4 chain 3064 chr2 242193529 + 55499949 55499985 U6 107 + 0 36 99148 36 chain 27935 chr2 242193529 + 55530041 55530396 THE1B 368 + 0 368 44977 44 0 15 109 3 1 60 0 1 63 1 0 75 chain 24286 chr2 242193529 + 55559067 55559373 AluSp 311 + 2 307 50351 63 7 8 217 2 0 17 chain 31199 chr2 242193529 + 55559794 55560496 THE1D-int 1627 + 0 401 40978 14 4 6 14 304 0 292 0 1 74 chain 77858 chr2 242193529 + 55568909 55569889 LTR13 1007 + 0 1007 22129 73 2 0 189 0 25 94 4 5 296 1 5 125 0 1 162 3 1 31 chain 25001 chr2 242193529 + 55600157 55600455 AluSp 311 + 13 311 49275 298 chain 4029 chr2 242193529 + 55620538 55620590 Tigger3c 601 + 483 537 91255 10 0 2 42 chain 117475 chr2 242193529 + 55650174 55651789 SVA_C 1631 + 36 1627 15976 22 8 10 35 0 27 328 0 76 150 12 15 21 3 0 117 49 0 15 4 0 12 2 0 3 1 0 32 1 0 4 50 19 33 2 0 9 2 0 27 1 0 4 41 10 13 1 0 233 3 1 359 2 0 16 chain 2096 chr2 242193529 + 55650879 55650919 SVA_C 1631 + 888 925 60253 22 6 3 12 chain 3921 chr2 242193529 + 55650993 55651043 SVA_C 1631 + 1041 1091 67129 50 chain 2149 chr2 242193529 + 55651121 55651162 SVA_C 1631 + 1041 1082 60253 41 chain 18101 chr2 242193529 + 55687231 55687449 AluSc 308 + 72 290 58565 218 chain 66230 chr2 242193529 + 55705688 55706427 SVA_D 2077 + 804 2077 24903 74 0 535 583 1 0 81 chain 6046 chr2 242193529 + 55718825 55718931 MER5A 189 + 1 106 80903 16 22 20 27 0 1 41 chain 70475 chr2 242193529 + 55747651 55748894 L1PA11 4918 + 3405 4331 23874 149 1 0 137 1 2 182 0 1 191 327 0 147 0 3 76 1 3 17 0 4 14 chain 35184 chr2 242193529 + 55750265 55750728 Tigger1 2417 + 1536 2009 37904 194 0 7 57 0 4 67 9 8 136 chain 29501 chr2 242193529 + 55795141 55795463 AluYb8 318 + 0 318 42607 126 4 0 192 chain 6175 chr2 242193529 + 55796378 55796749 L1PA15 4387 + 3567 3935 29827 140 0 2 104 2 0 15 4 0 42 0 4 16 6 4 38 1 0 3 chain 60386 chr2 242193529 + 55797152 55798121 L1PB1 5432 + 4489 5423 26266 61 1 0 75 1 2 5 4 0 451 33 31 24 2 1 5 1 0 9 10 6 9 2 0 52 2 1 15 1 0 45 0 3 10 4 2 6 1 0 11 9 0 10 35 30 8 1 0 9 1 0 22 1 0 12 1 0 14 1 0 5 chain 6275 chr2 242193529 + 55798964 55799341 L1PA15 4387 + 3935 4303 29827 40 1 0 40 7 9 60 21 20 27 1 0 54 1 0 16 4 0 16 1 0 49 6 4 33 chain 538391 chr2 242193529 + 55814032 55820140 L1PA4 6152 + 0 6146 1434 127 0 14 751 0 1 341 0 1 726 0 1 466 0 1 351 0 4 151 8 14 31 0 1 194 0 1 596 0 1 36 3 0 129 0 1 1343 0 4 17 1 5 695 0 1 142 chain 20000 chr2 242193529 + 55838021 55838356 L1PA15 4387 + 4030 4356 56386 9 0 3 62 1 0 27 1 0 53 2 1 21 4 0 10 2 1 54 4 0 24 0 6 13 3 1 14 5 0 7 1 2 18 chain 3194 chr2 242193529 + 55854650 55854689 MADE1 96 + 56 96 97943 24 0 1 15 chain 222277 chr2 242193529 + 56079324 56082051 L1PA8A 6298 + 3544 6292 8973 54 12 13 255 0 6 33 5 7 1299 1 2 276 3 2 172 0 2 114 0 9 390 0 1 113 chain 514365 chr2 242193529 + 56092580 56098710 L1PA5 6144 + 0 6143 2550 135 4 30 636 10 27 11 5 8 7 20 0 315 9 0 770 1 0 253 2 4 1683 5 4 304 2 0 157 0 4 435 0 2 78 10 0 1118 16 16 133 1 3 10 chain 3725 chr2 242193529 + 56117988 56118035 MER5A 189 + 113 159 93438 17 1 0 29 chain 11388 chr2 242193529 + 56146973 56147130 MER30 238 + 59 238 67938 47 4 0 6 3 26 58 0 3 39 chain 41896 chr2 242193529 + 56158639 56159285 HUERS-P3b-int 2065 + 1402 2029 33421 69 6 5 39 16 15 71 7 5 8 1 0 25 1 0 57 1 0 32 3 1 72 2 0 19 4 1 61 5 1 58 1 0 88 chain 21009 chr2 242193529 + 56166020 56166283 L1PA6 6164 + 5894 6162 55105 196 1 0 54 0 6 12 chain 97855 chr2 242193529 + 56174150 56175226 L1PA3long 6157 + 3597 4672 18544 1034 1 0 41 chain 16454 chr2 242193529 + 56301708 56301951 L1PA8 5853 + 5593 5849 60441 15 2 0 67 7 6 16 1 2 36 7 6 18 0 16 74 chain 287783 chr2 242193529 + 56319846 56323129 L1PA5 6144 + 2688 5969 7206 488 1 0 1041 2 0 22 0 1 1729 chain 10375 chr2 242193529 + 56411736 56411917 L1PB4 2604 + 2307 2481 69662 40 31 26 10 2 0 98 chain 365587 chr2 242193529 + 56421068 56425535 L1PA4 6152 + 10 4492 5727 111 7 21 425 28 29 149 0 1 430 9 0 559 0 2 340 11 9 234 2 1 252 0 3 161 0 5 435 1 0 939 0 2 115 1 0 116 0 1 142 chain 8279 chr2 242193529 + 56540902 56540992 L1PA5 6144 + 6041 6131 74216 90 chain 17084 chr2 242193529 + 56601355 56601556 L1PA4 6152 + 3475 3680 59718 135 0 4 66 chain 124958 chr2 242193529 + 56601556 56602977 L1PA4 6152 + 3681 5102 14711 1421 chain 433510 chr2 242193529 + 56617562 56623549 HERVL-int 5654 + 0 5654 4696 178 0 6 112 4 0 823 1 2 5 1 0 57 30 5 536 0 2 176 3 5 31 1 0 4 0 1 17 3 1 232 22 13 190 8 9 34 20 0 641 0 3 4 1 0 71 0 1 355 11 40 264 7 8 17 0 1 70 0 4 514 84 85 35 1 0 753 0 8 7 12 4 43 5 6 31 323 0 250 chain 51741 chr2 242193529 + 56658664 56659271 L1PA4 6152 + 5546 6151 28957 553 0 1 42 1 0 4 2 0 5 chain 174630 chr2 242193529 + 56662926 56664854 L1HS 6032 + 1449 3377 10863 1928 chain 85969 chr2 242193529 + 56683153 56684075 L1PA2 6032 + 5109 6031 20446 922 chain 32097 chr2 242193529 + 56719159 56719512 MER9a1 513 + 160 513 40275 353 chain 231719 chr2 242193529 + 56720857 56723703 HERVK9-int 4720 + 58 4715 8700 66 2 0 32 8 7 198 0 1 337 1 0 306 1 2 340 0 3 146 0 924 389 0 879 66 0 1 31 0 3 598 3 1 6 0 2 9 0 3 307 chain 43893 chr2 242193529 + 56723708 56724218 MER9a1 513 + 0 513 32195 199 0 3 311 chain 69647 chr2 242193529 + 56725906 56734709 L1PA5 6144 + 3346 6137 24087 336 1 0 91 0 1 268 1 0 86 7793 1782 227 chain 9988 chr2 242193529 + 56730448 56730776 L1MA6 2487 + 2138 2404 70446 5 0 3 72 42 26 22 118 73 37 3 0 22 1 0 6 chain 147904 chr2 242193529 + 56759715 56761547 L1PA7 6471 + 4641 6466 12487 509 29 24 180 1 0 267 2 1 672 39 39 133 chain 195737 chr2 242193529 + 56790509 56792677 L1PA3long 6157 + 3982 6155 9852 1962 0 3 36 0 2 170 chain 439108 chr2 242193529 + 56816456 56822708 L1PA8 5853 + 50 5847 4585 21 2 0 11 1 0 13 49 13 187 40 36 42 1 0 392 313 1 79 0 1 299 1 0 24 5 6 519 22 22 236 5 7 58 2 1 15 1 0 23 7 6 107 0 8 290 0 1 437 1 0 91 0 1 84 0 1 64 5 8 66 0 1 173 2 1 195 1 2 363 3 1 7 0 2 137 1 7 106 4 3 119 1 2 22 1 3 143 0 1 4 0 1 68 19 4 93 1 5 26 109 0 41 0 2 61 0 1 192 0 1 77 0 2 8 1 0 447 1 0 23 1 0 46 2 0 69 1 0 20 18 17 24 2 1 19 3 2 85 chain 167527 chr2 242193529 + 56866386 56868992 L1PA7 6471 + 4111 6430 11242 560 5 7 130 0 2 181 0 2 527 0 1 18 4 5 50 0 5 22 0 3 31 447 146 82 7 4 85 1 2 456 chain 4686 chr2 242193529 + 56887316 56887373 MER89 557 + 500 557 87346 57 chain 278524 chr2 242193529 + 56914743 56918097 L1PA7 6471 + 3088 6457 7470 184 2 1 200 4 0 11 0 2 401 0 1 886 6 9 21 0 2 385 0 1 130 0 1 179 0 2 98 0 4 8 0 3 123 0 1 716 chain 23531 chr2 242193529 + 56961916 56962265 THE1B 368 + 8 367 51534 161 1 0 19 20 21 4 0 1 18 3 11 48 1 2 74 chain 92325 chr2 242193529 + 57018456 57019479 L1PA3long 6157 + 3187 4209 19293 698 1 0 324 chain 41256 chr2 242193529 + 57022129 57022610 LTR2C 499 + 0 482 33816 440 0 1 41 chain 21869 chr2 242193529 + 57022627 57022932 L1P2 5180 + 430 735 54015 27 6 5 53 1 0 21 0 1 174 3 4 20 chain 3157 chr2 242193529 + 57105737 57105779 MADE1 96 + 0 42 98291 7 0 1 30 1 0 4 chain 10778 chr2 242193529 + 57105946 57106087 MER1B 344 + 116 253 68904 100 4 0 37 chain 27707 chr2 242193529 + 57149709 57150016 AluYk11 308 + 0 307 45305 43 0 2 194 2 0 68 chain 38532 chr2 242193529 + 57192262 57192733 LTR7Y 441 + 0 441 35687 165 31 0 158 0 1 117 chain 18745 chr2 242193529 + 57192733 57192935 HERVH-int 3825 + 0 202 57850 202 chain 38532 chr2 242193529 + 57193025 57193496 LTR7Y 441 + 0 441 35686 165 31 0 158 0 1 117 chain 286466 chr2 242193529 + 57193496 57196990 HERVH-int 3825 + 0 3825 7246 489 2 0 11 37 31 39 1 0 9 2 1 21 0 13 5 1 0 9 15 12 17 11 72 20 0 1 13 0 2 14 0 3 51 0 3 618 0 2 229 4 31 299 5 15 235 0 1 35 0 1 768 9 11 39 8 218 48 0 3 203 3 8 118 0 1 106 chain 39749 chr2 242193529 + 57198254 57198696 LTR7Y 441 + 0 441 34854 386 5 4 51 chain 24718 chr2 242193529 + 57227241 57227629 LTR7 482 + 0 470 49695 31 46 84 85 1 11 13 8 9 32 0 31 94 0 2 78 chain 76707 chr2 242193529 + 57227697 57228628 L1PA5 6144 + 5197 6130 22392 78 0 1 704 9 10 140 chain 265221 chr2 242193529 + 57229575 57232930 HERVH-int 3825 + 110 3825 7822 223 1 0 31 15 16 93 13 14 12 0 4 32 1 0 35 1 0 7 1 0 17 0 150 12 0 1 22 1 0 186 0 9 402 1 0 52 10 1 7 1 0 136 5 0 328 0 1 39 15 7 52 1 5 82 4 9 114 0 1 25 0 2 66 0 1 25 1 0 791 8 218 487 chain 23323 chr2 242193529 + 57234846 57235205 LTR7 482 + 0 474 51889 63 0 89 72 8 40 21 22 21 4 1 0 26 8 4 134 chain 132286 chr2 242193529 + 57240770 57242432 L1PA8 5853 + 4196 5853 13795 18 0 4 534 2 0 258 2 0 554 1 0 45 2 0 70 1 0 12 1 0 49 2 1 106 0 1 5 chain 97858 chr2 242193529 + 57263487 57264785 L1PA8 5853 + 4567 5853 18543 443 5 3 551 1 0 44 2 0 79 2 1 52 2 1 10 11 9 68 3 0 25 chain 326548 chr2 242193529 + 57282460 57286075 L1PA3long 6157 + 2130 5742 6273 567 1 0 104 4 0 417 0 1 1690 0 1 832 chain 12620 chr2 242193529 + 57303413 57303645 L1MA5A 2387 + 2101 2296 65776 7 1 0 47 2 0 26 2 0 33 38 8 8 2 0 66 chain 249148 chr2 242193529 + 57306563 57309347 L1PA4 6152 + 3358 6151 8261 2330 0 5 225 0 4 229 chain 28150 chr2 242193529 + 57321083 57321446 L1PA8A 6298 + 5923 6290 44637 83 0 2 72 6 8 202 chain 126710 chr2 242193529 + 57325933 57327365 L1PA5 6144 + 4698 6130 14448 600 2 1 5 0 1 464 2 1 40 0 1 319 chain 46493 chr2 242193529 + 57335123 57335781 LTR12C 1709 + 1124 1709 30851 91 44 13 114 37 0 115 5 1 160 8 7 84 chain 53037 chr2 242193529 + 57381454 57382032 L1PA2 6032 + 5450 6029 28561 436 0 1 142 chain 545914 chr2 242193529 + 57418710 57424719 L1PA2 6032 + 0 6025 974 137 1 4 566 0 7 1204 0 1 1224 0 2 506 1 0 1525 0 4 845 chain 11780 chr2 242193529 + 57494403 57494600 THE1B 368 + 162 368 67254 10 1 0 26 35 45 125 chain 26729 chr2 242193529 + 57510801 57511169 THE1C 375 + 0 375 46642 24 5 10 135 1 2 5 0 1 84 1 2 86 1 0 26 chain 100532 chr2 242193529 + 57556247 57557348 L1PA3long 6157 + 5051 6157 18230 104 0 5 997 chain 236162 chr2 242193529 + 57558980 57561563 L1PA3long 6157 + 3559 6142 8565 2583 chain 485958 chr2 242193529 + 57587069 57592429 L1PA3long 6157 + 662 6150 3514 114 0 128 412 2 1 68 0 1 4764 chain 123788 chr2 242193529 + 57606363 57607885 L1PA8A 6298 + 4760 6291 14883 397 0 1 331 6 11 172 5 8 611 chain 537571 chr2 242193529 + 57608847 57614840 L1PA3long 6157 + 10 6152 1478 142 0 1 588 0 1 34 0 128 77 0 8 858 0 4 351 4 8 2833 0 1 340 1 0 374 0 3 391 chain 27634 chr2 242193529 + 57646366 57646668 L1PA2 6032 + 5304 5606 45412 302 chain 52763 chr2 242193529 + 57668577 57669209 L1PA7 6471 + 5814 6452 28653 602 1 8 23 1 0 5 chain 45120 chr2 242193529 + 57687760 57688273 MER9a2 513 + 0 513 31515 513 chain 39273 chr2 242193529 + 57699983 57700480 LTR3B_ 500 + 0 496 35170 299 5 4 31 0 3 9 3 0 150 chain 324586 chr2 242193529 + 57827624 57831808 L1P3 4156 + 0 4099 6322 251 1 0 69 1 0 89 48 15 173 25 26 155 0 1 486 0 2 7 2 0 31 0 7 355 33 20 16 5 6 41 1 0 41 0 2 294 0 4 72 0 5 465 3 0 277 0 1 371 0 1 65 6 0 12 11 10 20 0 1 94 44 0 9 5 0 74 0 3 207 10 5 306 0 1 9 chain 3320 chr2 242193529 + 57831148 57831183 L1P3 4156 + 3446 3481 96844 35 chain 10505 chr2 242193529 + 57836922 57837096 MER30 238 + 36 222 69411 71 2 11 35 1 7 20 13 10 32 chain 8653 chr2 242193529 + 57868689 57868934 L1MA8 2339 + 2029 2265 73342 54 20 18 16 5 2 20 32 29 28 6 0 22 22 28 11 1 0 8 chain 7207 chr2 242193529 + 57952145 57952256 Tigger1 2417 + 2256 2386 76928 30 0 1 47 13 31 21 chain 23487 chr2 242193529 + 57967108 57967378 L1PA7 6471 + 6194 6464 51610 270 chain 22692 chr2 242193529 + 58012135 58012398 MER41A 554 + 290 554 52836 51 1 2 211 chain 27866 chr2 242193529 + 58013589 58013882 AluYd8 298 + 0 293 45087 293 chain 30770 chr2 242193529 + 58028541 58028888 L1PA5 6144 + 5789 6136 41332 347 chain 20838 chr2 242193529 + 58038090 58038416 THE1D 372 + 0 368 55318 53 9 13 6 4 0 93 25 37 26 0 28 48 0 2 62 chain 5767 chr2 242193529 + 58044924 58045047 MER20 218 + 117 213 82047 41 29 0 4 0 1 18 6 7 25 chain 544654 chr2 242193529 + 58171621 58177786 L1PA3long 6157 + 4 6157 1048 339 0 7 581 1 0 4 55 21 700 0 1 865 1 0 742 0 5 809 6 8 274 0 4 1775 0 4 6 0 1 7 chain 239000 chr2 242193529 + 58177829 58180717 L1PA7 6471 + 3548 6469 8495 64 1 0 310 0 3 6 1 4 99 0 3 918 1 0 115 5 4 371 0 6 151 0 4 15 0 3 374 0 2 85 0 1 108 1 13 251 1 0 11 chain 59300 chr2 242193529 + 58186866 58187573 L1PA6 6164 + 5454 6162 26567 60 0 2 500 2 1 145 chain 12065 chr2 242193529 + 58238090 58238268 MER30 238 + 34 235 66729 72 4 23 24 1 7 19 0 1 19 3 0 36 chain 229047 chr2 242193529 + 58262568 58265082 L1PA3long 6157 + 3629 6145 8775 1678 0 1 706 0 1 130 chain 3766 chr2 242193529 + 58267580 58267620 THE1D 372 + 331 371 93101 40 chain 67170 chr2 242193529 + 58275375 58276157 LTR17 781 + 0 781 24656 327 1 0 454 chain 27947 chr2 242193529 + 58314168 58314565 LTR7 482 + 0 482 44954 47 30 73 104 0 1 41 0 31 10 1 0 5 1 12 158 chain 252231 chr2 242193529 + 58314567 58317735 HERVH-int 3825 + 0 3825 8175 212 0 11 46 1 0 64 1 0 136 1 0 61 1 0 11 1 0 4 0 1 24 1 0 10 1 0 9 4 0 10 0 73 25 1 0 14 65 0 45 0 1 6 0 2 13 0 3 382 23 421 101 4 31 284 0 4 105 1 3 189 0 1 291 10 0 203 0 1 266 0 1 4 12 13 5 0 3 31 0 210 262 3 8 225 chain 24628 chr2 242193529 + 58318996 58319388 LTR7 482 + 0 482 49828 51 15 104 30 51 0 26 0 11 42 0 31 19 0 10 158 chain 518709 chr2 242193529 + 58325341 58331263 L1PA4 6152 + 1 6143 2325 1155 0 3 557 1 0 539 0 2 56 2 0 847 0 2 21 1 0 661 1 0 222 0 218 719 0 1 134 1 0 125 4 4 876 chain 13667 chr2 242193529 + 58408046 58408474 L1MC1 2226 + 1807 2191 64058 32 31 24 24 7 1 29 8 7 56 17 12 55 131 107 30 1 0 7 chain 27109 chr2 242193529 + 58489687 58490054 THE1C 375 + 0 370 46115 24 0 1 113 1 5 32 4 2 33 0 1 139 1 0 20 chain 19060 chr2 242193529 + 58511164 58511390 L1PA6 6164 + 5935 6161 57484 226 chain 15010 chr2 242193529 + 58529539 58529771 THE1B 368 + 70 306 62257 98 2 1 29 0 3 12 14 17 12 5 4 60 chain 6408 chr2 242193529 + 58647917 58648118 MER5B 177 - 1 177 79640 43 104 80 29 1 0 24 chain 463248 chr2 242193529 + 58688932 58694629 L1PA7 6471 + 741 6458 4046 434 0 1 58 1 0 144 0 1 382 0 1 773 7 6 100 3 0 165 0 4 237 23 15 34 0 4 429 3 1 91 0 2 469 1 3 117 0 13 255 0 5 73 5 7 143 18 15 780 0 3 96 8 15 176 2 0 240 7 1 77 1 0 185 2 3 5 1 0 114 9 0 9 0 11 20 chain 6557 chr2 242193529 + 58725514 58725628 MLT1A0 366 + 12 128 79133 30 12 13 27 2 3 43 chain 5256 chr2 242193529 + 58748353 58748415 MER33 330 + 164 226 84410 62 chain 83162 chr2 242193529 + 58822468 58823434 LTR13A 966 + 0 966 20989 695 0 5 8 6 1 257 chain 34539 chr2 242193529 + 58882435 58882885 L1PA8 5853 + 5410 5853 38330 156 1 0 42 2 0 74 1 0 11 1 0 47 2 1 19 2 1 92 chain 6134 chr2 242193529 + 58996660 58996740 MLT1D 503 + 418 498 80591 80 chain 27415 chr2 242193529 + 59065540 59065838 AluYa5 310 + 0 293 45685 118 5 0 175 chain 33549 chr2 242193529 + 59066762 59067241 LTR12E 1234 + 15 490 39045 42 26 20 48 7 6 328 1 3 9 7 8 11 chain 3795 chr2 242193529 + 59067241 59067282 LTR12C 1709 + 1668 1709 91578 41 chain 177971 chr2 242193529 + 59070947 59073128 L1PA7 6471 + 4269 6470 10680 5 0 2 166 17 15 141 5 7 64 5 9 68 1 0 530 0 4 341 0 3 15 2 1 60 4 6 91 4 1 280 0 9 85 5 6 292 chain 82800 chr2 242193529 + 59172493 59173771 LTR13A 966 + 0 966 21062 155 311 0 441 0 1 73 2 0 296 chain 17188 chr2 242193529 + 59192952 59193158 AluY 311 + 29 235 59584 94 1 0 4 1 2 106 chain 23007 chr2 242193529 + 59200089 59200452 THE1C 375 + 13 374 52347 134 0 1 25 52 46 123 4 7 25 chain 376970 chr2 242193529 + 59261410 59265611 L1PA4 6152 + 1946 6151 5536 99 0 1 136 0 2 200 0 3 2859 2 0 905 chain 8220 chr2 242193529 + 59322179 59322268 5S 121 + 0 89 74351 89 chain 544057 chr2 242193529 + 59326312 59332440 L1PA4 6152 + 6 6151 1077 574 1 0 2985 0 6 2143 0 12 425 chain 7296 chr2 242193529 + 59344935 59345021 MLT1A0 366 + 226 312 76682 86 chain 182740 chr2 242193529 + 59349035 59351577 L1PA7 6471 + 4254 6467 10453 42 47 13 254 309 2 260 0 1 367 0 3 96 0 2 7 1 0 78 0 2 25 0 2 301 0 1 617 6 8 132 chain 320840 chr2 242193529 + 59403078 59407807 L1PB1 5432 + 750 5422 6391 6 2 0 124 1 0 5 7 8 85 0 1 19 0 1 11 2 1 65 11 2 179 9 10 90 0 1 51 2 1 299 1 2 78 2 0 395 3 7 90 7 5 170 0 1 18 10 11 12 3 0 44 0 1 67 4 9 6 5 0 54 0 1 162 5 3 206 0 1 165 15 18 54 30 31 406 29 23 148 7 6 4 0 1 44 0 2 8 0 1 99 0 5 145 7 37 133 1 0 39 9 11 193 1 2 78 0 2 7 1 0 91 4 12 178 1 3 103 79 13 24 0 6 6 20 8 9 2 0 55 1 0 14 1 0 41 8 7 12 2 0 6 17 6 19 3 1 4 1 0 16 2 0 20 12 11 12 1 0 13 1 0 18 chain 131315 chr2 242193529 + 59431320 59432884 L1PA7 6471 + 3626 5188 13889 378 1 0 625 6 5 554 chain 3416 chr2 242193529 + 59438897 59438940 LTR16E1 515 + 429 473 95943 38 0 1 5 chain 116077 chr2 242193529 + 59477966 59479466 L1PA8 5853 + 4351 5853 16219 128 6 7 403 0 1 119 1 0 85 1 4 150 7 11 304 2 1 46 2 0 68 2 1 14 1 0 67 2 1 92 chain 9540 chr2 242193529 + 59503356 59503487 MER85 139 + 4 139 71390 8 0 1 78 0 10 13 7 0 25 chain 125909 chr2 242193529 + 59507332 59508875 THE1A-int 1579 + 0 1556 14574 203 1 0 213 1 2 568 1 14 556 chain 257364 chr2 242193529 + 59556385 59559164 L1PA2 6032 + 3252 6030 8048 2629 1 0 149 chain 64732 chr2 242193529 + 59638761 59639480 L1PA4 6152 + 5160 5879 25253 719 chain 4555 chr2 242193529 + 59647631 59647683 U6 107 + 11 63 88039 52 chain 58227 chr2 242193529 + 59648060 59648695 L1PA3long 6157 + 5270 5908 26892 42 0 3 593 chain 155629 chr2 242193529 + 59687256 59689011 L1PA5 6144 + 4381 6144 12030 327 1 0 586 0 3 829 1 7 11 chain 34914 chr2 242193529 + 59689011 59689431 L1PA7 6471 + 6050 6469 38083 87 1 0 332 chain 28701 chr2 242193529 + 59970769 59971072 AluYa5 310 + 7 310 43796 303 chain 45771 chr2 242193529 + 59987194 59987733 L1PA7 6471 + 5929 6470 31181 8 0 1 197 1 2 333 chain 4644 chr2 242193529 + 60002725 60002787 MER58B 340 + 37 101 87565 17 0 2 45 chain 496249 chr2 242193529 + 60034873 60040745 L1PA4 6152 + 11 6141 3259 1221 4 5 609 1 0 532 0 1 588 0 1 214 0 1 443 0 4 680 0 1 246 161 409 55 0 1 362 0 1 756 chain 27289 chr2 242193529 + 60076011 60076369 L1PA8 5853 + 5503 5853 45839 61 1 0 45 2 0 70 1 0 5 13 11 45 2 1 19 1 0 93 chain 4982 chr2 242193529 + 60080391 60080447 MER96 175 + 0 56 85737 56 chain 557841 chr2 242193529 + 60083662 60089694 L1PA2 6032 + 0 6032 255 256 1 0 1337 0 1 4438 chain 4140 chr2 242193529 + 60115922 60115973 MADE1 96 + 45 96 90507 51 chain 14296 chr2 242193529 + 60121402 60121602 L1PA8 5853 + 5650 5853 63205 29 1 0 9 1 0 20 0 7 28 1 0 17 6 5 88 chain 556575 chr2 242193529 + 60141191 60147223 L1PA2 6032 + 1 6032 324 2561 1 0 3470 chain 516732 chr2 242193529 + 60189025 60194803 L1PA3long 6157 + 0 5910 2436 149 10 11 26 2 1 80 0 1 508 0 128 1886 0 4 3024 1 0 92 chain 35476 chr2 242193529 + 60202812 60203200 L1PA2 6032 + 5644 6032 37739 388 chain 26681 chr2 242193529 + 60236736 60237086 L1PA8 5853 + 5510 5853 46712 54 1 0 43 3 1 70 2 1 8 2 1 52 2 1 19 1 0 93 chain 13680 chr2 242193529 + 60249950 60250116 AluSz6 309 + 8 174 64043 166 chain 3427 chr2 242193529 + 60274986 60275044 MLT1J 494 + 101 158 95842 27 8 7 23 chain 9235 chr2 242193529 + 60311729 60311846 L1MA10 1535 + 1264 1381 72045 117 chain 11331 chr2 242193529 + 60393929 60394088 L1PA8 5853 + 5696 5853 68031 44 2 1 19 2 1 92 chain 14829 chr2 242193529 + 60404283 60404496 MER20 218 + 5 212 62478 21 16 11 54 1 0 121 chain 25029 chr2 242193529 + 60417434 60417833 LTR7Y 441 + 0 439 49234 103 10 0 20 71 121 195 chain 287908 chr2 242193529 + 60417835 60421579 HERVH-int 3825 + 0 3762 7202 500 37 31 11 256 0 28 1 0 10 1 0 24 6 18 9 3 0 25 1 0 42 2 1 57 0 1 7 0 2 12 0 5 318 0 2 443 6 7 132 4 31 74 8 19 206 0 10 84 0 2 536 0 2 421 9 11 39 0 210 432 chain 39771 chr2 242193529 + 60422015 60422485 LTR7Y 441 + 0 441 34843 165 31 0 112 0 2 162 chain 6107 chr2 242193529 + 60425020 60426275 MER4A1 472 + 27 458 80703 20 1 2 4 1 0 46 1145 321 38 chain 5337 chr2 242193529 + 60596433 60596498 MLT1C 463 + 40 105 84022 65 chain 2829 chr2 242193529 + 60597190 60597220 THE1D 372 + 330 360 101413 30 chain 10810 chr2 242193529 + 60613002 60613207 L1MB3 1562 + 786 958 68837 126 64 31 15 chain 31726 chr2 242193529 + 60617142 60617687 Tigger3b 1229 + 201 765 40555 49 6 0 45 1 0 24 23 38 153 0 1 16 4 3 31 0 1 8 18 28 28 8 10 9 1 0 39 18 17 64 chain 24032 chr2 242193529 + 60630563 60630942 THE1B 368 + 0 368 50752 15 2 0 32 0 1 63 0 3 6 8 6 10 0 1 32 31 24 101 1 0 37 4 0 37 chain 6094 chr2 242193529 + 60713505 60713579 THE1B-int 1605 + 1526 1600 80759 74 chain 26258 chr2 242193529 + 60713584 60713942 THE1B 368 + 0 367 47340 15 14 30 127 2 1 19 6 0 175 chain 44932 chr2 242193529 + 60716265 60716953 MER50 708 + 17 708 31614 18 8 12 10 15 0 64 0 6 43 0 1 103 10 9 105 15 14 82 1 0 8 26 36 18 1 0 4 0 1 157 chain 31197 chr2 242193529 + 60788984 60789338 L1PA3long 6157 + 5804 6157 40979 336 1 0 17 chain 18216 chr2 242193529 + 60826482 60826701 MER57B1 401 + 0 219 58443 219 chain 25790 chr2 242193529 + 60865374 60865734 THE1C 375 + 13 375 48031 51 7 8 79 1 2 30 1 2 164 2 1 25 chain 3432 chr2 242193529 + 60921060 60921103 MER58A 224 + 166 209 95803 43 chain 152043 chr2 242193529 + 60928170 60929829 L1PA2 6032 + 4364 6029 12224 818 0 4 669 0 2 172 chain 3089 chr2 242193529 + 60961785 60961819 MADE1 96 - 62 96 98870 34 chain 8730 chr2 242193529 + 61000757 61000876 MER85 139 + 9 139 73140 87 3 14 29 chain 11942 chr2 242193529 + 61012331 61012538 MER39B 650 + 3 216 66934 77 0 3 12 18 23 13 27 25 60 chain 112405 chr2 242193529 + 61021062 61022482 L1P2 5180 + 13 1444 16762 137 11 10 31 4 3 53 3 2 19 16 16 230 2 1 272 0 15 642 chain 5593 chr2 242193529 + 61030097 61030165 L1MB8 1703 + 1444 1512 82836 68 chain 501444 chr2 242193529 + 61034337 61040733 L1PA6 6164 + 0 6151 3081 388 41 39 22 8 0 118 1 0 85 0 2 133 0 17 125 0 1 160 0 3 225 0 1 4 6 5 37 309 0 238 0 1 188 0 2 62 0 4 262 4 0 212 1 0 43 0 4 16 0 4 181 0 4 258 0 2 85 0 4 105 0 3 153 0 1 43 0 4 21 0 3 45 1 0 4 0 1 1037 5 17 475 0 2 225 0 1 240 0 3 160 0 3 165 0 1 365 1 0 139 chain 24574 chr2 242193529 + 61146561 61146863 AluSc5 308 + 8 305 49889 185 5 0 112 chain 24269 chr2 242193529 + 61152876 61153167 AluSp 311 + 3 301 50391 88 0 3 155 0 4 48 chain 4886 chr2 242193529 + 61170787 61170846 Tigger2 2703 + 2470 2529 86232 59 chain 71544 chr2 242193529 + 61306662 61307454 L1PA5 6144 + 5331 6123 23646 792 chain 19849 chr2 242193529 + 61381006 61381221 SVA_D 2077 + 1862 2077 56614 215 chain 28253 chr2 242193529 + 61395516 61395811 AluYd8 298 + 0 295 44479 295 chain 15212 chr2 242193529 + 61442955 61443325 L1MA5A 2387 + 2062 2375 62024 46 1 0 50 2 0 10 0 2 17 2 0 28 46 15 21 0 1 41 74 52 17 2 0 13 chain 4426 chr2 242193529 + 61509694 61509759 Tigger4a 237 + 149 215 88763 29 2 3 34 chain 3078 chr2 242193529 + 61539950 61540015 MER2 342 + 152 217 98995 25 18 18 22 chain 5108 chr2 242193529 + 61545422 61545488 MER47A 366 + 70 163 85122 31 0 27 35 chain 43769 chr2 242193529 + 61569953 61570796 MER9a2 513 + 0 513 32274 176 330 0 314 1 0 4 0 1 18 chain 220050 chr2 242193529 + 61591675 61594642 L1PA8 5853 + 324 5853 9039 142 12 9 157 1 2 149 0 3 7 11 6 538 0 1 225 131 2691 170 5 6 163 1 0 283 3 4 33 0 1 85 1 0 11 7 5 67 1 3 477 1 0 19 1 5 22 2 0 69 3 8 55 2 1 16 7 6 90 chain 9261 chr2 242193529 + 61605615 61605722 U6 107 + 0 107 71997 107 chain 33712 chr2 242193529 + 61675240 61675721 LOR1a 498 + 0 481 38913 290 12 13 80 19 18 80 chain 6603 chr2 242193529 + 61677137 61677538 MER57B2 428 + 0 107 78967 39 308 14 54 chain 6047 chr2 242193529 + 61709158 61709226 MER41B 635 + 479 547 80902 68 chain 26675 chr2 242193529 + 61778156 61778528 LTR3A 482 + 43 420 46722 223 9 6 34 0 7 67 5 7 18 2 1 14 chain 3661 chr2 242193529 + 61791719 61791763 MER50 708 + 180 224 93906 44 chain 28252 chr2 242193529 + 61797454 61797830 THE1C 375 + 0 375 44480 114 8 6 64 2 3 188 chain 24099 chr2 242193529 + 61823060 61823346 AluSg4 309 + 8 294 50647 286 chain 81187 chr2 242193529 + 62005459 62006356 L1PA3long 6157 + 5258 6157 21393 52 0 4 103 1 0 598 1 0 142 chain 13542 chr2 242193529 + 62047816 62048012 Tigger3c 601 + 332 530 64267 8 2 0 4 5 0 20 4 13 153 chain 182495 chr2 242193529 + 62054882 62057277 Charlie3 2679 + 161 2679 10470 111 3 0 50 0 4 17 0 4 93 0 22 26 5 12 28 1 6 25 1 0 39 0 1 36 11 22 57 1 0 99 0 3 159 0 3 75 0 1 11 0 10 64 2 4 27 5 8 83 0 3 312 0 3 46 15 22 187 0 4 483 0 3 14 0 4 41 8 5 61 13 1 153 1 44 32 chain 31737 chr2 242193529 + 62102521 62102966 MER39B 650 + 0 445 40546 34 8 20 13 0 2 11 4 0 342 13 3 20 chain 5086 chr2 242193529 + 62169719 62169856 LTR10F 562 + 106 187 85217 24 65 9 48 chain 24533 chr2 242193529 + 62275363 62275658 THE1B 368 + 64 356 49971 105 1 0 23 2 0 164 chain 15998 chr2 242193529 + 62347981 62348267 MER39B 650 + 41 268 61027 21 1 0 4 1 2 151 64 5 44 chain 5455 chr2 242193529 + 62349401 62349464 LTR26B 539 + 0 63 83435 63 chain 14212 chr2 242193529 + 62357111 62357303 MER47A 366 + 98 295 63310 111 4 9 77 chain 3729 chr2 242193529 + 62377989 62378037 L1MA4 2864 + 2756 2802 93411 10 2 0 36 chain 21786 chr2 242193529 + 62378144 62378486 THE1D 372 + 0 357 54112 56 13 19 91 21 24 4 1 0 31 3 9 43 0 1 79 chain 20697 chr2 242193529 + 62386796 62387473 MER34C2 569 + 247 558 55503 21 1 2 68 3 1 25 1 0 4 0 1 18 372 8 75 1 0 88 chain 13209 chr2 242193529 + 62390829 62390991 Tigger2a 444 + 210 373 64764 25 0 1 137 chain 110043 chr2 242193529 + 62393687 62395415 L1PREC2 3366 + 1364 3006 17076 330 0 3 61 16 15 33 6 7 13 8 9 43 56 22 384 0 1 33 0 1 9 6 5 7 0 1 258 1 0 118 1 0 35 2 0 54 2 1 17 55 29 14 29 21 17 6 1 14 67 52 27 0 1 6 chain 283852 chr2 242193529 + 62417871 62422393 L1MA1 4479 + 219 4157 7323 8 1 0 45 6 4 29 1 0 51 1 0 5 0 3 24 0 1 105 0 1 217 285 0 94 1 3 34 298 0 36 0 12 71 1 0 4 0 1 10 1 22 8 1 0 96 4 0 175 7 6 24 0 3 103 1 0 113 0 1 115 0 2 139 0 4 188 0 1 68 0 1 44 2 0 491 0 4 10 2 1 31 0 6 34 2 1 103 2 0 33 1 0 62 1 0 95 6 5 15 0 4 169 27 21 76 1 0 12 5 0 28 1 7 13 5 0 56 0 2 7 28 8 5 3 0 130 7 5 29 0 2 45 1 0 115 1 0 24 2 0 16 1 0 20 0 2 49 16 15 5 2 0 7 0 1 5 2 0 88 1 0 5 3 0 126 1 0 29 2 0 35 1 0 9 0 1 5 chain 20554 chr2 242193529 + 62491195 62491478 7SLRNA 320 + 18 306 55708 65 1 0 133 1 0 26 8 18 40 3 0 6 chain 4764 chr2 242193529 + 62504894 62504953 MER58B 340 + 268 327 86898 59 chain 2745 chr2 242193529 + 62553558 62553595 LTR37B 484 + 448 484 102003 12 1 0 24 chain 540642 chr2 242193529 + 62605237 62611370 L1PA4 6152 + 1 6143 1303 1235 1 0 561 0 2 638 0 4 1881 0 1 28 0 4 666 1 0 4 0 1 872 1 0 245 chain 27569 chr2 242193529 + 62627516 62627923 LTR22A 463 + 15 427 45488 201 26 29 91 23 22 10 0 1 7 0 2 49 chain 132249 chr2 242193529 + 62629662 62631219 SVA_C 1631 + 0 1631 13802 13 8 8 657 0 117 124 46 0 99 1 0 589 0 4 20 chain 2538 chr2 242193529 + 62630464 62630510 SVA_C 1631 + 873 918 71743 41 1 0 4 chain 517285 chr2 242193529 + 62632997 62639721 L1PA7 6471 + 8 6469 2412 253 3 4 146 0 1 56 0 1 350 0 7 193 0 1 82 0 1 107 0 4 281 0 3 54 0 1 28 0 1 449 1 0 134 0 4 717 0 4 363 0 1 443 0 1 286 0 1 275 2 1 226 0 1 63 328 11 114 1 5 99 0 3 137 6 8 27 2 0 237 1 5 86 15 20 170 0 5 124 0 4 17 0 5 11 6 7 64 1 0 125 9 1 24 9 10 443 1 3 145 2 0 8 chain 161078 chr2 242193529 + 62651822 62653634 L1PA4 6152 + 4334 6146 11679 1812 chain 18250 chr2 242193529 + 62719583 62719878 MER2 342 + 13 318 58411 55 0 3 5 13 20 12 9 11 29 5 4 52 1 0 114 chain 4966 chr2 242193529 + 62741822 62741896 MER2 342 + 131 210 85823 24 0 4 16 3 0 9 0 4 22 chain 17526 chr2 242193529 + 62741941 62742211 Tigger3a 397 + 43 365 59209 32 17 65 42 1 0 150 1 7 20 1 0 6 chain 146379 chr2 242193529 + 62767854 62770025 L1PREC2 3366 + 900 3037 12583 211 1 2 127 8 10 5 1 0 48 13 15 14 0 4 203 3 2 227 0 3 271 0 2 36 7 10 8 0 1 205 13 14 281 1 0 35 0 1 84 0 1 4 1 0 22 5 6 54 1 0 44 1 0 4 132 98 11 22 8 35 6 4 27 chain 554004 chr2 242193529 + 62835478 62841498 L1PA2 6032 + 0 6032 481 1039 0 3 3187 0 4 1777 0 5 17 chain 5613 chr2 242193529 + 63068774 63068840 MER33 330 + 0 66 82741 66 chain 44320 chr2 242193529 + 63097607 63098158 MER41A 554 + 0 554 31938 188 0 2 6 2 1 121 0 1 78 1 2 155 chain 4281 chr2 242193529 + 63178893 63178962 MSTA 426 + 0 74 89619 15 7 12 47 chain 4453 chr2 242193529 + 63195418 63195472 Tigger2a 444 + 0 55 88595 13 0 1 41 chain 7783 chr2 242193529 + 63200880 63200970 MSTA-int 1630 + 1536 1626 75411 90 chain 520168 chr2 242193529 + 63210476 63216721 L1PA5 6144 + 0 6143 2267 541 8 7 204 16 12 401 13 4 303 1 0 107 5 6 50 0 2 676 6 1 942 1 2 15 6 7 1437 85 0 276 1 0 304 0 4 605 2 0 168 0 1 46 4 0 22 chain 14707 chr2 242193529 + 63230989 63231152 L1PA5 6144 + 3723 3886 62670 163 chain 98611 chr2 242193529 + 63231152 63232280 L1PA5 6144 + 3954 5082 18462 1128 chain 191791 chr2 242193529 + 63278823 63281956 L1PB1 5432 + 2643 5414 10033 10 0 5 143 0 6 6 19 16 5 1 0 52 0 3 271 0 23 98 0 1 290 1 2 149 18 0 71 3 0 5 0 3 99 13 25 72 365 4 254 15 16 150 3 4 61 5 2 116 0 4 18 6 0 17 1 0 153 0 1 6 5 0 8 0 6 147 0 1 105 0 4 28 1 0 10 1 0 21 1 0 8 1 0 14 2 0 3 2 0 9 2 0 52 2 1 14 2 1 44 1 0 16 28 16 11 28 23 24 1 0 22 1 0 12 1 0 10 chain 32232 chr2 242193529 + 63286204 63286667 LTR7B 505 + 0 505 40162 108 0 10 57 0 38 12 3 27 30 0 2 2 31 0 14 0 1 64 1 0 76 14 13 51 chain 370618 chr2 242193529 + 63304285 63308890 L1PA7 6471 + 0 6459 5642 227 17 2 182 0 1 148 0 3 374 9 12 140 0 13 50 0 27 287 0 3 188 0 1808 32 0 1 20 4 8 50 0 3 58 0 2 463 2 1 568 0 4 154 1 2 121 2 0 154 1 0 11 7 12 154 0 11 283 30 11 33 2 0 68 0 1 114 0 2 582 0 2 69 chain 54486 chr2 242193529 + 63322005 63322760 LTR12D 1347 + 405 1347 28052 107 1 0 4 21 57 11 26 22 31 16 74 274 0 97 124 0 1 140 chain 47244 chr2 242193529 + 63328053 63328652 LTR12_ 688 + 0 665 30555 118 33 57 194 1 0 153 0 43 100 chain 56956 chr2 242193529 + 63333123 63333875 MER4E 760 + 0 753 27285 24 1 0 124 0 10 8 1 0 5 11 5 91 7 0 94 1 3 82 1 0 144 0 5 158 chain 43854 chr2 242193529 + 63335700 63336251 MER41A 554 + 0 554 32217 50 1 0 29 1 2 327 0 4 35 1 0 107 chain 38775 chr2 242193529 + 63349990 63350448 L1PA6 6164 + 5704 6162 35511 130 0 1 323 1 0 4 chain 92938 chr2 242193529 + 63355911 63357362 L1PA14 3548 + 410 3485 19188 51 3 0 324 5 4 238 0 5 248 6 7 5 1 0 19 4 1649 30 19 15 109 5 1 10 44 43 53 1 0 5 15 17 88 1 0 11 5 1 33 5 3 14 1 0 5 1 0 17 1 0 26 1 4 11 18 11 18 chain 460263 chr2 242193529 + 63388141 63393534 L1PA6 6164 + 0 6159 4120 88 0 735 118 0 4 310 0 1 863 0 3 203 0 2 567 4 0 196 0 1 100 1 0 81 0 5 64 0 7 444 1 0 340 0 3 227 0 4 1136 1 0 203 0 2 50 0 1 310 0 5 86 chain 64880 chr2 242193529 + 63393572 63394714 L1PA15 4387 + 3170 4327 25220 26 21 20 36 3 1 134 0 1 25 0 3 178 7 8 23 51 80 94 0 1 13 52 51 5 0 2 20 3 1 41 1 0 65 8 6 101 1 0 26 2 1 52 2 1 22 4 0 6 14 13 26 21 18 44 3 1 12 chain 115862 chr2 242193529 + 63400565 63402481 L1PA8 5853 + 4268 5853 16266 141 1 2 38 0 1 67 10 6 54 2 0 83 0 1 348 2 0 138 0 1 6 391 60 25 7 10 142 0 6 44 0 1 122 1 0 43 7 5 66 2 1 61 2 1 19 2 1 92 chain 399609 chr2 242193529 + 63409117 63414863 L1PB1 5432 + 19 5420 5158 29 10 11 485 12 15 124 0 1 37 5 19 179 0 6 85 5 15 370 22 8 10 6 5 553 0 6 125 0 3 36 1 2 104 1 0 20 6 9 119 1 3 97 1 0 346 2 1 809 0 3 9 0 3 66 0 4 211 9 10 428 1 0 4 0 1 59 309 0 50 2 0 36 0 4 90 0 1 8 2 1 165 11 11 197 1 16 75 65 0 11 1 0 24 1 0 9 16 11 9 2 0 53 2 1 16 1 0 44 2 1 14 2 0 8 17 8 15 8 5 14 2 0 23 2 1 21 1 0 13 1 0 16 chain 6903 chr2 242193529 + 63421409 63421498 L1MC 810 + 668 756 77938 62 1 0 26 chain 229762 chr2 242193529 + 63451318 63462509 L1PA5 6144 + 3355 6143 8753 574 1 4 1614 8406 0 442 3 4 83 1 0 67 chain 14993 chr2 242193529 + 63454132 63454307 L1PA6 6164 + 5782 5957 62275 175 chain 16094 chr2 242193529 + 63454307 63454510 L1PA6 6164 + 5959 6162 60901 203 chain 24586 chr2 242193529 + 63457853 63458147 AluSc 308 + 9 304 49880 19 0 1 275 chain 18129 chr2 242193529 + 63478083 63478325 L1PB1 5432 + 1709 1952 58534 47 1 0 156 1 3 37 chain 124677 chr2 242193529 + 63478332 63480058 L1PB1 5432 + 1957 3641 14749 180 0 11 229 0 4 114 29 12 22 1 0 81 0 10 40 7 1 158 1 0 15 1 0 96 7 11 73 1 0 77 9 10 154 0 24 117 69 0 245 chain 20229 chr2 242193529 + 63480086 63480348 L1PB1 5432 + 3663 3928 56103 42 0 1 28 9 11 183 chain 113021 chr2 242193529 + 63480348 63481888 L1PB1 5432 + 3929 5427 16672 697 4 0 18 1 0 123 2 0 43 1 0 10 7 8 275 13 11 24 1 0 6 1 0 14 16 10 47 11 10 11 1 0 8 7 8 29 1 0 15 24 12 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 14 1 0 4 2 0 5 chain 416222 chr2 242193529 + 63507549 63512910 L1PA7 6471 + 1419 6468 4937 1055 6 6 33 14 16 110 0 2 753 9 13 122 1 0 402 7 5 10 0 2 609 318 0 117 0 4 275 2 1 645 0 4 17 2 5 512 3 2 280 0 1 38 11 0 10 chain 12563 chr2 242193529 + 63522274 63522432 L1PA13 3608 + 1728 1886 65874 158 chain 486823 chr2 242193529 + 63530724 63536617 L1PA6 6164 + 0 5912 3496 164 14 15 15 1 2 30 24 24 259 2 1 89 4 5 117 0 1 203 16 22 223 0 1 377 0 1 175 1 3 598 0 1 198 0 1 212 1 0 201 1 2 281 1 0 84 0 1 223 1 2 1112 0 1 273 2 1 615 0 3 376 chain 23626 chr2 242193529 + 63549492 63549779 AluSg4 309 + 6 293 51389 130 0 1 108 1 0 48 chain 236423 chr2 242193529 + 63556665 63559948 L1PA10 4194 + 1079 4102 8559 440 4 7 51 0 7 28 1 0 49 5 4 101 0 1 69 1 0 183 0 13 116 1 2 74 0 1 306 1 18 6 0 7 42 1 0 12 10 7 38 0 2 13 3 7 19 318 0 24 0 4 52 0 4 506 0 6 147 0 3 12 0 1 407 14 4 209 0 1 20 chain 38728 chr2 242193529 + 63560536 63560988 L1PA6 6164 + 5709 6161 35544 452 chain 92821 chr2 242193529 + 63573308 63574374 MER11C 1089 + 0 1073 19209 567 2 1 206 0 8 291 chain 3531 chr2 242193529 + 63579865 63579913 MSTD 398 + 70 118 95006 4 1 0 4 0 1 39 chain 490908 chr2 242193529 + 63619724 63626985 L1PA7 6471 + 0 6470 3397 413 0 1 621 0 5 158 0 1 11 0 1 252 32 26 144 0 2 170 0 1 4 1 0 37 1 3 5 2 0 217 0 1 76 1163 0 245 0 4 121 0 2 112 5 0 33 0 1 337 0 3 462 12 16 281 0 1 231 0 2 411 3 1 26 0 3 311 12 0 38 0 1 18 0 2 809 1 5 12 0 8 290 36 387 148 chain 74069 chr2 242193529 + 63683869 63688051 L1MA2 4263 + 668 4114 23074 382 0 1 8 2997 2281 98 1 0 146 9 3 75 1 0 147 3 0 54 1 0 52 52 50 29 1 0 53 28 23 35 1 0 9 chain 11509 chr2 242193529 + 63688834 63689104 MSTD 398 + 72 372 67731 77 57 71 12 16 4 18 9 38 35 6 5 40 chain 138828 chr2 242193529 + 63721757 63723299 SVA_F 1814 + 0 1814 13203 697 0 80 79 1 0 24 1 0 66 0 192 39 2 0 97 1 0 523 0 5 12 chain 13560 chr2 242193529 + 63782960 63783130 L1PB4 2604 + 2111 2281 64237 170 chain 3753 chr2 242193529 + 63805795 63805836 MSTB 430 + 12 53 93213 41 chain 142493 chr2 242193529 + 63808349 63809914 SVA_D 2077 + 42 2065 12892 836 0 359 108 1 100 620 chain 486492 chr2 242193529 + 63926519 63932665 L1PA7 6471 + 5 6469 3502 192 15 14 118 41 238 154 5 15 57 1 76 156 2 1 20 1 22 13 1 4 153 0 2 920 0 5 100 1 0 367 8 0 257 7 11 597 7 0 53 0 6 16 0 1 8 0 3 1376 1 11 378 0 1 5 1 0 265 2 1 173 1 0 4 0 1 183 13 13 24 8 7 281 3 4 158 chain 3048 chr2 242193529 + 63940494 63940700 MER6B 211 - 0 186 99325 19 153 132 28 0 1 6 chain 69728 chr2 242193529 + 63988444 63989546 MER11B 1079 + 0 1079 24063 359 1 0 12 4 0 86 64 51 15 0 1 11 15 9 50 0 1 117 2 6 12 65 57 6 0 2 22 8 9 47 3 4 29 1 0 4 0 1 139 1 0 29 chain 84341 chr2 242193529 + 63990818 63995148 HERVK11-int 2540 + 678 2227 20746 59 5 0 13 14 9 4 1 0 9 2 0 21 77 41 44 3 0 12 6 5 46 2937 256 18 17 7 4 1 0 27 14 3 34 21 1 428 16 11 105 1 0 190 6 5 74 4 6 117 chain 57657 chr2 242193529 + 63996131 63997123 MER11C 1089 + 0 1067 27067 84 13 12 163 0 3 198 105 87 24 25 27 69 45 130 7 0 2 19 10 11 53 0 1 30 7 8 132 1 0 7 chain 14850 chr2 242193529 + 64031811 64031969 L1PA2 6032 + 5874 6032 62453 158 chain 22498 chr2 242193529 + 64059026 64059288 AluY 311 + 39 301 53123 262 chain 3606 chr2 242193529 + 64071429 64071519 LTR49-int 1717 + 674 765 94376 17 1 0 21 33 35 18 chain 33261 chr2 242193529 + 64075703 64076162 LTR7B 505 + 0 503 39294 105 0 10 60 15 22 28 3 27 26 0 2 39 1 2 44 1 0 23 0 1 114 chain 4077 chr2 242193529 + 64132344 64132425 Tigger4a 237 + 145 227 90913 30 0 8 11 17 10 23 chain 39301 chr2 242193529 + 64252413 64252882 LTR7 482 + 0 469 35144 56 3 1 359 15 17 36 chain 260158 chr2 242193529 + 64252897 64256174 HERVH-int 3825 + 0 3474 7966 331 0 6 152 2 0 10 35 32 39 65 0 10 1 0 24 71 0 15 0 37 42 2 1 57 0 1 6 0 2 13 0 3 819 1 5 80 4 31 1098 1 2 298 0 259 37 39 39 25 chain 38498 chr2 242193529 + 64257196 64257646 LTR7 482 + 0 482 35708 254 1 31 134 12 14 49 chain 82855 chr2 242193529 + 64352364 64354188 L1M1 2793 + 492 1884 21057 7 1 0 12 1 0 9 3 0 14 1 0 6 1 0 14 2 0 8 78 57 16 88 30 32 68 51 17 4 1 6 2 0 30 1 0 29 2 0 8 1 0 6 10 5 43 14 11 99 1 0 176 1 0 71 4 0 25 22 17 20 2 1 184 2 0 60 4 1 64 1 9 162 301 0 91 chain 18795 chr2 242193529 + 64398515 64398841 L1MB3 1562 + 1263 1555 57784 89 6 5 64 1 0 6 48 16 81 1 0 20 0 1 10 chain 10560 chr2 242193529 + 64619315 64619470 MER30 238 + 87 238 69303 19 5 0 9 2 6 78 3 0 39 chain 28372 chr2 242193529 + 64728549 64728851 AluYa5 310 + 0 301 44310 132 1 0 169 chain 39582 chr2 242193529 + 64765359 64766082 L1MA3 4352 + 3655 4322 34971 437 40 22 5 2 0 59 89 82 17 14 12 22 27 0 11 chain 42624 chr2 242193529 + 64800922 64801451 MER41A 554 + 0 534 32987 361 0 1 4 6 5 97 0 5 61 chain 519201 chr2 242193529 + 64891026 64897081 L1PA5 6144 + 0 6134 2305 267 0 1 364 9 4 349 0 3 160 1 4 13 11 5 544 0 1 193 0 1 610 0 3 165 0 3 216 0 1 263 8 0 73 7 9 149 0 1 587 0 3 43 0 11 571 0 1 76 0 42 64 0 1 190 5 0 303 4 0 63 0 29 213 0 1 93 5 5 436 chain 9287 chr2 242193529 + 64908077 64908243 MSTB 430 + 7 174 71937 17 3 2 96 34 36 16 chain 6990 chr2 242193529 + 64926590 64926675 MSTA-int 1630 + 1239 1324 77641 85 chain 20595 chr2 242193529 + 64935747 64936154 MSTB 430 + 0 417 55642 45 10 11 67 22 22 12 53 65 7 6 0 89 17 20 79 chain 3325 chr2 242193529 + 64948796 64948832 MER5A 189 + 23 59 96805 36 chain 121793 chr2 242193529 + 64968821 64970238 LTR12C 1709 + 0 1709 15212 660 0 288 146 0 1 17 1 0 5 3 1 106 0 4 244 0 1 206 0 1 29 chain 3283 chr2 242193529 + 64994756 64994860 U6 107 + 11 107 97159 26 27 29 13 18 8 20 chain 21960 chr2 242193529 + 65048501 65048844 THE1B 368 + 0 368 53896 44 23 39 88 1 0 28 34 44 125 chain 29038 chr2 242193529 + 65114561 65114874 AluYb8 318 + 0 311 43264 123 2 0 188 chain 8095 chr2 242193529 + 65114900 65115201 MSTD 398 + 84 398 74648 48 154 168 17 24 23 58 chain 22103 chr2 242193529 + 65127450 65127731 AluSp 311 + 1 286 53690 63 1 6 165 2 1 50 chain 6642 chr2 242193529 + 65154473 65154561 MER5A1 166 + 24 113 78836 57 1 2 30 chain 40776 chr2 242193529 + 65181688 65182173 THE1A-int 1579 + 5 490 34110 485 chain 31468 chr2 242193529 + 65183591 65183940 L1PA3long 6157 + 5796 6146 40760 327 0 1 22 chain 24340 chr2 242193529 + 65190736 65191028 AluY 311 + 18 311 50263 114 0 1 178 chain 20473 chr2 242193529 + 65222146 65222685 L1MA4 2864 + 2309 2809 55807 25 47 45 118 8 7 119 2 0 6 183 149 31 chain 7667 chr2 242193529 + 65290755 65290869 MER20 218 + 101 218 75713 60 1 0 5 10 14 38 chain 6885 chr2 242193529 + 65309548 65309649 MER2 342 + 220 335 78007 26 0 13 29 9 10 37 chain 24812 chr2 242193529 + 65317991 65318333 THE1B 368 + 0 367 49571 43 0 24 84 0 3 18 10 9 113 1 0 73 chain 124642 chr2 242193529 + 65338266 65339718 SVA_D 2077 + 1 2075 14756 18 1 0 18 0 4 16 1 0 626 0 556 154 20 64 158 0 1 10 4 3 294 0 20 132 chain 109794 chr2 242193529 + 65397770 65399960 L1PB1 5432 + 3848 5423 17098 421 0 1 189 1 5 7 0 4 6 1 0 118 0 1 7 5 15 343 0 14 124 693 67 50 2 1 16 1 0 44 1 0 15 1 0 4 2 0 9 7 0 17 25 20 24 2 0 4 0 1 17 1 0 12 1 0 14 1 0 5 chain 5302 chr2 242193529 + 65572165 65572286 MLT1B 390 + 27 141 84189 17 19 17 13 7 0 42 6 8 17 chain 28289 chr2 242193529 + 65659808 65660117 AluYa5 310 + 0 306 44436 97 1 0 35 2 0 174 chain 34541 chr2 242193529 + 65804536 65805023 L1MA2 4263 + 3634 4115 38328 28 1 0 37 0 1 109 3 0 64 1 8 75 11 9 93 7 0 47 1 0 10 chain 17695 chr2 242193529 + 65853074 65853280 L1PA5 6144 + 5929 6134 59014 197 1 0 8 chain 521333 chr2 242193529 + 65889690 65896399 L1PA7 6471 + 3 6470 2212 257 0 1 58 7 23 69 3 5 83 7 22 480 0 1 4 1 0 1254 0 1 109 7 9 147 304 0 106 15 0 47 3 0 415 5 9 169 0 2 120 0 3 364 0 3 72 1 0 861 1 22 236 2 0 239 0 3 207 1 2 213 4 12 71 0 1 392 8 8 114 1 0 92 6 0 6 0 6 130 0 1 18 chain 29726 chr2 242193529 + 65949092 65949410 AluYb8 318 + 0 316 42332 132 2 0 184 chain 7172 chr2 242193529 + 65996599 65996732 LTR9B 643 + 453 566 77039 14 30 16 64 6 0 19 chain 46818 chr2 242193529 + 66090583 66091117 L1PA5 6144 + 5609 6144 30721 388 1 2 145 chain 30353 chr2 242193529 + 66091122 66091562 L1PB1 5432 + 4663 5103 41710 131 36 40 59 0 1 4 1 0 11 0 4 162 8 0 28 chain 4053 chr2 242193529 + 66103731 66103775 LTR67B 553 + 61 105 91066 44 chain 548398 chr2 242193529 + 66177170 66183202 L1PA2 6032 + 0 6032 841 256 1 0 480 1 0 858 1 0 2544 0 1 373 0 1 487 0 1 1031 chain 535988 chr2 242193529 + 66206329 66212369 L1PA3long 6157 + 10 6149 1564 142 0 1 432 3 0 129 0 1 66 0 128 919 0 1 986 0 1 1129 38 0 936 0 1 423 1 6 562 1 4 125 1 0 147 chain 31871 chr2 242193529 + 66243888 66244336 LTR7 482 + 0 482 40437 98 0 2 15 0 51 14 51 0 37 12 44 221 chain 292795 chr2 242193529 + 66244338 66247963 HERVH-int 3825 + 0 3825 7049 377 0 2 153 69 0 38 1 0 10 1 0 24 29 0 15 1 0 1 0 38 30 0 2 8 2 1 56 0 1 7 0 2 13 0 3 119 0 5 778 9 33 299 0 10 819 0 7 7 7 0 7 0 2 253 8 218 169 0 1 90 0 2 225 chain 3620 chr2 242193529 + 66244881 66244928 HERVH-int 3825 + 540 585 94279 30 1 0 10 1 0 5 chain 34750 chr2 242193529 + 66249096 66249502 LTR7 482 + 0 438 38188 212 8 9 43 0 31 143 chain 3329 chr2 242193529 + 66259541 66259583 L1MD2 1676 + 864 906 96770 42 chain 4278 chr2 242193529 + 66304921 66305044 MER33 330 + 119 252 89634 4 1 0 7 0 1 26 0 12 6 11 0 8 28 37 32 chain 13068 chr2 242193529 + 66320402 66320594 Tigger4b 360 + 133 324 64989 153 7 0 8 7 13 17 chain 4943 chr2 242193529 + 66361046 66361104 MSTD 398 + 340 398 85917 58 chain 551864 chr2 242193529 + 66391130 66397150 L1PA2 6032 + 1 6032 613 588 3 0 798 0 13 2845 0 1 1786 chain 64012 chr2 242193529 + 66637060 66637858 L1P3 4156 + 3316 4107 25408 161 5 6 177 8 3 152 0 1 117 0 1 61 0 2 9 7 1 11 1 0 89 chain 20861 chr2 242193529 + 66656419 66656690 L1PREC2 3366 + 2336 2610 55298 34 0 2 23 1 2 213 chain 30121 chr2 242193529 + 66719743 66720075 L1P1 4361 + 2317 2649 41923 332 chain 118643 chr2 242193529 + 66757147 66758840 L1PA8 5853 + 4162 5853 15785 696 0 5 142 5 4 73 6 5 99 2 0 5 21 22 190 14 14 146 2 1 44 2 0 70 16 7 10 0 7 16 23 23 15 20 19 13 0 1 46 2 3 15 chain 102356 chr2 242193529 + 66796977 66798097 L1PA3long 6157 + 4145 5265 18025 1120 chain 21752 chr2 242193529 + 66815302 66815569 MSTA-int 1630 + 14 281 54169 267 chain 6024 chr2 242193529 + 66967398 66967470 MER2 342 + 138 210 80988 72 chain 92260 chr2 242193529 + 66978214 66979392 L1PA8 5853 + 4675 5847 19304 312 0 4 18 0 2 497 6 7 49 1 0 44 2 0 71 1 0 13 16 9 39 2 1 19 1 0 87 chain 54576 chr2 242193529 + 67024419 67025033 L1PA5 6144 + 5518 6132 28017 614 chain 8977 chr2 242193529 + 67057735 67057838 L1PA6 6164 + 5930 6033 72612 103 chain 47611 chr2 242193529 + 67068881 67069607 L1PA14 3548 + 2688 3393 30432 231 0 2 17 3 1 14 2 0 44 13 9 104 14 10 11 9 6 84 1 0 111 16 11 36 4 2 12 chain 25540 chr2 242193529 + 67098719 67099018 L1P1 4361 + 696 992 48424 30 3 0 266 chain 271575 chr2 242193529 + 67149198 67153475 L1MA1 4479 + 228 4157 7675 307 4 7 84 2 3 33 5 0 20 5 0 6 9 13 25 0 2 5 0 1 28 0 4 19 4 0 116 3 4 78 1 0 100 34 29 13 3 2 82 0 1 4 5 10 147 345 0 45 0 1 36 0 1 312 0 1 61 0 3 252 0 2 44 3 9 38 6 14 252 1 0 22 15 13 96 7 8 21 1 0 66 1 0 19 0 4 80 2 0 33 1 0 56 18 19 71 1 0 8 1 0 27 2 0 9 7 8 139 0 1 33 4 0 76 1 0 14 6 0 124 3 0 131 3 0 193 2 1 25 2 0 16 1 0 71 1 0 19 2 0 16 0 3 16 10 12 54 1 0 7 17 14 73 0 1 37 1 0 29 7 5 25 3 5 9 0 1 5 chain 32059 chr2 242193529 + 67162141 67162516 L1PA7 6471 + 6094 6465 40303 37 1 0 328 3 0 6 chain 3422 chr2 242193529 + 67187087 67187129 LTR16C 481 + 439 481 95890 42 chain 12282 chr2 242193529 + 67197980 67198213 Tigger3a 397 + 63 312 66313 29 56 66 103 1 7 44 chain 3284 chr2 242193529 + 67207822 67207928 MER5A1 166 + 58 165 97158 13 6 7 27 28 0 8 5 33 19 chain 330519 chr2 242193529 + 67331916 67335853 HERVH-int 3825 + 0 3825 6206 333 1 0 199 5 0 38 1 0 9 2 1 24 111 0 14 1 0 38 1 0 42 2 1 79 0 1 163 1 2 510 0 2 230 0 5 606 0 1 1527 chain 2832 chr2 242193529 + 67332556 67332632 HERVH-int 3825 + 604 676 101393 14 1 0 13 23 21 4 1 0 20 chain 27322 chr2 242193529 + 67337202 67337594 LTR7 482 + 0 475 45795 69 8 46 60 0 1 48 0 1 38 1 32 19 0 10 95 12 14 42 chain 550602 chr2 242193529 + 67356073 67362249 L1PA3long 6157 + 6 6144 700 873 0 2 168 0 2 700 0 1 156 1 2 480 45 0 438 0 1 2471 1 0 598 0 1 245 chain 38091 chr2 242193529 + 67372784 67373203 L1P1 4361 + 1978 2397 35998 419 chain 31060 chr2 242193529 + 67383396 67383729 L1PA3long 6157 + 5490 5823 41083 333 chain 29778 chr2 242193529 + 67383729 67384057 L1PA3long 6157 + 5825 6153 42262 328 chain 86560 chr2 242193529 + 67481015 67481965 L1PA3long 6157 + 5207 6157 20308 950 chain 27150 chr2 242193529 + 67504106 67504453 THE1A 353 + 0 346 46045 104 17 16 226 chain 119160 chr2 242193529 + 67507103 67508437 L1PA4 6152 + 2899 4231 15665 310 1 0 480 1 0 542 chain 10089 chr2 242193529 + 67508467 67508591 THE1D 372 + 246 370 70219 124 chain 513125 chr2 242193529 + 67588934 67595043 L1PA6 6164 + 0 6162 2615 787 0 17 116 0 4 36 0 1 445 0 1 85 7 8 792 0 1 40 0 1 310 1 3 516 0 10 9 8 9 32 1 0 173 0 1 132 0 1 949 0 7 1516 15 16 45 0 7 86 2 0 6 chain 203686 chr2 242193529 + 67654070 67656506 L1P1 4361 + 2 2408 9581 572 1 0 128 18 5 561 0 2 5 2 0 804 16 0 329 chain 222102 chr2 242193529 + 67697366 67699808 L1PA3long 6157 + 3714 6156 8981 2442 chain 17163 chr2 242193529 + 67807432 67807711 MLT2A2 560 + 0 285 59617 17 0 4 87 12 14 58 1 0 12 39 40 53 chain 259697 chr2 242193529 + 67810039 67813976 L1PB1 5432 + 19 5424 7980 29 7 6 301 7 14 17 10 1790 185 4 10 127 12 5 339 2 0 449 1 0 323 0 1 4 2 3 105 5 0 433 0 1 5 6 5 268 2 0 188 16 13 63 0 2 53 0 13 41 4 3 231 0 1 5 2 1 30 317 26 4 0 1 24 43 35 46 1 0 18 1 0 44 1 0 15 1 0 4 18 8 19 11 8 11 2 0 24 1 0 10 0 1 10 1 0 13 1 0 16 1 0 4 chain 7333 chr2 242193529 + 67828674 67828789 Tigger4a 237 - 0 208 76563 24 11 104 80 chain 4530 chr2 242193529 + 67873133 67873184 MER5A1 166 + 64 115 88164 51 chain 5499 chr2 242193529 + 67883049 67883110 MER53 195 + 131 192 83232 61 chain 37764 chr2 242193529 + 67920156 67920621 LTR10F 562 + 0 550 36233 21 0 5 109 15 96 47 1 0 272 chain 121385 chr2 242193529 + 67935214 67936671 L1PA7 6471 + 4991 6450 15280 492 0 1 132 7 6 73 9 8 433 0 1 169 0 2 142 chain 67511 chr2 242193529 + 67942541 67943576 L1PA14 3548 + 2456 3465 24563 77 7 6 23 0 2 124 1 0 33 0 1 216 3 1 14 2 0 47 2 0 5 2 0 109 4 0 17 2 0 6 1 0 83 2 1 5 0 4 73 1 2 26 1 0 11 45 39 12 9 7 14 1 0 41 6 0 10 chain 464452 chr2 242193529 + 68000507 68006925 L1PA8A 6298 + 238 6290 4008 5 1 0 15 5 0 8 2 0 33 14 13 18 8 0 78 2 0 14 16 13 76 1 0 215 22 24 58 4 0 267 25 11 55 2 0 81 1 2 144 12 7 304 0 1 376 0 1 156 0 1 91 0 1 4 1 0 50 1 0 210 4 1 6 1 0 5 0 1 169 5 4 28 0 2 141 0 1 176 2 6 20 332 0 44 16 6 31 48 4 4 1 0 10 0 45 86 2 0 6 2 0 73 0 1 304 10 11 122 3 4 188 0 9 65 6 3 281 4 2 163 1 0 233 5 2 207 19 16 270 1 0 169 2 1 502 1 2 25 1 22 249 chain 243260 chr2 242193529 + 68014925 68017886 L1PA6 6164 + 3126 6069 8398 114 0 4 13 11 4 390 0 1 42 3 0 984 0 1 50 1 0 24 0 1 14 0 1 4 22 0 74 0 3 157 4 17 291 2 0 128 16 7 381 0 1 142 5 6 89 chain 521826 chr2 242193529 + 68063790 68069895 L1PA5 6144 + 0 6144 2189 117 4 18 21 0 12 437 0 2 561 10 1 119 0 1 437 0 4 190 5 7 104 0 1 230 0 1 938 0 1 46 0 5 239 0 4 1887 1 0 424 8 10 184 0 1 95 2 1 46 chain 21193 chr2 242193529 + 68074046 68074411 THE1B 368 + 0 368 54896 73 1 15 18 3 4 64 2 1 49 17 25 57 14 13 25 18 0 24 chain 37147 chr2 242193529 + 68075444 68075929 MER84 505 + 16 505 36646 26 13 14 352 0 2 36 0 1 58 chain 40296 chr2 242193529 + 68082982 68083499 MER1A 529 + 0 529 34451 14 10 22 493 chain 6350 chr2 242193529 + 68174486 68174561 MER2 342 + 134 215 79836 10 0 6 65 chain 28968 chr2 242193529 + 68209076 68209387 AluYa5 310 + 0 310 43380 132 1 0 178 chain 265563 chr2 242193529 + 68346773 68350068 L1PA8A 6298 + 2967 6290 7810 143 0 3 238 3 4 341 3 2 177 2 4 946 9 15 554 0 9 86 2 5 74 0 2 578 11 13 14 6 0 9 2 9 97 chain 26920 chr2 242193529 + 68354646 68354948 AluY 311 + 8 311 46379 124 0 1 178 chain 516403 chr2 242193529 + 68404904 68411337 L1PA7 6471 + 1 6470 2451 85 0 1 174 3 4 65 3 0 5 6 9 55 1 0 10 1 2 31 0 4 71 10 9 4 0 1 132 0 2 325 1 0 44 19 21 207 2 1 93 0 1 247 0 1 703 4 0 85 0 1 10 0 1 81 1 0 151 2 0 602 0 4 241 1 23 552 2 1 337 0 1 87 0 1 182 0 4 199 1 0 230 1 2 6 4 0 283 0 6 204 30 34 490 5 4 69 8 12 186 10 1 72 chain 17362 chr2 242193529 + 68414223 68414442 Tigger1 2417 + 2147 2364 59402 108 2 0 109 chain 3012 chr2 242193529 + 68438809 68438843 MER81 114 + 80 114 99721 34 chain 140763 chr2 242193529 + 68508666 68510224 L1PA5 6144 + 4578 6140 13041 713 0 4 845 chain 6242 chr2 242193529 + 68533193 68533272 MSTD 398 + 271 350 80199 79 chain 104938 chr2 242193529 + 68554820 68556339 L1PB1 5432 + 3956 5420 17697 6 0 3 25 0 20 151 2 1 31 12 11 423 2 0 99 30 0 23 12 0 345 18 20 15 8 7 10 1 0 12 4 0 9 2 0 53 2 1 16 1 0 37 5 1 6 1 0 14 1 0 6 17 7 19 2 0 5 1 0 14 2 0 27 1 0 18 1 0 13 1 0 16 chain 2740 chr2 242193529 + 68584402 68584505 L2a 937 + 222 327 102042 12 1 0 10 54 57 26 chain 332920 chr2 242193529 + 68597238 68601027 L1PA5 6144 + 2258 6077 6168 906 1 0 281 0 1 56 0 1 178 0 1 228 9 3 566 0 2 436 0 27 348 1 6 779 chain 46993 chr2 242193529 + 68619971 68620759 L1PB1 5432 + 4667 5420 30665 137 2 0 8 1 4 105 2 1 181 1 2 8 4 1 24 1 0 9 1 0 9 9 5 6 2 0 50 4 2 18 1 0 44 1 0 11 18 5 30 2 0 5 30 35 7 9 0 17 4 3 10 1 0 16 chain 24265 chr2 242193529 + 68649961 68650225 L1PA2 6032 + 5764 6028 50395 264 chain 16720 chr2 242193529 + 68687878 68688212 THE1B 368 + 0 368 60130 103 9 39 27 66 71 66 23 22 40 chain 12100 chr2 242193529 + 68848548 68848803 L1PB1 5432 + 5170 5404 66664 50 6 5 12 1 0 44 1 0 10 55 41 14 3 1 23 1 0 21 1 0 13 chain 33128 chr2 242193529 + 68872511 68872953 MLT2A1 477 + 0 477 39418 171 3 0 59 0 2 151 18 54 40 chain 150068 chr2 242193529 + 68929167 68930867 L1PA6 6164 + 4455 6159 12344 863 0 4 837 chain 13916 chr2 242193529 + 68974815 68974974 L1PA8A 6298 + 6133 6292 63717 159 chain 124513 chr2 242193529 + 69004217 69005576 L1PA3long 6157 + 4783 6142 14779 1359 chain 8333 chr2 242193529 + 69182876 69182980 U6 107 + 0 104 74073 104 chain 4064 chr2 242193529 + 69201969 69202019 MER96 175 - 116 166 90993 50 chain 140421 chr2 242193529 + 69257100 69259214 L1MA3 4352 + 2217 4352 13065 31 1 0 53 0 1 11 1 17 169 1 6 67 19 10 133 1 0 8 5 4 36 0 1 223 29 31 28 3 11 35 11 16 15 0 1 278 0 1 28 8 11 129 0 3 25 13 22 165 0 1 205 0 2 56 4 8 34 37 14 7 3 0 50 5 8 23 1 8 32 5 1 25 2 0 22 1 0 5 2 1 21 8 7 11 2 0 3 2 0 22 chain 8821 chr2 242193529 + 69340470 69340600 MER85 139 + 1 139 72945 88 3 0 7 2 6 7 0 7 23 chain 28365 chr2 242193529 + 69406778 69407151 THE1C 375 + 0 372 44321 182 1 2 6 1 0 160 1 0 22 chain 23738 chr2 242193529 + 69419037 69419356 AluSq10 312 + 5 312 51216 35 0 1 134 21 8 129 chain 15285 chr2 242193529 + 69441212 69441407 LTR49-int 1717 + 163 357 61932 17 1 0 177 chain 7230 chr2 242193529 + 69449341 69449453 LTR49-int 1717 + 1461 1571 76865 67 16 14 29 chain 13037 chr2 242193529 + 69449603 69449747 L1PA4 6152 + 6002 6146 65048 144 chain 43051 chr2 242193529 + 69450782 69451417 LTR34 700 + 64 699 32744 105 5 6 74 14 16 82 0 1 69 0 1 27 1 0 92 1 0 86 12 10 25 15 14 27 chain 9097 chr2 242193529 + 69546659 69546781 MLT1A1 405 + 0 122 72353 36 0 1 15 1 0 70 chain 10111 chr2 242193529 + 69596519 69596647 Tigger1 2417 + 1435 1563 70177 128 chain 5793 chr2 242193529 + 69616096 69616353 L1MB5 1630 + 1512 1618 81958 37 1 0 12 148 0 35 6 5 13 1 0 4 chain 4126 chr2 242193529 + 69621555 69621656 MLT1H2 457 + 350 447 90613 11 2 0 5 1 0 17 33 32 32 chain 107187 chr2 242193529 + 69621900 69623328 LTR12C 1709 + 0 1709 17416 280 6 15 43 0 43 82 0 2 8 11 0 246 0 118 70 2 3 168 0 47 82 24 0 17 11 4 32 0 2 178 0 102 77 7 6 84 chain 123991 chr2 242193529 + 69654710 69656142 L1PA7 6471 + 4993 6427 14853 628 1 0 516 0 1 55 0 2 232 chain 21213 chr2 242193529 + 69672909 69673158 L1PA7 6471 + 5703 5953 54865 23 0 1 226 chain 28769 chr2 242193529 + 69673158 69673488 L1PA7 6471 + 5963 6295 43672 216 0 2 114 chain 13205 chr2 242193529 + 69673510 69673664 L1PA7 6471 + 6314 6468 64767 154 chain 23117 chr2 242193529 + 69868969 69869268 AluSp 311 + 0 301 52184 17 7 6 115 5 8 123 0 1 4 1 0 27 chain 13857 chr2 242193529 + 70008525 70008749 MER30 238 + 0 238 63788 101 12 0 12 16 44 27 0 1 5 3 0 48 chain 12248 chr2 242193529 + 70028548 70028781 MSTD 398 + 0 254 66373 108 38 58 34 22 23 31 chain 34467 chr2 242193529 + 70055322 70055736 L1PA8A 6298 + 5870 6290 38384 180 0 4 118 0 1 17 0 1 99 chain 5022 chr2 242193529 + 70081198 70081283 MER72 723 + 585 694 85554 33 2 3 12 7 30 31 chain 26470 chr2 242193529 + 70093571 70093871 AluYk4 311 + 0 299 47025 79 1 0 220 chain 138219 chr2 242193529 + 70148145 70149791 LTR12C 1709 + 0 1709 13245 145 1 24 492 9 10 147 0 40 253 1 0 5 3 1 107 0 4 139 2 0 342 chain 61489 chr2 242193529 + 70186435 70187113 L1PA3long 6157 + 5474 6157 25988 154 0 5 524 chain 4845 chr2 242193529 + 70268109 70268162 MLT1D 503 + 434 487 86458 53 chain 276205 chr2 242193529 + 70404014 70408922 L1PB1 5432 + 19 5392 7540 50 4 5 8 0 1 57 0 1 118 7 743 393 1 0 7 4 0 3 3 0 195 0 2 5 0 1 166 536 920 146 1 2 63 3 4 234 2 11 64 0 3 474 347 0 32 4 7 84 0 1 243 0 5 137 0 2 147 0 2 104 310 2 24 26 21 99 0 4 20 0 2 184 1 0 264 0 4 20 1 2 11 7 0 18 1 0 13 20 15 6 2 0 52 2 1 16 1 0 44 1 0 15 2 0 9 5 1 13 20 17 10 2 0 24 1 0 22 chain 22222 chr2 242193529 + 70431166 70431415 L1PA2 6032 + 5783 6032 53520 249 chain 4371 chr2 242193529 + 70477550 70477597 MLT1J2 417 + 60 107 89050 47 chain 54172 chr2 242193529 + 70502983 70503584 L1PA4 6152 + 5550 6152 28161 488 0 1 113 chain 29247 chr2 242193529 + 70555924 70556236 AluYa5 310 + 0 310 42969 132 2 0 178 chain 4378 chr2 242193529 + 70562025 70562081 MLT1H2 457 + 57 113 89011 56 chain 52259 chr2 242193529 + 70595223 70595893 L1PA8 5853 + 5185 5853 28800 379 1 0 43 12 10 65 1 0 4 1 0 23 0 4 27 2 1 11 10 9 75 0 1 16 chain 66176 chr2 242193529 + 70600615 70601357 L1PA5 6144 + 5395 6138 24915 222 0 1 520 chain 14098 chr2 242193529 + 70605649 70605824 Tigger3a 397 + 158 333 63459 175 chain 305561 chr2 242193529 + 70620899 70624754 HERVH-int 3825 + 0 3825 6707 531 1 0 10 1 0 4 0 1 24 1 0 10 1 0 8 62 0 16 154 0 15 1 0 11 7 45 23 2 1 57 0 1 6 0 2 14 0 1 649 9 0 29 0 2 9 1 0 216 4 31 563 0 1 805 0 19 471 0 110 140 chain 4219 chr2 242193529 + 70621490 70621551 HERVH-int 3825 + 475 530 79080 4 5 0 19 1 0 32 chain 5110 chr2 242193529 + 70621648 70621719 HERVH-int 3825 + 652 721 85110 4 1 0 41 1 0 24 chain 3439 chr2 242193529 + 70654612 70654649 MER44B 551 + 73 110 95750 37 chain 8369 chr2 242193529 + 70667517 70667624 MLT2B2 565 + 0 107 73976 16 1 0 19 0 1 71 chain 3939 chr2 242193529 + 70685531 70685617 MIR 256 + 44 136 91837 39 19 22 6 2 0 13 0 5 7 chain 24980 chr2 242193529 + 70725943 70726215 AluYa5 310 + 38 310 49316 272 chain 64604 chr2 242193529 + 70737024 70737729 L1PA5 6144 + 5433 6138 25291 705 chain 5168 chr2 242193529 + 70738828 70738908 L1PREC2 3366 + 2973 3051 84829 33 6 4 41 chain 2889 chr2 242193529 + 70781290 70781337 L1MC4 1079 + 86 134 100934 20 5 6 22 chain 524767 chr2 242193529 + 70842202 70848320 L1PA6 6164 + 0 6161 2063 187 0 1 87 0 2 290 1 0 220 0 17 89 0 10 41 6 0 36 3 14 458 1 0 697 1 0 184 6 7 11 8 0 829 1 2 277 0 1 14 0 7 881 0 4 307 1 0 642 0 6 7 0 1 624 1 2 199 2 0 7 chain 41226 chr2 242193529 + 70872514 70873012 MER9a2 513 + 0 513 33826 212 5 24 27 0 1 60 1 0 122 4 0 67 chain 515372 chr2 242193529 + 70875913 70882083 L1PA6 6164 + 8 6162 2499 155 0 8 65 0 2 135 1 2 139 22 24 29 1 0 552 6 5 174 7 8 147 0 1 417 0 1 457 10 0 860 3 4 70 1 5 594 37 0 67 0 1 931 4 4 7 0 9 848 0 2 101 1 0 301 0 1 19 0 1 4 1 0 4 chain 25593 chr2 242193529 + 70882084 70882408 Tigger1 2417 + 1734 2057 48334 142 6 5 176 chain 354797 chr2 242193529 + 71020399 71024471 HERVE-int 4064 + 0 4064 5858 48 1 0 4 0 1 336 2 0 161 0 1 56 0 1 203 3 0 22 2 1 699 1 2 386 14 7 283 3 0 1186 0 10 33 4 0 37 1 0 587 chain 240453 chr2 242193529 + 71046888 71049837 HERVE-int 4064 + 0 3287 8462 355 2 9 73 8 0 373 4 1 50 1 0 483 5 25 77 2 1 86 26 1 130 5 368 338 11 5 631 8 0 281 chain 64523 chr2 242193529 + 71049846 71050605 HERVE-int 4064 + 3308 4064 25305 99 2 0 66 1 0 591 chain 3349 chr2 242193529 + 71057657 71057700 L1MA4 2864 + 2573 2616 96604 43 chain 5150 chr2 242193529 + 71075012 71075102 MER103C 291 + 71 176 84907 20 1 0 4 12 28 53 chain 20985 chr2 242193529 + 71084725 71085053 MER51B 395 + 0 385 55146 40 7 26 31 0 6 48 1 2 75 8 23 45 6 22 67 chain 16123 chr2 242193529 + 71115724 71115971 L1PA7 6471 + 6218 6465 60868 68 7 9 25 20 22 64 1 0 52 3 0 7 chain 140719 chr2 242193529 + 71160474 71162089 SVA_D 2077 + 55 2072 13044 508 0 40 88 0 40 46 40 0 107 0 83 36 0 178 117 0 3 10 1 99 662 chain 12789 chr2 242193529 + 71192273 71192456 Tigger1 2417 + 54 243 65458 56 0 1 5 2 1 16 3 9 101 chain 5570 chr2 242193529 + 71198983 71199054 Tigger1 2417 + 1879 1947 82937 34 3 0 34 chain 33364 chr2 242193529 + 71221753 71222204 LTR12F 595 + 0 595 39204 56 0 2 14 0 143 118 1 0 57 24 24 181 chain 46286 chr2 242193529 + 71275065 71275687 L1PA8 5853 + 5233 5847 30928 94 0 1 155 2 1 80 2 1 39 7 5 69 13 10 52 2 1 19 1 0 87 chain 250454 chr2 242193529 + 71390940 71395356 HERVK22-int 3844 + 8 3844 8219 32 3 0 99 1 4 90 0 2 55 0 1 337 0 14 9 0 1 533 1 0 13 50 55 300 8 17 98 1 6 145 8 13 107 13 14 126 0 3 133 1 7 59 0 2 226 1 0 276 0 6 129 1 0 21 8 9 90 1 17 36 1 2 49 1 0 24 11 10 20 2 0 39 19 14 16 0 1 24 159 120 18 11 7 29 1 0 4 797 193 87 1 0 81 0 2 11 chain 81890 chr2 242193529 + 71444433 71445593 MER11A 1151 + 0 1151 21268 79 0 8 143 0 4 60 0 11 11 35 0 50 5 7 17 0 1 29 3 0 129 0 5 5 6 0 9 2 0 107 1 0 144 0 1 42 3 0 12 36 0 11 0 35 74 0 1 75 0 5 32 0 4 40 chain 2034 chr2 242193529 + 71444736 71444759 MER11A 1151 + 328 351 106134 23 chain 66342 chr2 242193529 + 71653084 71653812 L1PA4 6152 + 5415 6143 24861 728 chain 91611 chr2 242193529 + 71739997 71741158 L1PA11 4918 + 2883 4053 19394 296 1 3 242 19 27 215 2 1 386 chain 10608 chr2 242193529 + 71757973 71758151 MER2 342 + 144 319 69214 9 1 0 125 29 27 14 chain 4783 chr2 242193529 + 71759448 71759759 L1MD2 1676 + 571 869 86775 30 3 0 7 148 153 19 8 0 16 35 34 22 1 0 6 6 1 10 chain 5086 chr2 242193529 + 71900388 71900449 MIR 256 + 91 152 85214 61 chain 227961 chr2 242193529 + 71979740 71983068 L1PB3 3668 + 158 3620 8810 17 0 2 5 3 1 136 21 22 131 1 0 9 3 4 347 0 227 106 0 1 39 3 0 20 1 3 44 0 3 36 5 6 79 21 0 291 12 17 329 20 17 8 0 3 50 73 12 111 0 1 80 6 5 156 6 0 115 1 0 11 0 12 51 1 0 139 6 7 60 0 1 57 1 0 55 1 3 20 4 7 276 1 0 101 1 0 87 21 5 18 5 3 24 3 1 37 7 3 13 1 0 13 7 4 14 1 0 7 chain 6813 chr2 242193529 + 71999766 71999870 MER45A 178 + 65 170 78270 56 10 11 38 chain 28762 chr2 242193529 + 72051100 72051693 MER4A 717 + 0 709 43687 91 0 1 31 12 7 24 27 69 102 1 12 23 6 12 8 0 4 11 11 6 34 1 3 32 116 176 63 chain 554535 chr2 242193529 + 72063975 72069997 L1PA2 6032 + 0 6032 446 185 0 1 511 0 7 2307 0 5 2553 0 2 296 5 0 165 chain 2956 chr2 242193529 + 72081158 72081195 MER52A 1651 + 789 840 100316 20 0 14 17 chain 102495 chr2 242193529 + 72086706 72088019 LTR12C 1709 + 0 1709 18010 104 5 4 103 0 9 89 0 1 4 1 0 334 0 485 91 0 4 212 101 0 269 chain 3905 chr2 242193529 + 72087708 72087750 LTR12C 1709 + 1397 1439 91464 42 chain 87417 chr2 242193529 + 72111328 72112417 MER11B 1079 + 0 1079 20152 259 3 0 413 1 0 48 1 0 52 6 0 170 1 0 114 0 2 21 chain 4975 chr2 242193529 + 72121655 72121734 L1MD 993 + 490 569 85779 17 1 0 33 6 7 22 chain 2897 chr2 242193529 + 72125410 72125560 L1MD2 1676 + 1451 1599 100859 18 103 101 29 chain 56348 chr2 242193529 + 72216234 72216924 L1PA8A 6298 + 5510 6203 27473 162 0 2 228 1 2 299 chain 52828 chr2 242193529 + 72234399 72235258 L1PA15 4387 + 3506 4356 28635 84 0 2 16 2 1 130 0 2 72 2 7 13 5 1 30 0 1 15 14 12 13 13 22 5 1 0 22 0 3 46 6 0 127 12 11 46 1 0 12 12 8 10 1 0 50 6 3 44 3 1 14 5 0 27 chain 32870 chr2 242193529 + 72252975 72253555 L1PA15 4387 + 3785 4356 39614 7 0 2 16 8 10 42 0 4 25 3 1 41 4 3 18 0 3 147 9 8 19 1 0 54 1 0 18 20 15 49 16 14 33 3 1 9 10 5 27 chain 22942 chr2 242193529 + 72264964 72267818 THE1D-int 1627 + 1 375 52459 10 2 1 12 1 0 97 3 4 140 2505 26 84 chain 118111 chr2 242193529 + 72322605 72323988 L1PA7 6471 + 5075 6464 15870 484 0 2 33 0 5 22 1 0 124 1 0 562 1 2 155 chain 3453 chr2 242193529 + 72357371 72357409 Tigger3b 1229 + 44 82 95628 38 chain 250322 chr2 242193529 + 72368166 72371003 L1PA5 6144 + 3283 6138 8224 1058 0 4 640 0 1 1023 0 13 116 chain 23835 chr2 242193529 + 72372856 72374301 L1MA2 4263 + 3153 4023 51046 129 2 0 60 1045 485 48 15 9 63 5 0 9 11 9 58 chain 7051 chr2 242193529 + 72401687 72401773 L1PB4 2604 + 2407 2493 77431 86 chain 524465 chr2 242193529 + 72403730 72409697 L1PA4 6152 + 7 5971 2070 701 0 1 535 0 1 177 0 5 1738 1 0 69 12 2 542 0 1 2192 chain 141283 chr2 242193529 + 72421645 72423391 LTR12C 1709 + 0 1709 13002 260 0 1 221 0 1 179 1 0 15 2 1 159 1 0 15 78 0 117 0 41 101 1 0 6 2 0 107 0 4 481 chain 4391 chr2 242193529 + 72422498 72422576 LTR12C 1709 + 734 812 47797 78 chain 20295 chr2 242193529 + 72440584 72440962 L1PREC2 3366 + 139 497 56022 31 1 0 9 6 5 15 8 3 7 1 0 11 1 0 13 1 0 12 1 0 12 2 0 33 13 12 102 1 0 61 13 8 24 chain 208092 chr2 242193529 + 72459070 72461355 L1PA3long 6157 + 3859 6144 9419 87 0 1 1124 1 0 1073 chain 26759 chr2 242193529 + 72540991 72541347 THE1A 353 + 0 353 46603 105 6 5 168 1 0 38 1 0 37 chain 45821 chr2 242193529 + 72586788 72587403 L1PA16 3655 + 2972 3578 31150 8 4 0 221 1 0 77 15 13 77 3 1 41 0 1 6 1 0 161 chain 5130 chr2 242193529 + 72609462 72609529 SVA_E 1901 + 1839 1901 85020 55 5 0 7 chain 426320 chr2 242193529 + 72641097 72647961 L1P2 5180 + 2 5175 4795 61 1 2 85 1 0 26 7 9 9 1 0 53 6 5 209 1 0 49 6 5 98 0 1 173 1 0 6 1 0 245 1710 0 152 1 4 395 0 9 609 0 2 118 6 3 454 2 1 404 1 0 396 8 0 177 0 1 484 0 16 86 0 8 282 1 0 32 2 1 413 5 4 47 1 0 39 chain 148549 chr2 242193529 + 72642145 72643763 L1PA3long 6157 + 4527 6147 12451 859 0 2 759 chain 46002 chr2 242193529 + 72653070 72653566 L1PA3long 6157 + 5661 6157 31063 496 chain 136539 chr2 242193529 + 72703965 72705447 L1PA2 6032 + 2503 3987 13386 1266 0 2 216 chain 8729 chr2 242193529 + 72726907 72727038 MER2 342 + 139 271 73145 65 12 13 54 chain 13136 chr2 242193529 + 72730191 72730546 MLT2D 439 + 4 356 64872 28 11 12 124 158 154 34 chain 17146 chr2 242193529 + 72744007 72744232 Tigger3a 397 + 126 359 59640 35 0 10 116 2 0 72 chain 3707 chr2 242193529 + 72749455 72749508 MADE1 96 + 2 53 93561 28 0 1 16 3 0 6 chain 3207 chr2 242193529 + 72749515 72749597 MADE1 96 - 13 95 97817 15 18 0 13 7 25 29 chain 9797 chr2 242193529 + 72807544 72807700 L1MA2 4263 + 3957 4105 70823 9 1 0 92 19 12 35 chain 9467 chr2 242193529 + 72823799 72823939 MER2 342 + 80 220 71565 22 1 0 7 5 6 105 chain 3371 chr2 242193529 + 72975837 72975874 Kanga11a 569 + 166 203 96390 37 chain 15637 chr2 242193529 + 73027966 73028238 Tigger3b 1229 + 941 1229 61488 39 0 10 21 2 7 141 51 52 18 chain 2874 chr2 242193529 + 73028477 73028555 MER45C 884 + 671 748 101052 18 35 34 25 chain 134731 chr2 242193529 + 73180744 73182247 L1PA5 6144 + 4637 6140 13564 439 0 3 1052 3 0 9 chain 4857 chr2 242193529 + 73298683 73298741 U6 107 + 1 59 86384 58 chain 13319 chr2 242193529 + 73411051 73411463 MLT1C 463 + 32 462 64590 46 51 59 26 151 162 13 6 5 119 chain 6178 chr2 242193529 + 73446794 73446871 MER5A1 166 + 49 127 80436 35 0 1 42 chain 540150 chr2 242193529 + 73460454 73466651 L1PA4 6152 + 2 6151 1331 840 17 0 59 1 0 334 1 2 69 0 1 4 1 0 367 1 0 1069 0 1 9 0 5 462 0 6 309 0 1 897 0 1 169 43 1 690 0 4 227 0 1 467 7 0 154 chain 23863 chr2 242193529 + 73521460 73521765 AluY 311 + 6 297 51009 127 14 1 147 1 0 16 chain 533496 chr2 242193529 + 73538405 73544512 L1PA4 6152 + 7 6139 1681 928 0 9 509 0 4 343 0 2 272 4 0 459 5 7 595 0 5 893 1 0 25 0 6 575 1 0 735 3 5 256 1 0 330 0 1 145 0 1 27 chain 38847 chr2 242193529 + 73587731 73588217 L1PB2 3958 + 1282 1770 35470 293 2 0 110 0 4 81 chain 19727 chr2 242193529 + 73615708 73616074 THE1D 372 + 0 357 56755 52 9 0 24 6 8 49 1 5 25 23 24 6 1 0 16 35 29 119 chain 32669 chr2 242193529 + 73656919 73657273 L1PA2 6032 + 5675 6029 39787 354 chain 12580 chr2 242193529 + 73682431 73682858 THE1B 368 + 0 194 65828 36 235 0 86 1 4 43 2 0 5 3 5 5 1 0 10 chain 3049 chr2 242193529 + 73721358 73721393 MER67C 710 + 26 61 99320 35 chain 556415 chr2 242193529 + 73721402 73727531 L1PA3long 6157 + 6 6157 337 689 5 0 55 3 0 886 0 1 870 0 12 1837 1 9 274 1 2 445 0 1 223 0 4 72 0 2 764 0 1 4 chain 30151 chr2 242193529 + 73745730 73746077 L1PA5 6144 + 5728 6075 41887 347 chain 79310 chr2 242193529 + 73753750 73754758 LTR13 1007 + 1 1007 21779 72 2 0 175 5 1 132 4 5 148 2 0 94 2 1 71 0 3 205 0 5 48 0 2 6 2 0 6 3 1 31 chain 10490 chr2 242193529 + 73777781 73778213 MER20B 722 + 201 696 69436 4 1 0 41 10 9 24 176 240 44 10 12 18 46 46 31 1 0 26 chain 12135 chr2 242193529 + 73841520 73841689 MER30B 195 + 0 195 66597 61 2 28 7 2 0 12 0 2 85 chain 22723 chr2 242193529 + 73867268 73867548 AluSp 311 + 1 288 52798 35 0 5 222 0 2 23 chain 108306 chr2 242193529 + 74123571 74124936 SVA_B 1603 + 335 1598 17280 130 3 1 439 94 0 16 4 0 12 1 0 30 4 0 12 3 1 14 1 0 40 3 0 135 0 6 31 0 3 393 chain 13697 chr2 242193529 + 74136370 74136574 MER30 238 + 0 238 64018 24 5 23 61 4 0 8 2 22 100 chain 2902 chr2 242193529 + 74169976 74170032 Charlie1b 519 + 463 519 100835 12 1 0 10 6 7 27 chain 28142 chr2 242193529 + 74173669 74173974 AluYg6 310 + 1 306 44649 305 chain 17683 chr2 242193529 + 74306088 74306553 LTR19A 502 + 0 502 59027 24 3 0 10 5 4 101 141 0 14 35 217 60 7 5 49 2 0 5 0 4 9 chain 27320 chr2 242193529 + 74318026 74318402 L1PB4 2604 + 1703 2080 45800 108 22 22 146 0 1 100 chain 28205 chr2 242193529 + 74382790 74383094 AluYb8 318 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14 77 0 4 48 1 0 46 0 1 4 1 0 47 3 2 83 24 8 18 1 0 3 1 0 25 10 8 29 chain 3193 chr2 242193529 + 74809810 74809844 MLT2D 439 + 110 144 97953 34 chain 11473 chr2 242193529 + 74830950 74831124 MER66B 489 + 162 337 67786 21 10 14 54 1 0 37 1 0 27 1 0 22 chain 10634 chr2 242193529 + 74867166 74867403 L1PB1 5432 + 5111 5319 69160 6 5 0 21 1 0 4 5 4 11 6 2 8 2 0 53 2 1 16 2 1 43 1 0 15 13 1 18 1 0 4 chain 44509 chr2 242193529 + 74954697 74955241 MER41A 554 + 13 554 31822 181 3 0 360 chain 13655 chr2 242193529 + 74960770 74961057 Tigger3a 397 + 35 332 64080 57 40 43 38 9 15 52 33 34 58 chain 232934 chr2 242193529 + 74986883 74989588 L1PA6 6164 + 3411 6162 8666 45 0 19 153 0 2 235 0 2 98 0 11 204 1 2 289 0 8 373 0 2 194 1 0 854 1 2 92 0 1 165 chain 22267 chr2 242193529 + 75150319 75150660 THE1A 353 + 6 343 53454 53 9 11 40 1 0 102 28 24 85 2 1 21 chain 127242 chr2 242193529 + 75150671 75152223 THE1A-int 1579 + 1 1558 14392 97 1 0 71 2 1 5 0 1 932 5 4 171 2 3 28 0 6 238 chain 24902 chr2 242193529 + 75152244 75152597 THE1A 353 + 0 353 49427 110 1 0 123 29 30 90 chain 115993 chr2 242193529 + 75170461 75171991 THE1B-int 1605 + 0 1575 16237 113 0 3 56 2 0 258 38 21 47 10 30 227 0 9 194 1 2 30 4 5 14 13 14 68 0 3 48 0 4 121 0 22 286 chain 3416 chr2 242193529 + 75225350 75225394 MER5A 189 + 64 108 95929 44 chain 2501 chr2 242193529 + 75258391 75258417 LTR9B 643 + 304 330 103646 26 chain 44025 chr2 242193529 + 75289104 75289656 MER41A 554 + 0 554 32113 314 1 0 11 0 1 73 5 7 148 chain 288929 chr2 242193529 + 75329135 75332322 L1PA3long 6157 + 2968 6156 7163 2814 0 1 373 chain 150168 chr2 242193529 + 75397173 75399706 L1PB2 3958 + 1703 3815 12336 141 1 2 15 5 7 278 0 1 143 37 0 157 3 4 11 0 1 21 0 1 12 8 5 124 9 10 36 0 5 70 1 3 30 0 2 7 16 0 133 6 5 99 0 2 154 375 13 4 0 1 107 2 0 56 1 0 11 6 0 65 2 0 12 4 0 94 1 0 72 1 0 17 1 0 48 1 0 11 0 3 6 7 4 47 2 0 21 2 1 40 chain 27682 chr2 242193529 + 75430695 75431087 LTR7 482 + 0 476 45346 86 0 50 88 0 1 16 23 54 12 0 1 22 3 2 120 0 2 22 chain 179123 chr2 242193529 + 75433736 75435969 L1PA8 5853 + 3603 5847 10627 57 8 7 325 0 2 101 0 1 238 1 0 162 4 0 423 0 1 82 2 0 7 2 0 75 0 2 7 3 5 38 0 1 113 0 18 296 1 0 44 2 0 70 2 1 61 2 1 19 1 0 87 chain 20832 chr2 242193529 + 75448143 75448427 AluSp 311 + 8 294 55324 15 0 1 67 0 3 44 7 4 8 0 3 125 6 4 12 chain 38060 chr2 242193529 + 75459464 75459926 LTR2 463 + 0 463 36025 359 15 16 88 chain 3367 chr2 242193529 + 75504636 75504674 L1PA8 5853 + 5526 5564 96405 38 chain 9152 chr2 242193529 + 75504675 75504785 L1PA8 5853 + 5564 5677 72227 46 2 0 56 0 5 6 chain 5779 chr2 242193529 + 75504785 75504866 L1PA8 5853 + 5679 5758 82013 9 1 0 52 2 1 17 chain 7860 chr2 242193529 + 75504870 75504962 L1PA8 5853 + 5761 5853 75226 92 chain 79520 chr2 242193529 + 75507863 75508877 MER11C 1089 + 0 1063 21737 235 0 2 9 0 9 62 0 4 65 1 0 146 31 63 54 6 5 18 1 0 18 0 4 5 1 0 38 0 1 127 0 1 197 chain 135652 chr2 242193529 + 75529204 75531201 L1PB1 5432 + 1771 3763 13470 497 28 32 136 35 34 20 4 0 8 1 0 241 99 95 164 8 9 96 6 5 365 0 1 102 0 1 155 8 7 24 chain 28165 chr2 242193529 + 75541925 75542291 THE1B 368 + 0 368 44609 13 2 0 27 0 5 127 2 1 195 chain 224141 chr2 242193529 + 75681136 75684565 L1P2 5180 + 2 3080 8923 148 1 0 53 50 49 66 29 0 5 154 0 31 22 0 3 5 0 89 19 0 59 12 2 8 1 0 27 98 23 168 34 13 30 7 22 246 0 1 4 1 0 22 32 35 341 0 2 878 35 6 145 6 1 464 0 1 136 chain 49068 chr2 242193529 + 75684565 75685209 L1PA7 6471 + 5819 6461 29924 20 4 5 139 8 7 174 6 0 111 0 2 28 3 4 77 0 1 74 chain 105186 chr2 242193529 + 75711614 75712878 LTR12C 1709 + 222 1709 17662 43 1 2 452 0 118 238 0 2 34 1 0 5 3 1 107 0 4 168 0 102 44 1 0 167 chain 106778 chr2 242193529 + 75724617 75725805 SVA_D 2077 + 58 2077 17460 312 0 15 325 0 818 537 2 0 12 chain 51241 chr2 242193529 + 75777951 75778711 L1PA11 4918 + 3738 4508 29150 433 11 33 119 3 0 64 23 19 52 35 30 20 chain 3077 chr2 242193529 + 75791435 75791473 MER5B 177 + 74 112 99000 38 chain 58434 chr2 242193529 + 75806004 75806677 L1PA7 6471 + 5790 6465 26830 66 0 3 278 1 0 328 chain 3847 chr2 242193529 + 75831187 75831245 MIR 256 + 127 179 92518 16 6 0 36 chain 510563 chr2 242193529 + 75833937 75840162 L1PA7 6471 + 245 6467 2743 160 1 2 353 0 1 387 0 2 85 0 4 69 0 1 163 0 13 590 19 17 544 7 8 461 0 2 288 0 5 66 0 1 4 1 0 19 1 0 7 1 0 52 0 4 178 1 0 101 1 0 647 0 3 152 0 1 665 33 5 294 0 1 20 1 0 431 1 0 272 0 1 137 7 0 6 chain 63685 chr2 242193529 + 75871689 75872461 LTR17 781 + 0 781 25481 119 0 9 199 0 1 296 2 0 149 0 1 7 chain 365947 chr2 242193529 + 75874105 75878417 HERV17-int 4347 + 12 4347 5725 15 1 0 53 1 0 32 2 0 26 2 1 158 6 0 71 0 9 220 1 0 78 1 2 81 0 3 384 0 3 138 0 2 130 1 0 136 0 2 262 1 0 1103 0 1 273 1 12 413 21 16 90 0 4 227 0 5 207 0 1 177 chain 59248 chr2 242193529 + 75878731 75879498 LTR17 781 + 0 781 26589 119 0 9 54 0 3 61 0 11 42 10 0 28 0 1 387 22 0 17 8 30 19 chain 17811 chr2 242193529 + 75882866 75883149 MLT1-int 490 + 85 369 58879 81 1 0 47 38 40 116 chain 27548 chr2 242193529 + 75900601 75900897 AluYa5 310 + 1 295 45514 131 2 0 163 chain 27822 chr2 242193529 + 75909874 75910169 AluYg6 310 + 0 295 45156 295 chain 16020 chr2 242193529 + 75929476 75929645 AluYa5 310 + 140 309 61005 169 chain 58035 chr2 242193529 + 75976778 75977785 L1PB1 5432 + 4447 5412 26950 66 0 5 103 3 0 91 10 11 81 21 31 141 2 1 10 9 0 7 4 3 82 0 4 20 1 2 8 4 1 11 10 9 12 1 0 12 26 20 42 2 1 60 1 0 15 1 0 6 26 12 13 2 0 5 1 0 14 2 0 24 1 0 21 14 0 13 1 0 8 chain 34924 chr2 242193529 + 75979149 75979545 L1PA7 6471 + 6067 6463 38073 396 chain 10153 chr2 242193529 + 75993225 75993370 L1PA8 5853 + 5710 5853 70098 29 3 2 19 1 0 93 chain 185303 chr2 242193529 + 76002811 76004881 L1PA3long 6157 + 4081 6157 10324 1371 0 1 231 0 1 217 0 4 97 8 1 8 0 7 138 chain 3536 chr2 242193529 + 76046371 76046427 L1M1 2793 + 2630 2685 94966 38 6 5 12 chain 58096 chr2 242193529 + 76127772 76128415 L1PA5 6144 + 4345 4987 26935 283 1 0 359 chain 74502 chr2 242193529 + 76213261 76214425 L1PB1 5432 + 4277 5427 22962 23 0 1 68 0 10 250 2 0 178 1 3 7 3 0 82 0 2 237 1 0 6 1 0 14 5 1 9 10 8 43 1 0 18 4 3 18 18 25 13 50 36 14 2 0 24 1 0 22 1 0 12 1 0 18 2 0 5 chain 3944 chr2 242193529 + 76251096 76251139 MLT2B2 565 + 446 489 91806 43 chain 74918 chr2 242193529 + 76300973 76301768 L1HS 6032 + 3684 4479 22863 795 chain 36136 chr2 242193529 + 76326238 76326729 MLT2A1 477 + 0 477 37320 140 1 2 27 0 4 21 1 0 10 1 0 181 1 0 11 6 0 7 16 9 5 2 0 41 1 0 19 chain 40674 chr2 242193529 + 76363706 76364242 MLT2A2 560 + 0 560 34167 140 17 32 31 0 1 89 0 4 251 0 4 8 chain 11372 chr2 242193529 + 76410128 76410262 THE1B-int 1605 + 1456 1590 67969 134 chain 18182 chr2 242193529 + 76415486 76415743 MER50B 698 + 394 654 58482 80 15 14 47 1 0 39 0 5 75 chain 3213 chr2 242193529 + 76466355 76466395 MER5B 177 + 8 48 97773 40 chain 7999 chr2 242193529 + 76476937 76477046 MER51-int 1546 + 75 183 74891 73 2 1 34 chain 51477 chr2 242193529 + 76592166 76592736 L1PA3long 6157 + 3630 4200 29059 570 chain 31814 chr2 242193529 + 76594793 76595273 MLT2A2 560 + 0 510 40483 115 10 14 28 2 0 8 17 33 201 28 39 51 0 1 20 chain 140983 chr2 242193529 + 76596619 76598412 HERVL-int 5654 + 1886 4504 13027 216 0 3 53 4 5 69 3 21 12 40 1 30 0 1 276 0 1 604 0 839 152 0 1 334 chain 48382 chr2 242193529 + 76634490 76635095 PABL_A 660 + 0 660 30157 84 0 9 80 0 39 421 0 7 20 chain 29632 chr2 242193529 + 76677035 76677360 L1PA2 6032 + 5706 6031 42452 325 chain 518018 chr2 242193529 + 76795804 76801677 L1PA2 6032 + 2 6032 2367 115 0 1 133 6 5 61 1 0 390 7 14 177 1 0 44 1 0 4 0 1 53 0 13 20 0 174 76 0 9 1118 0 16 2843 59 0 275 1 0 488 chain 48299 chr2 242193529 + 76837566 76838094 L1PA3long 6157 + 5627 6155 30182 528 chain 61528 chr2 242193529 + 76840765 76841435 L1PA4 6152 + 5481 6151 25977 670 chain 25187 chr2 242193529 + 76866882 76867233 L1PA8 5853 + 5507 5853 48971 57 1 0 44 2 0 69 10 11 8 1 0 48 2 1 15 1 0 93 chain 472186 chr2 242193529 + 76904981 76910258 L1PA3long 6157 + 624 5909 3807 74 1 8 9 8 0 475 0 3 123 0 1 1323 0 4 299 0 1 1000 0 1 1439 1 0 525 chain 6040 chr2 242193529 + 76924670 76924741 Tigger9b 617 + 100 171 80928 71 chain 50867 chr2 242193529 + 76935975 76936596 L1PA7 6471 + 5846 6470 29251 107 0 1 252 1 2 99 3 4 159 chain 75102 chr2 242193529 + 77055375 77056195 L1PA3long 6157 + 5332 6152 22818 820 chain 43035 chr2 242193529 + 77068730 77069238 MER9a2 513 + 0 509 32751 424 0 1 84 chain 38168 chr2 242193529 + 77088246 77088674 LTR7 482 + 23 482 35932 240 1 32 187 chain 298050 chr2 242193529 + 77088676 77092415 HERVH-int 3825 + 0 3825 6887 502 61 0 29 4 0 38 1 3 8 1 0 9 69 15 15 1 0 12 3 0 7 21 0 15 21 0 45 0 20 11 2 1 49 1 0 36 0 1 407 15 0 218 0 1 243 4 31 297 1 11 906 4 0 190 8 218 260 0 2 225 chain 32050 chr2 242193529 + 77093666 77094030 LTR7 482 + 0 397 40308 264 0 31 91 0 2 9 chain 480615 chr2 242193529 + 77136023 77141617 L1PA5 6144 + 0 6130 3619 89 0 525 393 0 1 671 0 1 125 0 1 884 0 3 284 0 1 89 8 7 601 1 0 258 0 1 28 4 0 183 0 4 337 2 1 4 0 1 799 0 4 515 0 1 319 chain 498102 chr2 242193529 + 77161907 77167949 L1PA5 6144 + 0 6132 3201 121 0 14 24 0 52 315 5 4 134 1 2 360 1 0 4 1 3 124 21 12 273 0 1 135 0 1 200 4 21 510 1 0 192 0 1 68 0 1 159 4 0 444 0 1 343 4 5 112 4 5 33 1 3 300 1 0 275 0 3 128 0 1 94 0 2 50 36 36 725 0 4 52 0 1 623 1 2 159 chain 58492 chr2 242193529 + 77181811 77182533 L1PA8A 6298 + 5570 6290 26816 535 3 0 75 5 6 104 chain 58031 chr2 242193529 + 77183410 77184084 L1PA4 6152 + 5470 6142 26952 348 3 2 314 1 0 8 chain 19517 chr2 242193529 + 77187419 77187634 L1PA4 6152 + 5936 6151 56996 215 chain 498786 chr2 242193529 + 77219769 77225373 L1PA4 6152 + 549 6151 3168 687 0 1 2649 1 0 103 1 0 5 0 1 1301 1 0 292 2 0 309 1 2 252 chain 97465 chr2 242193529 + 77291790 77292857 L1PA3long 6157 + 5091 6157 18597 293 1 0 773 chain 3182 chr2 242193529 + 77345419 77345482 L1MD1 2063 + 1606 1652 98067 38 17 0 8 chain 29959 chr2 242193529 + 77350040 77350362 AluYb8 318 + 0 318 42094 118 4 0 200 chain 18548 chr2 242193529 + 77386686 77386945 L1PA8 5853 + 5592 5847 58049 16 2 0 71 1 0 13 1 0 51 1 0 13 5 4 9 0 1 39 1 0 4 1 3 31 chain 64301 chr2 242193529 + 77417166 77417913 L1PA4 6152 + 5415 6143 25350 422 21 0 157 0 2 147 chain 19003 chr2 242193529 + 77542706 77543005 L1P4 1494 + 1048 1350 57546 123 46 47 119 0 2 11 chain 49095 chr2 242193529 + 77544361 77545202 L1PREC2 3366 + 2232 3040 29907 51 1 0 45 7 6 6 0 1 172 0 1 143 0 8 87 2 0 54 1 0 44 7 3 14 56 42 14 2 0 28 36 20 14 31 29 26 chain 118049 chr2 242193529 + 77557420 77558961 THE1B-int 1605 + 13 1597 15878 329 10 9 81 0 25 305 26 37 341 5 3 171 1 0 5 0 1 75 0 10 86 1 0 97 0 1 8 chain 14731 chr2 242193529 + 77590943 77591124 LTR12C 1709 + 932 1112 62628 18 1 0 162 chain 2976 chr2 242193529 + 77591170 77591204 LTR12C 1709 + 838 872 100091 34 chain 534679 chr2 242193529 + 77592831 77598837 L1PA3long 6157 + 9 6152 1636 143 0 1 147 0 1 20 0 2 99 0 1 353 0 128 146 0 1 1156 0 2 117 1 0 936 2 1 683 0 1 1360 0 1 706 0 1 32 0 3 5 10 7 90 chain 136768 chr2 242193529 + 77646855 77648332 L1PA2 6032 + 4550 6027 13360 1477 chain 36900 chr2 242193529 + 77660185 77660646 LTR2 463 + 0 463 36812 129 0 3 248 2 3 28 1 0 28 1 0 24 chain 13698 chr2 242193529 + 77747457 77747675 MER61B 427 + 203 427 64017 87 37 43 94 chain 32045 chr2 242193529 + 77748956 77749391 L1PA6 6164 + 5721 6156 40315 150 0 1 91 19 18 21 0 7 8 7 0 139 chain 541964 chr2 242193529 + 77753772 77759778 L1PA2 6032 + 21 6032 1210 51 1 2 182 1 0 454 0 7 170 0 1 429 3 2 523 7 0 1162 0 1 1162 0 2 918 0 1 719 0 1 224 chain 68447 chr2 242193529 + 77794914 77795663 L1PA3long 6157 + 4233 4988 24347 566 0 6 183 chain 49515 chr2 242193529 + 77807602 77808185 LTR14C 587 + 0 587 29761 516 0 4 67 chain 11513 chr2 242193529 + 77808185 77808360 MER4E 760 + 593 760 67725 36 1 0 54 2 1 7 10 0 37 3 7 25 chain 163532 chr2 242193529 + 77810490 77812489 L1PA7 6471 + 4368 6464 11508 203 1 0 7 0 1 57 0 115 515 39 0 302 0 1 54 0 4 699 1 17 121 chain 23507 chr2 242193529 + 77815973 77816266 AluSg7 307 + 10 303 51581 113 1 0 8 0 1 171 chain 45215 chr2 242193529 + 77819468 77820027 MLT2A2 560 + 0 560 31472 97 0 1 462 chain 330298 chr2 242193529 + 77842648 77846388 L1PA5 6144 + 2340 6144 6209 316 4 5 676 0 2 1958 0 4 339 2 0 148 0 57 285 1 3 11 chain 111353 chr2 242193529 + 77932625 77934194 L1PA8 5853 + 4255 5853 16898 438 0 31 76 0 1 4 1 0 205 6 4 80 0 1 44 2 9 208 17 17 191 1 0 44 2 0 49 49 45 38 2 1 4 0 1 14 1 0 93 chain 27403 chr2 242193529 + 77965139 77965562 LTR7B 505 + 0 497 45700 95 11 21 59 0 38 12 21 16 8 0 29 2 0 2 40 0 1 42 1 0 23 4 5 48 2 1 55 chain 291936 chr2 242193529 + 77965570 77969144 HERVH-int 3825 + 0 3825 7077 49 10 12 204 7 5 213 2 1 4 1 0 12 37 31 39 1 0 10 1 0 24 29 0 15 0 37 42 2 1 57 0 1 6 0 2 13 0 3 549 7 6 349 4 31 299 0 10 1095 8 218 260 0 2 225 chain 29462 chr2 242193529 + 77970420 77970850 LTR7B 505 + 0 503 42654 106 1 11 67 6 68 26 0 2 42 0 1 42 1 0 23 4 5 32 2 1 15 2 1 61 chain 6206 chr2 242193529 + 78064378 78064688 L1MA4 2864 + 2499 2767 80334 16 1 0 28 22 23 48 177 135 18 chain 3060 chr2 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chain 4549 chr2 242193529 + 81436541 81436723 MER5B 177 + 13 176 88067 27 70 41 19 34 44 32 chain 6574 chr2 242193529 + 81440283 81440401 L1PB1 5432 + 5186 5300 79057 34 20 18 42 1 0 16 1 0 4 chain 20673 chr2 242193529 + 81476954 81477230 L1PA8 5853 + 5583 5853 55534 25 2 0 74 1 0 11 1 0 47 2 1 19 2 1 92 chain 29127 chr2 242193529 + 81487198 81487548 L1PA7 6471 + 4630 4985 43152 13 0 1 24 0 4 313 chain 118825 chr2 242193529 + 81487549 81488962 L1PA7 6471 + 4985 6469 15740 227 0 1 120 1 0 281 0 3 83 0 2 434 0 1 156 13 77 81 0 1 17 chain 9689 chr2 242193529 + 81562978 81563206 L1PB1 5432 + 5107 5316 71075 8 1 0 23 1 0 6 1 0 14 20 14 14 0 5 26 7 6 13 1 0 43 2 1 14 2 1 5 2 0 8 9 0 8 chain 38568 chr2 242193529 + 81609204 81609612 L1HS 6032 + 4095 4503 35664 408 chain 94246 chr2 242193529 + 81617970 81619064 L1PA5 6144 + 4779 5866 19006 93 0 3 419 1 0 388 12 3 181 chain 20207 chr2 242193529 + 81637211 81637472 THE1B-int 1605 + 0 262 56130 58 4 5 199 chain 192668 chr2 242193529 + 81637933 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13 5 90 0 2 25 322 8 204 12 0 6 1 0 13 12 14 132 1 0 4 0 1 7 3 0 375 1 0 4 11 12 37 chain 28218 chr2 242193529 + 81929183 81929482 AluYb8 318 + 19 318 44541 299 chain 64210 chr2 242193529 + 81953971 81954863 L1PA8A 6298 + 5413 6290 25370 76 2 1 10 6 5 58 4 7 197 2 0 132 1 0 36 20 5 229 11 12 65 2 3 41 chain 11166 chr2 242193529 + 81985692 81985832 LTR12C 1709 + 877 1017 68313 140 chain 29983 chr2 242193529 + 82005639 82006075 LTR7 482 + 6 475 42073 95 15 14 109 0 1 31 8 39 12 0 1 111 15 16 40 chain 49889 chr2 242193529 + 82022660 82023243 LTR14C 587 + 0 587 29606 317 3 1 199 0 6 64 chain 5273 chr2 242193529 + 82029809 82030043 HERVK14C-int 762 + 563 718 84327 5 2 0 44 142 67 8 1 0 10 1 0 21 chain 48240 chr2 242193529 + 82030697 82031279 LTR14C 587 + 0 587 30201 82 0 5 500 chain 121690 chr2 242193529 + 82046152 82047832 L1PA8 5853 + 4177 5853 15230 163 2 0 30 9 8 203 0 2 180 3 2 65 7 8 6 0 1 21 0 1 139 4 0 3 1 0 24 14 18 51 4 7 455 1 0 44 2 0 70 2 1 10 6 0 7 0 5 39 2 1 19 2 1 92 chain 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12567 chr2 242193529 + 82501251 82501405 THE1B 368 + 214 368 65862 154 chain 80680 chr2 242193529 + 82516664 82517570 L1PA4 6152 + 3360 4266 21494 906 chain 59704 chr2 242193529 + 82562428 82563081 L1PA3long 6157 + 5504 6157 26459 653 chain 82648 chr2 242193529 + 82569424 82570452 MER11B 1079 + 7 1063 21095 523 5 41 170 10 0 29 0 2 100 0 1 177 1 0 13 chain 15210 chr2 242193529 + 82622172 82622353 LTR12D 1347 + 404 674 62029 18 0 17 56 0 72 107 chain 45776 chr2 242193529 + 82647007 82647646 L1PA11 4918 + 3862 4488 31177 287 8 7 176 5 0 57 7 6 12 3 0 7 1 0 58 2 0 16 chain 110649 chr2 242193529 + 82675918 82677242 L1PA7 6471 + 5139 6461 16991 47 0 1 107 3 4 323 1 0 375 8 5 460 chain 8159 chr2 242193529 + 82693428 82693524 L1P2 5180 + 1924 2020 74505 96 chain 38377 chr2 242193529 + 82714746 82715180 L1PA5 6144 + 5707 6141 35794 434 chain 8178 chr2 242193529 + 82749860 82749969 L1PA10 4194 + 1162 1282 74471 24 4 15 81 chain 41195 chr2 242193529 + 82763649 82764203 MER41A 554 + 0 554 33844 85 10 0 200 0 1 195 26 35 38 chain 3935 chr2 242193529 + 82811657 82811700 U2 167 + 7 50 91859 43 chain 80497 chr2 242193529 + 82840240 82841106 L1HS 6032 + 5166 6032 21531 866 chain 21292 chr2 242193529 + 82870317 82870553 L1PA5 6144 + 5903 6139 54777 236 chain 50616 chr2 242193529 + 82883380 82884044 L1PA8 5853 + 5194 5853 29341 370 1 0 44 2 0 50 0 1 42 1 0 28 13 12 19 2 1 92 chain 5855 chr2 242193529 + 82911908 82911982 MER57B2 428 + 52 126 81673 74 chain 4376 chr2 242193529 + 82914569 82914616 Tigger2b_Pri 1066 + 842 889 89024 47 chain 3116 chr2 242193529 + 82992565 82992599 MER81 114 + 36 70 98647 34 chain 19743 chr2 242193529 + 83051867 83052347 LTR4 552 + 14 519 56737 12 2 0 37 0 1 4 23 19 16 118 154 18 1 0 4 14 17 97 21 13 113 chain 554057 chr2 242193529 + 83088804 83094831 L1PA2 6032 + 0 6030 478 76 0 1 179 1 0 270 4 0 184 1 8 169 0 1 2161 1 0 466 1 0 1888 0 1 626 chain 31345 chr2 242193529 + 83100349 83100765 L1PA8 5853 + 5443 5853 40852 121 1 0 43 3 1 71 1 0 8 0 6 6 6 0 41 2 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1519 0 4 168 0 3 504 1 2 171 chain 7096 chr2 242193529 + 83400568 83400681 L1MA4 2864 + 2541 2692 77274 51 4 45 38 3 0 17 chain 153698 chr2 242193529 + 83401724 83404012 L1PB1 5432 + 3188 5409 12127 298 6 5 200 4 9 24 34 13 459 1 2 230 1 0 6 0 1 189 5 2 20 0 1 56 0 2 70 50 47 34 8 0 77 2 0 57 4 0 71 1 2 5 1 0 33 1 4 9 3 0 21 1 0 12 1 0 9 2 0 3 2 0 9 7 5 47 2 1 15 1 0 43 74 55 12 2 0 24 1 0 21 1 0 13 1 0 5 chain 23539 chr2 242193529 + 83407254 83407630 MLT2A1 477 + 0 384 51524 54 0 4 59 1 0 4 0 1 4 7 9 5 0 1 21 7 11 22 27 25 104 1 0 60 chain 136510 chr2 242193529 + 83487921 83489444 L1PA4 6152 + 3818 5354 13390 122 0 1 187 1 0 386 0 17 466 2 0 13 2 0 344 chain 31467 chr2 242193529 + 83495206 83495568 L1PA5 6144 + 5770 6132 40761 362 chain 32027 chr2 242193529 + 83518015 83518425 LTR12E 1234 + 17 428 40329 96 0 2 158 20 19 136 chain 15461 chr2 242193529 + 83551663 83551984 MER61D 487 + 0 391 61709 44 24 46 51 5 65 26 8 7 35 40 32 26 2 0 7 1 0 52 chain 79304 chr2 242193529 + 83609566 83610594 L1PA7 6471 + 5430 6470 21780 194 20 25 206 0 1 233 2 1 69 0 1 146 14 19 132 0 1 12 chain 5929 chr2 242193529 + 83657746 83657816 U6 107 + 8 78 81362 70 chain 49787 chr2 242193529 + 83748835 83749508 LTR12C 1709 + 704 1709 29644 48 0 366 99 42 11 69 11 9 319 1 0 84 chain 134765 chr2 242193529 + 83766540 83768299 L1PA10 4194 + 1915 3693 13558 220 2 0 91 0 4 109 0 1 266 17 18 132 0 9 204 34 35 120 1 0 309 5 8 5 1 0 28 1 4 134 0 1 80 chain 559122 chr2 242193529 + 83768302 83774317 L1PA2 6032 + 0 6015 199 6015 chain 32646 chr2 242193529 + 83819223 83819663 MLT2A1 477 + 0 477 39808 142 0 1 26 5 9 22 1 4 120 1 0 59 17 43 4 0 1 5 0 3 38 chain 26131 chr2 242193529 + 83834163 83834585 LTR7B 505 + 0 495 47518 106 1 11 67 35 11 17 15 103 47 1 0 79 14 13 20 0 1 20 chain 51163 chr2 242193529 + 83839642 83840196 L1PA2 6032 + 5033 5587 29175 554 chain 27736 chr2 242193529 + 83851866 83852272 L1PA8 5853 + 5454 5853 45270 110 2 1 43 2 0 72 1 0 8 24 23 29 2 1 19 1 0 93 chain 8738 chr2 242193529 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120 1 0 51 chain 39299 chr2 242193529 + 84208659 84209199 MLT2A2 560 + 0 560 35150 160 30 32 214 0 11 67 6 9 55 0 4 8 chain 2864 chr2 242193529 + 84210654 84210690 MIR 256 + 88 126 101109 26 0 2 10 chain 552403 chr2 242193529 + 84224744 84230907 L1PA3long 6157 + 4 6157 585 2209 4 0 2079 12 0 352 0 5 199 0 1 168 3 1 679 0 2 458 chain 475845 chr2 242193529 + 84262379 84267873 L1PA5 6144 + 3 5513 3727 1405 1 6 54 0 1 4 1 0 100 12 12 66 0 1 141 0 4 894 0 1 230 0 1 268 5 6 421 2 0 423 0 1 298 0 4 1169 chain 11700 chr2 242193529 + 84268559 84268864 L1MA5A 2387 + 2102 2359 67395 5 1 0 35 0 1 14 2 0 27 1 0 14 61 32 13 0 1 52 1 0 10 50 34 19 chain 5219 chr2 242193529 + 84334622 84334701 L1PB1 5432 + 5347 5422 84589 23 1 0 22 1 0 12 1 0 14 1 0 4 chain 136833 chr2 242193529 + 84334722 84337029 L1MA2 4263 + 2055 4058 13355 179 10 5 90 2 1 111 8 12 103 0 4 84 5 3 259 5 8 62 0 1 131 0 7 129 3 1 5 0 2 11 0 1 58 6 7 4 1 0 20 10 11 202 1 0 7 0 1 5 5 7 76 1 0 16 9 12 12 308 0 62 41 37 4 0 1 150 2 1 9 1 0 73 8 0 19 chain 21212 chr2 242193529 + 84339227 84339467 L1PA4 6152 + 5902 6143 54868 155 0 1 85 chain 25325 chr2 242193529 + 84344352 84344701 THE1A 353 + 0 353 48749 14 1 7 59 6 5 22 7 6 240 chain 491527 chr2 242193529 + 84353645 84359916 L1PA7 6471 + 0 6413 3384 41 0 1 11 10 13 346 3 0 66 0 1 98 3 0 165 0 5 128 0 1 214 13 4 158 17 36 91 9 8 48 0 1 457 1 4 312 0 1 112 5 8 310 6 7 258 1 0 24 8 122 177 0 1 87 0 1 5 1 0 181 1 0 41 0 4 451 21 11 8 0 1 8 0 5 453 1 2 468 2 0 259 1 0 6 0 1 401 0 2 77 4 5 430 0 2 106 1 0 61 10 12 6 0 1 89 chain 79167 chr2 242193529 + 84366021 84367286 L1PREC2 3366 + 1743 3006 21816 82 0 11 6 1 2 170 6 7 211 0 4 21 0 1 188 0 1 133 0 4 39 1 0 4 17 20 66 4 0 39 2 0 34 25 45 15 15 7 14 29 21 17 6 1 11 7 5 11 1 0 18 4 1 11 26 12 31 chain 10952 chr2 242193529 + 84374387 84374706 MLT1B 390 + 0 289 68618 24 13 7 56 23 29 49 75 72 19 26 0 13 1 0 20 chain 4198 chr2 242193529 + 84388476 84388529 MLT1C 463 + 35 88 90140 53 chain 9588 chr2 242193529 + 84398290 84398412 L1PA7 6471 + 2020 2142 71282 122 chain 40896 chr2 242193529 + 84398412 84398903 L1PA7 6471 + 2143 2633 34031 165 1 0 325 chain 307942 chr2 242193529 + 84398907 84403006 L1PA7 6471 + 2638 6465 6661 255 0 1 703 9 8 26 0 3 83 0 1 203 1 2 288 0 2 351 324 29 856 0 1 57 0 3 87 0 1 16 0 2 87 0 1 81 8 10 515 4 6 117 0 8 17 4 0 7 chain 31977 chr2 242193529 + 84438688 84439163 LTR12F 595 + 4 595 40360 99 0 1 42 2 0 12 25 0 19 10 62 10 0 24 14 7 70 186 0 3 49 chain 20662 chr2 242193529 + 84455260 84455502 AluSp 311 + 48 290 55549 242 chain 54464 chr2 242193529 + 84460764 84461412 PABL_A 660 + 0 660 28065 41 0 1 42 0 9 416 0 2 149 chain 9432 chr2 242193529 + 84488283 84488391 L1PA2 6032 + 5926 6032 71628 101 2 0 5 chain 29777 chr2 242193529 + 84557364 84557684 AluYb8 318 + 0 316 42264 126 4 0 190 chain 61925 chr2 242193529 + 84561157 84561845 L1PA3long 6157 + 4765 5450 25882 324 1 0 83 2 0 278 chain 15794 chr2 242193529 + 84562873 84563235 THE1B 368 + 0 368 61291 11 9 10 32 19 20 40 0 1 55 1 0 11 44 50 11 1 0 65 49 48 14 chain 56599 chr2 242193529 + 84570239 84571057 LTR12 884 + 0 883 27388 25 1 0 51 91 0 243 0 25 24 11 9 159 0 1 101 0 133 112 chain 24434 chr2 242193529 + 84575609 84575892 AluY 311 + 7 291 50121 119 0 1 164 chain 6556 chr2 242193529 + 84646767 84646845 Tigger1 2417 + 1751 1829 79140 78 chain 523630 chr2 242193529 + 84662149 84668250 L1PA5 6144 + 0 6144 2105 134 8 34 485 1 0 158 0 17 341 9 0 60 2 0 673 1 0 411 2 1 130 0 2 730 1 0 497 1 0 813 0 4 373 0 2 117 1 0 312 2 0 164 4 15 174 0 1 255 1 0 241 chain 2741 chr2 242193529 + 84697831 84697875 Charlie4a 502 + 365 410 102041 26 4 5 14 chain 3018 chr2 242193529 + 84727340 84727552 MER6B 211 - 0 211 99665 13 7 11 38 107 98 26 8 12 13 chain 9340 chr2 242193529 + 84732337 84732504 L1MB8 1703 + 1327 1481 71835 13 15 0 37 1 5 41 14 12 46 chain 21919 chr2 242193529 + 84753505 84753779 AluSp 311 + 30 306 53945 246 4 6 24 chain 24208 chr2 242193529 + 84755794 84756125 THE1B 368 + 3 356 50486 41 5 20 108 2 0 21 2 0 41 3 15 44 1 0 63 chain 46625 chr2 242193529 + 84776712 84777246 L1PA5 6144 + 5602 6135 30807 289 1 0 244 chain 127704 chr2 242193529 + 84793921 84795314 L1PA3long 6157 + 4740 6144 14327 1240 0 11 153 chain 41282 chr2 242193529 + 84800810 84801259 L1PA2 6032 + 5583 6032 33797 449 chain 19411 chr2 242193529 + 84844164 84844489 THE1B 368 + 0 339 57119 150 68 83 9 2 1 96 chain 105412 chr2 242193529 + 84867369 84868680 L1PA5 6144 + 4917 6144 17627 429 0 1 390 1 0 278 112 28 101 chain 5612 chr2 242193529 + 84884490 84884583 MSTD 398 + 300 394 82746 20 11 12 62 chain 12658 chr2 242193529 + 84885297 84885488 MER90a 614 + 47 244 65706 121 24 30 46 chain 36071 chr2 242193529 + 84924701 84925276 MER51A 677 + 11 670 37365 129 3 0 37 0 44 13 16 40 70 21 20 126 37 58 67 1 0 55 chain 25524 chr2 242193529 + 84967576 84967874 AluSq10 312 + 8 306 48447 125 1 0 149 0 1 23 chain 22521 chr2 242193529 + 85058105 85058395 AluSg7 307 + 0 290 53091 69 1 4 58 0 1 142 9 5 11 chain 29468 chr2 242193529 + 85108247 85108556 AluYb8 318 + 1 310 42646 309 chain 9149 chr2 242193529 + 85128831 85128989 Tigger3a 397 + 203 374 72239 105 34 47 19 chain 4018 chr2 242193529 + 85299038 85299116 MADE1 96 - 0 96 91315 36 12 30 30 chain 8241 chr2 242193529 + 85367584 85367685 HY3 101 + 0 101 74305 101 chain 9495 chr2 242193529 + 85434506 85434617 HY1 111 + 0 111 71485 111 chain 194012 chr2 242193529 + 85483050 85485145 L1PA2 6032 + 3934 6032 9928 1873 0 1 47 0 2 175 chain 167425 chr2 242193529 + 85487024 85489060 SVA_D 2077 + 0 2076 11248 25 5 0 535 0 40 98 0 40 140 0 83 73 2 4 29 0 1 365 0 1 47 127 0 233 0 1 261 0 4 96 chain 6695 chr2 242193529 + 85488343 85488470 SVA_D 2077 + 1129 1256 40640 127 chain 5203 chr2 242193529 + 85497990 85498085 LTR54 533 + 9 101 84663 56 16 14 13 1 0 9 chain 8405 chr2 242193529 + 85509585 85509773 L1MB3 1562 + 1368 1524 73888 53 69 37 66 chain 4218 chr2 242193529 + 85564789 85564839 L1MC2 1988 + 1861 1911 90018 50 chain 23318 chr2 242193529 + 85689010 85689294 AluSp 311 + 3 287 51905 284 chain 8343 chr2 242193529 + 85715029 85715131 MLT1F1 559 + 0 102 74044 102 chain 21539 chr2 242193529 + 85837122 85837428 L1MA4 2864 + 2378 2685 54449 42 0 1 76 3 2 21 3 4 42 1 4 105 3 0 10 chain 25734 chr2 242193529 + 85880947 85881306 THE1A 353 + 0 353 48116 84 0 1 24 2 1 22 0 3 123 1 0 41 13 5 49 chain 121709 chr2 242193529 + 85881306 85883139 THE1A-int 1579 + 0 1579 15227 19 0 1 180 3 2 66 0 1 541 0 31 432 302 0 83 0 5 28 1 12 178 chain 26587 chr2 242193529 + 85883139 85883501 THE1A 353 + 0 353 46850 84 0 1 26 1 0 147 1 0 41 13 5 49 chain 551452 chr2 242193529 + 85963806 85969935 L1PA4 6152 + 14 6139 640 518 4 0 610 1 0 1177 0 1 4 0 1 967 1 0 2847 chain 6588 chr2 242193529 + 86013436 86013857 MLT1B 390 + 4 366 79018 11 3 0 11 2 1 31 5 15 13 290 224 11 0 1 44 chain 3257 chr2 242193529 + 86056128 86056163 L1MB7 1623 + 82 117 97396 35 chain 49459 chr2 242193529 + 86056487 86057280 Tigger1 2417 + 921 1739 29785 94 2 0 20 1 4 8 0 6 95 1 0 48 0 1 15 8 11 25 22 23 34 0 1 16 3 0 36 7 10 109 3 2 102 0 1 20 8 15 49 2 0 5 0 2 24 19 25 17 chain 23329 chr2 242193529 + 86197775 86198069 AluY 311 + 28 311 51881 93 12 0 11 0 1 55 0 1 92 1 0 30 chain 50092 chr2 242193529 + 86245199 86245755 LTR14 556 + 0 556 29526 556 chain 3566 chr2 242193529 + 86246072 86246132 MER3 215 + 144 210 94680 24 5 11 31 chain 75109 chr2 242193529 + 86261298 86262267 LTR5_Hs 974 + 0 974 22815 169 1 0 120 0 1 176 0 1 189 1 0 160 50 54 4 0 1 99 chain 12067 chr2 242193529 + 86265617 86265770 L1PB4 2604 + 2417 2569 66724 135 1 0 17 chain 13946 chr2 242193529 + 86310325 86310499 Tigger3a 397 + 158 336 63678 21 0 4 153 chain 31230 chr2 242193529 + 86520842 86521292 LTR7B 505 + 0 503 40945 103 0 20 52 0 38 12 34 27 26 0 2 42 0 1 39 1 0 26 0 1 52 2 1 61 chain 35760 chr2 242193529 + 86560273 86560717 L1PA7 6471 + 6016 6470 37562 83 0 8 213 0 2 82 0 2 53 2 0 11 chain 4044 chr2 242193529 + 86573945 86573998 MLT1C 463 + 63 117 91123 37 1 2 15 chain 525279 chr2 242193529 + 86663689 86669838 L1PA6 6164 + 0 6156 2036 64 0 1 395 15 14 372 0 1 158 0 1 446 2 1 391 0 2 479 13 0 407 0 9 448 0 1 536 5 0 209 0 1 16 0 1 104 0 1 379 1 5 870 0 4 699 0 1 140 chain 33436 chr2 242193529 + 86703756 86704170 LTR3B 427 + 0 423 39144 161 1 0 139 0 3 26 0 7 87 chain 6749 chr2 242193529 + 86779012 86779086 MER5A1 166 + 7 81 78483 74 chain 7618 chr2 242193529 + 86840047 86840260 MER51C 639 + 57 158 75829 31 56 0 41 56 0 29 chain 3060 chr2 242193529 + 86840178 86840212 MER51C 639 + 61 95 99220 34 chain 5629 chr2 242193529 + 86856833 86856907 MER33 330 + 113 187 82660 74 chain 46503 chr2 242193529 + 86879825 86880419 L1PB3 3668 + 1481 2087 30842 105 0 6 36 1 0 35 0 7 417 chain 22193 chr2 242193529 + 86897984 86898318 Tigger1 2417 + 1541 1831 53571 225 30 0 3 22 0 21 0 8 33 chain 3972 chr2 242193529 + 87060174 87060221 L1MB8 1703 + 520 567 91625 47 chain 28837 chr2 242193529 + 87099539 87099850 AluYa5 310 + 0 310 43575 132 1 0 178 chain 121378 chr2 242193529 + 87123266 87124578 L1PA2 6032 + 4718 6032 15282 230 0 2 1082 chain 22851 chr2 242193529 + 87136475 87136754 AluSc5 308 + 0 287 52580 16 1 9 262 chain 6468 chr2 242193529 + 87267394 87267586 MLT2B1 522 + 336 519 79457 18 33 14 50 23 24 15 24 33 29 chain 50111 chr2 242193529 + 87272755 87273320 L1PA4 6152 + 2796 3358 29518 119 3 0 443 chain 12487 chr2 242193529 + 87367972 87368136 L1MA5 2750 + 2435 2599 66007 129 1 0 4 0 1 30 chain 4821 chr2 242193529 + 87384734 87384855 L1PA16 3655 + 3365 3468 86595 36 49 31 36 chain 14045 chr2 242193529 + 87481710 87481897 MLT2D 439 + 0 196 63525 97 1 3 28 0 1 12 0 6 49 chain 124224 chr2 242193529 + 87699014 87700361 L1PA2 6032 + 4682 6032 14808 595 0 3 752 chain 3640 chr2 242193529 + 87712125 87712171 L1ME1 1623 + 1236 1282 94097 46 chain 22851 chr2 242193529 + 87712266 87712545 AluSc5 308 + 0 287 52579 16 1 9 262 chain 26052 chr2 242193529 + 87776002 87776365 MLT2A1 477 + 0 379 47656 65 1 0 77 6 7 20 0 4 160 21 33 13 chain 5492 chr2 242193529 + 87809316 87809378 AluSc 308 + 74 136 83269 62 chain 240050 chr2 242193529 + 87841589 87844222 L1PA3long 6157 + 3523 6157 8472 177 0 1 2456 chain 17493 chr2 242193529 + 87891977 87892194 MER41C 542 + 324 542 59250 189 0 1 28 chain 39204 chr2 242193529 + 87907013 87907427 L1HS 6032 + 5618 6032 35209 414 chain 37087 chr2 242193529 + 87913137 87913555 L1PA4 6152 + 5735 6152 36687 399 1 0 18 chain 28684 chr2 242193529 + 87926198 87926559 L1PA8A 6298 + 5884 6247 43827 137 13 14 198 0 1 13 chain 27402 chr2 242193529 + 87931545 87931918 THE1C 375 + 0 373 45701 125 3 0 58 1 2 5 1 0 22 1 4 157 chain 59785 chr2 242193529 + 87947369 87948082 LTR30 714 + 0 714 26434 448 15 16 250 chain 14431 chr2 242193529 + 87964619 87964803 PABL_A 660 + 0 196 62990 63 0 3 15 0 9 106 chain 22638 chr2 242193529 + 88021450 88021690 AluYa5 310 + 70 310 52930 240 chain 39621 chr2 242193529 + 88026384 88026906 MER41A 554 + 0 545 34944 76 5 4 135 1 0 109 5 30 191 chain 86938 chr2 242193529 + 88150743 88151721 L1PA4 6152 + 5157 6143 20241 849 0 7 51 0 1 78 chain 22639 chr2 242193529 + 88203524 88203901 THE1B 368 + 0 368 52929 15 7 5 84 1 0 4 1 2 9 12 7 46 3 1 92 22 23 5 1 0 75 chain 31606 chr2 242193529 + 88237286 88237741 MLT2A1 477 + 0 477 40658 169 1 5 136 20 4 64 22 56 43 chain 3044 chr2 242193529 + 88281085 88281122 MER3 215 - 8 45 99378 37 chain 14721 chr2 242193529 + 88302317 88302879 Tigger1 2417 + 2077 2361 62645 99 352 75 4 1 0 106 chain 143441 chr2 242193529 + 88340963 88342605 L1PA5 6144 + 4485 6144 12816 143 1 0 41 0 16 249 0 1 991 0 1 54 1 6 5 5 0 152 chain 13299 chr2 242193529 + 88348667 88348900 L1PA16 3655 + 3401 3619 64617 135 15 19 23 3 0 18 15 0 6 4 3 14 chain 17435 chr2 242193529 + 88362683 88363065 L1PB1 5432 + 5076 5422 59313 27 4 3 8 3 0 20 2 0 10 1 0 13 9 5 6 2 0 51 1 0 18 5 4 40 1 0 15 1 0 6 60 44 24 1 0 22 1 0 12 1 0 18 chain 4219 chr2 242193529 + 88374152 88374226 MADE1 96 + 6 96 90014 40 13 29 21 chain 25406 chr2 242193529 + 88418338 88418645 AluSq10 312 + 0 305 48616 125 2 0 180 chain 10271 chr2 242193529 + 88421000 88421168 MER44A 345 + 70 244 69862 30 0 2 8 22 18 6 0 1 41 0 7 61 chain 5409 chr2 242193529 + 88462768 88462848 MADE1 96 - 0 96 83664 38 4 20 38 chain 3956 chr2 242193529 + 88503737 88503866 LTR12C 1709 + 666 1037 91720 40 65 307 24 chain 30841 chr2 242193529 + 88533532 88534012 MLT2A1 477 + 9 477 41272 78 1 0 82 4 1 101 0 1 38 0 1 14 3 10 36 74 57 49 chain 15188 chr2 242193529 + 88602719 88602963 L1PA8 5853 + 5609 5853 62053 66 5 4 57 10 9 15 1 0 66 9 12 15 chain 3748 chr2 242193529 + 88653386 88653427 MamRep137 426 - 150 191 93266 41 chain 27448 chr2 242193529 + 88687667 88688030 THE1B 368 + 0 368 45645 12 2 1 27 0 5 93 0 4 30 2 1 19 2 0 176 chain 48910 chr2 242193529 + 88704702 88705295 L1PA10 4194 + 3565 4161 29976 43 0 4 318 0 2 13 0 4 55 3 0 112 3 0 34 1 0 11 chain 62048 chr2 242193529 + 88720659 88721374 L1PA7 6471 + 5754 6467 25862 705 2 0 8 chain 10664 chr2 242193529 + 88726276 88726479 MER30 238 + 0 238 69109 14 29 47 33 3 6 7 4 0 12 1 19 100 chain 282872 chr2 242193529 + 88729726 88732741 L1HS 6032 + 3017 6032 7345 3015 chain 121561 chr2 242193529 + 88758890 88760456 THE1B-int 1605 + 0 1605 15248 15 0 2 148 2 0 155 0 1 109 1 26 152 0 13 49 7 6 71 10 1 7 0 9 153 0 1 566 5 4 11 0 1 105 chain 83540 chr2 242193529 + 88778222 88779255 L1PA7 6471 + 4436 5477 20906 89 0 4 145 0 4 233 3 10 275 1 0 135 7 1 145 chain 192030 chr2 242193529 + 88793079 88795187 L1PA4 6152 + 4043 6152 10023 1257 0 1 851 chain 25013 chr2 242193529 + 88813367 88813703 THE1B 368 + 0 338 49256 13 2 0 24 1 6 129 12 11 155 chain 119173 chr2 242193529 + 88919947 88926868 SVA_B 1603 + 50 1603 15660 455 1 0 73 0 2 178 0 3 63 0 82 56 5451 0 14 1 0 621 2 0 6 chain 19288 chr2 242193529 + 88920785 88920995 SVA_B 1603 + 1051 1261 57250 210 chain 10308 chr2 242193529 + 88952353 88952484 LTR9B 643 + 0 131 69789 47 1 0 4 0 1 79 chain 35965 chr2 242193529 + 89050963 89051425 LTR2B 499 + 9 499 37433 5 1 0 52 2 0 5 1 0 34 0 31 92 0 1 270 chain 20889 chr2 242193529 + 89076045 89076395 THE1B 368 + 0 368 55270 44 7 22 103 1 0 31 2 0 19 1 0 23 40 46 18 0 1 61 chain 20973 chr2 242193529 + 89158831 89159177 L1PB2 3958 + 3502 3835 55168 42 2 1 72 1 0 66 1 0 18 9 3 18 2 1 30 2 0 18 11 10 54 chain 158687 chr2 242193529 + 89182948 89184720 L1PA4 6152 + 4368 6143 11831 511 0 3 1261 chain 66226 chr2 242193529 + 89185903 89186637 L1PA2 6032 + 5298 6032 24904 734 chain 54647 chr2 242193529 + 89197684 89198459 MER4E1 777 + 0 768 27993 25 13 12 81 4 2 194 6 15 96 1 0 78 56 42 171 0 2 50 chain 87911 chr2 242193529 + 89259304 89260504 L1PA10 4194 + 2868 4088 20065 256 1 5 6 12 0 6 1 0 117 1 2 19 8 20 94 1 11 132 2 1 239 0 2 21 0 4 251 0 1 33 chain 51479 chr2 242193529 + 89277079 89277676 L1PA5 6144 + 5546 6144 29056 514 0 1 83 chain 26986 chr2 242193529 + 89291820 89292199 MER50B 698 + 270 649 46290 194 30 29 47 1 2 107 chain 3539 chr2 242193529 + 89616092 89616133 MER6B 211 - 3 44 94947 41 chain 137602 chr2 242193529 + 89808215 89809774 L1PA3long 6157 + 4595 6157 13295 901 0 3 658 chain 6979 chr2 242193529 + 89858877 89858957 L1P1 4361 + 2603 2683 77673 80 chain 3808 chr2 242193529 + 89885383 89885425 LTR8 732 + 0 42 92781 42 chain 33317 chr2 242193529 + 89886137 89886680 LTR9B 643 + 5 559 39242 43 2 0 11 17 40 88 0 1 4 30 18 132 1 0 69 44 46 102 chain 24316 chr2 242193529 + 89979204 89979591 LTR7B 505 + 0 505 50308 105 0 10 56 18 86 54 1 42 54 0 1 5 1 0 5 0 1 14 22 21 20 0 1 5 2 0 25 chain 204687 chr2 242193529 + 90015478 90017994 L1PA7 6471 + 3278 6461 9548 219 2 0 25 2 1 80 0 1 232 1 0 36 7 8 5 0 2 222 1 0 259 0 1 639 7 8 128 0 665 327 0 1 324 chain 45695 chr2 242193529 + 90023095 90023770 L1PB2 3958 + 2827 3510 31210 97 1 0 280 2 1 41 7 28 35 2 0 13 7 10 29 1 0 13 5 0 65 2 0 9 2 0 3 2 0 59 chain 143173 chr2 242193529 + 90135791 90137538 L1PA6 6164 + 4409 6162 12844 103 7 6 195 8 1 190 0 1 216 0 1 193 1 0 88 0 1 283 0 10 39 0 1 94 0 1 330 chain 29656 chr2 242193529 + 90198050 90198458 L1PA8 5853 + 5452 5853 42424 112 1 0 44 2 0 74 1 0 6 20 19 33 2 1 19 2 1 92 chain 3034 chr2 242193529 + 90276739 90276772 L1PA16 3655 + 3435 3468 99469 33 chain 17424 chr2 242193529 + 90340481 90340760 THE1B 368 + 6 309 59324 38 0 15 110 1 0 29 42 52 59 chain 464846 chr2 242193529 + 91446947 91452452 L1PA4 6152 + 1 5522 3997 116 2 1 462 1 0 460 0 5 71 0 5 2627 0 1 957 0 7 809 chain 29609 chr2 242193529 + 91483342 91483671 L1PA5 6144 + 5796 6125 42470 329 chain 65148 chr2 242193529 + 91550960 91551710 L1PA5 6144 + 5399 6142 25150 737 7 0 6 chain 56715 chr2 242193529 + 91585186 91585865 L1PA5 6144 + 5458 6144 27353 15 0 4 333 0 1 319 1 3 11 chain 3539 chr2 242193529 + 91690351 91690392 MER6B 211 - 3 44 94946 41 chain 120309 chr2 242193529 + 91782774 91784172 L1PA4 6152 + 3930 5332 15479 1368 0 4 30 chain 3135 chr2 242193529 + 91823763 91823821 MLT2A1 477 + 384 476 98504 18 9 43 31 chain 96392 chr2 242193529 + 91851756 91852994 SVA_F 1814 + 615 1814 18725 43 0 80 162 47 0 47 0 15 15 48 0 232 49 0 309 0 4 276 0 6 10 chain 3885 chr2 242193529 + 91852070 91852118 SVA_F 1814 + 1026 1153 56832 1 1 79 36 0 1 10 chain 4409 chr2 242193529 + 91852350 91852399 SVA_F 1814 + 984 1033 58485 49 chain 482372 chr2 242193529 + 91901358 91907484 L1PA5 6144 + 0 6140 3582 108 38 51 50 3 2 39 1 3 58 86 103 67 7 6 28 10 11 6 0 2 24 0 1 21 0 3 371 24 0 211 13 4 732 1 0 181 0 1 455 0 1 167 1 2 5 1 0 406 0 4 156 0 1 42 0 1 354 3 0 118 0 3 135 0 1 1876 0 1 171 5 0 6 0 5 6 0 4 132 3 0 5 chain 212678 chr2 242193529 + 91907642 91910139 L1PA6 6164 + 3626 6153 9239 1023 1 0 530 0 4 29 1 0 22 4 6 24 0 20 34 0 5 21 0 1 441 1 2 105 1 0 260 chain 552789 chr2 242193529 + 91921173 91927204 L1PA2 6032 + 0 6032 561 4543 1 0 83 0 1 1390 0 1 14 chain 292073 chr2 242193529 + 91947274 91952959 L1P2 5180 + 2 3864 7071 148 1 0 34 5 2 8 1 0 53 18 17 141 1 0 92 13 12 6 1 0 104 0 1 34 1 0 5 14 65 59 0 15 139 0 6 497 0 1 105 1971 96 383 4 5 354 0 1 776 4 0 342 1 0 220 15 6 135 chain 81705 chr2 242193529 + 91968761 91969659 L1PA2 6032 + 2918 3816 21298 898 chain 131079 chr2 242193529 + 91969660 91971097 L1PA2 6032 + 3818 5254 13918 1241 1 0 195 chain 70353 chr2 242193529 + 91971099 91971877 L1PA2 6032 + 5254 6028 23900 767 4 0 7 chain 20762 chr2 242193529 + 92029055 92029376 MLT2A1 477 + 47 394 55417 95 0 1 26 1 5 106 0 25 40 19 27 13 12 0 9 chain 20138 chr2 242193529 + 92057862 92058173 THE1B 368 + 6 341 56206 38 0 15 110 1 0 29 35 45 98 chain 30829 chr2 242193529 + 92085925 92086257 L1PA2 6032 + 5541 5873 41285 332 chain 13336 chr2 242193529 + 92086260 92086408 L1PA2 6032 + 5881 6029 64571 148 chain 52885 chr2 242193529 + 92878627 92879195 L1HS 6032 + 5375 5943 28608 568 chain 53862 chr2 242193529 + 93694871 93695485 L1HS 6032 + 5418 6032 28265 466 1 0 120 1 2 26 chain 20441 chr2 242193529 + 94259622 94259925 MLT2A1 477 + 47 385 55840 95 0 1 26 1 5 64 3 0 42 0 25 40 19 27 13 chain 20196 chr2 242193529 + 94287771 94288082 THE1B 368 + 6 341 56144 38 0 15 110 1 0 29 40 50 93 chain 281520 chr2 242193529 + 94496017 94499162 L1PA2 6032 + 2832 6024 7386 755 0 1 28 0 1 797 0 31 739 0 4 62 0 1 117 0 3 365 11 17 271 chain 105033 chr2 242193529 + 94646529 94648002 L1P3 4156 + 2638 3956 17684 106 187 29 320 0 4 397 1 0 52 7 11 240 1 0 36 3 0 123 chain 7048 chr2 242193529 + 94748044 94748134 MER30B 195 + 93 189 77451 16 0 6 74 chain 2925 chr2 242193529 + 94805450 94805624 MER4E1 777 + 83 225 100630 21 64 60 25 51 23 13 chain 65838 chr2 242193529 + 94833161 94833928 L1PA5 6144 + 5367 6135 24993 299 1 2 467 chain 49041 chr2 242193529 + 94883190 94883752 L1PA5 6144 + 5580 6144 29937 25 0 3 292 2 1 243 chain 18573 chr2 242193529 + 94906303 94907516 L1PA15 4387 + 3895 4352 58022 38 15 24 107 758 0 6 1 2 32 1 0 26 1 0 55 1 0 4 105 107 20 27 20 16 chain 5604 chr2 242193529 + 94940247 94940341 MLT1B 390 + 295 388 82789 55 14 13 25 chain 518152 chr2 242193529 + 95092747 95098844 L1PA6 6164 + 0 6159 2359 143 0 12 250 1 0 95 11 10 711 1 0 240 0 2 393 0 4 366 0 3 212 0 3 177 0 21 536 1 0 85 1 10 34 0 14 379 3 0 961 10 1 298 0 1 460 2 11 409 1 0 18 0 4 139 0 5 5 4 0 5 2 0 137 2 0 5 chain 15955 chr2 242193529 + 95139944 95140128 L1PA6 6164 + 5818 6003 61083 70 0 1 114 chain 11302 chr2 242193529 + 95140152 95140284 L1PA6 6164 + 6024 6156 68078 132 chain 5324 chr2 242193529 + 95141101 95141176 L1PB1 5432 + 5350 5422 84075 20 1 0 22 1 0 12 1 0 18 chain 93275 chr2 242193529 + 95191339 95192369 LTR5A 1029 + 0 1029 19148 147 1 0 882 chain 88986 chr2 242193529 + 95192782 95193803 LTR13 1007 + 0 1007 19859 427 14 0 580 chain 6385 chr2 242193529 + 95194511 95194602 L1MA2 4263 + 4031 4114 79723 27 7 0 47 1 0 9 chain 14069 chr2 242193529 + 95230038 95230361 L1PB1 5432 + 5132 5422 63492 12 1 0 14 5 1 9 12 10 42 2 1 15 1 0 43 2 1 16 3 0 6 17 7 17 3 1 5 1 0 14 3 1 23 1 0 22 1 0 12 1 0 13 2 0 5 chain 32818 chr2 242193529 + 95236937 95239597 Tigger1 2417 + 29 2174 39653 12 20 2 47 1 14 80 2065 1554 27 10 3 15 12 16 48 3 0 153 0 5 10 11 13 146 chain 138306 chr2 242193529 + 95242813 95244355 SVA_D 2077 + 3 2076 13238 22 5 0 700 0 3 33 3 0 127 0 535 205 0 1 447 chain 15420 chr2 242193529 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172 1 0 153 79 92 27 chain 515126 chr2 242193529 + 95778476 95784605 L1PA6 6164 + 0 6153 2514 408 13 7 152 1 0 17 1 0 203 0 17 50 0 1 231 0 3 119 8 11 215 0 3 419 0 4 464 2 3 91 1 0 550 1 2 222 1 2 46 0 4 459 3 2 73 9 6 144 10 9 908 0 2 750 8 9 66 3 0 481 chain 72496 chr2 242193529 + 95804520 95805341 L1PA5 6144 + 3966 4787 23432 66 1 0 4 0 1 750 chain 38747 chr2 242193529 + 95815279 95815914 L1PREC2 3366 + 2245 2864 35532 15 6 0 9 10 0 90 0 3 48 22 41 28 5 0 4 0 1 48 12 4 127 20 21 57 5 0 11 2 0 9 0 1 44 2 1 43 1 0 4 3 0 10 chain 73148 chr2 242193529 + 95823540 95824353 L1PA2 6032 + 2728 3539 23287 32 12 10 769 chain 59486 chr2 242193529 + 95857528 95858270 MER4E 760 + 0 749 26513 23 0 1 142 1 0 11 1 2 184 1 3 15 0 4 364 chain 551593 chr2 242193529 + 95869529 95875690 L1PA3long 6157 + 6 6157 634 1243 1 0 1524 0 1 1305 10 0 2078 chain 23030 chr2 242193529 + 95876577 95876875 AluY 311 + 8 304 52311 115 1 0 9 0 1 97 11 10 8 1 0 56 chain 72406 chr2 242193529 + 95933802 95934755 L1PA7 6471 + 5500 6460 23449 118 1 0 37 0 11 45 1 0 247 9 8 6 0 1 128 0 2 7 2 0 21 1 0 177 14 13 139 chain 71542 chr2 242193529 + 95946251 95947040 L1PA3long 6157 + 5340 6157 23647 711 0 27 73 0 1 5 chain 109406 chr2 242193529 + 95975098 95976328 L1PA4 6152 + 4459 5690 17125 135 6 7 250 0 1 526 1 0 312 chain 2765 chr2 242193529 + 96080849 96080878 U2 167 + 0 29 101854 29 chain 48610 chr2 242193529 + 96159941 96161082 L1PA15 4387 + 3553 4366 30085 60 1 15 185 0 2 30 326 1 45 3 1 17 1 0 23 1 0 109 12 15 5 3 0 43 1 0 26 1 0 19 1 2 34 1 0 22 42 37 23 6 3 39 6 4 14 4 2 27 1 0 10 chain 9677 chr2 242193529 + 96167434 96167592 L1MB7 1623 + 1019 1179 71104 17 30 32 111 chain 24850 chr2 242193529 + 96272534 96272825 AluSp 311 + 6 297 49518 291 chain 2748 chr2 242193529 + 96294850 96294885 U2 167 + 0 34 101979 18 1 0 16 chain 7436 chr2 242193529 + 96312759 96312845 MER83 447 + 0 86 76286 86 chain 9052 chr2 242193529 + 96362242 96362347 Tigger1 2417 + 1584 1689 72445 105 chain 560108 chr2 242193529 + 96378981 96385128 L1PA3long 6157 + 6 6157 168 567 1 5 5579 chain 7295 chr2 242193529 + 96409805 96409892 LTR35A 463 + 341 426 76684 6 2 0 79 chain 3817 chr2 242193529 + 96410464 96410506 LTR72 515 + 26 68 92733 42 chain 46169 chr2 242193529 + 96412747 96413301 MER41A 554 + 0 554 30976 554 chain 5645 chr2 242193529 + 96430858 96430954 MER52A 1651 + 778 908 82584 12 1 0 49 16 51 18 chain 494425 chr2 242193529 + 96441103 96446600 L1PA3long 6157 + 0 6157 3298 67 9 7 20 0 526 161 0 128 909 0 1 1054 1 0 2294 0 1 142 0 4 828 0 3 12 chain 32258 chr2 242193529 + 96446625 96447009 L1PA5 6144 + 5761 6142 40139 370 3 0 11 chain 16467 chr2 242193529 + 96452625 96452962 THE1C 375 + 0 336 60419 44 4 0 43 8 9 48 0 19 16 92 75 82 chain 461430 chr2 242193529 + 96455124 96463238 L1PA8 5853 + 108 5853 4096 190 23 11 226 0 1 100 0 3 197 0 1 23 3 10 887 7 8 252 4 1 272 0 1 584 1 0 271 0 3 36 0 1 203 5 6 180 0 2 8 2 1 4 1 0 614 0 1 43 0 3 5 12 11 63 7 5 674 2 0 449 5 1 105 1 0 43 3 1 71 1 0 8 4 3 4 0 1 48 1 0 17 2362 0 93 chain 165329 chr2 242193529 + 96460829 96463122 SVA_F 1814 + 10 1814 11391 206 1 0 672 498 0 59 0 15 39 1 0 4 1 0 172 1 0 4 1 0 398 1 0 235 chain 20709 chr2 242193529 + 96461709 96462161 SVA_F 1814 + 888 1181 39843 48 0 1 10 3 17 68 174 0 149 chain 7597 chr2 242193529 + 96461838 96461922 SVA_F 1814 + 1208 1291 66291 66 1 0 17 chain 3965 chr2 242193529 + 96461935 96461981 SVA_F 1814 + 889 934 91663 10 1 0 35 chain 1564 chr2 242193529 + 96462165 96462206 SVA_F 1814 + 847 887 73920 9 1 0 31 chain 6189 chr2 242193529 + 96471325 96471423 L1MB3 1562 + 1060 1154 80390 25 14 10 59 chain 7499 chr2 242193529 + 96545975 96546085 Tigger1 2417 + 2046 2155 76133 54 8 9 13 2 0 33 chain 4640 chr2 242193529 + 96577899 96577959 MIR 256 + 59 120 87595 23 1 2 36 chain 39953 chr2 242193529 + 96585068 96585744 L1PB2 3958 + 3150 3835 34696 111 0 1 6 8 12 29 2 0 49 0 3 16 5 0 11 1 0 4 1 2 30 28 27 40 15 17 60 0 9 40 1 0 62 1 0 43 1 2 31 25 24 56 chain 4038 chr2 242193529 + 96922649 96922696 MER41B 635 + 511 558 91165 47 chain 14339 chr2 242193529 + 97014398 97014929 LTR12D 1347 + 587 1153 63136 26 0 4 57 78 0 20 0 17 41 177 202 46 61 128 25 chain 286657 chr2 242193529 + 97103527 97107417 L1PA5 6144 + 604 6139 7240 97 1 2 338 0 1 34 0 3 93 9 0 8 316 0 229 0 5 18 0 1 185 0 1 25 0 1 33 4 0 9 1 0 413 3 0 45 135 2105 1026 0 1 5 1 0 5 1 0 185 1 0 208 8 5 78 1 0 4 0 2 213 2 1 156 chain 37758 chr2 242193529 + 97130163 97130583 L1PA4 6152 + 5708 6128 36237 420 chain 130643 chr2 242193529 + 97170274 97171713 L1PA2 6032 + 4587 6031 13961 217 7 3 81 0 7 187 0 2 947 chain 136423 chr2 242193529 + 97176007 97178836 L1PA2 6032 + 3209 6027 13400 889 12 0 686 0 1 1242 chain 179729 chr2 242193529 + 97276990 97279537 L1PA10 4194 + 661 4161 10602 275 5 6 45 9 8 119 1 0 241 0 5 272 14 12 14 4 6 55 0 5 113 8 10 165 1 5 25 3 8 78 23 27 72 0 4 334 9 4 60 1 967 179 34 0 23 0 3 281 12 11 22 12 9 26 1 0 11 chain 120705 chr2 242193529 + 97295221 97296581 L1PA5 6144 + 4779 6139 15407 1360 chain 104292 chr2 242193529 + 97307845 97309349 L1PA11 4918 + 3108 4578 17785 143 0 1 440 20 0 31 7 8 239 14 18 343 6 11 46 25 22 38 2 1 25 3 0 15 1 0 9 14 10 11 32 22 13 2 1 12 2 0 11 chain 25540 chr2 242193529 + 97351548 97351899 MER51B 395 + 0 395 48425 34 13 32 34 0 6 139 1 0 53 0 20 77 chain 73492 chr2 242193529 + 97413270 97414087 L1PA5 6144 + 3966 4787 23221 378 0 4 439 chain 38638 chr2 242193529 + 97424409 97425055 L1PREC2 3366 + 2245 2864 35616 15 6 0 9 10 0 90 0 3 58 26 31 28 5 0 4 0 1 48 13 5 126 20 21 63 2 0 5 2 0 10 0 1 43 2 1 43 1 0 4 3 0 10 chain 6207 chr2 242193529 + 97430970 97431045 L1PA10 4194 + 589 664 80330 75 chain 59905 chr2 242193529 + 97513399 97514141 MER4E 760 + 0 749 26403 17 0 1 148 1 0 11 1 2 182 0 2 18 0 4 364 chain 550422 chr2 242193529 + 97525420 97531566 L1PA3long 6157 + 6 6157 715 708 1 2 42 0 1 1586 0 1 38 0 1 1231 0 1 2540 chain 95832 chr2 242193529 + 97573358 97574419 L1PA4 6152 + 4459 5521 18791 392 0 1 669 chain 6991 chr2 242193529 + 97684797 97684889 L1MB4 1306 + 718 811 77638 16 0 1 76 chain 26612 chr2 242193529 + 97710329 97710627 AluYk4 311 + 0 300 46817 96 0 2 202 chain 36870 chr2 242193529 + 97821094 97821611 LTR12 884 + 2 740 36832 23 1 0 30 0 41 22 0 25 38 0 25 25 0 4 82 25 0 11 0 49 217 0 103 43 chain 45603 chr2 242193529 + 97829173 97829791 LTR12 884 + 0 884 31259 24 1 0 264 1 3 30 0 25 30 2 0 26 5 6 6 2 0 47 0 4 44 0 3 85 0 236 51 chain 507404 chr2 242193529 + 97872470 97878856 L1PA7 6471 + 0 6467 2875 88 0 22 129 4 5 6 0 7 132 17 14 70 1 0 101 3 0 102 13 6 60 10 15 63 0 1 130 1 0 4 1 2 256 0 4 14 0 4 17 16 35 46 0 2 68 0 1 151 1 0 837 0 3 13 1 2 86 0 1 78 0 3 52 2 4 216 2 0 386 6 7 254 1 0 25 1 0 6 0 1 42 0 12 252 0 1 142 0 1 101 0 5 50 5 4 452 3 0 102 0 1 109 1 0 815 6 10 39 0 2 403 0 3 386 2 0 6 chain 379741 chr2 242193529 + 97937810 97942488 L1PA5 6144 + 1758 6144 5487 79 0 4 174 1 0 436 0 1 806 0 2 62 0 2 349 2 4 47 0 1 405 1 2 29 1 0 94 0 3 83 0 4 147 310 3 1487 2 1 149 3 1 11 chain 6601 chr2 242193529 + 97952322 97952478 L1MDa 1598 + 856 1033 78970 19 34 47 37 0 4 27 16 20 23 chain 49485 chr2 242193529 + 97964920 97965507 LTR14C 587 + 0 587 29773 587 chain 19375 chr2 242193529 + 98023245 98023579 MER1B 344 + 1 344 57155 77 31 35 148 0 1 4 42 46 32 chain 44325 chr2 242193529 + 98033769 98034430 MER4A 717 + 0 717 31936 43 0 1 79 4 0 137 0 13 97 0 40 46 18 1 18 10 35 81 0 9 5 9 0 37 10 9 60 1 0 6 chain 48533 chr2 242193529 + 98046155 98046709 MER41A 554 + 0 554 30107 554 chain 56881 chr2 242193529 + 98052583 98053416 MER41-int 2638 + 1857 2632 27305 19 2 0 12 0 4 17 2 0 30 0 7 103 11 13 164 3 5 184 73 0 206 0 4 7 chain 45172 chr2 242193529 + 98053430 98053992 MER41A 554 + 0 554 31482 63 0 1 373 9 0 117 chain 5033 chr2 242193529 + 98060201 98060259 MER50 708 + 627 685 85496 58 chain 236369 chr2 242193529 + 98074901 98077523 L1PA5 6144 + 3253 5873 8561 429 2 0 1096 0 1 511 2 0 128 0 1 454 chain 19953 chr2 242193529 + 98115214 98115451 L1PA6 6164 + 5925 6162 56456 237 chain 25985 chr2 242193529 + 98118454 98118745 LTR17 781 + 34 325 47735 291 chain 120671 chr2 242193529 + 98138821 98140247 LTR12C 1709 + 0 1709 15414 35 0 1 400 0 1 213 0 278 184 1 0 4 4 2 106 0 4 86 4 6 69 0 1 4 1 0 315 chain 44596 chr2 242193529 + 98220517 98221134 L1PA8 5853 + 5259 5853 31786 153 23 5 147 1 0 44 2 0 71 2 0 19 4 6 36 2 1 15 6 5 92 chain 92411 chr2 242193529 + 98267381 98268402 L1PA3long 6157 + 2835 3856 19286 1021 chain 32729 chr2 242193529 + 98317307 98317883 MER4B 649 + 1 641 39731 30 2 0 10 83 84 18 0 29 27 1 24 110 8 23 122 2 1 85 1 0 15 0 1 54 1 0 7 chain 27588 chr2 242193529 + 98351262 98351611 THE1B 368 + 0 368 45469 40 0 15 121 5 4 62 0 5 121 chain 3499 chr2 242193529 + 98353232 98353274 MLT2B2 565 + 516 558 95256 42 chain 21980 chr2 242193529 + 98386297 98386635 THE1B 368 + 9 368 53865 59 12 14 45 0 12 29 2 1 21 2 6 17 1 5 14 1 0 9 1 0 45 0 2 80 chain 4043 chr2 242193529 + 98400076 98400131 L1MD3 1191 + 85 156 91132 46 0 16 9 chain 30495 chr2 242193529 + 98421605 98422016 LTR7 482 + 0 482 41573 54 23 61 109 0 1 33 0 1 4 1 32 187 chain 98888 chr2 242193529 + 98433697 98435325 MER61-int 3695 + 1760 3434 18425 105 26 29 24 2 0 219 19 20 14 6 1 16 0 1 4 14 21 103 5 7 281 7 6 150 0 5 95 91 101 20 0 4 7 44 39 61 12 29 30 7 6 8 0 7 10 1 3 135 10 11 12 1 0 27 6 7 56 chain 48758 chr2 242193529 + 98435325 98436248 MER11C 1089 + 0 1052 30028 55 0 91 115 1 4 195 8 11 6 4 0 22 187 178 30 85 129 46 0 1 169 chain 32781 chr2 242193529 + 98497759 98498144 THE1B-int 1605 + 1222 1605 39687 4 1 0 341 1 0 38 chain 26206 chr2 242193529 + 98595408 98595691 L1PA2 6032 + 5743 6026 47407 283 chain 28881 chr2 242193529 + 98666915 98667270 THE1B 368 + 0 368 43512 44 0 15 113 1 0 121 1 0 75 chain 121260 chr2 242193529 + 98667270 98669168 THE1B-int 1605 + 0 1605 15304 73 1 0 39 1 4 312 343 37 111 16 21 275 5 12 139 1 0 582 chain 25464 chr2 242193529 + 98669168 98669527 THE1B 368 + 0 368 48533 44 6 21 109 1 0 6 0 1 4 1 0 7 4 0 95 2 1 5 1 0 35 1 2 38 chain 2743 chr2 242193529 + 98690713 98690747 L1MDa 1598 + 461 494 102011 24 1 0 9 chain 29551 chr2 242193529 + 98705661 98705976 AluYb8 318 + 0 316 42545 177 0 1 138 chain 24917 chr2 242193529 + 98732645 98732989 THE1B 368 + 6 357 49404 55 1 3 108 2 1 18 1 3 112 6 10 41 chain 6513 chr2 242193529 + 98765815 98765934 L1MB8 1703 + 1470 1588 79293 28 31 30 60 chain 11477 chr2 242193529 + 98782409 98782541 U4 144 + 0 132 67776 132 chain 9580 chr2 242193529 + 98877800 98877921 Tigger3c 601 + 174 293 71311 89 2 0 30 chain 5611 chr2 242193529 + 98904785 98904867 MSTB 430 + 0 80 82752 15 2 1 10 1 0 54 chain 9019 chr2 242193529 + 98940331 98940453 MER85 139 + 6 139 72519 90 5 16 27 chain 442979 chr2 242193529 + 98977854 98982944 L1PA4 6152 + 25 5077 4514 281 6 15 909 6 8 472 1 2 431 47 0 219 0 1 90 2 0 188 1 0 1209 2 1 1226 chain 22939 chr2 242193529 + 98990735 98991008 L1PA4 6152 + 1672 1939 52461 142 14 8 117 chain 45860 chr2 242193529 + 98991008 98991515 L1PA4 6152 + 1940 2453 31129 459 0 6 48 chain 124085 chr2 242193529 + 98991517 98992915 L1PA4 6152 + 2453 3850 14832 710 1 0 38 3 2 89 0 1 557 chain 23836 chr2 242193529 + 98992917 98993198 L1PA4 6152 + 3851 4131 51043 86 1 2 160 2 0 32 chain 289328 chr2 242193529 + 99000538 99004431 L1P1 4361 + 4 3615 7151 110 7 21 96 2 33 93 22 23 432 0 17 124 25 0 56 1 0 161 9 0 539 0 1 599 7 1 31 304 0 111 4 0 353 4 0 102 0 4 203 0 3 498 chain 252084 chr2 242193529 + 99004431 99007293 L1PA5 6144 + 3270 6135 8179 788 0 1 1228 1 0 524 7 10 314 chain 219839 chr2 242193529 + 99014384 99017483 L1PB1 5432 + 2210 5284 9047 68 2 0 412 0 2 5 2 0 215 1 0 380 34 25 53 1 2 123 13 19 213 23 10 117 0 6 101 0 1 32 8 14 296 0 1 18 0 1 231 16 17 38 0 1 16 3 0 3 7 0 139 1 0 42 2 3 33 10 6 250 15 13 22 1 0 6 1 0 14 5 1 9 3 1 51 2 1 39 0 1 23 chain 171763 chr2 242193529 + 99031657 99034184 Charlie3 2679 + 18 2270 11009 16 2 1 138 0 1 13 11 13 548 0 2 33 1 0 148 2 1 139 24 25 57 1 0 214 0 1 65 31 30 318 1 3 151 279 0 335 chain 178387 chr2 242193529 + 99037881 99040325 L1PBa 3878 + 1246 3732 10661 156 0 1 57 0 4 150 2 0 41 0 2 156 0 1 32 6 5 174 1 2 64 0 17 480 0 8 96 0 4 18 11 0 31 0 4 221 0 37 25 18 13 8 23 0 39 0 4 11 1 4 109 3 0 231 1 0 4 0 1 105 11 13 140 1 0 18 chain 112280 chr2 242193529 + 99043835 99045233 L1P2 5180 + 1797 3196 16779 185 0 1 4 1 2 218 0 4 116 10 1 182 2 3 139 0 3 541 chain 368553 chr2 242193529 + 99045235 99049739 L1PA7 6471 + 1956 6467 5687 177 5 6 380 0 2 76 13 21 20 2 3 45 0 1 442 4 5 876 12 11 414 0 4 516 1 0 161 9 1 366 0 1 138 6 4 72 0 2 759 2 0 8 chain 46529 chr2 242193529 + 99081957 99082532 LTR6A 649 + 68 649 30831 36 1 0 239 2 8 34 2 1 53 0 1 75 0 1 133 chain 14864 chr2 242193529 + 99088256 99088500 MER44A 345 + 112 344 62437 27 9 12 7 10 0 97 2 0 16 9 6 67 chain 377889 chr2 242193529 + 99089967 99095392 L1PB1 5432 + 11 5427 5518 11 6 0 187 0 1 30 2 0 66 4 3 149 19 9 50 0 1 5 9 8 13 0 1 83 11 15 123 4 3 62 6 7 388 0 4 59 1 0 7 0 1 42 0 1 47 10 0 7 33 14 123 0 3 146 0 1 98 30 63 110 16 4 516 0 5 9 0 1 4 6 0 7 15 20 55 5 9 214 50 66 67 0 4 47 1 0 27 0 1 326 2 1 146 1 5 655 0 1 69 1 0 243 10 13 153 4 1 167 1 0 16 13 12 22 0 1 87 6 9 75 7 9 84 1 2 9 3 0 9 12 11 12 1 0 4 13 9 9 2 0 52 2 1 15 1 0 44 1 0 16 2 0 6 17 6 19 2 0 5 1 0 14 6 4 20 1 0 7 12 14 13 1 0 18 2 0 5 chain 29016 chr2 242193529 + 99136516 99136827 AluYa5 310 + 1 310 43297 131 2 0 178 chain 9324 chr2 242193529 + 99176626 99176791 MER30 238 + 70 227 71866 29 43 35 93 chain 43076 chr2 242193529 + 99192862 99193371 L1PA8 5853 + 4730 5241 32728 257 0 4 19 2 0 231 chain 24714 chr2 242193529 + 99213581 99213934 THE1B 368 + 0 368 49706 44 24 39 82 8 7 6 0 1 189 chain 36191 chr2 242193529 + 99220683 99221217 L1PREC2 3366 + 1873 2406 37278 71 3 4 84 4 0 25 1 2 250 46 47 50 chain 21728 chr2 242193529 + 99223238 99223512 AluSp 311 + 38 311 54196 227 6 5 41 chain 59120 chr2 242193529 + 99227652 99228293 L1PA4 6152 + 4234 4875 26630 641 chain 31908 chr2 242193529 + 99228293 99228646 L1PA4 6152 + 4876 5229 40405 353 chain 200124 chr2 242193529 + 99233602 99236289 L1PA7 6471 + 4089 6460 9716 398 0 1 119 0 2 346 1 0 394 1 0 271 2 1 339 2 0 134 314 0 147 1 0 66 1 2 151 chain 93548 chr2 242193529 + 99247712 99248730 L1PA3long 6157 + 5127 6144 19104 763 2 1 253 chain 110794 chr2 242193529 + 99266311 99267818 MER4-int 2692 + 1204 2692 16970 112 0 1 99 3 4 47 14 19 18 9 4 34 4 8 60 1 2 34 0 3 28 0 1 104 1 0 234 0 7 99 0 2 120 6 0 86 5 13 59 43 3 287 chain 39058 chr2 242193529 + 99267826 99268296 MER4A1 472 + 0 472 35312 14 1 3 455 chain 57280 chr2 242193529 + 99276435 99277100 L1PA6 6164 + 5498 6161 27163 451 0 1 204 3 0 7 chain 10734 chr2 242193529 + 99279750 99279891 MER30 238 + 74 238 68978 25 1 23 85 0 1 30 chain 6813 chr2 242193529 + 99284963 99285061 LTR43B 570 + 0 100 78269 37 1 2 40 1 2 19 chain 5887 chr2 242193529 + 99304048 99304116 THE1B-int 1605 + 1525 1593 81535 68 chain 8843 chr2 242193529 + 99325114 99325244 L1MA3 4352 + 4191 4317 72873 67 2 0 25 7 5 29 chain 10021 chr2 242193529 + 99376106 99376271 MER30 238 + 65 238 70374 26 1 4 5 1 0 8 4 18 31 8 0 81 chain 6660 chr2 242193529 + 99457282 99457367 L1MD1 2063 + 881 964 78771 78 2 0 5 chain 7500 chr2 242193529 + 99460004 99460092 MER101 471 + 375 463 76130 88 chain 50751 chr2 242193529 + 99470361 99470953 LTR10C 591 + 0 589 29297 30 0 2 302 9 4 251 chain 2918 chr2 242193529 + 99477197 99477259 MLT1J 494 + 96 157 100687 15 20 19 27 chain 35921 chr2 242193529 + 99496718 99497180 LTR10F 562 + 0 562 37459 102 26 67 21 0 28 13 0 31 300 chain 181653 chr2 242193529 + 99500842 99503509 Harlequin-int 5206 + 135 2468 10518 14 5 1 82 9 11 29 22 21 183 0 1 18 1 0 10 0 1 95 9 14 67 1 0 16 6 7 56 0 1 341 1 0 5 7 8 337 318 0 491 2 0 190 0 1 16 20 0 189 0 1 127 chain 36392 chr2 242193529 + 99504035 99504501 LTR10F 562 + 0 554 37144 107 1 29 25 6 62 5 0 3 185 0 1 137 chain 3190 chr2 242193529 + 99521099 99521137 MER20 218 + 180 218 97976 38 chain 67938 chr2 242193529 + 99741129 99741871 L1PA3long 6157 + 4055 4797 24464 742 chain 110319 chr2 242193529 + 99773691 99775099 L1PA11 4918 + 3132 4517 17034 271 11 5 311 6 0 297 1 0 315 11 5 46 0 3 8 2 1 11 4 3 67 2 0 13 1 0 20 2 0 9 chain 86522 chr2 242193529 + 99829200 99830287 L1PA8 5853 + 4759 5853 20323 250 0 2 182 14 17 312 0 1 36 0 6 43 2 0 71 1 0 6 6 5 13 0 1 36 2 1 19 3 2 91 chain 5180 chr2 242193529 + 99834245 99834336 MIR 256 + 49 138 84769 46 20 18 25 chain 27125 chr2 242193529 + 99927822 99928194 THE1B 368 + 0 368 46091 13 7 1 26 0 5 127 2 1 120 1 0 47 1 0 28 chain 14976 chr2 242193529 + 99932099 99932322 MER30 238 + 0 238 62293 15 13 14 79 4 21 70 3 0 39 chain 43577 chr2 242193529 + 99940301 99940854 MER41A 554 + 0 554 32396 92 0 1 91 10 11 147 0 1 118 13 12 77 1 0 4 chain 52993 chr2 242193529 + 99954344 99954925 L1PA3long 6157 + 5576 6157 28579 581 chain 26600 chr2 242193529 + 99982148 99982518 THE1B 368 + 0 368 46833 36 1 6 130 2 1 65 5 0 67 3 2 61 chain 132852 chr2 242193529 + 100025227 100027067 L1PB1 5432 + 3644 5420 13750 318 0 1 636 4 6 12 7 4 416 22 22 44 45 11 24 1 0 9 37 30 42 3 2 11 6 5 44 1 0 15 3 0 15 9 0 16 10 7 12 2 0 7 6 7 10 1 0 21 1 0 13 1 0 16 chain 17212 chr2 242193529 + 100072121 100072446 MER1B 344 + 0 338 59563 18 11 19 43 14 22 96 22 18 50 28 29 43 chain 45347 chr2 242193529 + 100127794 100128348 MER41A 554 + 0 554 31396 53 0 1 458 2 1 41 chain 30122 chr2 242193529 + 100165104 100165421 AluYb8 318 + 1 318 41922 317 chain 24209 chr2 242193529 + 100231145 100231514 THE1B 368 + 7 368 50483 10 2 0 30 0 1 60 14 15 54 23 16 101 1 0 74 chain 77120 chr2 242193529 + 100269772 100270806 LTR5B 1012 + 0 1012 22281 128 1 14 103 47 1 28 10 11 132 1 0 72 1 0 442 0 3 11 0 7 51 0 2 7 chain 43129 chr2 242193529 + 100333636 100334151 MER9a1 513 + 0 513 32695 156 12 10 347 chain 106645 chr2 242193529 + 100342837 100345177 THE1B-int 1605 + 0 1605 17478 170 0 1 227 5 6 26 37 20 179 80 83 43 0 9 312 4 5 13 838 105 406 chain 19959 chr2 242193529 + 100356249 100356603 THE1B 368 + 7 368 56452 104 0 3 9 1 0 54 63 69 60 17 16 46 chain 18510 chr2 242193529 + 100376093 100376305 L1PA5 6144 + 5930 6143 58089 66 0 1 146 chain 7605 chr2 242193529 + 100432109 100432217 L1MB8 1703 + 1209 1318 75853 81 5 6 22 chain 212317 chr2 242193529 + 100456964 100460120 MER4-int 2692 + 1 2692 9262 10 1 0 25 2 0 63 2 0 8 4 3 7 6 0 115 0 4 326 3 4 58 0 4 16 487 0 19 0 1 62 1 0 5 1 6 45 0 15 42 0 1 79 0 1 277 0 3 558 1 0 263 4 2 99 0 2 150 0 2 10 1 0 406 chain 35943 chr2 242193529 + 100460128 100460596 MER4A1 472 + 0 472 37444 7 0 1 279 13 16 169 chain 5850 chr2 242193529 + 100504805 100504957 L1MC1 2226 + 2066 2198 81694 17 5 0 22 2 0 6 36 25 16 1 0 32 1 0 14 chain 15247 chr2 242193529 + 100536838 100537036 AluSg7 307 + 1 205 61984 41 0 6 80 1 2 59 2 1 15 chain 14637 chr2 242193529 + 100548520 100548721 MER107 203 + 8 203 62753 111 14 0 26 5 0 7 0 13 38 chain 3539 chr2 242193529 + 100553790 100553850 L1MB7 1623 + 1364 1423 94944 11 10 9 39 chain 25908 chr2 242193529 + 100585169 100585587 MSTA 426 + 0 406 47849 23 15 13 93 1 0 19 4 0 54 8 4 21 20 19 50 0 5 44 5 0 61 chain 19869 chr2 242193529 + 100666912 100667199 Tigger3b 1229 + 651 941 56583 46 2 1 56 6 10 5 3 0 5 0 3 164 chain 80194 chr2 242193529 + 100684865 100685837 LTR5_Hs 974 + 0 974 21589 467 0 1 188 0 1 317 chain 7077 chr2 242193529 + 100689017 100689188 L1PB1 5432 + 5280 5427 77343 16 29 16 15 1 0 4 2 0 15 2 0 27 1 0 18 1 0 13 3 2 12 2 0 5 1 0 4 chain 27332 chr2 242193529 + 100712062 100712553 MLT2A1 477 + 0 475 45784 48 0 2 69 0 1 19 1 2 24 35 39 142 0 2 33 81 56 21 1 0 17 chain 373082 chr2 242193529 + 100712555 100717231 HERVL-int 5654 + 0 5654 5604 15 1 0 210 0 8 354 1 0 4 2 3 17 0 17 230 0 1039 8 4 6 232 0 6 61 0 2 43 1 0 65 0 1 14 1 2 165 0 3 166 0 1 290 0 1 225 138 4 363 0 1 151 0 1 40 0 2 796 0 4 238 1 0 4 5 30 403 7 6 199 0 1 79 0 1 143 chain 11740 chr2 242193529 + 100714664 100714801 HERVL-int 5654 + 2396 2536 66841 108 0 3 29 chain 38225 chr2 242193529 + 100725908 100726450 L1PA8 5853 + 5318 5853 35893 19 1 0 185 0 1 41 1 0 46 2 0 71 1 0 12 17 16 31 2 1 19 2 1 92 chain 3175 chr2 242193529 + 100871145 100871179 MER58A 224 + 49 83 98146 34 chain 17760 chr2 242193529 + 100952334 100952582 AluSp 311 + 52 300 58938 170 30 30 48 chain 9098 chr2 242193529 + 100992395 100992556 MSTA 426 + 14 206 72347 75 0 1 8 31 61 47 chain 130945 chr2 242193529 + 101015621 101017073 L1PA3long 6157 + 4694 6144 13935 1314 1 0 132 1 0 4 chain 9359 chr2 242193529 + 101057066 101057498 MER34A1 583 + 11 440 71789 56 41 42 5 3 0 19 115 100 21 116 130 56 chain 18378 chr2 242193529 + 101075445 101075782 THE1D 372 + 16 353 58265 35 10 1 22 4 5 49 1 5 12 48 55 25 1 0 14 2 0 114 chain 291821 chr2 242193529 + 101098390 101102005 L1PA8A 6298 + 2694 6290 7079 15 7 10 39 6 10 339 0 3 256 8 0 46 0 8 27 0 3 919 0 1 78 0 3 5 3 0 39 1 0 258 1 0 4 0 1 142 37 11 266 7 0 314 9 8 536 0 2 253 chain 24617 chr2 242193529 + 101129636 101129932 AluY 311 + 13 310 49842 116 1 2 179 chain 25852 chr2 242193529 + 101169422 101169757 THE1B 368 + 33 368 47936 4 0 1 65 1 0 66 1 0 22 0 2 100 1 0 75 chain 123779 chr2 242193529 + 101169757 101171333 THE1B-int 1605 + 0 1605 14884 287 0 1 142 1 26 254 10 11 299 3 1 38 0 3 341 0 1 129 1 0 4 0 1 67 chain 28295 chr2 242193529 + 101187712 101188084 THE1C 375 + 0 375 44424 47 1 2 31 5 6 27 1 2 260 chain 26053 chr2 242193529 + 101212317 101212962 THE1C 375 + 2 336 47654 117 0 1 41 312 0 175 chain 3286 chr2 242193529 + 101220275 101220404 MER58A 224 + 53 184 97146 30 47 47 14 22 24 16 chain 19902 chr2 242193529 + 101225658 101225917 MER57A1 433 + 0 268 56533 40 0 8 193 2 3 24 chain 72416 chr2 242193529 + 101237836 101238705 MER11D 897 + 5 897 23446 259 9 9 318 3 26 280 chain 40375 chr2 242193529 + 101243764 101244225 HERVK11D-int 613 + 153 613 34401 135 1 0 325 chain 75585 chr2 242193529 + 101244225 101245098 MER11D 897 + 0 897 22697 591 3 26 165 0 1 114 chain 27949 chr2 242193529 + 101255213 101255507 AluYk11 308 + 0 294 44948 294 chain 5802 chr2 242193529 + 101257487 101257556 LTR19A 502 + 433 502 81914 69 chain 23233 chr2 242193529 + 101289435 101289725 AluSc5 308 + 11 297 52032 246 9 5 35 chain 475934 chr2 242193529 + 101315924 101321457 L1PA6 6164 + 550 6160 3724 389 0 25 198 0 3 789 1 0 363 8 9 863 0 1 80 0 1 23 0 1 371 0 1 24 3 0 12 0 1 661 0 4 776 0 8 162 1 0 178 2 0 595 0 36 27 0 2 7 chain 15394 chr2 242193529 + 101325945 101326446 L1MC1 2226 + 1722 2198 61792 66 4 0 51 142 145 8 2 0 55 107 87 18 1 0 32 1 0 14 chain 3502 chr2 242193529 + 101339663 101339729 MLT1F1 559 + 487 551 95237 24 8 7 4 1 0 29 chain 63334 chr2 242193529 + 101353324 101354124 L1PA8 5853 + 5052 5853 25556 89 0 1 81 0 1 340 1 0 24 9 8 12 2 0 71 2 0 57 10 8 18 0 7 84 chain 54688 chr2 242193529 + 101424234 101424860 L1PA6 6164 + 5371 5999 27978 186 0 1 273 0 1 167 chain 12856 chr2 242193529 + 101424877 101425023 L1PA6 6164 + 6016 6160 65337 138 2 0 6 chain 6808 chr2 242193529 + 101491186 101491371 MLT1A1-int 1737 + 56 246 78287 27 0 1 26 1 0 30 82 87 19 chain 26285 chr2 242193529 + 101505136 101505419 L1HS 6032 + 5573 5856 47297 283 chain 6596 chr2 242193529 + 101508878 101508963 Charlie1b 519 + 190 275 78983 85 chain 8921 chr2 242193529 + 101603005 101603133 MER85 139 + 0 139 72736 94 13 24 21 chain 22258 chr2 242193529 + 101669823 101670110 AluY 311 + 9 298 53466 38 5 6 73 1 2 170 chain 183897 chr2 242193529 + 101748668 101750658 L1PA2 6032 + 4026 6017 10391 1236 0 1 754 chain 19651 chr2 242193529 + 101908235 101908468 MER51C 639 + 406 639 56854 233 chain 339884 chr2 242193529 + 101935385 101939488 L1P3 4156 + 0 4139 6072 62 1 15 174 1 0 459 4 13 59 2 1 424 0 4 622 1 0 262 6 8 225 1 0 85 0 1 147 0 6 62 0 1 134 1 5 94 1 0 481 0 1 646 0 2 114 2 0 9 1 0 23 chain 3670 chr2 242193529 + 101956910 101956978 L1MC4 1079 + 690 759 93819 18 13 14 37 chain 45792 chr2 242193529 + 102047857 102048455 L1PA8 5853 + 5209 5834 31169 348 12 11 40 2 0 72 1 0 9 5 0 11 0 1 39 2 1 47 0 36 10 chain 540950 chr2 242193529 + 102324371 102330492 L1PA4 6152 + 6 6143 1284 738 1 0 1576 1 0 1924 0 13 99 0 4 38 0 1 852 0 1 565 1 0 326 chain 30136 chr2 242193529 + 102373253 102373621 L1PA7 6471 + 6103 6469 41901 204 5 3 159 chain 21875 chr2 242193529 + 102373837 102374182 MER1A 529 + 198 529 54009 139 0 1 113 72 57 21 chain 41358 chr2 242193529 + 102534182 102534640 L1PA3long 6157 + 5026 5484 33755 458 chain 68067 chr2 242193529 + 102626070 102626834 L1PA5 6144 + 4631 5395 24440 764 chain 21841 chr2 242193529 + 102641794 102642042 L1PA6 6164 + 5901 6149 54049 248 chain 460102 chr2 242193529 + 102644736 102650490 L1PA8 5853 + 119 5853 4122 186 0 4 13 4 5 1193 0 2 40 1 0 457 7 0 139 16 4 91 1 6 5 0 2 83 4 8 27 2 1 197 4 0 3 34 0 19 0 4 76 0 1 203 1 0 45 1 5 59 1 2 745 14 13 212 1 7 80 0 4 99 0 1 210 0 10 502 0 3 124 2 0 75 0 2 51 0 3 265 4 0 54 0 2 101 1 0 46 2 0 57 4 0 6 9 8 10 2 0 47 6 5 19 1 0 93 chain 30591 chr2 242193529 + 102739384 102739814 MSTA 426 + 0 426 41472 26 6 7 70 0 1 55 8 0 46 5 4 36 1 0 12 0 1 54 2 5 109 chain 52961 chr2 242193529 + 102775147 102775736 L1P1 4361 + 3741 4328 28589 409 1 0 155 1 0 23 chain 14538 chr2 242193529 + 102880612 102880825 MER30 238 + 0 238 62859 99 11 0 9 0 30 14 0 6 22 2 1 4 0 1 52 chain 12785 chr2 242193529 + 102890497 102890635 L1PA3long 6157 + 6019 6157 65463 138 chain 219151 chr2 242193529 + 102897703 102900159 L1PA4 6152 + 3679 6140 9062 260 4 5 139 0 2 1732 1 2 219 0 1 101 chain 16423 chr2 242193529 + 102999216 102999453 MER1B 344 + 96 344 60486 170 11 19 26 4 7 26 chain 192669 chr2 242193529 + 103041259 103043997 L1PB1 5432 + 2753 5424 9987 73 1 0 11 6 5 349 2 0 73 1 0 4 0 1 467 21 1 13 0 1 205 1 0 428 0 1 5 6 8 222 1 0 1 0 2 189 6 5 220 23 15 54 1 0 7 2 0 4 3 0 21 1 0 9 16 11 11 3 1 50 2 1 16 1 0 42 8 7 9 1 0 5 20 9 18 8 5 12 7 5 21 1 0 21 1 0 13 2 1 15 1 0 4 chain 60338 chr2 242193529 + 103044897 103045670 THE1B-int 1605 + 14 890 26279 237 0 33 40 1 8 63 0 64 222 1 0 209 chain 215713 chr2 242193529 + 103059757 103062403 L1PA7 6471 + 3863 6467 9154 137 8 0 257 1 2 79 5 6 347 0 1 257 2 0 35 0 1 41 41 5 1436 chain 118640 chr2 242193529 + 103071316 103072628 L1PA3long 6157 + 4844 6157 15786 415 0 1 897 chain 6225 chr2 242193529 + 103095573 103095762 L1MC1 2226 + 1789 1972 80259 22 88 83 21 1 0 57 chain 22362 chr2 242193529 + 103118786 103119099 AluSc 308 + 0 305 53330 20 14 9 244 9 6 26 chain 27253 chr2 242193529 + 103151747 103152096 THE1B 368 + 6 368 45892 34 0 15 117 1 0 122 1 0 74 chain 488267 chr2 242193529 + 103200565 103206279 L1PA4 6152 + 10 5735 3462 111 7 7 347 0 4 287 6 2 35 0 4 884 1 2 268 0 1 6 1 0 881 0 1 135 1 2 529 1 0 6 0 1 370 0 1 848 0 3 990 chain 98857 chr2 242193529 + 103238050 103239528 L1PA8 5853 + 3684 5796 18429 155 41 685 460 1 0 25 2 0 83 1 0 267 13 0 7 26 41 154 12 11 35 6 4 64 19 16 49 17 16 4 1 0 36 chain 30149 chr2 242193529 + 103257207 103257560 L1PA7 6471 + 6068 6420 41889 76 0 1 119 2 0 156 chain 15728 chr2 242193529 + 103302143 103302333 L1PA7 6471 + 4336 4525 61373 37 1 0 152 chain 14311 chr2 242193529 + 103394598 103394776 AluSp 311 + 58 235 63177 74 1 0 103 chain 223688 chr2 242193529 + 103414853 103418564 L1PB1 5432 + 2335 5409 8940 71 0 1 84 1 2 43 0 1 293 13 13 159 1 2 207 12 11 250 331 2 4 0 1 5 0 3 48 0 3 194 1 0 513 308 0 100 7 0 77 0 19 11 0 13 161 3 0 310 0 1 122 4 5 32 8 11 7 5 0 24 1 0 9 16 11 9 2 0 53 19 17 44 1 0 7 1 0 4 6 4 17 10 1 13 11 8 11 2 0 24 1 0 18 5 4 12 1 0 5 chain 5207 chr2 242193529 + 103576043 103576127 L1PB1 5432 + 5335 5415 84643 11 2 0 24 1 0 14 0 1 6 1 0 13 1 0 11 chain 76359 chr2 242193529 + 103591422 103592544 MER11A 1151 + 0 1144 22476 55 0 99 140 4 0 94 0 1 51 5 6 83 0 3 8 0 7 137 5 6 145 6 5 22 88 0 74 8 6 5 0 2 22 0 1 85 0 2 17 0 1 4 1 0 63 chain 55663 chr2 242193529 + 103633039 103633708 L1PA7 6471 + 5798 6466 27675 510 4 5 146 2 0 7 chain 154445 chr2 242193529 + 103687213 103688935 L1PA4 6152 + 3998 5739 12089 141 0 1 1259 0 3 167 0 15 155 chain 3390 chr2 242193529 + 103889911 103889952 MSTC 436 + 395 436 96174 41 chain 73692 chr2 242193529 + 103949462 103950263 L1PA3long 6157 + 5356 6157 23172 801 chain 17495 chr2 242193529 + 103996214 103996426 L1PA7 6471 + 6248 6461 59246 20 0 1 192 chain 43699 chr2 242193529 + 104108081 104108571 L1PA4 6152 + 5653 6143 32323 490 chain 9855 chr2 242193529 + 104110485 104110658 Tigger1 2417 + 2209 2404 70710 24 2 0 24 1 0 65 26 51 31 chain 77094 chr2 242193529 + 104134506 104135416 L1PA4 6152 + 5230 6145 22292 28 12 18 25 1 0 844 chain 25035 chr2 242193529 + 104163091 104163396 AluY 311 + 6 308 49222 125 3 0 177 chain 34952 chr2 242193529 + 104171565 104172069 MLT2A2 560 + 0 560 38053 166 0 9 19 8 11 74 25 57 55 1 2 14 16 27 126 chain 34265 chr2 242193529 + 104214496 104215024 HUERS-P3b-int 2065 + 1515 2031 38517 84 1 3 12 1 0 25 1 0 86 10 8 69 2 0 18 4 1 63 5 1 47 9 8 91 chain 109942 chr2 242193529 + 104257244 104258982 L1MA1 4479 + 1819 4172 17084 40 1 0 77 9 670 62 1 0 72 1 0 14 20 17 33 1 0 68 8 7 79 1 0 27 2 0 156 3 2 15 2 0 17 4 0 76 10 12 127 5 1 129 1 0 36 5 10 15 13 4 74 4 6 13 3 1 35 1 0 25 8 6 10 1 0 66 10 9 16 2 0 13 1 0 88 1 0 4 3 1 4 1 0 113 10 9 29 2 0 37 1 0 7 1 0 5 4 0 16 chain 35504 chr2 242193529 + 104337416 104337829 L1PA4 6152 + 5739 6151 37721 252 1 2 153 2 0 5 chain 26701 chr2 242193529 + 104355701 104356059 HSMAR1 1287 + 6 367 46682 101 16 19 241 chain 138769 chr2 242193529 + 104397204 104398720 L1PA3long 6157 + 4626 6142 13207 681 1 0 305 0 1 529 chain 19387 chr2 242193529 + 104528955 104529190 L1PA10 4194 + 3916 4150 57144 107 0 2 91 3 0 34 chain 57391 chr2 242193529 + 104564508 104565315 L1MA2 4263 + 3236 4047 27134 229 3 0 101 1 0 18 8 4 29 0 18 25 3 2 83 2 1 63 3 0 6 0 1 140 11 9 82 chain 5581 chr2 242193529 + 104568822 104568902 MADE1 96 + 0 96 82892 23 6 22 51 chain 210195 chr2 242193529 + 104607344 104609931 L1P2 5180 + 2 2620 9347 148 1 0 43 0 1 5 3 1 47 3 2 31 7 4 58 5 7 112 1 0 54 6 5 159 1 2 79 0 1 26 0 15 147 0 1 343 0 1 135 0 3 76 0 1 284 16 18 141 1 0 30 0 12 184 0 1 441 chain 3029 chr2 242193529 + 104687121 104687153 MER45C 884 + 130 162 99518 32 chain 20289 chr2 242193529 + 104719875 104720129 THE1B-int 1605 + 0 254 56027 254 chain 25186 chr2 242193529 + 104720361 104720659 L1PA5 6144 + 5844 6142 48974 148 1 2 137 1 0 11 chain 3924 chr2 242193529 + 104785024 104785102 MER5A1 166 + 75 154 91963 45 18 19 15 chain 10479 chr2 242193529 + 104886096 104886220 MER41B 635 + 511 635 69452 124 chain 89034 chr2 242193529 + 104926032 104927101 L1PA7 6471 + 5388 6457 19851 233 1 0 334 0 9 311 9 1 181 chain 34961 chr2 242193529 + 104987715 104988172 L1PA8 5853 + 5369 5853 38048 165 0 7 23 1 0 44 2 0 55 1 0 4 0 26 47 2 1 19 2 1 92 chain 81023 chr2 242193529 + 105028038 105029318 L1PA16 3655 + 2298 3590 21433 283 0 1 92 1 0 51 1 2 93 126 133 247 6 5 77 23 30 24 27 28 25 0 1 24 8 7 156 3 0 13 chain 43578 chr2 242193529 + 105048031 105048508 L1PA3long 6157 + 5677 6153 32393 147 1 0 329 chain 4128 chr2 242193529 + 105078957 105079062 MER106A 234 + 77 178 90602 36 21 19 24 1 2 5 2 0 10 1 0 5 chain 3507 chr2 242193529 + 105126692 105126747 MER41B 635 + 481 537 95188 26 5 6 24 chain 23753 chr2 242193529 + 105140916 105141175 L1PA2 6032 + 5773 6032 51190 259 chain 34488 chr2 242193529 + 105192797 105193325 L1PB4 2604 + 2087 2570 38362 262 4 1 5 0 3 19 17 13 162 41 0 18 chain 19874 chr2 242193529 + 105199603 105199916 THE1B 368 + 0 340 56573 8 0 1 19 1 2 14 0 15 109 1 0 30 36 46 86 0 1 9 chain 3362 chr2 242193529 + 105227292 105227329 MLT1C 463 + 57 94 96468 37 chain 116161 chr2 242193529 + 105250614 105252133 SVA_C 1631 + 0 1608 16195 17 2 0 7 4 0 472 37 0 87 76 0 66 3 1 33 0 3 32 0 37 43 0 82 30 4 0 8 1 0 27 1 0 2 0 92 212 3 1 276 0 4 76 chain 2573 chr2 242193529 + 105251116 105251153 SVA_C 1631 + 612 649 69422 37 chain 5488 chr2 242193529 + 105251240 105251313 SVA_C 1631 + 467 540 76889 49 10 10 14 chain 44987 chr2 242193529 + 105256689 105257235 MER41A 554 + 0 554 31592 24 0 1 68 0 1 10 0 1 79 1 2 222 0 4 142 chain 115984 chr2 242193529 + 105423607 105425018 L1PA7 6471 + 5041 6457 16239 153 1 0 4 6 7 309 1 0 42 2 1 36 0 1 542 0 1 43 0 5 113 18 0 8 0 18 133 chain 93221 chr2 242193529 + 105425025 105426056 LTR5A 1029 + 0 1029 19154 149 1 0 59 1 0 821 chain 45953 chr2 242193529 + 105467825 105468461 MER41B 635 + 0 635 31077 126 0 1 26 8 4 28 7 8 257 19 18 130 0 1 16 5 6 14 chain 29566 chr2 242193529 + 105686905 105687254 L1PA6 6164 + 5812 6162 42527 253 0 1 96 chain 19193 chr2 242193529 + 105724640 105725093 L1PB1 5432 + 5015 5402 57358 26 2 1 18 1 2 36 70 16 23 1 0 7 1 0 12 20 14 50 5 21 40 1 0 9 19 7 30 2 0 5 1 0 14 2 0 24 1 0 22 1 0 10 chain 67794 chr2 242193529 + 105817668 105818420 L1PA5 6144 + 5373 6126 24496 383 0 1 369 chain 40980 chr2 242193529 + 105921647 105922614 L1PA16 3655 + 2796 3589 33983 107 1 0 5 0 7 7 1 0 60 0 2 50 0 196 10 1 0 5 0 1 35 4 0 6 1 3 100 371 0 131 1 0 58 3 0 10 chain 6144 chr2 242193529 + 105945777 105945870 L1MB3 1562 + 1334 1425 80553 4 1 0 6 0 1 6 1 0 70 1 0 4 chain 62075 chr2 242193529 + 105986818 105987569 MER4E 760 + 0 752 25853 170 1 0 52 0 1 446 0 1 82 chain 48981 chr2 242193529 + 105989642 105990255 LTR14B 630 + 10 630 29960 302 0 3 140 0 4 171 chain 72803 chr2 242193529 + 105990462 105991450 HERVK14-int 1672 + 5 1458 23357 23 4 3 10 1 0 49 7 6 189 21 20 28 2 1 234 1 0 47 1 0 203 2 1 150 0 473 16 chain 49818 chr2 242193529 + 105994196 105994810 LTR14B 630 + 10 630 29631 9 0 2 434 0 4 171 chain 9382 chr2 242193529 + 106027164 106027279 L1PB4 2604 + 2169 2284 71741 115 chain 18156 chr2 242193529 + 106036826 106037058 L1PA7 6471 + 6231 6461 58506 89 0 1 76 3 1 34 2 1 28 chain 17620 chr2 242193529 + 106057841 106058049 L1PA7 6471 + 6256 6464 59102 208 chain 560929 chr2 242193529 + 106130892 106136914 L1PA2 6032 + 0 6021 150 3087 1 0 2934 chain 43089 chr2 242193529 + 106167732 106168587 MER41A 554 + 0 554 32722 134 307 0 169 0 1 164 1 6 80 chain 11970 chr2 242193529 + 106197239 106197382 THE1D 372 + 217 360 66884 143 chain 37918 chr2 242193529 + 106209213 106209705 LTR17 781 + 255 774 36123 19 4 10 43 1 0 401 12 34 12 chain 304842 chr2 242193529 + 106211192 106215025 HERV17-int 4347 + 817 4347 6725 140 4 5 140 0 2 366 1 2 90 1 0 702 0 3 419 0 1 83 0 1 153 0 1 88 0 1 183 0 1 261 6 8 562 316 0 318 chain 26735 chr2 242193529 + 106215333 106215676 LTR17 781 + 0 326 46631 57 25 0 134 1 9 126 chain 21447 chr2 242193529 + 106220861 106221118 AluY 311 + 29 287 54587 101 1 2 155 chain 74740 chr2 242193529 + 106234076 106237701 L1M1 2793 + 811 2650 22906 20 2 0 8 1 0 53 4 2 8 1 0 21 0 2 47 0 1 30 1 0 113 46 50 14 1 0 44 8 0 26 4 0 19 2 0 4 6 0 82 13 17 159 0 4 20 2343 600 34 0 1 82 0 1 4 2 1 56 0 1 11 0 1 68 12 10 9 1 0 69 29 0 99 4 5 22 1 0 6 1 0 15 chain 16879 chr2 242193529 + 106312536 106312744 L1PA7 6471 + 6266 6470 59931 32 5 0 15 1 2 155 chain 25514 chr2 242193529 + 106416909 106417272 MLT2A1 477 + 0 379 48462 65 1 0 77 6 7 19 1 5 160 21 33 13 chain 10661 chr2 242193529 + 106439963 106440098 L1MB8 1703 + 1439 1576 69112 43 0 2 92 chain 5492 chr2 242193529 + 106450027 106450089 AluSc 308 + 74 136 83268 62 chain 50815 chr2 242193529 + 106559737 106560320 LTR10C 591 + 6 591 29272 504 0 2 79 chain 17837 chr2 242193529 + 106573109 106573849 LTR24 460 + 0 460 58840 15 0 3 9 15 0 21 43 45 24 13 10 6 0 3 63 318 14 25 11 26 30 12 24 40 29 36 66 chain 4228 chr2 242193529 + 106585094 106585185 LTR12C 1709 + 676 1037 89952 42 8 102 17 7 183 17 chain 2594 chr2 242193529 + 106592558 106592619 MER63D 473 + 4 62 103040 16 22 19 23 chain 35676 chr2 242193529 + 106628204 106628665 LOR1a 498 + 0 498 37614 47 0 1 205 1 34 141 0 3 67 chain 105759 chr2 242193529 + 106663173 106664639 THE1D-int 1627 + 12 1618 17594 317 1 118 65 10 11 73 0 13 40 0 3 6 26 23 21 1 2 93 1 2 168 10 11 12 0 1 184 0 1 13 21 22 106 0 3 238 1 0 14 0 1 45 chain 28333 chr2 242193529 + 106768220 106768570 L1PB 1623 + 604 954 44364 350 chain 296788 chr2 242193529 + 106909865 106913395 L1P2 5180 + 660 4227 6932 127 8 6 140 0 25 450 6 1 6 0 5 970 0 4 166 1 0 616 0 1 517 1 10 187 0 1 335 chain 166996 chr2 242193529 + 106945312 106947187 L1PA4 6152 + 3619 5493 11269 61 3 2 1330 0 1 21 1 0 459 chain 27401 chr2 242193529 + 107014521 107014908 MLT2A1 477 + 0 397 45703 168 5 2 34 1 0 72 0 3 16 6 7 72 1 11 12 chain 23233 chr2 242193529 + 107043214 107043838 L1MA6 2487 + 1860 2402 52030 31 43 39 38 0 1 6 1 0 53 41 40 5 2 0 145 28 20 27 133 75 17 5 0 22 3 0 19 1 0 4 chain 173376 chr2 242193529 + 107051582 107053825 L1PA8 5853 + 3599 5853 10936 28 0 1 7 14 11 220 1 5 184 0 1 176 0 5 103 1 0 19 5 6 61 0 4 570 11 9 493 1 2 60 1 0 43 3 1 67 16 13 6 0 1 33 8 14 17 4 3 91 chain 24815 chr2 242193529 + 107155962 107156315 L1PA8 5853 + 5506 5853 49566 58 1 0 44 2 0 46 3 4 20 2 1 14 9 8 39 2 1 19 1 0 93 chain 52873 chr2 242193529 + 107189204 107189781 L1PA4 6152 + 4781 5358 28612 577 chain 293946 chr2 242193529 + 107235737 107239567 L1PA8 5853 + 108 5853 7012 121 1 0 4 0 1 64 12 15 92 1 3 232 3 0 17 1 0 6 0 1 55 11 32 247 24 1910 13 1 0 14 0 4 278 1 0 298 7 5 22 1 2 55 0 1 557 0 3 366 0 1 48 0 1 4 1 0 183 3 9 234 0 3 81 1 0 4 0 1 410 2 0 59 1 0 44 2 0 71 1 0 11 1 0 49 3 2 19 1 0 93 chain 17690 chr2 242193529 + 107271652 107271951 THE1D 372 + 66 372 59019 45 0 1 24 1 2 28 43 49 117 9 8 32 chain 5041 chr2 242193529 + 107392869 107393106 LTR12C 1709 + 928 1037 85463 39 112 21 16 43 6 27 chain 11090 chr2 242193529 + 107432895 107433015 L1PA2 6032 + 5909 6029 68425 120 chain 5634 chr2 242193529 + 107487474 107487579 MER44D 709 + 37 136 82639 13 24 18 68 chain 52857 chr2 242193529 + 107504161 107505113 PABL_A 660 + 0 658 28620 179 0 1 47 296 1 219 2 0 126 0 2 83 chain 87226 chr2 242193529 + 107572735 107573747 LTR13 1007 + 0 1007 20189 425 10 5 577 chain 84900 chr2 242193529 + 107586349 107587319 L1PA5 6144 + 5167 6135 20640 127 0 1 416 1 0 180 1 0 104 1 0 140 chain 23472 chr2 242193529 + 107603038 107603386 MER1A 529 + 144 525 51632 51 7 12 143 11 38 68 14 15 54 chain 51936 chr2 242193529 + 107603978 107604724 L1PA7 6471 + 5787 6467 28893 223 71 23 324 18 0 110 chain 32023 chr2 242193529 + 107620817 107621249 MER41-int 2638 + 2201 2636 40334 162 0 2 79 21 22 170 chain 44917 chr2 242193529 + 107667691 107668258 L1PA11 4918 + 3804 4376 31626 60 2 0 5 0 2 21 0 1 307 0 5 108 0 4 14 1 0 3 4 0 42 chain 38662 chr2 242193529 + 107725882 107726368 L1PA7 6471 + 5989 6470 35597 229 0 1 112 0 5 8 25 14 112 chain 75522 chr2 242193529 + 107795574 107796395 L1PA2 6032 + 5211 6032 22712 821 chain 206858 chr2 242193529 + 107968818 107971115 L1PA3long 6157 + 3854 6152 9474 392 0 1 1222 6 6 677 chain 107922 chr2 242193529 + 107978198 107979522 L1PA7 6471 + 5042 6365 17337 396 2 1 182 1 0 686 6 7 51 chain 18465 chr2 242193529 + 108032074 108032731 LTR12C 1709 + 873 1542 58141 149 41 0 33 23 70 34 333 339 44 chain 4523 chr2 242193529 + 108032354 108032408 LTR12C 1709 + 674 728 80363 54 chain 87808 chr2 242193529 + 108063564 108064551 L1PA5 6144 + 5143 6135 20081 150 0 5 458 0 1 11 1 0 367 chain 28408 chr2 242193529 + 108087922 108088274 THE1A 353 + 0 353 44256 19 0 1 90 1 0 82 0 1 160 chain 123718 chr2 242193529 + 108088274 108089853 THE1A-int 1579 + 0 1579 14895 310 8 7 250 0 1 123 1 0 287 13 14 587 chain 5947 chr2 242193529 + 108142462 108142548 L1PREC2 3366 + 2786 2867 81292 20 1 0 44 1 0 4 3 0 13 chain 14230 chr2 242193529 + 108157095 108157245 AluYg6 310 + 160 310 63290 150 chain 36726 chr2 242193529 + 108189401 108189886 LTR3B_ 500 + 12 500 36943 290 2 1 23 8 11 20 1 2 141 chain 4255 chr2 242193529 + 108192682 108192832 L1ME3A 1206 + 459 634 89798 21 83 108 46 chain 164427 chr2 242193529 + 108196799 108198639 L1PA4 6152 + 4000 5840 11462 1021 0 1 404 1 0 414 chain 9012 chr2 242193529 + 108208429 108214851 L1PA3long 6157 + 5318 6157 72532 404 5583 0 435 chain 4315 chr2 242193529 + 108257730 108257807 MER44A 345 + 237 308 89404 20 18 12 39 chain 3759 chr2 242193529 + 108278600 108278656 L1MB7 1623 + 1055 1110 93137 28 2 1 26 chain 3766 chr2 242193529 + 108279639 108279679 MER58A 224 + 42 82 93103 40 chain 5707 chr2 242193529 + 108299686 108299837 L1MB3 1562 + 1052 1197 82307 11 6 0 31 1 0 6 52 53 44 chain 124639 chr2 242193529 + 108311014 108312584 THE1B-int 1605 + 9 1605 14758 414 3 28 257 2 1 247 1 2 4 1 0 297 0 1 182 0 1 162 chain 51286 chr2 242193529 + 108315572 108316238 PABL_B 668 + 0 668 29136 78 0 5 95 5 3 7 0 1 29 3 4 15 1 0 44 1 0 126 6 3 108 0 2 148 chain 144600 chr2 242193529 + 108336330 108337930 L1PA4 6152 + 3753 5353 12719 1600 chain 23342 chr2 242193529 + 108352724 108353092 THE1C 375 + 0 375 51863 106 9 11 13 5 9 46 29 30 160 chain 80339 chr2 242193529 + 108359650 108361013 L1PB 1623 + 117 1165 21565 56 328 19 77 1 0 134 1 0 8 1 0 76 5 4 67 1 0 385 3 2 220 chain 28991 chr2 242193529 + 108373693 108374044 MER11C 1089 + 692 1052 43339 89 1 9 136 2 3 57 1 0 11 0 1 54 chain 517260 chr2 242193529 + 108429147 108436122 L1PA7 6471 + 0 6470 2414 411 0 1 7 0 1 499 1 2 520 0 4 112 6 10 192 0 3 273 3 76 52 0 4 326 1 0 480 0 2 574 2 6 98 0 11 146 1 0 19 0 1 380 0 2 459 0 4 656 306 2 288 1 0 28 9 4 14 3 1 131 313 0 198 7 9 4 1 0 395 0 6 59 chain 45249 chr2 242193529 + 108484840 108485334 L1PA2 6032 + 5538 6032 31449 494 chain 36015 chr2 242193529 + 108523895 108524357 LTR2 463 + 0 463 37404 57 5 6 248 1 0 48 15 16 88 chain 418147 chr2 242193529 + 108525930 108531004 Harlequin-int 5206 + 135 5206 4909 170 0 1 63 5 1 102 1 0 10 5 0 364 0 1 160 1 0 57 3 0 110 9 0 118 2 1 59 0 2 352 0 5 312 0 2 9 11 9 213 7 6 496 0 1 62 0 16 835 5 4 486 37 37 914 4 0 33 7 8 52 chain 35848 chr2 242193529 + 108531004 108531463 LTR2 463 + 0 463 37498 355 23 24 37 0 3 44 chain 48754 chr2 242193529 + 108543314 108543920 PABL_A 660 + 0 658 30030 105 0 1 118 0 44 52 0 5 184 0 2 147 chain 33175 chr2 242193529 + 108556636 108557047 LTR3B 427 + 0 423 39382 26 1 0 82 0 1 173 0 1 44 2 8 34 0 5 49 chain 19962 chr2 242193529 + 108635457 108635710 AluSg7 307 + 23 291 56449 37 1 15 56 0 1 159 chain 509410 chr2 242193529 + 108643201 108649945 L1PA7 6471 + 0 6438 2799 14 1 2 230 6 16 133 1 6 11 1 0 12 31 0 47 1 0 89 23 24 170 1 0 77 0 1 47 13 22 206 5 19 336 1 0 291 2 0 7 0 2 184 3 7 54 0 1 98 1 3 295 1 0 8 0 1 228 7 1 42 1 2 11 1 3 186 0 4 71 0 10 127 2 6 362 0 3 44 337 0 418 0 1 309 0 1 149 1 0 470 8 15 197 31 7 541 0 6 73 0 2 288 0 3 240 0 4 83 1 2 116 chain 14424 chr2 242193529 + 108727277 108727449 MER44C 733 + 450 622 63000 172 chain 8245 chr2 242193529 + 108762969 108763065 MER85 139 + 0 96 74303 96 chain 7007 chr2 242193529 + 109015787 109015871 Tigger2a 444 + 254 338 77583 84 chain 21196 chr2 242193529 + 109033678 109033970 AluSx1 309 + 8 297 54892 125 13 10 116 0 1 14 8 7 16 chain 11604 chr2 242193529 + 109091455 109091599 LTR8 732 + 587 730 67560 99 1 0 44 chain 7830 chr2 242193529 + 109118543 109118637 LTR22 571 + 477 571 75295 94 chain 206120 chr2 242193529 + 109309331 109311588 L1HS 6032 + 1844 4112 9501 361 0 11 1896 chain 61729 chr2 242193529 + 109535916 109536703 THE1B-int 1605 + 824 1605 25934 84 0 3 34 0 1 7 1 0 8 13 0 49 9 12 220 0 1 88 1 0 30 1 0 175 0 2 67 chain 33516 chr2 242193529 + 109555473 109555906 LTR3B_ 500 + 0 430 39073 179 7 0 118 6 5 73 1 6 49 chain 34144 chr2 242193529 + 109556787 109557179 L1PA5 6144 + 5751 6142 38605 140 1 0 251 chain 15269 chr2 242193529 + 109643286 109643470 MER41A 554 + 0 185 61955 95 0 1 89 chain 15600 chr2 242193529 + 109650546 109650906 THE1B 368 + 0 367 61534 106 127 134 30 0 1 35 18 17 44 chain 13079 chr2 242193529 + 109693749 109693915 MER4A1 472 + 278 458 64967 148 0 14 18 chain 16627 chr2 242193529 + 109694064 109694406 MSTA 426 + 5 362 60237 21 0 1 111 14 18 12 6 10 37 1 0 16 84 91 40 chain 2962 chr2 242193529 + 109694520 109694553 Tigger4a 237 + 138 171 100271 33 chain 3938 chr2 242193529 + 109728075 109728117 MLT1G1 539 + 236 278 91850 42 chain 261136 chr2 242193529 + 109940682 109944786 L1PB2 3958 + 25 3835 7935 27 1 0 4 14 10 18 12 7 10 15 10 29 2 0 17 0 6 17 1 0 47 1 0 3 2 0 68 9 10 21 8 7 131 1 0 5 5 6 225 9 10 121 7 9 60 0 1 14 2 1 4 0 1 285 1 0 35 6 7 51 1 0 36 0 5 145 5 21 41 6 9 23 1 0 15 1 0 236 1 5 180 16 42 367 4 7 49 3 0 56 0 10 5 6 1 257 0 5 107 5 4 160 326 0 78 14 10 56 9 10 64 2 0 57 1 0 11 5 0 65 2 0 7 9 5 18 0 4 42 0 1 29 1 0 72 1 0 64 1 0 58 7 8 6 2 0 22 1 0 60 chain 528122 chr2 242193529 + 109952960 109959093 L1PA6 6164 + 0 6159 1908 233 0 1 275 2 1 75 9 17 1208 0 2 584 0 2 165 1 0 4 0 1 433 5 6 178 1 0 4 1 2 1171 0 4 1162 0 1 571 6 10 36 0 4 9 chain 224802 chr2 242193529 + 110017554 110020011 L1PA3long 6157 + 3699 6157 8897 1607 0 1 363 0 1 153 1 0 333 chain 40593 chr2 242193529 + 110055095 110055580 LTR10D 510 + 8 510 34231 67 2 1 14 0 17 273 0 1 129 chain 75181 chr2 242193529 + 110056069 110057028 LTR5_Hs 974 + 0 960 22801 11 1 0 448 0 4 195 1 2 9 1 3 225 0 2 5 3 0 46 4 0 10 chain 185589 chr2 242193529 + 110073916 110075944 L1PA3long 6157 + 4128 6157 10318 1881 0 1 147 chain 81236 chr2 242193529 + 110082194 110083233 MER11C 1089 + 6 1059 21382 49 5 8 187 8 9 54 0 4 373 0 4 5 1 0 38 0 1 90 1 0 37 0 1 123 1 3 67 chain 409626 chr2 242193529 + 110107757 110113150 L1PB1 5432 + 19 5327 5026 29 7 8 244 0 3 93 6 5 5 0 2 126 3 2 125 1 0 5 0 1 63 3 0 35 0 1 629 1 0 7 2 0 5 3 0 137 1 5 397 0 2 25 25 5 232 0 2 227 0 1 60 6 4 1110 1 0 113 16 5 259 0 1 634 3 0 79 0 2 105 2 1 290 43 11 19 2 1 13 16 11 11 2 0 51 2 1 16 1 0 44 1 0 15 1 0 5 18 7 19 chain 2348 chr2 242193529 + 110109709 110109734 L1PB1 5432 + 2616 2641 100749 25 chain 213542 chr2 242193529 + 110135953 110138318 L1PA4 6152 + 3769 6143 9218 2120 0 1 110 1 4 128 0 5 6 chain 118805 chr2 242193529 + 110154391 110155942 THE1B-int 1605 + 17 1592 15744 148 2 0 257 7 34 146 1 2 5 1 0 176 0 1 120 1 0 11 10 11 92 2 0 393 0 1 4 2 1 65 5 4 11 0 1 92 chain 40607 chr2 242193529 + 110183143 110183639 MER9a3 513 + 15 513 34218 91 4 5 145 1 0 4 2 3 171 1 2 77 chain 128463 chr2 242193529 + 110186874 110188685 L1PA10 4194 + 2282 4114 14226 25 13 14 12 1 3 290 9 14 23 1 0 35 0 3 235 7 4 137 8 12 244 3 4 49 25 25 276 18 19 108 1 5 68 3 1 26 0 1 9 0 1 61 0 1 118 0 3 6 chain 468114 chr2 242193529 + 110191038 110196369 L1PA4 6152 + 10 5355 3905 424 7 14 1387 0 1 1328 0 1 1183 0 4 292 0 1 710 chain 54612 chr2 242193529 + 110218332 110219089 HERVH-int 3825 + 0 711 28007 491 1 0 39 6 1 39 1 0 10 1 0 9 8 4 10 60 28 24 2 1 41 1 0 14 chain 2397 chr2 242193529 + 110218947 110218972 HERVH-int 3825 + 545 570 96539 25 chain 262385 chr2 242193529 + 110238627 110242734 L1PB2 3958 + 25 3835 7899 27 1 0 4 14 10 18 12 7 10 15 10 29 2 0 17 0 6 17 1 0 47 1 0 3 2 0 68 9 10 21 8 7 131 1 0 5 5 6 225 9 10 121 7 9 60 0 1 14 2 1 4 0 1 285 1 0 35 6 7 51 1 0 36 0 5 145 5 21 41 6 9 16 1 0 22 1 0 421 16 42 367 4 7 49 3 0 56 0 10 5 6 1 257 0 5 107 5 4 160 325 0 78 14 10 56 9 10 64 2 0 57 1 0 11 5 0 65 2 0 7 9 5 18 0 4 42 0 1 29 1 0 72 1 0 64 1 0 58 7 8 6 2 0 22 1 0 60 chain 526980 chr2 242193529 + 110250925 110257059 L1PA6 6164 + 0 6159 1958 233 0 1 275 2 1 75 9 17 1208 0 2 584 0 2 165 1 0 4 0 1 433 5 6 170 3 1 11 1 2 1171 0 4 1162 0 1 571 6 10 36 0 4 9 chain 149476 chr2 242193529 + 110297435 110299093 L1PA3long 6157 + 2475 4129 12389 698 0 4 718 9 1 233 chain 108172 chr2 242193529 + 110306690 110308064 SVA_B 1603 + 0 1602 17296 13 1 0 11 1 25 465 116 0 113 3 0 5 3 4 50 0 40 17 0 281 119 1 0 13 0 3 443 chain 3621 chr2 242193529 + 110369166 110369205 LTR54 533 + 492 531 94265 39 chain 4720 chr2 242193529 + 110424797 110424867 LTR12F 595 + 47 130 87131 44 5 18 21 chain 51458 chr2 242193529 + 110440325 110440986 L1P3 4156 + 3479 4137 29063 622 17 14 22 chain 9961 chr2 242193529 + 110459098 110459621 L1MA6 2487 + 2141 2478 70503 86 21 5 25 136 86 15 1 0 4 0 6 8 3 0 22 185 63 17 chain 42933 chr2 242193529 + 110477273 110477825 LTR66 600 + 0 578 32819 192 2 0 34 5 6 84 0 1 86 8 0 37 0 33 90 0 1 14 chain 84724 chr2 242193529 + 110478021 110479807 L1MA2 4263 + 2906 4218 20678 38 0 1 160 1 0 105 1 0 232 335 0 10 1 0 26 0 1 95 6 0 10 7 3 74 12 11 125 42 39 112 0 15 72 2 0 23 7 0 47 1 0 9 201 74 16 4 2 12 chain 24909 chr2 242193529 + 110527322 110527683 MLT2A1 477 + 0 379 49417 89 0 1 52 6 7 20 0 4 160 21 33 13 chain 9548 chr2 242193529 + 110550394 110550527 L1MB8 1703 + 1439 1576 71371 43 0 2 37 1 3 52 chain 5370 chr2 242193529 + 110560456 110560518 AluSc 308 + 74 136 83846 62 chain 9188 chr2 242193529 + 110574285 110574386 L1PA2 6032 + 5931 6032 72143 101 chain 111066 chr2 242193529 + 110635527 110636795 L1PA5 6144 + 4861 6132 16929 174 0 3 40 1 2 214 1 0 838 chain 36901 chr2 242193529 + 110679296 110679797 LTR2C 499 + 0 499 36811 45 8 5 260 34 30 98 0 3 25 0 2 31 chain 53900 chr2 242193529 + 110687964 110688615 LTR6A 649 + 0 649 28255 435 1 0 193 0 1 9 2 0 11 chain 35230 chr2 242193529 + 110691824 110692262 LTR7C 471 + 0 471 37879 31 1 0 74 0 26 176 1 0 95 0 9 60 chain 43297 chr2 242193529 + 110695085 110695641 LTR19B 566 + 0 560 32575 301 0 1 21 10 14 157 0 2 21 7 4 39 chain 21662 chr2 242193529 + 110697181 110697502 L1P3 4156 + 1 321 54278 248 45 44 28 chain 51809 chr2 242193529 + 110697513 110698177 L1PA8 5853 + 5184 5847 28937 5 0 3 45 0 1 326 1 0 44 2 0 64 0 1 5 2 1 13 1 0 7 1 2 38 3 2 19 1 0 87 chain 4724 chr2 242193529 + 110702208 110702298 MER53 195 + 1 64 87102 54 27 0 9 chain 32453 chr2 242193529 + 110714820 110715220 MER57B1 401 + 0 399 39988 243 1 0 156 chain 48374 chr2 242193529 + 110746665 110747279 LTR71B 605 + 0 605 30161 137 2 0 5 4 3 8 5 0 120 2 0 10 0 1 321 chain 43294 chr2 242193529 + 110799635 110800271 LTR12F 595 + 0 595 32579 103 0 1 41 2 0 32 0 8 9 66 0 12 0 9 195 9 18 167 chain 271877 chr2 242193529 + 110916307 110919566 L1PA7 6471 + 3204 6467 7664 286 1 2 91 1 3 250 0 1 318 1 5 665 1 0 36 3 1 93 1 0 372 0 6 253 0 2 33 1 0 91 1 0 297 24 21 291 1 0 139 2 0 7 chain 112813 chr2 242193529 + 110929086 110930597 THE1B-int 1605 + 58 1605 16701 365 28 55 125 1 2 455 0 15 59 36 39 295 11 1 136 chain 14870 chr2 242193529 + 110939683 110939900 MER30 238 + 6 237 62425 88 0 1 12 13 29 59 3 0 42 chain 16738 chr2 242193529 + 111045406 111045623 THE1C 375 + 122 350 60111 8 0 3 67 1 4 16 0 3 72 0 2 53 chain 219503 chr2 242193529 + 111080512 111083194 L1PA7 6471 + 3799 6469 9055 140 0 1 64 7 6 225 1 2 718 1 0 299 2 5 362 5 0 77 1 3 194 30 18 44 0 1 362 1 2 139 2 0 8 chain 42064 chr2 242193529 + 111141206 111141669 L1PA2 6032 + 5561 6025 33315 456 0 1 7 chain 27029 chr2 242193529 + 111394743 111395099 THE1A 353 + 0 353 46228 87 1 0 23 1 0 90 4 3 150 chain 26281 chr2 242193529 + 111484649 111484941 AluYa5 310 + 19 310 47303 78 2 1 212 chain 3889 chr2 242193529 + 111490177 111490251 MLT1J 494 + 247 303 92223 45 18 0 11 chain 3566 chr2 242193529 + 111516108 111516247 MLT1F 544 + 353 496 94689 13 2 0 9 73 75 16 0 4 26 chain 24078 chr2 242193529 + 111563457 111563801 THE1A 353 + 0 353 50686 82 1 0 27 2 1 28 0 4 18 16 16 62 0 7 108 chain 125832 chr2 242193529 + 111563801 111565361 THE1A-int 1579 + 0 1574 14580 151 0 1 472 3 0 253 4 5 291 0 1 171 5 20 197 1 0 12 chain 28450 chr2 242193529 + 111565366 111565721 THE1A 353 + 0 353 44194 81 5 4 26 1 0 242 chain 18351 chr2 242193529 + 111587995 111588247 Tigger1 2417 + 877 1138 58303 178 4 12 19 7 8 44 chain 249657 chr2 242193529 + 111588847 111591612 L1PA4 6152 + 3355 6152 8247 138 0 4 10 0 1 139 0 9 31 0 2 251 0 1 397 0 13 524 0 1 1267 0 1 8 chain 26481 chr2 242193529 + 111609335 111609809 MER66B 489 + 0 489 47007 151 4 45 11 41 0 79 1 0 47 63 80 58 1 0 18 chain 9688 chr2 242193529 + 111612454 111612571 LTR37A 408 + 270 387 71083 117 chain 28795 chr2 242193529 + 111641908 111642220 AluYa5 310 + 0 309 43634 97 3 0 212 chain 4809 chr2 242193529 + 111649801 111649904 L1MB4 1306 + 735 839 86651 21 1 2 7 6 0 25 7 14 8 1 0 27 chain 114478 chr2 242193529 + 111672041 111673490 SVA_B 1603 + 6 1603 16478 13 0 8 15 33 5 416 1 3 48 116 0 195 1 0 4 0 281 153 1 0 58 0 3 395 chain 136880 chr2 242193529 + 111681667 111683253 LTR12C 1709 + 0 1709 13348 650 0 119 68 1 0 275 1 0 5 3 1 106 0 4 154 0 1 57 0 1 169 0 2 97 chain 20536 chr2 242193529 + 111713661 111713897 L1PA5 6144 + 5897 6135 55735 97 0 1 97 0 1 42 chain 5871 chr2 242193529 + 111760601 111760679 LTR2C 499 + 419 499 81592 19 1 3 58 chain 24462 chr2 242193529 + 111783231 111783589 THE1D 372 + 0 372 50091 102 1 0 58 0 1 9 40 54 148 chain 76948 chr2 242193529 + 111885396 111886231 L1PA3long 6157 + 5311 6152 22330 292 0 6 543 chain 23988 chr2 242193529 + 111889514 111889811 AluSq10 312 + 11 297 50811 96 1 0 21 6 0 159 4 0 10 chain 38563 chr2 242193529 + 111891027 111891530 MER9a3 513 + 2 513 35669 11 0 2 134 2 0 23 6 14 72 1 0 177 0 1 77 chain 46877 chr2 242193529 + 111909197 111909848 PABL_A 660 + 0 660 30706 50 1 5 272 3 0 181 0 3 47 27 31 29 9 10 32 chain 16025 chr2 242193529 + 111909860 111910065 L1MA5A 2387 + 1828 2033 60999 205 chain 20931 chr2 242193529 + 111955884 111956126 L1PA5 6144 + 5900 6144 55218 230 1 3 11 chain 6623 chr2 242193529 + 111991924 111992042 MER21A 919 + 57 174 78889 31 0 13 25 2 0 25 16 4 19 chain 2916 chr2 242193529 + 112034273 112034305 U2 167 + 0 32 100697 32 chain 26322 chr2 242193529 + 112040228 112040659 LTR7 482 + 0 466 47236 74 60 12 15 16 66 57 5 37 104 1 2 99 chain 84833 chr2 242193529 + 112049134 112050138 LTR13 1007 + 0 1007 20653 73 2 0 308 2 3 244 2 1 64 0 5 309 chain 33351 chr2 242193529 + 112143973 112144430 MER75 514 + 38 504 39218 49 0 4 9 11 15 122 8 9 258 chain 120502 chr2 242193529 + 112178317 112180030 L1PA14 3548 + 1740 3440 15446 425 3 4 29 0 1 118 12 25 88 0 1 104 2 1 141 1 0 6 9 5 232 26 23 10 2 0 37 10 8 7 2 0 109 8 4 13 9 6 13 0 1 17 0 1 163 16 12 35 4 2 12 1 0 5 7 6 10 1 0 26 chain 20422 chr2 242193529 + 112223022 112223270 L1PA5 6144 + 5897 6144 55861 97 0 1 137 3 1 11 chain 11636 chr2 242193529 + 112245704 112245850 Tigger1 2417 + 915 1064 67502 124 0 3 22 chain 3300 chr2 242193529 + 112267689 112267783 L1ME2z 1083 + 843 935 97015 26 40 38 28 chain 25538 chr2 242193529 + 112299005 112299293 AluY 311 + 10 299 48426 122 0 1 166 chain 25508 chr2 242193529 + 112381881 112382243 MLT2A1 477 + 0 379 48472 65 1 0 24 0 1 52 6 7 20 0 4 160 21 33 13 chain 5370 chr2 242193529 + 112415031 112415093 AluSc 308 + 74 136 83845 62 chain 9006 chr2 242193529 + 112428858 112428957 L1PA2 6032 + 5931 6030 72545 99 chain 5528 chr2 242193529 + 112450808 112450903 MLT1F2 592 + 42 138 83121 54 14 15 27 chain 22504 chr2 242193529 + 112465069 112465369 AluSp 311 + 0 301 53114 59 0 4 69 10 7 162 chain 7425 chr2 242193529 + 112676216 112676303 MSTB 430 + 330 417 76325 87 chain 23813 chr2 242193529 + 112677345 112677650 AluSp 311 + 0 301 51079 128 4 0 173 chain 8839 chr2 242193529 + 112696237 112696425 L1MB3 1562 + 1388 1552 72892 32 48 24 23 1 2 55 1 0 28 chain 34476 chr2 242193529 + 112849111 112849557 MER4A1 472 + 5 472 38375 242 18 39 186 chain 34580 chr2 242193529 + 112849883 112850319 LTR2 463 + 0 463 38297 61 0 3 66 0 4 28 7 27 274 chain 178035 chr2 242193529 + 112857503 112859928 L1PA7 6471 + 4318 6469 10676 217 0 1 38 1 0 4 0 1 308 0 1 70 0 35 218 3 2 118 320 2 113 0 2 175 0 5 70 0 2 389 0 1 368 2 0 11 chain 202468 chr2 242193529 + 112860403 112863078 MER4-int 2692 + 1 2692 9617 10 1 0 25 2 0 80 4 0 8 2 1 73 0 1 23 0 3 125 0 3 97 18 12 27 1 2 91 0 1 142 11 2 52 3 18 115 10 0 285 0 3 224 2 1 10 0 3 116 5 15 41 0 4 95 0 1 126 0 2 75 1 0 93 15 16 74 0 2 32 0 2 6 1 0 150 2 1 180 0 1 222 chain 31144 chr2 242193529 + 112863086 112863541 MER4A1 472 + 0 472 41021 171 0 1 75 18 39 99 27 22 65 chain 5383 chr2 242193529 + 112898292 112898353 Charlie1b 519 + 451 512 83783 61 chain 54711 chr2 242193529 + 112901556 112902207 PABL_A 660 + 0 660 27970 82 1 10 568 chain 79657 chr2 242193529 + 112934253 112935221 LTR5_Hs 974 + 0 974 21704 121 3 1 119 0 1 46 0 1 315 0 1 217 16 23 26 2 0 103 chain 11808 chr2 242193529 + 112935356 112935510 L1PA8A 6298 + 6136 6291 67189 53 1 2 100 chain 5030 chr2 242193529 + 112949655 112949730 MER6 865 + 199 278 85510 32 7 11 36 chain 28986 chr2 242193529 + 112988874 112989292 L1PA8 5853 + 5422 5853 43352 98 0 1 43 1 0 44 2 0 65 7 6 14 1 0 43 2 5 22 1 0 33 1 7 15 2 11 24 chain 7322 chr2 242193529 + 113086804 113086891 U6 107 + 0 87 76593 87 chain 21567 chr2 242193529 + 113140890 113141179 AluSp 311 + 4 299 54412 185 0 3 55 4 5 24 3 5 18 chain 5136 chr2 242193529 + 113160047 113160127 MADE1 96 + 0 96 84986 23 10 26 47 chain 131195 chr2 242193529 + 113393844 113396024 SVA_F 1814 + 335 1814 13902 406 0 40 118 275 0 49 0 15 43 303 0 132 178 0 676 chain 2550 chr2 242193529 + 113394368 113394398 SVA_F 1814 + 1012 1043 82014 26 0 1 4 chain 13060 chr2 242193529 + 113394405 113394641 SVA_F 1814 + 937 1138 56196 10 1 15 51 49 0 125 chain 4276 chr2 242193529 + 113394467 113394516 SVA_F 1814 + 1140 1189 58103 49 chain 1291 chr2 242193529 + 113394773 113394826 SVA_F 1814 + 607 660 72529 53 chain 15284 chr2 242193529 + 113394850 113395021 SVA_F 1814 + 1122 1291 61934 55 1 0 97 1 0 17 chain 12237 chr2 242193529 + 113395170 113395348 SVA_F 1814 + 962 1089 61527 66 51 0 61 chain 119510 chr2 242193529 + 113402046 113403401 L1PA5 6144 + 4779 6138 15605 298 5 7 807 0 1 102 3 4 140 chain 20286 chr2 242193529 + 113415817 113416118 THE1C 375 + 7 325 56032 16 0 1 40 10 19 31 8 6 158 1 10 37 chain 21774 chr2 242193529 + 113426157 113426488 THE1B 368 + 0 356 54131 44 5 20 10 0 1 97 4 3 23 32 42 116 chain 21292 chr2 242193529 + 113428064 113428387 THE1B 368 + 0 368 54778 40 1 16 112 1 0 30 35 45 81 5 26 18 chain 10013 chr2 242193529 + 113487148 113487300 Tigger3c 601 + 373 520 70397 24 17 16 13 4 0 94 chain 334965 chr2 242193529 + 113488126 113492621 L1PB1 5432 + 62 5419 6144 78 1 0 266 1 0 94 0 7 27 15 11 383 0 2 100 0 9 193 0 1 16 0 8 35 0 1 111 13 1 140 0 4 226 1 3 253 0 1 56 1 0 89 10 16 53 1 0 6 7 8 32 0 2 78 0 8 47 0 11 13 16 25 13 8 0 93 0 3 78 0 1 108 0 4 65 2 1 193 1 4 84 0 1 41 2 832 68 1 0 354 0 6 129 8 7 64 4 7 180 1 0 291 1 2 10 7 0 23 1 0 8 1 0 11 5 1 9 2 0 53 3 1 15 1 0 41 8 7 12 14 1 25 6 5 5 1 0 14 2 0 24 1 0 19 0 7 23 chain 4965 chr2 242193529 + 113516727 113516788 MER20 218 + 5 67 85827 37 0 1 24 chain 3712 chr2 242193529 + 113608154 113608197 MER72 723 + 680 723 93516 43 chain 446628 chr2 242193529 + 113656151 113662246 L1PA4 6152 + 0 5192 4447 97 1 7 153 0 1 322 1 0 156 2 0 34 0 128 245 0 2 91 1 0 605 1038 0 553 2 1 106 0 1 1007 0 1 636 0 1 1045 chain 7624 chr2 242193529 + 113681111 113681204 U6 107 + 1 94 75811 93 chain 167871 chr2 242193529 + 113682177 113684091 L1PA5 6144 + 3846 5774 11220 264 0 9 1175 0 5 475 chain 29384 chr2 242193529 + 113690869 113691241 THE1C 375 + 0 375 42759 180 0 1 71 0 1 41 0 2 54 1 0 25 chain 40947 chr2 242193529 + 113698228 113698775 L1PA8 5853 + 5298 5853 34003 51 0 11 176 0 1 25 1 0 48 4 3 66 1 0 61 2 1 15 6 5 85 0 1 6 chain 24270 chr2 242193529 + 113726972 113727334 THE1D 372 + 3 372 50390 60 0 1 57 7 11 30 0 1 23 37 38 148 chain 20981 chr2 242193529 + 113827147 113827407 L1PA7 6471 + 6208 6470 55149 135 0 4 116 2 0 7 chain 3698 chr2 242193529 + 113935658 113935707 MER104 178 + 88 136 93620 18 1 0 30 chain 4339 chr2 242193529 + 113981662 113981749 MER53 195 + 0 94 89238 32 8 12 19 6 9 22 chain 4178 chr2 242193529 + 113990014 113990094 MADE1 96 - 0 96 90273 23 20 36 37 chain 41397 chr2 242193529 + 114005716 114006400 L1PB1 5432 + 4750 5404 33736 260 7 6 87 1 2 10 7 0 23 1 0 9 1 0 9 2 0 3 2 0 8 2 0 53 2 1 15 1 0 20 15 24 12 20 5 28 2 0 6 1 0 15 2 0 24 1 0 21 1 0 13 chain 12196 chr2 242193529 + 114007817 114007990 Tigger3a 397 + 143 312 66482 9 0 1 4 1 0 123 5 1 31 chain 9671 chr2 242193529 + 114027230 114027344 MER58D 378 + 245 359 71115 114 chain 48366 chr2 242193529 + 114033647 114034294 PABL_A 660 + 0 660 30164 204 1 2 24 1 0 71 6 23 14 1 2 76 3 0 16 0 1 145 3 0 82 chain 67382 chr2 242193529 + 114058880 114059637 L1PA4 6152 + 5381 6138 24602 757 chain 7397 chr2 242193529 + 114076041 114076133 MLT1C 463 + 32 124 76401 92 chain 62076 chr2 242193529 + 114131803 114132583 L1PA8 5853 + 5055 5847 25852 353 0 18 138 1 0 46 2 0 72 26 25 33 2 1 19 1 0 87 chain 13964 chr2 242193529 + 114164181 114164646 MLT2B2 565 + 18 565 63639 74 1 0 13 4 0 26 80 90 38 10 161 9 73 0 46 33 43 8 10 0 15 7 6 18 chain 207719 chr2 242193529 + 114286779 114289116 L1PA4 6152 + 3177 5517 9431 510 0 4 1800 1 0 26 chain 302545 chr2 242193529 + 114312947 114317009 HERVL-int 5654 + 1525 5609 6771 36 4 5 37 4 8 105 1 0 4 0 1 92 8 7 21 45 46 18 0 2 391 10 21 405 14 17 65 15 14 200 6 7 328 0 3 66 1 0 4 0 1 670 5 7 20 17 14 574 27 26 689 4 0 23 0 1 124 0 3 29 chain 103543 chr2 242193529 + 114335591 114336791 L1PA4 6152 + 2498 3686 17872 749 0 4 35 0 1 200 10 0 3 7 0 196 chain 2590 chr2 242193529 + 114352574 114352633 MIRb 242 + 39 99 103062 18 16 17 25 chain 3022 chr2 242193529 + 114359480 114359595 MER5B 177 - 29 142 99635 16 1 0 23 59 58 16 chain 12398 chr2 242193529 + 114365704 114365873 L1PA8 5853 + 5693 5853 66142 7 7 0 40 2 1 19 1 0 93 chain 171212 chr2 242193529 + 114393506 114395506 L1PA6 6164 + 4154 6156 11037 884 0 1 273 0 4 115 4 0 400 0 1 324 chain 4991 chr2 242193529 + 114420128 114420186 U2 167 + 0 58 85697 58 chain 49918 chr2 242193529 + 114479511 114480068 L1PA4 6152 + 4786 5348 29595 211 0 1 306 0 4 40 chain 31984 chr2 242193529 + 114593982 114594394 MLT2A1 477 + 0 406 40356 137 0 1 29 2 6 149 2 1 62 6 0 14 4 0 7 chain 56596 chr2 242193529 + 114613420 114614134 L1PA8 5853 + 5149 5853 27390 169 0 2 59 5 0 185 1 0 46 2 0 69 1 0 22 2 1 38 2 1 19 1 0 93 chain 8005 chr2 242193529 + 114648257 114648368 LTR40b 463 + 350 463 74875 49 1 3 61 chain 71430 chr2 242193529 + 114669890 114670690 L1PA3long 6157 + 5367 6157 23666 388 11 1 401 chain 59726 chr2 242193529 + 114733933 114734688 MER4E 760 + 0 752 26454 26 0 1 138 7 0 98 0 6 92 4 0 62 0 1 328 chain 53142 chr2 242193529 + 114739931 114740517 L1PA3long 6157 + 5571 6157 28518 572 1 0 6 0 1 7 chain 123523 chr2 242193529 + 114803337 114804905 THE1A-int 1579 + 0 1573 14931 70 1 0 358 0 1 50 1 0 286 11 2 272 4 0 15 0 6 41 0 1 50 0 10 181 12 13 22 7 8 187 chain 27187 chr2 242193529 + 114804910 114805264 THE1A 353 + 0 353 45989 111 1 0 98 1 4 5 3 0 135 chain 3495 chr2 242193529 + 114857673 114857713 MADE1 96 + 51 91 95280 40 chain 103016 chr2 242193529 + 114897368 114898508 L1PA3long 6157 + 5016 6157 17950 8 0 1 1132 chain 6401 chr2 242193529 + 114937731 114937805 5S 121 + 18 92 79669 74 chain 464645 chr2 242193529 + 115004356 115009583 L1PA3long 6157 + 0 6152 4002 152 0 1 211 0 1 403 8 136 112 0 1 1900 0 795 276 7 5 1990 5 7 17 5 4 141 chain 11988 chr2 242193529 + 115009634 115009784 L1PA7 6471 + 6318 6465 66855 141 3 0 6 chain 2462 chr2 242193529 + 115016724 115016755 L1PA3long 6157 + 5368 5399 103850 31 chain 41889 chr2 242193529 + 115016755 115017217 L1PA3long 6157 + 5695 6157 33429 462 chain 63592 chr2 242193529 + 115017246 115018011 L1PA5 6144 + 5377 6142 25463 434 2 1 159 1 2 169 chain 67813 chr2 242193529 + 115018011 115018863 L1PA7 6471 + 5614 6461 24490 5 3 0 81 0 2 339 0 2 93 0 1 8 8 2 160 1 2 7 3 1 144 chain 53888 chr2 242193529 + 115085859 115086950 MER4E1 777 + 0 777 28260 10 2 1 12 0 2 73 0 8 94 43 44 6 1 0 296 18 9 23 317 0 95 0 3 101 chain 21722 chr2 242193529 + 115144589 115144825 L1PA3long 6157 + 5921 6157 54203 236 chain 4524 chr2 242193529 + 115149803 115149858 MER53 195 + 108 163 88187 55 chain 2929 chr2 242193529 + 115221532 115221563 MER58C 217 + 160 191 100604 31 chain 21813 chr2 242193529 + 115333921 115334181 L1PA5 6144 + 1407 1666 54085 20 1 0 239 chain 21191 chr2 242193529 + 115383151 115383493 THE1B 368 + 0 366 54899 43 6 21 107 1 0 27 41 51 117 chain 6412 chr2 242193529 + 115385197 115385274 MER39 703 + 335 412 79629 77 chain 97980 chr2 242193529 + 115455373 115456559 L1PA7 6471 + 4866 6059 18528 736 0 4 8 0 3 61 1 0 4 10 11 366 chain 168009 chr2 242193529 + 115487079 115488893 L1HS 6032 + 4218 6032 11213 1814 chain 13071 chr2 242193529 + 115556285 115556451 MER30 238 + 36 209 64982 73 6 0 18 0 13 69 chain 13036 chr2 242193529 + 115617549 115617797 Tigger3a 397 + 142 397 65054 57 36 40 87 28 31 40 chain 63182 chr2 242193529 + 115632889 115633591 L1PA5 6144 + 5442 6144 25581 702 chain 10214 chr2 242193529 + 115877423 115877556 L1PA8 5853 + 5715 5846 69983 25 2 1 19 1 0 86 chain 24482 chr2 242193529 + 115898554 115898857 AluSp 311 + 3 300 50059 265 7 1 31 chain 33452 chr2 242193529 + 115914935 115915423 MER9a3 513 + 1 513 39129 17 0 2 90 0 1 68 13 14 19 12 22 22 1 0 38 1 11 125 6 7 76 chain 45417 chr2 242193529 + 115949338 115949907 L1PA7 6471 + 5900 6469 31354 236 2 3 174 0 9 7 9 0 56 2 1 83 chain 9759 chr2 242193529 + 115995711 115995832 MSTA-int 1630 + 1484 1611 70913 24 0 6 97 chain 42368 chr2 242193529 + 116011470 116012052 L1PA8 5853 + 5265 5841 33149 149 0 4 146 1 0 44 4 2 65 5 4 13 10 6 42 2 1 19 4 3 78 chain 25079 chr2 242193529 + 116028690 116029062 LTR8 732 + 222 625 49151 19 0 2 69 9 36 156 0 5 18 21 18 80 chain 305279 chr2 242193529 + 116036256 116039676 L1PA4 6152 + 2720 6151 6716 58 1 8 2520 0 4 841 chain 22797 chr2 242193529 + 116086891 116087166 AluY 311 + 28 299 52663 104 0 1 157 5 0 9 chain 30907 chr2 242193529 + 116119322 116119695 THE1A-int 1579 + 2 375 41213 373 chain 12489 chr2 242193529 + 116140278 116140420 L1PA5 6144 + 5990 6132 66002 142 chain 23389 chr2 242193529 + 116163397 116163694 THE1A 353 + 0 301 51783 35 0 5 70 1 0 191 chain 24427 chr2 242193529 + 116165256 116165572 THE1A-int 1579 + 1254 1571 50132 76 8 7 4 0 1 38 0 1 190 chain 19048 chr2 242193529 + 116165582 116165842 THE1A 353 + 2 261 57499 109 16 15 135 chain 3286 chr2 242193529 + 116165853 116165894 THE1A 353 + 278 319 97142 41 chain 5256 chr2 242193529 + 116175682 116175747 MER53 195 + 125 190 84411 65 chain 220000 chr2 242193529 + 116234072 116236868 L1PA7 6471 + 3640 6470 9041 60 9 18 37 0 1 147 66 6 7 0 3 61 0 1 4 1 0 49 11 15 220 1 0 212 0 4 548 0 1 267 1 66 257 0 8 81 1 4 90 1 0 501 1 0 6 1 0 6 1 0 12 0 1 137 chain 3318 chr2 242193529 + 116242739 116242777 5S 121 + 2 40 96857 38 chain 42220 chr2 242193529 + 116251351 116251846 MER9a2 513 + 0 494 33236 14 1 0 480 chain 257780 chr2 242193529 + 116252465 116255631 HERVK9-int 4720 + 6 4720 8033 15 1 0 8 19 7 13 8 5 4 1 0 66 1 0 8 1 0 30 1 0 68 1 2 1167 0 2 95 0 924 231 9 649 8 3 0 366 1 0 217 0 1 442 1 0 49 0 1 228 0 4 104 chain 40672 chr2 242193529 + 116255631 116256139 MER9a2 513 + 0 513 34169 19 1 0 124 0 1 83 4 9 277 chain 71954 chr2 242193529 + 116260275 116261134 MER11D 897 + 2 890 23554 493 0 4 24 0 2 67 2 25 273 chain 50732 chr2 242193529 + 116268161 116268807 LTR6A 649 + 3 649 29300 174 1 0 5 1 2 251 1 0 193 0 1 20 chain 278021 chr2 242193529 + 116282593 116286229 HERV9-int 5642 + 1552 5642 7487 24 0 1 4 16 15 199 6 505 406 5 0 6 44 49 252 0 1 44 1 0 216 7 5 633 9 4 433 2 1 699 0 4 5 4 0 102 0 1 67 7 6 66 0 1 5 1 0 151 12 10 28 19 17 12 2 1 17 2 0 43 1 0 13 34 11 13 4 0 3 2 0 17 chain 80353 chr2 242193529 + 116288173 116289070 MER11D 897 + 0 897 21561 897 chain 34944 chr2 242193529 + 116289138 116289614 LTR12F 595 + 0 595 38062 71 26 1 28 0 143 122 1 2 228 chain 30074 chr2 242193529 + 116318470 116318875 LTR15 485 + 0 478 41986 25 0 4 34 7 8 76 0 33 96 0 4 146 0 31 21 chain 443966 chr2 242193529 + 116358437 116363939 L1PA7 6471 + 0 6420 4496 123 25 29 88 0 871 45 0 1 174 22 23 112 2 4 298 12 9 860 1 2 67 0 4 122 1 2 423 0 3 248 0 1 40 6 10 44 2 3 600 2 1 95 2 1 507 0 5 204 8 1 377 0 1 194 0 1 26 0 9 4 1 0 54 0 18 446 7 11 158 1 0 101 chain 132116 chr2 242193529 + 116399711 116401670 L1PA10 4194 + 1174 3149 13821 119 0 5 192 1 2 28 3 0 5 0 3 18 0 1 85 4 0 15 15 21 89 4 3 66 1 2 101 8 21 33 6 0 151 14 17 41 0 1 29 0 4 227 0 10 137 73 65 12 22 27 118 5 0 303 17 7 17 chain 25586 chr2 242193529 + 116406464 116406800 THE1B 368 + 0 348 48340 44 0 15 110 1 0 31 13 11 137 chain 13557 chr2 242193529 + 116523872 116524114 L1PREC2 3366 + 1533 1770 64246 44 8 4 8 0 2 7 22 15 32 1 4 93 5 6 22 chain 9539 chr2 242193529 + 116529499 116529691 MER41A 554 + 334 552 71393 112 64 90 16 chain 379768 chr2 242193529 + 116552825 116557931 L1PA5 6144 + 0 6144 5485 118 10 24 14 0 12 28 7 18 4 1 0 8 0 1 94 1 0 379 1 2 452 0 3 12 9 0 504 1 0 640 6 1 850 2 0 11 0 1 77 0 1 182 5 17 231 0 1 257 513 1516 342 0 1 170 2 1 59 1 0 104 2 0 9 chain 46702 chr2 242193529 + 116572754 116573350 L1PA8 5853 + 3471 4065 30771 7 4 0 142 0 1 46 0 1 397 chain 28553 chr2 242193529 + 116577360 116577668 AluYa5 310 + 0 307 44027 132 1 0 175 chain 37238 chr2 242193529 + 116602920 116603348 L1PA7 6471 + 5186 5614 36593 428 chain 69571 chr2 242193529 + 116603348 116604192 L1PA7 6471 + 5617 6466 24102 83 0 2 231 0 1 522 0 2 8 chain 42535 chr2 242193529 + 116604192 116604730 THE1A-int 1579 + 845 1579 33041 140 14 211 327 1 0 56 chain 7912 chr2 242193529 + 116612659 116612756 MER84 505 + 27 125 75087 43 0 1 54 chain 136123 chr2 242193529 + 116623924 116625597 L1PA7 6471 + 4787 6468 13426 252 0 1 253 1 0 4 14 16 311 2 0 74 0 2 487 0 6 275 chain 80184 chr2 242193529 + 116642536 116643434 L1PA3long 6157 + 5251 6151 21592 132 0 2 766 chain 7107 chr2 242193529 + 116654431 116654897 L1M1 2793 + 540 893 77238 15 9 4 12 1 0 7 2 1 10 3 0 10 35 20 16 96 30 37 59 45 18 96 88 40 chain 18112 chr2 242193529 + 116681968 116682181 L1PA6 6164 + 5947 6160 58553 213 chain 4004 chr2 242193529 + 116682334 116682379 Tigger3b 1229 + 156 201 91426 45 chain 5693 chr2 242193529 + 116699895 116700034 MER47B 469 + 173 362 82379 16 56 106 67 chain 45108 chr2 242193529 + 116717116 116717782 LTR66 600 + 0 600 31524 11 7 9 79 5 1 66 0 1 170 71 0 70 0 6 50 0 3 13 3 0 121 chain 31702 chr2 242193529 + 116718082 116718724 HERVL66-int 1251 + 191 737 40578 61 28 0 47 21 1 17 14 9 12 61 34 29 0 1 96 1 0 55 18 7 30 7 4 42 5 4 38 1 0 59 chain 44445 chr2 242193529 + 116720903 116721589 LTR66 600 + 0 599 31859 200 1 0 135 71 0 68 0 6 44 2 1 16 17 0 13 3 0 20 0 1 34 2 1 60 chain 261898 chr2 242193529 + 116754969 116758671 MER61-int 3695 + 0 3695 7914 26 8 4 20 1 0 24 0 1 94 62 23 80 1 0 77 8 12 11 1 0 9 1 6 23 1 2 95 12 13 17 7 6 23 0 1 8 0 11 56 16 12 69 0 1 8 1 0 302 16 14 202 0 1 30 1 0 138 14 13 64 0 4 102 14 22 157 6 7 343 0 1 327 6 13 204 6 7 10 15 16 59 1 0 95 1 0 37 1 0 55 0 1 110 0 2 7 9 8 65 1 0 4 2 0 4 0 1 20 0 2 433 0 1 82 chain 48144 chr2 242193529 + 116806741 116807268 L1PA3long 6157 + 5628 6155 30241 527 chain 79180 chr2 242193529 + 116824145 116825038 L1PA4 6152 + 5259 6152 21811 240 0 1 311 0 1 226 0 1 107 3 0 6 chain 42668 chr2 242193529 + 116886434 116887001 L1PA8 5853 + 5290 5850 32963 274 1 0 44 2 0 73 1 0 11 1 0 48 2 1 19 1 0 90 chain 4591 chr2 242193529 + 116894912 116894966 THE1D-int 1627 + 449 503 87839 54 chain 102592 chr2 242193529 + 116909119 116910275 L1PA4 6152 + 4987 6143 17996 1156 chain 126186 chr2 242193529 + 116931172 116932573 L1PA3long 6157 + 4752 6152 14526 1310 1 0 90 chain 291063 chr2 242193529 + 116981968 116985510 L1PA6 6164 + 428 6157 7100 83 1 0 1651 0 2177 287 0 9 17 0 5 227 0 2 164 0 1 70 0 1 14 12 13 141 0 5 451 0 1 378 14 0 32 chain 47962 chr2 242193529 + 116989283 116989800 L1PA2 6032 + 5499 6016 30311 517 chain 498290 chr2 242193529 + 117001151 117007272 L1PA6 6164 + 1 6160 3192 159 1 2 32 1 2 313 2 1 60 4 10 110 0 5 105 0 17 18 3 0 403 0 1 195 0 3 888 0 1 74 0 1 88 5 6 779 0 2 417 0 4 14 2 0 7 1 0 43 1 2 135 32 42 110 2 1 164 0 4 16 0 1 54 0 1 188 27 10 561 0 1 1100 0 2 7 chain 47027 chr2 242193529 + 117079783 117080318 L1PA5 6144 + 5609 6144 30648 535 chain 41629 chr2 242193529 + 117087562 117088119 LTR19B 566 + 0 566 33607 102 0 3 301 0 1 4 1 0 62 6 10 10 0 5 19 11 8 41 chain 62600 chr2 242193529 + 117109280 117110040 LTR17 781 + 0 781 25732 320 8 7 399 2 24 31 chain 28410 chr2 242193529 + 117133155 117133525 HERVH-int 3825 + 3449 3825 44254 39 19 20 52 3 8 257 chain 541652 chr2 242193529 + 117156034 117162044 L1PA2 6032 + 0 6031 1225 74 0 1 157 0 4 18 0 3 60 1 0 516 0 4 283 0 1 1144 0 1 3590 0 2 151 0 6 16 chain 19903 chr2 242193529 + 117185045 117185265 L1PA2 6032 + 5812 6032 56529 220 chain 90010 chr2 242193529 + 117226812 117227833 L1PA4 6152 + 4052 5073 19681 752 5 0 7 1 6 256 chain 190471 chr2 242193529 + 117233789 117236096 L1PA7 6471 + 4122 6454 10092 14 5 6 521 0 8 276 0 1 70 0 1 573 0 2 27 1 0 216 0 1 4 4 3 17 0 1 501 5 16 33 0 1 40 chain 41509 chr2 242193529 + 117278752 117279203 LTR7 482 + 0 482 33669 260 0 31 191 chain 297727 chr2 242193529 + 117279205 117282774 HERVH-int 3825 + 0 3825 6896 489 2 0 45 11 6 30 1 0 10 1 0 24 29 0 8 2 40 4 1 0 42 2 1 43 6 5 7 0 2 7 0 2 13 0 3 37 1 2 865 4 31 299 0 10 1067 0 3 25 8 218 117 0 1 369 chain 43969 chr2 242193529 + 117284028 117284509 LTR7 482 + 0 482 32148 225 0 1 256 chain 44221 chr2 242193529 + 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63 2 0 12 4 0 22 0 2 70 1 0 72 2 0 64 1 0 53 chain 514927 chr2 242193529 + 117525395 117531072 L1PA2 6032 + 10 6032 2522 838 1 26 14 0 1 223 0 1 959 1 0 84 0 4 2813 0 315 578 5 0 7 4 9 150 chain 44094 chr2 242193529 + 117548188 117548677 L1PA3long 6157 + 5667 6157 32088 82 0 1 407 chain 6818 chr2 242193529 + 117549601 117549698 MSTA-int 1630 + 0 95 78252 74 7 5 16 chain 113049 chr2 242193529 + 117566148 117569144 L1PA7 6471 + 5072 6470 16669 59 0 1 343 1 0 68 5 3 78 4 0 45 1592 0 537 0 5 6 5 0 253 chain 62366 chr2 242193529 + 117567588 117568332 L1PA5 6144 + 5421 6138 25784 58 27 0 659 chain 412488 chr2 242193529 + 117579242 117584661 L1P2 5180 + 2 4982 4996 143 6 5 43 8 7 8 0 1 38 1 0 268 2 1 43 8 7 221 1 0 6 2 1 1206 1 0 228 5 10 341 0 3 362 6 7 220 449 0 12 1 0 763 0 1 407 0 4 272 2 4 162 0 2 184 chain 91228 chr2 242193529 + 117599828 117600899 L1PA6 6164 + 5100 6155 19460 173 1 0 371 16 0 111 0 1 399 chain 535362 chr2 242193529 + 117623253 117629270 L1PA3long 6157 + 0 6152 1603 131 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4 1701 2 6 71 0 4 97 0 3 481 1 0 251 chain 11276 chr2 242193529 + 117938416 117938566 L1PA2 6032 + 5901 6032 68123 82 0 1 37 20 0 11 chain 121319 chr2 242193529 + 118163928 118165501 THE1B-int 1605 + 0 1600 15292 423 1 0 5 14 39 63 2 1 377 0 3 264 11 12 413 chain 4537 chr2 242193529 + 118200290 118200348 L1MA4 2864 + 2432 2492 88116 50 0 2 8 chain 7319 chr2 242193529 + 118286921 118287013 MER53 195 - 103 195 76604 92 chain 475605 chr2 242193529 + 118410163 118415711 L1PA6 6164 + 558 6156 3734 9 1 0 240 0 17 262 0 3 760 3 5 248 0 1 51 0 7 164 0 1 263 0 3 17 1 0 574 1 2 4 0 1 228 0 1 61 0 3 783 0 9 352 0 2 1125 0 1 401 chain 25165 chr2 242193529 + 118471299 118471586 AluY 311 + 17 307 49015 109 0 1 137 0 2 41 chain 136906 chr2 242193529 + 118486471 118487949 L1PA2 6032 + 4554 6032 13344 1478 chain 14814 chr2 242193529 + 118507564 118507766 L1PA8 5853 + 5651 5849 62506 28 1 0 12 1 0 49 2 1 19 2 1 88 chain 22713 chr2 242193529 + 118542949 118543268 THE1B 368 + 0 328 52812 44 5 20 108 1 0 8 0 1 4 1 0 11 4 0 98 1 0 34 chain 123523 chr2 242193529 + 118543299 118544895 THE1B-int 1605 + 0 1600 14932 430 1 26 8 0 1 11 6 7 4 1 0 700 5 0 190 18 1 209 0 1 4 1 0 8 chain 56721 chr2 242193529 + 118564117 118564841 MER4A 717 + 1 717 27351 47 0 1 4 1 0 70 7 0 369 1 0 225 chain 57249 chr2 242193529 + 118637288 118637988 L1PA8A 6298 + 4847 5545 27180 16 0 1 347 0 1 129 4 2 146 11 9 47 chain 102088 chr2 242193529 + 118702738 118703879 L1PA5 6144 + 3947 5088 18054 929 0 1 4 1 0 207 chain 32798 chr2 242193529 + 118707796 118708439 L1PA15 4387 + 3736 4356 39672 77 2 0 14 4 0 10 0 1 52 2 0 43 1 0 90 68 69 12 1 0 27 9 8 46 1 0 23 14 9 50 6 3 27 17 18 12 8 2 27 chain 25200 chr2 242193529 + 118760923 118761359 L1MA3 4352 + 3926 4321 48948 162 48 18 6 3 0 93 0 1 26 9 5 21 2 0 24 2 1 5 1 0 29 1 0 4 chain 5071 chr2 242193529 + 118790678 118790740 MLT1A0 366 + 267 329 85304 62 chain 392087 chr2 242193529 + 118954636 118960078 L1PB1 5432 + 19 5404 5289 29 25 26 243 1 2 72 49 15 196 1 0 15 0 1 23 2 0 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405 461 88942 56 chain 14834 chr2 242193529 + 119355607 119355811 MER1B 344 + 134 343 62472 133 17 22 54 chain 4682 chr2 242193529 + 119422667 119422722 MER34A1 583 + 461 516 87373 55 chain 33619 chr2 242193529 + 119505483 119505856 L1PA4 6152 + 5768 6141 38985 373 chain 23562 chr2 242193529 + 119519532 119519839 AluSx4 309 + 8 309 51487 115 1 0 148 10 5 33 chain 10991 chr2 242193529 + 119529250 119529417 LTR56 451 + 146 314 68567 45 19 20 103 chain 13244 chr2 242193529 + 119529427 119529567 AluYb8 318 + 165 305 64718 140 chain 545320 chr2 242193529 + 119618289 119625031 L1PA7 6471 + 0 6469 1018 403 0 2 453 9 10 1481 1 0 282 6 1 9 305 0 75 0 8 14 1 4 78 0 1 277 1 5 103 0 1 176 20 42 17 2 1 393 1 0 638 0 1 49 0 2 429 1 0 333 1 0 333 1 0 836 3 1 11 chain 295072 chr2 242193529 + 119664440 119668414 L1PA8A 6298 + 2607 6292 6982 242 4 5 531 14 17 16 6 12 335 3 0 91 2 1 4 0 1 9 0 1 104 1 2 284 342 8 160 8 26 530 3 1 228 0 8 164 0 4 81 0 4 12 10 8 72 0 2 97 0 1 304 0 1 266 8 10 43 chain 3133 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120031346 LTR8 732 + 582 724 68006 6 0 4 132 chain 366581 chr2 242193529 + 120067982 120072940 L1PA7 6471 + 0 6470 5718 402 3 78 213 21 1734 24 1 2 176 336 3 84 0 8 33 0 4 252 16 20 270 0 1 135 0 5 92 21 0 63 0 2 403 7 1 660 0 8 253 2 54 297 0 1 53 2 0 80 1 2 100 32 24 72 5 8 232 1 6 51 1 0 388 28 27 135 1 2 12 chain 99267 chr2 242193529 + 120157800 120159142 L1PA13 3608 + 1908 3274 18380 41 0 1 4 5 14 14 0 3 99 3 2 73 4 6 16 1 2 323 25 34 587 2 1 21 13 10 99 0 4 12 chain 289936 chr2 242193529 + 120185694 120188888 L1PA4 6152 + 2954 6151 7129 982 1 4 2211 chain 8128 chr2 242193529 + 120192253 120192355 HY1 111 + 9 111 74574 102 chain 108774 chr2 242193529 + 120192550 120193751 L1PA3long 6157 + 4956 6157 17209 214 0 1 727 1 0 259 chain 93217 chr2 242193529 + 120234571 120235677 L1PA7 6471 + 5367 6470 19156 253 1 4 8 1 0 87 8 3 748 chain 36127 chr2 242193529 + 120280240 120280712 L1PA8 5853 + 5380 5853 37325 184 1 0 15 0 4 27 2 0 65 15 13 52 2 1 19 1 0 43 3 7 43 chain 11746 chr2 242193529 + 120283189 120283391 MER30 238 + 0 238 67318 15 15 33 60 8 23 58 4 7 42 chain 96681 chr2 242193529 + 120491905 120493006 L1PA5 6144 + 5032 6132 18694 952 0 7 13 8 0 128 chain 3303 chr2 242193529 + 120774739 120774776 MER102c 337 + 235 272 96990 37 chain 21467 chr2 242193529 + 120795775 120796030 AluSp 311 + 8 268 54556 166 6 11 83 chain 7396 chr2 242193529 + 120838692 120838812 Tigger3a 397 + 42 211 76403 33 15 64 72 chain 5344 chr2 242193529 + 121097322 121097384 MER41D 557 + 0 62 83985 62 chain 17084 chr2 242193529 + 121194190 121194376 L1PA5 6144 + 5795 5981 59719 186 chain 4042 chr2 242193529 + 121251546 121251620 L1MA8 2339 + 2124 2196 91139 23 15 13 36 chain 7514 chr2 242193529 + 121394200 121394293 MLT1E1A 663 + 164 257 76096 93 chain 41225 chr2 242193529 + 121439638 121440109 L1PA2 6032 + 5573 6032 33827 287 0 1 157 13 0 14 chain 100946 chr2 242193529 + 121464958 121466056 L1PA3long 6157 + 3933 5031 18192 1098 chain 229616 chr2 242193529 + 121548719 121552434 L1PA14 3548 + 90 3485 8756 58 11 0 55 7 6 8 1 0 9 13 12 30 2 0 15 12 1 13 16 14 10 8 1 101 0 1 33 1 0 181 1 2 95 2 0 11 1 0 171 0 1 125 319 10 264 0 5 129 36 37 130 0 3 178 0 21 160 6 7 181 0 1 68 1 16 20 11 14 167 0 1 80 2 1 19 0 1 133 1 0 143 0 1 53 1 0 52 9 4 58 2 0 5 2 0 19 0 8 74 15 12 13 1 13 6 14 0 68 15 14 100 14 9 38 4 2 12 5 3 18 1 0 41 6 0 10 1 0 20 chain 112733 chr2 242193529 + 121602202 121604015 L1MA5A 2387 + 630 2306 16719 31 0 1 153 0 9 21 4 5 43 2 0 527 19 24 58 108 1 55 24 9 75 7 6 112 3 0 210 7 13 27 0 1 22 0 1 4 1 3 10 39 38 18 1 0 48 2 0 20 0 1 8 2 0 14 0 2 15 11 8 9 28 0 64 1 0 10 chain 41088 chr2 242193529 + 121639882 121640377 L1PA6 6164 + 5667 6162 33912 495 chain 71565 chr2 242193529 + 121672948 121675905 L1PBa 3878 + 1723 3734 23643 187 0 2 161 311 0 76 1660 1025 48 17 13 302 0 3 175 2 1 18 chain 8007 chr2 242193529 + 121683939 121687211 MER61D 487 + 118 389 74870 86 3020 2 65 81 98 20 chain 12124 chr2 242193529 + 121702479 121702624 LTR8 732 + 572 717 66618 145 chain 24834 chr2 242193529 + 121730261 121730546 AluSp 311 + 11 297 49535 130 0 1 155 chain 20853 chr2 242193529 + 121780548 121780806 L1PA5 6144 + 5887 6144 55303 102 0 1 142 3 1 11 chain 28105 chr2 242193529 + 121812293 121812650 THE1A 353 + 0 353 44710 84 3 1 21 5 4 92 1 0 151 chain 123429 chr2 242193529 + 121812651 121814206 THE1A-int 1579 + 1 1579 14955 321 5 8 264 0 20 667 1 0 288 0 1 9 chain 27998 chr2 242193529 + 121814206 121814561 THE1A 353 + 0 353 44866 109 2 1 92 1 0 151 chain 16360 chr2 242193529 + 121817291 121817501 L1P4 1494 + 730 957 60560 57 7 22 133 0 2 13 chain 5438 chr2 242193529 + 121828903 121828970 MER63B 433 + 47 114 83519 67 chain 156860 chr2 242193529 + 121892094 121893792 SVA_F 1814 + 0 1814 11950 184 0 1 701 0 115 4 1 0 172 1 0 4 1 0 88 6 9 536 chain 6305 chr2 242193529 + 121950802 121950878 MLT1A 405 + 314 389 79980 20 1 0 55 chain 108160 chr2 242193529 + 122038622 122039858 L1PA5 6144 + 3819 5063 17299 60 1 0 472 9 11 576 0 7 118 chain 15184 chr2 242193529 + 122058916 122059104 MER30 238 + 30 234 62059 77 4 20 107 chain 4715 chr2 242193529 + 122172850 122172920 MIR 256 + 55 121 87167 19 4 0 47 chain 42704 chr2 242193529 + 122246115 122246650 L1PA7 6471 + 5931 6469 32944 65 0 1 120 0 10 71 2 1 258 7 0 12 chain 82944 chr2 242193529 + 122252972 122254052 L1PBa 3878 + 1358 2422 21030 24 0 2 221 31 10 259 1 4 544 chain 7299 chr2 242193529 + 122287091 122287188 L1MA4 2864 + 2599 2693 76668 71 4 1 22 chain 32690 chr2 242193529 + 122287326 122287736 MER1A 529 + 102 521 39771 50 0 10 305 1 0 54 chain 10148 chr2 242193529 + 122306522 122306705 L1PA15 4387 + 4199 4366 70111 7 4 0 10 2 1 50 6 3 46 2 0 9 9 4 27 1 0 10 chain 40732 chr2 242193529 + 122312938 122313444 L1PA5 6144 + 5621 6128 34133 285 0 1 75 5 0 6 8 13 127 chain 24279 chr2 242193529 + 122441256 122441556 AluY 311 + 6 307 50375 137 3 0 7 0 3 54 7 8 92 chain 31250 chr2 242193529 + 122494867 122495297 L1P1 4361 + 2865 3274 40930 262 18 4 29 7 0 114 chain 40448 chr2 242193529 + 122513641 122514113 L1PA3long 6157 + 5684 6157 34350 318 3 7 143 3 0 5 chain 525100 chr2 242193529 + 122550744 122556806 L1PA5 6144 + 2 6131 2044 391 1 31 178 6 10 137 0 1 552 0 16 96 0 3 441 1 3 521 0 1 1966 0 4 103 3 4 127 0 1 40 1 0 94 1 1 574 0 4 177 0 1 517 0 1 33 2 1 100 chain 33168 chr2 242193529 + 122584166 122584579 L1PA6 6164 + 5745 6161 39390 270 2 3 133 0 2 8 chain 5604 chr2 242193529 + 122589099 122589170 MLT1B 390 + 45 116 82788 71 chain 18578 chr2 242193529 + 122631564 122631801 AluSc 308 + 30 266 58020 93 2 1 142 chain 55384 chr2 242193529 + 122668597 122669225 L1PA2 6032 + 5413 6032 27746 21 8 0 502 0 1 84 2 0 11 chain 11772 chr2 242193529 + 122676437 122676652 MER30 238 + 1 238 67266 17 15 22 58 12 0 10 1 28 16 0 6 8 6 0 72 chain 6698 chr2 242193529 + 122695241 122695333 L1MA3 4352 + 3876 3967 78645 29 1 0 62 chain 89504 chr2 242193529 + 122722212 122723589 L1PBa1 4058 + 2683 4039 19758 81 0 1 117 5 7 223 0 1 134 0 1 56 1 0 131 1 0 112 37 22 97 1 0 6 8 7 12 5 1 9 1 0 4 0 20 8 0 10 7 0 9 91 3 1 22 18 0 10 6 0 12 2 0 19 2 1 4 1 0 7 3 0 13 27 23 5 1 0 5 1 0 9 1 0 16 5 4 38 chain 22989 chr2 242193529 + 122760834 122761179 THE1B 368 + 0 368 52377 44 0 15 113 3 2 26 2 0 13 0 3 12 23 31 109 chain 433316 chr2 242193529 + 122772503 122778218 L1PA8 5853 + 111 5853 4700 191 39 26 124 11 20 53 3 0 124 0 1 177 17 18 18 0 26 58 0 1 334 0 3 261 0 5 36 0 1 100 0 1 42 1 0 4 21 1 282 12 0 377 0 1 8 8 9 55 6 5 151 7 8 245 11 10 492 11 29 160 0 1 648 1 0 39 4 15 137 0 1 460 0 1 140 2 0 67 1 0 5 0 2 268 0 1 89 1 2 77 1 3 34 5 4 48 2 0 68 2 1 9 1 0 52 2 1 19 2 1 92 chain 62805 chr2 242193529 + 122782951 122783649 L1PA5 6144 + 4250 4948 25680 698 chain 27418 chr2 242193529 + 122783649 122783955 L1P1 4361 + 3868 4173 45680 282 1 0 23 chain 11867 chr2 242193529 + 122798943 122799123 Tigger2a 444 + 53 240 67083 23 1 2 26 3 0 5 3 6 23 0 6 96 chain 271329 chr2 242193529 + 122808052 122812212 L1PBa1 4058 + 17 4040 7677 18 18 15 6 1 0 374 5 3 140 0 1 4 9 8 32 5 4 20 21 47 84 0 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40354 51 4 1 15 1 0 5 9 7 198 5 4 84 1 0 68 5 0 30 0 4 7 chain 172351 chr2 242193529 + 123393619 123395814 L1P3 4156 + 1944 4135 10981 140 8 0 548 23 0 212 0 29 614 3 0 324 0 1 21 0 1 20 22 23 230 2 0 7 2 1 8 0 1 11 chain 204837 chr2 242193529 + 123423552 123425878 L1PA4 6152 + 2962 5299 9544 214 1 2 344 0 6 819 0 4 948 chain 44064 chr2 242193529 + 123462558 123463051 L1PA4 6152 + 5659 6152 32104 493 chain 11033 chr2 242193529 + 123464932 123465148 MER30 238 + 0 236 68509 17 41 41 49 9 0 7 0 32 44 3 0 46 chain 201498 chr2 242193529 + 123470952 123473604 MER4-int 2692 + 1 2692 9661 10 1 0 26 22 20 42 1 0 9 1 0 7 0 3 5 1 0 590 6 5 60 0 13 42 0 2 150 0 2 5 8 5 397 0 20 39 1 0 20 0 2 118 0 5 86 1 0 424 6 9 7 2 0 34 0 3 115 0 1 24 1 0 391 chain 35148 chr2 242193529 + 123473612 123474065 MER4A1 472 + 0 456 37929 226 10 11 107 0 2 110 chain 28954 chr2 242193529 + 123507471 123507854 MLT2A1 477 + 0 477 43400 87 3 4 51 0 1 18 7 11 183 0 89 13 1 0 20 chain 15568 chr2 242193529 + 123525284 123525514 L1PA8 5853 + 5621 5847 61566 58 1 0 14 7 5 46 1 0 16 1 0 23 1 2 62 chain 17892 chr2 242193529 + 123536737 123536940 L1PA3long 6157 + 5954 6157 58768 203 chain 162614 chr2 242193529 + 123541307 123543468 L1PA8 5853 + 3736 5853 11569 344 10 1 252 4 1 161 2 0 287 0 6 30 6 7 57 34 1 40 0 1 26 0 1 56 0 2 78 1 0 90 1 0 338 6 7 40 1 0 46 3 1 70 1 0 4 13 12 45 2 1 19 2 1 92 chain 21898 chr2 242193529 + 123586456 123586708 L1PA4 6152 + 5871 6125 53969 5 0 2 247 chain 541382 chr2 242193529 + 123628724 123634739 L1PA3long 6157 + 8 6157 1246 144 0 1 624 1 129 713 1 0 977 0 3 610 0 1 2939 0 2 6 chain 53243 chr2 242193529 + 123662287 123663081 MER4E1 777 + 0 769 28487 24 0 1 128 1 0 4 21 0 16 0 1 4 1 0 15 1 0 51 1 0 4 4 5 72 6 5 58 5 0 28 3 0 121 1 7 96 21 22 4 1 0 103 chain 42316 chr2 242193529 + 123681642 123682170 LTR6B 557 + 0 557 33178 39 1 27 293 0 1 121 18 20 56 chain 143733 chr2 242193529 + 123683590 123686371 LTR12C 1709 + 0 1709 12789 485 1 0 89 1 0 76 755 0 187 1 0 17 320 4 253 1 0 6 2 0 107 0 4 100 0 1 380 chain 9944 chr2 242193529 + 123684242 123684420 LTR12C 1709 + 769 946 39781 68 1 0 109 chain 10817 chr2 242193529 + 123684420 123684640 LTR12C 1709 + 668 769 36357 93 119 0 8 chain 1724 chr2 242193529 + 123684513 123684545 LTR12C 1709 + 1080 1112 65045 32 chain 3464 chr2 242193529 + 123684570 123684632 LTR12C 1709 + 1018 1080 39781 62 chain 8411 chr2 242193529 + 123684640 123684845 LTR12C 1709 + 650 854 33454 187 1 0 17 chain 7474 chr2 242193529 + 123684845 123684997 LTR12C 1709 + 895 1088 36357 82 0 41 70 chain 12104 chr2 242193529 + 123685202 123685497 LTR12C 1709 + 895 1112 33454 117 78 0 100 chain 3073 chr2 242193529 + 123685337 123685397 LTR12C 1709 + 1118 1178 48698 60 chain 1812 chr2 242193529 + 123685497 123685522 LTR12C 1709 + 674 699 45785 25 chain 38001 chr2 242193529 + 123688999 123690110 HERVS71-int 4705 + 3281 4342 36072 18 17 11 9 1 0 5 1 0 27 28 16 7 0 6 16 1 0 18 7 5 51 25 20 6 1 0 29 4 3 30 5 2 51 6 4 16 1 0 35 1 0 13 3 1 5 1 0 12 24 18 29 6 4 7 2 0 4 1 0 26 12 8 20 6 4 6 1 0 33 4 1 22 1 0 5 21 18 17 20 23 23 2 1 36 2 1 11 3 1 10 27 22 46 1 0 6 16 14 11 2 0 17 2 0 8 2 0 21 119 81 19 0 62 10 chain 42636 chr2 242193529 + 123690996 123691521 LTR6B 557 + 0 557 32977 39 4 31 131 0 1 152 0 1 92 5 6 42 0 1 4 0 1 56 chain 49981 chr2 242193529 + 123756054 123756608 L1PA5 6144 + 5586 6140 29568 554 chain 41525 chr2 242193529 + 123852585 123853085 MER9a1 513 + 0 504 33666 156 0 3 86 0 1 258 chain 279070 chr2 242193529 + 123856132 123860150 L1PA10 4194 + 175 4161 7450 10 2 0 7 2 1 6 3 0 11 30 22 9 5 4 5 1 0 14 102 71 21 71 62 65 3 1 392 27 15 45 5 6 70 7 8 239 6 5 198 0 2 393 2 3 24 0 4 150 2 4 474 1 2 111 0 5 36 9 13 63 1 0 8 0 3 25 8 34 143 1 0 813 2 1 31 0 1 204 5 0 107 3 0 34 2 1 10 chain 78374 chr2 242193529 + 123889772 123890850 MER11B 1079 + 0 1079 22010 220 0 5 129 3 6 65 13 12 297 27 17 16 0 2 51 5 6 46 0 1 15 0 1 160 2 1 29 chain 11348 chr2 242193529 + 123991731 123991888 L1PA8A 6298 + 6133 6290 68009 45 11 11 101 chain 35525 chr2 242193529 + 124095030 124095510 L1PA8 5853 + 5379 5853 37703 35 1 2 148 1 0 44 2 0 70 2 1 9 2 1 55 1 0 16 2 1 92 chain 518284 chr2 242193529 + 124122949 124129065 L1PA5 6144 + 2 6138 2351 123 1 15 13 6 18 240 3 0 758 9 0 264 1 0 661 0 1 1081 1 0 103 1 0 61 1 9 153 1 0 710 0 1 645 6 7 5 1 0 424 1 0 192 1 2 501 2 9 6 7 0 134 chain 556665 chr2 242193529 + 124139780 124145807 L1PA2 6032 + 5 6032 317 2632 0 1 423 7 6 2965 chain 52770 chr2 242193529 + 124249065 124249798 MER4E 760 + 6 753 28650 17 0 1 124 0 10 8 1 0 6 6 0 33 15 17 64 1 5 71 1 3 37 0 5 127 4 0 93 9 10 116 chain 73695 chr2 242193529 + 124259711 124260562 L1PA4 6152 + 4334 5185 23171 295 1 0 217 8 9 330 chain 20719 chr2 242193529 + 124327410 124327803 MER4B 649 + 65 500 55469 43 14 22 68 13 36 110 1 16 33 62 58 49 chain 550431 chr2 242193529 + 124407870 124413885 L1PA2 6032 + 1 6023 714 254 2 1 494 2 0 533 0 9 798 7 4 136 1 3 1097 0 2 2691 chain 46992 chr2 242193529 + 124457766 124458657 L1PB1 5432 + 4668 5420 30667 432 119 12 17 6 5 13 1 0 11 4 0 9 2 0 53 25 23 26 104 85 16 1 0 20 2 1 13 1 0 16 chain 64201 chr2 242193529 + 124460981 124461682 L1PA3long 6157 + 5451 6152 25372 701 chain 5326 chr2 242193529 + 124473944 124474024 MADE1 96 + 0 96 84068 44 4 20 32 chain 20685 chr2 242193529 + 124578027 124578348 AluSq10 312 + 0 301 55519 109 1 0 19 19 0 45 32 0 9 6 38 81 chain 156474 chr2 242193529 + 124857992 124860067 L1PA5 6144 + 3919 6142 11969 431 1 3 100 0 3 20 0 2 22 272 413 1229 chain 5075 chr2 242193529 + 124923698 124923760 MLT1E1A 663 + 601 663 85278 62 chain 6650 chr2 242193529 + 124927821 124928108 LTR12 884 + 139 391 78810 24 22 27 15 17 0 24 6 47 28 77 34 15 24 5 20 2 0 13 chain 7711 chr2 242193529 + 124995096 124995259 LTR29 598 + 45 232 75597 37 8 6 8 1 0 4 1 0 5 10 14 52 9 34 14 1 0 13 chain 7940 chr2 242193529 + 125037625 125037940 LTR12D 1347 + 651 1000 75025 47 197 231 71 chain 114270 chr2 242193529 + 125080484 125081802 L1PA5 6144 + 3715 5024 16509 660 0 1 246 10 0 402 chain 22852 chr2 242193529 + 125102238 125102517 L1PA6 6164 + 5880 6162 52576 75 0 3 44 2 0 6 0 1 9 0 1 143 chain 28612 chr2 242193529 + 125127901 125128224 L1P1 4361 + 3995 4318 43930 156 1 0 129 0 2 23 1 0 13 chain 13723 chr2 242193529 + 125131019 125131235 Tigger1 2417 + 2145 2368 63987 68 17 19 12 5 8 77 0 2 37 chain 95681 chr2 242193529 + 125132838 125134059 L1PA11 4918 + 3033 4260 18814 177 0 1 24 0 1 190 0 1 25 0 6 208 1 0 377 3 1 216 chain 100544 chr2 242193529 + 125159237 125160566 L1PA13 3608 + 1618 2944 18229 279 1 0 438 26 23 422 0 1 163 chain 50606 chr2 242193529 + 125174134 125174715 LTR10C 591 + 0 584 29346 185 0 1 324 0 2 72 chain 28740 chr2 242193529 + 125260212 125260539 L1PA3long 6157 + 5815 6150 43724 197 0 7 95 0 1 35 chain 28553 chr2 242193529 + 125270468 125270865 L1PA8 5853 + 5463 5853 44026 57 0 4 38 1 0 48 2 0 54 4 0 14 12 10 52 2 1 19 1 0 93 chain 66543 chr2 242193529 + 125281479 125282288 L1PA7 6471 + 5646 6465 24806 64 1 0 81 1 0 120 0 1 224 0 1 89 0 10 229 chain 124402 chr2 242193529 + 125303255 125304627 L1PA3long 6157 + 4778 6157 14792 1156 0 7 216 chain 19033 chr2 242193529 + 125356829 125357119 L1PA8 5853 + 5569 5849 57518 39 2 0 70 12 10 56 1 0 15 3 2 12 7 3 73 chain 370252 chr2 242193529 + 125357970 125362386 L1PA3long 6157 + 620 5043 5650 20 5 19 48 0 8 108 18 19 39 27 0 331 1 0 6 2 3 16 1 0 222 2 3 1727 5 4 494 0 1 1243 0 11 101 chain 11325 chr2 242193529 + 125405625 125405922 L1MA4 2864 + 1595 1886 68043 71 117 113 13 9 8 68 1 0 18 chain 34927 chr2 242193529 + 125418127 125418503 L1PA2 6032 + 5647 6023 38071 376 chain 148997 chr2 242193529 + 125422063 125423772 LTR12C 1709 + 0 1709 12418 271 2 0 566 1 0 274 1 0 6 2 0 107 0 4 146 0 2 333 chain 40126 chr2 242193529 + 125472597 125473028 L1PA2 6032 + 5600 6032 34575 95 0 1 336 chain 25944 chr2 242193529 + 125477372 125477739 THE1B 368 + 0 368 47802 42 11 12 120 10 9 8 0 2 101 1 0 74 chain 29599 chr2 242193529 + 125590935 125591340 L1PA8 5853 + 5450 5847 42484 114 2 1 39 5 4 70 2 1 11 3 0 50 2 1 22 1 0 84 chain 15106 chr2 242193529 + 125615868 125616212 L1PB1 5432 + 5114 5427 62148 24 8 6 14 5 1 9 2 0 42 16 15 11 1 0 45 1 0 15 1 0 6 15 6 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 14 1 0 5 1 0 4 chain 366872 chr2 242193529 + 125622954 125627543 L1PA7 6471 + 1830 6461 5714 75 1 7 123 8 7 63 7 8 230 2 3 173 0 2 45 0 1 72 0 3 6 1 0 28 0 19 104 0 25 168 0 9 496 1 0 764 8 7 117 0 1 188 1 0 4 0 1 38 0 1 1003 1 0 62 5 4 25 0 3 105 0 1 229 26 1 410 chain 36789 chr2 242193529 + 125631357 125632013 LTR12_ 688 + 0 688 36890 90 9 25 133 60 59 224 2 17 32 83 85 23 chain 42733 chr2 242193529 + 125660437 125661002 MLT2A2 560 + 0 544 32930 32 21 0 303 5 6 157 1 0 46 chain 35780 chr2 242193529 + 125710589 125711055 LTR7C 471 + 0 471 37544 206 11 15 228 7 8 14 chain 53836 chr2 242193529 + 125728577 125729406 LTR12 884 + 0 884 28275 119 0 25 126 0 1 5 2 1 44 41 0 18 2 3 36 2 0 247 10 13 10 40 7 72 4 106 51 chain 45089 chr2 242193529 + 125752527 125753003 L1HS 6032 + 5556 6032 31532 476 chain 167424 chr2 242193529 + 125767525 125769419 L1PA5 6144 + 4250 6144 11249 237 0 1 889 1 0 767 chain 549166 chr2 242193529 + 125825536 125831674 L1PA3long 6157 + 6 6157 802 325 0 3 3553 0 1 109 0 3 1110 0 1 94 0 4 521 0 1 426 chain 3550 chr2 242193529 + 125855334 125855413 MADE1 96 - 0 96 94842 19 7 8 10 12 28 31 chain 8443 chr2 242193529 + 125891441 125891541 MLT2A1 477 + 302 402 73814 100 chain 52517 chr2 242193529 + 125933591 125934187 L1P1 4361 + 2905 3504 28723 22 0 3 574 chain 30190 chr2 242193529 + 125969112 125969514 L1PA8A 6298 + 5893 6290 41862 55 7 5 130 1 0 5 0 1 61 0 1 28 1 0 34 5 2 75 chain 25455 chr2 242193529 + 125976970 125977324 L1PA8 5853 + 5505 5853 48550 95 10 8 71 1 0 9 1 0 52 2 1 19 1 0 93 chain 67821 chr2 242193529 + 126002357 126003306 MER11C 1089 + 0 1076 24489 55 0 91 79 0 5 29 0 3 102 0 5 202 31 32 104 0 1 70 0 19 33 2 1 6 0 2 38 0 1 16 4 5 21 1 0 123 1 2 10 6 5 16 chain 4244 chr2 242193529 + 126016172 126016223 L1P3 4156 + 3031 3082 89853 51 chain 21385 chr2 242193529 + 126064627 126064939 THE1B 368 + 0 309 54653 47 0 9 8 16 7 101 7 6 22 2 0 109 chain 4095 chr2 242193529 + 126071440 126071486 MLT2A2 560 + 514 560 90816 46 chain 4504 chr2 242193529 + 126075741 126075797 HERVL-int 5654 + 3906 3963 88301 12 0 1 44 chain 326905 chr2 242193529 + 126086455 126090226 L1PA5 6144 + 2367 6144 6267 142 0 1 1180 0 1 653 0 4 410 0 1 357 1 0 1028 chain 50728 chr2 242193529 + 126094605 126095196 L1PA7 6471 + 5863 6455 29302 294 1 2 296 chain 56906 chr2 242193529 + 126096162 126096891 HERVL-int 5654 + 58 782 27295 323 8 9 254 5 6 22 0 1 43 8 0 66 chain 91523 chr2 242193529 + 126102890 126103898 L1P1 4361 + 1918 2928 19412 204 0 2 804 chain 513384 chr2 242193529 + 126160490 126169496 L1PA7 6471 + 0 6459 2608 136 0 6 158 4 5 106 0 10 384 0 1 418 0 1 4 1 0 838 43 32 110 0 1 424 1 2 71 7 8 488 0 1 31 0 1 286 2 1 24 6 7 111 0 9 102 0 5 34 1 2 500 0 2 84 0 1 191 11 8 345 1 2 135 1 0 134 0 1 84 308 0 134 2 1 175 0 2 55 2321 0 29 3 6 629 0 50 74 chain 131952 chr2 242193529 + 126167270 126168737 L1PA3long 6157 + 4684 6152 13830 1139 0 1 328 chain 312423 chr2 242193529 + 126195619 126199204 L1P1 4361 + 1 3595 6566 608 0 4 1118 1 6 385 0 2 183 1 0 851 2 1 436 chain 49422 chr2 242193529 + 126218257 126218790 L1PA3long 6157 + 5623 6157 29794 421 0 1 112 chain 76954 chr2 242193529 + 126224999 126226042 L1PA8 5853 + 4808 5853 22329 152 4 5 42 0 2 289 12 13 107 17 19 127 2 1 43 2 0 53 0 3 15 1 0 8 10 9 44 2 1 19 1 0 93 chain 16371 chr2 242193529 + 126373928 126374471 LTR18B 584 + 0 556 60548 28 0 1 8 168 199 24 2 0 18 1 0 30 19 18 12 0 2 46 99 82 88 chain 23888 chr2 242193529 + 126389097 126389432 THE1D-int 1627 + 1282 1622 50964 12 0 3 52 5 14 67 9 2 18 2 1 4 0 1 166 chain 62372 chr2 242193529 + 126478617 126479823 Charlie3 2679 + 19 2603 25783 15 1 0 23 14 15 295 0 1 68 10 8 27 0 1747 274 368 0 111 chain 24567 chr2 242193529 + 126479347 126479712 THE1B 368 + 0 368 49909 169 1 0 21 7 10 14 6 10 8 1 0 8 1 0 66 7 6 56 chain 17714 chr2 242193529 + 126580256 126580490 L1PA10 4194 + 3920 4150 58994 110 1 0 86 3 0 34 chain 23224 chr2 242193529 + 126654529 126654808 AluSp 311 + 11 289 52044 258 2 1 19 chain 6376 chr2 242193529 + 126872459 126872554 MSTC 436 + 0 97 79755 44 0 1 31 8 9 12 chain 40723 chr2 242193529 + 126874972 126875505 LTR10A 586 + 0 563 34134 45 0 1 149 0 29 218 0 1 4 2 1 32 4 0 6 0 4 73 chain 24567 chr2 242193529 + 126941090 126941459 MER4A1_ 611 + 9 387 49910 44 19 20 28 19 24 163 2 5 94 chain 15427 chr2 242193529 + 126943564 126943916 LOR1b 457 + 43 440 61749 19 98 115 71 33 62 28 1 0 102 chain 65199 chr2 242193529 + 126956289 126957152 L1P3 4156 + 0 851 25133 226 5 6 19 1 0 66 4 3 78 17 5 239 6 7 202 chain 51518 chr2 242193529 + 126997215 126998144 PABL_A 660 + 0 649 29037 56 0 4 24 292 7 49 0 1 348 2 0 20 1 3 137 chain 18673 chr2 242193529 + 126997303 126997575 L1PA8 5853 + 5587 5853 57926 20 3 1 70 2 1 10 1 0 54 1 0 17 2 1 92 chain 2993 chr2 242193529 + 127001581 127001613 Tigger3b 1229 + 254 286 99935 32 chain 15219 chr2 242193529 + 127018074 127018271 L1PA8 5853 + 5661 5853 62017 21 1 0 11 2 0 47 2 1 19 1 0 93 chain 24583 chr2 242193529 + 127034152 127034614 MER1A 529 + 0 496 49882 22 95 121 21 5 11 20 7 6 134 0 1 122 6 8 30 chain 39025 chr2 242193529 + 127171246 127171705 LTR2 463 + 0 463 35337 232 9 12 123 0 1 95 chain 15387 chr2 242193529 + 127189388 127189619 L1PA8 5853 + 5626 5853 61803 52 2 1 14 13 12 35 2 1 15 5 4 93 chain 488243 chr2 242193529 + 127208178 127214774 L1PA8A 6298 + 36 6290 3463 4 1 0 18 32 21 21 3 0 19 18 10 18 2 1 9 3 2 10 2 1 7 1 0 12 2 0 13 9 6 13 1 0 8 1 0 6 11 9 12 6 2 6 1 0 45 1 0 21 6 0 72 0 1 4 2 0 14 2 1 9 6 4 240 0 1 400 1 2 24 0 4 20 4 1 14 3 0 39 5 6 55 0 1 783 4 9 314 0 1 143 13 9 384 1 2 14 7 1 16 1 14 237 333 0 203 1 0 36 0 25 434 4 6 44 0 1 4 1 0 65 0 1 837 6 5 18 1 4 475 12 17 145 2 1 78 0 2 15 13 0 91 0 4 498 0 2 28 0 3 79 chain 21578 chr2 242193529 + 127239791 127240171 THE1D 372 + 0 372 54393 25 2 0 30 9 0 13 17 18 78 39 43 18 1 0 10 1 0 137 chain 8255 chr2 242193529 + 127316880 127316975 U6 107 + 8 103 74270 95 chain 135643 chr2 242193529 + 127352676 127354252 SVA_D 2077 + 15 2072 13471 18 13 10 499 0 40 298 0 396 25 13 14 32 1 0 13 1 50 35 6 5 622 chain 216808 chr2 242193529 + 127372660 127375376 HERVK22-int 3844 + 0 2741 9124 307 13 16 196 0 1 196 8 12 831 0 2 673 0 3 116 1 4 230 71 80 74 chain 24236 chr2 242193529 + 127384330 127384666 Tigger1 2417 + 1466 1831 50443 41 15 10 222 6 40 52 chain 10741 chr2 242193529 + 127395910 127396072 L1MA4A 3247 + 2957 3116 68970 11 3 0 12 3 4 123 1 0 9 chain 6001 chr2 242193529 + 127452021 127452089 LTR55 556 + 155 223 81072 68 chain 5729 chr2 242193529 + 127472233 127472301 U4 144 + 0 68 82224 68 chain 3498 chr2 242193529 + 127538430 127538468 MER3 215 - 125 163 95257 38 chain 44668 chr2 242193529 + 127683422 127683924 LTR2C 499 + 0 499 31759 441 3 0 58 chain 21419 chr2 242193529 + 127794226 127794496 AluSq10 312 + 9 278 54614 196 11 10 63 chain 30250 chr2 242193529 + 127812657 127813076 LTR7B 505 + 0 495 41805 94 0 3 8 0 10 60 0 38 12 0 1 6 1 24 24 3 6 79 1 0 76 14 13 41 chain 20270 chr2 242193529 + 127830882 127831225 LTR18A 364 + 0 364 56055 202 20 33 14 12 16 13 0 1 6 1 7 24 9 12 24 6 0 12 chain 26434 chr2 242193529 + 127888499 127888807 AluSp 311 + 0 307 47075 91 0 3 155 4 0 58 chain 22560 chr2 242193529 + 127902019 127902273 L1PA5 6144 + 5889 6144 53025 43 0 1 211 chain 21422 chr2 242193529 + 127956468 127956713 L1PA5 6144 + 5898 6144 54608 103 0 1 142 chain 6872 chr2 242193529 + 127958050 127958127 L1PA8 5853 + 5776 5853 78062 77 chain 51276 chr2 242193529 + 127962322 127962888 L1PA4 6152 + 5585 6151 29138 566 chain 20884 chr2 242193529 + 127963587 127963862 THE1B 368 + 0 276 55272 15 2 0 25 0 5 130 2 0 101 chain 16401 chr2 242193529 + 128043801 128045155 HSMAR1 1287 + 7 798 60518 82 1123 559 72 0 1 77 chain 14206 chr2 242193529 + 128055223 128055387 HSMAR1 1287 + 1122 1286 63313 164 chain 8084 chr2 242193529 + 128067800 128067897 HY3 101 + 1 98 74670 97 chain 34643 chr2 242193529 + 128215926 128216490 LTR12F 595 + 4 588 38259 62 1 78 25 61 16 21 0 9 90 1 0 87 3 0 116 5 0 13 9 0 48 2 0 15 1 0 4 chain 12696 chr2 242193529 + 128225642 128226237 MSTB 430 + 7 196 65624 75 411 3 68 3 5 38 chain 2934 chr2 242193529 + 128225721 128225753 MSTB 430 + 85 117 100544 32 chain 8785 chr2 242193529 + 128333957 128334100 MER30 238 + 89 238 73027 19 4 15 28 4 2 37 3 0 48 chain 22635 chr2 242193529 + 128355105 128355474 MSTB 430 + 0 402 52933 62 5 6 81 2 17 32 13 23 72 31 38 71 chain 2961 chr2 242193529 + 128454658 128454833 MER77 626 + 380 540 100278 24 125 110 26 chain 9094 chr2 242193529 + 128455377 128455542 LTR18A 364 + 170 364 72359 15 29 66 53 1 0 47 7 0 13 chain 49526 chr2 242193529 + 128502162 128502748 LTR71B 605 + 0 605 29754 130 0 19 456 chain 5161 chr2 242193529 + 128517185 128517278 MLT1B 390 + 5 95 84856 14 2 0 5 1 0 5 1 0 17 4 5 44 chain 29863 chr2 242193529 + 128577923 128578242 AluYb8 318 + 0 318 42170 132 1 0 186 chain 72239 chr2 242193529 + 128614584 128615425 L1PA6 6164 + 5308 6149 23476 452 0 1 260 1 0 128 chain 42895 chr2 242193529 + 128680910 128681474 LTR10C 591 + 0 591 32839 77 5 6 47 4 15 204 0 1 144 0 1 15 0 1 4 0 1 7 4 15 53 chain 31316 chr2 242193529 + 128682822 128683264 LTR2 463 + 0 463 40879 130 0 4 28 8 29 19 5 0 140 0 2 5 2 0 5 12 13 88 chain 22521 chr2 242193529 + 128755126 128755386 AluY 311 + 41 299 53090 77 1 0 15 1 0 166 chain 532370 chr2 242193529 + 128823394 128830833 L1PA7 6471 + 3 6457 1737 406 1 2 37 0 1 1033 0 5 329 0 1 191 0 5 14 1014 2 133 0 1 359 1 3 852 0 1 106 7 2 771 1 2 53 0 1 329 0 2 395 2 6 231 2 1 215 1 2 83 0 2 34 5 8 77 0 2 183 0 1 430 2 1 142 chain 369234 chr2 242193529 + 128848982 128853285 L1P1 4361 + 4 4327 5673 132 1 15 841 2 1 766 0 1 172 0 4 258 0 2 980 0 1 754 2 3 216 1 0 155 1 0 22 chain 66456 chr2 242193529 + 128881742 128882515 L1PA5 6144 + 5376 6142 24839 686 11 9 55 1 0 9 4 0 7 chain 27512 chr2 242193529 + 128888310 128888753 MLT2A2 560 + 0 560 45565 169 53 58 64 0 98 17 0 11 39 0 5 41 9 5 6 0 2 45 chain 262859 chr2 242193529 + 128964615 128967505 L1PA3long 6157 + 3267 6157 7880 2890 chain 32663 chr2 242193529 + 129000000 129000652 L1PB1 5432 + 4893 5391 39793 210 124 0 11 1 0 24 1 0 9 1 0 4 0 1 5 6 2 9 2 0 40 1 0 5 0 1 6 2 1 16 1 0 44 30 16 30 2 0 5 1 0 14 2 0 27 1 0 18 chain 21928 chr2 242193529 + 129011139 129011401 AluSp 311 + 12 274 53929 262 chain 29785 chr2 242193529 + 129204712 129205106 L1PA8 5853 + 5460 5853 42253 23 0 1 80 1 0 45 2 0 53 0 5 15 1 0 5 10 9 48 1 0 16 1 0 93 chain 11366 chr2 242193529 + 129217996 129218117 L1PA7 6471 + 6158 6279 67975 121 chain 14090 chr2 242193529 + 129218117 129218305 L1PA7 6471 + 6280 6457 63470 40 15 3 68 0 1 65 chain 39691 chr2 242193529 + 129232203 129232674 L1PA7 6471 + 5737 6211 34897 398 0 3 73 chain 21601 chr2 242193529 + 129232678 129232936 L1PA7 6471 + 6212 6470 54352 258 chain 39441 chr2 242193529 + 129287419 129287999 L1P3 4156 + 3104 3651 35050 375 0 13 8 36 5 29 18 0 41 0 3 73 chain 40678 chr2 242193529 + 129294062 129294527 L1P1 4361 + 2202 2669 34162 110 1 2 265 0 1 89 chain 32649 chr2 242193529 + 129294527 129294894 L1PA5 6144 + 5746 6113 38655 367 chain 33025 chr2 242193529 + 129329362 129329871 LTR12F 595 + 0 595 39499 91 50 144 254 9 10 32 12 3 61 chain 94842 chr2 242193529 + 129358871 129360025 L1PA7 6471 + 5308 6470 18927 18 5 7 95 1 0 190 0 7 19 16 10 306 0 6 504 chain 134332 chr2 242193529 + 129394140 129395814 L1PA8 5853 + 4166 5834 13614 24 1 3 63 0 1 83 1 0 667 0 2 74 6 4 282 7 0 152 0 3 15 0 1 22 1 0 46 2 0 72 1 0 7 2 1 56 1 0 16 15 15 24 0 1 34 chain 28918 chr2 242193529 + 129415379 129415687 AluYa5 310 + 0 307 43456 132 1 0 175 chain 41887 chr2 242193529 + 129447050 129447544 L1PA5 6144 + 5650 6144 33433 180 0 1 201 1 0 112 chain 26270 chr2 242193529 + 129511415 129511715 AluYk4 311 + 2 297 47318 284 5 0 11 chain 20771 chr2 242193529 + 129525021 129525302 L1PREC2 3366 + 858 1134 55407 94 9 0 161 1 5 16 chain 505630 chr2 242193529 + 129531920 129537966 L1PA5 6144 + 0 6144 2944 124 0 14 15 3 15 96 16 17 178 4 0 710 9 0 60 1 0 418 0 3 5 3 0 33 0 2 94 0 16 69 0 1 124 16 10 54 0 1 210 13 89 136 0 1 681 1 0 333 1 0 46 0 1 115 7 5 95 0 1 1522 1 0 77 7 6 356 0 1 405 3 0 5 chain 35448 chr2 242193529 + 129540779 129541206 L1PA5 6144 + 5716 6140 37753 265 6 1 6 0 1 17 0 1 133 chain 466095 chr2 242193529 + 129569283 129574947 L1PA7 6471 + 749 6464 3961 85 0 1 108 0 1 580 16 6 15 0 8 380 3 0 283 4 1 5 0 3 40 1 0 39 0 7 208 0 2 119 0 1 40 13 15 283 1 0 61 7 8 10 0 1 41 0 4 896 1 0 185 0 20 401 0 2 65 4 16 139 0 2 125 1 0 30 1 0 470 0 1 217 14 16 11 1 4 81 4 3 676 chain 14970 chr2 242193529 + 129614174 129614390 MER30 238 + 0 238 62299 71 0 1 35 4 0 8 13 38 85 chain 5689 chr2 242193529 + 129637583 129637653 LOR1b 457 + 220 290 82392 70 chain 28859 chr2 242193529 + 129690432 129690801 THE1C 375 + 7 375 43535 343 1 0 25 chain 68072 chr2 242193529 + 129695538 129696391 THE1C-int 1605 + 737 1591 24438 7 0 1 419 7 6 399 0 1 21 chain 90095 chr2 242193529 + 129701349 129702385 LTR5A 1029 + 0 1029 19664 150 1 0 725 6 0 154 chain 20628 chr2 242193529 + 129745912 129746249 THE1D 372 + 0 372 55598 95 2 5 5 3 0 18 0 20 23 0 4 8 14 16 44 0 8 29 14 16 49 1 0 32 chain 24263 chr2 242193529 + 129760367 129760627 AluYa5 310 + 39 299 50400 260 chain 27247 chr2 242193529 + 129761092 129761383 AluYb8 318 + 0 288 45899 118 3 0 170 chain 10033 chr2 242193529 + 129822482 129822612 MER85 139 + 0 139 70348 11 1 0 79 0 10 39 chain 112679 chr2 242193529 + 129833042 129834328 SVA_B 1603 + 40 1603 16726 5 0 3 396 0 39 176 0 238 8 0 1 57 4 0 640 chain 25180 chr2 242193529 + 129835567 129835880 L1MA2 4263 + 2964 3277 48988 56 0 1 31 4 3 222 chain 3275 chr2 242193529 + 129837355 129837391 L1MA6 2487 + 1878 1914 97223 36 chain 24031 chr2 242193529 + 129898935 129899230 AluSq10 312 + 8 305 50754 71 5 7 219 chain 100437 chr2 242193529 + 129899495 129901011 L1MA4 2864 + 1148 2660 18243 192 20 6 59 18 10 155 5 4 217 0 20 182 0 1 4 20 28 23 1 0 24 6 3 25 16 13 4 1 0 61 1 0 11 1 0 11 0 2 31 8 6 5 0 1 88 3 0 36 0 13 114 3 2 144 15 5 12 chain 22027 chr2 242193529 + 129955307 129955560 AluYc 301 + 46 301 53796 74 0 2 179 chain 60431 chr2 242193529 + 129989108 129989813 L1PA6 6164 + 5457 6162 26255 705 chain 50779 chr2 242193529 + 129992259 129994643 L1PA6 6164 + 5535 6162 29287 247 1758 0 221 10 11 148 chain 278226 chr2 242193529 + 129998477 130001786 L1P1 4361 + 1 3281 7484 299 14 15 255 1 0 260 34 0 205 0 2 406 4 6 1474 0 1 357 chain 56432 chr2 242193529 + 130021563 130022313 L1PA8A 6298 + 5504 6290 27445 35 0 3 6 3 8 113 2 0 193 0 25 30 0 1 88 2 1 104 6 9 65 0 2 103 chain 9538 chr2 242193529 + 130046553 130046669 L1PA7 6471 + 6350 6466 71395 116 chain 2783 chr2 242193529 + 130121649 130121700 L1PB1 5432 + 5346 5395 101749 23 3 2 20 1 0 4 chain 59647 chr2 242193529 + 130215519 130216259 L1PA7 6471 + 5740 6465 26474 220 19 7 340 1 2 149 4 0 7 chain 21082 chr2 242193529 + 130295197 130295482 L1PB1 5432 + 4558 4852 55026 60 3 0 62 0 3 114 3 11 4 0 1 39 chain 5884 chr2 242193529 + 130328099 130328168 LTR12D 1347 + 587 656 81542 69 chain 24466 chr2 242193529 + 130343471 130343759 AluSg 306 + 8 301 50085 71 0 5 217 chain 57213 chr2 242193529 + 130412279 130413031 L1PA8A 6298 + 5504 6289 27189 43 1 9 111 2 0 195 0 25 30 0 1 88 2 1 88 15 18 70 4 3 103 chain 9697 chr2 242193529 + 130437356 130437476 L1PA7 6471 + 6350 6470 71053 120 chain 27681 chr2 242193529 + 130534305 130534604 AluYg6 310 + 0 295 45349 126 4 0 169 chain 5378 chr2 242193529 + 130535358 130535424 MLT1A0 366 + 300 366 83812 66 chain 3379 chr2 242193529 + 130536006 130536047 MLT2D 439 + 380 426 96311 8 0 5 33 chain 3505 chr2 242193529 + 130602657 130602699 MLT1B 390 + 277 319 95198 42 chain 5084 chr2 242193529 + 130671778 130671985 MSTA 426 + 156 370 85227 26 129 136 52 chain 5862 chr2 242193529 + 130721602 130721673 Tigger1 2417 + 942 1013 81641 71 chain 20621 chr2 242193529 + 130732398 130732684 AluSp 311 + 10 292 55605 9 2 1 36 4 3 75 11 9 149 chain 14163 chr2 242193529 + 130733900 130734056 SVA_E 1901 + 1745 1901 63364 156 chain 9815 chr2 242193529 + 130742156 130742290 MER57-int 2662 + 233 362 70794 82 3 0 14 2 0 33 chain 20699 chr2 242193529 + 130744111 130744387 MER57-int 2662 + 110 386 55500 71 3 8 125 3 0 15 3 1 56 chain 14686 chr2 242193529 + 130804092 130804730 L1MB2 1706 + 614 917 62689 104 24 20 21 361 40 62 7 3 29 14 8 16 chain 13436 chr2 242193529 + 130910044 130910215 L1PA7 6471 + 6297 6470 64406 22 1 3 148 chain 27406 chr2 242193529 + 130940558 130940860 AluYc3 301 + 0 300 45694 121 2 0 179 chain 192712 chr2 242193529 + 130952339 130954556 L1PA6 6164 + 3929 6162 9985 435 0 8 307 2 1 337 0 1 300 5 9 685 0 4 146 chain 72241 chr2 242193529 + 130956154 130956962 L1PA3long 6157 + 5331 6147 23475 582 0 2 142 1 7 83 chain 4704 chr2 242193529 + 130960176 130960231 Tigger3c 601 - 369 425 87245 38 0 1 17 chain 119846 chr2 242193529 + 130991264 130992700 LTR12C 1709 + 0 1709 15561 240 0 2 194 0 1 213 0 278 184 1 0 5 3 1 106 0 4 332 9 0 149 chain 19126 chr2 242193529 + 131083132 131083355 AluSc5 308 + 59 282 57424 223 chain 13306 chr2 242193529 + 131112969 131113482 MER21B 843 + 614 830 64609 7 0 1 81 317 26 13 4 0 67 3 0 21 chain 13596 chr2 242193529 + 131182081 131182236 L1PA4 6152 + 5996 6151 64171 155 chain 252211 chr2 242193529 + 131184415 131187237 L1PA4 6152 + 3322 6152 8176 277 0 9 1686 1 0 523 0 1 80 1 0 254 chain 10425 chr2 242193529 + 131212235 131212373 MER85 139 + 0 139 69565 75 3 4 60 chain 17627 chr2 242193529 + 131258858 131259119 THE1D 372 + 78 338 59094 88 28 28 61 1 0 83 chain 42710 chr2 242193529 + 131290883 131291408 L1PA7 6471 + 5824 6346 32942 107 0 1 302 0 2 40 0 2 46 8 0 22 chain 41848 chr2 242193529 + 131340947 131341467 L1PA7 6471 + 5815 6340 33458 158 0 1 225 0 4 137 chain 32208 chr2 242193529 + 131353876 131354237 L1PA6 6164 + 5120 5481 40180 361 chain 507261 chr2 242193529 + 131373811 131379441 L1PA3long 6157 + 0 6157 2878 94 0 526 825 0 1 1244 0 1 927 0 3 1423 7 2 835 0 1 275 chain 6134 chr2 242193529 + 131385559 131385631 tRNA-Gln-CAA_ 72 + 0 72 80595 72 chain 11728 chr2 242193529 + 131466410 131466628 MSTA 426 + 165 388 67354 71 2 0 19 5 11 7 1 0 25 10 29 34 26 9 18 chain 3786 chr2 242193529 + 131550887 131551077 L1MB8 1703 + 1518 1625 92946 6 1 0 40 125 43 18 chain 3515 chr2 242193529 + 131653544 131653583 HY3 101 + 61 100 95134 39 chain 87140 chr2 242193529 + 131680835 131681822 L1P1 4361 + 2508 3493 20206 669 1 0 206 1 0 110 chain 229226 chr2 242193529 + 131693367 131695869 L1PA3long 6157 + 3638 6147 8769 718 0 1 349 0 7 986 1 0 448 chain 83357 chr2 242193529 + 131721199 131722222 LTR5A 1029 + 0 1029 20953 74 0 6 70 1 0 621 2 1 47 1 2 163 11 12 33 chain 5470 chr2 242193529 + 131777486 131777584 L1MA3 4352 + 4240 4332 83349 14 6 4 24 1 0 6 1 0 29 1 0 11 1 0 4 chain 42069 chr2 242193529 + 131785899 131786391 LTR15 485 + 0 485 33313 343 8 0 118 0 2 18 1 0 4 chain 103738 chr2 242193529 + 131815264 131816385 L1HS 6032 + 707 1828 17843 1121 chain 3863 chr2 242193529 + 131840510 131840553 Tigger3c 601 + 321 364 92390 43 chain 6602 chr2 242193529 + 131869879 131869991 HERVL-int 5654 + 0 113 78968 55 24 25 33 chain 10494 chr2 242193529 + 131870001 131870121 HSMAR1 1287 + 1167 1287 69427 120 chain 28639 chr2 242193529 + 131883836 131884256 L1PA8 5853 + 5435 5850 43886 42 0 1 64 1 0 4 5 6 12 1 0 17 0 1 27 5 3 66 20 18 44 2 1 19 1 0 90 chain 18429 chr2 242193529 + 131888078 131888327 L1PA10 4194 + 3917 4161 58195 165 2 1 33 3 0 34 1 0 11 chain 6708 chr2 242193529 + 131907556 131907652 L1MB3 1562 + 1281 1376 78616 70 5 4 21 chain 263209 chr2 242193529 + 131926847 131930461 L1PB1 5432 + 1738 5391 7874 37 1 3 59 5 0 900 0 1 81 1 0 6 0 1 277 6 9 51 0 16 36 1 0 353 7 12 147 10 5 4 0 1 21 0 1 214 0 1 20 4 5 45 4 5 295 1 0 4 0 1 265 8 9 423 0 1 5 1 0 11 0 5 35 1 2 8 1 0 25 26 20 11 2 0 12 2 0 39 2 41 20 1 0 15 3 0 15 9 0 11 31 28 20 1 0 21 chain 6893 chr2 242193529 + 131966767 131966886 LTR12D 1347 + 503 772 77974 29 8 76 16 0 82 8 0 1 20 1 0 37 chain 19269 chr2 242193529 + 132052964 132053261 THE1B 368 + 6 327 57269 38 0 15 110 1 0 29 35 45 84 chain 83798 chr2 242193529 + 132118790 132119823 MER11C 1089 + 0 1051 20849 246 0 9 61 1 5 63 2 1 169 0 1 137 0 4 41 0 1 313 chain 71098 chr2 242193529 + 132129008 132130274 L1P3 4156 + 3123 4107 23743 277 0 4 112 16 32 18 5 7 5 0 1 30 306 0 116 0 1 381 chain 184203 chr2 242193529 + 132199840 132201887 L1PA3long 6157 + 3672 5742 10375 226 0 19 1393 0 4 428 chain 81953 chr2 242193529 + 132220384 132221314 SVA_D 2077 + 55 1335 21255 498 0 2 136 0 40 147 0 310 32 2 0 115 chain 2980 chr2 242193529 + 132221332 132221385 SVA_E 1901 + 923 976 35569 53 chain 4016 chr2 242193529 + 132221385 132221455 SVA_E 1901 + 806 874 30612 6 1 0 5 1 0 57 chain 102134 chr2 242193529 + 132221455 132222851 SVA_E 1901 + 669 1901 18047 15 0 37 12 0 3 29 8 7 18 120 14 8 1 0 5 1 0 106 53 0 172 1 0 12 41 0 794 chain 1631 chr2 242193529 + 132221537 132221566 SVA_E 1901 + 1127 1156 35569 29 chain 2926 chr2 242193529 + 132221606 132221657 SVA_E 1901 + 923 974 30612 51 chain 2983 chr2 242193529 + 132221779 132221831 SVA_E 1901 + 1095 1147 30612 52 chain 526945 chr2 242193529 + 132231327 132237282 L1PA3long 6157 + 0 6154 1960 153 0 1 100 1 2 324 0 4 193 1 129 2608 0 1 372 1 0 1268 0 65 934 chain 10966 chr2 242193529 + 132305496 132305656 AluY 311 + 5 168 68601 38 1 14 66 14 4 41 chain 24399 chr2 242193529 + 132357971 132358236 AluY 311 + 36 303 50168 78 0 1 11 0 1 176 chain 169260 chr2 242193529 + 132364061 132366506 L1PA8 5853 + 987 5853 11140 30 1 0 254 29 8 182 6 9 436 0 2 118 14 12 229 12 16 188 1 3 162 148 2586 342 1 0 45 2 0 61 35 36 28 8 7 19 1 0 93 chain 14025 chr2 242193529 + 132380558 132380759 MER44B 551 + 292 512 63554 146 7 22 12 2 0 9 0 6 25 chain 30997 chr2 242193529 + 132401963 132402342 L1PA8A 6298 + 5912 6289 41129 273 2 0 104 chain 3161 chr2 242193529 + 132438658 132438694 MER58B 340 + 289 325 98275 36 chain 542065 chr2 242193529 + 132528881 132535001 L1PA4 6152 + 0 6152 1200 180 0 11 137 0 3 901 6 4 451 0 2 1005 0 5 514 0 1 33 0 4 152 0 1 105 1 0 772 0 1 591 0 4 427 0 4 839 1 0 5 chain 31066 chr2 242193529 + 132590858 132591641 MLT2A2 560 + 84 560 41078 85 373 48 124 0 7 51 3 14 147 chain 21970 chr2 242193529 + 132600449 132600778 L1MA5 2750 + 25 367 53877 17 4 8 23 13 25 179 1 0 50 2 0 40 chain 21548 chr2 242193529 + 132732183 132732442 L1PA6 6164 + 5896 6162 54438 115 0 7 144 chain 18518 chr2 242193529 + 132735233 132735606 MSTB 430 + 30 430 58083 58 32 33 18 4 17 45 5 12 19 36 37 24 1 0 7 6 11 60 0 1 58 chain 14637 chr2 242193529 + 132772013 132772197 Tigger3b 1229 + 971 1155 62754 184 chain 6640 chr2 242193529 + 132931190 132931274 MER57A1 433 + 0 84 78843 84 chain 18634 chr2 242193529 + 133071260 133071474 AluYa5 310 + 97 302 57960 197 9 0 8 chain 2677 chr2 242193529 + 133092502 133092555 MER6B 211 - 0 54 102460 11 11 12 31 chain 4241 chr2 242193529 + 133119472 133119537 L1MA4 2864 + 2746 2809 89869 17 1 0 5 2 1 40 chain 23398 chr2 242193529 + 133132021 133132303 AluSg7 307 + 14 297 51761 117 0 1 165 chain 14872 chr2 242193529 + 133145286 133145506 L1PA8 5853 + 5637 5853 62421 45 1 0 9 15 14 35 2 1 19 1 0 93 chain 5339 chr2 242193529 + 133173434 133173560 MER31B 477 + 104 245 84010 31 52 67 43 chain 321904 chr2 242193529 + 133188196 133191925 L1PA5 6144 + 2393 6140 6370 146 1 0 796 0 1 612 0 11 672 0 5 276 2 1 381 2 0 31 12 13 311 1 4 63 0 2 270 1 0 152 chain 149243 chr2 242193529 + 133201844 133203552 L1PA5 6144 + 4441 6144 12405 448 1 0 405 2 0 841 2 0 9 chain 4101 chr2 242193529 + 133271231 133271319 MER51A 677 + 586 677 90768 28 28 31 32 chain 270882 chr2 242193529 + 133299870 133302778 L1HS 6032 + 3103 6016 7689 25 1 6 2882 chain 13503 chr2 242193529 + 133374006 133374237 L1MC1 2226 + 1724 1948 64312 108 21 22 13 1 0 20 13 7 24 1 0 30 chain 541680 chr2 242193529 + 133546865 133552758 L1PA2 6032 + 1 6032 1224 2421 0 135 5 1 0 487 1 0 1185 0 4 187 0 1 1606 chain 20002 chr2 242193529 + 133596090 133596329 7SK 245 + 0 239 56382 239 chain 3874 chr2 242193529 + 133597262 133597343 MER5A 189 + 83 165 92324 32 24 25 25 chain 455146 chr2 242193529 + 133614287 133619313 L1PA3long 6157 + 1130 6156 4254 1196 2 1 3806 0 1 22 chain 55591 chr2 242193529 + 133628002 133628706 L1PA10 4194 + 3445 4150 27690 570 0 5 77 11 10 9 3 0 34 chain 4514 chr2 242193529 + 133662595 133662678 MADE1 96 - 0 96 88240 30 23 36 30 chain 39617 chr2 242193529 + 133747374 133747892 L1PA7 6471 + 5263 5755 34947 234 26 3 14 7 0 107 1 4 9 0 1 120 chain 79903 chr2 242193529 + 133764365 133765295 L1PA7 6471 + 5536 6469 21642 85 0 3 86 1 0 153 0 1 605 chain 52017 chr2 242193529 + 133785549 133786234 L1PA8 5853 + 5162 5847 28871 402 6 5 39 2 0 70 2 1 11 4 0 4 1 0 46 2 1 19 3 2 43 0 11 31 chain 48578 chr2 242193529 + 133809910 133810443 L1PA4 6152 + 5613 6146 30091 533 chain 76608 chr2 242193529 + 133852435 133853402 THE1B-int 1605 + 0 996 22412 107 0 3 320 0 25 276 4 5 260 chain 7752 chr2 242193529 + 133853411 133853499 THE1B 368 + 268 356 75485 88 chain 58524 chr2 242193529 + 133881951 133882682 L1PA7 6471 + 5741 6468 26808 53 1 0 4 0 1 126 8 2 240 0 4 127 1 2 158 3 0 10 chain 33658 chr2 242193529 + 133893938 133894376 LTR2 463 + 1 440 38958 380 16 18 12 1 0 29 chain 166668 chr2 242193529 + 133896017 133898034 Harlequin-int 5206 + 150 2172 11295 138 1 0 6 6 0 12 1 0 76 4 0 103 1 0 101 0 7 89 1 0 120 7 10 53 0 2 111 0 4 581 3 2 141 0 5 449 1 0 12 chain 32315 chr2 242193529 + 133898131 133898579 LTR2 463 + 0 447 40106 96 0 4 121 5 0 151 25 26 13 1 0 36 chain 556186 chr2 242193529 + 133910488 133916499 L1PA2 6032 + 8 6027 349 3587 0 1 405 0 3 1178 0 4 841 chain 20330 chr2 242193529 + 134018489 134018758 AluSp 311 + 12 273 55971 113 13 5 143 chain 541786 chr2 242193529 + 134042779 134048901 L1PA4 6152 + 25 6151 1220 1696 0 1 234 0 1 186 0 1 653 0 1 1484 1 0 1763 0 1 105 chain 419123 chr2 242193529 + 134060267 134066847 L1PA4 6152 + 0 4924 4891 366 7 6 446 0 17 7 18 1 336 1 0 154 3 1 1463 0 1 272 1647 0 101 1 0 514 0 4 501 8 0 272 1 0 462 chain 133480 chr2 242193529 + 134063420 134064977 SVA_D 2077 + 42 2075 13694 89 0 1 432 0 40 157 0 40 115 1 138 66 4 209 23 0 49 53 1 2 213 2 0 365 0 5 36 chain 87338 chr2 242193529 + 134066847 134067813 L1PA4 6152 + 5177 6143 20167 966 chain 16657 chr2 242193529 + 134077111 134077327 L1PA16 3655 + 3379 3592 60205 36 0 1 162 3 0 8 1 0 6 chain 34579 chr2 242193529 + 134105226 134105696 L1PA8 5853 + 5388 5853 38299 55 0 1 120 1 0 44 2 0 17 9 10 43 20 18 46 1 0 18 1 0 93 chain 4611 chr2 242193529 + 134191260 134191354 MSTD 398 + 4 102 87742 40 0 3 5 26 27 23 chain 9349 chr2 242193529 + 134196657 134196847 MER30 238 + 0 229 71819 12 17 24 54 7 39 68 16 16 16 chain 3054 chr2 242193529 + 134225284 134225346 MER5A1 166 + 37 110 99265 33 14 25 15 chain 48503 chr2 242193529 + 134294557 134295138 LTR10C 591 + 10 591 30118 181 12 10 307 0 2 81 chain 156950 chr2 242193529 + 134331839 134333594 L1PA3long 6157 + 4419 6157 11942 133 22 0 758 0 4 378 0 1 464 chain 3890 chr2 242193529 + 134347630 134347690 MER2 342 + 174 237 92213 36 5 8 19 chain 2879 chr2 242193529 + 134423771 134423804 MIRb 242 + 159 192 101006 33 chain 5858 chr2 242193529 + 134425126 134425257 L1MEf 1413 + 771 896 81661 34 2 0 31 40 36 24 chain 42043 chr2 242193529 + 134488134 134488726 MLT2A2 560 + 0 560 33333 98 69 0 29 0 26 253 0 11 143 chain 13615 chr2 242193529 + 134500578 134501033 L1MA5A 2387 + 2003 2380 64146 5 3 0 24 2 1 38 4 0 37 1 0 29 123 101 55 87 42 5 1 0 35 1 0 5 chain 49346 chr2 242193529 + 134589244 134589867 MER41B 635 + 6 635 29820 119 1 2 384 0 1 35 1 6 19 1 0 63 chain 41024 chr2 242193529 + 134590787 134591329 MER61E 571 + 0 571 33955 75 3 0 7 0 13 397 20 39 40 chain 6939 chr2 242193529 + 134600557 134600645 MSTC 436 + 19 107 77813 88 chain 7585 chr2 242193529 + 134657432 134657520 L1PA16 3655 + 3483 3571 75899 88 chain 17162 chr2 242193529 + 134759665 134760026 L1MA4 2864 + 2484 2805 59618 13 3 2 17 1 0 101 1 0 51 8 5 19 84 48 22 4 5 5 0 1 32 chain 21057 chr2 242193529 + 134764077 134764385 MER49 923 + 180 490 55052 69 1 0 35 7 14 37 2 0 66 4 2 87 chain 52276 chr2 242193529 + 134768461 134769093 L1PA6 6164 + 5532 6162 28794 471 7 0 9 0 6 100 0 1 37 2 0 6 chain 3073 chr2 242193529 + 134790540 134790588 MER5B 177 - 124 173 99052 14 4 5 30 chain 31437 chr2 242193529 + 134812730 134813132 L1PA7 6471 + 6057 6466 40782 190 4 9 200 0 2 8 chain 43901 chr2 242193529 + 134820505 134821002 L1P1 4361 + 2924 3426 32191 19 0 5 478 chain 550446 chr2 242193529 + 134825451 134831458 L1PA2 6032 + 6 6032 711 1277 0 9 1286 1 0 471 1 0 1177 0 4 242 0 1 1333 0 7 219 chain 11699 chr2 242193529 + 134832426 134832696 Tigger3a 397 + 0 302 67399 25 94 114 9 0 10 96 5 7 41 chain 41778 chr2 242193529 + 134891442 134892036 L1PB4 2604 + 1943 2544 33505 140 28 34 92 12 13 85 0 1 75 2 0 28 0 1 132 chain 22690 chr2 242193529 + 134991048 134991302 AluY 311 + 29 284 52837 103 0 1 151 chain 22659 chr2 242193529 + 135032113 135032385 AluSg4 309 + 37 309 52886 272 chain 8165 chr2 242193529 + 135034994 135035090 L1MB8 1703 + 1449 1545 74494 96 chain 3424 chr2 242193529 + 135065363 135065440 Charlie1a 1436 + 1057 1135 95877 30 26 27 21 chain 27627 chr2 242193529 + 135079847 135080138 AluYd8 298 + 0 291 45424 291 chain 40534 chr2 242193529 + 135089566 135090088 L1PA7 6471 + 5941 6461 34281 255 4 3 98 22 21 143 chain 132485 chr2 242193529 + 135105202 135106773 SVA_C 1631 + 26 1628 13783 11 28 6 804 24 71 6 0 1 14 0 4 43 0 4 12 1 2 319 0 1 14 0 2 270 7 0 18 chain 22335 chr2 242193529 + 135188834 135189070 L1PA2 6032 + 5785 6021 53354 236 chain 542218 chr2 242193529 + 135231810 135237934 L1PA4 6152 + 0 6140 1195 5 1 0 49 6 12 414 5 6 61 4 0 552 0 1 1594 0 5 179 0 1 386 0 2 1742 2 1 1118 0 6 6 chain 22656 chr2 242193529 + 135249530 135249887 THE1A 353 + 0 353 52892 110 32 31 77 30 27 108 chain 128780 chr2 242193529 + 135249887 135251451 THE1A-int 1579 + 0 1579 14181 281 0 2 210 7 13 407 0 2 134 2 1 311 0 6 212 chain 4121 chr2 242193529 + 135252063 135252110 THE1A 353 + 289 336 90648 47 chain 14756 chr2 242193529 + 135266211 135266470 MER4D1 891 + 165 454 62594 72 0 28 21 28 41 8 8 0 60 1 0 4 1 2 12 1 0 16 1 0 9 1 0 16 chain 27218 chr2 242193529 + 135377746 135378186 MLT2A1 477 + 0 473 45943 167 6 3 9 0 1 23 0 1 73 1 0 15 46 47 46 4 0 6 5 43 39 chain 112845 chr2 242193529 + 135379531 135380862 L1P2 5180 + 1863 3192 16695 464 1 0 225 1 0 640 chain 490435 chr2 242193529 + 135380873 135386996 L1PA6 6164 + 0 6162 3410 134 75 63 299 15 14 80 0 4 70 0 1 181 0 1 4 2 3 74 0 25 222 4 13 534 0 3 473 4 0 61 0 1 75 6 5 555 0 3 298 0 1 460 0 1 618 0 3 373 0 5 48 10 9 95 15 14 204 3 0 273 0 1 707 0 1 142 0 2 9 chain 82490 chr2 242193529 + 135395756 135396942 L1MA3 4352 + 3163 4347 21125 47 1 3 163 6 5 21 4 3 147 0 11 116 1 0 414 39 13 6 0 7 59 2 1 74 16 30 5 1 0 29 1 0 11 6 2 17 chain 160480 chr2 242193529 + 135402975 135404852 L1P1 4361 + 2 1880 11720 551 0 1 683 0 1 498 2 1 143 chain 364071 chr2 242193529 + 135404852 135408973 L1PA4 6152 + 2019 6140 5752 1164 1 0 415 0 1 466 1 2 5 1 0 937 4 3 1098 0 1 29 chain 390110 chr2 242193529 + 135413765 135418120 L1PA3long 6157 + 1801 6157 5320 213 0 3 1153 3 1 1844 2 1 835 0 1 305 chain 71643 chr2 242193529 + 135425559 135426546 L1PA15 4387 + 1391 2375 23625 63 4 0 243 7 3 56 0 5 123 10 17 51 1 0 264 19 12 81 0 1 65 chain 86247 chr2 242193529 + 135441986 135443329 L1PA6 6164 + 4945 5960 20369 837 328 0 178 chain 15132 chr2 242193529 + 135443359 135443529 L1PA6 6164 + 5981 6151 62121 170 chain 75906 chr2 242193529 + 135498231 135499231 MER11C 1089 + 0 1052 22607 205 0 7 8 0 5 39 11 14 41 1 18 73 1 0 4 14 15 8 0 9 125 28 28 176 2 10 40 0 3 224 chain 48827 chr2 242193529 + 135521883 135522470 LTR14C 587 + 0 587 30002 22 0 1 299 1 0 265 chain 60239 chr2 242193529 + 135526463 135527196 MER4E 760 + 14 752 26313 355 0 2 63 1 0 291 0 2 9 0 2 14 chain 11899 chr2 242193529 + 135774859 135775108 L1MB7 1623 + 932 1187 67009 7 1 0 46 71 77 93 8 9 23 chain 7149 chr2 242193529 + 135805710 135805894 Tigger3b 1229 + 28 215 77105 75 6 7 14 68 70 21 chain 9474 chr2 242193529 + 135830538 135830661 MER85 139 + 6 139 71549 84 0 10 39 chain 22290 chr2 242193529 + 135875097 135875376 AluSp 311 + 9 294 53421 21 0 5 89 0 1 169 chain 360252 chr2 242193529 + 135938595 135942655 L1PA5 6144 + 2061 6135 5798 37 0 3 398 0 2 617 0 1 39 0 1 516 1 0 1108 0 2 506 0 4 131 0 2 707 chain 3020 chr2 242193529 + 135981489 135981521 Tigger4a 237 - 201 233 99653 32 chain 26560 chr2 242193529 + 136007405 136007738 L1PA8 5853 + 5525 5853 46890 39 1 0 44 2 0 71 1 0 61 2 1 19 1 0 29 0 1 63 chain 16679 chr2 242193529 + 136158137 136158684 L1MA2 4263 + 3635 3872 60174 27 1 0 70 309 0 65 12 9 13 0 3 50 chain 22415 chr2 242193529 + 136185170 136185471 L1PA16 3655 + 3290 3589 53250 213 2 3 71 3 0 12 chain 36328 chr2 242193529 + 136191121 136191644 MER1A 529 + 0 529 37189 17 18 25 348 0 3 5 3 0 38 2 0 6 1 0 5 23 25 57 chain 65558 chr2 242193529 + 136228986 136229984 L1PB1 5432 + 4418 5393 25062 115 3 4 8 1 2 81 4 0 77 0 2 97 3 2 87 1 2 166 1 2 40 1 2 9 3 0 24 1 0 8 1 0 10 18 12 52 2 1 16 6 10 34 1 0 15 26 16 14 3 1 5 1 0 14 2 0 24 1 0 23 chain 4440 chr2 242193529 + 136244632 136244688 MIRc 230 + 49 105 88653 56 chain 24675 chr2 242193529 + 136315279 136315569 AluSp 311 + 8 298 49766 290 chain 25920 chr2 242193529 + 136324172 136324599 MER51B 395 + 5 395 47834 27 26 13 182 58 27 43 0 2 22 0 1 4 0 4 65 chain 14861 chr2 242193529 + 136340661 136340853 Tigger1 2417 + 2227 2417 62445 25 2 0 165 chain 19906 chr2 242193529 + 136350375 136350741 THE1B 368 + 0 368 56524 14 2 0 33 0 1 60 9 10 49 75 78 48 1 0 75 chain 492801 chr2 242193529 + 136468984 136474819 L1PA6 6164 + 287 6162 3349 51 3 0 122 6 5 217 0 1 823 8 9 501 0 1 315 1 2 135 1 2 115 0 1 114 0 3 302 0 1 189 3 4 210 4 5 235 0 1 43 0 14 260 0 1 331 0 2 31 1 0 340 1 0 351 0 7 284 0 5 87 0 3 645 0 1 106 chain 32455 chr2 242193529 + 136484917 136485377 L1PA8 5853 + 5399 5853 39984 121 0 1 43 1 0 46 2 0 69 1 0 10 1 0 38 15 14 19 2 1 92 chain 6540 chr2 242193529 + 136572916 136573094 MLT1C 463 + 2 175 79191 19 46 46 30 10 11 13 10 4 50 chain 529951 chr2 242193529 + 136596072 136602170 L1PA5 6144 + 0 6140 1825 120 0 14 817 1 0 217 0 1 1006 0 2 132 1 5 351 0 3 930 5 23 53 2 1 953 1 0 383 4 3 257 0 4 865 chain 13308 chr2 242193529 + 136610318 136610473 L1PA8A 6298 + 6135 6290 64603 155 chain 5094 chr2 242193529 + 136631992 136632129 MER3 215 + 20 144 85183 33 28 25 38 25 15 13 chain 15058 chr2 242193529 + 136653509 136653770 L1PA8 5853 + 5586 5836 62194 23 2 0 59 53 36 36 2 1 77 0 9 9 chain 26146 chr2 242193529 + 136672086 136672450 THE1B 368 + 0 368 47503 49 0 9 6 13 9 6 4 0 89 1 0 30 0 4 166 chain 88377 chr2 242193529 + 136679916 136681085 L1PA10 4194 + 2978 4150 19970 157 1 0 202 11 12 321 4 1 58 1 8 49 0 1 4 40 43 248 9 7 27 3 0 34 chain 273601 chr2 242193529 + 136685405 136689310 L1PB1 5432 + 1611 5422 7618 90 0 1 7 7 8 126 2 6 268 0 1 325 6 9 48 3 1 11 83 0 306 0 2 13 7 1 195 0 1 211 0 1 720 0 3 167 0 1 32 18 22 30 0 5 234 0 5 167 3 0 219 3 0 130 1 0 5 1 2 10 4 3 17 14 16 65 21 19 22 1 0 11 1 0 10 6 2 9 2 0 52 2 1 16 8 7 36 2 1 15 2 0 6 14 7 17 13 10 10 2 0 24 1 0 21 1 0 13 1 0 18 chain 69838 chr2 242193529 + 136700052 136700904 L1PA7 6471 + 5606 6459 24035 17 7 12 75 1 0 459 3 0 290 chain 30490 chr2 242193529 + 136704416 136704782 L1PA7 6471 + 6089 6456 41585 207 9 10 150 chain 23613 chr2 242193529 + 136712682 136712936 L1PA4 6152 + 3889 4143 51407 254 chain 100811 chr2 242193529 + 136758282 136759679 LTR12C 1709 + 0 1709 18205 41 39 43 181 13 14 12 5 6 41 10 53 73 14 10 176 0 278 184 1 0 4 4 2 106 11 4 385 13 12 84 chain 3158 chr2 242193529 + 136782578 136782661 L1MA8 2339 + 2089 2150 98283 10 3 1 16 23 3 31 chain 80748 chr2 242193529 + 136817682 136818557 L1PA2 6032 + 5154 6029 21482 875 chain 50590 chr2 242193529 + 136879689 136880260 L1P1 4361 + 2203 2775 29353 102 0 1 469 chain 29229 chr2 242193529 + 136912540 136912894 THE1A 353 + 0 353 43005 110 1 0 243 chain 121757 chr2 242193529 + 136912894 136914466 THE1A-int 1579 + 0 1579 15219 113 1 4 80 9 8 118 0 1 208 7 6 378 1 2 472 0 1 6 1 0 41 0 5 119 1 0 17 chain 27930 chr2 242193529 + 136914466 136914821 THE1A 353 + 0 353 44983 106 1 0 201 1 0 46 chain 43305 chr2 242193529 + 136936095 136936803 L1PB1 5432 + 4740 5416 32565 54 8 0 11 1 9 289 7 6 5 1 0 24 1 0 9 1 0 9 7 3 8 2 0 52 1 0 18 1 0 40 7 6 13 24 12 7 0 1 11 3 1 4 1 0 13 1 0 3 1 0 22 2 1 20 1 0 13 1 0 12 chain 22443 chr2 242193529 + 136949786 136950431 L1PA8 5853 + 5294 5853 53210 190 352 267 9 2 1 92 chain 10482 chr2 242193529 + 136984248 136984658 MSTB 430 + 10 428 69444 73 13 13 13 1 0 8 50 49 25 16 24 26 145 148 27 1 0 12 chain 125811 chr2 242193529 + 137087272 137089758 L1PB1 5432 + 3417 5383 14584 13 7 8 43 44 49 27 13 23 156 10 15 173 0 1 6 11 9 172 0 1 4 330 2 491 7 13 189 14 15 26 20 19 85 0 11 82 4 5 46 225 23 14 1 0 8 1 0 12 4 0 11 2 0 51 2 1 15 1 0 41 10 9 10 26 13 10 0 1 7 2 0 5 1 0 14 2 0 24 1 0 13 chain 489867 chr2 242193529 + 137101482 137107533 L1PA7 6471 + 392 6457 3426 4 1 0 10 1 2 710 0 2 103 0 3 327 20 22 183 0 1 401 0 4 403 4 6 66 3 0 250 0 4 251 0 1 235 8 0 8 19 1 114 1 0 43 0 1 457 4 1 5 0 2 23 5 7 232 0 2 202 5 6 123 0 2 61 0 8 306 7 8 13 1 0 346 1 2 195 0 1 63 5 8 408 0 1 45 7 10 157 0 1 215 chain 3676 chr2 242193529 + 137150273 137150315 THE1C-int 1605 + 1563 1605 93776 42 chain 65727 chr2 242193529 + 137164283 137165039 L1PA5 6144 + 5387 6144 25027 607 1 0 6 7 9 135 chain 33451 chr2 242193529 + 137265206 137265567 L1PA3long 6157 + 5389 5750 39130 361 chain 125217 chr2 242193529 + 137297949 137299495 THE1A-int 1579 + 4 1578 14666 44 0 11 184 1 0 364 9 8 491 5 24 432 1 0 7 0 1 8 chain 48372 chr2 242193529 + 137329000 137332617 THE1C-int 1605 + 0 1605 30162 14 9 8 63 11 68 17 4 1 157 1 7 89 2806 732 38 50 52 82 12 13 264 chain 8828 chr2 242193529 + 137351951 137352073 MER30 238 + 123 238 72922 7 4 0 69 3 0 39 chain 515125 chr2 242193529 + 137360246 137366398 L1PA6 6164 + 0 6162 2515 118 6 8 245 25 32 106 2 1 120 0 3 1732 1 0 1208 7 5 125 1 0 245 8 5 312 0 1 91 0 4 961 0 1 839 chain 5202 chr2 242193529 + 137383165 137383242 HERVL18-int 2198 + 595 673 84669 21 5 6 51 chain 27245 chr2 242193529 + 137383484 137383860 LTR18A 364 + 0 364 45904 222 36 24 118 chain 6250 chr2 242193529 + 137403771 137403887 MER20 218 + 18 132 80175 42 23 25 7 4 0 40 chain 8924 chr2 242193529 + 137404706 137404849 L1PB1 5432 + 5158 5296 72730 11 11 9 42 2 1 16 1 0 44 1 0 15 chain 3546 chr2 242193529 + 137425148 137425207 MER2 342 + 149 208 94882 24 7 0 8 0 7 20 chain 13324 chr2 242193529 + 137466389 137466609 MER30 238 + 0 237 64580 22 7 14 65 2 0 9 4 16 27 15 15 69 chain 169883 chr2 242193529 + 137485503 137487719 L1P1 4361 + 1485 3388 11111 173 0 3 721 0 3 686 319 0 317 chain 29751 chr2 242193529 + 137514141 137514586 MLT2A2 560 + 0 560 42304 183 2 0 13 34 35 71 2 111 45 0 5 50 0 2 45 chain 348918 chr2 242193529 + 137514586 137518957 HERVL-int 5654 + 0 4362 5920 99 0 1 621 0 1 206 6 6 235 0 1 161 6 7 342 6 14 211 0 2 239 0 2 121 0 1 6 10 11 914 1 2 261 42 0 24 0 1 165 5 18 690 chain 528616 chr2 242193529 + 137554569 137560715 L1PA5 6144 + 0 6137 1889 322 17 20 66 18 20 1013 0 1 677 1 0 74 0 2 655 22 0 441 0 2 1399 0 1 603 1 5 462 2 1 373 chain 2933 chr2 242193529 + 137600396 137600452 Tigger3b 1229 + 291 345 100569 17 0 2 19 9 5 11 chain 261947 chr2 242193529 + 137622457 137625482 L1PA6 6164 + 3132 6162 7911 49 2 0 377 0 1 945 0 1 203 1 2 457 0 5 143 1 0 847 chain 27538 chr2 242193529 + 137638173 137638527 THE1A 353 + 0 351 45536 35 2 1 74 1 0 92 1 0 149 chain 117847 chr2 242193529 + 137638529 137640066 THE1A-int 1579 + 0 1574 15912 82 0 17 358 1 0 41 7 0 135 17 19 19 0 30 346 17 17 309 10 6 195 chain 28308 chr2 242193529 + 137640071 137640425 THE1A 353 + 0 353 44397 50 0 1 59 1 0 92 1 0 151 chain 26397 chr2 242193529 + 137679318 137679624 AluY 311 + 2 310 47124 85 0 1 44 6 7 171 chain 12504 chr2 242193529 + 137716263 137716771 LTR12C 1709 + 931 1525 65981 137 2 17 7 15 0 17 305 391 25 chain 4215 chr2 242193529 + 137716441 137716529 LTR12C 1709 + 671 718 85526 5 41 0 42 chain 104270 chr2 242193529 + 137720426 137721744 HERVL-int 5654 + 0 1315 17786 17 3 1 168 1 0 182 1 0 618 0 1 19 0 1 109 1 0 199 chain 15922 chr2 242193529 + 137736576 137736921 L1PB1 5432 + 5114 5430 61126 24 1 0 8 1 0 10 9 5 7 2 0 38 1 0 5 0 1 7 1 0 18 1 0 43 1 0 16 14 2 29 8 5 14 2 0 24 9 8 13 2 5 8 1 0 16 2 0 10 chain 7010 chr2 242193529 + 137802835 137802914 MER4C 627 + 2 81 77567 79 chain 57983 chr2 242193529 + 137804780 137805439 L1PA5 6144 + 5467 6135 26971 465 0 9 194 chain 36947 chr2 242193529 + 137822130 137822604 HERVH-int 3825 + 3334 3825 36776 139 1 0 88 0 1 4 1 0 48 0 1 36 0 17 157 chain 8550 chr2 242193529 + 137839143 137839247 MER30 238 + 131 238 73560 65 0 3 39 chain 24315 chr2 242193529 + 137841548 137841905 THE1B 368 + 0 368 50310 41 1 16 111 14 13 18 13 11 83 1 0 75 chain 2811 chr2 242193529 + 137850723 137850753 L1MB7 1623 + 1391 1421 101596 30 chain 472263 chr2 242193529 + 137991912 137998118 L1PA8A 6298 + 40 6281 3805 16 1 0 11 26 16 16 3 0 25 3 0 4 7 0 20 10 28 13 2 0 15 7 4 13 2 1 7 2 1 5 1 0 8 1 0 14 30 23 27 30 23 92 1 0 9 6 4 79 1 0 14 7 9 70 5 6 158 0 1 4 28 53 262 0 1 38 6 0 451 0 27 182 1 2 86 7 10 10 0 1 65 0 3 70 6 5 32 0 1 326 7 0 174 0 4 13 0 1 162 0 4 206 0 4 233 1 0 20 3 4 126 2 3 11 4 0 55 0 4 544 2 1 237 8 6 954 1 0 801 0 3 103 0 2 113 1 2 90 chain 35587 chr2 242193529 + 138043672 138044095 L1PA6 6164 + 5728 6152 37666 287 1 2 135 chain 32664 chr2 242193529 + 138142422 138142795 L1PA5 6144 + 5769 6142 39791 373 chain 3893 chr2 242193529 + 138146755 138146801 MADE1 96 + 0 46 92190 46 chain 35360 chr2 242193529 + 138198811 138199252 L1PA7 6471 + 6032 6461 37794 164 4 0 122 3 4 102 10 1 36 chain 60551 chr2 242193529 + 138253832 138254629 LTR12 884 + 0 883 26216 14 0 1 208 0 2 11 1 5 5 0 66 66 2 0 166 1 2 211 0 8 33 0 6 79 chain 257716 chr2 242193529 + 138256587 138259542 L1PA4 6152 + 3145 6140 8036 725 6 8 59 2 3 210 0 29 172 0 4 669 0 1 279 0 4 8 1 0 4 0 1 577 1 0 242 chain 79190 chr2 242193529 + 138261709 138262791 MER11A 1151 + 0 1151 21801 55 0 99 76 1 0 64 4 0 149 0 1 94 0 1 145 5 6 120 0 26 26 43 0 22 18 0 38 0 1 62 5 11 155 chain 95081 chr2 242193529 + 138290277 138291338 L1PA5 6144 + 3323 4385 18899 34 1 2 1026 chain 18292 chr2 242193529 + 138342748 138343173 MSTA 426 + 0 426 58370 19 0 30 7 33 3 38 13 11 35 13 19 28 78 74 35 11 12 115 chain 34505 chr2 242193529 + 138403570 138404034 LTR3B_ 500 + 0 446 38348 206 0 1 34 4 7 55 0 1 103 0 2 17 25 0 20 chain 75355 chr2 242193529 + 138425680 138426771 MER11B 1079 + 0 1079 22755 363 1 2 60 4 3 95 0 1 138 12 11 45 1 0 23 43 61 8 32 0 15 0 1 53 0 1 29 0 1 7 0 1 131 2 1 29 chain 72789 chr2 242193529 + 138465955 138467426 L1PA3long 6157 + 4692 6155 23361 395 11 0 395 0 3 670 chain 121596 chr2 242193529 + 138483233 138484581 L1PA5 6144 + 4613 5965 15241 1278 0 4 70 chain 4500 chr2 242193529 + 138566550 138566621 MADE1 96 + 9 96 88323 15 9 25 47 chain 522084 chr2 242193529 + 138795654 138802086 L1PA7 6471 + 3 6461 2177 408 0 1 13 0 9 25 0 1 9 0 1 710 0 2 577 1 0 36 6 7 130 0 1 283 0 3 52 0 1 141 0 4 289 4 8 386 0 4 258 1 2 120 4 2 87 0 1 166 0 1 88 2 0 589 0 1 155 1 0 4 0 1 90 1 9 433 1 0 200 4 6 180 11 1 123 1 0 834 3 0 6 chain 12027 chr2 242193529 + 138872499 138872632 SVA_E 1901 + 1762 1895 66804 133 chain 12182 chr2 242193529 + 138888957 138889101 L1PA7 6471 + 3331 3476 66506 114 0 1 30 chain 10890 chr2 242193529 + 138889110 138889246 L1PA7 6471 + 3486 3622 68713 136 chain 15972 chr2 242193529 + 138889246 138889471 L1PA7 6471 + 3623 3829 61062 167 25 0 14 0 6 19 chain 38183 chr2 242193529 + 138889471 138889916 L1PA7 6471 + 3830 4275 35922 145 1 0 33 0 1 266 chain 23457 chr2 242193529 + 138889917 138890195 L1PA7 6471 + 4278 4556 51657 278 chain 8589 chr2 242193529 + 138890196 138890304 L1PA7 6471 + 4558 4669 73471 40 0 1 8 0 2 60 chain 22923 chr2 242193529 + 138890304 138890627 L1PA7 6471 + 4670 5030 52481 118 1 0 9 6 8 45 0 35 64 5 6 75 chain 89515 chr2 242193529 + 138890938 138892023 L1PA7 6471 + 5028 6118 19757 171 0 4 418 1 0 4 1 0 73 0 2 343 1 2 73 chain 28838 chr2 242193529 + 138892023 138892372 L1PA7 6471 + 6119 6468 43573 349 chain 28843 chr2 242193529 + 138912849 138913191 L1PA7 6471 + 6091 6438 43562 86 0 1 38 0 1 127 0 3 91 chain 237269 chr2 242193529 + 138931340 138934750 L1PA8A 6298 + 34 5619 8542 6 1 0 16 1 0 14 5 0 7 6 0 25 3 0 17 19 11 17 2 1 9 2 1 15 1 0 4 2 1 11 2 0 13 2 0 6 1 0 8 61 50 29 17 15 25 12 0 64 10 8 19 1 0 7 4 2 78 1 0 91 1 0 69 6 5 131 1 15 177 4 2214 47 0 1 29 0 1 79 26 20 312 0 1 173 0 1 33 9 18 200 0 1 261 0 2 110 0 1 169 0 5 404 13 13 127 0 1 8 0 1 4 1 0 71 0 1 271 5 4 35 chain 12575 chr2 242193529 + 138990049 138990202 MER41B 635 + 481 635 65842 30 0 1 123 chain 61052 chr2 242193529 + 139010857 139011577 L1PA7 6471 + 5651 6381 26092 25 0 10 695 chain 3412 chr2 242193529 + 139090158 139090196 MER66B 489 + 295 333 95982 38 chain 65321 chr2 242193529 + 139103521 139104227 L1PA2 6032 + 5324 6030 25102 706 chain 132801 chr2 242193529 + 139107567 139109275 L1PA8A 6298 + 2170 3900 13754 53 0 2 7 2 0 13 0 2 260 8 9 169 0 1 706 1 0 67 6 12 77 0 3 235 0 9 78 1 2 25 chain 8350 chr2 242193529 + 139128364 139128480 LTR8 732 + 586 702 74023 15 3 0 7 0 3 91 chain 448951 chr2 242193529 + 139208633 139214597 HERVL-int 5654 + 0 5652 4412 213 11 6 179 0 1 5 0 1 239 12 5 141 9 7 166 0 5 121 3 5 437 0 1 325 0 1 4 1 0 201 8 17 184 327 4 54 0 1 4 5 4 389 14 0 7 0 14 160 19 0 8 1 13 101 6 10 44 1 4 576 4 7 300 3 4 11 0 1 450 10 9 785 0 1 204 0 1 222 chain 29510 chr2 242193529 + 139214599 139215001 MLT2A1 477 + 0 477 42595 141 1 2 26 0 4 106 1 0 45 1 0 51 6 78 24 chain 22172 chr2 242193529 + 139218991 139219263 THE1B-int 1605 + 1325 1598 53607 267 0 1 5 chain 25465 chr2 242193529 + 139286914 139287587 L1PB1 5432 + 4691 5422 48531 112 6 7 14 0 12 15 52 161 82 50 20 24 1 0 8 1 0 9 30 24 40 1 0 17 1 0 44 1 0 12 116 95 4 1 0 13 1 0 18 chain 298563 chr2 242193529 + 139307940 139311224 L1PA3long 6157 + 2868 6157 6871 2574 0 1 103 0 3 449 2 0 8 3 6 145 chain 54166 chr2 242193529 + 139349895 139350530 L1PA7 6471 + 2374 3012 28164 324 1 3 7 0 1 303 chain 111427 chr2 242193529 + 139372116 139373338 L1PA3long 6157 + 4925 6147 16886 1222 chain 102125 chr2 242193529 + 139410158 139411367 LTR12C 1709 + 0 1709 18049 253 0 1 319 6 5 72 0 485 89 0 4 32 0 6 174 0 1 67 6 10 191 chain 32293 chr2 242193529 + 139424539 139424915 L1PA7 6471 + 6080 6456 40116 376 chain 67397 chr2 242193529 + 139443596 139444336 L1P1 4361 + 1417 2157 24599 740 chain 24280 chr2 242193529 + 139519072 139519433 THE1C 375 + 0 373 50373 106 29 37 39 13 13 64 0 4 110 chain 249030 chr2 242193529 + 139649031 139652123 L1PA8 5853 + 591 3659 8264 148 4 3 402 9 11 188 0 1 13 0 1 391 1 0 269 12 0 62 1 0 29 17 6 267 0 2 231 1 0 225 16 12 787 5 6 14 chain 19555 chr2 242193529 + 139661259 139661506 AluSp 311 + 55 296 56949 14 6 0 227 chain 59757 chr2 242193529 + 139673255 139674339 MER4E 760 + 0 760 26443 170 7 0 10 0 1 42 0 2 219 312 0 131 0 1 5 14 5 174 chain 4488 chr2 242193529 + 139730702 139730770 MER4C 627 + 560 627 88401 51 4 3 13 chain 53492 chr2 242193529 + 139743925 139744632 LTR12 884 + 0 869 28400 130 2 0 57 0 157 33 2 0 85 0 4 97 6 14 122 15 12 158 chain 58038 chr2 242193529 + 139821407 139822053 L1PA4 6152 + 4412 5058 26949 646 chain 4611 chr2 242193529 + 139827658 139827714 MER34A1 583 + 0 56 87746 56 chain 19983 chr2 242193529 + 139853161 139853411 THE1D-int 1627 + 0 250 56406 250 chain 34852 chr2 242193529 + 139867614 139868163 MLT2A2 560 + 0 560 38124 165 69 68 144 25 36 74 0 1 72 chain 31865 chr2 242193529 + 139871970 139872530 LTR9B 643 + 0 585 40445 39 3 5 8 1 0 9 13 36 90 6 7 10 1 0 58 13 15 57 11 10 67 46 47 54 6 5 68 chain 92704 chr2 242193529 + 139879468 139880492 L1P1 4361 + 3182 4205 19233 969 1 0 54 chain 66987 chr2 242193529 + 139883731 139884546 L1PA7 6471 + 5652 6466 24707 48 0 2 85 3 0 679 chain 184568 chr2 242193529 + 139929830 139931857 L1PA3long 6157 + 2114 4143 10361 1056 0 1 516 0 1 455 chain 119590 chr2 242193529 + 139959129 139960653 THE1A-int 1579 + 30 1567 15594 5 0 3 445 5 6 152 3 6 527 5 11 382 chain 27407 chr2 242193529 + 139960671 139961019 THE1A 353 + 7 353 45692 75 0 1 25 5 2 243 chain 9324 chr2 242193529 + 140054606 140054715 L1PA7 6471 + 6357 6466 71865 109 chain 112050 chr2 242193529 + 140073613 140074925 LTR12C 1709 + 0 1709 16807 196 0 6 51 0 1 134 0 10 252 0 278 184 1 0 5 3 1 48 1 0 58 0 4 168 0 102 211 chain 28049 chr2 242193529 + 140161582 140162027 L1PA11 4918 + 4084 4517 44789 210 16 20 14 5 0 13 1 0 54 1 0 4 10 8 68 2 0 13 2 1 19 4 0 9 chain 36517 chr2 242193529 + 140207386 140207980 L1PA15 4387 + 3717 4313 37070 15 0 11 7 1 0 63 0 2 76 3 1 41 1 0 76 0 4 91 1 0 27 1 0 24 1 2 25 4 3 20 22 17 34 17 14 12 1 0 31 chain 4195 chr2 242193529 + 140220460 140220507 tRNA-Gln-CAA_ 72 + 25 72 90167 47 chain 50051 chr2 242193529 + 140329241 140329926 L1PA10 4194 + 3428 4102 29544 18 0 3 77 0 1 399 24 26 125 17 0 25 chain 76317 chr2 242193529 + 140414532 140415605 MER11A 1151 + 2 1146 22485 83 0 91 54 0 4 60 4 0 32 0 2 115 0 1 94 5 6 140 5 6 53 0 4 88 25 1 11 5 12 25 18 0 36 0 1 62 0 1 127 7 11 24 chain 29645 chr2 242193529 + 140426393 140426801 LTR7 482 + 2 482 42439 67 8 46 109 8 40 43 0 1 4 1 0 70 0 2 98 chain 277140 chr2 242193529 + 140426803 140430177 HERVH-int 3825 + 0 3825 7515 333 1 0 62 27 26 25 86 45 5 0 2 17 0 1 6 5 273 358 1 0 433 0 5 409 0 6 131 0 1 932 9 11 39 0 210 495 chain 29653 chr2 242193529 + 140431991 140432391 LTR7 482 + 0 470 42427 69 8 46 110 7 39 206 chain 142024 chr2 242193529 + 140518949 140520604 L1PA6 6164 + 4492 6154 12934 68 0 1 4 1 0 839 1 0 11 1 0 146 0 8 224 0 1 360 chain 60666 chr2 242193529 + 140647738 140648446 L1PA5 6144 + 5433 6142 26187 561 0 1 147 chain 30100 chr2 242193529 + 140651184 140651512 L1PA2 6032 + 5701 6029 41945 328 chain 6757 chr2 242193529 + 140679978 140680069 MER30 238 + 141 235 78453 48 1 4 42 chain 17044 chr2 242193529 + 140725507 140725695 L1PA5 6144 + 5956 6144 59764 188 chain 54840 chr2 242193529 + 140739753 140740655 L1PB1 5432 + 4544 5427 27929 84 0 1 84 0 1 66 22 14 10 7 15 104 0 2 58 0 1 11 0 3 6 10 13 86 13 11 20 1 0 11 7 6 7 4 0 9 2 0 53 0 3 14 1 0 59 3 0 8 13 4 15 7 5 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 14 1 0 5 1 0 4 chain 15905 chr2 242193529 + 140799780 140799967 L1P1 4361 + 4 191 61143 187 chain 34751 chr2 242193529 + 140799995 140800410 L1PA5 6144 + 5731 6143 38186 395 1 0 9 2 0 8 chain 36738 chr2 242193529 + 140839299 140839827 MLT2A2 560 + 0 558 36933 170 2 10 12 5 13 106 0 1 93 8 20 65 0 1 5 0 1 5 16 15 41 chain 186016 chr2 242193529 + 140874497 140877489 MER4-int 2692 + 1 2692 10296 10 1 0 15 0 1 6 5 3 11 19 18 34 2 0 18 9 1 101 307 0 308 12 21 105 0 3 54 10 9 50 14 27 15 7 3 14 6 8 23 0 1 145 0 4 168 20 24 246 0 1 4 1 2 12 1 0 5 0 1 6 0 1 26 7 5 320 13 12 179 7 4 163 0 2 5 0 1 5 3 0 71 1 0 3 3 0 120 0 7 7 21 8 259 0 1 15 chain 15279 chr2 242193529 + 140980660 140980879 L1PB2 3958 + 3624 3838 61945 57 1 0 74 2 0 19 2 1 37 1 0 26 chain 95093 chr2 242193529 + 141034305 141035363 L1PA3long 6157 + 5092 6155 18898 217 0 3 590 1 3 250 chain 143015 chr2 242193529 + 141043857 141045432 L1PA2 6032 + 4455 6028 12859 792 0 1 766 3 0 14 chain 69884 chr2 242193529 + 141050607 141051514 L1PA8 5853 + 4668 5581 24021 56 0 2 285 1 3 69 5 7 328 0 1 141 7 6 15 chain 25806 chr2 242193529 + 141057452 141057804 THE1B 368 + 0 368 48006 44 0 15 12 1 0 101 1 0 26 17 21 74 1 0 75 chain 134302 chr2 242193529 + 141070198 141071715 L1P1 4361 + 2825 4341 13618 1285 0 2 38 1 0 155 1 0 23 2 1 12 chain 6530 chr2 242193529 + 141112098 141112180 MER61D 487 + 387 468 79231 17 1 0 64 chain 160268 chr2 242193529 + 141121437 141123252 L1PA5 6144 + 4320 6144 11733 302 2 0 285 0 1 386 8 10 506 0 1 182 1 8 143 chain 38157 chr2 242193529 + 141127153 141127601 L1PA7 6471 + 5724 6173 35942 428 0 1 20 chain 28744 chr2 242193529 + 141130741 141131135 L1PA8 5853 + 5411 5847 43714 153 1 0 46 2 0 67 25 67 16 1 0 52 0 4 31 chain 23782 chr2 242193529 + 141159811 141160098 L1PA8A 6298 + 5999 6291 51139 242 2 7 43 chain 85653 chr2 242193529 + 141202995 141204108 L1P2 5180 + 1948 3070 20513 359 10 5 5 0 2 9 1 5 51 0 1 6 0 3 145 5 3 4 1 0 29 2 9 486 chain 254164 chr2 242193529 + 141219715 141223562 L1PA10 4194 + 250 4116 8130 21 2 0 15 77 48 19 1 0 8 6 5 8 1 0 6 1 0 14 4 0 9 1 0 18 36 43 20 2 0 71 23 27 7 4 0 56 0 4 14 0 1 93 0 1 56 6 5 67 0 3 22 0 2 43 3 4 53 0 3 48 1 10 51 0 3 19 16 8 136 9 0 122 0 1 34 0 1 4 5 4 15 0 11 97 0 9 215 0 2 21 16 7 118 9 11 57 0 3 5 31 9 246 8 0 10 0 8 286 17 19 16 6 36 21 0 4 29 4 6 11 5 7 80 0 1 89 5 13 43 3 4 208 2 0 81 15 8 181 0 2 322 6 7 131 26 25 16 0 4 25 0 1 139 chain 16519 chr2 242193529 + 141309614 141309825 L1PA8A 6298 + 6081 6291 60340 126 2 1 83 chain 46487 chr2 242193529 + 141384505 141385085 LTR14C 587 + 0 587 30854 440 11 18 129 chain 3782 chr2 242193529 + 141399271 141399315 LTR51 675 + 373 417 92976 44 chain 27865 chr2 242193529 + 141421246 141421545 AluYa5 310 + 0 298 45089 132 1 0 166 chain 13400 chr2 242193529 + 141462414 141462614 L1PA8 5853 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4 30 8 5 6 0 1 22 chain 60931 chr2 242193529 + 141683861 141684607 L1PA7 6471 + 5730 6467 26131 161 12 0 390 1 0 174 0 4 8 chain 12869 chr2 242193529 + 141700571 141700746 MER39B 650 + 47 225 65310 38 6 9 131 chain 44113 chr2 242193529 + 141815330 141815916 LTR12F 595 + 0 595 32074 20 0 9 74 0 1 39 3 1 33 16 8 22 1 10 378 chain 3872 chr2 242193529 + 141955115 141955161 MER53 195 - 3 49 92342 46 chain 217123 chr2 242193529 + 141963405 141965755 L1PA2 6032 + 3678 6027 9117 2340 1 0 9 chain 107013 chr2 242193529 + 142015210 142016824 L1PA7 6471 + 5147 6457 17435 96 1 2 281 2 0 94 1 4 20 314 2 52 0 2 105 0 3 507 1 2 140 chain 2670 chr2 242193529 + 142115879 142115922 L1MC4a 1092 + 374 415 102603 36 2 0 5 chain 20094 chr2 242193529 + 142155599 142155818 L1PA3long 6157 + 5938 6157 56263 219 chain 3102 chr2 242193529 + 142404382 142404415 L1MA5 2750 + 2322 2355 98774 33 chain 146629 chr2 242193529 + 142430238 142431871 L1PA4 6152 + 3597 5230 12566 150 0 1 887 1 0 595 chain 107299 chr2 242193529 + 142453776 142455477 L1PA8 5853 + 4430 5853 17406 87 59 64 428 3 1 174 271 0 380 1 0 44 2 0 71 1 0 8 0 6 7 11 1 39 2 1 19 1 0 93 chain 110302 chr2 242193529 + 142545878 142547280 LTR12C 1709 + 0 1709 17038 299 1 2 407 1 280 12 0 41 71 1 0 4 10 8 100 11 4 399 11 7 75 chain 12269 chr2 242193529 + 142563320 142563490 MER51C 639 + 472 639 66336 46 1 2 43 4 0 76 chain 38840 chr2 242193529 + 142597674 142598121 L1PA5 6144 + 5694 6144 35475 116 0 1 21 0 1 204 1 2 105 chain 20567 chr2 242193529 + 142618045 142618340 L1PA8 5853 + 5564 5853 55685 44 2 0 71 1 0 9 6 5 47 2 1 19 2 1 92 chain 18120 chr2 242193529 + 142674946 142675165 L1PA7 6471 + 6252 6468 58546 61 0 1 147 4 0 7 chain 127213 chr2 242193529 + 142701925 142703310 SVA_D 2077 + 42 2073 14399 645 0 157 73 0 489 667 chain 196334 chr2 242193529 + 142711570 142714007 L1PA7 6471 + 4044 6466 9835 156 2 1 58 11 10 148 6 5 112 1 0 345 4 0 98 21 15 615 8 7 373 1 0 394 0 3 8 9 6 45 0 1 22 chain 518831 chr2 242193529 + 142727867 142733828 L1PA4 6152 + 1 5970 2321 166 0 1 279 30 41 132 12 4 494 21 21 422 0 2 133 0 1 965 1 0 4 0 1 618 0 1 4 13 14 732 0 1 422 8 0 1091 0 5 262 0 1 152 chain 6080 chr2 242193529 + 142849852 142850175 MER34A 573 + 3 384 80801 56 160 175 26 38 48 13 10 43 20 chain 25064 chr2 242193529 + 142925982 142926288 L1PA7 6471 + 6161 6469 49175 21 0 1 122 0 8 5 7 0 151 chain 558631 chr2 242193529 + 143006042 143012076 L1PA2 6032 + 0 6032 214 789 1 0 2274 1 0 2969 chain 14641 chr2 242193529 + 143048761 143048924 L1PA8A 6298 + 5593 5756 62747 163 chain 19875 chr2 242193529 + 143053475 143053805 THE1B 368 + 0 357 56571 44 14 29 96 1 0 26 1 0 6 34 48 108 chain 21199 chr2 242193529 + 143074589 143074944 THE1B 368 + 0 356 54885 66 2 4 102 1 0 20 41 51 41 12 2 70 chain 28060 chr2 242193529 + 143074971 143075317 THE1B-int 1605 + 15 362 44777 323 0 1 23 chain 20084 chr2 242193529 + 143219089 143219374 Tigger3a 397 + 1 337 56277 73 15 65 135 1 0 5 0 2 56 chain 11589 chr2 242193529 + 143224856 143224992 L1PA7 6471 + 6123 6258 67591 8 1 0 127 chain 34982 chr2 242193529 + 143238077 143238540 L1PA11 4918 + 4053 4508 38026 275 4 0 65 2 1 81 2 0 14 1 0 19 chain 101512 chr2 242193529 + 143303398 143304547 L1PA5 6144 + 4914 6077 18125 137 0 1 90 0 5 146 0 8 776 chain 60622 chr2 242193529 + 143304724 143305477 L1PA7 6471 + 5705 6466 26198 7 0 3 340 1 0 12 0 1 44 1 0 113 11 15 207 5 7 12 chain 163293 chr2 242193529 + 143326709 143328740 L1PA7 6471 + 4252 6466 11531 59 0 3 104 1 0 36 1 0 215 0 8 59 3 0 56 1 15 329 0 138 32 0 1 23 2 3 136 0 5 150 6 9 75 0 3 82 0 3 191 0 3 148 0 3 76 1 0 16 0 4 229 chain 11710 chr2 242193529 + 143328765 143328987 L1MA3 4352 + 4143 4351 67383 92 4 0 24 4 2 17 12 10 26 1 0 12 13 8 17 chain 16929 chr2 242193529 + 143370316 143370507 L1PA3long 6157 + 5965 6156 59877 191 chain 22751 chr2 242193529 + 143415680 143416113 L1PB1 5432 + 5021 5420 52755 82 1 2 9 3 0 24 2 1 8 1 0 9 2 0 3 2 0 8 2 0 53 2 1 15 1 0 44 1 0 16 3 0 6 21 11 14 8 5 13 3 1 24 1 0 21 1 0 13 1 0 16 chain 106889 chr2 242193529 + 143567943 143569177 L1PA6 6164 + 4927 6162 17448 389 0 7 188 0 1 644 7 0 6 chain 84258 chr2 242193529 + 143637745 143638664 L1PA2 6032 + 5113 6032 20757 919 chain 552814 chr2 242193529 + 143661562 143667595 L1PA2 6032 + 2 6032 559 239 0 4 335 0 4 342 0 1 1387 0 4 257 5 0 594 0 1 2848 12 0 14 chain 11887 chr2 242193529 + 143747069 143747248 L1PA8 5853 + 5679 5847 67041 9 1 0 52 2 1 19 1 0 58 17 9 20 chain 3585 chr2 242193529 + 143846381 143846425 Ricksha_c 1012 + 553 596 94547 32 1 0 11 chain 566342 chr2 242193529 + 143860956 143866987 L1HS 6032 + 0 6032 52 3159 0 1 2872 chain 4472 chr2 242193529 + 143897281 143897330 HY3 101 + 22 71 88481 49 chain 36460 chr2 242193529 + 143908957 143909615 MER50 708 + 59 664 37097 14 10 21 56 21 22 117 3 0 31 61 0 38 9 8 73 5 7 59 1 0 59 7 6 66 8 11 12 3 0 5 chain 7524 chr2 242193529 + 143912349 143912467 MER2 342 + 158 294 76067 45 0 22 35 7 3 31 chain 90454 chr2 242193529 + 143991395 143992528 SVA_D 2077 + 998 2056 19594 10 0 51 263 48 0 66 0 1 31 78 0 345 1 0 291 chain 3522 chr2 242193529 + 143991668 143991716 SVA_D 2077 + 968 1017 34454 24 0 1 24 chain 5724 chr2 242193529 + 143991813 143991891 SVA_D 2077 + 1117 1195 34454 78 chain 535043 chr2 242193529 + 144104128 144110535 L1PA5 6144 + 0 6128 1618 1026 0 2 196 0 1 591 1 0 1434 0 2 178 0 1 799 307 0 424 0 18 346 1 0 69 4 4 174 5 10 19 0 1 833 chain 23253 chr2 242193529 + 144256513 144256877 L1PA8 5853 + 5507 5853 51999 57 1 0 42 4 2 70 38 26 10 1 0 26 2 1 19 1 0 93 chain 3197 chr2 242193529 + 144259499 144259535 MADE1 96 - 60 96 97918 36 chain 48487 chr2 242193529 + 144270176 144270821 L1PA8 5853 + 5215 5853 30125 305 0 1 43 7 6 38 2 0 67 5 4 21 1 0 39 3 2 19 1 0 9 8 7 77 chain 3758 chr2 242193529 + 144277202 144277272 MER33 330 + 242 319 93148 7 1 0 34 13 21 15 chain 8705 chr2 242193529 + 144330191 144330381 Tigger3a 397 + 54 324 73202 21 45 127 46 11 9 67 chain 152182 chr2 242193529 + 144721671 144723348 L1PA3long 6157 + 2287 3964 12217 1677 chain 76940 chr2 242193529 + 144747184 144748193 MER11C 1089 + 0 1052 22333 261 1 4 54 1 18 230 23 32 144 6 7 21 6 14 91 1 5 21 1 0 96 0 2 52 chain 55036 chr2 242193529 + 144760796 144761646 L1PB 1623 + 748 1572 27863 9 0 1 319 5 9 237 13 23 100 1 0 7 2 1 30 111 72 16 chain 17486 chr2 242193529 + 144762073 144762286 L1P1 4361 + 4 742 59255 86 0 525 127 chain 329937 chr2 242193529 + 144784984 144789083 L1P3 4156 + 6 4139 6219 230 67 65 18 2 1 610 3 4 303 0 4 48 2 3 102 0 3 130 0 1 629 0 5 471 3 0 108 0 3 142 0 4 59 0 9 321 0 10 193 2 1 16 0 1 19 1 2 392 0 1 193 2 0 7 2 1 24 chain 33892 chr2 242193529 + 144818023 144818454 L1PA8 5853 + 5429 5853 38791 135 1 0 44 2 0 70 2 1 11 1 0 50 2 1 19 1 0 93 chain 4394 chr2 242193529 + 144924876 144925213 MLT1F2 592 + 132 535 88920 37 262 328 38 chain 8823 chr2 242193529 + 145003019 145003187 MER47B 469 + 292 469 72943 74 27 34 21 13 15 33 chain 5144 chr2 242193529 + 145097560 145097665 MER20 218 + 30 137 84939 5 2 0 42 29 33 27 chain 92085 chr2 242193529 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71 1 3 264 1 0 34 7 11 59 1 2 288 4 0 399 chain 111931 chr2 242193529 + 146084035 146085387 L1PA7 6471 + 5079 6456 16825 9 0 22 355 0 1 15 0 1 140 2 0 76 0 2 438 0 1 317 chain 4678 chr2 242193529 + 146133526 146133635 MER101B 537 + 258 375 87392 13 37 45 59 chain 5361 chr2 242193529 + 146145155 146145217 U7 62 + 0 62 83899 62 chain 79824 chr2 242193529 + 146152851 146153757 L1PA4 6152 + 3516 4422 21655 906 chain 19026 chr2 242193529 + 146197871 146198232 THE1B 368 + 0 368 57522 19 3 0 25 18 33 92 1 0 23 63 61 44 2 0 71 chain 34093 chr2 242193529 + 146211348 146211766 L1PA6 6164 + 5715 6133 38636 418 chain 37275 chr2 242193529 + 146272108 146272664 L1PB 1623 + 942 1500 36569 28 0 11 77 20 21 228 4 0 139 1 0 7 8 7 24 1 0 4 3 0 12 chain 379560 chr2 242193529 + 146299163 146304412 L1PB1 5432 + 84 5419 5492 132 7 8 320 1 0 57 4 1 160 0 1 69 9 6 238 0 1 315 13 5 529 0 4 114 3 7 437 0 7 115 2 3 174 4 20 136 0 1 147 3 4 383 7 7 163 1 0 80 2 4 10 21 1 219 1 0 5 0 1 236 1 0 328 1 49 40 3 0 482 110 169 8 1 0 16 4 1 14 8 0 16 8 5 14 2 0 27 2 1 17 1 0 13 1 0 15 chain 124717 chr2 242193529 + 146308052 146309443 L1PA4 6152 + 4583 5976 14744 467 0 1 333 0 1 591 chain 6260 chr2 242193529 + 146383621 146383777 MER53 195 + 10 195 80124 57 54 82 17 1 2 27 chain 508966 chr2 242193529 + 146405741 146411341 L1PA2 6032 + 3 6032 2807 253 1 0 4411 29 456 106 0 3 800 chain 15349 chr2 242193529 + 146422284 146422479 L1PA11 4918 + 4151 4349 61852 162 0 4 10 1 0 22 chain 51636 chr2 242193529 + 146499736 146500375 PABL_A 660 + 0 649 28988 84 7 16 31 5 6 512 chain 25476 chr2 242193529 + 146539892 146540292 LTR7 482 + 0 482 48515 54 23 61 109 8 40 50 0 10 41 1 2 52 17 18 45 chain 11580 chr2 242193529 + 146600025 146600198 MER30 238 + 49 238 67606 54 11 0 10 1 25 58 0 3 39 chain 264411 chr2 242193529 + 146616296 146619541 L1PA7 6471 + 3210 6469 7841 290 0 5 22 1 2 479 0 1 516 7 8 68 5 7 203 2 6 514 1 2 286 1 0 68 5 6 765 1 0 11 chain 511509 chr2 242193529 + 146641829 146648001 L1PA6 6164 + 0 6161 2687 250 1 0 268 2 1 908 10 24 26 16 17 183 7 8 123 10 11 400 4 0 114 0 1 67 0 1 774 13 0 11 6 4 503 1 0 3 1 0 1195 1 0 148 8 0 314 0 2 234 0 3 560 3 0 8 chain 261032 chr2 242193529 + 146702152 146706350 L1MA1 4479 + 228 4129 7941 51 3 1 389 1 4 24 0 4 50 25 39 121 1 0 89 0 1 115 21 14 59 1 2 47 19 9 59 1 4 433 0 6 68 1 0 118 19 23 11 4 0 9 1 9 65 15 14 17 0 1 68 6 13 9 0 6 11 0 3 136 0 1 80 315 0 21 2 3 34 0 1 6 12 14 112 1 0 65 2 1 103 2 0 33 1 0 45 0 1 15 1 0 82 1 2 9 1 0 27 2 0 158 1 0 5 11 9 18 5 0 76 1 0 14 3 0 116 11 8 128 9 6 31 19 15 49 10 11 86 1 0 18 32 41 52 1 0 13 4 1 19 1 0 86 14 10 34 5 15 74 1 0 29 2 0 22 chain 36952 chr2 242193529 + 146774661 146775200 MLT2A2 560 + 0 549 36772 28 0 5 208 2 1 89 5 13 13 0 1 23 8 0 7 6 25 27 17 3 106 chain 43227 chr2 242193529 + 146780812 146781362 MLT2A2 560 + 0 560 32626 399 3 14 60 1 0 87 chain 532793 chr2 242193529 + 146788403 146794532 L1PA4 6152 + 3 6152 1719 537 1 0 1574 21 1 132 0 1 370 1 0 26 0 26 608 12 8 404 0 1 1457 0 4 152 0 4 415 0 4 274 1 2 138 0 5 6 chain 476026 chr2 242193529 + 146807687 146814740 L1PA8A 6298 + 40 6291 3720 18 2 1 7 3 0 7 13 6 21 3 0 19 15 18 10 2 1 9 2 1 13 1 0 6 1 0 12 2 0 15 2 0 4 1 0 13 1 0 8 2 1 5 1 0 8 1 0 8 1 22 7 2 0 27 3 2 14 3 0 7 2 0 5 6 0 73 2 0 14 2 0 11 4 2 103 12 14 41 13 0 8 25 0 102 8 9 213 1 0 109 0 1 64 0 4 26 6 0 13 1 0 184 1 2 75 5 0 155 0 1 176 1 0 26 0 13 205 0 1 49 0 5 52 0 3 406 19 6 233 1 7 17 9 13 576 4 8 11 5 0 82 1 5 35 1 0 4 0 1 11 11 9 352 6 8 424 1 0 306 0 1 709 301 0 64 20 23 88 0 3 48 470 0 32 0 1 217 0 1 53 0 1 319 1 3 23 1 2 100 chain 37179 chr2 242193529 + 146813528 146813994 LTR2 463 + 0 463 36625 200 4 0 150 24 25 88 chain 15823 chr2 242193529 + 146846001 146846190 L1PA7 6471 + 6279 6468 61253 189 chain 107038 chr2 242193529 + 146864355 146865982 L1PB1 5432 + 3906 5400 17430 198 10 6 383 0 5 35 5 0 95 0 2 92 0 1 81 1 0 11 3 0 222 16 16 46 105 9 6 1 0 20 1 0 13 17 12 8 2 0 53 2 1 16 6 0 44 1 0 15 1 0 4 18 9 19 11 9 9 2 0 24 1 0 30 chain 20941 chr2 242193529 + 146896935 146897216 L1PA10 4194 + 3884 4161 55209 232 3 0 34 1 0 11 chain 5661 chr2 242193529 + 146948948 146949071 MER58C 217 + 68 214 82509 39 43 66 41 chain 26700 chr2 242193529 + 146980014 146980380 THE1C 375 + 0 363 46684 87 0 1 91 0 3 19 18 12 137 1 0 13 chain 27545 chr2 242193529 + 146998540 146998877 LTR17 781 + 414 772 45520 284 1 23 27 1 0 24 chain 45378 chr2 242193529 + 147000583 147001123 HERV17-int 4347 + 12 547 31376 15 1 0 52 1 0 34 2 0 26 1 0 158 0 1 158 1 0 91 chain 81454 chr2 242193529 + 147112884 147113788 L1PA3long 6157 + 5251 6157 21342 404 1 2 444 0 1 55 chain 526044 chr2 242193529 + 147150792 147156792 L1PA4 6152 + 2 5975 1996 578 1 0 256 17 0 341 0 6 61 1 0 171 0 4 698 0 1 1053 1 0 12 2 0 160 20 4 312 3 2 1692 0 1 621 chain 503532 chr2 242193529 + 147182222 147188529 L1PA7 6471 + 5 6466 3012 143 0 6 6 17 11 111 5 13 615 4 118 445 0 1 98 0 3 100 2 1 297 0 3 5 8 5 5 0 1 216 1 10 301 0 2 118 0 2 97 1 6 448 23 13 35 0 3 196 0 6 39 14 13 19 7 8 312 1 0 152 1 2 319 1 0 4 7 9 159 8 8 85 1 0 4 0 1 86 0 8 928 0 1 24 0 3 777 0 1 47 3 0 12 chain 192747 chr2 242193529 + 147281137 147283821 L1PA8 5853 + 3241 5813 9982 36 11 10 107 8 6 25 113 8 167 16 10 260 3 4 85 0 1 34 0 2 161 0 3 105 1 2 32 0 1 37 1 0 382 15 14 269 5 7 72 6 7 472 6 5 31 1 0 12 2 0 71 1 0 8 2 0 7 0 1 45 2 1 19 1 0 53 chain 50765 chr2 242193529 + 147311308 147311931 LTR12_ 688 + 0 688 29292 25 1 0 55 0 66 21 5 4 40 0 1 476 chain 420977 chr2 242193529 + 147311957 147317024 HERV9-int 5642 + 5 5077 4866 596 5 2 188 1 0 88 1 86 78 84 4 60 3 0 1269 0 4 262 2 0 333 0 3 598 6 7 1226 1 2 266 chain 47664 chr2 242193529 + 147318709 147319336 LTR12_ 688 + 0 688 30415 25 1 0 43 5 72 27 1 0 39 10 11 30 0 1 18 13 7 415 chain 32142 chr2 242193529 + 147334240 147334611 L1PA5 6144 + 5777 6142 40235 214 6 0 151 chain 11629 chr2 242193529 + 147377636 147377895 L1MC2 1988 + 1553 1818 67517 116 1 0 7 99 106 36 chain 17543 chr2 242193529 + 147389369 147389627 MER50 708 + 428 686 59190 55 33 32 88 0 1 82 chain 100252 chr2 242193529 + 147506729 147508223 LTR12C 1709 + 0 1709 18270 40 12 3 147 98 111 163 12 10 72 8 1 63 12 0 44 0 119 64 1 0 234 0 47 97 44 13 54 3 1 115 0 102 41 1 0 86 1 0 82 chain 2979 chr2 242193529 + 147593830 147593864 MLT1D 503 + 434 468 100068 34 chain 557658 chr2 242193529 + 147727004 147733028 L1PA2 6032 + 1 6031 263 4228 0 4 1783 0 2 13 chain 94376 chr2 242193529 + 147745004 147746027 L1PA3long 6157 + 5108 6134 18986 249 0 3 774 chain 458966 chr2 242193529 + 147766522 147771675 L1PA4 6152 + 0 5185 4157 28 0 2 2614 0 26 538 1 0 999 0 1 143 0 4 830 chain 2967 chr2 242193529 + 147827528 147827562 LTR12C 1709 + 1034 1068 100216 34 chain 3457 chr2 242193529 + 147827571 147827611 LTR12C 1709 + 676 716 95578 40 chain 3871 chr2 242193529 + 147827649 147827691 LTR12C 1709 + 676 718 92353 42 chain 52630 chr2 242193529 + 147931556 147932152 L1P1 4361 + 3732 4328 28691 418 1 0 45 0 2 108 1 0 23 chain 23739 chr2 242193529 + 147940334 147940831 L1PB1 5432 + 4892 5271 51212 110 23 0 101 63 0 14 35 17 12 17 12 11 3 1 50 2 1 16 6 0 34 chain 2039 chr2 242193529 + 147940983 147941051 MADE1 96 - 0 96 106110 18 26 54 24 chain 66506 chr2 242193529 + 147994919 147995875 LTR12 884 + 0 869 24816 25 1 0 51 27 0 22 3 6 61 0 4 126 36 0 83 39 8 218 12 13 252 chain 343000 chr2 242193529 + 148001383 148005544 L1PA7 6471 + 2079 6470 6010 559 1 2 199 3 1 6 1 0 242 0 1 395 1 2 8 5 3 79 0 3 250 1 0 381 0 2 310 0 2 431 2 0 40 1 0 166 4 1 56 4 0 58 3 1 27 0 11 129 0 205 585 1 5 67 10 9 55 9 28 72 chain 37155 chr2 242193529 + 148008439 148008942 LTR10F 562 + 0 562 36643 152 12 43 34 0 24 13 5 11 198 2 0 87 chain 5455 chr2 242193529 + 148015244 148015307 HSMAR1 1287 + 0 63 83433 63 chain 564253 chr2 242193529 + 148188745 148194773 L1HS 6032 + 2 6032 107 594 0 1 3975 0 1 1459 chain 7424 chr2 242193529 + 148217862 148217953 HERVH-int 3825 + 2166 2256 76329 5 1 0 85 chain 45496 chr2 242193529 + 148239895 148240415 L1PA5 6144 + 5613 6132 31307 192 1 0 327 chain 28083 chr2 242193529 + 148304781 148305092 AluYa5 310 + 1 309 44741 96 3 0 212 chain 4050 chr2 242193529 + 148346262 148346313 MER45R 1085 + 641 692 91085 51 chain 516273 chr2 242193529 + 148361722 148368478 L1PA7 6471 + 0 6467 2456 139 10 42 112 8 9 101 0 2 156 4 5 741 0 1 238 305 0 48 69 18 372 0 1 62 1 2 445 0 3 137 1 2 252 8 12 203 1 0 206 1 2 166 1 12 338 0 2 7 2 1 5 0 1 986 0 1 44 1 0 338 0 1 408 1 0 218 4 5 75 0 1 393 1 9 6 7 0 115 0 2 11 0 2 9 chain 5271 chr2 242193529 + 148363594 148363650 L1PA7 6471 + 1121 1177 84335 56 chain 11435 chr2 242193529 + 148373932 148374109 Tigger4a 237 + 29 236 67857 31 13 18 92 1 26 40 chain 492199 chr2 242193529 + 148380603 148386121 L1PA4 6152 + 618 6152 3365 117 0 1 327 0 2 348 0 10 778 0 4 1477 4 0 1347 1 0 275 0 4 844 chain 29231 chr2 242193529 + 148386436 148386746 AluYa5 310 + 0 309 42997 132 1 0 177 chain 74756 chr2 242193529 + 148424229 148425182 L1PA4 6152 + 2332 3286 22901 732 6 4 6 0 1 23 5 6 73 0 1 108 chain 57536 chr2 242193529 + 148425184 148425909 L1PA4 6152 + 3286 4011 27094 648 6 6 71 chain 169438 chr2 242193529 + 148425909 148427800 L1PA4 6152 + 4247 6152 11131 801 0 1 719 1 14 370 chain 111607 chr2 242193529 + 148427853 148429156 L1PA7 6471 + 4317 5621 16864 637 0 1 666 chain 29777 chr2 242193529 + 148429157 148429520 L1PA7 6471 + 5621 5984 42263 89 1 0 150 0 1 123 chain 37262 chr2 242193529 + 148429527 148429987 L1PA7 6471 + 5991 6452 36579 332 6 7 122 chain 8668 chr2 242193529 + 148527743 148527869 MLT1B 390 + 231 374 73295 80 0 18 13 4 3 29 chain 26307 chr2 242193529 + 148550393 148550668 AluYb8 318 + 32 307 47257 275 chain 199756 chr2 242193529 + 148562563 148565179 L1PA5 6144 + 3827 6135 9725 771 0 4 268 0 4 42 0 1 275 324 0 79 1 5 17 1 5 511 1 0 326 chain 21361 chr2 242193529 + 148596650 148596889 L1PA7 6471 + 6025 6264 54692 239 chain 16063 chr2 242193529 + 148596889 148597094 L1PA7 6471 + 6266 6470 60943 181 2 3 9 2 0 11 chain 4849 chr2 242193529 + 148661932 148661984 L1PA4 6152 + 5252 5304 86430 52 chain 73329 chr2 242193529 + 148661984 148662827 L1PA4 6152 + 5308 6151 23254 771 12 12 60 chain 10238 chr2 242193529 + 148702757 148702948 MER30 238 + 33 238 69924 25 10 11 43 4 0 6 5 20 10 1 0 5 1 7 39 3 0 39 chain 464322 chr2 242193529 + 148705368 148710897 L1PA5 6144 + 0 6035 4012 89 0 525 138 15 17 97 0 2 79 26 1 217 13 4 240 1 6 520 1 0 248 0 1 802 0 1 137 1 0 127 0 5 1095 0 1 306 7 6 217 1 0 406 1 0 428 0 2 103 0 1 214 chain 27705 chr2 242193529 + 148722410 148722881 L1PA15 4387 + 3895 4356 45309 21 0 5 12 1 0 161 0 1 4 6 5 26 1 0 44 6 7 4 1 0 22 4 0 10 1 0 50 6 3 32 32 27 27 chain 45021 chr2 242193529 + 148791683 148792205 L1PA7 6471 + 4252 4784 31572 163 1 3 245 0 8 113 chain 22357 chr2 242193529 + 148964021 148964289 AluSp 311 + 28 296 53337 268 chain 43724 chr2 242193529 + 149035342 149035839 LTR2C 499 + 0 499 32303 172 0 3 266 2 1 57 chain 19245 chr2 242193529 + 149123598 149123863 AluSc 308 + 17 283 57300 117 22 28 8 4 0 88 1 0 25 chain 2838 chr2 242193529 + 149166396 149166426 MIR 256 + 90 120 101334 30 chain 113954 chr2 242193529 + 149231345 149233094 L1PB1 5432 + 3698 5424 16554 4 0 1 134 1 3 229 0 1 36 0 1 397 4 8 87 0 6 5 2 0 11 3 0 15 0 1 106 0 1 52 16 19 24 6 35 4 0 1 200 3 5 19 48 11 24 1 0 9 16 11 9 2 0 53 2 1 16 5 4 14 10 5 11 1 0 10 1 0 15 3 0 7 16 8 15 36 31 13 1 0 22 0 3 9 1 0 16 1 0 4 chain 40749 chr2 242193529 + 149233386 149234015 L1PB2 3958 + 3217 3836 34122 15 0 1 76 2 0 12 1 8 34 1 0 5 11 6 54 9 10 10 2 0 3 2 0 94 4 2 70 1 0 62 1 0 74 2 0 21 5 4 58 chain 36293 chr2 242193529 + 149240138 149240607 LTR15 485 + 0 474 37217 107 0 1 38 10 12 118 0 4 157 1 0 5 2 0 16 0 1 15 chain 3289 chr2 242193529 + 149241171 149241207 L1PB2 3958 + 3577 3613 97114 36 chain 3436 chr2 242193529 + 149241207 149241251 L1PB2 3958 + 3625 3669 95768 44 chain 5671 chr2 242193529 + 149241575 149241641 L1PB2 3958 + 3682 3748 82466 66 chain 2958 chr2 242193529 + 149241695 149241729 L1PB2 3958 + 3804 3838 100292 34 chain 88156 chr2 242193529 + 149283697 149284685 L1PA4 6152 + 5163 6151 20019 988 chain 8397 chr2 242193529 + 149318284 149318406 HERVK14-int 1672 + 9 129 73909 17 9 8 7 1 0 88 chain 5263 chr2 242193529 + 149321870 149321933 HERVK14-int 1672 + 1603 1665 84376 56 1 0 6 chain 27305 chr2 242193529 + 149324520 149324851 LTR14A 344 + 0 344 45820 105 0 2 59 0 8 35 1 0 57 0 4 74 chain 10030 chr2 242193529 + 149402009 149402132 L1PA8 5853 + 5726 5847 70353 16 1 0 18 1 0 87 chain 195276 chr2 242193529 + 149517496 149520237 L1PB1 5432 + 2888 5418 9874 832 0 6 202 0 1 700 12 1 78 3 0 94 1 2 47 0 1 24 0 1 133 2 0 5 0 2 86 174 2 9 4 0 16 5 4 13 17 12 8 2 0 53 2 1 16 1 0 44 1 0 11 8 5 14 9 0 16 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 14 chain 19328 chr2 242193529 + 149600127 149600469 L1PA15 4387 + 4033 4357 57207 71 2 1 26 11 10 44 1 0 21 4 0 10 2 1 46 10 7 44 3 1 12 7 2 28 chain 30580 chr2 242193529 + 149648052 149648425 L1P3 4156 + 3627 4001 41489 198 0 1 175 chain 35383 chr2 242193529 + 149685126 149685652 L1MA2 4263 + 3585 4106 37778 77 1 0 124 15 17 6 3 0 95 0 1 19 1 6 25 1 0 11 7 6 86 7 0 48 chain 143697 chr2 242193529 + 149753501 149755218 L1PA7 6471 + 4762 6457 12791 254 35 5 422 0 1 175 0 6 617 0 1 214 chain 4054 chr2 242193529 + 149808526 149808585 MER53 195 - 21 84 91056 36 1 4 11 0 1 11 chain 544367 chr2 242193529 + 149850457 149856466 L1PA2 6032 + 0 6031 1062 40 1 14 17 1 2 183 1 0 702 1 0 1306 0 4 301 1 0 3315 0 7 140 chain 181930 chr2 242193529 + 149864561 149866808 L1PA7 6471 + 4222 6467 10500 445 4 8 143 0 4 265 0 3 356 1 0 4 0 1 169 1 4 135 31 0 133 0 4 69 1 2 323 0 1 24 0 9 143 chain 79281 chr2 242193529 + 149879490 149880381 L1PA4 6152 + 3918 4811 21787 168 0 3 247 1 0 475 chain 230815 chr2 242193529 + 149910910 149913815 L1PA8 5853 + 2955 5853 8726 36 0 1 212 24 9 482 0 6 188 0 1 299 0 2 499 0 1 135 1 10 170 0 2 86 0 1 41 12 2 401 0 1 26 1 0 42 2 0 67 7 6 9 1 0 13 0 1 36 2 1 19 4 3 90 chain 13069 chr2 242193529 + 149930552 149930785 L1MA5A 2387 + 2108 2306 64986 43 9 7 29 1 0 30 3 0 13 28 0 66 1 0 10 chain 557510 chr2 242193529 + 149945265 149951292 L1PA2 6032 + 1 6029 271 255 1 0 1109 0 1 1575 0 1 3087 chain 25621 chr2 242193529 + 149958874 149959192 MLT2A1 477 + 0 322 48282 17 0 4 5 0 1 142 4 1 12 0 1 21 0 1 117 chain 533865 chr2 242193529 + 149965733 149971860 L1PA4 6152 + 0 6143 1664 601 0 1 321 0 1 519 3 12 120 0 1 1648 0 1 600 1 2 424 0 1 102 0 4 12 0 1 1744 4 0 28 chain 454316 chr2 242193529 + 149977970 149984009 L1PA7 6471 + 773 6470 4280 309 32 12 29 0 1 260 2 3 65 0 1 96 0 1 238 3 8 359 0 1 332 10 12 136 1 2 703 1 0 59 0 1 137 2 0 47 0 2 63 0 4 182 1 0 173 2 0 940 1 0 149 23 1 232 0 7 78 0 1 203 13 12 49 0 4 116 319 0 330 0 1 144 0 1 141 7 0 52 chain 72525 chr2 242193529 + 150010129 150010926 L1PA4 6152 + 5201 6001 23428 155 0 3 642 chain 12893 chr2 242193529 + 150010926 150011078 L1PA4 6152 + 6002 6151 65266 144 3 0 5 chain 6239 chr2 242193529 + 150020081 150020295 MER96B 391 + 132 337 80213 23 106 92 22 1 0 10 1 7 51 chain 14368 chr2 242193529 + 150057074 150057228 AluYd8 298 + 144 298 63086 154 chain 31266 chr2 242193529 + 150112716 150113164 LTR7 482 + 0 477 40922 101 20 14 115 0 31 103 0 1 11 6 8 35 16 17 41 chain 292085 chr2 242193529 + 150113171 150116853 HERVH-int 3825 + 0 3825 7070 180 0 2 151 2 1 30 15 16 89 1 0 4 31 32 27 1 0 10 1 89 12 14 75 61 1 0 350 0 3 104 16 1 180 0 3 9 9 0 25 1 3 13 1 0 69 1 2 162 4 0 297 0 4 82 10 15 210 0 1 765 0 3 328 20 21 396 chain 23840 chr2 242193529 + 150118109 150118552 LTR7 482 + 0 470 51038 57 14 14 15 56 0 15 16 66 58 5 36 104 1 2 52 17 18 33 chain 481968 chr2 242193529 + 150192352 150198604 L1PA7 6471 + 475 6465 3587 231 11 12 132 0 1 15 0 2 133 0 1 4 8 7 238 1 0 18 11 12 115 1 4 507 0 1 127 1 0 291 4 5 13 1 0 175 0 2 365 0 4 273 2 0 70 0 1 98 0 1 69 0 1 100 1 0 69 1 5 30 1 2 392 3 0 5 0 3 509 1 3 36 291 0 432 1 2 427 1 2 87 0 3 59 0 1 32 0 4 15 1 0 45 0 1 31 0 2 759 3 0 6 chain 68320 chr2 242193529 + 150316853 150317616 L1PA3long 6157 + 5392 6157 24381 108 0 1 506 0 1 149 chain 9151 chr2 242193529 + 150391257 150391471 Tigger3a 397 + 54 327 72232 21 15 64 36 5 15 41 1 42 9 41 0 45 chain 120090 chr2 242193529 + 150435053 150436610 THE1B-int 1605 + 0 1600 15526 113 0 3 166 0 2 29 0 1 80 1 2 34 0 25 326 13 18 431 27 33 337 chain 34180 chr2 242193529 + 150461850 150462323 MLT2A1 477 + 0 477 38577 141 3 4 27 0 4 34 4 2 116 1 0 17 0 6 44 3 0 63 1 0 19 chain 111212 chr2 242193529 + 150522919 150524345 THE1C-int 1605 + 16 1592 16914 35 9 12 60 0 1 108 0 1 134 0 1 72 5 12 273 9 18 353 0 128 368 chain 2998 chr2 242193529 + 150537154 150537187 L1MA4 2864 + 2527 2560 99844 33 chain 296103 chr2 242193529 + 150667325 150671485 L1PB1 5432 + 1125 5424 6949 104 1 3 171 2 0 5 6 7 191 0 1 238 0 1 96 0 180 50 4 7 316 1 2 93 1 0 78 2 0 158 0 1 11 10 9 44 1 3 342 1 0 6 0 1 36 4 6 38 11 75 323 47 16 98 0 5 72 5 6 4 1 0 34 0 1 615 8 9 47 3 0 85 0 1 389 1 2 7 1 0 2 84 0 24 1 0 4 8 7 7 2 0 3 2 0 8 2 0 53 21 19 42 1 0 13 45 57 19 1 0 21 1 0 13 1 0 16 1 0 4 chain 296991 chr2 242193529 + 150792509 150796538 L1PA8A 6298 + 30 6291 6924 26 1 0 11 11 6 7 5 0 19 3 0 7 42 24 18 1 0 9 15 13 6 1 0 13 2 0 15 7 4 10 6 5 6 1 0 6 1 0 8 2 1 13 5 1 8 2 0 33 10 9 20 14 4 76 2 0 23 23 20 64 5 4 168 8 7 130 15 15 172 6 2309 52 6 5 170 8 9 322 5 6 246 0 1 40 4 0 571 1 2 740 2 0 72 12 14 620 1 0 101 chain 14016 chr2 242193529 + 150860704 150861008 THE1B 368 + 0 306 63572 78 12 7 23 14 15 32 61 59 12 0 15 11 7 0 54 chain 32619 chr2 242193529 + 150881553 150881983 MER57A1 433 + 0 433 39847 261 20 23 149 chain 7151 chr2 242193529 + 150928365 150928717 L1MA7 2200 + 1874 2172 77096 67 10 8 28 217 166 15 1 0 14 chain 257861 chr2 242193529 + 150953740 150962721 HERVH-int 3825 + 0 3825 8029 333 2 1 76 59 177 17 22 166 10 1 0 7 1 13 337 52 55 44 16 1 22 3 11 160 24 0 97 23 21 54 0 1 4 1 0 81 0 27 693 0 1 5 5 4 196 1 2 46 0 1 352 5430 0 77 0 3 730 chain 42457 chr2 242193529 + 150956486 150957086 HERVH-int 3825 + 3016 3825 33089 168 19 2 57 29 28 27 1 0 117 0 227 100 0 1 82 chain 5242 chr2 242193529 + 150960368 150960429 HERVH-int 3825 + 1625 1686 84493 61 chain 15035 chr2 242193529 + 150960596 150960810 HERVH-int 3825 + 1857 2075 62220 88 0 4 126 chain 66466 chr2 242193529 + 150960811 150961701 HERVH-int 3825 + 2077 2968 24835 371 0 1 351 0 35 10 39 4 119 chain 21490 chr2 242193529 + 150962930 150963223 L1PA8 5853 + 5564 5853 54519 46 4 2 38 0 2 28 1 0 6 5 4 53 1 0 17 1 0 93 chain 20024 chr2 242193529 + 151035030 151035305 L1PB4 2604 + 2295 2570 56358 88 8 6 109 0 3 51 1 0 18 chain 25840 chr2 242193529 + 151046575 151046847 AluYa5 310 + 38 310 47955 272 chain 36637 chr2 242193529 + 151082028 151082457 L1PA7 6471 + 6041 6470 36990 429 chain 10004 chr2 242193529 + 151095043 151095167 LTR44 473 + 340 464 70416 124 chain 25072 chr2 242193529 + 151104683 151105023 L1PA8 5853 + 5520 5853 49164 44 1 0 44 2 0 70 2 1 10 1 0 51 2 1 19 1 0 93 chain 6720 chr2 242193529 + 151106094 151106218 MER20 218 + 47 183 78569 31 33 45 60 chain 11476 chr2 242193529 + 151149707 151149849 BC200 147 + 0 138 67778 132 4 0 6 chain 28301 chr2 242193529 + 151154998 151155437 L1PB2 3958 + 3410 3838 44411 29 17 12 94 4 2 39 3 0 16 1 2 13 1 0 58 8 7 93 1 0 4 0 1 58 chain 2847 chr2 242193529 + 151202139 151202169 MLT2B4 540 + 504 534 101266 30 chain 7137 chr2 242193529 + 151246538 151246643 LTR72B 493 + 0 103 77143 28 11 9 66 chain 12833 chr2 242193529 + 151264512 151264661 LTR3B 427 + 6 155 65388 149 chain 4688 chr2 242193529 + 151284248 151284305 Charlie4a 502 + 363 420 87340 57 chain 115037 chr2 242193529 + 151295826 151297378 LTR12C 1709 + 0 1708 16387 98 11 10 85 0 1 78 12 22 44 0 43 83 5 4 59 0 1 92 0 13 86 0 118 246 0 4 21 1 0 8 4 2 85 26 7 14 11 4 13 3 1 370 14 13 83 chain 24989 chr2 242193529 + 151309067 151309468 LTR7B 505 + 0 491 49301 89 0 3 14 0 11 44 55 132 69 1 0 36 0 1 42 14 13 37 chain 256230 chr2 242193529 + 151309557 151313089 HERVH-int 3825 + 78 3825 8083 255 1 0 62 26 25 24 91 322 15 2 0 6 3 8 376 1 4 44 6 0 4 7 0 86 0 2 112 1 0 8 9 0 133 11 6 209 0 1 56 0 7 122 8 14 318 0 1 90 24 23 19 4 7 6 3 0 300 0 1 56 11 0 216 1 0 76 0 3 148 32 31 17 6 7 527 chain 28248 chr2 242193529 + 151314798 151315211 LTR7B 505 + 0 491 44488 89 0 3 15 0 11 57 15 77 26 0 2 85 1 0 33 0 1 10 1 2 30 14 13 37 chain 416483 chr2 242193529 + 151316065 151322429 L1PB1 5432 + 12 5422 4933 7 1 0 231 2 4 300 629 0 58 0 1 4 1 0 272 0 4 335 0 2 124 16 17 32 26 34 269 0 2 236 5 10 542 5 0 330 2 1 13 6 7 211 0 1 233 2 1 344 0 2 63 19 24 6 2 0 172 4 0 57 5 6 252 4 8 134 314 0 200 3 1 107 1 0 136 0 1 297 1 0 12 1 0 23 1 0 9 1 0 6 10 6 8 2 0 50 21 19 45 1 0 11 9 6 11 9 0 18 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 chain 26284 chr2 242193529 + 151386469 151386773 AluY 311 + 6 311 47298 120 0 1 184 chain 14378 chr2 242193529 + 151417519 151419962 MER2 342 + 22 342 63066 26 25 34 30 2 0 134 2165 19 12 8 24 41 chain 4555 chr2 242193529 + 151502081 151502134 L1PB1 5432 + 5167 5220 88041 53 chain 10079 chr2 242193529 + 151502136 151502336 L1PB1 5432 + 5221 5404 70237 16 1 0 44 1 0 15 24 12 5 1 0 14 8 5 14 2 0 27 1 0 18 0 4 9 chain 12305 chr2 242193529 + 151554701 151554899 Tigger3a 397 + 139 373 66285 9 0 10 107 0 30 38 25 21 19 chain 280020 chr2 242193529 + 151556576 151559942 L1PA7 6471 + 2671 6462 7421 201 12 13 37 0 1 13 0 344 217 1 0 1164 5 9 287 0 66 424 5 15 159 1 0 517 0 1 323 chain 3886 chr2 242193529 + 151681997 151682047 MADE1 96 + 45 96 92243 24 0 1 26 chain 5943 chr2 242193529 + 151736549 151736620 MLT1A0 366 + 93 164 81311 71 chain 529211 chr2 242193529 + 151743367 151749492 L1PA5 6144 + 0 6144 1870 127 1 15 14 0 12 1002 9 0 64 0 1 1078 2 1 1091 7 8 89 0 1 960 0 1 831 1 0 849 chain 81131 chr2 242193529 + 151778286 151779246 L1PA7 6471 + 5504 6470 21403 110 0 3 37 0 4 313 6 1 29 0 2 320 0 1 134 0 1 11 chain 28020 chr2 242193529 + 151780463 151780754 AluYd8 298 + 0 291 44832 291 chain 3352 chr2 242193529 + 151888873 151889087 MER3 215 + 0 206 96572 22 2 0 13 29 140 12 117 0 19 chain 4195 chr2 242193529 + 151933133 151933218 MADE1 96 + 0 96 90161 33 11 22 41 chain 80778 chr2 242193529 + 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60699 177 chain 4233 chr2 242193529 + 156422195 156422300 U13_ 108 + 2 106 89920 43 41 40 21 chain 24294 chr2 242193529 + 156459404 156459709 AluSc5 308 + 0 302 50338 107 9 6 189 chain 62811 chr2 242193529 + 156644757 156645546 LTR17 781 + 0 781 25678 303 10 0 23 0 1 431 10 11 12 chain 3537 chr2 242193529 + 156677014 156677113 MER3 215 + 55 178 94959 27 1 7 14 18 37 14 7 6 18 chain 13069 chr2 242193529 + 156752842 156753035 MER107 203 + 4 203 64987 94 1 0 33 2 3 17 13 19 33 chain 8521 chr2 242193529 + 156759247 156759818 L1PREC2 3366 + 2813 3249 73638 37 1 0 3 3 0 14 52 39 10 8 6 29 4 1 11 22 8 24 0 1 10 6 4 15 246 171 19 8 3 8 4 0 15 14 0 8 chain 10469 chr2 242193529 + 156761486 156761713 THE1B 368 + 138 368 69469 38 0 2 6 57 59 63 17 16 46 chain 84109 chr2 242193529 + 156761713 156762986 L1PB1 5432 + 4121 5398 20778 32 5 6 59 0 20 30 0 1 215 6 11 71 11 5 50 1 0 7 4 0 22 0 1 6 0 4 140 8 0 313 1 0 19 2 1 8 3 2 12 2 0 3 2 0 9 2 0 52 18 16 44 1 0 16 1 0 4 2 0 13 33 41 16 1 0 22 1 0 6 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4117 4804 25421 687 chain 210823 chr2 242193529 + 157562368 157565123 L1PA8 5853 + 3126 5853 9324 91 64 2 17 0 26 192 4 0 8 0 6 439 0 2 242 3 5 458 0 1 247 0 1 143 1 6 80 1 2 75 8 11 383 2 1 46 2 0 12 1 0 48 2 1 11 1 0 6 1 0 52 2 1 19 1 0 93 chain 563678 chr2 242193529 + 157566353 157572377 L1HS 6032 + 6 6030 120 478 5 0 1241 0 5 4300 chain 45405 chr2 242193529 + 157589525 157590176 L1PB3 3668 + 2191 2846 31362 123 0 4 24 1 2 110 6 0 213 2 3 87 30 34 55 chain 45239 chr2 242193529 + 157622228 157622891 L1MA1 4479 + 3487 4142 31455 33 2 0 61 1 0 134 1 0 21 1 0 4 1 0 15 1 0 71 2 1 18 2 0 13 5 1 18 1 14 54 14 10 119 5 4 29 2 0 35 chain 45139 chr2 242193529 + 157645584 157646084 L1PA3long 6157 + 5652 6152 31499 500 chain 34413 chr2 242193529 + 157654418 157654908 MLT2A1 477 + 0 477 38420 168 5 2 210 46 35 5 0 1 56 chain 62209 chr2 242193529 + 157660006 157661120 L1PA8 5853 + 5062 5853 25813 120 319 0 382 1 0 47 2 0 26 0 3 42 1 0 5 11 10 43 2 1 19 2 1 92 chain 28042 chr2 242193529 + 157677571 157677908 L1PA5 6144 + 5791 6128 44796 196 12 12 129 chain 536847 chr2 242193529 + 157704187 157710617 L1PA7 6471 + 7 6467 1514 254 4 3 138 5 6 211 10 7 75 1 0 188 26 48 605 0 1 286 0 1 337 0 1 351 0 2 104 24 7 498 0 6 367 1 0 1446 1 0 77 0 26 569 1 0 700 3 1 132 3 0 13 chain 11609 chr2 242193529 + 157730051 157730183 L1PA7 6471 + 4718 4850 67556 132 chain 62956 chr2 242193529 + 157730183 157730950 L1PA7 6471 + 4854 5621 25642 268 16 16 483 chain 55203 chr2 242193529 + 157730957 157731586 L1PA7 6471 + 5634 6265 27806 64 0 2 565 chain 16893 chr2 242193529 + 157731595 157731794 L1PA7 6471 + 6272 6470 59921 186 1 0 12 chain 22037 chr2 242193529 + 157734042 157734412 THE1C 375 + 0 375 53788 9 0 5 26 19 15 51 33 37 34 0 3 14 10 4 6 0 3 168 chain 346688 chr2 242193529 + 157752026 157756935 L1PB1 5432 + 22 5103 5955 130 22 22 88 13 10 172 3 0 117 0 520 204 1 0 105 20 13 40 1 0 164 1 0 7 0 1 100 0 1 25 299 0 164 0 3 437 1 0 147 0 2 326 1 0 13 3 1 530 6 5 357 64 13 431 1 0 47 6 7 129 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chain 39451 chr2 242193529 + 158145258 158145734 LTR10F 562 + 0 562 35042 145 0 87 62 1 0 268 chain 402484 chr2 242193529 + 158145734 158151523 L1PB1 5432 + 75 5418 5126 28 4 6 20 1 3 271 2 1 384 2 0 191 0 3 14 0 2 161 0 4 246 14 6 270 0 1 15 0 1 539 310 0 180 5 0 68 0 3 79 1 0 249 2 1 21 1 0 661 13 24 69 8 7 16 18 27 83 1 7 125 0 1 68 0 3 291 9 7 78 0 1 193 0 1 78 0 2 30 11 7 86 0 1 95 24 38 233 1 0 4 0 4 12 159 14 9 3 0 21 1 0 9 20 15 6 2 0 51 3 2 16 1 0 43 1 0 16 25 12 19 8 5 14 2 0 26 1 0 19 1 0 13 1 0 14 chain 61481 chr2 242193529 + 158154652 158155912 L1M1 2793 + 492 1617 25990 7 1 0 10 1 0 11 224 141 33 118 82 14 20 19 22 2 0 8 1 0 45 19 16 103 1 0 177 1 0 26 1 5 58 7 0 84 2 1 30 4 3 230 chain 92114 chr2 242193529 + 158209555 158210661 L1P2 5180 + 1733 2846 19321 128 0 1 188 0 2 734 0 4 56 chain 17887 chr2 242193529 + 158210981 158211195 L1PA7 6471 + 6256 6470 58776 214 chain 481848 chr2 242193529 + 158222832 158228337 L1PA4 6152 + 1 5520 3589 527 4 0 23 0 1 660 0 1 146 0 5 80 1 0 256 0 11 90 0 1 517 1 0 846 0 1 2354 chain 94199 chr2 242193529 + 158260234 158261611 L1PA14 3548 + 2148 3484 19017 163 0 1 38 1 0 159 3 0 26 2 1 152 1 0 225 0 1 24 3 1 14 2 0 30 4 0 15 2 0 7 2 0 104 13 9 13 2 0 6 6 5 79 1 0 111 4 3 6 4 0 31 34 30 13 2 1 42 6 0 7 1 0 19 chain 547446 chr2 242193529 + 158278138 158284285 L1PA3long 6157 + 1 6157 897 1189 0 3 342 1 0 4 0 1 1707 0 1 2052 2 0 5 0 6 703 0 1 142 chain 74504 chr2 242193529 + 158295106 158295944 L1P1 4361 + 3364 4201 22960 786 1 0 51 chain 41751 chr2 242193529 + 158306376 158306838 L1PA5 6144 + 5682 6144 33516 462 chain 20326 chr2 242193529 + 158312339 158312609 AluSc 308 + 38 308 55978 225 10 12 23 2 0 10 chain 550238 chr2 242193529 + 158351231 158357242 L1PA2 6032 + 10 6032 724 238 0 9 5599 0 2 174 chain 518557 chr2 242193529 + 158359385 158365813 L1PA7 6471 + 1 6467 2337 191 10 9 77 1 0 85 6 15 32 0 2 178 36 35 275 34 39 133 1 0 449 0 1 39 11 12 488 1 2 325 9 16 83 3 2 151 11 0 15 1 2 47 0 4 181 5 9 192 8 12 252 2 0 195 0 4 260 0 4 12 1 0 428 0 1 413 0 4 526 1 0 413 0 4 82 0 2 765 chain 356996 chr2 242193529 + 158397230 158401604 L1PA6 6164 + 1601 6067 5834 7 1 0 350 1 0 216 5 4 139 22 27 688 0 3 494 0 1 49 0 1 114 3 0 7 0 2 29 10 9 222 1 0 42 0 3 252 0 72 21 13 17 134 9 0 404 0 1 405 0 8 390 0 1 227 0 6 46 28 30 21 1 0 14 0 1 9 chain 51591 chr2 242193529 + 158409120 158409756 THE1B-int 1605 + 964 1600 28996 636 chain 18296 chr2 242193529 + 158409761 158410110 THE1B 368 + 0 368 58365 15 2 0 32 0 1 63 0 3 5 2 0 50 43 45 14 13 21 50 21 30 39 chain 394023 chr2 242193529 + 158420144 158424727 L1PA5 6144 + 1525 6144 5248 165 3 14 489 0 2 118 3 1 1187 0 1 198 19 20 39 1 4 114 1 2 458 0 4 459 1 15 72 0 1 406 1 0 78 0 1 771 chain 62936 chr2 242193529 + 158428572 158429298 L1PA5 6144 + 5420 6142 25646 715 4 0 7 chain 521312 chr2 242193529 + 158433508 158439624 L1PA5 6144 + 0 6132 2213 121 0 14 70 5 6 257 20 23 438 1 0 98 4 6 136 9 0 954 0 1 774 0 1 271 1 0 76 0 1 1094 0 4 1787 chain 558043 chr2 242193529 + 158522617 158528649 L1PA2 6032 + 0 6032 244 736 1 0 5150 0 1 145 chain 3400 chr2 242193529 + 158551926 158552289 MLT1D 503 + 0 394 96063 19 98 102 30 193 220 23 chain 22414 chr2 242193529 + 158704744 158705156 THE1C 375 + 0 355 53251 15 2 0 70 0 1 17 67 14 69 8 9 33 4 6 13 3 0 2 3 0 106 chain 2507 chr2 242193529 + 158739165 158739210 L1PB3 3668 + 3507 3550 103612 21 6 4 18 chain 9078 chr2 242193529 + 158742476 158742596 MER50 708 + 563 681 72382 40 1 2 56 3 0 20 chain 3675 chr2 242193529 + 158747541 158747587 MER103C 291 + 123 172 93783 6 0 3 40 chain 9639 chr2 242193529 + 158758283 158758603 MLT1B 390 + 65 390 71184 18 66 65 20 107 113 109 chain 17021 chr2 242193529 + 158833593 158833799 AluSp 311 + 60 266 59783 206 chain 12122 chr2 242193529 + 158839235 158839530 MER50 708 + 441 679 66625 43 130 73 122 chain 200976 chr2 242193529 + 158846949 158849244 HERVE-int 4064 + 1760 4064 9686 446 5 4 629 0 1 557 0 10 70 1 0 587 chain 346978 chr2 242193529 + 158866184 158870242 HERVE-int 4064 + 0 4064 5950 134 6 7 466 0 1 185 21 18 28 2 0 515 0 2 177 1 2 675 3 0 1186 0 10 71 1 0 587 chain 345752 chr2 242193529 + 158882187 158886242 HERVE-int 4064 + 0 4064 5971 473 49 49 85 0 1 203 3 0 232 0 15 465 36 11 279 1 13 327 2 1 869 0 13 369 2 0 72 1 0 587 chain 8665 chr2 242193529 + 158943090 158943194 Tigger1 2417 + 2252 2359 73310 29 0 3 75 chain 11424 chr2 242193529 + 159017719 159017873 L1PA8 5853 + 5701 5853 67873 37 11 10 12 1 0 93 chain 12770 chr2 242193529 + 159024786 159024976 Tigger3c 601 + 330 536 65488 44 1 0 101 12 29 32 chain 30171 chr2 242193529 + 159047417 159047845 MER4A1 472 + 1 461 41873 13 0 2 5 0 1 18 1 0 6 1 2 136 12 16 26 6 27 184 0 4 20 chain 14788 chr2 242193529 + 159088579 159088796 MER30 238 + 0 238 62543 108 5 0 6 20 46 78 chain 4238 chr2 242193529 + 159302162 159302213 L1MB3 1562 + 1361 1414 89895 35 0 2 16 chain 119638 chr2 242193529 + 159303955 159305620 L1PA10 4194 + 1480 3193 15586 40 0 1 91 1 0 28 6 8 12 8 8 26 8 10 5 2 0 50 2 0 6 10 12 238 6 10 99 2 0 98 0 4 69 0 1 156 0 24 147 0 1 45 7 16 12 0 3 234 15 18 177 1 0 64 chain 141146 chr2 242193529 + 159313364 159315019 L1PA7 6471 + 4788 6464 13018 486 0 12 335 1 4 70 3 5 99 0 4 661 chain 20822 chr2 242193529 + 159321305 159321609 L1MA2 4263 + 3809 4102 55333 54 1 0 95 1 0 6 2 1 93 8 1 16 1 0 27 chain 17097 chr2 242193529 + 159342086 159342363 L1PREC2 3366 + 2481 2762 59699 53 13 14 26 5 9 9 0 1 129 1 2 4 1 0 24 2 0 10 chain 14198 chr2 242193529 + 159344063 159344232 L1MA5A 2387 + 1746 1915 63323 169 chain 530437 chr2 242193529 + 159355694 159362101 L1PA7 6471 + 3 6455 1809 146 0 1 253 0 1 204 8 7 220 10 24 288 1 2 9 1 0 55 0 4 356 0 1 106 0 4 251 0 7 420 0 2 273 4 6 291 0 1 232 0 1 132 6 10 89 0 1 297 0 1 269 7 5 25 0 3 606 0 2 216 0 1 25 0 1 76 0 4 24 1 0 30 8 7 952 4 0 370 11 10 131 chain 36944 chr2 242193529 + 159369914 159370324 L1PA5 6144 + 5728 6138 36777 410 chain 3087 chr2 242193529 + 159484046 159484120 MER20 218 + 58 134 98894 24 27 29 23 chain 28918 chr2 242193529 + 159491438 159491746 AluYa5 310 + 0 307 43455 132 1 0 175 chain 25276 chr2 242193529 + 159496511 159496812 AluSp 311 + 9 311 48825 15 0 1 17 0 1 134 1 0 134 chain 15714 chr2 242193529 + 159528919 159529123 L1PA5 6144 + 5942 6142 61392 39 17 15 139 2 0 7 chain 8284 chr2 242193529 + 159563513 159563648 L1MB3 1562 + 1283 1415 74203 32 10 8 28 3 2 62 chain 304241 chr2 242193529 + 159578499 159582073 L1PA5 6144 + 2554 6138 6735 218 0 1 242 1 3 140 1 0 127 9 7 4 0 1 333 0 2 50 1 0 80 0 6 570 9 13 414 8 7 522 16 12 676 0 3 153 chain 485515 chr2 242193529 + 159623958 159629834 L1PA7 6471 + 563 6470 3519 318 0 3 290 0 10 47 0 4 366 0 3 282 0 3 563 7 10 179 3 0 274 0 3 132 0 3 140 0 6 666 3 0 81 0 4 49 1 0 1125 5 0 8 5 10 321 0 1 180 7 2 824 chain 79004 chr2 242193529 + 159664949 159665790 L1HS 6032 + 4115 4956 21870 841 chain 22217 chr2 242193529 + 159820195 159820670 L1PB1 5432 + 4983 5422 53527 120 9 2 9 3 0 24 1 0 6 1 0 13 19 13 50 2 1 11 2 4 35 0 1 9 66 51 14 3 1 23 8 7 16 1 0 10 2 1 18 chain 514521 chr2 242193529 + 159821745 159828112 L1PA7 6471 + 5 6466 2543 238 0 1 8 0 7 154 3 0 60 1 0 98 3 0 150 27 32 28 0 1 5 1 0 26 14 83 6 4 0 258 13 15 35 0 4 39 0 19 1076 0 1 140 1 0 13 0 1 44 14 1 93 11 6 242 0 4 205 0 6 101 0 1 278 0 2 5 4 1 36 0 1 752 0 3 997 2 0 340 1 0 17 1 2 166 0 1 226 0 1 263 1 2 167 chain 17288 chr2 242193529 + 159848190 159848544 L1PB1 5432 + 5105 5419 59475 12 6 0 21 1 0 9 1 0 11 5 1 8 2 0 53 3 1 15 1 0 41 35 20 30 8 5 14 2 0 24 1 0 16 9 8 10 1 0 15 chain 30311 chr2 242193529 + 159868938 159869306 L1PA6 6164 + 5794 6162 41748 208 15 15 145 chain 15871 chr2 242193529 + 159883109 159883293 L1PA2 6032 + 5853 6031 61198 23 6 0 155 chain 22574 chr2 242193529 + 159883948 159884285 THE1B 368 + 0 357 53011 35 5 20 65 0 1 53 1 0 24 2 0 78 14 13 17 5 13 38 chain 124700 chr2 242193529 + 159928430 159930119 L1PB1 5432 + 3739 5326 14747 223 0 1 99 0 5 561 0 1 107 1 0 270 1 0 92 90 5 13 0 1 21 1 0 6 1 0 13 5 1 10 2 0 52 2 1 15 1 0 43 2 1 16 3 0 12 9 0 18 chain 7333 chr2 242193529 + 159942228 159942414 MER58A 224 + 0 216 76561 24 68 86 23 4 16 67 chain 23820 chr2 242193529 + 159961926 159962195 L1PA7 6471 + 5352 5621 51068 269 chain 5348 chr2 242193529 + 159962196 159962257 L1PA7 6471 + 5621 5682 83963 61 chain 66119 chr2 242193529 + 159962257 159963038 L1PA7 6471 + 5683 6466 24932 570 0 1 203 0 1 8 chain 29591 chr2 242193529 + 159970780 159971111 L1PA7 6471 + 6138 6469 42491 331 chain 3576 chr2 242193529 + 159986146 159986192 Tigger4a 237 - 95 141 94617 46 chain 27919 chr2 242193529 + 160086815 160087150 L1PA6 6164 + 5832 6162 45000 324 5 0 6 chain 3029 chr2 242193529 + 160093326 160093358 MER1B 344 - 110 142 99506 32 chain 131752 chr2 242193529 + 160093383 160096097 L1MA3 4352 + 2372 4352 13850 87 7 9 117 1 0 136 1 0 4 22 20 66 5 6 86 406 0 63 17 18 7 3 0 96 1 0 142 1 0 17 296 1 63 0 4 261 0 3 122 0 1 127 0 2 58 2 0 11 0 1 45 14 19 91 6 8 29 57 27 117 4 0 22 2 0 24 8 6 21 6 4 4 0 1 10 6 2 17 1 0 5 chain 521778 chr2 242193529 + 160114516 160120680 L1HS 6032 + 0 6032 2195 256 1 0 34 40 43 63 10 13 288 0 7 64 154 10 1046 1 0 1521 0 1 2686 chain 350446 chr2 242193529 + 160133114 160137057 L1PA4 6152 + 2187 6152 5905 61 0 1 134 1 5 186 0 4 529 0 1 769 4 5 476 0 2 944 0 4 832 0 5 7 chain 515795 chr2 242193529 + 160148479 160154581 L1PA6 6164 + 0 6153 2480 196 1 0 41 0 2 279 0 2 47 1 0 223 0 17 145 0 1 534 0 1 4 2 1 736 5 8 88 0 1 229 0 11 7 4 3 594 1 0 25 4 5 592 1 0 159 0 1 526 0 11 828 0 6 830 chain 541222 chr2 242193529 + 160180707 160187127 L1PA7 6471 + 16 6467 1261 182 0 1 204 0 1 245 2 3 633 1 0 473 0 1 275 0 1 501 5 8 96 0 1 552 0 11 346 0 1 1117 0 4 102 0 3 24 0 1 212 0 1 254 0 1 341 0 3 10 4 6 170 0 1 375 1 2 136 1 0 10 1 0 137 4 0 6 chain 106326 chr2 242193529 + 160189034 160190219 L1PA4 6152 + 4821 6013 17520 1175 0 7 10 chain 11917 chr2 242193529 + 160190227 160190360 L1PA4 6152 + 6014 6152 66974 127 0 5 6 chain 5167 chr2 242193529 + 160215181 160215289 Charlie4a 502 + 121 230 84835 36 32 33 40 chain 4840 chr2 242193529 + 160235257 160235316 HSMAR2 1300 + 1216 1275 86475 59 chain 30100 chr2 242193529 + 160350992 160351341 L1PA5 6144 + 5800 6144 41946 207 1 0 129 4 0 8 chain 5042 chr2 242193529 + 160402489 160402546 MER53 195 + 108 165 85458 57 chain 132584 chr2 242193529 + 160448310 160449838 SVA_B 1603 + 13 1599 13770 11 1 25 825 25 27 19 4 0 46 0 36 597 chain 2613 chr2 242193529 + 160530504 160530550 Tigger2 2703 + 2393 2440 102919 12 5 6 29 chain 42435 chr2 242193529 + 160557203 160557918 L1PA14 3548 + 2780 3485 33106 158 3 1 14 2 0 47 2 0 5 2 0 105 2 0 5 5 3 13 2 0 6 1 0 84 1 0 35 11 20 55 1 0 12 6 2 17 5 17 14 1 0 5 1 0 11 16 15 32 5 0 3 1 0 7 1 0 19 chain 43298 chr2 242193529 + 160572755 160573300 MLT2A2 560 + 0 560 32573 140 0 1 53 1 4 204 0 11 147 chain 4526 chr2 242193529 + 160622804 160622856 L1PA7 6471 + 6255 6307 88180 52 chain 12953 chr2 242193529 + 160622856 160623014 L1PA7 6471 + 6308 6466 65173 158 chain 133817 chr2 242193529 + 160712846 160714302 L1PA2 6032 + 4566 6023 13671 1320 0 1 136 chain 440137 chr2 242193529 + 160766499 160771520 L1PA4 6152 + 0 5051 4576 445 0 13 17 0 4 550 5 2 678 0 1 590 23 8 4 1 0 74 0 4 296 0 1 148 0 4 411 9 31 879 4 0 193 1 5 693 chain 12159 chr2 242193529 + 160795794 160795971 Tigger1 2417 + 871 1071 66552 74 1 0 60 12 36 30 chain 26377 chr2 242193529 + 160795982 160796314 L1PA6 6164 + 5823 6161 47153 101 0 1 180 1 5 25 0 1 25 chain 10414 chr2 242193529 + 160796392 160796611 L1MA3 4352 + 4134 4352 69584 45 1 0 23 0 2 11 1 5 9 9 6 26 2 0 21 2 1 5 1 0 18 24 25 21 chain 554406 chr2 242193529 + 160797332 160803466 L1PA3long 6157 + 6 6142 454 119 2 0 581 0 1 1990 2 1 1973 1 0 632 1 5 515 0 1 179 7 0 9 4 11 119 chain 58518 chr2 242193529 + 160803509 160804325 Tigger1 2417 + 1465 2288 26810 92 0 3 442 0 18 46 0 3 75 26 12 14 17 13 67 0 1 37 chain 5276 chr2 242193529 + 160807946 160808003 THE1D-int 1627 + 1035 1092 84307 57 chain 2799 chr2 242193529 + 160841719 160841817 L1MB3 1562 + 1458 1555 101648 17 53 52 28 chain 13401 chr2 242193529 + 160848572 160848875 L1PB1 5432 + 5117 5390 64469 21 1 0 6 1 0 13 17 12 51 2 1 7 0 1 7 1 0 7 4 3 33 2 1 14 6 3 11 9 0 18 11 6 14 2 0 25 1 0 19 chain 47329 chr2 242193529 + 160860576 160861092 L1PA2 6032 + 5305 5823 30530 495 0 2 21 chain 18507 chr2 242193529 + 160874465 160874674 AluYk4 311 + 70 279 58093 209 chain 6462 chr2 242193529 + 160893251 160893346 MER53 195 + 0 97 79476 59 7 0 9 0 9 20 chain 38120 chr2 242193529 + 160915876 160916340 L1PA8 5853 + 4004 4465 35972 199 0 4 127 7 0 131 chain 39023 chr2 242193529 + 160949474 160949900 L1PA3long 6157 + 4176 4603 35340 32 0 1 394 chain 43217 chr2 242193529 + 160949900 160950381 L1PA3long 6157 + 4604 5085 32635 481 chain 96351 chr2 242193529 + 160950383 160951453 L1PA3long 6157 + 5088 6157 18728 735 0 1 184 5 3 146 chain 36744 chr2 242193529 + 160996018 160996571 Tigger3b 1229 + 639 1174 36928 131 47 39 64 4 1 140 8 2 122 1 0 36 chain 120098 chr2 242193529 + 161002169 161003665 L1P1 4361 + 2 1511 15524 325 1 0 247 1 0 118 7 0 483 0 13 201 0 9 113 chain 24848 chr2 242193529 + 161008719 161009071 THE1A 353 + 0 353 49520 66 9 10 35 1 0 24 0 1 5 1 0 59 1 0 17 1 0 96 0 3 37 chain 516125 chr2 242193529 + 161010001 161016448 L1PA7 6471 + 1 6470 2464 243 0 10 149 0 1 93 12 13 85 19 11 9 2 0 5 7 1 22 0 2 107 1 0 136 5 4 317 0 4 128 12 23 393 0 2 192 0 3 6 11 8 67 1 0 418 0 1 66 0 2 117 0 2 425 1 0 431 1 0 512 0 2 8 0 1 216 11 10 160 8 9 123 0 1 272 1 0 138 0 1 533 0 3 136 2 0 76 0 2 365 0 1 20 1 0 206 15 22 6 7 0 150 chain 10074 chr2 242193529 + 161021637 161021769 Tigger1 2417 + 54 186 70244 40 0 1 14 3 2 75 chain 161982 chr2 242193529 + 161024901 161027207 L1PA15 4387 + 1950 4258 11615 76 1 0 4 0 1 95 0 2 7 9 2 573 0 1 32 3 21 41 0 1 69 3 6 77 1 0 202 3 0 91 0 4 15 0 3 14 0 1 277 17 16 74 1 0 4 1 2 151 24 30 44 2 0 46 1 0 33 50 49 9 3 2 79 1 0 21 6 5 37 2 0 18 1 0 21 14 0 7 7 6 39 chain 7364 chr2 242193529 + 161056197 161056291 LTR10E 629 + 0 95 76496 10 0 1 84 chain 43126 chr2 242193529 + 161061215 161061763 MLT2A2 560 + 7 560 32698 75 0 1 31 6 9 195 0 1 241 chain 43261 chr2 242193529 + 161073588 161074132 L1PA8 5853 + 4004 4551 32603 192 4 5 8 1 0 5 0 2 123 0 1 211 chain 26867 chr2 242193529 + 161185583 161185870 L1PA2 6032 + 5740 6027 46448 287 chain 4481 chr2 242193529 + 161244309 161244409 MER53 195 + 5 106 88435 45 3 0 9 30 34 13 chain 510393 chr2 242193529 + 161286202 161292145 L1PA5 6144 + 0 5953 2749 120 0 14 20 12 24 126 6 10 747 0 1 103 13 4 67 0 1 1070 17 0 18 1 0 1183 0 1 173 1 0 167 4 0 659 0 1 536 0 5 244 1 4 655 chain 11458 chr2 242193529 + 161303766 161304185 MER101 471 + 7 434 67817 7 1 0 107 131 74 18 22 70 11 12 13 21 62 79 27 chain 7849 chr2 242193529 + 161350192 161350372 MER53 195 + 0 195 75257 63 9 10 24 35 44 24 10 15 15 chain 2094 chr2 242193529 + 161444060 161444148 MADE1 96 - 5 96 105813 19 31 34 38 chain 51922 chr2 242193529 + 161456698 161457297 L1PA5 6144 + 5547 6142 28900 588 4 0 7 chain 84765 chr2 242193529 + 161475157 161476395 L1PA11 4918 + 3355 4578 20668 310 45 40 34 1 2 53 0 1 101 0 1 17 0 10 386 0 4 13 6 1 56 11 10 13 2 0 67 2 0 14 1 0 16 48 35 13 4 3 12 2 0 11 chain 224949 chr2 242193529 + 161512914 161515794 L1PA7 6471 + 0 6458 8893 134 0 39 42 1 2 195 16 2 264 27 40 768 1 0 95 7 3544 112 0 1 383 1 0 27 1 2 50 0 2 271 0 1 150 7 8 92 2 0 234 chain 27606 chr2 242193529 + 161531553 161531888 L1PA2 6032 + 5699 6032 45448 175 1 8 7 7 0 130 2 0 13 chain 492690 chr2 242193529 + 161536212 161541691 L1PA3long 6157 + 29 6157 3353 65 0 526 156 0 128 258 0 3 27 10 1 3102 6 7 1855 chain 23922 chr2 242193529 + 161562384 161562752 THE1B 368 + 3 368 50909 10 2 0 27 6 11 56 13 14 22 1 2 27 2 1 26 7 0 169 chain 12619 chr2 242193529 + 161564282 161564484 L1PA11 4918 + 4313 4504 65777 15 5 0 65 2 1 9 8 6 65 2 0 13 2 1 16 chain 125153 chr2 242193529 + 161567011 161568449 L1PA5 6144 + 3371 4813 14679 670 1 2 152 0 2 85 0 1 530 chain 4146 chr2 242193529 + 161688847 161688896 Tigger3c 601 + 43 92 90484 49 chain 116712 chr2 242193529 + 161732647 161734207 THE1A-int 1579 + 45 1579 16099 61 0 2 160 1 0 186 2 3 4 1 0 33 2 1 7 0 7 161 3 4 326 0 1 74 44 7 296 0 1 39 0 1 160 chain 10041 chr2 242193529 + 161790814 161790960 L1PA11 4918 + 4361 4504 70330 114 2 0 13 1 0 16 chain 26232 chr2 242193529 + 161908312 161908596 L1PA4 6152 + 5867 6151 47374 284 chain 100100 chr2 242193529 + 161927442 161928537 L1PA3long 6157 + 5067 6157 18287 1083 5 0 7 chain 6921 chr2 242193529 + 162080144 162080238 MLT1C 463 + 356 451 77876 54 1 2 39 chain 2994 chr2 242193529 + 162235564 162235598 LTR12C 1709 + 682 716 99893 34 chain 7015 chr2 242193529 + 162255540 162255658 MER33 330 + 17 129 77551 79 1 0 4 14 9 20 chain 29945 chr2 242193529 + 162271266 162271617 L1PA5 6144 + 5793 6144 42105 351 chain 16229 chr2 242193529 + 162327932 162328118 LTR12C 1709 + 0 186 60712 186 chain 133553 chr2 242193529 + 162469714 162471262 SVA_D 2077 + 25 2077 13685 11 1 18 501 0 40 241 40 0 80 1 490 656 2 0 15 chain 148547 chr2 242193529 + 162471523 162473219 L1PA5 6144 + 4417 6132 12452 113 0 1 1244 8 26 180 1 6 4 5 0 141 chain 10660 chr2 242193529 + 162538114 162538300 MER30 238 + 0 196 69114 16 16 15 63 26 37 65 chain 39332 chr2 242193529 + 162561734 162562219 L1PA7 6471 + 5983 6466 35127 153 0 1 170 1 4 5 3 0 143 3 0 7 chain 212075 chr2 242193529 + 162570710 162573052 L1PA3long 6157 + 3809 6152 9277 482 0 1 1860 chain 133921 chr2 242193529 + 162683766 162685355 L1PA7 6471 + 4880 6470 13665 62 0 1 6 1 0 110 3 0 562 1 0 79 0 2 422 0 1 82 0 1 104 1 2 156 chain 2084 chr2 242193529 + 162687607 162687644 MER63B 433 + 342 379 105849 11 1 2 4 1 0 20 chain 123911 chr2 242193529 + 162804153 162806012 L1PB3 3668 + 1764 3595 14863 81 0 2 21 0 4 58 0 8 55 1 0 23 1 0 96 8 0 6 16 0 209 20 21 24 11 6 93 16 22 79 0 11 84 1 0 65 0 2 6 18 17 157 0 1 70 3 0 20 1 0 209 0 1 6 1 0 70 1 0 91 3 5 4 1 0 87 20 4 18 2 0 3 1 0 25 3 1 37 7 3 13 1 0 13 chain 34247 chr2 242193529 + 162856110 162856538 L1PA6 6164 + 5722 6160 38526 75 0 8 200 7 8 82 2 3 62 chain 13853 chr2 242193529 + 162859680 162859870 MER30 238 + 25 238 63792 81 5 25 65 0 3 39 chain 128860 chr2 242193529 + 162878393 162879973 L1PA7 6471 + 4784 6371 14169 181 1 0 655 3 2 685 0 1 26 0 8 29 chain 21201 chr2 242193529 + 162901748 162902012 L1PB1 5432 + 2964 3228 54880 264 chain 5302 chr2 242193529 + 162927777 162927878 Tigger3c 601 + 10 110 84192 19 27 26 55 chain 148635 chr2 242193529 + 162959933 162962004 L1PA8 5853 + 3799 5853 12446 233 0 1 182 11 9 259 0 1 6 0 1 151 24 2 286 3 4 75 0 3 347 8 9 179 18 17 43 14 12 40 41 39 42 2 1 19 4 3 24 23 29 37 chain 245506 chr2 242193529 + 162985708 162988430 L1PA4 6152 + 3427 6152 8341 1208 1 0 669 0 4 844 chain 3438 chr2 242193529 + 162996565 162996618 MLT1B 390 + 27 89 95755 25 3 12 25 chain 45306 chr2 242193529 + 163014688 163015205 MER9a1 513 + 0 513 31415 446 4 0 67 chain 117963 chr2 242193529 + 163026087 163027482 LTR12C 1709 + 0 1709 15892 153 4 0 54 1 0 370 2 1 221 3 319 106 0 4 481 chain 19386 chr2 242193529 + 163056389 163056690 L1PA8 5853 + 5559 5853 57145 5 1 0 46 2 0 67 13 11 46 8 7 19 7 6 87 chain 56913 chr2 242193529 + 163066518 163067206 LTR12_ 688 + 0 688 27294 142 1 2 369 1 0 175 chain 48005 chr2 242193529 + 163072728 163073339 LTR12_ 688 + 0 688 30296 88 1 42 16 0 24 117 0 2 151 4 15 58 1 0 175 chain 26197 chr2 242193529 + 163097582 163097938 THE1A 353 + 0 353 47428 109 2 1 9 1 0 74 6 5 155 chain 89328 chr2 242193529 + 163146537 163147675 MER61-int 3695 + 1381 2583 19794 16 0 4 198 0 1 71 0 1 33 0 57 369 0 2 112 1 0 338 chain 25183 chr2 242193529 + 163237442 163237729 L1PA7 6471 + 5688 5976 48981 112 0 1 175 chain 141973 chr2 242193529 + 163282214 163283873 L1P1 4361 + 2682 4341 12939 95 0 2 422 1 2 947 1 0 155 1 0 23 2 1 12 chain 56636 chr2 242193529 + 163450248 163450965 LTR12 884 + 0 884 27376 187 0 157 33 2 0 65 2 0 11 0 2 115 3 7 149 4 12 146 chain 48612 chr2 242193529 + 163495499 163496119 L1PA10 4194 + 3521 4141 30081 73 0 1 16 0 1 31 3 5 458 2 1 9 3 0 25 chain 201327 chr2 242193529 + 163497387 163499977 L1P3 4156 + 0 2616 9671 140 0 3 108 2 1 67 2 1 21 0 1 79 19 13 234 6 8 37 0 1 150 1 10 4 0 1 232 7 12 36 3 4 190 1 0 79 0 1 107 0 7 11 8 7 65 0 2 616 7 9 332 0 1 26 chain 314475 chr2 242193529 + 163500000 163503793 L1PA7 6471 + 2643 6413 6518 410 6 5 147 2 0 298 1 0 326 1 0 126 0 2 47 3 0 645 19 1 13 0 8 416 16 4 533 0 4 120 0 1 664 chain 37502 chr2 242193529 + 163577550 163578052 MLT2A2 560 + 0 560 36398 180 1 0 45 6 7 76 0 32 22 0 12 15 1 0 13 0 11 137 0 4 6 chain 27834 chr2 242193529 + 163661598 163661953 THE1A 353 + 0 353 45132 106 6 5 87 1 0 155 chain 54361 chr2 242193529 + 163661953 163662688 THE1A-int 1579 + 0 742 28101 106 1 4 59 2 1 5 0 7 11 6 0 143 0 2 102 0 2 76 0 4 193 4 0 27 chain 151973 chr2 242193529 + 163789225 163790941 L1PA5 6144 + 4420 6137 12230 34 0 1 839 1 0 164 0 1 678 chain 59796 chr2 242193529 + 163854170 163854847 L1PA6 6164 + 5134 5812 26432 424 0 1 253 chain 32486 chr2 242193529 + 163866387 163866967 L1PA13 3608 + 2914 3488 39956 5 0 2 52 0 3 96 55 56 13 33 32 20 0 1 4 1 0 75 2 0 60 6 5 53 1 0 5 2 0 47 2 0 5 3 1 19 1 0 20 chain 9717 chr2 242193529 + 163880603 163880844 MER33 330 + 41 284 71012 50 52 58 28 43 39 68 chain 121503 chr2 242193529 + 163909342 163914868 LTR12C 1709 + 0 1709 15264 64 23 26 285 0 5 7 5 0 74 12 13 10 7 5 84 5 4 141 1 0 119 1 0 35 5 7 62 3815 0 169 4 0 6 4 2 106 0 4 349 10 0 9 0 10 29 1 0 84 chain 2660 chr2 242193529 + 163910312 163910345 LTR12C 1709 + 1053 1086 102670 33 chain 37597 chr2 242193529 + 163910371 163910898 LTR12C 1709 + 1118 1709 36339 97 44 13 212 0 101 71 9 4 9 1 0 84 chain 54060 chr2 242193529 + 163913429 163914084 LTR12C 1709 + 0 650 28208 222 2 0 77 1 2 157 10 6 186 chain 21925 chr2 242193529 + 164088008 164088250 L1PA4 6152 + 5291 5533 53935 242 chain 178292 chr2 242193529 + 164121718 164123622 L1HS 6032 + 4127 6031 10665 1904 chain 4916 chr2 242193529 + 164136910 164136970 MER5A1 166 + 35 95 86078 60 chain 457884 chr2 242193529 + 164261253 164266510 L1PA4 6152 + 6 5517 4184 148 0 1 102 0 1 178 0 133 7 1 0 122 7 0 73 1 129 216 5 6 2234 20 12 990 0 2 182 0 3 360 1 2 610 chain 110989 chr2 242193529 + 164267346 164268912 THE1B-int 1605 + 0 1585 16938 192 14 15 216 3 28 7 1 0 5 0 1 157 16 18 28 43 38 6 1 0 62 1 2 200 0 3 95 12 4 187 5 6 315 chain 303660 chr2 242193529 + 164290539 164294180 L1PA7 6471 + 2817 6467 6752 28 1 0 65 0 1 458 0 8 49 1 2 69 1 0 1236 1 0 178 0 2 42 2 1 252 2 0 250 0 1 162 1 0 12 0 1 822 0 2 9 chain 27543 chr2 242193529 + 164295825 164296252 LTR7B 505 + 0 497 45522 56 1 0 49 0 10 60 0 38 12 3 27 26 0 2 38 2 3 41 1 0 24 9 7 47 15 14 43 chain 297085 chr2 242193529 + 164296260 164299887 HERVH-int 3825 + 0 3825 6920 216 1 8 140 1 0 169 69 0 37 1 0 10 1 0 24 1 52 41 43 0 59 0 1 6 0 2 13 0 3 216 2 1 685 8 33 298 0 13 1093 8 218 256 4 6 225 chain 2261 chr2 242193529 + 164296971 164297009 HERVH-int 3825 + 618 693 98843 1 1 0 12 3 0 5 0 41 16 chain 25806 chr2 242193529 + 164301137 164301560 LTR7B 505 + 0 497 48005 105 0 10 69 35 11 27 10 99 42 1 0 25 4 5 48 14 13 43 chain 5654 chr2 242193529 + 164401720 164401862 L1MA1 4479 + 4062 4190 82541 12 12 11 22 3 1 34 1 0 9 1 0 11 4 2 8 7 0 18 chain 24042 chr2 242193529 + 164450871 164451143 AluSc 308 + 28 300 50743 272 chain 45037 chr2 242193529 + 164459159 164459641 LTR7 482 + 0 482 31557 482 chain 291129 chr2 242193529 + 164459643 164463146 HERVH-int 3825 + 0 3816 7096 489 2 0 11 29 85 19 29 0 10 5 42 42 2 1 57 1 2 5 0 2 13 0 3 134 0 3 684 0 4 79 4 31 359 0 1 220 0 1 823 8 218 478 chain 303287 chr2 242193529 + 164516508 164521469 L1PB1 5432 + 1082 5391 6761 126 0 22 133 646 3 24 17 20 43 8 0 166 0 1 162 2 0 38 13 12 306 1 2 358 3 0 25 0 1 43 1 0 173 0 2 77 0 1 4 8 6 12 3 0 164 0 1 5 1 0 219 7 19 52 0 1 268 7 8 131 14 11 425 10 17 6 1 0 34 0 3 8 2 1 136 11 10 121 0 1 147 4 0 84 1 0 21 1 0 4 0 1 64 3 5 6 3 0 163 0 5 120 39 27 4 1 0 10 1 0 13 7 3 8 2 0 8 14 14 29 1 0 13 5 4 45 1 0 15 9 7 9 8 0 12 2 0 5 21 19 22 1 0 21 chain 26059 chr2 242193529 + 164648055 164648411 THE1B 368 + 1 368 47647 12 2 0 24 0 5 65 2 3 65 1 0 131 3 11 51 chain 29540 chr2 242193529 + 164672416 164672729 AluYb8 318 + 0 312 42562 126 1 0 186 chain 18502 chr2 242193529 + 164679688 164679934 L1PA7 6471 + 6204 6458 58099 26 0 12 55 1 2 18 5 0 141 chain 5271 chr2 242193529 + 164746311 164746376 U3 216 + 0 65 84334 65 chain 14384 chr2 242193529 + 164768316 164768521 MER30 238 + 0 234 63062 112 14 46 37 3 0 39 chain 69734 chr2 242193529 + 164866076 164866926 HERVL-int 5654 + 4767 5654 24059 422 12 40 156 0 2 157 0 1 85 0 6 18 chain 30822 chr2 242193529 + 164866926 164867311 MLT2A1 477 + 0 383 41297 168 5 2 9 0 1 203 chain 34505 chr2 242193529 + 164923835 164924349 L1PA16 3655 + 3112 3592 38347 75 15 14 90 2 0 164 1 0 123 15 0 7 15 0 7 chain 12600 chr2 242193529 + 164927029 164927351 MLT1A1 405 + 73 386 65796 28 27 27 29 84 81 22 2 0 21 7 6 94 3 0 5 chain 121229 chr2 242193529 + 164929800 164931552 L1PA13 3608 + 1751 3488 15313 81 0 4 42 4 10 9 0 1 31 4 5 18 0 1 13 0 4 42 16 17 6 1 0 273 0 1 105 6 2 574 3 6 114 0 1 18 4 7 4 1 0 19 1 0 43 27 7 31 4 1 33 2 0 60 1 0 57 8 5 48 2 0 4 2 0 18 1 0 22 chain 43869 chr2 242193529 + 164963827 164964370 MER41A 554 + 0 554 32210 365 0 2 41 0 4 15 0 1 85 0 4 37 chain 24242 chr2 242193529 + 165030467 165030851 THE1D 372 + 0 372 50431 165 30 24 13 32 20 11 0 6 133 chain 42917 chr2 242193529 + 165083083 165083711 MER4A 717 + 16 691 32825 27 0 1 208 9 21 97 0 40 9 19 0 37 2 3 162 1 2 11 4 15 42 chain 13117 chr2 242193529 + 165098512 165098699 MER107 203 + 12 203 64900 11 8 7 122 3 8 43 chain 119158 chr2 242193529 + 165132035 165133343 L1PA3long 6157 + 4400 5708 15669 1308 chain 13347 chr2 242193529 + 165152773 165152926 L1PA5 6144 + 5985 6139 64550 4 0 1 149 chain 10678 chr2 242193529 + 165160244 165160438 MER1A 529 + 333 524 69080 55 2 0 3 1 0 8 1 4 40 26 22 29 0 1 29 chain 16777 chr2 242193529 + 165258448 165258758 L1PA15 4387 + 4028 4325 60058 56 21 20 27 1 0 53 2 1 22 4 0 8 1 0 44 14 11 44 3 1 10 chain 22402 chr2 242193529 + 165264222 165264526 L1PB1 5432 + 3082 3388 53267 118 3 6 116 1 0 66 chain 4943 chr2 242193529 + 165268789 165269038 L1MA7 2200 + 1802 2025 85918 27 1 0 34 166 141 21 chain 98922 chr2 242193529 + 165346445 165347606 L1PA7 6471 + 5299 6468 18420 264 0 11 45 1 4 838 6 0 7 chain 559673 chr2 242193529 + 165485934 165491963 L1PA2 6032 + 3 6032 180 6029 chain 6122 chr2 242193529 + 165529172 165529249 THE1A-int 1579 + 1499 1574 80649 13 1 0 50 1 0 12 chain 115922 chr2 242193529 + 165531620 165532921 L1P1 4361 + 3043 4341 16253 1108 1 0 154 1 0 23 2 1 12 chain 29373 chr2 242193529 + 165590516 165590889 THE1C 375 + 0 375 42780 176 0 1 9 5 6 183 chain 9102 chr2 242193529 + 165592494 165592638 THE1C 375 + 4 151 72343 75 11 10 41 5 9 12 chain 8447 chr2 242193529 + 165592698 165592796 THE1C 375 + 213 311 73801 98 chain 8030 chr2 242193529 + 165623533 165623649 MER2 342 + 219 336 74803 73 5 6 38 chain 9412 chr2 242193529 + 165825620 165825749 MER85 139 + 0 139 71676 96 4 14 29 chain 15318 chr2 242193529 + 165967074 165967261 THE1A 353 + 167 353 61885 35 1 0 151 chain 126234 chr2 242193529 + 165967261 165968825 THE1A-int 1579 + 0 1579 14519 208 0 4 242 0 10 10 1 0 212 3 4 871 0 1 17 chain 443417 chr2 242193529 + 165972086 165977930 L1PA8 5853 + 51 5795 4508 21 2 0 10 1 0 6 79 24 193 0 4 345 14 25 5 0 2 33 2 3 297 0 2 25 0 3 500 0 4 338 14 16 9 14 0 7 9 12 82 3 1 73 0 4 307 0 3 46 0 1 16 0 1 185 0 2 61 69 8 162 2 0 17 5 4 21 5 9 209 8 4 63 15 0 154 0 2 36 1 2 252 0 4 53 8 6 106 0 1 228 1 0 138 12 11 45 0 1 230 2 1 46 0 3 397 0 4 75 0 2 74 1 7 423 1 0 49 1 0 44 2 0 39 10 9 26 1 0 5 2 1 52 2 1 19 1 0 35 chain 7781 chr2 242193529 + 165980052 165980168 MLT1A0-int 1658 + 14 125 75415 7 1 0 58 4 1 36 1 0 9 chain 220267 chr2 242193529 + 166099140 166101522 L1PA2 6032 + 3644 6032 9038 5 0 2 4 1 0 1403 0 1 123 0 4 846 chain 13837 chr2 242193529 + 166102607 166102909 L1PA15 4387 + 4073 4356 63816 30 2 1 9 9 8 9 1 0 55 1 0 19 4 0 13 1 0 39 16 13 30 16 14 11 12 7 25 chain 149876 chr2 242193529 + 166204878 166206670 L1PA6 6164 + 4371 6162 12355 272 1 0 617 1 0 733 1 0 5 21 22 9 3 4 129 chain 4704 chr2 242193529 + 166220338 166220646 MSTD 398 + 69 390 87237 22 232 244 50 0 1 4 chain 118289 chr2 242193529 + 166290754 166292204 L1PA8 5853 + 3517 4978 15835 200 0 1 4 1 0 188 0 4 243 0 3 157 1 2 15 0 2 379 0 1 262 chain 161884 chr2 242193529 + 166309493 166311259 L1PA2 6032 + 4260 6031 11619 1161 0 5 605 chain 22213 chr2 242193529 + 166398182 166398425 L1PA3long 6157 + 5913 6156 53531 243 chain 33527 chr2 242193529 + 166413575 166415095 MLT2A1 477 + 5 477 39063 137 8 9 18 1 5 150 1 0 31 7 0 30 4 0 10 10 0 20 1043 12 50 chain 76269 chr2 242193529 + 166415550 166416562 MER11A 1151 + 0 1151 22493 55 0 99 22 8 0 24 1 0 94 4 0 85 4 5 59 0 1 85 6 0 11 0 7 135 6 9 54 0 4 70 6 40 49 0 9 234 chain 9737 chr2 242193529 + 166433066 166433191 MER85 139 + 0 139 70965 85 0 1 12 0 13 28 chain 100329 chr2 242193529 + 166445756 166447035 L1PA8 5853 + 4573 5849 18258 168 0 1 259 0 6 557 1 0 32 1 2 11 2 0 14 11 7 46 7 6 8 1 0 53 1 0 17 1 0 89 chain 21229 chr2 242193529 + 166450529 166450798 AluSc 308 + 10 285 54849 67 0 6 56 9 7 5 0 2 132 chain 28052 chr2 242193529 + 166455955 166456324 L1PA7 6471 + 6076 6429 44783 38 19 1 198 0 1 6 0 1 108 chain 34249 chr2 242193529 + 166459692 166460126 L1PA7 6471 + 6025 6458 38524 35 0 1 232 7 5 20 4 5 50 1 0 85 chain 84776 chr2 242193529 + 166504133 166505057 L1PA2 6032 + 5109 6032 20666 903 1 0 20 chain 514619 chr2 242193529 + 166581224 166587372 L1PA6 6164 + 0 6162 2538 250 2 1 13 2 0 738 2 0 215 1 0 120 0 1 626 0 1 231 16 0 137 0 1 245 0 4 398 0 16 188 1 0 4 0 1 91 0 1 893 0 4 183 0 4 52 0 1 63 5 4 1345 2 3 154 0 4 82 1 2 77 2 0 9 chain 44138 chr2 242193529 + 166609116 166609683 LTR22 571 + 0 571 32056 82 1 0 70 0 1 45 0 4 50 6 0 112 0 1 19 0 3 77 4 0 8 0 4 31 0 2 62 chain 45402 chr2 242193529 + 166614456 166615037 LTR22 571 + 0 571 31364 59 7 0 23 1 0 169 10 3 78 0 3 185 0 2 49 chain 5453 chr2 242193529 + 166667678 166667777 L1PB3 3668 + 3503 3595 83443 25 3 1 33 11 7 13 1 0 13 chain 19244 chr2 242193529 + 166684013 166684254 Tigger3c 601 + 306 546 57302 79 1 0 161 chain 514300 chr2 242193529 + 166685835 166691937 L1PA5 6144 + 0 6144 2554 13 5 18 63 2 0 35 1 15 315 1 0 352 0 17 8 9 0 202 0 1 6 0 1 125 14 5 527 0 1 313 2 1 461 0 4 8 0 1 1185 11 8 455 5 9 807 0 7 1053 3 6 44 0 3 68 2 0 7 chain 38083 chr2 242193529 + 166766777 166767232 LTR2 463 + 0 463 36005 60 0 4 63 0 3 24 0 1 308 chain 35566 chr2 242193529 + 166771868 166772329 MER4A1 472 + 5 472 37675 268 5 6 156 0 1 4 6 10 22 chain 551150 chr2 242193529 + 166853722 166859864 L1PA3long 6157 + 19 6157 663 1661 0 6 1828 1 2 918 0 1 875 0 4 836 16 0 7 chain 4591 chr2 242193529 + 166871652 166871706 MLT1E1 597 + 514 568 87837 54 chain 566632 chr2 242193529 + 166988454 166994490 L1HS 6032 + 3 6032 48 708 7 0 5321 chain 151021 chr2 242193529 + 167031514 167033440 L1PA7 6471 + 4516 6461 12289 22 0 2 134 0 2 259 0 1 4 11 10 357 0 5 309 0 3 69 0 1 32 0 1 396 3 6 20 4 5 143 1 2 9 14 14 6 1 0 4 0 1 128 chain 121693 chr2 242193529 + 167035172 167036729 THE1A-int 1579 + 0 1579 15229 15 0 2 8 19 20 754 0 1 427 0 19 73 2 0 90 0 1 169 chain 26384 chr2 242193529 + 167036729 167037085 THE1A 353 + 0 353 47140 109 2 1 123 3 2 5 0 1 60 2 0 52 chain 15001 chr2 242193529 + 167068732 167068952 MER30 238 + 0 238 62269 72 0 1 13 26 43 109 chain 114727 chr2 242193529 + 167154653 167155958 L1P1 4361 + 3039 4341 16424 1112 1 0 160 1 0 17 2 1 12 chain 125034 chr2 242193529 + 167215940 167217295 L1PA2 6032 + 4676 6031 14693 1355 chain 23002 chr2 242193529 + 167267366 167267722 THE1B 368 + 1 368 52356 12 2 0 24 0 5 130 1 0 26 10 11 11 21 29 119 chain 121836 chr2 242193529 + 167267722 167269332 THE1B-int 1605 + 0 1593 15211 274 8 0 59 2 1 96 38 21 168 1 2 12 1 0 4 0 1 311 6 0 8 0 6 445 1 0 142 0 9 34 chain 5067 chr2 242193529 + 167316796 167316859 LTR16C 481 + 392 455 85323 63 chain 57757 chr2 242193529 + 167409723 167410748 L1PA8 5853 + 5139 5853 27034 42 0 1 312 0 1 67 1 0 47 5 3 23 302 0 19 5 0 24 2 1 9 1 0 72 1 0 93 chain 4016 chr2 242193529 + 167411176 167411221 L1MA4 2864 + 1834 1879 91330 45 chain 18427 chr2 242193529 + 167511215 167511587 THE1C 375 + 0 375 58197 60 0 7 16 63 61 35 40 39 84 4 0 38 0 3 32 chain 353338 chr2 242193529 + 167558323 167562508 L1P1 4361 + 1 4183 5875 573 1 0 127 13 6 242 0 4 243 60 61 1521 0 2 144 4 3 1223 1 0 33 chain 162008 chr2 242193529 + 167564687 167566509 L1PA3long 6157 + 4322 6155 11614 38 0 4 946 0 4 18 0 1 10 0 2 810 chain 26293 chr2 242193529 + 167621589 167622014 THE1C 375 + 0 375 47280 68 1 0 57 3 0 53 5 6 46 37 1 16 8 2 43 4 0 57 1 0 26 chain 56174 chr2 242193529 + 167623052 167623764 L1PA7 6471 + 5743 6467 27515 123 1 0 26 0 2 127 4 18 103 0 2 164 7 0 6 6 13 134 5 0 6 chain 292816 chr2 242193529 + 167633083 167637000 L1PA7 6471 + 1851 6468 7048 230 2 0 12 0 375 163 19 0 84 1 0 129 9 0 367 5 1 624 3 1 133 0 3 288 1 0 52 0 1 293 0 2 59 0 4 76 2 1 81 0 1 152 7 9 119 1 3 83 295 651 569 10 7 37 4 0 7 chain 7934 chr2 242193529 + 167689211 167689518 L1MDa 1598 + 1049 1366 75036 41 10 21 14 19 16 62 144 146 17 chain 13855 chr2 242193529 + 167733309 167733528 MER30 238 + 0 238 63789 99 0 1 4 7 22 24 4 10 39 7 4 35 chain 555348 chr2 242193529 + 167835043 167841185 L1PA3long 6157 + 0 6156 387 710 0 7 220 4 0 131 0 2 120 1 4 534 0 1 26 1 0 587 0 1 563 0 1 2403 0 4 577 0 1 260 1 0 4 chain 392634 chr2 242193529 + 167845327 167850922 L1PB1 5432 + 34 5390 5276 138 9 5 75 0 1 150 24 5 80 3 15 48 17 18 22 53 55 55 0 2 205 0 1 37 0 2 13 0 1 267 3 1 23 0 3 147 2 0 5 13 10 178 0 6 138 0 1 219 13 32 361 2 0 141 6 0 52 0 4 292 2 0 172 1 0 84 1 0 530 1 14 67 0 1 19 1 3 253 0 1 6 1 0 337 314 0 36 0 1 255 3 0 16 0 1 350 0 3 110 2 67 50 10 9 10 1 0 44 1 0 15 3 0 7 14 5 19 8 5 14 2 0 24 1 0 20 chain 23719 chr2 242193529 + 167885525 167885905 L1PB 1623 + 173 543 51252 15 19 16 35 2 1 29 4 3 47 0 1 78 2 1 72 4 0 14 1 0 29 0 1 4 2 1 23 chain 3362 chr2 242193529 + 167902104 167902141 MADE1 96 - 59 96 96460 37 chain 81213 chr2 242193529 + 167918294 167919445 HSMAR2 1300 + 44 1201 21388 12 0 1 6 1 0 231 8 4 17 4 9 13 0 5 5 5 0 153 0 2 147 1 2 99 8 9 287 6 5 27 1 0 5 3 5 31 11 12 70 chain 30993 chr2 242193529 + 167933835 167934229 LTR57 402 + 0 395 41134 364 3 4 27 chain 32654 chr2 242193529 + 167970612 167971031 MER57A1 433 + 0 433 39804 133 3 15 132 1 2 22 0 1 128 chain 53430 chr2 242193529 + 167974446 167975207 MER57-int 2662 + 40 815 28418 31 46 28 9 1 0 79 0 2 31 0 4 89 2 0 57 0 1 130 0 28 142 22 18 113 0 3 5 0 1 4 chain 9960 chr2 242193529 + 168019286 168019427 MER44A 345 + 107 269 70508 124 5 26 12 chain 17603 chr2 242193529 + 168080106 168080348 THE1B-int 1605 + 249 523 59117 58 11 16 109 0 25 8 0 2 56 chain 56653 chr2 242193529 + 168100710 168101366 L1PA7 6471 + 5813 6470 27373 500 3 4 153 chain 24751 chr2 242193529 + 168124842 168125134 L1PA7 6471 + 6177 6470 49655 57 0 2 230 1 0 4 chain 3526 chr2 242193529 + 168150045 168150087 MER5A1 166 + 88 130 95060 42 chain 3347 chr2 242193529 + 168187466 168187544 MIR 256 + 109 190 96621 17 27 30 34 chain 29493 chr2 242193529 + 168257064 168257455 MLT2A1 477 + 0 391 42618 168 5 2 9 0 1 22 1 2 21 0 1 143 0 4 12 4 0 6 chain 31641 chr2 242193529 + 168263450 168263923 MLT2A1 477 + 0 477 40634 142 0 1 26 13 11 22 1 2 79 20 0 102 4 0 8 8 0 8 3 39 37 chain 10081 chr2 242193529 + 168270096 168270210 L1PA8A 6298 + 6177 6291 70235 114 chain 44097 chr2 242193529 + 168304082 168304632 MLT2A2 560 + 0 560 32086 204 0 1 128 4 5 188 0 4 20 0 4 6 chain 27014 chr2 242193529 + 168318436 168318799 MER39 703 + 333 703 46248 77 0 4 54 3 4 162 1 2 39 0 1 27 chain 4605 chr2 242193529 + 168322216 168322271 LTR48 738 + 555 610 87775 55 chain 51337 chr2 242193529 + 168374251 168374838 L1PA6 6164 + 5562 6149 29105 587 chain 402242 chr2 242193529 + 168383853 168389232 L1PB1 5432 + 77 5420 5128 52 0 2 260 12 10 5 0 2 42 0 3 19 0 1 289 0 3 74 0 1 126 6 8 276 0 1 152 13 0 87 1 2 155 5 4 417 0 3 126 20 9 169 0 4 117 0 7 79 0 5 255 1 0 454 1 0 14 1 0 416 7 6 276 0 1 617 2 0 105 36 174 197 1 0 12 149 0 33 1 0 9 4 1 12 2 0 51 2 1 16 1 0 43 1 0 16 3 0 6 16 6 19 1 0 4 3 1 14 2 0 24 1 0 4 0 3 14 1 0 14 3 2 13 chain 3607 chr2 242193529 + 168395920 168395963 MADE1 96 + 54 96 94364 4 1 0 38 chain 28595 chr2 242193529 + 168508531 168508869 L1PA7 6471 + 6130 6468 43963 191 0 1 7 1 0 139 chain 109129 chr2 242193529 + 168604910 168606680 MSTA-int 1630 + 0 1628 17163 16 0 1 19 2 1 38 7 28 11 47 0 12 0 1 174 6 8 156 5 0 175 2 13 38 1 0 44 5 10 24 1 7 52 10 11 272 0 1 44 13 14 47 1 0 19 27 23 199 134 0 51 12 13 106 chain 25686 chr2 242193529 + 168606682 168607096 MSTA 426 + 0 426 48191 56 0 1 33 3 0 9 49 57 80 2 0 64 0 5 6 8 11 104 chain 400612 chr2 242193529 + 168614931 168620393 L1PB1 5432 + 12 5404 5144 7 1 0 6 1 0 27 3 2 13 6 12 209 0 1 263 2 0 15 0 1 4 1 0 62 8 9 76 0 1 160 0 1 4 1 0 512 8 0 153 0 1 263 0 1 54 0 1 201 0 3 427 2 1 340 1 0 356 0 1 253 0 1 129 35 36 108 4 6 228 1 2 59 0 1 20 0 15 89 0 1 150 0 3 54 0 1 89 19 21 42 0 2 120 6 0 75 1 3 90 0 1 4 0 2 90 0 20 20 0 3 38 0 1 107 115 18 16 4 1 20 1 0 9 1 0 9 2 0 3 2 0 8 2 0 53 23 26 31 10 9 10 23 12 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 chain 4298 chr2 242193529 + 168619955 168620006 L1PB1 5432 - 328 379 89509 51 chain 25063 chr2 242193529 + 168677839 168678136 L1PA7 6471 + 5607 5902 49178 14 2 0 281 chain 6206 chr2 242193529 + 168678806 168678879 L1MA6 2487 + 2154 2227 80335 73 chain 16657 chr2 242193529 + 168761908 168762165 L1PA8 5853 + 5595 5847 60203 13 2 0 70 2 1 14 16 16 31 2 1 19 1 0 87 chain 341601 chr2 242193529 + 168867268 168871045 L1PA4 6152 + 2019 5829 6035 474 0 32 658 1 0 1282 0 1 910 1 2 451 chain 3747 chr2 242193529 + 168950232 168950280 MLT2A1 477 + 418 464 93272 11 2 0 35 chain 33550 chr2 242193529 + 168953687 168954125 MER4A1 472 + 0 464 39044 15 1 7 8 1 0 193 11 32 209 chain 74141 chr2 242193529 + 168984817 168985933 L1PB1 5432 + 4352 5422 23050 164 0 1 90 1 34 73 1 0 128 0 1 152 1 2 4 1 0 102 1 2 10 52 2 29 1 0 12 5 1 8 2 0 50 6 5 14 1 0 45 1 0 15 28 15 11 12 9 15 2 0 24 1 0 21 1 0 13 1 0 18 chain 27077 chr2 242193529 + 169043050 169043403 THE1A 353 + 0 353 46158 74 0 1 4 1 0 31 1 0 81 1 4 7 2 0 151 chain 126488 chr2 242193529 + 169043417 169044978 THE1A-int 1579 + 16 1572 14484 209 0 3 416 13 4 453 1 2 4 1 0 305 0 1 159 chain 27569 chr2 242193529 + 169044987 169045338 THE1A 353 + 2 353 45486 108 1 0 81 6 7 155 chain 218505 chr2 242193529 + 169054233 169057524 L1PA10 4194 + 1152 4150 9082 87 12 0 126 0 1 98 0 1 17 0 1 101 7 0 10 0 2 32 24 25 217 0 3 391 0 1 212 304 0 62 56 59 12 1 2 5 2 0 11 3 0 12 10 11 19 0 4 59 0 1 240 1 9 123 0 1 5 1 0 16 3 1 9 0 4 501 0 6 52 9 8 132 1 0 33 0 4 238 3 0 34 chain 67898 chr2 242193529 + 169133782 169134584 HERVH-int 3825 + 2813 3825 24473 307 0 210 495 chain 32133 chr2 242193529 + 169136392 169136806 LTR7 482 + 0 444 40241 101 15 14 98 0 1 11 4 3 18 1 32 166 chain 3225 chr2 242193529 + 169140151 169140219 MER5A1 166 + 0 76 97707 24 19 27 25 chain 5162 chr2 242193529 + 169169211 169169275 LTR5B 1012 + 946 1012 84852 57 0 2 7 chain 16964 chr2 242193529 + 169212635 169212916 L1PB1 5432 + 5170 5427 59842 50 3 2 15 1 0 43 1 0 16 2 0 15 9 0 16 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 7868 chr2 242193529 + 169219581 169219743 L1PA16 3655 + 3484 3619 75205 58 12 0 9 0 12 14 3 0 15 19 0 11 5 0 16 chain 565527 chr2 242193529 + 169248623 169254656 L1HS 6032 + 1 6032 82 73 0 1 601 4 0 2459 1 2 2895 chain 239278 chr2 242193529 + 169261613 169264254 L1PA3long 6157 + 3513 6156 8489 1369 0 1 1121 7 9 139 1 0 4 chain 304303 chr2 242193529 + 169267266 169270750 L1PA5 6144 + 2641 6129 6733 868 1 0 436 0 5 1080 1 0 971 0 1 127 chain 24830 chr2 242193529 + 169304746 169305050 L1PA8 5853 + 5376 5677 49542 188 1 0 44 2 0 69 chain 108946 chr2 242193529 + 169326189 169327431 SVA_D 2077 + 0 1559 17188 4 1 0 6 1 0 6 1 0 12 0 11 839 0 83 75 0 2 83 0 78 29 1 96 28 0 49 37 0 3 101 1 0 17 chain 38675 chr2 242193529 + 169327451 169328441 SVA_F 1814 + 767 1325 32927 8 1 0 12 132 0 17 12 51 28 47 0 65 176 14 39 80 0 90 49 0 234 chain 9733 chr2 242193529 + 169327472 169327604 SVA_F 1814 + 917 1067 37079 30 0 15 36 0 3 66 chain 1893 chr2 242193529 + 169327665 169327708 SVA_F 1814 + 888 932 41695 9 1 2 33 chain 7669 chr2 242193529 + 169327773 169327877 SVA_F 1814 + 1188 1291 37079 86 1 0 17 chain 930 chr2 242193529 + 169327906 169327949 SVA_F 1814 + 904 947 91127 43 chain 3125 chr2 242193529 + 169327997 169328068 SVA_F 1814 + 1105 1174 41695 23 2 0 46 chain 3566 chr2 242193529 + 169328163 169328207 SVA_F 1814 + 855 900 55957 32 0 1 12 chain 29465 chr2 242193529 + 169352635 169353038 L1PA8 5853 + 5478 5853 42651 86 1 0 45 2 0 52 21 0 21 1 0 6 1 0 56 1 0 16 2 1 92 chain 3403 chr2 242193529 + 169355790 169355830 MADE2 80 + 0 40 96035 40 chain 221222 chr2 242193529 + 169367295 169369764 L1PA5 6144 + 3409 5877 9002 273 2 0 396 5 6 1793 chain 461354 chr2 242193529 + 169399222 169404446 L1PA4 6152 + 42 5300 4099 1194 0 1 471 0 1 139 0 1 1653 0 1 333 0 30 1434 chain 186294 chr2 242193529 + 169430090 169432304 L1PA7 6471 + 4247 6470 10285 165 0 2 67 1 0 38 0 2 428 1 0 672 1 0 77 0 2 608 8 7 24 9 26 10 8 0 90 2 0 5 chain 214816 chr2 242193529 + 169434257 169437627 L1MA2 4263 + 681 4114 9181 369 0 2 16 0 3 274 10 9 5 0 1 87 5 2 9 0 4 14 296 0 8 5 6 36 0 1 357 11 9 71 1 0 39 13 121 120 1 0 167 21 25 22 0 7 76 1 0 53 0 1 49 3 0 60 0 3 68 2 0 128 2 0 138 3 253 30 8 10 19 5 6 40 1 0 156 0 4 15 16 11 5 1 0 72 1 0 146 24 22 126 2 1 9 1 3 74 30 23 38 1 0 10 chain 3617 chr2 242193529 + 169446798 169446841 MER21C 908 + 117 160 94302 43 chain 540170 chr2 242193529 + 169452781 169458858 L1PA4 6152 + 0 6078 1329 708 1 2 265 0 1 1013 0 1 498 0 3 1796 0 2 1005 1 0 393 4 0 183 2 0 208 chain 20852 chr2 242193529 + 169469787 169471039 L1MA10 1535 + 721 1498 55307 12 7 5 110 1 0 36 0 1 99 886 428 36 38 23 27 chain 121370 chr2 242193529 + 169505003 169506468 SVA_D 2077 + 84 1729 15284 30 1 0 558 1 38 91 40 0 87 0 183 185 48 0 96 0 49 328 chain 3004 chr2 242193529 + 169505996 169506044 SVA_D 2077 + 1080 1129 41593 11 1 2 36 chain 4406 chr2 242193529 + 169534758 169534811 MLT1A1 405 + 336 389 88869 53 chain 22100 chr2 242193529 + 169649655 169649935 AluSp 311 + 10 295 53694 9 1 0 47 3 0 196 0 9 24 chain 8679 chr2 242193529 + 169754739 169754849 MSTB1-int 1597 + 0 110 73262 110 chain 6115 chr2 242193529 + 169816278 169816349 U3 216 + 0 71 80677 71 chain 130524 chr2 242193529 + 169816349 169817918 L1PA6 6164 + 4554 6162 13975 123 0 2 355 0 8 94 0 1 180 0 6 11 1 0 218 1 4 289 0 16 235 10 14 52 chain 128058 chr2 242193529 + 169841349 169842854 LTR12C 1709 + 0 1709 14271 104 5 4 201 0 1 4 1 0 483 0 200 114 1 0 6 2 0 107 0 4 413 0 4 64 chain 19300 chr2 242193529 + 169853925 169854182 L1PA8 5853 + 5597 5850 57235 13 2 0 130 2 1 19 1 0 90 chain 33937 chr2 242193529 + 169957314 169957720 L1PA5 6144 + 5736 6142 38758 253 7 0 10 0 7 136 chain 161091 chr2 242193529 + 169971731 169973523 L1PA3long 6157 + 2960 4753 11676 109 1 0 289 0 2 1393 chain 12662 chr2 242193529 + 169999850 170000000 AluSp 311 + 9 156 65696 54 3 0 93 chain 8627 chr2 242193529 + 170063480 170063714 Tigger7 736 + 0 214 73396 18 46 50 83 55 31 32 chain 62540 chr2 242193529 + 170071896 170072582 L1PA3long 6157 + 5471 6157 25745 686 chain 278509 chr2 242193529 + 170114804 170119294 HERVK22-int 3844 + 0 3844 7472 43 3 0 347 0 3 348 0 16 247 0 3 839 0 4 39 6 8 320 5 6 11 0 3 87 0 1 547 1 2 164 0 1 4 2 1 11 6 0 19 1 0 45 1 0 5 1 0 20 1 0 36 2 1 17 2 0 39 23 18 37 2 0 14 142 104 21 10 6 28 1 0 5 807 194 45 0 1 40 1 0 86 1 0 8 chain 533807 chr2 242193529 + 170125609 170132072 L1PA7 6471 + 6 6470 1667 197 29 31 7 0 1 44 0 2 124 7 0 4 0 1 816 0 2 389 1 0 1008 8 0 129 0 2 320 0 2 101 2 1 37 1 2 267 11 4 339 1 0 406 3 4 279 0 4 139 0 4 185 0 4 121 1 0 494 0 2 118 0 1 24 1 0 120 4 5 175 0 1 385 2 1 7 3 0 7 0 1 147 chain 155408 chr2 242193529 + 170149062 170150910 SVA_D 2077 + 59 2068 12045 570 120 0 96 0 3 33 3 0 117 0 183 252 0 98 657 chain 4107 chr2 242193529 + 170149632 170149712 SVA_D 2077 + 549 629 72714 80 chain 15347 chr2 242193529 + 170179461 170179780 MSTD 398 + 73 398 61854 59 112 118 30 0 1 46 1 0 71 chain 9547 chr2 242193529 + 170394166 170394282 MER85 139 + 0 126 71374 89 0 10 27 chain 16465 chr2 242193529 + 170432984 170433224 Tigger3b 1229 + 834 1078 60428 23 3 0 4 1 0 38 1 0 48 4 3 42 0 10 76 chain 9133 chr2 242193529 + 170480111 170480283 MER21A 919 + 21 255 72276 49 1 0 8 8 22 21 0 13 18 4 3 22 8 0 23 0 45 10 chain 14311 chr2 242193529 + 170482454 170482635 THE1B 368 + 188 368 63180 99 7 6 75 chain 32755 chr2 242193529 + 170613561 170614007 MLT2A1 477 + 0 477 39711 168 5 2 41 11 6 84 6 7 76 5 43 50 chain 458764 chr2 242193529 + 170629937 170635617 L1PA5 6144 + 1 6137 4162 107 16 30 15 59 58 64 24 25 85 13 21 12 5 4 155 0 1 206 0 1 26 0 17 119 26 1 690 4 0 194 3 409 204 0 11 29 0 1 73 0 4 231 0 5 196 5 1 180 6 5 241 10 23 360 0 1 403 0 5 414 1 0 241 1 0 424 1 5 173 0 4 497 1 0 25 1 0 140 chain 13109 chr2 242193529 + 170734679 170734888 MER4D 903 + 0 207 64916 50 1 0 25 1 0 40 1 0 14 24 25 53 chain 23730 chr2 242193529 + 170763927 170764225 AluY 311 + 0 299 51227 47 1 7 78 0 1 74 7 1 91 chain 4228 chr2 242193529 + 170884625 170884674 MLT1F1 559 + 494 543 89953 49 chain 81340 chr2 242193529 + 170915962 170916958 LTR13 1007 + 0 1006 21363 380 1 6 242 2 1 156 7 9 7 2 0 11 0 1 126 0 5 62 chain 21534 chr2 242193529 + 171015800 171016073 AluSp 311 + 11 277 54459 31 15 8 227 chain 13756 chr2 242193529 + 171034889 171035058 THE1B 368 + 0 183 63940 44 0 15 113 1 0 11 chain 8384 chr2 242193529 + 171087370 171087727 L1MEf 1413 + 447 833 73934 27 45 59 14 1 0 9 73 93 20 72 71 55 1 0 15 2 0 23 chain 4699 chr2 242193529 + 171088680 171088743 HAL1 992 + 406 471 87277 41 0 2 22 chain 29488 chr2 242193529 + 171172486 171172891 MSTA 426 + 0 425 42623 107 8 29 55 1 5 11 3 0 29 2 0 189 chain 3298 chr2 242193529 + 171175804 171175840 MER5B 177 + 2 38 97030 36 chain 6255 chr2 242193529 + 171244380 171244530 MER21C 908 + 294 442 80160 8 1 0 39 1 0 28 51 50 18 0 1 4 chain 14661 chr2 242193529 + 171290245 171290454 HSMAR2 1300 + 6 210 62722 10 2 1 48 1 3 125 6 0 17 chain 105559 chr2 242193529 + 171311786 171313127 THE1B-int 1605 + 17 1428 17613 255 1 7 108 1 2 6 0 64 229 13 13 702 1 0 25 chain 47661 chr2 242193529 + 171365032 171365617 LTR14C 587 + 0 587 30417 276 5 7 304 chain 316589 chr2 242193529 + 171378024 171382720 L1PA8 5853 + 1777 5853 6477 128 0 2 192 321 0 425 5 4 4 0 1 348 5 1 73 0 4 26 0 5 31 0 1 69 0 1 106 0 4 143 0 1 36 3 0 113 0 2 501 5 6 515 18 8 80 0 3 398 0 6 169 0 4 7 336 27 343 1 0 44 2 0 64 2 0 5 1 2 9 2 1 51 7 6 14 1 0 93 chain 19410 chr2 242193529 + 171414773 171415125 THE1B 368 + 0 356 57121 111 14 15 51 59 63 66 7 6 44 chain 126028 chr2 242193529 + 171423288 171424872 THE1C-int 1605 + 0 1605 14551 17 1 3 88 1 4 140 12 10 67 0 6 105 5 12 425 0 1 4 1 0 635 0 5 83 chain 31273 chr2 242193529 + 171424872 171425249 THE1C 375 + 0 375 40917 183 1 0 167 1 0 25 chain 12088 chr2 242193529 + 171450084 171450372 L1PB1 5432 + 5159 5422 66688 9 2 0 52 2 1 15 1 0 45 83 65 24 1 0 21 1 0 8 1 0 23 chain 7234 chr2 242193529 + 171467319 171467407 Tigger2 2703 + 2557 2645 76849 72 0 1 4 1 0 11 chain 3885 chr2 242193529 + 171507088 171507133 MADE1 96 + 1 46 92254 45 chain 43721 chr2 242193529 + 171614676 171615826 L1PB4 2604 + 1890 2552 32307 7 0 14 167 1 0 173 19 13 58 407 0 52 44 12 11 72 16 139 chain 48191 chr2 242193529 + 171617284 171617817 L1PA3long 6157 + 5620 6156 30222 203 0 1 185 0 2 145 chain 134242 chr2 242193529 + 171774053 171775537 SVA_C 1631 + 0 1631 13622 12 1 18 780 0 128 417 0 2 274 chain 3933 chr2 242193529 + 171897993 171898099 L1MC 810 + 610 709 91882 19 51 44 36 chain 154659 chr2 242193529 + 171899246 171900972 SVA_D 2077 + 42 2077 12074 866 4 39 46 1 0 10 0 51 38 0 1 88 0 225 39 1 0 627 1 0 5 chain 8441 chr2 242193529 + 172123038 172123164 Tigger3b 1229 + 598 730 73817 25 0 4 25 1 5 43 1 0 4 1 0 26 chain 98575 chr2 242193529 + 172139275 172141575 Tigger1 2417 + 401 1808 18469 45 0 1 12 306 0 173 35 54 58 13 9 241 0 5 81 0 4 262 8 6 32 0 3 77 625 0 202 6 5 12 0 13 112 chain 16966 chr2 242193529 + 172152698 172152918 L1PA8 5853 + 5637 5853 59837 41 2 1 8 1 0 53 2 1 19 1 0 93 chain 20399 chr2 242193529 + 172164848 172167166 THE1A 353 + 0 330 55884 104 8 7 81 2015 28 110 chain 129398 chr2 242193529 + 172167189 172168763 THE1A-int 1579 + 0 1579 14104 163 13 9 128 0 1 5 0 1 288 1 7 54 6 1 376 0 4 301 2 4 237 chain 27904 chr2 242193529 + 172168763 172169106 THE1A 353 + 0 341 45031 110 1 0 92 2 1 138 chain 15721 chr2 242193529 + 172222175 172222457 L1PB1 5432 + 5134 5391 61384 12 1 0 10 9 5 6 2 0 53 2 1 16 1 0 44 1 0 22 14 5 17 10 7 14 2 0 24 1 0 21 chain 2732 chr2 242193529 + 172255519 172255580 MIR 256 + 87 148 102102 16 17 16 14 0 1 14 chain 565167 chr2 242193529 + 172315270 172321297 L1HS 6032 + 4 6032 90 5595 0 1 432 chain 7378 chr2 242193529 + 172363673 172363770 MER30B 195 + 101 195 76452 53 3 0 41 chain 43363 chr2 242193529 + 172381811 172382947 MER41A 554 + 13 554 32531 112 0 1 254 601 0 89 1 6 79 chain 148670 chr2 242193529 + 172537224 172539055 SVA_F 1814 + 14 1788 12442 108 17 27 433 0 1 118 0 40 139 0 3 11 1 2 51 0 15 251 127 0 575 chain 5964 chr2 242193529 + 172538353 172538457 SVA_F 1814 + 1037 1141 54862 104 chain 3963 chr2 242193529 + 172542097 172542188 LTR7A 91 + 0 85 91676 14 2 0 7 5 3 15 2 1 35 2 1 9 chain 161200 chr2 242193529 + 172542203 172544272 HERVH-int 3825 + 0 2117 11669 336 9 8 20 6 7 102 10 12 47 1 0 38 2 1 9 1 0 23 82 115 21 0 1 4 1 0 12 0 1 22 1 0 160 0 1 347 1 0 479 0 1 212 0 15 123 chain 37157 chr2 242193529 + 172544427 172544874 L1PA7 6471 + 6022 6469 36639 447 chain 30823 chr2 242193529 + 172621144 172622999 MLT2A1 477 + 1 468 41294 22 0 5 18 0 1 28 2 0 89 9 6 213 9 2 10 1 0 10 4 0 12 1396 19 32 chain 18104 chr2 242193529 + 172638591 172638823 LTR12D 1347 + 405 667 58564 129 3 34 17 9 8 74 chain 512976 chr2 242193529 + 172648380 172654767 L1PA6 6164 + 0 6162 2621 139 8 20 42 0 1 307 2 1 418 1 30 298 1 0 650 0 5 302 8 12 379 0 1 109 1 7 441 0 3 24 0 1 54 1 5 1156 1 0 592 303 0 269 0 1 14 0 1 129 2 5 13 0 1 366 4 13 353 chain 76084 chr2 242193529 + 172658220 172659260 MER11A 1151 + 6 1151 22546 73 21 31 13 4 0 8 1 90 73 4 0 149 0 1 92 0 7 16 1 0 246 2 1 56 3 0 169 6 5 40 12 16 16 4 12 31 chain 19952 chr2 242193529 + 172659295 172659593 MER34 540 + 246 540 56458 18 8 11 214 22 15 36 chain 145768 chr2 242193529 + 172689309 172691003 L1PA6 6164 + 4463 6162 12631 1539 2 1 28 0 6 125 chain 9945 chr2 242193529 + 172695143 172695262 MER6A 605 + 457 576 70541 119 chain 4813 chr2 242193529 + 172695727 172695876 MLT1E1A 663 + 340 457 86637 13 1 0 15 74 43 46 chain 4788 chr2 242193529 + 172760337 172760416 L1MDa 1598 + 528 606 86756 39 8 7 32 chain 32705 chr2 242193529 + 172817634 172818323 L1PB1 5432 + 4861 5422 39758 66 0 1 175 111 11 24 1 0 4 7 6 10 16 10 52 2 1 16 1 0 43 1 0 16 1 0 4 2 0 5 14 6 14 25 21 27 1 0 18 1 0 13 2 1 17 chain 5001 chr2 242193529 + 172843614 172843709 MER46C 351 + 99 183 85655 25 24 13 46 chain 83300 chr2 242193529 + 172873620 172877542 L1PA7 6471 + 5382 6470 20964 119 0 1 119 1 0 387 2827 11 162 1 0 45 3 1 159 16 0 33 8 9 42 chain 20308 chr2 242193529 + 173038462 173038733 L1PA8 5853 + 5564 5836 56009 18 0 4 24 2 0 69 1 0 11 1 0 50 2 1 16 1 3 76 chain 4685 chr2 242193529 + 173071885 173072002 Charlie1b 519 + 398 519 87356 15 42 47 10 1 0 49 chain 46218 chr2 242193529 + 173093640 173094148 L1PA2 6032 + 5519 6028 30952 176 0 1 332 chain 20341 chr2 242193529 + 173133753 173134016 AluY 311 + 51 308 55960 72 10 4 181 chain 3535 chr2 242193529 + 173247595 173247634 L1MA10 1535 + 1277 1316 94978 39 chain 16783 chr2 242193529 + 173305429 173305843 LTR54B 464 + 23 464 60053 98 124 62 10 0 100 7 6 0 13 4 0 20 4 5 11 1 0 10 1 0 27 10 9 38 0 1 30 chain 37882 chr2 242193529 + 173308770 173309231 LTR2 463 + 0 463 36157 135 0 1 228 10 11 88 chain 41325 chr2 242193529 + 173352825 173353359 MER41A 554 + 0 547 33775 55 6 5 127 0 10 203 0 1 60 2 0 8 7 12 66 chain 144897 chr2 242193529 + 173499878 173502407 MER41-int 2638 + 400 2636 12700 49 15 14 26 455 144 52 7 9 41 6 7 27 0 1 29 9 23 186 0 1 200 0 1 116 1 2 30 1 0 44 0 1 141 0 2 13 0 8 101 1 0 50 1 10 69 1 0 59 0 1 19 2 0 25 14 12 53 23 6 56 2 0 74 3 0 16 0 2 142 11 10 24 0 6 80 19 18 236 chain 540482 chr2 242193529 + 173559615 173566050 L1PA7 6471 + 0 6464 1309 148 0 6 6 20 14 295 1 0 52 6 7 329 1 0 303 1 3 467 0 1 309 0 1 491 0 1 204 1 2 59 1 2 705 0 1 97 1 0 115 0 1 40 0 1 220 1 2 689 1 0 7 0 1 751 0 6 20 9 22 243 1 0 686 3 4 75 0 1 77 chain 22046 chr2 242193529 + 173569562 173569808 L1PA4 6152 + 5891 6138 53775 147 0 1 99 chain 5212 chr2 242193529 + 173613496 173613709 MIR 256 + 6 219 84620 9 0 1 4 7 0 12 31 39 56 79 77 15 chain 19445 chr2 242193529 + 173636759 173637185 L1MA5A 2387 + 2003 2370 57093 29 2 1 36 1 0 38 1 0 48 2 0 23 6 2 35 3 0 15 28 0 44 73 57 9 1 0 19 1 0 4 1 0 7 chain 5568 chr2 242193529 + 173637739 173638190 L1ME1 1623 + 181 655 82948 53 355 379 38 1 0 4 chain 29161 chr2 242193529 + 173694266 173694693 L1PB2 3958 + 3422 3838 43107 16 2 0 13 4 0 94 1 0 72 1 0 64 9 8 20 0 1 24 1 2 5 1 0 12 2 0 22 2 1 62 chain 100259 chr2 242193529 + 173726014 173727537 L1PA15 4387 + 2865 4366 18269 272 7 1 29 2 1 115 28 47 153 0 1 9 1 0 63 13 5 13 6 0 106 0 5 128 2 0 20 5 1 57 3 1 40 1 0 166 12 11 22 1 0 34 0 3 17 1 0 23 33 28 31 6 3 41 6 4 14 5 0 27 1 0 10 chain 2880 chr2 242193529 + 173742109 173742141 FordPrefect_a 431 + 354 386 101004 32 chain 110366 chr2 242193529 + 173888663 173890320 THE1B-int 1605 + 0 1605 17024 12 5 6 103 54 0 136 0 1 15 5 2 154 39 22 174 0 12 57 59 70 64 11 12 194 0 1 113 1 0 156 26 22 214 0 1 5 1 0 59 chain 3940 chr2 242193529 + 173897330 173897374 ORSL 269 + 224 268 91826 44 chain 5542 chr2 242193529 + 174211869 174211948 MER33 330 + 213 290 83064 35 1 0 25 2 0 6 0 1 10 chain 28268 chr2 242193529 + 174225912 174226222 AluYa5 310 + 0 305 44459 118 4 0 8 1 0 179 chain 24504 chr2 242193529 + 174252078 174252369 AluSp 311 + 7 297 50013 170 1 0 120 chain 463284 chr2 242193529 + 174269465 174274464 L1PA2 6032 + 1034 6029 4044 790 1 0 3720 3 0 485 chain 297797 chr2 242193529 + 174287996 174291345 L1PA5 6144 + 2024 5382 6893 799 0 1 610 0 3 436 0 1 467 0 4 871 1 0 77 0 1 88 chain 7479 chr2 242193529 + 174315786 174315980 L1PB1 5432 + 5251 5423 76177 20 55 42 13 3 1 5 1 0 14 2 0 24 1 0 23 1 0 11 1 0 14 1 0 5 chain 3376 chr2 242193529 + 174323712 174323771 L1MC5 759 + 686 741 96328 25 12 8 22 chain 58111 chr2 242193529 + 174359519 174360211 L1PA6 6164 + 5464 6157 26930 510 3 2 4 0 1 131 0 1 44 chain 22876 chr2 242193529 + 174388746 174389052 THE1C 375 + 0 335 52540 115 4 3 65 3 4 82 0 29 37 chain 11982 chr2 242193529 + 174435277 174435451 MER2 342 + 80 253 66869 72 3 0 40 0 1 13 10 11 36 chain 59511 chr2 242193529 + 174448028 174449552 L1PA16 3655 + 2560 3415 26505 44 0 1 15 301 2 53 14 13 39 378 0 124 0 1 50 1 0 15 1 0 37 0 1 27 0 2 36 0 6 103 1 0 4 2 4 65 1 0 71 0 1 17 2 0 33 0 1 90 chain 35343 chr2 242193529 + 174509449 174510281 L1M1 2793 + 1119 1668 37804 55 291 6 70 4 0 18 12 5 52 5 7 19 1 3 7 3 0 2 0 1 6 0 1 22 0 2 164 0 7 27 0 1 54 1 2 5 1 0 13 chain 3320 chr2 242193529 + 174589815 174589858 Charlie4a 502 + 280 323 96849 43 chain 86141 chr2 242193529 + 174671105 174672167 MER11B 1079 + 0 1057 20404 672 16 1 39 0 5 49 5 8 105 0 1 149 0 1 27 chain 16776 chr2 242193529 + 174712356 174712581 MER6A 605 + 362 594 60060 179 12 19 34 chain 39381 chr2 242193529 + 174727061 174727577 MER41C 542 + 11 528 35095 38 0 1 102 1 0 158 7 8 210 chain 4241 chr2 242193529 + 174742860 174742916 Ricksha_c 1012 + 94 150 89873 28 0 1 22 1 0 5 chain 8420 chr2 242193529 + 174758423 174758641 Tigger4a 237 + 0 218 73861 25 0 1 6 10 0 45 59 61 14 0 1 10 12 0 13 0 18 24 chain 4590 chr2 242193529 + 174899593 174899651 MER58C 217 + 154 212 87845 58 chain 16714 chr2 242193529 + 174910746 174910924 AluYd8 298 + 116 294 60138 178 chain 5444 chr2 242193529 + 174927178 174927245 MER4A 717 + 650 717 83488 67 chain 138305 chr2 242193529 + 174953441 174955613 L1PB1 5432 + 3473 5411 13239 33 0 7 106 0 6 106 21 0 496 1 0 319 0 1 81 4 1 74 0 2 112 7 10 11 0 1 259 202 16 24 2 1 5 1 0 12 32 12 52 2 1 14 5 4 42 1 0 15 2 0 6 14 6 17 2 0 7 1 0 14 2 0 24 1 0 22 1 0 12 1 0 7 chain 22780 chr2 242193529 + 174961314 174961596 AluSp 311 + 10 287 52703 40 12 7 230 chain 15965 chr2 242193529 + 174979650 174979860 AluSc 308 + 50 260 61072 86 8 5 7 0 3 109 chain 26281 chr2 242193529 + 174988078 174988373 AluYg6 310 + 1 297 47304 44 6 7 245 chain 156926 chr2 242193529 + 175082889 175084643 L1PA3long 6157 + 4388 6146 11944 587 0 3 412 1 0 10 0 3 501 1 0 242 chain 50306 chr2 242193529 + 175100455 175101032 LTR10C 591 + 0 580 29452 113 0 2 62 0 1 156 1 2 180 1 0 64 chain 135300 chr2 242193529 + 175107526 175109188 SVA_C 1631 + 0 1631 13510 17 10 4 194 1 0 404 0 37 63 3 0 96 20 14 8 48 0 15 4 0 12 1 0 46 1 0 40 1 0 53 0 1 14 1 0 212 0 3 398 chain 2162 chr2 242193529 + 175108342 175108374 SVA_C 1631 + 878 910 54325 32 chain 42669 chr2 242193529 + 175148455 175149073 MER4B 649 + 0 639 32960 36 12 18 80 1 0 13 5 6 39 2 0 61 0 28 121 0 3 13 13 1 5 2 0 136 0 1 72 1 0 6 chain 3457 chr2 242193529 + 175155992 175156032 MLT1E2 623 + 23 63 95580 40 chain 274005 chr2 242193529 + 175189721 175192885 L1PA5 6144 + 2970 6142 7602 90 0 1 97 1 0 18 1 0 82 0 2 72 0 3 1533 1 2 401 1 5 10 2 1 855 chain 8546 chr2 242193529 + 175226445 175226557 L1MC5 759 + 349 461 73567 112 chain 4615 chr2 242193529 + 175228706 175228800 MER3 215 + 6 113 87720 18 28 41 48 chain 25991 chr2 242193529 + 175235668 175236031 L1PA8 5853 + 5496 5853 47726 19 1 2 44 2 1 48 2 0 67 1 0 11 1 0 52 2 1 19 1 0 93 chain 84805 chr2 242193529 + 175296546 175297565 L1PA10 4194 + 3129 4140 20659 6 7 0 286 0 1 494 0 1 199 3 0 24 chain 28629 chr2 242193529 + 175326203 175326529 LTR17 781 + 0 326 43900 326 chain 5745 chr2 242193529 + 175330383 175330463 MADE1 96 - 0 96 82149 38 4 20 38 chain 88203 chr2 242193529 + 175387640 175388704 MER11C 1089 + 0 1074 20002 135 1 0 115 0 1 66 0 4 369 0 4 43 0 1 325 1 2 9 chain 32709 chr2 242193529 + 175450954 175451372 LOR1b 457 + 40 457 39753 15 9 11 77 3 0 314 chain 27247 chr2 242193529 + 175459598 175459950 THE1A 353 + 0 353 45898 64 0 2 43 12 11 233 chain 126162 chr2 242193529 + 175459950 175461519 THE1A-int 1579 + 0 1573 14528 504 0 5 1051 1 0 13 chain 27024 chr2 242193529 + 175461524 175461863 THE1A 353 + 0 341 46238 110 1 0 96 1 4 131 chain 71073 chr2 242193529 + 175504579 175505386 L1PA5 6144 + 5064 5872 23748 741 0 1 66 chain 331542 chr2 242193529 + 175505659 175509585 L1PA6 6164 + 2187 6162 6190 146 0 1 114 1 10 738 0 1 815 0 2 221 1 0 312 3 33 64 1 0 37 1 0 637 0 4 6 0 1 497 0 1 180 1 2 142 0 2 9 chain 29456 chr2 242193529 + 175548372 175548686 AluYb8 318 + 0 312 42663 18 2 0 294 chain 123070 chr2 242193529 + 175602964 175604403 L1PA7 6471 + 5022 6469 15012 599 0 3 86 1 0 113 0 3 482 1 2 146 0 2 11 chain 31392 chr2 242193529 + 175615383 175615813 MSTA 426 + 0 408 40816 203 10 6 40 18 0 159 chain 74591 chr2 242193529 + 175648695 175649799 L1PREC2 3366 + 139 1237 22936 25 46 38 7 1 0 5 0 2 7 2 0 9 1 0 15 1 0 10 2 0 32 1 0 112 1 0 67 1 0 177 7 17 85 3 2 71 0 1 296 8 10 4 1 0 87 5 4 15 chain 259377 chr2 242193529 + 175649830 175653718 L1PB1 5432 + 1591 5103 7989 231 10 6 6 0 1 404 0 1 5 2 0 6 4 5 177 0 1 4 1 0 58 10 12 283 1 0 18 1 0 9 2 0 5 4 6 25 1 2 8 0 1 64 0 4 97 2 1 183 311 0 85 1 2 203 0 1 88 65 13 4 0 1 121 1 0 78 0 9 11 0 1 539 38 11 247 0 1 4 6 7 96 46 3 22 2 33 119 1 0 5 0 1 45 0 1 96 1 10 32 chain 526996 chr2 242193529 + 175668025 175674797 L1PA7 6471 + 0 6465 1956 406 5 6 111 0 1 135 1 0 39 1 2 90 1 10 689 1 2 49 0 1 18 1 2 602 0 1 355 0 2 34 0 2 84 1 0 50 0 1 459 330 0 325 5 7 40 1 0 26 0 4 28 2 1 421 1 0 257 0 1 59 0 1 531 0 1 768 1 0 515 11 12 172 0 1 138 3 0 6 chain 520199 chr2 242193529 + 175708820 175715273 L1PA7 6471 + 3 6465 2266 224 19 0 9 1 16 158 0 2 391 0 10 768 0 1 186 1 0 267 0 1 123 5 1 4 0 1 96 1 0 139 0 4 232 9 6 226 5 6 334 3 4 6 0 1 771 1 3 237 1 2 4 1 0 206 0 1 30 0 1 8 0 1 85 7 6 5 0 1 710 0 1 332 6 7 277 4 1 387 29 28 135 3 0 7 chain 413814 chr2 242193529 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chain 34485 chr2 242193529 + 175857352 175857798 LTR12F 595 + 0 595 38366 103 11 160 99 0 1 169 2 1 62 chain 4254 chr2 242193529 + 175887015 175887065 L1PB4 2604 + 2492 2542 89800 50 chain 314804 chr2 242193529 + 175892660 175896509 L1PA7 6471 + 2629 6457 6513 65 0 1 194 0 4 251 0 1 183 3 4 248 1 0 252 3 0 301 0 2 687 0 1 143 5 6 89 2 0 135 6 7 407 0 1 10 1 0 12 0 1 90 31 5 183 5 5 372 40 38 130 chain 477337 chr2 242193529 + 175957590 175963710 L1PA3long 6157 + 8 6156 3691 107 0 1 4 9 22 76 1 0 207 6 5 148 0 1 24 1 0 102 7 14 66 39 56 124 25 0 213 94 85 165 0 5 372 6 8 34 0 4 355 0 2 118 3 1 206 0 3 635 1 0 43 0 1 284 0 4 190 0 4 552 2 2 1753 4 6 139 0 2 5 chain 20335 chr2 242193529 + 176042965 176043309 THE1B 368 + 0 356 55966 13 2 0 27 6 11 121 5 4 22 45 55 103 chain 10449 chr2 242193529 + 176048830 176048982 THE1D 372 + 0 162 69521 52 13 23 87 chain 32096 chr2 242193529 + 176368440 176368964 MER1A 529 + 0 525 40276 14 71 81 287 4 5 60 0 1 11 15 0 6 2 6 54 chain 3791 chr2 242193529 + 176369781 176369850 MER121 330 + 130 197 92912 42 13 11 14 chain 31481 chr2 242193529 + 176373961 176374509 L1MA3 4352 + 3740 4260 40747 30 0 5 125 1 2 12 9 1 40 0 5 133 63 42 69 20 14 18 4 0 24 chain 23118 chr2 242193529 + 176418593 176418866 L1PA7 6471 + 5510 5785 52183 86 0 1 173 1 2 13 chain 23111 chr2 242193529 + 176428984 176429335 THE1D 372 + 0 372 52193 61 0 4 7 1 7 55 0 2 30 14 22 5 5 0 28 7 13 138 chain 4107 chr2 242193529 + 176459739 176459785 MADE1 96 + 50 96 90725 46 chain 23269 chr2 242193529 + 176514962 176515277 Tigger3b 1229 + 827 1143 51976 111 12 10 66 0 3 126 chain 104682 chr2 242193529 + 176624674 176625896 L1PA7 6471 + 5236 6461 17729 22 0 1 363 2 0 163 0 2 20 0 2 652 chain 19571 chr2 242193529 + 176642424 176642636 AluYa5 310 + 91 301 56931 32 2 0 178 chain 23141 chr2 242193529 + 176771963 176772317 THE1B 368 + 0 368 52157 13 2 0 27 0 5 62 2 3 62 3 1 27 1 0 4 5 10 10 11 19 125 chain 544307 chr2 242193529 + 176796422 176802424 L1PA3long 6157 + 2 6157 1067 151 0 1 286 0 1 335 0 128 821 0 1 596 0 4 1093 0 13 1516 0 1 361 0 4 843 chain 34223 chr2 242193529 + 176810951 176811330 L1PA7 6471 + 6088 6467 38548 379 chain 24470 chr2 242193529 + 176816442 176816736 L1PA7 6471 + 6169 6462 50078 145 1 0 148 chain 5375 chr2 242193529 + 176858420 176858497 MADE1 96 + 0 95 83818 42 1 17 9 0 2 25 chain 65673 chr2 242193529 + 176881814 176882586 L1PA6 6164 + 5391 6162 25035 414 2 1 356 chain 9200 chr2 242193529 + 176909483 176909619 L1PA8 5853 + 5713 5847 72122 27 2 1 15 8 7 84 chain 70185 chr2 242193529 + 176922272 176923083 L1PA6 6164 + 5355 6162 23958 801 4 0 6 chain 107893 chr2 242193529 + 176951064 176952245 L1PA3long 6157 + 4976 6157 17342 1181 chain 21727 chr2 242193529 + 176966929 176967244 AluY 311 + 0 295 54197 44 39 23 65 0 1 149 5 0 13 chain 31737 chr2 242193529 + 176994311 176994679 L1PA6 6164 + 5794 6162 40545 368 chain 102270 chr2 242193529 + 177007666 177009102 LTR12C 1709 + 0 1708 18040 58 25 26 105 12 8 103 1 2 162 4 5 181 0 119 68 1 0 116 10 167 87 24 0 8 20 13 72 4 5 34 0 29 259 6 5 76 chain 4895 chr2 242193529 + 177130214 177130273 MER5A1 166 + 101 160 86182 59 chain 6297 chr2 242193529 + 177154505 177154578 MER41A 554 + 395 468 80011 73 chain 6591 chr2 242193529 + 177194982 177195064 HY1 111 + 0 82 79010 82 chain 23666 chr2 242193529 + 177268688 177268969 AluSp 311 + 0 288 51332 34 0 7 247 chain 4019 chr2 242193529 + 177314890 177314949 MER5A1 166 + 8 80 91312 7 0 14 14 1 0 37 chain 12290 chr2 242193529 + 177328506 177328644 L1PA5 6144 + 5997 6135 66300 138 chain 2648 chr2 242193529 + 177340572 177340637 MER33 330 + 110 174 102728 28 21 20 16 chain 17130 chr2 242193529 + 177417251 177417472 Tigger4b 360 + 139 359 59664 62 0 1 102 4 2 53 chain 12118 chr2 242193529 + 177454931 177455111 MER30B 195 + 5 195 66639 33 6 16 37 0 3 62 7 4 35 chain 295362 chr2 242193529 + 177456750 177460326 L1PA7 6471 + 2865 6468 6967 547 0 4 106 0 1 21 0 4 14 0 1 331 2 0 181 4 0 545 2 10 35 0 8 517 1 5 9 1 0 7 0 1 409 0 3 218 14 17 43 5 5 78 4 4 470 3 0 9 chain 46635 chr2 242193529 + 177480191 177480730 L1PA5 6144 + 5598 6137 30802 293 1 0 95 1 3 9 1 0 139 chain 9849 chr2 242193529 + 177558740 177558883 MSTB2-int 240 + 83 230 70724 34 2 1 29 1 6 77 chain 10267 chr2 242193529 + 177571383 177571538 MLT1A 405 + 7 162 69868 43 0 1 6 1 0 28 1 0 36 5 6 35 chain 26093 chr2 242193529 + 177642723 177643109 THE1B 368 + 0 357 47583 59 35 11 98 1 0 24 2 0 108 2 0 57 chain 120892 chr2 242193529 + 177643120 177644699 THE1B-int 1605 + 0 1605 15362 25 3 0 5 15 18 368 15 51 261 0 1 270 0 1 9 1 2 245 21 8 341 chain 46946 chr2 242193529 + 177681610 177682373 MER4D1 891 + 0 797 30678 30 27 28 89 1 0 90 0 28 145 1 0 20 1 0 47 52 55 65 4 11 54 4 0 9 37 39 87 chain 23822 chr2 242193529 + 177691682 177692103 LTR23 429 + 0 429 51067 14 2 1 20 6 23 35 17 11 102 4 1 48 28 29 30 2 0 6 4 6 103 chain 7324 chr2 242193529 + 177776582 177776701 MLT1B 390 + 61 173 76585 64 17 10 38 chain 24821 chr2 242193529 + 177776812 177777159 THE1C 375 + 0 355 49553 108 2 0 34 1 5 64 2 3 10 4 7 12 0 1 6 0 2 98 1 0 5 chain 558676 chr2 242193529 + 177785403 177791536 L1PA3long 6157 + 6 6146 211 862 0 1 1454 1 2 1369 0 1 975 0 1 691 0 3 781 chain 21913 chr2 242193529 + 177808848 177809252 L1MB3 1562 + 1175 1553 53954 22 8 7 49 1 0 59 7 10 30 1 0 47 0 2 15 49 22 82 5 4 29 chain 10757 chr2 242193529 + 177836326 177836483 LTR12C 1709 + 837 1037 68943 72 3 5 63 1 42 18 chain 170651 chr2 242193529 + 177849434 177851537 L1PA5 6144 + 4230 6135 11073 174 199 0 51 0 1 1516 1 2 57 1 0 104 chain 37374 chr2 242193529 + 177857996 177858408 L1PA5 6144 + 4881 5294 36502 89 0 1 323 chain 74648 chr2 242193529 + 177858408 177859251 L1PA5 6144 + 5296 6144 22925 735 1 0 86 0 6 21 chain 14710 chr2 242193529 + 177894449 177894723 MER49 923 + 0 283 62665 23 4 12 67 63 64 117 chain 24723 chr2 242193529 + 177902062 177902440 LTR7B 505 + 0 494 49688 105 0 10 56 13 81 37 2 1 21 1 42 88 14 13 20 7 6 14 chain 163833 chr2 242193529 + 177944858 177947784 SVA_F 1814 + 10 1812 11495 635 0 1 215 1007 0 86 0 15 39 1 0 10 1 0 159 1 0 43 130 0 599 chain 3244 chr2 242193529 + 177945708 177945746 SVA_F 1814 + 911 948 93171 26 1 0 11 chain 7867 chr2 242193529 + 177945783 177945970 SVA_F 1814 + 937 1089 44713 10 55 20 122 chain 3225 chr2 242193529 + 177945813 177945848 SVA_F 1814 + 1108 1143 63076 35 chain 1375 chr2 242193529 + 177945970 177946002 SVA_F 1814 + 1138 1170 86864 32 chain 13253 chr2 242193529 + 177946002 177946224 SVA_F 1814 + 1122 1291 64703 10 1 0 80 61 10 52 1 0 17 chain 1063 chr2 242193529 + 177946107 177946139 SVA_F 1814 + 886 918 80300 32 chain 34961 chr2 242193529 + 177946236 177946630 SVA_F 1814 + 888 1291 38049 59 0 15 39 1 0 10 1 0 148 1 0 11 1 0 11 1 0 93 1 0 17 chain 5040 chr2 242193529 + 177946630 177946715 SVA_F 1814 + 1116 1200 48944 61 1 0 23 chain 5100 chr2 242193529 + 177947055 177947107 SVA_F 1814 + 1037 1089 73149 52 chain 2182 chr2 242193529 + 177947107 177947129 SVA_F 1814 + 962 984 105375 22 chain 3393 chr2 242193529 + 177947133 177947170 SVA_F 1814 + 1160 1197 96148 37 chain 131422 chr2 242193529 + 177955614 177957061 L1PA4 6152 + 4694 6151 13878 417 0 1 889 0 8 29 0 1 112 chain 62738 chr2 242193529 + 177968655 177969432 L1PA8 5853 + 5074 5853 25702 23 9 16 451 1 0 44 2 0 136 1 0 16 1 0 93 chain 566625 chr2 242193529 + 177973073 177979090 L1HS 6032 + 0 6032 49 4275 0 2 413 0 14 1176 1 0 152 chain 452862 chr2 242193529 + 178032538 178038037 L1PA8 5853 + 326 5853 4310 319 0 6 96 5 2 808 2 0 45 0 5 72 0 1 286 8 9 48 1 0 69 0 22 374 4 5 389 2 0 218 0 1 280 3 1 69 1 2 195 0 1 13 0 2 34 0 1 434 0 1 47 0 1 62 5 6 90 1 0 173 9 10 487 14 12 60 1 3 479 8 7 39 2 0 69 1 0 9 1 0 51 1 0 21 1 0 93 chain 6302 chr2 242193529 + 178038912 178039004 U6 107 + 11 107 79984 23 6 10 63 chain 528105 chr2 242193529 + 178049371 178055508 L1PA5 6144 + 0 6144 1910 550 1 2 617 9 0 38 0 1 500 0 1 597 6 0 1612 0 1 361 0 2 187 9 10 53 6 7 169 12 24 87 0 1 309 4 4 159 3 0 5 7 11 309 1 2 376 1 0 149 chain 11792 chr2 242193529 + 178103191 178103353 L1MB5 1630 + 1300 1467 67227 92 1 0 19 3 9 47 chain 5465 chr2 242193529 + 178142545 178142607 U5 65 + 0 62 83376 62 chain 5895 chr2 242193529 + 178229497 178229962 MER5A 189 + 26 188 81508 45 378 75 42 chain 7826 chr2 242193529 + 178326973 178327149 L1PB1 5432 + 5268 5422 75304 16 3 0 9 26 15 18 12 9 11 2 0 24 1 0 22 1 0 12 1 0 18 chain 517662 chr2 242193529 + 178352117 178358238 L1PA6 6164 + 0 6161 2383 567 1 0 220 0 17 46 8 10 662 28 29 38 0 3 261 0 5 51 0 2 647 0 1 217 0 1 274 0 1 9 4 3 379 0 1 1527 0 1 332 7 12 655 0 2 188 chain 21059 chr2 242193529 + 178384967 178385234 L1PA7 6471 + 6192 6459 55048 115 0 7 7 12 5 133 chain 16984 chr2 242193529 + 178407394 178407628 MER30 238 + 0 238 59825 80 1 0 28 2 10 71 3 0 49 chain 26225 chr2 242193529 + 178446738 178447017 AluYa5 310 + 27 306 47383 279 chain 41301 chr2 242193529 + 178462410 178462941 LTR17 781 + 255 781 33787 20 7 10 23 10 0 19 0 1 386 3 0 5 0 3 51 0 1 7 chain 25664 chr2 242193529 + 178463224 178463544 LTR17 781 + 5 326 48223 114 0 9 151 0 2 18 10 0 27 chain 6481 chr2 242193529 + 178466508 178466740 MER33 330 + 6 254 79404 58 116 147 7 15 0 36 chain 2621 chr2 242193529 + 178517418 178517530 MER5A1 166 + 55 165 102877 23 70 68 19 chain 7299 chr2 242193529 + 178521651 178521797 MER44A 345 + 78 237 76670 20 16 22 37 5 21 26 9 0 33 chain 122848 chr2 242193529 + 178655054 178656454 L1PA4 6152 + 3759 5176 15047 734 0 4 228 5 17 84 0 1 349 chain 205667 chr2 242193529 + 178659314 178661675 L1PA4 6152 + 3759 6143 9513 734 0 4 228 5 17 84 0 1 471 0 4 736 0 1 57 0 1 46 chain 5926 chr2 242193529 + 178676203 178676282 MADE1 96 + 0 96 81376 30 0 17 49 chain 16433 chr2 242193529 + 178809212 178809460 MLT2A1 477 + 218 477 60469 167 10 0 10 6 0 6 7 29 6 0 1 30 0 4 6 chain 69872 chr2 242193529 + 178821645 178822419 L1PA5 6144 + 5370 6144 24023 198 0 2 565 2 0 9 chain 234479 chr2 242193529 + 178901168 178903762 L1PA3long 6157 + 3556 6153 8619 737 0 2 1530 0 1 327 chain 9085 chr2 242193529 + 178942327 178942645 L1MC1 2226 + 1895 2174 72370 22 10 10 28 42 38 53 1 0 4 106 75 4 1 0 6 1 0 17 1 0 22 chain 23307 chr2 242193529 + 178959034 178959303 L1PA5 6144 + 5875 6142 51919 260 2 0 7 chain 511826 chr2 242193529 + 178965327 178972086 L1PA7 6471 + 0 6468 2670 237 19 29 135 16 14 7 0 1 50 1 0 104 3 0 165 10 15 344 9 6 5 0 3 137 22 41 169 0 1 98 1 0 201 0 1 5 1 0 309 0 13 424 5 7 143 0 2 13 0 1 865 1 5 104 3 4 171 19 0 108 5 4 4 0 1 62 0 1 8 29 6 638 7 11 277 0 1 293 4 5 263 0 2 104 303 0 489 4 0 210 5 6 135 5 1 10 chain 540395 chr2 242193529 + 178982453 178988478 L1PA3long 6157 + 0 6157 1315 153 0 1 210 0 1 403 8 136 2879 0 1 2368 0 1 4 chain 369764 chr2 242193529 + 179009752 179016297 L1PB1 5432 + 402 5387 5665 55 0 3 209 4 5 179 0 1 4 1 0 121 3 4 317 0 3 92 1 0 7 2 0 5 25 11 68 0 1 29 305 0 85 5 10 245 0 3 31 5 1 307 1 4 217 0 4 72 9 1 200 0 5 41 1 0 193 0 4 789 1 4 20 0 1 275 313 0 91 0 1 18 8 13 111 0 1 365 3 0 58 0 1 4 1 0 12 0 2 89 9 0 10 3 11 231 0 1 5 1 0 42 937 12 8 1 0 24 1 0 9 5 4 7 4 0 9 2 0 50 3 2 18 2 1 39 1 0 4 1 0 15 1 0 4 17 8 19 28 23 20 1 0 17 chain 118040 chr2 242193529 + 179025631 179027174 THE1B-int 1605 + 0 1599 15879 179 3 4 51 0 1 9 0 28 158 1 26 133 6 7 433 1 0 4 9 10 404 0 1 6 3 2 143 chain 15286 chr2 242193529 + 179027680 179027871 THE1B 368 + 176 368 61930 151 1 2 39 chain 123651 chr2 242193529 + 179042648 179044384 L1PA10 4194 + 2364 4161 14909 98 1 0 61 0 4 18 7 6 90 11 10 8 1 0 6 2 0 9 1 0 373 0 1 32 0 19 51 1 8 97 7 27 257 0 15 55 1 12 18 9 13 27 23 13 424 4 1 44 chain 6351 chr2 242193529 + 179045759 179045829 L1PA3long 6157 + 5321 5391 79835 70 chain 427242 chr2 242193529 + 179075606 179081508 L1PA7 6471 + 3 6466 4785 246 13 14 148 2 0 1347 0 10 230 0 1 175 1 0 169 0 11 13 8 4 267 312 3 756 310 0 168 0 4 40 0 18 528 0 1151 232 0 1 5 1 2 75 1 0 15 18 8 822 chain 4467 chr2 242193529 + 179120253 179120304 MSTA 426 + 375 426 88510 51 chain 18128 chr2 242193529 + 179157109 179157450 L1PB 1623 + 1277 1585 58535 169 1 0 6 3 2 29 2 1 5 3 0 13 1 0 14 1 0 6 54 31 22 2 0 10 chain 529811 chr2 242193529 + 179195944 179201918 L1PA3long 6157 + 0 6142 1835 153 0 1 398 1 0 224 0 128 282 26 25 1181 0 4 48 0 1 817 0 1 754 0 31 306 0 4 1784 chain 19214 chr2 242193529 + 179203039 179203334 MER83B 357 + 0 316 57334 38 15 32 63 13 18 9 2 1 155 chain 508055 chr2 242193529 + 179212027 179218136 L1PA6 6164 + 0 6159 2844 355 0 1 116 3 11 84 1 0 125 0 1 94 0 17 809 0 1 157 12 30 532 0 1 91 16 6 115 0 3 974 1 0 22 0 1 149 2 1 93 1 2 185 0 2 41 0 2 311 1 2 31 1 5 40 0 2 172 1 0 96 1 0 638 0 4 171 0 1 12 0 2 129 16 13 504 2 0 5 chain 10920 chr2 242193529 + 179279964 179280086 AluYb8 318 + 196 318 68669 122 chain 94324 chr2 242193529 + 179280378 179281709 L1MA2 4263 + 176 1530 18995 157 10 8 4 0 1 44 0 20 73 7 3 11 1 2 113 14 4 391 0 12 104 0 1 134 0 1 57 1 2 44 14 15 9 2 0 7 5 7 31 0 1 98 chain 458847 chr2 242193529 + 179314496 179320727 L1PA5 6144 + 0 5336 4159 702 1 0 467 9 0 539 0 1 78 0 1 1465 0 2 131 0 1 817 3 1 224 892 0 864 1 5 38 chain 16216 chr2 242193529 + 179325728 179325897 AluYa5 310 + 141 310 60720 169 chain 548717 chr2 242193529 + 179385758 179391890 L1PA3long 6157 + 0 6142 825 1889 0 4 804 1 0 23 0 1 545 0 2 493 0 2 1155 0 1 99 5 6 1118 chain 24769 chr2 242193529 + 179403391 179403686 L1PA7 6471 + 6171 6466 49634 295 chain 173177 chr2 242193529 + 179449351 179451256 L1PA4 6152 + 4239 6152 10943 1052 0 3 847 0 5 6 chain 25951 chr2 242193529 + 179458134 179458471 THE1B 368 + 0 368 47790 27 0 1 16 0 15 116 1 0 145 0 16 32 chain 4367 chr2 242193529 + 179469118 179469180 MER41B 635 + 482 548 89073 30 5 9 27 chain 3974 chr2 242193529 + 179474330 179474381 MADE1 96 + 3 70 91613 43 0 16 8 chain 62749 chr2 242193529 + 179495798 179496766 L1M1 2793 + 754 1725 25694 11 3 1 6 2 0 30 1 0 29 2 0 8 1 0 22 1 2 25 25 29 57 0 2 5 25 38 158 1 0 71 5 1 20 9 0 32 1 0 147 0 1 27 0 1 53 0 5 136 1 0 54 chain 54826 chr2 242193529 + 179500000 179500935 L1MA1 4479 + 3247 4190 27938 4 1 0 12 4 0 66 26 28 30 8 6 83 0 18 25 2 0 100 2 0 14 0 19 61 9 8 18 2 0 16 1 0 71 1 0 9 0 1 9 2 0 14 1 0 59 2 1 28 12 8 72 0 3 12 5 8 28 1 0 30 2 0 34 1 0 9 1 0 10 20 11 18 chain 23745 chr2 242193529 + 179607220 179607584 THE1D 372 + 0 370 51206 101 8 7 52 54 64 19 3 0 127 chain 469088 chr2 242193529 + 179629553 179635534 L1PA6 6164 + 6 6156 3884 231 0 2 279 0 2 47 1 0 240 5 23 188 2 3 165 0 3 873 1 0 128 1 3 140 29 6 151 13 6 1405 0 1 347 15 511 288 2 1 118 0 5 4 0 1 138 0 1 478 331 0 196 1 3 17 1 0 146 chain 7564 chr2 242193529 + 179679269 179679380 Tigger3c 601 + 487 601 75952 44 8 11 59 chain 34169 chr2 242193529 + 179697804 179698191 L1PA5 6144 + 5747 6144 38583 329 0 10 58 chain 18834 chr2 242193529 + 179708113 179708442 THE1D 372 + 0 372 57734 41 16 7 88 8 40 12 8 7 37 15 37 71 2 1 31 chain 10332 chr2 242193529 + 179713050 179713183 MER47B 469 + 286 416 69730 6 3 0 124 chain 110328 chr2 242193529 + 179734820 179736039 L1PA2 6032 + 4807 6030 17029 1155 8 12 56 chain 132254 chr2 242193529 + 179781670 179783539 L1PA14 3548 + 1630 3456 13801 22 11 2 133 20 13 159 15 13 10 1 0 329 0 1 177 0 2 198 2 0 249 3 1 14 2 0 47 2 0 5 2 0 35 1 2 69 4 0 20 2 0 6 1 0 84 1 0 111 1 0 10 5 1 36 4 2 12 7 5 17 1 0 41 chain 10276 chr2 242193529 + 179829375 179829506 L1MC2 1988 + 639 770 69853 131 chain 5467 chr2 242193529 + 179864003 179864084 L1PB1 5432 + 5346 5423 83369 24 1 0 21 1 0 13 1 0 9 1 0 10 chain 82755 chr2 242193529 + 179888223 179889347 MER11A 1151 + 0 1142 21073 79 1 9 142 2 1 51 6 12 22 34 0 72 0 1 54 0 1 111 5 4 123 6 9 12 1 2 38 0 4 115 3 0 5 0 35 96 1 0 87 1 0 57 chain 13709 chr2 242193529 + 179958478 179958668 MER30 238 + 30 238 64005 67 0 3 11 5 14 27 0 6 80 chain 31993 chr2 242193529 + 180008372 180008950 MLT2A1 477 + 1 469 40351 141 0 1 20 6 10 151 1 0 61 5 41 9 150 0 34 chain 7248 chr2 242193529 + 180041723 180041874 MER21C 908 + 27 190 76821 17 50 62 84 chain 32527 chr2 242193529 + 180047384 180047854 L1PB 1623 + 1060 1514 39925 231 15 9 146 1 0 6 1 0 32 10 6 11 5 1 12 chain 219406 chr2 242193529 + 180052480 180055127 L1PA7 6471 + 3820 6466 9056 15 1 2 128 0 1 40 0 4 306 0 3 484 0 2 689 12 0 4 0 1 15 1 2 98 0 3 13 0 1 109 0 1 339 6 0 94 0 1 7 5 3 281 chain 3545 chr2 242193529 + 180056517 180056559 LTR14B 630 + 0 42 94904 42 chain 122320 chr2 242193529 + 180058505 180060250 HERV17-int 4347 + 12 3880 15139 15 1 0 50 2 1 35 2 0 18 9 8 107 1 0 19 1 6 47 0 1 14 0 431 19 0 1 23 6 10 74 0 5 15 2 0 63 1 0 28 0 4 30 0 2 79 4 3 16 2 0 8 1 0 19 12 9 53 0 3 45 0 2 78 0 1 20 1 0 102 0 2 81 2 0 68 24 17 43 13 12 74 0 9 153 0 4 68 16 20 33 0 1672 148 chain 4821 chr2 242193529 + 180172547 180172631 L1PB1 5432 + 5349 5427 86594 21 1 0 14 2 1 6 1 0 13 1 0 18 2 0 5 chain 12411 chr2 242193529 + 180231522 180231665 MLT2A1 477 + 4 147 66118 143 chain 128312 chr2 242193529 + 180233124 180234675 L1PA5 6144 + 4583 6143 14243 325 0 1 4 1 0 231 1 2 116 14 14 20 0 3 23 0 2 486 0 1 171 20 22 139 chain 202635 chr2 242193529 + 180235114 180238191 HERV17-int 4347 + 12 2906 9613 14 6 5 47 1 0 35 2 0 4 1 0 22 1 0 163 14 7 26 17 447 564 6 1 121 7 0 680 592 0 116 0 3 275 0 1 363 chain 50477 chr2 242193529 + 180236851 180237437 LTR14C 587 + 0 587 29384 310 0 1 276 chain 36966 chr2 242193529 + 180277852 180278264 L1PA5 6144 + 5732 6144 36760 412 chain 83308 chr2 242193529 + 180302074 180303012 L1PA3long 6157 + 5219 6157 20962 938 chain 13378 chr2 242193529 + 180316129 180316389 MSTA 426 + 163 426 64497 53 34 0 10 24 52 22 0 5 8 5 8 46 0 1 58 chain 42028 chr2 242193529 + 180320375 180320880 MER9a2 513 + 2 513 33343 56 0 1 257 0 5 192 chain 241745 chr2 242193529 + 180337431 180340767 MER61-int 3695 + 1 3345 8434 29 4 0 16 1 0 226 1 0 85 0 4 49 1 2 61 1 0 64 7 6 60 0 20 9 7 5 267 9 16 80 16 7 243 0 1 183 1 0 107 2 0 78 0 5 379 12 18 110 2 1 249 13 3 200 7 8 156 7 6 14 1 0 94 1 0 33 7 6 157 11 13 49 3 0 31 2 1 166 0 1 12 1 2 12 chain 32801 chr2 242193529 + 180458318 180458674 L1PA3long 6157 + 5790 6146 39668 356 chain 5403 chr2 242193529 + 180523176 180523371 Tigger4a 237 + 37 139 83697 59 116 23 20 chain 11185 chr2 242193529 + 180537173 180537302 L1PA5 6144 + 6006 6135 68271 129 chain 128139 chr2 242193529 + 180556011 180557996 L1PA10 4194 + 175 2081 14260 14 9 0 10 3 0 8 2 0 9 11 7 9 2 0 5 19 17 16 3 1 15 1 0 8 155 120 49 1 0 25 4 2 396 2 1 230 1 2 37 4 0 12 0 1 159 18 7 119 11 6 186 0 2 248 4 5 180 chain 5189 chr2 242193529 + 180581315 180581372 L1P1 4361 + 2492 2549 84729 57 chain 5316 chr2 242193529 + 180617121 180617194 MADE1 96 + 3 92 84110 39 1 17 33 chain 105550 chr2 242193529 + 180640901 180642053 L1PA3long 6157 + 5005 6157 17614 1152 chain 104783 chr2 242193529 + 180691204 180692425 LTR12C 1709 + 0 1709 17714 650 0 485 89 0 4 399 1 0 82 chain 8352 chr2 242193529 + 180713380 180713479 L1PREC2 3366 + 1487 1586 74022 99 chain 18528 chr2 242193529 + 180716120 180716481 THE1B 368 + 2 368 58074 106 26 27 42 58 63 66 17 16 46 chain 355242 chr2 242193529 + 180765109 180769319 L1P2 5180 + 4 4234 5853 141 16 15 33 2 1 53 1 0 267 0 1 48 1 0 224 1 0 6 1 0 1534 2 0 254 0 3 324 1 25 555 1 0 455 1 2 289 chain 67530 chr2 242193529 + 180785892 180786656 L1PA4 6152 + 5384 6152 24556 618 1 0 139 0 5 6 chain 84993 chr2 242193529 + 180831855 180832801 L1PA3long 6157 + 3822 4772 20618 540 0 4 406 chain 27655 chr2 242193529 + 180926470 180926870 MLT2A1 477 + 0 385 45390 82 1 2 58 0 1 22 4 8 22 31 11 113 5 4 62 chain 33495 chr2 242193529 + 180964772 180965218 THE1-int 844 + 389 826 39093 66 15 14 235 5 0 68 2 0 34 1 0 20 chain 9495 chr2 242193529 + 180991598 180991768 MER30 238 + 62 238 71487 29 0 3 14 17 23 56 18 15 36 chain 168827 chr2 242193529 + 181032788 181034684 L1PA5 6144 + 4237 6141 11162 106 2 6 948 0 4 840 chain 13659 chr2 242193529 + 181052264 181052463 MER107 203 + 0 203 64069 39 2 0 43 0 1 73 15 20 27 chain 527226 chr2 242193529 + 181088926 181095379 L1PA7 6471 + 3 6469 1946 194 0 1 43 2 3 42 2 3 400 7 10 1308 0 1 27 1 0 605 0 10 446 0 4 134 4 0 7 20 24 270 13 0 80 3 1 7 0 1 133 0 1 77 0 1 173 1 0 244 7 8 56 0 2 166 0 1 88 1 0 4 0 1 616 0 4 173 0 1 246 1 0 8 0 1 345 6 5 483 2 0 8 chain 32143 chr2 242193529 + 181128851 181129222 L1PA6 6164 + 5782 6162 40234 337 0 9 34 chain 107502 chr2 242193529 + 181181550 181182714 L1PA3long 6157 + 4993 6157 17386 1164 chain 6614 chr2 242193529 + 181184509 181184649 MLT1A1 405 + 0 153 78926 16 35 49 67 2 1 20 chain 44593 chr2 242193529 + 181299896 181300420 L1PA7 6471 + 5797 6322 31790 516 0 1 8 chain 10289 chr2 242193529 + 181300420 181300543 L1PA7 6471 + 6348 6470 69826 118 1 0 4 chain 46313 chr2 242193529 + 181328544 181329415 L1PA14 3548 + 2619 3452 30918 46 27 27 46 14 16 27 0 2 154 4 2 14 2 0 47 9 5 41 7 8 56 14 13 8 2 0 6 1 0 77 15 14 57 33 13 22 26 21 38 4 2 12 1 0 5 1 0 17 1 0 37 chain 147142 chr2 242193529 + 181346196 181347805 L1PA3long 6157 + 4535 6144 12536 1609 chain 470780 chr2 242193529 + 181410959 181417238 L1PA8A 6298 + 79 6287 3836 22 3 0 18 19 10 18 2 1 9 2 1 11 2 1 7 0 1 11 2 0 15 2 0 4 1 0 12 47 38 7 1 0 43 2 0 23 6 0 77 2 0 18 1 0 5 6 4 58 0 3 91 16 15 139 0 1 4 17 20 6 0 1 354 12 0 14 1 0 7 1 2 72 13 2 32 6 9 83 0 3 56 0 1 84 1 0 46 24 23 4 0 1 312 17 4 335 0 1 185 2 1 106 33 27 221 5 9 366 29 13 6 4 0 239 6 1 42 2 0 5 7 10 26 1 0 26 0 6 307 1 0 64 0 1 192 1 0 414 0 13 113 0 1 40 0 2 197 0 1 637 1 4 328 1 0 65 1 0 5 6 3 293 1 2 98 chain 61462 chr2 242193529 + 181469381 181470075 L1PA5 6144 + 5450 6144 25996 153 1 0 146 0 1 394 chain 29035 chr2 242193529 + 181491256 181491564 AluYg6 310 + 1 309 43271 308 chain 11558 chr2 242193529 + 181551339 181551474 L1PA8A 6298 + 5354 5489 67646 135 chain 16506 chr2 242193529 + 181551480 181551701 L1PA8A 6298 + 5499 5731 60362 81 8 7 37 6 18 89 chain 28945 chr2 242193529 + 181561426 181561793 MER4D 903 + 187 556 43412 26 0 2 341 chain 83707 chr2 242193529 + 181664050 181664979 L1PA3long 6157 + 5218 6152 20870 89 0 1 238 0 4 602 chain 26189 chr2 242193529 + 181711063 181711405 THE1A 353 + 0 341 47445 15 3 1 31 0 1 46 1 0 69 0 1 177 chain 120082 chr2 242193529 + 181711417 181712981 THE1A-int 1579 + 0 1579 15527 36 0 1 41 0 1 53 0 1 283 23 26 60 2 1 411 3 13 191 2 0 191 0 1 201 4 5 63 chain 514311 chr2 242193529 + 181731653 181737828 L1PA6 6164 + 0 6162 2553 411 1 0 5 10 11 32 7 6 503 16 1 542 41 45 485 0 1 217 1 2 576 1 0 348 1 0 4 0 1 1499 0 3 39 0 3 457 4 1 420 0 2 538 7 0 10 chain 15785 chr2 242193529 + 182120315 182120489 L1P1 4361 + 3140 3314 61303 174 chain 547916 chr2 242193529 + 182212405 182218421 L1PA3long 6157 + 0 6149 869 72 0 1 79 0 1 624 1 129 343 1 0 601 0 4 4295 chain 5274 chr2 242193529 + 182264805 182264865 L1PB2 3958 + 3778 3838 84314 60 chain 88358 chr2 242193529 + 182276274 182277398 MER11A 1151 + 7 1151 19975 199 1 3 85 0 11 83 0 1 450 16 23 33 1 0 76 0 1 113 8 7 59 chain 319120 chr2 242193529 + 182332735 182336765 L1PA7 6471 + 2423 6457 6423 93 0 42 75 4 0 38 0 1 682 0 1 631 65 20 775 0 10 363 1 0 250 1 2 215 1 0 836 chain 13652 chr2 242193529 + 182336785 182336960 L1PA8A 6298 + 6115 6291 64086 68 6 7 101 chain 38888 chr2 242193529 + 182356745 182357187 L1PA5 6144 + 5698 6140 35439 442 chain 130878 chr2 242193529 + 182385830 182387427 SVA_C 1631 + 16 1624 13940 6 2 0 14 3 5 11 12 0 147 0 7 47 0 8 586 62 23 9 0 1 27 0 45 52 0 1 619 chain 2530 chr2 242193529 + 182386658 182386720 SVA_C 1631 + 767 829 65263 62 chain 174311 chr2 242193529 + 182394506 182396841 HERVL-int 5654 + 1894 5654 10881 11 0 2 53 0 1 31 8 7 22 9 10 178 0 1 135 34 35 392 0 2 173 0 29 58 17 18 24 1 24 500 1 15 92 1 2 5 1 0 192 0 1354 8 0 1 160 4 0 225 chain 184510 chr2 242193529 + 182401065 182403317 L1PA7 6471 + 3850 6105 10363 167 2 3 67 0 1 314 4 0 205 0 2 160 0 1 179 1 0 366 3 1 276 1 2 106 0 2 7 4 5 342 0 1 48 chain 92682 chr2 242193529 + 182430116 182431117 L1HS 6032 + 5026 6030 19239 5 0 2 846 0 1 150 chain 28249 chr2 242193529 + 182451096 182451399 AluYa5 310 + 0 302 44487 132 1 0 170 chain 194156 chr2 242193529 + 182453481 182455649 L1PA4 6152 + 3702 5883 9917 1335 0 1 53 0 12 780 chain 32351 chr2 242193529 + 182537271 182537656 L1PA7 6471 + 6083 6468 40078 385 chain 67243 chr2 242193529 + 182552526 182553308 LTR17 781 + 0 781 24638 121 0 9 169 10 0 28 0 1 164 1 0 289 chain 4330 chr2 242193529 + 182575644 182575694 HERVL-int 5654 + 4848 4899 89293 21 0 1 29 chain 96183 chr2 242193529 + 182608314 182609753 LTR12C 1709 + 0 1709 18754 12 9 30 22 15 31 167 0 1 15 12 24 36 0 43 78 26 33 112 5 6 40 0 119 68 1 0 156 0 2 76 0 47 90 24 0 16 11 4 62 30 31 258 14 46 84 chain 464215 chr2 242193529 + 182686554 182691878 L1PA5 6144 + 3 5336 4014 57 0 1 417 5 1 585 0 1 122 0 3 152 0 1 1030 0 1 911 1 0 435 0 1 567 0 1 992 0 1 12 1 5 37 chain 3927 chr2 242193529 + 182740800 182740873 MADE1 96 - 8 96 91933 27 9 24 37 chain 4945 chr2 242193529 + 182853894 182854082 L1ME3A 1206 + 945 1135 85908 48 100 109 13 7 0 20 chain 7857 chr2 242193529 + 182873853 182873947 U6 107 + 13 107 75235 94 chain 437126 chr2 242193529 + 182873950 182880623 L1PA7 6471 + 1235 6466 4618 201 15 12 45 1449 0 1148 19 5 41 0 4 793 9 8 509 1 0 331 0 15 243 0 1 363 0 1 552 0 3 113 0 4 668 17 15 156 chain 58276 chr2 242193529 + 182874226 182874869 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482 + 0 474 56868 23 13 36 42 15 14 17 0 51 41 5 37 46 0 1 47 22 23 41 13 14 41 chain 29469 chr2 242193529 + 183167012 183167559 MLT2A1 477 + 0 476 42644 13 0 4 125 0 1 26 1 5 20 5 12 33 15 8 138 104 28 10 3 0 35 1 0 18 chain 6549 chr2 242193529 + 183188089 183188166 MER50B 698 + 573 652 79164 44 0 2 33 chain 42018 chr2 242193529 + 183205662 183206196 MLT2A2 560 + 4 560 33347 166 0 1 225 0 17 87 1 0 4 0 1 41 0 4 10 chain 40218 chr2 242193529 + 183208435 183208975 MER41A 554 + 0 554 34511 247 1 2 22 0 2 105 29 33 16 0 1 40 0 5 72 0 1 8 chain 8791 chr2 242193529 + 183216670 183216811 MER65A 464 + 189 329 73009 38 22 20 61 0 1 20 chain 15814 chr2 242193529 + 183259236 183259585 THE1B 368 + 7 368 61266 57 1 4 40 8 9 52 68 74 59 12 11 19 15 18 18 chain 57958 chr2 242193529 + 183262271 183262921 L1PA5 6144 + 4730 5384 26975 254 0 4 396 chain 159975 chr2 242193529 + 183324328 183326370 L1P2 5180 + 1658 4424 11757 95 0 4 38 11 10 513 3 1 62 1 0 4 0 1 190 0 4 206 0 4 210 0 718 183 9 1 344 5 6 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1 0 693 0 7 132 3 0 6 chain 28041 chr2 242193529 + 183658183 183658538 THE1A 353 + 0 353 44798 88 1 0 21 2 1 243 chain 15953 chr2 242193529 + 183670690 183670875 L1PA2 6032 + 5848 6026 61086 27 7 0 151 chain 4356 chr2 242193529 + 183682921 183683097 MLT1D 503 + 12 174 89133 10 1 0 12 10 11 23 88 74 32 chain 21784 chr2 242193529 + 183684196 183684452 L1PA8 5853 + 5266 5522 54114 256 chain 22903 chr2 242193529 + 183684456 183684791 L1PA8 5853 + 5525 5853 52507 39 1 0 44 2 0 69 5 4 7 1 0 52 2 1 14 6 5 93 chain 15224 chr2 242193529 + 183707713 183708064 THE1B 368 + 9 366 62010 98 31 32 38 67 72 11 16 17 29 7 6 54 chain 5369 chr2 242193529 + 183723536 183723622 L1PB1 5432 + 5338 5420 83850 8 2 0 45 1 0 13 1 0 16 chain 158378 chr2 242193529 + 183741247 183742999 L1PA3long 6157 + 4247 6003 11849 1065 0 4 687 chain 13572 chr2 242193529 + 183743006 183743159 L1PA3long 6157 + 6003 6157 64215 146 0 1 7 chain 128553 chr2 242193529 + 183755140 183757159 L1PB2 3958 + 1750 3794 14213 11 11 10 146 1 2 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105179 chr2 242193529 + 184281858 184283227 L1PA7 6471 + 5089 6470 17664 49 0 1 158 0 1 174 0 1 150 13 10 82 0 1 134 12 17 234 0 2 7 2 0 27 4 6 149 0 1 31 2 1 46 11 15 84 chain 84928 chr2 242193529 + 184284645 184285742 L1PA7 6471 + 4217 5304 20635 264 2 6 320 3 0 122 4 1 219 4 6 5 2 0 106 3 1 10 6 0 27 chain 5755 chr2 242193529 + 184324730 184324831 MER5A 189 + 36 136 82109 39 21 20 41 chain 49076 chr2 242193529 + 184351424 184352171 L1PB 1623 + 117 875 29919 54 4 1 15 1 0 4 2 0 50 2 5 23 1 0 124 7 6 14 3 0 52 1 4 16 2 1 14 22 19 5 0 3 57 0 1 181 1 17 92 chain 52648 chr2 242193529 + 184396319 184396979 L1PA8A 6298 + 5598 6277 28685 270 0 2 46 0 2 110 0 14 141 2 5 5 2 0 84 chain 69014 chr2 242193529 + 184406623 184407671 MER11A 1151 + 0 1151 24208 43 12 111 45 2 0 31 86 1 61 0 11 228 0 13 127 17 20 12 1 2 38 0 4 87 1 59 93 10 12 87 1 0 66 chain 13768 chr2 242193529 + 184459824 184460118 Tigger3b 1229 + 225 550 63925 62 0 4 7 8 31 34 63 66 81 17 18 22 chain 46037 chr2 242193529 + 184491414 184492236 L1PA15 4387 + 3583 4345 31044 89 5 4 22 3 4 111 2 0 12 35 6 60 3 1 18 2 0 21 2 1 139 3 0 33 1 0 15 17 16 49 2 1 14 6 0 5 0 2 11 1 0 45 11 8 19 1 2 22 2 0 12 13 4 16 chain 68675 chr2 242193529 + 184495066 184496121 L1PA11 4918 + 3546 4578 24292 119 5 9 11 27 12 167 2 0 5 6 8 102 10 16 333 5 0 9 3 12 44 2 1 13 2 0 67 2 0 14 1 0 15 51 38 13 1 0 13 2 0 11 chain 94333 chr2 242193529 + 184497766 184498813 L1PA3long 6157 + 5110 6157 18994 267 0 1 520 1 0 259 chain 5907 chr2 242193529 + 184503234 184503348 L1MA5A 2387 + 2050 2161 81458 11 3 0 7 17 19 68 2 0 6 chain 45972 chr2 242193529 + 184503386 184503930 L1P1 4361 + 3750 4292 31070 144 1 0 257 1 0 141 chain 67850 chr2 242193529 + 184542243 184543032 L1PA3long 6157 + 5399 6157 24483 205 32 1 552 chain 69834 chr2 242193529 + 184560989 184562281 HERVL-int 5654 + 4638 5625 24037 190 6 9 65 2 1 309 7 8 141 308 2 66 4 0 73 27 30 89 1 0 4 chain 38871 chr2 242193529 + 184562311 184562855 MLT2A2 560 + 4 560 35453 197 37 38 167 0 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242193529 + 184903340 184903521 Tigger3a 397 + 139 320 62553 181 chain 120152 chr2 242193529 + 184949712 184950989 L1HS 6032 + 1808 3085 15514 1277 chain 44856 chr2 242193529 + 184975457 184975986 L1P1 4361 + 3815 4341 31662 335 1 0 154 2 1 23 2 1 12 chain 5457 chr2 242193529 + 185007495 185007605 L1MCb 1641 + 1441 1543 83416 41 35 27 34 chain 17293 chr2 242193529 + 185024425 185024664 L1PB1 5432 + 4654 4884 59470 89 10 1 140 chain 33454 chr2 242193529 + 185031123 185031504 L1PA4 6152 + 4425 4802 39125 210 3 0 24 1 0 143 chain 26961 chr2 242193529 + 185036575 185036878 AluYb8 318 + 13 314 46321 50 2 0 251 chain 96490 chr2 242193529 + 185059035 185060134 L1PA5 6144 + 3751 4853 18718 479 0 1 49 0 2 571 chain 14309 chr2 242193529 + 185089210 185089403 THE1B 368 + 176 368 63186 24 2 0 8 1 2 158 chain 33753 chr2 242193529 + 185089403 185089829 THE1B-int 1605 + 0 428 38885 70 0 1 71 4 5 281 chain 3448 chr2 242193529 + 185111152 185111262 L1MC3 1789 + 1295 1374 95666 16 3 0 9 28 15 32 15 0 7 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231 1 0 48 1 0 175 57 55 209 1082 0 262 2 0 83 0 1 1113 0 2 720 1 0 103 6 7 393 1 0 268 2 1 708 10 19 171 chain 30352 chr2 242193529 + 185367183 185367586 MLT2A1 477 + 0 403 41713 169 4 1 11 0 1 20 0 3 175 5 4 19 chain 235389 chr2 242193529 + 185377486 185380663 L1PA8 5853 + 2662 5849 8586 144 0 2 10 0 3 61 0 1 71 1 0 61 0 1 198 20 0 179 8 9 18 0 1 96 3 23 165 6 9 71 0 1 15 1 0 41 0 1 84 2 0 83 1 0 111 0 1 68 3 0 24 3 2 99 1 0 164 1 7 319 7 7 17 0 1 180 2 0 43 0 5 36 11 10 370 0 2 88 1 0 46 2 0 69 1 0 9 1 0 52 2 1 20 3 2 78 0 1 7 chain 30464 chr2 242193529 + 185428987 185429418 MLT2A1 477 + 15 477 41611 156 3 0 26 0 2 5 4 2 176 7 3 14 3 41 37 chain 17164 chr2 242193529 + 185434086 185434397 Tigger2a 444 + 72 395 59614 19 29 39 48 10 13 70 20 19 115 chain 6478 chr2 242193529 + 185448085 185448164 L1PB4 2604 + 2422 2501 79415 79 chain 9682 chr2 242193529 + 185461943 185462084 L1MA3 4352 + 4155 4288 71096 80 4 0 25 3 0 22 1 0 6 chain 24886 chr2 242193529 + 185500842 185501170 L1PA8 5853 + 5345 5670 49464 219 1 0 43 3 1 62 chain 3567 chr2 242193529 + 185501205 185501246 L1PA8 5853 + 5702 5743 94674 41 chain 7182 chr2 242193529 + 185501253 185501338 L1PA8 5853 + 5761 5847 76997 73 0 1 12 chain 118992 chr2 242193529 + 185522657 185524561 THE1A-int 1579 + 0 1574 15705 194 0 4 306 1 0 75 0 1 419 34 34 5 2 0 130 9 10 95 332 0 127 3 0 11 0 1 17 5 6 139 chain 19171 chr2 242193529 + 185552209 185552420 L1PA5 6144 + 5933 6144 57374 211 chain 2779 chr2 242193529 + 185602866 185602899 MER1B 344 - 109 143 101767 28 0 1 5 chain 21118 chr2 242193529 + 185612433 185612686 L1PA2 6032 + 5786 6032 54984 80 5 0 7 3 1 158 chain 38586 chr2 242193529 + 185629829 185630318 MER61-int 3695 + 1883 2390 35653 83 0 25 57 6 0 86 1 0 256 chain 15781 chr2 242193529 + 185677468 185677682 LTR8 732 + 39 269 61310 186 4 20 24 chain 4169 chr2 242193529 + 185696666 185696728 MLT2B2 565 + 5 68 90327 36 4 5 22 chain 15160 chr2 242193529 + 185727250 185727426 L1PA8 5853 + 5383 5559 62081 176 chain 74778 chr2 242193529 + 185765375 185767330 L1PA2 6032 + 4046 6031 22896 751 0 30 1039 5 0 7 0 5 153 chain 3263 chr2 242193529 + 185818007 185818091 L1MA3 4352 + 4225 4303 97347 5 2 0 4 1 0 26 2 0 11 18 17 15 chain 13024 chr2 242193529 + 185819718 185819884 MER47A 366 + 180 346 65083 166 chain 45406 chr2 242193529 + 185835524 185836128 MER11A 1151 + 0 699 31360 85 0 91 44 7 11 63 4 0 149 0 1 94 0 1 23 6 7 105 10 11 14 chain 94345 chr2 242193529 + 185849191 185850330 L1PA7 6471 + 3451 4588 18992 46 3 0 24 0 1 7 2 1 13 0 5 288 3 0 493 1 0 259 chain 553687 chr2 242193529 + 185864597 185870619 L1PA2 6032 + 0 6024 505 2118 0 1 833 0 1 3071 chain 168279 chr2 242193529 + 185883160 185885095 L1PA5 6144 + 3569 5509 11204 400 0 1 4 1 0 5 5 8 36 0 3 1141 1 2 97 1 0 28 1 0 215 chain 12832 chr2 242193529 + 185946455 185946628 MER2 342 + 103 284 65390 32 4 12 137 chain 3087 chr2 242193529 + 185948874 185948933 L1M3 994 + 32 87 98892 6 3 0 23 1 0 14 1 0 4 0 1 7 chain 18147 chr2 242193529 + 185972446 185972666 MSTA-int 1630 + 1403 1623 58510 220 chain 103246 chr2 242193529 + 185976370 185977528 L1PA3long 6157 + 4983 6149 17927 993 0 8 165 chain 109089 chr2 242193529 + 185989231 185990447 L1PA4 6152 + 4821 6047 17172 59 0 13 408 2 0 254 1 0 492 chain 45648 chr2 242193529 + 186007937 186008450 MER9a2 513 + 0 513 31236 513 chain 276858 chr2 242193529 + 186009625 186013418 L1PA10 4194 + 313 4082 7526 22 2 0 18 1 0 10 1 0 11 5 0 6 1 0 15 10 0 8 1 0 41 1 2 38 3 0 194 3 4 446 1 0 323 14 0 433 7 11 297 19 20 155 0 3 240 87 84 9 0 1 28 1 4 223 2 0 54 0 1 32 6 7 203 3 4 67 0 2 632 4 5 116 chain 121849 chr2 242193529 + 186025392 186026737 L1PA3long 6157 + 4807 6156 15209 497 0 4 848 chain 5917 chr2 242193529 + 186034554 186034654 MER5B 177 + 6 105 81412 34 18 17 48 chain 99941 chr2 242193529 + 186073337 186074555 L1PA8 5853 + 4639 5853 18307 260 1 0 109 0 5 464 1 0 87 1 0 44 2 0 71 1 0 9 7 0 6 0 6 40 2 1 19 1 0 93 chain 125154 chr2 242193529 + 186086760 186088257 L1PA7 6471 + 4955 6466 14677 671 0 3 71 0 2 694 0 9 61 chain 16841 chr2 242193529 + 186098354 186098608 Tigger1 2417 + 1778 2045 59985 11 5 9 19 3 7 144 0 3 51 8 10 13 chain 10841 chr2 242193529 + 186122067 186122255 L1MA3 4352 + 4106 4282 68793 7 3 0 85 0 4 12 10 3 18 4 0 25 2 0 22 chain 319543 chr2 242193529 + 186144284 186148391 L1PA8A 6298 + 2098 6270 6414 403 16 36 103 0 2 118 0 1 88 1 2 4 1 0 51 3 4 537 1 2 5 0 2 120 0 1 118 19 16 158 3 2 349 0 3 18 0 42 343 9 1 175 0 1 659 3 2 25 2 1 183 7 1 337 7 18 241 chain 9866 chr2 242193529 + 186162153 186162431 L1PA14 3548 + 3170 3433 70689 17 0 1 13 4 0 21 7 6 68 76 70 11 5 9 6 7 0 4 1 0 19 1 0 18 chain 27509 chr2 242193529 + 186168145 186168488 L1PA8 5853 + 5411 5748 45568 110 1 0 43 1 0 44 2 0 70 2 1 12 1 0 57 chain 27315 chr2 242193529 + 186173872 186174248 MLT2A1 477 + 4 385 45809 138 0 1 18 8 12 151 1 0 17 21 22 22 chain 9629 chr2 242193529 + 186190723 186190862 LTR45B 484 + 8 154 71199 56 14 21 69 chain 3790 chr2 242193529 + 186202248 186202297 L1M1 2793 + 2631 2679 92915 42 1 0 6 chain 510867 chr2 242193529 + 186230323 186236191 L1PA4 6152 + 1 5880 2726 314 2 1 144 6 0 120 1 0 727 0 1 101 0 1 43 0 4 1287 0 10 403 0 2 684 7 6 300 0 3 1076 1 0 652 chain 14662 chr2 242193529 + 186261177 186261355 Tigger1 2417 + 49 227 62721 178 chain 139733 chr2 242193529 + 186266950 186268620 L1PA7 6471 + 3134 4815 13116 338 4 9 22 1 0 68 1 2 644 0 2 60 0 3 348 0 1 184 chain 51218 chr2 242193529 + 186306444 186307183 MER4D1 891 + 0 753 29158 21 8 6 90 6 7 75 1 14 153 6 2 49 1 0 13 1 0 5 2 0 104 6 9 49 0 7 149 chain 3786 chr2 242193529 + 186312374 186312990 L1MA1 4479 + 236 847 23803 44 2 0 65 23 22 45 14 15 37 21 20 122 9 11 65 1 0 97 13 5 9 1 5 20 10 11 18 chain 506747 chr2 242193529 + 186313075 186318941 L1PA4 6152 + 83 6143 2905 15 0 217 146 7 8 763 0 1 713 1 0 605 9 0 951 0 4 103 0 2 668 24 0 1025 0 4 578 1 0 123 1 0 53 0 1 80 chain 61921 chr2 242193529 + 186320178 186320874 L1PA5 6144 + 5442 6142 25883 41 0 3 324 1 2 330 chain 6177 chr2 242193529 + 186322892 186323897 L1MA1 4479 + 3212 4185 23803 39 1 0 11 10 5 110 23 19 69 4 6 42 2 0 86 0 1 99 0 2 9 1 0 29 2 0 16 1 2 45 4 2 22 1 0 19 2 0 14 5 4 58 6 7 19 1 0 5 3 0 121 10 9 25 2 0 32 44 33 13 chain 26469 chr2 242193529 + 186370486 186370782 L1PA4 6152 + 4341 4637 47027 296 chain 136318 chr2 242193529 + 186370782 186372292 L1PA4 6152 + 4643 6152 13409 729 1 0 780 chain 78993 chr2 242193529 + 186375134 186376029 MER11D 897 + 0 897 21873 287 2 1 489 0 1 60 12 14 45 chain 16942 chr2 242193529 + 186402968 186403159 L1PA2 6032 + 5837 6028 59866 191 chain 18525 chr2 242193529 + 186427166 186427370 L1PA5 6144 + 5931 6135 58077 204 chain 166173 chr2 242193529 + 186472258 186474208 SVA_D 2077 + 7 2075 11326 11 0 37 853 0 133 52 2 0 90 98 0 169 0 49 44 1 0 630 chain 5717 chr2 242193529 + 186473266 186473364 SVA_D 2077 + 956 1056 39359 78 2 4 18 chain 206994 chr2 242193529 + 186475496 186477770 L1PA3long 6157 + 3881 6157 9465 783 2 1 645 0 4 647 1 0 196 chain 25287 chr2 242193529 + 186494680 186494972 L1PA5 6144 + 5844 6139 48803 147 4 7 141 chain 10157 chr2 242193529 + 186520916 186521052 LTR5B 1012 + 869 1012 70093 59 5 12 72 chain 4146 chr2 242193529 + 186521052 186521156 HERVK-int 6823 + 0 100 90485 5 1 0 12 4 2 19 13 12 12 1 0 10 1 2 26 chain 23150 chr2 242193529 + 186521158 186521438 HERVK-int 6823 + 5433 5710 52142 81 1 0 14 1 0 108 1 0 74 chain 64710 chr2 242193529 + 186521528 186522372 LTR5_Hs 974 + 0 884 25263 84 15 18 67 5 10 279 1 33 18 1 0 138 9 10 227 chain 65697 chr2 242193529 + 186563677 186564656 L1MA3 4352 + 46 1033 25033 49 1 12 49 1 0 4 15 7 34 1 0 136 0 1 23 6 7 124 9 13 116 7 8 38 0 1 105 2 0 85 6 5 11 1 0 8 9 12 139 chain 23090 chr2 242193529 + 186773402 186774307 L1PB1 5432 + 4885 5412 52226 110 1 2 4 1 0 54 18 22 17 370 14 6 3 0 24 1 0 6 1 0 12 20 14 49 1 0 12 6 5 30 47 42 18 8 6 14 15 12 12 1 0 22 1 0 12 1 0 8 chain 9274 chr2 242193529 + 186781362 186781486 MER30 238 + 117 238 71963 6 2 0 16 2 0 70 0 1 28 chain 316085 chr2 242193529 + 186786272 186790872 L1PA11 4918 + 9 4567 6481 7 0 2 24 2 0 36 2 0 6 2 1 30 1 0 13 2 0 52 1 0 33 2 0 5 2 1 231 2 6 366 0 2 26 25 9 177 0 3 5 5 6 185 6 8 54 1 3 47 0 1 66 0 1 10 4 5 170 0 4 88 12 12 23 0 3 83 4 1 303 0 1 25 0 3 55 2 3 4 1 0 24 1 0 5 0 4 4 6 0 5 0 9 23 0 3 165 1 17 76 0 1 68 75 3 88 5 8 40 0 1 18 0 1 182 0 21 19 0 1 37 0 1 29 9 11 196 4 1 68 2 1 178 26 0 8 0 4 278 0 12 12 0 1 252 0 1 146 7 6 58 16 20 11 0 2 4 0 1 26 6 7 23 22 19 67 2 0 13 2 1 14 27 18 10 14 10 14 1 0 13 chain 497705 chr2 242193529 + 186792716 186799066 L1PA7 6471 + 0 6424 3216 241 0 8 159 24 28 527 1 4 161 7 21 60 1 0 38 0 2 29 70 68 283 0 4 485 0 1 513 0 2 79 0 8 6 0 1 17 1 4 98 0 3 252 0 2 181 2 0 211 11 11 86 2 1 242 1 0 196 0 1 75 3 4 245 0 2 315 0 4 181 5 6 411 0 1 150 0 1 406 1 3 173 0 2 92 0 9 23 0 1 222 0 1 64 chain 487597 chr2 242193529 + 186811784 186818267 L1PA7 6471 + 16 6464 3477 146 11 10 230 16 0 9 3 0 269 2 11 44 5 4 42 3 1 40 14 235 151 6 10 63 1 2 110 1 0 253 1 0 278 1 2 234 0 5 267 0 1 52 1 0 35 0 4 115 0 2 64 0 3 178 0 4 298 6 0 9 6 8 107 4 5 203 0 1 7 6 3 230 0 26 26 0 4 9 1 2 212 16 15 362 1 0 143 0 1 46 1 3 64 0 4 54 0 1 129 0 1 176 2 6 232 0 1 92 0 1 149 0 11 93 0 4 49 319 0 23 0 2 365 0 1 239 7 4 81 5 6 66 chain 17222 chr2 242193529 + 186825537 186825755 L1PA11 4918 + 3902 4120 59556 218 chain 27786 chr2 242193529 + 186825769 186826228 L1PA11 4918 + 4144 4578 45200 123 1 5 59 16 4 60 1 0 79 2 0 12 3 2 20 4 0 9 31 22 5 0 3 7 1 0 13 2 0 11 chain 48646 chr2 242193529 + 186831501 186832035 L1PA4 6152 + 5617 6152 30069 384 0 1 150 chain 71452 chr2 242193529 + 186922574 186923352 L1PA2 6032 + 5255 6032 23663 627 1 0 150 chain 138927 chr2 242193529 + 186989535 186991297 L1P2 5180 + 1353 3114 13196 25 0 2 99 1 0 81 0 1 659 20 13 25 4 6 54 0 1 4 2 0 5 0 2 245 0 4 257 1 2 24 5 0 148 0 1 103 chain 15419 chr2 242193529 + 187067542 187067801 L1PA14 3548 + 3221 3465 61759 110 1 0 11 5 1 36 4 2 12 1 0 3 1 0 19 1 0 6 0 1 36 6 0 7 chain 15346 chr2 242193529 + 187082390 187082577 L1PA7 6471 + 6280 6468 61858 109 0 1 78 chain 12950 chr2 242193529 + 187131763 187131908 L1PA7 6471 + 6039 6184 65179 145 chain 23104 chr2 242193529 + 187131921 187132192 L1PA7 6471 + 6192 6461 52203 260 2 0 9 chain 14668 chr2 242193529 + 187220334 187220509 L1P2 5180 + 1011 1188 62711 129 0 2 46 chain 19885 chr2 242193529 + 187223064 187223437 THE1C 375 + 0 375 56554 15 2 0 32 10 7 14 45 46 27 8 12 85 10 13 98 1 0 26 chain 117457 chr2 242193529 + 187225748 187227264 HERVL-int 5654 + 1895 3417 15980 84 1 0 4 0 1 162 2 0 350 0 3 49 3 1 39 1 2 190 33 37 70 0 1 360 0 1 168 chain 26050 chr2 242193529 + 187307074 187307436 THE1B 368 + 2 368 47658 167 1 0 21 7 10 9 1 5 18 1 0 10 1 0 109 0 1 4 1 0 12 chain 6383 chr2 242193529 + 187342799 187342935 LTR37A 408 + 266 387 79738 18 6 7 49 2 0 5 1 3 31 16 0 8 chain 28501 chr2 242193529 + 187351003 187351304 AluYk11 308 + 0 301 44128 301 chain 150731 chr2 242193529 + 187355671 187357567 L1PA8 5853 + 3863 5753 12304 44 0 2 320 5 6 135 1 0 18 5 0 494 0 4 123 2 0 393 2 1 117 0 1 39 7 6 38 6 4 70 2 1 14 1 0 6 2 3 41 1 0 10 chain 8634 chr2 242193529 + 187357838 187357938 L1PA7 6471 + 6358 6458 73383 100 chain 4381 chr2 242193529 + 187365913 187365961 L1MA5A 2387 + 2230 2278 88997 48 chain 20090 chr2 242193529 + 187386708 187387065 THE1B 368 + 0 368 56269 15 2 0 25 0 5 86 38 37 30 36 45 125 chain 10166 chr2 242193529 + 187492549 187492673 THE1-int 844 + 705 826 70073 67 2 0 34 1 0 20 chain 34916 chr2 242193529 + 187510489 187510951 LTR2 463 + 0 463 38081 368 43 44 51 chain 251144 chr2 242193529 + 187512754 187515862 Harlequin-int 5206 + 125 3382 8194 18 3 0 6 7 3 142 3 1 188 4 0 134 1 0 65 1 0 104 0 1 35 2 135 20 0 14 88 28 45 145 0 1 455 0 1 847 12 9 800 chain 33996 chr2 242193529 + 187516615 187517079 LTR2 463 + 0 463 38709 38 0 1 329 28 30 9 1 0 24 3 0 32 chain 520125 chr2 242193529 + 187532282 187538742 L1PA7 6471 + 0 6465 2269 355 17 18 39 1 0 40 4 6 220 0 1 5 1 0 8 19 34 124 0 1 256 0 1 142 6 0 8 0 6 208 0 1 286 2 0 760 0 2 120 20 1 53 1 3 5 2 0 393 0 4 391 0 2 507 5 4 938 1 2 10 4 0 147 0 1 4 1 0 247 0 1 267 0 3 689 3 0 5 1 3 137 1 0 7 chain 162352 chr2 242193529 + 187555925 187557900 SVA_D 2077 + 58 2062 11588 119 0 2 724 0 184 111 89 0 189 75 1 13 4 0 328 0 10 323 chain 5459 chr2 242193529 + 187557157 187557232 SVA_D 2077 + 1084 1159 39108 75 chain 263161 chr2 242193529 + 187655534 187659192 MER61-int 3695 + 30 3695 7877 16 1 0 26 1 2 25 1 0 101 39 0 71 7 6 49 6 23 62 15 1 55 3 0 13 0 1 161 1 0 69 1 6 136 2 0 73 0 1 107 1 2 70 6 4 12 0 5 99 0 3 123 0 48 271 0 1 191 25 17 119 1 0 185 1 4 53 1 0 369 7 6 7 0 2 140 1 0 66 0 1 21 11 10 37 1 0 251 2 1 185 21 10 158 1 5 79 0 1 16 0 9 28 7 1 51 chain 5499 chr2 242193529 + 187666151 187666218 MER41A 554 + 399 466 83237 67 chain 91521 chr2 242193529 + 187734205 187735250 L1PA5 6144 + 5108 6142 19414 792 12 1 241 chain 89618 chr2 242193529 + 187746957 187748044 L1PA6 6164 + 5070 6162 19742 286 0 1 180 3 5 340 1 0 102 0 1 5 4 6 166 chain 5313 chr2 242193529 + 187811108 187811174 MER41B 635 + 481 548 84133 27 0 1 39 chain 100966 chr2 242193529 + 187811642 187813119 L1PB1 5432 + 3981 5419 18190 140 0 10 113 0 1 383 3 0 184 15 4 284 21 17 21 1 0 7 2 1 10 23 17 47 18 16 41 7 6 12 26 13 19 8 5 14 2 0 26 1 0 19 1 0 13 1 0 15 chain 3390 chr2 242193529 + 187880741 187880784 MER39 703 + 0 42 96178 13 1 0 29 chain 23575 chr2 242193529 + 187895779 187896062 AluSp 311 + 9 292 51466 283 chain 2914 chr2 242193529 + 187907853 187907890 L1MC4 1079 + 841 878 100721 37 chain 9274 chr2 242193529 + 187948343 187948523 MER66B 489 + 267 447 71966 32 17 24 15 28 21 88 chain 318608 chr2 242193529 + 187950303 187956108 L1PA7 6471 + 2434 6465 6430 260 5 1 218 0 1 27 0 1 135 0 1 400 1 2 49 5 1 53 0 3 80 1512 0 122 0 3 22 0 4 281 268 0 31 10 2 62 0 4 34 10 12 234 0 3 534 0 4 14 5 1 162 0 4 155 2 1 143 1 0 4 12 13 97 0 1 286 0 4 395 26 25 130 8 0 12 chain 26628 chr2 242193529 + 188018883 188019266 THE1D-int 1627 + 42 371 46793 70 54 0 259 chain 27145 chr2 242193529 + 188033503 188033901 LTR7 482 + 6 469 46054 61 10 48 104 13 46 20 13 7 177 chain 275250 chr2 242193529 + 188033932 188037469 HERVH-int 3825 + 15 3825 7574 37 0 3 126 0 2 99 3 0 51 1 0 31 15 16 95 13 15 23 1 266 447 15 0 149 1 0 57 11 1 37 1 0 173 8 7 116 0 1 23 27 62 220 24 29 71 0 1 123 2 1 111 0 1 5 5 4 394 0 1 157 21 0 438 27 28 53 0 11 281 1 0 44 chain 39401 chr2 242193529 + 188040169 188040643 LTR2 463 + 3 463 35079 204 1 0 101 14 0 72 0 1 82 chain 32795 chr2 242193529 + 188043388 188043824 L1PA8A 6298 + 5830 6269 39675 176 12 13 106 5 6 52 0 1 85 chain 23603 chr2 242193529 + 188044247 188044554 MLT2A2 560 + 0 310 51424 88 0 1 31 0 1 118 5 6 65 chain 7018 chr2 242193529 + 188066707 188066802 L1MA7 2200 + 1767 1861 77536 62 1 0 32 chain 543171 chr2 242193529 + 188123561 188129533 L1PA3long 6157 + 53 6156 1126 99 0 1 102 0 1 521 1 129 1421 0 1 3828 chain 40120 chr2 242193529 + 188234861 188235427 MER41A 554 + 0 554 34582 163 1 2 300 0 5 9 3 2 4 0 1 12 49 31 25 chain 98518 chr2 242193529 + 188238427 188239720 MER41-int 2638 + 1340 2633 18479 235 4 3 279 2 0 21 2 0 27 2 0 40 0 1 82 1 3 67 1 0 4 0 1 112 6 8 106 0 1 121 2 3 179 chain 41432 chr2 242193529 + 188240069 188240656 MER41A 554 + 2 554 33714 159 0 1 136 51 0 26 5 20 210 chain 21665 chr2 242193529 + 188247149 188247496 THE1B 368 + 0 367 54270 44 6 21 58 4 0 49 1 0 26 45 55 114 chain 11767 chr2 242193529 + 188261920 188262526 MER21A 919 + 0 912 67275 18 7 8 52 385 670 53 27 44 34 0 3 30 chain 8370 chr2 242193529 + 188264715 188264815 L1PA8 5853 + 5754 5853 73971 6 1 0 93 chain 6118 chr2 242193529 + 188503604 188503680 MER30 238 + 159 238 80668 31 0 3 45 chain 26684 chr2 242193529 + 188558160 188558513 THE1A 353 + 0 351 46706 13 2 0 34 0 1 42 5 4 134 0 1 5 1 0 117 chain 94725 chr2 242193529 + 188558515 188559732 THE1A-int 1579 + 0 1579 18941 519 8 7 124 0 3 160 16 22 212 0 354 178 chain 69401 chr2 242193529 + 188566880 188567748 L1PA8A 6298 + 5427 6291 24141 61 0 3 82 1 0 404 9 2 275 4 5 32 chain 10703 chr2 242193529 + 188578380 188578534 L1PA8 5853 + 5701 5853 69039 38 3 2 19 2 1 92 chain 123743 chr2 242193529 + 188669954 188671343 L1PA5 6144 + 4745 6138 14891 552 0 4 837 chain 7205 chr2 242193529 + 188678459 188678552 Tigger5 388 + 139 232 76935 93 chain 122369 chr2 242193529 + 188680969 188682343 L1PA5 6144 + 4384 5763 15130 499 0 1 413 0 4 462 chain 59493 chr2 242193529 + 188698606 188699391 L1PA8 5853 + 5055 5849 26512 29 0 2 100 0 1 205 5 12 4 0 1 82 0 1 72 1 0 46 2 0 68 2 1 10 1 0 51 2 1 19 14 13 32 0 4 40 chain 13197 chr2 242193529 + 188699539 188699690 L1PA7 6471 + 6317 6468 64786 151 chain 21337 chr2 242193529 + 188706371 188706717 MER1A 529 + 174 525 54718 13 5 6 91 8 9 87 1 3 60 30 31 51 chain 57998 chr2 242193529 + 188709589 188710485 L1MA1 4479 + 3266 4146 26966 87 0 9 27 3 0 131 3 0 41 14 9 145 2 1 23 2 0 15 2 1 9 1 0 5 7 8 49 1 0 20 2 0 13 1 0 81 16 12 42 0 1 83 1 0 26 4 3 35 1 0 4 chain 82139 chr2 242193529 + 188711051 188712082 MER11C 1089 + 0 1063 21214 229 0 1 34 0 3 52 1 18 249 12 13 175 0 8 107 0 1 153 0 1 19 chain 20375 chr2 242193529 + 188712547 188712772 L1PA2 6032 + 5808 6032 55916 219 1 0 5 chain 32912 chr2 242193529 + 188741512 188744021 L1PA7 6471 + 5702 6466 39578 224 1744 0 211 0 3 77 1 0 77 3 5 155 5 0 12 chain 11140 chr2 242193529 + 188773408 188773620 MER2 342 + 7 215 68351 60 29 27 10 0 1 10 3 0 52 10 10 38 chain 183516 chr2 242193529 + 188802016 188804376 HERVL-int 5654 + 0 5652 10410 326 2 1 293 0 1 27 2 1 686 0 1 43 1 0 265 24 3302 114 5 15 149 0 1 46 1 4 161 0 1 215 chain 21217 chr2 242193529 + 188810315 188810576 AluSc 308 + 40 302 54861 90 0 1 171 chain 179474 chr2 242193529 + 188825985 188828031 L1P2 5180 + 1759 3805 10611 707 0 1 950 1 0 388 chain 114419 chr2 242193529 + 188840324 188841794 L1P3 4156 + 3 1469 16485 62 0 1 62 1 0 118 17 16 58 1 0 533 7 2 535 0 3 76 chain 38466 chr2 242193529 + 188841794 188842291 L1PA7 6471 + 5971 6470 35744 255 13 15 174 0 2 42 2 0 11 chain 458795 chr2 242193529 + 188862085 188868365 L1PA8A 6298 + 34 6291 4160 6 1 0 16 1 0 11 23 12 23 0 1 16 19 10 17 3 2 9 2 1 12 1 0 6 2 1 12 2 0 16 36 30 7 1 0 15 14 9 28 18 16 20 9 1 47 62 57 76 1 0 71 0 3 5 3 0 12 34 34 133 0 1 38 4 0 51 0 4 5 0 1 233 2 9 111 1 2 52 8 29 63 9 8 594 4 5 61 0 1 439 1 0 24 2 4 461 0 4 436 2 0 280 30 13 175 6 7 339 5 7 449 1 0 25 0 2 123 1 0 37 0 3 31 1 0 328 4 3 267 0 1 174 0 9 158 1 2 211 0 1 117 2 0 124 chain 20750 chr2 242193529 + 188891049 188891349 LTR12C 1709 + 772 1159 55432 65 1 0 5 14 55 171 4 51 40 chain 2565 chr2 242193529 + 188891407 188891434 LTR12C 1709 + 1010 1037 103266 27 chain 67528 chr2 242193529 + 188961131 188962188 L1PB1 5432 + 4401 5423 24557 54 8 9 165 4 0 385 0 2 82 10 11 6 3 0 23 1 0 5 1 0 13 18 12 13 7 8 31 2 1 16 2 1 43 1 0 15 1 0 4 19 8 19 17 13 6 2 0 24 1 0 22 1 0 12 1 0 14 1 0 5 chain 41495 chr2 242193529 + 189023273 189024090 L1PB1 5432 + 4681 5420 33675 104 1 0 46 8 12 47 2 1 118 0 2 6 2 0 66 81 31 24 1 0 8 1 0 12 8 4 7 1 0 50 1 0 10 8 7 34 56 43 14 2 0 5 1 0 14 2 0 24 2 1 20 1 0 13 1 0 16 chain 305679 chr2 242193529 + 189026777 189030072 L1PA2 6032 + 2736 6032 6704 2547 0 1 748 chain 24091 chr2 242193529 + 189046837 189047137 AluSc 308 + 2 296 50659 18 6 0 276 chain 7940 chr2 242193529 + 189123380 189123598 MLT1C 463 + 55 455 75022 36 18 16 17 12 6 7 1 0 27 7 0 10 23 223 43 3 1 14 chain 4541 chr2 242193529 + 189187479 189187552 MIR 256 + 117 188 88101 44 6 4 23 chain 54016 chr2 242193529 + 189196707 189197449 L1PA8 5853 + 5104 5853 28222 294 7 5 67 0 14 80 1 0 46 0 1 71 25 22 36 2 1 19 1 0 93 chain 23979 chr2 242193529 + 189239520 189239779 L1PA3long 6157 + 5898 6157 50826 259 chain 82858 chr2 242193529 + 189251829 189252767 L1PA5 6144 + 5202 6143 21054 92 1 0 516 0 1 80 1 0 226 0 4 22 chain 171593 chr2 242193529 + 189270657 189272660 L1PA7 6471 + 4458 6459 11016 147 1 3 340 2 1 384 1 0 288 1 0 206 1 0 632 chain 72275 chr2 242193529 + 189292471 189293264 L1PA3long 6157 + 5364 6157 23468 793 chain 40660 chr2 242193529 + 189307559 189308094 MER41C 542 + 0 542 34179 49 0 1 124 8 10 137 0 2 75 1 0 20 1 4 120 chain 518331 chr2 242193529 + 189319190 189325146 L1PA5 6144 + 4 5963 2348 524 0 1 200 1 0 284 2 1 1276 0 1 200 11 0 704 2 1 5 0 1 77 0 1 365 0 3 114 0 3 50 0 1 1186 0 7 420 1 0 534 chain 60495 chr2 242193529 + 189416057 189416721 L1PA4 6152 + 5487 6151 26235 664 chain 33104 chr2 242193529 + 189426253 189426677 MER4A1 472 + 33 472 39432 42 1 6 245 0 3 114 0 7 22 chain 472340 chr2 242193529 + 189430391 189436165 L1PA5 6144 + 183 5972 3802 26 3 2 84 1 0 4 0 1 107 6 15 78 1 0 23 1 2 57 12 26 307 6 10 29 30 5 69 1 2 4 1 0 130 17 8 41 2 1 219 1 0 530 0 1 23 0 15 311 0 1 1572 0 3 455 0 4 462 1 2 873 1 0 74 0 1 212 chain 23345 chr2 242193529 + 189508679 189509048 THE1B 368 + 0 368 51857 17 2 0 23 0 5 29 1 0 33 2 3 62 17 14 23 17 17 67 1 0 75 chain 118574 chr2 242193529 + 189509080 189510624 THE1B-int 1605 + 34 1597 15798 167 16 0 229 1 26 17 1 10 7 2 0 3 7 0 74 8 13 95 0 3 100 7 8 562 0 1 248 chain 38997 chr2 242193529 + 189601769 189602201 L1PA4 6152 + 5708 6140 35360 432 chain 6704 chr2 242193529 + 189633505 189633624 MER20 218 + 24 141 78627 56 26 24 37 chain 121374 chr2 242193529 + 189652933 189654495 SVA_B 1603 + 4 1600 15283 14 0 6 18 12 5 71 0 1 77 1 0 404 63 0 46 0 117 83 0 1 4 3 1 13 1 0 16 4 0 40 4 0 40 5 1 14 1 0 67 9 8 362 3 0 187 chain 63573 chr2 242193529 + 189656497 189657257 L1PA7 6471 + 5710 6470 25509 420 2 1 177 15 16 146 chain 527869 chr2 242193529 + 189711627 189718093 L1PA6 6164 + 0 6161 1923 138 1 4 391 2 0 898 0 5 190 0 1 226 0 5 262 0 1 252 26 28 274 0 1 361 328 0 147 0 1 4 0 1 506 0 1 1621 0 4 653 1 2 5 1 0 179 chain 14144 chr2 242193529 + 189881207 189882193 MER4A1 472 + 0 472 63390 142 799 285 45 chain 9528 chr2 242193529 + 189954476 189954600 MER85 139 + 5 139 71416 83 4 14 37 chain 26952 chr2 242193529 + 189987060 189987412 THE1A 353 + 0 353 46335 111 1 0 7 0 1 52 1 0 15 1 4 32 1 0 131 chain 14258 chr2 242193529 + 190004130 190004283 L1PA3long 6157 + 6004 6157 63252 153 chain 60076 chr2 242193529 + 190054807 190055481 L1PA4 6152 + 5470 6143 26351 422 1 0 251 chain 10691 chr2 242193529 + 190072069 190072205 L1PA16 3655 + 3400 3536 69060 136 chain 22300 chr2 242193529 + 190074377 190074663 AluSc 308 + 8 291 53408 9 1 0 217 6 4 53 chain 100494 chr2 242193529 + 190117931 190119065 L1P1 4361 + 3191 4328 18237 64 0 5 890 1 0 155 1 0 23 chain 50835 chr2 242193529 + 190143633 190144184 L1PA2 6032 + 5481 6032 29262 551 chain 34152 chr2 242193529 + 190157858 190158321 LTR2B 499 + 9 499 38598 5 1 0 10 0 10 37 1 0 40 0 7 11 0 12 111 5 0 7 6 11 36 0 1 10 1 0 182 chain 42458 chr2 242193529 + 190213417 190214012 LTR71B 605 + 3 605 33088 85 0 2 44 16 13 39 6 15 153 1 0 103 8 7 127 1 2 12 chain 5012 chr2 242193529 + 190215749 190215811 LTR18B 584 + 330 392 85602 62 chain 65525 chr2 242193529 + 190222477 190223280 L1PA7 6471 + 5665 6470 25067 8 0 1 623 18 19 154 chain 353943 chr2 242193529 + 190223794 190228294 L1PA5 6144 + 5 5877 5869 116 0 14 427 0 1620 515 1 3 25 0 9 39 0 4 135 0 1 935 0 13 197 1 0 102 0 1 11 325 5 117 1 0 114 1 2 431 0 9 297 0 16 131 2 0 99 0 3 104 1 4 373 chain 32568 chr2 242193529 + 190242629 190243030 HERVL-int 5654 + 5236 5654 39899 187 0 6 172 0 11 42 chain 33038 chr2 242193529 + 190243030 190243459 MLT2A1 477 + 0 469 39487 142 0 1 25 0 4 152 1 0 61 3 39 45 chain 19083 chr2 242193529 + 190258000 190258377 MSTA 426 + 0 426 57461 108 22 46 39 89 94 8 0 20 111 chain 106682 chr2 242193529 + 190268842 190270220 L1PA8 5853 + 4455 5853 17472 212 1 0 339 1 9 78 0 1 110 25 26 291 3 1 42 1 0 41 8 13 64 1 0 9 1 0 49 2 1 19 1 0 42 0 13 38 chain 50121 chr2 242193529 + 190279533 190280123 LTR10C 591 + 0 591 29516 34 2 0 137 0 1 338 0 2 79 chain 36744 chr2 242193529 + 190283141 190283586 LTR10F 562 + 0 562 36927 38 0 2 76 0 115 331 chain 44149 chr2 242193529 + 190309849 190310407 MLT2A2 560 + 0 560 32048 183 1 0 11 1 4 362 chain 43433 chr2 242193529 + 190449524 190450024 L1PA3long 6157 + 5665 6157 32486 32 10 1 96 0 1 362 chain 539064 chr2 242193529 + 190471104 190477209 L1PA4 6152 + 0 6146 1398 484 4 1 152 0 3 516 0 3 476 0 1 718 0 15 252 9 11 71 0 5 1209 0 1 6 0 1 430 1 5 793 0 5 140 0 4 844 chain 4064 chr2 242193529 + 190481972 190482022 MLT1J1 437 + 54 104 90996 50 chain 408682 chr2 242193529 + 190491439 190497046 L1PB1 5432 + 79 5422 5037 11 0 2 52 0 1 36 1 0 112 0 1 106 3 2 6 1 0 14 0 2 316 0 5 156 0 10 236 165 13 99 76 0 12 4 0 24 0 3 91 0 1 7 0 2 513 0 2 96 0 9 182 0 3 48 0 5 83 0 1 93 0 6 280 0 4 64 23 26 20 1 0 893 8 12 189 0 1 235 0 4 42 0 1 143 1 3 199 1 3 70 6 9 67 0 2 171 0 1 36 0 1 116 0 7 63 102 12 24 1 0 9 1 0 11 5 1 9 2 0 11 0 1 40 2 1 15 1 0 43 2 1 16 2 0 6 16 6 19 2 0 5 1 0 14 2 0 24 1 0 21 1 4 9 1 0 18 chain 9940 chr2 242193529 + 190519940 190520153 Tigger1 2417 + 2208 2417 70553 21 1 0 17 2 4 6 4 0 32 1 0 66 44 44 19 chain 21868 chr2 242193529 + 190537286 190537593 THE1C 375 + 1 327 54018 35 0 1 71 12 26 51 8 10 9 0 2 121 chain 24804 chr2 242193529 + 190537594 190537912 THE1C-int 1605 + 367 694 49582 29 0 2 46 1 8 242 chain 5760 chr2 242193529 + 190546286 190546503 MER2 342 + 127 341 82085 73 127 124 17 chain 373777 chr2 242193529 + 190553866 190558472 L1PA7 6471 + 0 6461 5589 198 1 0 28 18 28 169 0 1 322 7 6 431 11 1 560 7 9 56 16 17 125 0 1845 389 1 0 489 0 4 518 1 0 11 5 6 89 0 1 151 0 1 9 0 1 666 0 1 175 9 10 144 chain 3148 chr2 242193529 + 190595110 190595147 L1PA7 6471 + 5167 5204 98375 37 chain 108209 chr2 242193529 + 190595148 190596403 L1PA7 6471 + 5204 6464 17288 410 0 3 81 0 2 764 chain 11780 chr2 242193529 + 190652903 190653077 MER30 238 + 0 238 67252 16 13 14 57 0 57 9 0 6 79 chain 12637 chr2 242193529 + 190730882 190731093 MSTA 426 + 150 379 65736 88 27 25 33 5 25 58 chain 15395 chr2 242193529 + 190736937 190737124 Tigger3a 397 + 139 327 61791 48 0 1 139 chain 186311 chr2 242193529 + 190749309 190751826 L1PA8 5853 + 3385 5601 10284 30 0 1 450 0 4 122 0 2 189 0 1 189 5 6 133 0 1 493 314 2 363 0 3 147 1 0 41 1 0 39 chain 21026 chr2 242193529 + 190797309 190797572 AluSc 308 + 38 303 55086 234 2 4 27 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265 1 2 201 0 2 29 1 2 686 2 1 6 0 1 159 0 5 688 chain 20444 chr2 242193529 + 191199661 191200011 THE1B 368 + 0 368 55835 104 12 13 52 1 0 6 0 3 6 42 58 64 7 6 56 chain 7918 chr2 242193529 + 191200823 191200970 MER5A 189 + 35 183 75078 22 1 0 9 20 22 32 0 1 47 5 4 11 chain 33398 chr2 242193529 + 191203680 191204041 L1PA2 6032 + 5671 6032 39177 361 chain 26802 chr2 242193529 + 191205377 191205676 SVA_D 2077 + 1777 2077 46539 59 1 2 239 chain 25299 chr2 242193529 + 191221133 191221499 THE1D 372 + 0 372 48785 165 29 29 44 1 7 95 1 0 24 0 1 7 chain 28599 chr2 242193529 + 191344549 191344854 AluYa5 310 + 1 306 43955 305 chain 3268 chr2 242193529 + 191410546 191410657 MER112 246 + 35 148 97308 22 29 32 24 21 20 15 chain 52933 chr2 242193529 + 191448023 191448665 LTR12_ 688 + 0 688 28599 142 1 2 375 0 35 108 0 10 16 chain 4611 chr2 242193529 + 191483204 191483627 MER61E 571 + 105 517 87745 23 329 317 27 9 10 35 chain 26057 chr2 242193529 + 191499216 191499580 THE1B 368 + 0 368 47649 19 2 0 18 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105 4 0 220 0 2 69 chain 24374 chr2 242193529 + 192924415 192924835 LTR7 482 + 0 477 50206 68 27 47 109 9 41 12 18 15 23 0 9 88 22 21 44 chain 3591 chr2 242193529 + 192952313 192952355 Tigger2a 444 + 307 349 94509 42 chain 20896 chr2 242193529 + 192983850 192984129 L1PA7 6471 + 6182 6467 55260 115 13 19 151 chain 19276 chr2 242193529 + 193024765 193025147 L1MA2 4263 + 198 576 57266 29 0 1 22 0 1 1 4 0 11 6 5 30 38 42 13 5 1 27 1 0 94 30 32 15 2 0 54 chain 135536 chr2 242193529 + 193066085 193067575 L1PA3long 6157 + 3851 5347 13484 8 0 6 1482 chain 15809 chr2 242193529 + 193141584 193142007 THE1D 372 + 0 371 61275 54 52 62 49 152 90 116 chain 74493 chr2 242193529 + 193142415 193143387 LTR5_Hs 974 + 0 974 22966 300 5 0 158 0 4 164 10 9 21 0 1 17 3 5 48 1 3 6 2 0 5 0 1 34 7 7 191 chain 90989 chr2 242193529 + 193170704 193171720 L1HS 6032 + 0 1016 19507 256 1 0 485 0 1 274 chain 5057 chr2 242193529 + 193201036 193201129 MLT1A0 366 + 259 348 85377 40 24 20 29 chain 23540 chr2 242193529 + 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202 22 0 27 0 1 18 9 6 5 1 0 102 6 0 56 1 0 64 5 4 33 1 3 30 chain 104718 chr2 242193529 + 195260468 195261620 L1PA4 6152 + 5001 6151 17727 300 2 0 850 chain 178760 chr2 242193529 + 195292160 195294773 L1PA10 4194 + 1805 4115 10647 19 1 2 5 0 3 201 1 0 280 1 4 60 0 5 54 0 2 183 3 0 40 9 6 65 1 0 243 30 37 122 1 0 44 0 1 427 2 1 75 313 0 63 0 2 327 4 0 39 chain 12362 chr2 242193529 + 195295234 195295416 L1PA7 6471 + 6291 6467 66211 16 0 7 8 9 2 137 6 0 6 chain 84695 chr2 242193529 + 195329032 195330048 L1PA7 6471 + 5180 6210 20685 441 1 0 97 0 3 64 10 19 68 0 1 102 4 5 181 0 1 48 chain 25772 chr2 242193529 + 195355053 195355416 L1PA8 5853 + 5492 5853 48065 28 0 1 41 1 0 20 0 4 22 2 0 71 1 0 9 1 0 13 1 0 5 6 7 27 2 1 19 4 3 90 chain 7706 chr2 242193529 + 195356919 195357328 MLT1B 390 + 17 374 75613 27 294 242 88 chain 24277 chr2 242193529 + 195387348 195387663 THE1A 353 + 36 353 50379 8 0 1 64 2 1 185 0 2 56 chain 118000 chr2 242193529 + 195387663 195389226 THE1A-int 1579 + 0 1565 15886 13 5 7 79 5 6 302 0 2 21 5 6 36 15 12 57 0 1 96 1 0 6 5 6 34 2 3 635 2 0 216 1 0 27 chain 11443 chr2 242193529 + 195445264 195445423 L1PA8 5853 + 5691 5848 67846 49 3 2 18 2 1 87 chain 59194 chr2 242193529 + 195493425 195494165 LTR12 884 + 0 869 26607 25 1 0 43 0 41 144 0 91 37 2 0 30 1 0 4 0 1 453 chain 5944 chr2 242193529 + 195499717 195499797 L1MD 993 + 417 506 81300 7 0 9 73 chain 5822 chr2 242193529 + 195514054 195514119 U6 107 + 19 84 81812 65 chain 10578 chr2 242193529 + 195516112 195516370 LTR12C 1709 + 789 927 69267 48 120 0 90 chain 3659 chr2 242193529 + 195516160 195516280 LTR12C 1709 + 1037 1079 91490 16 78 0 26 chain 545701 chr2 242193529 + 195523008 195529092 L1PA3long 6157 + 4 6157 988 351 0 2 805 0 3 295 0 4 113 0 1 710 0 4 972 0 5 677 0 1 410 0 4 426 0 45 1325 chain 159917 chr2 242193529 + 195567221 195569184 SVA_F 1814 + 10 1803 11762 691 0 40 146 50 1 4 1 0 56 0 16 47 174 0 166 1 0 10 1 0 616 chain 3931 chr2 242193529 + 195568061 195568108 SVA_F 1814 + 888 936 56398 4 0 1 43 chain 14627 chr2 242193529 + 195568217 195568389 SVA_F 1814 + 1011 1187 51366 83 0 1 7 0 1 40 0 1 7 0 1 35 chain 19571 chr2 242193529 + 195652791 195653092 MER1B 344 + 42 344 56930 38 11 12 124 4 0 50 14 19 44 2 1 14 chain 9153 chr2 242193529 + 195678755 195678891 MER33 330 + 74 214 72225 48 1 2 18 1 4 68 chain 41950 chr2 242193529 + 195742863 195743405 MLT2A2 560 + 8 560 33389 7 0 4 88 2 1 86 1 4 352 0 4 6 chain 550970 chr2 242193529 + 195743883 195749992 L1PA3long 6157 + 9 6157 677 523 0 15 22 4 0 1284 0 5 150 0 1 258 0 2 305 0 2 601 1 0 38 1 0 251 0 11 243 0 3 339 0 1 1062 0 1 184 0 4 843 chain 19737 chr2 242193529 + 195820184 195820461 L1PA8 5853 + 5582 5853 56745 27 2 0 69 2 1 14 6 5 41 3 2 21 1 0 91 chain 22914 chr2 242193529 + 195866776 195867118 THE1B 368 + 1 368 52489 39 0 15 52 2 3 62 1 0 26 35 45 125 chain 24184 chr2 242193529 + 195871703 195871959 AluYa5 310 + 54 310 50519 256 chain 12004 chr2 242193529 + 195916383 195916552 MER50 708 + 0 156 66834 47 8 0 10 6 0 48 0 1 50 chain 106903 chr2 242193529 + 195920092 195921734 L1PB1 5432 + 3840 5423 17446 13 0 9 61 2 0 201 8 0 115 0 1 369 0 4 15 5 2 7 0 1 143 0 1 15 8 9 6 0 2 65 0 1 223 47 11 24 1 0 4 34 27 51 2 1 16 1 0 39 47 35 15 25 20 18 0 1 5 1 0 23 1 0 11 1 0 15 1 0 4 chain 66231 chr2 242193529 + 195933161 195933897 L1PA4 6152 + 5401 6139 24902 127 0 2 609 chain 137333 chr2 242193529 + 195939850 195941572 L1PA8 5853 + 4172 5853 13313 575 3 0 50 1 0 189 19 23 512 0 1 42 1 0 44 2 0 70 2 1 15 1 0 46 2 1 16 40 4 92 chain 524133 chr2 242193529 + 196089201 196095309 L1PA5 6144 + 0 6144 2083 121 0 14 21 0 12 139 0 7 158 1 0 337 17 0 8 1 18 193 1 2 4 1 0 135 9 0 60 1 0 369 0 1 242 0 1 466 8 0 850 0 1 11 1 2 72 0 3 239 0 4 1141 0 2 171 6 5 5 0 1 50 1 0 256 0 5 167 1 5 226 0 1 619 chain 24188 chr2 242193529 + 196373788 196374049 AluYa5 310 + 38 299 50513 261 chain 65171 chr2 242193529 + 196392789 196393553 L1PA5 6144 + 4617 5383 25138 293 1 9 167 5 1 207 2 0 89 chain 4437 chr2 242193529 + 196409033 196409084 MER63B 433 + 309 360 88691 51 chain 48700 chr2 242193529 + 196532061 196532638 L1PA7 6471 + 5893 6467 30051 568 3 0 6 chain 36218 chr2 242193529 + 196537578 196538059 MER41C 542 + 0 531 37260 49 0 1 261 28 77 143 chain 27070 chr2 242193529 + 196554056 196554338 AluYd8 298 + 0 282 46167 282 chain 22608 chr2 242193529 + 196570437 196570708 L1PA6 6164 + 5891 6159 52973 76 1 0 187 2 0 5 chain 21238 chr2 242193529 + 196595072 196595341 L1PA7 6471 + 6197 6460 54832 97 10 4 162 chain 25910 chr2 242193529 + 196611081 196611433 THE1A 353 + 0 353 47846 24 13 14 71 2 1 140 0 1 102 chain 4326 chr2 242193529 + 196623735 196623835 L1MEf 1413 + 173 253 89313 47 40 20 13 chain 12137 chr2 242193529 + 196634184 196634335 MER6A 605 + 369 520 66594 151 chain 31543 chr2 242193529 + 196690031 196690392 L1PA3long 6157 + 5803 6157 40709 198 12 5 151 chain 22843 chr2 242193529 + 196772275 196772549 AluSp 311 + 0 283 52600 52 0 9 222 chain 189982 chr2 242193529 + 196812266 196814581 L1PA7 6471 + 4145 6469 10116 66 3 0 5 2 1 40 1 2 366 1 0 49 0 4 323 10 13 600 0 3 26 0 1 55 1 3 603 14 14 150 chain 5180 chr2 242193529 + 196854641 196854729 MER101-int 1169 + 632 721 84773 14 14 15 60 chain 17934 chr2 242193529 + 196857031 196857243 L1PREC2 3366 + 2206 2418 58714 212 chain 83382 chr2 242193529 + 196861667 196862721 MER11C 1089 + 0 1063 20938 184 0 1 4 1 0 61 0 1 66 0 4 96 0 2 130 17 18 24 6 4 95 0 4 5 1 0 38 0 1 182 1 0 143 chain 151029 chr2 242193529 + 196865801 196867634 L1PA7 6471 + 4633 6465 12286 5 0 3 52 0 1 82 0 1 178 1 0 7 1 3 361 5 6 282 0 1 95 0 2 5 21 4 89 1 3 244 0 8 393 4 0 7 chain 567981 chr2 242193529 + 196905587 196911619 L1HS 6032 + 0 6032 15 6032 chain 3661 chr2 242193529 + 196957226 196957311 MER4A 717 + 449 560 93905 28 25 45 26 0 6 6 chain 10850 chr2 242193529 + 196965168 196965382 L1MA3 4352 + 4156 4352 68775 79 14 10 14 2 0 23 1 0 5 7 1 29 1 0 11 6 2 11 1 0 5 0 1 5 chain 30132 chr2 242193529 + 196982796 196983183 L1PA8 5853 + 5463 5844 41906 101 1 0 44 2 0 71 1 0 8 1 4 5 3 0 48 1 0 16 1 0 84 chain 5510 chr2 242193529 + 197040758 197040993 LTR37B 484 + 258 484 83202 38 88 87 15 50 42 44 chain 481144 chr2 242193529 + 197062487 197068374 L1HS 6032 + 128 6032 3606 14 12 25 65 12 24 318 0 1 122 0 7 61 126 13 71 0 1 4 1 0 583 0 2 752 1 0 739 0 4 115 1 0 46 0 1 233 39 50 891 0 7 628 0 1 82 0 73 971 chain 61477 chr2 242193529 + 197068756 197069457 L1PA5 6144 + 5440 6142 25991 27 0 2 415 2 1 257 chain 45131 chr2 242193529 + 197085354 197085900 MER41A 554 + 0 547 31506 92 0 1 454 chain 4691 chr2 242193529 + 197126778 197126836 MADE1 96 + 7 91 87315 17 0 26 41 chain 7925 chr2 242193529 + 197140652 197140878 L1MA10 1535 + 1329 1503 75056 59 52 25 19 28 15 22 14 2 32 chain 12858 chr2 242193529 + 197245290 197245477 MER2 342 + 141 329 65334 146 14 15 27 chain 27705 chr2 242193529 + 197299311 197299823 L1PB1 5432 + 4942 5427 45307 49 0 3 109 13 11 24 1 0 6 1 0 12 2 0 3 2 0 9 2 0 52 2 1 15 1 0 43 41 29 18 20 19 25 1 0 22 1 0 12 1 0 18 2 0 5 chain 111027 chr2 242193529 + 197370398 197371766 LTR12C 1709 + 0 1709 16934 21 0 9 232 0 1 36 1 2 163 3 5 49 0 1 90 0 1 44 0 119 64 1 0 138 0 216 33 11 4 390 8 7 84 chain 12180 chr2 242193529 + 197392762 197392922 L1PA8 5853 + 5692 5850 66510 48 2 1 19 2 1 89 chain 19516 chr2 242193529 + 197422318 197422564 L1PA5 6144 + 5896 6142 57000 189 0 4 46 4 0 7 chain 24046 chr2 242193529 + 197447295 197447583 AluSp 311 + 5 298 50734 271 1 6 16 chain 8801 chr2 242193529 + 197447744 197447851 U6 107 + 0 107 72989 107 chain 7188 chr2 242193529 + 197450930 197451320 LTR12D 1347 + 587 1075 76981 77 289 387 24 chain 9925 chr2 242193529 + 197455988 197456182 L1MA5A 2387 + 2014 2195 70571 19 1 0 6 13 6 24 1 0 35 4 3 43 17 15 22 1 0 8 chain 16644 chr2 242193529 + 197472283 197472486 MER107 203 + 1 203 60220 95 2 1 106 chain 47815 chr2 242193529 + 197483234 197483826 LTR10C 591 + 4 591 30353 30 2 0 226 6 0 53 0 1 196 0 2 79 chain 5554 chr2 242193529 + 197502213 197502353 MER30 238 + 75 238 83014 16 47 67 27 5 8 45 chain 5527 chr2 242193529 + 197574907 197574970 THE1B-int 1605 + 1528 1591 83125 63 chain 25443 chr2 242193529 + 197574983 197575344 THE1B 368 + 0 365 48564 169 1 0 19 9 12 14 0 4 12 1 0 9 5 4 122 chain 30630 chr2 242193529 + 197576861 197577307 MER4A1 472 + 0 472 41445 162 1 2 39 12 49 12 23 11 197 chain 269096 chr2 242193529 + 197578776 197582522 HERVH-int 3825 + 0 3825 7731 162 0 1 88 31 31 51 1 0 77 9 8 27 4 32 8 47 0 28 0 265 456 43 13 184 9 0 176 7 6 78 0 27 132 5 4 236 0 5 241 1 3 5 2 0 378 0 9 242 165 0 43 1 0 809 chain 14044 chr2 242193529 + 197589253 197589451 THE1B 368 + 174 368 63526 19 1 5 19 8 1 76 1 0 74 chain 67679 chr2 242193529 + 197606477 197607219 L1PA4 6152 + 5138 5880 24523 742 chain 151265 chr2 242193529 + 197618051 197619752 SVA_D 2077 + 0 2071 12270 724 0 3 21 16 13 126 0 83 58 0 47 138 1 0 17 1 243 586 1 0 12 chain 82481 chr2 242193529 + 197622656 197625059 Tigger1 2417 + 1013 2167 21137 196 0 1 108 0 1 61 0 3 75 0 1 77 0 1 210 9 8 40 0 3 30 643 0 194 670 56 17 1 0 72 chain 50630 chr2 242193529 + 197629001 197629606 L1PA6 6164 + 5561 6162 29339 414 1 2 5 1 0 174 4 0 6 chain 526695 chr2 242193529 + 197728962 197734964 L1PA4 6152 + 1 6151 1969 153 0 1 125 0 11 289 4 5 123 12 5 48 11 139 2235 0 5 2541 0 4 292 18 23 151 chain 50441 chr2 242193529 + 197741407 197741981 L1PA4 6152 + 4735 5304 29401 516 6 1 52 chain 76341 chr2 242193529 + 197741981 197742823 L1PA4 6152 + 5308 6151 22479 835 0 1 7 chain 518007 chr2 242193529 + 197748009 197754294 L1PA7 6471 + 59 6468 2369 150 1 0 4 0 1 23 7 22 30 12 13 99 0 1 8 2 0 73 0 1 125 18 17 856 0 1 10 0 3 321 6 5 57 0 1 101 6 95 328 0 1 57 0 1 5 2 1 171 0 1 811 4 5 46 2 0 46 0 4 441 13 8 383 0 1 188 1 0 4 0 1 67 7 0 25 6 10 717 0 15 208 0 3 844 chain 11649 chr2 242193529 + 197765072 197765328 L1PB1 5432 + 5197 5427 67484 23 2 1 15 1 0 45 1 0 15 25 12 19 11 8 11 2 0 13 0 8 7 9 0 17 1 0 13 1 0 15 1 0 4 1 0 4 chain 3968 chr2 242193529 + 197765373 197765418 L1MA5A 2387 + 2251 2296 91652 45 chain 176864 chr2 242193529 + 197769451 197771506 L1PA5 6144 + 4082 6144 10732 249 0 1 463 0 5 201 1 0 114 1 2 177 1 0 385 7 7 124 0 1 320 1 2 11 chain 414841 chr2 242193529 + 197830079 197835301 L1PA7 6471 + 1362 6466 4962 798 0 5 353 6 5 540 8 10 82 7 14 24 0 6 223 2 1 4 0 1 18 0 1 339 0 3 463 189 8 179 0 5 42 1 2 119 6 8 24 1 0 143 0 12 417 0 1 139 0 12 65 0 1 185 0 3 679 11 14 108 0 1 47 chain 25594 chr2 242193529 + 197836198 197836475 AluYa5 310 + 35 310 48330 88 2 0 187 chain 17803 chr2 242193529 + 197907024 197907228 L1PA8 5853 + 3680 3884 58888 204 chain 71939 chr2 242193529 + 197912174 197912960 L1PA2 6032 + 5249 6028 23561 623 7 0 156 chain 36295 chr2 242193529 + 197934807 197935474 L1PA15 4387 + 3692 4356 37216 108 0 1 9 0 2 15 4 0 47 1 0 16 4 2 35 8 7 126 2 0 40 6 5 26 1 0 6 2 23 22 41 41 44 6 3 35 45 33 18 chain 15782 chr2 242193529 + 197952653 197952988 THE1B 368 + 26 367 61308 56 34 35 59 0 2 6 55 59 59 18 17 48 chain 530365 chr2 242193529 + 198017937 198024409 L1PA7 6471 + 3 6468 1814 206 1 2 18 16 1 12 8 23 142 1 2 110 0 1 906 1 0 330 1 0 648 0 1 178 0 1 48 10 0 700 0 1 151 1 2 5 1 0 6 1 0 28 3 0 24 0 8 279 1 0 153 0 11 343 17 1 174 1 3 57 0 1 1036 1 3 521 1 0 79 0 1 216 1 0 26 3 0 7 chain 11114 chr2 242193529 + 198024488 198024618 AluSp 311 + 7 137 68391 130 chain 3053 chr2 242193529 + 198046098 198046132 MER58A 224 + 46 80 99271 34 chain 6539 chr2 242193529 + 198046386 198046455 L1P1 4361 + 10 79 79197 69 chain 38661 chr2 242193529 + 198133120 198133538 L1PA2 6032 + 5613 6031 35598 418 chain 33827 chr2 242193529 + 198155957 198156408 MER4A1 472 + 0 462 38828 15 0 2 24 0 7 343 12 14 57 chain 107239 chr2 242193529 + 198156873 198158461 THE1C-int 1605 + 25 1605 17412 302 0 6 92 26 33 56 0 2 46 0 1 206 0 1 4 1 0 32 0 1 115 27 20 63 0 1 85 126 116 107 0 1 4 11 4 250 3 0 32 chain 539063 chr2 242193529 + 198196260 198202415 L1PA5 6144 + 3 6139 1399 105 0 4 616 0 1 682 0 1 711 0 2 1030 2 0 41 1 2 603 1 0 1225 0 1 39 0 1 87 27 0 985 chain 8583 chr2 242193529 + 198214351 198214624 Ricksha_c 1012 + 91 328 73489 45 19 14 20 13 7 25 104 79 47 chain 15005 chr2 242193529 + 198215646 198215888 Ricksha 1077 + 73 304 62266 6 1 0 4 1 0 21 8 5 12 3 0 29 6 3 151 chain 2937 chr2 242193529 + 198296576 198296634 MER96B 391 - 103 160 100535 14 5 4 25 1 0 5 0 1 8 chain 208274 chr2 242193529 + 198528912 198531534 L1PA8 5853 + 3214 5853 9408 56 0 6 316 0 2 311 3 5 566 2 0 112 1 0 417 4 7 55 4 5 64 0 1 88 0 1 108 0 1 91 0 9 129 1 0 44 2 0 74 1 0 58 2 1 19 1 0 93 chain 39957 chr2 242193529 + 198540785 198541321 MLT2A2 560 + 0 560 34692 180 1 0 17 31 38 171 0 11 48 0 7 88 chain 60857 chr2 242193529 + 198575490 198576152 L1PA3long 6157 + 4736 5398 26143 662 chain 394551 chr2 242193529 + 198581976 198586253 L1PA2 6032 + 1741 6022 5242 2479 6 10 1792 chain 41186 chr2 242193529 + 198616286 198616944 L1PA11 4918 + 3902 4558 33848 69 5 15 21 1 2 40 4 12 275 1 0 57 17 14 65 2 0 16 5 4 16 4 0 9 8 3 10 13 9 15 1 0 4 chain 58362 chr2 242193529 + 198670755 198671406 L1PA4 6152 + 4418 5068 26847 173 1 0 477 chain 11817 chr2 242193529 + 198679453 198679728 L1PB1 5432 + 5169 5420 67175 51 2 1 16 1 0 40 7 6 13 3 0 6 66 51 17 1 0 21 1 0 13 1 0 16 chain 4690 chr2 242193529 + 198683591 198683647 MER58A 224 + 53 109 87329 56 chain 510668 chr2 242193529 + 198684460 198690891 L1PA7 6471 + 3 6463 2739 194 8 7 24 2 1 12 23 22 143 12 0 77 20 0 172 1 0 4 0 1 21 0 1 4 1 0 81 14 4 285 1 12 243 0 1 454 0 10 248 11 15 393 0 1 87 0 2 109 0 1 7 1 4 452 13 13 436 0 4 653 0 1 166 1 2 150 15 16 136 0 4 426 0 1 67 5 0 35 12 28 387 0 4 85 0 1 47 0 1 50 1 3 476 1 0 71 0 11 94 chain 39849 chr2 242193529 + 198726464 198726957 L1PA7 6471 + 5666 6164 34774 302 5 6 36 2 6 148 chain 9522 chr2 242193529 + 198726962 198727073 L1PA7 6471 + 6196 6307 71428 111 chain 12927 chr2 242193529 + 198727080 198727236 L1PA7 6471 + 6314 6470 65209 156 chain 2088 chr2 242193529 + 198800566 198800606 L1PA7 6471 + 6285 6314 105835 22 11 0 7 chain 12125 chr2 242193529 + 198800607 198800753 L1PA7 6471 + 6323 6469 66615 146 chain 17775 chr2 242193529 + 198828394 198828645 L1PA10 4194 + 3915 4161 58924 167 2 1 32 13 10 25 1 0 11 chain 86717 chr2 242193529 + 198847684 198850187 L1PB1 5432 + 4193 5413 20267 322 0 3 7 1 0 6 0 1 121 0 3 447 1329 64 53 2 1 16 2 0 44 1 0 15 25 13 18 8 5 14 2 0 24 1 0 21 1 0 8 1 0 14 chain 14538 chr2 242193529 + 198855929 198856143 L1PA8 5853 + 5636 5848 62858 46 1 0 9 1 2 47 2 1 19 12 11 77 chain 332549 chr2 242193529 + 198892282 198897694 L1PA11 4918 + 6 4629 6177 36 2 0 36 4 1 30 28 25 46 14 14 19 2 0 5 2 1 255 1 10 266 1 0 229 17 17 241 4 3 157 381 16 383 17 19 225 5 4 16 0 4 39 4 5 43 263 0 51 6 4 503 16 4 108 1 2 253 0 7 101 0 2 183 5 8 33 5 6 20 1 0 6 2 1 223 1 0 181 7 8 393 0 1 82 0 1 13 151 0 48 2 1 13 2 0 68 2 0 13 2 1 18 25 36 11 1 0 13 60 44 18 chain 24949 chr2 242193529 + 198934966 198935236 L1PA2 6032 + 5762 6032 49360 270 chain 3035 chr2 242193529 + 198976452 198976487 L1PB3 3668 + 76 111 99453 35 chain 6236 chr2 242193529 + 198980970 198981139 MER20 218 + 29 193 80217 21 47 41 54 25 26 22 chain 43790 chr2 242193529 + 199027963 199028451 L1PA3long 6157 + 5669 6157 32266 488 chain 506309 chr2 242193529 + 199028485 199034594 L1PA6 6164 + 5 6162 2919 231 0 2 97 0 1 4 0 8 25 1 0 87 5 6 51 0 2 48 1 0 491 0 1 4 1 0 244 0 1 381 7 3 112 0 18 8 0 1 205 0 1 280 9 10 115 5 13 144 0 1 186 0 3 30 0 1 343 0 2 9 2 0 16 0 1 32 2 1 562 1 2 76 0 6 186 0 1 550 21 13 201 13 5 405 0 1 37 0 6 37 0 4 215 1 0 275 5 9 343 1 0 4 chain 266560 chr2 242193529 + 199059330 199063759 L1MA1 4479 + 228 4163 7789 35 6 0 17 2 0 68 16 14 62 0 2 116 0 2 133 0 3 107 4 0 102 3 0 23 1 0 24 9 8 73 0 4 61 5 6 226 140 2 13 0 1 79 0 3 325 16 16 10 22 0 188 12 4 112 5 0 9 1 9 394 0 3 120 1 0 65 2 1 12 0 1 52 6 7 31 2 0 33 1 0 58 316 17 79 1 0 26 2 0 86 9 11 34 0 1 35 14 12 15 11 7 67 1 0 11 5 0 50 9 4 50 1 0 6 8 9 7 3 0 129 2 0 221 2 0 15 2 1 57 6 7 7 1 0 20 3 1 12 1 0 36 0 1 48 55 51 49 40 41 6 2 0 14 5 9 6 0 3 19 1 0 10 1 0 11 chain 35026 chr2 242193529 + 199073007 199073412 L1PA5 6144 + 5736 6140 38002 327 2 1 76 chain 277361 chr2 242193529 + 199155520 199159462 L1PA10 4194 + 197 4106 7510 10 2 0 9 11 7 9 2 0 9 5 4 4 1 0 22 2 0 16 1 0 7 45 19 21 3 1 18 1 0 21 1 0 7 5 0 14 4 0 6 6 2 81 1 0 29 0 1 21 18 15 210 0 2 12 91 92 495 0 1 4 1 0 400 1 0 63 0 1 185 6 10 94 0 1 156 3 0 5 15 19 59 0 1 154 0 1 5 1 0 103 0 1 32 1 0 7 8 12 21 1 0 444 1 0 223 0 12 43 0 2 280 2 1 4 0 1 400 chain 4629 chr2 242193529 + 199162487 199162547 MADE1 96 + 0 96 87650 14 0 36 46 chain 36532 chr2 242193529 + 199179364 199179805 LTR7 482 + 0 473 37056 220 0 1 44 0 31 177 chain 299413 chr2 242193529 + 199179816 199183412 HERVH-int 3825 + 0 3825 6848 530 1 0 11 1 0 4 0 1 24 1 0 9 2 1 10 4 0 7 6 0 6 3 1 14 1 38 27 2 0 15 2 1 21 21 0 59 1 0 64 0 3 380 15 0 459 4 31 126 1 8 453 0 1 433 0 1 380 10 220 13 18 16 458 chain 12515 chr2 242193529 + 199185230 199185443 LTR7 482 + 0 213 65959 86 50 0 13 0 50 64 chain 20161 chr2 242193529 + 199185450 199185671 LTR7 482 + 261 482 56178 221 chain 4496 chr2 242193529 + 199194369 199194460 MER67A 545 + 0 80 88356 11 4 3 45 10 1 16 1 0 4 chain 12675 chr2 242193529 + 199199537 199199673 L1PA3long 6157 + 6008 6144 65667 136 chain 9581 chr2 242193529 + 199247246 199247351 LTR7 482 + 377 482 71300 105 chain 284174 chr2 242193529 + 199247353 199250970 HERVH-int 3825 + 0 3825 7315 188 8 6 7 6 0 10 0 11 311 11 7 30 1 0 9 2 1 25 0 13 13 3 0 26 1 0 40 1 0 14 22 1 17 2 1 49 1 0 5 0 1 449 15 0 207 0 1 239 8 35 1260 141 353 496 chain 36783 chr2 242193529 + 199252233 199252648 LTR7 482 + 0 446 36896 263 1 32 151 chain 88426 chr2 242193529 + 199262416 199263532 MER11A 1151 + 0 1151 19958 107 0 2 67 8 0 23 2 0 92 0 2 95 0 1 147 0 7 16 1 0 114 6 9 8 1 0 115 1 0 13 7 41 84 8 7 201 chain 88217 chr2 242193529 + 199280036 199281123 MER11B 1079 + 0 1079 20001 264 3 0 320 12 11 177 8 2 213 0 1 61 11 12 18 chain 6941 chr2 242193529 + 199406010 199406204 MER2 342 + 131 326 77803 4 0 1 14 1 5 48 3 0 20 44 42 14 23 23 19 0 1 4 chain 237947 chr2 242193529 + 199528879 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66 62 42 6 0 18 6 7 60 chain 5273 chr2 242193529 + 199876124 199876203 LTR23 429 + 72 153 84324 24 4 6 51 chain 414445 chr2 242193529 + 199887773 199892733 L1PA7 6471 + 1493 6470 4970 30 0 1 195 0 1 127 0 1 4 1 0 76 0 1 4 0 1 145 3 0 10 3 4 68 0 7 470 18 8 33 0 1 1393 10 0 347 7 6 228 12 20 275 1 0 671 0 7 367 1 4 53 0 8 134 0 1 82 0 2 192 chain 17423 chr2 242193529 + 199960518 199960781 MER2 342 + 71 341 59325 9 0 1 14 1 0 12 0 2 21 5 6 25 1 0 66 3 9 59 3 2 44 chain 16895 chr2 242193529 + 199981746 199982091 L1PB1 5432 + 5105 5418 59919 9 1 0 24 1 0 6 1 0 12 2 0 3 2 0 9 2 0 52 3 1 16 1 0 43 2 1 15 2 0 6 20 11 13 9 6 14 2 0 24 1 0 22 1 0 12 5 4 10 chain 29834 chr2 242193529 + 199995156 199995556 MER57B1 401 + 0 401 42203 223 5 10 41 0 1 16 6 1 109 chain 14728 chr2 242193529 + 200055681 200055895 L1PA15 4387 + 162 374 62631 4 1 0 65 15 14 129 chain 44602 chr2 242193529 + 200152005 200152517 MER9a1 513 + 0 513 31784 507 0 1 5 chain 9405 chr2 242193529 + 200175206 200175323 LTR12C 1709 + 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5853 72453 21 1 0 91 chain 89399 chr2 242193529 + 203008003 203009053 MER11C 1089 + 0 1063 19775 176 0 2 72 0 1 62 0 4 373 0 4 43 0 1 188 2 3 134 chain 20397 chr2 242193529 + 203048158 203048400 AluSc5 308 + 57 299 55887 242 chain 10288 chr2 242193529 + 203131571 203131707 MER85 139 + 4 139 69834 97 5 4 34 chain 13811 chr2 242193529 + 203137170 203137409 MER30 238 + 0 238 63866 18 15 13 76 4 23 27 21 3 78 chain 11743 chr2 242193529 + 203185390 203185540 L1PA7 6471 + 6322 6468 67322 130 1 0 6 3 0 10 chain 123807 chr2 242193529 + 203206381 203207797 SVA_D 2077 + 0 1947 14880 12 2 0 9 2 0 16 2 5 12 0 1 168 3 0 502 0 3 33 3 0 118 0 535 259 1 0 274 chain 23971 chr2 242193529 + 203230026 203230378 THE1B 368 + 0 366 50835 104 1 0 65 1 0 29 30 45 100 6 7 16 chain 122974 chr2 242193529 + 203230380 203231930 THE1B-int 1605 + 0 1590 15030 10 4 3 163 1 0 249 15 42 150 6 20 373 6 5 41 0 2 532 chain 23601 chr2 242193529 + 203231944 203232301 THE1B 368 + 0 366 51430 108 5 4 57 1 0 29 30 45 33 9 5 85 chain 3404 chr2 242193529 + 203234903 203234945 LTR32 486 + 13 55 96030 42 chain 24050 chr2 242193529 + 203295665 203295964 AluSc 308 + 0 296 50728 62 3 0 234 chain 124933 chr2 242193529 + 203307892 203309463 THE1B-int 1605 + 0 1605 14718 295 2 3 132 1 26 14 4 11 10 1 2 965 0 1 76 1 0 70 chain 22149 chr2 242193529 + 203309463 203309812 THE1B 368 + 0 368 53636 40 0 15 25 5 2 82 1 0 8 3 1 25 35 45 125 chain 61671 chr2 242193529 + 203344632 203345468 LTR12 884 + 2 878 25950 293 1 43 38 2 0 134 5 4 130 15 16 38 0 1 9 1 0 170 chain 6583 chr2 242193529 + 203376171 203376366 MER20 218 + 3 200 79032 16 3 4 30 1 4 20 84 82 41 chain 3836 chr2 242193529 + 203523507 203523563 L1ME2 1516 + 556 611 92585 29 0 1 7 2 0 18 chain 31604 chr2 242193529 + 203536693 203537084 L1PA5 6144 + 5752 6144 40659 229 0 2 5 7 6 150 chain 30263 chr2 242193529 + 203555976 203556323 L1PA7 6471 + 6116 6470 41796 21 1 0 44 0 8 281 chain 2579 chr2 242193529 + 203584917 203585077 MIR 256 + 62 236 103108 26 68 72 12 0 1 4 1 0 4 30 40 15 chain 32855 chr2 242193529 + 203668186 203668630 MLT2A1 477 + 0 477 39625 168 5 2 12 0 1 21 0 1 179 22 56 37 chain 347754 chr2 242193529 + 203697527 203702820 L1PA8 5853 + 1628 5852 5936 124 5 12 104 0 1 97 0 2 569 1 3 58 1 2 84 0 1 373 314 0 556 4 3 5 0 2 181 0 1 138 776 0 26 0 3 882 1 0 38 0 2 32 0 1 81 0 2 6 0 1 64 0 2 298 0 2 180 1 0 44 2 0 70 5 4 6 1 0 47 7 6 19 1 0 92 chain 29438 chr2 242193529 + 203700188 203700532 L1PA8 5853 + 5145 5491 42686 240 0 2 104 chain 7598 chr2 242193529 + 203782050 203782143 U6 107 + 14 107 75875 93 chain 3585 chr2 242193529 + 203800563 203800606 MLT1A0 366 + 261 305 94545 13 0 1 30 chain 23997 chr2 242193529 + 203827602 203827947 THE1B 368 + 0 368 50798 69 0 14 86 1 0 23 41 51 125 chain 30948 chr2 242193529 + 203881237 203881695 MLT2A1 477 + 0 477 41175 169 2 16 19 0 1 176 59 63 33 chain 19243 chr2 242193529 + 203895920 203896147 L1PA8 5853 + 5381 5608 57304 139 0 1 42 2 1 44 chain 6545 chr2 242193529 + 203896149 203896219 L1PA8 5853 + 5608 5678 79174 70 chain 10158 chr2 242193529 + 203896237 203896380 L1PA8 5853 + 5700 5841 70091 40 2 1 19 3 2 79 chain 16377 chr2 242193529 + 203931039 203931240 THE1D-int 1627 + 1419 1622 60545 158 1 0 12 0 3 30 chain 7370 chr2 242193529 + 204001613 204001697 FAM 185 + 67 151 76474 84 chain 66529 chr2 242193529 + 204035736 204036508 L1PA6 6164 + 5379 6151 24810 772 chain 22730 chr2 242193529 + 204182267 204182582 L1PB2 3958 + 3528 3838 52786 17 1 0 72 1 0 64 1 0 59 0 1 12 2 0 22 1 0 63 chain 5561 chr2 242193529 + 204231104 204231196 MER45A 178 + 74 165 82985 46 12 11 34 chain 9120 chr2 242193529 + 204339277 204339422 MER2 342 + 143 291 72304 51 15 20 38 2 0 39 chain 17346 chr2 242193529 + 204358603 204358808 AluSg7 307 + 28 234 59418 103 0 1 102 chain 146568 chr2 242193529 + 204384907 204386560 L1HS 6032 + 947 2600 12571 1653 chain 22137 chr2 242193529 + 204388021 204388435 MSTC 436 + 16 436 53645 89 5 6 28 28 5 14 53 81 13 17 17 167 chain 2423 chr2 242193529 + 204391801 204391872 MADE1 96 - 8 96 104071 28 17 34 26 chain 26456 chr2 242193529 + 204411961 204412319 THE1B 368 + 0 368 47045 44 0 15 44 0 2 97 2 0 47 5 0 119 chain 125449 chr2 242193529 + 204412319 204413893 THE1B-int 1605 + 0 1599 14636 43 9 10 253 1 2 66 2 1 57 0 25 1076 1 0 66 chain 26165 chr2 242193529 + 204413899 204414252 THE1B 368 + 0 368 47481 44 6 21 48 0 1 46 13 12 30 2 0 82 0 2 82 chain 4670 chr2 242193529 + 204443369 204443608 L1MA8 2339 + 2108 2319 87439 6 0 7 29 13 10 14 67 59 23 1 0 10 56 33 20 chain 2456 chr2 242193529 + 204445005 204445131 L1M4 1397 + 881 1005 103866 18 76 78 11 4 0 17 chain 148881 chr2 242193529 + 204464088 204466044 L1PA7 6471 + 4655 6459 12428 230 0 1 67 157 5 318 7 0 338 0 3 514 0 1 80 1 0 95 1 2 10 0 2 138 chain 42402 chr2 242193529 + 204485072 204485607 MER41A 554 + 13 554 33128 135 1 2 318 4 8 58 1 2 18 chain 6561 chr2 242193529 + 204510056 204510132 L1MA3 4352 + 3996 4072 79115 76 chain 53707 chr2 242193529 + 204552937 204554028 L1PB1 5432 + 4498 5420 28321 130 4 0 76 3 4 97 39 39 10 0 8 162 0 2 77 166 5 8 3 0 18 1 0 5 3 0 7 1 0 10 2 0 3 2 0 10 2 0 50 1 0 18 1 0 7 88 94 8 2 0 24 1 0 21 1 0 8 6 5 16 chain 161069 chr2 242193529 + 204558293 204560189 L1PA6 6164 + 4250 6155 11680 120 0 4 304 0 1 639 0 4 159 0 1 665 1 0 8 chain 62156 chr2 242193529 + 204582968 204583638 L1PA2 6032 + 5362 6032 25831 670 chain 9831 chr2 242193529 + 204643541 204643741 MER30 238 + 40 237 70757 67 4 23 22 0 6 8 6 0 15 21 2 16 13 10 28 chain 6121 chr2 242193529 + 204649637 204649782 L1PREC2 3366 + 2922 3048 80653 30 3 0 11 22 8 16 24 22 39 chain 39656 chr2 242193529 + 204747298 204747760 L1PA5 6144 + 4349 4815 34922 278 3 8 23 1 0 157 chain 73604 chr2 242193529 + 204802117 204802993 L1PA7 6471 + 5583 6464 23191 38 0 3 671 0 2 167 chain 16009 chr2 242193529 + 204803655 204803906 L1MA3 4352 + 37 288 61015 65 7 11 42 1 0 15 13 11 41 2 1 65 chain 36681 chr2 242193529 + 204821289 204821703 L1PA3long 6157 + 5736 6157 36964 276 0 7 138 chain 13406 chr2 242193529 + 204821744 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chain 11204 chr2 242193529 + 205900629 205900872 7SK 245 + 0 245 68240 84 95 97 64 chain 19415 chr2 242193529 + 205918920 205919246 THE1D 372 + 0 350 57116 38 7 9 14 4 14 91 24 27 41 2 1 7 0 7 46 0 4 37 2 1 13 chain 63138 chr2 242193529 + 205939167 205939925 LTR17 781 + 0 781 25592 327 1 0 82 0 1 301 10 33 37 chain 10171 chr2 242193529 + 205967902 205968029 LTR64 526 + 0 127 70069 127 chain 24788 chr2 242193529 + 205976739 205977041 AluSp 311 + 4 302 49606 278 4 0 20 chain 98909 chr2 242193529 + 205977057 205978429 LTR12C 1709 + 1 1709 18423 20 0 9 226 36 40 42 0 43 83 10 9 218 0 41 25 0 2 38 0 200 74 0 47 90 27 20 79 12 13 54 0 2 228 4 0 23 1 0 82 chain 26700 chr2 242193529 + 205978730 205979080 THE1B 368 + 0 368 46683 44 0 15 113 1 0 27 4 0 107 8 16 46 chain 117719 chr2 242193529 + 206014700 206016615 THE1B-int 1605 + 0 1599 15934 432 13 38 431 323 10 97 0 1 293 7 8 208 4 0 7 16 0 32 34 24 18 chain 20852 chr2 242193529 + 206016620 206016996 THE1B 368 + 0 368 55306 12 3 1 27 0 5 45 13 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242193529 + 206998189 206998225 MLT2B1 522 + 486 522 99140 36 chain 539975 chr2 242193529 + 207000910 207006924 L1PA3long 6157 + 4 6149 1342 148 0 1 86 0 1 442 0 3 91 0 128 156 0 2 721 0 1 44 0 1 1233 0 1 528 12 0 41 0 4 371 0 1 2141 chain 30568 chr2 242193529 + 207017217 207017627 LTR7 482 + 0 482 41511 69 8 46 87 0 1 21 0 1 18 4 35 11 0 1 192 chain 305523 chr2 242193529 + 207017629 207021658 HERVH-int 3825 + 0 3825 6708 212 0 11 311 5 0 36 1 0 10 1 0 10 4 0 5 19 13 22 78 28 44 8 28 49 0 1 4 2 0 645 9 0 29 0 2 10 1 0 309 0 1 56 6 0 236 25 30 872 167 2 40 1 0 102 4 10 20 0 1 676 chain 29984 chr2 242193529 + 207022872 207023284 LTR7 482 + 0 482 42071 68 9 47 109 8 40 21 1 0 4 6 7 186 chain 72836 chr2 242193529 + 207036832 207037793 LTR5_Hs 974 + 0 974 23349 108 12 20 161 0 1 109 2 1 67 0 1 188 1 0 163 8 15 19 20 18 103 chain 12604 chr2 242193529 + 207172260 207172515 MER39 703 + 391 652 65792 34 82 86 16 0 2 123 chain 10811 chr2 242193529 + 207181158 207181303 L1PA16 3655 + 3394 3540 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61 45 4 1 0 22 2 0 13 1 0 5 chain 25385 chr2 242193529 + 207973464 207973757 AluSp 311 + 8 300 48642 102 1 0 190 chain 5962 chr2 242193529 + 207978311 207978391 MADE1 96 + 0 96 81223 31 1 17 48 chain 13256 chr2 242193529 + 207982877 207983038 Tigger2a 444 + 209 373 64699 142 0 3 19 chain 45372 chr2 242193529 + 208010948 208011717 L1PB1 5432 + 4681 5391 31380 4 0 1 118 0 2 6 10 1 272 4 6 12 3 2 9 30 6 18 1 0 8 1 0 10 2 0 3 2 0 8 2 0 53 2 1 14 4 3 39 7 6 13 3 0 5 1 0 8 9 0 18 7 4 14 6 4 24 1 0 18 chain 17088 chr2 242193529 + 208023425 208023761 MER1B 344 + 0 329 59714 18 14 13 40 0 4 7 24 23 111 4 0 38 44 31 16 0 8 20 chain 4465 chr2 242193529 + 208027092 208027164 MER50 708 + 527 590 88525 32 9 0 31 chain 62920 chr2 242193529 + 208057905 208058647 L1PA5 6144 + 5097 5872 25651 335 0 18 17 0 2 309 0 13 81 chain 31371 chr2 242193529 + 208058939 208059321 L1PA6 6164 + 5782 6161 40835 370 3 0 9 chain 280558 chr2 242193529 + 208080829 208085331 L1PB1 5432 + 1344 5423 7407 43 2 0 17 3 7 258 0 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0 45 0 2 6 1 0 5 chain 23751 chr2 242193529 + 208151410 208151702 L1PA16 3655 + 1485 1777 51194 292 chain 21471 chr2 242193529 + 208162575 208162856 AluSp 311 + 0 293 54553 52 0 18 203 10 4 16 chain 53529 chr2 242193529 + 208199554 208200169 LTR5_Hs 974 + 0 613 28385 288 0 1 128 3 0 196 chain 13272 chr2 242193529 + 208279803 208279972 L1PA16 3655 + 2191 2360 64676 169 chain 72937 chr2 242193529 + 208316622 208317430 L1PA3long 6157 + 4635 5447 23326 675 0 4 133 chain 7460 chr2 242193529 + 208317430 208317535 MER30 238 + 127 238 76222 23 4 10 78 chain 140133 chr2 242193529 + 208395713 208397312 L1PA6 6164 + 4556 6162 13086 762 0 4 17 0 2 577 0 1 243 chain 30885 chr2 242193529 + 208416582 208417019 MLT2A1 477 + 0 477 41234 150 0 5 14 4 1 12 0 1 21 0 1 128 3 4 20 2 3 25 4 0 10 7 45 37 chain 44375 chr2 242193529 + 208419803 208420294 L1PA4 6152 + 5659 6152 31898 485 0 2 6 chain 7095 chr2 242193529 + 208443049 208443139 MER2 342 + 111 213 77280 7 0 12 83 chain 27358 chr2 242193529 + 208497175 208497483 L1PA5 6144 + 5836 6144 45752 308 chain 13851 chr2 242193529 + 208537869 208538041 L1PA16 3655 + 3406 3578 63796 172 chain 162577 chr2 242193529 + 208661950 208663751 L1PA3long 6157 + 4354 6157 11571 922 0 2 879 chain 458072 chr2 242193529 + 208760978 208766284 L1PA5 6144 + 839 6137 4180 529 5 1 259 6 1 1124 0 3 17 0 4 346 0 2 23 4 0 131 1 0 365 0 11 555 3 0 198 20 8 482 4 0 399 0 4 695 0 1 140 chain 26163 chr2 242193529 + 208768472 208768833 THE1B 368 + 3 368 47483 166 1 0 18 0 1 13 18 23 82 1 0 4 1 2 16 1 0 40 chain 253232 chr2 242193529 + 208773457 208776294 L1PA3long 6157 + 3305 6157 8152 434 14 1 80 0 1 533 0 4 135 0 1 142 0 21 401 0 1 1098 chain 20833 chr2 242193529 + 208777978 208778225 L1PA7 6471 + 5692 5939 55322 247 chain 466259 chr2 242193529 + 208784256 208789614 L1PA4 6152 + 1 5337 3956 525 4 0 8 3 7 35 1 0 40 4 0 217 17 0 2215 1 0 391 0 1 137 4 0 1727 0 4 29 chain 4285 chr2 242193529 + 208796073 208796123 MLT1D 503 + 125 176 89599 23 0 1 27 chain 549358 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2974 2 1 605 0 2 175 chain 93320 chr2 242193529 + 208900114 208903268 HERVH-int 3825 + 361 3825 7725 112 14 15 45 1 0 8 7 95 19 2 1 42 2 1 80 16 15 74 0 1 137 34 22 308 6 5 232 0 5 15 0 1 105 11 13 288 0 4 119 10 14 600 0 10 373 8 218 226 1 2 259 chain 20733 chr2 242193529 + 208905072 208905467 LTR7 482 + 0 482 55449 68 9 47 79 87 130 54 0 4 37 12 14 49 chain 29013 chr2 242193529 + 208907907 208908361 LTR7 482 + 0 474 43299 86 56 0 15 21 66 60 3 34 213 chain 13409 chr2 242193529 + 208913090 208913413 L1PB1 5432 + 5130 5422 64455 4 1 0 10 1 0 10 20 14 43 11 10 15 1 0 39 10 9 11 2 0 7 16 6 18 3 1 5 1 0 14 3 1 23 1 0 21 1 0 13 1 0 18 chain 109852 chr2 242193529 + 208995318 208996609 L1PA7 6471 + 4607 5896 17091 342 1 0 658 8 7 282 chain 19704 chr2 242193529 + 209002770 209003088 LTR27 711 + 8 326 56778 98 49 50 34 5 4 109 0 1 18 1 0 4 chain 64490 chr2 242193529 + 209018197 209019240 MER11B 1079 + 0 1064 25313 319 0 1 137 18 17 22 24 12 15 0 1 12 8 8 32 14 14 4 0 1 67 127 165 52 0 1 37 0 1 41 0 1 73 0 1 21 11 0 9 chain 405559 chr2 242193529 + 209021185 209026294 L1PA7 6471 + 1335 6467 5084 470 0 1 358 0 1 99 1 0 84 0 1 281 20 7 4 0 1 672 4 14 602 11 12 60 0 1 142 0 1 185 0 1 59 21 12 265 0 4 282 0 1 53 8 9 142 4 1 432 0 8 23 3 7 154 48 60 292 0 1 330 chain 38880 chr2 242193529 + 209078019 209078469 LTR7 482 + 0 482 35446 225 0 1 40 0 31 185 chain 290490 chr2 242193529 + 209078471 209082111 HERVH-int 3825 + 0 3825 7113 157 2 1 175 1 0 202 6 4 6 0 1 23 27 0 8 1 0 4 0 16 6 3 1 15 1 0 12 33 7 19 24 0 34 8 29 9 1 0 50 0 1 4 2 0 646 9 0 45 1 0 210 4 31 370 10 15 347 1 0 644 0 3 25 8 218 487 chain 39395 chr2 242193529 + 209083928 209084376 LTR7 482 + 0 482 35083 266 0 31 156 0 3 26 chain 105690 chr2 242193529 + 209103795 209105321 L1PB1 5432 + 3893 5399 17599 128 1 0 281 1 7 320 0 2 74 0 2 97 0 2 6 22 26 185 5 0 75 16 16 17 4 3 10 1 0 12 9 5 7 2 0 47 23 21 45 1 0 15 24 12 18 3 1 5 1 0 14 2 0 24 1 0 22 1 0 7 chain 2192 chr2 242193529 + 209121056 209121079 L1PB1 5432 + 5347 5370 105325 23 chain 3389 chr2 242193529 + 209121080 209121130 L1PB1 5432 + 5370 5417 96187 21 1 0 13 1 0 9 1 0 4 chain 552991 chr2 242193529 + 209128529 209134554 L1PA2 6032 + 0 6028 544 940 0 2 1019 0 1 4066 chain 38716 chr2 242193529 + 209155772 209156330 MER41A 554 + 0 546 35551 126 0 4 50 10 13 163 27 4 10 8 0 35 0 4 70 1 2 21 0 7 37 chain 50984 chr2 242193529 + 209157030 209157674 PABL_A 660 + 0 660 29220 20 1 5 37 0 5 307 1 0 212 0 8 57 1 0 4 0 1 4 chain 506422 chr2 242193529 + 209163423 209169045 L1PA3long 6157 + 0 6152 2915 152 0 1 61 0 407 155 0 128 162 0 2 1021 0 1 2746 17 7 489 0 1 819 chain 21047 chr2 242193529 + 209187033 209187320 L1PA7 6471 + 6184 6465 55065 38 8 7 67 15 13 149 3 0 7 chain 45819 chr2 242193529 + 209206896 209207502 L1PA8 5853 + 5243 5853 31153 251 12 21 49 1 0 47 2 0 71 8 6 10 2 3 59 2 1 92 chain 447020 chr2 242193529 + 209241960 209247483 L1PA7 6471 + 832 6462 4433 426 0 1 252 0 1 260 1 2 426 0 3 5 1 10 342 0 3 78 6 0 64 0 3 156 7 9 315 30 1 22 10 9 127 1 0 413 0 1 14 0 1 58 24 0 16 0 5 39 0 121 258 8 0 186 5 6 203 1 9 88 0 15 281 2 0 560 1 0 91 0 3 446 0 1 300 chain 20948 chr2 242193529 + 209258164 209258408 L1PA7 6471 + 6221 6465 55199 244 chain 516818 chr2 242193529 + 209261434 209267517 L1PA5 6144 + 5 6130 2431 46 0 4 65 4 18 21 0 12 670 20 24 26 0 10 248 0 3 17 9 0 187 0 1 582 1 0 375 0 1 519 1 2 674 1 0 769 0 2 523 1 2 1324 chain 40256 chr2 242193529 + 209284728 209285217 L1PA5 6144 + 3014 3500 34471 162 1 0 26 3 1 297 chain 234394 chr2 242193529 + 209285217 209287848 L1PA5 6144 + 3501 6144 8623 824 0 1 23 0 4 944 0 5 786 3 5 51 chain 54104 chr2 242193529 + 209295011 209295885 L1PB1 5432 + 4579 5422 28190 42 0 1 182 0 7 77 14 15 200 1 2 10 17 1 21 1 0 9 1 0 10 2 0 3 2 0 9 3 1 51 2 1 15 1 0 45 1 0 5 0 2 8 3 0 6 16 6 16 10 7 15 2 0 44 12 14 18 chain 41266 chr2 242193529 + 209299312 209299790 LTR7 482 + 0 482 33811 382 0 2 35 12 14 49 chain 283140 chr2 242193529 + 209299792 209303239 HERVH-int 3825 + 0 3825 7334 484 0 56 30 1 0 10 1 0 24 6 56 37 1 0 16 6 7 6 1 0 29 0 1 7 0 2 13 0 3 505 0 1 5 1 0 389 8 35 60 0 1 238 0 10 378 0 1 4 1 0 47 1 0 100 0 3 181 1 11 185 7 8 75 0 3 49 9 11 39 8 218 226 1 2 32 0 2 225 chain 38079 chr2 242193529 + 209304486 209304932 LTR7 482 + 0 482 36009 230 0 31 121 0 2 28 0 1 6 12 14 49 chain 62866 chr2 242193529 + 209306210 209306970 LTR17 781 + 0 781 25662 119 1 10 170 10 0 28 0 1 61 1 0 276 1 0 51 0 22 35 0 1 7 chain 56550 chr2 242193529 + 209333042 209333654 L1PA3long 6157 + 4620 5233 27409 556 0 1 56 chain 65648 chr2 242193529 + 209352590 209353313 L1PA3long 6157 + 5377 6101 25046 471 0 1 252 chain 22798 chr2 242193529 + 209353616 209353870 L1PA4 6152 + 5892 6146 52662 254 chain 44199 chr2 242193529 + 209356027 209356579 MER41A 554 + 0 554 32013 193 0 2 359 chain 287107 chr2 242193529 + 209371719 209375158 L1PA7 6471 + 3016 6470 7225 481 1 0 33 0 2 18 0 4 433 1 2 15 8 6 7 0 1 239 0 1 517 0 3 26 0 2 815 1 0 267 0 1 221 0 1 28 0 1 127 2 1 187 1 4 11 chain 92441 chr2 242193529 + 209387196 209388502 LTR12C 1709 + 0 1709 19279 277 4 0 12 2 7 34 11 55 70 7 10 9 3 0 217 0 41 78 0 81 29 0 37 29 3 132 27 0 1 78 35 4 81 1 0 87 0 102 123 5 4 84 chain 26947 chr2 242193529 + 209419401 209419686 AluYb8 318 + 23 308 46344 285 chain 516849 chr2 242193529 + 209488011 209494440 L1PA7 6471 + 19 6468 2427 61 0 6 326 1 0 62 1 0 854 0 1 19 9 8 575 0 1 51 0 12 97 0 2 192 0 1 71 0 1 72 5 4 84 1 0 113 21 0 250 0 1 213 0 4 403 1 0 23 1 0 48 0 5 97 1 0 387 0 1 34 0 1 88 0 4 373 5 6 101 3 1 6 0 2 71 0 1 203 1 0 32 10 20 453 8 1 159 0 4 643 0 2 43 2 0 8 6 7 141 chain 45267 chr2 242193529 + 209495053 209495629 L1P3 4156 + 663 1241 31438 12 4 5 30 12 13 518 chain 16548 chr2 242193529 + 209548605 209548967 THE1D 372 + 7 355 60311 8 0 2 12 1 0 19 9 0 9 95 88 39 7 9 20 1 0 5 0 1 6 1 0 130 chain 59165 chr2 242193529 + 209595404 209596112 L1PA6 6164 + 5451 6159 26617 296 1 4 403 3 0 5 chain 12685 chr2 242193529 + 209716425 209716644 MER30 238 + 0 235 65646 23 26 25 35 0 1 6 1 0 16 4 24 63 3 0 42 chain 129140 chr2 242193529 + 209794920 209796502 THE1A-int 1579 + 0 1579 14129 44 0 1 4 1 0 95 2 0 56 2 3 340 4 0 633 1 2 249 5 6 146 chain 24458 chr2 242193529 + 209796502 209796863 THE1A 353 + 0 353 50095 25 1 2 56 0 1 4 10 9 13 1 0 25 7 0 63 1 0 155 chain 12990 chr2 242193529 + 209942113 209942306 MER1B 344 + 139 339 65130 68 0 5 55 20 22 50 chain 22073 chr2 242193529 + 210054999 210055354 THE1C 375 + 0 375 53734 125 22 34 27 0 1 6 8 11 96 0 4 31 14 17 5 3 0 18 chain 92373 chr2 242193529 + 210057628 210059021 MER11C 1089 + 0 1073 19291 434 2 1 132 2 1 313 1 0 27 317 0 165 chain 16016 chr2 242193529 + 210062063 210062397 THE1B 368 + 0 368 61010 44 0 15 22 0 4 5 2 0 82 72 81 31 27 35 49 chain 61854 chr2 242193529 + 210102777 210103482 L1PA5 6144 + 5444 6142 25904 491 3 0 200 4 0 7 chain 3148 chr2 242193529 + 210158787 210158821 Tigger14a 266 + 114 148 98387 34 chain 518207 chr2 242193529 + 210181083 210187464 L1PA7 6471 + 67 6461 2356 209 1 2 4 1 0 118 4 3 188 0 1 209 4 6 70 0 2 330 1 5 341 1 0 1019 0 1 145 0 10 156 0 4 26 0 1 271 2 0 414 5 4 387 55 22 472 0 1 26 9 13 46 3 1 100 0 4 550 0 4 109 1 0 98 0 1 182 9 11 256 0 12 235 0 1 170 0 1 40 1 0 113 chain 6647 chr2 242193529 + 210223436 210223518 MER5A1 166 + 70 152 78824 82 chain 8683 chr2 242193529 + 210226316 210226460 LTR14B 630 + 4 359 73255 52 0 179 37 23 55 32 chain 69388 chr2 242193529 + 210257801 210258572 L1PA4 6152 + 5381 6152 24144 771 chain 18025 chr2 242193529 + 210333244 210333468 L1PA7 6471 + 4211 4436 58628 31 4 5 189 chain 38972 chr2 242193529 + 210333468 210333970 L1PA7 6471 + 4439 4953 35375 237 1 5 11 6 14 247 chain 53027 chr2 242193529 + 210333973 210334617 L1PA7 6471 + 4957 5621 28566 524 1 16 28 0 1 73 0 4 18 chain 22062 chr2 242193529 + 210334617 210334892 L1PA7 6471 + 5624 5899 53747 10 1 0 69 1 2 194 chain 47508 chr2 242193529 + 210334895 210335461 L1PA7 6471 + 5903 6469 30479 566 chain 26535 chr2 242193529 + 210336141 210336493 THE1A 353 + 0 353 46922 84 2 1 25 1 0 86 0 2 102 1 2 51 chain 464033 chr2 242193529 + 210350623 210355919 L1PA4 6152 + 1 5303 4018 1840 0 4 2158 0 1 175 0 1 1123 chain 75604 chr2 242193529 + 210430306 210431185 MER11D 897 + 0 897 22690 10 1 0 186 3 0 85 1 0 305 1 24 287 chain 446863 chr2 242193529 + 210445919 210451384 L1PA7 6471 + 759 6371 4439 231 1 0 86 0 1 52 15 122 90 0 1 432 0 3 50 1 5 41 0 1 22 0 3 14 19 12 20 7 9 206 0 4 52 12 4 199 0 1 477 4 5 194 0 4 403 2 0 116 1 0 344 0 4 42 1 0 582 6 12 69 0 4 187 14 15 228 1 0 486 0 13 16 7 8 312 0 1 300 4 10 119 chain 23052 chr2 242193529 + 210489756 210490015 AluY 311 + 40 300 52288 86 0 1 173 chain 529899 chr2 242193529 + 210505420 210511537 L1PA4 6152 + 17 6146 1830 169 0 1 295 0 1 81 6 7 97 7 8 22 1 2 356 8 9 17 9 4 37 1 9 24 0 3 2126 1 0 952 0 1 99 6 8 52 0 2 18 0 1 64 1 0 352 4 3 241 6 0 226 0 4 670 2 1 167 chain 13530 chr2 242193529 + 210526059 210526218 L1PA7 6471 + 6137 6296 64275 159 chain 13056 chr2 242193529 + 210526244 210526392 L1PA7 6471 + 6322 6470 65015 148 chain 9399 chr2 242193529 + 210554652 210554758 L1HS 6032 + 5926 6032 71703 106 chain 41799 chr2 242193529 + 210598312 210598960 L1PREC2 3366 + 181 815 33491 16 11 6 6 1 0 5 0 2 16 1 0 12 2 1 9 1 0 4 1 0 33 2 1 113 11 10 25 21 19 9 1 0 260 7 6 81 chain 31768 chr2 242193529 + 210614665 210615031 L1PA7 6471 + 6091 6457 40521 366 chain 17958 chr2 242193529 + 210619888 210620092 L1PA7 6471 + 6264 6468 58693 204 chain 49448 chr2 242193529 + 210734880 210735578 LTR12_ 688 + 0 688 29788 91 0 2 29 1 26 19 45 3 78 0 1 108 0 1 71 23 26 233 chain 167219 chr2 242193529 + 210760550 210762399 L1PA3long 6157 + 2684 4550 11257 12 0 1 263 0 1 215 0 1 113 0 10 1030 0 4 216 chain 169697 chr2 242193529 + 210770678 210772875 L1PA8 5853 + 3650 5847 11116 35 1 3 147 1 2 378 4 3 122 0 2 14 2 1 620 0 1 6 1 0 25 2 0 379 0 6 149 0 1 20 1 0 46 2 0 58 35 32 40 2 1 19 1 0 87 chain 30327 chr2 242193529 + 210774007 210774356 L1PA4 6152 + 5803 6152 41732 349 chain 110962 chr2 242193529 + 210820378 210821825 L1PA8 5853 + 4053 5791 16943 149 1 2 11 0 1 155 0 2 118 0 1 195 9 14 176 20 298 63 0 10 273 1 0 43 1 0 46 2 0 69 1 0 8 13 13 40 2 1 19 2 1 30 chain 164164 chr2 242193529 + 210868435 210870644 L1PA10 4194 + 1925 4161 11471 181 21 22 93 3 7 425 1 2 21 4 8 9 0 3 64 4 5 61 1 0 129 7 1 97 0 1 77 4 1 4 0 1 154 3 21 20 0 1 396 4 6 109 0 2 266 6 4 45 chain 135729 chr2 242193529 + 210904206 210905709 L1PA3long 6157 + 4652 6156 13465 102 0 1 1401 chain 20822 chr2 242193529 + 210912661 210912934 THE1A 353 + 27 300 55335 79 5 4 185 0 1 4 chain 20625 chr2 242193529 + 210927508 210927883 THE1D 372 + 0 372 55601 160 98 95 25 0 1 60 1 0 31 chain 3424 chr2 242193529 + 210932099 210932137 tRNA-Gly-GGA 38 + 0 38 95879 38 chain 3174 chr2 242193529 + 210942464 210942524 L1ME1 1623 + 1093 1153 98148 32 7 8 15 1 0 5 chain 131381 chr2 242193529 + 210950125 210951591 SVA_C 1631 + 0 1618 13882 10 1 7 7 0 12 610 0 40 223 1 95 614 chain 51301 chr2 242193529 + 211002864 211003426 L1PA2 6032 + 5276 5841 29129 464 1 4 97 chain 103098 chr2 242193529 + 211038543 211039766 L1PA6 6164 + 4781 6143 17941 50 0 1 90 2 134 161 0 1 97 0 3 689 8 11 9 1 0 116 chain 378910 chr2 242193529 + 211135612 211140428 HERVL-int 5654 + 713 5654 5504 42 1 2 18 8 9 325 8 7 7 0 1 1028 1 4 362 1 0 55 0 1 7 0 24 459 34 36 268 5 19 559 3 7 31 2 3 112 0 31 254 3 0 1049 5 52 169 chain 20896 chr2 242193529 + 211140428 211140772 MLT2A2 560 + 0 458 55261 169 60 65 67 3 112 45 chain 9020 chr2 242193529 + 211199937 211200075 L1PA8 5853 + 5718 5846 72517 19 20 11 15 1 0 83 chain 113576 chr2 242193529 + 211216445 211218202 L1PB1 5432 + 2971 5423 16605 40 0 4 556 10 0 102 10 19 32 3 1 164 1 2 71 1 0 72 0 1 19 8 6 265 66 789 24 1 0 8 1 0 10 2 0 3 2 0 9 6 4 48 26 24 37 1 0 15 2 0 6 57 44 20 9 8 30 1 0 19 chain 549284 chr2 242193529 + 211219320 211225344 L1PA2 6032 + 0 6032 794 74 0 1 182 1 0 2985 0 1 1273 0 5 884 1 3 458 5 0 7 0 5 154 chain 10634 chr2 242193529 + 211229719 211229925 L1MA3 4352 + 4154 4347 69158 82 4 0 11 18 16 19 1 0 6 1 0 26 1 0 10 10 6 17 chain 22077 chr2 242193529 + 211240829 211241096 AluY 311 + 28 294 53730 103 1 2 136 2 0 25 chain 45638 chr2 242193529 + 211246753 211247367 L1PA8 5853 + 5249 5853 31241 313 1 0 20 0 6 22 2 0 19 0 1 49 1 0 8 2 1 11 6 14 24 22 4 15 5 4 83 1 0 10 chain 184145 chr2 242193529 + 211262256 211265480 HERVH-int 3825 + 78 3825 10380 74 0 2 20 15 32 11 44 63 35 30 29 20 16 16 16 22 21 21 111 334 5 0 1 364 43 50 44 26 20 168 15 5 173 0 1 4 1 0 85 0 27 50 0 1 22 3 0 8 0 3 31 1 0 252 5 10 312 0 1 5 5 4 323 1 0 28 1 0 20 11 0 202 427 680 154 chain 6730 chr2 242193529 + 211287135 211287311 L1PA16 3655 + 3402 3578 78539 14 9 8 36 63 64 54 chain 15482 chr2 242193529 + 211428001 211428221 L1PA8 5853 + 5637 5853 61680 45 1 0 8 8 7 43 2 1 19 1 0 93 chain 114675 chr2 242193529 + 211507675 211509350 L1PA8 5853 + 4386 5853 16437 339 1 0 4 1 2 256 0 4 16 0 2 58 4 5 333 34 5 73 179 0 37 0 1 43 1 0 45 2 0 57 18 15 11 1 0 38 0 1 4 8 7 18 1 0 93 chain 13283 chr2 242193529 + 211513246 211513387 AluYb8 318 + 177 318 64655 141 chain 7890 chr2 242193529 + 211535652 211535742 5S 121 + 0 90 75147 90 chain 82123 chr2 242193529 + 211577444 211578516 L1PA10 4194 + 3068 4146 21221 311 6 5 4 0 1 135 0 1 118 0 4 6 7 11 425 2 1 5 0 1 19 5 2 29 chain 58851 chr2 242193529 + 211580206 211581253 L1PB1 5432 + 4529 5418 26720 45 1 0 47 1 2 9 8 4 174 3 0 293 130 11 24 1 0 8 1 0 10 6 2 11 6 4 40 7 6 18 1 0 35 9 8 16 3 0 9 40 27 14 2 0 24 1 0 21 1 0 9 0 1 5 2 0 12 chain 4313 chr2 242193529 + 211586912 211586965 MLT1C 463 + 26 79 89418 53 chain 5832 chr2 242193529 + 211613485 211613571 L1MA1 4479 + 4080 4162 81775 27 2 0 35 1 0 10 1 0 10 chain 90565 chr2 242193529 + 211629102 211630125 L1PA4 6152 + 4196 5218 19585 58 2 1 963 chain 5751 chr2 242193529 + 211684096 211684168 LTR26 622 + 0 72 82124 72 chain 22645 chr2 242193529 + 211760923 211761219 AluSc5 308 + 0 306 52917 78 0 9 176 10 13 24 2 0 6 chain 5839 chr2 242193529 + 211822026 211822126 L1MA5A 2387 + 2118 2219 81741 37 2 0 12 1 5 15 2 1 31 chain 69480 chr2 242193529 + 211862812 211863788 LTR12 884 + 0 869 24125 24 1 0 38 107 0 32 0 2 244 3 4 34 2 0 491 chain 1204 chr2 242193529 + 211862891 211862945 LTR12 884 + 276 330 84501 54 chain 6672 chr2 242193529 + 211866926 211867025 LTR9B 643 + 472 561 78724 53 11 1 35 chain 557173 chr2 242193529 + 211888536 211894571 L1PA2 6032 + 1 6029 290 995 7 0 273 4 5 2779 2 0 433 0 1 1542 chain 12499 chr2 242193529 + 211953245 211953391 L1PA7 6471 + 6321 6465 65986 138 2 0 6 chain 82769 chr2 242193529 + 211971287 211972525 L1PA13 3608 + 2091 3481 21070 29 0 1 21 1 9 85 0 1 108 1 4 99 6 10 170 6 0 11 1 135 28 4 5 90 0 7 99 0 4 79 29 36 7 1 0 28 20 19 97 2 0 62 1 0 54 1 0 4 5 4 46 2 0 5 2 0 17 1 0 16 chain 4673 chr2 242193529 + 212003453 212003534 MER51A 677 + 2 82 87426 36 12 11 33 chain 528925 chr2 242193529 + 212054824 212060956 L1PA5 6144 + 3 6130 1885 321 0 3 237 0 4 6 0 15 1724 1 0 885 3 0 75 7 1 1295 1 0 315 0 1 401 17 1 96 1 0 747 chain 114278 chr2 242193529 + 212106075 212107645 THE1B-int 1605 + 0 1600 16507 68 0 1 10 1 7 24 10 13 278 1 3 18 4 29 600 39 44 185 5 1 52 23 15 252 chain 23453 chr2 242193529 + 212107650 212108014 THE1B 368 + 0 368 51670 169 1 0 23 46 51 59 2 1 8 0 1 56 chain 45371 chr2 242193529 + 212148674 212149173 L1PA3long 6157 + 5656 6157 31382 494 0 2 5 chain 132286 chr2 242193529 + 212166435 212168049 L1PA8A 6298 + 4678 6290 13796 141 6 0 135 1 2 533 0 3 252 13 12 252 0 1 281 chain 3024 chr2 242193529 + 212197070 212197185 LOR1a 498 + 323 432 99555 23 56 51 9 2 1 25 chain 87160 chr2 242193529 + 212212268 212213364 L1PA8A 6298 + 4534 5630 20198 291 6 2 28 1 0 6 0 1 353 1 0 17 0 1 129 0 1 36 0 1 89 1 4 116 2 1 20 chain 30919 chr2 242193529 + 212275554 212275920 L1P2 5180 + 1869 2235 41202 366 chain 6519 chr2 242193529 + 212288461 212288546 MER61A 341 + 44 128 79276 41 1 0 43 chain 13069 chr2 242193529 + 212332056 212332426 THE1B 368 + 0 368 64985 44 198 196 128 chain 80173 chr2 242193529 + 212367311 212368569 L1PB1 5432 + 4190 5424 21595 244 0 1 46 0 1 4 1 0 113 6 10 17 3 0 56 0 2 208 1 2 98 1 4 18 13 15 17 0 1 5 2 1 29 34 32 24 1 0 9 16 11 9 2 0 52 1 0 13 6 5 44 1 0 15 3 0 7 14 5 19 8 5 14 2 0 24 1 0 21 1 0 13 2 1 15 1 0 4 chain 3198 chr2 242193529 + 212417571 212417606 Tigger4a 237 + 202 237 97914 35 chain 32882 chr2 242193529 + 212440122 212440548 MLT2A1 477 + 0 477 39599 142 0 1 26 1 5 204 5 51 48 chain 451289 chr2 242193529 + 212440548 212446188 HERVL-int 5654 + 0 5644 4355 245 4 0 222 3 8 229 1 2 72 33 1 97 12 13 35 0 3 191 4 0 248 0 1 11 0 1 72 15 45 607 8 6 217 0 1 538 23 21 158 1 2 513 0 1 277 0 1 948 2 1 5 0 1 425 2 0 216 0 1 148 0 3 58 chain 32878 chr2 242193529 + 212446198 212446678 MLT2A1 477 + 0 477 39604 142 0 1 26 1 5 211 60 52 40 chain 4213 chr2 242193529 + 212466209 212466256 MER8 282 + 2 49 90045 47 chain 71664 chr2 242193529 + 212585773 212586617 L1P1 4361 + 3481 4341 23619 429 0 19 221 1 0 161 1 0 17 2 1 12 chain 69691 chr2 242193529 + 212701889 212702641 L1HS 6032 + 5278 6030 24075 752 chain 19778 chr2 242193529 + 212715476 212715841 THE1D 372 + 2 361 56703 54 31 22 22 3 5 58 49 53 7 4 0 52 0 1 85 chain 3789 chr2 242193529 + 212724340 212724381 THE1B-int 1605 + 1559 1600 92926 41 chain 242897 chr2 242193529 + 212753339 212756641 L1P2 5180 + 565 3865 8401 171 43 22 29 3 18 331 1 0 83 10 9 116 62 63 97 9 5 249 8 10 558 0 1 248 16 20 76 0 1 517 2 1 495 19 21 159 chain 412888 chr2 242193529 + 212757332 212762786 L1PA7 6471 + 964 6455 4991 61 44 65 24 22 5 126 4 29 5 1 0 9 8 9 51 37 39 71 109 118 26 4 4 40 68 77 36 15 15 310 0 1 554 1 2 154 0 1 688 14 13 73 0 3 929 0 1 947 2 1 90 3 2 419 20 6 121 3 1 218 7 6 6 0 1 134 chain 540871 chr2 242193529 + 212785128 212791268 L1PA4 6152 + 0 6150 1290 796 0 1 174 0 1 922 0 5 576 0 1 1702 0 1 901 0 1 1069 chain 246018 chr2 242193529 + 212858893 212861698 L1PA5 6144 + 3322 6131 8328 1076 1 0 6 2 0 600 0 1 98 0 1 189 1 5 69 0 1 763 chain 524808 chr2 242193529 + 212875721 212881888 L1PA5 6144 + 0 6143 2061 62 1 0 58 0 14 105 0 5 304 0 1 152 0 1 461 15 6 2816 0 1 518 8 0 879 1 0 307 1 4 382 24 0 10 15 12 37 3 0 8 chain 364468 chr2 242193529 + 212884181 212888599 L1PA7 6471 + 2044 6459 5741 588 0 1 160 0 1 32 29 15 45 0 4 247 18 12 76 3 4 268 1 0 39 0 1 7 0 4 186 1 0 359 0 1 112 4 3 26 0 1 38 0 2 280 0 1 469 0 1 1101 0 1 221 1 2 107 chain 5764 chr2 242193529 + 212992110 212992176 Tigger3b 1229 + 38 104 82071 66 chain 21912 chr2 242193529 + 213083716 213084038 MER1A 529 + 204 523 53959 94 5 0 30 7 8 63 0 3 55 16 14 52 chain 89444 chr2 242193529 + 213256599 213257664 L1PA7 6471 + 5395 6467 19765 226 1 0 77 0 2 133 1 2 156 5 7 69 0 1 388 0 2 9 chain 122695 chr2 242193529 + 213277325 213278886 THE1B-int 1605 + 17 1605 15084 90 0 3 320 1 26 63 1 0 537 5 4 291 0 1 253 chain 4848 chr2 242193529 + 213301018 213301096 MADE1 96 + 0 95 86437 23 8 25 47 chain 23785 chr2 242193529 + 213328811 213329162 THE1B 368 + 0 368 51132 4 0 1 39 0 15 81 3 0 29 1 0 28 4 0 39 13 14 56 5 13 49 chain 123237 chr2 242193529 + 213329162 213330736 THE1B-int 1605 + 0 1598 14987 24 3 4 325 4 1 74 1 26 428 6 7 669 1 0 12 3 4 24 chain 54684 chr2 242193529 + 213368367 213368987 L1PA5 6144 + 3933 4556 27980 21 0 1 384 0 2 215 chain 118180 chr2 242193529 + 213403416 213404723 L1PA4 6152 + 3847 5155 15853 91 0 1 1216 chain 10165 chr2 242193529 + 213406648 213406781 LTR10F 562 + 431 562 70075 43 2 0 88 chain 174209 chr2 242193529 + 213409083 213411399 Harlequin-int 5206 + 175 2468 10887 33 19 17 37 25 27 80 8 4 109 8 1 118 5 10 333 0 5 135 5 6 13 1 0 5 10 11 171 2 0 146 18 12 115 1 2 67 18 1 70 0 5 228 4 0 532 chain 34500 chr2 242193529 + 213411950 213412446 LTR10F 562 + 0 512 38353 81 7 12 14 17 0 123 23 53 188 2 0 41 chain 13091 chr2 242193529 + 213430377 213430581 MER30 238 + 18 238 64943 90 3 0 6 4 26 34 18 15 49 chain 69793 chr2 242193529 + 213446564 213447533 HERVK11-int 2540 + 1378 2303 24045 266 0 3 72 17 12 104 1 0 122 1 0 67 1 0 80 0 4 121 95 52 22 chain 69022 chr2 242193529 + 213448611 213449649 MER11A 1151 + 0 1151 24207 22 1 2 61 0 91 47 4 8 9 0 1 51 10 6 142 6 7 91 0 1 60 4 0 6 6 10 69 5 6 109 30 63 22 18 0 36 0 1 60 6 7 163 chain 38015 chr2 242193529 + 213477296 213477861 THE1D-int 1627 + 1055 1622 36060 109 59 56 152 4 5 184 0 1 25 6 9 26 chain 15773 chr2 242193529 + 213486379 213486579 L1MA4 2864 + 2396 2597 61315 98 0 1 102 chain 43884 chr2 242193529 + 213509592 213510088 L1P1 4361 + 2906 3403 32200 272 0 1 224 chain 47081 chr2 242193529 + 213536801 213537322 L1PA3long 6157 + 5635 6157 30620 189 0 1 332 chain 39785 chr2 242193529 + 213552628 213553179 MLT2A2 560 + 0 560 34833 35 0 5 140 1 0 86 24 24 109 3 14 47 7 1 99 chain 5809 chr2 242193529 + 213598737 213598803 MER41E 591 + 0 66 81882 66 chain 11180 chr2 242193529 + 213601662 213601833 Tigger3a 397 + 45 268 68286 24 0 60 7 1 0 3 9 0 17 1 3 109 chain 5615 chr2 242193529 + 213612598 213612667 HY3 101 + 31 100 82729 69 chain 12062 chr2 242193529 + 213615892 213616055 L1PA8 5853 + 5688 5850 66735 6 0 1 41 7 6 18 1 0 90 chain 30764 chr2 242193529 + 213642405 213643030 MLT2A1 477 + 0 385 41337 169 4 1 9 0 1 24 238 0 181 chain 15866 chr2 242193529 + 213642674 213642840 AluYa5 310 + 135 301 61205 166 chain 50788 chr2 242193529 + 213660443 213661073 LTR14B 630 + 0 630 29286 77 0 1 4 2 1 547 chain 123631 chr2 242193529 + 213677127 213678530 L1HS 6032 + 1874 3277 14912 698 5 0 9 1 6 690 chain 3577 chr2 242193529 + 213690988 213691028 MLT2B3 573 + 533 573 94609 40 chain 6077 chr2 242193529 + 213701772 213701843 LTR12D 1347 + 622 693 80812 71 chain 11095 chr2 242193529 + 213701939 213702468 LTR12D 1347 + 438 1093 68415 86 78 0 12 1 32 14 34 88 16 29 23 31 182 308 33 2 1 11 chain 108550 chr2 242193529 + 213718307 213719616 LTR12C 1709 + 0 1310 17245 101 8 7 201 0 1 4 1 0 354 1 3 166 1 0 274 1 0 8 2 0 105 0 4 82 chain 58059 chr2 242193529 + 213719636 213720343 L1PA7 6471 + 5759 6467 26945 414 9 10 284 chain 23795 chr2 242193529 + 213765085 213765371 AluSc5 308 + 0 283 51116 46 3 0 237 chain 4467 chr2 242193529 + 213783282 213783330 L1HS 6032 + 5984 6032 88508 48 chain 20795 chr2 242193529 + 213918423 213918776 THE1B 368 + 0 368 55364 100 18 21 48 1 0 22 18 23 10 11 19 63 13 13 49 chain 6626 chr2 242193529 + 213962621 213962706 MLT1B 390 + 284 371 78880 34 0 1 37 0 1 14 chain 118969 chr2 242193529 + 213998572 214000133 THE1A-int 1579 + 0 1579 15709 98 0 13 143 0 1 126 14 16 50 1 0 188 56 59 885 chain 37261 chr2 242193529 + 214031192 214031605 L1PA3long 6157 + 5751 6157 36581 252 7 0 154 chain 80012 chr2 242193529 + 214173521 214174441 L1P1 4361 + 3428 4341 21623 568 4 0 154 1 0 155 1 0 23 2 1 12 chain 44816 chr2 242193529 + 214304202 214304714 MER9a2 513 + 0 513 31692 155 0 1 357 chain 3395 chr2 242193529 + 214327357 214327395 MIR 256 + 84 122 96115 38 chain 104161 chr2 242193529 + 214355027 214356199 L1PA3long 6157 + 5002 6157 17803 305 2 1 632 0 1 107 17 0 109 chain 15979 chr2 242193529 + 214499460 214499648 L1PA5 6144 + 5942 6130 61051 58 1 0 112 0 1 17 chain 57298 chr2 242193529 + 214563633 214564397 L1PA10 4194 + 3378 4161 27159 23 0 1 277 1 0 30 0 3 8 8 28 369 9 6 27 1 0 11 chain 16960 chr2 242193529 + 214596169 214596509 L1PB1 5432 + 5108 5420 59850 6 1 0 24 1 0 9 1 0 9 6 2 11 2 0 8 0 2 41 20 18 42 1 0 16 13 1 30 8 5 14 2 0 24 1 0 21 1 0 7 0 2 4 1 0 16 chain 4753 chr2 242193529 + 214650609 214650676 MLT1F2 592 + 506 570 86950 9 2 0 29 1 0 26 chain 21598 chr2 242193529 + 214672235 214672519 AluSq2 311 + 11 289 54361 123 17 11 144 chain 551975 chr2 242193529 + 214683805 214689805 L1PA2 6032 + 37 6032 607 219 1 0 109 3 0 553 1 0 5114 chain 29540 chr2 242193529 + 214718746 214719059 AluYb8 318 + 0 312 42561 132 1 0 180 chain 337577 chr2 242193529 + 214719059 214724364 L1PB1 5432 + 773 5424 6115 248 3 4 364 0 1 5 1 0 7 35 15 92 4 10 38 1 6 38 2 1 267 0 1 626 3 0 15 8 4 129 4 5 28 0 3 162 1 0 36 4 11 74 0 1 206 2 0 150 0 24 389 1 4 75 0 2 111 622 0 117 1 0 52 0 4 197 1 0 278 0 1 33 10 17 112 0 7 51 8 0 10 1 12 87 1 3 188 6 5 14 50 1 24 1 0 9 16 11 10 2 0 51 3 2 10 7 6 44 1 0 20 3 0 12 11 3 11 8 5 14 2 0 24 1 0 13 5 8 10 1 0 19 1 0 4 chain 53540 chr2 242193529 + 214722192 214722800 L1PA3long 6157 + 5565 6157 28382 375 0 1 107 17 0 109 chain 102581 chr2 242193529 + 214746728 214747853 L1PA4 6152 + 5014 6138 17998 14 1 0 1110 chain 2567 chr2 242193529 + 214756244 214756274 L1PB1 5432 + 4727 4757 103249 30 chain 42902 chr2 242193529 + 214756277 214756974 L1PB1 5432 + 4762 5427 32834 141 0 2 198 1 0 10 5 4 21 2 1 7 1 0 12 5 1 9 2 0 36 1 2 13 1 0 12 6 5 41 34 20 30 2 0 5 1 0 14 2 0 24 1 0 21 4 3 10 1 0 19 1 0 4 chain 24978 chr2 242193529 + 214783337 214783658 L1PA8 5853 + 5469 5783 49318 95 1 0 46 2 0 69 1 0 9 1 0 56 1 0 16 1 0 23 chain 110083 chr2 242193529 + 214783665 214785032 L1PA7 6471 + 5105 6470 17071 86 0 1 230 20 6 115 1 0 77 1 4 75 3 4 18 0 4 77 1 0 329 0 1 314 8 12 12 chain 73874 chr2 242193529 + 214802891 214803852 LTR5_Hs 974 + 0 974 23127 169 1 0 116 0 1 15 0 8 158 0 1 173 16 15 163 8 15 31 8 6 103 chain 10945 chr2 242193529 + 214829115 214829252 MER34A1 583 + 10 147 68624 137 chain 4040 chr2 242193529 + 214830628 214830675 MER2 342 + 136 183 91147 47 chain 6028 chr2 242193529 + 214895648 214895754 MER58A 224 + 53 160 80977 30 8 14 8 5 0 55 chain 34714 chr2 242193529 + 214925485 214925915 MER57A1 433 + 0 433 38216 270 10 13 150 chain 223534 chr2 242193529 + 214962514 214965818 L1PA11 4918 + 1616 4578 8942 197 4 1 161 0 1 134 1 0 122 0 1 29 0 4 321 0 1 96 0 1 25 0 2 13 328 0 62 7 10 19 5 9 9 1 0 140 1 2 12 0 5 203 0 1 77 4 5 22 2 0 184 0 1 180 0 2 28 8 7 219 2 1 213 5 0 177 19 9 7 0 8 56 2 1 8 2 0 72 4 2 12 1 0 19 65 47 13 2 0 11 chain 13419 chr2 242193529 + 214991855 214992033 L1PA7 6471 + 6282 6461 64441 31 9 10 138 chain 7884 chr2 242193529 + 215020184 215020290 L1MB2 1706 + 1032 1135 75169 26 3 0 77 chain 9389 chr2 242193529 + 215058166 215058379 MER20 218 + 0 218 71726 13 18 17 51 13 14 55 1 11 17 29 24 16 chain 5509 chr2 242193529 + 215065754 215065822 MLT1D 503 + 407 475 83206 68 chain 3396 chr2 242193529 + 215098970 215099038 MLT1F1 559 + 0 70 96113 26 18 20 24 chain 124240 chr2 242193529 + 215160860 215162725 L1PBa1 4058 + 10 3077 14804 16 1 0 10 1 0 11 4 2 6 1 0 255 5 0 121 3 1 65 33 0 15 5 19 27 1 0 8 1 0 16 4 3 33 14 13 104 0 1 97 77 102 325 6 7 22 1 0 8 0 1 164 2 0 30 0 3 172 23 19 113 0 1213 65 chain 242017 chr2 242193529 + 215164364 215167753 L1PB1 5432 + 2002 5391 8425 262 19 14 82 3 2 137 0 1 23 8 9 30 6 5 227 0 1 47 2 0 49 0 3 14 0 1 134 5 76 495 0 1 105 41 17 473 1 0 395 19 16 446 54 41 6 1 0 26 1 0 7 16 11 11 5 3 45 22 20 43 1 0 15 1 0 5 65 50 20 1 0 21 chain 15494 chr2 242193529 + 215168568 215168766 L1PA8 5853 + 5658 5853 61663 21 1 0 61 2 1 19 1 0 93 chain 20052 chr2 242193529 + 215183628 215183975 AluSc5 308 + 10 299 56311 43 34 25 71 57 8 142 chain 124023 chr2 242193529 + 215195116 215196840 L1PA5 6144 + 4739 6144 14843 684 1 0 345 318 0 376 chain 206300 chr2 242193529 + 215210670 215213323 MER4-int 2692 + 11 2692 9493 25 2 0 63 2 0 7 0 1 10 3 0 84 3 10 86 0 5 350 0 19 20 0 3 53 6 9 187 0 2 372 1 0 161 0 1 376 1 0 145 1 0 13 1 2 216 6 5 25 30 0 9 8 30 86 0 5 40 1 0 135 0 1 36 12 10 6 0 2 55 1 0 9 0 1 6 chain 31802 chr2 242193529 + 215213331 215213767 MER4A1 472 + 0 458 40494 140 1 2 84 18 39 193 chain 11478 chr2 242193529 + 215219533 215219724 LTR12C 1709 + 932 1086 67775 113 43 6 35 chain 536208 chr2 242193529 + 215220249 215226331 L1PA4 6152 + 6 6151 1555 245 4 0 209 6 0 120 1 0 124 1 0 336 0 1 1202 0 5 326 1 0 320 1 71 206 1 0 1463 0 1 249 0 1 85 0 1 330 1 0 517 1 0 333 chain 5839 chr2 242193529 + 215226342 215226424 LTR12C 1709 + 1496 1709 81742 19 3 134 60 chain 470840 chr2 242193529 + 215252971 215258264 L1PA4 6152 + 3 5299 3833 706 1 0 3462 0 1 643 0 2 70 0 1 411 chain 5293 chr2 242193529 + 215264376 215264584 MER63A 208 + 0 208 84229 26 81 90 36 36 27 29 chain 53535 chr2 242193529 + 215293087 215293686 L1PA5 6144 + 5542 6144 28384 204 0 3 395 chain 21091 chr2 242193529 + 215370997 215371246 AluSg 306 + 10 259 55015 249 chain 87380 chr2 242193529 + 215496723 215497795 MER11B 1079 + 0 1064 20163 264 3 0 503 7 1 113 0 1 182 chain 22261 chr2 242193529 + 215509252 215509587 MER47A 366 + 16 353 53459 18 1 0 15 20 27 141 8 5 42 1 0 89 chain 39354 chr2 242193529 + 215509825 215510303 L1PA7 6471 + 5992 6469 35114 316 2 0 141 1 2 18 chain 29200 chr2 242193529 + 215516802 215517193 MLT2A1 477 + 0 383 43046 169 4 1 9 0 1 23 1 2 121 9 1 4 0 1 51 chain 9478 chr2 242193529 + 215535246 215535557 L1MB3 1562 + 1163 1552 71525 35 33 125 14 1 0 5 17 16 24 77 67 19 5 4 52 4 3 25 chain 22559 chr2 242193529 + 215589018 215589289 L1PA5 6144 + 5872 6144 53030 195 0 1 76 chain 29831 chr2 242193529 + 215606520 215606908 MLT2A1 477 + 0 393 42206 140 1 2 27 1 5 219 chain 7525 chr2 242193529 + 215614925 215615009 MER41A 554 + 0 84 76065 84 chain 12983 chr2 242193529 + 215625052 215625201 L1PA6 6164 + 6013 6162 65135 149 chain 13602 chr2 242193529 + 215678930 215679164 L1MA3 4352 + 3847 4324 64162 22 7 249 62 1 0 54 0 7 17 2 0 19 16 14 26 1 0 7 chain 29944 chr2 242193529 + 215721609 215722046 L1PA8 5853 + 5417 5853 42108 26 3 1 115 8 7 42 2 0 69 3 2 9 9 15 37 2 1 19 1 0 20 3 4 69 chain 531174 chr2 242193529 + 215819024 215825440 L1PA7 6471 + 0 6439 1784 412 2 0 230 9 10 778 0 1 164 1 0 546 0 1 130 0 3 358 5 0 287 0 2 311 0 1 91 0 1 158 1 2 5 1 0 14 1 0 45 1 5 92 1 7 182 2 0 668 0 3 200 0 6 242 0 1 440 1 2 157 0 1 27 1 22 11 19 0 823 chain 14199 chr2 242193529 + 215838798 215838993 MER2 342 + 87 278 63319 19 4 5 115 5 0 52 chain 4490 chr2 242193529 + 215878837 215878912 MADE1 96 - 0 91 88392 34 9 25 32 chain 4702 chr2 242193529 + 215882691 215882824 L1MB8 1703 + 1430 1566 87253 49 10 12 13 41 42 20 chain 49358 chr2 242193529 + 215886421 215887143 MER4A 717 + 0 717 29816 70 2 0 10 1 0 41 1 0 24 1 2 107 0 4 11 5 1 167 1 10 49 38 28 187 1 0 6 chain 21773 chr2 242193529 + 215892838 215893099 AluSp 311 + 27 288 54133 261 chain 13787 chr2 242193529 + 215920958 215921120 L1PA7 6471 + 6154 6316 63901 162 chain 13178 chr2 242193529 + 215921121 215921271 L1PA7 6471 + 6316 6470 64815 139 0 4 11 chain 39804 chr2 242193529 + 215922302 215922748 LTR7 482 + 0 475 34820 56 2 0 190 0 31 198 chain 299111 chr2 242193529 + 215922757 215926418 HERVH-int 3825 + 0 3825 6857 210 1 12 64 6 0 246 5 0 38 1 0 10 1 0 24 28 0 15 1 0 12 3 0 8 49 7 10 1 0 42 0 20 11 2 1 49 1 0 450 16 1 211 0 1 239 8 35 1404 8 218 487 chain 40953 chr2 242193529 + 215927673 215928126 LTR7 482 + 0 482 34000 54 2 0 176 0 31 221 chain 40565 chr2 242193529 + 215957822 215958266 L1PA4 6152 + 5707 6151 34251 444 chain 7064 chr2 242193529 + 215963468 215963591 MER33 330 + 153 281 77391 32 27 32 64 chain 32049 chr2 242193529 + 215970850 215971300 L1PA8 5853 + 5412 5848 40309 118 4 0 34 1 0 46 2 0 36 17 16 5 2 0 11 2 1 9 1 0 52 2 1 19 1 0 88 chain 195504 chr2 242193529 + 215976650 215978919 L1P2 5180 + 1763 4030 9862 1370 8 7 31 1 0 859 chain 527958 chr2 242193529 + 215988102 215994568 L1PA7 6471 + 5 6468 1917 173 8 9 49 5 0 5 6 11 144 7 8 22 29 30 17 0 1 168 10 9 52 0 1 642 1 2 76 0 1 891 0 1 322 0 2 458 1 5 393 6 0 73 0 3 85 2 1 658 18 0 168 0 1 554 5 0 72 4 3 349 0 5 141 8 10 89 0 1 114 0 1 553 0 1 35 0 13 6 9 0 26 3 0 9 chain 6109 chr2 242193529 + 216069965 216070104 Tigger6a 1079 + 646 787 80698 67 22 21 16 20 23 14 chain 10248 chr2 242193529 + 216239046 216239264 MER33 330 + 68 285 69902 20 1 0 3 6 0 22 45 44 54 5 7 23 0 5 39 chain 24590 chr2 242193529 + 216268316 216268683 THE1D 372 + 1 372 49878 74 19 0 78 0 13 24 0 3 32 9 15 51 0 2 43 6 5 31 chain 325279 chr2 242193529 + 216323379 216326970 L1PA3long 6157 + 2559 6157 6303 612 1 0 774 1 2 839 3 9 1357 0 1 4 chain 35786 chr2 242193529 + 216348338 216348797 MER41A 554 + 88 554 37540 196 4 5 55 0 1 60 0 4 21 0 1 123 chain 8276 chr2 242193529 + 216351402 216351503 HY3 101 + 0 101 74223 101 chain 53985 chr2 242193529 + 216383481 216384265 Tigger1 2417 + 1246 2027 28233 42 5 4 103 24 23 204 1 0 116 38 37 182 1 2 68 chain 547968 chr2 242193529 + 216454721 216460842 L1PA5 6144 + 0 6140 865 1442 0 5 389 0 1 412 0 2 128 0 4 377 0 2 329 0 2 203 0 1 42 0 1 344 0 2 779 1 0 1675 chain 8071 chr2 242193529 + 216485486 216485587 Tigger3c 601 + 377 479 74698 32 0 1 69 chain 3588 chr2 242193529 + 216570692 216570784 MER45B 1037 + 796 887 94529 11 4 10 21 1 3 23 10 0 7 2 3 13 chain 14273 chr2 242193529 + 216616719 216616925 MER30 238 + 0 238 63231 15 0 18 70 8 0 13 7 29 93 chain 18130 chr2 242193529 + 216655249 216655617 THE1D 372 + 11 372 58533 45 43 35 10 4 5 60 30 34 25 1 0 9 20 16 26 0 1 95 chain 406393 chr2 242193529 + 216746516 216752003 L1PB1 5432 + 19 5417 5066 69 2 0 99 11 14 338 15 0 55 2 0 17 0 1 5 14 13 94 4 5 666 1 0 7 2 0 5 54 42 147 0 6 651 1 0 416 0 1 67 0 1 96 6 0 101 47 9 70 0 3 379 1 7 176 3 6 133 3 4 225 5 6 215 0 1 457 4 0 477 1 0 11 1 0 20 1 0 13 16 11 9 2 0 53 2 1 10 7 6 30 0 1 13 1 0 15 3 0 7 14 5 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 9 1 0 4 chain 5545 chr2 242193529 + 216778508 216778574 MER41A 554 + 399 466 83053 31 0 1 35 chain 3639 chr2 242193529 + 216885798 216885840 LTR12C 1709 + 795 837 94110 42 chain 21060 chr2 242193529 + 216959950 216960219 AluSc 308 + 0 265 55046 11 3 0 246 1 0 8 chain 5876 chr2 242193529 + 217110335 217110410 MER53 195 + 1 76 81573 75 chain 21492 chr2 242193529 + 217211078 217211413 MER4D0 881 + 558 881 54518 5 1 0 73 65 54 191 chain 17641 chr2 242193529 + 217213020 217213257 AluSp 311 + 70 308 59078 95 1 3 97 13 12 31 chain 3242 chr2 242193529 + 217222662 217222742 MADE1 96 - 0 96 97557 20 28 44 32 chain 3994 chr2 242193529 + 217244547 217244593 MER53 195 + 149 195 91485 46 chain 52660 chr2 242193529 + 217311223 217311785 L1HS 6032 + 5468 6030 28682 562 chain 2539 chr2 242193529 + 217313118 217313173 MamRep1894 122 + 2 57 103454 20 6 11 7 5 0 17 chain 144001 chr2 242193529 + 217378024 217379708 L1PA5 6144 + 4461 6143 12771 167 1 0 336 0 1 1017 1 6 6 1 0 6 5 0 102 0 1 29 3 1 10 chain 4690 chr2 242193529 + 217432296 217432377 MADE1 96 - 0 96 87326 22 1 0 15 6 22 37 chain 9085 chr2 242193529 + 217485823 217486088 Tigger3d 321 + 67 236 72372 73 8 9 41 91 20 13 26 0 13 chain 32644 chr2 242193529 + 217496737 217497188 L1PA8 5853 + 5410 5853 39813 154 1 0 44 6 4 70 1 0 5 2 1 52 6 5 15 1 0 67 2 1 25 chain 4708 chr2 242193529 + 217523084 217523138 MER5A1 166 + 39 93 87208 54 chain 19982 chr2 242193529 + 217524542 217524790 L1PA8 5853 + 5608 5853 56407 71 1 0 61 2 1 19 2 1 92 chain 76507 chr2 242193529 + 217560970 217562069 MER11A 1151 + 0 1151 22435 79 0 8 109 1 0 34 1 0 64 38 20 10 5 3 345 43 47 24 0 4 69 0 2 16 1 59 93 13 12 89 1 0 64 chain 13855 chr2 242193529 + 217562073 217562250 MER4D1 891 + 718 889 63790 87 6 0 84 chain 42802 chr2 242193529 + 217677896 217678376 L1PA3long 6157 + 5677 6157 32887 147 1 0 183 0 1 149 chain 27958 chr2 242193529 + 217681435 217681738 AluYa5 310 + 0 300 44932 132 3 0 168 chain 4714 chr2 242193529 + 217757109 217757162 MER53 195 + 9 62 87178 53 chain 3044 chr2 242193529 + 217769019 217769053 L1ME1 1623 + 1142 1176 99382 34 chain 18804 chr2 242193529 + 217888498 217888860 THE1B 368 + 0 368 57773 106 131 137 125 chain 7022 chr2 242193529 + 217985055 217985184 MER30 238 + 88 235 77517 12 0 21 31 7 7 39 14 11 26 chain 4244 chr2 242193529 + 218025947 218026051 LTR16B2 458 + 294 404 89858 24 17 19 22 16 20 25 chain 82488 chr2 242193529 + 218095539 218096528 LTR5B 1012 + 0 1012 21126 123 0 14 352 1 0 147 0 10 366 chain 45223 chr2 242193529 + 218112255 218112766 MER9a3 513 + 0 513 31468 454 0 2 57 chain 235049 chr2 242193529 + 218113573 218116493 HERVK9-int 4720 + 54 4720 8600 4 1 0 66 1 0 7 51 49 135 0 6 607 4 5 121 0 4 120 0 185 133 0 924 87 0 1 143 13 652 4 1 0 315 9 0 241 0 1 526 2 1 329 chain 43241 chr2 242193529 + 218116493 218117006 MER9a3 513 + 0 513 32619 12 6 1 74 0 4 45 0 1 376 chain 44144 chr2 242193529 + 218144565 218145075 MER9a2 513 + 0 513 32051 196 0 1 257 0 2 57 chain 4336 chr2 242193529 + 218173369 218173425 MER45C 884 + 92 148 89261 56 chain 61623 chr2 242193529 + 218213328 218214009 L1PA3long 6157 + 5474 6157 25957 223 0 2 458 chain 3398 chr2 242193529 + 218245825 218245862 tRNA-Tyr-TAT 37 + 0 37 96097 37 chain 24006 chr2 242193529 + 218251946 218252233 AluSp 311 + 8 292 50783 76 3 0 208 chain 84188 chr2 242193529 + 218354573 218355539 LTR13A 966 + 0 964 20768 660 3 1 303 chain 124645 chr2 242193529 + 218515149 218516705 L1PA8 5853 + 4303 5853 14755 60 11 5 586 1 8 42 3 0 5 1 3 70 1 3 35 0 1 350 3 0 93 1 0 44 2 0 69 3 2 9 1 0 52 2 1 19 2 1 54 1 0 12 0 2 24 chain 5086 chr2 242193529 + 218586811 218586877 MLT1A 405 + 323 389 85216 12 1 0 26 0 1 27 chain 5884 chr2 242193529 + 218619800 218619870 U3 216 + 0 70 81541 70 chain 37904 chr2 242193529 + 218799127 218799624 LTR21A 479 + 0 468 36136 56 4 1 7 1 0 193 22 0 132 2 0 10 7 6 63 chain 16701 chr2 242193529 + 218802138 218802331 LTR10F 562 + 318 512 60149 151 0 1 42 chain 25141 chr2 242193529 + 218843470 218843770 AluSp 311 + 6 311 49053 143 1 6 156 chain 127770 chr2 242193529 + 218845938 218847348 SVA_F 1814 + 10 1565 14313 876 2 5 23 1 2 23 0 1 7 0 142 81 1 0 14 1 0 381 chain 163407 chr2 242193529 + 218930764 218932600 SVA_D 2077 + 0 2062 11520 724 0 3 29 0 37 99 0 83 61 0 2 52 0 3 11 6 6 87 0 1 149 0 97 618 chain 29182 chr2 242193529 + 219044332 219044669 L1PA6 6164 + 5822 6160 43077 193 0 1 144 chain 25937 chr2 242193529 + 219102732 219103031 AluYa5 310 + 11 308 47809 53 2 0 244 chain 94941 chr2 242193529 + 219312637 219314005 LTR12C 1709 + 0 1709 18917 336 0 43 85 0 4 6 3 0 176 0 278 158 0 47 75 27 20 9 24 0 24 0 1 20 19 20 17 56 58 244 12 11 77 chain 6650 chr2 242193529 + 219589596 219589675 MER30 238 + 158 234 78811 41 3 0 35 chain 21299 chr2 242193529 + 219647053 219647420 MSTA 426 + 0 399 54769 92 15 37 12 4 7 86 34 32 34 13 22 77 chain 40560 chr2 242193529 + 219651699 219652189 MER9a1 513 + 0 513 34257 228 16 39 246 chain 24333 chr2 242193529 + 219683469 219683846 THE1B 368 + 0 368 50279 13 2 0 26 1 6 127 9 8 12 4 0 14 4 7 80 1 0 9 9 0 66 chain 23667 chr2 242193529 + 219700709 219700986 AluY 311 + 0 294 51331 54 0 17 223 chain 41818 chr2 242193529 + 219876118 219876657 MER41A 554 + 15 554 33474 72 10 11 332 0 1 33 4 0 51 0 2 37 chain 10436 chr2 242193529 + 219879082 219879212 MER41B 635 + 503 633 69547 130 chain 553990 chr2 242193529 + 219931818 219937838 L1PA2 6032 + 0 6027 482 2015 0 1 509 0 1 133 0 4 113 0 1 3092 0 7 15 8 1 135 chain 27790 chr2 242193529 + 219953085 219953434 THE1B 368 + 7 368 45194 37 0 15 109 3 0 200 chain 25140 chr2 242193529 + 220015809 220018167 THE1C 375 + 0 375 49057 125 3 0 58 1 2 5 1 0 57 2 3 69 1980 0 31 1 0 25 chain 31726 chr2 242193529 + 220055235 220055600 THE1A-int 1579 + 1214 1579 40556 365 chain 22789 chr2 242193529 + 220055600 220055934 THE1A 353 + 0 333 52688 13 3 1 34 0 1 45 1 0 15 26 27 197 chain 25282 chr2 242193529 + 220089379 220089758 MLT2A1 477 + 0 385 48813 84 1 0 4 0 1 28 1 0 4 5 6 13 0 1 18 10 14 92 6 7 113 chain 15814 chr2 242193529 + 220136021 220136363 Tigger4b 360 + 0 360 61267 20 9 10 78 16 37 20 36 34 78 25 30 9 7 0 44 chain 58540 chr2 242193529 + 220189642 220190319 L1PA7 6471 + 5791 6466 26806 668 2 0 7 chain 14706 chr2 242193529 + 220194347 220194715 MSTA 426 + 0 408 62671 61 14 12 35 5 29 62 0 1 5 130 147 56 chain 24941 chr2 242193529 + 220203035 220203415 THE1B 368 + 0 368 49366 82 15 1 86 1 0 30 0 1 15 27 29 124 chain 9332 chr2 242193529 + 220249560 220249765 MSTB 430 + 164 374 71850 20 0 2 13 8 15 28 63 59 73 chain 17138 chr2 242193529 + 220253740 220254109 L1PB1 5432 + 5085 5424 59656 18 7 6 5 1 0 20 1 0 12 1 0 10 9 5 6 2 0 53 2 1 16 1 0 44 1 0 7 32 20 19 3 0 12 11 9 22 1 0 20 0 3 11 1 0 16 1 0 4 chain 12953 chr2 242193529 + 220276414 220276575 LTR7Y 441 + 241 401 65174 24 1 0 136 chain 84961 chr2 242193529 + 220360516 220361493 L1PA5 6144 + 5168 6144 20628 819 2 0 5 1 3 52 1 0 97 chain 4476 chr2 242193529 + 220477039 220477090 MADE1 96 + 45 96 88459 51 chain 28146 chr2 242193529 + 220561236 220561583 L1PA6 6164 + 5812 6161 44640 103 7 9 237 chain 43396 chr2 242193529 + 220594022 220594579 MLT2A2 560 + 0 560 32513 13 0 6 145 10 7 389 chain 16861 chr2 242193529 + 220711345 220711691 THE1B 368 + 0 356 59960 41 51 52 79 2 1 19 50 60 104 chain 3951 chr2 242193529 + 220719930 220719995 MADE1 96 + 3 83 91755 26 6 21 33 chain 6776 chr2 242193529 + 220748882 220748965 L1P3b 214 + 44 127 78394 83 chain 3395 chr2 242193529 + 220782154 220782193 MER54B 801 + 2 41 96122 39 chain 224752 chr2 242193529 + 220828019 220830666 L1PA7 6471 + 3784 6461 8899 52 0 1 496 1 0 331 1 8 281 1 2 378 1 0 286 1 4 87 1 0 426 0 1 157 8 29 87 1 0 51 chain 10763 chr2 242193529 + 220865180 220865322 L1PA8 5853 + 5713 5853 68933 27 2 1 19 1 0 93 chain 10616 chr2 242193529 + 220868639 220869215 MER75 514 + 278 478 69196 26 19 37 17 18 0 30 1 2 46 377 0 42 chain 29083 chr2 242193529 + 220874876 220875183 AluYk12 309 + 0 307 43214 307 chain 4353 chr2 242193529 + 220888929 220888981 MLT2C2 476 + 424 476 89158 52 chain 6135 chr2 242193529 + 220971770 220971858 MLT1D 503 + 0 86 80580 21 1 0 60 1 0 5 chain 4119 chr2 242193529 + 221052777 221052888 MLT1H1 527 + 11 123 90659 13 1 0 4 0 1 5 37 39 26 1 0 24 chain 32456 chr2 242193529 + 221091488 221091850 L1PA5 6144 + 5768 6130 39982 362 chain 4237 chr2 242193529 + 221134801 221135137 MLT1J1 437 + 43 371 89906 48 265 257 23 chain 9074 chr2 242193529 + 221135789 221135914 MER85 139 + 2 138 72394 90 4 15 31 chain 22258 chr2 242193529 + 221165787 221166093 THE1C 375 + 61 364 53468 59 3 0 61 0 1 8 9 8 43 1 2 107 1 0 14 chain 49083 chr2 242193529 + 221190400 221190971 L1PA5 6144 + 5580 6144 29914 410 7 0 154 chain 18817 chr2 242193529 + 221242498 221242734 L1PA5 6144 + 5907 6144 57756 74 8 9 154 chain 12868 chr2 242193529 + 221256904 221257130 L1MA6 2487 + 1238 1467 65311 9 0 1 104 52 54 61 chain 60549 chr2 242193529 + 221257136 221257828 L1PA5 6144 + 5446 6139 26218 543 0 1 149 chain 3748 chr2 242193529 + 221263262 221263383 MER63B 433 + 309 423 93264 42 64 57 15 chain 30386 chr2 242193529 + 221327247 221327677 L1PA8 5853 + 5419 5853 41688 126 0 1 18 1 0 46 2 0 67 1 0 11 9 8 24 0 2 7 5 12 18 2 1 93 chain 28547 chr2 242193529 + 221511213 221511669 MER57A1 433 + 0 421 44044 279 43 5 16 22 24 38 9 10 49 chain 7140 chr2 242193529 + 221602072 221602154 L1PA8 5853 + 5771 5853 77129 82 chain 16852 chr2 242193529 + 221652689 221653009 THE1B 368 + 0 348 59971 17 0 2 49 0 14 90 1 0 19 58 72 43 24 23 19 chain 51763 chr2 242193529 + 221751504 221752145 L1PA8A 6298 + 5657 6290 28949 379 0 1 77 9 0 176 chain 77023 chr2 242193529 + 221870649 221871747 L1PA10 4194 + 1350 2452 22309 103 7 8 163 4 1 32 20 19 44 7 9 30 2 0 6 0 2 160 0 1 4 1 0 72 16 13 5 0 3 130 0 4 90 0 1 202 chain 5810 chr2 242193529 + 221875253 221875321 MER1B 344 + 276 344 81877 68 chain 130204 chr2 242193529 + 221891491 221893047 SVA_D 2077 + 4 2077 14014 100 0 27 430 4 40 124 0 3 30 10 6 79 37 0 60 0 86 26 1 53 18 2 355 47 0 1 588 chain 9551 chr2 242193529 + 221932060 221932200 L1PA8 5853 + 5715 5853 71368 25 2 1 14 6 5 93 chain 16745 chr2 242193529 + 221941057 221941384 MLT2D 439 + 0 291 60105 95 1 0 94 100 65 37 chain 556410 chr2 242193529 + 221984565 221990586 L1PA2 6032 + 3 6028 338 182 0 1 935 1 0 4061 0 4 842 chain 163093 chr2 242193529 + 222001591 222003402 L1PA4 6152 + 4327 6143 11542 973 0 5 838 chain 9235 chr2 242193529 + 222023311 222023435 MER85 139 + 5 139 72043 81 5 15 38 chain 175685 chr2 242193529 + 222147207 222149204 L1PA5 6144 + 4147 6141 10793 1814 0 1 105 0 2 5 2 0 61 4 0 6 chain 3493 chr2 242193529 + 222167297 222167342 L1MC5 759 + 631 676 95290 45 chain 24652 chr2 242193529 + 222171168 222171536 THE1C 375 + 0 375 49790 168 2 0 25 8 9 92 34 43 13 1 0 25 chain 5730 chr2 242193529 + 222182209 222182411 MER8 282 + 0 282 82219 65 14 58 13 93 129 17 chain 28157 chr2 242193529 + 222230242 222230562 L1PA7 6471 + 6140 6459 44621 260 1 0 59 chain 8444 chr2 242193529 + 222277970 222278085 MER30 238 + 125 235 73808 30 2 0 37 3 0 43 chain 12161 chr2 242193529 + 222323585 222323747 Tigger4b 360 + 175 351 66547 65 0 5 51 0 9 46 chain 15443 chr2 242193529 + 222342737 222342942 Tigger2a 444 + 170 375 61731 86 1 6 5 5 0 108 chain 16360 chr2 242193529 + 222406731 222407089 THE1B 368 + 0 368 60562 15 1 0 14 0 5 61 26 28 51 64 70 62 25 23 39 chain 198161 chr2 242193529 + 222413564 222416190 MER4-int 2692 + 74 2691 9767 25 2 0 8 1 0 18 0 2 166 0 1 214 0 2 248 3 10 71 0 1 78 0 1 18 1 2 424 0 40 74 16 16 19 5 0 32 1 0 48 48 0 183 3 4 83 1 0 28 0 2 57 15 0 327 3 0 8 2 4 97 0 3 104 0 4 195 chain 36569 chr2 242193529 + 222469814 222470281 L1PA8 5853 + 5395 5853 37029 4 1 0 165 1 0 46 2 0 72 1 0 6 3 1 51 2 1 19 1 0 93 chain 10413 chr2 242193529 + 222479722 222479851 MER85 139 + 0 139 69585 99 0 10 30 chain 5371 chr2 242193529 + 222498297 222498369 U6 107 + 7 78 83840 23 1 0 48 chain 29079 chr2 242193529 + 222526629 222526970 L1PA8A 6298 + 5941 6289 43222 86 0 5 169 0 1 14 0 1 72 chain 5819 chr2 242193529 + 222583499 222583592 L1MC4 1079 + 735 828 81830 32 1 0 29 1 3 25 1 0 4 chain 522353 chr2 242193529 + 222584377 222590524 L1PA5 6144 + 2 6144 2164 110 16 30 810 25 0 217 9 0 73 0 3 127 0 7 228 0 1 95 1 0 23 0 4 464 0 2 164 0 2 872 0 1 38 7 6 403 2 0 495 2 3 540 3 1 662 1 0 613 0 1 26 1 0 102 1 0 5 1 3 11 chain 22703 chr2 242193529 + 222616305 222616567 AluSc 308 + 39 301 52822 262 chain 23191 chr2 242193529 + 222618868 222619155 AluYa5 310 + 14 295 52094 38 7 3 9 2 0 231 chain 25864 chr2 242193529 + 222769436 222769849 LTR43 600 + 174 593 47919 11 5 1 30 13 7 132 23 35 36 1 2 18 2 0 20 2 7 120 chain 4063 chr2 242193529 + 222779330 222779381 MADE1 96 + 1 69 90998 35 0 17 16 chain 129933 chr2 242193529 + 222815718 222817363 SVA_F 1814 + 9 1565 14048 44 5 129 174 0 1 531 1 0 60 224 14 215 2 0 10 1 0 378 chain 1900 chr2 242193529 + 222816533 222816563 SVA_F 1814 + 1188 1219 66227 26 0 1 4 chain 12377 chr2 242193529 + 222816581 222816755 SVA_F 1814 + 962 1185 51752 27 8 57 139 chain 27420 chr2 242193529 + 222961713 222962062 THE1A 353 + 0 353 45679 110 1 0 92 1 0 25 2 8 118 chain 128196 chr2 242193529 + 222962062 222963595 THE1A-int 1579 + 0 1579 14253 444 0 12 312 0 32 29 0 1 218 0 1 530 chain 481300 chr2 242193529 + 223012587 223018014 L1PA5 6144 + 707 6144 3600 230 0 1 71 0 1 334 0 1 1831 1 0 1165 0 4 946 0 4 849 chain 32133 chr2 242193529 + 223039346 223039690 L1HS 6032 + 5688 6032 40240 344 chain 6659 chr2 242193529 + 223058782 223058902 L1PB1 5432 + 5308 5420 78778 19 24 19 24 1 0 21 1 0 13 1 0 16 chain 13189 chr2 242193529 + 223075755 223075929 MSTA 426 + 232 426 64797 64 1 21 109 chain 97763 chr2 242193529 + 223134589 223135666 L1PA4 6152 + 5060 6136 18552 831 2 1 244 chain 38722 chr2 242193529 + 223169341 223169783 L1PA5 6144 + 5689 6132 35549 121 0 1 321 chain 78062 chr2 242193529 + 223190520 223191443 LTR5_Hs 974 + 0 974 22085 47 0 3 25 0 41 703 8 15 140 chain 104738 chr2 242193529 + 223197854 223199090 L1PA7 6471 + 5234 6470 17725 268 0 1 121 0 1 5 2 4 674 11 8 108 1 2 39 2 0 5 chain 37086 chr2 242193529 + 223203417 223203870 LTR2 463 + 0 458 36689 61 0 3 205 0 1 92 12 13 83 chain 13665 chr2 242193529 + 223209161 223209355 L1PA5 6144 + 5945 6144 64064 44 1 8 9 7 0 121 1 6 11 chain 8870 chr2 242193529 + 223222086 223222197 MER30 238 + 127 238 72833 111 chain 409941 chr2 242193529 + 223296472 223302392 HERVL-int 5654 + 0 5654 5024 47 18 11 418 12 13 186 0 1 229 2 4 119 1 0 186 1 0 500 1 0 49 9 0 112 0 3 36 0 1 120 4 8 41 13 11 97 28 35 396 0 1 372 5 7 1024 6 13 34 0 1 5 0 1 69 13 14 392 24 39 13 8 9 198 0 1 402 15 16 38 1 4 36 46 53 59 315 7 73 76 79 71 chain 139238 chr2 242193529 + 223322026 223323581 L1PA4 6152 + 4408 5968 13166 537 1 0 359 0 5 508 1 2 149 chain 514560 chr2 242193529 + 223330514 223336653 L1PA6 6164 + 0 6155 2542 165 30 31 4 1 0 589 1 18 560 1 2 965 1 0 666 2 0 396 1 0 260 4 0 275 2 1 4 0 1 217 0 1 32 0 1 139 0 1 4 1 0 375 0 1 251 1 0 324 0 1 567 0 1 162 1 2 91 9 10 38 chain 79663 chr2 242193529 + 223344811 223345734 L1PA5 6144 + 5208 6134 21702 414 9 9 181 0 2 182 0 1 137 chain 27326 chr2 242193529 + 223372492 223372866 THE1C 375 + 0 375 45791 125 3 0 43 0 1 15 2 3 16 14 17 130 1 0 25 chain 22844 chr2 242193529 + 223405252 223405600 THE1D 372 + 2 332 52598 74 46 27 77 0 1 7 3 1 102 0 2 39 chain 50042 chr2 242193529 + 223405600 223406187 L1PA6 6164 + 5417 6004 29549 587 chain 13460 chr2 242193529 + 223406188 223406338 L1PA6 6164 + 6006 6156 64373 150 chain 22524 chr2 242193529 + 223462065 223462355 MSTA-int 1630 + 0 286 53087 75 5 1 210 chain 23970 chr2 242193529 + 223462364 223462788 LTR7C 471 + 0 456 50837 71 12 30 43 0 13 64 1 0 119 78 79 21 0 1 15 chain 22051 chr2 242193529 + 223481193 223481488 THE1B 368 + 0 310 53765 174 1 0 27 0 1 12 9 26 63 2 0 7 chain 67386 chr2 242193529 + 223482228 223482977 L1PA5 6144 + 5395 6144 24601 749 chain 19921 chr2 242193529 + 223496461 223496784 THE1D 372 + 48 372 56492 26 3 0 6 5 9 77 6 10 15 19 17 17 1 0 6 1 0 141 chain 26102 chr2 242193529 + 223504276 223504576 L1PA6 6164 + 5859 6159 47569 300 chain 2655 chr2 242193529 + 223534940 223534984 MADE1 96 + 1 46 102690 29 4 5 11 chain 21500 chr2 242193529 + 223608396 223608620 AluYb8 318 + 85 309 54512 224 chain 30651 chr2 242193529 + 223648409 223648756 L1PA4 6152 + 5796 6143 41420 347 chain 309423 chr2 242193529 + 223658753 223663811 L1PB1 5432 + 815 5411 6625 88 4 6 424 9 11 35 33 33 186 0 1 117 0 27 750 3 0 69 712 268 174 20 25 28 6 5 96 7 6 42 0 11 82 0 1 301 22 23 785 0 2 121 1 2 92 3 0 136 5 1 25 6 14 292 56 20 24 39 30 52 2 1 10 6 5 39 7 6 15 2 0 6 15 6 18 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 7 chain 28747 chr2 242193529 + 223671561 223671915 THE1A 353 + 0 353 43711 110 1 0 243 chain 5547 chr2 242193529 + 223686442 223686525 MER2 342 + 159 246 83047 59 6 10 18 chain 61013 chr2 242193529 + 223766462 223767181 L1PA7 6471 + 5718 6459 26101 27 1 0 223 0 1 353 1 23 114 chain 160475 chr2 242193529 + 223790801 223793155 L1PA11 4918 + 2300 4578 11721 83 0 1 114 40 32 136 0 1 48 19 12 304 0 1 164 1 2 153 19 20 91 0 32 81 0 1 181 0 6 21 45 0 47 0 1 83 43 4 94 0 1 37 0 1 52 8 10 76 1 3 136 2 0 5 9 1 6 0 2 50 2 1 12 1 0 66 2 0 16 1 0 10 53 41 15 1 0 14 2 0 10 chain 5879 chr2 242193529 + 223828771 223829188 MER45A 178 + 68 178 81559 37 333 26 47 chain 3401 chr2 242193529 + 223829947 223829991 MER58A 224 + 165 207 96060 37 2 0 5 chain 120677 chr2 242193529 + 223849682 223851212 THE1B-int 1605 + 0 1587 15411 129 0 35 150 4 6 40 8 7 63 0 25 43 5 0 190 11 12 887 chain 18440 chr2 242193529 + 223851229 223851599 THE1B 368 + 0 368 58184 108 118 118 4 1 0 10 1 0 128 chain 40232 chr2 242193529 + 223872827 223873291 L1PA7 6471 + 5995 6459 34495 464 chain 5438 chr2 242193529 + 223958664 223958726 MER2 342 + 184 246 83510 62 chain 9340 chr2 242193529 + 224016020 224016207 L1MD2 1676 + 934 1118 71836 40 3 0 25 34 39 29 3 0 3 1 0 43 1 0 5 chain 14937 chr2 242193529 + 224036429 224036647 L1PA7 6471 + 6258 6469 62338 49 3 1 11 7 3 36 0 4 93 3 0 9 2 0 5 chain 23829 chr2 242193529 + 224076092 224076506 MSTA 426 + 0 426 51054 21 12 13 113 4 9 48 9 8 33 9 12 11 0 1 47 33 36 74 chain 31566 chr2 242193529 + 224098835 224099284 MER75 514 + 39 488 40689 45 47 46 5 0 1 5 0 1 44 1 0 302 chain 47419 chr2 242193529 + 224129873 224130419 L1PA6 6164 + 5613 6156 30497 308 1 0 131 2 0 104 chain 47623 chr2 242193529 + 224198863 224199452 LTR10C 591 + 0 591 30428 45 1 0 465 0 1 4 0 1 4 9 10 61 chain 3106 chr2 242193529 + 224200595 224200643 MER45A 178 + 131 178 98745 21 2 1 25 chain 11216 chr2 242193529 + 224219443 224219603 MER61A 341 + 0 162 68223 21 1 0 35 8 11 95 chain 28473 chr2 242193529 + 224225330 224225728 LTR7 482 + 0 482 44167 54 23 61 109 0 1 39 0 31 16 0 13 41 1 2 115 chain 295494 chr2 242193529 + 224225730 224229328 HERVH-int 3825 + 0 3825 6962 336 1 0 194 1 0 11 1 0 4 0 1 26 1 0 8 1 0 7 29 17 7 0 38 35 2 0 13 1 0 22 21 0 59 0 1 447 15 0 290 3 0 169 4 31 290 0 4 290 1 2 753 24 26 39 8 218 15 6 0 5 3 9 231 0 2 225 chain 25428 chr2 242193529 + 224230586 224230974 LTR7 482 + 0 470 48586 54 23 61 109 0 1 25 0 30 35 1 11 39 1 2 52 12 14 37 chain 5879 chr2 242193529 + 224239471 224239551 MADE1 96 + 0 96 81554 28 1 17 51 chain 10629 chr2 242193529 + 224255203 224255396 Ricksha 1077 + 53 232 69175 29 3 1 11 18 13 12 3 0 3 1 0 26 4 1 83 chain 19544 chr2 242193529 + 224265361 224265596 L1PA6 6164 + 5854 6088 56963 57 1 0 177 chain 28812 chr2 242193529 + 224296632 224297043 LTR7 482 + 0 482 43608 68 9 47 109 0 1 14 32 64 179 chain 294091 chr2 242193529 + 224297045 224300708 HERVH-int 3825 + 0 3825 7008 95 1 2 433 1 0 11 1 0 4 0 1 23 27 0 8 19 72 29 88 0 5 2 0 14 1 0 14 21 0 67 1 0 120 0 1 616 4 1 169 4 31 290 0 4 293 0 1 169 1 6 591 9 11 39 8 218 260 0 2 225 chain 24689 chr2 242193529 + 224301952 224302354 LTR7 482 + 0 473 49753 69 29 17 15 15 14 17 2 53 39 0 1 14 1 32 18 5 6 178 chain 4716 chr2 242193529 + 224319446 224319504 MER45C 884 + 71 129 87166 58 chain 48796 chr2 242193529 + 224375838 224376492 Tigger1 2417 + 1713 2403 30014 326 8 6 166 0 3 37 1 0 5 3 0 81 8 25 11 0 22 8 chain 43501 chr2 242193529 + 224377194 224377746 MLT2A2 560 + 0 560 32457 295 0 1 103 3 14 103 5 1 43 chain 32776 chr2 242193529 + 224397446 224397853 THE1B-int 1605 + 0 410 39689 25 3 0 5 3 6 77 0 3 294 chain 3066 chr2 242193529 + 224408960 224408993 L1MA4 2864 + 2773 2806 99128 33 chain 25360 chr2 242193529 + 224425606 224425966 THE1B 368 + 0 368 48686 44 0 15 42 4 2 69 3 2 22 8 0 110 0 4 58 chain 26941 chr2 242193529 + 224434803 224435180 MER51B 395 + 0 395 46353 6 0 3 33 12 0 203 1 0 5 6 7 87 0 27 24 chain 319272 chr2 242193529 + 224484836 224488949 L1P3 4156 + 1 4139 6422 241 37 51 28 1 0 206 4 0 171 3 16 132 13 14 62 1 6 8 5 0 57 1 0 6 1 2 248 1 0 279 11 8 513 0 4 86 3 0 318 0 1 160 25 12 39 0 26 111 13 12 106 1 0 19 0 10 486 0 3 15 21 1 17 1 0 4 20 15 43 0 1 9 1 0 24 1 6 229 0 4 297 2 0 7 2 1 24 chain 32319 chr2 242193529 + 224490164 224490589 LTR13 1007 + 541 977 40103 87 2 1 58 1 0 7 6 7 131 0 4 24 0 1 47 0 5 54 0 1 4 0 1 4 chain 104966 chr2 242193529 + 224621805 224622983 L1PA5 6144 + 4946 6132 17691 173 0 1 177 0 4 320 0 1 54 0 1 319 0 1 135 chain 24146 chr2 242193529 + 224659781 224660163 MER51B 395 + 0 395 50582 89 0 56 28 55 11 61 1 0 5 0 1 93 0 1 50 chain 21763 chr2 242193529 + 224692070 224692538 L1PB1 5432 + 5033 5422 54151 70 59 11 20 1 0 13 1 0 9 17 11 53 2 1 15 1 0 43 2 1 16 25 12 19 7 4 15 2 0 45 1 0 13 1 0 18 chain 26705 chr2 242193529 + 224699656 224700028 THE1D 372 + 0 360 46677 76 26 7 106 0 5 131 4 6 29 chain 70123 chr2 242193529 + 224757465 224758384 THE1B-int 1605 + 0 947 23970 25 3 0 5 1 4 398 0 25 122 8 9 116 24 26 217 chain 39307 chr2 242193529 + 224777238 224777787 MLT2A2 560 + 0 559 35142 168 13 12 26 19 20 172 5 15 146 chain 29181 chr2 242193529 + 224869988 224870362 THE1C 375 + 0 375 43081 328 0 2 18 2 1 26 chain 21877 chr2 242193529 + 224976126 224976400 L1PA8 5853 + 5585 5853 54006 25 2 0 69 1 0 10 1 0 51 2 1 19 1 0 93 chain 9147 chr2 242193529 + 225061568 225061680 MER85 139 + 0 122 72241 89 0 10 23 chain 29944 chr2 242193529 + 225101765 225102114 L1PA6 6164 + 5812 6161 42107 349 chain 165974 chr2 242193529 + 225127766 225129760 L1PA8A 6298 + 2924 4921 11335 191 2 1 165 0 1 71 3 2 32 3 4 4 1 0 23 0 4 58 0 1 399 0 1 266 0 2 268 1 2 400 5 0 102 chain 85958 chr2 242193529 + 225135247 225136198 L1PA4 6152 + 5194 6146 20450 623 0 1 328 chain 28412 chr2 242193529 + 225301581 225301947 THE1B 368 + 0 368 44251 15 2 0 22 0 5 126 1 0 32 2 0 62 0 1 36 0 1 68 chain 13020 chr2 242193529 + 225303656 225303839 THE1B-int 1605 + 1416 1599 65089 58 6 7 67 4 3 48 chain 83804 chr2 242193529 + 225323390 225324312 L1PA3long 6157 + 5234 6156 20846 922 chain 38482 chr2 242193529 + 225388059 225388591 L1PA8 5853 + 5327 5853 35728 237 1 0 46 2 0 72 8 6 11 1 2 27 18 17 15 5 4 89 chain 84817 chr2 242193529 + 225468987 225470009 L1PA7 6471 + 5430 6466 20656 184 0 3 239 0 9 12 0 4 129 0 1 434 12 9 12 chain 8205 chr2 242193529 + 225517847 225518104 L1MA8 2339 + 1652 1924 74401 17 60 73 46 67 69 67 chain 311575 chr2 242193529 + 225712805 225716279 L1PA4 6152 + 2673 6151 6582 795 1 0 472 0 1 1711 0 1 210 0 3 285 chain 118609 chr2 242193529 + 225743946 225745379 LTR12C 1709 + 0 1709 15791 282 4 0 368 0 278 184 1 0 4 4 2 6 0 2 98 0 4 159 1 0 73 5 7 91 1 0 69 1 0 82 chain 67839 chr2 242193529 + 225747553 225748289 L1PA3long 6157 + 5422 6157 24487 531 1 0 204 chain 33921 chr2 242193529 + 225761668 225762124 MLT2A2 560 + 0 484 38769 169 13 29 55 4 5 144 0 11 71 chain 445305 chr2 242193529 + 225824967 225830731 L1PA8 5853 + 108 5853 4465 189 23 11 351 25 7 115 1 4 86 0 1 672 0 2 324 1 2 85 0 2 58 4 1 446 1 0 4 4 5 409 1 0 24 3 2 313 1 0 40 2 1 996 0 15 26 0 12 56 1 2 128 1 3 138 0 2 369 2 0 73 0 2 266 26 10 204 1 0 44 2 0 71 1 0 9 1 0 52 2 1 19 1 0 93 chain 20308 chr2 242193529 + 225834077 225834299 L1PA2 6032 + 5805 6027 56007 222 chain 55210 chr2 242193529 + 225873450 225875127 L1PA2 6032 + 4343 6028 27803 676 0 7 281 0 1 720 chain 103087 chr2 242193529 + 225952261 225953429 L1PA5 6144 + 4703 5874 17942 689 0 3 479 chain 38427 chr2 242193529 + 226012743 226013366 L1PB2 3958 + 3220 3837 35772 60 0 4 13 16 14 49 2 1 13 10 0 65 2 0 14 1 0 4 3 0 82 1 0 79 1 0 14 7 8 35 2 0 4 1 0 13 1 0 52 11 9 22 0 16 46 chain 3672 chr2 242193529 + 226063119 226063169 L1MC2 1988 + 1940 1988 93795 8 1 0 34 1 0 6 chain 3446 chr2 242193529 + 226104887 226104927 MLT2A2 560 + 520 560 95691 40 chain 468436 chr2 242193529 + 226107276 226112616 L1PA4 6152 + 1 5354 3893 144 0 22 120 0 1 442 1 2 752 4 2 20 0 1 83 3 0 439 0 1 799 15 7 2518 chain 42646 chr2 242193529 + 226241000 226241509 MLT2A2 560 + 50 560 32971 500 0 1 9 chain 277568 chr2 242193529 + 226252834 226256215 L1PA6 6164 + 2757 6162 7501 426 1 0 6 0 1 33 0 1 99 0 6 192 0 1 181 2 0 248 1 2 75 0 4 183 0 2 86 11 0 60 0 1 71 0 1 243 13 12 17 0 4 71 0 1 523 0 4 170 3 19 331 0 1 254 0 1 69 6 0 6 chain 11481 chr2 242193529 + 226290208 226290449 L1PB1 5432 + 5190 5414 67772 30 2 1 15 1 0 45 1 0 9 31 21 12 14 11 12 2 0 24 1 0 20 0 3 11 1 0 10 chain 74563 chr2 242193529 + 226290954 226292002 MER11A 1151 + 0 1147 22942 55 0 99 140 4 0 19 0 1 129 0 1 94 0 7 138 6 7 145 25 1 26 16 21 37 0 1 20 8 19 21 14 15 151 chain 7081 chr2 242193529 + 226332014 226332125 L1PB1 5432 + 5193 5300 77321 26 3 2 16 1 0 44 1 0 15 1 0 4 chain 7162 chr2 242193529 + 226341047 226341165 Ricksha_0 1343 + 1161 1281 77067 25 1 0 57 0 2 8 11 12 16 chain 3212 chr2 242193529 + 226342432 226342470 L1MC 810 + 505 543 97780 38 chain 27730 chr2 242193529 + 226442145 226442551 L1PB2 3958 + 3439 3838 45279 11 4 0 21 0 3 71 1 0 73 14 13 50 2 1 71 2 0 22 1 0 63 chain 497927 chr2 242193529 + 226453629 226460213 L1PA7 6471 + 1 6470 3206 378 1 0 26 3 0 7 53 40 180 0 3 13 4 3 358 1 25 239 0 1 75 1 0 505 5 0 147 0 1 324 0 1 192 0 2 155 2 1 272 6 10 265 0 1 266 9 6 119 2 213 360 0 2 69 0 2 406 0 4 277 0 1 36 6 7 88 4 5 165 38 0 72 318 0 679 1 0 135 0 7 176 2 3 132 1 4 11 chain 45992 chr2 242193529 + 226484759 226485312 MER41A 554 + 0 554 31065 307 0 1 246 chain 11599 chr2 242193529 + 226495056 226495319 L1PB1 5432 + 5191 5424 67571 29 2 1 11 10 9 36 10 3 16 1 0 4 19 8 19 8 5 14 2 0 24 1 0 22 1 0 12 1 0 16 1 0 4 chain 98967 chr2 242193529 + 226574245 226575312 L1PA2 6032 + 4964 6031 18415 1067 chain 5518 chr2 242193529 + 226614278 226614420 L1MA9 1812 + 1485 1612 83165 11 10 0 21 1 0 18 22 21 10 3 1 15 1 0 30 chain 19323 chr2 242193529 + 226630457 226630783 THE1D 372 + 0 332 57216 61 6 16 88 22 23 9 1 0 5 16 13 29 2 0 5 0 1 82 chain 15521 chr2 242193529 + 226648485 226648776 LTR12C 1709 + 935 1192 61626 33 0 1 136 44 13 15 30 26 33 chain 67700 chr2 242193529 + 226688588 226689678 L1PB1 5432 + 4370 5411 24519 218 28 1 42 0 3 68 7 6 59 1 0 30 1 9 286 22 14 11 3 0 21 1 0 4 5 4 10 2 0 3 2 0 9 2 0 52 2 1 15 1 0 45 1 0 15 29 16 15 2 0 5 1 0 14 10 16 8 1 0 22 0 3 9 1 0 7 chain 3794 chr2 242193529 + 226762700 226762744 MADE1 96 + 1 45 92895 44 chain 10186 chr2 242193529 + 226857960 226858089 MER85 139 + 0 139 70044 99 0 10 30 chain 2470 chr2 242193529 + 226890717 226890748 L1MA3 4352 + 4258 4288 103804 25 1 0 5 chain 3181 chr2 242193529 + 226933671 226933708 MER57B1 401 + 298 335 98090 37 chain 29230 chr2 242193529 + 226946468 226946836 L1P3 4156 + 3429 3798 43003 54 0 1 58 2 6 182 4 0 68 chain 85896 chr2 242193529 + 226947639 226948580 L1PA2 6032 + 5087 6032 20468 95 0 4 846 chain 21325 chr2 242193529 + 226981102 226981371 L1PA6 6164 + 5890 6160 54727 121 5 6 143 chain 68418 chr2 242193529 + 226986471 226987341 L1PA8 5853 + 4982 5853 24352 24 1 3 207 0 1 115 0 1 93 0 2 136 1 0 45 2 0 70 1 0 60 23 22 92 chain 21090 chr2 242193529 + 227000716 227001064 THE1B 368 + 0 368 55018 44 0 15 16 1 0 17 6 4 72 1 0 30 35 45 4 0 1 87 4 2 31 chain 29291 chr2 242193529 + 227027307 227027639 L1PA5 6144 + 5814 6139 42906 176 7 0 149 chain 517750 chr2 242193529 + 227064885 227070632 L1PA3long 6157 + 10 5910 2378 142 0 1 214 2 11 394 4 132 26 1 5 265 0 1 7 1 0 193 0 9 2335 0 1 199 1 2 694 1 0 745 0 1 523 chain 214259 chr2 242193529 + 227074912 227077661 L1PA8 5853 + 3126 5853 9197 22 27 12 37 14 5 192 11 14 96 0 11 137 1 2 321 0 3 362 4 1 490 0 1 175 0 2 38 5 0 37 0 2 435 1 0 7 22 21 15 1 0 45 2 0 66 11 7 6 1 0 44 1 0 8 2 1 19 1 0 93 chain 17743 chr2 242193529 + 227101114 227101359 THE1B 368 + 121 365 58959 30 7 9 12 4 2 178 1 0 13 chain 16493 chr2 242193529 + 227149350 227149547 MER107 203 + 0 203 60388 162 0 6 35 chain 19721 chr2 242193529 + 227159512 227159836 THE1C 375 + 0 336 56760 14 2 0 33 4 5 127 0 2 5 52 63 87 chain 4491 chr2 242193529 + 227197412 227197466 Tigger3c 601 + 485 540 88386 10 0 1 44 chain 24844 chr2 242193529 + 227202463 227202747 AluYk4 311 + 1 294 49525 116 0 9 168 chain 4097 chr2 242193529 + 227232249 227232298 U5 65 + 0 49 90797 49 chain 10743 chr2 242193529 + 227321191 227321627 LTR12C 1709 + 910 1109 68966 112 238 0 23 42 43 21 chain 4467 chr2 242193529 + 227321627 227321715 LTR12C 1709 + 671 718 83103 12 41 0 35 chain 2415 chr2 242193529 + 227321647 227321680 LTR12C 1709 + 732 802 94540 26 0 37 7 chain 55539 chr2 242193529 + 227323708 227324459 MER4E1 777 + 4 773 27707 21 3 0 126 0 5 40 33 27 19 1 0 236 0 14 39 1 0 10 1 9 202 0 2 19 chain 3843 chr2 242193529 + 227335188 227335256 L1MB5 1630 + 1310 1380 92541 41 9 12 13 1 0 4 chain 5894 chr2 242193529 + 227373521 227373614 MER58A 224 + 9 119 81511 16 10 27 67 chain 28017 chr2 242193529 + 227382293 227382670 THE1C 375 + 0 375 44839 125 3 0 60 11 13 151 1 0 26 chain 7505 chr2 242193529 + 227424046 227424168 MER5A1 166 + 0 123 76120 75 19 20 28 chain 8236 chr2 242193529 + 227562857 227562953 MER85 139 + 0 96 74315 96 chain 92854 chr2 242193529 + 227678346 227679371 L1PA3long 6157 + 5132 6157 19206 1025 chain 3992 chr2 242193529 + 227716121 227716298 LTR37A 408 + 75 251 91510 25 27 28 28 72 72 5 2 0 18 chain 209811 chr2 242193529 + 227732274 227734663 L1PA5 6144 + 3739 6135 9353 605 0 4 192 0 1 895 0 3 40 1 0 656 chain 9273 chr2 242193529 + 227739318 227739724 LTR14B 630 + 0 628 71971 56 0 179 39 33 54 24 228 250 26 chain 20386 chr2 242193529 + 227752382 227752769 LTR8 732 + 0 402 55903 18 8 9 23 0 13 69 0 3 5 35 31 18 1 0 4 1 3 69 38 39 98 chain 27293 chr2 242193529 + 227784772 227785082 L1PA6 6164 + 5726 6036 45832 310 chain 7152 chr2 242193529 + 227934632 227934784 MLT1B 390 + 14 155 77092 12 1 0 44 10 12 38 27 15 20 chain 6158 chr2 242193529 + 227950672 227950740 THE1D-int 1627 + 1554 1622 80508 68 chain 23951 chr2 242193529 + 227951848 227952209 THE1B 368 + 0 368 50865 44 0 15 113 11 10 10 3 1 66 7 9 25 1 0 16 6 0 59 chain 22342 chr2 242193529 + 227974521 227974904 THE1C 375 + 0 375 53352 28 3 0 5 0 5 146 19 16 31 29 18 34 17 21 71 chain 14616 chr2 242193529 + 227986282 227986566 L1PB1 5432 + 5168 5427 62780 52 2 1 15 1 0 43 2 1 16 1 0 4 2 0 11 9 0 16 2 0 5 17 14 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 501946 chr2 242193529 + 228030894 228045759 L1PA4 6152 + 0 6152 3060 136 1 15 429 1 0 253 17 0 210 0 2 284 0 3 5 22 19 93 0 1 223 0 4 388 1 0 3123 8909 194 770 chain 9792 chr2 242193529 + 228048622 228048742 Tigger3a 397 + 170 290 70845 120 chain 115153 chr2 242193529 + 228076271 228077800 THE1B-int 1605 + 0 1585 16363 302 0 1 123 13 38 75 7 8 359 0 3 8 19 45 48 14 5 4 0 2 68 3 10 486 chain 11635 chr2 242193529 + 228080788 228080977 L1MA8 2339 + 1589 1774 67503 12 12 5 36 6 1 54 0 8 69 chain 43452 chr2 242193529 + 228083534 228084099 L1PA8 5853 + 5295 5853 32478 220 6 7 42 1 0 46 2 0 68 2 1 10 1 0 71 1 0 73 3 1 19 chain 76545 chr2 242193529 + 228091260 228093048 L1PB1 5432 + 4310 5423 22428 267 0 1 35 1 0 13 3 0 79 4 3 104 0 1 290 647 4 9 0 2 20 10 8 12 5 1 9 2 0 52 2 1 15 1 0 38 12 11 11 24 12 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 19 chain 7604 chr2 242193529 + 228213200 228213371 L1MA3 4352 + 4189 4352 75861 26 13 14 31 2 0 22 13 11 21 1 0 14 10 6 18 chain 105957 chr2 242193529 + 228218506 228219767 L1PA6 6164 + 4900 6162 17571 415 0 1 566 1 0 196 1 2 82 chain 10588 chr2 242193529 + 228319805 228319934 MER85 139 + 0 139 69248 90 0 10 39 chain 28898 chr2 242193529 + 228406781 228407155 THE1C 375 + 0 375 43478 129 0 1 53 1 2 164 1 0 26 chain 21306 chr2 242193529 + 228428613 228428951 THE1B 368 + 0 340 54756 39 1 0 115 0 1 14 1 0 22 50 53 96 chain 23123 chr2 242193529 + 228437445 228437739 MLT2A1 477 + 4 306 52178 13 0 4 121 0 1 25 1 5 22 3 2 109 chain 184426 chr2 242193529 + 228535670 228538278 MER4-int 2692 + 78 2692 10366 21 1 0 21 5 0 42 19 19 301 7 9 38 12 12 18 1 0 4 0 1 30 0 1 106 2 1 13 14 11 58 0 13 300 1 6 214 17 14 107 0 1 70 5 0 121 0 1 129 2 3 17 1 0 110 0 2 122 5 4 110 0 2 13 2 0 123 40 37 70 1 4 114 0 1 57 3 2 141 chain 548130 chr2 242193529 + 228568257 228574281 L1PA2 6032 + 0 6029 854 197 2 1 58 1 0 656 1 0 2883 0 1 179 0 2 343 0 1 1126 0 4 578 chain 9175 chr2 242193529 + 228614686 228614810 MER4D1 891 + 78 200 72181 11 2 0 111 chain 14095 chr2 242193529 + 228665710 228665924 L1PA8 5853 + 5581 5785 63463 27 3 1 73 6 1 12 7 6 39 2 1 19 1 0 25 chain 145149 chr2 242193529 + 228695630 228697351 L1PA6 6164 + 4432 6159 12679 368 4 5 513 0 4 822 0 1 14 chain 79550 chr2 242193529 + 228742383 228743263 L1PA4 6152 + 4313 5193 21733 880 chain 555670 chr2 242193529 + 228755693 228761717 L1PA2 6032 + 0 6027 373 256 1 0 2786 0 1 1145 0 1 1411 0 2 425 chain 17878 chr2 242193529 + 228784736 228784950 L1PA7 6471 + 6256 6470 58790 214 chain 53232 chr2 242193529 + 228814343 228815219 L1PB 1623 + 729 1575 28493 55 8 24 5 0 1 91 18 0 17 1 6 157 3 4 62 3 1 6 0 2 144 2 1 141 1 0 7 2 1 30 83 62 7 11 0 22 chain 19970 chr2 242193529 + 228829443 228829745 THE1B 368 + 0 307 56439 116 0 1 25 1 3 24 1 0 9 0 2 13 2 0 6 0 1 14 28 30 63 chain 206427 chr2 242193529 + 228830871 228833155 L1PA3long 6157 + 3874 6154 9489 733 8 0 1216 0 1 316 0 3 11 chain 43831 chr2 242193529 + 228843480 228843979 L1PA4 6152 + 5639 6141 32228 178 0 1 161 5 7 155 chain 40330 chr2 242193529 + 228846979 228847525 MLT2A2 560 + 0 560 34426 296 3 4 105 1 12 72 0 1 10 9 10 50 chain 205632 chr2 242193529 + 228853690 228855929 L1PA2 6032 + 3792 6031 9517 2239 chain 21952 chr2 242193529 + 228908132 228908458 L1PA8 5853 + 5532 5853 53899 8 0 1 23 1 0 44 2 0 70 2 1 57 10 9 13 4 3 92 chain 43877 chr2 242193529 + 228910448 228911021 L1PA10 4194 + 3261 3841 32206 22 5 8 239 10 11 70 0 1 122 0 2 105 chain 166261 chr2 242193529 + 228946490 228948354 L1PA4 6152 + 3636 5514 11322 57 2 0 580 0 7 67 0 4 187 0 6 750 1 0 220 chain 4992 chr2 242193529 + 228951401 228951865 L1MB8 1703 + 1014 1492 85694 49 304 315 26 67 70 18 chain 22773 chr2 242193529 + 228967798 228968151 THE1D 372 + 18 372 52716 21 15 3 124 20 28 44 0 6 64 6 6 26 1 0 32 chain 74866 chr2 242193529 + 229020840 229021684 L1PA4 6152 + 5302 6152 22875 735 1 2 102 0 5 6 chain 5323 chr2 242193529 + 229028997 229029062 L1PA16 3655 + 3512 3578 84084 18 0 1 47 chain 22750 chr2 242193529 + 229033417 229033685 L1PA7 6471 + 6197 6466 52757 255 0 1 13 chain 4577 chr2 242193529 + 229039467 229039528 Charlie2b 853 + 734 795 87930 61 chain 3288 chr2 242193529 + 229121139 229121178 MLT2B1 522 + 475 514 97133 39 chain 72298 chr2 242193529 + 229142565 229143356 L1PA3long 6157 + 5366 6157 23464 791 chain 19933 chr2 242193529 + 229146225 229146492 L1PA8 5853 + 5591 5852 56474 20 2 0 68 1 0 9 1 0 52 2 1 19 2 1 91 chain 2856 chr2 242193529 + 229222906 229222936 MLT2B4 540 + 506 536 101197 30 chain 4477 chr2 242193529 + 229288677 229288727 HERVK11D-int 613 + 563 613 88458 50 chain 68632 chr2 242193529 + 229288727 229289503 MER11D 897 + 0 799 24304 593 1 24 182 chain 7800 chr2 242193529 + 229346600 229346702 MER20 218 + 52 159 75378 31 1 6 70 chain 33881 chr2 242193529 + 229354165 229354536 L1PA4 6152 + 5769 6140 38799 371 chain 542445 chr2 242193529 + 229380975 229387476 L1PA7 6471 + 0 6460 1180 404 3 0 575 0 13 165 1 3 660 0 2 109 0 3 95 0 1 489 0 2 118 10 12 1279 0 1 167 67 0 44 0 3 166 0 3 402 0 2 50 0 1 61 1 0 791 4 0 82 1 0 757 chain 32552 chr2 242193529 + 229430307 229430747 MLT2A1 477 + 2 477 39911 168 4 1 8 0 1 24 0 1 8 3 1 166 1 5 18 3 37 37 chain 5207 chr2 242193529 + 229500983 229501311 L1MA8 2339 + 1979 2262 84642 28 4 3 25 134 93 21 18 24 19 55 47 18 1 0 5 chain 7158 chr2 242193529 + 229511995 229512100 L1PB1 5432 + 5047 5149 77075 56 1 2 9 3 0 22 1 0 13 chain 9325 chr2 242193529 + 229541470 229541576 MER85 139 + 10 116 71862 106 chain 25086 chr2 242193529 + 229548306 229548595 L1PA7 6471 + 6024 6313 49140 289 chain 11731 chr2 242193529 + 229548605 229548748 L1PA7 6471 + 6322 6465 67349 143 chain 25944 chr2 242193529 + 229613894 229614188 L1PA4 6152 + 5859 6152 47801 143 1 0 150 chain 66932 chr2 242193529 + 229668580 229669355 L1PA7 6471 + 5670 6449 24715 497 0 4 278 chain 1819 chr2 242193529 + 229693015 229693162 THE1C 375 + 0 144 45125 125 3 0 19 chain 6323 chr2 242193529 + 229693310 229693390 THE1C 375 + 294 373 79918 56 1 0 23 chain 112385 chr2 242193529 + 229693392 229694921 THE1C-int 1605 + 0 1605 16766 14 2 1 52 11 86 17 10 7 152 0 6 105 10 17 217 0 1 30 1 0 4 6 7 36 6 0 394 6 3 14 8 7 396 0 1 38 chain 5453 chr2 242193529 + 229694921 229694984 THE1C 375 + 0 63 83446 63 chain 2870 chr2 242193529 + 229695033 229695265 THE1C 375 + 144 375 45125 206 1 0 25 chain 96780 chr2 242193529 + 229728848 229729948 L1PA5 6144 + 5021 6138 18682 499 0 8 149 0 6 319 0 2 110 0 1 23 chain 168525 chr2 242193529 + 229742161 229744129 SVA_D 2077 + 19 2064 11185 16 3 1 506 0 40 141 0 1 37 0 40 115 50 1 26 6 0 6 4 0 3 1 0 50 0 1 33 0 2 50 1 0 125 3 0 139 0 49 328 0 10 325 chain 3263 chr2 242193529 + 229742981 229743029 SVA_D 2077 + 917 1231 53233 26 8 274 14 chain 23406 chr2 242193529 + 229770644 229771002 THE1B 368 + 0 368 51747 18 0 1 4 3 1 143 2 1 29 1 0 4 29 42 125 chain 12096 chr2 242193529 + 229827753 229827945 MER30 238 + 36 238 66673 73 1 29 27 15 0 34 3 0 39 chain 116969 chr2 242193529 + 229850536 229851942 LTR12C 1709 + 0 1709 16063 17 0 1 259 5 6 153 2 3 257 0 286 94 0 4 32 1 0 6 2 0 42 1 0 64 0 4 95 0 2 192 0 8 184 chain 30832 chr2 242193529 + 229992954 229993351 MER4E1 777 + 0 419 41282 24 0 1 55 1 3 233 13 32 71 chain 33622 chr2 242193529 + 230119587 230120015 MLT2A1 477 + 0 477 38983 140 0 1 27 1 5 212 0 44 48 chain 212085 chr2 242193529 + 230120029 230122600 HERVL-int 5654 + 3062 5654 9276 51 0 1 109 11 9 103 1 4 272 3 7 294 0 2 48 1 2 8 0 6 8 11 0 15 1 2 813 0 1 618 0 3 139 5 0 14 0 17 46 chain 32486 chr2 242193529 + 230122600 230123279 MLT2A1 477 + 0 467 39958 142 0 1 25 1 5 184 5 9 18 248 33 6 6 0 44 chain 137125 chr2 242193529 + 230191100 230192745 L1PA8A 6298 + 3136 4794 13327 228 0 1 54 0 4 23 0 3 31 0 1 11 1 0 205 5 4 4 0 1 27 0 1 72 1 0 73 1 0 188 0 1 493 0 1 126 0 4 102 chain 56032 chr2 242193529 + 230256050 230256679 L1PA5 6144 + 5511 6141 27552 478 0 1 151 chain 23074 chr2 242193529 + 230271971 230272289 L1PA13 3608 + 3128 3437 52255 31 2 1 32 0 1 5 1 0 74 4 0 63 1 0 56 1 0 5 2 0 41 chain 27260 chr2 242193529 + 230272335 230272708 THE1B 368 + 0 368 45883 148 1 0 24 1 0 28 2 0 100 0 1 5 8 6 56 chain 251532 chr2 242193529 + 230299970 230303968 L1PBa 3878 + 48 3737 8187 12 3 0 3 1 0 12 55 47 13 64 18 11 3 1 32 168 19 21 2 0 211 0 1 74 1 0 72 0 2 190 0 1 6 1 0 172 0 7 10 6 5 72 5 10 135 8 10 41 27 35 15 4 1 107 2 3 154 0 1 20 0 1 4 1 0 5 0 1 150 5 9 228 0 4 39 281 0 156 0 1 522 0 2 333 15 16 10 4 0 143 11 163 96 0 1 239 2 1 21 chain 16114 chr2 242193529 + 230308039 230308387 L1PB1 5432 + 5114 5430 60879 23 1 0 9 1 0 12 5 1 9 3 1 50 5 4 14 1 0 44 7 6 10 3 0 11 8 0 18 13 10 10 3 1 26 2 1 18 1 0 9 1 0 17 1 0 8 1 0 4 chain 65158 chr2 242193529 + 230523092 230525397 LOR1-int 1871 + 78 1569 25147 10 12 0 64 18 20 20 52 44 20 3 1 29 1 0 49 182 33 27 5 4 28 308 0 123 356 0 27 15 26 16 5 6 56 0 1 39 5 6 20 69 109 33 2 0 18 0 1 89 10 7 82 1 0 1 1 0 9 3 0 34 1 0 97 33 33 10 20 19 60 19 4 19 14 13 31 0 11 7 105 88 47 chain 499338 chr2 242193529 + 230525443 230531537 L1PA6 6164 + 1 6152 3152 222 37 53 173 8 0 120 1 0 218 0 17 268 0 1 198 10 0 942 0 2 118 0 1 40 5 0 4 2 0 83 1 3 382 0 1 53 0 1 283 5 6 333 0 1 426 0 1 17 2 0 1199 0 1 127 1 5 11 0 5 74 1 3 550 0 1 68 1 0 32 4 33 75 chain 38286 chr2 242193529 + 230547990 230548868 PRIMA4_LTR 623 + 0 623 35853 88 2 3 86 15 11 19 304 0 111 0 56 51 0 5 7 0 1 4 14 0 97 29 33 51 chain 73847 chr2 242193529 + 230552775 230553713 L1PA10 4194 + 3211 4146 23133 413 0 2 406 12 12 61 4 2 10 3 0 29 chain 530013 chr2 242193529 + 230603347 230610128 L1PA7 6471 + 0 6467 1823 167 15 21 218 7 6 236 2 1 6 0 1 936 0 8 169 0 20 115 1 0 233 1 0 6 0 1 497 1 0 608 22 7 289 9 13 445 11 0 319 12 1 162 316 0 40 0 4 768 0 1 73 0 1 230 0 4 8 0 3 328 15 4 358 3 5 4 1 0 142 0 1 8 chain 499709 chr2 242193529 + 230619262 230625732 L1PA6 6164 + 0 6149 3137 227 3 1 217 13 5 117 1 0 220 0 17 126 7 8 344 3 5 574 8 1 306 1 0 114 1 2 46 1 0 44 5 0 4 2 0 466 335 5 340 0 1 49 0 5 107 2 0 352 2 0 662 0 4 280 1 0 4 0 1 66 0 1 181 1 0 207 24 24 34 0 5 182 0 2 131 1 2 64 0 1 595 chain 44894 chr2 242193529 + 230647581 230648134 MER41A 554 + 0 554 31642 97 0 1 220 0 1 59 4 3 173 chain 33817 chr2 242193529 + 230652704 230653175 LTR10F 562 + 0 562 38836 81 0 5 22 0 56 36 0 31 25 7 0 10 31 37 259 chain 42257 chr2 242193529 + 230654861 230655716 MER41A 554 + 0 554 33213 91 1 2 53 9 6 162 0 1 77 0 7 36 312 0 33 0 5 81 chain 37958 chr2 242193529 + 230673884 230674346 LTR2 463 + 0 463 36103 362 12 13 88 chain 10234 chr2 242193529 + 230688824 230688953 MER85 139 + 0 139 69936 89 0 10 40 chain 6826 chr2 242193529 + 230752140 230752224 U6 107 + 0 84 78215 84 chain 281432 chr2 242193529 + 230802109 230805407 L1PA6 6164 + 2846 6162 7388 224 9 13 101 5 6 81 0 2 430 0 3 656 0 4 147 0 4 385 1 0 260 1 6 147 1 0 642 3 0 55 1 0 4 0 1 145 chain 2817 chr2 242193529 + 230823955 230823989 LTR16C 481 + 447 481 101542 34 chain 33572 chr2 242193529 + 230832263 230832696 MER57A1 433 + 0 433 39024 187 0 2 82 9 4 6 0 3 149 chain 12898 chr2 242193529 + 230850810 230850953 L1PA3long 6157 + 6004 6153 65260 100 0 6 43 chain 24000 chr2 242193529 + 230936236 230936615 THE1C 375 + 0 374 50792 60 34 26 94 5 6 18 6 8 35 10 11 91 1 0 25 chain 2988 chr2 242193529 + 230973109 230973143 MSTA 426 + 380 414 99978 34 chain 3717 chr2 242193529 + 231031653 231031803 MER3 215 + 47 198 93480 33 91 92 26 chain 10465 chr2 242193529 + 231033103 231033243 MER85 139 + 0 139 69484 101 5 4 34 chain 23089 chr2 242193529 + 231039061 231039320 L1PA4 6152 + 5879 6138 52227 259 chain 5286 chr2 242193529 + 231077468 231077542 MER51E 476 + 304 377 84263 31 2 1 41 chain 7313 chr2 242193529 + 231102155 231102244 Tigger1 2417 + 2257 2346 76624 89 chain 29450 chr2 242193529 + 231131481 231131790 AluYa5 310 + 1 310 42671 309 chain 11413 chr2 242193529 + 231167710 231167935 L1MB7 1623 + 946 1172 67885 42 33 32 17 1 0 4 15 18 49 1 0 40 0 1 23 chain 29221 chr2 242193529 + 231202794 231203170 LTR19B 566 + 181 566 43016 92 0 4 214 0 9 11 0 3 32 7 0 20 chain 14825 chr2 242193529 + 231265137 231265382 L1PB2 3958 + 3590 3838 62486 27 1 0 64 11 10 64 29 34 49 chain 56573 chr2 242193529 + 231348473 231349294 L1MA2 4263 + 3303 4114 27402 137 0 2 139 10 5 76 1 0 23 0 2 122 3 0 119 38 37 93 17 13 27 0 1 6 1 0 9 chain 81227 chr2 242193529 + 231375866 231376921 MER11C 1089 + 0 1063 21384 98 1 0 148 0 9 62 0 4 64 1 0 131 1 0 18 40 34 4 1 0 118 0 4 43 0 1 127 0 1 54 1 0 143 chain 43471 chr2 242193529 + 231400711 231401206 LTR2C 499 + 0 499 32468 175 1 4 261 0 1 58 chain 286402 chr2 242193529 + 231402311 231405692 HERVE-int 4064 + 0 3359 7248 521 1 0 289 0 1 149 0 1 4 1 0 568 26 1 836 3 5 690 0 1 293 chain 43856 chr2 242193529 + 231408351 231408843 LTR2C 499 + 6 499 32216 434 0 1 58 chain 33675 chr2 242193529 + 231430428 231430885 LTR7B 505 + 0 505 38950 93 0 31 84 7 5 14 4 25 189 14 13 20 0 1 11 2 0 19 chain 9890 chr2 242193529 + 231439955 231440111 MER50 708 + 510 667 70638 66 5 8 33 1 6 8 7 0 36 chain 6038 chr2 242193529 + 231474621 231474708 L1MB2 1706 + 1598 1694 80933 13 1 0 48 0 10 25 chain 6038 chr2 242193529 + 231541190 231541267 Tigger2 2703 + 2578 2655 80935 77 chain 4863 chr2 242193529 + 231547401 231547462 MLT2C1 407 + 40 101 86356 61 chain 23790 chr2 242193529 + 231569532 231569891 LTR7 482 + 0 482 51122 31 34 123 70 0 1 31 0 32 131 15 16 47 chain 73049 chr2 242193529 + 231576783 231577743 LTR5_Hs 974 + 0 974 23307 115 5 13 161 0 1 171 6 7 188 1 0 163 8 15 19 20 18 103 chain 5121 chr2 242193529 + 231711524 231711584 U4 144 + 0 60 85053 60 chain 6278 chr2 242193529 + 231746447 231746522 MER30 238 + 163 238 80068 75 chain 12362 chr2 242193529 + 231747892 231748066 THE1A 353 + 184 353 66212 108 15 10 51 chain 118771 chr2 242193529 + 231748066 231749957 THE1A-int 1579 + 0 1573 15755 25 1 0 144 2 1 5 0 1 9 18 34 126 0 3 123 0 4 226 0 5 11 0 2 150 11 14 199 0 3 359 358 5 124 chain 21030 chr2 242193529 + 231749962 231750303 THE1A 353 + 0 353 55082 79 7 6 24 25 31 84 0 3 68 0 1 4 15 18 35 chain 5627 chr2 242193529 + 231757886 231757950 U6 107 + 0 64 82672 64 chain 4348 chr2 242193529 + 231822737 231822786 MER20 218 + 95 144 89185 49 chain 6707 chr2 242193529 + 232020668 232020815 MIR 256 + 14 183 78619 23 39 59 38 6 8 41 chain 183640 chr2 242193529 + 232106352 232109165 L1PA11 4918 + 1308 3779 10402 43 14 15 67 42 0 170 0 4 66 4 0 142 29 27 405 1 0 35 4 10 43 314 14 177 0 4 52 1 13 27 0 2 19 0 1 131 1 0 36 0 10 187 2 0 109 27 0 81 0 1 42 5 0 424 0 1 113 chain 20062 chr2 242193529 + 232115540 232115882 THE1D 372 + 0 372 56299 51 14 24 93 0 4 10 8 11 28 15 28 31 5 6 50 2 1 35 chain 20375 chr2 242193529 + 232166442 232166709 AluSc 308 + 0 274 55915 18 1 0 35 11 19 202 chain 3379 chr2 242193529 + 232251639 232251913 HAL1 992 + 284 573 96309 32 179 196 19 26 24 18 chain 21259 chr2 242193529 + 232302153 232302399 L1PA5 6144 + 5900 6144 54813 235 2 0 9 chain 542670 chr2 242193529 + 232355240 232361245 L1PA3long 6157 + 0 6156 1166 152 0 1 604 0 2 17 0 128 618 4 2 329 0 5 929 0 4 375 0 2 2031 0 8 100 1 0 27 0 4 818 chain 85595 chr2 242193529 + 232366156 232367134 LTR12C 1709 + 0 1095 20522 36 1 0 614 0 119 68 1 0 258 chain 82127 chr2 242193529 + 232422992 232423965 LTR5_Hs 974 + 0 974 21219 261 18 0 25 0 6 246 1 2 11 0 1 272 0 7 42 2 0 15 0 6 80 chain 14320 chr2 242193529 + 232559078 232559235 L1PA2 6032 + 5875 6032 63167 157 chain 30890 chr2 242193529 + 232596719 232597068 L1PA5 6144 + 5796 6142 41226 333 3 0 13 chain 10225 chr2 242193529 + 232649940 232650152 7SLRNA 320 + 104 304 69957 36 76 64 100 chain 5851 chr2 242193529 + 232782664 232782734 U6 107 + 0 73 81688 47 0 3 23 chain 4174 chr2 242193529 + 232796426 232796537 Tigger4a 237 + 3 122 90306 42 46 54 23 chain 16767 chr2 242193529 + 232826515 232826725 L1PA6 6164 + 5131 5349 60069 32 0 5 69 3 2 79 0 4 27 chain 16353 chr2 242193529 + 232826981 232827183 Tigger1 2417 + 960 1164 60570 154 0 2 48 chain 158731 chr2 242193529 + 232905106 232907176 SVA_D 2077 + 42 2077 11828 4 1 0 5 0 1 5 3 0 643 0 77 131 2 0 8 3 1 26 45 5 87 0 1 6 97 0 44 2 0 97 49 0 134 0 1 16 0 98 60 37 0 431 0 20 134 chain 4071 chr2 242193529 + 232905937 232905982 SVA_D 2077 + 1257 1302 52395 45 chain 6956 chr2 242193529 + 232906075 232906166 SVA_D 2077 + 1043 1135 38977 87 0 1 4 chain 3745 chr2 242193529 + 232906315 232906364 SVA_D 2077 + 1310 1408 38977 7 0 1 22 1 0 12 0 49 7 chain 3216 chr2 242193529 + 232906574 232906611 SVA_D 2077 + 1267 1304 50267 37 chain 8311 chr2 242193529 + 232924370 232924473 MLT1A0 366 + 244 347 74134 103 chain 16634 chr2 242193529 + 232946069 232946421 L1PB1 5432 + 5105 5420 60233 9 7 0 24 1 0 9 1 0 10 16 10 10 0 1 41 1 0 18 2 1 43 1 0 15 3 0 8 13 4 19 2 0 5 1 0 14 14 12 12 1 0 21 1 0 13 1 0 16 chain 41847 chr2 242193529 + 233019650 233020110 L1PA5 6144 + 5675 6135 33459 460 chain 22215 chr2 242193529 + 233028751 233029091 MER4D1 891 + 182 546 53528 6 0 2 76 1 3 102 1 0 59 1 0 32 7 25 18 20 24 17 chain 4751 chr2 242193529 + 233133616 233133673 MER53 195 + 130 187 86958 57 chain 23140 chr2 242193529 + 233150132 233150496 THE1B 368 + 0 368 52158 64 51 50 55 1 0 29 0 3 8 1 5 16 1 0 138 chain 4100 chr2 242193529 + 233221306 233221358 MER53 195 + 143 195 90773 52 chain 4888 chr2 242193529 + 233417935 233417992 MER20 218 + 161 218 86213 57 chain 75754 chr2 242193529 + 233430959 233432110 L1MA3 4352 + 2217 3322 22643 28 8 3 65 1 0 39 1 0 14 0 4 61 2 0 147 3 1 162 0 11 17 31 21 91 0 2 212 0 5 22 2 7 57 1 2 29 1 0 11 60 8 86 chain 38327 chr2 242193529 + 233517199 233518165 L1PB1 5432 + 4841 5420 35829 167 320 0 91 51 15 24 1 0 9 1 0 9 17 11 52 3 2 16 1 0 44 1 0 15 3 0 15 9 0 16 9 6 13 3 1 23 1 0 21 1 0 13 1 0 16 chain 137330 chr2 242193529 + 233561219 233562723 L1PA3long 6157 + 4647 6155 13315 608 1 0 301 0 5 594 chain 27850 chr2 242193529 + 233640859 233641245 MER83 447 + 0 405 45105 58 0 1 5 2 0 65 0 2 91 12 19 72 3 14 78 chain 56124 chr2 242193529 + 233667266 233667908 L1PA4 6152 + 4874 5517 27527 353 5 6 284 chain 63109 chr2 242193529 + 233701349 233702047 L1P1 4361 + 2486 3181 25600 679 3 0 16 chain 35145 chr2 242193529 + 233765241 233765680 L1PA8A 6298 + 5815 6255 37930 360 0 8 4 1 0 13 6 0 55 chain 4095 chr2 242193529 + 233874934 233874984 MLT2A2 560 + 506 560 90815 44 0 4 6 chain 30942 chr2 242193529 + 233895689 233896694 L1PB1 5432 + 4768 5392 41180 36 23 23 112 21 8 124 4 0 26 408 84 39 2 1 15 1 0 8 21 0 14 0 2 19 2 1 16 1 0 4 19 8 16 28 23 23 1 0 22 chain 9416 chr2 242193529 + 233948355 233948478 MER85 139 + 4 138 71662 80 6 17 37 chain 19061 chr2 242193529 + 233987672 233988022 THE1B 368 + 7 344 57482 99 97 93 111 9 0 34 chain 51001 chr2 242193529 + 234039078 234039650 L1PA5 6144 + 5571 6144 29211 239 0 1 333 chain 71645 chr2 242193529 + 234049003 234049846 L1PA7 6471 + 5618 6457 23624 6 4 0 833 chain 53180 chr2 242193529 + 234106642 234107378 L1PA8 5853 + 5121 5853 28504 25 1 0 207 13 9 111 0 1 90 1 0 43 3 1 19 0 6 45 2 1 10 1 0 51 2 1 19 2 1 40 0 1 23 1 3 6 2 0 19 chain 32171 chr2 242193529 + 234136490 234137054 MER4B 649 + 14 629 40216 42 3 4 50 3 0 5 6 2 40 0 42 12 0 25 98 19 27 42 40 22 51 1 0 10 0 1 27 19 20 30 1 0 65 chain 29122 chr2 242193529 + 234186929 234187300 THE1B 368 + 0 368 43159 166 9 8 18 2 0 176 chain 69824 chr2 242193529 + 234193088 234193844 L1PA3long 6157 + 4617 5373 24039 756 chain 29498 chr2 242193529 + 234277179 234277512 L1PA4 6152 + 5818 6152 42610 182 3 4 148 chain 7955 chr2 242193529 + 234284900 234284993 MSTD 398 + 7 100 74990 93 chain 10364 chr2 242193529 + 234311867 234311992 THE1B 368 + 244 368 69683 49 1 0 75 chain 83915 chr2 242193529 + 234351753 234352725 LTR13A 966 + 0 966 20828 72 5 0 755 1 0 139 chain 45828 chr2 242193529 + 234384123 234384636 MER9a2 513 + 0 513 31147 513 chain 105010 chr2 242193529 + 234388875 234390502 L1PA8 5853 + 4470 5853 17687 110 0 1 176 272 0 103 0 11 61 0 1 76 8 10 223 0 7 60 0 1 30 0 11 207 7 6 44 2 0 9 1 0 4 0 1 60 1 0 14 1 0 44 2 1 19 2 1 76 0 1 15 chain 29267 chr2 242193529 + 234407387 234407806 Tigger3b 1229 + 335 766 42938 123 3 2 122 0 2 37 2 3 9 1 2 47 0 2 7 6 8 43 0 5 19 chain 8419 chr2 242193529 + 234423741 234423882 MLT1D 503 + 352 503 73862 5 1 0 30 6 16 52 6 7 41 chain 51196 chr2 242193529 + 234431794 234432465 L1PA8 5853 + 5183 5853 29168 226 1 8 147 1 0 44 2 0 71 1 0 8 2 1 10 1 0 42 2 1 19 2 1 92 chain 46413 chr2 242193529 + 234530509 234531152 MER4B 649 + 1 641 30876 55 7 8 130 4 0 84 3 0 89 0 4 183 9 8 39 0 1 31 1 0 8 chain 5045 chr2 242193529 + 234531999 234532062 L1PB2 3958 + 3618 3681 85442 63 chain 43849 chr2 242193529 + 234532541 234533098 LTR10C 591 + 0 571 32219 138 0 1 304 1 2 55 0 2 24 5 15 30 chain 93990 chr2 242193529 + 234562215 234563625 SVA_A 1864 + 41 1863 19038 53 0 11 72 2 0 331 0 40 28 54 13 27 2 0 105 3 0 30 13 12 23 58 84 16 1 0 60 4 1 10 28 413 186 12 11 280 0 4 12 chain 15342 chr2 242193529 + 234657251 234657485 MER30 238 + 0 238 61860 102 26 33 64 3 0 39 chain 88752 chr2 242193529 + 234663352 234664420 MER11C 1089 + 0 1079 19900 101 0 7 237 2 1 15 0 5 713 chain 62606 chr2 242193529 + 234693544 234694307 MER4E1 777 + 0 770 25730 17 1 0 369 1 0 76 1 2 77 1 9 220 chain 18119 chr2 242193529 + 234702129 234702490 THE1B 368 + 0 368 58548 111 0 3 6 17 15 42 76 82 29 0 1 12 12 11 56 chain 3526 chr2 242193529 + 234705894 234705933 MSTA 426 + 387 426 95048 39 chain 47687 chr2 242193529 + 234739932 234740532 L1PA7 6471 + 5872 6470 30404 395 7 8 33 14 15 126 1 2 13 5 0 6 chain 10359 chr2 242193529 + 234740566 234740696 MER4D1 891 + 735 866 69690 89 0 1 41 chain 74652 chr2 242193529 + 234746050 234747095 HSMAR1 1287 + 0 1051 22923 31 1 0 37 7 8 86 4 3 390 17 15 186 0 4 88 0 1 53 0 1 8 34 37 103 chain 20671 chr2 242193529 + 234757524 234757743 L1PA3long 6157 + 5934 6153 55537 219 chain 527835 chr2 242193529 + 234775486 234781643 L1PA5 6144 + 18 6143 1926 734 12 13 249 16 7 148 24 15 1129 2 1 267 0 1 594 1 0 333 1 0 726 0 2 37 14 0 3 4 0 199 0 2 45 0 1 1619 chain 15756 chr2 242193529 + 234840173 234840392 MLT2A2 560 + 6 560 61345 39 0 226 24 9 118 147 chain 556660 chr2 242193529 + 234888389 234894419 L1PA2 6032 + 0 6032 318 74 0 1 2189 0 4 2245 1 0 1514 2 0 5 chain 5481 chr2 242193529 + 234896441 234896514 MLT1A0 366 + 244 316 83311 20 1 0 52 chain 11738 chr2 242193529 + 234915689 234915945 L1PA11 4918 + 4350 4578 67337 40 6 4 13 2 0 40 0 1 24 2 0 16 1 0 20 50 31 14 2 1 13 2 0 11 chain 21832 chr2 242193529 + 235017197 235017467 AluSg7 307 + 30 302 54065 77 1 2 22 0 1 170 chain 123633 chr2 242193529 + 235070866 235072939 L1PB1 5432 + 3698 5420 14911 30 1 4 226 1 0 244 0 1 396 0 6 22 5 7 159 1 9 263 1 0 38 20 2 11 0 3 19 1 0 9 1 0 10 15 10 47 2 0 6 2 1 14 5 4 36 6 5 16 3 0 6 16 6 13 353 27 22 1 0 22 2 1 11 1 0 16 chain 23428 chr2 242193529 + 235154503 235154863 THE1B 368 + 0 366 51708 61 8 9 99 1 0 21 34 40 10 1 0 24 0 1 101 chain 11558 chr2 242193529 + 235185814 235185968 L1P3 4156 + 3988 4139 67645 119 2 0 5 5 4 23 chain 7433 chr2 242193529 + 235197323 235197409 LTR24B 570 + 0 86 76297 86 chain 9501 chr2 242193529 + 235248285 235248479 MER2 342 + 9 211 71469 35 58 66 101 chain 5185 chr2 242193529 + 235272212 235272275 L1MC3 1789 + 1123 1186 84752 63 chain 86597 chr2 242193529 + 235306849 235307821 L1PA5 6144 + 4991 5962 20300 303 1 0 668 chain 43418 chr2 242193529 + 235321552 235322093 MER41A 554 + 0 554 32492 376 0 7 35 8 9 41 0 5 81 chain 3502 chr2 242193529 + 235325798 235325835 MLT1C 463 + 58 95 95232 37 chain 43620 chr2 242193529 + 235325974 235326776 L1PB1 5432 + 4718 5414 32370 134 5 7 70 5 0 168 88 15 24 1 0 8 1 0 12 7 3 9 2 0 52 2 1 16 2 1 42 1 0 14 25 14 18 25 20 24 1 0 21 1 0 13 1 0 10 chain 2834 chr2 242193529 + 235363022 235363055 MER33 330 + 205 238 101371 33 chain 3356 chr2 242193529 + 235373646 235373681 MER5A 189 + 5 40 96530 35 chain 22322 chr2 242193529 + 235375003 235375284 AluSc 308 + 0 292 53376 23 0 8 61 0 1 173 10 12 14 chain 9639 chr2 242193529 + 235385673 235385797 MER85 139 + 5 139 71183 85 0 10 39 chain 6494 chr2 242193529 + 235425882 235425959 Tigger1 2417 + 2298 2375 79377 77 chain 29747 chr2 242193529 + 235443711 235444067 MER41A 554 + 0 356 42310 356 chain 3286 chr2 242193529 + 235467610 235467650 AluJb 308 - 203 243 97139 40 chain 47725 chr2 242193529 + 235475781 235476553 L1PA16 3655 + 2875 3619 30383 24 1 0 23 1 0 54 1 0 15 1 0 129 11 12 69 1 0 87 39 37 91 4 3 159 3 1 14 31 12 14 chain 38624 chr2 242193529 + 235656339 235656841 LTR10F 562 + 0 562 35624 106 0 84 38 0 3 30 2 0 4 26 0 151 0 1 145 chain 3932 chr2 242193529 + 236092800 236092983 L1MC4 1079 + 71 254 91888 28 115 116 35 1 0 4 chain 8323 chr2 242193529 + 236144005 236144104 MER63A 208 + 54 153 74105 99 chain 29275 chr2 242193529 + 236183864 236184240 MSTB-int 1649 + 0 369 42930 170 0 1 87 9 0 67 0 1 43 chain 21827 chr2 242193529 + 236197570 236197836 AluSp 311 + 31 296 54069 101 1 0 164 chain 20486 chr2 242193529 + 236202546 236202795 AluSc 308 + 8 297 55795 93 0 40 156 chain 18388 chr2 242193529 + 236221357 236221688 THE1B 368 + 2 368 58254 39 6 7 60 14 15 54 54 87 104 chain 20047 chr2 242193529 + 236271203 236271555 MER4A1 472 + 0 400 56316 14 0 4 26 1 2 38 0 24 27 1 0 61 1 0 5 66 87 112 chain 23916 chr2 242193529 + 236276230 236276639 MSTA 426 + 0 426 50920 28 0 1 67 50 56 52 0 9 8 7 1 50 2 1 27 9 17 109 chain 32468 chr2 242193529 + 236347249 236347841 L1PB1 5432 + 4841 5418 39973 122 0 2 20 13 21 20 10 0 47 0 4 26 7 0 11 3 0 24 1 0 9 16 11 9 2 0 53 2 1 12 8 29 19 1 0 14 3 0 16 9 0 16 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 14 chain 154231 chr2 242193529 + 236410370 236412056 L1PA3long 6157 + 4470 6157 12098 836 0 1 850 chain 205132 chr2 242193529 + 236421116 236423418 L1PA4 6152 + 3044 5358 9532 670 0 3 218 6 7 344 0 2 59 0 4 524 0 1 425 0 1 56 chain 58993 chr2 242193529 + 236438667 236439328 L1P1 4361 + 2580 3242 26669 656 0 1 5 chain 9678 chr2 242193529 + 236639295 236639419 MER85 139 + 5 139 71101 85 0 10 39 chain 40975 chr2 242193529 + 236810980 236811595 MER51A 677 + 0 663 33986 135 3 44 20 10 0 30 0 9 151 32 40 104 5 6 76 7 6 42 chain 4690 chr2 242193529 + 236886854 236886932 MADE1 96 + 0 96 87325 37 0 2 7 10 26 24 chain 64506 chr2 242193529 + 236930221 236930975 L1PA7 6471 + 5710 6466 25309 421 0 1 325 0 1 8 chain 21432 chr2 242193529 + 236951444 236951796 THE1B 368 + 0 368 54601 44 10 39 7 14 0 39 6 7 32 1 0 4 9 8 93 6 9 12 1 0 74 chain 46881 chr2 242193529 + 236974629 236975248 LTR9B 643 + 0 630 30704 98 1 0 103 6 5 305 1 15 77 2 1 26 chain 21009 chr2 242193529 + 236983513 236983830 THE1B 368 + 27 368 55106 17 5 20 104 1 0 30 37 47 123 chain 13623 chr2 242193529 + 237078478 237078647 THE1C 375 + 0 168 64133 19 1 0 149 chain 9982 chr2 242193529 + 237081005 237081129 THE1D 372 + 1 135 70461 71 0 10 22 0 1 4 1 0 26 chain 165692 chr2 242193529 + 237187654 237189439 L1PA2 6032 + 4243 6028 11357 1785 chain 4434 chr2 242193529 + 237218707 237218840 L1MDa 1598 + 444 555 88704 36 1 0 7 67 46 22 chain 73567 chr2 242193529 + 237240505 237241468 MER11A 1151 + 0 1151 23200 55 0 99 22 8 0 51 0 4 63 4 0 149 0 1 94 0 1 145 5 6 51 0 3 63 0 81 19 7 16 49 1 0 11 0 1 127 1 2 38 chain 197347 chr2 242193529 + 237273230 237276142 L1PREC2 3366 + 139 3044 9797 31 1 0 10 2 0 20 7 2 7 1 0 24 2 1 12 1 0 11 4 1 33 9 8 101 2 0 68 1 0 119 44 0 200 2 0 55 1 0 5 0 1 67 3 0 267 0 1 83 9 10 34 0 3 276 5 6 97 0 7 160 0 1 160 0 1 65 1 0 112 7 89 37 17 17 42 1 0 77 0 1 130 0 1 125 1 0 11 0 1 22 4 2 46 9 8 43 8 4 13 29 21 16 7 2 15 3 0 4 0 1 25 37 20 35 5 7 31 chain 38795 chr2 242193529 + 237278126 237278591 LTR2 463 + 0 463 35502 127 0 3 96 5 0 237 chain 26369 chr2 242193529 + 237302423 237302783 THE1A 353 + 2 353 47165 103 6 5 189 13 5 49 chain 121017 chr2 242193529 + 237302783 237304324 THE1A-int 1579 + 0 1574 15346 415 1 2 35 0 1 23 0 2 185 11 8 314 1 2 210 0 28 22 0 3 218 0 1 91 1 0 14 chain 37773 chr2 242193529 + 237319369 237319885 MLT2A2 560 + 15 543 36226 117 42 43 231 0 11 126 chain 3240 chr2 242193529 + 237338786 237338858 MLT1H 522 + 451 520 97573 6 4 0 31 14 15 17 chain 43717 chr2 242193529 + 237353891 237354815 MER4A1_ 611 + 2 611 32310 119 329 13 111 10 11 131 1 0 205 6 7 12 chain 5110 chr2 242193529 + 237401009 237401111 L1MB2 1706 + 319 422 85107 20 31 32 51 chain 14877 chr2 242193529 + 237454923 237455112 LTR39 781 + 542 730 62413 173 1 0 15 chain 221134 chr2 242193529 + 237461653 237464168 L1PA5 6144 + 3618 6130 9007 662 0 2 59 0 4 102 0 1 180 1 0 691 7 1 425 0 3 78 0 1 279 7 0 24 chain 5944 chr2 242193529 + 237563164 237563232 U6 107 + 0 68 81299 68 chain 30171 chr2 242193529 + 237606783 237607195 LTR7 482 + 0 482 41871 69 8 46 79 0 1 6 1 0 23 8 40 218 chain 286250 chr2 242193529 + 237607197 237610988 HERVH-int 3825 + 0 3825 7252 212 4 15 106 1 0 197 1 0 40 1 0 10 1 0 12 66 12 14 1 0 5 33 8 26 24 0 26 2 0 14 1 0 17 109 0 42 0 1 6 0 2 14 0 3 367 1 0 74 14 0 218 0 1 243 4 31 290 0 4 260 0 1 61 0 1 13 0 4 624 144 356 268 0 2 225 chain 30564 chr2 242193529 + 237612242 237612654 LTR7 482 + 0 482 41512 69 8 46 109 8 40 16 1 0 9 0 1 192 chain 51755 chr2 242193529 + 237786594 237787243 LTR14B 630 + 18 630 28952 161 42 0 373 0 5 73 chain 13084 chr2 242193529 + 237826729 237826915 MER2 342 + 88 284 64956 26 7 6 33 0 11 120 chain 66877 chr2 242193529 + 237840218 237841278 L1PA15 4387 + 3319 4356 24729 28 30 32 178 1 0 44 1 0 6 9 0 45 0 4 154 0 2 57 6 4 17 2 0 43 2 1 24 0 3 37 2 0 106 1 0 26 1 0 55 1 0 23 14 9 49 7 4 13 9 11 20 3 1 12 10 5 24 chain 9099 chr2 242193529 + 237932692 237932804 MER30 238 + 129 238 72346 65 3 0 44 chain 21687 chr2 242193529 + 237963678 237964081 MER4D1 891 + 320 731 54243 67 1 8 90 0 1 38 14 17 45 12 17 14 1 0 36 64 57 21 chain 27547 chr2 242193529 + 238051353 238051705 THE1B 368 + 0 368 45517 39 1 16 121 1 0 161 0 2 29 chain 15076 chr2 242193529 + 238076571 238076732 SVA_F 1814 + 1653 1814 62177 161 chain 36980 chr2 242193529 + 238271677 238272138 LTR19A 502 + 0 502 36748 178 0 37 17 6 5 74 1 2 175 0 4 10 chain 106327 chr2 242193529 + 238395356 238396540 L1PA4 6152 + 4963 6152 17519 44 0 1 290 0 4 850 chain 4643 chr2 242193529 + 238412659 238412713 U6 107 + 20 74 87568 54 chain 4033 chr2 242193529 + 238484257 238484360 Charlie12 129 + 33 129 91222 19 32 27 19 1 0 3 1 0 28 chain 62384 chr2 242193529 + 238513822 238514575 LTR17 781 + 0 774 25780 327 1 0 368 2 24 55 chain 18345 chr2 242193529 + 238594595 238594849 MER66D 528 + 273 528 58309 85 2 1 56 7 9 104 chain 336469 chr2 242193529 + 238606975 238611868 L1PB1 5432 + 20 5427 6122 99 17 23 41 1 0 181 1 0 37 1 0 143 2 1 57 3 2 78 11 15 137 2 0 44 0 1 174 1 0 16 24 27 293 16 20 504 0 2 239 1 2 112 0 3 63 7 3 158 9 0 51 1 0 80 0 40 38 3 4 76 56 673 263 2 10 173 6 7 48 2 0 155 1 0 72 9 15 119 0 1 55 5 6 59 8 12 35 28 27 107 3 0 183 1 9 182 21 21 87 35 0 11 107 0 20 1 0 12 1 0 12 5 1 10 11 9 42 2 1 15 1 0 45 1 0 10 26 17 19 2 0 4 1 0 15 2 0 24 1 0 22 0 3 9 1 0 15 1 0 4 1 0 4 chain 3527 chr2 242193529 + 238628030 238628074 MER58A 224 + 168 213 95045 6 0 1 38 chain 5678 chr2 242193529 + 238869531 238869602 L1MB3 1562 + 766 837 82438 71 chain 32635 chr2 242193529 + 238918667 238919272 L1PB1 5432 + 4855 5410 39828 104 4 6 129 0 1 8 1 0 16 37 15 13 16 11 9 2 0 45 1 0 7 3 2 16 1 0 43 1 0 14 24 14 9 1 0 10 8 5 14 2 0 24 1 0 21 1 0 11 1 0 8 chain 6189 chr2 242193529 + 238921200 238921271 MER41A 554 + 395 466 80394 71 chain 183471 chr2 242193529 + 238959973 238962649 L1PB1 5432 + 2844 5423 10413 5 0 1 245 1 0 472 0 2 379 0 1 13 25 24 136 0 2 38 0 13 16 14 0 238 1 0 5 0 1 110 2 1 80 3 0 226 8 9 134 1 2 101 89 16 24 1 0 5 2 1 14 5 1 9 2 0 18 1 5 29 2 1 16 1 0 7 5 6 31 1 0 15 54 40 10 2 0 24 1 0 19 8 7 8 1 0 19 chain 125164 chr2 242193529 + 239218250 239219615 L1PA3long 6157 + 4778 6144 14673 1266 0 1 99 chain 10330 chr2 242193529 + 239389343 239389522 LTR12B 2670 + 1497 1670 69739 21 7 4 46 4 0 6 7 11 59 3 0 26 chain 5996 chr2 242193529 + 239553363 239553434 MSTA 426 + 355 426 81091 71 chain 9373 chr2 242193529 + 239638642 239638820 MER49 923 + 4 201 71763 22 19 20 26 0 1 4 1 0 8 1 2 19 7 24 71 chain 68967 chr2 242193529 + 239795802 239796632 SVA_D 2077 + 1038 2077 24219 48 1 2 36 1 79 16 0 1 22 7 84 14 1 2 14 1 51 42 0 1 627 chain 22750 chr2 242193529 + 239834585 239834855 AluY 311 + 10 299 52756 13 0 8 95 0 1 39 0 10 123 chain 129426 chr2 242193529 + 239837674 239839116 L1PA5 6144 + 4679 6130 14101 1024 0 16 271 7 0 140 chain 147148 chr2 242193529 + 239847346 239850292 L1PB1 5432 + 19 5427 12534 11 0 6 211 1 0 61 333 13 71 0 1 13 1 0 96 11 12 26 2 5 92 0 4 125 2 3 138 3 4 473 35 33 34 0 5 40 1 3090 28 14 21 4 0 1 154 0 8 159 0 4 86 1 0 52 16 11 21 1 0 12 1 0 9 327 15 34 17 16 16 1 0 44 82 65 24 1 0 21 1 0 8 6 5 18 3 0 5 chain 6587 chr2 242193529 + 239878987 239879064 MER57A1 433 + 0 77 79026 77 chain 8056 chr2 242193529 + 239891746 239891910 Tigger3a 397 + 140 275 74742 95 49 15 14 0 5 6 chain 149114 chr2 242193529 + 239906713 239908407 L1PA5 6144 + 4437 6144 12408 583 0 12 345 0 1 766 chain 30134 chr2 242193529 + 239909641 239910148 L1PA11 4918 + 4065 4578 41902 68 2 0 79 4 0 79 0 2 34 10 48 18 2 1 12 9 0 68 2 0 14 1 0 18 45 33 15 1 0 13 2 0 11 chain 42083 chr2 242193529 + 239917193 239917860 LTR76 689 + 26 689 33302 23 1 0 80 1 0 7 1 0 161 55 0 14 28 83 81 0 6 25 13 7 85 3 2 89 chain 29159 chr2 242193529 + 239994217 239994700 MER1A 529 + 45 529 43108 35 10 13 28 29 19 7 0 11 8 5 6 282 33 29 46 chain 13875 chr2 242193529 + 239996709 239996920 MER30 238 + 1 238 63763 16 12 20 69 3 19 36 0 5 24 3 0 48 chain 29313 chr2 242193529 + 240019536 240019847 AluYa5 310 + 0 310 42862 132 1 0 178 chain 99672 chr2 242193529 + 240100639 240102177 L1PB3 3668 + 2118 3620 18338 13 0 1 210 0 1 153 8 0 79 3 4 88 5 0 215 17 7 53 17 20 25 2 0 14 2 0 289 1 0 92 11 10 58 8 13 14 21 5 12 1 0 5 6 5 23 4 2 15 0 11 8 28 23 9 4 1 17 1 0 7 chain 51949 chr2 242193529 + 240123254 240123840 L1PA5 6144 + 4742 5329 28884 162 0 1 424 chain 4056 chr2 242193529 + 240160117 240160171 LTR31 607 + 22 75 91035 5 1 0 48 chain 22453 chr2 242193529 + 240165883 240166267 THE1D 372 + 0 371 53194 74 20 1 32 1 2 51 39 40 53 6 8 67 0 2 41 chain 31130 chr2 242193529 + 240190105 240190629 MER4A1 472 + 0 449 41032 26 1 0 73 96 0 97 1 0 29 0 21 13 1 0 88 5 6 45 0 2 49 chain 17167 chr2 242193529 + 240246882 240247244 MSTA 426 + 0 389 59608 40 1 2 5 1 0 45 15 23 14 1 0 15 21 25 35 6 2 8 0 2 10 44 42 28 1 21 72 chain 26527 chr2 242193529 + 240275891 240276271 THE1D 372 + 8 372 46938 53 29 0 11 1 11 107 0 3 179 chain 68458 chr2 242193529 + 240484233 240485047 L1PA7 6471 + 4991 5809 24345 217 1 0 265 5 7 112 5 6 23 1 0 77 0 2 97 0 1 11 chain 69031 chr2 242193529 + 240494821 240495765 LTR13 1007 + 0 954 24205 68 2 0 8 3 0 7 0 3 183 0 2 109 9 10 37 6 0 203 1 0 56 16 26 100 5 6 90 0 5 41 chain 547977 chr2 242193529 + 240544496 240550522 L1PA3long 6157 + 0 6156 864 152 0 1 557 1 0 66 0 128 1888 1 0 2260 0 1 235 1 0 539 0 3 326 chain 44767 chr2 242193529 + 240556198 240556747 LTR14 556 + 3 556 31715 260 1 0 120 0 4 76 1 0 6 4 6 81 chain 22686 chr2 242193529 + 240612187 240612448 AluY 311 + 39 304 52841 84 0 4 177 chain 16288 chr2 242193529 + 240658686 240658892 L1PB1 5432 + 4769 4976 60637 34 3 4 169 chain 7755 chr2 242193529 + 240663354 240663448 MER54B 801 + 702 796 75476 94 chain 6610 chr2 242193529 + 240669945 240670052 MLT1C 463 + 96 205 78944 29 0 1 43 13 14 22 chain 65473 chr2 242193529 + 240671344 240672091 LTR5A 1029 + 0 746 25077 150 1 0 596 chain 11182 chr2 242193529 + 240809769 240809894 L1PA6 6164 + 6037 6162 68278 125 chain 119036 chr2 242193529 + 240845050 240846637 THE1C-int 1605 + 15 1605 15689 312 0 6 99 13 20 59 0 1 372 12 8 60 2 3 42 1 2 146 1 0 7 34 24 386 0 1 32 0 1 9 chain 3049 chr2 242193529 + 240868368 240868410 MER58A 224 + 37 78 99319 12 1 0 29 chain 59319 chr2 242193529 + 240940492 240941262 L1PB 1623 + 685 1466 26562 435 9 19 158 0 3 146 10 8 12 chain 17826 chr2 242193529 + 241032431 241032645 L1PA5 6144 + 5931 6144 58852 64 3 2 147 chain 3965 chr2 242193529 + 241120049 241120128 L1MB7 1623 + 904 985 91659 11 6 7 22 9 10 31 chain 22465 chr2 242193529 + 241328746 241329020 AluSp 311 + 7 282 53168 40 1 2 233 chain 21770 chr2 242193529 + 241357929 241358215 AluSz6 309 + 22 304 54140 121 0 1 153 5 0 7 chain 118704 chr2 242193529 + 241396035 241397344 L1PA3long 6157 + 4847 6157 15769 458 1 2 850 chain 3818 chr2 242193529 + 241427524 241427616 MER2 342 + 229 320 92723 36 36 35 20 chain 69045 chr2 242193529 + 241525500 241526508 MER11A 1151 + 0 1151 24204 45 10 109 135 8 5 30 0 2 41 0 2 19 0 1 54 0 1 90 12 13 12 1 0 116 4 5 128 1 35 10 47 14 20 0 36 13 0 2 8 8 3 24 0 1 100 0 2 9 1 0 22 0 4 40 chain 4111 chr2 242193529 + 241535926 241535974 MER63D 473 + 144 192 90698 48 chain 5156 chr2 242193529 + 241537154 241537213 MER75 514 + 329 388 84879 59 chain 9194 chr2 242193529 + 241537392 241537505 MER75B 242 + 119 231 72133 97 1 0 15 chain 6801 chr2 242193529 + 241537644 241537932 MER47B 469 + 55 405 78319 34 0 7 14 0 1 14 156 226 42 16 0 12 chain 7853 chr2 242193529 + 241584967 241585057 5S 121 + 0 90 75242 90 chain 23078 chr2 242193529 + 241630535 241630797 AluSp 311 + 39 300 52246 72 1 0 189 chain 8667 chr2 242193529 + 241646552 241646757 MER47B 469 + 95 369 73306 28 0 7 8 7 0 8 12 30 18 0 3 7 47 95 70 chain 3253 chr2 242193529 + 241761220 241761256 MER2 342 + 186 222 97448 36 chain 55051 chr2 242193529 + 241790482 241791226 MER4E 760 + 0 752 27854 21 1 2 128 22 25 110 1 5 103 2 0 220 7 6 81 0 1 35 1 3 12 chain 82301 chr2 242193529 + 241791234 241792738 MER4-int 2692 + 1547 2688 21177 103 5 4 26 12 7 95 1 0 99 14 16 242 1 2 45 0 1 85 369 10 5 2 0 23 0 1 4 1 0 100 1 4 47 2 1 30 4 5 23 0 1 135 8 0 11 0 2 6 0 3 5 chain 32656 chr2 242193529 + 241828566 241828918 L1PA3long 6157 + 5805 6157 39800 352 chain 61445 chr2 242193529 + 241829200 241829898 L1PA5 6144 + 5442 6140 26000 698 chain 12225 chr2 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70637 71493 L1PA13 3608 + 2739 3548 27751 44 0 1 287 0 3 30 4 8 20 1 0 28 1 0 95 30 7 11 2 0 63 1 0 26 1 0 29 1 0 5 2 0 44 5 3 5 2 0 13 6 5 24 5 2 12 5 0 14 1 0 6 7 1 10 4 1 12 chain 50885 chr20 64444167 + 98872 99516 L1P3 4156 + 2430 3083 29245 87 0 2 100 12 13 71 0 4 55 0 1 105 4 5 210 chain 46548 chr20 64444167 + 127787 128395 L1PA8 5853 + 5242 5853 30824 10 0 1 64 0 1 246 1 0 45 2 0 69 2 1 21 10 13 16 9 12 18 3 2 92 chain 556002 chr20 64444167 + 129964 135977 L1PA2 6032 + 0 6016 359 60 0 5 9 1 2 84 6 0 2883 0 1 1668 0 1 93 0 1 1209 chain 37393 chr20 64444167 + 161118 161533 L1PA2 6032 + 4098 4513 36480 415 chain 137560 chr20 64444167 + 161534 163033 L1PA2 6032 + 4513 6016 13302 293 0 1 1009 0 3 197 chain 31672 chr20 64444167 + 172771 173218 LTR7 482 + 0 477 40605 86 0 50 22 51 0 72 0 31 216 chain 241624 chr20 64444167 + 173226 176275 HERVH-int 3825 + 0 3825 8438 157 0 1 4 1 0 11 5 9 89 9 11 51 4 3 32 0 1 4 2 1 77 1 120 6 1 0 22 0 151 29 1 0 123 0 1 315 8 0 5 7 0 91 0 26 92 11 1 37 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2940824 MER58B 340 + 140 273 97785 25 67 81 27 chain 4012 chr20 64444167 + 3048208 3048254 MER58A 224 + 37 83 91367 46 chain 28913 chr20 64444167 + 3057232 3057539 AluYa5 310 + 4 310 43464 128 1 0 178 chain 49952 chr20 64444167 + 3063304 3063845 SVA_B 1603 + 1055 1596 29585 541 chain 148161 chr20 64444167 + 3124237 3126524 SVA_A 1864 + 19 1864 12473 117 0 96 234 37 0 111 1 3 33 3 0 229 306 0 45 1 0 63 2 0 74 41 0 37 2 0 37 2 0 45 1 0 23 3 0 42 2 0 71 80 0 48 65 0 81 0 2 56 0 3 395 chain 8631 chr20 64444167 + 3125049 3125251 SVA_A 1864 + 849 897 35591 36 154 0 12 chain 8358 chr20 64444167 + 3125086 3125239 SVA_A 1864 + 885 959 37545 30 39 0 29 40 0 15 chain 4128 chr20 64444167 + 3125251 3125308 SVA_A 1864 + 600 655 29235 53 2 0 2 chain 1896 chr20 64444167 + 3125495 3125528 SVA_A 1864 + 1245 1278 39565 33 chain 5359 chr20 64444167 + 3125802 3125876 SVA_A 1864 + 1058 1132 29235 74 chain 1955 chr20 64444167 + 3125927 3125954 SVA_A 1864 + 1179 1206 29235 27 chain 5130 chr20 64444167 + 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5380980 5381389 L1HS 6032 + 5615 6024 36046 409 chain 106358 chr20 64444167 + 5394644 5395897 L1PA7 6471 + 4532 5785 17512 9 0 1 942 1 0 138 2 0 85 5 7 71 chain 3829 chr20 64444167 + 5401406 5401446 LTR33 499 + 453 493 92654 40 chain 8474 chr20 64444167 + 5413049 5413192 MLT2B4 540 + 0 146 73739 90 27 30 26 chain 22652 chr20 64444167 + 5413192 5413566 THE1D 372 + 0 372 52896 15 0 2 15 1 0 24 11 2 10 25 26 34 0 4 52 14 16 25 1 0 147 chain 67792 chr20 64444167 + 5440890 5441809 L1PA10 4194 + 2706 3620 24497 257 4 3 207 13 13 16 14 15 184 2 1 207 4 0 11 chain 158121 chr20 64444167 + 5452326 5454164 SVA_A 1864 + 28 1854 11866 414 1 2 90 0 3 79 2 0 37 2 0 150 2 0 82 1 0 28 2 0 37 2 0 195 1 0 100 2 0 37 2 0 572 chain 226588 chr20 64444167 + 5514561 5519032 L1PA5 6144 + 3558 6144 8850 513 1886 0 25 2 0 1714 0 1 193 0 2 138 chain 28388 chr20 64444167 + 5635082 5635517 MER41A 554 + 0 389 44287 54 1 2 37 0 1 238 17 11 13 44 2 31 chain 49003 chr20 64444167 + 5651662 5652312 MER4A 717 + 35 680 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7333893 MSTB1 431 + 294 414 74242 27 12 13 80 chain 20141 chr20 64444167 + 7363601 7363944 THE1B 368 + 0 368 56204 40 32 47 81 2 0 28 1 0 5 29 42 125 chain 18404 chr20 64444167 + 7365506 7365850 THE1B 368 + 0 368 58238 44 5 20 43 6 3 65 1 0 15 0 1 5 1 0 5 64 77 90 chain 4020 chr20 64444167 + 7598387 7598531 L1M1 2793 + 729 865 91305 11 2 0 4 2 0 21 16 11 9 0 1 16 37 37 26 chain 76782 chr20 64444167 + 7662536 7663382 L1PA3long 6157 + 5305 6155 22377 124 0 1 66 0 3 656 chain 20542 chr20 64444167 + 7678072 7678318 L1PA5 6144 + 5895 6143 55728 205 0 2 41 chain 8466 chr20 64444167 + 7715529 7715634 MER85 139 + 0 115 73762 90 0 10 15 chain 6712 chr20 64444167 + 7716623 7716742 L1MB1 2102 + 1947 2061 78604 59 24 20 12 1 0 23 chain 100310 chr20 64444167 + 7717304 7718408 L1PA3long 6157 + 5049 6157 18263 764 0 4 340 chain 23187 chr20 64444167 + 7745790 7746040 L1HS 6032 + 5778 6028 52098 250 chain 23672 chr20 64444167 + 7777247 7777617 THE1B 368 + 0 368 51326 22 0 1 79 8 2 65 1 0 22 44 52 26 4 0 99 chain 4941 chr20 64444167 + 7779448 7779508 MSTA 426 + 355 415 85927 60 chain 11216 chr20 64444167 + 7785118 7785254 L1P5 443 + 302 438 68220 136 chain 10478 chr20 64444167 + 7785615 7785906 L1PB1 5432 + 5114 5404 69453 24 1 0 9 16 11 11 4 32 19 2 1 16 5 4 30 14 12 13 3 0 17 30 19 14 2 0 23 2 0 22 1 0 13 chain 3259 chr20 64444167 + 7898598 7898639 MER3 215 + 12 53 97380 41 chain 17828 chr20 64444167 + 7932025 7932277 THE1D 372 + 78 333 58850 89 23 26 140 chain 83032 chr20 64444167 + 7956199 7957162 LTR5_Hs 974 + 0 969 21010 211 0 1 612 0 6 40 1 0 99 chain 23170 chr20 64444167 + 8021868 8022239 THE1B 368 + 0 368 52120 13 2 0 19 5 10 130 7 6 22 4 0 91 33 32 45 chain 10807 chr20 64444167 + 8034442 8034581 L1MA5 2750 + 2486 2630 68840 68 0 7 17 2 0 52 chain 14311 chr20 64444167 + 8319845 8320006 L1PA4 6152 + 5990 6151 63179 161 chain 8406 chr20 64444167 + 8387830 8387942 L1MB3 1562 + 1438 1549 73885 86 1 0 25 chain 65899 chr20 64444167 + 8445925 8446674 L1PA5 6144 + 3499 4249 24978 176 1 0 536 0 2 36 chain 4384 chr20 64444167 + 8460920 8460973 MER3 215 + 0 53 88973 53 chain 73303 chr20 64444167 + 8465682 8466483 L1PA3long 6157 + 5355 6157 23261 652 0 1 149 chain 10532 chr20 64444167 + 8549030 8549163 L1PA8 5853 + 5722 5853 69358 18 2 1 19 1 0 93 chain 24541 chr20 64444167 + 8549985 8550273 THE1C-int 1605 + 1311 1599 49959 288 chain 160660 chr20 64444167 + 8563559 8565480 L1PA7 6471 + 4522 6461 11707 167 0 1 393 5 6 76 0 9 127 1 2 318 1 0 82 1 0 605 7 0 7 8 15 107 0 8 16 chain 139535 chr20 64444167 + 8643756 8645322 SVA_D 2077 + 0 2077 13135 20 4 0 864 6 504 13 5 1 10 0 1 316 0 10 184 0 10 144 chain 16494 chr20 64444167 + 8733606 8733784 L1PA3long 6157 + 5964 6142 60387 178 chain 24881 chr20 64444167 + 8752992 8753308 MER1A 529 + 143 456 49469 249 3 0 64 chain 20565 chr20 64444167 + 8761936 8762221 AluSp 311 + 10 293 55687 38 7 5 70 1 0 12 6 7 151 chain 4937 chr20 64444167 + 8823460 8823520 MER2 342 + 267 327 85949 60 chain 31221 chr20 64444167 + 8973158 8973538 MER41A 554 + 0 385 40952 93 0 1 70 0 2 189 0 2 28 chain 4540 chr20 64444167 + 8999946 8999996 MER50 708 + 0 50 88105 50 chain 18202 chr20 64444167 + 9025828 9026085 LTR8 732 + 11 285 58462 4 0 1 16 0 9 62 4 5 43 1 7 127 chain 15761 chr20 64444167 + 9042513 9042780 L1PB2 3958 + 3587 3836 61336 26 20 6 62 2 1 64 13 11 13 6 5 61 chain 26428 chr20 64444167 + 9151353 9151707 THE1A 353 + 0 353 47086 35 4 5 68 3 2 123 2 1 119 chain 124514 chr20 64444167 + 9151707 9153283 THE1A-int 1579 + 0 1579 14778 474 0 2 460 4 3 37 0 3 130 9 5 263 4 6 94 0 1 101 chain 6521 chr20 64444167 + 9197362 9197444 MER33 330 + 70 151 79262 10 1 0 71 chain 3362 chr20 64444167 + 9246313 9246350 MADE1 96 - 59 96 96461 37 chain 6465 chr20 64444167 + 9263411 9263493 MER5A1 166 + 0 82 79466 82 chain 101953 chr20 64444167 + 9295880 9297019 L1PA4 6152 + 5013 6152 18070 424 1 0 102 0 1 612 chain 4216 chr20 64444167 + 9407133 9407272 MER5A 189 + 38 173 90029 6 6 0 17 35 40 33 17 14 25 chain 13812 chr20 64444167 + 9435987 9436216 Tigger4b 360 + 43 297 63862 32 41 64 57 0 2 99 chain 9837 chr20 64444167 + 9448506 9448722 MER30 238 + 0 227 70744 15 30 26 52 0 3 7 10 0 15 28 50 59 chain 527202 chr20 64444167 + 9461287 9467433 L1PA6 6164 + 0 6160 1947 381 0 2 184 1 0 220 0 17 1058 0 1 462 12 0 284 0 1 696 1 0 449 4 0 179 1 4 1178 0 2 194 0 4 134 6 7 539 9 10 154 chain 3791 chr20 64444167 + 9492270 9492336 MER58B 340 + 139 206 92913 36 10 11 20 chain 5740 chr20 64444167 + 9504541 9504634 MER33 330 + 161 254 82178 15 4 6 65 2 0 7 chain 36443 chr20 64444167 + 9536581 9537052 L1PA7 6471 + 5974 6461 37109 9 0 15 153 0 1 155 15 15 139 chain 124526 chr20 64444167 + 9714646 9716040 L1PA5 6144 + 4732 6128 14777 51 0 2 1343 chain 20674 chr20 64444167 + 9722337 9722615 AluY 311 + 0 285 55530 30 22 29 67 0 1 133 2 1 24 chain 11942 chr20 64444167 + 9726677 9726831 L1PA8 5853 + 5701 5853 66933 39 2 1 19 1 0 93 chain 109638 chr20 64444167 + 9746778 9748023 L1P1 4361 + 3075 4318 17107 1076 1 0 153 2 1 13 chain 11832 chr20 64444167 + 9767837 9767987 L1PA16 3655 + 3323 3473 67145 93 1 0 15 0 1 41 chain 15620 chr20 64444167 + 9777256 9777534 THE1B 368 + 0 292 61505 47 0 1 71 12 13 35 34 48 17 1 0 7 7 6 47 chain 62765 chr20 64444167 + 9793521 9794342 L1PA8 5853 + 5037 5853 25691 57 2 1 149 0 2 318 1 0 44 2 0 70 12 10 6 0 1 45 2 1 19 2 1 92 chain 29890 chr20 64444167 + 9797312 9797651 L1PA5 6144 + 5800 6139 42143 339 chain 298545 chr20 64444167 + 9858428 9861663 L1PA2 6032 + 2797 6032 6873 3076 0 7 2 7 0 150 chain 34063 chr20 64444167 + 9873513 9873978 LTR10F 562 + 0 562 38660 124 2 117 40 21 3 278 chain 82868 chr20 64444167 + 9936914 9938065 L1PB1 5432 + 1730 2891 21050 417 0 1 93 11 11 199 0 1 7 2 1 39 1 3 22 0 1 51 6 9 174 37 43 39 4 1 49 chain 22660 chr20 64444167 + 9960589 9960871 L1PA7 6471 + 6182 6465 52884 114 1 2 4 1 0 13 0 1 149 chain 4936 chr20 64444167 + 9971725 9971802 MLT1A0 366 + 286 364 85976 53 8 9 16 chain 13906 chr20 64444167 + 9998262 9998413 L1PA3long 6157 + 6004 6155 63730 151 chain 120646 chr20 64444167 + 10031498 10032925 LTR12C 1709 + 0 1709 15419 424 3 4 31 0 1 27 0 1 162 0 278 184 1 0 5 3 1 106 0 4 481 chain 10748 chr20 64444167 + 10058107 10058232 Tigger2b_Pri 1066 + 301 426 68959 125 chain 20236 chr20 64444167 + 10068699 10068984 L1MA2 4263 + 3829 4105 56093 127 11 9 93 7 0 47 chain 15852 chr20 64444167 + 10136587 10136804 MER47A 366 + 93 318 61227 76 2 4 116 4 10 19 chain 510722 chr20 64444167 + 10159067 10165547 L1PA6 6164 + 0 6160 2735 147 5 6 296 8 0 120 1 0 135 0 1 86 0 17 278 0 3 166 0 1 141 0 1 203 2 0 362 0 1 146 5 0 115 0 2 98 21 0 20 0 10 873 0 6 541 0 3 475 331 0 390 1 0 751 1 3 61 0 1 701 chain 24851 chr20 64444167 + 10257440 10257734 AluSp 311 + 7 305 49515 19 0 3 141 0 1 134 chain 100999 chr20 64444167 + 10287063 10288169 L1PA3long 6157 + 5050 6157 18185 68 0 1 1038 chain 4641 chr20 64444167 + 10357091 10357150 Ricksha_c 1012 + 94 152 87594 54 1 0 4 chain 35245 chr20 64444167 + 10358833 10359248 L1PA7 6471 + 6053 6466 37868 171 1 0 97 0 1 136 2 0 8 chain 101284 chr20 64444167 + 10363261 10364537 HSMAR1 1287 + 1 1287 18154 238 4 0 240 1 9 89 8 13 23 0 3 128 1 0 408 2 1 134 chain 6029 chr20 64444167 + 10416808 10416968 MER58A 224 + 32 193 80971 64 71 72 25 chain 14712 chr20 64444167 + 10704012 10704190 MSTA 426 + 228 408 62659 141 0 1 25 0 1 12 chain 9179 chr20 64444167 + 10774462 10774672 L1MA9 1812 + 48 255 72163 20 2 0 38 75 74 75 chain 19684 chr20 64444167 + 10792744 10793073 THE1B 368 + 0 339 56803 44 41 49 18 5 6 55 1 0 28 1 0 9 1 5 26 1 0 99 chain 253892 chr20 64444167 + 10819436 10822465 L1PA7 6471 + 3437 6466 8137 66 2 0 20 5 0 485 0 1 659 0 4 685 1 0 263 0 4 74 0 2 758 3 0 8 chain 9669 chr20 64444167 + 10914914 10915074 L1PB4 2604 + 2387 2552 71119 19 0 1 67 28 32 46 chain 309558 chr20 64444167 + 10929666 10933476 L1PA7 6471 + 2656 6469 6621 37 8 2 807 0 1 20 1 0 313 3 0 182 5 3 408 0 17 508 0 1 669 2 0 72 0 1 6 0 1 40 8 6 59 0 3 301 0 1 151 0 1 40 8 4 13 5 0 133 0 2 11 chain 112250 chr20 64444167 + 11088240 11089587 L1PA7 6471 + 5105 6467 16784 314 0 9 193 11 14 74 5 6 416 0 1 86 0 1 248 chain 25332 chr20 64444167 + 11181122 11181490 THE1B 368 + 0 368 48743 14 6 5 84 19 20 46 6 5 81 0 1 112 chain 8479 chr20 64444167 + 11213226 11213355 MER5A1 166 + 0 130 73722 39 1 0 4 0 1 31 9 10 45 chain 49986 chr20 64444167 + 11256774 11257602 L1PB 1623 + 775 1575 29563 135 4 5 76 16 19 169 0 1 93 20 17 10 2 0 146 1 0 7 2 1 29 95 69 23 chain 5417 chr20 64444167 + 11301012 11301096 L1MB8 1703 + 1493 1577 83615 47 0 1 4 8 7 25 chain 8559 chr20 64444167 + 11410721 11410827 LTR54 533 + 0 107 73543 71 0 1 35 chain 3531 chr20 64444167 + 11481756 11481952 L1MA3 4352 + 4137 4325 95007 21 113 108 16 8 6 28 1 0 9 chain 79268 chr20 64444167 + 11506144 11507781 L1PB2 3958 + 2494 3748 21791 273 370 0 85 2 0 72 1 0 11 46 45 21 0 14 66 1 0 37 42 43 98 14 0 48 2 0 56 1 0 13 10 6 25 0 4 17 1 2 10 1 0 11 4 0 94 1 0 73 1 0 44 17 17 69 chain 23427 chr20 64444167 + 11506425 11506783 THE1D 372 + 7 372 51711 100 0 1 52 0 3 6 52 55 148 chain 29744 chr20 64444167 + 11572278 11572692 L1PA8 5853 + 5437 5853 42317 127 1 0 6 0 9 31 2 0 68 2 1 9 1 2 5 4 0 5 0 2 38 2 1 19 1 0 93 chain 39275 chr20 64444167 + 11607607 11608140 MER41A 554 + 0 554 35167 120 11 22 255 1 0 30 1 2 35 0 10 80 chain 566883 chr20 64444167 + 11632779 11638800 L1HS 6032 + 4 6026 44 907 0 1 5114 chain 4754 chr20 64444167 + 11647347 11647432 MER52D 1964 + 1113 1196 86938 38 23 21 24 chain 8255 chr20 64444167 + 11657542 11657953 L1MA9 1812 + 1359 1710 74272 29 1 0 27 3 0 6 1 0 36 1 0 16 257 204 28 1 0 5 chain 5602 chr20 64444167 + 11673893 11673960 MLT2C1 407 + 0 67 82801 67 chain 31241 chr20 64444167 + 11708133 11708602 LTR2B 499 + 8 499 40938 5 0 1 57 1 0 39 0 7 14 55 67 94 0 2 8 0 2 13 1 0 182 chain 284361 chr20 64444167 + 11728798 11732751 L1PA10 4194 + 271 4148 7307 16 1 0 7 57 31 10 10 8 11 1 0 9 56 30 7 0 9 5 0 2 68 2 0 343 0 7 84 14 15 229 7 6 200 0 1 47 0 1 26 2 1 9 3 4 189 0 2 440 1 0 79 23 5 423 0 3 25 0 2 94 0 1 23 0 1 85 1 0 134 30 3 80 0 1 315 0 1 715 1 0 32 7 6 32 chain 80745 chr20 64444167 + 11763787 11764694 L1PA5 6144 + 3959 4870 21483 382 0 4 525 chain 8660 chr20 64444167 + 11777547 11777654 MER5A1 166 + 27 134 73327 107 chain 3167 chr20 64444167 + 11882764 11882800 MER5B 177 + 138 174 98223 36 chain 2601 chr20 64444167 + 11986459 11986486 LTR16C 481 + 439 466 102993 27 chain 3177 chr20 64444167 + 11999501 11999575 MADE1 96 - 5 96 98123 33 11 28 30 chain 2461 chr20 64444167 + 12061957 12061993 MLT1C 463 + 10 47 103852 15 1 2 20 chain 80968 chr20 64444167 + 12147202 12148247 L1PA11 4918 + 2320 3376 21441 224 2 0 394 5 19 202 18 17 200 chain 26193 chr20 64444167 + 12240589 12240915 L1PA7 6471 + 6142 6462 47434 166 0 1 147 7 0 6 chain 105293 chr20 64444167 + 12369393 12370569 L1PA3long 6157 + 4979 6157 17647 380 0 1 565 0 1 231 chain 114648 chr20 64444167 + 12449607 12451496 THE1B-int 1605 + 9 1605 16442 26 0 2 395 7 32 34 336 22 139 1 0 103 13 1 19 15 19 473 9 10 102 0 1 100 7 8 110 chain 246501 chr20 64444167 + 12477508 12480318 L1PA5 6144 + 2538 5342 8316 824 12 8 244 1 0 86 7 6 1505 0 1 77 1 0 53 chain 465046 chr20 64444167 + 12491624 12496986 L1PA5 6144 + 3 5377 3989 117 0 14 408 1 0 361 0 1 389 0 1 673 5 1 209 9 11 372 0 2 798 5 0 302 0 1 431 0 1 1282 chain 241628 chr20 64444167 + 12535843 12539452 L1PBa 3878 + 216 3748 8437 17 7 5 110 0 2 42 1 2 129 1 0 88 13 11 77 0 3 173 3 0 32 1 2 70 89 91 5 2 0 124 32 33 215 0 2 173 2 0 268 1 6 12 9 8 131 0 1 156 70 0 316 7 8 109 6 0 70 0 1 333 24 23 43 0 3 5 25 12 81 1 0 5 14 7 104 4 5 76 0 1 12 10 15 58 0 1 106 10 16 101 2 1 21 2 0 11 chain 29131 chr20 64444167 + 12558504 12558816 AluYa5 310 + 0 309 43149 97 3 0 212 chain 133484 chr20 64444167 + 12561185 12562771 L1PA7 6471 + 4862 6459 13693 759 5 8 690 1 2 72 0 7 59 chain 549238 chr20 64444167 + 12582507 12588531 L1PA2 6032 + 1 6031 796 2643 0 5 3194 0 1 187 chain 4138 chr20 64444167 + 12612520 12612585 MER58A 224 + 26 83 90522 26 8 0 31 chain 181203 chr20 64444167 + 12633976 12635948 L1PA2 6032 + 4053 6025 10542 1972 chain 6354 chr20 64444167 + 12646193 12646268 MSTC 436 + 30 105 79824 75 chain 39748 chr20 64444167 + 12655095 12655610 L1PA8 5853 + 5343 5853 34856 221 1 0 44 2 0 16 0 1 52 7 6 57 2 1 19 1 0 93 chain 501268 chr20 64444167 + 12662682 12668246 L1PA3long 6157 + 10 6149 3087 84 0 526 570 0 3 2454 0 39 1315 0 1 308 0 4 611 0 1 168 0 1 54 chain 3969 chr20 64444167 + 12706451 12706502 MADE1 96 + 46 96 91646 15 1 0 35 chain 33725 chr20 64444167 + 12752945 12753392 LTR7 482 + 0 482 38901 95 2 1 128 1 2 25 1 2 5 0 32 129 12 14 49 chain 39425 chr20 64444167 + 12753819 12754274 LTR7 482 + 0 482 35057 52 4 0 183 0 31 216 chain 294152 chr20 64444167 + 12754276 12757917 HERVH-int 3825 + 0 3825 7005 243 0 5 128 0 4 114 40 0 36 0 1 8 9 3 28 1 0 10 1 0 7 2 1 17 0 13 13 3 0 7 21 0 10 22 1 42 2 22 16 2 1 41 9 8 531 2 0 375 4 31 732 0 1 671 9 219 193 0 1 198 3 2 5 0 1 86 chain 2116 chr20 64444167 + 12754761 12754794 HERVH-int 3825 + 515 543 104288 17 5 0 11 chain 40788 chr20 64444167 + 12759179 12759634 LTR7 482 + 0 482 34105 52 4 0 180 0 31 219 chain 5432 chr20 64444167 + 12811161 12811253 L1MA4A 3247 + 600 692 83546 26 14 13 5 0 1 47 chain 44802 chr20 64444167 + 12857589 12858349 LTR12D 1347 + 405 1347 31701 29 0 150 109 88 15 110 27 41 13 11 12 36 7 9 65 20 108 245 chain 28716 chr20 64444167 + 12890969 12891323 THE1A 353 + 0 353 43765 109 2 1 243 chain 41478 chr20 64444167 + 12922537 12923104 MSTA-int 1630 + 1040 1612 33687 16 0 1 287 4 6 46 26 29 91 5 4 92 chain 45834 chr20 64444167 + 12926358 12926922 LTR19B 566 + 0 566 31137 302 1 0 132 5 6 53 0 5 16 3 0 52 chain 162189 chr20 64444167 + 12942751 12945188 L1PB1 5432 + 3018 5420 11598 62 5 6 146 9 12 331 9 10 144 16 10 31 12 12 107 5 6 68 13 13 206 0 1 252 0 1 109 0 1 75 3 0 93 1 0 90 3 11 288 5 0 9 2 0 5 2 0 3 1 0 18 37 29 53 8 7 9 1 0 32 100 81 21 1 0 20 2 1 8 1 0 21 chain 12222 chr20 64444167 + 12960123 12960446 L1PB1 5432 + 5114 5422 66433 20 1 0 13 1 0 11 7 3 6 2 0 53 25 20 41 1 0 14 58 60 15 6 5 12 8 7 10 1 0 18 chain 13814 chr20 64444167 + 13017550 13017734 MER30 238 + 36 238 63856 72 4 22 108 chain 12435 chr20 64444167 + 13048044 13048205 L1P3 4156 + 2667 2825 66091 12 3 4 113 4 0 29 chain 154132 chr20 64444167 + 13052075 13053986 L1P3 4156 + 0 1898 12103 251 2 1 68 1 0 82 18 0 371 2 1 335 8 9 116 1 0 124 2 0 5 0 9 185 0 1 340 chain 46936 chr20 64444167 + 13145147 13145891 L1PREC2 3366 + 2227 2951 30684 56 0 4 18 3 1 39 0 1 102 8 9 260 4 2 32 3 1 54 2 1 43 1 0 4 68 52 14 9 7 24 chain 29424 chr20 64444167 + 13189189 13189640 L1PA17 2846 + 2244 2682 42704 257 25 20 14 1 0 37 4 2 18 2 0 8 1 0 31 2 1 18 8 7 25 chain 6531 chr20 64444167 + 13191942 13192030 MSTD 398 + 292 381 79227 31 1 2 56 chain 4128 chr20 64444167 + 13195135 13195183 MADE1 96 + 48 96 90597 48 chain 4534 chr20 64444167 + 13284026 13284132 MIRb 242 + 69 174 88140 44 32 31 19 0 1 4 1 0 6 chain 128505 chr20 64444167 + 13326711 13328454 L1PA11 4918 + 2918 4629 14219 261 0 1 187 0 1 140 0 1 4 1 0 15 22 27 66 0 1 31 0 1 6 3 0 35 0 1 239 0 1 392 7 0 65 2 1 81 2 0 12 2 1 16 50 37 13 1 0 13 2 0 11 31 21 7 2 0 4 1 0 19 chain 40669 chr20 64444167 + 13357879 13358330 LTR7 482 + 0 482 34172 230 0 31 221 chain 207790 chr20 64444167 + 13358332 13360987 HERVH-int 3825 + 0 3825 9430 212 0 11 142 66 0 167 68 0 38 1 0 10 1 0 24 29 0 8 11 48 33 0 1056 257 0 4 438 0 1 122 12 25 524 8 218 373 0 3 111 chain 40007 chr20 64444167 + 13362238 13362689 LTR7 482 + 0 482 34651 266 0 31 185 chain 168579 chr20 64444167 + 13437013 13439031 L1PA4 6152 + 3643 5516 11177 992 145 0 881 chain 28934 chr20 64444167 + 13456950 13457276 L1PA6 6164 + 5834 6160 43427 326 chain 143419 chr20 64444167 + 13471703 13473488 L1PA6 6164 + 0 6156 12818 52 6 7 175 0 4364 162 0 8 893 2 1 13 1 0 481 chain 5280 chr20 64444167 + 13478147 13478212 HSMAR1 1287 + 1218 1283 84285 65 chain 13161 chr20 64444167 + 13478374 13478537 L1PB4 2604 + 2389 2552 64838 163 chain 88878 chr20 64444167 + 13483729 13485135 L1PA7 6471 + 5381 6465 19876 240 1 0 79 12 14 389 323 0 362 chain 21602 chr20 64444167 + 13518791 13519178 L1PA16 3655 + 3205 3588 54351 77 26 25 50 11 12 23 42 41 144 3 0 11 chain 128255 chr20 64444167 + 13519385 13520820 L1PA4 6152 + 3751 5187 14249 6 0 1 1429 chain 5147 chr20 64444167 + 13553245 13553354 Tigger6a 1079 + 933 1050 84924 46 27 34 25 1 2 10 chain 5244 chr20 64444167 + 13564627 13564718 L1MB3 1562 + 128 221 84479 13 5 0 6 0 5 9 5 7 53 chain 5820 chr20 64444167 + 13573232 13573348 MLT1A0 366 + 25 135 81827 8 1 0 14 26 22 19 1 0 47 chain 527928 chr20 64444167 + 13593237 13599687 L1PA6 6164 + 0 6162 1919 210 12 18 750 1 0 112 0 3 138 1 2 861 0 1 230 0 1 538 305 0 271 1 0 55 0 1 348 0 1 414 0 1 693 0 1 30 1 0 512 1 0 125 0 7 465 0 1 365 3 0 8 chain 7109 chr20 64444167 + 13601296 13601514 L1MC3 1789 + 1186 1369 77227 17 76 60 48 3 0 10 25 9 39 chain 13048 chr20 64444167 + 13674054 13674262 THE1B 368 + 151 368 65030 21 2 1 26 34 44 125 chain 95770 chr20 64444167 + 13705556 13706629 L1PA6 6164 + 3973 5046 18800 1073 chain 22273 chr20 64444167 + 13706629 13706909 L1PA6 6164 + 5049 5312 53444 195 23 6 62 chain 73913 chr20 64444167 + 13706909 13707765 L1PA6 6164 + 5316 6162 23117 736 1 0 100 9 0 10 chain 104367 chr20 64444167 + 13760180 13761387 SVA_D 2077 + 460 2069 17775 430 0 396 28 0 1 24 1 2 14 5 6 28 16 19 46 0 1 78 2 1 535 chain 27311 chr20 64444167 + 13872257 13872604 THE1C 375 + 32 375 45813 93 8 5 220 1 0 25 chain 81114 chr20 64444167 + 13951632 13952730 MER61-int 3695 + 2029 3145 21409 48 0 23 30 0 1 32 0 2 61 11 15 37 17 0 328 1 2 5 2 0 10 0 1 97 6 8 32 0 5 97 1 0 37 1 0 38 2 1 92 0 1 113 chain 95028 chr20 64444167 + 13958326 13959882 HSMAR1 1287 + 8 1287 18902 58 4 3 62 1 9 42 0 1 147 299 0 218 53 66 260 0 1 412 chain 3126 chr20 64444167 + 13986799 13986837 MADE1 96 + 1 39 98567 38 chain 4340 chr20 64444167 + 14080012 14080086 MER31-int 1156 + 443 518 89234 43 8 9 23 chain 54962 chr20 64444167 + 14120240 14121005 L1PA8A 6298 + 5546 6279 27887 57 0 2 363 59 8 13 0 13 112 1 4 60 2 3 98 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14516750 14517684 L1PA7 6471 + 5519 6457 21469 102 1 4 506 0 1 325 chain 3097 chr20 64444167 + 14601134 14601172 ORSL 269 + 0 38 98809 38 chain 150263 chr20 64444167 + 14675056 14676918 L1P2 5180 + 1494 3345 12330 697 0 4 11 0 2 111 1 0 66 3 1 8 1 5 310 28 1 9 0 10 9 2 1 606 chain 13277 chr20 64444167 + 14686546 14686718 Tigger3a 397 + 143 323 64670 23 1 9 148 chain 526143 chr20 64444167 + 14806162 14812571 L1PA7 6471 + 6 6461 1991 236 6 21 351 0 1 45 1 0 510 10 11 47 0 1 134 0 1 395 2 1 223 0 10 638 3 1 257 0 4 591 1 2 5 2 0 6 1 0 24 3 2 26 0 4 185 8 5 94 1 0 167 9 8 219 1 0 5 0 1 327 1 3 387 0 1 347 0 1 31 0 8 12 1 0 268 0 2 221 0 1 305 1 8 302 chain 19745 chr20 64444167 + 14983413 14983735 THE1B 368 + 0 344 56733 12 3 1 31 6 21 107 2 1 25 35 45 101 chain 10765 chr20 64444167 + 15021731 15021923 L1MC2 1988 + 1725 1919 68928 4 0 1 43 34 33 41 4 0 17 0 6 49 chain 6366 chr20 64444167 + 15022851 15022929 U6 107 + 0 78 79789 78 chain 3202 chr20 64444167 + 15131346 15131380 MADE1 96 + 57 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126 1 0 22 11 2 163 1 0 197 20 10 193 6 7 71 2 1 61 2 1 20 1 0 61 2 0 14 1 0 19 4 0 8 30 27 11 1 0 13 2 0 11 chain 477735 chr20 64444167 + 22114636 22120452 L1PA4 6152 + 6 5519 3680 923 0 1 16 0 4 102 8 9 139 0 1 293 0 1 688 0 1 1332 1 0 1129 316 0 660 0 4 165 0 1 44 chain 84750 chr20 64444167 + 22131755 22132702 L1PA4 6152 + 2569 3515 20673 602 1 0 344 chain 180673 chr20 64444167 + 22132702 22134708 L1PA4 6152 + 3516 5522 10559 2006 chain 121524 chr20 64444167 + 22192318 22194106 L1PA13 3608 + 169 1988 15257 8 3 0 24 31 20 10 0 1 54 8 6 124 1 0 12 2 1 16 2 0 9 14 9 18 1 0 17 22 18 8 0 14 83 11 9 65 1 11 27 9 38 434 1 15 181 3 4 220 7 0 331 0 4 22 3 0 6 chain 511453 chr20 64444167 + 22194135 22200268 L1PA6 6164 + 0 6162 2690 343 1 0 28 25 32 97 11 10 293 0 17 262 3 0 8 0 3 359 1 0 1744 7 8 318 0 1 340 1 2 644 1 0 140 3 0 901 0 2 539 0 10 54 3 0 7 chain 57045 chr20 64444167 + 22209855 22210481 L1PA3long 6157 + 5530 6156 27252 626 chain 33165 chr20 64444167 + 22255914 22256288 L1PA5 6144 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151 chain 13123 chr20 64444167 + 22959956 22960111 THE1A-int 1579 + 0 155 64890 155 chain 391039 chr20 64444167 + 22967764 22973182 L1PB1 5432 + 19 5413 5305 27 12 13 215 3 4 128 1 0 137 0 2 7 19 4 94 1 8 737 1 0 7 8 0 156 0 1 139 5 7 7 2 0 292 23 32 75 5 6 96 11 10 6 0 1 147 0 4 119 5 0 237 2 1 104 1 0 9 0 5 62 0 3 224 0 1 132 0 1 172 8 9 270 2 0 150 0 2 80 2 1 100 1 0 558 3 0 40 0 1 7 0 1 33 0 2 29 1 2 25 0 4 337 2 3 10 3 0 25 24 18 9 2 0 53 2 1 16 1 0 12 72 59 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 9 chain 3275 chr20 64444167 + 23029218 23029269 LTR40a 516 + 0 53 97230 23 6 8 22 chain 8024 chr20 64444167 + 23068430 23068568 MER76 683 + 566 683 74832 7 12 0 42 3 0 39 6 0 29 chain 19806 chr20 64444167 + 23139926 23140140 L1PA2 6032 + 5810 6024 56666 214 chain 12987 chr20 64444167 + 23196675 23196842 L1PA16 3655 + 3092 3258 65132 112 2 1 53 chain 23095 chr20 64444167 + 23227902 23228201 MLT2A2 560 + 4 309 52216 272 1 7 26 chain 15694 chr20 64444167 + 23243590 23243757 L1PA2 6032 + 5856 6023 61407 167 chain 138487 chr20 64444167 + 23306381 23307909 L1PA4 6152 + 4606 6135 13220 1227 0 1 301 chain 2913 chr20 64444167 + 23336503 23336536 MER51A 677 + 383 416 100736 33 chain 33408 chr20 64444167 + 23348512 23348951 LTR2 463 + 0 463 39167 130 10 14 16 10 31 4 1 0 59 0 1 139 1 0 69 chain 9565 chr20 64444167 + 23401278 23401410 MER85 139 + 1 138 71339 57 5 0 33 0 10 37 chain 569509 chr20 64444167 + 23426108 23432140 L1HS 6032 + 1 6032 1 2568 1 0 3463 chain 18438 chr20 64444167 + 23460776 23461012 PRIMA4_LTR 623 + 0 259 58185 175 1 24 60 chain 44974 chr20 64444167 + 23466924 23467437 MER9a1 513 + 0 513 31596 513 chain 380889 chr20 64444167 + 23468881 23473419 HERVK9-int 4720 + 36 4704 5465 13 8 5 4 1 0 66 1 0 6 3 2 14 0 1 15 1 0 1784 0 3 54 1 5 42 1 0 1059 8 14 179 0 1 4 12 11 1024 0 96 80 0 28 158 chain 40745 chr20 64444167 + 23514244 23514797 LTR7B 505 + 0 505 34124 199 71 0 28 5 25 5 0 1 150 0 2 95 chain 555609 chr20 64444167 + 23589308 23595311 L1PA2 6032 + 7 6032 378 473 0 1 553 0 3 792 0 1 603 0 1 2229 0 1 352 1 0 840 0 16 160 chain 112839 chr20 64444167 + 23695329 23696763 L1P1 4361 + 2841 4214 16697 265 55 1 90 5 0 72 0 1 233 1 0 171 1 0 476 1 0 64 chain 11951 chr20 64444167 + 23708537 23708673 MER41A 554 + 0 136 66921 136 chain 50420 chr20 64444167 + 23735750 23736380 LTR12_ 688 + 0 680 29405 126 1 50 398 0 1 105 chain 48994 chr20 64444167 + 23742103 23742764 LTR12_ 688 + 0 688 29956 59 0 41 38 24 8 21 7 6 74 1 2 211 0 1 115 0 1 111 chain 122366 chr20 64444167 + 23757249 23758727 L1P1 4361 + 2841 4318 15133 361 1 0 32 1 2 33 0 1 233 0 1 180 1 0 467 1 0 149 7 6 12 chain 17398 chr20 64444167 + 23758763 23758968 L1PA6 6164 + 5944 6149 59358 205 chain 11709 chr20 64444167 + 23771147 23771283 MER41A 554 + 0 136 67385 136 chain 224738 chr20 64444167 + 23789433 23791992 L1PA4 6152 + 969 3528 8900 2559 chain 28918 chr20 64444167 + 23799961 23800268 AluYk11 308 + 0 307 43460 307 chain 56994 chr20 64444167 + 23811592 23812279 LTR12_ 688 + 0 688 27267 574 0 1 113 chain 50715 chr20 64444167 + 23817833 23818495 LTR12_ 688 + 0 688 29307 59 0 41 38 24 8 21 3 2 291 0 1 113 0 1 113 chain 497519 chr20 64444167 + 23835460 23841617 L1PA6 6164 + 0 6156 3221 509 2 1 43 6 7 62 0 1 527 9 1 785 2 1 387 0 2 794 1 0 64 5 6 25 0 1 7 9 8 337 1 3 694 0 1 332 0 1 294 0 1 147 13 13 936 15 17 10 2 0 139 chain 59770 chr20 64444167 + 23848909 23849587 L1PA4 6152 + 5467 6146 26440 435 0 1 243 chain 11504 chr20 64444167 + 23853580 23853716 MER41A 554 + 0 136 67740 136 chain 6160 chr20 64444167 + 23941796 23941868 L1PA4 6152 + 6024 6096 80486 72 chain 5149 chr20 64444167 + 23941869 23941924 L1PA4 6152 + 6096 6151 84909 55 chain 78222 chr20 64444167 + 23982640 23983596 LTR5_Hs 974 + 0 961 22045 198 1 0 261 0 4 196 0 1 116 7 7 21 0 1 156 chain 30828 chr20 64444167 + 24019389 24019811 MLT2A1 477 + 0 465 41286 169 4 1 18 8 8 189 4 0 7 0 50 23 chain 123063 chr20 64444167 + 24019823 24021424 HERVL-int 5654 + 0 5321 15015 69 0 1 579 1 0 130 3 0 5 1 5 608 0 8 11 0 3718 91 15 5 52 1 4 35 chain 38066 chr20 64444167 + 24114801 24115337 MER41A 554 + 0 554 36021 92 0 1 18 16 17 13 0 8 174 0 1 73 8 12 23 2 0 35 1 6 81 chain 2995 chr20 64444167 + 24131649 24131684 LTR24 460 + 417 452 99881 35 chain 40555 chr20 64444167 + 24216402 24217258 L1P3 4156 + 2953 3487 34263 195 334 0 47 0 8 210 1 5 69 chain 4883 chr20 64444167 + 24246636 24246691 MER72 723 + 639 694 86240 55 chain 82581 chr20 64444167 + 24286902 24288316 L1PA11 4918 + 3234 4629 21106 111 0 11 316 0 1 237 0 1 214 3 2 38 8 11 134 0 4 15 2 0 64 2 1 13 2 0 68 2 0 13 1 0 10 0 1 9 4 0 9 8 3 10 14 9 15 1 0 13 60 44 18 chain 54029 chr20 64444167 + 24343946 24344790 L1PA13 3608 + 2656 3482 28217 13 1 0 4 0 1 225 0 1 33 28 30 117 10 12 40 4 1 27 1 0 112 3 1 61 1 0 29 8 6 16 23 11 40 6 7 5 2 0 20 1 0 14 chain 27718 chr20 64444167 + 24377663 24378018 THE1A 353 + 0 353 45293 106 5 4 92 1 0 151 chain 84799 chr20 64444167 + 24415036 24416120 MER11B 1079 + 0 1079 20660 364 0 1 172 0 1 4 6 5 194 10 0 26 0 2 106 0 1 8 4 5 93 0 1 64 4 3 29 chain 446548 chr20 64444167 + 24512163 24517311 L1PA5 6144 + 3 6144 4448 473 0 3 19 0 10 556 0 1 706 0 1 1441 9 948 835 0 7 255 0 11 22 0 4 361 0 17 471 chain 30614 chr20 64444167 + 24571811 24572241 LOR1b 457 + 22 455 41455 14 12 24 85 7 0 72 2 0 238 chain 2971 chr20 64444167 + 24642964 24642997 MADE1 96 + 55 88 100189 33 chain 3419 chr20 64444167 + 24692277 24692320 MER3 215 + 66 109 95905 43 chain 540508 chr20 64444167 + 24900605 24906618 L1PA2 6032 + 3 6032 1308 68 1 2 183 1 0 803 0 10 4940 0 6 17 chain 9518 chr20 64444167 + 24907697 24907988 L1PA11 4918 + 4370 4626 71436 23 2 1 11 6 3 66 2 0 14 7 9 11 4 0 9 8 3 10 13 9 15 1 0 12 22 14 5 1 0 8 1 0 7 18 11 15 chain 55375 chr20 64444167 + 24913839 24914499 PABL_A 660 + 0 660 27752 235 1 0 43 0 1 381 chain 42262 chr20 64444167 + 24919225 24919728 LTR2C 499 + 0 499 33211 42 0 2 5 0 1 390 0 1 7 9 0 14 0 1 36 chain 27054 chr20 64444167 + 24920835 24921706 HERVE-int 4064 + 0 868 6468 811 3 0 57 chain 466402 chr20 64444167 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25730219 L1PA3long 6157 + 4134 6157 10395 5 3 0 221 0 4 924 0 4 807 1 0 58 chain 197978 chr20 64444167 + 25808516 25810807 L1PA3long 6157 + 3860 6157 9776 589 8 3 277 1 0 67 0 2 69 0 9 665 4 5 611 chain 22102 chr20 64444167 + 25883475 25883753 L1PA3long 6157 + 5878 6157 53693 136 1 2 141 chain 149605 chr20 64444167 + 25887815 25890199 L1PA8 5853 + 3748 5848 12379 6 0 1 123 0 1 77 1 0 7 11 26 117 0 2 107 5 3 122 6 2 145 1 2 227 0 13 44 13 15 5 0 2 214 1 3 50 307 0 25 0 1 6 2 1 335 0 1 133 1 0 44 20 18 53 1 0 14 16 15 34 1 0 18 1 0 72 4 1 15 chain 24969 chr20 64444167 + 25955666 25956084 MER57A1 433 + 11 433 49330 89 1 0 172 52 56 23 34 35 47 chain 2578 chr20 64444167 + 26010952 26011073 LTR25 836 + 506 544 103112 25 83 0 13 chain 4537 chr20 64444167 + 26011611 26011663 MER21B 843 + 20 72 88128 52 chain 4346 chr20 64444167 + 26022955 26023005 L1MB8 1703 + 1468 1518 89200 50 chain 126048 chr20 64444167 + 26116905 26118345 L1P1 4361 + 2531 3980 14546 154 1 0 321 0 9 149 0 1 815 chain 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75948 chr20 64444167 + 29804422 29805383 LTR5_Hs 974 + 1 974 22595 457 0 4 412 0 3 19 10 15 63 chain 364544 chr20 64444167 + 29816736 29821069 L1P1 4361 + 1 4341 5739 468 0 4 1228 0 1 321 1 4 1482 4 5 419 1 2 214 2 1 155 1 0 23 2 1 12 chain 26097 chr20 64444167 + 29978125 29978428 L1PA2 6032 + 5657 5959 47579 279 1 0 23 chain 5192 chr20 64444167 + 30030470 30030529 L1PA3long 6157 - 313 372 84720 59 chain 128908 chr20 64444167 + 30155338 30156789 L1PA2 6032 + 4577 6028 14163 1289 1 6 6 5 0 150 chain 9104 chr20 64444167 + 30169037 30169144 THE1A-int 1579 + 1472 1579 72339 107 chain 153684 chr20 64444167 + 30183056 30185459 L1PA8 5853 + 3747 5853 12130 8 0 1 120 0 1 99 5 10 120 0 2 107 7 3 122 2 0 138 10 11 206 11 24 60 7 9 221 0 2 51 309 0 174 0 1 136 2 1 141 0 1 48 1 0 44 2 0 71 1 0 10 1 0 53 2 1 15 4 3 71 4 1 20 chain 81943 chr20 64444167 + 30237992 30238868 L1HS 6032 + 4900 5776 21256 876 chain 28744 chr20 64444167 + 30263592 30263920 L1PA3long 6157 + 5829 6157 43716 328 chain 27140 chr20 64444167 + 30339040 30339410 THE1A 353 + 0 353 46064 110 1 0 180 17 1 62 chain 162985 chr20 64444167 + 30404191 30406523 SVA_D 2077 + 8 2069 11545 534 0 40 290 40 0 44 2 1 16 165 27 74 22 24 144 0 4 164 224 0 501 7 93 105 chain 7338 chr20 64444167 + 30405121 30405248 SVA_D 2077 + 975 1075 42501 55 42 16 6 1 0 23 chain 3179 chr20 64444167 + 30405176 30405218 SVA_D 2077 + 1482 1524 62022 42 chain 5172 chr20 64444167 + 30405688 30405817 SVA_D 2077 + 1069 1198 41552 129 chain 2048 chr20 64444167 + 30405817 30405850 SVA_D 2077 + 1325 1358 47447 33 chain 1191 chr20 64444167 + 30405850 30405880 SVA_D 2077 + 1004 1034 55133 30 chain 3073 chr20 64444167 + 30406617 30406717 LTR40a 516 + 276 413 99072 4 1 0 15 49 87 31 chain 209539 chr20 64444167 + 30407587 30409986 L1PA4 6152 + 2949 5354 9360 211 0 1 191 7 8 1944 0 4 46 chain 208247 chr20 64444167 + 30657877 30660201 L1PA3long 6157 + 3838 6157 9410 1263 6 1 1055 chain 2479 chr20 64444167 + 30672265 30672452 MER4D 903 + 281 319 103720 27 149 0 11 chain 60424 chr20 64444167 + 30699887 30700605 L1PA5 6144 + 5367 6087 26259 435 0 1 189 5 6 89 chain 24423 chr20 64444167 + 30730231 30730523 L1PA5 6144 + 5850 6144 50134 35 0 2 257 chain 323124 chr20 64444167 + 30731925 30735561 L1HS 6032 + 604 4490 6352 342 0 1 161 0 85 202 7 5 1207 0 2 1401 0 164 316 chain 19528 chr20 64444167 + 30751636 30752815 L1PA15 4387 + 3895 4316 56991 38 15 24 60 3 0 5 11 14 28 758 0 40 1 0 26 1 0 55 1 0 12 9 7 13 4 3 33 48 45 18 chain 37192 chr20 64444167 + 30814682 30815134 LTR2 463 + 7 463 36616 54 0 3 317 0 1 81 chain 6075 chr20 64444167 + 30824616 30824737 LTR6A 649 + 527 649 80817 39 17 20 12 1 0 26 6 5 20 chain 82967 chr20 64444167 + 30902359 30903378 LTR5A 1029 + 7 1029 21024 71 0 2 67 1 0 449 1 0 4 12 13 78 0 2 336 chain 95507 chr20 64444167 + 30950552 30951678 L1PA3long 6157 + 5028 6157 18842 498 0 1 313 6 7 56 1 2 252 chain 511337 chr20 64444167 + 30985461 30991461 L1PA3long 6157 + 4 6157 2696 96 0 1 52 0 1 219 0 1 395 10 138 702 0 1 47 0 3 659 0 1 377 1 0 150 0 1 112 0 1 215 0 1 1327 0 4 887 0 1 88 0 4 511 0 3 137 0 1 10 0 2 5 chain 74774 chr20 64444167 + 30992900 30993748 L1PA2 6032 + 5175 6025 22897 832 0 2 16 chain 4198 chr20 64444167 + 31269013 31269076 L1PB1 5432 + 5353 5413 90139 17 1 0 21 1 0 13 1 0 9 chain 6184 chr20 64444167 + 31292894 31292967 MSTC 436 + 0 73 80410 73 chain 164665 chr20 64444167 + 31296324 31298976 L1MA1 4479 + 1486 4150 11440 87 2 3 106 1 2 28 4 31 68 14 17 87 0 4 16 12 11 139 6 4 77 4 0 197 0 1 17 0 3 95 1 4 63 0 1 7 47 0 47 10 0 50 0 1 4 6 93 24 2 0 12 5 6 13 1 0 68 1 0 86 1 0 27 2 0 166 5 4 96 1 0 12 5 0 48 5 0 78 3 0 131 3 0 136 92 72 11 2 0 16 1 0 40 3 4 27 1 0 12 1 0 24 13 12 47 43 39 39 3 4 61 15 14 29 2 0 35 1 0 8 chain 557902 chr20 64444167 + 31332715 31338862 L1PA3long 6157 + 4 6157 250 565 2 6 399 0 2 1461 5 1 134 0 4 114 1 0 480 0 1 1177 1 0 1316 0 1 492 chain 39650 chr20 64444167 + 31351903 31352352 L1PA2 6032 + 5572 6029 34925 6 1 0 231 0 6 31 0 5 168 2 0 10 chain 24553 chr20 64444167 + 31362002 31362548 L1MA8 2339 + 1846 2331 49940 82 4 0 26 3 1 35 6 0 19 1 0 27 5 12 45 7 0 8 32 18 31 11 10 33 10 4 36 2 0 23 1 0 13 48 30 11 6 0 21 chain 11787 chr20 64444167 + 31384195 31384359 L1MA3 4352 + 4119 4277 67237 116 4 0 23 2 0 19 chain 173231 chr20 64444167 + 31426266 31428431 SVA_D 2077 + 12 2073 10942 4 1 0 8 8 0 4 1 0 9 1 0 871 2 0 4 129 0 32 48 17 58 32 0 67 0 3 214 0 98 672 chain 7873 chr20 64444167 + 31427179 31427308 SVA_D 2077 + 1097 1226 40497 129 chain 2136 chr20 64444167 + 31427340 31427375 SVA_D 2077 + 1336 1388 40497 19 1 18 15 chain 17604 chr20 64444167 + 31451404 31451740 MSTA 426 + 7 362 59113 136 10 16 31 85 84 27 1 15 46 chain 4454 chr20 64444167 + 31581099 31581179 U6 107 + 11 94 88584 36 16 19 28 chain 4159 chr20 64444167 + 31663792 31663847 MER39 703 + 371 432 90397 22 0 2 15 0 4 18 chain 14164 chr20 64444167 + 31716004 31716254 MER34C2 569 + 316 557 63362 21 13 23 9 21 0 85 4 0 14 1 6 22 0 1 60 chain 2947 chr20 64444167 + 31760834 31760865 U2 167 + 0 31 100409 31 chain 4854 chr20 64444167 + 31901253 31901370 U1 164 + 0 118 86399 19 44 45 54 chain 69743 chr20 64444167 + 31921203 31921981 L1PA5 6144 + 5364 6142 24053 778 chain 3490 chr20 64444167 + 32005092 32005155 MLT1J 494 + 93 157 95313 36 14 15 13 chain 5957 chr20 64444167 + 32008375 32008437 5S 121 + 28 90 81241 62 chain 13989 chr20 64444167 + 32039745 32039936 L1PA8 5853 + 5666 5853 63611 13 1 0 14 1 0 47 2 1 19 2 1 92 chain 5448 chr20 64444167 + 32169398 32169481 MSTB1 431 + 348 431 83466 19 2 1 33 1 2 28 chain 130044 chr20 64444167 + 32175371 32177598 SVA_F 1814 + 11 1471 14035 844 346 43 49 0 15 206 479 0 303 chain 20552 chr20 64444167 + 32176215 32176561 SVA_F 1814 + 905 1089 40711 42 0 15 85 177 0 42 chain 6156 chr20 64444167 + 32176342 32176411 SVA_F 1814 + 1223 1291 59254 51 1 0 17 chain 2550 chr20 64444167 + 32176435 32176478 SVA_F 1814 + 1139 1182 74869 43 chain 4167 chr20 64444167 + 32176848 32176912 SVA_F 1814 + 664 768 90339 41 6 46 17 chain 10158 chr20 64444167 + 32176962 32177067 SVA_F 1814 + 962 1067 56478 105 chain 14607 chr20 64444167 + 32177067 32177295 SVA_F 1814 + 827 992 54634 29 1 0 31 0 1 56 81 18 30 chain 2199 chr20 64444167 + 32177184 32177207 SVA_F 1814 + 1135 1158 91342 23 chain 3022 chr20 64444167 + 32177213 32177265 SVA_F 1814 + 1037 1089 58592 52 chain 12521 chr20 64444167 + 32302907 32303113 MER30 238 + 1 238 65947 15 0 18 74 4 0 6 16 36 4 0 1 19 5 0 45 0 1 18 chain 27231 chr20 64444167 + 32311435 32311729 AluYa5 310 + 18 310 45928 105 2 0 187 chain 24295 chr20 64444167 + 32344040 32344328 AluY 311 + 0 296 50334 47 0 6 79 0 1 5 1 2 156 chain 7595 chr20 64444167 + 32351215 32351298 LTR12F 595 + 402 485 75881 83 chain 27352 chr20 64444167 + 32420880 32421234 L1PA8 5853 + 5505 5853 45761 59 1 0 45 2 0 24 0 1 48 1 0 5 2 1 52 2 1 19 1 0 93 chain 4467 chr20 64444167 + 32662243 32662292 MER66C 541 + 370 419 88519 49 chain 3899 chr20 64444167 + 32699868 32699919 MLT2D 439 + 144 199 92132 34 0 1 10 0 3 7 chain 167679 chr20 64444167 + 32723171 32724961 SVA_F 1814 + 9 1814 11232 872 1 0 55 0 1 10 0 15 165 0 1 676 1 0 10 chain 23605 chr20 64444167 + 32734207 32734490 AluSg7 307 + 15 293 51421 116 0 1 152 6 0 9 chain 25135 chr20 64444167 + 32744547 32744843 AluSp 311 + 0 299 49066 91 0 3 205 chain 4057 chr20 64444167 + 32951051 32951158 L1ME1 1623 + 1128 1276 91028 18 45 86 44 chain 26433 chr20 64444167 + 32974640 32975024 LTR7 482 + 0 469 47077 79 7 57 88 0 1 26 12 44 12 0 1 45 12 13 103 chain 49146 chr20 64444167 + 32975109 32975667 LTR6B 557 + 0 555 29885 50 1 0 220 2 0 285 chain 33984 chr20 64444167 + 33114394 33114815 LTR12C 1709 + 1293 1707 38717 247 1 0 7 5 0 80 1 0 80 chain 138148 chr20 64444167 + 33114928 33116475 SVA_D 2077 + 6 2076 13255 21 7 1 618 0 1 114 0 40 115 1 490 214 1 0 456 chain 129327 chr20 64444167 + 33121801 33123371 THE1A-int 1579 + 0 1574 14110 135 0 2 145 0 2 28 1 0 43 1 0 439 0 1 158 1 2 619 chain 80658 chr20 64444167 + 33171373 33172404 L1PA8 5853 + 4831 5853 21500 179 2 0 549 6 5 44 2 0 70 19 17 45 2 1 19 1 0 93 chain 2929 chr20 64444167 + 33183081 33183178 MIRb 242 + 71 176 100585 29 51 59 17 chain 5225 chr20 64444167 + 33183448 33183511 MLT1J 494 + 96 159 84562 63 chain 23594 chr20 64444167 + 33243943 33244352 L1PA15 4387 + 3966 4367 51444 76 0 1 9 0 2 46 13 12 18 1 0 55 1 0 18 6 8 6 1 0 39 17 14 46 18 13 27 1 0 11 chain 4420 chr20 64444167 + 33366630 33366685 L1MD 993 + 308 363 88782 55 chain 111375 chr20 64444167 + 33388607 33389882 SVA_C 1631 + 1 1292 16894 19 0 15 310 0 1 504 19 20 8 0 1 71 2 0 44 0 1 23 1 0 274 chain 17222 chr20 64444167 + 33392348 33392590 MER30 238 + 0 238 59555 38 0 1 68 8 9 74 6 0 48 chain 15959 chr20 64444167 + 33567396 33568019 MER44A 345 + 0 345 61079 16 59 93 54 8 15 32 318 0 124 1 0 11 chain 177749 chr20 64444167 + 33698512 33700714 SVA_D 2077 + 58 2076 10691 626 5 0 232 2 1 30 13 0 45 1 0 41 3 5 209 48 0 112 126 0 29 0 1 4 9 8 37 0 2 377 0 6 253 chain 4308 chr20 64444167 + 33699719 33699767 SVA_D 2077 + 1071 1120 55455 21 0 1 27 chain 961 chr20 64444167 + 33699879 33699942 SVA_D 2077 + 1056 1120 45367 30 0 1 33 chain 1752 chr20 64444167 + 33699942 33700005 SVA_D 2077 + 1247 1310 24969 63 chain 47891 chr20 64444167 + 33700737 33701419 SVA_D 2077 + 0 649 30331 19 5 0 156 8 9 137 1 8 231 100 64 25 chain 8671 chr20 64444167 + 33701294 33701394 SVA_D 2077 + 600 700 42122 100 chain 19076 chr20 64444167 + 33701419 33701639 SVA_D 2077 + 725 944 42122 191 2 1 27 chain 18130 chr20 64444167 + 33701662 33702314 SVA_D 2077 + 1407 2059 24969 652 chain 14035 chr20 64444167 + 33886267 33886464 MER1A 529 + 316 521 63536 112 1 5 26 4 8 54 chain 18014 chr20 64444167 + 33917020 33917431 MSTC 436 + 0 262 58639 144 18 26 48 155 0 37 2 0 7 chain 6040 chr20 64444167 + 33918524 33918610 MADE1 96 + 0 96 80926 32 3 13 51 chain 34224 chr20 64444167 + 33934376 33934828 MLT2A1 477 + 0 477 38546 169 4 1 94 6 12 37 0 2 68 5 25 69 chain 6921 chr20 64444167 + 33938583 33938673 MER5A1 166 + 63 155 77877 31 0 3 43 1 0 15 chain 4691 chr20 64444167 + 33957218 33957278 L1MB7 1623 + 720 780 87314 60 chain 26055 chr20 64444167 + 33965596 33965944 LTR12 884 + 0 858 47650 57 14 524 277 chain 10802 chr20 64444167 + 34006666 34006896 Tigger3a 397 + 170 397 68854 82 35 0 12 41 73 60 chain 22173 chr20 64444167 + 34007256 34007538 AluSc 308 + 17 297 53603 114 1 0 124 8 7 35 chain 3250 chr20 64444167 + 34060257 34060371 Tigger4a 237 - 96 232 97483 31 3 0 7 45 55 8 0 15 20 chain 174552 chr20 64444167 + 34130234 34134739 HERVK-int 6823 + 3604 6521 10866 397 1 7 693 1 2 456 1920 449 109 9 8 23 1 0 100 1 0 31 5 4 123 1 0 51 3 0 5 1 0 8 5 3 73 4 2 6 1 0 24 17 11 11 1 0 20 192 117 8 2 0 13 1 0 14 5 4 8 2 0 30 40 29 10 10 4 8 1 0 8 4 2 29 1 0 4 1 0 13 chain 157320 chr20 64444167 + 34131810 34133677 SVA_D 2077 + 6 2077 11925 14 6 0 520 0 40 328 4 64 15 0 2 13 0 52 202 49 0 47 0 98 534 0 9 120 2 0 13 chain 3430 chr20 64444167 + 34132912 34132961 SVA_D 2077 + 1080 1129 39183 49 chain 11329 chr20 64444167 + 34136616 34136877 L1MA4A 3247 + 2559 2791 68036 15 6 0 87 41 39 15 9 0 7 1 0 30 8 1 23 4 0 15 chain 61953 chr20 64444167 + 34152059 34152950 LTR12 884 + 0 884 25874 25 1 0 6 10 0 24 0 107 214 2 0 105 107 2 282 0 4 115 chain 5602 chr20 64444167 + 34157533 34157618 LTR12 884 + 0 84 82797 25 13 12 47 chain 2200 chr20 64444167 + 34157619 34157646 LTR12 884 + 349 376 105295 27 chain 42140 chr20 64444167 + 34157648 34158153 LTR12 884 + 376 884 33282 389 0 4 69 1 0 46 chain 146058 chr20 64444167 + 34222666 34224238 SVA_F 1814 + 10 1814 12609 691 0 40 139 0 2 10 1 0 6 0 191 725 chain 87978 chr20 64444167 + 34298169 34299197 LTR13 1007 + 0 1007 20051 425 26 5 577 chain 128347 chr20 64444167 + 34327273 34328733 L1PA6 6164 + 4686 6154 14240 280 0 1 345 0 4 97 0 3 738 chain 36469 chr20 64444167 + 34357763 34359591 MER41B 635 + 0 611 37094 102 291 0 15 7 10 26 8 23 275 1025 81 79 chain 3927 chr20 64444167 + 34360206 34360251 MER5A 189 + 66 111 91934 45 chain 2986 chr20 64444167 + 34540101 34540139 MER5A 189 + 35 71 100002 28 2 0 8 chain 3381 chr20 64444167 + 34563049 34563130 MADE2 80 - 0 80 96283 26 29 28 26 chain 25858 chr20 64444167 + 34609752 34610091 THE1C 375 + 0 336 47929 120 4 0 64 1 2 150 chain 171166 chr20 64444167 + 34610091 34612529 L1PA8 5853 + 3730 5853 11041 1004 0 2 251 0 4 15 325 8 70 1 4 92 0 2 9 0 1 108 0 1 158 0 2 61 0 3 39 1 0 43 3 1 70 2 1 9 2 1 51 2 1 19 1 0 18 0 3 13 13 1 58 chain 12575 chr20 64444167 + 34615510 34615733 MER44B 551 + 1 246 65843 6 1 0 59 1 8 97 36 52 23 chain 52611 chr20 64444167 + 34617090 34617750 THE1A-int 1579 + 907 1568 28697 16 13 12 96 0 2 535 chain 170170 chr20 64444167 + 34657951 34660066 SVA_D 2077 + 0 2077 11097 19 5 0 16 3 1 528 0 40 158 40 0 132 14 56 10 0 1 30 9 63 98 2 1 235 123 0 13 4 0 676 chain 2520 chr20 64444167 + 34658680 34658720 SVA_D 2077 + 646 685 77634 5 0 2 28 6 3 1 chain 7740 chr20 64444167 + 34659250 34659373 SVA_D 2077 + 1034 1159 30070 2 0 2 121 chain 13348 chr20 64444167 + 34685618 34685782 Tigger3a 397 + 142 306 64547 164 chain 9906 chr20 64444167 + 34830661 34830784 L1MB3 1562 + 766 889 70602 123 chain 6233 chr20 64444167 + 34868695 34868975 MLT1K 546 + 199 464 80228 23 68 52 48 96 101 19 4 0 22 chain 9619 chr20 64444167 + 35101240 35101377 MER39B 650 + 197 322 71224 24 0 2 6 14 0 93 chain 2865 chr20 64444167 + 35116079 35116109 L2a 937 + 359 389 101097 30 chain 160520 chr20 64444167 + 35152901 35155074 SVA_F 1814 + 10 1814 11718 632 0 1 151 226 0 22 1 0 17 22 14 8 1 0 30 1 2 61 0 15 38 1 0 10 1 0 116 41 0 62 100 0 612 7 0 13 chain 15893 chr20 64444167 + 35153684 35153910 SVA_F 1814 + 834 1074 31705 21 1 0 25 0 1 17 2 1 48 4 19 108 chain 1525 chr20 64444167 + 35154239 35154270 SVA_F 1814 + 936 982 70745 11 0 15 20 chain 6316 chr20 64444167 + 35154342 35154442 SVA_F 1814 + 964 1013 52285 47 51 0 2 chain 4234 chr20 64444167 + 35154389 35154439 SVA_F 1814 + 962 1011 66937 32 1 0 17 chain 300389 chr20 64444167 + 35160645 35165039 L1PA7 6471 + 0 6464 6815 192 16 17 198 8 0 18 360 37 158 2 1 199 302 5 37 6 7 31 31 39 79 1 2 421 2 0 149 0 1 88 1 2 88 1 5 184 0 2661 51 0 6 85 0 1 46 0 2 167 0 1 116 0 4 524 0 2 340 0 7 28 2 1 443 0 1 20 chain 4200 chr20 64444167 + 35167954 35168002 MIRb 242 + 68 116 90117 48 chain 111612 chr20 64444167 + 35183939 35185845 L1PB1 5432 + 3851 5404 16861 60 7 8 290 1 0 107 319 0 313 15 0 74 0 2 100 0 1 4 1 0 293 1 2 12 3 0 30 27 20 53 2 1 16 1 0 44 1 0 15 1 0 4 19 8 19 54 58 6 1 0 13 chain 22382 chr20 64444167 + 35186320 35186586 AluSp 311 + 34 302 53300 29 0 2 237 chain 50722 chr20 64444167 + 35188809 35189788 MER11C 1089 + 1 1074 29306 45 9 100 113 0 3 198 8 11 6 4 0 22 189 178 31 3 14 16 18 8 28 6 14 15 6 8 11 21 22 45 0 1 170 1 0 14 chain 32587 chr20 64444167 + 35199019 35199468 Tigger1 2417 + 1016 1474 39881 18 12 15 122 10 13 271 0 3 16 chain 16987 chr20 64444167 + 35222292 35222477 L1PA3long 6157 + 5972 6157 59823 185 chain 53403 chr20 64444167 + 35222485 35223073 L1PA4 6152 + 5291 5878 28426 527 1 0 60 chain 5099 chr20 64444167 + 35353422 35353507 Tigger3 1187 + 684 769 85169 14 1 0 44 7 8 19 chain 5900 chr20 64444167 + 35390438 35390580 L1MB2 1706 + 1532 1683 81486 21 35 51 7 1 0 14 2 1 32 5 0 25 chain 3423 chr20 64444167 + 35390814 35390877 L1MC4a 1092 + 682 746 95883 23 2 0 9 8 11 21 chain 36840 chr20 64444167 + 35403540 35403955 L1PA5 6144 + 5613 6028 36853 415 chain 19855 chr20 64444167 + 35533954 35534212 AluSc 308 + 11 264 56604 37 14 9 207 chain 2703 chr20 64444167 + 35589029 35589082 MER75B 242 - 161 214 102333 16 13 13 24 chain 16346 chr20 64444167 + 35643152 35643369 7SK 245 + 13 239 60576 125 6 9 52 0 6 34 chain 78288 chr20 64444167 + 35686722 35687733 LTR13 1007 + 0 1007 22029 73 2 0 195 0 1 112 4 5 114 4 8 175 38 28 104 0 1 109 0 2 48 2 1 31 chain 4037 chr20 64444167 + 35927527 35927608 MER3 215 + 114 210 91168 21 25 40 35 chain 5261 chr20 64444167 + 35950421 35950496 Tigger3c 601 + 28 104 84386 22 2 3 51 chain 20721 chr20 64444167 + 36032215 36032555 THE1C 375 + 8 354 55467 22 1 0 17 0 6 15 17 18 23 5 6 65 0 1 4 22 21 144 1 0 4 chain 26375 chr20 64444167 + 36054351 36054702 THE1A 353 + 0 353 47156 47 0 1 48 1 0 11 16 18 228 chain 27757 chr20 64444167 + 36062371 36062823 MER66B 489 + 0 463 45241 150 13 14 23 0 1 99 3 2 44 29 33 20 26 25 15 0 7 30 chain 43917 chr20 64444167 + 36083264 36084137 MER41A 554 + 0 554 32185 92 0 1 32 0 3 190 0 1 132 324 0 103 chain 5453 chr20 64444167 + 36289950 36290015 Tigger3b 1229 + 628 693 83447 65 chain 2962 chr20 64444167 + 36444207 36444240 MER3 215 + 13 46 100265 33 chain 13574 chr20 64444167 + 36447820 36448019 L1PA8 5853 + 5608 5802 64208 35 0 8 28 1 0 9 2 0 12 8 0 44 2 1 15 1 0 42 chain 29009 chr20 64444167 + 36636135 36636448 AluYb8 318 + 0 309 43309 126 4 0 183 chain 33027 chr20 64444167 + 36693486 36693976 MER1A 529 + 0 518 39495 84 47 59 256 1 8 48 5 14 49 chain 69722 chr20 64444167 + 36694968 36696081 MER11B 1079 + 0 1079 24066 200 3 5 182 1 0 70 22 21 18 24 12 15 0 1 14 17 9 47 0 1 104 0 7 12 1 0 16 86 61 25 5 6 53 0 1 78 1 0 91 2 1 14 1 4 11 chain 24381 chr20 64444167 + 36708752 36709051 AluSp 311 + 1 295 50198 32 5 0 242 0 2 12 2 0 6 chain 18022 chr20 64444167 + 36735206 36735441 Tigger4a 237 + 0 237 58631 104 3 4 62 0 1 66 chain 7134 chr20 64444167 + 36830340 36830574 AluJo 314 + 197 292 77154 17 137 0 73 2 0 5 chain 8451 chr20 64444167 + 36914662 36915450 Tigger2a 444 + 204 380 73795 62 667 53 28 0 2 31 chain 18541 chr20 64444167 + 36960041 36960723 MER51B 395 + 0 394 58058 34 13 32 34 23 17 94 373 60 28 0 12 83 chain 41013 chr20 64444167 + 36962297 36962809 MER9a3 513 + 0 513 33962 63 26 9 202 0 18 221 chain 8589 chr20 64444167 + 36972357 36972488 MER50 708 + 113 243 73472 23 19 17 21 0 1 68 chain 3098 chr20 64444167 + 36987355 36987389 LOR1a 498 + 0 34 98801 34 chain 35939 chr20 64444167 + 36993146 36993927 THE1B-int 1605 + 18 518 37448 86 0 1 312 307 0 13 1 26 62 chain 150413 chr20 64444167 + 36999460 37001768 SVA_D 2077 + 0 2074 12321 14 0 3 526 496 184 41 2 82 16 0 82 53 78 0 33 1 4 5 1 0 304 1 0 147 14 0 482 0 4 94 chain 37671 chr20 64444167 + 37000001 37000496 SVA_F 1814 + 405 1024 28109 20 0 116 83 0 40 216 0 3 64 0 15 15 48 0 23 1 0 5 1 0 19 chain 2440 chr20 64444167 + 37000399 37000428 SVA_F 1814 + 1104 1133 60290 29 chain 5936 chr20 64444167 + 37000608 37000686 SVA_F 1814 + 1185 1263 28109 78 chain 156604 chr20 64444167 + 37011855 37013603 SVA_D 2077 + 14 2077 11962 123 0 13 258 1 0 350 0 40 114 0 86 16 0 51 41 1 79 177 0 49 233 1 0 433 chain 3047 chr20 64444167 + 37034817 37034926 L1MC1 2226 + 2085 2184 99339 18 61 51 30 chain 21688 chr20 64444167 + 37039350 37039653 THE1B 368 + 0 307 54241 41 1 2 126 6 5 24 0 3 9 0 4 16 1 0 10 2 0 67 chain 10040 chr20 64444167 + 37042954 37043836 L1MB8 1703 + 1367 1588 70332 29 3 5 20 688 25 48 30 30 64 chain 145749 chr20 64444167 + 37068866 37070491 SVA_F 1814 + 0 1813 12634 911 0 191 695 3 0 16 chain 24077 chr20 64444167 + 37109388 37109690 AluSq10 312 + 0 306 50688 125 1 0 34 0 1 39 0 3 76 0 1 27 chain 160528 chr20 64444167 + 37125175 37127141 SVA_D 2077 + 18 2070 11717 18 29 0 12 1 0 5 0 2 782 40 0 71 2 0 10 2 0 25 45 5 39 0 51 68 0 1 23 0 1 4 18 46 158 5 104 40 0 17 354 0 1 215 chain 3383 chr20 64444167 + 37126172 37126217 SVA_D 2077 + 1257 1302 45161 45 chain 28872 chr20 64444167 + 37127141 37127451 AluYg6 310 + 0 310 43526 310 chain 13716 chr20 64444167 + 37128646 37128831 MER107 203 + 8 196 63998 154 0 9 10 7 1 14 chain 108665 chr20 64444167 + 37150246 37151650 SVA_B 1603 + 6 1393 17223 15 15 0 15 24 8 22 0 5 633 11 12 36 3 0 64 46 52 24 0 1 13 0 1 27 0 1 13 0 1 162 8 9 273 chain 1958 chr20 64444167 + 37151084 37151121 SVA_B 1603 + 739 776 82498 37 chain 3357 chr20 64444167 + 37353905 37353944 MIR 256 + 97 136 96507 39 chain 35039 chr20 64444167 + 37535504 37536079 MER50 708 + 6 582 37992 37 15 6 5 0 1 51 1 0 25 31 41 181 0 35 14 36 0 34 13 15 52 1 0 79 chain 4043 chr20 64444167 + 37538934 37538987 L1MC4 1079 + 257 310 91131 53 chain 46378 chr20 64444167 + 37554568 37555240 MER50 708 + 6 686 30891 38 0 3 7 3 5 47 1 0 64 0 1 21 0 3 158 0 35 14 36 0 34 13 15 52 1 0 183 chain 6452 chr20 64444167 + 37560270 37560368 MER41B 635 + 511 630 79509 38 11 32 49 chain 17521 chr20 64444167 + 37561318 37561810 MER41C 542 + 207 542 59220 24 0 3 77 9 30 18 245 64 119 chain 4945 chr20 64444167 + 37617060 37617202 MER53 195 - 27 171 85907 27 21 20 12 40 43 42 chain 18627 chr20 64444167 + 37674703 37675030 THE1C 375 + 0 335 57970 15 2 0 32 0 6 17 15 16 44 0 3 11 1 2 26 31 27 25 4 7 104 chain 4373 chr20 64444167 + 37932683 37932747 LTR16C 481 + 382 453 89043 47 4 11 13 chain 4567 chr20 64444167 + 37953410 37953463 LTR51 675 + 274 328 87983 36 0 1 17 chain 28272 chr20 64444167 + 37962019 37962321 AluYb9 318 + 10 312 44452 302 chain 6535 chr20 64444167 + 37971496 37971599 LTR19A 502 + 402 502 79214 28 12 9 63 chain 17102 chr20 64444167 + 38029691 38030037 MSTC 436 + 0 424 59691 59 0 6 12 20 83 25 0 5 18 62 65 13 0 2 16 12 11 109 chain 3816 chr20 64444167 + 38150454 38150500 MER5A 189 + 30 76 92737 46 chain 5746 chr20 64444167 + 38179312 38179376 MSTA 426 + 32 96 82142 64 chain 26219 chr20 64444167 + 38179391 38179745 L1PA8 5853 + 5506 5853 47392 56 1 0 47 2 0 67 4 3 10 1 0 51 2 1 19 1 0 93 chain 4047 chr20 64444167 + 38224060 38224107 MIR 256 + 64 111 91103 47 chain 161708 chr20 64444167 + 38264614 38266845 L1MA2 4263 + 1879 4114 11630 8 0 1 82 1 0 158 26 6 82 13 12 416 4 3 42 13 8 43 7 6 41 0 48 73 1 2 263 0 4 181 0 1 224 18 13 33 3 0 168 12 9 141 1 0 9 2 1 9 1 0 81 21 14 43 1 0 10 chain 5313 chr20 64444167 + 38339661 38339724 MADE1 96 + 0 80 84130 46 0 17 17 chain 160047 chr20 64444167 + 38378136 38379934 SVA_D 2077 + 7 2064 11752 48 5 0 154 1 0 342 0 40 96 0 40 151 0 83 75 0 2 53 0 2 137 0 1 72 0 98 231 1 0 432 chain 10395 chr20 64444167 + 38385232 38385416 THE1C 375 + 151 335 69630 34 3 4 23 31 30 93 chain 22099 chr20 64444167 + 38386011 38386404 MER57B1 401 + 13 396 53700 17 0 7 6 1 0 128 0 2 79 20 0 34 69 71 39 chain 7100 chr20 64444167 + 38399887 38400037 MLT1B 390 + 229 390 77265 34 49 58 29 0 2 38 chain 105254 chr20 64444167 + 38407120 38408350 SVA_B 1603 + 303 1603 17654 317 0 77 201 3 0 22 4 0 25 0 1 30 1 0 627 chain 25960 chr20 64444167 + 38417866 38418165 AluSg7 307 + 0 304 47779 128 0 5 171 chain 4439 chr20 64444167 + 38418242 38418320 Tigger1 2417 + 2224 2303 88668 19 13 14 46 chain 7050 chr20 64444167 + 38467479 38467614 MLT1A 405 + 0 125 77441 15 1 3 4 1 0 8 12 0 47 6 7 41 chain 2848 chr20 64444167 + 38516556 38516638 MADE1 96 - 0 96 101246 20 24 38 38 chain 35730 chr20 64444167 + 38549894 38550304 L1PA3long 6157 + 5747 6157 37579 410 chain 5866 chr20 64444167 + 38564224 38564400 MER58A 224 + 45 223 81622 31 89 91 56 chain 26450 chr20 64444167 + 38667056 38667353 AluYk4 311 + 0 297 47056 297 chain 13178 chr20 64444167 + 38698656 38698823 LTR17 781 + 288 453 64816 39 1 0 3 1 0 123 chain 16306 chr20 64444167 + 38761527 38761766 7SK 245 + 0 241 60617 77 39 41 123 chain 4735 chr20 64444167 + 38789256 38789318 MLT1B 390 + 37 107 87052 8 0 8 54 chain 9766 chr20 64444167 + 38848009 38848167 MER58A 224 + 46 207 70900 96 30 33 32 chain 5414 chr20 64444167 + 38912313 38912376 MER5A 189 + 6 69 83630 63 chain 28911 chr20 64444167 + 38955176 38955485 AluYk12 309 + 1 308 43468 122 2 0 185 chain 5267 chr20 64444167 + 39063917 39064022 MLT1C 463 + 8 122 84348 13 33 42 59 chain 3307 chr20 64444167 + 39076895 39076931 MER30 238 + 193 229 96947 36 chain 80051 chr20 64444167 + 39143399 39144291 L1PA2 6032 + 5130 6030 21617 742 4 11 133 1 2 12 chain 11270 chr20 64444167 + 39262629 39262786 L1MA5 2750 + 2466 2621 68129 90 7 6 50 1 0 9 chain 28053 chr20 64444167 + 39286225 39286581 THE1A 353 + 0 353 44782 109 2 1 56 0 1 35 2 0 77 1 0 74 chain 131498 chr20 64444167 + 39286581 39288138 THE1A-int 1579 + 0 1574 13871 440 0 2 629 0 12 293 2 0 66 0 5 127 chain 3808 chr20 64444167 + 39318336 39318386 MIR 256 + 177 227 92780 50 chain 19389 chr20 64444167 + 39340450 39340702 L1PA16 3655 + 3311 3559 57140 189 0 1 39 6 1 18 chain 19009 chr20 64444167 + 39344800 39345078 Tigger3b 1229 + 344 646 57542 142 2 1 34 5 11 35 1 0 10 2 22 47 chain 483757 chr20 64444167 + 39368235 39373484 L1PA2 6032 + 773 6028 3559 125 1 0 44 1 0 4 0 1 28 0 1 4206 0 4 40 0 2 215 0 1 568 1 0 16 chain 19848 chr20 64444167 + 39413625 39413859 L1PA5 6144 + 5907 6139 56615 171 3 1 60 chain 3271 chr20 64444167 + 39425519 39425676 MER5A 189 + 0 159 97289 23 31 32 16 64 65 23 chain 68490 chr20 64444167 + 39471143 39471891 L1PA3long 6157 + 4229 4977 24337 748 chain 29069 chr20 64444167 + 39483044 39483703 LTR19-int 1103 + 96 620 43234 28 17 0 7 1 0 17 1 0 54 79 19 34 27 6 40 29 26 37 8 0 88 6 1 23 23 25 5 3 0 70 4 0 19 14 0 25 chain 28161 chr20 64444167 + 39486438 39486755 L1P1 4361 + 2749 3066 44613 317 chain 5232 chr20 64444167 + 39486774 39487012 LTR19-int 1103 + 630 769 84540 15 1 0 13 150 53 9 1 0 49 chain 37381 chr20 64444167 + 39488557 39489051 LTR19A 502 + 0 502 36494 78 1 8 146 6 5 74 1 2 147 6 7 35 chain 15109 chr20 64444167 + 39539066 39539238 L1PA7 6471 + 6294 6466 62142 172 chain 3687 chr20 64444167 + 39559691 39559771 MADE1 96 + 0 96 93694 15 14 30 51 chain 116115 chr20 64444167 + 39584903 39586186 L1PA3long 6157 + 3762 5045 16211 1283 chain 178069 chr20 64444167 + 39608821 39611035 L1PA8A 6298 + 4071 6291 10673 59 0 1 6 0 1 143 2 0 5 2 4 133 0 1 24 0 1 232 7 5 9 0 1 94 0 1 274 0 1 71 0 2 334 12 11 95 0 1 54 1 0 545 7 0 6 5 12 94 chain 44200 chr20 64444167 + 39721011 39721532 MER9a2 513 + 0 513 32011 129 4 2 315 6 0 67 chain 308978 chr20 64444167 + 39722919 39726629 HERVK9-int 4720 + 54 4720 6640 4 1 0 66 1 0 8 1 0 28 1 0 206 32 32 376 3 2 206 0 1 19 0 24 145 3 5 84 1 0 151 0 1 4 1 0 80 0 924 1817 3 4 206 0 1 96 0 9 167 chain 43834 chr20 64444167 + 39726629 39727137 MER9a2 513 + 0 506 32227 129 4 2 375 chain 13799 chr20 64444167 + 39742225 39742377 L1PA2 6032 + 3971 4123 63885 152 chain 3671 chr20 64444167 + 39750906 39750946 MER33 330 + 30 70 93808 40 chain 27330 chr20 64444167 + 39765053 39765406 THE1A 353 + 0 353 45786 109 2 1 131 1 2 110 chain 343673 chr20 64444167 + 39802657 39806397 L1PA2 6032 + 2294 6032 5999 1702 2 1 319 1 0 1716 chain 4501 chr20 64444167 + 39808829 39808937 MER96B 391 - 218 324 88320 21 4 6 17 21 18 4 1 0 40 chain 39891 chr20 64444167 + 39827126 39827980 MER41C 542 + 0 542 34745 49 0 1 42 0 4 129 319 0 62 0 1 20 12 13 221 chain 11151 chr20 64444167 + 39875336 39875462 L1PA3long 6157 + 5822 5946 68343 82 2 0 42 chain 257262 chr20 64444167 + 39919701 39922577 L1PA4 6152 + 3085 5968 8050 114 1 0 57 0 3 18 0 1 476 1 0 868 0 1 563 0 4 778 chain 26424 chr20 64444167 + 39977475 39977782 L1HS 6032 + 6 313 46710 68 0 1 181 1 0 57 chain 165587 chr20 64444167 + 39977782 39979577 L1PA2 6032 + 4228 6027 11365 557 0 4 1238 chain 110033 chr20 64444167 + 39997275 39998863 L1PA8A 6298 + 4705 6139 17077 638 0 5 141 3 1 26 1 0 4 0 1 34 47 50 107 6 4 203 167 9 211 chain 6517 chr20 64444167 + 39998577 39998652 L1PA8A 6298 + 5842 5917 79283 75 chain 17685 chr20 64444167 + 40002246 40002536 L1PA8 5853 + 5551 5834 59022 13 1 0 44 2 0 71 27 25 38 1 0 18 1 0 32 0 6 7 6 0 29 chain 6307 chr20 64444167 + 40054461 40054541 MADE1 96 + 0 96 79973 37 1 17 42 chain 8657 chr20 64444167 + 40060258 40060392 THE1D-int 1627 + 393 522 73337 25 11 13 47 7 0 44 chain 29718 chr20 64444167 + 40093109 40093543 LTR7Y 441 + 0 441 42350 103 9 0 57 68 84 197 chain 279597 chr20 64444167 + 40093543 40097368 HERVH-int 3825 + 0 3825 7432 212 0 11 309 5 0 38 1 0 10 1 0 24 2 15 12 3 41 26 3 2 49 6 7 7 0 2 13 0 3 69 320 0 195 0 2 394 0 1 241 13 33 299 0 10 423 0 1 52 0 12 157 6 7 174 1 0 5 1 2 146 1 2 64 9 11 39 8 218 13 6 0 7 3 9 171 8 3 51 3 8 225 chain 29727 chr20 64444167 + 40098575 40099009 LTR7Y 441 + 0 441 42329 103 9 0 57 68 84 197 chain 24104 chr20 64444167 + 40252847 40253200 THE1C 375 + 1 355 50641 12 2 0 14 1 0 20 0 6 17 15 16 93 7 4 172 chain 39057 chr20 64444167 + 40269053 40269503 LTR7 482 + 0 482 35313 225 0 1 20 1 32 204 chain 288875 chr20 64444167 + 40269505 40273049 HERVH-int 3825 + 0 3825 7166 52 0 3 477 69 0 38 1 0 12 1 0 22 1 52 40 5 4 54 8 11 13 0 3 660 0 1 217 3 4 18 10 35 299 0 10 153 0 3 889 9 11 39 8 218 236 0 29 30 1 13 179 chain 39991 chr20 64444167 + 40274311 40274761 LTR7 482 + 0 482 34668 225 0 1 4 0 31 221 chain 35292 chr20 64444167 + 40292471 40292931 L1PA7 6471 + 6008 6467 37829 125 1 2 37 4 5 4 1 0 278 2 0 8 chain 227531 chr20 64444167 + 40553442 40556599 L1PA10 4194 + 175 3333 8827 12 2 0 12 3 0 7 2 0 13 5 1 12 2 0 9 1 0 9 1 0 21 2 0 15 1 0 8 69 41 21 42 30 8 1 0 9 1 0 78 46 45 448 1 0 4 0 1 146 0 3 53 0 1 5 2 1 102 0 4 147 0 19 152 1 0 542 0 7 59 0 1 163 1 0 10 5 9 122 1 10 73 7 4 64 0 1 228 0 1 386 0 18 23 chain 3843 chr20 64444167 + 40566380 40566423 Tigger4a 237 - 189 232 92546 43 chain 15528 chr20 64444167 + 40569992 40570237 L1PA16 3655 + 3403 3619 61617 38 3 0 136 3 0 10 7 0 3 11 0 13 5 0 16 chain 54828 chr20 64444167 + 40609120 40609753 L1PA3long 6157 + 5541 6157 27936 389 0 1 61 19 0 22 0 1 142 chain 31462 chr20 64444167 + 40610066 40610430 L1PA8A 6298 + 5927 6291 40767 364 chain 548029 chr20 64444167 + 40619323 40625348 L1PA3long 6157 + 0 6152 859 152 0 1 503 11 0 125 0 128 253 0 3 3242 0 2 901 0 4 838 chain 3598 chr20 64444167 + 40665083 40665122 MIR 256 + 72 111 94438 39 chain 22520 chr20 64444167 + 40857023 40857408 THE1D 372 + 0 372 53093 54 8 9 12 17 0 3 1 0 88 31 32 85 0 2 37 11 12 38 chain 4639 chr20 64444167 + 40862112 40862170 LTR16C 481 + 398 457 87600 28 0 1 30 chain 15565 chr20 64444167 + 40878718 40879045 L1PB1 5432 + 5114 5418 61569 24 8 6 12 2 0 3 2 0 9 2 0 52 3 2 14 1 0 41 1 7 12 1 0 4 2 0 5 16 8 13 12 9 11 2 0 24 1 0 22 1 0 12 1 0 14 chain 20756 chr20 64444167 + 40903781 40904095 L1MC2 1988 + 1587 1906 55425 84 4 6 15 1 5 26 7 13 111 6 2 52 3 0 5 chain 78341 chr20 64444167 + 40911158 40912388 LTR12E 1234 + 149 1234 22018 83 6 6 518 50 0 78 15 26 167 0 1 43 101 0 38 54 48 77 chain 3888 chr20 64444167 + 40912174 40912219 LTR12E 1234 + 1025 1070 91615 45 chain 36676 chr20 64444167 + 40917189 40917580 L1PA3long 6157 + 5766 6157 36971 391 chain 4144 chr20 64444167 + 40923624 40923675 L1MB7 1623 + 1379 1429 90493 44 1 0 6 chain 4249 chr20 64444167 + 40996589 40996638 L1MC5 759 + 225 274 89829 49 chain 11584 chr20 64444167 + 41024208 41024377 U2 167 + 0 164 67597 131 2 0 6 2 0 5 3 1 5 0 1 15 chain 54989 chr20 64444167 + 41129188 41129776 L1PA3long 6157 + 4446 5034 27878 588 chain 399579 chr20 64444167 + 41205817 41210491 L1PA6 6164 + 636 5799 5161 303 0 25 459 8 13 197 0 1 55 1 0 139 1 0 214 1 0 134 0 459 554 0 1 41 0 3 310 15 16 565 0 1 371 0 2 208 1 0 5 0 1 37 5 0 563 1 0 486 chain 220800 chr20 64444167 + 41235280 41237765 L1PA4 6152 + 3647 6152 9020 395 0 1 645 0 1 461 1 6 148 0 4 778 0 4 51 0 5 6 chain 3480 chr20 64444167 + 41251021 41251059 L1MDa 1598 + 1072 1110 95378 38 chain 29026 chr20 64444167 + 41312067 41312510 LTR12F 595 + 9 563 43283 93 1 2 42 5 93 23 42 0 24 0 64 95 0 1 4 1 0 113 chain 24399 chr20 64444167 + 41381526 41381803 AluSp 311 + 8 288 50169 83 0 3 194 chain 6546 chr20 64444167 + 41383618 41383767 THE1B 368 + 153 306 79171 24 59 63 66 chain 24316 chr20 64444167 + 41399861 41400145 AluSp 311 + 11 295 50307 284 chain 10338 chr20 64444167 + 41435672 41435833 L1MD1 2063 + 894 1061 69718 64 14 20 83 chain 4331 chr20 64444167 + 41448659 41448716 MSTD 398 + 319 398 89283 8 0 22 49 chain 114607 chr20 64444167 + 41459800 41461336 THE1A-int 1579 + 0 1574 16458 116 1 4 152 25 26 285 6 8 129 9 11 140 9 12 179 0 1 76 7 5 49 1 11 104 0 7 177 0 1 37 0 10 34 chain 24540 chr20 64444167 + 41461341 41461682 THE1A 353 + 0 341 49962 65 1 3 12 6 5 24 2 1 231 chain 66672 chr20 64444167 + 41520084 41520832 L1PA4 6152 + 5404 6152 24780 294 0 1 448 1 0 5 chain 6085 chr20 64444167 + 41538383 41538489 L1MB5 1630 + 1306 1414 80781 44 14 17 25 1 0 22 chain 107090 chr20 64444167 + 41548466 41549653 L1PA4 6152 + 4962 6151 17422 305 3 4 30 0 1 849 chain 3744 chr20 64444167 + 41574983 41575031 MER51A 677 + 199 251 93303 41 0 4 7 chain 56974 chr20 64444167 + 41585863 41586600 LTR17 781 + 0 757 27275 161 1 0 18 1 0 128 1 0 20 1 0 62 2 5 9 1 0 292 2 24 38 chain 212306 chr20 64444167 + 41588900 41591302 L1PA5 6144 + 3664 6075 9263 935 0 4 170 0 1 422 8 9 86 0 4 516 2 1 263 chain 8671 chr20 64444167 + 41645087 41645287 THE1B 368 + 121 327 73286 48 63 68 5 1 0 44 0 2 18 1 0 4 1 2 15 chain 7999 chr20 64444167 + 41728456 41728556 MSTD-int 1705 + 1591 1690 74890 47 1 0 52 chain 125324 chr20 64444167 + 41765215 41766659 L1PA5 6144 + 4515 5970 14650 370 0 1 16 0 4 387 4 8 169 0 2 498 chain 7066 chr20 64444167 + 41773341 41773483 MER58A 224 + 42 185 77384 44 41 42 57 chain 17976 chr20 64444167 + 41779955 41780204 L1PA8 5853 + 5608 5853 58678 67 5 4 14 1 0 47 2 1 19 1 0 93 chain 7929 chr20 64444167 + 41826273 41826443 L1MA5A 2387 + 2155 2295 75047 32 1 0 24 1 0 4 3 0 10 31 5 44 1 2 19 chain 40566 chr20 64444167 + 41867760 41868295 L1PREC2 3366 + 2315 2850 34250 75 13 9 164 4 9 23 0 1 150 0 1 5 2 0 54 1 0 44 chain 4071 chr20 64444167 + 41887219 41887263 L1PA8A 6298 + 6011 6055 90945 44 chain 4463 chr20 64444167 + 41901339 41901391 MER5A 189 + 131 183 88538 52 chain 19327 chr20 64444167 + 41917247 41917504 L1PA6 6164 + 5875 6132 57209 127 16 16 114 chain 9214 chr20 64444167 + 41943366 41943474 L1PA7 6471 + 6349 6457 72095 108 chain 76712 chr20 64444167 + 41970895 41971863 LTR5_Hs 974 + 0 974 22391 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 10548 chr20 64444167 + 42054983 42055096 L1PA2 6032 + 5916 6029 69324 113 chain 22878 chr20 64444167 + 42060428 42060784 THE1B 368 + 0 368 52538 34 6 21 117 1 0 20 3 1 71 28 9 12 0 19 64 chain 20621 chr20 64444167 + 42194908 42195149 L1PA4 6152 + 5893 6135 55606 108 0 1 133 chain 551149 chr20 64444167 + 42206269 42212317 L1PA2 6032 + 0 6032 664 74 0 1 182 1 0 244 9 0 1697 1 0 445 2 0 1574 0 3 1747 7 0 65 chain 16410 chr20 64444167 + 42267147 42267398 MER47A 366 + 107 353 60506 123 5 0 60 0 16 15 20 4 28 chain 4031 chr20 64444167 + 42267428 42267502 MER33 330 + 212 287 91232 41 16 17 17 chain 45033 chr20 64444167 + 42288958 42289622 L1PA17 2846 + 2041 2693 31559 156 0 2 171 0 1 28 13 0 16 0 7 77 4 0 20 7 0 16 1 0 65 11 10 22 1 0 5 9 14 42 chain 42691 chr20 64444167 + 42312888 42313438 MER41A 554 + 0 554 32951 158 0 1 6 8 7 170 0 1 15 0 3 193 chain 11447 chr20 64444167 + 42315092 42315213 AluYb8 318 + 196 317 67837 121 chain 128700 chr20 64444167 + 42322110 42323523 L1PA3long 6157 + 4496 5910 14193 617 0 1 796 chain 98462 chr20 64444167 + 42388187 42389286 L1PA5 6144 + 5045 6144 18482 482 0 1 251 1 0 365 chain 40213 chr20 64444167 + 42427660 42428101 LTR7Y 441 + 0 441 34513 441 chain 48740 chr20 64444167 + 42515737 42516265 L1PA2 6032 + 5502 6030 30037 528 chain 19445 chr20 64444167 + 42564458 42564756 L1PA8 5853 + 5574 5853 57092 35 2 0 69 2 1 9 12 6 26 9 1 19 2 1 19 1 0 93 chain 118320 chr20 64444167 + 42664754 42666094 L1PA4 6152 + 4797 6143 15830 174 2 0 333 0 4 7 0 1 60 4 6 626 0 1 134 chain 27183 chr20 64444167 + 42672071 42672514 MLT2A2 560 + 0 560 45994 180 1 0 13 30 33 76 2 111 17 25 31 38 2 1 5 0 1 54 chain 4738 chr20 64444167 + 42710553 42710610 MSTB-int 1649 - 690 747 87027 57 chain 457867 chr20 64444167 + 42817680 42823499 L1PA8A 6298 + 468 6291 4185 208 3 4 458 18 11 222 1 19 93 27 0 139 1 0 201 0 1 657 4 7 16 24 0 46 0 4 124 0 2 169 7 6 51 3 4 466 12 13 30 0 4 128 4 5 304 0 2 15 1 2 390 0 1 404 0 2 186 0 8 261 0 1 357 1 4 4 0 1 13 0 1 56 0 2 170 0 7 440 2 1 103 chain 87979 chr20 64444167 + 42893049 42894021 L1PA3long 6157 + 5181 6157 20050 129 0 4 843 chain 13432 chr20 64444167 + 42904581 42904746 LTR1 825 + 12 191 64409 31 0 1 24 0 13 110 chain 115295 chr20 64444167 + 42904751 42906069 L1PA6 6164 + 4838 6162 16341 379 0 1 912 0 10 12 5 0 10 chain 43489 chr20 64444167 + 42978513 42979061 MER41A 554 + 0 549 32461 318 0 1 5 1 0 72 2 3 150 chain 4122 chr20 64444167 + 43008716 43008778 MLT1A0 366 + 290 355 90639 30 1 5 13 1 0 17 chain 38263 chr20 64444167 + 43011711 43012218 MLT2A2 560 + 0 560 35867 27 0 36 36 1 3 65 12 13 15 0 3 204 0 11 147 chain 13006 chr20 64444167 + 43019174 43019337 MLT2B5 662 + 0 163 65107 163 chain 27826 chr20 64444167 + 43134246 43134710 MER31A 484 + 0 484 45141 87 94 115 266 0 2 9 3 0 5 chain 6225 chr20 64444167 + 43144591 43144778 L1MB8 1703 + 1533 1660 80258 46 76 23 22 9 0 17 0 2 17 chain 27834 chr20 64444167 + 43257888 43258203 AluYa5 310 + 0 308 45133 126 4 0 168 3 0 14 chain 2642 chr20 64444167 + 43333130 43333205 LTR10C 591 + 0 76 32395 9 1 0 25 2 0 7 1 5 30 chain 58225 chr20 64444167 + 43333219 43333871 SVA_D 2077 + 1423 2075 26893 21 0 1 480 11 10 140 chain 17473 chr20 64444167 + 43333871 43334367 LTR10C 591 + 80 591 32395 92 0 13 19 1 0 16 0 1 289 0 2 79 chain 27317 chr20 64444167 + 43366656 43367036 L1PA16 3655 + 3209 3590 45805 9 0 1 71 2 0 108 0 5 78 5 6 84 1 0 7 3 0 12 chain 296584 chr20 64444167 + 43368451 43371737 L1PA3long 6157 + 2862 6157 6933 33 0 6 346 0 1 357 7 8 8 1 0 433 0 1 1252 0 1 849 chain 4791 chr20 64444167 + 43378410 43378464 MER5A 189 + 3 57 86745 54 chain 23941 chr20 64444167 + 43382368 43382794 LTR7 482 + 0 476 50878 56 2 0 18 12 62 47 44 0 28 11 53 42 1 2 12 0 2 97 13 14 43 chain 5733 chr20 64444167 + 43405479 43405547 U6 107 + 7 76 82212 55 0 1 13 chain 30038 chr20 64444167 + 43420917 43421285 THE1B 368 + 1 368 42015 171 2 1 195 chain 13695 chr20 64444167 + 43422415 43422683 L1MA5A 2387 + 2064 2285 64022 6 2 0 38 6 5 25 2 0 17 2 0 26 10 0 34 45 15 55 chain 32598 chr20 64444167 + 43438605 43439062 MER51A 677 + 0 677 39864 168 0 1 7 7 169 16 0 1 30 2 32 89 1 20 37 0 4 40 0 3 60 chain 20810 chr20 64444167 + 43456238 43456507 LTR12_ 688 + 2 296 55347 178 0 24 39 5 6 47 chain 9179 chr20 64444167 + 43473012 43473118 U6 107 + 0 106 72162 106 chain 4624 chr20 64444167 + 43496660 43496718 MLT1D 503 + 445 503 87680 58 chain 22233 chr20 64444167 + 43645279 43645550 AluY 311 + 8 276 53501 20 4 0 104 0 1 143 chain 22065 chr20 64444167 + 43653357 43653635 AluSp 311 + 11 292 53740 56 0 2 63 12 14 124 1 0 22 chain 23144 chr20 64444167 + 43666160 43666474 AluSc 308 + 6 299 52154 116 26 4 7 0 1 165 chain 63439 chr20 64444167 + 43677611 43678306 SVA_D 2077 + 1271 2066 25538 41 0 98 376 0 2 278 chain 25154 chr20 64444167 + 43685763 43686062 AluSp 311 + 8 302 49027 282 5 0 12 chain 557836 chr20 64444167 + 43814461 43820491 L1PA2 6032 + 1 6029 256 5178 3 1 849 chain 8893 chr20 64444167 + 43887879 43888107 MSTB2 466 + 228 466 72795 21 34 35 21 43 55 89 9 6 11 chain 3070 chr20 64444167 + 43967975 43968010 MER33 330 + 257 292 99099 35 chain 41667 chr20 64444167 + 43979527 43980236 L1MA2 4263 + 3410 4113 33579 102 20 26 36 18 12 44 4 5 24 19 18 43 0 1 75 13 10 138 0 2 9 1 0 9 2 1 17 9 10 66 7 0 16 1 0 12 1 5 14 1 0 8 chain 12024 chr20 64444167 + 44020312 44020465 L1PA8 5853 + 5702 5853 66809 42 1 0 16 2 1 92 chain 17246 chr20 64444167 + 44026150 44026458 L1PB1 5432 + 5021 5296 59530 29 0 1 28 0 3 21 1 2 11 27 0 22 1 0 9 1 0 9 2 0 3 2 0 6 3 1 54 2 1 15 1 0 41 4 3 16 chain 20112 chr20 64444167 + 44037814 44038081 THE1D-int 1627 + 0 276 56247 12 11 13 178 0 7 66 chain 34808 chr20 64444167 + 44047490 44047862 SVA_F 1814 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chain 3660 chr20 64444167 + 44117524 44117651 MER5A 189 + 7 136 93915 15 65 66 31 1 2 15 chain 4289 chr20 64444167 + 44122432 44122516 MER96B 391 + 92 171 89575 18 0 1 23 3 0 15 9 6 16 chain 3875 chr20 64444167 + 44142202 44142251 MER3 215 + 9 58 92316 49 chain 123383 chr20 64444167 + 44298950 44300378 LTR12C 1709 + 0 1708 14967 446 1 0 204 0 278 184 1 0 4 4 2 106 0 4 117 0 2 361 chain 3730 chr20 64444167 + 44320968 44321008 L1MC5 759 + 362 402 93397 40 chain 4648 chr20 64444167 + 44344847 44344924 HY1 111 + 9 105 87539 53 1 0 4 6 26 13 chain 3788 chr20 64444167 + 44496809 44496857 HY3 101 + 43 98 92927 34 0 7 14 chain 24975 chr20 64444167 + 44524765 44525170 LTR7 482 + 0 477 49321 31 27 28 12 31 19 20 7 57 57 5 37 44 0 1 171 chain 7860 chr20 64444167 + 44526370 44526523 MER51B 395 + 66 241 75228 32 15 21 48 10 27 16 1 0 4 0 1 13 2 1 12 chain 9777 chr20 64444167 + 44528453 44528570 LTR8 732 + 582 699 70867 117 chain 6471 chr20 64444167 + 44539719 44539822 MER30 238 + 67 238 79442 39 16 84 48 chain 31275 chr20 64444167 + 44670228 44670677 LTR7B 505 + 0 491 40915 108 0 10 57 45 77 26 0 2 85 1 0 76 14 13 37 chain 32962 chr20 64444167 + 44676307 44676774 LTR7B 505 + 0 505 39541 108 0 10 57 15 77 27 33 1 85 1 0 76 2 1 63 chain 32853 chr20 64444167 + 44730512 44731005 LTR3B_ 500 + 2 462 39627 69 6 5 75 10 11 140 1 2 104 0 2 10 38 2 40 chain 39372 chr20 64444167 + 44733945 44734478 MER41A 554 + 0 546 35100 15 0 1 71 5 6 82 9 14 241 0 1 36 1 6 73 chain 5463 chr20 64444167 + 44735026 44735085 MER41A 554 + 97 156 83390 59 chain 2198 chr20 64444167 + 44735092 44735120 MER41A 554 + 164 192 105298 28 chain 10193 chr20 64444167 + 44822836 44822967 MER85 139 + 0 139 70026 96 5 13 30 chain 28022 chr20 64444167 + 44855657 44855955 AluYa5 310 + 13 310 44830 119 1 0 178 chain 49185 chr20 64444167 + 44863444 44864112 LTR76 689 + 0 682 29872 49 0 3 277 0 12 8 0 1 26 5 6 9 0 1 157 1 2 89 2 0 7 8 7 9 2 0 19 chain 6650 chr20 64444167 + 44865467 44865553 MLT2A2 560 + 470 560 78813 80 0 4 6 chain 13519 chr20 64444167 + 44882710 44882955 L1MC2 1988 + 1759 1988 64289 35 3 0 53 18 14 55 25 17 15 1 0 40 chain 10711 chr20 64444167 + 44970123 44970239 L1PA3long 6157 + 6041 6157 69025 116 chain 5681 chr20 64444167 + 45004055 45004452 HY3 101 + 5 100 82423 42 310 7 10 1 2 34 chain 5006 chr20 64444167 + 45036005 45036118 L1MA8 2339 + 2160 2262 85628 38 4 0 7 1 0 13 16 15 10 4 0 14 1 0 5 chain 9724 chr20 64444167 + 45065958 45066121 MER44B 551 + 296 459 70995 57 37 37 69 chain 3043 chr20 64444167 + 45081987 45082020 MER2 342 + 0 33 99389 33 chain 37770 chr20 64444167 + 45088422 45088913 LTR3B_ 500 + 6 500 36228 70 1 0 80 5 6 135 1 2 49 0 1 58 0 2 45 1 0 46 chain 5811 chr20 64444167 + 45099196 45099268 MER5A 189 + 4 76 81870 72 chain 109624 chr20 64444167 + 45155121 45156703 THE1C-int 1605 + 25 1605 17109 85 0 54 213 1 0 57 0 1 5 140 67 35 2 3 159 9 10 27 7 16 380 0 4 74 3 4 376 0 1 9 chain 63701 chr20 64444167 + 45167442 45168184 L1PA5 6144 + 5095 5828 25474 85 10 1 647 chain 14352 chr20 64444167 + 45215953 45216310 L1PB1 5432 + 5107 5424 63110 7 1 0 24 1 0 9 16 11 11 11 9 42 6 5 12 1 0 44 1 0 15 1 0 4 2 0 10 9 0 11 21 11 14 2 0 16 9 8 21 1 0 13 1 0 16 1 0 4 chain 12519 chr20 64444167 + 45330973 45331125 MER41B 635 + 485 635 65952 116 2 0 34 chain 15172 chr20 64444167 + 45331211 45331416 MER41-int 2638 + 2429 2636 62070 22 1 2 97 1 2 84 chain 117542 chr20 64444167 + 45399902 45401460 THE1C-int 1605 + 33 1594 15967 83 0 1 90 0 1 104 15 21 112 0 7 72 6 4 252 0 1 258 7 8 105 1 2 204 13 0 236 chain 22843 chr20 64444167 + 45401472 45401811 THE1C 375 + 2 348 52601 71 20 21 85 0 2 5 7 8 9 0 3 142 chain 13062 chr20 64444167 + 45440404 45440595 MER4E1 777 + 556 768 65004 61 24 44 89 0 1 17 chain 8954 chr20 64444167 + 45460043 45460832 LOR1-int 1871 + 93 1079 72664 72 1 0 4 2 1 18 78 31 23 544 790 47 chain 7780 chr20 64444167 + 45482402 45482514 MER50 708 + 11 121 75417 42 8 6 62 chain 19430 chr20 64444167 + 45516580 45516834 MER47A 366 + 39 294 57104 76 1 2 177 chain 6506 chr20 64444167 + 45557732 45557804 HSMAR1 1287 + 1208 1280 79324 72 chain 525791 chr20 64444167 + 45651481 45657585 L1PA4 6152 + 17 6143 2010 114 0 14 377 0 1 37 0 1 179 0 1 77 0 17 7 17 0 319 0 3 130 3 1 333 0 4 335 4 1 125 0 1 2686 4 2 523 0 4 834 chain 4978 chr20 64444167 + 45657770 45657860 Tigger5 388 + 182 268 85767 52 7 6 5 1 0 15 2 0 8 chain 345683 chr20 64444167 + 45715013 45720245 L1PA11 4918 + 7 4567 5974 27 10 7 30 13 8 36 1 0 15 2 0 44 14 18 21 2 0 3 1 0 268 13 15 29 303 2 88 0 1 125 0 1 251 13 0 9 4 7 155 0 3 20 0 1 9 1 0 64 23 38 105 4 3 403 0 1 388 2 0 37 0 1 7 3 0 292 2 0 3 7 0 49 326 0 504 1 0 44 1 0 329 4 9 219 1 0 152 2 0 287 0 1 192 5 0 65 2 1 13 9 7 60 2 0 13 2 1 20 14 0 11 3 0 3 2 0 8 29 24 13 chain 22809 chr20 64444167 + 45736362 45737548 LTR12C 1709 + 773 1709 52646 31 0 1 4 0 39 199 428 576 18 438 0 68 chain 4695 chr20 64444167 + 45736600 45736705 LTR12C 1709 + 810 1037 70023 27 59 181 19 chain 30334 chr20 64444167 + 45759333 45759751 LTR7 482 + 0 482 41726 69 8 46 117 1 32 19 18 13 186 chain 251889 chr20 64444167 + 45759753 45763699 HERVH-int 3825 + 0 3825 8181 333 1 0 145 1 2 50 1 0 11 1 0 4 0 1 24 1 0 9 2 1 10 4 0 7 50 0 6 3 1 15 1 0 12 3 0 9 23 0 16 23 0 27 2 0 14 1 0 14 40 19 49 1 0 61 4 1 10 0 2 173 28 58 111 2 0 23 24 9 204 389 40 129 4 3 318 1 0 7 28 29 494 0 3 208 0 1 44 0 131 232 9 11 5 0 3 30 0 210 194 0 1 226 7 8 13 1 0 54 chain 30298 chr20 64444167 + 45764833 45765245 LTR7 482 + 0 482 41763 69 8 46 117 1 32 25 6 7 186 chain 5693 chr20 64444167 + 45845736 45845807 MER3 215 + 60 131 82375 71 chain 6960 chr20 64444167 + 45993956 45994043 MIR 256 + 23 110 77742 87 chain 9769 chr20 64444167 + 46006188 46006318 MER20 218 + 31 160 70887 51 3 0 5 0 2 71 chain 3506 chr20 64444167 + 46092538 46092599 LTR12C 1709 + 1028 1175 95195 40 7 93 14 chain 2195 chr20 64444167 + 46092599 46092627 LTR12C 1709 + 809 837 97093 28 chain 2880 chr20 64444167 + 46092670 46092705 LTR12C 1709 + 683 718 101002 35 chain 12530 chr20 64444167 + 46142956 46143235 L1MB7 1623 + 1000 1265 65928 37 1 0 7 21 23 115 81 66 17 chain 10535 chr20 64444167 + 46188399 46188528 MER85 139 + 0 139 69351 90 0 10 39 chain 16629 chr20 64444167 + 46290270 46290480 MER20 218 + 6 216 60236 77 1 0 4 0 1 128 chain 3458 chr20 64444167 + 46422916 46422988 MLT1N2 510 + 424 497 95562 29 3 2 9 8 0 8 0 10 15 chain 34631 chr20 64444167 + 46560975 46561424 MER4A1 472 + 0 472 38264 100 0 2 120 9 30 220 chain 5153 chr20 64444167 + 46648182 46648262 MER75A 77 + 0 77 84898 12 2 1 46 2 0 18 chain 15845 chr20 64444167 + 46653365 46653565 MER107 203 + 5 203 61231 148 0 1 4 13 10 35 chain 4176 chr20 64444167 + 46740500 46740564 MLT1J 494 + 104 170 90285 21 5 7 38 chain 5365 chr20 64444167 + 46772591 46772659 L1MB3 1562 + 1230 1298 83878 68 chain 12598 chr20 64444167 + 46780238 46780422 MER30 238 + 41 238 65800 62 10 29 6 3 0 52 3 0 48 chain 58379 chr20 64444167 + 46824165 46825067 L1PA14 3548 + 2536 3440 26839 8 0 1 144 1 0 90 13 7 13 5 6 133 3 1 14 2 0 48 5 6 87 1 3 13 14 31 49 0 1 30 1 0 82 1 0 10 0 1 18 1 0 10 8 4 33 4 2 12 1 0 4 2 1 17 1 0 20 0 1 4 chain 4665 chr20 64444167 + 46902862 46902920 MER58B 340 + 269 339 87459 20 0 12 38 chain 3477 chr20 64444167 + 46935990 46936033 Tigger4a 237 - 191 234 95397 43 chain 32096 chr20 64444167 + 47137797 47138148 L1PA3long 6157 + 5805 6156 40277 351 chain 45573 chr20 64444167 + 47199925 47200475 LTR6B 557 + 0 547 31277 48 2 0 219 4 0 133 0 2 102 0 2 16 1 0 25 chain 20275 chr20 64444167 + 47203315 47203675 THE1D 372 + 0 372 56046 90 28 27 18 0 4 17 60 69 147 chain 26153 chr20 64444167 + 47301786 47302146 THE1C 375 + 0 364 47494 138 1 5 40 1 0 37 0 3 22 8 7 97 1 0 15 chain 6121 chr20 64444167 + 47302478 47302589 Tigger4b 360 + 237 358 80655 56 15 21 19 4 8 17 chain 5272 chr20 64444167 + 47307011 47307150 MLT1A0 366 + 0 148 84333 45 61 70 33 chain 4409 chr20 64444167 + 47322956 47323100 MIR 256 + 24 183 88850 15 32 33 46 35 49 16 chain 4691 chr20 64444167 + 47371331 47371407 MER53 195 + 15 90 87316 52 9 8 15 chain 3608 chr20 64444167 + 47477685 47477726 MER4D1 891 + 824 865 94356 41 chain 8131 chr20 64444167 + 47738850 47739199 MLT1C 463 + 88 428 74560 17 42 23 12 1 0 4 75 82 36 83 88 37 1 0 41 chain 21646 chr20 64444167 + 47761800 47762158 THE1B 368 + 0 368 54296 108 7 9 52 1 0 6 0 3 6 55 59 56 0 2 67 chain 35944 chr20 64444167 + 47804199 47804767 LTR9B 643 + 5 613 37443 67 1 3 13 12 23 69 6 28 12 12 13 110 2 1 69 40 38 49 0 7 106 chain 3607 chr20 64444167 + 47886432 47886472 MLT1H2 457 + 77 117 94366 40 chain 3901 chr20 64444167 + 47904347 47904392 U7 62 + 0 45 92108 45 chain 23266 chr20 64444167 + 47920761 47921039 AluSg7 307 + 7 284 51980 125 1 0 152 chain 4702 chr20 64444167 + 48059357 48059413 LTR12C 1709 + 1019 1075 87254 56 chain 4680 chr20 64444167 + 48059430 48059488 LTR12C 1709 + 691 749 87385 58 chain 20072 chr20 64444167 + 48062883 48063238 THE1B 368 + 0 368 56291 47 67 76 46 1 0 28 0 3 14 0 4 14 13 11 125 chain 40330 chr20 64444167 + 48067746 48068186 L1PA2 6032 + 5574 6022 34424 254 0 8 186 chain 3846 chr20 64444167 + 48098175 48098241 MLT1J 494 + 95 162 92523 20 11 12 35 chain 45564 chr20 64444167 + 48157117 48157745 MER41B 635 + 0 633 31280 9 0 4 8 5 6 101 0 1 54 0 10 12 22 12 244 8 7 165 chain 15666 chr20 64444167 + 48293469 48293661 MER2 342 + 144 336 61443 192 chain 38533 chr20 64444167 + 48395624 48396130 LTR10D 510 + 0 510 35685 66 13 21 8 0 1 15 4 0 109 1 0 42 1 0 117 1 2 129 chain 6048 chr20 64444167 + 48413077 48413164 LTR16C 481 + 301 425 80899 21 5 42 61 chain 321945 chr20 64444167 + 48587113 48590788 L1PA4 6152 + 1 5347 6369 579 1 0 118 7 0 136 17 0 402 1 0 324 0 1 102 0 1690 335 0 2 1588 0 4 65 chain 26325 chr20 64444167 + 48775564 48775915 THE1B 368 + 0 368 47234 41 1 16 41 0 3 73 4 3 191 chain 30871 chr20 64444167 + 48869557 48870022 L1PA8 5853 + 5407 5853 41249 157 1 0 44 2 0 52 0 1 14 32 28 5 0 2 30 2 1 19 2 1 85 13 0 7 chain 4691 chr20 64444167 + 48878746 48879083 MLT1K 546 + 139 463 87317 16 10 0 9 17 19 27 207 200 30 8 10 13 chain 17404 chr20 64444167 + 48896191 48896399 L1PA6 6164 + 5951 6160 59345 201 0 1 7 chain 20714 chr20 64444167 + 49092561 49092824 L1PA6 6164 + 5914 6162 55477 107 15 0 141 chain 29602 chr20 64444167 + 49108141 49108470 AluYb8 318 + 0 317 42481 145 12 0 172 chain 44171 chr20 64444167 + 49268492 49269228 L1PA15 4387 + 3642 4366 32038 149 7 36 63 2 0 17 1 0 14 6 0 11 1 0 67 11 0 105 1 0 26 1 0 37 5 4 14 1 0 23 4 0 9 2 1 38 17 14 21 0 2 6 2 0 15 21 14 28 1 0 10 chain 73740 chr20 64444167 + 49293329 49294357 MER11C 1089 + 0 1063 23156 172 0 9 66 0 9 50 0 2 5 2 4 69 1 0 59 1 3 85 46 45 101 0 13 7 1 0 38 0 1 124 1 2 48 1 0 4 1 0 121 0 1 25 chain 6298 chr20 64444167 + 49557616 49558044 MER4C 627 + 3 627 80003 15 44 46 4 1 0 13 1 0 35 257 385 10 0 68 48 chain 13324 chr20 64444167 + 49760168 49760371 MER4D 903 + 0 194 64581 75 1 0 53 21 13 53 chain 9587 chr20 64444167 + 49813535 49813666 MER85 139 + 7 139 71285 87 16 17 28 chain 4605 chr20 64444167 + 49916109 49916166 MIRc 230 + 60 116 87770 52 1 0 4 chain 154657 chr20 64444167 + 49921415 49923118 SVA_D 2077 + 0 2061 12075 725 0 3 33 3 0 123 0 310 163 0 49 39 1 0 616 chain 7521 chr20 64444167 + 49930067 49930159 MER81 114 + 22 114 76075 92 chain 6210 chr20 64444167 + 49958835 49958907 MER65A 464 + 104 177 80320 50 0 1 22 chain 26728 chr20 64444167 + 50362590 50362907 L1PA4 6152 + 5834 6152 46643 143 3 4 171 chain 4205 chr20 64444167 + 50424660 50424711 MER53 195 + 143 194 90087 51 chain 28548 chr20 64444167 + 50437927 50438597 MER41A 554 + 94 459 44041 86 9 10 190 306 0 79 chain 5026 chr20 64444167 + 50453562 50453616 MIRc 230 + 70 124 85541 54 chain 24326 chr20 64444167 + 50477777 50478070 AluSp 311 + 12 299 50295 192 6 0 95 chain 8136 chr20 64444167 + 50563008 50563106 HY3 101 + 0 98 74548 98 chain 3732 chr20 64444167 + 50664233 50664279 MADE1 96 + 50 96 93379 46 chain 4077 chr20 64444167 + 50781105 50781152 L1MB8 1703 + 1435 1482 90905 47 chain 3189 chr20 64444167 + 50781745 50781780 MER5A1 166 + 100 135 97995 35 chain 3357 chr20 64444167 + 50790242 50790281 MIR 256 + 192 231 96506 39 chain 32967 chr20 64444167 + 51043798 51044629 Tigger3c 601 + 34 579 39538 79 30 35 142 1 0 5 330 24 26 14 28 145 0 2 59 chain 26251 chr20 64444167 + 51079751 51080119 THE1C 375 + 0 375 47351 107 23 27 65 6 9 70 0 1 71 1 0 25 chain 20561 chr20 64444167 + 51093986 51094286 AluSg4 309 + 9 297 55694 39 1 0 83 22 9 129 6 8 20 chain 3289 chr20 64444167 + 51162706 51162742 MIR 256 + 105 141 97108 36 chain 28515 chr20 64444167 + 51210556 51210925 THE1C 375 + 2 374 44096 4 0 1 4 1 0 175 2 0 40 0 5 47 0 1 69 1 0 26 chain 27001 chr20 64444167 + 51217928 51218253 HERVL-int 5654 + 4707 5033 46272 8 0 1 317 chain 8252 chr20 64444167 + 51246437 51246648 MLT1A 405 + 214 404 74280 21 81 59 86 7 8 16 chain 3468 chr20 64444167 + 51286316 51286387 MER102c 337 + 237 305 95473 34 21 18 16 chain 6877 chr20 64444167 + 51342408 51342531 MER30 238 + 125 236 78045 7 9 0 67 13 10 27 chain 3322 chr20 64444167 + 51377681 51377865 MLT1C 463 + 210 409 96834 36 132 147 16 chain 4994 chr20 64444167 + 51555940 51556001 MLT1C 463 + 63 124 85687 61 chain 27773 chr20 64444167 + 51568509 51568864 THE1B 368 + 0 368 45223 40 0 15 110 8 7 121 1 0 75 chain 65321 chr20 64444167 + 51685599 51686375 L1PA5 6144 + 5329 6144 25103 9 0 38 618 0 1 149 chain 107682 chr20 64444167 + 51721828 51723389 L1PB1 5432 + 3955 5420 17363 260 1 0 90 1 0 321 3 0 250 0 4 61 0 1 24 0 1 47 0 2 46 70 5 36 1 2 9 3 0 24 1 0 9 16 11 11 3 1 50 2 1 16 1 0 43 1 0 16 1 0 6 40 26 4 1 0 14 2 0 24 1 0 21 1 0 9 5 4 16 chain 44925 chr20 64444167 + 51778211 51778738 MER41A 554 + 2 534 31619 466 0 5 61 chain 22952 chr20 64444167 + 51826679 51826962 AluSp 311 + 16 298 52435 39 0 1 186 2 0 56 chain 3181 chr20 64444167 + 51865448 51865486 MER5B 177 + 125 163 98071 38 chain 5196 chr20 64444167 + 51904969 51905030 U7 62 + 1 62 84693 61 chain 2957 chr20 64444167 + 51909836 51909871 L1MD3 1191 + 1015 1050 100302 35 chain 23970 chr20 64444167 + 51969452 51969769 AluSp 311 + 0 311 50836 63 0 4 213 11 1 30 chain 30687 chr20 64444167 + 51978107 51978522 MER61E 571 + 0 389 41395 133 27 0 72 0 1 183 chain 4010 chr20 64444167 + 52006923 52006988 MER96B 391 + 46 110 91379 13 6 5 46 chain 24774 chr20 64444167 + 52033735 52034079 THE1B 368 + 0 368 49626 40 0 15 85 0 4 42 5 9 88 8 9 76 chain 9885 chr20 64444167 + 52105462 52105580 MER5A1 166 + 44 162 70652 118 chain 25761 chr20 64444167 + 52123309 52123661 Tigger1 2417 + 1950 2302 48080 100 5 4 61 1 4 137 2 0 46 chain 20113 chr20 64444167 + 52131320 52131615 L1M1 2793 + 2312 2612 56246 24 0 3 33 2 0 45 17 16 51 1 5 33 0 1 89 chain 50591 chr20 64444167 + 52146175 52146731 L1PA3long 6157 + 5592 6149 29352 48 1 2 507 chain 14098 chr20 64444167 + 52258054 52258246 MSTA 426 + 0 199 63458 8 6 0 131 0 9 30 0 4 17 chain 9797 chr20 64444167 + 52272167 52272281 L1PA16 3655 + 3464 3578 70827 114 chain 12812 chr20 64444167 + 52299627 52299785 FAM 185 + 4 162 65425 158 chain 21420 chr20 64444167 + 52299870 52300146 L1PA8 5853 + 5583 5853 54612 25 2 0 71 1 0 9 1 0 52 2 1 19 1 0 93 chain 43200 chr20 64444167 + 52302059 52302612 MER41A 554 + 0 554 32648 84 11 12 458 chain 4269 chr20 64444167 + 52343970 52344123 MER58A 224 + 58 206 89712 27 13 14 14 66 60 33 chain 30549 chr20 64444167 + 52386295 52386752 MER1A 529 + 0 524 41525 25 15 14 97 16 88 219 21 17 64 chain 43362 chr20 64444167 + 52398663 52399371 L1PB1 5432 + 4747 5427 32532 50 0 9 9 8 1 287 1 2 8 4 1 26 4 6 12 5 1 8 2 0 53 2 1 15 1 0 45 1 0 15 1 0 6 16 6 19 7 4 15 2 0 14 11 10 21 1 0 13 1 0 14 1 0 5 1 0 4 chain 3229 chr20 64444167 + 52427903 52427937 MLT1H 522 + 136 170 97674 34 chain 2964 chr20 64444167 + 52452388 52452466 MER5A1 166 + 84 161 100260 32 33 32 13 chain 19224 chr20 64444167 + 52459650 52459889 L1PA16 3655 + 3221 3459 57320 70 2 0 132 0 1 35 chain 7050 chr20 64444167 + 52460115 52460224 MER63A 208 + 78 207 77444 76 12 32 21 chain 6917 chr20 64444167 + 52487106 52487259 Tigger3a 397 + 158 311 77894 35 58 58 60 chain 59192 chr20 64444167 + 52491241 52491967 L1PA7 6471 + 5746 6456 26608 39 21 5 303 0 1 42 0 1 186 0 1 4 1 0 68 4 2 58 chain 18948 chr20 64444167 + 52510810 52511214 L1PB1 5432 + 5059 5423 57597 44 6 2 12 8 5 16 6 1 9 0 3 7 5 1 8 3 1 54 1 0 14 1 0 45 1 0 15 14 1 30 7 4 13 7 5 21 1 0 21 1 0 13 1 0 14 1 0 5 chain 4251 chr20 64444167 + 52526206 52526360 MER58A 224 + 47 205 89821 30 51 53 12 27 29 34 chain 43544 chr20 64444167 + 52531837 52532347 L1PA6 6164 + 5641 6162 32418 191 0 1 121 1 11 197 chain 505390 chr20 64444167 + 52542948 52549055 L1PA5 6144 + 0 5768 2948 248 0 5 621 0 1 294 9 0 66 1 0 588 315 0 352 0 2 136 2 1 965 0 1 1348 1 0 124 22 0 283 0 1 732 chain 2650 chr20 64444167 + 52575200 52575284 L1MC2 1988 + 1904 1979 102720 15 43 34 26 chain 4980 chr20 64444167 + 52585461 52585598 MER58A 224 + 4 135 85751 36 8 10 33 45 37 15 chain 39869 chr20 64444167 + 52627762 52628251 L1PA7 6471 + 5983 6469 34762 296 0 1 27 2 0 5 2 0 18 1 2 84 0 1 42 2 0 10 chain 18486 chr20 64444167 + 52629502 52629802 THE1B 368 + 0 306 58119 169 1 0 21 7 10 9 1 5 18 4 3 7 1 0 30 13 15 19 chain 18148 chr20 64444167 + 52640921 52641126 L1PA4 6152 + 5936 6141 58509 205 chain 31643 chr20 64444167 + 52876625 52876980 L1PA4 6152 + 5796 6152 40632 347 0 1 8 chain 6229 chr20 64444167 + 52928823 52928956 MER5A 189 + 6 140 80241 63 42 43 28 chain 12463 chr20 64444167 + 52932329 52932485 L1PA8 5853 + 5699 5853 66045 41 2 1 19 1 0 93 chain 6393 chr20 64444167 + 53021267 53021345 MER5A 189 + 30 108 79695 78 chain 19835 chr20 64444167 + 53097652 53097895 7SK 245 + 1 245 56626 226 0 1 17 chain 2935 chr20 64444167 + 53150535 53150571 MER58D 378 + 323 359 100543 36 chain 4010 chr20 64444167 + 53164497 53164547 MER3 215 + 1 51 91375 50 chain 10066 chr20 64444167 + 53269702 53269810 L1HS 6032 + 5924 6032 70268 108 chain 21701 chr20 64444167 + 53273998 53274272 AluSc5 308 + 0 283 54222 91 12 21 171 chain 20786 chr20 64444167 + 53293745 53294024 AluSc5 308 + 10 287 55386 132 3 0 5 5 8 78 6 4 50 chain 107846 chr20 64444167 + 53396919 53398136 L1PA5 6144 + 4927 6140 17345 983 5 1 229 chain 20811 chr20 64444167 + 53429332 53429677 THE1B 368 + 0 368 55346 35 5 20 117 2 1 19 47 57 38 6 5 76 chain 551338 chr20 64444167 + 53472644 53478652 L1PA2 6032 + 0 6009 648 74 0 1 182 1 0 10 0 1 5741 chain 557065 chr20 64444167 + 53503851 53509874 L1PA2 6032 + 3 6030 294 5157 0 4 866 chain 5139 chr20 64444167 + 53514492 53514563 L1MA4 2864 + 2740 2809 84967 26 2 0 43 chain 29591 chr20 64444167 + 53523746 53524146 L1PA8 5853 + 5458 5853 42492 12 0 1 50 1 0 43 1 0 45 2 0 70 1 0 9 1 0 6 0 1 48 1 0 14 7 6 41 0 1 48 chain 7720 chr20 64444167 + 53544624 53544723 HY1 111 + 10 111 75559 72 0 2 27 chain 5334 chr20 64444167 + 53693034 53693213 L1PB1 5432 + 5263 5422 84039 16 1 0 17 2 0 6 16 6 17 37 32 13 1 0 17 18 17 18 chain 7107 chr20 64444167 + 53733931 53734156 MLT1C 463 + 191 434 77240 6 4 0 19 113 135 83 chain 3197 chr20 64444167 + 53784125 53784177 L1ME1 1623 + 1437 1483 97916 9 6 0 37 chain 6178 chr20 64444167 + 53785708 53785783 MER2 342 + 261 336 80430 75 chain 6943 chr20 64444167 + 53803141 53803240 MER63D 473 + 40 142 77800 55 3 6 41 chain 126236 chr20 64444167 + 53853781 53855225 SVA_D 2077 + 7 2071 14518 12 5 6 11 8 0 340 0 4 135 0 2 75 1 41 54 0 40 181 0 537 531 0 4 91 chain 20898 chr20 64444167 + 53965975 53966264 L1PB2 3958 + 3554 3838 55256 63 1 0 55 10 9 74 3 1 19 1 0 63 chain 3278 chr20 64444167 + 53968227 53968267 MER58C 217 + 154 194 97206 40 chain 39570 chr20 64444167 + 53973856 53974414 LTR12 884 + 0 650 34980 21 4 3 31 0 107 83 40 0 72 0 25 36 2 0 256 0 3 13 chain 9108 chr20 64444167 + 53978152 53978255 L1PA3long 6157 + 5800 5903 72331 103 chain 140505 chr20 64444167 + 54033003 54034992 L1PA13 3608 + 1571 3548 13056 92 0 1 85 0 1 168 20 17 26 4 8 279 2 1 157 8 13 7 1 0 107 1 14 6 0 1 550 12 0 7 0 12 9 1 0 27 2 1 113 2 0 60 7 6 47 3 1 9 9 7 40 2 0 5 2 0 17 1 0 23 6 3 13 5 0 14 1 0 4 11 5 8 1 0 6 2 0 7 chain 10460 chr20 64444167 + 54085801 54085929 MER85 139 + 0 139 69496 95 0 11 33 chain 3613 chr20 64444167 + 54141507 54141605 MER20 218 + 29 129 94324 14 43 45 41 chain 7671 chr20 64444167 + 54148841 54148933 AluSc 308 + 17 109 75699 92 chain 303985 chr20 64444167 + 54240042 54243518 L1PA4 6152 + 2019 5517 6743 1497 2 0 94 0 1 602 0 1 345 0 1 78 0 5 43 0 11 601 1 5 41 0 1 172 chain 10232 chr20 64444167 + 54260783 54260988 MER44A 345 + 105 319 69940 6 4 0 37 0 9 72 52 56 34 chain 18085 chr20 64444167 + 54270809 54271015 L1PA4 6152 + 5944 6151 58571 59 0 1 147 chain 42490 chr20 64444167 + 54290685 54291302 MER41B 635 + 0 635 33068 74 1 0 25 0 1 25 1 2 199 4 3 6 0 1 44 10 8 63 22 38 6 0 3 13 0 1 95 2 1 27 chain 13655 chr20 64444167 + 54335907 54336156 L1PA16 3655 + 1757 1993 64079 38 1 0 67 28 30 32 18 3 13 3 4 49 chain 27113 chr20 64444167 + 54344195 54344515 L1PA4 6152 + 5823 6143 46105 173 7 0 8 1 8 131 chain 18860 chr20 64444167 + 54403124 54403337 L1PA2 6032 + 5818 6032 57699 68 0 1 145 chain 31993 chr20 64444167 + 54426184 54426796 L1PB1 5432 + 4905 5423 40349 193 6 1 17 60 1 20 1 0 5 34 27 49 5 4 14 1 0 44 1 0 16 3 0 15 8 0 15 24 20 24 1 0 22 1 0 12 1 0 14 1 0 5 chain 179 chr20 64444167 + 54451736 54451776 MER67A 545 + 0 40 85989 40 chain 9225 chr20 64444167 + 54451780 54451914 MER50 708 + 0 128 72071 44 0 3 6 8 0 5 1 0 70 chain 179 chr20 64444167 + 54452799 54452839 MER67A 545 + 40 80 85989 40 chain 27307 chr20 64444167 + 54462170 54462528 THE1A 353 + 0 353 45818 109 6 5 67 2 0 17 1 0 83 1 0 72 chain 42333 chr20 64444167 + 54480148 54480680 MER41A 554 + 0 533 33169 247 8 0 58 0 3 122 0 1 38 7 12 52 chain 3262 chr20 64444167 + 54537790 54537826 MER6B 211 + 32 68 97361 36 chain 12024 chr20 64444167 + 54660426 54660604 MER4A1_ 611 + 418 598 66810 117 19 17 21 0 4 21 chain 22319 chr20 64444167 + 54718740 54718987 L1PA2 6032 + 5785 6032 53383 247 chain 21966 chr20 64444167 + 54731817 54732105 AluSq4 311 + 10 295 53887 42 12 8 71 0 1 163 chain 6273 chr20 64444167 + 54748727 54748808 Tigger5 388 + 136 217 80085 81 chain 11668 chr20 64444167 + 54750544 54751192 MER72 723 + 456 723 67449 20 5 6 42 406 22 15 56 58 104 chain 331895 chr20 64444167 + 54753486 54757271 L1PA5 6144 + 2333 6131 6184 426 0 5 364 0 5 43 2 0 506 2 0 494 7 8 642 0 5 500 0 1 799 chain 26318 chr20 64444167 + 54768117 54768480 THE1B 368 + 0 367 47243 37 1 6 65 1 2 62 7 6 116 1 0 73 chain 526836 chr20 64444167 + 54782512 54788349 L1PA3long 6157 + 0 5981 1963 781 0 128 140 0 2 138 5 8 515 0 1 1502 1 0 48 0 4 517 0 1 1362 0 1 38 0 1 122 1 5 73 1 2 53 1 0 539 chain 127939 chr20 64444167 + 54814759 54816332 L1PA7 6471 + 4889 6469 14286 76 15 14 489 1 0 36 5 11 108 0 5 492 1 2 6 4 0 168 13 14 159 chain 262061 chr20 64444167 + 54900747 54903871 L1PA5 6144 + 2966 6139 7905 210 7 6 234 4 0 11 4 5 120 11 4 42 4 26 30 1 0 23 3 1 658 0 8 69 0 1 69 8 0 654 0 9 198 1 23 237 0 8 109 1 3 248 9 8 17 1 0 90 0 1 51 chain 70450 chr20 64444167 + 54906320 54907132 L1PA4 6152 + 5337 6152 23880 318 0 3 334 6 0 4 0 6 150 chain 102742 chr20 64444167 + 54933833 54934961 L1PA3long 6157 + 5010 6142 17981 300 0 4 828 chain 29299 chr20 64444167 + 55040511 55040865 THE1A 353 + 0 353 42897 110 1 0 243 chain 120320 chr20 64444167 + 55040865 55042398 THE1A-int 1579 + 0 1574 15478 112 7 8 341 1 2 20 28 23 487 5 7 111 0 27 109 3 18 309 chain 60514 chr20 64444167 + 55171004 55171680 L1PA4 6152 + 4846 5522 26229 676 chain 16462 chr20 64444167 + 55241487 55241668 L1PA3long 6157 + 5976 6157 60434 181 chain 345277 chr20 64444167 + 55244674 55249393 L1PA8 5853 + 1402 5852 5979 343 6 7 220 0 1 29 0 2 14 0 1 67 4 7 521 0 1 152 10 8 184 0 5 147 0 2 5 2 0 544 0 2 106 0 1 871 1 2 90 0 1 265 1 3 21 0 9 54 3 0 94 299 1 382 1 0 44 6 4 75 27 35 15 8 7 108 chain 7066 chr20 64444167 + 55255561 55255654 MER87B 500 + 349 445 77385 46 0 3 47 chain 441086 chr20 64444167 + 55305628 55311327 L1PA8A 6298 + 560 6291 4553 248 21 17 27 0 6 67 2 3 25 0 1 48 4 5 93 0 4 65 1 0 871 1 0 349 0 2 39 2 0 5 0 2 14 0 6 43 2 1 464 0 4 199 10 17 133 0 4 21 24 21 75 1 8 114 2 10 134 0 1 121 27 4 44 0 5 529 0 1 4 3 2 148 0 1 119 2 1 14 1 0 84 0 5 13 0 1 240 0 5 442 4 1 173 1 2 626 chain 197078 chr20 64444167 + 55348966 55351216 HERV17-int 4347 + 1729 3975 9806 988 7 2 200 1 2 1054 chain 28016 chr20 64444167 + 55352725 55353051 LTR17 781 + 0 326 44841 326 chain 71607 chr20 64444167 + 55356083 55356926 L1PA7 6471 + 5623 6470 23636 77 0 2 478 0 3 124 4 3 160 chain 35067 chr20 64444167 + 55412337 55412718 L1PA2 6032 + 5636 6022 37975 139 0 1 198 0 4 44 chain 11177 chr20 64444167 + 55462472 55462620 MER1A 529 + 378 525 68289 79 3 2 66 chain 10213 chr20 64444167 + 55568503 55568611 L1PA3long 6157 - 432 540 69423 108 chain 33583 chr20 64444167 + 55568611 55568995 L1PA3long 6157 + 5771 6155 39017 133 2 1 109 0 1 140 chain 24692 chr20 64444167 + 55581306 55581604 L1PA7 6471 + 6169 6467 49746 298 chain 19212 chr20 64444167 + 55619013 55619482 L1PB1 5432 + 5006 5418 57335 91 44 17 13 38 32 8 2 0 29 7 8 16 6 5 12 1 0 42 2 1 16 1 0 4 2 0 11 9 0 16 3 1 4 1 0 10 15 13 15 1 0 21 1 0 13 1 0 14 chain 27907 chr20 64444167 + 55654052 55654396 L1P1 4361 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55911043 L1PA6 6164 + 5529 6156 28369 486 0 1 140 chain 6441 chr20 64444167 + 55911123 55911217 MLT1D 503 + 408 503 79541 50 2 3 42 chain 37744 chr20 64444167 + 55936770 55937262 MLT2A2 560 + 17 552 36244 166 1 0 125 0 32 59 5 16 75 0 1 61 chain 512513 chr20 64444167 + 56049570 56055985 L1PA7 6471 + 0 6428 2643 164 0 5 50 0 1 5 38 37 13 29 30 25 0 6 66 2 0 1 7 0 286 51 37 178 11 0 333 0 4 511 8 39 244 1 0 100 1 2 4 1 0 494 7 0 351 14 0 110 0 4 107 4 0 239 0 4 80 3 0 17 4 8 1182 1 0 671 0 1 88 9 1 123 0 3 386 2 1 131 0 23 263 chain 69553 chr20 64444167 + 56063197 56064023 L1PA7 6471 + 5178 6004 24109 442 2 1 79 0 2 8 1 0 294 chain 36944 chr20 64444167 + 56064025 56064452 L1PA7 6471 + 6021 6447 36778 288 1 0 138 chain 36210 chr20 64444167 + 56082756 56083148 L1PA2 6032 + 4949 5341 37264 392 chain 158741 chr20 64444167 + 56107999 56109730 L1PA3long 6157 + 4425 6156 11826 1731 chain 31476 chr20 64444167 + 56172517 56172965 MER57A1 433 + 0 430 40751 243 0 1 32 0 1 5 60 40 108 chain 15834 chr20 64444167 + 56188609 56188852 L1PB2 3958 + 3573 3838 61243 47 1 0 36 7 29 43 2 3 22 2 0 13 0 3 6 1 0 63 chain 2902 chr20 64444167 + 56200644 56200678 MamGypLTR3 363 + 205 239 100836 34 chain 7767 chr20 64444167 + 56211585 56211679 MLT1B 390 + 286 380 75443 94 chain 57087 chr20 64444167 + 56215604 56216358 MER4E 760 + 0 750 27241 24 2 0 142 1 0 5 13 7 97 0 4 92 13 8 9 1 3 55 1 0 5 1 6 293 chain 32482 chr20 64444167 + 56221233 56221699 LTR10A 586 + 49 564 39959 13 4 5 7 0 1 65 21 48 20 8 18 41 0 10 47 1 0 193 0 1 46 chain 5731 chr20 64444167 + 56221933 56222016 MER41B 635 + 516 604 82217 22 0 1 35 4 8 22 chain 47334 chr20 64444167 + 56228272 56228824 MER41A 554 + 0 554 30528 30 0 1 396 0 1 126 chain 26531 chr20 64444167 + 56236340 56236686 THE1A 353 + 0 343 46929 105 6 5 92 2 0 141 chain 92202 chr20 64444167 + 56240311 56241372 L1PA5 6144 + 4447 5504 19311 641 4 1 205 1 0 210 chain 4813 chr20 64444167 + 56274083 56274161 MER52-int 3354 + 3216 3289 86638 7 1 0 7 1 0 17 1 0 30 1 0 6 1 0 6 chain 2662 chr20 64444167 + 56277725 56277796 MER52A 1651 + 851 918 102654 6 1 0 17 19 16 28 chain 3259 chr20 64444167 + 56293311 56293349 Charlie2b 853 + 728 766 97383 38 chain 25863 chr20 64444167 + 56300004 56300312 AluSp 311 + 1 311 47920 40 6 8 262 chain 43397 chr20 64444167 + 56309334 56309807 L1PA3long 6157 + 5684 6157 32512 473 chain 15973 chr20 64444167 + 56312155 56312445 THE1B 368 + 0 306 61060 109 16 26 42 60 66 63 chain 5908 chr20 64444167 + 56314878 56314950 MLT1E3 631 + 559 631 81452 72 chain 295113 chr20 64444167 + 56315695 56320059 L1PBa1 4058 + 10 4016 6981 26 1 0 12 3 1 6 1 0 81 6 8 99 24 23 28 1 0 135 13 11 176 64 54 85 0 2 25 1 4 320 1 0 22 15 16 141 26 0 358 0 1 14 7 6 28 1 0 761 8 0 122 306 0 27 0 4 49 0 1 35 1 0 14 7 29 44 5 0 170 0 10 346 2 0 5 1 3 123 1 0 115 20 10 105 1 0 7 1 0 28 8 7 32 8 6 105 3 1 17 2 1 14 7 0 12 10 9 10 2 1 4 1 0 22 1 0 12 17 10 5 0 2 11 1 0 17 1 0 18 chain 12338 chr20 64444167 + 56321644 56321904 L1PB1 5432 + 5158 5391 66239 9 2 0 53 19 17 43 1 0 15 3 0 8 15 6 12 14 11 6 4 0 8 2 0 24 1 0 21 chain 432046 chr20 64444167 + 56336484 56341931 L1P2 5180 + 8 5178 4721 141 1 0 45 1 0 53 12 12 256 1 0 50 1 0 219 5 4 5 1 0 318 3 19 1001 306 0 41 1 0 651 0 1 395 0 4 33 0 3 1047 0 15 769 1 0 46 1 0 38 1 0 4 chain 24691 chr20 64444167 + 56413398 56413699 AluSz6 309 + 8 309 49751 301 chain 66087 chr20 64444167 + 56448862 56449615 L1PA5 6144 + 5387 6138 24942 610 2 0 141 chain 31067 chr20 64444167 + 56548757 56549162 MSTA 426 + 0 407 41075 194 18 20 193 chain 47244 chr20 64444167 + 56552036 56552576 MER41A 554 + 13 554 30556 417 0 1 123 chain 22777 chr20 64444167 + 56588202 56588477 AluSc 308 + 19 295 52707 103 0 1 172 chain 4593 chr20 64444167 + 56703816 56703963 MER58A 224 + 47 194 87830 35 1 0 9 74 75 28 chain 5055 chr20 64444167 + 56718886 56718966 MADE1 96 + 0 96 85384 21 12 28 47 chain 28432 chr20 64444167 + 56720679 56721097 MLT2A1 477 + 0 477 44221 42 6 8 25 9 14 50 0 1 28 5 9 18 1 0 9 0 1 179 0 44 30 1 0 9 0 4 6 chain 3475 chr20 64444167 + 56781396 56781436 MER20 218 + 33 73 95412 40 chain 39330 chr20 64444167 + 56831285 56831839 MER41A 554 + 0 554 35130 45 1 2 49 0 1 107 24 25 107 8 5 32 1 0 23 5 6 152 chain 2990 chr20 64444167 + 56833096 56833149 MIR 256 + 95 150 99948 24 9 11 20 chain 52498 chr20 64444167 + 56878865 56879488 L1PA7 6471 + 5791 6454 28735 14 1 0 150 0 1 221 1 0 147 0 41 89 chain 44757 chr20 64444167 + 56886737 56887630 MER41A 554 + 0 554 31716 21 0 3 125 342 0 405 chain 6373 chr20 64444167 + 57135516 57135612 MER96B 391 + 226 319 79768 46 2 1 22 2 0 24 chain 25709 chr20 64444167 + 57264757 57265060 AluSp 311 + 11 311 48153 26 3 0 274 chain 2588 chr20 64444167 + 57273533 57273563 MER53 195 - 28 58 103070 30 chain 22256 chr20 64444167 + 57303306 57303656 THE1C 375 + 0 336 53470 46 15 0 54 3 4 20 1 21 8 20 0 27 0 1 6 1 0 149 chain 6870 chr20 64444167 + 57311867 57311949 HY3 101 + 11 93 78068 82 chain 113267 chr20 64444167 + 57348213 57349645 LTR12C 1709 + 0 1709 16639 121 0 1 4 1 0 380 9 8 186 0 200 171 0 47 106 0 4 121 13 42 125 2 0 34 8 9 54 13 12 84 chain 6451 chr20 64444167 + 57444197 57444268 PRIMA4_LTR 623 + 272 343 79513 71 chain 4226 chr20 64444167 + 57466955 57467027 MER20 218 + 0 75 89963 15 14 17 43 chain 72978 chr20 64444167 + 57486065 57487169 L1PB2 3958 + 2741 3837 23319 56 13 13 75 33 33 5 1 0 384 15 13 43 1 0 11 5 0 79 1 0 92 2 3 46 0 3 20 1 0 5 20 23 36 1 0 72 2 0 21 6 5 58 chain 47069 chr20 64444167 + 57535972 57536537 LTR19B 566 + 0 566 30624 159 1 0 12 0 1 341 0 1 52 chain 4148 chr20 64444167 + 57596549 57596596 MIR 256 + 73 120 90472 47 chain 122250 chr20 64444167 + 57628619 57630103 LTR12C 1709 + 0 1709 15152 41 0 1 173 4 11 173 0 5 32 0 1 226 0 119 55 1 0 132 0 41 61 0 47 101 0 1 4 0 4 481 chain 105362 chr20 64444167 + 57644681 57646068 THE1B-int 1605 + 143 1605 17634 287 0 25 90 9 10 48 5 36 241 0 20 237 13 15 418 10 6 29 chain 6400 chr20 64444167 + 57677653 57677826 L1MD2 1676 + 1163 1315 79673 43 6 5 44 66 46 14 chain 3780 chr20 64444167 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0 1 30 0 4 151 1 0 71 1 0 6 chain 6780 chr20 64444167 + 58773112 58773270 L1MC5 759 + 208 353 78381 4 1 0 68 57 45 28 chain 9393 chr20 64444167 + 58849075 58849223 MER20 218 + 22 175 71720 51 8 13 5 1 0 61 7 8 15 chain 91422 chr20 64444167 + 58948419 58949626 HSMAR1 1287 + 61 1284 19431 10 0 4 45 11 7 35 4 3 108 0 9 414 0 3 83 0 1 132 10 11 312 0 2 7 0 1 36 chain 32980 chr20 64444167 + 58954115 58955141 L1PB1 5432 + 4763 5430 39531 34 5 1 6 0 10 8 4 0 100 0 1 84 451 107 24 8 6 14 5 1 9 2 0 52 2 1 15 1 0 45 1 0 4 21 23 16 2 0 8 1 0 14 2 0 15 0 1 11 1 0 20 1 0 12 1 0 17 1 0 4 1 0 4 chain 24892 chr20 64444167 + 59059970 59060362 L1PA8 5853 + 5474 5853 49452 7 6 0 83 1 0 45 2 0 69 20 17 45 2 1 10 10 9 68 9 10 15 chain 24832 chr20 64444167 + 59081708 59081980 L1PA4 6152 + 5878 6151 49537 160 0 1 112 chain 29514 chr20 64444167 + 59148399 59148709 AluYg6 310 + 0 310 42589 310 chain 2660 chr20 64444167 + 59177401 59177441 L2a 937 + 642 681 102662 19 3 2 18 chain 19969 chr20 64444167 + 59210856 59211069 AluYb8 318 + 105 318 56440 213 chain 33181 chr20 64444167 + 59409239 59409723 MER1A 529 + 2 529 39375 82 19 59 314 30 33 39 chain 21307 chr20 64444167 + 59463832 59464209 THE1D 372 + 0 372 54755 51 9 0 15 40 42 58 32 34 25 1 0 129 0 1 17 chain 32585 chr20 64444167 + 59476556 59477342 MER4A 717 + 0 707 39884 70 0 15 8 182 23 58 10 89 10 0 2 62 0 17 35 8 18 15 60 18 18 7 14 21 5 0 121 4 0 27 12 13 53 chain 4820 chr20 64444167 + 59560258 59560338 MER53 195 + 8 89 86596 56 8 9 16 chain 7949 chr20 64444167 + 59570477 59570592 MER2 342 + 86 211 75001 24 1 0 38 5 16 47 chain 36688 chr20 64444167 + 59633166 59633611 L1PA8A 6298 + 5842 6291 36960 18 0 3 316 6 7 105 chain 16412 chr20 64444167 + 59680562 59680776 MER30 238 + 0 238 60503 100 0 27 71 3 0 40 chain 18839 chr20 64444167 + 59760351 59760710 THE1B 368 + 1 366 57727 67 0 14 11 14 0 15 14 15 52 37 34 4 0 1 14 6 14 64 7 6 54 chain 48391 chr20 64444167 + 59855589 59856122 L1PA4 6152 + 4660 5192 30155 61 1 0 471 chain 58403 chr20 64444167 + 59889869 59890550 L1PA7 6471 + 5772 6462 26836 87 0 3 35 0 5 199 1 2 359 chain 46903 chr20 64444167 + 59898143 59898703 L1PA7 6471 + 5885 6452 30700 60 1 0 191 0 1 116 1 8 191 chain 45601 chr20 64444167 + 60032515 60033011 L1PA2 6032 + 5536 6032 31261 496 chain 19205 chr20 64444167 + 60109525 60109947 Tigger3b 1229 + 791 1206 57345 21 10 11 169 0 10 10 1 5 34 0 2 12 134 110 31 chain 4319 chr20 64444167 + 60114148 60114307 MLT1C 463 + 57 221 89365 43 7 8 13 79 83 17 chain 7905 chr20 64444167 + 60226228 60226358 MER2 342 + 157 320 75099 89 22 55 19 chain 28836 chr20 64444167 + 60351670 60351983 AluYb8 318 + 0 313 43579 123 1 0 106 0 1 83 chain 4453 chr20 64444167 + 60356808 60356880 MLT2A1 477 + 138 207 88594 31 4 1 9 0 1 23 1 0 4 chain 11669 chr20 64444167 + 60434359 60434681 THE1D 372 + 19 357 67446 18 18 9 28 3 0 6 19 23 24 5 9 30 31 41 17 1 0 20 5 20 20 0 1 27 30 25 20 chain 3368 chr20 64444167 + 60450371 60450470 MER67D 511 + 392 481 96404 26 49 39 24 chain 142512 chr20 64444167 + 60514076 60515659 L1PA2 6032 + 4444 6029 12889 346 0 1 621 1 2 615 chain 67509 chr20 64444167 + 60524462 60525246 L1PA7 6471 + 5683 6470 24564 26 0 1 431 0 5 306 1 0 13 2 0 5 chain 36815 chr20 64444167 + 60531692 60532127 L1PA6 6164 + 5718 6160 36874 292 2 9 141 chain 36805 chr20 64444167 + 60578681 60579142 LTR2 463 + 0 463 36880 269 0 1 92 12 13 88 chain 26638 chr20 64444167 + 60665382 60666082 L1PB1 5432 + 4939 5427 46776 159 192 11 4 0 1 24 1 0 9 1 0 9 2 0 3 2 0 8 2 0 53 2 1 16 1 0 40 6 5 14 2 0 6 62 47 21 1 0 17 9 8 9 1 0 19 1 0 4 chain 82981 chr20 64444167 + 60708008 60708931 L1PA3long 6157 + 5218 6146 21021 70 0 4 839 1 2 13 chain 43419 chr20 64444167 + 60862142 60862625 L1PA4 6152 + 5668 6151 32491 483 chain 2838 chr20 64444167 + 61156793 61156823 MLT1D 503 + 405 435 101340 30 chain 3107 chr20 64444167 + 61244006 61244115 L1MC2 1988 + 1889 1983 98719 15 60 45 34 chain 3770 chr20 64444167 + 61374583 61374632 MER4B 649 + 0 47 93061 25 2 0 22 chain 5131 chr20 64444167 + 61561621 61561776 MER58A 224 + 37 208 85015 50 79 95 26 chain 19603 chr20 64444167 + 61568183 61568504 THE1C 375 + 12 341 56903 55 1 15 8 14 0 18 6 7 23 1 5 38 19 18 103 0 4 35 chain 5515 chr20 64444167 + 61575616 61575681 MER58A 224 + 42 107 83180 65 chain 2970 chr20 64444167 + 61674876 61674910 MER58A 224 + 50 84 100198 34 chain 6787 chr20 64444167 + 61960127 61960245 MER51E 476 + 364 476 78364 21 30 0 21 0 24 46 chain 30185 chr20 64444167 + 61995582 61995896 AluYb9 318 + 1 315 41865 314 chain 59387 chr20 64444167 + 62071087 62071758 L1PA5 6144 + 4662 5338 26542 206 0 4 336 3 0 83 0 4 43 chain 40145 chr20 64444167 + 62072969 62073510 MLT2A2 560 + 0 552 34561 221 13 15 70 9 14 204 0 4 24 chain 4875 chr20 64444167 + 62093268 62093326 MLT1A0-int 1658 + 1356 1414 86293 58 chain 8032 chr20 64444167 + 62158401 62158497 Tigger4a 237 + 40 136 74801 96 chain 23468 chr20 64444167 + 62180618 62180899 AluSp 311 + 5 286 51637 281 chain 22477 chr20 64444167 + 62380296 62380557 AluY 311 + 33 295 53151 99 0 1 162 chain 2820 chr20 64444167 + 62587414 62587444 MER70B 575 + 48 78 101527 30 chain 3841 chr20 64444167 + 62749079 62749157 L1MA9 1812 + 905 986 92556 17 22 25 39 chain 29826 chr20 64444167 + 62781726 62782618 MER51A 677 + 5 677 42211 18 1 3 31 14 7 75 0 15 23 404 176 10 0 1 60 3 4 33 0 1 51 1 0 9 6 14 28 0 1 74 5 6 19 14 0 13 chain 2525 chr20 64444167 + 62781888 62781916 MER51A 677 + 384 412 103528 28 chain 82432 chr20 64444167 + 62873548 62874539 LTR13 1007 + 0 1007 21144 68 2 0 93 7 21 199 4 5 302 8 0 11 0 11 297 chain 4744 chr20 64444167 + 63212814 63212885 MER20 218 + 91 161 86991 21 5 4 45 chain 4284 chr20 64444167 + 63337354 63337424 U6 107 + 13 82 89603 50 8 7 12 chain 54388 chr20 64444167 + 63340797 63341519 MER4E 760 + 2 750 28089 18 2 3 147 13 9 85 0 1 20 0 4 74 1 3 36 1 0 109 0 21 53 0 1 51 0 1 112 chain 5012 chr20 64444167 + 63437078 63437166 Tigger1 2417 + 2296 2387 85604 60 16 19 12 chain 79799 chr20 64444167 + 63614067 63615091 LTR13 1007 + 0 1007 21663 70 2 0 111 30 8 192 4 5 313 0 2 111 0 1 22 0 3 72 1 0 10 0 2 53 2 1 31 chain 101595 chr20 64444167 + 63800379 63801824 LTR12C 1709 + 0 1709 18118 23 1 0 239 0 1 14 0 17 53 0 7 47 0 1 62 10 9 11 25 31 204 0 118 231 30 31 10 1 48 50 24 0 8 20 13 218 2 102 79 1 0 82 chain 6351 chr20 64444167 + 63816702 63816788 MLT1C 463 + 67 147 79832 57 6 0 23 chain 29639 chr20 64444167 + 63827325 63827640 AluYb8 318 + 0 314 42442 132 1 0 182 chain 2962 chr20 64444167 + 63860123 63860164 MER53 195 - 28 65 100269 30 4 0 7 chain 12708 chr20 64444167 + 63908954 63909106 U1 164 + 0 151 65608 139 1 0 12 chain 49933 chr20 64444167 + 64253604 64254264 PABL_A 660 + 0 660 29589 127 1 0 79 2 1 71 24 25 102 0 1 254 chain 12488 chr21 46709983 + 5070594 5070744 L1PA10 4194 + 1212 1362 66005 150 chain 32003 chr21 46709983 + 5268019 5268385 L1PA3long 6157 + 5789 6155 40342 366 chain 522019 chr21 46709983 + 5348628 5354771 L1PA3long 6157 + 9 6157 2181 1066 0 1 166 0 1 940 1 2 1329 0 1 849 0 2 275 1 0 666 1 0 49 0 1 26 0 1 16 9 8 250 0 1 160 1 0 184 7 0 11 0 7 136 chain 72449 chr21 46709983 + 5369304 5370148 L1PA3long 6157 + 5312 6157 23441 511 0 1 333 chain 11714 chr21 46709983 + 5388055 5388183 L1PA3long 6157 + 5669 5797 67380 128 chain 30360 chr21 46709983 + 5388183 5388529 L1PA3long 6157 + 5798 6144 41706 346 chain 164834 chr21 46709983 + 5443558 5445761 L1PA7 6471 + 4111 6320 11423 237 0 3 154 0 2 151 0 1 170 7 8 112 2 0 408 12 13 163 1 2 86 1 0 8 5 6 75 2 1 82 2 1 337 0 1 132 0 8 9 8 0 39 chain 50193 chr21 46709983 + 5551593 5552273 L1PA8 5853 + 4382 5067 29490 215 14 15 374 12 8 12 0 8 53 chain 2731 chr21 46709983 + 5565620 5565705 LTR25 836 + 436 497 102114 13 24 13 16 13 0 19 chain 4017 chr21 46709983 + 5597399 5597449 HY3 101 + 10 61 91319 38 0 1 12 chain 78212 chr21 46709983 + 5625918 5626927 L1P1 4361 + 3161 4181 22048 522 0 13 454 1 0 27 1 0 4 chain 232657 chr21 46709983 + 5689016 5691954 L1PA6 6164 + 3206 6159 8676 222 2 0 5 1 3 267 0 13 482 1 0 83 2 1 38 0 1 21 1 0 4 0 1 52 1 0 651 4 5 336 0 2 649 4 5 112 chain 75475 chr21 46709983 + 5777645 5778495 L1PA3long 6157 + 5308 6157 22726 590 1 0 259 chain 10422 chr21 46709983 + 5779800 5780068 L1PA8 5853 + 5579 5842 69570 22 13 11 45 48 47 19 43 41 78 chain 273900 chr21 46709983 + 5785146 5788430 L1P1 4361 + 1 3290 7609 719 5 6 279 0 1 42 0 1 5 2 1 174 1 2 578 0 2 940 1 0 21 0 1 4 1 0 425 0 1 87 chain 35523 chr21 46709983 + 5789154 5789629 L1PA5 6144 + 5659 6135 37709 53 0 1 178 4 2 71 23 25 146 chain 75475 chr21 46709983 + 5898229 5899079 L1PA3long 6157 + 5308 6157 22725 590 1 0 259 chain 10422 chr21 46709983 + 5900384 5900652 L1PA8 5853 + 5579 5842 69569 22 13 11 45 48 47 19 43 41 78 chain 273900 chr21 46709983 + 5905730 5909014 L1P1 4361 + 1 3290 7608 719 5 6 279 0 1 42 0 1 5 2 1 174 1 2 578 0 2 940 1 0 21 0 1 4 1 0 425 0 1 87 chain 35523 chr21 46709983 + 5909738 5910213 L1PA5 6144 + 5659 6135 37708 53 0 1 178 4 2 71 23 25 146 chain 33504 chr21 46709983 + 5971939 5972370 THE1B-int 1605 + 0 429 39089 15 0 2 7 9 10 235 6 1 159 chain 24551 chr21 46709983 + 5974544 5974902 THE1B 368 + 0 368 49945 15 2 0 25 12 17 115 8 7 127 5 13 49 chain 40285 chr21 46709983 + 6220439 6220890 LTR7 482 + 0 482 34456 242 0 31 209 chain 196036 chr21 46709983 + 6245753 6248345 L1PA7 6471 + 3292 5908 9844 13 9 10 40 7 6 83 2 6 34 13 12 83 0 7 869 0 6 6 0 1 5 4 0 184 1 2 165 0 2 129 2 0 284 0 1 265 0 1 115 1 0 18 0 1 158 2 1 13 1 10 86 chain 3949 chr21 46709983 + 6256519 6256566 L1PA11 4918 + 2023 2071 91767 23 0 1 24 chain 100854 chr21 46709983 + 6260818 6262137 LTR12C 1709 + 0 1709 18201 208 32 49 81 0 43 83 0 1 21 1 2 162 0 278 143 0 47 106 0 4 399 1 0 82 chain 101823 chr21 46709983 + 6316341 6318254 L1PA8 5853 + 4382 5847 18082 215 14 15 381 20 20 17 474 34 19 10 7 425 0 1 46 1 0 47 2 0 69 24 22 39 3 2 18 3 2 86 chain 5842 chr21 46709983 + 6459692 6459763 MER92B 628 + 163 234 81727 71 chain 3138 chr21 46709983 + 6508225 6508258 MER34C 514 + 131 164 98486 33 chain 89425 chr21 46709983 + 6514832 6515870 L1P1 4361 + 621 3534 19771 505 0 1875 533 chain 5321 chr21 46709983 + 6519012 6519076 LTR23 429 + 9 73 84092 64 chain 47373 chr21 46709983 + 6525483 6526087 PABL_A 660 + 0 607 30513 422 0 3 161 1 0 4 1 2 15 chain 3300 chr21 46709983 + 6538613 6538672 L1MB3 1562 + 1490 1549 97010 13 5 6 14 1 0 26 chain 224291 chr21 46709983 + 6645388 6648406 L1PA7 6471 + 3292 6323 8916 102 0 1 85 17 16 41 17 18 23 0 4 57 0 1 290 0 1 417 0 3 154 0 2 151 0 1 170 7 8 112 2 0 408 12 13 163 1 2 86 1 0 8 5 6 75 2 1 82 2 1 337 0 1 132 0 8 9 8 0 42 chain 3949 chr21 46709983 + 6661239 6661286 L1PA11 4918 + 2023 2071 91766 23 0 1 24 chain 50193 chr21 46709983 + 6719746 6720426 L1PA8 5853 + 4382 5067 29489 215 14 15 374 12 8 12 0 8 53 chain 2731 chr21 46709983 + 6733773 6733858 LTR25 836 + 436 497 102113 13 24 13 16 13 0 19 chain 3729 chr21 46709983 + 6807631 6807670 HY3 101 + 61 100 93409 39 chain 497867 chr21 46709983 + 6860850 6868059 L1PA6 6164 + 4 6162 3208 100 1 0 463 1 0 40 0 1 191 1 18 82 4 8 916 0 2 325 0 6 68 0 1 107 0 2 37 0 2 26 0 4 179 0 4 65 1 0 297 0 18 225 0 1 45 0 2 61 0 1 722 0 4 318 1113 0 303 0 1 154 3 2 65 4 5 166 1 0 154 0 1 41 0 1 75 0 3 53 0 1 226 8 1 552 3 0 13 chain 84199 chr21 46709983 + 6865131 6866238 MER11A 1151 + 0 1151 20765 77 0 8 143 1 0 66 0 11 11 37 0 72 0 1 22 0 1 422 1 59 192 1 0 26 0 4 36 chain 3949 chr21 46709983 + 6988309 6988356 L1PA11 4918 + 2023 2071 91765 23 0 1 24 chain 50193 chr21 46709983 + 7046815 7047495 L1PA8 5853 + 4382 5067 29488 215 14 15 374 12 8 12 0 8 53 chain 2731 chr21 46709983 + 7060842 7060927 LTR25 836 + 436 497 102112 13 24 13 16 13 0 19 chain 4017 chr21 46709983 + 7092625 7092675 HY3 101 + 10 61 91318 38 0 1 12 chain 232657 chr21 46709983 + 7121169 7124107 L1PA6 6164 + 3206 6159 8675 222 2 0 5 1 3 267 0 13 482 1 0 83 2 1 38 0 1 21 1 0 4 0 1 52 1 0 651 4 5 336 0 2 649 4 5 112 chain 32247 chr21 46709983 + 7204794 7205160 L1PA3long 6157 + 5789 6155 40152 366 chain 524010 chr21 46709983 + 7280248 7286391 L1PA3long 6157 + 9 6157 2091 1066 0 1 166 0 1 940 1 2 1329 0 1 849 0 2 275 1 0 666 1 0 49 0 1 26 0 1 16 9 8 250 0 1 160 1 0 338 chain 72628 chr21 46709983 + 7303311 7304155 L1PA3long 6157 + 5312 6157 23392 511 0 1 333 chain 11417 chr21 46709983 + 7318471 7318599 L1PA3long 6157 + 5669 5797 67883 128 chain 30574 chr21 46709983 + 7318599 7318945 L1PA3long 6157 + 5798 6144 41501 346 chain 50193 chr21 46709983 + 7428593 7429273 L1PA8 5853 + 4382 5067 29487 215 14 15 374 12 8 12 0 8 53 chain 2731 chr21 46709983 + 7442620 7442705 LTR25 836 + 436 497 102111 13 24 13 16 13 0 19 chain 4017 chr21 46709983 + 7474403 7474453 HY3 101 + 10 61 91317 38 0 1 12 chain 167121 chr21 46709983 + 7552666 7554669 SVA_D 2077 + 42 2077 11262 209 0 6 430 0 40 164 0 83 60 1 4 180 52 0 128 48 0 731 chain 4053 chr21 46709983 + 7553710 7553762 SVA_D 2077 + 1346 1443 65467 28 8 53 16 chain 2758 chr21 46709983 + 7553908 7553938 SVA_D 2077 + 961 991 78898 30 chain 175074 chr21 46709983 + 7555069 7557118 L1PA4 6152 + 3297 5338 10828 199 4 0 122 0 1 267 7 5 8 8 0 534 0 1 870 0 4 30 chain 28854 chr21 46709983 + 7568096 7568522 LTR2 463 + 0 447 43550 162 8 29 4 1 0 158 44 45 49 chain 34604 chr21 46709983 + 7574819 7575291 LTR15 485 + 0 475 38287 281 0 4 64 3 4 42 0 1 15 1 2 29 5 1 32 chain 6265 chr21 46709983 + 7591161 7591281 LTR12C 1709 + 795 878 80110 42 37 0 41 chain 19284 chr21 46709983 + 7599519 7599832 L1PA8 5853 + 5538 5853 57254 26 1 0 23 0 2 21 2 0 67 13 18 40 7 6 15 8 7 90 chain 33516 chr21 46709983 + 7636954 7637796 HERVL66-int 1251 + 162 878 39075 16 19 13 64 26 0 35 0 1 8 20 1 17 91 57 80 1 2 40 1 0 60 22 11 22 10 7 45 1 0 37 1 0 45 34 32 21 77 53 49 chain 40285 chr21 46709983 + 7660870 7661321 LTR7 482 + 0 482 34455 242 0 31 209 chain 196036 chr21 46709983 + 7686184 7688776 L1PA7 6471 + 3292 5908 9843 13 9 10 40 7 6 83 2 6 34 13 12 83 0 7 869 0 6 6 0 1 5 4 0 184 1 2 165 0 2 129 2 0 284 0 1 265 0 1 115 1 0 18 0 1 158 2 1 13 1 10 86 chain 7338 chr21 46709983 + 7809343 7809710 MLT2A1 477 + 320 477 76554 64 266 56 37 chain 12470 chr21 46709983 + 7811024 7811191 MER6A 605 + 360 531 66032 74 2 1 9 0 4 17 0 1 65 chain 29379 chr21 46709983 + 7846693 7847025 L1PA5 6144 + 5792 6128 42773 13 0 1 187 0 3 132 chain 25650 chr21 46709983 + 7851214 7851491 AluYb9 318 + 34 311 48243 277 chain 29761 chr21 46709983 + 7861612 7862054 MLT2A1 477 + 0 477 42289 153 15 17 11 0 1 12 0 1 9 0 3 86 19 9 81 0 2 12 7 43 37 chain 75475 chr21 46709983 + 8175715 8176565 L1PA3long 6157 + 5308 6157 22724 590 1 0 259 chain 10422 chr21 46709983 + 8177870 8178138 L1PA8 5853 + 5579 5842 69568 22 13 11 45 48 47 19 43 41 78 chain 273900 chr21 46709983 + 8183216 8186500 L1P1 4361 + 1 3290 7607 719 5 6 279 0 1 42 0 1 5 2 1 174 1 2 578 0 2 940 1 0 21 0 1 4 1 0 425 0 1 87 chain 35523 chr21 46709983 + 8187224 8187699 L1PA5 6144 + 5659 6135 37707 53 0 1 178 4 2 71 23 25 146 chain 16260 chr21 46709983 + 8218486 8218925 LSU-rRNA_Hsa 377 + 19 366 60665 21 9 8 60 1 0 16 1 0 14 4 0 27 176 93 42 3 1 65 chain 75475 chr21 46709983 + 8358760 8359610 L1PA3long 6157 + 5308 6157 22723 590 1 0 259 chain 10422 chr21 46709983 + 8360915 8361183 L1PA8 5853 + 5579 5842 69567 22 13 11 45 48 47 19 43 41 78 chain 273900 chr21 46709983 + 8366261 8369545 L1P1 4361 + 1 3290 7606 719 5 6 279 0 1 42 0 1 5 2 1 174 1 2 578 0 2 940 1 0 21 0 1 4 1 0 425 0 1 87 chain 35523 chr21 46709983 + 8370269 8370744 L1PA5 6144 + 5659 6135 37706 53 0 1 178 4 2 71 23 25 146 chain 16259 chr21 46709983 + 8401524 8401964 LSU-rRNA_Hsa 377 + 19 366 60668 21 9 8 60 1 0 16 1 0 14 4 0 27 177 93 42 3 1 65 chain 16260 chr21 46709983 + 8445756 8446195 LSU-rRNA_Hsa 377 + 19 366 60664 21 9 8 60 1 0 16 1 0 14 4 0 27 176 93 42 3 1 65 chain 312468 chr21 46709983 + 8607724 8611272 L1PA5 6144 + 2571 6138 6564 87 0 1 17 0 1 456 3 8 17 1 0 526 0 2 2005 0 11 436 chain 3246 chr21 46709983 + 8615387 8615453 L1MCa 1829 + 1589 1654 97510 23 18 17 25 chain 146632 chr21 46709983 + 8616643 8618817 L1PB1 5432 + 3329 5422 12565 152 0 2 255 15 1 253 10 11 218 0 1 19 1 0 387 11 7 73 0 1 103 0 2 256 0 1 12 0 1 19 0 3 10 42 0 19 1 0 7 3 2 12 24 22 42 2 1 15 1 0 43 5 4 13 3 0 6 16 6 18 27 25 6 7 0 13 1 0 21 1 0 13 1 0 18 chain 187311 chr21 46709983 + 8639586 8641837 L1P1 4361 + 522 2753 10242 52 1 0 118 7 0 64 3 4 277 0 2 81 18 4 154 1 0 1036 1 0 371 4 0 11 1 6 51 chain 23586 chr21 46709983 + 8702784 8703126 MLT2A1 477 + 4 384 51456 138 0 1 26 1 5 106 0 25 40 19 27 12 chain 64492 chr21 46709983 + 8804390 8805252 L1PA7 6471 + 5369 6235 25312 19 6 0 8 1 7 194 0 6 18 4 0 45 3 4 461 0 1 103 chain 193426 chr21 46709983 + 9000000 9002237 L1PA4 6152 + 3920 6151 9955 713 2 0 174 5 9 562 1 0 87 15 6 470 0 3 59 1 0 148 chain 9824 chr21 46709983 + 9094647 9094856 MSTA-int 1630 + 1405 1611 70777 27 58 56 28 6 5 90 chain 27688 chr21 46709983 + 9101408 9101702 AluYb8 318 + 24 318 45335 294 chain 16872 chr21 46709983 + 9125134 9125481 MER57-int 2662 + 2332 2647 59944 92 18 12 68 36 21 12 0 1 5 9 6 26 29 23 27 3 0 22 chain 27329 chr21 46709983 + 9135031 9135410 L1MA3 4352 + 3059 3445 45787 41 8 16 286 4 3 40 chain 29433 chr21 46709983 + 9180026 9180345 AluYb8 318 + 0 317 42690 132 2 0 185 chain 36997 chr21 46709983 + 9190576 9191027 L1PA5 6144 + 5688 6144 36736 122 1 2 77 0 4 251 chain 28842 chr21 46709983 + 9249135 9249479 L1P1 4361 + 3718 4065 43565 166 0 2 48 0 1 130 chain 2559 chr21 46709983 + 9258372 9258448 MER21C 908 + 662 740 103334 27 31 34 4 1 0 13 chain 455358 chr21 46709983 + 9265952 9271266 L1PA4 6152 + 15 5349 4249 111 1 15 898 0 1 405 1 2 284 0 1 697 0 3 769 0 1 472 9 8 953 1 0 29 0 1 684 chain 23660 chr21 46709983 + 9298494 9298778 LTR14A 344 + 0 344 51340 42 0 60 242 chain 133700 chr21 46709983 + 9298873 9300556 HERVK14-int 1672 + 1 1665 13673 29 1 0 11 2 1 46 1 0 217 1 0 28 2 0 235 1 0 179 1 0 40 0 1 28 4 3 163 1 0 79 3 1 9 3 0 35 1 0 202 0 1 18 0 1 88 1 0 63 1 0 31 2 0 9 1 0 140 1 0 6 chain 38218 chr21 46709983 + 9300556 9301003 MER9a2 513 + 0 513 35897 227 1 67 219 chain 151629 chr21 46709983 + 9302322 9304363 HERVK9-int 4720 + 37 3614 12248 12 8 5 4 1 0 66 1 0 8 1 0 26 6 5 510 20 0 302 7 8 513 0 924 230 78 716 248 chain 419415 chr21 46709983 + 9311603 9316759 L1PA7 6471 + 1130 6461 4883 120 8 48 254 0 1 5 3 0 683 0 4 240 1 0 81 1 11 62 1 2 251 0 4 649 1 5 124 0 70 190 0 2 29 0 30 158 0 2 132 0 1 465 0 1 163 8 9 579 1 4 108 1 5 681 5 6 152 chain 49110 chr21 46709983 + 9618148 9618667 L1HS 6032 + 4290 4809 29902 519 chain 4298 chr21 46709983 + 9660636 9660854 LTR12C 1709 + 658 718 89517 25 158 0 35 chain 6693 chr21 46709983 + 9736007 9736093 LTR12C 1709 + 773 1018 63585 32 0 159 54 chain 24241 chr21 46709983 + 9736093 9736391 LTR12C 1709 + 699 996 50435 138 1 0 159 chain 35613 chr21 46709983 + 9848031 9848445 HERVH-int 3825 + 3411 3825 37652 414 chain 3512 chr21 46709983 + 9996913 9996999 MER45A 178 + 75 162 95163 27 34 35 25 chain 41406 chr21 46709983 + 10004191 10004787 L1PA8 5853 + 5249 5853 33730 70 0 2 194 2 3 35 4 10 6 0 3 36 2 0 69 3 2 13 1 0 48 4 5 20 1 0 88 chain 192378 chr21 46709983 + 10047098 10049223 L1PA3long 6157 + 4032 6157 10001 2125 chain 58774 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23 12 6 1 0 7 1 0 14 3 2 16 1 0 4 3 1 11 3 0 14 20 15 18 1 0 31 1 0 33 1 0 5 3 2 5 1 0 15 1 0 10 2 1 13 1 0 21 1 0 7 1 0 28 2 0 6 1 0 48 8 5 33 1 0 6 1 0 60 1 0 5 1 0 26 1 0 11 1 0 16 33 23 4 1 0 21 1 0 4 4 1 7 1 0 30 1 0 41 2 0 11 1 0 21 1 0 5 1 0 5 1 0 5 3 1 24 8 5 22 1 0 14 1 0 40 1 0 27 1 2 71 1 0 38 4 0 13 1 0 4 19 12 17 1 0 11 1 0 6 1 0 24 2 1 20 0 1 7 1 0 59 11 9 19 1 0 20 13 10 32 10 9 23 4 3 9 10 7 403 1 0 21 1 0 64 2 1 82 1 0 77 2 1 12 2 1 134 1 0 5 0 1 284 0 11 205 chain 23219 chr21 46709983 + 13070894 13071265 L1PA8 5853 + 5489 5853 52055 68 8 7 43 3 1 70 29 27 35 2 1 17 4 3 92 chain 227624 chr21 46709983 + 13072076 13074714 L1PA5 6144 + 3498 6137 8822 184 1 0 266 0 1 61 1 2 610 1 0 899 0 2 170 4 4 9 1 0 431 chain 453675 chr21 46709983 + 13131778 13137123 L1PA4 6152 + 8 5354 4294 482 0 1 85 1 0 132 12 5 358 0 1 84 0 3 1076 0 1 1279 3 0 1377 0 1 385 0 4 37 1 2 33 chain 176446 chr21 46709983 + 13147830 13149797 L1PA2 6032 + 4066 6032 10752 78 0 1 1721 5 0 7 6 11 143 2 0 5 chain 117813 chr21 46709983 + 13225802 13227446 THE1A-int 1579 + 12 1579 15918 32 0 1 96 88 10 19 1 2 168 13 17 50 1 0 33 0 2 60 7 4 93 8 0 145 2 1 6 0 1 161 0 2 430 9 10 179 0 1 34 0 1 9 chain 22548 chr21 46709983 + 13227446 13227797 THE1A 353 + 0 353 53046 73 0 1 4 9 7 21 13 11 62 3 4 123 5 9 38 chain 33337 chr21 46709983 + 13258632 13259101 MER11A 1151 + 643 1151 39228 15 0 1 149 19 54 58 0 1 14 1 2 32 1 0 14 4 5 69 0 1 93 chain 6197 chr21 46709983 + 13306852 13306924 MER72 723 + 651 723 80366 72 chain 11888 chr21 46709983 + 13339147 13339323 L1PA8 5853 + 5684 5853 67038 4 1 0 25 4 0 29 1 0 18 8 7 86 chain 94760 chr21 46709983 + 13357265 13359026 L1PB 1623 + 98 1586 18935 4 1 0 10 1 0 5 1 0 52 4 1 18 7 4 76 2 1 103 2 0 26 2 1 69 28 7 306 16 19 175 18 19 309 22 7 67 193 0 36 2 1 32 1 0 5 134 103 21 2 0 11 chain 6832 chr21 46709983 + 13379395 13379522 SVA_F 1814 + 604 697 78195 15 38 1 40 0 3 34 chain 104098 chr21 46709983 + 13379623 13381678 SVA_A 1864 + 404 1849 17809 16 11 14 67 0 79 32 1 2 4 1 0 102 40 0 9 79 0 91 156 0 65 157 0 158 76 0 101 1 0 28 37 0 71 118 0 73 39 11 522 chain 1317 chr21 46709983 + 13379864 13379897 SVA_A 1864 + 763 796 36830 33 chain 2993 chr21 46709983 + 13380076 13380151 SVA_A 1864 + 967 1002 36830 15 41 1 19 chain 3153 chr21 46709983 + 13380297 13380376 SVA_A 1864 + 1032 1071 36830 20 40 0 19 chain 3337 chr21 46709983 + 13380612 13380688 SVA_A 1864 + 1080 1153 40781 10 10 8 46 1 0 9 chain 1625 chr21 46709983 + 13380818 13380855 SVA_A 1864 + 1209 1246 40781 37 chain 280797 chr21 46709983 + 13414808 13417909 L1PA2 6032 + 2930 6032 7400 1442 0 1 1659 chain 66711 chr21 46709983 + 13426516 13427330 MER11D 897 + 12 853 24772 362 0 4 124 1 3 76 8 28 14 0 1 229 chain 5786 chr21 46709983 + 13452876 13452994 MER33 330 + 46 166 81988 54 34 36 30 chain 99378 chr21 46709983 + 13469518 13470706 L1PA3long 6157 + 4734 6147 18368 44 1 0 9 0 1 4 43 268 1087 chain 151123 chr21 46709983 + 13472872 13474556 L1PA3long 6157 + 4476 6143 12281 597 15 0 192 2 0 878 chain 9509 chr21 46709983 + 13483445 13483596 MER6A 605 + 372 534 71451 65 8 11 44 5 13 29 chain 41178 chr21 46709983 + 13537301 13537843 MER41A 554 + 0 552 33852 140 11 22 216 1 0 174 chain 191526 chr21 46709983 + 13577049 13579202 L1PA3long 6157 + 2936 5103 10044 282 0 1 37 0 4 163 5 4 935 0 4 486 0 1 222 0 5 23 chain 216474 chr21 46709983 + 13590199 13592768 L1PA7 6471 + 3863 6443 9135 293 3 4 93 0 3 351 0 2 65 0 4 124 0 1 433 0 3 63 0 1 194 7 1 123 0 3 79 1 0 740 chain 28030 chr21 46709983 + 13619126 13619431 L1PA2 6032 + 5726 6031 44815 305 chain 3729 chr21 46709983 + 13672669 13672708 HY3 101 + 61 100 93408 39 chain 498193 chr21 46709983 + 13725901 13733110 L1PA6 6164 + 4 6162 3195 100 1 0 463 1 0 40 0 1 191 1 18 82 4 8 916 0 2 325 0 6 68 0 1 107 0 2 37 0 2 26 0 4 179 0 4 65 1 0 297 0 18 225 0 1 45 0 2 61 0 1 722 0 4 318 1113 0 303 0 1 154 3 2 65 4 5 164 1 0 156 0 1 41 0 1 75 0 3 53 0 1 226 8 1 552 3 0 13 chain 82987 chr21 46709983 + 13730182 13731289 MER11A 1151 + 0 1151 21019 45 4 4 28 0 8 143 1 0 66 0 11 11 37 0 72 0 1 22 0 1 422 1 59 192 1 0 26 0 4 36 chain 18374 chr21 46709983 + 13803569 13803877 LTR7B 505 + 0 505 58269 51 0 1 56 57 254 79 14 13 51 chain 78322 chr21 46709983 + 13819879 13820848 LTR5_Hs 974 + 0 974 22025 285 0 1 105 2 1 369 11 11 47 8 15 37 2 0 103 chain 63507 chr21 46709983 + 13955221 13955941 L1PA5 6144 + 5367 6087 25523 720 chain 22902 chr21 46709983 + 14002723 14003014 AluSg4 309 + 0 294 52509 81 0 5 45 1 0 132 1 0 31 chain 37709 chr21 46709983 + 14115009 14115509 HERV1_LTRa 508 + 0 485 36267 42 1 0 6 1 0 25 31 16 68 12 14 314 chain 37585 chr21 46709983 + 14124311 14124809 HERV1_LTRa 508 + 0 508 36344 42 4 6 39 33 25 201 0 16 179 chain 14009 chr21 46709983 + 14142158 14142319 L1PA7 6471 + 6305 6466 63582 161 chain 553392 chr21 46709983 + 14166727 14172876 L1PA3long 6157 + 6 6157 525 62 16 13 165 0 1 1168 0 1 536 1 0 158 0 3 3566 0 1 477 chain 70173 chr21 46709983 + 14179578 14180549 MER11A 1151 + 0 1151 23960 55 0 99 76 1 0 64 4 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5 7 6 0 45 24 25 77 0 2 5 chain 506632 chr21 46709983 + 14778905 14785063 L1PA6 6164 + 0 6154 2909 371 29 36 104 1 0 276 0 17 5 17 0 146 0 1 139 0 1 327 15 1 7 0 5 246 3 8 644 14 1 178 0 1 41 0 1 744 0 1 229 0 1 165 1 0 602 0 1 649 0 3 371 1 0 75 1 0 757 chain 486610 chr21 46709983 + 14800651 14806250 L1PA4 6152 + 554 6152 3500 201 0 1 2742 0 7 1805 14 0 831 0 5 6 chain 22550 chr21 46709983 + 14807944 14808202 AluY 311 + 39 298 53042 93 0 1 165 chain 47417 chr21 46709983 + 14824953 14825465 L1PA2 6032 + 5518 6030 30499 512 chain 25835 chr21 46709983 + 14843499 14843835 THE1A 353 + 0 341 47964 13 0 5 92 1 0 51 1 2 178 chain 90070 chr21 46709983 + 14848221 14849289 L1PA7 6471 + 5391 6467 19671 82 0 1 149 0 5 74 0 1 90 1 0 578 0 2 13 0 1 71 1 0 9 chain 9160 chr21 46709983 + 14912760 14912865 L1P3 4156 + 3999 4104 72208 105 chain 26106 chr21 46709983 + 14913064 14913374 L1PA7 6471 + 6154 6464 47564 310 chain 559614 chr21 46709983 + 14927082 14933113 L1PA2 6032 + 0 6032 185 3938 0 1 2093 chain 4029 chr21 46709983 + 15146447 15146497 MADE1 96 + 46 96 91247 50 chain 25487 chr21 46709983 + 15317048 15317407 THE1B 368 + 0 368 48504 15 2 0 25 0 5 37 10 11 75 12 18 56 1 0 126 chain 3183 chr21 46709983 + 15327322 15327355 MER52D 1964 + 1220 1253 98063 33 chain 32858 chr21 46709983 + 15454727 15455234 MLT2A1 477 + 2 477 39623 140 0 1 23 3 7 46 0 1 104 1 0 61 78 37 45 0 4 6 chain 186559 chr21 46709983 + 15462543 15464955 L1PA8 5853 + 3424 5853 10271 17 0 1 423 0 6 463 1 0 112 2 0 138 1 0 422 10 6 85 3 0 6 0 3 276 0 1 181 1 0 40 8 29 56 1 0 47 9 8 16 1 0 93 chain 224062 chr21 46709983 + 15554205 15556641 L1PA3long 6157 + 3472 5908 8928 2436 chain 25221 chr21 46709983 + 15570420 15570714 AluSp 311 + 17 310 48909 115 1 0 178 chain 435421 chr21 46709983 + 15576960 15582619 HERVL-int 5654 + 0 5647 4657 228 0 3 189 5 10 346 10 11 737 5 10 161 0 1 200 1 14 162 1 10 123 1 2 365 1 2 396 0 1 78 0 1 69 0 1 43 0 1 66 3 25 490 0 2 118 0 4 90 89 2 409 0 8 210 7 0 7 0 9 5 1 0 42 5 6 354 0 4 165 0 6 41 1 0 24 1 7 14 3 0 5 44 47 207 23 2 114 chain 3928 chr21 46709983 + 15580852 15580897 HERVL-int 5654 + 3966 4011 91930 45 chain 111473 chr21 46709983 + 15593691 15595423 L1MA1 4479 + 2490 4162 16882 99 18 13 65 2 1 77 6 5 10 13 11 19 0 1 13 1 0 62 1 0 92 1 0 27 6 4 84 0 1 76 33 19 82 1 0 14 7 4 36 11 6 78 3 0 131 2 0 166 0 4 22 22 23 4 1 0 16 1 0 71 1 0 18 3 1 14 1 0 88 12 8 123 1 0 28 14 2 34 1 0 9 1 0 11 chain 27953 chr21 46709983 + 15598193 15598538 L1PB1 5432 + 4159 4507 44939 55 0 1 236 0 2 54 chain 3648 chr21 46709983 + 15693213 15693292 MADE1 96 - 0 96 94036 30 11 28 38 chain 163651 chr21 46709983 + 15697204 15699150 L1PA7 6471 + 4505 6468 11504 248 0 1 797 0 1 69 1 0 23 1 32 22 0 2 182 16 0 270 0 1 306 2 0 9 chain 3379 chr21 46709983 + 15708657 15708695 U13 108 + 0 38 96308 38 chain 4203 chr21 46709983 + 15719973 15720036 MADE1 96 + 8 96 90099 13 1 26 49 chain 34806 chr21 46709983 + 15738674 15739131 LTR2 463 + 0 463 38151 186 6 10 166 12 13 52 0 1 35 chain 115252 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21347452 L1MA1 4479 + 3490 3657 64578 29 4 3 135 chain 66756 chr21 46709983 + 21395432 21396422 L1PB1 5432 + 3878 4882 24757 221 18 26 263 0 1 98 30 31 86 1 5 20 7 5 40 0 1 38 0 1 90 30 30 4 0 1 4 1 0 39 chain 71627 chr21 46709983 + 21401840 21402842 MER11A 1151 + 0 1151 23631 58 0 100 48 1 3 80 8 5 94 0 1 51 5 6 87 3 5 21 1 0 114 6 9 8 1 0 53 0 4 56 1 0 15 7 41 49 0 9 168 7 6 60 chain 27713 chr21 46709983 + 21443086 21443425 L1PA6 6164 + 5815 6154 45298 198 5 6 128 1 0 7 chain 152777 chr21 46709983 + 21446513 21448485 L1PA8A 6298 + 4291 6273 12183 334 1 0 36 0 1 152 0 1 10 1 0 122 1 2 5 1 0 40 0 1 66 0 1 228 0 1 43 0 5 150 2 1 49 0 1 527 0 1 32 0 1 78 17 17 77 chain 44434 chr21 46709983 + 21571604 21572202 THE1B-int 1605 + 1 625 31868 43 5 6 69 12 11 4 0 1 295 0 25 170 chain 36199 chr21 46709983 + 21657593 21658025 L1PA5 6144 + 5705 6134 37270 105 1 2 17 0 1 159 0 1 20 6 0 124 chain 35949 chr21 46709983 + 21660839 21661242 L1P1 4361 + 3927 4328 37441 223 1 0 155 1 0 23 chain 143110 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0 6 chain 8519 chr21 46709983 + 22205220 22205325 U4 144 + 29 134 73641 105 chain 29350 chr21 46709983 + 22238017 22238380 THE1C-int 1605 + 18 440 42808 98 0 54 75 0 1 147 1 5 42 chain 28817 chr21 46709983 + 22267480 22267834 THE1A 353 + 0 353 43601 109 2 1 243 chain 116778 chr21 46709983 + 22272608 22274025 L1PA6 6164 + 4740 6161 16088 26 13 10 5 0 3 527 1 5 510 1 0 166 21 22 147 chain 17332 chr21 46709983 + 22331545 22331885 L1PB1 5432 + 5121 5427 59423 13 1 0 12 1 0 12 17 11 51 2 1 15 1 0 46 1 0 14 2 0 6 16 6 19 2 0 5 1 0 14 2 0 19 1 0 5 1 0 21 1 0 13 1 0 18 2 0 5 chain 11546 chr21 46709983 + 22401048 22403172 MER51-int 1546 + 104 1543 67672 38 10 9 34 7 1 8 6 0 16 305 177 22 1401 893 72 53 41 14 49 35 29 3 1 18 19 11 20 chain 39865 chr21 46709983 + 22458264 22458821 MLT2A2 560 + 0 560 34765 188 9 3 119 1 0 91 1 12 87 23 22 38 chain 513313 chr21 46709983 + 22493175 22499632 L1PA7 6471 + 3 6465 2609 267 2 1 86 0 1 51 30 5 556 5 13 561 0 4 140 4 1 124 0 7 130 0 1 156 2 0 30 1 0 54 0 2 108 2 6 201 0 1 122 1 3 193 2 0 7 0 6 484 8 7 172 1 0 25 0 1 120 2 1 352 0 1 61 8 1 453 1 3 50 1 0 7 0 1 196 0 3 845 5 6 80 14 20 408 0 2 320 3 0 6 chain 5289 chr21 46709983 + 22545617 22545697 LOR1b 457 + 0 88 84248 31 1 10 27 1 0 20 chain 37188 chr21 46709983 + 22593365 22593867 L1PB1 5432 + 4176 4678 36619 52 0 1 148 3 4 177 5 6 64 3 0 50 chain 4772 chr21 46709983 + 22598448 22598967 LTR12C 1709 + 795 1434 86843 42 442 562 35 chain 8319 chr21 46709983 + 22599019 22599143 LTR12D 1347 + 1224 1347 74116 58 17 16 49 chain 4579 chr21 46709983 + 22681829 22681883 HERVL-int 5654 + 19 73 87914 54 chain 95100 chr21 46709983 + 22687074 22688117 L1PA3long 6157 + 5103 6146 18897 1043 chain 5570 chr21 46709983 + 22752361 22752423 L1HS 6032 - 441 503 74477 62 chain 35660 chr21 46709983 + 22752423 22752829 L1HS 6032 + 5515 6032 37623 14 13 124 379 chain 3671 chr21 46709983 + 22776725 22776770 MER67C 710 + 663 708 93815 45 chain 15060 chr21 46709983 + 22789567 22789777 L1PB2 3958 + 3630 3838 62191 51 2 1 24 0 1 48 2 0 83 chain 62963 chr21 46709983 + 22860599 22861313 L1PA5 6144 + 5432 6144 25640 703 2 0 9 chain 22417 chr21 46709983 + 22905155 22905416 L1PA7 6471 + 6208 6469 53244 261 chain 63940 chr21 46709983 + 22909066 22909774 L1PA3long 6157 + 5449 6157 25426 708 chain 365071 chr21 46709983 + 22919640 22923851 L1PA5 6144 + 1929 6144 5733 381 16 10 99 0 1 26 2 0 330 1 0 166 0 1 1389 5 13 350 1 2 1305 0 2 140 chain 227275 chr21 46709983 + 22956023 22958513 L1PA3long 6157 + 3667 6157 8836 2490 chain 112014 chr21 46709983 + 22985315 22986949 L1PB1 5432 + 3804 5413 16812 26 0 1 339 1 0 209 7 8 163 0 1 81 6 2 212 0 8 190 9 9 50 1 2 9 4 3 21 2 1 7 1 0 9 8 4 8 2 0 53 22 20 39 45 32 16 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 9 chain 82095 chr21 46709983 + 23005075 23006251 L1PA8 5853 + 4657 5853 21225 53 11 16 280 9 5 86 3 0 5 8 11 61 10 36 354 1 0 44 2 0 72 1 0 4 8 7 38 13 12 19 5 4 89 chain 3385 chr21 46709983 + 23017168 23017230 L1MA3 4352 + 4144 4211 96225 16 13 18 33 chain 20837 chr21 46709983 + 23020247 23020494 AluYc3 301 + 0 249 55320 113 1 3 133 chain 24504 chr21 46709983 + 23068843 23069143 AluSc 308 + 8 308 50012 300 chain 96592 chr21 46709983 + 23168716 23169916 L1PA7 6471 + 5273 6469 18704 348 1 0 82 1 0 604 13 13 139 2 0 10 chain 93097 chr21 46709983 + 23207896 23209051 L1PA7 6471 + 5300 6464 19169 8 4 0 273 0 10 30 1 0 77 0 2 431 0 1 89 0 1 242 chain 21474 chr21 46709983 + 23233752 23233988 L1PA5 6144 + 5877 6113 54544 236 chain 37309 chr21 46709983 + 23281360 23281855 L1PA8 5853 + 5350 5839 36543 212 1 0 46 6 4 66 2 1 13 1 0 48 2 1 98 chain 12779 chr21 46709983 + 23326789 23326940 L1PA2 6032 + 5883 6032 65473 138 2 0 11 chain 7231 chr21 46709983 + 23474883 23474991 MER57C2 434 + 0 120 76859 40 4 17 29 1 0 34 chain 9693 chr21 46709983 + 23490482 23490626 MSTA 426 + 28 200 71065 28 0 3 41 19 44 56 chain 15539 chr21 46709983 + 23501019 23501210 MSTA-int 1630 + 22 213 61604 191 chain 2830 chr21 46709983 + 23713819 23713853 MLT2B4 540 + 454 488 101399 34 chain 9969 chr21 46709983 + 23760438 23760759 L1MC1 2226 + 1740 2039 70485 35 32 33 18 85 68 22 1 0 50 26 23 5 2 0 45 chain 26661 chr21 46709983 + 23764155 23764467 L1PA5 6144 + 5830 6141 46743 27 1 0 284 chain 119800 chr21 46709983 + 23806834 23808314 LTR12C 1709 + 0 1709 15566 300 6 7 51 0 1 291 0 119 68 1 0 123 0 28 16 35 114 106 1 5 211 8 6 263 chain 2621 chr21 46709983 + 23807690 23807722 LTR12C 1709 + 1133 1165 56850 32 chain 54157 chr21 46709983 + 23856830 23857544 LTR12_ 688 + 0 688 28168 25 1 0 5 0 1 57 25 0 384 1 0 216 chain 4131 chr21 46709983 + 23891666 23891716 MLT2A1 477 + 428 477 90573 29 1 0 20 chain 59218 chr21 46709983 + 23928186 23928879 L1PA7 6471 + 5776 6469 26601 693 chain 47223 chr21 46709983 + 23986658 23987673 THE1B-int 1605 + 18 1600 30565 10 4 5 122 2 5 111 0 2 157 44 21 21 351 935 193 chain 33647 chr21 46709983 + 24013273 24013770 MLT2A2 560 + 0 506 38965 193 34 40 64 18 8 97 0 11 62 0 2 29 chain 10768 chr21 46709983 + 24013919 24014157 MLT2B2 565 + 190 529 68927 31 2 0 15 24 25 40 49 151 77 chain 21516 chr21 46709983 + 24097998 24098282 THE1D-int 1627 + 192 478 54487 58 0 1 9 0 2 142 2 0 4 0 1 69 chain 28293 chr21 46709983 + 24139969 24140373 L1PA16 3655 + 2674 3080 44429 13 10 11 205 15 14 61 4 6 96 chain 4053 chr21 46709983 + 24155223 24155312 L1MD 993 + 721 810 91061 35 27 27 27 chain 76100 chr21 46709983 + 24179785 24180655 L1PA5 6144 + 5270 6143 22541 197 1 3 564 0 1 108 chain 26337 chr21 46709983 + 24191065 24191397 L1PA8A 6298 + 5543 5875 47218 332 chain 49519 chr21 46709983 + 24212762 24213392 L1PA7 6471 + 5844 6468 29757 292 8 4 323 2 0 5 chain 91614 chr21 46709983 + 24256312 24257514 L1PA7 6471 + 5280 6467 19393 227 5 8 107 0 2 37 0 1 128 7 11 241 0 2 285 0 1 84 0 4 20 36 4 25 chain 42766 chr21 46709983 + 24416114 24416643 MER41A 554 + 13 554 32906 235 0 10 88 0 1 21 0 1 185 chain 3647 chr21 46709983 + 24420205 24420250 MER41A 554 + 280 325 94047 45 chain 12040 chr21 46709983 + 24420254 24420407 MER41A 554 + 332 489 66781 34 1 0 102 0 5 16 chain 25193 chr21 46709983 + 24465686 24466100 THE1C-int 1605 + 15 512 48957 70 34 90 229 24 52 52 1 0 4 chain 182615 chr21 46709983 + 24475559 24477656 L1PA6 6164 + 4060 6162 10464 121 0 1 96 0 1 91 0 4 1135 1 0 653 chain 130119 chr21 46709983 + 24488369 24490009 L1PA7 6471 + 4833 6466 14024 443 0 13 20 34 11 28 0 1 272 1 0 321 8 8 23 0 1 162 0 1 314 0 1 14 chain 12263 chr21 46709983 + 24509979 24510202 MER30 238 + 0 238 66345 19 28 27 52 26 45 56 3 0 39 chain 3833 chr21 46709983 + 24545584 24545630 MADE1 96 + 50 96 92614 46 chain 499976 chr21 46709983 + 24554597 24560956 L1PA7 6471 + 5 6465 3127 406 7 8 39 0 1 95 4 58 627 9 12 119 0 14 434 0 1 191 17 18 114 1 0 449 0 3 38 0 3 50 0 1 132 5 6 73 7 8 4 1 0 187 1 5 395 15 13 403 0 1 465 1 0 5 0 1 184 1 6 4 0 1 440 0 1 47 10 8 514 1 2 33 1 4 262 0 4 79 0 1 165 0 1 175 0 1 7 1 0 114 0 1 27 chain 36508 chr21 46709983 + 24638923 24639393 LTR2B 499 + 9 499 37077 6 0 1 88 6 25 179 0 1 8 1 0 182 chain 31026 chr21 46709983 + 24700052 24700511 L1P2 5180 + 2090 2575 41103 67 6 21 89 12 33 24 20 9 219 4 5 18 chain 5619 chr21 46709983 + 24731576 24731656 MLT2B4 540 + 58 139 82712 58 5 6 17 chain 50997 chr21 46709983 + 24736567 24737146 L1PA4 6152 + 5577 6152 29215 321 1 0 104 1 0 145 2 0 5 chain 25679 chr21 46709983 + 24739537 24739831 L1PA5 6144 + 5844 6139 48202 108 1 2 185 chain 22743 chr21 46709983 + 24803583 24803869 AluSp 311 + 11 291 52767 109 6 0 171 chain 7875 chr21 46709983 + 24818010 24818096 L1PA7 6471 + 6218 6304 75186 86 chain 12169 chr21 46709983 + 24818102 24818247 L1PA7 6471 + 6309 6454 66530 145 chain 47446 chr21 46709983 + 24851684 24852204 L1PA3long 6157 + 5636 6157 30490 378 0 1 142 chain 29998 chr21 46709983 + 24908271 24908604 L1PA2 6032 + 5700 6032 42055 317 1 0 15 chain 18740 chr21 46709983 + 24909019 24909251 AluSc5 308 + 64 294 57857 67 2 0 163 chain 5017 chr21 46709983 + 24946844 24946921 MADE1 96 + 0 96 85577 21 6 24 44 0 1 6 chain 8444 chr21 46709983 + 25014041 25014427 MER65A 464 + 64 464 73810 24 24 24 39 1 4 22 221 232 55 chain 24876 chr21 46709983 + 25095419 25095768 THE1B 368 + 0 368 49482 169 1 0 23 31 51 125 chain 5442 chr21 46709983 + 25103403 25103479 MLT1A0 366 + 30 107 83498 17 1 2 58 chain 43156 chr21 46709983 + 25132030 25132770 L1PB1 5432 + 4705 5416 32681 76 0 1 299 21 22 11 5 0 20 1 0 4 24 21 9 2 0 51 1 0 17 1 0 44 1 0 12 36 23 12 24 19 16 13 12 16 0 3 11 1 0 12 chain 29503 chr21 46709983 + 25153763 25154116 THE1B-int 1605 + 13 369 42604 348 0 3 5 chain 30289 chr21 46709983 + 25294091 25294467 THE1C 375 + 0 375 41775 350 1 0 25 chain 131926 chr21 46709983 + 25347307 25348879 L1PA7 6471 + 4882 6463 13835 591 0 5 143 2 0 618 9 13 56 7 8 142 0 1 4 chain 15888 chr21 46709983 + 25360248 25360466 L1PA8 5853 + 5637 5849 61171 45 1 0 11 1 0 6 3 1 40 2 1 19 1 0 89 chain 34826 chr21 46709983 + 25378083 25378706 L1PA14 3548 + 2898 3485 38140 40 23 15 45 2 0 7 1 0 101 17 13 12 2 0 6 1 0 13 1 0 71 4 3 57 0 1 47 2 1 13 5 1 19 18 16 14 1 0 3 1 0 19 2 1 39 6 0 10 1 0 20 chain 4420 chr21 46709983 + 25394487 25394556 L1MA5A 2387 + 2240 2306 88786 19 3 1 36 1 0 10 chain 18624 chr21 46709983 + 25413271 25413497 L1PA7 6471 + 6242 6468 57975 226 chain 469863 chr21 46709983 + 25433895 25439626 L1PA7 6471 + 741 6464 3863 412 0 1 93 1 7 10 23 18 685 8 9 8 1 0 345 2 3 198 0 1 108 16 0 945 0 1 189 0 1 61 1 0 142 4 3 28 1 0 260 0 1 147 0 2 171 7 3 78 0 4 43 0 2 376 0 1 512 7 5 96 0 1 753 chain 4982 chr21 46709983 + 25448757 25448822 MLT2C2 476 + 137 202 85743 65 chain 23176 chr21 46709983 + 25452834 25453078 L1HS 6032 + 5788 6032 52109 244 chain 8187 chr21 46709983 + 25493198 25493285 L1PA16 3655 + 2998 3085 74447 87 chain 23918 chr21 46709983 + 25732683 25733014 AluSp 311 + 0 311 50917 37 19 0 39 8 9 111 0 1 54 3 0 60 chain 9437 chr21 46709983 + 25779594 25779701 HERV9-int 5642 + 0 107 71624 107 chain 23726 chr21 46709983 + 25780836 25781136 AluY 311 + 0 305 51236 18 0 5 14 0 1 78 3 1 9 0 1 178 chain 123268 chr21 46709983 + 25847824 25849429 THE1D-int 1627 + 0 1619 14981 38 1 0 150 2 0 149 0 4 84 4 0 123 12 6 22 6 29 763 1 0 6 0 1 244 chain 37929 chr21 46709983 + 25878355 25878906 MER41A 554 + 0 554 36117 373 0 1 22 8 8 14 48 50 86 chain 5327 chr21 46709983 + 25917760 25918358 L1PA8 5853 + 4935 5524 25753 71 8 3 78 8 0 164 0 4 269 chain 554626 chr21 46709983 + 25918373 25924392 L1PA2 6032 + 6 6032 435 668 0 1 20 0 1 45 0 1 230 0 1 2090 1 0 74 0 4 269 0 1 156 1 0 136 1 0 644 1 0 1473 1 0 124 0 2 43 0 1 42 chain 2966 chr21 46709983 + 25924443 25924776 L1PA8 5853 + 5524 5852 25753 39 2 1 44 1 0 71 1 0 9 2 1 71 1 0 92 chain 19867 chr21 46709983 + 25986433 25986703 AluSp 311 + 10 285 56585 42 8 23 49 14 4 157 chain 8692 chr21 46709983 + 25990881 25991061 L1PB3 3668 + 3401 3562 73231 60 0 1 16 51 33 17 3 1 33 chain 24812 chr21 46709983 + 26033124 26033479 THE1C 375 + 0 355 49572 106 8 9 69 15 14 157 chain 13908 chr21 46709983 + 26037051 26037315 L1MA5A 2387 + 2073 2306 63724 35 1 0 6 0 1 42 6 8 22 1 0 28 12 9 8 28 0 63 1 0 11 chain 26809 chr21 46709983 + 26211419 26211765 L1PA6 6164 + 5811 6161 46523 144 0 3 46 16 17 140 chain 120191 chr21 46709983 + 26217453 26218997 THE1B-int 1605 + 18 1594 15503 95 0 3 11 0 1 133 4 3 166 1 26 559 0 1 5 1 0 111 13 17 445 chain 378924 chr21 46709983 + 26306489 26312227 L1PB1 5432 + 253 5411 5503 155 1 2 180 2 6 130 0 5 674 15 0 112 0 1 8 1 2 88 7 10 25 1 0 4 0 1 54 0 1 128 5 3 6 3 0 378 0 4 22 1 0 79 4 11 89 1 0 7 0 1 59 4 0 19 18 18 307 1 0 253 1 0 62 1 7 253 0 1 68 4 1 236 25 14 18 0 4 452 1 0 99 2 0 289 7 27 82 0 1 273 0 1 12 2 1 5 0 1 96 569 7 9 3 0 21 1 0 12 16 11 9 2 0 53 2 1 16 1 0 44 45 32 14 3 1 4 1 0 14 2 0 24 1 0 10 12 11 13 1 0 7 chain 32638 chr21 46709983 + 26359443 26359821 L1PA3long 6157 + 5781 6152 39824 221 7 0 150 chain 20771 chr21 46709983 + 26382302 26382672 THE1C 375 + 0 375 55406 27 0 1 56 40 41 26 36 36 65 0 1 97 1 3 22 chain 19449 chr21 46709983 + 26399877 26400249 MSTA 426 + 0 414 57089 103 17 41 83 88 106 81 chain 25682 chr21 46709983 + 26513781 26514074 L1PA4 6152 + 5859 6152 48197 7 1 0 172 0 1 113 chain 15037 chr21 46709983 + 26651669 26651830 L1PA2 6032 + 5869 6030 62217 161 chain 14718 chr21 46709983 + 26659265 26659479 MER61D 487 + 0 274 62650 145 31 91 38 chain 11193 chr21 46709983 + 26714548 26714846 MLT1C 463 + 6 309 68253 13 1 2 27 1 3 4 1 0 70 0 1 30 0 1 8 2 0 6 111 114 24 chain 58239 chr21 46709983 + 26854436 26855185 LTR17 781 + 0 781 26885 251 7 8 67 0 1 85 2 0 110 0 1 21 7 21 21 1 2 126 0 22 27 10 4 14 chain 12821 chr21 46709983 + 26856921 26857100 HERV17-int 4347 + 19 193 65413 8 1 0 50 6 5 30 2 0 27 1 0 54 chain 312620 chr21 46709983 + 26857106 26860723 HERV17-int 4347 + 21 3650 6556 6 1 0 51 1 0 37 2 0 24 1 0 49 0 1 104 8 1 1174 0 1 1143 0 16 144 0 1 451 0 5 398 0 1 4 1 0 18 chain 62841 chr21 46709983 + 26861271 26862006 LTR17 781 + 0 781 25670 326 0 1 365 0 1 17 5 49 22 chain 4945 chr21 46709983 + 26866731 26866788 MER51A 677 + 199 256 85910 57 chain 42257 chr21 46709983 + 26891421 26891976 MLT2A2 560 + 0 560 33214 41 0 2 132 0 1 14 3 0 5 0 3 6 3 4 17 1 2 333 chain 6497 chr21 46709983 + 26892617 26892923 MER33 330 + 6 319 79362 51 192 192 4 1 0 42 2 10 14 chain 87553 chr21 46709983 + 26897374 26898370 L1P1 4361 + 2530 3526 20126 996 chain 74783 chr21 46709983 + 27025333 27026375 MER11C 1089 + 2 1063 22895 245 0 9 61 4 8 60 1 0 178 41 36 85 7 11 4 1 0 38 0 1 32 1 8 85 0 1 56 10 9 108 0 1 25 chain 30859 chr21 46709983 + 27051909 27052304 MLT2A1 477 + 2 398 41261 140 0 1 19 8 12 5 1 0 114 0 1 91 4 0 13 chain 430490 chr21 46709983 + 27052978 27058576 HERVL-int 5654 + 20 5654 4742 219 0 7 169 0 9 149 22 18 62 4 0 42 5 0 236 2 0 19 4 9 23 29 8 10 12 33 42 7 8 37 1 0 10 1 0 384 0 1 210 0 2 77 9 24 70 5 6 30 10 9 600 1 0 78 0 5 30 0 13 34 1 0 55 5 2 423 17 18 580 9 6 103 20 25 108 0 1 6 2 1 112 0 1 553 23 15 116 9 4 6 0 5 481 0 1 99 0 1 4 0 2 223 chain 35230 chr21 46709983 + 27070055 27070441 L1PA2 6032 + 5646 6032 37877 386 chain 29468 chr21 46709983 + 27076874 27077303 MLT2A1 477 + 3 477 42647 68 0 1 45 1 0 4 6 7 14 0 1 24 2 6 178 0 1 33 15 49 33 0 4 6 chain 5727 chr21 46709983 + 27086733 27086847 MADE1 96 + 1 96 82233 41 36 17 37 chain 10365 chr21 46709983 + 27137985 27138114 MER85 139 + 0 139 69678 89 0 10 40 chain 13683 chr21 46709983 + 27148070 27148239 THE1B 368 + 200 368 64035 40 1 0 128 chain 43103 chr21 46709983 + 27199650 27200195 L1PA8 5853 + 5315 5853 32710 58 0 1 188 1 0 47 2 0 69 13 10 52 2 1 19 1 0 93 chain 10307 chr21 46709983 + 27248118 27248276 Tigger2 2703 + 2285 2449 69798 53 7 9 19 1 4 5 3 0 34 0 4 36 chain 23680 chr21 46709983 + 27468433 27468724 AluY 311 + 9 297 51305 15 4 0 93 0 1 14 0 1 69 1 0 95 chain 45365 chr21 46709983 + 27522106 27522643 L1PA6 6164 + 5617 6154 31386 537 chain 102778 chr21 46709983 + 27542024 27543356 L1PA8 5853 + 4515 5853 17977 61 0 1 171 1 0 110 7 13 136 0 2 73 0 2 218 1 0 78 0 1 131 0 2 50 1 0 44 2 0 68 20 19 45 2 1 19 1 0 93 chain 93824 chr21 46709983 + 27543993 27545019 L1PA3long 6157 + 5130 6157 19063 884 1 2 141 chain 222333 chr21 46709983 + 27575811 27578236 L1PA2 6032 + 3606 6029 8972 639 0 2 1529 2 1 237 3 0 15 chain 53268 chr21 46709983 + 27592221 27592941 L1PA7 6471 + 5834 6459 28477 111 99 4 510 chain 13356 chr21 46709983 + 27628653 27628984 L1PB1 5432 + 5114 5412 64532 16 15 13 16 4 0 9 2 0 35 3 1 16 2 1 14 2 1 46 43 30 14 3 1 5 1 0 14 3 1 26 1 0 18 1 0 13 1 0 8 chain 24169 chr21 46709983 + 27629029 27629337 L1P2 5180 + 2017 2316 50542 155 10 1 143 chain 128057 chr21 46709983 + 27661165 27662637 L1P1 4361 + 2868 4341 14272 378 0 4 426 1 0 474 1 0 58 0 1 96 1 0 23 2 1 12 chain 21684 chr21 46709983 + 27687437 27687685 AluYc 301 + 37 285 54247 248 chain 68188 chr21 46709983 + 27711395 27712144 L1PA3long 6157 + 5082 5830 24410 744 1 0 4 chain 32846 chr21 46709983 + 27732681 27733055 L1PA7 6471 + 6086 6461 39632 229 0 1 145 chain 70016 chr21 46709983 + 27768740 27769541 L1PA7 6471 + 4595 5412 23993 131 0 15 419 0 1 251 chain 173670 chr21 46709983 + 27790202 27792961 L1PA11 4918 + 1986 4504 10913 121 329 0 95 8 6 10 22 23 274 47 51 13 0 1 140 2 0 191 2 1 44 0 1 715 1 0 167 0 70 98 1 9 10 0 1 42 0 1 258 5 0 27 10 27 11 2 1 13 2 0 68 7 5 8 1 0 10 0 1 5 chain 35977 chr21 46709983 + 27850016 27850409 L1PA4 6152 + 5753 6146 37423 393 chain 20792 chr21 46709983 + 27866916 27867232 THE1B 368 + 0 310 55372 169 1 0 23 8 3 5 1 0 9 0 4 19 19 17 57 1 0 4 chain 116139 chr21 46709983 + 27914592 27916215 THE1A-int 1579 + 9 1579 16202 35 0 1 96 86 10 19 1 2 118 12 13 37 13 17 45 1 2 36 0 2 60 5 4 187 0 11 209 1 3 657 0 1 5 chain 24881 chr21 46709983 + 27916215 27916563 THE1A 353 + 0 347 49470 106 13 11 62 3 4 164 chain 75995 chr21 46709983 + 27960123 27961130 MER11A 1151 + 12 1151 22569 59 1 100 56 3 1 66 4 0 149 0 1 94 0 1 269 19 54 58 0 1 14 1 2 30 1 0 16 4 5 163 chain 6820 chr21 46709983 + 28014999 28015083 MER72 723 + 639 723 78237 84 chain 176030 chr21 46709983 + 28027246 28029512 HERVL-int 5654 + 3354 5644 10778 91 8 1 266 0 9 281 21 21 95 0 1 61 1 0 6 0 1 311 4 19 710 1 0 56 0 3 70 0 3 19 0 1 265 chain 23527 chr21 46709983 + 28029538 28029958 MLT2A2 560 + 17 558 51541 145 74 72 67 0 2 6 16 124 25 0 5 37 0 8 50 chain 12103 chr21 46709983 + 28040952 28041127 THE1D-int 1627 + 1422 1600 66659 62 0 1 79 0 1 4 10 8 14 0 3 6 chain 12010 chr21 46709983 + 28050035 28050211 L1PA8 5853 + 5684 5853 66824 4 1 0 25 4 0 29 1 0 18 8 7 86 chain 69741 chr21 46709983 + 28072192 28073261 MER11B 1079 + 0 1065 24055 354 3 6 65 13 12 99 1 2 4 1 0 27 4 0 6 71 75 90 13 3 11 0 1 4 1 0 7 6 8 46 5 6 41 0 1 16 4 5 162 1 0 14 chain 49214 chr21 46709983 + 28096848 28097476 L1PA8 5853 + 5215 5836 29860 349 1 0 44 3 1 70 1 0 9 1 0 56 2 1 15 2 1 75 chain 29540 chr21 46709983 + 28161433 28161837 LTR7 482 + 0 477 42559 10 0 1 58 8 46 109 8 40 18 1 0 25 0 1 12 0 2 155 chain 262786 chr21 46709983 + 28161844 28165243 HERVH-int 3825 + 0 3825 7884 56 1 4 273 1 0 66 123 352 12 0 2 15 2 0 7 3 8 163 9 8 270 28 3 98 6 1 93 9 0 24 0 2 13 1 0 309 0 1 312 0 5 204 0 1 42 0 10 94 0 3 93 1 0 5 4 1 520 16 19 31 8 218 101 3 0 6 1 4 376 chain 30201 chr21 46709983 + 28166497 28166912 LTR7 482 + 0 470 41849 69 8 46 109 0 1 8 0 31 48 2 0 46 13 0 112 chain 20849 chr21 46709983 + 28177608 28177842 L1PA5 6144 + 5910 6144 55310 234 chain 5597 chr21 46709983 + 28202239 28202329 L1MA1 4479 - 987 1075 82818 38 15 13 37 chain 32183 chr21 46709983 + 28262688 28263118 MER57A1 433 + 0 433 40204 16 0 1 253 12 13 32 0 1 117 chain 3336 chr21 46709983 + 28288612 28288662 MLT1C 463 + 54 97 96719 12 7 0 31 chain 388067 chr21 46709983 + 28301380 28306857 HERVL-int 5654 + 0 5652 5352 116 280 0 56 0 17 55 0 1 175 0 2 718 0 4 61 3 0 99 3 1 65 20 17 515 1 2 307 0 1 286 0 1 189 292 47 1302 3 1 263 4 7 207 1 0 123 0 1 70 6 669 58 6 13 127 3 13 63 chain 17281 chr21 46709983 + 28304338 28304565 HERVL-int 5654 + 3065 4018 59481 132 3 729 92 chain 31646 chr21 46709983 + 28353549 28353908 L1PA3long 6157 + 5782 6156 40630 114 0 15 245 chain 29112 chr21 46709983 + 28376793 28377182 MER51B 395 + 0 386 43169 213 2 0 30 15 14 129 chain 38289 chr21 46709983 + 28472444 28473041 L1PA16 3655 + 2761 3370 35848 142 1 0 10 14 13 16 8 0 48 0 21 72 7 9 112 7 6 49 3 6 26 2 0 43 6 5 31 chain 20901 chr21 46709983 + 28501735 28501959 AluYb8 318 + 91 314 55251 32 1 0 191 chain 124174 chr21 46709983 + 28558004 28559703 L1PA10 4194 + 2478 4161 14818 151 0 1 27 10 0 19 11 15 271 1 0 371 2 1 346 0 1 155 7 8 211 44 47 12 8 5 24 6 1 6 6 0 11 chain 94840 chr21 46709983 + 28563213 28564788 SVA_A 1864 + 25 1847 18929 13 39 9 46 0 11 73 2 0 388 25 24 11 25 22 15 0 111 50 0 184 39 3 0 38 80 0 34 99 111 74 4 38 29 16 32 20 7 8 8 1 0 71 3 1 362 chain 13160 chr21 46709983 + 28604269 28604419 L1PA6 6164 + 6012 6161 64841 135 1 0 14 chain 224141 chr21 46709983 + 28608985 28612657 L1PBa 3878 + 101 3748 8924 45 11 6 5 0 1 5 1 0 50 1 0 4 8 17 217 0 1 50 0 1 19 1 0 169 15 5 65 4 2 210 13 21 301 0 1 6 6 5 28 7 9 102 0 2 159 0 3 4 1 0 8 6 5 24 5 0 6 4 9 94 0 7 256 0 1 145 2 0 281 4 5 9 1 0 59 540 520 12 15 18 25 5 0 124 4 1 61 7 0 166 1 0 267 6 5 16 2 0 10 chain 155412 chr21 46709983 + 28622087 28623989 L1PA7 6471 + 4567 6468 12044 549 5 4 139 3 0 310 17 11 41 0 3 14 0 1 6 1 2 63 0 1 446 0 1 149 11 10 56 0 1 82 0 2 10 chain 2819 chr21 46709983 + 28627829 28627863 MER51A 677 + 220 254 101535 34 chain 68183 chr21 46709983 + 28630187 28630939 L1PA4 6152 + 5399 6151 24413 752 chain 12357 chr21 46709983 + 28665426 28665560 L1HS 6032 + 5847 5981 66220 134 chain 41133 chr21 46709983 + 28673907 28674441 MER41A 554 + 0 542 33895 378 1 0 19 8 12 59 9 14 60 chain 541492 chr21 46709983 + 28676917 28683057 L1PA4 6152 + 6 6143 1238 1037 0 2 187 4 5 160 9 0 8 2 11 949 0 1 166 6 0 1781 0 1 342 0 1 1331 0 6 112 9 0 37 chain 17523 chr21 46709983 + 28731569 28731766 L1PA3long 6157 + 5960 6157 59213 197 chain 31650 chr21 46709983 + 28759217 28759603 THE1B-int 1605 + 1218 1605 40625 167 0 1 219 chain 16348 chr21 46709983 + 28759603 28759925 THE1B 368 + 30 359 60574 77 14 16 45 68 74 64 7 6 47 chain 1590 chr21 46709983 + 28765879 28765927 L1PB2 3958 + 3476 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102 11 4 108 10 9 364 chain 170014 chr21 46709983 + 29010642 29012782 SVA_D 2077 + 16 2072 11104 16 7 0 691 14 17 18 9 6 139 2 83 48 1 2 323 176 0 84 1 0 12 1 19 598 chain 6198 chr21 46709983 + 29011910 29011987 SVA_D 2077 + 1005 1084 43130 29 2 4 46 chain 5818 chr21 46709983 + 29011987 29012084 SVA_D 2077 + 1211 1308 39833 97 chain 4346 chr21 46709983 + 29094694 29094769 MER76 683 + 96 170 89203 41 15 14 19 chain 9408 chr21 46709983 + 29168678 29168796 MER85 139 + 2 132 71680 34 0 2 56 0 10 28 chain 5204 chr21 46709983 + 29190542 29190601 MER53 195 + 0 59 84660 59 chain 10943 chr21 46709983 + 29233904 29234099 LTR24C 604 + 0 188 68626 58 0 1 4 1 0 6 1 0 49 41 35 35 chain 12994 chr21 46709983 + 29244418 29244614 L1MA3 4352 + 4123 4311 65119 112 4 0 24 4 2 21 1 0 6 1 0 23 chain 3884 chr21 46709983 + 29257650 29257691 MLT2A2 560 + 519 560 92266 41 chain 3804 chr21 46709983 + 29270066 29270112 MER81 114 + 16 62 92814 46 chain 6270 chr21 46709983 + 29337651 29337742 L1PA6 6164 + 5957 6103 80091 58 3 4 22 0 54 8 chain 20913 chr21 46709983 + 29363734 29364091 THE1C 375 + 0 368 55239 14 2 0 33 1 2 124 64 76 119 chain 26428 chr21 46709983 + 29397234 29397616 THE1D 372 + 0 372 47087 75 19 0 107 8 11 45 2 8 126 chain 29774 chr21 46709983 + 29403831 29404206 THE1C 375 + 0 375 42273 127 11 12 210 1 0 26 chain 39052 chr21 46709983 + 29405063 29405602 THE1C-int 1605 + 86 692 35318 17 1 58 9 4 1 144 12 18 107 11 18 234 chain 57766 chr21 46709983 + 29415167 29415901 L1PA6 6164 + 5359 6162 27028 45 0 1 98 0 5 479 5 68 107 chain 117193 chr21 46709983 + 29421290 29422545 L1PA2 6032 + 3565 4820 16024 1255 chain 12935 chr21 46709983 + 29443040 29443197 THE1C 375 + 0 162 65195 22 0 5 135 chain 30688 chr21 46709983 + 29444183 29444730 L1PB1 5432 + 4908 5422 41394 195 3 2 8 2 1 24 1 0 8 1 0 10 2 0 3 2 0 9 2 0 52 18 16 44 1 0 12 28 16 18 25 20 24 1 0 21 1 0 13 1 0 18 chain 3026 chr21 46709983 + 29481133 29481222 MADE1 96 + 0 96 99536 20 30 36 9 0 1 30 chain 3240 chr21 46709983 + 29514057 29514157 MER61E 571 + 203 311 97575 26 50 58 24 chain 38765 chr21 46709983 + 29618284 29619624 L1PB1 5432 + 4740 5424 35521 64 2 0 8 1 3 220 5 4 64 1 2 9 5 0 24 1 0 9 1 0 11 5 1 10 3 1 8 1 0 8 1 0 32 1 0 19 2 1 46 699 63 10 0 1 12 1 0 21 1 0 13 1 0 14 1 0 6 chain 22617 chr21 46709983 + 29641175 29641518 THE1B 368 + 0 356 52961 105 9 10 54 1 0 32 0 1 12 18 31 61 7 6 44 chain 5112 chr21 46709983 + 29801245 29801314 MADE1 96 + 11 96 85094 20 1 17 48 chain 33112 chr21 46709983 + 29859001 29859367 L1PA5 6144 + 5773 6139 39425 366 chain 341877 chr21 46709983 + 29900029 29904285 L1PA7 6471 + 2246 6468 6026 40 45 1 347 11 0 72 0 4 26 8 11 610 11 1 36 0 1 89 1 2 4 1 0 80 0 3 353 1 0 83 2 0 65 0 1 39 0 1 553 0 4 255 9 21 673 2 0 79 0 2 203 1 9 393 0 1 57 4 5 91 5 0 7 chain 30065 chr21 46709983 + 30040699 30041122 LTR7B 505 + 0 497 41989 105 0 10 60 0 38 12 3 27 26 0 2 38 0 1 34 10 9 26 0 1 52 14 13 43 chain 49631 chr21 46709983 + 30049774 30050427 PABL_A 660 + 0 660 29707 25 26 30 531 4 7 67 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275716 chr21 46709983 + 30727431 30730806 L1PA7 6471 + 3079 6464 7558 418 1 0 93 3 0 94 4 2 4 0 1 133 6 5 126 0 1 302 1 2 365 1 0 43 0 4 17 0 1 936 0 6 577 0 1 9 0 2 91 3 4 148 chain 6122 chr21 46709983 + 30789561 30789897 MLT1B 390 + 0 346 80643 24 2 0 16 176 189 18 34 33 20 1 0 11 7 8 27 chain 94830 chr21 46709983 + 30803844 30804959 L1PA6 6164 + 4988 6106 18933 308 2 1 18 0 3 212 0 1 575 chain 77216 chr21 46709983 + 30841029 30841858 L1HS 6032 + 5204 6032 22261 806 1 0 22 chain 108065 chr21 46709983 + 30853127 30854370 L1PA5 6144 + 4900 6142 17316 141 0 1 483 0 1 279 1 0 330 2 0 7 chain 4952 chr21 46709983 + 30874924 30874986 MLT1B 390 + 328 390 85881 62 chain 21589 chr21 46709983 + 30927951 30928340 L1PA11 4918 + 4196 4567 54376 99 14 19 11 1 0 68 2 1 13 3 0 67 2 0 14 6 5 18 19 9 10 13 9 15 1 0 13 chain 62131 chr21 46709983 + 30930578 30931275 L1PA3long 6157 + 5459 6157 25838 353 0 1 189 0 7 1 7 0 147 chain 37335 chr21 46709983 + 31024828 31025288 LTR2 463 + 0 463 36526 61 0 3 200 1 0 96 14 15 88 chain 19867 chr21 46709983 + 31040325 31040575 LTR8 732 + 8 258 56584 250 chain 7391 chr21 46709983 + 31054114 31054231 MLT1B 390 + 235 354 76416 28 17 19 72 chain 58633 chr21 46709983 + 31066237 31066896 L1PA5 6144 + 5482 6144 26778 4 0 1 81 0 2 574 chain 3793 chr21 46709983 + 31125959 31126063 MADE1 96 - 0 96 92905 16 10 9 21 19 13 25 1 0 12 chain 4245 chr21 46709983 + 31236176 31236229 FordPrefect_a 431 + 302 355 89852 53 chain 15031 chr21 46709983 + 31270619 31270838 MER30 238 + 0 238 62226 35 0 8 64 10 0 7 1 25 60 3 0 39 chain 44472 chr21 46709983 + 31277034 31277846 MER41A 554 + 0 554 31845 274 0 1 53 266 0 15 0 2 123 0 5 81 chain 39410 chr21 46709983 + 31311727 31312268 MLT2A2 560 + 0 552 35072 58 0 1 121 1 0 16 23 22 171 13 24 76 1 2 61 chain 28559 chr21 46709983 + 31350405 31350831 MSTA 426 + 0 426 44018 13 2 0 6 1 3 185 1 0 24 39 40 155 chain 23305 chr21 46709983 + 31391876 31392168 MER47A 366 + 37 329 51922 292 chain 4795 chr21 46709983 + 31423727 31423802 L1MB8 1703 + 1468 1529 86725 53 14 0 8 chain 24622 chr21 46709983 + 31429927 31430226 AluSq2 311 + 1 304 49834 25 0 3 138 1 2 135 chain 39710 chr21 46709983 + 31492132 31492762 MER4A 717 + 3 695 34886 40 0 1 77 2 0 31 0 8 45 7 30 19 7 19 95 36 57 68 26 25 177 chain 2967 chr21 46709983 + 31550275 31550324 L1MB7 1623 + 1455 1499 100211 24 1 0 13 4 0 7 chain 24175 chr21 46709983 + 31570187 31570479 AluSp 311 + 0 293 50531 83 0 3 189 3 0 6 0 1 11 chain 23991 chr21 46709983 + 31575730 31576016 AluSp 311 + 1 284 50805 12 3 0 271 chain 22252 chr21 46709983 + 31608461 31608793 MER4E1 777 + 455 777 53473 70 21 20 30 16 7 195 chain 22968 chr21 46709983 + 31618816 31619177 THE1D 372 + 0 372 52412 72 0 1 5 1 0 24 1 0 4 17 18 65 10 11 83 9 19 70 chain 4979 chr21 46709983 + 31653586 31653644 MER30 238 + 138 196 85755 58 chain 104777 chr21 46709983 + 31654012 31655337 LTR12C 1709 + 0 1709 17716 210 12 13 43 0 1 76 12 16 10 0 1 29 0 1 64 26 28 260 0 366 106 0 4 107 0 1 3 0 4 284 1 0 82 chain 25084 chr21 46709983 + 31745845 31746202 THE1B 368 + 2 368 49144 166 2 1 29 35 45 125 chain 110795 chr21 46709983 + 31765483 31766979 THE1C-int 1605 + 1 1597 16969 15 4 6 74 0 57 17 4 1 156 0 6 107 11 18 181 14 30 345 1 2 134 0 1 44 8 9 249 0 13 97 1 0 34 chain 20954 chr21 46709983 + 31828329 31828698 THE1B 368 + 0 368 55186 177 67 66 63 24 24 38 chain 2884 chr21 46709983 + 31937617 31937648 Kanga2_a 737 + 548 579 100975 31 chain 133683 chr21 46709983 + 32040727 32042354 L1PA8 5853 + 2106 3750 13675 109 0 2 520 1 2 5 1 0 163 0 1 147 0 2 114 0 3 271 0 1 176 0 1 46 3 5 22 0 5 49 chain 9616 chr21 46709983 + 32047962 32048075 L1PA8 5853 + 5741 5853 71230 21 1 0 91 chain 28676 chr21 46709983 + 32051464 32051830 THE1D 372 + 0 372 43837 185 0 8 7 3 0 138 0 1 33 chain 36856 chr21 46709983 + 32104433 32104931 MER1A 529 + 30 529 36841 27 2 1 109 1 4 159 1 2 120 3 0 5 2 3 69 chain 3085 chr21 46709983 + 32130664 32130699 MLT1H2 457 + 90 125 98934 35 chain 4769 chr21 46709983 + 32151906 32152006 MADE1 96 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46 65 53 1 0 58 chain 43584 chr21 46709983 + 32462541 32463055 MER9a3 513 + 0 513 32392 258 1 0 255 chain 6179 chr21 46709983 + 32463120 32463200 MADE1 96 + 1 96 80428 33 0 15 47 chain 27210 chr21 46709983 + 32530820 32531168 THE1B 368 + 6 368 45952 38 12 27 106 1 0 191 chain 21567 chr21 46709983 + 32556979 32557323 PABL_A-int 1935 + 514 849 54413 11 12 1 20 5 6 44 10 12 6 4 0 220 0 3 12 chain 33713 chr21 46709983 + 32561569 32562002 MER4A1 472 + 1 472 38911 95 1 0 128 3 40 127 7 9 72 chain 341888 chr21 46709983 + 32660023 32664299 HERVE_a-int 7009 + 2790 7008 6025 188 1 0 85 2 1 497 1 0 964 0 5 302 0 1 90 0 1 341 2 1 47 9 0 18 0 5 99 0 2 16 1 0 9 2 1 57 0 5 11 1 0 7 1 0 41 1 0 23 1 0 87 1 0 12 1 0 258 2 0 102 1 0 15 1 0 3 1 0 57 2 0 20 1 0 12 1 0 76 15 13 129 1 0 43 6 5 26 1 0 9 2 1 16 1 0 5 2 0 7 1 0 37 1 0 21 1 0 47 1 0 4 1 0 23 12 9 55 2 1 6 4 0 29 3 0 54 3 1 27 1 0 30 1 0 6 17 14 25 2 0 33 5 3 14 34 26 19 6 4 4 1 0 13 chain 3448 chr21 46709983 + 32696194 32696240 MER3 215 + 152 200 95665 6 0 2 40 chain 25840 chr21 46709983 + 32767523 32767842 THE1A 353 + 36 353 47954 73 2 1 237 1 0 6 chain 29750 chr21 46709983 + 32814607 32815102 MER1A 529 + 0 495 42306 41 39 55 98 29 9 199 1 5 21 0 1 22 21 20 24 chain 23754 chr21 46709983 + 32816724 32817105 MSTA 426 + 7 417 51188 110 0 15 20 0 4 49 56 63 43 4 7 99 chain 92710 chr21 46709983 + 32823166 32824253 L1PA6 6164 + 5067 6159 19231 16 2 5 80 0 1 72 0 1 917 chain 27644 chr21 46709983 + 32937049 32937414 THE1C 375 + 0 373 45399 131 4 8 48 0 1 88 9 12 85 chain 40168 chr21 46709983 + 32948798 32949333 MER41A 554 + 2 534 34543 182 40 35 86 0 1 121 0 1 106 chain 45608 chr21 46709983 + 32964040 32964589 MER41A 554 + 1 554 31258 92 0 1 224 0 1 58 0 1 7 0 1 168 chain 10776 chr21 46709983 + 32967294 32967434 MER50 708 + 65 199 68909 32 6 0 102 chain 70471 chr21 46709983 + 32996299 32997287 LTR5B 1012 + 0 1012 23875 81 16 27 20 1 14 197 2 1 26 18 17 105 1 0 95 15 16 35 10 10 359 0 2 7 chain 3262 chr21 46709983 + 33051108 33051144 MADE1 96 - 4 40 97360 36 chain 27272 chr21 46709983 + 33062201 33062514 L1PA5 6144 + 5836 6143 45862 299 6 0 8 chain 14540 chr21 46709983 + 33181266 33181556 L1PB1 5432 + 5115 5376 62855 23 1 0 4 3 2 14 5 1 9 2 0 52 2 1 15 1 0 45 1 0 15 2 0 6 23 13 9 2 0 8 1 0 14 2 0 24 1 0 6 chain 9146 chr21 46709983 + 33205433 33205535 MER30 238 + 136 238 72242 102 chain 6034 chr21 46709983 + 33217622 33217730 MER57-int 2662 + 2559 2659 80946 24 1 0 6 17 13 23 3 0 34 chain 8938 chr21 46709983 + 33240851 33240975 L1PB4 2604 + 2395 2529 72692 31 0 1 61 2 7 15 0 4 15 chain 3872 chr21 46709983 + 33257909 33257957 MLT1D 503 + 0 49 92343 25 0 1 23 chain 6556 chr21 46709983 + 33300803 33300879 MER41B 635 + 2 78 79139 76 chain 37299 chr21 46709983 + 33317977 33318574 MER50B 698 + 29 612 36549 51 4 7 22 23 32 24 0 1 31 0 3 11 40 31 188 20 0 13 0 1 37 3 2 52 1 0 77 chain 8677 chr21 46709983 + 33362773 33362942 MER21B 843 + 659 827 73269 38 21 26 23 11 8 55 3 0 18 chain 32114 chr21 46709983 + 33396190 33396637 MER1A 529 + 97 529 40261 37 3 9 309 17 0 13 4 0 64 chain 6259 chr21 46709983 + 33507873 33508017 L1MA3 4352 + 4208 4320 80129 52 2 0 22 12 10 16 28 0 12 chain 12280 chr21 46709983 + 33598711 33598921 MER30 238 + 0 237 66314 14 9 23 41 0 1 21 10 0 17 11 32 60 0 1 27 chain 22597 chr21 46709983 + 33676904 33677166 L1PA5 6144 + 5882 6143 52990 209 1 0 52 chain 28099 chr21 46709983 + 33807903 33808206 AluYb8 318 + 0 301 44719 132 2 0 169 chain 27738 chr21 46709983 + 33937921 33938395 MER57A1 433 + 38 431 45268 44 32 8 189 0 1 10 13 3 18 0 1 4 50 1 114 chain 3289 chr21 46709983 + 33939879 33939919 L1MB7 1623 + 1452 1491 97111 27 1 0 12 chain 3613 chr21 46709983 + 34002033 34002111 MER33 330 + 14 103 94325 21 22 33 35 chain 5623 chr21 46709983 + 34013470 34013535 MER5A 189 + 0 65 82698 65 chain 20594 chr21 46709983 + 34050388 34050638 AluSp 311 + 29 277 55647 96 2 0 152 chain 82381 chr21 46709983 + 34138433 34139338 L1PA3long 6157 + 5239 6149 21158 71 0 4 509 0 1 325 chain 9027 chr21 46709983 + 34229036 34229145 L1MB3 1562 + 801 910 72501 109 chain 5106 chr21 46709983 + 34242500 34242569 L1MC1 2226 + 1980 2047 85130 15 2 0 52 chain 22968 chr21 46709983 + 34312288 34312858 L1MC1 2226 + 1663 2195 52408 29 12 16 10 6 1 123 8 6 6 1 0 32 8 7 24 1 0 63 3 0 14 2 0 30 156 130 30 1 0 11 chain 5610 chr21 46709983 + 34315227 34315307 MLT1D 503 + 399 481 82761 7 1 0 52 1 4 19 chain 26505 chr21 46709983 + 34352562 34352995 MSTA 426 + 3 426 46974 23 1 2 22 1 0 78 3 0 65 48 52 108 20 9 64 chain 7338 chr21 46709983 + 34439356 34439723 MLT2A1 477 + 320 477 76553 64 266 56 37 chain 12470 chr21 46709983 + 34441037 34441204 MER6A 605 + 360 531 66031 74 2 1 9 0 4 17 0 1 65 chain 29379 chr21 46709983 + 34476705 34477037 L1PA5 6144 + 5792 6128 42772 13 0 1 187 0 3 132 chain 25741 chr21 46709983 + 34481226 34481504 AluYb9 318 + 34 312 48106 278 chain 29761 chr21 46709983 + 34491625 34492067 MLT2A1 477 + 0 477 42288 153 15 17 11 0 1 12 0 1 9 0 3 86 19 9 81 0 2 12 7 43 37 chain 28520 chr21 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31679 chr21 46709983 + 41422023 41422433 MER41A 554 + 17 428 40599 31 0 1 86 3 0 125 0 1 49 3 0 55 0 1 43 0 4 15 chain 13159 chr21 46709983 + 41461947 41462106 THE1B 368 + 209 368 64842 159 chain 3047 chr21 46709983 + 41476836 41476868 MIR 256 + 76 108 99337 32 chain 4929 chr21 46709983 + 41477416 41477533 MER90 571 + 255 374 86001 26 49 51 42 chain 19468 chr21 46709983 + 41552541 41552843 L1PA15 4387 + 3861 4180 57074 29 2 0 21 0 2 19 1 0 80 4 1 32 1 24 35 2 1 26 9 8 41 chain 40249 chr21 46709983 + 41588510 41588973 LTR2 463 + 0 463 34479 463 chain 18485 chr21 46709983 + 41594980 41595243 L1PA8 5853 + 5595 5853 58120 13 2 0 72 1 0 8 1 0 72 8 7 86 chain 31134 chr21 46709983 + 41595695 41596038 L1PA2 6032 + 5685 6027 41027 25 1 0 317 chain 27025 chr21 46709983 + 41700350 41700704 THE1A 353 + 0 353 46235 110 1 0 54 0 1 31 3 2 155 chain 39446 chr21 46709983 + 41714483 41714993 LTR6B 557 + 0 557 35048 22 0 28 22 0 15 272 0 1 124 15 17 33 0 1 22 chain 47544 chr21 46709983 + 41795915 41796524 LTR71B 605 + 0 605 30463 142 6 0 10 0 1 198 1 2 252 chain 4281 chr21 46709983 + 41883028 41883078 MIR 256 + 83 133 89618 50 chain 53142 chr21 46709983 + 41949526 41950147 L1PA6 6164 + 5541 6162 28517 164 0 2 404 0 1 39 3 0 11 chain 112539 chr21 46709983 + 41995115 41996711 THE1B-int 1605 + 0 1605 16744 268 0 2 128 63 89 142 6 8 69 0 1 6 2 1 203 61 41 6 0 1 11 1 0 197 1 0 155 2 1 10 6 7 249 1 0 4 0 1 5 chain 76159 chr21 46709983 + 42036582 42037541 L1PA8 5853 + 4876 5828 22524 133 2 0 555 1 0 45 2 0 49 0 1 19 2 1 8 5 4 9 0 1 39 2 1 19 2 1 67 chain 21897 chr21 46709983 + 42186006 42186344 THE1B 368 + 0 368 53972 40 0 15 120 1 0 23 8 6 10 16 28 35 9 15 76 chain 26656 chr21 46709983 + 42215913 42216271 THE1B 368 + 0 368 46751 169 1 0 31 1 0 14 17 29 125 chain 4784 chr21 46709983 + 42626570 42626686 MLT1A 405 + 116 263 86773 21 50 81 45 chain 14469 chr21 46709983 + 42728100 42728290 MER2 342 + 131 319 62938 164 2 0 24 chain 22082 chr21 46709983 + 42773534 42773812 AluY 311 + 9 294 53725 44 0 1 11 0 5 48 8 9 167 chain 65063 chr21 46709983 + 42778515 42779218 SVA_E 1901 + 1097 1879 25173 53 0 1 16 0 78 634 chain 40418 chr21 46709983 + 42795352 42795860 LTR10D 510 + 0 510 34369 64 14 19 80 0 1 182 5 0 35 0 1 128 chain 25384 chr21 46709983 + 42811741 42812203 LTR21A 479 + 2 479 48646 31 30 0 18 9 47 159 20 0 51 10 38 76 34 33 24 chain 40314 chr21 46709983 + 42812433 42812948 LTR10C 591 + 0 589 34436 13 1 0 93 0 72 75 8 7 240 8 10 30 0 1 29 0 1 18 chain 62501 chr21 46709983 + 42821629 42822588 L1M1 2793 + 811 1766 25752 20 2 0 8 1 0 53 6 4 5 1 0 102 1 0 177 1 0 71 53 47 36 0 1 37 0 1 21 1 2 117 1 7 143 12 1 31 6 4 11 0 14 42 chain 87273 chr21 46709983 + 42874075 42875125 MER11C 1089 + 0 1073 20179 247 0 9 57 0 4 50 0 1 195 21 23 103 1 5 43 0 1 13 0 1 113 0 1 207 chain 3389 chr21 46709983 + 42925913 42925960 MER4A1 472 + 409 455 96196 32 2 1 13 chain 35626 chr21 46709983 + 42935905 42936428 Harlequin-int 5206 + 4616 5122 37647 145 35 9 144 26 35 173 chain 48912 chr21 46709983 + 42936444 42937000 LTR6B 557 + 0 557 29975 273 4 6 122 1 0 156 chain 35249 chr21 46709983 + 42937595 42938062 MER4A1 472 + 0 462 37864 22 12 4 239 0 1 133 1 3 60 chain 14940 chr21 46709983 + 42941241 42941432 MER41A 554 + 0 190 62335 68 4 3 119 chain 25665 chr21 46709983 + 42956870 42957321 MER4A 717 + 66 462 48219 37 52 49 65 0 1 55 0 2 53 55 0 134 chain 38289 chr21 46709983 + 42971109 42971768 MER41B 635 + 11 627 35849 81 1 0 31 0 4 41 0 6 202 0 41 8 31 0 20 110 44 58 0 5 71 1 0 4 chain 6891 chr21 46709983 + 43032538 43032620 FAM 185 + 69 151 77987 82 chain 5842 chr21 46709983 + 43068014 43068085 MER92B 628 + 163 234 81726 71 chain 24520 chr21 46709983 + 43078381 43078666 AluSc5 308 + 8 293 49997 285 chain 3138 chr21 46709983 + 43116545 43116578 MER34C 514 + 131 164 98485 33 chain 89425 chr21 46709983 + 43123151 43124189 L1P1 4361 + 621 3534 19770 505 0 1875 533 chain 5321 chr21 46709983 + 43127327 43127391 LTR23 429 + 9 73 84091 64 chain 47373 chr21 46709983 + 43133799 43134403 PABL_A 660 + 0 607 30512 422 0 3 161 1 0 4 1 2 15 chain 3300 chr21 46709983 + 43146928 43146987 L1MB3 1562 + 1490 1549 97009 13 5 6 14 1 0 26 chain 16691 chr21 46709983 + 43405281 43405617 L1PB1 5432 + 5114 5418 60162 22 1 0 10 1 0 10 10 6 7 2 0 51 2 1 15 1 0 44 1 0 16 3 0 6 19 9 16 3 1 4 1 0 14 2 0 24 1 0 20 6 5 9 1 0 14 chain 4971 chr21 46709983 + 43454383 43454438 MLT1C 463 + 57 112 85792 55 chain 3380 chr21 46709983 + 43497594 43497631 L1MB3 1562 + 1267 1304 96293 37 chain 38928 chr21 46709983 + 43507144 43507619 LTR15 485 + 0 485 35410 53 0 4 92 0 2 56 0 5 269 1 0 4 chain 48144 chr21 46709983 + 43518613 43520212 MER4A 717 + 0 717 30240 59 581 0 18 0 8 43 3 0 23 0 23 168 1 0 4 312 0 45 7 5 92 1 0 4 2 0 5 35 25 189 1 0 6 chain 55432 chr21 46709983 + 43525471 43526374 MER4D1 891 + 0 891 27740 101 38 0 102 17 30 139 1 0 21 12 22 14 1 0 21 0 3 93 17 32 82 3 0 6 53 44 111 1 0 70 chain 52503 chr21 46709983 + 43530581 43531281 MER4E1 777 + 0 777 28733 121 0 4 204 0 19 42 0 1 26 0 1 4 1 0 14 0 1 43 0 18 43 3 0 6 14 21 85 4 5 27 0 27 56 0 2 7 chain 58196 chr21 46709983 + 43538940 43539706 MER4E 760 + 0 760 26902 23 2 1 345 0 2 61 1 0 115 1 2 98 6 5 37 6 0 71 chain 33837 chr21 46709983 + 43577650 43578106 LTR7B 505 + 0 492 38823 208 28 49 150 0 1 5 2 1 20 3 20 26 2 0 12 chain 46895 chr21 46709983 + 43698519 43699073 LTR14 556 + 0 556 30701 141 0 2 413 chain 24272 chr21 46709983 + 43711450 43711737 AluY 311 + 14 304 50388 231 1 0 23 0 4 32 chain 22351 chr21 46709983 + 43711921 43712215 AluSp 311 + 11 299 53341 94 0 2 21 6 0 128 5 3 40 chain 45861 chr21 46709983 + 43738447 43739417 LTR14 556 + 0 556 31126 461 414 0 95 chain 11189 chr21 46709983 + 43781967 43782240 LTR56 451 + 37 324 68262 40 116 128 99 0 2 18 chain 32598 chr21 46709983 + 43784678 43785065 MLT2A1 477 + 0 385 39865 111 0 1 57 4 1 215 chain 4486 chr21 46709983 + 43820458 43820559 MLT1C 463 + 70 163 88415 35 27 18 17 1 0 4 0 2 17 chain 117046 chr21 46709983 + 43821750 43823046 SVA_B 1603 + 185 1603 16047 642 0 40 41 0 82 613 chain 14927 chr21 46709983 + 43850216 43850412 MER4A1 472 + 0 188 62358 44 9 0 110 0 1 33 chain 12422 chr21 46709983 + 44100675 44100872 HSMAR2 1300 + 1 216 66102 25 6 8 28 3 4 17 11 26 107 chain 9260 chr21 46709983 + 44214646 44214754 MER41B 635 + 257 365 72003 108 chain 27193 chr21 46709983 + 44257407 44257693 AluYa5 310 + 8 294 45974 286 chain 7323 chr21 46709983 + 44342939 44343057 MER4E1 777 + 0 115 76590 18 5 0 25 0 3 5 7 8 50 2 0 6 chain 26510 chr21 46709983 + 44346309 44346710 LTR7 482 + 0 474 46968 105 0 60 24 42 22 10 1 2 41 0 31 10 0 1 168 chain 56895 chr21 46709983 + 44471200 44471981 MER4E1 777 + 0 777 27298 17 14 0 30 25 13 34 0 1 116 1 0 4 0 6 106 1 5 35 0 1 77 1 3 15 0 1 74 0 8 231 chain 8316 chr21 46709983 + 44477077 44477214 MER83B-int 1116 + 787 915 74122 18 1 0 59 19 11 40 chain 34616 chr21 46709983 + 44482569 44483016 LTR71B 605 + 20 486 38276 108 3 20 100 0 1 102 1 2 133 chain 184401 chr21 46709983 + 44486256 44490225 HUERS-P2-int 2744 + 17 2742 10367 14 10 5 16 0 2 32 2 0 5 1 0 53 1 0 19 34 27 21 3 4 7 1 0 41 4 1 5 1 0 8 69 50 55 9 0 51 1 0 8 2 0 22 1184 1 32 0 1 29 12 9 218 2 0 291 0 14 132 0 9 107 2 0 30 0 1 264 0 1 47 1 0 90 2 0 242 5 23 177 1 0 71 21 3 109 5 6 46 1 0 23 1 0 72 2 0 31 10 0 21 0 1 14 3 2 10 18 15 11 1 0 39 10 7 27 1 0 9 2 0 5 2 0 11 2 0 28 chain 130605 chr21 46709983 + 44560026 44561663 L1P3 4156 + 2494 4135 13968 137 3 5 463 8 10 385 1 0 187 2 3 94 6 7 206 0 2 114 2 0 7 2 1 20 chain 22986 chr21 46709983 + 44577842 44578186 THE1B 368 + 0 368 52383 44 6 21 106 1 0 27 35 45 125 chain 176583 chr21 46709983 + 44586718 44589139 L1PB1 5432 + 3125 5420 10747 35 10 21 41 0 5 39 0 2 465 0 3 161 0 8 46 5 6 140 0 5 275 0 1 250 4 0 472 0 3 11 129 0 16 5 4 12 1 0 11 4 0 12 2 0 51 2 1 16 1 0 43 1 0 17 13 0 30 3 1 4 1 0 16 2 0 22 1 0 14 9 8 12 1 0 16 chain 92800 chr21 46709983 + 44610072 44611195 THE1A-int 1579 + 409 1573 19215 260 1 6 27 0 38 575 3 1 257 chain 8462 chr21 46709983 + 44674139 44674429 L1MA4A 3247 + 698 987 73768 84 3 0 5 164 166 34 chain 73771 chr21 46709983 + 44705020 44706067 MER11C 1089 + 0 1063 23148 247 0 9 34 23 27 69 1 0 147 67 66 91 1 5 4 1 0 38 0 1 127 0 1 54 1 0 117 0 1 25 chain 8324 chr21 46709983 + 44742673 44742827 MER61-int 3695 + 9 151 74102 13 11 1 23 3 0 19 15 16 70 chain 8436 chr21 46709983 + 44746883 44746982 MER4A1 472 + 0 99 73830 99 chain 28185 chr21 46709983 + 44797434 44797741 AluYg6 310 + 0 307 44588 307 chain 166292 chr21 46709983 + 44824048 44825934 SVA_D 2077 + 6 2061 11317 19 5 0 887 0 186 181 33 20 8 0 1 80 0 1 4 9 8 660 chain 2767 chr21 46709983 + 44825140 44825173 SVA_D 2077 + 962 995 44851 33 chain 80158 chr21 46709983 + 44832390 44833315 LTR13A 966 + 22 966 21599 54 0 4 419 0 5 62 0 10 390 chain 8999 chr21 46709983 + 45046297 45046575 L1MC1 2226 + 1933 2181 72557 46 3 0 16 2 0 50 125 101 6 1 0 29 chain 156547 chr21 46709983 + 45268020 45269793 SVA_D 2077 + 36 2067 11964 16 0 25 124 0 11 549 0 40 77 0 83 73 21 23 246 0 98 623 1 0 43 chain 28314 chr21 46709983 + 45313635 45315147 L1PA10 4194 + 2863 4161 44391 34 0 1 50 1126 915 254 3 0 33 1 0 11 chain 12087 chr21 46709983 + 45400658 45400802 LTR71B 605 + 0 144 66691 144 chain 33831 chr21 46709983 + 45503420 45503799 L1PA3long 6157 + 5781 6157 38825 371 3 0 5 chain 25976 chr21 46709983 + 45593458 45593784 THE1A 353 + 0 353 47755 110 1 0 102 1 29 112 chain 46962 chr21 46709983 + 45628264 45628852 L1PA8A 6298 + 3797 4398 30672 23 0 1 4 3 11 42 5 6 187 0 1 58 0 1 203 1 2 62 chain 88797 chr21 46709983 + 45655601 45656654 L1PA7 6471 + 5402 6470 19890 221 0 5 32 0 11 639 1 2 150 2 0 8 chain 68339 chr21 46709983 + 45662486 45663481 LTR13 1007 + 0 1007 24373 73 6 1 6 0 3 242 52 65 226 13 13 57 2 1 12 1 0 7 6 10 96 5 6 156 2 0 33 chain 64420 chr21 46709983 + 45678339 45679581 Tigger1 2417 + 1467 2377 25323 140 0 6 11 1 2 193 7 5 80 6 0 69 15 16 168 0 2 49 16 0 7 319 0 16 1 0 46 0 2 98 chain 8249 chr21 46709983 + 45685125 45685318 L1MB3 1562 + 1321 1480 74290 30 1 0 44 0 2 10 58 26 6 2 0 29 1 0 12 chain 22157 chr21 46709983 + 45719435 45719804 THE1D 372 + 0 372 53628 52 42 27 60 0 1 26 32 49 157 chain 146459 chr21 46709983 + 45784481 45786126 SVA_D 2077 + 55 2056 12576 539 0 40 91 0 3 33 10 7 133 2 0 17 0 263 152 0 1 51 0 53 279 0 1 338 chain 181821 chr21 46709983 + 45807051 45809190 L1PA7 6471 + 4321 6461 10507 34 0 1 318 0 4 348 19 1 68 0 6 308 0 1 9 0 2 193 0 3 81 1 3 760 chain 20937 chr21 46709983 + 45858720 45859056 THE1B 368 + 0 338 55214 168 74 76 94 chain 48825 chr21 46709983 + 46075204 46075815 L1PA10 4194 + 3546 4161 30003 68 0 1 387 0 11 62 8 4 36 4 1 34 1 0 11 chain 61290 chr21 46709983 + 46107239 46108004 MER4E1 777 + 0 770 26034 24 0 1 71 0 1 36 1 2 328 0 1 75 6 7 224 chain 22333 chr21 46709983 + 46166436 46166758 L1M1 2793 + 2374 2695 53357 41 1 3 16 4 0 144 5 9 42 1 0 44 1 0 12 1 0 10 chain 189759 chr21 46709983 + 46174360 46176911 L1PA13 3608 + 914 3488 10133 131 10 12 241 0 2 227 14 15 483 0 4 5 2 1 216 0 1 315 0 4 40 0 1 152 14 35 5 1 0 178 9 12 106 12 9 23 1 0 28 1 0 63 0 4 46 2 1 5 1 0 24 1 0 33 9 8 18 8 7 22 1 0 5 2 0 48 2 0 4 2 0 19 1 0 21 chain 85922 chr21 46709983 + 46223504 46224493 LTR13 1007 + 0 1007 20461 108 1 7 185 5 4 226 0 4 165 0 4 205 0 5 94 chain 5661 chr21 46709983 + 46225020 46225088 LTR13 1007 + 5 73 82506 68 chain 61173 chr21 46709983 + 46225090 46225836 LTR13 1007 + 73 815 26066 291 5 0 17 4 5 242 2 1 70 0 1 115 chain 14101 chr21 46709983 + 46225836 46226027 LTR13 1007 + 816 1005 63455 159 7 5 25 chain 3071 chr21 46709983 + 46263832 46263866 L1M3 994 + 334 368 99077 34 chain 3599 chr21 46709983 + 46309478 46309524 MSTC 436 + 385 436 94426 22 0 5 24 chain 393873 chr21 46709983 + 46585795 46591236 L1PB1 5432 + 31 5295 5252 375 3 4 490 8 9 338 0 4 158 14 0 13 0 1 86 0 5 8 0 71 21 0 1 241 300 0 166 0 3 164 0 1 57 1 0 11 1 2 238 8 0 432 10 14 251 0 2 112 0 22 398 1 10 16 0 3 234 6 1 164 0 1 84 0 1 184 0 8 72 1 6 14 0 4 19 1 0 78 0 2 24 0 10 141 2 10 124 4 1 102 18 17 39 6 5 14 0 1 6 12 10 12 1 0 11 6 2 8 2 0 53 3 2 15 2 1 37 6 5 15 chain 116391 chr21 46709983 + 46591619 46593186 THE1B-int 1605 + 0 1605 16158 13 1 0 100 0 1 156 0 3 155 3 28 204 27 30 72 42 44 711 1 6 82 chain 8468 chr21 46709983 + 46628150 46628378 MLT1B 390 + 150 366 73759 24 112 100 92 chain 28567 chr21 46709983 + 46697250 46697554 AluYb8 318 + 4 308 44003 304 chain 312918 chr22 50818468 + 10584723 10588271 L1PA5 6144 + 2571 6138 6553 87 0 1 17 0 1 459 0 5 17 1 0 526 0 2 2005 0 11 436 chain 3246 chr22 50818468 + 10592384 10592450 L1MCa 1829 + 1589 1654 97509 23 18 17 25 chain 12713 chr22 50818468 + 10595477 10595813 L1PB1 5432 + 5118 5422 65598 17 1 0 7 3 2 12 24 22 42 2 1 15 1 0 43 5 4 13 3 0 6 16 6 18 27 25 6 7 0 13 1 0 21 1 0 13 1 0 18 chain 188578 chr22 50818468 + 10616579 10618829 L1P1 4361 + 522 2753 10187 52 1 0 118 7 0 64 3 4 277 0 2 81 18 4 154 1 0 1407 4 0 11 1 6 51 chain 3007 chr22 50818468 + 10735117 10735248 Charlie10b 242 - 77 207 99780 28 80 79 23 chain 27003 chr22 50818468 + 10866420 10866908 MER61F 604 + 0 534 46270 21 44 43 22 17 39 183 3 4 33 42 66 123 chain 13339 chr22 50818468 + 10965395 10965602 L1PA16 3655 + 3385 3591 64567 30 5 6 142 16 14 14 chain 32318 chr22 50818468 + 11040334 11040764 L1PA8 5853 + 5411 5834 40104 153 1 0 45 2 0 69 2 1 9 1 0 50 8 7 15 1 0 74 chain 3928 chr22 50818468 + 11042605 11042653 MLT1D 503 + 0 50 91927 20 0 2 28 chain 3706 chr22 50818468 + 11042803 11042850 MLT1D 503 + 0 49 93571 20 0 2 27 chain 3064 chr22 50818468 + 11042957 11042996 MLT1D 503 + 9 50 99152 11 0 2 28 chain 3073 chr22 50818468 + 11043103 11043142 MLT1D 503 + 9 50 99054 11 0 2 28 chain 3073 chr22 50818468 + 11043201 11043240 MLT1D 503 + 9 50 99053 11 0 2 28 chain 3195 chr22 50818468 + 11043348 11043387 MLT1D 503 + 9 50 97938 15 0 2 24 chain 3596 chr22 50818468 + 11063251 11063305 MSTB-int 1649 + 1589 1636 94468 7 7 0 40 chain 18120 chr22 50818468 + 11118987 11119191 L1PA2 6032 + 5821 6032 58544 63 0 7 141 chain 299336 chr22 50818468 + 11130957 11136627 L1P2 5180 + 2 3871 6851 148 1 0 24 14 11 9 1 0 53 1 0 158 1 0 102 1 0 8 1 0 39 0 1 66 0 1 32 1 0 3 0 51 75 0 15 139 0 6 502 0 1 99 1954 89 394 1 2 24 10 17 310 0 1 1121 1 0 220 15 6 142 chain 272281 chr22 50818468 + 11152825 11155842 L1PA3long 6157 + 3051 6157 7650 305 0 1 647 0 89 1291 1 0 773 chain 501226 chr22 50818468 + 11288307 11294241 L1PA4 6152 + 6 5977 3090 435 0 18 48 0 1 735 0 1 288 0 1 685 0 2 62 1 4 5 3 0 116 0 1 355 8 6 396 1 0 65 0 12 265 0 3 305 1 0 814 1 0 479 9 9 55 0 3 802 chain 70165 chr22 50818468 + 11300669 11301514 L1PA3long 6157 + 5352 6155 23962 85 42 0 718 chain 88877 chr22 50818468 + 11313797 11315257 L1PA7 6471 + 5308 6455 19877 313 0 3 381 4 5 19 20 1 96 0 18 62 322 5 143 0 1 100 chain 76230 chr22 50818468 + 11323907 11324867 LTR5_Hs 974 + 0 974 22506 13 0 4 442 0 4 409 0 3 21 4 8 7 1 0 63 chain 364104 chr22 50818468 + 11341433 11345764 L1P1 4361 + 1 4341 5749 124 14 0 11 1 15 318 0 4 254 1 2 972 0 1 110 0 1 212 0 2 1253 0 1 228 9 10 414 1 2 213 4 3 154 1 0 23 2 1 12 chain 16623 chr22 50818468 + 11355951 11356144 L1PA3long 6157 + 5958 6150 60246 182 1 0 10 chain 125191 chr22 50818468 + 11467625 11469132 L1PA5 6144 + 4250 5768 14669 618 0 4 135 0 1 163 7 13 111 0 8 429 8 0 36 chain 2566 chr22 50818468 + 11491788 11491819 Charlie1a 1436 + 263 294 103259 31 chain 74527 chr22 50818468 + 11549669 11550626 LTR5_Hs 974 + 6 974 22953 283 0 1 40 0 1 136 0 1 184 5 4 61 0 4 98 8 15 27 12 10 103 chain 86388 chr22 50818468 + 11608467 11609495 LTR5A 1029 + 0 1029 20342 78 0 2 68 2 1 880 chain 64607 chr22 50818468 + 11695942 11696804 L1PA7 6471 + 5369 6234 25290 19 6 0 8 1 7 194 0 6 18 5 0 45 3 4 461 0 1 102 chain 24099 chr22 50818468 + 11787877 11788161 LTR14A 344 + 0 344 50648 42 0 60 242 chain 133127 chr22 50818468 + 11788256 11789938 HERVK14-int 1672 + 1 1664 13733 28 1 0 12 1 0 45 1 0 174 1 0 44 2 1 28 2 0 235 1 0 219 0 1 28 4 3 163 1 0 79 3 1 9 3 0 35 1 0 202 0 1 18 0 1 88 1 0 63 1 0 31 2 0 9 1 0 140 1 0 5 chain 38432 chr22 50818468 + 11789939 11790386 MER9a2 513 + 0 513 35768 227 1 67 219 chain 149496 chr22 50818468 + 11791704 11793739 HERVK9-int 4720 + 37 3671 12387 12 8 5 4 1 0 66 1 0 8 1 0 26 6 5 509 23 0 303 7 8 513 0 924 225 80 721 231 0 63 11 chain 418972 chr22 50818468 + 11800955 11806116 L1PA7 6471 + 1130 6465 4894 120 8 48 254 0 1 5 3 0 477 1 0 206 0 4 240 1 0 81 1 11 62 1 2 251 0 4 649 1 5 122 0 70 192 0 2 29 0 30 14 1 0 146 0 2 130 0 1 465 0 1 163 8 9 53 0 1 525 1 4 108 1 5 681 5 6 156 chain 17379 chr22 50818468 + 11935342 11935801 MSTA-int 1630 + 23 1611 59381 83 3 0 6 1 0 6 23 27 68 145 1275 23 11 10 90 chain 527283 chr22 50818468 + 11959381 11965522 L1PA2 6032 + 0 6025 1944 153 16 15 54 4 0 30 5 4 513 137 9 318 0 3 338 0 2 827 0 3 294 1 2 482 1 2 115 0 1 403 0 1 673 0 1 936 0 5 841 chain 15676 chr22 50818468 + 11969711 11970063 MER57-int 2662 + 2332 2647 61428 67 5 0 25 18 12 68 36 21 12 0 1 5 19 16 16 29 23 27 3 0 22 chain 36245 chr22 50818468 + 12038850 12039299 L1PA5 6144 + 5688 6138 37242 122 0 1 179 18 18 130 chain 167373 chr22 50818468 + 12042169 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58621 211 chain 6126 chr22 50818468 + 20946644 20946714 U3 216 + 0 70 80628 70 chain 26645 chr22 50818468 + 21050496 21050801 AluYk4 311 + 0 305 46763 305 chain 4199 chr22 50818468 + 21062072 21062182 L1MB8 1703 + 1474 1586 90124 36 45 47 29 chain 13630 chr22 50818468 + 21064032 21064341 LTR23 429 + 73 287 64115 18 15 0 7 0 16 39 0 3 83 99 0 48 chain 80594 chr22 50818468 + 21071692 21072588 MER11D 897 + 0 897 21514 777 0 1 119 chain 71488 chr22 50818468 + 21093339 21094322 LTR5B 1012 + 0 1003 23656 128 1 14 132 0 7 59 1 0 25 10 9 115 1 0 80 0 2 12 33 34 386 chain 23749 chr22 50818468 + 21184565 21184839 L1PA2 6032 + 5755 6030 51196 122 0 4 136 3 0 13 chain 78038 chr22 50818468 + 21205501 21206463 LTR5_Hs 974 + 0 974 22091 459 0 4 72 1 7 117 0 1 116 7 7 21 0 1 169 chain 25089 chr22 50818468 + 21304509 21304858 L1PB 1623 + 649 996 49132 46 1 0 161 24 23 117 chain 20026 chr22 50818468 + 21389190 21389428 7SK 245 + 0 238 56351 238 chain 24675 chr22 50818468 + 21432403 21432696 AluSp 311 + 10 302 49767 27 1 0 265 chain 24852 chr22 50818468 + 21601694 21601985 AluY 311 + 9 300 49514 6 4 0 253 0 4 28 chain 25191 chr22 50818468 + 21658779 21659080 AluSg 306 + 0 297 48962 44 3 0 63 1 0 190 chain 4601 chr22 50818468 + 21668661 21668714 MER49 923 + 185 238 87789 53 chain 22808 chr22 50818468 + 21722142 21722422 AluSx4 309 + 6 287 52650 124 0 1 156 chain 6569 chr22 50818468 + 21792439 21792521 5S 121 + 6 89 79081 56 1 2 25 chain 9195 chr22 50818468 + 21792927 21793053 Charlie1a 1436 + 1079 1209 72131 22 2 3 21 0 2 55 0 1 26 chain 9965 chr22 50818468 + 21811173 21811402 L1MB1 2102 + 1693 1922 70496 46 1 0 7 50 54 6 2 0 49 5 6 14 1 0 37 1 0 10 chain 120731 chr22 50818468 + 21847027 21848451 SVA_B 1603 + 44 1603 15394 27 1 6 127 0 3 314 0 40 255 0 40 15 0 42 64 1 0 24 0 5 138 1 3 16 4 6 299 3 0 135 chain 28736 chr22 50818468 + 21878236 21878543 AluYb8 318 + 0 305 43733 123 2 0 182 chain 51000 chr22 50818468 + 21908417 21909824 MER4E1 777 + 0 777 29212 23 0 2 88 2 1 12 0 1 146 712 75 85 0 1 103 11 14 105 0 1 120 chain 3075 chr22 50818468 + 21993326 21993359 LTR54B 464 + 416 449 99033 33 chain 4580 chr22 50818468 + 22106189 22106246 L1PB1 5432 + 4996 5055 87909 18 0 2 39 chain 149873 chr22 50818468 + 22160109 22161754 L1PA3long 6157 + 4514 6157 12357 531 1 0 213 1 0 899 chain 536780 chr22 50818468 + 22187854 22193960 L1PA5 6144 + 3 6135 1521 673 0 3 545 2 1 139 0 1 733 0 3 278 5 9 196 0 3 92 1 4 819 0 3 515 2 0 1277 0 4 720 0 5 109 chain 4577 chr22 50818468 + 22200166 22200242 MER75A 77 + 0 76 87928 20 11 12 27 1 0 17 chain 24580 chr22 50818468 + 22209137 22209435 AluYk4 311 + 0 306 49884 46 1 7 221 0 2 30 chain 23204 chr22 50818468 + 22212059 22212326 L1PA5 6144 + 5877 6144 52075 267 chain 43792 chr22 50818468 + 22235154 22235747 LTR71B 605 + 16 605 32264 96 5 1 124 0 3 116 26 12 20 0 7 100 0 4 106 chain 33409 chr22 50818468 + 22260228 22260671 L1PA7 6471 + 6025 6467 39165 282 20 19 141 chain 66165 chr22 50818468 + 22271620 22272365 L1PA5 6144 + 5399 6144 24917 745 chain 387470 chr22 50818468 + 22331717 22336920 L1PA8 5853 + 904 5850 5362 212 5 6 418 0 1 485 1 0 246 1 5 30 272 8 29 0 1 104 0 1 275 0 1 156 1 0 82 0 5 28 0 1 100 0 1 763 13 17 256 0 1 497 0 1 196 1 2 7 0 1 169 2 0 314 2 1 240 1 0 44 2 0 64 8 7 14 4 0 46 7 6 15 2 1 64 2 0 25 chain 22304 chr22 50818468 + 22333122 22333383 L1PA8 5853 + 3934 4195 53400 261 chain 20475 chr22 50818468 + 22417415 22417678 L1PBa1 4058 + 1133 1401 55806 54 0 1 92 0 2 57 10 12 50 chain 109251 chr22 50818468 + 22441381 22442609 SVA_C 1631 + 258 1608 17151 539 0 82 32 1 0 44 1 0 9 1 0 33 0 40 196 0 3 372 chain 57091 chr22 50818468 + 22443864 22444545 L1PA7 6471 + 5774 6457 27237 531 13 15 137 chain 39928 chr22 50818468 + 22452723 22453271 LTR10B1 532 + 8 532 34718 165 12 3 14 13 0 41 5 3 298 chain 89300 chr22 50818468 + 22466683 22468115 L1PB1 5432 + 3937 5246 19800 266 16 16 271 140 8 12 0 1 33 0 1 5 1 0 31 3 1 39 2 0 9 1 5 141 2 1 20 6 14 203 0 2 83 17 20 14 1 0 14 1 0 9 7 3 8 2 0 11 0 2 28 1 0 5 5 9 13 2 1 10 chain 77154 chr22 50818468 + 22468447 22469481 MER11C 1089 + 0 1074 22270 264 8 11 44 10 27 49 0 1 137 9 9 44 12 13 171 5 13 106 0 1 106 0 10 50 5 4 14 chain 8794 chr22 50818468 + 22479891 22480005 MER44D 709 + 0 115 73001 11 1 2 102 chain 128690 chr22 50818468 + 22794421 22796348 HERVL-int 5654 + 2189 3808 14195 28 1 2 433 312 0 88 2 3 596 1 2 208 5 6 253 chain 73969 chr22 50818468 + 22876698 22877506 L1PA3long 6157 + 5348 6156 23101 808 chain 4795 chr22 50818468 + 22940140 22940207 L1MB5 1630 + 1553 1618 86724 48 1 0 13 1 0 4 chain 369849 chr22 50818468 + 22968668 22973148 L1PA6 6164 + 1649 6159 5662 11 0 1 66 0 1 39 0 2 548 0 1 5 13 5 110 0 1 352 2 1 6 0 2 348 0 5 30 1 2 4 0 1 50 0 4 62 0 1 57 0 1 426 5 6 319 0 1 100 0 4 138 1 9 387 1 4 110 0 1 48 4 3 404 0 1 68 0 2 188 5 0 172 1 9 152 15 9 81 1 2 150 chain 103483 chr22 50818468 + 22979807 22981443 HUERS-P3b-int 2065 + 18 1601 17885 76 4 0 59 20 23 9 1 0 114 94 15 110 0 1 41 0 3 218 4 0 70 21 20 48 6 5 18 1 0 140 5 9 87 3 2 4 0 1 129 0 1 70 6 49 131 1 0 44 44 31 7 4 0 21 0 1 26 chain 7885 chr22 50818468 + 22991711 22991798 L1PA6 6164 + 5823 5910 75165 87 chain 19809 chr22 50818468 + 22991798 22992031 L1PA6 6164 + 5914 6147 56663 233 chain 59271 chr22 50818468 + 23006156 23006832 L1PA5 6144 + 5467 6144 26578 344 0 1 332 chain 45271 chr22 50818468 + 23009072 23009704 PABL_A 660 + 0 635 31436 407 24 28 73 0 2 14 12 8 46 1 0 4 5 7 46 chain 364264 chr22 50818468 + 23048050 23052731 L1PB1 5432 + 12 5420 5743 7 1 0 72 4 5 294 0 1 10 1 0 48 0 3 22 8 724 29 0 2 173 2 0 877 0 1 94 0 4 22 0 1 96 4 5 12 1 5 278 0 1 44 1 0 60 0 1 27 0 4 483 0 1 306 6 9 92 0 4 341 0 11 193 6 7 7 1 0 226 7 9 106 0 1 61 8 7 281 0 4 20 17 15 20 2 0 9 1 0 10 19 13 110 1 0 14 2 0 3 11 0 30 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 25336 chr22 50818468 + 23176244 23176611 LTR14A 344 + 2 344 48736 110 38 7 143 4 10 72 chain 4871 chr22 50818468 + 23226607 23226721 MER58A 224 + 39 154 86319 42 26 27 17 10 10 19 chain 5938 chr22 50818468 + 23367055 23367125 MER5A 189 + 6 76 81325 70 chain 50714 chr22 50818468 + 23367192 23367812 LTR6A 649 + 0 624 29309 406 0 5 21 1 0 192 chain 19910 chr22 50818468 + 23378265 23378541 LTR61 567 + 268 567 56509 72 0 17 36 5 8 11 6 10 20 1 0 125 chain 28990 chr22 50818468 + 23467493 23467870 L1PB 1623 + 649 1024 43341 138 1 0 68 4 3 166 chain 23224 chr22 50818468 + 23495418 23495689 L1PA3long 6157 + 5887 6157 52046 26 2 1 243 chain 79475 chr22 50818468 + 23536061 23537013 LTR5_Hs 974 + 0 957 21748 285 0 1 153 0 3 334 7 7 42 0 1 71 0 1 13 1 0 46 chain 8017 chr22 50818468 + 23537027 23537189 HERVK-int 6823 + 0 154 74848 5 1 0 11 5 3 17 11 10 16 1 0 13 1 0 25 2 1 19 1 0 34 chain 5266 chr22 50818468 + 23537189 23537250 LTR5B 1012 + 951 1012 84355 61 chain 70241 chr22 50818468 + 23546900 23547896 MER11A 1151 + 0 1151 23942 42 13 113 44 2 0 95 0 11 24 6 0 59 0 1 54 0 3 87 0 1 4 1 2 9 1 0 133 0 3 5 2 1 36 0 1 15 0 4 56 1 0 12 45 79 47 0 1 127 0 7 9 7 6 60 chain 4667 chr22 50818468 + 23584655 23584735 MLT2D 439 + 1 83 87450 30 12 13 26 0 1 12 chain 3847 chr22 50818468 + 23617483 23617528 LTR71B 605 + 560 605 92520 45 chain 548921 chr22 50818468 + 23662983 23669137 L1PA4 6152 + 6 6152 816 66 1 2 54 14 0 159 0 1 399 0 3 40 0 1 691 0 5 774 0 2 599 0 1 380 3 0 187 3 1 1650 0 1 885 2 1 238 3 0 6 chain 4095 chr22 50818468 + 23722416 23722489 MER4A 717 + 0 62 90811 29 15 4 29 chain 3461 chr22 50818468 + 23815625 23815667 L1MD2 1676 + 1237 1279 95537 42 chain 5211 chr22 50818468 + 23840740 23840872 L1MB3 1562 + 1330 1500 84625 21 1 0 22 49 88 39 chain 174709 chr22 50818468 + 23853842 23856296 SVA_E 1901 + 0 1892 10858 153 2 0 664 1 0 19 1 0 91 4 0 38 48 0 62 500 0 726 6 0 139 chain 5813 chr22 50818468 + 23854928 23854994 SVA_E 1901 + 1156 1222 64348 66 chain 19045 chr22 50818468 + 23854994 23855352 SVA_E 1901 + 1095 1382 57502 83 0 1 4 16 7 10 83 20 8 0 1 136 4 3 14 chain 1040 chr22 50818468 + 23855107 23855146 SVA_E 1901 + 935 974 63853 39 chain 3599 chr22 50818468 + 23855146 23855190 SVA_E 1901 + 1227 1270 80593 34 1 0 9 chain 3476 chr22 50818468 + 23855386 23855425 SVA_E 1901 + 817 855 70629 26 1 0 12 chain 44540 chr22 50818468 + 23900207 23900715 MER9a2 513 + 0 513 31810 327 0 5 181 chain 80062 chr22 50818468 + 23907083 23908049 LTR5_Hs 974 + 0 974 21614 285 0 1 281 0 1 91 0 1 159 8 15 31 8 6 103 chain 31713 chr22 50818468 + 23911522 23911909 MER48 407 + 0 407 40569 137 3 23 247 chain 40475 chr22 50818468 + 23924978 23925501 LTR10G 522 + 0 522 34329 116 1 0 227 11 10 95 0 2 58 1 0 14 chain 75628 chr22 50818468 + 23929916 23930860 LTR13 1007 + 7 956 22681 66 2 0 48 0 2 140 0 2 116 4 5 274 0 1 21 17 17 116 0 1 140 chain 133366 chr22 50818468 + 23936431 23937909 SVA_D 2077 + 13 2074 13704 12 0 12 801 0 575 648 4 0 13 chain 77317 chr22 50818468 + 23955554 23956603 MER11C 1089 + 0 1063 22246 247 4 13 57 5 9 60 1 0 146 36 35 11 1 0 112 1 5 4 1 0 38 0 1 127 0 1 54 1 0 143 chain 11264 chr22 50818468 + 24010695 24010884 MER30 238 + 46 236 68144 60 39 37 47 0 3 43 chain 2728 chr22 50818468 + 24192290 24192340 LTR56 451 + 13 63 102131 14 7 6 7 0 1 22 chain 119953 chr22 50818468 + 24194052 24195375 L1PA3long 6157 + 4815 6147 15545 17 0 1 48 0 4 132 1 0 142 0 5 983 chain 5341 chr22 50818468 + 24197263 24197328 LTR8 732 + 501 566 83996 65 chain 39956 chr22 50818468 + 24204014 24204545 MER41A 554 + 0 546 34693 349 13 14 93 1 14 49 0 1 26 chain 10605 chr22 50818468 + 24218003 24218175 MER49 923 + 596 759 69222 31 28 19 113 chain 14482 chr22 50818468 + 24367341 24367543 MER30 238 + 0 231 62915 16 0 18 77 4 18 68 3 0 34 chain 222246 chr22 50818468 + 24372101 24374603 L1PA4 6152 + 3457 5970 8975 308 9 17 884 0 1 634 4 8 589 3 1 71 chain 17009 chr22 50818468 + 24489440 24489685 L1MA2 4263 + 3880 4110 59795 76 16 9 93 7 0 47 1 0 5 chain 22220 chr22 50818468 + 24580067 24580336 AluSp 311 + 11 288 53523 42 0 3 32 0 6 83 1 0 111 chain 50663 chr22 50818468 + 24730935 24731895 PABL_A 660 + 0 660 29321 51 0 4 369 0 3 2 311 0 73 0 1 92 0 4 38 2 1 22 chain 48462 chr22 50818468 + 24740569 24741608 L1PB1 5432 + 2623 3331 30131 110 6 0 36 7 9 41 12 14 114 0 1 51 8 11 12 14 12 245 333 2 50 chain 23896 chr22 50818468 + 24760516 24760803 AluSp 311 + 11 305 50949 71 0 9 20 1 0 21 1 0 173 chain 3968 chr22 50818468 + 24795675 24795720 L1MB5 1630 + 1270 1315 91650 45 chain 6587 chr22 50818468 + 24811094 24811189 MER20 218 + 30 131 79023 55 8 14 32 chain 4393 chr22 50818468 + 24875248 24875519 MER58B 340 + 59 329 88926 37 195 194 39 chain 24508 chr22 50818468 + 24978110 24978454 THE1A 353 + 0 341 50006 13 2 0 34 0 1 48 1 0 16 0 1 6 16 15 64 1 0 143 chain 44677 chr22 50818468 + 25215092 25215603 MER9a3 513 + 0 513 31753 18 0 1 459 0 1 34 chain 3692 chr22 50818468 + 25225176 25225284 MIRb 242 + 19 126 93666 33 48 47 27 chain 28636 chr22 50818468 + 25233863 25234232 L1PA8 5853 + 5485 5847 43892 77 1 0 48 2 0 70 1 0 8 2 1 51 2 1 19 1 0 87 chain 27747 chr22 50818468 + 25415048 25415392 LTR14A 344 + 0 344 45254 233 4 5 69 1 0 37 chain 28124 chr22 50818468 + 25460809 25461175 L1PA8 5853 + 5485 5845 44675 36 0 2 41 1 0 44 2 0 72 1 0 8 1 0 16 1 0 36 3 2 18 2 1 84 chain 90436 chr22 50818468 + 25625125 25626133 LTR13 1007 + 0 1007 19602 305 1 0 702 chain 40055 chr22 50818468 + 25759185 25759677 L1PA7 6471 + 5963 6468 34620 143 0 9 97 0 2 27 4 6 221 chain 3449 chr22 50818468 + 25786456 25786503 L1MD 993 + 789 836 95652 47 chain 3931 chr22 50818468 + 25834494 25834550 MER81 114 + 1 58 91897 13 1 2 42 chain 3216 chr22 50818468 + 25879110 25879149 MER58A 224 + 45 83 97749 4 1 0 34 chain 80214 chr22 50818468 + 25926806 25927864 MER11C 1089 + 0 1073 21585 246 0 9 62 0 4 65 1 0 146 47 46 112 1 5 4 1 0 38 0 1 127 0 1 54 1 0 62 1 0 82 0 1 8 chain 3100 chr22 50818468 + 25981797 25981859 MLT1F 544 + 180 243 98790 25 14 15 23 chain 4108 chr22 50818468 + 26264345 26264393 MIRc 230 + 66 114 90712 48 chain 3403 chr22 50818468 + 26402158 26402201 MLT1K 546 + 491 534 96036 43 chain 4186 chr22 50818468 + 26433101 26433148 MIRb 242 + 93 140 90224 47 chain 109813 chr22 50818468 + 26454524 26455741 L1PA4 6152 + 4933 6151 17095 1169 0 1 9 5 0 20 0 5 14 chain 32454 chr22 50818468 + 26497474 26498671 L1PB1 5432 + 4868 5421 39985 7 0 2 114 311 8 47 0 2 5 2 0 50 1 2 9 1 0 24 1 0 6 1 0 13 17 11 52 2 1 16 1 0 43 1 0 16 1 0 6 16 6 19 340 22 21 1 0 21 1 0 13 1 0 17 chain 6484 chr22 50818468 + 26590620 26590723 MER20 218 + 38 137 79394 46 14 10 43 chain 11541 chr22 50818468 + 26605951 26606129 MER30 238 + 40 238 67681 68 13 30 58 4 7 35 chain 82829 chr22 50818468 + 26613391 26614428 MER11C 1089 + 0 1054 21061 246 0 9 62 0 4 40 0 1 24 1 0 304 1 5 4 1 0 38 0 1 127 0 1 54 1 0 134 chain 23830 chr22 50818468 + 26653442 26653768 MER87B 500 + 0 321 51053 115 1 0 18 1 0 41 4 7 123 6 0 17 chain 6044 chr22 50818468 + 26755246 26755355 L1PB1 5432 + 5319 5420 80910 8 2 0 5 1 0 14 2 0 24 4 3 18 1 0 13 1 0 16 chain 38480 chr22 50818468 + 26766770 26767323 LTR12_ 688 + 0 688 35730 166 1 2 135 45 46 110 0 133 96 chain 26408 chr22 50818468 + 26770152 26770441 L1PA4 6152 + 5862 6151 47109 289 chain 4895 chr22 50818468 + 26786535 26786611 MADE1 96 + 4 96 86178 20 5 21 51 chain 59205 chr22 50818468 + 26869690 26870355 L1PA4 6152 + 5494 6151 26605 385 8 0 272 chain 21487 chr22 50818468 + 26889140 26889395 AluSc 308 + 16 271 54526 255 chain 5812 chr22 50818468 + 26894514 26894585 MER74A 558 + 427 498 81867 71 chain 6836 chr22 50818468 + 26909829 26909938 L1MB5 1630 + 1355 1462 78178 33 15 13 61 chain 4677 chr22 50818468 + 26970950 26971005 MLT1J 494 + 96 151 87395 55 chain 6400 chr22 50818468 + 27001338 27001434 MER30 238 + 139 238 79675 22 2 7 5 0 1 15 3 0 49 chain 13291 chr22 50818468 + 27049572 27049735 Tigger3d 321 + 28 191 64641 163 chain 6402 chr22 50818468 + 27112644 27112811 MER58A 224 + 47 212 79667 72 71 70 19 1 0 4 chain 191744 chr22 50818468 + 27233454 27235793 L1PA7 6471 + 4137 6469 10036 83 29 8 78 0 5 477 6 0 3 5 0 453 1 0 146 1 7 188 0 11 25 0 3 79 0 1 352 3 5 398 2 0 10 chain 11329 chr22 50818468 + 27346633 27346849 Tigger3a 397 + 139 335 68038 9 0 10 91 16 12 48 34 8 18 chain 213280 chr22 50818468 + 27373073 27375745 L1P2 5180 + 17 2715 9227 111 0 1 16 6 5 23 32 31 43 1 0 267 0 1 48 1 0 224 1 0 6 1 0 31 9 13 267 1 2 49 0 1 64 0 1 23 1 0 4 0 1 199 4 13 129 0 3 289 0 10 81 1 2 337 0 1 6 1 0 396 chain 72718 chr22 50818468 + 27375745 27376586 L1PA6 6164 + 5315 6160 23377 730 0 4 111 chain 3488 chr22 50818468 + 27405529 27405573 MIR 256 + 166 210 95328 44 chain 31337 chr22 50818468 + 27610346 27610689 L1PA3long 6157 + 5799 6142 40856 343 chain 10068 chr22 50818468 + 27742306 27742411 LTR7 482 + 377 482 70262 105 chain 169634 chr22 50818468 + 27742432 27744537 HERVH-int 3825 + 0 2123 11119 27 2 0 461 2 0 12 39 31 39 1 0 9 2 1 24 30 0 15 0 37 42 2 1 57 0 2 5 1 2 13 0 3 344 0 4 94 15 0 379 0 4 79 4 31 53 1 0 306 0 1 47 chain 3011 chr22 50818468 + 27742936 27742975 HERVH-int 3825 + 438 475 92412 31 2 0 6 chain 41611 chr22 50818468 + 27744682 27745128 LTR7 482 + 0 446 33616 446 chain 3475 chr22 50818468 + 27764903 27764940 MER58A 224 + 45 82 95416 37 chain 3452 chr22 50818468 + 27793350 27793389 U3 216 + 0 39 95629 39 chain 3334 chr22 50818468 + 27833034 27833073 MADE1 96 + 0 40 96732 5 0 1 34 chain 45054 chr22 50818468 + 27924165 27924817 HSMAR1 1287 + 0 1281 31550 75 6 0 47 8 3 34 0 5 202 26 661 49 0 1 18 1 0 186 chain 334188 chr22 50818468 + 28035821 28039677 L1PA5 6144 + 2314 6141 6153 82 1 0 3 1 0 119 3 1 196 40 13 578 2 1 152 0 3 2679 chain 257855 chr22 50818468 + 28039677 28042720 L1PA6 6164 + 3090 6147 8012 124 1 4 109 2 1 576 0 2 462 0 4 943 1 5 506 1 0 49 0 1 36 1 0 174 4 7 54 chain 49130 chr22 50818468 + 28071210 28071746 L1PA2 6032 + 5497 6032 29894 383 1 0 152 chain 542833 chr22 50818468 + 28083531 28089674 L1PA3long 6157 + 4 6157 1148 574 0 1 124 1 0 4 6 14 1731 1 0 805 0 3 2897 chain 34216 chr22 50818468 + 28089741 28090125 L1PA4 6152 + 5768 6152 38554 384 chain 28192 chr22 50818468 + 28099187 28099550 LTR18A 364 + 0 364 44577 11 1 0 249 1 3 101 chain 127873 chr22 50818468 + 28133248 28134796 L1P1 4361 + 4 1578 14300 111 6 20 748 0 1 341 1 2 51 0 10 290 chain 175551 chr22 50818468 + 28156785 28159373 L1MA2 4263 + 1245 3880 10799 30 5 12 79 0 1 40 0 1 4 1 4 20 7 0 7 0 6 9 0 3 21 0 1 110 7 0 52 11 10 88 31 33 54 0 4 39 20 23 51 0 4 12 0 8 118 9 8 62 1 16 51 0 3 16 6 5 66 2 1 222 7 4 13 6 10 76 1 0 260 0 1 83 11 7 52 7 8 106 1 2 119 1 0 279 0 1 6 1 0 18 5 1 67 15 30 114 13 10 47 6 4 23 chain 537997 chr22 50818468 + 28163683 28169817 L1PA4 6152 + 11 6138 1452 116 0 14 868 0 1 135 35 0 1290 0 4 109 0 1 235 0 2 422 0 1 307 1 0 166 0 2 196 0 1 1810 0 2 132 0 1 168 2 0 6 0 2 136 chain 517479 chr22 50818468 + 28191323 28197437 L1PA4 6152 + 20 6152 2400 1144 35 26 19 0 6 225 0 1 9 5 6 4 1 0 219 0 1 77 0 1 83 0 4 49 1 0 868 0 1 21 0 4 498 1 0 147 7 5 244 0 4 268 3 0 1043 1 0 438 0 18 558 5 0 141 chain 509908 chr22 50818468 + 28209186 28215283 L1PA5 6144 + 7 6135 2776 86 23 31 10 11 25 393 1 0 63 0 1 75 7 0 6 0 7 465 9 0 33 0 6 235 5 6 4 1 0 154 0 1 63 0 1 78 0 1 86 0 4 473 0 1 196 6 7 237 0 1 21 0 4 645 7 5 244 0 4 268 3 0 1043 1 0 1145 chain 4189 chr22 50818468 + 28239266 28239316 MER3 215 + 53 103 90201 50 chain 227934 chr22 50818468 + 28311878 28314615 L1P2 5180 + 2165 4897 8812 7 2 0 147 6 0 35 1 0 221 1 5 1079 0 1 26 1 0 288 5 6 613 7 6 298 chain 22545 chr22 50818468 + 28324295 28324577 L1P3 4156 + 3863 4139 53049 133 2 0 28 1 0 83 2 0 9 1 0 23 chain 25580 chr22 50818468 + 28362121 28362463 THE1B 368 + 2 356 48349 42 14 29 96 1 0 23 2 0 164 chain 121925 chr22 50818468 + 28362475 28364081 THE1B-int 1605 + 0 1600 15202 430 1 26 56 28 2 99 13 6 11 0 1 164 3 4 194 4 0 233 0 5 108 0 1 4 1 0 38 1 0 175 2 1 12 0 1 29 chain 27145 chr22 50818468 + 28364088 28364442 THE1B 368 + 2 368 46057 42 0 15 110 6 5 18 2 0 176 chain 29114 chr22 50818468 + 28385994 28386299 AluYa8 305 + 0 305 43168 305 chain 40595 chr22 50818468 + 28463308 28463779 L1PA5 6144 + 5529 6001 34228 290 0 1 181 chain 12277 chr22 50818468 + 28463779 28463915 L1PA5 6144 + 6002 6138 66318 136 chain 94899 chr22 50818468 + 28491211 28492263 L1PA4 6152 + 5092 6143 18923 910 1 0 141 chain 341124 chr22 50818468 + 28506885 28512358 L1PA11 4918 + 3 4578 6047 36 8 6 40 4 1 29 1 0 5 0 1 6 2 0 53 1 0 31 8 5 58 0 3 60 4 0 92 0 1 54 0 4 176 0 1 376 0 1 178 0 1 46 0 7 106 326 0 35 2 0 77 0 1 60 7 0 50 0 4 88 312 0 117 1 2 36 0 6 358 3 0 18 0 1 7 6 8 13 0 1 19 0 7 29 4 3 97 3 0 153 1 0 142 10 21 8 0 1 352 0 1 35 0 12 431 1 0 486 303 0 34 3 0 52 15 31 137 0 5 10 5 0 67 1 0 12 2 0 59 8 6 16 1 0 5 0 1 4 1 0 10 26 31 9 1 2 4 1 0 13 2 0 11 chain 28650 chr22 50818468 + 28516440 28516767 L1PA6 6164 + 5835 6162 43870 327 chain 521640 chr22 50818468 + 28528947 28535075 L1PA5 6144 + 0 6142 2200 52 10 13 55 1 15 186 0 3 352 0 3 203 0 1 259 0 1 26 9 0 385 0 1 408 0 1 1216 4 7 183 0 1 4 1 0 633 0 1 284 2 1 334 1 0 643 2 1 22 1 0 517 0 1 226 0 3 70 4 0 24 4 0 7 chain 197292 chr22 50818468 + 28550826 28555826 L1PB1 5432 + 1581 5422 9798 26 1 0 276 0 830 82 0 1 46 1 0 161 6 5 116 0 1 18 1 3 560 15 18 8 4 0 230 6 7 38 3 4 41 0 1 276 2191 217 4 1 0 78 0 1 165 0 8 192 2 3 106 14 11 24 1 0 6 1 0 12 18 12 52 2 1 16 1 0 45 1 0 12 25 14 18 21 23 16 1 0 5 1 0 22 2 1 11 1 0 18 chain 145545 chr22 50818468 + 28552750 28554387 SVA_D 2077 + 0 2076 12653 12 2 0 553 0 1 342 0 85 9 1 0 32 1 4 15 12 365 658 chain 11062 chr22 50818468 + 28585835 28585988 L1PA7 6471 + 6318 6470 68467 133 8 7 12 chain 264707 chr22 50818468 + 28611847 28615130 L1PA6 6164 + 1933 5335 7836 14 1 2 53 0 80 60 0 5 178 0 1 114 0 1 272 7 0 182 0 1 139 18 18 124 8 8 4 0 1 51 1 0 82 11 46 493 0 5 159 1 2 650 0 1 512 1 0 81 3 0 43 1 0 20 chain 13000 chr22 50818468 + 28656753 28656905 L1PA5 6144 + 5974 6132 65115 104 0 6 48 chain 568228 chr22 50818468 + 28663283 28669315 L1HS 6032 + 0 6032 11 6032 chain 4278 chr22 50818468 + 28675981 28676097 L1MB7 1623 + 1311 1420 89633 13 47 41 5 1 0 50 chain 6188 chr22 50818468 + 28735517 28735594 MER47A 366 + 104 181 80398 77 chain 24031 chr22 50818468 + 28739931 28740207 AluSc5 308 + 11 287 50753 276 chain 61723 chr22 50818468 + 28761187 28761950 LTR17 781 + 0 781 25937 121 0 9 35 0 1 138 10 0 23 0 1 40 0 6 18 9 19 362 0 1 7 chain 5000 chr22 50818468 + 28769180 28769583 LTR12_ 688 + 70 392 85659 27 6 22 23 309 212 38 chain 2901 chr22 50818468 + 28776092 28776127 HSMAR2 1300 + 1003 1038 100841 35 chain 23054 chr22 50818468 + 28820598 28820874 AluSp 311 + 11 287 52287 276 chain 35578 chr22 50818468 + 28846713 28847294 LTR10E 629 + 0 629 37671 14 0 1 80 26 79 14 1 4 77 1 0 4 0 1 13 10 8 29 1 0 55 1 0 155 1 0 14 42 39 35 1 0 7 chain 21396 chr22 50818468 + 29005800 29006047 AluSp 311 + 47 295 54636 124 0 1 123 chain 40075 chr22 50818468 + 29101292 29101832 Tigger3b 1229 + 627 1165 34607 298 13 12 159 1 0 69 chain 13382 chr22 50818468 + 29115166 29115421 L1PB1 5432 + 5188 5420 64492 32 2 1 15 1 0 45 1 0 15 3 0 6 16 6 19 8 5 14 2 0 24 1 0 6 1 2 13 1 0 13 1 0 16 chain 6274 chr22 50818468 + 29134013 29134091 U6 107 + 0 78 80083 78 chain 33230 chr22 50818468 + 29159943 29161836 L1PA16 3655 + 136 1386 39320 273 1412 769 31 20 20 157 chain 18737 chr22 50818468 + 29178650 29178942 MER44A 345 + 0 335 57861 18 52 92 76 0 3 146 chain 45580 chr22 50818468 + 29240335 29240916 LTR14B 630 + 0 630 31272 274 7 53 213 11 14 76 chain 3362 chr22 50818468 + 29264598 29264638 MIRc 230 + 67 107 96447 40 chain 21819 chr22 50818468 + 29363378 29363662 AluSc 308 + 11 294 54077 111 0 1 8 1 0 132 5 4 27 chain 126780 chr22 50818468 + 29551800 29553237 SVA_C 1631 + 48 1614 14439 166 0 1 555 1 127 106 0 1 577 0 1 32 chain 23706 chr22 50818468 + 29602674 29602947 AluSp 311 + 0 280 51268 71 0 7 202 chain 5840 chr22 50818468 + 29613549 29613621 L1MB8 1703 + 381 453 81734 72 chain 22373 chr22 50818468 + 29749642 29750017 THE1D 372 + 0 372 53309 56 43 37 40 1 2 31 25 27 179 chain 5986 chr22 50818468 + 29758785 29758858 HY3 101 + 28 101 81139 73 chain 4802 chr22 50818468 + 29761608 29761665 MER1B 344 + 170 227 86688 57 chain 40232 chr22 50818468 + 29762332 29762858 MER1A 529 + 0 528 34496 259 0 1 137 1 4 56 18 16 55 chain 7267 chr22 50818468 + 29846703 29846821 MER20 218 + 33 166 76774 49 13 29 47 1 0 8 chain 23092 chr22 50818468 + 29919961 29920242 AluSc 308 + 28 305 52222 227 1 0 42 3 0 8 chain 27847 chr22 50818468 + 29939780 29940509 LTR7B 505 + 0 494 45111 84 9 40 84 7 5 15 6 29 12 284 0 135 1 3 7 2 0 27 14 13 26 2 0 14 chain 3431 chr22 50818468 + 30043561 30043600 Tigger4a 237 - 190 229 95813 39 chain 6742 chr22 50818468 + 30057497 30057577 L1M4c 1769 + 872 952 78503 80 chain 64503 chr22 50818468 + 30059759 30060469 SVA_C 1631 + 918 1631 25310 85 0 1 337 0 2 288 chain 127921 chr22 50818468 + 30066086 30067525 SVA_C 1631 + 0 1631 14294 16 0 22 549 0 39 226 4 0 46 0 133 310 0 2 288 chain 132883 chr22 50818468 + 30099985 30101586 L1PA8 5853 + 4245 5850 13748 742 1 0 20 0 2 553 1 0 40 10 7 72 1 0 6 2 1 52 2 1 19 1 0 35 0 11 44 chain 9039 chr22 50818468 + 30271471 30271595 L1MB7 1623 + 1048 1177 72473 39 5 0 50 0 10 30 chain 44479 chr22 50818468 + 30353336 30353831 LTR2C 499 + 0 499 31840 172 0 3 167 1 2 155 chain 8293 chr22 50818468 + 30389519 30389703 Tigger7 736 + 67 266 74182 84 64 79 36 chain 5043 chr22 50818468 + 30436596 30436660 MER63D 473 + 38 102 85457 64 chain 9872 chr22 50818468 + 30452523 30452691 LTR45C 530 + 289 449 70681 10 1 0 47 3 0 5 5 8 70 13 6 14 chain 5343 chr22 50818468 + 30558773 30558871 MER53 195 - 29 126 83991 34 2 0 8 2 0 10 6 8 31 0 1 5 chain 11007 chr22 50818468 + 30597352 30597568 LTR12C 1709 + 948 1086 68549 115 78 0 23 chain 5830 chr22 50818468 + 30597583 30597651 LTR12C 1709 + 859 927 81784 68 chain 3016 chr22 50818468 + 30597687 30597720 LTR12C 1709 + 685 718 99687 33 chain 33040 chr22 50818468 + 30726203 30726644 L1PA8 5853 + 5413 5852 39483 15 0 1 137 1 0 42 0 1 69 14 12 4 0 1 45 2 1 19 1 0 92 chain 3046 chr22 50818468 + 30729911 30729947 MLT1C 463 + 368 404 99365 36 chain 3726 chr22 50818468 + 30751654 30751695 MER4E1 777 + 736 777 93434 41 chain 34394 chr22 50818468 + 30776837 30777233 THE1B-int 1605 + 1207 1605 38435 111 0 2 285 chain 12314 chr22 50818468 + 30840082 30840221 L1PA2 6032 + 5892 6031 66271 139 chain 35551 chr22 50818468 + 30918864 30919383 MER1A 529 + 0 529 37686 57 36 40 32 4 6 72 0 1 122 0 1 117 1 0 14 15 18 49 chain 145686 chr22 50818468 + 31010786 31012368 L1PA2 6032 + 4446 6032 12638 736 0 4 846 chain 148807 chr22 50818468 + 31026310 31028150 SVA_D 2077 + 55 1863 12432 103 0 1 49 2 1 59 1 12 623 4 0 14 2 0 26 45 5 90 0 50 147 97 0 25 0 1 39 0 1 46 1 0 5 0 49 462 chain 3488 chr22 50818468 + 31027193 31027238 SVA_D 2077 + 1130 1175 33081 45 chain 7518 chr22 50818468 + 31027475 31027572 SVA_D 2077 + 1362 1460 33081 26 0 1 71 chain 28593 chr22 50818468 + 31047709 31048061 THE1A 353 + 0 353 43968 111 1 0 88 2 3 110 1 2 39 chain 41166 chr22 50818468 + 31181544 31182008 L1PA5 6144 + 5674 6138 33862 464 chain 23293 chr22 50818468 + 31217130 31217411 AluSg7 307 + 11 295 51940 69 0 1 41 3 5 168 chain 3407 chr22 50818468 + 31394351 31394388 LTR12 884 + 824 861 96007 37 chain 25541 chr22 50818468 + 31498313 31501156 Tigger1 2417 + 1473 2281 48423 84 0 6 22 1051 238 136 0 1 80 27 25 24 1359 132 29 1 0 6 1 0 4 0 2 19 chain 7039 chr22 50818468 + 31644721 31644841 Tigger4b 360 + 3 150 77472 32 4 21 25 1 0 34 5 16 19 chain 2512 chr22 50818468 + 31787994 31788079 L1MA3 4352 + 4268 4322 103592 13 9 7 23 29 0 11 chain 5646 chr22 50818468 + 31867584 31867729 MER58A 224 + 50 194 82579 22 63 62 60 chain 31183 chr22 50818468 + 31930832 31931235 MLT2A1 477 + 0 398 40989 168 5 2 12 0 1 20 0 1 181 4 0 13 chain 3276 chr22 50818468 + 32015655 32015695 MLT1E2 623 + 582 623 97221 25 0 1 15 chain 20026 chr22 50818468 + 32037555 32037959 L1PB1 5432 + 5046 5411 56353 57 7 0 11 1 0 24 1 0 4 5 4 12 5 1 9 2 0 52 2 1 15 1 0 44 1 0 15 30 18 14 2 0 4 1 0 15 2 0 24 1 0 14 11 10 10 1 0 7 chain 7690 chr22 50818468 + 32056354 32056496 MER53 195 + 0 122 75650 69 28 6 31 2 4 12 chain 4335 chr22 50818468 + 32127268 32127320 MER41-int 2638 + 115 167 89271 52 chain 66629 chr22 50818468 + 32139194 32140576 HERVIP10FH-int 2884 + 149 1034 24790 64 16 12 31 8 10 129 1 0 4 1 2 187 0 1 11 0 12 15 1 0 35 0 2 14 0 2 40 0 3 50 514 0 261 chain 74336 chr22 50818468 + 32146794 32147842 MER11C 1089 + 0 1063 22996 116 0 2 123 9 18 58 6 10 59 1 0 149 74 71 84 1 5 4 1 0 38 0 1 127 0 1 54 1 0 143 chain 2824 chr22 50818468 + 32192619 32192651 MER5A1 166 + 100 132 101501 32 chain 20547 chr22 50818468 + 32227665 32227963 AluSc 308 + 10 278 55719 76 0 1 125 33 1 44 1 0 6 0 2 13 chain 49300 chr22 50818468 + 32250503 32251118 L1PA8 5853 + 5242 5849 29833 322 2 0 44 2 0 70 2 1 9 1 0 52 3 2 18 1 0 89 chain 65241 chr22 50818468 + 32263417 32264197 L1PA7 6471 + 5678 6469 25119 567 0 1 14 0 3 8 6 13 185 chain 9376 chr22 50818468 + 32289296 32289476 THE1C 375 + 0 218 71759 15 2 0 32 32 39 27 3 4 61 0 32 8 chain 3826 chr22 50818468 + 32292545 32292590 MLT1A1 405 + 292 337 92669 45 chain 3891 chr22 50818468 + 32320688 32320737 L1MC2 1988 + 1940 1988 92207 6 1 0 42 chain 123699 chr22 50818468 + 32346316 32347685 L1PA4 6152 + 4600 5971 14900 44 0 1 142 0 1 1183 chain 29062 chr22 50818468 + 32374556 32374885 L1PA7 6471 + 6140 6470 43241 175 0 1 154 chain 29031 chr22 50818468 + 32396824 32397219 LTR3B 427 + 0 423 43275 57 0 2 49 0 1 52 1 0 14 1 2 116 0 16 14 5 12 21 0 2 65 chain 16111 chr22 50818468 + 32398339 32398610 L1PA8 5853 + 5578 5852 60882 32 3 1 64 28 26 39 2 1 19 9 8 46 1 10 28 chain 4128 chr22 50818468 + 32426949 32426996 MER45A 178 + 131 178 90600 47 chain 22506 chr22 50818468 + 32451436 32451698 L1PA5 6144 + 5877 6135 53112 110 4 0 148 chain 12298 chr22 50818468 + 32473106 32473272 LTR10C 591 + 396 564 66292 104 7 9 55 chain 30192 chr22 50818468 + 32502753 32503187 LTR7Y 441 + 0 441 41859 105 9 0 55 68 84 197 chain 286471 chr22 50818468 + 32503187 32506810 HERVH-int 3825 + 0 3825 7245 211 0 11 158 0 2 150 5 0 25 0 3 10 5 4 6 1 0 24 29 0 12 7 6 9 24 0 19 20 1 5 1 0 42 2 1 57 0 1 7 0 2 12 0 3 344 0 13 91 15 0 71 0 3 85 2 0 293 8 35 72 2 14 213 4 14 716 0 1 4 28 27 293 9 11 39 8 218 260 0 2 225 chain 28968 chr22 50818468 + 32508070 32508503 LTR7Y 441 + 0 441 43379 103 9 0 57 68 84 81 0 1 115 chain 20478 chr22 50818468 + 32554553 32554816 LTR10A 586 + 183 535 55804 14 0 87 177 0 1 51 0 1 21 chain 5793 chr22 50818468 + 32619075 32619143 MER5A1 166 + 25 93 81961 68 chain 6265 chr22 50818468 + 32681179 32681289 MER20 218 + 1 104 80108 19 1 0 8 7 8 43 7 0 25 chain 15994 chr22 50818468 + 32710685 32710904 MSTA 426 + 208 426 61030 30 15 14 174 chain 28070 chr22 50818468 + 32727939 32728276 L1PA11 4918 + 3869 4207 44765 33 1 2 303 chain 30517 chr22 50818468 + 32755851 32756230 L1PA7 6471 + 6090 6469 41546 222 1 2 140 5 4 11 chain 69772 chr22 50818468 + 32757104 32758305 HERVL-int 5654 + 4775 5654 24048 33 10 4 107 0 1 25 317 0 240 2 1 101 4 5 80 1 0 58 0 1 223 chain 32963 chr22 50818468 + 32758305 32758743 MLT2A1 477 + 0 477 39539 33 0 5 104 0 1 25 1 5 151 1 0 14 2 0 45 0 2 20 4 34 38 chain 23240 chr22 50818468 + 32884597 32884896 AluSc5 308 + 0 302 52019 28 2 1 47 1 3 193 0 2 28 chain 14368 chr22 50818468 + 32915068 32915284 L1PA7 6471 + 6256 6468 63085 39 28 30 5 2 0 131 4 0 7 chain 21874 chr22 50818468 + 32930134 32930499 THE1B 368 + 0 368 54010 169 1 0 28 49 56 53 18 17 8 2 0 37 chain 461934 chr22 50818468 + 32941472 32946698 L1PA5 6144 + 3 6141 4080 492 1 3 725 0 1 209 1 0 575 11 10 478 1 0 81 0 2 298 0 904 26 1 2 463 0 1 6 0 2 406 1 2 1312 0 1 139 chain 122745 chr22 50818468 + 33003199 33004846 THE1C-int 1605 + 0 1605 15071 13 3 2 312 0 6 112 0 7 254 1 0 32 0 1 127 0 5 264 0 8 30 2 1 67 79 0 277 0 5 50 0 8 24 chain 12467 chr22 50818468 + 33023246 33023480 THE1B 368 + 70 307 66041 99 2 0 11 0 1 4 1 0 5 59 64 53 chain 23433 chr22 50818468 + 33035880 33036305 LTR34 700 + 256 700 51706 13 37 45 18 54 65 27 1 2 111 1 0 163 chain 5145 chr22 50818468 + 33036990 33037146 MER34A1 583 + 395 535 84936 33 62 42 33 10 14 18 chain 8187 chr22 50818468 + 33059600 33059713 MSTD 398 + 0 149 74444 94 2 30 10 0 8 7 chain 6624 chr22 50818468 + 33081198 33081274 MLT1A 405 + 294 370 78886 76 chain 17616 chr22 50818468 + 33103736 33104086 THE1B 368 + 2 368 59107 75 0 11 20 14 15 54 71 76 53 14 13 49 chain 2865 chr22 50818468 + 33104136 33104166 MLT1E1A 663 + 507 537 101108 30 chain 3767 chr22 50818468 + 33106798 33106844 MADE1 96 + 48 93 93096 13 1 0 32 chain 9745 chr22 50818468 + 33138744 33138862 THE1B-int 1605 + 1488 1605 70945 66 1 0 51 chain 23926 chr22 50818468 + 33138862 33139218 THE1B 368 + 0 368 50902 44 11 26 102 10 8 114 1 0 7 0 1 4 7 6 56 chain 39790 chr22 50818468 + 33140396 33140917 MLT2A2 560 + 0 545 34829 31 1 6 105 5 10 42 15 18 194 0 11 128 chain 21876 chr22 50818468 + 33154779 33155116 THE1B 368 + 0 348 54007 172 2 1 21 38 49 84 1 2 19 chain 119202 chr22 50818468 + 33170815 33172366 THE1D-int 1627 + 19 1588 15656 18 1 0 730 7 1 9 1 7 12 0 1 198 17 18 59 0 8 50 10 11 265 0 1 67 0 7 107 chain 377558 chr22 50818468 + 33172692 33177313 L1PA7 6471 + 1638 6465 5524 594 0 5 26 0 2 146 4 15 112 0 3 91 1 0 664 2 4 243 3 0 68 0 1 223 4 14 315 0 193 102 26 11 258 0 1 241 4 5 646 3 0 585 1 0 4 0 1 86 1 2 13 1 2 140 3 0 11 chain 21498 chr22 50818468 + 33258463 33258818 MER41C 542 + 0 542 54515 49 0 1 82 10 11 88 3 6 24 14 177 30 15 34 40 chain 23906 chr22 50818468 + 33332123 33332486 THE1B 368 + 0 368 50932 177 55 61 6 1 0 124 chain 8122 chr22 50818468 + 33359880 33360004 LTR32 486 + 76 226 74583 76 17 43 31 chain 5793 chr22 50818468 + 33401793 33401879 MLT1B 390 + 307 390 81959 15 0 1 4 7 3 60 chain 22231 chr22 50818468 + 33410318 33410701 THE1D 372 + 0 366 53507 15 0 2 39 31 22 18 7 0 70 27 27 145 7 4 24 chain 19723 chr22 50818468 + 33469009 33469384 L1PA15 4387 + 3986 4348 56759 113 7 6 16 0 5 4 1 0 46 10 9 22 15 10 39 25 22 36 3 1 15 5 0 18 chain 14016 chr22 50818468 + 33482519 33482719 L1PA7 6471 + 6284 6470 63571 113 20 6 67 chain 13385 chr22 50818468 + 33554987 33555271 MER2 342 + 17 306 64491 33 5 6 13 13 18 11 28 26 102 30 31 49 chain 28741 chr22 50818468 + 33579094 33579449 THE1B 368 + 0 368 43721 44 0 15 113 1 0 122 1 0 74 chain 460308 chr22 50818468 + 33640846 33646595 L1PA8 5853 + 112 5849 4119 190 3 7 40 2 0 43 0 24 183 0 4 67 0 12 308 3 0 82 4 8 320 0 1 4 1 0 233 4 1 267 0 2 118 26 8 153 1 5 94 0 1 180 5 6 293 0 14 71 30 1 36 1 0 88 0 1 328 0 1 653 0 1 197 0 3 78 0 1 207 36 0 89 0 1 469 0 1 4 2 0 17 0 1 6 0 1 298 0 4 50 0 2 175 5 4 42 2 0 125 7 6 41 1 0 67 chain 10342 chr22 50818468 + 33671737 33671860 MER85 139 + 5 138 69711 85 0 10 38 chain 22294 chr22 50818468 + 33792157 33792520 THE1C 375 + 0 363 53418 83 22 21 39 12 13 17 23 24 153 1 0 13 chain 42980 chr22 50818468 + 33795494 33796007 L1PA5 6144 + 5618 6144 32785 204 0 11 297 1 3 11 chain 27978 chr22 50818468 + 33800921 33801275 THE1A 353 + 0 353 44907 84 0 1 25 1 0 91 1 0 152 chain 27743 chr22 50818468 + 33834285 33834677 LTR7 482 + 0 477 45259 86 0 50 88 5 37 44 0 1 59 1 2 52 13 14 44 chain 81751 chr22 50818468 + 33846155 33847203 MER11C 1089 + 0 1063 21286 246 0 9 58 0 4 69 1 0 146 49 47 111 0 4 5 1 0 38 0 1 182 1 0 89 0 1 27 0 1 25 chain 56160 chr22 50818468 + 33857732 33859198 L1PA7 6471 + 5800 6468 27518 149 803 0 118 0 4 242 0 1 154 chain 3120 chr22 50818468 + 33876528 33876561 L1PA8 5853 + 5575 5608 98623 33 chain 5364 chr22 50818468 + 33876566 33876648 L1PA8 5853 + 5610 5691 83885 60 10 9 12 chain 11743 chr22 50818468 + 33876655 33876813 L1PA8 5853 + 5691 5847 67323 49 2 1 19 1 0 87 chain 6016 chr22 50818468 + 33901070 33901327 MLT1C 463 + 175 412 81018 15 24 0 9 57 71 25 66 56 61 chain 33524 chr22 50818468 + 33933802 33934217 L1PA8 5853 + 5275 5686 39067 289 1 0 45 2 0 72 1 0 5 chain 10837 chr22 50818468 + 33934228 33934371 L1PA8 5853 + 5712 5853 68799 27 1 0 21 1 0 93 chain 4857 chr22 50818468 + 33950625 33950693 MSTA 426 + 156 222 86385 49 3 1 16 chain 2983 chr22 50818468 + 33960969 33961000 MLT1A1 405 + 288 319 100047 31 chain 23847 chr22 50818468 + 33978795 33979069 MER11D 897 + 617 891 51026 274 chain 12680 chr22 50818468 + 33994945 33995201 THE1B 368 + 32 306 65660 26 11 25 86 1 0 6 63 68 63 chain 6870 chr22 50818468 + 34092775 34092871 MLT1B 390 + 75 170 78069 9 4 0 58 0 3 25 chain 50193 chr22 50818468 + 34099638 34100219 LTR10C 591 + 2 591 29491 527 0 8 54 chain 3452 chr22 50818468 + 34190726 34190906 MER53 195 + 8 195 95633 19 20 21 25 93 99 23 chain 5312 chr22 50818468 + 34269129 34269196 MLT1A-int 1186 + 812 879 84145 67 chain 34700 chr22 50818468 + 34304744 34305168 MER41A 554 + 0 424 38222 424 chain 5083 chr22 50818468 + 34327442 34327500 Tigger7 736 + 37 95 85237 58 chain 45830 chr22 50818468 + 34360421 34361063 L1PA8 5853 + 5195 5847 31142 144 9 18 160 1 3 17 0 1 22 1 0 45 11 13 64 1 0 8 1 0 50 2 1 19 2 1 42 1 2 42 chain 10698 chr22 50818468 + 34370193 34370414 L1PA13 3608 + 118 320 69049 20 3 0 26 2 1 12 3 0 24 44 34 56 2 0 29 chain 20766 chr22 50818468 + 34404517 34404758 L1PA5 6144 + 5892 6132 55410 67 1 0 173 chain 45705 chr22 50818468 + 34442719 34443323 THE1B-int 1605 + 963 1600 31205 128 7 15 11 8 6 161 2 29 287 chain 5312 chr22 50818468 + 34459554 34459633 MADE1 96 + 1 96 84136 41 3 19 35 chain 23720 chr22 50818468 + 34478130 34478466 THE1C 375 + 0 336 51248 186 0 1 16 0 3 5 21 23 13 8 2 87 chain 19671 chr22 50818468 + 34497669 34497920 L1MA8 2339 + 635 885 56824 170 1 0 80 chain 4367 chr22 50818468 + 34505247 34505299 L1P5 443 + 339 391 89069 52 chain 24385 chr22 50818468 + 34505521 34505996 L1PB1 5432 + 4970 5413 50185 24 2 3 106 1 2 10 3 0 19 1 0 13 27 20 49 6 5 16 1 0 43 1 0 15 1 0 5 2 0 13 47 33 24 1 0 21 1 0 13 1 0 9 chain 11297 chr22 50818468 + 34518133 34518267 MLT2A1 477 + 0 138 68086 13 0 3 103 0 1 18 chain 131288 chr22 50818468 + 34519434 34521434 HERVL-int 5654 + 3767 5654 13891 74 8 6 184 338 0 331 0 8 157 8 0 34 0 221 90 0 1 19 5 6 599 5 9 148 chain 17844 chr22 50818468 + 34547683 34548042 L1PB1 5432 + 5105 5427 58833 12 3 0 21 2 0 9 1 0 7 9 5 8 2 0 53 2 1 15 1 0 45 1 0 15 14 1 30 2 0 5 1 0 7 0 3 5 10 5 18 1 0 21 1 0 13 1 0 19 1 0 4 chain 13808 chr22 50818468 + 34548099 34548302 L1PREC2 3366 + 1004 1213 63875 92 1 0 67 16 23 27 chain 8980 chr22 50818468 + 34562687 34562838 MER85 139 + 4 139 72600 92 32 16 27 chain 6331 chr22 50818468 + 34576133 34576215 LTR42 492 + 340 419 79890 13 3 0 66 chain 55510 chr22 50818468 + 34609681 34610430 Charlie3 2679 + 1702 2674 27714 182 1 0 231 0 1 14 36 267 206 21 13 58 chain 39576 chr22 50818468 + 34613670 34614123 L1PA4 6152 + 3630 4085 34976 114 1 3 338 chain 27429 chr22 50818468 + 34615897 34616430 Tigger3b 1229 + 184 757 45660 57 0 3 40 0 7 32 14 13 216 117 0 9 18 166 30 chain 22350 chr22 50818468 + 34721772 34722047 AluSc 308 + 11 286 53342 275 chain 3064 chr22 50818468 + 34777465 34777501 THE1C-int 1605 + 174 210 99188 36 chain 24532 chr22 50818468 + 34785305 34785615 THE1B 368 + 0 306 49973 169 1 0 29 3 0 108 chain 496684 chr22 50818468 + 34788714 34794475 L1PA5 6144 + 0 5775 3240 43 0 1 485 9 11 895 12 12 386 1 6 279 0 1 1301 2 0 69 20 21 643 0 1 41 0 2 1100 0 4 52 2 0 4 0 1 417 chain 17104 chr22 50818468 + 34808181 34808580 MSTA 426 + 1 426 59688 49 1 0 53 0 1 5 38 49 39 76 70 28 34 55 76 chain 4033 chr22 50818468 + 34811476 34811542 MADE1 96 - 2 96 91216 22 7 35 37 chain 528209 chr22 50818468 + 34816799 34822923 L1PA5 6144 + 3 6134 1905 117 1 15 14 20 6 878 9 7 5 0 1 107 0 1 35 0 1 1157 1 0 99 2 0 730 1 0 19 1 3 1168 0 1 930 0 4 442 0 3 243 0 1 41 1 0 103 chain 24872 chr22 50818468 + 34834607 34835022 LTR7 482 + 0 482 49486 68 7 96 16 52 0 44 8 40 13 3 0 88 1 2 115 chain 255345 chr22 50818468 + 34835048 34838355 HERVH-int 3825 + 25 3825 8105 308 2 1 58 146 377 11 2 0 7 10 15 253 0 8 48 9 43 72 15 0 205 9 0 38 2 1 153 0 1 61 4 31 370 8 13 1021 9 219 486 chain 29834 chr22 50818468 + 34839608 34840024 LTR7 482 + 0 482 42201 68 9 47 109 0 1 24 2 0 17 0 31 31 3 0 37 1 2 115 chain 40484 chr22 50818468 + 34850232 34850806 MER41A 554 + 0 554 34319 87 5 6 82 12 5 109 25 8 81 2 0 90 0 5 81 chain 3820 chr22 50818468 + 34898882 34898930 MLT1H 522 + 111 159 92713 48 chain 6214 chr22 50818468 + 34905742 34905868 MER21B 843 + 705 820 80302 43 8 5 14 2 3 21 4 0 19 1 0 3 4 0 7 chain 34836 chr22 50818468 + 34916819 34917270 MER4A1 472 + 0 472 38130 71 1 2 174 4 24 190 0 1 6 1 0 4 chain 62941 chr22 50818468 + 34921338 34922178 L1PA8A 6298 + 5442 6290 25645 47 1 12 29 2 0 40 0 4 14 9 12 253 10 9 315 8 1 112 chain 2404 chr22 50818468 + 34926498 34926617 L1PA5 6144 + 5522 5642 104144 16 75 76 28 chain 9893 chr22 50818468 + 34926632 34926744 L1PA5 6144 + 5727 5840 70631 85 0 1 27 chain 24463 chr22 50818468 + 34926744 34927041 L1PA5 6144 + 5847 6144 50089 297 chain 11612 chr22 50818468 + 34927284 34927458 L1MA2 4263 + 3940 4105 67550 18 1 0 4 7 6 90 7 0 47 chain 14678 chr22 50818468 + 34955876 34956093 L1PA8 5853 + 5645 5853 62700 33 17 10 52 2 1 19 1 0 93 chain 4005 chr22 50818468 + 34989478 34989530 MIRb 242 + 55 105 91415 12 2 0 38 chain 5241 chr22 50818468 + 35036406 35036477 MLT1A1 405 + 270 350 84499 13 3 12 55 chain 4248 chr22 50818468 + 35044846 35044891 LTR17 781 + 281 326 89835 45 chain 93548 chr22 50818468 + 35056783 35059899 L1PA15 4387 + 2926 4355 19103 109 0 1 132 2 0 238 7 8 30 1657 2 367 2 0 14 4 0 62 7 5 12 0 1 23 3 2 69 7 3 100 1 0 26 15 14 41 1 0 21 4 0 10 6 5 16 37 34 12 11 13 6 2 0 12 3 1 12 8 2 13 1 0 13 chain 17155 chr22 50818468 + 35064908 35065169 L1PA8 5853 + 5591 5847 59628 14 6 4 57 25 23 71 1 0 87 chain 4263 chr22 50818468 + 35098383 35098430 LTR37A 408 + 291 338 89749 47 chain 21821 chr22 50818468 + 35129367 35129627 AluY 311 + 40 298 54075 90 2 0 168 chain 375405 chr22 50818468 + 35165680 35170011 L1P1 4361 + 4 4341 5564 427 0 1 250 0 1 351 1 0 329 0 1 594 0 1 551 1 0 336 0 1 707 0 1 186 0 2 20 0 3 384 1 0 155 1 0 23 2 1 12 chain 48290 chr22 50818468 + 35181778 35182334 L1PA7 6471 + 5912 6468 30184 556 chain 23101 chr22 50818468 + 35200668 35201043 THE1B 368 + 0 368 52211 47 0 1 59 26 28 34 33 26 9 3 0 89 1 0 17 0 1 57 chain 48109 chr22 50818468 + 35240333 35240995 LTR12_ 688 + 0 680 30257 135 1 50 62 11 12 170 60 30 12 1 0 134 1 0 75 chain 43799 chr22 50818468 + 35244414 35244971 LTR10C 591 + 36 591 32255 102 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78928 26 0 3 57 chain 3456 chr22 50818468 + 37057116 37057160 MIRb 242 + 67 111 95581 44 chain 24893 chr22 50818468 + 37119362 37119654 AluSp 311 + 6 298 49448 292 chain 6181 chr22 50818468 + 37189873 37189939 MER41B 635 + 46 112 80421 66 chain 5450 chr22 50818468 + 37292068 37292131 MLT1J 494 + 102 165 83461 63 chain 127928 chr22 50818468 + 37786199 37787607 SVA_D 2077 + 8 2070 14291 29 1 0 402 0 40 319 0 615 657 chain 6432 chr22 50818468 + 37799139 37799214 MER83 447 + 329 404 79563 75 chain 15320 chr22 50818468 + 37836528 37836731 L1PA8 5853 + 5650 5849 61882 29 1 0 14 1 0 47 2 1 19 1 0 89 chain 23749 chr22 50818468 + 37952701 37953024 MER1B 344 + 0 336 51197 96 4 15 105 4 0 51 6 12 57 chain 82789 chr22 50818468 + 38154214 38156155 L1M1 2793 + 522 2695 21065 11 1 0 9 25 19 9 1 0 5 7 6 9 3 0 9 36 20 16 82 26 41 66 49 14 32 11 23 7 6 24 6 4 6 1 0 37 0 2 15 5 3 107 1 0 123 343 664 127 12 18 58 0 3 5 0 1 21 0 23 60 2 1 112 3 0 61 4 8 19 1 6 122 1 0 133 24 22 39 3 8 37 1 0 11 1 0 10 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302 339 27 26 1 9 149 0 3 71 0 4 37 0 2 227 chain 46146 chr22 50818468 + 39114232 39114865 LTR6A 649 + 10 649 30986 15 17 21 33 17 20 5 3 0 15 0 1 318 0 2 147 1 0 62 chain 41142 chr22 50818468 + 39115817 39116959 MER4E1 777 + 0 777 33886 25 8 0 109 249 198 24 0 1 70 312 0 115 10 16 65 11 10 144 chain 8276 chr22 50818468 + 39119033 39119128 LTR44 473 + 370 465 74224 95 chain 23543 chr22 50818468 + 39130377 39130723 LTR7C 471 + 0 446 51516 75 1 91 23 10 14 21 1 4 149 0 2 28 1 0 32 0 2 5 chain 5017 chr22 50818468 + 39142870 39142924 Tigger3b 1229 + 484 538 85582 54 chain 2946 chr22 50818468 + 39186053 39186089 L1ME3A 1206 + 508 544 100449 36 chain 29309 chr22 50818468 + 39211662 39211973 AluYb8 318 + 0 312 42875 108 0 1 203 chain 187725 chr22 50818468 + 39216823 39218963 L1PA6 6164 + 4004 6162 10223 401 1 20 617 1 0 266 2 0 344 0 1 126 0 1 382 chain 8100 chr22 50818468 + 39305429 39305554 Tigger2a 444 + 210 321 74639 98 14 0 13 chain 116430 chr22 50818468 + 39357358 39358791 LTR12C 1709 + 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40537560 40537602 SVA_F 1814 + 964 1006 76350 42 chain 1275 chr22 50818468 + 40537614 40537691 SVA_F 1814 + 775 855 73331 15 34 37 28 chain 2016 chr22 50818468 + 40537629 40537660 SVA_F 1814 + 401 432 90376 31 chain 4015 chr22 50818468 + 40537691 40537734 SVA_F 1814 + 968 1011 87941 43 chain 2499 chr22 50818468 + 40537748 40537774 SVA_F 1814 + 1102 1128 60588 26 chain 8900 chr22 50818468 + 40537774 40537913 SVA_F 1814 + 888 964 58027 56 81 18 2 chain 7784 chr22 50818468 + 40537830 40537911 SVA_F 1814 + 1184 1265 60588 81 chain 27644 chr22 50818468 + 40554790 40555231 MSTB-int 1649 + 1118 1628 45400 29 25 82 36 0 4 6 23 18 19 1 4 193 5 9 17 1 7 86 chain 15547 chr22 50818468 + 40700433 40701126 MER34D 576 + 0 253 61590 58 0 2 11 436 0 93 13 12 28 16 11 38 chain 6138 chr22 50818468 + 40715148 40715260 L1MB2 1706 + 1526 1627 80573 50 15 6 16 1 0 13 1 0 16 chain 3263 chr22 50818468 + 40728439 40728477 tRNA-Gly-GGA 38 + 0 38 97355 38 chain 19010 chr22 50818468 + 40737570 40737886 L1PA15 4387 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50818468 + 42982096 42982130 SVA_E 1901 + 1106 1140 61318 34 chain 14169 chr22 50818468 + 43093249 43093408 L1PA5 6144 + 5985 6144 63358 159 chain 4817 chr22 50818468 + 43194598 43194688 L1PB1 5432 + 5340 5424 86613 6 2 0 17 8 7 22 1 0 12 1 0 14 1 0 6 chain 10794 chr22 50818468 + 43202615 43202741 THE1D 372 + 193 319 68872 126 chain 9849 chr22 50818468 + 43324841 43324981 MLT1C 463 + 12 146 70721 112 6 0 22 chain 22815 chr22 50818468 + 43348586 43348950 MSTA 426 + 23 426 52634 33 16 13 39 6 30 89 16 14 55 1 21 109 chain 23738 chr22 50818468 + 43350747 43351042 AluSp 311 + 10 310 51213 46 5 10 244 chain 86016 chr22 50818468 + 43558944 43560028 L1PA8 5853 + 4772 5853 20433 5 0 2 230 0 2 553 6 5 31 10 8 70 14 12 50 2 1 18 3 2 92 chain 21981 chr22 50818468 + 43611234 43611514 L1PREC2 3366 + 2457 2737 53864 280 chain 19214 chr22 50818468 + 43648274 43648612 L1PA16 3655 + 3306 3619 57333 110 1 0 22 0 1 109 68 48 7 5 0 16 chain 25875 chr22 50818468 + 43650182 43650543 THE1B 368 + 0 368 47906 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3680 chr22 50818468 + 44878364 44878406 MER44C 733 + 68 110 93743 42 chain 23777 chr22 50818468 + 44910417 44910751 THE1B 368 + 0 348 51148 44 11 26 37 0 1 35 0 2 19 5 4 122 3 0 58 chain 4044 chr22 50818468 + 44912352 44912396 THE1B 368 + 0 44 91128 44 chain 9371 chr22 50818468 + 44912444 44912575 THE1B 368 + 108 241 71767 55 1 0 4 2 1 46 0 4 23 chain 10701 chr22 50818468 + 44912575 44912702 THE1B 368 + 244 368 69042 47 3 0 77 chain 11878 chr22 50818468 + 44919291 44919491 MER30 238 + 30 238 67055 44 0 2 16 29 43 95 8 0 8 chain 10236 chr22 50818468 + 45025812 45025927 L1PA6 6164 + 6047 6162 69934 115 chain 28965 chr22 50818468 + 45052612 45052990 MER4A1 472 + 0 393 43387 29 0 1 177 0 10 14 10 14 148 chain 18654 chr22 50818468 + 45054025 45054317 THE1B 368 + 0 306 57941 54 7 16 43 0 1 55 1 0 21 3 5 4 0 1 9 1 5 11 6 5 10 1 0 66 chain 26310 chr22 50818468 + 45097351 45097691 THE1B 368 + 0 341 47254 71 1 2 34 2 3 65 1 0 166 chain 24092 chr22 50818468 + 45130435 45131006 LTR7B 505 + 0 505 50658 108 0 10 46 16 33 26 0 129 21 222 0 68 14 13 20 0 1 30 chain 28811 chr22 50818468 + 45162109 45162544 LTR7Y 441 + 0 441 43612 103 12 3 42 78 93 200 chain 77117 chr22 50818468 + 45169405 45170372 LTR13A 966 + 0 966 22283 122 5 6 150 4 0 421 0 1 212 14 15 39 chain 38609 chr22 50818468 + 45188740 45189285 LTR14 556 + 0 556 35634 257 0 5 18 60 57 32 0 3 20 0 4 42 2 0 30 1 5 83 chain 44835 chr22 50818468 + 45374427 45375008 MER4-int 2692 + 2074 2692 31677 69 0 2 49 0 10 78 0 1 46 1 0 151 2 0 4 0 6 30 0 5 12 0 16 139 chain 37557 chr22 50818468 + 45375016 45375490 MER4A1 472 + 0 472 36364 159 1 0 101 6 5 207 chain 20025 chr22 50818468 + 45407111 45407459 MER4A 717 + 0 332 56355 68 86 68 138 0 2 56 chain 95048 chr22 50818468 + 45436545 45437638 LTR12C 1709 + 0 1709 18901 650 0 485 89 0 4 163 0 119 166 0 8 25 chain 22541 chr22 50818468 + 45468261 45468586 MER4A 717 + 1 537 53057 92 4 178 16 3 0 73 7 47 130 chain 23242 chr22 50818468 + 45483441 45483767 MER83B 357 + 11 328 52015 118 30 21 178 chain 5860 chr22 50818468 + 45536222 45536362 L1MB3 1562 + 1389 1501 81651 27 53 25 60 chain 4832 chr22 50818468 + 45607238 45607295 MER21C 908 + 589 646 86531 57 chain 4100 chr22 50818468 + 45622616 45622662 MER52C 1267 + 1007 1053 90777 46 chain 16969 chr22 50818468 + 45814753 45815019 MER1B 344 + 66 344 59833 14 16 23 113 4 0 36 12 22 5 2 0 6 0 1 58 chain 12630 chr22 50818468 + 45860901 45861056 L1PA2 6032 + 5870 6032 65754 13 1 8 141 chain 20595 chr22 50818468 + 46019389 46019729 THE1D 372 + 0 332 55645 53 37 25 33 1 2 52 26 28 97 0 1 41 chain 20989 chr22 50818468 + 46184591 46184868 AluSz6 309 + 11 296 55138 40 6 14 231 chain 21786 chr22 50818468 + 46210069 46210329 AluSp 311 + 42 302 54110 260 chain 37717 chr22 50818468 + 46333166 46333725 MER4A 717 + 159 717 36261 91 30 32 203 19 15 125 4 1 59 1 5 27 chain 6661 chr22 50818468 + 46334296 46334379 MER65A 464 + 329 412 78769 83 chain 17931 chr22 50818468 + 46410954 46411190 AluSc 308 + 29 271 58716 68 3 0 5 0 10 145 1 0 14 chain 21625 chr22 50818468 + 46493579 46493887 THE1B 368 + 0 310 54323 145 1 0 16 1 2 38 0 1 7 1 5 18 1 0 8 1 0 61 1 0 9 chain 55191 chr22 50818468 + 46515875 46516485 L1PA5 6144 + 5402 6012 27812 610 chain 38105 chr22 50818468 + 46571332 46571856 LTR10E 629 + 0 548 35985 15 0 1 30 0 3 106 23 19 62 1 0 4 0 1 29 1 27 27 1 0 55 1 0 61 0 1 93 1 0 14 chain 4928 chr22 50818468 + 46877141 46877260 MIRc 230 + 69 197 86007 37 45 54 37 chain 23093 chr22 50818468 + 47100461 47100807 THE1B 368 + 0 368 52219 42 0 6 8 0 9 12 0 14 81 12 11 19 5 0 85 7 6 75 chain 55380 chr22 50818468 + 47103751 47105145 MER4E1 777 + 0 773 27748 25 1 0 52 4 0 123 2 1 19 0 5 43 302 0 59 0 4 22 314 3 17 0 1 91 0 1 68 37 24 215 chain 146573 chr22 50818468 + 47183447 47186080 L1MA1 4479 + 279 4190 12570 269 4 3 149 3 7 47 345 1648 143 3 0 10 1 0 24 40 54 16 0 1 17 2 1 93 19 17 26 1 0 50 16 12 92 1 0 27 2 0 40 4 3 130 2 0 17 4 0 24 0 1 51 1 0 12 5 0 8 14 16 23 6 1 77 3 0 130 2 0 26 1 2 169 1 0 24 2 0 13 0 1 4 0 2 67 1 0 19 3 1 16 11 17 68 1 0 5 3 0 67 1 2 25 8 13 10 10 9 27 2 0 37 1 0 9 1 0 4 26 17 18 chain 19584 chr22 50818468 + 47248538 47248893 THE1D 372 + 0 349 56916 51 9 0 18 35 36 39 0 1 21 32 34 25 1 0 124 chain 4158 chr22 50818468 + 47252478 47252524 MER66B 489 + 417 463 90409 46 chain 59946 chr22 50818468 + 47261925 47262595 L1PA5 6144 + 5460 6131 26388 58 0 1 612 chain 12045 chr22 50818468 + 47339348 47339495 MLT2A2 560 + 413 560 66769 147 chain 35243 chr22 50818468 + 47537468 47537890 L1PA10 4194 + 3576 4015 37870 76 0 4 47 0 9 108 0 4 191 chain 22732 chr22 50818468 + 47559574 47559975 MLT2A2 560 + 0 515 52782 103 3 0 64 66 65 60 0 98 16 10 21 30 1 6 39 0 4 9 chain 10721 chr22 50818468 + 47568129 47568377 MER65A 464 + 1 256 69012 46 43 42 15 37 51 6 6 0 95 chain 30007 chr22 50818468 + 47578321 47578766 MER4A1 472 + 0 472 42044 34 7 0 11 11 11 43 0 2 129 24 45 91 0 11 95 chain 192920 chr22 50818468 + 47582434 47585402 MER4-int 2692 + 37 2691 9976 62 1 0 8 0 1 110 0 1 26 0 1 298 1 10 38 3 0 34 0 1 238 323 0 48 5 6 198 24 0 12 1 13 98 16 34 38 37 15 9 0 9 14 0 5 47 0 1 49 51 47 128 1 3 123 1 0 4 0 1 95 0 1 88 3 1 53 1 0 62 0 4 190 0 1 167 3 1 255 0 1 5 chain 10036 chr22 50818468 + 47592469 47592599 MSTA 426 + 276 426 70339 20 1 21 109 chain 7080 chr22 50818468 + 47603306 47603391 MSTA 426 + 9 93 77327 62 1 0 22 chain 6497 chr22 50818468 + 47603391 47603469 MSTA 426 + 16 93 77326 55 1 0 22 chain 22860 chr22 50818468 + 47639211 47639475 AluYa5 310 + 53 310 52561 70 3 0 3 4 0 184 chain 25230 chr22 50818468 + 47673875 47674218 L1PA8 5853 + 5517 5853 48896 47 1 0 45 2 0 70 1 0 15 4 3 43 2 1 19 1 0 93 chain 24700 chr22 50818468 + 47823635 47823994 THE1D 372 + 18 372 49736 34 9 0 99 18 23 14 6 5 179 chain 10951 chr22 50818468 + 47827093 47827284 L1PA8 5853 + 5663 5853 68619 16 1 0 11 1 0 50 2 1 13 15 14 36 6 9 40 chain 21785 chr22 50818468 + 47849039 47849439 MER1A 529 + 59 458 54113 21 9 13 17 97 92 256 chain 3361 chr22 50818468 + 47893794 47893832 MER58A 224 + 168 206 96483 38 chain 5582 chr22 50818468 + 48022976 48023048 MLT1D 503 + 429 501 82890 72 chain 70055 chr22 50818468 + 48059226 48060046 L1PA7 6471 + 5641 6461 23983 208 2 0 202 1 0 90 0 3 317 chain 14685 chr22 50818468 + 48195978 48196167 THE1B 368 + 172 356 62690 28 4 0 93 1 0 63 chain 7417 chr22 50818468 + 48216222 48216408 MER58A 224 + 42 224 76354 39 72 68 32 1 0 8 0 1 34 chain 3284 chr22 50818468 + 48297862 48297897 THE1D 372 + 337 372 97154 35 chain 13966 chr22 50818468 + 48326120 48326267 AluYg6 310 + 156 303 63633 147 chain 20909 chr22 50818468 + 48683708 48684062 THE1D 372 + 2 360 55242 155 57 64 44 2 0 40 8 7 48 chain 37764 chr22 50818468 + 48716210 48716684 L1PA8 5853 + 5386 5853 36232 178 1 0 46 2 0 69 1 0 12 1 0 49 2 1 19 2 1 92 chain 36900 chr22 50818468 + 48722257 48722712 L1PA7 6471 + 6013 6469 36814 40 4 2 149 1 0 108 0 2 117 0 1 25 0 1 11 chain 5512 chr22 50818468 + 48922014 48922325 L1MCb 1641 + 27 335 83187 5 2 0 39 181 183 28 31 28 25 chain 119099 chr22 50818468 + 48970440 48972030 L1PB1 5432 + 3466 5103 15678 61 1 14 130 0 1 61 4 7 79 9 19 557 0 1 303 0 6 97 16 14 175 10 25 87 chain 15641 chr22 50818468 + 49127099 49127340 L1PA8 5853 + 5608 5850 61480 58 2 0 12 2 1 8 0 6 47 2 1 19 14 13 77 chain 3171 chr22 50818468 + 49129795 49129830 MADE1 96 + 53 88 98193 35 chain 7726 chr22 50818468 + 49167769 49167858 MSTB 430 + 320 409 75546 89 chain 11812 chr22 50818468 + 49304798 49304931 AluYk4 311 + 157 290 67182 133 chain 25493 chr22 50818468 + 49394873 49395222 THE1C 375 + 0 364 48495 108 13 28 44 0 1 4 13 13 151 1 0 15 chain 37076 chr22 50818468 + 49416056 49416456 SVA_C 1631 + 1217 1617 36696 400 chain 22718 chr22 50818468 + 49560760 49561040 AluSp 311 + 19 299 52804 92 0 1 20 1 0 167 chain 3575 chr22 50818468 + 49725526 49725567 LTR52 417 + 324 365 94621 41 chain 4516 chr22 50818468 + 49738691 49738923 7SK 245 + 12 245 88228 32 164 165 36 chain 68607 chr22 50818468 + 49739749 49740627 THE1A-int 1579 + 0 893 24308 537 0 4 12 1 2 173 4 14 151 chain 210408 chr22 50818468 + 49742064 49744690 L1PA8 5853 + 3232 5853 9341 194 0 1 194 5 4 177 0 9 61 6 7 336 2 1 364 0 4 12 0 1 277 0 1 126 16 14 254 9 0 252 1 0 19 29 28 40 2 0 44 6 5 22 1 0 11 1 0 50 2 1 19 1 0 93 chain 36558 chr22 50818468 + 49746851 49747343 LTR10E 629 + 5 548 37038 5 0 1 84 26 79 148 5 4 53 1 0 154 1 0 15 chain 19473 chr22 50818468 + 50055832 50056080 MER41A 554 + 13 264 57066 167 9 12 72 chain 21452 chr22 50818468 + 50237846 50238117 AluSp 311 + 6 266 54582 150 11 0 110 chain 71940 chr22 50818468 + 50240981 50241969 LTR13 1007 + 1 1007 23559 72 3 1 17 0 4 139 1 0 4 4 5 138 18 19 51 0 1 228 0 12 11 0 2 219 0 2 22 20 22 6 4 0 31 chain 88013 chr22 50818468 + 50273212 50274222 LTR13 1007 + 0 1007 20042 37 0 2 387 7 0 542 0 2 37 chain 4601 chr22 50818468 + 50295369 50295421 MIR 256 + 64 116 87787 52 chain 78782 chr22 50818468 + 50533867 50534815 LTR13A 966 + 0 966 21924 127 0 1 14 8 11 346 0 5 293 5 14 155 chain 6953 chr22 50818468 + 50629266 50629703 LTR49 580 + 94 531 77760 39 1 0 5 11 165 14 150 1 28 49 44 35 87 88 18 chain 4581 chr22 50818468 + 50643171 50643224 MER31A 484 + 40 93 87904 53 chain 26497 chr22 50818468 + 50645105 50645497 MER4A1 472 + 0 472 46984 140 0 58 27 0 21 23 33 33 144 3 4 22 chain 132599 chr22 50818468 + 50649627 50652640 MER4-int 2692 + 1 2654 13769 9 3 0 26 2 0 63 23 19 37 0 1 168 4 10 69 3 4 132 0 9 177 4 1 52 0 13 119 1 0 37 9 761 62 15 17 16 563 27 115 2 1 72 1 0 97 303 13 146 0 1 6 316 0 257 2 0 70 14 28 18 chain 36743 chr22 50818468 + 50652685 50653154 MER4A1 472 + 0 472 36929 396 9 12 64 chain 6227 chr22 50818468 + 50669803 50669895 HY3 101 + 0 96 80248 47 8 12 37 chain 28436 chr22 50818468 + 50805607 50805911 AluYb8 318 + 4 308 44214 304 chain 2758 chr22_KI270731v1_random 150754 + 63777 63827 MER5B 177 + 102 150 101915 15 8 6 27 chain 25089 chr22_KI270731v1_random 150754 + 106226 106575 L1PB 1623 + 649 996 49131 46 1 0 161 24 23 117 chain 450632 chr22_KI270732v1_random 41543 + 1733 7056 L1PA4 6152 + 1 5332 4379 116 2 1 462 1 0 21 0 1 355 0 4 799 1 0 1377 0 1 1058 5 4 4 0 1 933 0 1 160 1 5 28 chain 9775 chr22_KI270732v1_random 41543 + 15499 15604 L1HS 6032 + 5927 6032 70869 105 chain 233065 chr22_KI270733v1_random 179772 + 3474 6412 L1PA6 6164 + 3206 6159 8664 222 2 0 5 1 3 267 0 13 482 1 0 83 2 1 38 0 1 21 1 0 4 0 1 52 1 0 651 4 5 336 0 2 649 4 5 112 chain 75680 chr22_KI270733v1_random 179772 + 91934 92784 L1PA3long 6157 + 5308 6157 22665 590 1 0 259 chain 273915 chr22_KI270733v1_random 179772 + 99454 102737 L1P1 4361 + 1 3290 7605 719 5 6 279 0 1 42 0 1 5 2 1 174 1 2 578 0 2 733 0 1 206 1 0 21 0 1 4 1 0 425 0 1 87 chain 35514 chr22_KI270733v1_random 179772 + 103461 103936 L1PA5 6144 + 5659 6135 37716 53 0 1 178 4 2 71 23 25 146 chain 16259 chr22_KI270733v1_random 179772 + 134824 135264 LSU-rRNA_Hsa 377 + 19 366 60667 21 9 8 60 1 0 16 1 0 14 4 0 27 177 93 42 3 1 65 chain 24875 chr22_KI270734v1_random 165050 + 94476 94825 L1PB 1623 + 649 996 49484 46 1 0 161 24 23 117 chain 76477 chr22_KI270734v1_random 165050 + 163972 164940 LTR5_Hs 974 + 0 974 22445 285 0 1 181 0 1 188 1 0 163 8 15 19 20 18 103 chain 6908 chr22_KI270734v1_random 165050 + 164962 165050 HERVK-int 6823 + 19 104 77929 23 1 0 20 1 0 38 1 0 4 chain 12242 chr22_KI270735v1_random 42811 + 32154 32399 THE1B 368 + 15 284 66392 29 27 42 83 1 0 29 35 45 41 chain 78992 chr22_KI270736v1_random 181920 + 22111 23100 LTR5B 1012 + 0 1012 21876 128 1 14 258 0 2 9 2 1 5 0 1 163 1 0 4 3 4 240 0 7 138 0 1 37 chain 19467 chr22_KI270737v1_random 103838 + 90164 90477 THE1B 368 + 4 341 57075 40 0 15 110 2 1 28 41 51 92 chain 383619 chr22_KI270738v1_random 99375 + 89138 95785 L1PA2 6032 + 0 6027 5417 2414 2248 1527 1489 25 128 461 2 0 8 chain 460681 chr22_KI270739v1_random 73985 + 35953 42448 L1PA2 6032 + 2 6032 4108 35 6 7 698 1 0 492 1217 692 273 0 1 861 1 0 1158 1 4 959 0 4 196 25 87 288 5 0 266 4 0 9 chain 78782 chr22_KI270739v1_random 73985 + 49119 50070 L1PA3long 6157 + 5203 6157 21925 103 0 1 71 1 0 543 0 1 160 1 3 72 chain 43379 chr2_KI270716v1_random 153799 + 12533 13016 L1PA2 6032 + 5541 6029 32522 332 3 8 148 chain 26817 chr3 198295559 + 25297 25702 MER57B1 401 + 0 401 46515 136 10 2 52 19 20 42 4 1 68 1 0 17 0 7 56 chain 25186 chr3 198295559 + 48428 48786 THE1C 375 + 0 352 48975 125 3 0 24 16 15 22 0 1 10 3 0 155 chain 45494 chr3 198295559 + 51332 51918 LTR10C 591 + 0 590 31310 49 0 1 276 0 1 17 24 25 188 0 1 32 chain 42398 chr3 198295559 + 113902 114433 MER41A 554 + 8 554 33131 140 0 1 25 0 3 137 1 0 83 11 23 134 chain 4238 chr3 198295559 + 215132 215186 L1MA6 2487 + 2232 2284 89894 45 2 0 7 chain 4954 chr3 198295559 + 355835 355895 MIR 256 + 23 83 85873 60 chain 3668 chr3 198295559 + 391950 391996 MER58A 224 + 24 70 93845 46 chain 20976 chr3 198295559 + 392990 393247 AluY 311 + 39 297 55155 93 7 8 157 chain 153257 chr3 198295559 + 478270 480141 L1PA8A 6298 + 4408 6292 12161 417 1 0 217 8 17 379 0 1 45 0 3 16 1 0 593 0 1 31 11 10 44 3 4 41 0 1 64 chain 24773 chr3 198295559 + 532848 533211 THE1B 368 + 0 368 49629 10 0 1 158 1 0 27 11 18 10 13 12 4 1 0 128 chain 159460 chr3 198295559 + 652574 654910 L1PA7 6471 + 4432 6468 11783 41 1 0 4 0 1 45 0 10 280 0 4 527 0 1 22 12 9 251 7 3 13 8 9 89 0 2 55 316 0 159 2 3 172 1 0 219 0 7 103 2 0 7 chain 75593 chr3 198295559 + 697784 698591 L1PA2 6032 + 5220 6027 22695 807 chain 125060 chr3 198295559 + 717884 719457 L1PA7 6471 + 4420 6468 14690 67 0 13 303 0 1 178 0 3 241 6 7 385 1 0 46 0 462 87 1 0 15 0 2 82 6 4 102 0 1 43 4 0 6 chain 96216 chr3 198295559 + 761741 762812 L1PA3long 6157 + 3296 4369 18747 301 0 1 120 0 1 650 chain 3111 chr3 198295559 + 771398 771431 L1MDa 1598 + 1116 1149 98681 33 chain 23745 chr3 198295559 + 807222 807663 MER75 514 + 70 514 51204 159 127 129 139 0 1 16 chain 542281 chr3 198295559 + 809377 815402 L1PA3long 6157 + 0 6156 1192 152 0 1 373 4 0 250 0 128 148 0 2 1338 0 4 866 0 1 2044 1 0 849 chain 496668 chr3 198295559 + 816201 822618 L1PA7 6471 + 0 6465 3242 799 2 6 348 0 1 56 0 4 26 0 4 280 0 1 104 0 2 175 1 0 4 18 17 342 0 1 925 1 5 59 12 13 126 4 3 4 0 1 123 0 1 119 0 4 273 0 1 9 6 5 832 1 5 277 1 2 27 11 9 266 2 1 5 0 1 12 1 3 340 3 17 63 0 5 6 3 0 6 6 9 112 8 9 288 0 1 219 0 1 40 12 11 49 3 0 8 chain 6519 chr3 198295559 + 829386 829465 LTR28 1034 + 21 101 79271 6 0 1 73 chain 12432 chr3 198295559 + 899400 899537 L1PA4 6152 + 6014 6151 66092 137 chain 30576 chr3 198295559 + 912710 913205 LTR10A 586 + 24 517 41497 35 0 8 7 0 1 28 0 21 16 1 0 66 5 6 23 61 6 31 11 21 127 0 13 84 chain 35343 chr3 198295559 + 913574 914042 MER4A1 472 + 0 472 37805 220 0 1 5 14 16 98 0 1 131 chain 34554 chr3 198295559 + 929627 930078 MLT2A1 477 + 0 477 38314 57 1 2 83 0 1 28 3 0 153 1 0 83 1 29 41 chain 9476 chr3 198295559 + 998087 998617 MER21B 843 + 0 525 71545 17 10 0 12 91 104 83 271 263 46 chain 24953 chr3 198295559 + 1166667 1167044 L1PA8 5853 + 5478 5847 49356 86 1 0 32 1 0 12 2 0 49 0 1 4 2 1 16 1 0 6 15 14 41 2 1 19 7 6 81 chain 157907 chr3 198295559 + 1237108 1239243 L1PBa 3878 + 736 3748 11886 119 0 4 114 23 14 513 0 3 30 0 1 80 4 0 7 36 0 21 1 0 785 0 302 244 12 632 112 1 0 22 2 0 9 chain 14742 chr3 198295559 + 1245338 1245674 L1PB1 5432 + 5114 5422 62611 24 1 0 6 1 0 14 16 10 52 19 17 27 0 1 16 1 0 19 2 0 9 8 0 17 3 1 5 1 0 7 22 20 11 1 0 21 1 0 13 1 0 18 chain 3626 chr3 198295559 + 1365677 1365717 MADE1 96 + 51 91 94205 40 chain 547330 chr3 198295559 + 1387560 1393568 L1PA2 6032 + 0 6032 902 53 1 13 832 1 0 832 0 1 257 2 0 164 0 5 897 0 1 82 0 4 252 0 2 2618 3 5 14 chain 36100 chr3 198295559 + 1455323 1455776 LTR12_ 688 + 0 688 37341 142 1 235 17 0 1 293 chain 535926 chr3 198295559 + 1477491 1483624 L1PA5 6144 + 3 6144 1568 1232 2 1 206 4 8 79 0 2 1214 1 2 429 1 0 2118 0 1 515 0 2 332 chain 78836 chr3 198295559 + 1536506 1537505 MER11A 1151 + 0 1151 21911 61 1 100 130 0 2 391 0 1 135 0 50 101 0 1 8 1 0 26 1 0 79 7 6 11 0 2 47 chain 148476 chr3 198295559 + 1564880 1566540 L1PA3long 6157 + 4518 6157 12457 265 22 0 1225 0 1 148 chain 67868 chr3 198295559 + 1586961 1588051 MER11A 1151 + 0 1119 24480 85 1 92 51 1 0 35 13 12 17 7 3 29 0 2 114 22 4 14 1 0 80 0 1 145 8 10 126 9 42 22 18 0 36 0 1 5 60 1 56 12 13 123 chain 3462 chr3 198295559 + 1654607 1654645 L1P2 5180 + 1859 1897 95518 38 chain 193640 chr3 198295559 + 1656820 1658957 L1PA3long 6157 + 4017 6157 9947 169 0 2 1964 0 1 4 chain 169374 chr3 198295559 + 1658985 1661178 L1P2 5180 + 2501 4710 11135 285 0 4 110 0 11 134 0 1 9 21 26 40 1 2 108 7 11 121 7 9 146 13 0 373 0 1 708 0 1 70 2 1 38 chain 529010 chr3 198295559 + 1681684 1687783 L1PA4 6152 + 25 6143 1879 2755 1 7 51 0 1 670 1 0 179 1 0 232 0 1 967 0 1 118 0 14 545 1 0 252 2 1 324 chain 66500 chr3 198295559 + 1706355 1707213 L1PA7 6471 + 5595 6457 24822 26 0 3 688 5 6 41 3 0 5 0 3 90 chain 11737 chr3 198295559 + 1752496 1752728 MER50 708 + 452 686 67338 32 1 0 8 26 27 23 0 4 8 4 0 82 4 5 19 7 8 18 chain 34278 chr3 198295559 + 1865402 1865849 L1PA8 5853 + 5413 5853 38508 151 1 0 45 2 0 66 9 8 5 1 0 55 1 0 17 1 0 93 chain 12694 chr3 198295559 + 1888554 1888787 LTR10B1 532 + 243 480 65633 122 64 68 47 chain 16676 chr3 198295559 + 1892714 1892965 L1MA2 4263 + 3850 4094 60179 106 11 9 50 0 1 42 7 0 11 1 2 23 chain 427171 chr3 198295559 + 1921331 1926923 HERVL-int 5654 + 0 5323 4786 40 1 0 375 6 8 39 311 0 408 20 25 223 0 3 266 0 3 225 5 4 105 0 2 166 11 1 1045 5 6 66 1 0 89 0 6 497 2 0 79 0 1 342 1 2 4 1 0 11 0 1 248 14 39 590 0 5 168 6 8 125 0 1 97 chain 380548 chr3 198295559 + 1930004 1938216 L1PA7 6471 + 671 6459 5471 9 0 47 187 0 6 273 6 876 33 0 2 19 2 0 10 0 1 211 0 10 277 2 0 6 6 9 449 0 4 262 0 2 128 8 5 26 1 0 251 0 1 92 5 0 33 1 0 31 0 1 77 1 0 616 3359 0 236 5 4 72 0 1 6 5 0 72 1 2 80 0 1 528 0 2 55 6 9 443 0 1 84 0 1 91 3 0 6 0 2 138 chain 140051 chr3 198295559 + 1933052 1934852 L1PA7 6471 + 4629 6467 13092 40 5 9 86 0 3 23 0 4 9 0 2 60 0 6 709 0 7 15 0 4 8 0 3 175 25 29 63 0 1 582 chain 34751 chr3 198295559 + 1934858 1935275 L1PA7 6471 + 2668 3086 38187 9 0 2 43 5 4 360 chain 49052 chr3 198295559 + 1935285 1935902 L1PA7 6471 + 3100 3718 29929 268 1 0 131 1 2 110 0 1 106 chain 39543 chr3 198295559 + 1935902 1936384 L1PA7 6471 + 4137 4625 34761 137 0 2 228 0 4 117 chain 3444 chr3 198295559 + 1970197 1970238 MER3 215 + 79 120 95697 41 chain 177723 chr3 198295559 + 1975571 1978028 L1PA10 4194 + 349 4150 10693 7 1 0 7 1 0 11 1 0 8 5 0 11 8 1 9 1 0 85 3 0 130 16 7 141 28 50 272 2 0 74 1 3 346 3 0 7 22 31 153 0 2 161 7 6 149 10 1369 225 0 1 119 0 2 287 9 0 59 4 0 23 18 11 26 0 1 7 chain 150737 chr3 198295559 + 2006905 2008507 L1HS 6032 + 4430 6032 12303 1602 chain 129390 chr3 198295559 + 2083450 2085084 LTR12C 1709 + 0 1709 14105 17 0 1 263 1 6 442 44 0 45 1 2 4 1 0 56 2 1 11 4 0 33 0 1 51 1 2 4 1 0 69 4 0 34 0 1 69 10 7 92 0 21 175 0 102 200 chain 2726 chr3 198295559 + 2084173 2084217 LTR12C 1709 + 847 888 52857 1 4 0 33 0 1 6 chain 56799 chr3 198295559 + 2163100 2163955 L1PB2 3958 + 2818 3665 27325 106 1 0 202 5 6 138 0 1 36 2 0 27 2 0 25 13 16 50 15 13 13 4 0 48 42 41 77 1 0 48 chain 20051 chr3 198295559 + 2192446 2192665 L1PA5 6144 + 5143 5362 56312 219 chain 107822 chr3 198295559 + 2255273 2256628 L1P3 4156 + 2792 4139 17348 235 20 16 40 10 11 176 4 3 220 2 1 613 2 0 7 3 2 23 chain 3336 chr3 198295559 + 2261084 2261125 MER127 228 + 121 162 96723 41 chain 22491 chr3 198295559 + 2342478 2342849 THE1C 375 + 0 375 53131 40 0 5 117 41 42 25 21 20 97 1 0 29 chain 3413 chr3 198295559 + 2343404 2343455 MER51A 677 + 178 220 95977 21 9 0 21 chain 3016 chr3 198295559 + 2353262 2353295 LTR12C 1709 + 683 716 99684 33 chain 36823 chr3 198295559 + 2479330 2479786 LTR71A 459 + 0 459 36868 38 0 3 418 chain 20156 chr3 198295559 + 2485383 2485718 LTR12C 1709 + 773 1197 56186 60 0 40 157 0 88 42 59 20 17 chain 4001 chr3 198295559 + 2485655 2485701 LTR12C 1709 + 690 736 91450 46 chain 27802 chr3 198295559 + 2545849 2546382 L1PA15 4387 + 3852 4366 45178 38 18 13 30 6 5 96 1 0 64 7 6 27 12 11 43 1 0 4 21 28 50 6 3 44 3 1 12 15 5 24 1 0 10 chain 70424 chr3 198295559 + 2550293 2551111 L1PA7 6471 + 5653 6469 23887 660 1 0 6 2 1 149 chain 21962 chr3 198295559 + 2592397 2592721 THE1B 368 + 0 322 53895 13 2 0 27 0 5 77 1 0 50 2 1 29 2 0 22 12 11 87 chain 84044 chr3 198295559 + 2601747 2602710 L1PA5 6144 + 3636 4603 20796 708 0 4 255 chain 59944 chr3 198295559 + 2616689 2617418 L1PA8A 6298 + 4878 5610 26390 610 0 3 119 chain 21487 chr3 198295559 + 2621396 2621653 L1PA7 6471 + 6216 6466 54527 63 8 1 186 chain 38000 chr3 198295559 + 2635704 2636180 LOR1a 498 + 0 482 36073 104 0 6 372 chain 3502 chr3 198295559 + 2701796 2701863 MADE1 96 + 5 87 95231 40 0 15 27 chain 73554 chr3 198295559 + 2815050 2816068 L1PB1 5432 + 4279 5281 23206 105 0 1 39 2 0 202 4 0 13 1 0 69 0 1 95 3 11 288 7 0 14 3 0 32 18 13 5 2 0 53 2 1 16 1 0 44 chain 282010 chr3 198295559 + 3044633 3047954 L1P1 4361 + 4 3308 7374 276 6 0 77 24 3 73 1 0 36 9 11 53 5 11 571 0 1 1064 0 1 14 0 2 110 1 0 1001 chain 15037 chr3 198295559 + 3050948 3051172 MER30 238 + 0 238 62218 93 9 33 6 4 0 7 3 0 53 3 0 46 chain 115543 chr3 198295559 + 3131462 3132695 L1HS 6032 + 4799 6032 16304 1233 chain 6067 chr3 198295559 + 3177036 3177145 MER20 218 + 93 208 80843 56 14 17 22 4 7 13 chain 4633 chr3 198295559 + 3193499 3193562 MER41B 635 + 481 545 87631 29 1 2 33 chain 25369 chr3 198295559 + 3233723 3234126 MLT2A1 477 + 0 477 48668 58 0 1 79 0 1 30 1 5 36 0 1 37 0 1 41 20 94 13 29 25 14 3 0 22 1 0 19 chain 74465 chr3 198295559 + 3291337 3292420 MER11A 1151 + 0 1151 22970 55 0 99 74 1 0 60 9 6 33 0 2 105 9 10 94 0 1 144 5 7 120 0 26 26 44 1 19 19 1 37 0 1 60 6 7 163 chain 43623 chr3 198295559 + 3347140 3347666 MLT2A2 560 + 0 529 32369 13 0 1 189 0 1 285 0 1 39 chain 39221 chr3 198295559 + 3406870 3407364 L1PBa 3878 + 1626 2133 35201 149 0 13 345 chain 496519 chr3 198295559 + 3407375 3413477 L1PA7 6471 + 5 6455 3248 93 19 94 49 0 8 137 17 18 32 0 16 90 3 4 70 1 0 594 0 4 634 1 3 110 0 2 59 0 1 35 2 233 109 5 6 103 0 1 129 0 2 245 3 0 207 3 7 102 3 1 801 4 0 132 0 1 537 0 2 282 0 5 217 0 1 408 4 5 27 1 0 834 chain 141731 chr3 198295559 + 3414614 3416740 L1PB1 5432 + 3326 5422 12958 160 14 18 89 0 3 7 7 0 133 13 1 39 4 5 205 0 1 36 7 6 135 0 1 5 1 0 459 1 0 77 1 2 76 41 54 265 1 0 11 1 0 24 8 6 10 9 5 9 2 0 9 0 1 41 1 0 18 1 0 44 1 0 15 24 12 18 3 1 4 1 0 15 2 0 24 1 0 22 1 0 11 2 1 18 chain 237640 chr3 198295559 + 3480112 3482743 L1PA3long 6157 + 3523 6156 8531 891 0 1 713 0 1 1027 chain 48931 chr3 198295559 + 3591143 3591866 L1PA13 3608 + 2782 3497 29972 20 7 8 179 0 1 142 1 0 28 1 0 75 1 2 27 13 11 61 1 0 55 2 0 5 2 0 38 6 3 4 0 1 6 2 0 13 6 5 22 0 3 6 chain 37838 chr3 198295559 + 3646530 3646988 LTR2 463 + 0 463 36178 129 8 11 214 0 1 98 0 1 9 chain 157335 chr3 198295559 + 3672795 3674542 L1PA2 6032 + 2835 4579 11923 1000 0 2 205 13 8 529 chain 25694 chr3 198295559 + 3688616 3688970 THE1A 353 + 0 353 48183 15 2 0 32 0 1 48 1 0 11 17 18 228 chain 544921 chr3 198295559 + 3719386 3725382 L1PA2 6032 + 2 6032 1035 695 0 7 416 1 0 682 0 1 810 0 1 99 0 4 2201 0 12 1032 0 10 60 chain 3635 chr3 198295559 + 3781638 3781678 MADE1 96 + 56 96 94136 40 chain 20382 chr3 198295559 + 3793349 3793701 THE1B 368 + 10 368 55907 101 4 6 60 63 68 61 7 6 56 chain 272644 chr3 198295559 + 3865432 3868613 L1PA5 6144 + 2689 5877 7639 513 2 1 242 0 1 223 4 1 373 3 8 286 0 4 919 6 7 610 chain 178146 chr3 198295559 + 3897140 3899108 L1PA3long 6157 + 1967 3937 10671 870 0 2 1098 chain 5043 chr3 198295559 + 3899224 3899316 MER53 195 - 95 195 85454 24 2 0 39 0 7 6 8 11 13 chain 21841 chr3 198295559 + 3906434 3906778 THE1A 353 + 0 353 54050 80 4 5 24 2 1 9 21 22 33 0 1 17 0 2 84 1 0 38 6 12 25 chain 504 chr3 198295559 + 3908588 3908773 MLT2A1 477 + 2 194 58618 42 5 7 87 0 1 23 7 11 21 chain 475690 chr3 198295559 + 3909361 3914942 L1PA4 6152 + 580 6151 3731 103 5 0 151 17 0 308 1 7 2035 0 1 322 0 1 168 4 1 263 0 1 436 3 1 286 0 1 636 0 1 500 0 2 121 2 0 203 0 6 17 chain 616 chr3 198295559 + 3914979 3915205 MLT2A1 477 + 212 477 58618 173 3 43 30 1 0 19 chain 10725 chr3 198295559 + 3949656 3949962 L1MC1 2226 + 1742 2047 69000 67 111 115 31 28 25 13 2 0 54 chain 563655 chr3 198295559 + 3963076 3969110 L1HS 6032 + 2 6032 121 556 1 0 4386 3 0 1088 chain 114527 chr3 198295559 + 3996513 3997903 L1PA7 6471 + 2862 4282 16470 260 3 0 360 13 4 353 1 3 299 0 34 37 0 6 64 chain 140562 chr3 198295559 + 4026383 4027874 L1HS 6032 + 3457 4948 13054 1491 chain 4009 chr3 198295559 + 4027878 4027958 MER33 330 + 211 290 91382 35 18 17 27 chain 59641 chr3 198295559 + 4069636 4070383 MER4E 760 + 0 760 26476 23 0 1 79 0 5 56 0 1 184 0 3 9 0 2 324 0 1 72 chain 492650 chr3 198295559 + 4071178 4077810 L1PA6 6164 + 0 6159 3354 177 18 20 160 23 0 3 5 0 26 0 1 62 19 0 115 20 0 5 56 0 38 0 2 83 0 1 48 21 0 46 0 17 92 38 1 549 1 0 884 2 0 949 0 2 199 10 5 218 1 0 102 0 3 114 14 15 77 1 3 356 0 2 270 2 0 221 0 1 66 3 0 49 1 0 372 328 17 788 chain 54371 chr3 198295559 + 4110391 4111003 L1PA5 6144 + 5532 6143 28092 500 1 0 111 chain 32411 chr3 198295559 + 4127290 4127739 MLT2A1 477 + 0 477 40033 168 5 2 9 0 1 24 0 1 180 15 0 8 3 47 37 chain 455333 chr3 198295559 + 4127739 4133414 HERVL-int 5654 + 0 5654 4251 442 6 8 113 4 3 4 0 1 73 0 1 8 1 0 217 25 30 59 37 2 733 2 1 219 0 1 22 0 1 5 2 1 339 0 1 55 2 1 705 0 1 126 7 9 625 9 4 155 5 7 403 6 0 522 0 6 427 0 1 81 0 1 137 0 5 99 chain 32103 chr3 198295559 + 4133414 4133860 MLT2A1 477 + 0 477 40272 166 7 4 5 2 0 5 0 3 21 0 1 180 4 0 12 5 41 39 chain 314941 chr3 198295559 + 4134003 4137627 L1PA5 6144 + 2515 6139 6509 587 5 2 583 2 1 416 1 0 696 1 6 1333 chain 57776 chr3 198295559 + 4173315 4174008 L1PA7 6471 + 5745 6440 27026 178 0 1 386 1 2 128 chain 513804 chr3 198295559 + 4174566 4180684 L1PA6 6164 + 0 6146 2580 84 0 1 152 0 2 278 0 2 48 1 0 231 1 19 255 10 12 40 0 1 300 3 4 897 1 2 1548 0 1 688 1 7 469 7 0 875 0 1 229 chain 29861 chr3 198295559 + 4205014 4205434 LTR7B 505 + 0 495 42171 90 0 3 15 0 10 42 0 1 22 6 68 5 1 0 22 0 2 82 2 0 26 0 1 52 14 13 41 chain 4552 chr3 198295559 + 4211213 4211267 MLT2A2 560 + 506 560 88057 54 chain 466487 chr3 198295559 + 4211801 4217510 L1PA7 6471 + 666 6456 3948 55 27 32 97 0 1 400 0 19 127 0 3 1120 0 2 117 0 2 341 2 3 256 0 2 64 7 8 206 0 1 49 0 10 256 5 4 251 5 6 178 5 7 202 0 1 182 0 4 871 0 24 47 0 3 839 chain 552853 chr3 198295559 + 4253248 4259268 L1PA2 6032 + 0 6024 554 558 1 0 563 1 0 2364 0 6 2533 chain 73981 chr3 198295559 + 4267565 4268435 L1PA3long 6157 + 5326 6149 23098 730 47 0 93 chain 103639 chr3 198295559 + 4316072 4317322 HSMAR1 1287 + 23 1287 17858 53 0 4 33 1 5 41 1 6 1049 6 7 66 chain 437786 chr3 198295559 + 4344278 4349944 L1PA8A 6298 + 905 6290 4607 42 0 3 143 0 4 41 1 3 69 0 4 15 0 1 26 4 0 81 0 3 288 1 0 228 0 1 725 0 8 751 2 0 12 1 2 5 2 0 12 7 6 31 5 6 60 1 0 403 0 1 192 0 1 293 0 1 129 1 0 146 0 6 577 323 0 265 2 1 49 0 5 64 0 13 669 chain 13040 chr3 198295559 + 4381204 4381473 L1PB1 5432 + 5172 5420 65044 48 2 1 15 1 0 44 1 0 16 1 0 6 64 50 20 1 0 19 2 1 12 1 0 16 chain 47280 chr3 198295559 + 4382506 4383062 L1PA7 6471 + 5896 6452 30546 556 chain 16333 chr3 198295559 + 4423081 4423277 L1PB1 5432 + 4902 5103 60591 79 0 5 117 chain 3795 chr3 198295559 + 4739484 4739529 MER2 342 + 22 67 92880 45 chain 7134 chr3 198295559 + 4852556 4852641 LTR39 781 + 48 133 77155 85 chain 55813 chr3 198295559 + 4877679 4878292 L1PA3long 6157 + 5544 6157 27622 613 chain 562403 chr3 198295559 + 4916534 4922575 L1HS 6032 + 0 6032 136 558 1 0 5467 8 0 7 chain 512549 chr3 198295559 + 4965765 4971902 L1PA4 6152 + 15 6143 2641 105 32 46 793 25 0 218 10 1 237 5 6 667 0 10 157 0 1 64 2 1 43 4 0 922 1 0 329 0 1 307 1 0 1411 0 1 602 0 3 98 0 1 104 chain 24792 chr3 198295559 + 5047729 5048054 THE1C 375 + 9 336 49599 176 8 10 141 chain 125775 chr3 198295559 + 5243810 5245277 L1PA7 6471 + 4992 6461 14589 622 1 0 84 0 2 183 0 1 577 chain 29344 chr3 198295559 + 5273603 5274053 MLT2A2 560 + 1 560 42819 54 1 0 43 2 0 85 45 44 75 3 112 114 0 4 28 chain 158228 chr3 198295559 + 5328215 5330001 L1PA5 6144 + 3688 5477 11859 58 0 1 227 0 2 269 1 0 4 1 2 1226 chain 7316 chr3 198295559 + 5332443 5332555 L1MB3 1562 + 1440 1552 76613 26 4 5 52 1 0 29 chain 70759 chr3 198295559 + 5376541 5377480 L1PA6 6164 + 6 951 23813 389 21 20 34 8 0 120 1 0 24 1 0 209 1 18 131 chain 516079 chr3 198295559 + 5412223 5418907 L1PA7 6471 + 0 6470 2466 316 0 1 85 5 6 377 0 1 64 0 1 359 0 4 803 0 1 131 299 0 11 0 4 165 9 1 167 5 4 91 0 5 40 1 2 250 0 4 167 1 4 86 0 62 41 0 1 338 0 1 7 7 6 103 0 3 32 5 4 252 1 0 8 0 2 195 7 8 359 1 0 4 1 2 226 0 2 316 2 1 81 1 0 68 0 1 348 0 3 446 0 1 65 0 1 299 0 2 23 7 0 9 chain 214973 chr3 198295559 + 5512066 5515235 L1PA8A 6298 + 3505 6291 9175 127 88 0 24 1 0 133 5 6 76 0 1 254 0 1 43 0 1 8 0 5 170 0 2 79 320 0 136 0 8 65 0 3 15 0 1 69 0 3 257 5 5 235 0 1 256 7 6 82 7 10 561 4 0 28 1 0 7 0 1 5 25 26 76 chain 8452 chr3 198295559 + 5577941 5578044 MLT1A0 366 + 261 364 73794 103 chain 183934 chr3 198295559 + 5585701 5587792 L1PA5 6144 + 4018 6126 10387 324 0 8 307 5 8 631 0 6 824 chain 48300 chr3 198295559 + 5646135 5646787 PABL_B 668 + 0 668 30181 281 2 1 149 0 3 14 0 2 14 3 14 12 10 11 167 chain 2821 chr3 198295559 + 5661480 5661515 MER5A 189 + 36 72 101515 15 0 1 20 chain 37606 chr3 198295559 + 5680283 5680795 L1PA8 5853 + 5344 5849 36333 89 1 0 5 5 6 120 1 0 44 2 0 70 2 1 8 2 1 52 2 1 19 1 0 89 chain 36615 chr3 198295559 + 5719761 5720176 L1PA7 6471 + 6050 6465 37006 415 chain 16862 chr3 198295559 + 5755701 5755947 L1PA6 6164 + 5924 6162 59957 68 33 28 131 3 0 11 chain 31223 chr3 198295559 + 5803584 5803938 L1PA4 6152 + 3828 4182 40951 354 chain 5356 chr3 198295559 + 5874510 5874591 Tigger1 2417 + 2280 2356 83931 48 13 8 20 chain 16333 chr3 198295559 + 5904506 5904884 L1PB1 5432 + 5073 5420 60590 30 7 6 5 1 0 24 1 0 9 1 0 9 2 0 3 2 0 8 2 0 50 3 2 18 1 0 44 1 0 15 1 0 6 64 50 18 1 0 19 4 3 12 5 4 12 chain 7295 chr3 198295559 + 5928412 5928501 Tigger3c 601 + 344 433 76685 89 chain 279219 chr3 198295559 + 5935700 5938862 L1PA4 6152 + 2011 5175 7446 725 0 1 778 1 2 600 1 0 121 6 7 930 chain 6261 chr3 198295559 + 5954382 5954455 L1PREC2 3366 + 2644 2717 80123 73 chain 36067 chr3 198295559 + 5957212 5957725 MLT2A2 560 + 0 560 37370 180 1 0 128 6 38 54 1 12 90 14 19 39 chain 36121 chr3 198295559 + 5991214 5991681 L1PA8 5853 + 5392 5852 37329 172 1 0 44 2 0 71 1 0 5 5 4 52 2 1 19 1 0 92 chain 4206 chr3 198295559 + 6009002 6009089 MLT2A1 477 + 415 477 90084 20 24 0 23 2 1 18 chain 458163 chr3 198295559 + 6009249 6015873 HERVL-int 5654 + 0 5654 4177 248 3 1 206 0 1 415 4 11 459 12 0 5 1 3 192 0 1 355 3 0 8 1 0 165 0 9 213 4 7 390 0 13 115 0 4 290 0 1 119 2 1 493 998 0 250 0 2 177 1 0 314 0 2 287 6 0 525 0 1 67 0 6 20 1 2 52 4 5 219 chain 52593 chr3 198295559 + 6012958 6013906 MER11B 1079 + 0 1045 28703 55 0 91 74 0 5 133 0 5 42 0 6 43 21 20 22 24 12 15 0 1 81 94 101 12 1 0 20 93 88 53 0 1 165 chain 8046 chr3 198295559 + 6028065 6028163 L1P3 4156 + 3010 3108 74760 98 chain 53026 chr3 198295559 + 6066739 6067431 LTR30 714 + 0 704 28569 249 0 5 189 7 18 158 2 0 10 25 24 39 1 0 12 chain 3435 chr3 198295559 + 6108313 6108351 U3 216 + 0 38 95773 38 chain 26080 chr3 198295559 + 6175819 6176136 L1P1 4361 + 4027 4341 47606 124 1 0 154 1 0 23 2 1 12 chain 12021 chr3 198295559 + 6273047 6273241 Tigger4 2445 + 2112 2306 66816 79 12 15 9 1 0 50 7 6 12 1 0 23 chain 221806 chr3 198295559 + 6318322 6320913 L1PA3long 6157 + 3719 6157 8986 337 167 9 1245 0 4 835 0 1 7 chain 24894 chr3 198295559 + 6330470 6330823 THE1B 368 + 0 367 49445 172 1 0 25 31 46 124 chain 35007 chr3 198295559 + 6330824 6331316 THE1B-int 1605 + 0 523 38015 12 4 6 231 7 6 31 6 8 43 0 1 94 3 28 5 0 2 56 chain 27169 chr3 198295559 + 6340440 6340727 AluYd8 298 + 0 287 46014 287 chain 547646 chr3 198295559 + 6340819 6346935 L1PA3long 6157 + 0 6157 886 6 2 0 147 0 1 101 0 1 439 0 7 1994 0 1 287 0 4 263 1 5 1162 0 1 333 0 1 557 0 4 781 0 19 43 chain 116052 chr3 198295559 + 6363029 6364717 L1PA8 5853 + 4225 5848 16225 22 7 10 113 8 7 131 0 5 9 6 1 53 0 1 305 60 1 127 3 1 553 2 1 43 2 0 62 46 43 13 0 1 9 8 7 17 2 1 87 chain 49794 chr3 198295559 + 6373081 6373650 L1PA5 6144 + 5563 6132 29640 569 chain 32446 chr3 198295559 + 6397586 6398040 LTR7 482 + 0 482 39994 169 0 11 44 5 37 120 17 1 29 21 22 49 chain 296572 chr3 198295559 + 6398042 6401717 HERVH-int 3825 + 0 3825 6934 380 0 2 148 1 0 11 1 0 4 0 1 24 1 0 10 1 0 11 4 0 12 49 1 15 1 0 11 22 19 53 1 0 77 0 1 355 0 1 90 15 0 232 0 2 10 1 0 309 0 1 220 0 4 111 0 1 954 9 11 39 8 218 254 6 8 225 chain 22194 chr3 198295559 + 6406960 6407276 LTR12 884 + 0 365 53569 25 1 0 52 1 67 192 24 8 21 chain 112528 chr3 198295559 + 6497247 6498511 L1PA4 6152 + 3905 5175 16746 787 0 1 460 0 5 17 chain 34038 chr3 198295559 + 6518763 6519188 LTR10B 488 + 12 431 38679 97 7 1 321 chain 39861 chr3 198295559 + 6547960 6548392 L1PA2 6032 + 4235 4667 34767 432 chain 395940 chr3 198295559 + 6588325 6592875 L1PA5 6144 + 1541 6126 5216 773 0 1 67 0 1 115 0 1 140 11 0 2257 0 1 578 0 19 96 0 1 491 0 22 22 chain 93821 chr3 198295559 + 6673171 6674398 HSMAR1 1287 + 12 1252 19064 624 24 37 480 1 3 21 2 0 75 chain 23237 chr3 198295559 + 6704908 6705360 L1PA15 4387 + 3890 4330 52026 22 0 1 18 4 3 76 22 15 79 1 0 26 14 22 33 1 0 23 14 9 26 30 27 44 3 1 8 1 0 7 chain 20118 chr3 198295559 + 6708994 6709304 L1PB3 3668 + 2728 3030 56238 161 6 11 65 7 5 18 2 0 10 9 0 32 chain 4595 chr3 198295559 + 6730627 6730704 MER2 342 + 251 329 87813 37 14 15 26 chain 19588 chr3 198295559 + 6829505 6829712 L1PA2 6032 + 5818 6025 56913 207 chain 15978 chr3 198295559 + 6886291 6886496 L1PA6 6164 + 5959 6156 61052 33 8 0 164 chain 3861 chr3 198295559 + 6979726 6979772 MADE1 96 + 3 49 92405 46 chain 6443 chr3 198295559 + 7014879 7015326 LTR12 884 + 313 736 79535 25 160 17 23 153 272 37 14 14 35 chain 6115 chr3 198295559 + 7020220 7020378 L1MC1 2226 + 1933 2079 80678 26 24 21 16 2 0 43 31 24 16 chain 7648 chr3 198295559 + 7061986 7062074 HERVK-int 6823 + 5372 5460 75753 88 chain 98074 chr3 198295559 + 7066224 7067549 L1PB 1623 + 98 1413 18520 4 1 0 10 1 0 5 1 0 9 0 4 39 4 1 18 7 4 77 1 0 127 1 0 17 3 0 50 0 3 21 1 0 42 5 6 31 1 0 99 0 1 202 0 1 75 0 1 179 10 11 101 14 13 59 5 0 105 chain 81048 chr3 198295559 + 7076764 7077730 L1PA7 6471 + 5493 6468 21425 109 0 4 13 1 5 537 0 1 306 chain 10260 chr3 198295559 + 7240823 7240982 Tigger3a 397 + 55 273 69879 20 24 83 115 chain 53235 chr3 198295559 + 7289414 7290018 L1PA5 6144 + 5540 6144 28492 604 chain 3028 chr3 198295559 + 7376732 7376768 MER58A 224 + 172 208 99532 36 chain 39823 chr3 198295559 + 7391262 7391718 L1PA5 6144 + 5687 6143 34798 456 chain 3579 chr3 198295559 + 7439436 7439580 LTR40b 463 + 307 456 94596 16 67 71 22 13 14 26 chain 106680 chr3 198295559 + 7524115 7525275 L1PA3long 6157 + 4997 6157 17473 1160 chain 58963 chr3 198295559 + 7532763 7533508 L1PA7 6471 + 2592 3318 26676 40 10 0 63 8 0 20 4 0 138 0 4 413 1 0 48 chain 119412 chr3 198295559 + 7568424 7569972 LTR12C 1709 + 0 1709 15626 20 0 9 210 2 3 18 0 1 163 0 1 34 3 6 61 1 0 78 0 1 57 4 119 56 1 0 130 0 41 104 1 0 5 3 1 106 11 4 32 0 2 201 1 2 93 1 0 69 1 0 82 chain 2923 chr3 198295559 + 7660545 7660582 L1ME1 1623 + 255 294 100653 32 0 2 5 chain 33734 chr3 198295559 + 7756713 7757156 LTR10F 562 + 0 531 38894 16 0 1 92 0 56 65 0 24 12 5 11 104 0 1 149 chain 85575 chr3 198295559 + 7761156 7762195 MER11B 1079 + 0 1042 20523 316 1 18 155 1 0 5 18 0 272 5 7 45 0 3 221 chain 194712 chr3 198295559 + 7783461 7785696 L1PA4 6152 + 3914 6152 9899 583 7 11 127 1 0 1057 1 0 398 17 18 44 chain 12611 chr3 198295559 + 7785894 7786072 MER30 238 + 42 232 65785 61 9 15 33 1 7 74 chain 44837 chr3 198295559 + 7860408 7860946 L1PA8A 6298 + 5750 6289 31673 369 0 1 22 0 2 8 2 0 137 chain 497452 chr3 198295559 + 7934191 7940364 L1PA6 6164 + 0 6160 3222 187 0 1 701 6 7 33 0 1 216 0 2 63 10 11 228 1 0 159 30 4 28 0 1 316 1 0 223 0 1 24 10 3 59 2 0 64 0 2 229 0 1 613 7 0 8 5 17 67 4 0 7 0 9 404 66 12 50 0 3 224 0 1 386 0 4 57 0 16 201 1 0 341 1 8 55 1 2 241 0 3 16 1 0 6 1 0 385 0 6 188 0 19 247 chain 88043 chr3 198295559 + 7941675 7942697 LTR5A 1029 + 0 1029 20039 19 0 2 126 1 0 732 0 6 144 chain 372503 chr3 198295559 + 8041361 8046918 L1PB1 5432 + 19 5430 5612 29 11 10 279 0 5 54 13 13 125 12 14 53 2 1 5 0 1 116 26 20 11 0 6 453 14 14 36 15 17 114 1 0 7 68 50 85 0 4 147 0 1 18 1 2 35 0 1 136 0 5 196 1 100 8 1 0 5 0 1 62 18 24 217 0 1 24 0 4 308 4 0 6 1 0 101 54 43 175 0 2 200 0 2 368 0 3 17 0 4 192 13 16 103 0 1 316 3 0 105 4 8 10 0 7 28 0 1 82 3 0 105 0 1 73 1 3 217 0 3 21 6 11 43 302 55 11 2 0 51 2 1 16 1 0 44 1 0 15 3 0 7 44 33 10 2 0 24 1 0 17 5 4 13 1 0 16 1 0 4 1 0 6 chain 171135 chr3 198295559 + 8062037 8063945 L1PA4 6152 + 3446 5354 11043 1908 chain 4259 chr3 198295559 + 8085577 8085625 MER63A 208 + 119 167 89766 48 chain 26513 chr3 198295559 + 8113869 8114282 LTR7 482 + 0 482 46959 66 32 20 15 16 15 16 2 53 39 5 37 28 0 1 22 2 0 170 chain 31420 chr3 198295559 + 8177030 8177441 LTR7 482 + 0 482 40798 69 8 46 109 0 1 33 5 37 187 chain 292684 chr3 198295559 + 8177443 8181048 HERVH-int 3825 + 0 3825 7053 212 0 11 171 0 9 96 0 4 27 1 0 11 1 0 4 0 1 24 1 0 10 1 0 7 0 1 2 5 0 13 7 1 14 1 38 41 1 0 20 44 0 3 20 0 9 2 1 49 1 0 401 0 2 44 15 0 459 4 31 299 0 10 90 0 1 954 9 11 39 8 218 260 0 2 225 chain 32056 chr3 198295559 + 8182305 8182716 LTR7 482 + 0 482 40305 69 8 46 109 0 1 33 0 1 4 1 32 187 chain 35106 chr3 198295559 + 8277500 8277974 MER4A1 472 + 0 472 37953 110 1 0 93 1 0 66 0 4 6 4 1 96 6 5 91 chain 22447 chr3 198295559 + 8325921 8326244 SVA_C 1631 + 792 1292 53204 20 0 82 36 1 5 8 0 87 41 8 9 87 4 6 7 2 0 53 0 3 56 chain 145691 chr3 198295559 + 8334284 8336520 L1PA3long 6157 + 3947 6149 12636 362 27 0 234 4 0 1460 7 0 19 3 6 9 0 1 9 0 3 5 8 5 89 chain 32692 chr3 198295559 + 8341894 8342322 LTR71A 459 + 0 438 39769 169 0 8 23 0 1 159 1 0 4 0 1 11 11 12 50 chain 33891 chr3 198295559 + 8356168 8356643 MLT2A2 560 + 21 543 38793 159 1 0 126 1 33 19 6 5 36 18 35 109 chain 502358 chr3 198295559 + 8371834 8378046 L1PA7 6471 + 19 6466 3047 177 1 2 39 30 39 124 0 200 142 0 5 505 24 42 297 0 1 55 0 1 115 0 1 1221 0 1 225 0 1 59 0 6 244 0 2 6 1 2 787 0 2 48 3 2 217 0 1 19 0 2 124 0 1 79 0 4 132 1 0 15 24 15 635 1 0 88 2 0 5 5 7 144 11 1 39 0 1 421 1 3 4 1 0 132 2 0 7 chain 27564 chr3 198295559 + 8378121 8378494 MLT2A1 477 + 7 383 45495 59 0 2 40 9 10 50 6 4 7 0 1 24 0 1 178 chain 188991 chr3 198295559 + 8390369 8392425 L1PA3long 6157 + 4101 6157 10163 2056 chain 7255 chr3 198295559 + 8395691 8395889 L1PB3 3668 + 3442 3614 76803 33 21 7 18 1 0 3 1 0 25 12 10 28 7 3 11 7 6 10 6 3 15 chain 162465 chr3 198295559 + 8439017 8441246 SVA_D 2077 + 0 2075 11581 650 258 17 23 2 0 125 0 40 56 10 96 27 19 21 171 49 0 82 0 49 27 28 4 13 4 0 664 11 0 10 chain 11999 chr3 198295559 + 8439667 8439823 SVA_D 2077 + 454 646 64607 40 12 48 104 chain 1731 chr3 198295559 + 8439823 8439866 SVA_D 2077 + 762 842 67437 4 11 48 28 chain 4896 chr3 198295559 + 8439866 8439925 SVA_D 2077 + 569 628 59878 59 chain 2829 chr3 198295559 + 8440358 8440407 SVA_D 2077 + 1050 1099 39194 49 chain 29947 chr3 198295559 + 8448338 8448674 L1PA3long 6157 + 5823 6157 42102 187 2 0 147 chain 22170 chr3 198295559 + 8457586 8457845 AluYk4 311 + 41 300 53610 259 chain 5520 chr3 198295559 + 8478353 8478422 MADE1 96 + 0 96 83152 40 0 27 29 chain 11859 chr3 198295559 + 8540044 8540180 L1PA5 6144 + 5797 5933 67096 136 chain 24471 chr3 198295559 + 8602725 8603078 THE1A 353 + 0 353 50076 15 2 0 4 0 1 25 9 10 35 5 4 14 4 5 240 chain 13579 chr3 198295559 + 8609958 8610289 THE1B 368 + 0 341 64198 11 2 0 32 78 86 40 1 0 16 50 55 101 chain 540209 chr3 198295559 + 8611524 8617533 L1PA3long 6157 + 1 6157 1327 5 3 0 146 0 1 174 0 13 354 0 8 74 0 128 677 0 3 338 0 5 1335 0 1 434 0 2 468 0 1 595 17 6 1314 1 0 74 chain 9839 chr3 198295559 + 8670131 8670248 HERVE-int 4064 + 0 117 70741 117 chain 327455 chr3 198295559 + 8673355 8683817 HERVE-int 4064 + 0 4064 6258 287 7 0 47 5 0 192 0 4 281 3 0 240 1 0 43 5 6 433 1 2 643 4218 0 31 2189 0 886 2 1 300 0 10 71 1 0 79 5 14 145 70 70 90 0 2 187 chain 43938 chr3 198295559 + 8675578 8676083 HERVE-int 4064 + 2210 2717 32171 26 0 1 378 0 1 101 chain 1447 chr3 198295559 + 8677202 8677295 HERVE-int 4064 + 2118 2211 30199 93 chain 44929 chr3 198295559 + 8677305 8677807 HERVE-int 4064 + 2215 2717 31617 502 chain 7859 chr3 198295559 + 8679797 8680302 HERVE-int 4064 + 2211 2717 30199 404 0 1 101 chain 7492 chr3 198295559 + 8681887 8681978 HERVE-int 4064 + 2118 2209 76150 91 chain 540919 chr3 198295559 + 8716078 8722089 L1PA3long 6157 + 0 6152 1288 152 0 1 211 0 1 411 0 128 672 5 8 1033 0 1 558 0 1 55 8 12 886 0 1 49 0 1 1971 chain 4644 chr3 198295559 + 8758951 8759106 MER5A1 166 + 0 162 87566 18 69 59 44 6 23 18 chain 23103 chr3 198295559 + 8776028 8776312 AluSc 308 + 10 293 52205 247 1 0 36 chain 3252 chr3 198295559 + 8786015 8786157 MLT1D 503 + 253 404 97460 20 91 100 31 chain 26124 chr3 198295559 + 8796357 8796996 L1PB1 5432 + 4898 5423 47529 75 41 47 83 105 13 18 1 0 13 1 0 9 22 16 5 0 1 58 1 0 45 39 27 19 2 0 5 1 0 14 10 8 16 1 0 22 1 0 12 1 0 19 chain 16913 chr3 198295559 + 8827982 8828325 MER47A 366 + 0 330 59898 14 58 57 15 2 0 67 20 0 11 0 8 27 2 1 95 6 9 26 chain 485331 chr3 198295559 + 8921961 8927435 L1PA4 6152 + 10 5516 3524 446 8 29 558 0 2 1088 0 3 587 0 2 1626 0 4 1161 chain 3800 chr3 198295559 + 9026511 9026592 MADE1 96 - 0 96 92842 23 21 36 37 chain 9354 chr3 198295559 + 9081836 9081976 MLT1A0 366 + 0 139 71803 24 18 17 98 chain 2929 chr3 198295559 + 9084610 9084641 MLT1L 557 + 525 556 100598 31 chain 17690 chr3 198295559 + 9113599 9113909 THE1C 375 + 0 328 59018 49 0 4 34 7 8 13 1 0 5 0 1 62 61 74 78 chain 27539 chr3 198295559 + 9144448 9144802 THE1A 353 + 0 353 45531 110 2 1 71 1 0 143 0 1 27 chain 11839 chr3 198295559 + 9219866 9220038 L1MA4 2864 + 2529 2698 67132 126 22 19 24 chain 29266 chr3 198295559 + 9228779 9229090 AluYb8 318 + 0 310 42942 15 1 0 295 chain 28854 chr3 198295559 + 9236394 9236782 MSTA 426 + 16 405 43551 185 3 0 9 13 19 7 2 0 169 chain 8380 chr3 198295559 + 9237249 9237366 MER20 218 + 29 146 73943 54 3 4 4 1 0 55 chain 541273 chr3 198295559 + 9259856 9266384 L1PA7 6471 + 0 6470 1256 55 0 4 166 15 0 12 11 26 147 0 2 187 0 1 311 51 0 299 0 4 516 0 1 242 25 15 382 0 1 150 0 2 109 13 0 110 0 1 357 0 4 393 3 0 24 1 0 287 0 1 18 0 1 1127 1 0 30 1 0 638 0 4 83 3 1 750 2 0 9 chain 10205 chr3 198295559 + 9268153 9268291 MLT1A 405 + 32 173 70004 89 6 7 36 0 2 7 chain 26227 chr3 198295559 + 9320282 9320703 MSTA 426 + 2 426 47379 19 1 0 7 0 1 8 16 15 90 7 6 57 2 0 33 8 7 47 18 26 108 chain 10504 chr3 198295559 + 9374322 9374449 7SLRNA 320 + 74 201 69414 127 chain 2889 chr3 198295559 + 9541785 9541817 L1MB8 1703 + 613 645 100933 32 chain 76997 chr3 198295559 + 9559358 9560380 SVA_D 2077 + 0 1208 22318 22 4 0 520 0 80 103 47 7 35 12 10 14 21 24 24 41 5 64 0 185 115 chain 1772 chr3 198295559 + 9560160 9560201 SVA_D 2077 + 646 687 61088 41 chain 111197 chr3 198295559 + 9569488 9570736 SVA_C 1631 + 41 1616 16917 126 0 32 447 0 40 31 0 40 42 0 219 13 4 0 585 chain 32300 chr3 198295559 + 9590153 9590652 LTR2B 499 + 0 499 40114 13 2 1 38 22 34 21 1 0 18 8 0 208 20 19 92 1 0 55 chain 5365 chr3 198295559 + 9591008 9591258 LTR8 732 + 0 251 33568 55 1 2 194 chain 72225 chr3 198295559 + 9591321 9592422 SVA_A 1864 + 20 1525 23479 27 5 0 29 3 4 14 0 11 79 2 0 161 1 0 163 0 40 138 41 1 35 3 0 34 8 7 35 47 403 63 1 38 13 4 1 29 0 16 123 3 1 40 chain 6674 chr3 198295559 + 9592639 9592950 LTR8 732 + 251 566 33568 164 0 4 147 chain 10561 chr3 198295559 + 9609582 9609703 Tigger2a 444 + 161 282 69299 121 chain 90352 chr3 198295559 + 9643306 9644375 L1PA6 6164 + 5092 6161 19618 302 0 2 520 0 1 232 3 0 12 chain 22098 chr3 198295559 + 9655922 9656211 AluSc 308 + 0 297 53701 41 9 17 239 chain 4267 chr3 198295559 + 9693303 9693357 MER2 342 + 190 246 89721 5 0 2 49 chain 12580 chr3 198295559 + 9779512 9779648 L1PA5 6144 + 5990 6126 65827 136 chain 4466 chr3 198295559 + 9783251 9783306 L1MB2 1706 + 1639 1694 88520 55 chain 26863 chr3 198295559 + 9858988 9859341 THE1A 353 + 0 353 46453 110 4 3 218 6 7 15 chain 76904 chr3 198295559 + 10052695 10053537 L1PA3long 6157 + 5314 6157 22346 678 0 1 164 chain 9138 chr3 198295559 + 10067381 10067514 L1MA3 4352 + 1741 1877 72262 41 0 1 4 4 5 38 0 1 46 chain 145323 chr3 198295559 + 10069493 10071143 SVA_D 2077 + 66 2077 12665 476 0 40 246 40 0 84 1 0 4 0 138 159 1 0 7 0 225 632 chain 52826 chr3 198295559 + 10071158 10072268 L1MA3 4352 + 3546 4328 28636 308 0 4 122 8 22 53 0 2 33 377 38 107 4 0 25 2 0 22 1 0 6 4 3 24 1 0 13 chain 23802 chr3 198295559 + 10112815 10113114 AluSp 311 + 0 292 51102 128 6 0 153 2 1 10 chain 41205 chr3 198295559 + 10134553 10135111 LTR19B 566 + 0 566 33837 179 22 2 77 0 1 81 0 4 89 0 6 6 10 9 37 0 9 11 0 3 34 0 6 12 chain 6247 chr3 198295559 + 10141171 10141250 U13 108 + 23 108 80183 18 0 6 61 chain 2965 chr3 198295559 + 10154726 10154757 MER21A 919 + 25 56 100231 31 chain 13029 chr3 198295559 + 10212229 10212414 MER30 238 + 37 238 65073 62 11 0 11 2 28 85 0 1 14 chain 26552 chr3 198295559 + 10237525 10237825 AluYk4 311 + 0 301 46895 236 0 1 64 chain 47162 chr3 198295559 + 10245014 10245590 LTR10C 591 + 0 591 30589 101 0 5 29 0 4 188 1 3 136 1 3 66 0 2 54 chain 3314 chr3 198295559 + 10245601 10245695 L1MB8 1703 + 1455 1567 96884 21 23 39 22 10 12 18 chain 24646 chr3 198295559 + 10316734 10317027 AluSp 311 + 15 308 49798 293 chain 5448 chr3 198295559 + 10420985 10421067 MER5A 189 + 16 99 83465 60 1 0 6 1 3 14 chain 6565 chr3 198295559 + 10430529 10430611 Tigger1 2417 - 599 681 79104 82 chain 226492 chr3 198295559 + 10538269 10540879 L1PA5 6144 + 3524 6144 8851 418 0 1 398 0 4 423 0 6 240 1 0 1130 chain 7301 chr3 198295559 + 10543209 10543292 MLT1B 390 + 289 372 76664 83 chain 111951 chr3 198295559 + 10593466 10594711 L1PA5 6144 + 4885 6128 16822 409 2 0 834 chain 93318 chr3 198295559 + 10650016 10651257 THE1B-int 1605 + 0 1605 19142 12 6 8 13 0 2 219 0 1 71 7 0 106 15 40 125 0 1 97 2 10 17 0 331 148 19 20 384 chain 505721 chr3 198295559 + 10657509 10663237 L1PA5 6144 + 391 6135 2941 645 0 2 73 14 14 67 0 1 1573 2 0 890 0 1 608 1 0 808 0 9 1023 0 6 24 chain 2865 chr3 198295559 + 10715861 10715891 MER3 215 - 5 35 101101 30 chain 30190 chr3 198295559 + 10730476 10730879 LTR7 482 + 0 475 41861 69 8 46 109 9 41 121 0 2 87 chain 4178 chr3 198295559 + 10894524 10894594 L1MA8 2339 + 2021 2081 90269 6 5 0 34 5 0 20 chain 18260 chr3 198295559 + 11044324 11044653 MSTB 430 + 23 392 58400 46 0 1 74 11 28 15 16 13 13 40 65 114 chain 11123 chr3 198295559 + 11061843 11062143 LTR12C 1709 + 773 1037 68369 64 42 0 32 76 41 41 18 59 27 chain 3724 chr3 198295559 + 11061993 11062057 LTR12C 1709 + 645 751 75950 4 0 1 33 25 66 2 chain 8676 chr3 198295559 + 11094466 11094797 LTR12C 1709 + 769 1203 73272 35 0 1 4 1 0 19 84 290 64 103 0 21 chain 2916 chr3 198295559 + 11094740 11094772 LTR12C 1709 + 686 718 100706 32 chain 30172 chr3 198295559 + 11104446 11104845 MLT2A2 560 + 0 560 41870 81 0 146 82 0 18 137 8 3 56 0 2 35 chain 3504 chr3 198295559 + 11107661 11107701 MADE1 96 + 55 95 95210 40 chain 61559 chr3 198295559 + 11113474 11114163 L1PA5 6144 + 5442 6132 25967 593 0 1 96 chain 36034 chr3 198295559 + 11131826 11132301 LTR2B 499 + 8 499 37397 6 1 0 60 3 0 27 0 7 9 0 12 175 12 13 182 chain 5851 chr3 198295559 + 11171498 11171579 MER5A1 166 + 50 128 81692 10 3 0 68 chain 4658 chr3 198295559 + 11228418 11228532 MER5B 177 + 71 177 87485 25 24 18 15 2 0 7 6 6 35 chain 11707 chr3 198295559 + 11241383 11241525 LTR12F 595 + 0 143 67387 103 0 1 39 chain 9937 chr3 198295559 + 11267230 11267353 MER41B 635 + 511 635 70559 95 0 1 28 chain 5855 chr3 198295559 + 11270330 11270442 MER92B 628 + 184 298 81672 30 28 29 4 0 1 50 chain 4883 chr3 198295559 + 11361604 11361686 MER53 195 + 88 179 86238 18 8 10 18 0 7 38 chain 8732 chr3 198295559 + 11402051 11402150 MER41E 591 + 0 98 73136 16 1 0 82 chain 12776 chr3 198295559 + 11516208 11516346 L1PA4 6152 + 6013 6151 65477 138 chain 3707 chr3 198295559 + 11546472 11546627 MamRep4096 390 + 104 254 93568 27 95 90 33 chain 67368 chr3 198295559 + 11595255 11595993 L1PA3long 6157 + 5416 6157 24607 600 0 3 138 chain 30639 chr3 198295559 + 11606494 11607002 LTR12F 595 + 0 595 41437 24 13 14 48 0 1 15 1 2 18 1 0 8 21 85 9 25 0 16 18 0 47 8 72 236 chain 23778 chr3 198295559 + 11633394 11633684 AluSc 308 + 8 295 51144 49 2 1 73 2 0 164 chain 28079 chr3 198295559 + 11645308 11645618 AluYb8 318 + 0 303 44753 242 7 0 61 chain 32764 chr3 198295559 + 11796766 11797354 L1PA13 3608 + 2977 3548 39703 60 1 0 59 13 14 22 0 13 14 1 0 80 36 34 62 1 0 27 1 0 28 0 1 5 2 0 47 2 0 5 2 0 13 2 1 4 1 0 22 6 3 13 5 0 14 1 0 4 23 14 12 chain 13522 chr3 198295559 + 11889949 11890146 L1MA3 4352 + 4134 4328 64286 126 2 0 7 0 2 13 9 7 26 1 0 13 chain 236184 chr3 198295559 + 11894881 11897750 L1PA5 6144 + 724 3540 8563 228 24 0 110 3 1 102 13 4 29 0 1 203 0 1 261 0 1 71 9 10 27 27 0 540 3 1 302 0 1 553 0 1 48 7 11 66 0 1 243 chain 64932 chr3 198295559 + 11918165 11919065 LTR12 884 + 0 884 25207 24 1 0 50 2 0 179 0 91 34 2 0 336 102 0 170 chain 64460 chr3 198295559 + 11931920 11932656 L1PA4 6152 + 5404 6140 25318 736 chain 25465 chr3 198295559 + 12097033 12097322 L1PA5 6144 + 5498 5779 48529 222 8 0 59 chain 24159 chr3 198295559 + 12110771 12111054 THE1B-int 1605 + 1320 1605 50564 174 0 2 109 chain 9519 chr3 198295559 + 12238061 12238202 L1PB4 2604 + 2362 2497 71435 12 15 9 114 chain 3781 chr3 198295559 + 12313468 12313513 Tigger4a 237 - 189 234 92986 45 chain 15062 chr3 198295559 + 12435743 12435944 MER107 203 + 2 202 62189 156 8 7 37 chain 14018 chr3 198295559 + 12550592 12550775 MER50 708 + 514 696 63565 23 6 1 6 0 4 148 chain 198941 chr3 198295559 + 12639040 12641378 L1PA5 6144 + 3784 6143 9746 17 0 1 28 1 15 26 12 13 602 0 4 448 0 1 355 1 0 55 0 3 40 0 3 118 0 1 515 19 11 90 1 3 10 chain 2992 chr3 198295559 + 12652600 12652648 Tigger2 2703 + 306 355 99945 34 2 0 5 0 3 7 chain 78906 chr3 198295559 + 12674114 12675082 LTR5_Hs 974 + 0 974 21897 418 2 1 30 1 7 94 1 0 106 0 1 119 7 7 48 0 1 142 chain 3088 chr3 198295559 + 12690057 12690092 MLT1C 463 + 64 99 98883 35 chain 80271 chr3 198295559 + 12770599 12771612 LTR13 1007 + 0 1007 21577 304 1 0 77 2 3 244 2 1 54 33 28 250 0 2 6 9 7 31 chain 8005 chr3 198295559 + 12824158 12824243 L1PA6 6164 + 6076 6161 74873 85 chain 5166 chr3 198295559 + 12864713 12864779 LTR10G 522 + 0 65 84837 40 1 0 25 chain 68362 chr3 198295559 + 12867826 12868729 LTR13_ 950 + 0 950 24368 68 0 4 103 0 3 92 1 3 64 50 90 172 1 0 53 2 0 102 2 1 100 0 2 93 chain 7196 chr3 198295559 + 12883316 12883542 LTR12C 1709 + 769 875 76953 58 130 10 38 chain 5496 chr3 198295559 + 12973642 12973743 L1MA3 4352 + 4258 4352 83252 24 2 1 5 1 0 25 1 0 15 6 2 22 chain 3894 chr3 198295559 + 13142630 13142676 MER58B 340 + 58 104 92188 46 chain 27256 chr3 198295559 + 13169085 13169429 THE1B 368 + 0 368 45886 40 0 15 117 1 0 137 0 10 49 chain 91997 chr3 198295559 + 13169429 13170588 THE1B-int 1605 + 0 1201 19343 25 3 0 5 6 12 387 2 27 170 1 0 374 2 17 184 chain 4370 chr3 198295559 + 13173774 13173851 MER5A 189 + 1 76 89053 10 2 0 9 0 2 5 7 5 44 chain 32151 chr3 198295559 + 13178803 13179249 LOR1b 457 + 0 457 40229 29 3 0 6 0 13 20 0 1 57 17 17 108 0 1 134 1 0 71 chain 116389 chr3 198295559 + 13179572 13180974 LTR12C 1709 + 0 1709 16159 338 0 43 83 2 0 5 2 0 146 0 1 34 0 278 184 1 0 5 3 1 106 11 4 399 1 0 82 chain 3175 chr3 198295559 + 13212086 13212123 MIRb 242 + 91 128 98141 37 chain 5969 chr3 198295559 + 13362426 13362526 MLT1A0 366 + 227 327 81198 16 1 0 35 12 13 36 chain 4478 chr3 198295559 + 13453610 13453763 LTR38 553 + 16 168 88448 27 0 48 12 79 30 35 chain 5756 chr3 198295559 + 13649749 13649846 L1MC1 2226 + 1955 2047 82102 25 3 0 12 6 4 51 chain 3689 chr3 198295559 + 13809803 13809901 MER53 195 + 0 95 93685 35 43 40 20 chain 2694 chr3 198295559 + 13813697 13813866 MLT1H 522 + 111 282 102379 20 1 3 15 114 114 19 chain 5745 chr3 198295559 + 13871085 13871150 MLT1J 494 + 105 170 82155 65 chain 100481 chr3 198295559 + 13905396 13906797 L1PA11 4918 + 3178 4567 18240 117 0 1 416 3 4 203 24 25 95 1 2 272 0 4 10 2 0 4 0 1 24 0 1 34 4 3 13 3 0 67 2 0 14 1 0 20 53 41 5 1 0 13 chain 258541 chr3 198295559 + 13910729 13915119 L1PB2 3958 + 108 3830 8011 32 2 0 35 9 5 7 0 4 36 1 0 4 2 0 172 0 3 131 1 0 120 3 4 137 0 1 238 0 7 81 7 6 76 37 0 31 6 12 95 6 10 16 330 0 204 0 4 11 1 0 95 0 4 89 5 6 23 1 0 138 2 1 333 22 26 149 1 0 16 7 23 55 2 1 110 7 8 256 4 3 25 0 1 210 0 2 31 10 16 59 0 5 9 1 4 21 2 0 19 20 0 32 3 1 13 3 0 65 31 19 123 312 0 36 1 0 8 1 0 7 1 0 5 0 1 35 7 6 33 0 1 36 2 0 26 1 0 10 1 0 45 chain 83818 chr3 198295559 + 13918092 13919009 L1PA3long 6157 + 5238 6156 20842 399 0 1 518 chain 39732 chr3 198295559 + 13921502 13922037 MLT2A2 560 + 9 560 34869 144 0 1 26 1 0 219 8 19 54 13 18 70 chain 27902 chr3 198295559 + 13923599 13923976 THE1C 375 + 0 375 45035 15 2 0 101 2 3 139 1 0 117 chain 82558 chr3 198295559 + 13968516 13969419 L1PA3long 6157 + 4263 5166 21109 903 chain 3222 chr3 198295559 + 14037776 14037816 LTR12C 1709 + 1119 1159 97717 40 chain 12550 chr3 198295559 + 14059797 14059942 L1PA4 6152 + 6008 6151 65900 138 2 0 5 chain 490897 chr3 198295559 + 14070101 14075602 L1PA4 6152 + 4 5516 3398 1168 0 4 60 0 1 1529 0 1 397 0 1 513 0 2 277 0 2 1557 chain 27979 chr3 198295559 + 14184472 14184770 AluYa5 310 + 0 295 44904 97 3 0 198 chain 35899 chr3 198295559 + 14225057 14225496 LTR3A 482 + 0 449 37476 156 7 16 270 0 1 6 chain 16569 chr3 198295559 + 14225680 14226185 HERVK3-int 3053 + 131 566 60293 5 1 0 13 14 0 45 108 73 9 2 0 9 9 5 4 0 1 74 1 0 9 42 37 21 23 16 25 16 14 75 chain 35468 chr3 198295559 + 14229798 14230255 LTR3A 482 + 0 475 37743 19 10 19 119 6 15 303 chain 71646 chr3 198295559 + 14272844 14273811 LTR5_Hs 974 + 0 974 23622 19 0 2 438 0 4 168 8 7 21 0 1 14 3 5 23 2 0 35 8 0 10 7 15 14 7 7 34 18 19 138 chain 133584 chr3 198295559 + 14293038 14294714 LTR12C 1709 + 0 1709 13684 131 0 15 26 1 0 117 10 6 41 5 48 48 2 0 94 1 0 258 5 0 53 1 0 72 0 1 202 1 0 5 3 1 100 1 0 6 11 4 211 0 1 121 1 0 44 21 20 84 chain 6814 chr3 198295559 + 14394675 14394759 5S 121 + 38 121 78264 9 1 0 74 chain 27555 chr3 198295559 + 14572331 14572634 AluYa5 310 + 0 304 45504 50 2 3 251 chain 9408 chr3 198295559 + 14642240 14642538 MLT1A1 405 + 59 403 71684 29 140 178 15 5 14 35 3 2 71 chain 2784 chr3 198295559 + 14713651 14713686 MER81 114 - 0 34 101736 14 1 0 20 chain 172368 chr3 198295559 + 14751488 14753492 L1PA6 6164 + 4160 6159 10980 875 1 0 39 4 0 1085 chain 33354 chr3 198295559 + 14884769 14885187 LTR3A 482 + 0 448 39212 161 0 9 25 0 14 134 0 7 98 chain 128491 chr3 198295559 + 14967730 14969145 L1PA3long 6157 + 4738 6156 14222 572 0 4 658 1 0 184 chain 155607 chr3 198295559 + 15061189 15063065 SVA_D 2077 + 0 2077 12035 10 1 7 40 0 2 483 0 80 156 40 0 142 1 0 24 15 57 20 0 51 50 1 0 25 1 2 33 2 0 27 1 0 51 1 0 15 1 0 43 0 48 22 0 1 56 1 0 478 0 20 116 2 0 18 chain 4336 chr3 198295559 + 15134453 15134504 MADE1 96 + 45 96 89258 51 chain 51873 chr3 198295559 + 15166244 15166865 L1PA8A 6298 + 5671 6291 28917 520 1 0 100 chain 548564 chr3 198295559 + 15186667 15192699 L1PA3long 6157 + 0 6157 834 118 0 1 32 1 2 623 0 128 2992 0 2 1092 8 1 1166 chain 240639 chr3 198295559 + 15192837 15195732 L1PA7 6471 + 3546 6460 8457 116 0 1 316 0 1 107 0 5 189 11 14 383 1 3 402 0 1 539 0 5 70 0 1 37 0 1 399 0 1 302 2 0 21 chain 3252 chr3 198295559 + 15222228 15222263 MER66B 489 + 295 330 97464 35 chain 29924 chr3 198295559 + 15247859 15248182 L1PA2 6032 + 5703 6026 42119 323 chain 3917 chr3 198295559 + 15313510 15313553 MADE1 96 + 53 96 92001 43 chain 5788 chr3 198295559 + 15339748 15339814 U6 107 + 0 66 81976 66 chain 3162 chr3 198295559 + 15344999 15345034 MADE2 80 + 45 80 98260 35 chain 5299 chr3 198295559 + 15369835 15369899 MER63A 208 + 87 151 84201 64 chain 8157 chr3 198295559 + 15385195 15385314 LTR23 429 + 154 297 74507 48 5 6 20 0 24 28 1 0 17 chain 11683 chr3 198295559 + 15433771 15433931 Tigger3d 321 + 38 196 67424 4 1 0 132 1 0 5 0 1 12 1 0 4 chain 3547 chr3 198295559 + 15507991 15508028 tRNA-Gly-GGG 71 + 0 37 94881 37 chain 8083 chr3 198295559 + 15513593 15513713 LTR16C 481 + 353 481 74672 36 5 15 59 2 0 18 chain 27288 chr3 198295559 + 15549068 15549418 THE1A 353 + 0 353 45844 109 2 1 27 0 4 93 2 1 19 0 1 98 chain 124046 chr3 198295559 + 15549418 15550984 THE1A-int 1579 + 0 1573 14839 632 9 8 206 2 0 431 7 8 128 0 13 17 4 0 75 0 1 34 1 0 20 chain 15434 chr3 198295559 + 15606834 15607071 MER30 238 + 2 238 61743 14 2 20 67 12 0 8 7 5 5 2 0 77 3 0 40 chain 24843 chr3 198295559 + 15608491 15608785 AluSc5 308 + 6 300 49526 294 chain 40671 chr3 198295559 + 15656122 15656645 LTR10G 522 + 0 522 34170 77 1 0 39 2 1 127 0 1 108 1 0 96 0 2 61 1 0 10 chain 12921 chr3 198295559 + 15696851 15697027 L1PB2 3958 + 3619 3791 65221 60 1 0 74 2 0 22 1 0 16 chain 193476 chr3 198295559 + 15698142 15700466 L1PA6 6164 + 3905 6162 9953 1143 1 0 248 0 4 18 0 4 624 62 0 58 0 1 46 9 0 96 1 0 7 3 0 8 chain 3382 chr3 198295559 + 15728594 15728639 Tigger1 2417 + 2298 2341 96277 38 2 0 5 chain 137632 chr3 198295559 + 15741800 15743355 SVA_D 2077 + 98 2062 13293 818 6 396 49 2 1 26 0 1 4 0 1 4 8 6 519 0 20 119 chain 129439 chr3 198295559 + 15789826 15791939 L1MA1 4479 + 2105 4189 14099 14 14 21 38 1 0 8 0 4 37 58 25 21 2 0 245 0 3 27 1 4 50 1 0 62 6 4 75 48 50 11 1 0 30 3 0 32 1 0 92 6 5 13 8 9 163 11 9 5 0 3 86 1 0 11 5 1 126 3 0 26 1 0 25 2 12 67 0 1 195 1 0 24 2 0 16 1 0 10 0 1 8 1 0 27 0 1 7 18 17 19 2 0 14 1 0 23 14 29 35 1 0 5 7 4 123 1 0 29 2 0 29 30 28 8 6 0 17 chain 30967 chr3 198295559 + 15833083 15833490 MLT2A1 477 + 0 402 41152 171 3 0 205 0 3 6 4 0 11 1 0 6 chain 49592 chr3 198295559 + 15841159 15841987 L1MA2 4263 + 3228 3963 29730 96 1 0 4 0 1 15 4 5 152 85 0 71 1 0 10 10 4 74 17 16 30 0 7 96 3 0 62 10 4 36 0 1 4 0 1 40 1 0 6 chain 3773 chr3 198295559 + 15886523 15886567 MLT2B2 565 + 459 503 93047 44 chain 23924 chr3 198295559 + 15915737 15916026 AluY 311 + 6 289 50906 167 9 3 113 chain 28396 chr3 198295559 + 15945996 15946440 Tigger1 2417 + 1967 2370 44276 158 1 0 44 0 2 38 1 0 30 10 12 37 45 2 80 chain 24571 chr3 198295559 + 15946936 15947271 THE1C 375 + 0 336 49901 125 9 6 53 16 20 132 chain 4087 chr3 198295559 + 15952323 15952373 LTR24C 604 + 552 602 90871 50 chain 135591 chr3 198295559 + 15970859 15972603 L1PB1 5432 + 3343 5100 13480 389 1 0 21 3 1 358 0 1 88 0 3 65 4 3 236 10 17 82 1 5 16 3 0 52 0 3 118 4 6 293 chain 40741 chr3 198295559 + 16000141 16000613 LTR7Y 441 + 0 441 34128 165 31 0 276 chain 65211 chr3 198295559 + 16077139 16077920 LTR12 884 + 0 869 25132 25 1 0 228 0 91 34 2 0 491 chain 25341 chr3 198295559 + 16096346 16097010 THE1A 353 + 0 343 48726 70 0 1 39 1 0 61 1 2 52 322 0 118 chain 28111 chr3 198295559 + 16097954 16098320 THE1B 368 + 0 368 44694 15 2 0 25 0 5 123 6 5 195 chain 6772 chr3 198295559 + 16182702 16182784 MER5A1 166 + 15 97 78409 82 chain 30316 chr3 198295559 + 16230914 16231322 L1PA8 5853 + 5465 5853 41743 99 1 0 46 2 0 66 0 1 12 1 0 3 7 0 48 2 1 19 10 1 92 chain 15903 chr3 198295559 + 16353632 16353961 MLT1A 405 + 67 405 61147 19 8 7 24 23 21 33 41 53 63 5 4 42 1 0 25 0 5 5 3 0 37 chain 41884 chr3 198295559 + 16559759 16560308 MLT2A2 560 + 0 560 33434 93 0 1 87 1 0 122 8 7 86 6 17 80 0 1 66 chain 5741 chr3 198295559 + 16609680 16609794 MER5A1 166 + 0 125 82175 19 38 49 57 chain 34920 chr3 198295559 + 16623413 16623951 L1MA3 4352 + 2083 2578 38075 165 1 8 57 1 0 23 51 7 169 5 0 66 chain 22009 chr3 198295559 + 16661229 16661563 L1PA17 2846 + 2365 2693 53823 170 1 0 39 32 29 33 1 0 13 1 0 44 chain 5075 chr3 198295559 + 16667722 16667854 MER5A 189 + 12 154 85273 15 0 1 34 57 66 26 chain 7753 chr3 198295559 + 16670289 16670602 MER77B 728 + 18 314 75482 12 39 14 31 0 1 29 1 0 39 54 71 12 14 0 8 4 0 7 46 55 17 chain 31653 chr3 198295559 + 16670631 16671084 MER4A1 472 + 0 472 40620 131 4 0 41 1 0 47 14 36 16 0 5 6 11 6 154 0 2 28 chain 41234 chr3 198295559 + 16674626 16676603 MER4-int 2692 + 1 2017 10400 9 0 2 24 2 0 12 69 72 409 4 5 99 0 5 58 0 2 22 11 17 117 6 7 32 0 1 25 1 2 48 0 7 32 0 2 89 0 10 175 1 0 26 1 0 7 0 1 140 2 0 85 2 1 209 0 1 4 1 0 50 11 13 69 0 2 125 chain 544416 chr3 198295559 + 16676622 16682750 L1PA4 6152 + 8 6151 1061 572 1 0 118 7 0 837 0 12 377 0 8 1163 0 2 2897 0 1 156 chain 13953 chr3 198295559 + 16682763 16683432 MER4-int 2692 + 2017 2691 10400 245 23 26 116 0 1 275 0 1 10 chain 471386 chr3 198295559 + 16731125 16736852 L1PA8 5853 + 124 5853 3822 177 5 9 124 4 8 6 0 7 145 0 8 672 0 3 439 5 25 271 7 0 777 0 1 38 0 4 377 50 7 894 0 1 226 0 3 609 0 1 53 0 2 71 0 2 480 1 0 46 3 0 68 2 1 14 1 0 47 2 1 19 1 0 93 chain 34438 chr3 198295559 + 16744185 16744680 LTR7 482 + 0 482 38406 116 51 0 108 0 1 33 0 1 6 0 31 9 0 1 78 1 3 32 12 14 49 chain 291353 chr3 198295559 + 16744682 16748351 HERVH-int 3825 + 0 3822 7091 108 0 1 224 1 0 197 1 0 11 1 0 4 0 1 24 1 0 10 1 0 12 22 12 14 1 0 12 25 1 19 29 6 30 2 0 5 7 6 17 21 0 29 12 13 7 0 2 13 0 3 445 15 0 459 4 31 284 0 4 261 5 6 30 0 1 580 1 2 74 1 0 112 9 11 36 11 221 260 0 2 222 chain 2042 chr3 198295559 + 16745326 16745351 HERVH-int 3825 + 668 693 95814 25 chain 35183 chr3 198295559 + 16749618 16750064 LTR7 482 + 0 482 37905 224 0 1 21 1 32 11 0 1 17 1 2 110 12 14 49 chain 6257 chr3 198295559 + 16751610 16751681 AluYk4 311 + 209 280 80147 71 chain 129567 chr3 198295559 + 16773534 16775085 LTR12C 1709 + 0 1709 14089 266 0 1 10 4 0 9 0 4 409 0 159 229 3 0 25 9 6 26 0 1 79 0 4 381 1 0 100 chain 325647 chr3 198295559 + 16777951 16781991 L1PA5 6144 + 2405 6144 6288 419 311 0 372 0 1 312 0 1 1359 1 0 8 1 0 4 0 1 149 0 1 239 1 5 115 1 4 220 0 1 528 chain 6671 chr3 198295559 + 16792079 16792238 MER39 703 + 0 168 78731 33 5 6 52 1 12 8 2 0 6 16 0 9 14 29 13 chain 31602 chr3 198295559 + 16804102 16804529 MLT2A1 477 + 0 477 40665 87 2 0 82 6 14 105 3 2 94 0 1 8 3 47 37 chain 29320 chr3 198295559 + 16904644 16905020 THE1C 375 + 0 375 42848 180 18 17 178 chain 6667 chr3 198295559 + 16952096 16952166 L1PA8 5853 + 5608 5678 78742 70 chain 5948 chr3 198295559 + 16952168 16952251 L1PA8 5853 + 5679 5760 81284 10 1 0 50 4 3 18 chain 7655 chr3 198295559 + 16952253 16952364 L1PA8 5853 + 5761 5853 75738 31 19 0 61 chain 39453 chr3 198295559 + 16971896 16972323 L1PA3long 6157 + 3861 4288 35041 427 chain 27318 chr3 198295559 + 17023338 17023691 THE1A 353 + 0 353 45803 110 1 0 69 3 4 170 chain 106653 chr3 198295559 + 17049382 17051007 L1MA2 4263 + 2471 4114 17476 169 8 6 56 2 1 20 1 0 41 9 5 363 0 1 136 0 3 5 9 17 47 0 1 124 24 51 50 2 0 17 7 3 13 12 13 49 1 0 40 0 1 103 3 0 51 1 0 99 11 9 43 38 40 10 7 0 42 2 4 10 chain 95337 chr3 198295559 + 17103667 17104978 L1MA2 4263 + 2767 4057 18862 173 3 0 203 8 5 229 0 1 72 0 5 129 7 3 68 12 11 65 30 19 56 3 0 150 11 9 92 chain 27273 chr3 198295559 + 17127539 17127892 THE1A 353 + 0 353 45861 17 2 0 30 0 1 27 0 1 277 chain 120270 chr3 198295559 + 17127892 17129454 THE1A-int 1579 + 0 1574 15488 7 0 1 136 0 1 375 10 9 121 4 7 436 23 30 446 0 1 4 chain 20326 chr3 198295559 + 17143245 17143611 MSTA 426 + 6 382 55977 109 2 1 5 0 1 12 1 0 9 10 16 14 8 14 27 51 50 118 chain 3460 chr3 198295559 + 17150841 17150886 MLT1J1 437 + 267 312 95548 45 chain 24449 chr3 198295559 + 17176515 17176813 L1PA7 6471 + 6175 6470 50102 277 1 0 7 2 0 11 chain 16455 chr3 198295559 + 17180496 17180758 L1PB4 2604 + 2312 2572 60439 33 8 4 28 2 0 29 0 1 78 13 17 50 1 0 20 chain 54883 chr3 198295559 + 17317778 17318387 L1PA3long 6157 + 5548 6157 27912 609 chain 177860 chr3 198295559 + 17344118 17346079 L1PA3long 6157 + 4198 6157 10687 35 1 0 838 2 0 862 0 1 223 chain 44594 chr3 198295559 + 17351202 17351737 L1PA7 6471 + 5932 6467 31789 158 0 1 273 1 2 93 2 0 8 chain 69281 chr3 198295559 + 17393240 17394036 L1PA7 6471 + 4726 5522 24163 796 chain 41987 chr3 198295559 + 17400556 17401091 MLT2A2 560 + 0 547 33363 335 2 1 66 0 11 47 5 7 80 chain 203314 chr3 198295559 + 17448976 17451626 L1PA7 6471 + 37 5934 9597 342 1 0 15 1 4 5 0 2 257 50 53 217 4 5 526 0 1 600 10 15 213 0 1 121 0 3233 53 0 2 90 4 1 141 chain 4019 chr3 198295559 + 17480633 17480801 MER52A 1651 + 785 980 91310 6 1 0 25 69 0 23 27 124 17 chain 138026 chr3 198295559 + 17530633 17532178 L1PA4 6152 + 3788 5333 13266 1545 chain 357741 chr3 198295559 + 17590072 17594845 HERVL-int 5654 + 844 5653 5825 48 0 1 444 1 2 104 1 0 277 328 0 222 1 0 37 0 1 198 0 4 81 0 1 362 6 2 269 12 4 735 0 367 470 1 3 309 1 0 357 0 6 33 1 0 6 0 1 118 20 7 53 0 3 54 0 5 25 0 1 199 chain 30613 chr3 198295559 + 17594846 17595278 MLT2A1 477 + 0 466 41457 169 4 1 9 0 1 18 0 1 88 1 2 87 0 1 4 1 0 4 4 0 10 7 45 26 chain 28969 chr3 198295559 + 17633954 17634672 L1MA2 4263 + 3649 4218 43376 13 1 0 74 6 0 50 22 20 51 1 0 99 27 25 77 7 0 10 2 1 36 209 80 7 0 2 12 2 0 12 chain 35504 chr3 198295559 + 17647914 17648535 L1PA14 3548 + 2855 3456 37722 61 1 0 4 0 1 13 23 19 44 2 0 8 2 0 14 6 9 83 11 7 13 0 1 4 9 5 53 0 4 21 1 0 61 1 0 51 1 0 11 5 1 33 5 3 14 1 0 5 1 0 17 1 0 41 chain 68747 chr3 198295559 + 17649496 17650303 L1PA7 6471 + 5666 6468 24271 6 3 0 612 0 1 38 0 1 4 1 0 130 3 0 10 chain 24693 chr3 198295559 + 17655184 17655459 L1PA3long 6157 + 5875 6150 49744 275 chain 4584 chr3 198295559 + 17664966 17665024 U7 62 + 4 61 87876 6 1 0 51 chain 161941 chr3 198295559 + 17676293 17678153 L1PA5 6144 + 4274 6144 11616 1023 0 4 182 0 3 399 1 0 96 9 16 129 1 0 6 3 1 11 chain 6740 chr3 198295559 + 17686763 17686874 MER20 218 + 36 153 78511 30 3 4 10 9 14 59 chain 512743 chr3 198295559 + 17693113 17701487 L1PA6 6164 + 0 6162 2632 199 0 1 303 14 16 48 1 0 115 1 2 104 0 11 1061 0 1 472 0 1 31 1 0 477 6 7 13 0 1 4 3 0 246 2 3 315 8 5 87 1 0 1318 2227 4 986 0 1 120 0 3 201 4 0 6 chain 146029 chr3 198295559 + 17697952 17699552 L1PA3long 6157 + 4555 6156 12613 886 0 1 714 chain 51217 chr3 198295559 + 17774261 17774926 LTR12 884 + 0 869 29159 25 1 0 30 0 173 108 1 2 17 0 1 21 2 0 222 1 0 145 1 34 91 chain 395449 chr3 198295559 + 17774969 17779799 HERV9-int 5642 + 0 4824 5227 382 0 1 213 25 24 110 7 9 56 1 0 53 4 2 13 0 85 147 160 0 12 2 4 46 3 7 1081 0 24 59 1 0 511 0 1 1634 0 1 265 0 39 45 chain 3574 chr3 198295559 + 17776030 17776068 HERV9-int 5642 + 1065 1103 94638 38 chain 58339 chr3 198295559 + 17781651 17782391 LTR12 884 + 0 869 26853 25 1 0 30 0 107 75 1 0 4 1 2 80 0 25 30 2 0 221 1 0 247 3 4 19 chain 35309 chr3 198295559 + 17821821 17822268 L1PA8 5853 + 5413 5853 37821 149 1 0 46 2 0 74 1 0 6 1 0 52 2 1 19 1 0 93 chain 44326 chr3 198295559 + 17920156 17920692 L1PA7 6471 + 5909 6464 31934 308 2 1 155 1 20 19 0 1 51 chain 10302 chr3 198295559 + 17927520 17927668 MLT1A1 405 + 174 391 69802 17 0 1 79 9 77 43 chain 26759 chr3 198295559 + 17950334 17950705 THE1C 375 + 0 375 46604 88 0 1 83 1 0 4 24 28 171 chain 28300 chr3 198295559 + 17952291 17952668 THE1C 375 + 0 375 44418 116 10 9 217 3 2 31 chain 11055 chr3 198295559 + 17991876 17992057 MER30 238 + 31 225 68480 63 0 2 4 1 0 11 8 20 20 0 6 30 9 3 35 chain 9973 chr3 198295559 + 18023158 18023300 MER5A 189 + 45 188 70476 67 8 9 67 chain 5803 chr3 198295559 + 18046344 18046599 MLT1F2 592 + 84 334 81909 53 170 165 32 chain 6777 chr3 198295559 + 18082299 18082419 MER5A 189 + 26 189 78392 34 0 42 26 20 21 40 chain 188128 chr3 198295559 + 18108952 18111057 L1PA5 6144 + 4039 6144 10204 396 1 2 23 3 0 1107 0 1 242 0 1 333 chain 18394 chr3 198295559 + 18118124 18118342 L1PA5 6144 + 5926 6144 58250 218 chain 31660 chr3 198295559 + 18183004 18183406 MLT2A2 560 + 15 560 40614 127 0 132 128 0 11 147 chain 25929 chr3 198295559 + 18183411 18183734 THE1B-int 1605 + 6 332 47821 9 0 2 55 0 1 259 chain 27034 chr3 198295559 + 18198134 18198528 L1PB2 3958 + 3451 3830 46221 105 12 0 38 0 1 22 1 0 64 4 3 69 2 0 22 1 0 6 5 6 43 chain 10582 chr3 198295559 + 18280789 18280911 Tigger3a 397 + 158 280 69261 122 chain 372720 chr3 198295559 + 18516080 18520244 L1HS 6032 + 0 4163 5608 149 1 3 8 3 1 94 2 1 108 0 1 2722 1 0 1076 chain 107912 chr3 198295559 + 18520244 18521643 HERVL-int 5654 + 4273 5654 17339 506 7 0 6 7 0 116 1 4 213 0 1 293 0 1 6 0 5 113 19 4 38 0 1 74 chain 30110 chr3 198295559 + 18521643 18522058 MLT2A1 477 + 0 468 41934 66 0 2 101 0 4 32 5 6 19 0 6 149 18 58 25 chain 53523 chr3 198295559 + 18705460 18706306 L1MA2 4263 + 34 889 28388 10 0 3 65 2 3 4 1 0 44 6 0 93 17 17 36 8 18 5 1 0 92 13 19 16 1 0 5 0 1 18 1 0 127 9 18 59 4 5 39 12 0 158 chain 48202 chr3 198295559 + 18940737 18941308 L1PA7 6471 + 5891 6462 30216 422 0 1 143 1 0 5 chain 315077 chr3 198295559 + 18942312 18946177 HERVL-int 5654 + 0 3899 6503 592 1 2 17 0 2 406 0 1 66 10 25 366 5 6 82 1 0 159 6 8 95 5 7 480 0 9 295 0 1 548 0 2 237 1 0 493 chain 548908 chr3 198295559 + 18975949 18982079 L1PA3long 6157 + 10 6149 817 941 0 4 81 1 0 9 1 4 141 0 3 1132 0 1 851 1 0 2972 chain 60069 chr3 198295559 + 19004634 19005360 L1PA7 6471 + 4994 5720 26355 301 0 1 325 2 1 98 chain 3887 chr3 198295559 + 19015074 19015169 MER53 195 - 15 113 92231 12 21 22 34 4 6 24 chain 378856 chr3 198295559 + 19118712 19124059 L1PA8 5853 + 479 5853 5507 44 83 84 6 0 4 37 11 9 41 73 61 588 17 18 44 1 0 323 0 2 8 0 2 156 5 7 105 17 0 167 4 6 63 0 1 4 5 4 170 0 1 34 24 20 200 9 22 159 1 2 16 1 0 19 0 1 7 5 6 9 0 4 36 0 26 47 18 14 253 1 2 279 0 1 45 18 17 124 0 6 227 1 0 94 0 1 114 15 16 70 0 1 28 2 1 28 1 0 6 6 7 446 1 0 188 2 0 22 1 2 59 0 1 141 0 1 42 0 4 282 1 0 46 2 0 72 1 0 7 1 0 51 2 1 10 0 2 7 1 0 93 chain 3476 chr3 198295559 + 19145104 19145208 MLT1G1 539 + 254 345 95403 25 5 3 9 27 22 6 6 0 26 chain 11148 chr3 198295559 + 19296636 19296844 L1PB1 5432 + 5245 5430 68344 35 1 0 16 24 12 19 2 0 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 11 1 0 8 1 0 7 chain 13977 chr3 198295559 + 19306901 19307107 L1MA5A 2387 + 927 1131 63629 27 21 19 158 chain 480791 chr3 198295559 + 19350334 19355886 L1PA5 6144 + 587 6137 3612 582 9 0 770 1 0 440 0 4 819 2 1 76 0 1 238 0 1 822 0 4 949 1 0 843 chain 58794 chr3 198295559 + 19424017 19424840 L1PB2 3958 + 2627 3456 26741 118 5 8 57 0 8 11 12 0 52 0 1 42 1 0 317 3 16 51 3 1 49 4 3 78 2 0 13 1 0 4 chain 26806 chr3 198295559 + 19466225 19466571 Tigger1 2417 + 1796 2145 46531 23 2 6 216 1 0 104 chain 79698 chr3 198295559 + 19498807 19500000 L1HS 6032 + 850 2075 21695 186 0 31 570 7 9 174 1 0 255 chain 353636 chr3 198295559 + 19500000 19503936 L1PA3long 6157 + 2203 6155 5872 81 0 1 149 0 3 272 0 5 152 0 1 222 0 4 434 0 1 418 0 1 207 0 4 639 4 0 1358 chain 24669 chr3 198295559 + 19544669 19544968 L1PA6 6164 + 5863 6162 49773 299 chain 256201 chr3 198295559 + 19581801 19584677 L1PA4 6152 + 2644 5521 8084 877 0 1 272 0 1 808 1 0 918 chain 107374 chr3 198295559 + 19626059 19627263 L1P1 4361 + 2501 3709 17397 753 0 4 451 chain 160880 chr3 198295559 + 19636667 19638540 L1PA5 6144 + 4009 5880 11689 151 0 1 7 1 0 460 3 0 666 1 0 151 0 2 433 chain 139394 chr3 198295559 + 19650071 19651790 L1PA7 6471 + 4767 6466 13148 330 22 0 168 0 1 88 1 0 45 1 2 213 0 3 81 0 2 19 1 0 144 0 1 455 5 4 136 3 0 7 chain 385126 chr3 198295559 + 19689039 19694891 L1PB1 5432 + 34 5420 5396 18 1 2 137 0 1 108 23 9 93 1 0 4 0 1 220 0 1 67 1 0 4 0 4 21 4 5 37 4 3 128 1 0 4 0 1 55 15 16 168 21 19 183 0 6 9 28 0 23 22 0 14 5 23 183 0 5 75 7 8 550 7 6 7 0 1 239 1 0 85 0 5 248 0 4 8 13 1 43 0 3 40 9 10 371 12 11 55 2 1 20 0 1 249 1 0 82 2 3 176 0 6 17 302 6 19 1 0 35 0 1 113 95 4 266 7 5 201 0 1 44 3 0 178 0 5 179 29 31 84 40 0 14 3 0 19 1 0 10 1 0 12 5 1 8 2 0 17 0 12 24 2 1 15 1 0 45 1 0 15 28 15 16 3 1 4 1 0 14 2 0 24 1 0 11 1 2 7 0 3 11 1 0 16 chain 6775 chr3 198295559 + 19693432 19693525 L1PB1 5432 + 3477 3558 77382 60 12 0 21 chain 6346 chr3 198295559 + 19703241 19703335 LTR12C 1709 + 737 877 79851 9 0 6 62 3 43 20 chain 3124 chr3 198295559 + 19706724 19706792 MER5B 177 + 29 107 98587 18 22 32 28 chain 9185 chr3 198295559 + 19729172 19729341 L1MB8 1703 + 1409 1581 72156 16 1 0 4 0 1 5 2 0 68 18 21 40 4 6 11 chain 99293 chr3 198295559 + 19751860 19752943 L1PA4 6152 + 4089 5172 18375 1083 chain 189307 chr3 198295559 + 19778129 19780268 L1PA4 6152 + 3380 5521 10149 395 0 3 326 1 0 1417 chain 121540 chr3 198295559 + 19785530 19787443 THE1A-int 1579 + 0 1570 15253 332 1 7 77 2 1 21 359 1 321 4 1 79 0 5 37 21 26 90 0 2 167 0 1 402 chain 24928 chr3 198295559 + 19787452 19787784 THE1A 353 + 0 332 49385 110 1 0 81 24 25 116 chain 88333 chr3 198295559 + 19787986 19788976 L1P1 4361 + 2786 3777 19979 391 1 0 67 0 3 436 1 0 94 chain 25490 chr3 198295559 + 19811794 19812222 MER61D 487 + 0 487 48498 145 0 60 11 25 25 28 29 32 22 13 11 72 1 0 66 1 0 15 chain 141659 chr3 198295559 + 19853014 19854639 L1PA5 6144 + 4518 6142 12964 1471 8 7 146 chain 549520 chr3 198295559 + 19855048 19861075 L1PA2 6032 + 0 6030 781 4668 4 6 43 0 1 1312 chain 9718 chr3 198295559 + 19863526 19863634 L1PA5 6144 + 5506 5614 71008 108 chain 44307 chr3 198295559 + 19863642 19864148 L1PA5 6144 + 5623 6128 31942 409 1 0 96 chain 68551 chr3 198295559 + 19911594 19912842 L1M1 2793 + 1111 2185 24322 53 20 21 63 2 0 23 5 0 9 19 18 10 0 1 4 1 0 22 166 0 52 0 3 172 0 4 129 9 4 36 15 13 60 6 0 17 22 21 195 6 0 9 0 7 31 2 0 8 0 6 56 0 1 26 chain 77826 chr3 198295559 + 19987774 19988838 MER11B 1079 + 0 1079 22137 190 28 35 312 0 1 4 6 5 28 18 20 77 0 4 90 5 7 102 1 2 39 2 1 70 2 0 46 0 1 30 1 2 13 chain 3076 chr3 198295559 + 20046824 20046859 MER20 218 + 31 66 99008 35 chain 23705 chr3 198295559 + 20125041 20125328 AluYk4 311 + 0 305 51270 19 0 1 103 1 0 27 8 26 129 chain 4530 chr3 198295559 + 20168531 20168605 MER3 215 + 17 88 88154 30 9 6 35 chain 21571 chr3 198295559 + 20170132 20170383 AluSp 311 + 11 267 54407 8 0 5 243 chain 2734 chr3 198295559 + 20194101 20194133 L1MD2 1676 + 1466 1498 102083 32 chain 25472 chr3 198295559 + 20216428 20216717 AluSc 308 + 7 296 48517 289 chain 120467 chr3 198295559 + 20237041 20238374 L1PA3long 6157 + 4816 6156 15448 501 0 1 44 0 3 17 0 3 771 chain 54598 chr3 198295559 + 20269428 20270231 LTR12_ 688 + 0 688 28010 126 0 1 15 3 4 35 25 1 159 0 2 111 95 0 234 chain 1473 chr3 198295559 + 20269916 20269967 LTR12_ 688 + 476 527 80328 51 chain 59032 chr3 198295559 + 20275731 20276443 LTR12_ 688 + 0 688 26655 170 24 0 518 chain 77736 chr3 198295559 + 20282478 20283557 MER11A 1151 + 0 1151 22156 40 1 0 15 0 99 76 1 0 27 1 0 37 4 0 32 0 2 115 0 1 93 1 2 145 5 6 144 19 0 5 1 0 8 8 15 22 18 0 36 0 1 60 6 7 78 5 9 76 chain 26692 chr3 198295559 + 20311838 20312136 AluYk4 311 + 8 307 46697 20 0 1 278 chain 6840 chr3 198295559 + 20329297 20329562 LTR37A 408 + 65 340 78171 19 159 170 8 1 0 78 chain 149655 chr3 198295559 + 20385534 20388311 MER57-int 2662 + 529 2659 12374 174 41 42 125 0 8 192 314 0 32 3 7 257 0 2 31 1 0 147 0 1 54 0 16 275 0 1 16 3 0 197 329 0 226 6 1 61 1 6 13 5 0 10 1 0 10 8 3 68 14 2 11 2 0 26 1 0 5 1 0 8 3 0 26 1 0 4 5 6 33 3 0 34 chain 27905 chr3 198295559 + 20388316 20388738 MER57A1 433 + 0 430 45030 207 9 16 57 39 40 110 chain 29854 chr3 198295559 + 20443534 20443968 MLT2A1 477 + 0 477 42179 81 1 0 87 5 2 9 0 1 24 0 1 121 14 31 26 0 2 22 15 41 29 chain 2188 chr3 198295559 + 20443978 20444002 MLT2A1 477 + 301 325 105338 24 chain 3847 chr3 198295559 + 20444016 20444064 MLT2A1 477 + 335 383 92521 48 chain 3934 chr3 198295559 + 20484317 20484361 MADE1 96 + 5 49 91873 44 chain 13597 chr3 198295559 + 20609107 20609449 L1PB1 5432 + 5107 5413 64168 7 3 0 11 10 9 13 17 12 10 10 8 43 2 1 16 11 7 36 1 0 16 3 0 7 14 5 19 8 5 14 2 0 24 1 0 34 1 0 9 chain 38428 chr3 198295559 + 20630087 20630519 L1PA3long 6157 + 5725 6157 35771 432 chain 129058 chr3 198295559 + 20715402 20716937 L1PA7 6471 + 4918 6470 14141 294 0 1 365 3 0 47 1 4 57 0 1 11 0 14 130 3 4 624 chain 6593 chr3 198295559 + 20800801 20800915 L1MA5A 2387 + 1933 2049 78997 43 15 18 39 1 0 16 chain 32898 chr3 198295559 + 20841660 20842163 LTR3B_ 500 + 0 459 39591 78 2 1 71 0 1 4 8 7 141 0 1 40 9 7 56 0 2 21 46 2 27 chain 32291 chr3 198295559 + 20871638 20872124 MLT2A1 477 + 0 477 40119 141 1 2 25 1 5 151 1 0 38 49 35 47 0 1 32 chain 85568 chr3 198295559 + 20872124 20877846 HERVL-int 5654 + 0 5654 20526 103 1 2 4 1 0 307 1 3 168 1 0 4 0 1 63 0 1 174 4 5 45 2740 1873 4 935 952 5 804 1580 70 0 1 69 0 1 219 chain 31363 chr3 198295559 + 20877846 20878286 MLT2A1 477 + 0 477 40840 126 1 0 15 1 2 22 5 9 149 1 0 62 16 50 42 chain 34952 chr3 198295559 + 20920939 20921405 L1PB1 5432 + 2827 3299 38052 15 1 0 45 2 5 113 8 12 282 chain 137420 chr3 198295559 + 20961584 20963618 MER4-int 2692 + 954 2685 13307 61 7 5 541 2 5 71 305 0 542 0 1 104 2 3 54 0 2 61 2 1 275 2 0 5 chain 45225 chr3 198295559 + 21009179 21010104 MER11C 1089 + 0 1074 31466 55 0 91 113 0 3 57 1 18 123 8 11 6 4 0 23 301 336 53 0 1 70 0 1 31 1 3 79 chain 325344 chr3 198295559 + 21124551 21128715 L1P3 4156 + 0 4139 6299 242 23 22 56 1 0 81 6 0 99 9 8 296 0 1 194 12 6 403 1 4 1143 0 3 23 0 1 52 24 1 96 1 0 145 7 11 23 0 3 511 2 1 54 5 4 36 0 1 44 0 4 73 0 1 189 1 2 164 3 0 110 2 0 7 2 1 24 chain 2962 chr3 198295559 + 21129891 21129924 MER33 330 + 261 294 100268 33 chain 11058 chr3 198295559 + 21150584 21150731 L1PA7 6471 + 6326 6467 68474 7 7 0 125 0 1 8 chain 54060 chr3 198295559 + 21182313 21183532 L1PA3long 6157 + 4982 6157 28209 378 40 0 367 4 0 430 chain 11519 chr3 198295559 + 21196015 21196157 L1PA7 6471 + 6197 6338 67715 25 1 0 116 chain 126353 chr3 198295559 + 21277132 21278507 L1PA3long 6157 + 3969 5344 14502 1375 chain 59099 chr3 198295559 + 21307137 21308281 L1PB1 5432 + 4363 5422 26636 91 0 2 95 23 22 53 2 0 59 0 2 16 0 2 50 4 5 52 23 22 18 8 1 18 0 1 12 0 3 140 11 12 59 8 7 11 133 71 33 2 1 10 5 4 45 1 0 16 1 0 4 2 0 10 9 0 16 3 1 5 1 0 7 9 7 24 1 0 22 1 0 12 1 0 18 chain 84570 chr3 198295559 + 21352567 21354120 L1PA7 6471 + 5377 6464 20704 26 0 1 171 1 2 44 6 0 24 1 0 4 0 1 235 12 18 368 469 0 49 2 3 141 chain 37341 chr3 198295559 + 21353463 21353928 LTR2 463 + 0 463 36523 362 12 13 30 6 3 55 chain 314886 chr3 198295559 + 21364853 21368485 L1PA4 6152 + 0 5515 6512 1946 1 0 367 0 1 48 0 1 79 0 1877 35 0 4 129 1 0 697 0 2 329 chain 54456 chr3 198295559 + 21422462 21423157 L1PREC2 3366 + 1690 2391 28069 123 0 3 153 0 1 61 0 1 137 0 1 221 chain 194910 chr3 198295559 + 21454555 21456745 L1PA5 6144 + 3947 6143 9894 94 0 1 307 0 4 720 3 0 224 0 4 842 chain 256736 chr3 198295559 + 21544009 21547604 MER61-int 3695 + 31 3678 8068 19 1 0 131 4 6 23 0 10 12 0 2 38 1 0 137 9 10 52 9 0 68 0 4 94 2 0 44 61 64 57 6 5 275 0 2 38 0 5 123 0 1 169 0 2 91 15 18 8 2 0 69 0 4 7 0 5 72 3 1 5 0 1 79 5 6 292 0 13 33 0 1 10 3 0 20 2 4 12 13 4 207 0 1 39 0 1 154 0 1 35 1 0 85 0 6 61 1 0 96 1 0 148 1 0 4 0 1 135 5 6 4 1 0 13 3 5 161 3 5 214 0 4 9 0 1 4 1 0 68 1 7 26 chain 33181 chr3 198295559 + 21569694 21570065 L1PA3long 6157 + 5783 6155 39376 225 3 4 143 chain 38684 chr3 198295559 + 21599823 21600348 MER41A 554 + 13 545 35575 16 3 0 165 1 5 140 1 0 4 0 1 11 0 2 111 23 27 50 chain 74624 chr3 198295559 + 21698602 21699498 L1PA7 6471 + 5574 6470 22929 48 2 0 79 0 2 7 11 8 187 0 3 562 chain 19659 chr3 198295559 + 21716846 21717113 AluSc 308 + 5 261 56843 133 26 15 108 chain 417214 chr3 198295559 + 21723132 21728279 L1PA7 6471 + 1284 6454 4918 386 1 0 63 0 4 524 1 0 242 16 18 111 33 0 75 0 1 357 0 1 694 0 1 43 7 8 194 0 4 654 0 4 106 0 3 535 2 1 301 0 3 17 0 1 77 0 3 127 3 5 251 0 28 156 1 2 170 chain 3229 chr3 198295559 + 21740281 21740359 MER5A1 166 + 5 81 97680 14 30 28 34 chain 188222 chr3 198295559 + 21769120 21771250 L1PA5 6144 + 4018 6144 10199 183 1 0 146 1 0 776 1 0 768 1 0 253 chain 510956 chr3 198295559 + 21812230 21818317 L1PA5 6144 + 0 6121 2721 135 62 76 374 0 2 578 13 4 668 0 3 343 0 16 115 0 1 691 1 0 188 0 1 72 0 4 411 1 0 201 0 2 456 0 4 12 8 0 292 1 2 495 0 1 155 0 9 247 0 1 93 4 0 332 4 0 9 0 2 126 chain 5138 chr3 198295559 + 21829752 21829829 MADE1 96 + 3 96 84969 20 6 22 51 chain 22804 chr3 198295559 + 21957276 21957558 THE1A-int 1579 + 0 284 52654 15 0 2 267 chain 20225 chr3 198295559 + 22000349 22000605 MER41A 554 + 217 467 56108 152 5 0 32 2 1 65 chain 20724 chr3 198295559 + 22004558 22005009 MER4A1 472 + 55 450 55465 44 84 0 38 0 5 50 0 1 23 38 59 91 0 3 5 3 0 12 27 28 36 chain 30246 chr3 198295559 + 22023928 22024387 MLT2A1 477 + 6 477 41809 53 2 0 83 0 1 25 1 5 22 6 6 6 2 0 186 29 37 27 1 0 10 0 4 6 chain 425504 chr3 198295559 + 22024387 22029868 HERVL-int 5654 + 0 5654 4807 27 0 8 107 111 0 265 0 1 149 1 2 146 0 1 160 0 5 78 0 2 383 0 13 274 32 0 35 19 17 69 0 4 152 0 1 4 0 2 62 0 3 667 10 256 613 0 4 44 0 8 114 5 6 229 0 4 75 5 6 696 34 34 175 0 3 377 1 0 61 0 3 91 0 1 37 0 1 102 0 6 71 chain 27289 chr3 198295559 + 22029868 22030252 MLT2A1 477 + 0 383 45843 42 2 0 17 2 0 83 0 1 26 1 5 21 20 18 170 chain 23850 chr3 198295559 + 22037847 22038107 L1PA4 6152 + 4759 5019 51021 260 chain 290569 chr3 198295559 + 22053195 22056287 L1HS 6032 + 2940 6032 7111 3092 chain 402589 chr3 198295559 + 22082081 22087073 L1PA5 6144 + 0 6129 5123 129 1 15 794 1 0 14 25 0 123 7 4 86 13 4 58 0 1 171 0 1 761 0 1 32 0 2 39 0 1 78 0 1 163 1 0 106 0 3 161 0 1 316 5 3 43 14 12 87 7 11 371 1 23 268 0 2 459 0 4 220 11 1129 402 0 5 25 chain 79053 chr3 198295559 + 22099959 22100843 L1PA3long 6157 + 5273 6157 21855 530 1 0 187 0 1 166 chain 94294 chr3 198295559 + 22109714 22110790 L1PA4 6152 + 5076 6143 18999 147 1 0 32 12 0 51 0 4 833 chain 117467 chr3 198295559 + 22137195 22138527 L1PA5 6144 + 3505 4843 15978 378 0 2 456 0 4 498 chain 97461 chr3 198295559 + 22179701 22180833 L1PA4 6152 + 2902 4036 18598 479 0 1 130 17 18 506 chain 89820 chr3 198295559 + 22214049 22215120 MER11C 1089 + 0 1073 19716 234 16 18 315 2 1 23 0 1 84 1 0 227 0 1 169 chain 23327 chr3 198295559 + 22215181 22215448 MER11C 1089 + 300 567 51887 267 chain 9358 chr3 198295559 + 22215450 22215557 MER11C 1089 + 568 676 71791 25 0 1 82 chain 8592 chr3 198295559 + 22215559 22215673 MER11C 1089 + 677 783 73465 99 8 0 7 chain 24506 chr3 198295559 + 22215674 22215955 MER11C 1089 + 792 1073 50009 281 chain 22982 chr3 198295559 + 22241966 22242238 L1PA2 6032 + 5760 6032 52389 106 5 0 7 0 5 154 chain 20544 chr3 198295559 + 22260212 22260507 L1PA8 5853 + 5567 5847 55724 43 2 0 42 10 1 26 1 0 8 5 4 49 2 1 18 2 1 87 chain 38853 chr3 198295559 + 22282734 22283389 L1PB1 5432 + 1353 2022 35463 31 13 17 9 1 0 8 1 5 151 14 16 91 11 13 38 1 0 7 16 17 51 4 6 40 7 8 70 0 27 8 27 0 56 chain 54537 chr3 198295559 + 22312797 22313414 L1PA4 6152 + 5536 6152 28033 216 0 3 131 1 0 6 0 1 253 4 0 6 chain 4451 chr3 198295559 + 22417481 22417536 LTR12C 1709 + 873 928 57532 55 chain 26804 chr3 198295559 + 22417536 22417880 LTR12C 1709 + 650 1035 46537 156 0 1 30 1 0 140 1 42 16 chain 46031 chr3 198295559 + 22433808 22434300 L1PA2 6032 + 5536 6028 31047 492 chain 10388 chr3 198295559 + 22441792 22442095 THE1B 368 + 0 306 69643 12 3 1 7 5 0 11 28 34 17 24 0 8 0 24 48 63 68 12 2 1 63 chain 202802 chr3 198295559 + 22446497 22449086 L1PA4 6152 + 3074 5348 9610 97 1 0 1154 315 0 784 0 1 238 chain 20343 chr3 198295559 + 22469603 22469853 L1PA7 6471 + 6205 6456 55956 115 1 2 134 chain 23217 chr3 198295559 + 22473567 22473868 AluSp 311 + 0 296 52057 186 5 0 110 chain 7503 chr3 198295559 + 22482569 22482652 L1PA4 6152 + 4171 4254 76123 83 chain 141347 chr3 198295559 + 22482652 22484224 L1PA4 6152 + 4255 5827 12995 1572 chain 45089 chr3 198295559 + 22516908 22517544 HERVL-int 5654 + 1693 5654 31535 380 0 9 75 0 3 104 2 3315 75 chain 19286 chr3 198295559 + 22517544 22517881 MLT2A2 560 + 0 505 57252 92 0 57 34 2 0 13 37 36 63 0 98 11 1 12 37 5 10 42 chain 25139 chr3 198295559 + 22518004 22518363 L1MA2 4263 + 3232 3584 49059 287 8 5 25 5 4 12 3 0 19 chain 23049 chr3 198295559 + 22521184 22521473 L1PA6 6164 + 5869 6159 52293 130 4 5 155 chain 72608 chr3 198295559 + 22532720 22533553 L1PA5 6144 + 5300 6135 23397 471 0 1 119 1 0 110 7 9 125 chain 92897 chr3 198295559 + 22554288 22555335 L1PA4 6152 + 5109 6152 19195 269 2 0 114 0 1 653 3 0 6 chain 55476 chr3 198295559 + 22610817 22611461 L1PA7 6471 + 5824 6467 27729 312 2 0 195 0 1 135 chain 114980 chr3 198295559 + 22650377 22652080 L1PB1 5432 + 3741 5420 16394 221 18 20 563 0 1 4 1 0 79 8 11 165 2 10 176 3 6 90 0 4 12 23 5 6 1 0 24 1 0 5 0 3 11 23 17 46 2 1 9 7 6 44 1 0 15 69 51 24 1 0 7 0 3 11 1 0 13 1 0 16 chain 10684 chr3 198295559 + 22673144 22673343 MSTA 426 + 1 212 69072 93 55 67 51 chain 16096 chr3 198295559 + 22686862 22687187 L1MA2 4263 + 3810 4114 60898 87 84 81 80 7 0 16 10 0 32 1 0 8 chain 236002 chr3 198295559 + 22687546 22690178 L1PA3long 6157 + 3521 6157 8572 111 0 1 423 6 8 1878 0 1 214 chain 14727 chr3 198295559 + 22690209 22690385 MER1A 529 + 251 427 62634 176 chain 444169 chr3 198295559 + 22707829 22713041 L1PA6 6164 + 914 6158 4493 44 3 0 31 0 1 259 0 21 17 3 0 174 2 1 146 0 1 720 1 2 186 0 1 220 0 2 449 0 1 213 0 1 266 0 1 224 0 1 168 6 8 290 0 4 224 0 1 1243 0 1 323 chain 172944 chr3 198295559 + 22755277 22757615 L1PB1 5432 + 3103 5420 10954 23 0 1 115 10 7 485 0 2 30 0 1 239 1 5 598 8 14 480 13 11 24 1 0 7 18 13 9 2 0 51 8 7 12 1 0 42 41 29 19 8 5 16 2 0 22 1 0 19 17 15 16 chain 554556 chr3 198295559 + 22801378 22807403 L1PA2 6032 + 2 6032 441 916 1 0 3728 4 9 550 0 3 817 2 0 7 chain 436971 chr3 198295559 + 22827076 22832406 L1PA7 6471 + 1070 6460 4621 109 2 0 13 14 4 215 8 10 266 0 1 621 5 4 157 9 0 7 1 10 154 8 1 76 0 1 377 0 4 33 0 2 356 1 0 6 1 0 149 4 0 506 0 14 41 1 2 804 5 63 348 0 1 189 0 2 844 chain 80396 chr3 198295559 + 22848869 22849755 L1PA3long 6157 + 5264 6150 21549 886 chain 60898 chr3 198295559 + 22849870 22850547 L1PA3long 6157 + 5480 6157 26136 677 chain 35396 chr3 198295559 + 22856317 22856735 L1PA5 6144 + 5728 6142 37775 407 4 0 7 chain 107489 chr3 198295559 + 22930177 22931558 L1PA8 5853 + 4474 5853 17388 532 5 6 70 0 2 309 0 2 169 1 0 41 5 3 70 4 3 8 1 0 40 17 16 10 3 0 5 0 2 91 chain 155898 chr3 198295559 + 22974191 22976622 L1PB1 5432 + 3336 5404 12009 292 7 8 100 2 1 158 1 0 272 0 4 39 0 1 398 0 4 15 3 0 475 334 3 8 3 0 24 1 0 9 32 25 48 2 1 16 1 0 44 1 0 15 3 0 15 9 0 16 3 1 4 1 0 14 2 0 10 4 0 14 1 0 14 8 7 13 chain 3393 chr3 198295559 + 23006347 23006393 MER20 218 + 44 89 96137 41 1 0 4 chain 221130 chr3 198295559 + 23044834 23049285 L1PA13 3608 + 86 3548 9008 4 1 0 19 6 4 16 12 9 26 2 1 12 3 0 24 30 19 58 1 2 9 8 6 120 1 0 12 1 0 15 5 3 15 8 3 19 1 0 16 3 1 17 2 0 16 1 0 32 294 0 66 2 0 108 19 20 115 40 26 49 807 136 61 0 5 86 0 11 31 0 7 166 6 15 44 3 7 133 0 3 175 0 1 132 0 4 49 6 17 309 1 4 504 23 25 12 21 20 227 1 0 28 1 0 114 2 0 61 1 0 56 8 5 45 14 10 17 1 0 20 6 3 13 5 0 13 29 19 12 chain 40995 chr3 198295559 + 23064169 23064714 MLT2A2 560 + 0 560 33972 190 0 10 7 11 2 121 0 1 68 3 14 122 0 2 23 chain 16472 chr3 198295559 + 23069903 23070240 LTR62 707 + 264 592 60412 20 3 4 22 112 97 15 0 1 40 0 4 125 chain 46921 chr3 198295559 + 23140402 23140951 L1PA7 6471 + 5772 6320 30692 540 1 0 8 chain 11865 chr3 198295559 + 23140951 23141101 L1PA7 6471 + 6321 6468 67086 140 3 0 7 chain 109079 chr3 198295559 + 23143724 23145028 L1PA6 6164 + 4850 6162 17176 334 10 15 123 0 3 501 0 1 148 1 2 5 1 0 28 0 1 142 2 0 9 chain 156398 chr3 198295559 + 23266649 23268417 L1P1 4361 + 2576 4341 11978 1574 1 0 155 1 0 23 2 1 12 chain 8017 chr3 198295559 + 23273806 23273906 HY3 101 + 0 98 74845 16 2 0 82 chain 51532 chr3 198295559 + 23347104 23347704 L1PA6 6164 + 5555 6156 29031 72 0 1 528 chain 553542 chr3 198295559 + 23349250 23355385 L1PA3long 6157 + 6 6157 514 2182 0 2 96 0 1 352 0 1 1256 1 0 1263 0 5 140 0 4 794 0 4 51 chain 44356 chr3 198295559 + 23360826 23361465 L1PB2 3958 + 3210 3838 31912 82 0 4 13 2 0 52 1 0 78 2 0 9 9 5 24 0 1 6 2 1 132 1 0 62 1 0 66 1 0 10 2 0 16 6 5 62 chain 11175 chr3 198295559 + 23421306 23421469 L1PB4 2604 + 2293 2452 68295 84 13 9 66 chain 23077 chr3 198295559 + 23440005 23440292 AluSg4 309 + 16 297 52250 47 4 0 229 2 0 5 chain 116486 chr3 198295559 + 23543163 23545956 L1PB3 3668 + 1803 3614 16133 309 1 0 6 5 0 63 18 10 7 0 2 267 0 2 78 0 4 110 19 18 36 11 13 105 0 4 151 0 2 15 3 4 131 62 64 58 11 16 13 1 0 14 968 0 61 1 0 25 1 0 87 20 4 18 1 0 4 1 0 6 18 19 37 7 3 14 1 0 12 4 6 13 chain 10748 chr3 198295559 + 23576928 23577113 Tigger1 2417 + 54 255 68957 20 25 34 24 5 6 46 0 6 65 chain 13098 chr3 198295559 + 23578057 23578278 L1PA11 4918 + 4283 4508 64932 48 5 11 48 20 17 19 0 3 19 1 2 24 2 0 14 1 0 20 chain 9529 chr3 198295559 + 23605426 23605581 MLT1A0 366 + 179 363 71414 23 26 55 106 chain 3089 chr3 198295559 + 23607360 23607394 MADE1 96 - 61 95 98869 34 chain 125545 chr3 198295559 + 23617227 23618987 L1PA8A 6298 + 4632 6291 14619 140 38 31 398 0 14 273 0 7 417 0 9 26 9 0 18 90 0 212 51 29 31 3 0 54 chain 2913 chr3 198295559 + 23618583 23618616 L1PA8A 6298 + 5921 5954 100735 33 chain 163346 chr3 198295559 + 23651437 23653310 L1PA5 6144 + 4251 6132 11527 318 0 1 377 0 12 293 5 0 880 chain 3513 chr3 198295559 + 23697906 23697945 MER5A 189 + 1 40 95145 39 chain 24558 chr3 198295559 + 23706616 23706912 AluSp 311 + 5 301 49926 296 chain 5688 chr3 198295559 + 23768657 23768737 L1MB5 1630 + 1366 1445 82395 26 2 1 52 chain 10247 chr3 198295559 + 23774336 23774466 MER47A 366 + 170 301 69907 125 0 1 5 chain 24309 chr3 198295559 + 23932426 23932708 AluSp 311 + 20 302 50316 282 chain 3620 chr3 198295559 + 23933166 23933212 MLT1D 503 + 457 503 94275 46 chain 26688 chr3 198295559 + 24109554 24109879 L1PA7 6471 + 5714 6042 46700 116 0 3 209 chain 5032 chr3 198295559 + 24159667 24159726 MER20 218 + 22 81 85501 59 chain 33217 chr3 198295559 + 24193692 24194260 L1PB1 5432 + 4886 5422 39332 4 0 1 212 1 2 9 7 0 24 2 1 7 1 0 12 5 1 9 2 0 52 19 17 45 1 0 14 20 12 18 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 535834 chr3 198295559 + 24203533 24209820 L1PA5 6144 + 6 6130 1577 502 1 0 100 0 4 1207 0 3 1252 1 0 84 0 1 84 0 4 187 0 3 556 200 0 477 8 6 627 0 6 60 0 1 106 0 4 11 0 4 304 0 9 251 0 1 231 0 1 38 chain 487307 chr3 198295559 + 24280196 24285582 L1PA3long 6157 + 623 6147 3486 153 0 128 1108 1 4 1160 0 1 337 1 3 837 0 4 1789 chain 28423 chr3 198295559 + 24330023 24330328 AluYb8 318 + 0 303 44230 132 2 0 171 chain 89812 chr3 198295559 + 24398232 24399238 L1PA5 6144 + 5134 6144 19717 163 0 4 843 chain 58586 chr3 198295559 + 24473382 24474118 L1PA7 6471 + 5753 6466 26794 359 3 4 136 16 1 54 18 11 141 2 0 7 chain 19100 chr3 198295559 + 24488993 24489264 AluSc5 308 + 20 299 57444 142 15 27 100 4 0 10 chain 6750 chr3 198295559 + 24511792 24511900 MER5A1 166 + 56 165 78473 79 16 17 13 chain 502276 chr3 198295559 + 24566789 24572945 L1PA6 6164 + 46 6162 3050 111 0 1 213 29 36 102 2 1 50 0 1 235 1 18 439 0 1 169 10 5 6 0 6 62 0 1 709 0 2 111 0 1 190 6 5 331 33 0 300 0 3 161 0 1 61 3 7 189 0 1 1106 31 11 475 0 1 167 0 1 497 32 10 43 20 14 262 chain 9852 chr3 198295559 + 24625513 24625626 THE1B-int 1605 + 1492 1605 70717 113 chain 9529 chr3 198295559 + 24626092 24626301 THE1B 368 + 152 368 71413 24 1 0 25 79 87 80 chain 38005 chr3 198295559 + 24636076 24636597 L1PA8 5853 + 2494 3019 36069 341 0 1 33 1 2 17 1 0 16 3 4 6 2 0 20 0 4 20 6 4 8 0 2 47 chain 66620 chr3 198295559 + 24904323 24905145 L1PA7 6471 + 5621 6469 24792 616 5 4 55 31 58 115 chain 3293 chr3 198295559 + 25205596 25205646 L1MA3 4352 + 4234 4282 97073 22 4 2 24 chain 25228 chr3 198295559 + 25216348 25216660 L1PA8A 6298 + 5943 6254 48904 204 1 3 42 3 0 62 chain 3200 chr3 198295559 + 25237781 25237821 MADE1 96 + 52 93 97889 13 0 1 27 chain 3176 chr3 198295559 + 25269442 25269478 MIR 256 + 63 99 98126 36 chain 17767 chr3 198295559 + 25275722 25275928 L1PA5 6144 + 5931 6138 58932 44 0 1 162 chain 476752 chr3 198295559 + 25328558 25334052 L1PA5 6144 + 0 5508 3702 121 0 14 678 1 18 338 9 0 396 0 3 7 3 0 111 0 1 329 1 2 295 12 1 758 0 1 2435 chain 11763 chr3 198295559 + 25625451 25625713 MER30 238 + 0 235 67284 16 20 42 50 33 0 7 7 0 12 5 0 45 4 3 21 3 0 39 chain 6689 chr3 198295559 + 25682621 25682814 L1MB8 1703 + 17 206 78672 4 1 0 26 22 10 11 6 9 33 43 49 47 chain 5710 chr3 198295559 + 25687769 25687884 MER5A1 166 + 35 151 82296 24 34 35 57 chain 42834 chr3 198295559 + 25717207 25717800 L1PA8 5853 + 5261 5853 32870 199 1 3 101 1 0 7 8 12 25 2 0 71 1 0 14 1 0 47 2 1 19 1 0 93 chain 16281 chr3 198295559 + 25769385 25769680 L1MA4 2864 + 2032 2332 60643 86 1 0 72 1 0 8 0 3 17 69 74 6 1 0 34 chain 5216 chr3 198295559 + 25819870 25820167 MER33 330 + 5 288 84599 19 4 0 17 8 0 15 112 106 18 71 75 33 chain 17264 chr3 198295559 + 25849418 25849637 MER6A 605 + 316 535 59501 219 chain 100365 chr3 198295559 + 25851591 25853021 LTR12C 1709 + 0 1708 18251 24 0 9 245 16 18 40 0 43 82 5 6 4 1 0 103 1 12 64 0 278 181 15 10 5 0 2 82 75 20 175 1 0 86 9 4 134 1 0 81 chain 518090 chr3 198295559 + 25931186 25937585 L1PA7 6471 + 3 6450 2363 224 8 0 15 9 24 96 4 16 25 6 0 439 22 7 648 4 0 330 0 4 804 1 2 184 6 0 92 0 3 180 0 4 427 1 0 17 0 1 298 1 0 261 12 0 25 0 20 35 0 1 72 0 1 665 0 7 54 7 8 120 1 3 174 0 1 34 8 9 288 1 4 42 0 2 17 5 9 184 0 4 114 0 6 106 1 0 154 1 10 34 9 9 134 chain 13095 chr3 198295559 + 26045664 26045824 L1PB2 3958 + 3132 3292 64937 160 chain 18473 chr3 198295559 + 26108467 26108696 LTR17 781 + 107 326 58127 202 10 0 17 chain 3455 chr3 198295559 + 26147500 26147540 MER5A1 166 + 38 78 95600 40 chain 254285 chr3 198295559 + 26149059 26152536 L1PB1 5432 + 1595 5094 8127 107 11 8 36 1 0 116 0 1 529 2 1 64 4 5 36 1 0 25 8 13 50 0 3 169 1 2 75 5 0 108 5 6 206 3 14 406 4 7 96 6 5 64 7 8 202 1 0 210 0 4 152 0 8 120 7 5 20 0 1 149 6 8 137 7 0 19 4 0 19 3 6 14 20 20 230 0 3 12 chain 43452 chr3 198295559 + 26315680 26316184 L1PA5 6144 + 5108 5611 32477 271 1 0 232 chain 54536 chr3 198295559 + 26321606 26322210 L1PA3long 6157 + 5019 5627 28035 291 0 4 313 chain 62421 chr3 198295559 + 26362277 26363026 L1P1 4361 + 4 753 25771 695 1 0 4 0 1 49 chain 25103 chr3 198295559 + 26393407 26393778 L1PA8 5853 + 5489 5853 49112 74 2 1 44 4 2 66 22 20 48 1 0 14 4 3 92 chain 174181 chr3 198295559 + 26435525 26437606 L1PA6 6164 + 4058 6162 10889 123 0 1 183 0 4 420 0 12 247 1 0 19 0 1 282 0 2 97 0 1 57 0 2 229 4 5 419 chain 431893 chr3 198295559 + 26464750 26470190 L1PA7 6471 + 1027 6468 4723 120 1 0 4 0 1 7 0 1 34 1 2 96 37 54 1128 2 0 164 1 2 455 7 4 230 0 1 150 5 6 11 1 0 193 3 1 7 0 1 43 2 0 266 3 4 140 0 2 5 2 0 509 0 4 41 13 1 325 4 1 581 1 0 87 4 7 7 3 0 575 0 2 161 3 0 8 chain 298055 chr3 198295559 + 26493435 26497830 L1PA3long 6157 + 1772 6157 6886 769 12 0 514 0 1 37 0 1 83 1 0 1970 0 1 1009 chain 33405 chr3 198295559 + 26516733 26517146 THE1B-int 1605 + 0 415 39171 134 0 1 172 1 2 106 chain 17387 chr3 198295559 + 26542510 26542862 THE1C 375 + 6 351 59374 5 0 3 41 45 37 80 17 18 22 40 37 102 chain 4382 chr3 198295559 + 26556834 26557034 L1MA4 2864 + 2643 2803 88980 18 0 1 9 3 0 15 98 62 19 16 14 22 chain 36159 chr3 198295559 + 26573972 26574384 L1PA3long 6157 + 4174 4594 37306 183 0 4 143 0 4 86 chain 140473 chr3 198295559 + 26730137 26731683 L1PA3long 6157 + 4613 6157 13058 510 0 1 1021 3 0 12 chain 78131 chr3 198295559 + 26747109 26747992 L1PA5 6144 + 5260 6143 22064 883 chain 118667 chr3 198295559 + 26758559 26759884 L1PA4 6152 + 3867 5192 15778 1325 chain 538266 chr3 198295559 + 26783098 26789130 L1PA3long 6157 + 0 6157 1441 152 0 1 211 0 1 403 8 136 2153 2 0 131 0 1 2538 4 0 430 chain 60664 chr3 198295559 + 26813919 26814627 L1PA6 6164 + 5455 6161 26188 44 1 0 28 0 1 303 0 1 322 3 0 7 chain 13824 chr3 198295559 + 26833965 26834306 L1PB1 5432 + 5119 5430 63841 19 1 0 8 15 13 8 2 0 53 2 1 15 1 0 34 94 76 24 1 0 21 1 0 13 1 0 18 2 0 8 chain 320227 chr3 198295559 + 26875517 26879656 L1P3 4156 + 3 4107 6405 248 1 0 68 2 1 84 26 0 102 6 7 225 8 1 684 1 0 4 0 1 467 6 7 449 16 19 130 2 1 126 24 3 66 1 2 7 0 1 142 0 3 242 0 4 141 0 2 23 0 2 169 0 2 46 0 1 4 1 0 7 1 0 414 0 3 196 chain 544019 chr3 198295559 + 26881365 26887510 L1PA3long 6157 + 4 6155 1083 563 0 4 317 1 7 440 16 11 2662 4 0 450 0 3 30 0 2 747 0 1 899 1 0 15 chain 53951 chr3 198295559 + 26887544 26888215 L1PA7 6471 + 5793 6468 28245 44 0 1 298 0 1 45 0 3 138 1 0 145 chain 141629 chr3 198295559 + 26899923 26901497 L1PA4 6152 + 4555 6128 12965 1125 2 0 249 0 1 198 chain 51895 chr3 198295559 + 26928465 26929062 L1PA5 6144 + 5539 6140 28913 442 1 6 6 2 0 87 0 1 59 chain 64327 chr3 198295559 + 26936692 26937417 L1PA4 6152 + 4779 5521 25344 308 0 16 131 0 1 286 chain 372066 chr3 198295559 + 26944101 26948954 L1PA8 5853 + 947 5818 5620 11 7 0 181 1 0 202 0 1 684 19 15 233 8 12 493 2 1 54 3 8 10 5 0 8 2 0 7 1 4 4 1 0 123 5 6 124 65 66 343 0 17 780 0 1 55 0 1 10 1 2 237 0 1 346 1 5 6 0 3 52 0 1 32 1 0 7 0 1 195 0 1 95 0 2 15 2 1 161 1 0 43 3 1 71 1 0 8 20 19 36 2 1 14 5 4 57 chain 38197 chr3 198295559 + 26962996 26963554 MER51A 677 + 0 661 35908 112 0 1 26 1 0 31 4 69 15 28 78 205 4 0 54 8 0 70 chain 83837 chr3 198295559 + 26976984 26977924 L1PA4 6152 + 5030 5968 20837 420 2 0 518 chain 330208 chr3 198295559 + 26991547 26995248 L1PA4 6152 + 2060 5742 6212 1179 1 0 777 23 5 1721 chain 43558 chr3 198295559 + 27001034 27001543 LTR17 781 + 272 781 32408 55 0 1 139 2 1 313 chain 265839 chr3 198295559 + 27001598 27004999 HERV17-int 4347 + 280 3392 7804 319 0 1 54 1 2 88 0 1 717 7 5 10 17 12 589 7 11 50 0 3 45 294 0 77 0 3 422 4 3 700 chain 63306 chr3 198295559 + 27006431 27007232 L1PA7 6471 + 5646 6459 25564 66 3 0 6 6 9 405 1 5 106 0 9 63 4 1 13 0 2 128 chain 70590 chr3 198295559 + 27092907 27093667 L1HS 6032 + 5271 6032 23846 664 0 1 96 chain 16165 chr3 198295559 + 27122120 27122404 THE1D 372 + 80 372 60797 100 17 16 25 9 17 95 24 25 14 chain 386596 chr3 198295559 + 27151291 27157285 L1PB1 5432 + 87 5389 5378 607 0 15 103 12 11 76 9 10 95 1 2 357 12 16 16 1 0 4 18 0 138 0 4 114 0 1 160 0 4 23 319 23 76 13 12 628 0 3 84 4 5 70 0 1 96 2 1 44 0 3 813 2 3 5 1 0 16 353 12 205 0 1 227 13 16 84 0 1 100 21 7 242 3 0 254 0 1 53 8 16 156 55 17 20 2 0 9 16 11 11 3 1 50 2 1 16 1 0 42 2 1 16 1 0 4 28 17 10 8 5 14 6 4 20 1 0 19 chain 80268 chr3 198295559 + 27205155 27206019 L1PA2 6032 + 4315 5179 21578 864 chain 29139 chr3 198295559 + 27212870 27213270 MER51B 395 + 1 395 43135 38 13 0 91 0 2 113 1 0 6 1 2 12 0 1 65 6 10 54 chain 233723 chr3 198295559 + 27230302 27233677 L1PB2 3958 + 25 3838 8642 27 1 0 4 14 10 18 5 0 19 10 5 28 8 6 26 1 0 11 1 0 45 10 7 409 0 8 323 12 28 447 70 74 75 1 4 79 0 1 192 0 423 24 0 1 397 0 1 127 0 1 28 6 7 44 1 0 44 1 0 136 3 28 143 3 0 34 2 0 51 9 7 7 5 0 57 15 13 7 3 0 93 18 5 68 1 0 64 1 0 61 0 11 22 1 0 63 chain 70359 chr3 198295559 + 27339269 27340523 L1PA8 5853 + 4916 5853 23899 94 2 0 123 309 0 209 8 9 213 1 0 45 2 0 65 33 31 35 2 1 16 4 3 93 chain 4261 chr3 198295559 + 27431031 27431142 MADE1 96 - 0 96 89755 23 21 3 19 18 21 30 chain 87638 chr3 198295559 + 27531244 27532269 LTR5B 1012 + 0 1012 20113 131 21 7 380 0 1 493 chain 25704 chr3 198295559 + 27560974 27561284 AluY 311 + 0 306 48163 51 5 0 75 0 1 179 chain 30587 chr3 198295559 + 27599001 27599425 LTR7B 505 + 0 497 41479 108 0 10 65 4 67 5 1 0 23 0 2 85 1 0 21 0 1 54 18 17 39 chain 47614 chr3 198295559 + 27600545 27601172 HERVH-int 3825 + 2970 3825 30431 46 1 0 335 6 0 7 3 9 46 4 231 38 0 2 141 chain 30491 chr3 198295559 + 27602699 27603149 LTR7B 505 + 0 491 41583 108 0 10 59 0 38 10 34 27 26 0 2 85 5 4 70 16 15 37 chain 24075 chr3 198295559 + 27609442 27609836 MER39B 650 + 11 423 50693 38 21 27 21 29 28 97 17 8 33 0 22 138 chain 24512 chr3 198295559 + 27673729 27674100 THE1D 372 + 0 372 50004 31 0 1 22 18 19 101 1 0 8 17 18 140 1 0 32 chain 11822 chr3 198295559 + 27679535 27679680 MER44A 345 + 126 271 67166 145 chain 264865 chr3 198295559 + 27690182 27694361 L1MA1 4479 + 236 4136 7828 44 9 7 225 6 6 136 1 0 18 4 7 21 0 4 29 10 19 12 0 3 23 4 0 22 0 5 142 0 3 6 3 0 5 4 0 14 12 16 116 2 1 131 0 6 48 0 4 367 2 3 61 0 6 224 20 54 58 3 4 64 4 0 326 1 4 114 36 14 59 2 1 25 0 1 5 9 12 58 8 6 26 4 3 68 1 0 86 1 0 18 25 23 159 2 0 17 4 0 41 1 2 33 1 0 12 4 0 52 6 0 7 1 2 56 2 1 7 2 0 132 2 0 107 0 27 14 1 0 47 1 0 24 2 0 8 1 2 6 1 0 42 0 1 28 1 0 19 3 1 13 314 0 64 3 4 6 1 0 12 50 46 87 1 0 29 2 0 29 chain 25234 chr3 198295559 + 27704673 27704988 MLT2A2 560 + 232 560 48893 170 0 11 121 1 3 23 chain 36897 chr3 198295559 + 27744102 27744508 L1PA3long 6157 + 5751 6157 36819 406 chain 34259 chr3 198295559 + 27828665 27829137 LTR10F 562 + 0 562 38520 125 11 70 35 0 24 12 4 10 99 2 5 85 8 6 91 chain 294009 chr3 198295559 + 27854101 27858241 L1PA11 4918 + 670 4486 7010 690 324 0 85 3 8 360 4 1 70 0 1 92 0 2 40 0 1 72 30 9 60 0 1 15 0 3 15 2 1 12 0 1 38 5 1 11 0 1 47 1 2 236 7 9 764 0 2 59 0 4 92 9 10 133 6 0 6 0 6 43 0 1 16 0 4 40 0 7 590 5 0 62 2 1 81 2 0 11 chain 2641 chr3 198295559 + 27938533 27938597 Tigger3a 397 + 58 171 102782 17 21 70 26 chain 25006 chr3 198295559 + 28023548 28023896 THE1A 353 + 6 353 49267 7 2 0 31 10 11 39 1 0 14 18 17 24 0 2 202 chain 117345 chr3 198295559 + 28023897 28025737 THE1A-int 1579 + 1 1567 15990 20 1 9 533 0 1 53 0 1 18 9 12 4 1 0 4 0 1 62 17 26 42 4 1 467 293 0 312 chain 540714 chr3 198295559 + 28059247 28065261 L1PA3long 6157 + 4 6157 1299 148 0 1 624 1 129 592 5 12 3259 0 1 819 5 0 408 6 5 136 0 8 11 chain 49582 chr3 198295559 + 28065272 28065881 L1PA7 6471 + 5833 6445 29735 63 0 1 234 0 1 165 11 12 136 chain 41935 chr3 198295559 + 28093579 28094115 MER41A 554 + 1 547 33403 76 11 16 376 2 7 71 chain 16792 chr3 198295559 + 28159506 28159731 L1MA4 2864 + 2436 2664 60041 61 3 2 64 0 4 97 chain 5130 chr3 198295559 + 28164444 28164513 L1PB4 2604 + 2383 2453 85017 27 2 3 40 chain 30762 chr3 198295559 + 28174269 28174797 L1PB1 5432 + 4935 5420 41339 168 9 0 14 3 0 21 1 0 5 31 24 52 1 0 17 1 0 44 1 0 16 14 1 8 0 1 21 3 1 4 1 0 16 2 0 22 1 0 21 1 0 13 1 0 16 chain 168786 chr3 198295559 + 28182532 28184507 L1PA5 6144 + 2821 6144 11164 108 2 0 82 1 2 496 2 0 709 3 1353 320 8 9 244 chain 159016 chr3 198295559 + 28203597 28205860 L1PA10 4194 + 337 2587 11807 19 1 0 6 9 7 11 5 0 5 3 0 9 10 0 9 1 0 21 30 31 19 0 4 10 2 0 16 33 42 836 0 1 9 2 1 49 7 6 352 1 3 421 0 3 106 6 0 115 33 32 107 chain 36233 chr3 198295559 + 28220957 28221361 L1PA4 6152 + 5732 6143 37250 34 0 6 236 0 1 134 chain 244585 chr3 198295559 + 28354166 28357016 L1PA5 6144 + 3292 6144 8364 193 0 3 12 5 4 404 0 1 440 1 5 580 0 1 255 7 5 274 2 0 663 3 1 11 chain 383814 chr3 198295559 + 28399507 28405017 L1PB1 5432 + 24 5420 5415 38 0 2 131 9 12 337 2 1 56 2 1 153 17 11 20 0 1 607 2 1 7 323 0 188 0 188 306 8 14 44 0 7 274 0 4 66 7 0 103 1 0 226 1 20 44 0 3 214 0 1 22 21 25 112 0 1 462 5 10 226 0 1 234 0 1 282 15 21 23 1 5 21 1 0 81 0 4 44 0 1 97 0 1 34 1 4 162 1 0 5 0 1 115 12 6 10 1 0 19 1 0 13 1 0 11 4 0 9 2 0 68 2 1 44 1 0 16 25 12 19 29 24 19 1 0 21 2 1 12 1 0 16 chain 2991 chr3 198295559 + 28406241 28406276 MLT-int 841 + 86 121 99947 35 chain 244261 chr3 198295559 + 28417068 28419902 L1PA4 6152 + 3203 5969 8372 60 45 33 1681 70 4 338 0 1 204 0 10 284 1 0 151 chain 111302 chr3 198295559 + 28428993 28430597 THE1C-int 1605 + 0 1595 16905 14 3 2 91 5 59 205 1 0 56 0 1 10 96 18 106 0 1 64 22 22 101 0 9 15 7 8 499 18 21 61 1 3 30 1 0 113 0 1 85 chain 18999 chr3 198295559 + 28430607 28430989 THE1C 375 + 0 375 57555 15 2 0 32 89 92 47 28 20 169 chain 35264 chr3 198295559 + 28469746 28470212 L1MA2 4263 + 738 1205 37853 168 9 0 7 0 9 78 0 1 204 chain 32934 chr3 198295559 + 28489844 28490413 L1PA15 4387 + 3671 4249 39562 60 0 4 50 19 35 68 13 11 28 6 5 117 1 0 5 12 14 36 2 1 25 4 3 22 9 8 22 1 0 21 4 0 11 1 0 32 chain 62745 chr3 198295559 + 28494530 28495208 L1PA2 6032 + 3969 4647 25697 678 chain 4058 chr3 198295559 + 28520482 28520530 MER58A 224 + 34 83 91027 4 0 1 44 chain 21836 chr3 198295559 + 28522022 28522262 L1PA5 6144 + 5892 6132 54057 240 chain 32590 chr3 198295559 + 28529080 28530143 L1PA7 6471 + 5884 6459 39872 74 510 0 339 22 22 100 0 22 18 chain 5610 chr3 198295559 + 28543463 28543711 ERVL-B4-int 2334 + 200 448 82764 38 86 85 19 42 44 25 17 16 21 chain 211573 chr3 198295559 + 28620773 28623247 L1PA6 6164 + 2186 4668 9300 137 3 2 42 0 2 19 1 0 4 0 1 434 0 1 292 0 1 389 0 3 228 1 2 621 0 1 303 chain 9104 chr3 198295559 + 28675748 28675941 MSTA 426 + 199 402 72337 16 57 59 26 10 18 84 chain 34014 chr3 198295559 + 28689887 28690265 L1PA3long 6157 + 3035 3414 38698 94 0 1 284 chain 14157 chr3 198295559 + 28707505 28707720 MER30 238 + 0 234 63370 16 16 23 68 6 21 71 3 0 35 chain 25232 chr3 198295559 + 28721790 28722129 THE1C 375 + 0 342 48895 85 5 6 95 1 0 17 0 3 136 chain 253588 chr3 198295559 + 28750301 28753705 L1PA11 4918 + 1103 4495 8146 68 3 0 133 1 0 114 0 4 277 2 1 4 0 1 110 4 1 187 0 1 93 1 3 33 18 16 97 2 0 265 1 0 209 2 0 577 0 1 15 1 2 21 1 0 63 8 11 115 1 2 16 4 0 117 1 0 30 0 1 521 0 3 6 8 5 32 23 24 45 1 0 14 0 1 51 2 1 12 3 0 66 2 0 16 1 0 7 chain 14264 chr3 198295559 + 28764041 28764213 Tigger3 1187 + 332 505 63248 155 0 1 17 chain 2869 chr3 198295559 + 28959299 28959331 MER52C 1267 + 941 973 101076 32 chain 3509 chr3 198295559 + 28959340 28959380 MER52C 1267 + 874 914 95175 40 chain 253026 chr3 198295559 + 28960044 28962876 L1PA4 6152 + 3315 6152 8156 871 0 3 446 1 0 5 2 0 1201 0 6 51 1 0 254 chain 81104 chr3 198295559 + 28996854 28999050 L1PA5 6144 + 3934 6129 21412 818 10 0 539 0 4 778 11 16 40 chain 14413 chr3 198295559 + 29007586 29007769 L1PA16 3655 + 3379 3563 63013 36 6 7 141 chain 15370 chr3 198295559 + 29031143 29031309 L1PA4 6152 + 5970 6136 61831 166 chain 21247 chr3 198295559 + 29040999 29041383 THE1B 368 + 2 368 54824 44 0 1 53 7 5 64 61 45 18 1 0 7 14 13 14 0 1 101 chain 153379 chr3 198295559 + 29058456 29060540 L1PB1 5432 + 2433 4510 12155 60 9 0 346 9 0 89 0 2 24 10 26 43 1 0 475 0 16 47 1 0 169 33 1 175 1 2 241 9 15 307 0 4 35 chain 58902 chr3 198295559 + 29090101 29090940 L1PREC2 3366 + 1258 2090 26691 41 12 16 28 4 3 27 5 6 212 14 0 94 1 0 5 0 1 98 0 1 4 13 14 211 0 1 70 chain 107966 chr3 198295559 + 29130597 29132130 L1PA3long 6157 + 4920 6157 17332 158 0 6 220 0 4 18 2 1 585 306 0 26 0 1 218 chain 26256 chr3 198295559 + 29212521 29212888 THE1B 368 + 0 368 47346 15 2 0 22 0 5 39 1 2 89 3 2 24 3 1 169 chain 5748 chr3 198295559 + 29369341 29369421 MADE1 96 + 0 96 82134 42 1 17 37 chain 20704 chr3 198295559 + 29374449 29374704 MER47A 366 + 59 314 55495 255 chain 17653 chr3 198295559 + 29483095 29483295 AluY 311 + 72 269 59063 46 3 0 151 chain 4372 chr3 198295559 + 29531175 29531293 MER5A1 166 + 0 125 89046 14 15 19 25 32 35 32 chain 74955 chr3 198295559 + 29592300 29593171 L1PA5 6144 + 5277 6140 22853 26 6 5 681 7 0 151 chain 11413 chr3 198295559 + 29619093 29619262 L1PA8A 6298 + 6125 6288 67888 28 6 0 26 1 8 9 7 0 92 chain 507151 chr3 198295559 + 29670285 29676431 L1PA5 6144 + 0 6140 2883 124 1 15 438 0 1 374 25 0 217 9 0 483 3 0 746 0 1 29 6 9 83 0 3 182 4 33 90 0 4 370 7 1 299 0 1 838 0 4 123 25 22 262 22 0 364 1 0 397 0 3 624 chain 19014 chr3 198295559 + 29702172 29702871 LTR12C 1709 + 657 1519 57537 175 370 564 67 62 31 25 chain 5391 chr3 198295559 + 29712625 29713021 MLT2B2 565 + 115 553 83741 43 163 168 17 33 83 24 90 77 26 chain 243421 chr3 198295559 + 29725326 29728366 L1PA8 5853 + 2802 5847 8390 161 4 0 33 0 1 74 1 12 310 0 1 655 0 2 47 4 6 144 10 1 91 2 1 643 0 4 21 0 2 69 0 2 438 0 1 43 1 0 44 2 0 70 3 1 55 9 8 18 1 0 87 chain 148390 chr3 198295559 + 29785569 29787828 L1PB1 5432 + 3188 5423 12462 90 0 1 13 8 9 87 0 1 281 4 5 61 0 1 18 14 18 189 12 5 31 2 3 156 1 2 37 2 3 32 0 1 63 1 2 259 0 7 33 8 13 15 3 0 188 3 1 290 23 21 14 1 0 6 1 0 12 24 7 5 2 0 22 0 5 25 15 17 44 1 0 15 71 54 20 1 0 22 1 0 12 1 0 10 1 0 9 chain 7213 chr3 198295559 + 29851810 29851959 L1PA13 3608 + 3346 3488 76903 25 28 25 35 0 1 11 2 0 5 2 0 18 2 1 21 chain 11803 chr3 198295559 + 29863173 29863307 L1PA5 6144 + 5940 6073 67203 57 1 0 76 chain 6092 chr3 198295559 + 29863317 29863388 L1PA5 6144 + 6073 6144 80764 71 chain 526333 chr3 198295559 + 29993927 29999918 L1PA4 6152 + 10 6151 1985 121 0 2 22 1 2 423 1 0 191 1 129 505 0 9 385 3 0 1134 0 1 1422 0 4 632 4 0 291 1 9 459 0 5 395 chain 83512 chr3 198295559 + 30000000 30001046 L1PA7 6471 + 5417 6467 20912 15 10 9 180 0 3 74 0 2 431 0 1 132 0 2 9 13 12 109 4 2 69 chain 12754 chr3 198295559 + 30021357 30021643 L1PB1 5432 + 5158 5403 65513 11 2 0 13 6 4 33 1 0 18 1 0 44 1 0 12 28 15 19 38 19 24 1 0 21 1 0 12 chain 125954 chr3 198295559 + 30040176 30041857 L1PA10 4194 + 2142 3835 14565 48 0 5 428 0 1 30 1 0 112 1 2 138 9 11 214 4 1 126 1 2 44 5 7 26 17 19 293 0 2 184 chain 47687 chr3 198295559 + 30049923 30050507 L1P1 4361 + 1 599 30403 136 10 24 438 chain 479364 chr3 198295559 + 30050749 30056092 L1PA4 6152 + 621 5970 3651 256 0 1 1441 0 1 207 0 3 198 0 1 3241 chain 61843 chr3 198295559 + 30085355 30086116 MER4E1 777 + 0 770 25908 23 1 0 73 0 1 56 0 3 67 2 1 319 8 15 212 chain 18795 chr3 198295559 + 30095615 30095864 L1PA6 6164 + 5912 6162 57785 92 18 17 124 1 3 14 chain 115206 chr3 198295559 + 30126897 30128389 L1PA8 5853 + 4365 5853 16357 77 2 0 145 10 11 411 0 2 17 2 1 5 0 1 147 0 1 255 3 4 124 1 0 43 2 0 69 2 1 10 1 0 51 2 1 18 3 2 92 chain 7311 chr3 198295559 + 30132985 30133077 MLT1B 390 + 35 128 76630 55 0 1 37 chain 49238 chr3 198295559 + 30201268 30201852 L1PA8 5853 + 4377 4961 29852 584 chain 101307 chr3 198295559 + 30244539 30245658 L1PA2 6032 + 4906 6032 18152 198 0 1 904 0 6 17 chain 79025 chr3 198295559 + 30279442 30280524 MER41-int 2638 + 1545 2632 21865 35 13 12 44 1 2 57 1 0 161 0 1 19 2 0 32 9 7 111 1 2 4 1 0 194 3 5 32 0 1 143 0 5 55 4 5 160 chain 46062 chr3 198295559 + 30280537 30281091 MER41A 554 + 0 554 31036 554 chain 25724 chr3 198295559 + 30338252 30338537 L1P1 4361 + 3601 3886 48133 285 chain 74740 chr3 198295559 + 30365334 30366162 L1PA3long 6157 + 5330 6157 22907 386 1 0 441 chain 15169 chr3 198295559 + 30396196 30396393 THE1B 368 + 174 368 62076 117 3 0 77 chain 172260 chr3 198295559 + 30412411 30414283 L1PA2 6032 + 3173 5045 10987 1872 chain 423111 chr3 198295559 + 30428649 30433439 L1PA4 6152 + 1174 5969 4838 1139 0 2 138 2 0 620 0 1 102 2 1 104 6 5 654 0 1 296 0 1 113 0 4 1614 chain 9581 chr3 198295559 + 30467567 30467754 Tigger3a 397 + 61 270 71307 21 33 56 36 14 13 83 chain 20134 chr3 198295559 + 30550269 30550841 LTR35A 463 + 0 463 56213 13 4 0 30 12 0 14 123 30 26 50 25 31 3 1 39 2 0 10 1 0 10 0 34 12 56 52 136 chain 21166 chr3 198295559 + 30679858 30680119 AluSg7 307 + 13 275 54927 111 1 2 149 chain 59393 chr3 198295559 + 30820664 30821338 L1PA3long 6157 + 5489 6156 26539 372 1 0 26 1 0 106 5 1 10 1 0 152 chain 15948 chr3 198295559 + 30825663 30825932 L1PA8 5853 + 5585 5847 61095 19 8 7 52 2 0 16 1 0 9 4 3 43 12 11 15 1 0 87 chain 84747 chr3 198295559 + 30929858 30930945 L1PA8 5853 + 4762 5853 20674 237 1 0 11 2 0 43 1 0 4 0 1 26 0 2 9 1 4 50 0 10 228 1 0 177 1 0 45 3 1 69 13 11 53 1 0 17 1 0 93 chain 4185 chr3 198295559 + 30958825 30958875 LTR67B 553 + 55 104 90232 20 1 0 29 chain 4711 chr3 198295559 + 30985274 30985332 MER134 117 + 4 62 87195 58 chain 268401 chr3 198295559 + 31043677 31047417 MER61-int 3695 + 1 3695 7750 49 1 0 55 0 1 92 39 0 73 2 1 22 4 1 31 34 31 29 1 0 25 27 13 44 4 0 71 0 4 94 2 1 6 1 0 135 0 3 65 14 12 5 0 1 87 0 1 140 0 1 28 0 5 30 0 1 4 1 5 79 9 2 145 1 3 44 0 1 143 2 0 5 0 3 27 0 5 155 6 7 64 8 6 90 14 16 174 2 0 48 1 4 198 0 1 13 0 1 267 0 1 7 2 9 80 1 0 88 14 13 34 1 0 213 13 11 29 2 0 47 3 0 147 0 1 342 2 0 5 chain 3520 chr3 198295559 + 31114843 31114880 MLT1B 390 + 51 88 95102 37 chain 8249 chr3 198295559 + 31226197 31226315 MER58D 378 + 252 367 74294 46 9 6 63 chain 31431 chr3 198295559 + 31228988 31229460 L1MA2 4263 + 3617 4079 40787 45 1 0 120 0 3 11 13 10 150 11 9 36 0 1 56 13 6 11 1 0 4 chain 3975 chr3 198295559 + 31287026 31287068 MLT2D 439 + 395 437 91604 42 chain 100326 chr3 198295559 + 31337061 31338511 L1MA2 4263 + 2699 4140 18259 210 1 3 111 1 0 171 0 1 48 0 1 43 0 1 7 1 0 25 13 22 224 1 0 7 17 14 15 0 1 58 2 1 147 3 0 149 11 9 79 19 12 47 25 20 15 chain 2793 chr3 198295559 + 31430045 31430136 L1MC3 1789 + 168 257 101683 21 20 14 20 18 22 12 chain 13259 chr3 198295559 + 31545730 31545927 MER30 238 + 0 238 64690 12 7 25 58 7 24 34 0 6 79 chain 120937 chr3 198295559 + 31605727 31607313 THE1B-int 1605 + 0 1599 15356 84 6 2 11 2 3 313 1 0 10 4 28 138 1 2 80 1 2 32 5 4 822 8 0 68 chain 15246 chr3 198295559 + 31607320 31607643 THE1B 368 + 3 362 61987 86 62 64 24 43 76 37 0 2 16 1 0 54 chain 7315 chr3 198295559 + 31619134 31619263 Tigger4a 237 + 45 164 76622 12 17 0 50 5 12 45 chain 5681 chr3 198295559 + 31674086 31674163 MSTB1 431 + 23 102 82426 37 2 4 38 chain 24644 chr3 198295559 + 31689528 31689884 THE1B 368 + 0 364 49808 131 8 11 27 1 0 15 2 3 5 2 0 114 5 13 21 1 0 24 chain 25310 chr3 198295559 + 31746695 31746985 L1PA4 6152 + 5863 6152 48768 139 1 0 150 chain 52239 chr3 198295559 + 31771283 31771931 PABL_B 668 + 0 668 28804 281 1 0 7 0 1 63 1 0 70 0 21 124 1 0 4 0 1 96 chain 14546 chr3 198295559 + 31783160 31783500 L1PB1 5432 + 5117 5426 62844 21 1 0 6 1 0 14 5 1 9 3 1 51 23 21 40 1 0 11 32 21 13 3 1 5 1 0 14 2 0 24 1 0 20 11 9 23 1 0 4 chain 131707 chr3 198295559 + 31869938 31871523 LTR12C 1709 + 0 1709 13855 290 0 1 6 0 1 112 0 3 56 0 1 180 0 119 68 7 6 77 1 0 191 1 0 6 3 1 106 0 4 481 chain 37913 chr3 198295559 + 31888051 31888626 L1MA5A 2387 + 972 1557 36126 69 2 1 160 15 24 54 1 0 67 9 5 43 17 16 25 0 4 99 0 5 5 1 0 8 chain 539210 chr3 198295559 + 32010465 32016595 L1PA4 6152 + 10 6141 1387 1254 3 0 164 5 6 317 0 1 763 1 0 1815 0 1 661 4 0 312 0 4 146 0 1 583 0 1 102 chain 3029 chr3 198295559 + 32028828 32028860 MSTC 436 + 6 38 99499 32 chain 16099 chr3 198295559 + 32029172 32029528 MER50 708 + 441 690 60894 40 1 0 11 29 30 43 107 0 125 chain 15388 chr3 198295559 + 32043727 32043966 L1PA16 3655 + 3403 3619 61802 12 0 1 99 0 2 61 3 0 14 18 0 11 5 0 16 chain 57518 chr3 198295559 + 32052315 32054520 MER41-int 2638 + 111 1046 27097 43 659 29 26 8 5 15 2 0 19 1 0 7 4 0 30 12 8 44 12 25 89 4 9 30 1 0 237 0 2 80 663 14 83 0 4 82 8 9 31 1 0 14 chain 45986 chr3 198295559 + 32052376 32052960 L1PA8 5853 + 5266 5845 31069 191 0 1 104 1 0 46 2 0 65 7 6 61 2 1 19 1 0 85 chain 25776 chr3 198295559 + 32063579 32063949 THE1D 372 + 0 372 48060 162 0 1 17 43 44 148 chain 28664 chr3 198295559 + 32067466 32067914 LTR7B 505 + 0 491 43853 108 0 11 65 6 13 20 0 1 7 21 16 8 0 31 81 11 10 65 19 18 37 chain 30382 chr3 198295559 + 32075775 32076504 LTR7B 505 + 0 505 41689 108 0 10 57 15 77 26 0 2 85 1 0 19 297 1 56 14 13 51 chain 8506 chr3 198295559 + 32096934 32097039 MLT1A1 405 + 7 113 73665 29 0 1 76 chain 25649 chr3 198295559 + 32102177 32102590 LTR14A 344 + 0 344 48246 45 3 0 8 41 0 58 31 0 151 0 5 4 0 1 72 chain 10960 chr3 198295559 + 32102944 32103105 LTR39 781 + 7 172 68606 17 16 20 128 chain 134663 chr3 198295559 + 32169098 32170610 SVA_D 2077 + 42 2074 13577 649 1 41 8 0 37 138 1 138 26 0 3 16 0 303 673 chain 4720 chr3 198295559 + 32172654 32172715 U13_ 108 + 0 61 87126 61 chain 492627 chr3 198295559 + 32262998 32268603 L1PA5 6144 + 0 6143 3355 93 33 558 215 0 2 1007 3 0 123 0 2 313 1 0 1699 0 1 336 0 4 944 0 4 62 7 9 98 0 2 671 chain 42148 chr3 198295559 + 32270289 32270767 L1PA4 6152 + 5560 6038 33278 478 chain 9910 chr3 198295559 + 32270767 32270879 L1PA4 6152 + 6039 6151 70595 112 chain 3239 chr3 198295559 + 32279995 32280033 L1P1 4361 + 2521 2559 97579 38 chain 2825 chr3 198295559 + 32334280 32334314 L1MC2 1988 + 1953 1988 101436 4 0 1 30 chain 3131 chr3 198295559 + 32383077 32383113 MLT1G3 592 + 5 41 98539 36 chain 5979 chr3 198295559 + 32547785 32547867 L1MA8 2339 + 1823 1901 81163 17 4 0 61 chain 2940 chr3 198295559 + 32579231 32579782 LTR12E 1234 + 732 1044 100505 26 30 26 15 456 221 24 chain 7516 chr3 198295559 + 32605411 32605507 MER67C 710 + 347 442 76090 15 1 0 80 chain 3029 chr3 198295559 + 32610775 32610807 LTR67B 553 + 50 82 99517 32 chain 111851 chr3 198295559 + 32625470 32627120 LTR12C 1709 + 0 1693 16829 18 0 14 27 25 25 183 1 0 6 10 6 95 0 11 79 0 3 6 23 19 158 0 119 57 12 11 275 1 0 8 2 0 104 11 4 144 112 24 43 0 1 70 0 4 36 0 1 11 1 0 63 1 0 68 chain 5705 chr3 198295559 + 32626720 32626827 LTR12C 1709 + 1373 1498 79853 7 0 17 33 9 10 58 chain 4132 chr3 198295559 + 32646339 32646424 MER34C_ 573 + 414 500 90566 28 24 25 33 chain 28007 chr3 198295559 + 32647303 32647626 L1PA5 6144 + 5802 6135 44855 133 0 10 190 chain 3815 chr3 198295559 + 32651422 32651489 Tigger3b 1229 + 0 97 92748 16 9 39 42 chain 25664 chr3 198295559 + 32661173 32661518 L1PA8 5853 + 5506 5853 48222 58 1 0 9 1 0 36 2 0 71 7 15 45 2 1 21 1 0 91 chain 128225 chr3 198295559 + 32663469 32664873 SVA_D 2077 + 29 2061 14250 769 0 615 30 0 2 9 0 1 274 0 10 322 chain 2953 chr3 198295559 + 32684065 32684098 L1MC3 1789 + 1337 1370 100336 33 chain 3130 chr3 198295559 + 32754844 32754879 MER66B 489 + 295 330 98544 35 chain 37829 chr3 198295559 + 32776979 32777507 MER41A 554 + 0 554 36183 85 12 5 32 1 4 99 1 9 193 0 1 41 26 47 38 chain 18687 chr3 198295559 + 32823827 32824051 AluSc 308 + 36 257 57910 92 3 0 129 chain 15863 chr3 198295559 + 32854965 32855208 MER44A 345 + 107 345 61214 27 19 11 33 0 3 12 1 0 120 0 1 31 chain 136477 chr3 198295559 + 32902611 32904375 LTR12C 1709 + 0 1709 13393 436 0 1 169 24 6 225 1 0 15 78 0 25 0 18 216 1 0 5 3 1 107 0 4 52 0 23 157 5 4 245 chain 7007 chr3 198295559 + 32903481 32903559 LTR12C 1709 + 734 812 60144 78 chain 13404 chr3 198295559 + 32928752 32929698 THE1B 368 + 0 349 64461 44 0 15 49 4 3 50 748 137 51 chain 119010 chr3 198295559 + 32929719 32931287 THE1B-int 1605 + 0 1600 15695 113 1 4 123 0 1 190 0 25 88 0 3 274 1 2 27 0 8 152 0 13 12 23 10 30 10 0 453 0 1 71 chain 23268 chr3 198295559 + 32931292 32931617 THE1B 368 + 0 357 51977 44 11 47 81 1 0 30 2 0 91 1 0 64 chain 130017 chr3 198295559 + 32939500 32941148 LTR12C 1709 + 0 1702 14036 437 0 1 223 8 10 141 0 40 259 1 0 6 2 0 107 0 4 56 0 1 96 2 4 126 3 5 5 3 0 32 23 30 49 0 1 69 chain 23871 chr3 198295559 + 32955274 32955555 AluSp 311 + 20 300 50994 105 1 0 175 chain 19449 chr3 198295559 + 32966660 32966960 THE1B 368 + 0 310 57090 105 8 9 55 1 0 19 9 12 10 0 4 10 7 6 69 0 4 7 chain 10363 chr3 198295559 + 32967538 32967674 LTR15 485 + 347 480 69684 35 3 4 50 4 0 44 chain 38234 chr3 198295559 + 32972750 32973222 LTR15 485 + 2 480 35885 100 0 1 4 3 7 167 0 4 64 0 1 87 4 0 43 chain 5458 chr3 198295559 + 33069412 33069555 LTR37B 484 + 8 154 83414 53 60 63 30 chain 23620 chr3 198295559 + 33103026 33103314 7SLRNA 320 + 19 307 51398 288 chain 23800 chr3 198295559 + 33181002 33181905 Tigger3b 1229 + 576 1175 51105 14 0 1 7 0 2 17 0 142 12 124 0 108 401 64 37 0 10 90 30 32 63 chain 5934 chr3 198295559 + 33399523 33399611 L1MD2 1676 + 1408 1496 81343 7 0 1 25 5 4 51 chain 4737 chr3 198295559 + 33434987 33435095 MER58C 217 + 79 213 87046 7 1 0 26 23 49 39 1 2 11 chain 43132 chr3 198295559 + 33446461 33447026 LTR12C 1709 + 1177 1709 32693 26 25 0 21 11 4 384 14 13 84 chain 121687 chr3 198295559 + 33453276 33454987 LTR12C 1709 + 0 1709 15231 121 3 13 242 9 4 84 6 4 149 0 12 50 41 0 158 1 0 238 0 49 84 46 20 282 0 4 65 12 11 22 47 46 51 chain 3333 chr3 198295559 + 33453940 33453981 LTR12C 1709 + 798 838 42594 39 1 0 1 chain 55308 chr3 198295559 + 33462946 33464809 MER4E1 777 + 0 768 27774 188 0 1 105 1 2 69 2 1 22 3 2 28 1116 11 34 0 1 46 1 0 31 1 9 203 0 2 13 chain 6692 chr3 198295559 + 33478677 33478758 L1MA5A 2387 + 829 910 78666 81 chain 80932 chr3 198295559 + 33511713 33512570 L1HS 6032 + 5175 6032 21449 857 chain 29000 chr3 198295559 + 33514618 33515210 L1PB1 5432 + 4910 5422 43317 25 0 1 178 50 0 21 1 0 11 1 0 9 8 4 9 2 0 5 7 6 41 2 1 10 6 5 35 0 1 8 1 0 16 1 0 4 19 8 18 34 29 15 1 0 22 1 0 12 1 0 18 chain 4857 chr3 198295559 + 33605491 33605548 MER96 175 - 110 167 86386 57 chain 8142 chr3 198295559 + 33612791 33613034 L1MA4 2864 + 2596 2810 74538 30 0 2 11 2 0 26 16 13 16 1 0 7 93 68 41 chain 553889 chr3 198295559 + 33671454 33677712 L1PA3long 6157 + 1 6157 490 1185 4 7 1816 1 9 219 1 0 709 0 1 413 0 4 306 0 1 247 120 0 1195 0 2 42 chain 31300 chr3 198295559 + 33711636 33712150 L1PB2 3958 + 3330 3838 40896 30 0 3 11 9 0 64 3 1 12 4 0 92 16 15 8 3 0 4 1 0 37 10 27 27 2 0 20 2 1 64 12 10 19 1 0 63 chain 3229 chr3 198295559 + 33720477 33720511 MLT2B1 522 + 488 522 97681 34 chain 4253 chr3 198295559 + 33743259 33743409 L1MC4 1079 + 842 979 89804 36 83 71 24 1 0 6 chain 40395 chr3 198295559 + 33765668 33767082 L1MA1 4479 + 3360 4190 34387 29 3 0 12 1 0 35 615 45 11 1 0 28 3 0 39 0 1 39 4 28 89 2 1 22 2 0 17 1 0 4 10 12 49 13 12 12 2 0 102 1 0 5 3 0 54 95 85 16 2 0 35 1 0 9 1 0 5 3 0 14 5 0 20 chain 30994 chr3 198295559 + 33765816 33766247 L1PA8A 6298 + 5881 6291 41131 307 39 18 85 chain 6047 chr3 198295559 + 33878581 33878674 LTR21B 408 + 307 402 80901 39 12 14 42 chain 7065 chr3 198295559 + 33949379 33949541 LTR16A1 462 + 259 416 77390 61 59 56 35 2 0 5 chain 31005 chr3 198295559 + 33983222 33983641 L1PA8 5853 + 5437 5850 41117 127 1 0 44 2 0 70 2 1 9 1 0 11 13 14 27 2 1 19 1 0 90 chain 188255 chr3 198295559 + 34058948 34061479 L1PA7 6471 + 4158 6450 10198 135 0 1 144 0 5 648 6 7 80 0 1 100 0 4 35 0 1 283 15 9 184 247 0 343 0 1 311 chain 483088 chr3 198295559 + 34094086 34099591 L1PA4 6152 + 13 5519 3573 1023 1 0 2735 2 3 800 0 1 944 chain 115994 chr3 198295559 + 34126534 34128423 L1PA11 4918 + 3004 4578 16236 180 16 15 341 0 1 51 313 10 58 1 0 99 0 10 562 1 0 62 2 1 13 2 0 7 4 3 55 2 0 16 1 0 20 1 0 9 31 22 15 1 0 13 2 0 11 chain 39777 chr3 198295559 + 34144616 34145117 LTR10F 562 + 2 562 34839 121 0 4 46 0 21 23 0 14 10 0 24 8 4 0 289 chain 7938 chr3 198295559 + 34166357 34166451 L1PA8A 6298 + 6197 6291 75031 94 chain 41993 chr3 198295559 + 34304931 34305469 LTR12_ 688 + 0 688 33360 144 0 24 38 0 1 4 0 3 6 11 0 247 0 133 88 chain 38179 chr3 198295559 + 34343994 34344684 L1MA2 4263 + 3462 4102 35925 15 8 6 24 0 1 74 2 0 8 2 0 72 1 0 7 15 0 34 10 0 26 20 13 16 20 20 18 15 12 148 11 9 93 22 15 29 chain 118796 chr3 198295559 + 34369875 34371407 THE1A-int 1579 + 0 1574 15748 83 0 1 567 0 2 165 1 0 96 3 5 198 16 17 38 0 1 172 0 36 193 chain 19534 chr3 198295559 + 34391318 34391625 L1PB3 3668 + 3274 3559 56979 16 1 0 101 1 0 87 23 7 18 2 0 25 3 1 30 chain 4045 chr3 198295559 + 34404436 34404485 MLT1E1A 663 + 507 558 91122 26 0 2 23 chain 6902 chr3 198295559 + 34517301 34517404 L1PA16 3655 + 3484 3584 77947 19 1 3 5 2 0 66 3 0 7 chain 120783 chr3 198295559 + 34560397 34561769 L1PA5 6144 + 4771 6142 15380 251 1 0 967 8 8 145 chain 6626 chr3 198295559 + 34597722 34597861 L1MB2 1706 + 1003 1138 78879 62 24 26 14 12 6 27 chain 44235 chr3 198295559 + 34616535 34617117 L1PA8A 6298 + 5493 6061 31992 10 0 1 29 14 0 107 22 21 400 chain 250113 chr3 198295559 + 34654022 34656689 L1HS 6032 + 2190 4857 8234 2667 chain 38732 chr3 198295559 + 34679070 34679557 HERV1_LTRc 486 + 0 480 35539 27 3 0 65 1 2 337 6 1 48 chain 40924 chr3 198295559 + 34686535 34687025 HERV1_LTRc 486 + 0 486 34014 82 0 1 346 5 0 57 chain 4828 chr3 198295559 + 34692993 34693052 MLT1A 405 + 312 371 86551 59 chain 29226 chr3 198295559 + 34707012 34707560 L1PA11 4918 + 3967 4517 43007 138 26 27 123 55 67 6 5 0 67 1 0 4 7 11 5 3 0 60 4 3 10 1 0 20 4 0 9 chain 206307 chr3 198295559 + 34733670 34736579 L1PA10 4194 + 1282 4161 9492 194 4 1 84 10 0 169 0 1 32 1 0 434 0 6 17 5 9 172 7 4 218 13 0 27 9 0 15 2 0 6 11 20 171 20 19 69 50 35 43 2 0 24 0 1 114 0 11 346 21 8 21 8 5 75 0 3 13 0 4 117 0 1 44 30 32 54 0 3 134 0 4 74 3 0 34 1 0 11 chain 400793 chr3 198295559 + 34763710 34768268 L1PA4 6152 + 621 5187 5141 61 1 4 550 0 1 870 0 3 1099 2 1 730 0 1 1032 0 1 213 chain 12496 chr3 198295559 + 34825064 34825348 L1PB1 5432 + 5118 5422 65992 15 0 27 8 15 13 23 0 17 14 2 1 45 1 0 15 11 0 12 1 0 16 27 22 24 1 0 23 1 0 7 5 4 18 chain 102019 chr3 198295559 + 34866083 34867215 L1P2 5180 + 1703 2835 18060 1132 chain 9002 chr3 198295559 + 34877695 34877836 THE1C-int 1605 + 1455 1599 72554 39 15 21 24 4 0 53 0 1 6 chain 512392 chr3 198295559 + 34904159 34910231 L1PA5 6144 + 0 6135 2648 121 0 14 18 3 15 84 5 6 156 17 13 173 4 16 425 0 1 127 9 0 667 0 1 335 0 2 139 0 1 850 2 1 133 1 4 386 0 11 375 1 0 1763 0 16 136 5 9 137 chain 28884 chr3 198295559 + 34913100 34913400 AluYa8 305 + 0 300 43505 300 chain 38141 chr3 198295559 + 34924312 34924769 L1PA7 6471 + 5593 6047 35959 29 3 0 425 chain 131025 chr3 198295559 + 34988181 34989778 LTR12C 1709 + 0 1709 13925 282 13 1 155 1 0 212 0 119 68 1 0 275 1 0 5 3 1 75 0 7 24 0 4 399 1 0 82 chain 374287 chr3 198295559 + 35089336 35094780 L1PB1 5432 + 25 5419 5580 12 8 10 40 12 56 52 5 8 270 3 1 70 3 1 4 1 0 43 49 51 13 8 12 604 1 0 102 1 0 29 5 0 276 1 0 615 2 0 203 5 6 160 6 7 42 0 3 119 1 0 57 0 3 31 0 1 249 1 0 30 6 10 144 0 1 291 2 0 5 1 3 61 0 1 259 31 25 7 0 2 109 0 4 170 0 4 325 3 0 31 6 7 41 0 2 6 7 9 59 1 0 183 0 1 60 157 70 8 0 3 32 1 0 9 1 0 11 4 0 11 3 1 48 2 1 13 5 4 41 81 69 24 1 0 17 5 4 13 5 4 11 chain 532859 chr3 198295559 + 35103912 35109921 L1PA3long 6157 + 0 6146 1717 152 6 7 115 1 0 502 0 128 2358 0 1 1327 0 2 718 0 4 665 0 1 21 4 5 140 chain 16537 chr3 198295559 + 35128099 35128277 L1PA3long 6157 + 5510 5688 60323 178 chain 41475 chr3 198295559 + 35128277 35128742 L1PA3long 6157 + 5690 6157 33690 448 1 3 16 chain 15517 chr3 198295559 + 35149053 35149252 MER107 203 + 0 203 61629 25 1 0 123 1 6 49 chain 71464 chr3 198295559 + 35173080 35173952 MER11D 897 + 0 897 23661 242 7 5 255 1 3 15 1 3 70 4 27 277 chain 5815 chr3 198295559 + 35187074 35187142 MLT2D 439 + 1 69 81850 68 chain 510307 chr3 198295559 + 35225817 35240872 L1PA4 6152 + 3 6151 2754 950 0 1 503 0 1 124 0 1 1792 0 1 978 0 4 1014 1 0 143 9105 191 445 chain 111420 chr3 198295559 + 35252594 35254085 L1PA11 4918 + 3002 4504 16888 82 1 0 97 0 4 481 1 0 24 1 0 237 0 2 19 1 0 104 3 4 51 0 1 204 6 7 8 0 12 54 3 2 12 3 0 6 0 1 61 2 0 12 0 2 6 3 0 9 chain 45599 chr3 198295559 + 35269653 35270161 L1PA5 6144 + 5627 6135 31262 508 chain 113657 chr3 198295559 + 35282257 35283745 L1PA11 4918 + 3026 4508 16596 208 0 1 81 13 16 4 1 0 37 0 1 290 1 0 263 0 2 144 3 1 254 6 0 65 2 1 12 1 2 64 2 0 16 1 0 20 chain 63342 chr3 198295559 + 35303915 35304609 L1PA3long 6157 + 5448 6142 25555 694 chain 3519 chr3 198295559 + 35438077 35438130 MER4D 903 + 840 895 95109 6 0 1 25 1 0 15 0 2 6 chain 301291 chr3 198295559 + 35454617 35458296 L1HS 6032 + 8 3734 6793 129 35 34 85 1 0 521 142 187 94 5 7 1596 1 2 729 0 1 341 chain 89654 chr3 198295559 + 35507281 35508404 L1PA8A 6298 + 5173 6291 19736 78 1 0 151 7 0 89 5 8 150 2 1 409 0 1 231 chain 80195 chr3 198295559 + 35587618 35588601 L1PA8 5853 + 4702 5687 21588 13 0 3 288 6 7 209 0 1 335 5 4 46 1 0 74 1 0 5 chain 58193 chr3 198295559 + 35593789 35594436 L1PA5 6144 + 5320 5968 26906 490 0 1 157 chain 361502 chr3 198295559 + 35610446 35614571 L1PA4 6152 + 2019 6143 5786 604 6 4 1053 1 0 101 12 13 144 0 1 1878 1 2 79 1 0 96 11 11 138 chain 12215 chr3 198295559 + 35700870 35701011 L1PA6 6164 + 5999 6140 66451 141 chain 32787 chr3 198295559 + 35827748 35828123 L1PA7 6471 + 6097 6470 39679 368 2 0 5 chain 2998 chr3 198295559 + 35864971 35865004 MER51A 677 + 199 232 99858 33 chain 5209 chr3 198295559 + 36023764 36023825 Tigger3c 601 + 43 104 84636 61 chain 30006 chr3 198295559 + 36055246 36055624 THE1C 375 + 1 375 42046 128 3 0 221 1 0 25 chain 539647 chr3 198295559 + 36082744 36088885 L1PA4 6152 + 3 6151 1360 185 6 19 27 0 1 219 14 8 118 1 0 154 1 2 500 1 0 3445 5 0 105 1 3 6 2 0 509 0 4 730 0 1 112 chain 57264 chr3 198295559 + 36099384 36100009 L1PA3long 6157 + 5361 5986 27170 625 chain 127407 chr3 198295559 + 36104183 36105577 L1PA2 6032 + 4637 6031 14369 619 1 0 455 0 1 319 chain 113198 chr3 198295559 + 36122637 36123992 L1PA7 6471 + 5098 6459 16653 347 0 1 4 1 0 171 1 0 79 1 4 78 0 3 132 5 6 536 chain 19635 chr3 198295559 + 36146971 36147186 L1PA2 6032 + 5817 6032 56874 215 chain 4251 chr3 198295559 + 36180372 36180460 MLT1D 503 + 364 455 89817 14 17 0 8 1 21 48 chain 137068 chr3 198295559 + 36226306 36227864 L1PA5 6144 + 4587 6139 13336 35 2 0 882 2 0 268 2 0 119 1 0 110 0 1 137 chain 120012 chr3 198295559 + 36238312 36239607 L1PA2 6032 + 4736 6031 15536 1295 chain 240165 chr3 198295559 + 36250727 36254144 L1PA10 4194 + 250 3670 8465 21 2 0 7 68 41 16 79 68 85 3 0 188 0 1 83 67 68 109 15 5 661 0 9 122 0 1 22 24 58 200 0 4 15 0 1 59 0 1 131 0 4 166 10 3 247 3 4 24 5 9 55 0 1 24 0 1 687 0 2 5 5 3 209 chain 10452 chr3 198295559 + 36286923 36287149 L1MA5A 2387 + 2107 2299 69515 48 2 0 32 1 0 24 14 11 10 28 0 33 7 8 22 1 0 4 chain 3682 chr3 198295559 + 36310839 36310929 MER67A 545 + 429 520 93727 21 34 35 35 chain 472923 chr3 198295559 + 36320973 36326304 L1PA4 6152 + 10 5358 3789 577 0 1 139 8 4 505 0 1 238 7 9 293 0 1 212 0 1 2125 0 2 457 0 4 574 0 5 142 1 5 53 chain 93746 chr3 198295559 + 36436761 36437787 L1PA3long 6157 + 5132 6157 19076 766 1 0 259 chain 116068 chr3 198295559 + 36453162 36454551 LTR12C 1709 + 0 1709 16220 338 0 43 269 0 278 184 1 0 5 3 1 96 5 4 6 0 4 397 1 0 84 chain 108182 chr3 198295559 + 36509686 36510961 L1PA7 6471 + 5186 6464 17295 435 0 6 301 4 1 535 chain 96307 chr3 198295559 + 36568528 36569677 L1P2 5180 + 1523 2764 18736 10 0 9 607 2 85 530 chain 7859 chr3 198295559 + 36575918 36576053 MLT1A1 405 + 266 394 75232 51 5 6 9 1 0 36 8 1 25 chain 11257 chr3 198295559 + 36611267 36611436 L1P4 1494 + 80 242 68154 8 2 0 4 3 0 32 2 1 20 1 0 97 chain 28067 chr3 198295559 + 36611436 36611744 L1PA3long 6157 + 5849 6157 44768 308 chain 138358 chr3 198295559 + 36633724 36635586 LTR12C 1709 + 0 1709 13231 678 266 72 47 0 40 275 1 0 5 3 1 106 0 4 42 0 1 287 1 0 151 chain 23761 chr3 198295559 + 36634405 36634665 LTR12C 1709 - 219 479 51180 260 chain 171741 chr3 198295559 + 36656723 36659313 L1PB1 5432 + 2856 5422 11011 184 21 22 203 0 1 216 24 23 224 3 4 201 0 3 25 0 1 23 0 1 260 11 10 53 1 0 223 0 1 12 0 1 77 22 19 63 9 9 88 1 9 94 4 5 187 5 4 13 3 0 23 9 6 12 47 41 23 51 49 11 1 0 16 4 1 14 9 0 10 19 15 10 2 0 24 1 0 20 2 1 13 1 0 18 chain 83608 chr3 198295559 + 36676210 36677125 L1PA3long 6157 + 5240 6157 20889 72 0 2 843 chain 25984 chr3 198295559 + 36722513 36722875 THE1B 368 + 0 368 47737 168 1 0 93 3 0 23 3 4 12 14 23 45 chain 120411 chr3 198295559 + 36722875 36724438 THE1B-int 1605 + 0 1599 15462 281 0 2 148 0 25 362 21 28 51 0 1 201 19 20 480 chain 26844 chr3 198295559 + 36724443 36724807 THE1B 368 + 0 368 46481 161 8 7 93 3 0 45 5 13 49 chain 13423 chr3 198295559 + 36811191 36811435 L1PB3 3668 + 3331 3556 64432 41 18 19 87 22 6 9 2 1 9 1 0 25 3 1 27 chain 11597 chr3 198295559 + 36887556 36887725 MER30 238 + 58 238 67577 5 0 1 39 14 24 111 chain 6418 chr3 198295559 + 36930471 36930552 MLT1E2 623 + 542 623 79612 81 chain 33009 chr3 198295559 + 36932940 36933431 LTR10D 510 + 0 510 39507 70 3 4 17 14 19 76 5 12 34 13 15 15 2 0 5 2 4 75 0 3 85 0 1 75 chain 9538 chr3 198295559 + 36960830 36961137 MLT1A1 405 + 0 344 71399 26 0 1 9 126 137 11 9 10 11 10 35 26 1 0 78 chain 2856 chr3 198295559 + 36973947 36973977 MER74A 558 + 139 169 101194 30 chain 25527 chr3 198295559 + 36997800 36998096 AluSp 311 + 10 308 48442 267 1 3 28 chain 15556 chr3 198295559 + 37035558 37035747 Tigger1 2417 + 1124 1313 61579 189 chain 29037 chr3 198295559 + 37130509 37131063 MER44C 733 + 0 632 43269 6 1 0 12 4 19 113 108 156 35 7 10 63 2 3 7 0 2 7 10 12 129 0 8 50 chain 5696 chr3 198295559 + 37140326 37140399 U6 107 + 0 76 82358 47 0 3 26 chain 9528 chr3 198295559 + 37151907 37152048 L1PB2 3958 + 3646 3785 71415 35 1 0 31 0 2 41 3 1 19 1 0 10 chain 3140 chr3 198295559 + 37161475 37161526 L1MB7 1623 + 1560 1610 98466 36 2 1 13 chain 6503 chr3 198295559 + 37196739 37196818 U13 108 + 0 79 79332 79 chain 13941 chr3 198295559 + 37205268 37205833 LTR7B 505 + 252 497 63686 36 1 0 40 19 25 29 324 0 57 16 15 43 chain 134076 chr3 198295559 + 37205916 37208087 HERVH-int 3825 + 78 3825 13646 126 0 1 128 8 7 56 440 1774 141 0 1 402 3 4 82 11 0 47 0 1 167 1 0 402 3 254 154 chain 21580 chr3 198295559 + 37209514 37209844 LTR7B 505 + 0 487 54388 105 0 10 31 0 6 18 14 27 26 1 130 88 14 13 33 chain 120265 chr3 198295559 + 37232821 37234268 LTR12C 1709 + 0 1709 15490 262 0 1 242 15 0 145 0 278 184 1 0 4 6 4 98 6 10 378 4 1 102 chain 23874 chr3 198295559 + 37292399 37292695 AluSc 308 + 0 291 50990 18 6 0 201 1 0 42 0 2 28 chain 6444 chr3 198295559 + 37378893 37378978 LTR36 617 + 521 617 79534 15 2 0 52 0 13 16 chain 5030 chr3 198295559 + 37424052 37424112 MLT1H2 457 + 397 457 85520 60 chain 9110 chr3 198295559 + 37444441 37444563 MLT1B 390 + 266 390 72323 13 1 3 108 chain 2978 chr3 198295559 + 37654089 37654144 MADE2 80 + 0 69 100074 34 9 23 12 chain 4863 chr3 198295559 + 37733722 37733784 MLT1A 405 + 294 363 86350 48 0 7 14 chain 3895 chr3 198295559 + 37770137 37770181 MER94 134 + 89 133 92173 44 chain 458291 chr3 198295559 + 37838816 37844352 L1PA6 6164 + 0 6161 4169 136 0 1 255 16 15 42 19 0 88 1 2 248 0 17 295 22 30 548 0 1 143 0 572 163 4 10 631 2 0 68 0 5 30 2 0 398 3 0 202 2 1 783 12 53 19 0 3 549 0 1 231 1 0 465 5 0 6 1 6 137 2 0 7 chain 5568 chr3 198295559 + 37927073 37927139 Tigger4b 360 + 46 112 82951 66 chain 13531 chr3 198295559 + 37973947 37974157 MER30 238 + 0 238 64274 12 7 0 6 12 19 71 2 30 100 chain 7216 chr3 198295559 + 38014576 38014666 HY3 101 + 9 99 76891 90 chain 127129 chr3 198295559 + 38052758 38054213 SVA_C 1631 + 11 1630 14404 46 3 7 17 14 1 635 0 40 124 0 137 596 4 0 16 chain 5501 chr3 198295559 + 38056660 38056723 MER41B 635 + 481 544 83228 63 chain 12934 chr3 198295559 + 38136305 38136475 LTR5B 1012 + 803 1012 65196 63 0 28 12 0 9 86 0 2 9 chain 84457 chr3 198295559 + 38202543 38203501 LTR13A 966 + 0 966 20723 76 0 4 242 0 1 412 0 4 32 1 0 195 chain 3685 chr3 198295559 + 38329754 38329883 MER3 215 - 11 151 93702 32 75 86 22 chain 20949 chr3 198295559 + 38330475 38330981 L1MB8 1703 + 1202 1649 55196 22 13 15 107 3 4 70 86 85 81 78 26 14 6 0 4 3 0 19 chain 44876 chr3 198295559 + 38343276 38343766 L1PA3long 6157 + 3748 4247 31652 416 0 9 74 chain 24061 chr3 198295559 + 38345224 38345514 AluSp 311 + 7 297 50709 290 chain 77008 chr3 198295559 + 38381092 38382138 MER11C 1089 + 0 1063 22311 246 0 9 16 0 2 44 0 4 65 1 0 147 70 69 88 6 9 38 0 1 125 0 1 56 1 0 143 chain 556496 chr3 198295559 + 38405400 38411529 L1PA3long 6157 + 6 6146 333 81 1 0 878 0 1 201 0 3 2001 1 0 1177 6 10 952 0 4 440 1 2 390 chain 38282 chr3 198295559 + 38420768 38421254 MER9B 498 + 8 498 35856 145 2 1 245 0 1 4 0 1 32 0 2 5 0 1 53 chain 258342 chr3 198295559 + 38422169 38425771 HERVK9-int 4720 + 351 3624 8015 554 10 7 301 14 14 7 316 0 12 0 3 780 14 14 238 0 1 252 8 9 759 43 26 6 0 2 288 chain 38965 chr3 198295559 + 38426771 38427256 MER9B 498 + 12 498 35381 141 2 1 290 0 1 24 0 1 28 chain 5994 chr3 198295559 + 38650808 38650877 LTR12F 595 + 402 471 81103 69 chain 47086 chr3 198295559 + 38666103 38667703 L1MA4 2864 + 1051 2693 30616 22 99 98 24 19 30 38 1 0 73 5 6 25 558 656 95 1 0 71 7 6 15 42 38 60 144 89 100 3 2 144 1 0 27 4 1 22 chain 32889 chr3 198295559 + 38693523 38693887 L1PA4 6152 + 4331 4695 39596 364 chain 25660 chr3 198295559 + 38716246 38716606 THE1B 368 + 0 368 48231 44 0 15 12 5 0 86 16 15 121 1 0 75 chain 96174 chr3 198295559 + 38780529 38781771 HSMAR1 1287 + 0 1245 18757 122 0 3 137 0 2 282 14 12 187 0 1 175 14 17 9 4 0 114 1 0 4 2 3 177 chain 203368 chr3 198295559 + 38784265 38786635 L1PA7 6471 + 4091 6465 9595 46 0 1 839 0 1 642 0 4 834 2 0 7 chain 76190 chr3 198295559 + 38802546 38803398 L1PA5 6144 + 4880 5732 22518 852 chain 4382 chr3 198295559 + 38832562 38832618 MER5A1 166 + 24 91 88986 25 0 7 13 0 4 18 chain 68253 chr3 198295559 + 38833143 38833920 L1PA5 6144 + 5360 6138 24393 450 0 1 80 1 0 110 0 1 136 chain 269616 chr3 198295559 + 38857929 38862528 L1PB2 3958 + 25 3838 7718 27 103 67 18 3 1 25 19 9 6 1 0 49 8 5 34 23 31 70 0 1 231 0 7 195 10 0 371 17 11 41 0 1 31 1 0 48 0 4 41 0 3 82 7 11 5 2 0 140 1 0 79 734 9 85 0 1 56 0 1 213 0 1 165 6 5 273 1 0 446 1 0 30 0 2 125 0 2 224 2 0 56 50 48 28 2 0 13 5 0 86 1 0 8 2 1 70 1 0 16 0 1 4 1 0 44 1 0 69 5 0 24 6 5 58 chain 128873 chr3 198295559 + 38875428 38878149 L1PB1 5432 + 3535 5417 14167 32 6 8 147 3 0 752 0 3 53 1 2 100 12 8 154 0 8 212 0 2 87 1 2 9 827 0 24 27 21 9 2 0 52 97 88 18 7 6 12 7 5 6 0 1 14 1 0 22 1 0 12 1 0 13 chain 15649 chr3 198295559 + 38887425 38887596 L1PA4 6152 + 5980 6151 61467 171 chain 2764 chr3 198295559 + 38891112 38891405 L1M4b 1526 + 992 1255 101866 20 0 18 8 239 191 26 chain 4400 chr3 198295559 + 38917825 38917898 L1PB1 5432 + 5354 5423 88885 16 1 0 22 1 0 11 2 1 14 1 0 5 chain 17140 chr3 198295559 + 38928271 38928536 L1PA8 5853 + 5591 5853 59652 17 2 0 13 0 1 56 2 1 61 2 1 17 16 16 79 chain 560800 chr3 198295559 + 38932236 38938390 L1PA3long 6157 + 4 6157 154 2240 3 0 707 0 2 539 0 7 96 0 1 703 1 0 1250 8 1 607 chain 3765 chr3 198295559 + 38943756 38943962 L1MA4 2864 + 2638 2804 93108 17 19 16 12 104 71 6 2 0 6 2 0 38 chain 108199 chr3 198295559 + 38950969 38952226 LTR12C 1709 + 0 1709 17289 297 0 1 503 1 317 106 0 4 274 1 132 75 chain 5633 chr3 198295559 + 38958451 38958547 LTR33 499 + 404 499 82647 35 15 14 46 chain 10339 chr3 198295559 + 38963577 38963867 L1PB1 5432 + 5158 5424 69715 9 2 0 18 0 1 34 2 1 11 6 5 7 0 1 36 95 77 12 1 0 21 1 0 13 1 0 16 1 0 4 chain 53927 chr3 198295559 + 38998468 38999062 L1PA4 6152 + 5551 6146 28253 78 0 1 516 chain 4749 chr3 198295559 + 39002608 39002709 MLT1H 522 + 26 149 86966 12 2 0 37 26 50 24 chain 39235 chr3 198295559 + 39024443 39024987 MER39B 650 + 0 589 35188 66 11 52 123 0 1 19 1 0 131 7 11 131 0 2 8 3 1 44 chain 30869 chr3 198295559 + 39042993 39043539 L1MA2 4263 + 3588 4114 41253 74 1 0 134 2 0 5 0 2 6 46 45 92 31 29 83 39 24 22 1 0 10 chain 27685 chr3 198295559 + 39046342 39046726 L1MA5 2750 + 1264 1653 45340 30 4 0 7 0 2 13 0 1 8 5 9 191 0 4 14 2 0 110 chain 15798 chr3 198295559 + 39052841 39053023 L1PA6 6164 + 5975 6156 61286 40 1 0 141 chain 27784 chr3 198295559 + 39078750 39079047 AluYa5 310 + 0 299 45203 18 0 2 279 chain 5637 chr3 198295559 + 39165921 39165986 MER41A 554 + 403 468 82617 65 chain 8575 chr3 198295559 + 39181735 39181855 MER85 139 + 7 139 73504 48 3 5 30 1 11 38 chain 52119 chr3 198295559 + 39223238 39223902 L1PA8 5853 + 5196 5853 28837 368 1 0 44 16 14 71 8 6 41 2 1 19 2 1 92 chain 134900 chr3 198295559 + 39227088 39228591 SVA_D 2077 + 58 2077 13546 18 5 8 292 0 4 298 2 3 151 1 0 85 0 489 515 0 20 136 chain 3410 chr3 198295559 + 39234363 39234434 MADE1 96 + 0 96 95985 17 0 25 54 chain 29389 chr3 198295559 + 39286368 39286678 AluYb8 318 + 0 309 42753 123 1 0 186 chain 13698 chr3 198295559 + 39289727 39289976 MLT1B 390 + 117 368 64016 10 19 0 7 1 0 37 34 54 6 0 1 89 0 1 46 chain 325182 chr3 198295559 + 39304230 39308387 L1P3 4156 + 0 4136 6305 243 59 58 19 11 10 273 12 10 108 1 6 477 2 3 146 1 0 75 0 1 526 0 1 517 8 9 35 34 8 9 0 26 77 24 0 249 0 4 203 1 5 308 0 1 74 15 13 25 6 1 587 2 0 6 1 0 23 chain 145439 chr3 198295559 + 39311644 39313288 L1PA5 6144 + 4488 6130 12663 806 2 0 836 chain 6792 chr3 198295559 + 39327335 39327705 MLT1D 503 + 91 503 78347 52 265 307 53 chain 35061 chr3 198295559 + 39336851 39337297 MLT2A1 477 + 0 477 37980 157 0 1 11 4 1 11 0 1 22 0 1 72 0 1 105 0 2 24 3 31 37 chain 13210 chr3 198295559 + 39337297 39337501 Tigger4b 360 + 182 360 64763 121 30 4 53 chain 20684 chr3 198295559 + 39346919 39347195 LTR8 732 + 0 285 55520 19 0 1 12 1 10 114 7 6 123 chain 38448 chr3 198295559 + 39352664 39354306 LTR15 485 + 0 477 35761 101 857 2 339 310 0 35 chain 13580 chr3 198295559 + 39357972 39360812 L1MA4 2864 + 2034 2439 64195 60 3 2 22 1 0 31 2580 151 6 1 0 28 4 1 104 chain 201292 chr3 198295559 + 39362624 39365600 L1PA10 4194 + 241 3211 9673 9 1 0 20 3 1 13 256 206 34 0 3 84 21 22 185 0 1 4 1 0 37 17 18 731 4 0 43 1 3 155 0 3 114 10 5 158 0 5 61 0 1 33 1 4 28 0 4 76 0 6 127 0 14 174 1 0 217 7 21 350 chain 78118 chr3 198295559 + 39417233 39418226 LTR13 1007 + 0 1007 22069 381 4 5 100 4 1 6 0 16 38 6 0 136 0 2 14 2 0 113 0 1 122 0 1 20 19 23 28 chain 25680 chr3 198295559 + 39459124 39459444 MER48 407 + 0 342 48200 14 0 1 138 0 20 94 0 1 74 chain 20543 chr3 198295559 + 39544750 39545096 THE1B 368 + 2 368 55725 106 8 9 59 0 2 6 38 56 66 15 14 48 chain 532949 chr3 198295559 + 39550910 39557348 L1PA7 6471 + 3 6458 1713 459 0 12 570 1 0 220 1 0 495 2 1 316 0 1 58 0 1 503 0 2 455 0 4 584 2 3 26 0 2 71 0 1 441 2 1 37 2 0 66 2 1 30 0 1 196 0 1 13 1 0 4 0 1 762 1 0 225 0 1 4 1 0 50 1 0 796 0 9 7 9 0 25 chain 124954 chr3 198295559 + 39585082 39586428 L1PA2 6032 + 3962 5309 14714 900 0 1 446 chain 15898 chr3 198295559 + 39646838 39647010 AluYb9 318 + 146 318 61160 172 chain 110227 chr3 198295559 + 39655320 39656655 SVA_B 1603 + 44 1603 17051 22 0 5 282 3 18 145 9 46 37 0 117 62 8 5 39 1 4 66 0 43 12 0 1 226 0 2 27 1 4 41 0 3 346 2 0 6 chain 92191 chr3 198295559 + 39658377 39659437 HERV17-int 4347 + 3296 4347 19312 44 7 0 422 2 0 585 chain 26703 chr3 198295559 + 39659751 39660074 LTR17 781 + 0 326 46678 116 0 13 170 10 0 27 chain 130759 chr3 198295559 + 39713133 39714680 LTR12C 1709 + 0 1709 13950 309 0 1 4 1 0 81 0 1 303 0 159 253 1 0 5 3 1 39 0 1 67 0 4 481 chain 42556 chr3 198295559 + 39802505 39803069 LTR12_ 688 + 0 688 33029 142 1 2 104 3 1 17 15 30 114 0 102 40 0 8 128 chain 14875 chr3 198295559 + 39822366 39822568 MER30 238 + 20 230 62417 50 9 0 39 4 0 10 0 21 90 chain 15493 chr3 198295559 + 39859875 39860157 L1MA9 1812 + 35 316 61664 34 6 4 88 46 56 67 9 0 32 chain 328580 chr3 198295559 + 39886052 39889689 L1PA3long 6157 + 1856 6157 6240 1400 0 663 1339 0 1 898 chain 521095 chr3 198295559 + 39953562 39959685 L1PA5 6144 + 0 6144 2222 120 0 14 19 3 9 137 0 12 241 0 1 44 1 0 155 16 12 85 3 1 319 9 0 264 6 5 231 2 0 2006 0 1 496 0 1 4 1 0 450 1 2 664 1 5 34 1 0 307 0 4 488 4 2 11 chain 347692 chr3 198295559 + 39973070 39977042 L1PA4 6152 + 2155 6138 5939 634 0 2 315 0 1 68 1 0 513 0 2 301 0 5 188 1 0 109 1 0 338 1 0 670 0 5 522 2 1 165 11 4 8 0 7 63 0 1 61 chain 87112 chr3 198295559 + 39985119 39986064 L1PA3long 6157 + 4307 5252 20213 945 chain 44220 chr3 198295559 + 39987830 39988320 L1PA3long 6157 + 5667 6157 32000 490 chain 9668 chr3 198295559 + 39990837 39990950 L1PA7 6471 + 6146 6259 71122 113 chain 16656 chr3 198295559 + 39990950 39991152 L1PA7 6471 + 6261 6463 60206 202 chain 480198 chr3 198295559 + 39994053 40035230 L1PA4 6152 + 1 6148 3631 1130 0 1 316 0 1 395 0 4 1842 35035 0 941 1 0 1517 chain 121853 chr3 198295559 + 39997986 39999378 L1PA4 6152 + 3941 5344 15208 261 0 2 150 0 4 276 0 1 236 0 1 149 1 0 276 1 5 42 chain 19166 chr3 198295559 + 40032551 40032771 L1PA4 6152 + 3468 3688 57378 220 chain 73905 chr3 198295559 + 40040197 40040993 L1HS 6032 + 5237 6031 23119 607 2 0 187 chain 29384 chr3 198295559 + 40119595 40119923 L1PA3long 6157 + 5824 6154 42760 159 0 2 169 chain 330268 chr3 198295559 + 40133902 40137685 L1P1 4361 + 1 3783 6210 146 14 11 128 0 1 2581 0 1 914 chain 8714 chr3 198295559 + 40201041 40201165 MER85 139 + 4 139 73181 51 3 5 30 0 10 16 1 0 23 chain 12991 chr3 198295559 + 40236091 40236289 Tigger3a 397 + 53 334 65127 23 23 82 72 0 10 19 0 14 61 chain 21718 chr3 198295559 + 40240316 40240591 L1P1 4361 + 32 308 54206 116 13 14 146 chain 537414 chr3 198295559 + 40271432 40277506 L1PA5 6144 + 47 6144 1487 1419 0 17 238 0 3 1294 0 1 1322 0 4 949 1 0 597 1 0 253 chain 35077 chr3 198295559 + 40278062 40278589 L1P4 1494 + 289 801 37969 44 11 4 209 2 0 6 25 21 14 0 1 175 1 0 4 6 5 6 1 0 23 chain 62209 chr3 198295559 + 40324354 40325312 L1PA16 3655 + 2630 3588 25814 47 1 0 47 0 3 6 3 0 7 8 17 45 5 0 83 38 28 4 1 0 65 0 2 148 2 1 56 1 12 89 3 1 247 27 28 12 3 0 10 chain 11839 chr3 198295559 + 40343323 40343800 MER41B 635 + 481 634 67134 33 324 0 120 chain 42827 chr3 198295559 + 40346254 40346722 L1PA5 6144 + 4823 5291 32873 468 chain 37008 chr3 198295559 + 40346722 40347138 L1PA5 6144 + 5295 5715 36730 15 0 3 15 0 1 386 chain 36250 chr3 198295559 + 40347139 40347559 L1PA5 6144 + 5715 6137 37241 323 1 3 96 chain 174310 chr3 198295559 + 40348620 40351878 MER41-int 2638 + 86 2622 10882 17 34 9 52 34 19 30 1 0 4 2 0 12 2 0 19 20 15 33 4 0 103 1 0 23 0 3 34 1 0 30 0 4 181 1 0 135 343 14 252 1 0 48 0 1 132 364 3 58 8 7 41 1 2 4 1 0 175 1 8 15 0 1 98 1 0 51 9 11 64 15 17 40 4 3 22 2 0 219 0 1 80 0 1 110 0 1 157 0 8 75 19 16 5 0 3 70 chain 39854 chr3 198295559 + 40440979 40441422 L1PA5 6144 + 5368 5810 34770 347 1 0 95 chain 30104 chr3 198295559 + 40441422 40441755 L1PA5 6144 + 5811 6144 41940 333 chain 5900 chr3 198295559 + 40490330 40490493 MSTD-int 1705 + 44 215 81488 43 43 45 16 18 21 11 1 4 31 chain 40493 chr3 198295559 + 40537599 40538208 Tigger1 2417 + 642 1286 34312 48 0 7 17 0 1 42 7 11 32 1 4 40 12 20 57 0 3 26 0 1 9 4 8 61 0 9 7 11 6 235 chain 24908 chr3 198295559 + 40560895 40561296 LTR7 482 + 0 482 49418 54 23 61 67 19 19 23 6 7 19 0 30 27 1 0 5 1 12 58 0 2 98 chain 280818 chr3 198295559 + 40561298 40565014 HERVH-int 3825 + 0 3825 7398 230 0 1 299 1 0 11 1 0 4 0 1 24 2 1 8 2 1 12 24 12 14 1 38 27 2 0 14 1 0 14 23 0 7 130 0 31 17 20 10 0 3 47 2 0 397 15 0 203 9 0 29 0 2 10 1 0 215 4 31 83 3 15 190 1 5 128 0 3 535 0 1 5 1 0 59 0 1 61 0 35 11 35 0 222 9 11 39 0 210 268 0 2 225 chain 28644 chr3 198295559 + 40566271 40566678 LTR7 482 + 0 482 43877 54 23 61 109 0 1 24 1 0 14 1 32 19 0 10 108 4 0 50 chain 127296 chr3 198295559 + 40628509 40630113 THE1D-int 1627 + 18 1627 14388 701 0 5 627 13 14 84 1 0 168 1 0 4 0 1 5 chain 397065 chr3 198295559 + 40632033 40637739 L1PB1 5432 + 17 5422 5195 9 6 0 274 16 15 47 0 3 115 1 0 71 0 2 34 0 4 171 2 0 6 0 2 5 3 1 56 0 1 172 4 5 380 7 9 12 1 0 744 3 0 98 1 0 239 0 1 273 11 40 19 1 0 61 0 3 273 331 0 241 1 0 312 22 17 12 0 1 695 4 13 101 5 7 61 9 32 140 0 8 301 19 15 20 1 0 8 1 0 5 12 8 9 2 0 52 2 1 15 1 0 45 1 0 15 69 50 24 1 0 22 2 1 11 3 2 16 chain 19888 chr3 198295559 + 40668458 40668706 L1PA8 5853 + 5610 5853 56548 69 1 0 14 1 0 8 1 0 43 1 0 16 2 1 92 chain 25933 chr3 198295559 + 40704717 40705066 MLT2A1 477 + 0 359 47817 44 1 2 66 5 6 24 0 1 26 0 4 151 1 0 5 0 4 26 chain 6194 chr3 198295559 + 40705095 40705212 L1PB1 5432 + 5115 5220 80374 19 1 0 10 1 0 13 25 15 48 chain 3217 chr3 198295559 + 40705235 40705274 L1PB1 5432 + 5241 5280 97740 39 chain 6670 chr3 198295559 + 40705275 40705428 L1PB1 5432 + 5280 5414 78733 16 1 0 4 2 0 7 9 1 18 3 1 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 10 chain 134679 chr3 198295559 + 40757605 40763218 L1MA2 4263 + 502 4105 13572 17 0 1 391 21 17 4 1 0 11 1 0 4 9 13 9 0 1 133 16 37 75 4 0 6 3554 1515 10 0 1 27 1 0 58 1 0 75 4 6 162 1 0 130 0 1 29 1 0 18 41 41 31 2 0 239 2 1 9 1 0 10 5 2 28 25 37 11 1 0 140 3 0 154 11 9 77 3 16 47 chain 89605 chr3 198295559 + 40759027 40760015 L1PA3long 6157 + 5168 6157 19745 839 0 1 149 chain 3825 chr3 198295559 + 40786153 40786232 MADE1 96 + 0 96 92673 23 6 22 26 9 10 15 chain 67375 chr3 198295559 + 40804050 40804809 L1PA5 6144 + 5005 5769 24604 292 0 5 467 chain 3976 chr3 198295559 + 40843085 40843129 AluJb 308 - 201 245 91597 44 chain 101957 chr3 198295559 + 40931477 40933162 L1M1 2793 + 665 2402 18068 30 98 111 13 21 23 51 12 9 101 25 24 107 7 8 38 1 0 70 4 0 18 5 0 6 27 25 57 1 3 21 1 0 6 9 13 47 0 6 219 2 0 171 0 1 36 3 7 47 4 9 68 0 4 83 8 11 86 4 3 14 11 20 9 0 18 39 0 1 7 1 0 97 chain 26862 chr3 198295559 + 41066961 41067373 L1MA2 4263 + 3716 4114 46455 80 13 10 53 6 5 82 21 19 93 7 0 47 1 0 9 chain 20277 chr3 198295559 + 41276867 41277807 L1PB1 5432 + 2565 3556 10130 93 0 10 81 0 5 436 0 1 88 0 2 168 0 33 74 chain 490185 chr3 198295559 + 41277829 41283781 L1PA6 6164 + 0 6142 3417 108 0 1 4 6 12 119 2 1 322 1 0 233 0 19 84 0 4 389 0 3 147 1 0 15 22 7 98 0 2 201 0 1 195 6 171 33 1 2 42 0 2 118 16 0 433 0 1 416 8 8 49 9 13 254 0 4 183 0 1 101 0 1 824 0 2 691 0 5 175 2 0 77 0 1 335 0 2 66 30 31 136 chain 40274 chr3 198295559 + 41283800 41285667 L1PB1 5432 + 3556 5364 10130 46 2 1 22 7 11 88 27 11 28 4 3 91 27 7 524 1 0 140 5 7 93 4 5 72 0 2 7 7 6 84 41 43 256 1 0 14 3 0 21 1 0 9 1 0 9 6 2 11 2 0 51 2 1 11 7 6 42 1 0 16 3 0 10 5 1 5 5 0 15 23 20 17 chain 171281 chr3 198295559 + 41305191 41307171 SVA_D 2077 + 0 2077 11032 19 5 0 182 0 11 605 40 0 91 0 78 48 2 4 15 0 12 287 0 49 664 10 0 12 chain 33435 chr3 198295559 + 41311185 41311927 MLT2A1 477 + 4 469 39146 159 10 7 214 309 35 50 chain 10018 chr3 198295559 + 41322331 41322474 MER50 708 + 562 708 70383 13 1 0 63 8 12 58 chain 156522 chr3 198295559 + 41342486 41345121 L1PA11 4918 + 2482 4508 11966 802 326 0 305 1 23 83 0 1 127 0 2 139 2 0 126 5 6 65 314 0 23 0 5 121 3 7 14 1 0 62 2 1 63 0 3 14 2 0 14 1 0 20 chain 40518 chr3 198295559 + 41359756 41360349 L1PA11 4918 + 4001 4578 34299 314 0 2 16 0 2 54 6 5 80 2 0 14 1 0 20 20 12 10 16 12 12 2 1 12 3 0 11 chain 512225 chr3 198295559 + 41370356 41379213 L1PA7 6471 + 3 6469 2657 112 8 0 252 6 21 22 4 5 586 0 1 4 13 12 75 1 2 298 0 3 119 0 1 650 0 5 380 0 1 83 1 2 53 3 4 163 8 10 194 0 1 1318 0 1 280 7 11 274 0 1 112 1 4 443 2 0 115 2 0 81 0 1 134 0 10 240 2432 0 369 1 2 11 chain 177201 chr3 198295559 + 41376413 41378379 L1PA3long 6157 + 4184 6152 10717 759 0 1 124 0 1 1083 chain 30949 chr3 198295559 + 41378422 41378779 L1PA5 6144 + 5774 6132 41172 220 0 1 137 chain 15453 chr3 198295559 + 41411256 41411808 MER4B 649 + 120 421 61722 19 1 31 26 2 25 110 319 0 10 0 15 65 chain 283030 chr3 198295559 + 41424655 41428478 L1PA10 4194 + 325 4142 7339 10 3 1 17 1 0 10 1 0 7 1 0 10 5 0 5 3 0 10 16 8 59 37 22 123 0 1 151 9 8 203 0 1 4 2 0 124 5 8 72 0 4 39 7 6 14 0 16 25 7 4 48 0 1 265 6 5 110 0 1 141 0 2 132 0 3 25 1 4 83 5 6 106 5 9 62 0 1 378 0 5 349 7 0 108 1 2 8 1 0 565 1 4 42 1 0 22 0 1 17 8 0 7 0 8 9 0 1 276 2 1 12 2 1 9 3 0 26 chain 112544 chr3 198295559 + 41444829 41446077 L1PA4 6152 + 4095 5343 16741 1248 chain 299882 chr3 198295559 + 41492403 41495785 L1HS 6032 + 1840 5225 6833 2780 0 3 602 chain 24663 chr3 198295559 + 41501211 41501501 AluY 311 + 0 286 49781 29 4 0 257 chain 147861 chr3 198295559 + 41511184 41513354 L1PB1 5432 + 2360 4521 12494 126 9 8 258 49 50 40 4 0 81 6 10 117 0 2 5 2 0 14 3 11 180 6 7 47 7 6 124 0 3 98 14 19 355 1 0 41 6 5 21 1 0 6 3 4 173 40 21 6 2 0 178 5 4 71 1 0 70 chain 6254 chr3 198295559 + 41554151 41554223 L1MA4A 3247 + 3058 3129 80162 49 1 0 22 chain 5932 chr3 198295559 + 41592432 41592545 L1PB1 5432 + 5308 5416 81352 19 2 0 5 1 0 14 2 0 24 1 0 8 2 5 8 1 0 13 1 0 12 chain 423567 chr3 198295559 + 41616960 41622745 L1PA8 5853 + 50 5833 4832 21 2 0 11 1 0 11 22 15 53 1 2 139 21 6 67 2 3 272 1 0 4 1 2 1361 2 1 32 6 2 177 0 1 45 0 4 164 0 1 73 0 6 103 0 3 100 9 8 42 2 1 106 1 0 72 0 6 18 0 396 15 399 0 193 0 1 391 0 1 65 6 7 533 1 2 282 0 1 141 2 0 6 12 14 66 0 1 230 2 13 180 11 12 19 0 4 7 1 0 46 2 0 37 4 0 34 1 0 13 1 0 48 2 1 19 1 0 73 chain 31042 chr3 198295559 + 41655178 41655536 L1PA4 6152 + 5791 6150 41093 23 4 5 331 chain 11761 chr3 198295559 + 41683086 41683275 LTR35 598 + 49 242 67286 57 2 0 13 18 25 67 1 0 31 chain 88963 chr3 198295559 + 41689463 41690444 L1PA3long 6157 + 5169 6157 19865 964 0 7 17 chain 79672 chr3 198295559 + 41695674 41696677 LTR13 1007 + 0 1007 21700 73 2 0 308 4 5 242 2 1 65 1 4 210 0 5 42 23 21 31 chain 41608 chr3 198295559 + 41737137 41737599 L1PA4 6152 + 4262 4724 33619 462 chain 15502 chr3 198295559 + 41760516 41760817 Tigger4b 360 + 22 351 61651 57 0 3 19 15 38 18 2 0 4 0 1 28 15 14 22 7 11 51 7 0 6 5 12 45 chain 57448 chr3 198295559 + 41764907 41765569 L1PA5 6144 + 5484 6142 27116 202 1 0 308 0 1 140 4 0 7 chain 3311 chr3 198295559 + 41768486 41768524 MLT1G1 539 + 240 278 96918 38 chain 284957 chr3 198295559 + 41772040 41775225 L1PA4 6152 + 2956 6151 7283 103 0 3 121 1 0 2634 0 1 157 10 11 142 0 6 17 chain 200935 chr3 198295559 + 41777857 41779998 L1HS 6032 + 3891 6032 9688 2141 chain 534112 chr3 198295559 + 41824182 41830296 L1PA4 6152 + 3 6141 1655 732 0 1 296 0 2 397 3 5 4 0 1 561 0 1 1178 1 0 67 9 21 692 0 1 389 0 4 927 0 4 8 2 0 191 1 0 656 chain 139309 chr3 198295559 + 41840391 41842153 SVA_A 1864 + 18 1864 13154 513 10 49 65 8 5 77 2 0 73 3 0 12 10 26 49 1 0 26 2 0 50 1 4 94 17 15 31 8 11 27 1 0 63 2 0 14 0 37 153 0 1 413 0 1 37 chain 3730 chr3 198295559 + 41845760 41845804 MSTB1 431 + 16 60 93400 44 chain 22484 chr3 198295559 + 41851688 41851937 L1PA4 6152 + 2929 3177 53143 242 1 0 6 chain 31562 chr3 198295559 + 41851938 41852294 L1PA4 6152 + 3177 3545 40692 74 0 12 282 chain 16742 chr3 198295559 + 41899499 41899721 MER30 238 + 0 238 60108 109 4 14 30 0 6 79 chain 510335 chr3 198295559 + 41925105 41931484 L1PA7 6471 + 0 6470 2752 403 0 1 308 0 57 12 3 1 169 1 0 4 1 2 253 0 4 539 1 0 48 3 6 142 1 0 153 0 2 393 1 0 135 7 0 52 0 2 5 2 1 220 0 1 13 0 1 169 0 4 26 0 1 31 1 0 245 0 4 90 4 0 32 10 9 38 9 23 54 3 2 289 3 0 45 12 13 188 0 1 10 1 0 324 0 4 249 0 1 351 21 28 70 12 4 388 2 1 191 0 1 73 9 17 549 0 7 11 chain 5885 chr3 198295559 + 41936521 41936617 L1MA2 4263 + 4010 4103 81540 48 7 0 19 6 10 16 chain 31253 chr3 198295559 + 41964583 41965006 LTR7B 505 + 0 495 40929 105 0 10 69 6 68 26 0 2 85 1 0 76 14 13 41 chain 6188 chr3 198295559 + 41965057 41965130 MER4D1 891 + 817 890 80399 73 chain 14010 chr3 198295559 + 41966882 41967056 MER41B 635 + 462 635 63581 4 1 0 169 chain 194701 chr3 198295559 + 42103718 42106466 L1P2 5180 + 2 2433 9900 141 10 21 83 3 2 259 1 0 7 38 11 261 11 9 139 0 26 276 317 0 1086 6 0 110 chain 38627 chr3 198295559 + 42109643 42110094 L1PA5 6144 + 5675 6127 35622 327 0 1 124 chain 178327 chr3 198295559 + 42235394 42238287 L1MA3 4352 + 1796 4352 10663 517 1 0 33 0 1 170 13 8 17 0 1 4 1 0 230 0 7 47 0 8 48 0 4 113 1 0 6 6 7 204 0 1 76 5 13 382 359 43 29 7 1 138 0 1 15 1 0 173 54 26 60 1 0 71 10 8 24 8 6 27 1 0 9 15 11 17 chain 510679 chr3 198295559 + 42239001 42244645 L1PA3long 6157 + 6 6157 2738 88 0 503 3349 0 1 99 0 1 1937 1 3 170 chain 53118 chr3 198295559 + 42258747 42259356 L1PA7 6471 + 5854 6465 28533 282 0 1 183 1 2 143 chain 13239 chr3 198295559 + 42330875 42331041 L1PA8 5853 + 5689 5853 64721 50 3 2 19 1 0 93 chain 12950 chr3 198295559 + 42385280 42385487 Tigger3a 397 + 51 305 65183 20 19 68 122 7 5 39 chain 6092 chr3 198295559 + 42438313 42438499 L1MB8 1703 + 1546 1661 80763 44 81 19 16 9 0 36 chain 21967 chr3 198295559 + 42445633 42445984 THE1D 372 + 0 366 53882 50 15 25 6 3 0 19 11 10 50 0 1 8 18 26 171 chain 3666 chr3 198295559 + 42448307 42448349 MER31B 477 + 18 60 93859 42 chain 3033 chr3 198295559 + 42448845 42448879 MER67B 652 + 507 541 99484 34 chain 23398 chr3 198295559 + 42465483 42465904 L1MA2 4263 + 3797 4165 51760 11 3 0 148 11 9 93 7 0 47 1 0 8 2 0 14 3 1 11 46 10 16 chain 91724 chr3 198295559 + 42483228 42484423 L1PBa 3878 + 2507 3703 19380 134 0 1 5 1 3 64 3 2 318 2 0 5 0 1 17 0 1 136 0 1 25 3 0 193 6 7 283 chain 10374 chr3 198295559 + 42557977 42558176 MER20 218 + 0 197 69663 24 1 2 54 10 11 54 4 0 13 8 9 11 7 6 13 chain 18584 chr3 198295559 + 42590377 42590598 AluY 311 + 29 295 58013 91 0 3 9 0 1 36 0 40 27 0 1 58 chain 6677 chr3 198295559 + 42592955 42593114 MER2 342 + 8 210 78712 24 61 104 74 chain 43602 chr3 198295559 + 42718039 42718591 MER41A 554 + 0 554 32380 63 8 10 69 1 0 254 0 1 4 1 0 140 0 1 12 chain 90805 chr3 198295559 + 42720404 42721839 PABL_A-int 1935 + 98 1533 19534 10 2 0 23 11 8 9 0 1 147 1 0 4 0 1 31 2 0 7 1 0 5 0 1 25 1 0 5 0 5 29 11 2 114 16 8 14 1 0 15 1 0 4 51 50 177 5 3 30 0 2 6 0 3 10 6 12 27 1 0 56 1 5 126 1 0 43 0 5 18 5 0 7 8 14 13 15 17 45 0 5 275 2 0 18 chain 41901 chr3 198295559 + 42721839 42722339 MER41-int 2638 + 2121 2636 33419 326 0 1 74 0 14 100 chain 42695 chr3 198295559 + 42722350 42723221 MER41A 554 + 0 554 32947 396 0 1 4 1 0 29 316 0 28 1 6 6 5 0 64 6 5 15 chain 14785 chr3 198295559 + 42770135 42770503 LTR12C 1709 + 932 1203 62550 166 51 20 15 113 47 23 chain 4628 chr3 198295559 + 42771783 42771887 L1MC2 1988 + 1811 1904 87654 32 24 20 32 7 0 9 chain 17055 chr3 198295559 + 42779039 42779219 AluYa5 310 + 123 303 59749 180 chain 167519 chr3 198295559 + 42796985 42799307 SVA_F 1814 + 9 1814 11243 872 1 0 55 0 1 10 0 15 178 531 0 37 1 0 637 chain 15981 chr3 198295559 + 42798134 42798301 SVA_F 1814 + 1046 1213 61047 167 chain 24250 chr3 198295559 + 42798321 42798583 SVA_F 1814 + 1006 1266 50418 171 1 0 10 1 0 79 chain 3264 chr3 198295559 + 42798583 42798620 SVA_F 1814 + 1090 1127 57493 37 chain 493923 chr3 198295559 + 42857849 42864016 L1PA7 6471 + 626 6467 3309 442 0 1 92 0 1 980 1 0 6 310 0 484 16 0 68 0 1 152 0 3 158 11 0 917 1 0 346 0 2 190 1 0 189 10 14 312 0 1 360 4 5 16 1 2 171 0 1 76 1 4 83 1 0 51 5 0 381 1 2 330 chain 20795 chr3 198295559 + 42883292 42883651 THE1B 368 + 0 368 55363 111 4 6 51 42 41 4 0 1 10 10 18 64 7 6 56 chain 24442 chr3 198295559 + 42884506 42884854 MER83B 357 + 2 357 50111 127 36 43 185 chain 3195 chr3 198295559 + 42888306 42888561 L1M4c 1769 + 53 283 97934 9 0 23 16 179 133 17 8 6 26 chain 123213 chr3 198295559 + 42973329 42974898 THE1A-int 1579 + 1 1573 14992 419 7 11 78 0 1 599 11 10 128 0 1 259 1 0 53 1 0 13 chain 557405 chr3 198295559 + 43064774 43070790 L1PA2 6032 + 5 6024 275 30 1 0 793 0 4 5192 chain 89424 chr3 198295559 + 43167272 43168247 L1PA4 6152 + 5169 6144 19772 975 chain 13211 chr3 198295559 + 43173572 43173772 MER30 238 + 30 238 64762 43 1 2 33 5 15 67 4 1 47 chain 23334 chr3 198295559 + 43191277 43191580 MER1B 344 + 43 344 51874 224 11 8 49 0 1 19 chain 19774 chr3 198295559 + 43198753 43199168 LTR45C 530 + 0 412 56707 118 2 0 22 147 148 88 2 0 36 chain 17658 chr3 198295559 + 43227628 43227865 L1P3 4156 + 3905 4139 59055 202 2 0 7 2 1 24 chain 11751 chr3 198295559 + 43277660 43278163 Tigger1 2417 + 1402 1585 67309 67 335 2 47 0 13 54 chain 44999 chr3 198295559 + 43355275 43357170 L1PREC2 3366 + 775 2548 31587 154 7 5 49 3 0 23 1188 1067 34 0 1 28 0 1 88 5 3 56 0 1 10 1 2 67 8 10 46 25 25 103 chain 285592 chr3 198295559 + 43381224 43385902 L1PB1 5432 + 1473 5422 7268 77 3 0 444 0 1 273 0 3 44 20 0 140 312 0 30 9 3 56 12 38 86 0 1 165 3 0 57 1 4 111 0 3 99 314 0 38 91 0 195 0 1 43 4 11 336 7 0 312 0 1 8 9 14 138 0 2 8 0 1 349 10 6 28 6 10 153 6 13 35 1 2 120 9 11 160 1 0 8 2 3 24 8 6 11 7 3 10 2 0 9 20 16 27 2 1 16 2 1 37 0 8 12 1 0 5 32 8 18 3 1 5 1 0 38 6 5 17 2 1 11 1 0 18 chain 3768 chr3 198295559 + 43392956 43393004 MER3 215 + 115 163 93075 48 chain 3630 chr3 198295559 + 43398781 43398823 MIR 256 + 103 145 94181 42 chain 8266 chr3 198295559 + 43428733 43428965 Tigger4a 237 + 0 237 74247 27 10 0 9 0 16 9 88 90 29 3 0 57 chain 21649 chr3 198295559 + 43444880 43445144 AluY 311 + 39 304 54292 93 0 1 171 chain 117723 chr3 198295559 + 43461820 43463824 THE1B-int 1605 + 20 1590 15931 406 316 25 178 6 10 572 177 18 11 1 7 195 12 14 27 0 4 103 chain 7679 chr3 198295559 + 43472496 43472590 HY1 111 + 15 107 75683 66 2 0 26 chain 13778 chr3 198295559 + 43482228 43482392 MER4D1 891 + 721 884 63913 100 1 0 63 chain 28422 chr3 198295559 + 43485275 43485625 LTR17 781 + 389 773 44231 134 5 17 188 0 22 23 chain 109611 chr3 198295559 + 43487821 43489014 L1PA3long 6157 + 4648 5841 17111 1193 chain 7524 chr3 198295559 + 43492008 43492096 L1P2 5180 + 982 1071 76066 56 0 1 32 chain 103523 chr3 198295559 + 43492112 43493425 L1PA7 6471 + 5132 6469 17876 467 0 4 16 3 2 542 36 47 97 0 1 67 0 11 73 2 0 10 chain 53121 chr3 198295559 + 43508359 43508954 L1PA5 6144 + 5549 6144 28524 595 chain 31541 chr3 198295559 + 43508995 43509362 L1PA5 6144 + 5761 6128 40710 367 chain 67791 chr3 198295559 + 43518120 43519187 MER11B 1079 + 0 1074 24498 45 10 101 17 91 0 57 0 5 129 3 6 65 19 20 92 0 1 4 6 5 33 11 15 146 10 0 29 0 2 48 5 6 41 0 1 16 4 5 162 1 0 23 chain 550375 chr3 198295559 + 43565822 43571847 L1PA2 6032 + 1 6031 718 256 1 0 730 0 3 1404 1 0 1835 0 4 1633 5 0 7 0 5 153 chain 530236 chr3 198295559 + 43591620 43597763 L1PA5 6144 + 0 6135 1818 150 9 11 791 0 1 212 15 6 99 5 0 277 0 1 475 1 0 1009 1 0 796 0 2 1173 0 1 17 1 0 551 0 2 407 16 16 138 chain 4459 chr3 198295559 + 43602077 43602159 LTR16B1 483 + 282 367 88564 48 20 23 14 chain 31404 chr3 198295559 + 43624308 43624732 MSTA 426 + 0 426 40810 194 11 12 131 8 9 80 chain 85129 chr3 198295559 + 43628165 43629210 MER11C 1089 + 0 1063 20597 247 0 9 61 0 4 228 22 23 118 0 4 5 1 0 38 0 1 74 1 0 53 0 1 197 chain 3889 chr3 198295559 + 43633174 43633245 MADE1 96 - 9 96 92222 29 5 21 37 chain 23979 chr3 198295559 + 43639493 43639790 AluSc5 308 + 11 295 50825 107 0 1 48 14 0 128 chain 369900 chr3 198295559 + 43660973 43665514 L1PA7 6471 + 1874 6451 5659 161 1 0 605 0 1 657 8 5 181 2 13 47 0 4 22 0 3 637 0 2 275 0 1 51 15 14 54 4 6 50 0 8 278 0 1 649 0 4 17 2 1 238 0 3 290 0 1 152 0 8 8 11 4 126 chain 29489 chr3 198295559 + 43678307 43678744 LTR2 463 + 0 445 42622 55 0 3 151 3 0 12 0 5 108 35 0 8 14 52 51 chain 485504 chr3 198295559 + 43678954 43684459 L1PA4 6152 + 0 5519 3520 928 0 4 521 0 4 387 0 4 705 0 1 115 1 0 1748 0 2 1100 chain 5615 chr3 198295559 + 43693272 43693341 MER63A 208 + 86 155 82733 69 chain 3243 chr3 198295559 + 43778379 43778420 MLT1F2 592 + 64 106 97552 33 0 1 8 chain 248999 chr3 198295559 + 43806039 43809622 L1PB1 5432 + 2028 5424 8267 333 21 22 42 6 0 74 0 1 494 0 1 32 9 12 271 0 1 267 3 0 151 16 12 211 5 4 116 10 24 407 0 13 112 4 0 75 4 5 23 4 0 81 15 22 269 191 0 11 1 0 24 26 20 9 2 0 53 2 1 16 16 31 13 1 0 15 32 21 10 8 5 14 2 0 23 2 1 21 1 0 13 1 0 16 1 0 4 chain 320270 chr3 198295559 + 43845721 43849634 L1PA8A 6298 + 2292 6290 6404 141 4 60 8 2 0 111 0 1 528 0 2 168 0 4 124 0 3 24 5 0 15 0 8 374 11 12 1261 1 0 86 3 4 147 0 2 116 2 1 78 0 2 175 0 6 126 0 6 47 0 1 269 0 1 87 chain 3008 chr3 198295559 + 43853925 43854427 LTR33A_ 513 + 1 462 99766 6 4 0 24 138 130 19 287 258 24 chain 33727 chr3 198295559 + 43888171 43888646 L1MA2 4263 + 3610 4075 38897 53 1 0 146 3 0 143 12 13 91 10 3 16 chain 3736 chr3 198295559 + 44228952 44229002 MER53 195 + 121 171 93352 50 chain 21461 chr3 198295559 + 44265289 44265577 AluSg7 307 + 10 293 54568 69 0 3 42 5 6 156 9 0 7 chain 75276 chr3 198295559 + 44299290 44300112 L1PA3long 6157 + 5335 6157 22776 822 chain 5903 chr3 198295559 + 44404773 44404852 MADE1 96 + 0 96 81472 37 0 18 10 1 0 31 chain 33828 chr3 198295559 + 44438626 44439010 L1PA3long 6157 + 5757 6146 38827 258 1 0 119 0 6 6 chain 2750 chr3 198295559 + 44492862 44492908 MLT1A 405 + 0 51 101972 14 5 10 27 chain 7814 chr3 198295559 + 44521855 44521973 PrimLTR79 487 + 36 174 75332 14 0 16 4 1 0 15 0 4 65 3 4 16 chain 37737 chr3 198295559 + 44522607 44523057 LTR7C 471 + 0 449 36249 277 2 1 171 chain 46928 chr3 198295559 + 44534488 44535059 LTR14C 587 + 0 585 30689 154 0 1 276 5 13 5 0 1 103 3 7 25 chain 73408 chr3 198295559 + 44694501 44695346 L1PA3long 6157 + 5312 6157 23234 691 7 0 6 1 8 140 chain 65061 chr3 198295559 + 44696970 44698366 L1PB1 5432 + 4369 5422 25175 71 10 6 37 1 2 22 7 8 111 3 0 79 4 6 86 0 12 32 0 1 195 1 2 32 1 6 26 1 2 8 2 1 20 1 0 12 1 0 10 9 4 8 2 0 52 2 1 15 1 0 44 1 0 16 23 12 18 355 22 22 1 0 21 1 0 13 2 1 17 chain 6421 chr3 198295559 + 44748208 44748306 MER44A 345 + 80 190 79603 21 0 10 7 8 0 55 0 10 7 chain 4950 chr3 198295559 + 44868616 44868682 MLT1A 405 + 289 354 85889 48 1 0 17 chain 10201 chr3 198295559 + 44935629 44935756 LTR56 451 + 189 326 70010 100 0 10 27 chain 22783 chr3 198295559 + 44935759 44936100 L1PA14 3548 + 3155 3482 52698 34 1 0 31 2 1 111 1 0 10 0 1 36 4 2 12 1 0 5 1 0 21 1 0 36 6 0 10 1 0 17 chain 18320 chr3 198295559 + 44976819 44977030 AluSc 308 + 18 232 58337 58 0 6 49 3 0 101 chain 10733 chr3 198295559 + 45061978 45062118 MER41A 554 + 413 554 68980 121 1 2 18 chain 6833 chr3 198295559 + 45062645 45062739 MER41B 635 + 511 610 78191 38 7 12 49 chain 6424 chr3 198295559 + 45068442 45068610 L1PB1 5432 + 5264 5411 79589 17 2 1 14 25 13 18 8 5 14 2 0 24 2 1 20 1 0 13 1 0 7 chain 125689 chr3 198295559 + 45076709 45078291 THE1A-int 1579 + 0 1579 14602 15 14 15 330 2 3 217 0 1 75 2 1 459 5 0 463 chain 11225 chr3 198295559 + 45162515 45162664 LTR49 580 + 0 149 68210 74 1 2 59 1 0 14 chain 29507 chr3 198295559 + 45238462 45238953 MER1A 529 + 0 529 42596 15 20 48 21 51 46 35 4 10 187 8 13 81 11 15 58 chain 12625 chr3 198295559 + 45307158 45307429 LTR12C 1709 + 932 1086 65766 114 117 0 40 chain 753 chr3 198295559 + 45307314 45307347 LTR12C 1709 + 650 683 84890 33 chain 3347 chr3 198295559 + 45307429 45307540 LTR12C 1709 + 963 1037 67720 41 43 6 27 chain 3562 chr3 198295559 + 45344952 45345072 MLT1G 592 + 432 555 94732 34 66 69 20 chain 3867 chr3 198295559 + 45365971 45366014 MIR 256 + 5 48 92373 43 chain 21532 chr3 198295559 + 45371024 45371340 L1M1 2793 + 1088 1396 54462 90 1 0 70 4 0 14 0 1 4 34 29 94 0 1 5 chain 50879 chr3 198295559 + 45373657 45374246 LTR10C 591 + 0 591 29248 508 0 2 81 chain 2931 chr3 198295559 + 45416739 45416772 MER3 215 - 135 168 100574 33 chain 27731 chr3 198295559 + 45444381 45444685 AluYa5 310 + 0 303 45276 109 2 1 193 chain 4724 chr3 198295559 + 45560940 45561001 MER58A 224 + 131 192 87108 61 chain 9037 chr3 198295559 + 45569363 45569479 LTR8 732 + 39 159 72482 22 0 4 94 chain 40221 chr3 198295559 + 45570826 45571289 LTR2 463 + 0 463 34506 463 chain 47655 chr3 198295559 + 45685820 45686375 LTR6B 557 + 0 557 30419 48 1 0 92 0 1 218 0 1 41 2 0 92 0 1 6 0 1 33 0 1 22 chain 7800 chr3 198295559 + 45699202 45699287 L1PA2 6032 + 5939 6024 75377 85 chain 3171 chr3 198295559 + 45708076 45708118 Tigger6a 1079 + 933 972 98199 25 3 0 14 chain 29666 chr3 198295559 + 45785230 45785610 MLT2A1 477 + 0 385 42415 142 8 9 13 5 9 212 chain 3333 chr3 198295559 + 45792763 45792862 MER63A 208 + 95 195 96744 29 47 48 23 chain 7177 chr3 198295559 + 45814641 45814726 BC200 147 + 42 127 77021 85 chain 80017 chr3 198295559 + 45855135 45856116 L1PA10 4194 + 3158 4150 21622 443 0 9 186 0 4 282 1 2 32 3 0 34 chain 5376 chr3 198295559 + 45865722 45865791 L1ME1 1623 + 1243 1312 83815 69 chain 7312 chr3 198295559 + 45868898 45868998 MER5A1 166 + 38 129 76627 8 9 0 83 chain 9205 chr3 198295559 + 45878632 45878747 L1MC1 2226 + 1278 1393 72115 115 chain 13733 chr3 198295559 + 45927061 45927268 MER30 238 + 0 238 63971 16 0 18 72 17 27 63 6 9 33 chain 23531 chr3 198295559 + 45997656 45997937 AluSp 311 + 0 277 51533 35 7 3 239 chain 4957 chr3 198295559 + 46000356 46000442 MER50 708 + 7 95 85851 35 17 19 34 chain 7297 chr3 198295559 + 46077673 46077777 LTR56 451 + 214 320 76679 75 5 7 24 chain 406240 chr3 198295559 + 46148347 46152778 L1PA3long 6157 + 1701 6147 5068 615 0 14 846 0 1 1116 0 2 1600 1 0 101 2 1 150 chain 3036 chr3 198295559 + 46207133 46207169 MER63A 208 + 172 208 99450 36 chain 3433 chr3 198295559 + 46209924 46209962 MER5A 189 + 0 38 95798 38 chain 254128 chr3 198295559 + 46273084 46276066 L1PA7 6471 + 3477 6466 8132 26 1 0 41 0 4 474 0 1 280 0 2 1294 4 5 10 0 3 842 3 0 7 chain 21976 chr3 198295559 + 46316907 46317247 THE1B 368 + 0 363 53871 42 0 6 7 0 9 105 1 0 29 35 45 42 8 7 71 chain 31706 chr3 198295559 + 46325955 46326374 LTR3A 482 + 0 440 40574 156 11 19 18 0 14 71 2 1 161 chain 4455 chr3 198295559 + 46326619 46326693 HERVK3-int 3053 + 136 196 88583 13 14 0 47 chain 11436 chr3 198295559 + 46335611 46335759 HERVK22-int 3844 + 1357 1572 67855 130 0 67 18 chain 17308 chr3 198295559 + 46340666 46341145 L1PB1 5432 + 5029 5414 59445 50 0 4 20 79 11 26 0 3 4 5 0 10 6 2 9 2 0 46 12 11 11 1 0 43 2 1 12 71 55 23 1 0 22 5 4 8 1 0 10 chain 12216 chr3 198295559 + 46392185 46392338 HERVH-int 3825 + 2123 2276 66449 129 1 0 4 0 1 19 chain 36573 chr3 198295559 + 46426542 46427011 LTR3A 482 + 2 482 37027 191 0 14 53 14 12 135 1 0 75 chain 78726 chr3 198295559 + 46431547 46432558 MER11A 1151 + 6 1151 21935 102 0 2 28 0 93 63 4 0 32 0 2 115 0 1 94 0 1 145 10 11 50 0 4 56 21 54 262 0 1 29 chain 37399 chr3 198295559 + 46433163 46433630 LTR3A 482 + 2 482 36473 24 0 1 166 0 14 51 2 0 224 chain 48381 chr3 198295559 + 46485856 46486481 LTR71B 605 + 0 603 30159 134 4 0 216 18 0 253 chain 151032 chr3 198295559 + 46493936 46495681 SVA_F 1814 + 6 1794 12285 143 12 0 549 0 40 123 0 50 36 0 15 32 1 0 105 48 0 29 1 0 666 chain 4095 chr3 198295559 + 46494937 46494985 SVA_F 1814 + 858 908 57259 22 0 2 26 chain 13837 chr3 198295559 + 46509537 46509731 MER83 447 + 252 447 63813 60 1 0 87 0 1 8 10 11 28 chain 35167 chr3 198295559 + 46557049 46557496 LTR7 482 + 0 482 37912 196 1 0 29 0 1 4 0 31 123 1 3 32 12 14 49 chain 128120 chr3 198295559 + 46567927 46570182 L1MA1 4479 + 2284 4147 14262 140 0 1 4 8 7 90 1 0 4 0 1 20 0 1 52 3 0 9 9 5 38 1 0 12 1 0 90 19 17 29 1 0 62 2 0 72 2 1 19 1 0 27 3 1 119 0 2 43 9 7 21 9 0 39 322 0 34 1 0 12 5 0 48 5 0 78 3 0 100 2 4 26 2 0 61 1 2 101 0 1 31 1 0 24 2 0 16 9 8 8 1 0 55 1 0 20 2 0 13 1 0 76 50 31 112 1 0 29 12 10 25 1 0 5 chain 19938 chr3 198295559 + 46591164 46591484 L1PBa 3878 + 3492 3800 56469 174 0 1 50 2 1 20 2 0 12 1 0 6 11 6 10 1 0 5 6 4 12 1 0 7 chain 16064 chr3 198295559 + 46592687 46593018 L1PB1 5432 + 5114 5420 60942 24 1 0 9 16 11 9 2 0 53 2 1 15 1 0 45 1 0 15 18 12 16 27 22 24 1 0 21 1 0 13 1 0 16 chain 12305 chr3 198295559 + 46594007 46594162 L1PB 1623 + 949 1100 66284 13 4 0 138 chain 26013 chr3 198295559 + 46655890 46656305 L1PB2 3958 + 3410 3811 47698 27 0 2 11 6 1 94 35 31 41 1 0 11 7 5 48 2 1 71 2 0 22 1 0 36 chain 465902 chr3 198295559 + 46790519 46796071 L1PA7 6471 + 872 6470 3965 36 0 3 639 0 1 47 0 1 206 2 1 58 0 1 585 1 0 138 2 1 51 10 11 251 0 2 432 1 0 17 2 1 257 0 1 31 0 29 164 1 0 255 2 3 25 0 1 154 2 0 20 0 1 193 0 1 82 1 0 7 0 1 234 0 4 111 0 1 187 0 1 134 1 0 181 4 5 177 0 3 85 2 3 126 12 13 626 chain 9742 chr3 198295559 + 46796795 46796956 Tigger3b 1229 + 577 741 70954 109 29 31 15 0 1 8 chain 25173 chr3 198295559 + 46819907 46820248 THE1B 368 + 13 357 49000 27 0 5 58 6 7 58 1 0 4 3 2 119 1 0 64 chain 23620 chr3 198295559 + 46914632 46914920 AluSc 308 + 5 295 51396 6 0 2 282 chain 47920 chr3 198295559 + 46957576 46958589 PABL_A 660 + 0 660 30323 34 5 9 42 362 7 95 0 1 89 7 6 73 0 1 221 14 11 71 chain 136569 chr3 198295559 + 46963423 46964951 SVA_D 2077 + 0 2062 13381 12 6 1 18 0 7 502 0 40 331 0 489 44 0 1 4 0 1 95 0 1 516 chain 12471 chr3 198295559 + 46970183 46970396 MER30 238 + 0 238 66029 16 9 20 72 4 0 10 2 20 15 1 7 7 6 0 71 chain 94430 chr3 198295559 + 47025819 47026968 L1PA7 6471 + 5324 6467 18977 297 1 0 25 1 2 184 0 1 373 3 1 250 5 0 10 chain 3635 chr3 198295559 + 47050100 47050144 L1MA4 2864 + 2766 2809 94134 7 1 0 36 chain 25155 chr3 198295559 + 47157595 47157901 AluSp 311 + 4 310 49024 306 chain 5803 chr3 198295559 + 47182374 47182443 LTR23 429 + 156 225 81904 69 chain 5961 chr3 198295559 + 47195983 47196054 LTR37A 408 + 67 138 81227 71 chain 2916 chr3 198295559 + 47204995 47205036 MER101-int 1169 + 651 689 100711 30 3 0 8 chain 17112 chr3 198295559 + 47206952 47207742 L1MA3 4352 + 3916 4351 59678 134 507 158 44 8 6 22 1 3 5 1 0 26 1 0 14 6 2 21 chain 19654 chr3 198295559 + 47238968 47239216 AluSp 311 + 52 298 56851 99 3 1 146 chain 126672 chr3 198295559 + 47255720 47257150 SVA_D 2077 + 0 2070 14455 25 5 0 559 0 156 176 1 490 664 chain 76051 chr3 198295559 + 47259533 47260501 LTR5_Hs 974 + 0 974 22551 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 6938 chr3 198295559 + 47292513 47292623 L1MB3 1562 + 1122 1231 77816 69 14 13 27 chain 5368 chr3 198295559 + 47299417 47299491 MLT2C2 476 + 122 195 83859 68 1 0 5 chain 37799 chr3 198295559 + 47358553 47362397 MSTB-int 1649 + 91 1649 36208 240 1 16 9 1 3 103 2298 901 141 16 20 13 225 0 39 704 20 36 1 0 17 chain 21501 chr3 198295559 + 47432042 47432343 AluSc 308 + 10 308 54508 53 13 9 50 0 1 8 1 0 129 5 7 11 2 1 29 chain 5475 chr3 198295559 + 47438447 47438514 MER41A 554 + 398 466 83329 29 0 1 38 chain 28126 chr3 198295559 + 47472151 47472450 AluYb8 318 + 0 298 44673 132 1 0 166 chain 33020 chr3 198295559 + 47534077 47534508 MER83 447 + 0 429 39501 399 0 1 5 10 7 17 chain 52641 chr3 198295559 + 47842068 47842718 LTR6A 649 + 0 649 28688 92 1 0 343 1 0 193 0 1 20 chain 141964 chr3 198295559 + 47887023 47888693 LTR12C 1709 + 0 1709 12940 309 0 1 4 1 0 155 0 1 97 7 4 266 1 0 114 0 41 119 1 0 6 2 0 107 0 4 481 chain 7478 chr3 198295559 + 47940688 47940799 Charlie1a 1436 + 851 965 76179 38 11 14 62 chain 111807 chr3 198295559 + 47951315 47952639 SVA_C 1631 + 0 1368 16835 15 0 1 6 2 0 518 40 0 315 17 18 5 0 1 31 2 0 3 2 0 30 0 87 338 chain 18655 chr3 198295559 + 47992921 47993151 HSMAR2 1300 + 84 314 57940 230 chain 446705 chr3 198295559 + 48004143 48010617 HERVL-int 5654 + 5 5654 4443 93 6 7 587 11 1 7 0 15 130 1 3 21 14 20 61 306 9 163 1 0 598 0 2 22 4 0 140 17 54 424 0 1 100 1 0 814 283 0 100 5 0 491 0 4 39 0 4 49 0 4 119 0 9 9 5 11 155 1 2 150 330 5 395 8 9 144 6 5 246 1 0 46 0 3 129 0 5 16 2 0 4 0 1 184 0 3 36 chain 28144 chr3 198295559 + 48010623 48011040 MLT2A1 477 + 7 477 44647 8 0 4 29 0 2 87 0 1 24 41 50 77 0 1 4 1 0 89 10 48 27 1 0 19 chain 4349 chr3 198295559 + 48041740 48041809 L1MB8 1703 + 236 306 89175 17 6 7 46 chain 164906 chr3 198295559 + 48055241 48057618 SVA_F 1814 + 9 1803 11417 879 1 0 26 49 0 34 402 14 170 143 0 38 1 0 17 1 0 616 chain 3466 chr3 198295559 + 48056149 48056196 SVA_F 1814 + 1107 1154 88340 20 0 1 10 1 0 16 chain 9611 chr3 198295559 + 48056233 48056358 SVA_F 1814 + 966 1091 45452 125 chain 15386 chr3 198295559 + 48056407 48056632 SVA_F 1814 + 899 1138 39493 49 3 18 35 1 0 137 chain 3787 chr3 198295559 + 48056815 48056860 SVA_F 1814 + 905 947 83012 32 3 0 10 chain 3837 chr3 198295559 + 48056902 48056945 SVA_F 1814 + 898 941 60167 43 chain 118226 chr3 198295559 + 48061181 48062514 SVA_C 1631 + 18 1631 15843 6 0 1 12 1 4 193 1 2 267 0 270 212 0 4 14 0 1 627 chain 54865 chr3 198295559 + 48073811 48074469 L1PA5 6144 + 5489 6144 27918 56 1 0 116 7 6 456 2 1 20 chain 1165 chr3 198295559 + 48114218 48114301 MER4D1 891 + 675 758 62781 83 chain 42017 chr3 198295559 + 48114647 48115144 LTR10C 591 + 0 589 33350 12 0 5 152 0 85 254 0 2 79 chain 1587 chr3 198295559 + 48115146 48115259 MER4D1 891 + 771 884 62781 113 chain 40184 chr3 198295559 + 48115871 48116381 LTR10D 510 + 2 509 34529 69 23 5 15 0 17 26 3 0 128 0 1 246 chain 43436 chr3 198295559 + 48201523 48203041 MER41A 554 + 0 554 32485 150 964 0 404 chain 20074 chr3 198295559 + 48203920 48204894 PABL_A-int 1935 + 526 889 56288 23 1 0 47 8 0 8 5 10 31 673 63 126 0 3 52 chain 135927 chr3 198295559 + 48210891 48213100 SVA_F 1814 + 335 1814 13444 526 678 0 26 0 1 59 0 15 50 18 1 176 50 0 615 1 0 10 chain 34256 chr3 198295559 + 48211439 48212095 SVA_F 1814 + 880 1277 38021 12 0 1 38 274 0 17 0 15 311 1 0 3 chain 6293 chr3 198295559 + 48211493 48211689 SVA_F 1814 + 937 1098 46311 10 1 15 13 32 0 5 17 0 118 chain 2825 chr3 198295559 + 48211517 48211549 SVA_F 1814 + 1102 1134 57884 32 chain 1799 chr3 198295559 + 48211731 48211763 SVA_F 1814 + 1139 1171 74915 32 chain 4414 chr3 198295559 + 48212424 48212474 SVA_F 1814 + 964 1013 54312 47 1 0 2 chain 4665 chr3 198295559 + 48216900 48216995 MER3 215 + 6 117 87456 44 22 38 29 chain 3635 chr3 198295559 + 48240620 48240660 Charlie1b 519 + 446 486 94142 40 chain 39168 chr3 198295559 + 48272794 48273298 LTR10G 522 + 20 522 35237 20 1 0 24 0 1 147 0 2 108 1 0 31 0 1 94 5 1 73 chain 35413 chr3 198295559 + 48278317 48278831 LTR10G 522 + 0 522 37770 16 0 4 20 1 0 24 0 1 58 1 0 56 14 14 157 19 16 80 0 1 5 0 3 19 11 15 33 chain 10184 chr3 198295559 + 48312218 48312349 L1MB5 1630 + 304 433 70045 74 2 0 55 chain 13427 chr3 198295559 + 48489095 48489309 MER30 238 + 0 238 64424 15 24 24 80 0 20 14 1 7 32 2 0 46 chain 53177 chr3 198295559 + 48490537 48491612 MER4E1 777 + 0 777 28505 167 2 1 163 1 20 85 0 1 17 0 1 5 1 0 4 11 9 47 33 24 7 2 0 28 308 0 173 0 2 7 1 3 13 chain 5905 chr3 198295559 + 48495404 48495495 MER21B 843 + 734 820 81468 15 4 0 42 0 2 13 3 0 14 chain 25234 chr3 198295559 + 48498802 48499100 AluSp 311 + 3 300 48891 122 1 0 175 chain 33919 chr3 198295559 + 48506433 48506861 LTR2 463 + 0 445 38771 300 8 24 31 19 20 70 chain 29108 chr3 198295559 + 48615602 48615906 AluYa5 310 + 1 305 43175 304 chain 168436 chr3 198295559 + 48733472 48735452 SVA_D 2077 + 0 2077 11195 896 14 105 8 0 1 26 0 2 53 0 2 9 0 79 201 0 8 11 8 0 117 78 0 559 chain 3076 chr3 198295559 + 48734815 48734862 SVA_D 2077 + 1293 1339 41229 42 1 0 4 chain 1261 chr3 198295559 + 48734862 48734893 SVA_D 2077 + 1135 1166 70814 31 chain 3175 chr3 198295559 + 48784717 48784772 MER6B 211 - 0 59 98143 13 9 13 33 chain 25485 chr3 198295559 + 48791006 48791313 AluSc5 308 + 0 307 48508 307 chain 82990 chr3 198295559 + 48842238 48844982 L1PA3long 6157 + 3423 6149 21018 1146 25 0 1443 0 7 130 chain 24803 chr3 198295559 + 48865858 48866151 AluSc5 308 + 10 296 49585 116 5 0 160 2 0 10 chain 69997 chr3 198295559 + 48889662 48891147 LTR13A 966 + 0 964 23996 76 0 10 42 0 1 332 9 11 92 275 49 153 313 0 64 6 9 42 0 2 81 chain 7436 chr3 198295559 + 48940501 48940587 MER11B 1079 + 10 96 76288 86 chain 19873 chr3 198295559 + 49050054 49050273 AluYk11 308 + 0 306 56577 81 0 87 138 chain 22157 chr3 198295559 + 49095293 49095587 AluSz6 309 + 4 300 53629 257 17 19 20 chain 76231 chr3 198295559 + 49140358 49141442 MER11A 1151 + 8 1145 22505 71 0 8 143 0 4 60 0 11 11 37 0 366 6 9 11 3 4 37 0 4 67 0 1 19 6 64 92 9 8 54 0 2 28 10 9 54 chain 14463 chr3 198295559 + 49156677 49156874 Tigger3b 1229 + 339 538 62950 41 0 1 23 0 3 36 7 5 90 chain 90787 chr3 198295559 + 49216522 49217650 L1PA6 6164 + 5032 6162 19538 145 1 2 135 0 6 120 1 0 177 0 1 63 6 6 249 1 3 54 17 10 159 chain 39578 chr3 198295559 + 49219139 49219649 MER9a3 513 + 0 513 34975 18 0 2 91 0 1 144 4 3 174 0 1 79 chain 370682 chr3 198295559 + 49229258 49233690 HERVK9-int 4720 + 258 4720 5638 52 9 12 210 0 1 38 0 4 130 0 1 580 0 1 4 0 10 110 0 1 1168 0 4 37 1 0 429 0 4 245 0 1 7 1 0 268 43 42 172 1 2 356 4 7 212 1 0 354 chain 31752 chr3 198295559 + 49233690 49234078 MER9a3 513 + 0 390 40538 18 0 2 90 0 1 145 1 0 134 chain 8035 chr3 198295559 + 49397161 49397426 L1MB8 1703 + 1452 1657 74789 31 7 8 26 0 5 14 4 5 47 115 48 21 chain 23524 chr3 198295559 + 49435194 49435495 AluSp 311 + 1 307 51545 63 1 3 74 0 1 31 4 6 128 chain 21887 chr3 198295559 + 49453435 49453704 AluSg4 309 + 8 274 53986 123 2 0 75 1 0 68 chain 47371 chr3 198295559 + 49482080 49482664 LTR5A 1029 + 204 794 30514 510 9 5 52 0 10 13 chain 25570 chr3 198295559 + 49527243 49527535 AluYk4 311 + 1 295 48368 171 7 9 114 chain 10119 chr3 198295559 + 49617136 49617266 L1PA8 5853 + 5725 5853 70164 15 2 1 19 1 0 93 chain 43089 chr3 198295559 + 49631861 49632455 L1MB3 1562 + 121 714 32721 12 9 8 90 1 5 190 1 0 185 6 3 100 chain 16564 chr3 198295559 + 49788520 49788740 L1MA2 4263 + 3833 4051 60298 123 11 9 86 chain 24162 chr3 198295559 + 49941386 49941669 AluSp 311 + 10 311 50557 44 0 18 239 chain 62129 chr3 198295559 + 50030977 50031738 L1PA5 6144 + 5397 6141 25839 35 24 6 439 9 10 107 0 1 111 1 0 35 chain 2901 chr3 198295559 + 50092989 50093019 AluJb 308 - 43 73 100838 30 chain 2901 chr3 198295559 + 50129584 50129614 LTR32 486 + 333 363 100839 30 chain 30621 chr3 198295559 + 50309029 50313997 MER4-int 2692 + 1491 2691 41449 60 0 2 84 311 0 115 1 3 87 4113 627 14 1 8 6 7 0 13 1 0 57 0 10 8 4 20 86 chain 72687 chr3 198295559 + 50519891 50520848 LTR5_Hs 974 + 0 974 23382 115 5 13 32 1 3 126 0 1 177 0 1 177 0 1 10 1 0 163 8 15 19 20 18 103 chain 4354 chr3 198295559 + 50584854 50584921 MLT1D-int 1367 + 45 106 89150 18 6 0 43 chain 108944 chr3 198295559 + 50723509 50724837 L1PA7 6471 + 5122 6461 17190 492 0 3 93 2 1 211 1 2 66 0 3 248 1 3 16 0 3 181 0 1 12 1 0 4 chain 144300 chr3 198295559 + 50742113 50743753 L1P1 4361 + 897 2544 12751 830 0 4 241 1 0 408 0 4 160 chain 45722 chr3 198295559 + 50761742 50762266 L1PA5 6144 + 5618 6144 31198 115 0 1 9 0 1 400 chain 10788 chr3 198295559 + 50764287 50764516 MER2 342 + 20 293 68882 29 79 123 121 chain 23921 chr3 198295559 + 50768343 50768600 L1PA5 6144 + 3652 3909 50912 257 chain 72062 chr3 198295559 + 50770019 50771292 L1MA1 4479 + 2958 4190 23520 27 2 0 22 0 2 146 4 1 95 5 4 95 0 1 40 57 52 77 4 3 105 3 41 43 63 3 24 3 1 76 32 29 14 1 0 18 0 14 56 1 0 5 3 0 23 0 1 102 1 0 28 12 10 26 1 0 9 1 0 11 4 1 9 7 0 18 chain 38267 chr3 198295559 + 50832082 50832520 L1PA7 6471 + 5180 5618 35864 438 chain 83313 chr3 198295559 + 50857445 50858422 L1PA6 6164 + 5164 6149 20961 150 0 8 827 chain 24746 chr3 198295559 + 50874876 50875214 L1PA8 5853 + 5510 5853 49662 54 1 0 46 3 1 70 4 11 7 0 3 38 2 1 21 1 0 91 chain 12050 chr3 198295559 + 50876850 50877064 MER30 238 + 0 238 66758 14 28 35 57 4 0 7 8 29 96 chain 468421 chr3 198295559 + 50877846 50883274 L1PA5 6144 + 704 6143 3894 465 9 0 265 0 2 877 1 0 226 1 0 589 0 5 1096 0 9 103 0 4 1785 1 3 10 chain 115068 chr3 198295559 + 50886756 50888221 L1P1 4361 + 2874 4341 16378 127 0 1 578 2 1 100 0 2 5 2 0 224 60 62 31 0 3 140 1 0 157 1 0 23 2 1 12 chain 14252 chr3 198295559 + 50893806 50893973 L1PA5 6144 + 5817 5984 63265 167 chain 13747 chr3 198295559 + 50893980 50894137 L1PA5 6144 + 5984 6141 63951 157 chain 3399 chr3 198295559 + 50927378 50927416 L1MA4 2864 + 2766 2804 96070 38 chain 16683 chr3 198295559 + 51021187 51021391 L1PA10 4194 + 1033 1237 60171 123 0 1 51 2 1 28 chain 22735 chr3 198295559 + 51036707 51037063 THE1B 368 + 1 368 52776 76 5 6 24 2 3 19 21 23 20 2 1 133 5 13 49 chain 78624 chr3 198295559 + 51060823 51061714 L1PA4 6152 + 5252 6143 21952 891 chain 51839 chr3 198295559 + 51132635 51133823 HERVL-int 5654 + 428 1087 28926 529 538 8 116 0 1 5 chain 13092 chr3 198295559 + 51151338 51151512 L1P2 5180 + 888 2598 64941 128 0 1536 46 chain 19477 chr3 198295559 + 51168186 51168609 L1PREC2 3366 + 2667 3048 57057 8 1 0 77 9 7 47 1 0 44 1 0 4 3 0 13 4 9 10 15 2 12 15 10 12 2 0 29 4 1 11 36 22 21 6 4 38 chain 7983 chr3 198295559 + 51170009 51170214 Tigger4a 237 + 29 236 74919 34 79 80 36 3 4 53 chain 1836 chr3 198295559 + 51185604 51185773 THE1B 368 + 0 172 48741 13 2 0 27 0 5 127 chain 11883 chr3 198295559 + 51185786 51185980 THE1B 368 + 183 368 67050 10 30 22 79 1 0 74 chain 122980 chr3 198295559 + 51185981 51187565 THE1B-int 1605 + 1 1605 15025 85 0 4 340 1 26 256 3 2 17 8 1 467 6 5 401 chain 11318 chr3 198295559 + 51187565 51187728 THE1B 368 + 0 172 68056 15 2 0 25 0 5 86 8 14 27 chain 2227 chr3 198295559 + 51187731 51187936 THE1B 368 + 173 368 48741 21 15 5 169 chain 551938 chr3 198295559 + 51199049 51205171 L1PA3long 6157 + 0 6152 611 710 0 7 358 1 0 114 0 3 104 0 1 114 0 9 213 2 0 759 0 4 9 1 0 734 0 5 670 1 2 541 0 4 1791 chain 164866 chr3 198295559 + 51248293 51250286 SVA_D 2077 + 135 2076 11419 653 39 0 120 3 0 12 2 38 29 0 51 143 48 0 207 0 1 4 58 8 44 2 0 341 0 2 288 chain 4007 chr3 198295559 + 51249294 51249342 SVA_D 2077 + 1308 1406 38844 31 0 50 17 chain 3214 chr3 198295559 + 51249553 51249611 SVA_D 2077 + 989 1049 50725 47 0 2 11 chain 520945 chr3 198295559 + 51261118 51268142 L1PA7 6471 + 0 6461 2229 135 0 1 91 10 12 169 1 3 260 2 1 707 1 0 1251 3 4 68 8 12 163 9 13 206 0 4 134 1 9 209 366 65 53 0 3 39 2 0 194 17 18 160 0 1 365 0 3 68 0 1 203 0 19 551 1 2 42 1 2 379 0 9 303 0 1 81 324 0 291 7 0 8 1 8 140 chain 86501 chr3 198295559 + 51289721 51290685 L1PA5 6144 + 5166 6134 20326 131 0 4 833 chain 467774 chr3 198295559 + 51320025 51326070 L1PA7 6471 + 0 6470 3913 46 0 3 192 13 21 140 11 0 5 2 0 15 0 1 750 3 4 383 0 1 541 0 2 20 9 0 27 320 0 27 0 4 413 9 17 29 3 0 69 59 2 408 0 22 342 3 2 62 0 763 42 1 0 323 0 4 184 0 6 85 1 0 373 1 0 271 0 4 22 0 3 75 1 0 753 0 2 12 chain 115487 chr3 198295559 + 51368115 51369569 L1PA5 6144 + 14 1510 16314 111 1 15 19 0 12 618 1 0 26 0 17 237 4 7 94 9 0 147 0 5 6 6 1 74 1 0 81 0 7 19 chain 548447 chr3 198295559 + 51455920 51462072 L1PA4 6152 + 0 6151 839 456 12 6 118 1 0 740 0 1 4 2 0 48 0 1 1755 0 4 119 0 4 684 0 1 406 2 0 7 1 0 1797 chain 520693 chr3 198295559 + 51647858 51653935 L1PA6 6164 + 32 6158 2238 477 2 1 77 1 0 200 0 17 120 0 5 504 0 3 105 0 4 384 0 11 17 0 1 375 0 1 804 0 1 56 1 2 1168 0 4 122 1 2 157 0 5 229 1 0 520 1 0 649 1 0 105 chain 432245 chr3 198295559 + 51742806 51747980 HERV9-int 5642 + 4 5095 4714 44 0 1 188 0 3 16 0 1 343 2 0 116 6 0 79 5 4 49 2 0 255 80 0 15 4 0 488 10 1 304 0 1 704 1 0 4 0 1 1408 3 6 125 0 10 836 0 2 87 chain 26688 chr3 198295559 + 51786692 51787078 THE1A 353 + 0 353 46701 110 11 10 53 31 0 25 1 0 155 chain 125291 chr3 198295559 + 51787078 51788658 THE1A-int 1579 + 0 1579 14657 278 3 6 189 33 35 305 11 5 761 chain 62404 chr3 198295559 + 51849802 51850619 LTR12 884 + 0 884 25776 78 9 75 224 2 0 267 1 6 57 6 5 132 2 1 39 chain 67002 chr3 198295559 + 51856243 51857063 LTR12 884 + 0 884 24702 78 1 67 162 1 2 68 2 0 332 1 0 175 chain 150382 chr3 198295559 + 51857957 51859672 SVA_D 2077 + 7 2077 12323 6 5 0 18 1 0 185 1 0 672 24 166 6 0 1 115 0 225 664 6 0 12 chain 30884 chr3 198295559 + 51872485 51873023 L1MB3 1562 + 1038 1555 41235 124 29 31 8 1 0 12 0 4 40 1 5 80 10 9 70 52 24 22 1 0 57 1 0 16 0 1 14 chain 55660 chr3 198295559 + 51895798 51896547 MER4E1 777 + 0 769 27676 172 0 5 84 0 5 65 1 20 185 28 19 214 chain 39312 chr3 198295559 + 51896961 51897435 LTR10F 562 + 0 562 35138 115 0 84 32 3 0 273 0 7 51 chain 210988 chr3 198295559 + 51899290 51902302 HERVIP10FH-int 2884 + 151 2866 9319 62 3 0 186 4 0 223 2 1 62 1 0 50 0 1 348 0 1 119 2 0 176 4 1 7 3 0 11 2 1 6 1 0 61 6 1 130 8 0 15 62 39 14 20 3 43 22 10 42 10 0 15 5 4 265 7 4 198 5 4 20 1 0 365 1 0 66 1 0 50 1 0 17 1 0 13 10 4 35 209 22 9 2 0 11 chain 45313 chr3 198295559 + 51902373 51902910 LTR10F 562 + 0 562 31413 134 1 29 68 3 0 331 chain 14785 chr3 198295559 + 51905124 51905316 THE1B 368 + 173 368 62549 25 0 2 93 1 0 47 0 1 8 0 1 18 chain 124013 chr3 198295559 + 51905316 51906883 THE1B-int 1605 + 0 1605 14847 178 1 0 90 10 13 149 1 26 25 0 1 4 1 0 161 0 2 26 0 1 4 0 2 421 0 6 496 chain 14318 chr3 198295559 + 51907382 51907557 THE1B 368 + 190 366 63171 8 0 2 93 1 0 73 chain 40101 chr3 198295559 + 51915782 51916307 MER4B 649 + 2 572 34593 28 0 1 104 2 40 137 4 6 49 0 4 201 chain 101685 chr3 198295559 + 51990374 51991626 LTR12C 1709 + 0 1709 18102 270 6 0 28 9 0 352 0 278 143 0 47 106 0 4 114 0 29 69 0 101 36 0 10 107 0 3 12 chain 92913 chr3 198295559 + 52161377 52166688 MER4-int 2692 + 755 2692 19191 46 2055 314 12 1 0 38 54 62 93 10 8 88 4 3 14 1277 45 34 5 0 28 0 4 18 2 1 4 0 1 34 10 11 93 23 7 39 0 1 19 0 5 87 0 1 18 55 46 11 2 0 30 4 6 24 3 1 5 2 0 59 3 0 6 14 0 39 14 15 14 3 0 91 1 0 45 10 0 207 14 0 161 340 0 33 0 1 15 chain 20147 chr3 198295559 + 52166713 52167033 MER4A 717 + 365 673 56193 21 1 0 9 20 14 19 12 12 54 6 1 178 chain 8265 chr3 198295559 + 52173031 52173155 MER3 215 + 61 198 74249 97 10 23 17 chain 10796 chr3 198295559 + 52180265 52180405 L1P3 4156 + 4002 4139 68869 105 2 0 7 2 1 24 chain 5904 chr3 198295559 + 52497718 52497790 MER2 342 + 251 323 81470 72 chain 24283 chr3 198295559 + 52676264 52676600 THE1A 353 + 7 342 50362 38 1 0 65 1 0 83 6 5 11 5 7 126 chain 37452 chr3 198295559 + 52676611 52677076 THE1A-int 1579 + 0 471 36438 131 0 2 23 0 3 133 1 2 177 chain 7764 chr3 198295559 + 52713345 52713464 LTR43 600 + 402 520 75449 44 2 0 24 0 1 11 6 0 9 0 6 23 chain 4572 chr3 198295559 + 52714279 52714329 LTR54 533 + 2 52 87955 50 chain 15478 chr3 198295559 + 52725563 52725910 L1M4c 1769 + 1385 1734 61687 19 25 19 5 0 1 97 34 41 17 1 0 44 51 53 49 1 0 4 chain 83981 chr3 198295559 + 52728343 52729364 MER11A 1151 + 1 1151 20811 54 0 99 134 10 6 522 0 1 4 5 38 292 chain 28253 chr3 198295559 + 52766705 52767006 AluYb8 318 + 1 302 44478 301 chain 4123 chr3 198295559 + 52790451 52790567 MIRb 242 + 67 216 90629 42 52 85 22 chain 114134 chr3 198295559 + 52955444 52957532 L1PA10 4194 + 2675 4150 16537 296 0 1 164 3 1 226 0 1 37 620 0 245 0 2 88 2 1 106 0 2 140 2 0 94 14 23 14 3 0 34 chain 25185 chr3 198295559 + 52966040 52966337 AluY 311 + 5 297 48977 130 0 1 93 5 0 46 1 0 22 chain 10866 chr3 198295559 + 52981180 52981347 Tigger2 2703 + 979 1151 68751 79 7 13 45 9 8 27 chain 5325 chr3 198295559 + 53182166 53182273 MIR 256 + 26 132 84072 29 36 35 42 chain 2879 chr3 198295559 + 53215673 53215706 MER41B 635 + 514 547 101017 33 chain 5685 chr3 198295559 + 53269193 53269266 MLT2C1 407 + 0 75 82411 36 0 2 37 chain 511787 chr3 198295559 + 53391156 53397282 L1PA6 6164 + 0 6162 2673 213 0 5 3 4 0 13 0 5 171 1 0 100 1 0 277 0 17 489 0 1 67 11 12 41 6 1 6 0 5 26 2 0 404 0 4 469 5 0 860 0 1 515 0 2 247 0 1 413 0 4 125 0 2 10 0 1 223 0 1 145 1 0 409 0 5 111 1 0 620 1 2 136 chain 7017 chr3 198295559 + 53513245 53513359 Tigger3c 601 + 52 156 77544 60 14 6 31 2 0 7 chain 38239 chr3 198295559 + 53945891 53946358 LOR1a 498 + 9 491 35882 290 0 2 21 0 13 156 chain 26807 chr3 198295559 + 54017427 54017862 L1PA11 4918 + 4125 4517 46526 188 36 1 11 3 0 51 0 3 9 7 6 80 2 0 14 1 0 20 4 0 9 chain 4615 chr3 198295559 + 54070521 54070587 LTR10G 522 + 419 487 87728 27 3 5 36 chain 4454 chr3 198295559 + 54089205 54089278 MER65A 464 + 401 464 88587 12 14 0 34 0 4 13 chain 6101 chr3 198295559 + 54235037 54235110 L1MC3 1789 + 1091 1164 80721 73 chain 9046 chr3 198295559 + 54256287 54256412 MER85 139 + 5 139 72457 87 1 11 24 1 0 12 chain 86714 chr3 198295559 + 54277947 54278971 L1PA7 6471 + 5415 6447 20268 65 1 0 134 0 3 134 6 7 123 0 3 115 2 4 444 chain 542883 chr3 198295559 + 54284955 54291066 L1PA4 6152 + 12 6151 1143 568 1 0 219 0 1 979 0 2 571 0 2 714 0 4 417 0 1 450 0 1 16 0 2 176 0 13 1848 5 7 140 0 1 7 chain 43173 chr3 198295559 + 54344728 54345288 MER41A 554 + 0 554 32669 24 0 1 136 1 0 95 3 0 187 6 3 108 chain 3496 chr3 198295559 + 54404930 54404971 L1MA6 2487 + 1001 1042 95273 41 chain 59572 chr3 198295559 + 54436159 54436896 L1PA8 5853 + 5075 5805 26490 450 1 0 39 1 0 44 2 0 68 4 3 61 2 1 19 1 0 45 chain 523206 chr3 198295559 + 54468135 54474552 L1PA7 6471 + 0 6464 2132 97 3 4 157 6 7 97 0 1 4 7 6 25 0 3 2 0 2 10 2 1 4 0 1 34 8 7 285 0 3 480 1 5 61 5 1 1026 3 0 196 0 2 31 8 28 309 0 4 193 7 16 380 4 5 14 1 0 28 0 1 283 0 4 405 0 1 115 0 1 54 7 17 408 0 4 792 8 7 149 14 0 694 chain 3498 chr3 198295559 + 54478294 54478342 MER44B 551 + 61 113 95264 37 0 4 11 chain 26348 chr3 198295559 + 54478968 54479354 THE1C 375 + 0 375 47204 50 36 20 35 1 2 35 0 4 35 0 1 168 1 0 25 chain 10277 chr3 198295559 + 54686152 54686300 MER58A 224 + 37 186 69852 82 8 9 58 chain 61407 chr3 198295559 + 54693309 54694374 Tigger3b 1229 + 60 1165 26009 21 0 1 4 1 0 5 31 35 48 12 14 53 4 14 21 0 4 48 16 15 35 1 2 186 4 0 12 0 1 21 1 14 6 4 0 46 3 5 39 0 1 9 19 28 17 13 11 30 7 17 39 4 0 7 1 5 88 11 12 73 0 2 73 13 4 39 chain 327706 chr3 198295559 + 54723840 54727905 L1PA7 6471 + 2376 6457 6255 196 0 2 64 2 3 489 3 1 259 0 4 176 0 4 610 6 7 380 5 7 515 2 0 241 0 29 8 29 0 227 14 21 689 10 8 6 0 1 134 chain 507046 chr3 198295559 + 54802615 54808211 L1PA3long 6157 + 548 6153 2887 194 1 0 673 0 5 972 0 4 5 0 1 3751 chain 8434 chr3 198295559 + 54909543 54909703 MER30 238 + 0 177 73835 15 35 47 46 4 9 60 chain 37495 chr3 198295559 + 54996760 54997182 L1PA7 6471 + 6048 6470 36400 422 chain 145579 chr3 198295559 + 55098637 55100244 L1PA4 6152 + 3721 5332 12648 1583 0 4 24 chain 550168 chr3 198295559 + 55136329 55142351 L1PA2 6032 + 0 6032 735 1309 0 8 881 1 0 4 0 1 1605 1 0 1822 0 3 399 chain 525687 chr3 198295559 + 55209131 55215087 L1PA4 6152 + 0 5969 2015 231 0 1 944 0 1 59 1 0 965 0 2 483 2 1 40 0 2 563 0 1 77 0 2 117 0 4 632 1 0 24 0 3 1817 chain 286919 chr3 198295559 + 55260822 55264242 HERVL-int 5654 + 0 3439 7232 56 5 6 187 0 4 1269 6 7 109 0 1 266 0 2 173 0 9 79 0 1 217 0 1 156 1 0 151 10 9 63 0 1 118 0 1 523 1 0 30 chain 9366 chr3 198295559 + 55274083 55274248 L1PB1 5432 + 5282 5427 71774 14 2 0 15 8 0 16 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 4735 chr3 198295559 + 55286344 55286432 MLT1J2 417 + 231 333 87055 26 4 5 35 7 20 16 chain 4178 chr3 198295559 + 55327661 55327835 MLT1H 522 + 97 283 90274 42 112 124 20 chain 46125 chr3 198295559 + 55359065 55359612 MER41A 554 + 0 547 31000 547 chain 3102 chr3 198295559 + 55365670 55365703 Tigger3c 601 + 58 91 98780 33 chain 479667 chr3 198295559 + 55388739 55394192 L1PA4 6152 + 2 5519 3641 97 0 1 27 0 14 1720 0 1 14 0 2 655 0 3 554 0 28 167 4 1 230 1 0 1587 0 15 186 0 4 211 chain 18366 chr3 198295559 + 55399099 55399491 L1PA14 3548 + 3088 3447 58281 21 9 5 17 2 0 6 1 0 52 0 13 19 1 0 44 33 8 24 8 1 33 19 18 30 4 2 12 5 3 19 1 0 32 chain 18046 chr3 198295559 + 55401803 55402082 L1PA8 5853 + 5580 5853 58615 28 2 0 70 20 11 6 0 7 38 2 1 19 1 0 93 chain 47402 chr3 198295559 + 55432351 55433066 L1PA11 4918 + 3868 4564 30506 445 0 4 9 5 1 5 1 0 24 1 2 31 23 20 65 2 0 13 2 1 10 0 1 9 4 0 9 31 22 15 1 0 10 chain 5473 chr3 198295559 + 55465168 55465264 MER20 218 + 97 200 83340 34 24 31 38 chain 39922 chr3 198295559 + 55623380 55623916 LTR10A 586 + 0 565 34720 141 2 0 67 0 29 37 8 9 135 1 4 81 8 6 56 chain 28337 chr3 198295559 + 55744461 55744830 MER51A 677 + 282 661 44359 44 0 7 69 0 11 170 8 0 78 chain 37317 chr3 198295559 + 55749423 55749938 LTR12F 595 + 0 595 36538 47 40 0 44 5 124 149 0 1 230 chain 12470 chr3 198295559 + 55761982 55762158 THE1D 372 + 194 372 66036 12 17 18 91 0 1 56 chain 450823 chr3 198295559 + 55831626 55836801 L1PA4 6152 + 8 5187 4375 109 0 4 455 1 0 132 12 5 616 0 3 5 10 7 90 1 0 1747 0 11 323 2 0 1672 chain 19823 chr3 198295559 + 55841183 55841523 THE1B 368 + 6 348 56650 57 12 10 96 67 71 108 chain 22879 chr3 198295559 + 55906194 55906453 AluY 311 + 0 304 52535 16 0 44 72 0 1 171 chain 118511 chr3 198295559 + 55930370 55931763 L1PA7 6471 + 5076 6469 15806 538 0 2 80 7 8 7 1 0 748 2 0 10 chain 3014 chr3 198295559 + 56056161 56056407 LTR83 644 + 8 261 99704 30 152 157 14 3 0 6 25 30 16 chain 3948 chr3 198295559 + 56064824 56064866 MER58A 224 + 42 84 91779 42 chain 129120 chr3 198295559 + 56211093 56213063 L1PB1 5432 + 3457 5326 14130 82 11 12 169 9 7 143 20 24 68 6 5 89 2 1 284 0 7 146 30 21 31 1 0 162 1 0 303 5 8 79 6 7 9 80 0 20 1 0 8 3 2 12 2 0 3 2 0 9 2 0 51 1 0 12 6 5 39 0 1 5 11 1 12 20 17 15 chain 530911 chr3 198295559 + 56213069 56219144 L1PA4 6152 + 40 6151 1791 760 25 36 267 0 11 734 0 1 1421 0 1 335 0 2 489 0 2 306 0 2 1306 0 1 284 3 5 35 0 1 104 0 2 6 chain 5852 chr3 198295559 + 56242038 56242109 L1PB2 3958 + 3768 3838 81683 7 1 0 63 chain 2878 chr3 198295559 + 56330619 56330712 Tigger4a 237 - 114 207 101020 27 49 49 17 chain 36884 chr3 198295559 + 56353394 56353808 L1PA5 6144 + 5723 6137 36825 414 chain 13131 chr3 198295559 + 56365175 56365463 Tigger3a 397 + 0 342 64879 28 107 161 153 chain 46670 chr3 198295559 + 56378076 56378584 L1PA2 6032 + 5524 6032 30784 508 chain 30312 chr3 198295559 + 56438049 56438539 LOR1a 498 + 0 498 41747 44 0 1 24 0 1 93 76 78 91 12 13 79 0 3 71 chain 3311 chr3 198295559 + 56453200 56453235 MLT1I 406 + 104 139 96913 35 chain 9869 chr3 198295559 + 56454885 56455040 L1MB3 1562 + 1268 1425 70686 26 0 4 54 13 12 57 1 0 4 chain 58027 chr3 198295559 + 56480375 56481029 L1PA4 6152 + 4773 5427 26958 528 1 0 7 0 1 118 chain 40555 chr3 198295559 + 56496288 56496875 LTR22 571 + 0 568 34264 79 1 0 170 0 3 6 10 0 19 0 1 157 48 37 51 0 1 14 10 10 11 2 0 9 chain 14311 chr3 198295559 + 56504942 56505199 L1MA3 4352 + 543 788 63178 16 0 13 46 14 15 16 26 1 106 1 2 14 2 0 16 chain 5121 chr3 198295559 + 56508442 56508518 MER20 218 + 66 144 85054 18 7 9 51 chain 66591 chr3 198295559 + 56521431 56522334 L1PA8 5853 + 4969 5853 24799 37 7 8 14 43 7 165 1 0 161 1 0 38 1 19 146 1 0 45 2 0 70 2 0 15 0 7 39 2 1 19 3 2 25 1 0 54 0 1 11 chain 80235 chr3 198295559 + 56543901 56544799 L1PA3long 6157 + 5258 6157 21580 73 7 8 818 chain 29055 chr3 198295559 + 56587894 56588445 L1PB1 5432 + 4917 5423 43244 93 8 10 83 18 5 6 1 0 24 1 0 9 17 12 9 3 1 51 2 1 15 1 0 45 1 0 15 25 12 19 7 4 15 2 0 26 1 0 19 1 0 13 1 0 14 1 0 5 chain 112731 chr3 198295559 + 56691697 56693023 LTR12C 1709 + 0 1709 16720 262 0 1 226 1 0 161 0 278 184 1 0 5 3 1 106 0 4 118 0 2 92 0 1 12 1 102 154 chain 124144 chr3 198295559 + 56718751 56720218 LTR12C 1709 + 0 1709 14821 263 0 1 36 0 1 251 13 90 114 0 161 195 1 0 4 4 2 106 0 4 159 0 1 321 chain 16859 chr3 198295559 + 56814191 56814413 MER30 238 + 0 238 59964 109 4 20 109 chain 32486 chr3 198295559 + 56913688 56914247 L1PB1 5432 + 4866 5404 39954 193 0 2 5 0 8 25 17 15 24 1 0 9 1 0 9 1 0 3 2 0 10 3 1 49 3 2 16 1 0 42 2 1 16 3 0 11 10 1 19 26 21 22 1 0 21 1 0 13 chain 132268 chr3 198295559 + 56934283 56935831 LTR12C 1709 + 0 1709 13798 281 1 2 408 0 159 262 1 0 5 3 1 106 0 4 481 chain 28019 chr3 198295559 + 56944212 56944564 Tigger1 2417 + 1479 1831 44834 352 chain 543045 chr3 198295559 + 56945132 56951277 L1PA4 6152 + 1 6140 1132 419 13 2 873 0 1 2401 0 1 427 1 0 755 12 12 160 0 1 272 4 5 154 0 1 550 0 1 104 chain 12609 chr3 198295559 + 56996783 56997022 MER30 238 + 0 238 65787 15 15 21 60 16 3 16 15 24 53 3 0 46 chain 4126 chr3 198295559 + 57013695 57013800 LTR12C 1709 + 654 718 90612 17 46 5 42 chain 70767 chr3 198295559 + 57027943 57028705 L1PA2 6032 + 5270 6032 23811 762 chain 30848 chr3 198295559 + 57303801 57304249 LTR7 482 + 0 469 41268 101 20 14 135 0 30 85 1 2 15 6 0 37 12 14 36 chain 289439 chr3 198295559 + 57304264 57307916 HERVH-int 3825 + 0 3825 7145 157 2 1 174 1 0 32 16 16 91 12 242 15 22 1 40 58 0 9 0 1 123 0 1 323 15 0 208 20 11 25 1 0 10 0 1 204 4 31 358 0 1 769 0 1 99 0 2 127 4 7 44 0 4 24 0 7 249 37 38 379 chain 2326 chr3 198295559 + 57304826 57304870 HERVH-int 3825 + 503 604 99716 18 10 67 16 chain 27361 chr3 198295559 + 57316569 57316953 THE1D 372 + 0 372 45748 75 19 0 53 0 4 53 5 8 179 chain 553812 chr3 198295559 + 57324583 57330721 L1PA3long 6157 + 1 6157 496 284 0 1 667 0 2 234 0 3 209 0 9 1226 1 2 624 2 1 440 0 1 2446 0 2 5 chain 108717 chr3 198295559 + 57338025 57339393 SVA_A 1864 + 15 1864 17213 179 7 8 139 32 62 133 0 3 37 14 13 23 4 1 225 38 489 537 chain 89481 chr3 198295559 + 57343183 57344213 LTR5A 1029 + 0 1029 19761 147 1 0 882 chain 60971 chr3 198295559 + 57348947 57350275 L1PB1 5432 + 4436 5422 26114 173 0 4 15 5 0 176 0 9 155 0 3 33 13 15 84 17 15 20 1 0 4 3 2 13 6 2 9 313 0 32 33 21 16 2 1 38 6 5 20 18 7 18 9 6 12 2 0 26 1 0 22 1 0 12 1 0 14 1 0 4 chain 41503 chr3 198295559 + 57353534 57354179 L1PA15 4387 + 3677 4312 33671 136 2 0 17 4 0 30 0 4 26 2 0 27 16 15 78 2 1 73 0 4 16 1 0 26 1 0 19 0 1 34 2 1 17 2 0 14 6 5 35 17 14 42 chain 35194 chr3 198295559 + 57388670 57389063 L1PA5 6144 + 5750 6143 37898 393 chain 17926 chr3 198295559 + 57438417 57438670 L1PA16 3655 + 1727 1984 58723 68 1 0 7 13 17 83 0 1 81 chain 4650 chr3 198295559 + 57451286 57451347 MER53 195 + 1 63 87530 49 1 2 11 chain 37456 chr3 198295559 + 57469240 57469775 L1PA16 3655 + 3008 3534 36434 22 0 1 55 9 0 15 2 11 28 9 1 60 1 0 61 0 1 23 8 6 242 chain 545565 chr3 198295559 + 57476938 57483081 L1PA4 6152 + 0 6151 996 125 19 5 12 11 25 2034 0 2 14 0 1 44 0 1 626 0 1 798 0 2 2345 0 1 115 chain 63497 chr3 198295559 + 57484414 57485314 L1PB2 3958 + 2928 3838 25524 89 7 24 266 2 0 54 1 0 13 5 0 57 19 20 94 1 0 48 0 2 22 1 0 64 6 5 44 0 5 18 2 0 9 1 0 13 1 0 63 chain 5990 chr3 198295559 + 57493676 57493748 HY1 111 + 10 82 81121 72 chain 7957 chr3 198295559 + 57512449 57512555 U6 107 + 0 107 74984 75 4 5 27 chain 50476 chr3 198295559 + 57512555 57513478 L1PA8A 6298 + 5673 6291 29385 291 305 0 327 chain 2785 chr3 198295559 + 57545994 57546037 LTR25 836 + 501 557 101726 29 1 14 13 chain 489367 chr3 198295559 + 57606795 57612400 L1PA5 6144 + 3 6143 3436 86 0 525 334 8 12 72 0 1 173 0 1 200 3 8 16 0 2 15 0 1 86 5 0 1152 0 3 474 2 1 5 1 0 75 0 4 1577 0 3 450 8 7 387 8 2 468 chain 131821 chr3 198295559 + 57648000 57650280 L1PB1 5432 + 3451 5422 13843 90 7 10 143 0 8 21 5 9 195 23 7 363 1 0 4 0 1 83 19 18 42 1 2 27 4 13 82 3 2 25 10 14 16 3 0 79 1 3 283 9 6 91 314 27 23 1 0 8 1 0 14 14 8 19 0 4 29 2 1 15 1 0 44 1 0 15 4 0 7 15 6 7 1 0 11 3 1 5 1 0 9 8 6 23 1 0 22 1 0 12 1 0 18 chain 37244 chr3 198295559 + 57686434 57687021 Tigger1 2417 + 1 597 36590 9 15 0 17 15 32 63 0 2 180 3 6 87 27 26 73 9 8 59 0 4 30 chain 3398 chr3 198295559 + 57699661 57699698 HY3 101 + 0 37 96083 37 chain 18902 chr3 198295559 + 57707551 57707819 L1MA3 4352 + 3819 4093 57635 58 5 7 107 1 3 61 0 2 26 1 0 4 0 1 5 chain 3077 chr3 198295559 + 57720592 57720690 MER68 562 + 176 244 99001 22 36 10 15 6 2 19 chain 25079 chr3 198295559 + 57723218 57723511 AluSp 311 + 5 301 49152 86 0 3 207 chain 135516 chr3 198295559 + 57746985 57748777 SVA_F 1814 + 335 1813 13488 548 325 0 64 0 15 39 2 0 176 1 0 10 1 0 626 chain 14839 chr3 198295559 + 57747538 57747779 SVA_F 1814 + 887 1094 39301 27 49 0 34 3 18 128 chain 2169 chr3 198295559 + 57747587 57747614 SVA_F 1814 + 937 978 59581 6 1 0 4 0 15 16 chain 2165 chr3 198295559 + 57747834 57747858 SVA_F 1814 + 1098 1122 75024 24 chain 4146 chr3 198295559 + 57773316 57773504 MER6C 202 - 26 202 90478 18 112 103 36 3 0 19 chain 13506 chr3 198295559 + 58005036 58005233 Tigger3 1187 + 713 906 64309 19 3 0 9 7 0 3 0 6 48 1 0 101 0 1 6 chain 15853 chr3 198295559 + 58134159 58134397 MER1B 344 + 95 344 61224 125 4 0 33 28 43 48 chain 40501 chr3 198295559 + 58201358 58201974 LTR10E 629 + 0 629 34307 15 3 1 144 17 14 49 22 0 8 0 18 21 1 27 79 0 1 34 3 1 145 32 30 36 1 0 6 chain 59051 chr3 198295559 + 58228169 58229062 L1PB1 5432 + 4579 5427 26650 47 2 0 76 3 5 90 2 1 305 0 3 5 24 11 12 1 0 8 3 2 14 5 1 9 2 0 52 2 1 15 1 0 45 1 0 15 1 0 2 10 0 25 4 0 9 1 0 14 2 0 23 6 5 18 2 1 11 1 0 18 2 0 5 chain 5684 chr3 198295559 + 58241063 58241162 MER20 218 + 65 177 82414 15 9 20 54 4 6 17 chain 38114 chr3 198295559 + 58273415 58273890 L1PA8 5853 + 5384 5853 35979 225 2 0 69 2 1 9 1 0 56 1 0 16 1 0 93 chain 23238 chr3 198295559 + 58340454 58340738 AluSp 311 + 10 295 52023 186 0 1 98 chain 28596 chr3 198295559 + 58450356 58450742 LTR7B 505 + 0 491 43958 108 0 10 33 4 101 28 0 1 8 1 0 76 1 0 76 14 13 37 chain 3685 chr3 198295559 + 58540326 58540369 MER51D 577 + 534 577 93710 43 chain 22604 chr3 198295559 + 58541326 58541610 LTR8 732 + 0 285 52980 164 0 1 120 chain 3262 chr3 198295559 + 58560718 58560754 MLT1A 405 + 334 370 97362 36 chain 25188 chr3 198295559 + 58562025 58562408 LTR7 482 + 0 472 48967 70 0 7 10 0 50 87 40 71 70 1 2 105 chain 28829 chr3 198295559 + 58584609 58585023 MER51B 395 + 0 395 43583 34 31 13 193 1 0 10 0 1 5 2 1 138 chain 32212 chr3 198295559 + 58595268 58595679 LTR7B 505 + 0 441 40175 141 0 1 66 20 49 184 chain 23956 chr3 198295559 + 58644246 58644594 THE1B 368 + 0 367 50856 40 0 15 119 3 9 59 1 0 57 24 23 45 chain 13965 chr3 198295559 + 58692694 58692888 LTR8 732 + 0 204 63634 19 0 1 12 9 18 154 chain 40622 chr3 198295559 + 58696728 58697273 MER41A 554 + 0 554 34203 184 23 33 103 8 7 227 chain 35403 chr3 198295559 + 58704249 58704677 LTR10C 591 + 0 438 37772 28 10 18 212 0 1 70 0 1 108 chain 2989 chr3 198295559 + 58707201 58707234 MER20 218 + 184 217 99967 33 chain 63197 chr3 198295559 + 58708876 58709681 LTR12D 1347 + 405 1347 25580 130 0 31 127 1 18 17 0 1 133 0 1 122 0 97 250 10 0 15 chain 48288 chr3 198295559 + 58724279 58724839 LTR14 556 + 0 556 30186 531 4 0 25 chain 40229 chr3 198295559 + 58770920 58771410 L1PA7 6471 + 5979 6470 34500 227 8 9 255 chain 26349 chr3 198295559 + 58787210 58787495 L1PA2 6032 + 5740 6025 47200 285 chain 49720 chr3 198295559 + 58787545 58788154 L1PA7 6471 + 5864 6469 29676 134 0 4 407 7 1 48 2 0 11 chain 551131 chr3 198295559 + 58806585 58812715 L1PA3long 6157 + 6 6157 665 562 0 4 543 0 3 1454 0 13 2777 0 1 794 chain 124901 chr3 198295559 + 58814315 58815669 L1PA3long 6157 + 3953 5307 14725 1354 chain 55829 chr3 198295559 + 58815670 58816278 L1PA3long 6157 + 5307 5915 27620 608 chain 555000 chr3 198295559 + 58816278 58822304 L1PA2 6032 + 1 6028 411 352 0 1 5674 chain 22166 chr3 198295559 + 58822351 58822599 L1PA2 6032 + 5783 6031 53614 248 chain 12077 chr3 198295559 + 58828462 58828703 L1PA16 3655 + 3404 3619 66707 134 79 58 7 5 0 16 chain 557356 chr3 198295559 + 58842154 58848179 L1PA2 6032 + 3 6031 282 425 0 1 201 0 1 1508 0 2 3115 1 0 775 chain 336388 chr3 198295559 + 58852277 58855987 L1PA3long 6157 + 2431 6149 6124 269 0 5 478 0 1 2513 0 2 450 chain 554894 chr3 198295559 + 58930787 58936933 L1PA3long 6157 + 6 6157 420 298 2 1 857 0 1 1048 0 2 818 0 1 1852 0 1 1124 1 2 146 chain 164706 chr3 198295559 + 58942283 58944327 L1P3 4156 + 7 2054 11434 244 1 0 69 1 0 639 1 5 254 3 4 336 0 1 243 0 1 4 1 0 105 1 0 142 chain 116851 chr3 198295559 + 58949632 58950956 L1PA4 6152 + 3853 5186 16076 112 3 0 453 0 1 10 0 10 719 0 1 27 chain 231687 chr3 198295559 + 58980264 58982862 L1PA4 6152 + 3547 6146 8701 2011 4 1 179 0 5 155 2 1 247 chain 8008 chr3 198295559 + 59016101 59016236 L1MA5 2750 + 2512 2646 74865 37 0 4 9 5 0 48 6 7 13 3 2 14 chain 529681 chr3 198295559 + 59031899 59038282 L1PA7 6471 + 0 6461 1840 654 0 1 520 3 4 109 0 1 71 0 1 163 1 0 264 0 1 376 1 6 318 1 0 4 0 2 136 0 1 210 0 1 257 0 2 587 6 3 316 1 0 38 0 46 112 9 12 201 0 2 159 1 4 347 0 13 301 0 1 630 17 22 456 5 0 109 chain 3446 chr3 198295559 + 59043553 59043801 Helitron3Na_Mam 445 + 169 417 95693 4 1 0 17 155 160 26 22 18 23 chain 117601 chr3 198295559 + 59050675 59052063 LTR12C 1709 + 0 1709 15957 362 0 1 337 0 320 91 1 0 6 2 0 107 0 4 71 7 6 404 chain 3582 chr3 198295559 + 59069127 59069169 Tigger3b 1229 + 47 89 94571 42 chain 8565 chr3 198295559 + 59071651 59071752 THE1A 353 + 222 323 73529 101 chain 38354 chr3 198295559 + 59105618 59106080 MER41A 554 + 0 467 35810 408 0 4 18 0 1 36 chain 29213 chr3 198295559 + 59139506 59139819 AluYa5 310 + 0 310 43027 132 3 0 178 chain 11544 chr3 198295559 + 59170384 59170532 THE1D 372 + 221 372 67674 70 0 2 22 1 2 55 chain 8148 chr3 198295559 + 59172972 59173105 MER11A 1151 + 0 1151 74525 77 8 17 13 1 1010 34 chain 3206 chr3 198295559 + 59209477 59209513 MIRb 242 + 79 115 97848 36 chain 11854 chr3 198295559 + 59297823 59297987 THE1A-int 1579 + 17 184 67106 15 1 0 5 0 1 69 0 3 59 2 1 5 0 1 8 chain 17092 chr3 198295559 + 59340866 59341136 MER2 342 + 71 332 59704 8 3 0 35 10 9 12 0 1 156 12 7 16 1 0 17 chain 9749 chr3 198295559 + 59374074 59374195 MER85 139 + 9 139 70935 11 1 0 70 0 10 39 chain 454960 chr3 198295559 + 59395156 59400281 L1PA4 6152 + 1 5133 4261 475 0 2 16 4 7 1445 1 0 748 0 5 510 1 0 1246 0 1 264 10 8 405 chain 52386 chr3 198295559 + 59415568 59416188 L1PA6 6164 + 5538 6162 28760 476 1 5 143 chain 29934 chr3 198295559 + 59465076 59465618 MER51C 639 + 2 611 42113 8 21 0 35 1 0 4 6 79 78 10 11 19 22 23 34 7 9 84 35 46 120 3 4 55 chain 8224 chr3 198295559 + 59465661 59465769 MER30B 195 + 83 195 74345 11 0 1 51 1 4 45 chain 84934 chr3 198295559 + 59493059 59494003 L1PA4 6152 + 3405 4351 20634 47 0 2 897 chain 16848 chr3 198295559 + 59494003 59494195 L1PA4 6152 + 4355 4547 59976 192 chain 60832 chr3 198295559 + 59511375 59512156 LTR12 884 + 0 869 26151 25 9 8 143 5 96 106 2 0 491 chain 10406 chr3 198295559 + 59525899 59526071 Tigger4a 237 + 37 224 69602 29 25 26 11 0 7 65 0 7 42 chain 528960 chr3 198295559 + 59613855 59619952 L1PA5 6144 + 3 6132 1882 121 14 0 11 6 20 394 0 4 414 0 1 1149 2 0 94 0 26 292 3 0 687 1 2 1453 0 6 620 0 4 680 15 9 6 0 1 135 chain 227172 chr3 198295559 + 59627282 59629843 L1PA5 6144 + 3570 6138 8838 1723 0 5 573 0 1 129 0 1 136 chain 57120 chr3 198295559 + 59729228 59729987 MER4E1 777 + 0 769 27224 38 3 0 326 0 1 14 0 4 24 2 14 117 24 20 44 1 0 162 0 1 4 chain 6097 chr3 198295559 + 59756869 59756988 MER104 178 + 14 135 80745 42 26 27 21 1 2 29 chain 34161 chr3 198295559 + 59815274 59815875 L1PB1 5432 + 4860 5420 38588 142 2 1 100 1 2 9 5 0 24 1 0 8 5 0 11 6 2 8 2 0 52 1 0 17 1 0 45 1 0 15 25 12 18 4 2 4 1 0 11 13 11 16 1 0 22 1 0 12 5 4 12 chain 59122 chr3 198295559 + 59823413 59824184 L1PB1 5432 + 3027 3808 26627 29 0 1 148 0 1 382 0 1 36 1 2 88 6 10 35 0 1 10 3 4 33 chain 27551 chr3 198295559 + 59864159 59864513 THE1A 353 + 0 353 45511 109 8 7 237 chain 21964 chr3 198295559 + 59915991 59916470 MLT2A1 477 + 7 383 53891 155 11 8 5 0 2 16 30 33 58 55 0 6 43 0 20 0 1 36 5 0 15 12 9 12 chain 5108 chr3 198295559 + 59926716 59926776 L1MB7 1623 + 1116 1176 85118 60 chain 2888 chr3 198295559 + 60077376 60077447 L1MC4 1079 + 27 85 100941 31 28 15 12 chain 18215 chr3 198295559 + 60128172 60128541 THE1C 375 + 0 375 58445 64 129 134 150 0 1 26 chain 11503 chr3 198295559 + 60154118 60154251 MER85 139 + 0 133 67741 133 chain 15243 chr3 198295559 + 60190594 60190774 L1PA3long 6157 + 5972 6157 61989 7 0 4 24 4 5 145 chain 63233 chr3 198295559 + 60193972 60194883 L1PB3 3668 + 2227 3141 25575 17 4 8 14 10 4 44 2 6 35 2 0 16 0 1 27 3 7 262 1 0 145 0 1 92 0 4 78 2 0 10 5 0 84 3 4 55 chain 31073 chr3 198295559 + 60209665 60210046 L1PA8A 6298 + 5911 6291 41070 272 12 11 97 chain 19256 chr3 198295559 + 60233645 60233953 THE1B 368 + 0 303 57287 169 2 1 9 30 21 14 0 4 12 1 0 8 4 6 59 chain 31328 chr3 198295559 + 60260618 60261129 MER41B 635 + 0 551 40865 110 0 1 14 20 31 19 5 0 192 5 0 31 8 8 44 40 78 23 chain 3124 chr3 198295559 + 60357952 60357987 MER5A 189 + 29 64 98586 35 chain 1035 chr3 198295559 + 60442856 60443101 L1PA4 6152 + 4148 4393 25449 245 chain 82078 chr3 198295559 + 60443903 60444846 L1PA4 6152 + 5201 6143 21228 183 1 0 434 1 0 186 1 2 137 chain 4762 chr3 198295559 + 60456834 60457961 L1PA4 6152 + 4393 5519 25449 908 1 0 218 chain 367517 chr3 198295559 + 60481111 60485761 L1PA8A 6298 + 1610 6290 5703 895 1 2 251 6 10 39 10 0 88 0 1 73 0 4 195 7 6 107 5 6 84 18 14 11 1 0 3 1 0 9 0 2 8 5 9 48 1 0 394 17 19 382 0 1 327 0 1 80 0 6 98 0 3 73 4 3 391 0 14 222 0 3 260 6 5 36 0 1 282 0 1 106 0 1 106 chain 3710 chr3 198295559 + 60500143 60500302 MER58A 224 + 42 217 93541 7 7 0 33 92 115 20 chain 29506 chr3 198295559 + 60534145 60534463 AluYb8 318 + 0 312 42599 126 6 0 186 chain 136547 chr3 198295559 + 60538131 60539686 L1PA5 6144 + 4323 5879 13385 22 0 1 282 1 0 783 1 0 353 1 0 18 1 4 93 chain 137837 chr3 198295559 + 60566259 60567800 L1PA4 6152 + 3789 5334 13276 1086 5 9 450 chain 24786 chr3 198295559 + 60587090 60587482 L1PA8 5853 + 5432 5817 49608 87 1 2 43 1 0 44 2 0 70 14 12 45 7 6 19 1 0 33 10 9 15 chain 11227 chr3 198295559 + 60611370 60611503 MER85 139 + 6 139 68207 133 chain 65054 chr3 198295559 + 60694331 60695074 L1PA5 6144 + 5401 6142 25177 594 0 2 138 4 0 7 chain 9511 chr3 198295559 + 60699596 60699698 L1HS 6032 + 5926 6028 71446 102 chain 21882 chr3 198295559 + 60706095 60706403 L1PA8 5853 + 5546 5853 53998 18 1 0 39 8 6 73 1 0 11 2 0 31 0 7 9 2 1 19 2 1 92 chain 486163 chr3 198295559 + 60710285 60715781 L1PA3long 6157 + 2 6157 3511 902 0 1 143 1 0 459 6 8 370 4 0 80 0 1 1474 6 1 1595 5 671 111 1 0 339 chain 274523 chr3 198295559 + 60776269 60780751 MER61-int 3695 + 1 3695 7590 27 23 20 5 2 0 66 3 5 74 39 0 64 1 0 10 1 0 138 1 2 112 0 1 12 7 6 96 2 0 67 9 3 96 756 0 146 2 0 277 1 6 8 1 0 115 0 3 259 1 6 30 1 0 467 7 10 254 0 1 222 2 0 4 2 0 155 1 0 99 28 25 144 0 1 108 0 1 4 3 1 203 2 1 75 8 9 134 0 15 55 0 6 8 21 14 24 chain 37017 chr3 198295559 + 60888922 60889453 LTR10F 562 + 0 562 36723 135 8 9 28 0 28 29 0 24 13 21 0 12 3 0 226 0 1 17 5 6 34 chain 4282 chr3 198295559 + 60893353 60893404 MER34 540 + 419 470 89612 51 chain 534411 chr3 198295559 + 60923573 60931364 L1PA4 6152 + 1 6141 1645 848 15 15 372 1 0 532 1 0 466 0 3 84 0 1 29 0 1 746 0 2 276 1661 0 140 0 1 364 0 1 50 0 3 811 2 0 178 1 0 352 0 1 17 0 1 359 0 1 486 chain 110257 chr3 198295559 + 60926958 60928326 SVA_B 1603 + 6 1603 17043 14 17 0 11 6 0 7 14 6 22 0 5 285 0 15 300 0 3 62 0 117 35 3 5 12 0 1 2 0 119 570 2 0 6 chain 4933 chr3 198295559 + 60950079 60950145 Tigger3c 601 + 343 419 85984 23 0 10 43 chain 44107 chr3 198295559 + 60987209 60987706 MER9a1 513 + 0 513 32077 127 0 1 153 0 15 217 chain 252111 chr3 198295559 + 61020511 61024015 L1P2 5180 + 1985 5160 8178 26 9 7 216 13 0 85 0 1 255 0 4 193 316 0 563 5 6 15 0 1 208 0 1 42 4 0 74 0 3 418 0 2 519 0 2 81 0 10 8 17 0 364 1 0 47 1 0 24 chain 10308 chr3 198295559 + 61026586 61026754 MER30 238 + 40 231 69790 60 2 0 8 4 0 9 1 21 10 5 11 37 0 3 32 chain 30395 chr3 198295559 + 61039459 61039854 L1PA7 6471 + 6066 6463 41680 239 27 28 50 1 2 78 chain 462866 chr3 198295559 + 61042988 61048504 L1PA5 6144 + 0 5510 4055 120 0 14 42 0 1 167 21 0 177 4 0 628 0 3 17 9 0 458 0 1 679 7 0 64 0 1 1147 1 0 157 1 0 424 0 12 634 0 6 111 0 1 394 7 6 30 1 0 216 chain 16988 chr3 198295559 + 61097112 61097313 L1P1 4361 + 4 205 59820 201 chain 233557 chr3 198295559 + 61120653 61123509 L1PA7 6471 + 1362 6468 8648 307 0 1 178 1 2 179 0 1 130 0 5 172 3 0 181 24 35 87 0 1 119 8 2237 619 1 4 90 2 1 306 2 1 8 0 2 15 0 1 424 chain 277837 chr3 198295559 + 61187325 61190461 L1PA4 6152 + 2381 5521 7495 2923 0 4 213 chain 546687 chr3 198295559 + 61211021 61217154 L1PA3long 6157 + 6 6157 930 976 0 4 53 0 1 786 4 1 2371 3 0 202 0 17 567 0 2 1171 chain 44297 chr3 198295559 + 61245826 61246372 MER41A 554 + 0 546 31953 546 chain 20189 chr3 198295559 + 61246567 61246861 L1PA8 5853 + 5565 5853 56150 45 3 1 71 1 0 5 11 9 44 2 1 19 4 3 41 0 1 48 chain 3672 chr3 198295559 + 61319902 61319946 MADE1 96 + 50 94 93796 44 chain 248967 chr3 198295559 + 61364035 61367176 L1P2 5180 + 2 5178 8269 110 0 3 5 3 0 18 51 63 46 1 0 261 1 0 7 1 0 272 1 0 5 1 0 141 1 26 46 9 1719 451 1 2 131 0 1 206 4 0 193 20 25 321 0 1 270 1 0 30 9 302 433 2 1 44 1 0 39 1 0 4 chain 75016 chr3 198295559 + 61383549 61384425 L1PA6 6164 + 5244 6153 22838 69 1 5 227 0 29 579 chain 158798 chr3 198295559 + 61391109 61392942 L1P1 4361 + 1 1835 11819 1236 0 1 597 chain 370527 chr3 198295559 + 61395099 61399232 L1PA4 6152 + 1832 5968 5644 484 1 0 727 0 1 4 1 0 161 1 0 731 0 1 1093 1 0 266 0 5 663 chain 19362 chr3 198295559 + 61405990 61406258 THE1A 353 + 94 353 57170 69 2 1 76 13 5 108 chain 22302 chr3 198295559 + 61673856 61674190 L1PA7 6471 + 6127 6466 53403 73 0 4 21 9 13 59 12 13 7 2 0 4 0 1 125 10 7 12 chain 12337 chr3 198295559 + 61710506 61710724 MER30 238 + 0 230 66241 16 0 18 12 17 0 53 9 0 12 2 27 51 6 1 40 chain 21084 chr3 198295559 + 61712403 61712765 THE1D 372 + 0 372 55025 45 19 20 95 25 34 4 1 0 82 9 11 46 4 3 32 chain 37387 chr3 198295559 + 61775671 61776087 L1PA4 6152 + 5735 6151 36485 416 chain 24083 chr3 198295559 + 62059666 62060026 THE1C 375 + 0 360 50674 77 46 43 83 0 3 123 0 1 20 1 0 10 chain 3439 chr3 198295559 + 62083222 62083262 MADE1 96 + 3 43 95740 40 chain 4653 chr3 198295559 + 62136484 62136534 HSMAR1 1287 + 671 721 87519 50 chain 23904 chr3 198295559 + 62136561 62136904 THE1B 368 + 0 368 50936 22 0 1 17 0 15 113 1 0 26 4 1 6 0 1 12 17 29 125 chain 3919 chr3 198295559 + 62286030 62286118 Charlie1b 519 + 378 475 91979 45 26 35 17 chain 151203 chr3 198295559 + 62305187 62307036 L1PA8 5853 + 3976 5853 12275 24 0 11 204 8 6 407 0 1 83 0 6 266 1 0 22 0 3 73 0 13 111 0 2 174 1 3 177 1 0 46 2 0 71 1 0 10 1 0 51 2 1 21 1 0 91 chain 21851 chr3 198295559 + 62339297 62339660 THE1C 375 + 7 375 54037 131 11 15 26 0 2 5 31 29 31 7 8 22 1 2 71 1 0 26 chain 22910 chr3 198295559 + 62343516 62343890 MSTA 426 + 0 416 52497 97 27 51 58 4 0 6 26 28 56 1 21 99 chain 4023 chr3 198295559 + 62344690 62344739 U3 216 + 14 63 91288 49 chain 25407 chr3 198295559 + 62443462 62443832 THE1C 375 + 2 375 48614 167 2 3 9 34 36 158 chain 34919 chr3 198295559 + 62457673 62458091 L1PA7 6471 + 6048 6468 38078 180 5 9 222 2 0 9 chain 4324 chr3 198295559 + 62575425 62575518 MIR 256 + 113 212 89323 35 3 0 12 3 7 15 9 14 16 chain 44083 chr3 198295559 + 62580093 62580587 L1PA3long 6157 + 5654 6149 32093 409 0 1 85 chain 29140 chr3 198295559 + 62595687 62596088 MLT2A1 477 + 0 397 43132 142 26 31 55 3 0 157 6 0 12 chain 3959 chr3 198295559 + 62665762 62665810 MIRb 242 + 58 104 91697 9 2 0 37 chain 4389 chr3 198295559 + 62685568 62685620 L1MA5A 2387 + 2243 2295 88948 52 chain 3067 chr3 198295559 + 62728126 62728192 MADE1 96 - 0 87 99112 30 7 28 29 chain 92939 chr3 198295559 + 62741186 62742643 L1PREC2 3366 + 1632 3048 19187 176 1 2 504 35 34 39 1 0 25 27 28 43 1 0 33 0 1 235 3 1 18 4 3 32 1 0 43 1 0 5 3 0 13 76 61 18 8 6 11 22 8 35 6 4 38 chain 5871 chr3 198295559 + 62762684 62762756 MER2 342 + 217 289 81591 72 chain 5523 chr3 198295559 + 62814396 62814479 U6 107 + 11 95 83140 28 1 0 39 1 3 14 chain 48099 chr3 198295559 + 62908360 62908945 L1PA6 6164 + 5582 6162 30260 422 1 0 12 3 1 137 2 0 8 chain 29925 chr3 198295559 + 62922079 62922458 MLT2A2 560 + 0 379 42118 179 1 0 174 0 1 25 chain 118372 chr3 198295559 + 62950595 62952165 THE1B-int 1605 + 1 1605 15822 24 9 11 122 0 3 117 0 5 149 11 38 49 1 0 128 1 0 32 21 22 325 0 1 45 4 0 444 16 17 72 chain 559638 chr3 198295559 + 63136268 63142301 L1PA2 6032 + 0 6032 183 2191 1 0 3841 chain 255903 chr3 198295559 + 63153078 63155842 L1PA2 6032 + 3268 6032 8093 2764 chain 32251 chr3 198295559 + 63156713 63157191 L1PA8 5853 + 5381 5853 40146 183 1 0 44 2 0 8 1 3 59 30 27 35 2 1 21 1 0 91 chain 125702 chr3 198295559 + 63183705 63185216 L1PA7 6471 + 4944 6452 14598 5 1 0 164 0 1 489 13 11 694 11 10 134 chain 3941 chr3 198295559 + 63229822 63229870 MADE1 96 + 47 95 91822 48 chain 9785 chr3 198295559 + 63249486 63249690 L1PB1 5432 + 5240 5424 70855 40 1 0 14 25 14 18 8 6 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 68868 chr3 198295559 + 63253555 63254327 L1PA4 6152 + 5379 6152 24242 519 1 0 246 0 2 6 chain 521750 chr3 198295559 + 63255617 63261711 L1PA3long 6157 + 4 6142 2197 157 10 38 375 0 1 124 1 8 760 1 0 88 0 2 801 2 0 825 1 0 339 0 1 165 2 1 668 0 4 520 0 1 60 1 0 369 0 5 9 13 14 803 chain 24990 chr3 198295559 + 63261745 63262029 L1PA4 6152 + 5859 6143 49298 284 chain 63869 chr3 198295559 + 63374977 63375721 L1PA6 6164 + 5410 6156 25440 92 0 1 500 8 9 144 chain 57134 chr3 198295559 + 63380607 63381264 L1P1 4361 + 3687 4341 27216 461 1 0 157 1 0 23 2 1 12 chain 3986 chr3 198295559 + 63495739 63495882 L1MC1 2226 + 2010 2128 91545 34 61 39 20 7 5 13 1 0 7 chain 12377 chr3 198295559 + 63501922 63502186 MER33 330 + 45 295 66187 80 1 0 4 11 12 14 1 0 15 14 13 18 14 15 66 2 0 6 11 0 7 chain 6595 chr3 198295559 + 63545439 63545520 5S 121 + 0 90 78984 29 0 9 52 chain 226652 chr3 198295559 + 63589476 63591932 L1PA2 6032 + 3537 6030 8849 210 0 1 1663 0 1 475 1 0 75 0 36 32 chain 24281 chr3 198295559 + 63637263 63637621 THE1D 372 + 0 369 50367 107 0 1 60 0 4 6 15 16 26 17 23 97 1 0 29 chain 489383 chr3 198295559 + 63645170 63650697 L1PA4 6152 + 0 5515 3433 327 1 4 118 19 13 114 1 0 684 20 0 712 0 1 230 1 0 961 0 2 11 0 1 74 0 9 2254 chain 3776 chr3 198295559 + 63675626 63675668 MLT1A0 366 + 252 294 93019 42 chain 522406 chr3 198295559 + 63693931 63700381 L1PA6 6164 + 0 6162 2162 63 1 2 402 1 0 792 312 0 418 0 1 19 1 2 228 0 1 287 1 0 975 0 2 359 4 6 146 1 0 395 0 1 247 0 8 8 0 4 28 0 1 20 1 6 593 0 1 794 3 0 342 0 2 9 chain 141922 chr3 198295559 + 63720979 63722824 L1PA11 4918 + 2673 4507 12945 202 0 1 108 3 0 219 13 7 456 6 9 574 1 0 4 1 2 75 12 8 55 2 1 13 2 0 67 13 14 19 chain 29872 chr3 198295559 + 63730793 63731334 L1PB 1623 + 1066 1572 42161 240 9 6 134 1 0 6 3 2 15 114 84 19 chain 542187 chr3 198295559 + 63733312 63739342 L1PA3long 6157 + 0 6157 1197 152 0 1 211 0 1 405 0 108 8 0 20 1938 0 1 2161 0 1 1141 5 0 9 chain 64565 chr3 198295559 + 63744870 63745624 L1PA7 6471 + 5714 6469 25298 445 0 1 309 chain 3622 chr3 198295559 + 63762791 63762832 L1MC1 2226 + 2006 2047 94256 41 chain 3361 chr3 198295559 + 63884085 63884123 L1MC3 1789 + 1091 1129 96474 38 chain 11384 chr3 198295559 + 63989455 63989710 MER2 342 + 0 266 67941 26 61 64 14 9 5 13 2 0 20 0 13 28 6 7 76 chain 4955 chr3 198295559 + 64103181 64103270 MER20 218 + 52 143 85867 24 18 20 47 chain 4547 chr3 198295559 + 64108031 64108192 MER58A 224 + 26 201 88077 37 91 105 33 chain 237434 chr3 198295559 + 64114606 64118025 L1PA13 3608 + 135 3522 8538 4 1 0 25 2 1 12 3 0 29 25 12 71 2 0 73 61 83 9 1 0 7 6 2 17 2 1 12 1 0 7 2 1 15 2 0 18 4 3 94 2 0 354 0 2 322 6 8 85 0 1 342 1 0 158 1 0 36 1 0 45 0 4 428 7 0 6 0 6 37 6 7 4 1 0 64 22 19 236 0 1 106 1 0 15 0 1 4 1 0 210 1 0 28 1 0 73 0 1 5 1 0 31 7 5 60 1 0 51 1 0 10 2 0 27 1 0 21 8 4 18 1 0 15 1 4 12 18 7 14 1 0 4 chain 5177 chr3 198295559 + 64182090 64182153 MSTD 398 + 19 83 84782 8 0 1 55 chain 3637 chr3 198295559 + 64430059 64430137 MADE1 96 + 0 93 94123 20 9 25 25 5 4 19 chain 9391 chr3 198295559 + 64430274 64430407 L1PA8 5853 + 5722 5853 71723 18 2 1 19 2 1 92 chain 3598 chr3 198295559 + 64451552 64451592 MER5B 177 + 55 95 94441 40 chain 528217 chr3 198295559 + 64475801 64481782 L1PA4 6152 + 8 5975 1904 452 6 0 120 1 0 234 21 9 467 0 1 1499 0 1 381 5 6 1073 0 1 368 0 1 1354 chain 3643 chr3 198295559 + 64531721 64531762 MER53 195 + 147 188 94076 41 chain 275593 chr3 198295559 + 64542607 64545767 L1PA5 6144 + 2972 6143 7565 600 1 0 777 0 4 385 0 1 554 1 5 88 0 3 593 7 6 8 0 1 146 chain 44590 chr3 198295559 + 64731896 64732415 L1PA7 6471 + 5948 6470 31792 146 0 2 235 0 1 138 chain 509937 chr3 198295559 + 64776493 64783285 L1PA7 6471 + 3 6470 2773 374 3 4 104 0 1 176 37 37 302 0 1 4 1 0 57 1 0 161 0 1 679 0 3 150 0 1 567 42 17 468 55 8 183 1 0 202 1 0 487 0 1 160 6 7 56 0 1 20 0 1 166 0 2 160 17 15 90 1 9 65 0 1 159 0 1 45 1 0 157 9 27 169 342 45 274 1 0 77 0 2 364 13 19 324 29 29 20 0 2 12 chain 158979 chr3 198295559 + 64819073 64820812 L1PA3long 6157 + 4418 6157 11810 1739 chain 13717 chr3 198295559 + 64912333 64912695 THE1B 368 + 0 368 63995 73 23 22 12 48 46 16 61 71 27 1 0 28 17 17 56 chain 346334 chr3 198295559 + 64978922 64982741 L1PA3long 6157 + 2330 6152 5961 564 0 1 396 0 1 1864 0 1 995 chain 3071 chr3 198295559 + 64987170 64987204 LTR8 732 + 582 616 99078 34 chain 17317 chr3 198295559 + 65028595 65028970 THE1B 368 + 2 356 59437 109 0 3 6 49 15 23 37 35 7 0 5 4 1 0 4 0 1 11 17 25 56 7 6 44 chain 469669 chr3 198295559 + 65054359 65059874 L1PA6 6164 + 629 6159 3865 82 0 5 448 0 1 209 0 1 74 0 5 865 12 1 7 0 11 469 5 6 360 0 2 951 3 0 1189 1 0 688 0 3 8 3 4 141 chain 76463 chr3 198295559 + 65064785 65065680 L1PA5 6144 + 4976 5874 22448 167 0 1 15 7 8 643 5 6 58 chain 24334 chr3 198295559 + 65075634 65075917 L1PA7 6471 + 5982 6269 50274 154 0 1 75 0 3 54 chain 57100 chr3 198295559 + 65092279 65092963 LTR12_ 688 + 0 688 27229 183 0 1 328 1 0 132 0 4 40 chain 21609 chr3 198295559 + 65102398 65103047 THE1D 372 + 0 358 54341 63 0 1 4 1 0 25 11 12 52 328 37 146 1 0 18 chain 4083 chr3 198295559 + 65103597 65103663 MLT2A1 477 + 411 465 90886 12 12 0 42 chain 528533 chr3 198295559 + 65119906 65126213 L1PA4 6152 + 18 6152 1893 438 16 20 1904 0 1 54 0 4 255 5 0 8 1 6 469 184 0 514 0 2 203 1 2 2140 0 1 67 2 0 46 chain 15117 chr3 198295559 + 65123071 65123240 L1PA4 6152 - 3292 3461 61691 169 chain 18793 chr3 198295559 + 65224926 65225230 THE1B 368 + 0 306 57792 161 21 20 20 8 13 10 7 6 12 2 1 63 chain 4268 chr3 198295559 + 65261333 65261386 L1PA4 6152 + 4973 5026 89714 53 chain 71287 chr3 198295559 + 65261682 65262478 L1PA4 6152 + 5271 6067 23699 796 chain 6350 chr3 198295559 + 65262478 65262549 L1PA4 6152 + 6070 6141 79838 71 chain 170863 chr3 198295559 + 65269475 65271393 L1PA4 6152 + 3914 5837 11059 569 1 3 669 0 2 215 0 1 464 chain 27523 chr3 198295559 + 65301516 65301946 MER41E 591 + 0 429 45557 28 0 3 18 1 2 58 0 3 8 0 1 4 1 0 105 5 6 59 1 3 63 6 5 10 30 20 33 chain 25202 chr3 198295559 + 65454242 65454526 L1PA3long 6157 + 5858 6142 48945 284 chain 557408 chr3 198295559 + 65509292 65515316 L1PA2 6032 + 1 6026 274 316 0 1 5708 chain 229876 chr3 198295559 + 65541093 65543904 L1PA7 6471 + 3630 6461 8751 417 1 2 629 0 2 308 0 15 103 9 11 148 0 1 87 0 1 267 4 0 77 0 2 43 5 7 239 5 5 314 9 0 7 4 12 123 1 0 11 chain 5375 chr3 198295559 + 65561930 65562044 MER44A 345 + 70 174 83819 31 2 0 8 21 14 6 1 0 45 chain 24758 chr3 198295559 + 65565981 65566275 AluSx4 309 + 8 302 49646 294 chain 36789 chr3 198295559 + 65677887 65678333 L1PA7 6471 + 6025 6469 36889 254 1 2 178 3 0 10 chain 2874 chr3 198295559 + 65682610 65682663 L1MD1 2063 + 1354 1394 101041 32 13 0 8 chain 3745 chr3 198295559 + 65692588 65692739 MSTC 436 + 0 189 93290 15 72 74 35 9 45 20 chain 4116 chr3 198295559 + 65696871 65696917 L1PA2 6032 + 3015 3061 90670 46 chain 274126 chr3 198295559 + 65696920 65699890 L1PA2 6032 + 3062 6032 7601 2970 chain 15554 chr3 198295559 + 65749373 65749670 L1PB1 5432 + 5159 5427 61585 10 2 0 51 2 1 15 1 0 44 1 0 16 3 0 6 16 6 19 2 0 6 1 0 15 2 0 22 1 0 14 8 7 13 1 0 14 1 0 4 2 0 5 chain 6783 chr3 198295559 + 65806466 65806546 MER57B1 401 + 178 258 78372 80 chain 17965 chr3 198295559 + 65897375 65897598 L1PA6 6164 + 5912 6136 58689 110 4 5 109 chain 34453 chr3 198295559 + 65930515 65930956 MER41B 635 + 0 446 38396 118 1 4 4 0 1 233 0 1 85 chain 4223 chr3 198295559 + 66048788 66048852 MER58B 340 + 64 128 89985 14 1 2 25 1 0 23 chain 6763 chr3 198295559 + 66075208 66075301 MSTB2 466 + 371 466 78435 32 1 3 60 chain 10797 chr3 198295559 + 66078558 66078738 MER53 195 + 14 195 68866 68 35 36 77 chain 18287 chr3 198295559 + 66166806 66167106 THE1B 368 + 0 306 58377 82 4 1 86 1 0 21 43 53 63 chain 35101 chr3 198295559 + 66202015 66202529 L1PA8 5853 + 5345 5853 37957 42 0 2 102 14 15 58 1 0 46 2 0 68 2 1 9 2 0 7 1 0 45 2 1 19 10 9 84 chain 174782 chr3 198295559 + 66273478 66275410 L1PA3long 6157 + 4220 6157 10850 134 0 4 1632 0 1 166 chain 3149 chr3 198295559 + 66527892 66527928 MLT1E2 623 + 73 109 98373 36 chain 3658 chr3 198295559 + 66612512 66612553 MER3 215 - 0 41 93927 41 chain 26425 chr3 198295559 + 66621120 66621419 AluYk4 311 + 0 298 47091 105 1 0 193 chain 3927 chr3 198295559 + 66650542 66650590 MER3 215 + 89 138 91932 44 0 1 4 chain 112796 chr3 198295559 + 66651388 66652771 LTR12C 1709 + 0 1709 16705 297 0 1 40 9 52 260 0 278 184 1 0 4 4 2 106 0 4 279 0 4 113 2 1 84 chain 18536 chr3 198295559 + 66652804 66653050 AluSg7 307 + 38 285 58063 93 0 1 6 7 4 7 0 3 133 chain 21940 chr3 198295559 + 66673792 66674113 MER1A 529 + 215 527 53919 151 12 0 77 15 18 66 chain 26733 chr3 198295559 + 66731126 66731491 THE1B 368 + 0 368 46637 102 2 1 66 1 0 29 0 3 8 1 5 18 2 1 7 1 0 128 chain 29138 chr3 198295559 + 66801834 66802347 L1PA16 3655 + 3169 3617 43138 36 1 0 85 2 0 109 36 5 47 1 0 22 0 1 42 0 4 50 55 26 7 6 0 14 chain 15230 chr3 198295559 + 66837234 66837415 L1PA7 6471 + 6279 6459 62001 37 1 0 143 chain 538812 chr3 198295559 + 66842801 66848943 L1PA3long 6157 + 2 6157 1408 113 5 6 576 0 7 754 0 1 257 1 0 1816 0 1 879 0 5 967 1 0 773 chain 5922 chr3 198295559 + 66881871 66881945 L1P5 443 + 363 437 81388 74 chain 14345 chr3 198295559 + 66882064 66882418 L1PB1 5432 + 5105 5423 63120 10 7 0 23 28 22 8 2 0 52 23 26 6 5 0 29 1 0 13 2 1 7 2 0 9 7 0 15 3 1 5 1 0 14 7 5 19 1 0 22 1 0 12 1 0 19 chain 450044 chr3 198295559 + 66893353 66900294 L1PA8 5853 + 50 5853 4392 22 2 0 10 1 0 6 64 25 192 0 4 211 0 1 136 8 9 16 0 3 5 3 0 748 0 4 42 1 2 169 0 8 91 0 1 113 0 9 135 7 6 17 0 1 17 0 1 40 7 8 169 1 5 210 0 4 304 0 1 127 0 13 560 11 10 500 2 1 53 0 4 363 1156 0 300 0 9 197 0 1 78 6 5 70 0 1 417 11 12 48 1 0 43 5 3 72 8 6 52 2 1 19 1 0 13 7 8 72 chain 77479 chr3 198295559 + 66897722 66898872 MER11A 1151 + 0 1151 22200 109 1 90 31 88 1 63 0 2 6 1 0 221 0 1 90 1 2 69 1 0 112 10 9 55 5 2 7 35 0 4 0 35 118 0 1 123 chain 368631 chr3 198295559 + 66915666 66919925 L1PA4 6152 + 10 6152 5685 117 0 14 14 0 339 678 0 4 368 0 1539 855 0 1 845 19 0 606 1 0 606 8 9 136 0 5 6 chain 24723 chr3 198295559 + 66956982 66957278 L1PA7 6471 + 6176 6468 49687 285 4 0 7 chain 13595 chr3 198295559 + 66987298 66987453 L1PA7 6471 + 6313 6468 64175 155 chain 5076 chr3 198295559 + 66996527 66996588 MER53 195 - 1 62 85263 61 chain 94279 chr3 198295559 + 67059681 67060760 MER11C 1089 + 0 1079 19002 569 1 0 174 0 1 335 chain 12636 chr3 198295559 + 67128328 67128608 L1PB1 5432 + 5160 5422 65741 8 2 0 42 15 14 12 1 0 44 1 0 16 2 0 6 16 6 18 3 1 5 1 0 14 13 18 6 1 0 21 1 0 13 1 0 18 chain 553698 chr3 198295559 + 67147649 67153797 L1PA3long 6157 + 6 6156 503 3940 0 1 1184 0 1 1024 chain 499630 chr3 198295559 + 67153986 67160429 L1PA7 6471 + 0 6470 3140 208 7 8 28 0 10 156 0 2 82 17 16 51 1 2 92 1 0 4 0 1 49 41 43 162 0 3 5 3 0 67 13 14 198 0 1 341 7 0 92 2 0 261 0 3 125 0 1 136 0 2 260 24 23 13 0 1 171 2 1 9 13 6 917 2 15 174 1 4 25 1 2 493 6 8 225 8 11 430 1 0 332 0 7 8 7 0 85 4 0 40 0 1 288 0 3 755 chain 17603 chr3 198295559 + 67203492 67203781 THE1D 372 + 81 372 59115 72 4 5 20 1 0 4 42 42 45 0 1 72 0 1 29 chain 4240 chr3 198295559 + 67205498 67205552 MER1B 344 + 286 339 89876 43 1 0 10 chain 70968 chr3 198295559 + 67235853 67236642 L1PA4 6152 + 5359 6149 23765 538 0 1 251 chain 110830 chr3 198295559 + 67252965 67254492 THE1D-int 1627 + 37 1625 16962 147 0 16 211 0 18 148 1 0 67 6 9 56 7 16 5 3 0 11 15 34 227 1 0 172 16 17 13 0 1 178 12 13 4 1 0 177 1 0 48 chain 148001 chr3 198295559 + 67254654 67256547 L1PA8 5853 + 3900 5853 12481 11 0 45 7 0 4 223 0 1 814 1 4 61 20 17 65 5 7 112 0 2 290 2 1 44 2 0 20 1 13 38 1 0 9 1 0 6 0 1 45 2 1 19 1 0 93 chain 70294 chr3 198295559 + 67274381 67275159 L1PA3long 6157 + 5379 6157 23928 778 chain 261723 chr3 198295559 + 67279471 67282409 L1PA5 6144 + 3197 6141 7921 732 0 3 726 8 7 247 0 1 369 0 1 8 0 4 88 1 0 142 1 0 616 chain 2944 chr3 198295559 + 67349458 67349494 MIR 256 + 98 134 100460 36 chain 10831 chr3 198295559 + 67349955 67350126 L1PA8A 6298 + 6144 6290 68806 99 31 6 41 chain 555853 chr3 198295559 + 67393038 67399181 L1PA3long 6157 + 6 6157 368 734 0 2 1780 0 2 1833 0 4 1796 chain 322841 chr3 198295559 + 67427517 67431440 L1P2 5180 + 2 3981 6358 39 3 19 83 7 6 98 1 0 260 1 0 8 1 0 73 0 22 27 5 4 146 1 0 5 1 0 141 0 25 988 0 2 744 2 1 71 0 1 315 1 0 563 1 2 50 2 0 286 chain 39051 chr3 198295559 + 67431440 67431889 L1PA6 6164 + 5707 6158 35319 393 0 2 56 chain 276776 chr3 198295559 + 67438040 67441379 L1PA7 6471 + 3117 6470 7529 375 16 5 77 0 5 898 0 4 184 0 4 815 1 0 118 0 4 8 1 0 75 0 1 446 0 1 22 0 1 292 0 7 11 chain 135419 chr3 198295559 + 67443414 67445638 SVA_F 1814 + 335 1814 13497 553 1 0 60 324 15 164 306 0 44 129 0 643 chain 19083 chr3 198295559 + 67444031 67444352 SVA_F 1814 + 966 1188 44594 47 98 0 122 1 0 53 chain 8694 chr3 198295559 + 67444080 67444176 SVA_F 1814 + 1093 1189 59373 96 chain 9565 chr3 198295559 + 67444516 67444622 SVA_F 1814 + 1000 1105 65121 4 2 1 100 chain 2382 chr3 198295559 + 67444784 67444822 SVA_F 1814 + 962 1000 68333 38 chain 3180 chr3 198295559 + 67444873 67444910 SVA_F 1814 + 1177 1213 70487 10 1 0 26 chain 3259 chr3 198295559 + 67444910 67444962 SVA_F 1814 + 1037 1089 68333 52 chain 3107 chr3 198295559 + 67444962 67444995 SVA_F 1814 + 962 995 65434 33 chain 84848 chr3 198295559 + 67542174 67543225 L1P2 5180 + 1836 2903 20650 423 1 9 306 1 5 207 0 4 113 chain 28517 chr3 198295559 + 67591393 67591747 THE1A 353 + 0 353 44093 84 0 1 25 1 0 92 1 0 151 chain 1304 chr3 198295559 + 67655263 67655302 LTR12 884 + 206 245 88819 39 chain 25563 chr3 198295559 + 67655366 67656020 LTR12 884 + 59 741 48382 143 331 358 123 0 1 57 chain 6410 chr3 198295559 + 67665385 67665569 MER58A 224 + 32 224 79637 52 16 15 19 66 75 31 chain 65824 chr3 198295559 + 67750958 67752000 L1PB1 5432 + 4400 5408 24994 228 0 1 17 0 1 157 0 2 5 11 4 222 16 16 50 3 0 10 0 1 20 1 0 13 27 20 10 0 2 41 2 1 11 7 6 43 1 0 15 3 0 11 53 39 24 1 0 21 1 0 13 1 0 4 chain 24565 chr3 198295559 + 67785045 67785400 THE1B 368 + 0 366 49913 15 3 1 24 1 6 249 0 17 8 17 8 38 chain 53670 chr3 198295559 + 67815073 67815645 L1HS 6032 + 1460 2032 28339 572 chain 32181 chr3 198295559 + 67833949 67834380 MLT2A1 477 + 0 477 40207 140 0 1 20 8 12 91 1 2 119 3 43 49 chain 283087 chr3 198295559 + 67834536 67838001 HERVL-int 5654 + 2200 5654 7337 561 5 7 316 0 1 128 1 2 101 0 1 4 1 0 111 1 0 10 7 4 136 8 5 786 1 2 666 0 3 178 13 0 208 0 1 223 chain 32281 chr3 198295559 + 67838001 67838437 MLT2A1 477 + 0 470 40126 140 1 2 27 1 5 211 6 0 17 4 39 29 chain 28925 chr3 198295559 + 67865570 67865876 AluYa5 310 + 4 310 43445 306 chain 49414 chr3 198295559 + 67888103 67888790 LTR12_ 688 + 0 665 29799 17 8 7 58 25 0 166 0 1 64 3 2 132 12 16 202 chain 8678 chr3 198295559 + 67931867 67932041 L1MB3 1562 + 1146 1320 73263 29 32 31 56 3 0 5 5 9 44 chain 3002 chr3 198295559 + 67938404 67938441 L1MCa 1829 + 1568 1605 99816 37 chain 491247 chr3 198295559 + 67947816 67953946 L1PA6 6164 + 0 6162 3392 449 9 1 117 1 0 205 15 32 34 0 39 1456 19 0 74 3 4 778 0 1 103 7 8 208 4 0 470 0 1 15 2 1 682 11 12 311 1 2 184 0 1 643 0 1 20 1 0 111 5 7 38 2 0 5 1 3 146 chain 10299 chr3 198295559 + 67958850 67958979 MER85 139 + 0 139 69808 94 0 10 35 chain 109015 chr3 198295559 + 67960527 67961994 L1PA8 5853 + 4378 5853 17180 500 1 2 127 0 2 75 0 2 1 1 0 67 13 14 51 3 10 334 2 1 39 7 5 31 0 2 38 1 0 14 7 6 41 2 1 19 1 0 76 1 2 15 chain 5060 chr3 198295559 + 67973111 67973183 MER33 330 + 123 194 85349 36 1 0 35 chain 4034 chr3 198295559 + 67991899 67991950 MLT2B3 573 + 514 572 91212 7 0 7 44 chain 5070 chr3 198295559 + 68217151 68217243 MADE1 96 + 11 96 85309 27 19 12 46 chain 19537 chr3 198295559 + 68252760 68253067 THE1B 368 + 0 310 56974 169 1 0 5 8 7 17 10 17 13 17 15 67 chain 117915 chr3 198295559 + 68260600 68261926 L1PA4 6152 + 4820 6151 15897 484 0 6 508 1 0 333 chain 7521 chr3 198295559 + 68293292 68293391 L1PA8 5853 + 5752 5853 76074 8 1 0 34 0 3 56 chain 488933 chr3 198295559 + 68389567 68395948 L1PA7 6471 + 3 6464 3446 307 8 11 87 4 6 29 1 5 602 6 8 150 4 0 52 1 2 237 2 1 261 2 0 63 0 4 471 0 1 315 0 10 7 11 0 100 0 1 362 1 5 125 1 2 301 0 1 20 0 4 19 0 4 28 10 2 221 29 23 151 2 1 481 3 64 131 0 2 269 2 0 229 6 11 187 1 0 43 0 1 63 0 1 118 17 20 17 0 1 70 3 5 55 1 2 182 9 9 41 65 50 253 17 18 95 0 11 33 chain 42315 chr3 198295559 + 68397965 68398473 L1PA8 5853 + 4240 4748 33179 122 3 2 316 0 1 67 chain 86239 chr3 198295559 + 68440975 68442002 HERVL-int 5654 + 2827 3854 20380 1027 chain 22065 chr3 198295559 + 68480765 68481136 THE1B 368 + 0 368 53741 100 22 23 53 43 39 91 1 0 4 1 2 56 chain 47359 chr3 198295559 + 68491166 68491697 L1PA3long 6157 + 5624 6156 30518 268 1 0 257 0 2 5 chain 184577 chr3 198295559 + 68603954 68606765 L1PA10 4194 + 1233 4150 10359 290 0 3 86 1 0 200 0 159 240 3 0 11 0 3 139 0 3 34 13 211 17 0 1 43 0 2 32 0 2 206 2 0 84 10 8 5 0 2 127 17 1 36 0 1 56 0 1 55 4 8 8 0 3 134 0 2 104 292 35 49 0 1 18 20 24 56 0 2 367 18 14 34 chain 26708 chr3 198295559 + 68647256 68647620 THE1B 368 + 0 368 46674 169 1 0 32 11 16 89 1 0 4 0 1 57 chain 23840 chr3 198295559 + 68650564 68650830 L1P1 4361 + 3855 4122 51037 79 0 1 187 chain 55911 chr3 198295559 + 68656590 68657243 PABL_A 660 + 0 660 27589 81 0 9 300 2 0 270 chain 22435 chr3 198295559 + 68758282 68758644 THE1B 368 + 0 356 53227 169 1 0 21 5 10 13 3 6 11 1 0 12 1 0 64 37 26 24 chain 3107 chr3 198295559 + 68772881 68772915 MLT2B3 573 + 531 565 98724 34 chain 2942 chr3 198295559 + 68777385 68777418 MER3 215 - 5 38 100486 33 chain 23702 chr3 198295559 + 68778457 68778822 THE1B 368 + 0 368 51276 44 11 26 102 10 9 13 10 0 93 11 10 71 chain 16141 chr3 198295559 + 68780380 68780637 THE1B 368 + 0 265 60828 17 5 6 21 12 27 123 8 0 71 chain 6077 chr3 198295559 + 68780673 68780741 THE1B 368 + 300 368 80811 68 chain 150909 chr3 198295559 + 68804271 68805965 L1PA4 6152 + 4461 6151 12294 255 3 0 944 1 0 491 chain 444330 chr3 198295559 + 68810190 68815359 L1PA4 6152 + 6 5186 4485 26 2 0 495 18 18 466 1 0 229 1 0 1788 0 1 105 0 3 79 0 3 46 0 2 31 2 3 1053 0 4 749 0 1 78 chain 26868 chr3 198295559 + 68841064 68841351 AluYa5 310 + 23 310 46447 287 chain 24539 chr3 198295559 + 68871010 68871289 L1PA8 5853 + 5148 5427 49964 279 chain 3679 chr3 198295559 + 68938669 68938769 L1MB3 1562 + 1444 1546 93749 22 31 37 5 3 0 15 1 0 23 chain 95611 chr3 198295559 + 68966025 68967128 L1PA6 6164 + 5062 6162 18833 1092 3 0 8 chain 4590 chr3 198295559 + 69002266 69002340 MLT1F2 592 + 497 570 87846 14 2 0 23 1 2 34 chain 42749 chr3 198295559 + 69014764 69015325 MER41A 554 + 0 554 32916 4 1 0 337 0 3 91 22 0 32 1 14 73 chain 27635 chr3 198295559 + 69188495 69188784 AluYb8 318 + 20 309 45411 289 chain 24528 chr3 198295559 + 69227392 69227686 AluSq10 312 + 11 307 49982 8 0 1 80 0 1 206 chain 14024 chr3 198295559 + 69227720 69227988 L1MC2 1988 + 1701 1988 63557 94 1 0 27 18 50 45 55 43 28 chain 5133 chr3 198295559 + 69239633 69239754 L1MB3 1562 + 1385 1480 84999 35 36 13 6 2 0 13 1 0 28 chain 3710 chr3 198295559 + 69260876 69260926 LTR12C 1709 + 807 975 93538 30 0 118 20 chain 124922 chr3 198295559 + 69337028 69338460 L1PA4 6152 + 4712 6145 14720 1280 1 2 151 chain 536262 chr3 198295559 + 69344860 69350993 L1PA5 6144 + 3 6142 1551 642 0 1 135 6 9 557 0 1 2102 2 1 615 0 11 83 0 1 1009 0 1 811 7 0 153 4 0 7 chain 32385 chr3 198295559 + 69356176 69356587 MLT2A1 477 + 0 404 40049 166 9 6 213 4 0 19 chain 52795 chr3 198295559 + 69394499 69395182 L1PA8 5853 + 5176 5853 28640 244 0 1 118 4 5 20 1 0 45 4 1 74 1 0 52 6 5 19 1 0 46 1 0 47 chain 10247 chr3 198295559 + 69455013 69455406 LTR12C 1709 + 650 1533 69906 65 0 444 48 24 0 8 213 283 35 chain 186160 chr3 198295559 + 69501567 69503666 L1PA5 6144 + 4018 6115 10289 1152 3 1 944 chain 115927 chr3 198295559 + 69609205 69610778 THE1B-int 1605 + 0 1598 16251 113 0 3 150 0 5 55 0 1 105 0 25 122 0 1 81 67 51 50 24 30 806 chain 16247 chr3 198295559 + 69614264 69614487 MER30 238 + 0 232 60689 107 8 20 67 4 1 37 chain 10593 chr3 198295559 + 69615127 69615245 L1PA2 6032 + 5912 6030 69238 118 chain 12499 chr3 198295559 + 69645149 69645406 L1PB3 3668 + 3391 3620 65988 87 19 4 18 5 3 25 3 1 37 7 3 13 2 1 12 7 4 15 1 0 6 chain 2744 chr3 198295559 + 69661072 69661121 LTR12C 1709 + 931 981 102008 27 8 9 14 chain 3344 chr3 198295559 + 69661137 69661177 LTR12C 1709 + 837 877 96657 40 chain 142076 chr3 198295559 + 69677273 69678929 LTR12C 1709 + 3 1709 12928 540 0 8 259 0 40 262 1 0 4 4 2 106 0 4 42 0 1 438 chain 24135 chr3 198295559 + 69751764 69752208 MSTA 426 + 0 426 50597 22 8 9 66 6 7 101 42 41 83 47 22 57 0 6 12 chain 43411 chr3 198295559 + 69752208 69752743 MSTA-int 1630 + 0 536 32495 457 0 1 78 chain 26834 chr3 198295559 + 69860324 69860622 AluYd8 298 + 0 294 46493 97 2 0 23 2 0 174 chain 23942 chr3 198295559 + 69909046 69909391 THE1A 353 + 9 351 50875 73 8 7 20 2 1 30 4 0 69 11 14 128 chain 124262 chr3 198295559 + 69909393 69910968 THE1A-int 1579 + 0 1579 14803 301 1 2 30 1 0 68 1 0 261 22 19 598 10 5 165 4 17 113 chain 28717 chr3 198295559 + 69910968 69911312 THE1A 353 + 0 342 43762 108 2 0 234 chain 90238 chr3 198295559 + 69919878 69920886 LTR13 1007 + 0 1007 19642 365 1 0 642 chain 21649 chr3 198295559 + 69927256 69927535 L1PA8 5853 + 5580 5853 54293 28 2 0 73 1 0 8 1 0 51 2 1 19 1 0 93 chain 7194 chr3 198295559 + 69958969 69959164 L1PB1 5432 + 5268 5430 76961 12 1 0 16 3 0 17 57 33 23 1 0 24 1 0 10 2 1 14 1 0 8 1 0 4 chain 27369 chr3 198295559 + 69976600 69976952 MLT2A1 477 + 0 351 45740 142 0 1 27 4 1 8 0 1 171 chain 450498 chr3 198295559 + 69977083 69982667 HERVL-int 5654 + 0 5608 4381 145 3 0 1017 7 17 782 0 9 51 1 2 65 18 0 161 1 2 4 1 0 21 4 5 86 68 68 748 0 1 862 0 7 17 0 1 452 0 6 23 0 9 531 0 1 132 2 1 382 chain 29151 chr3 198295559 + 69982717 69983090 MLT2A1 477 + 4 376 43119 138 1 2 24 5 2 11 0 1 194 chain 8647 chr3 198295559 + 70041674 70041788 MER2 342 + 131 245 73359 114 chain 4803 chr3 198295559 + 70051406 70051484 MADE1 96 - 0 96 86683 16 1 0 22 1 21 21 1 0 16 chain 48955 chr3 198295559 + 70141930 70142675 L1PB1 5432 + 4714 5420 29966 187 19 20 182 1 2 11 9 0 22 1 0 9 1 0 9 6 2 9 2 0 53 2 1 16 1 0 43 1 0 16 3 0 6 20 10 15 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 27889 chr3 198295559 + 70144587 70144952 THE1B 368 + 0 368 45052 15 2 0 25 0 5 114 2 1 4 1 0 82 0 1 23 0 1 97 chain 4393 chr3 198295559 + 70251668 70251719 MADE1 96 + 45 96 88922 51 chain 27680 chr3 198295559 + 70270680 70271042 L1PA7 6471 + 6104 6468 45350 32 0 1 85 11 12 234 chain 171752 chr3 198295559 + 70338407 70340404 L1PA5 6144 + 4137 6140 11010 107 0 1 777 1 0 841 12 24 235 0 1 8 7 0 9 chain 13361 chr3 198295559 + 70357533 70357697 L1PA8A 6298 + 6127 6291 64523 164 chain 21195 chr3 198295559 + 70460437 70460793 THE1A 353 + 0 353 54894 13 2 0 34 7 8 26 54 53 121 2 1 97 chain 5703 chr3 198295559 + 70462396 70462468 THE1A 353 + 7 80 82329 40 0 1 32 chain 12480 chr3 198295559 + 70462585 70462738 THE1A 353 + 200 353 66018 153 chain 11242 chr3 198295559 + 70612301 70612516 LTR12C 1709 + 949 1086 68177 102 78 0 35 chain 1842 chr3 198295559 + 70612440 70612481 LTR12C 1709 + 650 691 69917 41 chain 2906 chr3 198295559 + 70612548 70612581 LTR12C 1709 + 795 828 100797 33 chain 3908 chr3 198295559 + 70612581 70612668 LTR12C 1709 + 750 877 69917 67 0 40 20 chain 58327 chr3 198295559 + 70617119 70617866 LTR17 781 + 0 781 26858 119 0 9 79 4 5 42 9 10 63 1 0 67 4 5 316 0 22 19 0 1 24 chain 231355 chr3 198295559 + 70660176 70662827 L1PA5 6144 + 3477 6138 8712 23 0 1 181 1 0 182 0 1 462 11 18 949 7 8 733 0 1 102 chain 27713 chr3 198295559 + 70688951 70689285 L1P1 4361 + 3414 3748 45297 334 chain 29703 chr3 198295559 + 70691680 70692039 L1PA7 6471 + 5144 5503 42363 359 chain 65161 chr3 198295559 + 70782792 70783503 L1PA3long 6157 + 5438 6149 25143 711 chain 5584 chr3 198295559 + 70808362 70808431 U6 107 + 14 86 82879 30 0 3 39 chain 36827 chr3 198295559 + 70859527 70859990 LTR2 463 + 0 463 36864 299 13 12 51 12 13 88 chain 6549 chr3 198295559 + 70859990 70860089 MER2 342 + 183 273 79160 75 9 0 15 chain 4849 chr3 198295559 + 70878704 70878772 MADE1 96 + 11 96 86432 13 4 21 51 chain 5324 chr3 198295559 + 70921812 70921875 MER58A 224 + 55 118 84078 63 chain 149875 chr3 198295559 + 71013396 71015150 L1PA5 6144 + 4379 6144 12356 639 1 0 15 3 0 217 0 9 12 1 6 17 1 0 420 4 5 287 1 0 34 0 4 88 3 1 11 chain 20679 chr3 198295559 + 71082396 71082635 L1PA7 6471 + 6230 6470 55525 91 0 1 148 chain 43338 chr3 198295559 + 71324272 71324770 L1PA5 6144 + 5640 6138 32541 498 chain 112372 chr3 198295559 + 71330951 71332481 LTR12C 1709 + 0 1709 16767 240 8 9 11 0 1 16 23 24 37 0 43 83 0 3 6 13 1 180 0 119 64 1 0 234 0 47 88 24 0 18 11 4 31 0 1 6 3 1 148 0 10 202 1 0 82 chain 13865 chr3 198295559 + 71440001 71440203 L1MB2 1706 + 1438 1665 63773 101 1 5 25 7 29 13 1 0 54 chain 16390 chr3 198295559 + 71465805 71466053 MER1B 344 + 93 339 60536 122 5 1 45 23 25 53 chain 3512 chr3 198295559 + 71518753 71518794 MLT1J1 437 + 396 437 95164 41 chain 27946 chr3 198295559 + 71602722 71603026 AluYb8 318 + 0 300 44957 126 4 0 174 chain 5803 chr3 198295559 + 71606079 71606188 L1ME1 1623 + 520 638 81903 27 10 18 40 7 8 25 chain 296129 chr3 198295559 + 71665586 71669402 L1PA7 6471 + 2940 6460 6948 160 0 4 284 0 4 213 0 1 130 0 1 277 309 0 240 0 2 231 0 1 73 6 4 9 1 0 4 5 6 867 0 8 88 2 3 589 1 0 133 6 1 55 1 0 132 chain 5465 chr3 198295559 + 71802949 71803015 MLT2B2 565 + 4 70 83382 66 chain 9271 chr3 198295559 + 71826407 71826520 L1PA8 5853 + 5741 5853 71973 19 1 0 93 chain 43291 chr3 198295559 + 71836520 71837066 MER41A 554 + 0 547 32583 127 8 9 411 chain 42496 chr3 198295559 + 71838239 71838872 MER4A1_ 611 + 0 611 33063 122 40 20 239 0 1 4 28 29 12 8 0 81 0 3 86 0 1 13 chain 2333 chr3 198295559 + 71844237 71844285 U5 65 + 0 48 104534 22 2 0 5 3 5 16 chain 36172 chr3 198295559 + 71925472 71925971 LTR7 482 + 0 482 37292 173 51 0 51 5 37 28 0 1 129 13 14 49 chain 59273 chr3 198295559 + 71928901 71929557 SVA_D 2077 + 1418 2077 26577 637 0 3 19 chain 9653 chr3 198295559 + 71959143 71959280 L1PA8 5853 + 5691 5853 71155 49 2 1 18 0 26 68 chain 4629 chr3 198295559 + 72006056 72006113 MLT1C 463 + 17 74 87651 57 chain 49984 chr3 198295559 + 72006113 72006766 PABL_A 660 + 0 653 29566 62 5 0 6 4 9 50 1 0 149 6 7 370 chain 3994 chr3 198295559 + 72007153 72007265 MER31A 484 + 0 96 91491 20 53 37 39 chain 32673 chr3 198295559 + 72007288 72007738 MER4A1 472 + 0 472 39785 14 0 2 50 1 0 119 1 0 4 0 1 33 0 36 23 7 0 54 7 1 54 13 11 70 chain 59295 chr3 198295559 + 72021356 72022122 MER4E1 777 + 0 770 26568 24 1 2 221 1 0 97 1 0 75 0 2 117 2 0 5 4 8 140 0 1 78 chain 29669 chr3 198295559 + 72023125 72023525 LTR7 482 + 0 475 42410 69 8 46 107 5 6 36 0 31 10 0 3 78 0 2 87 chain 318144 chr3 198295559 + 72023534 72027239 HERVH-int 3825 + 0 3825 6440 333 1 0 148 11 119 30 4 42 25 1 0 28 38 1 30 0 1 6 0 2 13 0 3 241 0 1 1169 0 1 899 0 3 591 0 2 137 chain 30203 chr3 198295559 + 72028494 72028900 LTR7 482 + 0 476 41846 69 8 46 109 8 9 28 1 32 183 chain 3521 chr3 198295559 + 72034912 72034951 LTR33A_ 513 + 48 87 95097 39 chain 23361 chr3 198295559 + 72053105 72053450 THE1B 368 + 0 366 51837 40 0 15 35 6 7 71 1 0 4 3 2 49 11 18 125 chain 23480 chr3 198295559 + 72095065 72095356 L1PA8A 6298 + 5999 6291 51619 257 7 8 27 chain 33532 chr3 198295559 + 72183566 72184167 L1PA15 4387 + 3754 4357 39055 55 5 3 18 10 7 50 7 5 40 1 0 99 8 16 52 0 21 12 11 10 41 2 1 23 4 0 10 4 10 40 14 3 44 3 1 12 8 2 28 chain 5186 chr3 198295559 + 72213462 72213531 MER58A 224 + 37 166 84750 60 0 60 9 chain 6664 chr3 198295559 + 72262327 72262407 MADE1 96 + 0 96 78759 29 0 16 51 chain 25711 chr3 198295559 + 72276378 72276744 L1P2 5180 + 2 1113 48151 27 13 26 33 0 729 267 12 15 14 chain 26293 chr3 198295559 + 72330575 72330860 AluYa5 310 + 29 310 47281 97 4 0 184 chain 7429 chr3 198295559 + 72412948 72413089 MLT1A1 405 + 167 344 76318 16 2 4 23 9 41 30 16 18 45 chain 5487 chr3 198295559 + 72413268 72413334 Tigger7 736 + 56 122 83287 66 chain 22047 chr3 198295559 + 72479953 72480308 THE1D 372 + 2 372 53773 49 5 12 97 7 8 12 39 44 70 0 2 76 chain 4108 chr3 198295559 + 72512051 72512107 MLT1F1 559 + 237 294 90719 34 1 2 21 chain 3410 chr3 198295559 + 72558858 72558898 MSTA 426 + 385 425 95983 40 chain 13165 chr3 198295559 + 72566230 72566413 MER2 342 + 136 319 64831 20 2 0 9 0 1 128 4 5 20 chain 68803 chr3 198295559 + 72608907 72609686 L1PA5 6144 + 5365 6141 24256 166 0 1 603 4 0 6 chain 3986 chr3 198295559 + 72666565 72666613 MIR 256 + 65 113 91543 48 chain 15193 chr3 198295559 + 72705646 72705840 Tigger2a 444 + 0 195 62050 62 8 9 124 chain 3603 chr3 198295559 + 72745796 72745836 5S 121 + 0 40 94394 40 chain 119738 chr3 198295559 + 72787700 72789094 SVA_B 1603 + 6 1603 15574 13 7 12 11 4 0 496 1 41 237 0 40 31 0 122 594 chain 10751 chr3 198295559 + 72789292 72789455 MER30B 195 + 16 191 68951 72 7 16 49 5 8 30 chain 10899 chr3 198295559 + 72852640 72852770 L1PA2 6032 + 5906 6032 68699 113 2 0 8 2 0 5 chain 17815 chr3 198295559 + 72875404 72875662 AluSc 308 + 39 300 58868 62 1 0 124 6 15 32 10 7 13 2 0 8 chain 46768 chr3 198295559 + 72880317 72881398 L1PB1 5432 + 4666 5422 30744 134 2 0 174 0 1 49 1 2 11 0 1 44 14 32 24 1 0 8 1 0 11 9 5 6 2 0 52 2 1 16 1 0 45 1 0 13 1 0 5 2 0 5 358 33 8 2 0 24 1 0 22 1 0 12 1 0 18 chain 5456 chr3 198295559 + 72941904 72941995 L1MC4a 1092 + 45 130 83422 46 8 3 9 1 0 27 chain 4165 chr3 198295559 + 72994478 72994528 MER3 215 + 115 165 90349 50 chain 12404 chr3 198295559 + 73026622 73026816 MER30 238 + 30 232 66128 75 4 0 9 10 28 11 6 0 79 chain 12219 chr3 198295559 + 73111003 73111165 U2 167 + 8 164 66439 124 2 0 9 5 1 22 chain 116800 chr3 198295559 + 73264284 73265973 L1PREC2 3366 + 1349 3041 16085 369 0 32 21 1 0 180 0 1 67 1 2 5 1 0 17 0 5 191 2 1 40 0 1 21 2 1 414 8 7 22 5 6 21 1 2 24 13 17 34 1 0 3 3 0 14 29 21 11 12 7 14 4 2 28 3 0 12 23 9 35 6 4 31 chain 108991 chr3 198295559 + 73269010 73270292 LTR12C 1709 + 0 1709 17184 525 0 1 266 9 325 107 0 4 213 0 101 27 0 1 71 0 4 64 chain 35465 chr3 198295559 + 73313506 73313989 L1PA13 3608 + 2957 3433 37745 168 13 12 22 1 0 114 2 0 62 1 0 29 0 1 26 1 0 5 2 0 37 chain 8503 chr3 198295559 + 73348211 73348405 L1PB1 5432 + 5255 5427 73669 26 1 0 15 2 0 6 16 6 19 7 4 11 7 5 23 2 1 20 1 0 13 1 0 19 1 0 4 chain 5712 chr3 198295559 + 73351948 73352106 MIR 256 + 29 220 82282 26 18 17 44 47 81 23 chain 21317 chr3 198295559 + 73386884 73387244 THE1B 368 + 0 368 54743 17 0 2 92 1 3 6 1 0 57 56 63 66 8 6 56 chain 7001 chr3 198295559 + 73468139 73468401 MLT1D 503 + 185 455 77593 14 79 77 78 71 81 20 chain 3799 chr3 198295559 + 73630787 73630831 L1MB7 1623 + 1378 1422 92846 44 chain 31164 chr3 198295559 + 73646837 73647275 MLT2A1 477 + 0 477 41011 52 0 1 114 6 3 31 0 5 3 5 0 122 3 4 50 3 39 43 0 4 6 chain 5899 chr3 198295559 + 73667204 73667275 MER45A 178 + 85 156 81493 71 chain 8007 chr3 198295559 + 73697609 73697735 MER2 342 + 131 279 74868 4 0 1 42 4 12 39 1 14 36 chain 4459 chr3 198295559 + 73765867 73765920 L1P4 1494 + 254 307 88561 53 chain 44283 chr3 198295559 + 73780836 73781385 MER41A 554 + 0 554 31964 468 8 13 73 chain 130569 chr3 198295559 + 73806815 73808385 THE1A-int 1579 + 0 1574 13972 502 3 0 179 0 1 567 0 3 68 0 2 247 0 1 4 chain 28967 chr3 198295559 + 73808390 73808744 THE1A 353 + 0 353 43382 110 1 0 243 chain 133455 chr3 198295559 + 73920297 73921759 L1PA3long 6157 + 4271 5733 13695 1462 chain 522799 chr3 198295559 + 73990712 73996659 L1PA4 6152 + 3 5971 2147 584 6 7 650 1 0 780 0 1 295 3 0 739 0 1 232 0 1 1405 0 1 992 0 2 174 0 18 86 chain 4240 chr3 198295559 + 74068054 74068189 MER5A 189 + 0 133 89877 46 73 71 16 chain 37716 chr3 198295559 + 74130212 74130805 L1MA2 4263 + 2680 3295 36262 8 0 12 44 2 0 29 33 35 65 1 0 5 5 26 7 12 0 175 5 6 178 0 1 24 chain 36852 chr3 198295559 + 74193939 74198104 MER9a1 513 + 0 513 36845 174 3650 0 320 7 5 14 chain 387923 chr3 198295559 + 74274388 74279776 L1PB1 5432 + 36 5419 5356 120 0 1 43 1 0 408 0 1 169 4 7 47 10 14 368 5 7 18 1 0 8 8 38 119 15 0 189 2 0 250 0 4 37 0 1 15 0 1 184 1 0 5 0 1 95 5 9 60 11 14 225 3 1 339 1 0 6 3 4 37 1 12 37 10 14 408 0 1 226 1 0 4 0 1 28 0 2 120 2 3 21 0 1 179 0 1 8 11 9 7 0 3 32 2 8 490 4 5 108 26 21 109 0 1 54 8 0 10 8 16 102 0 1 180 1 2 9 35 0 8 13 12 13 1 0 11 4 0 11 6 4 47 2 1 10 7 6 9 0 1 34 1 0 15 1 0 4 2 0 13 13 4 10 2 0 5 1 0 10 9 7 21 1 0 21 1 0 10 1 0 18 chain 138863 chr3 198295559 + 74318929 74320496 L1PA4 6152 + 4403 5969 13201 890 2 1 675 chain 7219 chr3 198295559 + 74320955 74321182 L1PA16 3655 + 3410 3619 76887 48 27 29 50 86 66 16 chain 5674 chr3 198295559 + 74330002 74330074 Tigger3b 1229 + 10 82 82453 72 chain 20641 chr3 198295559 + 74396493 74396766 AluY 311 + 29 304 55571 103 18 19 108 0 1 44 chain 5312 chr3 198295559 + 74534791 74534871 MADE1 96 - 0 96 84138 38 5 21 37 chain 42028 chr3 198295559 + 74546322 74546872 MLT2A2 560 + 0 560 33344 180 1 0 219 3 14 147 chain 4394 chr3 198295559 + 74555888 74555948 THE1D 372 + 302 361 88918 34 2 1 24 chain 52833 chr3 198295559 + 74560581 74561185 L1PA5 6144 + 5541 6143 28632 350 2 0 252 chain 172405 chr3 198295559 + 74588220 74590118 L1PA3long 6157 + 4259 6157 10979 47 0 1 1695 1 0 155 chain 106007 chr3 198295559 + 74595485 74596662 L1PA3long 6157 + 3790 4971 17566 564 0 4 613 chain 3303 chr3 198295559 + 74679568 74679700 L1MB3 1562 + 1399 1507 96982 14 60 34 21 1 0 16 5 8 15 chain 254089 chr3 198295559 + 74688037 74690946 L1PA5 6144 + 3234 6143 8133 21 0 1 419 2 0 1600 0 4 19 4 7 584 1 2 106 7 0 146 chain 116225 chr3 198295559 + 74702551 74703828 L1PA3long 6157 + 4875 6157 16182 903 0 6 231 1 0 142 chain 100798 chr3 198295559 + 74758537 74759990 L1PB1 5432 + 3960 5404 18208 179 2 0 485 3 0 52 0 3 5 0 1 64 1 2 5 1 0 47 0 1 93 0 1 81 1 0 4 0 2 117 0 4 6 1 2 20 1 0 13 17 12 8 2 0 53 2 1 15 1 0 41 12 11 8 1 0 6 16 6 19 22 30 13 1 0 21 1 0 13 chain 18940 chr3 198295559 + 74776444 74776661 L1PA2 6032 + 5815 6032 57604 217 chain 505140 chr3 198295559 + 74794142 74800339 L1PA6 6164 + 0 6158 2961 371 1 44 381 17 0 164 0 1 512 0 1 18 99 0 318 1 0 30 10 11 153 0 1 111 0 3 209 1 2 866 0 1 43 0 4 56 1 0 21 0 15 610 6 7 850 0 3 208 0 1 969 0 3 16 14 6 6 0 8 135 chain 36531 chr3 198295559 + 74825029 74825504 LTR2B 499 + 9 499 37061 5 1 0 60 3 0 37 3 22 175 0 1 8 1 0 182 chain 56423 chr3 198295559 + 74826604 74827362 Harlequin-int 5206 + 127 887 27449 5 0 3 8 5 0 15 2 0 10 0 2 118 0 1 17 0 1 51 0 5 12 0 2 22 3 2 84 3 0 137 3 0 142 0 2 121 chain 28099 chr3 198295559 + 74830895 74831316 LTR2B 499 + 0 499 44718 13 0 1 60 3 0 37 8 87 34 1 2 13 5 0 12 0 5 40 7 8 5 1 0 182 chain 27940 chr3 198295559 + 74910608 74910961 THE1A 353 + 0 351 44968 110 1 0 92 1 0 149 chain 30762 chr3 198295559 + 74928205 74928630 L1PA8 5853 + 5444 5853 41338 67 8 4 6 5 0 41 1 0 47 2 0 70 1 0 9 1 0 51 5 4 17 2 1 92 chain 6134 chr3 198295559 + 74939919 74940081 L1MC1 2226 + 1967 2111 80589 11 3 0 15 2 0 54 36 30 6 5 0 22 2 0 6 chain 29380 chr3 198295559 + 74948040 74948418 MLT2A1 477 + 8 383 42771 161 4 1 213 chain 45774 chr3 198295559 + 74955477 74955969 L1HS 6032 + 5541 6032 31180 4 1 0 487 chain 20787 chr3 198295559 + 74972425 74972681 L1PA7 6471 + 6215 6467 55384 246 4 0 6 chain 85692 chr3 198295559 + 74973143 74974277 L1PA8 5853 + 3988 5853 20504 66 0 8 153 2 1 124 1 0 201 0 3 9 7 736 272 18 17 32 2 0 68 2 1 14 1 0 50 1 0 17 1 0 93 chain 85730 chr3 198295559 + 74975538 74976478 L1PA4 6152 + 5032 5972 20495 940 chain 3319 chr3 198295559 + 75046126 75046165 MER5A1 166 + 2 41 96855 39 chain 6717 chr3 198295559 + 75050722 75050852 L1MC1 2226 + 1888 2012 78578 25 12 11 56 17 12 20 chain 7081 chr3 198295559 + 75085698 75085853 Ricksha_c 1012 + 86 225 77325 56 11 7 21 13 7 23 12 7 14 1 0 4 chain 15844 chr3 198295559 + 75131275 75131442 L1HS 6032 + 154 321 61232 167 chain 26738 chr3 198295559 + 75241512 75241914 MER57B1 401 + 0 401 46628 136 10 2 52 19 20 42 4 1 22 0 3 44 1 0 16 0 7 56 chain 8566 chr3 198295559 + 75250546 75250665 MER30 238 + 85 223 73527 20 6 25 93 chain 11767 chr3 198295559 + 75260530 75260663 L1PA2 6032 + 5898 6030 67271 114 1 0 18 chain 49047 chr3 198295559 + 75267430 75268018 LTR10C 591 + 0 591 29933 260 1 0 66 0 1 37 0 1 33 0 1 158 0 1 33 chain 153473 chr3 198295559 + 75288732 75290456 SVA_D 2077 + 58 2056 12149 331 0 3 172 40 0 354 0 136 39 1 0 137 0 176 650 chain 14343 chr3 198295559 + 75309277 75309445 LTR12 884 + 0 168 63126 168 chain 80456 chr3 198295559 + 75393192 75394152 LTR5_Hs 974 + 0 974 21534 50 0 3 405 0 4 311 0 1 117 0 6 77 chain 21878 chr3 198295559 + 75394988 75398142 LTR7B 505 + 0 441 54005 68 2769 13 27 0 10 53 43 79 5 1 0 25 5 0 85 1 0 35 0 4 37 chain 2856 chr3 198295559 + 75395058 75395088 LTR7B 505 + 109 139 101180 30 chain 23116 chr3 198295559 + 75398188 75398493 LTR7 482 + 144 482 52186 80 7 8 26 0 1 6 0 31 186 chain 5357 chr3 198295559 + 75439205 75439322 MLT1C 463 + 63 167 83925 56 0 1 4 36 22 21 chain 2976 chr3 198295559 + 75494172 75494206 MLT1I 406 + 367 401 100089 34 chain 69051 chr3 198295559 + 75510845 75511902 MER11A 1151 + 0 1144 24203 45 10 109 76 0 4 60 4 0 146 7 8 90 0 7 139 5 6 32 0 12 103 24 0 12 6 13 24 24 6 28 0 1 46 1 0 14 38 40 123 chain 32698 chr3 198295559 + 75536829 75537280 HERVK-int 6823 + 5125 5578 39767 25 0 1 8 0 1 4 6 5 103 0 3 198 1 0 4 0 1 36 1 0 9 5 4 51 chain 87436 chr3 198295559 + 75537718 75538747 LTR5A 1029 + 0 1029 20145 150 2 0 817 1 3 59 chain 6072 chr3 198295559 + 75551313 75551382 LTR5A 1029 + 960 1029 80830 69 chain 89867 chr3 198295559 + 75558968 75559999 LTR5A 1029 + 0 1029 19704 147 1 0 692 1 0 190 chain 19703 chr3 198295559 + 75569340 75569601 L1PA8 5853 + 5586 5842 56779 20 6 4 69 1 0 61 2 1 19 1 0 82 chain 12043 chr3 198295559 + 75572951 75573105 L1MA8 2339 + 1931 2082 66771 23 2 0 55 1 0 73 chain 106679 chr3 198295559 + 75587616 75589015 LTR12C 1709 + 0 1709 17474 266 15 16 32 1 0 24 18 61 65 0 2 184 0 278 184 9 6 100 1 0 6 11 4 333 1 0 66 1 0 82 chain 113507 chr3 198295559 + 75637129 75638927 L1PA8 5853 + 4382 5853 16611 215 5 6 251 0 5 43 0 1 17 0 2 84 2 7 49 336 0 19 5 6 477 1 0 47 2 0 46 8 9 16 1 0 5 2 1 52 2 1 18 3 2 92 chain 72043 chr3 198295559 + 75645327 75646291 LTR5_Hs 974 + 0 974 23527 459 0 4 155 13 14 26 1 2 8 1 0 5 3 6 137 9 11 147 chain 6170 chr3 198295559 + 75651102 75651216 L1MA6 2487 + 2067 2169 80450 30 26 14 58 chain 62013 chr3 198295559 + 75680423 75681219 L1PB1 5432 + 3877 4673 25865 328 0 2 170 2 3 4 1 0 22 4 5 215 3 0 47 chain 106259 chr3 198295559 + 75707470 75708765 L1P1 4361 + 1 1277 17533 573 1 0 256 17 0 396 5 4 47 chain 4886 chr3 198295559 + 75727078 75727134 MER11A 1151 + 85 141 86231 56 chain 89666 chr3 198295559 + 75747824 75748909 L1PA5 6144 + 3112 4200 19734 374 0 4 257 1 0 195 1 0 131 0 1 126 chain 95131 chr3 198295559 + 75775263 75781056 MER57-int 2662 + 168 2647 18891 12 0 5 48 0 2 78 2 0 94 0 5 7 39 0 20 317 6 52 0 4 46 0 1 65 6 9 71 18 14 239 1 0 304 10 12 43 1 0 84 3889 943 92 18 12 68 36 21 10 0 1 7 2 0 6 1 0 26 29 23 27 3 0 22 chain 3535 chr3 198295559 + 75806186 75806225 HERVK9-int 4720 + 4566 4605 94985 39 chain 36721 chr3 198295559 + 75852485 75852938 L1PA5 6144 + 5688 6142 36947 302 8 1 8 0 7 52 0 1 83 chain 115679 chr3 198295559 + 75866693 75867963 L1PA4 6152 + 4078 5348 16290 1270 chain 4200 chr3 198295559 + 75889895 75890155 MLT1G3 592 + 187 454 90123 39 1 0 9 188 196 23 chain 39347 chr3 198295559 + 76042550 76043033 LTR2B 499 + 9 499 35116 4 0 1 57 1 0 39 0 7 189 0 1 10 1 0 182 chain 80978 chr3 198295559 + 76069784 76070833 MER11C 1089 + 0 1060 21440 247 0 9 59 1 5 349 0 1 20 1 5 42 0 1 125 0 1 56 1 0 8 10 2 130 chain 526400 chr3 198295559 + 76214343 76220338 L1PA4 6152 + 167 6152 1982 904 0 1 140 0 1 976 0 1 760 3 0 290 0 1 275 0 1 1147 0 1 355 12 0 364 1 0 768 chain 85534 chr3 198295559 + 76247720 76248654 L1PA2 6032 + 5094 6032 20531 88 0 4 846 chain 39952 chr3 198295559 + 76263695 76264235 L1PA8 5853 + 5320 5853 34697 244 1 0 44 2 0 71 1 0 6 21 20 39 1 0 16 2 1 92 chain 6505 chr3 198295559 + 76280425 76280560 MLT1A 405 + 224 360 79327 64 43 44 28 chain 28379 chr3 198295559 + 76333815 76334148 L1PA5 6144 + 5806 6140 44302 10 0 1 323 chain 344743 chr3 198295559 + 76394662 76398485 L1PA3long 6157 + 2326 6157 5990 65 0 3 745 0 5 3013 chain 32529 chr3 198295559 + 76414422 76414779 L1PA2 6032 + 5675 6030 39923 344 2 0 11 chain 9809 chr3 198295559 + 76418073 76418219 MER57F 435 + 108 257 70803 47 4 3 13 1 5 81 chain 229378 chr3 198295559 + 76445466 76448040 L1PA4 6152 + 3565 6139 8762 2574 chain 11985 chr3 198295559 + 76503441 76503703 L1MA8 2339 + 1781 2038 66865 27 36 32 92 4 0 23 6 0 6 33 43 5 1 0 29 chain 31765 chr3 198295559 + 76538911 76539360 L1PA8 5853 + 5411 5853 40525 153 1 0 44 2 0 70 2 1 14 9 8 42 3 2 9 10 9 90 chain 15855 chr3 198295559 + 76552115 76552312 MER2 342 + 139 336 61219 197 chain 19551 chr3 198295559 + 76612422 76612711 L1PA8 5853 + 5565 5853 56955 45 2 0 64 21 28 6 4 0 32 2 1 19 1 0 93 chain 50110 chr3 198295559 + 76739061 76739627 L1PA3long 6157 + 5578 6147 29519 480 0 4 78 1 0 7 chain 226052 chr3 198295559 + 76749824 76752446 L1PA5 6144 + 3508 6144 8861 365 0 1 411 0 2 652 7 0 214 4 13 31 5 5 69 1 5 107 1 0 482 1 5 162 1 0 61 0 3 48 chain 44130 chr3 198295559 + 76816637 76817218 L1PA7 6471 + 5877 6465 32062 213 0 1 40 2 0 166 28 28 35 0 6 66 0 2 31 chain 25062 chr3 198295559 + 77023036 77023388 THE1A 353 + 1 353 49181 109 1 0 31 0 1 45 1 0 9 0 2 35 0 3 5 4 1 51 4 3 57 chain 44837 chr3 198295559 + 77056933 77057448 L1PA5 6144 + 5605 6121 31671 170 0 1 345 chain 8643 chr3 198295559 + 77109237 77109346 L1MB2 1706 + 1582 1690 73363 16 1 0 92 chain 20606 chr3 198295559 + 77118922 77119288 THE1D 372 + 0 372 55626 40 22 27 32 32 28 28 2 3 13 18 23 4 1 0 174 chain 10130 chr3 198295559 + 77164371 77164564 SVA_F 1814 + 863 1024 42547 17 0 2 66 48 14 62 chain 3923 chr3 198295559 + 77164457 77164502 SVA_F 1814 + 1093 1138 59416 45 chain 89286 chr3 198295559 + 77164564 77165581 SVA_F 1814 + 664 1814 19804 41 2 122 28 1 0 25 0 1 66 0 15 213 1 0 12 2 1 626 chain 38938 chr3 198295559 + 77185452 77186122 L1PB1 5432 + 4749 5378 35405 100 1 9 245 19 0 11 1 0 24 1 0 9 17 12 8 2 0 53 2 1 14 2 1 44 1 0 12 32 19 16 2 0 5 1 0 14 2 0 32 chain 15329 chr3 198295559 + 77228521 77228747 L1PA7 6471 + 6250 6470 61873 47 33 26 128 0 1 18 chain 40587 chr3 198295559 + 77401928 77402441 L1PA7 6471 + 5959 6467 34235 259 7 0 90 6 8 151 chain 4323 chr3 198295559 + 77506537 77506613 MER20 218 + 39 115 89332 29 12 15 5 3 0 27 chain 5136 chr3 198295559 + 77625725 77625868 MER58C 217 + 66 208 84990 17 1 0 8 1 0 10 27 20 5 2 0 7 0 2 5 2 0 8 1 12 42 1 0 6 chain 39325 chr3 198295559 + 77695705 77696149 L1PA4 6152 + 5706 6150 35132 444 chain 15395 chr3 198295559 + 77700785 77700988 L1PA6 6164 + 5951 6157 61787 80 4 7 119 chain 27200 chr3 198295559 + 77729168 77729533 THE1B 368 + 0 364 45966 13 2 0 27 6 11 121 4 3 27 2 0 92 1 0 70 chain 501570 chr3 198295559 + 77756448 77762685 L1PA7 6471 + 1 6465 3074 337 0 1 66 1 2 926 24 21 276 11 12 259 4 0 555 4 24 5 0 1 153 5 7 706 7 206 444 1 5 621 0 1 5 3 1 118 0 1 462 5 6 51 1 2 218 1 0 128 4 7 331 7 8 5 1 0 485 0 1 7 chain 81007 chr3 198295559 + 77965324 77966263 L1PA5 6144 + 5195 6135 21436 99 25 26 815 chain 5700 chr3 198295559 + 77971470 77971532 L1PA7 6471 + 4686 4748 82340 62 chain 28223 chr3 198295559 + 77971532 77971884 L1PA7 6471 + 4749 5103 44526 234 15 16 19 0 1 84 chain 113414 chr3 198295559 + 77971884 77973238 L1PA7 6471 + 5109 6470 16620 159 1 7 9 0 1 352 1 2 71 0 1 426 2 0 333 chain 29646 chr3 198295559 + 78029806 78030354 LTR12D 1347 + 40 820 42438 22 6 9 104 96 102 23 0 36 113 0 3 9 0 41 34 8 175 33 24 0 76 chain 23643 chr3 198295559 + 78056340 78056694 THE1A 353 + 0 353 51365 77 55 54 222 chain 117032 chr3 198295559 + 78108207 78109637 LTR12C 1709 + 0 1709 16051 262 0 1 19 18 19 349 0 278 183 1 0 6 3 1 106 0 4 53 0 1 77 3 0 350 chain 16834 chr3 198295559 + 78129276 78129563 THE1C 375 + 0 283 59995 15 2 0 34 67 65 169 chain 41360 chr3 198295559 + 78223692 78224153 L1PA4 6152 + 5675 6136 33754 461 chain 32103 chr3 198295559 + 78229317 78229963 MLT2A1 477 + 0 477 40271 165 8 5 9 0 1 24 0 1 7 2 0 30 1 2 13 3 0 128 4 0 12 16 0 12 175 31 37 chain 7017 chr3 198295559 + 78234382 78234471 L1MA3 4352 + 3919 4008 77538 89 chain 144191 chr3 198295559 + 78247206 78249425 MER61-int 3695 + 0 3691 12756 17 27 22 7 1 0 58 5 6 88 39 0 27 1 2 33 15 14 51 7 0 86 34 20 37 22 0 168 2 0 127 0 1 82 9 7 50 11 10 39 0 2 234 1 0 192 80 1646 125 14 14 185 2 0 335 2 0 6 chain 39386 chr3 198295559 + 78266575 78267049 LTR2B 499 + 9 499 35093 5 1 0 51 2 0 46 0 19 369 chain 32030 chr3 198295559 + 78323653 78324104 LTR7 482 + 0 482 40326 86 50 0 15 15 14 16 1 52 47 0 31 221 chain 279257 chr3 198295559 + 78324106 78327784 HERVH-int 3825 + 0 3777 7444 212 0 11 309 5 0 38 2 1 8 2 1 9 4 0 14 7 1 14 1 0 13 3 0 7 19 18 41 1 0 16 21 0 12 189 5 39 0 1 9 1 0 444 15 0 312 0 1 4 9 85 56 8 35 166 1 0 51 0 1 367 0 1 365 0 1 402 9 11 15 0 3 21 8 218 144 0 10 285 chain 797 chr3 198295559 + 78324924 78324962 HERVH-int 3825 + 662 698 102998 21 2 0 15 chain 58223 chr3 198295559 + 78353054 78353809 MER4E1 777 + 0 769 26894 19 4 0 101 5 18 209 1 0 20 0 1 170 8 13 218 chain 12233 chr3 198295559 + 78376559 78376769 Tigger2a 444 + 173 381 66414 10 4 1 32 2 1 82 19 23 39 2 0 20 chain 28816 chr3 198295559 + 78389092 78389465 THE1C 375 + 2 375 43605 183 1 2 162 1 0 26 chain 5539 chr3 198295559 + 78436789 78436959 L1MC3 1789 + 1180 1321 83085 21 90 61 59 chain 547636 chr3 198295559 + 78487037 78493164 L1PA3long 6157 + 0 6157 888 837 0 1 303 0 2 424 0 15 154 0 2 124 0 8 411 1 0 4 0 1 437 0 1 490 0 1 1023 2 1 321 0 1 1596 chain 66277 chr3 198295559 + 78512851 78513647 L1PA6 6164 + 5369 6162 24884 634 14 15 138 4 0 6 chain 8323 chr3 198295559 + 78535932 78536032 THE1B 368 + 2 102 74104 100 chain 30586 chr3 198295559 + 78553381 78553757 MLT2A1 477 + 0 381 41480 139 1 2 27 0 4 209 chain 555217 chr3 198295559 + 78675184 78681343 L1PA3long 6157 + 6 6157 395 122 14 0 7 14 28 292 15 9 777 0 1 683 0 2 2311 2 1 236 4 0 1682 chain 69468 chr3 198295559 + 78720312 78721108 L1PA5 6144 + 5352 6144 24127 636 1 0 7 0 1 4 4 0 144 chain 146681 chr3 198295559 + 78778444 78780213 L1PA7 6471 + 4633 6417 12561 180 0 4 141 0 5 157 0 6 494 2 1 273 0 2 427 5 4 90 chain 113264 chr3 198295559 + 78808670 78809998 L1PA7 6471 + 5133 6470 16641 440 1 0 53 0 6 139 0 2 526 19 21 150 chain 3018 chr3 198295559 + 78892215 78892251 MER1B 344 + 137 173 99664 36 chain 26444 chr3 198295559 + 78896285 78896631 LTR7B 505 + 17 436 47063 88 0 10 60 0 38 12 3 27 27 1 3 77 1 0 77 chain 510833 chr3 198295559 + 78944532 78950349 L1PA4 6152 + 6 5829 2727 454 6 0 116 1 0 864 4 1 1723 0 1 517 1 10 469 0 1 100 0 3 135 0 1 975 1 2 451 chain 5583 chr3 198295559 + 78988970 78989124 L1MA5A 2387 + 2200 2301 82887 15 37 15 49 30 0 17 1 0 5 chain 70297 chr3 198295559 + 79000439 79001287 L1PA8 5853 + 5009 5853 23925 231 0 3 319 1 0 47 2 0 73 1 0 6 1 0 52 2 1 19 2 1 92 chain 2893 chr3 198295559 + 79046934 79046965 MLT1F2 592 + 561 592 100910 31 chain 240037 chr3 198295559 + 79048723 79051662 L1P2 5180 + 815 3750 8473 113 28 28 74 0 1 216 0 1 657 0 3 122 0 1 292 3 0 351 12 1 410 0 1 140 0 1 108 0 1 408 0 1 5 chain 89433 chr3 198295559 + 79053904 79058526 HERVK11-int 2540 + 678 2235 19768 57 11 6 10 30 21 21 15 7 18 5 0 7 32 9 44 3 0 13 1 0 50 65 26 19 3014 79 112 4 3 9 37 24 13 1 0 27 14 3 34 21 1 100 0 10 318 17 12 91 1 2 11 1 0 143 2 3 44 6 5 71 6 10 124 chain 199414 chr3 198295559 + 79060596 79062987 L1PA6 6164 + 3751 6160 9734 32 9 7 373 1 0 614 1 2 159 0 1 363 6 9 544 0 16 289 chain 102290 chr3 198295559 + 79133954 79135047 L1HS 6032 + 4935 6028 18037 1093 chain 107032 chr3 198295559 + 79173155 79174531 LTR12C 1709 + 0 1709 17431 266 0 1 28 5 6 77 9 21 65 0 2 184 0 119 68 1 0 74 0 207 104 13 6 390 8 7 84 chain 25083 chr3 198295559 + 79234472 79234877 L1PA16 3655 + 3242 3619 49146 44 10 8 121 0 1 163 51 24 16 chain 139863 chr3 198295559 + 79293585 79295608 L1PA7 6471 + 4766 6467 13108 60 1 0 14 0 7 101 326 0 673 1 0 77 0 2 436 1 0 177 0 1 4 1 2 141 4 0 6 chain 104416 chr3 198295559 + 79300039 79301347 LTR12C 1709 + 0 1709 17768 28 0 2 116 0 1 427 6 5 29 3 7 35 0 278 151 8 12 21 2 1 5 1 0 106 0 4 168 0 102 118 1 2 17 0 8 66 chain 76812 chr3 198295559 + 79325524 79326491 MER11C 1089 + 6 1063 22373 185 0 11 34 0 70 7 0 4 215 34 35 123 0 4 5 1 0 38 1 2 324 chain 143983 chr3 198295559 + 79433574 79435222 L1PA5 6144 + 4505 6143 12773 316 1 0 38 14 1 623 0 4 656 chain 52840 chr3 198295559 + 79476019 79476900 L1PB1 5432 + 4590 5420 28628 31 2 0 176 1 9 145 8 0 4 12 0 139 9 8 12 5 0 24 1 0 7 1 0 11 7 3 9 2 0 52 2 1 15 1 0 45 1 0 9 30 18 18 13 10 10 2 0 23 2 1 21 1 0 13 1 0 16 chain 7403 chr3 198295559 + 79502691 79502845 LTR12C 1709 + 932 1086 76383 34 0 41 61 46 5 13 chain 2412 chr3 198295559 + 79502888 79502916 LTR12C 1709 + 1010 1038 104101 28 chain 23070 chr3 198295559 + 79507984 79508261 L1PA6 6164 + 5885 6162 52256 277 chain 31856 chr3 198295559 + 79560172 79560534 L1PA3long 6157 + 5786 6155 40453 228 0 1 84 5 11 45 chain 36270 chr3 198295559 + 79611462 79611886 L1PA7 6471 + 6035 6458 37226 286 1 0 137 chain 388304 chr3 198295559 + 79623181 79628594 L1PA8A 6298 + 1156 6291 5344 301 0 3 166 1 0 47 1 0 4 1 2 487 0 3 5 7 4 249 15 13 68 0 2 881 2 1 13 20 12 58 2 0 5 0 2 8 1 2 386 0 1 21 0 1 67 0 1 31 0 13 131 306 0 300 21 19 213 14 18 91 1 0 40 8 7 376 1 2 5 1 0 98 0 1 175 0 3 53 0 3 85 13 23 295 20 21 319 chain 13212 chr3 198295559 + 79641414 79641556 L1PA2 6032 + 5886 6028 64760 142 chain 228915 chr3 198295559 + 79685745 79688368 L1PA4 6152 + 3512 6141 8779 166 1 0 209 0 2 462 0 4 416 0 1 279 11 5 244 1 5 494 0 1 238 0 1 102 chain 24648 chr3 198295559 + 79706507 79706849 THE1B 368 + 1 356 49794 40 5 24 104 8 3 4 1 0 180 chain 58732 chr3 198295559 + 79714080 79714745 L1PA4 6152 + 5223 5887 26756 155 1 0 509 chain 33378 chr3 198295559 + 79772861 79773326 LTR2 463 + 0 463 39191 73 1 0 286 21 22 30 1 0 22 7 6 24 chain 457606 chr3 198295559 + 79774105 79780516 HERVE_a-int 7009 + 135 7006 4194 21 3 0 29 3 1 73 2 0 6 5 3 22 1 0 4 1 0 7 10 8 14 41 32 5 1 0 18 28 0 35 4 2 24 1 0 44 1 0 21 1 0 54 1 0 34 1 0 98 1 0 12 1 0 10 7 6 34 1 0 9 1 0 38 1 0 17 2 0 27 1 0 67 1 0 26 1 0 8 1 0 73 1 9 25 2 1 36 2 0 16 1 0 51 2 1 21 1 0 15 8 6 12 4 0 19 2 1 6 1 0 15 1 0 22 11 6 7 1 0 10 1 0 5 1 0 5 1 0 51 9 7 50 7 6 23 1 0 16 2 1 114 22 25 14 1 0 11 1 0 17 1 0 13 1 0 3 1 0 18 10 9 34 1 0 37 2 1 19 1 0 4 7 4 35 1 0 36 2 1 4 1 0 36 2 1 44 1 0 23 2 1 16 2 1 23 2 1 10 1 0 95 2 1 25 6 4 29 14 65 116 2 1 14 1 0 38 1 0 167 2 1 106 1 2 51 0 13 233 1 0 90 2 0 93 0 1 318 0 571 61 0 1 366 0 1 44 0 1 790 9 0 112 1 0 28 1 0 9 2 1 73 1 0 6 2 1 41 1 0 24 1 0 86 1 0 12 1 0 216 3 4 38 2 0 102 1 0 15 1 0 3 1 0 57 2 0 20 1 0 12 2 1 76 5 3 138 1 0 43 1 0 31 1 0 10 1 0 16 17 13 36 2 1 20 1 0 47 1 0 3 1 0 28 7 5 45 11 17 29 3 0 54 3 1 26 1 0 31 1 0 6 3 1 13 1 0 26 4 2 30 53 43 23 2 0 4 1 0 11 chain 36011 chr3 198295559 + 79780525 79780980 LTR2 463 + 1 463 37406 372 1 10 28 1 0 28 1 0 24 chain 127411 chr3 198295559 + 79782948 79784402 L1PA3long 6157 + 3580 5036 14366 921 0 2 132 1 0 262 0 1 138 chain 167321 chr3 198295559 + 79832657 79834704 L1PA7 6471 + 4410 6469 11253 215 1 0 324 5 0 429 5 4 239 0 3 58 25 24 188 0 2 205 0 1 49 0 1 24 0 15 201 0 1 66 3 0 10 chain 9419 chr3 198295559 + 79841902 79842050 THE1D 372 + 224 372 71658 42 1 0 58 14 15 33 chain 10271 chr3 198295559 + 79905058 79905181 L1PA6 6164 + 5884 6007 69861 123 chain 4287 chr3 198295559 + 79960175 79960278 MER115 684 + 518 621 89590 27 0 1 8 37 36 31 chain 37563 chr3 198295559 + 79987250 79987665 L1PA5 6144 + 5539 5955 36358 175 0 1 240 chain 29540 chr3 198295559 + 80029528 80029878 L1PA7 6471 + 5064 5414 42560 350 chain 17589 chr3 198295559 + 80045431 80045677 L1P3 4156 + 3894 4139 59135 23 0 1 98 0 1 24 5 4 5 0 1 57 2 0 6 2 1 24 chain 47837 chr3 198295559 + 80070509 80071036 SVA_B 1603 + 1078 1603 30349 519 2 0 6 chain 7450 chr3 198295559 + 80114528 80114659 L1MC2 1988 + 232 359 76243 59 1 0 4 0 1 17 15 11 22 0 1 5 1 0 7 chain 336 chr3 198295559 + 80137393 80137458 L1PBa 3878 + 1652 1717 72810 65 chain 12697 chr3 198295559 + 80137853 80138075 L1PA14 3548 + 3275 3485 65622 57 1 0 8 5 1 16 0 4 17 4 2 18 1 0 17 1 0 40 6 0 10 1 0 20 chain 460 chr3 198295559 + 80139023 80139112 L1PBa 3878 + 1717 1811 72810 20 11 16 58 chain 65494 chr3 198295559 + 80197293 80198052 L1PA4 6152 + 4343 5100 25073 269 3 1 299 1 0 108 0 1 79 chain 8178 chr3 198295559 + 80241848 80241968 MER4A 717 + 1 122 74470 65 8 9 47 chain 35726 chr3 198295559 + 80308310 80309316 HERV30-int 1034 + 137 786 37586 10 24 0 11 7 1 41 1 0 56 20 0 5 13 0 51 5 0 41 23 11 68 1 0 89 15 0 42 160 69 15 2 0 13 34 0 9 61 17 49 39 0 24 51 0 7 0 1 19 chain 48815 chr3 198295559 + 80312033 80312729 LTR30 714 + 0 714 30010 185 0 1 4 1 0 53 6 11 189 7 18 170 32 35 26 2 1 21 chain 107903 chr3 198295559 + 80314320 80315701 LTR12C 1709 + 0 1709 17341 192 16 26 120 22 65 61 0 2 162 4 0 22 0 278 184 1 0 4 4 2 106 0 4 276 1 0 115 7 6 84 chain 170539 chr3 198295559 + 80386128 80388903 HERVH-int 3825 + 832 3825 11083 402 40 13 42 1 2 140 9 0 91 0 1 56 14 7 105 19 46 55 3 0 8 0 3 14 16 14 241 19 24 662 1 0 5 4 5 223 426 653 64 4 6 111 chain 61466 chr3 198295559 + 80419852 80420530 L1PA4 6152 + 5473 6152 25994 670 0 1 8 chain 15741 chr3 198295559 + 80570459 80570816 THE1C 375 + 0 375 61363 22 2 3 4 1 0 58 25 42 13 16 16 21 67 79 85 11 0 32 chain 303388 chr3 198295559 + 80596049 80599727 L1PA7 6471 + 2777 6458 6758 707 1 2 10 2 1 52 7 11 1919 0 2 145 4 0 616 0 1 174 1 10 8 9 0 23 chain 27010 chr3 198295559 + 80615793 80616112 L1PA7 6471 + 5879 6198 46256 319 chain 8366 chr3 198295559 + 80616131 80616231 L1PA7 6471 + 6198 6298 73979 100 chain 14056 chr3 198295559 + 80616247 80616416 L1PA7 6471 + 6298 6467 63509 169 chain 24939 chr3 198295559 + 80652535 80652883 THE1A 353 + 0 353 49369 109 33 38 206 chain 23794 chr3 198295559 + 80654447 80654782 THE1A 353 + 0 333 51119 107 28 27 115 1 0 84 chain 25602 chr3 198295559 + 80661339 80661712 L1PB2 3958 + 3462 3830 48312 78 1 0 77 25 24 114 2 0 20 1 0 55 chain 511003 chr3 198295559 + 80709137 80715895 L1PA7 6471 + 7 6467 2716 207 1 0 428 10 9 199 0 1 359 0 4 21 25 0 11 0 25 33 0 3 416 0 1 493 0 3 362 8 5 49 5 7 119 0 2 412 0 1 29 11 15 263 6 2 324 1 0 26 5 3 341 1 0 4 1 3 87 0 2 83 0 1 197 328 10 388 1 0 166 0 1 253 0 1 21 2 3 30 0 1 186 1 4 23 9 8 484 0 1 178 0 1 151 chain 12279 chr3 198295559 + 80793402 80793634 L1PB4 2604 + 2139 2363 66316 49 65 57 118 chain 49045 chr3 198295559 + 80832965 80834126 MER4D0 881 + 52 876 29935 60 3 12 33 1 10 65 363 0 128 1 0 6 9 2 71 0 1 89 1 0 17 5 17 21 84 88 204 chain 96923 chr3 198295559 + 80837007 80838069 L1PA3long 6157 + 5090 6152 18662 1062 chain 3617 chr3 198295559 + 80847671 80847714 L1PB 1623 + 1012 1055 94295 43 chain 69834 chr3 198295559 + 80867792 80868569 L1PA5 6144 + 5367 6144 24036 777 chain 389951 chr3 198295559 + 80905086 80911128 L1PA7 6471 + 5 6464 5326 78 5 4 156 0 1 8 32 39 121 0 22 38 2 1 98 3 0 105 8 9 36 24 36 24 0 1 64 1 2 5 1 0 32 0 214 6 4 0 104 0 4 36 5 24 138 7 8 137 1 2 305 0 1 307 838 934 339 0 7 52 1 0 20 0 1 41 9 14 14 15 14 604 0 1 310 0 2 54 0 1 222 1 12 114 21 22 171 0 1 247 3 0 200 0 9 46 0 7 70 0 2 91 0 2 146 1 2 521 chain 68180 chr3 198295559 + 80906977 80907756 L1PA5 6144 + 5350 6129 24261 322 0 1 131 1 0 325 chain 15006 chr3 198295559 + 80920589 80920862 THE1D 372 + 2 372 62265 49 3 0 10 1 0 5 34 37 26 4 0 6 10 112 125 chain 43640 chr3 198295559 + 80928860 80929373 MER9a2 513 + 0 513 32362 513 chain 27358 chr3 198295559 + 80932251 80932582 L1P3 4156 + 3811 4139 45751 296 2 0 7 2 1 24 chain 157582 chr3 198295559 + 80965308 80967059 L1PA3long 6157 + 4404 6157 11907 978 1 2 623 0 1 149 chain 66673 chr3 198295559 + 81010920 81011727 L1P1 4361 + 1 826 24779 121 0 14 342 0 1 39 0 3 305 chain 7891 chr3 198295559 + 81069032 81069186 LTR19-int 1103 + 96 210 75146 28 17 0 7 1 0 17 1 0 5 20 0 50 1 0 7 chain 9228 chr3 198295559 + 81107387 81107526 L1PA8 5853 + 5717 5853 72056 23 2 1 19 1 0 87 1 0 6 chain 9767 chr3 198295559 + 81107541 81107682 THE1B 368 + 222 368 70894 89 12 17 40 chain 10207 chr3 198295559 + 81117961 81118082 L1PA5 6144 + 6023 6144 69998 121 chain 54399 chr3 198295559 + 81180687 81181393 LTR12_ 688 + 0 688 28085 78 25 0 435 1 0 39 0 8 128 chain 15000 chr3 198295559 + 81181598 81181783 LTR12 884 + 243 451 62271 97 1 2 36 0 22 51 chain 4250 chr3 198295559 + 81271791 81271839 U5 65 + 0 48 89823 48 chain 40435 chr3 198295559 + 81286296 81286830 MER41A 554 + 19 554 34357 68 1 5 47 2 1 210 2 0 204 chain 3380 chr3 198295559 + 81296345 81296387 LTR33C 613 + 532 574 96302 42 chain 27594 chr3 198295559 + 81352347 81352729 MLT2A1 477 + 0 394 45461 33 0 5 45 12 15 40 0 1 30 1 5 210 1 0 10 chain 36895 chr3 198295559 + 81400783 81401190 L1PA4 6152 + 5736 6143 36820 407 chain 52934 chr3 198295559 + 81430929 81431573 L1PA8A 6298 + 5581 6226 28597 541 6 7 54 0 1 7 4 3 32 chain 16988 chr3 198295559 + 81488128 81488333 L1PA3long 6157 + 4377 4567 59822 74 15 0 116 chain 4599 chr3 198295559 + 81509479 81509529 U2 167 + 0 50 87799 50 chain 5936 chr3 198295559 + 81510646 81510729 L1PB1 5432 + 5346 5427 81333 25 0 2 18 1 0 13 1 0 18 2 0 5 chain 95927 chr3 198295559 + 81526482 81527569 L1PA4 6152 + 4250 5343 18780 57 0 1 157 0 1 832 0 4 41 chain 44185 chr3 198295559 + 81546392 81546933 MER41A 554 + 13 554 32020 79 0 1 270 1 0 191 chain 41395 chr3 198295559 + 81550475 81551026 MER41A 554 + 0 554 33737 89 3 4 25 9 10 371 2 3 52 chain 34243 chr3 198295559 + 81632304 81632720 L1PA7 6471 + 5557 5977 38529 64 1 0 76 5 6 117 0 1 69 0 3 84 chain 34704 chr3 198295559 + 81667889 81668324 L1PA8A 6298 + 5849 6291 38219 286 8 14 41 0 1 100 chain 15502 chr3 198295559 + 81675969 81676202 Tigger2 2703 + 2414 2649 61650 134 26 28 73 chain 106447 chr3 198295559 + 81711603 81712799 L1PA5 6144 + 4930 6135 17500 34 0 1 332 0 4 368 0 2 45 0 2 417 chain 43442 chr3 198295559 + 81720740 81721198 L1HS 6032 + 5558 6016 32480 458 chain 31192 chr3 198295559 + 81747552 81747984 LTR7 482 + 0 482 40980 138 21 28 45 8 50 44 0 1 176 chain 23816 chr3 198295559 + 81758841 81759185 THE1B 368 + 0 368 51074 40 0 15 117 1 0 26 35 45 125 chain 28534 chr3 198295559 + 81768660 81768977 AluYb8 318 + 1 313 44067 300 5 0 12 chain 29231 chr3 198295559 + 81858356 81858666 AluYa5 310 + 0 309 42996 132 1 0 177 chain 543416 chr3 198295559 + 81878123 81884270 L1PA4 6152 + 0 6143 1114 270 1 0 310 1 0 3109 1 0 2066 2 0 62 1 2 324 chain 247920 chr3 198295559 + 81987743 81991353 MER61-int 3695 + 97 3695 8289 101 39 0 72 3 2 30 0 1 4 1 0 97 0 4 234 2 0 229 1 2 26 0 1 4 6 5 23 18 2 116 0 39 73 0 4 73 4 3 27 59 33 72 1 5 15 1 3 102 0 5 102 0 4 126 0 3 176 2 10 20 0 2 69 8 0 120 1 0 49 0 3 24 0 1 396 2 0 41 8 7 70 6 16 22 1 0 15 5 18 55 25 24 132 0 1 134 0 1 5 3 1 11 0 1 186 28 6 152 0 4 84 53 54 46 chain 9176 chr3 198295559 + 82015751 82015896 MSTB-int 1649 + 1492 1635 72175 24 1 3 14 7 6 91 3 0 5 chain 32408 chr3 198295559 + 82040380 82040776 L1PA7 6471 + 6071 6468 40037 142 1 0 66 0 1 31 4 5 152 chain 117226 chr3 198295559 + 82117436 82119058 L1PA7 6471 + 4954 6470 16014 56 14 20 563 19 0 23 73 9 8 0 1 47 0 4 10 51 6 92 0 1 124 13 15 325 0 9 185 1 0 18 chain 3811 chr3 198295559 + 82154758 82154798 L1P1 4361 + 3546 3586 92768 40 chain 29962 chr3 198295559 + 82301294 82301617 L1PA3long 6157 + 4007 4330 42089 323 chain 39815 chr3 198295559 + 82321633 82322130 MER9a3 513 + 15 513 34805 95 0 1 145 9 8 170 0 1 78 chain 59749 chr3 198295559 + 82323677 82324485 MER4E1 777 + 0 770 26446 247 1 0 271 65 33 152 11 6 61 chain 179472 chr3 198295559 + 82337499 82339442 L1HS 6032 + 0 1943 10612 1943 chain 260399 chr3 198295559 + 82399772 82402670 L1PA4 6152 + 2451 5353 7961 379 0 4 2519 chain 5628 chr3 198295559 + 82533169 82533237 L1PREC2 3366 + 2468 2536 82670 68 chain 6699 chr3 198295559 + 82574791 82574869 LTR12F 595 + 402 480 78643 78 chain 153511 chr3 198295559 + 82583834 82585706 SVA_D 2077 + 6 2077 12147 10 6 0 171 0 1 13 1 0 4 0 1 221 0 1 112 0 40 336 2 1 20 0 38 17 0 1 4 0 1 34 1 4 12 0 1 22 4 4 17 0 1 7 0 79 38 0 1 6 0 1 32 13 42 5 0 2 40 0 1 4 5 6 25 0 8 11 6 0 44 5 8 624 chain 24722 chr3 198295559 + 82592581 82593061 MER49 923 + 0 494 49691 26 65 84 82 27 29 45 23 19 122 9 6 81 chain 32906 chr3 198295559 + 82644941 82645414 MER52-int 3354 + 2293 2750 39582 76 4 5 50 1 0 28 0 4 202 35 15 77 chain 107409 chr3 198295559 + 82715155 82716577 LTR12C 1709 + 0 1709 17395 41 11 1 19 4 22 213 0 2 166 7 9 97 14 10 70 0 278 184 1 0 4 4 2 106 0 4 71 0 2 112 1 0 206 37 36 54 chain 7316 chr3 198295559 + 82743845 82743944 L1PA15 4387 + 579 688 76615 85 0 10 14 chain 19781 chr3 198295559 + 82761229 82761482 HERVL-int 5654 + 4543 4801 56699 88 1 0 138 0 6 26 chain 5345 chr3 198295559 + 82786356 82786523 L1MC4 1079 + 594 760 83975 16 34 35 33 41 39 43 chain 288223 chr3 198295559 + 82843246 82846815 L1PA7 6471 + 2870 6468 7190 294 8 16 230 0 1 92 0 1 102 2 0 55 5 26 4 0 1 143 0 1 140 2 3 968 0 1 7 3 1 664 2 1 516 1 0 331 chain 76743 chr3 198295559 + 82866799 82867625 L1PA2 6032 + 5206 6032 22386 826 chain 24892 chr3 198295559 + 82887506 82887773 L1HS 6032 + 5765 6032 49451 267 chain 133098 chr3 198295559 + 82902682 82907897 L1PA5 6144 + 4188 5877 13734 706 3590 69 8 6 0 43 0 1 862 chain 45265 chr3 198295559 + 82914253 82914769 L1PA3long 6157 + 5642 6157 31439 15 8 7 493 chain 38925 chr3 198295559 + 82969190 82969635 L1PA5 6144 + 5699 6143 35412 333 1 0 111 chain 133312 chr3 198295559 + 82996404 82998072 L1PA7 6471 + 4780 6452 13714 169 2 0 382 10 11 183 20 21 76 0 6 333 1 0 425 1 0 66 chain 94410 chr3 198295559 + 83038407 83039413 L1HS 6032 + 4405 5411 18980 1006 chain 59684 chr3 198295559 + 83066931 83067664 L1PA7 6471 + 5452 6182 26463 162 0 2 70 8 1 22 0 1 162 0 1 309 chain 382059 chr3 198295559 + 83107698 83112599 L1PA7 6471 + 1536 6465 5447 269 3 18 23 6 7 614 10 11 159 1 3 25 0 1 10 0 1 409 1 2 4 1 0 29 1 0 91 2 1 245 0 3 5 3 0 18 1 2 5 1 0 12 2 0 92 13 11 403 2 1 568 24 0 182 0 1 326 0 22 333 0 1 175 1 3 77 0 2 45 3 9 91 0 1 13 0 3 331 0 2 113 17 18 133 3 0 6 chain 25209 chr3 198295559 + 83288121 83288466 MER4A1 472 + 123 472 48931 88 22 25 4 0 1 231 chain 192332 chr3 198295559 + 83290087 83292395 L1PA6 6164 + 3835 6160 10007 292 0 2 374 1 0 35 3 4 584 1 2 707 0 1 24 0 10 132 14 17 141 chain 27052 chr3 198295559 + 83312957 83313320 L1PB1 5432 + 4739 5103 46197 63 12 13 288 chain 47354 chr3 198295559 + 83326785 83327731 L1PA8 5853 + 5191 5853 30521 287 305 0 43 1 0 43 1 0 45 7 9 61 1 0 61 2 1 10 20 43 59 chain 28222 chr3 198295559 + 83327863 83328166 AluYk12 309 + 0 303 44531 303 chain 65534 chr3 198295559 + 83341360 83342099 L1PA5 6144 + 4235 4974 25064 739 chain 41555 chr3 198295559 + 83361430 83361943 MER9a3 513 + 0 513 33650 13 1 0 85 12 13 402 chain 55542 chr3 198295559 + 83471484 83472105 L1PA4 6152 + 5522 6143 27705 621 chain 122544 chr3 198295559 + 83474452 83475820 L1PA4 6152 + 4128 5519 15107 1288 0 23 80 chain 60751 chr3 198295559 + 83514917 83515691 LTR17 781 + 0 773 26165 243 8 16 68 1 0 71 3 0 134 2 3 174 0 16 7 22 0 41 chain 61034 chr3 198295559 + 83536716 83537412 L1PA4 6152 + 4634 5332 26094 242 0 1 368 0 1 86 chain 14849 chr3 198295559 + 83573123 83573473 L1PB1 5432 + 5114 5423 62455 24 1 0 5 16 5 10 16 10 11 0 1 39 1 0 18 1 0 44 39 26 20 16 13 6 2 0 24 1 0 22 1 0 9 1 0 14 1 0 8 chain 66730 chr3 198295559 + 83607857 83608595 L1PA3long 6157 + 5418 6157 24762 515 0 1 223 chain 4037 chr3 198295559 + 83616279 83616326 MADE1 96 + 49 96 91169 47 chain 58586 chr3 198295559 + 83623993 83624715 L1PA6 6164 + 5437 6161 26793 74 9 12 416 2 1 4 0 1 206 1 0 10 chain 79147 chr3 198295559 + 83639717 83640695 L1P3 4156 + 3161 4137 21823 572 0 1 373 2 0 7 2 1 22 chain 74295 chr3 198295559 + 83678872 83679837 L1PA10 4194 + 3184 4161 23003 18 4 7 207 0 13 687 3 0 34 1 0 11 chain 94345 chr3 198295559 + 83690150 83691386 L1PA7 6471 + 5158 6424 18991 28 22 26 53 12 15 51 0 14 273 1 6 169 1 0 77 0 1 223 0 1 188 0 3 138 chain 48509 chr3 198295559 + 83702489 83703124 L1PA7 6471 + 3568 4204 30116 83 0 8 267 0 1 71 0 2 10 1 0 7 0 1 153 19 9 24 chain 61757 chr3 198295559 + 83708078 83708913 L1PA8A 6298 + 4268 5110 25926 49 0 1 109 21 29 93 1 2 50 2 0 306 8 7 196 chain 9406 chr3 198295559 + 83726833 83727146 MER52-int 3354 + 149 444 71689 28 1 0 29 124 114 16 1 0 19 13 12 17 6 5 26 3 0 20 1 0 9 chain 68202 chr3 198295559 + 83747637 83748419 L1PA4 6152 + 4543 5351 24403 636 0 26 40 0 1 55 1 0 50 chain 3492 chr3 198295559 + 83770746 83770825 MER52C 1267 + 882 958 95309 38 10 0 7 8 15 16 chain 62565 chr3 198295559 + 83773716 83774540 L1PA8 5853 + 5027 5853 25739 60 2 0 353 0 11 113 1 0 44 2 0 71 1 0 6 16 15 40 2 1 14 6 5 93 chain 15447 chr3 198295559 + 83893277 83893482 L1PA6 6164 + 5956 6161 61727 55 0 7 9 7 0 134 chain 81017 chr3 198295559 + 83961556 83962548 L1PA7 6471 + 5476 6470 21434 145 2 0 58 0 1 30 1 0 527 0 4 229 chain 41973 chr3 198295559 + 83964621 83973667 L1PA3long 6157 + 5109 6157 33370 281 7991 0 629 7 0 138 chain 10337 chr3 198295559 + 83970446 83970569 MER57-int 2662 + 1029 1152 69721 123 chain 28286 chr3 198295559 + 83971611 83972162 MER51B 395 + 0 395 44439 35 1 0 193 179 24 143 chain 3085 chr3 198295559 + 83971857 83971892 MER51B 395 + 254 289 98931 35 chain 287138 chr3 198295559 + 84010348 84013755 L1PA5 6144 + 2727 6138 7222 11 0 1 431 0 1 1173 0 4 520 1 2 299 1 2 123 1 0 405 3 0 290 1 2 135 1 0 12 chain 13075 chr3 198295559 + 84033976 84034149 L1PA13 3608 + 218 389 64975 73 2 0 98 chain 341050 chr3 198295559 + 84086620 84090933 L1P1 4361 + 7 4320 6050 212 30 0 750 1 2 896 0 13 315 0 2 933 0 13 24 0 1 28 1 2 953 1 0 154 1 0 9 0 1 5 chain 20092 chr3 198295559 + 84232313 84232535 L1PA3long 6157 + 3856 4078 56266 222 chain 57157 chr3 198295559 + 84401284 84401927 L1PA5 6144 + 5484 6128 27208 74 0 1 569 chain 66489 chr3 198295559 + 84420861 84422147 L1PA3long 6157 + 4875 6157 24828 336 8 0 93 0 4 849 chain 43543 chr3 198295559 + 84438761 84439252 L1PA4 6152 + 5661 6151 32421 237 2 1 252 chain 141833 chr3 198295559 + 84456257 84458131 L1PA8 5853 + 3973 5853 12954 62 11 13 160 9 12 114 1 0 262 4 8 58 1 2 160 1 2 181 0 2 73 0 2 428 4 3 47 1 0 20 0 4 23 2 0 62 9 8 11 1 0 40 4 0 10 2 1 19 1 0 93 chain 426123 chr3 198295559 + 84466099 84471771 HERVL-int 5654 + 0 5646 4797 218 10 13 110 0 1 65 0 1 235 8 6 362 32 15 45 0 1 46 1 0 524 9 13 39 2 1 4 0 1 214 5 6 4 1 0 14 1 0 4 0 1 20 0 1 161 0 1 192 0 4 43 2 0 24 0 2 19 49 0 144 0 10 114 0 1 90 0 1 433 0 1 25 7 10 919 0 1 157 23 22 876 0 5 7 19 0 63 0 3 92 26 47 4 0 1 210 chain 100023 chr3 198295559 + 84493157 84494355 L1PA7 6471 + 5265 6470 18299 351 1 4 160 3 7 683 chain 63673 chr3 198295559 + 84524278 84524985 L1PA3long 6157 + 5442 6149 25484 707 chain 7079 chr3 198295559 + 84635339 84635547 MER30 238 + 0 238 77334 16 110 140 82 chain 14759 chr3 198295559 + 84650274 84650431 L1PA2 6032 + 5875 6032 62588 157 chain 26289 chr3 198295559 + 84653507 84653790 L1PA2 6032 + 5748 6031 47286 283 chain 15666 chr3 198295559 + 84703074 84703310 L1PA13 3608 + 3266 3491 61444 7 2 0 62 1 0 57 8 5 48 2 0 3 2 0 18 1 0 25 chain 187659 chr3 198295559 + 84710882 84713527 L1PB1 5432 + 2788 5409 10228 52 1 2 669 1 2 39 6 6 148 0 1 18 13 7 173 5 0 6 3 8 43 0 1 264 0 1 380 0 2 18 3 0 475 2 16 12 4 3 16 8 0 8 16 10 45 9 8 16 5 4 27 1 2 10 1 0 16 15 0 7 1 5 19 7 4 15 6 4 23 1 0 18 1 0 13 1 0 5 chain 90606 chr3 198295559 + 84734954 84735964 L1PA3long 6157 + 5142 6155 19575 210 0 1 179 0 1 306 0 1 315 chain 18708 chr3 198295559 + 84746955 84747150 AluYb9 318 + 120 315 57889 195 chain 516482 chr3 198295559 + 84760712 84767154 L1PA7 6471 + 0 6465 2446 86 0 1 1355 0 4 598 4 3 584 2 1 62 3 1 520 0 1 230 0 4 34 1 2 158 2 0 85 7 5 89 7 6 51 0 1 119 3 0 671 0 4 154 0 1 153 1 2 228 0 9 73 1 3 323 1 0 56 13 20 768 chain 42431 chr3 198295559 + 84777865 84778368 L1PA5 6144 + 5636 6137 33108 336 2 0 9 1 6 5 5 0 145 chain 14930 chr3 198295559 + 84791791 84792010 L1MA3 4352 + 76 295 62350 14 0 3 30 0 1 12 0 1 10 0 1 7 1 0 20 1 0 3 4 0 117 chain 69965 chr3 198295559 + 84792729 84793819 MER11B 1079 + 0 1079 24003 457 18 17 22 35 23 4 0 1 12 6 8 168 4 8 18 64 58 21 14 15 40 0 1 171 7 6 29 chain 33773 chr3 198295559 + 84818901 84819284 L1PA4 6152 + 5768 6151 38871 383 chain 493919 chr3 198295559 + 84884979 84891134 L1PA6 6164 + 0 6156 3310 161 1 17 58 0 2 222 4 5 43 12 14 33 11 12 321 15 0 80 24 17 38 1 0 429 0 1 156 15 5 70 0 2 230 0 1 265 1 0 150 0 2 849 1 2 11 0 1 92 0 1 267 0 1 144 0 1 476 0 1 143 0 1 968 10 8 307 0 6 10 7 1 35 6 8 489 chain 27102 chr3 198295559 + 84911101 84911414 L1PA4 6152 + 5835 6148 46123 313 chain 96870 chr3 198295559 + 84918410 84919532 SVA_C 1631 + 331 1628 18670 288 0 3 175 0 174 31 1 0 608 1 0 18 chain 8533 chr3 198295559 + 84925058 84925263 L1MA7 2200 + 1825 2003 73615 4 1 0 18 20 24 72 11 0 34 33 14 12 chain 9316 chr3 198295559 + 84950686 84950835 L1MA1 4479 + 3914 4058 71875 7 0 7 5 3 0 10 5 0 3 1 0 6 3 0 106 chain 9014 chr3 198295559 + 85014332 85014524 MER44A 345 + 149 297 72530 72 65 21 55 chain 84533 chr3 198295559 + 85105140 85106090 L1PA3long 6157 + 5191 6143 20707 341 0 2 609 chain 10139 chr3 198295559 + 85119869 85119997 L1PA7 6471 + 5493 5621 70126 128 chain 64867 chr3 198295559 + 85119998 85120796 L1PA7 6471 + 5621 6429 25223 81 0 1 90 0 1 44 0 2 219 5 12 68 1 0 290 chain 2813 chr3 198295559 + 85120796 85120829 L1PA7 6471 + 6436 6469 101591 33 chain 511337 chr3 198295559 + 85153073 85158850 L1PA3long 6157 + 0 6156 2695 152 0 1 263 4 1 359 0 128 2145 33 0 439 2 1 169 0 287 1878 0 1 68 1 0 264 chain 2774 chr3 198295559 + 85156000 85156029 L1PA3long 6157 - 1989 2018 100232 29 chain 30588 chr3 198295559 + 85246103 85246448 L1PA5 6144 + 5791 6136 41475 345 chain 542672 chr3 198295559 + 85289930 85295940 L1PA2 6032 + 3 6032 1165 251 0 2 485 0 1 2385 1 3 2565 0 1 88 0 13 235 chain 6779 chr3 198295559 + 85418222 85418316 L1MC2 1988 + 1771 1861 78385 76 4 0 14 chain 27708 chr3 198295559 + 85467891 85468181 AluYa5 310 + 19 309 45303 290 chain 10584 chr3 198295559 + 85489548 85489666 L1PA2 6032 + 5914 6032 69258 118 chain 15200 chr3 198295559 + 85524973 85525168 L1PA7 6471 + 6277 6470 62043 188 2 0 5 chain 28998 chr3 198295559 + 85668424 85668795 THE1B 368 + 0 368 43321 172 2 1 20 2 0 175 chain 34279 chr3 198295559 + 85686641 85687088 MER4A1 472 + 0 472 38507 15 0 2 82 0 2 125 5 26 220 chain 41489 chr3 198295559 + 85699946 85700442 L1PA7 6471 + 5921 6417 33679 496 chain 27746 chr3 198295559 + 85814391 85814738 L1P1 4361 + 3002 3350 45255 157 0 1 190 chain 40104 chr3 198295559 + 85814930 85815432 L1P3 4156 + 3639 4139 34590 182 6 7 279 2 0 7 2 1 24 chain 43674 chr3 198295559 + 85854245 85854781 L1PA7 6471 + 5926 6461 32333 462 11 10 63 chain 104760 chr3 198295559 + 85893320 85894494 L1PA4 6152 + 4964 6139 17721 1008 0 1 166 chain 213877 chr3 198295559 + 85942229 85946284 L1P2 5180 + 1955 4500 9207 78 1506 0 280 17 18 541 4 0 121 1 0 1507 chain 20327 chr3 198295559 + 85943589 85943813 L1PA2 6032 + 4558 4782 55775 224 chain 79169 chr3 198295559 + 85957841 85958936 L1PA8A 6298 + 5220 6218 21814 28 0 9 97 4 0 131 1 0 4 0 3 6 3 0 292 101 0 428 chain 100299 chr3 198295559 + 86019895 86020992 L1PA2 6032 + 2920 4021 18265 146 0 4 951 chain 446643 chr3 198295559 + 86039081 86044256 L1PA4 6152 + 0 5185 4445 226 16 0 1222 0 1 248 0 1 880 0 1 82 0 1 106 0 2 1574 6 14 131 0 12 684 chain 5241 chr3 198295559 + 86091169 86091268 THE1D 372 + 105 206 84496 60 26 28 13 chain 524127 chr3 198295559 + 86092971 86099092 L1PA5 6144 + 0 6140 2084 1154 0 3 280 0 1 755 0 2 119 1 2 664 0 1 182 0 1 38 1 0 93 0 1 446 0 1 165 0 1 313 3 1 126 0 4 632 0 1 311 0 4 500 4 5 334 chain 63217 chr3 198295559 + 86187157 86187936 L1PA7 6471 + 5681 6470 25578 39 1 8 48 0 4 6 6 1 445 0 3 78 2 3 154 chain 43700 chr3 198295559 + 86201209 86201728 L1PA7 6471 + 5945 6464 32321 114 0 1 251 1 0 153 chain 23843 chr3 198295559 + 86206154 86206443 L1PA5 6144 + 5831 6120 51033 52 0 2 61 1 0 54 1 0 120 chain 14988 chr3 198295559 + 86282696 86282955 LTR12C 1709 + 932 1197 62281 68 0 1 107 65 70 19 chain 20839 chr3 198295559 + 86290127 86290371 L1PA2 6032 + 5787 6029 55315 234 2 0 8 chain 531185 chr3 198295559 + 86297030 86303164 L1PA5 6144 + 3 6128 1783 116 15 1 1046 7 8 597 0 1 684 0 1 508 0 1 1264 0 1 397 1 0 31 0 2 573 0 1 345 1 0 305 1 0 243 chain 27552 chr3 198295559 + 86386891 86387281 LTR7 482 + 0 476 45507 101 15 14 17 0 51 41 5 37 44 0 1 14 0 2 43 1 2 109 chain 4638 chr3 198295559 + 86412872 86413016 L1MB8 1703 + 1437 1592 87603 29 66 77 49 chain 120713 chr3 198295559 + 86445513 86447201 HERVL-int 5654 + 2 1650 15399 226 1 2 10 0 35 663 109 24 31 10 18 58 1 0 4 14 15 400 0 1 161 chain 37484 chr3 198295559 + 86474820 86475254 L1PA6 6164 + 5719 6162 36411 387 0 9 47 chain 10528 chr3 198295559 + 86504315 86504466 L1PA8 5853 + 5700 5841 69365 23 0 1 18 1 0 18 11 1 80 chain 214210 chr3 198295559 + 86582398 86585426 L1P2 5180 + 1731 4444 9198 124 2 1 6 0 1 272 0 1 183 12 0 66 2 1 161 314 0 9 0 1 92 1 2 508 0 1 23 1 0 32 5 2 126 11 20 158 0 1 50 5 0 304 0 2 291 0 5 270 chain 54764 chr3 198295559 + 86639374 86640058 L1PA10 4194 + 1907 2610 27955 271 0 13 124 2 8 287 chain 12842 chr3 198295559 + 86672245 86672411 LOR1b 457 + 246 445 65374 109 0 32 53 0 1 4 chain 114789 chr3 198295559 + 86757410 86758841 LTR12C 1709 + 0 1709 16415 288 4 0 85 6 2 153 15 17 106 0 278 183 1 0 5 3 1 97 9 13 173 0 1 108 1 5 194 chain 3476 chr3 198295559 + 86885283 86885326 L1PB1 5432 + 5353 5395 95399 38 1 0 4 chain 25982 chr3 198295559 + 86886580 86886944 L1PA8 5853 + 5478 5848 47741 86 1 0 42 7 6 29 0 3 34 2 1 11 1 0 50 2 1 19 1 0 52 0 9 27 chain 527953 chr3 198295559 + 87017114 87023221 L1PA4 6152 + 0 6144 1918 616 0 7 613 2 0 354 3 0 12 0 1 238 0 4 467 1 2 16 4 3 223 0 1 67 1 12 467 0 6 184 0 9 467 1 0 585 0 4 1026 0 1 432 1 2 79 1 0 105 1 0 141 chain 21777 chr3 198295559 + 87079276 87079519 AluYb8 318 + 73 314 54124 50 2 0 191 chain 4427 chr3 198295559 + 87085138 87085319 MLT1D 503 + 413 484 88753 10 1 0 4 111 0 32 0 2 23 chain 2702 chr3 198295559 + 87091889 87091918 Cheshire 1285 + 484 513 102344 29 chain 22547 chr3 198295559 + 87098967 87099243 AluY 311 + 29 305 53047 14 2 1 88 0 1 172 chain 3822 chr3 198295559 + 87105626 87105672 L1ME1 1623 + 1223 1270 92701 39 0 1 7 chain 14674 chr3 198295559 + 87141102 87141428 MER61A 341 + 0 341 62706 48 44 59 47 40 42 24 1 0 74 18 17 30 chain 262689 chr3 198295559 + 87142119 87145794 MER61-int 3695 + 1 3682 7892 27 8 6 16 4 3 25 0 4 27 1 6 155 11 10 46 9 6 52 0 10 16 1 2 61 1 0 64 7 6 106 6 5 59 0 3 231 2 0 6 0 1 52 0 7 11 5 0 76 0 1 25 0 1 88 0 3 164 0 1 12 1 5 24 0 1 16 8 9 91 2 0 159 0 1 89 0 1 61 0 1 270 10 9 51 12 14 223 0 1 193 13 1 117 34 33 88 13 12 33 1 2 91 8 7 153 7 0 193 1 0 10 2 0 73 3 5 6 1 0 244 chain 12848 chr3 198295559 + 87147446 87147775 MER51A 677 + 0 189 65359 30 12 13 97 110 0 37 31 0 12 chain 22874 chr3 198295559 + 87157220 87157592 MLT2A1 477 + 0 382 52544 73 0 9 32 0 1 42 0 3 10 4 1 10 0 1 56 66 65 79 chain 12736 chr3 198295559 + 87265586 87265870 MER2 342 + 14 316 65550 27 4 0 6 72 88 74 7 12 74 2 3 18 chain 37706 chr3 198295559 + 87280179 87280657 L1PA7 6471 + 5991 6466 36270 192 1 0 125 7 8 143 3 0 7 chain 55024 chr3 198295559 + 87294408 87295374 L1PB1 5432 + 4566 5413 27870 60 3 0 118 10 11 219 1 0 56 0 1 72 97 11 24 1 0 6 19 14 9 2 0 52 1 0 18 1 0 39 72 56 14 2 0 24 1 0 21 1 0 13 1 0 9 chain 31061 chr3 198295559 + 87303634 87304068 L1PA8 5853 + 5435 5853 41081 123 0 2 4 1 0 46 2 0 69 11 9 21 11 0 31 2 1 19 2 1 92 chain 15232 chr3 198295559 + 87337380 87337554 L1PA4 6152 + 5182 5356 61996 174 chain 6350 chr3 198295559 + 87337554 87337625 L1PA4 6152 + 5359 5430 79837 71 chain 63147 chr3 198295559 + 87337626 87338336 L1PA4 6152 + 5430 6141 25591 608 0 1 102 chain 4075 chr3 198295559 + 87375770 87375834 LTR12C 1709 + 773 918 90927 42 1 82 21 chain 392204 chr3 198295559 + 87402877 87407293 L1PA4 6152 + 1703 6139 5285 7 0 1 1575 0 1 968 0 18 1866 chain 40860 chr3 198295559 + 87433430 87433923 LTR10F 562 + 0 553 34053 177 1 60 267 0 1 48 chain 126135 chr3 198295559 + 87481442 87482820 L1PA2 6032 + 4656 6032 14532 1370 2 0 6 chain 22572 chr3 198295559 + 87485469 87485714 MER11D 897 + 0 245 53016 245 chain 123509 chr3 198295559 + 87518805 87520353 THE1A-int 1579 + 0 1579 14937 510 0 1 199 0 7 7 17 10 438 1 0 4 5 6 295 0 30 72 chain 24078 chr3 198295559 + 87520357 87520709 THE1A 353 + 4 353 50685 107 26 25 66 1 0 7 6 5 139 chain 24864 chr3 198295559 + 87543379 87543874 LTR19A 502 + 0 502 49503 34 5 4 115 11 0 30 2 76 15 51 13 72 2 0 71 11 9 13 42 29 21 chain 211708 chr3 198295559 + 87570731 87573734 HERVH-int 3825 + 961 3825 9295 273 43 13 184 9 0 257 0 27 66 45 39 133 1 14 39 0 4 76 4 9 474 15 42 364 165 0 40 1 0 166 13 8 54 23 22 33 2 0 175 0 4 348 chain 49571 chr3 198295559 + 87587331 87587897 L1PA4 6152 + 4659 5225 29743 566 chain 11653 chr3 198295559 + 87631946 87632098 L1PA8 5853 + 5703 5853 67473 37 2 1 19 1 0 93 chain 127313 chr3 198295559 + 87678917 87680450 LTR12C 1709 + 2 1709 14384 39 0 1 221 1 0 46 0 1 4 1 0 385 0 159 253 1 0 5 3 1 107 0 4 446 0 14 21 chain 3325 chr3 198295559 + 87703376 87703412 tRNA-Arg-AGG 67 + 2 38 96809 36 chain 165176 chr3 198295559 + 87707914 87709841 L1PA6 6164 + 4237 6157 11400 247 2 0 165 21 16 1492 chain 4661 chr3 198295559 + 87717721 87717820 L1M1 2793 + 1621 1723 87475 48 24 29 5 2 0 20 chain 41459 chr3 198295559 + 87727809 87728362 MER4B 649 + 58 609 33702 89 0 1 35 10 8 363 11 10 45 chain 6983 chr3 198295559 + 87742116 87742206 L1MB3 1562 + 1216 1306 77660 90 chain 85186 chr3 198295559 + 87777435 87778452 L1PA7 6471 + 5398 6429 20587 138 0 10 75 1 0 97 0 3 24 0 1 89 0 1 558 2 0 5 5 7 23 chain 65657 chr3 198295559 + 87844996 87845712 L1PA3long 6157 + 3908 4624 25042 716 chain 107019 chr3 198295559 + 87848637 87849818 L1PA4 6152 + 4169 5351 17433 1131 0 1 50 chain 143473 chr3 198295559 + 87880959 87882865 L1PA3long 6157 + 8 6157 12813 107 16 28 75 1 0 50 19 18 154 5 6 37 1 0 45 1 2 33 23 4249 293 0 1 453 1 4 327 0 2 265 chain 470963 chr3 198295559 + 87882883 87888473 L1PA6 6164 + 554 6160 3826 13 1 0 156 1 5 516 24 0 55 0 4 567 0 1 81 16 0 9 0 10 50 7 6 10 0 1 295 0 1 19 0 2 144 0 1 74 0 6 377 2 1 231 0 1 75 0 3 1026 0 1 69 0 8 39 0 2 104 0 5 353 0 1 442 0 4 79 1 3 128 0 1 477 0 1 149 chain 90075 chr3 198295559 + 87902908 87903893 L1PA3long 6157 + 4779 5765 19670 518 0 1 467 chain 399411 chr3 198295559 + 87914917 87920386 L1PB1 5432 + 24 5418 5164 107 3 0 6 4 0 264 1 0 142 2 1 64 1 0 4 0 1 4 1 0 49 10 7 26 0 4 544 5 9 146 20 0 55 0 1 172 6 12 9 1 0 5 0 1 189 0 4 12 0 8 130 4 5 214 22 23 133 0 4 113 6 0 328 19 14 8 2 0 101 2 1 136 0 1 28 25 26 102 1 0 14 1 0 105 0 1 130 4 0 200 0 1 39 3 5 45 0 1 32 13 11 135 1 0 191 0 2 164 1 2 230 0 1 4 1 0 79 0 2 122 0 1 351 32 1 11 3 0 21 1 0 9 29 22 51 6 5 11 1 0 44 1 0 16 2 0 6 16 6 17 11 8 13 2 0 24 1 0 21 1 0 13 1 0 14 chain 107608 chr3 198295559 + 87932615 87933806 L1PA3long 6157 + 3406 4597 17377 1191 chain 27879 chr3 198295559 + 87967877 87968215 THE1B-int 1605 + 29 370 45066 78 0 3 260 chain 115483 chr3 198295559 + 88015507 88016887 LTR12C 1709 + 0 1709 16315 265 1 2 224 0 1 158 0 278 143 0 47 106 0 4 330 1 0 63 5 4 84 chain 309050 chr3 198295559 + 88097376 88100968 L1PA5 6144 + 2523 6142 6637 23 0 1 628 0 2 767 4 0 130 0 1 266 0 4 125 1 6 215 0 1 28 0 1 127 0 1 524 0 2 290 10 23 122 0 1 90 1 0 241 chain 65235 chr3 198295559 + 88118814 88119553 L1PA3long 6157 + 5426 6157 25123 577 7 0 63 4 5 81 2 0 5 chain 11090 chr3 198295559 + 88120957 88121100 L1PA8 5853 + 5712 5853 68426 31 1 0 17 1 0 93 chain 37563 chr3 198295559 + 88174824 88175269 L1PA7 6471 + 6019 6466 36359 211 0 1 53 0 1 181 chain 521403 chr3 198295559 + 88181952 88188095 L1PA6 6164 + 0 6162 2207 285 0 2 280 1 0 333 3 7 24 0 2 104 0 1 216 2 0 703 1 0 204 0 1 172 1 0 240 0 6 610 2 1 52 0 1 452 1 0 388 0 1 187 1 2 83 0 8 579 0 4 1052 9 6 150 2 0 6 chain 26293 chr3 198295559 + 88245448 88245815 THE1B 368 + 0 368 47279 47 0 9 8 14 6 47 1 0 55 3 1 138 0 3 54 chain 77577 chr3 198295559 + 88303242 88304337 SVA_D 2077 + 56 2077 22186 29 0 5 46 11 0 73 0 2 49 0 11 243 4 237 15 3 0 30 0 3 37 10 714 23 16 0 37 8 7 8 0 1 71 1 3 362 4 0 15 chain 8299 chr3 198295559 + 88431190 88431307 HY1 111 + 0 111 74161 80 5 0 3 2 0 20 0 1 7 chain 13507 chr3 198295559 + 88431318 88431603 L1PB1 5432 + 5168 5427 64305 52 2 1 16 1 0 43 1 0 14 30 17 16 3 1 4 1 0 11 7 5 21 2 1 21 1 0 13 3 2 14 2 0 7 chain 36970 chr3 198295559 + 88468645 88469134 MLT2A2 560 + 0 538 36757 78 0 25 224 6 17 56 0 11 79 0 1 13 0 1 33 chain 52564 chr3 198295559 + 88470787 88471528 L1PA8 5853 + 5121 5840 28708 116 1 0 320 8 7 46 2 0 72 29 13 45 2 1 19 2 1 79 chain 50762 chr3 198295559 + 88473647 88474289 THE1B-int 1605 + 14 683 29293 296 2 4 112 0 25 232 chain 24885 chr3 198295559 + 88488924 88489233 L1PA7 6471 + 6153 6468 49465 136 4 10 169 chain 29042 chr3 198295559 + 88496247 88496622 L1P3 4156 + 3766 4139 43259 146 0 1 50 1 0 132 0 1 11 9 6 26 chain 45622 chr3 198295559 + 88513062 88513668 L1PA7 6471 + 5859 6461 31253 117 1 12 97 37 19 75 0 3 279 chain 24349 chr3 198295559 + 88543817 88544171 THE1B 368 + 0 368 50248 44 8 24 39 13 14 51 2 1 19 2 0 176 chain 12884 chr3 198295559 + 88550780 88550941 L1PB 1623 + 1290 1450 65279 8 1 0 152 chain 94630 chr3 198295559 + 88551002 88553366 L1PA3long 6157 + 3802 6150 18948 838 17 0 1457 0 1 52 chain 221994 chr3 198295559 + 88557639 88560226 L1PA4 6152 + 1468 4128 8983 852 13 12 250 0 2 180 0 1 306 3 0 112 1 0 506 1 0 188 6 82 169 chain 152210 chr3 198295559 + 88693935 88695992 L1PA11 4918 + 2376 4472 12212 296 2 3 46 0 1 40 0 1 78 0 1 105 2 1 195 0 13 80 0 4 14 0 40 267 0 4 95 1 0 548 3 1 28 5 6 6 0 1 73 25 5 60 7 6 13 2 0 35 3 2 28 chain 79036 chr3 198295559 + 88722260 88723165 L1PA3long 6157 + 5258 6157 21859 26 1 0 399 0 1 205 0 1 113 7 0 154 chain 5359 chr3 198295559 + 88729384 88729453 MER58A 224 + 49 118 83915 69 chain 43557 chr3 198295559 + 88735000 88735811 L1PB1 5432 + 4709 5427 32409 52 1 0 124 0 1 216 50 1 14 7 2 18 1 0 9 1 0 10 22 11 53 2 1 10 6 5 40 5 4 10 57 41 15 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 503462 chr3 198295559 + 88746910 88753142 L1PA6 6164 + 0 6162 3015 147 7 0 76 13 15 260 0 3 16 0 2 48 1 0 194 7 8 81 1 10 592 1 0 628 3 6 1082 0 2 522 15 0 10 23 0 534 0 4 132 0 2 263 7 6 698 51 8 139 1 0 360 6 0 314 chain 13068 chr3 198295559 + 88861160 88861442 L1PB1 5432 + 5162 5419 64988 5 2 0 53 2 1 11 9 8 38 3 2 21 23 11 15 11 8 10 2 0 25 1 0 21 1 0 13 1 0 15 chain 550979 chr3 198295559 + 88869833 88875863 L1PA2 6032 + 0 6028 676 1035 0 2 4984 4 0 7 chain 16367 chr3 198295559 + 88882395 88882650 L1PA7 6471 + 6205 6461 60553 102 13 14 29 19 11 8 0 8 84 chain 26066 chr3 198295559 + 88883123 88883481 L1PA8 5853 + 5501 5853 47635 63 1 0 44 3 1 68 3 2 9 1 2 5 2 0 65 2 1 92 chain 145999 chr3 198295559 + 88891404 88893108 L1PA4 6152 + 3311 5025 12616 126 1 4 124 4 0 115 1 2 603 0 5 59 2 6 627 0 1 42 chain 5982 chr3 198295559 + 88895757 88895829 MER45B 1037 + 858 930 81157 72 chain 35867 chr3 198295559 + 88939567 88939993 L1PA7 6471 + 6027 6461 37492 242 0 8 184 chain 29791 chr3 198295559 + 88972821 88973163 L1PA5 6144 + 5808 6143 42243 327 7 0 8 chain 81674 chr3 198295559 + 89018440 89019509 L1PA7 6471 + 5416 6459 21304 33 0 1 172 0 2 20 28 1 53 0 2 158 0 1 128 1 0 10 0 1 300 5 1 130 6 5 25 chain 7323 chr3 198295559 + 89029196 89029295 MER30 238 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120350 chr3 198295559 + 89501376 89502800 L1PA8A 6298 + 4248 5672 15471 174 0 1 402 1 0 27 0 1 631 1 0 188 chain 11450 chr3 198295559 + 89541282 89541440 MLT2A1 477 + 279 425 67832 26 1 0 80 4 0 14 7 0 26 chain 34340 chr3 198295559 + 89604404 89604776 L1PA2 6032 + 5655 6027 38462 372 chain 26990 chr3 198295559 + 89630089 89630424 THE1A 353 + 0 341 46286 111 1 0 122 2 9 99 chain 123295 chr3 198295559 + 89630434 89632337 THE1A-int 1579 + 1 1574 14980 496 352 0 36 0 10 455 10 22 554 chain 5129 chr3 198295559 + 89699821 89699977 L1PBa 3878 + 104 211 85022 31 86 37 39 chain 24829 chr3 198295559 + 89709067 89709438 L1PB2 3958 + 3451 3816 49544 94 1 0 49 0 1 23 6 5 55 8 7 9 1 0 61 2 0 20 1 0 41 chain 531876 chr3 198295559 + 89747619 89753632 L1PA3long 6157 + 4 6150 1755 124 1 15 11 13 0 556 0 2 64 0 128 344 0 1 1933 0 1 1171 0 4 283 1 0 394 1 0 781 4 2 332 chain 21850 chr3 198295559 + 89755774 89756054 L1P3 4156 + 3658 3941 54038 100 2 5 178 chain 506493 chr3 198295559 + 89831715 89837693 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0 1 397 0 3 1057 0 1 2634 1 0 354 chain 12516 chr3 198295559 + 89971952 89972133 L1PA16 3655 + 3409 3587 65958 27 0 1 102 6 5 34 3 0 9 chain 339629 chr3 198295559 + 89995980 90000000 L1P1 4361 + 1 4025 6081 1277 0 1 1924 2 1 231 1 4 160 0 1 425 chain 88891 chr3 198295559 + 90000000 90001013 L1PA4 6152 + 4031 5050 19872 423 0 3 113 3 5 461 0 1 13 chain 25101 chr3 198295559 + 90071192 90071537 LTR7 482 + 0 477 49116 69 6 95 36 1 11 13 0 1 39 0 31 10 0 1 171 chain 7741 chr3 198295559 + 90072973 90073061 LTR7Y 441 + 334 422 75513 88 chain 29204 chr3 198295559 + 90082983 90083387 LTR7 482 + 0 469 43038 69 8 46 109 9 41 12 11 5 23 0 1 163 chain 138405 chr3 198295559 + 90083419 90085102 HERVH-int 3825 + 1923 3825 13227 166 8 13 434 0 1 555 0 3 25 0 210 495 chain 23371 chr3 198295559 + 90086365 90086715 LTR7 482 + 0 469 51819 68 7 96 60 9 41 20 12 7 20 0 1 69 0 2 85 chain 61774 chr3 198295559 + 90098249 90098978 L1PA6 6164 + 4041 4776 25920 171 0 1 114 0 1 437 0 4 7 chain 3186 chr3 198295559 + 90130914 90130950 MLT2D 439 + 403 439 98023 36 chain 10135 chr3 198295559 + 90162370 90162571 L1MA5A 2387 + 2121 2283 70136 33 3 1 26 6 0 34 3 0 8 35 7 53 chain 2993 chr3 198295559 + 90217322 90217359 MER20B 722 + 523 560 99932 37 chain 78698 chr3 198295559 + 90218553 90219599 MER11A 1151 + 0 1131 21941 55 0 99 95 4 1 41 3 5 30 0 2 60 0 1 299 0 1 146 42 24 76 5 3 6 0 3 184 chain 216239 chr3 198295559 + 90265897 90268371 L1PA3long 6157 + 3678 6149 9142 2466 3 0 5 chain 34827 chr3 198295559 + 90281404 90281860 L1P1 4361 + 2365 2821 38136 288 10 10 158 chain 164531 chr3 198295559 + 90313386 90315287 L1PA3long 6157 + 4250 6152 11454 409 1 0 230 0 1 949 0 1 155 5 0 6 2 7 144 chain 19474 chr3 198295559 + 90320925 90321147 L1PA3long 6157 + 5601 5823 57064 222 chain 27603 chr3 198295559 + 90321147 90321479 L1PA3long 6157 + 5824 6157 45451 147 0 1 185 chain 560088 chr3 198295559 + 90334081 90340103 L1HS 6032 + 10 6032 170 6022 chain 374657 chr3 198295559 + 90372520 90376973 L1PA3long 6157 + 1695 6157 5575 695 0 4 64 0 2 716 0 1 368 1 2 129 1 0 449 0 1 185 1 0 1632 10 12 202 chain 133049 chr3 198295559 + 90419722 90421246 L1P1 4361 + 2807 4328 13736 5 3 0 350 3 5 981 1 0 157 1 0 23 chain 3535 chr3 198295559 + 90426234 90426273 U3 216 + 0 39 94971 39 chain 28270 chr3 198295559 + 90507212 90507521 AluYa5 310 + 0 310 44457 36 0 1 273 chain 77634 chr3 198295559 + 90544681 90545545 L1PA2 6032 + 5164 6028 22172 864 chain 11331 chr3 198295559 + 90557159 90557292 L1PA3long 6157 + 5167 5300 68033 133 chain 74150 chr3 198295559 + 90557293 90558149 L1PA3long 6157 + 5300 6156 23048 856 chain 168486 chr3 198295559 + 90624582 90626538 L1P1 4361 + 2387 4341 11188 789 0 1 109 4 3 844 0 1 17 1 0 154 1 0 23 2 1 12 chain 522788 chr3 198295559 + 91291218 91297269 L1PA4 6152 + 86 6152 2148 1348 1 0 857 1 0 403 1 6 293 0 1 177 3 1 506 0 2 671 0 4 1037 0 10 34 1 0 204 2 0 512 chain 22847 chr3 198295559 + 91352633 91352913 AluSg7 307 + 16 296 52592 50 1 0 65 0 1 164 chain 122605 chr3 198295559 + 91393997 91395336 L1PA2 6032 + 4691 6032 15095 1325 0 2 14 chain 34654 chr3 198295559 + 91438818 91439206 L1PA3long 6157 + 5767 6155 38250 388 chain 4998 chr3 198295559 + 91491596 91491661 MER34B 572 + 459 526 85675 13 0 2 52 chain 79737 chr3 198295559 + 91501378 91502430 MER11C 1089 + 0 1073 21685 237 9 18 10 1 5 47 0 4 65 1 0 171 25 26 107 7 9 38 0 1 127 0 1 54 1 0 142 0 1 10 chain 143177 chr3 198295559 + 93749362 93750946 L1PA2 6032 + 2925 4510 12843 893 0 1 691 chain 524358 chr3 198295559 + 93766946 93772956 L1PA3long 6157 + 6 6152 2075 143 16 17 269 1 2 339 0 128 1358 0 2 1145 1 0 945 0 4 650 0 1 1143 chain 213081 chr3 198295559 + 93789189 93791473 L1HS 6032 + 3746 6030 9233 2284 chain 71026 chr3 198295559 + 93806520 93807318 L1PA3long 6157 + 5353 6152 23755 656 0 1 142 chain 11383 chr3 198295559 + 93822004 93822203 L1MA5A 2387 + 2121 2283 67945 33 3 1 26 5 0 34 3 0 15 27 0 53 chain 485667 chr3 198295559 + 93832881 93838408 L1PA4 6152 + 611 6151 3517 109 0 1 484 0 11 330 0 1 929 0 4 623 2 1 61 1 0 613 0 1 32 4 1 2339 chain 21992 chr3 198295559 + 93860110 93860383 L1PA16 3655 + 3304 3578 53846 78 0 1 195 chain 20945 chr3 198295559 + 93866613 93866898 L1PA8 5853 + 5573 5853 55201 36 2 0 66 5 4 12 1 0 49 2 1 19 1 0 87 0 1 5 chain 81370 chr3 198295559 + 93889611 93890675 MER11A 1151 + 0 1151 21361 55 0 99 52 1 3 78 7 9 40 0 1 51 0 1 408 51 0 6 1 0 16 6 40 292 chain 6135 chr3 198295559 + 93907667 93907739 MER52D 1964 + 1892 1964 80588 72 chain 96798 chr3 198295559 + 93917433 93918668 LTR12C 1709 + 0 1709 18679 41 0 1 159 0 27 37 1 2 28 5 6 163 0 1 22 5 6 243 0 278 57 0 47 101 0 1 4 2 6 74 0 1 109 0 102 64 0 10 23 13 12 84 chain 220656 chr3 198295559 + 93938961 93942165 HERVH-int 3825 + 768 3825 9024 10 1 0 202 2 3 240 30 0 200 0 1 7 23 14 157 0 1 4 1 0 80 1 0 382 11 0 17 4 9 275 0 28 32 108 131 311 7 17 85 204 41 810 chain 127905 chr3 198295559 + 93944348 93945907 L1P1 4361 + 2660 4230 14297 35 4 18 270 6 5 189 1 0 50 15 6 187 0 11 247 4 0 97 0 1 267 0 1 106 1 0 80 chain 481387 chr3 198295559 + 93949717 93955463 L1PA5 6144 + 0 5871 3598 120 0 14 43 0 1 253 11 10 708 0 3 17 9 0 125 0 93 718 1 15 442 0 4 982 15 18 111 3 0 206 0 2 157 0 1 298 0 4 144 2 0 893 0 1 488 chain 77199 chr3 198295559 + 93963912 93964914 MER11A 1151 + 0 1143 22265 61 1 100 15 8 0 24 1 0 94 4 0 32 0 2 60 0 1 51 5 6 51 7 8 33 0 1 296 0 49 259 chain 64645 chr3 198295559 + 93964914 93965677 LTR17 781 + 18 781 25282 103 0 9 177 10 0 18 0 1 455 chain 3751 chr3 198295559 + 93967925 93967970 HY4 93 + 0 45 93228 45 chain 3449 chr3 198295559 + 94009021 94009059 MER66B 489 + 295 333 95663 38 chain 149461 chr3 198295559 + 94043645 94045460 SVA_A 1864 + 2 1864 12391 14 14 2 671 3 0 37 10 7 31 4 6 43 0 73 100 1 0 3 2 0 34 3 0 75 2 0 37 2 0 9 1 0 138 2 0 30 0 1 258 0 2 291 chain 22042 chr3 198295559 + 94233884 94234140 AluSg7 307 + 14 271 53783 117 0 1 139 chain 61885 chr3 198295559 + 94348264 94349027 LTR12 884 + 0 869 25892 54 0 107 175 1 2 43 2 0 488 chain 191737 chr3 198295559 + 94384409 94386769 L1PA7 6471 + 4111 6461 10038 173 17 15 1054 10 11 12 5 6 239 1 0 639 10 0 59 1 2 140 chain 2890 chr3 198295559 + 94397522 94397649 MLT1B 390 + 203 368 100926 12 7 46 16 63 62 29 chain 23396 chr3 198295559 + 94424713 94425032 L1PA6 6164 + 5834 6159 51766 109 14 22 134 3 1 59 chain 83553 chr3 198295559 + 94438794 94439717 L1PA3long 6157 + 5229 6148 20903 329 4 0 590 chain 115767 chr3 198295559 + 94476481 94477944 L1PA8 5853 + 4400 5853 16277 581 1 0 28 2 0 76 1 2 4 1 0 466 6 5 47 2 0 69 13 11 53 1 0 18 2 1 92 chain 3630 chr3 198295559 + 94496165 94496207 MLT1B 390 + 98 140 94182 42 chain 4966 chr3 198295559 + 94536789 94536848 MLT1A0-int 1658 + 1593 1652 85825 59 chain 160570 chr3 198295559 + 94551670 94553519 L1PA4 6152 + 3218 5067 11715 446 0 1 750 1 0 220 1 0 134 0 1 297 chain 53061 chr3 198295559 + 94554727 94555379 L1PA7 6471 + 5796 6464 28550 42 0 1 455 15 23 6 0 4 5 0 3 129 chain 34776 chr3 198295559 + 94574699 94575075 L1PA3long 6157 + 5781 6157 38177 376 chain 127555 chr3 198295559 + 94599281 94601132 L1PB1 5432 + 3558 5404 14347 21 1 0 4 0 1 137 0 8 86 0 5 4 1 0 209 0 7 127 0 4 16 0 1 345 0 3 85 3 0 84 0 2 98 10 10 288 26 24 11 1 0 6 19 14 9 2 0 53 2 1 16 1 0 39 5 4 16 2 0 11 14 5 15 27 22 21 1 0 21 1 0 13 chain 511521 chr3 198295559 + 94630631 94636764 L1PA6 6164 + 0 6152 2685 371 0 8 9 16 15 106 2 1 518 1 0 843 0 1 317 0 1 128 15 7 865 0 1 763 0 2 687 1 0 212 0 17 390 0 1 712 1 2 23 10 9 143 chain 70983 chr3 198295559 + 94647178 94648059 MER11D 897 + 0 897 23764 15 3 1 256 14 10 311 3 26 159 2 1 118 chain 8188 chr3 198295559 + 94677007 94677118 L1PA10 4194 + 405 514 74442 79 3 1 29 chain 23662 chr3 198295559 + 94679346 94679706 THE1A 353 + 1 353 51334 19 5 6 84 1 0 10 4 3 110 11 12 33 8 0 75 chain 5764 chr3 198295559 + 94684796 94684868 MSTD 398 + 0 72 82066 72 chain 550605 chr3 198295559 + 94745469 94751496 L1PA2 6032 + 1 6032 698 1119 0 1 605 0 1 1411 0 1 1838 0 1 1054 chain 35874 chr3 198295559 + 94792967 94793380 L1PA5 6144 + 5734 6141 37486 401 6 0 6 chain 92231 chr3 198295559 + 94794961 94795983 L1PA3long 6157 + 5125 6157 19308 207 4 14 811 chain 32415 chr3 198295559 + 94819555 94819973 L1PA8A 6298 + 5870 6291 40027 292 3 4 17 3 5 103 chain 492773 chr3 198295559 + 94836023 94841671 L1PA4 6152 + 2 5742 3351 573 1 0 278 17 0 122 0 1 944 0 1 307 4 112 762 0 1 4 1 0 575 1 2 355 1 0 214 2 1 601 0 1 886 chain 3720 chr3 198295559 + 94843972 94844016 L1M4c 1769 + 960 1004 93470 44 chain 532217 chr3 198295559 + 94846028 94852035 L1PA3long 6157 + 0 6157 1741 152 0 1 283 1 0 341 1 129 1069 0 1 194 2 3 61 1 2 1019 0 19 2491 1 0 244 0 1 147 chain 78395 chr3 198295559 + 94859892 94860946 MER11A 1151 + 0 1151 22004 79 0 8 142 1 0 65 0 11 227 0 13 137 2 5 16 1 2 8 1 2 21 2 0 7 0 4 69 0 1 17 1 59 99 5 6 87 7 6 60 chain 52528 chr3 198295559 + 94888572 94889239 HERVL-int 5654 + 4975 5646 28721 333 0 6 63 5 3 266 chain 8810 chr3 198295559 + 94927118 94927294 L1MCa 1829 + 1570 1752 72974 40 14 12 15 3 0 13 13 27 57 3 0 18 chain 9252 chr3 198295559 + 95016679 95016781 L1PA4 6152 + 5198 5300 72019 102 chain 71196 chr3 198295559 + 95016782 95017670 L1PA4 6152 + 5305 6143 23716 644 29 0 29 28 6 96 0 1 62 chain 77731 chr3 198295559 + 95021826 95022872 MER11C 1089 + 0 1063 22158 22 5 6 219 7 16 54 0 4 65 1 0 171 22 21 112 1 5 4 1 0 38 0 1 127 0 1 54 1 0 119 0 1 23 chain 3523 chr3 198295559 + 95029354 95029394 L1MC3 1789 + 329 369 95079 40 chain 66773 chr3 198295559 + 95068757 95069502 L1PA4 6152 + 5401 6146 24754 745 chain 45624 chr3 198295559 + 95092946 95093440 L1PA2 6032 + 5538 6032 31252 494 chain 33544 chr3 198295559 + 95137580 95137965 L1PA5 6144 + 5752 6138 39046 138 0 1 247 chain 3712 chr3 198295559 + 95147735 95147781 MLT1C 463 + 63 114 93517 21 0 5 25 chain 10248 chr3 198295559 + 95162106 95162234 THE1C-int 1605 + 1463 1590 69903 70 1 0 57 chain 142491 chr3 198295559 + 95215438 95217750 MER4-int 2692 + 74 2692 12893 25 1 0 15 0 2 11 1 2 17 5 6 4 1 0 230 39 35 108 10 19 31 0 20 8 23 10 33 0 2 9 0 3 100 0 4 128 1 0 159 63 35 15 1 0 44 0 1 24 1 0 19 0 3 143 2 1 50 1 17 27 1 0 26 5 8 271 0 3 10 1 4 12 1 0 6 0 310 22 0 1 17 1 0 4 6 4 9 2 3 43 3 0 38 2 1 45 45 36 114 2 8 19 19 0 18 3 1 32 21 0 8 2 21 19 6 5 14 1 11 115 chain 20381 chr3 198295559 + 95246534 95246954 THE1B 368 + 0 368 55909 13 2 0 27 1 0 3 67 0 39 10 29 40 24 24 109 16 15 69 chain 12709 chr3 198295559 + 95333027 95333222 MER30 238 + 36 237 65604 62 4 0 9 4 17 69 3 0 44 chain 35194 chr3 198295559 + 95356837 95357310 LTR2B 499 + 0 499 37899 14 0 1 15 1 11 24 4 0 45 0 19 176 0 5 6 6 1 182 chain 24692 chr3 198295559 + 95548263 95548564 L1PA4 6152 + 5846 6152 49745 5 0 2 156 0 3 140 chain 492610 chr3 198295559 + 95645053 95651229 L1PA5 6144 + 1 6144 3356 119 0 14 20 8 8 14 47 46 363 0 3 164 11 12 188 25 0 213 12 4 493 0 1 637 0 1 12 9 5 154 0 2 688 1 0 8 1 0 25 2 1 161 3 4 148 1 0 25 13 1 448 4 1 360 0 4 831 2 0 712 1 0 253 chain 30572 chr3 198295559 + 95699869 95700326 L1MA2 4263 + 2991 3445 41505 61 1 0 278 30 34 27 14 8 46 chain 7401 chr3 198295559 + 95745349 95745441 SVA_F 1814 + 1133 1221 76390 76 4 0 12 chain 96543 chr3 198295559 + 95757074 95758168 L1PA5 6144 + 3740 4839 18711 601 0 4 411 0 1 82 chain 114007 chr3 198295559 + 95769268 95770707 L1PA7 6471 + 5040 6460 16549 13 1 0 4 0 1 25 0 1 133 30 3 13 1 3 290 0 1 94 1 0 530 0 4 165 8 9 131 chain 342285 chr3 198295559 + 95776825 95780757 L1PA5 6144 + 2178 6125 6018 350 0 1 628 2 1 1183 0 4 777 0 1 374 0 11 143 6 5 469 chain 10024 chr3 198295559 + 95786192 95786298 L1PA4 6152 - 433 539 70368 106 chain 29104 chr3 198295559 + 95801424 95801736 AluYb8 318 + 0 311 43181 132 1 0 179 chain 166800 chr3 198295559 + 95804176 95805987 L1PA2 6032 + 2562 4372 11286 487 1 0 1323 chain 51231 chr3 198295559 + 95816641 95817395 MER4E1 777 + 0 769 29155 17 2 3 193 48 24 10 0 1 21 9 13 47 0 19 84 0 1 29 0 4 12 0 1 62 2 10 14 0 1 69 0 1 4 1 0 67 1 0 62 chain 51603 chr3 198295559 + 95833956 95834548 L1PA5 6144 + 4521 5122 28995 25 7 13 120 0 3 440 chain 22039 chr3 198295559 + 95834548 95834798 L1PA5 6144 + 5123 5374 53786 160 0 1 90 chain 43974 chr3 198295559 + 95834807 95835292 L1PA5 6144 + 5374 5859 32143 485 chain 47279 chr3 198295559 + 95856930 95857522 L1PA7 6471 + 5844 6470 30547 260 0 13 144 0 22 183 1 0 4 chain 535275 chr3 198295559 + 95860387 95866518 L1PA4 6152 + 0 6136 1606 2723 0 1 442 1 0 349 0 1 1625 0 1 158 0 1 269 0 1 205 0 1 359 chain 22500 chr3 198295559 + 95873839 95874122 AluSp 311 + 11 298 53119 42 1 5 240 chain 262044 chr3 198295559 + 95874405 95878046 L1PA7 6471 + 3143 6469 7906 6 3 0 155 0 1 179 9 2 11 1 0 334 1 2 241 1 2 114 0 2 86 0 1 94 0 1 294 0 4 76 0 1 121 5 2 18 23 34 30 0 1 23 2 1 5 0 1 488 0 1 224 0 2 299 333 4 71 1 0 229 12 14 152 chain 3105 chr3 198295559 + 95963869 95964112 MSTD 398 + 0 247 98747 24 193 197 26 chain 19831 chr3 198295559 + 95972826 95973157 THE1B 368 + 0 344 56635 39 1 16 52 8 19 7 11 0 36 1 0 23 2 0 84 18 17 7 0 2 42 chain 108447 chr3 198295559 + 95976525 95978103 L1PB1 5432 + 3874 5424 17259 112 0 1 39 0 3 294 3 4 94 4 3 106 1 2 95 0 2 83 1 2 98 4 3 283 5 7 10 7 0 6 0 1 16 1 0 9 27 20 53 2 1 16 6 5 39 1 0 15 23 12 19 24 19 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 258017 chr3 198295559 + 95988831 95991840 L1PA5 6144 + 3136 6142 8022 143 0 1 1061 0 4 390 0 3 330 18 6 223 9 14 385 4 4 105 1 2 84 3 2 242 4 0 7 chain 39614 chr3 198295559 + 96000991 96001565 MER61F 604 + 1 574 34951 306 59 58 116 6 8 4 1 0 40 1 0 41 chain 11680 chr3 198295559 + 96033111 96033262 MER75B 242 + 57 207 67429 88 1 0 62 chain 181959 chr3 198295559 + 96079768 96081767 L1PA3long 6157 + 4158 6157 10498 1999 chain 492319 chr3 198295559 + 96090880 96097249 L1PA7 6471 + 3 6346 3362 143 42 26 146 11 12 69 5 6 246 1 0 172 1 14 164 0 1 4 5 4 66 8 9 89 0 2 61 0 1 29 0 1 76 1 0 211 0 1 12 11 15 380 0 1 4 29 6 76 0 1 39 27 0 387 0 1 158 1 2 34 0 1 201 0 2 46 2 0 581 4 2 426 5 4 75 0 1 563 1 0 4 0 1 113 4 5 76 2 1 631 0 9 157 6 7 43 8 7 222 6 9 25 1 2 181 0 1 193 0 22 7 23 1 55 chain 25097 chr3 198295559 + 96116899 96117253 THE1A 353 + 0 353 49121 54 0 1 41 25 24 82 1 0 151 chain 121516 chr3 198295559 + 96117253 96118832 THE1A-int 1579 + 0 1579 15261 502 4 3 138 6 7 231 1 4 31 1 2 13 2 1 63 1 0 4 1 0 482 1 0 98 chain 50634 chr3 198295559 + 96211568 96212198 L1PA7 6471 + 5837 6468 29334 301 0 1 160 1 0 4 7 8 157 chain 10704 chr3 198295559 + 96212377 96212504 THE1B 368 + 241 368 69038 127 chain 27619 chr3 198295559 + 96289665 96290019 THE1A 353 + 0 353 45433 44 0 1 63 1 0 94 1 0 151 chain 48230 chr3 198295559 + 96297545 96298156 LTR12 884 + 0 869 30204 187 0 157 34 2 0 247 1 104 140 chain 4123 chr3 198295559 + 96302534 96302589 LTR12 884 + 0 54 76139 50 1 0 4 chain 17910 chr3 198295559 + 96302590 96302851 LTR12 884 + 230 609 58746 23 0 91 24 0 22 147 0 2 6 10 14 5 1 0 45 chain 13986 chr3 198295559 + 96302851 96303008 LTR12 884 + 712 869 63618 157 chain 20431 chr3 198295559 + 96321562 96321905 L1PA11 4918 + 4248 4565 55855 80 5 0 62 6 5 12 2 0 67 2 0 11 1 0 3 1 0 20 4 0 9 3 0 5 23 17 15 1 0 11 chain 91313 chr3 198295559 + 96327126 96328202 MER11C 1089 + 0 1073 19449 567 9 7 17 1 2 83 1 0 130 2 1 266 chain 86241 chr3 198295559 + 96378127 96379132 L1PA5 6144 + 3002 4034 20376 286 18 44 109 0 1 592 chain 15840 chr3 198295559 + 96383844 96384183 L1PREC2 3366 + 2631 2948 61234 80 1 0 36 7 5 27 0 1 26 2 1 39 11 7 14 76 61 20 chain 3340 chr3 198295559 + 96468567 96468605 MIRb 242 + 195 233 96681 38 chain 504239 chr3 198295559 + 96526670 96533167 L1PA6 6164 + 0 6161 2992 283 7 8 87 21 24 165 1 0 277 0 1 553 0 1 189 0 1 168 0 1 321 324 0 155 8 8 19 0 1 49 11 0 6 12 8 537 0 3 222 2 1 99 5 4 213 1 0 298 0 1 57 15 10 730 8 9 375 2 1 129 1 0 218 5 6 764 0 5 8 8 2 144 chain 67664 chr3 198295559 + 96549460 96550260 L1PA7 6471 + 5671 6462 24530 33 1 0 24 8 0 734 chain 39414 chr3 198295559 + 96580662 96581189 MLT2A2 560 + 19 560 35066 175 18 21 184 3 14 147 chain 152849 chr3 198295559 + 96625341 96627105 L1PA5 6144 + 4006 5767 12180 59 9 6 372 2 1 409 0 1 913 chain 32643 chr3 198295559 + 96654877 96655294 LTR8 732 + 0 433 39814 15 0 1 19 0 9 112 0 6 271 chain 176726 chr3 198295559 + 96700559 96703618 HUERS-P2-int 2744 + 2 2742 10739 13 1 0 16 11 5 22 1 0 28 2 0 5 1 0 53 1 0 17 0 58 9 153 120 85 1 0 12 0 1 17 1 0 283 16 14 309 42 31 420 0 1 173 0 2 288 5 0 84 0 2 189 43 74 107 1 0 49 342 10 49 1 0 7 2 1 27 1 0 4 47 44 25 3 0 33 1 0 9 2 0 5 2 0 12 2 0 27 chain 130120 chr3 198295559 + 96738684 96740114 L1PA4 6152 + 4722 6151 14023 1280 1 0 149 chain 3124 chr3 198295559 + 96750722 96750760 MER52C 1267 + 1008 1046 98607 38 chain 2633 chr3 198295559 + 96750791 96750924 MER52C 1267 + 941 1003 102830 16 14 0 16 70 13 17 chain 27901 chr3 198295559 + 96898747 96899044 AluYg6 310 + 0 297 45037 297 chain 59176 chr3 198295559 + 96903946 96904613 L1PA4 6152 + 5480 6152 26614 661 0 5 6 chain 39610 chr3 198295559 + 96947565 96948012 L1PA5 6144 + 4299 4746 34954 447 chain 8187 chr3 198295559 + 97020827 97020948 MER85 139 + 4 139 74446 89 12 26 20 chain 123138 chr3 198295559 + 97031077 97032461 L1PA4 6152 + 4771 6152 15000 1177 1 0 198 2 0 6 chain 12125 chr3 198295559 + 97072032 97072184 L1PB1 5432 + 4954 5113 66616 144 0 7 8 chain 14684 chr3 198295559 + 97169894 97170129 L1PA8 5853 + 5621 5853 62691 56 28 27 36 2 1 19 1 0 93 chain 82731 chr3 198295559 + 97184373 97185302 L1PA4 6152 + 4298 5227 21079 929 chain 14028 chr3 198295559 + 97190719 97190876 L1PA2 6032 + 5872 6028 63547 4 1 0 152 chain 13568 chr3 198295559 + 97283581 97283771 L1PA8 5853 + 5667 5852 64219 14 1 0 7 2 0 51 3 2 19 1 0 92 chain 174276 chr3 198295559 + 97330578 97332552 L1PA4 6152 + 2319 4283 10885 649 6 4 280 0 4 292 12 0 735 chain 81154 chr3 198295559 + 97371281 97372314 MER11C 1089 + 0 1066 21398 219 0 1 47 0 3 49 1 18 217 44 45 176 0 8 129 0 3 151 chain 14150 chr3 198295559 + 97436952 97437159 MER30 238 + 10 229 63378 15 4 11 53 0 1 25 4 10 72 3 0 10 0 1 21 chain 14617 chr3 198295559 + 97513228 97513614 L1MA6 2487 + 2111 2401 62778 116 54 17 33 2 0 11 104 51 38 3 0 20 1 0 4 chain 2947 chr3 198295559 + 97579792 97579823 U2 167 + 0 31 100407 31 chain 387294 chr3 198295559 + 97641427 97645678 L1PA2 6032 + 0 6032 5366 154 1 0 62 0 2 1244 1 0 802 0 4 870 0 1 344 0 1 177 0 1774 7 0 1 589 chain 92804 chr3 198295559 + 97664378 97665429 L1PA5 6144 + 4039 5092 19214 456 0 3 478 2 1 115 chain 125622 chr3 198295559 + 97832092 97833627 L1PA7 6471 + 4845 6369 14610 110 2 1 23 11 0 560 0 1 74 0 3 153 3 5 363 0 1 158 23 19 5 3 0 37 0 1 10 chain 26046 chr3 198295559 + 97868009 97868300 AluYk4 311 + 8 298 47667 124 1 0 166 chain 8890 chr3 198295559 + 97990758 97990913 L1MB2 1706 + 1548 1687 72797 28 21 7 15 1 0 13 1 0 76 chain 30460 chr3 198295559 + 98051757 98052303 L1PB1 5432 + 4922 5423 41616 181 21 13 20 1 0 10 2 1 9 2 0 3 2 0 9 2 0 52 2 1 16 1 0 44 1 0 15 23 12 18 33 21 23 1 0 22 1 0 12 1 0 19 chain 199461 chr3 198295559 + 98111620 98114556 MER61-int 3695 + 745 3695 9733 23 0 2 85 10 8 47 16 19 191 4 9 165 0 1 92 9 13 133 0 1 10 32 30 64 12 17 56 1 0 61 28 17 22 72 72 245 7 4 4 1 0 24 0 19 432 1 0 4 14 1 111 46 51 85 1 0 37 1 0 250 2 1 160 0 13 30 9 8 293 6 0 40 chain 3109 chr3 198295559 + 98141661 98141700 LTR8 732 + 652 692 98705 31 0 1 8 chain 68955 chr3 198295559 + 98151837 98152805 L1PA8 5853 + 4880 5853 24222 130 2 0 60 26 29 155 0 1 309 1 0 44 2 0 67 7 6 7 1 0 8 1 0 9 1 2 37 1 0 16 1 0 51 1 11 31 chain 468867 chr3 198295559 + 98174083 98179434 L1PA4 6152 + 0 5340 3885 577 1 0 259 17 0 642 0 1 1483 0 1 207 0 1 294 0 3 840 0 1 1031 chain 242527 chr3 198295559 + 98191464 98195390 HERVH-int 3825 + 0 3825 8409 319 14 13 78 16 15 25 37 40 12 49 249 4 0 1 22 133 0 55 0 3 196 1 3 191 48 21 184 9 0 147 15 10 198 12 9 5 0 3 149 1 36 8 0 2 60 36 53 147 9 24 371 0 1 22 0 1 62 0 1 4 92 93 119 178 14 46 4 3 154 0 3 227 4 0 31 4 7 5 3 0 48 0 2 109 1 0 17 0 10 56 1 0 54 53 1 18 0 1 63 chain 54617 chr3 198295559 + 98199718 98200438 L1PA8 5853 + 5095 5810 28005 157 0 1 311 1 0 44 2 0 70 2 1 9 1 0 11 4 5 36 2 1 19 1 0 50 chain 71183 chr3 198295559 + 98212773 98213811 MER11C 1089 + 0 1063 23720 247 0 9 61 0 4 63 2 1 149 70 68 83 6 10 4 1 0 10 0 1 27 0 1 95 31 32 55 1 0 42 1 11 90 chain 10972 chr3 198295559 + 98243744 98243873 L1PREC2 3366 + 2396 2525 68593 129 chain 72295 chr3 198295559 + 98252100 98253054 L1PA8 5853 + 4896 5848 23465 113 6 4 29 0 6 16 0 1 497 1 0 46 2 0 62 19 19 6 1 0 6 4 3 39 1 0 17 1 0 88 chain 90123 chr3 198295559 + 98294511 98295514 L1PA3long 6157 + 5154 6157 19660 1003 chain 24359 chr3 198295559 + 98339919 98340257 THE1B 368 + 0 347 50238 44 0 15 112 11 10 18 4 0 94 1 0 54 chain 84849 chr3 198295559 + 98366002 98367278 MER4-int 2692 + 86 1349 20649 13 2 0 3 3 0 12 0 2 35 0 1 4 1 0 15 0 1 153 9 11 26 5 0 177 0 9 38 10 11 63 1 0 4 12 13 38 1 2 40 1 9 146 2 0 189 13 14 38 1 0 7 14 13 25 24 0 151 chain 13131 chr3 198295559 + 98367341 98367518 MER4A1 472 + 288 469 64878 6 0 2 103 4 6 64 chain 40495 chr3 198295559 + 98396748 98397196 LTR7 482 + 0 482 34310 247 0 31 179 0 3 22 chain 470918 chr3 198295559 + 98406586 98412069 L1PA4 6152 + 1 5493 3830 127 0 14 31 2 0 407 1 0 250 20 3 138 0 1 67 1 4 2777 0 1 989 1 0 494 0 4 84 0 1 22 0 6 72 chain 394652 chr3 198295559 + 98422206 98427810 L1PB1 5432 + 33 5420 5239 72 20 23 209 18 16 156 30 29 5 0 2 7 0 1 395 0 14 235 17 21 126 15 16 43 31 0 139 1 0 44 9 0 118 5 0 66 27 0 93 24 7 220 0 1 4 1 0 279 0 4 47 6 0 76 1 0 17 2 3 321 2 0 64 0 1 340 3 4 31 0 2 294 10 0 4 7 0 154 0 1 57 1 0 168 1 0 383 0 1 19 0 3 84 1 0 174 7 0 72 0 2 8 0 1 94 2 3 167 0 1 63 9 10 5 1 0 11 17 0 41 94 10 24 1 0 9 2 1 10 4 0 11 2 0 50 1 0 18 2 1 42 1 0 16 3 0 6 16 6 10 12 10 4 1 0 11 4 3 24 1 0 21 1 0 13 1 0 16 chain 73017 chr3 198295559 + 98448637 98449548 L1PA8A 6298 + 5339 6247 23311 39 0 2 142 0 1 56 0 1 46 0 1 296 1 0 254 7 0 70 chain 9936 chr3 198295559 + 98517577 98517755 MER2 342 + 137 323 70560 87 4 5 33 29 36 25 chain 3106 chr3 198295559 + 98550644 98550700 MER53 195 - 30 87 98730 16 10 11 30 chain 3258 chr3 198295559 + 98566846 98566883 MLT2B4 540 + 503 540 97393 37 chain 501731 chr3 198295559 + 98682025 98688011 L1PA7 6471 + 453 6464 3069 11 0 1 8 1 0 740 0 5 1301 0 2 63 22 26 106 0 4 122 0 1 23 0 2 610 1 0 71 0 4 53 1 0 55 0 1 94 0 3 632 1 2 272 0 4 654 0 1 4 1 0 215 2 1 78 2 0 5 1 0 837 chain 4699 chr3 198295559 + 98780938 98780994 L1PA7 6471 + 5944 6000 87278 56 chain 41204 chr3 198295559 + 98781018 98781488 L1PA7 6471 + 6000 6470 33839 470 chain 519916 chr3 198295559 + 98858830 98864864 L1PA5 6144 + 3 6144 2278 92 1 83 127 2 0 114 0 1 485 0 1 1633 1 0 460 0 1 244 0 3 239 0 4 394 1 0 586 1 6 10 0 3 169 5 6 408 0 6 219 0 4 379 10 10 454 chain 181550 chr3 198295559 + 98908564 98910967 L1PA11 4918 + 1111 4390 10523 304 3 0 8 0 4 776 7 5 9 0 3 60 1 4 17 3 7 10 15 17 112 13 11 111 18 32 227 0 852 50 0 3 56 0 1 165 4 0 82 0 2 292 7 6 53 chain 64667 chr3 198295559 + 98950505 98951280 L1PA7 6471 + 5678 6461 25273 31 0 1 427 0 3 181 0 1 5 1 0 19 4 8 107 chain 29306 chr3 198295559 + 98953154 98953531 MLT2A1 477 + 0 381 42883 116 1 0 26 0 1 20 6 10 208 chain 70283 chr3 198295559 + 98987604 98988377 L1PA3long 6157 + 5385 6157 23930 438 0 1 328 2 0 5 chain 536218 chr3 198295559 + 99034788 99040932 L1PA4 6152 + 0 6151 1554 59 6 9 392 6 0 120 1 0 1130 1 0 1075 0 2 471 1 6 448 1 0 1011 0 1 356 0 5 99 1 0 910 0 1 56 chain 3735 chr3 198295559 + 99044946 99044987 L1PB4 2604 - 2507 2548 93358 41 chain 85657 chr3 198295559 + 99133208 99134197 L1PA6 6164 + 4250 5240 20512 76 1 2 912 chain 15270 chr3 198295559 + 99174666 99174933 L1PA15 4387 + 4105 4356 61953 25 1 0 55 1 0 22 4 0 7 12 11 42 9 6 41 3 1 11 4 0 30 chain 35595 chr3 198295559 + 99202643 99203049 L1PA3long 6157 + 5747 6157 37663 253 0 1 7 0 3 146 chain 156391 chr3 198295559 + 99243942 99245723 L1PA5 6144 + 4357 6144 11980 1093 0 4 73 1 2 283 0 1 331 chain 110803 chr3 198295559 + 99297091 99298357 L1PA3long 6157 + 4883 6153 16967 567 4 0 373 14 14 35 0 3 19 0 5 254 chain 414576 chr3 198295559 + 99301785 99306654 L1PA6 6164 + 1283 6159 4967 541 2 1 215 6 2 282 2 1 864 0 1 692 13 14 1418 0 8 182 0 3 319 0 1 176 15 16 135 2 0 5 chain 100263 chr3 198295559 + 99309646 99311381 L1PA14 3548 + 1956 3467 18268 139 0 1 13 21 22 36 0 1 4 1 0 308 0 1 54 2 1 153 1 0 243 13 10 49 17 14 109 8 4 13 2 0 6 1 0 4 1 0 6 0 1 6 2 1 66 1 0 83 255 45 30 4 2 12 1 0 3 1 0 18 1 0 42 0 5 6 chain 131209 chr3 198295559 + 99362062 99363548 L1PA3long 6157 + 4007 6157 13899 689 5 663 668 15 21 109 chain 3898 chr3 198295559 + 99366806 99366886 MADE1 96 + 0 96 92141 48 2 18 30 chain 18963 chr3 198295559 + 99380059 99380278 L1PA5 6144 + 5922 6141 57584 219 chain 65331 chr3 198295559 + 99380495 99381284 L1PA7 6471 + 5676 6467 25099 460 0 1 183 5 6 141 chain 423365 chr3 198295559 + 99450736 99455569 L1PA4 6152 + 697 5522 4835 419 1 0 353 0 4 1121 0 1 764 2 0 1048 12 1 616 0 1 497 chain 33096 chr3 198295559 + 99492390 99492931 L1MA1 4479 + 3610 4142 39440 32 20 22 22 2 1 28 1 0 24 2 0 16 1 0 71 1 0 19 2 0 14 1 0 62 9 8 18 8 4 71 0 5 79 3 1 35 chain 13294 chr3 198295559 + 99542023 99542169 LTR13 1007 + 0 146 64634 146 chain 41580 chr3 198295559 + 99582017 99582660 L1MA1 4479 + 2626 3247 33638 43 1 0 48 1 0 54 3 1 18 2 0 14 1 0 29 5 0 33 2 0 5 6 7 80 1 0 26 14 12 162 8 6 14 14 10 59 chain 501862 chr3 198295559 + 99589046 99594989 L1PA6 6164 + 169 6150 3063 42 0 1 106 0 2 198 0 2 47 1 0 1765 0 2 625 0 2 53 0 8 160 6 8 33 10 9 58 1 0 366 1 4 73 8 9 625 1 5 39 0 2 236 1 0 24 0 1 80 0 4 390 0 1 166 0 5 235 8 10 585 chain 22993 chr3 198295559 + 99625647 99626015 L1M1 2793 + 766 1122 52371 6 2 0 25 2 1 33 2 0 8 5 4 50 26 22 73 1 0 15 1 0 119 chain 53721 chr3 198295559 + 99680736 99681346 L1PA5 6144 + 4730 5338 28308 564 2 0 44 chain 4984 chr3 198295559 + 99691450 99691502 MER5A1 166 + 1 53 85730 52 chain 59085 chr3 198295559 + 99727651 99728302 L1P1 4361 + 3642 4292 26641 512 1 0 138 chain 10787 chr3 198295559 + 99772101 99772463 L1MC1 2226 + 1844 2198 68884 12 0 3 28 21 15 15 1 0 34 0 1 7 28 39 39 107 92 7 1 0 16 1 0 27 3 4 15 chain 50457 chr3 198295559 + 99841646 99842473 L1PB1 5432 + 4629 5422 29395 11 1 0 164 1 0 79 4 7 122 8 6 85 1 2 8 4 1 20 1 0 10 1 0 13 6 2 9 2 0 52 2 1 16 4 3 41 8 7 8 2 0 6 17 7 17 3 1 5 1 0 14 3 1 23 8 7 14 1 0 13 1 0 18 chain 16113 chr3 198295559 + 99843811 99844046 MER1B 344 + 89 327 60881 127 4 0 20 3 5 35 5 10 41 chain 3544 chr3 198295559 + 99998174 99998213 MADE1 96 + 57 96 94913 39 chain 3841 chr3 198295559 + 100096941 100096985 MER2 342 + 135 179 92555 44 chain 112609 chr3 198295559 + 100137948 100139301 L1PA8A 6298 + 4936 6290 16732 553 0 3 251 3 0 249 9 10 288 chain 373910 chr3 198295559 + 100237369 100242960 HERVL-int 5654 + 326 5654 5587 124 623 638 36 2 1 12 323 0 453 0 1 148 0 1 219 0 2 29 0 1 146 14 11 615 0 3 5 9 6 243 0 8 52 0 3 17 0 1 279 0 1 178 0 15 518 0 2 553 0 1 248 0 5 25 17 15 145 0 1 138 8 6 54 0 3 35 0 1 40 0 3 67 0 1 5 0 3 211 chain 7727 chr3 198295559 + 100272406 100272493 L1PREC2 3366 + 2565 2652 75543 87 chain 71271 chr3 198295559 + 100327238 100329066 L1PB1 5432 + 4322 5420 23707 149 0 2 18 8 7 18 0 5 78 6 10 17 0 4 9 411 0 172 7 5 170 300 0 20 1 0 97 5 0 14 4 9 12 1 0 9 1 0 10 5 1 9 3 1 52 2 1 16 1 0 43 1 0 16 1 0 6 19 9 16 2 0 5 1 0 14 2 0 11 14 13 21 8 7 6 1 0 16 chain 3164 chr3 198295559 + 100334456 100334525 MER63B 433 + 362 431 98254 24 17 18 8 1 0 19 chain 92859 chr3 198295559 + 100351221 100352239 L1PA3long 6157 + 4605 5626 19204 39 0 5 515 1 0 232 1 0 230 chain 6593 chr3 198295559 + 100390392 100390537 Tigger3b 1229 + 51 209 79000 53 50 63 42 chain 10435 chr3 198295559 + 100392760 100392893 L1PB3 3668 + 3302 3434 69549 86 4 3 43 chain 7044 chr3 198295559 + 100404385 100404521 MER3 215 + 53 215 77461 52 0 4 8 17 21 10 14 32 35 chain 167472 chr3 198295559 + 100445686 100447608 L1PA6 6164 + 4240 6162 11246 1288 0 2 624 2 0 8 chain 24331 chr3 198295559 + 100497934 100498309 THE1D 372 + 0 372 50284 56 16 7 103 40 45 56 0 1 104 chain 543331 chr3 198295559 + 100509607 100515638 L1PA3long 6157 + 1 6157 1117 151 0 1 614 9 137 200 4 0 3530 0 1 1085 2 1 436 chain 7744 chr3 198295559 + 100524528 100524623 MER33 330 + 6 101 75501 95 chain 5526 chr3 198295559 + 100549742 100550207 L1PA2 6032 + 5574 6031 83126 275 8 0 182 chain 35434 chr3 198295559 + 100574175 100574570 L1PA4 6152 + 3163 3558 37762 395 chain 29527 chr3 198295559 + 100587918 100588227 AluYk12 309 + 0 309 42577 309 chain 50061 chr3 198295559 + 100601863 100602421 LTR6B 557 + 0 557 29540 399 1 0 158 chain 131203 chr3 198295559 + 100619155 100620604 L1PA4 6152 + 2735 4184 13901 1449 chain 66494 chr3 198295559 + 100904665 100905420 L1PA4 6152 + 5395 6150 24827 596 1 0 9 3 4 146 chain 160180 chr3 198295559 + 100908502 100910416 L1PA7 6471 + 4554 6465 11741 649 1 0 236 4 0 42 3 0 41 0 1 104 4 0 192 0 1 154 1 0 136 0 10 339 2 0 6 chain 8404 chr3 198295559 + 101075815 101075934 L1PB4 2604 + 2404 2528 73892 47 9 14 63 chain 27773 chr3 198295559 + 101085237 101085591 THE1A 353 + 0 353 45222 109 2 1 92 1 0 38 0 1 112 chain 545834 chr3 198295559 + 101108330 101114475 L1PA4 6152 + 3 6152 978 481 1 2 758 1 0 170 13 4 1712 0 2 29 0 1 112 0 4 1008 0 2 1016 0 4 844 chain 13723 chr3 198295559 + 101117241 101117420 Tigger1 2417 + 1815 1998 63986 117 3 7 59 chain 14875 chr3 198295559 + 101132821 101133015 MER107 203 + 5 203 62418 45 0 1 117 3 6 29 chain 24681 chr3 198295559 + 101133168 101133517 THE1A 353 + 0 351 49761 23 3 4 52 11 12 20 1 0 59 0 1 31 1 0 98 1 2 49 chain 110200 chr3 198295559 + 101145429 101146633 L1PA4 6152 + 4947 6152 17055 1056 0 1 148 chain 173750 chr3 198295559 + 101173894 101175952 L1PA7 6471 + 4410 6469 10911 420 1 0 54 0 1 565 0 1 170 1 0 687 1 2 139 1 0 7 1 2 11 chain 4533 chr3 198295559 + 101197569 101197754 MER33 330 + 22 235 88146 48 111 139 26 chain 5164 chr3 198295559 + 101210321 101210384 Tigger3c 601 + 477 540 84846 63 chain 295276 chr3 198295559 + 101236403 101240078 L1PA7 6471 + 0 6470 6971 180 0 1 77 4 5 140 16 0 555 0 1 318 19 17 408 0 2 102 0 1 125 0 1 691 4 2793 118 0 2 5 2 0 77 1 0 90 0 1 67 1 2 154 0 14 189 0 1 171 1 2 160 chain 22852 chr3 198295559 + 101248123 101248467 THE1B 368 + 0 368 52578 44 1 16 109 1 0 23 47 57 119 chain 20695 chr3 198295559 + 101327226 101327601 THE1C 375 + 0 375 55506 18 0 1 4 1 0 41 22 23 26 2 1 24 3 7 34 0 2 5 50 45 118 1 0 26 chain 87334 chr3 198295559 + 101345641 101346865 L1PB1 5432 + 4187 5392 20168 17 0 2 41 0 1 302 1 0 61 2 0 17 0 1 74 0 2 39 0 6 146 1 3 115 0 2 87 4 3 8 1 0 24 1 0 8 1 0 12 5 1 8 2 0 49 22 20 45 1 0 12 18 5 29 2 0 4 1 0 15 2 0 24 1 0 22 chain 13073 chr3 198295559 + 101349548 101349689 L1PA4 6152 + 6005 6146 64979 141 chain 22731 chr3 198295559 + 101376534 101376784 L1PA4 6152 + 5891 6141 52783 250 chain 188026 chr3 198295559 + 101406594 101409069 L1PBa 3878 + 1046 3802 10209 254 0 1 192 0 4 98 0 275 105 0 9 368 1 0 68 1 2 164 0 4 116 0 2 326 13 10 12 0 1 162 1 0 236 6 7 233 0 1 21 1 0 21 2 0 10 3 2 8 5 0 15 1 0 4 6 4 12 1 0 9 chain 22928 chr3 198295559 + 101421972 101422329 MER1B 344 + 0 344 52474 18 20 23 210 42 26 67 chain 15453 chr3 198295559 + 101426785 101426981 L1PA13 3608 + 641 837 61723 196 chain 238079 chr3 198295559 + 101432905 101436551 L1MA1 4479 + 535 4136 8521 33 0 3 124 0 2 12 1 0 20 1 0 54 11 12 20 0 5 118 0 6 35 25 9 48 2 1 87 0 6 176 2 3 201 28 12 79 0 2 121 0 3 108 2 1 109 2 0 8 0 1 80 0 1 6 0 2 5 14 19 15 3 4 48 1 0 26 33 34 408 1 0 68 1 0 91 12 10 31 13 12 48 0 5 29 0 1 31 22 0 15 16 15 24 2 0 121 53 53 19 4 0 68 24 20 20 3 0 14 0 4 55 41 41 121 2 0 195 5 4 22 2 0 16 1 0 8 12 13 70 2 0 13 1 0 88 1 0 5 3 0 126 1 0 29 2 0 29 chain 130053 chr3 198295559 + 101438896 101440591 SVA_F 1814 + 335 1814 14034 51 1 2 313 0 40 125 97 0 21 0 1 59 0 15 4 177 0 161 0 1 686 chain 1988 chr3 198295559 + 101439386 101439411 SVA_F 1814 + 916 941 68823 25 chain 3638 chr3 198295559 + 101439435 101439483 SVA_F 1814 + 867 916 38166 19 0 2 10 1 0 18 chain 13417 chr3 198295559 + 101439567 101439744 SVA_F 1814 + 1015 1142 38166 76 50 0 51 chain 90393 chr3 198295559 + 101443903 101444902 L1PA3long 6157 + 5158 6157 19611 999 chain 387322 chr3 198295559 + 101448642 101453025 L1PA4 6152 + 902 5300 5365 513 0 5 255 0 2 396 0 3 105 0 4 134 0 1 195 1 0 668 2 0 495 0 2 252 5 7 366 1 0 995 chain 467335 chr3 198295559 + 101466714 101472656 L1PA6 6164 + 0 6160 3926 234 6 8 77 1 0 199 0 2 47 1 0 464 0 2 1108 0 1 71 0 2 6 9 0 143 0 1 25 0 2 80 40 0 107 13 0 8 0 13 179 323 0 401 8 582 142 0 2 40 5 7 1339 0 4 30 3 0 506 1 2 326 chain 3247 chr3 198295559 + 101481903 101482016 L1MC 810 + 172 287 97500 8 2 0 3 1 0 23 28 28 19 10 9 13 0 6 6 chain 33430 chr3 198295559 + 101482877 101483439 L1PA16 3655 + 3024 3563 39150 63 12 8 53 0 6 50 6 5 79 14 12 116 8 7 22 1 0 4 2 18 54 38 2 40 chain 47338 chr3 198295559 + 101494601 101495333 L1PA11 4918 + 3826 4578 30527 146 0 1 234 0 13 60 1 2 31 0 4 49 33 53 56 2 0 13 1 0 20 4 0 9 47 37 13 2 0 11 chain 31379 chr3 198295559 + 101527538 101528001 MLT2A1 477 + 0 477 40827 142 0 1 26 0 4 30 2 1 70 1 2 106 44 54 22 1 0 19 chain 13338 chr3 198295559 + 101550355 101550594 MER50B 698 + 167 428 64570 37 7 33 109 39 0 12 3 38 32 chain 131385 chr3 198295559 + 101550912 101552496 SVA_A 1864 + 26 1864 13881 626 1 111 124 18 15 81 4 1 88 0 73 38 2 79 602 chain 9614 chr3 198295559 + 101552798 101552909 THE1B 368 + 243 354 71235 111 chain 119478 chr3 198295559 + 101552940 101554496 THE1B-int 1605 + 17 1598 15613 411 1 26 207 1 2 19 7 6 262 0 6 6 5 0 7 0 2 61 4 1 80 1 0 10 12 13 192 0 1 6 1 0 263 chain 2837 chr3 198295559 + 101556261 101556326 MER34C_ 573 + 237 301 101356 21 23 22 21 chain 7796 chr3 198295559 + 101610285 101610409 Tigger3b 1229 + 528 646 75382 18 2 0 21 12 8 71 chain 57440 chr3 198295559 + 101630039 101630771 MER4E1 777 + 0 770 27120 26 0 2 49 0 2 102 0 3 145 0 19 84 0 1 11 1 2 63 0 2 28 3 11 220 chain 7839 chr3 198295559 + 101647420 101647518 HY3 101 + 0 98 75278 98 chain 73404 chr3 198295559 + 101691892 101692861 LTR5_Hs 974 + 0 974 23236 167 1 0 118 0 1 181 0 1 79 8 4 19 2 1 5 0 1 19 2 0 60 1 0 161 10 17 31 8 6 20 0 6 77 chain 422494 chr3 198295559 + 101692861 101699245 HERVK-int 6823 + 0 6567 4849 5 1 0 11 1 0 3 1 0 23 1 0 20 1 0 38 1 0 21 15 12 11 12 0 311 1 0 205 2 0 26 1 0 21 1 0 251 95 94 17 0 1 4 1 0 250 118 121 11 1 0 361 44 38 175 80 77 397 1 2 10 32 89 272 1 0 4 0 1 7 2 1 73 21 20 114 0 2 117 0 11 90 0 1 148 0 3 57 4 5 157 26 7 151 1 0 22 9 13 1612 9 297 58 1 0 36 1 0 124 1 0 49 3 0 5 1 0 7 1 0 3 1 0 74 3 1 7 1 0 24 17 11 11 1 0 20 2 0 3 1 0 8 1 0 5 172 101 9 2 0 12 1 0 14 4 6 6 2 0 30 8 3 7 1 0 3 1 0 10 10 6 10 11 5 7 1 0 8 1 0 9 1 0 22 1 0 4 1 0 12 35 26 17 1 0 4 chain 76137 chr3 198295559 + 101700046 101701015 LTR5_Hs 974 + 0 974 22530 167 1 0 122 0 1 177 0 1 102 2 1 5 0 1 79 1 0 161 10 17 31 8 6 103 chain 5602 chr3 198295559 + 101720022 101720092 MER53 195 + 108 179 82799 33 0 1 37 chain 513454 chr3 198295559 + 101735399 101742744 L1PA7 6471 + 0 6470 2602 301 1 0 66 6 7 36 0 2 195 0 1 198 1 0 17 1 0 86 1 0 252 1 6 316 0 6 111 0 1 219 1 0 231 16 20 22 1 0 388 4 5 99 4 9 38 14 0 57 6 7 193 6 10 187 10 14 53 1 5 79 0 3 186 0 1 122 0 4 17 0 4 95 0 5 27 0 1 253 0 1 44 1 0 3 1 0 38 6 7 4 1 0 203 303 0 403 7 16 250 307 0 265 0 7 425 0 7 172 329 0 70 0 4 245 3 0 107 1 0 81 1 4 4 0 1 140 1 2 12 chain 88165 chr3 198295559 + 101746252 101747211 L1PA3long 6157 + 4720 5679 20013 959 chain 18526 chr3 198295559 + 101778071 101778279 L1PA5 6144 + 5936 6144 58075 208 chain 19279 chr3 198295559 + 101842443 101842708 MER30 238 + 0 238 57261 107 27 0 131 chain 24493 chr3 198295559 + 101948967 101949326 THE1B 368 + 0 368 50032 169 1 0 23 41 51 125 chain 9288 chr3 198295559 + 101986500 101986602 L1PA2 6032 + 5930 6032 71932 102 chain 4924 chr3 198295559 + 101998210 101998297 L1MA8 2339 + 2198 2279 86026 35 2 0 24 1 0 8 5 2 12 chain 443888 chr3 198295559 + 102008204 102013269 L1PA4 6152 + 2 5077 4499 578 1 0 582 0 3 70 0 1 8 0 1 45 0 1 1472 0 1 118 10 0 320 0 12 564 0 1 313 0 1 984 chain 532574 chr3 198295559 + 102039930 102046053 L1PA5 6144 + 0 6142 1727 3861 1 2 481 0 4 87 0 6 56 0 1 322 5 5 105 0 1 215 0 5 852 0 1 138 chain 20416 chr3 198295559 + 102050518 102050881 THE1B 368 + 0 368 55866 13 2 0 31 4 5 62 4 5 58 71 76 118 chain 125184 chr3 198295559 + 102050898 102052451 THE1B-int 1605 + 17 1600 14671 415 0 25 573 0 5 565 chain 24501 chr3 198295559 + 102052456 102052801 THE1B 368 + 0 368 50018 44 0 15 108 4 3 16 6 8 26 1 0 83 2 0 6 0 10 49 chain 46330 chr3 198295559 + 102052801 102053445 L1PREC2 3366 + 2094 2706 30908 307 0 1 10 1 2 68 43 10 57 2 1 156 chain 80954 chr3 198295559 + 102071950 102072849 L1PA3long 6157 + 5258 6156 21444 138 1 0 760 chain 3994 chr3 198295559 + 102081057 102081109 MLT1B 390 + 64 117 91486 26 0 1 26 chain 66310 chr3 198295559 + 102101006 102101820 L1PA8 5853 + 5045 5853 24871 196 0 4 186 4 0 133 1 0 45 2 0 73 1 0 58 2 1 19 1 0 93 chain 205151 chr3 198295559 + 102127321 102129588 L1PA3long 6157 + 3887 6157 9531 50 0 1 1226 0 3 229 1 0 761 chain 3236 chr3 198295559 + 102209971 102210009 MIR 256 + 197 235 97601 38 chain 207138 chr3 198295559 + 102215453 102217728 L1PA2 6032 + 3746 6027 9457 1359 0 1 768 1 0 135 0 6 12 chain 46904 chr3 198295559 + 102270637 102271158 L1PA4 6152 + 5631 6152 30698 521 chain 91805 chr3 198295559 + 102293936 102295006 MER11C 1089 + 0 1073 19368 527 0 1 63 0 1 84 1 0 209 1 2 26 0 1 159 chain 84642 chr3 198295559 + 102495436 102496355 L1PA2 6032 + 5110 6029 20695 919 chain 108457 chr3 198295559 + 102566727 102568077 L1PA7 6471 + 5122 6470 17257 246 5 6 209 0 2 258 1 2 381 0 2 27 1 3 109 8 0 94 2 0 9 chain 4950 chr3 198295559 + 102610721 102610783 MER92B 628 + 0 61 85895 55 1 0 6 chain 215291 chr3 198295559 + 102622174 102624563 L1PA3long 6157 + 3771 6157 9165 13 0 1 307 0 1 216 4 0 1390 1 0 458 chain 26773 chr3 198295559 + 102723502 102723845 THE1A 353 + 0 341 46578 109 2 1 88 1 0 143 chain 119961 chr3 198295559 + 102723854 102725400 THE1A-int 1579 + 0 1573 15543 62 0 18 89 2 1 5 0 1 450 0 1 561 1 7 279 0 1 28 0 1 7 1 0 36 4 6 9 1 0 11 chain 29108 chr3 198295559 + 102725406 102725761 THE1A 353 + 0 353 43174 108 1 0 90 1 0 155 chain 51159 chr3 198295559 + 102777364 102777945 L1PA5 6144 + 3881 4473 29178 456 0 4 36 0 7 89 chain 247219 chr3 198295559 + 102823113 102825923 L1PA4 6152 + 3063 5878 8300 877 0 1 587 0 4 1346 chain 4515 chr3 198295559 + 102871644 102871804 L1MA8 2339 + 2033 2139 88233 46 94 40 20 chain 3492 chr3 198295559 + 102953504 102953547 MER89 557 + 0 45 95307 8 0 2 35 chain 47593 chr3 198295559 + 102971402 102971927 L1PA3long 6157 + 1972 2497 30442 525 chain 58451 chr3 198295559 + 102996094 102997061 L1MA1 4479 + 3231 4172 26824 20 1 0 14 9 6 49 1 4 26 0 1 31 3 0 5 2 0 6 0 1 126 1 0 124 27 29 5 2 0 37 1 0 24 2 0 16 2 1 14 0 1 55 1 0 20 2 0 14 1 0 72 0 1 5 22 14 123 12 11 19 2 0 37 1 0 9 1 0 6 4 2 13 chain 26722 chr3 198295559 + 103014095 103014413 AluYk4 311 + 0 308 46654 118 10 0 190 chain 4768 chr3 198295559 + 103014815 103015021 L1MB1 2102 + 1814 2043 86869 36 104 132 25 16 12 19 1 0 5 chain 75399 chr3 198295559 + 103028249 103029063 L1PA2 6032 + 5216 6030 22744 814 chain 7871 chr3 198295559 + 103108631 103108721 L1M1 2793 + 1386 1476 75193 90 chain 25155 chr3 198295559 + 103121267 103121547 L1PA4 6152 + 5870 6151 49025 276 0 1 4 chain 45650 chr3 198295559 + 103133530 103134032 L1PA3long 6157 + 5639 6142 31234 184 0 1 318 chain 21016 chr3 198295559 + 103142134 103142388 L1PA6 6164 + 5913 6162 55100 239 5 0 10 chain 2966 chr3 198295559 + 103205616 103205651 MADE1 96 - 58 93 100222 35 chain 380444 chr3 198295559 + 103210755 103215466 HERVK9-int 4720 + 36 4720 5474 13 8 5 4 1 0 46 0 6 13 2 1 8 1 0 4 0 1 23 1 0 373 1 0 645 36 17 5 0 2 211 5 1 1008 1 2 94 0 13 272 5 1 1198 16 0 310 16 17 391 chain 39951 chr3 198295559 + 103215466 103215965 MER9a3 513 + 0 503 34698 18 0 2 90 0 1 118 9 10 19 1 0 176 0 1 68 chain 554276 chr3 198295559 + 103220448 103226476 L1PA2 6032 + 3 6032 460 700 0 1 2254 0 1 2924 1 0 149 chain 388133 chr3 198295559 + 103232777 103237339 L1PA2 6032 + 1785 6032 5348 1170 315 0 3077 chain 21757 chr3 198295559 + 103281663 103281906 L1P2 5180 + 1709 1953 54158 104 0 1 139 chain 4347 chr3 198295559 + 103345446 103345496 MLT2A2 560 + 508 558 89197 50 chain 2760 chr3 198295559 + 103396326 103396383 L1MA4 2864 + 2746 2801 101907 21 14 12 22 chain 61661 chr3 198295559 + 103418418 103419121 L1PA5 6144 + 5434 6138 25953 132 0 1 571 chain 12120 chr3 198295559 + 103444900 103445081 THE1B 368 + 0 182 66631 47 18 20 105 1 0 10 chain 27833 chr3 198295559 + 103464830 103465197 L1PA7 6471 + 6086 6457 45136 51 1 2 156 1 3 129 0 1 29 chain 12590 chr3 198295559 + 103528174 103528311 L1PA2 6032 + 5895 6032 65811 137 chain 26522 chr3 198295559 + 103535357 103535747 MER51B 395 + 0 381 46946 39 13 0 112 0 3 5 11 12 57 1 2 15 1 0 136 chain 6446 chr3 198295559 + 103616346 103616455 MER21C 908 + 713 824 79532 11 12 11 5 0 2 25 1 2 55 chain 24201 chr3 198295559 + 103633096 103633425 THE1C 375 + 2 333 50497 123 13 14 45 1 2 147 chain 58907 chr3 198295559 + 103692505 103693206 L1PA7 6471 + 5772 6468 26690 118 1 2 560 6 0 16 chain 54798 chr3 198295559 + 103710698 103711305 L1PA3long 6157 + 4754 5363 27949 522 0 3 21 1 0 63 chain 45037 chr3 198295559 + 103727826 103728402 LTR12_ 688 + 0 688 31558 412 1 103 150 0 10 13 chain 61583 chr3 198295559 + 103750343 103751031 L1PA3long 6157 + 5467 6157 25964 450 8 10 230 chain 51069 chr3 198295559 + 103758994 103759727 L1PA8 5853 + 5123 5853 29201 29 55 58 260 0 1 93 1 0 44 2 0 69 16 14 48 3 2 19 1 0 93 chain 47186 chr3 198295559 + 103831466 103832123 L1PA8 5853 + 5199 5853 30575 357 12 15 37 14 12 55 5 4 12 1 0 47 7 6 16 1 0 93 chain 8491 chr3 198295559 + 103898797 103898925 Tigger1 2417 + 2204 2335 73694 45 0 1 5 8 9 35 0 1 35 chain 6106 chr3 198295559 + 103905931 103906034 MER2 342 + 143 251 80705 72 12 17 19 chain 212529 chr3 198295559 + 103932185 103934627 L1PA5 6144 + 3688 6139 9254 140 0 2 449 0 2 195 0 1 150 0 1 664 0 3 699 2 0 6 0 2 137 chain 79328 chr3 198295559 + 103975092 103976087 L1PA7 6471 + 3688 4682 21773 141 11 0 56 0 1 115 3 0 206 0 1 277 1 8 174 0 4 11 chain 44752 chr3 198295559 + 104041682 104042203 L1PA4 6152 + 5609 6143 31720 223 0 7 128 0 4 18 5 0 17 0 7 130 chain 12891 chr3 198295559 + 104081662 104081814 L1PA2 6032 + 5861 6019 65269 8 4 0 11 0 10 129 chain 94363 chr3 198295559 + 104084050 104085127 L1PA5 6144 + 5062 6144 18988 231 8 13 838 chain 43189 chr3 198295559 + 104089925 104090630 MER11A 1151 + 463 1145 32656 75 0 1 71 19 7 8 0 12 38 13 21 114 0 26 26 43 0 21 18 0 37 0 1 60 23 25 139 chain 29187 chr3 198295559 + 104090730 104091082 MER11D 897 + 0 897 43069 15 1 0 34 0 546 302 chain 169919 chr3 198295559 + 104115054 104117467 L1PA11 4918 + 1884 4331 11108 89 26 27 146 9 8 33 2 4 6 2 0 15 1 0 20 19 16 7 0 4 67 12 15 183 0 2 12 0 28 167 5 6 91 16 14 84 21 22 4 1 0 95 6 0 635 6 9 196 9 14 428 chain 68700 chr3 198295559 + 104121308 104122084 L1PA5 6144 + 3517 4293 24286 776 chain 18084 chr3 198295559 + 104213950 104214154 L1PA3long 6157 + 5953 6157 58575 204 chain 485168 chr3 198295559 + 104304046 104310377 L1PA7 6471 + 32 6372 3529 243 20 20 108 1 2 231 0 13 240 5 6 282 10 0 8 0 10 353 0 4 95 2 3 109 2 1 401 0 2 475 0 3 522 7 8 241 4 0 74 0 1 32 22 22 71 1 0 29 4 3 80 0 1 272 3 0 212 0 1 110 0 2 163 2 3 132 0 5 124 0 1 266 31 10 390 1 0 4 0 1 200 1 0 510 0 1 145 1 2 34 9 10 49 chain 136778 chr3 198295559 + 104327755 104330092 L1PB1 5432 + 3071 5303 13359 119 0 1 90 0 1 119 0 5 189 1 3 28 0 207 31 0 4 71 0 1 46 0 1 47 0 1 181 11 43 162 6 7 171 0 6 8 15 8 68 291 28 87 12 11 288 81 2 12 8 5 16 37 29 53 2 1 16 1 0 44 1 0 15 3 0 7 chain 23296 chr3 198295559 + 104329119 104329406 AluSc 308 + 10 297 51936 287 chain 4961 chr3 198295559 + 104351976 104352090 MER4A1 472 + 342 458 85837 22 45 47 47 chain 15751 chr3 198295559 + 104373666 104373849 L1PA7 6471 + 5438 5621 61352 183 chain 69670 chr3 198295559 + 104373850 104374690 L1PA7 6471 + 5621 6460 24080 79 0 2 457 13 9 145 0 1 146 chain 3928 chr3 198295559 + 104377430 104377658 MLT1D 503 + 50 268 91926 42 166 156 20 chain 2973 chr3 198295559 + 104405361 104405405 L1MA3 4352 - 2777 2822 100141 14 1 2 29 chain 3435 chr3 198295559 + 104438085 104438126 MER20 218 + 41 82 95776 41 chain 5059 chr3 198295559 + 104484166 104484222 L1P3 4156 + 1458 1514 85351 56 chain 510962 chr3 198295559 + 104484651 104491115 L1PA7 6471 + 0 6457 2720 83 1 0 326 0 3 71 0 1 124 5 4 119 9 5 201 9 17 35 1 2 343 0 1 335 5 6 359 1 0 26 1 2 74 0 1 189 6 0 19 1 2 232 3 0 58 1 3 217 0 1 237 0 4 429 1 0 49 0 5 232 0 1 7 7 6 180 1 0 66 29 10 121 0 2 5 2 0 601 6 5 132 1 0 491 0 1 178 1 0 23 12 16 49 5 6 395 4 1 196 1 5 6 4 0 139 chain 33371 chr3 198295559 + 104522026 104522491 LTR2B 499 + 34 499 39198 10 10 0 67 0 12 14 12 0 17 25 36 129 1 0 180 chain 36928 chr3 198295559 + 104544348 104544790 LTR2 463 + 0 463 36789 162 0 21 6 1 0 236 0 1 37 chain 55786 chr3 198295559 + 104545287 104546042 MER4E1 777 + 0 767 27632 23 1 0 223 1 0 4 0 1 119 0 20 19 0 1 23 1 0 90 42 35 209 chain 6891 chr3 198295559 + 104619170 104619472 MER74A 558 + 217 540 77992 18 34 0 8 14 49 42 142 162 44 chain 35119 chr3 198295559 + 104666170 104666654 THE1B-int 1605 + 1119 1596 37944 27 10 11 244 14 0 82 0 6 107 chain 3883 chr3 198295559 + 104678103 104678178 LTR12F 595 + 144 210 92270 31 19 10 25 chain 9499 chr3 198295559 + 104697463 104697600 L1P2 5180 + 828 961 71472 16 9 6 21 1 0 90 chain 31902 chr3 198295559 + 104700870 104701321 MER4A1 472 + 0 472 40415 18 0 1 6 6 5 195 31 52 195 chain 31128 chr3 198295559 + 104773478 104773918 MLT2A1 477 + 2 477 41037 166 5 2 13 0 1 19 0 1 178 7 3 10 10 46 24 0 4 8 chain 38228 chr3 198295559 + 104779304 104779845 LTR12F 595 + 0 568 35889 80 25 0 20 0 12 31 3 1 33 5 47 344 chain 10009 chr3 198295559 + 104820952 104821110 THE1B 368 + 211 355 70405 83 27 13 48 chain 6026 chr3 198295559 + 104822936 104823010 THE1B-int 1605 + 1526 1599 80985 69 1 0 4 chain 8745 chr3 198295559 + 104906607 104906776 LTR12C 1709 + 987 1203 73106 97 53 100 19 chain 28966 chr3 198295559 + 105009203 105009670 MER4A1 472 + 0 472 43384 14 7 11 28 2 1 171 1 23 16 28 7 70 1 0 40 21 23 68 chain 3906 chr3 198295559 + 105104012 105104060 MER45R 1085 + 260 308 92084 48 chain 36622 chr3 198295559 + 105110419 105110862 L1PA7 6471 + 6025 6467 37002 292 1 2 140 2 0 8 chain 19322 chr3 198295559 + 105112966 105113256 L1PA10 4194 + 3875 4161 57217 223 36 33 19 1 0 11 chain 20368 chr3 198295559 + 105134451 105134761 HUERS-P3b-int 2065 + 1680 1979 55931 48 3 1 73 37 33 49 4 0 57 1 0 38 chain 53682 chr3 198295559 + 105186579 105187203 L1PA5 6144 + 5098 5729 28330 202 5 3 349 0 1 31 0 8 37 chain 123719 chr3 198295559 + 105191639 105193213 L1PA8 5853 + 4299 5850 14894 264 0 1 22 28 0 29 11 24 352 8 6 97 1 0 33 1 0 12 0 3 420 1 0 48 3 0 68 2 1 8 0 6 6 7 0 45 1 0 16 2 1 89 chain 20967 chr3 198295559 + 105217869 105218132 L1PA6 6164 + 5887 6150 55176 41 0 4 168 5 1 49 chain 24646 chr3 198295559 + 105221539 105221814 AluY 311 + 19 295 49797 113 0 1 162 chain 541700 chr3 198295559 + 105296229 105302219 L1PA3long 6157 + 6 6156 1223 146 0 1 173 0 3 447 0 128 4550 0 26 355 0 2 319 chain 268014 chr3 198295559 + 105309055 105312528 L1PA7 6471 + 3107 6460 7761 99 5 1 39 0 2 55 0 1 226 17 0 273 3 1 31 0 1 148 0 1 19 7 0 212 151 34 247 0 8 277 6 7 166 5 4 372 0 7 135 0 4 111 2 0 26 0 3 228 0 1 285 0 1 328 chain 6933 chr3 198295559 + 105337764 105337860 MLT1A1 405 + 18 112 77841 6 1 0 13 1 0 75 chain 262002 chr3 198295559 + 105405304 105409696 L1PB1 5432 + 1710 5423 7909 80 7 12 476 639 0 134 0 6 7 13 7 60 13 0 10 0 1 21 2 1 299 7 5 5 1 0 57 0 3 113 39 23 335 0 1 132 1 9 66 8 12 147 1 0 42 0 1 154 1 0 78 0 10 272 0 2 490 0 1 116 1 0 20 0 1 72 0 3 109 3 2 9 13 0 24 1 0 6 1 0 7 23 17 48 23 21 40 5 4 15 50 36 14 2 0 24 1 0 21 1 0 13 1 0 19 chain 27536 chr3 198295559 + 105476814 105477171 THE1A 353 + 0 353 45541 109 2 1 92 2 0 77 1 0 74 chain 239331 chr3 198295559 + 105589640 105592187 L1HS 6032 + 1217 3764 8485 2547 chain 68968 chr3 198295559 + 105625168 105625929 L1PA4 6152 + 5382 6143 24218 761 chain 23358 chr3 198295559 + 105728173 105728443 L1PA7 6471 + 4519 4789 51844 270 chain 83000 chr3 198295559 + 105796057 105797304 L1PA15 4387 + 3137 4366 21015 31 3 0 258 1 0 4 0 1 13 1 0 20 0 3 27 1 0 31 0 1 38 3 4 112 0 5 128 0 2 77 4 2 23 0 3 12 1 0 31 0 1 59 36 24 44 0 1 6 5 6 27 1 0 54 1 0 17 20 15 45 0 1 4 6 3 46 1 0 14 5 0 26 1 0 10 chain 62174 chr3 198295559 + 105815454 105816215 L1PA7 6471 + 5717 6470 25824 293 0 2 210 9 1 227 0 2 5 5 1 12 chain 52749 chr3 198295559 + 105961517 105962240 MER4E1 777 + 17 767 28655 136 4 5 125 0 2 10 23 22 89 0 11 40 16 12 26 0 1 10 0 1 34 4 7 35 0 13 171 chain 60031 chr3 198295559 + 105965784 105966544 LTR17 781 + 0 757 26365 59 1 0 97 1 0 171 1 0 430 chain 158067 chr3 198295559 + 105994500 105996220 L1PA3long 6157 + 3539 5258 11871 406 1 0 1313 chain 131369 chr3 198295559 + 106148444 106150038 LTR12C 1709 + 0 1709 13884 463 19 10 29 9 12 136 0 119 68 1 0 275 1 0 112 0 4 275 0 1 123 1 0 82 chain 293623 chr3 198295559 + 106163111 106167048 L1PB1 5432 + 1168 5098 7025 72 1 0 84 29 29 20 46 47 411 0 1 262 0 4 400 8 0 81 6 7 240 1 0 180 0 1 7 1 0 206 10 9 1196 0 1 95 14 12 66 6 7 22 4 1 469 chain 11721 chr3 198295559 + 106236676 106236917 MER61C 433 + 167 433 67363 31 15 12 28 10 36 18 31 35 72 1 0 23 1 0 11 chain 225058 chr3 198295559 + 106257191 106261138 MER61-int 3695 + 50 3303 8887 34 25 30 26 1 2 130 1 0 94 5 4 41 15 1 36 57 23 59 14 13 109 0 1 6 8 3 470 0 5 333 1 6 20 0 3 42 2 0 66 0 4 8 0 5 35 716 0 395 15 61 15 0 2 6 0 3 18 12 10 16 0 3 167 2 0 65 1 2 89 41 43 55 2 0 159 1 0 95 1 0 39 0 1 94 5 7 141 0 1 6 2 0 151 chain 58590 chr3 198295559 + 106258860 106259532 L1PA4 6152 + 5473 6141 26791 351 4 1 67 1 0 249 chain 117207 chr3 198295559 + 106285140 106286762 L1PREC2 3366 + 1301 2952 16021 9 1 0 29 0 2 646 20 38 134 0 1 12 0 7 352 2 0 221 2 0 54 1 0 39 51 60 16 3 1 30 chain 48791 chr3 198295559 + 106307116 106307669 L1PA4 6152 + 5601 6151 30015 7 3 0 543 chain 328821 chr3 198295559 + 106318698 106323559 L1PB1 5432 + 831 5404 6235 11 0 1 285 0 1 5 1 0 121 0 2 21 0 1 115 46 29 47 0 3 71 0 4 951 9 0 268 0 1 67 18 15 300 8 0 572 47 13 121 16 15 238 0 14 43 12 5 284 10 14 159 3 0 85 1 0 97 22 17 82 23 0 37 7 8 73 19 20 5 1 0 51 244 55 11 2 0 51 2 1 16 1 0 44 1 0 15 1 0 4 17 8 17 10 7 14 2 0 24 1 0 4 0 3 14 1 0 13 chain 139766 chr3 198295559 + 106358506 106360221 HERVL-int 5654 + 2614 4329 13115 896 1 2 676 7 6 135 chain 21922 chr3 198295559 + 106362109 106362452 THE1B 368 + 0 368 53942 44 0 15 113 2 1 25 41 51 93 9 10 16 chain 463933 chr3 198295559 + 106522670 106528849 L1PA8A 6298 + 28 6291 4024 6 6 0 6 1 0 16 38 27 17 8 5 14 23 14 12 5 4 8 2 1 12 10 8 8 1 0 3 2 0 15 2 0 4 1 0 12 27 24 13 4 0 9 2 0 38 14 15 11 8 0 42 6 7 30 2 0 12 18 15 76 1 0 54 1 7 6 6 0 190 1 2 309 0 1 14 2 1 32 3 0 9 5 0 106 0 8 132 0 1 353 0 1 5 1 0 466 0 125 174 0 2 71 0 1 387 0 4 345 58 60 12 1 0 15 1 0 34 0 3 111 1 0 13 0 1 84 0 1 204 0 1 4 14 14 269 1 0 348 0 4 110 14 5 496 1 0 6 2 4 237 0 3 50 0 1 5 10 11 313 0 5 433 0 1 115 chain 437845 chr3 198295559 + 106534477 106540050 L1PA8 5853 + 109 5846 4606 14 0 2 107 0 1 72 0 4 281 1 0 64 5 6 467 0 1 58 0 11 204 6 3 150 0 2 5 6 5 109 0 1 187 0 7 148 19 0 67 0 1 72 0 2 5 2 0 324 1 3 54 13 14 235 0 15 91 4 6 13 1 0 28 10 3 171 8 6 228 8 9 4 1 0 827 0 2 5 2 0 136 0 1 623 1 0 35 9 11 143 0 155 163 2 0 41 5 4 49 1 0 47 2 0 69 1 0 8 1 0 52 2 1 19 1 0 86 chain 24204 chr3 198295559 + 106577668 106577998 L1PB2 3958 + 3487 3814 50493 21 0 3 34 1 0 72 1 0 62 1 0 74 2 0 22 1 0 39 chain 137718 chr3 198295559 + 106651649 106653659 L1PREC2 3366 + 1067 3046 13284 232 1 0 6 0 7 115 0 3 77 1 2 77 3 0 179 2 0 275 17 11 27 1 0 57 0 1 103 0 1 4 1 0 28 0 1 240 0 5 30 0 1 203 2 0 47 9 8 32 0 1 10 1 0 4 5 0 9 29 25 16 6 1 16 3 1 13 0 1 15 4 1 11 37 23 20 6 4 36 chain 75666 chr3 198295559 + 106657356 106658380 L1PB2 3958 + 2618 3641 22671 29 9 10 59 0 1 28 0 1 178 1 0 92 0 4 140 0 1 150 1 0 49 12 11 68 2 0 9 7 3 89 1 0 57 0 2 18 1 0 24 chain 553565 chr3 198295559 + 106665293 106671324 L1PA2 6032 + 0 6028 513 257 1 0 1934 1 0 3065 1 0 772 chain 37056 chr3 198295559 + 106678687 106679177 LTR3B_ 500 + 0 500 36706 96 0 8 198 2 1 44 11 12 6 0 2 18 1 0 4 0 1 110 chain 8326 chr3 198295559 + 106688677 106688778 HY3 101 + 0 101 74090 101 chain 4939 chr3 198295559 + 106741622 106741674 L1PA8 5853 + 5761 5813 85937 52 chain 2302 chr3 198295559 + 106741684 106741712 L1PA8 5853 + 5824 5852 104717 28 chain 88307 chr3 198295559 + 106743960 106745011 MER11C 1089 + 0 1073 19985 246 0 9 62 0 4 137 0 2 132 0 1 95 0 4 23 1 2 20 0 1 335 chain 9774 chr3 198295559 + 106756751 106756915 L1MA3 4352 + 4161 4327 70871 7 0 3 32 0 1 11 0 7 12 5 1 25 2 0 22 1 0 6 1 0 27 1 0 12 chain 13401 chr3 198295559 + 106783650 106783822 L1PA7 6471 + 6298 6470 64467 172 chain 430044 chr3 198295559 + 106853508 106859223 L1PA8 5853 + 308 5853 4745 337 0 6 684 2 0 105 0 2 99 311 3 472 10 1 7 2 0 5 0 4 121 0 4 47 0 1 95 5 144 40 0 4 374 19 8 15 13 4 80 0 2 339 0 1 634 1 4 28 1 4 278 10 11 63 1 0 627 0 1 44 0 3 488 13 18 49 1 0 46 2 0 68 2 1 15 8 7 39 2 1 19 2 1 92 chain 5266 chr3 198295559 + 106861464 106861622 L1PB1 5432 + 5281 5422 84354 15 2 0 6 57 45 23 1 0 21 1 0 13 1 0 18 chain 14292 chr3 198295559 + 106892102 106892406 THE1B 368 + 0 347 63207 131 43 87 37 0 27 10 59 31 24 chain 24333 chr3 198295559 + 106941219 106941500 L1PA6 6164 + 5868 6149 50277 281 chain 238525 chr3 198295559 + 106950127 106952741 L1PA3long 6157 + 3538 6157 8505 2171 0 1 392 0 4 51 chain 557691 chr3 198295559 + 106975444 106981476 L1PA2 6032 + 0 6031 260 2985 1 0 3046 chain 65742 chr3 198295559 + 106991194 106991915 L1PA3long 6157 + 5436 6157 25018 721 chain 61252 chr3 198295559 + 106998837 106999591 LTR12 884 + 0 884 26048 79 0 132 166 2 0 40 0 1 291 1 0 175 chain 315042 chr3 198295559 + 107038529 107042591 L1PA7 6471 + 2668 6470 6505 430 1 5 400 277 0 46 0 4 545 0 1 461 1 0 105 5 9 152 1 0 4 5 3 789 3 4 72 0 2 69 0 2 8 6 8 57 0 1 278 1 0 13 0 1 333 chain 32995 chr3 198295559 + 107137099 107137520 MER57A1 433 + 0 424 39517 282 1 0 112 3 7 23 chain 548602 chr3 198295559 + 107144092 107150246 L1PA4 6152 + 6 6151 829 574 1 0 118 7 0 1370 1 0 616 0 2 6 2 0 3459 chain 451073 chr3 198295559 + 107156429 107162421 L1PA8 5853 + 108 5853 4365 89 0 1 104 12 0 255 0 21 43 0 4 422 0 1 321 0 8 81 0 1 76 297 0 213 0 1 344 0 3 21 0 1 504 1 4 31 6 8 64 6 10 130 3 2 8 0 1 7 0 7 20 9 2 39 0 4 101 13 17 94 0 1 42 3 0 374 1 0 456 0 3 322 7 8 411 0 1 13 1 2 98 11 10 98 2 0 12 3 4 76 0 3 455 1 0 48 2 0 19 1 7 54 1 0 52 2 1 19 1 0 93 chain 7293 chr3 198295559 + 107166385 107166493 L1PA10 4194 + 1774 1900 76688 64 8 22 18 0 4 18 chain 30460 chr3 198295559 + 107169441 107169922 L1PA13 3608 + 3054 3518 41618 43 1 7 5 2 0 19 2 0 32 1 0 20 0 1 92 2 0 63 1 0 56 1 0 4 2 0 47 2 0 5 2 0 15 32 28 13 5 0 14 chain 16661 chr3 198295559 + 107232661 107232933 THE1B 368 + 0 368 60198 40 0 15 84 0 4 29 30 106 7 0 3 6 1 0 62 3 2 10 chain 119262 chr3 198295559 + 107232933 107234491 THE1B-int 1605 + 0 1605 15649 108 3 0 5 0 3 287 22 48 25 6 5 194 0 1 4 0 2 695 1 7 95 0 13 113 chain 553442 chr3 198295559 + 107333752 107339866 L1PA3long 6157 + 6 6157 518 1312 0 35 853 1 3 3948 chain 12181 chr3 198295559 + 107355267 107355457 MER30 238 + 25 237 66507 84 4 0 7 2 22 23 10 16 60 chain 27923 chr3 198295559 + 107355652 107356005 LTR46 455 + 0 345 44993 116 6 1 71 3 1 116 1 0 40 chain 6642 chr3 198295559 + 107359881 107360068 MLT1A0 366 + 0 194 78837 29 2 1 18 5 6 34 1 0 14 66 74 18 chain 4659 chr3 198295559 + 107361572 107361627 LTR40a 516 + 21 76 87484 55 chain 5695 chr3 198295559 + 107365197 107365277 MADE1 96 + 0 96 82367 29 0 16 51 chain 14310 chr3 198295559 + 107365278 107365546 L1PB4 2604 + 2303 2570 63183 24 5 1 42 54 52 57 0 6 67 1 0 18 chain 461874 chr3 198295559 + 107470065 107476489 L1PA6 6164 + 3 6152 4084 193 13 14 106 184 13 28 43 16 21 16 17 8 2 0 30 19 0 55 15 5 14 122 46 118 79 58 47 1 18 280 0 3 334 39 40 397 0 1 325 1 0 135 2 0 72 0 1 786 0 1 6 3 0 32 1 0 41 0 3 27 9 6 198 9 12 105 0 3 85 0 1 4 9 7 290 0 3 593 4 5 43 43 42 277 0 7 837 3 0 180 1 21 139 chain 53297 chr3 198295559 + 107501151 107501749 L1PA5 6144 + 5546 6144 28466 218 1 0 46 0 1 333 chain 4566 chr3 198295559 + 107670301 107670357 L1MA5A 2387 + 2233 2289 87991 56 chain 4538 chr3 198295559 + 107715429 107715484 Tigger4b 360 + 298 360 88115 8 0 7 47 chain 38592 chr3 198295559 + 107766648 107767106 L1PA7 6471 + 5902 6364 35644 188 0 1 94 0 3 176 chain 39019 chr3 198295559 + 107818393 107818929 LTR12F 595 + 0 595 35346 100 6 18 28 2 0 21 18 60 78 0 3 206 1 5 76 chain 28614 chr3 198295559 + 107844045 107844355 AluYa5 310 + 0 309 43929 132 2 0 136 0 1 40 chain 47558 chr3 198295559 + 107851086 107851799 L1PB1 5432 + 4696 5377 30458 78 1 0 324 0 1 4 1 2 9 3 0 24 1 0 9 1 0 9 2 0 3 2 0 9 14 12 40 2 1 15 1 0 45 1 0 15 14 1 30 2 0 5 1 0 14 2 0 24 1 0 7 chain 78338 chr3 198295559 + 107888284 107889121 L1HS 6032 + 5195 6032 22019 837 chain 31673 chr3 198295559 + 107937620 107937968 L1PA5 6144 + 5784 6137 40604 251 0 5 97 chain 18227 chr3 198295559 + 107948184 107948412 MER1A 529 + 257 486 58430 201 2 3 25 chain 4292 chr3 198295559 + 108082525 108082580 LTR37A 408 + 313 368 89558 55 chain 10242 chr3 198295559 + 108106791 108106939 L1PA8 5853 + 5704 5850 69916 30 8 7 19 2 1 89 chain 25846 chr3 198295559 + 108124858 108125212 THE1C 375 + 0 363 47945 84 0 1 77 30 37 4 0 1 159 chain 16251 chr3 198295559 + 108148550 108148750 L1PA7 6471 + 6257 6457 60681 200 chain 99352 chr3 198295559 + 108169716 108170920 L1PA8 5853 + 3410 4613 18370 114 0 1 797 6 7 41 13 10 233 chain 11098 chr3 198295559 + 108190131 108190302 THE1D-int 1627 + 1454 1622 68414 46 10 5 18 2 1 53 1 0 12 0 3 25 0 1 4 chain 28474 chr3 198295559 + 108243871 108244234 THE1C 375 + 0 375 44165 41 0 3 65 0 10 230 1 0 26 chain 115842 chr3 198295559 + 108244234 108245809 THE1C-int 1605 + 0 1605 16270 230 16 35 180 0 7 255 1 2 244 54 0 8 0 54 160 2 3 5 2 0 71 7 11 340 chain 28724 chr3 198295559 + 108245809 108246183 THE1C 375 + 0 375 43753 206 1 2 85 0 1 56 1 0 25 chain 546564 chr3 198295559 + 108257680 108263696 L1PA2 6032 + 2 6028 935 255 1 0 107 0 1 1491 1 0 408 0 4 781 1 0 94 0 2 682 1 0 167 0 2 1186 0 4 700 0 1 141 chain 26770 chr3 198295559 + 108268227 108268578 THE1B 368 + 0 368 46584 35 5 20 20 0 4 93 1 0 121 1 0 75 chain 25164 chr3 198295559 + 108275481 108275759 L1PA4 6152 + 3826 4105 49017 135 0 1 143 chain 92169 chr3 198295559 + 108290910 108292226 L1PREC2 3366 + 1702 2988 19314 40 8 8 21 1 0 191 2 1 5 0 2 48 7 0 264 0 2 85 0 2 106 0 1 87 7 10 177 7 5 49 1 0 42 9 5 14 29 21 17 5 8 9 2 0 30 3 0 14 19 5 17 chain 48119 chr3 198295559 + 108349067 108349645 L1P3 4156 + 3383 3956 30253 135 0 1 7 15 9 421 chain 198478 chr3 198295559 + 108366926 108369320 L1PA8 5853 + 408 2789 9757 226 0 6 10 7 1 15 0 1 364 0 1 383 1 0 595 35 8 78 0 4 174 0 4 185 0 1 16 0 4 305 chain 546050 chr3 198295559 + 108369326 108375490 L1PA4 6152 + 0 6152 967 725 5 6 151 12 0 49 4 0 631 26 26 271 0 1 141 1 2 1180 1 0 379 1 0 248 0 1 128 1 0 158 0 2 1776 1 2 119 1 2 136 1 0 18 chain 9592 chr3 198295559 + 108375523 108375636 L1P3 4156 + 3383 3497 71277 8 0 1 105 chain 32139 chr3 198295559 + 108377863 108378308 LTR7B 505 + 0 490 40236 27 5 6 72 0 10 69 6 13 30 0 24 27 0 2 41 0 2 39 1 0 26 0 1 52 2 1 48 chain 51291 chr3 198295559 + 108378802 108379425 L1PA8A 6298 + 5657 6291 29134 15 0 3 216 0 3 79 1 3 117 0 2 98 0 1 97 chain 33234 chr3 198295559 + 108431638 108432057 THE1B-int 1605 + 2 425 39316 120 5 6 113 0 3 181 chain 23671 chr3 198295559 + 108433513 108433867 THE1B 368 + 2 365 51327 42 5 20 110 1 0 26 4 0 101 0 1 4 24 22 37 chain 20041 chr3 198295559 + 108443938 108444157 L1PA3long 6157 + 5937 6157 56325 70 0 1 149 chain 25660 chr3 198295559 + 108496888 108497186 AluYk4 311 + 8 310 48232 34 0 1 235 0 3 29 chain 4029 chr3 198295559 + 108535137 108535201 MER5A 189 + 46 112 91249 29 8 10 27 chain 6278 chr3 198295559 + 108548437 108548603 MER58A 224 + 50 218 80070 37 4 0 7 1 5 18 50 52 49 chain 22205 chr3 198295559 + 108621572 108621932 L1MA2 4263 + 3725 4076 53547 71 13 10 101 0 1 26 33 31 51 0 2 38 7 0 20 chain 6311 chr3 198295559 + 108651523 108651597 Tigger3c 601 + 435 509 79960 74 chain 505114 chr3 198295559 + 108655511 108661232 L1PA4 6152 + 0 5738 2963 245 0 1 160 0 2 753 0 3 72 0 1 185 0 5 34 0 1 144 8 4 336 1 0 1570 1 0 335 0 5 39 0 1 43 1 0 939 6 7 419 0 4 430 chain 114613 chr3 198295559 + 108680736 108682090 L1PA7 6471 + 5092 6468 16456 173 0 4 197 0 5 23 0 13 48 1 0 59 0 3 703 2 4 137 4 0 7 chain 34413 chr3 198295559 + 108696939 108697399 L1PA8 5853 + 5397 5853 38419 40 0 2 82 0 2 41 1 0 45 5 3 68 1 0 10 1 0 50 2 1 10 1 0 9 1 0 93 chain 9811 chr3 198295559 + 108703730 108703836 AluYb8 318 + 196 302 70801 106 chain 5950 chr3 198295559 + 108736938 108737011 LTR18B 584 + 99 172 81279 73 chain 565855 chr3 198295559 + 108749400 108755425 L1HS 6032 + 7 6032 72 6025 chain 4897 chr3 198295559 + 108815633 108815688 L1PA4 6152 + 5253 5308 86167 55 chain 74249 chr3 198295559 + 108815688 108816518 L1PA4 6152 + 5322 6151 23016 496 1 0 333 chain 46057 chr3 198295559 + 108933721 108934337 L1PA8 5853 + 5235 5847 31037 284 0 3 40 1 0 46 2 0 71 1 0 7 1 0 53 3 2 19 2 1 86 chain 20258 chr3 198295559 + 108937797 108938038 AluSg7 307 + 7 249 56068 123 1 2 117 chain 19585 chr3 198295559 + 108948134 108948477 MSTA 426 + 0 401 56915 100 6 28 6 0 3 22 0 4 36 2 1 4 5 0 11 35 50 31 7 27 78 chain 78141 chr3 198295559 + 108981800 108982737 L1PA6 6164 + 5048 6162 22060 263 1 5 191 0 2 189 1 0 41 1 175 78 0 1 4 1 0 7 8 6 152 chain 3452 chr3 198295559 + 109001369 109001408 MADE1 96 + 49 88 95632 39 chain 88079 chr3 198295559 + 109075939 109076985 L1PA7 6471 + 5416 6470 20032 198 0 3 192 0 3 160 16 16 468 0 2 12 chain 75429 chr3 198295559 + 109087226 109088282 L1PA14 3548 + 2426 3456 22737 109 2 1 45 0 1 107 1 0 248 4 2 9 1 0 5 2 0 44 3 1 7 2 0 105 4 0 21 2 0 6 1 0 17 0 1 66 1 0 110 1 0 11 5 1 18 0 1 17 4 2 12 1 0 5 1 0 17 1 0 41 chain 161269 chr3 198295559 + 109123339 109125140 SVA_D 2077 + 6 2073 11666 4 1 0 6 1 0 6 1 0 6 1 0 9 1 0 853 0 269 28 0 1 256 0 1 628 chain 16248 chr3 198295559 + 109135112 109135362 L1PA8 5853 + 5610 5853 60686 60 0 1 8 1 0 9 21 19 28 3 0 5 2 1 19 1 0 93 chain 118648 chr3 198295559 + 109163673 109164963 L1PA3long 6157 + 4868 6157 15783 277 1 0 1012 chain 31692 chr3 198295559 + 109190302 109190726 MER4A1 472 + 0 454 40583 46 1 0 99 0 6 44 1 5 20 0 1 5 2 22 206 chain 567752 chr3 198295559 + 109199872 109205903 L1HS 6032 + 0 6032 21 74 0 1 5957 chain 157867 chr3 198295559 + 109218604 109220510 L1P2 5180 + 5 1921 11889 58 1 2 85 1 0 52 1 0 45 1 0 208 9 8 52 1 0 272 0 15 47 1 0 1072 chain 39665 chr3 198295559 + 109220510 109220981 L1PA6 6164 + 5685 6156 34912 130 2 3 8 1 0 330 chain 318062 chr3 198295559 + 109236264 109241095 L1PA8 5853 + 1621 5853 6443 113 0 1 171 16 18 877 19 1 67 0 2 5 11 6 47 0 4 24 0 3 42 8 9 58 15 7 118 0 4 22 0 1 158 0 1 62 0 3 31 9 51 118 317 0 409 4 0 286 2 0 76 0 3 345 354 43 190 0 1 12 0 3 74 0 1 114 11 13 117 10 10 55 0 2 45 10 0 120 1 0 44 2 0 71 1 0 18 0 5 26 0 1 14 1 0 17 1 0 93 chain 7086 chr3 198295559 + 109297564 109297689 L1MC2 1988 + 1142 1274 77307 25 28 35 72 chain 2945 chr3 198295559 + 109299925 109299961 L1MC2 1988 + 1861 1897 100453 36 chain 37916 chr3 198295559 + 109393441 109393916 LTR2B 499 + 9 499 36124 5 1 0 60 3 0 37 0 19 178 0 1 8 1 0 182 chain 12322 chr3 198295559 + 109418867 109419005 L1PA7 6471 + 6328 6466 66262 138 chain 34336 chr3 198295559 + 109447156 109447704 L1M1 2793 + 2087 2602 38468 13 4 7 237 0 1 87 11 9 31 67 32 98 chain 20755 chr3 198295559 + 109462380 109462727 THE1D 372 + 5 360 55428 99 1 0 33 49 54 19 13 14 49 0 3 84 chain 492370 chr3 198295559 + 109521775 109527483 L1PA5 6144 + 0 6128 3361 323 0 5 255 0 1 954 0 1 773 0 1 78 0 404 147 0 1 176 0 4 53 1 0 110 0 3 740 1 0 1237 0 1 724 1 2 135 chain 522024 chr3 198295559 + 109538206 109544326 L1PA5 6144 + 0 6141 2179 182 0 14 500 1 2 471 9 0 143 0 1 480 1 0 584 0 3 327 0 1 1067 2 13 141 2 3 1361 5 9 541 0 2 290 7 0 6 chain 74433 chr3 198295559 + 109583303 109584402 MER11A 1151 + 0 1151 22978 79 7 15 134 1 0 30 0 2 34 0 11 45 51 0 182 0 12 73 0 5 60 6 9 11 3 4 30 7 11 69 0 2 16 1 59 91 15 14 87 7 6 60 chain 2126 chr3 198295559 + 109583634 109583664 MER11A 1151 + 314 344 103719 30 chain 39035 chr3 198295559 + 109589001 109589559 L1PB4 2604 + 1437 2003 35328 145 0 1 130 19 18 20 0 1 41 6 7 77 0 4 8 0 1 4 7 8 101 chain 4555 chr3 198295559 + 109595406 109595465 MADE1 96 + 40 96 88042 5 3 0 51 chain 115398 chr3 198295559 + 109601947 109603792 L1PB1 5432 + 3604 5422 16328 118 6 10 230 6 5 71 0 35 22 5 6 129 3 0 147 4 3 86 1 0 19 4 8 11 86 15 86 0 4 17 3 0 184 1 0 39 9 12 77 1 29 22 0 3 33 0 1 68 21 23 17 2 0 10 1 0 12 2 0 3 2 0 9 2 0 52 2 1 16 1 0 43 1 0 16 23 12 18 34 29 15 1 0 21 1 0 13 6 5 13 chain 4898 chr3 198295559 + 109624210 109624323 MER2 342 + 14 135 86159 24 40 45 38 0 3 11 chain 25598 chr3 198295559 + 109641138 109641471 LTR17 781 + 0 324 48317 153 4 3 56 8 0 112 chain 524248 chr3 198295559 + 109647591 109654371 L1PA7 6471 + 0 6461 2079 253 5 6 23 0 2 115 0 1 3 14 0 56 0 1 302 2 4 169 0 6 208 2 6 265 0 1 42 14 12 284 2 1 871 2 1 92 0 1 521 2 1 256 1 0 19 2 1 81 4 2 326 0 3 893 8 0 316 2 0 187 1 7 81 0 1 197 5 4 79 0 2 96 318 0 40 0 5 370 1 0 51 2 0 197 chain 511152 chr3 198295559 + 109664747 109670938 L1PA6 6164 + 0 6156 2705 371 0 8 11 14 13 97 11 10 47 3 4 62 0 1 57 0 1 2377 10 2 128 0 1 390 44 0 594 0 1 6 2 1 113 2 0 23 0 1 510 4 8 481 0 4 654 1 0 7 0 1 68 19 19 85 chain 14613 chr3 198295559 + 109684824 109685030 THE1D 372 + 0 187 62783 75 19 0 112 chain 147389 chr3 198295559 + 109710664 109712335 L1PA4 6152 + 4467 6140 12519 1224 0 2 447 chain 17105 chr3 198295559 + 109740208 109740402 L1PA3long 6157 + 5963 6157 59687 194 chain 8468 chr3 198295559 + 109748468 109748582 MER2B 336 + 0 114 73758 68 0 1 28 1 0 17 chain 491386 chr3 198295559 + 109759829 109765285 L1PA3long 6157 + 1 6157 3388 66 0 550 165 0 128 525 0 1 1261 1 0 2076 0 22 1362 chain 462430 chr3 198295559 + 109795219 109800906 L1PA7 6471 + 761 6465 4067 399 0 2 280 4 5 701 0 1 107 6 5 375 1 2 141 1 0 467 0 1 171 0 2 555 0 3 24 1 0 230 0 1 213 1 2 100 0 37 49 0 1 642 0 1 24 0 1 9 42 23 13 0 1 272 0 3 761 1 3 22 0 19 9 36 0 21 3 0 6 chain 2158 chr3 198295559 + 109822958 109822984 L1PA7 6471 + 5594 5620 105499 26 chain 27115 chr3 198295559 + 109822986 109823303 L1PA7 6471 + 5621 5941 46103 79 1 4 237 chain 25698 chr3 198295559 + 109916232 109916574 THE1A 353 + 0 353 48176 26 0 1 53 3 2 6 0 1 20 2 1 96 0 9 78 0 2 58 chain 142663 chr3 198295559 + 109940571 109942163 L1PA4 6152 + 4555 6152 12879 749 0 4 69 0 1 774 chain 52371 chr3 198295559 + 109990968 109991797 L1PB1 5432 + 4626 5430 28766 50 0 5 123 0 4 295 1 0 11 1 0 14 8 7 11 1 0 11 5 1 9 2 0 53 18 16 44 1 0 16 1 0 4 19 8 18 6 4 16 2 0 27 1 0 18 1 0 13 1 0 16 2 0 10 chain 371295 chr3 198295559 + 110009316 110013821 L1PA7 6471 + 1949 6470 5630 97 0 1 120 0 14 11 13 0 293 1 0 35 0 2 109 1 2 117 0 2 137 0 4 28 4 6 557 28 25 235 0 2 35 0 1 1043 1 0 197 0 1 108 0 5 485 1 0 849 chain 16853 chr3 198295559 + 110022814 110023039 MLT2A1 477 + 1 233 59969 47 0 2 90 2 3 26 1 5 59 chain 160266 chr3 198295559 + 110023044 110025444 L1PB1 5432 + 3029 5296 11734 361 1 2 33 1 2 129 1 0 5 13 14 52 1 2 92 47 16 74 0 1 225 13 12 340 7 8 88 7 34 22 29 30 55 3 0 458 0 1 18 0 3 5 127 3 20 1 0 13 16 11 9 2 0 52 4 3 15 1 0 44 1 0 15 chain 28873 chr3 198295559 + 110086960 110087316 L1PA2 6032 + 5678 6027 43524 191 29 22 136 chain 35768 chr3 198295559 + 110120450 110120830 L1HS 6032 + 2856 3236 37553 380 chain 37143 chr3 198295559 + 110125544 110126004 MER4A1 472 + 9 470 36650 50 0 1 410 chain 91541 chr3 198295559 + 110203969 110205017 L1PA5 6144 + 2765 3815 19407 180 0 2 229 1 0 192 1 2 445 chain 21663 chr3 198295559 + 110205719 110205967 AluSc 308 + 5 253 54274 248 chain 143514 chr3 198295559 + 110358125 110360196 L1PA7 6471 + 4420 6469 12807 143 9 8 7 0 1 95 0 2 57 0 1 251 1 0 112 22 0 114 3 2 140 0 1 59 252 256 14 8 5 767 3 0 14 chain 552842 chr3 198295559 + 110440086 110446113 L1PA2 6032 + 1 6029 555 1111 0 1 4916 chain 326360 chr3 198295559 + 110494714 110498864 L1P3 4156 + 3 4136 6277 244 16 15 60 1 0 65 8 0 315 8 0 7 8 16 108 0 1 134 8 2 112 2 1 293 2 1 358 0 1 109 1 2 313 0 1 37 1 2 97 3 2 335 1 3 214 2 1 641 0 1 6 3 0 285 0 1 321 2 0 9 2 1 19 chain 91121 chr3 198295559 + 110500000 110501478 L1PA7 6471 + 5278 6438 19479 98 11 4 241 1 0 213 308 0 468 23 21 115 chain 25340 chr3 198295559 + 110525640 110526010 THE1B 368 + 0 368 48728 13 2 0 26 1 6 127 3 1 23 15 13 85 1 0 74 chain 39224 chr3 198295559 + 110567370 110567832 LTR2 463 + 0 463 35197 360 14 15 88 chain 34287 chr3 198295559 + 110573427 110573878 L1PA7 6471 + 6028 6459 38501 217 27 6 133 0 1 74 chain 4111 chr3 198295559 + 110640241 110640284 tRNA-Gln-CAG 43 + 0 43 90699 43 chain 22579 chr3 198295559 + 110662859 110663220 THE1D 372 + 6 372 53008 154 31 34 16 13 14 114 8 9 25 chain 47868 chr3 198295559 + 110667911 110668541 L1PBa 3878 + 2215 2869 30340 481 5 12 6 0 3 28 0 15 104 1 0 5 chain 11653 chr3 198295559 + 110684101 110684267 LTR7B 505 + 268 436 67475 16 5 7 116 0 1 4 1 0 24 chain 58007 chr3 198295559 + 110763876 110764740 L1PB2 3958 + 2987 3838 26962 290 0 1 29 2 0 26 8 9 14 6 5 11 1 0 67 2 0 12 4 0 94 1 0 38 5 6 29 1 0 63 1 0 51 32 30 12 6 5 59 chain 83529 chr3 198295559 + 110768853 110769943 L1P2 5180 + 2 1111 20908 147 1 0 98 1 0 261 11 9 218 0 1 4 2 1 46 1 0 6 2 1 139 0 25 153 chain 28032 chr3 198295559 + 110819371 110819669 AluYa5 310 + 10 308 44810 298 chain 183040 chr3 198295559 + 110843614 110845843 L1PA7 6471 + 4222 6458 10436 90 1 2 107 2 1 244 0 8 517 0 1 163 12 0 253 6 8 134 0 1 58 0 3 373 0 3 244 0 1 25 chain 24717 chr3 198295559 + 110875793 110876151 THE1B 368 + 0 368 49700 114 0 1 5 2 1 48 1 0 29 35 45 62 0 1 62 chain 20341 chr3 198295559 + 110880683 110881040 THE1A 353 + 1 353 55961 12 2 0 34 7 8 23 17 16 17 0 2 6 17 15 54 12 10 81 1 0 74 chain 155097 chr3 198295559 + 110888814 110890548 L1HS 6032 + 2 1728 12049 72 0 1 181 1 0 455 7 0 883 1 0 134 chain 36237 chr3 198295559 + 110898942 110899388 L1PA8 5853 + 4635 5084 37246 370 5 4 44 0 4 27 chain 29666 chr3 198295559 + 110984984 110985402 LTR3B 427 + 0 423 42414 177 6 0 61 6 7 55 0 3 26 0 6 24 13 14 50 chain 120917 chr3 198295559 + 110998305 111000000 L1P3 4156 + 3 1693 15359 241 65 58 20 1 0 24 1 0 45 0 3 14 43 25 239 28 48 631 2 1 341 chain 389592 chr3 198295559 + 111000000 111004748 L1PA7 6471 + 1696 6469 5327 251 1 0 480 0 1 63 1 0 29 0 2 118 0 1 183 5 7 175 0 1 226 0 4 292 1 0 96 0 7 548 0 2 78 0 1 89 0 3 594 1 2 339 0 7 44 8 0 148 0 1 126 0 3 685 8 9 98 0 1 49 2 0 10 chain 60591 chr3 198295559 + 111017948 111018710 L1PA5 6144 + 5413 6137 26204 302 0 2 150 41 1 113 6 6 150 chain 556275 chr3 198295559 + 111018716 111024745 L1PA2 6032 + 1 6029 346 3060 6 5 2963 chain 509652 chr3 198295559 + 111056363 111062837 L1PA7 6471 + 3 6468 2787 191 3 4 74 7 6 54 6 7 663 6 5 381 5 0 7 0 5 406 1 0 229 1 0 598 1 0 229 0 1 225 8 12 384 1 2 11 4 0 175 1 0 510 0 2 74 1 2 176 12 13 219 0 4 947 8 9 336 10 10 428 7 0 12 14 5 11 11 14 10 3 0 14 chain 117963 chr3 198295559 + 111095937 111097496 THE1B-int 1605 + 0 1597 15893 184 0 3 245 24 49 165 4 0 35 0 1 48 0 1 430 0 3 110 10 0 34 11 30 259 chain 24056 chr3 198295559 + 111097504 111097863 THE1B 368 + 0 356 50720 39 1 16 117 1 0 26 1 3 31 0 2 57 3 0 14 14 0 3 4 0 48 chain 3289 chr3 198295559 + 111101714 111101753 MER3 215 + 153 193 97110 6 0 1 33 chain 10675 chr3 198295559 + 111186198 111186461 L1PREC2 3366 + 2712 2951 69089 38 4 2 52 2 0 13 5 4 28 1 0 5 3 0 11 49 39 5 2 0 12 13 10 20 chain 28596 chr3 198295559 + 111214733 111215106 THE1C 375 + 0 375 43959 89 0 1 35 13 14 236 chain 57190 chr3 198295559 + 111319226 111320144 L1PA15 4387 + 3443 4351 27199 365 1 0 4 1 0 11 22 0 10 4 7 49 2 0 44 1 0 67 0 1 16 2 30 57 1 0 68 0 1 4 1 0 7 2 1 16 10 6 10 1 0 45 17 14 17 0 2 19 25 18 19 chain 380890 chr3 198295559 + 111373926 111379380 L1PB1 5432 + 47 5430 5464 210 0 4 141 6 9 141 0 1 55 1 0 24 0 1 196 14 5 34 0 1 249 1 2 267 15 10 30 0 17 5 17 0 282 0 1 497 0 16 249 20 19 320 16 16 210 0 2 261 1 0 4 3 4 303 70 11 19 8 9 54 4 6 495 0 1 398 3 0 18 0 1 60 0 2 81 0 1 100 0 1 87 77 87 39 11 4 7 1 0 20 1 0 13 1 0 11 15 9 53 2 1 16 2 1 42 1 0 15 78 60 15 1 0 21 15 13 15 2 0 11 chain 432132 chr3 198295559 + 111379866 111385371 L1PA8 5853 + 50 5853 4720 21 2 0 11 1 0 13 49 13 36 0 1 156 22 10 514 0 320 364 5 6 166 0 1 224 0 2 109 0 1 8 11 4 73 0 1 467 0 1 255 16 17 85 0 4 24 0 12 567 0 7 364 0 2 174 1 2 319 1 0 103 0 1 59 0 1 12 0 4 140 0 1 285 6 4 260 0 4 284 1 0 46 2 0 71 1 0 9 1 0 52 2 1 19 1 0 93 chain 174153 chr3 198295559 + 111388834 111390764 L1PA3long 6157 + 4226 6157 10891 565 0 1 1365 chain 6535 chr3 198295559 + 111429690 111429793 MSTA 426 + 282 383 79211 28 1 0 33 13 12 28 chain 33299 chr3 198295559 + 111455686 111456168 LTR12D 1347 + 404 1334 39261 98 15 88 86 0 42 102 0 1 95 14 13 8 0 333 64 chain 33237 chr3 198295559 + 111486827 111487223 L1PA8A 6298 + 5896 6291 39310 281 4 3 111 chain 235905 chr3 198295559 + 111490155 111492745 L1PA3long 6157 + 3574 6157 8573 112 0 1 644 10 0 16 0 1 581 0 1 1227 chain 71683 chr3 198295559 + 111524151 111525159 MER11A 1151 + 7 1151 23615 71 8 16 14 0 2 31 9 98 55 4 0 146 0 1 93 12 13 135 6 9 52 0 4 61 2 1 12 5 38 292 chain 87619 chr3 198295559 + 111526856 111528260 HERVK11-int 2540 + 911 2238 20118 57 25 17 16 78 61 4 1 0 63 1 0 48 4 3 9 8 5 15 28 17 27 12 1 35 21 1 85 4 5 347 8 3 105 1 0 77 4 5 107 4 3 77 5 6 128 chain 79874 chr3 198295559 + 111529450 111530464 MER11A 1151 + 1 1151 21647 54 0 99 140 4 0 149 0 1 93 0 1 144 6 9 52 0 4 61 2 1 12 5 38 292 chain 3585 chr3 198295559 + 111566916 111566988 L1MC1 2226 + 2129 2198 94543 6 1 0 14 10 9 27 1 0 13 chain 325661 chr3 198295559 + 111627975 111632616 L1PA11 4918 + 6 4629 6287 36 2 0 33 7 4 15 48 18 13 5 3 45 6 5 23 21 18 235 28 31 77 2 5 27 0 10 43 0 1 102 1 0 44 1 0 77 6 8 50 3 4 4 1 0 471 4 1 84 0 1 117 7 8 92 2 0 102 2 1 154 0 3 116 0 1 158 1 0 37 0 1 20 0 4 662 0 8 125 11 16 94 4 3 70 0 1 135 6 5 56 0 3 43 0 4 127 6 0 13 0 19 350 0 7 56 0 1 222 5 0 78 1 0 69 2 0 11 83 68 13 1 0 14 6 0 4 1 0 8 1 0 5 19 13 18 chain 186517 chr3 198295559 + 111642851 111645482 L1PB1 5432 + 2842 5395 10274 77 0 1 149 12 1 159 19 20 33 0 2 258 0 2 189 7 0 16 0 1 299 0 1 62 0 1 28 0 15 135 0 7 57 0 2 107 63 8 149 0 1 10 8 4 168 5 11 288 5 0 10 7 0 21 1 0 13 15 11 9 2 0 53 2 1 16 1 0 5 1 0 38 1 0 16 23 12 19 33 28 15 1 0 21 1 0 4 chain 2988 chr3 198295559 + 111795018 111795055 tRNA-Cys-TGY 72 + 0 37 99992 37 chain 24706 chr3 198295559 + 111814117 111814486 MLT2A1 477 + 0 383 49724 21 0 12 75 7 10 50 5 2 11 0 1 5 4 3 13 12 14 166 chain 64371 chr3 198295559 + 111857683 111858469 L1PA8 5853 + 5073 5853 25334 489 1 0 46 2 0 10 0 1 57 14 12 55 1 0 17 1 0 93 chain 70636 chr3 198295559 + 112036745 112037828 MER11B 1079 + 0 1074 23835 423 7 15 19 18 17 22 61 50 15 0 1 156 1 0 23 13 3 13 40 44 24 0 1 53 0 1 169 2 1 24 chain 157101 chr3 198295559 + 112205149 112206996 L1PA6 6164 + 4250 6156 11935 476 0 50 271 0 1 270 0 4 170 0 4 92 0 2 428 1 0 12 1 0 126 chain 536541 chr3 198295559 + 112211228 112217359 L1PA5 6144 + 0 6142 1530 163 0 1 2344 1 0 694 1 0 202 0 1 523 0 1 420 0 4 1114 0 2 616 0 4 53 chain 43119 chr3 198295559 + 112242845 112243476 L1PA16 3655 + 2920 3566 32702 205 6 8 10 8 1 56 1 0 18 21 30 43 2 0 205 1 0 4 8 23 43 chain 23864 chr3 198295559 + 112382271 112382626 THE1A 353 + 0 353 51007 15 2 0 32 0 1 38 9 8 8 1 0 5 17 18 113 0 1 39 1 0 75 chain 34341 chr3 198295559 + 112396670 112397111 MER4A1 472 + 0 451 38461 59 0 1 67 1 9 115 11 12 188 chain 35742 chr3 198295559 + 112399750 112400198 LTR7 482 + 0 482 37569 225 0 1 35 0 31 127 12 14 49 chain 21116 chr3 198295559 + 112430835 112431175 THE1B 368 + 0 367 54990 44 13 28 97 1 0 99 47 60 39 chain 15544 chr3 198295559 + 112463006 112463381 L1MC1 2226 + 1762 2127 61592 82 9 10 33 7 1 27 1 0 64 26 21 15 10 22 9 1 0 4 29 27 6 5 0 20 9 7 12 1 0 5 chain 27952 chr3 198295559 + 112479979 112480399 LTR7B 505 + 0 495 44943 108 0 10 66 35 11 17 0 88 65 1 0 67 0 3 6 14 13 41 chain 60959 chr3 198295559 + 112494123 112494864 L1PA8A 6298 + 5546 6290 26121 234 0 3 343 0 1 143 5 4 16 chain 6780 chr3 198295559 + 112506669 112506785 MER20 218 + 99 218 78382 54 7 8 33 10 12 12 chain 13061 chr3 198295559 + 112512996 112513181 LTR8 732 + 0 195 65005 15 0 1 13 12 21 145 chain 18589 chr3 198295559 + 112518995 112519355 THE1B 368 + 0 368 58008 12 0 4 51 0 1 39 9 10 51 4 5 11 66 68 54 7 6 56 chain 30130 chr3 198295559 + 112554199 112554626 LTR7B 505 + 0 505 41912 108 0 10 56 0 38 13 3 27 26 0 2 85 2 1 34 0 6 35 14 13 51 chain 67549 chr3 198295559 + 112556264 112557035 SVA_D 2077 + 1240 2076 24551 76 24 85 575 0 4 96 chain 45673 chr3 198295559 + 112615536 112616090 MER41A 554 + 0 554 31223 554 chain 369061 chr3 198295559 + 112693694 112705896 L1PB1 5432 + 19 5424 5677 123 9 16 7 7 0 83 1 3 153 1 0 39 6880 141 17 2 1 547 0 7 15 2 0 231 2 0 4 15 0 103 0 6 34 0 4 16 4 6 35 0 1 120 7 6 184 1 2 564 17 8 219 8 7 95 1 0 9 0 1 16 5 0 121 0 1 323 28 27 52 1 2 5 1 0 11 0 1 4 2 1 132 10 8 147 3 4 45 44 18 191 7 8 160 0 5 94 1 4 241 1 0 28 0 4 142 0 1 182 3 11 168 0 1 119 12 5 6 1 0 24 1 0 9 1 0 4 0 1 4 17 11 53 2 1 12 9 8 38 8 7 10 4 1 11 10 1 18 3 1 4 1 0 14 2 0 24 1 0 17 7 6 11 1 0 16 1 0 4 chain 340233 chr3 198295559 + 112694117 112700649 HERVL-int 5654 + 1395 5654 6063 424 1 2 10 6 7 67 0 2 30 0 1 382 2 0 359 2336 23 363 6 5 180 0 1 48 0 2 665 0 2 527 7 19 59 0 1 16 1 5 307 0 3 27 0 8 161 9 11 112 5 6 145 0 2 277 chain 17843 chr3 198295559 + 112700649 112700907 MLT2A1 477 + 0 263 58836 131 19 20 17 1 5 90 chain 558807 chr3 198295559 + 112724125 112730267 L1PA3long 6157 + 6 6157 205 244 8 10 780 1 0 2148 0 1 77 0 2 96 1 0 582 0 1 695 0 5 1510 chain 22992 chr3 198295559 + 112735310 112735598 AluSc 308 + 8 295 52372 270 2 1 16 chain 27535 chr3 198295559 + 112752088 112752488 LTR22A 463 + 0 420 45543 44 13 21 28 1 2 126 16 26 44 0 1 128 chain 27971 chr3 198295559 + 112756258 112756632 THE1C 375 + 0 375 44916 64 14 15 296 chain 58164 chr3 198295559 + 112842232 112843022 MER11A 1151 + 0 886 26914 65 0 99 66 0 4 60 4 0 121 4 0 28 0 1 94 0 1 77 0 2 5 3 16 45 5 6 145 25 8 43 chain 24818 chr3 198295559 + 112860230 112860522 AluSp 311 + 4 296 49558 292 chain 77103 chr3 198295559 + 112877495 112878411 L1PA7 6471 + 5555 6470 22289 66 1 0 33 0 1 94 1 2 42 0 2 422 1 0 81 4 1 171 chain 31418 chr3 198295559 + 112885486 112885961 MER9a3 513 + 0 513 40800 18 0 2 91 0 1 67 10 11 15 0 1 50 11 28 10 3 17 97 24 26 79 chain 6329 chr3 198295559 + 112905613 112905691 L1PB1 5432 + 4899 4977 79895 78 chain 375855 chr3 198295559 + 112911600 112915811 L1PA4 6152 + 1939 6151 5555 63 0 1 317 1 0 2106 0 1 1263 1 2 206 2 1 252 chain 298858 chr3 198295559 + 112916560 112920497 L1PA7 6471 + 1899 6451 6865 87 8 1 339 5 6 30 0 903 81 1 0 47 1 2 116 307 0 36 0 24 27 11 8 325 6 5 71 1 2 38 2 1 33 3 0 477 1 0 397 1 0 394 0 1 275 0 4 164 0 2 342 0 3 311 chain 11755 chr3 198295559 + 112920497 112920624 L1PA2 6032 + 5905 6032 67116 127 chain 36993 chr3 198295559 + 112952376 112952796 L1PA3long 6157 + 5737 6157 36738 420 chain 127429 chr3 198295559 + 112963227 112964799 THE1B-int 1605 + 0 1600 14363 67 0 3 362 0 25 52 1 0 876 0 1 214 chain 18755 chr3 198295559 + 112964804 112965122 THE1B 368 + 0 356 57838 39 1 16 22 0 14 81 2 1 25 60 70 88 chain 26265 chr3 198295559 + 112989562 112989965 LTR7B 505 + 1 490 47327 67 0 9 13 13 27 58 15 77 26 0 2 82 1 0 33 0 1 45 14 13 36 chain 3213 chr3 198295559 + 113008544 113008655 L1MA3 4352 + 4236 4346 97770 24 2 0 10 39 44 7 2 0 9 2 0 16 chain 100517 chr3 198295559 + 113049755 113050860 L1PA3long 6157 + 5056 6157 18233 328 1 0 510 3 0 263 chain 4597 chr3 198295559 + 113082330 113082384 L1PA15 4387 + 4049 4103 87804 54 chain 42554 chr3 198295559 + 113149459 113149996 MER41A 554 + 0 554 33031 297 5 22 235 chain 52993 chr3 198295559 + 113164065 113164697 L1PA8 5853 + 5227 5853 28578 381 2 0 69 1 0 12 1 0 54 1 0 17 1 0 93 chain 11353 chr3 198295559 + 113260794 113260986 MER1B 344 + 158 339 68003 37 3 0 25 11 7 41 17 13 58 chain 120280 chr3 198295559 + 113311622 113313545 THE1A-int 1579 + 0 1574 15486 272 0 1 146 349 0 125 34 11 58 1 2 29 24 27 284 0 3 254 0 15 347 chain 101997 chr3 198295559 + 113318066 113319695 L1P4a 3072 + 154 1757 18062 122 1 0 5 0 9 8 64 22 37 0 1 41 87 98 44 0 3 130 0 1 170 8 6 41 6 8 110 65 56 68 1 2 5 2 0 49 2 4 130 1 0 358 2 3 72 chain 30800 chr3 198295559 + 113322315 113322793 L1PA16 3655 + 2799 3302 41307 75 3 24 22 1 0 62 2 3 106 30 35 78 8 7 91 chain 52177 chr3 198295559 + 113346019 113347016 LTR12 884 + 0 884 28825 24 1 0 53 66 0 278 280 0 23 2 0 209 0 236 61 chain 20507 chr3 198295559 + 113346441 113346686 LTR12 884 + 91 336 54152 245 chain 16127 chr3 198295559 + 113354826 113355036 L1PBa 3878 + 163 370 60861 50 1 0 24 3 1 132 chain 6390 chr3 198295559 + 113355091 113355210 L1PB1 5432 + 5311 5422 79702 15 13 10 10 2 0 24 1 0 34 1 0 14 1 0 4 chain 10971 chr3 198295559 + 113355648 113355777 L1PA6 6164 + 6031 6162 68594 120 0 2 9 chain 522092 chr3 198295559 + 113366591 113372736 L1PA6 6164 + 0 6162 2176 282 4 5 280 1 0 131 0 4 452 4 0 100 1 0 1078 0 2 67 0 3 175 0 4 210 0 4 38 0 1 347 1 2 4 0 1 57 10 6 27 0 2 779 1 3 13 1 0 631 0 1 423 0 3 261 1 0 766 chain 5270 chr3 198295559 + 113374542 113374616 L1MB2 1706 + 1246 1317 84337 33 5 2 36 chain 21434 chr3 198295559 + 113421007 113421341 L1PA17 2846 + 2371 2697 54599 128 4 0 18 34 32 83 1 0 18 1 0 47 chain 29998 chr3 198295559 + 113426305 113426680 THE1C 375 + 0 375 42056 163 0 1 185 1 0 26 chain 28057 chr3 198295559 + 113446865 113447219 THE1A 353 + 0 353 44780 111 1 0 242 chain 105454 chr3 198295559 + 113458185 113459428 SVA_C 1631 + 7 1622 17622 10 0 4 15 0 4 13 1 0 4 16 8 149 0 1 451 0 376 572 4 0 8 chain 4432 chr3 198295559 + 113463448 113463577 L1MB7 1623 + 1369 1475 88712 7 1 0 34 50 31 8 3 0 26 chain 556587 chr3 198295559 + 113471807 113477946 L1PA3long 6157 + 6 6157 323 312 0 7 2230 1 0 540 0 6 70 1 0 1188 0 1 768 0 1 255 1 0 773 chain 22529 chr3 198295559 + 113486230 113486508 L1P1 4361 + 3009 3292 53072 41 0 1 169 7 11 61 chain 15685 chr3 198295559 + 113495962 113496186 MER30 238 + 0 238 61417 15 7 25 70 5 4 85 3 0 39 chain 12640 chr3 198295559 + 113510158 113510350 L1PA10 4194 + 3976 4161 65732 33 8 4 47 0 1 55 3 0 34 2 1 10 chain 27472 chr3 198295559 + 113515338 113515644 AluYk4 311 + 0 306 45609 306 chain 4904 chr3 198295559 + 113621905 113621964 MER3 215 + 94 153 86134 59 chain 16612 chr3 198295559 + 113632710 113632899 7SLRNA 320 + 7 196 60255 189 chain 13477 chr3 198295559 + 113637878 113638036 LTR12D 1347 + 0 158 64344 158 chain 26814 chr3 198295559 + 113706741 113707487 L1PA15 4387 + 3656 4103 46517 157 2 0 8 0 1 8 12 9 52 3 1 28 40 39 17 297 5 122 chain 21566 chr3 198295559 + 113724692 113725044 THE1C 375 + 0 373 54417 37 0 5 21 8 10 11 1 12 46 7 11 21 1 0 6 18 19 151 1 0 23 chain 3307 chr3 198295559 + 113893735 113893777 MER94 134 + 79 123 96948 5 0 2 37 chain 14870 chr3 198295559 + 113992564 113992729 L1PA4 6152 + 5978 6143 62423 165 chain 35861 chr3 198295559 + 113996571 113997024 L1PA8 5853 + 5394 5840 37494 170 1 0 44 2 0 70 2 1 7 1 0 54 3 2 18 1 0 80 chain 13258 chr3 198295559 + 114017689 114017838 L1PA8A 6298 + 6135 6284 64696 149 chain 181681 chr3 198295559 + 114022825 114024850 L1PA4 6152 + 4104 6141 10516 4 0 1 235 0 4 989 0 4 11 0 3 786 chain 7333 chr3 198295559 + 114039086 114039220 Tigger3b 1229 + 197 337 76562 55 2 3 28 1 6 22 6 9 8 3 0 9 chain 42524 chr3 198295559 + 114104504 114105141 Tigger3b 1229 + 23 655 33050 114 7 0 80 0 1 60 5 0 9 5 12 14 15 18 7 2 0 215 1 0 9 12 0 11 1 12 70 chain 21380 chr3 198295559 + 114106457 114106698 L1PA5 6144 + 5903 6144 54662 241 chain 74464 chr3 198295559 + 114131610 114132572 L1PA8 5853 + 4887 5853 22971 116 1 6 77 0 1 4 1 0 35 0 1 61 1 0 26 0 4 60 0 2 284 1 0 44 2 0 71 1 0 9 6 5 50 1 0 17 2 1 92 chain 44926 chr3 198295559 + 114210467 114211059 L1PA7 6471 + 5881 6468 31618 5 2 0 507 0 36 9 36 1 22 4 0 7 chain 19119 chr3 198295559 + 114234196 114234465 AluSc8 310 + 11 289 57431 17 24 29 75 0 3 103 0 1 50 chain 52212 chr3 198295559 + 114257698 114258313 L1PA5 6144 + 5518 6134 28814 291 2 3 322 chain 544032 chr3 198295559 + 114276893 114282893 L1PA3long 6157 + 0 6147 1081 152 0 1 211 0 1 124 0 6 273 8 136 272 0 4 4832 0 7 128 chain 536416 chr3 198295559 + 114531691 114538145 L1PA7 6471 + 0 6468 1542 187 42 43 125 0 1 46 4 5 959 0 1 342 0 1 70 0 1 93 1 3 642 0 2 120 1 0 304 9 8 1057 1 0 170 18 13 329 0 2 139 0 8 284 5 4 173 0 1 305 0 1 184 0 2 476 0 2 7 2 0 21 1 0 30 2 7 284 1 0 9 4 0 7 chain 100691 chr3 198295559 + 114662898 114663987 L1HS 6032 + 1374 2463 18217 1089 chain 33825 chr3 198295559 + 114679053 114679445 L1PA7 6471 + 5230 5621 38829 213 2 1 177 chain 28860 chr3 198295559 + 114679446 114679797 L1PA7 6471 + 5621 5972 43534 28 0 1 222 1 0 100 chain 39715 chr3 198295559 + 114679800 114680283 L1PA7 6471 + 5974 6458 34881 135 0 1 348 chain 9378 chr3 198295559 + 114769597 114769770 L1PB1 5432 + 5114 5278 71749 20 1 0 13 16 11 9 2 0 52 1 0 11 7 7 41 chain 69978 chr3 198295559 + 114777476 114778242 L1PA4 6152 + 5372 6138 24000 766 chain 23392 chr3 198295559 + 114817240 114817520 AluSp 311 + 4 284 51774 280 chain 26265 chr3 198295559 + 114890447 114890755 L1PA5 6144 + 5830 6139 47325 145 0 1 163 chain 24469 chr3 198295559 + 114921594 114921865 L1PA5 6144 + 5864 6135 50080 271 chain 35253 chr3 198295559 + 114938424 114938832 L1PA7 6471 + 6061 6469 37862 75 0 1 315 1 0 17 chain 26123 chr3 198295559 + 114996781 114997089 L1PA7 6471 + 5609 5916 47530 6 1 0 301 chain 11516 chr3 198295559 + 115013738 115013904 L1MA3 4352 + 3547 3719 67722 24 0 4 116 12 14 14 chain 53098 chr3 198295559 + 115016819 115017502 L1PA10 4194 + 3372 4057 28542 240 2 3 119 0 2 193 7 6 122 chain 48250 chr3 198295559 + 115107477 115108146 L1PA8 5853 + 5170 5847 30195 80 0 8 168 0 2 136 9 8 29 4 7 71 1 0 11 1 0 50 2 1 19 1 0 87 chain 115887 chr3 198295559 + 115157085 115158663 THE1C-int 1605 + 20 1605 16259 93 0 3 192 1 2 118 17 24 180 5 6 34 32 32 55 8 2 113 6 7 111 0 1 502 4 3 6 0 1 27 1 0 73 chain 24281 chr3 198295559 + 115181074 115181525 MLT2A2 560 + 0 560 50369 102 0 1 38 92 91 60 0 98 16 4 15 81 17 17 41 chain 11034 chr3 198295559 + 115183692 115183846 MSTA-int 1630 + 1477 1630 68507 37 1 0 88 8 9 14 1 0 5 chain 16671 chr3 198295559 + 115183973 115184183 MER4A1 472 + 0 206 60185 174 0 1 10 6 1 20 chain 30754 chr3 198295559 + 115198981 115199333 L1PA5 6144 + 5787 6139 41345 352 chain 8699 chr3 198295559 + 115216859 115216997 Tigger1 2417 + 2294 2416 73217 50 0 1 18 8 0 3 9 0 50 chain 3180 chr3 198295559 + 115222811 115222846 MADE1 96 - 61 96 98098 35 chain 30777 chr3 198295559 + 115231233 115231622 MLT2A1 477 + 0 393 41325 140 0 1 28 1 5 149 1 0 70 chain 469972 chr3 198295559 + 115254449 115261039 L1PA8A 6298 + 34 6263 3860 6 1 0 16 1 0 19 16 5 11 5 0 6 7 9 13 19 10 19 1 10 11 2 1 6 1 0 13 25 20 12 1 0 8 1 0 6 1 0 6 2 1 17 5 0 7 2 0 42 1 0 20 8 0 80 32 27 67 6 5 4 1 0 34 8 0 3 0 1 259 21 17 132 1 0 135 8 0 19 3 0 30 2 1 5 0 1 520 2 0 69 0 1 5 1 0 85 16 1 360 9 2 4 1 0 43 1 0 148 2 4 76 0 11 88 1 2 128 0 30 647 2 0 18 0 1 1 4 0 347 0 1 18 4 9 4 0 1 106 6 7 235 4 3 21 313 0 140 1 3 211 3 0 292 12 13 22 1 0 122 0 1 6 9 8 206 0 1 320 0 3 280 1 3 405 9 9 74 chain 49285 chr3 198295559 + 115267905 115268649 L1PA11 4918 + 3838 4578 29838 66 0 4 202 0 1 220 1 6 55 18 16 34 0 7 23 2 0 16 1 0 20 4 0 9 32 23 10 8 7 10 2 0 11 chain 28792 chr3 198295559 + 115305404 115305711 AluYa8 305 + 0 305 43648 122 2 0 183 chain 2675 chr3 198295559 + 115343019 115343061 MER63B 433 + 69 113 102469 16 2 4 24 chain 77812 chr3 198295559 + 115354610 115355907 L1MA1 4479 + 2900 4172 22142 41 6 7 10 1 0 27 4 12 149 9 11 18 6 1 75 1 0 12 6 0 87 1 0 26 48 45 87 12 10 197 1 0 5 0 1 18 2 0 16 15 14 56 2 1 19 2 0 25 12 13 64 1 0 5 3 0 126 1 0 28 5 3 33 1 0 5 13 9 16 chain 9381 chr3 198295559 + 115366733 115366839 L1PA16 3655 + 2697 2803 71744 106 chain 50708 chr3 198295559 + 115430222 115430909 L1PA8 5853 + 5139 5853 29311 106 6 11 262 0 29 17 1 0 46 2 0 50 20 19 14 1 0 47 2 1 15 6 5 92 chain 56494 chr3 198295559 + 115469055 115469667 L1PA2 6032 + 5420 6032 27429 612 chain 5679 chr3 198295559 + 115471267 115471342 MER58D 378 + 258 331 82437 38 2 0 35 chain 27948 chr3 198295559 + 115472850 115473192 L1PA7 6471 + 6126 6466 44950 333 2 0 7 chain 33823 chr3 198295559 + 115570261 115570823 L1MA5A 2387 + 1745 2276 38831 37 1 0 136 18 20 95 1 0 38 1 0 34 9 13 37 29 26 34 3 0 15 28 0 46 chain 117073 chr3 198295559 + 115744574 115745986 HERV17-int 4347 + 1489 2898 16044 115 2 0 521 14 8 64 0 1 64 0 3 43 9 1 198 0 1 92 0 8 290 chain 768 chr3 198295559 + 115746726 115746898 LTR17 781 + 0 170 59009 59 14 13 84 1 0 14 chain 199751 chr3 198295559 + 115747662 115749910 L1PA4 6152 + 3268 5520 9726 342 0 1 1153 0 1 116 0 1 437 0 1 200 chain 701 chr3 198295559 + 115750535 115750692 LTR17 781 + 170 326 59009 11 1 0 50 2 0 76 0 2 17 chain 441684 chr3 198295559 + 115751440 115756797 L1PA7 6471 + 869 6239 4541 1480 1 0 140 1 0 151 0 1 31 1 0 71 0 3 223 2 0 220 34 21 36 0 1 260 1 0 428 0 1 232 6 10 96 0 2 400 0 4 87 5 8 53 0 2 119 2 0 173 1 0 161 1 2 309 0 5 15 0 3 39 0 1 35 11 12 365 0 2 60 0 1 107 chain 68944 chr3 198295559 + 115791380 115792364 LTR12C 1709 + 0 1709 24226 105 1 2 418 6 5 12 4 845 12 98 0 13 20 0 156 0 3 75 13 12 51 chain 6124 chr3 198295559 + 115791947 115792036 LTR12C 1709 + 1412 1501 60892 89 chain 29607 chr3 198295559 + 115792782 115793153 MLT2A1 477 + 0 371 42477 57 0 1 110 5 2 9 0 1 24 0 1 166 chain 25356 chr3 198295559 + 115847492 115847869 THE1D 372 + 0 372 48693 15 0 2 15 1 0 16 9 0 16 14 15 25 0 1 86 7 9 25 1 0 147 chain 23069 chr3 198295559 + 115893025 115893298 L1PA7 6471 + 6188 6461 52261 273 chain 212012 chr3 198295559 + 115948289 115952353 L1PB2 3958 + 731 3838 9281 394 0 1 125 611 157 67 0 2 98 1 0 17 4 1 33 2 0 140 8 0 64 0 5 184 0 4 363 1 0 64 26 21 13 0 1 4 25 21 270 20 4 106 31 15 19 1 0 37 4 5 53 8 9 48 0 1 230 2 0 56 1 0 14 464 15 47 2 0 12 1 0 56 1 0 38 1 0 70 19 18 48 1 0 72 2 0 22 1 0 63 chain 5915 chr3 198295559 + 115949312 115949378 L1PB2 3958 - 2597 2663 81420 66 chain 5033 chr3 198295559 + 116164407 116164487 MADE1 96 - 0 96 85494 37 5 21 38 chain 566002 chr3 198295559 + 116359999 116366026 L1HS 6032 + 3 6032 64 71 0 1 5185 0 1 771 chain 53850 chr3 198295559 + 116382021 116382663 L1PA5 6144 + 5493 6144 28269 41 4 12 30 2 1 115 7 8 398 0 1 45 chain 69107 chr3 198295559 + 116411026 116411786 L1PA3long 6157 + 5397 6157 24196 760 chain 86545 chr3 198295559 + 116436073 116437388 L1PB1 5432 + 4178 5417 20314 78 1 14 221 0 1 133 0 5 103 0 12 267 11 0 88 47 0 16 29 0 4 0 3 11 1 0 13 16 11 11 3 1 50 2 1 16 1 0 44 1 0 15 2 0 12 1 0 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 9 1 0 4 chain 462062 chr3 198295559 + 116455196 116460498 L1PA4 6152 + 2 5357 4076 578 1 0 128 12 5 597 1 10 1058 0 1 135 0 1 68 0 2 1773 0 2 83 0 43 227 2 0 224 0 1 369 0 4 46 chain 15767 chr3 198295559 + 116477894 116478258 THE1B 368 + 0 368 61330 108 127 132 66 25 24 38 chain 117249 chr3 198295559 + 116518632 116519977 SVA_B 1603 + 0 1599 16008 22 11 31 566 0 37 87 0 204 646 7 0 6 chain 8977 chr3 198295559 + 116555904 116556131 Tigger4b 360 + 24 294 72613 12 5 23 18 39 62 54 38 40 61 chain 419750 chr3 198295559 + 116572713 116578062 HERVL-int 5654 + 0 5654 4879 793 1 0 133 2 0 344 0 2 229 23 24 41 37 365 19 0 5 210 5 0 91 28 0 39 2 4 74 0 1 343 3 11 10 9 0 6 0 1 107 1 0 1114 0 2 456 0 1 398 2 1 172 36 36 13 25 26 141 23 20 202 0 1 15 0 1 97 0 1 105 chain 54500 chr3 198295559 + 116672386 116673044 L1PA6 6164 + 5507 6162 28043 508 0 1 140 4 0 6 chain 24018 chr3 198295559 + 116698469 116698742 L1PA4 6152 + 4076 4349 50768 273 chain 104583 chr3 198295559 + 116698742 116699904 L1PA4 6152 + 4357 5518 17746 1131 1 0 30 chain 27744 chr3 198295559 + 116736110 116736483 THE1C 375 + 2 375 45258 14 6 7 163 1 0 100 0 1 4 2 1 83 chain 357193 chr3 198295559 + 116744833 116748994 L1PA5 6144 + 1968 6144 5831 103 1 5 119 0 2 116 1 0 853 0 1 35 1 0 823 11 12 244 20 21 574 5 6 378 0 2 34 0 3 586 1 0 243 2 5 11 chain 28951 chr3 198295559 + 116803885 116804203 AluYb8 318 + 0 314 43402 132 2 0 174 2 0 8 chain 133995 chr3 198295559 + 116807162 116808633 L1PA4 6152 + 4680 6151 13655 1471 chain 4088 chr3 198295559 + 116853068 116853139 MLT2D 439 + 299 368 90857 39 5 0 14 0 5 6 2 0 5 chain 10297 chr3 198295559 + 116985311 116985452 L1PA8 5853 + 5700 5841 69815 40 2 1 19 1 0 65 1 3 13 chain 138199 chr3 198295559 + 116985746 116987266 L1PA3long 6157 + 4637 6157 13251 1520 chain 29859 chr3 198295559 + 117025500 117025859 MER41A 554 + 17 388 42174 169 0 10 11 0 1 97 0 1 82 chain 168599 chr3 198295559 + 117030966 117033402 MER41-int 2638 + 185 2636 11175 28 1 0 4 2 0 31 14 7 8 5 0 33 4 0 41 0 1 118 0 4 9 46 47 16 0 1 10 3 7 128 5 1 39 26 29 55 7 21 136 1 3 301 6 7 53 0 1 77 9 14 147 1 2 174 4 0 53 3 4 30 5 4 46 2 0 35 2 0 150 0 3 163 13 16 99 0 1 213 0 1 80 chain 41175 chr3 198295559 + 117033766 117034267 MER41A 554 + 23 528 33853 385 0 4 116 chain 11754 chr3 198295559 + 117049760 117049964 L1PB1 5432 + 5237 5420 67302 44 1 0 15 3 0 15 9 0 16 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 131950 chr3 198295559 + 117050007 117051493 SVA_D 2077 + 8 2077 13831 19 12 0 437 0 116 107 0 40 181 0 85 43 0 2 11 0 352 676 chain 36535 chr3 198295559 + 117108481 117108966 L1PA8 5853 + 5375 5853 37054 189 9 8 36 2 0 70 2 1 8 2 1 52 2 1 19 1 0 93 chain 2324 chr3 198295559 + 117133570 117133690 MER112 246 + 0 102 104582 13 19 1 8 0 18 16 11 17 9 18 0 13 6 0 7 chain 284142 chr3 198295559 + 117207893 117211095 L1PA4 6152 + 2939 6151 7316 755 1 0 258 1 2 226 0 1 1584 0 4 129 1 0 233 0 6 14 chain 21952 chr3 198295559 + 117245665 117246021 THE1C 375 + 0 361 53901 50 22 25 103 26 27 71 1 2 6 0 1 64 1 0 12 chain 26160 chr3 198295559 + 117294688 117294973 L1PA4 6152 + 4787 5072 47486 285 chain 86462 chr3 198295559 + 117336138 117337090 L1PA3long 6157 + 4185 5136 20331 456 1 0 495 chain 475641 chr3 198295559 + 117358542 117364812 L1PA8A 6298 + 34 6282 3733 6 1 0 18 32 21 21 4 1 14 18 14 20 1 0 8 10 13 7 1 0 11 3 1 15 2 0 5 1 0 11 4 3 6 1 0 9 1 0 5 17 14 8 1 0 33 50 36 4 0 1 69 9 0 18 12 9 215 16 17 115 0 18 164 1 0 39 4 9 126 20 7 77 5 2 404 5 1 872 1 3 22 0 1 892 0 4 24 7 8 366 8 50 7 5 0 257 3 2 372 1 0 26 0 8 282 3 0 637 3 2 25 4 2 32 0 1 19 17 0 607 2 3 129 chain 4791 chr3 198295559 + 117419542 117419600 MER3 215 + 76 133 86738 40 1 0 17 chain 3213 chr3 198295559 + 117460356 117460423 L1PREC2 3366 + 3012 3075 97778 39 3 1 7 1 0 4 1 0 12 chain 9561 chr3 198295559 + 117484026 117484153 MER72 723 + 595 721 71344 16 2 1 109 chain 5519 chr3 198295559 + 117542679 117542764 MER5C 305 + 93 177 83161 67 6 5 12 chain 3904 chr3 198295559 + 117544215 117544259 U6 107 + 11 55 92091 44 chain 86562 chr3 198295559 + 117555191 117556148 L1PA3long 6157 + 5201 6157 20307 106 1 0 850 chain 49771 chr3 198295559 + 117564758 117565494 L1PA8 5853 + 5147 5853 29650 138 35 1 157 0 1 120 1 0 41 5 3 54 1 0 13 5 4 9 7 0 6 1 7 22 19 29 6 1 0 95 chain 19805 chr3 198295559 + 117628207 117628505 L1PA8 5853 + 5554 5844 56667 10 1 0 45 3 1 72 1 0 11 3 0 6 5 6 39 1 0 12 6 5 83 chain 541293 chr3 198295559 + 117777980 117784131 L1PA4 6152 + 0 6143 1254 560 1 0 148 0 1 1767 8 0 733 2 1 1019 1 0 1523 0 2 389 chain 5091 chr3 198295559 + 117807444 117807507 MLT1E1A 663 + 545 608 85196 63 chain 74031 chr3 198295559 + 117882385 117883261 L1PA5 6144 + 5291 6137 23086 483 37 7 29 0 1 184 1 0 142 chain 21774 chr3 198295559 + 118027073 118027361 THE1A 353 + 61 353 54130 22 4 5 106 0 3 156 chain 73857 chr3 198295559 + 118048831 118049649 L1PA5 6144 + 4356 5175 23132 759 0 1 59 chain 183170 chr3 198295559 + 118062373 118064402 L1PA3long 6157 + 4129 6157 10431 858 2 0 1021 1 2 147 chain 26998 chr3 198295559 + 118094041 118094373 THE1C 375 + 2 334 46277 332 chain 10298 chr3 198295559 + 118118609 118118754 MER30 238 + 59 238 69812 38 0 37 65 7 4 35 chain 26071 chr3 198295559 + 118141825 118142116 L1PA4 6152 + 4775 5066 47622 291 chain 8649 chr3 198295559 + 118161385 118161532 THE1B 368 + 220 368 73351 19 1 4 42 20 18 65 chain 79445 chr3 198295559 + 118163477 118164412 L1PA6 6164 + 5231 6161 21755 173 2 1 594 6 4 4 1 0 26 1 0 128 chain 5019 chr3 198295559 + 118171876 118172152 LTR12C 1709 + 870 1068 85570 39 202 124 35 chain 49041 chr3 198295559 + 118189612 118190200 L1PA5 6144 + 5554 6144 29936 234 0 1 101 1 0 99 7 0 10 0 7 124 1 3 11 chain 19872 chr3 198295559 + 118190390 118190704 THE1C 375 + 0 313 56579 33 0 2 13 1 0 138 12 13 29 14 5 6 0 5 27 7 8 34 chain 21975 chr3 198295559 + 118258116 118258472 THE1B 368 + 0 368 53872 44 23 38 84 8 6 24 12 14 80 3 0 78 chain 121757 chr3 198295559 + 118315789 118317128 L1PA3long 6157 + 4817 6157 15218 1189 3 4 147 chain 157972 chr3 198295559 + 118322554 118324589 L1PA7 6471 + 4449 6469 11881 189 0 1 21 6 14 130 9 13 138 1 0 202 0 1 339 33 6 111 0 4 92 1 0 263 0 3 5 3 0 334 1 2 78 8 6 53 3 0 15 chain 28024 chr3 198295559 + 118382914 118383263 THE1A 353 + 4 353 44826 80 0 1 25 1 0 243 chain 130503 chr3 198295559 + 118383263 118384840 THE1A-int 1579 + 0 1574 13980 496 1 2 5 1 0 398 2 3 165 4 0 505 chain 44353 chr3 198295559 + 118433200 118433690 L1PA3long 6157 + 5667 6157 31916 490 chain 360638 chr3 198295559 + 118458194 118462716 L1PA7 6471 + 1782 6318 5795 121 13 16 122 0 1 124 4 9 455 1 2 108 6 7 549 11 12 141 0 4 44 1 0 159 2 0 176 0 4 174 7 0 65 0 8 398 5 6 38 15 10 15 0 1 23 1 0 5 0 1 83 1 0 286 6 0 121 0 1 550 1 0 79 0 2 217 0 3 87 0 1 34 1 2 9 0 1 79 1 0 91 3 0 81 0 2 9 chain 520265 chr3 198295559 + 118516737 118522900 L1PA6 6164 + 0 6161 2264 371 0 8 12 20 0 564 0 1 1286 0 1 442 8 1 588 0 2 37 5 6 383 0 1 716 0 1 258 0 1 87 3 1 492 0 7 46 0 4 845 chain 17995 chr3 198295559 + 118536031 118536257 AluSc 308 + 65 299 58658 53 1 9 172 chain 44122 chr3 198295559 + 118594432 118594970 MER41A 554 + 15 553 32068 538 chain 390973 chr3 198295559 + 118608587 118614315 L1PB1 5432 + 60 5420 5306 473 28 35 40 1 0 183 7 8 46 0 3 15 0 1 7 5 7 50 16 17 304 0 4 18 0 3 23 9 6 73 0 9 12 5 0 13 0 1 208 2 0 29 0 1 397 1 0 220 0 3 93 0 1 11 0 4 116 6 0 9 1 0 177 13 14 127 1 0 6 8 3 154 10 9 87 12 13 547 289 0 90 1 10 76 10 14 278 0 1 26 8 0 346 0 1 4 1 0 49 0 2 68 28 25 457 0 1 15 1 2 9 69 0 26 1 0 6 1 0 11 6 2 8 2 0 53 2 1 15 1 0 41 34 20 30 8 5 14 2 0 19 13 10 16 1 0 13 1 0 16 chain 46074 chr3 198295559 + 118695958 118696543 L1PB1 5432 + 2387 2966 31029 108 5 0 338 2 1 132 chain 69715 chr3 198295559 + 118696608 118697485 L1PB1 5432 + 3029 3911 24070 180 1 2 517 1 4 138 0 1 40 chain 41787 chr3 198295559 + 118697510 118698029 L1PB1 5432 + 3935 4455 33498 235 0 1 198 0 1 5 6 5 75 chain 56698 chr3 198295559 + 118698045 118698927 L1PB1 5432 + 4481 5327 27361 129 14 11 191 25 17 274 1 0 11 1 0 24 1 0 9 27 20 53 2 1 11 6 5 44 4 3 12 1 0 4 20 9 18 chain 3436 chr3 198295559 + 118698971 118699034 L1PB1 5432 + 5367 5419 95767 8 9 0 16 1 0 13 1 0 15 chain 19049 chr3 198295559 + 118739241 118739450 L1PA3long 6157 + 5656 5865 57498 209 chain 46813 chr3 198295559 + 118807134 118807869 L1PB1 5432 + 4723 5422 30723 371 25 20 20 1 0 13 1 0 11 18 12 49 1 0 18 2 1 43 1 0 15 1 0 4 2 0 11 9 0 16 2 0 5 1 0 15 2 0 23 3 2 19 1 0 9 5 4 18 chain 89753 chr3 198295559 + 118845077 118846078 L1PA3long 6157 + 5161 6157 19724 853 0 1 129 6 0 13 chain 82147 chr3 198295559 + 118864542 118865609 MER11C 1089 + 0 1073 21213 55 0 91 45 15 14 20 85 0 496 1 0 22 0 1 296 0 1 32 chain 33243 chr3 198295559 + 118877377 118877900 L1M1 2793 + 2167 2695 39308 23 12 16 13 1 0 43 2 1 34 8 9 25 0 4 18 1 0 63 0 2 15 1 0 169 7 8 18 1 0 45 1 0 12 1 0 10 chain 7434 chr3 198295559 + 118898683 118898829 L1MA3 4352 + 4119 4260 76291 37 32 31 49 4 0 24 chain 557852 chr3 198295559 + 118914243 118920271 L1PA2 6032 + 1 6030 253 3180 0 1 2848 chain 9812 chr3 198295559 + 118923586 118923705 MER85 139 + 0 129 70797 90 0 10 29 chain 23240 chr3 198295559 + 118953597 118955421 L1PB1 5432 + 4664 5257 52018 84 1163 0 56 50 60 58 6 0 181 73 11 21 1 0 11 32 25 46 22 20 20 chain 24819 chr3 198295559 + 118975566 118975920 L1PA16 3655 + 3288 3619 49557 290 3 0 6 0 3 5 18 0 11 5 0 16 chain 538485 chr3 198295559 + 119045132 119051152 L1PA3long 6157 + 0 6153 1426 152 0 1 211 1 2 402 8 136 839 2 0 1667 0 1 1877 0 4 861 chain 241573 chr3 198295559 + 119051234 119054818 L1PB1 5432 + 1575 5103 8440 91 4 0 745 0 1 13 0 6 9 4 1 8 3 0 50 2 1 34 302 283 69 1 4 113 8 5 506 1 2 23 33 16 178 2 0 260 0 1 4 1 0 379 8 9 59 5 6 95 1 0 24 18 1 55 6 4 78 0 1 22 6 7 59 2 3 303 chain 382685 chr3 198295559 + 119054822 119059134 L1PA4 6152 + 630 6151 5432 389 0 1 147 0 1208 171 1 0 711 0 1 34 1 0 1004 0 1 1854 chain 128776 chr3 198295559 + 119075802 119077248 L1PA5 6144 + 4524 5964 14182 999 11 4 216 0 1 220 chain 20110 chr3 198295559 + 119079372 119079743 L1PA15 4387 + 4001 4356 56250 103 1 0 20 1 2 4 1 0 55 1 0 4 24 20 8 1 0 26 0 1 12 19 16 42 3 1 15 5 0 26 chain 16849 chr3 198295559 + 119087155 119087366 L1PB1 5432 + 4891 5098 59974 187 4 0 20 chain 14085 chr3 198295559 + 119087475 119087762 L1PB1 5432 + 5159 5422 63477 9 2 0 52 2 1 15 2 1 43 2 1 15 1 0 4 2 0 9 9 1 16 3 1 5 1 0 14 2 0 24 1 0 22 2 1 11 2 1 17 chain 20810 chr3 198295559 + 119092629 119092950 Tigger3b 1229 + 796 1139 55348 55 15 0 7 5 20 69 5 4 37 0 10 93 0 14 11 1 0 23 chain 44169 chr3 198295559 + 119128719 119129279 L1PA8A 6298 + 5735 6291 32039 234 0 1 35 0 3 154 0 1 22 0 1 94 10 0 11 chain 10063 chr3 198295559 + 119129628 119130076 L1MA3 4352 + 37 168 70275 69 316 0 49 1 0 13 chain 506615 chr3 198295559 + 119130087 119136221 L1PA6 6164 + 0 6161 2910 423 5 6 138 1 0 58 1 27 176 26 28 67 0 4 250 7 6 71 1 0 16 0 1 91 12 13 49 0 2 899 20 0 196 0 1 74 0 3 111 0 3 580 3 1 404 1 0 193 0 7 406 0 1 313 0 2 32 0 5 127 14 9 127 0 1 1235 2 0 5 chain 507408 chr3 198295559 + 119164454 119170229 L1PA4 6152 + 6 5739 2874 240 51 0 55 0 1 153 13 7 114 1 0 42 1 0 444 0 2 333 1 10 326 0 4 241 1 2 3759 chain 29388 chr3 198295559 + 119203377 119203760 L1PA8A 6298 + 5907 6290 42754 114 1 2 153 4 11 11 8 0 92 chain 3546 chr3 198295559 + 119233373 119233414 MER8 282 + 8 49 94883 41 chain 130977 chr3 198295559 + 119241985 119243542 SVA_B 1603 + 41 1600 13930 632 0 1 114 10 50 14 2 4 8 1 0 21 1 0 99 39 0 616 chain 280902 chr3 198295559 + 119248572 119252417 L1PB2 3958 + 34 3838 7396 18 1 0 5 13 9 18 5 0 10 19 14 30 2 0 29 2 1 12 1 0 47 1 0 3 2 0 8 0 1 143 4 5 382 5 0 210 0 1 203 1 2 48 0 1 17 7 0 94 5 9 58 0 1 20 9 0 127 9 0 37 1 0 62 0 3 47 0 1 53 1 0 383 0 1 128 15 19 187 3 0 440 0 3 94 0 1 288 2 0 56 1 0 8 1 0 22 5 6 40 2 0 12 4 0 88 1 8 70 1 0 64 1 0 64 10 8 22 1 0 63 chain 466186 chr3 198295559 + 119267501 119273400 L1PA8 5853 + 54 5853 3958 18 2 0 10 1 0 13 49 13 132 0 1 61 18 6 427 8 7 32 5 0 6 0 5 266 1 0 97 7 12 14 0 1 847 6 0 386 0 2 243 7 8 68 9 10 72 0 1 312 0 1 89 5 0 95 0 1 81 0 4 118 0 1 684 0 4 138 5 2 235 13 13 60 0 1 8 13 4 344 0 2 73 1 3 267 0 1 58 0 1 67 60 0 14 0 3 68 1 0 39 0 7 69 1 0 5 6 5 51 2 1 19 5 4 13 0 1 75 chain 21392 chr3 198295559 + 119320788 119321117 THE1B 368 + 0 368 54642 40 0 15 113 1 0 4 2 1 28 35 61 106 chain 25093 chr3 198295559 + 119381715 119382008 AluY 311 + 10 305 49126 48 0 1 67 0 1 178 chain 23834 chr3 198295559 + 119454509 119454797 AluSc5 308 + 0 289 51049 198 0 1 90 chain 7232 chr3 198295559 + 119459131 119459280 MER68 562 + 42 190 76855 23 4 15 11 37 25 74 chain 5360 chr3 198295559 + 119554993 119555074 MER5A1 166 + 7 93 83911 11 7 12 63 chain 2726 chr3 198295559 + 119673936 119674172 SVA_F 1814 + 388 580 102144 23 190 146 23 chain 31880 chr3 198295559 + 119700927 119701390 LTR2 463 + 0 463 40432 154 4 5 56 5 0 13 0 5 133 19 20 25 1 0 28 1 0 24 chain 301695 chr3 198295559 + 119843597 119847303 L1PA7 6471 + 2730 6468 6785 221 8 8 163 0 1 212 4 0 149 18 13 77 1 4 208 0 18 31 0 1 525 5 0 157 1 3 111 0 1 35 0 4 230 3 0 137 7 22 400 0 2 49 0 4 18 4 5 11 1 5 66 1 0 259 0 3 256 1 0 168 2 0 5 2 3 146 7 0 7 chain 70232 chr3 198295559 + 119855189 119855981 L1PA5 6144 + 5344 6137 23943 657 0 1 135 chain 40339 chr3 198295559 + 119862107 119862537 L1HS 6032 + 5602 6032 34417 430 chain 83594 chr3 198295559 + 119888240 119889354 MER11A 1151 + 0 1151 20892 108 0 2 66 8 0 20 1 0 4 11 10 18 6 0 63 0 2 236 0 3 8 0 7 137 5 6 53 0 4 61 2 1 12 5 38 60 0 1 51 0 1 179 chain 33809 chr3 198295559 + 119978044 119978507 LTR19A 502 + 0 502 38839 182 20 55 74 1 2 147 0 1 23 0 2 16 chain 497311 chr3 198295559 + 119981229 119987333 L1PA6 6164 + 2 6161 3228 193 0 1 40 0 2 17 9 8 33 14 15 110 5 6 90 0 2 48 1 0 55 1 0 155 0 1 124 1 5 132 0 1 31 1 2 46 7 6 309 1 6 89 0 3 325 0 2 400 12 10 8 0 2 42 6 4 66 0 1 199 5 7 591 9 2 352 0 26 135 1 0 263 1 2 41 0 3 263 0 3 880 0 1 153 0 3 10 1 0 406 0 7 263 18 17 142 chain 40479 chr3 198295559 + 119989978 119990480 LTR19A 502 + 0 502 34321 196 1 0 41 1 0 74 1 2 147 6 7 35 chain 454254 chr3 198295559 + 120003779 120009853 L1PA7 6471 + 5 6469 4282 174 184 380 118 49 59 57 1 76 64 18 17 14 5 6 76 1 22 986 0 2 86 3 2 497 0 13 112 0 1 600 7 8 109 3 2 11 5 0 36 0 1 15 11 15 59 0 2 136 0 3 220 4 0 30 10 7 457 1 2 49 17 50 95 0 4 221 0 22 347 0 1 64 1 0 169 0 27 10 1 0 81 2 1 376 0 1 142 0 1 41 8 0 125 0 1 153 5 0 8 chain 5050 chr3 198295559 + 120103740 120103848 MamRep137 426 - 226 359 85417 61 33 58 14 chain 80173 chr3 198295559 + 120116271 120117344 MER11A 1151 + 0 1151 21596 55 0 99 45 2 0 29 1 0 66 0 11 11 37 0 72 1 2 21 0 1 147 1 0 84 0 8 166 0 1 13 0 1 30 3 0 33 1 0 98 0 2 90 7 6 60 chain 52152 chr3 198295559 + 120139334 120140062 Tigger1 2417 + 407 1144 28829 128 2 1 4 0 1 21 1 5 46 11 12 160 0 1 87 9 12 5 3 0 146 1 4 104 chain 8440 chr3 198295559 + 120140719 120140919 LTR12C 1709 + 773 1179 73821 64 81 287 55 chain 7430 chr3 198295559 + 120210333 120210419 HY3 101 + 14 100 76306 86 chain 319520 chr3 198295559 + 120250672 120254807 L1PA11 4918 + 350 4509 6415 38 4 7 76 13 10 60 1 0 21 0 1 4 1 0 239 1 2 185 0 1 210 1 0 107 0 1 4 1 0 92 2 1 334 2 39 31 1 2 356 21 19 18 1 0 25 0 1 4 4 5 13 0 1 410 0 1 24 0 1 22 3 0 376 0 1 229 15 14 327 1 0 184 0 4 210 4 0 96 0 1 101 1 0 70 3 0 64 3 2 12 4 0 68 2 0 14 1 0 21 chain 40840 chr3 198295559 + 120263708 120264341 LTR9B 643 + 0 643 34070 125 11 13 62 5 7 215 63 67 13 2 9 14 4 0 78 1 0 40 chain 112370 chr3 198295559 + 120289533 120291062 LTR12C 1709 + 0 1709 16769 210 12 9 37 5 6 15 4 0 61 0 43 80 8 0 19 15 33 137 0 119 68 1 0 234 0 47 97 44 13 390 8 7 84 chain 43661 chr3 198295559 + 120292598 120293236 L1PREC2 3366 + 260 902 32343 28 9 8 107 2 1 54 28 27 110 8 10 47 6 10 165 0 1 74 chain 104044 chr3 198295559 + 120293934 120295335 L1PA14 3548 + 1865 3267 17816 416 2 6 39 0 1 97 1 0 64 0 6 43 1 0 146 5 0 4 0 1 250 3 1 14 2 0 48 2 0 4 2 0 78 0 1 23 5 11 13 2 0 6 1 0 12 0 1 71 1 0 46 chain 30128 chr3 198295559 + 120311464 120311915 LTR2 463 + 0 463 41916 107 59 70 124 0 1 65 2 1 13 0 1 16 0 1 12 1 0 52 chain 62612 chr3 198295559 + 120315606 120316603 L1PREC2 3366 + 139 1125 25729 31 1 0 5 34 27 7 1 0 26 1 0 10 1 0 10 14 12 22 1 0 101 32 26 361 19 27 42 29 29 99 0 1 150 chain 108038 chr3 198295559 + 120413815 120415011 SVA_F 1814 + 6 1812 17319 601 0 613 577 3 0 15 chain 17069 chr3 198295559 + 120442911 120443102 L1PA3long 6157 + 5965 6156 59733 191 chain 10215 chr3 198295559 + 120512217 120512339 MER50 708 + 564 686 69982 122 chain 6433 chr3 198295559 + 120534100 120534178 L1PA17 2846 + 1518 1596 79558 78 chain 3684 chr3 198295559 + 120547806 120547845 L1PA3long 6157 + 5878 5917 93718 39 chain 543437 chr3 198295559 + 120573021 120579157 L1HS 6032 + 8 6032 1113 132 18 17 99 1 0 521 129 1 120 1 0 5007 0 19 108 chain 353413 chr3 198295559 + 120580772 120584651 L1PA3long 6157 + 2276 6157 5874 914 0 1 1797 0 1 1168 chain 66983 chr3 198295559 + 120629543 120630526 L1PREC2 3366 + 1986 2951 24708 216 17 16 38 0 5 101 1 0 12 0 1 377 2 0 54 2 1 39 54 42 12 2 0 5 3 0 8 12 10 28 chain 7345 chr3 198295559 + 120648750 120648870 MER4D1 891 + 779 891 76533 27 1 0 15 1 0 47 7 1 22 chain 11975 chr3 198295559 + 120650272 120650422 MER4D1 891 + 697 845 66879 107 1 0 17 1 0 24 chain 78776 chr3 198295559 + 120676859 120677908 MER11C 1089 + 0 1064 21926 208 0 3 35 0 9 62 0 4 65 1 0 146 49 46 112 7 9 38 0 1 127 0 1 54 1 0 144 chain 527636 chr3 198295559 + 120719213 120725949 L1PA4 6152 + 0 6143 1929 567 8 22 643 1 0 9 1 2 907 1 0 47 0 9 546 700 82 86 1 0 1715 1 0 212 0 1 456 0 4 835 chain 12554 chr3 198295559 + 120728574 120728711 L1PA3long 6157 + 6019 6156 65894 137 chain 16351 chr3 198295559 + 120830745 120830945 MER107 203 + 0 203 60573 176 0 3 24 chain 8404 chr3 198295559 + 120853403 120853560 MLT1B 390 + 7 166 73893 14 1 0 34 1 0 18 14 19 25 7 6 43 chain 18858 chr3 198295559 + 120867704 120867939 L1PA6 6164 + 5920 6156 57702 95 6 7 134 chain 3436 chr3 198295559 + 120870172 120870212 MLT1J2 417 + 57 97 95770 40 chain 14812 chr3 198295559 + 120874797 120874971 L1PA5 6144 + 5970 6144 62509 174 chain 86347 chr3 198295559 + 120880030 120881126 L1PA10 4194 + 3060 4161 20356 72 0 5 369 0 1 5 1 0 178 5 6 20 1 2 211 0 3 144 1 0 40 3 0 34 1 0 11 chain 17439 chr3 198295559 + 120887048 120887265 L1PA7 6471 + 6249 6468 59304 154 1 0 31 0 2 22 0 1 9 chain 43096 chr3 198295559 + 120932589 120933064 L1PA4 6152 + 5530 6008 32713 7 0 3 468 chain 12660 chr3 198295559 + 120933064 120933207 L1PA4 6152 + 6009 6152 65702 143 chain 141700 chr3 198295559 + 120950636 120952206 L1PA2 6032 + 4349 5920 12960 319 0 2 417 1 0 833 chain 286038 chr3 198295559 + 120957644 120960919 L1PA5 6144 + 2866 6143 7258 243 0 1 629 0 4 598 0 4 564 3 0 370 2 0 98 1 0 514 1 0 252 chain 35514 chr3 198295559 + 120989834 120990229 L1PA4 6152 + 4015 4410 37714 395 chain 31617 chr3 198295559 + 120990229 120990577 L1PA4 6152 + 4411 4759 40649 348 chain 68700 chr3 198295559 + 120990599 120991357 L1PA4 6152 + 4759 5517 24285 758 chain 259833 chr3 198295559 + 121019212 121022976 L1PBa 3878 + 29 3744 7974 10 2 0 8 4 1 12 38 0 8 4 32 30 83 33 50 1 0 17 6 4 127 4 0 64 3 4 20 18 19 56 1 0 238 3 1 6 0 1 92 0 1 4 2 1 115 0 4 7 0 7 18 0 3 18 7 8 174 0 1 134 1 2 248 8 7 9 5 0 257 2 0 44 0 6 402 6 7 55 0 1 56 0 1 181 5 0 71 1 4 8 2 0 17 0 1 268 9 3 34 8 5 6 1 0 96 0 3 24 3 20 25 7 4 298 12 16 178 1 0 23 2 0 7 chain 147365 chr3 198295559 + 121028916 121030677 L1PA7 6471 + 4696 6458 12522 375 1 0 470 3 2 6 0 1 75 0 3 451 1 0 379 chain 103667 chr3 198295559 + 121032457 121033584 L1PA2 6032 + 4904 6031 17854 744 0 1 369 1 0 13 chain 295796 chr3 198295559 + 121050405 121053782 L1PA4 6152 + 1807 5184 6955 879 2 1 480 1 0 163 0 7 319 14 0 774 0 1 52 0 3 179 6 7 291 0 4 217 chain 40554 chr3 198295559 + 121085354 121085900 L1PA10 4194 + 3619 4159 34265 81 1 2 43 6 0 154 0 3 211 7 4 33 1 0 9 chain 9261 chr3 198295559 + 121086451 121086569 Tigger3c 601 + 345 465 72002 19 0 2 99 chain 97372 chr3 198295559 + 121088064 121089105 L1HS 6032 + 4991 6032 18611 1041 chain 5792 chr3 198295559 + 121104273 121104480 L1PB 1623 + 1415 1586 81962 31 1 0 7 2 1 30 1 0 4 96 65 22 2 0 11 chain 103266 chr3 198295559 + 121162296 121163582 L1PA8 5853 + 4570 5847 17923 86 0 1 349 1 0 3 2 0 168 0 1 386 1 0 44 2 0 22 11 10 35 20 18 47 2 1 19 1 0 87 chain 464987 chr3 198295559 + 121167510 121173323 L1PA7 6471 + 632 6454 3992 149 9 6 102 3 7 8 4 0 181 0 1 297 27 21 443 1 3 5 2 0 141 0 2 633 22 16 192 0 1 360 10 11 286 1 0 31 0 1 15 0 4 326 0 1 369 18 0 106 0 3 316 0 8 187 2 0 347 8 24 169 0 1 196 0 1 12 1 4 273 4 5 289 0 3 84 2 0 182 chain 3644 chr3 198295559 + 121181006 121181046 L1PBa 3878 + 1660 1700 94062 40 chain 8104 chr3 198295559 + 121181354 121181451 L1PBa 3878 + 1659 1756 74630 97 chain 116761 chr3 198295559 + 121187620 121189098 L1P2 5180 + 2071 4283 16094 256 2 0 52 0 8 533 10 742 33 8 5 527 1 0 56 chain 156060 chr3 198295559 + 121192103 121193963 L1PA6 6164 + 4281 6146 12000 84 0 4 975 0 1 495 6 5 197 0 1 103 chain 117191 chr3 198295559 + 121207151 121208483 L1PA5 6144 + 4802 6134 16025 1332 chain 36776 chr3 198295559 + 121239459 121239867 L1PA3long 6157 + 5747 6156 36903 77 0 1 331 chain 449222 chr3 198295559 + 121262862 121268564 L1PA7 6471 + 844 6469 4409 251 0 1 79 2 1 184 3 4 274 0 9 278 0 1 51 0 1 321 0 1 4 175 10 77 1 0 250 12 7 112 0 7 87 0 2 137 1 2 271 0 2 409 17 11 515 0 3 231 1 0 221 17 31 153 0 53 544 0 1 181 0 3 272 1 0 286 0 3 284 chain 140277 chr3 198295559 + 121311516 121315641 L1PA4 6152 + 4313 6149 13079 853 2500 209 625 0 2 147 chain 21187 chr3 198295559 + 121333890 121334258 THE1B 368 + 0 368 54908 63 1 2 40 34 39 30 30 23 97 5 6 68 chain 96511 chr3 198295559 + 121343340 121344415 L1PA3long 6157 + 4087 5162 18716 1075 chain 3787 chr3 198295559 + 121374932 121374997 L1PB4 2604 + 2506 2570 92943 46 8 7 11 chain 86053 chr3 198295559 + 121377254 121378335 L1PA8 5853 + 4763 5853 20425 245 1 3 22 3 4 24 0 9 17 0 1 135 4 5 47 0 1 201 0 1 86 1 0 46 2 0 70 1 0 13 1 0 51 2 1 12 5 4 92 chain 55092 chr3 198295559 + 121401317 121401907 L1HS 6032 + 5442 6032 27841 590 chain 514466 chr3 198295559 + 121452690 121458395 L1PA3long 6157 + 442 6157 2546 969 0 9 480 1 0 611 0 1 775 6 5 389 0 2 2474 chain 24791 chr3 198295559 + 121498038 121498342 AluSp 311 + 10 310 49601 276 2 0 16 2 0 8 chain 23102 chr3 198295559 + 121530920 121531192 AluSp 311 + 4 287 52210 49 0 11 223 chain 136083 chr3 198295559 + 121688157 121689666 SVA_D 2077 + 6 2077 13428 554 0 40 278 0 83 42 0 403 85 0 37 531 1 0 18 chain 135844 chr3 198295559 + 121742029 121743620 L1PA6 6164 + 4566 6162 13453 482 1 0 267 6 9 288 0 1 298 1 2 79 18 19 151 chain 5157 chr3 198295559 + 121756793 121756861 MLT1A0 366 + 292 366 84876 45 0 2 16 0 4 7 chain 30271 chr3 198295559 + 121775261 121775624 L1PA7 6471 + 6096 6461 41790 4 0 1 278 0 2 7 1 0 73 chain 457221 chr3 198295559 + 121811597 121817387 L1PA8 5853 + 50 5816 4205 22 2 0 10 1 0 13 52 13 191 6 10 13 33 6 46 1 2 26 0 23 171 0 4 217 0 1 25 10 11 129 1 3 213 0 1 63 0 2 156 7 6 169 10 6 76 0 1 815 0 2 111 0 4 323 0 4 101 0 4 471 5 6 126 1 0 220 0 4 345 2 1 148 14 0 83 0 3 556 1 7 241 0 4 216 0 1 87 1 0 46 2 0 72 1 0 13 7 6 41 2 1 19 1 0 56 chain 27065 chr3 198295559 + 121961916 121962271 THE1A 353 + 0 353 46178 102 10 9 87 1 0 155 chain 4338 chr3 198295559 + 121967589 121967741 L1MA3 4352 + 4210 4352 89242 22 18 14 16 2 0 7 14 13 7 1 0 25 2 1 11 13 12 14 chain 40373 chr3 198295559 + 121973049 121973558 MER75 514 + 0 514 34402 153 0 4 338 1 2 17 chain 25419 chr3 198295559 + 121977473 121977829 THE1B 368 + 0 368 48601 22 9 26 7 4 0 117 1 0 17 0 1 103 1 0 75 chain 31506 chr3 198295559 + 121999652 122000164 LTR59 565 + 0 558 40730 38 0 1 102 8 46 19 20 0 39 33 66 87 3 3 47 5 1 38 2 0 71 chain 77852 chr3 198295559 + 122017581 122018526 L1PA7 6471 + 5498 6444 22132 49 0 1 72 2 1 176 0 1 333 0 1 175 1 3 11 4 1 122 chain 108412 chr3 198295559 + 122122151 122123661 THE1C-int 1605 + 72 1605 17263 38 0 54 281 79 23 43 0 1 86 0 1 87 21 22 33 4 13 79 11 14 254 10 19 49 0 1 100 3 1 26 1 4 195 1 0 109 chain 41035 chr3 198295559 + 122129822 122130445 L1P4 1494 + 803 1425 33943 135 0 4 72 33 34 35 1 0 99 1 2 155 0 7 6 9 1 37 2 0 22 3 0 13 chain 73547 chr3 198295559 + 122134258 122135060 L1PA3long 6157 + 5352 6157 23207 31 0 1 766 0 2 5 chain 164743 chr3 198295559 + 122163730 122165923 SVA_F 1814 + 10 1814 11430 870 4 0 56 0 1 10 1 15 39 1 0 186 399 0 627 chain 10268 chr3 198295559 + 122164944 122165142 SVA_F 1814 + 1009 1207 52322 198 chain 8194 chr3 198295559 + 122165185 122165295 SVA_F 1814 + 1028 1138 56154 110 chain 58233 chr3 198295559 + 122175391 122176282 L1PA11 4918 + 3759 4629 26887 33 11 12 12 0 1 90 0 4 423 0 3 56 2 1 19 0 2 12 0 1 39 8 6 15 1 0 6 0 1 13 4 0 11 6 1 10 13 9 15 1 0 13 2 0 11 31 21 7 2 0 5 2 0 18 chain 95703 chr3 198295559 + 122209249 122210816 L1PA10 4194 + 2956 4161 18810 103 362 0 121 1 4 428 6 7 133 1 0 299 0 3 52 3 1 9 3 0 34 1 0 11 chain 13871 chr3 198295559 + 122348825 122349031 MER30 238 + 0 238 63768 16 14 22 61 0 1 4 3 25 78 0 1 30 chain 10008 chr3 198295559 + 122375716 122375881 L1PB4 2604 + 2106 2274 70408 62 30 33 73 chain 8639 chr3 198295559 + 122381942 122382045 MLT1B 390 + 287 390 73376 103 chain 34806 chr3 198295559 + 122400098 122400513 L1PA7 6471 + 6035 6452 38153 72 0 1 28 0 1 315 chain 10121 chr3 198295559 + 122413180 122413324 L1PB4 2604 + 1941 2084 70162 5 0 1 29 6 4 104 chain 77117 chr3 198295559 + 122435564 122436603 MER11B 1079 + 0 1079 22284 36 1 3 7 0 1 51 1 0 154 2 1 43 7 24 127 1 0 90 0 1 4 6 5 227 5 22 83 0 1 103 0 4 68 10 11 13 chain 406713 chr3 198295559 + 122442833 122448752 L1PA6 6164 + 0 6160 5061 258 0 1 56 1 0 233 1 0 19 1 0 127 1074 0 128 17 19 623 8 393 1213 0 1 199 0 3 433 2 0 642 0 908 59 0 5 146 3 16 219 0 6 446 4 0 7 chain 37012 chr3 198295559 + 122450168 122451135 L1PB1 5432 + 4580 5422 36726 15 10 14 20 0 2 86 304 98 271 6 105 29 3 2 9 6 5 45 1 0 15 56 40 10 2 0 24 1 0 14 22 20 18 chain 45546 chr3 198295559 + 122469077 122469661 PABL_A 660 + 0 660 31286 85 6 5 89 0 62 65 0 4 36 0 10 76 2 1 208 0 2 17 chain 8163 chr3 198295559 + 122479940 122480139 L1MC1 2226 + 1854 2037 74499 33 7 1 25 1 0 12 62 55 15 2 0 42 chain 6268 chr3 198295559 + 122487219 122487307 L1MB2 1706 + 924 1016 80097 17 1 4 8 0 1 62 chain 518268 chr3 198295559 + 122650970 122657780 L1PA6 6164 + 0 6160 2353 51 7 14 502 1 0 257 68 0 387 9 8 458 0 1 269 1 3 367 0 1 211 6 5 248 320 0 47 5 9 162 0 1 318 1 0 50 325 0 423 0 1 106 0 1 658 0 24 174 0 3 553 0 4 362 0 18 464 chain 3680 chr3 198295559 + 122665744 122665784 MER58B 340 + 243 283 93744 40 chain 545346 chr3 198295559 + 122732871 122739022 L1PA4 6152 + 0 6151 1016 580 1 0 247 23 6 119 0 6 244 9 5 1228 0 4 1074 1 2 836 0 4 387 0 3 686 0 3 574 0 1 142 chain 23104 chr3 198295559 + 122743296 122743583 AluSp 311 + 9 295 52202 82 0 3 191 4 0 10 chain 157274 chr3 198295559 + 122746616 122748396 SVA_D 2077 + 0 2077 11928 5 1 0 5 0 2 5 1 0 5 1 0 6 1 0 643 0 37 160 0 82 36 1 0 48 1 4 4 0 1 49 0 1 10 0 78 122 0 98 676 chain 13377 chr3 198295559 + 122814667 122814911 MER30 238 + 0 238 64501 13 10 17 64 12 5 8 5 0 7 7 9 65 5 2 48 chain 211783 chr3 198295559 + 122834341 122840132 L1PB3 3668 + 479 3566 9293 155 0 3 248 0 2 88 7 12 216 2 0 6 33 26 78 64 0 65 0 1 5 2 1 8 0 1 53 22 21 56 12 20 11 0 3 51 0 3 25 0 7 16 5 0 47 6 9 38 0 1 63 8 10 67 1 0 219 4 0 46 1 4 18 2637 0 314 13 9 162 1 0 173 1 5 20 0 1 110 1 0 12 3 1 17 0 1 31 5 2 28 4 5 217 1 0 50 0 1 18 0 1 21 6 0 10 2 1 70 0 5 9 21 6 13 2 0 8 2 1 8 0 1 17 2 0 36 chain 26730 chr3 198295559 + 122836628 122836928 L1PA4 6152 + 4054 4354 46640 300 chain 145912 chr3 198295559 + 122836928 122838540 L1PA4 6152 + 4356 5975 12622 429 0 1 518 0 4 374 0 2 291 chain 4290 chr3 198295559 + 122916356 122916406 MER5B 177 + 2 52 89566 50 chain 32383 chr3 198295559 + 122932349 122932809 LTR46 455 + 0 455 40052 24 0 2 5 6 5 151 4 2 119 1 0 47 7 8 45 7 3 44 chain 18316 chr3 198295559 + 123227402 123227616 L1PA7 6471 + 6256 6470 58342 214 chain 8563 chr3 198295559 + 123407784 123407906 L1MB5 1630 + 1357 1476 73532 34 2 0 80 1 0 5 chain 4799 chr3 198295559 + 123417003 123417061 MLT1B 390 + 280 339 86706 12 0 1 46 chain 11208 chr3 198295559 + 123455909 123456101 Tigger2a 444 + 0 212 68237 63 12 13 31 11 32 56 2 0 17 chain 26673 chr3 198295559 + 123541892 123542174 AluYa5 310 + 27 309 46725 282 chain 42519 chr3 198295559 + 123600939 123601485 MLT2A2 560 + 0 555 33054 139 8 7 37 1 0 219 0 11 142 chain 21883 chr3 198295559 + 123738501 123738861 THE1B 368 + 0 368 53997 103 31 33 33 1 0 23 0 2 5 0 1 14 35 37 87 0 2 28 chain 93895 chr3 198295559 + 123856781 123857806 L1PA3long 6157 + 5131 6156 19058 1025 chain 4232 chr3 198295559 + 123968617 123968665 MER53 195 + 132 180 89929 48 chain 4691 chr3 198295559 + 124061994 124062067 MER5A1 166 + 40 118 87321 43 7 12 23 chain 119032 chr3 198295559 + 124133858 124135512 L1PB1 5432 + 3795 5418 15690 196 1 0 335 8 14 288 3 0 169 7 0 7 10 17 282 1 2 9 3 0 24 1 0 9 16 11 9 2 0 49 8 7 14 1 0 44 1 0 10 7 4 16 9 0 10 22 19 6 2 0 24 1 0 21 2 1 12 1 0 14 chain 6323 chr3 198295559 + 124146271 124146353 MER5C 305 + 76 159 79915 32 0 1 50 chain 94934 chr3 198295559 + 124154178 124155228 L1PA3long 6157 + 4062 5115 18919 538 0 1 221 0 2 291 chain 7527 chr3 198295559 + 124183679 124183797 MLT1B 390 + 267 389 76057 11 2 3 29 6 9 70 chain 43377 chr3 198295559 + 124314003 124314497 L1PA5 6144 + 5637 6131 32525 494 chain 13369 chr3 198295559 + 124349367 124349556 MER30 238 + 19 238 64515 79 0 2 8 4 21 30 1 7 22 0 5 45 chain 24550 chr3 198295559 + 124352723 124353022 L1PA6 6164 + 5864 6160 49948 289 3 0 7 chain 3148 chr3 198295559 + 124415707 124415747 MER5A 189 + 119 159 98377 40 chain 7528 chr3 198295559 + 124520506 124520636 MER1B 344 + 216 339 76056 50 29 22 51 chain 17322 chr3 198295559 + 124534273 124534539 L1PA8 5853 + 5593 5853 59431 15 2 0 52 0 1 5 1 0 12 16 14 46 2 1 21 1 0 93 chain 54089 chr3 198295559 + 124751376 124752133 MER4E1 777 + 17 759 28195 8 2 0 296 8 27 51 1 0 9 0 11 11 0 7 103 12 0 12 38 0 198 0 1 8 chain 4073 chr3 198295559 + 124977306 124977353 MSTB1 431 + 384 431 90935 47 chain 66987 chr3 198295559 + 125171208 125171924 L1HS 6032 + 5316 6032 24706 716 chain 85565 chr3 198295559 + 125176529 125177485 L1PA4 6152 + 5195 6152 20527 817 0 1 25 0 1 80 1 0 33 chain 22278 chr3 198295559 + 125252512 125252785 AluSc5 308 + 14 298 53438 18 5 16 250 chain 5279 chr3 198295559 + 125304803 125304882 L1MC4 1079 + 22 99 84287 47 7 5 25 chain 6784 chr3 198295559 + 125310755 125310850 L1MB2 1706 + 1598 1692 78370 13 1 0 81 chain 28629 chr3 198295559 + 125340704 125341013 AluYa5 310 + 0 307 43901 132 2 0 175 chain 36844 chr3 198295559 + 125343334 125343893 LTR12F 595 + 0 595 36850 30 5 7 50 5 42 16 2 0 32 42 8 25 5 14 27 0 24 174 0 4 68 4 0 74 chain 3289 chr3 198295559 + 125354373 125354413 LTR54 533 + 425 469 97115 26 0 4 14 chain 10265 chr3 198295559 + 125385232 125385350 MER57A1 433 + 0 118 69872 118 chain 97034 chr3 198295559 + 125387757 125388904 L1PA6 6164 + 5007 6156 18655 772 0 1 226 2 3 147 chain 37633 chr3 198295559 + 125427332 125428165 MER57-int 2662 + 1799 2625 36317 21 17 0 7 23 0 15 67 47 16 3 4 33 15 14 112 0 107 81 1 0 7 0 2 62 9 8 85 22 16 25 2 1 36 63 27 18 2 1 4 1 0 10 5 2 23 1 0 6 8 3 33 chain 6866 chr3 198295559 + 125446059 125446161 U13_ 108 + 0 103 78078 79 9 10 14 chain 15771 chr3 198295559 + 125454290 125454537 MER1B 344 + 103 344 61319 31 3 0 93 2 0 27 28 27 63 chain 7560 chr3 198295559 + 125516978 125517083 HY1 111 + 0 110 75958 32 0 6 5 2 1 66 chain 20943 chr3 198295559 + 125527824 125528152 THE1A 353 + 0 333 55204 13 2 0 34 12 8 14 0 14 13 1 0 16 0 1 6 16 15 142 2 0 57 chain 25605 chr3 198295559 + 125570521 125570878 THE1B 368 + 0 368 48310 44 5 20 105 1 0 23 2 0 114 14 13 49 chain 117922 chr3 198295559 + 125570878 125572439 THE1B-int 1605 + 0 1597 15896 12 4 6 333 1 2 9 0 1 67 1 26 218 0 1 7 1 0 95 46 45 218 3 0 5 0 3 149 0 1 95 0 7 297 chain 25595 chr3 198295559 + 125572447 125572803 THE1B 368 + 0 365 48327 44 0 15 110 1 0 23 3 1 42 2 0 71 7 6 53 chain 3154 chr3 198295559 + 125604721 125604758 LTR12 884 + 650 687 98329 37 chain 10492 chr3 198295559 + 125607674 125607795 LTR12F 595 + 474 595 69429 121 chain 15408 chr3 198295559 + 125615134 125615347 MLT2A2 560 + 0 201 61779 46 13 0 94 0 1 60 chain 208172 chr3 198295559 + 125616047 125618743 HERVL-int 5654 + 2828 5654 9414 44 0 1 12 0 1 25 0 1 4 2 1 117 8 92 514 0 21 243 0 1 61 0 2 28 0 13 327 3 0 130 2 1 238 4 0 304 0 6 162 1 3 27 0 4 7 2 0 6 11 13 176 3 7 9 4 0 55 6 7 92 0 3 40 8 7 21 chain 2762 chr3 198295559 + 125652731 125652788 MER53 195 + 1 59 101889 28 14 15 15 chain 16192 chr3 198295559 + 125672222 125672514 LTR12C 1709 + 783 1037 60759 54 0 39 136 77 0 25 chain 2980 chr3 198295559 + 125672454 125672489 LTR12C 1709 + 657 693 85117 14 0 1 21 chain 340173 chr3 198295559 + 125694860 125698910 HERVE-int 4064 + 0 4064 6066 83 0 1 440 0 1 79 0 1 152 71 73 703 1 2 676 3 0 786 2 0 115 44 44 35 0 4 202 0 10 70 1 0 587 chain 354457 chr3 198295559 + 125717085 125721147 HERVE-int 4064 + 0 4064 5864 811 3 0 722 1 2 676 3 0 786 2 0 400 0 10 70 1 0 587 chain 84261 chr3 198295559 + 125730452 125731468 LTR5A 1029 + 0 1029 20756 134 0 13 882 chain 344620 chr3 198295559 + 125739717 125743769 HERVE-int 4064 + 0 4064 5992 604 0 1 208 4 1 719 1 2 676 15 12 552 1 3 413 0 4 202 0 10 70 1 0 127 1 2 458 chain 83223 chr3 198295559 + 125753033 125754061 LTR5A 1029 + 0 1029 20981 147 6 5 69 0 2 806 chain 4589 chr3 198295559 + 125790475 125790526 MADE1 96 + 45 96 87849 51 chain 98352 chr3 198295559 + 125801744 125803503 L1PB1 5432 + 3617 5104 18504 77 1 9 23 1 6 76 0 3 151 5 7 24 3 5 124 0 1 46 1 0 36 0 2 157 0 1 15 0 1 178 4 6 41 1 5 17 1 2 141 350 46 24 11 12 156 2 0 5 0 2 8 3 0 5 10 13 62 chain 9182 chr3 198295559 + 125823663 125823794 LTR2 463 + 241 355 72160 41 17 0 73 chain 43262 chr3 198295559 + 125831939 125832489 LTR6B 557 + 0 557 32601 220 2 0 143 0 5 130 0 4 55 chain 187176 chr3 198295559 + 125833903 125837758 HERVS71-int 4705 + 647 4171 10247 8 1 0 5 4 0 12 7 4 5 1 0 17 1 0 4 1 0 18 124 67 21 4 0 154 9 3 282 0 1 354 1 0 374 25 25 119 1 0 182 75 44 15 35 23 16 1 0 8 7 4 11 4 1 7 1 0 7 1 0 4 10 6 11 33 21 8 1 0 6 1 0 11 14 10 42 1 0 9 0 9 32 2 1 17 48 45 17 3 1 9 1 0 29 15 9 11 1 0 15 76 61 6 1 0 7 2 0 9 4 2 21 10 8 35 2 0 10 1 0 7 4 3 13 14 5 22 1 0 20 1 0 4 2 1 6 1 0 19 66 50 14 38 25 9 1 0 11 4 0 41 1 0 12 16 13 15 8 5 11 22 20 8 3 0 6 1 0 12 15 9 19 30 22 29 35 29 16 1 0 17 2 0 57 25 20 7 1 0 20 13 12 28 6 3 52 1 0 3 1 0 21 1 0 30 1 0 13 2 0 6 1 0 12 11 8 5 2 0 5 1 0 29 1 0 7 1 0 4 8 5 25 12 8 20 1 0 7 2 0 36 3 0 23 1 0 16 1 0 3 1 0 4 1 0 26 6 4 10 1 0 21 1 0 39 2 1 11 3 1 14 27 22 42 1 0 8 1 0 8 2 1 12 2 0 20 2 0 7 2 0 22 chain 47801 chr3 198295559 + 125838801 125839359 LTR6B 557 + 0 557 30362 435 1 0 122 chain 458267 chr3 198295559 + 125849810 125855151 L1PA4 6152 + 0 5337 4170 773 0 1 196 2 1 84 1 0 187 28 8 172 0 5 101 2 1 485 0 1 767 0 4 245 0 1 925 0 2 389 0 4 131 0 2 180 1 0 672 chain 301879 chr3 198295559 + 125864096 125867845 HERVH-int 3825 + 0 3825 6782 123 0 1 209 1 0 142 1 56 39 2 1 9 1 0 12 8 4 8 3 0 14 1 0 12 2 40 27 1 0 20 126 0 39 0 1 22 1 0 82 16 19 218 0 2 764 0 8 189 4 0 25 8 13 303 1 49 233 0 58 1083 chain 27874 chr3 198295559 + 125869095 125869488 LTR7 482 + 1 473 45074 68 8 46 109 0 1 27 3 0 11 1 32 12 0 1 4 1 12 149 chain 37182 chr3 198295559 + 125870118 125870532 L1PA2 6032 + 5616 6032 36624 400 0 2 14 chain 63394 chr3 198295559 + 125890458 125891262 LTR5_Hs 974 + 0 974 25545 115 5 13 161 0 1 177 0 1 188 1 0 119 1 162 37 chain 552601 chr3 198295559 + 125891262 125898037 HERVK-int 6823 + 0 6597 574 5 1 0 17 1 0 20 1 0 20 1 0 38 1 0 18 18 15 17 12 0 306 1 0 204 2 0 28 1 0 19 1 0 312 1 0 437 1 0 372 2 0 7 1 0 3680 4 3 10 1 0 198 1 0 21 1 0 101 1 0 36 1 0 124 1 0 49 3 0 5 1 0 7 1 0 3 1 0 74 3 1 10 1 0 21 17 11 11 1 0 20 2 0 3 1 0 8 1 0 5 172 101 9 2 0 12 1 0 14 3 1 14 2 0 27 8 3 7 1 0 3 1 0 10 10 6 10 11 5 7 1 0 8 1 0 5 1 0 26 1 0 4 1 0 12 35 26 17 1 0 1 1 0 12 5 0 11 5 0 10 chain 59753 chr3 198295559 + 125898792 125899558 LTR5_Hs 974 + 0 775 26444 115 18 26 148 0 1 177 0 1 188 1 0 119 chain 22876 chr3 198295559 + 125903347 125903748 MER66B 489 + 28 448 52542 174 6 5 4 0 1 59 69 90 39 12 10 38 chain 89105 chr3 198295559 + 125903757 125905024 LTR12C 1709 + 0 1709 19839 24 22 29 285 0 43 83 25 23 163 0 278 143 0 47 89 24 0 17 11 4 211 0 101 73 28 27 69 chain 554849 chr3 198295559 + 125936638 125942684 L1PA2 6032 + 1 6032 424 2197 1 0 2221 0 1 848 1 0 756 14 0 8 chain 4608 chr3 198295559 + 125970600 125970658 SVA_B 1603 + 1549 1603 87755 48 4 0 6 chain 232276 chr3 198295559 + 125996258 126000000 L1P2 5180 + 3 3461 8684 147 2 1 73 414 187 35 19 0 11 73 67 38 84 8 72 15 18 79 34 14 34 0 15 42 1 3 80 23 46 63 8 9 4 1 0 625 0 1 178 0 5 230 3 0 239 2 3 148 1 2 95 11 15 196 0 4 102 6 7 291 0 4 14 2 1 23 15 20 209 chain 25781 chr3 198295559 + 126000000 126000360 L1P3 4156 + 3772 4136 48049 15 17 22 24 1 0 171 0 3 98 2 0 9 2 1 21 chain 22342 chr3 198295559 + 126001809 126002070 L1PA6 6164 + 5901 6162 53351 91 0 1 4 1 0 165 chain 20122 chr3 198295559 + 126072578 126072857 L1PA15 4387 + 3973 4243 56233 127 6 4 26 1 0 55 1 0 22 4 0 9 2 1 26 chain 42845 chr3 198295559 + 126092094 126092606 MER9a2 513 + 0 513 32865 316 0 3 137 3 1 56 chain 255252 chr3 198295559 + 126093208 126096369 HERVK9-int 4720 + 6 4720 8108 15 1 0 8 19 7 13 13 9 66 1 0 8 1 0 30 1 0 704 1 0 4 0 1 383 1 0 242 0 924 45 1 0 4 0 1 24 0 10 146 51 690 298 1 2 407 0 2 281 0 1 282 3 0 107 chain 41648 chr3 198295559 + 126096369 126096888 MER9a2 513 + 0 513 33594 20 15 5 430 0 4 54 chain 40754 chr3 198295559 + 126170708 126171586 LTR19B 566 + 0 566 34117 241 10 0 55 315 10 13 1 0 113 0 2 42 7 6 25 28 31 28 chain 59910 chr3 198295559 + 126195459 126196122 L1PA5 6144 + 5481 6144 26402 663 chain 68679 chr3 198295559 + 126221565 126222321 L1PA3long 6157 + 5389 6157 24291 151 1 2 33 0 10 479 0 1 92 chain 8789 chr3 198295559 + 126224716 126224822 MER47A 366 + 194 300 73015 106 chain 21677 chr3 198295559 + 126241799 126242158 THE1B 368 + 0 366 54262 107 8 10 60 67 72 117 chain 25739 chr3 198295559 + 126279908 126280224 Tigger2a 444 + 65 381 48108 316 chain 553411 chr3 198295559 + 126331604 126337586 L1PA2 6032 + 0 6029 523 274 0 47 5708 chain 236549 chr3 198295559 + 126382388 126385059 L1PA6 6164 + 3490 6161 8555 204 1 0 631 0 1 1835 chain 5563 chr3 198295559 + 126509020 126509090 MER33 330 + 124 194 82970 70 chain 120963 chr3 198295559 + 126690234 126691715 L1PB1 5432 + 1284 2796 15354 13 0 1 93 5 12 30 0 6 6 5 8 92 0 4 738 0 10 499 chain 6519 chr3 198295559 + 126709886 126709998 MER2B 336 + 223 336 79272 50 21 22 41 chain 534887 chr3 198295559 + 126801074 126807197 L1PA4 6152 + 3 6140 1625 114 1 0 4 0 1 165 1 2 291 1 0 118 7 0 1204 0 1 132 9 8 581 0 2 538 0 1 375 0 14 135 1 0 1161 0 1 453 0 4 832 chain 29125 chr3 198295559 + 126833773 126834078 AluYa8 305 + 0 305 43154 305 chain 4230 chr3 198295559 + 126839731 126839789 Charlie4a 502 + 347 405 89943 37 0 1 4 1 0 16 chain 21267 chr3 198295559 + 126860353 126860606 L1PA5 6144 + 5891 6144 54805 38 0 1 64 2 1 149 chain 134051 chr3 198295559 + 127046494 127048041 LTR12C 1709 + 0 1709 13650 699 0 159 214 0 2 37 1 0 6 2 0 107 0 4 481 chain 3158 chr3 198295559 + 127272459 127272533 MADE2 80 + 5 80 98286 19 27 28 28 chain 3629 chr3 198295559 + 127274702 127274894 MER52C 1267 + 1005 1061 94196 32 122 0 6 14 0 18 chain 7438 chr3 198295559 + 127276559 127277028 MER52-int 3354 + 152 454 76282 26 127 0 26 46 23 14 146 134 15 1 0 22 4 1 25 1 0 16 chain 72851 chr3 198295559 + 127308879 127309715 SVA_B 1603 + 687 1603 23343 177 1 0 29 0 83 621 2 0 6 chain 3348 chr3 198295559 + 127404767 127404836 MIR 256 + 13 84 96613 37 17 19 15 chain 12185 chr3 198295559 + 127405525 127405827 MER41G 495 + 2 290 66500 83 10 80 6 1 0 9 88 0 9 2 3 59 9 13 26 chain 191796 chr3 198295559 + 127433362 127435454 L1PA2 6032 + 3945 6032 10032 6 0 4 793 9 0 1284 chain 5671 chr3 198295559 + 127510414 127510479 MSTC 436 + 0 65 82464 65 chain 2104 chr3 198295559 + 127511163 127511229 MADE1 96 - 0 96 105781 24 5 35 37 chain 278384 chr3 198295559 + 127514564 127517713 L1PA5 6144 + 2994 6144 7479 182 1 0 1049 1 2 395 0 1 1521 chain 5238 chr3 198295559 + 127664708 127664788 MADE1 96 - 0 96 84507 38 5 21 37 chain 43751 chr3 198295559 + 127732957 127733510 MER41A 554 + 0 554 32284 384 3 0 6 5 9 155 chain 28215 chr3 198295559 + 127794936 127795401 L1PA16 3655 + 3154 3592 44546 46 2 1 82 9 7 145 12 11 13 18 4 38 15 5 11 0 4 57 3 0 14 chain 37123 chr3 198295559 + 127890575 127891113 LTR10F 562 + 0 562 36665 16 0 1 106 0 84 21 0 3 25 62 0 242 1 2 5 3 0 57 chain 70873 chr3 198295559 + 127893365 127895384 HERVIP10F-int 4088 + 218 1761 23784 13 33 23 12 3 0 7 3 1 13 1 0 19 1 0 8 107 63 4 1 0 12 65 52 14 1 0 16 54 44 18 1 0 31 1 0 33 1 0 5 3 2 5 1 0 5 1 0 10 1 0 10 1 0 17 12 11 4 1 0 10 1 0 28 2 0 6 1 0 43 1 0 4 1 0 4 4 2 33 1 0 7 1 0 59 1 0 5 1 0 26 1 0 11 1 0 7 1 2 15 1 0 4 20 11 4 1 0 16 14 10 7 1 0 30 1 0 40 2 0 13 9 7 13 1 0 5 15 11 24 12 9 18 1 0 14 1 0 24 2 0 17 1 0 131 53 41 11 1 0 12 5 3 26 1 0 29 1 0 44 308 0 19 7 5 18 5 4 59 1 0 32 25 21 97 chain 3985 chr3 198295559 + 127895384 127895430 LTR10F 562 + 516 562 91555 46 chain 111557 chr3 198295559 + 127905807 127907152 L1PA7 6471 + 5108 6465 16871 87 1 2 356 21 0 157 1 0 400 0 1 61 0 20 123 0 1 47 0 11 91 chain 5671 chr3 198295559 + 127914020 127914147 LTR12 884 + 188 266 82467 62 49 0 16 chain 178024 chr3 198295559 + 128017940 128021528 MER57-int 2662 + 47 2649 10678 24 44 28 9 1 0 73 10 18 39 320 3 36 6 0 35 2 0 377 4 0 182 0 8 66 1 0 24 328 1 43 0 1 52 0 4 109 1 7 63 0 7 110 0 2 310 18 13 141 316 2 60 13 15 63 0 4 315 0 3 22 60 57 44 25 19 45 1 0 20 32 18 25 6 4 10 4 1 24 1 0 9 5 0 33 3 0 24 chain 10135 chr3 198295559 + 128021585 128021718 MER57A1 433 + 288 429 70137 79 2 7 21 0 3 31 chain 2697 chr3 198295559 + 128396668 128396717 MIR 256 + 73 123 102365 22 8 9 19 chain 49136 chr3 198295559 + 128436574 128437528 L1PB1 5432 + 4017 4663 29890 252 0 3 236 343 34 85 2 0 36 chain 112348 chr3 198295559 + 128653226 128654650 LTR12C 1709 + 0 1702 16771 18 10 24 237 4 0 185 0 1 190 0 278 179 1 0 4 4 2 96 21 14 95 5 7 174 1 0 57 1 0 66 1 0 75 chain 26353 chr3 198295559 + 128666872 128667556 MER41C 542 + 142 531 47197 59 7 4 19 7 0 86 1 20 87 304 0 114 chain 54595 chr3 198295559 + 128675782 128676411 LTR6A 649 + 0 633 28012 355 0 1 79 0 3 195 chain 82090 chr3 198295559 + 128720363 128721422 MER11C 1089 + 0 1074 21226 23 3 7 220 19 20 45 1 5 368 0 4 45 0 1 33 1 0 52 5 6 234 1 2 9 chain 25464 chr3 198295559 + 128749538 128749889 THE1B 368 + 0 366 48532 44 6 21 99 7 11 18 4 1 100 1 0 72 chain 30295 chr3 198295559 + 128749891 128750261 THE1B-int 1605 + 0 370 41766 370 chain 24718 chr3 198295559 + 128751769 128752125 THE1B 368 + 0 368 49698 44 11 26 96 3 2 25 4 1 23 0 2 75 1 0 74 chain 116222 chr3 198295559 + 128772730 128774097 SVA_C 1631 + 174 1631 16183 467 0 37 30 54 11 118 0 42 94 0 45 225 0 9 379 chain 3747 chr3 198295559 + 128773227 128773281 SVA_C 1631 + 745 799 67719 54 chain 33762 chr3 198295559 + 128828801 128835173 LTR14 556 + 0 556 38881 65 0 26 42 323 0 187 5524 0 72 0 4 42 0 1 117 chain 45358 chr3 198295559 + 128862182 128862742 L1PA5 6144 + 5577 6144 31389 170 0 1 137 1 0 28 0 1 38 0 1 29 9 14 148 chain 45644 chr3 198295559 + 128920576 128921195 LTR14B 630 + 0 630 31238 18 0 1 4 1 0 152 45 0 19 0 42 215 0 4 95 0 10 70 chain 44893 chr3 198295559 + 128921367 128921959 HERVK14-int 1672 + 1072 1665 31643 33 1 0 13 0 2 188 2 1 42 0 3 62 1 0 62 2 1 31 2 0 9 1 0 81 0 4 55 1 0 6 chain 50641 chr3 198295559 + 128924127 128925079 LTR14B 630 + 0 630 29330 296 323 0 104 13 14 216 chain 166922 chr3 198295559 + 128953643 128956194 SVA_F 1814 + 10 1814 11277 871 1 0 55 0 1 10 0 15 49 762 0 803 chain 9421 chr3 198295559 + 128954629 128954734 SVA_F 1814 + 1187 1291 62655 87 1 0 17 chain 9303 chr3 198295559 + 128954751 128954873 SVA_F 1814 + 1006 1128 49139 122 chain 28283 chr3 198295559 + 128954873 128955390 SVA_F 1814 + 888 1187 38641 59 0 15 49 1 0 166 232 0 10 chain 3346 chr3 198295559 + 128955149 128955191 SVA_F 1814 + 1177 1219 96640 10 1 0 27 0 1 4 chain 15633 chr3 198295559 + 128955211 128955378 SVA_F 1814 + 1011 1177 61493 127 1 0 39 chain 40249 chr3 198295559 + 128959817 128960251 LTR7Y 441 + 0 441 34480 320 0 7 114 chain 281634 chr3 198295559 + 128960253 128963726 HERVH-int 3825 + 2 3825 7383 86 2 0 155 0 5 127 0 1 112 3 1 11 37 31 39 65 0 10 1 0 24 1 151 23 2 1 545 4 3 162 0 9 186 5 32 299 0 10 1045 9 11 39 39 249 99 0 1 4 1 0 34 0 9 76 1 4 5 0 2 222 chain 40138 chr3 198295559 + 128964959 128965390 LTR7Y 441 + 0 431 34567 431 chain 29939 chr3 198295559 + 128968889 128969340 LTR7B 505 + 0 495 42110 108 0 10 50 0 1 6 0 38 12 34 27 18 3 2 6 0 2 85 1 0 76 20 19 18 0 3 14 chain 121311 chr3 198295559 + 128978586 128979947 L1PA5 6144 + 4764 6134 15294 434 0 4 95 0 4 81 0 1 27 0 1 474 1 0 249 chain 42936 chr3 198295559 + 128984203 128984748 MLT2A2 560 + 0 560 32818 28 0 5 10 1 0 288 1 0 71 0 11 115 4 5 27 chain 31995 chr3 198295559 + 128991390 128991788 MER48 407 + 0 407 40348 30 0 1 4 1 0 130 0 8 7 0 1 226 chain 10148 chr3 198295559 + 129050023 129050179 L1MC1 2226 + 1897 2047 70109 20 1 0 64 16 11 55 chain 6592 chr3 198295559 + 129052134 129052317 MLT1F1 559 + 298 493 79009 16 6 0 13 64 67 20 0 16 50 2 1 12 chain 31716 chr3 198295559 + 129065772 129066179 MLT2A2 560 + 0 406 40565 180 1 0 200 0 1 4 2 1 20 chain 39099 chr3 198295559 + 129069291 129069886 LTR12 884 + 0 750 35287 25 1 0 30 0 41 103 21 7 16 13 15 73 0 1 29 1 2 30 0 22 35 1 0 52 8 10 56 0 103 18 1 0 82 chain 29207 chr3 198295559 + 129219361 129219780 LTR7B 505 + 0 495 43036 90 0 3 14 0 11 57 17 79 26 0 2 80 1 0 79 14 13 41 chain 3140 chr3 198295559 + 129228915 129229019 LTR33A 529 + 78 184 98470 20 36 37 12 11 12 25 chain 5542 chr3 198295559 + 129293287 129293367 L1PB1 5432 + 5347 5423 83063 23 1 0 21 1 0 13 1 0 15 1 0 4 chain 20725 chr3 198295559 + 129327280 129327527 AluSc5 308 + 53 304 55464 95 0 3 16 0 1 136 chain 24084 chr3 198295559 + 129338005 129338349 THE1A 353 + 0 353 50673 107 13 13 18 0 8 167 24 25 15 chain 14256 chr3 198295559 + 129372949 129373127 L1P4 1494 + 619 799 63255 165 0 2 13 chain 23519 chr3 198295559 + 129389384 129389675 LTR14A 344 + 0 342 51556 64 0 1 104 0 48 57 0 2 66 chain 49653 chr3 198295559 + 129413214 129413779 LTR19B 566 + 1 566 29701 565 chain 17431 chr3 198295559 + 129591357 129591564 7SLRNA 320 + 9 215 59316 18 1 0 188 chain 3206 chr3 198295559 + 129652639 129652675 MER4D 903 + 236 272 97849 36 chain 34337 chr3 198295559 + 129694469 129694930 MER41A 554 + 72 538 38467 185 12 9 43 1 0 77 0 6 4 0 1 21 0 2 118 chain 60908 chr3 198295559 + 129695798 129696560 MER4E1 777 + 0 769 26135 22 4 3 217 1 0 36 0 1 262 12 20 208 chain 18291 chr3 198295559 + 129840531 129840879 THE1D 372 + 0 368 58373 73 15 15 24 0 4 19 76 93 69 1 0 71 chain 41889 chr3 198295559 + 129840886 129841758 THE1D-int 1627 + 0 559 33430 14 1 3 14 0 2 18 0 1 146 0 1 217 333 15 116 1 0 12 chain 5705 chr3 198295559 + 129899608 129899695 MADE1 96 + 1 96 82315 39 5 9 9 0 4 34 chain 38848 chr3 198295559 + 129901261 129901748 MER9a3 513 + 0 513 35469 18 0 25 67 0 1 145 1 0 119 1 3 56 0 1 21 2 0 57 chain 370232 chr3 198295559 + 129902427 129906749 HERVK9-int 4720 + 349 4668 5651 1011 10 10 205 0 1 215 13 0 279 0 1 188 0 1 2255 0 1 117 5 11 24 chain 33407 chr3 198295559 + 129906802 129907243 MER9a3 513 + 0 445 39169 18 0 2 80 10 11 66 0 1 239 1 0 17 0 1 10 chain 26117 chr3 198295559 + 129917226 129917678 LTR10E 629 + 0 605 47542 98 3 159 35 9 8 22 1 0 133 53 54 52 9 7 37 chain 6318 chr3 198295559 + 129993885 129993973 MER5A 189 + 80 166 79942 4 1 0 58 1 0 24 chain 109095 chr3 198295559 + 130010458 130011854 LTR12C 1709 + 0 1709 17171 259 1 2 38 1 2 37 0 43 83 0 3 183 0 278 184 1 0 4 4 2 100 1 0 6 11 4 333 1 0 66 1 0 82 chain 81086 chr3 198295559 + 130057288 130058265 LTR5_Hs 974 + 0 974 21418 50 0 3 365 1 0 40 0 4 362 9 0 150 chain 280813 chr3 198295559 + 130059562 130063286 HERVH-int 3825 + 0 3806 7399 26 0 1 154 10 12 19 4 15 308 10 5 30 1 0 9 71 9 16 70 0 14 1 0 12 30 6 13 26 3 4 1 0 35 0 20 68 1 0 447 15 0 459 4 31 295 0 10 359 1 2 688 9 11 39 8 218 222 4 3 35 0 2 206 chain 25584 chr3 198295559 + 130064565 130064974 LTR7 482 + 0 482 48342 54 9 98 9 1 0 3 49 0 60 3 4 25 1 0 4 0 3 5 0 31 186 chain 31521 chr3 198295559 + 130174722 130175149 MER4A1 472 + 35 470 40722 65 0 2 124 24 26 197 0 4 17 chain 73687 chr3 198295559 + 130187466 130188543 MER11A 1151 + 0 1144 23174 55 0 99 76 1 0 64 4 0 38 0 2 85 24 25 94 0 1 145 5 6 147 24 0 10 8 15 21 18 0 37 0 1 60 13 15 148 chain 29135 chr3 198295559 + 130211771 130212225 HERVK-int 6823 + 5125 5581 43144 34 0 1 4 6 5 103 5 8 46 15 16 131 1 0 4 0 1 8 11 10 4 0 1 13 1 0 9 5 4 54 chain 9613 chr3 198295559 + 130212669 130212775 LTR5A 1029 + 0 106 71237 106 chain 13863 chr3 198295559 + 130223379 130223603 MER30 238 + 36 238 63776 34 0 1 36 38 20 11 2 0 62 3 0 38 chain 19669 chr3 198295559 + 130253716 130253925 L1HS 6032 + 5823 6032 56828 209 chain 176511 chr3 198295559 + 130294826 130296800 L1PA5 6144 + 3894 5872 10749 455 0 4 1519 chain 77860 chr3 198295559 + 130298291 130299357 MER11C 1089 + 0 1069 22127 142 19 5 99 0 9 62 0 4 58 7 6 147 55 54 85 0 1 18 0 4 5 1 0 38 0 1 127 0 1 54 1 0 144 0 1 4 chain 33414 chr3 198295559 + 130306877 130307389 L1PB2 3958 + 3343 3838 39162 20 1 0 14 8 1 61 26 22 84 1 0 72 1 0 20 0 1 38 14 13 62 4 2 22 1 0 63 chain 57780 chr3 198295559 + 130315424 130316124 L1PA6 6164 + 5457 6162 27023 31 0 2 341 3 5 277 0 1 48 chain 162566 chr3 198295559 + 130334839 130337266 L1MA2 4263 + 1187 4114 11572 110 25 7 11 0 3 41 0 1 46 0 5 41 0 1 124 1 0 166 0 7 6 6 2 121 1 0 12 3 4 4 1 0 72 3 0 48 0 1 15 2 3 51 15 166 66 4 3 106 0 11 157 3 4 42 6 3 4 0 1 29 28 29 65 1 0 17 3 4 27 0 1 66 32 33 134 1 0 436 5 361 17 13 14 31 0 1 4 1 0 37 6 3 97 7 0 47 1 0 9 chain 178839 chr3 198295559 + 130350244 130352298 L1PA6 6164 + 4087 6146 10642 556 2 0 673 0 7 823 chain 34159 chr3 198295559 + 130473539 130474015 LTR3B_ 500 + 0 483 38590 303 0 1 43 5 4 14 1 3 28 8 10 50 10 13 14 chain 43068 chr3 198295559 + 130482921 130483443 L1P2 5180 + 1686 2210 32737 7 0 1 342 4 5 169 chain 4155 chr3 198295559 + 130502670 130502736 MLT2D 439 + 298 356 90427 15 0 1 28 9 0 14 chain 51386 chr3 198295559 + 130600200 130600873 L1PA8 5853 + 5179 5853 29081 430 2 0 52 0 4 14 1 0 17 2 0 48 1 0 16 3 2 19 0 4 68 chain 499300 chr3 198295559 + 130628734 130634065 L1HS 6032 + 12 6032 3154 62 0 1 21 0 688 5248 chain 3868 chr3 198295559 + 130680294 130680341 MIR 256 + 67 114 92362 47 chain 3475 chr3 198295559 + 130720718 130720758 L1M3e 1964 + 101 141 95406 40 chain 523355 chr3 198295559 + 130804634 130810541 L1PA4 6152 + 6 5879 2126 454 6 0 116 1 0 820 1 6 916 1 2 172 38 0 315 0 4 1984 0 1 1083 chain 101806 chr3 198295559 + 130832182 130833367 L1P1 4361 + 360 1543 18085 5 2 0 1178 chain 8774 chr3 198295559 + 130856853 130856961 MER85 139 + 1 119 73050 89 0 10 19 chain 27558 chr3 198295559 + 130863591 130863944 THE1A 353 + 0 353 45502 35 7 8 66 2 1 243 chain 124404 chr3 198295559 + 130863944 130865495 THE1A-int 1579 + 0 1572 14791 385 0 1 258 1 12 66 0 9 181 0 1 4 1 0 288 1 2 77 12 11 117 0 1 33 0 1 4 9 7 114 chain 78657 chr3 198295559 + 130867338 130868231 SVA_D 2077 + 63 1325 21948 103 0 20 329 1 0 191 0 40 132 0 310 32 1 0 80 0 1 24 chain 98793 chr3 198295559 + 130868276 130869442 SVA_E 1901 + 661 1901 18434 41 2 82 29 34 0 5 17 0 18 0 1 85 0 46 6 1 0 34 0 1 132 2 1 746 1 0 13 chain 2791 chr3 198295559 + 130868348 130868382 SVA_E 1901 + 934 968 41617 34 chain 82738 chr3 198295559 + 130877350 130878294 L1PA5 6144 + 5195 6140 21078 264 0 1 680 chain 152832 chr3 198295559 + 130911599 130913256 L1PA2 6032 + 4365 6029 12181 1519 0 7 138 chain 10437 chr3 198295559 + 130957033 130957162 MER85 139 + 0 139 69542 89 0 10 40 chain 23245 chr3 198295559 + 130988686 130988970 MER51E 476 + 0 287 52008 6 0 3 278 chain 4046 chr3 198295559 + 131008490 131008659 MER58A 224 + 49 200 91118 30 108 90 31 chain 266424 chr3 198295559 + 131041808 131045185 L1P3 4156 + 3 3371 7792 121 1 2 125 42 48 18 7 6 76 0 2 5 26 8 347 0 1 628 0 3 165 1 2 70 0 2 15 4 0 608 0 1 5 0 15 241 0 2 77 0 1 41 22 3 12 7 0 68 0 1 514 0 4 131 chain 57009 chr3 198295559 + 131069373 131069987 L1PA2 6032 + 5415 6029 27262 614 chain 73092 chr3 198295559 + 131097603 131098409 L1PA3long 6157 + 4442 5250 23301 354 0 2 452 chain 2929 chr3 198295559 + 131140003 131140034 MLT1G1 539 + 0 31 100606 31 chain 20623 chr3 198295559 + 131152842 131153090 AluSc 308 + 39 284 55602 87 3 0 158 chain 24177 chr3 198295559 + 131200542 131200909 LOR1b 457 + 41 457 50528 107 1 0 27 26 74 42 14 15 71 2 3 77 chain 23980 chr3 198295559 + 131215167 131215429 L1PA5 6144 + 5878 6140 50823 262 chain 54267 chr3 198295559 + 131218897 131219567 L1PA7 6471 + 5814 6470 28130 573 39 24 46 1 2 11 chain 13787 chr3 198295559 + 131226346 131226629 L1PB3 3668 + 3361 3614 63902 28 2 1 62 3 4 22 20 4 13 3 0 8 1 0 25 3 1 37 7 3 13 1 0 13 7 4 15 chain 25615 chr3 198295559 + 131257717 131258314 L1PB1 5432 + 4860 5430 48291 142 1 0 29 1 10 20 131 117 42 2 1 15 1 0 32 0 3 8 2 1 16 3 0 15 8 0 15 1 0 5 20 16 23 8 7 16 10 8 21 1 0 4 1 0 4 chain 39516 chr3 198295559 + 131284500 131285023 MLT2A2 560 + 0 552 35003 12 1 3 34 9 11 123 1 0 80 0 6 131 2 13 16 0 9 114 chain 109167 chr3 198295559 + 131320736 131322346 L1PA16 3655 + 1978 3624 17155 100 0 2 125 29 27 202 0 1 36 4 3 201 2 1 165 4 8 36 11 13 19 2 0 12 0 2 6 10 14 31 0 2 220 7 6 79 3 1 205 0 1 26 46 74 7 1 0 21 chain 558593 chr3 198295559 + 131331477 131337625 L1PA3long 6157 + 6 6157 216 177 4 0 2604 0 1 427 1 0 595 0 1 135 0 1 844 0 1 518 0 4 843 chain 18771 chr3 198295559 + 131390719 131390921 L1PA2 6032 + 5830 6032 57822 202 chain 280084 chr3 198295559 + 131407997 131410988 L1HS 6032 + 3039 6030 7419 2991 chain 193704 chr3 198295559 + 131413650 131417251 L1PB1 5432 + 2587 5281 9939 242 403 0 177 0 1 164 0 1 154 0 1 63 0 1 136 0 1 46 30 31 82 9 7 34 2 4 63 2 4 152 7 5 6 0 3 59 1 2 47 464 7 86 1 0 292 1 0 72 18 6 83 12 9 73 0 2 101 1 2 297 45 11 4 0 1 19 27 21 9 2 0 52 2 1 12 5 4 44 chain 34322 chr3 198295559 + 131413898 131414270 L1PA2 6032 + 5658 6030 38477 372 chain 32437 chr3 198295559 + 131415543 131415985 MLT2A1 477 + 7 464 40004 162 4 1 215 28 46 33 chain 70058 chr3 198295559 + 131436722 131437711 L1MA3 4352 + 3163 4133 23982 191 0 4 30 6 9 293 10 11 224 0 3 130 6 0 35 34 13 7 3 0 20 chain 108665 chr3 198295559 + 131486033 131487456 L1PA6 6164 + 4856 6162 17222 335 30 1 50 115 13 61 0 3 94 0 3 76 0 4 368 0 3 136 3 4 155 chain 6666 chr3 198295559 + 131486451 131486534 L1PA6 6164 - 2 85 78749 83 chain 7547 chr3 198295559 + 131509109 131509202 L1PB3 3668 + 2795 2888 76006 93 chain 43189 chr3 198295559 + 131514288 131514782 MER9a2 513 + 0 494 32657 494 chain 127407 chr3 198295559 + 131514861 131516282 L1PA5 6144 + 4719 6142 14370 572 0 4 456 1 0 151 1 0 240 chain 20985 chr3 198295559 + 131597208 131597474 L1PA7 6471 + 6210 6468 55144 111 3 0 140 5 0 7 chain 32989 chr3 198295559 + 131604384 131604823 MLT2A1 477 + 0 477 39523 169 1 5 29 0 1 129 6 7 45 4 0 12 5 41 39 chain 9193 chr3 198295559 + 131629297 131629428 Tigger1 2417 + 2154 2283 72135 68 0 2 21 10 6 32 chain 53518 chr3 198295559 + 131642909 131643621 THE1C-int 1605 + 2 1597 28391 12 2 1 61 2 0 34 0 54 251 10 831 217 0 11 123 chain 71886 chr3 198295559 + 131662550 131663477 L1PA8 5853 + 4928 5853 23572 81 0 2 11 7 8 181 0 1 122 7 8 222 1 0 46 2 0 63 7 6 9 1 0 56 1 0 16 1 0 93 chain 50253 chr3 198295559 + 131700695 131701257 L1PA5 6144 + 5584 6143 29465 4 0 1 540 4 0 14 chain 41667 chr3 198295559 + 131706478 131707105 MER4B 649 + 1 641 33580 84 1 0 112 0 13 29 17 19 108 6 1 44 15 9 87 0 12 43 11 10 61 1 0 8 chain 5459 chr3 198295559 + 131731694 131731782 MER3 215 + 70 184 83405 50 10 36 28 chain 3554 chr3 198295559 + 131754752 131754994 MER119 576 + 5 278 94820 11 2 0 33 174 207 22 chain 26111 chr3 198295559 + 131756744 131757097 THE1A 353 + 0 353 47554 16 7 8 60 0 1 6 1 0 18 5 4 240 chain 126592 chr3 198295559 + 131757097 131758655 THE1A-int 1579 + 0 1568 14467 17 11 10 326 0 1 623 8 17 322 3 4 248 chain 27049 chr3 198295559 + 131758665 131759019 THE1A 353 + 0 353 46201 109 2 1 243 chain 24766 chr3 198295559 + 131775424 131775790 THE1B 368 + 0 368 49637 63 8 1 105 1 0 29 35 45 125 chain 51866 chr3 198295559 + 131875241 131875836 L1PA4 6152 + 5556 6143 28918 107 6 1 395 3 0 84 chain 112892 chr3 198295559 + 131884977 131887052 THE1B-int 1605 + 16 1605 16685 355 512 0 43 0 5 11 0 25 223 43 38 65 34 27 234 8 9 59 0 2 145 1 3 146 22 24 73 0 1 101 chain 24551 chr3 198295559 + 131887052 131887428 THE1B 368 + 0 368 49944 15 2 0 29 11 12 51 9 10 52 31 24 100 1 0 75 chain 148624 chr3 198295559 + 131951531 131953257 SVA_D 2077 + 4 2077 12447 9 5 0 16 3 7 852 2 271 16 12 13 45 1 79 76 0 1 4 10 9 27 0 1 629 1 0 18 chain 466488 chr3 198295559 + 131963567 131969366 L1PA8 5853 + 50 5847 3947 22 2 0 10 1 0 11 48 15 129 19 22 42 15 27 154 0 1 113 0 4 1793 0 3 444 0 1 371 9 1 104 0 3 67 0 4 379 0 1 186 1 0 6 0 1 173 14 32 46 2 1 95 0 1 15 8 7 16 1 0 159 0 5 7 5 0 488 8 11 32 2 1 176 2 0 154 0 1 176 10 9 39 2 0 71 1 0 9 8 7 49 1 0 16 1 0 87 chain 25936 chr3 198295559 + 131992680 131993052 THE1C 375 + 0 375 47812 183 46 50 116 1 0 26 chain 7400 chr3 198295559 + 132002961 132003047 MER5A1 166 + 59 145 76394 86 chain 46694 chr3 198295559 + 132080374 132080935 MLT2A2 560 + 0 560 30775 78 0 1 231 2 0 250 chain 19161 chr3 198295559 + 132097225 132097752 L1MA2 4263 + 3819 4218 57387 40 1 0 97 11 9 82 2 0 7 11 6 16 1 0 29 198 83 16 4 2 12 chain 442471 chr3 198295559 + 132099788 132104815 L1PA4 6152 + 0 6143 4531 83 0 1106 996 0 2 132 5 6 5 1 0 34 0 16 8 12 0 1294 2 0 535 0 1 133 0 4 1773 0 1 14 chain 24603 chr3 198295559 + 132109148 132109478 THE1C 375 + 0 355 49863 125 3 0 10 0 4 41 0 1 13 5 27 45 0 1 88 chain 110234 chr3 198295559 + 132122335 132123690 L1PA8A 6298 + 3449 4806 17047 279 3 4 139 0 1 934 chain 109705 chr3 198295559 + 132127340 132128562 L1PA3long 6157 + 4933 6157 17103 121 6 7 176 0 1 919 chain 538274 chr3 198295559 + 132136909 132143213 L1PA3long 6157 + 39 6149 1440 113 0 1 161 0 4 458 0 128 3453 0 4 645 331 0 1143 chain 29026 chr3 198295559 + 132141753 132142069 AluYa5 310 + 0 310 43282 118 6 0 192 chain 36690 chr3 198295559 + 132151473 132151906 L1PA7 6471 + 6035 6469 36958 102 1 0 176 4 6 150 chain 12862 chr3 198295559 + 132176860 132177059 L1PA15-16 3068 + 656 857 65327 20 10 6 30 3 0 5 3 11 44 0 1 84 chain 26334 chr3 198295559 + 132177059 132177499 L1PA16 3655 + 3186 3619 47222 18 1 0 13 12 24 52 13 11 247 0 12 14 3 0 15 12 0 4 8 0 7 5 0 16 chain 3184 chr3 198295559 + 132193227 132193261 U3 216 + 5 39 98034 34 chain 18812 chr3 198295559 + 132209269 132209497 L1PA7 6471 + 6242 6469 57767 210 1 0 17 chain 20415 chr3 198295559 + 132224835 132225113 Tigger3b 1229 + 291 569 55868 28 0 3 7 7 1 208 0 4 20 1 0 7 chain 17928 chr3 198295559 + 132276966 132277188 LTR10E 629 + 0 281 58719 18 1 0 138 0 60 65 chain 4748 chr3 198295559 + 132280616 132280678 U13_ 108 + 0 62 86969 62 chain 55175 chr3 198295559 + 132281174 132281915 MER4E1 777 + 0 769 27820 13 2 5 103 1 5 190 0 2 218 14 15 103 13 31 84 chain 29452 chr3 198295559 + 132286199 132286698 MER41B 635 + 0 595 42670 119 16 17 16 8 92 10 2 0 30 5 8 5 3 0 146 19 23 83 15 24 22 chain 38173 chr3 198295559 + 132294972 132295434 LTR2 463 + 0 463 35930 146 1 2 315 chain 420860 chr3 198295559 + 132304870 132309950 Harlequin-int 5206 + 125 5206 4868 10 3 0 8 2 0 151 3 2 187 3 0 38 9 1 4 0 1 155 1 0 189 1 0 336 0 3 101 0 4 239 0 1 104 0 3 513 2 0 114 2 0 278 2 0 129 0 1 37 0 1 512 3 2 40 16 9 6 1 0 928 3 0 102 3 17 152 11 12 100 10 19 572 chain 39939 chr3 198295559 + 132309951 132310414 LTR2 463 + 0 463 34707 463 chain 8251 chr3 198295559 + 132322731 132322833 MSTC 436 + 8 111 74282 45 0 1 57 chain 9418 chr3 198295559 + 132326143 132326265 MER20 218 + 94 217 71659 61 1 2 60 chain 19530 chr3 198295559 + 132383819 132384127 L1PA16 3655 + 3337 3619 56984 49 9 7 128 0 1 57 3 0 7 27 10 7 5 0 16 chain 54488 chr3 198295559 + 132384402 132385011 L1PA4 6152 + 5455 6065 28051 362 1 2 246 chain 7005 chr3 198295559 + 132385014 132385092 L1PA4 6152 + 6065 6143 77586 78 chain 78463 chr3 198295559 + 132396247 132397368 LTR12D 1347 + 0 1347 21990 298 2 38 200 42 32 131 19 12 119 42 45 59 0 200 149 0 4 60 chain 23028 chr3 198295559 + 132403697 132404079 THE1D 372 + 0 372 52315 15 0 2 15 1 0 16 18 0 26 17 18 84 0 3 7 15 14 25 1 0 46 0 5 96 chain 11298 chr3 198295559 + 132444129 132444291 MER1B 344 + 173 339 68085 47 4 0 47 6 14 58 chain 75881 chr3 198295559 + 132571653 132572673 L1PA13 3608 + 2463 3488 22618 134 0 4 68 17 8 297 0 2 88 0 21 43 1 0 32 1 0 113 2 0 61 1 0 54 1 0 8 2 0 45 11 7 18 1 0 22 chain 8018 chr3 198295559 + 132573281 132573472 MER33 330 + 32 231 74842 23 74 79 45 0 3 49 chain 158984 chr3 198295559 + 132584711 132586493 L1PA4 6152 + 4356 6143 11809 407 0 1 371 6 10 998 chain 7858 chr3 198295559 + 132604250 132604359 MER44A 345 + 147 259 75234 36 1 4 72 chain 472673 chr3 198295559 + 132606571 132615818 L1PA7 6471 + 741 6467 3796 475 1 3 21 0 4 14 0 3 135 0 1 656 0 4 118 1 0 85 2 0 375 16 0 60 1 0 125 0 1 152 0 1 436 1 2 135 5 9 20 1 6 98 0 1 239 0 3 350 0 3 110 3232 0 171 315 0 398 2 1 1183 1 0 226 0 14 78 0 1 9 chain 261073 chr3 198295559 + 132610207 132613116 L1PA4 6152 + 2968 5881 7938 118 0 4 2791 chain 2517 chr3 198295559 + 132621252 132621297 tRNA-Met_ 45 + 0 44 103570 19 8 7 18 chain 77634 chr3 198295559 + 132633875 132634748 L1PA4 6152 + 4958 5833 22174 263 16 18 594 chain 27202 chr3 198295559 + 132634748 132635056 L1PA4 6152 + 5834 6143 45959 168 0 1 140 chain 82752 chr3 198295559 + 132648796 132649792 LTR5B 1012 + 0 1012 21074 8 0 4 122 0 14 92 5 1 762 0 2 7 chain 28235 chr3 198295559 + 132651669 132652055 THE1B-int 1605 + 1208 1605 44510 51 0 1 37 8 13 37 2 1 171 0 5 18 2 3 60 chain 20323 chr3 198295559 + 132652055 132652426 THE1B 368 + 0 366 55982 63 30 23 83 73 75 122 chain 17473 chr3 198295559 + 132688037 132688324 Tigger4b 360 + 1 297 59267 119 10 0 12 32 47 40 5 9 69 chain 3616 chr3 198295559 + 132749494 132749548 MLT1B 390 + 281 350 94306 17 1 0 23 0 16 13 chain 23036 chr3 198295559 + 132752091 132752367 AluSc 308 + 7 283 52308 276 chain 16660 chr3 198295559 + 132781295 132781555 L1PA8 5853 + 5598 5853 60199 10 2 0 6 0 4 57 17 13 52 2 1 16 7 5 91 chain 4265 chr3 198295559 + 132789479 132789532 MLT1A 405 + 322 373 89735 32 2 0 19 chain 157879 chr3 198295559 + 132797777 132799563 L1PA4 6152 + 2293 4082 11888 218 0 4 656 7 6 905 chain 6550 chr3 198295559 + 132809932 132810002 L1HS 6032 + 3113 3183 79158 70 chain 5235 chr3 198295559 + 132811386 132811542 Ricksha_c 1012 + 303 497 84530 22 83 121 51 chain 30727 chr3 198295559 + 132826826 132827225 L1PB1 5432 + 3937 4343 41368 73 2 12 78 7 4 239 chain 45253 chr3 198295559 + 132836680 132837614 PRIMA4_LTR 623 + 0 623 31446 87 0 1 91 1 0 9 4 0 39 320 0 27 3 4 71 1 0 206 5 18 70 chain 14928 chr3 198295559 + 132868522 132868757 MLT2A1 477 + 0 234 62356 97 2 1 22 11 12 37 4 1 11 0 1 22 1 2 28 chain 9175 chr3 198295559 + 132888361 132888493 L1PA7 6471 + 6184 6310 72176 54 10 4 68 chain 12816 chr3 198295559 + 132888495 132888654 L1PA7 6471 + 6310 6467 65423 149 2 0 8 chain 38165 chr3 198295559 + 132894774 132895228 L1PA6 6164 + 5704 6162 35938 122 0 1 191 0 1 132 0 2 9 chain 85167 chr3 198295559 + 132914317 132915256 L1PA4 6152 + 4940 5880 20591 877 0 1 62 chain 20391 chr3 198295559 + 132931801 132932159 THE1B 368 + 0 368 55897 13 2 0 27 8 21 111 30 31 62 30 28 75 chain 11119 chr3 198295559 + 132935172 132935323 MER1B 344 + 103 250 68377 24 0 3 5 3 0 85 4 0 30 chain 453388 chr3 198295559 + 132956427 132962032 L1PA7 6471 + 21 6459 4297 177 0 1 204 39 23 439 27 37 265 0 2 79 0 6 3 6 0 192 10 0 725 0 1 1375 0 4 57 0 1 401 0 841 773 9 5 69 0 2 263 2 1 120 0 2 370 chain 42691 chr3 198295559 + 132978979 132979528 MER41A 554 + 2 554 32950 37 7 8 138 8 6 209 0 5 4 1 0 145 chain 8946 chr3 198295559 + 133010502 133010603 MSTA-int 1630 + 604 705 72677 101 chain 6437 chr3 198295559 + 133014294 133014370 MSTA-int 1630 + 1547 1623 79549 76 chain 27987 chr3 198295559 + 133108670 133108999 L1PA4 6152 + 5824 6151 44889 173 5 6 133 3 0 15 chain 7780 chr3 198295559 + 133134448 133134543 MER21C 908 + 3 98 75418 95 chain 13062 chr3 198295559 + 133138397 133138617 MER30 238 + 8 238 65001 14 15 12 73 8 0 10 3 21 14 0 6 34 3 0 46 chain 49804 chr3 198295559 + 133168462 133169110 LTR12_ 688 + 0 665 29637 77 29 44 21 0 1 338 0 1 183 chain 26603 chr3 198295559 + 133172745 133173091 THE1B 368 + 0 363 46828 39 1 16 87 0 4 26 1 0 20 2 0 121 0 1 49 chain 484323 chr3 198295559 + 133173706 133179185 L1PA4 6152 + 0 5520 3545 126 1 15 301 5 6 634 0 1 609 0 4 419 0 1 659 3 8 273 0 2 451 0 1 222 1 0 232 0 4 670 0 5 661 0 4 212 chain 107665 chr3 198295559 + 133234303 133235505 L1PA3long 6157 + 3697 4898 17369 554 3 0 41 0 2 604 chain 34805 chr3 198295559 + 133305142 133305518 L1PA2 6032 + 5647 6023 38156 376 chain 271198 chr3 198295559 + 133320960 133324695 L1PB2 3958 + 33 3731 7681 15 1 0 8 14 10 17 5 0 21 9 4 32 2 0 26 0 2 5 13 10 58 6 5 366 4 20 24 27 0 353 0 1 239 1 0 28 0 3 60 1 2 242 6 7 54 9 12 112 0 1 191 0 6 21 5 6 27 0 1 282 28 10 109 3 4 30 1 2 25 0 1 439 1 0 280 1 5 98 2 0 56 1 0 14 2 1 61 2 0 12 4 0 94 14 14 58 1 0 64 1 0 50 chain 11048 chr3 198295559 + 133355958 133356106 L1PB2 3958 + 2204 2352 68491 148 chain 44990 chr3 198295559 + 133356106 133356676 L1PB2 3958 + 2353 2924 31589 137 3 4 430 chain 12056 chr3 198295559 + 133356677 133356831 L1PB2 3958 + 2924 3081 66747 13 0 3 141 chain 14024 chr3 198295559 + 133356831 133357020 L1PB2 3958 + 3083 3283 63558 133 0 4 37 3 10 16 chain 2767 chr3 198295559 + 133357046 133357078 L1PB2 3958 + 3326 3358 101847 32 chain 4958 chr3 198295559 + 133357096 133357157 L1PB2 3958 + 3378 3439 85848 61 chain 16396 chr3 198295559 + 133357174 133357394 L1PB2 3958 + 3451 3672 60527 103 1 0 28 0 3 32 1 0 55 chain 2651 chr3 198295559 + 133357405 133357435 L1PB2 3958 + 3682 3712 102717 30 chain 9194 chr3 198295559 + 133357435 133357563 L1PB2 3958 + 3713 3838 72132 40 2 0 22 1 0 63 chain 218932 chr3 198295559 + 133430512 133433323 HERVH-int 3825 + 929 3825 9069 351 7 4 188 1 0 213 4 31 299 0 10 116 0 1 7 0 1 199 0 4 512 2 0 6 0 2 101 166 1 40 1 0 105 8 218 260 0 2 225 chain 34425 chr3 198295559 + 133434532 133434928 LTR7 482 + 0 429 38413 266 0 31 89 0 2 41 chain 5588 chr3 198295559 + 133477931 133478024 MER53 195 + 5 97 82851 59 12 11 22 chain 198888 chr3 198295559 + 133480720 133482992 L1PA6 6164 + 3856 6146 9749 6 0 4 493 0 1 342 0 6 606 0 1 239 0 3 244 1 3 189 10 12 10 2 0 59 0 1 71 chain 559710 chr3 198295559 + 133551337 133557483 L1PA3long 6157 + 2 6157 179 206 0 7 526 0 1 2434 0 1 2980 chain 4969 chr3 198295559 + 133558207 133558375 LTR32 486 + 258 475 85809 27 93 142 48 chain 48020 chr3 198295559 + 133639040 133639599 L1PA6 6164 + 5584 6156 30287 369 0 13 190 chain 4460 chr3 198295559 + 133675302 133675353 MER58B 340 + 136 187 88559 51 chain 529397 chr3 198295559 + 133681221 133687356 L1PA5 6144 + 0 6143 1861 1170 9 0 358 0 2 155 0 4 504 0 3 117 2 1 850 1 0 680 0 1 245 0 2 355 0 3 209 5 7 304 0 1 4 1 0 563 5 9 585 3 1 10 chain 8589 chr3 198295559 + 133732254 133732357 LTR12D 1347 + 584 687 73473 103 chain 419896 chr3 198295559 + 133735367 133740379 L1PA7 6471 + 1365 6356 4878 61 0 1 168 0 3 6 3 0 29 0 2 28 28 26 338 0 1 108 0 1 328 0 1 19 2 0 35 0 2 110 12 0 69 2 0 395 0 4 384 7 2 60 1 5 21 0 4 369 0 1 1197 2 1 481 0 3 31 30 9 688 chain 29243 chr3 198295559 + 133771456 133771769 AluYb8 318 + 1 314 42976 313 chain 9640 chr3 198295559 + 133784631 133784777 MER1B 344 + 186 339 71180 31 3 0 50 9 19 53 chain 7811 chr3 198295559 + 133784939 133785025 SVA_F 1814 + 873 1024 40228 14 0 1 14 0 64 58 chain 85357 chr3 198295559 + 133785025 133786232 SVA_F 1814 + 664 1814 20557 41 6 46 17 5 134 45 0 15 240 149 0 69 92 0 543 chain 9106 chr3 198295559 + 133785379 133785528 SVA_F 1814 + 863 1026 43276 17 0 1 67 0 15 38 1 0 10 1 0 15 chain 3728 chr3 198295559 + 133785597 133785658 SVA_F 1814 + 1095 1154 43276 10 0 1 13 1 0 8 0 1 4 3 0 22 chain 25350 chr3 198295559 + 133788096 133788555 MER51B 395 + 8 395 48709 22 22 9 50 40 0 31 25 1 124 5 4 37 1 3 44 1 5 57 chain 24868 chr3 198295559 + 133796369 133796722 MER51B 395 + 0 395 49496 33 20 7 49 1 60 5 3 0 91 1 0 150 chain 3810 chr3 198295559 + 133869747 133869993 MLT1G1 539 + 247 516 92773 32 186 209 28 chain 11287 chr3 198295559 + 133921949 133922082 L1PA7 6471 + 6182 6315 68098 133 chain 12596 chr3 198295559 + 133922085 133922241 L1PA7 6471 + 6316 6469 65804 141 3 0 12 chain 6890 chr3 198295559 + 133922241 133922338 L1MD2 1676 + 1300 1396 77032 22 1 0 34 1 0 5 0 1 34 chain 39281 chr3 198295559 + 133988858 133989387 MER51C 639 + 9 613 35160 48 0 71 173 1 0 92 6 14 10 4 5 141 4 0 50 chain 37468 chr3 198295559 + 134019873 134020335 LTR2 463 + 0 463 36425 362 12 13 88 chain 425016 chr3 198295559 + 134022071 134027181 Harlequin-int 5206 + 125 5206 4812 7 0 2 9 2 0 150 0 2 80 0 1 107 4 0 528 3 4 160 35 5 112 2 1 429 2 1 164 0 3 128 0 1 241 1 2 431 15 4 615 0 1 363 4 0 309 0 7 170 81 82 212 0 1 139 0 4 274 1 0 332 chain 37422 chr3 198295559 + 134027181 134027643 LTR2 463 + 0 463 36464 360 15 16 87 chain 9159 chr3 198295559 + 134047203 134047319 MER101 471 + 351 467 72213 116 chain 10389 chr3 198295559 + 134127086 134127319 L1MB3 1562 + 1354 1552 69637 59 66 33 22 1 0 54 7 6 24 chain 32373 chr3 198295559 + 134129584 134130112 MER67A 545 + 4 545 40059 22 2 0 66 2 1 61 2 0 49 7 9 58 3 0 48 3 2 46 3 0 5 19 31 25 1 0 4 6 15 16 0 2 17 0 1 63 chain 238043 chr3 198295559 + 134139884 134142740 L1P2 5180 + 2 2864 8522 148 1 0 43 2 1 53 12 12 148 2 1 5 0 1 101 1 0 48 10 0 220 1 16 112 0 1 168 0 3 432 0 1 199 0 1 449 0 1 20 1 0 128 7 5 545 chain 34343 chr3 198295559 + 134147914 134148406 MLT2A1 477 + 0 477 38460 169 4 1 25 27 17 128 1 3 42 5 1 36 5 1 44 0 4 6 chain 139674 chr3 198295559 + 134167165 134168780 L1PA5 6144 + 4506 6144 13122 70 0 47 35 1 0 281 29 1 357 0 4 678 0 1 164 chain 60382 chr3 198295559 + 134199772 134200560 LTR12 884 + 0 884 26267 118 1 92 25 38 0 41 2 43 18 0 1 39 2 0 194 0 4 157 1 0 152 chain 13121 chr3 198295559 + 134228301 134228850 L1MA6 2487 + 2138 2484 64895 6 0 2 83 17 1 48 2 0 13 1 0 6 90 43 39 220 81 24 chain 19332 chr3 198295559 + 134397159 134397417 AluY 311 + 51 311 57198 80 18 20 160 chain 25955 chr3 198295559 + 134403106 134403465 THE1B 368 + 0 368 47785 169 1 0 29 10 11 4 0 1 14 13 21 119 chain 124270 chr3 198295559 + 134555007 134556366 L1PA3long 6157 + 3879 5238 14801 1359 chain 22429 chr3 198295559 + 134589559 134589968 L1PA15 4387 + 3974 4366 53234 39 23 24 67 1 0 26 1 0 50 6 5 22 4 0 10 2 1 41 14 11 44 3 1 12 6 1 13 0 1 14 1 0 10 chain 30342 chr3 198295559 + 134595069 134595442 THE1C 375 + 0 371 41717 258 1 0 92 1 0 21 chain 80349 chr3 198295559 + 134701577 134702887 L1PA11 4918 + 3020 4567 21563 294 4 0 17 135 2 326 3 0 6 0 1 30 8 1 188 29 425 21 1 6 56 2 1 65 15 13 16 1 0 20 44 31 15 1 0 13 chain 24339 chr3 198295559 + 134874168 134874470 L1PA8A 6298 + 5982 6291 50265 175 0 1 96 2 8 29 chain 18361 chr3 198295559 + 134955521 134955716 L1HS 6032 + 5418 5613 58286 195 chain 6852 chr3 198295559 + 135046667 135046751 MER5A 189 + 100 184 78134 84 chain 40681 chr3 198295559 + 135102619 135103141 L1PA8 5853 + 5335 5853 34160 143 0 1 36 0 1 48 1 0 45 2 0 67 4 3 8 2 1 11 0 1 40 2 1 19 1 0 93 chain 50323 chr3 198295559 + 135202680 135203412 L1PA8 5853 + 5153 5853 29442 181 1 2 144 0 2 80 1 0 46 2 0 37 48 20 13 23 21 40 3 2 19 1 0 93 chain 170050 chr3 198295559 + 135282895 135284776 L1PA2 6032 + 4152 6032 11101 1027 1 0 853 chain 60681 chr3 198295559 + 135341470 135342146 L1PA4 6152 + 5475 6151 26183 676 chain 40402 chr3 198295559 + 135386199 135386672 L1PA4 6152 + 5670 6143 34382 329 7 0 7 0 7 130 chain 95509 chr3 198295559 + 135400743 135401779 L1PA2 6032 + 4197 5233 18841 1036 chain 24956 chr3 198295559 + 135427764 135428056 L1PA5 6144 + 5853 6144 49353 277 4 3 11 chain 235892 chr3 198295559 + 135435779 135438386 L1PA3long 6157 + 3302 5909 8574 2607 chain 66787 chr3 198295559 + 135438386 135439146 L1HS 6032 + 971 1731 24642 760 chain 13692 chr3 198295559 + 135465032 135465213 L1P3 4156 + 3958 4136 64025 149 2 0 7 2 1 21 chain 3063 chr3 198295559 + 135480252 135480290 MER63A 208 + 164 202 99194 38 chain 95472 chr3 198295559 + 135522170 135523588 L1PA14 3548 + 2079 3465 18846 418 5 7 22 11 10 153 1 0 251 2 0 13 2 0 22 0 1 8 1 0 16 2 0 5 2 0 98 19 15 13 2 0 6 1 0 80 23 22 93 1 0 11 5 1 35 4 2 12 1 0 5 1 0 14 6 5 38 6 0 10 chain 553802 chr3 198295559 + 135584725 135590755 L1PA2 6032 + 2 6032 497 320 0 3 39 0 2 117 3 4 1049 0 1 1677 4 0 1165 3 0 1653 chain 92978 chr3 198295559 + 135592509 135593717 L1PA8 5853 + 4656 5853 19181 55 4 0 295 8 7 372 0 2 143 1 0 34 1 0 44 2 0 76 13 11 45 2 1 19 2 1 92 chain 5004 chr3 198295559 + 135594295 135594435 MER58A 224 + 45 186 85643 17 67 68 56 chain 419247 chr3 198295559 + 135604242 135609054 L1PA5 6144 + 3 5044 4890 862 0 3 458 28 29 638 0 1 501 0 222 1409 0 1 217 0 4 141 3 0 555 chain 108503 chr3 198295559 + 135611928 135613452 THE1B-int 1605 + 0 1605 17251 86 0 1 19 1 4 137 49 55 93 0 64 171 32 33 81 42 10 15 0 33 275 1 2 64 4 6 426 0 2 28 chain 553219 chr3 198295559 + 135658603 135664608 L1PA2 6032 + 0 6031 536 1242 1 18 2860 0 8 1732 0 1 170 chain 26239 chr3 198295559 + 135675886 135676261 MER4E 760 + 389 752 47361 12 0 1 5 1 0 3 1 0 107 24 13 222 chain 87284 chr3 198295559 + 135683812 135685167 L1MA3 4352 + 2995 4321 20174 33 28 29 123 0 4 87 0 4 308 0 1 72 5 6 231 1 0 163 84 68 75 1 3 15 22 6 12 4 0 19 7 5 23 1 0 6 1 0 29 1 0 4 chain 128457 chr3 198295559 + 135700077 135701873 L1PA15 4387 + 2565 4304 14228 445 0 1 11 41 5 142 4 0 456 0 3 170 16 14 15 4 0 40 1 0 24 3 1 41 1 0 171 2 1 25 1 0 55 1 0 16 4 0 15 2 1 39 17 14 34 chain 32081 chr3 198295559 + 135744104 135744545 MLT2A1 477 + 2 477 40286 110 0 1 55 9 6 5 0 1 24 0 1 179 25 59 34 chain 3257 chr3 198295559 + 135760605 135760643 MLT2B1 522 + 484 522 97414 38 chain 144975 chr3 198295559 + 135775080 135777185 L1PA15 4387 + 2214 4327 12692 63 0 1 27 1 0 815 10 28 21 3 0 201 4 3 311 0 5 4 0 1 87 12 13 19 2 0 17 13 8 53 7 5 10 2 1 11 15 14 131 1 2 39 1 0 26 8 9 41 10 9 16 23 20 27 21 18 27 14 18 12 chain 8064 chr3 198295559 + 135822507 135822595 L1HS 6032 + 8 96 74297 88 chain 503405 chr3 198295559 + 135822595 135828130 L1PA3long 6157 + 620 6157 3016 1929 0 2 617 4 3 2236 1 0 415 0 2 333 chain 27325 chr3 198295559 + 135854729 135855198 L1PB 1623 + 1164 1585 45792 143 4 0 139 1 0 7 2 1 30 8 0 17 11 7 8 1 0 8 56 29 22 2 0 10 chain 6500 chr3 198295559 + 135895863 135896051 MER3 215 + 6 207 79345 42 36 37 21 50 62 39 chain 3806 chr3 198295559 + 135917262 135917391 MER96 175 + 0 175 92796 23 22 23 25 38 83 21 chain 257973 chr3 198295559 + 135935348 135938267 HERV17-int 4347 + 1427 4347 8025 41 1 0 1372 0 1 1106 1 2 398 chain 27601 chr3 198295559 + 135938581 135938908 LTR17 781 + 0 326 45453 32 8 7 287 chain 26102 chr3 198295559 + 136047229 136047619 L1PA16 3655 + 3173 3568 47572 26 28 33 57 3 1 189 1 3 86 chain 40819 chr3 198295559 + 136058081 136058743 L1PA13 3608 + 2695 3448 34082 52 1 12 14 13 77 54 0 13 146 14 18 51 1 0 20 0 2 6 1 0 96 20 18 41 0 9 12 1 0 16 11 9 24 2 1 10 2 0 47 2 0 5 chain 111655 chr3 198295559 + 136062776 136064018 L1PA4 6152 + 4495 5742 16856 483 1 0 318 0 6 440 chain 24710 chr3 198295559 + 136085109 136085465 THE1B 368 + 2 368 49710 167 1 0 11 21 34 16 1 0 10 1 0 128 chain 430507 chr3 198295559 + 136114707 136120102 L1PA8 5853 + 108 5591 4741 52 1 0 146 0 4 11 7 23 201 0 2 82 22 41 270 0 2 5 14 12 159 6 11 10 1 0 354 0 2 24 4 1 28 1 6 352 0 2 71 1 0 295 12 16 256 0 1 258 0 5 119 0 4 241 0 3 383 1 0 130 1 0 107 0 2 360 0 3 41 0 4 524 0 1 158 1 4 58 0 2 39 0 3 11 0 2 210 0 1 153 1 5 186 1 0 27 chain 519627 chr3 198295559 + 136126021 136132171 L1PA6 6164 + 0 6162 2291 145 6 25 67 0 2 261 25 5 12 0 2 48 1 0 774 7 11 973 5 0 21 0 1 298 0 1 539 2 0 4 0 1 76 0 4 483 0 3 242 1 0 326 1 0 40 0 8 450 0 2 202 2 0 173 6 0 113 0 4 368 4 7 14 9 7 298 2 0 152 chain 24482 chr3 198295559 + 136140465 136140763 AluSp 311 + 2 297 50058 27 5 2 266 chain 19105 chr3 198295559 + 136154926 136155192 AluSc 308 + 0 263 57439 20 7 6 152 1 0 50 10 9 26 chain 29543 chr3 198295559 + 136168380 136168766 L1PA7 6471 + 6079 6469 42554 228 0 7 6 6 0 33 1 6 90 7 5 15 chain 22989 chr3 198295559 + 136198486 136200549 L1PA16 3655 + 2772 3577 52378 4 0 1 126 0 3 11 1 0 47 1729 463 41 2 7 102 chain 3323 chr3 198295559 + 136216724 136216807 MER8 282 + 0 133 96826 33 34 84 16 chain 552916 chr3 198295559 + 136224307 136230437 L1PA3long 6157 + 11 6157 548 1082 0 3 576 0 1 1782 14 0 182 16 37 1207 0 4 422 0 1 849 chain 2611 chr3 198295559 + 136239520 136239567 LTR16B2 458 + 245 291 102928 27 9 8 11 chain 20138 chr3 198295559 + 136339273 136339521 AluSc 308 + 14 279 56205 20 0 17 228 chain 42766 chr3 198295559 + 136457041 136457660 LTR14B 630 + 9 630 32905 154 1 0 10 0 1 88 0 11 19 0 25 72 3 11 24 31 1 11 8 0 112 4 0 82 chain 450866 chr3 198295559 + 136465951 136471131 L1PA5 6144 + 926 6144 4374 106 0 1 1069 6 1 845 0 3 673 13 34 6 0 2 6 2 0 534 0 3 1446 0 1 10 0 1 143 0 1 188 0 7 120 2 7 11 chain 71005 chr3 198295559 + 136514248 136515068 L1PA6 6164 + 5341 6162 23758 674 0 1 146 chain 75052 chr3 198295559 + 136531103 136531923 L1PA2 6032 + 5212 6032 22831 470 1 0 8 0 1 341 chain 2802 chr3 198295559 + 136556089 136556119 L1MC2 1988 + 1958 1988 101635 30 chain 7315 chr3 198295559 + 136588208 136588305 HY4 93 + 0 90 76617 74 7 0 16 chain 38227 chr3 198295559 + 136618032 136618489 LTR10F 562 + 0 554 35890 35 1 10 99 0 87 273 0 1 49 chain 8422 chr3 198295559 + 136698705 136698847 L1PB2 3958 + 3699 3836 73856 21 0 3 30 8 6 16 1 0 50 5 0 11 chain 170199 chr3 198295559 + 136722664 136724618 SVA_D 2077 + 4 2077 11094 15 0 3 890 0 86 36 1 2 7 0 1 213 0 1 4 10 37 8 0 1 80 0 1 4 18 17 208 2 1 458 chain 1298 chr3 198295559 + 136762130 136762282 THE1B 368 + 1 152 53004 103 1 0 48 chain 8684 chr3 198295559 + 136762300 136762487 THE1B 368 + 169 368 73248 29 17 19 11 39 50 59 1 0 31 chain 103159 chr3 198295559 + 136762487 136764075 THE1B-int 1605 + 0 1590 17936 25 3 0 5 5 8 204 0 1 88 0 1 97 27 52 80 169 76 24 20 38 180 0 6 82 1 11 82 3 0 34 9 29 148 0 3 62 0 1 47 0 13 193 chain 1767 chr3 198295559 + 136764569 136764776 THE1B 368 + 152 368 53004 17 1 0 29 35 45 125 chain 21781 chr3 198295559 + 136799948 136800354 MSTA 426 + 0 426 54117 62 4 14 24 25 29 15 8 12 38 43 47 32 1 0 31 6 5 117 chain 93175 chr3 198295559 + 136875469 136876502 L1P1 4361 + 2297 3334 19160 955 0 4 78 chain 34578 chr3 198295559 + 136879574 136879997 L1PA6 6164 + 5719 6162 38301 207 0 18 158 1 3 57 chain 13642 chr3 198295559 + 136918595 136918786 MER30 238 + 24 238 64104 82 8 27 26 0 1 36 0 3 39 chain 7801 chr3 198295559 + 136924767 136924884 MER85 139 + 7 139 75375 51 1 4 34 5 17 26 chain 25566 chr3 198295559 + 137100091 137100573 L1PA15 4387 + 3890 4356 48376 43 1 0 8 1 2 161 1 0 26 16 15 37 4 3 19 9 5 8 1 0 26 29 30 20 3 1 20 3 1 15 8 3 23 chain 11161 chr3 198295559 + 137112874 137113013 Tigger3b 1229 + 955 1095 68327 61 0 1 78 chain 4230 chr3 198295559 + 137136046 137136183 Kanga1d 558 + 150 301 89942 38 73 87 26 chain 299775 chr3 198295559 + 137140165 137143516 L1PA4 6152 + 2789 6152 6838 319 0 10 1771 0 5 1177 0 1 74 4 0 6 chain 518698 chr3 198295559 + 137211033 137217162 L1PA6 6164 + 0 6156 2326 237 18 20 261 0 2 47 1 0 456 1 0 208 0 1 204 1 0 6 0 1 612 0 2 156 0 2 80 0 3 27 4 0 400 6 4 431 4 0 361 0 1 285 0 11 539 0 8 949 0 5 10 0 1 640 4 6 33 7 6 141 chain 4017 chr3 198295559 + 137240803 137240852 Tigger3a 397 + 143 192 91329 49 chain 13585 chr3 198295559 + 137241251 137241412 Tigger3a 397 + 143 304 64189 161 chain 142609 chr3 198295559 + 137251038 137252627 L1PA3long 6157 + 4537 6126 12884 1589 chain 79121 chr3 198295559 + 137310366 137311225 L1PA3long 6157 + 3942 4801 21832 859 chain 29955 chr3 198295559 + 137337296 137337671 THE1C 375 + 0 375 42097 375 chain 114100 chr3 198295559 + 137337671 137339232 THE1C-int 1605 + 0 1596 16543 18 3 5 416 15 22 201 0 3 6 62 72 273 1 14 368 0 1 4 4 2 62 0 1 128 chain 101016 chr3 198295559 + 137353524 137354601 L1HS 6032 + 4955 6032 18182 1077 chain 121931 chr3 198295559 + 137364587 137365972 L1PA4 6152 + 4138 5521 15199 666 4 0 160 0 1 129 1 2 425 chain 30853 chr3 198295559 + 137378358 137378847 L1PA11 4918 + 4110 4567 41265 108 0 9 101 20 0 67 2 1 11 2 0 68 2 0 13 1 0 21 44 30 15 1 0 13 chain 46404 chr3 198295559 + 137379856 137380437 L1PA10 4194 + 3520 4110 30884 88 0 6 316 0 2 118 0 1 59 chain 23592 chr3 198295559 + 137386964 137387325 THE1D 372 + 0 372 51445 162 0 2 5 40 55 83 5 0 33 1 0 32 chain 323577 chr3 198295559 + 137394814 137398674 L1PA6 6164 + 2298 6162 6346 35 0 1 38 0 1 226 0 1 198 0 2 112 1 2 275 0 1 128 1 0 106 1 0 264 2 0 3 1 0 5 0 1 854 0 1 100 0 5 39 1 2 617 0 1 428 8 0 82 0 1 335 chain 473025 chr3 198295559 + 137412477 137417944 L1PA4 6152 + 6 5351 3787 454 6 0 120 1 0 147 8 4 709 1 0 1790 116 7 135 1 0 1979 chain 8715 chr3 198295559 + 137415721 137415818 L1PA4 6152 + 2544 2642 73179 91 0 1 6 chain 26097 chr3 198295559 + 137423688 137424043 THE1A 353 + 0 353 47580 111 1 0 91 1 0 5 3 0 5 3 6 10 0 1 5 2 1 118 chain 517650 chr3 198295559 + 137430509 137436687 L1PA6 6164 + 1 6160 2385 381 0 3 75 7 6 52 0 2 47 1 0 24 3 1 472 3 0 159 0 1 1012 2 0 98 23 7 176 2 1 64 0 4 63 1 20 128 1 0 285 0 1 113 0 1 2108 18 0 502 0 1 345 6 0 7 chain 34929 chr3 198295559 + 137437659 137438046 L1PA3long 6157 + 5767 6154 38070 387 chain 25418 chr3 198295559 + 137483417 137483785 THE1D 372 + 0 372 48605 166 42 45 61 0 1 99 chain 92752 chr3 198295559 + 137498326 137499402 MER11C 1089 + 0 1079 19226 176 0 2 59 0 1 58 0 1 71 1 0 711 chain 9727 chr3 198295559 + 137528769 137528895 MER2 342 + 85 215 70985 24 0 2 35 1 0 56 0 3 10 chain 501760 chr3 198295559 + 137543621 137549780 L1PA6 6164 + 17 6159 3066 60 0 11 72 8 0 8 10 18 18 0 1 36 5 4 26 6 7 191 1 0 11 11 12 197 109 0 967 0 10 598 0 2 67 0 1 123 2 4 5 2 0 58 16 71 287 0 1 304 1 0 1031 0 1 150 1 5 107 0 1 455 0 1 293 1 0 80 0 5 510 0 1 85 1 0 156 0 1 90 chain 20756 chr3 198295559 + 137554324 137554615 L1PA15-16 3068 + 1134 1402 55426 158 22 0 103 1 0 7 chain 105672 chr3 198295559 + 137557358 137558655 L1P1 4361 + 565 1843 17601 79 7 8 104 6 11 173 0 4 142 0 1 55 6 0 41 25 1 659 chain 141691 chr3 198295559 + 137560131 137561737 L1PA5 6144 + 4525 6129 12961 776 0 1 699 10 7 121 chain 5289 chr3 198295559 + 137562673 137562772 L1MC4a 1092 + 562 660 84250 32 22 21 45 chain 10256 chr3 198295559 + 137565794 137565940 MSTA 426 + 280 426 69885 31 3 0 6 1 4 105 chain 35269 chr3 198295559 + 137595600 137596041 LTR7 482 + 0 475 37849 224 0 1 38 1 32 10 0 1 59 1 2 108 chain 318204 chr3 198295559 + 137596050 137599728 HERVH-int 3825 + 0 3825 6437 333 1 0 48 1 0 96 0 114 12 7 1 14 1 38 41 1 0 58 0 1 11 0 2 9 0 1 164 1 0 1378 0 1 941 0 1 561 chain 36514 chr3 198295559 + 137600741 137601184 LTR7 482 + 0 476 37071 224 0 1 39 0 31 10 0 1 170 chain 24065 chr3 198295559 + 137622469 137622786 L1PA8 5853 + 5542 5853 50704 22 1 0 44 2 0 74 1 0 11 1 0 6 0 1 40 2 1 19 1 0 93 chain 508470 chr3 198295559 + 137653910 137660442 L1PA7 6471 + 1 6470 2821 229 13 23 9 1 0 141 7 0 55 1 0 5 1 2 117 5 0 161 1 0 11 1 18 9 2 1 134 0 1 449 0 1 266 0 2 134 9 5 569 0 1 33 0 2 35 4 0 106 0 2 118 0 1 118 0 5 336 0 4 445 4 8 55 9 10 214 5 4 130 0 3 31 7 6 195 0 1 121 97 0 194 1 3 150 0 4 308 0 1 4 1 0 270 0 1 4 1 0 422 0 1 9 0 2 216 8 0 93 4 7 454 chain 2961 chr3 198295559 + 137658213 137658249 L1PA7 6471 + 4333 4368 100273 31 1 0 4 chain 517696 chr3 198295559 + 137660583 137666451 L1PA4 6152 + 2 5879 2382 944 0 3 352 0 1 3288 1 7 704 1 0 578 chain 50349 chr3 198295559 + 137678342 137679036 L1MA3 4352 + 1780 2470 29432 6 4 0 339 0 4 115 0 4 60 7 6 39 7 0 117 chain 37099 chr3 198295559 + 137679885 137680355 L1PA7 6471 + 5968 6435 36679 291 0 2 19 12 7 148 chain 7100 chr3 198295559 + 137682050 137682188 L1MA3 4352 + 4228 4352 77264 32 2 0 10 14 5 7 1 0 6 1 0 29 1 0 35 chain 22848 chr3 198295559 + 137712919 137713231 L1PA8 5853 + 5541 5851 52584 23 1 0 18 0 4 23 2 0 73 7 8 5 2 0 48 1 0 17 1 0 91 chain 526570 chr3 198295559 + 137750706 137757065 L1PA6 6164 + 0 6149 1973 10 0 1 305 0 4 909 0 1 216 0 1 50 1 0 230 0 1 485 0 2 563 2 3 409 0 1 780 0 2 1775 1 0 78 218 0 95 6 1 52 3 4 171 chain 23191 chr3 198295559 + 137759943 137760206 L1PA5 6144 + 5873 6140 52092 34 0 4 229 chain 6743 chr3 198295559 + 137784471 137784595 MER53 195 + 3 195 78501 31 17 83 11 1 0 4 2 5 58 chain 6597 chr3 198295559 + 137819973 137820094 L1PB1 5432 + 5312 5424 78977 15 3 1 4 1 0 16 2 0 22 1 0 21 1 0 13 1 0 16 1 0 4 chain 10729 chr3 198295559 + 137837054 137837184 MLT1B 390 + 254 384 68992 130 chain 112686 chr3 198295559 + 137869396 137871457 L1M1 2793 + 524 2516 16725 9 1 0 9 2 1 13 89 63 16 80 24 43 101 79 16 48 47 49 18 15 95 1 0 49 0 2 125 2 1 18 11 10 42 4 0 18 7 0 7 1 0 104 0 12 118 3 0 9 0 11 10 1 0 184 0 4 66 0 1 98 1 0 4 1 8 80 5 8 47 1 0 16 0 1 11 3 8 28 3 2 17 0 1 82 18 21 36 5 4 10 0 1 5 11 17 92 0 8 41 1 0 76 chain 196414 chr3 198295559 + 137871654 137876022 L1MA1 4479 + 1258 4172 9832 117 17 14 288 2 1 47 1425 0 202 9 3 60 1 0 81 56 67 243 0 1 97 0 3 44 0 3 73 3 1 20 0 3 40 5 4 86 1 5 10 2 0 33 1 0 19 1 2 29 0 1 7 7 4 63 0 1 28 7 6 21 2 0 13 6 3 6 0 3 131 18 16 41 0 1 4 1 0 8 0 1 39 1 0 12 5 0 48 5 0 74 11 8 128 1 0 194 1 0 24 3 1 15 1 0 71 1 0 17 2 0 15 2 1 70 0 1 17 1 0 5 5 0 7 5 7 112 1 0 29 2 0 35 1 0 9 11 8 13 chain 93649 chr3 198295559 + 137872173 137873541 SVA_A 1864 + 19 1863 19088 20 6 1 54 0 11 72 2 0 400 0 76 32 3 0 33 3 0 37 3 0 10 107 536 16 40 0 28 0 16 152 0 3 333 4 1 13 chain 2443 chr3 198295559 + 137872971 137873011 SVA_A 1864 + 614 651 90838 30 9 6 1 chain 25159 chr3 198295559 + 137877079 137877426 THE1B 368 + 0 368 49020 40 0 15 119 1 0 6 0 1 4 1 0 7 2 0 114 5 13 37 0 1 11 chain 97798 chr3 198295559 + 137877426 137878651 THE1B-int 1605 + 0 1250 18548 41 4 5 384 0 25 54 1 0 741 chain 141947 chr3 198295559 + 137885630 137887314 L1PA7 6471 + 3147 4838 12942 279 1 2 1151 0 3 39 1 0 47 0 4 166 chain 490032 chr3 198295559 + 137896615 137902264 L1PA5 6144 + 0 5671 3422 1035 1 3 1046 0 1 1111 6 5 299 0 1 103 1 0 1423 1 0 103 0 1 166 0 4 19 0 13 330 0 3 5 chain 27505 chr3 198295559 + 137902264 137902555 AluYd8 298 + 0 291 45574 291 chain 63619 chr3 198295559 + 137903041 137904043 L1PREC2 3366 + 2030 2995 25498 293 0 1 308 1 3 112 7 5 45 11 10 39 54 42 13 10 5 15 3 1 14 53 35 24 chain 26792 chr3 198295559 + 137904653 137904941 L1HS 6032 + 5744 6032 46553 288 chain 476434 chr3 198295559 + 137907048 137913393 L1PA8A 6298 + 28 6291 3708 6 6 0 6 1 0 18 2 1 5 3 0 7 2 0 7 8 3 21 4 1 16 21 13 16 1 0 9 2 1 12 1 0 7 1 0 12 3 1 14 2 0 5 1 0 12 58 49 44 1 0 15 2 0 5 68 0 74 2 0 21 8 6 13 0 1 67 1 0 36 0 1 99 1 2 29 1 0 116 22 26 25 0 18 52 0 1 75 0 1 131 3 0 13 1 0 581 0 1 317 0 1 60 0 5 45 0 12 194 0 1 151 0 1 60 2 1 54 11 1 121 0 10 672 10 0 276 15 15 93 0 4 61 0 1 12 3 2 7 0 4 418 2 3 483 13 11 335 13 16 299 0 4 16 2 1 83 1 0 69 0 1 364 4 0 284 chain 22735 chr3 198295559 + 137955438 137955708 L1PA10 4194 + 1604 1874 52777 270 chain 98662 chr3 198295559 + 137968921 137970008 L1PA3long 6157 + 3792 4878 18453 933 1 0 153 chain 536438 chr3 198295559 + 137979865 137985949 L1PA5 6144 + 0 6137 1539 121 0 14 346 0 1 1626 0 1 465 0 2 1139 0 1 215 0 2 108 0 1 612 0 20 61 0 3 1199 0 8 192 chain 13620 chr3 198295559 + 138007165 138007326 L1PA8A 6298 + 5798 5959 64139 161 chain 27866 chr3 198295559 + 138007326 138007654 L1PA8A 6298 + 5963 6290 45088 220 3 2 105 chain 122942 chr3 198295559 + 138074652 138076896 L1PB1 5432 + 1316 5422 15034 78 2 3 12 2 1 166 3 0 43 2 1 625 1 0 6 1 2 8 0 1 103 464 2356 177 0 2 201 15 13 24 1 0 4 22 17 9 2 0 25 0 4 23 2 1 16 1 0 44 1 0 13 25 13 19 3 1 5 1 0 12 5 3 23 1 0 22 1 0 12 1 0 18 chain 108263 chr3 198295559 + 138085076 138086265 L1PA3long 6157 + 4966 6155 17282 1189 chain 11870 chr3 198295559 + 138099255 138099422 MER30 238 + 51 237 67071 31 0 7 18 5 20 63 3 0 47 chain 7195 chr3 198295559 + 138108869 138108956 MER5A 189 + 0 99 76958 72 0 12 15 chain 44204 chr3 198295559 + 138109508 138110082 L1PA8 5853 + 5243 5853 32009 321 2 1 43 2 0 75 21 58 19 1 0 28 0 3 62 chain 24620 chr3 198295559 + 138110164 138110459 L1PA6 6164 + 5868 6162 49838 234 1 0 60 chain 22623 chr3 198295559 + 138143439 138143719 AluSp 311 + 8 287 52953 117 1 0 162 chain 24384 chr3 198295559 + 138195003 138195305 AluYb8 318 + 11 309 50190 52 2 0 60 1 0 9 1 0 177 chain 24459 chr3 198295559 + 138333322 138333616 AluY 311 + 0 288 50094 28 4 0 105 2 0 155 chain 17722 chr3 198295559 + 138423380 138423688 LTR23 429 + 0 290 58986 18 0 9 7 9 0 57 27 0 7 10 23 44 1 0 27 1 0 15 3 0 70 1 2 11 chain 16821 chr3 198295559 + 138456584 138456820 MER1B 344 + 100 339 60008 65 1 2 95 6 9 11 1 0 57 chain 135941 chr3 198295559 + 138484473 138486090 LTR12C 1709 + 0 1709 13441 202 9 16 490 0 1 27 0 78 23 1 0 70 5 7 198 1 0 5 3 1 106 0 4 450 0 4 27 chain 526510 chr3 198295559 + 138517697 138525418 L1PA4 6152 + 1 6152 1979 3069 1539 0 113 1 0 1220 0 1 784 232 194 740 0 6 15 0 1 8 chain 111551 chr3 198295559 + 138520779 138522300 SVA_B 1603 + 8 1603 16872 14 47 2 15 7 36 356 116 0 240 0 3 57 6 6 14 2 39 33 0 167 12 1 0 308 0 2 285 2 0 6 chain 2575 chr3 198295559 + 138521237 138521334 SVA_B 1603 + 799 1024 87705 14 49 177 34 chain 7814 chr3 198295559 + 138544302 138544503 L1MA4 2864 + 2137 2341 75330 25 78 74 73 0 10 15 3 0 7 chain 87549 chr3 198295559 + 138545178 138546269 MER11A 1151 + 0 1147 20128 79 0 8 141 1 0 66 0 11 377 6 9 171 0 32 100 10 13 69 0 1 8 8 7 55 chain 266931 chr3 198295559 + 138550666 138556244 L1PB1 5432 + 594 5281 7785 7 1 0 35 1 5 115 0 1 89 0 1 134 2 5 130 5 6 92 0 4 10 0 2 71 0 1 102 314 5 135 0 4 92 0 3 67 2 0 784 6 1 91 0 1 4 5 7 134 12 14 60 334 36 49 0 3 365 972 974 77 299 0 23 9 0 15 0 1 93 0 4 71 1 10 100 2 0 167 8 0 10 3 11 178 40 35 75 13 11 24 2 1 8 1 0 10 16 10 46 6 8 15 1 0 45 chain 519241 chr3 198295559 + 138560063 138566828 L1PA7 6471 + 0 6469 2301 45 1 0 363 9 0 239 8 11 276 20 0 462 2 5 243 313 0 274 6 3 20 6 5 115 3 2 100 5 10 301 1 2 43 0 2 120 2 0 63 0 4 36 0 3 59 2 1 201 0 3 365 0 1 107 1 2 5 1 0 6 1 0 363 1 2 473 0 1 340 1 3 276 1 0 61 0 7 51 0 1 253 0 14 107 0 1 171 2 0 307 3 0 84 0 4 120 0 1 20 0 14 286 9 0 12 chain 250214 chr3 198295559 + 138573974 138576921 L1P2 5180 + 2 2962 8230 137 11 10 98 4 3 257 1 0 8 1 0 268 0 15 649 0 2 1513 chain 36317 chr3 198295559 + 138576931 138577343 L1PA5 6144 + 5720 6135 37203 383 0 3 29 chain 7154 chr3 198295559 + 138581331 138581421 L1M1 2793 + 1291 1382 77084 13 1 0 46 0 2 30 chain 3750 chr3 198295559 + 138584903 138584980 L1MA2 4263 + 1506 1583 93236 27 25 25 25 chain 24637 chr3 198295559 + 138601717 138602070 THE1A 353 + 0 353 49818 35 9 10 60 16 15 107 1 2 5 1 0 119 chain 113623 chr3 198295559 + 138602070 138604242 THE1A-int 1579 + 0 1579 16603 100 0 23 983 4 9 15 0 1 11 16 17 118 749 123 39 0 1 28 1 3 108 chain 11801 chr3 198295559 + 138603626 138603768 THE1A-int 1579 - 167 306 67208 34 3 0 105 chain 31765 chr3 198295559 + 138662913 138663260 L1PA3long 6157 + 5000 5347 40526 347 chain 26354 chr3 198295559 + 138711296 138711605 AluSp 311 + 0 308 47192 44 1 0 264 chain 7197 chr3 198295559 + 138740396 138740475 MLT1A0 366 + 287 366 76952 79 chain 113200 chr3 198295559 + 138784397 138785837 SVA_B 1603 + 6 1603 16651 15 37 20 427 0 2 34 0 193 229 4 0 37 4 0 13 1 0 14 46 0 19 1 0 24 5 42 99 0 2 279 6 2 146 chain 7329 chr3 198295559 + 138792247 138792347 MER2 342 + 88 189 76570 27 1 0 27 0 2 45 chain 35031 chr3 198295559 + 138846986 138847437 MER41A 554 + 1 439 37998 86 5 6 14 4 0 199 10 0 133 chain 39907 chr3 198295559 + 138873648 138874232 LTR10E 629 + 0 599 34733 78 3 1 79 19 16 97 0 26 27 1 0 8 0 1 5 1 0 38 1 0 157 1 0 11 29 26 29 chain 5672 chr3 198295559 + 138908944 138909045 MER20 218 + 41 142 82459 40 19 20 33 1 0 8 chain 9273 chr3 198295559 + 139008710 139008837 L1MA2 4263 + 3973 4093 71968 85 7 0 35 chain 22666 chr3 198295559 + 139041634 139041906 L1PA7 6471 + 6195 6467 52870 272 chain 21724 chr3 198295559 + 139068356 139068600 L1P1 4361 + 3532 3776 54200 244 chain 3796 chr3 198295559 + 139149971 139150019 L1MD2 1676 + 1210 1258 92873 48 chain 4706 chr3 198295559 + 139175015 139175076 MER20 218 + 31 91 87214 36 1 0 24 chain 48162 chr3 198295559 + 139212776 139213355 LTR66 600 + 0 578 30232 411 3 1 44 0 1 121 chain 23586 chr3 198295559 + 139270656 139271024 THE1D 372 + 0 372 51455 160 0 1 8 24 25 27 13 7 10 6 12 70 0 3 17 1 0 32 chain 347526 chr3 198295559 + 139332939 139336780 L1PA2 6032 + 2192 6032 5942 9 7 0 371 0 5 172 1 0 790 0 1 278 0 1 2213 chain 6480 chr3 198295559 + 139388276 139388364 U6 107 + 0 107 79406 22 1 20 65 chain 525481 chr3 198295559 + 139404564 139410725 L1PA6 6164 + 0 6149 2023 28 6 5 192 1 2 9 0 2 280 0 2 47 1 0 1037 19 1 728 3 5 168 0 1 33 3 0 624 0 2 5 8 6 8 2 0 712 1 0 56 1 2 1229 0 1 133 0 4 827 chain 455605 chr3 198295559 + 139590956 139596035 L1HS 6032 + 1 5092 4244 2295 0 5 63 0 4 1435 0 1 360 0 1 347 0 1 579 chain 3035 chr3 198295559 + 139633479 139633550 MLT1D 503 + 435 494 99456 23 25 13 23 chain 13962 chr3 198295559 + 139679666 139679975 L1PB1 5432 + 5134 5417 63640 12 1 0 12 6 3 8 2 0 51 2 1 10 2 5 45 1 0 15 4 0 7 18 9 15 2 0 4 1 0 15 2 0 22 12 11 12 1 0 13 1 0 13 chain 28489 chr3 198295559 + 139738288 139738741 MLT2A1 477 + 0 468 44144 96 0 1 43 0 1 28 0 4 92 5 9 21 1 7 22 1 0 56 55 55 33 chain 14017 chr3 198295559 + 139769170 139769378 L1PA8 5853 + 5647 5853 63567 32 18 16 45 2 1 19 1 0 68 0 2 23 chain 222264 chr3 198295559 + 139799781 139802230 L1PA3long 6157 + 3126 5575 8974 2449 chain 335046 chr3 198295559 + 139818729 139822575 L1PA5 6144 + 2286 6142 6143 28 0 1 1026 11 17 1422 1 8 1347 4 0 7 chain 36192 chr3 198295559 + 139862324 139862826 MER11B 1079 + 0 457 37276 242 47 2 213 chain 2538 chr3 198295559 + 139862585 139862612 MER11B 1079 + 215 242 103459 27 chain 3554 chr3 198295559 + 140016455 140016514 Tigger2b_Pri 1066 + 54 112 94821 20 7 6 32 chain 5216 chr3 198295559 + 140156877 140156943 LTR16B2 458 + 392 458 84603 66 chain 13732 chr3 198295559 + 140157798 140157970 L1PA16 3655 + 1379 1551 63972 172 chain 41226 chr3 198295559 + 140221517 140222183 L1MA2 4263 + 3449 4114 33825 26 1 3 20 1 0 24 1 0 53 14 10 77 1 0 87 7 23 30 3 0 150 22 20 82 14 7 12 1 2 29 1 0 10 chain 12486 chr3 198295559 + 140273187 140273376 L1PA8 5853 + 5667 5853 66009 14 2 1 11 1 0 47 2 1 19 1 0 75 2 3 15 chain 27104 chr3 198295559 + 140306914 140307268 THE1B 368 + 0 368 46121 44 0 15 110 5 4 27 2 0 123 0 2 43 chain 41788 chr3 198295559 + 140325500 140326017 LTR10C 591 + 0 591 33497 13 1 0 93 0 72 75 5 4 69 0 2 182 0 2 79 chain 23927 chr3 198295559 + 140367240 140367534 AluSc 308 + 8 302 50900 294 chain 37450 chr3 198295559 + 140423581 140424090 LTR10D 510 + 0 510 36441 71 8 7 12 2 4 52 0 1 82 2 0 5 6 9 176 2 0 91 chain 5950 chr3 198295559 + 140474073 140474140 MLT1D 503 + 435 502 81277 67 chain 6380 chr3 198295559 + 140572629 140572762 MER5A 189 + 40 189 79742 73 40 56 20 chain 87323 chr3 198295559 + 140618153 140619539 L1PB1 5432 + 4065 5422 20169 39 0 1 99 0 2 245 0 6 6 14 8 60 0 1 62 11 15 19 3 0 67 1 6 54 5 8 49 0 1 3 6 0 26 1 0 36 5 0 216 22 20 24 1 0 5 23 18 7 2 0 52 2 1 10 6 5 17 0 1 27 1 0 8 30 19 16 13 10 11 2 0 25 1 0 22 1 0 12 1 0 18 chain 324838 chr3 198295559 + 140622731 140626472 L1P1 4361 + 570 4341 6314 154 2 3 409 0 2 285 0 2 111 0 2 956 0 10 457 0 6 7 1 2 715 0 9 450 1 0 155 1 0 23 2 1 12 chain 10274 chr3 198295559 + 140633207 140633548 MLT1C 463 + 32 401 69859 58 46 42 57 5 3 16 131 165 28 chain 85028 chr3 198295559 + 140642170 140643111 L1PA3long 6157 + 5216 6157 20614 125 3 0 151 0 3 662 chain 118412 chr3 198295559 + 140651241 140652792 LTR12C 1709 + 0 1709 15818 122 0 1 5 1 0 172 1 2 36 0 43 83 21 10 245 0 118 234 0 47 89 24 0 17 11 4 12 8 0 387 1 0 82 chain 16146 chr3 198295559 + 140655226 140655465 L1M1 2793 + 1751 1999 60817 38 3 1 82 16 27 100 chain 326620 chr3 198295559 + 140656918 140661542 L1PA11 4918 + 16 4580 6271 23 5 3 36 4 1 36 1 0 15 5 3 26 6 0 7 0 6 5 7 6 30 2 0 5 2 1 36 0 3 123 16 7 35 1 0 51 0 2 112 0 1 94 0 1 60 3 0 173 1 0 112 1 2 97 19 20 210 1 0 4 0 1 43 4 3 63 0 4 81 5 0 70 9 13 63 0 1 43 1 2 64 4 1 47 0 1 9 2 7 299 5 0 25 26 18 21 1 0 393 11 9 322 0 1 26 0 3 241 4 0 69 1 2 76 0 4 33 7 8 50 11 12 29 0 2 145 2 0 417 21 0 230 0 4 11 6 0 67 1 0 7 2 0 65 0 1 4 6 4 12 1 0 4 0 3 11 63 49 12 2 0 13 chain 380360 chr3 198295559 + 140664219 140669900 L1PB1 5432 + 78 5420 5477 278 0 1 92 2 1 92 4 3 45 18 18 15 22 23 165 38 26 182 5 6 7 1 0 29 1 15 49 27 30 92 0 4 119 12 15 11 12 41 72 302 0 198 0 3 545 1 0 6 4 0 89 10 4 397 1 6 172 0 4 75 1 0 271 0 2 18 2 1 186 15 19 56 0 1 36 3 0 113 11 10 359 0 1 124 0 2 77 0 3 236 0 1 85 0 4 16 3 6 73 2 0 90 0 8 79 3 1 51 6 10 41 25 1 114 61 15 29 17 12 10 3 1 50 2 1 15 1 0 28 1 0 16 1 0 16 14 1 24 30 25 24 1 0 21 1 0 13 1 0 16 chain 28234 chr3 198295559 + 140671560 140671883 AluYa5 310 + 0 310 44512 126 12 0 174 1 0 10 chain 138713 chr3 198295559 + 140671883 140673608 L1PA8 5853 + 4104 5853 13210 138 0 4 88 1 0 35 0 3 420 1 2 213 0 2 299 0 2 73 0 1 180 1 0 41 8 6 28 0 17 23 1 0 8 2 0 5 7 9 59 1 0 93 chain 8389 chr3 198295559 + 140685428 140685539 MER5A1 166 + 7 117 73926 106 1 0 4 chain 25958 chr3 198295559 + 140781112 140781511 MSTA 426 + 0 405 47782 28 0 1 124 4 0 60 36 37 50 10 18 87 chain 2020 chr3 198295559 + 140786769 140786799 L1PB1 5432 + 5117 5147 106186 14 0 1 6 1 0 9 chain 8221 chr3 198295559 + 140786815 140786942 L1PB1 5432 + 5158 5281 74348 11 2 0 51 3 2 15 2 1 43 chain 5538 chr3 198295559 + 140787009 140787103 L1PB1 5432 + 5332 5424 83091 14 2 0 24 1 0 22 0 3 9 1 0 16 1 0 4 chain 59294 chr3 198295559 + 140861089 140861933 L1PA13 3608 + 2652 3485 26571 330 0 1 18 0 1 130 1 0 28 1 0 107 12 10 59 1 0 55 8 5 40 18 14 15 1 0 20 chain 4405 chr3 198295559 + 140863317 140863370 MSTB 430 + 377 430 88870 53 chain 67409 chr3 198295559 + 140872014 140872882 LTR12 884 + 0 884 24596 138 36 24 19 0 25 172 3 1 127 0 5 373 chain 61203 chr3 198295559 + 140878369 140879126 LTR12 884 + 0 884 26062 74 0 132 172 3 1 365 4 1 139 chain 146609 chr3 198295559 + 140881187 140882944 L1PA7 6471 + 4690 6466 12568 32 1 0 96 0 1 6 2 0 121 0 3 100 0 13 9 0 1 946 1 0 206 0 3 70 0 1 44 0 1 123 chain 117373 chr3 198295559 + 140885310 140886753 THE1B-int 1605 + 6 1595 15988 351 0 145 694 7 8 391 chain 25338 chr3 198295559 + 140886763 140887107 THE1B 368 + 0 368 48733 40 0 15 117 1 0 26 1 0 4 30 41 125 chain 57358 chr3 198295559 + 140900765 140901505 LTR17 781 + 0 757 27144 59 1 0 101 1 0 74 1 0 15 7 6 72 1 0 369 1 23 38 chain 13333 chr3 198295559 + 140905515 140905691 MER30 238 + 44 238 64576 62 4 22 110 chain 519050 chr3 198295559 + 140933090 140939835 L1PA7 6471 + 3 6470 2314 307 0 1 100 0 1 238 4 0 273 0 21 324 9 11 6 3 0 108 0 3 11 0 16 237 5 1 1228 0 4 157 0 10 30 0 3 5 1 2 316 2 1 105 0 3 205 0 1 11 1 0 209 8 0 1279 2 17 140 0 1 118 0 2 80 383 40 227 9 3 64 0 6 210 0 1 152 6 7 172 chain 533424 chr3 198295559 + 140987580 140993670 L1PA5 6144 + 0 6134 1684 178 0 1 202 0 1 74 0 1 266 1 2 141 0 2 1554 0 9 136 7 9 523 3 33 38 1 0 1190 0 2 932 1 0 703 3 0 137 chain 55591 chr3 198295559 + 141017308 141018047 LTR12 884 + 0 869 27689 79 0 132 129 1 2 25 1 23 9 24 0 16 10 9 445 chain 14779 chr3 198295559 + 141028873 141029081 L1PA8 5853 + 5650 5853 62557 28 6 5 5 1 0 51 3 2 19 1 0 20 1 0 73 chain 5098 chr3 198295559 + 141112180 141112266 MIR 256 + 117 220 85170 16 11 28 59 chain 69862 chr3 198295559 + 141160534 141161552 L1PA14 3548 + 2393 3398 24026 37 0 2 103 5 4 48 1 0 101 1 0 97 0 12 141 26 22 40 9 5 109 9 5 12 8 5 85 1 0 109 16 11 38 4 2 12 1 0 5 chain 3498 chr3 198295559 + 141167833 141167883 MADE1 96 + 25 96 95259 14 1 0 4 0 22 31 chain 6908 chr3 198295559 + 141173304 141173384 MER41B 635 + 555 635 77928 80 chain 233117 chr3 198295559 + 141195859 141199231 L1PA13 3608 + 147 3497 8661 17 2 1 12 100 85 27 2 0 32 0 3 92 2 0 12 1 0 17 2 0 16 6 2 19 1 0 18 3 1 15 20 17 50 0 1 47 2 0 15 1 2 52 1 6 100 0 4 80 3 4 9 2 1 197 1 2 198 0 4 460 1 5 30 12 0 60 0 10 78 2 0 76 4 5 4 1 0 115 0 1 218 0 2 15 4 2 151 6 8 94 1 0 250 10 9 93 4 5 164 1 0 113 2 0 63 2 1 53 1 0 6 2 0 47 2 0 5 2 0 40 0 3 6 chain 28588 chr3 198295559 + 141204900 141205298 LTR7 482 + 0 474 43976 69 8 46 85 0 3 21 0 1 8 0 31 41 0 1 113 12 14 41 chain 305332 chr3 198295559 + 141205308 141209199 HERVH-int 3825 + 0 3824 6713 275 16 15 43 2 1 201 1 0 6 1 0 4 5 6 19 1 0 10 1 0 24 87 0 13 2 1 13 24 21 4 1 0 41 1 0 82 1 0 44 0 9 593 0 1 287 0 2 733 1 0 224 28 29 384 0 19 304 31 32 384 chain 5171 chr3 198295559 + 141205917 141205972 HERVH-int 3825 + 488 543 83448 55 chain 2032 chr3 198295559 + 141205972 141206004 HERVH-int 3825 + 652 683 92336 4 1 0 27 chain 24358 chr3 198295559 + 141233188 141233485 AluSp 311 + 3 304 50239 97 0 2 172 4 6 24 chain 22797 chr3 198295559 + 141313291 141313629 MER66B 489 + 91 441 52667 212 0 7 30 7 17 38 20 15 31 chain 3194 chr3 198295559 + 141317058 141317097 Tigger4a 237 - 190 230 97949 4 0 1 35 chain 3544 chr3 198295559 + 141364232 141364365 L1MB7 1623 + 877 1014 94909 38 54 59 16 13 12 12 chain 110085 chr3 198295559 + 141496089 141497332 L1PA5 6144 + 4904 6144 17070 393 0 4 691 7 0 152 chain 2525 chr3 198295559 + 141515923 141515951 L1PA5 6144 + 5857 5885 103525 28 chain 22761 chr3 198295559 + 141515952 141516204 L1PA5 6144 + 5885 6137 52734 252 chain 48345 chr3 198295559 + 141628327 141628965 LTR12 884 + 0 869 30167 25 1 0 57 0 132 130 24 0 24 0 22 175 0 102 202 chain 536423 chr3 198295559 + 141669915 141676330 L1PA5 6144 + 0 6143 1540 1169 9 0 105 0 3 138 0 5 288 0 1 125 277 2 473 7 0 222 0 2 301 5 6 835 1 0 366 0 1 116 0 1 469 2 0 1140 1 0 42 1 2 247 0 13 59 5 0 12 chain 183881 chr3 198295559 + 141702980 141705605 L1PB1 5432 + 2944 5277 10392 786 2 3 149 0 2 50 0 10 109 304 0 42 4 5 8 0 1 276 0 1 54 0 1 185 3 0 42 0 1 134 1 9 291 1 0 11 1 0 24 1 0 8 1 0 12 4 0 9 2 0 53 2 1 10 6 5 13 0 1 27 chain 3153 chr3 198295559 + 141786334 141786400 MLT1E1A 663 + 12 84 98345 18 17 24 5 1 0 25 chain 25961 chr3 198295559 + 141821204 141821513 LTR17 781 + 0 326 47775 156 1 0 55 0 16 76 0 2 21 chain 8031 chr3 198295559 + 141833351 141833477 MER65D 500 + 0 133 74802 68 18 25 40 chain 25167 chr3 198295559 + 141884453 141884776 MLT2A1 477 + 0 324 49013 14 4 1 123 0 1 30 1 5 42 1 0 108 chain 6340 chr3 198295559 + 141905358 141905450 MER20 218 + 111 204 79864 37 8 9 47 chain 6518 chr3 198295559 + 141980218 141980337 Tigger3b 1229 + 543 654 79280 28 0 2 6 24 10 34 0 4 27 chain 90628 chr3 198295559 + 142010630 142011601 L1PA2 6032 + 5059 6030 19568 971 chain 7277 chr3 198295559 + 142130645 142130765 L1MB3 1562 + 1433 1552 76742 5 2 0 26 1 3 52 5 4 29 chain 93546 chr3 198295559 + 142141918 142143533 L1MA1 4479 + 2866 4139 19105 92 2 0 27 2 0 173 29 17 76 1 0 12 5 0 126 4 0 56 5 3 71 2 0 98 0 1 68 1 2 26 1 0 25 2 0 16 1 0 70 338 34 88 1 0 5 3 0 77 0 1 47 1 0 31 2 0 31 chain 5051 chr3 198295559 + 142156498 142156567 LTR40b 463 + 394 462 85405 30 1 0 38 chain 18396 chr3 198295559 + 142206736 142206944 HERVK11D-int 613 + 405 613 58249 208 chain 80497 chr3 198295559 + 142206944 142207843 MER11D 897 + 0 897 21532 287 3 1 609 chain 118796 chr3 198295559 + 142253559 142255496 L1PBa 3878 + 2195 3730 15746 363 4 8 136 0 6 20 0 1 263 0 2 40 4 1 13 0 2 65 7 17 54 420 0 38 3 0 491 2 1 14 chain 11122 chr3 198295559 + 142258220 142258363 MER41B 635 + 487 635 68373 63 1 6 79 chain 123811 chr3 198295559 + 142285877 142287990 HUERS-P3b-int 2065 + 13 2030 14879 35 0 10 36 3 0 59 21 23 14 0 3 106 94 15 53 18 18 53 0 3 49 0 3 38 0 1 13 7 0 36 13 10 11 0 4 30 0 3 114 0 1 20 9 8 19 0 1 5 1 0 11 7 11 25 2 1 85 12 0 172 5 2 104 2 3 94 0 13 142 1 0 45 25 2 17 0 1 7 30 31 27 0 2 17 4 2 18 1 0 89 3 1 73 2 0 13 21 18 47 31 27 21 16 15 87 chain 541255 chr3 198295559 + 142290209 142296229 L1PA3long 6157 + 4 6157 1259 145 6 7 424 0 4 192 0 128 2273 1 0 253 0 1 2573 7 0 8 0 7 138 chain 296228 chr3 198295559 + 142300584 142306369 L1PB1 5432 + 1365 5420 6942 41 11 0 139 0 4 364 1 0 187 0 1 392 11 0 7 1 5 72 0 5 75 0 11 151 0 1 4 0 2 16 11 14 126 0 1 4 0 5 61 0 12 26 10 9 111 1 0 52 0 1 118 320 0 22 0 14 272 0 23 8 0 2 242 6 56 164 1068 2 200 0 1 119 0 2 119 3 0 164 21 14 209 0 2 44 476 54 23 1 0 9 1 0 9 2 0 3 2 0 10 3 1 49 1 0 17 1 0 41 33 20 30 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 16531 chr3 198295559 + 142339838 142340069 L1M1 2793 + 1013 1246 60329 53 0 1 113 2 1 46 6 8 11 chain 4697 chr3 198295559 + 142354011 142354066 U6 107 + 1 56 87285 55 chain 10576 chr3 198295559 + 142374777 142375216 MLT1C 463 + 3 461 69270 6 1 0 13 20 41 27 51 57 48 166 163 28 2 0 24 0 1 28 10 7 15 chain 2450 chr3 198295559 + 142413247 142413292 MamRep1894 122 + 2 45 103912 22 7 5 16 chain 43428 chr3 198295559 + 142437583 142438159 L1MA2 4263 + 3304 3872 32488 192 2 1 87 5 2 76 1 0 146 3 0 64 chain 8946 chr3 198295559 + 142438178 142438294 HERV17-int 4347 + 78 191 72513 34 2 0 27 1 0 52 chain 378032 chr3 198295559 + 142438294 142442695 HERV17-int 4347 + 13 4341 5516 14 1 0 48 1 0 37 2 0 27 1 0 158 3 0 37 0 1 342 0 1 31 0 2 611 0 4 142 3 0 235 31 12 894 0 1 272 0 1 257 0 1 58 0 1 398 74 14 339 1 6 384 chain 25325 chr3 198295559 + 142443328 142443654 LTR17 781 + 0 326 48748 110 9 18 32 0 1 148 10 0 17 chain 5488 chr3 198295559 + 142459587 142459766 MER8 282 + 0 235 83280 47 5 6 12 47 100 15 26 28 27 chain 24826 chr3 198295559 + 142502046 142502396 L1PA16 3655 + 3059 3420 49548 32 9 14 95 14 22 68 2 0 130 chain 50672 chr3 198295559 + 142551484 142552286 L1PA11 4918 + 3831 4629 29318 260 0 2 57 0 1 180 2 11 52 6 1 37 0 18 25 5 4 9 1 0 20 44 34 12 1 0 13 2 0 11 47 33 18 chain 6182 chr3 198295559 + 142661865 142661932 MER41A 554 + 399 466 80416 67 chain 52964 chr3 198295559 + 142661935 142662576 L1PA7 6471 + 5831 6468 28588 324 0 1 64 12 8 87 1 2 109 2 0 42 chain 20022 chr3 198295559 + 142673601 142673842 7SK 245 + 3 245 56363 156 1 2 84 chain 12740 chr3 198295559 + 142698994 142699173 L1PA8 5853 + 5586 5760 65540 22 2 0 67 8 7 6 1 0 52 2 1 19 chain 25472 chr3 198295559 + 142700740 142701091 THE1A 353 + 0 353 48518 47 0 1 6 1 2 38 1 0 15 15 16 228 chain 34873 chr3 198295559 + 142717338 142717775 L1PBa1 4058 + 1145 1584 38108 311 1 0 76 0 3 49 chain 362925 chr3 198295559 + 142717976 142723155 L1PB1 5432 + 563 5103 5771 205 1 0 67 13 10 397 0 4 162 4 1 1049 0 4 29 6 1 28 308 4 296 1 0 32 0 4 13 15 8 18 0 16 105 17 0 190 0 2 517 17 1 30 4 1 5 0 3 450 1 0 414 0 1 26 308 0 99 29 25 24 1 0 79 0 1 219 chain 18951 chr3 198295559 + 142739897 142740171 MER1B 344 + 38 335 57595 182 4 0 33 25 52 30 chain 105162 chr3 198295559 + 142749642 142750867 L1PA7 6471 + 5029 6263 17666 202 1 2 369 8 15 614 0 1 31 chain 35430 chr3 198295559 + 142757315 142757810 L1PA8 5853 + 5350 5853 37763 24 0 3 17 0 2 110 11 17 41 1 0 46 2 0 51 0 4 17 8 6 52 2 1 19 2 1 92 chain 19143 chr3 198295559 + 142766160 142766394 MLT2A1 477 + 0 235 57406 168 5 2 9 0 1 24 0 3 28 chain 3904 chr3 198295559 + 142801207 142801251 U7 62 + 1 45 92092 44 chain 37245 chr3 198295559 + 142868389 142868924 LTR10F 562 + 0 560 36588 105 2 30 95 5 1 18 9 16 8 2 0 8 2 0 79 13 9 57 0 1 76 1 2 55 chain 51203 chr3 198295559 + 142868925 142869978 MER4D1 891 + 113 891 29167 74 312 0 50 0 28 98 0 1 50 1 0 18 0 3 37 10 14 72 1 2 70 1 0 38 2 0 135 24 28 60 chain 4657 chr3 198295559 + 142884886 142884978 MER3 215 + 66 180 87492 35 0 1 16 21 42 20 chain 7384 chr3 198295559 + 142919418 142919508 MER85 139 + 0 90 76439 90 chain 32987 chr3 198295559 + 142935600 142936066 MER1A 529 + 59 521 39524 18 26 22 61 0 1 96 0 1 199 11 9 55 chain 21891 chr3 198295559 + 142964846 142965140 AluSc 308 + 0 307 53977 37 3 21 19 2 1 53 6 5 81 3 0 90 chain 66644 chr3 198295559 + 142988650 142989393 L1PA4 6152 + 5402 6143 24787 613 1 0 113 1 0 15 chain 59742 chr3 198295559 + 143073722 143074388 SVA_C 1631 + 959 1627 26448 42 1 3 623 chain 53416 chr3 198295559 + 143142105 143142821 LTR17 781 + 0 755 28422 57 2 1 103 1 0 18 7 6 52 1 0 90 1 0 358 12 56 14 chain 19186 chr3 198295559 + 143165891 143166108 L1PA2 6032 + 5818 6032 57365 199 3 0 15 chain 21205 chr3 198295559 + 143192944 143193308 THE1B 368 + 0 368 54876 107 27 28 42 24 16 16 1 5 14 7 15 60 2 0 7 1 2 56 chain 14010 chr3 198295559 + 143195736 143196111 MSTA 426 + 18 417 63578 33 1 0 46 37 59 6 4 0 25 89 92 21 24 28 89 chain 12578 chr3 198295559 + 143197966 143198144 MER30 238 + 46 238 65831 63 4 21 69 3 0 39 chain 27097 chr3 198295559 + 143250421 143250776 THE1A 353 + 0 353 46130 102 9 8 191 1 0 52 chain 4470 chr3 198295559 + 143323169 143323226 L1MA4A 3247 + 3025 3082 88494 57 chain 475503 chr3 198295559 + 143390474 143395979 L1PA4 6152 + 10 5521 3737 663 9 8 1137 0 1 500 0 1 129 0 4 42 0 1 170 1 0 126 4 0 897 1 0 430 0 1 231 0 4 475 17 18 673 chain 4989 chr3 198295559 + 143617550 143617616 MER102b 334 + 95 160 85708 29 1 0 36 chain 546725 chr3 198295559 + 143620630 143626777 L1PA4 6152 + 0 6152 927 158 7 8 2034 0 2 1980 0 2 1949 0 2 12 2 0 5 chain 512962 chr3 198295559 + 143662333 143668488 L1PA5 6144 + 0 6143 2622 120 0 14 480 0 15 323 25 0 76 1 2 4 1 0 135 9 0 304 14 1 483 8 9 344 9 4 808 1 5 69 2 0 62 0 2 248 0 1 163 4 1 668 0 4 524 0 1 424 1 0 421 0 2 396 0 2 28 chain 27025 chr3 198295559 + 143714830 143715186 THE1B 368 + 0 368 46236 44 0 15 113 4 3 136 2 0 57 chain 65042 chr3 198295559 + 143725193 143725896 L1PA3long 6157 + 5454 6157 25182 703 chain 28108 chr3 198295559 + 143760242 143760554 L1PA5 6144 + 4028 4341 44701 262 0 1 50 chain 92128 chr3 198295559 + 143760554 143761582 L1PA5 6144 + 4345 5373 19319 1028 chain 68540 chr3 198295559 + 143761582 143762339 L1PA5 6144 + 5375 6132 24326 757 chain 27015 chr3 198295559 + 143797444 143797927 LTR7 482 + 0 470 46244 50 4 9 10 68 17 15 15 14 109 0 1 5 0 31 44 0 1 113 13 14 37 chain 274176 chr3 198295559 + 143797941 143801704 HERVH-int 3825 + 0 3825 7599 45 0 1 262 1 0 25 1 0 63 23 22 28 66 312 5 0 2 15 2 0 7 4 9 311 0 1 121 15 0 202 9 0 348 0 1 475 0 1 145 75 76 496 165 0 42 1 0 27 17 16 767 chain 26987 chr3 198295559 + 143805476 143805912 LTR7 482 + 0 469 46287 86 0 50 31 51 0 57 5 37 44 0 1 113 13 14 36 chain 3551 chr3 198295559 + 143811399 143811443 MIRb 242 + 74 118 94837 44 chain 179504 chr3 198295559 + 143932065 143934116 L1PA3long 6157 + 2880 5000 10608 119 0 1 271 0 2 1103 0 1 505 1 66 52 chain 103461 chr3 198295559 + 143982371 143983787 L1P2 5180 + 1764 3223 17887 278 0 1 164 6 10 53 8 30 27 15 2 53 2 0 5 1 7 52 19 23 108 0 4 144 0 16 31 10 18 15 8 1 417 chain 288155 chr3 198295559 + 144024125 144027461 L1PA5 6144 + 2782 6139 7194 227 11 0 1037 0 22 854 0 1 40 14 2 95 0 1 230 0 4 375 0 13 128 0 3 172 12 5 8 0 7 133 chain 14746 chr3 198295559 + 144037127 144037346 Tigger3a 397 + 38 316 62603 37 15 64 12 1 11 154 chain 35383 chr3 198295559 + 144081713 144082207 L1PA11 4918 + 3988 4474 37779 77 2 1 227 1 3 8 2 1 27 5 0 61 2 1 13 5 3 64 chain 17772 chr3 198295559 + 144125622 144125822 L1PA6 6164 + 5672 5872 58928 200 chain 62847 chr3 198295559 + 144181697 144182456 MER4E 760 + 0 760 25667 23 0 1 736 chain 4614 chr3 198295559 + 144417321 144417395 L1PB1 5432 + 5347 5418 87730 23 1 0 21 2 1 12 1 0 14 chain 22065 chr3 198295559 + 144417631 144417944 L1PA8A 6298 + 6002 6284 53742 169 35 3 70 0 1 39 chain 26021 chr3 198295559 + 144478813 144479208 L1PA8 5853 + 5480 5853 47689 82 1 0 45 3 1 17 0 4 50 1 0 61 2 1 17 4 3 12 1 0 3 14 0 67 5 0 10 chain 40717 chr3 198295559 + 144541294 144541997 L1PA15 4387 + 3693 4366 34137 114 15 13 10 3 0 57 2 0 46 1 0 47 3 0 28 15 17 78 2 1 27 1 0 53 2 1 23 4 0 8 2 1 48 23 18 30 4 2 14 5 0 27 1 0 10 chain 6311 chr3 198295559 + 144586583 144586657 LTR45 522 + 74 148 79959 74 chain 39684 chr3 198295559 + 144632190 144632680 THE1A-int 1579 + 1082 1571 34901 19 2 0 244 0 1 225 chain 23976 chr3 198295559 + 144632692 144633028 THE1A 353 + 4 353 50831 26 0 13 65 10 9 153 12 13 70 chain 3818 chr3 198295559 + 144644865 144644996 L1MB8 1703 + 1378 1496 92724 18 40 38 25 20 9 28 chain 131193 chr3 198295559 + 144749629 144751211 LTR12C 1709 + 0 1709 13903 122 1 0 4 0 1 318 1 2 12 1 0 10 0 4 177 0 119 68 1 0 275 1 0 4 4 2 106 0 4 101 1 2 7 0 3 368 chain 77589 chr3 198295559 + 144911680 144912663 L1PA7 6471 + 5454 6464 22183 167 0 3 74 0 2 45 0 1 71 3 0 186 0 2 5 7 5 142 0 14 39 0 1 6 1 0 91 1 2 111 1 10 33 chain 8072 chr3 198295559 + 144927924 144928029 L1PA16 3655 + 3484 3586 74692 94 3 0 8 chain 7129 chr3 198295559 + 144997914 144998006 L1PA10 4194 + 1043 1135 77167 92 chain 77269 chr3 198295559 + 145023553 145024398 L1PA3long 6157 + 5313 6157 22254 511 1 0 333 chain 176479 chr3 198295559 + 145064619 145066638 L1PA5 6144 + 4116 6143 10751 515 0 5 15 0 2 1058 0 1 431 chain 5694 chr3 198295559 + 145089456 145089527 LOR1a 498 + 142 213 82370 71 chain 18137 chr3 198295559 + 145113190 145113458 LTR7 482 + 165 470 58525 59 0 1 21 1 32 11 5 6 20 0 2 102 12 14 37 chain 278501 chr3 198295559 + 145113472 145116899 HERVH-int 3825 + 0 3705 7473 373 5 1 158 5 0 38 1 0 10 1 0 24 1 93 82 1 0 60 1 4 386 15 0 200 9 0 29 0 2 10 1 0 309 0 1 15 8 1 6 0 7 1261 9 11 5 0 3 29 39 249 231 0 2 105 chain 17795 chr3 198295559 + 145157592 145157816 L1PA7 6471 + 6237 6461 58899 68 0 8 10 8 0 138 chain 3616 chr3 198295559 + 145224846 145224885 5S 121 + 49 88 94303 39 chain 56379 chr3 198295559 + 145235248 145236017 MER4E1 777 + 0 769 27461 23 6 9 278 1 0 75 0 1 5 1 0 156 11 0 13 0 1 4 2 1 45 9 17 106 6 5 12 0 2 16 chain 106386 chr3 198295559 + 145333211 145334513 LTR12C 1709 + 0 1709 17510 262 0 1 22 1 16 274 0 1 198 0 367 43 2 0 34 1 0 6 0 4 16 11 5 32 9 8 53 0 29 338 chain 12268 chr3 198295559 + 145334562 145334731 MER50B 698 + 497 661 66338 39 1 0 73 4 0 52 chain 4155 chr3 198295559 + 145443156 145443208 L1M1 2793 + 2628 2679 90425 46 1 0 5 chain 19583 chr3 198295559 + 145469994 145470378 L1PB1 5432 + 4948 5311 56917 23 3 5 127 19 11 24 1 0 6 1 0 14 5 1 9 18 17 27 2 0 7 1 0 18 5 4 38 2 1 15 5 2 14 chain 123372 chr3 198295559 + 145479992 145481484 L1PA7 6471 + 4976 6469 14970 428 0 2 101 1 2 112 1 0 72 12 11 765 chain 6430 chr3 198295559 + 145514423 145514618 MER34C2 569 + 226 428 79569 17 2 1 13 12 13 43 73 80 35 chain 143395 chr3 198295559 + 145514660 145517950 HERVL-int 5654 + 834 4951 12825 17 1 2 17 0 5 166 8 9 72 2 0 642 0 7 396 1 0 109 21 21 79 1 2 75 0 55 107 1328 2088 170 0 1 4 6 5 68 chain 102186 chr3 198295559 + 145575828 145576994 L1PA5 6144 + 4968 6130 18042 41 1 0 288 0 4 671 7 0 9 0 5 6 5 0 138 chain 34781 chr3 198295559 + 145633151 145633701 MLT2A2 560 + 0 555 38173 115 64 65 101 11 12 71 0 1 106 15 17 67 chain 4490 chr3 198295559 + 145634645 145634738 MLT1C 463 + 368 462 88393 29 19 21 7 1 0 37 chain 25624 chr3 198295559 + 145710494 145710846 LTR7 482 + 0 482 48277 71 4 93 102 0 31 9 8 18 158 chain 287189 chr3 198295559 + 145710848 145714434 HERVH-int 3825 + 0 3825 7221 451 0 3 79 5 0 37 1 0 9 36 25 15 0 37 26 1 0 9 7 27 57 9 8 347 1 0 101 15 0 117 0 1 83 9 0 26 0 2 10 1 0 309 0 1 292 22 27 309 0 1 5 5 4 245 0 1 406 9 11 39 8 218 260 0 2 225 chain 30692 chr3 198295559 + 145715692 145716095 LTR7 482 + 0 482 41390 69 8 46 118 0 31 50 0 10 158 chain 3084 chr3 198295559 + 145734800 145734833 MER34 540 + 449 482 98942 33 chain 76106 chr3 198295559 + 145823395 145824243 L1PA3long 6157 + 3129 3977 22540 848 chain 552718 chr3 198295559 + 145917903 145924052 L1PA3long 6157 + 1 6157 569 159 2 0 5 0 2 31 1 7 2063 0 2 3554 1 0 333 chain 551071 chr3 198295559 + 145927778 145933791 L1PA2 6032 + 5 6025 669 1273 0 5 1693 0 2 71 1 0 120 0 1 2855 chain 3415 chr3 198295559 + 145943155 145943193 MER5B 177 + 134 172 95946 38 chain 40322 chr3 198295559 + 145972418 145972955 MLT2A2 560 + 0 560 34432 17 0 2 131 13 33 56 0 1 4 2 1 231 0 1 83 chain 62168 chr3 198295559 + 146016369 146017119 LTR17 781 + 0 779 25827 119 0 9 199 0 1 64 1 0 108 3 0 232 9 31 5 0 1 10 chain 48488 chr3 198295559 + 146017599 146018284 LTR30 714 + 0 704 30124 16 0 1 68 1 0 168 13 18 168 11 22 54 0 5 100 1 0 4 0 3 12 5 0 7 6 8 38 1 0 12 chain 168808 chr3 198295559 + 146095914 146097805 SVA_E 1901 + 0 1892 11163 153 1 0 664 1 0 19 1 0 87 0 46 5 1 0 41 6 13 234 48 0 630 chain 3957 chr3 198295559 + 146097127 146097175 SVA_E 1901 + 960 1008 47770 48 chain 26684 chr3 198295559 + 146097828 146098219 L1PA8 5853 + 5470 5853 46705 94 1 0 26 10 11 7 2 0 73 1 0 8 1 0 51 8 7 13 1 0 46 2 0 47 chain 36226 chr3 198295559 + 146112080 146112570 L1PA8 5853 + 5276 5760 37254 239 0 1 48 2 0 46 2 0 67 19 17 46 2 1 19 chain 84890 chr3 198295559 + 146113425 146115208 MER11B 1079 + 0 1079 20642 607 0 1 162 1 3 47 12 19 37 0 1 16 716 0 140 0 1 17 1 0 13 1 2 13 chain 4827 chr3 198295559 + 146136933 146137010 Tigger4b 360 + 284 360 86555 13 2 0 5 3 4 54 chain 20637 chr3 198295559 + 146180212 146180513 L1PB1 5432 + 4626 4932 55574 127 0 1 57 41 45 76 chain 67922 chr3 198295559 + 146183161 146183924 L1PA4 6152 + 4409 5172 24465 763 chain 105533 chr3 198295559 + 146207860 146209414 L1PB1 5432 + 3896 5427 17616 127 4 0 141 0 4 34 0 1 334 0 17 71 3 1 198 15 17 124 8 7 18 1 7 40 22 25 36 14 7 9 1 0 24 1 0 9 1 0 11 5 1 8 2 0 52 1 0 13 5 4 45 6 0 12 16 4 30 2 0 5 1 0 14 0 5 3 7 0 6 10 0 6 0 6 19 1 0 13 1 0 18 2 0 5 chain 40075 chr3 198295559 + 146252426 146252913 MER9a1 513 + 0 513 34606 164 1 2 37 1 0 46 0 22 90 1 5 147 chain 7105 chr3 198295559 + 146254979 146255064 MSTB 430 + 323 415 77247 24 0 7 61 chain 43310 chr3 198295559 + 146322747 146323296 THE1C-int 1605 + 1045 1596 32558 148 7 8 301 1 2 92 chain 19496 chr3 198295559 + 146323305 146323622 THE1C 375 + 0 318 57029 63 59 60 195 chain 101372 chr3 198295559 + 146323664 146324871 L1PA7 6471 + 5249 6461 18144 365 0 3 519 0 1 178 0 1 145 chain 79644 chr3 198295559 + 146346448 146347496 MER11C 1089 + 0 1063 21709 247 0 9 61 0 4 211 47 46 112 1 5 4 1 0 38 0 1 127 0 1 24 1 0 30 1 0 143 chain 24048 chr3 198295559 + 146353816 146354213 LTR7 482 + 2 469 50731 66 30 18 15 15 14 17 0 51 41 8 40 43 0 2 56 3 1 103 chain 284501 chr3 198295559 + 146354228 146357806 HERVH-int 3825 + 0 3825 7301 214 2 7 175 126 355 12 0 2 15 0 1 5 7 9 279 0 1 363 0 4 131 0 5 583 8 0 147 0 9 123 6 5 960 47 45 375 chain 28351 chr3 198295559 + 146359062 146359456 LTR7 482 + 0 475 44341 26 0 11 31 9 47 109 9 10 30 0 31 180 chain 28543 chr3 198295559 + 146361551 146361857 AluYg6 310 + 0 304 44047 131 2 0 173 chain 28947 chr3 198295559 + 146362085 146362483 LTR7 482 + 0 470 43408 51 26 64 97 0 1 7 0 1 37 0 1 6 0 31 174 chain 310021 chr3 198295559 + 146362497 146366306 HERVH-int 3825 + 0 3825 6615 532 5 0 38 0 2 7 2 1 24 1 14 12 25 22 4 1 0 40 12 15 68 1 0 59 0 3 88 41 42 49 8 9 4 1 0 707 0 2 1310 38 40 366 0 1 366 chain 32263 chr3 198295559 + 146403834 146404287 LTR10F 562 + 13 554 40136 36 0 4 71 17 0 19 1 88 17 1 17 77 5 7 123 4 0 82 chain 506517 chr3 198295559 + 146477115 146483424 L1PA6 6164 + 0 6147 2911 250 0 1 335 1 2 423 0 13 26 0 8 182 3 0 225 6 5 547 0 1 23 0 1 198 1 2 87 1 2 152 0 6 700 0 1 113 1 0 204 0 4 55 0 1 370 0 1 423 0 4 504 0 3 163 0 1 123 0 1 508 0 1 252 257 15 21 10 45 145 chain 139836 chr3 198295559 + 146486071 146487902 L1PA10 4194 + 2337 4161 13110 293 1 0 18 4 2 24 0 2 278 0 3 99 0 1 33 8 9 437 23 23 194 4 0 36 2 1 292 6 4 30 3 0 34 1 0 11 chain 91516 chr3 198295559 + 146497125 146498517 LTR12C 1709 + 0 1709 19415 29 5 14 21 18 18 108 73 74 220 11 20 105 5 7 142 0 37 35 0 288 89 24 0 17 11 4 282 4 8 100 9 7 84 chain 85926 chr3 198295559 + 146522264 146523231 LTR5_Hs 974 + 1 974 20459 7 0 4 672 0 1 216 0 1 72 chain 25971 chr3 198295559 + 146557009 146557350 MER9a3 513 + 132 513 47760 47 0 1 78 0 17 36 5 26 97 0 1 78 chain 7755 chr3 198295559 + 146571476 146571569 U6 107 + 0 93 75472 93 chain 45744 chr3 198295559 + 146606906 146607418 L1PA5 6144 + 5159 5671 31190 512 chain 4791 chr3 198295559 + 146625706 146625830 L1MA3 4352 + 4200 4352 86739 34 22 54 14 0 1 5 0 14 8 19 0 22 chain 17036 chr3 198295559 + 146701632 146701910 L1P4a 3072 + 35 299 59770 14 1 0 17 3 1 47 13 12 119 9 0 30 6 5 19 chain 12894 chr3 198295559 + 146702384 146702693 MER1B 344 + 2 339 65264 16 66 79 73 1 4 48 51 63 54 chain 418523 chr3 198295559 + 146726438 146731610 L1PA7 6471 + 1271 6469 4903 724 4 0 414 0 1 110 0 2 119 9 0 22 0 2 435 0 4 85 3 4 311 0 1 16 0 2 6 4 2 300 1 2 643 13 10 185 0 4 97 0 3 177 1 0 27 4 0 7 3 5 22 4 1 132 11 12 133 0 1 224 0 20 32 0 2 68 0 2 58 0 2 153 0 2 460 1 0 154 chain 14959 chr3 198295559 + 146772809 146773108 LTR12C 1709 + 932 1218 62311 101 0 88 39 101 0 58 chain 23571 chr3 198295559 + 146916557 146916904 THE1B 368 + 1 368 51475 158 0 10 29 1 0 4 36 47 119 chain 28655 chr3 198295559 + 146934775 146935093 L1PA3long 6157 + 5826 6144 43866 318 chain 32195 chr3 198295559 + 146936982 146937445 MLT2A1 477 + 0 477 40192 169 4 1 215 13 0 11 2 0 14 11 43 24 chain 188087 chr3 198295559 + 146937445 146940199 HERVL-int 5654 + 0 2506 10206 102 4 3 21 17 0 3 0 18 135 0 1 16 0 10 58 0 1 60 1 24 165 1 0 60 2 0 391 0 1 103 306 0 72 0 1 47 12 11 338 6 26 96 0 1 87 1 5 650 chain 66474 chr3 198295559 + 147024502 147025229 L1PA2 6032 + 5304 6031 24832 727 chain 29028 chr3 198295559 + 147047436 147047819 MLT2A1 477 + 0 382 43277 167 10 7 59 0 1 4 7 6 69 0 2 67 chain 7769 chr3 198295559 + 147053303 147053660 MLT1B 390 + 22 352 75438 27 250 223 80 chain 64891 chr3 198295559 + 147059774 147060548 LTR17 781 + 0 772 25217 326 2 1 154 5 4 287 chain 5720 chr3 198295559 + 147063302 147063429 MER41-int 2638 + 112 232 82255 53 23 18 20 18 16 13 chain 290074 chr3 198295559 + 147063500 147066976 L1PA6 6164 + 2708 6162 7125 611 1 0 198 1 2 4 1 0 671 1 0 4 0 1 103 8 5 488 22 0 240 0 1 276 0 4 500 1 0 13 1 0 4 0 1 328 chain 159645 chr3 198295559 + 147095563 147097338 L1PA3long 6157 + 4370 6156 11771 187 0 16 787 2 1 348 5 1 446 chain 21418 chr3 198295559 + 147104131 147104455 THE1B 368 + 0 348 54616 44 0 15 49 2 0 64 2 1 23 1 3 102 0 1 4 19 28 14 chain 56275 chr3 198295559 + 147109214 147109825 L1PA3long 6157 + 4677 5288 27494 611 chain 5356 chr3 198295559 + 147154690 147154754 LTR12C 1709 + 845 909 83929 64 chain 8970 chr3 198295559 + 147154801 147154976 LTR12C 1709 + 793 967 72630 44 1 0 46 8 49 22 41 0 13 chain 47749 chr3 198295559 + 147176514 147177087 L1PBa 3878 + 993 1566 30378 573 chain 14268 chr3 198295559 + 147251463 147251766 L1PB1 5432 + 5121 5392 63242 13 1 0 10 1 0 12 2 0 3 2 0 9 2 0 25 7 0 27 2 1 14 1 2 44 1 0 15 28 16 20 1 0 14 2 0 27 1 0 19 chain 112011 chr3 198295559 + 147271410 147273300 L1MA1 4479 + 242 4190 16814 32 8 6 83 6 8 21 1 0 50 9 1816 14 22 1 115 27 28 51 3 10 122 10 9 62 1 0 101 2 0 33 2 1 61 1 0 10 1 2 80 1 0 25 22 20 81 0 1 6 1 0 46 1 0 4 0 1 7 10 8 16 4 0 78 1 0 12 13 9 11 9 1 22 17 15 68 4 0 129 1 0 196 0 317 38 16 15 22 2 0 30 36 28 8 7 0 18 chain 99277 chr3 198295559 + 147275344 147276644 L1P2 5180 + 1884 3184 18379 173 4 6 79 8 15 162 10 0 47 0 1 817 chain 44680 chr3 198295559 + 147494485 147495027 L1PA7 6471 + 5931 6467 31749 398 1 0 132 5 0 6 chain 2940 chr3 198295559 + 147537462 147537497 L1M3 994 + 799 834 100498 35 chain 28605 chr3 198295559 + 147538853 147539216 MLT2A2 560 + 0 368 43944 113 1 3 76 15 18 158 chain 11670 chr3 198295559 + 147559970 147560142 Tigger3a 397 + 43 264 67444 32 16 65 124 chain 24173 chr3 198295559 + 147638230 147638584 L1PB1 5432 + 2880 3236 50535 52 21 23 47 4 5 6 1 0 223 chain 436902 chr3 198295559 + 147719933 147725588 HERVL-int 5654 + 0 5654 4626 20 2 1 61 0 1 281 7 5 47 0 2 175 10 0 62 16 9 101 7 3 57 1 7 386 0 1 441 26 27 205 0 1 483 1 2 133 0 1 448 0 3 39 0 1 202 0 10 5 2 1 189 6 18 4 0 1 213 1 0 128 21 7 246 0 3 291 0 1 43 1 5 268 0 1 579 30 14 163 18 20 18 0 3 218 chain 125541 chr3 198295559 + 147726217 147727590 L1PA3long 6157 + 4779 6152 14620 1373 chain 108561 chr3 198295559 + 147727831 147729031 L1PA5 6144 + 4676 5877 17242 74 0 1 1126 chain 21654 chr3 198295559 + 147745675 147745918 L1PA5 6144 + 5902 6144 54283 129 1 0 113 chain 16565 chr3 198295559 + 147753386 147753662 L1PA8 5853 + 5592 5853 60297 15 6 4 66 1 0 15 2 0 48 2 1 19 9 8 36 8 0 49 chain 13474 chr3 198295559 + 147829916 147830089 L1PA8 5853 + 5682 5853 64350 62 2 1 17 1 0 91 chain 49339 chr3 198295559 + 147979414 147979989 L1PA7 6471 + 5889 6464 29821 575 chain 5966 chr3 198295559 + 148080842 148080917 MADE1 96 + 5 96 81203 46 0 16 29 chain 78360 chr3 198295559 + 148111767 148112817 MER11C 1089 + 0 1073 22012 247 0 9 61 0 4 65 1 0 147 5 33 10 30 7 107 1 5 4 1 0 38 0 1 51 0 1 75 0 1 54 1 0 141 0 1 11 chain 43958 chr3 198295559 + 148128357 148128911 MLT2A2 560 + 0 560 32157 66 0 1 129 8 13 351 chain 82188 chr3 198295559 + 148133685 148134790 HERVL-int 5654 + 4508 5640 21205 53 0 3 46 1 0 37 12 13 97 0 6 93 9 30 127 1 2 414 4 0 174 0 1 22 1 0 14 chain 42245 chr3 198295559 + 148134806 148135351 MLT2A2 560 + 0 560 33219 8 0 6 52 0 1 390 0 6 37 8 10 50 chain 29872 chr3 198295559 + 148151528 148151957 LTR7B 505 + 0 503 42163 105 0 10 69 6 68 18 8 10 42 0 1 39 1 0 26 0 1 52 15 14 48 chain 295699 chr3 198295559 + 148151959 148155688 HERVH-int 3825 + 0 3825 6956 211 0 11 111 1 0 169 0 1 27 1 0 40 1 0 10 1 0 12 4 0 5 13 7 14 1 0 15 3 0 46 86 0 41 42 0 59 1 0 447 15 0 459 8 35 280 0 4 883 0 1 155 40 42 35 8 218 260 0 2 225 chain 3126 chr3 198295559 + 148152686 148152727 HERVH-int 3825 + 677 717 98574 20 1 0 20 chain 30037 chr3 198295559 + 148156931 148157354 LTR7B 505 + 0 496 42017 105 0 10 60 0 38 12 3 27 26 0 2 42 0 1 42 1 0 23 0 1 19 0 1 32 14 13 21 2 0 21 chain 79782 chr3 198295559 + 148158876 148159930 MER11C 1089 + 0 1069 21669 246 0 9 62 0 4 65 1 0 146 47 46 112 11 13 34 0 1 127 0 1 54 1 0 144 0 1 4 chain 343441 chr3 198295559 + 148303471 148307231 L1PA3long 6157 + 2391 6157 6005 2914 1 5 76 0 2 769 chain 549778 chr3 198295559 + 148347272 148353405 L1PA4 6152 + 0 6151 762 131 0 4 1592 0 1 841 0 4 709 2 0 2000 0 4 12 0 4 78 0 2 619 0 1 149 chain 39366 chr3 198295559 + 148414243 148414694 LTR7 482 + 0 482 35103 263 1 32 187 chain 297605 chr3 198295559 + 148414696 148418387 HERVH-int 3825 + 0 3825 6899 212 0 11 311 5 0 36 1 0 10 65 0 9 4 0 14 9 1 15 1 0 12 3 0 22 42 0 38 2 22 16 2 1 9 0 5 35 1 0 447 15 0 459 4 31 284 1 5 1115 10 220 249 0 2 81 0 1 152 chain 38472 chr3 198295559 + 148419645 148420096 LTR7 482 + 0 482 35741 254 1 0 12 0 31 68 1 2 115 chain 61237 chr3 198295559 + 148430799 148431458 L1PA2 6032 + 5373 6032 26055 659 chain 182569 chr3 198295559 + 148460888 148463712 L1PB1 5432 + 2894 5422 10465 242 0 4 317 4 5 23 1 2 245 2 0 19 0 2 148 0 1 83 3 0 198 0 45 172 7 8 89 0 1 52 2 0 78 3 0 75 3 6 95 10 9 290 3 2 11 7 0 22 1 0 4 37 30 48 2 1 15 1 0 44 306 0 16 24 12 19 2 0 5 2 1 13 2 0 24 1 0 17 5 4 13 1 0 18 chain 94081 chr3 198295559 + 148478239 148479491 L1P2 5180 + 362 1605 19031 86 19 0 117 1 0 106 3 0 112 0 15 273 28 28 502 1 0 4 chain 396919 chr3 198295559 + 148479492 148484288 L1PA6 6164 + 1351 6156 5200 392 1 11 459 0 2 119 0 4 337 0 5 172 18 17 92 10 13 210 23 7 216 0 1 94 0 1 191 3 0 20 0 1 370 0 1 562 0 1 480 1 0 284 0 3 237 8 6 497 chain 11944 chr3 198295559 + 148493426 148493583 MSTD 398 + 214 379 66928 16 0 8 141 chain 60668 chr3 198295559 + 148525368 148526190 LTR12D 1347 + 336 1346 26186 99 0 150 114 1 42 29 4 5 45 0 1 199 37 32 29 2 1 228 0 1 35 chain 2956 chr3 198295559 + 148525859 148525895 LTR12D 1347 + 1117 1153 81785 36 chain 5173 chr3 198295559 + 148544229 148544289 L1PREC2 3366 + 2659 2719 84808 60 chain 5200 chr3 198295559 + 148556803 148556882 MADE1 96 + 0 96 84675 23 5 22 51 chain 103691 chr3 198295559 + 148562361 148563554 L1PA6 6164 + 1522 2717 17850 519 0 1 283 0 1 391 chain 56804 chr3 198295559 + 148570608 148571322 LTR12 884 + 0 884 27324 25 2 1 37 0 173 139 3 1 287 0 1 43 2 1 176 chain 66648 chr3 198295559 + 148577593 148578414 LTR12 884 + 0 882 24784 24 1 0 31 0 41 261 0 22 330 1 0 173 chain 102624 chr3 198295559 + 148579726 148580841 L1PA3long 6157 + 5042 6157 17991 1115 chain 4615 chr3 198295559 + 148617894 148618016 LTR12 884 + 70 142 87721 12 25 0 36 28 3 21 chain 12382 chr3 198295559 + 148629552 148629702 MLT2D 439 + 46 196 66174 150 chain 2998 chr3 198295559 + 148637683 148637716 MLT2D 439 + 406 439 99851 33 chain 30946 chr3 198295559 + 148637904 148638471 L1PB1 5432 + 4873 5424 41179 230 2 3 10 3 0 22 42 34 41 12 24 44 1 0 21 15 6 17 10 7 14 3 1 5 0 1 17 1 0 21 1 0 13 2 1 15 1 0 4 chain 5104 chr3 198295559 + 148638563 148638640 MER2 342 + 136 215 85144 28 5 7 44 chain 5763 chr3 198295559 + 148641824 148641896 MADE1 96 + 0 96 82073 22 0 24 50 chain 3293 chr3 198295559 + 148676842 148676880 tRNA-Gly-GGA 38 + 0 38 97087 38 chain 8922 chr3 198295559 + 148678500 148678602 L1PA3long 6157 + 5853 5955 72733 102 chain 136720 chr3 198295559 + 148760642 148762278 L1PA7 6471 + 4724 6366 13365 210 1 0 15 2 0 598 0 1 541 0 1 8 0 2 9 2 0 199 9 16 42 chain 22966 chr3 198295559 + 148795814 148796093 AluSg4 309 + 10 286 52417 16 1 0 98 4 2 160 chain 67558 chr3 198295559 + 148802076 148802847 L1PA5 6144 + 5376 6143 24548 399 2 1 360 3 0 7 chain 130226 chr3 198295559 + 148810829 148812401 THE1A-int 1579 + 0 1579 14008 85 2 0 276 1 2 139 0 1 297 0 1 693 0 5 70 0 1 9 chain 28428 chr3 198295559 + 148812401 148812756 THE1A 353 + 0 353 44224 111 1 0 91 1 0 151 chain 6848 chr3 198295559 + 148812826 148812909 MER20 218 + 135 218 78146 83 chain 11449 chr3 198295559 + 148852295 148852479 MER20 218 + 29 214 67834 26 1 0 26 7 12 27 1 0 39 1 0 4 4 0 5 0 3 43 chain 9339 chr3 198295559 + 148920769 148920896 L1MB1 2102 + 205 333 71837 100 1 0 15 1 3 10 chain 2957 chr3 198295559 + 148966330 148966393 MIR 256 + 142 207 100300 14 17 19 32 chain 20197 chr3 198295559 + 148977234 148977576 THE1B 368 + 0 368 56142 44 5 20 108 66 77 119 chain 95889 chr3 198295559 + 149109286 149110595 LTR12C 1709 + 84 1709 18784 36 1 0 92 3 1 64 4 0 9 6 10 42 11 51 74 0 2 6 10 0 179 0 278 143 0 47 95 24 0 9 13 6 312 1 0 7 5 0 80 1 0 82 chain 20675 chr3 198295559 + 149115246 149115566 MER1B 344 + 30 335 55529 33 3 0 37 6 3 113 4 0 51 23 18 50 chain 40890 chr3 198295559 + 149196808 149197259 LTR7 482 + 0 482 34032 263 1 32 187 chain 11807 chr3 198295559 + 149219692 149219846 THE1B-int 1605 + 0 156 67193 12 3 5 139 chain 5477 chr3 198295559 + 149219916 149219976 THE1B 368 + 246 306 83321 60 chain 11379 chr3 198295559 + 149238388 149238520 L1PA10 4194 + 2273 2405 67955 132 chain 96207 chr3 198295559 + 149283838 149285794 LTR12C 1709 + 0 1709 18749 232 6 5 4 0 1 72 1 0 24 0 43 78 0 1 4 3 0 6 7 1 27 0 1 151 0 278 160 0 47 89 11 4 177 0 106 47 1 0 60 712 7 84 chain 6302 chr3 198295559 + 149285017 149285090 LTR12C 1709 + 1636 1709 79988 73 chain 13654 chr3 198295559 + 149294611 149294924 HUERS-P2-int 2744 + 2447 2742 64082 65 2 0 32 4 0 9 14 12 16 49 48 26 3 0 10 5 6 18 1 0 8 3 1 5 2 0 12 2 0 27 chain 31356 chr3 198295559 + 149323475 149323880 MER11A 1151 + 0 501 40842 61 1 100 66 2 1 66 4 0 37 0 1 111 0 1 57 chain 22945 chr3 198295559 + 149334869 149335126 L1PA2 6032 + 5775 6032 52454 257 chain 48682 chr3 198295559 + 149337463 149338019 L1PA5 6144 + 5586 6144 30058 129 0 2 427 chain 9845 chr3 198295559 + 149359330 149359455 L1MA9 1812 + 1175 1299 70729 14 1 0 110 chain 102121 chr3 198295559 + 149380079 149381409 SVA_D 2077 + 850 2074 18051 28 1 0 25 1 0 14 2 0 27 126 0 48 0 51 329 6 18 11 41 0 530 0 2 141 chain 7654 chr3 198295559 + 149380177 149380303 SVA_D 2077 + 1254 1297 46901 10 88 3 4 0 1 8 0 1 16 chain 3258 chr3 198295559 + 149380697 149380738 SVA_D 2077 + 1262 1303 34292 41 chain 12513 chr3 198295559 + 149440026 149440244 MER2 342 + 96 295 65966 18 9 6 104 34 18 53 chain 22167 chr3 198295559 + 149551021 149551309 AluSp 311 + 5 292 53612 14 4 5 189 1 0 68 1 0 11 chain 72060 chr3 198295559 + 149692934 149694111 L1MA3 4352 + 2185 3345 23522 128 1 0 151 79 76 46 1 0 286 0 1 34 14 0 116 67 36 112 0 30 65 32 34 45 chain 20650 chr3 198295559 + 149698150 149698516 THE1C 375 + 0 375 55562 13 2 0 34 0 6 17 20 21 88 59 64 107 1 0 25 chain 162314 chr3 198295559 + 149798273 149800179 L1PA7 6471 + 4510 6456 11592 164 0 4 37 2 9 425 0 5 33 0 1 19 1 0 414 1 0 97 0 3 322 0 1 246 13 34 132 chain 55575 chr3 198295559 + 149804599 149805198 L1PA4 6152 + 4129 4728 27694 599 chain 4365 chr3 198295559 + 149823955 149824156 L1MC4 1079 + 81 294 89083 41 16 17 12 110 121 22 chain 27442 chr3 198295559 + 149869323 149869619 AluYa5 310 + 0 295 45651 123 1 0 172 chain 85167 chr3 198295559 + 149945301 149946320 L1P1 4361 + 367 1383 20590 65 4 1 950 chain 63780 chr3 198295559 + 150009138 150010216 L1PREC2 3366 + 2051 3075 25456 30 1 0 109 22 18 111 19 17 88 1 0 320 1 0 7 3 1 47 9 8 38 55 43 11 12 7 15 8 6 24 37 20 35 6 4 41 3 1 7 1 0 4 1 0 12 chain 14253 chr3 198295559 + 150021656 150021915 L1P4 1494 + 1152 1410 63262 67 48 45 6 0 4 29 1 2 45 1 0 40 2 0 20 chain 234748 chr3 198295559 + 150025632 150029033 L1PB1 5432 + 2003 5423 8606 209 0 4 120 0 5 106 1 0 4 8 9 28 2 6 250 33 34 47 3 4 57 0 3 31 14 13 6 0 2 43 22 23 253 6 7 25 6 7 213 5 15 56 7 4 141 1 4 230 7 6 191 5 9 142 1 0 189 6 12 115 2 0 186 0 1 201 65 89 11 13 0 24 1 0 6 1 0 14 5 1 9 2 0 51 4 2 16 1 0 44 1 0 10 28 18 17 14 11 9 2 0 24 1 0 21 1 0 13 1 0 10 1 0 9 chain 17729 chr3 198295559 + 150038403 150039331 THE1B 368 + 0 356 58979 82 4 1 24 9 10 60 66 74 19 577 0 36 7 6 44 chain 22538 chr3 198295559 + 150081721 150081963 AluYk12 309 + 17 306 53059 69 0 47 173 chain 51562 chr3 198295559 + 150085542 150087441 L1PA3long 6157 + 4281 6157 29011 866 22 0 197 2 1 41 0 1 511 1 0 259 chain 6280 chr3 198295559 + 150118860 150118939 MER4D 903 + 825 903 80062 72 1 0 6 chain 13633 chr3 198295559 + 150132888 150133166 MER30 238 + 0 238 64113 73 56 2 21 23 34 23 0 6 35 3 0 44 chain 73147 chr3 198295559 + 150174702 150175831 L1PB1 5432 + 4321 5419 23288 118 9 10 89 0 2 80 1 0 6 10 0 10 9 7 258 1 3 178 1 10 11 1 0 14 3 0 20 1 0 10 20 15 5 2 0 53 2 1 16 1 0 44 2 1 14 3 0 7 14 5 19 25 23 20 1 0 21 1 0 13 1 0 15 chain 3657 chr3 198295559 + 150227760 150227805 L1MC5 759 + 380 426 93934 41 0 1 4 chain 22802 chr3 198295559 + 150270591 150270944 THE1B 368 + 0 368 52658 40 0 15 12 0 1 104 1 0 29 16 17 69 28 27 54 chain 51908 chr3 198295559 + 150321890 150322588 L1PA16 3655 + 1600 2303 28907 132 5 9 54 1 0 61 1 2 284 2 0 120 1 4 37 chain 84247 chr3 198295559 + 150322785 150323774 LTR12C 1709 + 0 1709 20759 565 2 1 11 2 1 72 0 485 89 0 4 164 0 233 84 chain 3120 chr3 198295559 + 150382109 150382142 L1ME3A 1206 + 441 474 98625 33 chain 31093 chr3 198295559 + 150473327 150473682 L1PA5 6144 + 5773 6132 41059 180 0 4 175 chain 5992 chr3 198295559 + 150488185 150488254 L1MB1 2102 + 375 444 81114 69 chain 31798 chr3 198295559 + 150517638 150517989 MER9a2 513 + 0 351 40496 351 chain 31208 chr3 198295559 + 150602021 150602449 LTR7B 505 + 0 495 40969 90 0 3 15 0 10 66 14 68 26 0 2 85 1 0 76 14 13 41 chain 106555 chr3 198295559 + 150615538 150616697 L1PA3long 6157 + 4334 5493 17488 1159 chain 15651 chr3 198295559 + 150631629 150631895 MER1B 344 + 93 344 61466 33 5 9 82 1 0 26 18 0 32 10 11 39 1 0 19 chain 23122 chr3 198295559 + 150651947 150652313 MSTA 426 + 0 426 52179 103 0 1 29 15 18 47 11 6 13 6 0 6 1 6 24 0 62 111 chain 37904 chr3 198295559 + 150688527 150688992 MER4A1 472 + 0 472 36137 17 0 2 228 0 5 220 chain 201131 chr3 198295559 + 150691674 150694228 MER4-int 2692 + 74 2669 9680 25 2 0 8 1 0 330 0 5 144 6 2 129 1 0 41 1 0 78 0 1 81 0 1 175 0 3 154 1 0 226 1 6 29 5 0 32 1 0 174 0 1 60 0 1 81 2 1 156 0 1 6 11 6 240 1 0 285 6 50 35 0 2 26 chain 341787 chr3 198295559 + 150711838 150716183 L1P3 4156 + 0 4139 6029 251 1 0 69 11 10 71 6 0 1369 14 10 39 1 2 24 1 0 72 3 4 210 1 3 25 16 0 195 0 3 40 3 4 228 2 1 256 0 4 26 1 0 1075 0 2 18 189 4 47 7 6 39 2 0 6 1 0 26 chain 39186 chr3 198295559 + 150716602 150717046 L1PA7 6471 + 5775 6220 35223 361 0 1 83 chain 26381 chr3 198295559 + 150824229 150824511 AluYa5 310 + 22 303 47148 110 1 0 171 chain 6677 chr3 198295559 + 150833944 150834037 MER4-int 2692 + 2114 2204 78714 27 3 0 63 chain 40212 chr3 198295559 + 150854265 150854777 LTR17 781 + 265 781 34514 58 0 4 367 22 0 21 1 23 43 chain 376752 chr3 198295559 + 150856387 150860697 HERV17-int 4347 + 13 4347 5540 14 1 0 50 2 1 35 2 0 25 6 5 133 0 16 365 2 0 284 0 1 1272 0 1 550 0 8 374 1 0 647 0 6 547 chain 29072 chr3 198295559 + 150861011 150861337 LTR17 781 + 0 326 43229 326 chain 210522 chr3 198295559 + 150947167 150950404 L1PA14 3548 + 533 3484 9337 323 0 4 212 5 7 96 0 1 148 0 4 113 10 12 128 320 7 214 1 2 80 1 0 96 0 1 324 6 7 223 2 1 52 0 12 33 0 1 43 16 15 141 5 40 41 2 0 24 3 1 8 0 1 5 2 0 48 25 21 92 4 0 17 2 0 5 6 5 78 1 0 111 1 0 12 5 1 36 4 2 12 1 0 3 1 0 19 1 0 40 6 0 10 1 0 19 chain 171081 chr3 198295559 + 150963026 150965057 L1PA7 6471 + 4421 6467 11046 847 0 1 150 0 1 58 4 3 139 7 14 66 0 2 433 0 5 327 chain 37647 chr3 198295559 + 150984648 150985138 MLT2A2 560 + 2 502 36310 178 1 0 213 9 20 89 chain 20001 chr3 198295559 + 150985144 150985400 L1PA6 6164 + 5903 6161 56383 89 1 2 124 0 1 42 chain 23299 chr3 198295559 + 150997729 150998154 L1MB2 1706 + 1294 1691 51930 187 1 0 28 4 5 47 17 10 8 4 0 5 3 0 14 1 0 13 1 0 16 47 35 29 chain 32326 chr3 198295559 + 151030361 151031396 MLT2A1 477 + 0 477 40095 141 4 5 23 1 5 107 0 1 99 583 24 6 1 0 8 1 0 10 2 0 29 1 0 19 chain 8285 chr3 198295559 + 151188098 151188184 5S 121 + 0 86 74198 86 chain 544314 chr3 198295559 + 151241772 151247772 L1PA2 6032 + 1 6030 1065 73 0 1 82 0 11 89 1 0 453 0 7 231 0 1 2138 1 0 1871 0 1 171 0 1 143 0 6 4 0 1 410 0 1 178 1 2 154 chain 11569 chr3 198295559 + 151285053 151285673 L1PB1 5432 + 5144 5422 67627 12 2 0 3 2 0 9 12 10 40 1 3 16 1 0 44 1 0 6 378 48 11 2 0 27 1 0 19 1 0 11 2 1 14 1 0 4 chain 29788 chr3 198295559 + 151465746 151466172 MER57A1 433 + 0 423 42250 192 0 1 89 0 1 60 46 41 39 chain 497238 chr3 198295559 + 151483515 151489977 L1PA7 6471 + 0 6466 3231 146 6 7 38 0 1 52 0 10 214 0 1 92 1 2 19 44 44 17 0 1 111 1 0 64 1 0 89 0 3 299 0 4 23 12 7 31 71 70 4 0 1 196 1 4 171 7 7 192 1 2 555 0 1 99 2 0 26 8 9 25 17 0 252 0 4 206 1 5 88 0 3 14 45 20 251 0 2 21 3 0 12 6 7 26 3 7 679 10 12 235 0 1 181 0 8 284 2 0 662 1 0 183 0 1 38 0 1 46 0 1 178 0 1 400 chain 20052 chr3 198295559 + 151498368 151498598 L1PA4 6152 + 3694 3925 56310 84 0 1 146 chain 521880 chr3 198295559 + 151509490 151515446 L1PA4 6152 + 0 5968 2185 216 1 2 654 0 9 35 6 5 76 0 3 805 1 0 459 0 2 517 0 2 398 2 0 30 0 1 475 1 0 148 8 2 82 0 2 112 1 0 755 5 7 196 0 3 897 1 0 75 chain 4799 chr3 198295559 + 151516731 151516785 MER57B1 401 + 347 401 86708 54 chain 218557 chr3 198295559 + 151520538 151523782 L1PA14 3548 + 90 3379 9080 56 1 0 3 3 0 68 1 0 9 10 9 17 1 2 14 2 0 28 9 7 24 4 5 56 1 2 50 8 4 49 27 30 52 1 0 32 1 2 101 0 3 17 7 12 114 9 13 9 1 5 76 10 14 194 0 1 25 2 0 180 0 4 126 0 3 6 7 9 16 0 4 190 1 5 112 0 3 37 1 0 154 0 3 179 6 7 15 0 3 199 0 4 83 3 2 34 1 17 58 0 1 42 1 0 249 2 1 9 1 0 5 9 7 25 1 0 9 15 11 104 2 0 6 5 3 13 2 0 6 1 0 29 0 1 54 1 0 35 9 19 23 12 12 22 16 11 36 chain 493653 chr3 198295559 + 151528406 151534796 L1PA7 6471 + 0 6452 3321 179 26 25 36 16 24 8 0 1 78 0 1 51 8 0 21 2 3 47 1 0 87 3 4 49 0 1 166 0 1 4 28 24 1019 52 48 49 0 1 156 0 6 53 8 1 28 0 1 337 6 32 98 1 2 248 0 4 190 0 1 127 0 1 317 2 1 14 0 4 27 1 4 249 4 0 7 8 9 95 0 4 302 6 6 60 0 3 107 0 1 42 1 2 130 1 10 15 1 0 53 0 2 98 7 10 201 1 0 23 0 1 11 0 3 16 2 6 573 17 14 191 1 4 397 6 5 43 3 5 8 3 2 165 chain 39461 chr3 198295559 + 151561978 151562527 MER41A 554 + 0 554 35035 110 0 4 57 1 0 74 17 18 56 1 0 5 5 6 100 0 1 123 chain 28370 chr3 198295559 + 151587645 151588014 THE1B 368 + 0 366 44315 170 6 4 119 1 0 73 chain 3413 chr3 198295559 + 151594711 151594770 L1MA4 2864 + 2747 2804 95973 20 8 6 31 chain 32738 chr3 198295559 + 151612984 151613349 L1PA4 6152 + 4283 4665 39725 196 0 17 169 chain 134310 chr3 198295559 + 151613350 151614831 L1PA4 6152 + 4665 6151 13617 635 0 5 846 chain 3566 chr3 198295559 + 151629545 151629613 MADE1 96 - 12 96 94685 26 5 21 37 chain 11264 chr3 198295559 + 151649930 151650310 MLT2D 439 + 0 372 68146 19 4 6 65 7 5 47 127 124 30 44 45 18 6 0 13 chain 18225 chr3 198295559 + 151679592 151679838 AluY 311 + 29 269 58434 104 25 19 117 chain 38095 chr3 198295559 + 151701258 151701781 MER9a3 513 + 0 508 35996 18 0 2 93 0 2 141 1 0 95 29 0 14 0 10 58 1 2 73 chain 363615 chr3 198295559 + 151702443 151706723 HERVK9-int 4720 + 334 4626 5757 2050 0 3 315 2 1 407 0 10 27 0 1 436 1 0 748 0 1 33 1 0 260 chain 94431 chr3 198295559 + 151730246 151731360 L1P1 4361 + 2156 3281 18975 612 15 27 382 1 0 104 chain 5000 chr3 198295559 + 151810346 151810873 HERVFH21-int 991 + 535 866 85661 29 320 161 21 45 33 9 18 0 17 29 24 31 2 0 6 chain 8188 chr3 198295559 + 151822049 151822185 L1MB7 1623 + 1100 1218 74438 87 3 1 9 5 0 5 10 0 7 1 0 9 chain 43932 chr3 198295559 + 151829701 151830278 L1PB1 5432 + 3454 4022 32175 94 11 3 23 9 14 145 7 0 229 0 1 59 chain 189206 chr3 198295559 + 151884685 151887320 L1P3 4156 + 3 2477 10156 197 166 0 15 0 4 30 13 12 59 1 0 283 19 20 214 0 1 144 0 1 575 7 6 285 0 1 43 4 0 139 2 1 210 0 5 54 10 0 149 0 9 8 0 1 8 chain 20319 chr3 198295559 + 151887320 151887566 L1PA7 6471 + 6208 6454 55986 246 chain 126490 chr3 198295559 + 151927972 151929469 LTR12C 1709 + 0 1709 14483 492 1 0 158 0 119 68 1 0 275 9 6 73 1 0 33 0 4 176 0 102 49 1 0 62 7 1 91 chain 175241 chr3 198295559 + 151965117 151967719 L1PBa 3878 + 104 2601 10817 26 95 47 36 1 0 24 3 1 136 1 0 152 1 0 75 39 40 121 0 1 23 10 10 24 7 8 72 31 0 6 0 30 48 6 41 8 37 0 581 3 0 10 0 1 726 57 7 243 chain 4969 chr3 198295559 + 151979420 151979479 MLT1B 390 + 105 164 85810 59 chain 12761 chr3 198295559 + 152137247 152137420 L1PB4 2604 + 2400 2572 65499 152 1 0 20 chain 25425 chr3 198295559 + 152147356 152147648 L1PA7 6471 + 6179 6469 48593 280 2 0 10 chain 127608 chr3 198295559 + 152152233 152153792 LTR12C 1709 + 0 1709 14339 376 1 0 102 1 0 95 8 7 187 4 166 176 13 9 100 17 10 105 0 1 289 0 1 85 chain 100894 chr3 198295559 + 152166927 152168061 L1PA4 6152 + 4208 5348 18197 277 0 2 810 0 4 47 chain 18115 chr3 198295559 + 152180384 152180584 L1PA2 6032 + 5831 6031 58550 200 chain 112123 chr3 198295559 + 152217121 152218545 LTR12C 1709 + 0 1709 16797 212 6 7 76 0 1 168 0 2 21 6 5 208 0 159 253 9 6 76 0 2 26 13 6 286 1 132 63 chain 24545 chr3 198295559 + 152230359 152230757 L1MA1 4479 + 3759 4151 49954 62 0 1 4 1 0 12 1 0 7 2 0 14 1 0 47 0 3 38 1 0 4 7 4 69 1 0 5 1 5 37 8 7 29 2 0 35 1 0 9 chain 27823 chr3 198295559 + 152230867 152231234 L1PA7 6471 + 6093 6470 45150 88 0 3 38 9 12 74 7 6 139 1 6 11 chain 14771 chr3 198295559 + 152250913 152251073 L1PA3long 6157 + 3718 3878 62568 160 chain 27844 chr3 198295559 + 152311912 152312212 AluYa5 310 + 4 302 45115 93 1 0 35 1 0 170 chain 4490 chr3 198295559 + 152354880 152354929 U5 65 + 2 51 88387 49 chain 476293 chr3 198295559 + 152419724 152426364 L1PA7 6471 + 411 6469 3714 133 2 1 34 12 19 56 0 1 43 8 6 184 9 5 37 4 0 361 0 1 289 0 1 312 0 3 28 333 4 100 0 1 50 0 11 72 0 4 161 18 16 32 0 1 221 11 0 34 8 0 163 0 1 300 0 3 340 1 4 31 0 2 95 0 11 25 1 2 206 2 0 269 0 1 189 1 5 203 0 4 88 1 0 4 0 1 27 0 2 341 7 0 104 0 5 137 0 4 106 0 5 44 8 16 184 0 1 69 1 6 107 300 0 122 0 3 22 0 1 82 9 11 226 1 0 63 13 14 24 24 24 64 7 1 70 2 0 5 chain 7963 chr3 198295559 + 152449282 152449382 HY1 111 + 11 111 74968 100 chain 14773 chr3 198295559 + 152460459 152460624 L1HS 6032 + 5864 6032 62562 150 0 3 15 chain 23360 chr3 198295559 + 152487727 152488051 THE1B 368 + 0 339 51839 44 0 15 103 11 10 9 0 1 18 2 0 100 0 2 37 chain 13372 chr3 198295559 + 152500541 152500834 MSTA 426 + 0 337 64507 110 22 50 10 2 0 33 54 56 32 10 26 20 chain 50262 chr3 198295559 + 152594830 152595368 L1HS 6032 + 4636 5174 29463 538 chain 22734 chr3 198295559 + 152597015 152597424 LTR7 482 + 0 482 52779 39 36 125 16 51 0 44 8 40 43 0 2 53 4 5 115 chain 284016 chr3 198295559 + 152597426 152601488 HERVH-int 3825 + 0 3825 7319 109 0 1 75 0 2 288 4 12 46 5 0 37 1 0 10 1 0 24 28 0 15 1 0 8 7 4 29 1 0 19 0 20 80 1 0 291 13 14 145 23 8 41 0 1 152 389 40 64 69 68 82 4 31 93 102 0 644 0 1 666 8 218 487 chain 7299 chr3 198295559 + 152599583 152599661 HERVH-int 3825 + 1812 1890 76671 78 chain 30935 chr3 198295559 + 152602743 152603153 LTR7 482 + 0 482 41185 69 8 46 109 8 40 43 0 2 173 chain 87892 chr3 198295559 + 152678253 152679492 HSMAR1 1287 + 0 1279 20069 135 0 18 117 0 1 278 7 8 40 26 29 110 2 0 178 20 31 22 0 12 69 5 0 63 26 27 141 chain 33396 chr3 198295559 + 152697998 152698437 MLT2A1 477 + 0 477 39179 165 7 5 38 0 2 173 0 2 16 3 39 37 chain 5866 chr3 198295559 + 152709698 152709800 MER53 195 + 0 106 81614 68 18 22 16 chain 6981 chr3 198295559 + 152710425 152710655 L1MC3 1789 + 1116 1317 77665 50 123 96 48 2 0 7 chain 3774 chr3 198295559 + 152752091 152752158 MER41A 554 + 399 466 93038 32 10 11 4 1 0 20 chain 301134 chr3 198295559 + 152764122 152768414 L1PA8 5853 + 1856 5844 6797 96 2 3 125 1 0 157 306 0 18 1 0 4 0 1 371 0 1 233 0 1 22 2 0 20 3 7 259 3 4 130 12 8 73 17 14 99 0 1 137 0 1 228 0 1 37 0 2 305 0 1 117 1 2 69 8 5 591 1 0 11 0 1 62 0 4 6 3 1 480 1 0 44 2 0 52 41 44 36 23 21 83 chain 5021 chr3 198295559 + 152784469 152784529 LTR35B 538 + 94 154 85559 60 chain 10843 chr3 198295559 + 152787946 152788234 HERV35I-int 1679 + 1277 1533 68790 41 56 38 37 1 0 45 1 0 22 42 31 17 6 7 12 2 0 6 chain 28510 chr3 198295559 + 152797266 152797579 AluYa5 310 + 0 310 44112 132 3 0 178 chain 124750 chr3 198295559 + 152846055 152847636 THE1B-int 1605 + 0 1600 14740 217 1 0 180 7 8 26 0 25 762 22 16 366 chain 7422 chr3 198295559 + 152878675 152878852 MSTA 426 + 0 200 76336 56 1 0 6 66 90 48 chain 3417 chr3 198295559 + 152913480 152913615 MER3 215 + 75 215 95919 41 79 84 15 chain 23013 chr3 198295559 + 152926899 152927249 THE1C 375 + 26 375 52338 16 4 0 100 7 11 33 10 9 155 1 0 5 4 5 15 chain 20705 chr3 198295559 + 152972451 152972704 L1PA7 6471 + 6217 6469 55491 241 1 0 11 chain 484331 chr3 198295559 + 152980701 152986401 L1PA5 6144 + 487 6143 3544 466 4 6 212 6 0 746 0 4 311 26 0 618 0 1 1228 0 1 255 0 1 5 0 4 224 0 3 62 0 13 647 1 0 327 53 11 204 1 0 29 1 4 274 chain 3841 chr3 198295559 + 152985846 152985892 L1PA5 6144 - 1378 1425 90294 4 0 1 42 chain 85699 chr3 198295559 + 152991902 152992906 LTR13 1007 + 0 1007 20503 73 2 0 231 1 0 386 9 13 251 0 2 51 chain 5691 chr3 198295559 + 153016243 153016598 LTR54B 464 + 61 464 82387 29 219 268 26 39 38 42 chain 12814 chr3 198295559 + 153110969 153111158 Tigger2 2703 + 2474 2658 65424 136 5 0 16 1 2 5 1 0 25 chain 37969 chr3 198295559 + 153114387 153114804 L1PA3long 6157 + 5741 6157 36094 87 1 0 329 chain 35289 chr3 198295559 + 153265900 153266485 L1PA7 6471 + 5881 6452 37833 255 52 53 119 73 58 86 chain 4650 chr3 198295559 + 153281877 153282142 LTR12D 1347 + 706 1196 87533 45 187 310 22 0 102 11 chain 8752 chr3 198295559 + 153339711 153339839 MER5A 189 + 35 161 73100 56 13 11 59 chain 41852 chr3 198295559 + 153340206 153340717 MER9a3 513 + 0 513 33453 19 0 1 90 0 1 147 1 0 176 4 5 74 chain 30513 chr3 198295559 + 153345869 153346197 L1PA3long 6157 + 4932 5260 41555 328 chain 37837 chr3 198295559 + 153447017 153447459 L1PA5 6144 + 5700 6144 36179 295 6 5 38 0 3 103 chain 28402 chr3 198295559 + 153463339 153463715 L1PA8 5853 + 5484 5853 44267 80 1 0 46 2 0 72 1 0 10 1 0 48 2 1 19 2 1 92 chain 62520 chr3 198295559 + 153472885 153473677 HERVL-int 5654 + 4840 5654 25746 249 7 9 208 2 0 5 5 20 97 0 3 172 1 5 46 chain 15734 chr3 198295559 + 153494694 153494962 L1PA8 5853 + 5587 5853 61369 20 27 5 10 1 4 6 0 19 27 2 1 15 0 1 49 1 0 16 2 1 92 chain 548206 chr3 198295559 + 153506403 153512405 L1PA2 6032 + 0 6029 848 2794 0 1 69 0 1 306 0 1 186 0 1 603 0 1 263 0 4 632 0 1 1074 0 17 75 chain 204143 chr3 198295559 + 153520667 153522927 L1PA3long 6157 + 3896 6157 9566 1494 0 1 766 chain 3504 chr3 198295559 + 153565737 153565777 MSTA 426 + 386 426 95208 40 chain 153513 chr3 198295559 + 153569351 153571272 L1PA7 6471 + 4514 6461 12146 9 1 0 48 11 0 7 0 1 225 0 2 414 1 2 4 1 0 172 5 19 204 1 0 89 3 0 280 0 3 309 21 43 116 chain 346093 chr3 198295559 + 153583994 153657105 L1PA4 6152 + 10 5232 5965 807 19 19 862 0 1 1253 0 2 47 0 1 209 0 3 495 67901 0 105 0 1 46 0 2 681 0 3 487 1 0 198 chain 300697 chr3 198295559 + 153640241 153644331 L1PBa1 4058 + 10 4040 6807 26 1 0 11 16 13 97 8 9 59 2 0 7 1 3 167 4 0 29 3 1 53 1 2 79 1 0 57 9 8 14 0 7 373 0 1 274 0 14 7 24 0 125 11 10 67 1 0 14 0 1 129 4 3 396 3 8 188 2 0 144 0 1 51 11 0 61 1 0 46 3 0 55 5 6 149 0 4 14 1 0 640 3 2 113 12 1 39 0 2 75 17 15 21 1 0 41 2 0 108 3 1 15 1 0 14 2 0 3 5 0 11 2 0 20 2 1 4 1 0 4 3 0 21 1 0 9 34 28 17 1 0 10 0 1 31 chain 15257 chr3 198295559 + 153646803 153647089 L1PB1 5432 + 5158 5418 61967 11 2 0 51 2 1 16 1 0 44 1 0 15 2 0 6 16 6 19 9 5 16 2 0 24 1 0 19 1 0 13 1 0 14 chain 75380 chr3 198295559 + 153650559 153651757 L1PB1 5432 + 4274 5427 22750 74 1 2 279 7 1 77 0 1 177 1 0 74 7 6 122 35 29 22 1 0 9 1 0 11 18 12 50 2 1 10 9 8 41 1 0 16 56 41 9 2 0 24 1 0 12 10 9 13 1 0 18 2 0 5 chain 9934 chr3 198295559 + 153654942 153655051 L1PA4 6152 + 3062 3171 70564 109 chain 45137 chr3 198295559 + 153655053 153655556 L1PA4 6152 + 3172 3680 31500 203 0 4 136 0 1 164 chain 8292 chr3 198295559 + 153669465 153669587 L1MA3 4352 + 3900 4241 74184 11 0 215 47 0 5 32 1 0 31 chain 2885 chr3 198295559 + 153685667 153685702 MER20B 722 + 519 554 100960 35 chain 32060 chr3 198295559 + 153709162 153709610 L1PB 1623 + 1035 1469 40297 266 25 9 88 0 4 48 6 4 15 chain 8569 chr3 198295559 + 153736718 153736850 L1P3b 214 + 0 128 73521 23 16 11 13 0 1 80 chain 135261 chr3 198295559 + 153736875 153738548 L1PA8A 6298 + 4574 6283 13513 123 0 14 198 2 6 68 1 0 225 4 3 4 0 1 136 0 1 140 0 7 70 1 4 251 4 5 223 1 0 124 1 9 97 chain 556656 chr3 198295559 + 153796804 153802956 L1PA3long 6157 + 5 6157 319 987 0 6 1017 3 2 3524 5 0 616 chain 186496 chr3 198295559 + 153823354 153825546 L1P1 4361 + 4 2251 10275 201 1 0 25 0 1 5 2 1 841 0 1 406 1 0 257 0 55 205 1 2 247 chain 29140 chr3 198295559 + 153831834 153832147 AluYb8 318 + 0 309 43131 118 4 0 191 chain 327507 chr3 198295559 + 153914132 153918758 L1PA11 4918 + 160 4473 6257 20 1 0 33 2 0 3 1 0 78 0 4 164 7 6 29 4 5 31 0 1 7 263 13 400 1 0 15 1 7 368 1 3 61 0 1 54 0 3 194 13 0 155 3 0 200 2 0 73 0 5 94 6 10 19 0 4 13 0 1 4 0 3 47 3 19 79 1 4 157 1 0 42 0 4 122 10 7 36 1 0 243 0 1 106 2 1 37 0 2 183 1 0 99 0 3 89 0 4 14 0 1 441 0 1 247 99 7 83 15 8 60 7 6 13 2 0 66 chain 6772 chr3 198295559 + 153918433 153918512 L1PA11 4918 + 4240 4319 77210 79 chain 162009 chr3 198295559 + 153932585 153934407 L1PA4 6152 + 4316 6143 11613 967 0 4 714 0 1 141 chain 96812 chr3 198295559 + 153949776 153950879 L1P2 5180 + 2010 3109 18675 317 4 0 782 chain 150452 chr3 198295559 + 153964336 153966038 L1PA4 6152 + 4438 6140 12319 668 4 4 191 1 0 678 8 9 152 chain 380172 chr3 198295559 + 153980689 153994535 L1PB1 5432 + 80 5417 5480 76 1 0 251 3 0 116 32 31 158 3 17 360 0 1 8 0 1 38 1 0 7 1 0 15 1 2 14 2 1 71 0 4 144 1 0 4 11 0 202 0 5 250 0 3 298 0 1 171 0 1 66 0 1 98 9 8 9 0 1 149 0 13 132 6135 0 35 3 1 399 1 2 472 35 32 62 0 3 187 4 0 51 1 0 21 0 1 109 0 1 4 1 0 441 2 0 65 2287 0 119 5 3 46 0 2 129 5 6 5 1 0 34 9 10 5 1 0 47 3 6 9 76 0 14 7 6 13 16 11 11 3 1 50 2 1 11 6 5 44 1 0 14 1 0 5 2 0 13 9 0 14 8 5 14 2 0 24 1 0 21 1 0 13 1 0 9 1 0 4 chain 37907 chr3 198295559 + 153998529 153998970 L1P1 4361 + 3903 4341 36133 247 1 0 155 1 0 23 2 1 12 chain 68573 chr3 198295559 + 154000000 154000771 L1PA3long 6157 + 5386 6157 24317 771 chain 39947 chr3 198295559 + 154062415 154063045 LTR9B 643 + 0 643 34700 67 3 6 30 0 8 76 18 21 13 0 1 111 0 1 77 54 51 117 26 25 5 0 1 33 chain 85421 chr3 198295559 + 154067347 154068369 MER11C 1089 + 0 1024 20547 464 1 0 127 1 2 148 2 3 138 0 1 141 chain 75349 chr3 198295559 + 154068696 154069538 L1PA4 6152 + 5297 6141 22757 618 0 1 218 0 1 6 chain 118159 chr3 198295559 + 154087854 154089524 LTR12C 1709 + 0 1709 15858 269 1 26 43 0 43 30 0 1 6 4 3 42 10 8 265 82 0 101 1 41 193 0 47 90 27 20 10 30 6 377 5 4 84 chain 5119 chr3 198295559 + 154088524 154088606 LTR12C 1709 + 814 895 53699 23 1 0 58 chain 4281 chr3 198295559 + 154094911 154095041 L1MC4 1079 + 575 707 89620 23 70 72 37 chain 27286 chr3 198295559 + 154198106 154198497 L1PB2 3958 + 3434 3821 45847 5 2 0 12 2 0 21 8 13 132 1 0 64 2 1 71 2 0 21 5 4 43 chain 3750 chr3 198295559 + 154220980 154221028 MLT1C 463 + 246 293 93238 35 1 0 12 chain 496866 chr3 198295559 + 154262605 154268666 L1PA5 6144 + 1 6082 3238 57 0 3 59 0 14 261 12 23 9 10 0 391 0 17 83 0 4 20 35 10 69 0 2 142 13 4 64 1 2 191 0 1 125 0 2 65 9 10 80 12 8 27 0 1 171 0 1 21 0 1 4 0 1 369 2 1 836 0 4 16 1 0 195 0 4 140 1 0 199 3 5 144 0 1 25 0 2 608 1 0 135 1 0 198 1 3 4 1 0 550 2 1 698 chain 29262 chr3 198295559 + 154290852 154291161 AluYa5 310 + 0 308 42947 132 1 0 176 chain 7716 chr3 198295559 + 154329714 154329807 U13 108 + 0 93 75575 93 chain 176881 chr3 198295559 + 154356314 154358289 L1PA4 6152 + 4122 6140 10731 1199 3 46 773 chain 47460 chr3 198295559 + 154367103 154367714 LTR30 714 + 0 630 30486 238 0 2 9 0 5 146 0 1 42 7 18 169 chain 36330 chr3 198295559 + 154368435 154369427 HERV30-int 1034 + 137 786 37188 10 24 0 13 6 0 35 6 5 61 33 0 45 14 9 39 12 0 34 0 1 43 1 0 89 20 5 36 34 0 19 37 32 12 178 61 49 39 0 24 52 0 27 chain 30999 chr3 198295559 + 154372142 154372532 LTR30 714 + 0 398 41124 166 0 1 68 1 0 6 5 13 144 chain 79424 chr3 198295559 + 154417953 154418825 L1PA3long 6157 + 5285 6157 21761 872 chain 18685 chr3 198295559 + 154474465 154474727 THE1B 368 + 0 306 57914 64 0 3 102 1 0 14 14 56 67 chain 66319 chr3 198295559 + 154480273 154481042 L1PA3long 6157 + 5309 6152 24866 163 9 83 597 chain 449309 chr3 198295559 + 154487107 154492891 L1PA8 5853 + 50 5853 4404 22 2 0 10 1 0 13 54 13 194 19 7 175 0 1 76 1 0 177 0 2 404 0 1 137 0 3 99 3 4 230 0 1 5 8 7 251 9 10 105 0 8 13 4 0 34 13 28 10 0 3 243 0 4 141 0 4 41 0 1 170 0 2 129 0 1 247 0 1 144 17 7 165 0 1 192 0 1 8 0 2 51 0 1 394 0 3 294 2 0 22 1 0 49 0 1 326 0 1 133 1 2 108 11 27 73 1 3 137 0 23 317 1 0 45 7 5 67 1 0 11 1 0 50 2 1 19 3 2 91 chain 45024 chr3 198295559 + 154503791 154504321 L1PA7 6471 + 5930 6460 31567 380 2 0 140 0 2 8 chain 29369 chr3 198295559 + 154512128 154512440 AluYa5 310 + 0 310 42787 123 2 0 187 chain 7979 chr3 198295559 + 154569026 154569113 L1PA8 5853 + 5251 5338 74926 87 chain 30716 chr3 198295559 + 154569114 154569498 L1PA8 5853 + 5338 5716 41375 226 1 0 45 2 0 68 4 2 21 1 0 16 chain 5585 chr3 198295559 + 154569530 154569609 L1PA8 5853 + 5767 5847 82875 13 6 7 60 chain 488495 chr3 198295559 + 154619379 154625051 L1PA5 6144 + 3 6135 3455 110 0 1 511 11 22 180 18 1 105 0 1 229 1 0 1692 0 2 652 5 4 168 0 1 806 0 461 344 0 2 82 1 0 307 7 7 139 4 5 300 chain 227560 chr3 198295559 + 154647537 154650272 L1PA7 6471 + 3667 6364 8825 162 1 0 221 26 1 79 0 1 197 17 16 196 22 0 729 0 6 339 0 3 87 1 2 658 chain 13380 chr3 198295559 + 154665640 154665992 THE1B 368 + 0 368 64495 46 1 7 10 156 167 10 1 0 128 chain 6096 chr3 198295559 + 154674028 154674100 L1PA8 5853 + 5449 5521 80746 72 chain 3597 chr3 198295559 + 154674100 154674140 L1PA8 5853 + 5524 5564 94448 40 chain 19365 chr3 198295559 + 154674141 154674450 L1PA8 5853 + 5564 5853 57166 45 2 0 69 12 10 52 2 1 22 1 0 15 23 9 66 chain 2760 chr3 198295559 + 154737690 154737726 L1PA8 5853 + 5640 5678 101908 17 0 2 19 chain 2820 chr3 198295559 + 154737741 154737793 L1PA8 5853 + 5687 5735 101522 14 12 8 26 chain 9405 chr3 198295559 + 154737793 154737912 L1PA8 5853 + 5736 5853 71692 8 1 0 16 1 0 93 chain 2961 chr3 198295559 + 154810100 154810136 L1PA8 5853 + 5572 5607 100274 28 1 0 7 chain 8499 chr3 198295559 + 154810142 154810273 L1PA8 5853 + 5611 5740 73680 66 1 0 10 18 17 36 chain 9177 chr3 198295559 + 154810275 154810388 L1PA8 5853 + 5741 5853 72169 19 1 0 93 chain 202264 chr3 198295559 + 154854491 154856758 L1PA5 6144 + 2554 4822 9627 114 0 1 2153 chain 15665 chr3 198295559 + 154873692 154873956 MER1B 344 + 41 304 61445 43 18 19 114 4 0 44 1 0 4 17 20 19 chain 467577 chr3 198295559 + 154875064 154881148 L1PA7 6471 + 211 6469 3919 118 41 211 71 3 4 93 17 27 184 33 36 204 0 2 141 58 59 121 0 1 275 5 6 841 6 7 28 0 1 103 0 3 126 9 15 166 0 1 97 0 2 222 0 1 60 6 0 44 19 16 56 1 13 269 0 1 166 1 0 239 47 19 225 0 1 178 0 4 321 6 7 361 2 1 263 5 0 141 3 1 696 3 0 10 chain 29558 chr3 198295559 + 154894863 154895213 L1PA7 6471 + 4199 4563 42541 110 0 14 240 chain 28888 chr3 198295559 + 154895221 154895569 L1PA7 6471 + 4572 4925 43499 102 0 4 123 0 1 123 chain 60116 chr3 198295559 + 154895569 154896280 L1PA7 6471 + 4948 5661 26338 343 0 2 368 chain 67504 chr3 198295559 + 154896280 154897068 L1PA7 6471 + 5675 6467 24567 600 1 5 187 chain 345803 chr3 198295559 + 154911095 154914801 L1HS 6032 + 2087 6029 5970 2896 3 239 807 chain 15677 chr3 198295559 + 154914989 154915274 L1MA3 4352 + 3999 4247 61427 23 2 0 71 58 27 115 4 0 12 chain 10428 chr3 198295559 + 154944955 154945154 L1MA5A 2387 + 275 505 69559 23 42 72 26 8 9 100 chain 509618 chr3 198295559 + 154945164 154951291 L1PA6 6164 + 0 6145 2790 459 20 15 572 0 8 134 0 3 537 1 0 131 0 5 94 2 1 374 0 1 46 0 7 841 1 6 460 1 0 3 1 0 333 0 1 647 0 1 617 2 0 19 1 0 685 20 19 126 chain 52030 chr3 198295559 + 154978075 154978668 HERV17-int 4347 + 3754 4347 28868 593 chain 26533 chr3 198295559 + 154978983 154979301 LTR17 781 + 0 326 46925 111 2 1 7 0 9 198 chain 263648 chr3 198295559 + 154983594 154986613 L1PA5 6144 + 2860 5867 7864 495 3 4 1263 1 0 134 0 1 882 13 0 228 chain 35383 chr3 198295559 + 155003117 155003905 THE1D-int 1627 + 0 475 37781 398 334 21 56 chain 45260 chr3 198295559 + 155003905 155004420 MER9a1 513 + 0 513 31443 445 2 0 68 chain 61275 chr3 198295559 + 155056806 155057476 L1PA3long 6157 + 4856 5526 26042 670 chain 49661 chr3 198295559 + 155099951 155100503 L1PA5 6144 + 5033 5585 29695 552 chain 12198 chr3 198295559 + 155231598 155231740 L1PA6 6164 + 6020 6162 66476 142 chain 46206 chr3 198295559 + 155266307 155267063 L1PB3 3668 + 2877 3612 30958 108 0 2 18 4 5 72 0 2 53 0 2 58 17 7 15 12 11 60 1 0 98 4 3 87 20 4 17 1 0 4 2 1 16 0 1 7 3 1 29 3 11 13 1 0 10 0 1 4 6 2 13 chain 213919 chr3 198295559 + 155271140 155274434 L1PBa 3878 + 91 3008 9204 9 2 1 44 78 31 37 1 0 24 27 44 108 16 10 125 1 0 554 0 2 45 1 2 149 3 4 241 0 3 37 15 6 54 0 2 185 0 3 112 327 0 169 25 3 362 0 1 5 1 0 244 0 1 4 0 2 8 1 3 75 0 3 205 chain 80328 chr3 198295559 + 155280798 155281980 L1PB 1623 + 367 1501 21566 31 2 1 88 2 15 10 0 1 4 1 0 66 19 8 185 5 9 54 0 1 47 47 0 32 0 1 385 1 0 90 1 0 51 10 8 30 1 0 4 3 0 13 chain 22177 chr3 198295559 + 155282188 155282478 MER51B 395 + 89 386 53598 96 1 0 47 1 0 13 1 0 61 0 10 70 chain 24925 chr3 198295559 + 155305231 155305531 L1PA7 6471 + 6173 6470 49389 136 1 0 156 2 0 5 chain 101682 chr3 198295559 + 155324173 155325530 MER61-int 3695 + 2322 3688 18103 219 0 3 10 0 3 56 1 0 152 8 13 77 2 1 7 1 0 37 1 0 38 7 6 44 0 8 138 0 9 8 2 0 284 19 0 4 0 1 135 14 20 93 chain 56629 chr3 198295559 + 155344224 155344868 L1PA7 6471 + 5824 6468 27378 644 chain 205688 chr3 198295559 + 155438208 155440467 L1PA2 6032 + 3773 6032 9512 1328 1 0 4 0 1 926 chain 37459 chr3 198295559 + 155467590 155469055 L1MA1 4479 + 228 1689 8101 20 1 5 14 13 11 80 2 0 313 5 8 136 0 5 85 1 0 140 7 15 12 16 20 8 0 2 13 4 6 251 26 6 6 7 0 305 chain 554597 chr3 198295559 + 155469062 155475088 L1PA2 6032 + 0 6032 437 4226 0 4 871 1 0 4 0 1 910 0 2 14 chain 63463 chr3 198295559 + 155475101 155477583 L1MA1 4479 + 1689 4184 8101 54 5 7 56 10 11 31 16 10 150 0 1 109 14 15 40 0 1 232 1 0 103 2 1 5 0 1 77 0 2 125 6 12 39 2 0 33 1 0 57 7 18 68 1 0 11 2 0 27 9 7 166 9 7 10 4 0 76 1 0 38 8 42 52 8 6 129 2 0 196 1 0 25 2 0 16 10 9 52 27 24 19 1 0 21 27 29 18 0 3 17 17 13 10 0 1 107 1 0 24 5 3 35 2 1 10 1 0 11 3 1 9 7 0 12 chain 33961 chr3 198295559 + 155532843 155533265 THE1D-int 1627 + 12 537 38737 135 0 1 197 1 103 89 chain 559646 chr3 198295559 + 155541896 155548049 L1PA3long 6157 + 1 6157 181 36 1 0 2058 0 1 60 0 1 1787 1 2 1283 1 0 4 0 1 739 0 1 183 chain 18874 chr3 198295559 + 155612356 155612628 L1PB1 5432 + 2331 2592 57675 119 7 1 34 15 4 9 0 5 12 0 1 76 chain 457806 chr3 198295559 + 155620664 155626194 L1PA7 6471 + 703 6278 4188 451 0 1 238 0 3 767 0 1 407 1 0 70 3 0 63 0 4 478 0 8 309 3 1 152 0 1 166 10 17 651 0 1 171 0 8 284 1 0 23 2 0 5 0 2 27 1 2 556 0 13 31 0 3 76 5 7 98 5 1 196 27 29 112 0 1 141 chain 3425 chr3 198295559 + 155661092 155661129 tRNA-Glu-GAG_ 72 + 0 37 95865 37 chain 30023 chr3 198295559 + 155693184 155693499 AluYb8 318 + 1 316 42029 315 chain 19507 chr3 198295559 + 155719311 155719522 L1PA5 6144 + 5929 6140 57014 211 chain 13597 chr3 198295559 + 155774582 155774784 MER30 238 + 25 238 64169 73 11 19 36 1 7 30 3 0 48 chain 3076 chr3 198295559 + 155783113 155783148 Tigger4b 360 + 323 358 99023 35 chain 100048 chr3 198295559 + 155795498 155799406 L1MA3 4352 + 874 3866 18294 175 2469 1550 14 4 0 215 0 4 555 2 0 201 7 12 5 0 1 10 1 0 13 3 2 91 5 7 6 1 0 131 chain 26672 chr3 198295559 + 155858699 155858981 AluYa5 310 + 0 284 46727 6 0 2 276 chain 12478 chr3 198295559 + 155863124 155863296 LTR8 732 + 558 732 66021 44 3 0 6 0 3 60 1 3 58 chain 124205 chr3 198295559 + 155929342 155930688 L1PA2 6032 + 3845 5196 14812 671 0 5 675 chain 28018 chr3 198295559 + 156022510 156022822 L1PA5 6144 + 5828 6140 44835 312 chain 100681 chr3 198295559 + 156041137 156042550 LTR12C 1709 + 0 1709 18219 24 5 6 247 4 0 9 5 10 5 1 0 37 7 50 76 2 0 5 3 4 101 1 12 64 0 278 184 1 0 5 3 1 97 44 13 162 1 0 4 0 1 107 2 1 124 1 0 82 chain 5728 chr3 198295559 + 156052501 156052587 LTR12C 1709 + 1033 1203 82231 35 4 88 47 chain 10745 chr3 198295559 + 156052642 156052825 LTR12C 1709 + 654 877 68964 95 2 17 7 15 0 31 6 46 27 chain 114165 chr3 198295559 + 156072987 156074497 LTR12C 1709 + 0 1709 16531 24 10 19 203 39 40 52 8 51 75 0 1 156 8 9 34 3 0 35 0 159 254 1 0 5 3 1 106 11 4 276 1 0 54 1 0 69 1 0 65 0 1 16 chain 76388 chr3 198295559 + 156080773 156081691 L1PA7 6471 + 5528 6457 22468 93 0 3 76 0 2 457 1 7 291 chain 110364 chr3 198295559 + 156099285 156100661 LTR12C 1709 + 0 1709 17026 277 15 16 45 0 43 83 0 1 4 1 0 181 0 278 108 2 8 68 1 0 4 4 2 85 0 5 16 0 4 51 2 3 279 1 0 66 1 0 82 chain 29148 chr3 198295559 + 156164995 156165305 AluYa5 310 + 0 309 43123 19 1 0 290 chain 181155 chr3 198295559 + 156221336 156225645 L1PBa 3878 + 1242 3748 10543 74 0 3 17 1 8 59 309 0 42 20 16 6 0 4 147 9 0 87 1 0 53 1 3 62 4 1 106 0 3 251 2 0 414 1515 23 89 6 1 80 1 6 152 38 41 58 0 1 162 1 0 4 0 1 4 3 0 45 0 1 11 2 1 61 0 1 128 1 0 247 2 1 22 2 0 10 chain 4054 chr3 198295559 + 156226620 156226687 L1PB1 5432 + 5358 5422 91055 12 1 0 22 1 0 11 2 1 18 chain 58266 chr3 198295559 + 156231208 156232029 MER4E 760 + 0 760 26879 23 0 1 127 11 13 102 84 9 13 0 4 371 0 5 82 0 2 8 chain 14367 chr3 198295559 + 156401964 156402159 L1PA6 6164 + 5969 6162 63087 16 2 0 5 5 7 157 2 0 8 chain 3047 chr3 198295559 + 156428534 156428566 MLT2B4 540 + 506 538 99358 32 chain 11825 chr3 198295559 + 156480378 156480544 L1PA8 5853 + 5689 5853 67159 51 7 6 14 1 0 93 chain 16770 chr3 198295559 + 156560300 156560535 THE1A 353 + 0 234 60068 83 1 2 25 1 0 81 8 7 36 chain 116908 chr3 198295559 + 156560956 156562514 THE1A-int 1579 + 0 1577 16071 9 7 0 7 0 12 130 4 0 26 2 8 68 7 9 233 2 1 126 16 16 144 0 1 35 10 6 92 8 9 72 0 1 464 1 13 95 chain 121583 chr3 198295559 + 156567430 156569009 THE1A-int 1579 + 0 1579 15243 378 0 1 104 0 1 4 2 0 5 4 5 184 0 1 146 6 2 65 5 6 82 3 4 233 0 13 9 12 0 72 1 0 264 chain 27272 chr3 198295559 + 156569010 156569364 THE1A 353 + 1 353 45863 83 0 1 24 2 1 168 1 0 67 1 0 8 chain 6240 chr3 198295559 + 156585570 156585663 Tigger4b 360 + 0 93 80207 20 7 0 10 0 7 56 chain 95612 chr3 198295559 + 156596434 156597801 L1PB1 5432 + 4092 5430 18832 21 0 3 203 0 2 85 0 1 219 5 4 182 5 3 250 0 1 37 3 2 9 3 0 20 1 0 15 14 9 11 3 1 50 19 17 42 0 2 15 3 0 7 16 8 16 3 1 4 1 0 14 3 1 23 1 0 20 4 3 8 1 0 19 1 0 4 1 0 6 chain 4092 chr3 198295559 + 156629319 156629380 MER5A 189 + 36 159 90837 9 0 63 8 1 0 43 chain 67029 chr3 198295559 + 156736738 156737532 L1PA7 6471 + 5660 6461 24699 36 7 8 20 8 11 248 0 1 244 0 2 231 chain 3655 chr3 198295559 + 156737619 156737760 MLT1F 544 + 2 143 93957 29 33 32 20 45 46 14 chain 118135 chr3 198295559 + 156740395 156741772 LTR12C 1709 + 0 1709 15866 445 0 1 204 0 278 143 0 47 106 0 4 35 0 2 444 chain 30623 chr3 198295559 + 156789164 156789599 MLT2A1 477 + 0 473 41447 102 5 0 40 0 1 24 2 6 151 1 0 11 1 0 40 13 53 45 chain 7154 chr3 198295559 + 156791245 156791329 LTR39 781 + 45 129 77085 84 chain 259630 chr3 198295559 + 156880310 156883161 L1PA3long 6157 + 3304 6156 7982 640 0 1 2211 chain 25452 chr3 198295559 + 156883181 156883487 THE1B-int 1605 + 1293 1598 48553 51 1 0 47 1 0 196 0 1 10 chain 25228 chr3 198295559 + 156896431 156896919 L1PA15 4387 + 3890 4366 48903 42 1 0 52 13 15 62 4 5 38 1 0 22 0 4 19 7 12 24 1 0 9 15 7 16 1 0 50 12 9 13 7 6 19 3 1 12 6 1 28 1 0 10 chain 486213 chr3 198295559 + 156966142 156971865 L1PA4 6152 + 0 5515 3508 1156 0 3 1227 0 4 300 4 0 438 0 5 807 0 1 237 221 0 173 0 4 1160 chain 25936 chr3 198295559 + 156998873 156999239 THE1C 375 + 0 364 47811 87 5 6 93 0 1 13 2 1 27 24 21 115 chain 4824 chr3 198295559 + 157000777 157000838 THE1C 375 + 0 59 86577 14 2 0 45 chain 9595 chr3 198295559 + 157000864 157000990 THE1C 375 + 86 212 71275 126 chain 8483 chr3 198295559 + 157001025 157001142 THE1C 375 + 243 355 73713 14 5 1 21 1 0 76 chain 3232 chr3 198295559 + 157027144 157027229 MER63B 433 + 339 426 97653 22 13 20 12 15 10 23 chain 7297 chr3 198295559 + 157153547 157153635 HY4 93 + 0 90 76678 78 0 2 10 chain 2671 chr3 198295559 + 157194385 157194428 MER4C 627 + 569 611 102596 14 2 1 27 chain 539136 chr3 198295559 + 157340046 157346169 L1PA5 6144 + 3 6125 1393 429 11 9 592 1 0 1280 1 0 311 4 5 34 1 0 586 0 1 1247 0 3 392 1 0 405 10 8 566 0 1 122 0 1 130 chain 32060 chr3 198295559 + 157418479 157418906 L1PA10 4194 + 3733 4158 40301 224 1 0 102 0 3 54 4 1 29 2 1 11 chain 27053 chr3 198295559 + 157424016 157424371 THE1A 353 + 0 353 46196 15 2 0 32 0 1 48 1 0 257 chain 112805 chr3 198295559 + 157424371 157425818 THE1A-int 1579 + 0 1573 16704 363 0 1 106 1 2 545 0 107 80 0 5 111 3 4 46 0 11 192 chain 26673 chr3 198295559 + 157425824 157426182 THE1A 353 + 0 353 46724 15 2 0 32 0 1 48 1 0 92 6 3 162 chain 11631 chr3 198295559 + 157481290 157481433 L1P4 1494 + 667 810 67512 143 chain 91922 chr3 198295559 + 157510215 157511392 L1PA8 5853 + 4681 5845 19353 56 0 2 270 0 2 76 0 1 213 21 0 14 0 9 160 0 1 77 1 0 47 2 0 69 2 1 8 2 1 52 2 1 18 2 1 85 chain 3989 chr3 198295559 + 157511940 157512018 L1ME1 1623 + 1446 1522 91525 39 19 17 20 chain 12117 chr3 198295559 + 157579060 157579227 MLT2A1 477 + 0 181 66641 33 1 18 117 5 2 11 chain 4768 chr3 198295559 + 157588326 157588383 MLT2A1 477 + 421 477 86873 5 1 0 51 chain 27905 chr3 198295559 + 157610875 157611251 THE1C 375 + 0 375 45029 172 1 0 4 2 0 35 9 12 126 1 0 26 chain 82956 chr3 198295559 + 157673137 157674110 L1PA7 6471 + 5495 6469 21025 119 0 3 250 0 1 584 1 0 7 2 0 10 chain 521839 chr3 198295559 + 157685205 157691139 L1PA4 6152 + 0 5969 2188 580 1 0 877 0 1 1318 0 4 734 1 2 175 0 2 458 0 3 945 27 53 220 1 0 597 chain 3915 chr3 198295559 + 157706882 157706933 MER5A1 166 + 114 165 92022 51 chain 547819 chr3 198295559 + 157724697 157730723 L1PA2 6032 + 3 6030 874 69 1 2 183 1 0 1941 1 0 142 0 1 228 1 0 1489 0 1 1138 1 2 831 chain 4900 chr3 198295559 + 157751971 157752031 LTR16A1 462 + 391 451 86154 60 chain 107579 chr3 198295559 + 157778624 157780220 L1PB2 3958 + 2204 3827 17379 26 1 0 12 1 5 135 0 1 38 9 10 42 10 4 4 1 0 17 0 1 126 4 12 283 7 6 15 1 0 53 12 16 128 4 3 166 2 0 56 1 0 14 10 5 51 9 7 11 4 0 94 1 0 9 5 13 48 1 0 66 5 4 28 0 1 35 5 33 4 1 0 41 chain 30291 chr3 198295559 + 157839436 157839769 L1PA3long 6157 + 5824 6157 41770 333 chain 540846 chr3 198295559 + 157879333 157885499 L1PA4 6152 + 6 6151 1291 511 4 1 62 1 0 187 28 2 270 0 1 422 1 2 1839 0 1 197 6 8 182 0 2 1607 0 2 849 chain 26939 chr3 198295559 + 157895270 157895562 L1PA2 6032 + 5726 6018 46354 292 chain 539849 chr3 198295559 + 157896819 157902837 L1PA3long 6157 + 2 6157 1349 150 0 1 420 0 4 200 1 129 139 0 1 2914 3 0 283 1 0 1067 0 4 828 0 3 12 chain 104083 chr3 198295559 + 157950698 157951878 L1PA5 6144 + 4786 5970 17811 508 0 2 271 0 2 401 chain 40031 chr3 198295559 + 157975297 157975734 L1PA3long 6157 + 5720 6157 34632 437 chain 22113 chr3 198295559 + 157987694 157987991 L1PREC2 3366 + 2069 2358 53681 242 12 4 43 chain 38009 chr3 198295559 + 157988003 157988428 L1PA5 6144 + 5719 6144 36065 425 chain 232440 chr3 198295559 + 157992725 157995577 L1PA6 6164 + 3273 6152 8681 5 2 0 177 0 3 65 0 1 152 0 2 25 1 0 13 0 6 366 6 0 83 2 1 153 0 15 9 13 17 411 37 37 200 1 0 298 0 4 88 0 1 295 0 6 40 7 3 403 chain 9935 chr3 198295559 + 157999647 157999948 L1PREC2 3366 + 2788 3040 70563 18 2 1 20 7 0 23 1 0 4 3 0 7 40 29 10 2 0 5 4 1 15 3 1 29 4 1 10 24 10 37 3 1 30 chain 123117 chr3 198295559 + 158003460 158004979 L1PA7 6471 + 4933 6460 15001 17 1 0 100 0 1 427 0 3 142 0 7 43 28 27 231 0 3 116 4 0 410 chain 563319 chr3 198295559 + 158019676 158025704 L1HS 6032 + 0 6028 126 6028 chain 4417 chr3 198295559 + 158033820 158033868 L1PBb 2709 + 1812 1860 88796 48 chain 530775 chr3 198295559 + 158034153 158040603 L1PA5 6144 + 3 6139 1799 117 1 15 14 16 2 894 2 1 362 1 6 32 3 2 898 1 0 824 1 0 31 0 1 2091 0 1 178 316 0 419 1 0 248 chain 28549 chr3 198295559 + 158039629 158039935 AluYb8 318 + 0 305 44038 209 1 0 96 chain 248136 chr3 198295559 + 158065631 158068983 L1P2 5180 + 1226 4634 8285 381 1 0 124 0 290 14 4 5 550 0 2 65 0 1 128 0 4 16 0 1 355 1 3 7 2 0 11 1 0 114 0 1 481 245 0 159 4 6 391 1 2 297 chain 7844 chr3 198295559 + 158068983 158069070 L1PA3long 6157 + 5918 6005 75269 87 chain 12906 chr3 198295559 + 158069070 158069211 L1PA3long 6157 + 6016 6157 65241 141 chain 3130 chr3 198295559 + 158120475 158120512 MADE1 96 + 11 48 98543 37 chain 4964 chr3 198295559 + 158158207 158158361 MER8 282 + 0 229 85828 29 53 126 19 17 19 36 chain 153007 chr3 198295559 + 158175996 158177785 L1PA6 6164 + 4348 6149 12177 430 0 1 114 0 5 239 0 1 180 0 4 619 0 1 29 2 1 4 1 0 143 0 2 28 chain 8899 chr3 198295559 + 158213970 158214194 MER2 342 + 29 293 72786 27 64 82 8 0 3 38 0 3 37 20 36 30 chain 140424 chr3 198295559 + 158237772 158239729 L1PA6 6164 + 4076 6162 13064 185 18 0 283 0 1 772 0 7 210 0 1 170 0 4 99 11 143 200 0 2 9 chain 8335 chr3 198295559 + 158318070 158318171 MER30 238 + 137 238 74072 101 chain 21189 chr3 198295559 + 158319113 158319478 THE1D 372 + 0 372 54903 129 3 0 11 98 108 124 chain 15207 chr3 198295559 + 158340042 158340252 THE1A 353 + 0 209 62032 25 1 2 82 2 1 88 1 0 11 chain 120660 chr3 198295559 + 158340704 158342244 THE1A-int 1579 + 0 1573 15417 96 11 21 208 0 19 149 0 3 175 7 8 134 0 3 6 4 1 349 0 1 162 1 0 238 chain 27589 chr3 198295559 + 158342249 158342603 THE1A 353 + 0 353 45467 26 0 1 83 1 0 88 1 0 155 chain 14925 chr3 198295559 + 158412866 158413057 L1PA10 4194 + 3962 4150 62361 153 9 6 29 chain 205642 chr3 198295559 + 158437420 158439818 L1PA6 6164 + 3759 6159 9516 161 0 1 85 5 0 1203 0 1 20 6 7 75 0 4 843 chain 12387 chr3 198295559 + 158439975 158440132 L1PA8 5853 + 5698 5853 66163 45 1 0 17 1 0 93 chain 131388 chr3 198295559 + 158444132 158445644 L1PA5 6144 + 4607 6124 13880 598 4 6 5 1 0 81 0 4 823 chain 23156 chr3 198295559 + 158472920 158473179 L1PA5 6144 + 5390 5649 52132 259 chain 43968 chr3 198295559 + 158473179 158473661 L1PA5 6144 + 5650 6132 32149 482 chain 9038 chr3 198295559 + 158530808 158530905 L1HS 6032 + 5933 6030 72477 97 chain 9011 chr3 198295559 + 158542125 158542247 L1MB8 1703 + 1366 1486 72533 57 2 1 11 1 0 51 chain 117871 chr3 198295559 + 158555469 158557046 THE1B-int 1605 + 0 1592 15905 113 0 3 31 0 1 229 0 1 54 14 40 210 16 15 9 2 1 41 17 18 368 7 16 25 1 2 226 0 1 95 26 0 93 chain 23523 chr3 198295559 + 158559350 158559630 THE1D-int 1627 + 44 325 51548 23 0 1 257 chain 6828 chr3 198295559 + 158581248 158581768 L1MCa 1829 + 213 695 78207 47 356 313 44 49 54 24 chain 17855 chr3 198295559 + 158585110 158585524 MSTB1 431 + 35 431 58821 20 9 21 9 10 0 16 2 0 35 21 8 27 6 0 35 6 9 53 73 72 79 1 0 12 chain 7439 chr3 198295559 + 158617407 158617504 MER4-int 2692 + 645 735 76278 73 7 0 17 chain 2993 chr3 198295559 + 158617508 158617543 THE1C 375 + 4 39 99928 35 chain 559641 chr3 198295559 + 158634523 158640540 L1PA2 6032 + 12 6029 182 6017 chain 16361 chr3 198295559 + 158677257 158677486 Tigger1 2417 + 725 960 60559 134 0 2 53 14 18 28 chain 2690 chr3 198295559 + 158786996 158787127 L1ME1 1623 + 1134 1279 102412 19 85 99 27 chain 69267 chr3 198295559 + 158817083 158817843 L1PA3long 6157 + 3979 4739 24167 760 chain 12785 chr3 198295559 + 158890925 158891247 L1PB1 5432 + 5105 5383 65462 9 4 0 33 30 23 50 2 1 16 1 0 44 13 0 15 3 0 6 43 31 13 2 0 22 5 4 11 chain 387458 chr3 198295559 + 158937203 158942564 L1PB1 5432 + 19 5416 5363 174 26 17 82 0 1 25 13 15 73 1 0 139 2 0 42 0 4 13 0 7 82 0 4 58 0 4 73 11 17 325 0 3 26 4 5 20 0 2 17 0 4 151 7 2 34 8 11 62 1 0 137 6 7 15 4 6 28 1 0 142 8 12 56 1 8 150 0 4 105 1 2 64 2 0 5 6 8 231 1 2 106 0 4 237 1 2 88 0 4 146 10 13 5 0 1 61 1 0 85 0 3 202 1 2 34 0 4 239 1 3 393 0 1 13 0 18 12 1 0 100 26 0 48 1 0 18 0 5 112 1 0 169 0 2 116 8 3 61 7 10 283 0 2 5 1 0 9 4 3 23 1 0 8 2 0 11 5 1 9 2 0 10 0 2 41 15 17 44 1 0 7 33 20 14 7 5 5 1 0 14 2 0 24 1 0 21 2 5 8 1 0 12 chain 32103 chr3 198295559 + 159022116 159022556 LTR14B 630 + 0 630 40270 55 0 149 72 0 28 103 8 18 115 11 14 76 chain 27954 chr3 198295559 + 159050933 159051288 THE1A 353 + 0 353 44938 110 1 0 92 1 0 151 chain 119646 chr3 198295559 + 159051288 159052798 THE1A-int 1579 + 0 1565 15583 113 7 10 252 0 1 97 9 12 124 10 30 46 0 1 25 1 0 11 0 1 317 1 10 104 4 5 231 0 11 10 0 1 31 0 5 117 chain 28621 chr3 198295559 + 159052812 159053167 THE1A 353 + 0 353 43916 108 1 0 94 1 0 151 chain 20596 chr3 198295559 + 159115784 159116082 L1PA7 6471 + 6185 6470 55640 91 23 12 20 5 6 4 1 0 143 2 0 9 chain 84963 chr3 198295559 + 159162590 159163527 L1PA3long 6157 + 3161 4098 20627 937 chain 15409 chr3 198295559 + 159261388 159261712 THE1C 375 + 0 375 61773 13 2 0 34 0 6 17 21 22 15 6 7 15 6 10 12 50 91 133 chain 54115 chr3 198295559 + 159337024 159337642 L1PA4 6152 + 3814 4435 28187 73 0 2 369 0 1 176 chain 22608 chr3 198295559 + 159344966 159345248 AluSg7 307 + 0 302 52975 54 2 21 56 0 1 170 chain 11567 chr3 198295559 + 159356095 159356219 L1PA2 6032 + 5906 6030 67630 124 chain 19696 chr3 198295559 + 159367148 159367413 AluSp 311 + 38 297 56791 198 8 4 10 1 0 17 4 3 27 chain 76428 chr3 198295559 + 159401906 159402758 L1PA4 6152 + 5108 5968 22452 23 0 8 829 chain 547942 chr3 198295559 + 159423068 159429205 L1PA3long 6157 + 0 6157 867 988 0 17 185 0 3 247 1 0 1742 0 9 864 16 0 37 0 1 264 0 4 128 1 3 1574 8 9 82 chain 71743 chr3 198295559 + 159444932 159445719 L1PA3long 6157 + 5052 5839 23607 787 chain 29094 chr3 198295559 + 159445719 159446034 L1PA3long 6157 + 5840 6155 43196 315 chain 541553 chr3 198295559 + 159491122 159497259 L1PA4 6152 + 4 6152 1230 444 14 13 114 0 4 129 1 2 320 1 0 786 0 1 6 1 0 1360 1 0 506 2 0 1014 0 4 1289 1 8 148 chain 3901 chr3 198295559 + 159499584 159499639 MER5A 189 + 36 90 92110 50 1 0 4 chain 30221 chr3 198295559 + 159545183 159545583 MLT2A1 477 + 0 395 41828 167 6 3 9 0 1 23 1 2 180 4 0 10 chain 7794 chr3 198295559 + 159549635 159549734 MLT1B 390 + 291 390 75385 99 chain 64865 chr3 198295559 + 159556132 159556834 L1PA3long 6157 + 5361 6063 25224 702 chain 8293 chr3 198295559 + 159556834 159556927 L1PA3long 6157 + 6064 6157 74183 93 chain 4119 chr3 198295559 + 159582464 159582512 Tigger1 2417 + 2183 2231 90660 48 chain 48685 chr3 198295559 + 159591303 159591934 L1PA8 5853 + 5229 5853 30056 328 8 7 46 2 0 69 2 1 13 1 0 46 6 5 15 1 0 94 chain 68525 chr3 198295559 + 159595889 159596676 L1PA5 6144 + 5070 5861 24328 201 1 5 585 chain 26382 chr3 198295559 + 159611331 159611688 L1PA8 5853 + 5496 5846 47146 66 1 0 46 2 0 71 1 0 4 6 5 52 2 1 19 1 0 86 chain 22669 chr3 198295559 + 159630374 159630858 L1PB1 5432 + 5017 5422 52867 68 6 0 18 1 2 9 7 0 24 1 0 4 1 0 14 2 0 3 2 0 9 2 0 52 2 1 23 41 0 38 1 0 14 20 12 19 27 22 21 1 0 21 1 0 13 1 0 18 chain 51414 chr3 198295559 + 159653090 159653753 L1PA8 5853 + 5196 5853 29076 324 1 2 42 1 0 44 2 0 67 5 4 8 2 1 52 2 1 19 2 1 92 chain 5538 chr3 198295559 + 159672526 159672663 MER20 218 + 19 164 83092 15 6 3 38 33 41 9 1 4 35 chain 17635 chr3 198295559 + 159711205 159711389 AluYa5 310 + 126 310 59084 184 chain 525268 chr3 198295559 + 159714265 159720397 L1PA5 6144 + 0 6144 2038 103 0 5 90 5 0 377 5 6 588 9 0 258 0 1 154 0 1 731 5 17 348 0 1 70 0 1 89 0 6 311 0 3 10 1 0 753 1 0 1371 1 0 224 0 1 55 1 2 127 0 2 105 1 4 192 7 0 133 2 0 5 chain 6042 chr3 198295559 + 159822617 159822695 MADE1 96 + 1 95 80917 28 0 16 50 chain 27160 chr3 198295559 + 159827543 159827831 AluYb8 318 + 20 308 46026 288 chain 7710 chr3 198295559 + 159919724 159919834 L1MB4 1306 + 750 859 75599 47 0 1 4 1 0 10 1 0 47 chain 73273 chr3 198295559 + 159940072 159940924 L1PA5 6144 + 5116 5950 23267 510 0 7 8 25 0 309 chain 5220 chr3 198295559 + 159948820 159949024 MLT1F1 559 + 4 220 84588 29 101 121 23 16 8 35 chain 4595 chr3 198295559 + 159949162 159949226 L1MC1 2226 + 1985 2047 87815 6 2 0 56 chain 9196 chr3 198295559 + 159974749 159974874 MER85 139 + 2 139 72128 90 6 18 29 chain 5211 chr3 198295559 + 160061001 160061063 LTR12C 1709 + 775 837 84630 62 chain 25630 chr3 198295559 + 160061089 160061461 LTR12C 1709 + 703 1037 48270 134 1 0 167 45 8 25 chain 17890 chr3 198295559 + 160062186 160062472 AluSc8 310 + 17 291 58771 115 21 25 81 10 5 7 0 5 28 16 0 8 chain 270184 chr3 198295559 + 160118632 160122078 L1PA8 5853 + 2429 5853 7703 459 2 0 46 9 13 226 0 18 291 0 1 8 14 15 118 49 50 12 4 6 310 26 1 51 0 4 111 2 0 764 1 0 77 2 0 77 0 1 306 33 0 170 1 0 44 2 0 70 12 10 48 8 24 93 chain 3593 chr3 198295559 + 160138338 160138376 L1PA8 5853 + 5570 5608 94486 38 chain 5827 chr3 198295559 + 160138378 160138447 L1PA8 5853 + 5608 5677 81798 69 chain 13680 chr3 198295559 + 160138450 160138626 L1PA8 5853 + 5679 5853 64041 14 1 0 47 2 1 9 0 1 9 1 0 93 chain 33050 chr3 198295559 + 160141161 160141591 MLT2A1 477 + 4 477 39476 165 4 1 9 0 1 23 0 1 181 21 65 27 chain 5312 chr3 198295559 + 160176149 160176214 MER63B 433 + 111 176 84144 65 chain 6066 chr3 198295559 + 160178004 160178185 MER6B 211 + 26 210 80851 28 92 95 61 chain 104914 chr3 198295559 + 160178264 160179570 SVA_C 1631 + 226 1612 17701 240 1 40 34 40 0 135 0 40 138 4 0 11 2 0 3 1 0 42 6 4 42 2 0 9 1 0 12 0 45 227 9 7 26 0 10 321 chain 263948 chr3 198295559 + 160240007 160244447 L1PBa 3878 + 167 3793 7858 46 1 0 8 19 17 212 42 46 28 1 0 239 549 48 31 0 1 141 2 3 280 1 0 276 1 0 62 13 11 6 0 3 165 0 2 160 1 0 555 4 0 111 11 15 34 1 0 44 3 0 26 1 2 37 7 5 15 0 3 256 0 2 50 308 3 113 17 0 17 1 24 284 15 11 156 2 1 21 2 0 7 7 6 12 5 0 10 1 0 5 5 3 13 chain 166586 chr3 198295559 + 160323501 160325341 L1PA3long 6157 + 2866 4706 11300 168 0 1 134 1 0 1537 chain 5047 chr3 198295559 + 160338127 160338196 L1M3f 2199 + 35 101 85429 47 3 0 19 chain 63851 chr3 198295559 + 160344348 160345296 L1MA2 4263 + 3168 4110 25442 126 0 1 45 3 5 205 17 16 17 7 3 76 1 0 49 0 3 79 19 16 115 2 3 24 10 14 93 7 0 47 1 0 5 chain 474177 chr3 198295559 + 160359375 160365009 L1PA6 6164 + 0 6162 3760 88 0 511 109 2 8 28 9 7 100 7 9 969 2 0 248 39 17 24 3 6 201 0 2 34 0 1 905 5 6 191 6 14 280 1 0 79 0 2 56 0 1 461 0 4 317 0 1 88 0 6 397 0 2 140 0 4 192 0 1 653 chain 16255 chr3 198295559 + 160439475 160439827 THE1B 368 + 0 368 60673 80 60 72 16 30 27 9 4 0 10 17 29 63 7 6 56 chain 23436 chr3 198295559 + 160460919 160461235 MER1A 529 + 209 519 51699 256 12 6 23 0 7 6 7 0 12 chain 14505 chr3 198295559 + 160471340 160471558 THE1C-int 1605 + 916 1598 62893 118 25 489 75 chain 29360 chr3 198295559 + 160519512 160519826 AluYb9 318 + 0 313 42796 123 1 0 190 chain 26152 chr3 198295559 + 160584486 160584872 L1MA4 2864 + 33 421 47495 26 1 0 62 5 6 188 10 9 52 9 10 8 0 2 25 chain 124920 chr3 198295559 + 160588165 160590355 L1M1 2793 + 522 2620 14722 12 16 14 6 2 0 6 3 0 10 5 9 10 48 29 17 83 26 26 1 0 8 53 40 5 2 0 5 2 0 11 25 20 20 7 6 29 9 3 5 0 3 48 8 6 6 1 0 93 11 10 170 3 4 90 4 0 4 3 0 113 4 9 64 0 1 25 4 7 261 2 1 137 1 0 43 5 10 66 4 15 61 1 5 14 1 0 204 0 1 12 0 5 4 1 0 89 49 45 80 4 1 74 chain 46219 chr3 198295559 + 160629803 160630363 L1PA10 4194 + 3491 4060 30951 108 0 4 28 1 4 112 0 1 4 1 0 93 0 2 213 chain 4600 chr3 198295559 + 160632507 160632606 L1MA7 2200 + 1865 1963 87795 43 25 26 15 2 0 14 chain 26929 chr3 198295559 + 160638600 160639044 MLT2A2 560 + 0 560 46362 178 2 0 15 15 34 75 0 109 47 0 5 7 16 15 17 29 15 43 chain 92531 chr3 198295559 + 160654985 160656443 L1M1 2793 + 809 2258 19270 22 8 5 30 0 1 28 3 1 6 1 0 101 1 0 36 1 0 23 0 3 86 22 24 5 1 0 88 7 0 6 3 1 379 44 45 107 4 5 69 3 7 83 0 7 12 21 21 44 10 9 33 13 1 9 0 3 96 5 6 8 1 0 39 chain 87599 chr3 198295559 + 160712621 160713652 L1PA7 6471 + 5420 6453 20122 200 1 4 174 2 1 654 chain 6144 chr3 198295559 + 160719159 160719248 LTR54B 464 + 0 94 80556 55 5 10 29 chain 5539 chr3 198295559 + 160722467 160722545 MADE1 96 + 3 96 83087 43 4 19 31 chain 94613 chr3 198295559 + 160798206 160799618 Tigger1 2417 + 872 2383 18951 18 6 30 77 1 3 145 49 48 482 0 38 37 50 45 55 0 1 183 9 24 22 0 1 49 0 13 27 0 10 32 3 2 17 0 1 25 3 0 74 1 4 26 1 2 20 chain 15549 chr3 198295559 + 160814803 160815159 L1PB1 5432 + 5114 5430 61589 20 1 0 12 1 0 12 17 11 51 2 1 16 2 1 43 1 0 13 26 14 18 3 1 5 1 0 14 13 4 20 1 0 23 13 11 18 1 0 4 1 0 4 chain 313891 chr3 198295559 + 160887876 160892141 L1PA7 6471 + 2148 6455 6535 203 9 10 202 9 10 62 1 3 124 0 1 4 1 0 122 0 4 155 0 6 46 5 10 14 2 47 61 45 0 8 5 19 232 7 6 4 1 0 80 1 3 19 0 3 166 7 6 222 2 1 201 1 2 38 0 1 34 10 15 230 0 2 54 0 1 27 0 2 80 0 4 15 1 0 36 8 10 20 9 14 31 1 5 202 1 2 104 5 7 475 1 0 3 9 0 45 22 9 26 1 3 136 1 0 296 0 1 323 chain 118710 chr3 198295559 + 160915039 160916360 L1PA4 6152 + 4120 5441 15767 369 1 0 271 0 1 680 chain 28115 chr3 198295559 + 160939438 160939793 THE1A 353 + 0 353 44689 110 1 0 92 1 0 151 chain 131745 chr3 198295559 + 160939793 160941363 THE1A-int 1579 + 0 1574 13852 609 0 1 639 0 3 322 chain 13644 chr3 198295559 + 160941376 160941569 THE1A 353 + 9 202 64101 73 4 5 23 14 13 79 chain 11361 chr3 198295559 + 160941571 160941723 THE1A 353 + 202 353 67987 75 2 1 75 chain 10192 chr3 198295559 + 160958944 160959084 L1PB2 3958 + 3701 3838 70029 50 4 2 22 1 0 63 chain 53628 chr3 198295559 + 160995966 160996772 L1PB1 5432 + 4642 5422 28357 452 11 11 9 1 0 21 11 9 14 5 1 9 2 0 52 2 1 15 1 0 45 5 4 10 1 0 5 22 11 15 3 1 5 1 0 12 2 0 26 1 0 23 0 5 6 1 0 18 chain 14067 chr3 198295559 + 161007568 161007759 MER30 238 + 30 238 63495 68 8 19 36 0 6 79 chain 10618 chr3 198295559 + 161025619 161025790 MLT1A1 405 + 174 404 69191 12 0 2 18 24 82 47 1 0 69 chain 148801 chr3 198295559 + 161033071 161034858 L1PA7 6471 + 4689 6466 12433 166 0 1 291 8 7 466 2 1 82 1 0 93 0 2 516 18 8 144 chain 28037 chr3 198295559 + 161037951 161038252 AluYa5 310 + 0 300 44805 123 1 0 177 chain 60021 chr3 198295559 + 161040677 161041467 MER4E1 777 + 0 769 26368 25 2 0 148 0 1 4 1 0 7 1 0 311 16 0 39 28 15 181 0 11 27 chain 367641 chr3 198295559 + 161044567 161049032 L1PA5 6144 + 1925 6086 5699 698 2 3 522 4 0 28 313 0 1173 0 4 940 0 8 785 chain 7147 chr3 198295559 + 161049333 161049421 Tigger4a 237 + 53 141 77114 88 chain 50288 chr3 198295559 + 161063561 161064183 L1PA8 5853 + 5236 5853 29456 328 1 0 46 2 0 69 1 0 9 1 0 52 2 1 19 2 1 70 0 2 20 chain 41771 chr3 198295559 + 161116307 161116962 L1MA1 4479 + 3482 4142 33510 37 2 0 17 6 7 41 0 1 44 9 21 63 2 1 25 2 0 16 1 0 46 0 1 24 1 0 19 2 0 17 0 4 81 1 0 5 3 0 117 11 12 25 8 6 30 chain 62430 chr3 198295559 + 161118994 161119850 THE1D-int 1627 + 805 1618 25768 645 55 1 113 9 20 34 chain 163443 chr3 198295559 + 161121760 161123848 L1PA7 6471 + 4442 6469 11515 162 0 1 25 27 0 21 4 4 19 0 4 518 0 2 104 0 2 153 0 1 85 1 0 29 1 0 30 1 0 19 0 3 73 1 3 211 27 3 70 18 0 324 1 3 146 6 0 12 chain 14637 chr3 198295559 + 161145287 161145861 MER41-int 2638 + 550 809 62755 26 16 19 53 12 11 19 6 5 13 316 0 113 chain 37291 chr3 198295559 + 161186596 161187027 L1PA8A 6298 + 5860 6291 36555 431 chain 36184 chr3 198295559 + 161199255 161199724 MER4A1 472 + 0 472 37285 346 1 2 52 3 5 67 chain 3269 chr3 198295559 + 161249727 161250151 Kanga2_a 737 + 203 580 97303 25 365 318 34 chain 195634 chr3 198295559 + 161277910 161281480 L1PBa 3878 + 1136 3738 9855 392 9 1 85 3 0 8 0 2 45 0 2 42 297 0 237 4 5 504 7 6 314 0 1 17 0 5 192 692 17 29 11 10 15 6 7 74 0 4 72 3 0 87 0 5 401 2 1 22 chain 54060 chr3 198295559 + 161282741 161283425 L1PB1 5432 + 4220 4902 28207 408 4 0 62 0 1 14 4 5 192 chain 109595 chr3 198295559 + 161285862 161287401 L1PA15 4387 + 2846 4353 17114 122 0 1 197 11 4 137 0 1 504 2 0 17 13 9 26 1 5 19 4 1 43 1 0 33 12 8 131 1 0 26 1 0 55 1 0 17 4 0 15 1 0 39 17 14 31 1 2 11 3 1 14 5 0 24 chain 15379 chr3 198295559 + 161317367 161317580 MER65A 464 + 254 464 61815 31 3 1 28 1 0 150 chain 28644 chr3 198295559 + 161332218 161332517 AluYg6 310 + 0 299 43880 299 chain 13578 chr3 198295559 + 161334661 161334916 L1MA3 4352 + 4106 4322 64201 7 3 0 123 4 0 24 2 0 18 6 5 5 1 0 23 28 0 11 chain 15465 chr3 198295559 + 161339945 161340208 L1PA17 2846 + 2440 2693 61701 62 4 0 26 6 5 55 19 16 25 1 0 21 1 0 43 chain 182652 chr3 198295559 + 161396792 161399130 L1PA10 4194 + 1782 4161 10461 52 0 4 497 1 0 123 0 2 146 6 7 63 0 4 32 6 12 162 0 1 120 0 2 19 2 1 398 0 1 142 0 1 81 0 4 294 6 26 105 0 1 34 3 0 34 1 0 11 chain 2988 chr3 198295559 + 161453952 161453991 MER57F 435 + 392 431 99988 39 chain 4641 chr3 198295559 + 161459977 161460032 MSTA-int 1630 + 1575 1630 87593 55 chain 3054 chr3 198295559 + 161467795 161467935 L1ME1 1623 + 1109 1250 99262 20 87 88 33 chain 43386 chr3 198295559 + 161513193 161513751 L1PA8A 6298 + 4977 5524 32518 116 6 4 89 4 1 300 6 0 37 chain 107038 chr3 198295559 + 161702177 161703846 L1MA1 4479 + 2508 4138 17429 162 7 6 95 3 1 32 8 7 61 2 0 32 2 0 54 1 0 27 2 0 172 2 0 21 12 7 66 1 0 12 14 9 116 4 2 130 3 2 120 4 5 63 8 7 22 2 0 16 1 0 5 2 1 8 1 4 53 1 0 19 2 0 14 1 0 87 1 0 6 2 0 7 10 9 110 1 0 19 14 12 29 chain 513787 chr3 198295559 + 161706806 161713191 L1PA7 6471 + 15 6468 2581 348 0 1 38 12 12 126 2 7 159 15 24 149 0 1 248 0 1 210 6 16 378 0 3 143 0 8 752 1 2 65 0 4 373 0 1 402 0 1 42 3 1 19 0 8 1011 1 2 197 0 1 586 2 1 268 0 5 72 0 2 147 1 0 22 0 1 250 5 6 110 0 8 222 chain 41313 chr3 198295559 + 161729174 161729735 L1PA8 5853 + 5299 5853 33779 265 1 0 44 2 0 70 2 1 14 13 10 5 0 2 30 2 1 19 4 3 90 chain 66312 chr3 198295559 + 161735253 161736122 HSMAR1 1287 + 422 1287 24870 124 15 11 7 0 2 178 3 1 542 chain 85455 chr3 198295559 + 161743337 161744382 MER11C 1089 + 0 1074 20543 259 0 3 53 5 22 253 8 9 175 0 8 292 chain 29038 chr3 198295559 + 161744424 161744791 MLT2A1 477 + 16 383 43265 154 4 1 7 0 1 25 0 1 122 0 1 55 chain 21537 chr3 198295559 + 161776068 161776443 THE1A 353 + 0 353 54451 13 2 0 32 9 10 41 39 38 56 0 1 70 22 1 91 chain 5380 chr3 198295559 + 161784374 161784578 MLT2B3 573 + 68 264 83801 59 122 114 23 chain 94840 chr3 198295559 + 161798369 161799428 L1PA5 6144 + 5081 6143 18928 226 0 1 213 0 2 620 chain 3940 chr3 198295559 + 161829981 161830161 MER20 218 + 37 187 91829 46 118 88 16 chain 17374 chr3 198295559 + 161878876 161879130 L1PA16 3655 + 2562 2817 59390 77 21 22 156 chain 61664 chr3 198295559 + 161907448 161908105 L1HS 6032 + 5375 6032 25951 657 chain 103330 chr3 198295559 + 161937115 161938652 HERVE_a-int 7009 + 5539 7008 17912 4 1 0 64 1 0 66 3 1 20 1 0 11 1 0 259 2 0 102 1 0 15 1 0 3 1 0 56 3 1 20 1 0 12 5 4 76 2 0 138 1 0 42 1 0 31 8 7 4 1 0 16 1 0 5 2 0 7 1 0 36 1 0 22 5 4 43 1 0 4 2 1 26 7 5 56 8 0 9 4 0 26 3 0 54 3 1 26 1 0 31 1 0 6 17 14 24 2 0 31 7 5 15 32 24 25 2 0 6 2 1 10 chain 38317 chr3 198295559 + 161938658 161939117 LTR2 463 + 0 463 35833 19 0 1 38 1 4 401 chain 5846 chr3 198295559 + 161946084 161946148 L1MB7 1623 + 193 257 81708 64 chain 29168 chr3 198295559 + 161954568 161954874 AluYa5 310 + 1 307 43099 306 chain 14494 chr3 198295559 + 162067782 162067963 L1PA13 3608 + 2436 2617 62904 181 chain 108609 chr3 198295559 + 162190039 162191555 THE1B-int 1605 + 16 1594 17233 32 2 1 126 0 1 5 4 36 215 1 27 229 8 9 56 46 50 215 6 8 110 0 2 92 0 1 213 22 16 134 chain 90942 chr3 198295559 + 162222346 162223404 MER11C 1089 + 0 1073 19516 256 0 19 57 4 0 309 0 1 326 2 1 104 chain 59045 chr3 198295559 + 162247702 162248429 L1P2 5180 + 1058 1784 26652 290 1 0 436 chain 4840 chr3 198295559 + 162248429 162248484 MER4A1 472 + 417 472 86476 55 chain 72570 chr3 198295559 + 162284292 162285091 L1PA3long 6157 + 4250 5050 23414 64 0 1 735 chain 366057 chr3 198295559 + 162323389 162327725 HERV17-int 4347 + 12 4347 5723 15 1 0 50 2 1 34 2 0 27 1 0 156 5 0 382 6 7 485 0 3 182 2 0 42 0 1 47 28 24 411 3 10 882 0 1 521 0 1 5 0 1 1047 chain 26256 chr3 198295559 + 162328039 162328369 LTR17 781 + 0 326 47345 30 0 4 245 0 2 18 10 0 27 chain 37891 chr3 198295559 + 162373709 162374188 MER9a1 513 + 0 513 36147 19 1 0 134 1 2 89 1 23 37 0 1 28 0 2 67 0 9 102 chain 161649 chr3 198295559 + 162381945 162383731 L1HS 6032 + 1350 3139 11632 710 0 2 901 0 1 175 chain 3390 chr3 198295559 + 162432595 162432668 MADE1 96 + 0 89 96177 19 19 36 4 1 0 30 chain 185935 chr3 198295559 + 162455732 162457801 L1PA3long 6157 + 4088 6157 10299 1070 0 1 53 6 5 786 6 0 6 0 6 142 chain 204594 chr3 198295559 + 162476319 162479056 L1PA8A 6298 + 3541 6291 9551 79 4 7 68 3 4 172 0 2 389 16 27 152 0 1 455 0 1 4 1 0 47 22 0 132 4 7 188 8 17 167 4 0 29 7 9 387 0 1 27 0 1 45 1 0 17 0 2 285 0 4 24 chain 67559 chr3 198295559 + 162488709 162489462 L1PA4 6152 + 5397 6151 24547 81 0 1 672 chain 79773 chr3 198295559 + 162502327 162503317 L1P3 4156 + 3118 4114 21671 97 0 1 304 1 2 20 1 5 21 0 3 63 1 0 472 2 0 8 chain 49133 chr3 198295559 + 162574426 162575011 LTR12_ 688 + 0 688 29893 353 0 103 232 chain 26161 chr3 198295559 + 162598544 162598946 LTR14B 630 + 8 630 47485 31 0 29 6 0 7 10 5 129 54 6 52 18 7 18 64 2 1 104 1 2 9 0 3 85 chain 32602 chr3 198295559 + 162600154 162600563 LTR12C 1709 + 1295 1702 39859 323 19 17 67 chain 13100 chr3 198295559 + 162628359 162628520 AluSc5 308 + 129 290 64929 161 chain 112130 chr3 198295559 + 162639888 162641329 LTR12C 1709 + 0 1709 16796 260 1 2 201 9 8 177 0 278 186 1 0 5 3 1 106 11 4 9 0 1 286 2 3 26 6 5 54 14 13 84 chain 119350 chr3 198295559 + 162646851 162648389 THE1A-int 1579 + 15 1571 15637 414 0 1 43 5 7 178 0 1 5 2 1 164 9 8 138 0 8 181 8 16 391 chain 29847 chr3 198295559 + 162712459 162712886 LTR7 482 + 0 462 42188 100 21 15 112 6 37 21 1 0 29 0 10 69 0 1 68 chain 279427 chr3 198295559 + 162712910 162716635 HERVH-int 3825 + 0 3825 7435 281 0 2 50 1 0 32 14 15 93 15 17 42 2 1 37 12 160 32 7 7 11 58 0 122 0 1 283 8 1 39 19 4 107 0 14 79 9 0 40 1 0 309 0 1 220 0 4 41 71 75 245 25 29 14 0 1 5 5 4 92 1 0 121 1 2 27 0 3 210 0 1 512 0 3 196 0 4 236 chain 27407 chr3 198295559 + 162717858 162718250 LTR7 482 + 0 474 45691 100 4 49 81 0 31 13 12 6 34 0 10 41 1 2 26 0 1 80 chain 5068 chr3 198295559 + 162736469 162736533 MLT1E1A 663 + 430 494 85318 64 chain 7065 chr3 198295559 + 162782921 162783009 L1MB3 1562 + 1255 1343 77386 88 chain 99796 chr3 198295559 + 162832428 162833802 L1PA8A 6298 + 4926 6267 18322 66 0 5 7 5 0 9 5 11 12 36 1 27 8 6 96 1 2 4 1 0 297 5 6 17 2 0 81 3 0 90 0 2 208 0 2 308 1 8 56 10 1 19 chain 29579 chr3 198295559 + 162855275 162855642 L1PA7 6471 + 6089 6456 42507 367 chain 384954 chr3 198295559 + 162867807 162872544 L1P2 5180 + 2 4688 5398 148 2 1 47 6 5 44 1 0 268 1 0 158 1 2 112 1 0 6 1 0 455 1 0 118 0 5 165 17 0 147 0 2 52 0 3 121 0 1 98 6 0 88 4 0 484 0 1 681 10 14 32 0 6 424 4 0 284 0 3 101 29 2 281 1 0 274 11 0 53 chain 29897 chr3 198295559 + 162926108 162926445 L1PA4 6152 + 5813 6151 42139 188 3 4 146 chain 135609 chr3 198295559 + 162961322 162962922 L1PA5 6144 + 3617 5195 13478 261 0 1 933 0 1 179 0 1 42 26 1 159 chain 287985 chr3 198295559 + 162966314 162970017 L1PA7 6471 + 2756 6462 7197 58 10 1 626 0 5 76 4 1 106 3 0 72 2 3 109 0 4 184 3 1 471 15 15 34 0 2 149 4 5 749 8 10 44 0 3 137 1 0 13 0 1 68 0 1 433 15 14 147 19 20 85 0 1 58 chain 101383 chr3 198295559 + 162987168 162988480 LTR12C 1709 + 0 1709 18143 211 6 7 21 0 1 49 8 0 49 0 43 83 0 1 4 7 0 135 5 6 39 0 2 101 0 366 106 11 4 78 0 6 91 1 0 215 8 7 84 chain 149011 chr3 198295559 + 163004457 163006103 L1PA3long 6157 + 4501 6157 12417 69 0 1 28 0 9 1549 chain 238913 chr3 198295559 + 163079849 163083054 L1PA7 6471 + 3057 6464 8497 44 0 4 264 0 196 859 1 0 150 1 0 4 10 11 401 4 12 16 0 1 128 2 1 129 6 13 8 7 0 22 0 1 176 3 7 156 11 14 12 12 14 9 0 1 65 1 2 27 0 1 58 0 1 275 1 0 34 0 1 25 19 0 61 66 66 138 chain 9568 chr3 198295559 + 163135567 163135712 L1PA8 5853 + 5707 5850 71333 33 2 1 10 11 10 89 chain 90203 chr3 198295559 + 163150775 163151776 L1PA3long 6157 + 845 1847 19645 404 1 0 316 0 2 280 chain 102957 chr3 198295559 + 163230765 163232122 L1PA8 5853 + 4501 5853 17957 28 2 0 143 1 0 312 0 4 21 2 0 47 0 1 28 0 2 475 1 0 46 2 0 69 24 22 41 3 2 18 1 0 93 chain 60359 chr3 198295559 + 163234722 163235517 L1PA7 6471 + 5658 6459 26271 151 0 3 16 1 0 145 4 5 245 5 7 21 0 1 56 1 9 11 8 0 131 chain 564161 chr3 198295559 + 163236941 163242962 L1HS 6032 + 6 6028 109 5350 0 1 671 chain 96536 chr3 198295559 + 163252119 163253379 L1PA7 6471 + 5036 6341 18712 472 0 1 100 6 7 5 2 0 76 8 6 104 2 1 165 0 1 78 0 1 13 6 9 62 2 1 87 15 59 57 chain 315045 chr3 198295559 + 163298607 163302705 L1PA7 6471 + 2306 6467 6504 103 0 49 61 0 2 120 20 7 55 0 1 398 0 1 25 2 0 34 8 9 68 6 10 51 0 20 684 5 6 36 1 2 70 3 4 99 5 3 22 1 0 305 1 0 273 1 2 129 1 0 181 0 1 341 0 1 141 2 1 273 0 2 370 0 1 191 3 0 9 chain 91110 chr3 198295559 + 163319691 163320719 L1PA4 6152 + 2541 3572 19482 81 0 3 290 0 1 260 2 1 395 chain 9502 chr3 198295559 + 163324868 163324970 L1PA2 6032 + 5927 6029 71467 102 chain 8146 chr3 198295559 + 163329171 163329318 MER61A 341 + 198 341 74530 22 1 0 43 36 33 45 chain 495543 chr3 198295559 + 163429707 163435231 L1PA3long 6157 + 603 6156 3282 472 0 1 113 0 3 1134 7 26 76 0 1 1935 0 2 274 0 1 298 0 1 884 0 1 331 chain 67057 chr3 198295559 + 163467857 163468602 L1PA3long 6157 + 4738 5481 24692 358 1 0 211 1 0 174 chain 28081 chr3 198295559 + 163472064 163472368 L1PA2 6032 + 4481 4785 44742 304 chain 22183 chr3 198295559 + 163472945 163473275 L1PA8 5853 + 5529 5852 53594 34 2 1 44 2 0 66 18 16 54 1 0 16 1 0 92 chain 195102 chr3 198295559 + 163483965 163486119 L1PA3long 6157 + 4001 6157 9884 1117 3 4 184 0 1 850 chain 110067 chr3 198295559 + 163498850 163500282 LTR12C 1709 + 0 1709 17073 21 0 9 232 0 1 40 0 1 160 6 4 21 4 3 26 0 1 135 0 278 179 1 0 5 10 8 100 11 4 35 0 2 293 1 0 63 12 11 77 chain 2852 chr3 198295559 + 163511245 163511281 LTR41B 718 + 0 36 101235 36 chain 9103 chr3 198295559 + 163531258 163531389 L1PA8 5853 + 5723 5853 72340 17 2 1 19 2 1 23 0 1 68 chain 24051 chr3 198295559 + 163571205 163571550 THE1A 353 + 0 341 50726 61 0 2 5 2 0 15 1 0 26 2 1 75 15 13 143 chain 118088 chr3 198295559 + 163571562 163573108 THE1A-int 1579 + 0 1579 15873 113 0 3 382 1 0 43 1 2 82 0 1 130 17 20 303 21 47 453 chain 49522 chr3 198295559 + 163636113 163636650 L1PA2 6032 + 3747 4288 29756 482 0 4 55 chain 231263 chr3 198295559 + 163640981 163643667 L1PA5 6144 + 3446 6143 8716 239 2 0 474 6 7 175 0 4 202 1 2 194 0 3 551 0 4 308 3 2 199 0 1 144 1 0 4 0 1 183 chain 49180 chr3 198295559 + 163689142 163689770 LTR14B 630 + 0 630 29874 316 8 11 225 1 0 78 chain 105934 chr3 198295559 + 163760724 163761870 L1PA3long 6157 + 4535 5681 17573 1146 chain 56010 chr3 198295559 + 163774890 163775566 L1PA7 6471 + 4803 5481 27563 146 1 0 29 0 2 436 0 1 64 chain 38434 chr3 198295559 + 163801601 163802135 LTR12F 595 + 0 593 35765 74 0 37 33 2 0 33 40 63 148 0 1 204 chain 429375 chr3 198295559 + 163802166 163807315 HERV9-int 5642 + 11 5168 4757 505 0 1 84 14 2 113 6 0 398 7 20 110 1 0 31 1 3 120 0 1 5 1 0 174 6 4 456 3 4 1167 5 19 182 1 0 603 4 2 790 0 1 362 chain 125043 chr3 198295559 + 163855342 163856714 L1PA3long 6157 + 4784 6157 14692 1039 0 1 333 chain 27292 chr3 198295559 + 163873965 163874331 L1PA8 5853 + 5470 5847 45834 50 0 1 43 1 0 45 2 0 63 2 17 55 2 1 15 2 1 86 chain 28144 chr3 198295559 + 163906925 163907229 L1PA2 6032 + 5728 6032 44645 304 chain 26911 chr3 198295559 + 163907529 163907935 LTR7 482 + 0 482 46390 54 23 61 43 8 9 57 0 1 41 0 31 8 0 3 65 9 11 98 chain 300621 chr3 198295559 + 163907937 163911780 HERVH-int 3825 + 0 3825 6810 333 2 1 196 1 0 11 1 0 4 113 59 13 2 1 13 3 0 60 7 6 82 1 0 691 1 0 215 4 31 1081 14 0 311 1 27 197 5 6 42 2 3 25 26 27 292 6 11 37 1 0 50 chain 26173 chr3 198295559 + 163913581 163913982 LTR7 482 + 0 476 47468 68 7 96 16 46 0 44 0 1 39 1 32 180 chain 43394 chr3 198295559 + 163918030 163918587 MLT2A2 560 + 0 560 32515 39 0 1 164 4 6 350 chain 92553 chr3 198295559 + 163942284 163943338 L1PA5 6144 + 3836 4890 19265 1054 chain 116705 chr3 198295559 + 164002787 164004226 LTR12C 1709 + 0 1709 16100 38 15 14 210 0 2 36 0 1 349 0 278 184 1 0 4 4 2 106 0 4 25 12 1 455 chain 37534 chr3 198295559 + 164009944 164010475 L1PA8 5853 + 5328 5852 36381 37 0 1 155 1 0 43 2 1 40 5 3 70 2 1 11 6 5 49 1 0 16 1 0 92 chain 288415 chr3 198295559 + 164036538 164039724 L1PA3long 6157 + 2963 6156 7183 267 0 4 2236 0 1 529 0 2 154 chain 79703 chr3 198295559 + 164055358 164056346 L1PA7 6471 + 4646 5642 21693 303 4 0 132 4 0 93 0 11 54 0 1 192 0 1 191 3 6 12 chain 21697 chr3 198295559 + 164122535 164122913 L1PA15 4387 + 4008 4366 54228 96 1 0 27 1 0 54 1 0 16 10 6 9 3 2 49 27 23 22 2 0 18 5 0 27 1 0 9 chain 219031 chr3 198295559 + 164134268 164136882 L1PA4 6152 + 3382 5973 9066 54 25 0 244 1 0 621 1 0 1002 1 5 116 0 1 473 2 1 74 chain 87837 chr3 198295559 + 164174788 164175888 L1PA7 6471 + 5365 6467 20078 256 1 0 452 3 4 61 0 1 12 0 1 315 chain 263159 chr3 198295559 + 164257043 164260536 L1PA8 5853 + 2327 5848 7878 314 1 2 165 0 1 73 8 0 402 7 39 62 8 10 87 1 2 566 7 15 68 0 1 60 0 2 134 7 4 202 7 0 131 0 6 62 1 0 4 0 1 49 0 1 187 7 11 18 0 3 72 0 1 115 21 0 10 0 11 132 3 4 48 2 1 70 2 1 68 0 1 21 1 0 46 2 0 67 20 18 45 2 1 14 6 5 88 chain 3671 chr3 198295559 + 164271423 164271463 MLT1A 405 + 135 175 93809 40 chain 440915 chr3 198295559 + 164291525 164296426 L1HS 6032 + 0 4906 4558 257 1 0 15 9 0 92 0 1 3058 0 13 1010 0 1 459 chain 4547 chr3 198295559 + 164321207 164321271 MER1B 344 + 202 264 88075 13 2 0 35 0 1 4 1 0 9 chain 49592 chr3 198295559 + 164327824 164328421 L1PA7 6471 + 5617 6226 29732 327 12 24 258 chain 4107 chr3 198295559 + 164396488 164396534 MADE1 96 + 0 46 90724 46 chain 55049 chr3 198295559 + 164547821 164548451 L1PA5 6144 + 5331 5963 27857 181 0 2 449 chain 3290 chr3 198295559 + 164591225 164591272 MER3 215 + 122 169 97104 4 0 1 13 1 0 29 chain 30105 chr3 198295559 + 164633399 164633752 L1PA2 6032 + 5681 6032 41938 15 1 0 168 8 0 5 0 8 135 1 0 20 chain 153142 chr3 198295559 + 164669030 164670867 L1PA7 6471 + 4631 6466 12169 324 3 1 265 1 0 378 0 1 866 chain 543986 chr3 198295559 + 164702607 164708620 L1PA3long 6157 + 0 6142 1087 152 0 1 230 1 0 393 0 128 3569 0 1 1668 chain 108995 chr3 198295559 + 164783892 164785312 SVA_B 1603 + 6 1603 17183 15 55 0 18 3 32 496 3 0 137 6 9 16 10 87 22 0 40 13 56 143 520 0 1 42 2 0 6 chain 98630 chr3 198295559 + 164786818 164787996 L1P1 4361 + 5 1183 18460 525 0 1 281 2 1 370 chain 78507 chr3 198295559 + 164818301 164819589 LTR12D 1347 + 0 1345 21981 184 86 86 28 2 38 200 206 32 130 15 8 207 0 2 28 0 200 202 chain 3977 chr3 198295559 + 164818801 164818849 LTR12D 1347 + 645 693 77468 48 chain 2337 chr3 198295559 + 164818849 164818957 LTR12D 1347 + 611 678 80077 10 41 0 57 chain 3908 chr3 198295559 + 164818960 164819006 LTR12D 1347 + 490 536 92067 46 chain 43306 chr3 198295559 + 164824831 164825433 PABL_A 660 + 0 648 32564 81 4 5 189 12 56 130 4 3 112 11 13 59 chain 17646 chr3 198295559 + 164860648 164860888 MER41A 554 + 314 554 59068 142 6 0 12 0 5 62 5 6 13 chain 116464 chr3 198295559 + 164921418 164922793 L1PA5 6144 + 4763 6144 16140 531 1 4 512 0 1 319 1 3 11 chain 8132 chr3 198295559 + 164945001 164945109 MLT2C2 476 + 2 109 74557 71 1 0 36 chain 52853 chr3 198295559 + 164970794 164971439 L1PA7 6471 + 5451 6105 28621 169 2 11 474 chain 194927 chr3 198295559 + 165025207 165028075 L1PBa 3878 + 880 3802 9893 281 1 0 137 0 13 182 8 7 104 1 7 10 0 1 231 11 14 411 0 12 359 1 4 8 3 0 46 0 3 89 7 11 140 131 142 30 0 1 99 3 0 29 1 2 30 16 9 163 0 1 5 5 6 9 0 19 133 16 19 68 2 1 22 2 0 10 19 13 11 1 0 5 5 3 13 1 0 9 chain 41623 chr3 198295559 + 165080424 165080912 L1PA5 6144 + 5656 6144 33611 457 0 2 17 3 1 11 chain 123383 chr3 198295559 + 165109548 165110914 L1PA3long 6157 + 4787 6157 14968 1315 0 4 51 chain 28480 chr3 198295559 + 165301772 165302069 AluYa5 310 + 1 298 44157 297 chain 51679 chr3 198295559 + 165395114 165395847 MER4E1 777 + 34 768 28969 504 6 0 11 7 1 51 41 55 95 1 0 17 chain 59770 chr3 198295559 + 165408287 165409004 L1PA5 6144 + 5421 6142 26441 435 1 2 129 4 11 137 4 0 7 chain 103438 chr3 198295559 + 165415944 165417461 L1PA13 3608 + 262 1754 17893 16 16 14 7 0 1 107 6 1 7 1 0 13 1 0 17 2 0 16 6 3 18 4 3 11 1 0 7 1 0 12 2 0 17 1 0 61 0 1 37 2 0 97 6 1 52 5 6 180 10 12 58 0 1 484 25 20 186 0 1 25 chain 7801 chr3 198295559 + 165429892 165430063 L1PB1 5432 + 5114 5275 75374 24 1 0 4 3 2 12 2 0 3 2 0 9 3 1 48 6 5 14 1 0 14 0 6 6 6 0 13 chain 2985 chr3 198295559 + 165449313 165449400 L1PB1 5432 + 5341 5422 100004 5 2 0 20 7 6 19 1 0 13 5 4 10 1 0 4 chain 19799 chr3 198295559 + 165510913 165511181 L1PA7 6471 + 6211 6466 56677 191 10 1 55 4 0 8 chain 24246 chr3 198295559 + 165529864 165530207 MLT2A1 477 + 4 347 50425 145 32 31 23 1 2 142 chain 3904 chr3 198295559 + 165542552 165542596 MER95 416 + 2 46 92097 44 chain 39130 chr3 198295559 + 165547590 165548053 HERVK11D-int 613 + 153 613 35266 135 1 0 151 0 1 145 3 0 28 chain 66291 chr3 198295559 + 165548053 165548895 MER11D 897 + 0 897 24879 240 0 10 22 28 49 103 3 4 165 4 27 277 chain 541067 chr3 198295559 + 165572331 165578346 L1PA3long 6157 + 0 6152 1274 152 0 1 420 0 4 199 0 128 989 0 1 1282 1 2 768 0 1 1379 0 1 825 chain 49959 chr3 198295559 + 165579922 165580554 L1PA8 5853 + 5228 5853 29583 336 1 0 44 2 0 71 1 0 14 1 0 46 5 4 17 1 0 93 chain 364236 chr3 198295559 + 165587144 165591172 L1PA3long 6157 + 2126 6153 5744 3889 1 0 138 chain 19295 chr3 198295559 + 165620650 165620935 MER4D1 891 + 16 320 57245 90 25 47 113 4 1 53 chain 11664 chr3 198295559 + 165637908 165638048 MER4E 760 + 0 140 67455 140 chain 154681 chr3 198295559 + 165655175 165657114 L1P2 5180 + 2 1964 12071 43 6 14 39 0 13 34 10 9 44 6 5 44 3 2 208 5 4 45 15 14 267 8 6 496 0 1 193 0 8 473 chain 46667 chr3 198295559 + 165675054 165675640 THE1B-int 1605 + 0 611 30786 432 0 25 154 chain 162706 chr3 198295559 + 165779212 165781756 L1PA8 5853 + 3632 5853 11561 171 0 3 57 0 4 125 0 2 89 0 1 98 16 18 102 0 1 206 15 15 51 0 1 9 0 1 140 1 0 4 10 11 268 2 0 376 321 0 178 4 0 8 0 3 7 9 0 21 8 6 70 2 1 61 2 1 19 1 0 93 chain 22470 chr3 198295559 + 165878973 165879316 L1PA8 5853 + 5515 5849 53162 20 2 0 29 1 0 44 2 0 67 6 5 13 1 0 46 4 3 16 4 3 88 chain 215400 chr3 198295559 + 165880717 165883089 L1PA3long 6157 + 3787 6157 9160 2111 1 0 117 1 0 142 chain 4245 chr3 198295559 + 165894039 165894089 MADE1 96 + 46 96 89850 50 chain 67095 chr3 198295559 + 165914756 165915567 L1PA7 6471 + 5638 6457 24684 606 1 0 63 4 5 87 9 17 41 chain 25050 chr3 198295559 + 165921080 165921513 LTR14A 344 + 0 344 49190 45 3 0 8 41 0 58 31 0 94 20 0 57 0 5 4 0 1 72 chain 446807 chr3 198295559 + 165931104 165936584 L1PA6 6164 + 1 6160 4441 138 15 0 8 0 15 119 7 8 278 1 0 23 0 1 480 0 1 285 8 0 93 1 3 33 0 1 264 8 6 517 0 1 58 0 1 62 1 5 104 6 7 73 0 677 630 8 9 1096 1 0 317 0 1 9 6 5 831 chain 72529 chr3 198295559 + 165954248 165955352 L1PB1 5432 + 4342 5417 23426 284 2 0 145 5 6 326 1 2 9 3 0 22 28 22 9 2 0 53 2 1 16 1 0 41 8 7 11 3 0 17 30 20 13 2 0 24 1 0 22 0 3 9 1 0 9 1 0 4 chain 24415 chr3 198295559 + 165957322 165957594 L1PA4 6152 + 5871 6143 50143 272 chain 163183 chr3 198295559 + 165961012 165962811 L1PA3long 6157 + 2151 3951 11534 154 1 2 1644 chain 67005 chr3 198295559 + 165982253 165983012 L1PA5 6144 + 5377 6144 24701 91 0 8 668 chain 23784 chr3 198295559 + 166041995 166042293 AluSp 311 + 0 292 51135 100 7 1 191 chain 54132 chr3 198295559 + 166077555 166078167 L1PA5 6144 + 5263 5879 28178 34 0 4 578 chain 9023 chr3 198295559 + 166157776 166157871 L1PA5 6144 + 3992 4087 72510 95 chain 4029 chr3 198295559 + 166158141 166158197 MLT1A0 366 + 291 350 91254 40 2 5 14 chain 4045 chr3 198295559 + 166220879 166220930 MER51A 677 + 293 344 91121 51 chain 409615 chr3 198295559 + 166228040 166232462 L1PA2 6032 + 1603 6027 5028 92 0 2 4330 chain 62727 chr3 198295559 + 166254010 166254795 L1PA8A 6298 + 5488 6287 25704 92 0 1 154 1 0 169 0 6 166 0 7 9 0 1 194 chain 16438 chr3 198295559 + 166349977 166350209 THE1B 368 + 150 368 60463 45 7 0 54 7 0 119 chain 149371 chr3 198295559 + 166354770 166364796 L1PA3long 6157 + 4323 6149 12397 1314 8200 0 512 chain 19450 chr3 198295559 + 166356138 166356359 L1PA3long 6157 + 5683 5905 57088 140 0 1 81 chain 54494 chr3 198295559 + 166378681 166379918 L1PA7 6471 + 5183 6459 28046 319 0 35 77 8 7 15 14 17 56 0 1 428 0 1 158 2 1 5 0 1 155 chain 47528 chr3 198295559 + 166397129 166397729 L1P3 4156 + 3170 3781 30468 317 0 1 58 0 4 88 11 17 126 chain 80592 chr3 198295559 + 166423794 166424916 LTR12C 1709 + 0 1709 21516 214 0 2 37 26 0 14 1 26 45 0 43 227 1 2 65 11 446 103 0 4 35 0 2 181 55 26 4 1 0 39 1 132 62 chain 28413 chr3 198295559 + 166459693 166459991 AluYd8 298 + 0 298 44249 298 chain 445301 chr3 198295559 + 166510313 166516856 L1PA8A 6298 + 79 6290 4466 40 67 71 14 10 5 12 5 4 4 1 0 6 1 0 8 1 0 14 4 0 8 1 0 42 2 1 11 15 9 79 13 15 10 51 10 26 1 0 138 2 0 24 0 4 386 0 1 90 15 0 11 1 4 11 2 0 85 1 2 52 14 6 398 1 0 332 6 0 7 1 8 168 0 1 44 1 0 8 4 5 135 0 2 67 0 1 5 7 6 9 0 8 99 20 29 609 0 1 4 2 1 76 1 4 51 0 1 12 307 13 4 0 1 14 1 0 51 0 2 140 27 22 18 0 1 4 1 0 59 3 0 163 6 7 603 0 2 314 0 1 31 5 6 12 20 22 299 3 4 104 1 3 70 19 24 107 4 5 62 0 5 21 2 4 102 0 1 144 12 7 465 chain 70243 chr3 198295559 + 166518637 166519540 L1PA7 6471 + 5338 6254 23941 42 0 5 201 24 19 9 0 3 225 4 5 175 0 8 14 0 1 209 chain 26387 chr3 198295559 + 166571709 166572054 THE1B 368 + 0 358 47137 44 0 15 49 1 0 67 2 1 182 chain 20589 chr3 198295559 + 166590237 166590490 L1PA7 6471 + 6217 6468 55660 242 2 0 9 chain 18397 chr3 198295559 + 166596921 166597155 L1PA7 6471 + 6227 6460 58247 70 1 2 101 2 0 60 chain 533172 chr3 198295559 + 166617451 166623581 L1PA4 6152 + 14 6150 1702 1410 0 5 1068 7 8 775 7 6 1097 0 1 917 1 0 591 1 0 87 11 12 10 1 3 142 1 0 4 chain 194162 chr3 198295559 + 166717031 166719198 L1PA4 6152 + 3100 5270 9916 896 0 3 1271 chain 123909 chr3 198295559 + 166842629 166844075 LTR12C 1709 + 0 1701 14864 541 1 2 133 0 200 195 0 47 106 0 4 399 1 0 15 0 4 55 chain 3462 chr3 198295559 + 166850342 166850380 FordPrefect 1504 + 1198 1236 95533 38 chain 4194 chr3 198295559 + 166895230 166895278 MLT1B 390 + 283 331 90174 48 chain 93477 chr3 198295559 + 166975651 166976739 LTR12C 1709 + 0 1709 19117 486 1 2 162 0 485 89 0 4 248 0 131 102 chain 24282 chr3 198295559 + 166995711 166996154 MLT2A1 477 + 1 469 50365 45 0 1 76 4 16 23 7 11 28 30 23 41 11 21 101 41 47 24 1 0 11 chain 133342 chr3 198295559 + 167018080 167019691 SVA_B 1603 + 0 1603 13711 19 0 4 19 12 5 717 40 0 53 0 40 87 1 2 12 8 4 14 1 0 33 4 0 239 0 3 352 chain 43059 chr3 198295559 + 167041494 167042002 L1PA7 6471 + 5960 6468 32738 508 chain 183772 chr3 198295559 + 167044783 167046808 L1PA3long 6157 + 4120 6149 10396 1884 0 4 141 chain 128853 chr3 198295559 + 167123453 167125032 L1PA7 6471 + 4835 6468 14172 34 0 34 600 0 2 53 0 4 55 1 0 193 0 2 605 3 18 24 2 0 9 chain 509137 chr3 198295559 + 167129359 167135242 L1PA5 6144 + 0 5870 2804 259 0 1 166 6 5 601 0 1 103 5 7 312 0 4 328 1 2 124 8 9 893 0 1 231 0 1 128 1 0 497 1 0 3 1 0 946 4 0 688 11 0 4 6 0 556 chain 24252 chr3 198295559 + 167191374 167191745 THE1B 368 + 0 368 50412 92 39 31 49 2 1 120 1 0 16 1 8 51 chain 180376 chr3 198295559 + 167247949 167250745 HUERS-P2-int 2744 + 24 2742 10570 7 4 0 21 1 0 33 2 0 6 1 0 50 7 6 16 3 0 10 22 18 42 129 94 106 4 2 10 0 1 12 6 0 7 5 0 32 7 5 248 7 5 188 43 59 355 0 6 724 0 2 23 5 6 134 29 10 80 1 0 94 9 8 68 2 0 36 9 0 33 2 5 5 1 0 9 3 1 12 4 3 13 5 12 14 3 0 34 19 14 12 2 0 27 chain 12827 chr3 198295559 + 167258138 167258299 L1P5 443 + 147 308 65401 161 chain 34177 chr3 198295559 + 167274514 167274962 LTR10G 522 + 0 447 38578 35 1 0 207 1 2 109 1 0 94 chain 537554 chr3 198295559 + 167275267 167281262 L1PA3long 6157 + 0 6156 1479 152 0 1 116 0 1 506 0 128 104 0 38 282 3 0 857 4 0 1910 0 4 1084 6 1 830 0 1 141 chain 491836 chr3 198295559 + 167289314 167295578 L1PA7 6471 + 6 6360 3375 90 17 5 85 4 13 41 4 14 196 3 18 257 34 50 201 2 19 772 5 6 352 0 1 25 0 1 559 1 2 107 0 1 267 8 12 106 0 1 404 4 5 446 0 2 44 1 4 22 0 1 150 1 0 292 1 2 342 11 12 22 2 1 124 1 0 119 8 9 162 0 1 228 0 4 18 1 0 34 0 1 43 7 6 336 0 2 234 0 12 71 chain 33520 chr3 198295559 + 167307051 167307494 L1PA13 3608 + 2642 3097 39069 139 1 8 218 5 9 34 0 1 46 chain 30822 chr3 198295559 + 167357691 167358026 L1PA3long 6157 + 5662 5997 41299 335 chain 13567 chr3 198295559 + 167358031 167358177 L1PA3long 6157 + 6011 6157 64223 146 chain 2784 chr3 198295559 + 167423335 167423370 HERVH-int 3825 + 757 791 101748 23 1 0 11 chain 2734 chr3 198295559 + 167430898 167430994 LTR7 482 + 115 263 102082 17 50 102 29 chain 321586 chr3 198295559 + 167431688 167435469 HERVH-int 3825 + 0 3825 6372 333 1 0 34 1 2 114 0 56 31 1 0 7 1 0 15 4 0 11 7 1 14 1 0 12 4 1 14 12 11 41 1 0 59 1 2 9 0 2 9 0 1 2336 0 2 708 chain 40356 chr3 198295559 + 167484805 167485358 L1PA8 5853 + 5303 5852 34409 41 6 9 210 2 1 46 2 0 69 17 14 7 0 1 39 2 1 19 2 1 91 chain 13034 chr3 198295559 + 167545578 167545862 L1PB1 5432 + 5172 5430 65058 40 2 1 6 1 0 18 1 0 42 2 1 16 3 0 12 9 0 15 12 9 14 3 1 23 1 0 20 8 7 7 1 0 14 1 0 8 1 0 4 chain 202516 chr3 198295559 + 167594664 167596870 L1PA3long 6157 + 3941 6147 9616 2206 chain 17812 chr3 198295559 + 167631060 167631277 L1PA6 6164 + 5949 6161 58875 95 1 0 110 4 0 7 chain 123471 chr3 198295559 + 167801938 167803284 L1PA3long 6157 + 4808 6155 14944 1201 0 1 145 chain 43840 chr3 198295559 + 167805927 167806492 L1PA8 5853 + 5299 5853 32224 265 1 0 45 2 0 73 1 0 6 3 0 6 1 0 40 1 0 9 1 0 17 1 0 93 chain 546344 chr3 198295559 + 168011032 168017055 L1PA2 6032 + 2 6028 951 70 1 2 183 1 0 683 9 11 83 0 3 1625 0 1 875 0 1 2482 4 0 7 chain 19023 chr3 198295559 + 168054770 168055113 THE1B 368 + 0 368 57528 44 10 25 38 15 16 49 1 0 15 46 56 125 chain 118027 chr3 198295559 + 168055113 168056984 THE1B-int 1605 + 0 1605 15881 101 0 1 252 0 1 38 313 0 33 1 26 46 2 1 450 0 1 90 22 42 253 5 6 5 1 0 259 chain 515191 chr3 198295559 + 168128296 168134440 L1PA6 6164 + 0 6162 2507 25 0 1 125 5 8 212 4 12 16 5 4 9 1 0 97 2 1 738 1 0 339 0 1 590 1 0 155 0 1 855 0 1 332 2 1 180 1 0 491 1 0 4 0 1 163 0 4 408 1 0 66 16 10 554 0 13 745 chain 8982 chr3 198295559 + 168186323 168186553 L1MB5 1630 + 1364 1589 72596 28 1 0 61 12 0 12 84 92 32 chain 7304 chr3 198295559 + 168267371 168267500 L1PB4 2604 + 2443 2572 76651 30 0 1 60 26 25 13 chain 189235 chr3 198295559 + 168353096 168355115 L1HS 6032 + 4013 6032 10154 2019 chain 45165 chr3 198295559 + 168387884 168388447 L1PA6 6164 + 5546 6147 31490 38 0 21 227 1 0 39 1 0 4 1 5 76 0 6 42 3 0 6 3 7 25 0 8 97 chain 65416 chr3 198295559 + 168408453 168409196 L1PA4 6152 + 5415 6152 25088 721 3 0 10 3 0 6 chain 55103 chr3 198295559 + 168420762 168421397 L1P1 4361 + 1534 2169 27837 635 chain 34613 chr3 198295559 + 168569896 168570297 L1PA3long 6157 + 5753 6155 38280 253 1 2 147 chain 3126 chr3 198295559 + 168610419 168610454 LTR37B 484 + 443 478 98571 35 chain 147037 chr3 198295559 + 168639102 168640774 L1PA5 6144 + 4466 6140 12540 295 4 5 531 0 4 375 4 0 283 0 1 180 chain 104100 chr3 198295559 + 168657812 168658972 L1PA3long 6157 + 4087 5250 17808 70 0 3 1090 chain 33329 chr3 198295559 + 168746009 168746431 LTR12F 595 + 0 567 39234 24 0 2 46 0 143 352 chain 21390 chr3 198295559 + 168750328 168750670 L1PA8 5853 + 5514 5853 54643 8 0 3 39 1 0 44 2 0 22 0 1 47 41 39 27 1 0 16 2 1 92 chain 3036 chr3 198295559 + 168755433 168755478 MSTC 436 + 390 436 99449 27 1 2 17 chain 125769 chr3 198295559 + 168757940 168759393 L1P1 4361 + 2892 4341 14591 517 1 0 739 1 0 157 1 0 23 2 1 12 chain 58471 chr3 198295559 + 168776668 168777430 THE1B-int 1605 + 0 789 26822 11 5 7 412 1 26 232 6 1 6 0 5 89 chain 109134 chr3 198295559 + 168779958 168781405 LTR12C 1709 + 0 1709 17161 214 9 10 38 33 34 40 0 43 66 1 2 20 15 0 34 14 15 28 0 1 105 0 119 68 1 0 23 0 2 212 0 2 36 1 0 5 3 1 106 0 4 177 0 4 19 0 102 179 chain 42506 chr3 198295559 + 169006454 169006927 L1PA4 6152 + 5675 6152 33058 223 1 0 243 0 5 6 chain 22877 chr3 198295559 + 169011167 169011511 L1M1 2793 + 1145 1475 52539 37 1 0 68 4 0 12 1 0 7 4 0 6 3 0 6 7 6 188 chain 32408 chr3 198295559 + 169027642 169027991 L1PA2 6032 + 5681 6030 40036 349 chain 3986 chr3 198295559 + 169160429 169160474 L1MA3 4352 + 4121 4166 91544 45 chain 103686 chr3 198295559 + 169176344 169177578 L1PA8A 6298 + 5057 6290 17851 432 2 1 43 1 3 540 2 0 214 chain 21382 chr3 198295559 + 169194226 169194466 L1PA4 6152 + 5903 6143 54658 240 chain 129252 chr3 198295559 + 169208633 169210342 L1PA8 5853 + 4132 5848 14115 48 0 1 42 0 3 83 0 1 94 6 1 154 5 6 59 0 1 4 1 0 52 10 0 329 2 0 37 1 3 309 0 1 204 1 0 25 2 0 19 2 0 23 0 23 24 2 1 20 2 3 27 2 1 10 2 1 19 1 0 88 chain 17562 chr3 198295559 + 169271523 169271750 L1PA6 6164 + 5919 6147 59162 26 9 10 192 chain 126692 chr3 198295559 + 169317735 169319569 L1PA7 6471 + 4921 6469 14451 30 1 0 4 0 1 252 0 1 58 0 2 333 0 4 15 1 0 376 307 0 134 0 1 176 7 0 7 0 8 73 5 18 55 chain 262825 chr3 198295559 + 169375162 169378320 L1PA7 6471 + 3296 6458 7882 153 1 0 48 3 0 31 13 11 127 0 1 529 0 1 621 0 1 95 0 1 69 0 1 129 1 0 208 7 8 143 0 5 94 0 1 40 2 1 844 chain 286794 chr3 198295559 + 169413526 169418583 L1P3 4156 + 435 4139 7235 217 0 1 568 0 1 47 8 9 6 1 0 10 6 11 290 0 1 61 1 2 186 1 2 579 0 3 199 1 2 90 0 6 303 14 14 445 8 6 32 13 9 158 1367 0 372 0 3 39 2 0 7 2 1 24 chain 121605 chr3 198295559 + 169416782 169418117 L1PA3long 6157 + 4821 6157 15240 1002 0 1 333 chain 26101 chr3 198295559 + 169444300 169444643 THE1A 353 + 0 342 47573 109 15 14 219 chain 125164 chr3 198295559 + 169444645 169446188 THE1A-int 1579 + 0 1579 14674 46 1 12 487 1 23 101 1 2 533 0 1 66 0 1 307 chain 25270 chr3 198295559 + 169446188 169446520 THE1A 353 + 0 353 48838 110 1 0 99 7 29 98 0 1 7 1 0 9 chain 34556 chr3 198295559 + 169544558 169545036 L1PA8 5853 + 5382 5853 38312 7 2 0 5 0 2 168 10 9 37 2 0 69 1 0 9 4 3 49 2 1 19 2 1 92 chain 412292 chr3 198295559 + 169567925 169572987 L1PA7 6471 + 3 6469 5000 327 3 0 5 9 12 64 0 1 22 5 7 372 3 1387 74 7 5 64 0 1 297 1 0 115 0 12 393 14 16 78 6 0 3 7 0 122 0 1 46 8 13 32 0 2 153 3 0 635 0 1 239 5 3 749 1 3 45 0 1 47 1 0 267 5 4 519 0 15 67 11 9 238 chain 21222 chr3 198295559 + 169646215 169646465 L1PA5 6144 + 5891 6136 54855 107 5 0 138 chain 13430 chr3 198295559 + 169651495 169651753 L1PB1 5432 + 5158 5404 64415 11 2 0 61 9 8 43 1 0 12 0 6 9 9 0 9 0 2 8 10 7 12 2 0 24 1 0 14 8 7 13 chain 560133 chr3 198295559 + 169679487 169685517 L1PA2 6032 + 1 6032 167 3897 0 1 2133 chain 206577 chr3 198295559 + 169705058 169707362 L1PA5 6144 + 3833 6137 9486 397 1 0 707 0 1 966 0 1 84 1 0 148 chain 191736 chr3 198295559 + 169716738 169718942 L1PA5 6144 + 3931 6143 10039 279 0 2 63 0 1 410 1 2 4 1 0 605 0 4 79 1 2 761 chain 83676 chr3 198295559 + 169731322 169732457 L1M1 2793 + 833 1956 20875 6 1 0 54 15 12 98 1 0 6 1 2 12 1 0 4 0 1 151 1 0 72 9 5 13 7 0 86 0 4 85 4 5 69 1 0 20 0 1 121 3 2 294 chain 250043 chr3 198295559 + 169733600 169736490 L1PA6 6164 + 3276 6159 8237 906 4 0 3 10 0 713 1 0 4 0 1 55 0 1 334 0 4 534 0 1 169 3 4 154 chain 62929 chr3 198295559 + 169736508 169737531 L1MA1 4479 + 3157 4190 25650 42 0 1 16 1 13 22 1 0 6 12 6 126 3 1 128 1 0 187 20 19 15 2 0 16 1 0 70 1 0 20 2 0 14 1 0 41 35 28 16 12 8 80 12 18 28 1 0 29 2 0 18 7 38 9 8 0 18 chain 7193 chr3 198295559 + 169764062 169764149 MER85 139 + 4 95 76964 43 0 4 44 chain 4584 chr3 198295559 + 169772229 169772278 tRNA-Val-GTY 66 + 0 49 87884 49 chain 23082 chr3 198295559 + 169878322 169878616 AluSp 311 + 1 311 52233 47 8 23 187 0 1 52 chain 6514 chr3 198295559 + 169902788 169902887 L1MB2 1706 + 794 890 79291 74 12 9 13 chain 4968 chr3 198295559 + 169925304 169925368 MER41B 635 + 482 547 85816 27 1 2 36 chain 8942 chr3 198295559 + 169963126 169963233 MER2 342 + 141 248 72683 107 chain 27784 chr3 198295559 + 170013968 170014383 Tigger3b 1229 + 207 630 45204 6 0 1 23 0 6 48 1 0 38 8 5 4 0 1 213 26 30 48 chain 48547 chr3 198295559 + 170024222 170024959 MER4E 760 + 0 753 30106 22 1 3 126 79 79 139 0 2 11 0 26 43 5 4 74 13 0 224 chain 31523 chr3 198295559 + 170032496 170032912 LTR7B 505 + 0 491 40721 108 0 10 57 0 38 12 3 27 26 0 2 42 0 1 42 1 0 23 0 1 102 chain 14676 chr3 198295559 + 170039975 170040189 L1PA8 5853 + 5642 5853 62703 27 11 10 11 1 0 50 2 1 19 1 0 44 0 1 48 chain 9967 chr3 198295559 + 170047576 170047811 L1PB3 3668 + 3368 3528 70490 20 4 3 87 81 8 17 2 1 24 chain 31335 chr3 198295559 + 170077419 170077864 LTR22A 463 + 8 463 40858 64 0 10 123 0 1 130 45 44 83 chain 5872 chr3 198295559 + 170078757 170078831 HERVK22-int 3844 + 3765 3844 81590 64 0 5 10 chain 34969 chr3 198295559 + 170078834 170079290 LTR22A 463 + 6 463 38039 77 1 0 29 12 15 225 1 0 111 chain 17781 chr3 198295559 + 170241902 170242116 AluSp 311 + 57 289 58917 18 0 18 196 chain 8310 chr3 198295559 + 170244781 170244878 HY3 101 + 0 99 74135 69 0 2 28 chain 5665 chr3 198295559 + 170328122 170328299 LTR12C 1709 + 837 976 82488 58 34 37 17 53 12 15 chain 2848 chr3 198295559 + 170371816 170371857 MER112 246 + 34 82 101252 27 0 3 8 0 4 6 chain 28585 chr3 198295559 + 170401792 170402095 AluYa5 310 + 0 302 43980 132 1 0 170 chain 15670 chr3 198295559 + 170408404 170409244 Tigger1 2417 + 1961 2240 61437 60 617 58 135 2 0 26 chain 18899 chr3 198295559 + 170489021 170489303 L1MA1 4479 + 3927 4190 57640 17 1 0 8 3 0 126 1 0 29 2 0 35 1 0 9 1 0 6 4 2 13 8 0 18 chain 24745 chr3 198295559 + 170511121 170511416 AluSp 311 + 0 301 49664 64 0 6 231 chain 2374 chr3 198295559 + 170517095 170517133 MIRb 242 + 167 215 104242 20 0 12 11 2 0 5 chain 62716 chr3 198295559 + 170561687 170562635 L1PB1 5432 + 4514 5427 25708 117 4 0 118 0 1 205 0 1 78 6 5 64 13 11 23 1 0 10 2 1 8 2 0 3 2 0 8 2 0 70 8 7 34 2 1 17 13 1 30 2 0 5 1 0 14 2 0 24 1 0 52 2 0 5 chain 6754 chr3 198295559 + 170636649 170636741 MER20 218 + 5 96 78461 85 1 0 6 chain 22009 chr3 198295559 + 170644299 170644656 THE1C 375 + 0 375 53822 46 63 79 17 0 4 26 2 0 14 0 1 163 1 0 25 chain 4288 chr3 198295559 + 170790009 170790062 MLT1C 463 + 402 455 89578 53 chain 82275 chr3 198295559 + 170804594 170805799 L1PB1 5432 + 4259 5420 21186 96 1 0 30 1 0 214 0 10 8 26 7 478 2 3 12 3 0 17 2 0 13 27 20 53 2 1 16 1 0 41 7 6 12 3 0 17 12 4 10 9 6 13 2 0 24 1 0 21 1 0 13 1 0 16 chain 9301 chr3 198295559 + 170813034 170813375 MLT1B 390 + 65 390 71911 19 180 164 10 3 0 5 0 3 7 5 6 86 1 0 25 chain 88304 chr3 198295559 + 170860076 170861080 LTR13 1007 + 0 1007 19986 304 1 0 77 2 3 451 0 3 169 chain 23905 chr3 198295559 + 170898322 170898688 THE1D 372 + 0 372 50935 157 62 67 89 0 1 58 chain 113344 chr3 198295559 + 170918285 170919812 THE1B-int 1605 + 0 1604 16625 118 1 0 4 0 1 263 9 73 20 1 2 5 1 0 12 11 12 227 20 18 32 22 21 112 1 10 131 0 6 111 1 0 315 0 1 110 chain 189051 chr3 198295559 + 170920177 170922856 L1PREC2 3366 + 227 2946 10161 5 1 0 11 3 2 12 3 1 28 2 0 32 0 1 74 8 7 65 6 3 184 0 4 211 8 10 433 10 20 13 0 1 123 0 40 263 1 4 304 0 3 13 0 1 140 0 1 211 1 0 172 7 10 86 0 3 34 3 1 46 9 8 43 1 0 4 71 56 10 4 2 24 chain 135846 chr3 198295559 + 170922964 170924528 SVA_C 1631 + 0 1631 13452 16 2 0 7 1 0 274 0 1 290 0 3 256 8 79 81 15 14 593 4 0 17 chain 15872 chr3 198295559 + 170947877 170948797 LTR12C 1709 + 955 1709 61197 28 1 42 12 668 361 41 0 101 79 7 6 84 chain 3315 chr3 198295559 + 170957632 170957674 MSTD 398 + 116 158 96878 42 chain 117762 chr3 198295559 + 171052085 171053612 THE1B-int 1605 + 1 1595 15923 103 4 6 155 3 7 89 0 12 59 1 27 284 11 24 118 7 10 128 0 2 491 1 6 73 chain 15984 chr3 198295559 + 171053622 171053939 THE1B 368 + 0 345 61043 44 46 61 34 0 4 25 1 0 30 42 52 95 chain 117752 chr3 198295559 + 171117978 171119314 L1PA4 6152 + 4175 5514 15926 176 0 4 851 7 1 91 0 4 91 1 0 65 0 2 54 chain 71274 chr3 198295559 + 171219567 171220401 L1PA7 6471 + 5635 6469 23706 834 chain 37826 chr3 198295559 + 171241734 171242170 L1PA5 6144 + 5701 6144 36186 214 0 2 209 2 7 11 chain 44818 chr3 198295559 + 171287842 171288333 L1PA2 6032 + 5543 6032 31689 476 2 0 13 chain 66717 chr3 198295559 + 171304275 171305014 L1PA4 6152 + 5406 6152 24768 515 0 2 218 0 5 6 chain 3777 chr3 198295559 + 171418377 171418422 L1MB7 1623 + 1370 1415 93010 45 chain 169475 chr3 198295559 + 171423096 171424985 L1PA4 6152 + 4252 6143 11128 66 0 1 981 0 1 842 chain 57725 chr3 198295559 + 171425908 171426556 L1PA5 6144 + 5487 6135 27040 648 chain 24728 chr3 198295559 + 171465143 171465434 AluSp 311 + 11 302 49681 291 chain 6620 chr3 198295559 + 171476661 171476735 L1PA16 3655 + 3126 3200 78899 74 chain 156383 chr3 198295559 + 171518000 171519954 L1PA8 5853 + 3848 5847 11981 472 3 5 87 5 14 266 8 38 203 1 0 54 0 4 14 5 4 362 0 5 145 0 3 40 1 0 46 2 0 38 1 0 17 0 1 13 1 0 61 2 1 19 1 0 87 chain 45775 chr3 198295559 + 171522465 171523015 MLT2A2 560 + 0 551 31179 204 0 1 206 1 0 38 0 1 101 chain 22755 chr3 198295559 + 171525804 171526067 AluSc8 310 + 40 306 52749 92 0 3 171 chain 26975 chr3 198295559 + 171550211 171550500 AluYa5 310 + 0 288 46301 132 1 0 156 chain 13155 chr3 198295559 + 171571989 171572203 L1PB1 5432 + 4908 5103 64845 75 0 2 10 1 2 5 1 0 12 0 2 34 23 0 53 chain 9301 chr3 198295559 + 171576683 171576788 LTR7Y 441 + 336 441 71910 105 chain 295681 chr3 198295559 + 171576788 171580453 HERVH-int 3825 + 0 3825 6957 212 0 11 309 5 0 38 65 0 9 2 1 24 28 0 14 1 0 12 4 1 60 1 21 17 2 1 49 1 0 133 0 3 311 15 0 228 0 2 225 8 35 1354 9 11 39 8 218 254 3 8 225 chain 28595 chr3 198295559 + 171581724 171582157 LTR7Y 441 + 1 441 43964 93 20 11 55 68 84 197 chain 539565 chr3 198295559 + 171625080 171631024 L1PA3long 6157 + 216 6157 1366 470 0 3 21 11 12 1317 6 0 287 1 0 234 0 1 136 1 0 3460 chain 14908 chr3 198295559 + 171633462 171633646 L1PA7 6471 + 6287 6470 62379 22 1 0 161 chain 4364 chr3 198295559 + 171639850 171639907 MLT2B1 522 + 465 522 89096 57 chain 15619 chr3 198295559 + 171685019 171685237 MER30 238 + 0 238 61508 89 0 1 4 3 5 10 5 22 107 chain 8574 chr3 198295559 + 171725097 171725190 L1PA5 6144 + 6042 6135 73508 93 chain 17542 chr3 198295559 + 171746463 171746732 LTR12C 1709 + 650 877 59192 27 41 0 160 1 0 40 chain 9254 chr3 198295559 + 171830628 171830803 L1MA5A 2387 + 2155 2296 72014 32 1 0 30 3 0 15 39 9 55 chain 111561 chr3 198295559 + 171857988 171859307 L1PA6 6164 + 4571 6162 16869 37 0 1 10 7 0 33 0 5 693 0 4 42 9 278 488 chain 3135 chr3 198295559 + 171885923 171886098 MLT1I 406 + 147 327 98497 25 124 129 26 chain 14155 chr3 198295559 + 171908502 171908716 MER44A 345 + 94 311 63373 7 0 10 7 4 0 38 0 3 11 1 0 7 1 0 65 4 0 69 chain 14327 chr3 198295559 + 171920109 171920287 L1MA3 4352 + 3738 3915 63154 42 1 0 135 chain 343212 chr3 198295559 + 171921428 171926223 L1PB1 5432 + 944 5422 6007 444 9 16 174 0 10 67 0 3 253 0 1 215 6 0 126 13 12 91 3 0 134 4 0 215 1 0 4 0 1 103 8 7 22 2 0 36 0 2 18 1 0 360 0 8 44 4 5 417 2 0 33 11 10 217 0 1 411 0 1 40 9 13 141 0 2 25 3 0 436 308 0 32 8 6 14 1 0 24 1 0 9 1 0 9 2 0 3 2 0 9 6 4 48 2 1 16 1 0 44 1 0 15 25 12 19 2 0 5 1 0 14 3 1 17 14 23 4 1 0 13 1 0 18 chain 28712 chr3 198295559 + 171968873 171969172 AluYa5 310 + 9 308 43772 299 chain 7440 chr3 198295559 + 171972110 171972203 MLT1A0-int 1658 + 29 118 76274 63 4 0 26 chain 6374 chr3 198295559 + 172001763 172001863 L1PB1 5432 + 5053 5147 79762 50 6 3 8 1 0 24 2 0 9 chain 15317 chr3 198295559 + 172001880 172002165 L1PB1 5432 + 5159 5420 61887 10 3 1 43 0 1 5 1 0 18 1 0 44 1 0 15 3 0 8 13 4 19 1 0 4 12 10 5 2 0 26 1 0 19 1 0 13 1 0 16 chain 2734 chr3 198295559 + 172028878 172028910 Tigger2b_Pri 1066 + 53 85 102091 32 chain 25357 chr3 198295559 + 172131114 172131411 AluSp 311 + 0 300 48691 91 0 3 206 chain 21030 chr3 198295559 + 172167663 172167956 MER1B 344 + 41 339 55081 216 29 34 48 chain 10215 chr3 198295559 + 172466595 172466703 L1PA4 6152 + 6028 6136 69981 108 chain 8531 chr3 198295559 + 172469867 172470001 L1PA8 5853 + 5721 5853 73621 19 2 1 13 8 7 92 chain 8879 chr3 198295559 + 172500525 172500629 L1PA2 6032 - 435 539 72271 104 chain 33933 chr3 198295559 + 172500629 172501009 L1PA2 6032 + 5640 6021 38761 241 0 1 139 chain 114121 chr3 198295559 + 172520810 172522207 L1PA8 5853 + 4452 5853 16539 308 0 1 9 4 7 207 10 0 18 0 5 77 0 2 119 0 1 91 0 6 261 1 0 44 2 0 62 0 1 7 2 1 49 0 1 11 2 1 19 1 0 93 chain 17987 chr3 198295559 + 172559599 172559848 AluSc 308 + 29 289 58668 68 1 0 143 17 29 20 chain 28720 chr3 198295559 + 172657937 172658315 MER41A 554 + 0 384 43757 305 9 10 24 0 1 12 4 8 24 chain 39955 chr3 198295559 + 172719657 172720542 HERVK14-int 1672 + 32 590 34695 9 1 0 49 1 0 47 5 4 157 359 36 232 6 5 19 chain 143531 chr3 198295559 + 172721664 172723439 HERV17-int 4347 + 13 3881 12803 14 1 0 49 7 6 31 2 0 10 24 23 151 1 0 30 0 430 455 0 1 128 6 7 129 5 0 583 0 1672 149 chain 23797 chr3 198295559 + 172826451 172826782 Tigger1 2417 + 1826 2164 51113 59 0 3 109 0 1 40 8 10 42 5 6 68 chain 13164 chr3 198295559 + 172860788 172860967 MLT1B 390 + 196 376 64833 153 9 10 17 chain 118753 chr3 198295559 + 172866601 172867986 LTR12C 1709 + 0 1709 15763 90 0 3 222 1 0 484 3 319 106 0 4 72 9 13 314 1 0 8 1 0 74 chain 125279 chr3 198295559 + 172879722 172881294 THE1B-int 1605 + 0 1605 14658 171 2 1 256 1 26 67 1 0 78 0 3 339 0 2 122 0 3 312 0 4 94 6 4 123 chain 19226 chr3 198295559 + 172883769 172884092 THE1C 375 + 13 329 57317 34 31 28 32 4 5 67 5 6 62 8 2 80 chain 27418 chr3 198295559 + 172947582 172947944 L1PA8 5853 + 5496 5853 45681 24 0 1 14 0 1 28 1 0 45 2 0 70 1 0 13 1 0 43 11 10 15 1 0 93 chain 24403 chr3 198295559 + 173020021 173020308 AluSq10 312 + 8 299 50166 117 1 0 104 0 5 65 chain 40035 chr3 198295559 + 173054261 173054743 L1PA8A 6298 + 5807 6290 34629 371 0 1 111 chain 115744 chr3 198295559 + 173072775 173074317 THE1B-int 1605 + 27 1605 16283 16 43 43 218 16 8 120 10 37 212 0 1 53 0 15 71 0 1 36 1 0 97 5 6 644 chain 18814 chr3 198295559 + 173119058 173119317 L1PA8 5853 + 5596 5848 57762 12 2 0 66 6 5 10 2 0 51 2 1 19 1 0 88 chain 237744 chr3 198295559 + 173147303 173150980 L1MA1 4479 + 477 4190 8528 32 0 1 38 4 0 204 12 17 21 4 0 7 10 14 75 1 0 50 10 5 51 11 97 281 0 2 44 0 8 455 45 20 42 13 14 86 0 3 7 0 5 34 40 51 23 3 0 9 9 0 123 0 1 34 1 2 27 0 1 17 29 24 90 1 0 34 0 3 64 11 7 68 1 0 103 2 0 33 1 0 50 10 12 78 0 14 27 16 14 25 5 4 57 3 2 70 2 0 18 4 0 39 0 3 34 1 0 12 13 8 6 1 0 112 3 0 124 1 0 6 2 0 124 13 11 60 1 0 25 2 0 16 10 5 59 8 7 19 2 0 14 1 0 88 1 0 5 8 5 121 6 5 22 2 0 37 1 0 9 1 0 4 1 4 13 7 0 18 chain 9901 chr3 198295559 + 173172790 173172898 L1PA5 6144 + 6029 6137 70613 108 chain 109546 chr3 198295559 + 173182531 173184028 THE1B-int 1605 + 0 1599 17117 429 1 26 82 0 1 150 23 24 69 15 16 320 19 15 127 7 6 49 30 23 57 1 87 118 chain 32683 chr3 198295559 + 173274054 173274782 MER48 407 + 0 407 39778 332 321 0 75 chain 191842 chr3 198295559 + 173275240 173278491 HERVH48-int 3304 + 206 3241 10029 51 55 35 4 1 0 66 7 3 4 1 0 72 1 0 12 6 0 11 12 6 82 1 0 7 3 1 57 45 32 14 1 0 4 3 1 67 3 1 43 2 0 26 2 1 70 25 17 55 3 5 57 2 0 6 6 5 21 1 0 14 2 0 18 22 17 21 2 0 5 1 0 16 1 0 19 2 0 27 1 0 16 2 0 5 11 6 4 1 0 122 1 0 11 1 0 9 1 0 217 1 0 90 1 0 278 1 2 8 2 1 243 4 3 18 2 0 70 1 0 8 5 4 47 1 0 181 1 4 44 1 0 22 0 4 9 5 0 27 8 6 13 4 1 30 2 0 19 2 0 8 152 114 19 3 0 5 3 1 8 2 0 25 16 8 6 1 0 15 9 7 6 1 0 45 6 3 68 60 44 72 2 0 11 77 53 22 chain 3429 chr3 198295559 + 173278495 173278531 HERVH48-int 3304 + 2526 2562 95835 36 chain 2057 chr3 198295559 + 173278540 173278571 HERVH48-int 3304 + 2570 2605 106024 22 0 4 9 chain 6445 chr3 198295559 + 173278576 173278685 HERVH48-int 3304 + 2605 2706 79533 31 4 2 13 3 1 30 2 0 17 2 0 7 chain 33543 chr3 198295559 + 173281514 173281973 MER48 407 + 0 407 39049 159 53 0 191 0 1 56 chain 534951 chr3 198295559 + 173381853 173388281 L1PA7 6471 + 0 6467 1621 411 0 2 104 6 5 439 3 1 388 0 1 230 0 1 480 0 1 97 0 5 354 0 2 60 0 1 23 1 5 28 1 2 729 3 14 101 1 2 518 7 6 1213 0 1 64 1 2 324 0 3 138 0 3 101 0 3 52 0 1 126 0 1 94 0 1 179 2 1 150 chain 29253 chr3 198295559 + 173444983 173445295 AluYa5 310 + 0 309 42960 13 3 0 296 chain 44391 chr3 198295559 + 173545579 173546091 L1PA7 6471 + 5946 6457 31887 105 1 0 406 chain 50654 chr3 198295559 + 173724592 173725187 L1PA5 6144 + 5543 6143 29325 307 0 1 138 0 8 33 4 0 113 chain 5955 chr3 198295559 + 173822459 173822613 Tigger4b 360 + 24 315 81258 8 8 0 20 8 126 39 30 51 32 0 6 9 chain 28569 chr3 198295559 + 173852079 173852384 AluY 311 + 5 311 43999 127 0 1 178 chain 27315 chr3 198295559 + 173862244 173862534 AluYa5 310 + 20 310 45808 290 chain 3559 chr3 198295559 + 174085848 174085892 MADE1 96 + 0 44 94757 44 chain 4618 chr3 198295559 + 174354977 174355036 L1MB5 1630 + 1553 1612 87709 19 0 1 28 1 0 11 chain 28866 chr3 198295559 + 174395587 174396006 MLT2A1 477 + 0 395 43529 128 5 5 6 0 1 21 12 9 73 18 0 142 4 0 10 chain 96886 chr3 198295559 + 174396006 174397226 HERVL-int 5654 + 2612 5654 18668 347 0 6 226 0 1 45 0 1805 373 0 4 30 0 1 6 0 1 105 0 1 20 11 14 57 chain 29077 chr3 198295559 + 174397226 174397614 MLT2A1 477 + 0 385 43226 169 4 1 50 3 4 133 4 3 25 chain 5001 chr3 198295559 + 174426449 174426506 MSTC 436 + 2 59 85651 57 chain 8915 chr3 198295559 + 174493247 174493594 MLT1B 390 + 109 390 72751 53 218 152 76 chain 21180 chr3 198295559 + 174494382 174494632 L1PA5 6144 + 5892 6144 54911 238 1 3 11 chain 41043 chr3 198295559 + 174532857 174533352 LTR10D 510 + 0 510 33938 74 0 13 37 0 1 106 1 0 38 1 3 174 0 1 41 1 0 22 chain 553421 chr3 198295559 + 174605174 174611325 L1PA3long 6157 + 0 6157 521 5 2 0 133 2 0 240 0 2 199 2 0 1160 0 4 749 0 1 766 0 4 1387 0 1 380 1 0 547 0 1 578 chain 7956 chr3 198295559 + 174648088 174648198 MER44A 345 + 78 201 74989 23 1 7 69 0 7 17 chain 75365 chr3 198295559 + 174706929 174707803 L1PA5 6144 + 5264 6142 22754 27 0 4 322 6 5 379 0 1 140 chain 179481 chr3 198295559 + 174744357 174746646 L1PA10 4194 + 1840 4148 10610 135 0 1 211 0 1 32 0 1 408 0 1 25 0 1 15 0 4 240 0 3 43 8 10 160 4 0 15 0 1 201 0 12 722 5 4 29 4 1 32 chain 27116 chr3 198295559 + 174801179 174801529 THE1B 368 + 2 366 46101 32 5 20 115 1 0 197 chain 84017 chr3 198295559 + 174837827 174838944 L1PB 1623 + 399 1484 20803 17 1 0 69 1 0 106 24 0 716 4 0 139 1 0 7 2 1 30 chain 182181 chr3 198295559 + 174925830 174927943 L1P1 4361 + 1103 3216 10484 331 1 0 119 0 2 154 0 1 591 5 1 76 0 2 836 chain 108244 chr3 198295559 + 175068997 175070171 L1PA3long 6157 + 4982 6156 17285 1174 chain 13940 chr3 198295559 + 175072688 175072836 L1PA4 6152 + 5991 6139 63688 148 chain 22437 chr3 198295559 + 175085649 175085920 AluSc 308 + 7 283 53219 41 5 10 225 chain 59135 chr3 198295559 + 175087230 175087924 SVA_B 1603 + 878 1603 26623 43 4 0 24 22 58 144 1 0 456 chain 209923 chr3 198295559 + 175115780 175118263 L1PA5 6144 + 3676 6138 9350 257 0 1 13 0 2 678 31 3 765 3 0 275 0 1 324 9 15 128 chain 3125 chr3 198295559 + 175125093 175125127 MER3 215 + 66 100 98575 34 chain 181217 chr3 198295559 + 175203671 175206151 L1PB1 5432 + 2541 5020 10541 167 8 7 127 2 1 438 0 4 15 0 1 80 7 0 101 9 13 232 10 0 25 13 14 91 0 2 103 1 0 180 7 13 45 4 7 366 1 0 5 0 1 46 4 0 4 0 1 181 6 7 202 chain 4244 chr3 198295559 + 175267507 175267555 MER57D 437 + 385 433 89857 48 chain 4723 chr3 198295559 + 175297049 175297211 MER58A 224 + 47 215 87118 28 91 97 43 chain 11755 chr3 198295559 + 175301293 175301427 L1PA7 6471 + 6328 6462 67298 134 chain 258585 chr3 198295559 + 175320700 175323501 L1PA2 6032 + 3230 6028 8009 1948 0 1 842 4 0 7 chain 2673 chr3 198295559 + 175385603 175385661 L1MA4 2864 + 2784 2834 102474 25 16 8 17 chain 27399 chr3 198295559 + 175393023 175393310 AluYb8 318 + 31 318 45708 287 chain 54715 chr3 198295559 + 175437179 175437765 L1PA2 6032 + 4096 4682 27968 586 chain 33028 chr3 198295559 + 175592532 175592899 L1PA3long 6157 + 5790 6157 39494 367 chain 6265 chr3 198295559 + 175609478 175609548 U4 144 + 0 70 80106 70 chain 38617 chr3 198295559 + 175678414 175678851 L1PA5 6144 + 5674 6111 35629 437 chain 17503 chr3 198295559 + 175714787 175714986 L1PA7 6471 + 5215 5414 59242 199 chain 36186 chr3 198295559 + 175827484 175827927 LTR7 482 + 0 475 37283 263 1 32 124 13 14 42 chain 309316 chr3 198295559 + 175827936 175831927 HERVH-int 3825 + 0 3825 6627 530 1 0 11 1 0 4 0 1 23 27 0 8 1 0 4 7 23 15 1 0 11 193 1 18 21 0 7 1 0 41 1 0 82 1 0 174 14 13 463 9 0 49 1 0 124 0 5 78 4 31 341 30 42 105 1 2 601 0 11 267 0 19 721 chain 705 chr3 198295559 + 175828605 175828652 HERVH-int 3825 + 631 698 94564 17 4 24 26 chain 36975 chr3 198295559 + 175835771 175836221 LTR7 482 + 0 482 36753 264 0 31 124 15 16 47 chain 34317 chr3 198295559 + 175843542 175843946 L1PA4 6152 + 5736 6143 38482 96 0 1 145 1 2 21 0 1 141 chain 8919 chr3 198295559 + 175886468 175886581 MER85 139 + 4 126 72743 86 0 10 15 1 0 11 chain 457895 chr3 198295559 + 175902803 175909116 L1PA5 6144 + 0 6086 4183 89 0 749 106 0 1 224 9 0 1144 7 6 454 5 7 327 0 2 375 974 0 16 0 1 456 6 0 384 0 4 233 3 0 49 0 3 552 0 2 740 0 1 76 1 2 83 chain 114765 chr3 198295559 + 175937192 175938678 LTR12C 1709 + 0 1709 16419 266 0 1 15 4 5 149 0 1 226 0 119 55 1 0 275 1 0 4 4 2 106 0 4 244 52 22 33 0 131 51 chain 6342 chr3 198295559 + 175965286 175965370 L1PA17 2846 + 2604 2686 79858 28 1 0 17 1 0 37 chain 129194 chr3 198295559 + 175967515 175969051 L1PA7 6471 + 4936 6470 14120 19 1 0 667 2 0 87 0 1 760 chain 539873 chr3 198295559 + 176016123 176022182 L1PA3long 6157 + 1 6157 1348 775 0 128 142 1 0 922 1 2 1834 2 3 1951 0 3 12 36 1 171 0 1 206 1 0 5 chain 323760 chr3 198295559 + 176061754 176065579 HERVH-int 3825 + 0 3825 6341 56 0 3 32 1 3 239 1 0 202 5 0 35 1 0 9 2 1 12 22 12 14 1 0 13 1 0 4 38 35 27 1 0 59 0 1 6 0 2 14 0 1 519 0 3 1509 0 1 280 0 3 275 0 7 438 0 1 9 chain 88506 chr3 198295559 + 176093289 176094393 L1PA7 6471 + 5318 6426 19945 184 0 2 120 0 1 83 1 0 89 0 1 509 16 17 102 chain 29222 chr3 198295559 + 176132928 176133241 AluYa5 310 + 0 310 43012 132 3 0 178 chain 25286 chr3 198295559 + 176163817 176164121 L1PA7 6471 + 6152 6457 48804 4 0 1 300 chain 100051 chr3 198295559 + 176164136 176165464 L1PB1 5432 + 3741 5078 18293 17 0 1 55 0 1 176 0 1 361 1 2 272 2 0 165 0 8 253 13 12 13 chain 5393 chr3 198295559 + 176221867 176221932 Charlie1a 1436 + 1070 1135 83732 65 chain 11769 chr3 198295559 + 176285117 176285314 MER2 342 + 82 279 67268 27 1 0 22 32 33 115 chain 27661 chr3 198295559 + 176363069 176363681 L1PB1 5432 + 4881 5409 45380 87 4 0 82 13 14 34 60 1 18 0 1 7 0 2 7 1 0 12 1 0 12 29 23 39 14 16 45 7 6 9 1 0 6 15 6 18 11 8 12 2 0 24 1 0 22 1 0 12 1 0 5 chain 26559 chr3 198295559 + 176457119 176457465 THE1B 368 + 7 368 46891 37 0 15 43 2 3 67 2 1 195 chain 371625 chr3 198295559 + 176537283 176542543 L1PB1 5432 + 22 5422 5626 34 0 1 17 4 3 164 1 2 4 1 0 161 4 0 144 18 11 87 0 1 230 1 2 5 1 0 63 6 4 234 5 13 191 10 19 15 0 4 12 0 6 236 0 1 54 8 28 101 1 2 41 0 2 154 9 10 37 16 116 36 4 5 223 14 8 87 1 5 171 10 11 42 0 1 4 1 0 18 7 6 72 11 15 96 2 1 4 0 1 65 3 4 325 1 5 147 0 1 151 1 3 87 0 4 53 4 5 198 0 1 125 6 8 231 0 5 57 0 1 111 1 2 179 0 1 297 3 0 13 5 0 22 1 0 8 1 0 12 16 10 52 18 16 34 11 10 16 3 0 6 23 12 10 13 22 24 1 0 21 1 0 13 1 0 18 chain 78298 chr3 198295559 + 176563315 176564364 MER11C 1089 + 7 1069 22027 239 0 9 62 0 4 65 1 0 146 72 67 72 0 1 18 0 4 5 1 0 31 7 8 125 0 1 56 1 0 144 0 1 4 chain 3983 chr3 198295559 + 176601172 176601222 L1PB1 5432 + 5170 5220 91564 50 chain 10331 chr3 198295559 + 176601224 176601397 L1PB1 5432 + 5221 5387 69733 16 1 0 44 1 0 15 2 0 6 1 4 21 2 0 5 1 0 14 2 0 24 1 0 17 chain 61710 chr3 198295559 + 176605309 176606051 L1PA7 6471 + 5707 6454 25943 655 2 6 5 0 1 80 chain 11413 chr3 198295559 + 176637501 176637705 MER30 238 + 0 232 67887 24 8 7 59 11 37 26 4 10 36 3 0 33 chain 78687 chr3 198295559 + 176640945 176641941 L1PA10 4194 + 3149 4143 21944 224 1 2 619 0 1 87 6 5 29 3 0 27 chain 5636 chr3 198295559 + 176651715 176651831 MER4E1 777 + 490 602 82623 23 8 8 17 2 0 6 12 10 48 chain 4529 chr3 198295559 + 176674954 176675008 MLT1A 405 + 38 92 88171 54 chain 275871 chr3 198295559 + 176675477 176680982 L1PA7 6471 + 2954 6468 7555 512 1 4 79 13 17 85 0 2 334 10 13 7 3 0 250 1 0 4 0 1 33 2010 0 265 3 5 268 5 0 68 0 16 102 13 7 71 0 1 422 14 9 92 1 0 343 0 1 87 0 1 16 0 3 108 0 3 285 chain 118420 chr3 198295559 + 176677013 176678616 L1PA7 6471 + 4503 6104 15814 16 1 3 49 1 0 7 0 1 376 7 5 244 1 2 223 1 0 192 2 0 140 0 2 23 0 3 5 3 0 8 1 0 4 38 39 52 6 5 19 0 1 177 2 0 5 chain 12415 chr3 198295559 + 176678616 176678760 L1PA7 6471 + 4092 4236 65361 144 chain 4014 chr3 198295559 + 176678761 176678810 L1PA7 6471 + 4236 4285 91347 49 chain 23509 chr3 198295559 + 176680982 176681303 L1PA8A 6298 + 5965 6290 50311 129 1 4 140 10 11 41 chain 550203 chr3 198295559 + 176705545 176711707 L1PA4 6152 + 11 6152 729 763 18 0 2915 2 0 2458 1 0 5 chain 3706 chr3 198295559 + 176764818 176764949 L1MC4a 1092 + 766 895 93577 45 70 68 16 chain 82728 chr3 198295559 + 176771938 176773005 MER11C 1089 + 0 1073 21080 250 0 1 62 0 4 69 1 0 146 47 46 13 6 4 93 0 4 10 1 0 35 0 1 127 0 1 54 1 0 142 0 1 10 chain 4474 chr3 198295559 + 176817679 176817828 MER58A 224 + 40 190 88474 39 82 83 28 chain 29405 chr3 198295559 + 176824179 176824488 AluYk12 309 + 0 309 42727 309 chain 9520 chr3 198295559 + 176826885 176827057 L1PB1 5432 + 5259 5413 71431 22 1 0 26 10 1 19 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 9 chain 514715 chr3 198295559 + 176827334 176833078 L1PA3long 6157 + 296 6157 2530 481 1 129 2207 4 1 118 0 4 710 0 1 1100 29 17 760 1 0 333 chain 466267 chr3 198295559 + 176861314 176866785 L1PA5 6144 + 1 5506 3955 119 0 14 73 3 5 388 6 7 562 9 0 1018 2 1 143 2 1 9 0 24 723 0 1 87 1 0 1165 0 4 417 0 1 524 1 0 219 chain 19021 chr3 198295559 + 176882294 176882511 AluYk4 311 + 72 289 57530 217 chain 2930 chr3 198295559 + 176884106 176884161 Charlie4a 502 + 414 469 100584 4 1 0 30 6 7 14 chain 6596 chr3 198295559 + 176891480 176891557 THE1B 368 + 291 368 78981 77 chain 116313 chr3 198295559 + 176893506 176895167 L1PB1 5432 + 3777 5420 16167 214 0 1 301 1 0 157 0 2 98 1 0 71 3 0 59 0 3 124 24 31 153 4 6 106 16 19 11 2 1 10 1 0 14 5 1 9 2 0 54 1 0 14 1 0 44 1 0 18 71 54 18 1 0 21 1 0 13 1 0 16 chain 150581 chr3 198295559 + 176924274 176925929 L1PA3long 6157 + 4496 6157 12312 676 10 14 964 0 2 5 chain 18702 chr3 198295559 + 176940407 176940656 L1PA8 5853 + 5608 5853 57896 62 21 19 54 1 0 17 1 0 93 chain 71111 chr3 198295559 + 176943725 176944771 L1PB1 5432 + 4241 5279 23740 144 3 2 53 5 6 180 6 0 143 3 0 38 6 14 282 1 2 9 3 0 20 1 0 12 2 1 11 5 1 9 20 23 29 2 1 15 1 0 43 chain 15976 chr3 198295559 + 176945614 176945929 MER1B 344 + 42 344 61054 33 56 52 89 4 0 49 29 24 55 chain 40096 chr3 198295559 + 177059700 177060247 MLT2A2 560 + 5 560 34594 10 0 4 43 17 18 116 17 16 338 0 4 6 chain 20044 chr3 198295559 + 177062872 177063138 AluSp 311 + 20 295 56320 187 2 20 61 9 0 7 chain 135052 chr3 198295559 + 177092925 177094960 L1PB1 5432 + 3427 5422 13542 20 4 0 31 0 1 167 0 2 65 10 1 220 0 1 29 20 21 477 2 0 16 2 0 75 33 0 10 0 33 32 14 11 37 0 3 26 0 2 7 9 8 130 0 2 207 0 8 34 17 11 16 5 4 26 4 0 8 6 4 43 9 7 14 1 0 17 3 0 22 0 1 5 1 0 5 33 22 18 3 1 5 1 0 13 3 1 24 1 0 23 1 0 8 0 2 7 3 0 8 1 0 4 chain 35016 chr3 198295559 + 177499172 177499580 L1PA6 6164 + 5754 6162 38007 408 chain 32927 chr3 198295559 + 177532035 177532484 MLT2A1 477 + 0 477 39567 139 29 34 20 1 0 202 8 32 50 chain 15894 chr3 198295559 + 177550289 177550628 L1PB1 5432 + 5114 5422 61162 24 1 0 6 1 0 12 18 12 52 2 1 11 5 4 43 2 1 16 24 12 13 3 1 10 1 0 14 2 0 13 0 1 5 1 0 5 1 0 21 1 0 13 1 0 18 chain 41283 chr3 198295559 + 177556702 177557258 MLT2A2 560 + 2 560 33796 195 4 1 99 19 21 74 0 1 118 0 2 47 chain 10107 chr3 198295559 + 177566782 177566985 MER1B 344 + 56 262 70185 25 50 55 59 9 7 60 chain 65290 chr3 198295559 + 177582840 177583655 L1PA8 5853 + 5046 5853 25108 209 0 1 310 1 0 42 2 0 67 5 4 13 5 2 46 2 1 19 2 1 92 chain 5571 chr3 198295559 + 177617025 177617094 MSTD 398 + 329 398 82924 69 chain 23685 chr3 198295559 + 177643204 177643496 AluSc 308 + 20 302 51295 98 1 0 161 9 0 23 chain 9953 chr3 198295559 + 177720554 177720687 HSMAR2 1300 + 1148 1292 70523 14 0 12 26 1 0 92 chain 3673 chr3 198295559 + 177734573 177734617 MER121 330 + 129 173 93792 44 chain 3899 chr3 198295559 + 177748011 177748054 MER53 195 - 128 171 92131 43 chain 44428 chr3 198295559 + 177759092 177759722 MER41B 635 + 2 633 31870 123 1 2 203 5 6 107 42 41 149 chain 33275 chr3 198295559 + 177799867 177800393 L1PA16 3655 + 2503 3069 39284 21 33 66 79 8 7 138 5 8 79 0 6 9 10 9 30 9 8 12 0 1 93 chain 13898 chr3 198295559 + 177852990 177853170 L1PA7 6471 + 6286 6467 63736 23 1 0 11 2 4 143 chain 6008 chr3 198295559 + 177856718 177856815 L1PB 1623 + 1356 1453 81043 48 12 13 29 1 0 7 chain 437103 chr3 198295559 + 177866130 177871790 L1PA8 5853 + 109 5853 4619 115 0 1 76 19 7 344 2 0 10 7 6 111 0 3 151 0 1 8 7 8 105 0 1 61 0 1 167 5 6 149 0 2 647 0 4 131 8 34 710 0 3 163 10 15 98 48 100 42 4 7 279 0 1 101 13 14 11 0 2 80 7 8 387 0 1 82 2 3 133 6 0 241 1 0 182 0 1 87 2 0 75 0 2 114 13 14 350 1 0 43 3 1 55 47 45 35 1 0 17 2 1 92 chain 335079 chr3 198295559 + 177908734 177913560 L1P2 5180 + 361 5178 6142 20 24 25 4 1 0 38 43 24 22 154 71 174 26 5 43 15 30 138 6 5 80 4 5 4 1 0 343 1 2 75 0 1 37 0 2 228 4 5 217 4 7 95 3 5 126 0 1 14 4 6 83 13 11 14 16 0 228 1 2 222 14 17 86 0 1 49 5 3 95 0 16 138 3 6 17 6 7 311 6 5 95 7 8 668 5 10 208 4 82 440 0 2 50 1 0 49 1 0 38 1 0 4 chain 36635 chr3 198295559 + 177914579 177915036 L1PA7 6471 + 6004 6461 36991 303 19 19 135 chain 34479 chr3 198295559 + 177997097 177997599 MLT2A2 560 + 0 560 38372 18 0 2 163 1 0 104 0 11 7 22 54 44 1 12 83 2 1 5 0 3 41 0 1 11 chain 9561 chr3 198295559 + 178129919 178130025 LTR12_ 688 + 582 688 71346 106 chain 265768 chr3 198295559 + 178207962 178211777 HERVH-int 3825 + 372 3825 7805 101 0 4 8 2 0 45 1 0 40 1 0 5 470 0 5 1 0 25 33 124 27 0 1 21 0 1 57 9 10 171 21 25 1044 16 15 992 0 3 255 5 0 6 4 10 41 37 38 245 0 2 34 6 11 87 chain 6623 chr3 198295559 + 178208192 178208279 HERVH-int 3825 + 485 570 78890 45 1 0 15 2 1 24 chain 2915 chr3 198295559 + 178208380 178208415 HERVH-int 3825 + 438 473 99861 35 chain 2961 chr3 198295559 + 178208593 178208625 HERVH-int 3825 + 534 566 100283 32 chain 31391 chr3 198295559 + 178214246 178214650 LTR7 482 + 0 474 40819 69 8 46 109 0 1 41 0 31 177 chain 24557 chr3 198295559 + 178235085 178235362 L1PA5 6144 + 5850 6127 49931 277 chain 34022 chr3 198295559 + 178241276 178241677 L1PA7 6471 + 6057 6459 38692 263 0 1 138 chain 3889 chr3 198295559 + 178254813 178254877 LTR41 747 + 242 340 92221 29 8 42 27 chain 42112 chr3 198295559 + 178265612 178266126 L1PA8A 6298 + 5172 5690 33289 312 1 0 82 0 2 31 0 3 88 chain 47786 chr3 198295559 + 178311803 178312363 MLT2A2 560 + 0 560 30367 560 chain 23321 chr3 198295559 + 178344512 178345054 L1PA13 3608 + 113 3336 51899 23 2 0 6 2 1 20 1 0 14 55 41 65 1 0 6 1 2 137 1 0 6 4 11 12 52 6 18 1 0 16 6 2748 28 2 0 63 chain 511071 chr3 198295559 + 178360816 178367289 L1PA7 6471 + 3 6468 2711 145 0 6 6 6 0 234 0 1 15 2 5 44 0 1 188 3 4 152 4 3 426 0 7 6 8 1 512 1 0 403 0 1 462 26 7 61 0 2 712 1 0 421 2 1 6 0 1 95 1 2 366 3 4 526 14 4 116 1 0 34 0 16 111 7 4 81 0 1 158 2 0 271 1 4 71 4 3 616 8 9 68 1 0 72 chain 3876 chr3 198295559 + 178394681 178394727 L1ME3A 1206 + 897 943 92311 46 chain 4430 chr3 198295559 + 178443299 178443353 MER45A 178 + 69 123 88735 54 chain 127928 chr3 198295559 + 178461154 178462719 THE1A-int 1579 + 0 1579 14292 63 0 6 152 0 6 50 0 1 83 7 6 214 1 3 58 3 2 639 2 3 195 1 0 25 0 1 72 chain 27632 chr3 198295559 + 178462719 178463071 THE1A 353 + 0 353 45417 49 0 1 60 1 0 190 0 1 52 chain 14278 chr3 198295559 + 178470328 178470498 L1PA8 5853 + 4618 4789 63223 127 0 1 43 chain 21288 chr3 198295559 + 178515798 178516080 L1PA16 3655 + 2557 2840 54785 80 0 1 37 2 1 61 6 7 96 chain 31643 chr3 198295559 + 178541752 178542230 LTR10F 562 + 0 560 40633 41 0 2 72 35 1 18 1 29 11 0 80 11 21 27 268 chain 523020 chr3 198295559 + 178576048 178582507 L1PA7 6471 + 0 6457 2134 244 8 11 6 0 1 140 1 2 619 43 21 96 10 8 164 0 1 293 19 10 17 0 2 924 7 8 70 1 2 67 0 4 386 0 4 116 0 1 309 1 0 303 0 1 49 0 1 149 3 0 248 0 2 18 8 10 112 0 2 585 8 9 605 1 2 12 1 0 209 0 6 282 1 0 151 1 2 34 3 4 135 chain 24488 chr3 198295559 + 178595428 178595803 THE1C 375 + 0 373 50050 87 3 4 69 5 4 15 20 20 41 2 1 109 1 0 23 chain 32059 chr3 198295559 + 178600951 178601348 L1PA7 6471 + 6067 6464 40302 254 3 2 126 0 1 14 chain 10271 chr3 198295559 + 178606453 178606677 MLT1A0-int 1658 + 1351 1645 69863 21 51 46 96 19 92 29 0 2 8 chain 6322 chr3 198295559 + 178636294 178636392 L1PB1 5432 + 5332 5424 79921 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 84760 chr3 198295559 + 178650533 178651565 L1PA7 6471 + 3932 4955 20669 523 0 1 152 21 1 50 0 10 286 chain 57469 chr3 198295559 + 178651566 178652250 L1PA7 6471 + 4955 5637 27112 593 4 3 70 1 0 16 chain 17522 chr3 198295559 + 178652250 178652474 L1PA7 6471 + 6242 6469 59215 67 4 5 142 0 2 11 chain 23419 chr3 198295559 + 178684545 178684837 AluSp 311 + 0 288 51729 132 14 10 146 chain 51340 chr3 198295559 + 178700900 178702435 L1PA5 6144 + 4628 6135 29103 617 12 0 385 14 0 496 2 0 9 chain 10521 chr3 198295559 + 178706894 178707010 L1PA7 6471 + 6345 6461 69377 116 chain 13375 chr3 198295559 + 178725306 178725552 L1PA17 2846 + 1317 1561 64503 75 45 45 85 0 1 5 11 8 25 chain 552558 chr3 198295559 + 178859954 178865979 L1PA2 6032 + 6 6032 576 1114 0 1 4745 5 0 7 0 5 154 chain 162763 chr3 198295559 + 178884392 178886862 L1PA13 3608 + 1137 3548 11559 368 3 7 288 27 0 23 35 8 47 1 12 13 1 2 31 1 0 8 1 0 80 4 5 6 1 0 43 0 2 70 23 22 45 0 3 7 12 9 25 3 15 4 0 1 62 2 0 82 5 6 9 0 1 81 5 6 90 1 0 95 9 8 411 1 0 28 1 0 73 0 2 5 1 0 33 2 0 63 1 0 20 3 0 12 0 1 18 1 0 7 4 2 47 2 0 5 7 5 15 1 0 18 26 18 14 1 0 4 23 14 12 chain 202269 chr3 198295559 + 178925647 178927960 L1PA5 6144 + 3808 6137 9626 380 0 1 431 1 0 121 0 15 471 0 1 909 chain 23056 chr3 198295559 + 178928749 178929111 THE1D 372 + 0 359 52284 56 11 1 61 0 8 67 9 3 42 2 8 84 8 7 22 chain 199464 chr3 198295559 + 178929121 178932365 L1PA14 3548 + 612 3456 9732 31 25 30 281 0 6 141 35 28 111 0 1 320 9 0 65 387 14 108 1 0 350 2 3 97 1 0 4 11 12 7 0 2 74 0 1 37 0 1 199 1 0 65 4 0 89 4 3 131 0 3 114 2 0 8 12 1 8 0 7 26 19 15 85 0 4 15 13 9 11 6 4 4 1 0 84 1 0 5 1 0 5 0 1 46 1 4 50 1 0 11 5 1 35 4 2 11 7 0 6 1 0 17 1 0 5 0 3 33 chain 7493 chr3 198295559 + 178952373 178952573 L1PB1 5432 + 5251 5422 76145 30 2 1 13 37 17 11 12 9 14 2 0 24 1 0 15 7 6 13 1 0 18 chain 27100 chr3 198295559 + 178974188 178974529 THE1B 368 + 0 356 46127 40 0 15 118 1 0 11 1 0 118 0 2 52 chain 12729 chr3 198295559 + 178985961 178986115 L1PA7 6471 + 3698 3853 65565 131 0 1 23 chain 127772 chr3 198295559 + 179032037 179033503 SVA_B 1603 + 55 1597 14310 31 2 3 804 0 83 38 1 0 442 8 1 140 chain 516901 chr3 198295559 + 179038594 179045035 L1PA6 6164 + 3 6160 2423 182 0 1 331 1 3 47 1 0 338 1 5 176 0 3 218 0 1 105 4 0 32 0 1 565 0 4 28 0 1 73 0 3 205 6 0 680 1 0 164 1 3 13 2 0 4 0 1 116 1 0 313 0 1 4 0 1 5 0 10 61 2 1 252 0 1 354 0 1 369 1 0 148 0 2 463 0 4 48 8 0 109 4 9 78 0 1 253 308 0 366 chain 329991 chr3 198295559 + 179047868 179052833 L1PB1 5432 + 505 5156 6217 46 19 22 120 0 4 69 4 3 615 65 61 125 5 7 357 0 6 122 0 1 260 0 12 30 322 0 53 0 1 91 1 0 215 0 8 28 0 3 6 9 8 64 3 0 159 10 9 136 18 0 47 0 1 347 2 1 122 10 0 52 8 5 130 0 1 82 36 1 27 0 10 287 8 11 5 3 0 92 0 5 46 7 34 138 0 2 35 2 0 81 1 0 204 4 0 98 8 10 22 10 25 36 10 3 7 1 0 25 1 0 6 1 0 12 chain 41050 chr3 198295559 + 179054590 179055103 LTR17 781 + 255 781 33933 44 10 0 27 1 2 390 1 23 40 chain 352920 chr3 198295559 + 179055133 179059514 HERV17-int 4347 + 279 4347 5882 346 3 0 411 6 9 308 0 1 123 15 8 475 0 1 536 0 1 155 3 0 274 7 12 397 0 5 35 0 3 80 0 2 158 320 0 160 1 0 568 chain 26720 chr3 198295559 + 179059828 179060155 LTR17 781 + 0 326 46659 118 0 9 33 0 1 135 1 0 3 10 0 27 chain 4101 chr3 198295559 + 179080187 179080257 MLT1F1 559 + 363 441 90769 19 12 20 39 chain 21777 chr3 198295559 + 179090614 179090897 L1PA16 3655 + 2387 2669 54125 74 0 9 4 9 0 37 1 0 158 chain 133639 chr3 198295559 + 179119520 179122100 SVA_F 1814 + 335 1814 13677 546 1000 0 17 3 1 48 0 15 215 3 0 10 1 0 25 110 0 602 chain 17344 chr3 198295559 + 179120075 179120341 SVA_F 1814 + 888 1121 40534 9 0 1 50 3 18 26 49 0 129 chain 4177 chr3 198295559 + 179120163 179120212 SVA_F 1814 + 1119 1168 57621 49 chain 34468 chr3 198295559 + 179120341 179120738 SVA_F 1814 + 881 1291 38382 17 2 1 48 1 16 311 1 0 17 chain 20625 chr3 198295559 + 179120738 179121061 SVA_F 1814 + 1116 1291 39010 56 147 0 102 1 0 17 chain 3108 chr3 198295559 + 179120794 179120881 SVA_F 1814 + 932 1034 50520 15 0 15 72 chain 3360 chr3 198295559 + 179120899 179120939 SVA_F 1814 + 890 930 95035 40 chain 8845 chr3 198295559 + 179121388 179121478 SVA_F 1814 + 1036 1126 68079 90 chain 31684 chr3 198295559 + 179210921 179211382 Tigger2b_Pri 1066 + 0 464 40590 85 1 0 25 43 47 307 chain 12452 chr3 198295559 + 179282345 179282542 L1M1 2793 + 2499 2685 66065 9 0 1 37 1 0 16 20 12 7 0 1 46 1 0 46 3 0 11 chain 19503 chr3 198295559 + 179285123 179285554 L1MA3 4352 + 3785 4192 57020 40 0 8 9 19 18 39 17 18 51 2 0 85 97 66 13 1 2 58 chain 6866 chr3 198295559 + 179331013 179331103 L1MC3 1789 + 1095 1210 78079 16 0 25 74 chain 10139 chr3 198295559 + 179343239 179343408 MER30 238 + 57 236 70127 46 31 35 14 0 6 78 chain 4819 chr3 198295559 + 179356434 179356539 MER21C 908 + 584 838 86606 37 31 180 37 chain 7231 chr3 198295559 + 179464091 179464175 MER4B 649 + 0 84 76857 84 chain 7500 chr3 198295559 + 179470779 179470897 Tigger3b 1229 + 621 737 76131 82 16 14 20 chain 27196 chr3 198295559 + 179478707 179479119 MSTA 426 + 0 426 45969 99 5 6 25 23 29 79 4 3 59 10 18 108 chain 21002 chr3 198295559 + 179485969 179486238 AluSg7 307 + 27 298 55117 104 0 1 69 3 4 93 chain 25605 chr3 198295559 + 179517068 179517471 LTR7 482 + 0 474 48309 31 46 84 109 9 41 154 13 14 41 chain 274199 chr3 198295559 + 179517482 179520898 HERVH-int 3825 + 0 3825 7598 333 1 0 31 1 2 107 15 17 31 10 9 13 0 71 11 7 145 9 1 0 408 7 0 42 15 0 125 0 7 211 5 0 434 0 4 205 0 4 236 1 2 229 0 1 50 2 0 134 0 2 247 0 210 495 chain 25398 chr3 198295559 + 179522080 179522477 LTR7 482 + 0 477 48624 50 27 65 33 0 1 4 1 0 58 0 11 26 1 31 136 17 18 44 chain 3153 chr3 198295559 + 179544918 179544953 MSTC 436 + 401 436 98338 35 chain 27379 chr3 198295559 + 179547056 179547659 L1M1 2793 + 618 1123 45729 17 80 26 10 0 2 29 106 74 21 8 1 35 2 0 6 1 0 56 3 1 5 1 0 102 1 0 120 chain 6097 chr3 198295559 + 179605693 179605787 ORSL 269 + 161 260 80741 37 8 13 49 chain 40355 chr3 198295559 + 179627199 179627674 LTR15 485 + 6 484 34410 120 1 0 150 4 8 200 chain 25685 chr3 198295559 + 179675919 179676261 THE1C 375 + 0 340 48192 37 1 0 149 0 1 41 13 9 22 0 2 79 chain 18741 chr3 198295559 + 179677301 179677565 AluSp 311 + 0 267 57855 22 0 1 29 27 29 186 chain 3887 chr3 198295559 + 179782191 179782236 MER53 195 - 32 77 92230 45 chain 5178 chr3 198295559 + 179805275 179805341 MER53 195 + 0 66 84779 66 chain 57545 chr3 198295559 + 179816073 179816738 L1PA7 6471 + 5788 6461 27092 188 0 7 148 0 1 329 chain 4221 chr3 198295559 + 179834783 179834893 MLT1C 463 + 0 111 89998 20 47 48 43 chain 28130 chr3 198295559 + 179863835 179864189 THE1B 368 + 0 368 44668 40 0 15 110 8 7 196 chain 19496 chr3 198295559 + 179864189 179864785 L1MA8 2339 + 1794 2333 57028 29 21 17 35 49 51 8 2 0 21 6 0 6 4 10 34 5 4 108 28 4 43 3 0 19 137 110 7 0 2 31 chain 9205 chr3 198295559 + 179869900 179870015 MER57B1 401 + 28 143 72117 115 chain 3737 chr3 198295559 + 179885670 179885947 MLT1C 463 + 170 463 93346 25 2 0 10 204 220 28 0 2 8 chain 3243 chr3 198295559 + 179923462 179923502 MER5A 189 + 32 72 97543 40 chain 28944 chr3 198295559 + 179994614 179995007 MLT2A1 477 + 0 397 43415 31 1 6 132 4 1 11 0 1 22 20 21 172 chain 470627 chr3 198295559 + 179995303 180000925 HERVL-int 5654 + 0 5654 3838 379 7 10 289 8 7 69 0 2 147 1 16 858 0 1 275 0 11 86 0 3 1993 5 6 461 15 1 284 6 10 105 0 1 204 1 0 27 8 9 94 0 4 191 0 1 51 0 1 58 chain 35303 chr3 198295559 + 180000925 180001424 MLT2A1 477 + 0 477 37824 169 4 1 52 5 6 157 10 0 13 7 1 7 1 0 7 2 0 7 4 3 54 chain 145484 chr3 198295559 + 180042247 180043842 L1PA3long 6157 + 4562 6157 12658 1595 chain 26099 chr3 198295559 + 180055905 180056203 L1PA4 6152 + 5849 6148 47575 48 0 1 250 chain 2610 chr3 198295559 + 180077380 180077446 L1MCb 1641 + 558 623 102929 17 23 22 26 chain 59724 chr3 198295559 + 180088621 180089331 L1PA7 6471 + 5755 6466 26455 558 0 1 82 12 11 50 0 1 8 chain 3084 chr3 198295559 + 180095387 180095449 MADE2 80 + 0 63 98941 23 14 15 25 chain 125426 chr3 198295559 + 180103698 180105331 L1PA11 4918 + 2900 4507 14641 114 12 24 374 3 0 248 1 0 70 1 0 277 28 0 58 0 2 260 1 0 6 4 0 60 13 14 68 3 1 12 1 0 19 chain 19729 chr3 198295559 + 180123168 180123505 THE1C 375 + 0 335 56752 19 1 0 60 6 7 41 0 17 9 20 0 19 6 7 8 1 0 7 3 4 12 0 3 5 3 0 117 chain 25428 chr3 198295559 + 180130862 180131214 LTR7B 505 + 0 505 48588 105 0 10 51 18 119 26 1 42 64 0 2 20 4 3 63 chain 73909 chr3 198295559 + 180170071 180170888 L1PA3long 6157 + 5343 6157 23118 809 3 0 5 chain 15894 chr3 198295559 + 180231221 180231447 MER61-int 3695 + 1980 2208 61166 69 14 11 77 1 2 16 0 4 49 chain 62479 chr3 198295559 + 180237274 180237972 L1PA4 6152 + 5452 6151 25758 365 0 1 333 chain 66001 chr3 198295559 + 180260987 180262091 L1MA1 4479 + 3074 4148 24961 41 0 3 22 1 2 10 3 1 25 9 5 57 12 11 12 5 0 75 26 29 14 0 2 5 3 1 129 2 0 137 2 0 60 1 0 10 16 14 16 1 0 71 1 0 20 16 9 4 1 0 88 1 0 5 3 0 126 1 0 22 11 9 33 1 0 6 chain 28739 chr3 198295559 + 180292834 180293133 AluYk12 309 + 0 299 43728 299 chain 11746 chr3 198295559 + 180296961 180297093 L1PA5 6144 + 6012 6144 67317 132 chain 37191 chr3 198295559 + 180333557 180334059 L1PA8 5853 + 5354 5853 36617 40 0 2 123 0 3 40 1 0 47 2 0 70 1 0 7 17 15 39 2 1 19 1 0 93 chain 514358 chr3 198295559 + 180367357 180373522 L1PA6 6164 + 0 6162 2551 410 2 1 5 0 1 43 6 5 843 5 6 77 5 0 786 2 1 92 1 3 59 1 3 25 3 0 338 0 1 496 1 2 496 0 1 258 0 1 443 3 0 343 18 10 241 0 1 540 0 8 623 chain 135862 chr3 198295559 + 180374104 180375591 L1PA3long 6157 + 4668 6157 13447 710 1 0 643 0 3 133 chain 35364 chr3 198295559 + 180381254 180381635 L1PA3long 6157 + 5776 6157 37790 381 chain 249942 chr3 198295559 + 180425994 180428746 L1PA3long 6157 + 2318 5073 8239 1150 0 2 454 0 1 1148 chain 491473 chr3 198295559 + 180448471 180485850 L1PA3long 6157 + 2 6156 3387 6 4 0 952 0 2 1357 0 1 896 0 1 251 0 2 966 9178 0 487 0 1 437 22152 101 4 0 1 689 chain 56096 chr3 198295559 + 180483663 180484523 L1PA5 6144 + 614 1460 3916 133 0 19 186 25 0 133 0 1 83 9 0 291 chain 324443 chr3 198295559 + 180485859 180490833 L1PA5 6144 + 1460 6141 3916 664 0 3 182 1 0 4 0 1 37 308 0 17 0 1 411 0 1 395 1 0 103 1 0 1096 3 0 1001 0 1 91 1 0 4 0 1 11 0 1 510 1 2 37 0 12 95 chain 44929 chr3 198295559 + 180509704 180510261 MER41A 554 + 0 554 31616 322 0 1 202 4 0 29 chain 4335 chr3 198295559 + 180532269 180532356 MER52C 1267 + 861 920 89269 8 28 0 51 chain 3964 chr3 198295559 + 180539116 180539184 L1MA3 4352 + 4262 4327 91669 19 3 2 5 1 0 29 1 0 10 chain 139253 chr3 198295559 + 180540552 180542086 L1PA4 6152 + 4434 5969 13163 96 0 1 1438 chain 276089 chr3 198295559 + 180555994 180559921 L1P3 4156 + 0 3581 7547 98 2 3 96 1 0 43 22 21 59 1 0 88 0 1 485 5 6 139 11 1 320 0 1 197 11 8 43 2 4 47 13 0 97 1 0 411 0 1 154 0 1 133 321 0 59 0 2 184 0 3 111 11 0 335 0 2 326 41 42 60 chain 254822 chr3 198295559 + 180559933 180563093 L1P2 5180 + 4 3169 8116 146 2 1 96 1 0 211 0 1 49 1 0 7 1 0 132 12 1 139 1 0 6 1 0 624 7 5 7 0 2 251 0 2 135 0 1 505 1 0 121 5 9 32 0 1 37 0 1 254 6 10 243 0 9 127 chain 28755 chr3 198295559 + 180567377 180567680 AluYg6 310 + 0 303 43699 303 chain 42094 chr3 198295559 + 180578213 180578865 MER9a2 513 + 0 513 33294 13 0 1 44 0 4 254 155 11 186 chain 26936 chr3 198295559 + 180590720 180591066 MER1A 529 + 175 523 46356 231 0 1 49 4 5 62 chain 72024 chr3 198295559 + 180635804 180636945 L1PREC2 3366 + 1920 3046 23532 306 0 1 239 1 0 102 14 33 22 1 4 70 5 6 8 1 0 41 2 0 54 2 1 43 1 0 3 3 0 14 132 104 35 10 6 5 0 2 27 chain 6148 chr3 198295559 + 180652923 180653056 L1M3 994 + 171 313 80538 29 20 20 29 11 21 25 1 0 18 chain 62747 chr3 198295559 + 180675695 180676384 L1PA5 6144 + 4683 5373 25695 222 0 1 467 chain 61821 chr3 198295559 + 180676384 180677086 L1PA5 6144 + 5375 6074 25910 294 0 2 219 5 0 184 chain 3929 chr3 198295559 + 180681282 180681354 L1M3e 1964 + 41 111 91916 27 15 13 30 chain 37442 chr3 198295559 + 180703519 180703994 MER9a3 513 + 15 513 36446 91 4 5 145 1 0 9 3 21 24 0 4 121 1 2 76 chain 5305 chr3 198295559 + 180787089 180787156 MLT2A2 560 + 493 560 84175 67 chain 181742 chr3 198295559 + 180798917 180801696 L1PB1 5432 + 2822 5423 10509 17 6 8 92 0 17 27 12 32 56 1 5 203 23 24 63 189 3 154 0 2 164 0 5 42 15 3 8 7 0 217 0 1 56 1 0 38 0 5 416 0 6 142 4 0 329 11 12 134 1 2 9 3 0 28 3 2 14 16 10 52 2 1 16 1 0 44 1 0 12 72 55 22 1 0 34 1 0 15 1 0 4 chain 28882 chr3 198295559 + 180819194 180819604 L1PREC2 3366 + 2409 2817 43511 41 1 0 4 1 2 16 1 2 278 2 0 48 7 6 11 chain 20326 chr3 198295559 + 180876785 180877046 L1PB1 5432 + 4785 5060 55979 210 3 2 38 0 15 10 chain 4114 chr3 198295559 + 180877047 180877121 L1PB1 5432 + 5069 5142 90682 69 1 0 4 chain 14233 chr3 198295559 + 180877145 180877431 L1PB1 5432 + 5162 5423 63283 6 2 0 52 2 1 15 1 0 44 1 0 16 66 50 24 1 0 22 1 0 12 1 0 14 1 0 5 chain 28260 chr3 198295559 + 180890243 180890542 AluYg6 310 + 0 299 44470 299 chain 234513 chr3 198295559 + 180895487 180899830 MER61-int 3695 + 0 3678 8617 20 31 26 170 3 4 19 77 470 98 314 0 198 0 1 53 0 1 128 0 2 60 0 1 14 153 0 93 0 2 61 0 4 71 298 2 122 1 6 14 9 7 24 0 1 43 0 9 367 317 0 33 13 9 185 0 1 60 3 0 178 1 0 51 12 9 148 2 1 92 45 40 93 9 21 145 0 1 49 9 14 29 0 1 343 1 0 84 chain 3180 chr3 198295559 + 181011311 181011346 MSTC 436 + 0 35 98093 35 chain 12301 chr3 198295559 + 181079329 181079521 LTR7B 505 + 262 461 66288 28 1 0 22 33 41 108 chain 12041 chr3 198295559 + 181081533 181081721 LTR7B 505 + 262 457 66778 28 1 0 22 33 41 104 chain 53425 chr3 198295559 + 181119732 181120328 L1PA3long 6157 + 5553 6150 28419 435 0 1 161 chain 40471 chr3 198295559 + 181149522 181151201 L1PB1 5432 + 4746 5422 34333 56 4 5 69 0 4 31 1 0 192 982 0 13 5 10 12 1 0 6 1 0 12 2 0 3 2 0 9 3 1 51 7 6 10 1 0 43 2 1 10 28 18 15 2 0 9 1 0 14 2 0 24 1 0 22 1 0 12 1 0 14 1 0 4 chain 107350 chr3 198295559 + 181151330 181152500 L1PA2 6032 + 4859 6029 17401 1170 chain 75892 chr3 198295559 + 181159096 181159933 L1PA4 6152 + 3995 4832 22615 837 chain 10178 chr3 198295559 + 181231736 181231843 U6 107 + 0 107 70058 107 chain 8030 chr3 198295559 + 181274443 181274572 MER5A1 166 + 39 165 74809 6 5 0 70 8 10 40 chain 18852 chr3 198295559 + 181276763 181276993 L1PA7 6471 + 6236 6469 57711 185 0 4 31 1 0 13 chain 12333 chr3 198295559 + 181285797 181286564 MLT1B 390 + 21 385 66245 5 0 2 40 33 35 15 535 132 98 3 0 14 2 1 22 chain 144819 chr3 198295559 + 181306178 181307906 L1PA7 6471 + 4746 6470 12705 209 1 0 665 0 4 86 5 4 34 1 0 96 6 1 625 chain 4610 chr3 198295559 + 181309676 181309841 MER5A 189 + 23 189 87748 42 12 13 16 33 35 12 34 32 16 chain 6540 chr3 198295559 + 181336952 181337145 L1MC1 2226 + 1866 2047 79189 21 7 1 23 87 81 55 chain 38153 chr3 198295559 + 181407413 181407862 L1PA7 6471 + 6017 6467 35946 290 5 6 154 chain 60954 chr3 198295559 + 181440279 181441029 L1PA8 5853 + 5110 5853 26125 454 1 0 44 2 0 71 1 0 14 1 0 47 2 1 19 2 1 92 chain 317727 chr3 198295559 + 181479048 181482889 L1PA7 6471 + 1717 5588 6451 118 1 2 118 0 1 393 0 1 430 0 8 687 0 2 20 4 0 146 13 15 156 3 4 11 2 0 489 4 7 33 0 1 344 0 14 126 5 8 104 1 0 633 chain 127481 chr3 198295559 + 181510036 181511640 THE1B-int 1605 + 0 1605 14356 24 4 3 181 6 0 224 0 25 645 1 0 289 17 0 40 0 1 173 chain 18537 chr3 198295559 + 181511640 181511973 THE1B 368 + 0 355 58061 32 0 3 12 26 35 36 2 3 43 1 0 34 42 52 105 chain 21412 chr3 198295559 + 181528500 181529063 L1PB1 5432 + 4797 5324 54622 95 10 0 211 1 2 8 4 1 24 2 1 7 1 0 10 7 3 8 2 0 53 6 5 11 1 0 43 2 1 16 3 0 6 16 6 16 chain 36267 chr3 198295559 + 181668529 181669001 L1PA6 6164 + 5695 6160 37228 10 0 2 278 0 2 93 27 16 64 chain 22453 chr3 198295559 + 181779805 181780051 L1PA4 6152 + 5906 6152 53191 246 chain 22614 chr3 198295559 + 181789721 181789985 AluY 311 + 40 306 52962 91 0 2 173 chain 31717 chr3 198295559 + 181800471 181800884 L1PREC2 3366 + 444 858 40564 24 1 0 356 0 1 15 1 2 16 chain 7186 chr3 198295559 + 181840881 181840970 L1MC1 2226 + 1276 1365 76987 89 chain 7543 chr3 198295559 + 181938317 181938404 L1PA16 3655 + 3290 3377 76019 87 chain 12139 chr3 198295559 + 181970864 181970995 L1PA2 6032 + 5901 6032 66587 131 chain 15309 chr3 198295559 + 181994958 181995163 L1PB1 5432 + 4472 4681 61902 13 13 14 130 0 3 49 chain 15044 chr3 198295559 + 182088206 182088514 L1MA3 4352 + 3999 4282 62209 32 0 2 29 81 61 112 4 0 25 3 0 22 chain 2883 chr3 198295559 + 182100166 182100196 MER91C 135 - 18 48 100994 30 chain 5585 chr3 198295559 + 182112647 182112956 MLT1B 390 + 22 346 82876 18 225 240 66 chain 26495 chr3 198295559 + 182186514 182186820 L1PA7 6471 + 5666 5973 46986 37 0 1 269 chain 5360 chr3 198295559 + 182257743 182257908 MER121 330 + 30 185 83910 17 1 0 10 77 68 60 chain 15922 chr3 198295559 + 182304760 182304987 L1PA8 5853 + 5630 5853 61125 48 14 12 53 2 1 16 1 0 93 chain 137666 chr3 198295559 + 182345183 182346763 L1PA5 6144 + 4549 6132 13287 332 0 1 745 0 1 324 0 1 179 chain 62828 chr3 198295559 + 182419625 182420373 L1PA5 6144 + 5397 6143 25674 482 1 0 158 16 15 91 chain 554255 chr3 198295559 + 182426092 182432110 L1PA2 6032 + 2 6029 463 712 1 2 602 1 0 946 0 4 2914 0 4 832 0 1 10 chain 68743 chr3 198295559 + 182463095 182464014 THE1B-int 1605 + 648 1605 24275 353 5 19 53 1 2 12 0 20 48 23 31 21 0 1 177 14 8 212 chain 40382 chr3 198295559 + 182530861 182531457 L1PB2 3958 + 3249 3836 34397 21 0 5 32 2 0 54 1 0 16 9 6 56 2 0 91 1 0 87 1 0 64 2 1 71 2 0 15 14 13 55 chain 89215 chr3 198295559 + 182589458 182590448 L1PA3long 6157 + 5175 6157 19822 132 1 0 696 7 0 154 chain 20570 chr3 198295559 + 182619705 182619941 L1PA5 6144 + 5903 6139 55682 236 chain 16265 chr3 198295559 + 182711716 182711971 MER1B 344 + 89 344 60656 127 4 0 19 15 15 18 16 20 56 chain 69511 chr3 198295559 + 182712353 182713889 L1PA16 3655 + 2371 3590 24120 78 349 12 10 0 9 33 13 18 5 4 0 22 11 15 86 41 47 179 0 4 14 0 3 11 1 0 40 10 13 21 7 6 21 0 2 62 2 1 118 1 0 26 7 0 45 2 1 18 2 0 36 8 10 78 28 29 37 15 17 80 3 0 12 chain 21729 chr3 198295559 + 182740113 182740371 AluSc 308 + 5 263 54194 258 chain 6845 chr3 198295559 + 182867874 182867982 MER58C 217 + 81 205 78159 21 2 0 5 7 25 73 chain 5309 chr3 198295559 + 182927722 182927839 L1MB7 1623 + 920 1036 84153 44 40 39 33 chain 5562 chr3 198295559 + 182931000 182931075 L1MB7 1623 + 1055 1131 82971 11 0 1 9 1 0 29 0 1 25 chain 24886 chr3 198295559 + 183007370 183007667 AluSp 311 + 0 296 49463 37 1 0 259 chain 11082 chr3 198295559 + 183063584 183063716 MER41A 554 + 409 542 68441 21 0 1 111 chain 161157 chr3 198295559 + 183065585 183068123 MER41-int 2638 + 398 2638 11670 55 15 13 130 0 3 81 1 0 47 0 2 79 0 14 153 10 8 112 0 3 21 309 0 91 0 1 5 3 0 104 5 3 80 2 0 96 0 1 167 2 1 176 13 7 31 0 2 208 11 13 286 25 28 87 5 3 46 0 1 82 chain 37047 chr3 198295559 + 183068130 183068598 MER41A 554 + 0 466 36710 30 1 0 56 6 3 292 0 1 48 0 1 35 chain 29072 chr3 198295559 + 183081588 183082155 LTR18B 584 + 0 564 43230 70 25 26 34 1 11 60 5 0 8 0 2 17 34 40 118 94 77 5 1 0 19 0 1 76 chain 8709 chr3 198295559 + 183097170 183097262 AluYb8 318 + 212 304 73193 92 chain 118778 chr3 198295559 + 183100714 183102105 LTR12C 1709 + 0 1708 15753 309 0 1 4 1 0 259 3 0 219 1 319 6 2 0 107 0 4 480 chain 18468 chr3 198295559 + 183106103 183106363 MER65A 464 + 149 458 58135 166 1 0 14 6 56 73 chain 23292 chr3 198295559 + 183113299 183113575 L1PA5 6144 + 5865 6144 51942 37 0 1 46 0 2 193 chain 35136 chr3 198295559 + 183113942 183114450 LTR6B 557 + 0 557 37936 22 14 42 8 0 15 272 0 1 46 2 0 12 39 43 32 0 1 6 0 1 33 0 1 22 chain 15081 chr3 198295559 + 183149630 183149863 L1MA3 4352 + 4119 4345 62171 81 1 3 55 2 0 24 1 0 6 1 0 29 1 0 11 6 2 15 chain 92080 chr3 198295559 + 183169980 183171007 LTR5A 1029 + 0 1029 19326 116 0 3 31 1 0 879 chain 4036 chr3 198295559 + 183179013 183179059 MER20 218 + 96 142 91176 46 chain 11374 chr3 198295559 + 183247624 183247907 MER2 342 + 29 335 67960 16 77 99 115 40 41 35 chain 16175 chr3 198295559 + 183273660 183273872 Tigger3c 601 + 293 506 60782 179 1 2 32 chain 344592 chr3 198295559 + 183344456 183348567 L1PA7 6471 + 2335 6461 5993 296 0 2 9 1 0 42 0 1 204 6 13 1238 1 8 109 0 2 108 0 1 300 0 4 307 1 0 32 5 9 177 1 0 200 0 1 95 0 1 120 0 3 514 1 0 167 31 17 146 chain 4018 chr3 198295559 + 183352921 183352969 MER4D1 891 + 587 635 91316 48 chain 18813 chr3 198295559 + 183413391 183413652 LTR21B 408 + 0 272 57765 65 4 0 4 1 0 33 1 0 89 1 2 46 2 18 15 chain 4682 chr3 198295559 + 183444202 183444293 Tigger1 2417 + 2308 2416 87374 44 22 39 25 chain 28995 chr3 198295559 + 183548785 183549161 L1PA8 5853 + 5484 5853 43328 80 1 0 44 2 0 67 6 5 10 1 0 49 3 2 19 1 0 93 chain 5484 chr3 198295559 + 183582958 183583028 MER5A1 166 + 38 120 83295 14 0 12 56 chain 172334 chr3 198295559 + 183607366 183609787 SVA_E 1901 + 0 1901 10984 153 1 0 492 0 40 132 1 0 19 3 0 87 53 0 172 1 0 42 501 0 764 chain 3053 chr3 198295559 + 183608255 183608289 SVA_E 1901 + 1095 1129 68611 34 chain 24812 chr3 198295559 + 183608522 183608941 SVA_E 1901 + 839 1107 47546 87 150 0 169 1 0 12 chain 5627 chr3 198295559 + 183608609 183608667 SVA_E 1901 + 1098 1156 59498 58 chain 2316 chr3 198295559 + 183608941 183608967 SVA_E 1901 + 981 1007 100511 26 chain 931 chr3 198295559 + 183608991 183609023 SVA_E 1901 + 979 1011 63067 32 chain 15296 chr3 198295559 + 183620620 183620840 L1PA8 5853 + 5637 5853 61923 45 9 7 51 2 1 16 5 4 92 chain 10824 chr3 198295559 + 183667445 183667686 MER1B 344 + 109 344 68817 22 3 5 20 15 27 5 2 0 10 6 7 60 39 20 59 chain 117170 chr3 198295559 + 183739147 183740418 L1PA2 6032 + 4054 5333 16029 175 0 4 927 0 4 169 chain 54234 chr3 198295559 + 183740418 183741496 Tigger1 2417 + 584 1360 28138 170 1 3 304 11 18 5 0 1 14 344 32 229 chain 22497 chr3 198295559 + 183768710 183768978 AluSp 311 + 20 288 53126 268 chain 18319 chr3 198295559 + 183774252 183774502 MER1B 344 + 93 344 58341 174 18 19 58 chain 25334 chr3 198295559 + 183785204 183785509 AluSc 308 + 0 300 48737 17 1 0 54 2 0 89 1 0 97 1 0 43 chain 17852 chr3 198295559 + 183852901 183853183 L1MB2 1706 + 495 785 58824 6 0 7 29 27 26 77 6 8 137 chain 4468 chr3 198295559 + 183874683 183874733 Tigger1 2417 + 485 535 88504 50 chain 41945 chr3 198295559 + 183877228 183877755 Tigger1 2417 + 1716 2249 33394 186 0 3 157 0 1 80 0 2 104 chain 79184 chr3 198295559 + 183886551 183887521 LTR13 1007 + 0 1007 21809 73 2 0 308 1 6 30 0 22 217 1 11 74 0 1 73 0 1 191 chain 80633 chr3 198295559 + 183899415 183900463 MER11C 1089 + 0 1063 21508 246 0 9 62 0 4 65 1 0 146 47 46 98 1 0 14 0 4 5 1 0 38 0 1 127 0 1 54 1 0 84 0 1 58 chain 3191 chr3 198295559 + 183962050 183962087 MER20 218 + 54 91 97971 37 chain 6427 chr3 198295559 + 184001563 184001671 MER20 218 + 85 195 79580 13 18 19 39 0 1 38 chain 44892 chr3 198295559 + 184029887 184030410 L1PA5 6144 + 5615 6140 31644 250 13 15 260 chain 19778 chr3 198295559 + 184085337 184085813 MER92C 513 + 33 484 56704 17 148 123 23 8 7 59 10 11 48 7 6 124 9 10 23 chain 6892 chr3 198295559 + 184085823 184085900 L1P1 4361 + 15 92 77975 77 chain 3842 chr3 198295559 + 184121157 184121203 L1MB7 1623 + 1113 1159 92549 46 chain 22768 chr3 198295559 + 184356361 184356657 AluSp 311 + 0 300 52721 48 11 14 36 11 13 14 1 0 175 chain 28727 chr3 198295559 + 184365691 184366000 AluYa5 310 + 0 306 43749 132 3 0 174 chain 8277 chr3 198295559 + 184462476 184462614 MER2 342 + 85 227 74220 24 1 0 5 2 0 78 16 23 12 chain 6627 chr3 198295559 + 184653407 184653493 L1MEf 1413 + 1205 1291 78875 86 chain 3965 chr3 198295559 + 184727839 184727890 MER20B 722 + 196 247 91666 51 chain 10421 chr3 198295559 + 184797642 184798140 MER30 238 + 40 238 69573 51 332 34 13 9 10 44 3 0 46 chain 83212 chr3 198295559 + 184954730 184955693 LTR13A 966 + 0 966 20982 150 0 3 513 2 0 65 0 4 32 2 0 199 chain 43587 chr3 198295559 + 185058872 185059605 L1MA5A 2387 + 1587 2291 32391 29 21 23 70 0 4 40 14 10 26 1 4 50 1 0 149 1 0 41 1 0 18 9 12 32 4 0 9 7 6 45 2 0 60 3 0 15 28 0 27 7 11 23 chain 55351 chr3 198295559 + 185101841 185102703 L1PA13 3608 + 2638 3501 27762 6 1 0 137 15 16 66 1 7 4 1 0 206 6 10 42 8 13 14 1 0 110 6 4 60 2 1 26 1 2 12 4 5 12 1 0 5 2 0 47 2 0 5 2 0 20 5 4 19 3 0 10 chain 44296 chr3 198295559 + 185103655 185104220 MER61F 604 + 0 564 31954 357 1 0 92 1 2 81 1 0 32 chain 43798 chr3 198295559 + 185105202 185105713 MER9a2 513 + 0 513 32260 454 1 3 56 chain 343419 chr3 198295559 + 185106506 185110533 HERVK9-int 4720 + 54 4719 6006 4 1 0 66 1 0 7 2 1 19 0 1 10 2 1 140 1 0 1082 0 641 73 1 0 233 0 5 82 0 3 212 3 0 96 4 0 1714 0 1 274 chain 42179 chr3 198295559 + 185110550 185111029 MER9a2 513 + 13 493 33264 374 0 1 105 chain 59373 chr3 198295559 + 185120424 185121352 L1PB1 5432 + 4513 5427 26545 192 0 2 91 10 0 14 0 4 194 7 9 84 1 2 9 5 0 16 0 1 7 1 0 8 1 0 9 24 18 47 2 1 60 1 0 15 14 1 30 7 4 15 2 0 24 1 0 9 4 25 18 1 0 5 chain 3721 chr3 198295559 + 185181570 185181824 HERV16-int 1105 + 166 422 93469 30 129 130 26 50 51 19 chain 16264 chr3 198295559 + 185220307 185220580 Tigger3a 397 + 43 372 60660 28 19 68 15 0 1 157 27 29 11 0 4 16 chain 15118 chr3 198295559 + 185236182 185236361 MER1B 344 + 86 265 62134 179 chain 40943 chr3 198295559 + 185242039 185242574 L1PB1 5432 + 3673 4224 34005 60 18 33 195 1 2 29 1 0 158 2 1 54 0 2 17 chain 53895 chr3 198295559 + 185264636 185265388 LTR17 781 + 3 753 28256 56 1 0 102 1 0 18 1 0 57 3 2 89 1 0 135 4 0 39 1 6 199 6 7 15 6 7 18 chain 4323 chr3 198295559 + 185292476 185292583 MIRc 230 + 85 186 89330 20 47 41 40 chain 4825 chr3 198295559 + 185379829 185379891 MER5A 189 + 2 64 86565 62 chain 7670 chr3 198295559 + 185382581 185382722 MSTB1 431 + 64 203 75705 54 36 35 38 1 0 12 chain 17219 chr3 198295559 + 185386117 185386356 L1PA11 4918 + 4226 4456 59557 105 10 4 58 2 1 13 2 0 49 chain 13027 chr3 198295559 + 185559719 185559884 L1PA7 6471 + 6289 6457 65078 99 1 4 65 chain 3055 chr3 198295559 + 185758467 185758516 MIRb 242 + 144 192 99249 14 5 4 30 chain 55729 chr3 198295559 + 185799766 185800415 L1PA6 6164 + 5493 6141 27655 338 0 1 253 2 0 56 chain 83818 chr3 198295559 + 185800789 185802173 L1PA8 5853 + 4769 5847 20841 89 0 5 154 0 1 4 1 0 160 313 0 58 0 3 137 0 2 138 0 1 43 1 0 46 2 0 27 0 3 39 1 0 9 8 7 49 2 1 15 1 0 87 chain 5952 chr3 198295559 + 185840231 185840309 MER2 342 + 132 215 81268 6 0 5 72 chain 16892 chr3 198295559 + 185894287 185894490 AluSp 311 + 88 289 59922 44 2 0 157 chain 19965 chr3 198295559 + 185923007 185923276 AluSp 311 + 10 281 56446 22 2 0 61 1 0 44 11 17 77 1 0 50 chain 39161 chr3 198295559 + 185949807 185950258 LTR7 482 + 0 482 35243 246 1 32 204 chain 24125 chr3 198295559 + 186002566 186002949 THE1D 372 + 0 372 50614 52 42 23 90 7 9 13 0 6 30 4 0 6 8 12 131 chain 22653 chr3 198295559 + 186067160 186067462 AluSc 308 + 8 297 52894 100 0 1 174 11 0 7 3 0 7 chain 5542 chr3 198295559 + 186154772 186154900 MER5A 189 + 5 138 83065 62 47 52 19 chain 3399 chr3 198295559 + 186205862 186205900 SVA_B 1603 + 1562 1600 96073 38 chain 7618 chr3 198295559 + 186313560 186313668 MER5A1 166 + 11 120 75830 67 4 5 37 chain 41200 chr3 198295559 + 186341694 186342175 L1PA2 6032 + 5547 6028 33841 319 1 6 6 2 0 7 3 0 143 chain 103221 chr3 198295559 + 186379159 186380281 L1PA3long 6157 + 5032 6157 17930 464 0 3 658 chain 47814 chr3 198295559 + 186381112 186381815 MER50 708 + 0 708 30356 43 6 10 33 0 1 8 4 5 71 1 0 182 36 0 12 4 39 25 3 0 5 0 3 7 5 6 258 chain 5826 chr3 198295559 + 186442539 186442684 Charlie1a 1436 + 1 154 81802 20 61 69 64 chain 46187 chr3 198295559 + 186481284 186481997 L1MA4 2864 + 1328 2058 30966 147 4 10 171 32 40 126 10 9 4 0 1 69 16 18 33 0 1 59 8 9 5 1 0 28 chain 19028 chr3 198295559 + 186484583 186484869 L1MA2 4263 + 3837 4113 57520 118 12 10 93 14 7 40 1 0 8 chain 26329 chr3 198295559 + 186485470 186485744 AluYa5 310 + 29 303 47230 274 chain 19610 chr3 198295559 + 186530131 186530359 AluSp 311 + 83 311 56897 228 chain 5303 chr3 198295559 + 186536471 186536585 MER53 195 + 0 122 84184 36 1 3 21 14 18 21 7 9 14 chain 11273 chr3 198295559 + 186561820 186561980 L1MA10 1535 + 832 994 68124 83 10 12 67 chain 21918 chr3 198295559 + 186627540 186627775 L1PA4 6152 + 5781 6016 53947 235 chain 265388 chr3 198295559 + 186658172 186662056 HERVH-int 3825 + 0 3825 7814 92 8 0 7 0 8 219 11 10 133 1 0 4 0 1 2 0 114 13 7 1 14 1 0 13 3 0 25 1 0 35 7 6 65 0 3 13 0 1 452 15 0 200 388 40 130 1 0 180 15 0 520 0 1 282 1 0 4 0 1 481 9 11 39 8 218 72 39 39 149 0 2 225 chain 20606 chr3 198295559 + 186684670 186684965 L1PA8 5853 + 5564 5853 55625 45 2 0 68 23 21 42 2 1 19 1 0 93 chain 41641 chr3 198295559 + 186754864 186755450 MER4A1_ 611 + 2 607 33600 18 0 5 10 0 15 71 4 3 215 0 4 92 13 11 56 10 9 87 1 0 9 chain 5446 chr3 198295559 + 186835778 186835867 L1MA4 2864 + 2729 2809 83478 8 7 0 30 2 0 42 chain 7577 chr3 198295559 + 186859569 186859656 MSTD 398 + 311 398 75912 87 chain 169315 chr3 198295559 + 186863581 186865603 SVA_E 1901 + 14 1901 11136 131 2 0 672 128 0 110 4 0 29 5 0 11 0 12 700 27 19 203 chain 10097 chr3 198295559 + 186864386 186864514 SVA_E 1901 + 865 989 36165 62 4 0 62 chain 149977 chr3 198295559 + 186873283 186875073 SVA_D 2077 + 58 2077 12350 15 0 1 604 6 123 107 0 136 223 78 0 150 6 55 504 0 4 97 chain 2814 chr3 198295559 + 186874238 186874270 SVA_D 2077 + 1492 1524 63368 32 chain 2518 chr3 198295559 + 186874270 186874316 SVA_D 2077 + 1095 1140 54185 8 1 0 37 chain 75640 chr3 198295559 + 186893219 186894186 LTR5_Hs 974 + 0 974 22676 289 0 1 177 0 1 249 20 28 7 8 0 67 8 15 37 2 0 103 chain 14164 chr3 198295559 + 186895216 186895432 MER9a1 513 + 0 228 63361 24 0 23 12 30 19 150 chain 49515 chr3 198295559 + 186897056 186897697 LTR6A 649 + 0 643 29760 22 1 0 25 0 1 4 3 1 14 25 27 291 0 2 105 0 1 94 1 0 56 chain 27906 chr3 198295559 + 186913020 186913326 AluYa5 310 + 1 303 45027 126 4 0 176 chain 11912 chr3 198295559 + 186940510 186940703 MER30 238 + 25 232 66978 61 1 0 4 0 1 8 0 1 7 3 0 12 7 21 56 7 9 27 chain 23076 chr3 198295559 + 186992119 186992470 THE1D 372 + 0 372 52251 19 0 3 8 1 0 44 3 0 8 0 4 87 6 26 25 1 0 109 18 17 22 chain 49430 chr3 198295559 + 187010515 187011058 LTR6B 557 + 0 542 29792 50 1 0 492 chain 4656 chr3 198295559 + 187011698 187011752 LTR6B 557 + 329 383 87496 54 chain 36870 chr3 198295559 + 187023472 187023896 L1PA4 6152 + 5727 6152 36831 51 0 1 203 1 2 163 1 0 5 chain 28349 chr3 198295559 + 187135271 187135637 THE1B 368 + 0 368 44344 172 9 8 175 0 3 10 chain 399973 chr3 198295559 + 187150918 187156268 L1PB1 5432 + 83 5418 5155 109 5 12 39 1 0 8 0 1 4 0 7 145 2 0 209 2 1 133 0 7 219 0 1 417 71 54 274 1 0 69 5 1 118 0 4 61 6 18 502 1 0 234 0 1 110 6 7 43 0 3 19 15 16 23 1 2 22 1 0 289 0 1 453 7 13 198 0 3 241 4 0 452 3 0 13 1 0 464 5 0 14 3 0 17 1 0 13 27 20 53 2 1 16 1 0 44 1 0 15 3 0 7 17 8 16 27 22 21 1 0 22 0 3 9 1 0 14 chain 13359 chr3 198295559 + 187157736 187157892 MSTA-int 1630 + 1450 1606 64526 156 chain 56405 chr3 198295559 + 187182010 187182762 MER4E1 777 + 0 777 27452 20 1 2 139 0 4 166 1 20 83 1 2 100 21 29 106 8 0 106 chain 40881 chr3 198295559 + 187185154 187185626 LTR7Y 441 + 0 441 34040 165 31 0 276 chain 32354 chr3 198295559 + 187253558 187254005 L1PA8 5853 + 5410 5853 40074 58 5 9 81 8 7 43 2 0 71 1 0 14 1 0 3 1 0 44 2 1 19 1 0 93 chain 557193 chr3 198295559 + 187412123 187418152 L1PA2 6032 + 1 6031 289 256 1 0 225 0 1 5403 0 1 144 chain 39281 chr3 198295559 + 187422526 187423148 L1PA17 2846 + 2113 2711 35159 349 0 3 5 3 0 23 17 13 11 0 5 44 0 2 20 17 14 30 1 0 17 1 0 44 25 3 15 chain 3419 chr3 198295559 + 187449798 187449924 LTR37A 408 + 210 334 95911 27 70 68 29 chain 196730 chr3 198295559 + 187474315 187476948 MER4-int 2692 + 11 2692 9821 23 9 7 44 4 0 6 9 10 27 3 0 128 19 41 120 1 0 201 1 2 94 0 1 208 16 14 53 3 6 69 0 9 24 0 4 230 12 8 54 0 16 55 3 4 26 0 1 252 0 1 5 1 2 22 0 4 107 1 0 56 0 2 51 2 0 276 8 0 18 2 0 274 5 15 111 chain 27156 chr3 198295559 + 187486805 187487152 THE1A 353 + 7 353 46031 99 6 5 242 chain 59927 chr3 198295559 + 187487152 187487941 THE1A-int 1579 + 0 1579 26394 24 2 3 196 5 8 151 0 1 189 16 800 95 0 2 93 1 0 17 chain 2329 chr3 198295559 + 187490197 187490222 L1ME1 1623 + 671 696 104561 25 chain 3890 chr3 198295559 + 187493586 187493632 L1PBa 3878 + 1449 1495 92214 46 chain 25009 chr3 198295559 + 187495299 187495675 L1PB2 3958 + 3471 3838 49262 32 5 3 34 2 0 77 1 0 64 5 4 70 3 1 19 9 8 55 chain 173565 chr3 198295559 + 187512731 187514886 L1P2 5180 + 2 2183 10919 133 23 34 24 2 1 53 3 2 258 5 0 8 1 0 272 9 7 133 0 25 1231 chain 23940 chr3 198295559 + 187682787 187683061 AluY 311 + 33 308 50880 99 0 1 175 chain 18478 chr3 198295559 + 187803342 187803600 L1PA8 5853 + 5580 5853 58125 30 2 0 67 1 20 43 3 2 17 2 1 93 chain 2526 chr3 198295559 + 187809980 187810024 MLT1J1 437 + 135 181 103523 6 0 1 21 4 5 13 chain 177018 chr3 198295559 + 187860146 187862305 L1PA7 6471 + 4303 6459 10727 59 0 1 188 0 1 212 0 1 184 5 0 77 3 4 562 0 4 14 5 4 89 2 0 576 0 1 113 40 0 10 0 36 20 chain 553221 chr3 198295559 + 187862480 187868516 L1PA2 6032 + 0 6029 535 257 1 0 450 0 1 1477 0 1 857 1 0 2252 4 0 722 3 0 12 chain 549646 chr3 198295559 + 187890220 187896214 L1PA2 6032 + 0 6029 776 257 1 0 42 2 22 43 0 1 3291 0 1 159 0 1 1673 0 1 507 1 13 18 chain 10531 chr3 198295559 + 187924041 187924298 L1PB1 5432 + 5189 5424 69360 28 22 20 44 1 0 7 0 1 5 29 18 14 3 0 20 2 0 16 9 8 21 1 0 13 1 0 16 1 0 4 chain 5265 chr3 198295559 + 188012847 188013013 MLT1D 503 + 333 503 84362 8 1 0 7 17 18 23 54 58 56 chain 3533 chr3 198295559 + 188056114 188056195 MER65A 464 + 368 447 94997 25 29 27 27 chain 4214 chr3 198295559 + 188103863 188103914 MLT1D 503 + 442 493 90039 51 chain 4262 chr3 198295559 + 188172392 188172446 MIR 256 + 165 219 89750 54 chain 5708 chr3 198295559 + 188195641 188195762 MER33 330 + 95 213 82300 32 2 3 23 26 23 32 1 0 5 chain 21645 chr3 198295559 + 188411168 188411484 L1PB2 3958 + 3451 3775 54297 13 0 1 5 4 8 61 0 6 72 1 0 45 1 2 15 1 0 67 3 1 28 chain 91902 chr3 198295559 + 188444518 188445649 L1PA7 6471 + 5347 6469 19359 6 3 0 268 1 0 81 1 0 8 8 7 293 3 1 296 17 18 134 2 0 10 chain 5613 chr3 198295559 + 188517416 188517527 MSTB 430 + 1 126 82740 56 32 46 23 chain 76420 chr3 198295559 + 188544443 188545266 L1HS 6032 + 5208 6030 22453 810 1 0 12 chain 77626 chr3 198295559 + 188636044 188636933 L1HS 6032 + 2 889 22177 254 1 0 108 0 1 193 2 0 331 chain 324355 chr3 198295559 + 188636935 188640513 L1PA3long 6157 + 2565 6142 6329 2819 1 0 202 7 7 549 chain 53374 chr3 198295559 + 188669594 188670262 L1PA5 6144 + 5472 6143 28448 18 10 1 46 0 10 91 0 2 341 0 2 5 2 0 155 chain 23439 chr3 198295559 + 188830329 188830622 AluSc8 310 + 2 302 51695 16 0 5 100 2 0 9 0 3 42 0 1 124 chain 26383 chr3 198295559 + 188838624 188839021 L1PA8 5853 + 5462 5853 47143 102 1 0 46 2 0 65 9 4 10 1 0 4 17 16 34 2 1 16 2 1 77 0 6 9 chain 20869 chr3 198295559 + 188839626 188839891 AluSc5 308 + 34 294 55292 84 5 0 176 chain 23420 chr3 198295559 + 188880884 188881158 AluYk4 311 + 36 300 51727 82 10 0 182 chain 32646 chr3 198295559 + 188885956 188886311 L1PA3long 6157 + 5802 6157 39809 355 chain 8433 chr3 198295559 + 188934865 188934963 MER30 238 + 138 236 73837 98 chain 103427 chr3 198295559 + 189006940 189008059 L1PA2 6032 + 4912 6031 17894 1119 chain 243404 chr3 198295559 + 189049850 189053069 L1PB1 5432 + 2234 5417 8393 260 6 0 392 1 4 352 1 0 302 6 5 165 0 2 9 23 13 174 0 1 679 0 1 16 11 12 352 0 1 126 4 3 14 5 10 7 1 0 13 16 11 11 7 5 37 0 1 8 2 1 16 1 0 43 1 0 16 3 0 7 18 9 15 8 5 14 2 0 24 1 0 21 1 0 13 1 0 9 1 0 4 chain 13125 chr3 198295559 + 189059789 189059949 L1PREC2 3366 + 1873 2040 64885 76 0 7 84 chain 19698 chr3 198295559 + 189069858 189070101 AluSc 308 + 61 299 56787 89 3 0 144 2 0 5 chain 20747 chr3 198295559 + 189113690 189113915 L1PA3long 6157 + 5919 6144 55438 225 chain 21514 chr3 198295559 + 189119500 189119868 THE1C 375 + 0 375 54489 18 2 0 17 69 75 57 0 1 16 2 3 107 0 2 53 1 0 26 chain 3255 chr3 198295559 + 189128452 189128501 MER53 195 - 102 157 97426 18 2 8 29 chain 7063 chr3 198295559 + 189332350 189332438 LTR45C 530 + 0 88 77396 88 chain 59669 chr3 198295559 + 189422578 189423265 L1P1 4361 + 3643 4328 26470 505 1 0 157 1 0 23 chain 62344 chr3 198295559 + 189444584 189445282 L1PA4 6152 + 4646 5343 25788 655 1 0 42 chain 23422 chr3 198295559 + 189471476 189471775 AluSp 311 + 8 305 51721 268 8 6 23 chain 33726 chr3 198295559 + 189485668 189486097 L1PA7 6471 + 5992 6459 38900 131 1 20 120 0 1 20 19 37 138 chain 13593 chr3 198295559 + 189492737 189493054 L1PB1 5432 + 5126 5420 64177 12 8 6 13 6 2 9 2 0 19 0 1 32 2 1 15 1 0 45 1 0 13 40 33 5 1 0 14 2 0 24 1 0 22 1 0 11 7 6 11 chain 100039 chr3 198295559 + 189519934 189521022 L1PA3long 6157 + 5067 6157 18297 239 0 1 516 0 1 333 chain 36920 chr3 198295559 + 189560832 189561239 L1PA5 6144 + 4251 4658 36795 407 chain 29153 chr3 198295559 + 189584316 189584642 L1PA5 6144 + 5818 6144 43116 326 chain 103037 chr3 198295559 + 189595942 189597160 LTR12C 1709 + 0 1708 17946 126 0 1 156 0 9 10 9 0 348 0 485 89 0 4 480 chain 116637 chr3 198295559 + 189612556 189614107 THE1A-int 1579 + 1 1566 16115 11 2 3 154 2 1 5 0 1 312 1 3 172 3 4 4 1 0 448 0 11 200 12 11 19 15 16 190 chain 26067 chr3 198295559 + 189614119 189614482 THE1A 353 + 0 353 47630 110 1 0 92 1 0 94 19 11 46 chain 20758 chr3 198295559 + 189650372 189650737 THE1C 375 + 0 363 55423 23 3 1 39 29 30 49 0 4 33 22 19 129 6 5 18 1 0 13 chain 38867 chr3 198295559 + 189650765 189651257 THE1C-int 1605 + 18 518 35455 338 0 1 83 5 12 66 chain 17958 chr3 198295559 + 189757687 189758015 MER50 708 + 7 309 58694 42 1 0 4 2 0 5 24 16 30 41 29 42 3 1 124 1 0 9 chain 13750 chr3 198295559 + 189850591 189850738 L1PA4 6152 + 6005 6152 63946 147 chain 26761 chr3 198295559 + 189987192 189987501 AluSp 311 + 0 304 46598 120 5 0 184 chain 38623 chr3 198295559 + 190026251 190026767 MER41A 554 + 0 518 35625 54 6 0 6 1 7 26 0 1 302 1 2 120 chain 4892 chr3 198295559 + 190027591 190027678 MADE1 96 - 1 94 86192 30 22 28 35 chain 16579 chr3 198295559 + 190066278 190066634 L1PB1 5432 + 5106 5427 60285 8 1 0 24 1 0 9 2 1 10 15 9 52 1 0 18 1 0 40 46 32 18 2 0 5 1 0 14 2 0 24 1 0 21 1 0 9 5 4 18 2 0 5 chain 18013 chr3 198295559 + 190089166 190089375 L1PA5 6144 + 5931 6140 58640 209 chain 43674 chr3 198295559 + 190133735 190134288 LTR6B 557 + 1 557 32336 50 2 0 308 3 5 37 0 2 44 2 0 34 12 13 6 0 1 33 0 1 22 chain 26632 chr3 198295559 + 190144599 190144995 LTR7 482 + 0 470 46789 69 8 46 109 0 1 41 8 40 59 1 2 52 12 14 37 chain 288283 chr3 198295559 + 190145009 190148539 HERVH-int 3825 + 0 3825 7187 22 1 3 15 0 11 38 1 8 372 1 0 4 0 1 56 1 0 40 2 1 9 1 0 9 1 0 14 17 49 4 1 0 42 2 1 80 1 0 447 15 0 138 0 16 305 4 31 291 0 4 286 0 1 136 0 3 633 9 11 39 8 218 102 3 0 5 1 4 144 5 7 225 chain 77570 chr3 198295559 + 190161568 190162605 MER11C 1089 + 0 1055 22187 246 0 9 62 0 4 16 0 3 46 1 0 66 1 0 80 55 54 89 1 2 13 1 5 5 1 0 37 0 1 127 0 1 54 1 0 135 chain 86479 chr3 198295559 + 190269534 190270516 L1PA4 6152 + 5168 6151 20329 938 0 9 24 5 0 7 3 0 5 chain 21681 chr3 198295559 + 190362247 190362648 LTR8 732 + 332 732 54253 51 122 121 228 chain 29324 chr3 198295559 + 190370639 190371031 MLT2A1 477 + 0 399 42840 168 7 4 140 0 1 59 4 13 14 chain 4672 chr3 198295559 + 190420460 190420524 L1MA8 2339 + 1998 2061 87432 10 2 1 52 chain 65589 chr3 198295559 + 190437534 190438254 L1PA3long 6157 + 5433 6155 25057 550 1 3 169 chain 27409 chr3 198295559 + 190438908 190439203 AluYd8 298 + 1 296 45689 295 chain 137367 chr3 198295559 + 190472664 190474210 SVA_D 2077 + 0 2077 13311 11 3 0 531 0 80 64 0 40 182 0 312 83 0 98 575 0 4 97 chain 29109 chr3 198295559 + 190553778 190554088 AluYa5 310 + 0 309 43173 97 1 0 212 chain 5958 chr3 198295559 + 190678329 190678427 LTR9B 643 + 534 630 81240 54 17 15 27 chain 137159 chr3 198295559 + 190682033 190684060 HUERS-P3b-int 2065 + 15 2031 13324 20 6 18 41 3 0 42 9 14 27 0 2 126 9 10 44 1 0 220 0 1 106 4 0 67 0 1 4 9 8 10 1 0 45 8 7 28 2 1 86 0 1 235 1 0 41 0 1 126 0 1 41 1 2 79 2 1 44 6 4 20 5 7 8 2 0 42 0 2 16 1 0 25 1 0 44 5 6 7 1 0 32 3 1 72 2 0 14 6 3 11 2 0 55 4 0 32 18 1 15 0 9 90 chain 27654 chr3 198295559 + 190693481 190693840 MER4D1 891 + 0 356 45392 117 15 12 227 chain 25239 chr3 198295559 + 190732375 190732721 THE1B 368 + 1 365 48887 171 23 41 152 chain 25289 chr3 198295559 + 190800197 190800525 THE1A 353 + 0 341 48800 109 2 1 69 0 15 8 1 0 139 chain 59821 chr3 198295559 + 190800537 190801406 THE1A-int 1579 + 0 1571 26426 92 115 820 491 4 0 147 6 7 14 chain 27211 chr3 198295559 + 190801414 190802089 THE1A 353 + 0 353 45949 110 1 0 92 1 0 23 320 0 128 chain 4092 chr3 198295559 + 190835359 190835425 THE1D-int 1627 + 1553 1622 90840 10 3 4 10 1 0 13 0 3 29 chain 190260 chr3 198295559 + 190897944 190900666 L1PB1 5432 + 2731 5409 10101 99 10 5 267 0 1 132 4 0 197 0 3 127 21 18 32 6 8 104 20 8 230 2 1 604 0 5 57 5 0 167 38 39 268 1 2 9 3 0 24 1 0 6 1 0 12 9 5 6 2 0 53 2 1 10 14 13 33 37 31 16 11 8 14 2 0 24 8 7 14 1 0 14 1 0 4 chain 37954 chr3 198295559 + 190920163 190920602 LTR7 482 + 0 474 36106 144 0 3 78 0 1 39 0 31 178 chain 295175 chr3 198295559 + 190920612 190924149 HERVH-int 3825 + 0 3825 6978 279 0 1 188 0 1 60 8 2 39 1 0 9 2 1 24 6 56 37 1 0 59 1 2 5 0 2 14 3 6 239 15 14 403 0 1 243 4 31 305 1 0 432 0 1 666 12 222 258 0 2 223 chain 34268 chr3 198295559 + 190925410 190925860 LTR7 482 + 0 482 38514 86 50 0 13 0 50 76 0 1 4 0 31 221 chain 84947 chr3 198295559 + 190955370 190956315 L1PA4 6152 + 5194 6140 20632 703 0 1 242 chain 41837 chr3 198295559 + 190965526 190965989 L1PA3long 6157 + 5692 6156 33465 315 0 1 148 chain 24220 chr3 198295559 + 190978865 190979122 AluYa5 310 + 44 302 50459 89 0 1 168 chain 82386 chr3 198295559 + 190986059 190987118 MER11C 1089 + 0 1073 21156 220 0 5 21 0 9 62 0 4 369 7 9 38 0 1 38 8 0 89 0 1 54 1 0 144 0 1 8 chain 36415 chr3 198295559 + 190998815 190999230 L1P1 4361 + 3334 3749 37130 415 chain 25381 chr3 198295559 + 191110132 191110415 L1PA2 6032 + 5746 6028 48650 135 1 0 147 chain 6558 chr3 198295559 + 191149827 191149908 L1PA13 3608 + 335 416 79128 81 chain 6727 chr3 198295559 + 191166709 191166809 MADE1 96 + 1 94 78552 47 6 0 13 1 0 33 chain 47053 chr3 198295559 + 191185377 191185990 LTR12_ 688 + 0 688 30633 12 6 3 142 24 0 200 1 0 55 0 103 173 chain 57578 chr3 198295559 + 191192251 191192961 LTR12_ 688 + 0 688 27085 151 24 0 325 0 2 210 chain 13917 chr3 198295559 + 191258426 191258657 L1PA8 5853 + 5626 5853 63713 53 1 0 13 7 6 22 26 25 15 1 0 93 chain 9551 chr3 198295559 + 191285927 191286094 L1M1 2793 + 2513 2680 71367 27 27 29 59 1 0 46 1 0 6 chain 16917 chr3 198295559 + 191409028 191409232 L1PA5 6144 + 5938 6143 59890 58 0 1 146 chain 53717 chr3 198295559 + 191467045 191467629 L1PA3long 6157 + 3654 4238 28313 584 chain 126750 chr3 198295559 + 191482420 191483996 THE1A-int 1579 + 0 1579 14441 113 4 7 320 0 2 764 2 0 373 chain 28153 chr3 198295559 + 191503771 191504078 AluYb8 318 + 0 302 44627 118 4 0 8 1 0 176 chain 3416 chr3 198295559 + 191528647 191528691 MLT2B1 522 + 478 522 95942 44 chain 24908 chr3 198295559 + 191552065 191552342 L1PA3long 6157 + 4188 4468 49419 5 0 3 272 chain 57728 chr3 198295559 + 191600618 191601270 L1PA3long 6157 + 5506 6157 27039 111 5 4 536 chain 118570 chr3 198295559 + 191614566 191616027 L1PA7 6471 + 5005 6461 15799 83 14 0 291 0 1 71 0 4 166 1 0 239 1 3 149 1 0 152 0 4 116 0 1 22 1 4 5 2 0 5 2 0 140 chain 2407 chr3 198295559 + 191623203 191623230 L1PA7 6471 + 5683 5710 104126 27 chain 64213 chr3 198295559 + 191623233 191623989 L1PA7 6471 + 5711 6468 25365 746 0 1 10 chain 6846 chr3 198295559 + 191641147 191641227 HY3 101 + 12 92 78154 80 chain 31891 chr3 198295559 + 191648131 191648600 MER4A1 472 + 4 472 40421 80 2 0 141 49 50 197 chain 52011 chr3 198295559 + 191649419 191650127 LTR30 714 + 2 714 28874 211 9 0 11 2 0 6 4 15 9 1 0 20 1 2 172 9 10 169 2 6 39 2 1 41 chain 41224 chr3 198295559 + 191658783 191659306 LTR17 781 + 259 772 33829 40 10 0 28 0 1 64 10 9 371 chain 11109 chr3 198295559 + 191660837 191661024 HERV17-int 4347 + 12 191 68309 14 2 1 45 14 10 30 2 0 19 9 8 52 chain 329721 chr3 198295559 + 191661024 191664950 HERV17-int 4347 + 13 4345 6221 14 1 0 52 1 0 33 2 0 26 2 1 178 1 3 54 0 2 64 0 1 52 20 1 37 0 1 87 8 16 29 0 404 356 0 1 387 1 10 364 0 5 956 2 0 521 0 1 284 0 1 274 0 1 75 4 0 41 chain 26444 chr3 198295559 + 191665266 191665592 LTR17 781 + 0 326 47062 119 0 9 44 1 2 125 10 0 27 chain 309116 chr3 198295559 + 191732579 191736224 L1PA6 6164 + 2508 6162 6634 90 0 3 154 0 1 186 1 2 245 0 1 977 10 9 473 1 0 378 0 1 290 0 4 840 chain 28874 chr3 198295559 + 191787456 191787764 AluYa5 310 + 0 306 43522 97 2 0 209 chain 60695 chr3 198295559 + 191805936 191806673 MER4E 760 + 0 752 26177 23 0 1 251 1 15 462 chain 519911 chr3 198295559 + 191834176 191840650 L1PA7 6471 + 0 6470 2279 240 0 10 66 0 10 76 3 4 83 28 25 63 13 10 91 0 1 61 1 13 497 6 0 8 1 7 1375 0 1 570 0 1 193 0 1 116 7 1 142 0 2 12 4 0 145 45 0 850 0 4 521 0 4 92 1 3 91 0 2 83 0 5 69 1 2 65 1 0 521 0 1 333 chain 89318 chr3 198295559 + 191992359 191993665 L1PBa1 4058 + 2574 3873 19795 275 0 1 193 26 6 30 4 7 112 0 1 172 68 86 87 10 7 114 9 7 29 1 0 43 2 0 106 3 1 22 chain 4252 chr3 198295559 + 192070170 192070220 L1MC4a 1092 + 817 867 89811 50 chain 3483 chr3 198295559 + 192191256 192191379 L1MC1 2226 + 2083 2191 95361 14 11 9 14 1 0 8 38 27 28 1 0 8 chain 22055 chr3 198295559 + 192363001 192363249 L1PA5 6144 + 5896 6144 53759 248 chain 127850 chr3 198295559 + 192457234 192458806 THE1A-int 1579 + 0 1579 14303 44 0 1 308 0 1 28 1 0 58 0 2 11 2 3 13 0 1 32 0 1 197 0 1 878 chain 25328 chr3 198295559 + 192458806 192459158 THE1A 353 + 0 353 48745 49 0 1 44 1 0 13 26 27 219 chain 8785 chr3 198295559 + 192503846 192504048 L1PA15 4387 + 4166 4355 73031 19 1 0 23 4 0 9 1 0 6 10 11 33 6 3 26 1 3 15 3 1 12 16 11 17 chain 12080 chr3 198295559 + 192573270 192573643 MLT2B4 540 + 0 486 66702 31 57 58 63 1 0 48 133 246 40 chain 36344 chr3 198295559 + 192576758 192577214 L1PA7 6471 + 6012 6469 37175 153 2 1 59 6 7 52 0 1 184 chain 34331 chr3 198295559 + 192598844 192599254 L1PA7 6471 + 6042 6454 38472 198 0 1 66 1 2 145 chain 20168 chr3 198295559 + 192608020 192608452 L1MA3 4352 + 3956 4352 56173 85 1 0 35 0 1 12 92 67 80 4 0 22 2 0 24 2 1 5 1 0 25 25 22 17 chain 26809 chr3 198295559 + 192629998 192630347 MSTA 426 + 65 414 46522 34 0 1 104 7 6 204 chain 14404 chr3 198295559 + 192634235 192634546 MER2 342 + 0 341 63027 12 5 6 30 71 88 81 1 0 78 12 25 21 chain 4366 chr3 198295559 + 192639616 192639714 MER2 342 + 29 133 89075 27 22 27 32 4 5 13 chain 46365 chr3 198295559 + 192659999 192660509 L1PA4 6152 + 5630 6140 30899 510 chain 26099 chr3 198295559 + 192665401 192665783 L1PA8 5853 + 5485 5853 47576 73 5 4 46 2 0 6 0 4 60 2 1 61 2 1 19 1 0 40 17 5 48 chain 66124 chr3 198295559 + 192711222 192711962 SVA_C 1631 + 886 1630 24929 99 0 4 15 1 2 312 1 0 312 chain 41809 chr3 198295559 + 192730257 192730995 L1MA5A 2387 + 1611 2302 33479 25 2 0 6 0 1 87 0 1 6 2 0 6 27 25 64 25 11 7 0 6 109 0 1 60 9 8 35 1 0 39 1 0 27 2 0 20 2 0 16 15 11 33 39 15 66 1 0 6 chain 19049 chr3 198295559 + 192752676 192752922 L1PA8 5853 + 5610 5853 57497 69 10 9 52 2 1 19 1 0 93 chain 459274 chr3 198295559 + 192758469 192764552 L1PA8 5853 + 108 5853 4149 197 15 3 276 0 3 6 1 0 40 0 6 11 20 7 6 0 1 119 0 3 88 6 5 132 0 1 133 3 0 88 1 2 46 1 0 370 2 1 123 1 0 243 0 1 73 0 1 378 1 4 6 0 4 483 0 1 27 0 1 11 2 0 600 10 1 50 321 0 213 0 1 34 0 2 101 1 0 127 3 5 82 7 9 41 0 5 61 2 0 530 6 6 11 1 4 46 12 6 64 0 2 157 0 1 354 1 0 43 1 0 46 2 0 69 1 0 11 1 0 48 8 7 15 1 0 93 chain 41704 chr3 198295559 + 192766628 192767090 L1PA4 6152 + 5684 6152 33548 450 0 6 12 chain 21464 chr3 198295559 + 192774161 192774491 THE1A 353 + 0 330 54560 71 17 17 21 27 26 28 0 1 166 chain 121328 chr3 198295559 + 192774515 192776025 THE1A-int 1579 + 0 1572 15290 15 1 3 394 0 2 32 1 38 51 0 1 586 24 44 406 chain 26710 chr3 198295559 + 192776032 192776386 THE1A 353 + 0 353 46671 110 11 10 233 chain 110315 chr3 198295559 + 192788849 192790172 LTR12C 1709 + 0 1709 17035 464 4 3 6 0 1 176 0 278 181 11 8 7 0 2 20 0 3 75 0 4 170 0 102 209 chain 16419 chr3 198295559 + 192796089 192796315 L1PA7 6471 + 6210 6454 60488 132 0 19 22 18 17 54 chain 3313 chr3 198295559 + 192855063 192855101 Tigger1 2417 + 2184 2222 96898 38 chain 26517 chr3 198295559 + 192931012 192931330 AluYb8 318 + 0 313 46951 63 2 0 244 3 0 6 chain 2493 chr3 198295559 + 192995742 192995859 LTR7 482 + 86 285 103680 15 15 14 17 49 132 21 chain 293922 chr3 198295559 + 192996058 192999724 HERVH-int 3825 + 0 3825 7014 530 6 1 39 1 0 9 2 1 24 28 0 27 29 25 37 5 4 82 1 0 59 2 5 386 16 1 199 9 0 29 0 2 10 1 0 26 0 4 279 0 1 517 0 1 771 10 12 39 8 218 257 6 8 222 chain 25104 chr3 198295559 + 193000983 193001388 LTR7 482 + 0 482 49109 69 8 46 109 8 40 21 1 0 4 5 6 41 0 4 14 2 1 27 0 2 31 16 18 49 chain 42545 chr3 198295559 + 193018582 193019132 MLT2A2 560 + 0 560 33038 180 1 0 217 5 16 147 chain 19618 chr3 198295559 + 193036425 193036638 AluSp 311 + 69 282 56888 213 chain 41686 chr3 198295559 + 193047324 193047861 MLT2A2 560 + 0 560 33562 84 0 11 98 0 1 66 5 6 45 1 0 88 3 14 147 chain 62451 chr3 198295559 + 193071119 193071806 L1PA5 6144 + 5442 6131 25762 368 0 1 160 0 1 159 chain 54976 chr3 198295559 + 193162482 193163240 MER4E 760 + 0 760 27879 17 5 0 134 12 15 56 3 0 47 0 1 48 1 9 34 8 0 59 5 6 20 0 3 274 0 2 6 2 0 5 0 2 22 chain 477873 chr3 198295559 + 193179391 193185025 L1PA6 6164 + 0 5634 3676 567 1 0 423 8 0 441 0 1 895 3 0 102 1 0 596 2 0 164 0 1 26 2 1 43 0 3 297 0 1 669 6 8 72 0 1 242 0 6 154 8 1 552 0 4 43 1 5 316 chain 19129 chr3 198295559 + 193219742 193220134 L1PB1 5432 + 5053 5409 57422 50 6 0 11 1 0 24 1 0 8 1 0 8 7 3 10 2 0 53 3 2 10 5 4 45 1 0 14 32 22 10 8 5 14 2 0 24 1 0 21 1 0 13 1 0 5 chain 26199 chr3 198295559 + 193247187 193247623 MER61D 487 + 0 487 47423 145 0 60 28 7 8 28 36 29 15 6 7 9 5 3 73 2 1 65 2 1 15 chain 44003 chr3 198295559 + 193257616 193258165 MLT2A2 560 + 1 560 32127 179 1 0 222 0 11 147 chain 15605 chr3 198295559 + 193316816 193317018 L1MB1 2102 + 1046 1248 61525 202 chain 88892 chr3 198295559 + 193413043 193414149 MER11A 1151 + 0 1151 19871 294 0 11 83 0 1 163 3 1 122 1 0 125 7 6 56 3 0 6 0 35 126 1 2 76 0 4 40 chain 138227 chr3 198295559 + 193427119 193428686 L1PA5 6144 + 4295 5879 13243 52 0 4 149 0 1 265 0 12 1101 chain 221364 chr3 198295559 + 193478151 193481232 L1PB1 5432 + 2344 5392 8995 156 5 1 252 18 26 63 2 0 364 0 1 518 6 7 73 13 15 385 0 3 61 0 1 34 0 1 116 0 1 23 1 0 4 34 20 159 3 0 215 1 2 258 2 3 6 3 0 26 0 2 4 1 0 12 2 0 3 2 0 9 2 0 52 2 1 15 1 0 41 48 35 14 3 1 5 1 0 14 2 0 24 1 0 22 chain 28824 chr3 198295559 + 193506586 193506961 THE1C 375 + 0 375 43591 180 6 7 163 1 0 25 chain 29189 chr3 198295559 + 193526200 193526619 L1PA8 5853 + 5446 5853 43067 118 1 0 46 2 0 65 22 15 45 7 6 19 2 1 92 chain 4885 chr3 198295559 + 193575128 193575204 MLT1H1 527 + 448 525 86234 45 0 5 6 6 2 19 chain 7736 chr3 198295559 + 193585502 193585597 MER30 238 + 137 238 75520 22 1 7 72 chain 7728 chr3 198295559 + 193624205 193624299 HY1 111 + 17 111 75537 94 chain 14465 chr3 198295559 + 193679029 193679224 L1PA8A 6298 + 6079 6284 62947 134 5 11 37 1 5 18 chain 18908 chr3 198295559 + 193715441 193715684 MSTA-int 1630 + 1386 1625 57629 71 4 1 60 1 0 107 chain 4625 chr3 198295559 + 193820266 193820362 L1ME1 1623 + 133 228 87670 18 27 26 51 chain 13195 chr3 198295559 + 193829121 193829332 MER30 238 + 0 238 64789 17 1 19 56 17 27 80 3 0 12 0 2 25 chain 24241 chr3 198295559 + 193845203 193845522 THE1C 375 + 0 323 50433 185 8 9 26 0 3 100 chain 8052 chr3 198295559 + 193864984 193865182 L1PB1 5432 + 5251 5430 74744 22 8 11 11 24 13 17 2 0 7 1 0 14 2 0 23 3 2 22 1 0 11 2 0 18 1 0 4 1 0 4 chain 16868 chr3 198295559 + 193888552 193888774 L1PA8 5853 + 5629 5849 59948 49 2 1 81 1 0 89 chain 452124 chr3 198295559 + 193922965 193928350 HERVL-int 5654 + 265 5654 4334 637 8 0 652 2 3 1202 6 7 282 5 6 206 8 13 673 0 1 17 0 1 128 0 1 122 9 17 469 5 1 657 4 0 70 0 1 223 chain 3558 chr3 198295559 + 193982977 193983017 MIR 256 + 79 119 94762 40 chain 136696 chr3 198295559 + 194066082 194067928 L1MA2 4263 + 1437 3443 13366 11 0 167 153 3 4 121 0 1 52 1 0 16 2 1 180 2 0 102 3 0 274 0 1 121 12 11 116 1 0 137 8 9 149 2 0 307 1 0 15 0 1 57 chain 3405 chr3 198295559 + 194176830 194176895 UCON29 292 + 224 288 96027 14 9 8 42 chain 5099 chr3 198295559 + 194244123 194244368 L1MC1 2226 + 1972 2184 85165 8 3 0 15 2 0 4 0 1 36 154 125 23 chain 69798 chr3 198295559 + 194400442 194401189 SVA_E 1901 + 978 1901 24043 124 0 176 623 chain 29479 chr3 198295559 + 194472593 194472990 L1PA16 3655 + 3188 3578 42628 12 2 1 89 2 0 178 0 1 6 4 0 89 1 0 14 chain 12751 chr3 198295559 + 194496635 194496807 MER58A 224 + 41 221 65523 15 1 7 44 0 2 112 chain 126790 chr3 198295559 + 194519295 194520864 THE1B-int 1605 + 0 1597 14438 74 1 0 356 1 26 29 1 2 195 1 0 254 0 3 178 2 1 4 0 2 473 chain 58764 chr3 198295559 + 194655690 194656340 L1PA4 6152 + 4679 5333 26749 625 0 4 25 chain 22912 chr3 198295559 + 194740091 194740375 AluSc5 308 + 9 287 52494 117 6 0 161 chain 48323 chr3 198295559 + 194840443 194841113 LTR12D 1347 + 403 1347 30174 133 25 31 56 0 1 28 2 18 18 0 18 220 0 200 84 0 33 104 chain 55081 chr3 198295559 + 194913866 194914512 L1PA7 6471 + 5820 6470 27843 57 0 1 423 1 2 153 1 3 11 chain 43254 chr3 198295559 + 194921901 194922771 MER41A 554 + 0 554 32610 185 318 8 61 15 9 291 chain 549176 chr3 198295559 + 195087672 195093677 L1PA2 6032 + 3 6016 801 71 0 1 156 5 1 132 0 1 380 0 1 7 11 19 2126 0 1 3117 chain 10047 chr3 198295559 + 195214786 195214893 U6 107 + 0 107 70312 107 chain 407654 chr3 198295559 + 195214893 195219309 L1PA2 6032 + 1586 6013 5050 1238 0 11 3178 chain 36531 chr3 198295559 + 195242954 195243370 L1PA5 6144 + 5728 6144 37060 416 chain 21588 chr3 198295559 + 195332572 195332934 THE1D 372 + 0 357 54378 13 0 2 17 1 0 23 9 0 10 24 27 28 1 0 64 16 18 15 8 7 133 chain 4379 chr3 198295559 + 195350159 195350346 L1ME1 1623 + 288 478 89004 21 69 75 32 20 19 23 10 8 12 chain 25001 chr3 198295559 + 195386455 195386798 L1PA8 5853 + 5507 5853 49278 55 1 0 47 3 1 71 1 0 7 1 3 37 10 16 16 1 0 93 chain 5050 chr3 198295559 + 195459423 195459479 U6 107 + 0 56 85407 56 chain 22592 chr3 198295559 + 195469315 195469657 THE1B 368 + 0 368 53000 44 0 15 42 0 2 69 1 0 26 45 55 115 chain 3386 chr3 198295559 + 195562077 195562119 MLT1D 503 + 124 164 96220 32 2 0 8 chain 174950 chr3 198295559 + 195607414 195611579 MER4-int 2692 + 1 2692 10841 12 1 0 23 2 0 63 1 0 19 4 0 64 7 8 122 21 6 66 0 2 122 0 3 185 0 2 70 0 1 129 1817 324 160 0 16 55 1 0 144 3 8 151 8 25 84 1 0 148 1 0 257 2 1 11 0 2 45 0 1 143 6 10 4 1 0 76 18 11 118 chain 31045 chr3 198295559 + 195608335 195608770 MER4A1 472 + 0 458 41091 30 1 0 67 16 18 108 30 52 183 chain 33528 chr3 198295559 + 195611586 195612034 MER4A1 472 + 0 472 39062 12 3 5 13 1 0 200 0 22 106 1 2 112 chain 3482 chr3 198295559 + 195620484 195620529 MIR3 191 + 75 120 95371 45 chain 86188 chr3 198295559 + 195653520 195654508 LTR13 1007 + 18 1007 20392 345 0 14 52 15 1 429 0 1 147 chain 34194 chr3 198295559 + 195679536 195679998 MER9a3 513 + 7 513 38572 11 0 2 54 0 1 104 4 5 90 3 21 13 8 29 97 0 1 78 chain 18189 chr3 198295559 + 195696383 195696623 L1PA7 6471 + 5253 5494 58474 30 7 8 203 chain 3482 chr3 198295559 + 195726827 195726872 MIR3 191 + 75 120 95370 45 chain 114785 chr3 198295559 + 195791611 195793131 L1PA8 5853 + 4306 5853 16416 6 0 6 94 6 13 443 0 1 50 0 2 66 0 4 18 2 0 513 1 0 42 1 0 44 2 0 73 1 0 7 10 12 16 32 44 93 chain 10848 chr3 198295559 + 195922389 195922510 L1PA4 6152 + 6030 6151 68780 121 chain 9090 chr3 198295559 + 195933355 195933514 LTR2C 499 + 338 499 72365 38 3 0 6 25 28 28 1 3 58 chain 106733 chr3 198295559 + 196017395 196018668 L1PA7 6471 + 5178 6455 17465 436 0 3 473 0 1 206 16 14 128 0 2 14 chain 72407 chr3 198295559 + 196021930 196022888 LTR13 1007 + 0 956 23448 72 5 0 9 0 3 297 4 5 263 0 1 9 22 6 20 0 3 11 0 9 54 0 1 10 11 12 171 chain 4149 chr3 198295559 + 196029392 196029440 L1MA3 4352 + 1134 1182 90465 48 chain 35714 chr3 198295559 + 196057094 196057539 LTR2 463 + 2 463 37593 80 4 17 13 3 0 15 0 3 81 0 1 101 0 2 148 chain 23737 chr3 198295559 + 196064975 196065280 AluSp 311 + 0 300 51218 77 14 9 214 chain 3102 chr3 198295559 + 196072818 196072851 U7 62 + 0 33 98771 33 chain 21030 chr3 198295559 + 196079326 196079619 AluSp 311 + 0 287 55080 36 3 0 59 1 0 24 3 1 85 3 1 70 0 2 9 chain 13951 chr3 198295559 + 196123997 196124191 LTR8 732 + 537 732 63667 39 10 11 145 chain 116812 chr3 198295559 + 196243541 196245092 SVA_C 1631 + 41 1616 16084 528 0 40 116 14 11 36 43 4 22 1 4 29 152 175 610 chain 3202 chr3 198295559 + 196244235 196244278 SVA_C 1631 + 463 506 44533 43 chain 11318 chr3 198295559 + 196244330 196244482 SVA_C 1631 + 558 747 44533 138 0 37 14 chain 5612 chr3 198295559 + 196265650 196265715 BC200 147 + 5 70 82747 65 chain 3844 chr3 198295559 + 196275260 196275337 L1MA7 2200 + 1871 1947 92536 26 3 4 14 10 8 24 chain 10319 chr3 198295559 + 196363498 196363647 Tigger1 2417 + 492 646 69767 71 8 12 7 0 1 63 chain 527247 chr3 198295559 + 196380508 196388451 L1PA6 6164 + 0 6158 1945 195 0 1 4 5 0 39 0 2 274 5 7 45 1 0 231 1 18 1011 0 2 506 320 0 139 0 15 30 3 0 180 1 0 490 0 1 1001 1415 0 175 0 4 188 0 1 232 76 0 585 5 1 631 9 1 50 0 3 96 chain 119151 chr3 198295559 + 196385006 196386393 SVA_B 1603 + 0 1603 15670 19 0 25 406 0 76 307 4 87 55 3 35 593 chain 24413 chr3 198295559 + 196417034 196417316 AluY 311 + 3 287 50145 129 0 1 78 0 1 75 chain 5608 chr3 198295559 + 196421393 196421472 MER5C 305 + 91 168 82770 68 1 0 5 1 0 4 chain 3007 chr3 198295559 + 196427302 196427335 U6 107 + 0 33 99767 33 chain 79243 chr3 198295559 + 196520764 196521732 LTR13A 966 + 0 966 21794 126 1 2 156 1 0 3 1 0 98 1 0 581 chain 22105 chr3 198295559 + 196547456 196548296 THE1B 368 + 0 368 53687 12 1 3 29 3 21 101 498 6 98 0 1 16 36 35 46 chain 117266 chr3 198295559 + 196548296 196550160 THE1B-int 1605 + 0 1594 16007 23 6 11 391 341 56 87 8 7 166 13 15 411 5 9 18 1 0 259 2 3 63 0 5 70 chain 10688 chr3 198295559 + 196578696 196578910 MER30 238 + 0 238 69066 18 42 49 40 4 0 11 10 28 44 0 3 45 chain 12923 chr3 198295559 + 196751214 196752180 Tigger4b 360 + 1 360 65214 97 24 47 30 693 61 55 27 36 12 8 1 20 chain 23365 chr3 198295559 + 196827485 196827760 L1PA5 6144 + 5866 6143 51828 264 1 3 10 chain 15408 chr3 198295559 + 196847346 196847643 HUERS-P3b-int 2065 + 1638 1926 61780 65 0 2 20 12 10 67 2 0 13 35 32 33 24 20 26 chain 19098 chr3 198295559 + 196864461 196864701 L1PA16 3655 + 2944 3186 57446 150 0 2 90 chain 55554 chr3 198295559 + 196908855 196909598 L1P3 4156 + 3395 4139 27703 87 2 1 37 1 0 22 17 24 80 11 9 260 1 0 83 0 3 39 6 5 62 2 0 7 2 1 24 chain 46318 chr3 198295559 + 196911835 196912493 L1PA8 5853 + 5101 5760 30913 56 18 17 199 0 1 35 5 11 95 2 3 46 1 0 44 2 0 74 1 0 6 1 0 52 2 1 19 chain 74950 chr3 198295559 + 196944079 196945028 LTR5_Hs 974 + 0 974 22854 8 0 4 276 0 1 115 9 7 111 0 10 290 13 21 23 6 4 21 0 6 77 chain 98363 chr3 198295559 + 196973251 196974343 SVA_D 2077 + 61 2077 18502 43 0 27 463 0 40 53 0 858 514 1 0 18 chain 8585 chr3 198295559 + 196981382 196981678 L1MC1 2226 + 1767 2050 73477 60 161 151 17 2 0 51 1 0 4 chain 118008 chr3 198295559 + 197146035 197147786 L1PB1 5432 + 3692 5404 15884 27 5 8 102 0 4 281 17 20 137 0 1 32 0 1 4 1 0 68 3 4 123 3 7 94 4 0 23 0 1 100 6 10 66 0 1 38 0 1 249 0 14 6 48 0 24 1 0 6 1 0 12 20 14 49 3 2 15 1 0 46 5 4 16 16 6 18 3 1 5 1 0 14 2 0 24 1 0 13 0 4 4 1 0 13 chain 24369 chr3 198295559 + 197211200 197211526 L1PREC2 3366 + 1629 1956 50217 56 14 13 92 0 1 102 0 1 62 chain 21073 chr3 198295559 + 197301001 197301306 AluSg7 307 + 0 307 55035 29 2 1 95 47 50 132 chain 3953 chr3 198295559 + 197353451 197353501 MIRb 242 + 81 135 91740 10 0 4 40 chain 24621 chr3 198295559 + 197359318 197359647 THE1B 368 + 0 368 49836 107 0 43 13 3 1 4 1 0 126 2 1 73 chain 9732 chr3 198295559 + 197400450 197400574 MER4A1_ 611 + 486 611 70978 111 0 2 6 1 0 6 chain 545294 chr3 198295559 + 197409928 197416057 L1PA4 6152 + 15 6151 1020 445 6 0 120 1 0 656 2 0 1084 1 0 14 0 1 77 0 1 347 1 11 442 0 1 1091 1 0 42 0 4 950 0 1 849 chain 2908 chr3 198295559 + 197494836 197494883 MLT1N2 510 + 427 474 100781 16 1 2 9 1 0 20 chain 25178 chr3 198295559 + 197556896 197557334 MER4A1 472 + 1 472 48993 85 0 1 23 0 1 30 0 1 71 11 32 93 73 76 24 7 13 21 chain 48565 chr3 198295559 + 197560123 197560699 LTR10C 591 + 0 591 30098 45 0 1 72 0 1 26 0 8 383 0 5 50 chain 189680 chr3 198295559 + 197564347 197567251 MER4-int 2692 + 74 2692 10134 25 2 0 26 3 0 224 12 32 111 1 3 148 323 0 42 10 10 8 0 2 73 0 13 116 0 1 199 5 6 10 5 8 62 0 3 115 2 1 17 2 0 27 0 4 113 1 3 31 6 1 89 0 5 178 1 0 110 0 2 59 2 0 68 1 0 118 0 1 117 12 0 19 2 0 6 0 4 76 0 5 24 1 0 291 0 1 11 chain 32063 chr3 198295559 + 197567260 197567719 MER4A1 472 + 1 470 40296 44 0 1 179 41 51 32 0 1 133 2 0 28 chain 118576 chr3 198295559 + 197569839 197571397 THE1B-int 1605 + 0 1605 15796 25 3 0 5 12 15 77 2 1 115 0 3 191 0 25 42 0 3 78 18 24 39 1 0 634 0 12 316 chain 53359 chr3 198295559 + 197571926 197572594 PABL_B 668 + 0 668 28453 112 0 1 165 1 0 6 0 1 163 4 0 108 0 3 109 chain 23816 chr3 198295559 + 197609351 197609666 L1MA3 4352 + 2177 2489 51072 63 1 0 73 1 0 62 1 0 114 chain 6516 chr3 198295559 + 197688482 197688560 LTR41 747 + 669 746 79284 72 1 0 5 chain 29590 chr3 198295559 + 197901810 197902683 L1M1 2793 + 494 1269 42493 5 1 0 10 1 0 13 3 0 11 1 0 7 1 0 14 2 0 9 3 0 7 1 0 9 150 86 30 227 201 6 1 0 93 9 8 90 0 2 24 0 4 57 4 5 84 chain 49219 chr3 198295559 + 197902692 197903364 L1MA3 4352 + 2586 3258 29857 58 1 0 77 5 6 50 10 14 121 8 0 8 10 18 107 7 2 181 0 1 29 chain 29858 chr3 198295559 + 197927746 197928103 L1PA6 6164 + 5794 6151 42175 259 0 3 6 3 0 89 chain 8377 chr3 198295559 + 197994605 197994708 U6 107 + 3 106 73955 103 chain 9097 chr3 198295559 + 198045601 198045715 LTR8 732 + 41 155 72351 114 chain 74143 chr3 198295559 + 198050677 198051658 LTR13 1007 + 6 991 23049 67 2 0 183 0 1 6 0 2 10 2 1 105 4 5 242 2 1 65 5 9 248 25 25 15 chain 97419 chr3 198295559 + 198082159 198083231 L1PA3long 6157 + 5082 6157 18603 68 0 1 156 0 1 540 0 1 308 chain 48304 chr3 198295559 + 198150271 198150864 LTR10C 591 + 0 591 30179 15 0 5 489 8 0 60 1 2 20 chain 20692 chr3 198295559 + 198187180 198187463 AluSp 311 + 2 286 55507 51 12 14 166 7 6 47 chain 8765 chr3_GL000221v1_random 155397 + 41673 41797 MSTA-int 1630 + 1488 1611 73068 28 6 5 90 chain 528766 chr3_GL000221v1_random 155397 + 65216 71368 L1PA2 6032 + 0 6031 1888 153 16 15 51 5 1 32 5 4 513 137 9 261 0 3 57 0 3 335 0 2 1124 1 2 482 1 2 266 0 3 2713 chain 15144 chr3_GL000221v1_random 155397 + 75520 75871 MER57-int 2662 + 2334 2647 62107 8 1 0 57 5 0 25 18 12 68 36 21 12 0 1 5 19 16 16 29 23 27 3 0 22 chain 21048 chr3_GL000221v1_random 155397 + 120599 120839 L1PA4 6152 + 5900 6140 55063 240 chain 34917 chr3_GL000221v1_random 155397 + 140464 140904 L1PA5 6144 + 5688 6129 38080 122 1 2 178 18 18 121 chain 94120 chr3_GL000221v1_random 155397 + 149221 150317 L1PA4 6152 + 4383 5493 19026 141 0 5 518 0 1 256 0 4 86 0 4 95 chain 84984 chr4 190214555 + 19026 20027 LTR5B 1012 + 5 1012 20622 95 0 2 724 0 4 182 chain 166258 chr4 190214555 + 29957 31896 L1PA5 6144 + 4198 6144 11323 4 0 1 1072 0 4 11 1 0 67 2 1 28 0 3 416 0 1 175 1 6 8 5 0 149 chain 37000 chr4 190214555 + 51725 52257 LTR77 607 + 0 529 36733 42 8 10 121 8 9 78 16 13 232 14 11 13 chain 120288 chr4 190214555 + 202357 204257 THE1B-int 1605 + 1 1597 15484 293 9 9 79 0 1 44 20 42 100 0 2 732 3 7 177 333 0 110 chain 25072 chr4 190214555 + 209918 210213 AluYk4 311 + 0 291 49166 126 4 0 165 chain 75856 chr4 190214555 + 241199 242201 LTR5B 1012 + 3 1012 22625 125 1 14 198 1 0 19 0 1 5 11 9 115 1 0 94 0 1 252 5 1 175 chain 6844 chr4 190214555 + 242208 242389 HERVK-int 6823 + 6 177 78160 11 3 1 24 53 49 9 1 0 18 4 3 13 2 0 43 chain 79591 chr4 190214555 + 259129 260116 LTR13 1007 + 0 1007 21721 136 11 18 226 1 6 242 2 1 54 1 7 10 0 1 209 0 2 44 5 7 6 2 0 38 chain 25568 chr4 190214555 + 270179 270454 AluYa5 310 + 36 310 48371 96 1 0 178 chain 43781 chr4 190214555 + 278462 279084 LTR66 600 + 0 600 32269 45 0 3 43 0 14 261 71 0 49 2 0 23 0 17 14 0 16 13 0 1 101 chain 48743 chr4 190214555 + 302835 303391 LTR6B 557 + 0 557 30036 48 1 0 56 0 2 164 1 0 89 0 1 41 1 0 49 0 1 106 chain 39070 chr4 190214555 + 384339 384897 LTR77 607 + 0 549 35307 13 0 4 150 0 1 95 33 20 187 1 3 32 5 2 42 chain 29541 chr4 190214555 + 389837 390281 LTR2B 499 + 14 499 42557 40 0 11 4 1 0 42 54 85 110 0 1 10 1 0 182 chain 154661 chr4 190214555 + 394999 396783 SVA_D 2077 + 42 2077 12073 11 0 2 553 4 0 79 0 40 180 0 182 140 0 1 27 0 1 4 22 50 76 0 1 4 9 8 39 1 0 521 0 2 114 chain 32448 chr4 190214555 + 452107 452990 HERVL66-int 1251 + 244 915 39991 8 21 0 47 19 1 17 14 9 12 96 69 91 1 0 61 12 1 25 14 11 44 10 9 29 1 0 68 19 17 48 45 18 46 110 15 25 chain 41942 chr4 190214555 + 454696 455240 LTR66 600 + 0 575 33398 165 0 1 192 2 0 54 2 0 30 1 18 23 7 24 68 chain 352633 chr4 190214555 + 458879 463915 L1PA7 6471 + 2029 6468 5883 234 0 2 38 15 18 194 0 6 120 1 0 59 311 10 179 0 4 193 10 14 55 6 10 331 1 0 7 17 6 137 0 2 191 0 1 49 4 0 120 0 1 66 4 0 80 25 25 156 0 2 97 306 0 170 0 2 37 0 1 162 0 2 51 7 7 116 1 2 562 2 0 72 2 1 680 16 15 152 chain 78510 chr4 190214555 + 484028 485076 MER11C 1089 + 6 1069 21980 240 0 9 62 0 4 32 1 0 31 2 1 147 52 51 107 1 5 4 1 0 38 0 1 127 0 1 54 1 0 144 0 1 4 chain 3623 chr4 190214555 + 487732 487775 MER51C 639 + 57 100 94252 43 chain 10410 chr4 190214555 + 493147 493336 LTR8 732 + 11 199 69592 4 0 1 16 51 49 118 chain 59020 chr4 190214555 + 592310 592955 SVA_D 2077 + 1432 2077 26658 645 chain 8545 chr4 190214555 + 691624 691727 MER4A 717 + 579 682 73573 103 chain 50474 chr4 190214555 + 694299 694889 LTR10C 591 + 0 591 29387 510 0 1 80 chain 99387 chr4 190214555 + 773376 775164 LTR12C 1709 + 0 1709 18365 188 33 30 38 25 21 61 0 43 33 12 7 245 1 278 127 0 47 90 52 20 180 0 4 81 101 0 10 304 0 124 1 0 82 chain 3676 chr4 190214555 + 774550 774591 LTR12C 1709 + 1399 1440 93773 41 chain 7198 chr4 190214555 + 774656 774767 LTR12C 1709 + 1505 1646 76949 57 11 40 4 0 1 39 chain 3468 chr4 190214555 + 922147 922193 MLT1B 390 + 131 219 95464 36 0 42 10 chain 106053 chr4 190214555 + 975370 976542 SVA_E 1901 + 0 1563 17556 146 2 0 178 3 0 326 0 1 161 0 220 63 1 0 7 0 176 285 chain 19143 chr4 190214555 + 978020 978244 AluSp 311 + 69 293 57404 224 chain 3803 chr4 190214555 + 981269 981313 HERVL74-int 1085 + 6 50 92831 44 chain 15341 chr4 190214555 + 1128024 1128355 L1PB1 5432 + 5114 5419 61862 32 1 0 10 2 0 3 2 0 8 2 0 10 0 2 39 2 1 10 8 7 41 4 3 16 1 0 4 2 0 7 10 1 19 8 5 14 2 0 24 1 0 17 7 8 9 1 0 15 chain 24836 chr4 190214555 + 1256182 1256542 THE1B 368 + 0 368 49534 169 1 0 29 8 6 10 17 29 63 7 6 56 chain 28240 chr4 190214555 + 1279793 1280130 L1PA5 6144 + 5802 6136 44503 36 3 1 156 1 0 141 chain 23455 chr4 190214555 + 1287218 1287533 MER4D1 891 + 108 420 51664 57 2 0 53 0 2 174 8 4 17 0 1 4 chain 38907 chr4 190214555 + 1709255 1710065 LTR14 556 + 0 556 35419 159 0 2 99 0 2 44 1 8 16 0 1 33 300 0 9 0 5 121 6 35 22 chain 17817 chr4 190214555 + 1714593 1714915 MER49 923 + 426 807 58865 27 0 1 52 38 93 7 1 0 31 10 21 103 2 1 24 6 0 21 chain 22876 chr4 190214555 + 1919662 1919952 AluSc5 308 + 11 295 52541 115 4 0 162 2 0 7 chain 6085 chr4 190214555 + 1954792 1954888 MER20 218 + 17 131 80782 40 15 33 41 chain 252590 chr4 190214555 + 2000000 2003828 L1PA8A 6298 + 3054 6281 8163 182 22 10 35 2 0 83 5 0 9 7 5 68 0 3 23 2 0 5 2 0 10 12 6 188 3 7 179 0 4 118 0 1 282 4 1 230 5 30 43 8 12 93 613 0 251 1 0 547 9 12 79 0 2 546 5 1 56 4 5 8 1 2 47 0 3 41 chain 2507 chr4 190214555 + 2103032 2103061 L1M2 1805 + 496 525 103610 29 chain 237466 chr4 190214555 + 2109996 2112596 L1PA4 6152 + 2744 5351 8536 1196 0 1 697 0 5 464 0 1 243 chain 120250 chr4 190214555 + 2161087 2162515 LTR12C 1709 + 0 1709 15494 294 3 4 67 0 2 210 2 1 72 0 278 184 1 0 4 4 2 106 0 4 481 chain 3918 chr4 190214555 + 2189688 2189748 L1MA4 2864 + 1293 1346 91980 24 4 0 24 3 0 5 chain 404889 chr4 190214555 + 2200524 2207323 L1PB1 5432 + 110 5359 5096 37 9 10 411 326 0 26 6 0 266 1 0 242 0 12 59 0 16 221 13 0 196 0 2 69 0 1 42 315 6 93 0 3 436 309 2 45 10 42 29 0 8 111 5 1 11 323 0 147 1 2 162 1 2 6 1 0 499 0 1 192 0 1 209 1 4 232 310 4 15 11 5 280 1 4 330 0 1 23 3 0 477 1 2 9 3 0 25 1 0 7 1 0 12 4 0 11 2 0 50 1 0 10 9 8 44 1 0 15 14 1 30 8 5 14 3 1 12 chain 8962 chr4 190214555 + 2329408 2329522 L1MB3 1562 + 1230 1344 72645 114 chain 5131 chr4 190214555 + 2376174 2376254 MER33 330 + 204 282 85013 7 0 2 33 7 3 33 chain 23615 chr4 190214555 + 2380575 2380925 THE1A 353 + 0 353 51404 44 10 11 39 1 0 14 24 28 66 1 0 151 chain 125491 chr4 190214555 + 2380925 2383165 THE1A-int 1579 + 0 1573 14630 470 312 0 174 6 8 4 0 1 213 0 1 143 5 6 417 1 0 72 359 0 64 chain 11802 chr4 190214555 + 2473061 2473530 Tigger1 2417 + 1582 1747 67206 37 314 10 118 chain 110923 chr4 190214555 + 2477871 2479389 THE1B-int 1605 + 60 1605 16950 370 1 26 40 3 0 105 1 0 79 28 28 37 0 9 9 10 1 17 12 7 105 2 3 251 5 6 4 1 0 144 1 0 136 0 1 49 0 7 41 0 2 4 0 1 63 chain 24857 chr4 190214555 + 2479389 2479737 THE1B 368 + 0 368 49510 23 1 0 21 6 24 55 0 3 46 1 0 20 0 2 93 6 5 76 chain 218137 chr4 190214555 + 2737627 2741098 HERVL-int 5654 + 2835 5654 9089 118 4 5 190 0 1 100 48 7 156 1 3 455 0 5 11 22 0 28 0 4 46 0 2 125 0 2 53 15 13 90 0 1 650 1 4 77 0 1 56 315 2 73 2 0 61 0 13 177 6 8 6 0 2 39 0 5 58 318 0 27 3 0 96 1 5 9 3 4 31 chain 3009 chr4 190214555 + 2738041 2738076 HERVL-int 5654 + 3211 3246 99762 35 chain 29310 chr4 190214555 + 2741100 2741531 MLT2A1 477 + 2 477 42872 31 0 5 19 0 1 28 0 1 82 9 8 27 0 1 35 0 1 36 1 0 24 1 0 73 14 56 8 8 0 29 0 4 6 chain 11837 chr4 190214555 + 2763388 2763549 LTR12C 1709 + 1546 1709 67136 12 1 0 61 7 6 13 0 4 67 chain 9416 chr4 190214555 + 2838543 2838743 MER30 238 + 0 232 71661 13 1 17 66 18 31 48 34 37 20 chain 13931 chr4 190214555 + 2861862 2862035 MER30 238 + 31 238 63700 72 4 38 97 chain 31255 chr4 190214555 + 2964713 2965219 LTR61 567 + 0 528 40927 21 6 0 34 17 11 28 3 0 56 19 14 28 0 2 18 0 1 13 4 57 28 2 0 55 12 0 141 1 0 8 1 2 11 chain 31185 chr4 190214555 + 3043321 3043749 MER41B 635 + 190 624 40988 318 0 1 40 26 31 44 chain 76700 chr4 190214555 + 3046928 3048223 LTR13_ 950 + 0 950 22394 68 6 4 11 334 0 78 0 2 105 0 2 120 23 10 550 chain 4090 chr4 190214555 + 3095625 3095678 MLT1D 503 + 447 500 90849 53 chain 12203 chr4 190214555 + 3151595 3151775 MER1B 344 + 158 339 66469 73 4 1 35 14 18 54 chain 436708 chr4 190214555 + 3454348 3460384 HERVL-int 5654 + 0 5263 4632 280 5 6 26 1 0 799 0 1 340 15 2 166 2 1 225 325 4 57 0 2 994 0 3 486 0 1 118 2 0 98 444 0 355 1 3 179 15 13 90 0 1 650 2 5 78 0 1 94 6 5 142 10 7 31 chain 6100 chr4 190214555 + 3557847 3558049 MER83C 372 + 174 365 80729 15 117 106 70 chain 9764 chr4 190214555 + 3647085 3647320 MLT1A0 366 + 88 342 70902 20 105 123 43 0 1 67 chain 26125 chr4 190214555 + 3672826 3673178 THE1C 375 + 0 350 47526 180 0 1 6 1 0 119 15 13 31 chain 3029 chr4 190214555 + 3716301 3716333 MLT1C 463 + 67 99 99507 32 chain 16451 chr4 190214555 + 3846387 3846735 THE1B 368 + 1 368 60447 110 23 24 34 1 0 6 61 81 50 23 22 40 chain 82378 chr4 190214555 + 3925642 3926609 LTR5_Hs 974 + 0 974 21160 50 0 3 405 0 4 512 chain 28214 chr4 190214555 + 3927445 3927843 LTR7 482 + 0 470 44547 69 8 46 109 3 4 30 0 1 4 1 32 70 1 2 103 chain 281684 chr4 190214555 + 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23555 chr4 190214555 + 4546852 4547226 THE1D 372 + 0 372 51495 15 6 8 18 12 0 8 0 1 116 37 45 129 1 0 32 chain 28335 chr4 190214555 + 4550284 4550638 THE1A 353 + 0 353 44363 109 2 1 117 0 1 6 2 1 118 chain 125674 chr4 190214555 + 4550638 4552190 THE1A-int 1579 + 0 1573 14604 353 0 1 135 0 1 639 5 4 8 0 19 123 0 1 289 chain 27973 chr4 190214555 + 4552196 4552544 THE1A 353 + 0 353 44913 37 0 5 311 chain 28647 chr4 190214555 + 4574251 4574621 THE1C 375 + 0 375 43873 63 0 1 88 6 11 187 1 0 25 chain 12963 chr4 190214555 + 4583321 4583500 MLT2A2 560 + 0 166 65161 46 13 0 120 chain 6162 chr4 190214555 + 4584945 4585031 MLT1A0-int 1658 + 14 104 80479 4 1 0 7 1 0 36 0 6 37 chain 107337 chr4 190214555 + 4586872 4588328 L1PA8 5853 + 4351 5853 17403 411 0 11 232 5 4 61 29 30 27 12 12 70 0 27 59 0 1 54 2 0 76 6 8 24 1 0 106 1 0 45 2 0 70 1 0 13 1 0 7 0 15 26 2 1 19 6 5 88 chain 54535 chr4 190214555 + 4604410 4605130 MER4E1 777 + 18 769 28036 7 5 0 116 15 17 7 0 5 159 0 19 64 0 1 14 6 7 104 4 12 219 chain 6164 chr4 190214555 + 4651400 4651476 MER51A 677 + 8 84 80469 76 chain 5783 chr4 190214555 + 4656123 4656195 MLT1A1 405 + 38 110 82005 72 chain 8353 chr4 190214555 + 4669781 4669877 MER41B 635 + 1 97 74021 96 chain 23376 chr4 190214555 + 4703413 4703748 THE1B 368 + 0 344 51804 169 1 0 29 35 45 101 chain 4120 chr4 190214555 + 4805989 4806039 LTR67B 553 + 58 114 90650 42 0 6 8 chain 157423 chr4 190214555 + 4813669 4815654 L1PA8A 6298 + 4283 6290 11920 384 8 6 258 8 23 292 16 13 75 0 5 9 8 3 138 0 3 12 0 1 63 0 2 437 0 1 140 0 4 33 0 1 104 chain 27022 chr4 190214555 + 4923651 4923998 THE1D 372 + 0 360 46239 71 1 11 103 5 8 167 chain 364693 chr4 190214555 + 4925737 4930649 L1PA7 6471 + 1961 6468 5737 126 0 1 372 515 0 180 6 8 836 1 2 120 1 0 722 0 1 771 9 11 7 2 0 390 0 2 188 0 2 60 0 102 331 1 0 28 0 1 189 0 4 46 4 0 7 chain 39108 chr4 190214555 + 4926253 4926750 MER9a3 513 + 15 513 35281 95 0 1 145 1 0 178 1 2 77 chain 19518 chr4 190214555 + 4938236 4938523 L1PB2 3958 + 3557 3838 56995 61 5 4 59 2 1 53 1 0 18 2 0 22 1 0 63 chain 29063 chr4 190214555 + 5006983 5007309 LTR17 781 + 0 326 43240 326 chain 7811 chr4 190214555 + 5015970 5016336 MSTD 398 + 8 381 75340 10 1 0 4 1 2 28 50 47 30 95 110 42 74 69 31 chain 2583 chr4 190214555 + 5025531 5025740 LTR16C 481 + 242 449 103099 19 166 164 24 chain 117505 chr4 190214555 + 5045968 5047449 L1PA8A 6298 + 4784 6291 15974 204 8 11 6 5 0 338 4 32 111 1 0 17 0 1 787 chain 3803 chr4 190214555 + 5068079 5068123 MADE1 96 + 51 95 92822 44 chain 24092 chr4 190214555 + 5093441 5093712 L1PA4 6152 + 5869 6141 50657 7 0 1 264 chain 26419 chr4 190214555 + 5106992 5107443 MER1A 529 + 0 495 47094 18 16 49 13 6 14 35 2 0 67 9 8 140 0 4 81 45 47 19 chain 25036 chr4 190214555 + 5155534 5155891 THE1D 372 + 1 372 49221 132 1 5 24 25 36 142 1 0 32 chain 16906 chr4 190214555 + 5188819 5189022 L1PA6 6164 + 5961 6162 59906 193 2 0 8 chain 130200 chr4 190214555 + 5272592 5274004 L1PA2 6032 + 4619 6032 14015 1253 0 1 159 chain 63881 chr4 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6157 703 1060 0 2 8 0 1 210 0 2 1918 1 6 248 1 0 135 1 0 1717 1 0 842 0 1 7 chain 20876 chr4 190214555 + 5604848 5605177 Tigger2 2703 + 2273 2617 55286 47 9 0 9 0 9 35 3 0 144 14 27 16 6 10 26 1 2 19 chain 30123 chr4 190214555 + 5692586 5692902 AluYb8 318 + 1 317 41921 316 chain 2933 chr4 190214555 + 5702556 5702589 MER3 215 + 45 78 100554 33 chain 11133 chr4 190214555 + 5738892 5739063 Tigger1 2417 + 2187 2363 68358 29 11 10 21 1 4 27 0 3 82 chain 4538 chr4 190214555 + 5788813 5788890 MER30 238 + 0 106 88112 18 12 41 47 chain 19131 chr4 190214555 + 5822697 5823042 MER83 447 + 43 396 57419 7 24 0 49 27 52 29 7 3 132 13 24 57 chain 23171 chr4 190214555 + 5911770 5912074 AluSc 308 + 5 306 52117 248 6 5 20 2 0 28 chain 45045 chr4 190214555 + 5923737 5924285 MLT2A2 560 + 0 560 31555 203 0 1 202 0 11 143 chain 36629 chr4 190214555 + 5946384 5946916 LTR10E 629 + 5 584 36997 5 0 1 85 28 81 118 1 0 29 6 5 50 1 0 154 1 0 15 25 22 14 chain 6194 chr4 190214555 + 6015497 6015582 MER6A 605 + 38 124 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65 0 1 23 0 1 101 19 13 193 0 1 11 chain 8251 chr4 190214555 + 8497669 8497772 LTR61 567 + 442 544 74283 64 1 0 38 chain 22650 chr4 190214555 + 8566830 8567140 AluSc5 308 + 0 308 52902 52 10 5 51 0 1 148 7 9 42 chain 23315 chr4 190214555 + 8670911 8671255 THE1B 368 + 0 368 51907 44 0 15 113 1 0 26 35 45 125 chain 6083 chr4 190214555 + 8755251 8755400 MER66B 489 + 279 431 80792 9 1 0 49 58 62 32 chain 36568 chr4 190214555 + 8757848 8758524 L1PB1 5432 + 4822 5420 37031 281 3 2 9 51 0 29 20 15 9 2 0 53 2 1 60 23 0 15 1 0 6 36 45 23 1 0 21 1 0 13 1 0 16 chain 35644 chr4 190214555 + 8926073 8926544 MER4A1 472 + 0 472 37637 224 12 13 15 0 1 83 1 0 136 chain 200438 chr4 190214555 + 8931028 8934280 MER4-int 2692 + 7 2692 9708 4 1 0 26 2 0 62 1 0 8 0 1 10 5 0 145 312 0 61 0 6 108 0 5 215 0 1 55 5 4 52 8 21 39 1 0 141 0 3 250 314 0 292 0 1 305 25 64 59 0 1 60 8 7 255 1 0 17 3 5 160 1 0 231 0 1 10 chain 34550 chr4 190214555 + 8934619 8935090 MER4A1 472 + 0 472 38318 220 32 33 219 chain 348239 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116 6 7 148 chain 51524 chr4 190214555 + 10339949 10340702 L1PA8 5853 + 5057 5837 29034 35 0 10 59 14 17 195 1 4 144 7 13 30 1 0 6 0 3 36 2 0 9 1 6 54 2 1 12 2 1 48 2 1 19 1 0 49 0 4 24 chain 56840 chr4 190214555 + 10372629 10373305 L1PA5 6144 + 5191 5872 27313 103 1 0 98 4 7 232 1 0 33 0 1 146 0 3 58 chain 22860 chr4 190214555 + 10419456 10419770 MSTA 426 + 110 426 52559 126 2 0 9 9 8 43 0 5 125 chain 28089 chr4 190214555 + 10496661 10497038 MER51B 395 + 1 377 44735 93 4 4 147 7 6 126 chain 42076 chr4 190214555 + 10498902 10499414 LTR10D 510 + 0 510 33308 78 8 5 179 0 1 247 chain 9979 chr4 190214555 + 10511188 10511331 MER4B 649 + 476 619 70464 82 6 5 16 0 1 39 chain 38570 chr4 190214555 + 10574625 10575082 LTR2 463 + 0 463 35663 55 0 3 71 0 3 331 chain 41034 chr4 190214555 + 10579536 10580160 LTR9B 643 + 0 634 33947 134 0 1 66 6 5 125 1 0 91 53 62 18 6 10 6 1 0 79 0 5 6 6 0 26 chain 18534 chr4 190214555 + 10641722 10642085 THE1B 368 + 0 368 58068 108 8 9 52 1 0 6 0 3 6 67 70 52 17 16 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190214555 + 11370094 11370749 L1PA2 6032 + 5229 5884 26152 655 chain 12824 chr4 190214555 + 11370749 11370889 L1PA2 6032 + 5891 6031 65407 140 chain 32713 chr4 190214555 + 11375076 11375523 LTR7B 505 + 0 490 39744 105 0 10 60 15 22 28 3 27 26 0 2 42 0 1 42 1 0 23 0 1 52 2 1 48 chain 17991 chr4 190214555 + 11476841 11477174 L1PA14 3548 + 3131 3452 58667 6 1 0 4 0 1 12 2 1 64 1 0 113 1 0 11 4 0 36 4 2 12 39 36 23 chain 21188 chr4 190214555 + 11503772 11504015 L1PA5 6144 + 5900 6144 54906 89 0 1 154 chain 18325 chr4 190214555 + 11517409 11517762 MSTA 426 + 0 395 58324 106 1 0 4 12 38 55 64 61 32 5 25 74 chain 547713 chr4 190214555 + 11557447 11563583 L1PA3long 6157 + 2 6157 884 2244 0 1 1705 0 5 271 0 8 118 0 4 1040 4 5 754 chain 8348 chr4 190214555 + 11670388 11670492 Tigger3c 601 + 342 446 74033 104 chain 43533 chr4 190214555 + 11677434 11678034 L1PA8 5853 + 4660 5286 32425 35 10 31 227 0 1 55 26 28 47 1 3 199 chain 3758 chr4 190214555 + 11693724 11694046 MLT1G3-int 901 + 619 892 93153 16 130 138 41 120 63 15 chain 6246 chr4 190214555 + 11723685 11723754 LTR12_ 688 + 619 688 80186 69 chain 542513 chr4 190214555 + 11792760 11798752 L1PA2 6032 + 1 6032 1173 254 2 1 108 0 1 2131 0 58 1939 20 0 1376 0 1 162 chain 33982 chr4 190214555 + 11798815 11799198 L1PA3long 6157 + 5774 6157 38719 383 chain 28919 chr4 190214555 + 11806283 11806743 LTR7 482 + 0 482 43452 69 29 17 15 15 14 109 8 40 25 0 1 129 12 14 49 chain 296984 chr4 190214555 + 11806745 11810318 HERVH-int 3825 + 0 3825 6925 425 1 0 106 7 2 37 2 1 9 1 0 24 1 52 41 1 0 82 1 0 1436 3 2 853 9 11 39 8 218 487 chain 13990 chr4 190214555 + 11855109 11855298 MER30 238 + 34 236 63610 69 8 21 112 chain 83768 chr4 190214555 + 11918062 11919041 LTR12C 1709 + 611 1709 20854 39 0 119 68 1 0 275 1 0 4 4 2 106 0 4 481 chain 46516 chr4 190214555 + 11950914 11951467 MER41A 554 + 0 554 30839 314 0 1 239 chain 9105 chr4 190214555 + 11963208 11963321 L1P2 5180 + 1395 1508 72334 113 chain 75962 chr4 190214555 + 11979112 11980159 MER11C 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854 chain 314246 chr4 190214555 + 12364269 12368017 HERVH-int 3825 + 0 3825 6526 49 0 1 332 0 4 89 0 56 39 2 1 8 2 1 24 1 14 15 0 38 26 1 0 12 48 6 35 5 6 11 0 2 9 0 1 777 0 1 96 0 4 1324 3 0 6 0 3 235 0 1 599 chain 24246 chr4 190214555 + 12369278 12369667 LTR7 482 + 0 470 50424 69 8 46 109 8 40 42 12 18 53 3 7 31 17 18 37 chain 13840 chr4 190214555 + 12410598 12410933 THE1B 368 + 1 343 63811 107 127 135 63 17 16 21 chain 10814 chr4 190214555 + 12420800 12421981 MER4A 717 + 0 703 68827 117 1012 534 52 chain 49752 chr4 190214555 + 12432324 12433041 MER4E1 777 + 0 769 29657 25 6 0 93 0 17 36 0 3 158 1 20 39 0 9 26 0 1 6 0 1 107 1 9 32 13 0 9 21 34 144 chain 60376 chr4 190214555 + 12459184 12459954 LTR17 781 + 2 773 26268 119 0 9 196 0 1 41 5 6 248 0 12 83 22 0 56 chain 7997 chr4 190214555 + 12460598 12460700 LTR7 482 + 316 419 74896 49 1 2 52 chain 537828 chr4 190214555 + 12461348 12467472 L1PA4 6152 + 51 6151 1461 198 4 0 785 1 0 210 1 0 1076 1 0 598 0 2 345 0 2 2550 0 1 164 29 4 34 0 1 108 0 2 20 chain 97506 chr4 190214555 + 12477691 12478885 L1PA7 6471 + 5260 6457 18588 87 0 2 272 1 0 217 0 1 430 0 2 50 6 5 131 chain 105527 chr4 190214555 + 12490464 12491641 L1PA4 6152 + 4635 5812 17617 1177 chain 28141 chr4 190214555 + 12491641 12491969 L1PA4 6152 + 5813 6141 44650 328 chain 206159 chr4 190214555 + 12597350 12600195 L1PA10 4194 + 1320 4161 9499 200 26 25 66 5 6 60 13 10 80 2 1 178 0 1 554 16 16 12 4 4 11 0 4 81 0 1 20 1 0 11 1 0 42 30 33 23 0 3 546 8 2 144 0 6 589 0 1 12 22 15 40 11 8 25 1 0 11 chain 31439 chr4 190214555 + 12609451 12609872 LTR12C 1709 + 0 464 40780 265 7 9 16 5 6 42 0 43 48 3 0 35 chain 177376 chr4 190214555 + 12653236 12655204 L1PA3long 6157 + 4186 6156 10706 1179 0 1 691 4 5 94 chain 12154 chr4 190214555 + 12702489 12702793 L1PB1 5432 + 5121 5404 66561 17 1 0 4 35 28 50 21 19 41 1 0 16 1 0 4 19 8 18 16 20 24 1 0 21 1 0 13 chain 30606 chr4 190214555 + 12740469 12740873 L1PA6 6164 + 5752 6160 41463 217 0 12 21 22 14 144 chain 542714 chr4 190214555 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12986349 L1PA8 5853 + 3375 4323 24012 96 52 48 122 0 1 4 1 0 13 6 2 288 1 3 54 0 14 303 chain 3174 chr4 190214555 + 12997846 12997879 MLT1H 522 + 360 393 98152 33 chain 35407 chr4 190214555 + 13022020 13022450 L1PA7 6471 + 6039 6464 37771 96 1 0 177 4 0 152 chain 52126 chr4 190214555 + 13091442 13092258 L1PB1 5432 + 4621 5404 28834 482 6 5 6 1 0 21 1 0 6 0 1 4 1 0 12 4 0 11 6 4 47 18 16 44 1 0 16 3 0 6 16 6 11 12 9 4 1 0 14 2 0 24 1 0 21 1 0 13 chain 6903 chr4 190214555 + 13112210 13112502 MADE1 96 + 2 96 77939 44 200 2 48 chain 172798 chr4 190214555 + 13134008 13136688 L1PA10 4194 + 175 2810 10962 13 2 0 9 3 0 10 2 0 9 11 7 9 2 0 8 99 69 4 1 0 22 2 0 20 77 73 59 2 0 202 15 16 179 6 7 4 1 0 82 2 0 503 29 32 246 2 1 143 0 1 537 95 96 127 1 2 40 0 3 102 chain 17599 chr4 190214555 + 13140672 13140888 THE1D-int 1627 + 1406 1622 59124 171 1 0 18 0 1 26 chain 70830 chr4 190214555 + 13194150 13194928 L1PA4 6152 + 5193 5974 23799 559 0 3 219 chain 26744 chr4 190214555 + 13216671 13217044 L1PA8 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13731078 13731624 MLT2A2 560 + 0 560 33906 212 0 1 113 0 1 4 7 6 65 0 11 52 0 1 17 6 7 70 chain 497847 chr4 190214555 + 13798979 13804560 L1PA3long 6157 + 0 6156 3209 152 0 1 553 7 0 62 8 136 551 0 454 417 1 0 960 0 1 2865 1 0 4 chain 29297 chr4 190214555 + 13812226 13812620 MER41B 635 + 0 382 42900 125 4 5 219 13 0 33 chain 4704 chr4 190214555 + 13819999 13820056 MLT1C 463 + 67 124 87242 57 chain 24294 chr4 190214555 + 13842999 13843379 THE1D-int 1627 + 27 511 50339 10 1 0 59 19 20 163 11 13 43 11 113 63 chain 62159 chr4 190214555 + 13979272 13979973 L1PA5 6144 + 5441 6142 25830 701 chain 22456 chr4 190214555 + 14052654 14052936 L1PA7 6471 + 6176 6459 53188 5 0 1 66 3 4 63 1 0 144 chain 4748 chr4 190214555 + 14100070 14100124 MLT2B1 522 + 367 421 86974 54 chain 51737 chr4 190214555 + 14140395 14140981 L1PA5 6144 + 5553 6139 28958 440 3 4 129 1 0 13 chain 5629 chr4 190214555 + 14217471 14217541 MLT1A 405 + 63 133 82661 70 chain 19599 chr4 190214555 + 14243990 14244348 THE1A 353 + 1 353 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52 40 1 0 5 22 17 30 16 11 10 38 27 17 27 16 17 chain 429860 chr4 190214555 + 14539386 14545215 L1PA8A 6298 + 546 6291 4748 131 12 11 101 1 0 108 0 84 64 2 0 81 3 0 9 7 8 53 0 8 26 4 2 389 1 0 6 0 1 35 6 5 812 0 4 18 0 1 252 0 4 204 0 1 40 1 16 55 1 2 197 2 0 79 1 2 4 1 0 299 0 1 210 3 0 6 1 0 4 0 12 45 18 23 266 0 4 63 6 8 37 1 2 87 23 23 703 0 1 12 31 32 129 0 4 78 0 1 84 0 6 74 1 0 276 219 0 119 22 16 134 0 1 172 chain 82971 chr4 190214555 + 14548082 14549113 L1PA7 6471 + 5465 6469 21023 127 22 1 89 0 1 622 13 7 4 1 0 153 chain 42031 chr4 190214555 + 14549140 14549645 L1PA7 6471 + 5706 6213 33340 430 0 1 16 6 7 53 chain 20866 chr4 190214555 + 14549645 14549895 L1PA7 6471 + 6214 6464 55294 250 chain 17918 chr4 190214555 + 14554974 14555169 L1PA2 6032 + 5835 6030 58731 195 chain 20799 chr4 190214555 + 14607165 14607518 THE1D 372 + 25 360 55360 51 19 0 106 26 31 25 9 10 6 0 1 65 6 0 40 chain 20268 chr4 190214555 + 14623782 14624002 L1PA6 6164 + 5763 5983 56056 220 chain 20386 chr4 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124 0 1 36 4 4 13 4 25 65 0 5 113 7 6 32 6 5 50 0 46 84 12 8 90 18 24 50 1 0 17 22 30 73 0 1 6 8 1 101 9 8 50 0 11 30 59 15 14 0 5 44 24 14 18 6 4 24 3 1 37 11 15 14 7 4 15 chain 20574 chr4 190214555 + 26450679 26450966 L1PA8 5853 + 5566 5847 55676 41 5 3 67 3 2 11 1 0 50 2 1 19 1 0 87 chain 2657 chr4 190214555 + 26468671 26468724 MER53 195 + 141 195 102675 19 12 13 22 chain 33690 chr4 190214555 + 26540863 26541292 L1PA8 5853 + 5428 5853 38933 87 0 1 48 1 0 43 3 1 71 1 0 13 0 1 47 2 1 21 1 0 91 chain 23522 chr4 190214555 + 26564989 26565338 THE1B 368 + 16 368 51550 153 1 0 21 19 24 16 1 0 9 5 4 27 0 1 35 1 0 4 1 2 56 chain 1064 chr4 190214555 + 26591375 26591477 LTR15 485 + 0 103 37457 59 0 1 43 chain 197844 chr4 190214555 + 26591492 26593697 L1PA4 6152 + 3143 5348 9781 22 1 0 629 0 1 194 1 0 97 0 1 1261 chain 3881 chr4 190214555 + 26594447 26594819 LTR15 485 + 103 481 37457 47 0 2 208 0 3 93 0 1 24 chain 10534 chr4 190214555 + 26608919 26609036 L1PA4 6152 + 5856 5976 69353 7 0 3 110 chain 49039 chr4 190214555 + 26628442 26628970 L1PA3long 6157 + 4078 4606 29938 528 chain 492175 chr4 190214555 + 26640436 26646693 L1PA6 6164 + 0 5900 3367 371 25 32 56 5 6 44 2 1 57 1 0 18 1 0 861 1 0 157 0 1 818 0 1 123 0 3 416 0 1 223 0 1 261 0 3 271 0 1 228 0 1 228 0 1 341 82 0 787 0 4 18 313 0 221 0 3 239 0 14 89 chain 94531 chr4 190214555 + 26677970 26679887 THE1C-int 1605 + 0 1599 18960 12 4 3 17 11 13 65 0 54 216 633 0 30 11 7 27 10 17 287 1 0 3 3 0 254 0 1 237 1 261 95 chain 522244 chr4 190214555 + 26693921 26700024 L1PA5 6144 + 3 6141 2169 344 0 1 271 2 5 541 24 59 10 0 1 213 2 0 230 9 10 773 0 1 709 1 2 106 0 1 140 9 4 318 0 1 1388 4 4 152 0 1 30 7 7 810 4 0 6 chain 68620 chr4 190214555 + 26735807 26736551 L1PA2 6032 + 5280 6026 24307 340 0 2 404 chain 29193 chr4 190214555 + 26771056 26771612 L1MB1 2102 + 1467 2035 43054 96 58 56 51 4 5 32 0 1 30 1 0 9 1 0 7 1 0 23 14 18 56 15 29 59 2 0 6 6 9 53 4 2 6 2 0 20 chain 3204 chr4 190214555 + 26789277 26789378 MLT1J2 417 + 71 172 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244 chain 30049 chr4 190214555 + 27416344 27416712 THE1B-int 1605 + 2 370 42003 368 chain 40348 chr4 190214555 + 27442698 27443577 MLT2A2 560 + 2 560 34413 178 1 0 46 332 0 65 6 7 101 3 14 147 chain 3832 chr4 190214555 + 27485485 27485532 MADE1 96 + 49 96 92623 47 chain 246519 chr4 190214555 + 27496577 27500000 L1PA10 4194 + 250 3632 8315 18 9 7 12 174 124 71 12 0 9 0 9 266 0 3 117 1 0 147 2 0 443 15 13 323 0 1 409 0 4 101 0 1 295 0 1 47 0 4 61 1 2 487 0 1 4 4 1 5 0 3 166 0 3 224 chain 87272 chr4 190214555 + 27500000 27501485 L1PA8A 6298 + 4375 6290 20181 141 5 6 442 0 728 20 6 33 17 8 0 69 0 1 39 7 9 84 320 0 170 2 0 51 7 8 97 chain 86004 chr4 190214555 + 27511671 27512650 L1PA4 6152 + 4535 5520 20437 129 0 1 453 0 1 164 0 4 233 chain 31907 chr4 190214555 + 27561290 27561702 L1PA8 5853 + 5447 5853 40406 56 0 3 58 1 0 45 2 0 73 1 0 10 4 0 7 0 1 40 2 1 19 1 0 93 chain 50205 chr4 190214555 + 27582208 27582794 L1PA6 6164 + 5573 6159 29481 586 chain 6794 chr4 190214555 + 27623950 27624227 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21 1 0 9 5 4 16 chain 33361 chr4 190214555 + 28281387 28281830 LTR2 463 + 7 463 39205 54 0 3 43 20 23 24 3 2 70 0 5 137 0 1 64 0 2 28 chain 38919 chr4 190214555 + 28286091 28286552 LTR2 463 + 0 462 35415 368 0 1 93 chain 12770 chr4 190214555 + 28287114 28287451 L1PB1 5432 + 5114 5422 65486 24 1 0 6 1 0 12 31 25 36 26 29 6 5 0 29 38 27 18 3 1 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 chain 11012 chr4 190214555 + 28299529 28299677 L1PA10 4194 + 4006 4150 68540 70 1 0 40 3 0 34 chain 41794 chr4 190214555 + 28302957 28303556 LTR12 884 + 1 783 33494 24 1 0 53 1 67 216 18 1 15 2 0 197 2 106 52 1 34 17 chain 40021 chr4 190214555 + 28309842 28310433 LTR12 884 + 0 873 34639 25 1 0 52 0 41 37 42 1 163 2 27 9 0 22 170 0 103 30 10 143 50 chain 1354 chr4 190214555 + 28309958 28309999 LTR12 884 + 288 329 77712 41 chain 467466 chr4 190214555 + 28406863 28413413 L1PA5 6144 + 59 6140 3925 229 3 4 741 1 0 370 10 20 577 1089 590 244 1 2 328 2 1 37 1 0 71 3 10 382 0 1 430 0 6 178 0 2 93 0 6 913 1 0 846 chain 225235 chr4 190214555 + 28492421 28495345 L1PA8 5853 + 2880 5853 8883 10 1 0 43 23 26 255 0 1 268 8 13 73 1 2 520 0 1 242 0 1 249 0 43 95 0 1 7 0 1 274 0 1 4 3 1 83 6 1 145 1 5 319 1 0 25 0 1 19 8 6 62 17 15 50 2 1 17 1 0 70 0 1 22 chain 20704 chr4 190214555 + 28518047 28518311 AluSp 311 + 38 302 55494 68 1 2 31 3 2 161 chain 91091 chr4 190214555 + 28525183 28526181 L1PA3long 6157 + 5159 6157 19487 998 chain 26402 chr4 190214555 + 28529548 28529879 L1PA7 6471 + 6136 6469 47117 169 3 4 84 0 1 75 chain 122500 chr4 190214555 + 28581360 28582927 THE1A-int 1579 + 0 1579 15114 137 0 1 154 2 15 116 1 0 9 1 2 69 4 3 217 1 10 327 30 20 499 chain 47281 chr4 190214555 + 28585482 28586056 LTR10C 591 + 0 591 30545 235 0 23 67 0 1 4 1 0 180 7 1 80 chain 14680 chr4 190214555 + 28605374 28605589 L1PA7 6471 + 6256 6464 62698 56 10 11 81 9 4 51 3 0 5 chain 2732 chr4 190214555 + 28771726 28771809 MER58A 224 + 50 157 102108 27 38 62 18 chain 11118 chr4 190214555 + 28789626 28789763 MER50 708 + 464 600 68380 5 1 0 131 chain 2994 chr4 190214555 + 28918013 28918051 MSTA 426 + 385 426 99888 33 0 3 5 chain 11265 chr4 190214555 + 28927435 28927668 L1PB1 5432 + 5187 5391 68141 33 2 1 16 1 0 44 1 0 15 3 0 17 9 0 8 27 16 9 2 0 24 1 0 21 chain 42222 chr4 190214555 + 28944031 28944514 L1PA5 6144 + 5661 6142 33235 344 0 1 129 3 0 7 chain 72071 chr4 190214555 + 28958436 28959309 L1P2 5180 + 1656 2530 23519 564 9 10 300 chain 11695 chr4 190214555 + 28962489 28962641 L1PA16 3655 + 3421 3575 67408 96 0 2 56 chain 5851 chr4 190214555 + 29018245 29018345 MSTA 426 + 313 414 81689 63 16 17 21 chain 79192 chr4 190214555 + 29047417 29048716 LTR12C 1709 + 83 1709 21800 18 9 0 5 2 0 28 18 18 38 99 107 168 7 0 139 10 11 39 0 119 64 1 0 74 0 207 99 18 11 75 24 26 57 0 13 211 33 36 63 chain 119750 chr4 190214555 + 29117170 29118614 LTR12C 1709 + 0 1702 15573 301 1 0 418 0 159 234 1 0 5 3 1 106 0 4 172 0 102 45 3 0 155 chain 13121 chr4 190214555 + 29167617 29167817 L1MA6 2487 + 2070 2254 64894 155 28 12 17 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190214555 + 29836874 29837035 Tigger3a 397 + 27 252 76546 25 48 107 20 2 7 66 chain 57262 chr4 190214555 + 29864203 29864958 MER4-int 2692 + 1939 2692 27174 62 1 0 12 1 0 112 1 6 139 2 0 10 8 4 9 2 1 340 0 1 41 0 1 15 chain 504726 chr4 190214555 + 29929337 29935911 L1PA7 6471 + 19 6374 2981 392 11 0 236 11 11 18 4 6 8 12 0 182 0 1 476 7 6 207 0 1 211 195 8 852 30 10 50 2 1 178 0 1 15 6 10 604 1 0 236 6 5 90 1 2 224 1 0 608 0 4 48 0 1 576 0 1 131 3 4 192 0 4 73 4 3 399 8 10 168 1 0 4 6 1 87 chain 10298 chr4 190214555 + 30046272 30046397 L1PA15 4387 + 3371 3496 69490 125 chain 147274 chr4 190214555 + 30046397 30048767 L1PA4 6152 + 3157 5521 12530 426 3 0 106 1 0 18 1 0 4 0 1 66 0 1 856 3 0 886 chain 9895 chr4 190214555 + 30069687 30069806 Tigger3c 601 + 451 570 70624 119 chain 108594 chr4 190214555 + 30092525 30093922 LTR12C 1709 + 0 1709 17234 277 8 9 140 19 20 150 2 1 231 0 159 23 0 166 48 0 4 135 19 1 345 chain 48065 chr4 190214555 + 30147766 30148470 MER4E1 777 + 0 769 30272 17 2 3 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432 0 1 218 5 10 102 chain 222840 chr4 190214555 + 30908513 30911317 L1PA7 6471 + 3687 6469 8960 223 48 0 90 1 3 557 0 1 113 0 4 147 0 1 643 0 5 29 0 3 95 0 1 16 2 6 36 1 8 15 8 6 618 10 9 125 0 1 27 chain 51658 chr4 190214555 + 30927312 30927873 SVA_D 2077 + 1518 2077 28978 549 2 0 10 chain 14659 chr4 190214555 + 30943629 30943837 MER30 238 + 0 238 62724 14 4 22 73 4 16 113 chain 4803 chr4 190214555 + 31161122 31161193 MADE1 96 + 9 96 86681 22 3 19 46 chain 26813 chr4 190214555 + 31172989 31173415 Tigger3b 1229 + 265 678 46519 30 0 9 24 1 0 45 10 13 5 3 0 123 28 8 47 3 0 9 0 2 11 0 1 43 1 0 43 chain 15809 chr4 190214555 + 31175355 31175693 Tigger3 1187 + 750 1087 61276 47 1 0 30 7 0 8 1 8 59 33 34 21 10 0 16 47 56 58 chain 49598 chr4 190214555 + 31201695 31202395 LTR12_ 688 + 0 688 29727 103 37 0 39 1 2 127 6 0 261 13 10 10 16 49 87 chain 21338 chr4 190214555 + 31254527 31254822 L1PA8 5853 + 5554 5853 54715 6 0 6 44 2 0 67 4 3 60 2 1 17 0 2 93 chain 9627 chr4 190214555 + 31259585 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chr4 190214555 + 38340896 38341166 MER1A 529 + 135 391 55268 226 14 0 30 chain 12323 chr4 190214555 + 38393443 38393621 MSTA-int 1630 + 1437 1622 66261 79 0 6 64 11 12 24 chain 21319 chr4 190214555 + 38416128 38416382 AluSp 311 + 5 276 54737 81 0 1 127 0 16 46 chain 100043 chr4 190214555 + 38438695 38439806 L1PA3long 6157 + 5045 6157 18296 261 0 1 850 chain 524769 chr4 190214555 + 38476493 38482542 L1PA5 6144 + 3 6139 2062 930 0 2 131 0 2 167 1 2 509 0 1 253 0 1 378 8 12 305 0 5 51 0 1 1109 0 18 467 0 4 640 8 0 178 0 1 730 0 55 184 chain 21882 chr4 190214555 + 38520460 38520807 THE1B 368 + 0 367 53999 44 5 20 17 5 1 90 1 0 26 26 43 6 7 0 120 chain 38497 chr4 190214555 + 38533603 38534148 MLT2A2 560 + 0 560 35712 11 4 8 84 1 0 29 1 2 34 2 4 158 6 7 69 0 11 81 1 0 11 3 1 50 chain 18464 chr4 190214555 + 38608813 38609011 AluYa5 310 + 110 309 58142 21 0 1 177 chain 113755 chr4 190214555 + 38626722 38628102 LTR12C 1709 + 0 1709 16582 262 0 2 386 0 278 143 0 47 106 0 4 21 1 0 363 14 13 84 chain 2943 chr4 190214555 + 38771146 38771182 MLT2A2 560 + 520 560 100484 30 0 4 6 chain 77615 chr4 190214555 + 38777510 38778429 L1PA7 6471 + 5518 6457 22180 79 1 0 5 0 1 11 0 3 656 0 17 167 chain 5998 chr4 190214555 + 38803309 38803385 MER50 708 + 593 669 81080 76 chain 153671 chr4 190214555 + 38806868 38808686 SVA_D 2077 + 62 2064 12133 82 0 1 572 76 0 199 1 38 49 0 178 127 0 49 407 5 0 300 chain 3817 chr4 190214555 + 38821561 38821642 MER2B 336 + 241 323 92734 30 25 26 26 chain 535768 chr4 190214555 + 38847305 38853390 L1PA5 6144 + 0 6144 1579 211 0 1 940 1 4 26 0 1 511 0 1 413 0 1 345 0 41 210 4 12 1384 6 0 394 0 8 1363 0 1 277 chain 28137 chr4 190214555 + 38916447 38916817 L1PA7 6471 + 6093 6467 44659 7 0 3 119 6 7 18 1 2 64 0 1 97 1 0 40 0 1 9 2 0 6 chain 24026 chr4 190214555 + 38917934 38918230 AluSp 311 + 0 288 50758 120 8 0 168 chain 3861 chr4 190214555 + 38982707 38982750 MLT2A2 560 + 517 560 92410 43 chain 132680 chr4 190214555 + 39001571 39003043 L1PA3long 6157 + 4684 6157 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0 29 35 45 21 0 2 102 chain 3855 chr4 190214555 + 39340407 39340452 LTR54 533 + 425 470 92433 45 chain 16748 chr4 190214555 + 39359312 39360007 L1PB1 5432 + 5069 5422 60097 34 5 2 9 3 0 15 6 5 13 1 0 10 19 13 50 2 1 14 6 1 45 342 27 19 23 19 24 1 0 21 1 0 13 1 0 18 chain 126076 chr4 190214555 + 39370512 39372065 THE1B-int 1605 + 16 1605 14542 266 0 2 144 5 30 69 0 1 136 0 7 575 0 1 358 chain 10645 chr4 190214555 + 39532079 39532214 THE1B 368 + 3 173 69136 39 0 36 90 1 0 5 chain 125980 chr4 190214555 + 39532573 39534666 THE1B-int 1605 + 0 1605 14563 368 200 1 60 315 27 199 1 0 950 chain 266144 chr4 190214555 + 39592670 39595564 L1PA3long 6157 + 3261 6157 7796 927 0 2 1967 chain 15212 chr4 190214555 + 39602976 39603189 Tigger4a 237 + 0 235 62025 25 1 9 75 1 8 70 0 7 41 chain 3697 chr4 190214555 + 39615404 39615531 L1MC1 2226 + 2083 2195 93622 16 42 30 13 1 0 4 10 9 29 1 0 11 chain 5188 chr4 190214555 + 39621012 39621072 U7 62 + 1 61 84735 60 chain 7819 chr4 190214555 + 39651868 39652004 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40188415 MIR 256 + 88 162 96977 36 23 24 14 chain 56706 chr4 190214555 + 40271742 40272484 MER4E1 777 + 0 766 27359 17 3 0 92 5 0 55 0 5 11 1 0 33 0 1 28 0 1 8 1 0 78 0 19 86 1 2 104 4 10 118 0 1 97 chain 22767 chr4 190214555 + 40317625 40317946 AluY 311 + 0 282 52723 22 4 0 87 1 0 17 28 0 37 6 0 119 chain 4264 chr4 190214555 + 40323947 40324048 MER5A1 166 + 0 115 89743 39 13 25 14 15 17 20 chain 7167 chr4 190214555 + 40374466 40374574 MLT1B 390 + 12 115 77048 12 5 0 2 0 1 83 1 0 5 chain 34830 chr4 190214555 + 40382359 40382938 L1M1 2793 + 1650 2212 38135 16 11 0 132 1 0 4 13 14 12 5 2 8 0 1 62 0 5 6 9 1 20 2 0 127 0 1 9 31 35 61 5 1 45 chain 113099 chr4 190214555 + 40405588 40407449 THE1B-int 1605 + 0 1599 16665 90 1 2 131 5 6 196 320 31 174 6 9 36 2 1 19 18 38 20 3 0 202 1 2 164 46 48 177 0 1 43 0 1 71 0 1 136 chain 27970 chr4 190214555 + 40407454 40407808 THE1B 368 + 0 368 44917 38 2 17 121 1 0 192 chain 5619 chr4 190214555 + 40463717 40463797 MADE1 96 + 0 96 82706 32 3 19 45 chain 4838 chr4 190214555 + 40556512 40556579 MADE1 96 + 13 96 86484 20 1 17 46 chain 2667 chr4 190214555 + 40590692 40590791 L1MB5 1630 + 1280 1382 102616 13 4 6 13 43 44 26 chain 23771 chr4 190214555 + 40600718 40601002 AluSp 311 + 14 299 51165 96 0 1 188 chain 24512 chr4 190214555 + 40610662 40611018 THE1A 353 + 0 353 50003 84 2 1 26 1 0 122 9 9 13 4 2 21 1 0 15 0 2 58 chain 3586 chr4 190214555 + 40696440 40696481 L1MC1 2226 + 1924 1965 94536 41 chain 4719 chr4 190214555 + 40709901 40709986 L1MB8 1703 + 1501 1587 87134 29 6 7 29 6 6 15 chain 19882 chr4 190214555 + 40716291 40716544 MER47A 366 + 97 353 56559 17 0 1 157 0 1 18 0 1 61 chain 22158 chr4 190214555 + 40753696 40754041 THE1B 368 + 0 368 53626 44 0 15 59 7 6 42 7 6 26 8 6 10 0 4 10 7 15 125 chain 14741 chr4 190214555 + 40787177 40787337 SVA_A 1864 + 1703 1863 62612 160 chain 35260 chr4 190214555 + 40885146 40885604 LTR71A 459 + 0 459 37857 177 0 1 20 5 6 172 8 7 76 chain 3847 chr4 190214555 + 40960854 40960894 MLT1J 494 + 99 139 92519 40 chain 27192 chr4 190214555 + 40961354 40961659 L1PA2 6032 + 5729 6028 45975 292 6 0 7 chain 4569 chr4 190214555 + 40970789 40970846 MER81 114 + 38 95 87972 57 chain 36676 chr4 190214555 + 40996842 40997335 LOR1a 498 + 0 491 36969 44 0 1 173 6 0 210 9 12 51 chain 57759 chr4 190214555 + 41021348 41022119 LTR12 884 + 0 869 27033 25 1 0 38 0 41 85 41 0 85 13 102 281 0 10 202 chain 62425 chr4 190214555 + 41023443 41024407 L1PA14 3548 + 2536 3474 25769 153 1 0 202 0 3 19 2 0 5 1 3 17 3 1 3 1 0 9 1 0 4 1 0 38 9 7 5 2 0 60 4 2 45 10 6 13 2 0 6 1 0 4 1 0 6 0 1 73 1 0 111 18 13 29 13 18 6 1 0 19 1 0 38 6 0 10 1 0 9 chain 38832 chr4 190214555 + 41024455 41025115 LTR76 689 + 0 645 35482 51 79 81 76 0 1 14 16 8 22 13 20 13 1 0 28 2 0 198 15 0 96 0 1 36 chain 11628 chr4 190214555 + 41035674 41035884 MER2 342 + 6 216 67519 42 28 32 36 2 0 29 6 4 67 chain 123244 chr4 190214555 + 41048640 41050114 SVA_C 1631 + 0 1611 14984 22 0 3 5 1 0 7 1 0 250 0 10 209 0 77 204 0 40 37 1 0 4 45 0 16 14 14 92 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58 86118 58 chain 79112 chr4 190214555 + 41402117 41402986 L1PA3long 6157 + 5287 6157 21834 108 0 1 761 chain 7165 chr4 190214555 + 41458017 41458169 L1MA3 4352 + 4197 4346 77055 38 4 0 47 8 6 15 24 27 16 chain 17561 chr4 190214555 + 41475647 41475879 L1PA8 5853 + 5625 5853 59164 51 4 3 11 1 0 53 1 0 17 2 1 92 chain 16552 chr4 190214555 + 41564708 41565053 THE1D 372 + 2 357 60307 49 2 0 16 48 49 50 20 19 6 0 1 12 19 34 40 11 7 72 chain 4910 chr4 190214555 + 41593775 41593841 MER58A 224 + 149 212 86112 6 3 0 57 chain 25972 chr4 190214555 + 41711831 41712221 L1PA8 5853 + 5464 5846 47758 58 1 0 38 13 12 38 2 0 68 13 11 51 2 1 19 2 1 85 chain 19259 chr4 190214555 + 41720556 41720835 MER41B 635 + 25 596 57280 101 0 1 51 1 288 14 5 4 65 12 17 30 chain 8344 chr4 190214555 + 41771778 41771878 L1PA7 6471 + 6369 6466 74040 89 3 0 8 chain 11677 chr4 190214555 + 41780167 41780309 AluSq2 311 + 160 302 67434 142 chain 21979 chr4 190214555 + 41849441 41849710 L1PA16 3655 + 3306 3579 53867 211 0 4 58 chain 260985 chr4 190214555 + 41905564 41908416 L1PA3long 6157 + 3306 6157 7944 2600 1 0 251 chain 24411 chr4 190214555 + 41920440 41920774 THE1C 375 + 0 335 50152 125 3 0 5 5 9 37 1 2 5 1 0 152 chain 20221 chr4 190214555 + 41921884 41922120 THE1C-int 1605 + 1361 1597 56118 236 chain 14840 chr4 190214555 + 41930106 41930349 MER51A 677 + 0 215 62463 123 0 1 17 0 1 28 6 9 10 40 7 19 chain 6214 chr4 190214555 + 41934224 41934318 MER51A 677 + 181 267 80303 18 10 0 13 0 2 53 chain 104447 chr4 190214555 + 41968102 41969659 THE1C-int 1605 + 20 1596 17765 21 1 0 7 4 5 59 13 70 19 9 14 225 91 16 13 0 10 84 2 6 58 15 16 78 5 4 26 0 9 85 30 35 142 1 0 150 1 2 250 0 4 168 chain 119994 chr4 190214555 + 41972399 41973959 THE1B-int 1605 + 0 1595 15538 107 0 3 31 0 1 4 1 0 272 1 0 10 11 36 197 0 8 581 10 11 61 9 7 33 0 1 23 0 1 150 1 0 58 chain 533433 chr4 190214555 + 42041761 42048239 L1PA7 6471 + 0 6469 1683 396 7 8 195 37 24 165 2 0 673 0 9 289 0 2 465 4 14 392 9 0 12 0 1 63 0 3 245 0 1 138 0 4 502 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15 16 chain 15496 chr4 190214555 + 58694969 58695266 THE1B 368 + 0 311 61661 108 19 27 19 0 2 20 0 2 6 55 59 61 2 0 7 chain 13001 chr4 190214555 + 58704248 58704419 THE1B 368 + 194 368 65114 5 0 1 10 0 4 16 1 0 12 1 0 126 chain 30889 chr4 190214555 + 58749619 58750283 L1P2 5180 + 1701 2455 41228 124 14 6 18 240 338 268 chain 44172 chr4 190214555 + 58778656 58779129 L1HS 6032 + 548 1021 32034 473 chain 75082 chr4 190214555 + 58817805 58818677 MER11D 897 + 0 897 22824 574 0 23 33 0 1 71 0 1 194 chain 206423 chr4 190214555 + 58851204 58853544 L1PA4 6152 + 3665 6006 9490 1340 0 1 1000 chain 12421 chr4 190214555 + 58922953 58923291 L1PB1 5432 + 5107 5413 66103 10 5 0 21 1 0 7 32 25 10 0 5 32 22 20 44 1 0 9 31 18 19 8 5 14 2 0 24 1 0 21 1 0 12 2 1 9 chain 224412 chr4 190214555 + 58928627 58931083 L1PA2 6032 + 2287 4744 8911 999 0 1 1457 chain 24887 chr4 190214555 + 59013891 59014249 MLT2A1 477 + 7 357 49462 26 8 0 136 4 1 9 0 1 24 4 5 52 10 11 85 chain 45756 chr4 190214555 + 59027810 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46 0 1 403 0 1 268 7 10 49 0 2 41 0 2 167 1 0 42 0 1 284 1 8 386 0 1 71 0 1 28 0 4 305 1 5 323 6 1 6 0 5 262 5 7 116 1 0 203 25 159 15 38 0 13 2 0 78 0 1 1001 3 0 114 2 1 32 14 770 459 chain 29314 chr4 190214555 + 60169767 60170086 AluYb8 318 + 0 314 42856 126 5 0 188 chain 37492 chr4 190214555 + 60186408 60186859 L1PA7 6471 + 6009 6461 36404 304 7 8 140 chain 31388 chr4 190214555 + 60255610 60256035 LTR2 463 + 0 463 40821 256 3 26 61 0 16 18 4 5 29 1 0 28 1 0 24 chain 37145 chr4 190214555 + 60278420 60278835 L1PA4 6152 + 5727 6142 36647 415 chain 5124 chr4 190214555 + 60288104 60288172 L1PA8 5853 + 5495 5564 85045 21 1 2 46 chain 9956 chr4 190214555 + 60288173 60288297 L1PA8 5853 + 5564 5682 70515 44 2 0 41 4 0 33 chain 10673 chr4 190214555 + 60288298 60288455 L1PA8 5853 + 5682 5836 69094 6 4 3 49 2 1 19 1 0 76 chain 2292 chr4 190214555 + 60318177 60318201 L1PA8 5853 + 5530 5554 104762 24 chain 3018 chr4 190214555 + 60318220 60318256 L1PA8 5853 + 5568 5604 99663 36 chain 6080 chr4 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1248 1309 85660 61 chain 35243 chr4 190214555 + 60821337 60821865 MLT2A2 560 + 8 552 37871 93 1 0 105 11 13 76 7 0 7 4 13 73 4 5 13 0 11 67 7 8 60 chain 22148 chr4 190214555 + 60823953 60824260 MER1A 529 + 224 529 53637 75 0 8 149 25 15 58 chain 205651 chr4 190214555 + 60851283 60853777 L1PA7 6471 + 3966 6464 9514 244 0 2 267 4 14 317 7 0 169 1 0 408 0 1 148 0 1 11 0 1 72 1 0 838 2 0 5 chain 4595 chr4 190214555 + 60879405 60879516 L1MB7 1623 + 1389 1479 87814 37 47 26 27 chain 94195 chr4 190214555 + 60918621 60919693 L1PA4 6152 + 3428 4524 19018 88 1 0 210 0 1 17 0 1 43 0 23 713 chain 21439 chr4 190214555 + 60947853 60948101 L1PA4 6152 + 5904 6151 54595 99 1 0 148 chain 81847 chr4 190214555 + 60976048 60977023 L1P1 4361 + 950 1932 21272 354 0 4 101 1 6 19 2 0 498 chain 21395 chr4 190214555 + 60984476 60984708 L1PA2 6032 + 5800 6032 54637 232 chain 473698 chr4 190214555 + 61011672 61017155 L1PA4 6152 + 19 5515 3775 679 0 15 327 1 0 906 1 0 370 1 0 108 8 1 269 0 5 643 1 3 343 0 1 1826 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42425 132 2 0 186 chain 4573 chr4 190214555 + 79331750 79331802 MER50 708 + 501 553 87953 52 chain 22465 chr4 190214555 + 79346062 79346407 THE1B 368 + 0 351 53169 169 1 0 19 54 61 102 chain 24366 chr4 190214555 + 79347974 79348319 THE1B 368 + 0 356 50222 169 1 0 29 35 45 55 0 2 56 chain 4243 chr4 190214555 + 79452382 79452433 MER53 195 + 126 177 89859 51 chain 33789 chr4 190214555 + 79493169 79493671 MLT2A2 560 + 1 560 38860 167 41 40 100 0 32 27 0 15 17 3 14 87 2 1 4 0 1 54 chain 162652 chr4 190214555 + 79519355 79521214 L1PA4 6152 + 2185 4039 11567 1024 7 1 810 0 1 18 chain 42859 chr4 190214555 + 79561839 79562384 MLT2A2 560 + 0 559 32861 389 0 1 12 0 11 72 0 3 46 1 0 25 chain 31322 chr4 190214555 + 79587394 79587760 L1PA5 6144 + 5783 6143 40873 352 6 0 8 chain 14348 chr4 190214555 + 79661232 79661603 THE1B 368 + 0 368 63114 15 2 0 24 65 48 18 8 14 44 61 63 74 11 19 49 chain 16183 chr4 190214555 + 79672052 79672244 L1PBa 3878 - 1724 1916 60771 192 chain 35009 chr4 190214555 + 79674988 79675449 L1PA5 6144 + 5677 6144 38013 19 1 2 214 4 0 31 9 18 30 7 0 8 0 7 138 chain 39893 chr4 190214555 + 79696428 79696935 LTR7B 505 + 0 490 34743 200 34 0 23 8 26 40 2 1 200 chain 566067 chr4 190214555 + 79704552 79710581 L1HS 6032 + 3 6032 62 6029 chain 30308 chr4 190214555 + 79730217 79730611 MLT2A1 477 + 0 396 41752 44 0 2 122 5 2 9 0 1 24 0 1 179 0 1 11 chain 7207 chr4 190214555 + 79765623 79765711 L1PA8 5853 + 5765 5853 76926 88 chain 189806 chr4 190214555 + 79792684 79795102 L1PA8A 6298 + 3837 6289 10132 41 0 1 353 1 2 74 0 3 57 6 7 137 0 2 161 8 12 138 8 7 654 1 0 97 0 3 70 1 4 17 1 0 221 0 7 229 0 10 39 10 12 94 chain 35657 chr4 190214555 + 79829024 79829986 MER75 514 + 1 514 37624 91 0 3 122 2 0 5 478 30 237 2 0 25 chain 33792 chr4 190214555 + 79919356 79919860 MLT2A2 560 + 0 560 38856 169 56 64 75 0 32 15 0 1 43 4 15 134 0 4 8 chain 567006 chr4 190214555 + 79937715 79943746 L1HS 6032 + 2 6030 38 72 0 1 601 4 0 5354 chain 566727 chr4 190214555 + 79966907 79972933 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0 4 1 0 12 6 4 23 1 0 21 1 0 13 1 0 18 chain 127139 chr4 190214555 + 82159984 82161435 L1PA5 6144 + 4672 6129 14373 754 0 1 46 0 4 504 15 15 94 0 1 38 chain 67422 chr4 190214555 + 82167750 82168591 L1PA7 6471 + 5391 6230 24592 140 0 1 88 2 1 218 8 9 223 3 1 59 1 0 99 chain 535946 chr4 190214555 + 82175410 82181538 L1PA4 6152 + 8 6138 1567 183 0 1 530 1 0 717 0 1 1532 0 2 5 2 0 198 1 0 886 2 1 286 0 1 948 1 2 591 0 1 245 chain 472093 chr4 190214555 + 82184122 82190278 L1PA7 6471 + 5 6469 3809 175 0 1 4 1 0 16 14 13 11 51 52 44 78 279 121 5 15 16 4 6 7 2 0 28 1 76 177 0 21 65 7 13 1023 17 7 85 2 1 483 0 3 331 13 16 390 1 2 11 1 0 36 4 5 471 11 4 28 6 7 49 0 1 102 0 1 405 0 2 444 0 1 167 0 1 399 2 1 13 0 1 5 1 0 305 1 0 360 0 1 163 chain 39995 chr4 190214555 + 82247742 82248262 MER1A 529 + 1 514 34663 317 0 1 133 17 9 53 chain 35210 chr4 190214555 + 82251776 82252159 L1PA3long 6157 + 5774 6157 37889 383 chain 49820 chr4 190214555 + 82265669 82266247 L1PA5 6144 + 5546 6142 29628 193 0 18 385 chain 515936 chr4 190214555 + 82271479 82280100 L1PA7 6471 + 2 6467 2471 241 0 1 9 6 13 139 1 0 7 1 0 61 1 0 90 11 8 171 10 15 75 1 0 372 0 1 5 0 4 39 15 34 69 0 1 738 7 9 60 1 0 4 0 1 472 1 0 57 1 2 452 0 2 62 0 2 192 2237 0 170 0 2 342 1 2 5 1 0 280 0 1 61 0 1 78 0 2 171 0 4 55 0 8 82 0 4 60 0 17 559 0 1 307 0 2 484 0 2 357 chain 84569 chr4 190214555 + 82311839 82313227 L1PB3 3668 + 2265 3613 20705 71 10 12 76 0 3 240 1 0 251 5 7 6 2 0 10 7 9 34 5 7 4 0 1 7 2 0 75 0 1 74 65 44 80 14 13 100 2 1 87 54 34 16 3 1 27 16 13 13 2 1 12 4 5 13 chain 24548 chr4 190214555 + 82316888 82317239 THE1A 353 + 0 353 49950 129 1 2 71 13 12 78 3 5 56 chain 130998 chr4 190214555 + 82317239 82318817 THE1A-int 1579 + 0 1574 13927 612 0 2 877 6 0 83 chain 2884 chr4 190214555 + 82318992 82319023 L1MC1 2226 + 1354 1385 100961 31 chain 55729 chr4 190214555 + 82326042 82326683 L1PA5 6144 + 5496 6130 27654 141 7 0 493 chain 124920 chr4 190214555 + 82390547 82393637 Charlie3 2679 + 649 2437 14723 11 0 1 33 0 8 209 640 21 182 4 41 46 3 7 88 0 1 194 316 0 144 0 2 215 0 1 234 560 139 211 chain 50730 chr4 190214555 + 82415827 82416480 LTR12_ 688 + 0 688 29301 248 0 1 93 0 24 81 13 11 55 1 0 34 5 7 16 0 11 107 chain 6029 chr4 190214555 + 82470278 82470350 MLT1G3 592 + 478 550 80972 72 chain 43730 chr4 190214555 + 82473316 82474030 LTR17 781 + 0 781 32297 394 166 209 51 0 2 62 1 23 40 chain 197569 chr4 190214555 + 82476040 82478317 HERV17-int 4347 + 13 2275 9793 14 1 0 51 1 0 34 2 0 27 1 0 473 20 8 8 7 0 29 1 0 150 0 9 149 1 0 467 0 1 20 16 17 805 chain 51544 chr4 190214555 + 82479337 82480022 LTR17 781 + 0 728 29024 406 2 1 65 3 0 47 4 3 10 2 1 15 9 58 122 chain 40491 chr4 190214555 + 82512897 82513389 L1P3 4156 + 755 1248 34314 78 10 11 154 0 1 4 1 0 245 chain 3352 chr4 190214555 + 82532673 82532711 LTR37A 408 + 116 154 96578 38 chain 42386 chr4 190214555 + 82547615 82548235 L1PA16 3655 + 3004 3619 33139 181 4 5 11 1 0 89 2 0 225 0 4 43 36 34 7 5 0 16 chain 30584 chr4 190214555 + 82558798 82559250 LTR7B 505 + 0 495 41485 94 0 3 8 0 10 60 0 38 12 3 27 28 29 0 85 1 0 76 14 13 20 0 1 5 2 0 15 chain 9354 chr4 190214555 + 82575916 82576036 MER85 139 + 8 139 71802 82 0 10 9 0 1 29 chain 7666 chr4 190214555 + 82607374 82607560 MLT1C 463 + 269 456 75715 26 70 72 71 1 0 18 chain 16146 chr4 190214555 + 82651300 82651603 L1PB1 5432 + 5144 5422 60818 11 8 4 9 2 0 30 0 1 21 2 1 15 0 1 44 1 0 15 1 0 4 2 0 9 8 0 17 9 6 14 2 0 24 1 0 23 1 0 11 1 0 18 chain 46699 chr4 190214555 + 82659809 82660368 L1PA7 6471 + 2441 3003 30772 79 0 2 102 7 8 371 chain 14028 chr4 190214555 + 82714662 82714890 Tigger4a 237 + 1 237 63549 27 22 30 4 1 0 117 3 4 54 chain 5710 chr4 190214555 + 82763732 82763835 MLT1B 390 + 283 390 82291 36 24 28 43 chain 27945 chr4 190214555 + 82777933 82778263 L1PA8A 6298 + 5897 6226 44959 8 1 0 321 chain 3106 chr4 190214555 + 82804450 82804485 MIR 256 + 196 231 98726 35 chain 38967 chr4 190214555 + 82808657 82809671 L1MA3 4352 + 3701 4352 35380 95 1 17 247 441 74 102 3 0 22 2 0 24 2 1 5 1 0 29 1 0 5 12 8 22 chain 141409 chr4 190214555 + 82831787 82833500 L1PA6 6164 + 4379 6108 12989 92 1 0 20 0 1 8 1 0 12 0 4 116 0 1 298 1 0 236 0 5 836 0 8 92 chain 14102 chr4 190214555 + 82846473 82846704 Tigger2 2703 + 2273 2516 63452 102 7 19 15 11 27 11 16 0 69 chain 24167 chr4 190214555 + 82887776 82888046 AluYc 301 + 0 272 50548 120 0 2 150 chain 18244 chr4 190214555 + 83023036 83023374 THE1D 372 + 0 334 58419 50 9 0 24 4 5 25 0 1 61 34 36 23 1 0 50 24 26 33 chain 56888 chr4 190214555 + 83023374 83024112 L1PA8 5853 + 5108 5853 27303 439 0 1 16 1 0 44 2 0 16 0 1 49 8 18 48 2 1 19 1 0 93 chain 5380 chr4 190214555 + 83078624 83078709 L1MCa 1829 + 1466 1550 83795 17 10 9 58 chain 81169 chr4 190214555 + 83084746 83085693 LTR13A 966 + 0 953 21396 76 0 4 576 5 7 290 chain 15807 chr4 190214555 + 83099539 83100509 MSTA 426 + 0 414 61279 17 0 1 19 7 8 50 33 55 48 686 103 12 2 5 96 chain 17760 chr4 190214555 + 83102563 83102804 Tigger1 2417 + 1587 1837 58941 35 0 1 166 7 15 33 chain 27797 chr4 190214555 + 83129869 83130164 AluYa5 310 + 15 310 45188 295 chain 5465 chr4 190214555 + 83158808 83158878 MER2 342 + 142 223 83378 21 0 11 49 chain 2739 chr4 190214555 + 83162367 83162470 MIR 256 + 5 123 102047 25 57 72 21 chain 531659 chr4 190214555 + 83164062 83170201 L1PA5 6144 + 2 6139 1766 1167 9 0 1140 1 0 572 0 7 288 2 1 166 3 0 698 0 1 299 0 4 659 0 1 1027 1 0 107 chain 6154 chr4 190214555 + 83175262 83175458 MER20 218 + 0 156 80523 16 54 22 17 44 36 65 chain 166277 chr4 190214555 + 83181444 83183371 SVA_D 2077 + 0 2073 11320 10 1 0 6 1 0 6 1 0 12 0 5 795 40 0 74 8 46 67 0 51 160 0 78 45 1 18 15 13 13 672 chain 35727 chr4 190214555 + 83194683 83195145 LTR2 463 + 0 463 37583 254 0 2 124 4 5 26 9 8 20 1 0 24 chain 37410 chr4 190214555 + 83195275 83195892 LTR9B 643 + 5 635 36469 65 0 3 8 1 6 26 0 15 76 23 22 104 5 6 77 26 27 36 3 1 34 23 13 50 6 7 54 chain 2817 chr4 190214555 + 83203182 83203220 Tigger4 2445 + 200 236 101543 20 2 0 16 chain 12232 chr4 190214555 + 83213914 83214130 MER30 238 + 0 238 66418 16 47 45 48 1 25 104 chain 3599 chr4 190214555 + 83224987 83225027 MER57F 435 + 385 425 94432 40 chain 23983 chr4 190214555 + 83234494 83234890 LTR7 482 + 0 475 50816 31 46 84 109 9 41 20 12 11 8 0 1 10 0 9 151 chain 468182 chr4 190214555 + 83241536 83246949 L1PA6 6164 + 0 6162 3901 88 0 735 1266 19 12 112 0 4 116 0 1 466 0 4 379 1 2 4 0 1 115 0 1 625 0 1 435 5 9 939 0 6 833 2 0 8 chain 119822 chr4 190214555 + 83288782 83290366 THE1B-int 1605 + 0 1596 15564 79 0 12 21 1 4 122 0 3 189 41 24 161 0 1 139 0 9 204 2 1 41 1 0 4 0 1 185 5 6 335 0 1 54 chain 4508 chr4 190214555 + 83327777 83327879 MER63A 208 + 98 202 88282 36 34 36 32 chain 32632 chr4 190214555 + 83360257 83360686 MLT2A1 477 + 1 477 39831 87 14 23 58 4 1 18 0 1 196 1 41 51 chain 541548 chr4 190214555 + 83397906 83404034 L1PA4 6152 + 1 6152 1232 1415 0 5 193 0 1 110 1 0 386 0 2 453 0 4 946 0 4 550 0 1 169 0 1 45 0 1 1854 0 5 6 chain 5710 chr4 190214555 + 83522284 83522356 MER39 703 + 175 247 82289 72 chain 41601 chr4 190214555 + 83522414 83522958 MER41A 554 + 0 554 33625 66 11 8 18 0 1 42 6 12 303 0 1 18 0 5 80 chain 31165 chr4 190214555 + 83531144 83531870 MER57A1 433 + 10 430 41010 90 1 0 23 321 0 122 0 1 4 0 14 18 0 1 147 chain 7031 chr4 190214555 + 83620329 83620446 MSTA 426 + 0 176 77495 25 3 1 66 10 71 13 chain 32249 chr4 190214555 + 83636687 83637145 LTR7B 505 + 0 498 40149 108 0 10 57 0 38 12 3 27 28 30 0 85 1 0 75 15 14 44 chain 29759 chr4 190214555 + 83669904 83670337 MLT2A1 477 + 0 477 42292 48 0 2 85 7 8 18 8 12 212 4 0 10 2 44 19 1 0 19 chain 4772 chr4 190214555 + 83729346 83729415 L1ME3A 1206 + 972 1040 86842 46 1 0 22 chain 42583 chr4 190214555 + 83729878 83730569 L1PA14 3548 + 2788 3467 33013 29 2 4 99 0 1 11 9 7 14 2 0 38 15 12 83 0 2 22 2 0 5 2 0 6 0 3 7 2 0 5 2 1 76 13 12 107 16 11 36 4 2 6 1 0 11 1 0 16 1 0 42 0 5 6 chain 3338 chr4 190214555 + 83731959 83732034 MADE1 96 + 5 96 96704 18 10 26 47 chain 49166 chr4 190214555 + 83805575 83806135 L1PA2 6032 + 5470 6030 29879 396 5 0 7 5 10 147 chain 84381 chr4 190214555 + 83823673 83824680 L1PA7 6471 + 5178 6198 20740 311 0 1 107 0 6 11 0 4 82 0 2 496 chain 18563 chr4 190214555 + 83878845 83879243 THE1B 368 + 0 368 58036 22 0 1 55 2 1 32 51 24 42 47 37 14 15 23 55 7 6 56 chain 279668 chr4 190214555 + 83990319 83994056 MER61-int 3695 + 7 3695 7430 21 14 11 7 29 0 225 2 1 67 0 1 70 29 15 329 0 1 91 12 17 269 0 5 113 0 1 72 1 0 111 2 1 106 2 0 67 2 0 11 0 5 322 0 2 183 2 1 33 7 5 215 10 0 383 1 0 94 1 0 38 1 0 253 2 0 176 4 5 13 1 0 82 5 6 163 7 8 37 0 6 8 13 7 31 chain 11141 chr4 190214555 + 83994411 83994561 MER49 923 + 126 276 68350 15 0 1 6 4 3 125 chain 28344 chr4 190214555 + 84030307 84030621 L1PA7 6471 + 6151 6465 44350 314 chain 4329 chr4 190214555 + 84038956 84039031 MER53 195 + 10 86 89295 23 11 12 41 chain 462293 chr4 190214555 + 84073472 84078520 L1PA2 6032 + 979 6032 4070 2068 3 4 1325 0 4 1652 chain 69641 chr4 190214555 + 84083590 84084358 L1PA5 6144 + 5360 6128 24088 768 chain 29689 chr4 190214555 + 84102293 84102747 MLT2A1 477 + 0 477 42380 140 0 1 28 1 5 12 23 0 16 7 8 114 1 0 16 2 3 41 10 50 43 chain 169610 chr4 190214555 + 84118455 84120450 L1PA7 6471 + 4465 6467 11121 505 9 10 567 0 1 63 3 8 848 chain 551335 chr4 190214555 + 84126785 84132814 L1PA2 6032 + 0 6032 651 74 0 1 181 1 0 579 0 1 988 0 1 213 0 1 3993 chain 510767 chr4 190214555 + 84202329 84209714 L1PA7 6471 + 0 6430 2729 65 1 2 169 12 27 149 3 4 199 20 19 64 20 18 448 0 1 48 0 4 20 6 3 229 0 1 218 0 3 5 2 1 56 2 1 878 14 0 468 0 4 508 1 0 21 0 1 104 966 0 1216 0 1 29 0 1 636 1 0 79 0 1 166 0 1 114 1 0 229 1 0 5 1 2 90 14 15 107 chain 8589 chr4 190214555 + 84233656 84233759 U6 107 + 0 103 73469 103 chain 27677 chr4 190214555 + 84237381 84237752 THE1C 375 + 0 375 45358 135 4 8 42 1 2 163 1 0 25 chain 25095 chr4 190214555 + 84262148 84262492 THE1B 368 + 0 368 49123 19 4 0 19 0 32 102 1 0 28 2 0 93 1 0 75 chain 22853 chr4 190214555 + 84265736 84266001 L1PA7 6471 + 6204 6470 52573 185 0 1 80 chain 467565 chr4 190214555 + 84285636 84291932 L1PA7 6471 + 0 6469 3921 203 4 0 6 1 5 189 0 2 26 10 11 251 0 1 772 0 6 563 1 0 120 0 2 6 2 1 182 1 0 286 4 0 6 14 17 243 1 2 51 477 8 245 3 0 198 7 0 88 1 0 784 2 1 398 1 5 145 0 649 149 1 0 79 0 2 397 5 4 34 8 11 149 12 1 171 chain 554073 chr4 190214555 + 84298780 84304810 L1PA2 6032 + 3 6029 477 254 1 0 2881 0 1 382 5 1 2507 chain 54572 chr4 190214555 + 84314621 84315229 L1PA5 6144 + 4855 5464 28019 328 0 1 280 chain 294843 chr4 190214555 + 84342998 84347363 L1PA8A 6298 + 2019 6116 6988 130 0 1 4 8 7 59 10 11 54 13 14 193 0 1 9 1 2 251 0 12 253 314 0 299 47 47 24 0 1 7 1 0 7 18 20 82 2 3 254 0 6 85 27 25 242 5 6 304 15 26 192 6 8 831 1 4 12 3 9 15 5 6 289 1 0 292 chain 8062 chr4 190214555 + 84364773 84364875 MLT1B 390 + 287 390 74716 34 0 1 68 chain 115265 chr4 190214555 + 84423489 84424799 L1PA5 6144 + 4831 6140 16349 459 0 5 839 6 0 6 chain 7447 chr4 190214555 + 84456814 84456913 L1PA8 5853 + 5715 5812 76251 25 2 1 19 1 0 52 chain 12804 chr4 190214555 + 84485023 84485167 AluSp 311 + 4 148 65435 144 chain 193634 chr4 190214555 + 84523364 84525496 L1PA4 6152 + 4013 6144 9948 622 1 0 1509 chain 74473 chr4 190214555 + 84533061 84534228 L1PA14 3548 + 2311 3456 22969 117 0 1 114 1 0 146 1 0 106 0 1 142 21 17 46 10 6 52 36 38 12 1 0 19 7 5 4 1 0 67 44 43 66 34 28 35 5 3 14 5 3 21 1 0 39 chain 31627 chr4 190214555 + 84538449 84538872 LTR7B 505 + 0 494 40641 108 0 10 57 0 38 12 0 24 29 0 2 82 1 0 26 0 1 52 14 13 26 2 0 14 chain 106268 chr4 190214555 + 84540838 84542040 L1PA5 6144 + 3580 4785 17532 100 0 3 358 0 1 586 1 0 157 chain 179844 chr4 190214555 + 84544690 84546878 L1P3 4156 + 35 2230 10594 216 1 0 69 1 0 569 12 11 310 0 4 347 0 1 207 0 4 391 1 2 64 chain 328070 chr4 190214555 + 84551008 84556189 L1PA11 4918 + 3 4475 6249 39 2 0 27 23 20 26 1 0 14 2 0 52 1 0 32 2 0 5 3 2 394 5 6 55 379 4 117 1 2 414 0 2 195 6 0 136 0 1 187 3 4 76 4 1 135 0 3 29 0 2 117 0 1 8 11 3 96 1 0 24 1 0 8 6 2 18 18 26 52 4 1 63 8 7 99 1 0 4 0 1 4 25 24 89 2 0 144 0 1 116 7 1 142 0 5 149 3 0 45 306 0 56 1 0 15 0 4 359 6 7 11 0 1 4 1 0 224 2 3 5 1 0 409 8 4 58 2 1 13 2 0 68 chain 3839 chr4 190214555 + 84558544 84558595 L1PA7 6471 + 6419 6467 92569 40 3 0 8 chain 130370 chr4 190214555 + 84664535 84666115 LTR12C 1709 + 0 1709 13992 262 0 26 11 1 2 265 21 13 116 0 95 14 0 15 17 2 1 275 1 0 5 3 1 29 0 1 76 0 4 399 1 0 82 chain 24688 chr4 190214555 + 84714664 84714978 AluY 311 + 0 304 49754 11 4 0 121 0 1 164 7 0 7 chain 24160 chr4 190214555 + 84747563 84747881 THE1C 375 + 9 326 50561 176 11 10 131 chain 26213 chr4 190214555 + 84763193 84763546 L1PA8 5853 + 5507 5853 47396 55 1 0 47 2 0 73 10 8 50 2 1 19 1 0 93 chain 8730 chr4 190214555 + 84770373 84770508 Tigger1 2417 + 2281 2416 73144 34 0 1 44 16 15 41 chain 19715 chr4 190214555 + 84826115 84826445 MER2 342 + 13 341 56765 43 28 24 63 9 13 49 4 0 10 12 14 112 chain 10983 chr4 190214555 + 84904941 84905070 LTR13 1007 + 878 1007 68575 129 chain 12259 chr4 190214555 + 84906702 84906891 MER30 238 + 36 238 66353 20 6 11 39 4 15 78 3 0 39 chain 36049 chr4 190214555 + 84949945 84950410 L1PA8 5853 + 5391 5849 37385 173 2 1 45 2 0 67 13 11 56 2 1 15 1 0 89 chain 464942 chr4 190214555 + 84987206 84992607 L1PA4 6152 + 0 5356 3994 142 8 22 471 36 1 470 1 0 604 0 1 231 1 0 377 0 1 929 0 4 70 33 0 186 0 1 1390 0 1 373 1 0 30 0 4 48 chain 6333 chr4 190214555 + 84994731 84994851 MER30 238 + 60 198 79887 38 4 1 7 3 0 8 11 35 49 chain 19242 chr4 190214555 + 85030318 85030634 LTR19A 502 + 112 502 57307 16 6 9 42 0 74 176 41 38 35 chain 86596 chr4 190214555 + 85033461 85034614 MER11B 1079 + 6 1079 20301 214 0 5 182 6 5 260 0 4 94 92 4 276 1 0 14 1 2 13 chain 7233 chr4 190214555 + 85034222 85034308 MER11B 1079 + 685 770 76854 81 1 0 4 chain 503325 chr4 190214555 + 85043345 85049688 L1PA7 6471 + 0 6467 3020 196 3 2 583 2 1 38 0 1 4 2 1 674 5 6 196 1 2 55 0 1 400 0 5 476 5 4 130 0 103 606 0 2 7 2 0 4 1 0 115 1 0 527 0 1 95 0 1 21 1 2 403 14 10 56 4 0 71 0 1 147 0 1 7 7 6 276 0 1 36 0 8 332 0 3 27 9 10 46 0 2 103 0 3 435 0 2 27 14 15 25 12 13 142 chain 27289 chr4 190214555 + 85087989 85088364 THE1C 375 + 0 373 45842 182 27 26 142 1 0 23 chain 26986 chr4 190214555 + 85089900 85090275 THE1C 375 + 2 375 46288 170 26 25 153 1 0 25 chain 5934 chr4 190214555 + 85110892 85110962 L1M1 2793 + 1056 1126 81342 70 chain 27344 chr4 190214555 + 85111428 85111868 L1M1 2793 + 781 1213 45772 21 2 1 28 2 0 8 1 0 56 3 1 6 1 0 71 4 2 5 0 2 21 1 0 142 9 10 25 14 13 20 chain 64733 chr4 190214555 + 85139032 85139771 L1PA5 6144 + 5131 5873 25251 728 0 3 11 chain 107550 chr4 190214555 + 85193299 85194492 L1PA4 6152 + 4686 5879 17381 1193 chain 113642 chr4 190214555 + 85203417 85204941 L1PA10 4194 + 1295 2849 16599 174 1 2 4 1 0 13 9 30 58 0 2 473 6 13 153 1 0 8 0 2 46 4 0 333 9 10 13 0 1 24 0 3 5 3 0 101 0 1 85 chain 38290 chr4 190214555 + 85207217 85207891 L1PB1 5432 + 4819 5420 35847 294 46 4 15 0 1 13 1 0 10 6 2 12 4 1 48 1 0 12 6 5 45 1 0 15 3 0 6 16 6 19 2 0 5 1 0 4 12 10 24 1 0 21 1 0 13 1 0 16 chain 30981 chr4 190214555 + 85210507 85210993 LTR3B_ 500 + 0 478 41145 78 2 1 78 0 2 143 4 0 31 19 18 28 47 43 56 chain 76533 chr4 190214555 + 85216145 85217227 MER11A 1151 + 0 1135 22430 79 11 19 130 1 0 61 14 11 26 0 2 60 0 1 51 5 6 32 6 7 48 3 5 22 1 0 98 4 0 24 6 8 53 0 4 58 1 0 13 7 41 49 0 9 168 7 6 44 chain 71816 chr4 190214555 + 85239128 85240027 L1P3 4156 + 3240 4139 23589 260 1 0 11 7 5 30 6 10 265 4 5 231 0 1 49 2 0 7 2 1 24 chain 24964 chr4 190214555 + 85283528 85283812 L1PA7 6471 + 5794 6078 49342 284 chain 31603 chr4 190214555 + 85283812 85284204 L1PA7 6471 + 6080 6470 40662 239 1 2 130 0 1 7 2 0 5 2 0 6 chain 41582 chr4 190214555 + 85294722 85295190 L1PA7 6471 + 5991 6459 33636 468 chain 3234 chr4 190214555 + 85322486 85322521 tRNA-Glu-GAG 37 + 0 35 97639 35 chain 235791 chr4 190214555 + 85324652 85327363 L1PA4 6152 + 2519 5227 8578 302 11 2 4 0 1 598 0 1 1163 12 16 621 chain 70082 chr4 190214555 + 85380023 85380831 L1PA5 6144 + 4263 5069 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chain 41744 chr4 190214555 + 87281562 87282137 MER41E 591 + 0 582 33522 28 0 3 89 0 1 4 2 1 263 16 14 17 5 4 40 0 7 111 chain 26166 chr4 190214555 + 87285270 87285622 THE1B 368 + 3 368 47479 41 0 15 107 7 6 20 2 0 119 0 1 56 chain 4663 chr4 190214555 + 87293504 87293562 Tigger3 1187 + 753 810 87466 45 1 0 12 chain 44857 chr4 190214555 + 87310806 87311437 MER41B 635 + 0 633 31661 93 1 0 32 1 2 332 33 34 10 10 11 119 chain 12224 chr4 190214555 + 87312264 87312410 LTR64 526 + 0 146 66429 146 chain 30158 chr4 190214555 + 87315021 87315412 MER51B 395 + 0 378 41882 39 13 0 188 2 3 15 1 0 133 chain 6920 chr4 190214555 + 87329194 87329377 MLT2C1 407 + 30 215 77884 61 32 34 19 48 48 23 chain 42342 chr4 190214555 + 87361015 87361880 MER41A 554 + 0 554 33163 134 9 5 46 9 5 267 303 0 97 chain 15599 chr4 190214555 + 87368343 87368531 MER41-int 2638 + 2447 2636 61537 108 0 1 80 chain 44972 chr4 190214555 + 87368540 87369090 MER41A 554 + 0 547 31597 4 1 0 153 3 0 104 0 1 285 chain 72850 chr4 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87979097 87979152 MER3 215 + 77 131 90547 28 1 0 26 chain 22452 chr4 190214555 + 87993106 87993786 THE1C 375 + 8 375 53196 53 0 1 81 326 11 18 57 59 119 1 0 25 chain 5370 chr4 190214555 + 88006369 88006440 MLT1B 390 + 315 390 83848 19 0 4 52 chain 114605 chr4 190214555 + 88026041 88027657 THE1D-int 1627 + 0 1627 16459 12 0 2 20 5 3 228 6 7 211 6 3 149 43 42 23 4 7 12 11 5 86 3 4 162 9 10 274 0 18 7 8 0 12 0 3 170 4 6 151 chain 3624 chr4 190214555 + 88110776 88110820 MER58B 340 + 281 325 94244 44 chain 111735 chr4 190214555 + 88119343 88120883 THE1B-int 1605 + 0 1600 16844 34 0 1 395 38 21 257 41 50 14 0 1 4 1 0 4 7 44 30 6 40 691 4 0 14 chain 507943 chr4 190214555 + 88122037 88128909 L1PA7 6471 + 171 6449 2851 326 5 0 152 0 8 427 1 0 14 6 5 13 11 0 247 0 17 330 9 7 256 0 3 594 0 1 68 0 2 194 1 0 28 1 0 33 8 15 249 636 12 251 1 0 68 1 0 9 1 0 17 0 1 56 0 5 139 1 3 511 1 2 457 0 4 95 1 5 160 2 0 30 2 1 307 2 13 191 18 1 57 0 4 51 4 7 453 0 1 333 0 1 44 chain 29473 chr4 190214555 + 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88318409 88318986 MER4B 649 + 0 633 33969 25 6 5 59 4 2 16 16 17 33 0 42 112 0 1 32 0 15 274 chain 10942 chr4 190214555 + 88333126 88333331 L1PB1 5432 + 5239 5422 68628 41 1 0 16 25 12 18 3 1 5 1 0 14 2 0 24 1 0 23 1 0 11 1 0 18 chain 3364 chr4 190214555 + 88339180 88339280 MER58B 340 + 60 162 96441 16 1 0 15 42 45 26 chain 33079 chr4 190214555 + 88359551 88359959 MER48 407 + 0 407 39455 180 1 0 227 chain 31939 chr4 190214555 + 88360534 88360891 L1PA4 6152 + 5782 6139 40385 357 chain 24784 chr4 190214555 + 88516218 88516512 AluY 311 + 17 311 49611 101 1 0 14 0 1 178 chain 509473 chr4 190214555 + 88538950 88545052 L1PA6 6164 + 0 6156 2796 408 0 2 9 13 11 137 1 0 52 6 15 288 1 0 362 5 0 61 8 7 100 0 1 315 0 1 89 0 4 78 6 5 243 0 2 486 10 6 507 0 1 12 0 4 18 1 0 4 0 1 19 2 3 261 1 6 844 0 4 393 1 16 613 3 5 438 0 1 73 0 17 234 chain 190175 chr4 190214555 + 88550216 88552283 L1PA3long 6157 + 4077 6146 10104 1030 0 2 1037 chain 15938 chr4 190214555 + 88557670 88558287 L1PB2 3958 + 3569 3838 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459856 chr4 190214555 + 89390153 89395338 L1PA5 6144 + 938 6127 4128 1407 0 1 824 2 0 715 11 10 705 0 2 689 0 3 818 1 2 13 chain 164943 chr4 190214555 + 89478191 89480320 L1PA10 4194 + 1150 3297 11415 306 3 2 158 1 0 48 0 7 57 0 8 195 8 5 67 9 13 25 0 2 74 0 1 104 0 4 384 1 2 5 1 0 6 0 1 17 1 0 136 0 1 482 4 0 37 chain 115138 chr4 190214555 + 89489874 89491365 LTR12C 1709 + 0 1709 16368 256 24 33 13 9 0 36 0 43 103 0 11 76 9 7 64 2 0 77 0 118 234 0 47 99 7 11 394 4 3 84 chain 22610 chr4 190214555 + 89508881 89509248 THE1B 368 + 0 368 52972 111 32 34 27 1 2 17 14 4 111 5 13 49 chain 162417 chr4 190214555 + 89525553 89528248 L1PA8 5853 + 3802 5852 11583 790 0 1 42 1 0 372 0 2 268 1 2 242 1 0 11 709 68 10 2 0 69 1 0 9 10 9 46 1 0 17 1 0 92 chain 35628 chr4 190214555 + 89581700 89582172 MLT2A2 560 + 0 502 37646 165 19 34 4 0 1 198 0 11 72 0 3 14 chain 10864 chr4 190214555 + 89582484 89582658 MLT1-int 490 + 202 379 68755 72 3 0 5 1 0 9 12 19 72 chain 27952 chr4 190214555 + 89613536 89614073 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23 97 1 2 25 42 39 29 0 1 51 chain 18791 chr4 190214555 + 89715224 89715451 L1PA6 6164 + 5933 6161 57796 82 1 2 144 chain 4222 chr4 190214555 + 89855761 89855814 MER47B 469 - 105 159 89996 26 0 1 27 chain 77400 chr4 190214555 + 89856140 89857101 L1P1 4361 + 4 968 22197 840 0 3 121 chain 122182 chr4 190214555 + 89857101 89858503 L1PA5 6144 + 4733 6138 15164 85 0 2 644 0 1 673 chain 18321 chr4 190214555 + 89902139 89902338 L1PA2 6032 + 5832 6031 58334 199 chain 26284 chr4 190214555 + 90005322 90005596 AluYa5 310 + 36 310 47299 274 chain 146830 chr4 190214555 + 90011685 90014098 L1PB1 5432 + 3304 5386 12553 427 10 4 7 0 12 207 5 6 19 1 0 152 10 9 325 2 0 14 6 4 138 3 0 263 0 2 25 305 0 185 1 0 11 1 0 24 1 0 4 3 2 12 28 22 42 2 1 15 1 0 16 1 4 25 1 0 15 1 0 6 3 0 9 6 0 15 3 1 5 1 0 14 2 0 24 1 0 16 chain 4106 chr4 190214555 + 90031797 90031967 MLT1A0 366 + 81 258 90745 30 110 117 30 chain 123576 chr4 190214555 + 90034369 90035884 L1PA7 6471 + 4948 6468 14918 599 0 1 76 4 8 166 3 4 153 1 3 354 3 4 145 4 0 7 chain 16398 chr4 190214555 + 90068832 90069049 THE1B 368 + 154 368 60523 15 1 0 31 2 0 168 chain 538981 chr4 190214555 + 90227610 90233632 L1PA3long 6157 + 0 6156 1400 152 0 1 614 9 137 49 0 2 673 0 1 2179 0 1 1883 0 1 312 7 0 7 0 7 137 chain 68595 chr4 190214555 + 90303261 90304011 L1PA3long 6157 + 4606 5356 24311 750 chain 72253 chr4 190214555 + 90304011 90304808 L1PA3long 6157 + 5360 6157 23474 797 chain 5363 chr4 190214555 + 90347477 90347589 MER44B 551 + 68 204 83894 39 0 2 10 31 53 32 chain 5612 chr4 190214555 + 90391314 90391416 L1MA3 4352 + 4217 4311 82748 18 4 0 25 2 0 22 1 0 6 6 5 18 chain 415452 chr4 190214555 + 90407649 90412476 L1PA4 6152 + 1 6152 4949 512 0 1 516 1 0 9 5 6 15 0 1 172 0 2 1640 0 1 32 0 1 163 0 5 342 8 9 349 1 2 175 0 2 376 0 1311 5 1 0 244 1 0 260 chain 56272 chr4 190214555 + 90412538 90413346 L1PB 1623 + 671 1436 27495 425 46 1 70 0 6 129 3 0 3 2 0 61 0 1 69 chain 25837 chr4 190214555 + 90416864 90417214 L1PA8 5853 + 5511 5853 47959 50 2 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chr4 190214555 + 90864293 90864653 MSTD 398 + 0 386 65440 44 5 7 76 128 154 29 33 31 45 chain 465762 chr4 190214555 + 90911503 90917042 L1PA4 6152 + 10 5518 3969 719 14 4 169 0 1 785 0 3 26 6 0 603 2 0 366 22 22 398 0 1 94 23 2 621 0 1 369 5 6 532 0 1 392 0 1 258 1 0 134 chain 67665 chr4 190214555 + 91023056 91023807 L1PA4 6152 + 4389 5139 24529 611 1 0 139 chain 15889 chr4 190214555 + 91042082 91042459 THE1D 372 + 0 372 61169 15 0 2 15 1 0 24 84 76 41 25 27 25 20 25 32 5 0 90 chain 480646 chr4 190214555 + 91077543 91083549 L1PA6 6164 + 52 6146 3617 60 14 13 14 3 0 8 0 15 37 5 6 57 2 1 5 0 1 46 36 36 103 0 4 7 1 0 35 11 10 229 0 1 7 1 0 44 1 18 124 0 25 114 6 7 152 0 1 214 0 2 4 0 1 292 1 5 302 13 17 144 1 3 105 4 5 78 7 9 90 0 1 4 1 0 55 1 0 4 0 1 527 0 1 93 0 1 275 0 10 89 1 0 375 5 1 703 1 0 223 0 5 1139 5 8 128 chain 74884 chr4 190214555 + 91103522 91104530 MER11A 1151 + 0 1147 22870 72 0 99 59 0 4 58 10 6 28 0 2 115 0 1 94 0 1 143 5 8 116 0 27 23 22 27 37 0 1 226 chain 104052 chr4 190214555 + 91137746 91138865 L1PA2 6032 + 4178 5297 17814 1119 chain 107254 chr4 190214555 + 91167876 91169214 SVA_A 1864 + 465 1864 17409 32 3 0 41 0 76 119 3 0 26 0 2 79 2 0 47 1 0 26 2 0 214 4 37 81 2 0 56 39 0 270 0 2 291 chain 2678 chr4 190214555 + 91168614 91168653 SVA_A 1864 + 1117 1190 28114 10 12 46 17 chain 15692 chr4 190214555 + 91196000 91196197 AluYk4 311 + 94 300 61410 37 0 1 141 0 8 19 chain 66461 chr4 190214555 + 91255588 91256671 MER11B 1079 + 0 1079 24837 204 0 1 202 1 0 4 0 1 18 7 10 17 18 17 22 35 23 4 0 1 14 15 8 48 0 1 109 0 7 7 1 0 16 68 62 24 5 6 53 0 1 76 3 11 66 0 1 13 4 3 29 chain 12745 chr4 190214555 + 91315880 91316176 THE1B 368 + 0 299 65535 58 24 24 21 12 11 55 29 31 14 33 35 50 chain 81120 chr4 190214555 + 91416125 91417262 L1PA11 4918 + 3444 4567 21408 216 4 0 142 6 8 519 6 0 64 2 1 13 2 0 8 1 0 55 21 18 20 4 0 9 20 26 11 1 0 13 chain 519861 chr4 190214555 + 91437497 91443656 L1HS 6032 + 8 6021 2282 141 6 5 98 5 4 521 129 1 325 0 2 867 0 18 201 1 0 637 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91643877 91643927 MADE1 96 + 45 95 91447 50 chain 22613 chr4 190214555 + 91694462 91694785 THE1C-int 1605 + 37 419 52967 4 1 0 7 0 1 21 0 1 25 0 57 17 3 0 40 0 3 126 11 12 68 chain 68412 chr4 190214555 + 91706620 91707382 L1PA4 6152 + 5381 6143 24355 762 chain 15422 chr4 190214555 + 91764501 91764697 THE1B-int 1605 + 2 202 61754 111 0 3 21 0 1 64 chain 38680 chr4 190214555 + 91798505 91799116 LTR12_ 688 + 0 688 35579 25 9 8 61 0 2 19 0 49 83 12 27 145 33 43 22 50 52 152 chain 48192 chr4 190214555 + 91822487 91823059 LTR22 571 + 0 571 30220 254 1 0 317 chain 4208 chr4 190214555 + 91835227 91835273 L1PA16 3655 + 3530 3576 90075 46 chain 29774 chr4 190214555 + 91841094 91841549 L1PA13 3608 + 3048 3488 42274 81 6 4 27 1 0 113 2 0 59 8 7 19 1 0 28 1 0 10 2 0 48 8 4 20 1 0 20 chain 262386 chr4 190214555 + 91889259 91894541 HERVL-int 5654 + 0 5646 7898 411 1009 2150 581 3 4 403 0 1 4 1 11 18 0 1 53 413 0 730 5 9 75 23 24 25 1 2 290 0 1 109 0 1 80 429 72 169 37 7 52 0 1 36 0 1 325 chain 565758 chr4 190214555 + 91978211 91984243 L1HS 6032 + 0 6032 76 6032 chain 32526 chr4 190214555 + 92008890 92009663 MLT2A1 477 + 0 477 39928 140 0 1 20 9 13 209 2 0 14 330 31 49 chain 37525 chr4 190214555 + 92025771 92026227 LTR7Y 441 + 0 426 36387 169 31 0 154 0 1 102 chain 113924 chr4 190214555 + 92026242 92028207 HERVH-int 3825 + 0 2121 16556 532 191 0 38 11 159 50 2 1 290 13 14 145 16 1 201 315 529 161 chain 5405 chr4 190214555 + 92026774 92026835 HERVH-int 3825 + 471 532 80030 61 chain 4266 chr4 190214555 + 92026847 92026895 HERVH-int 3825 + 483 531 89731 48 chain 38452 chr4 190214555 + 92030692 92031151 LTR7Y 441 + 0 430 35754 37 0 2 130 31 0 261 chain 66509 chr4 190214555 + 92056274 92057456 L1MA1 4479 + 3065 4190 24815 18 0 1 7 2 1 49 4 3 12 2 0 19 4 0 76 1 0 14 3 0 46 5 0 53 28 23 126 1 0 39 27 28 4 0 1 130 1 0 24 2 0 16 1 0 71 1 0 13 8 6 12 40 39 52 3 0 7 1 0 123 1 0 29 2 0 35 1 0 6 46 25 17 chain 30100 chr4 190214555 + 92061648 92062090 MLT2A2 560 + 0 560 41948 143 6 10 26 1 0 115 6 0 4 0 115 87 1 0 5 0 1 20 9 11 13 0 4 6 chain 5180 chr4 190214555 + 92066758 92066818 THE1D-int 1627 + 254 314 84772 60 chain 514214 chr4 190214555 + 92078690 92085121 L1PA7 6471 + 0 6467 2558 63 2 3 24 0 3 1361 7 8 100 0 1 330 1 4 59 0 1 63 7 22 345 3 17 226 1 2 120 10 1 117 0 1 18 0 4 97 0 1 92 13 17 419 11 4 54 0 1 34 2 0 57 5 0 337 1 2 148 9 15 84 5 6 245 0 1 850 0 1 262 2 1 18 0 1 4 1 0 564 0 1 250 2 0 8 chain 62443 chr4 190214555 + 92098481 92099179 L1PA4 6152 + 5447 6152 25765 283 0 1 307 0 1 102 0 5 6 chain 41744 chr4 190214555 + 92115386 92115946 THE1D-int 1627 + 0 543 33523 435 17 1 58 3 2 47 chain 66164 chr4 190214555 + 92132665 92133399 L1PA3long 6157 + 5421 6157 24918 406 0 3 310 1 0 17 chain 26087 chr4 190214555 + 92181253 92181718 L1MA2 4263 + 3613 4105 47596 22 0 3 24 1 0 125 0 3 16 3 0 57 84 117 77 8 1 16 1 0 31 chain 317783 chr4 190214555 + 92211446 92215213 L1PA6 6164 + 2347 6161 6450 81 0 1 755 5 6 115 0 1 397 1 0 58 15 53 556 0 4 1118 0 4 501 2 1 163 chain 74567 chr4 190214555 + 92217750 92218615 MER11D 897 + 0 887 22941 287 2 1 305 1 24 270 chain 14605 chr4 190214555 + 92313129 92313464 L1PB1 5432 + 5114 5424 62794 24 30 24 5 2 0 52 1 0 18 1 0 44 1 0 15 18 14 16 3 0 20 2 0 16 18 17 6 1 0 6 1 0 13 1 0 16 1 0 4 chain 4509 chr4 190214555 + 92322447 92322528 L1MA3 4352 + 4237 4314 88269 21 2 0 24 1 0 6 6 5 21 chain 12523 chr4 190214555 + 92474968 92475114 L1PA3long 6157 + 5997 6142 65943 9 1 0 136 chain 119943 chr4 190214555 + 92571259 92572599 L1P1 4361 + 2357 3696 15549 861 0 1 229 2 0 248 chain 149189 chr4 190214555 + 92601172 92603266 L1PA10 4194 + 2070 4150 12407 41 1 0 4 1 2 18 7 10 450 5 8 25 0 6 11 24 31 22 0 3 6 0 2 29 0 1 385 2 5 12 44 0 662 10 14 264 0 1 34 6 3 31 chain 56732 chr4 190214555 + 92829299 92830052 L1PA8 5853 + 5056 5809 27347 253 0 2 63 0 3 187 1 0 44 2 0 70 2 1 15 0 1 45 22 20 49 chain 165533 chr4 190214555 + 92889252 92891273 L1PA7 6471 + 4444 6467 11375 120 5 1 195 12 15 33 0 2 273 0 1 536 0 4 79 2 0 45 0 1 549 1 0 14 6 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0 52 chain 3825 chr4 190214555 + 93808356 93808419 MIRc 230 + 144 210 92671 32 8 11 23 chain 63094 chr4 190214555 + 93863332 93864218 L1PB2 3958 + 2940 3838 25603 27 0 1 172 9 11 158 2 0 54 1 0 14 6 1 56 8 10 7 4 0 83 0 23 33 0 1 27 1 0 61 1 0 74 2 0 22 1 0 63 chain 30169 chr4 190214555 + 93864579 93865175 L1MA5A 2387 + 1843 2381 41874 141 1 0 49 1 0 36 1 0 18 21 20 50 2 0 30 1 0 22 56 25 62 1 0 7 53 37 19 2 0 16 1 0 6 chain 61121 chr4 190214555 + 93923885 93924623 L1PA7 6471 + 5251 5992 26081 214 0 1 24 0 1 130 1 0 79 0 2 290 chain 89017 chr4 190214555 + 93925722 93927086 L1M1 2793 + 665 2000 19853 30 47 34 11 2 0 5 2 0 21 11 6 15 18 17 27 2 0 8 1 0 52 25 27 12 0 2 71 1 0 179 0 1 68 7 3 15 4 0 4 4 0 223 1 0 174 2 3 209 0 4 27 0 1 86 chain 275650 chr4 190214555 + 93933222 93937578 L1MA2 4263 + 44 4114 7562 47 280 40 28 23 7 65 36 34 50 18 17 7 1 0 6 1 2 285 0 1 5 1 0 46 1 0 20 0 1 689 0 3 89 2 3 31 22 19 160 14 19 139 0 1 98 6 7 10 7 8 184 0 1 52 5 6 307 0 1 100 15 14 51 5 0 88 8 7 25 23 23 117 2 0 82 22 24 78 6 7 121 10 11 154 4 7 17 5 4 105 3 0 17 9 4 208 21 18 115 16 1 26 11 9 93 7 0 17 1 0 39 chain 122675 chr4 190214555 + 93977027 93978600 THE1B-int 1605 + 0 1600 15085 80 1 0 239 0 1 110 0 25 187 0 1 105 0 9 7 18 9 49 0 1 290 7 6 365 4 5 111 chain 134234 chr4 190214555 + 94003168 94004646 L1PA4 6152 + 4489 5968 13623 1101 0 1 377 chain 125993 chr4 190214555 + 94025393 94026788 L1PA3long 6157 + 4750 6149 14560 554 0 4 841 chain 67467 chr4 190214555 + 94029619 94030399 L1PA3long 6157 + 3924 4708 24587 343 0 3 78 6 10 117 4 0 164 1 2 67 chain 193904 chr4 190214555 + 94044502 94047295 L1P2 5180 + 2 2534 9935 143 7 6 40 11 41 15 18 16 198 1 0 17 10 2 35 1 0 161 9 8 18 0 1 84 0 15 189 0 3 74 6 7 335 307 0 11 0 5 155 0 3 166 5 7 429 0 1 132 5 0 68 0 2 122 0 2 21 chain 68597 chr4 190214555 + 94047295 94048097 L1PA6 6164 + 5352 6156 24289 492 0 1 130 1 2 179 chain 554427 chr4 190214555 + 94098907 94105047 L1PA3long 6157 + 1 6157 451 1045 1 0 229 1 0 440 0 1 536 0 2 1044 1 0 198 0 5 445 0 1 410 0 4 171 0 1 777 0 4 182 0 1 660 chain 8501 chr4 190214555 + 94130424 94130548 MER39 703 + 258 367 73678 38 15 0 71 chain 10428 chr4 190214555 + 94132769 94132913 MSTA 426 + 246 389 69558 45 1 0 4 0 1 16 6 5 72 chain 73340 chr4 190214555 + 94151238 94152116 L1PA8 5853 + 3337 4215 23252 53 1 0 494 0 1 196 0 1 4 10 9 120 chain 106020 chr4 190214555 + 94157302 94158517 SVA_F 1814 + 0 1465 17562 827 40 0 28 0 290 320 chain 92820 chr4 190214555 + 94169658 94171011 LTR12C 1709 + 0 1709 19212 168 4 0 228 5 6 62 1 0 98 19 20 70 0 119 33 12 18 15 1 0 29 0 119 87 0 47 88 24 0 8 20 13 212 0 101 77 32 31 60 chain 3251 chr4 190214555 + 94186686 94186722 MLT1F 544 + 0 36 97469 36 chain 24707 chr4 190214555 + 94347921 94348205 L1PA6 6164 + 5877 6161 49717 284 chain 15680 chr4 190214555 + 94381580 94381773 Tigger1 2417 + 1720 1917 61422 94 6 10 93 chain 12267 chr4 190214555 + 94394525 94394771 L1PB1 5432 + 5180 5404 66339 39 20 18 44 1 0 15 3 0 8 14 5 18 9 6 13 2 0 24 1 0 21 1 0 13 chain 11976 chr4 190214555 + 94426080 94426242 L1PA17 2846 + 2533 2693 66876 99 1 0 17 1 0 44 chain 47711 chr4 190214555 + 94436613 94437320 L1PB2 3958 + 3149 3838 30392 38 0 1 116 24 22 37 17 11 65 2 0 12 4 0 94 1 0 72 5 4 58 1 0 39 1 2 33 2 0 22 1 0 63 chain 6744 chr4 190214555 + 94501433 94501561 MER5C 305 + 0 154 78497 16 30 54 54 0 2 28 chain 11783 chr4 190214555 + 94554880 94555057 MER47A 366 + 105 291 67245 114 14 28 12 5 0 32 chain 58839 chr4 190214555 + 94692252 94693006 LTR17 781 + 0 781 26724 86 1 2 123 0 1 115 1 0 79 0 1 74 7 8 97 9 11 119 0 22 43 chain 62615 chr4 190214555 + 94718983 94719859 L1MA4 2864 + 1245 2183 25728 463 21 13 145 1 0 5 0 1 44 1 0 4 0 34 58 3 0 68 16 56 47 chain 19193 chr4 190214555 + 94721743 94721991 AluSc 308 + 0 246 57356 12 4 0 140 0 2 92 chain 13830 chr4 190214555 + 94789863 94790062 Tigger2a 444 + 50 249 63829 11 1 4 24 12 12 5 3 0 143 chain 21686 chr4 190214555 + 94845991 94846276 L1MA3 4352 + 2756 3040 54244 126 11 10 148 chain 31890 chr4 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95480626 95483004 L1PA3long 6157 + 3762 6142 9099 984 0 1 435 0 1 959 chain 548604 chr4 190214555 + 95663708 95669862 L1PA3long 6157 + 6 6155 828 672 5 0 36 11 4 133 0 1 951 0 2 339 2 0 705 1 2 1045 0 2 48 0 1 1793 0 1 162 0 1 251 chain 21670 chr4 190214555 + 95743177 95743564 THE1B 368 + 0 356 54265 40 72 44 88 11 10 18 5 3 153 chain 113850 chr4 190214555 + 95743576 95745131 THE1B-int 1605 + 0 1588 16572 67 10 6 149 4 5 113 6 3 48 2 0 37 3 28 225 8 9 68 37 38 110 0 3 384 1 7 143 0 5 140 chain 103951 chr4 190214555 + 95752928 95754082 L1P1 4361 + 2698 3852 17826 1154 chain 428685 chr4 190214555 + 95791404 95796403 L1PA5 6144 + 3 5023 4769 132 2 16 280 1 0 4 10 11 198 4 6 123 0 1 261 1 3 185 0 1 216 0 3 266 1 0 1277 0 1 252 8 4 877 1 2 127 0 1 773 chain 20527 chr4 190214555 + 95811541 95811805 MER4E1 777 + 487 751 55749 50 2 0 106 0 1 6 0 1 100 chain 152701 chr4 190214555 + 95827578 95829380 L1PA6 6164 + 4342 6162 12189 267 2 0 19 0 4 26 0 1 631 0 5 19 1 5 51 0 3 215 0 2 311 0 1 260 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71 0 1 173 3 1 19 1 0 36 1 0 14 10 20 38 8 6 10 4 0 94 1 0 69 1 0 53 24 23 40 0 1 12 12 10 22 1 0 61 chain 36603 chr4 190214555 + 100112264 100112725 LTR2 463 + 0 463 37015 56 0 1 305 12 13 88 chain 4063 chr4 190214555 + 100129950 100130025 MADE1 96 - 0 91 90999 32 10 26 33 chain 34697 chr4 190214555 + 100134650 100135039 L1PA6 6164 + 5215 5607 38224 103 0 4 82 1 0 203 chain 21287 chr4 190214555 + 100260876 100261135 L1PA7 6471 + 6205 6464 54786 259 chain 4179 chr4 190214555 + 100310974 100311024 MER45A 178 + 75 125 90268 50 chain 224028 chr4 190214555 + 100333552 100337280 L1PA14 3548 + 93 3458 8930 54 329 3 57 1 0 5 0 1 4 27 25 21 7 5 29 4 2 57 8 0 137 2 0 71 0 1 182 0 2 225 16 12 85 37 16 14 0 21 190 0 2 58 0 1 33 11 12 16 19 18 45 1 0 232 41 40 137 5 3 4 0 1 57 13 12 59 6 7 318 16 17 116 0 2 33 11 10 139 0 5 7 5 0 236 25 21 32 17 15 5 2 0 107 24 17 8 1 0 84 1 0 44 5 6 33 0 2 26 16 11 36 4 2 10 0 1 4 1 0 21 1 0 41 chain 148139 chr4 190214555 + 100379137 100381206 L1PBa1 4058 + 10 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116247 chr4 190214555 + 101675126 101676660 MER57-int 2662 + 99 1624 16177 9 1 0 76 0 5 118 5 4 145 3 1 171 0 1 39 5 0 148 2 0 218 0 3 24 0 1 34 11 3 138 0 1 4 7 6 96 1 0 54 0 1 225 chain 32337 chr4 190214555 + 101776695 101777196 MLT2A2 560 + 0 560 40085 53 10 0 9 1 0 18 5 0 100 1 0 11 12 23 16 14 15 63 0 32 41 1 3 15 3 14 90 0 19 38 chain 29222 chr4 190214555 + 101803715 101804025 AluYa5 310 + 0 309 43011 132 1 0 177 chain 40367 chr4 190214555 + 101808558 101809131 L1PB2 3958 + 3269 3835 34404 38 2 0 51 0 3 16 3 1 60 2 0 13 3 0 94 3 4 17 7 10 41 1 0 62 1 0 76 2 0 19 2 1 60 chain 12893 chr4 190214555 + 101817768 101817949 MER30 238 + 38 238 65267 74 4 17 21 4 10 78 chain 38032 chr4 190214555 + 101840368 101840853 MER9a3 513 + 0 513 36052 93 17 18 77 0 28 42 1 0 255 chain 51114 chr4 190214555 + 101866628 101867173 L1HS 6032 + 5482 6027 29191 545 chain 25980 chr4 190214555 + 101889359 101889631 AluYb8 318 + 43 315 47749 272 chain 210652 chr4 190214555 + 101907187 101909542 L1PA5 6144 + 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6031 6019 1458 0 1 2233 chain 31215 chr4 190214555 + 111489644 111489977 L1HS 6032 + 5699 6032 40960 333 chain 53328 chr4 190214555 + 111490002 111490750 L1PA8A 6298 + 5539 6289 28461 29 0 2 29 4 5 29 21 6 28 0 1 15 0 11 116 9 6 332 0 4 29 14 15 93 chain 11934 chr4 190214555 + 111538371 111538525 L1PA5 6144 + 5997 6144 66941 10 8 1 136 chain 2802 chr4 190214555 + 111541968 111541998 MER121 330 + 140 170 101640 30 chain 109133 chr4 190214555 + 111559821 111561176 L1PA7 6471 + 5122 6469 17162 5 0 3 204 1 0 287 1 0 88 7 8 148 1 0 38 4 0 227 1 0 329 2 0 5 2 0 5 chain 534432 chr4 190214555 + 111565145 111571245 L1PA5 6144 + 0 6142 1642 2395 4 11 104 0 1 1228 0 37 151 0 3 419 0 4 33 15 0 911 0 4 11 5 6 824 chain 14922 chr4 190214555 + 111613679 111613869 L1PA6 6164 + 5968 6159 62365 35 3 4 152 chain 563942 chr4 190214555 + 111894801 111900831 L1HS 6032 + 2 6032 115 147 1 3 5 2 0 5875 chain 4302 chr4 190214555 + 111946849 111946902 MLT2D 439 + 381 439 89487 10 0 5 43 chain 182801 chr4 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0 15 301 169 126 8 9 277 3 0 181 2 3 51 chain 273127 chr4 190214555 + 112161084 112164612 L1PA5 6144 + 2903 6144 7629 261 0 1 85 1 0 4 0 1 41 0 1 187 0 1 936 0 1 236 1 0 126 0 2 508 1 0 380 6 53 78 335 0 188 4 5 137 4 0 9 chain 19550 chr4 190214555 + 112164624 112165551 L1MA2 4263 + 3429 4053 14191 33 0 4 47 0 3 57 2 1 9 11 7 35 299 0 37 1 0 130 15 14 29 2 0 121 14 12 85 chain 2771 chr4 190214555 + 112178956 112178997 L1PA5 6144 + 5466 5510 101836 13 0 3 28 chain 16020 chr4 190214555 + 112179084 112179262 L1PA5 6144 - 956 1135 61003 9 0 1 169 chain 39982 chr4 190214555 + 112179265 112179711 L1PA5 6144 + 5691 6137 34670 446 chain 21548 chr4 190214555 + 112190395 112190714 AluSp 311 + 0 298 54437 19 20 12 89 14 0 130 3 4 44 chain 16324 chr4 190214555 + 112210353 112210538 LTR12_ 688 + 503 688 60601 185 chain 29778 chr4 190214555 + 112281962 112282331 THE1B 368 + 0 368 42261 172 1 0 196 chain 384689 chr4 190214555 + 112361813 112367188 L1PB1 5432 + 26 5422 5403 125 7 0 7 6 13 61 5 5 39 2 3 21 12 12 275 0 4 132 23 25 18 1 0 619 13 17 141 0 33 42 7 8 91 9 11 221 0 5 34 15 6 483 26 22 67 4 5 249 5 0 7 0 10 551 1 3 165 5 0 56 0 2 111 7 9 103 5 7 589 3 0 30 7 8 62 2 12 54 2 7 20 5 0 82 3 0 178 0 3 214 1 2 8 4 1 24 1 0 6 1 0 10 25 19 47 2 1 16 1 0 44 1 0 15 2 0 6 16 6 18 3 1 5 1 0 9 7 5 9 1 0 15 1 0 22 1 0 12 1 0 18 chain 5364 chr4 190214555 + 112397417 112397487 MADE1 96 + 8 93 83887 37 0 15 33 chain 154422 chr4 190214555 + 112459961 112462274 L1PA15 4387 + 1113 3416 12090 130 168 167 110 3 0 274 0 1 4 2 0 67 22 20 329 2 0 72 5 8 7 3 0 7 10 11 373 6 6 29 4 2 133 0 1 286 11 12 6 2 0 41 0 1 4 1 0 11 6 0 7 1 7 177 chain 20926 chr4 190214555 + 112469119 112469355 HERVL-int 5654 + 244 481 55226 91 0 1 145 chain 165838 chr4 190214555 + 112482867 112484699 L1PA3long 6157 + 4307 6157 11347 999 0 1 355 0 15 223 1 0 80 0 2 32 0 1 142 chain 28013 chr4 190214555 + 112493769 112494072 AluYa5 310 + 0 301 44846 97 1 0 35 1 0 169 chain 13060 chr4 190214555 + 112519302 112519532 L1PA8 5853 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1 17 0 1 28 chain 10022 chr4 190214555 + 112831276 112831542 LTR12C 1709 + 772 1037 70372 61 126 6 60 0 119 19 chain 125051 chr4 190214555 + 112836398 112838026 THE1D-int 1627 + 0 1627 14691 37 1 0 730 0 6 8 2 0 3 4 0 13 6 5 84 0 1 80 6 0 186 2 3 265 1 2 15 1 5 184 chain 8427 chr4 190214555 + 112887224 112887448 MER47A 366 + 0 304 73849 11 15 0 21 53 162 6 7 0 24 7 0 80 chain 2603 chr4 190214555 + 112893489 112893551 MADE1 96 + 17 96 102979 15 1 17 20 10 11 16 chain 7803 chr4 190214555 + 112985811 112985980 L1PB1 5432 + 5280 5427 75372 16 24 12 18 3 1 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 14 1 0 4 1 0 5 chain 38417 chr4 190214555 + 113002169 113002589 L1PA3long 6157 + 5604 6024 35778 420 chain 43518 chr4 190214555 + 113185966 113186469 L1P3 4156 + 862 1367 32440 293 0 2 210 chain 20255 chr4 190214555 + 113200802 113201038 L1PA6 6164 + 5920 6156 56075 236 chain 6052 chr4 190214555 + 113380183 113380255 MER41B 635 + 481 554 80891 26 0 1 46 chain 26869 chr4 190214555 + 113399656 113400009 THE1A 353 + 0 353 46444 47 0 1 46 1 0 17 0 2 6 11 9 225 chain 124013 chr4 190214555 + 113400009 113401582 THE1A-int 1579 + 0 1574 14846 97 6 0 405 2 1 523 0 1 484 10 17 46 chain 13131 chr4 190214555 + 113420322 113420486 U1 164 + 0 164 64877 164 chain 6278 chr4 190214555 + 113551511 113551700 MER3 215 + 13 200 80067 37 85 77 37 2 8 28 chain 5025 chr4 190214555 + 113558504 113558572 MER2B 336 + 202 265 85546 39 5 0 24 chain 13524 chr4 190214555 + 113603416 113603563 L1PA3long 6157 + 5826 5973 64283 147 chain 14002 chr4 190214555 + 113719158 113719558 LTR54B 464 + 0 464 63592 98 65 130 21 0 10 39 124 113 53 chain 112754 chr4 190214555 + 113795939 113797250 SVA_B 1603 + 44 1602 16714 22 0 5 598 0 3 5 1 0 32 0 241 116 1 2 529 2 0 5 chain 559156 chr4 190214555 + 113852146 113858295 L1PA3long 6157 + 3 6157 196 1197 3 0 1963 0 2 23 0 1 847 0 3 355 0 1 1140 0 1 621 chain 3509 chr4 190214555 + 113863071 113863112 MLT2A1 477 + 436 477 95177 41 chain 7167 chr4 190214555 + 113890180 113890266 L1P2 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114051177 HERV17-int 4347 + 13 4347 5541 14 1 0 51 1 0 35 2 0 26 1 0 155 5 0 9 1 0 983 0 1 175 7 8 502 0 1 614 1 2 1183 0 2 169 0 5 399 chain 28511 chr4 190214555 + 114051490 114051816 LTR17 781 + 0 326 44109 326 chain 216387 chr4 190214555 + 114067568 114070026 L1PA5 6144 + 3683 6138 9138 1338 1 0 273 2 0 844 chain 39778 chr4 190214555 + 114075447 114076015 L1PA17 2846 + 2044 2622 34838 4 1 0 58 3 18 220 0 1 11 0 4 140 5 0 33 1 0 55 6 4 8 1 0 22 chain 20089 chr4 190214555 + 114084608 114084858 L1PA6 6164 + 5904 6156 56270 38 0 2 212 chain 86196 chr4 190214555 + 114234421 114235880 L1PB1 5432 + 4098 5398 20388 285 1 0 4 0 1 238 4 0 472 129 8 8 5 0 24 1 0 8 1 0 5 35 29 39 1 0 13 5 4 41 97 80 13 1 0 22 1 0 6 chain 136192 chr4 190214555 + 114261300 114262954 L1PA6 6164 + 4506 6162 13420 20 0 1 420 0 1 366 0 2 380 13 14 292 1 9 11 8 0 127 3 0 13 chain 501984 chr4 190214555 + 114287041 114293164 L1PA6 6164 + 0 6159 3059 237 0 2 23 3 2 194 0 1 59 0 2 47 1 0 103 0 2 93 0 1 140 0 4 552 1 0 62 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126557835 L1PA6 6164 + 3031 6154 7886 152 7 8 140 1 0 199 1 0 166 1 0 444 7 21 204 0 4 111 0 2 1350 1 0 322 chain 40252 chr4 190214555 + 126587972 126588463 L1PA7 6471 + 5979 6468 34478 152 0 1 322 3 0 14 chain 4357 chr4 190214555 + 126621610 126621656 L1PA17 2846 + 750 796 89126 46 chain 5144 chr4 190214555 + 126652084 126652150 Tigger3d 321 + 1 69 84942 43 0 2 23 chain 494301 chr4 190214555 + 126669749 126675723 L1PA6 6164 + 0 6162 3302 369 0 8 18 19 17 88 11 10 205 0 1 854 3 11 146 3 4 594 0 1 147 0 15 530 0 132 34 5 6 122 0 1 587 2 1 444 5 18 415 1 0 344 0 1 44 0 5 70 0 1 305 0 1 48 1 0 135 0 7 263 20 20 125 6 4 11 chain 13344 chr4 190214555 + 126698903 126699089 MER44A 345 + 156 343 64557 95 8 9 83 chain 126052 chr4 190214555 + 126770625 126772172 SVA_B 1603 + 41 1600 14545 44 0 2 778 45 8 19 7 55 23 17 20 8 3 0 17 1 0 585 chain 3972 chr4 190214555 + 126771447 126771492 SVA_B 1603 + 1029 1074 71984 1 0 1 4 1 0 39 chain 283578 chr4 190214555 + 126812791 126816365 L1PA7 6471 + 2709 6467 7326 178 1 5 125 0 10 102 0 1 74 0 1 163 15 14 121 1 0 76 0 2 88 3 0 262 1 0 225 1 9 6 8 0 98 1 0 78 1 0 96 0 152 56 4 3 12 0 4 80 5 7 64 0 1 162 0 1 515 2 6 119 0 3 13 13 5 28 1 4 32 2 0 31 0 11 360 9 17 329 4 0 9 chain 231005 chr4 190214555 + 126919108 126921978 L1PA7 6471 + 3561 6468 8721 66 3 0 5 0 3 150 12 11 40 1 0 92 5 15 14 9 10 232 0 1 57 1 2 59 0 3 258 0 3 1044 0 6 37 0 1 38 1 0 356 2 1 241 9 10 83 0 14 55 chain 56013 chr4 190214555 + 126922387 126923307 LTR12D 1347 + 405 1224 27561 131 0 31 18 10 9 84 143 0 15 0 18 292 24 20 26 4 3 30 1 0 142 chain 2538 chr4 190214555 + 126922681 126922773 LTR12D 1347 + 651 720 69509 39 44 21 9 chain 60863 chr4 190214555 + 126925595 126926786 L1PA8A 6298 + 5104 6284 26142 279 12 0 694 0 1 105 3 0 5 7 10 86 chain 561503 chr4 190214555 + 126928255 126934284 L1PA2 6032 + 0 6029 144 6029 chain 16079 chr4 190214555 + 127013444 127013682 L1PA16 3655 + 3319 3556 60918 21 1 0 73 9 10 16 10 9 108 chain 551182 chr4 190214555 + 127020568 127026555 L1PA2 6032 + 1 6027 661 681 0 3 5277 0 36 29 chain 27913 chr4 190214555 + 127026555 127026893 L1PA3long 6157 + 5818 6157 45012 95 1 0 82 14 16 146 chain 48832 chr4 190214555 + 127077870 127078460 L1PA7 6471 + 5877 6468 30000 259 5 6 326 chain 314046 chr4 190214555 + 127089212 127093652 L1PA11 4918 + 37 4517 6529 5 2 0 74 1 0 12 2 0 50 1 0 35 11 17 120 0 3 61 0 2 143 14 18 14 0 2 94 1 0 43 18 15 234 13 14 56 27 0 19 17 7 128 1 0 15 0 32 170 4 8 139 0 3 115 0 1 13 0 1 115 4 3 245 0 4 38 0 4 57 60 53 26 1 0 3 2 0 12 17 22 35 14 15 381 0 1 227 1 27 587 1 9 22 11 9 741 3 0 52 11 14 73 2 0 10 7 6 17 4 0 9 chain 211264 chr4 190214555 + 127107165 127110489 L1PA13 3608 + 90 3496 9311 19 6 4 19 9 6 25 7 6 8 3 0 23 31 19 60 18 16 81 54 52 17 6 4 11 9 4 17 1 0 17 14 12 8 2 0 9 6 5 25 1 0 52 27 25 226 18 19 23 1 0 37 12 12 561 1 5 136 7 10 32 0 92 85 9 29 53 0 4 72 0 1 90 0 1 111 12 16 156 15 12 377 0 2 336 1 0 28 65 70 44 2 0 16 0 1 44 1 0 32 3 0 11 21 18 5 0 1 41 9 5 18 1 0 22 0 3 5 chain 66504 chr4 190214555 + 127129759 127130500 L1PA3long 6157 + 5406 6147 24817 134 0 1 474 1 0 132 chain 3377 chr4 190214555 + 127160566 127160625 LTR50 688 + 38 98 96322 27 7 8 25 chain 119453 chr4 190214555 + 127183866 127185425 THE1B-int 1605 + 0 1599 15620 224 0 15 187 30 55 38 3 1 161 8 9 243 0 1 81 0 1 56 1 0 527 chain 4831 chr4 190214555 + 127190381 127190441 LTR50 688 + 44 104 86533 60 chain 149331 chr4 190214555 + 127200500 127202191 L1P1 4361 + 2645 4341 12399 484 0 5 1017 1 0 103 0 3 48 1 0 23 2 1 12 chain 46872 chr4 190214555 + 127265354 127265898 L1PA5 6144 + 5596 6144 30708 50 0 1 250 1 3 46 0 1 197 chain 13085 chr4 190214555 + 127286441 127286582 L1PA2 6032 + 5891 6032 64953 141 chain 237667 chr4 190214555 + 127298873 127302515 L1PB1 5432 + 1786 5422 8529 294 16 16 216 57 66 65 17 17 31 5 1 145 39 46 59 47 67 39 0 1 163 1 2 181 0 2 523 4 0 8 1 10 51 35 11 16 4 8 120 15 12 6 0 3 204 5 4 96 6 7 352 3 0 15 0 1 150 0 8 168 2 0 128 5 4 11 5 4 21 8 6 14 5 1 9 3 1 9 20 0 42 3 2 15 8 7 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219 6 5 29 0 1 277 0 4 24 0 1 337 10 5 80 1 0 120 11 14 201 3 4 20 2 0 30 40 3 8 1 0 11 19 52 43 20 18 42 1 0 31 9 0 16 3 1 4 1 0 14 2 0 24 1 0 22 1 0 12 1 0 16 1 0 4 chain 33169 chr4 190214555 + 127434223 127434680 L1PA16 3655 + 3110 3563 39387 91 1 0 92 17 14 58 0 1 49 1 0 148 chain 55051 chr4 190214555 + 127438407 127439303 L1PA14 3548 + 2592 3465 27855 19 0 11 67 1 0 233 1 2 9 1 0 7 3 0 13 2 0 47 2 0 5 2 0 105 12 8 13 0 6 7 20 11 66 1 0 111 26 21 24 13 10 9 1 0 19 1 0 40 6 0 10 chain 13727 chr4 190214555 + 127442098 127442328 L1MC2 1988 + 1575 1806 63979 6 1 0 90 42 44 91 chain 522110 chr4 190214555 + 127472690 127478646 L1PA4 6152 + 6 5974 2175 947 0 4 1593 0 1 254 0 4 483 7 6 374 0 1 247 1 2 580 0 1 816 0 1 654 chain 48335 chr4 190214555 + 127529825 127530387 LTR10C 591 + 0 562 30168 562 chain 14598 chr4 190214555 + 127540443 127540745 MER34C_ 573 + 32 300 62801 20 35 0 58 10 6 107 50 55 22 chain 26435 chr4 190214555 + 127553188 127553560 THE1C 375 + 0 375 47074 108 7 8 9 3 0 58 12 12 114 0 6 34 1 0 26 chain 3703 chr4 190214555 + 127559580 127559621 MER52D 1964 + 1157 1198 93596 41 chain 551447 chr4 190214555 + 127588930 127594962 L1PA2 6032 + 0 6032 641 256 1 0 454 1 0 1488 1 0 1351 0 2 1954 0 1 526 chain 3649 chr4 190214555 + 127610499 127610540 L1MC4 1079 + 566 607 94031 41 chain 91926 chr4 190214555 + 127670606 127671968 L1PB4 2604 + 1233 2552 19352 71 1 0 41 4 0 9 1 0 34 0 2 336 1 0 53 25 27 59 3 1 124 0 3 144 0 1 4 1 0 144 16 18 21 1 0 52 5 1 16 57 17 70 0 2 69 chain 558445 chr4 190214555 + 127676610 127682756 L1PA3long 6157 + 0 6157 228 793 0 1 1532 1 0 1676 0 3 1873 0 9 253 1 0 17 chain 140040 chr4 190214555 + 127751024 127752578 L1PA5 6144 + 4584 6144 13093 329 1 2 382 0 4 702 0 1 140 chain 4228 chr4 190214555 + 127855224 127855273 U5 65 + 0 49 89948 49 chain 165555 chr4 190214555 + 127857816 127860051 L1PBa 3878 + 1190 3419 11372 149 0 1 19 1 0 10 1 0 176 0 10 8 18 8 51 11 10 550 0 1 119 0 5 106 4 5 191 10 11 84 11 6 39 0 1 50 0 1 4 0 2 201 19 9 38 0 2 163 3 0 199 chain 508314 chr4 190214555 + 127860059 127865687 L1PA3long 6157 + 1 6153 2830 93 0 526 1002 0 6 698 1 0 851 2 0 2280 1 3 543 7 0 150 chain 54471 chr4 190214555 + 127866070 127866887 L1PB 1623 + 791 1576 28061 128 0 1 32 0 1 92 0 4 256 3 0 120 0 1 20 1 0 7 2 1 28 10 6 14 4 0 22 55 29 23 chain 10064 chr4 190214555 + 127868455 127868687 L1PB1 5432 + 5117 5319 70273 21 8 6 12 7 3 9 2 0 52 2 1 15 1 0 43 10 1 16 2 0 6 15 6 11 chain 159932 chr4 190214555 + 127924352 127926227 L1PA7 6471 + 4570 6461 11760 19 0 1 365 1 0 666 0 3 575 0 4 221 7 16 21 chain 19646 chr4 190214555 + 127953222 127953456 AluSp 311 + 16 250 56861 234 chain 24477 chr4 190214555 + 127967940 127968215 AluYc3 301 + 1 277 50068 119 1 2 155 chain 19832 chr4 190214555 + 127985750 127986026 AluSc 308 + 29 292 56630 89 5 0 31 22 14 129 chain 22133 chr4 190214555 + 128021977 128022236 L1PA6 6164 + 5903 6162 53654 259 chain 9894 chr4 190214555 + 128042466 128042602 L1PA8 5853 + 5713 5847 70625 27 2 1 19 2 1 86 chain 24624 chr4 190214555 + 128110428 128110693 AluYa5 310 + 37 298 49832 56 4 0 205 chain 556706 chr4 190214555 + 128213789 128219796 L1PA2 6032 + 0 6020 313 736 0 10 2397 0 2 1766 0 1 1108 chain 4125 chr4 190214555 + 128231239 128231294 Tigger3b 1229 + 549 610 90621 18 0 6 37 chain 28496 chr4 190214555 + 128245300 128245654 THE1A 353 + 0 353 44133 110 1 0 201 0 1 4 1 0 37 chain 19719 chr4 190214555 + 128260172 128260449 LTR2 463 + 190 463 56761 49 4 1 132 10 11 28 1 0 28 1 0 24 chain 268007 chr4 190214555 + 128262141 128266474 Harlequin-int 5206 + 125 3370 7763 90 0 4 75 2 1 10 0 2 62 3 1 309 1 0 255 0 1 547 0 1 859 0 1 219 6 5 670 1092 0 133 chain 40574 chr4 190214555 + 128266486 128267203 HERVE_a-int 7009 + 6304 6990 34242 4 0 1 80 4 3 41 1 0 32 1 0 11 1 0 15 1 0 5 2 0 7 1 0 37 1 0 21 5 4 41 9 7 26 7 5 55 2 1 9 2 0 26 3 0 54 3 1 27 1 0 30 10 7 12 0 2 23 2 0 32 55 49 18 chain 7545 chr4 190214555 + 128382837 128382932 MADE1 96 + 0 96 76010 45 0 1 50 chain 124051 chr4 190214555 + 128485190 128487447 L1PA15 4387 + 2398 4326 14837 216 10 22 43 5 9 34 25 27 50 3 4 180 0 3 31 1 0 6 0 2 57 0 1 85 2 0 26 1 2 33 49 19 65 1 5 15 53 58 255 3 0 166 2 0 17 4 0 61 10 8 35 1 0 69 0 1 4 317 0 94 8 7 22 1 0 54 7 6 17 8 13 47 6 3 44 3 1 11 chain 27867 chr4 190214555 + 128611704 128612130 MLT2A1 477 + 0 464 45082 168 9 6 20 1 0 7 0 3 54 9 16 111 10 46 7 4 0 26 chain 25050 chr4 190214555 + 128620339 128620675 LTR12 884 + 131 531 49188 13 0 66 166 3 1 89 1 2 12 9 8 43 chain 9606 chr4 190214555 + 128626377 128626560 MLT1A1 405 + 190 382 71255 47 8 8 19 37 46 72 chain 62549 chr4 190214555 + 128647359 128648058 L1PA3long 6157 + 5463 6157 25744 526 7 1 12 0 1 154 chain 98919 chr4 190214555 + 128672480 128673854 LTR12C 1709 + 0 1709 18421 21 0 9 10 12 3 295 19 62 64 8 9 179 0 278 143 0 47 87 24 0 17 11 4 306 11 10 77 16 14 74 chain 5410 chr4 190214555 + 128677756 128677817 LTR48 738 + 0 61 83659 61 chain 38557 chr4 190214555 + 128691023 128691485 LTR2 463 + 0 463 35672 360 14 15 88 chain 36831 chr4 190214555 + 128703948 128704402 LTR2 463 + 0 463 36860 127 0 3 91 0 5 68 0 1 168 chain 29380 chr4 190214555 + 128737187 128737591 MER48 407 + 0 407 42769 154 4 5 26 22 24 198 chain 47840 chr4 190214555 + 128741714 128742417 LTR12_ 688 + 0 688 30346 182 24 0 62 69 78 366 chain 2966 chr4 190214555 + 128765371 128765410 L1MC3 1789 + 1346 1384 100220 31 1 0 7 chain 13987 chr4 190214555 + 128883384 128883571 L1PA7 6471 + 6288 6466 63617 168 9 0 10 chain 487858 chr4 190214555 + 128895551 128901052 L1PA4 6152 + 1 5519 3473 287 1 0 452 13 26 735 0 1 462 0 1 2700 1 0 639 0 4 211 chain 74624 chr4 190214555 + 129002562 129003443 L1PA7 6471 + 5585 6470 22928 36 0 3 772 4 5 69 chain 71302 chr4 190214555 + 129005388 129006168 L1PA3long 6157 + 5369 6149 23695 780 chain 469311 chr4 190214555 + 129023547 129028886 L1PA4 6152 + 0 5350 3879 117 1 0 4 0 1 279 2 1 178 1 0 118 7 0 10 12 5 3136 0 25 407 0 1 1019 0 1 48 chain 299550 chr4 190214555 + 129029704 129033506 L1PA8 5853 + 2081 5853 6847 193 8 12 809 0 3 115 1 0 4 1 2 37 26 11 105 6 18 255 0 1 268 6 6 103 7 9 151 0 8 150 0 1 78 35 0 74 2 0 512 0 3 73 0 2 410 12 4 66 1 0 44 2 0 69 11 9 34 0 1 19 2 1 19 1 0 93 chain 134349 chr4 190214555 + 129048150 129049628 L1PA3long 6157 + 4667 6146 13612 1181 0 1 297 chain 49463 chr4 190214555 + 129080872 129081454 LTR14C 587 + 0 587 29784 351 8 13 223 chain 108394 chr4 190214555 + 129088694 129090021 L1PA7 6471 + 5151 6468 17265 420 15 12 37 9 8 216 6 0 624 chain 74113 chr4 190214555 + 129131009 129131986 MER11A 1151 + 0 1147 23063 55 0 99 22 8 0 54 1 0 64 4 0 149 0 1 90 3 4 104 1 0 42 6 7 117 0 81 31 0 1 46 1 0 16 0 1 163 chain 13664 chr4 190214555 + 129131990 129132187 Tigger3b 1229 + 416 643 64067 87 1 19 20 0 2 28 4 14 57 chain 36729 chr4 190214555 + 129144889 129145434 LTR3B_ 500 + 0 500 36942 274 0 7 50 1 0 7 12 0 10 51 10 49 0 2 91 chain 75253 chr4 190214555 + 129315304 129316212 L1PA8A 6298 + 5361 6291 22782 12 0 3 115 0 3 76 0 2 603 5 19 97 chain 393039 chr4 190214555 + 129446851 129452219 L1PA8 5853 + 478 5853 5267 36 139 128 12 7 9 38 78 81 38 1 3 232 9 14 376 14 15 117 3 5 313 0 1 130 3 0 340 0 1 210 8 7 520 0 4 275 0 1 4 1 0 89 20 20 407 0 2 858 1 0 103 14 16 126 0 2 33 5 0 40 0 2 153 0 3 218 0 2 48 32 31 23 1 0 44 2 0 83 1 0 49 2 1 9 0 1 9 1 0 93 chain 56148 chr4 190214555 + 129518948 129519728 LTR17 781 + 0 774 27521 68 3 0 51 0 9 169 11 1 29 6 7 60 6 7 47 0 1 172 0 1 52 6 0 35 23 1 19 0 22 23 chain 3837 chr4 190214555 + 129556493 129556570 L1PB1 5432 + 5358 5430 92583 14 1 0 20 1 0 8 5 4 14 1 0 5 1 0 7 chain 41779 chr4 190214555 + 129565969 129566424 L1PA2 6032 + 5577 6032 33502 455 chain 279239 chr4 190214555 + 129590590 129593865 L1PA5 6144 + 2848 6128 7445 1292 5 9 1362 0 1 46 8 8 218 0 1 247 1 0 96 chain 446933 chr4 190214555 + 129651973 129657657 L1PA8 5853 + 108 5853 4436 38 1 42 114 6 10 322 0 6 10 20 12 4 0 1 4 0 1 473 0 1 8 0 1 366 1 2 127 0 2 83 1 0 282 3 1 61 0 1 4 1 0 71 0 3 129 0 4 214 0 1 243 0 1 184 12 16 462 1 0 106 1 2 107 7 8 392 1 2 98 0 1 212 1 0 28 1 2 211 5 1 143 1 0 5 4 12 267 2 0 33 0 6 16 5 4 26 1 0 148 1 2 146 1 0 90 0 1 7 1 0 74 1 0 46 2 0 69 1 0 11 9 8 47 1 0 17 1 0 93 chain 10559 chr4 190214555 + 129663903 129664032 MER85 139 + 0 139 69307 89 0 10 40 chain 27164 chr4 190214555 + 129669774 129670061 AluYb8 318 + 28 315 46017 287 chain 24527 chr4 190214555 + 129676111 129676458 THE1A 353 + 7 353 49983 98 31 30 218 chain 120194 chr4 190214555 + 129676458 129678022 THE1A-int 1579 + 0 1579 15501 13 0 1 171 0 9 8 9 0 252 25 27 183 1 0 47 3 5 215 0 9 422 15 8 126 0 1 59 0 8 15 chain 23506 chr4 190214555 + 129678022 129678352 THE1A 353 + 0 333 51582 106 8 7 24 0 4 30 1 0 6 6 7 149 chain 31853 chr4 190214555 + 129694674 129695029 L1HS 6032 + 5677 6032 40454 355 chain 61682 chr4 190214555 + 129721761 129722826 L1PA14 3548 + 2444 3485 25948 6 1 0 67 10 1 19 2 0 5 8 9 28 1 0 76 1 0 34 1 0 81 0 3 66 7 6 33 17 29 5 0 3 23 3 1 14 2 0 47 9 5 34 1 2 73 9 5 12 2 0 5 2 1 84 1 0 107 4 3 11 5 1 35 4 2 13 1 0 5 1 0 7 4 9 26 1 0 18 6 0 7 1 0 20 chain 17888 chr4 190214555 + 129850530 129850845 L1PA15 4387 + 4013 4326 58774 60 0 1 12 19 18 27 1 0 54 1 0 21 4 0 11 1 0 8 5 15 27 6 3 44 3 1 11 chain 533395 chr4 190214555 + 129853906 129859921 L1PA3long 6157 + 0 6149 1687 152 0 1 102 0 1 521 1 129 1018 4 5 1210 0 15 115 0 4 655 1 2 496 0 1 338 22 0 545 0 4 835 chain 34616 chr4 190214555 + 129867781 129868329 MLT2A2 560 + 0 560 38277 123 0 1 26 69 68 118 9 10 27 1 0 5 0 1 20 3 14 147 chain 21578 chr4 190214555 + 129918811 129919162 THE1C 375 + 0 375 54392 89 21 28 73 1 0 13 0 3 36 31 46 87 chain 215280 chr4 190214555 + 129963326 129965685 L1PA2 6032 + 2425 4786 9166 143 0 1 1609 0 1 607 chain 143127 chr4 190214555 + 130012604 130014348 LTR12C 1709 + 0 1709 12850 141 7 13 337 1 2 344 1 0 53 1 0 118 41 0 103 1 0 6 2 0 101 2 0 6 0 4 282 0 2 197 chain 88754 chr4 190214555 + 130018952 130019902 L1HS 6032 + 2017 2968 19898 414 0 1 536 chain 81841 chr4 190214555 + 130056558 130057616 MER11C 1089 + 0 1063 21274 83 1 0 166 0 1 63 0 4 69 1 0 291 0 1 12 0 4 5 1 0 37 0 1 38 3 0 288 chain 4437 chr4 190214555 + 130090821 130091152 LTR12D 1347 + 652 1078 88689 46 260 355 25 chain 184543 chr4 190214555 + 130132398 130135179 L1PBa1 4058 + 1268 3994 10362 75 0 6 29 3 5 48 1 2 196 17 30 8 11 0 144 0 1 120 1 0 4 5 6 85 24 21 79 1 0 325 0 2 15 13 6 131 0 7 7 49 0 83 0 1 154 1 0 4 0 1 157 0 5 84 0 2 5 2 0 194 8 7 118 1 0 48 1 0 60 17 10 112 1 0 7 1 0 23 17 16 33 2 0 94 15 13 22 18 11 11 2 0 19 2 1 4 1 0 10 40 47 5 1 0 13 chain 16277 chr4 190214555 + 130137213 130137579 L1PB1 5432 + 5103 5420 60645 11 17 0 24 1 0 11 1 0 9 15 9 53 2 1 15 1 0 44 1 0 16 25 12 19 8 5 14 2 0 22 3 2 17 6 5 12 1 0 16 chain 77819 chr4 190214555 + 130159219 130160144 L1PA7 6471 + 5517 6447 22140 104 1 0 77 0 2 179 0 2 17 1 3 546 chain 21985 chr4 190214555 + 130176898 130177268 L1PB2 3958 + 3473 3838 53858 12 0 3 57 1 0 8 18 16 49 5 4 59 11 10 57 6 4 22 2 1 63 chain 40783 chr4 190214555 + 130226986 130227481 MER9a1 513 + 0 513 34107 109 0 16 329 0 2 57 chain 11018 chr4 190214555 + 130243037 130243182 MER41B 635 + 0 148 68528 43 0 1 45 4 3 6 0 2 28 0 1 19 chain 33778 chr4 190214555 + 130325105 130325474 L1PA3long 6157 + 5786 6155 38867 369 chain 29671 chr4 190214555 + 130424899 130425221 AluYb8 318 + 0 318 42408 126 4 0 192 chain 13401 chr4 190214555 + 130434351 130434589 MER4D1 891 + 567 794 64471 121 55 45 12 1 0 49 chain 100490 chr4 190214555 + 130443876 130444978 L1PA3long 6157 + 5054 6157 18239 261 1 2 840 chain 17915 chr4 190214555 + 130483179 130483600 L1PB 1623 + 1189 1575 58740 77 14 18 22 1 5 41 21 11 83 1 0 6 1 0 32 1 0 4 95 65 22 chain 13000 chr4 190214555 + 130484967 130485252 L1PB1 5432 + 5162 5422 65116 6 2 0 52 18 16 43 4 3 13 33 22 10 2 0 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 14 1 0 4 chain 5681 chr4 190214555 + 130499915 130500000 MER4B 649 + 0 84 82424 27 6 5 52 chain 8215 chr4 190214555 + 130593955 130594063 LTR49 580 + 470 578 74366 22 1 0 6 0 1 79 chain 26838 chr4 190214555 + 130630448 130630756 L1PA3long 6157 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385 chain 10187 chr4 190214555 + 136004959 136005094 L1PA7 6471 + 6324 6461 70038 24 6 8 105 chain 96928 chr4 190214555 + 136070592 136071682 L1PA5 6144 + 5051 6141 18661 1090 chain 61331 chr4 190214555 + 136200992 136201740 LTR17 781 + 0 770 26026 119 0 9 179 10 0 20 0 1 386 0 22 34 chain 238421 chr4 190214555 + 136253979 136257050 L1PA8 5853 + 2723 5853 8507 78 0 5 6 1 0 123 11 15 30 0 4 134 7 9 63 19 19 595 0 7 130 0 1 7 1 46 585 0 1 227 2 1 4 0 1 188 1 0 7 2 0 78 0 1 403 0 1 72 1 0 45 2 0 69 2 1 15 11 9 32 7 6 19 2 1 92 chain 4518 chr4 190214555 + 136284097 136284157 LTR12_ 688 + 119 180 88218 23 1 2 36 chain 42856 chr4 190214555 + 136341384 136341845 L1PA2 6032 + 5566 6027 32863 461 chain 19334 chr4 190214555 + 136341879 136342156 L1PA15 4387 + 2719 3006 57195 13 3 5 70 0 4 123 0 1 8 0 4 13 16 15 31 chain 235643 chr4 190214555 + 136360806 136363680 L1PA6 6164 + 3281 6157 8581 97 7 11 236 1 0 38 22 5 362 2 0 745 3 4 86 13 21 377 0 1 52 4 11 48 1 0 23 0 1 753 0 1 4 chain 4392 chr4 190214555 + 136370577 136370670 MER2 342 + 45 148 88928 6 4 0 17 19 33 47 chain 7136 chr4 190214555 + 136382376 136382507 ERVL-int 1947 + 1360 1492 77149 21 34 35 76 chain 4873 chr4 190214555 + 136395858 136395979 LTR12C 1709 + 961 1086 86307 41 47 51 33 chain 7385 chr4 190214555 + 136500954 136501093 Tigger1 2417 + 2202 2336 76436 6 0 1 25 4 0 22 3 0 18 18 19 43 chain 60550 chr4 190214555 + 136594499 136595380 LTR12D 1347 + 400 1339 26217 131 41 0 5 0 31 34 4 5 92 15 8 241 0 79 23 4 3 30 1 0 40 9 5 22 7 8 182 chain 178267 chr4 190214555 + 136637002 136639845 HUERS-P2-int 2744 + 20 2742 10667 11 2 0 11 0 1 12 1 0 20 10 9 7 1 0 50 7 6 16 3 0 10 21 17 73 4 1 5 1 0 10 22 16 20 29 17 50 17 8 41 3 4 6 6 0 23 0 1 23 7 5 5 0 1 88 5 7 72 74 19 65 8 6 243 3 2 15 1 0 94 1 12 135 2 1 4 0 1 124 10 11 213 2 1 636 29 13 25 7 7 37 0 12 35 9 8 55 1 0 71 2 0 25 0 1 5 5 0 39 2 1 9 1 0 7 6 4 14 1 0 25 0 1 14 3 0 10 8 7 16 1 0 9 2 0 5 2 0 12 2 0 27 chain 4983 chr4 190214555 + 136656003 136656067 MLT1A0 366 + 85 149 85736 64 chain 20591 chr4 190214555 + 136667367 136667622 AluSp 311 + 50 304 55656 57 1 0 197 chain 5965 chr4 190214555 + 136716548 136716710 MER61A 341 + 200 341 81212 15 6 5 45 64 44 32 chain 6556 chr4 190214555 + 136776605 136776713 THE1D-int 1627 + 1505 1614 79141 72 1 0 5 14 16 16 chain 13727 chr4 190214555 + 136833416 136833581 THE1A-int 1579 + 0 168 63980 153 0 3 12 chain 34624 chr4 190214555 + 136833711 136834231 L1PA8 5853 + 5329 5853 38267 235 1 0 44 2 0 69 3 2 9 8 1 6 0 7 10 19 29 19 1 0 12 4 2 54 0 1 24 chain 25984 chr4 190214555 + 136869525 136869809 AluYa5 310 + 27 310 47738 66 1 0 217 chain 12101 chr4 190214555 + 136929635 136930182 LTR12C 1709 + 982 1515 66662 86 33 80 54 269 239 22 38 9 4 1 0 10 9 8 21 chain 53844 chr4 190214555 + 137091669 137092299 L1PA5 6144 + 5498 6134 28272 455 11 12 152 0 5 12 chain 126326 chr4 190214555 + 137171943 137174050 L1PA8 5853 + 4068 5853 14505 464 14 13 44 1 0 69 20 21 106 10 5 217 0 2 58 317 10 8 0 2 477 2 1 45 2 0 67 73 64 14 9 8 90 chain 9431 chr4 190214555 + 137221286 137221462 L1MA7 2200 + 1888 2043 71632 55 11 9 25 33 14 52 chain 59141 chr4 190214555 + 137222828 137223609 LTR12 884 + 0 884 26622 25 2 1 29 0 41 178 1 68 35 2 0 196 6 5 81 1 0 20 0 1 5 7 6 193 chain 4695 chr4 190214555 + 137287344 137287410 HSMAR1 1287 + 0 67 87294 24 1 2 41 chain 10646 chr4 190214555 + 137350279 137350543 L1MA7 2200 + 1552 1816 69131 99 116 116 49 chain 443068 chr4 190214555 + 137351206 137357043 L1PA8 5853 + 51 5847 4512 21 2 0 10 1 0 6 70 31 179 7 11 546 0 10 22 13 14 38 0 1 204 1 6 48 38 39 392 1 0 105 3 4 181 6 1 106 1 0 248 1 2 83 1 6 466 0 4 47 1 0 24 0 1 226 17 18 136 0 1 339 2 4 4 1 0 201 0 1 29 2 1 33 4 6 52 2 1 64 9 10 336 0 3 37 1 0 554 23 1 35 2 0 11 2 0 408 0 1 145 1 0 45 2 0 70 1 0 8 0 6 7 7 0 40 2 1 19 10 9 78 chain 3590 chr4 190214555 + 137365380 137365550 L1MCa 1829 + 1628 1726 94511 5 3 0 20 47 18 27 51 11 17 chain 3700 chr4 190214555 + 137421561 137421604 LTR12C 1709 + 1043 1086 93609 43 chain 37654 chr4 190214555 + 137468997 137469531 MER41C 542 + 1 542 36303 48 0 1 110 0 1 35 7 8 67 1 0 4 28 30 8 0 3 226 chain 36072 chr4 190214555 + 137478310 137478759 LTR2 463 + 0 463 37356 55 0 3 320 9 20 65 chain 525626 chr4 190214555 + 137479541 137486563 HERVE_a-int 7009 + 156 6997 2017 29 3 1 73 2 0 4 1 0 4 2 1 22 1 0 4 9 7 8 1 0 14 15 10 4 1 0 7 1 0 6 13 10 18 28 0 35 4 2 24 1 0 45 1 0 20 1 0 54 1 0 34 1 0 98 1 0 12 1 0 49 1 0 14 1 0 51 6 4 23 1 0 67 1 0 26 1 0 8 1 0 8 0 4 60 3 2 29 10 9 36 2 0 12 1 0 51 2 1 21 1 0 9 8 7 5 1 0 12 4 0 23 1 0 3 1 0 15 1 0 23 1 0 5 1 0 5 1 0 18 1 0 4 1 0 57 2 0 58 1 0 22 1 0 16 1 0 116 2 1 17 1 0 20 2 1 10 1 0 18 1 0 10 2 1 4 1 0 18 1 0 43 1 0 38 1 0 62 2 1 35 2 1 7 1 0 35 1 0 43 1 0 22 2 1 17 2 1 23 2 1 105 2 1 25 6 4 29 36 30 8 1 0 143 2 1 14 1 0 206 1 0 405 1 0 90 1 0 495 1 0 72 0 1 610 0 1 98 0 1 314 1 5 519 0 1 130 9 0 114 1 0 26 1 0 9 1 0 67 7 6 8 1 0 41 1 0 23 1 0 86 1 0 13 2 1 257 2 0 102 1 0 15 1 0 3 1 0 56 3 1 20 1 0 11 1 0 78 5 3 120 0 1 17 1 0 43 1 0 30 2 1 11 1 0 15 8 5 7 1 0 37 2 1 20 1 0 47 1 0 4 1 0 22 12 10 54 1 0 11 4 0 21 8 5 54 3 1 27 1 0 30 1 0 6 3 1 12 0 2 23 2 0 33 5 3 15 32 24 25 2 0 6 chain 40777 chr4 190214555 + 137486581 137487044 LTR2 463 + 0 463 34109 463 chain 339421 chr4 190214555 + 137496278 137500000 L1HS 6032 + 12 3726 6083 1425 0 2 1704 10 0 583 chain 209687 chr4 190214555 + 137500000 137502290 L1PA2 6032 + 3726 6032 9359 291 0 13 476 0 1 619 0 1 333 0 1 571 chain 93453 chr4 190214555 + 137595914 137596947 L1PA4 6152 + 3451 4485 19119 323 1 2 709 chain 59085 chr4 190214555 + 137612895 137613650 LTR17 781 + 0 781 26643 117 8 19 172 10 0 19 0 1 281 0 1 104 2 24 35 0 1 7 chain 24433 chr4 190214555 + 137619380 137619682 AluSp 311 + 0 298 50124 18 6 2 278 chain 12408 chr4 190214555 + 137644895 137645077 MER30 238 + 36 238 66123 68 6 26 23 6 0 8 0 6 71 chain 25862 chr4 190214555 + 137679240 137679592 THE1A 353 + 0 353 47922 62 4 3 19 0 1 4 1 0 20 2 1 92 1 0 77 0 4 70 chain 9098 chr4 190214555 + 137733449 137733562 L1PA8 5853 + 5562 5673 72350 45 3 1 65 chain 118141 chr4 190214555 + 137733569 137734980 LTR12C 1709 + 15 1706 15863 245 0 1 389 0 278 184 1 0 5 3 1 106 0 4 478 chain 463329 chr4 190214555 + 137783663 137789801 L1PA7 6471 + 5 6470 4042 151 5 0 8 0 5 32 11 10 13 57 52 53 74 271 47 11 11 18 19 33 12 5 15 57 1 76 20 0 1 4 1 0 148 7 28 132 2 0 5 5 7 546 0 2 5 0 3 373 0 1 61 0 5 275 9 8 26 4 0 121 0 1 133 2 0 115 6 10 412 6 7 91 1 0 88 1 0 52 0 4 282 0 1 144 0 1 28 0 1 4 3 0 970 0 1 640 0 5 63 1 0 10 0 1 146 4 0 51 3 4 407 1 2 156 chain 25255 chr4 190214555 + 137836136 137836486 MLT2A2 560 + 0 560 48863 123 1 0 45 14 12 74 0 213 93 chain 72565 chr4 190214555 + 137843254 137844040 L1PA2 6032 + 5246 6032 23416 786 chain 61077 chr4 190214555 + 137848581 137849275 L1PA4 6152 + 5190 5884 26087 188 1 0 122 0 1 383 chain 72737 chr4 190214555 + 137853457 137854452 LTR12D 1347 + 0 1347 23371 33 0 4 148 0 21 58 0 8 9 7 0 17 2 38 51 19 20 129 1 32 84 24 58 15 0 24 179 0 200 219 chain 51497 chr4 190214555 + 137867249 137867825 L1PA4 6152 + 4756 5333 29044 207 0 1 369 chain 39239 chr4 190214555 + 137894154 137894650 L1PA7 6471 + 5102 5622 35183 76 0 9 68 0 1 46 3 0 5 15 31 185 0 1 98 chain 30782 chr4 190214555 + 137894653 137895018 L1PA7 6471 + 5630 6006 41317 75 2 0 189 0 2 57 0 11 42 chain 36319 chr4 190214555 + 137895019 137895459 L1PA7 6471 + 6022 6454 37198 303 8 0 129 chain 172526 chr4 190214555 + 137915631 137917950 L1P2 5180 + 1507 3520 10973 10 0 4 492 0 1 155 0 1 149 0 1 160 0 1 234 1 0 74 313 0 388 1 0 38 1 2 303 chain 129203 chr4 190214555 + 137941888 137943437 LTR12C 1709 + 0 1709 14119 309 0 1 4 1 0 385 0 159 253 1 0 5 3 1 107 0 4 481 chain 27498 chr4 190214555 + 137987020 137987524 L1MA5A 2387 + 32 500 45586 5 0 1 10 2 0 7 2 1 17 26 12 27 18 12 26 1 0 6 6 0 9 22 19 18 2 0 104 1 0 175 2 1 18 chain 20494 chr4 190214555 + 138057231 138057580 THE1B 368 + 0 356 55789 111 0 3 6 5 3 53 0 2 6 34 30 13 1 11 6 1 0 62 7 6 44 chain 56259 chr4 190214555 + 138064956 138065602 L1PA5 6144 + 5493 6144 27497 496 9 14 141 chain 9647 chr4 190214555 + 138110193 138110306 MER41C 542 + 421 534 71172 113 chain 14457 chr4 190214555 + 138250572 138250761 L1PA16 3655 + 3382 3569 62956 25 3 1 161 chain 71743 chr4 190214555 + 138352333 138353378 L1PA8 5853 + 4829 5853 23606 53 19 0 111 0 1 79 4 5 15 0 1 229 0 1 109 0 1 128 1 0 46 2 0 68 0 9 7 12 1 47 2 1 19 1 0 93 chain 516831 chr4 190214555 + 138354775 138360893 L1PA5 6144 + 1 6144 2430 122 1 15 292 0 1 177 0 4 83 0 1 470 15 6 236 1 6 1590 3 2 170 2 1 19 0 1 61 0 2 52 5 11 59 0 1 129 2 1 4 0 1 392 1 2 485 2 1 259 7 8 384 1 0 444 0 1 313 1 0 19 0 1 317 chain 69005 chr4 190214555 + 138372103 138373186 L1MA3 4352 + 37 1106 24209 49 0 1 68 1 0 17 6 0 134 4 0 9 36 41 19 0 3 11 0 2 5 7 5 45 0 5 93 4 4 27 34 7 120 0 1 50 13 24 91 1 0 6 1 0 131 1 2 72 3 2 25 chain 39543 chr4 190214555 + 138425137 138425691 MLT2A2 560 + 0 558 34991 112 6 5 63 1 0 29 1 0 87 1 0 103 3 14 70 6 2 42 1 2 29 chain 121180 chr4 190214555 + 138434717 138436246 L1PA8 5853 + 4292 5812 15322 77 0 1 211 3 1 152 0 1 273 3 1 555 1 0 44 2 0 71 1 0 14 1 0 47 2 1 19 1 0 52 chain 56711 chr4 190214555 + 138530440 138531129 L1PA7 6471 + 5783 6466 27355 210 9 7 458 4 0 8 chain 464112 chr4 190214555 + 138542009 138552990 L1PA8A 6298 + 34 6288 4017 6 1 0 16 1 0 12 20 9 23 3 0 24 20 11 12 2 1 9 2 1 12 1 0 6 1 0 9 12 10 9 2 0 4 1 0 12 19 16 8 1 0 6 12 7 9 2 0 31 11 64 11 65 4 31 2 0 19 1 0 4 7 5 76 1 0 287 12 8 335 1 0 97 5 6 660 0 1 39 0 1 59 0 4 188 11 10 12 1 0 105 0 1 176 3 1 609 0 3 197 0 17 39 1 0 51 1 5 25 10 15 243 10 4 49 0 1 211 0 2 290 0 1 239 315 0 188 0 4 273 0 1 68 0 1 110 1 2 4 1 0 214 15 5 7 4378 0 110 2 1 89 0 1 143 1 2 316 0 3 244 chain 406889 chr4 190214555 + 138547723 138552054 L1HS 6032 + 1701 6032 5057 4331 chain 18453 chr4 190214555 + 138553482 138553750 LTR12C 1709 + 1463 1709 58160 78 1 0 45 24 4 29 7 6 84 chain 32582 chr4 190214555 + 138582125 138582574 MLT2A1 477 + 0 477 39888 46 0 1 122 9 6 4 1 0 26 5 2 178 3 37 55 chain 4098 chr4 190214555 + 138605495 138605672 L1M3 994 + 32 201 90793 5 2 0 15 6 9 14 1 0 23 82 73 17 0 1 12 chain 29267 chr4 190214555 + 138608647 138608966 AluYb9 318 + 0 315 42937 118 4 0 197 chain 24242 chr4 190214555 + 138621464 138621778 LTR8 732 + 0 327 50430 56 1 10 56 0 4 201 chain 5840 chr4 190214555 + 138652870 138652999 L1MB7 1623 + 1366 1472 81733 4 1 0 52 1 0 7 33 15 6 3 0 22 chain 117090 chr4 190214555 + 138738765 138740140 SVA_C 1631 + 0 1624 16040 17 0 3 270 0 1 166 0 39 96 1 77 12 1 38 136 14 107 8 0 1 47 1 0 606 chain 7116 chr4 190214555 + 138849431 138849592 MER58A 224 + 60 223 77206 27 57 61 53 2 0 22 chain 151722 chr4 190214555 + 138853459 138855279 SVA_D 2077 + 0 2076 12243 19 5 6 15 0 25 69 1 0 287 1 0 260 0 40 67 40 0 120 2 0 8 3 1 26 45 5 39 0 51 163 0 225 650 chain 4027 chr4 190214555 + 138854382 138854427 SVA_D 2077 + 1257 1302 45828 45 chain 35078 chr4 190214555 + 138860447 138860842 L1PA7 6471 + 6063 6458 37968 395 chain 292785 chr4 190214555 + 138928237 138931902 HERVH-int 3825 + 0 3825 7050 212 0 11 110 1 0 197 2 0 11 1 0 4 0 1 24 2 1 8 2 1 12 22 12 14 1 0 12 22 19 7 1 0 28 2 0 12 2 1 13 67 1 67 0 1 369 2 1 69 6 0 5 7 0 111 0 3 9 1 0 339 4 31 290 0 4 130 0 4 926 9 11 32 15 225 257 5 7 223 chain 28114 chr4 190214555 + 138933141 138933543 LTR7 482 + 0 482 44690 66 11 49 109 0 1 14 11 10 17 0 31 17 0 10 41 1 2 115 chain 16090 chr4 190214555 + 138978775 138978971 MER41C 542 + 15 212 60907 34 0 1 162 chain 4616 chr4 190214555 + 138989234 138989292 HY4 93 + 37 93 87715 34 2 0 22 chain 15671 chr4 190214555 + 138989735 138989925 MLT1B 390 + 196 386 61436 190 chain 6832 chr4 190214555 + 139011644 139011730 MER41B 635 + 52 138 78197 4 1 0 72 0 1 9 chain 6283 chr4 190214555 + 139103676 139103746 MER21B 843 + 659 729 80059 70 chain 32438 chr4 190214555 + 139154451 139155085 MER4A 717 + 0 717 40002 7 1 0 111 14 5 124 23 27 23 20 21 8 0 11 30 0 1 108 108 185 46 1 0 10 chain 4702 chr4 190214555 + 139157888 139157937 tRNA-Arg-CGY_ 50 + 0 49 87259 49 chain 5323 chr4 190214555 + 139169880 139169939 MER65A 464 + 333 392 84086 59 chain 9024 chr4 190214555 + 139171377 139171505 MER85 139 + 0 139 72508 96 3 14 29 chain 3356 chr4 190214555 + 139172835 139172871 MER44B 551 + 492 528 96536 36 chain 26564 chr4 190214555 + 139197199 139197556 THE1B 368 + 0 368 46883 40 0 15 117 10 9 11 2 0 101 1 0 75 chain 5074 chr4 190214555 + 139229881 139229945 L1MB8 1703 + 1524 1588 85280 64 chain 23649 chr4 190214555 + 139322118 139322462 THE1B 368 + 0 368 51360 40 0 15 113 1 0 30 35 45 125 chain 77102 chr4 190214555 + 139414286 139415287 MER11A 1151 + 0 1151 22290 55 0 99 140 6 2 30 0 2 115 0 1 93 0 1 91 0 1 52 6 9 42 2 1 5 0 2 67 1 2 9 6 40 61 0 1 143 0 6 41 0 4 36 chain 23881 chr4 190214555 + 139442391 139442838 MLT2A2 560 + 0 560 50976 169 11 9 15 43 42 56 8 122 12 8 9 24 0 5 37 1 0 5 0 1 14 11 3 25 0 4 8 chain 407336 chr4 190214555 + 139442838 139449372 HERVL-int 5654 + 0 5654 5053 123 0 6 26 304 0 175 6 20 48 12 15 179 0 30 59 8 1 629 0 27 5 0 425 32 1 2 100 2 0 520 0 1 230 0 2 140 0 11 137 1 2 127 0 5 99 8 6 389 1 2 488 3 6 496 2 1 28 1 4 171 0 6 270 403 0 39 0 1 200 0 2 79 0 3 53 729 15 16 1 0 8 0 4 95 4 9 87 chain 3206 chr4 190214555 + 139500151 139500187 MER74A 558 + 499 535 97852 36 chain 2938 chr4 190214555 + 139501293 139501324 L1PB3 3668 + 3532 3563 100516 31 chain 5407 chr4 190214555 + 139569554 139569624 Kanga2_a 737 + 505 578 83674 11 0 3 59 chain 4251 chr4 190214555 + 139598972 139599023 MLT1C 463 + 379 430 89816 51 chain 2584 chr4 190214555 + 139599752 139599804 L2a 937 + 630 681 103078 17 12 11 23 chain 3268 chr4 190214555 + 139616177 139616214 MIR 256 + 183 220 97304 37 chain 63890 chr4 190214555 + 139632365 139633216 MER11A 1151 + 0 1151 25432 292 11 9 25 0 2 60 0 1 8 13 290 118 6 31 26 7 0 20 0 1 34 0 1 17 1 2 86 0 1 127 chain 96724 chr4 190214555 + 139634430 139636503 HERVK11-int 2540 + 686 2303 18688 51 5 0 14 7 0 21 2 0 21 81 45 40 3 0 13 1 0 14 369 80 16 59 43 22 2 0 64 10 9 35 27 23 12 19 9 8 1 0 27 12 1 9 0 1 26 21 1 140 0 1 295 9 4 48 0 1 55 1 0 189 1 0 79 8 7 116 98 55 22 chain 89170 chr4 190214555 + 139637892 139639045 MER11A 1151 + 0 1151 19828 295 1 0 6 1 0 87 0 1 30 28 29 90 0 1 21 1 0 245 2 1 56 3 0 18 0 1 34 0 1 29 1 2 4 1 0 200 chain 5877 chr4 190214555 + 139910186 139910284 MER5A 189 + 29 128 81569 49 16 17 33 chain 41369 chr4 190214555 + 139964060 139964549 L1PA8A 6298 + 5794 6291 33748 82 0 8 217 1 0 84 0 1 105 chain 49089 chr4 190214555 + 139990204 139990762 L1P1 4361 + 3786 4341 29910 365 1 0 154 1 0 23 2 1 12 chain 14774 chr4 190214555 + 140074602 140074885 Tigger4 2445 + 2144 2408 62561 97 0 2 27 4 3 11 2 1 25 15 10 40 6 2 13 2 0 4 1 0 15 5 0 3 2 0 11 chain 40311 chr4 190214555 + 140212648 140213220 MER4A 717 + 0 705 34439 29 0 16 75 1 2 49 1 84 8 4 0 13 1 0 11 3 0 80 0 40 54 1 2 242 chain 268143 chr4 190214555 + 140214274 140217532 HERVH-int 3825 + 179 3825 7755 197 0 4 155 12 7 28 1 0 9 2 1 24 1 93 81 2 1 291 6 74 85 20 10 446 4 31 585 0 1 768 9 11 39 37 247 231 0 2 225 chain 28047 chr4 190214555 + 140218793 140219193 LTR7 482 + 0 482 44791 69 8 46 109 0 1 38 1 32 21 0 10 93 12 14 49 chain 27340 chr4 190214555 + 140224708 140224995 AluYa5 310 + 14 301 45779 287 chain 8658 chr4 190214555 + 140317216 140317615 LTR2 463 + 2 402 37162 365 0 1 34 chain 68188 chr4 190214555 + 140318092 140318831 L1PA2 6032 + 4881 5620 24408 739 chain 1324 chr4 190214555 + 140318831 140318892 LTR2 463 + 402 463 37162 61 chain 41011 chr4 190214555 + 140319985 140320489 MER41A 554 + 0 517 33964 31 0 8 53 0 1 125 1 0 147 0 4 85 0 1 62 chain 102869 chr4 190214555 + 140328931 140330405 L1PB1 5432 + 3947 5418 17969 44 0 1 559 10 11 66 3 0 216 0 1 19 4 0 239 1 2 11 10 7 18 0 3 12 18 12 52 2 1 16 1 0 18 25 26 20 1 15 10 3 1 5 1 0 14 2 0 24 1 0 34 1 0 14 chain 185758 chr4 190214555 + 140337573 140339668 L1PA4 6152 + 3260 5358 10310 225 5 8 1165 2 1 5 0 1 693 chain 10310 chr4 190214555 + 140354992 140355159 MLT2A2 560 + 19 193 69785 99 3 4 20 8 9 19 3 8 15 chain 552692 chr4 190214555 + 140413342 140419363 L1PA2 6032 + 0 6029 571 257 1 0 453 0 7 2483 0 2 2827 chain 4808 chr4 190214555 + 140448967 140449024 MER53 195 + 138 195 86656 57 chain 70201 chr4 190214555 + 140484771 140485562 L1PA3long 6157 + 5366 6157 23950 134 0 1 639 1 0 17 chain 522638 chr4 190214555 + 140508200 140514266 L1PA5 6144 + 0 6141 2154 506 0 1 555 1 0 107 9 0 784 11 12 838 2 0 149 0 1 223 2 0 333 1 0 1785 1 0 246 0 68 209 0 20 304 chain 56629 chr4 190214555 + 140518124 140518775 L1P1 4361 + 3691 4341 27377 301 0 2 157 1 0 154 1 0 23 2 1 12 chain 66501 chr4 190214555 + 140521262 140522018 L1PA4 6152 + 5381 6143 24819 137 2 1 466 5 12 146 chain 63135 chr4 190214555 + 140545779 140546490 L1PA5 6144 + 5427 6138 25593 711 chain 20501 chr4 190214555 + 140582479 140582725 L1PA7 6471 + 6209 6457 55785 67 0 1 21 1 2 157 chain 41527 chr4 190214555 + 140589940 140590483 HSMAR1 1287 + 8 864 33663 57 0 1 171 0 1 45 0 6 251 1 306 18 chain 3603 chr4 190214555 + 140666688 140666739 L1MB8 1703 + 1609 1658 94396 17 2 0 32 chain 30941 chr4 190214555 + 140832248 140832679 MER57A1 433 + 0 433 41181 241 2 3 24 16 18 133 1 0 14 chain 8825 chr4 190214555 + 140841123 140841234 L1PA8 5853 + 5742 5852 72933 18 2 1 91 chain 78477 chr4 190214555 + 140895870 140896700 L1HS 6032 + 5202 6032 21987 830 chain 484738 chr4 190214555 + 140915661 140921175 L1PA3long 6157 + 600 6142 3541 107 0 7 220 3 4 261 5 6 4 1 0 235 0 3 759 0 3 481 1 0 607 0 8 127 1 0 1930 0 1 642 1 8 129 chain 261081 chr4 190214555 + 140921206 140924127 L1PA4 6152 + 3226 6152 7937 2915 0 5 6 chain 17181 chr4 190214555 + 140927305 140927637 MSTA 426 + 0 364 59593 58 0 1 39 8 30 4 1 0 11 9 13 43 0 1 5 44 47 75 10 12 25 chain 53716 chr4 190214555 + 140956630 140957212 L1PA3long 6157 + 4721 5303 28314 582 chain 74932 chr4 190214555 + 140957212 140958046 L1PA3long 6157 + 5308 6150 22859 315 1 2 387 0 7 131 chain 30300 chr4 190214555 + 140988652 140988994 L1PA5 6144 + 5633 5975 41759 342 chain 28130 chr4 190214555 + 141005786 141006084 AluYa5 310 + 0 297 44669 132 1 0 165 chain 11176 chr4 190214555 + 141029716 141029882 L1MB2 1706 + 775 941 68294 11 1 0 104 10 11 40 chain 37813 chr4 190214555 + 141060667 141061148 L1PA7 6471 + 5987 6470 36196 149 1 2 61 7 8 263 chain 120779 chr4 190214555 + 141070076 141071392 L1PA2 6032 + 4713 6029 15384 1316 chain 319784 chr4 190214555 + 141113232 141117152 L1PA7 6471 + 2524 6466 6411 90 0 4 13 9 1 586 0 10 47 0 1 136 0 1 90 5 3 99 0 4 6 3 6 231 12 0 21 1 13 73 0 8 40 0 2 196 0 1 267 0 1 383 0 4 87 4 1 672 1 0 54 0 3 459 2 1 183 8 2 33 0 1 109 chain 34034 chr4 190214555 + 141123307 141124265 MER84 505 + 0 497 38683 223 0 1 21 463 8 131 15 6 23 0 1 37 16 17 29 chain 516817 chr4 190214555 + 141162517 141168948 L1PA7 6471 + 9 6464 2432 173 5 6 222 0 2 28 1 2 26 0 1 424 4 0 8 1 5 482 0 3 226 0 1 111 6 5 99 5 6 268 4 3 206 0 6 58 0 1 86 0 1 170 1 2 863 1 0 456 1 9 140 1 0 631 1 0 244 1 2 22 24 26 588 2 0 254 0 1 588 chain 6934 chr4 190214555 + 141168956 141169040 MSTA-int 1630 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chain 51936 chr4 190214555 + 141483659 141484755 LTR12_ 688 + 0 677 28894 26 1 0 155 25 1 161 289 0 108 104 0 29 1 0 197 chain 7071 chr4 190214555 + 141484440 141484526 LTR12_ 688 + 365 451 77364 86 chain 536141 chr4 190214555 + 141549289 141555444 L1PA4 6152 + 3 6151 1557 125 14 0 214 0 1 167 1 0 63 0 3 57 0 2 206 17 0 472 0 1 176 0 1 1678 1 2 75 0 7 1725 1 0 300 0 4 22 0 4 573 0 2 268 chain 2993 chr4 190214555 + 141563180 141563227 MADE1 96 + 1 46 99900 23 4 2 20 chain 110414 chr4 190214555 + 141582386 141583786 L1PBa 3878 + 859 2266 17018 65 0 1 59 2 3 192 0 1 281 0 1 48 0 1 4 6 0 99 2 0 152 0 10 490 chain 12971 chr4 190214555 + 141598960 141599236 L1PB1 5432 + 5168 5422 65150 50 6 5 13 1 0 44 1 0 16 23 12 10 18 15 13 2 0 23 2 1 22 5 4 8 1 0 18 chain 68022 chr4 190214555 + 141615335 141616610 LTR12D 1347 + 0 1347 24452 202 73 86 19 97 26 48 1 0 155 15 99 17 0 59 107 43 39 23 28 0 7 21 50 63 5 1 21 5 1 25 1 0 33 2 1 195 11 13 33 1 0 24 chain 44475 chr4 190214555 + 141641351 141641853 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chr4 190214555 + 145034139 145034711 MLT2A1 477 + 0 477 43349 140 1 2 26 1 5 22 1 0 162 164 67 11 1 0 23 1 0 19 chain 43096 chr4 190214555 + 145056039 145056586 MER41A 554 + 0 554 32715 15 1 0 390 0 4 59 8 13 67 1 0 6 chain 14268 chr4 190214555 + 145164577 145164780 Tigger4a 237 + 0 203 63243 144 1 0 26 0 1 6 8 0 10 0 8 8 chain 17204 chr4 190214555 + 145262678 145262976 THE1B 368 + 8 356 59570 36 0 6 6 46 55 61 10 9 16 2 0 67 0 38 54 chain 11822 chr4 190214555 + 145283363 145283490 L1PA3long 6157 + 6030 6157 67167 127 chain 17045 chr4 190214555 + 145291446 145291807 THE1D 372 + 7 372 59762 95 139 144 94 1 0 32 chain 21995 chr4 190214555 + 145321436 145321790 THE1D 372 + 0 372 53843 62 1 0 8 0 14 76 59 64 148 chain 554819 chr4 190214555 + 145369388 145375369 L1PA2 6032 + 48 6032 427 638 0 3 5343 chain 173309 chr4 190214555 + 145401683 145403781 L1PA6 6164 + 4045 6156 10938 318 5 9 284 2 1 146 10 11 341 0 1 182 0 1 549 0 1 22 0 6 85 1 9 12 11 3 130 chain 444617 chr4 190214555 + 145457556 145462859 L1PA5 6144 + 14 6144 4479 106 0 14 339 3 0 96 0 1 155 1 2 442 9 0 534 0 1 125 0 22 1345 1 0 175 0 1 354 1 13 438 0 3 389 78 867 243 10 5 179 6 7 274 chain 9518 chr4 190214555 + 145499631 145499806 Tigger4b 360 + 188 360 71437 83 12 11 10 17 16 12 2 1 39 chain 514242 chr4 190214555 + 145574348 145580464 L1PA6 6164 + 0 6153 2557 277 1 0 8 0 1 7 0 1 273 1 0 356 0 8 30 1 0 169 0 1 195 0 1 1005 0 2 374 0 1 221 0 1 252 1 2 87 0 5 36 1 0 4 0 1 379 2 0 675 0 2 348 8 15 446 10 22 107 0 4 738 12 7 92 chain 38304 chr4 190214555 + 145687029 145687499 MER4A1 472 + 2 472 35839 470 chain 18135 chr4 190214555 + 145689669 145689922 L1PA17 2846 + 2011 2264 58528 89 6 7 60 0 1 4 1 0 25 2 1 66 chain 37376 chr4 190214555 + 145698822 145699272 LTR7 482 + 0 482 36500 143 1 0 92 0 31 153 12 14 49 chain 246060 chr4 190214555 + 145699274 145702513 HERVH-int 3825 + 0 2997 8326 21 1 2 509 66 0 38 65 0 10 1 0 24 28 0 15 1 0 12 3 0 7 21 0 11 21 0 8 85 0 41 2 1 24 7 6 50 1 0 356 0 4 302 0 1 157 0 5 49 0 4 26 12 37 204 1 0 90 0 13 970 chain 4187 chr4 190214555 + 145699909 145699961 HERVH-int 3825 + 450 500 84128 39 2 0 11 chain 38086 chr4 190214555 + 145703055 145703503 LTR7 482 + 0 482 36003 224 0 1 39 0 31 124 12 14 49 chain 31226 chr4 190214555 + 145710892 145711312 MER84 505 + 7 451 40948 17 0 12 20 0 3 230 1 0 93 7 15 12 1 3 39 chain 5064 chr4 190214555 + 145714089 145714148 Tigger1 2417 + 2251 2310 85337 59 chain 9909 chr4 190214555 + 145724949 145725172 L1PB1 5432 + 5221 5422 70598 15 1 0 23 1 0 16 46 33 18 2 1 5 1 0 16 2 0 22 1 0 21 1 0 13 1 0 18 chain 14439 chr4 190214555 + 145826459 145826749 MER44A 345 + 1 308 62979 15 36 62 28 1 9 20 27 6 96 1 5 66 chain 35843 chr4 190214555 + 145832611 145833009 LTR7 482 + 0 482 37501 191 0 84 207 chain 309675 chr4 190214555 + 145833011 145836786 HERVH-int 3825 + 0 3825 6620 532 5 0 38 1 0 10 1 0 24 28 0 15 1 0 12 24 0 22 109 0 48 1 0 28 2 1 49 1 0 450 15 0 54 2 0 402 4 31 978 1 0 398 0 3 25 8 218 487 chain 2765 chr4 190214555 + 145833796 145833825 HERVH-int 3825 + 657 686 101864 29 chain 39079 chr4 190214555 + 145838054 145838502 LTR7 482 + 0 482 35303 224 0 1 39 0 31 91 0 2 94 chain 15790 chr4 190214555 + 145862864 145863611 L1MB7 1623 + 851 1532 61296 19 4 0 31 36 37 14 1 0 32 49 49 16 1 0 8 13 12 98 242 198 10 1 0 25 45 52 19 0 7 8 61 32 14 chain 14297 chr4 190214555 + 146035960 146036310 L1PB1 5432 + 5091 5404 63202 12 12 3 8 1 0 24 1 0 9 19 14 6 2 0 53 2 1 16 1 0 44 8 7 8 5 0 7 12 5 19 8 5 10 3 4 26 1 0 19 1 0 13 chain 4025 chr4 190214555 + 146073066 146073144 MER53 195 + 108 187 91274 44 17 18 17 chain 28788 chr4 190214555 + 146160619 146160998 MLT2A1 477 + 0 384 43651 142 0 1 18 9 13 210 chain 87101 chr4 190214555 + 146163312 146164858 L1PB2 3958 + 2608 3817 20217 265 12 10 41 1 0 316 2 1 66 9 7 49 1 0 9 4 0 63 22 16 27 0 1 59 1 0 8 3 1 112 314 0 22 2 1 71 2 0 22 1 0 42 chain 54914 chr4 190214555 + 146304967 146305579 L1PA3long 6157 + 5539 6152 27902 475 0 1 137 chain 57957 chr4 190214555 + 146323725 146324365 L1PA5 6144 + 4034 4674 26978 640 chain 37273 chr4 190214555 + 146349202 146349754 L1PA16 3655 + 2935 3485 36570 33 19 17 93 2 5 121 1 0 14 8 7 64 4 2 124 5 6 64 chain 555405 chr4 190214555 + 146350018 146356052 L1PA2 6032 + 0 6032 386 1370 7 4 3281 0 1 1376 chain 4718 chr4 190214555 + 146389036 146389124 L1PB4 2604 + 2447 2536 87149 50 23 24 15 chain 25808 chr4 190214555 + 146447933 146448227 L1PA4 6152 + 5859 6151 48003 5 2 0 287 chain 3622 chr4 190214555 + 146471131 146471172 Tigger4a 237 + 2 43 94262 41 chain 13515 chr4 190214555 + 146526181 146526358 LTR2C 499 + 322 499 64293 17 1 0 37 3 0 7 0 3 54 0 1 58 chain 265740 chr4 190214555 + 146527461 146530559 HERVE-int 4064 + 0 3091 7806 458 0 1 248 1 4 99 0 1 722 25 1 272 0 1 561 5 7 65 0 1 382 0 8 260 chain 192980 chr4 190214555 + 146530559 146532731 L1PA4 6152 + 3046 5227 9974 204 0 4 32 0 1 228 0 1 175 0 2 23 0 1 1510 chain 3271 chr4 190214555 + 146536243 146536279 MADE1 96 - 59 95 97283 36 chain 62658 chr4 190214555 + 146572164 146572871 L1PA4 6152 + 3573 4281 25721 367 0 1 340 chain 91537 chr4 190214555 + 146593745 146594784 L1PA5 6144 + 4444 5486 19410 16 0 3 1023 chain 46713 chr4 190214555 + 146606532 146607076 L1PA6 6164 + 5617 6159 30766 537 2 0 5 chain 116980 chr4 190214555 + 146620785 146622038 L1HS 6032 + 4779 6032 16061 1253 chain 539694 chr4 190214555 + 146663292 146669634 L1PA3long 6157 + 4 6157 1357 66 0 1 81 0 1 159 325 0 465 1 129 1765 0 1 1746 0 1 891 0 4 823 0 6 4 6 0 10 chain 40958 chr4 190214555 + 146673719 146674271 MLT2A2 560 + 0 560 33997 188 8 16 163 15 5 34 4 14 140 chain 261881 chr4 190214555 + 146677439 146680651 L1PA6 6164 + 2967 6162 7916 231 18 19 22 1 5 660 0 2 615 6 9 63 9 0 50 1 0 311 2 0 237 0 1 119 0 5 19 0 1 54 1 3 295 0 1 325 1 2 14 25 6 10 6 0 95 1 0 21 chain 112428 chr4 190214555 + 146751995 146753264 L1PA4 6152 + 4067 5353 16760 344 0 16 587 7 8 331 chain 194432 chr4 190214555 + 146757424 146760020 L1PBa 3878 + 1130 3757 9908 352 14 0 11 0 19 93 41 12 196 0 5 887 0 3 51 1 5 30 1 6 242 8 53 127 3 0 493 2 1 22 2 0 12 1 0 7 chain 16819 chr4 190214555 + 146760871 146761218 L1PB1 5432 + 5103 5420 60012 11 1 0 24 1 0 9 16 11 11 2 0 7 8 0 45 5 0 16 1 0 44 1 0 15 3 0 7 16 6 18 16 26 20 1 0 18 1 0 13 1 0 16 chain 529931 chr4 190214555 + 146803950 146810411 L1PA7 6471 + 1 6466 1827 329 0 14 512 1 2 276 0 1 627 0 1 200 0 3 385 0 2 341 5 1 649 5 4 345 0 1 780 20 20 174 0 4 77 0 1 235 1 0 585 24 0 52 2 0 88 1 0 129 14 15 345 0 4 14 2 1 76 14 20 143 1 0 9 chain 176143 chr4 190214555 + 146817020 146818974 L1PA3long 6157 + 4083 6038 10771 1924 0 1 30 chain 10963 chr4 190214555 + 146818996 146819115 L1PA3long 6157 + 6038 6157 68604 119 chain 3566 chr4 190214555 + 146820466 146820647 L1MB7 1623 + 1252 1417 94682 14 47 37 22 68 62 30 chain 21882 chr4 190214555 + 146868135 146868382 L1PA3long 6157 + 5910 6157 54000 247 chain 205770 chr4 190214555 + 146892360 146894677 L1PA4 6152 + 3815 6138 9511 539 0 4 580 6 4 362 0 4 830 chain 24226 chr4 190214555 + 146966071 146966425 THE1A 353 + 0 353 50448 47 0 1 41 6 5 14 27 26 219 chain 124218 chr4 190214555 + 146966425 146967994 THE1A-int 1579 + 0 1579 14809 440 0 2 759 7 8 268 0 7 95 chain 19647 chr4 190214555 + 146995822 146996184 THE1B 368 + 0 368 56860 108 44 45 24 61 66 125 chain 76998 chr4 190214555 + 147097304 147098423 L1PB1 5432 + 4334 5424 22317 130 7 17 135 8 5 96 0 1 276 2 4 39 16 16 50 5 0 11 3 0 20 1 0 13 16 11 9 2 0 70 1 0 44 1 0 15 3 0 17 9 0 14 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 88388 chr4 190214555 + 147105559 147106903 L1PREC2 3366 + 1746 3044 19967 156 5 14 103 0 1 108 0 2 382 0 4 236 2 0 41 15 14 38 57 45 15 6 1 15 8 6 17 27 4 5 1 0 10 64 48 33 chain 358810 chr4 190214555 + 147111959 147116822 L1PA6 6164 + 0 6162 5811 566 0 2 22 0 4 660 1 0 332 1 4 424 0 1 207 10 0 30 0 1 81 2 0 463 1 3 135 315 0 88 0 1914 377 0 1 178 311 0 444 0 10 215 chain 57000 chr4 190214555 + 147141009 147141662 L1PA7 6471 + 5797 6455 27265 519 2 0 97 0 1 14 0 6 21 chain 513711 chr4 190214555 + 147183617 147190029 L1PA7 6471 + 6 6461 2588 100 6 7 81 4 5 39 0 15 28 0 1 14 0 8 107 0 1 93 2 3 292 8 9 374 0 1 11 1 12 24 0 4 32 0 1 331 0 1 418 0 1 8 6 2 226 9 4 118 0 2 70 6 4 66 0 2 117 1 2 200 0 1 12 0 4 26 15 0 6 1 5 201 5 8 1166 2 0 480 1 0 69 0 4 129 1 0 275 0 1 177 0 1 69 0 1 147 8 6 72 0 2 618 1 2 139 chain 49706 chr4 190214555 + 147224375 147225018 L1PA8 5853 + 5216 5853 29684 309 1 0 39 1 0 46 2 0 51 0 1 15 7 6 49 10 9 19 1 0 93 chain 470440 chr4 190214555 + 147255044 147260664 L1PA5 6144 + 0 6132 3841 120 0 14 49 0 1 8 21 1 976 9 0 521 0 551 138 0 4 155 0 3 161 0 4 69 0 4 385 4 2 1174 0 4 46 0 2 17 1 6 213 1 0 29 0 1 104 0 1 194 53 13 316 1 0 8 2 0 395 9 9 292 7 0 142 chain 519121 chr4 190214555 + 147292173 147298625 L1PA7 6471 + 0 6468 2310 411 0 1 121 0 12 202 1 0 593 0 1 8 6 0 212 1 0 70 2 1 209 0 2 103 10 20 21 1 2 116 10 17 382 8 0 99 6 7 27 1 2 67 0 4 179 0 4 101 13 4 255 8 2 198 0 8 36 1 0 156 8 0 229 0 1 121 5 6 196 1 2 31 0 10 8 11 1 159 1 4 101 0 2 145 5 9 192 0 1 84 1 0 19 6 5 424 4 5 7 0 2 26 0 1 8 1 0 45 4 1 114 2 0 7 1 2 172 0 1 664 6 0 10 chain 87357 chr4 190214555 + 147306878 147307931 L1PA7 6471 + 5416 6468 20165 293 0 1 83 0 1 45 6 5 292 0 1 322 3 0 9 chain 27261 chr4 190214555 + 147348386 147348947 Tigger3b 1229 + 659 1229 45882 18 134 150 9 5 0 66 3 0 44 0 1 8 4 6 11 10 9 187 11 10 51 chain 146359 chr4 190214555 + 147357237 147358905 SVA_D 2077 + 13 2077 12584 16 10 0 8 7 0 727 4 84 60 1 0 9 0 37 38 0 228 132 0 49 522 0 20 134 chain 36469 chr4 190214555 + 147382314 147382897 L1PA15-16 3068 + 226 806 37096 13 0 1 4 27 23 86 2 0 124 0 1 5 9 5 141 4 0 10 34 43 124 chain 20734 chr4 190214555 + 147386490 147386722 L1PA5 6144 + 5897 6129 55447 232 chain 91740 chr4 190214555 + 147393974 147395165 L1PB1 5432 + 3901 5103 19378 230 0 12 236 0 1 4 2 1 139 4 3 99 2 0 79 0 2 396 chain 503147 chr4 190214555 + 147434630 147440181 L1PA3long 6157 + 609 6157 3026 2711 3 0 375 1 0 2240 0 1 221 chain 208112 chr4 190214555 + 147451204 147453462 L1PA2 6032 + 3772 6032 9417 5 0 1 628 0 1 1625 chain 24198 chr4 190214555 + 147457963 147458297 L1PA8 5853 + 5524 5853 50501 40 9 8 36 2 0 74 1 0 53 0 1 4 4 3 17 1 0 93 chain 3597 chr4 190214555 + 147479962 147480005 MLT1G1 539 + 240 283 94457 43 chain 8405 chr4 190214555 + 147498452 147498639 MER58A 224 + 7 214 73889 10 18 0 8 2 20 39 32 52 78 chain 19861 chr4 190214555 + 147551680 147551982 THE1B 368 + 0 306 56596 169 1 0 6 4 5 4 1 0 8 0 2 6 0 5 4 1 0 4 0 1 14 7 6 6 1 0 66 chain 43166 chr4 190214555 + 147592827 147593670 L1PB1 5432 + 4579 5404 32676 42 1 0 9 12 0 84 4 3 80 11 11 35 9 10 208 51 60 11 3 2 8 3 2 13 6 2 9 3 1 50 11 25 35 2 1 16 3 0 8 65 51 15 1 0 22 1 0 12 chain 23641 chr4 190214555 + 147650823 147651116 AluYk4 311 + 3 295 51367 192 5 4 96 chain 14123 chr4 190214555 + 147664621 147664802 L1PA8 5853 + 5675 5853 63417 4 1 0 61 2 1 19 1 0 93 chain 193643 chr4 190214555 + 147685678 147688205 L1PA5 6144 + 3925 6144 9946 419 0 4 1321 0 2 97 313 0 224 6 5 147 chain 41593 chr4 190214555 + 147708835 147709843 MER41B 635 + 0 635 33629 128 0 1 76 49 39 206 381 20 10 12 0 31 0 1 37 11 16 62 0 3 5 chain 65659 chr4 190214555 + 147849929 147850745 LTR12 884 + 0 884 25041 152 0 66 158 2 0 84 5 7 7 0 1 4 1 0 128 0 1 94 0 1 181 chain 28975 chr4 190214555 + 147922407 147922708 AluYa8 305 + 0 301 43370 301 chain 32590 chr4 190214555 + 147931743 147932358 L1PA11 4918 + 4088 4674 39874 222 8 16 69 1 0 12 2 0 7 1 0 60 2 0 14 1 0 20 1 0 9 8 3 10 13 15 9 1 0 12 3 1 11 91 71 13 3 0 12 chain 59646 chr4 190214555 + 147999062 147999808 LTR17 781 + 0 772 26475 285 0 4 38 1 0 374 1 23 36 0 1 11 chain 5076 chr4 190214555 + 148004616 148004725 MLT1E1A 663 + 359 470 85270 15 39 41 55 chain 27352 chr4 190214555 + 148036338 148036692 THE1C 375 + 0 356 45762 13 0 1 162 1 0 4 0 2 93 1 2 73 1 0 6 chain 491650 chr4 190214555 + 148082267 148088806 L1PA7 6471 + 0 6402 3380 235 2 0 7 7 11 147 8 3 217 13 6 194 0 1 181 4 28 63 0 12 132 6 12 107 1 0 162 0 12 32 0 5 169 28 18 8 0 9 31 0 2 124 0 4 102 0 1 9 2 1 32 2 0 83 0 4 290 4 7 176 1 3 58 0 9 179 0 4 202 1 8 63 0 1 282 0 4 47 1 0 26 2 0 31 1 5 11 0 3 23 0 4 133 0 2 68 0 1 479 308 2 29 0 6 101 0 3 119 0 2 36 0 3 92 0 4 94 1 18 25 1 5 94 0 1 38 1 0 63 0 2 32 0 5 12 7 33 23 5 0 70 0 5 154 1 0 18 5 1 95 0 1 130 0 4 11 0 3 183 5 1 335 0 1 265 chain 18538 chr4 190214555 + 148097635 148097869 MER30 238 + 4 238 58060 103 3 0 27 1 4 100 chain 230641 chr4 190214555 + 148105182 148108012 L1PA8 5853 + 2988 5853 8730 148 4 15 186 1 0 500 0 14 107 0 1 598 0 4 445 4 1 26 0 11 11 0 3 24 0 2 480 1 0 44 2 0 58 36 34 40 2 1 19 1 0 93 chain 77021 chr4 190214555 + 148122630 148123716 MER11A 1151 + 0 1151 22310 55 0 99 22 8 0 51 0 4 59 8 4 32 0 2 112 5 6 92 0 1 145 5 6 120 0 26 26 44 0 22 18 0 36 0 1 6 1 2 38 0 1 98 1 3 82 chain 4171 chr4 190214555 + 148142439 148142487 MSTA 426 + 54 102 90318 48 chain 178744 chr4 190214555 + 148155287 148157305 L1PA3long 6157 + 4169 6147 10651 320 0 2 860 42 0 796 chain 17915 chr4 190214555 + 148304702 148305016 MER61C 433 + 100 413 58742 33 31 30 47 2 0 80 31 34 72 1 0 17 chain 53382 chr4 190214555 + 148358040 148358634 L1PA2 6032 + 5438 6027 28440 583 5 0 6 chain 20054 chr4 190214555 + 148378414 148378808 MSTA 426 + 5 405 56308 138 26 32 30 79 76 19 13 16 89 chain 6711 chr4 190214555 + 148513228 148513335 MER44D 709 + 58 151 78609 10 9 0 16 5 0 67 chain 10457 chr4 190214555 + 148548605 148548735 THE1D 372 + 0 140 69504 65 0 10 65 chain 7859 chr4 190214555 + 148557946 148558037 5S 121 + 0 91 75230 91 chain 3470 chr4 190214555 + 148576209 148576248 MADE1 96 + 53 92 95456 39 chain 3812 chr4 190214555 + 148705678 148705810 MLT1J 494 + 332 463 92759 18 72 71 42 chain 96235 chr4 190214555 + 148762891 148764060 L1PA7 6471 + 3457 4628 18743 27 1 2 4 1 0 39 0 1 81 0 1 308 5 6 465 1 0 237 chain 162069 chr4 190214555 + 148766955 148768725 L1PA2 6032 + 2705 4479 11609 788 0 1 380 0 3 602 chain 265101 chr4 190214555 + 148815641 148819039 L1PA5 6144 + 2749 6130 7824 187 21 0 228 1 0 6 1 0 77 0 5 438 0 1 463 0 1 17 0 1 4 1 0 124 2 1 356 1 0 643 0 1 828 chain 50207 chr4 190214555 + 148837531 148838119 LTR10C 591 + 0 591 29480 135 1 0 268 0 2 105 0 2 79 chain 22845 chr4 190214555 + 148875494 148875770 AluSp 311 + 0 292 52595 45 0 16 231 chain 52863 chr4 190214555 + 148915214 148915899 LTR17 781 + 0 685 28617 156 1 0 22 4 3 146 1 0 11 0 2 83 1 0 4 0 1 196 0 1 60 chain 377576 chr4 190214555 + 148928874 148933971 L1PB1 5432 + 67 5103 5523 234 7 0 7 0 7 37 15 17 221 41 40 671 0 1 18 1 0 28 0 16 31 1 0 8 20 0 8 13 11 226 13 19 177 0 1 50 1 0 356 4 5 240 1 0 4 6 1 86 2 0 77 0 1 44 0 2 99 1 13 19 1 0 49 0 9 479 50 23 318 50 21 141 3 1 335 0 1 410 0 1 83 22 0 59 0 1 330 chain 75983 chr4 190214555 + 148977539 148978383 L1PA4 6152 + 3998 4843 22581 288 0 2 398 1 0 157 chain 32508 chr4 190214555 + 148986097 148986451 L1PA3long 6157 + 5788 6142 39938 354 chain 6233 chr4 190214555 + 148986494 148986568 THE1B-int 1605 + 1524 1598 80229 74 chain 30398 chr4 190214555 + 149038741 149039169 MLT2A1 477 + 0 464 41676 142 8 9 17 0 4 70 1 8 73 1 0 68 8 0 10 0 33 30 chain 453135 chr4 190214555 + 149039199 149046249 HERVL-int 5654 + 2 5654 4301 467 0 15 599 9 5 627 1470 0 267 0 1 4 6 5 167 1 0 128 0 1 4 2 1 147 0 1 663 2 3 395 0 4 93 0 1 97 0 1 543 0 2 201 0 1 99 0 1 73 5 6 198 0 16 59 0 19 334 0 9 169 1 2 128 9 10 49 0 3 34 chain 73515 chr4 190214555 + 149040916 149041734 L1PA4 6152 + 4695 5520 23216 606 1 0 171 0 8 40 chain 5024 chr4 190214555 + 149047384 149047461 MLT2A1 477 + 414 477 85549 9 14 0 54 chain 10473 chr4 190214555 + 149067300 149067448 L1MA3 4352 + 22 167 69461 15 1 0 72 1 0 45 1 0 13 chain 10073 chr4 190214555 + 149109748 149109883 LTR24C 604 + 471 604 70245 6 1 0 78 1 0 49 chain 289685 chr4 190214555 + 149128356 149131702 L1P1 4361 + 1 4341 7137 89 0 996 50 0 2 92 0 1 9 12 11 1429 2 1 1470 1 0 154 1 0 23 2 1 12 chain 517452 chr4 190214555 + 149175568 149181988 L1PA7 6471 + 6 6469 2401 60 1 2 175 0 10 158 0 1 165 3 0 163 1 13 97 0 1 1623 0 1 157 9 0 158 0 1 36 0 1 58 0 4 41 0 13 662 0 1 60 0 1 938 0 2 339 0 1 354 0 1 37 0 1 4 1 0 276 1 0 58 11 10 167 0 3 142 0 2 302 7 8 156 chain 6134 chr4 190214555 + 149201176 149201255 MER53 195 + 0 80 80590 51 0 1 28 chain 38025 chr4 190214555 + 149226420 149226834 L1PA4 6152 + 5218 5633 36054 82 0 1 332 chain 223077 chr4 190214555 + 149229959 149232811 L1P2 5180 + 1823 5018 8957 9 3 0 218 8 10 257 0 2 386 10 11 152 1 306 15 1 0 503 17 42 174 0 1 135 35 36 120 2 12 487 0 1 4 1 0 107 5 0 6 0 5 196 chain 13164 chr4 190214555 + 149233335 149233515 L1PA6 6164 + 5978 6157 64832 14 14 13 152 chain 29603 chr4 190214555 + 149239904 149240226 AluYb8 318 + 0 318 42480 126 4 0 192 chain 82123 chr4 190214555 + 149243644 149244551 L1PA4 6152 + 4189 5095 21220 104 1 0 802 chain 27191 chr4 190214555 + 149290435 149290811 L1PA8 5853 + 5479 5852 45981 40 1 3 86 2 0 70 2 1 55 8 7 22 1 0 89 chain 5224 chr4 190214555 + 149353152 149353404 L1MA9 1812 + 1337 1608 84566 12 1 46 17 5 2 7 1 0 16 0 1 19 1 0 12 119 98 15 9 8 18 chain 25755 chr4 190214555 + 149360478 149360813 THE1A 353 + 0 353 48085 111 1 0 70 0 1 77 0 18 76 chain 126466 chr4 190214555 + 149360814 149362368 THE1A-int 1579 + 1 1579 14490 709 2 9 299 4 9 332 0 13 162 1 0 45 chain 42751 chr4 190214555 + 149389382 149389865 L1PA3long 6157 + 5671 6156 32915 336 1 2 71 0 1 75 chain 15737 chr4 190214555 + 149405383 149405566 L1PA6 6164 + 5979 6162 61366 183 chain 92053 chr4 190214555 + 149417955 149419220 L1PA10 4194 + 2424 4161 19332 92 4 14 79 13 15 32 4 5 11 1 5 24 0 5 72 1 5 341 5 6 33 0 447 223 0 1 81 0 2 195 1 0 3 3 0 35 1 0 11 chain 515609 chr4 190214555 + 149468022 149474135 L1PA5 6144 + 0 6144 2490 129 17 43 296 3 2 47 0 1 76 0 1 277 0 1 98 0 1 69 1 0 4 8 9 13 9 12 70 0 3 17 9 0 25 4 5 260 0 1 853 0 1 440 1 6 533 1 2 317 3 0 318 0 1 938 2 1 424 1 0 850 chain 109341 chr4 190214555 + 149507288 149508800 THE1B-int 1605 + 49 1605 17135 95 0 2 239 0 1 40 0 25 216 8 7 7 0 1 13 4 5 47 43 52 18 2 1 88 6 7 489 7 12 16 12 13 162 chain 18497 chr4 190214555 + 149508800 149509142 THE1B 368 + 0 368 58108 43 7 24 105 1 0 26 82 92 78 chain 194458 chr4 190214555 + 149515108 149517562 HERVL-int 5654 + 3206 5654 9906 43 2 1 43 3 0 122 2 0 83 9 8 508 4 5 72 0 2 353 0 1 140 8 0 8 0 8 160 6 0 134 3 6 42 0 10 194 1 2 25 0 1 48 15 0 113 0 1 217 0 2 96 chain 22323 chr4 190214555 + 149517562 149518006 MLT2A2 560 + 0 560 53375 60 17 19 85 83 81 56 3 112 45 0 5 38 1 0 3 0 3 9 5 1 31 0 4 8 chain 27726 chr4 190214555 + 149549233 149549531 AluYa5 310 + 0 295 45283 132 3 0 163 chain 29372 chr4 190214555 + 149626000 149626405 MLT2A1 477 + 0 398 42783 169 4 1 9 0 1 24 0 1 147 22 11 4 0 1 13 0 4 13 chain 23555 chr4 190214555 + 149648641 149648908 L1PA5 6144 + 5877 6144 51494 267 chain 51912 chr4 190214555 + 149651764 149652461 L1PA8 5853 + 5157 5853 28905 403 3 2 39 4 7 57 15 14 10 1 0 11 0 1 39 2 1 19 1 0 93 chain 165984 chr4 190214555 + 149659176 149660992 L1PA3long 6157 + 4338 6157 11333 120 0 3 1696 chain 188769 chr4 190214555 + 149666141 149668459 L1P3 4156 + 6 2335 10176 69 0 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chain 27301 chr4 190214555 + 149854282 149854613 L1PA8A 6298 + 5956 6287 45823 198 0 1 34 1 0 98 chain 46326 chr4 190214555 + 149896024 149896558 L1P1 4361 + 3636 4168 30910 244 1 0 270 2 1 17 chain 542502 chr4 190214555 + 149915526 149921549 L1PA3long 6157 + 0 6152 1175 152 14 15 257 1 0 352 0 128 3402 0 1 193 1 0 124 1 2 1526 chain 104173 chr4 190214555 + 149978334 149979648 L1PA8 5853 + 4534 5849 17800 475 0 2 240 0 5 87 0 1 220 2 1 45 2 0 72 1 0 11 19 18 25 8 7 17 4 3 86 chain 19814 chr4 190214555 + 150029453 150029816 THE1B 368 + 0 368 56656 105 31 32 39 45 42 10 7 15 65 1 0 60 chain 10699 chr4 190214555 + 150041798 150041996 MLT2B1 522 + 227 457 69047 40 7 41 24 36 34 91 chain 37090 chr4 190214555 + 150053890 150054344 MER9a1 513 + 39 513 36683 210 0 22 185 2 0 57 chain 6582 chr4 190214555 + 150054388 150054751 MER63C 923 + 44 421 79036 63 42 67 21 207 196 30 chain 28290 chr4 190214555 + 150057351 150057706 THE1A 353 + 0 353 44433 106 5 4 92 1 0 151 chain 43653 chr4 190214555 + 150122247 150122759 L1PA7 6471 + 5951 6466 32350 144 0 3 368 chain 16446 chr4 190214555 + 150168371 150168571 MER50 708 + 483 684 60454 57 3 4 140 chain 14719 chr4 190214555 + 150240604 150240762 L1PA2 6032 + 5874 6032 62646 158 chain 22484 chr4 190214555 + 150260777 150261061 AluSp 311 + 11 301 53141 25 12 18 247 chain 513421 chr4 190214555 + 150270913 150277428 L1PA7 6471 + 0 6468 2604 8 0 2 43 14 16 112 1 0 222 6 0 107 143 0 271 2 1 233 0 24 18 4 15 130 2 0 5 1 7 26 0 4 27 7 5 5 1 0 4 0 1 34 5 1 35 0 1 36 0 3 27 21 27 45 0 3 236 0 5 270 5 4 370 1 0 368 1 5 133 0 4 16 5 2 204 1 2 324 0 8 49 1 4 27 1 0 20 0 4 248 1 13 125 0 4 428 0 1 37 3 1 264 0 4 222 5 0 573 0 5 136 0 3 326 0 1 334 1 5 26 1 0 109 2 5 36 2 0 9 chain 78548 chr4 190214555 + 150291179 150292024 L1PA2 6032 + 4975 5820 21963 845 chain 4132 chr4 190214555 + 150325265 150325338 MLT1H 522 + 427 502 90557 25 10 11 25 0 1 13 chain 16108 chr4 190214555 + 150392779 150393015 L1PA8 5853 + 5623 5853 60885 38 2 0 14 16 14 51 2 1 19 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5843 10929 95 1 0 51 0 2 82 3 21 546 2 1 160 1 0 323 0 1 182 0 2 82 5 8 121 8 7 80 5 10 26 0 18 48 0 2 55 12 13 85 1 0 15 0 4 11 1 9 5 2 0 74 1 0 5 7 6 7 0 1 39 2 1 19 1 0 83 chain 37376 chr4 190214555 + 150620158 150620754 L1PB3 3668 + 3042 3611 36501 13 1 4 231 1 0 98 4 3 87 20 4 18 1 0 3 1 0 25 3 1 35 9 5 13 21 17 12 chain 76701 chr4 190214555 + 150638539 150639372 L1PA2 6032 + 5205 6031 22393 669 7 0 157 chain 3172 chr4 190214555 + 150645862 150645982 Cheshire 1285 + 1071 1189 98188 23 23 17 16 14 17 11 11 12 22 chain 163095 chr4 190214555 + 150658775 150661088 SVA_F 1814 + 10 1814 11541 99 0 20 759 97 0 9 1 0 27 128 0 23 0 15 309 318 0 543 chain 7184 chr4 190214555 + 150659634 150659730 SVA_F 1814 + 888 1001 39692 9 0 2 32 0 1 15 1 15 39 chain 9578 chr4 190214555 + 150659767 150659895 SVA_F 1814 + 1037 1115 39692 54 50 0 24 chain 13507 chr4 190214555 + 150660227 150660452 SVA_F 1814 + 1095 1271 39688 30 47 0 50 1 0 12 1 0 84 chain 2693 chr4 190214555 + 150660274 150660304 SVA_F 1814 + 1143 1173 86448 30 chain 3628 chr4 190214555 + 150660452 150660492 SVA_F 1814 + 1095 1134 68168 33 1 0 6 chain 4400 chr4 190214555 + 150660492 150660543 SVA_F 1814 + 1005 1056 73977 51 chain 136779 chr4 190214555 + 150687790 150689461 L1PA7 6471 + 4798 6462 13358 4 1 0 314 5 4 497 1 4 259 10 2 135 28 28 417 chain 28636 chr4 190214555 + 150693281 150693586 AluYa5 310 + 0 304 43894 132 1 0 172 chain 37960 chr4 190214555 + 150784225 150784841 LTR9B 643 + 5 635 36101 62 3 6 30 25 33 53 15 12 6 0 5 13 0 1 101 2 0 5 3 7 82 21 22 74 0 1 4 2 0 66 17 15 32 chain 87623 chr4 190214555 + 150838885 150839883 L1PA5 6144 + 5127 6130 20116 170 0 4 261 0 1 567 chain 59004 chr4 190214555 + 150861994 150862689 L1PA5 6144 + 5448 6144 26664 224 0 1 321 1 0 5 1 3 4 0 1 125 3 1 11 chain 8966 chr4 190214555 + 150889198 150889326 MER85 139 + 4 138 72635 88 7 10 5 0 3 28 chain 30987 chr4 190214555 + 150902404 150902788 MER51B 395 + 0 387 41136 245 2 1 80 0 4 57 chain 29709 chr4 190214555 + 150912185 150912689 MER1A 529 + 0 529 42362 15 10 30 12 33 40 73 16 28 118 0 1 12 9 5 121 21 10 64 chain 25308 chr4 190214555 + 150922287 150922759 L1PB1 5432 + 4997 5424 48772 106 13 0 11 1 0 20 1 0 5 24 19 9 2 0 52 1 0 18 1 0 43 1 0 16 1 0 4 47 34 12 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 122843 chr4 190214555 + 150953346 150954775 SVA_B 1603 + 8 1596 15049 14 0 9 7 15 2 4 1 0 100 1 2 104 0 1 376 0 80 201 0 82 606 chain 127088 chr4 190214555 + 150963149 150964838 SVA_B 1603 + 0 1602 14409 22 34 19 390 116 0 406 0 82 34 0 40 37 78 0 572 chain 5426 chr4 190214555 + 151009189 151009257 MER2 342 + 147 215 83573 68 chain 23423 chr4 190214555 + 151026229 151026505 AluSp 311 + 20 294 51718 112 2 0 162 chain 7731 chr4 190214555 + 151045740 151045836 Tigger3a 397 + 202 298 75530 96 chain 48282 chr4 190214555 + 151157272 151158030 L1MA5A 2387 + 1576 2300 30188 13 3 7 39 1 0 105 4 1 175 7 10 106 4 3 34 1 0 38 1 0 48 20 18 12 2 0 30 3 0 15 18 0 7 8 0 59 1 0 4 chain 120713 chr4 190214555 + 151189805 151191387 THE1B-int 1605 + 0 1605 15400 24 0 1 10 0 2 370 19 44 148 2 0 556 1 2 10 4 5 4 1 0 79 15 12 36 1 0 302 chain 69133 chr4 190214555 + 151212440 151213361 Tigger1 2417 + 1132 2086 24191 64 3 8 338 0 3 213 11 12 59 1 14 62 0 7 109 3 7 58 chain 30715 chr4 190214555 + 151232918 151233390 MER1A 529 + 0 529 41377 63 29 80 230 0 5 50 36 37 64 chain 73460 chr4 190214555 + 151236072 151237275 LTR12D 1347 + 0 1347 23229 159 1 15 31 38 21 10 0 17 11 18 18 14 0 36 204 42 32 100 1 0 25 137 12 314 12 242 86 chain 5304 chr4 190214555 + 151236726 151236784 LTR12D 1347 + 574 632 81680 58 chain 4304 chr4 190214555 + 151236787 151236835 LTR12D 1347 + 636 684 89475 48 chain 21463 chr4 190214555 + 151302777 151303027 L1PA5 6144 + 5887 6144 54561 19 0 6 144 0 1 87 chain 2440 chr4 190214555 + 151336237 151336351 MER3 215 - 134 168 103994 11 80 0 23 chain 4941 chr4 190214555 + 151376139 151376197 MER5A1 166 + 9 67 85929 58 chain 124342 chr4 190214555 + 151390182 151391786 SVA_C 1631 + 34 1608 14796 7 0 12 154 2 1 340 40 0 301 0 42 22 5 0 31 78 0 6 2 0 9 1 0 32 0 45 215 3 1 356 chain 2128 chr4 190214555 + 151391094 151391130 SVA_C 1631 + 437 476 105667 16 4 7 16 chain 68298 chr4 190214555 + 151394195 151395277 L1PA16 3655 + 2502 3589 24385 22 8 9 89 19 18 32 17 16 55 56 60 27 16 17 53 1 0 4 0 4 14 1 0 58 0 2 222 1 0 86 2 0 30 0 1 94 0 1 47 1 2 113 3 0 11 chain 25849 chr4 190214555 + 151402567 151402911 THE1D 372 + 0 372 47942 156 13 42 142 1 0 32 chain 221084 chr4 190214555 + 151465221 151467989 L1PA8 5853 + 3040 5847 9012 102 5 7 167 1 0 72 5 0 6 21 13 8 0 13 298 0 2 96 0 39 44 0 2 430 0 1 446 0 2 217 7 10 78 0 1 379 5 0 91 1 0 46 2 0 72 1 0 6 1 0 52 2 1 19 1 0 87 chain 262340 chr4 190214555 + 151489899 151494048 L1PBa 3878 + 111 3748 7901 14 8 4 16 75 27 42 147 0 23 2 0 286 1 0 78 9 19 15 6 8 127 3 4 13 0 1 6 1 0 115 0 3 43 5 7 18 1 0 6 0 1 54 0 3 416 0 4 150 2 0 10 2 0 170 0 1 58 8 0 458 329 0 17 3 0 129 0 1 4 1 0 31 4 6 53 2 1 54 1 3 99 6 7 21 12 13 28 0 4 269 1 3 86 5 9 41 1 2 25 5 0 498 2 1 22 2 0 10 chain 558164 chr4 190214555 + 151511300 151517459 L1PA3long 6157 + 4 6155 239 1035 14 0 2907 0 1 332 0 1 77 0 4 310 1 0 1310 0 1 173 chain 24062 chr4 190214555 + 151517739 151518374 Tigger3 1187 + 499 1116 50707 44 1 0 14 6 0 14 4 3 27 96 93 8 1 0 43 1 0 4 4 1 19 28 0 10 1 28 35 0 4 55 36 42 20 10 0 16 5 4 14 17 19 63 11 9 28 chain 36423 chr4 190214555 + 151548319 151549800 MER41A 554 + 0 546 37123 81 14 15 113 22 10 77 886 0 30 43 0 104 0 1 62 4 8 45 chain 134083 chr4 190214555 + 151551271 151552832 L1PA6 6164 + 4591 6162 13644 584 0 4 133 0 4 132 3 4 473 0 1 236 chain 14751 chr4 190214555 + 151641454 151641647 MER30 238 + 24 238 62598 83 4 0 14 0 25 92 chain 4815 chr4 190214555 + 151689606 151689683 MADE1 96 + 0 96 86620 20 6 7 9 0 18 42 chain 80360 chr4 190214555 + 151730037 151731083 L1PBa1 4058 + 602 1659 21558 16 13 12 20 3 16 112 1 0 217 0 3 307 7 4 134 10 8 5 0 2 201 chain 138606 chr4 190214555 + 151731084 151732734 SVA_C 1631 + 0 1631 13214 15 6 5 31 0 4 747 52 35 20 6 1 52 1 0 45 2 0 41 0 1 334 4 6 294 chain 2472 chr4 190214555 + 151731907 151731935 SVA_C 1631 + 851 879 64303 28 chain 224905 chr4 190214555 + 151732914 151735955 L1PB1 5432 + 2260 5370 8895 190 0 3 35 4 0 345 1 0 21 2 3 34 0 3 41 0 4 78 1 12 14 2 1 18 0 1 15 14 15 187 0 1 136 0 1 64 5 9 137 6 8 84 1 0 231 6 18 148 0 2 386 0 1 120 11 0 79 1 0 289 7 3 106 11 0 14 3 0 21 26 20 10 2 0 11 0 84 17 1 0 16 12 1 25 13 10 14 2 0 24 chain 21790 chr4 190214555 + 151736678 151737019 THE1B 368 + 0 366 54107 17 0 1 26 0 15 113 62 71 123 chain 150235 chr4 190214555 + 151747952 151749636 L1PA5 6144 + 4421 6132 12331 409 0 2 465 0 4 268 1 0 425 1 3 39 0 20 76 chain 112643 chr4 190214555 + 151946287 151947805 THE1C-int 1605 + 16 1589 16729 98 1 55 135 6 1 24 0 6 110 0 7 25 0 2 4 1 0 84 11 14 15 4 5 563 23 10 20 1 0 4 2 3 356 0 1 31 chain 30423 chr4 190214555 + 151997819 151998294 MER1A 529 + 0 518 41658 25 18 23 39 8 48 38 1 2 281 2 0 5 32 31 26 chain 61122 chr4 190214555 + 152078122 152078838 L1PA7 6471 + 5752 6470 26080 383 0 2 177 1 0 137 0 1 18 chain 4543 chr4 190214555 + 152106471 152106533 MER53 195 + 1 61 88096 31 2 0 29 chain 108802 chr4 190214555 + 152139243 152140462 L1PA2 6032 + 4807 6029 17208 1048 0 2 9 8 9 154 chain 223702 chr4 190214555 + 152141106 152143680 L1PA6 6164 + 3588 6162 8939 2574 chain 20617 chr4 190214555 + 152229922 152230205 MER1B 344 + 51 339 55612 210 18 23 55 chain 18515 chr4 190214555 + 152362528 152362849 AluSg7 307 + 0 301 58087 81 9 0 5 7 0 28 17 15 13 3 0 7 3 6 111 12 10 25 chain 61632 chr4 190214555 + 152366555 152367281 L1PA6 6164 + 5429 6160 25956 101 3 0 86 0 8 536 chain 2666 chr4 190214555 + 152477186 152477234 LTR40b 463 + 416 463 102620 22 9 8 17 chain 16182 chr4 190214555 + 152565675 152565893 MER30 238 + 0 238 60776 105 7 21 33 1 7 72 chain 2836 chr4 190214555 + 152642625 152642668 MER3 215 + 136 183 101357 5 2 0 28 0 6 8 chain 33626 chr4 190214555 + 152658027 152659046 L1MA4A 3247 + 392 3116 38982 20 0 1 66 9 6 87 21 15 102 33 31 90 1 0 15 409 2128 18 3 0 87 7 8 41 1 0 9 chain 31750 chr4 190214555 + 152664088 152664506 L1PA8 5853 + 5408 5818 40539 156 1 0 46 2 0 68 2 1 21 2 0 40 2 1 19 1 0 58 chain 4439 chr4 190214555 + 152693604 152693669 L1MA8 2339 + 2119 2183 88664 42 3 2 20 chain 120582 chr4 190214555 + 152749835 152751171 L1PA3long 6157 + 4819 6157 15433 769 0 1 409 1 2 157 chain 28617 chr4 190214555 + 152842006 152842330 LTR17 781 + 0 324 43923 324 chain 28512 chr4 190214555 + 152875757 152876111 THE1A 353 + 0 353 44105 110 1 0 243 chain 119587 chr4 190214555 + 152876111 152877648 THE1A-int 1579 + 0 1579 15595 15 10 12 185 2 23 267 3 4 470 15 14 249 0 9 45 7 8 115 1 0 9 6 22 38 7 1 93 chain 4071 chr4 190214555 + 152900967 152901072 MADE1 96 + 0 96 90943 24 43 34 38 chain 291299 chr4 190214555 + 152921818 152925012 L1PA3long 6157 + 2954 6149 7092 276 0 1 1569 1 3 506 2 0 650 1 0 89 0 1 100 chain 6132 chr4 190214555 + 152948300 152948425 L1MB3 1562 + 1299 1430 80598 23 0 5 11 0 1 12 1 0 11 26 28 31 1 0 9 chain 21751 chr4 190214555 + 153069178 153069505 MSTA 426 + 47 391 54170 156 1 0 5 12 21 57 26 34 47 0 1 23 chain 131575 chr4 190214555 + 153100026 153108701 L1PREC2 3366 + 925 3040 13862 56 5 0 249 53 56 24 0 3 102 19 21 119 3 4 145 1 0 78 22 4 472 8 12 24 0 1 48 6532 5 73 0 1 165 0 1 129 1 0 35 2 0 47 10 9 17 6 7 18 50 38 16 11 6 11 2 1 29 63 59 30 chain 44492 chr4 190214555 + 153118023 153118573 MER41A 554 + 0 553 31832 165 2 4 200 4 5 179 chain 41393 chr4 190214555 + 153139556 153140095 MLT2A2 560 + 0 560 33740 162 19 18 108 0 6 112 0 11 41 0 5 97 chain 22319 chr4 190214555 + 153198220 153198555 THE1A 353 + 0 334 53384 105 16 15 86 0 3 8 3 0 7 18 18 92 chain 42868 chr4 190214555 + 153253513 153254058 MER41A 554 + 0 554 32856 123 11 20 411 chain 38120 chr4 190214555 + 153299557 153300075 LTR10A 586 + 23 574 35973 36 0 8 7 0 1 28 0 21 20 6 5 53 10 11 68 1 2 14 1 2 148 0 1 126 chain 38600 chr4 190214555 + 153312373 153312792 L1PA3long 6157 + 5313 5732 35640 419 chain 24703 chr4 190214555 + 153314183 153314443 AluYa5 310 + 45 305 49727 260 chain 116760 chr4 190214555 + 153460763 153462101 L1PA5 6144 + 4812 6144 16095 88 0 4 704 12 4 524 2 0 8 chain 23543 chr4 190214555 + 153664894 153665254 THE1A 353 + 0 353 51517 15 2 0 32 7 8 39 1 0 17 0 2 6 17 15 167 9 4 48 chain 119454 chr4 190214555 + 153665254 153666792 THE1A-int 1579 + 0 1574 15619 446 0 10 65 1 2 70 4 14 37 6 8 4 0 1 203 1 0 441 22 22 190 1 0 5 1 15 41 chain 25567 chr4 190214555 + 153666797 153667152 THE1A 353 + 0 353 48373 15 2 0 32 1 0 4 0 2 43 1 0 15 0 2 6 8 6 228 chain 30080 chr4 190214555 + 153672903 153673285 MLT2A1 477 + 0 382 41976 69 1 2 97 4 2 11 0 1 200 chain 49672 chr4 190214555 + 153680575 153681160 L1PA6 6164 + 5567 6156 29694 26 0 2 360 7 9 192 chain 8691 chr4 190214555 + 153749860 153749970 MLT1B 390 + 280 390 73233 110 chain 18592 chr4 190214555 + 153766955 153767382 L1PB1 5432 + 5032 5422 58003 71 15 11 20 1 0 13 1 0 7 9 5 9 2 0 9 0 2 41 2 1 15 1 0 45 1 0 15 3 0 5 1 0 9 45 31 5 2 0 15 10 9 17 12 10 7 1 0 18 chain 19332 chr4 190214555 + 153779429 153779692 Tigger3c 601 + 54 531 57200 28 0 213 46 0 1 162 2 0 7 0 2 18 chain 153439 chr4 190214555 + 153818041 153819947 L1PA10 4194 + 2240 4159 12152 198 0 2 128 13 9 45 0 2 24 0 2 26 0 4 464 6 5 298 0 3 535 0 9 122 3 0 34 1 0 9 chain 110802 chr4 190214555 + 153826619 153827966 L1PA7 6471 + 4708 6056 16968 241 1 0 24 0 1 358 0 5 201 0 5 77 12 8 181 0 3 146 9 1 97 chain 2843 chr4 190214555 + 153833471 153833504 MER57B2 428 + 395 428 101285 33 chain 3928 chr4 190214555 + 153868591 153868636 THE1B-int 1605 + 1549 1594 91931 45 chain 299845 chr4 190214555 + 153955925 153959324 L1PA5 6144 + 2743 6144 6836 667 0 1 2394 0 1 338 chain 14134 chr4 190214555 + 153965435 153965612 L1PA5 6144 + 5972 6144 63399 166 5 0 6 chain 6933 chr4 190214555 + 153976128 153976269 MSTA 426 + 272 426 77836 23 27 42 52 9 7 30 chain 3074 chr4 190214555 + 154013156 154013193 MLT2D 439 + 402 439 99035 37 chain 14386 chr4 190214555 + 154104669 154104833 L1PA5 6144 + 4456 4620 63054 164 chain 33517 chr4 190214555 + 154153308 154153746 MER57A1 433 + 0 433 39071 134 18 9 36 1 0 103 0 1 101 0 4 45 chain 46076 chr4 190214555 + 154186430 154186982 MER41A 554 + 1 554 31027 30 1 0 490 0 2 31 chain 33989 chr4 190214555 + 154272978 154273595 L1PB1 5432 + 4847 5423 38712 256 1 2 9 13 0 23 1 0 7 1 0 14 5 1 9 2 0 52 19 17 44 1 0 14 13 0 8 4 8 13 27 22 24 1 0 14 8 7 13 1 0 10 1 0 9 chain 29193 chr4 190214555 + 154357319 154357706 MER83 447 + 4 404 43055 237 6 20 118 1 0 25 chain 9740 chr4 190214555 + 154402648 154402777 THE1D-int 1627 + 1478 1610 70959 112 1 4 16 chain 8855 chr4 190214555 + 154426797 154426944 L1MA3 4352 + 4190 4328 72851 45 4 0 22 3 1 24 1 0 6 1 0 25 2 1 14 chain 3636 chr4 190214555 + 154453450 154453675 LTR16B1 483 + 65 318 94131 24 164 191 24 0 1 13 chain 3433 chr4 190214555 + 154592502 154592558 MER53 195 - 27 84 95797 35 7 8 14 chain 9626 chr4 190214555 + 154625530 154625674 MLT2A2 560 + 418 552 71207 41 1 2 55 12 1 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155804528 L1PA8 5853 + 5586 5853 56926 24 2 0 72 1 0 5 9 8 40 7 6 19 1 0 93 chain 191330 chr4 190214555 + 155847190 155850113 MER4-int 2692 + 73 2680 10052 26 2 0 15 2 1 5 4 0 159 363 44 273 0 1 118 1 2 8 6 1 38 0 4 169 0 1 62 6 8 97 1 0 281 4 20 28 1 0 31 2 3 19 0 14 250 3 5 134 1 0 223 38 4 158 0 2 135 1 0 51 1 0 101 0 10 106 chain 439010 chr4 190214555 + 155892338 155897347 L1PA5 6144 + 731 6086 4587 235 4 348 861 0 2 2135 1 0 996 0 1 777 chain 41415 chr4 190214555 + 155928878 155929389 MER9a3 513 + 2 513 33728 20 0 1 132 2 1 48 13 12 218 0 1 78 chain 27069 chr4 190214555 + 155933088 155933428 THE1A 353 + 0 341 46170 110 1 0 185 0 2 44 chain 123608 chr4 190214555 + 155933438 155934980 THE1A-int 1579 + 0 1579 14915 84 2 1 114 3 0 43 0 1 195 2 1 335 0 23 210 3 19 143 0 1 112 0 1 296 chain 27969 chr4 190214555 + 155934980 155935333 THE1A 353 + 0 353 44920 73 0 1 26 1 0 9 2 1 69 0 1 173 chain 12863 chr4 190214555 + 155957569 155957746 L1PB2 3958 + 3664 3838 65320 6 0 1 8 1 0 70 2 0 25 2 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156234142 L1PA7 6471 + 5506 5979 35865 117 0 4 177 0 8 161 0 1 5 chain 36438 chr4 190214555 + 156262200 156262665 MER4A1 472 + 0 471 37117 173 7 13 285 chain 538100 chr4 190214555 + 156367269 156373292 L1PA3long 6157 + 0 6157 1447 153 0 1 188 0 1 141 4 0 293 1 129 180 0 3 312 0 5 1769 1 2 241 4 0 1710 0 1 694 0 1 190 0 1 142 chain 19357 chr4 190214555 + 156375560 156375790 L1PA7 6471 + 6241 6470 57173 216 1 0 13 chain 43533 chr4 190214555 + 156393134 156393647 MER9a2 513 + 0 513 32427 513 chain 35950 chr4 190214555 + 156467726 156468126 L1P1 4361 + 3290 3690 37440 400 chain 25464 chr4 190214555 + 156488653 156489011 MLT2A1 477 + 0 356 48534 168 7 4 121 0 1 4 9 8 29 1 2 19 chain 219705 chr4 190214555 + 156489141 156491894 HERVL-int 5654 + 0 5654 9051 654 1 2 19 0 1 26 5 6 219 8 21 226 17 19 1064 0 1 89 1 0 206 0 2880 6 0 4 131 2 1 79 chain 30095 chr4 190214555 + 156491896 156492301 MLT2A1 477 + 2 460 41959 166 1 5 209 14 63 15 chain 460638 chr4 190214555 + 156505471 156511983 L1PA8A 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0 6 0 1 13 2 0 15 7 3 72 23 16 126 3 0 89 0 8 30 3 0 128 1 2 69 1 0 7 0 1 16 2 0 16 1 0 70 2 1 14 7 5 14 1 0 6 9 57 25 1 0 5 6 3 119 5 4 27 2 0 22 0 1 8 35 29 7 6 0 18 chain 538104 chr4 190214555 + 164141809 164147832 L1PA3long 6157 + 0 6157 1446 151 1 2 187 9 9 419 8 136 1420 0 2 1620 0 1 1533 0 1 431 0 1 244 chain 56259 chr4 190214555 + 164152350 164153121 MER4E 760 + 0 760 27499 17 0 1 146 1 0 201 0 1 27 1 2 36 6 5 92 5 0 7 9 0 101 6 8 116 chain 546352 chr4 190214555 + 164241613 164247620 L1PA2 6032 + 0 6032 949 255 2 1 1580 0 21 513 0 1 1339 0 9 1267 6 0 293 0 1 752 chain 41945 chr4 190214555 + 164257893 164258391 L1PA7 6471 + 5951 6454 33393 248 0 4 94 1 2 155 chain 3516 chr4 190214555 + 164326914 164326957 MIR 256 + 135 178 95127 43 chain 5700 chr4 190214555 + 164341360 164341468 L1MA9 1812 + 126 237 82339 4 0 1 58 29 31 17 chain 555008 chr4 190214555 + 164350749 164356776 L1PA2 6032 + 0 6032 410 364 0 1 514 0 1 4964 0 3 185 chain 59228 chr4 190214555 + 164393177 164393855 L1PA5 6144 + 5461 6144 26596 659 0 5 19 chain 25190 chr4 190214555 + 164397470 164397839 L1PA8 5853 + 5491 5853 48965 73 1 0 37 5 2 4 0 1 71 1 0 12 14 13 36 2 1 19 6 5 88 chain 27259 chr4 190214555 + 164405094 164405435 L1PA7 6471 + 6121 6461 45884 193 5 4 143 chain 13894 chr4 190214555 + 164415647 164415833 L1PA8 5853 + 5458 5640 63745 59 2 0 17 4 5 25 1 0 44 2 0 32 chain 22775 chr4 190214555 + 164460505 164460866 THE1B 368 + 2 358 52712 167 1 0 22 21 26 59 15 7 23 14 13 39 chain 7073 chr4 190214555 + 164506410 164506491 L1PA7 6471 + 6386 6467 77358 81 chain 334321 chr4 190214555 + 164544663 164548412 L1PA4 6152 + 1424 5185 6152 1011 4 16 805 0 1 4 1 0 1924 chain 474795 chr4 190214555 + 164563138 164568620 L1PA4 6152 + 3 5520 3750 368 20 13 613 0 36 202 0 1 8 2 0 17 0 1 1227 0 1 48 0 1 1812 0 4 280 1 0 484 0 1 400 chain 149065 chr4 190214555 + 164585627 164587515 L1P1 4361 + 4 1904 12415 277 0 1 394 0 3 179 0 1 14 0 1 248 18 20 8 0 3 110 6 7 634 chain 80451 chr4 190214555 + 164588068 164589014 L1PA5 6144 + 5200 6142 21535 781 1 6 5 5 0 36 0 1 106 5 0 7 chain 503088 chr4 190214555 + 164630154 164636528 L1PA7 6471 + 3 6336 3028 66 0 13 321 4 0 752 5 1 264 0 11 327 0 2 294 0 2 122 0 1 63 3 0 84 0 1 305 2 0 640 5 6 208 1 0 327 0 4 19 12 4 167 1 2 194 0 3 237 10 6 151 0 1 382 1 2 72 72 5 86 10 25 23 2 1 35 0 1 356 21 32 342 10 0 5 7 0 169 0 2 197 chain 454107 chr4 190214555 + 164649597 164672244 L1PA5 6144 + 7 6131 4285 82 0 525 832 9 6 49 4 0 1359 0 1 647 0 1 173 1 0 280 13 0 858 17039 0 203 0 9 962 0 1 136 chain 25170 chr4 190214555 + 164657840 164658152 LTR17 781 + 0 326 49004 44 0 10 248 0 4 20 chain 13152 chr4 190214555 + 164662647 164662993 LTR14A 344 + 0 344 64849 5 0 1 42 19 5 25 19 5 15 76 123 11 19 0 14 3 1 5 1 0 92 chain 183623 chr4 190214555 + 164667408 164669681 L1PA5 6144 + 2 3500 10403 119 0 14 19 12 24 570 15 16 45 17 0 13 0 17 131 0 2 197 9 0 1011 0 1205 115 chain 14402 chr4 190214555 + 164669681 164669852 L1PA5 6144 + 3502 3673 63030 171 chain 78988 chr4 190214555 + 164669857 164670774 L1PA5 6144 + 3676 4652 21877 661 0 58 112 1 2 143 chain 75097 chr4 190214555 + 164674762 164675744 L1P2 5180 + 1878 2846 22820 180 13 14 168 2 0 70 21 9 66 2 1 460 chain 163236 chr4 190214555 + 164675925 164677986 L1P2 5180 + 2 2093 11533 141 0 11 55 0 1 37 20 19 46 11 10 185 1 0 8 1 0 272 7 5 141 0 25 351 1 0 784 chain 11958 chr4 190214555 + 164685459 164685624 L1PA8 5853 + 5690 5853 66904 50 2 1 16 5 4 92 chain 343978 chr4 190214555 + 164688411 164692541 HERVL-int 5654 + 68 4258 5997 494 0 1 314 3 17 374 0 1 111 5 0 56 0 44 1091 0 1 139 13 10 58 0 5 640 0 1 409 0 1 423 chain 73929 chr4 190214555 + 164740384 164742211 MER11A 1151 + 6 1151 23111 79 0 91 116 10 6 135 10 11 94 0 1 133 17 18 145 17 48 37 0 1 46 1 0 16 0 1 75 814 10 82 chain 71259 chr4 190214555 + 164741317 164742102 L1PA4 6152 + 5355 6141 23709 683 0 1 102 chain 88383 chr4 190214555 + 164749828 164751055 HERVK11-int 2540 + 1044 2237 19969 21 2 0 65 1 0 43 28 24 10 19 19 27 12 1 35 20 0 120 0 4 73 0 1 99 0 1 143 6 1 104 1 0 189 1 0 78 5 9 99 0 1 26 chain 74863 chr4 190214555 + 164752249 164753249 MER11A 1151 + 8 1151 22879 47 0 99 76 5 9 53 10 6 145 0 1 94 5 6 84 0 5 51 5 6 80 8 9 42 8 41 56 0 1 64 0 1 167 chain 8505 chr4 190214555 + 164769411 164769501 L1PA4 6152 + 5808 5898 73667 90 chain 21809 chr4 190214555 + 164769502 164769744 L1PA4 6152 + 5898 6140 54092 242 chain 29571 chr4 190214555 + 164838127 164838437 AluYg6 310 + 0 310 42521 310 chain 183984 chr4 190214555 + 164861311 164863362 L1PA4 6152 + 3464 5515 10386 92 0 2 1090 2 0 867 chain 10279 chr4 190214555 + 164913279 164913389 L1PA5 6144 + 5884 5994 69851 110 chain 10511 chr4 190214555 + 164913390 164913528 L1PA5 6144 + 5997 6128 69394 34 1 0 25 0 1 7 7 0 64 chain 79793 chr4 190214555 + 164941759 164943238 L1PA8 5853 + 4615 5760 21666 128 11 5 129 18 6 62 0 1 63 0 2 159 19 25 88 11 9 191 319 1 80 1 0 46 2 0 50 0 1 16 13 11 47 7 6 19 chain 88551 chr4 190214555 + 164975369 164976382 LTR5A 1029 + 0 1029 19932 14 0 2 22 2 0 109 0 13 274 0 1 516 0 2 76 chain 22542 chr4 190214555 + 164980564 164980945 L1PA8 5853 + 5488 5853 53054 33 0 2 5 23 8 28 1 0 45 2 0 54 13 16 14 1 0 4 1 0 11 1 2 30 2 1 17 4 3 92 chain 78400 chr4 190214555 + 164990382 164991350 LTR5_Hs 974 + 0 974 22002 288 0 1 105 0 1 67 1 0 180 2 0 7 6 8 162 8 15 37 2 0 103 chain 79583 chr4 190214555 + 164995687 164996655 LTR5_Hs 974 + 0 974 21725 19 0 2 356 0 1 443 15 20 30 2 0 103 chain 296832 chr4 190214555 + 164996671 165001078 HERVK-int 6823 + 19 6520 6930 23 1 0 20 1 0 8 1 0 30 1 0 21 1 0 12 2 0 318 5 4 61 2 0 143 3 1 28 2 1 18 1 0 215 15 5 92 1 0 437 1 0 17 0 1 353 3 1 7 4 0 87 0 15 738 0 2255 19 1 0 55 316 0 498 0 288 58 1 0 36 1 0 46 2 0 78 3 2 43 0 4 4 1 0 8 1 0 3 1 0 74 3 1 7 1 0 24 17 11 11 1 0 20 2 0 3 1 0 8 1 0 5 173 101 9 2 0 12 1 0 14 3 1 13 7 6 22 18 13 10 10 6 10 11 5 7 1 0 8 1 0 5 1 0 26 1 0 4 1 0 12 chain 26358 chr4 190214555 + 164999426 164999734 AluSp 311 + 0 311 47185 91 0 3 217 chain 80182 chr4 190214555 + 165001952 165002916 LTR5_Hs 974 + 0 974 21593 19 0 2 196 0 2 510 0 3 89 17 22 28 2 0 103 chain 26633 chr4 190214555 + 165044547 165044851 AluY 311 + 8 308 46786 115 2 0 4 2 0 181 chain 6524 chr4 190214555 + 165047363 165047469 MER30 238 + 125 229 79255 5 3 0 9 1 0 11 4 3 37 0 3 36 chain 43837 chr4 190214555 + 165050962 165051499 MER41A 554 + 1 541 32226 86 10 11 303 0 1 24 0 1 114 chain 4229 chr4 190214555 + 165088682 165088731 MER21C 908 + 40 89 89946 49 chain 4345 chr4 190214555 + 165117380 165117431 MER39 703 + 601 652 89210 51 chain 154541 chr4 190214555 + 165165548 165167409 L1PA7 6471 + 4572 6470 12084 102 0 4 943 0 3 76 2 3 70 1 14 251 0 22 146 8 5 15 3 1 82 1 0 161 chain 6045 chr4 190214555 + 165252579 165252651 U4 144 + 0 72 80904 72 chain 23314 chr4 190214555 + 165273442 165273794 THE1B 368 + 0 367 51909 44 35 50 14 1 0 31 0 4 29 2 1 27 2 0 167 chain 22210 chr4 190214555 + 165353140 165353431 L1PA8 5853 + 5569 5853 53536 41 2 0 68 2 1 14 2 0 50 1 0 17 1 0 93 chain 23673 chr4 190214555 + 165479737 165480008 AluY 311 + 28 299 51321 271 chain 25903 chr4 190214555 + 165546876 165547152 AluYa5 310 + 34 310 47864 276 chain 143083 chr4 190214555 + 165570528 165572288 L1PA8A 6298 + 4524 6287 12853 286 0 1 28 0 5 446 4 3 5 0 1 127 0 1 67 0 1 633 7 8 50 6 0 101 chain 26889 chr4 190214555 + 165584022 165584321 L1PA5 6144 + 5844 6144 46425 152 0 1 147 chain 22756 chr4 190214555 + 165618890 165619188 L1PA10 4194 + 3823 4150 52745 168 3 35 89 4 1 34 chain 10554 chr4 190214555 + 165634228 165634367 L1PBa 3878 + 805 945 69314 95 7 8 37 chain 264175 chr4 190214555 + 165635959 165639769 L1PBa 3878 + 216 3733 7849 21 2 0 91 0 7 187 1 0 95 3 2 151 0 1 54 1 2 157 1 3 114 1 13 83 8 9 307 0 1 7 1 0 92 2 0 7 5 1 260 0 5 21 4 5 235 4 3 109 0 1 131 0 1 11 319 0 192 0 1 110 3 1 6 1 0 191 2 0 5 0 2 278 0 7 14 0 1 10 3 0 203 1 0 275 0 4 12 2 1 17 chain 30655 chr4 190214555 + 165640733 165641082 L1P1 4361 + 2948 3295 41416 74 1 0 149 1 0 124 chain 52513 chr4 190214555 + 165643718 165644325 L1PA4 6152 + 5535 6152 28727 282 1 2 73 0 1 221 0 1 24 0 7 6 chain 39182 chr4 190214555 + 165693163 165693664 L1PA4 6152 + 5704 6151 35225 266 55 1 180 chain 44130 chr4 190214555 + 165693666 165694290 Tigger3b 1229 + 332 958 32065 29 0 4 184 5 4 28 0 2 7 1 0 21 5 9 8 1 0 69 5 4 69 1 0 5 4 1 182 chain 40618 chr4 190214555 + 165730696 165731242 L1PA8 5853 + 5288 5837 34207 34 0 2 240 1 8 38 2 0 68 1 0 9 7 6 51 2 1 15 1 0 77 chain 27707 chr4 190214555 + 165808481 165808835 THE1A 353 + 0 353 45304 109 2 1 243 chain 31652 chr4 190214555 + 165816179 165816623 L1PA11 4918 + 3911 4348 40622 276 2 0 25 10 6 50 1 5 56 1 0 2 4 0 17 chain 5765 chr4 190214555 + 165816643 165816746 L1PB1 5432 + 5308 5404 82057 19 8 5 14 2 0 24 1 0 21 1 0 13 chain 6143 chr4 190214555 + 165818626 165818718 L1PB1 5432 + 5332 5419 80557 14 2 0 24 1 0 21 1 0 13 1 0 15 chain 533962 chr4 190214555 + 165818904 165825031 L1PA5 6144 + 3 6142 1659 135 0 2 1112 0 5 682 1 0 624 0 1 457 1 0 79 0 1 57 1 0 135 4 1 733 0 4 13 0 1 109 1 2 5 1 0 878 0 1 428 2 4 150 0 1 519 chain 6073 chr4 190214555 + 165961863 165961943 L1PA16 3655 + 1493 1574 80827 73 0 1 7 chain 65126 chr4 190214555 + 166063224 166063996 L1PA5 6144 + 5367 6135 25160 597 5 0 18 7 14 8 7 0 90 0 1 40 chain 61419 chr4 190214555 + 166149008 166149906 THE1C-int 1605 + 27 910 26006 45 0 1 57 0 56 252 89 18 215 1 0 14 8 9 4 1 0 212 chain 8355 chr4 190214555 + 166149906 166150010 THE1C 375 + 271 375 73833 104 chain 23814 chr4 190214555 + 166151803 166152108 AluYa5 310 + 10 298 51078 40 4 0 236 13 0 12 chain 3453 chr4 190214555 + 166160582 166160620 MADE1 96 - 58 96 95616 38 chain 9371 chr4 190214555 + 166184821 166184933 MLT1A0 366 + 253 365 71768 112 chain 6359 chr4 190214555 + 166190063 166190140 THE1D-int 1627 + 162 239 79813 77 chain 117870 chr4 190214555 + 166190999 166192562 THE1B-int 1605 + 0 1598 15907 32 0 1 4 2 1 394 0 25 196 19 23 414 32 33 396 1 6 73 chain 257947 chr4 190214555 + 166199213 166203091 MER61-int 3695 + 28 3649 8026 8 9 0 10 1 0 74 260 40 112 1 0 44 3 7 18 20 0 69 1 2 95 1 4 120 0 1 48 0 1 165 12 17 148 0 1 234 2 3 47 27 1 67 0 1 67 1 0 187 1 6 117 45 46 316 2 1 23 1 5 51 1 4 197 10 0 39 0 2 5 5 4 25 0 1 132 1 0 35 6 7 142 0 1 83 1 0 39 2 0 84 1 0 161 0 1 4 4 2 43 0 3 99 5 6 51 2 0 235 3 2 10 6 8 40 chain 143615 chr4 190214555 + 166237016 166238613 L1PA3long 6157 + 2667 4264 12793 1597 chain 13205 chr4 190214555 + 166250918 166251142 L1PA8 5853 + 5608 5853 64768 66 44 67 19 1 0 87 1 0 6 chain 473583 chr4 190214555 + 166266020 166271588 L1HS 6032 + 620 6021 3778 151 135 7 553 0 4 1384 0 1 202 0 1 913 1 0 386 0 4 679 2 0 133 0 1 918 47 0 64 chain 49198 chr4 190214555 + 166274061 166274625 LTR14C 587 + 0 587 29869 239 0 23 325 chain 25895 chr4 190214555 + 166303365 166303742 L1PB2 3958 + 110 477 47875 28 2 0 35 3 0 7 1 0 47 1 0 3 2 0 25 6 5 217 chain 3629 chr4 190214555 + 166321505 166321548 MADE1 96 + 49 92 94190 43 chain 8628 chr4 190214555 + 166347725 166347832 MER11B 1079 + 942 1049 73393 107 chain 22124 chr4 190214555 + 166402736 166403016 AluY 311 + 0 287 53664 42 6 7 15 0 5 57 0 1 160 chain 116856 chr4 190214555 + 166453995 166455519 THE1B-int 1605 + 45 1605 16075 247 6 4 136 24 49 114 6 5 236 5 19 750 chain 26530 chr4 190214555 + 166455519 166455874 THE1B 368 + 0 368 46932 44 6 21 107 4 3 8 0 1 8 2 0 176 chain 551098 chr4 190214555 + 166463312 166469345 L1PA2 6032 + 1 6032 667 525 4 0 3166 0 1 536 0 4 1779 1 0 14 2 0 6 chain 317881 chr4 190214555 + 166521100 166524772 HERVH-int 3825 + 0 3824 6448 479 0 114 10 26 57 96 6 9 13 1 2 128 7 8 1846 1 0 666 0 1 81 2 4 310 chain 28441 chr4 190214555 + 166526029 166526424 LTR7 482 + 0 476 44205 69 8 46 109 9 41 49 0 10 41 1 2 109 chain 23273 chr4 190214555 + 166532759 166533097 THE1B 368 + 0 368 51972 172 1 0 28 18 50 56 7 6 56 chain 24739 chr4 190214555 + 166554501 166554775 L1PA2 6032 + 4902 5176 49670 274 chain 78326 chr4 190214555 + 166554775 166555627 L1PA2 6032 + 5180 6032 22023 852 chain 566274 chr4 190214555 + 166569976 166576007 L1HS 6032 + 0 6032 57 74 0 1 5957 chain 39626 chr4 190214555 + 166716124 166716575 LTR7 482 + 0 482 34940 263 1 32 187 chain 301594 chr4 190214555 + 166716577 166720344 HERVH-int 3825 + 0 3825 6788 272 0 4 56 0 1 199 5 0 38 1 0 10 1 0 24 28 0 5 86 0 21 4 1 7 20 0 17 4 3 62 21 0 9 2 1 49 1 0 444 15 0 462 4 31 732 3 0 672 8 218 172 2 4 311 chain 39975 chr4 190214555 + 166721603 166722054 LTR7 482 + 0 482 34674 264 0 31 187 chain 510629 chr4 190214555 + 166743489 166749647 L1PA5 6144 + 1 6144 2741 112 13 27 797 36 11 224 25 16 245 2 1 856 26 28 424 4 0 129 0 7 284 1 2 2123 1 0 88 0 1 768 chain 564353 chr4 190214555 + 166755899 166761908 L1HS 6032 + 25 6032 106 49 0 1 601 4 0 4316 0 1 1039 chain 17248 chr4 190214555 + 166825410 166825658 L1PB2 3958 + 3580 3825 59527 37 1 0 62 8 7 67 2 0 22 1 0 43 0 2 5 chain 102655 chr4 190214555 + 166850455 166851634 L1HS 6032 + 2 1180 17988 254 1 0 924 chain 61449 chr4 190214555 + 166851634 166852305 L1PA3long 6157 + 5484 6155 25998 671 chain 273309 chr4 190214555 + 166862886 166866466 L1P2 5180 + 1617 5178 7626 337 0 1 32 31 5 280 5 4 51 1 0 67 5 9 369 14 18 271 5 4 134 10 11 6 1 0 76 0 1 229 4 3 317 0 2 234 0 1 93 16 17 509 1 2 25 2 1 361 1 0 49 1 0 38 1 0 4 chain 391145 chr4 190214555 + 166949748 166954086 L1PA3long 6157 + 1805 6149 5303 674 0 1 779 0 4 2740 8 9 137 chain 433878 chr4 190214555 + 167055313 167060161 L1PA3long 6157 + 0 6157 4689 440 1 2 522 0 18 1789 4 5 21 0 1288 1900 0 1 171 chain 21826 chr4 190214555 + 167091995 167092265 L1P3 4156 + 0 269 54071 251 2 1 17 chain 142429 chr4 190214555 + 167145640 167147379 L1P2 5180 + 1823 3566 12898 129 1 0 959 5 6 444 1 2 108 5 8 87 chain 5753 chr4 190214555 + 167155832 167155985 L1PA8 5853 + 5701 5853 82115 39 24 22 26 35 0 10 3 39 16 chain 173534 chr4 190214555 + 167159465 167161418 L1PA4 6152 + 3563 5519 10924 1120 0 1 203 0 1 109 4 0 190 0 1 116 0 4 211 chain 35782 chr4 190214555 + 167165124 167165552 L1PA8 5853 + 4758 5189 37542 249 0 2 168 0 1 11 chain 28645 chr4 190214555 + 167211082 167211452 THE1B-int 1605 + 1234 1605 43876 74 2 3 151 1 0 5 0 1 137 chain 20540 chr4 190214555 + 167211452 167211795 THE1B 368 + 0 368 55731 44 9 24 109 1 0 21 35 45 21 5 6 98 chain 26050 chr4 190214555 + 167262100 167262380 L1PA3long 6157 + 5019 5299 47660 280 chain 78389 chr4 190214555 + 167262387 167263244 L1PA3long 6157 + 5300 6157 22006 857 chain 41698 chr4 190214555 + 167268180 167268729 MER41A 554 + 0 554 33552 87 5 6 400 4 8 53 chain 295059 chr4 190214555 + 167270309 167273594 L1PA3long 6157 + 2864 6157 6984 609 0 1 472 0 1 629 0 3 18 0 1 788 0 2 769 chain 3453 chr4 190214555 + 167310134 167310172 L1ME3A 1206 + 451 489 95623 38 chain 40860 chr4 190214555 + 167443109 167443657 MLT2A2 560 + 0 560 34054 194 1 4 192 14 23 147 chain 34471 chr4 190214555 + 167480108 167480544 THE1C-int 1605 + 1168 1604 38378 436 chain 66232 chr4 190214555 + 167490042 167490816 L1PA5 6144 + 5367 6144 24900 116 0 3 423 0 1 197 1 0 37 chain 91237 chr4 190214555 + 167494967 167496060 MER11C 1089 + 0 1073 19458 592 7 8 16 0 2 95 0 3 116 26 0 241 chain 1203 chr4 190214555 + 167538522 167538700 L1PB1 5432 + 5118 5281 67365 20 1 0 8 20 15 6 2 0 53 2 1 16 6 0 44 chain 95719 chr4 190214555 + 167538708 167539978 L1PA8 5853 + 4538 5787 18807 42 9 13 266 0 1 146 1 3 408 40 0 141 8 7 38 7 5 70 2 1 57 0 17 7 2 1 26 chain 473 chr4 190214555 + 167540186 167540256 L1PB1 5432 + 5332 5398 67365 14 2 0 24 1 0 21 1 0 7 chain 43963 chr4 190214555 + 167574937 167575499 LTR22 571 + 0 571 32153 37 0 11 34 1 0 170 2 1 318 chain 6450 chr4 190214555 + 167582104 167582233 LTR12C 1709 + 1118 1208 79517 41 0 2 27 41 0 20 chain 162114 chr4 190214555 + 167630022 167631955 L1PA7 6471 + 4538 6468 11605 1083 1 0 585 8 7 94 2 1 160 chain 9319 chr4 190214555 + 167662998 167663154 7SK 245 + 13 240 71870 92 33 104 31 chain 162687 chr4 190214555 + 167708781 167710572 L1PA3long 6157 + 4351 6149 11564 397 0 3 1351 0 4 43 chain 24948 chr4 190214555 + 167729662 167730297 THE1B 368 + 0 348 49361 44 0 15 92 299 0 17 1 0 23 3 1 156 chain 15653 chr4 190214555 + 167770612 167770784 L1PA5 6144 + 5962 6134 61462 172 chain 535414 chr4 190214555 + 167857883 167863903 L1PA3long 6157 + 0 6156 1600 36 0 1 28 5 0 65 1 15 9 13 0 595 0 1 22 4 132 1303 0 2 395 8 0 2512 0 15 175 0 1 849 chain 300234 chr4 190214555 + 167876711 167880360 HERVH-int 3825 + 0 3824 6822 20 15 16 239 1 0 58 1 0 155 0 58 24 1 0 10 1 0 24 28 0 15 1 0 12 29 25 41 1 0 57 2 1 24 2 1 60 0 3 383 15 0 460 3 9 165 0 19 334 1 0 88 0 1 329 0 143 446 1 0 234 0 1 369 chain 2210 chr4 190214555 + 167877316 167877340 HERVH-int 3825 + 669 693 96014 24 chain 135077 chr4 190214555 + 167894634 167897060 L1PBa1 4058 + 11 3028 13538 25 1 0 11 4 2 6 1 0 110 0 1 97 0 1 106 0 1 57 2 0 70 2 1 51 15 15 53 14 13 278 47 19 66 2 3 404 486 1 128 4 5 110 9 7 10 1 0 86 0 4 48 0 1 40 13 1120 18 7 5 44 chain 138898 chr4 190214555 + 167911937 167913524 L1PA5 6144 + 3677 5277 13200 402 0 1 261 0 4 287 2 8 211 0 1 375 0 1 49 chain 30879 chr4 190214555 + 167922850 167923315 LTR7 482 + 0 482 41239 69 4 42 18 51 0 96 0 1 4 0 31 90 2 0 131 chain 287728 chr4 190214555 + 167923317 167926930 HERVH-int 3825 + 0 3825 7209 212 0 11 280 9 11 16 1 0 11 1 0 4 0 1 23 7 6 5 1 0 10 4 0 13 7 1 15 0 37 42 2 1 18 77 12 25 1 2 7 0 2 14 0 3 242 1 4 168 0 3 28 15 0 458 4 31 284 0 4 299 0 1 766 12 14 36 8 218 487 chain 2663 chr4 190214555 + 167923998 167924057 HERVH-int 3825 + 635 691 89860 9 21 18 29 chain 30005 chr4 190214555 + 167928213 167928626 LTR7 482 + 0 482 42047 69 8 46 110 5 36 76 1 2 5 1 0 3 2 0 39 0 2 94 chain 49028 chr4 190214555 + 167930714 167931328 PABL_A 660 + 0 660 29942 66 1 0 18 0 9 82 0 39 50 6 5 391 chain 36386 chr4 190214555 + 167932288 167932756 MER4A1 472 + 0 472 37149 28 5 9 435 chain 8596 chr4 190214555 + 167976740 167976946 L1PA13 3608 + 3216 3488 73458 24 3 1 32 2 0 5 0 1 16 0 1 16 27 100 18 25 21 14 1 0 23 chain 6537 chr4 190214555 + 167984831 167984905 L1P1 4361 + 2795 2869 79209 74 chain 27691 chr4 190214555 + 168047495 168047850 THE1A 353 + 0 353 45329 109 12 11 180 1 0 53 chain 121183 chr4 190214555 + 168047850 168049714 THE1A-int 1579 + 0 1574 15319 15 0 2 247 309 0 203 0 13 73 2 0 279 0 1 303 0 3 27 5 6 135 16 16 155 0 1 95 chain 298856 chr4 190214555 + 168066906 168070414 L1PA6 6164 + 2645 6162 6866 458 0 1 79 1 2 4 0 1 506 0 1 257 0 1 413 0 4 277 1 0 409 6 7 250 1 0 89 4 6 513 1 0 239 chain 14505 chr4 190214555 + 168153273 168153510 MER107 203 + 0 203 62892 13 0 1 145 44 9 35 chain 6594 chr4 190214555 + 168192783 168192861 LTR12F 595 + 0 79 78994 32 0 1 46 chain 28149 chr4 190214555 + 168194204 168194660 LOR1b 457 + 0 445 44638 24 8 18 102 1 0 15 31 0 19 19 28 85 4 6 148 chain 87039 chr4 190214555 + 168214438 168215845 L1P3 4156 + 2738 3834 20228 65 7 11 643 0 1 3 5 0 39 308 0 24 1 0 41 3 0 41 3 4 224 chain 49575 chr4 190214555 + 168239923 168240551 L1PA10 4194 + 3534 4161 29741 177 0 6 60 9 7 292 1 0 23 1 0 17 3 0 45 chain 28158 chr4 190214555 + 168242846 168243218 THE1B 368 + 2 368 44619 170 1 0 8 0 1 4 1 0 7 4 0 26 1 0 150 chain 3982 chr4 190214555 + 168245032 168245081 L1MB2 1706 + 1644 1694 91569 42 0 1 7 chain 17724 chr4 190214555 + 168304003 168304361 Tigger3b 1229 + 201 602 58984 48 0 1 8 90 90 13 0 1 118 1 0 50 17 59 13 chain 250698 chr4 190214555 + 168344060 168347008 L1PA5 6144 + 3192 6144 8215 51 0 3 345 0 1 1537 9 9 235 0 1 56 2 0 375 0 1 181 29 29 128 chain 123085 chr4 190214555 + 168367542 168369115 THE1B-int 1605 + 0 1600 15009 269 0 1 162 0 25 312 1 0 4 19 20 525 4 5 277 chain 8089 chr4 190214555 + 168430263 168430364 MSTA 426 + 325 426 74659 101 chain 19750 chr4 190214555 + 168431498 168431712 L1PA3long 6157 + 5943 6157 56731 214 chain 552136 chr4 190214555 + 168441989 168448038 L1PA2 6032 + 0 6029 599 257 1 0 171 23 0 3132 0 1 4 1 0 2004 1 6 195 1 0 259 chain 35420 chr4 190214555 + 168449244 168449628 L1HS 6032 + 5642 6032 37766 8 0 6 376 chain 28043 chr4 190214555 + 168578256 168578632 THE1C 375 + 0 375 44793 190 12 11 90 0 1 58 1 0 25 chain 30650 chr4 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chain 30507 chr4 190214555 + 169327208 169327642 MLT2A1 477 + 0 477 41559 16 0 2 68 0 1 73 13 10 12 0 1 127 0 10 65 10 0 10 3 45 37 chain 35262 chr4 190214555 + 169330800 169331295 LTR10F 562 + 0 553 37855 153 19 78 14 15 8 13 5 11 276 chain 2761 chr4 190214555 + 169347454 169347505 LTR32 486 + 406 459 101900 11 8 10 32 chain 513559 chr4 190214555 + 169448686 169455335 L1PA6 6164 + 0 6162 2597 237 0 2 23 2 1 304 1 0 346 0 1 14 0 4 412 4 0 7 0 4 599 0 22 234 0 22 101 0 1 839 0 2 8 1 2 4 0 1 236 41 7 263 5 10 540 0 2 511 517 0 302 1 0 251 0 4 23 2 1 344 5 6 70 0 1 393 1 0 8 chain 44643 chr4 190214555 + 169453420 169453931 MER9a2 513 + 0 513 31768 445 0 2 66 chain 11987 chr4 190214555 + 169565618 169565875 L1MB8 1703 + 1429 1627 66858 4 1 0 132 8 6 16 71 15 25 chain 150731 chr4 190214555 + 169569492 169571172 SVA_D 2077 + 35 2056 12305 881 1 38 80 1 2 7 0 1 54 0 303 320 1 0 335 chain 2989 chr4 190214555 + 169574976 169575036 MADE1 96 - 53 95 99965 12 18 0 30 chain 55318 chr4 190214555 + 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1 2 126 1 0 36 10 13 175 2 1 93 0 1 49 3 0 20 1 2 380 0 1 282 1 9 84 0 1 196 2 1 20 0 11 75 6 9 549 0 4 474 0 1 7 0 4 20 3 1 328 chain 51686 chr4 190214555 + 187542612 187543312 L1PA11 4918 + 3818 4508 28967 89 4 1 196 2 0 155 1 0 53 0 1 18 8 3 59 2 1 39 6 16 26 2 0 9 4 0 4 3 0 20 chain 20127 chr4 190214555 + 187579490 187579751 AluSc 308 + 21 293 56223 105 0 1 93 0 15 22 1 0 28 4 0 8 chain 22435 chr4 190214555 + 187609411 187609668 L1PA7 6471 + 5735 5992 53225 257 chain 40148 chr4 190214555 + 187609997 187610476 L1PA7 6471 + 5985 6464 34557 419 3 1 23 0 2 34 chain 124030 chr4 190214555 + 187657478 187658880 SVA_D 2077 + 21 2077 14842 7 1 0 548 0 40 73 2 79 148 1 539 622 chain 4897 chr4 190214555 + 187685050 187685110 MER101 471 + 406 468 86174 20 0 2 40 chain 36417 chr4 190214555 + 187695845 187696353 THE1B-int 1605 + 18 523 37129 89 0 3 95 0 4 127 0 1 5 0 2 27 0 3 31 0 1 24 38 21 72 chain 14375 chr4 190214555 + 187730202 187730595 MSTB 430 + 13 410 63073 25 200 204 168 chain 62762 chr4 190214555 + 187765150 187765905 LTR17 781 + 0 780 25692 119 0 9 199 1 0 387 4 26 34 5 0 6 chain 6450 chr4 190214555 + 187821925 187822000 MLT1A1 405 + 272 347 79518 75 chain 315661 chr4 190214555 + 187843265 187847012 L1PA7 6471 + 2703 6469 6488 186 0 4 523 0 6 75 1 0 52 0 4 17 0 3 72 0 8 177 0 1 98 0 2 69 23 7 1192 0 1 394 0 5 22 1 0 77 1 3 622 0 1 145 chain 29231 chr4 190214555 + 187896561 187896875 AluYb8 318 + 0 312 43000 132 2 0 180 chain 161531 chr4 190214555 + 187954822 187956683 L1PA5 6144 + 4250 6135 11644 94 0 4 722 0 1 32 0 15 175 1 5 686 7 0 12 1 8 131 chain 31692 chr4 190214555 + 187956704 187957078 L1PA6 6164 + 5782 6156 40581 374 chain 48280 chr4 190214555 + 187974778 187975321 SVA_A 1864 + 1312 1863 30189 30 0 8 513 chain 4398 chr4 190214555 + 187997784 187997839 Tigger3c 601 + 53 108 88899 55 chain 58234 chr4 190214555 + 188068119 188068743 SVA_F 1814 + 1190 1814 26886 624 chain 8477 chr4 190214555 + 188133892 188134012 MER2 342 + 125 246 73730 83 1 0 21 1 2 5 0 1 9 chain 6480 chr4 190214555 + 188171318 188171490 MLT1D 503 + 281 453 79409 47 72 74 12 2 0 39 chain 6084 chr4 190214555 + 188179519 188179654 LTR12C 1709 + 902 1037 80786 59 41 0 16 1 42 18 chain 3730 chr4 190214555 + 188191330 188191380 MER66C 541 + 370 421 93404 30 1 2 19 chain 113917 chr4 190214555 + 188280322 188281652 L1PA5 6144 + 4817 6144 16559 580 0 3 288 9 10 437 7 0 9 chain 190870 chr4 190214555 + 188319108 188322381 L1PB1 5432 + 2495 5281 10073 17 0 153 93 1 2 60 323 0 22 2 0 165 2 0 7 0 3 94 11 0 65 301 0 422 2 0 122 1 5 160 0 1 76 5 6 343 1 2 315 3 0 75 0 2 44 1 2 5 1 0 37 0 4 97 11 13 95 1 0 101 1 2 9 5 0 24 1 0 4 3 2 14 4 0 6 8 6 50 2 1 15 1 0 45 chain 12445 chr4 190214555 + 188319390 188319575 L1PA8 5853 + 5679 5853 66074 14 2 0 18 0 1 28 2 1 19 10 1 92 chain 34971 chr4 190214555 + 188364005 188364532 L1PBa 3878 + 1284 1802 38035 57 20 19 245 69 57 94 0 4 42 chain 22859 chr4 190214555 + 188384594 188384891 LOR1b 457 + 148 443 52566 99 3 1 195 chain 24359 chr4 190214555 + 188390219 188390577 THE1B 368 + 0 368 50237 159 11 10 29 8 6 10 0 4 10 7 16 5 1 0 67 0 1 51 chain 12739 chr4 190214555 + 188399570 188399806 MER30 238 + 7 238 65543 68 8 0 15 44 43 19 0 1 38 1 4 43 chain 48038 chr4 190214555 + 188438304 188438871 LTR22 571 + 0 571 30282 17 0 1 109 0 1 384 0 2 57 chain 28301 chr4 190214555 + 188460124 188460594 LTR12_ 688 + 0 687 44413 179 24 0 75 69 74 63 0 236 60 chain 31380 chr4 190214555 + 188463807 188464209 LOR1b 457 + 51 450 40825 97 3 0 302 chain 26021 chr4 190214555 + 188519905 188520261 THE1B 368 + 0 368 47693 15 2 0 25 0 5 14 0 1 47 2 3 33 5 13 16 1 0 196 chain 26910 chr4 190214555 + 188520542 188520892 THE1B 368 + 0 368 46397 43 1 12 121 1 0 130 5 13 49 chain 120305 chr4 190214555 + 188520892 188522793 THE1B-int 1605 + 0 1597 15481 35 0 3 187 3 4 13 1 2 159 13 14 9 0 25 67 304 1 41 0 1 638 40 6 198 1 2 192 chain 25426 chr4 190214555 + 188522801 188523146 THE1B 368 + 0 368 48592 40 0 15 121 1 0 72 1 2 56 5 13 49 chain 3562 chr4 190214555 + 188543450 188543494 Tigger3c 601 + 343 387 94740 44 chain 20880 chr4 190214555 + 188573535 188573897 THE1B 368 + 0 368 55278 81 2 3 27 1 3 6 2 0 56 40 38 14 7 15 63 7 6 56 chain 454010 chr4 190214555 + 188672901 188678862 L1PA8 5853 + 112 5848 4287 37 0 1 152 18 6 302 1 0 20 3 0 24 4 5 1095 0 1 126 3 9 235 220 0 496 0 1 265 0 1 26 11 12 4 0 1 66 1 0 434 1 2 779 1 0 127 0 1 30 1 0 175 4 0 69 3 0 109 1 8 246 6 7 25 0 2 553 1 0 44 2 0 23 1 2 46 1 0 55 8 7 11 0 1 7 1 0 88 chain 7850 chr4 190214555 + 188675031 188675121 L1P3 4156 + 2737 2827 75255 90 chain 4016 chr4 190214555 + 188704470 188704550 MADE1 96 - 0 96 91333 30 13 29 37 chain 14743 chr4 190214555 + 188755083 188755393 LTR12C 1709 + 650 877 62610 33 82 0 66 19 10 7 0 9 62 1 0 40 chain 13048 chr4 190214555 + 188847769 188847986 MER30 238 + 0 238 65028 15 6 22 66 18 26 70 3 0 39 chain 88013 chr4 190214555 + 188850764 188851865 MER11A 1151 + 0 1151 20043 79 0 8 143 1 0 64 0 11 380 2 1 164 20 52 39 0 1 41 0 1 101 1 0 66 chain 14909 chr4 190214555 + 188965232 188965443 THE1B 368 + 161 364 62376 11 2 1 19 4 0 99 12 9 64 chain 23789 chr4 190214555 + 188971903 188972264 THE1B 368 + 0 368 51126 44 27 42 86 1 0 20 4 0 99 10 7 70 chain 5249 chr4 190214555 + 189004894 189004953 Tigger1 2417 + 1487 1546 84454 59 chain 59879 chr4 190214555 + 189058270 189059024 LTR17 781 + 0 781 26408 327 1 0 94 2 3 141 0 1 144 1 27 44 chain 77813 chr4 190214555 + 189075348 189076265 L1PA7 6471 + 5537 6459 22141 81 1 0 439 0 1 79 0 1 58 0 4 259 chain 565059 chr4 190214555 + 189137085 189143104 L1HS 6032 + 6 6032 94 575 0 2 1210 0 5 4234 chain 29181 chr4 190214555 + 189150890 189151438 LTR10E 629 + 0 599 43082 20 1 0 137 0 60 160 12 11 26 101 98 22 1 0 14 25 22 29 chain 23602 chr4 190214555 + 189225579 189225855 AluYk4 311 + 11 288 51429 109 1 2 166 chain 100344 chr4 190214555 + 189236134 189237412 LTR12C 1709 + 0 1709 18256 34 5 14 416 0 2 184 0 278 143 0 47 106 11 4 89 4 5 70 0 102 128 4 3 84 chain 39150 chr4 190214555 + 189281887 189282419 MLT2A2 560 + 0 560 35250 169 4 11 10 7 15 186 12 22 59 0 2 15 0 1 70 chain 31494 chr4 190214555 + 189298264 189298608 L1PA3long 6157 + 3850 4194 40740 344 chain 72107 chr4 190214555 + 189351056 189351873 L1PA4 6152 + 2993 3804 23512 190 1 0 500 5 0 121 chain 35598 chr4 190214555 + 189393625 189394032 L1PA4 6152 + 4596 5005 37661 191 0 2 216 chain 32642 chr4 190214555 + 189402588 189403021 THE1D-int 1627 + 0 536 39819 333 1 0 6 5 109 88 chain 52661 chr4 190214555 + 189403701 189404266 L1PA2 6032 + 5465 6030 28680 565 chain 8883 chr4 190214555 + 189644342 189644552 Tigger3a 397 + 139 365 72812 9 0 10 62 85 91 54 chain 49500 chr4 190214555 + 189650515 189651184 PABL_B 668 + 0 668 29764 73 15 16 146 1 0 39 5 4 72 1 0 162 1 2 154 chain 27423 chr4 190214555 + 189703486 189703779 AluYb8 318 + 0 291 45677 132 2 0 159 chain 38748 chr4 190214555 + 189718613 189719076 LTR2 463 + 0 463 35530 463 chain 80639 chr4 190214555 + 189798130 189799003 L1PA4 6152 + 5006 5880 21507 811 0 1 62 chain 122716 chr4 190214555 + 189877501 189878859 L1PA4 6152 + 4521 5880 15081 344 0 1 1014 chain 5243 chr4 190214555 + 189889876 189890016 Ricksha_c 1012 + 91 216 84488 39 33 29 9 1 0 7 5 0 27 7 2 12 chain 320663 chr4 190214555 + 189926294 189930104 HERVH-int 3825 + 0 3825 6394 333 1 0 199 5 0 37 13 11 9 4 0 14 7 1 14 1 38 44 1 0 56 0 1 6 0 2 14 0 1 53 0 3 72 11 4 618 1 0 292 1 4 5 3 0 58 9 5 973 0 1 759 1 2 196 chain 444622 chr4 190214555 + 189963770 189968879 L1PA4 6152 + 21 5183 4478 454 6 10 388 0 2 75 0 4 17 0 1 5 1 0 85 0 2 77 0 2 29 0 4 239 1 6 278 0 5 140 0 4 66 1 4 282 0 2 110 0 3 71 0 4 696 0 4 70 0 2 88 0 3 1930 chain 40161 chr4 190214555 + 189971330 189971769 SVA_D 2077 + 1636 2075 34549 439 chain 80328 chr4 190214555 + 189991569 189992471 L1PA4 6152 + 3504 4407 21568 732 0 1 170 chain 45355 chr4 190214555 + 190007428 190008191 L1PB1 5432 + 4661 5404 31391 13 0 3 117 0 8 181 2 1 13 1 0 106 13 11 24 1 0 9 1 0 7 9 5 9 2 0 52 2 1 16 2 1 42 1 0 16 24 12 18 3 1 4 1 0 11 6 4 24 1 0 6 6 9 8 1 0 11 chain 28270 chr4 190214555 + 190051557 190051896 LTR17 781 + 445 781 44454 325 1 0 4 2 0 7 chain 18244 chr4 190214555 + 190093271 190093564 L1PA14 3548 + 3171 3456 58420 161 1 0 10 5 1 23 0 13 10 34 19 7 1 0 41 chain 28628 chr4_GL000008v2_random 209709 + 7574 7918 L1P1 4361 + 3718 4065 43902 166 0 2 48 0 1 130 chain 452927 chr4_GL000008v2_random 209709 + 24369 29661 L1PA4 6152 + 15 5332 4306 111 1 15 898 0 1 405 1 2 284 0 1 697 0 3 350 0 4 268 6 7 140 0 1 480 1 0 1650 chain 22432 chr4_GL000008v2_random 209709 + 56767 57048 LTR14A 344 + 0 344 53229 42 0 60 64 0 4 170 1 0 4 chain 127852 chr4_GL000008v2_random 209709 + 57143 58805 HERVK14-int 1672 + 1 1647 14302 28 1 0 12 1 0 47 1 0 44 2 1 172 1 0 28 2 0 235 1 0 249 3 2 163 1 0 79 3 1 9 3 0 35 1 0 46 12 16 82 1 0 49 12 13 15 0 1 82 7 6 55 0 1 7 2 0 31 2 0 9 1 0 128 chain 36112 chr4_GL000008v2_random 209709 + 58824 59275 MER9a2 513 + 0 513 37336 15 1 0 4 0 1 207 2 68 97 0 2 20 6 0 99 chain 150738 chr4_GL000008v2_random 209709 + 60614 62629 HERVK9-int 4720 + 54 3614 12302 4 1 0 27 2 3 36 3 2 6 1 0 26 6 5 227 9 11 5 2 0 266 14 0 824 0 924 230 52 690 274 chain 415970 chr4_GL000008v2_random 209709 + 69800 74992 L1PA7 6471 + 1129 6464 4940 53 5 6 70 0 40 251 8 6 212 0 1 473 0 4 244 1 0 77 1 11 62 1 2 71 0 1 176 0 4 356 4 5 65 1 0 92 0 4 130 1 5 124 0 70 70 0 1 472 0 1 463 0 1 185 19 19 111 0 1 439 9 12 96 1 5 90 3 0 610 3 4 135 3 0 5 chain 67300 chr4_GL000008v2_random 209709 + 195605 196372 L1PA5 6144 + 5367 6135 24620 435 0 1 332 chain 163762 chr5 181538259 + 22510 24396 L1PA5 6144 + 4198 6085 11499 18 4 0 121 0 4 287 1 0 63 0 4 1082 2 0 308 chain 106472 chr5 181538259 + 34747 36034 L1PA7 6471 + 5178 6467 17494 256 0 7 179 1 0 6 8 0 174 0 1 418 7 8 229 0 2 9 chain 6457 chr5 181538259 + 66383 66462 MER30B 195 + 115 194 79491 79 chain 17163 chr5 181538259 + 67597 67820 THE1C 375 + 152 375 59616 95 4 5 98 1 0 25 chain 119088 chr5 181538259 + 67820 69301 THE1C-int 1605 + 0 1605 15683 14 2 1 99 0 54 161 0 6 110 0 7 332 0 12 26 0 45 232 0 1 505 chain 28996 chr5 181538259 + 69301 69663 THE1C 375 + 14 375 43327 336 1 0 25 chain 8837 chr5 181538259 + 119318 119434 MER85 139 + 14 139 72901 85 0 10 7 1 0 23 chain 38501 chr5 181538259 + 133396 133913 L1PB1 5432 + 4579 5103 35707 50 1 0 79 0 1 66 0 1 83 0 2 91 1 0 62 0 2 39 0 1 4 5 4 15 0 3 21 chain 14162 chr5 181538259 + 234557 234805 MER2 342 + 104 315 63365 5 1 0 74 53 16 103 0 1 12 chain 35775 chr5 181538259 + 242195 242652 MER9a3 513 + 2 513 37551 16 8 22 139 0 1 78 0 17 43 0 21 95 1 2 77 chain 381889 chr5 181538259 + 243976 249305 HERVK9-int 4720 + 36 4701 5455 13 8 5 4 1 0 66 1 0 8 1 0 30 13 12 216 7 8 396 1 2 39 0 4 107 0 3 82 1 0 792 2 0 15 0 1 101 130 0 89 586 0 194 0 3 93 0 4 721 4 10 245 0 1 11 1 0 35 0 2 6 0 5 180 5 24 25 11 15 500 5 6 362 0 1 138 1 7 32 0 1 51 chain 6617 chr5 181538259 + 245882 245954 HERVK9-int 4720 + 1873 1945 78911 72 chain 4673 chr5 181538259 + 246445 246503 HERVK9-int 4720 + 1973 2031 87430 58 chain 13621 chr5 181538259 + 246510 246678 HERVK9-int 4720 + 1971 2139 64137 168 chain 37389 chr5 181538259 + 249325 249795 MER9a3 513 + 1 513 36483 20 0 2 156 0 1 78 0 17 41 0 21 96 5 6 74 chain 10308 chr5 181538259 + 545020 545189 LTR12 884 + 78 378 69788 37 1 0 66 1 0 18 15 148 31 chain 14474 chr5 181538259 + 572931 573133 MER30 238 + 25 238 62929 58 1 0 25 4 15 32 0 4 31 3 0 48 chain 3803 chr5 181538259 + 702201 702245 MSTB 430 + 377 421 92818 44 chain 26043 chr5 181538259 + 702470 702899 LTR7B 505 + 0 503 47668 105 0 10 69 35 11 27 42 131 9 1 0 24 0 1 54 7 6 56 chain 277868 chr5 181538259 + 702901 706821 HERVH-int 3825 + 0 3825 7493 450 186 0 82 191 0 38 1 0 10 1 0 24 1 52 42 2 1 24 8 7 23 1 2 24 1 0 291 13 14 152 16 1 448 4 31 110 0 1 177 1 5 728 0 1 238 150 362 131 1 0 123 3 8 225 chain 3570 chr5 181538259 + 703414 703534 HERVH-int 3825 + 513 567 82552 19 66 0 35 chain 5486 chr5 181538259 + 703619 703680 HERVH-int 3825 + 471 532 79730 61 chain 5039 chr5 181538259 + 703685 703741 HERVH-int 3825 + 476 532 85472 56 chain 3895 chr5 181538259 + 703746 703806 HERVH-int 3825 + 532 590 85671 38 1 0 10 1 0 10 chain 31154 chr5 181538259 + 708074 708501 LTR7B 505 + 0 503 41017 105 0 10 69 6 13 18 0 26 8 0 31 38 0 1 43 1 0 24 0 1 25 0 2 27 2 1 61 chain 12683 chr5 181538259 + 764828 765047 LTR12C 1709 + 773 1032 50396 45 0 40 174 chain 29408 chr5 181538259 + 765062 765743 LTR12C 1709 + 650 1546 42723 160 0 40 119 0 41 58 2 17 6 0 1 17 277 395 42 chain 2565 chr5 181538259 + 765444 765471 LTR12C 1709 + 1010 1037 103265 27 chain 28934 chr5 181538259 + 972271 972671 L1PA8 5853 + 5018 5853 43428 47 1 443 56 1 0 44 2 0 65 7 6 9 1 0 52 2 1 19 1 0 93 chain 10916 chr5 181538259 + 1118110 1118335 LTR8 732 + 586 732 68675 78 79 0 68 chain 8603 chr5 181538259 + 1148018 1148179 MER4D 903 + 727 895 73448 53 41 46 20 0 1 41 0 1 6 chain 54884 chr5 181538259 + 1267363 1267992 L1PA5 6144 + 5513 6144 27910 617 1 3 11 chain 5223 chr5 181538259 + 1561018 1561079 LTR2C 499 + 438 499 84581 61 chain 163634 chr5 181538259 + 1585416 1587313 SVA_D 2077 + 12 2072 11505 4 1 0 9 0 30 669 0 3 34 3 0 145 3 137 50 1 0 120 48 0 139 0 49 671 chain 2957 chr5 181538259 + 1586456 1586503 SVA_D 2077 + 986 1084 42524 21 0 51 26 chain 171432 chr5 181538259 + 1645663 1647573 L1PA5 6144 + 4213 6131 11025 744 0 1 270 0 3 60 0 4 836 chain 30861 chr5 181538259 + 1668865 1669323 MER4A1 472 + 0 472 41258 19 0 1 90 0 1 108 4 31 15 21 0 126 13 15 32 0 4 15 1 0 4 0 1 10 chain 28507 chr5 181538259 + 1682360 1682665 AluYa5 310 + 0 303 44121 132 2 0 171 chain 4016 chr5 181538259 + 1697101 1697146 MADE1 96 + 50 95 91331 45 chain 544872 chr5 181538259 + 1709818 1715824 L1PA3long 6157 + 2 6147 1038 145 5 6 624 1 129 835 0 2 547 0 4 98 0 4 2308 0 1 189 1 0 1253 chain 22394 chr5 181538259 + 1716678 1717198 LTR10E 629 + 0 574 53284 13 20 31 116 17 14 106 30 78 21 1 0 47 119 121 4 1 0 17 2 0 6 chain 13507 chr5 181538259 + 1894364 1894682 THE1B 368 + 0 346 64306 15 2 0 32 0 1 63 96 130 6 7 0 40 14 16 43 chain 33615 chr5 181538259 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35 chain 27801 chr5 181538259 + 2071376 2071728 THE1A 353 + 0 353 45180 109 1 2 242 chain 23521 chr5 181538259 + 2202316 2202580 L1PA5 6144 + 5701 5965 51552 264 chain 164239 chr5 181538259 + 2243575 2245677 HERVL-int 5654 + 3546 5637 11470 486 7 22 656 0 3 77 0 13 13 33 6 396 22 0 8 1 7 164 10 11 229 chain 47071 chr5 181538259 + 2264359 2265018 L1PA8A 6298 + 5633 6290 30623 76 4 5 166 6 0 183 5 6 130 0 1 41 25 26 23 chain 16226 chr5 181538259 + 2400988 2401210 THE1B-int 1605 + 0 231 60714 11 4 6 114 0 2 71 0 6 4 1 0 17 chain 20580 chr5 181538259 + 2402831 2403186 THE1B 368 + 8 368 55669 161 1 0 29 91 97 73 chain 33517 chr5 181538259 + 2565789 2566241 L1PA8 5853 + 5409 5853 39070 155 6 5 39 2 0 71 1 0 8 7 5 48 2 1 18 1 0 94 chain 33278 chr5 181538259 + 2707439 2707807 L1PA4 6152 + 5783 6151 39279 368 chain 36881 chr5 181538259 + 2935076 2935532 L1PA5 6144 + 5684 6139 36826 207 1 0 90 18 18 140 chain 18866 chr5 181538259 + 2971959 2972174 L1PA4 6152 + 5936 6152 57690 65 0 1 150 chain 5028 chr5 181538259 + 3030288 3030350 L1MC1 2226 + 1743 1805 85528 62 chain 35530 chr5 181538259 + 3053024 3053426 L1PA5 6144 + 5732 6135 37696 262 0 1 140 chain 176320 chr5 181538259 + 3255555 3257507 L1PA3long 6157 + 4203 6157 10762 1103 0 1 629 3 4 217 chain 66093 chr5 181538259 + 3290963 3291690 L1PA4 6152 + 5010 5741 24938 272 0 4 455 chain 2592 chr5 181538259 + 3355809 3355911 MLT2B4 540 + 6 118 103060 18 58 68 26 chain 70031 chr5 181538259 + 3408109 3408883 L1PA3long 6157 + 4563 5337 23989 774 chain 548095 chr5 181538259 + 3439025 3445059 L1PA3long 6157 + 8 6156 856 144 0 1 118 0 108 810 0 3 4814 0 3 143 1 0 4 chain 29190 chr5 181538259 + 3478689 3479071 L1P3 4156 + 3758 4139 43063 272 15 17 60 2 0 7 2 1 24 chain 53122 chr5 181538259 + 3480276 3480861 L1PA3long 6157 + 5572 6157 28523 585 chain 47944 chr5 181538259 + 3497588 3498501 L1PA10 4194 + 3488 4150 30318 68 6 1 51 295 44 131 0 3 77 0 1 43 0 2 22 0 2 182 4 1 34 chain 29719 chr5 181538259 + 3499159 3499472 AluYb8 318 + 1 314 42348 313 chain 38931 chr5 181538259 + 3534406 3534882 L1PA6 6164 + 5689 6158 35407 142 0 1 141 1 0 6 19 0 23 0 10 12 1 0 35 0 3 96 chain 32861 chr5 181538259 + 3550459 3550912 L1PA11 4918 + 3448 3903 39619 36 0 2 173 2 0 7 15 19 6 2 0 212 chain 19629 chr5 181538259 + 3672842 3673204 THE1D 372 + 0 372 56880 72 10 20 12 0 1 6 4 4 39 72 71 147 chain 60322 chr5 181538259 + 3847424 3848141 HERVL-int 5654 + 3300 4017 26288 717 chain 13617 chr5 181538259 + 3901259 3901403 L1PA2 6032 + 5885 6029 64143 144 chain 25424 chr5 181538259 + 3910788 3911077 L1PA4 6152 + 5858 6152 48594 283 0 5 6 chain 39214 chr5 181538259 + 3986517 3987051 MLT2A2 560 + 6 560 35204 77 10 11 23 0 1 278 8 19 34 0 1 56 0 6 48 chain 98506 chr5 181538259 + 4056457 4057730 L1PB1 5432 + 2442 3720 18480 47 1 3 34 8 4 304 1 0 52 0 3 40 0 4 494 10 11 282 chain 28783 chr5 181538259 + 4090540 4090868 L1PA7 6471 + 6139 6467 43654 328 chain 44412 chr5 181538259 + 4139651 4140270 L1PA10 4194 + 3533 4147 31878 81 0 1 34 22 24 432 20 12 30 chain 53052 chr5 181538259 + 4148585 4149173 L1PA3long 6157 + 5569 6157 28555 588 chain 25520 chr5 181538259 + 4288442 4288784 L1PA8 5853 + 5518 5853 48452 44 1 0 46 2 0 70 2 1 9 1 0 51 3 2 19 2 1 92 chain 33480 chr5 181538259 + 4298813 4299175 L1PA2 6032 + 5672 6032 39106 354 2 0 6 chain 9197 chr5 181538259 + 4367923 4368051 L1PA7 6471 + 6341 6470 72126 82 5 6 41 chain 31143 chr5 181538259 + 4458902 4459289 MLT2A1 477 + 7 395 41022 161 5 2 9 0 1 22 0 3 190 chain 444225 chr5 181538259 + 4459442 4465252 HERVL-int 5654 + 0 5654 4490 311 4 5 258 0 1 306 10 11 16 0 2 14 11 14 54 0 1 401 0 3 98 5 4 414 1 2 361 1 2 81 2 1 118 0 1 533 1 0 4 9 11 708 1 2 386 0 1 248 1 2 210 6 10 60 34 0 31 149 10 521 24 14 166 0 1 37 0 1 7 1 4 141 0 1 66 chain 5658 chr5 181538259 + 4464140 4464207 HERVL-int 5654 - 1507 1575 82521 23 0 1 44 chain 30427 chr5 181538259 + 4465252 4465702 MLT2A1 477 + 0 423 41653 168 5 2 34 0 1 128 11 2 13 8 1 36 3 0 14 6 0 24 chain 43552 chr5 181538259 + 4470583 4471064 L1PA3long 6157 + 5675 6157 32413 332 0 1 149 chain 23988 chr5 181538259 + 4526624 4526987 THE1B 368 + 0 368 50810 23 0 1 8 1 0 75 0 1 6 1 0 6 0 1 48 1 0 27 1 4 10 0 4 17 1 0 6 8 7 62 1 0 4 1 2 56 chain 551252 chr5 181538259 + 4615428 4621437 L1PA2 6032 + 2 6032 658 4 0 1 249 1 0 1457 0 1 192 0 1 1231 0 1 1637 0 18 1238 chain 39115 chr5 181538259 + 4686552 4686984 L1PA3long 6157 + 5725 6157 35275 432 chain 68040 chr5 181538259 + 4688247 4689209 L1PA8 5853 + 4895 5853 24450 109 8 5 555 1 0 43 3 1 70 2 1 10 5 6 35 45 43 27 0 4 49 chain 507738 chr5 181538259 + 4709341 4715923 L1PA7 6471 + 6 6459 2859 353 1 0 53 7 2 186 10 11 161 5 0 3 1 0 452 1 0 231 1 9 305 1 2 14 0 1 840 3 4 185 3 0 23 0 28 231 0 4 354 166 1 28 1 0 4 0 1 52 0 1 6 0 4 25 12 10 238 0 2 19 1 2 31 27 25 87 20 20 384 0 1 15 1 0 160 1 0 4 0 1 309 0 1 137 0 1 594 1 0 223 0 1 4 1 0 82 0 1 204 0 1 190 1 2 130 chain 7282 chr5 181538259 + 4712809 4712923 L1PA7 6471 - 1391 1506 76725 39 20 21 55 chain 101256 chr5 181538259 + 4763314 4764620 L1PA4 6152 + 3096 6152 18156 413 0 2 129 148 1893 249 0 3 367 chain 95458 chr5 181538259 + 4771188 4772293 L1PA3long 6157 + 5077 6157 18848 47 24 9 12 10 1 238 1 0 773 chain 42593 chr5 181538259 + 4786828 4787345 L1PA5 6144 + 5627 6144 33004 354 16 9 9 0 7 138 chain 17001 chr5 181538259 + 4801279 4801638 THE1B 368 + 0 368 59804 63 25 28 14 16 18 54 40 37 10 11 19 59 11 10 56 chain 23882 chr5 181538259 + 4805878 4806159 L1PA7 6471 + 6183 6464 50973 281 chain 47329 chr5 181538259 + 4812377 4812962 L1P3 4156 + 3526 4116 30529 5 0 1 13 3 7 68 0 1 205 0 1 280 2 0 9 chain 115151 chr5 181538259 + 4837360 4838813 LTR12C 1709 + 0 1709 16364 168 0 3 92 0 2 218 6 7 14 0 1 4 1 3 207 0 118 100 0 1 174 1 0 5 3 1 106 11 4 184 1 8 56 0 131 102 chain 75872 chr5 181538259 + 4924927 4925896 LTR5_Hs 974 + 0 974 22620 169 1 0 115 1 2 181 0 1 188 1 0 163 8 15 19 20 18 103 chain 21181 chr5 181538259 + 5001801 5002049 L1PA7 6471 + 5156 5404 54910 248 chain 367218 chr5 181538259 + 5026210 5031144 L1PA8A 6298 + 173 6282 5708 16 2 0 15 2 0 4 1 0 7 36 30 13 5 0 8 2 0 42 1 0 23 9 1 75 2 0 17 1 0 8 7 5 78 1 0 28 7 8 126 0 1 99 8 9 22 4 0 172 13 36 109 19 11 130 0 3 768 6 1195 28 3 4 134 2 0 7 12 9 139 3 4 128 15 13 169 8 9 93 2 1 661 0 1 44 4 9 140 8 6 162 9 9 72 1 0 9 0 1 200 2 1 172 0 1 31 0 2 88 0 1 97 0 1 500 0 6 11 7 0 87 chain 25758 chr5 181538259 + 5083144 5083508 THE1C 375 + 8 375 48084 51 4 10 38 7 3 73 1 2 60 3 4 101 1 0 25 chain 34853 chr5 181538259 + 5087628 5088090 LTR2 463 + 0 463 38123 55 0 3 309 1 0 12 6 7 25 1 0 28 1 0 24 chain 6253 chr5 181538259 + 5097420 5097502 MER2 342 + 135 218 80163 71 0 1 11 chain 114740 chr5 181538259 + 5137603 5139314 LTR12C 1709 + 0 1709 16420 604 0 1 10 1 0 177 9 325 5 2 0 102 0 4 134 319 0 275 2 1 71 chain 110319 chr5 181538259 + 5142751 5144135 L1PA7 6471 + 5011 6469 17033 23 13 7 236 0 1 56 0 6 7 0 1 4 0 69 18 0 1 181 1 0 518 1 0 162 6 7 34 0 3 124 chain 3339 chr5 181538259 + 5163318 5163358 THE1C 375 + 5 46 96697 33 0 1 7 chain 18764 chr5 181538259 + 5225319 5225613 AluSc 308 + 0 291 57828 42 23 20 145 0 1 49 21 20 14 chain 28764 chr5 181538259 + 5228682 5229016 LTR10C 591 + 12 345 43682 22 2 0 61 0 1 249 chain 143198 chr5 181538259 + 5412583 5414395 L1PA8 5853 + 4027 5853 12842 313 3 0 134 0 1 54 1 0 61 0 16 13 0 7 298 0 1 89 0 1 270 12 10 182 0 1 86 1 0 44 2 0 71 3 2 59 2 1 19 1 0 20 1 0 73 chain 230235 chr5 181538259 + 5477162 5480069 L1PA8 5853 + 2864 5827 8740 24 1 0 46 0 4 282 0 1 170 0 4 88 0 1 182 0 3 21 0 5 175 0 11 25 0 4 277 6 15 168 0 3 44 12 15 104 1 3 17 4 0 449 1 4 73 0 2 19 1 0 187 0 1 42 9 7 149 1 0 31 0 4 6 0 1 33 1 0 44 2 0 49 0 4 17 2 1 13 2 1 39 6 12 16 1 0 67 chain 39450 chr5 181538259 + 5515522 5515972 LTR7 482 + 0 482 35043 197 0 1 32 0 31 221 chain 291490 chr5 181538259 + 5515974 5519578 HERVH-int 3825 + 0 3825 7088 533 12 7 30 1 0 9 62 0 22 4 55 43 21 0 80 0 1 5 2 0 49 3 0 9 0 3 48 0 1 470 0 1 75 0 1 17 0 2 222 8 33 299 0 10 17 0 1 17 1 2 187 0 1 820 10 12 38 0 210 262 3 8 225 chain 3512 chr5 181538259 + 5516559 5516601 HERVH-int 3825 + 460 500 83163 29 2 0 11 chain 39746 chr5 181538259 + 5520712 5521164 LTR7 482 + 0 482 34859 254 1 0 12 0 31 185 chain 27757 chr5 181538259 + 5580238 5580608 THE1B 368 + 0 368 45240 119 6 7 43 1 0 28 2 0 171 chain 6237 chr5 181538259 + 5624351 5624484 MSTB 430 + 58 189 80216 59 43 41 31 chain 2513 chr5 181538259 + 5683142 5683600 MLT1H2 457 + 58 422 103591 26 106 97 15 290 205 21 chain 5609 chr5 181538259 + 5692772 5692837 MER51B 395 + 330 395 82767 65 chain 244459 chr5 181538259 + 5695611 5699366 MER61-int 3695 + 1 3694 8367 27 29 14 4 1 0 69 0 5 78 40 0 72 7 6 50 5 1 5 3 0 62 31 18 60 0 1 51 0 1 17 41 45 19 3 5 8 2 0 5 0 2 228 8 6 50 1 2 9 9 8 53 0 1 140 1 6 33 0 4 195 0 1 203 26 27 154 1 0 39 6 5 345 22 0 48 0 3 44 1 2 9 1 0 179 1 2 107 0 1 84 2 1 53 0 1 98 0 4 5 1 2 41 18 44 75 6 5 61 14 23 124 8 6 19 3 5 7 2 0 143 49 32 79 8 3 23 10 12 26 0 1 91 1 0 23 0 40 9 46 0 24 chain 28803 chr5 181538259 + 5809910 5810312 MLT2A1 477 + 0 401 43625 13 1 0 155 5 2 9 0 1 25 1 2 17 0 1 16 4 5 139 1 0 16 chain 19501 chr5 181538259 + 5869914 5870131 L1PA5 6144 + 5926 6143 57023 217 chain 26226 chr5 181538259 + 5901825 5902198 THE1C 375 + 0 375 47381 183 17 15 126 0 1 19 10 13 18 chain 6926 chr5 181538259 + 5932886 5932968 MER51A 677 + 262 344 77867 82 chain 8757 chr5 181538259 + 6011017 6011124 MSTB 430 + 10 117 73087 107 chain 20930 chr5 181538259 + 6053614 6053917 MSTA-int 1630 + 1309 1619 55219 195 1 8 41 13 12 14 1 2 38 chain 15865 chr5 181538259 + 6062639 6062989 THE1B 368 + 0 356 61207 102 133 141 63 7 6 40 1 0 4 chain 18950 chr5 181538259 + 6072840 6073062 L1PA7 6471 + 5773 5997 57596 32 0 2 190 chain 30469 chr5 181538259 + 6132365 6132766 MSTA-int 1630 + 1226 1626 41607 288 7 6 106 chain 21220 chr5 181538259 + 6168518 6168783 L1PA5 6144 + 5877 6143 54858 8 0 1 95 6 1 10 1 6 145 chain 29368 chr5 181538259 + 6200521 6200892 THE1B 368 + 0 368 42789 176 1 0 143 5 3 46 chain 21916 chr5 181538259 + 6263738 6264109 THE1C 375 + 0 375 53948 86 41 12 9 0 32 42 4 5 41 9 10 113 8 7 18 chain 23061 chr5 181538259 + 6271661 6271985 THE1A 353 + 0 325 52276 71 1 0 4 11 15 20 1 0 92 1 0 97 1 0 4 0 1 21 chain 15136 chr5 181538259 + 6357924 6358100 L1PA8A 6298 + 5876 6053 62116 41 0 1 135 chain 75243 chr5 181538259 + 6363642 6364462 L1PA2 6032 + 5195 6016 22784 679 0 1 141 chain 28640 chr5 181538259 + 6388597 6388909 AluYa5 310 + 0 308 43885 97 2 0 26 2 0 185 chain 18812 chr5 181538259 + 6417865 6418130 MER1B 344 + 73 342 57768 189 2 0 5 14 20 55 chain 28435 chr5 181538259 + 6524273 6524585 AluYb8 318 + 5 317 44215 312 chain 34079 chr5 181538259 + 6569608 6570264 MLT2A1 477 + 2 477 38643 13 0 2 151 5 2 215 20 0 14 185 26 6 1 0 46 chain 12680 chr5 181538259 + 6671543 6671814 L1PB1 5432 + 5169 5418 65658 50 3 2 10 7 6 43 1 0 16 3 0 9 9 1 16 32 27 21 1 0 21 1 0 13 1 0 14 chain 3020 chr5 181538259 + 6761322 6761354 MER53 195 + 156 188 99648 32 chain 4839 chr5 181538259 + 6788741 6788851 MER20 218 + 57 170 86478 28 32 38 38 3 0 9 chain 16253 chr5 181538259 + 6853723 6853934 THE1B 368 + 154 368 60677 21 1 0 15 5 9 169 chain 7410 chr5 181538259 + 6891621 6891755 MER61A 341 + 105 239 76369 35 1 0 23 28 29 47 chain 14768 chr5 181538259 + 6897250 6897648 L1PREC2 3366 + 2691 3048 62573 54 1 2 5 2 0 27 16 7 20 1 0 44 1 0 3 3 0 14 51 38 16 6 4 26 33 24 20 21 19 34 chain 136896 chr5 181538259 + 6916841 6918964 L1PB1 5432 + 3366 5423 13346 324 1 0 15 0 1 4 1 0 6 41 22 214 21 5 279 4 0 177 51 50 166 10 1 45 7 19 102 0 1 7 0 2 6 5 4 287 1 2 9 3 0 24 1 0 6 1 0 12 18 12 44 5 7 19 1 0 46 1 0 12 1 0 4 19 9 16 2 0 7 1 0 12 0 2 24 1 0 13 7 3 5 1 0 13 1 0 10 1 0 9 chain 457823 chr5 181538259 + 6952517 6958282 L1PA8 5853 + 108 5853 4187 197 15 3 280 0 1 19 0 7 45 14 8 247 7 4 226 1 0 737 0 1 142 4 1 231 10 0 612 1 2 582 0 1 312 1 2 12 13 18 856 0 1 332 1 0 20 0 2 88 1 4 201 1 0 92 0 2 126 1 0 38 6 5 43 2 0 69 30 28 35 2 1 19 1 0 93 chain 497532 chr5 181538259 + 6966278 6971675 L1PA2 6032 + 3 6032 3219 1034 0 633 5 0 1 4093 3 1 262 chain 61619 chr5 181538259 + 6998383 6999207 LTR12 884 + 0 869 25958 355 0 58 229 6 8 149 39 24 46 chain 71889 chr5 181538259 + 7056808 7057577 L1PA2 6032 + 5263 6032 23570 769 chain 15437 chr5 181538259 + 7142953 7143139 L1PA7 6471 + 6284 6470 61738 186 chain 557898 chr5 181538259 + 7170549 7176706 L1PA3long 6157 + 0 6157 251 355 1 0 273 4 0 690 0 1 2196 1 0 1701 1 2 92 0 4 843 chain 555672 chr5 181538259 + 7193769 7199795 L1PA2 6032 + 0 6029 372 1040 0 1 965 0 1 3171 0 1 850 chain 553359 chr5 181538259 + 7230600 7236733 L1PA3long 6157 + 7 6155 528 1240 0 2 830 0 3 2280 0 4 678 0 3 38 0 1 106 1 0 884 0 3 76 chain 27125 chr5 181538259 + 7262336 7262742 LTR7 482 + 0 482 46089 69 8 46 109 8 40 25 5 6 12 0 1 78 0 2 31 12 14 49 chain 36441 chr5 181538259 + 7263579 7264015 LTR7 482 + 0 469 37112 263 1 32 124 12 14 36 chain 297437 chr5 181538259 + 7264030 7267614 HERVH-int 3825 + 0 3816 6904 212 0 11 309 5 0 38 1 0 10 1 0 8 44 16 15 1 0 12 3 41 26 2 1 21 21 0 9 2 1 49 1 0 586 0 1 319 4 31 419 0 1 127 0 1 438 1 0 390 0 3 25 8 218 116 0 1 361 chain 37853 chr5 181538259 + 7268883 7269331 LTR7 482 + 0 482 36173 225 0 1 37 1 32 124 12 14 49 chain 6587 chr5 181538259 + 7358803 7358939 MER2B 336 + 197 336 79024 74 44 47 18 chain 19400 chr5 181538259 + 7365648 7365877 AluY 311 + 8 234 57129 123 3 0 103 chain 3717 chr5 181538259 + 7453400 7453448 Tigger1 2417 + 2067 2115 93489 48 chain 16300 chr5 181538259 + 7536704 7536898 L1PA7 6471 + 6184 6384 60623 19 0 6 175 chain 55860 chr5 181538259 + 7664467 7665222 MER4E 760 + 0 760 27603 17 1 2 119 0 5 7 23 26 65 0 1 23 0 8 8 0 1 200 1 0 50 13 0 228 chain 26075 chr5 181538259 + 7674873 7675187 AluYk4 311 + 0 306 47617 213 4 1 81 5 0 11 chain 20417 chr5 181538259 + 7744106 7744387 L1PA8 5853 + 5578 5853 55865 30 8 6 64 2 1 11 1 0 54 1 0 16 1 0 93 chain 22648 chr5 181538259 + 7848621 7848993 THE1C 375 + 0 375 52909 81 4 5 89 64 67 108 1 0 25 chain 11221 chr5 181538259 + 7937691 7937860 MSTA 426 + 249 426 68216 44 21 29 104 chain 26955 chr5 181538259 + 8038015 8038357 THE1B-int 1605 + 1260 1599 46329 42 7 4 293 chain 96189 chr5 181538259 + 8044128 8045343 L1PA8 5853 + 4633 5847 18753 147 0 1 224 1 4 184 9 12 191 1 0 168 1 0 44 2 0 70 2 1 11 1 0 50 2 1 19 1 0 87 chain 42063 chr5 181538259 + 8046184 8046791 THE1B-int 1605 + 0 635 33317 33 8 9 142 0 3 226 13 38 94 35 34 56 chain 6439 chr5 181538259 + 8073411 8073487 L1P4 1494 + 471 547 79544 76 chain 9459 chr5 181538259 + 8124634 8124842 L1MA2 4263 + 3881 4084 71588 23 63 61 93 8 5 21 chain 495954 chr5 181538259 + 8159063 8164555 L1PA3long 6157 + 0 6147 3270 94 0 526 156 0 128 104 0 1 49 0 1 4765 1 0 323 chain 162512 chr5 181538259 + 8168689 8171194 L1PA7 6471 + 4246 6467 11578 22 0 1 4 1 0 62 2 3 80 0 11 35 1 2 307 24 4 5 1 0 4 0 1 531 8 0 305 9 6 15 412 144 10 0 1 43 2 3 231 1 2 210 10 10 82 2 1 86 chain 492161 chr5 181538259 + 8220024 8226179 L1PA7 6471 + 311 6466 3368 303 0 1 8 0 1 181 0 1 1291 4 5 130 9 1 645 13 20 270 0 3 108 3 1 94 0 1 262 4 3 28 2 0 341 2 1 816 19 20 109 6 2 664 1 0 18 10 11 59 0 1 174 0 1 581 chain 3840 chr5 181538259 + 8227474 8227518 MLT1B 390 + 338 382 92562 44 chain 65511 chr5 181538259 + 8259603 8260329 L1PA3long 6157 + 5430 6157 25070 530 0 1 196 chain 112835 chr5 181538259 + 8273567 8274791 L1PA2 6032 + 4810 6032 16698 1217 2 0 5 chain 288156 chr5 181538259 + 8283484 8286837 L1PA6 6164 + 2816 6161 7193 373 0 1 340 1 0 533 0 1 117 0 1 461 6 0 12 0 1 585 0 1 73 1 0 689 15 14 135 4 0 8 chain 116625 chr5 181538259 + 8377313 8378589 L1PA3long 6157 + 3887 5163 16117 1276 chain 75758 chr5 181538259 + 8378589 8379416 L1PA3long 6157 + 5164 5991 22640 827 chain 14267 chr5 181538259 + 8379416 8379574 L1PA3long 6157 + 5992 6150 63246 158 chain 5170 chr5 181538259 + 8416549 8416609 MER4A1 472 + 157 217 84820 60 chain 10284 chr5 181538259 + 8418617 8418740 L1P5 443 + 253 376 69841 123 chain 14232 chr5 181538259 + 8455577 8455932 MSTA 426 + 18 426 63285 8 0 1 63 165 214 19 0 3 100 chain 6937 chr5 181538259 + 8499596 8499708 MER44A 345 + 138 244 77824 30 16 10 66 chain 52514 chr5 181538259 + 8587303 8587932 L1PA7 6471 + 5464 6099 28725 149 4 1 7 0 8 80 0 1 389 chain 39878 chr5 181538259 + 8616609 8617064 L1PA5 6144 + 5685 6141 34757 137 0 1 318 chain 242668 chr5 181538259 + 8629958 8632845 L1PA6 6164 + 3258 6162 8407 14 1 6 138 0 12 505 0 1 436 1 5 1464 14 7 305 0 2 9 chain 23220 chr5 181538259 + 8645295 8645601 L1PA5 6144 + 5837 6144 52051 57 1 2 74 4 6 156 3 1 11 chain 137141 chr5 181538259 + 8697484 8699007 L1PA5 6144 + 4349 5872 13325 1523 chain 25568 chr5 181538259 + 8699864 8700183 L1PA7 6471 + 6139 6457 48370 119 7 8 134 2 0 57 chain 71626 chr5 181538259 + 8713288 8714092 L1PA4 6152 + 4517 5325 23632 787 0 4 17 chain 539956 chr5 181538259 + 8730856 8736988 L1PA4 6152 + 0 6149 1344 873 0 2 104 1 0 1712 1 0 492 2 0 1166 0 8 709 0 1 125 0 2 107 1 0 350 0 9 489 chain 22808 chr5 181538259 + 8742791 8743152 THE1B 368 + 0 368 52649 81 49 51 37 1 0 31 2 0 106 6 14 48 chain 121024 chr5 181538259 + 8745325 8746662 L1PA3long 6157 + 4822 6157 15345 5 3 0 996 0 1 333 chain 3107 chr5 181538259 + 8756057 8756091 MLT2B1 522 + 482 516 98723 34 chain 20688 chr5 181538259 + 8773606 8773830 L1PA4 6152 + 4211 4435 55289 224 chain 110474 chr5 181538259 + 8773830 8775055 L1PA4 6152 + 4925 6146 17011 453 1 0 520 2 1 235 2 0 12 chain 6020 chr5 181538259 + 8841286 8841356 LTR12D 1347 + 1128 1198 81000 70 chain 92995 chr5 181538259 + 8931427 8932469 L1PA5 6144 + 4910 5959 19179 182 0 1 546 1 7 313 chain 75627 chr5 181538259 + 8937741 8938708 LTR5_Hs 974 + 0 974 22684 130 0 1 158 0 1 177 0 1 188 1 0 163 8 15 17 22 20 103 chain 19344 chr5 181538259 + 8978432 8978853 MSTA 426 + 6 426 57186 21 5 6 36 34 35 57 6 7 38 59 63 14 23 13 102 0 2 26 chain 8586 chr5 181538259 + 8995178 8995294 THE1B-int 1605 + 1485 1599 73475 65 4 2 47 chain 109365 chr5 181538259 + 9079164 9080550 L1PA7 6471 + 3060 6470 17134 394 0 2021 57 0 1 64 4 0 24 1 0 442 6 5 228 12 13 8 0 4 127 7 10 12 chain 120836 chr5 181538259 + 9084738 9086277 THE1B-int 1605 + 17 1600 15370 96 7 10 309 0 25 623 0 1 305 5 20 194 chain 20749 chr5 181538259 + 9095130 9095403 L1PA7 6471 + 6194 6466 55434 116 1 0 4 3 0 5 6 9 138 chain 56661 chr5 181538259 + 9159450 9160162 L1PA8A 6298 + 5574 6290 27372 80 0 3 84 1 2 440 18 18 89 chain 307638 chr5 181538259 + 9259624 9262908 L1HS 6032 + 2747 6031 6671 3284 chain 503765 chr5 181538259 + 9271588 9277967 L1PA7 6471 + 0 6468 3004 24 0 10 176 0 3 23 8 18 360 25 21 69 3 0 34 5 15 104 35 39 6 4 0 17 0 1 319 0 2 100 4 5 51 0 3 162 10 31 141 1 2 26 1 0 287 1 0 83 0 1 535 1 0 41 0 4 134 1 4 35 0 4 1099 0 1 11 4 1 138 0 1 116 3 4 48 0 1 56 0 21 334 0 2 313 10 6 36 0 4 34 3 1 497 2 0 96 1 0 586 0 7 5 1 0 160 chain 27616 chr5 181538259 + 9399949 9400324 L1PA8 5853 + 5485 5853 45439 76 1 0 49 2 0 69 1 0 10 18 17 34 2 1 19 1 0 93 chain 27108 chr5 181538259 + 9486010 9486440 L1PA8 5853 + 5433 5853 46117 26 1 2 96 8 7 44 2 0 58 1 0 12 30 25 40 1 0 17 1 0 93 chain 5157 chr5 181538259 + 9491198 9491390 L1MC1 2226 + 2015 2185 84875 4 0 1 27 103 82 6 1 0 17 1 0 33 chain 86232 chr5 181538259 + 9576863 9577812 L1PA4 6152 + 5198 6151 20382 100 0 4 849 chain 15583 chr5 181538259 + 9579519 9579860 L1PB1 5432 + 5120 5427 61550 18 1 0 9 1 0 11 15 9 53 2 1 15 1 0 44 1 0 10 35 23 14 7 4 15 2 0 15 1 0 9 1 0 21 1 0 13 1 0 18 2 0 5 chain 49582 chr5 181538259 + 9591661 9592304 L1PA8 5853 + 5213 5849 29736 351 1 0 44 2 0 74 1 0 8 2 1 49 2 1 15 8 7 86 chain 3159 chr5 181538259 + 9681801 9681880 MER5A1 166 + 49 130 98281 28 30 32 21 chain 11550 chr5 181538259 + 9709040 9709190 L1PA8 5853 + 5705 5853 67659 35 2 1 19 1 0 93 chain 131840 chr5 181538259 + 9725125 9726752 LTR12C 1709 + 0 1709 13842 25 21 17 45 0 3 200 9 0 169 22 12 366 1 0 275 1 0 4 4 2 106 0 4 168 0 102 211 chain 120449 chr5 181538259 + 9745449 9746932 L1PA8 5853 + 4376 5853 15451 371 0 1 816 2 1 42 6 4 64 17 15 50 2 1 19 1 0 93 chain 88701 chr5 181538259 + 9753980 9754970 L1PA4 6152 + 3711 4716 19905 452 0 7 173 0 8 365 chain 6636 chr5 181538259 + 9760913 9760995 5S 121 + 7 90 78855 32 0 1 50 chain 3713 chr5 181538259 + 9796495 9796540 MER81 114 + 41 86 93510 45 chain 21886 chr5 181538259 + 9835956 9836293 THE1B 368 + 0 366 53989 40 0 15 113 1 0 18 55 70 110 chain 30475 chr5 181538259 + 9881140 9881574 L1PA10 4194 + 3722 4150 41602 11 0 2 127 9 0 37 0 3 110 0 1 69 37 34 34 chain 56736 chr5 181538259 + 9925248 9925983 MER4E1 777 + 16 769 27343 118 14 12 159 0 1 42 1 11 182 5 10 23 0 5 22 1 0 168 chain 25147 chr5 181538259 + 9949595 9949949 THE1B 368 + 0 368 49036 44 10 20 75 0 4 25 1 0 24 1 3 98 1 0 75 chain 13842 chr5 181538259 + 9972588 9972869 L1PB1 5432 + 5167 5427 63808 53 2 1 15 1 0 39 7 6 15 3 0 6 15 6 19 3 1 4 1 0 10 6 4 24 1 0 21 1 0 13 1 0 16 0 2 5 chain 11892 chr5 181538259 + 9986226 9986611 Charlie4a 502 + 46 430 67026 12 2 0 6 0 1 73 20 33 35 178 165 59 chain 514649 chr5 181538259 + 9990758 9996861 L1PA5 6144 + 0 6132 2536 135 10 24 15 0 4 592 0 1 398 10 1 718 0 1 141 0 2 128 6 5 148 2 1 203 0 22 504 1 0 121 2 1 116 1 0 4 0 1 1194 0 3 811 1 0 274 0 1 41 12 7 515 chain 497425 chr5 181538259 + 10002407 10008470 L1PA5 6144 + 0 5773 3223 304 0 2 1204 0 1 284 0 1 228 0 2 667 9 10 62 301 0 742 1 2 491 0 1 657 3 1 632 0 4 478 chain 27834 chr5 181538259 + 10005167 10005457 AluYa8 305 + 1 291 45134 290 chain 4277 chr5 181538259 + 10037981 10038029 MLT1C 463 + 360 408 89638 48 chain 9591 chr5 181538259 + 10065971 10066271 LTR12C 1709 + 769 1109 71280 68 133 173 58 24 24 17 chain 3845 chr5 181538259 + 10066271 10066318 LTR12C 1709 + 671 718 87899 47 chain 287745 chr5 181538259 + 10093950 10097406 L1PA7 6471 + 2924 6424 7208 177 7 22 349 7 15 16 1 0 11 0 7 92 1 0 21 10 11 629 1 0 805 0 1 4 1 0 124 1 0 219 0 1 186 0 3 92 0 2 104 0 9 110 0 2 488 chain 26923 chr5 181538259 + 10102223 10102655 LTR7Y 441 + 0 439 46373 103 10 0 62 63 79 79 0 1 115 chain 3684 chr5 181538259 + 10125381 10125420 MLT1C 463 + 399 438 93715 39 chain 27163 chr5 181538259 + 10131889 10132409 L1PB1 5432 + 4956 5424 46019 147 24 5 6 1 0 24 1 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26 0 1 237 0 16 59 0 3 44 6 0 114 0 1 148 1 8 63 chain 28000 chr5 181538259 + 10722105 10722498 MLT2A1 477 + 0 394 44865 48 0 2 90 0 1 21 8 12 21 8 9 101 1 0 19 1 0 59 5 0 11 chain 296920 chr5 181538259 + 10779977 10783864 L1P2 5180 + 22 3622 6927 128 2 1 96 5 4 256 1 0 8 1 0 272 1 0 5 1 0 141 0 25 318 312 8 1043 6 4 782 0 1 69 1 0 439 chain 6569 chr5 181538259 + 10793310 10793399 MER50B 698 + 608 698 79085 54 0 3 26 2 0 7 chain 324265 chr5 181538259 + 10812995 10817586 L1PA11 4918 + 3 4628 6333 28 12 10 44 4 1 13 0 1 15 0 2 11 2 0 53 9 8 22 11 8 51 0 10 36 0 1 34 0 5 49 0 1 160 0 1 7 1 2 168 0 1 115 0 38 131 1 0 376 6 4 96 0 1 309 9 6 156 0 2 102 0 3 107 4 6 10 0 1 32 2 0 7 6 12 584 0 1 72 0 1 4 0 2 387 2 0 5 1 12 205 0 1 100 0 5 51 8 0 7 5 8 298 0 3 6 0 5 49 26 24 32 57 51 36 8 1 43 4 2 77 2 1 9 0 1 43 15 14 16 0 1 31 6 10 15 82 67 15 1 0 13 2 0 11 47 33 17 chain 28001 chr5 181538259 + 10867525 10867892 MER51B 395 + 6 395 44862 239 1 0 38 7 11 6 0 2 31 1 5 17 0 13 27 chain 9758 chr5 181538259 + 10880118 10880383 L1MA8 2339 + 1902 2148 70914 18 1 0 4 6 7 28 1 0 6 20 24 20 1 0 65 71 50 24 chain 18294 chr5 181538259 + 10882859 10883082 AluSp 311 + 84 302 58367 45 2 0 154 3 0 19 chain 37825 chr5 181538259 + 10884047 10884536 L1PA7 6471 + 6024 6469 36187 150 40 0 285 4 0 10 chain 162670 chr5 181538259 + 10925475 10927423 L1PA6 6164 + 1037 6160 11565 302 8 3177 192 1 0 332 0 1 309 0 4 185 0 1 462 18 19 139 chain 45380 chr5 181538259 + 10931033 10931586 HERVL-int 5654 + 4017 4574 31374 74 0 2 11 0 1 464 0 1 4 chain 51358 chr5 181538259 + 10940813 10941444 L1PA8 5853 + 5227 5853 29092 319 0 1 17 1 0 44 2 0 57 0 1 13 1 0 16 2 0 65 1 0 93 chain 30536 chr5 181538259 + 10952835 10953348 L1PB1 5432 + 4934 5420 41535 169 1 4 7 1 0 20 1 0 13 1 0 10 6 2 61 2 1 16 1 0 40 12 11 10 13 0 29 28 23 23 1 0 18 1 0 29 chain 24892 chr5 181538259 + 10959764 10960119 THE1B 368 + 2 368 49453 42 0 15 90 24 23 19 0 2 9 4 0 92 1 0 74 chain 12478 chr5 181538259 + 10962165 10962318 LTR18B 584 + 0 153 66022 153 chain 108398 chr5 181538259 + 10979700 10981037 L1PA7 6471 + 5106 6454 17264 367 0 1 51 0 1 99 0 4 179 1 3 211 7 5 110 1 0 45 0 1 92 1 5 26 0 1 147 chain 6064 chr5 181538259 + 11027199 11027270 U6 107 + 0 70 80856 48 1 0 22 chain 27941 chr5 181538259 + 11057254 11057605 THE1B 368 + 0 348 44964 172 2 1 26 2 0 149 chain 120263 chr5 181538259 + 11057626 11059185 THE1B-int 1605 + 1 1597 15491 421 4 29 492 9 19 29 1 2 399 7 8 197 chain 9476 chr5 181538259 + 11059193 11059311 THE1B 368 + 0 118 71543 118 chain 18446 chr5 181538259 + 11059329 11059564 THE1B 368 + 136 368 58174 38 1 0 17 3 1 176 chain 58648 chr5 181538259 + 11065605 11066713 MER4E1 777 + 0 777 26774 24 4 5 71 0 1 323 311 0 107 56 20 41 1 14 39 0 1 131 chain 30040 chr5 181538259 + 11207026 11207395 L1PA7 6471 + 6100 6470 42012 356 1 2 12 chain 28886 chr5 181538259 + 11230065 11230378 L1PA2 6032 + 5717 6030 43503 313 chain 17697 chr5 181538259 + 11232799 11233111 THE1D 372 + 0 321 59010 47 3 0 20 11 12 34 1 0 67 47 59 82 chain 3592 chr5 181538259 + 11242551 11242630 MER20 218 + 96 177 94499 28 19 20 12 1 2 19 chain 142773 chr5 181538259 + 11294585 11296195 L1PA4 6152 + 3741 5353 12876 236 0 1 1270 3 4 101 chain 21452 chr5 181538259 + 11303798 11304188 THE1B 368 + 0 368 54584 111 5 6 57 26 19 7 1 0 14 0 4 6 21 29 53 7 6 16 26 0 40 chain 5740 chr5 181538259 + 11335804 11335929 MER51A 677 + 311 417 82181 33 48 29 44 chain 3765 chr5 181538259 + 11335947 11335994 MER51A 677 + 201 253 93113 7 0 5 40 chain 26463 chr5 181538259 + 11344123 11344405 AluYd8 298 + 1 283 47036 282 chain 22635 chr5 181538259 + 11454146 11454430 AluSc 308 + 7 289 52934 271 3 1 10 chain 14090 chr5 181538259 + 11517595 11517788 L1PA8 5853 + 5665 5853 63471 17 1 0 13 2 0 45 2 1 19 1 0 93 chain 23320 chr5 181538259 + 11536373 11536846 L1PB1 5432 + 4963 5404 51902 140 17 15 20 1 0 4 4 3 12 6 2 9 2 0 52 2 1 12 8 7 41 1 0 15 24 12 16 31 26 20 1 0 22 2 1 11 chain 28817 chr5 181538259 + 11610969 11611343 THE1C 375 + 0 374 43602 118 1 0 158 2 3 27 0 1 43 1 0 24 chain 2911 chr5 181538259 + 11615234 11615265 MADE1 96 + 56 87 100750 31 chain 12235 chr5 181538259 + 11623584 11623789 L1PREC2 3366 + 323 528 66409 31 0 1 4 1 0 46 17 16 44 5 6 57 chain 11599 chr5 181538259 + 11675979 11676118 L1P3 4156 + 936 1075 67569 139 chain 25800 chr5 181538259 + 11690489 11690772 AluYb8 318 + 38 318 48011 94 3 0 186 chain 181712 chr5 181538259 + 11739556 11741724 L1PA6 6164 + 4012 6160 10511 113 0 4 229 4 8 952 0 5 23 0 10 3 42 0 628 1 0 173 chain 17647 chr5 181538259 + 11741839 11742193 L1PB1 5432 + 5103 5424 59067 11 1 0 24 1 0 8 1 0 5 11 7 10 2 0 52 2 1 15 1 0 44 1 0 16 1 0 4 3 0 11 8 0 15 3 1 5 1 0 14 2 0 17 8 7 21 1 0 12 2 1 10 1 0 10 chain 19699 chr5 181538259 + 11774348 11774559 L1PA2 6032 + 5817 6028 56785 211 chain 25001 chr5 181538259 + 11803057 11803338 AluSc5 308 + 18 299 49280 281 chain 27235 chr5 181538259 + 11872777 11873110 L1PA7 6471 + 5233 5575 45915 74 4 9 244 0 4 11 chain 13281 chr5 181538259 + 11922966 11923166 THE1D-int 1627 + 1452 1622 64661 99 34 4 67 chain 12593 chr5 181538259 + 11972234 11972367 AluYb8 318 + 183 316 65808 133 chain 92592 chr5 181538259 + 11994929 11996090 L1PA7 6471 + 5279 6457 19259 40 22 23 139 0 1 11 0 5 123 11 10 252 0 1 418 1 0 5 8 9 81 1 11 49 chain 7786 chr5 181538259 + 12032227 12032419 THE1D-int 1627 + 1420 1604 75403 29 9 7 24 11 15 13 7 0 10 1 0 36 1 0 5 20 19 26 chain 401790 chr5 181538259 + 12037034 12042457 L1PB1 5432 + 19 5420 5133 82 4 5 295 2 0 9 0 2 196 0 1 86 9 8 59 0 2 620 2 3 22 25 7 55 0 9 388 1 2 146 7 12 195 0 1 38 0 1 4 3 2 229 3 4 110 0 5 6 15 10 208 2 1 771 0 1 21 9 0 64 3 4 16 3 12 382 1 0 367 13 18 130 3 0 100 0 4 70 5 13 145 4 0 143 1 0 14 3 0 19 1 0 10 1 0 12 4 0 9 2 0 30 0 1 22 3 2 11 20 19 25 90 68 6 0 3 16 1 0 21 1 0 13 1 0 16 chain 17076 chr5 181538259 + 12087651 12087888 L1PB3 3668 + 3215 3450 59728 75 1 0 96 6 5 59 chain 4332 chr5 181538259 + 12107409 12107470 MER2 342 + 80 142 89276 29 1 2 31 chain 170862 chr5 181538259 + 12125658 12127879 L1P2 5180 + 2 2224 11060 148 1 0 34 5 1 9 1 0 53 17 16 252 2 1 47 3 5 216 1 16 11 17 0 84 4 8 459 9 10 527 0 2 6 1 2 42 0 1 272 chain 200800 chr5 181538259 + 12129169 12131633 L1PA6 6164 + 3746 6162 9696 158 0 2 57 0 1 359 0 1 4 0 1 431 0 20 1038 76 1 156 1 2 170 0 1 14 chain 21208 chr5 181538259 + 12152186 12152467 L1P3 4156 + 3677 3941 54872 23 17 0 241 chain 513396 chr5 181538259 + 12153232 12159648 L1PA7 6471 + 19 6464 2606 129 0 6 6 18 12 65 15 25 149 0 1 202 0 1 75 29 28 205 0 1 65 0 2 397 5 8 185 7 9 913 0 2 135 0 1 253 0 3 600 1 0 32 6 1 140 0 7 264 0 1 889 5 6 458 0 2 286 1 0 38 5 8 58 1 2 249 4 0 526 chain 45487 chr5 181538259 + 12210532 12211311 L1MA5A 2387 + 1569 2301 31312 67 1 0 52 1 0 4 0 1 32 6 0 6 33 32 15 11 13 80 2 1 114 1 0 47 1 0 35 2 1 39 1 0 47 2 0 30 1 0 27 53 21 63 1 0 5 chain 177534 chr5 181538259 + 12252506 12254453 L1PA2 6032 + 4094 6032 10702 520 9 0 1418 chain 49825 chr5 181538259 + 12294245 12294846 MER11D 897 + 269 897 29627 98 9 13 214 0 23 280 chain 4200 chr5 181538259 + 12313729 12313782 L1MB1 2102 + 1954 2007 90119 53 chain 25234 chr5 181538259 + 12327903 12328230 THE1B 368 + 0 341 48892 44 0 15 113 1 0 65 1 0 48 0 1 55 chain 7919 chr5 181538259 + 12329230 12329542 L1MB8 1703 + 73 422 75076 49 126 159 4 1 0 33 0 4 19 50 51 30 chain 43632 chr5 181538259 + 12330953 12331573 LTR9B 643 + 5 630 32363 60 0 3 115 1 2 19 1 3 7 0 2 207 14 16 30 0 1 4 3 1 110 2 0 12 8 6 27 chain 6928 chr5 181538259 + 12335031 12335131 LTR59 565 + 399 493 77856 23 5 0 33 1 0 38 chain 2537 chr5 181538259 + 12357015 12357119 MER33 330 + 180 281 103460 28 61 58 15 chain 23396 chr5 181538259 + 12374108 12374394 L1PA5 6144 + 5858 6144 51765 286 chain 143130 chr5 181538259 + 12449780 12451480 L1PA7 6471 + 4755 6464 12849 441 1 0 427 0 4 459 0 5 228 1 2 143 chain 173103 chr5 181538259 + 12453184 12455103 L1P1 4361 + 2411 4328 10948 1740 1 0 154 1 0 23 chain 43723 chr5 181538259 + 12460854 12461412 LTR10E 629 + 0 561 32304 8 0 1 5 1 0 150 0 2 62 0 2 64 6 5 262 chain 10051 chr5 181538259 + 12490211 12490322 LTR7Y 441 + 330 441 70299 111 chain 250861 chr5 181538259 + 12490322 12493445 HERVH-int 3825 + 0 3482 8205 159 1 7 323 2 0 11 37 31 39 2 1 9 1 0 24 29 0 15 1 0 12 12 70 55 0 1 7 12 17 689 0 35 180 3 31 299 0 10 187 0 3 42 0 1 230 5 48 365 1 0 219 4 214 148 chain 36524 chr5 181538259 + 12494047 12494480 LTR7Y 441 + 0 403 37065 165 31 0 158 0 1 79 chain 59013 chr5 181538259 + 12534513 12535159 L1PA3long 6157 + 5511 6157 26661 646 chain 10107 chr5 181538259 + 12548946 12549160 MER30 238 + 0 227 70186 16 33 21 21 10 12 29 10 0 14 1 34 80 chain 138225 chr5 181538259 + 12575843 12577469 L1PA5 6144 + 4486 6144 13244 157 0 10 106 1 23 510 2 6 85 1 0 453 1 0 296 3 1 11 chain 15234 chr5 181538259 + 12632712 12632911 AluSp 311 + 82 286 61995 153 14 18 17 0 1 15 chain 26126 chr5 181538259 + 12640112 12640428 L1PA7 6471 + 6119 6465 47522 41 0 34 264 4 0 7 chain 11895 chr5 181538259 + 12662374 12662891 LTR12C 1709 + 772 1541 67021 65 1 0 20 80 2 50 258 589 43 chain 2061 chr5 181538259 + 12662977 12663000 LTR12C 1709 + 1494 1517 106005 23 chain 7946 chr5 181538259 + 12685728 12685824 MLT2B2 565 + 0 96 75009 96 chain 49145 chr5 181538259 + 12796175 12796866 LTR12 884 + 2 884 29887 23 1 0 27 0 2 24 26 1 186 0 113 85 9 8 77 0 103 97 0 8 67 8 0 61 chain 2109 chr5 181538259 + 12796250 12796276 LTR12 884 + 185 211 60946 26 chain 57341 chr5 181538259 + 12904474 12905220 HERVL-int 5654 + 1648 2406 27147 165 0 1 138 1 0 5 11 14 108 5 14 313 chain 26069 chr5 181538259 + 12927190 12927498 L1PA7 6471 + 6163 6468 47626 146 1 0 150 2 0 9 chain 83751 chr5 181538259 + 12939815 12940760 L1PA4 6152 + 5201 6152 20861 100 0 1 839 0 5 6 chain 7583 chr5 181538259 + 12972836 12972928 MER85 139 + 0 92 75902 92 chain 174453 chr5 181538259 + 12990266 12992196 L1PA3long 6157 + 4215 6152 10871 1094 0 7 836 chain 4276 chr5 181538259 + 13084288 13084362 LTR32 486 + 255 364 89646 30 14 49 30 chain 53431 chr5 181538259 + 13113716 13114368 L1PA7 6471 + 5814 6470 28417 323 0 1 173 2 3 142 0 2 12 chain 96708 chr5 181538259 + 13124641 13125928 L1PA8 5853 + 4552 5853 18691 200 12 7 33 0 16 197 3 7 58 12 14 340 0 1 96 0 3 40 1 0 44 2 0 67 5 4 13 1 0 48 2 1 19 1 0 93 chain 6066 chr5 181538259 + 13130460 13130542 L1PA8 5853 + 5166 5251 80850 23 0 3 59 chain 33654 chr5 181538259 + 13130542 13130960 L1PA8 5853 + 5256 5675 38961 308 1 0 44 2 0 6 8 12 49 chain 5204 chr5 181538259 + 13130976 13131041 L1PA8 5853 + 5693 5757 84659 51 1 0 13 chain 6637 chr5 181538259 + 13131047 13131137 L1PA8 5853 + 5762 5853 78851 15 1 0 6 0 3 12 1 0 55 chain 71423 chr5 181538259 + 13137039 13137823 L1PA3long 6157 + 4829 5611 23670 166 1 0 389 1 0 227 chain 89672 chr5 181538259 + 13152693 13153847 L1PA8A 6298 + 5139 6292 19732 69 2 3 4 1 0 230 3 0 90 3 4 341 12 13 399 chain 15673 chr5 181538259 + 13195742 13195963 MLT2A1 477 + 217 470 61433 168 8 0 8 2 42 35 chain 423136 chr5 181538259 + 13195977 13201526 HERVL-int 5654 + 13 5654 4837 143 0 1 53 5 25 184 0 2 141 0 9 84 1 0 7 2 1 20 1 0 17 1 0 6 0 5 75 0 1 83 0 5 85 0 1 381 0 1 253 0 4 128 19 23 45 10 11 172 1 0 357 18 0 691 17 21 391 8 33 122 1 0 349 0 4 106 1 0 3 0 10 167 0 1 133 9 13 201 0 4 169 0 5 14 13 0 7 7 20 311 3 0 102 15 7 6 0 1 36 4 5 63 6 8 89 6 18 39 0 3 26 0 1 4 7 4 131 chain 30381 chr5 181538259 + 13201526 13201914 MLT2A1 477 + 0 385 41690 169 4 1 215 chain 47896 chr5 181538259 + 13210266 13210794 L1PA2 6032 + 5495 6022 30329 275 1 0 252 chain 29398 chr5 181538259 + 13244782 13245253 LTR12C 1709 + 660 1047 42743 177 1 0 21 62 0 171 26 5 13 chain 3376 chr5 181538259 + 13244981 13245043 LTR12C 1709 + 899 977 62511 21 0 16 41 chain 5086 chr5 181538259 + 13253959 13254020 MLT2C2 476 + 41 102 85221 61 chain 106153 chr5 181538259 + 13313263 13315270 L1PA8 5853 + 4063 5853 17551 277 5 3 58 35 10 62 1 7 6 6 0 49 9 8 123 1 0 290 1 3 12 9 0 16 0 4 18 0 2 71 0 2 13 488 304 130 1 0 33 1 0 18 0 4 24 8 6 62 21 18 44 2 1 19 1 0 93 chain 62870 chr5 181538259 + 13341627 13342469 L1PA11 4918 + 3498 4358 25660 165 1 2 58 0 1 87 13 15 23 0 1 3 0 2 109 4 3 267 6 13 34 0 1 31 6 10 35 chain 15765 chr5 181538259 + 13412376 13412642 MER50 708 + 440 686 61333 30 27 26 61 28 8 50 0 1 70 chain 565828 chr5 181538259 + 13416497 13422525 L1HS 6032 + 0 6031 73 5184 0 3 844 chain 35013 chr5 181538259 + 13437676 13438067 L1PA3long 6157 + 5757 6150 38012 205 0 2 186 chain 5086 chr5 181538259 + 13469747 13469809 LTR16B1 483 + 251 313 85222 62 chain 23597 chr5 181538259 + 13473802 13474136 THE1B 368 + 0 346 51441 44 6 21 104 1 0 31 2 0 87 7 6 12 0 1 40 chain 118220 chr5 181538259 + 13474158 13475686 THE1B-int 1605 + 0 1605 15846 185 1 2 167 2 0 78 3 28 19 1 2 5 0 50 139 0 3 310 4 1 393 0 1 216 0 1 5 chain 26450 chr5 181538259 + 13475686 13476036 THE1B 368 + 0 368 47054 44 0 15 49 4 3 58 1 0 16 1 7 101 1 0 75 chain 25842 chr5 181538259 + 13517108 13517490 MLT2A1 477 + 13 390 47951 30 3 4 95 0 1 25 1 5 17 1 0 51 17 8 73 2 1 67 chain 4130 chr5 181538259 + 13525509 13525556 LTR8A 794 + 735 782 90576 47 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1 0 40 0 3 24 1 0 216 24 0 181 1 0 36 1 0 39 1 0 47 2 0 14 2 0 5 0 2 11 5 0 28 3 0 15 28 0 15 0 2 48 chain 276931 chr5 181538259 + 13795031 13798210 L1PA6 6164 + 2981 6158 7522 188 1 3 13 2 0 5 0 2 663 0 1 1458 3 0 17 1 2 806 3 0 19 chain 25791 chr5 181538259 + 13826363 13828073 THE1C 375 + 0 375 48029 87 0 1 6 0 1 13 9 10 68 1348 10 27 0 1 125 1 0 26 chain 11188 chr5 181538259 + 13826556 13826715 THE1C 375 + 195 354 68264 32 6 7 116 1 0 4 chain 17996 chr5 181538259 + 13827485 13827697 THE1C-int 1605 + 1388 1600 58656 212 chain 5113 chr5 181538259 + 13827702 13827771 THE1C 375 + 0 70 85091 50 0 1 19 chain 4344 chr5 181538259 + 13827836 13827883 THE1C 375 + 139 186 89218 47 chain 452824 chr5 181538259 + 13852473 13858578 L1PA7 6471 + 403 6469 4311 399 1 2 63 3 2 120 0 1 232 0 1 940 0 4 348 4 6 329 627 0 653 1 0 220 9 140 154 0 1 145 12 16 21 0 1 370 1 0 7 0 1 616 0 1 153 0 1 95 1 444 563 0 1 6 2 0 10 chain 18749 chr5 181538259 + 13867230 13867591 THE1D 372 + 20 370 57845 36 52 35 32 5 9 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L1PA7 6471 + 5489 6452 22037 135 0 1 4 1 2 77 0 3 25 0 1 8 0 2 263 0 2 131 318 0 127 1 2 180 chain 25144 chr5 181538259 + 14409559 14409857 AluY 311 + 7 305 49042 125 0 1 28 1 0 144 chain 10037 chr5 181538259 + 14551551 14551672 LTR40a 516 + 382 503 70338 121 chain 15059 chr5 181538259 + 14554290 14554652 THE1B 368 + 0 368 62193 19 1 2 86 31 32 38 23 16 10 27 39 53 41 40 33 chain 13544 chr5 181538259 + 14569770 14569953 MER30 238 + 46 238 64262 43 0 1 23 4 15 71 3 0 39 chain 5487 chr5 181538259 + 14577903 14577974 LTR12C 1709 + 997 1068 83284 71 chain 27996 chr5 181538259 + 14600039 14600398 THE1C 375 + 0 368 44871 46 0 7 77 5 9 25 1 0 186 1 0 18 chain 9205 chr5 181538259 + 14657283 14657392 L1PA8 5853 + 5745 5853 72116 15 1 0 93 chain 8936 chr5 181538259 + 14682367 14682495 Tigger1 2417 + 2111 2238 72702 103 11 10 14 chain 37056 chr5 181538259 + 14734075 14734515 LTR10F 562 + 0 554 36705 116 0 115 63 1 0 260 chain 34644 chr5 181538259 + 14804987 14805582 MLT2A1 477 + 0 477 38258 142 0 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3831 chain 169171 chr5 181538259 + 15412652 15415480 L1PB1 5432 + 3029 5424 11146 696 2 0 128 9 5 50 0 1 117 15 4 175 7 9 93 1 0 72 1 0 5 3 4 97 12 13 10 0 7 99 19 16 83 0 1 95 3 6 213 0 1 54 476 75 9 2 0 52 1 0 18 2 0 45 1 0 14 3 0 7 18 9 15 8 5 14 2 0 24 1 0 21 1 0 13 2 1 15 1 0 4 chain 39683 chr5 181538259 + 15458106 15458656 MLT2A2 560 + 0 560 34902 153 28 27 28 1 0 184 0 1 4 5 16 147 chain 14735 chr5 181538259 + 15476296 15476530 L1PA8 5853 + 5623 5853 62624 59 1 0 3 8 0 8 6 13 34 2 1 19 1 0 93 chain 7667 chr5 181538259 + 15476617 15476709 L1PA8 5853 + 5760 5853 75712 38 0 1 54 chain 26431 chr5 181538259 + 15477839 15478197 THE1B 368 + 0 368 47083 44 0 15 113 1 0 28 13 9 159 chain 31869 chr5 181538259 + 15478273 15478713 THE1B-int 1605 + 1123 1594 40441 238 8 17 60 1 2 14 7 28 112 chain 28255 chr5 181538259 + 15516558 15516987 THE1C 375 + 0 375 44474 58 51 1 57 7 4 230 1 0 25 chain 23382 chr5 181538259 + 15644177 15644483 AluSp 311 + 1 290 51794 131 24 7 151 chain 24016 chr5 181538259 + 15645208 15645684 MER4A1 472 + 0 472 50770 180 25 25 13 144 140 114 chain 65620 chr5 181538259 + 15811626 15812504 L1PA8 5853 + 4981 5853 25051 25 3 4 72 1 3 9 1 0 468 1 0 44 5 2 70 2 1 8 0 1 4 3 1 11 1 0 4 0 1 27 6 5 19 1 0 93 chain 113934 chr5 181538259 + 15813207 15814569 L1PA7 6471 + 5091 6457 16555 531 2 0 78 2 3 609 8 9 92 1 5 39 chain 24496 chr5 181538259 + 15832817 15833177 THE1B 368 + 0 368 50029 169 1 0 29 35 45 77 2 1 47 chain 23725 chr5 181538259 + 15840586 15840867 AluSc 308 + 20 301 51238 281 chain 466913 chr5 181538259 + 15870703 15876411 L1PA7 6471 + 692 6470 3933 137 9 10 362 0 12 505 1 11 47 0 1 38 0 5 340 0 4 39 0 2 88 0 6 100 1 13 36 27 9 184 2 1 63 0 2 114 0 1 384 0 19 259 3 2 11 1 0 113 1 0 346 2 0 44 1 0 350 0 3 323 0 4 515 0 1 187 0 10 228 1 0 77 0 2 504 0 3 254 2 0 9 chain 11190 chr5 181538259 + 15925865 15926062 MER47A 366 + 70 269 68261 112 44 46 41 chain 4022 chr5 181538259 + 15940425 15940501 MADE1 96 + 0 96 91296 22 4 23 24 4 5 22 chain 6228 chr5 181538259 + 16050782 16050863 MER57E1 380 + 188 269 80247 81 chain 4240 chr5 181538259 + 16074466 16074515 L1PB 1623 + 117 166 89874 49 chain 14824 chr5 181538259 + 16092513 16092743 L1PA8 5853 + 5619 5853 62488 57 2 3 11 1 0 50 2 1 13 7 6 28 0 7 52 1 0 6 chain 126044 chr5 181538259 + 16111148 16112728 THE1B-int 1605 + 0 1605 14547 430 0 25 59 0 1 115 10 8 804 0 1 147 1 0 4 0 1 10 chain 37754 chr5 181538259 + 16189378 16189793 L1PA5 6144 + 5715 6130 36240 415 chain 9909 chr5 181538259 + 16191752 16191942 MER31A 484 + 0 183 70601 92 16 5 18 18 21 13 7 8 26 chain 315105 chr5 181538259 + 16197679 16201890 L1PA11 4918 + 292 4486 6502 89 5 8 52 0 2 45 13 14 194 1 2 326 16 1 85 1 5 189 0 1 91 0 5 319 17 2 90 5 2 446 1 5 33 3 6 416 7 1 18 5 6 201 0 1 55 0 1 430 2 1 251 0 1 216 0 1 90 0 1 337 13 9 52 3 2 81 2 0 11 chain 30307 chr5 181538259 + 16255336 16255738 MSTA-int 1630 + 1227 1630 41753 347 25 26 30 chain 10043 chr5 181538259 + 16270436 16270633 L1MA1 4479 + 4008 4190 70320 63 8 7 29 7 5 30 1 0 10 1 0 4 3 0 16 8 1 17 chain 79374 chr5 181538259 + 16290482 16291372 L1PA4 6152 + 5252 6141 21768 441 1 0 448 chain 5635 chr5 181538259 + 16333386 16333476 L1MC1 2226 + 505 793 82624 8 6 0 61 0 204 15 chain 551872 chr5 181538259 + 16335410 16341432 L1PA2 6032 + 1 6024 612 73 0 1 181 1 0 3562 0 1 198 0 1 1758 1 0 248 chain 87170 chr5 181538259 + 16352532 16353679 L1PA11 4918 + 3322 4472 20197 359 11 12 460 7 8 232 2 1 12 1 0 12 9 12 42 chain 77117 chr5 181538259 + 16359192 16360167 L1PA8 5853 + 4887 5853 22282 119 1 0 3 6 0 75 0 2 119 0 1 151 0 1 162 0 1 43 10 9 36 2 0 73 1 0 6 1 0 52 2 1 19 1 0 93 chain 30443 chr5 181538259 + 16419968 16420373 LTR7 482 + 0 477 41633 69 8 46 109 0 1 33 0 1 4 1 32 12 0 1 169 chain 260081 chr5 181538259 + 16420380 16423756 HERVH-int 3825 + 0 3824 7967 247 0 1 85 1 0 43 0 4 152 5 0 7 1 0 6 0 1 24 1 0 9 2 1 12 22 12 15 23 37 30 2 0 11 1 0 14 65 0 68 0 1 4 2 0 369 0 2 74 16 1 199 9 0 29 0 2 10 1 0 215 4 31 290 0 4 127 0 3 303 5 6 55 0 290 4 1 0 272 9 11 37 2 211 269 0 2 224 chain 30395 chr5 181538259 + 16425015 16425413 LTR7 482 + 0 469 41679 69 8 46 79 0 1 6 1 0 23 0 1 33 0 32 179 chain 113632 chr5 181538259 + 16436001 16437437 LTR12C 1709 + 0 1709 16601 189 28 29 183 0 1 85 5 6 156 0 280 183 1 0 5 3 1 106 11 4 76 0 1 322 1 0 82 chain 12673 chr5 181538259 + 16583955 16584276 L1PB1 5432 + 5127 5422 65670 9 1 0 8 1 0 13 6 2 9 2 0 52 2 1 15 1 0 41 83 70 23 1 0 22 15 13 17 chain 80345 chr5 181538259 + 16610469 16611408 L1PA5 6144 + 5195 6144 21564 188 4 6 470 0 3 23 1 0 238 1 7 14 chain 24132 chr5 181538259 + 16703604 16703909 AluSc 308 + 8 308 50602 49 4 0 8 1 0 243 chain 25613 chr5 181538259 + 16706922 16707285 THE1B 368 + 0 368 48296 5 0 1 162 1 0 30 0 3 6 3 7 14 18 16 124 chain 130328 chr5 181538259 + 16717768 16719330 LTR12C 1709 + 0 1709 13998 104 5 4 201 0 1 4 1 0 523 1 0 154 0 41 79 1 0 6 2 0 107 0 4 53 7 13 149 0 101 165 chain 25818 chr5 181538259 + 16765126 16765522 MLT2A1 477 + 0 463 47992 33 0 5 41 0 16 19 1 0 5 0 1 22 0 1 7 15 27 208 28 60 13 0 1 4 chain 4524 chr5 181538259 + 16789107 16789273 MER58A 224 + 5 183 88191 15 13 18 42 76 83 20 chain 51633 chr5 181538259 + 16831078 16831858 L1PB1 5432 + 4673 5418 28989 65 0 1 364 1 2 9 5 0 24 1 0 9 1 0 11 5 1 10 3 1 50 2 1 10 7 6 43 1 0 14 16 3 30 2 0 5 1 0 14 2 0 23 3 2 21 1 0 12 1 0 14 chain 11400 chr5 181538259 + 16847764 16847904 FAM 185 + 25 165 67912 140 chain 4035 chr5 181538259 + 16870456 16870521 MER5A1 166 + 78 145 91203 11 0 1 4 5 6 45 chain 11161 chr5 181538259 + 16911387 16912179 MER30 238 + 41 235 68322 64 620 27 16 10 5 82 chain 3723 chr5 181538259 + 16938062 16938104 L1MC2 1988 + 1871 1913 93451 42 chain 4109 chr5 181538259 + 16940795 16940974 L1MA3 4352 + 4134 4299 90707 32 0 1 16 105 92 7 1 0 6 1 0 11 chain 3201 chr5 181538259 + 16949546 16949701 MER58A 224 + 0 163 97887 16 103 111 36 chain 5403 chr5 181538259 + 16975437 16975505 MLT1A0 366 + 274 342 83695 68 chain 36794 chr5 181538259 + 17025602 17026056 L1PA5 6144 + 5697 6144 36888 114 2 1 43 1 0 145 6 1 143 chain 3020 chr5 181538259 + 17027651 17027683 LTR23 429 + 311 343 99645 32 chain 64319 chr5 181538259 + 17028040 17028983 L1PA13 3608 + 2534 3468 25345 110 0 1 24 0 1 5 1 0 14 2 0 59 6 8 50 0 2 11 4 7 178 0 2 117 6 5 7 1 0 24 1 0 114 2 0 61 1 0 46 7 6 10 2 0 20 7 2 24 9 6 20 chain 12240 chr5 181538259 + 17034323 17034504 THE1D 372 + 191 372 66395 19 13 14 116 1 0 32 chain 16018 chr5 181538259 + 17062659 17062948 LTR12C 1709 + 930 1183 61008 63 0 1 118 41 8 13 30 26 24 chain 51210 chr5 181538259 + 17068274 17069016 MER4E1 777 + 0 777 29164 54 1 5 16 0 1 256 1 20 81 0 1 42 0 2 64 1 9 35 9 0 67 18 14 33 23 36 41 chain 35874 chr5 181538259 + 17083282 17083697 LTR12C 1709 + 3 429 37487 211 0 2 72 1 10 131 chain 5494 chr5 181538259 + 17104972 17105037 MER41B 635 + 482 547 83262 65 chain 31189 chr5 181538259 + 17112338 17112809 LTR12F 595 + 0 595 40983 70 43 1 32 6 1 24 1 107 52 7 71 43 0 1 193 chain 25122 chr5 181538259 + 17140337 17140629 AluSp 311 + 11 303 49085 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19404950 19405150 MER44A 345 + 120 317 64190 37 0 1 16 0 4 73 3 0 9 3 0 9 2 0 48 chain 38393 chr5 181538259 + 19408840 19409307 L1PA7 6471 + 6000 6470 35790 63 0 1 72 0 1 176 0 1 8 0 1 4 1 0 143 chain 49129 chr5 181538259 + 19416409 19416998 L1PA7 6471 + 5877 6466 29895 430 12 12 147 chain 83428 chr5 181538259 + 19506965 19507905 L1PA4 6152 + 5201 6141 20925 940 chain 41695 chr5 181538259 + 19518365 19518908 MLT2A2 560 + 2 560 33555 58 0 1 134 0 3 5 0 1 87 1 2 109 0 11 58 3 1 88 chain 4513 chr5 181538259 + 19568742 19568797 MLT1A 405 + 299 354 88247 55 chain 24735 chr5 181538259 + 19600055 19600361 L1PA5 6144 + 5838 6144 49674 149 1 3 76 0 1 59 1 0 9 2 0 9 chain 2847 chr5 181538259 + 19637571 19637601 MER31B 477 + 99 129 101262 30 chain 3380 chr5 181538259 + 19660918 19660960 MLT1E3 631 + 588 630 96305 42 chain 30429 chr5 181538259 + 19701739 19702138 MER84 505 + 0 399 41650 133 1 0 4 1 2 260 chain 30444 chr5 181538259 + 19702711 19703193 MER9a3 513 + 0 513 41632 18 0 2 64 26 27 68 10 11 68 0 17 18 2 12 103 26 30 8 4 0 67 chain 363754 chr5 181538259 + 19703884 19708459 HERVK9-int 4720 + 335 4717 5755 7 1 0 4 0 1 178 2 3 571 0 1 502 3 7 659 0 4 424 0 1 602 0 1 4 1 0 586 206 0 117 1 2 231 1 0 465 0 2 10 chain 36061 chr5 181538259 + 19708464 19708946 MER9a3 513 + 0 513 37379 18 0 2 91 0 1 67 0 1 78 0 17 21 0 10 115 0 1 8 6 7 8 2 0 68 chain 141463 chr5 181538259 + 19761581 19763239 L1PA6 6164 + 4493 6146 12985 822 1 0 45 0 2 87 11 4 7 0 1 685 chain 49123 chr5 181538259 + 19812702 19813297 L1PA7 6471 + 5843 6467 29899 93 0 30 75 1 0 426 chain 47469 chr5 181538259 + 19834868 19835454 L1PA8A 6298 + 5677 6291 30485 421 0 2 89 0 9 49 0 17 27 chain 46192 chr5 181538259 + 19836858 19837424 L1PA7 6471 + 5902 6469 30964 14 0 7 392 0 1 137 1 0 5 6 0 11 chain 59077 chr5 181538259 + 19863892 19864534 L1PA3long 6157 + 5511 6153 26645 642 chain 21431 chr5 181538259 + 19867798 19868146 THE1C 375 + 0 373 54602 124 7 10 43 8 9 76 6 26 48 20 21 16 chain 3520 chr5 181538259 + 19885735 19885895 Charlie1a 1436 + 1171 1345 95107 31 100 114 29 chain 12499 chr5 181538259 + 19950175 19950491 L1PB1 5432 + 5118 5404 65987 20 1 0 6 1 0 12 2 0 3 2 0 9 12 10 42 3 1 15 1 0 43 2 1 9 59 45 12 2 0 24 1 0 23 1 0 11 chain 25898 chr5 181538259 + 19963368 19963757 THE1C 375 + 2 373 47873 46 8 0 67 7 4 62 31 25 144 1 0 23 chain 197124 chr5 181538259 + 19967682 19969856 L1PA3long 6157 + 3986 6157 9804 655 2 1 1510 2 0 5 chain 41228 chr5 181538259 + 19979810 19980321 L1PB 1623 + 891 1406 33824 176 0 2 127 0 1 93 0 3 10 9 7 96 chain 94879 chr5 181538259 + 20037336 20038529 L1P3 4156 + 2933 4136 18924 221 0 1 8 0 3 380 0 4 480 10 15 55 9 7 9 1 0 20 chain 46314 chr5 181538259 + 20059544 20060132 L1PA7 6471 + 5891 6467 30917 48 1 0 4 7 8 125 12 0 391 chain 46735 chr5 181538259 + 20094724 20095299 L1PA7 6471 + 5882 6455 30754 6 3 0 105 1 0 143 0 1 176 11 12 130 chain 226810 chr5 181538259 + 20137822 20140476 L1PA5 6144 + 3490 6143 8845 19 1 0 706 0 2 25 1 0 386 1 0 546 1 0 522 4 4 289 1 2 152 chain 75769 chr5 181538259 + 20179959 20180854 MER11D 897 + 0 897 22639 269 15 13 527 0 4 84 chain 82924 chr5 181538259 + 20193165 20194297 L1PA8A 6298 + 3397 4512 21035 21 0 4 25 0 5 243 0 1 116 20 6 60 0 1 24 1 0 216 0 1 126 8 6 52 15 0 151 1 4 53 chain 114720 chr5 181538259 + 20211199 20212700 L1P2 5180 + 409 1914 16426 69 0 12 17 1 0 8 1 0 168 1 0 104 1 16 12 17 0 164 13 4 100 0 1 9 12 13 220 0 1 140 0 2 261 0 1 74 1 3 101 2 0 5 chain 37879 chr5 181538259 + 20223091 20223566 THE1B-int 1605 + 1124 1600 36158 327 4 5 144 chain 53891 chr5 181538259 + 20311130 20311804 L1PA7 6471 + 5794 6467 28259 316 0 1 186 1 2 162 3 0 6 chain 31399 chr5 181538259 + 20336754 20337169 LTR77 607 + 121 538 40814 385 9 11 21 chain 143348 chr5 181538259 + 20341639 20343479 HERVL-int 5654 + 1 1848 12829 23 4 5 157 3 1 506 11 12 153 8 13 92 1 6 241 0 1 302 5 0 49 0 1 285 chain 137091 chr5 181538259 + 20389544 20391136 L1PA4 6152 + 4546 6143 13331 807 6 7 201 21 22 323 0 3 234 chain 17621 chr5 181538259 + 20393578 20393783 L1PB3 3668 + 1906 2111 59100 205 chain 6519 chr5 181538259 + 20398977 20399053 L1PA8 5853 + 5777 5853 79270 76 chain 104622 chr5 181538259 + 20405034 20406222 L1PA5 6144 + 4581 5773 17737 47 5 4 662 0 5 474 chain 28117 chr5 181538259 + 20442927 20443231 AluYa5 310 + 0 303 44687 132 1 0 171 chain 3632 chr5 181538259 + 20499651 20499696 MER110 477 + 407 452 94168 45 chain 22059 chr5 181538259 + 20586315 20586660 L1PA8 5853 + 5506 5843 53749 15 1 0 39 1 0 50 2 0 54 4 5 10 2 1 10 8 6 42 4 3 19 2 1 82 chain 32245 chr5 181538259 + 20595379 20595756 LTR22 571 + 158 535 40154 377 chain 49873 chr5 181538259 + 20622832 20623391 L1PA3long 6157 + 5589 6150 29612 140 0 2 419 chain 94002 chr5 181538259 + 20646006 20647006 L1HS 6032 + 3265 4265 19036 1000 chain 83057 chr5 181538259 + 20725945 20726904 L1PA6 6164 + 3511 4469 21007 180 3 0 213 0 2 79 1 0 220 0 1 263 chain 25007 chr5 181538259 + 20794254 20794590 THE1B 368 + 0 348 49266 44 0 15 110 1 0 25 2 0 73 0 1 26 1 0 54 chain 26230 chr5 181538259 + 20801111 20801438 THE1A 353 + 3 330 47376 88 0 1 17 2 1 220 chain 310246 chr5 181538259 + 20814349 20818394 L1P3 4156 + 15 4096 6609 237 24 23 10 0 2 35 1 0 6 3 0 8 0 3 25 6 7 38 8 6 244 0 2 45 16 17 475 12 32 6 0 1 201 1 7 86 6 1 88 7 9 120 3 1 105 7 8 184 1 5 60 0 1 82 5 6 201 1 0 232 16 0 72 0 3 9 3 21 761 1 0 236 0 1 216 0 2 43 2 1 97 chain 17723 chr5 181538259 + 20829611 20829811 L1P3 4156 + 2878 3079 58985 145 0 1 55 chain 9253 chr5 181538259 + 20856317 20856431 THE1B 368 + 49 163 72017 114 chain 43821 chr5 181538259 + 20906981 20907653 THE1B-int 1605 + 28 695 32239 123 77 51 228 1 26 62 2 1 129 1 0 4 7 4 8 0 1 30 chain 119349 chr5 181538259 + 20988008 20989565 L1PA8 5853 + 2414 3987 15638 455 0 2 5 2 0 6 0 3 54 13 17 431 0 1 264 7 11 90 7 8 111 1 2 106 0 2 5 chain 3605 chr5 181538259 + 21023351 21023396 L1M3c 1411 + 723 768 94377 45 chain 3111 chr5 181538259 + 21082230 21082263 LTR12E 1234 + 667 700 98688 33 chain 37975 chr5 181538259 + 21083207 21083738 LTR12 884 + 0 884 36089 59 38 0 128 0 157 32 3 1 184 0 236 87 chain 24787 chr5 181538259 + 21093889 21094256 THE1D 372 + 1 367 49607 58 0 1 15 1 0 25 9 7 83 3 5 24 6 6 115 1 0 27 chain 559128 chr5 181538259 + 21107412 21113430 L1PA2 6032 + 1 6019 198 6018 chain 7265 chr5 181538259 + 21125018 21125100 HERVL-int 5654 + 5572 5654 76784 82 chain 23341 chr5 181538259 + 21134246 21134586 THE1B 368 + 0 363 51865 44 0 15 113 4 2 18 7 5 47 7 8 67 0 10 18 0 1 15 chain 49589 chr5 181538259 + 21164924 21165482 LTR6B 557 + 0 557 29733 50 1 0 160 1 0 149 0 1 197 chain 50669 chr5 181538259 + 21167035 21167633 L1PA7 6471 + 5874 6469 29320 584 3 0 11 chain 476872 chr5 181538259 + 21225389 21231407 L1PA7 6471 + 262 6470 3698 67 11 181 242 2 1 850 0 1 396 0 2 20 0 1 35 6 5 569 14 0 74 0 4 369 0 1 404 7 2 161 0 1 6 0 1 549 1 2 15 0 4 337 5 0 7 1 6 374 1 0 140 1 2 341 5 20 171 0 6 576 0 3 206 0 1 55 chain 61025 chr5 181538259 + 21251034 21252106 MER11B 1079 + 0 1064 26097 457 64 51 15 0 1 10 10 11 31 96 97 31 1 8 8 1 0 18 69 63 16 8 9 53 0 1 40 1 2 127 2 1 14 chain 8477 chr5 181538259 + 21252683 21253045 MLT1B 390 + 23 382 73732 24 1 2 5 1 0 15 226 224 24 1 0 65 chain 25876 chr5 181538259 + 21308229 21308671 L1PA15 4387 + 3898 4326 47904 35 1 0 167 6 5 15 41 40 25 1 0 22 4 0 10 1 0 50 6 3 44 3 1 11 chain 4326 chr5 181538259 + 21342016 21342063 LTR12E 1234 + 642 689 89318 47 chain 204717 chr5 181538259 + 21357238 21359623 L1PA6 6164 + 3754 6162 9546 919 1 0 211 0 1 43 0 9 44 0 1 337 0 4 171 0 4 56 0 3 594 0 2 9 chain 62422 chr5 181538259 + 21367799 21368480 L1PA3long 6157 + 5426 6107 25770 681 chain 24955 chr5 181538259 + 21376260 21376535 L1PA3long 6157 + 5725 6000 49355 275 chain 12980 chr5 181538259 + 21376535 21376678 L1PA3long 6157 + 6001 6144 65141 143 chain 36540 chr5 181538259 + 21398021 21398502 MLT2A2 560 + 4 502 37050 54 0 1 29 0 3 308 3 14 30 7 8 21 0 1 29 chain 102449 chr5 181538259 + 21407865 21409274 L1PA8 5853 + 4426 5815 18018 50 11 0 6 0 1 12 1 5 498 20 11 114 23 24 133 0 1 280 12 11 36 2 0 74 8 6 56 1 0 16 2 1 54 chain 35824 chr5 181538259 + 21431292 21431771 L1PA8 5853 + 5262 5735 37515 302 10 9 27 1 0 8 2 0 69 24 22 36 chain 8034 chr5 181538259 + 21431784 21431891 L1PA8 5853 + 5747 5853 74794 16 1 0 90 chain 38147 chr5 181538259 + 21467712 21468128 L1HS 6032 + 5616 6030 35950 245 1 0 157 1 0 12 chain 23101 chr5 181538259 + 21470692 21470981 MLT2A2 560 + 0 292 52212 194 1 4 94 chain 20074 chr5 181538259 + 21550578 21550825 L1PA6 6164 + 5914 6162 56286 76 3 4 168 chain 110207 chr5 181538259 + 21579715 21580928 L1PA3long 6157 + 4130 5342 17053 5 1 0 1207 chain 12195 chr5 181538259 + 21593096 21593335 MSTA 426 + 159 414 66483 32 15 19 17 39 37 34 7 21 95 chain 19915 chr5 181538259 + 21611905 21612839 L1PB 1623 + 117 391 56498 71 5 4 62 653 0 15 1 0 87 5 0 35 chain 31319 chr5 181538259 + 21617098 21617467 L1PA7 6471 + 6093 6463 40874 365 0 1 4 chain 2983 chr5 181538259 + 21657272 21657312 MLT1H1 527 + 265 305 100048 10 1 0 18 0 1 11 chain 33658 chr5 181538259 + 21657925 21658289 L1PA2 6032 + 5652 6016 38959 364 chain 27506 chr5 181538259 + 21688390 21688736 THE1A 353 + 0 347 45572 26 0 1 82 2 1 190 0 1 46 chain 143841 chr5 181538259 + 21840438 21842007 L1PA3long 6157 + 4578 6146 12780 312 1 0 1256 chain 35140 chr5 181538259 + 21867385 21867849 THE1B-int 1605 + 882 1585 37932 51 34 273 353 1 0 4 0 1 21 chain 17136 chr5 181538259 + 21867860 21868176 THE1B 368 + 0 321 59657 102 14 15 60 68 73 44 1 0 27 chain 9816 chr5 181538259 + 21870279 21870402 MLT2B3 573 + 69 192 70790 123 chain 21310 chr5 181538259 + 21920393 21920677 L1PA7 6471 + 6174 6464 54751 6 0 2 100 1 0 26 1 3 5 1 0 98 0 4 46 chain 25149 chr5 181538259 + 21959953 21960283 L1PREC2 3366 + 475 814 49034 107 0 3 9 1 7 213 chain 38901 chr5 181538259 + 21994696 21995238 LTR12_ 688 + 0 688 35428 28 8 10 106 0 24 145 0 13 58 0 103 132 13 17 52 chain 190107 chr5 181538259 + 22028164 22030274 L1PA3long 6157 + 4048 6157 10107 1960 1 0 149 chain 25851 chr5 181538259 + 22060142 22060484 L1PA8 5853 + 5518 5853 47938 45 1 0 45 2 0 70 2 1 8 2 1 56 1 0 16 1 0 93 chain 61749 chr5 181538259 + 22074130 22074835 L1PA4 6152 + 4807 5516 25929 491 1 5 213 chain 283929 chr5 181538259 + 22095063 22098880 HERVH-int 3825 + 0 3825 7321 160 0 4 169 1 0 139 13 15 48 1 0 35 1 0 7 4 3 24 55 10 4 1 0 13 45 0 7 63 0 5 0 20 27 21 0 9 64 0 81 12 15 25 6 16 297 0 4 295 22 13 127 5 0 81 0 4 121 0 1 103 2 1 246 0 9 982 8 218 416 5 4 67 chain 16245 chr5 181538259 + 22108049 22108405 THE1B 368 + 0 368 60692 47 62 70 52 1 0 24 59 64 111 chain 50430 chr5 181538259 + 22113010 22113741 MER4E1 777 + 0 770 29404 16 2 0 6 12 15 81 0 1 132 1 0 44 6 5 47 1 16 34 0 10 50 6 7 26 7 8 39 7 16 186 0 3 28 chain 2821 chr5 181538259 + 22226268 22226320 MLT1E2 623 + 87 137 101521 22 11 9 19 chain 26322 chr5 181538259 + 22262838 22263122 L1PA2 6032 + 5019 5303 47237 284 chain 13341 chr5 181538259 + 22275087 22275292 L1PA8 5853 + 5651 5853 64566 29 1 0 8 9 8 7 0 1 36 2 1 19 1 0 93 chain 226049 chr5 181538259 + 22280252 22283105 L1PA7 6471 + 3337 6173 8862 958 9 8 303 0 2 347 9 8 128 23 1 125 0 4 76 0 1 4 1 0 39 1 0 261 0 4 8 8 7 176 0 1 6 0 1 330 3 0 38 chain 18673 chr5 181538259 + 22293004 22293412 LTR10B1 532 + 124 532 57927 21 75 0 14 75 150 223 chain 14659 chr5 181538259 + 22309977 22310155 L1PA7 6471 + 6287 6465 62723 178 chain 46041 chr5 181538259 + 22321153 22321656 L1PA2 6032 + 5526 6031 31040 7 0 1 37 0 1 459 chain 76674 chr5 181538259 + 22332429 22333481 L1PA8 5853 + 4809 5853 22400 200 2 0 555 1 0 35 0 1 8 2 0 70 2 1 9 1 0 50 5 4 18 1 0 21 19 19 53 chain 13371 chr5 181538259 + 22335181 22335350 THE1B 368 + 0 172 64509 14 2 0 26 0 5 127 chain 364003 chr5 181538259 + 22358956 22363072 L1PA5 6144 + 2006 6124 5754 1495 0 2 179 1 0 373 0 1 346 0 1 1628 1 0 93 chain 18294 chr5 181538259 + 22435004 22435311 MLT2A2 560 + 1 309 58368 110 0 1 56 63 61 72 0 2 6 chain 59227 chr5 181538259 + 22508208 22508970 MER4E1 777 + 0 756 26599 17 1 2 517 21 14 206 chain 3462 chr5 181538259 + 22517603 22517641 MLT2C2 476 + 438 476 95532 38 chain 11452 chr5 181538259 + 22569151 22569539 MSTA 426 + 7 420 67829 37 213 238 29 6 6 103 chain 20467 chr5 181538259 + 22606360 22606719 THE1D 372 + 0 372 55817 47 3 0 20 46 45 53 7 13 12 3 0 3 2 0 26 3 19 134 chain 249178 chr5 181538259 + 22622462 22625307 L1PA5 6144 + 3272 6135 8260 13 1 0 213 0 1 100 0 1 250 0 1 229 0 5 73 9 10 810 0 4 174 0 3 144 1 0 743 0 4 85 chain 21858 chr5 181538259 + 22674169 22674509 THE1B 368 + 2 368 54027 42 4 21 109 1 0 24 41 51 119 chain 82131 chr5 181538259 + 22674524 22675645 THE1B-int 1605 + 17 1600 21216 413 0 25 164 28 22 132 0 1 7 20 18 128 8 11 5 3 0 31 2 446 180 chain 77416 chr5 181538259 + 22720500 22721650 THE1D-int 1627 + 12 1621 22216 6 1 0 20 1 0 4 0 1 64 53 0 94 1 2 139 4 106 201 6 5 68 3 0 19 0 1 4 5 4 54 9 425 41 1 0 191 15 12 40 1 0 76 0 3 29 chain 26637 chr5 181538259 + 22775772 22776127 THE1A 353 + 0 353 46777 35 1 2 47 2 1 26 1 0 91 1 0 151 chain 2721 chr5 181538259 + 22798502 22798535 Charlie1a 1436 + 1329 1362 102185 33 chain 262550 chr5 181538259 + 22820449 22823388 L1PA4 6152 + 3201 6146 7894 66 0 1 18 0 1 1064 0 4 1276 5 5 510 chain 120724 chr5 181538259 + 22919195 22920724 L1PA8A 6298 + 4741 6291 15396 15 1 2 67 1 0 664 2 1 72 0 1 19 4 8 16 0 1 245 0 18 135 0 2 266 11 7 11 chain 182831 chr5 181538259 + 22929973 22932244 HERV9-int 5642 + 3280 5598 10447 183 0 1 364 0 13 90 0 1 43 0 1 13 0 3 289 0 1 507 4 0 184 0 14 31 1 2 79 0 24 107 1 0 125 2 1 101 8 6 34 11 9 19 1 0 56 6 5 12 chain 23967 chr5 181538259 + 22974910 22975277 LTR7B 505 + 0 441 50843 108 0 10 41 4 5 22 33 9 27 1 89 51 1 0 79 chain 13812 chr5 181538259 + 22978815 22979092 L1PB1 5432 + 5170 5422 63861 50 2 1 16 1 0 45 1 0 19 25 11 14 3 1 5 1 0 14 2 0 24 1 0 22 1 0 7 6 5 18 chain 7656 chr5 181538259 + 23000936 23001025 L1PA7 6471 + 6365 6454 75735 89 chain 18832 chr5 181538259 + 23046159 23046543 MSTA 426 + 17 405 57737 91 6 30 55 92 51 49 17 38 74 chain 19184 chr5 181538259 + 23090989 23091225 L1PA7 6471 + 6228 6467 57366 100 1 2 126 0 2 9 chain 10800 chr5 181538259 + 23115288 23115532 L1PB1 5432 + 5204 5423 68860 16 2 1 14 2 1 45 10 0 7 23 20 19 2 0 6 1 0 13 2 0 24 1 0 21 7 6 7 1 0 14 2 0 5 chain 22622 chr5 181538259 + 23169229 23169533 AluSc5 308 + 0 305 52954 38 29 30 237 chain 3812 chr5 181538259 + 23169541 23169589 MER34A1 583 + 462 514 92765 17 0 4 31 chain 496219 chr5 181538259 + 23186156 23192193 L1PA6 6164 + 0 6162 3260 275 5 25 111 2 1 494 0 4 371 0 1 619 0 1 422 1 3 528 3 131 193 5 0 6 8 5 125 1 0 388 1 0 201 0 2 601 4 0 7 0 4 155 0 1 32 3 2 85 25 0 107 1 2 251 1 2 39 0 1 267 21 22 105 0 2 335 0 1 91 1 2 136 5 0 6 chain 36392 chr5 181538259 + 23225338 23225897 LTR9B 643 + 0 583 37143 36 1 5 160 6 5 196 54 68 32 2 9 72 chain 19504 chr5 181538259 + 23322266 23322561 L1PA15 4387 + 4014 4299 57019 90 1 0 26 1 0 57 1 0 11 11 7 12 1 0 50 10 8 24 chain 32878 chr5 181538259 + 23381159 23381606 LTR7 482 + 0 469 39602 100 21 15 110 4 3 18 1 32 29 3 0 58 1 2 102 chain 20142 chr5 181538259 + 23382569 23382809 L1PA6 6164 + 5921 6162 56201 106 0 1 134 chain 2911 chr5 181538259 + 23443998 23444036 THE1D 372 + 335 372 100753 5 1 0 32 chain 40449 chr5 181538259 + 23464379 23464865 L1PA3long 6157 + 5656 6157 34348 343 12 5 15 7 29 109 chain 4595 chr5 181538259 + 23507175 23507244 L1P4a 3072 + 35 105 87817 12 1 0 7 0 4 7 2 0 40 chain 6714 chr5 181538259 + 23533071 23533152 L1P5 443 + 145 226 78590 81 chain 25532 chr5 181538259 + 23599662 23599986 L1PA8A 6298 + 5276 5604 48435 213 2 6 109 chain 3812 chr5 181538259 + 23600961 23601027 MADE1 96 + 15 94 92758 14 0 16 18 7 4 27 chain 53456 chr5 181538259 + 23636580 23637180 L1PA4 6152 + 5543 6143 28410 600 chain 20217 chr5 181538259 + 23641850 23642202 THE1B 368 + 0 342 56120 12 3 1 34 0 1 63 11 12 28 53 44 98 1 0 49 chain 76849 chr5 181538259 + 23645831 23646771 L1P2 5180 + 1540 2475 22361 188 0 1 211 5 6 135 4 3 231 10 4 156 chain 35839 chr5 181538259 + 23687774 23688259 HERVK14-int 1672 + 5 480 37503 25 1 0 11 5 0 47 1 0 49 4 3 124 0 1 35 6 5 33 2 0 142 chain 118695 chr5 181538259 + 23690942 23692332 LTR12C 1709 + 0 1709 15772 792 9 325 107 1 5 216 2 1 263 chain 101651 chr5 181538259 + 23734791 23735963 L1PA5 6144 + 4455 5632 18108 179 0 2 756 0 3 237 chain 21462 chr5 181538259 + 23741132 23741394 AluSc 308 + 30 292 54565 262 chain 11177 chr5 181538259 + 23763067 23763254 MER30 238 + 38 238 68291 56 17 32 59 10 8 45 chain 25373 chr5 181538259 + 23782291 23782665 THE1C 375 + 0 375 48661 18 2 0 88 24 24 15 0 1 28 5 8 58 1 0 135 chain 7646 chr5 181538259 + 23799303 23799408 THE1B 368 + 1 107 75757 46 5 6 54 chain 246879 chr5 181538259 + 23804640 23807835 HERVL-int 5654 + 0 4619 8306 124 0 2 427 0 1 305 7 12 35 2 23 21 1 11 191 0 1404 64 18 5 307 1 0 48 0 1 483 1 0 269 3 4 356 1 2 486 29 22 16 chain 2844 chr5 181538259 + 23847814 23847846 Tigger1 2417 + 2284 2316 101282 32 chain 46178 chr5 181538259 + 23856894 23857476 L1PA7 6471 + 2363 2930 30972 278 16 1 288 chain 134118 chr5 181538259 + 23865246 23867155 MER61-int 3695 + 0 1868 13641 26 8 12 9 1 0 145 39 0 80 1 0 54 18 34 4 0 1 27 0 1 17 16 2 52 16 3 54 5 6 115 1 0 41 0 1 150 0 1 11 14 19 184 4 0 375 0 1 120 6 7 316 chain 40260 chr5 181538259 + 23911445 23911986 L1PA7 6471 + 5953 6460 34468 34 0 3 159 29 0 286 15 7 18 chain 111610 chr5 181538259 + 23951094 23952511 LTR12C 1709 + 0 1709 16862 219 22 1 6 0 1 454 0 159 231 0 47 106 0 4 212 0 1 22 36 9 4 1 0 14 4 2 27 0 131 59 chain 4643 chr5 181538259 + 23985570 23985680 L1MA7 2200 + 2013 2105 87569 24 24 13 35 9 2 18 chain 72231 chr5 181538259 + 24030876 24031947 MER11A 1151 + 3 1144 23478 52 0 99 76 1 0 64 4 0 38 0 2 54 2 1 54 0 1 84 6 0 10 0 7 81 0 1 56 3 4 146 25 57 12 14 0 18 50 1 60 6 7 111 1 2 43 chain 20968 chr5 181538259 + 24035971 24036273 L1PA7 6471 + 6167 6470 55175 130 34 33 77 0 1 43 0 1 18 chain 27991 chr5 181538259 + 24083119 24083601 MLT2A1 477 + 0 477 44884 66 0 2 74 0 1 26 1 5 86 17 12 52 1 0 33 87 81 39 chain 12929 chr5 181538259 + 24141052 24141370 MER61A 341 + 9 341 65204 47 14 29 36 75 76 30 1 0 49 29 28 37 chain 4598 chr5 181538259 + 24179842 24180025 MER74C 455 + 154 341 87803 24 28 29 41 75 78 15 chain 92643 chr5 181538259 + 24186392 24187407 L1PA4 6152 + 3690 4706 19249 248 0 1 767 chain 46672 chr5 181538259 + 24227394 24227926 L1PA3long 6157 + 5626 6155 30783 277 0 1 86 4 0 165 chain 31449 chr5 181538259 + 24227936 24228338 LTR3B 427 + 14 421 40773 163 6 0 123 0 3 25 1 7 34 1 0 4 0 2 23 0 1 22 chain 58651 chr5 181538259 + 24310318 24311092 LTR12D 1347 + 403 1347 26772 133 1 32 15 8 7 101 1 19 276 0 97 108 0 35 107 10 0 14 chain 7196 chr5 181538259 + 24314644 24314730 LTR12D 1347 + 587 673 76954 86 chain 3326 chr5 181538259 + 24314732 24314772 LTR12D 1347 + 484 524 96802 40 chain 3694 chr5 181538259 + 24314905 24314950 LTR12D 1347 + 706 752 93652 24 0 1 21 chain 2019 chr5 181538259 + 24315358 24315379 LTR12D 1347 + 1054 1075 106195 21 chain 49753 chr5 181538259 + 24360456 24361166 L1PA8 5853 + 5135 5842 29656 34 21 23 103 4 5 264 1 0 44 2 0 51 19 0 19 2 1 10 4 3 34 0 1 13 3 21 19 1 0 62 chain 174632 chr5 181538259 + 24371466 24373332 L1HS 6032 + 3365 5232 10862 1862 0 1 4 chain 99148 chr5 181538259 + 24374626 24375809 L1PA7 6471 + 5254 6441 18393 246 4 6 102 0 1 89 0 2 622 1 0 119 chain 42161 chr5 181538259 + 24387042 24387571 LTR12 884 + 0 634 33270 25 1 0 41 0 41 167 4 71 36 2 0 253 chain 316953 chr5 181538259 + 24387627 24391797 HERV9-int 5642 + 14 4061 6471 38 2 1 62 17 22 231 0 1 216 1 0 196 43 42 58 0 85 61 80 0 38 159 0 54 0 1 258 0 1 276 1 2 83 1 22 333 0 1 904 6 11 174 3 0 739 0 1 136 chain 17736 chr5 181538259 + 24400670 24400896 LTR12 884 + 356 604 58967 12 0 22 214 chain 14097 chr5 181538259 + 24400901 24401071 LTR12 884 + 712 882 63460 170 chain 86039 chr5 181538259 + 24465738 24466777 LTR5A 1029 + 0 1028 20428 149 1 0 46 11 12 648 1 0 75 10 0 98 chain 19730 chr5 181538259 + 24649663 24649941 LTR3A 482 + 0 293 56750 20 8 0 136 7 16 23 0 14 84 chain 7656 chr5 181538259 + 24649941 24650051 HERVK3-int 3053 + 328 430 75737 41 1 0 18 2 0 18 5 0 25 chain 16966 chr5 181538259 + 24660896 24661112 LTR3A 482 + 268 482 59838 139 2 0 75 chain 6331 chr5 181538259 + 24682594 24682683 THE1C-int 1605 + 126 269 79891 13 3 57 73 chain 16943 chr5 181538259 + 24722281 24722493 L1PA7 6471 + 6257 6469 59865 212 chain 32005 chr5 181538259 + 24735347 24735802 LTR3A 482 + 0 482 40340 161 4 13 19 0 14 50 3 0 8 2 0 71 0 1 6 0 1 45 0 1 17 1 0 13 13 20 42 chain 9823 chr5 181538259 + 24740356 24740478 MSTA 426 + 299 422 70778 112 0 1 10 chain 115503 chr5 181538259 + 24754617 24756123 L1PA7 6471 + 4942 6457 16308 42 0 1 123 5 1 54 0 1 361 0 1 91 1 4 76 13 14 59 7 11 357 1 8 9 1 0 41 11 8 93 28 27 133 chain 28176 chr5 181538259 + 24757763 24758143 MLT2A1 477 + 0 379 44599 167 15 13 24 0 1 174 chain 136591 chr5 181538259 + 24827929 24829606 L1PA7 6471 + 3710 5409 13378 50 6 16 751 0 4 132 0 8 738 chain 169213 chr5 181538259 + 24885671 24887800 L1PA7 6471 + 4329 6466 11145 112 0 3 299 0 4 39 10 9 28 0 1 131 3 0 128 9 11 529 0 2 509 7 8 154 3 4 86 11 12 49 10 7 12 chain 8870 chr5 181538259 + 24924933 24925068 L1PA8 5853 + 5715 5848 72832 23 7 6 16 2 1 87 chain 251125 chr5 181538259 + 24978290 24981190 L1PA5 6144 + 1622 4543 8195 223 1 0 318 0 7 399 0 1 126 5 6 462 1 0 125 1 0 219 0 1 164 1 0 5 1 0 604 0 1 210 0 15 35 chain 30394 chr5 181538259 + 25011890 25012295 L1PA7 6471 + 6047 6461 41681 83 0 1 86 1 0 41 0 9 31 18 0 7 4 22 134 chain 21206 chr5 181538259 + 25056854 25057145 MER57C2 434 + 71 425 54875 142 3 35 106 5 36 35 chain 4226 chr5 181538259 + 25145874 25145920 MSTD 398 + 352 398 89961 46 chain 56022 chr5 181538259 + 25162542 25163246 LTR30 714 + 0 714 27558 213 1 9 312 8 7 83 8 11 79 chain 33204 chr5 181538259 + 25251559 25252011 MLT2A2 560 + 0 560 39345 168 12 11 122 5 114 145 chain 66557 chr5 181538259 + 25289330 25290114 L1PA5 6144 + 5174 5969 24804 118 0 9 330 4 3 50 0 2 172 7 8 103 chain 41168 chr5 181538259 + 25334444 25334994 MLT2A2 560 + 0 560 33861 196 10 12 171 6 14 167 chain 27026 chr5 181538259 + 25353611 25353917 AluYk4 311 + 0 306 46232 306 chain 5461 chr5 181538259 + 25355019 25355096 MADE1 96 + 3 96 83397 26 2 18 49 chain 151488 chr5 181538259 + 25359853 25361566 L1PA5 6144 + 4430 6144 12254 1567 4 5 142 chain 28668 chr5 181538259 + 25368201 25368515 AluYb8 318 + 0 313 43847 123 1 0 190 chain 79800 chr5 181538259 + 25408965 25409999 L1PA7 6471 + 4680 5709 21662 144 2 1 47 0 29 45 4 3 291 0 2 203 0 1 47 1 0 6 37 0 122 0 3 85 chain 124762 chr5 181538259 + 25460935 25462511 THE1A-int 1579 + 0 1574 14739 403 27 26 747 3 0 101 4 5 266 0 1 25 chain 22774 chr5 181538259 + 25462516 25462830 THE1A 353 + 0 353 52714 110 1 0 83 3 0 5 2 44 41 0 1 69 chain 2647 chr5 181538259 + 25470224 25470252 MLT1C 463 + 372 400 102734 28 chain 307652 chr5 181538259 + 25473002 25476660 L1PA5 6144 + 2459 6129 6670 70 11 15 293 9 10 366 0 1 203 0 14 12 16 0 305 0 1 391 7 8 484 0 1 24 1 2 638 1 5 827 chain 58280 chr5 181538259 + 25507528 25508173 L1PA3long 6157 + 5507 6155 26875 251 0 3 394 chain 58965 chr5 181538259 + 25575355 25576098 MER4E 760 + 0 752 26675 379 0 4 150 3 1 66 0 7 145 chain 431181 chr5 181538259 + 25627271 25633607 L1PA8 5853 + 50 5853 4737 22 3 1 8 1 0 14 34 13 194 18 6 24 0 3 297 0 6 12 7 1 122 0 3 62 1 2 49 6 7 249 2 1 96 2 0 5 7 18 144 15 15 60 3 5 354 301 0 29 1 0 96 0 2 56 1 0 232 0 1 100 3 0 523 8 0 21 8 5 135 2 0 200 278 5 100 0 1 81 0 1 155 2 0 483 18 40 439 7 23 19 0 5 392 0 4 15 1 0 3 2 0 83 1 2 138 0 1 4 0 12 247 0 1 24 4 5 38 1 0 20 0 1 7 0 4 13 2 0 28 4 6 36 1 0 9 6 19 33 2 1 18 2 1 93 chain 6887 chr5 181538259 + 25713437 25713606 MER1B 344 + 95 266 78002 17 14 18 6 3 0 19 0 12 10 39 28 61 chain 8253 chr5 181538259 + 25730541 25730648 MER70B 575 + 3 112 74279 37 0 1 8 1 0 28 0 2 33 chain 87584 chr5 181538259 + 25831262 25832245 L1P1 4361 + 3347 4328 20124 804 1 0 154 1 0 23 chain 49736 chr5 181538259 + 25891788 25892455 PABL_A 660 + 0 660 29664 56 6 10 169 13 0 252 0 1 98 1 0 5 0 1 4 6 7 57 chain 10515 chr5 181538259 + 25917326 25917458 L1PA14 3548 + 347 480 69390 13 0 1 119 chain 75112 chr5 181538259 + 25938616 25939485 L1P1 4361 + 2952 3820 22813 448 8 6 377 0 1 36 chain 49272 chr5 181538259 + 25968616 25969635 MER11C 1089 + 0 1074 29842 225 0 5 34 0 3 94 0 5 60 32 15 19 8 11 6 4 0 22 3 4 10 305 374 156 0 1 21 11 0 9 chain 38829 chr5 181538259 + 25998996 25999440 L1PA5 6144 + 5683 6127 35483 444 chain 65192 chr5 181538259 + 26087702 26088576 L1PA8 5853 + 4926 5853 25135 78 0 2 6 0 3 78 0 1 133 4 0 7 7 11 275 0 1 41 0 35 11 2 0 73 1 0 7 1 0 13 5 6 16 3 1 12 0 17 7 1 0 93 chain 54348 chr5 181538259 + 26099930 26101236 L1PA2 6032 + 4756 6032 28105 443 30 0 833 chain 455027 chr5 181538259 + 26148393 26154600 L1PA8A 6298 + 59 6286 4258 5 3 0 7 2 0 7 6 1 12 0 1 5 3 0 22 24 15 14 2 1 8 4 3 11 1 0 6 1 0 10 2 0 17 39 33 6 1 0 9 9 5 8 1 0 43 6 1 9 6 0 10 0 4 3 10 0 73 2 0 23 8 4 14 0 1 420 5 6 30 0 6 181 0 4 22 0 3 5 15 0 14 1 0 89 2 0 20 18 69 468 3 0 27 1 5 166 0 2 390 1 0 4 1 2 126 16 0 16 7 21 305 0 1 550 0 4 12 8 12 16 0 3 12 0 1 113 0 2 301 0 1 359 1 0 162 0 1 287 0 4 668 1 2 127 1 4 50 0 1 2 4 0 402 8 0 15 0 1 219 6 7 24 7 25 47 chain 84086 chr5 181538259 + 26197417 26198424 LTR5A 1029 + 0 1029 20784 134 0 13 749 6 15 118 chain 33717 chr5 181538259 + 26214709 26215085 L1PA3long 6157 + 5780 6157 38908 43 0 1 333 chain 238200 chr5 181538259 + 26287355 26290072 L1PA4 6152 + 3422 6143 8517 94 1 0 65 0 1 350 0 3 486 0 1 213 1 0 126 1 0 1206 0 1 70 0 1 104 chain 66923 chr5 181538259 + 26307816 26308574 L1PA5 6144 + 5374 6135 24717 371 0 3 387 chain 110585 chr5 181538259 + 26324239 26325599 LTR12C 1709 + 0 1705 16998 273 39 0 229 5 3 5 0 2 138 0 278 184 1 0 5 3 1 106 0 4 18 0 3 152 0 102 202 chain 37134 chr5 181538259 + 26333421 26333842 L1PA2 6032 + 5613 6030 36659 255 5 1 161 chain 60002 chr5 181538259 + 26425950 26426627 L1PA3long 6157 + 5482 6157 26371 519 3 1 155 chain 11781 chr5 181538259 + 26436999 26437204 L1M1 2793 + 2468 2680 67248 101 30 48 7 9 0 4 1 0 45 1 0 7 chain 25260 chr5 181538259 + 26440640 26441252 L1MA3 4352 + 3764 4352 48852 45 23 27 23 114 115 54 0 1 65 64 43 5 0 1 37 1 0 80 2 0 22 1 0 6 1 0 29 1 0 7 11 7 21 chain 542984 chr5 181538259 + 26476049 26482061 L1PA3long 6157 + 0 6157 1138 153 0 1 43 1 12 142 3 0 4 1 0 421 0 128 1303 0 4 170 0 1 1978 0 4 982 0 1 661 1 0 149 chain 32644 chr5 181538259 + 26492761 26493320 LTR4 552 + 14 552 39812 21 0 1 20 36 21 4 1 0 33 4 0 62 16 14 37 0 5 162 30 24 57 20 21 56 chain 31306 chr5 181538259 + 26525768 26526110 L1PA3long 6157 + 5801 6143 40891 342 chain 30933 chr5 181538259 + 26535791 26536260 L1PA16 3655 + 2725 3200 41189 107 0 1 45 22 26 11 1 0 64 6 7 58 11 12 144 chain 33083 chr5 181538259 + 26560083 26560449 L1PA3long 6157 + 5791 6157 39452 366 chain 12622 chr5 181538259 + 26560811 26561004 MLT2A1 477 + 0 201 65771 40 8 10 69 0 1 19 1 2 21 7 11 28 chain 183589 chr5 181538259 + 26561121 26563646 HERVL-int 5654 + 1805 5654 10405 274 13 5 144 119 119 496 1 2 43 3 1333 536 6 0 500 1 0 4 0 1 60 7 10 5 0 2 91 0 1 108 13 14 101 chain 21143 chr5 181538259 + 26652598 26652928 THE1B 368 + 2 356 54957 42 5 20 104 5 4 26 35 45 113 chain 40621 chr5 181538259 + 26716363 26716802 L1PA2 6032 + 5582 6021 34205 439 chain 7016 chr5 181538259 + 26719259 26719343 MLT1A0 366 + 265 349 77548 84 chain 427079 chr5 181538259 + 26769217 26775132 HERVL-int 5654 + 0 5654 4787 61 0 1 4 1 0 354 6 5 15 1 2 337 0 6 108 79 48 138 0 4 41 2 0 519 11 10 167 1 2 443 12 0 89 3 0 187 1 2 4 1 0 85 1 0 220 1 0 1060 0 2 65 0 5 340 1 0 340 1 52 254 312 26 132 14 22 504 chain 25722 chr5 181538259 + 26774179 26774456 AluYa5 310 + 26 303 48141 277 chain 30255 chr5 181538259 + 26775133 26775626 MLT2A1 477 + 1 477 41801 149 0 5 6 17 9 32 4 5 178 69 54 38 chain 11996 chr5 181538259 + 26831373 26832057 MSTB 430 + 10 399 66842 40 515 221 23 1 0 105 chain 46471 chr5 181538259 + 26852496 26853058 LTR12_ 688 + 7 673 30858 380 0 104 182 chain 247374 chr5 181538259 + 26896579 26899851 L1PA8 5853 + 2602 5837 8296 57 5 6 205 2 1 54 1 2 294 1 0 104 0 1 210 0 2 6 2 0 11 0 1 257 4 0 709 12 15 468 26 25 123 6 7 276 0 1 30 1 19 34 1 2 42 2 1 45 2 0 49 68 0 20 1 0 14 1 0 6 1 0 37 0 17 10 1 0 74 chain 86540 chr5 181538259 + 26925841 26926849 L1PA6 6164 + 3901 4908 20317 53 0 1 411 0 1 282 3 0 58 0 1 4 1 0 196 chain 23103 chr5 181538259 + 26935521 26935867 L1PB2 3958 + 3474 3814 52206 61 6 5 77 2 1 64 1 0 71 2 0 17 6 5 39 chain 10182 chr5 181538259 + 26952665 26952834 MSTC 436 + 84 229 70047 25 28 4 116 chain 38727 chr5 181538259 + 26998281 26998741 L1PA4 6152 + 5693 6152 35545 98 0 1 106 3 1 253 chain 65870 chr5 181538259 + 27002181 27002925 L1PA5 6144 + 5394 6140 24985 76 1 2 524 0 1 143 chain 55051 chr5 181538259 + 27047098 27047690 L1PA2 6032 + 5437 6029 27852 592 chain 7367 chr5 181538259 + 27111585 27111672 U6 107 + 17 105 76486 7 0 1 80 chain 181446 chr5 181538259 + 27111674 27114082 L1PA8 5853 + 3345 5752 10527 49 7 6 234 0 1 152 11 12 192 0 2 510 0 1 187 0 1 42 1 0 274 0 7 69 0 1 159 1 0 4 0 1 315 1 0 45 2 0 69 24 15 50 1 0 9 chain 3004 chr5 181538259 + 27119550 27119711 LTR22 571 + 0 160 37331 78 1 0 82 chain 115714 chr5 181538259 + 27119715 27121105 LTR12C 1709 + 0 1709 16287 263 1 0 224 1 0 305 9 325 5 0 2 100 0 4 71 7 6 404 chain 7108 chr5 181538259 + 27121105 27121486 LTR22 571 + 160 535 37331 245 5 8 22 48 37 50 0 2 11 chain 7363 chr5 181538259 + 27166462 27166542 L1PA7 6471 + 5360 5440 76498 80 chain 26966 chr5 181538259 + 27192104 27192621 L1PA15 4387 + 3761 4265 46314 51 1 3 14 4 0 16 6 5 40 7 5 38 1 0 36 0 1 31 5 3 54 4 6 40 1 0 26 1 0 25 35 34 19 18 13 44 chain 217634 chr5 181538259 + 27201863 27204502 L1PA6 6164 + 3510 6161 9104 186 1 0 372 0 1 535 0 1 131 0 1 280 0 1 278 0 4 8 3 0 35 1 2 147 0 1 75 0 1 95 0 1 250 0 7 227 3 0 12 chain 108848 chr5 181538259 + 27210755 27211964 L1HS 6032 + 1445 2653 17205 746 1 0 462 chain 73966 chr5 181538259 + 27253897 27255404 L1PA4 6152 + 4635 6143 23103 433 1 0 175 0 1 614 0 1 284 chain 23121 chr5 181538259 + 27347310 27347652 THE1B 368 + 0 368 52180 68 14 36 64 3 0 26 2 0 48 0 1 55 13 21 49 chain 9574 chr5 181538259 + 27427264 27427406 L1PB1 5432 + 5159 5296 71322 9 2 0 52 2 1 16 1 0 44 1 0 15 chain 72774 chr5 181538259 + 27478578 27479376 L1PA3long 6157 + 5359 6157 23366 798 chain 28627 chr5 181538259 + 27522184 27522492 AluYa5 310 + 0 305 43906 97 3 0 208 chain 9948 chr5 181538259 + 27638853 27638977 MER4A1 472 + 0 124 70533 124 chain 155448 chr5 181538259 + 27641749 27643501 L1PA5 6144 + 4333 6087 12042 1497 0 1 59 0 1 196 chain 41163 chr5 181538259 + 27659790 27660311 L1PA7 6471 + 5933 6468 33867 156 5 1 68 1 0 217 0 19 74 chain 301097 chr5 181538259 + 27677875 27681548 L1PA6 6164 + 2504 6156 6799 250 2 1 429 5 6 242 4 0 270 8 0 90 0 1 805 10 11 487 0 2 116 5 0 100 0 1 511 1 0 99 8 0 231 chain 14465 chr5 181538259 + 27691347 27691547 L1PA16 3655 + 3356 3558 62946 55 1 2 72 1 2 71 chain 159226 chr5 181538259 + 27693723 27696568 L1PB1 5432 + 3054 5424 11796 187 6 7 221 9 8 86 0 23 142 0 8 84 0 4 141 12 0 26 7 0 220 2 3 101 0 1 301 39 18 24 15 0 27 0 2 20 1 0 97 2 5 5 3 0 199 4 6 56 455 31 7 5 0 24 1 0 7 32 25 47 6 5 15 1 0 43 1 0 16 3 0 7 13 5 11 0 3 5 25 17 26 1 0 21 1 0 10 1 0 19 1 0 4 chain 125515 chr5 181538259 + 27743279 27744764 LTR12C 1709 + 0 1709 14626 525 0 1 193 0 118 70 5 7 198 1 0 6 2 0 106 0 4 186 0 102 193 chain 173518 chr5 181538259 + 27752956 27754861 L1PA3long 6157 + 4248 6157 10927 1062 0 4 843 chain 43839 chr5 181538259 + 27817734 27818273 MER41A 554 + 15 554 32225 539 chain 9175 chr5 181538259 + 27870655 27870793 Tigger3b 1229 + 631 769 72182 12 0 1 47 4 5 68 2 0 5 chain 436698 chr5 181538259 + 27897990 27903597 HERVL-int 5654 + 0 5654 4633 152 0 1 161 0 17 226 0 1 139 1 0 4 11 15 294 13 10 374 0 3 314 4 0 266 1 2 8 0 25 258 2 1 417 7 0 6 0 7 663 0 1 91 26 27 176 13 6 190 0 1 511 0 4 66 1 0 155 0 3 835 0 1 101 1 2 120 chain 30299 chr5 181538259 + 27903597 27904021 MLT2A1 477 + 0 477 41762 10 0 2 157 4 1 9 0 1 108 1 20 77 4 0 7 10 48 37 chain 59113 chr5 181538259 + 27919268 27919907 L1PA2 6032 + 5392 6031 26633 639 chain 129194 chr5 181538259 + 27954974 27956420 L1PA3long 6157 + 4711 6157 14121 518 1 0 4 0 1 765 3 1 6 0 2 149 chain 49202 chr5 181538259 + 27964475 27965081 LTR14B 630 + 12 630 29866 7 0 2 243 0 7 7 7 0 276 0 10 66 chain 20100 chr5 181538259 + 28044432 28044663 L1PA5 6144 + 5912 6143 56255 231 chain 205298 chr5 181538259 + 28047130 28049893 HERVH-int 3825 + 1084 3825 9526 26 62 65 6 1 0 5 0 1 36 15 0 201 1 0 7 9 0 171 0 1 4 1 0 172 0 1 621 22 20 255 0 1 4 1 0 421 21 22 4 1 0 102 28 30 38 1 0 527 chain 27387 chr5 181538259 + 28051837 28052291 LTR7B 505 + 0 497 45724 108 0 10 57 0 38 12 4 28 27 29 0 42 15 16 27 1 0 29 6 7 40 14 13 43 chain 2888 chr5 181538259 + 28053149 28053190 MIR 256 + 84 125 100940 32 0 1 4 1 0 4 chain 56474 chr5 181538259 + 28064671 28065280 L1PA2 6032 + 5420 6029 27435 609 chain 107372 chr5 181538259 + 28200123 28201316 L1HS 6032 + 314 1512 17399 210 0 4 143 0 1 270 1 0 4 0 1 565 chain 27975 chr5 181538259 + 28227799 28228162 THE1B 368 + 0 368 44909 15 1 0 25 0 5 127 3 2 24 0 2 168 chain 3154 chr5 181538259 + 28275195 28275233 MLT1B 390 + 346 384 98331 38 chain 3298 chr5 181538259 + 28275444 28275480 MLT2C1 407 + 216 252 97034 36 chain 53146 chr5 181538259 + 28286793 28287490 LTR30 714 + 0 714 28515 202 1 0 5 5 6 30 6 11 280 13 12 19 0 13 136 chain 9858 chr5 181538259 + 28335212 28335355 L1PB4 2604 + 2432 2572 70703 68 3 2 53 3 1 16 chain 231644 chr5 181538259 + 28352509 28355208 L1PA5 6144 + 3457 6142 8704 247 0 1 742 0 3 34 0 4 140 1 0 150 21 0 169 1 2 337 15 15 339 5 7 126 0 1 361 4 0 7 chain 5462 chr5 181538259 + 28392890 28392956 MLT1A1 405 + 267 333 83395 66 chain 32818 chr5 181538259 + 28399249 28399682 MER57A1 433 + 0 433 39652 86 3 1 188 0 1 6 1 2 149 chain 3111 chr5 181538259 + 28438110 28438143 L1MA6 2487 + 2342 2375 98680 33 chain 50225 chr5 181538259 + 28449857 28450470 HERVL-int 5654 + 5032 5648 29474 193 3 2 202 0 4 215 chain 99049 chr5 181538259 + 28484407 28485615 L1PA7 6471 + 5250 6470 18410 69 1 2 218 0 1 80 1 0 5 0 1 255 4 5 45 0 9 530 chain 98852 chr5 181538259 + 28503876 28504954 L1PA2 6032 + 3125 4203 18430 1078 chain 39347 chr5 181538259 + 28547615 28548117 LTR14B 630 + 0 630 35117 18 0 1 4 1 0 94 0 129 304 1 0 80 chain 20559 chr5 181538259 + 28563484 28563807 L1PA8 5853 + 5530 5847 55697 34 1 0 44 3 1 7 0 1 59 26 24 40 2 1 19 1 0 87 chain 83475 chr5 181538259 + 28598954 28600015 MER11B 1079 + 0 1079 20917 149 0 1 385 12 12 33 14 15 175 15 28 81 0 1 150 0 1 32 0 1 15 chain 14954 chr5 181538259 + 28601408 28601625 Tigger2 2703 + 2318 2538 62319 26 1 2 9 0 2 6 1 6 6 5 0 163 chain 47172 chr5 181538259 + 28613125 28613649 L1PA3long 6157 + 5633 6157 30584 524 chain 36076 chr5 181538259 + 28669038 28669450 L1PA5 6144 + 5731 6143 37348 412 chain 31400 chr5 181538259 + 28730718 28731309 L1PB1 5432 + 4867 5423 40812 231 12 11 5 3 0 10 40 35 9 2 0 52 7 6 11 8 7 37 1 0 8 1 0 4 16 4 26 13 10 13 2 0 24 1 0 21 1 0 13 1 0 19 chain 165110 chr5 181538259 + 28759316 28761143 L1PA3long 6157 + 4328 6155 11403 1827 chain 4793 chr5 181538259 + 28798157 28798779 L1PA7 6471 + 5674 6210 28021 168 87 0 296 0 1 71 chain 554085 chr5 181538259 + 28798790 28804814 L1PA2 6032 + 0 6031 475 473 0 4 1410 0 1 3114 0 2 1027 chain 2027 chr5 181538259 + 28804974 28805237 L1PA7 6471 + 6210 6466 28021 248 7 0 8 chain 87073 chr5 181538259 + 28844382 28845347 L1PA2 6032 + 3736 4701 20132 965 chain 221086 chr5 181538259 + 28845347 28847809 L1HS 6032 + 1275 3738 9011 1773 0 1 689 chain 21422 chr5 181538259 + 28929712 28930033 LTR7B 505 + 81 441 54609 27 0 10 53 0 42 11 4 28 28 36 0 85 1 0 76 chain 56468 chr5 181538259 + 28936097 28936846 L1PA7 6471 + 5718 6469 27439 75 1 0 383 17 0 11 0 17 92 27 30 143 chain 3728 chr5 181538259 + 28947757 28947801 L1ME1 1623 + 260 304 93420 44 chain 86350 chr5 181538259 + 28984447 28985591 L1PA8A 6298 + 3811 4979 20355 18 5 26 4 1 0 14 1 2 476 3 7 78 1 0 121 5 6 255 2 1 160 chain 453579 chr5 181538259 + 28991081 28996395 L1PA5 6144 + 3 5379 4296 152 22 38 72 0 5 258 0 15 156 17 16 1252 0 5 341 1 0 863 1 0 243 1 11 654 0 2 148 0 3 37 0 1 69 0 4 928 0 4 99 chain 14977 chr5 181538259 + 29046837 29047063 L1PA8 5853 + 5632 5853 62291 33 5 3 11 1 0 13 3 1 6 0 1 40 2 1 112 chain 91060 chr5 181538259 + 29057587 29058604 L1PA4 6152 + 3637 4655 19491 51 0 1 966 chain 17140 chr5 181538259 + 29069233 29069478 THE1D-int 1627 + 704 950 59654 17 2 0 6 20 23 200 chain 34504 chr5 181538259 + 29092034 29092493 LTR2 463 + 2 463 38349 174 12 14 132 0 1 58 0 1 29 1 0 28 1 0 24 chain 492829 chr5 181538259 + 29270049 29276411 L1PA7 6471 + 7 6450 3348 45 2 1 126 16 9 5 1 0 8 5 4 20 27 38 39 0 5 103 1 4 223 4 0 362 3 4 483 0 4 16 0 1 153 5 4 34 1 11 557 0 1 420 0 9 370 0 2 28 0 4 136 0 28 74 4 5 176 0 1 3 2 0 21 0 4 74 8 0 98 0 11 105 17 16 27 7 8 117 8 6 169 1 0 388 3 4 7 0 1 41 0 1 279 6 7 111 5 6 171 0 4 415 0 3 17 0 1 24 10 3 41 1 0 399 2 0 300 0 10 38 chain 2850 chr5 181538259 + 29394154 29394447 HERVFH21-int 991 + 725 927 101242 22 224 136 26 10 7 11 chain 6793 chr5 181538259 + 29468099 29468180 MLT1D 503 + 418 499 78341 81 chain 119869 chr5 181538259 + 29489012 29490321 L1PA2 6032 + 4727 6031 15558 680 5 0 624 chain 125643 chr5 181538259 + 29526830 29528243 L1PA4 6152 + 3773 5187 14605 387 0 1 1026 chain 10456 chr5 181538259 + 29574880 29575132 L1PB1 5432 + 5173 5404 69506 47 2 1 27 73 60 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 chain 29109 chr5 181538259 + 29575658 29575998 L1PA5 6144 + 5806 6141 43172 6 5 0 184 1 0 53 0 1 91 chain 41946 chr5 181538259 + 29593751 29594315 PABL_A 660 + 92 648 33392 35 1 0 92 19 11 48 8 9 361 chain 51497 chr5 181538259 + 29600857 29601601 MER4E 760 + 0 742 29045 23 0 1 105 81 69 34 2 3 36 0 10 43 0 1 36 2 0 368 1 0 13 chain 118589 chr5 181538259 + 29603043 29604647 L1PA5 6144 + 0 6143 15794 120 1 15 24 23 35 325 4 0 8 0 28 271 15 2890 40 0 1603 25 0 6 16 7 13 386 0 1 231 10 8 98 chain 3681 chr5 181538259 + 29609613 29609652 L1PA2 6032 - 435 474 93023 39 chain 40916 chr5 181538259 + 29609652 29610095 L1PA2 6032 + 5589 6032 34020 443 chain 17535 chr5 181538259 + 29647852 29648072 L1PB 1623 + 873 1089 59198 189 5 1 26 chain 59166 chr5 181538259 + 29704189 29704865 L1PA4 6152 + 4679 5355 26616 676 chain 87007 chr5 181538259 + 29754924 29756034 L1PA7 6471 + 4546 5657 20231 122 0 4 115 5 11 10 6 0 177 9 8 355 3 0 6 8 4 262 0 5 32 chain 22332 chr5 181538259 + 29788040 29788358 THE1B 368 + 13 322 53364 27 0 5 127 2 1 27 6 0 47 11 4 71 chain 79800 chr5 181538259 + 29858081 29859067 L1PA7 6471 + 3355 4343 21661 95 0 2 891 chain 7343 chr5 181538259 + 29923485 29923575 HUERS-P3-int 2218 + 1146 1237 76540 22 0 1 68 chain 5859 chr5 181538259 + 29937720 29937786 MSTA 426 + 360 426 81657 66 chain 3761 chr5 181538259 + 29972063 29972105 MER3 215 + 165 207 93132 42 chain 78805 chr5 181538259 + 30005199 30006247 MER11C 1089 + 0 1064 21917 246 0 9 62 0 4 41 0 1 23 1 0 146 52 51 107 1 5 4 1 0 38 0 1 127 0 1 54 1 0 144 chain 100349 chr5 181538259 + 30013248 30014348 L1PA2 6032 + 4930 6032 18255 671 0 2 429 chain 11964 chr5 181538259 + 30026442 30026691 L1PB1 5432 + 5159 5409 66892 10 4 0 50 1 0 18 1 0 21 38 53 16 9 6 13 2 0 24 1 0 21 1 0 13 1 0 5 chain 56385 chr5 181538259 + 30056735 30057460 L1PA8A 6298 + 5562 6291 27457 6 0 2 165 0 1 287 1 0 190 4 6 72 chain 4252 chr5 181538259 + 30060588 30060647 L1PREC2 3366 + 2718 2775 89812 32 2 0 25 chain 23514 chr5 181538259 + 30072215 30072488 L1P1 4361 + 2585 2858 51562 273 chain 102035 chr5 181538259 + 30167727 30169083 L1PB1 5432 + 2663 4029 18058 167 3 0 10 1 2 423 0 1 205 12 15 23 0 3 128 2 3 166 3 7 213 chain 53064 chr5 181538259 + 30171327 30171945 L1PA7 6471 + 5841 6459 28548 618 chain 3407 chr5 181538259 + 30205033 30205070 LTR12_ 688 + 454 491 96012 37 chain 19659 chr5 181538259 + 30278010 30278281 L1PA7 6471 + 6202 6470 56845 87 13 9 12 1 0 4 1 0 6 0 2 91 0 1 56 chain 57698 chr5 181538259 + 30294070 30294844 MER4E 760 + 0 760 27052 24 10 9 16 11 0 106 13 11 284 14 15 68 1 0 100 1 0 4 0 1 122 chain 100108 chr5 181538259 + 30345546 30346790 LTR12C 1709 + 0 1709 18285 300 6 7 154 31 5 4 0 1 54 0 1 124 0 485 89 0 4 399 1 0 82 chain 23535 chr5 181538259 + 30441332 30441714 L1MA3 4352 + 152 532 51530 18 20 15 11 7 8 91 16 17 170 12 13 37 chain 30202 chr5 181538259 + 30515492 30515841 L1PA2 6032 + 5688 6032 41847 199 1 2 132 6 0 11 chain 85051 chr5 181538259 + 30622602 30623642 L1PA7 6471 + 5407 6469 20611 215 0 6 320 5 26 487 5 0 8 chain 34358 chr5 181538259 + 30660367 30660740 L1PA4 6152 + 5779 6152 38453 373 chain 16275 chr5 181538259 + 30673746 30673956 L1PA6 6164 + 5943 6162 60648 13 0 8 38 1 2 158 chain 61367 chr5 181538259 + 30679761 30680522 THE1B-int 1605 + 825 1592 26018 530 0 1 163 0 5 68 chain 28565 chr5 181538259 + 30696749 30697063 L1PA4 6152 + 5827 6141 44009 314 chain 33374 chr5 181538259 + 30702209 30702588 L1PA4 6152 + 5772 6152 39196 231 1 2 147 chain 180121 chr5 181538259 + 30709028 30711067 L1PA4 6152 + 4112 6152 10583 517 1 0 671 0 1 721 0 1 129 chain 18186 chr5 181538259 + 30711132 30711369 MSTB-int 1649 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0 1 316 chain 11065 chr5 181538259 + 30910107 30910233 L1PA7 6471 + 6340 6466 68458 126 chain 169226 chr5 181538259 + 30947758 30949766 L1P1 4361 + 4 2013 11144 261 0 1 146 0 3 6 4 1 11 1 0 137 1 0 1317 0 1 80 0 1 44 chain 359877 chr5 181538259 + 30950002 30954126 L1PA5 6144 + 2022 6144 5804 172 0 2 109 15 1 858 2 0 1182 1 5 306 0 1 639 0 4 314 0 1 514 1 3 11 chain 48000 chr5 181538259 + 30991667 30992369 LTR8 732 + 31 732 30298 9 6 0 111 3 7 47 12 13 225 0 1 4 1 0 43 0 2 5 1 0 6 0 5 6 38 32 38 1 0 4 0 1 142 chain 10731 chr5 181538259 + 31020174 31020333 L1PB4 2604 + 2408 2570 68984 14 4 0 22 0 4 103 2 5 14 chain 173810 chr5 181538259 + 31038440 31040503 L1PA7 6471 + 4395 6470 10906 92 0 1 1135 0 6 147 7 11 633 4 5 45 chain 160602 chr5 181538259 + 31040508 31042793 L1PB1 5432 + 2824 5115 11712 18 10 7 37 0 3 20 20 24 74 0 4 7 13 9 120 1 2 61 14 15 44 2 1 85 15 14 4 0 1 108 0 1 244 7 6 260 1 0 475 17 22 109 4 5 22 4 0 123 0 1 4 1 0 43 2 1 305 1 2 10 chain 88706 chr5 181538259 + 31109919 31111056 L1PA8 5853 + 4718 5853 19904 291 2 0 78 1 0 6 4 2 8 0 10 451 1 0 46 2 0 68 2 1 8 2 1 16 12 11 25 2 1 19 1 0 8 5 6 79 chain 13482 chr5 181538259 + 31178099 31178262 MSTA 426 + 239 402 64333 163 chain 51661 chr5 181538259 + 31258038 31258648 L1PA7 6471 + 5861 6469 28976 598 2 0 10 chain 5540 chr5 181538259 + 31271746 31271838 MER5A1 166 + 44 134 83081 42 11 10 8 1 0 30 chain 6573 chr5 181538259 + 31317083 31317195 MER20 218 + 64 174 79061 13 6 12 69 8 0 16 chain 7697 chr5 181538259 + 31350986 31351088 MLT1B 390 + 23 124 75633 64 1 0 37 chain 9582 chr5 181538259 + 31371972 31372116 L1PA8 5853 + 5709 5853 71296 33 1 0 18 2 1 57 2 4 31 chain 39588 chr5 181538259 + 31449860 31450533 L1PB3 3668 + 2898 3527 34964 86 0 1 2 3 0 17 10 0 78 5 7 59 0 1 5 14 6 42 9 10 20 3 0 5 18 12 48 1 0 94 1 0 83 24 8 21 1 0 24 chain 5943 chr5 181538259 + 31474688 31474927 MLT1A0 366 + 62 299 81310 25 11 12 44 133 130 26 chain 27687 chr5 181538259 + 31484090 31484408 AluYb8 318 + 1 316 45336 125 3 0 190 chain 7560 chr5 181538259 + 31505683 31505786 HY3 101 + 0 100 75959 86 3 0 14 chain 32383 chr5 181538259 + 31703215 31703630 L1PA8 5853 + 5433 5844 40051 131 1 0 45 2 0 73 1 0 11 1 0 47 2 1 9 0 1 9 1 0 21 0 2 61 chain 21651 chr5 181538259 + 31707061 31707297 L1PA5 6144 + 5892 6128 54288 236 chain 22120 chr5 181538259 + 31736708 31737100 MSTB 430 + 4 428 53669 20 6 23 75 0 1 43 7 0 35 69 85 15 0 5 122 chain 3671 chr5 181538259 + 31778140 31778180 LTR12C 1709 + 688 728 93812 40 chain 6273 chr5 181538259 + 31824577 31824654 U13 108 + 0 77 80084 77 chain 25845 chr5 181538259 + 31985796 31986098 AluSp 311 + 0 304 47946 91 0 3 182 2 1 27 chain 155550 chr5 181538259 + 32039122 32041847 SVA_A 1864 + 19 1853 12037 130 1 0 280 1 0 54 111 0 176 3 0 24 571 0 78 0 2 78 80 0 46 4 0 3 40 0 74 77 0 89 4 1 90 1 0 101 2 0 179 0 4 196 3 0 229 chain 4171 chr5 181538259 + 32039588 32039646 SVA_A 1864 + 599 654 35828 53 3 0 2 chain 3487 chr5 181538259 + 32039646 32039699 SVA_A 1864 + 541 599 34290 14 1 6 38 chain 11435 chr5 181538259 + 32039918 32040261 SVA_A 1864 + 696 998 32640 25 9 49 75 4 1 41 78 0 111 chain 5132 chr5 181538259 + 32040072 32040150 SVA_A 1864 + 1034 1072 34290 34 40 0 4 chain 1475 chr5 181538259 + 32040287 32040337 SVA_A 1864 + 800 850 38302 50 chain 7334 chr5 181538259 + 32040337 32040473 SVA_A 1864 + 473 609 28434 136 chain 3884 chr5 181538259 + 32040637 32040699 SVA_A 1864 + 506 568 72106 62 chain 1995 chr5 181538259 + 32040876 32040913 SVA_A 1864 + 854 890 28434 32 1 0 4 chain 157739 chr5 181538259 + 32141606 32143453 SVA_D 2077 + 25 2065 11896 7 0 14 293 2 0 385 0 3 34 3 0 147 2 0 10 2 0 25 47 7 84 2 4 15 2 1 160 0 224 627 chain 4057 chr5 181538259 + 32142516 32142563 SVA_D 2077 + 1257 1304 41519 47 chain 6200 chr5 181538259 + 32187627 32188110 L1M3 994 + 298 740 80354 58 385 344 40 chain 136138 chr5 181538259 + 32207602 32209655 SVA_F 1814 + 335 1814 13423 545 1 0 68 0 15 128 50 0 90 538 0 633 chain 2303 chr5 181538259 + 32208344 32208369 SVA_F 1814 + 1267 1291 57894 7 1 0 17 chain 879 chr5 181538259 + 32208484 32208510 SVA_F 1814 + 1005 1031 72130 26 chain 4268 chr5 181538259 + 32208525 32208666 SVA_F 1814 + 1046 1187 63024 141 chain 1690 chr5 181538259 + 32208667 32208717 SVA_F 1814 + 1090 1138 72130 33 2 0 15 chain 12123 chr5 181538259 + 32208718 32208847 SVA_F 1814 + 1011 1140 66622 129 chain 3042 chr5 181538259 + 32208859 32208896 SVA_F 1814 + 863 898 83983 25 2 0 10 chain 2903 chr5 181538259 + 32208897 32209021 SVA_F 1814 + 1011 1132 62678 112 3 0 9 chain 17174 chr5 181538259 + 32216221 32216455 MER1B 344 + 39 264 59601 179 14 5 41 chain 458354 chr5 181538259 + 32287595 32293169 HERVL-int 5654 + 0 5654 4168 117 21 20 231 11 0 375 0 3 139 4 9 1043 0 3 38 0 1 4 1 0 121 1 4 242 0 3 38 0 4 345 1 19 286 5 15 295 0 3 50 0 1 93 0 4 113 0 2 59 1 2 300 2 1 384 0 4 447 6 0 6 0 6 72 0 3 136 0 1 176 2 0 179 2 23 14 0 1 10 0 5 204 chain 31156 chr5 181538259 + 32293169 32293595 MLT2A1 477 + 0 459 41014 142 0 1 25 1 5 22 2 1 129 1 0 59 2 1 9 4 35 30 chain 23244 chr5 181538259 + 32309322 32309661 L1MA3 4352 + 3183 3526 52009 155 0 4 54 6 7 22 0 1 35 0 10 5 12 0 50 chain 9224 chr5 181538259 + 32309661 32309768 U6 107 + 0 107 72072 107 chain 4865 chr5 181538259 + 32345627 32345683 MER41-int 2638 + 363 419 86346 56 chain 46412 chr5 181538259 + 32347240 32347908 MER41-int 2638 + 1975 2634 30877 58 6 4 48 1 2 5 1 0 9 5 0 14 3 5 58 4 0 13 3 0 103 0 1 159 0 1 75 8 7 62 7 9 26 chain 13441 chr5 181538259 + 32359245 32359423 MER30 238 + 50 238 64398 57 4 0 17 0 14 100 chain 4580 chr5 181538259 + 32394471 32394526 L1MB8 1703 + 1524 1579 87907 55 chain 5607 chr5 181538259 + 32457792 32457858 MSTB 430 + 0 66 82776 66 chain 11724 chr5 181538259 + 32462098 32462404 MSTD 398 + 29 398 67358 35 125 191 82 9 6 55 chain 13821 chr5 181538259 + 32465973 32466143 AluSp 311 + 135 305 63842 34 0 1 27 1 0 108 chain 13598 chr5 181538259 + 32477574 32478550 L1MB3 1562 + 1238 1555 64166 113 1 0 54 758 101 18 8 7 24 chain 3461 chr5 181538259 + 32481480 32481519 Ricksha_c 1012 + 93 132 95543 39 chain 32651 chr5 181538259 + 32500122 32500701 LTR9B 643 + 41 628 39805 26 4 6 10 20 28 90 3 0 5 14 20 185 42 40 55 1 0 69 30 28 25 chain 29325 chr5 181538259 + 32536423 32536887 MER1A 529 + 43 529 42839 37 23 63 300 8 9 9 10 0 4 7 0 20 16 14 30 chain 10285 chr5 181538259 + 32587094 32587221 MER85 139 + 2 139 69840 85 0 10 42 chain 15184 chr5 181538259 + 32594609 32594875 MER1B 344 + 69 333 62058 129 12 5 26 51 56 48 chain 29401 chr5 181538259 + 32623424 32623828 MER51B 395 + 0 395 42734 24 27 15 92 0 1 113 1 0 8 5 0 7 0 6 17 0 2 110 chain 518506 chr5 181538259 + 32794710 32801237 L1PA7 6471 + 0 6466 2340 412 2 1 231 0 2 243 5 6 315 0 4 158 21 21 387 1 0 255 3 0 94 1 0 118 1 7 95 0 1 286 23 6 325 2 1 442 25 0 482 32 2 219 0 1 55 1 2 39 4 0 461 0 4 123 64 0 40 19 2 115 1 0 581 5 6 68 4 7 153 0 71 12 0 2 592 0 7 12 chain 26344 chr5 181538259 + 32814938 32815283 THE1A 353 + 2 350 47210 6 0 1 103 6 8 230 chain 90250 chr5 181538259 + 32815286 32816453 THE1A-int 1579 + 0 1175 19640 361 7 6 122 1 0 129 4 5 168 0 1 69 0 1 126 17 20 85 22 26 56 chain 317533 chr5 181538259 + 32824620 32827992 L1HS 6032 + 579 3951 6457 3372 chain 18163 chr5 181538259 + 32872738 32873069 THE1C 375 + 0 335 58497 27 1 0 12 69 75 72 12 11 138 chain 20392 chr5 181538259 + 32876461 32876831 MER1B 344 + 50 344 55896 106 82 11 98 17 12 67 chain 124265 chr5 181538259 + 32878382 32879831 L1PA6 6164 + 4697 6149 14802 192 4 8 270 1 0 982 chain 82775 chr5 181538259 + 32911292 32912611 L1PA2 6032 + 4734 6032 21068 267 21 0 1031 chain 32560 chr5 181538259 + 32922313 32922676 L1P1 4361 + 3539 3902 39903 363 chain 39008 chr5 181538259 + 32926785 32927209 L1PA2 6032 + 5608 6032 35350 424 chain 58578 chr5 181538259 + 32951662 32953000 MER4E1 777 + 0 769 26797 146 578 0 8 0 5 262 0 1 13 0 4 60 0 4 40 16 8 165 0 3 50 chain 3288 chr5 181538259 + 32968186 32968238 MADE1 96 + 45 96 97124 25 3 2 24 chain 54992 chr5 181538259 + 32985486 32986266 L1PB1 5432 + 4441 5220 27876 32 2 0 49 1 3 101 4 0 270 0 12 15 1 0 16 0 1 97 1 2 61 16 14 24 10 8 10 7 3 10 2 0 51 chain 115492 chr5 181538259 + 33019298 33020570 L1PA3long 6157 + 4872 6149 16311 577 0 5 695 chain 152262 chr5 181538259 + 33027676 33029836 L1PB1 5432 + 3305 5392 12211 424 0 7 15 4 0 231 0 1 186 1 0 339 0 4 115 3 0 60 1 0 107 0 8 15 7 1 264 80 32 24 9 6 14 16 10 52 3 2 14 1 0 45 1 0 15 31 19 12 2 0 5 1 0 14 2 0 27 1 0 19 chain 58129 chr5 181538259 + 33057416 33058048 L1PA3long 6157 + 5417 6049 26928 632 chain 32896 chr5 181538259 + 33059380 33059811 L1PA8 5853 + 5428 5853 39594 129 8 7 46 2 0 68 2 1 61 2 1 19 1 0 93 chain 167852 chr5 181538259 + 33083344 33085291 L1PA6 6164 + 4214 6162 11223 347 1 0 1188 0 1 82 1 0 160 1 2 9 2 9 14 6 0 136 chain 555914 chr5 181538259 + 33122370 33128395 L1PA2 6032 + 0 6031 364 918 1 0 2290 0 7 2816 chain 19240 chr5 181538259 + 33130687 33131016 THE1B 368 + 0 368 57308 44 11 42 86 2 1 28 32 42 34 12 11 80 chain 5317 chr5 181538259 + 33155955 33156017 L1PA16 3655 + 2019 2081 84108 62 chain 85320 chr5 181538259 + 33171906 33172864 L1PA4 6152 + 5195 6152 20565 623 2 1 333 chain 16352 chr5 181538259 + 33209742 33209955 Tigger1 2417 + 2103 2317 60572 146 0 2 61 1 0 5 chain 98563 chr5 181538259 + 33262277 33263429 L1PA4 6152 + 5029 6151 18471 411 4 0 346 34 7 104 0 1 253 chain 173020 chr5 181538259 + 33278655 33280564 L1PA3long 6157 + 4237 6147 10951 977 1 0 679 5 6 229 0 1 18 chain 7274 chr5 181538259 + 33298209 33298297 LTR39 781 + 643 731 76752 88 chain 53269 chr5 181538259 + 33342286 33342943 L1P3 4156 + 3488 4139 28475 6 1 0 32 2 1 401 2 1 178 2 0 6 1 0 26 chain 510746 chr5 181538259 + 33388690 33394866 L1PA6 6164 + 0 6161 2731 237 0 2 5 1 2 272 0 2 43 11 10 310 0 1 315 0 1 246 0 1 507 1 0 87 0 1 289 2 3 1355 31 9 553 7 8 176 6 9 867 0 4 205 11 0 34 0 1 447 10 11 148 chain 87611 chr5 181538259 + 33404169 33405240 L1PA8A 6298 + 5214 6291 20119 275 9 10 131 9 12 39 0 2 493 0 7 7 7 0 101 chain 2893 chr5 181538259 + 33431179 33431210 MER58A 224 + 50 81 100908 31 chain 58895 chr5 181538259 + 33436814 33437468 L1PA5 6144 + 5484 6138 26699 654 chain 4099 chr5 181538259 + 33489901 33490034 MER92B 628 + 0 132 90791 42 72 71 19 chain 7371 chr5 181538259 + 33527936 33528051 L1PB2 3958 + 3727 3838 76472 19 9 7 22 1 0 53 1 0 10 chain 515373 chr5 181538259 + 33539829 33546016 L1PA6 6164 + 0 6162 2498 55 12 14 66 10 0 432 1 0 407 1 0 38 5 6 173 1 2 17 1 2 36 1 0 199 1 2 342 13 11 180 2 0 247 9 10 43 1 0 155 0 3 74 26 0 666 1 2 137 14 15 371 0 2 665 0 1 638 0 2 183 0 1 115 1 0 839 0 2 9 chain 33862 chr5 181538259 + 33557744 33558172 MER1A 529 + 44 479 38807 414 1 8 13 chain 53252 chr5 181538259 + 33560311 33560909 L1PA4 6152 + 5530 6131 28484 188 0 1 172 0 1 146 0 1 92 chain 549661 chr5 181538259 + 33568655 33574758 L1PA3long 6157 + 50 6157 774 829 0 1 1445 0 1 660 1 0 1902 0 4 1248 1 0 17 chain 25167 chr5 181538259 + 33591939 33592257 AluSp 311 + 1 301 49010 122 8 0 9 1 0 154 9 0 15 chain 18933 chr5 181538259 + 33593566 33593845 L1PA8 5853 + 5582 5853 57614 29 5 0 67 17 15 47 2 1 19 1 0 50 1 2 41 chain 3361 chr5 181538259 + 33692155 33692379 MLT1J 494 + 96 353 96477 31 169 202 24 chain 37565 chr5 181538259 + 33697486 33697992 LTR10D 510 + 0 510 36356 69 3 7 23 1 0 28 8 5 58 0 4 37 6 5 30 1 2 242 chain 189914 chr5 181538259 + 33706709 33708956 L1PA7 6471 + 4214 6470 10126 426 0 2 182 0 1 4 1 0 534 0 1 108 0 6 143 1 0 212 0 1 636 chain 6098 chr5 181538259 + 33801288 33801361 MER63A 208 + 88 161 80740 73 chain 9627 chr5 181538259 + 33841551 33841673 MER85 139 + 7 139 71203 92 0 10 30 chain 86626 chr5 181538259 + 33843895 33844927 MER11C 1089 + 0 1059 20291 58 4 13 149 0 5 24 0 1 66 1 5 369 0 4 43 0 1 148 0 1 99 0 2 71 chain 513927 chr5 181538259 + 33858719 33865000 L1PA7 6471 + 6 6469 2575 38 0 1 358 0 3 1322 0 1 24 1 0 11 1 0 4 0 1 259 28 8 94 0 2 329 0 1 58 0 2 102 1 0 5 1 5 970 15 0 80 5 6 471 0 1 643 1 2 5 12 0 575 0 214 19 1 4 513 1 0 319 2 0 13 chain 73297 chr5 181538259 + 33905894 33906936 MER11A 1151 + 0 1151 23263 60 7 106 122 9 6 34 35 0 60 0 1 54 0 1 116 1 0 50 10 16 213 13 20 8 0 35 183 7 6 60 chain 43516 chr5 181538259 + 33916155 33916719 THE1B-int 1605 + 0 1605 32442 13 4 3 256 12 1054 279 chain 21973 chr5 181538259 + 33916721 33917020 THE1B 368 + 2 306 53876 167 1 0 19 5 7 4 0 1 9 0 4 17 1 0 76 chain 31351 chr5 181538259 + 33931164 33931628 MER4A1 472 + 0 472 40848 14 0 2 18 7 14 93 2 1 38 24 25 12 6 5 250 chain 58687 chr5 181538259 + 33953512 33954136 L1HS 6032 + 1817 2441 26762 624 chain 15998 chr5 181538259 + 33960400 33960747 L1PB1 5432 + 5105 5420 61025 9 1 0 33 1 0 9 27 21 43 18 16 41 48 33 4 0 1 12 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 23805 chr5 181538259 + 34021573 34021930 L1PA8 5853 + 5507 5853 51097 54 5 4 20 4 0 24 2 0 70 13 11 44 15 14 14 1 0 91 chain 71690 chr5 181538259 + 34085604 34086445 L1PA7 6471 + 5625 6466 23614 841 chain 27142 chr5 181538259 + 34102673 34102991 L1PA5 6144 + 5812 6144 46062 134 0 12 36 2 3 103 0 1 43 chain 22604 chr5 181538259 + 34120498 34120860 THE1B 368 + 0 368 52983 169 1 0 4 60 70 107 3 0 18 chain 30665 chr5 181538259 + 34127190 34127569 THE1D-int 1627 + 23 402 41410 379 chain 6105 chr5 181538259 + 34129302 34129375 L1MA7 2200 + 1871 1944 80709 73 chain 9728 chr5 181538259 + 34131492 34131710 L1MA5A 2387 + 2107 2295 70984 48 2 0 26 2 0 16 63 34 36 4 7 21 chain 127933 chr5 181538259 + 34135577 34137154 L1PA6 6164 + 4616 6162 14290 97 23 1 223 9 9 161 15 3 469 0 1 350 0 2 230 chain 565995 chr5 181538259 + 34147845 34153869 L1HS 6032 + 2 6032 66 72 0 1 2497 0 5 3455 chain 26806 chr5 181538259 + 34176112 34176416 L1PA2 6032 + 5729 6032 46528 35 1 0 268 chain 8040 chr5 181538259 + 34188860 34189019 THE1B 368 + 2 169 74780 47 0 6 13 26 27 10 11 12 52 chain 106452 chr5 181538259 + 34211825 34212984 L1PA3long 6157 + 4567 5726 17498 1159 chain 117651 chr5 181538259 + 34223753 34225064 L1PA3long 6157 + 4097 5408 15949 1311 chain 29983 chr5 181538259 + 34251588 34251907 AluYb8 318 + 0 318 42074 132 1 0 186 chain 5854 chr5 181538259 + 34275479 34275553 L1MA5 2750 + 2180 2255 81675 38 0 1 36 chain 19796 chr5 181538259 + 34279804 34280165 THE1D 372 + 8 360 56683 10 0 10 26 35 0 15 1 11 85 28 29 44 2 8 88 1 0 26 chain 7178 chr5 181538259 + 34286364 34286454 MLT1A0 366 + 252 342 77020 90 chain 25260 chr5 181538259 + 34317116 34317508 MSTA 426 + 0 405 48851 97 4 5 27 3 1 76 38 45 88 0 7 59 chain 23197 chr5 181538259 + 34370999 34371253 L1PA2 6032 + 5778 6032 52084 254 chain 3030 chr5 181538259 + 34378979 34379017 MLT2A1 477 + 440 477 99496 18 1 0 19 chain 314973 chr5 181538259 + 34379029 34383052 HERVL-int 5654 + 1 4044 6507 250 1 0 157 1 0 255 6 1 60 6 5 27 4 5 197 15 20 183 0 6 231 0 1 81 4 2 598 6 15 174 0 1 41 4 9 184 0 3 166 9 8 408 6 7 506 11 10 432 chain 158361 chr5 181538259 + 34418352 34422413 MER4-int 2692 + 73 2689 11851 26 2 0 3 1 0 16 11 9 22 1 0 25 0 1 11 1 7 228 1 0 247 0 1 36 5 6 12 5 3 207 16 14 116 0 2 128 0 5 114 3 0 17 2 0 22 0 6 62 0 1 29 18 20 131 0 1 15 0 1 23 910 314 148 22 14 25 14 19 22 0 13 21 1 2 54 14 15 177 1 0 42 880 0 60 0 10 8 1 0 105 chain 13606 chr5 181538259 + 34434933 34435265 MER4D1 891 + 548 877 64158 17 3 2 30 0 7 40 11 8 13 2 0 22 88 91 28 1 0 54 6 0 17 chain 290478 chr5 181538259 + 34468810 34472780 L1P3 4156 + 5 4139 7115 188 29 28 21 5 19 60 1 0 25 0 1 62 9 2 253 22 41 131 2 0 86 27 16 290 1 8 196 0 1 322 0 1 62 0 4 6 16 12 30 0 1 757 1 2 35 0 1 295 15 17 115 1 0 5 1 5 34 3 158 118 0 1 67 1 2 197 48 9 93 4 12 174 0 11 58 0 1 69 2 0 9 1 0 23 chain 6749 chr5 181538259 + 34479178 34479266 MLT1B 390 + 287 375 78480 88 chain 11594 chr5 181538259 + 34614324 34614526 Tigger3b 1229 + 759 946 67582 10 2 0 12 1 0 72 39 27 66 chain 39866 chr5 181538259 + 34626167 34626903 Tigger3b 1229 + 26 705 34764 42 0 1 23 43 44 92 8 0 16 0 1 50 5 4 29 2 0 8 6 0 135 0 1 80 29 34 11 1 0 29 75 23 45 0 4 7 chain 21846 chr5 181538259 + 34660178 34660439 AluSp 311 + 28 285 54044 210 4 0 47 chain 3595 chr5 181538259 + 34677864 34677905 MADE1 96 + 55 96 94469 41 chain 51851 chr5 181538259 + 34701080 34701811 MER4E1 777 + 0 766 28923 24 0 1 208 4 3 11 1 0 65 6 5 8 0 23 88 0 1 100 35 47 113 7 8 61 chain 106503 chr5 181538259 + 34726956 34728380 THE1B-int 1605 + 29 1600 17492 123 3 0 244 5 69 483 3 4 214 56 139 4 0 1 204 0 1 85 chain 28517 chr5 181538259 + 34746773 34747128 THE1A 353 + 0 353 44092 109 2 1 92 1 0 151 chain 3986 chr5 181538259 + 34747234 34747286 MIR 256 + 117 172 91542 16 0 3 36 chain 24926 chr5 181538259 + 34764845 34765197 THE1A 353 + 0 349 49388 15 2 0 32 0 1 46 1 0 17 0 2 6 17 15 68 1 0 147 chain 125746 chr5 181538259 + 34765201 34766779 THE1A-int 1579 + 0 1574 14595 555 1 10 288 0 1 109 8 9 541 1 0 36 14 0 25 chain 222420 chr5 181538259 + 34778856 34781364 L1PA5 6144 + 3614 6132 8971 309 0 1 417 0 4 283 1 0 153 11 9 347 0 1 345 0 3 399 2 0 209 0 6 32 chain 8436 chr5 181538259 + 34802279 34802368 5S 121 + 1 90 73826 89 chain 38033 chr5 181538259 + 34809135 34809618 MER75 514 + 0 498 36051 103 7 4 216 0 18 157 chain 17325 chr5 181538259 + 34876787 34876995 L1PA7 6471 + 6259 6468 59429 149 0 1 59 chain 5288 chr5 181538259 + 34968338 34968408 LTR8 732 + 642 712 84251 24 0 1 4 1 0 41 chain 5883 chr5 181538259 + 34981117 34981227 L1PA16 3655 + 3531 3619 81545 48 3 0 17 14 0 7 5 0 16 chain 44796 chr5 181538259 + 34989898 34990870 MER41B 635 + 5 624 31707 123 0 1 132 1 0 92 1 0 4 5 6 72 34 0 17 17 16 47 318 0 109 chain 8194 chr5 181538259 + 34990882 34990999 MER4E 760 + 637 755 74424 46 8 7 48 0 2 15 chain 5721 chr5 181538259 + 35002652 35002722 MLT1A0 366 + 227 297 82252 70 chain 17360 chr5 181538259 + 35011673 35011909 L1PB3 3668 + 3245 3478 59404 49 1 0 65 6 5 27 1 0 87 chain 458778 chr5 181538259 + 35017638 35022732 L1PA3long 6157 + 1057 6156 4161 2087 1 3 1035 0 1 457 0 1 982 0 1 532 chain 525286 chr5 181538259 + 35075072 35081201 L1PA5 6144 + 0 6144 2034 135 6 20 1014 9 0 58 1 2 1079 8 0 885 0 1 308 4 0 431 0 1 347 0 1 292 0 15 42 0 5 391 3 2 265 1 0 123 1 0 300 0 1 108 0 1 45 1 0 272 chain 18594 chr5 181538259 + 35093721 35093997 Tigger3a 397 + 0 326 58000 76 18 67 71 9 10 102 chain 518314 chr5 181538259 + 35104255 35110374 L1PA5 6144 + 0 6144 2350 120 0 14 373 0 1 429 1 0 15 0 1 216 9 0 65 0 1 35 2 0 163 1 0 13 0 4 785 2 0 5 0 2 67 1 0 4 0 1 114 0 1 866 0 1 241 1 2 40 0 1 330 0 1 338 0 9 400 8 7 606 1 3 20 1 0 707 1 4 139 chain 12544 chr5 181538259 + 35133932 35134179 L1PB1 5432 + 5203 5430 65910 17 2 1 15 1 0 45 1 0 15 1 0 6 16 6 19 2 0 5 4 3 11 2 0 24 1 0 21 1 4 9 1 0 18 2 0 8 chain 4349 chr5 181538259 + 35138238 35138324 L1MB2 1706 + 1598 1684 89174 13 1 0 10 1 0 12 1 2 13 3 4 32 chain 75606 chr5 181538259 + 35176384 35177353 LTR5_Hs 974 + 0 974 22689 169 1 0 120 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 36641 chr5 181538259 + 35237085 35237478 L1PA2 6032 + 5639 6032 36988 393 chain 13830 chr5 181538259 + 35238884 35239070 L1PA16 3655 + 3387 3575 63827 28 4 6 154 chain 28255 chr5 181538259 + 35290330 35290706 THE1C 375 + 0 374 44473 184 12 11 155 1 0 24 chain 228446 chr5 181538259 + 35325753 35329128 L1PA13 3608 + 141 3497 8788 22 1 0 14 4 3 20 25 18 68 8 6 102 0 1 17 1 0 16 1 0 17 2 0 14 11 7 15 1 0 16 6 4 15 2 0 18 1 0 37 10 15 40 6 4 60 6 1 412 12 13 285 0 1 110 0 4 73 0 1 216 0 1 135 1 0 39 0 3 5 1 3 60 1 0 130 36 35 23 2 0 21 14 14 138 1 4 100 6 29 163 8 9 24 2 0 390 1 0 28 1 0 61 0 2 6 1 0 8 23 0 36 3 1 61 1 0 18 0 1 37 1 0 5 3 1 47 12 13 10 1 0 20 0 3 7 chain 21896 chr5 181538259 + 35331078 35331451 THE1B 368 + 0 368 53975 47 0 1 56 94 89 100 1 0 75 chain 22541 chr5 181538259 + 35356442 35356695 AluY 311 + 51 305 53056 75 0 1 178 chain 25869 chr5 181538259 + 35380346 35380710 THE1B 368 + 0 368 47913 118 7 8 46 16 23 24 4 0 149 chain 213035 chr5 181538259 + 35386161 35389595 L1PA13 3608 + 151 3518 9234 12 1 0 14 78 87 24 1 0 4 1 0 114 21 22 17 2 0 17 6 2 17 1 0 15 2 0 20 3 1 14 2 1 20 1 0 78 2 0 285 0 2 39 4 1 25 0 14 50 1 0 5 7 9 100 1 4 26 0 1 41 21 19 8 0 1 98 26 27 70 45 46 100 1 2 222 1 2 106 8 13 15 42 12 14 18 0 253 2 0 3 4 0 7 1 2 151 48 48 135 4 0 80 0 1 195 9 10 114 0 1 145 1 0 28 5 4 110 2 0 61 1 0 30 10 1 25 8 5 33 1 0 14 2 0 5 2 0 19 6 5 11 29 21 14 chain 552049 chr5 181538259 + 35396097 35402235 L1PA3long 6157 + 10 6157 606 1933 0 1 443 0 2 1557 0 1 413 0 4 480 1 0 542 0 2 769 chain 95381 chr5 181538259 + 35445237 35446283 L1PA3long 6157 + 5110 6157 18858 909 0 1 137 chain 16749 chr5 181538259 + 35457726 35458013 THE1D 372 + 73 372 60094 86 24 35 12 17 18 44 4 5 67 1 0 32 chain 398811 chr5 181538259 + 35494184 35499421 L1P2 5180 + 2 5178 5172 107 1 0 4 19 6 16 13 14 98 6 5 25 23 24 11 49 50 145 1 0 8 1 0 39 1 0 60 68 0 58 7 0 101 36 34 14 6 3 5 0 3 98 1 26 213 72 81 83 35 35 3722 1 0 46 1 0 38 1 0 4 chain 35282 chr5 181538259 + 35500000 35500391 L1PA3long 6157 + 5760 6157 37839 380 0 6 11 chain 65116 chr5 181538259 + 35521299 35522399 L1PB1 5432 + 4380 5422 25163 179 21 26 43 3 0 121 0 1 37 7 15 300 0 1 13 116 69 16 5 0 15 1 3 17 1 0 44 1 0 16 2 0 6 16 6 9 0 2 5 2 0 8 1 0 13 2 0 25 1 0 22 1 0 12 1 0 18 chain 126085 chr5 181538259 + 35531444 35532992 LTR12C 1709 + 0 1709 14538 460 6 5 201 0 119 52 1 0 70 3 2 8 1 0 157 0 47 103 0 4 311 2 1 150 11 7 12 chain 18289 chr5 181538259 + 35538230 35538555 MSTA 426 + 4 376 58375 104 16 40 58 4 0 8 37 43 36 3 24 59 chain 3925 chr5 181538259 + 35574297 35574341 MADE1 96 + 2 46 91945 44 chain 207426 chr5 181538259 + 35602413 35605355 L1PB2 3958 + 960 3837 9446 38 0 8 6 5 1 239 14 5 398 0 2 29 0 4 55 0 1 17 3 0 526 17 16 13 1 2 161 1 0 4 23 6 113 0 2 102 1 3 40 8 4 137 4 0 5 6 0 27 2 1 209 23 6 120 0 4 43 2 0 56 1 0 8 1 0 10 4 1 57 2 0 11 5 1 89 2 0 43 4 2 32 1 0 64 1 0 62 21 19 13 1 0 62 chain 26566 chr5 181538259 + 35729662 35730013 THE1A 353 + 0 353 46879 76 8 9 25 1 0 185 0 2 56 chain 389965 chr5 181538259 + 35745983 35751349 L1PB1 5432 + 112 5323 5325 192 0 1 4 1 0 20 0 1 119 0 3 144 0 1 4 2 1 378 0 1 310 0 6 98 1 0 6 14 0 12 6 5 183 0 5 49 0 1 615 0 3 24 0 2 240 0 6 296 1 0 95 37 27 248 30 12 67 1 0 195 18 18 94 1 0 4 0 1 126 2 4 622 0 2 124 25 26 102 8 13 182 38 37 14 0 3 5 8 5 146 3 4 85 123 0 13 3 0 22 1 0 9 16 11 11 3 1 50 0 1 15 6 5 40 1 0 15 1 0 4 2 0 12 9 0 11 chain 24307 chr5 181538259 + 35796325 35796623 AluYk4 311 + 0 295 50320 53 18 14 65 1 0 142 0 2 19 chain 535153 chr5 181538259 + 35911739 35917876 L1PA4 6152 + 0 6151 1613 11 0 1 115 0 14 996 0 1 47 1 2 49 1 0 30 0 1 438 0 1 207 1 0 2071 1 0 60 1 0 621 1 0 37 0 1 227 1 0 1221 chain 55933 chr5 181538259 + 35917881 35918611 L1PA7 6471 + 5703 6459 27582 14 0 7 22 0 24 361 1 0 165 17 13 150 chain 18422 chr5 181538259 + 35993475 35993704 PRIMA4_LTR 623 + 392 622 58204 153 4 5 72 chain 37643 chr5 181538259 + 36058381 36058880 LTR3B_ 500 + 0 500 36311 75 2 1 80 5 6 138 2 3 197 chain 33032 chr5 181538259 + 36060263 36060716 LTR3B_ 500 + 0 466 39491 78 1 0 5 1 0 71 0 6 6 5 0 111 10 14 9 1 2 55 7 11 7 0 5 86 chain 4063 chr5 181538259 + 36082610 36082664 L1M3c 1411 + 615 669 90997 54 chain 13785 chr5 181538259 + 36092239 36092464 MSTA 426 + 182 426 63904 12 15 19 29 16 31 153 chain 35215 chr5 181538259 + 36113026 36113487 LTR2 463 + 0 463 37885 55 0 3 312 14 15 26 1 0 28 1 0 24 chain 8361 chr5 181538259 + 36132712 36132849 L1MA3 4352 - 1797 1946 73994 48 3 8 12 5 0 14 3 15 52 chain 5485 chr5 181538259 + 36155119 36155185 U6 107 + 1 69 83289 35 0 2 31 chain 54972 chr5 181538259 + 36205644 36206294 L1PA6 6164 + 5506 6156 27882 650 chain 29099 chr5 181538259 + 36234092 36234396 AluYg6 310 + 0 304 43190 304 chain 28985 chr5 181538259 + 36295200 36295572 THE1C 375 + 0 375 43356 135 0 4 44 2 3 57 2 0 132 chain 28251 chr5 181538259 + 36298899 36299412 MLT2A1 477 + 0 477 44482 140 1 2 27 1 5 31 1 3 33 28 35 107 21 1 8 16 0 10 43 29 46 chain 34703 chr5 181538259 + 36318610 36319111 L1M1 2793 + 1270 1754 38220 190 28 4 131 5 0 7 8 20 132 chain 52259 chr5 181538259 + 36320999 36322179 L1PA2 6032 + 4855 6032 28798 405 5 0 756 0 2 14 chain 36784 chr5 181538259 + 36407963 36408543 L1MA2 4263 + 2260 2837 36895 338 0 1 42 9 7 35 14 14 18 65 63 59 chain 8383 chr5 181538259 + 36412675 36412776 L1MC1 2226 + 178 279 73937 101 chain 39886 chr5 181538259 + 36454474 36454943 LTR10F 562 + 0 562 34749 161 0 93 308 chain 55766 chr5 181538259 + 36466741 36467419 L1P3 4156 + 1739 2424 24431 268 2 1 5 0 1 311 0 7 92 chain 324423 chr5 181538259 + 36467419 36471448 L1PA8 5853 + 1813 5853 6327 158 0 1 915 6 5 165 3 0 312 0 1 216 0 1 106 0 5 127 10 11 146 0 1 366 0 5 71 1 5 11 0 1 7 14 6 39 0 4 93 1 2 172 0 1 171 14 15 35 0 4 19 2 0 74 0 2 331 1 0 147 2 1 36 9 7 70 2 1 9 2 1 51 2 1 19 1 0 93 chain 232126 chr5 181538259 + 36473743 36476460 L1PA6 6164 + 3421 6162 8689 7 1 0 200 0 2 52 0 1 173 2 0 506 0 4 122 4 29 530 1 0 248 0 1 362 0 1 65 6 0 438 chain 21663 chr5 181538259 + 36486339 36486722 THE1D 372 + 0 372 54277 53 38 26 87 45 47 11 1 0 148 chain 517942 chr5 181538259 + 36508023 36514170 L1PA6 6164 + 0 6161 2370 235 33 4 278 0 2 48 1 0 111 0 1 119 1 18 111 1 0 1407 0 1 21 0 2 163 1 0 385 1 0 51 0 1 420 3 7 66 0 1 250 0 1 582 1 3 361 1 0 663 0 4 101 0 8 32 8 10 208 0 2 484 chain 22446 chr5 181538259 + 36615926 36616203 AluSg7 307 + 11 290 53206 120 0 1 72 0 1 4 1 0 70 0 1 10 chain 64149 chr5 181538259 + 36747361 36748059 L1PA4 6152 + 5183 5881 25381 698 chain 26550 chr5 181538259 + 36752255 36752619 MLT2A1 477 + 8 385 46898 7 0 4 103 18 19 28 0 4 22 2 1 46 0 5 138 chain 119608 chr5 181538259 + 36782399 36783967 LTR12C 1709 + 0 1709 15591 297 0 1 352 0 278 184 1 0 4 4 2 106 0 4 157 2 0 66 5 0 140 132 0 118 chain 29299 chr5 181538259 + 36783987 36784359 MER48 407 + 0 390 42895 30 0 1 5 1 0 65 1 0 48 0 19 222 chain 139554 chr5 181538259 + 36811316 36812879 L1PA4 6152 + 3632 5221 13131 1159 0 26 404 chain 420844 chr5 181538259 + 36848506 36853420 L1PA6 6164 + 1213 6162 4870 1068 0 1 46 1 2 266 0 3 584 1 2 4 0 1 339 0 1 166 2 0 5 0 4 1683 0 3 292 0 18 125 0 1 163 0 2 67 0 3 94 2 0 6 chain 66833 chr5 181538259 + 36892181 36892951 L1PA5 6144 + 5374 6141 24738 12 0 3 642 1 0 92 1 0 12 4 0 6 chain 20218 chr5 181538259 + 37084800 37086379 L1PBa 3878 + 1715 2354 13191 186 941 0 225 0 4 50 1 2 88 4 0 84 chain 247272 chr5 181538259 + 37089364 37093731 HERVK22-int 3844 + 5 3810 8297 33 3 0 361 0 2 233 1 0 26 2 3 101 10 123 85 41 40 69 0 1 247 0 1 4 12 11 235 6 5 146 16 19 138 5 12 179 0 3 37 16 0 158 8 4 561 10 11 195 1 0 70 2 1 5 1 0 18 1 0 36 1 0 20 2 0 39 4 0 10 1 0 45 2 0 14 27 16 11 2 0 5 2 0 6 4 0 11 1 0 8 66 48 19 11 7 25 829 219 69 1 0 60 chain 17734 chr5 181538259 + 37094268 37095653 L1PBa 3878 + 2354 3748 13191 54 0 4 22 0 3 20 0 1 5 1 0 244 7 8 110 1 2 221 0 1 116 7 8 15 1 0 33 3 0 385 8 13 96 2 1 22 2 0 10 chain 109923 chr5 181538259 + 37128460 37130382 L1PB1 5432 + 3794 5427 17085 18 6 8 4 1 0 60 0 27 24 304 0 116 0 2 157 0 2 252 7 11 60 0 2 92 0 2 12 21 20 91 1 0 8 12 16 325 20 16 15 1 0 10 1 0 13 6 2 9 2 0 52 2 1 14 0 10 34 50 37 11 2 0 5 1 0 4 15 12 22 1 0 21 1 0 13 1 0 14 1 0 5 1 0 4 chain 11022 chr5 181538259 + 37140816 37140962 MER30 238 + 74 230 68523 29 10 20 107 chain 16933 chr5 181538259 + 37252115 37252628 MSTA 426 + 29 426 59873 97 4 5 63 126 1 13 8 11 19 40 40 14 1 0 8 65 71 55 chain 128587 chr5 181538259 + 37295043 37296688 SVA_C 1631 + 21 1613 14208 15 0 5 12 0 1 51 0 3 432 40 0 106 0 40 171 5 0 7 1 0 3 1 0 32 1 0 4 46 15 32 3 0 9 1 0 43 2 0 5 2 1 10 1 0 233 3 1 160 10 0 70 3 0 131 chain 2000 chr5 181538259 + 37295924 37295949 SVA_C 1631 + 1041 1066 70915 25 chain 22912 chr5 181538259 + 37331301 37331578 AluSp 311 + 10 286 52493 11 1 0 265 chain 10801 chr5 181538259 + 37375946 37376121 MER30 238 + 35 236 68857 68 4 0 7 15 48 41 3 0 37 chain 14511 chr5 181538259 + 37376879 37377048 MER75 514 + 95 264 62889 169 chain 26710 chr5 181538259 + 37427107 37427416 AluYk4 311 + 0 309 46672 309 chain 210561 chr5 181538259 + 37445525 37447931 L1PA5 6144 + 3717 6128 9335 413 0 1 116 1 0 4 0 1 1020 2 1 18 0 4 290 4 5 538 chain 124665 chr5 181538259 + 37459372 37460699 L1HS 6032 + 4701 6028 14750 1327 chain 3838 chr5 181538259 + 37494924 37495076 MER58A 224 + 29 181 92580 34 1 0 14 83 84 20 chain 503645 chr5 181538259 + 37522504 37528269 L1PA5 6144 + 3 5774 3006 683 1 2 35 1 0 1300 2 1 287 0 2 63 0 1 659 1 0 207 1 0 37 1 0 593 0 1 424 1 0 43 0 4 283 1 0 7 1 0 447 0 1 208 0 4 479 chain 4850 chr5 181538259 + 37534086 37534143 L1PBa 3878 + 316 373 86423 57 chain 40131 chr5 181538259 + 37601754 37602232 L1PA7 6471 + 5994 6468 34569 125 0 1 337 5 0 11 chain 23129 chr5 181538259 + 37635751 37636122 THE1C 375 + 0 375 52173 76 0 6 104 8 7 10 39 39 108 6 5 20 chain 516903 chr5 181538259 + 37688713 37694840 L1PA6 6164 + 0 6149 2422 147 2 0 420 1 0 27 0 1 501 0 1 492 0 3 538 15 0 203 0 1 67 0 4 28 0 3 24 0 1 58 0 2 61 0 4 360 0 1 155 6 11 84 0 1 233 11 0 274 0 2 187 0 1 4 1 0 247 1 0 35 0 1 188 0 4 126 0 2 345 0 5 299 3 5 159 1 5 13 7 10 507 0 2 297 chain 475308 chr5 181538259 + 37743105 37749546 L1PA8A 6298 + 40 6290 3744 18 2 1 5 3 0 9 34 29 17 20 11 6 1 0 12 1 0 8 36 33 15 2 0 4 1 0 12 53 37 8 1 0 49 1 0 14 8 2 10 1 10 4 0 1 53 2 0 13 2 1 10 1 0 3 1 0 626 16 15 23 0 4 327 8 5 11 1 0 443 0 12 174 3 0 188 0 3 101 4 0 383 5 9 272 1 0 293 0 5 43 1 0 69 0 4 273 1 2 145 9 8 100 1 0 4 4 5 97 232 2 263 0 13 500 1 0 70 0 1 30 0 22 37 3 7 230 2 0 93 1 0 139 5 12 70 0 2 392 15 20 35 0 1 53 0 1 62 0 8 33 7 0 7 1 8 23 7 12 13 0 1 51 chain 31814 chr5 181538259 + 37793304 37793724 MLT2A1 477 + 0 477 40482 59 0 6 103 5 2 225 1 43 8 0 8 13 0 4 6 chain 341913 chr5 181538259 + 37793724 37798205 HERVL-int 5654 + 0 4171 6023 145 1 0 25 0 2 1020 0 1 184 318 0 107 17 0 10 1 2 121 6 7 154 1 5 392 4 0 378 0 22 660 5 7 79 0 1 280 1 2 52 0 1 89 6 0 425 chain 5128 chr5 181538259 + 37799794 37799852 MER45A 178 + 112 170 85031 58 chain 71545 chr5 181538259 + 37910999 37912033 L1MA2 4263 + 3012 4040 23645 5 3 0 240 0 3 174 10 3 87 0 1 41 1 0 18 6 2 40 0 3 33 1 0 79 0 1 51 17 14 63 1 3 51 29 33 9 1 0 74 chain 6845 chr5 181538259 + 37918414 37918494 L1PA8 5853 + 5769 5849 78157 80 chain 43812 chr5 181538259 + 37959280 37959793 MER9a3 513 + 0 513 32242 15 1 2 154 1 0 342 chain 6426 chr5 181538259 + 38000001 38000147 MER58B 340 + 130 289 79587 69 53 66 24 chain 4448 chr5 181538259 + 38048542 38048592 MLT1J1 437 + 46 96 88618 50 chain 46584 chr5 181538259 + 38099604 38100231 MER41B 635 + 0 627 30817 127 1 2 269 4 3 60 0 7 6 15 7 26 0 1 119 chain 69532 chr5 181538259 + 38146278 38147242 Tigger3b 1229 + 219 1219 24114 6 1 0 28 23 38 4 1 0 16 0 2 15 2 0 8 0 5 228 1 0 4 1 13 180 3 0 214 0 10 158 0 2 42 5 3 24 chain 20026 chr5 181538259 + 38181587 38181831 L1PA7 6471 + 6227 6470 56352 45 2 0 35 1 2 161 chain 190650 chr5 181538259 + 38221843 38224917 L1PA4 6152 + 3385 6143 10081 61 1 0 1188 0 1 209 7 0 44 891 583 531 1 0 141 chain 115433 chr5 181538259 + 38234257 38235821 THE1C-int 1605 + 18 1574 16323 74 0 1 22 1 55 48 0 1 226 84 11 63 1 0 229 4 13 29 3 4 780 chain 7277 chr5 181538259 + 38442754 38442869 MER41D 557 + 0 114 76746 43 6 2 50 0 5 8 2 0 6 chain 73315 chr5 181538259 + 38516305 38517210 L1PA7 6471 + 5553 6465 23256 68 2 0 18 1 0 54 4 12 603 5 6 106 10 11 34 chain 52511 chr5 181538259 + 38518434 38519331 Tigger3b 1229 + 24 954 28728 141 3 4 19 34 37 69 1 0 30 8 10 103 0 1 125 14 16 38 0 7 31 0 2 36 8 6 11 6 8 49 63 67 12 6 18 90 chain 40127 chr5 181538259 + 38599796 38600391 MER4B 649 + 0 640 34574 24 36 37 90 6 48 40 2 0 95 0 13 17 5 0 60 2 1 50 2 1 88 1 0 69 1 0 7 chain 37268 chr5 181538259 + 38620878 38621288 L1PA4 6152 + 5741 6151 36572 410 chain 28526 chr5 181538259 + 38644468 38644843 THE1C 375 + 2 375 44078 123 9 6 56 0 1 187 chain 23062 chr5 181538259 + 38663761 38664045 AluSc 308 + 8 294 52271 144 7 9 133 chain 490266 chr5 181538259 + 38699828 38706043 L1PA7 6471 + 495 6453 3415 125 8 6 72 2 0 279 0 1 166 0 1 90 0 4 32 7 5 57 5 6 5 0 1 960 5 13 552 0 1 225 1 0 41 0 1 18 314 0 97 0 8 505 0 1 169 1 0 637 1 0 3 0 1 94 0 4 143 0 4 285 0 27 487 1 0 39 0 1 475 0 1 174 3 5 137 chain 27988 chr5 181538259 + 38759626 38760239 L1PB1 5432 + 4931 5424 44888 89 0 2 81 97 3 8 3 0 24 1 0 9 27 20 53 2 1 16 1 0 42 2 1 16 1 0 4 1 0 13 42 34 26 1 0 18 1 0 13 1 0 16 1 0 4 chain 41457 chr5 181538259 + 38763272 38763811 MLT2A2 560 + 9 560 33704 167 4 3 148 1 0 4 0 1 65 5 16 8 0 1 35 0 1 102 chain 117011 chr5 181538259 + 38785915 38787526 THE1B-int 1605 + 18 1605 16053 95 5 8 309 38 21 170 9 11 50 1 0 6 30 31 80 14 1 180 0 1 138 7 8 5 1 0 56 9 8 211 0 1 197 chain 86827 chr5 181538259 + 38821729 38822987 LTR12D 1347 + 6 1347 20255 233 13 42 16 0 36 203 0 31 17 41 0 53 41 0 72 23 0 130 12 7 140 0 97 264 chain 3632 chr5 181538259 + 38822305 38822346 LTR12D 1347 + 487 528 83273 41 chain 24888 chr5 181538259 + 38868373 38868718 THE1A 353 + 9 353 49458 102 1 0 60 10 10 46 8 8 118 chain 6462 chr5 181538259 + 38907035 38907139 L1P4 1494 + 271 391 79475 35 8 23 5 3 0 11 0 4 42 chain 18900 chr5 181538259 + 38968754 38970167 Tigger3b 1229 + 338 1145 57639 28 106 97 54 0 2 11 1015 410 51 0 2 12 5 9 131 chain 2989 chr5 181538259 + 38974965 38974998 MADE1 96 + 7 40 99960 33 chain 151936 chr5 181538259 + 38988607 38990492 L1PA7 6471 + 4549 6466 12233 122 0 4 280 0 1 262 3 0 65 7 0 8 0 7 28 0 13 282 0 3 269 2 1 71 7 17 57 0 1 4 4 3 84 1 0 174 7 0 8 0 15 131 2 0 7 chain 3653 chr5 181538259 + 38995160 38995200 L1PB2 3958 + 3798 3838 93982 40 chain 113858 chr5 181538259 + 39010422 39012009 THE1C-int 1605 + 15 1599 16570 27 5 6 49 1 59 17 2 0 272 86 12 145 1 0 84 14 39 8 19 0 12 0 9 282 1 2 136 1 0 369 0 1 5 6 5 45 chain 12253 chr5 181538259 + 39022087 39022246 MER47A 366 + 165 323 66365 153 1 0 5 chain 510732 chr5 181538259 + 39034329 39040064 L1PA4 6152 + 0 5738 2734 708 12 5 613 9 12 102 0 3 2030 1 0 881 0 4 427 0 1 952 chain 28562 chr5 181538259 + 39070183 39070492 AluYb8 318 + 0 305 44014 118 4 0 187 chain 16677 chr5 181538259 + 39092006 39092352 THE1D 372 + 15 372 60178 41 31 23 85 61 75 31 8 18 32 5 0 52 chain 2394 chr5 181538259 + 39144347 39144471 L1MC5 759 + 585 710 104180 15 29 32 15 43 41 22 chain 7314 chr5 181538259 + 39166473 39166562 L1PB4 2604 + 2268 2357 76623 89 chain 17704 chr5 181538259 + 39198514 39198762 MER47A 366 + 0 287 59002 8 1 0 4 0 1 21 1 0 50 4 43 145 0 1 14 chain 48182 chr5 181538259 + 39234465 39235050 L1PA8 5853 + 5267 5848 30227 297 1 0 20 0 2 24 2 0 69 1 0 9 1 0 72 1 0 88 chain 18791 chr5 181538259 + 39261068 39261285 L1PA8A 6298 + 6072 6289 57797 217 chain 28061 chr5 181538259 + 39272991 39273320 SVA_D 2077 + 1182 1740 44775 37 5 234 287 chain 118135 chr5 181538259 + 39333622 39334995 SVA_D 2077 + 45 1740 15865 829 40 0 33 0 136 10 0 1 122 0 225 339 chain 533559 chr5 181538259 + 39343068 39349181 L1PA5 6144 + 18 6143 1677 11 0 2 197 0 1 4 1 0 179 0 2 12 0 1 432 0 1 363 0 1 593 0 1 326 2 1 536 0 3 1794 0 2 142 0 1 1372 1 0 148 chain 23691 chr5 181538259 + 39367427 39367717 AluSq10 312 + 0 288 51288 111 3 1 176 chain 5183 chr5 181538259 + 39435276 39435588 MLT1C 463 + 73 388 84758 41 160 165 19 59 57 33 chain 20956 chr5 181538259 + 39438294 39438658 THE1B 368 + 3 368 55184 67 54 53 49 24 25 32 0 2 62 1 0 75 chain 44411 chr5 181538259 + 39553303 39553803 L1PA4 6152 + 5651 6151 31879 500 chain 3313 chr5 181538259 + 39576668 39576823 L1ME1 1623 + 181 335 96895 35 102 101 18 chain 4382 chr5 181538259 + 39585844 39585942 MADE1 96 - 0 96 88984 46 29 27 23 chain 7123 chr5 181538259 + 39644497 39644620 L1P4 1494 + 1324 1443 77183 26 1 0 40 2 0 20 13 12 21 chain 65062 chr5 181538259 + 39653633 39654776 HUERS-P3b-int 2065 + 94 1347 25174 124 33 0 96 0 1 120 0 10 128 4 5 109 4 0 66 0 1 4 21 19 51 1 0 22 1 0 173 0 139 30 0 1 7 4 1 19 1 2 125 chain 22854 chr5 181538259 + 39725113 39725393 AluSp 311 + 34 303 52570 254 11 0 15 chain 37334 chr5 181538259 + 39753886 39754328 L1PA7 6471 + 6015 6457 36528 442 chain 560394 chr5 181538259 + 39787652 39793671 L1PA2 6032 + 3 6021 162 739 1 0 5279 chain 9665 chr5 181538259 + 39811986 39812215 Tigger4b 360 + 3 249 71129 33 78 95 32 0 1 7 6 5 73 chain 47837 chr5 181538259 + 39904436 39904996 L1PA5 6144 + 5569 6138 30347 166 0 8 62 0 1 332 chain 331025 chr5 181538259 + 39907315 39911248 L1PA5 6144 + 0 6138 6199 47 0 11 79 1 2 86 1 2 123 11 12 559 0 4 906 6 2183 181 0 2 147 0 4 1027 0 2 113 0 1 319 1 2 177 0 7 10 8 1 131 chain 79771 chr5 181538259 + 39916637 39917514 L1PA3long 6157 + 5277 6156 21674 109 0 2 768 chain 3544 chr5 181538259 + 39927400 39927439 MER73 639 + 585 624 94917 39 chain 267611 chr5 181538259 + 39951074 39954730 L1PA10 4194 + 313 4161 7774 22 2 0 11 9 8 9 1 0 11 1 0 6 1 0 15 7 0 8 1 0 84 3 0 10 6 3 115 3 0 5 0 3 76 0 1 186 1 0 293 11 1 276 7 208 74 0 1 249 8 9 57 0 1 157 0 15 402 0 1 33 4 0 18 12 13 14 1 3 22 0 1 452 6 1 96 15 16 211 0 1 38 3 4 109 2 0 294 0 1 118 1 11 25 9 5 34 1 0 11 chain 12283 chr5 181538259 + 39980258 39980440 MER107 203 + 0 188 66311 39 0 6 8 6 0 111 1 7 17 chain 53028 chr5 181538259 + 40012899 40013491 L1PA5 6144 + 5551 6143 28563 592 chain 137752 chr5 181538259 + 40090893 40092755 MER4-int 2692 + 794 2692 13283 62 4 0 10 0 4 76 0 1 38 0 1 24 0 5 52 1 8 27 1 0 288 1 17 58 10 11 45 1 5 43 0 1 182 1 3 38 0 1 97 2 1 109 3 0 271 1 0 10 2 4 175 0 1 230 chain 82048 chr5 181538259 + 40102908 40103968 MER11C 1089 + 0 1073 21232 251 8 9 57 0 4 214 2 1 154 0 4 42 1 2 152 0 1 76 16 15 28 1 5 58 chain 84798 chr5 181538259 + 40105159 40110718 HERVK11-int 2540 + 678 2235 20662 59 147 97 44 1 0 13 1 0 14 3964 80 16 59 43 21 2 0 65 10 9 23 19 18 8 3 0 27 11 1 12 1 0 25 14 3 26 25 8 420 25 20 68 1 0 37 1 0 183 13 12 69 16 20 116 chain 88569 chr5 181538259 + 40111708 40112770 MER11C 1089 + 0 1073 19928 251 0 1 65 0 4 369 0 4 43 0 1 148 0 1 186 chain 30621 chr5 181538259 + 40173695 40174193 LTR2B 499 + 0 499 41448 14 1 0 35 25 37 21 6 5 6 6 0 4 2 0 128 5 0 7 1 6 45 0 1 32 7 6 70 1 0 82 chain 274595 chr5 181538259 + 40178369 40182174 L1PA7 6471 + 3026 6467 7588 40 0 2 27 1 5 252 1 2 5 1 0 137 2 1 25 314 0 291 1 4 1008 7 0 145 85 28 294 0 1 328 0 3 9 0 2 429 1 0 230 0 1 85 0 3 75 3 0 9 chain 13398 chr5 181538259 + 40207538 40207829 L1MA7 2200 + 1831 2084 64478 118 89 62 39 11 0 34 chain 4919 chr5 181538259 + 40251272 40251328 MLT1A0 366 + 273 329 86063 56 chain 501464 chr5 181538259 + 40335911 40342040 L1PA6 6164 + 0 6162 3080 60 1 4 383 16 6 81 1 2 23 10 12 226 5 22 319 1 0 323 0 1 85 0 12 158 8 5 1052 0 5 394 0 2 4 1 0 249 8 6 120 1 2 146 0 2 945 2 6 300 1 0 703 0 1 503 chain 24248 chr5 181538259 + 40363849 40364242 MSTA 426 + 0 426 50420 15 7 12 69 7 8 8 0 12 8 0 8 26 8 15 17 28 28 200 chain 20161 chr5 181538259 + 40364357 40364919 ERVL-B4-int 2334 + 140 709 56180 40 12 20 65 53 51 23 4 6 55 93 92 53 16 15 22 2 0 42 60 63 22 chain 43593 chr5 181538259 + 40425273 40425769 MER9a2 513 + 13 513 32389 443 0 4 53 chain 120626 chr5 181538259 + 40438478 40439910 LTR12C 1709 + 1 1697 15428 649 0 278 159 13 0 24 1 0 5 3 1 107 0 4 22 1 0 106 1 0 341 chain 6296 chr5 181538259 + 40458117 40458316 MSTD 398 + 114 327 80013 55 109 123 35 chain 5804 chr5 181538259 + 40494523 40494647 L1PB1 5432 + 5109 5209 81899 5 3 0 22 1 0 20 23 5 7 2 0 41 chain 29546 chr5 181538259 + 40509921 40510263 L1PA5 6144 + 5800 6142 42551 342 chain 558695 chr5 181538259 + 40541305 40547335 L1PA2 6032 + 0 6030 208 6030 chain 40833 chr5 181538259 + 40551357 40551898 MLT2A2 560 + 0 559 34076 38 1 0 368 9 20 40 2 8 15 0 1 36 0 1 32 chain 14013 chr5 181538259 + 40578860 40579064 L1PA8 5853 + 5653 5853 63574 27 1 0 8 1 0 52 2 1 18 11 10 84 chain 9849 chr5 181538259 + 40630037 40630146 L1PA3long 6157 + 5299 5408 70723 109 chain 17527 chr5 181538259 + 40632847 40633089 L1PB1 5432 + 4858 5103 59207 203 21 24 18 chain 503136 chr5 181538259 + 40634173 40640414 L1PA7 6471 + 0 6461 3027 219 0 10 13 0 1 549 0 1 75 0 2 266 16 17 76 1 5 431 4 5 76 8 7 499 0 1 118 4 5 57 10 6 245 4 7 4 0 1 880 4 6 151 0 2 204 0 1 83 0 13 23 0 175 396 0 1 37 0 4 97 0 24 9 25 2 576 0 1 9 0 2 274 0 3 31 0 2 54 0 1 425 18 9 270 chain 17029 chr5 181538259 + 40641845 40642136 Tigger2b_Pri 1066 + 766 1066 59778 86 15 18 32 1 8 96 29 28 32 chain 8002 chr5 181538259 + 40652238 40652333 MER21A 919 + 477 572 74883 95 chain 30613 chr5 181538259 + 40662237 40662645 L1PA8 5853 + 5450 5848 41456 9 1 0 104 2 1 40 6 4 71 1 0 21 3 0 40 2 1 19 1 0 88 chain 90691 chr5 181538259 + 40663561 40664557 L1PA3long 6157 + 5161 6157 19552 996 chain 238205 chr5 181538259 + 40701810 40705568 L1PA14 3548 + 67 3485 8516 6 1 0 10 12 7 44 0 1 13 4 0 69 1 0 17 8 7 12 0 1 13 4 1 29 14 12 12 7 11 138 0 2 92 0 1 86 0 10 18 0 1 6 2 1 118 6 7 217 1 0 253 0 2 90 0 1 31 0 5 22 12 21 43 7 0 13 22 36 338 341 0 105 4 0 105 0 1 4 2 1 52 0 2 38 7 8 301 0 8 26 11 10 131 6 7 4 0 1 232 0 2 5 16 12 14 2 0 47 9 5 109 13 9 8 2 0 6 1 0 84 1 0 111 14 9 38 4 2 12 1 0 3 1 0 18 1 0 42 15 8 21 chain 350220 chr5 181538259 + 40706767 40710710 L1PA5 6144 + 1717 5767 5907 459 2 1 2616 0 108 866 chain 106243 chr5 181538259 + 40722206 40723453 SVA_B 1603 + 307 1603 17537 29 0 14 317 0 40 180 1 0 42 1 0 28 4 5 16 3 0 12 1 0 177 0 3 427 3 0 6 chain 32114 chr5 181538259 + 40794741 40795342 L1PB1 5432 + 4834 5387 40260 120 6 24 125 9 2 7 27 0 26 1 0 9 30 23 59 12 8 44 1 0 15 4 0 7 14 5 19 11 8 11 2 0 24 1 0 17 chain 103282 chr5 181538259 + 40800410 40801791 SVA_E 1901 + 669 1901 17920 49 1 2 6 0 80 6 1 0 5 1 0 41 146 0 69 3 0 64 78 0 104 1 0 806 chain 1669 chr5 181538259 + 40800520 40800546 SVA_E 1901 + 1156 1183 52585 22 0 1 4 chain 9630 chr5 181538259 + 40800559 40800666 SVA_E 1901 + 923 1030 34837 35 8 7 10 0 1 54 chain 7020 chr5 181538259 + 40800802 40800880 SVA_E 1901 + 1166 1244 34837 78 chain 21002 chr5 181538259 + 40807829 40808122 AluSc8 310 + 1 299 55116 43 8 2 86 11 14 59 0 8 86 chain 12338 chr5 181538259 + 40855385 40856370 THE1D 372 + 0 372 66240 21 0 2 33 18 11 89 783 175 41 chain 83962 chr5 181538259 + 40864386 40865439 MER11A 1151 + 0 1151 20813 55 0 99 140 4 0 32 0 2 115 0 1 93 1 2 20 1 0 126 6 5 115 2 1 56 3 0 24 0 6 193 1 0 66 chain 39297 chr5 181538259 + 40867929 40868447 MER41A 554 + 15 554 35153 24 0 1 275 1 0 4 1 2 25 0 4 47 12 28 129 chain 126748 chr5 181538259 + 40881823 40883389 THE1A-int 1579 + 0 1579 14442 15 0 2 451 4 8 150 1 0 782 1 8 150 0 1 12 chain 233623 chr5 181538259 + 40895383 40898205 L1P2 5180 + 4 2847 8644 146 1 0 9 1 0 4 2 3 27 8 7 34 0 2 11 1 0 267 0 1 48 1 0 13 0 2 209 1 0 6 1 0 61 0 13 190 1 0 626 0 2 475 0 1 238 0 6 155 1 0 148 6 8 131 chain 164262 chr5 181538259 + 40898533 40900449 L1PA6 6164 + 4245 6162 11468 369 9 8 866 0 2 422 1 2 71 1 0 177 chain 49009 chr5 181538259 + 41006146 41006973 L1PB1 5432 + 4626 5422 29951 171 0 1 4 1 8 7 11 0 86 6 9 191 1 2 9 3 0 24 8 6 12 2 0 3 2 0 9 2 0 52 19 17 45 1 0 11 68 53 24 1 0 22 1 0 12 1 0 18 chain 533790 chr5 181538259 + 41022073 41028195 L1PA5 6144 + 3 6140 1668 638 7 13 417 0 1 453 0 9 405 1 0 1093 0 1 649 1 0 346 0 1 599 1 0 911 0 1 591 1 0 9 chain 12032 chr5 181538259 + 41030327 41030496 L1PB 1623 + 1215 1413 66791 30 5 34 134 chain 72911 chr5 181538259 + 41090426 41091270 L1PA7 6471 + 5628 6468 23333 685 0 1 147 5 0 7 chain 50549 chr5 181538259 + 41137224 41137796 L1PA3long 6157 + 3846 4419 29366 100 0 1 472 chain 515358 chr5 181538259 + 41205257 41211396 L1PA5 6144 + 2 6142 2500 133 10 24 255 5 6 137 0 1 77 0 1 533 9 0 766 1 0 817 0 3 73 0 5 982 15 16 486 24 28 18 0 1 972 20 1 34 7 6 141 0 1 159 5 5 348 1 0 111 chain 68876 chr5 181538259 + 41225721 41226482 L1PA4 6152 + 4759 5520 24238 761 chain 186873 chr5 181538259 + 41236405 41238431 L1PA2 6032 + 2694 4720 10259 2026 chain 21693 chr5 181538259 + 41242129 41242498 THE1D 372 + 0 360 54235 15 0 2 5 2 0 10 1 0 19 9 0 23 7 6 58 0 1 27 44 45 149 chain 12667 chr5 181538259 + 41256298 41256441 L1PA2 6032 + 5889 6032 65687 143 chain 260075 chr5 181538259 + 41318012 41322214 L1MA1 4479 + 311 4142 7968 42 1 0 65 0 2 346 0 3 11 4 0 13 2 6 84 0 1 37 1 2 289 37 21 165 2 0 5 4 6 103 0 4 147 0 2 418 0 1 87 4 6 11 4 0 24 0 1 140 2 1 100 5 2 125 0 4 8 36 19 55 2 1 84 324 0 19 3 1 32 1 0 58 6 3 94 1 0 26 2 0 103 1 4 60 25 23 76 1 0 10 10 6 53 2 1 47 0 9 13 12 8 78 5 4 38 2 0 89 0 5 72 43 45 6 1 0 4 1 0 12 7 6 28 0 1 43 21 11 21 1 0 86 1 0 5 3 0 126 1 0 29 2 0 35 chain 263830 chr5 181538259 + 41330184 41333104 L1PA3long 6157 + 3232 6157 7859 387 0 1 733 0 4 1800 chain 18580 chr5 181538259 + 41393317 41393637 L1MA1 4479 + 242 564 58019 37 2 0 73 0 1 33 6 5 51 50 54 68 chain 19501 chr5 181538259 + 41527769 41528131 THE1B 368 + 0 368 57024 111 6 7 51 78 84 53 7 6 56 chain 17402 chr5 181538259 + 41529002 41529343 MER4B 649 + 0 409 59347 24 2 0 6 2 0 17 1 0 8 19 21 32 8 9 19 30 81 122 4 19 9 0 4 38 chain 33659 chr5 181538259 + 41549702 41550083 L1PA4 6152 + 5762 6143 38957 381 chain 19771 chr5 181538259 + 41550153 41550599 L1PREC2 3366 + 2628 3034 56710 125 11 9 44 1 0 44 1 0 4 68 52 11 11 9 24 45 28 28 6 4 13 0 1 10 chain 43642 chr5 181538259 + 41551747 41552533 L1PREC2 3366 + 2293 3042 32359 216 21 21 52 19 23 146 6 4 51 2 1 43 1 0 4 3 0 7 38 30 9 2 0 5 4 1 14 4 2 21 0 1 8 4 0 11 22 8 35 8 6 30 chain 62320 chr5 181538259 + 41599344 41600018 L1HS 6032 + 5362 6032 25793 659 4 0 11 chain 78977 chr5 181538259 + 41633992 41635056 MER11C 1089 + 0 1063 21879 246 0 9 58 0 4 69 1 0 146 62 63 93 0 4 7 1 0 38 0 1 119 0 2 35 24 4 165 chain 3011 chr5 181538259 + 41659353 41659385 MLT2A1 477 + 28 60 99738 32 chain 42862 chr5 181538259 + 41714426 41714959 L1PA7 6471 + 5934 6465 32858 5 1 0 369 25 24 133 chain 39168 chr5 181538259 + 41729468 41729930 L1PA5 6144 + 5683 6132 35236 366 18 5 78 chain 134705 chr5 181538259 + 41744747 41746293 L1PA5 6144 + 2304 3873 13570 165 0 14 50 4 12 94 0 1 116 7 6 388 0 2 573 1 0 148 chain 43017 chr5 181538259 + 41814400 41814880 L1PA3long 6157 + 5670 6152 32763 12 0 2 468 chain 188168 chr5 181538259 + 41846996 41849066 L1PA3long 6157 + 3210 5278 10202 713 4 5 505 2 0 208 1 0 637 chain 73130 chr5 181538259 + 41945412 41946274 MER11D 897 + 0 897 23290 38 0 1 279 1 6 90 5 11 162 0 23 287 chain 4100 chr5 181538259 + 41948059 41948133 MER3 215 + 115 198 90770 37 13 22 24 chain 197697 chr5 181538259 + 41948847 41951224 L1PA7 6471 + 4092 6469 9789 38 0 1 4 2 1 359 7 8 44 5 0 127 0 4 890 0 1 41 5 4 86 0 2 353 0 1 403 3 0 10 chain 96747 chr5 181538259 + 42029918 42030984 L1PA4 6152 + 4451 5517 18686 1066 chain 536481 chr5 181538259 + 42078293 42084305 L1PA3long 6157 + 10 6157 1532 143 0 1 157 1 0 465 0 128 145 0 2 2834 0 6 2013 1 0 253 chain 51093 chr5 181538259 + 42099751 42100377 LTR14B 630 + 0 630 29194 18 0 1 4 1 0 456 0 1 60 1 4 86 chain 52537 chr5 181538259 + 42111134 42111830 LTR12_ 688 + 0 665 28717 171 24 0 160 15 10 133 2 0 191 chain 54028 chr5 181538259 + 42117239 42117899 LTR12_ 688 + 7 665 28218 508 2 0 150 chain 21752 chr5 181538259 + 42125838 42126229 THE1B 368 + 0 368 54168 44 63 39 24 13 14 46 8 7 133 1 3 4 1 0 54 chain 99682 chr5 181538259 + 42166611 42167674 L1HS 6032 + 4246 5309 18337 1063 chain 34530 chr5 181538259 + 42179940 42180388 L1PA8 5853 + 5409 5853 38337 151 1 0 39 0 1 8 2 0 72 1 0 60 2 1 19 1 0 10 0 1 82 chain 5053 chr5 181538259 + 42180598 42180677 MADE1 96 + 1 96 85399 32 1 17 29 0 1 4 1 0 12 chain 30114 chr5 181538259 + 42266388 42266813 L1PA7 6471 + 3465 3882 41928 69 9 10 56 5 6 221 11 0 9 1 2 44 chain 22105 chr5 181538259 + 42286789 42287166 THE1D 372 + 11 372 53688 58 26 7 31 1 2 4 1 0 53 33 34 33 5 7 132 chain 38522 chr5 181538259 + 42298012 42298453 L1PA5 6144 + 5692 6134 35691 12 0 1 429 chain 6883 chr5 181538259 + 42299757 42299839 MLT1B 390 + 289 371 78015 82 chain 5856 chr5 181538259 + 42334008 42334073 THE1C-int 1605 + 1533 1598 81669 65 chain 22670 chr5 181538259 + 42334080 42334425 THE1C 375 + 0 345 52866 107 17 18 54 0 2 5 0 1 7 27 23 128 chain 109252 chr5 181538259 + 42347278 42348868 THE1B-int 1605 + 0 1590 17150 21 0 1 31 0 1 58 52 0 177 5 7 121 1 0 5 7 32 135 1 2 258 17 36 28 7 11 15 16 31 137 16 0 82 1 0 5 25 26 224 0 1 145 chain 501074 chr5 181538259 + 42353189 42359659 L1PA6 6164 + 0 6160 3098 192 1 21 232 23 4 118 1 0 115 0 1 104 0 17 1150 1 0 371 0 2 16 5 6 467 1 0 308 0 1 64 2 3 440 0 1 64 5 0 383 324 0 420 1 1 638 0 1 17 5 0 672 0 4 321 3 0 6 chain 118987 chr5 181538259 + 42371700 42373203 L1PA8 5853 + 4141 5671 15706 103 2 6 466 0 7 225 0 4 6 7 14 32 5 7 72 10 16 97 9 10 351 6 5 46 2 0 18 1 0 45 chain 69347 chr5 181538259 + 42458218 42459384 L1PA15 4387 + 3259 4366 24151 193 5 6 34 0 1 72 1 0 60 23 9 77 0 1 19 0 4 68 11 9 78 2 0 43 4 3 39 0 2 26 0 1 4 1 0 33 22 0 63 2 1 15 27 26 39 1 0 27 73 58 44 3 1 11 8 3 28 1 0 9 chain 3997 chr5 181538259 + 42497655 42497703 MER58A 224 + 168 216 91474 48 chain 22555 chr5 181538259 + 42513505 42513793 AluSp 311 + 0 293 53036 70 9 14 209 chain 122066 chr5 181538259 + 42524069 42525634 THE1A-int 1579 + 0 1573 15183 171 8 7 127 0 6 22 3 5 62 3 0 218 1 2 550 8 9 136 11 5 52 0 8 193 chain 26773 chr5 181538259 + 42525640 42525994 THE1A 353 + 0 353 46577 110 1 0 92 1 0 48 15 16 87 chain 48184 chr5 181538259 + 42527130 42527845 L1PREC2 3366 + 136 858 30225 34 0 1 4 2 0 5 4 5 15 21 15 18 2 1 11 1 0 11 4 2 33 3 2 42 0 14 50 1 0 36 0 1 34 2 1 84 3 4 93 0 4 202 chain 27111 chr5 181538259 + 42563332 42563650 AluYb8 318 + 0 314 46111 63 2 0 69 2 0 182 chain 16099 chr5 181538259 + 42607023 42607269 THE1D 372 + 118 360 60895 38 2 0 46 23 22 117 1 0 19 chain 548435 chr5 181538259 + 42659631 42665756 L1PA3long 6157 + 12 6157 840 1156 0 3 289 0 4 1813 1 12 159 0 1 915 0 2 1096 3 0 235 0 1 125 0 1 333 chain 8667 chr5 181538259 + 42677661 42677825 MER30 238 + 47 234 73304 60 9 34 24 28 26 43 chain 61402 chr5 181538259 + 42680951 42681647 L1PA6 6164 + 4994 5694 26010 321 5 9 370 chain 86963 chr5 181538259 + 42686360 42687411 L1PA7 6471 + 3990 5050 20237 211 0 1 459 7 11 161 1 6 116 1 0 95 chain 555918 chr5 181538259 + 42734714 42740750 L1PA2 6032 + 0 6032 363 370 15 4 665 0 3 2329 0 4 443 0 1 364 1 0 1849 chain 123158 chr5 181538259 + 42742988 42744360 L1PA5 6144 + 4697 6077 14997 1035 0 8 337 chain 124906 chr5 181538259 + 42764335 42766107 L1MA1 4479 + 2464 4190 14724 54 6 0 133 0 3 14 1 0 103 2 0 32 2 1 62 1 0 9 2 3 80 1 0 27 2 0 173 2 0 99 1 0 6 5 0 56 1 2 68 3 0 130 7 5 55 5 6 130 1 0 24 2 0 16 1 0 23 0 2 46 1 0 8 8 6 19 1 0 88 1 0 5 3 0 126 1 0 29 2 0 35 1 0 8 10 6 16 7 0 18 chain 50033 chr5 181538259 + 42795707 42796251 L1PA3long 6157 + 5614 6157 29554 393 1 0 150 chain 53718 chr5 181538259 + 42815030 42815780 Harlequin-int 5206 + 135 887 28312 14 3 0 65 13 12 54 7 10 66 12 17 53 3 2 21 1 3 33 3 0 402 chain 8830 chr5 181538259 + 42836957 42837064 LTR12C 1709 + 930 1037 72916 107 chain 42561 chr5 181538259 + 42852789 42853371 PRIMA4_LTR 623 + 0 623 33026 134 5 6 117 7 8 57 0 19 43 6 0 24 0 4 30 1 2 50 0 23 14 2 0 92 chain 493443 chr5 181538259 + 42862962 42868954 L1PA6 6164 + 0 6162 3328 103 12 134 236 42 41 43 0 1 232 0 3 139 1 26 107 0 1 7 1 0 341 25 25 7 0 2 5 2 0 88 1 10 452 0 10 199 0 2 111 0 1 72 9 0 561 0 2 228 0 1 12 1 0 708 0 2 446 0 4 135 2 0 152 1 0 424 0 2 1087 chain 4166 chr5 181538259 + 42931193 42931666 MER11D 897 + 0 474 25804 357 0 1 116 chain 452777 chr5 181538259 + 42931680 42936910 L1PA4 6152 + 0 5186 4312 265 50 0 803 0 1 457 0 1 2409 9 13 1237 chain 3452 chr5 181538259 + 42937871 42938263 MER11D 897 + 474 891 25804 100 0 23 83 0 1 87 0 1 122 chain 43178 chr5 181538259 + 42978728 42979806 SVA_B 1603 + 53 1176 14701 579 1 2 199 23 24 33 0 1 41 0 1 14 14 54 4 0 1 170 chain 141990 chr5 181538259 + 42979816 42981389 SVA_D 2077 + 0 2076 12937 17 5 23 838 0 437 38 0 49 40 1 0 634 chain 16822 chr5 181538259 + 42981429 42981849 SVA_B 1603 + 1176 1602 14701 407 0 6 13 chain 26443 chr5 181538259 + 42981888 42982173 SVA_B 1603 + 1171 1456 47066 285 chain 12154 chr5 181538259 + 42982185 42982323 SVA_B 1603 + 1465 1603 66563 138 chain 6462 chr5 181538259 + 43025872 43025951 MER4-int 2692 + 775 854 79477 79 chain 43577 chr5 181538259 + 43049250 43049811 LTR61 567 + 0 567 32394 11 1 0 15 0 1 26 2 13 129 2 0 29 6 0 168 0 3 172 chain 472594 chr5 181538259 + 43053737 43060581 L1PA6 6164 + 599 6161 3797 378 0 1 93 1 2 361 0 6 5 1 0 283 2 1 20 0 2 108 0 5 141 0 8 28 0 1 283 0 2 61 9 0 307 2 0 495 0 1 12 2 1 1154 0 4 219 315 0 112 982 0 342 1 0 1109 1 0 17 chain 6952 chr5 181538259 + 43094213 43094300 LTR64 526 + 2 91 77765 14 0 1 30 0 1 43 chain 20709 chr5 181538259 + 43218872 43219195 THE1C 375 + 0 327 55485 76 14 15 16 7 8 6 0 1 161 17 18 26 chain 25787 chr5 181538259 + 43321435 43321718 L1PA4 6152 + 5868 6151 48034 283 chain 324960 chr5 181538259 + 43340769 43344928 L1PA2 6032 + 1 4500 6310 101 1 2 4 1 0 46 14 13 84 7 6 317 0 1 132 5 12 48 139 11 187 0 3 754 5 0 1408 4 8 333 0 459 50 0 1 519 chain 466542 chr5 181538259 + 43402548 43407994 L1PA5 6144 + 3 5488 3946 118 0 14 1241 1 2 259 0 1 580 2 0 95 3 5 208 0 3 181 0 9 73 0 1 1302 1 2 57 0 4 122 0 2 409 1 0 530 2 1 71 1 5 74 0 1 115 chain 93083 chr5 181538259 + 43414605 43415684 MER11C 1089 + 0 1079 19170 35 4 0 190 0 5 333 6 5 511 chain 36576 chr5 181538259 + 43451260 43451766 L1PB4 2604 + 1738 2255 37025 80 25 33 106 18 20 75 0 1 202 chain 4329 chr5 181538259 + 43457151 43457331 L1MC2 1988 + 1811 1978 89294 30 4 1 5 1 0 16 97 88 27 chain 196513 chr5 181538259 + 43462827 43465043 L1PA4 6152 + 3026 5227 9826 752 21 6 1443 chain 145443 chr5 181538259 + 43467171 43472134 L1MA1 4479 + 986 4190 12662 260 10 4 9 0 6 32 3 10 217 1000 0 101 0 1 19 0 10 256 5 7 36 1 4 32 0 4 90 1722 0 100 11 988 6 4 0 73 1 0 12 5 0 126 3 0 124 5 0 202 22 20 4 1 0 16 1 0 71 1 0 18 3 1 14 1 0 30 4 5 53 9 5 89 0 3 25 113 99 4 1 0 18 chain 12953 chr5 181538259 + 43468533 43468702 MER4A1 472 + 301 472 65175 92 10 12 67 chain 2410 chr5 181538259 + 43469247 43469297 L1MA1 4479 + 2091 2141 104116 20 7 8 8 1 0 14 chain 6101 chr5 181538259 + 43470876 43470964 L1MA1 4479 + 1994 2082 80720 66 0 4 7 0 1 2 5 0 8 chain 158138 chr5 181538259 + 43473234 43475534 L1PA7 6471 + 4428 6467 11865 9 0 9 343 4 0 196 12 8 384 0 5 28 10 11 127 1 0 43 3 8 21 2 1 62 309 27 44 0 11 289 1 6 144 0 3 67 13 0 13 17 24 148 2 0 8 chain 108450 chr5 181538259 + 43510449 43512039 SVA_A 1864 + 6 1864 17258 7 1 0 34 5 0 46 0 11 69 6 4 436 0 150 38 3 0 67 3 0 17 1 0 22 43 0 41 24 169 11 3 0 11 119 123 56 3 0 27 4 20 478 0 6 15 chain 10826 chr5 181538259 + 43515919 43516072 Tigger1 2417 + 111 264 68815 35 4 6 62 2 0 50 chain 140897 chr5 181538259 + 43521518 43523079 SVA_D 2077 + 52 2073 13033 490 0 40 321 0 185 88 0 225 328 0 10 334 chain 26625 chr5 181538259 + 43549300 43549644 THE1A 353 + 0 341 46795 84 2 1 17 1 0 100 1 0 139 chain 26660 chr5 181538259 + 43565848 43566220 THE1C 375 + 0 375 46744 129 6 10 41 0 1 6 1 0 147 2 1 4 0 1 9 1 0 26 chain 75719 chr5 181538259 + 43580447 43581389 LTR5_Hs 974 + 0 974 22653 279 0 28 512 8 15 19 20 17 104 chain 4814 chr5 181538259 + 43582444 43582502 LTR49 580 + 514 572 86627 58 chain 30599 chr5 181538259 + 43598788 43599214 MER57A1 433 + 0 433 41467 86 6 10 17 5 4 163 3 4 137 0 3 9 chain 19867 chr5 181538259 + 43655343 43655664 Tigger4b 360 + 0 360 56587 13 3 11 5 1 0 72 15 38 59 3 12 85 0 1 7 5 4 53 chain 46506 chr5 181538259 + 43706607 43707130 L1PA5 6144 + 5620 6144 30840 152 0 1 371 chain 547798 chr5 181538259 + 43717953 43723974 L1PA2 6032 + 2 6029 875 2045 0 1 1032 3 1 57 0 4 39 0 1 252 0 1 1523 0 1 1070 chain 452169 chr5 181538259 + 43791638 43796967 L1PA4 6152 + 1 5343 4331 124 3 17 14 24 10 696 7 6 460 5 7 572 0 1 100 1 2 207 0 8 619 1 0 149 0 1 37 0 1 175 1 0 308 0 1 966 0 1 860 chain 254353 chr5 181538259 + 43908706 43915517 L1P2 5180 + 2 3292 8124 148 2 1 97 12 11 230 27 26 48 1 0 84 7 11 125 0 15 20 17 0 579 0 4 298 0 1 141 3533 0 283 1 3 240 3 4 21 0 4 106 0 1 765 0 1 23 chain 59944 chr5 181538259 + 43928051 43928860 L1PA8 5853 + 5031 5842 26389 62 14 15 96 10 1 359 1 0 44 2 0 6 0 4 60 2 1 15 6 18 28 2 1 19 1 0 82 chain 24166 chr5 181538259 + 43950885 43951231 THE1C 375 + 0 345 50549 176 34 33 136 chain 443629 chr5 181538259 + 43952907 43958071 L1PA4 6152 + 21 5187 4503 758 1 4 660 3 1 975 1 2 844 0 2 673 0 1 370 3 0 876 chain 57705 chr5 181538259 + 43969714 43970357 L1PA4 6152 + 4434 5077 27049 643 chain 527397 chr5 181538259 + 44013805 44019878 L1PA4 6152 + 0 6146 1937 126 3 17 69 7 8 512 1 0 330 0 2 1059 1 57 239 1 2 505 0 1 269 9 7 1251 0 3 609 1 2 214 2 0 102 1 0 762 chain 19683 chr5 181538259 + 44032956 44033321 L1M1 2793 + 744 1098 56805 18 4 2 4 1 0 4 2 0 23 22 21 13 6 4 6 1 0 54 14 12 98 1 0 37 2 3 55 chain 339671 chr5 181538259 + 44040911 44044771 L1PA3long 6157 + 6 5830 6078 1231 20 1 1967 0 1982 143 0 1 499 chain 64811 chr5 181538259 + 44111087 44111868 LTR17 781 + 0 781 25236 119 0 9 171 10 0 28 0 1 453 chain 62783 chr5 181538259 + 44114296 44115077 LTR17 781 + 0 781 25688 121 0 9 169 10 0 28 0 1 373 0 1 4 14 13 62 chain 207559 chr5 181538259 + 44124399 44127480 L1PB1 5432 + 2388 5427 9440 108 11 0 60 11 12 65 0 1 205 19 17 30 0 3 41 25 30 268 10 9 492 2 4 162 1 2 236 0 3 256 0 11 186 1 0 19 17 18 178 1 0 198 1 0 12 3 4 11 11 10 59 41 16 24 35 30 52 2 1 15 1 0 43 1 0 13 29 19 15 3 1 5 1 0 14 9 7 17 1 0 21 1 0 13 1 0 18 2 0 5 chain 49562 chr5 181538259 + 44138228 44138784 L1PA3long 6157 + 5599 6156 29747 415 0 1 141 chain 120831 chr5 181538259 + 44152291 44154455 L1HS 6032 + 3882 6032 15372 603 16 0 1441 0 2 104 chain 17350 chr5 181538259 + 44157729 44157965 MER61-int 3695 + 3025 3262 59415 127 8 9 4 1 0 4 0 1 92 chain 20001 chr5 181538259 + 44213321 44213608 THE1D 372 + 79 372 56384 25 0 1 23 0 4 52 4 0 6 12 18 16 1 0 148 chain 76935 chr5 181538259 + 44221879 44222969 L1PA8 5853 + 4758 5800 22336 251 6 0 75 5 3 14 0 1 68 7 9 48 4 1 86 0 3 74 6 5 125 1 0 41 1 0 18 0 1 27 2 0 67 9 8 57 2 1 22 1 0 25 36 0 12 chain 43790 chr5 181538259 + 44236339 44236852 LTR7 482 + 0 482 32265 278 32 1 203 chain 4678 chr5 181538259 + 44283450 44283524 L1MA4 2864 + 2724 2790 87387 13 6 0 30 2 0 23 chain 29400 chr5 181538259 + 44286647 44286969 L1HS 6032 + 1600 1922 42735 322 chain 126970 chr5 181538259 + 44320985 44322998 Charlie3 2679 + 905 2679 14420 27 5 1 328 0 3 172 27 26 220 301 0 88 0 3 140 11 14 168 0 9 11 1 2 105 1 0 8 0 1 166 0 51 107 3 0 124 chain 2498 chr5 181538259 + 44325046 44325094 L1PA4 6152 + 5311 5345 103662 7 14 0 27 chain 68604 chr5 181538259 + 44325094 44325872 L1PA4 6152 + 5350 6142 24310 615 0 1 13 7 19 40 0 1 103 chain 24642 chr5 181538259 + 44396742 44397096 THE1B 368 + 0 368 49810 44 6 24 94 20 19 16 2 0 97 1 0 74 chain 5672 chr5 181538259 + 44459136 44459240 MER39 703 + 545 652 82460 59 22 25 23 chain 36423 chr5 181538259 + 44478013 44478472 MER4A1 472 + 0 458 37124 235 7 6 217 chain 57494 chr5 181538259 + 44483130 44483861 LTR17 781 + 0 766 27106 31 0 1 100 0 14 15 3 2 164 1 0 401 0 22 16 chain 43070 chr5 181538259 + 44524580 44525062 L1PA3long 6157 + 4271 4752 32734 85 1 0 396 chain 46592 chr5 181538259 + 44530790 44531438 LTR12_ 688 + 0 688 30815 130 2 51 156 0 2 103 47 17 55 0 18 41 0 1 114 chain 30819 chr5 181538259 + 44552502 44552896 MLT2A1 477 + 0 395 41301 140 0 1 27 1 5 212 4 0 10 chain 66225 chr5 181538259 + 44577924 44578706 L1PA4 6152 + 3515 4282 24905 169 2 0 94 21 6 156 0 1 329 0 1 11 chain 535882 chr5 181538259 + 44578944 44584947 L1PA3long 6157 + 0 6152 1573 152 0 1 420 0 1 202 0 128 99 0 3 165 7 22 1739 0 1 1135 0 1 2049 1 0 34 chain 41862 chr5 181538259 + 44618526 44618989 L1PA3long 6157 + 5066 5526 33452 253 3 0 207 chain 56281 chr5 181538259 + 44618989 44619624 L1PA3long 6157 + 5527 6157 27490 617 3 0 8 2 0 5 chain 228655 chr5 181538259 + 44623654 44626252 L1PA5 6144 + 3532 6142 8784 145 2 0 998 0 11 611 0 4 590 0 3 241 4 0 7 chain 3544 chr5 181538259 + 44663091 44663130 L1PA3long 6157 - 462 501 94922 39 chain 536590 chr5 181538259 + 44668502 44674525 L1PA3long 6157 + 0 6156 1527 152 0 1 328 0 1 294 0 128 542 1 0 1158 0 1 686 0 1 145 1 0 498 0 1 661 0 2 1557 chain 33140 chr5 181538259 + 44732466 44732887 L1PA8 5853 + 4419 4841 39410 89 6 1 7 0 5 166 1 2 152 chain 431324 chr5 181538259 + 44755904 44760793 L1PA4 6152 + 1010 5879 4735 23 0 1 327 47 20 276 0 1 215 0 1 248 0 2 7 2 0 1424 0 6 123 2 0 2195 chain 42460 chr5 181538259 + 44788577 44789089 MER9a2 513 + 0 513 33086 416 0 1 96 chain 253362 chr5 181538259 + 44789877 44793017 HERVK9-int 4720 + 36 4720 8149 13 13 9 52 0 1 13 1 0 8 1 0 30 1 0 880 1 0 454 0 924 214 0 1 16 67 695 25 1 0 78 2 1 1270 chain 42081 chr5 181538259 + 44793017 44793529 MER9a2 513 + 0 513 33304 22 1 0 307 0 1 118 0 1 64 chain 5986 chr5 181538259 + 44794682 44794749 MER4A1 472 + 405 472 81142 67 chain 25500 chr5 181538259 + 44838151 44838511 THE1D 372 + 0 372 48482 160 36 48 164 chain 80409 chr5 181538259 + 44857129 44858042 L1PA4 6152 + 5232 6152 21542 907 0 7 6 chain 25992 chr5 181538259 + 44896896 44897246 THE1B 368 + 3 368 47725 41 0 15 13 1 5 92 1 0 29 3 1 93 0 1 7 2 0 68 chain 8107 chr5 181538259 + 44940078 44940173 MLT2A2 560 + 465 560 74624 95 chain 50074 chr5 181538259 + 44959019 44959644 LTR12 884 + 0 884 29535 61 0 41 172 0 113 37 0 2 125 0 103 230 chain 41469 chr5 181538259 + 44985919 44986425 MER9a2 513 + 0 509 33695 154 11 11 197 0 1 91 0 2 53 chain 182839 chr5 181538259 + 44987423 44989819 HERVK9-int 4720 + 58 4720 10444 66 1 0 7 2 1 24 26 25 92 1 2 170 16 10 114 7 11 462 4 3 310 7 6 100 0 3 32 0 924 231 51 689 40 0 20 494 0 687 139 chain 42456 chr5 181538259 + 44989819 44990332 MER9a2 513 + 0 513 33090 513 chain 33967 chr5 181538259 + 45007153 45007672 LTR12_ 688 + 1 561 38730 89 15 31 145 22 21 62 25 50 87 7 8 67 chain 66966 chr5 181538259 + 45047976 45048751 L1PA4 6152 + 4572 5348 24712 57 1 2 717 chain 85389 chr5 181538259 + 45103598 45104667 THE1A-int 1579 + 503 1579 20549 308 0 1 247 0 1 55 0 4 94 1 2 364 chain 20729 chr5 181538259 + 45104682 45105022 THE1A 353 + 13 353 55458 34 7 8 34 6 5 12 34 33 174 1 2 38 chain 32734 chr5 181538259 + 45115004 45115476 MLT2A1 477 + 0 472 39729 168 5 2 9 0 1 23 0 1 187 10 0 12 3 1 15 11 24 29 chain 351203 chr5 181538259 + 45117916 45122030 L1PA5 6144 + 2037 6144 5899 157 0 2 117 2 1 882 1 0 88 0 1 122 3 0 22 6 5 967 3 0 625 0 1 260 1 0 742 1 0 115 chain 90665 chr5 181538259 + 45151498 45152580 MER11B 1079 + 9 1079 19558 255 3 0 94 0 5 406 14 0 218 0 1 76 5 4 11 chain 69093 chr5 181538259 + 45207692 45208543 Harlequin-int 5206 + 494 2128 24197 37 1 0 355 0 778 295 0 6 163 chain 39246 chr5 181538259 + 45254184 45254809 LTR12F 595 + 0 595 35180 103 0 1 37 45 7 29 50 38 111 0 1 65 2 0 36 0 1 16 10 28 6 3 0 38 0 4 74 chain 25781 chr5 181538259 + 45302664 45302990 THE1A 353 + 2 329 48050 64 0 1 42 2 1 191 0 1 27 chain 532233 chr5 181538259 + 45312387 45318570 L1PA5 6144 + 0 6144 1740 1027 1 0 614 0 5 63 1 0 132 0 1 364 53 0 49 0 2 944 0 1 327 7 6 140 0 2 945 2 0 357 10 13 820 0 1 181 0 1 128 0 3 18 chain 548826 chr5 181538259 + 45346381 45352534 L1PA3long 6157 + 6 6157 819 783 1 0 5 0 1 254 0 2 778 1 0 439 5 0 58 1 0 3323 0 1 173 0 1 185 0 1 147 chain 195248 chr5 181538259 + 45444900 45447243 L1P1 4361 + 1 2338 9875 38 1 0 535 10 9 118 7 0 726 4 5 744 0 2 160 chain 9793 chr5 181538259 + 45476748 45476902 Tigger4b 360 + 29 208 70844 67 18 43 69 chain 196749 chr5 181538259 + 45548437 45550645 L1PA4 6152 + 3931 6141 9820 113 1 0 1596 0 1 212 1 2 183 0 1 102 chain 59855 chr5 181538259 + 45587032 45587709 L1PA5 6144 + 5467 6144 26411 677 chain 214391 chr5 181538259 + 45596985 45599545 L1PA6 6164 + 3571 6159 9192 141 2 0 621 0 1 34 0 4 277 1 0 399 1 0 266 1 5 361 0 5 325 0 1 71 1 20 52 2 0 5 chain 4286 chr5 181538259 + 45601805 45601853 MLT1B 390 + 2 50 89595 48 chain 75145 chr5 181538259 + 45657604 45658440 L1PA3long 6157 + 4359 5198 22789 401 1 0 36 0 4 398 chain 555781 chr5 181538259 + 45658440 45664470 L1PA2 6032 + 0 6028 369 1607 0 1 4273 0 1 139 4 0 7 chain 47699 chr5 181538259 + 45664481 45665004 L1PA3long 6157 + 5179 5702 30400 523 chain 41404 chr5 181538259 + 45665005 45665458 L1PA3long 6157 + 5704 6157 33732 453 chain 13508 chr5 181538259 + 45699995 45700203 L1PA8 5853 + 5648 5853 64304 29 1 0 10 12 11 42 2 1 19 2 1 50 0 1 41 chain 22594 chr5 181538259 + 45710642 45710937 L1PA8A 6298 + 5994 6289 52995 184 7 0 7 4 11 93 chain 528036 chr5 181538259 + 45786144 45792292 L1PA4 6152 + 0 6151 1911 74 0 1 633 1 2 533 0 1 159 0 5 10 5 0 1159 0 1 199 0 1 178 7 6 220 0 1 25 0 1 1330 1 0 804 0 2 51 0 1 287 5 0 467 chain 6422 chr5 181538259 + 45808747 45808854 MADE1 96 + 0 90 79597 31 15 0 12 3 1 46 chain 35761 chr5 181538259 + 45818352 45818766 L1PA5 6144 + 5730 6144 37559 414 chain 27834 chr5 181538259 + 45819551 45819947 L1PA8 5853 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L1PA3long 6157 + 5573 6147 29822 439 0 7 128 chain 45022 chr5 181538259 + 45977975 45978452 L1HS 6032 + 5038 5515 31569 477 chain 75675 chr5 181538259 + 46031764 46032599 L1PA2 6032 + 3952 4787 22667 835 chain 9567 chr5 181538259 + 46046633 46046738 L1PA4 6152 + 5402 5507 71336 105 chain 52007 chr5 181538259 + 46046748 46047357 L1PA4 6152 + 5527 6135 28875 291 1 0 317 chain 35284 chr5 181538259 + 46129450 46129870 L1P1 4361 + 3906 4327 37836 23 2 5 217 1 0 154 1 0 22 chain 482766 chr5 181538259 + 46130900 46136997 L1PA4 6152 + 0 6143 3577 43 7 8 655 12 13 231 10 14 134 16 21 110 7 8 425 0 1 14 0 1 59 0 17 562 1 2 60 0 1 74 2 0 607 1 0 119 1 2 105 0 1 229 1 0 166 0 1 53 5 4 276 8 7 265 0 1 225 0 1 120 1 0 637 6 10 19 1 0 52 0 1 458 0 2 203 0 9 117 chain 29299 chr5 181538259 + 46164007 46164333 AluYb9 318 + 0 318 42898 126 7 0 74 1 0 118 chain 84080 chr5 181538259 + 46171160 46172174 L1PA5 6144 + 4741 5767 20785 127 0 1 34 4 1 313 1 0 4 0 1 117 0 14 414 chain 515182 chr5 181538259 + 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99244 32 chain 46770 chr5 181538259 + 46424268 46424777 L1PA2 6032 + 5520 6029 30741 509 chain 8355 chr5 181538259 + 46624101 46624190 AluSc 308 + 57 146 74015 89 chain 95175 chr5 181538259 + 47103745 47104825 L1PA2 6032 + 4947 6026 18882 743 1 0 336 chain 481293 chr5 181538259 + 50145794 50151880 L1PA3long 6157 + 345 6155 3602 233 0 1 103 2 1 1158 298 0 61 0 1 422 0 1 185 0 1 125 1 2 50 0 1 4 2 1 1240 0 1 580 32 45 835 2 0 24 0 5 312 4 3 4 0 1 12 0 1 397 chain 416839 chr5 181538259 + 50156151 50161079 L1HS 6032 + 2 4964 4924 248 7 6 241 6 30 51 0 1 263 8 9 337 0 1 277 0 1 916 0 1 63 0 1 1230 1 3 437 0 1 79 1 2 37 1 2 5 1 0 260 0 1 459 chain 5518 chr5 181538259 + 50223239 50223299 L1PA3long 6157 + 5107 5167 83167 60 chain 241750 chr5 181538259 + 50230107 50233162 L1P1 4361 + 1 3052 8433 148 1 2 423 10 9 119 12 5 93 3 0 6 21 24 405 15 16 467 0 1 1037 0 1 295 chain 33679 chr5 181538259 + 50268365 50268744 L1PA2 6032 + 5648 6029 38946 226 0 1 11 0 1 142 chain 272678 chr5 181538259 + 50269675 50272861 L1PA4 6152 + 2954 6143 7638 210 4 1 258 0 1 386 0 1 128 5 6 946 0 1 221 0 1 894 0 1 134 chain 519668 chr5 181538259 + 50280227 50286251 L1PA3long 6157 + 4 6156 2289 149 0 1 98 0 4 516 4 132 77 0 1 180 0 3 370 0 1 788 1 2 11 0 1 1177 0 2 220 0 1 452 0 1 197 0 1 376 22 0 523 0 4 722 1 2 140 chain 228914 chr5 181538259 + 50295625 50298188 L1PA3long 6157 + 3043 5608 8780 951 0 1 1260 0 1 352 chain 37631 chr5 181538259 + 50298190 50298623 L1PA3long 6157 + 5724 6157 36320 433 chain 28244 chr5 181538259 + 50298641 50299014 LTR12C 1709 + 1228 1702 44495 168 0 102 115 22 21 68 chain 181622 chr5 181538259 + 50309133 50311243 L1HS 6032 + 1808 3921 10519 16 0 1 329 1 0 5 0 1 237 0 1 582 1 0 5 0 1 146 0 1 788 chain 4020 chr5 181538259 + 50317324 50317460 L1PA15 4387 + 4222 4353 91307 40 75 70 21 chain 434823 chr5 181538259 + 50330069 50335277 L1PA4 6152 + 0 5193 4669 248 0 1 211 6 0 120 1 0 256 17 0 168 0 1 139 4 5 83 0 2 95 0 3 5 8 5 98 1 0 524 0 1 362 0 1 52 0 1 392 4 3 388 0 2 137 0 1 214 0 1 1116 1 0 558 chain 20346 chr5 181538259 + 50342096 50342456 THE1B 368 + 0 368 55952 106 17 18 45 1 0 6 39 40 13 13 21 57 2 0 5 0 1 56 chain 27690 chr5 181538259 + 50358072 50358447 THE1C 375 + 0 375 45330 127 17 18 205 1 0 25 chain 395198 chr5 181538259 + 50366783 50380332 L1PA4 6152 + 1 4836 5233 172 12 27 674 1 2 418 0 1 127 0 5 1067 8740 5 659 8 7 470 0 1 781 1 0 201 0 1 16 1 0 201 chain 124796 chr5 181538259 + 50369256 50370754 LTR12C 1709 + 0 1709 14736 502 12 13 184 0 159 213 0 47 106 0 4 481 chain 113005 chr5 181538259 + 50376650 50377983 LTR12C 1709 + 0 1705 16674 300 1 2 56 0 1 393 0 366 106 0 4 477 chain 483963 chr5 181538259 + 50386943 50393119 L1PA7 6471 + 198 6467 3554 42 5 15 89 1 0 229 6 1 85 0 1 83 1 0 11 1 18 25 1 0 498 0 10 27 8 23 71 4 5 68 0 3 248 9 5 7 0 9 265 11 12 123 0 1 152 8 9 129 0 4 53 0 2 114 0 11 18 1 2 18 4 0 301 0 1 490 0 4 23 4 1 504 0 1 91 0 6 225 0 1 149 0 1 412 6 7 36 0 1 212 9 8 464 0 2 71 9 8 156 0 1 14 1 9 344 1 0 80 58 59 101 chain 60985 chr5 181538259 + 50421374 50422051 L1PA4 6152 + 5470 6152 26111 671 0 5 6 chain 4304 chr5 181538259 + 50464023 50464076 MLT1H1 527 + 447 500 89477 53 chain 128522 chr5 181538259 + 50464832 50466380 LTR12C 1709 + 0 1709 14217 426 10 11 262 0 159 251 0 1 6 5 1 107 0 4 481 chain 118095 chr5 181538259 + 50474284 50475962 THE1B-int 1605 + 3 1605 15872 46 1 0 75 54 0 306 36 21 47 34 23 172 10 11 162 0 1 80 12 13 63 0 2 290 1 0 5 1 2 283 chain 341123 chr5 181538259 + 50494878 50498939 L1P1 4361 + 1 4341 6048 306 0 270 234 11 6 107 0 2 18 0 4 420 0 1 148 0 1 235 0 1 85 0 1 1321 1 0 4 0 1 247 0 1 262 0 1 191 6 7 56 0 3 75 0 1 141 1 0 154 1 0 23 2 1 12 chain 64532 chr5 181538259 + 50500000 50500720 L1PA4 6152 + 5419 6141 25304 60 0 1 503 0 1 157 chain 276916 chr5 181538259 + 50531827 50534976 L1PA4 6152 + 2984 6136 7524 225 2 0 77 1 0 644 1 0 8 0 1 873 0 7 152 2 1 714 1 0 392 0 1 57 chain 529385 chr5 181538259 + 50541062 50547222 L1PA4 6152 + 2 6146 1863 305 1 2 125 3 0 6 5 8 103 15 0 313 0 8 165 1 0 551 8 0 139 0 1 591 6 7 658 0 1 788 1 0 1568 5 2 803 chain 27974 chr5 181538259 + 50573252 50573542 AluYa8 305 + 0 290 44911 290 chain 130288 chr5 181538259 + 50607484 50609138 SVA_A 1864 + 19 1864 14003 472 0 3 19 1 194 16 3 0 35 9 11 28 8 6 50 1 4 30 14 13 87 2 0 29 11 8 62 0 1 56 1 0 53 0 1 667 chain 15613 chr5 181538259 + 50632829 50633084 L1MC2 1988 + 1404 1664 61514 93 16 17 19 21 23 42 0 2 64 chain 3630 chr5 181538259 + 50679088 50679127 MER41B 635 + 508 547 94187 39 chain 12180 chr5 181538259 + 50910266 50910496 MER1B 344 + 100 344 66511 79 45 52 30 0 1 4 14 20 58 chain 185903 chr5 181538259 + 50940356 50943186 L1PB2 3958 + 463 2962 10301 37 1 0 42 0 13 115 0 2 24 0 5 474 1 4 95 0 1 8 0 1 15 0 4 272 2 0 5 1 3 13 6 7 259 0 13 12 5 6 192 375 0 117 0 1 277 1 2 442 1 0 38 chain 17244 chr5 181538259 + 50954599 50955267 MER4E 760 + 389 732 59534 12 19 17 12 10 14 40 392 65 183 chain 3300 chr5 181538259 + 51061472 51061551 MADE1 96 + 0 96 97011 46 3 20 30 chain 22951 chr5 181538259 + 51100703 51101110 LTR21B 408 + 0 389 52443 60 1 0 4 20 16 17 2 0 143 1 0 4 35 11 51 14 29 11 3 1 37 0 1 4 chain 22606 chr5 181538259 + 51116895 51117167 AluY 311 + 40 302 52977 86 1 0 131 9 0 45 chain 23428 chr5 181538259 + 51129365 51129742 THE1D 372 + 0 372 51709 15 0 2 32 9 0 24 4 5 74 39 41 32 1 0 147 chain 87952 chr5 181538259 + 51140386 51141404 L1PA5 6144 + 3479 4500 20057 638 3 0 109 1 0 4 0 1 48 0 2 63 0 4 152 chain 25394 chr5 181538259 + 51144468 51144735 AluYa5 310 + 34 301 48633 267 chain 3710 chr5 181538259 + 51160193 51160267 MER52D 1964 + 1108 1182 93540 39 14 15 8 1 0 12 chain 24220 chr5 181538259 + 51161267 51161791 L1PA13 3608 + 112 589 50460 18 11 3 6 0 6 17 1 0 15 8 7 17 28 17 41 15 14 15 1 0 3 1 0 33 1 2 88 1 0 14 1 0 17 2 0 17 6 2 17 1 0 17 2 0 18 2 0 16 1 0 15 0 1 20 18 1 20 chain 22451 chr5 181538259 + 51203049 51203413 THE1D 372 + 8 372 53198 152 0 1 8 3 58 11 57 1 133 chain 19247 chr5 181538259 + 51219521 51219745 L1PA7 6471 + 6245 6466 57297 212 3 0 9 chain 36164 chr5 181538259 + 51224982 51225423 L1PA7 6471 + 6027 6467 37301 26 1 0 414 chain 549025 chr5 181538259 + 51250746 51256770 L1PA2 6032 + 3 6032 805 802 1 5 4633 0 1 588 chain 550867 chr5 181538259 + 51304496 51310641 L1PA3long 6157 + 4 6156 689 709 1 2 533 0 1 828 0 3 3034 0 1 460 0 1 580 chain 535592 chr5 181538259 + 51348667 51354813 L1PA4 6152 + 2 6143 1587 128 15 1 11 8 22 317 11 5 1274 1 0 1355 0 1 57 0 1 2969 chain 12636 chr5 181538259 + 51402931 51403075 LTR12F 595 + 336 480 65744 144 chain 16118 chr5 181538259 + 51482245 51482479 L1PA8 5853 + 5623 5853 60875 59 1 0 6 6 5 47 2 1 19 2 1 92 chain 78324 chr5 181538259 + 51512970 51513871 L1PA5 6144 + 5238 6140 22024 229 0 1 259 1 0 231 0 1 181 chain 2884 chr5 181538259 + 51556215 51556249 MADE1 96 - 1 35 100965 34 chain 118747 chr5 181538259 + 51629283 51631063 L1PA8 5853 + 4400 5853 15764 684 0 2 97 309 0 26 8 0 152 4 0 201 1 0 46 2 0 74 16 14 31 1 0 17 1 0 16 1 0 93 chain 523767 chr5 181538259 + 51636777 51642771 L1PA4 6152 + 6 6151 2102 122 0 14 431 0 3 2187 2 1 407 1 0 12 1 0 69 0 1 18 6 10 162 0 118 229 8 21 2085 1 2 253 chain 7207 chr5 181538259 + 51701050 51701280 L1P3 4156 + 2905 3145 27992 60 0 2 105 5 13 60 chain 79283 chr5 181538259 + 51701289 51702224 L1PA5 6144 + 5194 6130 21785 770 8 9 157 chain 16608 chr5 181538259 + 51702264 51702794 L1P3 4156 + 3145 3678 27992 196 10 11 94 0 4 44 0 1 36 4 1 77 1 0 24 0 1 44 chain 5183 chr5 181538259 + 51910693 51910752 L1MB3 1562 + 1247 1306 84757 59 chain 9221 chr5 181538259 + 51925487 51925600 MER57A1 433 + 0 113 72075 113 chain 141187 chr5 181538259 + 51927021 51929501 MER57-int 2662 + 40 2659 13011 30 354 505 244 2 0 160 7 5 112 8 4 39 0 1 46 1 0 19 9 10 19 8 6 56 0 17 53 0 2 31 1 0 133 1 8 124 1 0 233 15 17 58 0 4 104 0 3 85 33 35 106 26 23 92 18 12 71 32 18 12 9 7 5 1 0 9 4 1 24 1 0 9 5 0 33 3 0 34 chain 523314 chr5 181538259 + 51951743 51957834 L1PA4 6152 + 0 6141 2128 245 1 0 698 0 1 2227 3 2 30 5 0 9 34 0 3 11 0 31 3 0 688 0 1 112 1 2 283 0 1 17 0 6 1000 0 1 441 6 100 243 chain 3868 chr5 181538259 + 51987131 51987174 MER5B 177 - 127 170 92365 43 chain 73557 chr5 181538259 + 52018968 52019772 L1PA3long 6157 + 5353 6157 23204 649 1 0 67 0 1 87 chain 386141 chr5 181538259 + 52088227 52092569 L1PA2 6032 + 1712 6029 5383 1235 0 1 113 1 0 1452 1 0 136 22 0 452 1 0 4 0 1 915 2 0 8 chain 11313 chr5 181538259 + 52124236 52124361 L1PA2 6032 + 5905 6030 68064 125 chain 450278 chr5 181538259 + 52156970 52162844 L1PA8 5853 + 51 5846 4386 21 2 0 10 1 0 6 0 1 4 56 16 191 5 9 86 3 10 176 10 11 65 10 11 15 60 0 23 0 3 400 10 15 36 1 0 80 0 1 286 0 2 18 1 5 143 1 0 42 2 1 286 6 8 37 0 4 6 0 1 4 15 3 801 3 4 63 0 1 522 1 0 76 4 5 606 0 3 451 0 5 185 1 0 49 0 1 4 11 10 136 2 0 73 1 3 84 8 3 96 0 1 198 0 1 94 1 0 25 5 7 14 10 8 11 0 1 34 0 1 18 1 0 8 1 0 55 1 0 16 1 0 86 chain 75848 chr5 181538259 + 52182500 52183457 L1PA7 6471 + 5509 6465 22628 90 0 4 21 10 6 212 3 4 266 0 1 151 8 0 9 12 20 45 3 0 127 chain 17705 chr5 181538259 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11 56 chain 55159 chr5 181538259 + 52397271 52397961 LTR12_ 688 + 0 671 27822 41 0 6 83 25 0 8 0 1 340 1 0 192 chain 40921 chr5 181538259 + 52403289 52403848 LTR12_ 688 + 0 555 34016 146 0 24 48 0 1 209 60 31 96 chain 5995 chr5 181538259 + 52434180 52434553 MLT1B 390 + 3 374 81096 27 8 7 13 5 15 20 230 219 31 1 0 4 6 7 28 chain 24070 chr5 181538259 + 52470302 52470594 L1PA7 6471 + 6162 6459 50699 144 10 15 138 chain 12872 chr5 181538259 + 52488414 52488559 MER11B 1079 + 0 145 65303 145 chain 27384 chr5 181538259 + 52518759 52519110 THE1A 353 + 0 353 45728 111 1 0 85 0 2 76 0 1 78 chain 479301 chr5 181538259 + 52533859 52539378 L1PA4 6152 + 620 6152 3653 621 1 2 797 0 1 122 0 1 309 0 1 524 0 1 166 2 0 112 5 6 592 5 6 286 0 1 1267 0 1 700 0 6 10 chain 9389 chr5 181538259 + 52539817 52540010 L1PB1 5432 + 5236 5415 71725 15 1 0 31 1 0 19 11 7 18 9 6 14 2 0 24 1 0 22 1 0 11 2 1 11 chain 155853 chr5 181538259 + 52612744 52614481 L1PA3long 6157 + 4420 6157 12014 1737 chain 24529 chr5 181538259 + 52616824 52617216 L1PA8 5853 + 5461 5853 49978 102 10 9 38 2 0 8 4 8 56 1 0 3 7 0 7 8 15 33 2 3 17 1 0 93 chain 42335 chr5 181538259 + 52636389 52636917 L1PA7 6471 + 5511 6033 33168 21 1 2 87 1 0 82 1 0 204 5 0 126 chain 168440 chr5 181538259 + 52641835 52643757 L1P1 4361 + 480 2450 11193 113 0 1 890 0 1 456 0 1 7 0 45 319 0 1 24 1 0 112 chain 21457 chr5 181538259 + 52643900 52644264 THE1D 372 + 0 372 54572 21 6 7 36 1 0 102 40 42 16 1 0 71 0 4 36 9 12 25 chain 158678 chr5 181538259 + 52697201 52698944 L1PA3long 6157 + 4332 6157 11833 459 0 1 911 0 81 373 chain 78575 chr5 181538259 + 52712931 52713880 L1PA6 6164 + 5216 6159 21957 420 15 6 51 0 1 105 0 1 26 0 1 332 chain 475472 chr5 181538259 + 52718498 52723918 L1PA4 6152 + 739 6149 3739 300 0 1 1181 0 1 98 1 0 475 1 0 160 1 0 36 0 2 6 1 0 1352 0 4 310 1 0 534 0 4 13 21 1 123 0 2 312 0 1 162 0 1 80 1 0 251 chain 4094 chr5 181538259 + 52724513 52724630 MER105 203 + 36 151 90824 43 54 52 20 chain 18121 chr5 181538259 + 52762867 52763075 L1PA5 6144 + 5931 6139 58543 208 chain 3990 chr5 181538259 + 52791693 52791743 HY3 101 + 28 78 91516 50 chain 33596 chr5 181538259 + 52820155 52820524 L1PA4 6152 + 5773 6143 39001 221 0 1 148 chain 7884 chr5 181538259 + 53054736 53054928 L1PB1 5432 + 5256 5427 75170 25 1 0 15 4 0 6 16 6 19 7 4 15 2 0 13 0 4 7 1 0 22 7 6 6 1 0 18 2 0 5 chain 8545 chr5 181538259 + 53080207 53080333 MER85 139 + 0 137 73574 89 10 21 27 chain 543320 chr5 181538259 + 53141072 53147199 L1PA3long 6157 + 4 6147 1118 436 0 1 1018 5 4 1628 0 1 79 1 0 814 0 1 802 1 0 4 0 1 441 1 10 114 0 5 163 0 1 620 chain 18817 chr5 181538259 + 53151068 53151416 THE1B 368 + 0 360 57757 64 3 8 29 21 22 53 60 67 60 1 0 57 chain 7417 chr5 181538259 + 53178105 53178271 Tigger3c 601 + 332 470 76355 19 10 0 12 1 11 11 6 7 42 29 0 36 chain 188869 chr5 181538259 + 53201092 53204769 HERVH48-int 3304 + 143 3242 10173 12 3 0 6 3 0 10 22 17 11 2 0 27 2 0 30 13 0 11 32 25 4 1 0 65 4 0 8 1 0 72 1 0 12 6 0 11 12 6 82 1 0 7 3 1 10 3 0 5 3 1 9 1 0 17 15 0 24 13 4 10 2 1 5 4 0 17 1 0 4 3 1 65 2 0 42 1 0 27 7 6 68 25 17 118 4 1 9 1 0 20 1 0 15 2 0 32 3 0 3 2 0 22 2 0 4 1 0 15 1 0 21 2 0 26 1 0 19 3 0 7 11 5 122 1 0 12 1 0 8 3 2 216 4 3 19 3 4 63 2 1 291 7 0 94 1 0 149 1 0 21 2 0 67 1 0 12 1 0 47 1 0 17 315 0 149 6 5 55 8 6 19 1 0 44 1 0 4 1 0 10 3 2 9 0 1 20 2 0 15 2 0 9 231 180 14 1 0 17 3 1 5 1 0 45 1 0 3 2 0 68 62 46 56 107 81 20 chain 550095 chr5 181538259 + 53267996 53274152 L1PA3long 6157 + 0 6157 742 1249 1 0 1440 0 1 178 0 1 211 0 1 434 1 0 2642 chain 30032 chr5 181538259 + 53409656 53409971 AluYb8 318 + 1 316 42021 315 chain 415529 chr5 181538259 + 53495077 53499789 L1PA5 6144 + 1427 6141 4948 952 0 4 1299 1 0 265 1 0 288 1 0 1766 0 1 139 chain 35071 chr5 181538259 + 53548564 53549015 LTR2 463 + 0 451 37973 255 3 1 103 15 16 14 0 1 61 chain 25219 chr5 181538259 + 53585464 53585761 AluSp 311 + 1 301 48913 90 0 3 207 chain 32288 chr5 181538259 + 53589601 53590025 MLT2A1 477 + 4 477 40120 164 13 10 51 1 0 156 3 56 36 chain 51531 chr5 181538259 + 53680274 53680853 L1PA3long 6157 + 5579 6157 29032 250 3 0 309 0 2 17 chain 153533 chr5 181538259 + 53686734 53689121 L1PA11 4918 + 2330 4517 12143 300 14 14 237 35 35 463 6 8 524 294 72 84 1 13 105 0 5 123 14 21 27 0 1 20 0 3 8 2 1 73 9 7 14 1 0 20 4 0 9 chain 447382 chr5 181538259 + 53716309 53722131 L1PA8 5853 + 50 5848 4425 21 2 0 11 1 0 13 49 13 54 0 1 4 4 3 59 1 0 5 7 8 63 12 0 149 1 9 165 19 31 168 5 6 142 3 1 102 12 13 50 0 4 212 1 11 466 8 0 252 3 1 134 1 0 227 1 4 78 0 1 384 1 0 279 0 4 45 0 1 150 0 3 49 0 5 79 1 0 128 0 8 241 0 2 204 0 1 95 4 1 151 0 1 369 7 0 128 1 0 130 22 10 7 0 7 81 5 4 9 0 1 456 1 0 44 2 0 70 13 10 72 1 0 88 chain 18053 chr5 181538259 + 53726867 53727135 MER21A 919 + 19 290 58607 100 14 0 24 17 34 113 chain 65594 chr5 181538259 + 53736794 53737584 L1PA7 6471 + 5650 6461 25055 13 4 0 28 0 4 694 8 29 43 chain 398911 chr5 181538259 + 53739558 53745131 L1PB1 5432 + 19 5410 5170 29 5 15 8 9 0 311 0 1 160 6 3 146 4 11 368 0 1 170 0 4 149 1 0 7 2 0 1 5 0 57 2 1 524 6 9 354 14 0 153 0 2 339 1 0 565 0 1 34 0 1 28 0 1 253 11 9 152 3 4 119 0 1 60 0 1 38 22 13 48 2 0 314 7 8 41 0 1 75 8 13 73 0 1 119 5 0 222 10 11 4 1 0 11 1 2 38 3 2 9 151 0 20 1 0 17 0 1 4 6 2 11 0 3 48 2 1 16 1 0 44 1 0 15 3 0 8 12 4 19 8 5 14 2 0 6 0 1 12 1 0 5 1 0 20 0 3 11 1 0 6 chain 506360 chr5 181538259 + 53750516 53757897 L1PA6 6164 + 0 6160 2918 52 7 13 172 0 2 64 7 8 77 0 4 68 7 8 49 0 2 34 2 1 13 1 0 686 0 1 38 0 2 63 4 53 29 0 1 85 995 0 699 0 1 110 0 1 833 0 4 13 6 5 311 0 5 194 0 2 89 0 1 544 320 0 315 0 5 224 3 4 433 0 4 630 0 3 58 2 3 144 chain 48557 chr5 181538259 + 53762313 53762881 L1PA6 6164 + 4569 5137 30103 568 chain 37387 chr5 181538259 + 53762881 53763319 L1PA6 6164 + 5144 5583 36486 434 0 1 4 chain 35799 chr5 181538259 + 53763320 53763730 L1PA6 6164 + 5583 5993 37525 410 chain 13427 chr5 181538259 + 53763740 53763895 L1PA6 6164 + 6004 6159 64423 155 chain 128117 chr5 181538259 + 53788510 53789974 L1PA5 6144 + 4680 6144 14264 281 5 4 664 0 1 4 2 1 292 0 1 216 chain 8050 chr5 181538259 + 53792872 53793017 L1MB8 1703 + 1430 1588 74749 5 2 0 47 0 10 9 0 4 23 17 18 42 chain 256047 chr5 181538259 + 53799380 53802802 L1P2 5180 + 2 3267 8089 143 6 5 44 7 6 34 10 9 134 0 2 136 1 0 272 1 16 318 23 24 283 0 5 6 0 1 20 0 4 194 0 3 545 0 2 119 1 0 180 0 36 189 6 7 479 225 3 46 chain 503262 chr5 181538259 + 53802809 53808919 L1PA6 6164 + 2 6162 3022 199 0 1 133 12 12 162 2 1 429 0 25 213 0 9 1146 3 4 215 0 1 637 0 1 916 0 4 166 0 3 91 0 4 207 5 6 337 0 1 811 0 2 110 2 0 314 chain 109082 chr5 181538259 + 53836788 53838280 LTR12C 1709 + 0 1709 17174 212 4 3 66 14 15 42 7 50 76 11 10 130 0 1 108 0 159 199 0 47 97 44 13 390 8 7 84 chain 182539 chr5 181538259 + 53840478 53843021 L1PBa 3878 + 1259 3750 10468 99 14 15 5 0 5 32 14 2 39 0 1 39 0 1 120 16 5 139 21 31 13 0 1 353 1 2 32 0 8 236 1 0 266 1 5 6 2 0 292 9 10 31 2 1 31 0 3 41 4 5 93 2 0 253 57 0 241 2 1 22 2 0 12 chain 87416 chr5 181538259 + 53846322 53847314 L1PA3long 6157 + 5157 6149 20153 143 1 0 776 7 8 65 chain 9707 chr5 181538259 + 53910521 53910632 L1PA5 6144 + 6031 6142 71031 111 chain 58931 chr5 181538259 + 54061629 54062354 THE1B-int 1605 + 872 1597 26683 725 chain 3968 chr5 181538259 + 54115029 54115077 MER63A 208 + 53 101 91653 48 chain 73441 chr5 181538259 + 54138333 54139428 L1PB3 3668 + 2504 3581 23230 36 6 10 76 0 1 40 11 10 29 1 2 127 4 0 71 0 4 78 2 0 17 1 2 123 6 9 50 0 1 101 1 0 95 7 6 86 22 7 10 2 0 10 1 0 23 3 1 41 4 0 11 chain 48112 chr5 181538259 + 54183398 54184259 L1PA2 6032 + 5179 6029 30255 206 12 0 427 0 1 216 chain 241906 chr5 181538259 + 54197632 54200304 L1PA3long 6157 + 3480 6157 8429 223 0 1 1606 0 4 843 chain 51689 chr5 181538259 + 54268642 54269218 L1PA3long 6157 + 5568 6144 28965 576 chain 28864 chr5 181538259 + 54345136 54345563 MER57A1 433 + 0 433 43532 180 14 18 91 32 34 110 chain 27511 chr5 181538259 + 54347895 54348188 AluYa5 310 + 9 302 45567 293 chain 18753 chr5 181538259 + 54353133 54353499 THE1B 368 + 2 368 57842 57 60 57 53 1 0 19 5 7 15 0 4 16 1 0 12 1 0 62 2 0 5 1 2 17 4 5 35 chain 138147 chr5 181538259 + 54364695 54366299 L1PA7 6471 + 4868 6467 13256 1450 1 2 138 6 0 9 chain 129157 chr5 181538259 + 54380741 54382247 SVA_D 2077 + 0 2075 14126 6 6 0 13 5 6 463 0 39 13 0 40 318 10 504 11 0 1 24 0 1 15 1 2 603 2 0 16 chain 86013 chr5 181538259 + 54444258 54445329 MER11B 1079 + 0 1074 20436 316 1 18 226 40 22 191 0 3 74 0 1 223 chain 54377 chr5 181538259 + 54477042 54477687 L1PA5 6144 + 5497 6144 28091 484 1 4 11 2 1 147 chain 10526 chr5 181538259 + 54493827 54494038 MER21A 919 + 401 611 69368 62 58 61 46 4 0 41 chain 12922 chr5 181538259 + 54505431 54505595 LTR8 732 + 218 382 65215 164 chain 25726 chr5 181538259 + 54558968 54559396 L1PA13 3608 + 3113 3522 48130 47 1 0 42 1 3 68 2 0 61 1 0 57 11 8 44 2 0 5 2 0 20 1 0 9 35 27 14 1 0 4 chain 191269 chr5 181538259 + 54596955 54599560 L1PA10 4194 + 1633 4161 10054 226 0 16 223 12 6 107 0 1 10 0 4 170 4 6 208 3 2 132 17 20 15 10 19 204 10 2 89 1 6 255 5 6 36 1 0 218 0 1 90 0 1 123 100 0 287 3 0 34 1 0 11 chain 13181 chr5 181538259 + 54660645 54661143 MER30 238 + 30 238 64810 77 10 25 23 302 0 35 3 0 48 chain 121052 chr5 181538259 + 54712046 54713596 THE1B-int 1605 + 0 1592 15339 185 15 16 55 0 15 117 1 0 42 1 26 61 1 2 951 0 1 121 chain 20294 chr5 181538259 + 54782694 54783009 L1PA14 3548 + 3132 3440 56024 5 1 0 84 1 0 110 1 0 11 5 1 36 4 2 12 1 0 3 1 0 17 0 4 23 chain 60845 chr5 181538259 + 54790853 54791554 L1PA4 6152 + 2346 3051 26146 88 1 5 612 chain 534220 chr5 181538259 + 54812961 54819099 L1PA4 6152 + 18 6143 1653 139 23 10 116 1 0 197 10 5 2295 0 4 622 0 1 760 0 1 1975 chain 44944 chr5 181538259 + 54822114 54822751 MER41B 635 + 0 635 31609 51 2 0 75 0 1 193 11 12 119 31 30 81 6 5 68 chain 50169 chr5 181538259 + 54846891 54847443 L1PA3long 6157 + 5590 6142 29499 552 chain 132191 chr5 181538259 + 54864895 54866476 LTR12C 1709 + 0 1699 13808 262 0 1 456 0 118 156 0 2 77 0 2 23 0 1 14 1 0 5 3 1 106 0 4 404 8 0 14 0 1 52 chain 77654 chr5 181538259 + 54875579 54876626 MER11C 1089 + 0 1063 22171 247 7 16 54 0 4 64 1 0 150 44 43 112 1 5 4 1 0 38 0 1 127 0 1 54 1 0 117 0 1 25 chain 52442 chr5 181538259 + 54892613 54893439 L1PREC2 3366 + 2265 3048 28743 141 2 0 346 2 0 54 2 1 43 1 0 4 3 0 13 29 21 13 10 5 16 2 0 24 9 6 11 22 8 23 18 16 38 chain 76532 chr5 181538259 + 54917823 54918715 L1PA6 6164 + 5249 6150 22431 148 0 9 744 chain 375050 chr5 181538259 + 54919391 54924118 L1PA7 6471 + 1685 6467 5569 216 0 43 40 0 1 77 7 6 5 0 1 327 0 1 112 0 7 86 0 1 23 3 1 9 9 1 30 2 1 224 1 2 338 0 15 229 9 5 17 1 0 181 0 2 149 4 5 795 0 4 202 1 2 89 0 1 22 4 3 142 0 1 5 1 0 84 7 5 425 2 1 82 1 0 428 1 0 66 17 22 66 1 0 161 1 0 15 4 0 6 chain 16128 chr5 181538259 + 54992734 54993073 L1PB1 5432 + 5114 5422 60857 24 1 0 9 27 20 50 8 7 12 1 0 44 1 0 16 2 0 6 16 6 19 2 0 5 15 12 26 1 0 21 1 0 13 1 0 18 chain 38413 chr5 181538259 + 54999541 55000000 L1P1 4361 + 2600 3062 35779 238 1 4 220 chain 256373 chr5 181538259 + 55000000 55003086 L1PA6 6164 + 3081 6160 8076 108 0 1 38 18 22 613 1 2 1283 7 2 612 0 1 218 7 0 22 15 15 136 2 0 6 chain 13028 chr5 181538259 + 55012481 55012666 L1PREC2 3366 + 2690 2867 65076 51 1 0 11 2 0 54 1 0 44 1 0 4 3 0 13 chain 474194 chr5 181538259 + 55012859 55018350 L1PA5 6144 + 3 6141 3759 172 4 1 250 1 0 93 0 4 402 0 1 445 8 645 26 6 5 1635 1 3 1195 0 1 275 0 3 135 0 5 512 1 0 330 chain 388384 chr5 181538259 + 55096563 55101301 L1P2 5180 + 2 4781 5342 136 12 11 45 1 0 50 8 7 195 19 0 69 1 0 48 1 0 177 1 0 47 0 15 93 7 8 26 0 1 112 1 31 429 1 8 45 1 0 5 1 5 687 0 1 73 0 1 63 0 4 872 0 2 675 1 2 836 chain 13962 chr5 181538259 + 55135678 55135878 MER30 238 + 31 238 63642 52 10 12 12 4 9 122 chain 26603 chr5 181538259 + 55201360 55202004 L1MA9 1812 + 947 1601 46826 37 25 24 47 25 27 77 26 34 48 7 6 79 88 91 4 1 0 36 1 0 6 19 27 36 1 0 10 1 0 6 1 0 17 26 22 20 chain 43737 chr5 181538259 + 55249499 55250009 MER41A 554 + 45 554 32295 481 1 0 28 chain 10443 chr5 181538259 + 55377702 55377856 MER21A 919 + 11 167 69533 46 0 2 22 0 12 62 12 0 12 chain 4475 chr5 181538259 + 55377890 55378056 MER39 703 + 292 450 88464 40 97 89 29 chain 27217 chr5 181538259 + 55436234 55436581 THE1B 368 + 0 366 45945 44 0 15 79 0 4 32 1 0 26 0 2 91 1 0 73 chain 26047 chr5 181538259 + 55462998 55463345 L1PA8 5853 + 5507 5847 47665 55 1 0 46 1 0 74 1 0 6 1 0 17 4 3 32 2 1 19 1 0 87 chain 3821 chr5 181538259 + 55467310 55467402 MER58A 224 + 99 190 92708 19 34 33 39 chain 7339 chr5 181538259 + 55554102 55554192 MER6 865 + 624 715 76547 70 0 1 20 chain 19739 chr5 181538259 + 55558556 55558808 L1PA16 3655 + 2940 3191 56744 49 1 0 153 0 1 4 1 0 44 chain 74180 chr5 181538259 + 55571079 55572039 LTR5_Hs 974 + 0 974 23041 115 5 13 161 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 3461 chr5 181538259 + 55613827 55613883 LTR12C 1709 + 937 993 69173 56 chain 23426 chr5 181538259 + 55613883 55614317 LTR12C 1709 + 674 985 51713 17 41 0 56 82 0 90 1 0 21 0 1 126 chain 2427 chr5 181538259 + 55613912 55613941 LTR12C 1709 + 822 850 74593 15 1 0 13 chain 80661 chr5 181538259 + 55615007 55616016 HERV9-int 5642 + 4021 5025 21499 5 0 2 192 0 3 221 5 10 68 20 0 168 5 9 259 0 1 66 chain 44258 chr5 181538259 + 55624917 55625471 MER41A 554 + 0 554 31975 30 2 1 204 0 1 78 1 2 7 1 0 231 chain 28171 chr5 181538259 + 55687157 55687451 AluYd8 298 + 0 294 44603 294 chain 125421 chr5 181538259 + 55716813 55718697 THE1B-int 1605 + 0 1599 14643 195 0 1 234 1 26 207 0 1 11 0 3 75 12 6 202 3 2 505 0 1 5 309 0 125 chain 14507 chr5 181538259 + 55719176 55719399 THE1B 368 + 153 368 62890 16 1 0 6 0 3 5 23 14 96 1 0 75 chain 9785 chr5 181538259 + 55777470 55777585 5S 121 + 2 117 70854 115 chain 11706 chr5 181538259 + 55801106 55801354 MER30 238 + 0 238 67388 18 36 29 46 9 7 18 15 0 7 2 13 59 0 3 38 chain 24173 chr5 181538259 + 55850818 55851124 AluSp 311 + 10 307 50534 170 5 0 103 4 0 24 chain 23783 chr5 181538259 + 55876130 55876410 AluSc 308 + 5 285 51137 280 chain 101979 chr5 181538259 + 56035305 56036594 LTR12C 1709 + 0 1709 18065 104 6 4 684 1 319 6 2 0 107 0 4 212 0 1 19 47 17 42 0 131 59 chain 46998 chr5 181538259 + 56059782 56060710 PRIMA4_LTR 623 + 0 623 30662 91 2 1 140 1 2 10 12 14 5 1 0 47 1 0 23 305 0 19 1 0 37 2 4 179 1 0 51 chain 80708 chr5 181538259 + 56156996 56157967 LTR5_Hs 974 + 0 974 21491 458 0 4 314 7 7 128 1 0 63 chain 22479 chr5 181538259 + 56174590 56174853 AluSc 308 + 39 302 53148 263 chain 63558 chr5 181538259 + 56187165 56187923 LTR17 781 + 0 781 25510 327 1 0 248 0 1 134 2 24 39 0 1 7 chain 4035 chr5 181538259 + 56217282 56217331 Tigger1 2417 - 1083 1132 91204 49 chain 535611 chr5 181538259 + 56221366 56227498 L1PA5 6144 + 0 6144 1586 1169 9 0 86 0 1 1011 0 13 145 0 4 818 0 5 1283 0 3 616 3 0 16 3 1 973 chain 38396 chr5 181538259 + 56241478 56242006 THE1D-int 1627 + 12 542 35786 200 8 9 172 18 18 39 1 2 90 chain 11774 chr5 181538259 + 56287246 56287414 MER50 708 + 0 169 67264 46 0 1 4 5 4 36 5 6 72 chain 134745 chr5 181538259 + 56295170 56296749 LTR12C 1709 + 0 1709 13561 252 0 15 19 0 13 386 1 0 152 1 0 275 1 0 36 1 0 76 0 4 212 0 102 167 chain 4095 chr5 181538259 + 56342355 56342401 MER58A 224 + 42 88 90814 46 chain 141570 chr5 181538259 + 56371905 56373491 SVA_D 2077 + 6 2077 12977 203 1 0 516 0 3 33 3 0 141 0 487 670 1 0 18 chain 211422 chr5 181538259 + 56391431 56394520 L1PA14 3548 + 90 3440 9304 59 5 0 32 7 17 17 6 5 17 2 1 23 11 7 31 2 0 20 5 9 117 0 1 265 0 3 429 2 11 290 6 4 10 15 17 20 0 2 6 1 0 6 2 6 199 7 279 95 2 0 78 0 1 6 5 3 23 0 1 41 3 0 169 0 1 124 9 8 32 5 6 100 0 1 4 2 0 61 0 1 4 1 0 186 3 1 9 8 5 39 8 6 7 2 0 106 41 34 71 6 5 17 6 7 63 0 1 23 14 9 38 4 2 12 5 3 18 1 0 26 chain 45927 chr5 181538259 + 56437049 56437818 L1PB1 5432 + 4666 5422 31089 128 0 8 84 0 3 224 1 0 14 8 7 9 1 0 13 2 0 3 2 0 9 13 11 41 18 16 45 2 1 14 2 0 6 39 34 10 2 0 24 1 0 21 1 0 13 1 0 18 chain 3344 chr5 181538259 + 56488320 56488360 LTR12C 1709 + 837 877 96656 40 chain 16523 chr5 181538259 + 56529141 56529487 L1PB1 5432 + 5105 5418 60338 9 1 0 24 27 21 9 2 0 52 2 1 15 1 0 41 34 20 30 2 0 5 1 0 14 3 1 23 1 0 21 1 0 7 7 6 14 chain 29803 chr5 181538259 + 56611446 56611818 L1MA2 4263 + 2767 3140 42229 137 8 9 227 chain 23023 chr5 181538259 + 56627806 56628183 THE1B 368 + 0 368 52327 15 2 0 30 6 7 55 15 16 46 32 24 101 1 0 74 chain 123432 chr5 181538259 + 56628183 56629752 THE1B-int 1605 + 0 1600 14954 113 0 3 294 2 1 6 0 1 7 1 26 27 0 3 5 1 0 524 0 13 12 11 0 305 1 0 260 chain 22468 chr5 181538259 + 56629757 56630134 THE1B 368 + 0 368 53165 15 2 0 32 0 1 63 0 3 5 2 0 12 70 62 100 1 0 75 chain 9886 chr5 181538259 + 56652698 56652828 MER47A 366 + 145 302 70649 95 0 27 35 chain 28663 chr5 181538259 + 56708430 56708730 AluYb8 318 + 15 315 43857 300 chain 31761 chr5 181538259 + 56725015 56725370 L1PA7 6471 + 6084 6439 40529 355 chain 83873 chr5 181538259 + 56731032 56732012 L1PA6 6164 + 5183 6161 20832 135 0 4 131 6 0 708 chain 3617 chr5 181538259 + 56740646 56740692 L1MB4 1306 + 622 668 94296 46 chain 63955 chr5 181538259 + 56743315 56744084 L1PA7 6471 + 5698 6464 25420 108 0 1 6 1 0 596 4 0 16 0 1 38 chain 45000 chr5 181538259 + 56753581 56754078 L1PA4 6152 + 5655 6152 31586 497 chain 22157 chr5 181538259 + 56789631 56789892 L1PB1 5432 + 4834 5095 53627 261 chain 61746 chr5 181538259 + 56799529 56800220 L1P1 4361 + 3395 4085 25930 288 1 0 402 chain 13560 chr5 181538259 + 56878261 56878457 L1PA7 6471 + 6269 6465 64236 44 12 13 122 0 1 10 2 0 6 chain 8818 chr5 181538259 + 56973220 56973333 L1MB8 1703 + 1475 1588 72954 113 chain 18605 chr5 181538259 + 56982424 56982782 THE1D 372 + 0 372 57991 47 3 0 27 4 5 58 13 14 15 69 84 122 chain 11633 chr5 181538259 + 57003602 57003845 L1PB1 5432 + 5168 5392 67507 52 2 1 16 1 0 44 1 0 15 1 0 6 16 7 17 29 24 19 5 4 19 chain 3777 chr5 181538259 + 57015730 57015773 MLT1D 503 + 439 482 93013 43 chain 5981 chr5 181538259 + 57056773 57056856 MER1A 529 + 436 520 81159 21 4 5 58 chain 66131 chr5 181538259 + 57087723 57088495 L1PA7 6471 + 5699 6469 24926 760 2 0 10 chain 7016 chr5 181538259 + 57090603 57090687 Tigger1 2417 + 1501 1585 77549 84 chain 378857 chr5 181538259 + 57095653 57102184 L1PB1 5432 + 19 4801 5506 382 1 0 11 1 0 44 1 2 493 0 1 593 15 37 272 550 0 80 9 1 559 1 0 90 0 1 247 600 18 79 14 8 668 330 0 591 0 2 418 332 18 46 0 3 22 0 2 9 1 13 72 chain 5286 chr5 181538259 + 57148836 57148903 MSTA 426 + 359 426 84258 67 chain 5288 chr5 181538259 + 57149298 57149365 MSTA 426 + 359 426 84252 67 chain 42459 chr5 181538259 + 57165011 57165478 L1PA5 6144 + 5417 5884 33087 467 chain 3795 chr5 181538259 + 57227757 57227816 LTR40b 463 + 367 425 92886 31 6 5 22 chain 44965 chr5 181538259 + 57232266 57232868 LTR10C 591 + 0 591 31601 23 0 3 5 2 0 207 0 3 70 0 3 21 20 0 175 0 2 79 chain 23081 chr5 181538259 + 57238294 57238564 AluSp 311 + 10 288 52235 63 0 8 207 chain 12111 chr5 181538259 + 57282637 57282807 MSTA 426 + 237 426 66645 42 0 1 15 0 20 28 9 7 76 chain 63763 chr5 181538259 + 57286120 57287019 L1MA2 4263 + 141 1031 25460 18 1 0 3 6 0 30 0 3 50 7 6 82 4 7 11 4 0 131 9 4 72 0 1 85 14 15 372 chain 4270 chr5 181538259 + 57303927 57304019 MER50 708 + 513 595 89702 24 1 0 7 27 18 33 chain 97880 chr5 181538259 + 57308580 57309801 THE1A-int 1579 + 0 1239 18536 289 0 7 33 0 1 235 5 15 659 chain 73304 chr5 181538259 + 57372800 57373740 L1PB 1623 + 546 1481 23260 710 6 0 50 6 1 80 0 8 51 1 0 7 2 1 27 chain 36723 chr5 181538259 + 57377676 57380792 L1PA3long 6157 + 3022 6129 36945 1728 10 0 631 1 2 746 chain 20594 chr5 181538259 + 57426998 57427305 THE1B 368 + 0 307 55648 107 4 0 62 1 0 11 12 16 4 1 0 9 0 4 19 1 0 7 5 4 64 chain 12467 chr5 181538259 + 57475594 57475732 L1HS 6032 + 1918 2056 66039 138 chain 17130 chr5 181538259 + 57530996 57531196 L1PA6 6164 + 5944 6152 59663 64 0 8 136 chain 86149 chr5 181538259 + 57546636 57547664 LTR5A 1029 + 0 1029 20400 95 2 1 51 1 0 251 7 8 361 4 0 104 1 7 151 chain 2838 chr5 181538259 + 57555025 57555055 MLT1B 390 + 360 390 101338 30 chain 21102 chr5 181538259 + 57557383 57557755 MSTA 426 + 0 426 55008 110 12 41 16 0 12 27 4 0 10 0 2 22 2 0 13 12 10 37 1 0 5 27 47 74 chain 84661 chr5 181538259 + 57587904 57588852 L1PA5 6144 + 5193 6141 20690 948 chain 18566 chr5 181538259 + 57594642 57594914 L1PA8 5853 + 5589 5853 58031 19 2 0 68 3 0 3 1 0 9 1 0 11 1 2 35 6 5 19 1 0 93 chain 6075 chr5 181538259 + 57642904 57642984 MADE1 96 + 0 96 80818 46 1 17 33 chain 8163 chr5 181538259 + 57647936 57648076 MER30 238 + 116 238 74500 7 13 0 6 3 0 63 4 1 35 0 1 9 chain 45675 chr5 181538259 + 57735326 57735878 MER41A 554 + 0 554 31222 83 0 1 94 0 1 375 chain 3351 chr5 181538259 + 57762398 57762435 MER52C 1267 + 941 978 96592 37 chain 74823 chr5 181538259 + 57810347 57811184 L1PA4 6152 + 5302 6140 22887 736 0 1 101 chain 3647 chr5 181538259 + 57872950 57873044 MADE1 96 + 9 96 94041 35 8 1 51 chain 5445 chr5 181538259 + 57899945 57900024 MLT1A 405 + 295 375 83485 18 5 6 56 chain 525110 chr5 181538259 + 57922861 57928980 L1PA5 6144 + 0 6144 2043 826 2 0 1220 10 6 141 0 2 89 0 1 35 5 6 941 0 4 620 0 6 126 0 1 320 0 4 280 1 0 141 0 16 141 0 1 787 9 4 275 1 2 149 chain 202337 chr5 181538259 + 57996852 57999438 L1P2 5180 + 1951 4500 9622 376 33 15 20 0 1 184 12 5 86 0 1 4 1 0 598 6 7 267 4 0 321 20 5 519 0 4 22 0 1 113 chain 86360 chr5 181538259 + 58000006 58001246 L1PA7 6471 + 5387 6454 20348 94 170 0 26 0 3 110 1 4 78 3 1 259 0 1 395 8 0 96 chain 5522 chr5 181538259 + 58007338 58007430 MLT1C 463 + 64 148 83143 60 16 8 16 chain 194959 chr5 181538259 + 58152270 58155327 L1PB1 5432 + 2738 5420 9891 104 6 0 62 7 8 6 1 0 88 5 2 207 320 1 520 1 5 39 0 1 35 0 3 98 0 1 44 0 1 398 0 1 89 46 47 107 31 28 178 1 4 176 0 3 78 27 0 31 3 2 9 3 0 24 37 29 52 7 6 12 1 0 43 1 0 16 3 0 7 14 5 19 8 5 14 2 0 24 1 0 21 6 5 8 1 0 16 chain 116414 chr5 181538259 + 58193253 58194576 L1PA4 6152 + 4822 6139 16153 478 0 1 322 1 0 373 7 1 142 chain 535763 chr5 181538259 + 58215915 58222036 L1PA4 6152 + 6 6151 1580 422 0 1 150 0 1 815 0 9 916 1 0 7 4 0 514 0 1 935 1 2 526 1 0 46 0 4 213 0 1 126 1 9 596 0 1 322 1 0 55 0 4 316 7 0 8 0 7 138 chain 5683 chr5 181538259 + 58225450 58225579 L1MD2 1676 + 551 691 82416 50 3 0 6 2 6 18 26 36 24 chain 534045 chr5 181538259 + 58288070 58294158 L1PA3long 6157 + 19 6150 1657 133 13 14 155 0 2 108 1 0 350 0 128 726 0 1 1934 108 15 769 0 4 948 0 1 843 chain 6045 chr5 181538259 + 58291497 58291562 L1PA3long 6157 + 1570 1635 80908 65 chain 3114 chr5 181538259 + 58291562 58291598 L1PA3long 6157 + 1636 1672 96372 36 chain 103661 chr5 181538259 + 58307694 58308934 L1PA5 6144 + 4927 6137 17856 856 1 0 3 30 0 24 0 1 326 chain 28454 chr5 181538259 + 58336370 58336668 AluYb8 318 + 20 318 44189 298 chain 568042 chr5 181538259 + 58384174 58390206 L1HS 6032 + 0 6032 13 6032 chain 5694 chr5 181538259 + 58434314 58434494 MLT1A1 405 + 186 363 82374 24 89 87 50 0 1 4 2 0 11 chain 84372 chr5 181538259 + 58463694 58464693 L1PA7 6471 + 5459 6466 20741 163 0 2 74 0 2 63 0 1 116 0 3 583 chain 36174 chr5 181538259 + 58467262 58467896 MER4A 717 + 6 713 37291 120 14 0 134 11 23 36 6 22 26 0 1 108 113 172 61 1 0 4 chain 45927 chr5 181538259 + 58508836 58509518 L1PB3 3668 + 2907 3563 31090 80 2 0 19 4 0 75 3 5 127 13 13 62 1 0 103 1 0 87 21 5 14 9 7 24 3 1 34 chain 25142 chr5 181538259 + 58512757 58513090 THE1A 353 + 0 329 49050 109 5 4 89 1 0 77 2 0 50 chain 65776 chr5 181538259 + 58513411 58514363 MER11A 1151 + 2 1143 25008 53 0 99 135 8 5 94 0 1 39 14 16 90 12 13 12 1 0 123 6 9 51 1 5 49 5 7 17 1 83 182 7 6 52 chain 329926 chr5 181538259 + 58516129 58520871 L1PA11 4918 + 6 4629 6220 36 8 6 11 0 3 5 18 12 33 0 1 4 2 0 13 2 0 51 1 0 18 19 17 124 5 6 186 13 7 388 9 10 50 2 5 38 1 0 4 0 1 7 6 1 164 0 1 4 1 0 282 0 15 216 6 6 81 1 2 88 0 26 280 0 1 51 3 7 162 0 1 12 74 55 43 111 0 175 4 1 4 0 1 515 0 4 321 7 8 81 0 1 734 0 10 11 1 0 68 2 0 14 1 0 20 4 0 9 35 26 11 1 0 13 2 0 11 47 33 18 chain 22969 chr5 181538259 + 58547112 58547394 AluSp 311 + 0 277 52405 77 5 0 200 chain 545935 chr5 181538259 + 58572793 58578940 L1PA4 6152 + 1 6152 973 652 3 0 387 1 0 191 0 1 968 0 1 119 6 2 271 0 1 53 0 1 1041 2 0 246 0 1 1131 0 7 590 0 1 336 0 1 150 chain 189894 chr5 181538259 + 58605931 58608280 L1P2 5180 + 2 2339 10128 148 1 0 97 3 2 8 1 2 147 1 2 43 25 29 35 1 0 210 0 2 60 9 7 60 3 0 43 0 4 121 0 2 115 0 2 780 19 0 405 1 0 13 chain 75828 chr5 181538259 + 58608280 58609196 L1PA6 6164 + 5254 6162 22570 26 11 0 32 0 4 585 2 0 234 0 1 26 chain 38188 chr5 181538259 + 58653250 58653684 L1PA7 6471 + 5762 6196 35915 434 chain 36257 chr5 181538259 + 58656779 58657368 L1PB1 5432 + 4860 5411 37238 243 1 2 9 3 0 24 1 0 9 10 7 5 2 0 8 2 0 53 2 1 16 1 0 44 1 0 15 14 1 15 6 2 13 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 7 chain 14695 chr5 181538259 + 58684094 58684287 MER2 342 + 83 275 62684 31 7 6 155 chain 4208 chr5 181538259 + 58716824 58716973 L1MC1 2226 + 2069 2198 90072 13 6 1 20 3 1 19 53 41 20 1 0 14 chain 57937 chr5 181538259 + 58913254 58914035 MER4E1 777 + 0 777 26986 24 0 1 304 0 19 87 1 2 102 9 5 8 27 0 101 0 5 5 0 1 113 chain 63412 chr5 181538259 + 58915536 58916296 LTR17 781 + 0 774 25542 299 10 0 28 0 1 382 5 28 36 chain 45908 chr5 181538259 + 58928653 58929178 L1PA4 6152 + 5627 6152 31101 525 chain 17156 chr5 181538259 + 58986441 58986715 MER1B 344 + 36 304 59624 45 20 17 118 4 0 46 23 24 18 chain 33524 chr5 181538259 + 58995870 58996295 L1PA7 6471 + 6042 6469 39066 263 11 20 6 5 0 130 2 0 8 chain 478025 chr5 181538259 + 59010686 59016283 L1PA5 6144 + 0 6140 3675 89 0 525 555 7 1 223 9 0 128 1 2 410 0 2 863 11 15 357 1 0 172 0 6 334 1 0 667 0 4 138 7 27 109 0 1 1065 5 5 125 3 0 131 2 1 42 1 2 141 chain 13253 chr5 181538259 + 59066658 59066981 MLT1A0 366 + 0 325 64704 26 1 0 15 16 15 53 17 18 10 1 2 53 84 86 47 chain 31241 chr5 181538259 + 59218868 59219207 L1PA2 6032 + 5693 6032 40937 339 chain 30856 chr5 181538259 + 59250662 59251231 L1PA14 3548 + 2904 3453 41263 18 0 1 15 3 1 3 0 1 10 2 0 47 9 5 102 15 11 13 2 0 6 8 10 74 1 0 15 15 11 6 0 4 75 16 11 7 0 1 28 4 2 12 1 0 5 1 0 17 1 0 38 chain 69592 chr5 181538259 + 59284478 59285225 L1PA2 6032 + 5285 6032 24098 747 chain 163688 chr5 181538259 + 59306529 59308333 L1PA3long 6157 + 4315 6155 11502 1766 0 36 38 chain 36646 chr5 181538259 + 59325876 59326278 L1PA4 6152 + 5750 6152 36985 402 chain 3476 chr5 181538259 + 59326464 59326546 MER33 330 + 47 129 95400 33 30 30 19 chain 28687 chr5 181538259 + 59392113 59392524 MLT2A1 477 + 9 413 43822 101 1 11 49 4 1 8 0 1 26 0 1 178 4 0 8 12 0 20 chain 542491 chr5 181538259 + 59394720 59400743 L1PA3long 6157 + 1 6157 1177 151 0 1 211 0 1 191 5 0 179 1 5 36 0 128 1560 0 3 1047 0 1 2642 chain 22630 chr5 181538259 + 59454231 59454590 THE1B 368 + 0 366 52940 41 0 1 61 1 0 16 36 36 17 5 4 130 5 13 47 chain 125155 chr5 181538259 + 59454592 59456166 THE1B-int 1605 + 0 1605 14676 430 1 26 134 0 1 91 1 0 142 0 1 290 8 10 251 0 3 226 chain 75661 chr5 181538259 + 59463785 59464754 LTR5_Hs 974 + 0 974 22672 169 1 0 120 0 1 177 0 1 188 1 0 163 47 52 103 chain 5795 chr5 181538259 + 59477304 59477366 L1HS 6032 + 5970 6032 81944 62 chain 2993 chr5 181538259 + 59515313 59515348 MER5A1 166 + 43 78 99934 35 chain 514269 chr5 181538259 + 59631455 59637825 L1PA7 6471 + 6 6384 2555 392 0 3 47 0 2 16 0 1 544 0 1 173 0 10 431 1 0 126 2 1 58 0 1 701 6 8 68 1 0 42 0 1 9 0 2 507 0 1 30 7 6 297 0 1 6 1 0 5 2 1 48 1 5 54 4 0 421 1 0 256 0 5 334 0 1 4 1 0 51 0 4 336 22 0 506 0 4 28 0 2 61 1 4 66 5 4 12 0 1 262 2 0 171 6 2 245 chain 339991 chr5 181538259 + 59687223 59691100 L1PA5 6144 + 1624 5513 6068 216 0 5 109 0 5 727 0 5 7 5 0 466 1 0 91 0 1 1093 0 4 275 1 0 769 1 0 116 chain 25884 chr5 181538259 + 59716080 59716428 LTR18A 364 + 0 364 47891 215 3 32 7 13 0 110 chain 46406 chr5 181538259 + 59748279 59748819 L1PA5 6144 + 5612 6140 30883 435 3 0 83 9 0 10 chain 26059 chr5 181538259 + 59920702 59921021 L1PA5 6144 + 5826 6140 47645 172 6 0 72 0 1 69 chain 104294 chr5 181538259 + 59970213 59971366 L1PA3long 6157 + 5002 6157 17784 328 1 2 820 0 1 4 chain 3528 chr5 181538259 + 59972594 59972635 MER110 477 + 86 127 95039 41 chain 87495 chr5 181538259 + 60018116 60019284 L1PA10 4194 + 1208 2386 20136 83 4 0 26 3 4 116 48 52 476 0 6 176 5 4 71 0 4 160 chain 68525 chr5 181538259 + 60038058 60039595 L1PA3long 6157 + 4695 6157 24329 476 77 0 653 0 2 331 chain 170191 chr5 181538259 + 60041504 60043657 L1P3 4156 + 0 2173 11095 251 1 0 68 6 5 76 5 1 295 1 11 173 0 2 456 3 0 5 0 3 44 0 3 451 1 2 296 1 11 20 chain 353223 chr5 181538259 + 60050393 60054688 L1PA7 6471 + 2163 6468 5877 472 1 0 66 1 0 132 2 0 292 0 4 400 4 1 267 0 1 206 4 6 945 1 0 514 1 6 59 1 0 4 0 2 81 8 7 74 0 1 322 13 14 62 5 7 28 0 1 180 3 4 147 chain 166812 chr5 181538259 + 60060838 60063009 L1PA8 5853 + 3600 5780 11285 54 0 1 685 1 0 131 0 3 61 1 15 308 0 5 146 2 0 23 3 4 58 7 6 80 3 0 384 1 0 43 12 10 62 1 0 23 2 0 38 2 1 12 8 7 20 chain 15608 chr5 181538259 + 60096218 60096400 L1PA8 5853 + 4501 4684 61522 42 0 1 140 chain 550951 chr5 181538259 + 60103880 60110021 L1PA3long 6157 + 9 6157 682 1035 1 2 921 0 5 1216 0 1 2968 chain 34103 chr5 181538259 + 60120806 60121254 MLT2A1 477 + 7 477 38632 162 4 1 112 0 3 88 0 12 11 3 0 6 4 17 58 chain 4667 chr5 181538259 + 60217055 60217105 L1MB3 1562 + 1226 1276 87448 50 chain 40140 chr5 181538259 + 60296627 60297101 L1PA7 6471 + 5994 6466 34565 114 0 2 349 4 0 7 chain 29429 chr5 181538259 + 60345115 60345448 L1PA5 6144 + 5803 6135 42695 198 1 0 134 chain 4321 chr5 181538259 + 60407758 60407804 MADE1 96 + 50 96 89352 46 chain 101676 chr5 181538259 + 60415273 60416730 LTR12C 1709 + 0 1709 18104 214 13 11 16 0 1 21 0 1 27 5 6 41 8 51 54 4 3 17 3 0 143 0 1 112 0 118 72 0 78 56 28 75 97 44 13 384 14 13 84 chain 513154 chr5 181538259 + 60420579 60426689 L1PA6 6164 + 0 6161 2613 233 0 15 162 0 1 6 1 0 370 0 17 424 0 1 1101 1 2 96 0 1 756 2 0 4 0 1 50 0 4 22 0 5 60 0 1 323 0 5 685 3 1 6 0 2 462 5 6 238 0 1 61 1 0 426 0 2 146 0 2 304 10 1 12 0 8 131 2 0 7 chain 88881 chr5 181538259 + 60432508 60433778 L1PA15 4387 + 3101 4352 19875 66 6 5 53 1 0 586 3 1 15 5 0 28 0 11 21 2 0 46 1 0 171 2 1 25 2 1 54 1 0 13 4 0 19 1 0 43 13 10 44 3 1 14 5 0 23 chain 125748 chr5 181538259 + 60441100 60442590 L1PA7 6471 + 4970 6466 14594 56 0 1 112 0 1 156 0 1 324 2 0 82 1 0 618 1 0 15 2 8 23 0 1 98 chain 27411 chr5 181538259 + 60449355 60449652 L1PA3long 6157 + 5859 6156 45688 297 chain 13571 chr5 181538259 + 60491988 60492136 L1PA2 6032 + 5884 6032 64216 148 chain 31234 chr5 181538259 + 60492541 60492898 L1PA6 6164 + 5804 6161 40944 357 chain 11766 chr5 181538259 + 60530765 60530992 LTR12C 1709 + 769 1037 67279 53 41 0 15 1 0 29 9 51 59 0 41 20 chain 512212 chr5 181538259 + 60555605 60561642 L1PA4 6152 + 134 6151 2659 314 2 1 351 38 21 28 14 15 111 2 1 440 0 5 856 0 1 946 0 1 164 2 1 102 0 1 592 2 0 262 0 4 798 0 5 637 17 0 355 0 1 4 chain 34292 chr5 181538259 + 60599532 60599997 MER9a3 513 + 33 513 38498 146 0 1 76 7 6 12 1 2 42 0 21 94 1 2 9 9 1 68 chain 24762 chr5 181538259 + 60600852 60601215 THE1C 375 + 0 375 49644 62 12 7 8 0 14 11 6 7 103 8 11 126 1 0 26 chain 523397 chr5 181538259 + 60615160 60621125 L1PA4 6152 + 0 5977 2122 475 0 4 936 1 6 1628 0 1 2062 0 1 670 0 1 193 chain 30480 chr5 181538259 + 60621321 60621681 L1PA5 6144 + 5761 6131 41594 153 0 10 207 chain 868 chr5 181538259 + 60646521 60646610 MER2 342 + 19 104 78603 47 4 3 10 4 1 24 chain 30779 chr5 181538259 + 60646732 60647176 MER1A 529 + 92 529 41322 34 27 28 14 4 7 286 11 0 68 chain 323634 chr5 181538259 + 60661184 60665384 HERV17-int 4347 + 12 4347 6345 15 1 0 50 5 4 32 2 0 18 9 8 73 14 15 100 0 430 597 1 0 5 309 11 98 0 1 542 0 1 63 16 17 498 1 0 328 0 1 394 1 0 314 0 1 4 1 0 322 0 5 80 0 1 307 chain 54843 chr5 181538259 + 60665701 60666412 LTR17 781 + 1 754 27928 60 1 0 118 1 0 93 0 1 54 1 0 203 1 0 11 0 1 153 2 46 13 chain 8644 chr5 181538259 + 60673927 60674038 MER85 139 + 1 122 73362 88 0 10 23 chain 2174 chr5 181538259 + 60682105 60682128 L1PA4 6152 + 5732 5755 105405 23 chain 34808 chr5 181538259 + 60682129 60682521 L1PA4 6152 + 5755 6152 38149 386 0 5 6 chain 21237 chr5 181538259 + 60708444 60708827 MSTA 426 + 26 426 54834 82 0 5 18 17 23 24 47 52 6 2 0 73 1 0 55 0 2 12 6 8 40 chain 65139 chr5 181538259 + 60713445 60714187 L1PA5 6144 + 5401 6144 25153 110 0 1 477 7 10 5 3 0 140 chain 459984 chr5 181538259 + 60728853 60735276 L1PA7 6471 + 5 6470 4127 172 0 1 22 12 11 118 35 232 38 29 29 93 5 15 57 1 76 119 0 22 15 79 44 16 1 14 303 0 1 434 0 1 175 0 1 505 0 2 118 40 6 441 22 22 253 0 42 21 0 27 46 9 0 24 0 1 313 1 0 126 5 4 673 0 1 29 0 4 256 0 1 191 0 5 144 0 6 346 0 3 173 326 0 232 1 39 69 2 1 174 4 3 155 chain 52399 chr5 181538259 + 60774047 60774742 L1PA17 2846 + 773 1464 28756 132 17 0 60 0 3 246 0 1 97 1 10 142 chain 53041 chr5 181538259 + 60795234 60795975 LTR17 781 + 0 757 28559 59 1 0 86 13 11 23 1 0 8 8 6 13 0 1 29 1 0 26 1 2 63 1 0 369 1 23 38 chain 499519 chr5 181538259 + 60860395 60866025 L1PA3long 6157 + 4 5743 3144 147 4 5 397 0 1 222 0 128 1677 0 3 105 0 1 487 1 0 89 0 4 572 32 1 103 0 1 1061 0 1 606 0 1 127 chain 22651 chr5 181538259 + 60962556 60962844 AluSc8 310 + 6 297 52899 117 1 0 9 0 3 123 4 5 34 chain 75731 chr5 181538259 + 61007458 61008304 L1PA3long 6157 + 5303 6149 22648 846 chain 4144 chr5 181538259 + 61087559 61087749 L1ME1 1623 + 1220 1408 90494 34 124 122 32 chain 25951 chr5 181538259 + 61103812 61104157 MER47A 366 + 23 366 47793 68 1 0 99 1 0 105 0 1 18 7 6 46 chain 259282 chr5 181538259 + 61126794 61129797 L1PA5 6144 + 3138 6139 7992 26 1 0 6 1 0 73 0 3 583 0 4 97 28 17 327 3 0 354 1 0 669 0 4 135 3 5 72 0 1 119 0 1 505 chain 22569 chr5 181538259 + 61166956 61167234 AluSp 311 + 27 297 53018 227 8 0 43 chain 67535 chr5 181538259 + 61203830 61204654 L1PA6 6164 + 5215 6059 24555 99 1 5 124 0 1 217 0 14 151 2 0 51 2 5 177 chain 66708 chr5 181538259 + 61236107 61236883 L1PA6 6164 + 5376 6151 24774 449 1 0 326 chain 483024 chr5 181538259 + 61238874 61244366 L1PA4 6152 + 0 5515 3575 868 6 5 170 0 2 102 0 5 1168 1 0 7 1 0 837 0 1 93 0 5 31 0 1 457 0 11 1060 2 1 353 0 1 257 0 1 79 chain 22203 chr5 181538259 + 61267001 61267414 THE1C 375 + 8 347 53551 84 27 22 49 68 0 23 1 0 18 1 0 4 2 0 5 0 3 131 chain 6350 chr5 181538259 + 61364930 61365026 MER58B 340 + 242 340 79841 20 13 15 63 chain 13301 chr5 181538259 + 61471621 61471837 MER1B 344 + 130 339 64615 110 8 0 22 16 24 6 7 0 47 chain 19102 chr5 181538259 + 61482249 61482486 L1PA7 6471 + 6211 6455 57442 101 3 1 98 0 9 35 chain 11225 chr5 181538259 + 61624141 61624297 MER30 238 + 58 238 68211 49 3 24 30 0 6 23 3 0 48 chain 201385 chr5 181538259 + 61628013 61630383 L1PA7 6471 + 4089 6467 9668 1121 0 2 400 1 4 84 0 2 308 0 2 98 0 1 209 0 1 140 3 0 6 chain 15082 chr5 181538259 + 61700872 61701095 MER30 238 + 0 238 62170 105 6 0 8 1 23 78 2 1 23 chain 3965 chr5 181538259 + 61707712 61707788 MIR 256 + 104 181 91658 26 0 1 19 4 0 6 7 11 14 chain 44179 chr5 181538259 + 61709501 61710070 L1PA10 4194 + 3587 4105 32028 305 50 0 190 1 0 23 chain 21780 chr5 181538259 + 61772415 61772804 THE1D 372 + 0 372 54119 38 36 7 27 1 11 18 8 9 10 6 4 41 25 28 179 chain 21534 chr5 181538259 + 61785992 61786439 L1PB1 5432 + 5013 5422 54460 90 1 2 9 9 0 16 9 8 6 1 0 12 18 12 52 1 2 4 2 0 10 1 0 44 1 0 11 1 0 5 1 0 6 15 6 18 28 23 21 1 0 22 1 0 12 1 0 18 chain 25013 chr5 181538259 + 61835601 61835964 THE1A 353 + 0 353 49255 60 1 3 5 2 0 42 1 0 123 3 2 6 0 1 16 1 0 37 0 1 4 13 4 49 chain 3815 chr5 181538259 + 61850142 61850199 L1MC1 2226 + 25 81 92741 37 2 1 18 chain 207937 chr5 181538259 + 61913032 61915895 MER61-int 3695 + 900 3695 9423 119 0 1 46 8 7 174 0 1 52 0 2 13 47 4 115 1 0 97 4 0 96 1 0 429 10 6 51 0 1 30 1 3 38 0 5 194 1 2 11 12 1 11 0 1 136 0 3 61 14 10 145 1 0 102 18 14 271 2 0 151 4 0 44 2 0 83 9 6 259 chain 89755 chr5 181538259 + 61956702 61957745 L1PA7 6471 + 5422 6466 19723 199 1 0 48 1 2 339 2 1 148 0 1 6 0 1 299 chain 43554 chr5 181538259 + 62027389 62027874 L1PA4 6152 + 5119 5607 32412 187 0 4 204 1 0 93 chain 52183 chr5 181538259 + 62075976 62076686 LTR8 732 + 11 732 28823 4 0 1 14 0 9 74 9 8 286 0 3 82 0 2 23 22 20 4 1 0 191 chain 76245 chr5 181538259 + 62096312 62097181 L1PA5 6144 + 5264 6135 22498 219 0 3 545 1 0 104 chain 456991 chr5 181538259 + 62102348 62108274 HERVL-int 5654 + 0 5654 4209 114 321 0 20 19 40 304 0 3 55 1 0 4 0 5 36 0 1 63 3 5 86 1 5 164 1 3 53 0 5 98 0 4 520 19 1 209 0 1 110 9 11 389 0 2 213 0 1 473 0 2 25 0 1 184 1 0 966 0 1 103 0 4 531 0 1 199 0 1 29 9 10 374 1 2 172 1 5 46 chain 31308 chr5 181538259 + 62108274 62108693 MLT2A1 477 + 0 477 40885 17 0 4 121 0 1 26 0 4 151 1 0 58 0 2 9 15 63 21 chain 38652 chr5 181538259 + 62109479 62109982 MLT2A2 560 + 0 520 35603 183 1 0 223 0 11 18 0 7 56 0 6 6 6 0 10 chain 39661 chr5 181538259 + 62119550 62120176 LTR12 884 + 0 751 34916 189 4 161 15 3 2 10 2 0 247 95 66 61 chain 127539 chr5 181538259 + 62157910 62159490 THE1B-int 1605 + 0 1605 14349 154 0 1 131 0 1 136 3 28 106 1 0 456 10 9 583 chain 22635 chr5 181538259 + 62159490 62159845 THE1B 368 + 0 368 52935 125 0 19 10 15 0 15 1 0 29 35 45 125 chain 5286 chr5 181538259 + 62195936 62196004 MLT2D 439 + 40 108 84259 68 chain 4008 chr5 181538259 + 62237240 62237284 MADE1 96 + 52 96 91389 44 chain 17502 chr5 181538259 + 62245095 62245352 MER50 708 + 450 708 59243 34 1 0 8 18 19 174 4 5 18 chain 28314 chr5 181538259 + 62253038 62253414 THE1C 375 + 0 375 44390 125 3 0 15 2 0 24 0 1 59 5 8 74 0 1 43 1 0 25 chain 343483 chr5 181538259 + 62291544 62295566 L1P1 4361 + 1 3948 6003 229 0 1 8 1 0 498 0 1 312 6 5 392 10 6 116 0 3 786 74 0 801 1 0 773 1 2 14 chain 23061 chr5 181538259 + 62325467 62325885 L1PA16 3655 + 2917 3339 52278 172 2 1 114 105 110 25 chain 4029 chr5 181538259 + 62491509 62491645 MER33 330 + 37 202 91248 22 62 72 11 1 17 24 0 3 16 chain 15753 chr5 181538259 + 62538332 62538715 THE1D 372 + 0 372 61349 34 87 68 26 0 4 34 69 73 133 chain 152079 chr5 181538259 + 62544059 62545782 L1PA5 6144 + 3587 5318 12220 340 0 3 411 0 4 283 1 0 527 2 0 136 0 4 23 chain 379580 chr5 181538259 + 62655625 62659961 L1P1 4361 + 1 4328 5491 553 1 0 684 1 0 196 1 0 378 5 6 488 1 0 897 6 1 730 0 1 216 1 0 154 1 0 23 chain 516930 chr5 181538259 + 62752438 62758513 L1PA5 6144 + 0 6135 2421 120 1 15 18 13 25 227 6 5 395 9 26 338 9 0 44 0 1 195 0 5 504 1 0 186 0 1 207 0 1 849 1 2 523 0 1 653 0 4 949 2 1 630 0 14 43 3 0 6 6 10 137 chain 66775 chr5 181538259 + 62769771 62770650 L1PA7 6471 + 5489 6360 24753 131 2 1 14 1 0 4 1 2 113 2 1 118 16 5 133 0 2 123 0 1 170 7 9 44 chain 554756 chr5 181538259 + 62817294 62823372 L1PA2 6032 + 1 6030 428 4 0 1 696 5 12 1717 0 1 1352 58 0 2246 chain 509716 chr5 181538259 + 62837097 62843225 L1PA6 6164 + 1 6156 2782 203 3 0 256 6 5 168 25 2 161 0 17 354 0 3 47 15 42 20 0 1 147 9 11 439 0 1 456 1 0 855 0 2 127 1 0 1047 0 4 114 5 1 834 0 4 524 9 8 302 chain 549783 chr5 181538259 + 62863155 62869300 L1PA3long 6157 + 6 6157 761 2067 0 6 214 2 0 11 19 19 288 0 1 564 0 1 85 0 1 4 1 0 651 1 0 4 0 1 1315 0 1 648 12 11 259 chain 11509 chr5 181538259 + 62887789 62888081 MLT1A 405 + 68 387 67732 11 6 5 40 69 97 69 2 31 7 28 0 6 1 0 53 chain 83756 chr5 181538259 + 62925667 62926749 L1PA8 5853 + 4773 5853 20859 237 6 4 50 17 20 290 0 3 143 0 1 43 1 0 46 2 0 70 1 0 13 1 0 44 8 7 16 1 0 93 chain 24904 chr5 181538259 + 62928711 62929084 LTR7B 505 + 0 490 49423 106 1 11 54 13 81 59 1 42 88 14 13 20 0 1 4 3 1 10 chain 23747 chr5 181538259 + 62959203 62959550 THE1B 368 + 0 368 51200 44 6 21 104 6 5 50 3 9 32 1 2 101 chain 27973 chr5 181538259 + 62967173 62967550 MER57B1 401 + 0 378 44915 241 7 6 114 1 3 14 chain 139933 chr5 181538259 + 62970313 62972393 L1PB1 5432 + 54 5420 13103 223 3 4 320 1 2 161 0 3342 97 3 4 260 0 4 155 9 7 170 10 12 160 1 2 18 1 2 90 63 29 18 1 0 12 1 0 12 18 12 50 2 1 16 1 0 44 1 0 15 3 0 15 9 0 16 3 1 4 1 0 16 2 0 22 1 0 21 1 0 13 1 0 16 chain 11024 chr5 181538259 + 63008581 63008888 LTR12D 1347 + 587 776 68520 106 169 51 32 chain 7182 chr5 181538259 + 63008741 63008818 LTR12D 1347 + 437 514 76999 77 chain 4660 chr5 181538259 + 63023082 63023147 Tigger3c 601 + 343 410 87479 18 1 3 46 chain 20523 chr5 181538259 + 63072297 63072675 THE1D 372 + 16 372 55752 16 11 10 14 19 1 10 3 0 5 17 14 98 17 19 21 1 0 31 1 2 58 0 1 56 chain 348885 chr5 181538259 + 63090181 63094755 L1PA6 6164 + 3 4458 5921 155 11 12 187 34 7 85 19 0 117 22 0 3 54 0 173 21 0 52 4 21 251 0 1 396 0 4 14 0 1 17 28 16 697 0 2 115 6 0 47 21 25 199 0 2 189 2 1 430 0 1 15 0 4 154 1 0 316 5 4 645 4 12 85 chain 31877 chr5 181538259 + 63154591 63155413 MLT2A1 477 + 2 477 40435 140 0 1 26 0 4 104 1 0 44 1 2 61 399 47 46 chain 31805 chr5 181538259 + 63195539 63195942 MER11C 1089 + 0 469 40492 48 0 54 137 7 16 62 0 4 65 1 0 83 chain 14483 chr5 181538259 + 63261120 63261352 Tigger3c 601 + 67 299 62912 35 40 37 7 0 2 137 0 1 13 chain 64489 chr5 181538259 + 63320315 63322067 L1PA3long 6157 + 4004 5742 25314 689 18 0 617 0 4 428 chain 27868 chr5 181538259 + 63330466 63330791 L1P2 5180 + 1912 2235 45080 218 2 0 105 chain 87286 chr5 181538259 + 63336393 63337375 L1PA4 6152 + 2635 3618 20173 64 10 11 908 chain 119161 chr5 181538259 + 63361124 63362671 L1PA7 6471 + 2654 6461 15664 164 19 9 273 0 4 26 1 0 354 1 2 5 1 0 6 2 0 26 1 0 26 0 4 18 8 2273 443 11 12 162 chain 481191 chr5 181538259 + 63375749 63381967 L1PA7 6471 + 56 6467 3604 110 46 45 67 0 2 28 21 202 242 1 0 16 19 0 6 6 23 139 10 9 607 0 1 205 15 16 127 6 0 63 0 1 48 1 0 214 3 1 225 0 3 175 4 1 66 1 2 8 1 5 76 3 0 59 0 6 163 28 31 48 0 4 198 26 25 167 10 7 167 0 2 271 9 7 54 0 2 523 0 4 146 0 4 272 3 0 216 0 1 55 0 1 264 2 0 135 0 3 643 0 1 35 7 6 158 chain 316944 chr5 181538259 + 63488541 63492063 L1PA4 6152 + 2442 5971 6472 823 0 2 747 1 2 876 0 1 636 0 1 144 0 1 142 0 1 153 chain 508751 chr5 181538259 + 63506972 63513433 L1PA7 6471 + 0 6463 2812 243 0 10 217 1 0 39 5 0 7 1 7 224 2 0 5 1 0 29 3 1 320 0 1 19 8 19 340 39 1 466 0 2 680 1 0 10 21 0 930 0 5 16 0 1 4 1 0 10 0 1 193 0 1 127 0 10 64 1 0 94 0 2 67 1 19 472 15 19 9 3 4 914 0 1 13 1 0 69 2 0 23 0 3 71 0 1 353 0 1 315 1 0 11 chain 211159 chr5 181538259 + 63524985 63527617 L1PA8 5853 + 3236 5853 9313 401 0 1 320 1 0 4 1 2 162 0 1 32 0 3 48 1 0 440 0 1 173 0 1 36 14 0 148 2 0 63 2 0 20 0 2 425 0 2 43 1 0 44 2 0 69 14 12 51 2 1 19 1 0 93 chain 5312 chr5 181538259 + 63560417 63560478 L1PA4 6152 + 4303 4364 84134 61 chain 88074 chr5 181538259 + 63560478 63561467 L1PA4 6152 + 4369 5358 20033 989 chain 86665 chr5 181538259 + 63578760 63579722 L1PA4 6152 + 5006 5968 20281 962 chain 540786 chr5 181538259 + 63581796 63587930 L1PA3long 6157 + 0 6157 1294 70 0 1 80 1 2 163 5 6 752 0 1 157 1 2 177 0 9 970 0 4 2282 1 2 450 0 1 91 0 3 155 1 0 686 0 1 92 chain 15770 chr5 181538259 + 63601784 63602142 THE1B 368 + 0 368 61324 64 70 71 33 66 75 125 chain 94151 chr5 181538259 + 63628811 63629863 L1PA4 6152 + 2871 3923 19024 1052 chain 39163 chr5 181538259 + 63712640 63713250 LTR12F 595 + 0 594 35241 70 0 37 36 3 1 33 1 8 25 14 5 31 3 2 35 54 6 305 chain 82016 chr5 181538259 + 63748136 63749074 L1PA4 6152 + 5197 6134 21238 553 3 0 5 0 3 140 1 0 236 chain 27867 chr5 181538259 + 63759784 63760083 L1PA3long 6157 + 5858 6157 45083 299 chain 51855 chr5 181538259 + 63767076 63767739 L1PA8 5853 + 5152 5812 28920 30 1 0 7 0 3 211 0 1 160 1 0 45 2 0 66 14 13 51 3 2 15 6 5 51 chain 116532 chr5 181538259 + 63784482 63786041 THE1A-int 1579 + 0 1574 16130 268 0 9 83 0 6 47 1 0 89 2 1 234 41 42 138 0 1 191 1 3 33 14 12 360 1 2 43 1 0 12 chain 19173 chr5 181538259 + 63786046 63786400 THE1A 353 + 0 353 57371 13 2 0 34 0 1 42 58 59 49 1 0 30 16 17 76 1 0 32 chain 72019 chr5 181538259 + 63847697 63848514 L1PA5 6144 + 4955 5775 23534 20 0 1 300 0 4 360 2 0 135 chain 24673 chr5 181538259 + 63880284 63880567 L1PA5 6144 + 5855 6138 49769 283 chain 4256 chr5 181538259 + 63885268 63885345 MER5A 189 + 40 119 89780 6 0 1 24 16 17 31 chain 50326 chr5 181538259 + 63887110 63887693 LTR10C 591 + 0 586 29439 85 0 1 424 1 3 73 chain 4460 chr5 181538259 + 63941555 63941609 HSMAR1 1287 + 1228 1282 88558 54 chain 162329 chr5 181538259 + 63942606 63944370 L1PA2 6032 + 4267 6031 11591 1764 chain 123756 chr5 181538259 + 63971758 63973325 L1P3 4156 + 2538 4102 14889 433 0 2 7 3 1 44 8 4 20 1 0 185 1 4 95 1 0 756 1 0 5 0 1 7 chain 517554 chr5 181538259 + 64087186 64105178 L1PA4 6152 + 0 6152 2394 919 1 0 512 0 5 459 11851 0 894 0 2 2082 0 4 1062 0 1 212 chain 43788 chr5 181538259 + 64089503 64092481 L1PA4 6152 + 2320 5301 7570 1449 4 5 269 0 1 999 0 1 257 chain 7528 chr5 181538259 + 64107725 64108237 L1PA4 6152 + 5382 5891 7570 148 0 4 13 9 2 342 chain 21489 chr5 181538259 + 64108237 64108496 L1PA4 6152 + 5893 6152 54522 259 chain 19435 chr5 181538259 + 64112950 64113206 L1PREC2 3366 + 1783 2036 57099 82 12 9 162 chain 34308 chr5 181538259 + 64142839 64143271 MER57A1 433 + 0 433 38490 279 3 4 150 chain 3906 chr5 181538259 + 64150588 64150647 LTR12C 1709 + 1019 1203 92083 38 3 128 18 chain 15084 chr5 181538259 + 64150698 64150885 LTR12C 1709 + 650 877 62169 167 0 40 20 chain 5475 chr5 181538259 + 64161882 64161950 LTR10G 522 + 416 486 83328 32 0 2 36 chain 110030 chr5 181538259 + 64225290 64226678 SVA_A 1864 + 453 1864 17078 8 0 2 73 0 3 69 39 0 7 2 0 38 2 0 112 0 2 106 48 7 6 1 0 99 13 0 48 0 110 290 0 4 427 chain 2757 chr5 181538259 + 64225440 64225479 SVA_A 1864 + 756 795 29687 39 chain 2562 chr5 181538259 + 64225762 64225794 SVA_A 1864 + 737 769 67270 32 chain 116533 chr5 181538259 + 64235994 64237625 THE1D-int 1627 + 0 1619 16129 38 1 0 166 6 0 276 6 7 4 1 0 208 21 21 167 0 3 180 6 8 218 4 7 25 54 40 45 1 2 204 chain 520335 chr5 181538259 + 64242797 64249264 L1PA7 6471 + 6 6470 2261 221 1 2 299 0 5 283 5 0 208 0 1 287 0 1 248 0 4 66 2 1 148 1 0 11 0 2 609 29 0 237 0 2 91 0 1 407 0 6 132 6 0 127 0 2 69 0 1 72 0 4 460 1 2 15 0 1 224 3 0 419 0 4 270 0 1 291 0 1 221 1 2 157 0 3 56 11 8 34 0 1 267 0 3 26 1 0 289 17 18 140 1 0 4 chain 9275 chr5 181538259 + 64257773 64257880 L1P1 4361 + 2514 2621 71960 107 chain 29394 chr5 181538259 + 64273040 64273416 MER41B 635 + 174 547 42744 206 3 0 167 chain 116444 chr5 181538259 + 64321063 64322545 L1PA8A 6298 + 4225 5731 16146 60 1 0 59 27 21 30 0 1 148 0 4 130 0 2 103 0 3 210 0 5 136 0 2 333 0 4 4 0 1 7 0 3 49 4 10 181 chain 16674 chr5 181538259 + 64322641 64322979 L1PB1 5432 + 5114 5430 60182 18 1 0 14 1 0 11 6 2 9 6 4 48 2 1 16 1 0 8 1 0 20 0 1 14 1 0 15 24 13 11 1 8 4 1 0 15 2 0 24 1 0 21 1 0 27 1 0 5 1 0 7 chain 30700 chr5 181538259 + 64360253 64360610 L1P1 4361 + 3821 4184 41386 151 6 13 165 1 0 34 chain 82358 chr5 181538259 + 64368553 64369470 L1PA3long 6157 + 5239 6157 21164 87 0 1 830 chain 51271 chr5 181538259 + 64378725 64379473 MER4E 760 + 0 760 29141 17 1 0 134 75 75 45 0 1 89 1 3 80 1 0 89 2 1 103 1 0 32 5 18 73 chain 9353 chr5 181538259 + 64397989 64398269 L1PA11 4918 + 4367 4629 71807 21 7 6 13 4 2 48 1 0 17 3 1 13 1 0 9 36 42 15 1 0 13 2 0 11 46 32 19 chain 407250 chr5 181538259 + 64406671 64411987 L1PA7 6471 + 5 6358 5054 230 34 41 24 0 1 102 14 0 70 1 0 92 0 5 7 18 10 154 0 5 67 0 65 229 0 1 144 0 19 70 0 1 4 1 0 272 1 13 128 0 1 446 4 0 45 11 10 141 1 2 85 1 0 148 1 2 457 0 4 384 3 2 114 5 6 90 8 992 174 5 6 261 40 5 82 0 1 36 0 1 366 6 5 277 3 2 106 2 1 25 9 4 318 chain 10412 chr5 181538259 + 64421210 64421358 L1MA3 4352 + 1320 1469 69588 23 4 0 28 1 6 92 chain 12420 chr5 181538259 + 64432499 64432714 L1MA4 2864 + 2484 2682 66105 12 13 0 129 12 11 34 4 1 11 chain 8933 chr5 181538259 + 64440641 64440750 LTR8 732 + 587 696 72710 109 chain 201238 chr5 181538259 + 64470925 64473299 L1P2 5180 + 1836 4231 9676 200 6 7 133 1 0 150 1 0 112 2 0 137 0 4 312 6 16 148 6 14 107 0 1 302 0 1 56 0 1 167 1 0 527 chain 260585 chr5 181538259 + 64473756 64477088 L1P3 4156 + 3 3401 7952 248 2 1 67 2 1 139 0 1 5 0 1 142 1 0 191 2 3 24 5 0 439 3 4 283 0 1 651 1 2 173 0 48 209 23 25 106 12 13 4 0 1 101 5 9 284 3 11 47 0 3 131 0 1 29 chain 552400 chr5 181538259 + 64477092 64483253 L1PA3long 6157 + 4 6157 586 30 8 1 999 0 1 816 6 1 474 2 0 1188 0 1 407 1 0 1388 0 4 217 0 1 292 1 0 299 0 1 33 chain 15635 chr5 181538259 + 64676625 64676825 MER107 203 + 4 203 61490 153 0 2 5 3 0 39 chain 92760 chr5 181538259 + 64696004 64697160 MER11A 1151 + 0 1141 19224 176 8 0 23 2 0 31 5 4 60 0 2 6 1 0 86 1 0 417 2 1 34 27 24 277 chain 4359 chr5 181538259 + 64719085 64719162 MER3 215 + 11 88 89112 30 4 0 9 4 8 30 chain 44534 chr5 181538259 + 64754938 64755603 L1PA16 3655 + 2968 3619 31811 15 0 2 219 1 0 49 3 2 35 6 4 67 0 4 167 1 0 30 0 3 6 42 25 7 1 0 16 chain 43238 chr5 181538259 + 64760243 64760803 LTR19B 566 + 0 566 32621 149 0 1 145 5 10 171 1 0 26 0 1 12 0 1 5 11 10 35 chain 2977 chr5 181538259 + 64785080 64785121 MIRb 242 + 154 194 100076 5 1 0 35 chain 13296 chr5 181538259 + 64813962 64814196 MER30 238 + 0 238 64626 64 17 12 32 4 0 14 16 32 45 3 0 39 chain 3002 chr5 181538259 + 64826144 64826180 MLT2C1 407 + 367 403 99824 36 chain 42829 chr5 181538259 + 64897192 64897756 L1PA6 6164 + 5612 6162 32872 364 8 1 16 25 26 75 11 3 65 chain 53215 chr5 181538259 + 64903012 64903692 L1PA8 5853 + 5181 5853 28497 340 6 5 38 1 0 44 2 0 70 2 1 60 3 2 19 4 3 26 1 0 64 chain 63388 chr5 181538259 + 65030481 65031276 LTR17 781 + 0 773 25547 272 0 1 54 1 0 387 36 14 45 chain 20963 chr5 181538259 + 65059525 65059812 MSTA-int 1630 + 458 743 55177 11 1 2 8 2 1 171 2 0 92 chain 16331 chr5 181538259 + 65094080 65094663 L1M1 2793 + 525 1001 60596 9 1 0 6 1 0 14 2 0 8 3 0 8 1 0 9 1 0 11 164 93 14 98 78 27 1 0 15 15 13 9 1 0 46 13 11 6 1 0 99 chain 25214 chr5 181538259 + 65096103 65096390 AluSp 311 + 6 296 48919 85 0 3 202 chain 558825 chr5 181538259 + 65164017 65170048 L1PA2 6032 + 0 6031 203 6031 chain 9141 chr5 181538259 + 65174179 65174289 LTR2 463 + 353 463 72253 110 chain 307965 chr5 181538259 + 65176109 65179688 Harlequin-int 5206 + 125 3710 6660 24 1 0 151 2 0 65 0 7 109 6 1 200 1 0 35 0 2 12 0 1 39 8 1 74 0 1 360 0 3 845 0 1 222 0 3 6 0 1 285 1 0 92 0 1 359 0 3 682 chain 28735 chr5 181538259 + 65210170 65210470 AluYg6 310 + 0 300 43738 300 chain 32494 chr5 181538259 + 65235391 65235827 MLT2A1 477 + 0 477 39949 169 4 1 9 0 1 23 0 1 26 0 2 153 4 0 8 6 50 34 chain 3957 chr5 181538259 + 65275626 65275670 L1PA8 5853 + 5809 5853 91704 44 chain 30973 chr5 181538259 + 65317372 65317791 L1MA2 4263 + 3232 3642 41149 48 4 0 104 1 2 13 1 0 167 1 0 16 8 4 56 chain 515111 chr5 181538259 + 65370263 65376020 L1PA3long 6157 + 0 5906 2516 152 0 1 265 0 1 146 0 1 210 0 128 54 1 5 83 1 0 629 1 0 383 0 16 3832 chain 219949 chr5 181538259 + 65406887 65409922 L1P2 5180 + 1394 3919 9044 435 1 0 7 511 0 206 1 0 1295 0 2 289 0 1 290 chain 12316 chr5 181538259 + 65587717 65587953 MER44A 345 + 53 310 66269 48 9 15 13 0 1 38 0 10 54 49 53 25 chain 4786 chr5 181538259 + 65599321 65599382 U3 216 + 5 66 86764 61 chain 269719 chr5 181538259 + 65675585 65679340 L1PA11 4918 + 759 4509 7714 116 0 4 231 0 4 310 98 0 123 0 1 91 1 2 35 0 4 62 1 118 86 23 9 9 0 5 31 23 19 195 6 2 44 0 4 23 0 1 36 0 9 79 15 1 127 9 0 174 2 0 79 1 0 323 4 5 26 6 0 414 0 1 179 0 1 122 2 0 7 0 2 31 0 4 87 12 8 59 15 19 116 4 1 94 11 12 27 1 0 62 2 1 13 2 0 6 1 0 62 19 16 18 chain 21033 chr5 181538259 + 65735026 65735331 THE1C 375 + 0 375 55078 31 0 64 9 5 6 26 1 5 40 4 5 189 chain 15054 chr5 181538259 + 65748857 65749156 THE1B 368 + 0 306 62200 58 62 63 48 1 0 6 4 5 18 0 3 9 0 4 18 1 0 10 2 1 27 0 1 35 chain 8617 chr5 181538259 + 65807218 65807392 Tigger1 2417 + 2079 2215 73416 27 40 7 31 5 1 26 1 0 44 chain 9219 chr5 181538259 + 65879144 65879254 Tigger1 2417 + 1721 1831 72085 110 chain 162663 chr5 181538259 + 65939509 65941331 SVA_D 2077 + 6 2077 11566 18 9 0 884 2 0 9 2 0 11 0 38 36 0 46 5 0 2 38 1 0 119 0 177 688 chain 30998 chr5 181538259 + 65973046 65973412 L1PA5 6144 + 5770 6143 41125 135 0 7 231 chain 105896 chr5 181538259 + 66005551 66006752 L1PA4 6152 + 4137 5353 17578 7 0 4 206 0 4 277 3 6 663 0 4 45 chain 162347 chr5 181538259 + 66102273 66104827 L1PBa1 4058 + 1623 4017 11589 39 1 0 78 6 0 120 22 11 213 1 0 196 11 15 172 32 209 98 0 3 66 0 1 5 0 6 125 0 4 188 1 7 256 1 0 114 9 1 56 317 0 59 1 0 7 2 1 28 1 0 41 2 0 108 3 1 17 1 0 12 7 0 15 2 0 13 1 0 4 0 10 18 26 22 5 1 0 5 1 0 9 1 0 16 2 1 19 chain 518380 chr5 181538259 + 66105957 66112076 L1PA6 6164 + 0 6162 2345 370 28 35 95 11 10 57 1 0 220 0 17 444 1 0 586 0 1 51 1 2 1009 0 2 30 7 5 245 5 0 6 3 0 4 0 1 1170 0 12 180 2 12 110 3 5 635 1 5 559 1 0 132 0 1 6 1 0 145 chain 6621 chr5 181538259 + 66113556 66113639 L1MB2 1706 + 802 885 78895 83 chain 3962 chr5 181538259 + 66121411 66121514 MLT1C 463 + 74 171 91683 17 15 16 17 22 15 32 chain 11946 chr5 181538259 + 66136532 66136691 THE1D-int 1627 + 17 178 66927 80 7 10 10 1 0 61 chain 11216 chr5 181538259 + 66303873 66304011 MER6A 605 + 369 507 68222 138 chain 23287 chr5 181538259 + 66321156 66321577 L1MA5A 2387 + 1946 2306 51949 85 32 7 9 0 3 5 3 0 52 1 0 48 6 4 23 1 0 35 3 0 12 29 1 66 1 0 10 chain 13477 chr5 181538259 + 66361798 66361966 MER30 238 + 46 238 64340 68 0 24 100 chain 268997 chr5 181538259 + 66381963 66391833 L1PB2 3958 + 25 3838 7733 26 1 0 5 18 14 14 5 0 20 9 4 32 2 0 17 25 21 49 6 3 46 23 24 160 16 0 133 4 8 160 6032 0 254 0 1 201 5 7 122 0 3 233 3 0 405 0 3 69 0 2 123 0 1 94 12 15 102 4 1 24 1 0 45 1 0 14 16 11 83 0 4 160 0 1 23 0 5 157 1 0 181 0 6 18 0 3 71 1 2 103 2 0 55 1 0 8 1 0 68 2 0 12 4 0 9 0 1 84 2 0 15 0 1 56 1 0 10 7 8 46 1 0 72 2 0 22 1 0 42 0 3 18 chain 26612 chr5 181538259 + 66453681 66454066 MSTA 426 + 2 426 46814 104 12 33 99 16 14 44 1 21 109 chain 58649 chr5 181538259 + 66477908 66479299 MER4E1 777 + 5 768 26773 18 1 0 207 3 1 59 1 0 175 640 0 32 8 0 43 1 25 203 chain 18749 chr5 181538259 + 66482087 66482372 L1P2 5180 + 30 312 57844 115 5 4 45 1 0 45 25 24 49 chain 90441 chr5 181538259 + 66503112 66504552 LTR12C 1709 + 0 1709 19598 42 38 42 172 37 48 32 0 43 85 7 9 80 4 0 20 3 0 31 3 1 103 1 201 162 0 47 97 44 13 35 0 2 50 56 58 90 5 4 154 16 15 73 chain 43596 chr5 181538259 + 66563473 66564017 MER41A 554 + 0 554 32384 114 2 0 147 1 8 199 0 5 81 chain 2956 chr5 181538259 + 66576668 66576699 HY1 111 + 75 106 100307 31 chain 352372 chr5 181538259 + 66750283 66754219 L1HS 6032 + 0 3934 5888 67 5 6 1038 0 2 1466 6 0 436 0 1 918 chain 12850 chr5 181538259 + 66816149 66816339 MER30 238 + 37 238 65352 72 7 18 25 0 6 7 6 0 73 chain 77008 chr5 181538259 + 67173024 67173872 L1PA3long 6157 + 5303 6157 22312 834 0 6 14 chain 136297 chr5 181538259 + 67250780 67252271 L1PA3long 6157 + 3743 5233 13411 1486 1 0 4 chain 20125 chr5 181538259 + 67319138 67319403 LTR12C 1709 + 691 1203 56225 146 1 0 33 0 248 85 chain 2776 chr5 181538259 + 67319404 67319436 LTR12C 1709 + 837 869 101786 32 chain 33375 chr5 181538259 + 67437246 67437638 THE1B-int 1605 + 1207 1599 39195 135 1 0 4 0 1 252 chain 204027 chr5 181538259 + 67539714 67541962 L1PA3long 6157 + 3912 6157 9570 807 0 1 1042 4 0 395 chain 6537 chr5 181538259 + 67562596 67562699 MER47A 366 + 244 347 79210 35 13 12 5 0 1 50 chain 27218 chr5 181538259 + 67634454 67634810 THE1B 368 + 0 368 45941 44 0 15 113 1 0 16 6 4 102 1 0 5 0 1 68 chain 27170 chr5 181538259 + 67668328 67668684 THE1D-int 1627 + 0 358 46012 10 4 3 116 4 6 159 0 1 63 chain 7345 chr5 181538259 + 67683474 67683573 LTR19B 566 + 466 566 76532 46 1 2 52 chain 16246 chr5 181538259 + 67693589 67693816 L1PA8 5853 + 5595 5816 60691 13 2 0 74 1 0 12 1 0 41 7 6 19 1 0 56 chain 459338 chr5 181538259 + 67703676 67708855 L1PA4 6152 + 2 5183 4146 100 1 2 1876 0 1 3202 chain 16132 chr5 181538259 + 67716203 67716393 L1PA8A 6298 + 6097 6287 60848 190 chain 24578 chr5 181538259 + 67748472 67748883 LTR7B 505 + 0 491 49885 108 0 10 46 51 31 19 1 89 62 1 0 31 0 1 10 1 3 31 14 13 16 0 1 20 chain 537073 chr5 181538259 + 67757565 67763688 L1PA4 6152 + 13 6143 1505 481 0 2 197 0 1 69 4 0 380 0 2 1056 0 2 207 0 1 759 0 1 1173 0 2 319 1 0 911 1 0 146 0 2 419 chain 549493 chr5 181538259 + 67780013 67786163 L1PA3long 6157 + 4 6157 784 97 1 2 47 14 0 1061 0 5 700 0 3 1107 0 1 869 0 2 48 0 1 624 0 1 725 0 3 857 chain 66447 chr5 181538259 + 67812606 67813686 L1PB1 5432 + 4409 5422 24841 59 4 1 122 8 9 25 1 0 82 1 0 6 7 8 258 1 0 119 11 7 9 29 0 20 1 0 8 3 2 14 5 1 9 2 0 52 22 20 41 1 0 20 18 7 18 10 7 13 2 0 24 1 0 22 1 0 12 1 0 18 chain 540923 chr5 181538259 + 67817944 67823951 L1PA3long 6157 + 9 6152 1286 143 0 1 623 0 128 2360 0 4 1965 1 0 459 1 5 455 chain 107081 chr5 181538259 + 67836520 67837740 L1PA5 6144 + 4913 6144 17423 158 0 10 627 0 1 435 chain 551561 chr5 181538259 + 67889604 67895628 L1PA2 6032 + 0 6032 636 256 1 0 662 1 0 365 0 9 3161 0 1 1578 chain 150355 chr5 181538259 + 67928610 67930278 L1PA4 6152 + 4197 5878 12324 1107 0 4 77 0 8 85 0 1 399 chain 11779 chr5 181538259 + 67972912 67973050 MSTA 426 + 270 408 67255 138 chain 54516 chr5 181538259 + 67982054 67982676 L1PA5 6144 + 5511 6135 28041 425 0 2 197 chain 31707 chr5 181538259 + 67983633 67984033 MER57B1 401 + 0 400 40573 400 chain 12982 chr5 181538259 + 68043992 68044175 MER30 238 + 46 238 65136 60 4 16 73 3 0 43 chain 392084 chr5 181538259 + 68061272 68065833 L1PA6 6164 + 1603 6149 5290 131 0 1 590 0 1 299 0 1 318 11 0 361 0 1 391 5 0 155 0 1 425 10 4 1112 0 2 753 chain 525775 chr5 181538259 + 68102236 68108726 L1PA6 6164 + 3 6156 2011 157 2 1 75 0 2 152 14 15 113 0 2 47 1 0 671 0 1 1093 0 2 430 0 2 419 4 0 4 0 1 890 335 0 118 11 3 1154 0 2 653 2 1 145 chain 100569 chr5 181538259 + 68123390 68124997 L1PA13 3608 + 86 3440 18227 4 1 0 19 6 4 21 24 21 8 1 0 14 3 0 24 24 17 61 15 13 110 0 3 11 1 0 12 2 1 15 0 3 5 5 0 10 6 2 15 1 0 15 39 34 6 1 0 18 0 1 78 2 0 408 2 1 60 0 9 131 6 5 64 2 1781 42 1 0 12 0 1 14 2 1 114 2 0 61 1 0 56 1 0 5 2 0 44 chain 41913 chr5 181538259 + 68143623 68144098 L1PA7 6471 + 5986 6461 33416 475 chain 36735 chr5 181538259 + 68157608 68158079 L1PA8 5853 + 5387 5853 36938 177 1 0 44 2 0 69 4 3 23 0 1 36 2 1 19 2 1 92 chain 29092 chr5 181538259 + 68176095 68177023 Tigger3b 1229 + 54 1205 43200 47 158 702 129 1 0 7 333 3 6 3 0 39 2 12 157 11 14 35 chain 26684 chr5 181538259 + 68178002 68178306 AluYk4 311 + 0 304 46708 304 chain 18860 chr5 181538259 + 68294764 68294973 L1PA2 6032 + 5821 6032 57698 31 0 2 178 chain 116406 chr5 181538259 + 68497183 68498753 THE1B-int 1605 + 0 1593 16155 430 1 26 191 10 7 463 72 12 11 0 60 140 0 1 252 chain 26515 chr5 181538259 + 68498764 68499130 THE1B 368 + 0 368 46955 15 27 30 127 3 2 194 chain 379611 chr5 181538259 + 68565929 68571704 L1PB1 5432 + 31 5398 5489 120 7 0 7 7 14 134 18 17 109 26 39 291 10 12 141 0 1 4 1 3 57 0 19 384 14 20 7 1 0 969 0 4 74 0 3 33 101 17 222 0 1 4 1 0 37 35 59 9 2 0 297 0 1 65 0 6 316 8 0 200 1 5 42 7 8 202 1 0 637 1 0 5 2 0 117 0 1 68 2 1 115 320 0 168 116 64 8 2 0 52 24 22 39 1 0 21 16 6 15 39 34 13 1 0 22 1 0 6 chain 46219 chr5 181538259 + 68590052 68590665 HSMAR1 1287 + 675 1287 30950 58 5 4 176 0 3 5 21 18 348 chain 78939 chr5 181538259 + 68601265 68602312 MER11C 1089 + 0 1063 21889 246 0 9 58 0 4 68 1 0 102 0 1 46 50 49 105 0 4 7 1 0 38 0 1 127 0 1 54 14 13 130 chain 195780 chr5 181538259 + 68624309 68626525 L1PA5 6144 + 3860 6077 9850 833 0 1 440 0 1 247 1 0 695 chain 11785 chr5 181538259 + 68633902 68634050 L1PA8 5853 + 5701 5847 67241 41 1 0 18 1 0 87 chain 514210 chr5 181538259 + 68691640 68697646 L1PA5 6144 + 12 6129 2559 106 7 20 18 0 12 568 4 3 79 0 17 301 0 2 31 9 0 824 0 1 39 3 8 266 4 0 862 1 3 314 0 4 192 1 0 662 0 4 345 3 13 548 11 67 659 3 4 11 1 0 134 chain 133362 chr5 181538259 + 68717933 68719866 L1PA7 6471 + 4758 6467 13706 268 309 0 154 0 4 44 1 78 247 4 3 65 1 0 52 1 0 25 0 2 499 0 4 116 1 2 146 chain 31614 chr5 181538259 + 68815136 68815586 MLT2A1 477 + 0 477 40651 16 1 5 125 22 24 215 4 0 14 12 37 41 chain 49459 chr5 181538259 + 68850568 68851413 Tigger2 2703 + 0 817 29786 142 21 20 106 70 72 8 1 0 59 3 4 28 6 5 120 2 1 198 4 3 14 42 16 21 chain 529001 chr5 181538259 + 68864973 68871433 L1PA7 6471 + 19 6461 1880 121 28 13 257 16 19 45 2 0 750 0 1 136 6 2 22 8 11 428 0 4 318 0 1 433 0 10 42 7 0 453 0 3 227 0 1 185 2 0 44 1 0 78 2 0 424 2 1 80 0 1 206 7 8 278 1 0 81 0 1 385 15 3 530 1 0 515 0 1 324 chain 24202 chr5 181538259 + 68876819 68877073 AluYa5 310 + 35 289 50495 254 chain 14515 chr5 181538259 + 68921324 68921791 LTR12C 1709 + 773 1541 62885 64 1 0 46 0 119 43 1 33 6 0 9 16 247 389 43 chain 3949 chr5 181538259 + 68923567 68923617 LTR32 486 + 23 74 91762 32 0 1 18 chain 20879 chr5 181538259 + 68959559 68959802 L1PA5 6144 + 5903 6144 55280 229 3 1 11 chain 271917 chr5 181538259 + 68976193 68980417 L1MA1 4479 + 228 4162 7663 42 10 8 297 6 5 120 0 4 81 9 1 148 51 123 181 1 0 55 0 3 63 0 6 99 0 1 213 0 2 244 12 7 37 0 4 73 0 1 35 0 2 7 0 1 5 307 2 68 7 0 7 0 4 353 5 3 69 1 0 18 12 3 45 1 0 102 3 1 33 1 0 30 1 0 4 0 1 24 12 13 82 1 0 27 2 0 28 1 0 145 2 0 17 4 0 72 5 4 12 5 0 126 3 0 42 1 0 23 7 0 55 5 4 202 7 6 18 1 0 16 1 0 71 1 0 19 2 0 7 0 1 6 1 0 69 0 1 18 22 18 60 0 1 20 10 5 23 5 4 25 6 4 32 4 3 9 1 0 11 chain 11219 chr5 181538259 + 69086293 69086662 Tigger7 736 + 99 471 68218 21 12 12 18 175 179 107 11 10 25 chain 30182 chr5 181538259 + 69091232 69091647 LTR46 455 + 0 411 41866 34 5 4 46 6 5 97 0 1 6 12 10 105 1 0 103 chain 17798 chr5 181538259 + 69091977 69092527 MER41B 635 + 0 635 58897 101 302 385 106 0 4 27 2 0 12 chain 28893 chr5 181538259 + 69162154 69162526 L1PA6 6164 + 5790 6161 43493 36 0 1 176 20 18 140 chain 2718 chr5 181538259 + 69187201 69187306 MER5A 189 + 2 145 102196 16 26 27 26 23 60 14 chain 25530 chr5 181538259 + 69197530 69197812 L1PA4 6152 + 5869 6151 48438 282 chain 57506 chr5 181538259 + 69220507 69221191 SVA_A 1864 + 1164 1854 27104 80 3 0 36 38 47 244 0 2 180 2 0 101 chain 34030 chr5 181538259 + 69305493 69305904 LTR3 431 + 6 422 38687 42 0 1 213 0 3 64 0 1 92 chain 126779 chr5 181538259 + 69308657 69310215 THE1A-int 1579 + 0 1568 14440 870 0 1 483 12 21 193 chain 5651 chr5 181538259 + 69316819 69316890 MLT1D 503 + 405 476 82556 71 chain 12277 chr5 181538259 + 69342906 69343041 L1PA7 6471 + 6332 6467 66320 135 chain 4770 chr5 181538259 + 69405690 69405746 L1MA8 2339 + 1748 1804 86850 56 chain 91171 chr5 181538259 + 69421850 69422914 MER11C 1089 + 0 1073 19473 225 0 5 356 12 13 176 0 1 9 0 1 140 1 2 145 chain 31556 chr5 181538259 + 69425055 69425401 L1PA2 6032 + 5680 6026 40699 346 chain 65747 chr5 181538259 + 69466400 69467210 LTR12 884 + 7 884 25016 70 0 66 58 0 2 174 2 0 159 0 2 171 1 0 175 chain 117212 chr5 181538259 + 69470600 69472045 L1PA8 5853 + 4425 5853 16019 528 0 1 56 2 0 146 11 0 62 2 0 153 0 3 153 0 1 36 7 6 38 2 0 71 1 0 8 2 1 56 1 0 16 1 0 93 chain 25079 chr5 181538259 + 69497884 69498146 AluYa5 310 + 34 296 49153 262 chain 16426 chr5 181538259 + 69564387 69564620 L1PA16 3655 + 2981 3200 60482 58 18 5 8 1 0 148 chain 8020 chr5 181538259 + 69575717 69575810 Tigger1 2417 + 871 964 74836 93 chain 106438 chr5 181538259 + 69672636 69673795 L1PA3long 6157 + 4567 5726 17501 1159 chain 118693 chr5 181538259 + 69684602 69685913 L1PA3long 6157 + 4097 5408 15773 1311 chain 115829 chr5 181538259 + 69732145 69733669 L1PA8A 6298 + 4780 6289 16273 144 14 18 77 0 1 57 0 1 21 5 7 160 3 0 61 0 1 39 21 1 121 2 1 81 1 2 428 1 0 288 chain 28353 chr5 181538259 + 69736707 69737306 L1PB1 5432 + 4922 5404 44338 32 1 4 115 4 0 6 8 16 8 73 0 13 21 0 22 1 0 8 1 0 12 5 1 8 2 0 53 3 2 14 1 0 45 1 0 15 24 12 19 7 4 15 2 0 24 1 0 21 1 0 13 chain 25143 chr5 181538259 + 69753639 69753933 L1PA5 6144 + 5844 6138 49047 294 chain 24818 chr5 181538259 + 69814001 69814434 L1PA15 4387 + 3898 4326 49561 35 1 0 167 6 5 15 41 40 25 1 0 22 4 0 10 1 0 50 10 16 31 3 1 11 chain 201936 chr5 181538259 + 69860068 69862455 L1PA6 6164 + 3754 6162 9640 898 0 5 16 1 0 255 0 9 44 0 1 337 1 5 697 1 2 128 0 2 9 chain 38902 chr5 181538259 + 69870157 69870589 L1PA3long 6157 + 5725 6157 35427 432 chain 37805 chr5 181538259 + 69881833 69882254 L1PA3long 6157 + 5725 6145 36203 415 1 0 5 chain 54876 chr5 181538259 + 70083356 70083964 L1PA3long 6157 + 5551 6157 27917 601 2 0 5 chain 10806 chr5 181538259 + 70088283 70088419 MSTA-int 1630 + 0 136 68847 136 chain 4496 chr5 181538259 + 70092855 70092909 LTR41 747 + 679 733 88352 54 chain 26695 chr5 181538259 + 70197549 70197849 L1PA3long 6157 + 5857 6157 46694 300 chain 106316 chr5 181538259 + 70252377 70253536 L1PA3long 6157 + 4567 5726 17522 1159 chain 118796 chr5 181538259 + 70264341 70265652 L1PA3long 6157 + 4097 5408 15747 1311 chain 4241 chr5 181538259 + 70306096 70306290 MER2 342 + 222 320 89868 10 75 0 46 44 23 19 chain 115951 chr5 181538259 + 70311874 70313398 L1PA8A 6298 + 4780 6289 16246 144 14 18 77 0 1 57 0 1 21 5 7 160 3 0 61 0 1 39 21 1 121 2 1 81 1 2 428 1 0 288 chain 28221 chr5 181538259 + 70316436 70317059 L1PB1 5432 + 4922 5404 44532 32 1 4 115 4 0 6 136 29 6 3 0 20 1 0 13 1 0 11 5 1 8 2 0 53 3 2 14 1 0 45 1 0 15 24 12 19 7 4 15 2 0 24 1 0 21 1 0 13 chain 17271 chr5 181538259 + 70317298 70317478 AluYa5 310 + 130 310 59493 180 chain 25040 chr5 181538259 + 70333581 70333879 L1PA5 6144 + 5844 6142 49212 298 chain 16517 chr5 181538259 + 70419534 70419768 L1PA16 3655 + 2980 3200 60345 59 18 5 8 1 0 148 chain 8020 chr5 181538259 + 70430860 70430953 Tigger1 2417 + 871 964 74835 93 chain 96553 chr5 181538259 + 70526638 70528183 THE1B-int 1605 + 13 1599 18708 246 0 1 14 0 6 19 70 9 83 5 69 30 17 17 29 9 16 109 15 16 17 7 13 120 11 12 38 95 80 193 0 14 78 0 6 58 0 5 88 6 7 113 0 5 75 chain 105969 chr5 181538259 + 70548745 70549904 L1PA3long 6157 + 4567 5726 17569 1159 chain 113446 chr5 181538259 + 70607459 70608983 L1PA8A 6298 + 4780 6289 16617 144 14 18 77 0 1 57 0 1 21 5 7 163 3 0 58 0 1 39 21 1 121 2 1 81 1 2 289 23 23 121 1 0 283 chain 28353 chr5 181538259 + 70612021 70612620 L1PB1 5432 + 4922 5404 44337 32 1 4 115 4 0 6 8 16 8 73 0 13 21 0 20 1 0 10 1 0 12 5 1 8 2 0 53 3 2 14 1 0 45 1 0 15 24 12 19 7 4 15 2 0 24 1 0 21 1 0 13 chain 24890 chr5 181538259 + 70628951 70629245 L1PA5 6144 + 5844 6138 49455 294 chain 31056 chr5 181538259 + 70650589 70651008 L1PA8 5853 + 5442 5853 41088 16 1 0 106 1 0 43 3 1 71 2 1 13 1 0 47 2 1 19 2 1 92 chain 64779 chr5 181538259 + 70661122 70661871 L1PA6 6164 + 5404 6153 25241 749 chain 25566 chr5 181538259 + 70688894 70689335 L1PA15 4387 + 3898 4326 48375 35 1 0 167 6 5 15 41 40 25 1 0 22 4 0 10 1 0 50 6 3 12 0 1 31 3 1 11 chain 201936 chr5 181538259 + 70735216 70737603 L1PA6 6164 + 3754 6162 9639 898 0 5 16 1 0 255 0 9 44 0 1 337 1 5 697 1 2 128 0 2 9 chain 66145 chr5 181538259 + 70745776 70746507 L1PA3long 6157 + 5426 6157 24922 731 chain 37805 chr5 181538259 + 70757715 70758136 L1PA3long 6157 + 5725 6145 36202 415 1 0 5 chain 55258 chr5 181538259 + 70958810 70959418 L1PA3long 6157 + 5551 6157 27792 601 2 0 5 chain 13958 chr5 181538259 + 70963546 70963727 MSTA 426 + 230 416 63656 135 1 6 45 chain 10806 chr5 181538259 + 70963737 70963873 MSTA-int 1630 + 0 136 68846 136 chain 4496 chr5 181538259 + 70968300 70968354 LTR41 747 + 679 733 88351 54 chain 14413 chr5 181538259 + 71091500 71091730 Tigger3b 1229 + 648 925 63015 18 0 5 23 0 8 7 8 27 8 0 4 22 8 7 21 0 2 13 0 10 102 chain 13958 chr5 181538259 + 71096319 71096500 MSTA 426 + 230 416 63655 135 1 6 45 chain 4496 chr5 181538259 + 71101073 71101127 LTR41 747 + 679 733 88350 54 chain 26695 chr5 181538259 + 71197940 71198240 L1PA3long 6157 + 5857 6157 46693 300 chain 98604 chr5 181538259 + 71212576 71214121 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102 17 2 1 47 29 26 18 5 0 31 chain 33515 chr5 181538259 + 71577949 71578401 LTR3A 482 + 26 482 39079 95 0 2 37 0 1 193 0 1 34 0 1 8 6 5 17 19 18 4 0 1 39 chain 399510 chr5 181538259 + 71684658 71690046 L1PB1 5432 + 33 5424 5162 13 17 0 7 4 21 192 12 13 120 2 0 7 0 2 73 1 2 320 0 3 441 0 4 51 0 1 86 16 8 236 0 1 99 3 14 347 0 1 399 1 0 59 0 1 206 0 1 22 1 2 101 0 3 137 4 5 117 1 0 52 0 6 279 2 3 5 1 0 319 9 8 26 0 1 50 0 1 36 0 3 19 1 0 97 0 1 157 1 0 64 1 0 206 0 1 4 1 0 75 0 1 45 1 5 9 0 1 159 79 60 56 0 2 36 13 1 167 1 30 14 1 0 10 5 1 9 2 0 53 2 1 16 1 0 43 1 0 16 13 1 30 9 6 13 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 154772 chr5 181538259 + 71760573 71762282 L1PA4 6152 + 3073 4782 12068 1709 chain 351563 chr5 181538259 + 71789876 71800119 L1PA7 6471 + 75 6470 5896 197 5 6 403 39 40 104 0 29 33 0 4 307 7 4 6 0 3 384 0 1 163 3 5 755 0 2 120 42 1 66 0 3 99 5707 1851 13 0 2 84 0 1 841 0 4 15 1 0 89 12 11 598 3 4 147 chain 280322 chr5 181538259 + 71851115 71854174 L1PA2 6032 + 2972 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9768 chr5 181538259 + 73004759 73004926 MER44A 345 + 78 264 70892 11 0 5 6 0 6 26 5 4 12 9 0 11 0 19 5 1 0 81 chain 14546 chr5 181538259 + 73043922 73044236 MSTA 426 + 26 389 62843 8 0 3 5 3 0 41 40 65 20 0 6 32 4 0 6 2 0 5 1 7 12 18 16 41 4 24 72 chain 538352 chr5 181538259 + 73206766 73213206 L1PA7 6471 + 0 6461 1436 129 17 13 316 0 1 26 2 1 221 8 10 140 1 0 495 5 4 199 0 1 478 0 7 96 1 0 294 1 2 206 0 2 60 2 1 25 1 2 347 6 12 136 1 2 1442 0 4 311 0 2 636 1 0 50 0 5 27 5 0 256 2 0 5 0 2 350 1 2 111 7 9 23 chain 22924 chr5 181538259 + 73287386 73287725 THE1C 375 + 0 336 52480 69 10 11 105 33 29 122 chain 35705 chr5 181538259 + 73323650 73324267 L1MA3 4352 + 3761 4352 37600 8 0 1 20 0 10 37 0 1 12 0 1 28 0 10 15 0 1 25 7 10 16 5 1 136 62 26 117 4 0 22 2 0 24 1 0 6 1 0 29 1 0 11 6 2 22 chain 15564 chr5 181538259 + 73390556 73390735 L1PA5 6144 + 5962 6144 61571 166 2 5 11 chain 4160 chr5 181538259 + 73397884 73398002 MLT2F 649 + 524 643 90390 42 53 54 23 chain 20810 chr5 181538259 + 73403167 73403395 L1PA3long 6157 + 5553 5781 55350 228 chain 24879 chr5 181538259 + 73404932 73405235 AluY 311 + 0 310 49476 8 0 6 118 0 1 20 1 2 17 2 1 137 chain 28945 chr5 181538259 + 73439941 73440247 AluYg6 310 + 0 306 43413 306 chain 4801 chr5 181538259 + 73531825 73531881 MER41G 495 + 430 486 86699 56 chain 26621 chr5 181538259 + 73765870 73766179 AluYk11 308 + 0 307 46800 234 3 1 72 chain 120020 chr5 181538259 + 73767240 73768787 THE1B-int 1605 + 0 1600 15535 264 0 9 153 0 25 228 0 3 29 4 6 175 0 6 37 1 0 350 1 0 274 12 22 19 chain 321009 chr5 181538259 + 74216779 74220596 L1PA6 6164 + 2357 6160 6386 828 1 0 36 25 3 40 0 4 272 1 0 96 0 1 317 0 1 415 0 5 78 2 0 190 1 0 475 0 1 199 3 1 79 1 0 249 0 1 322 4 6 165 0 1 18 chain 5266 chr5 181538259 + 74271692 74271763 MADE1 96 + 6 96 84356 21 0 18 13 0 1 37 chain 3099 chr5 181538259 + 74279864 74279906 MER53 195 - 38 79 98794 32 1 0 9 chain 18903 chr5 181538259 + 74313278 74313560 MER4D1 891 + 634 883 57634 26 29 0 4 1 0 60 1 0 54 1 0 43 1 0 62 chain 8486 chr5 181538259 + 74330128 74330228 MER30 238 + 138 238 73703 100 chain 5272 chr5 181538259 + 74395642 74395705 MER5A 189 + 51 114 84329 63 chain 190162 chr5 181538259 + 74436094 74438373 L1PA7 6471 + 4185 6469 10105 537 0 2 35 1 0 4 0 1 70 0 1 80 1 0 116 0 1 425 0 1 156 0 3 83 1 4 262 1 3 490 7 0 10 chain 19896 chr5 181538259 + 74489380 74489720 Tigger3a 397 + 0 395 56540 33 62 106 194 10 21 41 chain 24811 chr5 181538259 + 74522863 74523216 THE1B 368 + 0 368 49575 44 6 21 44 14 15 48 2 1 195 chain 124579 chr5 181538259 + 74523216 74524799 THE1B-int 1605 + 0 1605 14767 288 10 8 134 0 25 307 7 8 377 7 2 49 1 2 132 0 1 4 0 1 267 chain 4175 chr5 181538259 + 74524799 74524843 THE1B 368 + 0 44 90298 44 chain 14377 chr5 181538259 + 74524949 74525141 THE1B 368 + 172 367 63069 16 4 6 153 0 1 19 chain 41114 chr5 181538259 + 74561839 74562597 L1PB1 5432 + 4659 5408 33903 24 1 3 35 0 3 99 16 15 25 0 1 72 0 18 128 0 3 7 36 34 8 1 0 10 1 0 14 4 0 10 2 0 52 18 16 10 2 0 35 36 23 19 12 9 13 2 0 25 1 0 21 1 0 13 1 0 4 chain 24141 chr5 181538259 + 74596103 74596415 AluY 311 + 0 311 50586 29 4 0 103 11 12 132 0 2 33 chain 4124 chr5 181538259 + 74680624 74680672 MLT1F1 559 + 39 87 90627 48 chain 553428 chr5 181538259 + 74706307 74712440 L1PA3long 6157 + 0 6157 520 708 0 7 474 0 3 338 6 0 24 3 8 804 1 0 893 0 4 252 0 2 845 0 4 891 1 3 286 0 3 458 0 1 149 chain 4304 chr5 181538259 + 74731422 74731480 MER77 626 + 315 372 89472 23 1 0 34 chain 12766 chr5 181538259 + 74745434 74745597 MER2 342 + 157 320 65492 163 chain 176504 chr5 181538259 + 74753611 74756256 L1PBa 3878 + 918 3573 10750 40 30 29 254 1 3 18 0 1 101 0 1 249 9 0 24 11 19 97 0 4 65 0 1 234 0 4 88 281 0 313 0 261 77 0 5 184 0 2 18 8 12 26 0 2 57 34 44 71 4 0 351 chain 5364 chr5 181538259 + 74756310 74756388 L1PB1 5432 + 4739 4825 83886 54 1 9 23 chain 7991 chr5 181538259 + 74779308 74779412 U6 107 + 0 105 74903 79 0 2 16 1 0 8 chain 429501 chr5 181538259 + 74786315 74792199 HERVL-int 5654 + 3 5654 4754 167 0 2 97 0 2 114 16 28 233 3 4 52 16 141 39 3 4 4 1 0 309 0 1 248 4 8 68 1 2 16 3 0 178 5 1 9 7 11 51 0 12 237 1 0 90 1 0 125 316 0 65 0 6 65 0 4 566 9 10 215 116 0 373 1 0 154 0 10 100 5 7 30 0 4 5 3 0 41 0 4 48 1 3 30 1 0 1229 14 13 241 0 1 4 1 9 26 8 16 119 chain 15079 chr5 181538259 + 74793346 74793678 L1PB1 5432 + 5107 5404 62173 7 5 0 24 2 1 7 1 0 12 17 11 51 2 1 15 1 0 37 7 6 17 24 12 18 3 1 5 1 0 16 2 0 22 1 0 22 1 0 12 chain 42986 chr5 181538259 + 74815566 74816098 MER41A 554 + 0 554 32780 410 0 4 54 0 5 51 0 13 17 chain 42625 chr5 181538259 + 74869419 74869928 MER9a3 513 + 0 513 32986 19 1 0 204 0 3 32 1 0 28 0 1 158 0 2 66 chain 36167 chr5 181538259 + 74970968 74971430 LTR2 463 + 0 463 37297 360 31 32 71 chain 3442 chr5 181538259 + 75012776 75012869 MLT1C 463 + 266 386 95715 33 40 67 20 chain 144744 chr5 181538259 + 75013497 75015710 L1PA11 4918 + 2675 4567 12710 45 0 3 39 0 1 194 0 1 35 312 7 182 2 1 1142 1 0 62 8 7 13 2 0 68 2 0 12 2 1 20 43 31 15 1 0 13 chain 25690 chr5 181538259 + 75062106 75062479 MSTA 426 + 0 387 48187 103 5 10 41 0 6 47 29 33 70 1 0 77 chain 168113 chr5 181538259 + 75114571 75116412 L1PA3long 6157 + 4309 6150 11210 1841 chain 20718 chr5 181538259 + 75128170 75128412 L1PA7 6471 + 6222 6470 55472 221 0 6 21 chain 518736 chr5 181538259 + 75129665 75137172 L1PA5 6144 + 0 6143 2323 135 10 24 145 1379 0 865 9 0 197 0 1 158 0 1 311 0 1 6 0 3 347 0 2 117 10 8 117 2 0 598 0 1 242 0 1 382 10 6 52 0 1 210 0 1 298 0 1 776 0 1 21 0 3 945 0 1 165 chain 104231 chr5 181538259 + 75144479 75145748 L1PA7 6471 + 5196 6469 17795 93 9 7 298 0 6 21 1 0 77 0 2 394 0 1 177 1 7 42 9 8 132 7 0 8 chain 125911 chr5 181538259 + 75161036 75162622 THE1B-int 1605 + 0 1605 14573 432 2 27 229 30 24 893 chain 250842 chr5 181538259 + 75172405 75175387 L1PA6 6164 + 3168 6161 8207 17 5 6 307 0 1 510 1 4 101 0 2 105 0 1 277 0 2 125 0 2 469 1 2 54 0 1 51 7 0 109 0 5 159 0 1 527 12 10 145 chain 545900 chr5 181538259 + 75175748 75181899 L1PA4 6152 + 1 6152 975 3183 0 1 705 0 2 169 1 0 4 0 1 907 0 1 125 0 1 201 2 0 516 0 1 316 1 0 13 3 0 5 chain 512123 chr5 181538259 + 75247847 75260472 L1PA7 6471 + 0 6469 2661 306 0 1 97 1 2 109 0 1 124 9 10 18 0 16 15 17 18 24 0 1 39 2 1 204 1 0 4 0 1 247 0 4 136 1 2 312 0 1 59 0 1 260 0 1 12 1 0 8 6 7 107 6170 0 103 0 1 15 7 4 224 0 2 65 4 5 64 2 1 35 5 1 293 0 1 390 1 2 5 1 0 185 15 0 691 0 1 21 1 2 244 0 3 5 11 8 119 1 0 707 1 0 11 0 2 139 0 1 123 1 0 432 0 1 83 4 3 189 2 1 126 0 2 11 chain 181218 chr5 181538259 + 75269507 75272165 SVA_D 2077 + 7 2070 10540 12 5 6 22 6 0 715 40 0 158 1 0 27 11 0 87 1 4 54 0 1 94 541 0 201 0 1 4 9 8 365 1 0 304 chain 17189 chr5 181538259 + 75270740 75270937 SVA_D 2077 + 1314 1559 47840 54 2 51 123 1 0 17 chain 15017 chr5 181538259 + 75270937 75271127 SVA_D 2077 + 1384 1559 52130 110 14 0 48 1 0 17 chain 8639 chr5 181538259 + 75271141 75271281 SVA_D 2077 + 1221 1363 55450 22 0 1 102 0 1 16 chain 30610 chr5 181538259 + 75285192 75285908 MER4A1 472 + 0 453 41462 15 0 2 5 1 2 7 1 0 98 288 0 93 10 31 147 1 3 50 chain 180577 chr5 181538259 + 75296720 75299182 MER4-int 2692 + 112 2692 10562 6 0 2 14 1 12 106 0 3 163 0 4 130 19 36 136 10 2 6 0 5 69 1 2 83 6 0 28 0 1 143 8 10 100 0 1 84 5 7 87 2 1 159 6 1 192 0 5 70 1 0 47 0 1 62 0 2 47 7 8 16 0 77 230 2 0 5 0 1 4 0 3 173 15 16 6 0 1 197 1 2 8 1 0 6 chain 32816 chr5 181538259 + 75299191 75299636 MER4A1 472 + 0 472 39655 15 4 7 203 1 23 135 19 21 68 chain 38344 chr5 181538259 + 75304454 75304944 LTR17 781 + 255 773 35817 72 1 0 81 0 5 282 19 43 35 chain 48776 chr5 181538259 + 75318404 75318981 LTR66 600 + 0 600 30020 252 0 1 150 0 6 51 0 16 124 chain 127751 chr5 181538259 + 75333500 75335010 LTR12C 1709 + 2 1709 14317 102 9 4 702 0 200 101 1 0 113 0 4 408 1 0 73 chain 31313 chr5 181538259 + 75357569 75357998 L1PA8 5853 + 5422 5847 40881 100 1 0 88 14 12 58 1 0 13 2 0 6 0 1 8 0 3 32 1 0 17 2 1 86 chain 45508 chr5 181538259 + 75407690 75408509 PABL_A 660 + 5 653 31303 18 7 21 40 0 9 85 221 0 159 8 32 204 0 3 77 chain 92276 chr5 181538259 + 75454290 75455533 HSMAR1 1287 + 25 1279 19302 91 7 10 33 0 5 37 9 0 130 0 1 187 7 6 42 4 3 281 0 12 49 23 25 310 6 5 27 chain 35080 chr5 181538259 + 75473940 75474407 LTR2B 499 + 5 499 37967 7 0 1 16 1 11 34 3 0 37 0 7 7 6 18 165 0 1 8 1 0 182 chain 14382 chr5 181538259 + 75488931 75489090 L1PA7 6471 + 4992 5154 63063 129 0 3 30 chain 72259 chr5 181538259 + 75489091 75489948 L1PA7 6471 + 5154 6043 23471 468 0 10 66 0 2 222 0 20 101 chain 25109 chr5 181538259 + 75489949 75490253 L1PA7 6471 + 6063 6367 49101 304 chain 110222 chr5 181538259 + 75497797 75499318 THE1C-int 1605 + 0 1605 17052 13 3 2 88 1 2 5 0 54 241 17 12 28 5 12 126 0 1 96 1 0 72 6 0 28 11 1 236 28 25 135 1 0 120 8 56 252 chain 558766 chr5 181538259 + 75642235 75648280 L1PA2 6032 + 2 6032 207 6016 15 0 14 chain 541528 chr5 181538259 + 75695700 75701728 L1PA3long 6157 + 0 6155 1235 153 1 2 527 0 3 96 0 128 251 0 5 413 1 0 360 0 1 178 13 1 687 0 1 1047 0 1 2301 chain 15158 chr5 181538259 + 75702109 75702328 L1PA8 5853 + 5638 5853 62082 44 1 0 11 9 8 39 2 1 19 2 1 92 chain 22123 chr5 181538259 + 75731128 75731361 AluYa5 310 + 70 303 53665 233 chain 223817 chr5 181538259 + 75781214 75783979 L1PA7 6471 + 3686 6461 8935 214 3 2 106 0 1 657 0 12 38 0 2 95 0 4 532 16 0 264 1 8 77 0 2 608 7 6 147 chain 11595 chr5 181538259 + 75789614 75789802 L1MA3 4352 + 4119 4301 67578 84 0 2 31 5 1 22 2 0 19 12 10 13 chain 31603 chr5 181538259 + 75802736 75803172 MLT2A1 477 + 0 477 40663 142 0 1 25 1 5 33 0 1 113 10 9 54 4 40 54 chain 9502 chr5 181538259 + 75803172 75803279 L1PREC2 3366 + 2009 2116 71468 107 chain 259548 chr5 181538259 + 75819073 75822763 L1PA7 6471 + 3247 6457 7986 145 519 0 157 0 4 16 4 9 469 2 1 246 4 0 54 0 3 18 0 1 115 0 11 88 0 8 346 0 1 10 4 0 141 0 21 75 0 1 139 12 0 212 0 2 8 12 10 67 0 5 827 chain 44575 chr5 181538259 + 75819226 75819720 SVA_D 2077 + 1577 2072 31795 5 0 1 49 0 1 133 1 0 306 chain 21159 chr5 181538259 + 75852076 75852318 L1PA7 6471 + 6222 6464 54934 242 chain 10539 chr5 181538259 + 75855482 75855645 Tigger1 2417 + 66 231 69339 24 22 21 73 0 3 44 chain 48165 chr5 181538259 + 75859522 75860102 LTR14C 587 + 0 580 30230 223 6 0 7 0 6 56 1 0 79 0 1 208 chain 53714 chr5 181538259 + 75861033 75861872 L1PA16 3655 + 2800 3619 28315 122 1 0 19 9 3 36 0 2 21 0 7 7 48 49 135 1 0 89 2 0 105 2 8 8 0 1 167 3 0 13 37 13 14 chain 63652 chr5 181538259 + 75869644 75870877 L1M1 2793 + 543 1659 25490 11 2 0 9 179 100 37 36 26 12 13 10 11 31 25 18 1 0 29 2 0 8 1 0 54 24 21 89 5 4 20 0 1 10 2 0 93 0 1 50 7 6 83 7 0 244 1 0 144 chain 132285 chr5 181538259 + 75873704 75875630 L1PA14 3548 + 1569 3448 13797 98 13 18 77 2 1 4 0 1 241 0 1 163 3 1 115 0 1 245 8 5 56 4 5 88 1 0 161 0 1 54 38 14 19 3 1 14 2 0 47 11 7 109 6 2 13 2 0 6 1 0 84 1 0 107 20 15 30 10 8 12 7 5 16 1 0 34 chain 144480 chr5 181538259 + 75882239 75883841 L1PA3long 6157 + 4484 6151 12733 125 0 1 430 2 62 656 0 3 62 0 1 327 chain 58338 chr5 181538259 + 75923165 75924044 L1PB2 3958 + 2967 3838 26854 119 4 0 44 15 16 96 0 1 43 2 0 5 1 4 11 3 1 56 1 0 6 1 3 67 2 0 12 2 0 87 0 3 50 1 0 27 1 0 63 1 0 43 0 1 15 15 13 22 1 0 63 chain 194242 chr5 181538259 + 75954426 75956554 L1PA3long 6157 + 4027 6155 9914 1940 0 1 4 1 0 183 chain 7136 chr5 181538259 + 75958253 75958357 MLT2B4 540 + 0 104 77148 20 0 1 49 8 7 27 chain 515819 chr5 181538259 + 75967208 75973064 L1PA4 6152 + 11 5879 2478 37 0 12 759 2 1 190 9 5 513 2 3 669 0 2 173 0 1 2739 1 0 238 0 1 458 0 1 66 chain 21158 chr5 181538259 + 75981994 75982222 L1PA2 6032 + 5783 6011 54935 228 chain 3670 chr5 181538259 + 75988719 75988787 MER34B 572 + 8 79 93833 27 3 0 5 5 11 28 chain 7648 chr5 181538259 + 75998707 75998796 MLT2B1 522 + 366 455 75752 89 chain 29900 chr5 181538259 + 76002907 76003288 THE1C 375 + 0 375 42134 50 0 1 251 7 0 73 chain 2671 chr5 181538259 + 76047693 76047723 L1MA8 2339 + 2163 2193 102595 30 chain 49660 chr5 181538259 + 76066048 76066610 L1PA5 6144 + 5584 6139 29696 406 7 0 149 chain 13510 chr5 181538259 + 76073549 76073878 L1PB1 5432 + 5114 5412 64301 24 1 0 8 1 0 12 18 12 50 27 25 36 1 0 8 20 9 10 1 0 18 26 21 23 1 0 22 1 0 8 0 1 5 2 0 6 chain 98561 chr5 181538259 + 76122560 76123680 L1PA3long 6157 + 2830 3953 18473 334 0 4 138 7 0 620 0 6 21 chain 3569 chr5 181538259 + 76149015 76149060 MER53 195 + 114 159 94668 45 chain 129837 chr5 181538259 + 76171103 76173064 SVA_F 1814 + 335 1812 14064 366 0 40 139 2 0 34 49 0 34 353 14 208 4 0 17 130 0 625 chain 2412 chr5 181538259 + 76171646 76171676 SVA_F 1814 + 1107 1138 94964 20 0 1 10 chain 12557 chr5 181538259 + 76171730 76171952 SVA_F 1814 + 966 1138 44120 125 50 0 47 chain 2296 chr5 181538259 + 76171855 76171880 SVA_F 1814 + 1267 1291 67934 7 1 0 17 chain 2573 chr5 181538259 + 76171952 76171979 SVA_F 1814 + 1187 1214 77110 27 chain 8454 chr5 181538259 + 76171985 76172075 SVA_F 1814 + 1170 1260 73789 90 chain 6670 chr5 181538259 + 76172310 76172388 SVA_F 1814 + 1011 1089 61907 78 chain 4349 chr5 181538259 + 76172388 76172438 SVA_F 1814 + 962 1011 64332 39 1 0 10 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76477438 76478489 Tigger3b 1229 + 58 858 37332 33 8 44 33 0 4 79 2 6 27 13 18 25 3 0 6 48 53 39 0 16 57 14 15 58 3 0 7 1 3 39 3 4 18 51 69 57 348 11 79 chain 15813 chr5 181538259 + 76621901 76622093 MER107 203 + 0 203 61269 160 1 12 31 chain 37332 chr5 181538259 + 76711488 76711955 MER9a3 513 + 20 513 36529 159 0 1 43 0 3 86 1 21 4 0 1 95 1 2 78 chain 25373 chr5 181538259 + 76726250 76726551 AluYk4 311 + 1 296 48662 232 6 0 63 chain 18143 chr5 181538259 + 76740913 76741202 LTR23 429 + 131 414 58521 112 0 1 28 23 25 41 17 8 68 chain 18532 chr5 181538259 + 76741246 76741588 L1PA15 4387 + 4046 4366 58070 28 3 0 30 1 0 27 1 0 54 1 0 16 12 8 8 1 0 47 9 6 42 33 26 17 1 0 11 chain 23377 chr5 181538259 + 76761168 76761841 THE1B 368 + 0 368 51803 44 1 16 47 0 1 64 323 2 25 4 0 77 17 21 71 chain 41203 chr5 181538259 + 76780825 76781350 MER41A 554 + 0 542 33840 88 0 5 119 6 19 83 1 0 228 chain 175551 chr5 181538259 + 76811568 76813693 SVA_D 2077 + 6 2076 10800 16 8 0 898 1 87 27 1 0 9 0 1 140 42 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chain 2930 chr5 181538259 + 77677400 77677437 L1MC1 2226 + 1291 1327 100579 24 1 0 12 chain 4026 chr5 181538259 + 77700741 77700785 L1PB1 5432 + 4135 4179 91261 44 chain 23673 chr5 181538259 + 77700785 77701128 L1PB1 5432 + 4180 4533 51322 146 7 9 18 10 13 114 13 18 35 chain 33466 chr5 181538259 + 77701128 77701595 L1PB1 5432 + 4534 5014 39120 92 3 0 97 0 3 36 5 4 82 1 0 32 7 20 53 6 8 53 chain 6127 chr5 181538259 + 77701597 77701671 L1PB1 5432 + 5020 5094 80626 74 chain 2102 chr5 181538259 + 77701830 77701862 L1PB1 5432 + 5108 5138 105786 6 1 0 11 1 0 13 chain 4042 chr5 181538259 + 77701892 77701952 L1PB1 5432 + 5162 5220 91142 6 2 0 52 chain 4731 chr5 181538259 + 77701954 77702011 L1PB1 5432 + 5221 5277 87076 15 1 0 41 chain 7074 chr5 181538259 + 77702056 77702180 L1PB1 5432 + 5308 5423 77354 19 8 5 14 2 0 27 1 0 18 1 0 13 1 0 14 1 0 5 chain 22512 chr5 181538259 + 77703799 77704165 THE1D 372 + 0 372 53107 29 0 1 23 9 10 46 9 15 27 34 28 11 0 4 178 chain 33400 chr5 181538259 + 77758159 77758616 LTR2B 499 + 9 499 39175 5 1 0 57 1 0 25 8 27 59 11 12 4 1 0 77 0 16 208 chain 101489 chr5 181538259 + 77760434 77761651 SVA_A 1864 + 18 1863 18130 7 4 0 475 2 190 37 2 0 36 1 0 33 3 0 40 40 491 252 1 0 284 chain 5163 chr5 181538259 + 77770466 77770540 MER81 114 + 21 94 84847 34 5 4 35 chain 8404 chr5 181538259 + 77772365 77772474 L1PA8 5853 + 5745 5853 73891 15 1 0 93 chain 49496 chr5 181538259 + 77774856 77775573 MER4A 717 + 0 717 29767 13 1 0 110 13 0 240 0 1 110 0 4 16 4 1 46 19 21 80 9 15 16 11 15 29 chain 29828 chr5 181538259 + 77780316 77780755 MER4B 649 + 235 641 42207 182 11 9 93 35 5 110 1 0 7 chain 43033 chr5 181538259 + 77809925 77810486 LTR12 884 + 0 884 32754 25 1 0 29 0 41 240 2 49 196 0 236 68 chain 7680 chr5 181538259 + 77813702 77813791 LTR12F 595 + 490 579 75679 89 chain 18766 chr5 181538259 + 78046199 78046474 MER1B 344 + 59 331 57825 21 10 8 132 4 0 47 11 14 50 chain 264787 chr5 181538259 + 78065858 78069817 L1PA10 4194 + 175 4150 7830 13 2 0 12 3 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78300085 THE1D-int 1627 + 0 235 56823 36 4 3 196 chain 21863 chr5 181538259 + 78301624 78302015 THE1D 372 + 0 372 54024 52 23 14 100 6 10 13 37 19 9 2 1 20 1 7 95 1 0 32 chain 16727 chr5 181538259 + 78364803 78365010 L1PA5 6144 + 5903 6120 60123 97 7 13 75 0 4 28 chain 16535 chr5 181538259 + 78376035 78376251 MER11A 1151 + 930 1151 60326 152 0 1 16 1 2 5 0 3 42 chain 9482 chr5 181538259 + 78529559 78529659 AluYb8 318 + 205 305 71519 100 chain 2792 chr5 181538259 + 78530941 78530989 MLT1J 494 + 0 47 101697 16 7 6 25 chain 3560 chr5 181538259 + 78538105 78538148 MER5A1 166 + 95 138 94755 43 chain 507271 chr5 181538259 + 78681963 78687707 L1PA5 6144 + 3 5772 2877 220 0 1 792 2 1 60 0 1 861 2 1 374 0 1 848 0 1 6 0 1 549 0 1 620 0 4 102 0 3 1075 0 14 233 chain 20671 chr5 181538259 + 78690010 78690376 THE1D 372 + 0 372 55536 38 3 4 89 1 0 34 77 84 91 1 0 32 chain 27967 chr5 181538259 + 78696049 78696415 THE1B 368 + 0 368 44924 15 2 0 22 0 5 130 3 2 194 chain 547159 chr5 181538259 + 78709758 78715893 L1PA4 6152 + 1 6151 913 213 0 1 224 0 2 128 0 4 643 1 4 1563 0 1 1156 0 1 272 0 1 993 0 1 401 0 1 398 0 1 122 1 0 20 chain 291099 chr5 181538259 + 78860356 78863768 L1PA6 6164 + 2746 6162 7097 315 1 0 122 1 2 280 0 1 40 1 0 799 2 0 374 0 1 163 0 14 204 3 0 130 1 0 207 1 0 758 4 0 6 chain 553697 chr5 181538259 + 78866811 78872828 L1PA2 6032 + 7 6032 504 834 0 6 4319 0 1 706 1 2 157 chain 84575 chr5 181538259 + 78909365 78910363 LTR5B 1012 + 0 1012 20702 54 1 0 80 0 14 265 1 0 590 0 2 7 chain 151664 chr5 181538259 + 78946232 78948403 L1MA3 4352 + 2219 4314 12246 42 0 1 50 2 1 105 18 1 93 22 0 74 2 1 25 0 1 765 2 1 8 2 0 9 6 7 512 7 8 56 0 2 112 42 15 5 3 0 123 4 0 13 44 40 25 chain 24090 chr5 181538259 + 78959001 78959333 THE1C 375 + 0 336 50661 186 0 1 60 6 7 32 6 8 42 chain 8869 chr5 181538259 + 78959439 78959578 LTR24B 570 + 430 570 72836 57 24 25 58 chain 81164 chr5 181538259 + 79038801 79039702 L1PA3long 6157 + 5240 6142 21397 583 0 1 318 chain 53402 chr5 181538259 + 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81638262 L1PA3long 6157 + 5624 6156 30314 532 chain 192125 chr5 181538259 + 81658737 81661163 L1PA8 5853 + 3412 5844 10019 232 0 3 541 0 2 180 1 0 79 34 15 130 3 18 70 0 1 277 0 4 45 2 0 44 0 1 54 0 3 3 0 2 13 0 3 432 1 0 46 2 0 71 1 0 8 1 0 51 2 1 19 2 1 39 0 1 43 chain 21220 chr5 181538259 + 81669501 81669770 L1PA8A 6298 + 6029 6291 54859 161 8 1 100 chain 25342 chr5 181538259 + 81712362 81712628 AluYb8 318 + 43 309 48723 266 chain 99971 chr5 181538259 + 81823540 81824809 LTR12C 1709 + 0 1709 18301 508 7 14 44 11 13 140 0 118 91 0 207 89 0 4 212 0 1 22 43 13 39 0 131 63 chain 10699 chr5 181538259 + 81860227 81860356 MER85 139 + 0 139 69046 90 0 10 39 chain 118509 chr5 181538259 + 81890115 81891708 THE1D-int 1627 + 0 1622 15807 37 1 0 193 11 0 123 14 25 25 14 28 63 0 1 5 1 0 41 1 0 149 2 1 18 4 5 9 1 2 133 6 8 173 0 14 569 chain 81751 chr5 181538259 + 81900522 81901580 MER11C 1089 + 1 1063 21285 250 1 2 64 0 4 21 1 0 44 1 0 145 42 41 19 6 4 95 0 4 5 1 0 40 0 1 323 chain 74094 chr5 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27679 chr5 181538259 + 86312698 86313050 THE1A 353 + 0 353 45352 186 0 1 166 chain 122359 chr5 181538259 + 86313050 86314611 THE1A-int 1579 + 0 1574 15134 24 0 1 256 0 2 787 7 12 27 13 17 348 0 1 99 chain 26845 chr5 181538259 + 86314616 86314969 THE1A 353 + 0 353 46479 110 1 0 8 4 5 156 1 0 9 0 1 64 chain 61945 chr5 181538259 + 86339498 86340484 L1PA13 3608 + 2569 3541 25877 48 0 1 49 9 12 42 0 3 184 1 4 19 0 2 199 1 0 27 1 0 108 11 9 55 5 4 56 1 0 5 2 0 24 36 35 13 1 0 14 13 10 12 5 0 14 1 0 6 7 1 7 1 0 9 chain 45631 chr5 181538259 + 86379013 86379665 L1PB 1623 + 772 1399 31249 55 1 0 41 13 16 8 32 0 83 0 1 12 0 9 305 5 0 97 chain 5054 chr5 181538259 + 86400458 86400536 MADE1 96 + 3 96 85393 18 9 24 51 chain 2661 chr5 181538259 + 86406498 86406649 MER20 218 + 22 174 102658 12 22 20 20 71 75 12 1 0 13 chain 150126 chr5 181538259 + 86435022 86436671 L1PA3long 6157 + 4508 6157 12340 1649 chain 25857 chr5 181538259 + 86454740 86455098 MLT2A1 477 + 0 357 47931 147 27 24 8 0 1 24 0 1 152 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89 1 0 610 1 8 138 4 0 6 chain 4399 chr5 181538259 + 86999421 86999567 L1MA5A 2387 + 2254 2375 88894 41 67 45 22 4 1 12 chain 24197 chr5 181538259 + 87019117 87019392 AluYc3 301 + 1 277 50504 112 1 2 162 chain 91107 chr5 181538259 + 87058293 87059292 L1PA3long 6157 + 5158 6157 19485 999 chain 537574 chr5 181538259 + 87084428 87090563 L1PA5 6144 + 0 6144 1476 153 0 6 6 8 2 522 0 1 465 0 3 453 0 1 33 0 1 454 0 3 1780 3 0 661 1 0 84 1 0 669 0 4 690 7 8 145 chain 10256 chr5 181538259 + 87091937 87092048 L1PA2 6032 + 5920 6031 69886 111 chain 33270 chr5 181538259 + 87130242 87130712 L1PA16 3655 + 3090 3560 39287 29 1 0 85 6 5 50 4 8 23 7 5 265 chain 21939 chr5 181538259 + 87165466 87165757 AluSc 308 + 6 285 53920 103 2 1 15 12 1 159 chain 5567 chr5 181538259 + 87231850 87231928 MADE1 96 + 0 95 82953 44 5 22 29 chain 8560 chr5 181538259 + 87234943 87235125 L1PB1 5432 + 5257 5423 73541 24 1 0 15 2 0 8 1 0 9 25 19 14 2 0 24 1 0 20 2 1 13 1 0 14 1 0 5 chain 9780 chr5 181538259 + 87299006 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22 2 0 11 chain 11804 chr5 181538259 + 91083112 91083246 L1PA5 6144 + 5855 5989 67197 134 chain 13900 chr5 181538259 + 91083247 91083402 L1PA5 6144 + 5989 6144 63734 155 chain 82395 chr5 181538259 + 91084289 91085224 L1PA6 6164 + 5215 6150 21152 935 chain 109463 chr5 181538259 + 91198730 91200126 L1PA11 4918 + 3119 4508 17121 183 0 1 47 4 3 17 0 3 588 0 1 362 11 4 76 5 4 67 2 0 13 1 0 20 chain 5847 chr5 181538259 + 91267083 91267149 MER41B 635 + 481 547 81706 66 chain 65316 chr5 181538259 + 91274057 91274755 L1PA2 6032 + 5334 6032 25104 698 chain 36969 chr5 181538259 + 91420244 91420699 L1PA5 6144 + 5708 6142 36758 359 18 1 67 4 0 7 chain 21647 chr5 181538259 + 91448167 91448593 L1PB1 5432 + 5022 5427 54295 69 2 0 12 5 4 7 1 0 24 2 1 5 1 0 14 5 1 8 2 0 52 3 2 16 2 1 42 1 0 16 14 1 21 0 14 14 2 0 24 1 0 19 3 2 13 1 0 14 1 0 5 1 0 4 chain 11736 chr5 181538259 + 91460564 91460722 Tigger3a 397 + 139 308 67340 9 0 10 104 7 8 38 chain 205648 chr5 181538259 + 91460982 91464196 L1PA14 3548 + 538 3465 9515 36 0 1 4 1 0 28 15 16 83 1 4 6 0 1 564 0 7 28 1 5 55 265 0 95 46 44 29 7 3 52 5 4 47 15 1 238 3 15 628 5 4 147 9 7 24 10 11 63 1 2 148 3 1 14 2 0 47 2 0 5 20 22 87 4 0 17 2 0 6 1 0 84 1 0 111 14 9 38 4 2 9 1 0 8 1 0 16 1 0 41 6 0 10 chain 498601 chr5 181538259 + 91555392 91561253 L1PA5 6144 + 0 5865 3175 120 0 14 292 1 0 10 9 5 728 9 0 672 1 2 217 0 1 1588 3 1 504 16 8 131 0 1 47 0 4 107 8 0 169 0 1 121 1 13 483 0 1 65 0 1 559 chain 320291 chr5 181538259 + 91563985 91570667 L1PB1 5432 + 1052 5427 6403 51 0 12 59 0 3 58 1 0 16 1 0 123 2301 0 21 5 0 8 0 7 42 0 3 13 4 5 243 0 1 141 1 2 351 1 4 284 1 2 13 3 5 321 6 5 270 0 1 84 5 6 267 1 3 53 0 1 198 0 8 89 0 1 93 5 0 179 11 10 50 1 0 118 0 1 227 1 0 110 49 41 150 0 1 52 0 1 202 1 2 35 9 8 8 1 0 23 1 0 9 1 0 11 19 13 50 2 1 15 1 0 45 1 0 15 2 0 6 1 0 11 24 14 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 8 1 0 11 1 0 4 chain 67746 chr5 181538259 + 91619797 91620606 L1PA6 6164 + 5325 6140 24508 420 1 2 225 8 9 116 9 13 30 chain 79290 chr5 181538259 + 91657359 91658467 MER11A 1151 + 0 1151 21782 76 1 9 145 1 0 64 0 11 11 37 0 72 0 1 22 0 1 272 7 6 120 0 26 26 9 6 9 0 35 173 7 6 20 5 9 31 chain 8099 chr5 181538259 + 91696862 91696953 L1PB1 5432 + 4507 4598 74641 91 chain 50634 chr5 181538259 + 91696955 91697800 L1PB1 5432 + 4601 5418 29335 26 2 0 90 0 2 86 11 11 165 0 3 119 13 11 32 1 0 12 4 0 11 3 1 50 2 1 15 1 0 44 1 0 10 59 45 11 2 0 24 1 0 17 7 6 10 2 1 14 chain 6436 chr5 181538259 + 91716815 91716895 L1PB1 5432 + 4380 4460 79550 80 chain 7733 chr5 181538259 + 91716896 91717003 L1PB1 5432 + 4466 4576 75523 48 0 4 54 1 0 4 chain 45405 chr5 181538259 + 91717003 91717697 L1PB1 5432 + 4577 5275 31361 50 2 0 177 0 7 41 0 1 19 14 21 184 5 6 14 24 24 13 1 0 12 1 0 10 2 0 3 2 0 8 2 0 55 1 0 4 12 11 38 chain 6901 chr5 181538259 + 91717731 91717853 L1PB1 5432 + 5297 5411 77952 30 9 6 13 2 0 24 1 0 21 1 0 13 1 0 7 chain 34324 chr5 181538259 + 91744500 91744939 LTR7 482 + 0 469 38475 101 16 14 109 8 40 205 chain 542393 chr5 181538259 + 91762139 91768161 L1PA3long 6157 + 4 6155 1186 149 1 2 403 1 0 218 0 128 2171 1 2 3078 chain 15072 chr5 181538259 + 91861343 91861566 L1PA8 5853 + 5630 5848 62180 51 1 0 13 17 15 33 2 1 17 1 0 88 chain 105490 chr5 181538259 + 91917095 91918477 LTR12C 1709 + 0 1709 17619 86 0 3 79 4 1 126 0 1 165 6 8 58 0 1 76 9 6 40 0 278 143 0 47 106 11 4 227 1 0 130 0 10 23 8 7 84 chain 81900 chr5 181538259 + 91944289 91945259 L1PA7 6471 + 5493 6469 21266 128 1 0 35 0 4 238 5 7 338 0 1 225 chain 4289 chr5 181538259 + 91989059 91989113 L1MC1 2226 + 1993 2047 89571 54 chain 94701 chr5 181538259 + 92029153 92030278 L1PA7 6471 + 5333 6456 18944 113 0 1 180 4 0 650 0 1 178 chain 76802 chr5 181538259 + 92054322 92055157 L1PA2 6032 + 5197 6032 22375 835 chain 302974 chr5 181538259 + 92060125 92064735 HERVL-int 5654 + 1581 5646 6764 177 9 2 32 561 0 36 28 33 19 13 12 80 1 0 70 0 4 68 1 0 45 1 0 5 0 1 231 0 4 463 0 1 238 12 8 222 1 3 214 33 34 43 0 1 418 8 9 132 0 1 264 6 5 270 6 19 110 0 1 320 0 1 63 3 0 195 2 1 210 chain 43385 chr5 181538259 + 92060344 92060902 MER41A 554 + 0 554 32519 252 4 0 302 chain 12683 chr5 181538259 + 92107714 92107886 L1PA8 5853 + 5684 5853 65652 4 1 0 8 1 0 4 0 1 39 2 1 21 1 0 91 chain 451870 chr5 181538259 + 92215633 92221263 HERVL-int 5654 + 0 5654 4339 553 7 6 5 0 1 84 8 0 106 0 1 82 1 0 132 7 8 145 1 2 642 9 10 303 6 15 72 0 3 14 17 13 451 0 2 44 0 2 327 24 23 206 0 5 149 4 6 145 0 1 346 0 1 221 0 1 58 5 6 637 15 19 23 3 0 5 0 3 76 0 3 697 chain 27238 chr5 181538259 + 92221263 92221650 MLT2A1 477 + 0 394 45914 142 0 1 16 11 20 15 1 2 189 4 0 9 chain 81959 chr5 181538259 + 92259181 92260148 L1PA8 5853 + 4008 4981 21252 190 0 4 136 0 2 641 chain 142524 chr5 181538259 + 92273859 92275433 L1PA3long 6157 + 2682 4257 12888 627 0 1 947 chain 144314 chr5 181538259 + 92281504 92283158 L1PA5 6144 + 4485 6144 12749 485 0 1 101 1 2 220 7 8 270 0 2 570 chain 26010 chr5 181538259 + 92350382 92350724 THE1B 368 + 0 356 47703 44 0 15 105 11 10 182 chain 88758 chr5 181538259 + 92387606 92388601 L1PA4 6152 + 4888 5881 19897 159 3 0 105 0 1 728 chain 13206 chr5 181538259 + 92391363 92391801 L1MC1 2226 + 1787 2184 64765 36 34 31 26 14 8 29 1 0 32 34 31 13 2 0 48 61 49 13 38 26 6 1 0 13 5 4 32 chain 11931 chr5 181538259 + 92407390 92407544 MSTA-int 1630 + 1468 1624 66946 30 0 2 15 1 0 35 0 1 73 chain 466711 chr5 181538259 + 92435895 92441917 L1PA8A 6298 + 266 6292 3938 45 1 0 19 13 5 57 17 12 10 24 21 80 5 4 100 0 3 55 0 1 324 14 15 113 3 0 92 1 2 6 2 0 115 0 1 21 0 1 941 0 1 199 0 1 247 1 5 188 2 0 286 0 5 100 0 1 11 3 2 35 0 1 7 9 1 7 0 1 6 0 4 37 0 2 424 0 6 427 0 1 29 2 1 147 1 0 123 7 0 138 0 1 72 9 8 26 2 3 91 0 1 18 1 0 4 0 1 5 11 29 442 0 1 30 1 0 632 9 1 175 chain 3572 chr5 181538259 + 92501191 92501249 MLT2F 649 + 587 646 94646 20 8 9 30 chain 8613 chr5 181538259 + 92514112 92514222 L1MB8 1703 + 962 1072 73423 110 chain 65186 chr5 181538259 + 92541774 92542568 L1PA6 6164 + 5369 6161 25136 29 1 0 609 1 2 145 2 0 7 chain 26276 chr5 181538259 + 92546993 92547306 L1PA5 6144 + 5828 6144 47309 29 0 1 272 1 3 11 chain 150868 chr5 181538259 + 92583415 92585125 L1PA5 6144 + 4250 5963 12296 101 0 2 747 0 1 70 1 0 568 0 1 223 chain 120639 chr5 181538259 + 92631147 92632588 LTR12C 1709 + 0 1709 15423 144 4 0 152 0 1 12 0 1 340 0 119 64 5 4 234 0 47 106 0 4 179 0 102 108 2 1 91 chain 14514 chr5 181538259 + 92675735 92675913 L1PA5 6144 + 5954 6139 62886 35 1 8 142 chain 72592 chr5 181538259 + 92691594 92692481 L1PA7 6471 + 5574 6465 23405 40 0 4 11 4 0 583 0 1 4 1 0 95 0 2 6 0 1 136 0 1 7 chain 29621 chr5 181538259 + 92823741 92824175 LTR7Y 441 + 0 441 42460 103 9 0 57 68 84 197 chain 293144 chr5 181538259 + 92824175 92827997 HERVH-int 3825 + 0 3825 7034 532 5 0 38 250 0 10 1 0 12 4 0 5 3 35 12 0 20 8 40 0 26 2 1 15 21 0 42 0 1 7 0 2 12 0 3 57 1 4 599 0 1 131 0 5 104 7 34 297 0 13 111 0 3 304 0 1 625 9 11 39 8 218 260 0 2 225 chain 7079 chr5 181538259 + 92824750 92824831 HERVH-int 3825 + 450 531 74155 81 chain 8633 chr5 181538259 + 92824861 92824958 HERVH-int 3825 + 436 533 73387 97 chain 30044 chr5 181538259 + 92829272 92829706 LTR7Y 441 + 0 441 42007 103 9 0 57 68 84 197 chain 17950 chr5 181538259 + 92866097 92866338 AluSc 308 + 65 297 58702 13 2 0 156 2 0 38 1 0 14 4 0 11 chain 58988 chr5 181538259 + 92893451 92894113 L1PA3long 6157 + 3934 4597 26672 423 0 4 130 3 0 106 chain 4358 chr5 181538259 + 93048771 93048821 L1MB8 1703 + 812 862 89119 50 chain 7508 chr5 181538259 + 93112185 93112470 L1MB5 1630 + 1137 1435 76111 29 80 79 17 82 82 34 0 14 43 chain 112335 chr5 181538259 + 93148551 93149773 L1PA3long 6157 + 4931 6153 16774 1222 chain 23259 chr5 181538259 + 93157591 93157871 AluSg7 307 + 26 307 51987 102 1 2 177 chain 21000 chr5 181538259 + 93188396 93188688 L1PA8 5853 + 5565 5853 55124 44 2 0 70 1 0 8 2 0 6 0 2 8 0 1 36 2 1 19 1 0 93 chain 96557 chr5 181538259 + 93211574 93212670 L1PA5 6144 + 4865 5963 18707 357 1 0 587 0 3 151 chain 552751 chr5 181538259 + 93213145 93219176 L1PA2 6032 + 2 6032 564 254 1 0 179 0 1 5217 1 0 379 chain 546060 chr5 181538259 + 93261041 93267057 L1PA3long 6157 + 4 6149 966 148 0 1 588 1 0 36 1 129 3267 0 1 1975 chain 37137 chr5 181538259 + 93339324 93339744 L1P1 4361 + 3413 3833 36654 420 chain 70557 chr5 181538259 + 93374978 93375908 L1MA3 4352 + 2217 3139 23855 97 1 0 203 12 8 26 1 0 33 9 7 548 chain 513979 chr5 181538259 + 93442076 93448205 L1PA6 6164 + 0 6161 2570 194 7 8 307 2 1 429 0 25 488 1 0 873 0 2 863 0 1 78 0 1 7 0 3 250 4 1 938 4 3 843 1 0 353 0 1 36 0 8 77 3 0 371 chain 123329 chr5 181538259 + 93462486 93464057 THE1B-int 1605 + 0 1605 14977 8 0 1 200 1 5 86 13 14 116 0 25 495 3 4 114 0 1 162 0 1 373 chain 88975 chr5 181538259 + 93465053 93466082 L1PA6 6164 + 5132 6162 19862 407 0 1 220 0 1 386 1 0 15 chain 531322 chr5 181538259 + 93482153 93489251 L1PA7 6471 + 0 6469 1780 161 0 1 649 1 5 330 0 2 1493 10 0 67 1 0 392 6 10 225 7 8 164 639 0 38 1 5 40 0 1 242 2 0 170 1 0 111 0 1 559 0 4 430 0 2 310 1 3 201 1 0 25 3 2 34 2 0 78 4 0 517 0 1 115 4 10 43 1 2 8 2 0 10 chain 56017 chr5 181538259 + 93485665 93486272 L1PA3long 6157 + 5549 6156 27559 607 chain 6214 chr5 181538259 + 93494678 93494752 L1MB5 1630 + 1033 1107 80299 74 chain 22933 chr5 181538259 + 93520989 93521415 L1PA14 3548 + 3036 3452 52467 27 5 6 34 19 15 13 2 0 6 1 0 84 1 0 111 1 0 10 74 72 38 chain 451775 chr5 181538259 + 93523175 93529042 L1PA8 5853 + 50 5850 4342 22 2 0 10 1 0 6 64 25 192 0 4 86 15 13 5 1 0 1425 8 5 62 0 2 119 1 0 91 1 0 184 0 1 29 1 2 104 5 8 424 1 2 178 0 2 25 0 1 54 3 11 252 1 0 642 1 3 5 2 0 12 3 5 273 1 0 500 10 11 98 4 0 67 2 0 114 48 0 18 6 5 97 1 2 276 0 1 41 1 0 44 3 1 64 14 13 50 0 17 7 1 0 90 chain 6297 chr5 181538259 + 93539327 93539547 L1MA6 2487 + 2237 2404 80008 28 13 11 15 98 51 37 3 0 17 1 0 8 chain 32531 chr5 181538259 + 93549753 93550125 L1PA7 6471 + 6099 6470 39922 205 1 0 166 chain 520633 chr5 181538259 + 93689803 93696181 L1PA7 6471 + 44 6456 2245 113 1 0 4 0 1 6 10 13 162 7 8 55 1 2 580 1 2 18 0 1 58 0 12 134 0 4 4 0 10 11 0 2 9 0 1 6 0 2 6 8 6 636 0 1 132 1 2 68 0 1 307 1 0 199 27 8 7 1 0 340 5 1 527 1 0 333 3 0 141 0 17 11 1 0 195 2 1 136 0 4 146 0 1 1101 4 5 27 4 7 828 chain 143258 chr5 181538259 + 93756535 93761021 L1PB1 5432 + 113 4587 5538 26 0 2 167 2 1 82 12 10 182 1 2 28 1 0 4 0 1 9 5 4 347 6 5 158 1 0 67 10 14 25 0 4 144 1 0 7 62 47 153 0 1 491 0 3 188 5 4 136 11 11 49 12 8 326 0 1 175 1 0 85 1 2 361 1 2 287 1 0 4 2 1 140 2 1 581 5 6 122 chain 437161 chr5 181538259 + 93761070 93766082 L1PA4 6152 + 0 5034 4617 868 0 4 217 0 1 119 1 0 4 0 1 739 1 6 732 1 0 802 0 4 213 0 1 902 0 8 413 chain 36501 chr5 181538259 + 93767193 93768336 L1PB1 5432 + 4625 5420 5538 4 0 1 167 1 0 6 0 1 70 0 8 132 11 14 18 0 1 5 2 1 34 1 5 11 3 0 12 7 0 23 1 0 11 337 10 8 2 0 49 6 5 16 1 0 42 2 1 16 1 0 4 21 9 18 8 5 14 2 0 24 2 1 20 1 0 13 1 0 16 chain 201174 chr5 181538259 + 93770241 93772466 L1PA3long 6157 + 3929 6157 9677 428 1 5 343 2 1 1451 chain 18316 chr5 181538259 + 93777114 93777318 L1PA3long 6157 + 5953 6157 58344 204 chain 28364 chr5 181538259 + 93792522 93792860 L1PA3long 6157 + 5838 6157 44325 75 20 0 101 0 1 142 chain 26550 chr5 181538259 + 93855783 93856109 L1P1 4361 + 948 1274 46896 326 chain 26287 chr5 181538259 + 93869596 93869990 LTR7B 505 + 62 498 47293 46 0 10 57 0 38 12 3 27 12 30 0 14 0 2 85 1 0 76 14 13 44 chain 78018 chr5 181538259 + 93932899 93933814 L1PA7 6471 + 5558 6468 22096 63 1 0 840 4 0 7 chain 11549 chr5 181538259 + 93934909 93935164 L1PB1 5432 + 5144 5366 67660 12 2 0 3 2 0 9 2 0 51 3 2 15 1 0 45 1 0 15 1 0 4 26 8 18 12 9 11 7 5 15 chain 126415 chr5 181538259 + 93985403 93987034 SVA_B 1603 + 0 1603 14494 10 13 0 10 15 0 19 4 33 555 6 7 37 0 3 77 80 0 141 0 43 12 0 1 41 1 4 16 1 0 154 3 7 427 3 0 6 chain 2949 chr5 181538259 + 93986149 93986189 SVA_B 1603 + 439 479 78121 40 chain 24115 chr5 181538259 + 94017805 94018137 THE1A 353 + 0 330 50624 112 1 0 88 1 0 32 0 3 6 4 1 51 3 4 5 1 0 28 chain 30426 chr5 181538259 + 94019963 94020362 L1PA7 6471 + 6009 6397 41654 84 0 1 157 8 0 25 9 5 4 1 0 38 0 1 73 chain 2125 chr5 181538259 + 94020405 94020437 L1PA7 6471 + 6440 6468 105684 21 4 0 7 chain 7949 chr5 181538259 + 94020949 94021044 L1PA7 6471 + 6367 6462 75002 95 chain 33061 chr5 181538259 + 94035591 94036004 L1PA7 6471 + 6048 6456 39466 85 3 0 181 15 13 129 chain 43948 chr5 181538259 + 94039190 94039742 MER41A 554 + 0 554 32164 230 0 3 40 1 0 281 chain 44287 chr5 181538259 + 94044576 94045409 MER41A 554 + 0 548 31959 206 0 1 85 286 0 256 chain 27897 chr5 181538259 + 94097386 94097740 THE1B 368 + 0 368 45044 44 0 15 113 2 1 195 chain 89004 chr5 181538259 + 94099655 94101020 L1PA14 3548 + 2126 3475 19855 46 19 30 81 5 8 61 0 1 130 7 9 43 2 1 147 7 8 89 2 0 153 7 6 13 3 1 48 11 7 106 4 0 17 2 0 6 1 0 84 1 0 40 0 1 70 14 9 38 4 2 11 6 4 18 1 0 41 6 0 10 1 0 10 chain 141003 chr5 181538259 + 94146328 94148471 L1MA1 4479 + 1746 4152 13025 191 12 8 51 0 6 87 2 0 43 4 5 30 1 0 19 0 4 109 21 27 144 0 1 110 12 308 46 1 0 50 2 0 176 3 0 90 1 0 12 5 0 49 6 0 44 47 44 119 8 6 101 0 2 23 1 0 34 1 2 28 1 0 24 2 0 16 5 6 65 1 0 20 2 0 16 1 0 58 1 13 13 27 4 5 2 0 119 5 4 29 2 0 35 1 0 10 chain 29274 chr5 181538259 + 94164749 94165180 L1MA1 4479 + 3758 4172 42931 68 1 0 14 2 0 19 1 0 23 1 0 64 1 0 6 3 0 126 1 0 28 3 1 35 2 1 8 1 0 4 4 1 16 chain 20251 chr5 181538259 + 94198469 94198768 L1PA8 5853 + 5564 5852 56079 44 2 0 70 2 1 9 1 0 52 2 1 19 1 0 23 0 3 20 19 11 35 chain 96918 chr5 181538259 + 94225830 94227972 L1PA6 6164 + 4970 6162 18664 120 0 1 228 1 0 329 2 1 133 957 0 50 0 1 170 2 1 51 1 9 98 chain 82165 chr5 181538259 + 94226659 94227557 L1PA3long 6157 + 5259 6157 21210 898 chain 68400 chr5 181538259 + 94271113 94272497 L1MA3 4352 + 3063 4352 24358 4 1 0 48 0 12 213 0 3 44 1 0 9 6 7 26 305 255 342 25 5 24 0 2 6 1 0 30 37 13 7 3 0 122 4 0 25 2 0 16 14 12 29 1 0 11 6 2 22 chain 79424 chr5 181538259 + 94277250 94278235 L1PA8 5853 + 4837 5810 21760 173 2 0 74 0 2 183 7 0 145 0 1 105 7 8 36 1 0 46 2 0 67 6 5 6 1 0 52 2 1 19 1 0 50 chain 31906 chr5 181538259 + 94333721 94334093 L1PA7 6471 + 4580 4951 40407 168 1 0 203 chain 398434 chr5 181538259 + 94347431 94353067 L1PB1 5432 + 80 5424 5178 70 15 16 185 0 2 5 0 8 515 1 2 5 1 0 190 1 0 148 146 7 10 1 2 150 1 0 7 2 0 5 15 11 183 0 5 328 0 13 499 0 1 48 1 2 13 0 1 226 2 1 104 1 0 342 0 2 78 1 2 143 140 0 61 1 0 58 4 1 197 26 11 420 0 14 209 1 0 131 1 10 105 3 0 163 13 5 10 3 11 164 1 0 4 0 1 62 0 1 5 1 0 50 24 16 20 1 0 9 16 11 9 2 0 53 2 1 9 8 7 43 1 0 16 3 0 17 13 4 10 8 5 14 2 0 24 1 0 21 1 0 29 1 0 4 chain 6563 chr5 181538259 + 94348629 94348710 L1PB1 5432 + 1626 1707 79108 81 chain 3229 chr5 181538259 + 94412789 94412823 MER8 282 + 1 35 97672 34 chain 6232 chr5 181538259 + 94432221 94432337 MER5A1 166 + 29 132 80231 7 3 0 27 16 7 42 1 0 20 chain 27090 chr5 181538259 + 94516521 94516815 AluYd8 298 + 0 295 46138 199 1 2 94 chain 6820 chr5 181538259 + 94535110 94535223 MER67C 710 + 3 115 78239 58 19 18 36 chain 40126 chr5 181538259 + 94538931 94539442 MER41A 554 + 13 548 34576 184 2 3 28 4 5 22 1 21 202 0 2 68 chain 19769 chr5 181538259 + 94542831 94543159 PABL_A-int 1935 + 1399 1713 56714 24 22 12 4 0 1 80 6 4 29 7 5 42 6 5 108 chain 12451 chr5 181538259 + 94543552 94543695 MER41-int 2638 + 2476 2619 66067 143 chain 31250 chr5 181538259 + 94543748 94544141 MER41A 554 + 158 553 40932 70 0 1 53 11 12 259 chain 42882 chr5 181538259 + 94546684 94547434 L1M1 2793 + 790 1520 32845 12 1 0 23 11 9 5 1 0 35 48 29 97 0 3 103 0 4 56 20 19 65 4 0 19 4 0 7 3 0 6 8 9 54 0 7 7 1 3 23 23 21 114 chain 15382 chr5 181538259 + 94550003 94550201 L1MA3 4352 + 3835 4033 61809 198 chain 60037 chr5 181538259 + 94557518 94558295 LTR17 781 + 0 781 26363 244 0 1 82 1 0 32 42 43 135 0 3 241 chain 497344 chr5 181538259 + 94583052 94589161 L1PA6 6164 + 0 6158 3227 164 16 33 252 19 0 120 1 0 228 0 17 85 12 8 1367 0 2 652 0 1 294 0 1 258 4 0 13 0 2 1007 3 1 299 0 2 178 6 7 69 4 5 250 2 7 482 1 0 4 0 19 229 1 14 83 1 0 5 chain 71854 chr5 181538259 + 94717169 94718092 L1PA10 4194 + 3228 4161 23579 69 0 1 39 0 2 62 0 2 284 19 22 38 2 1 197 0 4 94 0 3 70 3 0 34 1 0 11 chain 23692 chr5 181538259 + 94719858 94720133 AluSp 311 + 11 290 51286 80 0 3 183 0 1 12 chain 5272 chr5 181538259 + 94731249 94731309 MER30B 195 + 132 192 84332 60 chain 11990 chr5 181538259 + 94732266 94732441 MER30 238 + 48 238 66852 32 1 0 20 8 0 11 1 25 102 chain 22363 chr5 181538259 + 94751857 94752107 L1PA3long 6157 + 5896 6149 53329 244 0 3 6 chain 35616 chr5 181538259 + 94766250 94766683 L1PA5 6144 + 5711 6144 37650 215 0 1 104 1 0 46 1 2 52 3 2 11 chain 2829 chr5 181538259 + 94829454 94829484 MADE1 96 - 66 96 101408 30 chain 40994 chr5 181538259 + 94844952 94846372 L1PA15 4387 + 3648 4366 33974 132 6 5 28 5 7 15 715 26 19 4 10 43 1 0 167 10 9 22 11 9 45 1 0 27 4 0 5 1 0 50 6 3 44 35 29 13 1 0 10 chain 520980 chr5 181538259 + 94954969 94961426 L1PA7 6471 + 3 6468 2227 168 3 0 159 15 16 58 1 2 271 31 32 341 1 12 6 11 0 92 0 2 13 0 1 48 0 1 26 1 0 20 9 10 68 2 1 400 4 3 133 0 3 646 4 9 92 4 0 51 11 8 368 0 2 458 0 1 113 2 0 199 0 1 58 1 0 590 0 1 92 0 1 1031 4 7 122 41 36 617 0 5 4 0 1 57 2 0 9 chain 16540 chr5 181538259 + 94962522 94962864 L1PB1 5432 + 5114 5427 60319 24 1 0 9 1 0 9 2 0 3 2 0 8 2 0 53 2 1 15 1 0 45 1 0 11 17 5 29 3 1 5 1 0 14 7 9 15 1 0 11 4 4 6 1 0 13 1 0 18 2 0 5 chain 42218 chr5 181538259 + 94994621 94995168 MLT2A2 560 + 0 559 33237 183 1 0 192 0 1 23 3 14 77 3 4 65 chain 120283 chr5 181538259 + 95001270 95002856 THE1C-int 1605 + 0 1592 15485 18 1 0 162 8 8 251 12 19 66 5 4 77 0 1 148 13 7 60 9 16 548 1 0 207 chain 52429 chr5 181538259 + 95014295 95015229 Tigger1 2417 + 1597 2400 28748 66 7 0 86 6 5 30 32 32 69 137 28 295 2 0 26 1 0 16 0 3 9 14 0 9 0 1 22 10 9 97 chain 169306 chr5 181538259 + 95098435 95100283 L1PA3long 6157 + 4309 6157 11138 1848 chain 57645 chr5 181538259 + 95120226 95120993 L1MA3 4352 + 1625 2391 27071 26 1 0 604 1 2 56 1 0 78 chain 30342 chr5 181538259 + 95135415 95135834 MLT2A1 477 + 0 477 41718 127 1 24 18 0 4 150 1 0 62 4 0 8 7 43 41 chain 138668 chr5 181538259 + 95178422 95180269 L1PBa 3878 + 193 2147 13212 19 1 0 21 3 1 28 7 84 39 1 0 138 1 0 110 0 8 7 8 0 332 0 1 68 4 1 263 0 3 32 3 4 13 0 1 97 1 0 151 1 0 5 2 0 63 0 38 13 0 1 154 2 1 102 2 0 156 chain 21604 chr5 181538259 + 95183915 95184158 L1PA7 6471 + 6218 6461 54347 243 chain 27021 chr5 181538259 + 95186913 95187303 L1MA2 4263 + 3724 4102 46240 85 3 0 88 2 1 58 2 1 9 1 0 92 7 0 11 0 1 32 chain 273562 chr5 181538259 + 95211936 95215013 L1PA4 6152 + 3057 6140 7620 332 0 4 915 0 2 5 1 0 1723 0 1 101 chain 379592 chr5 181538259 + 95244237 95250164 L1PA6 6164 + 28 6161 5490 421 24 16 102 1 0 106 18 35 87 1 18 88 0 4 38 0 6 50 6 0 256 0 1 189 4 1 381 0 2 111 0 1 277 0 24 92 7 0 255 1212 1345 19 0 9 400 0 4 422 0 1 54 0 7 457 2 1 6 0 6 224 0 1 448 18 0 8 0 18 128 1 0 14 chain 44292 chr5 181538259 + 95260177 95260799 LTR66 600 + 0 600 31955 45 0 1 120 0 1 246 38 0 27 19 0 16 1 34 110 chain 323075 chr5 181538259 + 95337631 95341365 L1P2 5180 + 1440 5178 6354 1155 0 6 478 0 1 109 1 0 506 1 0 464 7 7 156 1 3 765 1 0 45 1 0 39 1 0 4 chain 73974 chr5 181538259 + 95391643 95392511 L1PA7 6471 + 5594 6467 23099 27 0 4 68 0 2 189 0 1 268 1 0 167 0 1 138 2 0 8 chain 9378 chr5 181538259 + 95408930 95409088 MER33 330 + 17 174 71750 59 3 0 42 5 6 26 9 10 14 chain 23783 chr5 181538259 + 95459894 95460174 AluYc3 301 + 8 288 51138 105 1 2 27 0 1 130 2 0 15 chain 10149 chr5 181538259 + 95479529 95479675 MER44A 345 + 103 256 70108 55 3 13 6 0 1 56 4 0 22 chain 32120 chr5 181538259 + 95486919 95487349 MLT2A1 477 + 0 477 40252 142 0 1 26 1 5 211 1 40 34 1 0 8 0 4 6 chain 28963 chr5 181538259 + 95492354 95492666 AluYa5 310 + 0 310 43390 132 1 0 164 1 0 14 chain 41651 chr5 181538259 + 95510205 95510874 LTR8 732 + 16 724 33591 16 21 34 90 1 0 55 11 10 36 0 3 82 0 33 88 7 9 55 24 18 21 24 20 138 chain 23002 chr5 181538259 + 95539210 95539561 L1PB2 3958 + 3330 3670 52355 33 1 0 8 3 0 6 4 1 61 6 4 8 2 0 94 2 3 69 1 0 53 chain 5361 chr5 181538259 + 95572918 95573012 MER20 218 + 38 136 83901 34 20 24 40 chain 49913 chr5 181538259 + 95585020 95585800 L1PB1 5432 + 4654 5422 29597 140 0 8 114 1 5 182 15 15 17 2 0 12 15 16 5 2 0 52 2 1 15 1 0 45 1 0 16 5 0 7 11 4 18 7 1 5 1 0 14 2 0 24 1 0 8 0 1 13 1 0 10 0 4 16 chain 23746 chr5 181538259 + 95706209 95706576 MSTA 426 + 2 403 51202 106 16 40 79 21 12 61 4 23 80 chain 47668 chr5 181538259 + 95716103 95716714 THE1B-int 1605 + 995 1605 30412 183 5 4 189 8 9 114 1 0 111 chain 45487 chr5 181538259 + 95728657 95729280 MER41B 635 + 0 635 31313 128 1 2 160 0 1 6 10 12 80 0 1 78 1 0 81 0 5 20 9 12 49 chain 5192 chr5 181538259 + 95775485 95775567 Tigger4b 360 + 280 360 84719 23 11 9 48 chain 137058 chr5 181538259 + 95850983 95852649 LTR12C 1709 + 0 1709 13338 209 2 0 281 1 2 184 0 41 120 1 0 132 1 6 137 1 0 4 4 2 106 0 4 296 2 1 87 14 13 84 chain 29444 chr5 181538259 + 96007623 96007934 AluYa5 310 + 0 310 42679 97 1 0 213 chain 3115 chr5 181538259 + 96258449 96258521 MER104 178 + 29 103 98659 27 24 26 21 chain 3304 chr5 181538259 + 96330145 96330183 MADE2 80 + 4 42 96979 38 chain 30509 chr5 181538259 + 96395426 96395796 L1PA7 6471 + 6094 6465 41557 202 2 3 166 chain 29263 chr5 181538259 + 96400805 96401112 AluYk11 308 + 0 307 42945 307 chain 106662 chr5 181538259 + 96451363 96452651 L1PA7 6471 + 5180 6470 17475 520 1 4 7 1 0 445 5 4 147 2 0 5 12 14 108 5 6 30 chain 11755 chr5 181538259 + 96460339 96460543 L1PA8 5853 + 5653 5853 67299 18 42 39 30 2 1 19 1 0 28 0 1 64 chain 2459 chr5 181538259 + 96468076 96468109 L1PB3 3668 - 138 179 103860 26 0 8 7 chain 61465 chr5 181538259 + 96542767 96543546 L1PA8 5853 + 5073 5853 25995 120 0 3 37 0 2 285 0 1 41 1 0 46 2 0 70 2 1 8 0 1 4 2 1 47 2 1 9 0 1 9 1 0 93 chain 425863 chr5 181538259 + 96549426 96554752 L1PA6 6164 + 4 5354 4800 390 14 20 35 19 0 118 1 0 221 5 22 220 0 1 180 12 11 736 1 0 369 1 2 64 0 1 795 0 1 32 0 1 17 0 4 19 1 5 435 1 0 271 0 1 80 7 8 23 4 9 84 0 1 1062 0 1 48 1 0 20 1 0 7 14 18 18 chain 531367 chr5 181538259 + 96555240 96561295 L1PA4 6152 + 0 6081 1777 102 0 1 592 0 15 526 0 1 1006 10 12 58 1 0 73 0 4 781 1 0 12 1 0 332 0 1 831 0 4 391 1 0 558 0 5 732 3 0 44 chain 26113 chr5 181538259 + 96561387 96561718 L1PA7 6471 + 6132 6466 47550 93 1 2 17 0 1 68 0 1 152 chain 7866 chr5 181538259 + 96609870 96609967 THE1B-int 1605 + 1508 1605 75215 97 chain 11006 chr5 181538259 + 96619096 96619360 LTR12C 1709 + 658 877 68552 25 41 0 27 0 41 15 26 0 7 13 0 45 9 4 15 1 0 40 chain 2012 chr5 181538259 + 96619138 96619162 LTR12C 1709 + 859 883 83881 24 chain 6300 chr5 181538259 + 96643297 96643378 L1MB8 1703 + 1497 1578 79995 81 chain 9309 chr5 181538259 + 96647497 96647636 MLT1B 390 + 0 151 71896 54 9 21 76 chain 13830 chr5 181538259 + 96681940 96682114 MER44A 345 + 79 259 63828 22 0 6 152 chain 16658 chr5 181538259 + 96732644 96732823 L1PA2 6032 + 4727 4906 60201 179 chain 20284 chr5 181538259 + 96733653 96733896 AluSp 311 + 58 301 56033 243 chain 11814 chr5 181538259 + 96841486 96841694 LTR39 781 + 0 184 67177 16 36 23 7 10 0 53 1 0 85 chain 6079 chr5 181538259 + 96929655 96929760 MER4D1 891 + 779 884 80807 24 19 13 6 0 6 56 chain 17901 chr5 181538259 + 96942674 96942884 L1PA5 6144 + 5934 6144 58755 210 chain 31114 chr5 181538259 + 97040903 97041504 Tigger3b 1229 + 484 1139 41049 41 1 0 4 0 1 22 1 0 9 0 1 4 0 13 7 8 15 9 0 1 12 4 8 25 5 14 13 42 57 30 14 12 79 0 11 51 42 39 46 0 4 68 5 0 59 chain 7123 chr5 181538259 + 97070672 97070758 MER57B1 401 + 0 86 77190 86 chain 3903 chr5 181538259 + 97081219 97081270 L1MA3 4352 + 4258 4307 92101 24 1 0 6 1 0 19 chain 4676 chr5 181538259 + 97138927 97139016 Tigger4a 237 + 148 237 87404 16 2 13 10 4 0 5 7 0 45 chain 32925 chr5 181538259 + 97179570 97179961 L1PA7 6471 + 6068 6456 39570 295 2 0 89 1 0 4 chain 106559 chr5 181538259 + 97213921 97215247 L1PA10 4194 + 1633 2961 17487 194 7 6 389 0 4 20 4 3 379 2 3 16 4 3 12 1 0 75 4 5 219 chain 5105 chr5 181538259 + 97221374 97221431 L1PA4 6152 + 3197 3254 85139 57 chain 94663 chr5 181538259 + 97295548 97296589 L1PA3long 6157 + 3660 4701 18946 1041 chain 110403 chr5 181538259 + 97300966 97302295 LTR12C 1709 + 0 1709 17020 650 0 278 184 1 0 4 4 2 106 0 4 168 0 102 123 12 11 77 chain 76585 chr5 181538259 + 97360911 97361850 L1PA7 6471 + 5521 6461 22419 23 1 2 52 5 0 16 0 3 135 0 1 553 3 4 151 chain 15646 chr5 181538259 + 97407682 97407868 LTR12C 1709 + 869 1055 61475 186 chain 29683 chr5 181538259 + 97444830 97445367 L1PA14 3548 + 3000 3485 42386 5 2 0 102 15 11 13 2 0 6 1 0 84 1 0 111 43 11 17 0 2 17 4 2 12 5 3 19 1 0 41 6 0 9 1 0 20 chain 144883 chr5 181538259 + 97596009 97597839 L1PA8 5853 + 3556 5424 12701 86 2 1 5 0 1 325 0 1 359 3 0 35 1 2 74 0 30 11 0 1 22 0 6 472 0 1 18 4 3 73 0 2 340 chain 192321 chr5 181538259 + 97631441 97633523 L1PA2 6032 + 3950 6032 10008 2082 chain 12321 chr5 181538259 + 97869717 97869969 L1PA16 3655 + 3393 3619 66265 74 7 8 88 67 40 16 chain 21107 chr5 181538259 + 97886003 97886381 THE1D 372 + 0 372 55001 15 0 2 37 9 0 20 3 0 6 19 23 59 47 49 13 1 0 31 1 0 117 chain 4040 chr5 181538259 + 97929678 97929788 MER77 626 + 81 192 91148 28 50 51 32 chain 30452 chr5 181538259 + 97989734 97990214 L1PB2 3958 + 3378 3837 41626 54 26 19 94 1 0 73 1 0 63 1 0 12 13 9 29 4 0 18 6 4 22 1 0 62 chain 529835 chr5 181538259 + 97991313 97997439 L1PA4 6152 + 0 6134 1833 161 0 6 6 6 0 1210 4 0 936 0 1 190 2 0 1533 0 1 482 0 1 101 0 1 505 1 5 10 0 5 370 0 3 554 2 0 53 chain 88608 chr5 181538259 + 98008297 98009382 L1PA7 6471 + 5382 6470 19917 239 1 0 342 4 5 163 1 4 335 chain 442882 chr5 181538259 + 98022598 98028097 L1PA4 6152 + 2 5187 4517 152 3 4 367 1 5 8 2 0 298 17 0 173 2 3 359 0 1 197 9 1 251 1 2 565 0 4 36 0 3 747 6 7 137 304 0 360 1 3 6 1 0 1496 chain 3685 chr5 181538259 + 98041420 98041466 MER5B 177 - 6 52 93704 46 chain 17153 chr5 181538259 + 98079477 98079690 L1PA5 6144 + 5929 6144 59631 67 1 8 134 5 0 6 chain 248330 chr5 181538259 + 98080082 98083107 HERVH-int 3825 + 436 3825 8282 45 0 56 33 1 0 10 1 0 12 0 1 5 0 31 28 0 61 22 22 25 13 0 3 2245 0 1 93 37 247 59 23 23 376 chain 28535 chr5 181538259 + 98084914 98085315 LTR7 482 + 0 482 44059 68 9 47 109 0 1 41 17 58 30 1 2 126 chain 528195 chr5 181538259 + 98113457 98119596 L1PA5 6144 + 0 6142 1906 1672 0 2 212 1 0 519 0 1 315 0 7 256 1 0 178 1 2 231 0 1 881 0 1 71 0 4 814 18 5 181 2 1 113 0 1 342 1 2 330 chain 284241 chr5 181538259 + 98122126 98126107 L1PA10 4194 + 220 4161 7312 12 2 0 9 1 0 9 24 21 15 1 0 8 51 25 16 2 0 37 0 3 7 8 0 12 4 0 9 1 0 79 4 2 173 1 2 348 3 0 138 0 1 4 1 0 12 3 5 102 11 1 345 0 1 32 0 4 107 2 0 7 0 1 348 0 1 108 23 24 161 8 10 11 12 14 49 13 14 141 1 2 26 0 4 443 4 1 238 11 12 490 0 3 68 0 2 176 5 4 33 1 0 11 chain 488392 chr5 181538259 + 98135476 98140955 L1PA3long 6157 + 631 6137 3459 408 0 1 26 5 6 4 1 0 413 0 1 357 0 4 49 1 0 9 0 18 744 0 1 1971 0 3 1491 chain 58438 chr5 181538259 + 98191488 98192133 L1PA4 6152 + 3807 4451 26827 639 1 0 5 chain 41525 chr5 181538259 + 98203727 98204238 MER9a1 513 + 0 513 33665 94 0 9 190 1 2 157 8 0 61 chain 121255 chr5 181538259 + 98222621 98224103 L1P1 4361 + 2856 4341 15306 315 1 0 258 0 3 13 0 1 484 0 1 219 1 0 155 1 0 21 2 3 12 chain 152883 chr5 181538259 + 98238533 98240234 L1PA4 6152 + 4446 6151 12179 858 0 4 843 chain 97791 chr5 181538259 + 98266026 98267194 L1PA6 6164 + 4987 6156 18549 406 5 6 757 chain 27909 chr5 181538259 + 98274941 98275548 L1MA3 4352 + 3753 4314 45017 20 19 4 158 3 5 153 174 145 13 9 7 23 1 0 7 1 0 26 chain 6917 chr5 181538259 + 98305175 98305404 L1PB3 3668 + 3407 3565 77890 71 133 62 25 chain 51152 chr5 181538259 + 98325575 98326228 L1PA8 5853 + 4292 4945 29182 48 3 1 21 0 1 112 1 2 156 0 1 294 1 0 17 chain 80362 chr5 181538259 + 98328653 98329534 L1PA3long 6157 + 5276 6157 21557 881 chain 551626 chr5 181538259 + 98342998 98349146 L1PA3long 6157 + 6 6157 629 735 0 1 1416 0 1 1049 1 2 1053 0 1 1032 6 5 856 chain 80122 chr5 181538259 + 98395801 98396688 L1PA3long 6157 + 5270 6156 21604 882 1 0 4 chain 3608 chr5 181538259 + 98471880 98471929 MSTC 436 + 372 423 94347 17 1 3 31 chain 4251 chr5 181538259 + 98481631 98481744 MLT1E2 623 + 1 113 89822 17 52 51 44 chain 20170 chr5 181538259 + 98495881 98496376 L1PB1 5432 + 5000 5413 56171 32 8 7 6 0 1 6 1 0 51 27 2 12 0 1 20 1 0 5 55 15 9 2 0 53 2 1 16 1 0 42 2 1 16 3 0 7 14 5 19 8 5 14 16 22 23 1 0 13 1 0 9 chain 4561 chr5 181538259 + 98504120 98504174 MIR 256 + 129 183 88013 54 chain 13010 chr5 181538259 + 98542569 98542827 L1PA11 4918 + 4328 4567 65103 63 16 13 71 2 0 14 5 4 15 21 12 10 13 9 28 chain 543658 chr5 181538259 + 98546670 98552693 L1PA3long 6157 + 4 6152 1099 148 0 1 558 7 0 65 0 128 1359 1 3 2214 0 1 1671 chain 64823 chr5 181538259 + 98572103 98572904 L1PA7 6471 + 5377 6184 25232 50 0 1 156 9 10 28 3 8 67 0 2 157 1 2 39 4 0 287 chain 68429 chr5 181538259 + 98594820 98595588 L1PA5 6144 + 5375 6144 24349 659 0 1 109 chain 18971 chr5 181538259 + 98609264 98609535 L1PA8 5853 + 5587 5853 57580 21 2 0 70 2 1 14 1 0 4 1 2 41 2 1 19 1 0 93 chain 3840 chr5 181538259 + 98619198 98619248 L1MA6 2487 + 2339 2386 92559 40 3 0 7 chain 462991 chr5 181538259 + 98668429 98674756 L1PA8A 6298 + 64 6288 4050 7 2 0 7 6 1 21 4 1 18 19 11 17 2 1 9 3 2 14 1 0 4 4 2 10 2 0 16 6 3 13 1 0 8 1 0 9 1 0 5 2 1 13 5 1 7 1 0 43 1 0 9 27 13 57 21 9 11 2 0 9 22 19 86 0 1 581 0 4 34 5 0 89 1 0 76 19 16 172 0 1 4 1 0 40 0 1 4 15 14 10 0 1 172 0 5 312 7 0 309 0 2 62 4 5 17 0 1 54 1 2 60 8 1 300 1 0 183 7 8 147 0 1 49 0 1 112 1 0 19 3 0 5 0 3 6 0 5 5 8 0 555 0 2 299 1 6 259 0 8 427 0 1 160 1 0 4 0 1 140 0 2 292 0 2 7 11 7 39 8 16 31 5 0 62 0 1 15 0 1 78 57 10 278 0 1 40 2 0 7 1 3 119 chain 323240 chr5 181538259 + 98681871 98686399 L1PA7 6471 + 2427 6470 6349 128 1 5 7 13 0 65 21 0 62 4 1 174 0 1 4 1 0 140 3 0 3 4 0 6 0 7 518 7 8 265 16 9 983 0 4 13 0 1 124 2 0 351 116 0 137 0 3 55 0 2 61 4 10 45 4 3 85 348 5 758 chain 29014 chr5 181538259 + 98685301 98685626 L1PA5 6144 + 5819 6144 43298 325 chain 13983 chr5 181538259 + 98704508 98704659 L1PA3long 6157 + 5235 5386 63624 151 chain 69895 chr5 181538259 + 98704659 98705428 L1PA3long 6157 + 5388 6157 24019 769 chain 135388 chr5 181538259 + 98705444 98707604 L1PB1 5432 + 3306 5422 13503 205 4 5 62 3 0 65 0 1 60 74 68 190 1 0 203 1 0 97 18 20 106 0 1 24 19 18 192 5 0 6 0 1 27 0 4 29 6 10 17 1 4 214 20 0 119 1 2 20 41 42 16 1 0 8 3 2 12 6 2 10 1 0 52 2 1 16 2 1 39 45 35 13 26 21 6 0 1 17 1 0 22 1 0 12 1 0 18 chain 40103 chr5 181538259 + 98717749 98718203 L1PA7 6471 + 4271 4729 34591 397 0 4 57 chain 21896 chr5 181538259 + 98718203 98718460 L1PA7 6471 + 4730 4984 53973 249 3 0 5 chain 124274 chr5 181538259 + 98718469 98719942 L1PA7 6471 + 4996 6466 14800 624 2 3 770 12 8 65 chain 43222 chr5 181538259 + 98723900 98724374 L1PA3long 6157 + 5683 6157 32633 474 chain 2815 chr5 181538259 + 98727242 98727275 MLT1J1 437 + 52 86 101579 25 0 1 8 chain 141295 chr5 181538259 + 98737215 98739021 L1PA5 6144 + 0 5880 12999 135 17 31 513 1 2 271 25 0 57 0 4081 294 0 1 331 0 2 162 chain 281747 chr5 181538259 + 98743090 98747032 L1PA10 4194 + 251 4150 7381 20 2 0 15 59 32 19 2 0 16 1 0 7 0 3 11 1 0 6 1 0 15 10 0 8 2 1 37 28 35 12 5 3 412 0 1 55 3 1 144 0 1 22 18 0 27 0 2 6 4 1 43 2 4 81 5 0 193 16 16 515 0 4 292 0 1 51 0 1 246 1 2 5 1 0 22 18 19 6 1 0 298 22 23 139 2 6 315 0 3 181 4 5 43 19 22 160 0 1 5 1 2 209 2 0 34 8 6 34 chain 2916 chr5 181538259 + 98753393 98753425 MER5B 177 + 73 105 100701 32 chain 25505 chr5 181538259 + 98756831 98757203 THE1B 368 + 0 368 48479 13 2 0 23 1 6 48 11 7 76 4 3 16 2 0 176 chain 6674 chr5 181538259 + 98770683 98770804 MER50 708 + 495 601 78719 42 1 0 10 9 0 7 2 1 4 4 0 42 chain 20961 chr5 181538259 + 98814486 98814718 SVA_B 1603 + 1365 1597 55178 232 chain 39175 chr5 181538259 + 98822013 98822775 L1PB1 5432 + 4714 5430 35230 40 1 0 169 1 0 4 0 1 9 5 6 118 23 23 14 28 16 24 1 0 5 2 1 14 17 11 51 3 1 14 6 5 38 3 2 16 2 0 6 18 6 9 0 2 7 27 22 25 1 0 20 1 0 9 5 4 16 1 0 4 1 0 4 chain 13468 chr5 181538259 + 98884373 98884648 L1PB1 5432 + 5170 5422 64358 50 2 1 12 7 6 42 2 1 14 28 16 15 3 0 19 2 0 24 1 0 21 1 0 13 1 0 18 chain 7126 chr5 181538259 + 98925795 98925941 MER3 215 + 48 215 77173 55 47 68 44 chain 77006 chr5 181538259 + 98987489 98988339 L1PA3long 6157 + 5306 6156 22313 850 chain 10650 chr5 181538259 + 98989512 98989654 L1PB4 2604 + 1906 2064 69127 16 2 18 124 chain 11867 chr5 181538259 + 98993098 98993259 L1PA8 5853 + 5693 5853 67077 46 3 2 12 0 1 6 2 1 92 chain 514066 chr5 181538259 + 99037329 99043719 L1PA7 6471 + 19 6413 2566 224 0 1 135 5 6 27 1 0 127 7 12 230 5 4 439 7 0 28 17 36 53 14 18 165 0 1 18 19 0 17 10 9 594 0 4 469 25 12 849 1 0 25 6 1 172 1 10 26 1 2 234 0 1 560 0 1 436 2 1 462 0 1 170 0 4 18 2 1 76 0 2 713 chain 512915 chr5 181538259 + 99146176 99152296 L1PA5 6144 + 0 6076 2625 120 0 14 252 59 6 333 1 0 4 0 1 69 7 0 110 0 9 21 0 4 226 9 0 209 0 4 203 6 5 719 12 0 849 1 0 44 3 0 56 0 2 21 5 6 439 0 4 112 1 2 1464 0 1 209 0 1 313 1 0 156 1 3 85 chain 47723 chr5 181538259 + 99183497 99184048 L1PA5 6144 + 2321 2872 30386 551 chain 25545 chr5 181538259 + 99184048 99184344 L1PA5 6144 + 2879 3175 48413 296 chain 27278 chr5 181538259 + 99184344 99184662 L1PA5 6144 + 3188 3506 45854 318 chain 15116 chr5 181538259 + 99260515 99260751 L1MA2 4263 + 3823 4054 62136 40 0 2 5 7 0 13 4 6 67 11 9 89 chain 8269 chr5 181538259 + 99298154 99298330 L1PB1 5432 + 5260 5423 74238 19 2 1 16 4 0 30 14 11 11 2 0 22 1 0 23 2 1 24 1 0 5 chain 68153 chr5 181538259 + 99298706 99299481 L1PA5 6144 + 5367 6144 24418 763 1 3 11 chain 89833 chr5 181538259 + 99328392 99329417 LTR5A 1029 + 0 1029 19715 150 1 0 633 0 3 73 0 2 168 chain 44066 chr5 181538259 + 99395886 99396410 L1PA6 6164 + 5628 6156 32103 511 0 4 13 chain 51242 chr5 181538259 + 99453941 99457026 L1PA3long 6157 + 4121 6156 29149 983 1050 0 1052 chain 46733 chr5 181538259 + 99464293 99464849 L1PA7 6471 + 5910 6465 30756 398 1 0 157 chain 5014 chr5 181538259 + 99466297 99466371 L1PB3 3668 + 3402 3478 85587 51 4 6 19 chain 21403 chr5 181538259 + 99484511 99484868 THE1B 368 + 2 368 54630 167 1 0 23 40 50 29 0 1 28 30 29 39 chain 82289 chr5 181538259 + 99486665 99487584 L1PA3long 6157 + 5236 6157 21179 873 0 2 46 chain 208478 chr5 181538259 + 99501363 99503777 L1PA5 6144 + 3717 6144 9401 292 0 1 122 0 1 114 1 0 4 0 1 224 1 0 4 0 1 759 0 2 52 0 6 65 0 4 757 1 0 18 chain 3211 chr5 181538259 + 99565514 99565548 MER57B1 401 + 0 34 97794 34 chain 4215 chr5 181538259 + 99586003 99586061 MLT1C 463 + 31 87 90033 19 2 0 37 chain 202893 chr5 181538259 + 99690856 99693058 L1PA2 6032 + 3829 6031 9608 2202 chain 9543 chr5 181538259 + 99755353 99755463 L1PA16 3655 + 3427 3537 71382 110 chain 4229 chr5 181538259 + 99797935 99797984 HERVL-int 5654 + 4767 4816 89947 49 chain 3693 chr5 181538259 + 99798412 99798451 MLT2A1 477 + 438 477 93664 39 chain 75343 chr5 181538259 + 99848667 99849508 L1PA3long 6157 + 5314 6157 22759 558 0 3 265 1 0 17 chain 549189 chr5 181538259 + 99855982 99861944 L1PA2 6032 + 7 6029 800 783 0 60 5179 chain 34960 chr5 181538259 + 99861944 99862330 L1PA2 6032 + 5646 6032 38050 386 chain 9605 chr5 181538259 + 99872556 99872763 L1PB1 5432 + 5198 5384 71257 22 2 1 16 1 0 43 1 0 16 1 0 4 19 8 19 28 23 20 1 0 14 chain 50414 chr5 181538259 + 99876608 99877189 L1PA5 6144 + 5561 6144 29408 569 1 3 11 chain 95644 chr5 181538259 + 99896370 99897404 L1PA2 6032 + 3603 4637 18824 1034 chain 128614 chr5 181538259 + 99897426 99898820 L1PA2 6032 + 4637 6031 14204 1394 chain 50098 chr5 181538259 + 99919607 99920242 LTR12_ 688 + 2 687 29523 23 9 8 22 0 41 169 1 11 411 chain 26579 chr5 181538259 + 100012824 100013128 L1PA7 6471 + 6157 6461 46859 304 chain 34242 chr5 181538259 + 100088525 100088907 L1PA3long 6157 + 4847 5230 38531 17 0 1 365 chain 156513 chr5 181538259 + 100169624 100171376 L1PA4 6152 + 4399 6151 11967 1499 1 0 229 0 1 23 chain 8207 chr5 181538259 + 100211239 100211423 L1PA15 4387 + 4198 4366 74399 8 4 0 11 1 0 42 19 16 38 2 0 14 17 12 17 1 0 10 chain 68391 chr5 181538259 + 100218723 100219492 L1PA3long 6157 + 5391 6153 24361 612 7 0 150 chain 29447 chr5 181538259 + 100240881 100241268 MSTA-int 1630 + 0 386 42674 12 1 2 315 2 0 57 chain 15900 chr5 181538259 + 100264194 100264420 MER30 238 + 0 236 61158 7 4 0 104 14 28 97 chain 23251 chr5 181538259 + 100270996 100271264 L1PA4 6152 + 5884 6151 52003 14 2 1 252 chain 209428 chr5 181538259 + 100286587 100289214 L1PA5 6144 + 2104 6126 9370 71 1 3 135 1 0 224 0 2 493 201 1593 690 6 5 669 0 1 136 chain 134654 chr5 181538259 + 100309598 100311631 L1PA7 6471 + 4766 6465 13578 183 1 0 131 0 1 69 5 3 42 0 1 426 2 0 127 7 5 46 333 8 8 0 1 210 3 0 80 2 0 29 5 6 179 2 1 143 chain 8378 chr5 181538259 + 100316150 100316328 L1MA5A 2387 + 2036 2205 73953 29 1 0 22 26 20 40 26 24 34 chain 101410 chr5 181538259 + 100386141 100387668 THE1B-int 1605 + 13 1595 18138 241 106 52 83 7 71 76 9 16 109 15 16 18 6 12 120 11 12 117 6 1 193 0 14 78 0 6 53 0 5 93 19 24 96 0 5 71 chain 3452 chr5 181538259 + 100415891 100415975 MER58A 224 + 45 184 95642 29 6 0 10 22 83 17 chain 7644 chr5 181538259 + 100423590 100423739 LTR19C 757 + 0 143 75765 35 10 12 16 1 0 27 1 0 4 5 2 11 6 3 33 chain 29381 chr5 181538259 + 100423772 100424079 AluYg6 310 + 0 307 42767 307 chain 30615 chr5 181538259 + 100425349 100425730 LTR12F 595 + 0 549 41454 72 0 167 125 0 1 184 chain 60736 chr5 181538259 + 100439444 100440100 L1PA3long 6157 + 4086 4742 26168 656 chain 95115 chr5 181538259 + 100506870 100508043 L1PA7 6471 + 5285 6466 18892 170 0 1 165 1 0 12 0 1 66 0 2 214 7 8 182 0 2 78 0 4 17 0 1 251 3 0 7 chain 16711 chr5 181538259 + 100525848 100526189 L1PB1 5432 + 5114 5422 60141 23 1 0 9 1 0 9 8 4 9 2 0 52 2 1 16 1 0 45 1 0 6 36 22 17 8 5 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 43810 chr5 181538259 + 100573484 100573957 L1PA2 6032 + 4276 4749 32244 473 chain 88106 chr5 181538259 + 100606038 100607048 LTR5A 1029 + 0 1029 20029 29 0 2 103 0 13 534 0 4 344 chain 54931 chr5 181538259 + 100630102 100630780 L1PA7 6471 + 4347 5031 27899 45 2 3 245 0 1 30 0 4 356 chain 206041 chr5 181538259 + 100639366 100642138 MER61-int 3695 + 907 3694 9503 97 1 0 207 2 3 11 4 7 18 6 7 175 9 0 71 2 1 115 0 5 517 0 1 199 6 0 79 0 1 339 6 5 86 7 8 4 1 0 241 0 2 39 0 1 4 3 1 202 10 12 94 0 16 47 0 1 131 9 10 30 chain 14250 chr5 181538259 + 100645771 100645923 L1HS 6032 + 5880 6032 63269 152 chain 109372 chr5 181538259 + 100656581 100657882 LTR12C 1709 + 0 1709 17130 297 0 1 352 0 278 106 0 125 65 0 4 481 chain 65132 chr5 181538259 + 100671342 100672104 L1PA5 6144 + 4459 5221 25157 169 2 1 248 0 1 343 chain 474002 chr5 181538259 + 100699905 100705654 L1PA6 6164 + 362 6013 3767 130 21 22 541 0 1 63 10 3 734 2 1 254 123 0 223 1 0 855 0 1 235 0 1 104 1 0 65 0 16 94 0 2 177 7 9 722 2 3 290 0 1 1039 0 9 56 chain 10147 chr5 181538259 + 100701667 100701783 L1PA6 6164 + 1440 1556 69756 116 chain 112553 chr5 181538259 + 100769646 100770876 L1PA3long 6157 + 4931 6157 16738 696 4 0 530 chain 88423 chr5 181538259 + 100774644 100775650 LTR13 1007 + 0 1007 19960 670 0 1 336 chain 195894 chr5 181538259 + 100783812 100787547 L1PA7 6471 + 4077 6467 9847 224 0 10 358 0 8 683 1368 0 261 0 3 84 1 2 427 1 0 62 8 12 248 2 0 8 chain 82919 chr5 181538259 + 100785192 100786417 SVA_F 1814 + 11 1794 21037 13 9 14 47 11 0 64 9 0 390 9 51 28 3 0 43 2 5 36 45 593 10 16 0 124 3 5 330 6 3 27 chain 35647 chr5 181538259 + 100822669 100823499 MER41A 554 + 0 529 37635 83 8 10 73 335 27 276 10 15 45 chain 24164 chr5 181538259 + 100841358 100841711 MER51B 395 + 0 395 50555 39 13 0 72 0 56 59 26 25 144 chain 117098 chr5 181538259 + 100881997 100883572 THE1A-int 1579 + 0 1579 16037 430 18 15 188 48 56 306 14 8 107 1 5 458 0 1 5 chain 16765 chr5 181538259 + 100892755 100893000 L1PA8 5853 + 5609 5853 60071 68 1 0 14 1 0 17 0 1 31 2 1 22 1 0 66 7 9 15 chain 74445 chr5 181538259 + 101006622 101007471 L1PA4 6152 + 4487 5345 22977 147 1 7 460 0 2 111 0 1 130 chain 225576 chr5 181538259 + 101019988 101022471 L1PA3long 6157 + 3674 6157 8871 2483 chain 79951 chr5 181538259 + 101039557 101040504 L1PA7 6471 + 5511 6458 21636 112 0 1 684 1 0 150 chain 27731 chr5 181538259 + 101053683 101053978 AluYa5 310 + 16 310 45275 288 1 0 6 chain 49926 chr5 181538259 + 101140124 101140699 L1PA4 6152 + 5277 5877 29592 22 1 2 96 1 25 455 chain 493436 chr5 181538259 + 101162859 101168731 L1PA6 6164 + 0 5898 3330 64 0 1 741 0 2 529 12 10 253 0 1 726 1 0 262 0 12 444 1 2 142 0 1 77 0 1 4 0 3 62 2 1 836 0 2 186 0 4 572 2 1 356 0 1 109 0 2 491 chain 543155 chr5 181538259 + 101180130 101186147 L1PA2 6032 + 0 6028 1127 257 1 0 440 0 7 992 14 0 356 0 2 64 0 1 737 0 4 704 0 4 397 1 0 380 0 1 1428 0 8 246 chain 118787 chr5 181538259 + 101204184 101205733 THE1A-int 1579 + 2 1560 15751 190 0 3 410 9 11 28 1 4 4 1 0 4 0 1 46 1 0 473 3 4 126 0 1 253 chain 4664 chr5 181538259 + 101206293 101206366 THE1A 353 + 275 340 87460 24 13 5 36 chain 76220 chr5 181538259 + 101290131 101290959 L1PA3long 6157 + 4697 5525 22508 828 chain 3512 chr5 181538259 + 101302509 101302550 L1PA2 6032 + 4187 4228 95152 41 chain 166561 chr5 181538259 + 101302551 101304346 L1PA2 6032 + 4233 6028 11302 1795 chain 29384 chr5 181538259 + 101315239 101315641 LTR7 482 + 0 482 42758 69 8 46 109 0 1 24 1 31 34 0 10 41 1 2 115 chain 241281 chr5 181538259 + 101315643 101318944 HERVH-int 3825 + 215 3825 8446 118 2 1 159 3 111 14 1 0 13 3 0 14 14 11 30 2 0 5 7 6 24 29 8 34 0 2 13 0 3 340 0 1 104 15 0 155 138 131 73 2 5 189 0 1 127 2 0 102 0 1 82 5 10 12 10 8 21 6 10 103 1 0 328 1 0 4 0 1 249 0 8 223 2 22 29 8 218 15 6 0 5 3 9 231 0 2 225 chain 2288 chr5 181538259 + 101320381 101320406 LTR7 482 + 264 289 104791 25 chain 9662 chr5 181538259 + 101327225 101327361 L1PB4 2604 + 2442 2570 71138 58 8 0 34 0 1 17 1 0 18 chain 470016 chr5 181538259 + 101442059 101447387 L1PA4 6152 + 6 5342 3857 221 0 1 216 7 8 305 1 5 1056 0 1 498 1 2 3023 chain 15730 chr5 181538259 + 101453925 101454142 L1PA8 5853 + 5640 5853 61372 38 6 5 10 1 0 49 1 0 20 1 0 91 chain 6217 chr5 181538259 + 101458737 101458813 MADE1 96 + 4 96 80286 25 0 16 51 chain 8531 chr5 181538259 + 101496797 101496978 MSTA 426 + 0 188 73619 48 14 8 43 8 14 16 25 32 27 chain 8817 chr5 181538259 + 101506564 101506864 LTR12C 1709 + 677 976 72958 12 78 0 45 7 85 18 1 0 46 74 74 19 chain 56053 chr5 181538259 + 101512610 101513414 MER11B 1079 + 0 785 27547 46 5 8 43 0 1 439 73 58 146 10 0 25 1 3 16 chain 169146 chr5 181538259 + 101528909 101530875 L1PA5 6144 + 0 1979 11147 234 4 5 201 0 11 249 1 2 1277 chain 219526 chr5 181538259 + 101553933 101556456 L1PA4 6152 + 2358 4891 9054 281 2 0 463 0 1 330 8 17 245 8 6 639 0 3 447 0 1 100 chain 109276 chr5 181538259 + 101556456 101557697 L1PA4 6152 + 4892 6133 17144 1241 chain 48416 chr5 181538259 + 101570125 101570652 L1PA3long 6157 + 5339 5866 30141 527 chain 121247 chr5 181538259 + 101587147 101588505 L1PA4 6152 + 3830 5187 15309 835 1 0 522 chain 12085 chr5 181538259 + 101787916 101788087 MSTA-int 1630 + 0 170 66698 12 9 8 150 chain 51317 chr5 181538259 + 101797421 101798032 L1PA7 6471 + 5856 6467 29117 611 chain 4472 chr5 181538259 + 101807094 101807187 MER52A 1651 + 785 913 88485 5 1 0 22 2 3 25 16 51 22 chain 98435 chr5 181538259 + 101808059 101809290 L1PA8 5853 + 4629 5853 18486 349 1 0 21 1 4 6 5 0 42 0 4 509 1 0 46 2 0 72 3 1 5 1 0 48 6 5 19 1 0 93 chain 57157 chr5 181538259 + 101825362 101826126 L1PB1 5432 + 3782 4554 27209 180 8 9 164 0 7 226 10 11 108 1 0 67 chain 52684 chr5 181538259 + 101826920 101827501 L1PA3long 6157 + 5571 6152 28671 581 chain 80093 chr5 181538259 + 101854341 101855269 L1PA7 6471 + 5530 6463 21609 84 1 4 94 0 1 607 0 1 142 chain 2862 chr5 181538259 + 101879772 101879823 MER67C 710 + 84 140 101147 27 7 12 17 chain 333328 chr5 181538259 + 101921117 101924817 L1PA3long 6157 + 2453 6157 6159 735 0 1 498 1 2 484 0 1 617 1 2 1364 chain 92156 chr5 181538259 + 101927394 101928400 L1PA3long 6157 + 5137 6143 19318 1006 chain 24664 chr5 181538259 + 101979480 101979847 THE1B 368 + 0 368 49780 13 2 0 24 1 6 126 20 19 103 3 0 11 0 2 64 chain 341232 chr5 181538259 + 102020511 102024812 L1PA7 6471 + 2166 6468 6043 354 0 2 572 5 9 52 0 4 229 0 4 579 0 1 413 38 12 552 0 2 219 0 1 104 17 17 131 0 1 189 4 1 171 8 9 62 0 9 415 10 14 26 0 1 133 3 0 4 1 0 10 chain 37099 chr5 181538259 + 102044030 102044493 L1PA7 6471 + 3871 4338 36678 133 7 6 200 0 2 104 0 3 19 chain 172877 chr5 181538259 + 102045134 102047585 L1PA7 6471 + 4346 6464 10957 130 0 1 74 333 0 69 4 0 52 0 2 50 2 1 187 1 2 111 0 1 300 6 7 288 1 0 708 0 1 86 7 8 35 2 0 5 chain 42420 chr5 181538259 + 102057706 102058177 L1PA4 6152 + 5680 6151 33114 471 chain 4649 chr5 181538259 + 102108674 102108757 MADE1 96 + 0 96 87535 16 5 18 5 2 0 6 0 3 7 1 0 41 chain 100417 chr5 181538259 + 102113511 102114630 L1PA5 6144 + 2357 3476 18246 1119 chain 27582 chr5 181538259 + 102117229 102117584 THE1A 353 + 0 353 45476 82 9 8 20 1 0 243 chain 565019 chr5 181538259 + 102131356 102137385 L1HS 6032 + 0 6029 96 6029 chain 98740 chr5 181538259 + 102148130 102149272 L1PA6 6164 + 5012 6162 18445 883 0 12 247 4 0 8 chain 123838 chr5 181538259 + 102154758 102156429 LTR12C 1709 + 0 1709 14875 278 0 1 14 0 1 170 9 7 28 1 0 4 2 3 224 43 0 101 0 42 193 1 0 5 0 47 90 27 20 276 1 0 50 0 2 65 5 4 84 chain 29192 chr5 181538259 + 102158781 102159331 L1PA13 3608 + 3024 3548 43056 108 8 7 21 1 0 43 8 13 51 8 6 62 1 0 56 8 5 41 21 17 13 1 0 18 27 19 14 28 18 12 chain 266028 chr5 181538259 + 102163204 102166191 L1PA4 6152 + 2235 5227 7799 565 0 1 1315 0 2 49 0 1 297 0 1 761 chain 6512 chr5 181538259 + 102168270 102168442 Tigger3 1187 + 473 648 79304 61 62 68 5 2 0 17 1 0 24 chain 496385 chr5 181538259 + 102189483 102194807 L1HS 6032 + 2 6032 3252 4227 0 4 725 0 702 372 chain 74546 chr5 181538259 + 102203048 102203973 L1PA10 4194 + 3224 4150 22944 870 0 4 18 4 1 33 chain 214496 chr5 181538259 + 102207229 102209569 L1PA2 6032 + 3689 6030 9190 476 0 2 416 1 0 1447 chain 89222 chr5 181538259 + 102244209 102245524 L1M1 2793 + 1126 2697 19819 53 1 0 72 4 0 18 7 0 93 0 2 5 1 0 370 0 4 77 0 3 187 0 4 92 64 319 11 1 0 109 11 11 14 6 11 47 1 0 46 1 0 11 1 0 12 chain 116106 chr5 181538259 + 102329390 102330663 L1PA3long 6157 + 4884 6157 16212 1273 chain 471836 chr5 181538259 + 102351321 102356992 L1PA6 6164 + 0 6156 3817 375 0 1 234 0 1 178 0 17 328 19 20 100 1 0 497 0 1 508 0 1 64 5 0 316 0 9 144 0 1 394 0 1 516 2 0 1062 0 15 115 9 8 335 2 449 313 19 18 135 chain 46224 chr5 181538259 + 102359934 102360449 L1PA3long 6157 + 3563 4078 30948 515 chain 13287 chr5 181538259 + 102369479 102369930 L1PA15 4387 + 3932 4366 64647 48 63 64 54 55 53 31 97 88 43 2 0 13 13 9 21 1 0 10 chain 55243 chr5 181538259 + 102411579 102412391 MER4E1 777 + 0 770 27795 25 7 0 222 2 1 36 29 24 39 1 0 193 50 18 128 4 8 76 chain 440354 chr5 181538259 + 102421448 102427069 L1PA8 5853 + 50 5643 4570 22 2 0 10 1 0 6 63 25 189 3 7 174 1 2 330 2 0 6 9 11 906 0 2 277 3 1 115 0 3 521 0 2 345 6 7 378 1 2 7 0 1 647 15 19 64 5 1 157 1 2 80 0 1 586 0 1 53 2 0 293 1 2 240 1 2 15 1 0 34 18 16 31 chain 143309 chr5 181538259 + 102455837 102457458 L1PA4 6152 + 3720 5347 12831 636 0 4 396 0 1 544 0 1 45 chain 9766 chr5 181538259 + 102463957 102464193 L1PB1 5432 + 5222 5430 70898 13 1 0 39 8 6 16 4 1 12 10 0 17 9 6 14 2 0 24 1 0 22 13 9 21 1 0 4 1 0 4 chain 49257 chr5 181538259 + 102492411 102493011 L1P1 4361 + 4 605 29847 172 0 1 53 0 1 5 6 5 364 chain 97371 chr5 181538259 + 102524147 102525661 L1PREC2 3366 + 1401 2854 18614 61 36 38 93 21 20 153 5 6 4 1 0 187 0 2 167 107 49 177 26 25 314 5 4 51 2 0 54 2 1 43 1 0 4 chain 3939 chr5 181538259 + 102524908 102524953 L1PREC2 3366 - 1212 1257 91843 45 chain 96158 chr5 181538259 + 102558978 102560298 L1PA11 4918 + 3219 4530 18759 241 0 4 511 7 3 76 1 0 146 7 9 124 0 4 58 1 0 4 9 8 68 2 0 12 5 4 17 4 0 12 5 0 10 chain 3549 chr5 181538259 + 102568101 102568145 MADE1 96 + 49 96 94854 22 0 3 22 chain 93699 chr5 181538259 + 102632159 102634792 L1PB 1623 + 121 1453 19082 48 4 1 17 5 6 7 0 5 64 4 3 126 1274 1 54 0 4 28 1 0 23 5 7 101 14 7 234 1 3 138 0 9 282 58 20 137 1 0 7 chain 72582 chr5 181538259 + 102632728 102633535 L1PA5 6144 + 5324 6131 23410 807 chain 27751 chr5 181538259 + 102647717 102648184 L1MA2 4263 + 3590 4047 45247 72 1 0 61 6 3 70 13 10 98 74 71 72 chain 550445 chr5 181538259 + 102671229 102677260 L1PA2 6032 + 2 6032 713 254 1 0 161 0 1 162 0 4 742 0 1 4334 6 0 371 chain 3593 chr5 181538259 + 102711566 102711614 LTR82A 830 + 0 48 94496 48 chain 19867 chr5 181538259 + 102752422 102753067 LTR12C 1709 + 871 1463 56586 241 382 329 22 chain 2741 chr5 181538259 + 102752693 102752784 LTR12C 1709 + 904 1037 72146 23 33 34 15 0 41 20 chain 28397 chr5 181538259 + 102779505 102779880 MLT2A1 477 + 0 385 44274 15 0 1 42 0 10 74 0 1 25 1 5 82 7 0 68 0 1 61 chain 4750 chr5 181538259 + 102783216 102783295 MER53 195 + 5 78 86962 23 11 5 45 chain 25906 chr5 181538259 + 102842270 102842597 THE1B 368 + 0 341 47855 44 0 15 110 1 0 172 chain 9035 chr5 181538259 + 102879259 102879382 Tigger3b 1229 + 790 925 72485 6 0 1 65 4 15 48 chain 21998 chr5 181538259 + 102908479 102908730 L1PA2 6032 + 5781 6032 53838 251 chain 14885 chr5 181538259 + 102929770 102929979 MER30 238 + 0 231 62404 13 6 23 4 1 0 68 7 13 110 chain 12410 chr5 181538259 + 102947411 102947670 L1PB1 5432 + 5192 5427 66122 28 2 1 16 1 0 44 1 0 15 53 35 15 2 0 24 1 0 21 1 4 9 1 0 18 2 0 5 chain 42113 chr5 181538259 + 102968741 102969243 L1PA7 6471 + 5961 6465 33287 10 0 1 209 1 2 282 chain 550719 chr5 181538259 + 103046752 103052769 L1PA2 6032 + 12 6032 691 372 0 1 356 0 1 2874 0 1 2415 chain 6109 chr5 181538259 + 103102902 103102985 MER119 576 + 375 464 80697 32 0 6 51 chain 27929 chr5 181538259 + 103140567 103140857 AluYd8 298 + 0 290 44985 290 chain 48016 chr5 181538259 + 103214199 103214876 L1PA15 4387 + 3636 4312 30290 177 1 7 58 0 1 9 7 5 13 0 1 25 0 2 80 0 2 88 2 1 25 1 0 55 1 0 23 4 0 8 2 1 50 6 3 42 chain 26262 chr5 181538259 + 103224949 103225375 MER57A1 433 + 15 423 47334 209 4 11 51 1 2 74 63 37 24 chain 14349 chr5 181538259 + 103306387 103306700 MER47B 469 + 62 426 63113 62 118 169 133 chain 4332 chr5 181538259 + 103332946 103332995 L1MB2 1706 + 1637 1686 89277 49 chain 2976 chr5 181538259 + 103353207 103353241 MLT1H1 527 + 23 57 100094 34 chain 7635 chr5 181538259 + 103425731 103425824 MER85 139 + 0 96 75790 60 0 3 33 chain 2879 chr5 181538259 + 103456295 103456328 Tigger2b_Pri 1066 + 970 1003 101018 33 chain 21501 chr5 181538259 + 103460407 103460767 L1MA2 4263 + 3771 4114 54509 38 4 1 11 6 1 41 1 0 41 0 2 42 19 17 82 16 9 49 1 0 9 chain 85169 chr5 181538259 + 103533172 103534231 MER11B 1079 + 27 1079 20589 74 1 0 158 3 0 250 0 1 50 36 35 97 0 1 79 8 2 282 1 3 20 chain 3929 chr5 181538259 + 103738692 103738776 MER53 195 + 9 86 91918 47 24 17 13 chain 15018 chr5 181538259 + 103772702 103772893 MER50 708 + 493 685 62244 10 1 0 12 0 1 52 0 1 116 chain 54685 chr5 181538259 + 103828730 103829390 L1PA8A 6298 + 5631 6291 27979 660 chain 38959 chr5 181538259 + 103860999 103861524 MLT2A2 560 + 0 560 35387 17 0 4 164 1 24 110 8 5 79 1 12 145 chain 50463 chr5 181538259 + 103904381 103905158 L1PA15 4387 + 3524 4252 29392 289 2 0 22 4 0 56 3 1 32 27 8 78 14 0 94 6 5 21 1 0 55 1 0 22 4 0 8 4 3 34 chain 27811 chr5 181538259 + 103985827 103986141 AluYk4 311 + 0 309 45168 126 5 0 183 chain 139136 chr5 181538259 + 103998004 103999507 L1PA2 6032 + 4528 6031 13173 1503 chain 26075 chr5 181538259 + 104031709 104032111 LTR7 482 + 0 475 47615 67 10 48 65 3 5 39 8 40 11 20 21 179 chain 289632 chr5 181538259 + 104032120 104035647 HERVH-int 3825 + 0 3825 7139 212 0 11 306 1 0 12 1 0 4 0 1 24 1 0 9 2 1 10 4 0 12 6 0 17 0 37 40 4 25 8 1 0 50 1 0 82 0 3 433 0 4 6 3 0 124 9 0 37 2 1 216 4 31 299 0 10 358 1 0 669 27 29 39 8 218 260 0 2 225 chain 24460 chr5 181538259 + 104036904 104037300 LTR7 482 + 0 469 50092 69 6 95 21 51 0 27 0 1 7 0 1 37 6 38 69 1 2 102 chain 3257 chr5 181538259 + 104040483 104040521 MLT2B3 573 + 469 507 97415 38 chain 20146 chr5 181538259 + 104083546 104083821 L1PA8 5853 + 5582 5853 56194 27 2 0 22 0 1 47 1 0 61 2 1 21 1 0 91 chain 3964 chr5 181538259 + 104173659 104173705 MLT2B3 573 + 527 573 91672 46 chain 8133 chr5 181538259 + 104181043 104181143 HUERS-P3-int 2218 + 1211 1311 74555 100 chain 250120 chr5 181538259 + 104191037 104193815 L1PA4 6152 + 3355 6139 8233 599 0 2 1350 0 4 829 chain 92764 chr5 181538259 + 104359588 104360580 L1PA2 6032 + 3109 4101 19222 992 chain 32377 chr5 181538259 + 104389891 104390276 L1PA7 6471 + 6076 6461 40056 27 0 1 33 1 0 324 chain 172614 chr5 181538259 + 104397749 104399935 L1PA7 6471 + 4287 6469 10970 76 5 6 141 0 1 60 1 0 7 0 1 16 11 12 113 0 1 234 1 0 24 1 0 290 0 1 27 0 1 55 3 4 135 0 1 4 14 1 123 1 4 19 0 1 5 1 0 241 0 1 247 1 0 175 1 0 7 1 2 146 chain 30101 chr5 181538259 + 104436646 104437113 MLT2A1 477 + 0 477 41944 4 1 0 12 0 2 31 0 11 108 3 0 194 0 4 18 62 58 8 0 1 26 chain 4217 chr5 181538259 + 104473370 104473416 MLT1B 390 + 306 352 90026 46 chain 136665 chr5 181538259 + 104489993 104491554 L1PA3long 6157 + 4594 6157 13369 48 0 5 660 6 8 570 5 0 117 0 7 1 7 0 147 chain 568026 chr5 181538259 + 104518587 104524616 L1HS 6032 + 1 6031 14 73 0 1 5956 chain 71681 chr5 181538259 + 104546473 104547552 MER11A 1151 + 0 1151 23616 78 1 9 113 1 0 30 1 0 64 0 11 23 34 0 146 16 32 26 0 12 129 15 18 11 3 4 37 0 4 67 0 1 19 5 63 94 8 7 54 2 1 32 1 0 10 3 0 56 chain 25924 chr5 181538259 + 104669107 104669404 AluYk4 311 + 0 295 47830 132 1 0 129 1 0 34 chain 33634 chr5 181538259 + 104679568 104679997 THE1B-int 1605 + 0 429 38975 33 6 5 185 0 1 205 chain 219315 chr5 181538259 + 104681825 104685185 L1PB1 5432 + 2142 5422 9059 254 4 5 45 7 6 45 0 6 79 1 6 229 26 25 165 2 1 171 0 9 860 11 145 330 1 0 98 3 0 44 0 2 38 0 2 105 6 1 27 1 0 4 11 12 226 220 32 24 8 6 14 27 12 49 3 2 16 5 4 38 2 1 16 2 0 6 1 0 10 8 0 8 17 14 12 2 0 24 1 0 14 8 7 13 1 0 18 chain 490092 chr5 181538259 + 104717754 104723233 L1PA3long 6157 + 0 6152 3420 94 0 526 72 0 15 59 10 138 1260 0 1 154 0 2 2807 0 1 1023 chain 56736 chr5 181538259 + 104747106 104747866 THE1B-int 1605 + 858 1600 27344 217 12 9 65 1 0 199 16 0 29 1 2 208 0 1 12 chain 24895 chr5 181538259 + 104747878 104748237 THE1B 368 + 6 368 49442 7 2 0 32 0 9 10 11 2 103 1 0 23 2 0 114 5 13 49 chain 22606 chr5 181538259 + 104759298 104759790 MER4B 649 + 0 547 52978 17 10 32 14 0 1 93 0 42 99 172 162 87 chain 67668 chr5 181538259 + 104782916 104783775 L1PA7 6471 + 5614 6467 24527 7 9 0 217 3 6 18 1 2 275 1 0 328 chain 120340 chr5 181538259 + 104785309 104786860 THE1A-int 1579 + 7 1574 15473 8 0 2 46 1 2 409 0 2 570 1 12 109 1 2 106 1 0 299 chain 40223 chr5 181538259 + 104794521 104794989 LTR2 463 + 0 463 34505 222 5 0 241 chain 8539 chr5 181538259 + 104808717 104808884 L1MA5A 2387 + 2169 2306 73600 12 1 0 38 3 0 14 29 4 59 1 0 10 chain 173626 chr5 181538259 + 104830007 104832062 L1PA6 6164 + 4119 6161 10915 661 0 3 130 0 1 167 0 1 718 16 1 191 19 19 65 3 0 85 chain 167594 chr5 181538259 + 104865056 104871542 HERVL-int 5654 + 181 5636 11237 942 5 6 584 4228 3196 316 16 8 192 0 8 203 chain 34015 chr5 181538259 + 104866645 104867064 HERVL-int 5654 + 5234 5654 38696 196 0 1 223 chain 32417 chr5 181538259 + 104871565 104872029 MLT2A1 477 + 5 477 40025 35 6 7 122 4 1 215 4 0 15 18 32 45 chain 91643 chr5 181538259 + 104882485 104883506 L1PA4 6152 + 5115 6136 19383 881 7 0 10 0 7 123 chain 112068 chr5 181538259 + 104928809 104930242 LTR12C 1709 + 0 1709 16803 214 32 20 230 1 0 4 0 3 179 0 119 68 1 0 192 2 168 27 0 4 333 1 0 51 28 27 70 chain 24201 chr5 181538259 + 104959061 104959406 L1PA7 6471 + 6132 6465 50496 7 2 0 146 52 42 138 chain 154119 chr5 181538259 + 105003743 105005535 L1PA5 6144 + 1161 2962 12104 4 0 1 47 7 5 332 0 2 484 0 1 515 0 1 297 0 6 106 chain 15820 chr5 181538259 + 105027843 105028207 THE1D 372 + 0 372 61258 70 57 58 34 78 86 92 1 0 32 chain 10719 chr5 181538259 + 105056448 105056633 Tigger1 2417 + 22 207 69015 28 27 26 30 5 7 4 1 0 90 chain 5179 chr5 181538259 + 105135883 105135974 MLT1B-int 1170 + 982 1071 84777 37 16 14 38 chain 160755 chr5 181538259 + 105161091 105163090 L1PA7 6471 + 4449 6470 11700 122 1 0 6 1 2 300 0 1 68 8 1 674 0 10 26 7 11 13 4 5 35 0 14 567 12 11 155 chain 20344 chr5 181538259 + 105170485 105170716 L1PA7 6471 + 5387 5619 55954 29 0 1 202 chain 68796 chr5 181538259 + 105170717 105171554 L1PA7 6471 + 5623 6466 24259 4 0 1 171 2 6 402 0 1 258 chain 458598 chr5 181538259 + 105198502 105203942 L1PA5 6144 + 620 6128 4164 5 0 1 342 0 1 200 9 0 114 0 3 294 0 65 58 1 0 233 1 0 189 0 6 176 7 0 295 2 1 500 1 4 395 1 0 171 1 0 210 0 2 902 0 2 693 1 3 179 0 3 75 1 0 252 1 3 131 chain 4110 chr5 181538259 + 105210229 105210314 MER2 342 + 132 215 90703 15 23 21 47 chain 144556 chr5 181538259 + 105221586 105223241 L1PA4 6152 + 4072 5737 12724 40 6 17 218 7 11 257 0 1 6 6 0 1115 chain 25078 chr5 181538259 + 105316460 105316723 AluYa5 310 + 34 297 49155 263 chain 31100 chr5 181538259 + 105316724 105317059 L1PA2 6032 + 5697 6032 41056 335 chain 4420 chr5 181538259 + 105370134 105370180 tRNA-Arg-CGY_ 50 + 0 46 88788 46 chain 254702 chr5 181538259 + 105415879 105420507 L1PB1 5432 + 1788 5409 8119 325 2 0 188 0 1 188 16 9 338 1 0 383 0 1 4 0 32 471 3 0 116 0 1 120 0 1 104 0 5 73 0 1 36 9 9 405 56 52 95 12 17 100 0 1 91 1029 8 136 6 20 15 1 0 13 1 0 9 6 2 11 2 0 50 1 0 18 1 0 44 1 0 15 3 0 12 10 1 14 28 23 24 1 0 21 1 0 13 1 0 5 chain 17991 chr5 181538259 + 105450074 105450406 THE1B 368 + 0 356 58666 44 29 44 79 0 1 4 10 8 18 27 44 7 7 0 107 chain 14255 chr5 181538259 + 105580318 105580482 L1PA7 6471 + 2274 2438 63259 164 chain 232669 chr5 181538259 + 105598879 105602104 L1P2 5180 + 1759 4497 8674 800 0 1 611 0 1 17 1 0 70 482 0 427 11 5 252 1 2 56 2 1 207 0 1 207 1 0 80 chain 73493 chr5 181538259 + 105605613 105606556 L1PA6 6164 + 5218 6161 23220 84 6 7 629 26 26 81 1 2 107 2 0 7 chain 15170 chr5 181538259 + 105669697 105669903 MER107 203 + 1 203 62075 107 0 2 63 3 0 3 3 0 27 chain 112667 chr5 181538259 + 105718370 105719856 L1PB1 5432 + 3389 4881 16727 338 5 8 227 6 5 647 10 12 170 12 14 71 chain 67736 chr5 181538259 + 105855034 105855783 L1PA4 6152 + 4820 5569 24511 749 chain 116466 chr5 181538259 + 105858883 105860229 SVA_C 1631 + 0 1631 16138 17 2 0 448 0 117 152 0 80 50 0 92 47 0 1 610 3 0 17 chain 55444 chr5 181538259 + 105872473 105873157 LTR30 714 + 0 714 27735 159 0 1 56 1 0 124 0 32 112 2 1 161 1 0 68 chain 2510 chr5 181538259 + 106012116 106012189 L1MC1 2226 + 2091 2151 103597 12 3 1 18 17 7 7 1 0 15 chain 82533 chr5 181538259 + 106073900 106076370 L1PB1 5432 + 3735 5410 21114 72 8 11 538 1 0 217 1 0 37 2 6 9 5 1 59 1200 434 15 1 0 13 16 11 11 4 3 45 6 5 15 2 1 43 2 1 14 28 16 15 28 23 20 1 0 21 1 0 13 1 0 6 chain 62417 chr5 181538259 + 106104897 106105758 L1PB 1623 + 433 1303 25772 52 1 0 12 20 18 266 0 1 116 0 1 211 0 1 9 1 10 17 8 7 124 1 2 23 chain 62363 chr5 181538259 + 106147001 106147690 L1PA4 6152 + 5446 6141 25785 682 0 6 7 chain 107418 chr5 181538259 + 106154124 106155501 LTR12C 1709 + 0 1709 17393 278 18 18 42 0 43 178 6 12 78 0 2 9 0 278 134 0 2 38 1 0 5 7 5 93 9 13 481 chain 104242 chr5 181538259 + 106246079 106247392 LTR12C 1709 + 0 1709 17791 16 1 0 108 1 10 204 0 43 269 0 278 155 1 48 93 0 4 29 30 48 253 1 0 67 1 0 84 chain 21147 chr5 181538259 + 106344934 106345198 THE1B-int 1605 + 16 281 54952 95 0 1 169 chain 32285 chr5 181538259 + 106359042 106359546 MER1A 529 + 44 529 40123 36 20 5 45 9 5 87 0 1 221 54 53 32 chain 4823 chr5 181538259 + 106383235 106383292 LTR43B 570 + 502 559 86589 57 chain 2765 chr5 181538259 + 106453471 106453519 HERVL40-int 1241 + 381 428 101865 14 7 6 27 chain 11280 chr5 181538259 + 106479331 106479463 L1PA8A 6298 + 6158 6290 68115 132 chain 56032 chr5 181538259 + 106510832 106511614 LTR12 884 + 0 869 27553 92 0 66 93 0 25 100 2 0 159 6 10 25 4 8 58 10 14 173 15 1 45 chain 206893 chr5 181538259 + 106561147 106564096 HERVL-int 5654 + 99 2943 9471 31 6 8 97 14 15 95 38 22 48 0 4 369 2 0 120 0 2 19 11 16 304 11 6 107 0 1 25 1 6 325 2 4 123 8 9 266 112 0 543 26 32 131 0 3 108 2 0 5 chain 40592 chr5 181538259 + 106586726 106587291 MER41A 554 + 0 548 34233 395 7 11 20 1 0 70 31 11 41 chain 10609 chr5 181538259 + 106593391 106593545 L1PA10 4194 + 4003 4150 69211 101 2 3 9 3 0 21 0 1 4 6 0 8 chain 101618 chr5 181538259 + 106637638 106638754 L1PA4 6152 + 4377 5493 18114 1116 chain 45250 chr5 181538259 + 106652836 106653410 L1PA7 6471 + 5873 6454 31448 96 6 5 339 0 1 75 1 8 57 chain 69676 chr5 181538259 + 106679448 106680299 L1PA7 6471 + 5614 6467 24078 84 0 2 433 1 2 170 19 18 144 chain 73672 chr5 181538259 + 106683550 106684367 L1PA3long 6157 + 5340 6157 23178 817 chain 32929 chr5 181538259 + 106684811 106685386 L1PB1 5432 + 4883 5427 39564 220 1 0 8 4 3 24 1 0 9 1 0 11 5 1 9 2 0 49 5 4 15 1 0 43 2 1 14 5 2 11 10 1 19 7 4 15 2 0 24 1 0 20 0 3 11 1 0 10 1 0 9 1 0 4 chain 138212 chr5 181538259 + 106695232 106696735 L1PA2 6032 + 2993 4496 13247 1503 chain 228662 chr5 181538259 + 106839898 106842699 L1PA7 6471 + 1476 4279 8783 12 0 1 72 3 1 8 1 0 189 2 0 24 2 1 4 0 1 607 9 10 233 1 2 515 0 1 5 4 3 319 1 2 11 1 0 119 1 0 7 0 1 164 0 3 414 1 2 72 chain 143529 chr5 181538259 + 106938393 106940035 L1PA5 6144 + 4501 6144 12805 111 0 1 44 0 1 908 4 4 562 2 1 11 chain 43201 chr5 181538259 + 106961918 106962446 L1PA7 6471 + 5921 6450 32646 387 1 2 140 chain 38992 chr5 181538259 + 106978587 106979038 LTR7 482 + 0 482 35362 54 2 0 211 0 31 129 0 2 55 chain 271647 chr5 181538259 + 106979040 106982405 HERVH-int 3825 + 0 3825 7673 212 4 15 99 5 112 55 47 111 14 1 0 12 2 0 39 3 44 16 2 1 49 1 0 61 1 4 379 15 0 63 2 1 396 6 33 299 0 10 280 0 1 213 0 7 594 8 218 487 chain 2670 chr5 181538259 + 106979418 106979462 HERVH-int 3825 + 604 685 88737 15 0 37 29 chain 40123 chr5 181538259 + 106983635 106984086 LTR7 482 + 0 482 34578 264 1 32 186 chain 8658 chr5 181538259 + 107142774 107142969 L1MA5A 2387 + 2106 2278 73332 51 2 0 24 2 0 6 66 47 44 chain 477757 chr5 181538259 + 107157589 107163856 L1PA8A 6298 + 43 6246 3679 15 1 0 7 4 0 5 2 0 8 19 14 8 3 0 19 20 12 8 0 1 7 2 1 9 2 1 11 2 1 7 0 1 11 82 69 8 1 0 42 12 11 29 1 0 59 2 0 14 17 14 29 1 0 88 0 13 85 22 9 19 1 2 89 1 0 8 0 1 360 17 5 74 3 0 5 0 2 144 6 5 47 5 4 1119 1 2 246 1 2 155 1 0 4 0 1 151 0 1 267 1 0 33 1 0 41 1 4 117 1 0 288 0 1 6 1 0 127 18 15 80 1 0 534 1 0 349 6 0 189 2 1 233 10 15 79 1 0 277 0 1 484 chain 29389 chr5 181538259 + 107239330 107239706 THE1C 375 + 0 375 42752 350 1 0 25 chain 4514 chr5 181538259 + 107239802 107239861 THE1C-int 1605 + 154 210 88245 11 3 0 45 chain 25581 chr5 181538259 + 107241250 107241579 THE1C 375 + 0 336 48347 19 2 0 42 0 9 266 chain 29422 chr5 181538259 + 107333463 107333807 L1PA7 6471 + 5839 6182 42706 296 1 0 47 chain 16745 chr5 181538259 + 107443627 107443876 L1PA8 5853 + 5608 5853 60103 70 6 5 11 8 7 42 1 0 15 4 3 92 chain 41140 chr5 181538259 + 107451713 107452207 L1PA8A 6298 + 5669 6175 33889 356 0 12 138 chain 9585 chr5 181538259 + 107452213 107452324 L1PA8A 6298 + 6180 6291 71292 111 chain 118628 chr5 181538259 + 107494065 107495517 LTR12C 1709 + 0 1709 15789 196 7 9 91 0 2 170 1 49 161 2 0 23 0 200 146 12 17 48 1 0 7 1 0 105 0 4 481 chain 7430 chr5 181538259 + 107630097 107630199 MER30 238 + 131 235 76308 7 2 0 58 0 3 10 0 1 25 chain 227522 chr5 181538259 + 107719929 107723038 L1PA10 4194 + 174 3228 8829 13 3 0 12 3 0 6 0 1 9 23 17 9 2 1 8 1 0 21 2 0 15 1 0 8 25 12 7 1 0 22 2 0 21 1 0 7 14 8 9 1 0 15 26 18 72 7 5 370 1 5 14 2 1 6 0 1 275 1 0 6 0 1 24 0 1 93 0 5 110 16 17 389 4 1 615 14 1 204 0 1 27 0 1 40 0 3 189 15 9 61 1 0 173 3 5 90 chain 19929 chr5 181538259 + 107788856 107789110 MLT1A0-int 1658 + 1365 1620 56479 190 0 1 64 chain 63978 chr5 181538259 + 107907509 107908209 L1PA3long 6157 + 5211 5911 25414 700 chain 463928 chr5 181538259 + 108047167 108054222 L1PA8A 6298 + 78 6291 4025 24 5 2 15 47 39 11 2 1 7 1 0 7 7 5 15 2 0 4 1 0 10 23 20 4 1 0 15 5 0 9 2 0 31 12 11 22 2 0 5 2 0 5 16 12 55 2 0 19 1 0 4 7 5 80 7 6 268 0 1 14 4 0 334 7 5 71 5 9 591 6 15 186 288 0 435 4 7 49 1 0 5 1 0 323 0 23 59 0 1 221 0 12 12 2 1 178 6 5 12 7 6 102 39 9 11 6 5 172 0 1 209 1 0 179 3 0 43 6 7 4 1 0 171 465 0 180 5 6 78 0 8 190 1 2 83 0 1 256 3 2 206 1 2 29 0 1 168 1 3 88 69 0 86 0 2 623 chain 3503 chr5 181538259 + 108074030 108074158 LTR49 580 + 347 482 95218 14 29 21 28 28 43 8 0 1 6 1 0 14 chain 7100 chr5 181538259 + 108077714 108077876 LTR49-int 1717 + 1481 1627 77266 61 2 0 19 50 38 7 1 0 13 1 0 8 chain 10631 chr5 181538259 + 108142854 108142978 L1PA7 6471 + 6330 6454 69172 124 chain 24707 chr5 181538259 + 108154321 108154607 AluSp 311 + 10 299 49715 81 0 3 205 chain 46421 chr5 181538259 + 108216650 108217331 LTR25 836 + 1 794 30872 49 1 2 257 0 1 63 5 0 9 1 4 43 0 2 5 6 114 91 14 13 78 5 7 19 8 9 27 chain 108639 chr5 181538259 + 108229155 108230717 L1PB1 5432 + 3915 5427 17228 77 1 0 34 12 1 25 3 5 569 3 0 73 10 9 168 1 0 227 24 22 15 1 0 6 1 0 12 5 1 9 2 0 52 2 1 15 1 0 44 1 0 16 25 13 17 3 1 4 1 0 15 2 0 24 1 0 19 17 15 15 1 0 4 1 0 4 chain 66908 chr5 181538259 + 108231500 108232404 HERVL-int 5654 + 4763 5654 24720 109 5 8 132 2 3 32 42 20 193 0 1 16 1 4 149 0 1 223 chain 29657 chr5 181538259 + 108232404 108232774 MLT2A1 477 + 0 379 42423 15 0 4 121 0 1 27 1 5 206 chain 21485 chr5 181538259 + 108336990 108337274 AluSc 308 + 10 298 54531 14 10 15 218 2 1 40 chain 490928 chr5 181538259 + 108398474 108405696 L1PA7 6471 + 0 6469 3396 215 0 1 188 9 0 47 9 8 13 1 2 87 10 13 47 4 5 609 0 4 28 0 1 61 0 2 22 0 1 39 0 3 19 1 3 631 8 43 82 0 1 353 3 10 86 4 16 4 0 1 57 517 0 801 535 207 309 0 13 487 0 2 86 0 2 67 13 17 254 2 0 6 0 2 30 7 8 174 0 3 44 0 1 399 0 3 628 0 1 208 3 0 15 chain 16184 chr5 181538259 + 108402770 108402964 L1PA7 6471 - 2751 2945 60467 194 chain 498641 chr5 181538259 + 108436967 108444638 L1PA7 6471 + 0 6462 3173 243 0 1 8 0 7 146 4 0 68 1 0 104 3 0 38 1 0 125 0 5 56 10 75 376 8 27 282 1 0 173 0 5 948 0 1 314 6 5 60 0 3 142 2 14 65 19 21 217 5 2 47 0 3 423 10 12 394 0 2 7 1338 7 253 0 2 200 1 2 66 3 0 676 0 4 577 0 5 251 chain 26713 chr5 181538259 + 108452745 108453111 THE1B 368 + 0 368 46670 103 8 9 57 1 0 23 2 0 114 0 4 58 chain 124184 chr5 181538259 + 108453156 108454689 THE1B-int 1605 + 45 1605 14816 387 0 25 283 6 8 533 0 1 257 1 0 66 chain 165487 chr5 181538259 + 108475009 108477832 L1PB3 3668 + 4 2504 11380 14 21 16 20 31 22 35 3 0 5 26 21 152 2 0 67 1 2 46 55 60 115 0 4 72 11 14 37 0 1 45 1 0 4 0 1 19 2 3 54 0 4 37 0 1 4 2 0 90 1 4 10 11 13 27 0 1 26 37 21 137 32 31 12 0 1 10 0 8 130 2 0 91 319 0 137 0 1 141 0 1 4 1 0 56 0 1 282 3 0 222 0 2 103 0 5 58 chain 450924 chr5 181538259 + 108491419 108496559 L1PA5 6144 + 976 6139 4371 432 1 6 745 0 1 999 0 11 103 6 7 1731 0 1 30 0 1 958 0 1 27 0 1 95 0 1 13 chain 20131 chr5 181538259 + 108499707 108500000 MSTA-int 1630 + 0 283 56219 12 0 1 168 9 11 62 13 0 29 chain 81902 chr5 181538259 + 108525512 108526568 MER11C 1089 + 0 1073 21265 246 0 9 19 2 1 42 0 4 61 6 5 147 37 38 111 5 9 45 0 1 335 chain 4014 chr5 181538259 + 108541449 108541500 L1MB3 1562 + 1471 1522 91346 51 chain 127031 chr5 181538259 + 108551800 108553307 HERVH-int 3825 + 2101 3816 14415 243 1 0 559 2 1 216 8 218 478 chain 41134 chr5 181538259 + 108554567 108555018 LTR7 482 + 0 482 33892 247 0 31 204 chain 31812 chr5 181538259 + 108589864 108590308 MLT2A1 477 + 0 477 40486 167 6 3 107 1 0 13 0 1 94 7 43 10 7 7 32 chain 53479 chr5 181538259 + 108608622 108610216 MER4E1 777 + 0 770 28404 209 11 1 167 2 4 45 309 0 95 58 64 81 513 0 104 chain 126212 chr5 181538259 + 108612000 108613574 THE1B-int 1605 + 0 1597 14522 430 1 26 48 5 3 1090 chain 5461 chr5 181538259 + 108697132 108697241 MER58A 224 + 50 215 83398 33 27 81 9 0 1 35 0 1 5 chain 22549 chr5 181538259 + 108805053 108805400 THE1B 368 + 0 368 53044 77 19 33 62 11 10 16 0 1 88 8 7 37 0 8 29 chain 123184 chr5 181538259 + 108805400 108806963 THE1B-int 1605 + 0 1605 14996 428 6 31 72 0 1 10 0 10 98 0 1 868 0 5 69 1 0 6 0 1 5 chain 7411 chr5 181538259 + 108891436 108891544 HY1 111 + 0 111 76362 13 9 12 86 chain 35718 chr5 181538259 + 108974940 108975416 L1PA8 5853 + 5370 5853 37589 36 0 12 146 1 0 44 2 0 74 2 1 8 4 5 44 2 1 19 1 0 93 chain 21302 chr5 181538259 + 108997163 108997433 AluY 311 + 40 299 54761 78 11 0 15 1 0 97 0 1 68 chain 267389 chr5 181538259 + 109000432 109003451 L1PA4 6152 + 2916 5976 7778 677 0 22 107 1 0 722 0 12 704 0 1 121 0 4 18 0 4 222 2 0 308 0 1 137 chain 4113 chr5 181538259 + 109017019 109017066 MLT1B 390 + 327 374 90686 47 chain 5075 chr5 181538259 + 109032475 109032535 LTR16C 481 + 421 481 85277 60 chain 68717 chr5 181538259 + 109171890 109172646 L1PA3long 6157 + 5403 6157 24279 749 2 0 5 chain 568189 chr5 181538259 + 109259387 109265418 L1HS 6032 + 0 6032 12 74 0 1 5957 chain 52107 chr5 181538259 + 109268299 109268909 L1PA5 6144 + 5530 6144 28839 156 1 0 42 0 1 399 1 5 11 chain 48627 chr5 181538259 + 109272888 109273465 L1PA7 6471 + 5887 6466 30078 265 0 1 152 3 5 6 2 0 73 0 1 76 chain 219601 chr5 181538259 + 109291925 109295305 L1PA13 3608 + 94 3486 9053 15 6 4 23 5 2 16 10 9 14 3 0 25 25 17 71 2 0 14 0 2 106 2 1 13 0 2 17 2 0 12 16 12 12 1 0 17 2 0 15 4 3 10 12 11 29 0 14 51 2 0 49 4 3 27 11 0 24 4 9 93 0 3 205 1 3 60 1 0 40 1 35 66 2 0 9 9 9 9 0 2 31 0 3 65 4 1 129 5 11 248 0 1 9 4 6 102 11 15 15 13 7 28 0 3 5 0 4 102 0 4 173 11 2 163 13 18 4 1 0 111 1 0 19 0 1 30 0 2 5 11 16 232 18 0 144 10 11 10 8 12 18 1 0 95 1 0 28 1 0 12 6 5 31 7 11 52 6 4 60 1 0 57 5 2 49 2 0 5 2 0 19 1 0 19 chain 4708 chr5 181538259 + 109296948 109297020 L1PB3 3668 + 3495 3564 87203 8 1 0 25 3 1 35 chain 20018 chr5 181538259 + 109311712 109312019 L1PA8 5853 + 5562 5848 56367 48 2 0 69 1 0 14 19 3 43 3 2 14 9 8 85 chain 13296 chr5 181538259 + 109324248 109324452 MER30 238 + 8 232 64625 95 7 0 9 2 26 15 1 7 32 3 0 40 chain 141579 chr5 181538259 + 109340679 109343277 SVA_F 1814 + 11 1565 12975 877 1 0 60 3 18 221 1058 0 378 chain 25707 chr5 181538259 + 109341841 109342303 SVA_F 1814 + 1011 1274 44217 2 49 0 197 150 0 64 chain 2020 chr5 181538259 + 109341845 109341892 SVA_F 1814 + 1093 1140 78183 47 chain 2409 chr5 181538259 + 109342089 109342115 SVA_F 1814 + 985 1011 77463 26 chain 6794 chr5 181538259 + 109342115 109342239 SVA_F 1814 + 962 1034 55337 71 52 0 1 chain 2211 chr5 181538259 + 109342186 109342211 SVA_F 1814 + 920 943 83727 17 2 0 6 chain 2576 chr5 181538259 + 109342211 109342238 SVA_F 1814 + 1182 1209 73047 27 chain 10520 chr5 181538259 + 109342303 109342495 SVA_F 1814 + 1098 1192 55337 29 98 0 65 chain 3763 chr5 181538259 + 109342332 109342374 SVA_F 1814 + 1000 1043 77050 38 0 1 4 chain 4332 chr5 181538259 + 109342374 109342423 SVA_F 1814 + 993 1043 77359 45 0 1 4 chain 3753 chr5 181538259 + 109342495 109342536 SVA_F 1814 + 1143 1183 72420 34 1 0 6 chain 16395 chr5 181538259 + 109342536 109342712 SVA_F 1814 + 1006 1181 60529 170 1 0 5 chain 17257 chr5 181538259 + 109342713 109342898 SVA_F 1814 + 1005 1187 59505 165 3 0 17 chain 38563 chr5 181538259 + 109358041 109358543 MER9a2 513 + 0 494 35668 16 1 0 82 22 13 19 7 0 77 1 10 277 chain 45108 chr5 181538259 + 109397895 109398409 L1PA5 6144 + 5223 5767 31523 68 0 4 148 1 0 77 0 27 220 chain 115282 chr5 181538259 + 109414316 109415844 THE1B-int 1605 + 0 1600 16344 232 0 26 172 1 26 134 1 13 50 11 10 401 0 1 23 18 17 97 7 8 357 0 8 20 0 1 4 chain 8114 chr5 181538259 + 109423833 109423922 MER84 505 + 0 89 74603 89 chain 470939 chr5 181538259 + 109457256 109462596 L1PA4 6152 + 0 5355 3828 52 0 1 1095 0 1 2049 0 5 1016 0 8 190 1 2 882 1 0 54 chain 7529 chr5 181538259 + 109518947 109519061 Tigger1 2417 + 2242 2355 76054 9 2 0 69 2 1 5 0 1 7 0 1 20 chain 63125 chr5 181538259 + 109531865 109532547 L1PA2 6032 + 5349 6031 25597 682 chain 65621 chr5 181538259 + 109534810 109535540 L1PA4 6152 + 5353 6084 25049 584 0 1 146 chain 441341 chr5 181538259 + 109538803 109544134 L1PA7 6471 + 1111 6469 4547 83 0 11 38 5 2 390 1 4 114 1 0 120 0 1 575 0 2 147 7 0 43 26 4 1064 4 8 85 0 12 175 0 6 264 1 0 4 0 1 406 0 8 276 0 1 10 0 1 246 0 1 150 1 6 164 3 11 80 1 0 661 1 0 47 0 1 10 1 2 109 3 0 15 chain 8036 chr5 181538259 + 109661217 109661326 L1MA8 2339 + 1931 2037 74787 22 2 0 56 1 0 28 chain 5307 chr5 181538259 + 109699376 109699487 L1MA8 2339 + 2160 2265 84159 33 8 2 10 14 15 37 1 0 8 chain 5457 chr5 181538259 + 109740933 109740999 MADE2 80 + 0 66 83417 66 chain 4014 chr5 181538259 + 109763618 109763663 L1PA3long 6157 + 5842 5887 91357 45 chain 2060 chr5 181538259 + 109861397 109861476 MADE1 96 + 0 96 106007 23 5 22 51 chain 3707 chr5 181538259 + 109953412 109953518 MER5A 189 + 37 146 93562 28 50 53 28 chain 11631 chr5 181538259 + 110005993 110006129 MER11A 1151 + 1004 1144 67514 103 0 4 33 chain 61270 chr5 181538259 + 110014114 110014822 L1PA5 6144 + 5436 6144 26045 708 chain 20186 chr5 181538259 + 110025555 110025925 L1PA15 4387 + 3830 4200 56157 47 0 3 10 5 3 39 1 0 62 3 4 38 1 0 6 3 5 27 0 1 9 26 25 20 2 1 36 1 2 5 1 0 10 1 0 17 chain 40056 chr5 181538259 + 110106096 110106630 MER41A 554 + 14 547 34617 245 8 10 84 1 0 40 6 4 150 chain 15898 chr5 181538259 + 110140287 110140481 L1PA6 6164 + 5954 6149 61159 56 0 1 138 chain 19430 chr5 181538259 + 110171044 110171354 THE1C 375 + 0 314 57103 113 4 5 68 26 27 66 13 15 20 chain 76767 chr5 181538259 + 110187964 110188964 L1PA7 6471 + 3618 4595 22381 32 0 7 267 20 7 22 0 16 29 33 0 597 chain 57417 chr5 181538259 + 110237348 110237999 L1PA4 6152 + 4258 4914 27126 90 0 4 372 0 1 189 chain 16142 chr5 181538259 + 110249222 110249420 Tigger3a 397 + 126 324 60825 198 chain 68038 chr5 181538259 + 110317738 110318510 L1PA5 6144 + 5373 6144 24451 753 1 0 18 chain 39937 chr5 181538259 + 110412999 110413539 MLT2A2 560 + 0 553 34710 120 0 1 58 2 1 185 3 5 29 8 19 135 chain 70610 chr5 181538259 + 110510583 110511454 L1PA7 6471 + 5599 6469 23843 19 4 3 107 1 2 576 2 3 150 2 0 10 chain 206623 chr5 181538259 + 110531333 110533872 HERVH-int 3825 + 0 3825 9481 89 0 5 206 9 1041 338 10 37 589 0 1 38 1 0 57 4 7 662 9 11 27 12 222 23 6 0 5 3 9 9 0 4 59 3 0 6 1 4 49 0 2 197 1 2 126 chain 23636 chr5 181538259 + 110535117 110535513 LTR7 482 + 0 482 51371 49 28 66 97 20 52 50 0 10 62 3 7 26 12 14 49 chain 30840 chr5 181538259 + 110554065 110554511 MLT2A1 477 + 4 477 41274 166 4 1 8 0 1 24 0 1 58 13 11 111 10 0 8 17 57 27 chain 15460 chr5 181538259 + 110593526 110593947 L1MA3 4352 + 3936 4332 61711 45 22 24 67 114 92 22 0 1 5 1 0 8 0 1 49 11 9 23 1 0 6 1 0 19 11 10 11 1 0 4 chain 450742 chr5 181538259 + 110594711 110603297 L1PA8 5853 + 108 5853 4376 114 13 25 27 0 4 6 3 0 21 0 4 309 1 2 59 1 0 5 0 1 861 2891 0 46 3 0 431 1 3 114 0 4 24 2 0 295 0 1 17 0 4 338 0 1 58 1 0 316 0 4 19 0 4 9 11 5 156 1 4 78 0 1 164 0 1 39 0 1 100 0 4 269 3 10 940 0 4 67 2 0 304 0 2 181 1 0 43 3 1 71 1 0 61 2 1 9 19 27 76 chain 258265 chr5 181538259 + 110596146 110599021 L1PA3long 6157 + 3276 6157 8016 411 0 1 4 1 0 663 5 7 690 0 1 235 0 4 98 1 0 767 chain 6483 chr5 181538259 + 110635696 110636007 L1MA4A 3247 + 2897 3169 79397 14 9 0 11 5 0 17 20 8 16 72 72 55 71 58 21 chain 85797 chr5 181538259 + 110655112 110656057 L1PA3long 6157 + 5204 6149 20490 96 1 0 798 0 1 50 chain 254147 chr5 181538259 + 110668594 110691156 L1PA7 6471 + 2923 6470 8131 561 1 2 5 1 0 6 1 0 339 5 4 1005 19001 0 104 1 0 36 1 0 632 1 4 25 0 9 109 12 12 512 20 21 87 27 5 57 2 1 11 chain 67847 chr5 181538259 + 110671090 110671902 L1PA7 6471 + 5651 6464 24484 202 0 1 277 0 1 83 0 2 242 3 0 5 chain 468013 chr5 181538259 + 110692314 110697643 L1PA4 6152 + 0 5335 3910 526 4 0 1903 0 3 871 0 1 302 1 0 332 1 2 407 0 4 134 0 2 848 chain 22064 chr5 181538259 + 110712129 110712536 L1MA2 4263 + 3294 3700 53744 109 11 12 52 18 23 77 2 0 17 68 64 14 1 0 38 chain 375700 chr5 181538259 + 110774613 110778728 L1PA2 6032 + 1918 6032 5559 1276 1 0 2838 chain 14354 chr5 181538259 + 110780708 110780877 L1PA6 6164 + 1614 1785 63104 133 0 1 4 0 1 32 chain 61140 chr5 181538259 + 110789810 110790541 L1PA7 6471 + 4077 4812 26076 594 7 11 130 chain 23415 chr5 181538259 + 110800793 110801126 MER51B 395 + 0 336 51735 34 18 5 30 4 21 155 1 0 91 chain 81226 chr5 181538259 + 110856585 110857576 L1PA7 6471 + 5467 6467 21385 155 2 0 78 0 2 298 1 0 23 7 7 106 0 1 175 1 10 145 chain 167753 chr5 181538259 + 110884414 110887043 MER57-int 2662 + 41 2322 11230 29 52 32 5 0 1 196 11 9 90 0 2 411 2 0 145 320 0 122 0 1 8 4 0 108 0 1 108 0 3 90 1 0 3 1 0 34 0 1 249 0 1 15 0 1 135 17 0 64 8 4 50 13 17 74 0 7 11 30 31 223 chain 10239 chr5 181538259 + 110892896 110893041 MER57-int 2662 + 2334 2473 69921 90 18 12 37 chain 179878 chr5 181538259 + 110906160 110908248 L1PA5 6144 + 4056 6142 10591 976 0 2 260 1 0 695 1 2 144 4 0 7 chain 535138 chr5 181538259 + 110933989 110940112 L1PA4 6152 + 8 6152 1614 266 0 1 460 1 0 284 4 5 32 8 9 390 0 1 215 1 0 511 0 2 987 1 0 318 1 0 860 0 3 274 0 1 674 1 0 197 0 11 632 0 5 6 chain 16165 chr5 181538259 + 110960319 110960517 L1PA7 6471 + 6266 6465 60795 19 1 2 178 chain 32877 chr5 181538259 + 110984589 110984961 L1PA3long 6157 + 5767 6146 39605 245 0 7 127 chain 420662 chr5 181538259 + 110985746 110990772 L1PA5 6144 + 3 5168 4872 107 1 11 26 16 13 209 0 4 187 10 9 122 7 0 63 9 137 1303 0 2 1057 0 4 963 1 3 945 chain 44647 chr5 181538259 + 110991769 110992451 L1PA11 4918 + 3902 4567 31765 194 13 14 120 0 4 94 4 0 54 12 12 18 1 0 62 6 4 9 4 3 12 3 0 6 18 12 15 8 4 15 1 0 13 chain 38843 chr5 181538259 + 110999333 110999912 LTR10E 629 + 0 629 35472 28 0 1 66 26 79 122 4 3 25 0 3 52 1 0 154 1 0 10 30 27 52 1 0 7 chain 518050 chr5 181538259 + 111029735 111035679 L1PA4 6152 + 1 5976 2365 103 0 2 338 16 17 1322 0 2 244 0 1 356 0 4 304 0 5 117 0 14 377 2 0 732 5 1 281 1 3 918 0 1 161 2 6 649 0 1 16 chain 115283 chr5 181538259 + 111039208 111040480 L1PA3long 6157 + 4884 6157 16342 961 0 1 311 chain 28749 chr5 181538259 + 111138797 111139105 L1HS 6032 + 5724 6032 43708 308 chain 170354 chr5 181538259 + 111139354 111142114 L1PB2 3958 + 1385 3812 11091 172 50 42 85 0 6 331 0 1 121 1 2 28 0 1 68 3 7 11 331 0 126 1 0 95 1 0 4 16 7 83 0 2 11 0 2 58 0 1 69 0 1 129 6 12 64 1 0 238 0 9 63 0 1 72 2 0 56 5 4 72 18 12 41 1 0 18 4 0 42 17 6 7 0 12 34 7 6 64 1 0 53 1 2 5 1 0 12 2 0 59 chain 6567 chr5 181538259 + 111149232 111149328 LTR47A 437 + 332 429 79091 61 10 11 25 chain 36049 chr5 181538259 + 111181817 111182215 L1PA2 6032 + 5634 6032 37384 398 chain 28088 chr5 181538259 + 111267434 111267731 AluYd8 298 + 0 297 44736 297 chain 565806 chr5 181538259 + 111302238 111308262 L1HS 6032 + 7 6031 75 6024 chain 44821 chr5 181538259 + 111328940 111329457 L1PA4 6152 + 3700 4218 31687 49 0 1 468 chain 9383 chr5 181538259 + 111330591 111330739 MER2 342 + 182 328 71737 109 21 19 18 chain 9631 chr5 181538259 + 111415807 111415996 MER2 342 + 58 278 71194 11 0 2 9 24 52 85 18 19 42 chain 110609 chr5 181538259 + 111429823 111431704 L1MA1 4479 + 2413 4190 16992 66 1 4 26 12 2 159 1 0 96 7 5 33 1 0 57 7 5 37 0 6 49 1 0 25 2 0 87 14 22 46 32 29 11 8 4 69 1 0 12 5 0 34 19 18 70 20 17 118 3 0 46 2 0 11 21 0 4 0 1 7 7 0 61 42 14 51 1 0 21 5 3 16 1 0 71 1 0 15 9 7 5 1 0 71 0 1 22 1 0 5 11 8 118 1 0 27 2 0 34 1 0 12 1 0 5 3 0 16 6 0 18 chain 193258 chr5 181538259 + 111465218 111467895 L1PB1 5432 + 2331 5011 9962 96 6 1 6 0 5 52 5 0 44 0 1 4 14 13 4 0 1 262 4 3 17 1 2 87 0 4 80 0 1 37 0 1 4 1 0 471 0 2 198 2 5 40 2 0 53 9 14 45 7 8 59 6 5 103 0 5 105 6 7 29 0 2 167 4 5 66 10 5 16 0 1 37 19 9 107 3 0 94 6 5 272 2 5 15 chain 5992 chr5 181538259 + 111555896 111555976 MADE1 96 + 0 96 81115 32 1 17 47 chain 7976 chr5 181538259 + 111590855 111591196 MER67C 710 + 0 236 74935 68 0 59 9 223 59 41 chain 166312 chr5 181538259 + 111592201 111594216 L1PA7 6471 + 4453 6466 11316 243 0 1 4 5 4 792 1 0 124 0 3 417 0 2 264 13 13 138 6 0 8 chain 2403 chr5 181538259 + 111596326 111596368 MER52A 1651 + 785 827 104146 6 1 0 22 1 2 12 chain 113030 chr5 181538259 + 111626366 111627878 THE1B-int 1605 + 5 1594 16671 290 0 1 45 7 0 20 17 98 64 1 0 106 1 9 353 11 8 300 3 0 72 10 11 212 chain 27045 chr5 181538259 + 111638851 111639224 THE1C 375 + 0 375 46207 50 1 0 53 9 11 68 3 4 189 chain 111981 chr5 181538259 + 111639242 111640756 THE1C-int 1605 + 17 1593 16819 78 0 57 13 4 1 21 1 0 140 0 6 51 1 0 61 4 11 76 0 1 104 6 8 105 22 16 36 0 1 173 2 0 196 8 9 412 chain 24487 chr5 181538259 + 111641318 111641613 AluSc 308 + 0 292 50052 85 3 0 207 chain 40616 chr5 181538259 + 111818988 111819519 LTR10A 586 + 0 565 34208 231 39 68 240 0 5 21 chain 39174 chr5 181538259 + 111826080 111826650 LTR12_ 688 + 0 680 35232 139 1 0 5 0 1 101 37 40 95 0 103 126 5 9 61 chain 551946 chr5 181538259 + 111880843 111886987 L1PA3long 6157 + 6 6157 609 477 1 0 70 1 0 486 0 1 810 0 4 540 0 4 2290 0 4 613 1 2 836 3 0 9 2 0 5 chain 43388 chr5 181538259 + 111914166 111914675 LTR10C 591 + 0 510 32517 139 0 1 370 chain 4748 chr5 181538259 + 111915163 111915375 LTR16A2 485 + 172 452 86975 33 95 125 20 34 72 30 chain 216891 chr5 181538259 + 111917179 111919865 L1PA7 6471 + 3778 6453 9121 427 0 1 368 1 0 4 0 1 7 0 1 132 0 1 102 3 4 230 4 0 436 30 10 89 0 1 7 1 0 22 1 0 90 0 6 113 11 14 307 0 1 301 chain 25319 chr5 181538259 + 111921708 111922066 THE1A 353 + 0 353 48757 82 10 6 20 1 0 94 1 0 131 4 5 15 chain 45923 chr5 181538259 + 111950187 111950816 L1PA8A 6298 + 4975 5592 31093 50 10 5 330 0 1 92 11 12 24 20 11 92 chain 4803 chr5 181538259 + 111967645 111967713 SVA_F 1814 + 557 661 86686 23 4 40 41 chain 45944 chr5 181538259 + 111978818 111979341 L1PA5 6144 + 5621 6144 31084 523 chain 83264 chr5 181538259 + 111994192 111995217 L1PA7 6471 + 5439 6464 20972 187 1 4 263 19 15 86 0 1 469 chain 59700 chr5 181538259 + 112031093 112031749 L1PA3long 6157 + 4360 5016 26460 656 chain 89171 chr5 181538259 + 112031750 112032739 L1PA3long 6157 + 5018 6007 19827 989 chain 12386 chr5 181538259 + 112032739 112032881 L1PA3long 6157 + 6008 6150 66166 142 chain 182553 chr5 181538259 + 112037233 112039475 L1PA7 6471 + 4160 6417 10466 26 0 13 282 0 4 89 1 0 4 0 1 405 0 1 48 0 1 75 19 0 446 0 4 62 13 25 61 1 0 710 chain 28287 chr5 181538259 + 112041798 112042105 AluYa5 310 + 1 304 44438 125 4 0 178 chain 27938 chr5 181538259 + 112055535 112055916 THE1C 375 + 0 375 44970 70 0 1 43 9 6 36 6 4 119 1 0 71 1 0 25 chain 52230 chr5 181538259 + 112055916 112056754 L1PA14 3548 + 2450 3285 28807 76 11 10 152 1 0 32 9 11 32 6 1 6 0 3 55 0 3 88 3 0 14 36 40 18 18 14 105 2 0 5 2 0 8 0 1 4 14 17 76 1 0 64 chain 4424 chr5 181538259 + 112058491 112058592 MER5A 189 + 59 166 88770 28 38 44 35 chain 41175 chr5 181538259 + 112246437 112247020 PRIMA4_LTR 623 + 0 623 33855 178 10 33 24 1 0 25 0 10 92 0 1 4 0 4 103 13 14 58 7 9 68 chain 90009 chr5 181538259 + 112360329 112361533 SVA_F 1814 + 38 1814 19682 111 10 0 251 5 44 33 0 40 139 50 10 35 0 40 52 6 502 134 1 3 362 3 8 12 chain 4017 chr5 181538259 + 112383938 112384046 L1MB8 1703 + 1432 1544 91321 19 49 53 40 chain 519137 chr5 181538259 + 112390080 112396256 L1PA6 6164 + 4 6162 2308 496 15 14 697 12 8 104 2 0 329 1 3 116 0 4 146 0 1 165 10 11 4 1 0 223 14 0 864 0 1 337 1 2 297 0 1 906 5 1 562 1 0 12 0 1 249 1 0 31 0 2 18 1 0 59 0 1 130 1 0 39 3 0 324 chain 16384 chr5 181538259 + 112402033 112402384 MSTA 426 + 0 426 60538 93 20 44 31 0 6 29 60 65 21 7 28 49 16 35 25 chain 454561 chr5 181538259 + 112436293 112442124 L1PA8 5853 + 50 5850 4273 22 2 0 10 1 0 6 28 20 193 30 34 60 13 14 4 1 0 183 0 4 17 0 4 384 7 8 126 1 0 209 0 1 253 21 2 159 0 1 254 13 0 617 0 1 38 1 2 193 9 5 40 1 2 153 3 7 779 5 0 214 2 3 143 15 13 634 1 0 133 1 3 467 1 5 94 1 0 46 2 0 11 0 3 54 12 10 52 2 1 19 1 0 90 chain 64472 chr5 181538259 + 112443691 112444458 LTR17 781 + 0 781 25316 116 0 4 179 10 0 28 0 1 105 3 0 283 0 22 43 chain 373534 chr5 181538259 + 112446086 112450410 HERV17-int 4347 + 12 4345 5596 15 1 0 51 2 1 34 2 0 25 2 1 85 0 2 425 1 0 674 0 4 1253 0 2 277 0 2 223 0 1 53 4 1 572 0 9 320 2 0 303 chain 61998 chr5 181538259 + 112450726 112451491 LTR17 781 + 0 773 25869 308 8 0 19 0 1 23 9 24 398 chain 423431 chr5 181538259 + 112504027 112509495 L1PA8 5853 + 116 5701 4833 47 2 1 4 2 0 26 0 7 68 15 16 16 20 24 244 0 10 72 1 0 31 0 3 5 6 3 26 33 34 449 4 0 8 1 5 308 0 2 126 1 0 254 0 2 176 1 2 53 0 37 239 0 3 68 0 4 249 2 3 165 8 10 23 0 4 8 4 0 261 0 1 183 1 2 4 1 0 206 0 6 83 0 1 549 0 1 364 0 4 389 0 2 125 0 1 156 0 35 78 14 15 145 1 0 48 2 0 69 1 0 9 2 1 12 chain 35154 chr5 181538259 + 112523902 112524344 LTR2 463 + 0 463 37922 162 7 29 4 1 0 268 chain 512094 chr5 181538259 + 112525106 112532173 HERVE_a-int 7009 + 135 6997 2662 21 3 0 30 2 0 73 2 0 6 17 15 9 1 0 5 2 1 6 1 0 9 1 0 13 36 28 4 1 0 5 1 0 14 6 0 4 22 0 35 4 2 25 1 0 42 2 1 21 1 0 54 1 0 33 1 0 99 1 0 12 2 1 10 6 5 32 2 1 12 1 0 53 2 0 27 1 0 68 1 0 25 1 0 8 1 0 72 5 4 27 4 3 40 2 0 14 1 0 52 1 0 21 1 0 15 8 6 14 4 0 16 1 0 8 2 1 15 1 0 22 1 0 4 2 1 7 1 0 10 2 1 4 1 0 5 1 0 51 8 6 57 1 0 23 1 0 16 1 0 115 1 0 19 1 0 20 2 1 11 1 0 10 8 7 10 2 1 4 1 0 18 1 0 43 1 0 38 2 1 56 6 4 37 13 11 30 2 1 44 1 0 23 1 0 16 1 0 25 2 1 11 1 0 94 3 2 24 6 4 29 40 33 5 1 0 143 2 1 14 1 0 38 1 0 168 1 0 405 1 0 90 1 0 134 0 1 287 0 2 71 1 0 164 0 1 4 1 0 677 1 0 906 9 0 114 6 5 21 1 0 4 7 6 73 1 0 7 1 0 41 1 0 24 2 1 85 2 1 11 1 0 258 2 0 102 1 0 16 4 2 56 3 1 18 1 0 13 1 0 81 2 0 136 1 0 45 1 0 25 18 16 16 8 5 7 1 0 29 10 9 20 1 0 47 1 0 4 1 0 27 7 5 48 7 6 11 4 0 21 8 5 53 2 0 29 1 0 30 1 0 6 3 1 13 1 0 17 1 0 7 2 0 34 4 2 12 37 29 23 2 0 6 chain 34729 chr5 181538259 + 112532191 112532633 LTR2 463 + 0 463 38203 162 8 29 4 1 0 69 0 1 198 chain 11578 chr5 181538259 + 112534389 112534533 MLT2A2 560 + 7 163 67611 11 1 13 132 chain 516777 chr5 181538259 + 112538668 112545103 L1PA7 6471 + 15 6468 2434 394 3 0 129 4 5 104 0 1 209 0 1 128 1 0 18 0 2 199 1 0 38 5 11 10 7 1 171 0 1 321 0 1 717 3 4 157 1 2 199 2 0 346 3 0 218 0 1 4 0 1 76 1 2 8 1 0 3 2 0 108 2 1 703 0 1 183 0 1 276 1 7 221 0 1 610 8 11 72 0 1 33 13 14 98 0 5 9 3 0 5 0 4 607 chain 303411 chr5 181538259 + 112586045 112590543 L1P2 5180 + 5 4243 6757 23 5 6 112 5 4 90 14 23 54 6 0 7 238 37 85 19 0 11 196 137 145 25 4 44 2 17 236 4 5 4 1 0 179 0 1 19 1 2 418 0 1 650 1 0 223 10 0 5 0 3 25 0 4 208 0 4 724 0 1 53 0 1 133 9 34 179 1 2 145 11 1 147 0 1 31 chain 67658 chr5 181538259 + 112590543 112591364 L1PA7 6471 + 5648 6468 24469 204 8 9 598 2 0 9 chain 13279 chr5 181538259 + 112600641 112600815 L1PA16 3655 + 3403 3578 64664 68 3 4 103 chain 12127 chr5 181538259 + 112610344 112610488 MER50 708 + 563 707 66612 144 chain 27624 chr5 181538259 + 112663183 112663536 THE1A 353 + 0 353 45429 110 1 0 113 0 1 129 chain 5763 chr5 181538259 + 112687128 112687199 L1MA4 2864 + 2740 2809 82072 27 2 0 42 chain 5273 chr5 181538259 + 112703208 112703273 MER33 330 + 167 238 84325 9 0 6 56 chain 10594 chr5 181538259 + 112728002 112728504 MER30 238 + 3 238 69237 15 1 29 60 4 18 37 312 0 34 10 13 29 chain 8325 chr5 181538259 + 112903372 112903570 L1PB1 5432 + 5239 5422 74097 34 15 9 12 5 0 6 5 8 18 3 1 5 1 0 14 2 0 24 1 0 14 0 1 8 1 0 11 2 1 17 chain 7548 chr5 181538259 + 112925283 112925439 MLT1B 390 + 196 326 76002 9 0 2 7 2 0 33 44 18 61 chain 29432 chr5 181538259 + 112937878 112938198 AluYb8 318 + 0 318 42692 132 2 0 186 chain 144178 chr5 181538259 + 112954183 112955800 SVA_D 2077 + 7 2070 12757 12 5 6 855 0 396 39 5 6 19 1 0 12 0 49 669 chain 21737 chr5 181538259 + 112993361 112993653 AluSp 311 + 9 309 54184 16 4 14 93 2 0 104 1 3 58 2 0 12 chain 40003 chr5 181538259 + 113032617 113033143 MER41A 554 + 0 536 34656 54 1 0 113 0 2 18 0 10 7 25 17 184 0 4 22 0 3 102 chain 11177 chr5 181538259 + 113072999 113073196 MER30 238 + 0 238 68290 15 14 43 49 4 0 13 4 21 50 2 0 22 0 1 24 chain 493427 chr5 181538259 + 113073749 113080801 L1PA5 6144 + 350 6132 3331 232 1 0 587 9 0 301 1271 0 239 1 0 272 0 1 144 0 3 402 0 1 726 1 3 409 3 0 55 0 1 120 1 0 636 1 4 142 1 0 487 0 1 150 0 5 861 chain 5692 chr5 181538259 + 113126723 113126795 Tigger2a 444 + 289 361 82384 72 chain 67853 chr5 181538259 + 113129643 113130484 L1PA7 6471 + 5618 6468 24482 522 1 0 180 13 14 28 1 9 79 1 2 16 chain 9442 chr5 181538259 + 113259697 113259829 MER85 139 + 0 139 71618 96 7 14 29 chain 10965 chr5 181538259 + 113275673 113275864 MER2 342 + 132 321 68603 61 0 1 68 42 39 20 chain 5217 chr5 181538259 + 113327771 113327851 MADE1 96 + 0 96 84596 46 0 16 34 chain 3290 chr5 181538259 + 113387722 113387824 MIR 256 + 129 232 97103 36 49 50 17 chain 77672 chr5 181538259 + 113397579 113398730 L1PA16 3655 + 2484 3617 22168 75 12 12 92 12 11 211 10 13 22 1 0 62 0 2 216 0 1 5 2 0 5 0 3 77 12 10 74 1 4 198 45 21 19 chain 39725 chr5 181538259 + 113419594 113420040 L1PA4 6152 + 5714 6152 34874 420 1 0 10 7 0 8 chain 134778 chr5 181538259 + 113456962 113458550 LTR12C 1709 + 0 1709 13557 437 0 1 281 0 118 70 5 7 196 1 0 7 3 1 106 0 4 248 1 0 233 chain 23312 chr5 181538259 + 113459259 113459551 AluY 311 + 8 296 51913 33 4 0 255 chain 16841 chr5 181538259 + 113551555 113551757 L1PA7 6471 + 6259 6461 59984 202 chain 23461 chr5 181538259 + 113610737 113611333 HUERS-P3b-int 2065 + 13 514 51648 81 3 0 59 21 23 96 10 0 27 5 0 7 142 66 10 4 2 14 15 15 21 6 3 6 0 3 45 12 11 12 chain 9505 chr5 181538259 + 113617778 113618524 LTR12C 1709 + 931 1434 71462 32 15 56 49 3 50 38 571 240 38 chain 3584 chr5 181538259 + 113618008 113618052 LTR12C 1709 + 841 885 94562 44 chain 415415 chr5 181538259 + 113646987 113651935 L1PA6 6164 + 1127 6162 4950 113 1 2 40 0 21 559 0 3 166 0 1 287 0 9 141 0 27 700 1 2 72 0 3 299 3 0 438 0 3 315 1 0 319 1 2 241 0 1 427 0 4 328 1 10 171 0 1 160 1 2 8 3 4 63 0 5 84 1 0 4 chain 3345 chr5 181538259 + 113653930 113654000 MER21B 843 + 2 73 96650 27 17 18 26 chain 245402 chr5 181538259 + 113666413 113670037 L1PB1 5432 + 1870 5427 8344 44 1 0 123 5 7 98 17 12 334 8 0 519 5 0 143 11 13 100 0 1 248 6 0 71 1 0 142 3 7 54 12 11 165 0 1 471 0 1 171 0 5 16 2 0 18 0 1 51 6 8 52 19 23 13 5 0 6 3 9 253 82 53 24 1 0 8 1 0 5 12 8 9 3 1 50 3 2 16 9 8 16 20 19 16 3 0 6 16 6 15 2 0 9 1 0 14 2 0 24 1 0 23 1 0 11 1 0 10 2 1 12 chain 43908 chr5 181538259 + 113711919 113712431 MER9a2 513 + 0 512 32188 267 1 0 5 0 1 239 chain 238103 chr5 181538259 + 113713035 113716096 HERVK9-int 4720 + 6 4720 8520 17 26 13 13 8 5 4 1 0 66 1 0 5 4 3 26 23 22 1316 2 926 146 0 1 82 66 804 146 1 2 69 3 5 35 7 10 255 0 4 739 chain 44221 chr5 181538259 + 113716096 113716616 MER9a2 513 + 0 513 31999 19 7 0 494 chain 3371 chr5 181538259 + 113719565 113719602 MLT1A1-int 1737 + 1687 1724 96391 37 chain 113662 chr5 181538259 + 113767006 113768551 THE1B-int 1605 + 18 1605 16595 12 3 0 206 8 14 42 6 5 135 51 76 153 6 21 226 0 3 183 6 0 283 0 3 225 chain 269203 chr5 181538259 + 113818987 113821987 L1PA4 6152 + 3152 6151 7727 140 1 0 2859 chain 44206 chr5 181538259 + 113854808 113855323 MER9a1 513 + 0 513 32007 13 1 0 6 2 1 493 chain 14762 chr5 181538259 + 113856378 113856542 L1P1 4361 + 3356 3520 62584 164 chain 3437 chr5 181538259 + 113879384 113879424 THE1C-int 1605 + 116 156 95766 40 chain 15393 chr5 181538259 + 113882071 113882268 THE1D-int 1627 + 0 198 61795 15 0 2 141 1 0 40 chain 3562 chr5 181538259 + 113912479 113912518 MLT2A1 477 + 438 477 94737 39 chain 149043 chr5 181538259 + 113923306 113925132 L1P3 4156 + 0 1823 12416 251 1 0 71 1 0 943 5 4 554 chain 99118 chr5 181538259 + 113925139 113926702 L1PA7 6471 + 5212 6468 18398 36 0 1 308 1 2 61 2 1 81 4 1 251 0 33 159 346 2 191 0 5 98 0 1 25 chain 525305 chr5 181538259 + 114020951 114027372 L1PA7 6471 + 0 6454 2032 521 6 7 361 1 2 42 4 8 261 1 2 333 0 1 497 1 0 518 0 1 86 0 1 574 0 4 171 0 1 106 4 0 53 0 4 16 0 4 1058 3 0 9 0 1 26 0 4 131 5 7 149 0 8 605 7 8 41 1 0 425 0 2 297 0 1 108 chain 17745 chr5 181538259 + 114052039 114052282 MER2 342 + 91 333 58956 22 1 0 182 8 8 30 chain 126451 chr5 181538259 + 114110954 114112482 L1PA6 6164 + 4629 6160 14492 72 1 0 237 1 0 374 0 4 826 1 2 16 chain 47143 chr5 181538259 + 114142415 114142954 L1PA5 6144 + 4178 4721 30595 187 0 4 352 chain 2971 chr5 181538259 + 114187106 114187144 LTR68 653 + 2 40 100188 38 chain 3383 chr5 181538259 + 114193026 114193115 MER53 195 + 12 162 96258 19 14 77 18 14 12 24 chain 4441 chr5 181538259 + 114236518 114236568 U5 65 + 0 50 88647 50 chain 13046 chr5 181538259 + 114253548 114253725 7SK 245 + 45 241 65033 109 13 32 55 chain 46068 chr5 181538259 + 114287167 114287759 L1PA8 5853 + 5261 5853 31032 133 0 2 168 1 0 43 3 1 69 3 2 14 1 0 47 2 1 19 1 0 49 0 4 34 0 1 5 chain 43506 chr5 181538259 + 114329220 114329768 MLT2A2 560 + 1 560 32453 405 9 20 74 1 0 5 0 1 54 chain 120877 chr5 181538259 + 114432499 114433929 LTR12C 1709 + 0 1709 15364 300 0 1 349 0 278 146 0 2 36 1 0 4 4 2 106 0 4 120 1 0 70 1 0 199 2 1 91 chain 285329 chr5 181538259 + 114478346 114482386 L1PA11 4918 + 470 4517 7276 11 10 6 17 0 1 194 1 0 51 2 1 124 0 5 24 2 1 36 1 0 334 0 1 65 0 1 5 1 0 8 18 1 52 2 1 8 1 4 39 0 1 107 0 3 11 18 22 21 2 0 52 31 58 80 4 3 58 3 0 185 0 1 20 0 1 12 0 14 105 9 6 33 1 0 24 0 4 33 1 8 61 1 0 63 2 1 98 0 3 181 12 4 331 0 4 97 0 5 24 0 4 34 0 4 49 0 1 141 1 2 105 2 0 5 0 2 19 48 5 42 1 0 59 2 0 131 9 7 39 7 20 19 1 0 131 0 1 5 0 1 130 0 2 152 0 1 26 3 4 58 2 1 10 2 0 45 2 1 25 5 3 9 1 0 21 4 0 9 chain 10436 chr5 181538259 + 114500000 114500174 MER1A 529 + 338 521 69546 24 0 8 21 0 3 55 36 34 38 chain 58900 chr5 181538259 + 114510064 114510831 MER4E 760 + 0 760 26693 23 0 1 127 22 25 77 0 1 117 2 0 161 12 2 226 chain 43035 chr5 181538259 + 114539423 114539935 MER9a3 513 + 1 513 32752 512 chain 446049 chr5 181538259 + 114544343 114550547 L1PA8A 6298 + 36 6291 4459 4 1 0 16 1 0 11 32 21 10 3 0 21 27 11 18 1 0 5 6 5 12 1 0 7 2 1 11 2 0 15 113 115 9 8 0 10 0 4 19 0 1 45 2 0 13 3 2 9 7 5 79 1 0 104 0 3 53 0 1 20 6 8 29 31 49 26 3 0 134 0 3 155 4 18 15 0 3 30 0 2 688 18 4 216 15 11 248 10 23 143 0 1 51 0 1 543 5 6 121 0 1 30 2 1 40 5 14 62 1 0 18 6 9 16 6 10 16 0 12 20 4 0 12 0 1 88 0 3 73 3 4 42 1 2 107 0 11 39 14 17 89 9 12 470 5 6 377 0 1 221 9 0 7 0 13 27 0 1 391 5 4 280 0 1 394 0 2 123 chain 60596 chr5 181538259 + 114567705 114568517 L1P1 4361 + 3510 4317 26202 361 19 16 25 0 10 7 15 5 216 1 0 155 1 0 12 chain 130696 chr5 181538259 + 114573139 114574650 L1PA4 6152 + 4635 6152 13955 554 0 2 300 0 3 9 0 1 189 1 0 305 5 6 148 chain 501638 chr5 181538259 + 114598034 114604325 L1PA6 6164 + 0 6162 3071 156 12 5 78 0 2 237 0 15 18 6 8 48 1 0 334 0 4 167 3 2 23 0 1 12 10 11 87 0 1 964 0 1 171 1 2 84 5 0 631 1 42 75 5 6 230 9 13 22 1 0 251 5 0 216 7 9 204 100 0 519 1 0 23 2 0 5 7 9 117 85 0 5 2 0 605 0 3 746 chain 112392 chr5 181538259 + 114640869 114642105 L1PA3long 6157 + 4664 5900 16765 1236 chain 81584 chr5 181538259 + 114643291 114644342 MER11C 1089 + 0 1063 21315 249 0 1 63 0 4 215 71 72 84 0 4 45 0 1 127 0 1 197 chain 536300 chr5 181538259 + 114670877 114676898 L1PA3long 6157 + 4 6157 1550 143 6 8 621 2 130 261 0 3 1520 1 0 3467 chain 67738 chr5 181538259 + 114681509 114682368 L1PA7 6471 + 5615 6470 24509 17 1 0 38 1 2 183 0 1 252 12 7 36 1 0 304 1 2 13 chain 3623 chr5 181538259 + 114695937 114696106 LTR12C 1709 + 897 1068 94250 29 111 113 29 chain 22206 chr5 181538259 + 114700145 114700436 MER1A 529 + 232 529 53544 129 0 4 87 11 13 64 chain 42992 chr5 181538259 + 114724076 114725412 LTR19-int 1103 + 96 1058 32778 28 17 0 7 1 0 18 25 4 50 1 0 7 30 0 11 30 0 34 27 6 50 9 4 9 5 0 40 9 1 87 6 1 23 28 27 73 4 0 19 15 4 46 1 0 9 15 9 8 93 0 10 43 41 57 45 15 10 4 1 17 2 0 4 1 0 35 42 17 19 27 11 14 2 1 44 13 3 5 2 0 25 1 0 10 23 6 18 15 11 13 chain 3048 chr5 181538259 + 114742843 114742880 L2a 937 + 361 399 99321 33 0 1 4 chain 51190 chr5 181538259 + 114799364 114800015 PABL_A 660 + 0 660 29170 56 0 4 71 3 4 88 0 1 324 0 3 109 chain 205057 chr5 181538259 + 114841470 114843935 L1PA6 6164 + 3679 6156 9537 101 8 4 92 8 16 290 3 2 1779 0 8 32 7 8 145 chain 451006 chr5 181538259 + 114844424 114849753 L1PA4 6152 + 12 5351 4367 341 18 14 904 0 1 144 0 5 176 1 0 12 3 11 691 0 2 64 0 2 290 0 1 887 2 1 52 0 1 557 3 2 465 1 0 30 10 8 678 chain 100914 chr5 181538259 + 114853680 114854961 L1PB1 5432 + 2123 3401 18195 399 5 6 308 1 0 6 4 0 171 0 1 387 chain 5951 chr5 181538259 + 114855114 114855190 L1MA4A 3247 + 3036 3111 81275 71 1 0 4 chain 324427 chr5 181538259 + 114867756 114872251 L1PA11 4918 + 15 4517 6326 27 2 0 29 10 7 37 1 0 13 2 0 53 1 0 25 12 10 38 12 17 213 2 1 237 24 22 25 0 2 104 0 9 462 0 4 64 6 8 356 0 3 16 0 1 9 10 7 272 1 0 41 7 0 6 5 12 98 1 0 8 0 8 39 2 0 8 0 1 76 1 0 163 0 1 161 3 0 11 0 2 40 1 0 219 1 4 266 8 0 277 11 19 60 0 7 77 2 0 22 0 1 270 0 1 143 18 17 70 7 8 74 0 2 30 11 0 77 4 1 66 2 0 14 8 7 24 chain 496140 chr5 181538259 + 114875896 114882373 L1PA7 6471 + 0 6446 3263 196 2 1 44 22 12 154 2 0 5 12 0 131 0 1 356 3 4 7 0 3 7 3 0 115 16 12 286 29 30 396 12 14 36 17 13 816 0 2 106 0 1 124 9 0 114 6 5 277 5 9 276 1 2 103 3 5 6 0 1 39 0 1 21 0 2 5 2 0 182 5 6 4 1 0 70 9 11 141 0 1 43 0 1 290 0 1 520 0 1 113 5 1 17 0 1 87 0 4 389 1 0 89 1 7 10 15 0 570 3 1 148 chain 9455 chr5 181538259 + 114895801 114895927 MER75B 242 + 115 242 71596 108 2 3 16 chain 36058 chr5 181538259 + 114919562 114919965 L1PA3long 6157 + 845 1248 37382 403 chain 85952 chr5 181538259 + 114928751 114930257 LTR12C 1709 + 84 1698 20453 52 11 25 29 114 113 70 26 28 63 4 0 6 38 0 3 30 0 50 29 28 148 0 159 207 11 74 76 44 13 234 24 1 77 1 0 6 6 6 75 1 0 71 chain 18250 chr5 181538259 + 114954035 114954374 THE1C 375 + 3 364 58412 104 4 5 62 67 89 38 10 9 4 0 1 35 1 0 14 chain 18085 chr5 181538259 + 114955980 114956288 THE1C 375 + 0 333 58573 59 10 11 109 0 2 6 54 76 70 chain 19068 chr5 181538259 + 114974660 114974876 L1PA2 6032 + 5800 6016 57472 216 chain 462060 chr5 181538259 + 114990489 114996568 HERV9-int 5642 + 0 5598 4077 289 1 2 173 1 0 324 20 19 59 0 1 37 85 0 203 84 0 97 0 1 30 318 7 758 0 1 468 0 1 360 0 2 133 1 0 1068 0 2 400 8 7 294 0 1 248 0 1 4 1 0 244 1 0 213 15 13 37 3 1 26 2 1 60 1 0 13 chain 778 chr5 181538259 + 114991393 114991423 HERV9-int 5642 + 989 1019 69710 30 chain 2022 chr5 181538259 + 114991683 114991761 HERV9-int 5642 + 1029 1107 69710 78 chain 4794 chr5 181538259 + 114999670 114999734 LTR12D 1347 + 670 752 86734 18 0 18 46 chain 5073 chr5 181538259 + 115000049 115000106 LTR12C 1709 + 1652 1709 85295 57 chain 24821 chr5 181538259 + 115000448 115000737 AluSp 311 + 9 296 49552 12 2 0 275 chain 6500 chr5 181538259 + 115035863 115035946 L1PA7 6471 + 3413 3497 79347 4 0 1 79 chain 12733 chr5 181538259 + 115035947 115036094 L1PA7 6471 + 3497 3644 65556 147 chain 157657 chr5 181538259 + 115042278 115044246 L1PA7 6471 + 3638 5622 11901 198 2 0 237 0 1 131 0 1 30 1 0 416 2 0 5 9 15 159 11 0 14 0 22 74 9 8 400 0 3 270 chain 67396 chr5 181538259 + 115044256 115045079 L1PA7 6471 + 5634 6461 24600 503 1 0 297 0 5 22 chain 274980 chr5 181538259 + 115059342 115062358 L1PA3long 6157 + 3137 6157 7583 791 0 1 17 0 1 210 0 1 427 0 1 1571 chain 252290 chr5 181538259 + 115074030 115077126 L1PA7 6471 + 3310 6467 8174 174 9 40 87 0 1 224 18 16 628 0 1 6 1 2 178 0 4 16 0 2 296 9 7 632 2 0 324 18 43 21 0 2 453 chain 17797 chr5 181538259 + 115113876 115114088 LTR17 781 + 103 325 58898 18 0 9 52 0 1 142 chain 515520 chr5 181538259 + 115117313 115123392 L1PA5 6144 + 0 6130 2492 128 14 40 116 0 5 298 0 7 217 3 20 338 9 0 265 0 2 182 0 1 628 2 0 29 0 4 908 1 0 1153 0 4 256 1 0 1204 1 0 190 1 0 135 chain 3093 chr5 181538259 + 115128394 115128427 Tigger3b 1229 + 642 675 98848 33 chain 251062 chr5 181538259 + 115153791 115158111 L1PB1 5432 + 1925 5427 8200 288 15 10 17 0 1 150 17 19 5 2 0 80 2 0 5 8 1 35 0 2 38 1 6 358 0 1 66 0 3 14 483 0 451 0 11 243 4 0 3 3 0 287 3 0 138 0 1 47 2 1 172 0 1 6 13 12 219 5 7 106 1 0 75 0 2 6 4 3 115 308 0 65 3 2 75 11 20 11 1 6 7 7 0 22 1 0 9 1 0 11 18 12 50 2 1 15 1 0 39 6 5 16 25 12 19 28 23 20 1 0 21 1 0 13 1 0 16 2 0 7 chain 19981 chr5 181538259 + 115222535 115222761 L1PA5 6144 + 5544 5770 56408 226 chain 31770 chr5 181538259 + 115222764 115223128 L1PA5 6144 + 5780 6144 40520 364 chain 4761 chr5 181538259 + 115259096 115259152 MER5A1 166 + 98 154 86910 56 chain 6007 chr5 181538259 + 115289536 115289626 LTR54B 464 + 368 453 81050 17 1 0 6 1 0 38 3 0 24 chain 33854 chr5 181538259 + 115328650 115329894 LTR9B 643 + 5 573 38811 39 1 0 24 7 29 89 694 0 15 10 9 10 0 1 113 7 6 71 42 43 110 3 0 9 chain 22461 chr5 181538259 + 115329178 115329465 LTR70 1284 + 23 315 53177 70 0 1 181 4 8 32 chain 58796 chr5 181538259 + 115358080 115358828 MER4E1 777 + 0 770 26740 25 1 0 217 0 1 8 6 5 29 3 0 48 0 19 81 0 1 108 2 8 220 chain 313848 chr5 181538259 + 115410306 115413718 L1PA2 6032 + 2604 6016 6539 1447 0 1 461 1 0 1503 chain 39943 chr5 181538259 + 115421770 115422195 L1HS 6032 + 5059 5484 34703 425 chain 72906 chr5 181538259 + 115437411 115438214 L1PA3long 6157 + 5352 6156 23335 636 0 1 167 chain 515656 chr5 181538259 + 115441912 115448199 L1PA5 6144 + 0 6132 2487 128 0 14 977 5 6 44 9 0 532 1 0 350 3 5 257 8 7 9 45 0 426 0 1 124 31 14 44 0 4 216 2 0 398 101 0 119 2 0 1407 5 5 207 1 0 516 0 1 256 0 1 64 chain 7346 chr5 181538259 + 115445521 115445603 L1PA5 6144 + 4150 4232 75384 82 chain 81667 chr5 181538259 + 115448386 115449373 LTR5B 1012 + 0 1012 21306 130 1 15 148 0 1 591 4 6 37 0 6 69 0 2 7 chain 3941 chr5 181538259 + 115518461 115518509 Tigger3c 601 + 54 102 91825 48 chain 9137 chr5 181538259 + 115564598 115564708 MSTB 430 + 309 422 72267 18 0 3 92 chain 5860 chr5 181538259 + 115627360 115627514 MLT1C 463 + 5 140 81652 26 44 42 41 9 0 10 8 0 16 chain 26620 chr5 181538259 + 115650819 115651207 LTR7B 505 + 0 505 46801 105 0 10 55 19 87 33 1 0 21 1 42 88 11 10 54 chain 47043 chr5 181538259 + 115653778 115654413 HERVH-int 3825 + 3186 3825 30639 33 0 1 4 1 0 19 29 28 139 6 9 273 0 2 131 chain 27857 chr5 181538259 + 115654650 115655409 LTR7B 505 + 2 505 45096 106 0 10 53 52 31 32 2 23 54 0 41 23 307 0 32 0 1 33 14 13 51 chain 22520 chr5 181538259 + 115667688 115670455 L1MA2 4263 + 374 4056 53092 107 1 0 14 5 0 32 2290 3205 74 3 0 32 1 13 105 33 31 52 1 0 17 chain 550299 chr5 181538259 + 115674518 115680700 L1PA3long 6157 + 1 6157 720 1189 0 3 303 0 1 906 0 7 236 39 0 51 0 1 601 1 0 647 0 1 1436 0 1 773 chain 63176 chr5 181538259 + 115690565 115691261 SVA_D 2077 + 1080 2077 25585 23 0 303 665 2 0 6 chain 27309 chr5 181538259 + 115891592 115891939 THE1-int 844 + 487 826 45816 214 5 0 71 2 0 34 1 0 20 chain 31102 chr5 181538259 + 115891988 115892751 L1MA2 4263 + 3586 4217 41055 77 1 0 77 4 5 57 41 40 50 1 5 61 9 7 59 3 0 34 11 12 14 1 3 18 1 0 5 205 75 19 4 2 11 chain 9489 chr5 181538259 + 115905022 115905150 MER85 139 + 1 139 71497 95 2 14 6 2 0 23 chain 19925 chr5 181538259 + 115952262 115952518 MER65A 464 + 203 464 56487 111 1 0 105 0 1 27 0 4 4 0 1 8 chain 23009 chr5 181538259 + 115959254 115959722 L1PB1 5432 + 5000 5418 52345 46 0 1 5 1 0 51 1 0 10 2 1 24 1 0 8 17 12 9 2 0 19 0 1 33 2 1 16 1 0 42 2 1 16 3 0 18 8 0 7 50 25 24 1 0 34 1 0 14 chain 27654 chr5 181538259 + 116056895 116057211 L1P1 4361 + 3602 3918 45391 316 chain 21556 chr5 181538259 + 116075193 116075541 THE1B 368 + 0 362 54431 111 10 12 54 51 63 122 chain 231794 chr5 181538259 + 116079903 116082724 L1P3 4156 + 0 2852 8695 236 0 14 70 1 0 56 0 6 23 8 10 244 1 3 33 13 12 142 0 1 219 1 2 453 0 1 747 0 1 150 0 1 25 0 3 182 1 2 161 0 1 34 1 0 20 chain 183404 chr5 181538259 + 116125818 116127930 L1PA5 6144 + 4022 6138 10420 315 0 4 1797 chain 440746 chr5 181538259 + 116166484 116171982 L1PA7 6471 + 942 6466 4562 59 0 1 4 2 1 234 2 0 108 11 9 316 3 7 25 0 2 354 0 13 381 1 0 63 0 2 120 6 2 246 0 4 95 0 1 28 7 5 80 0 4 134 0 1 252 25 4 38 1 0 14 0 4 184 0 1 91 1 0 60 1 9 57 0 1 99 0 1 500 8 9 243 0 2 13 0 1 536 0 2 5 6 4 164 0 2 75 3 0 6 3 12 678 2 3 64 0 1 90 chain 315308 chr5 181538259 + 116191932 116196482 L1PB1 5432 + 74 5419 6496 52 8 3 42 1 5 34 14 13 178 7 0 10 0 1 340 0 4 56 3 4 168 0 6 6 5 1 26 1 5 41 5 1 67 5 7 84 0 2 164 25 25 153 7 0 136 0 4 63 1 3 134 0 2 26 1 6 111 18 16 38 2 1 243 3 0 191 0 1 190 18 15 66 1 0 68 0 3 46 36 40 39 1 0 249 1 2 251 0 4 14 3 6 178 0 3 6 42 39 107 11 736 12 0 1 64 1 0 326 2 0 55 4 0 19 0 84 44 25 23 44 1 0 7 31 20 19 8 5 14 2 0 24 1 0 21 1 0 10 1 0 18 chain 101972 chr5 181538259 + 116203154 116204301 L1P1 4361 + 1394 2542 18067 933 0 1 214 chain 62073 chr5 181538259 + 116263224 116263990 MER4E 760 + 0 760 25854 17 0 4 508 1 0 4 23 15 62 1 0 150 chain 216161 chr5 181538259 + 116266646 116269101 L1PA5 6144 + 3681 6138 9145 560 1 0 1053 1 0 383 0 4 457 chain 3180 chr5 181538259 + 116449644 116449679 MER126 217 + 87 122 98107 35 chain 40672 chr5 181538259 + 116531625 116532153 LTR10A 586 + 42 574 34168 96 0 2 62 9 10 69 1 2 291 chain 81595 chr5 181538259 + 116589444 116590370 L1PA5 6144 + 5195 6141 21313 74 0 21 92 1 0 759 chain 12666 chr5 181538259 + 116621069 116621336 L1PB1 5432 + 5158 5404 65691 11 2 0 49 6 5 14 1 0 44 1 0 15 3 0 7 15 6 18 27 25 18 1 0 18 4 3 13 chain 299553 chr5 181538259 + 116705177 116709043 Harlequin-int 5206 + 125 4008 6846 7 0 3 133 20 22 13 18 0 19 0 3 159 8 0 39 4 5 73 0 1 578 0 1 107 2 1 761 0 2 28 6 39 439 16 9 173 0 1 4 2 1 52 20 26 235 1 4 240 2 1 170 9 6 5 0 2 43 5 0 7 0 3 136 2 0 12 2 3 16 1 0 5 0 1 76 0 2 6 8 7 204 chain 32638 chr5 181538259 + 116761469 116761929 LTR7B 505 + 0 503 39823 105 0 10 69 6 13 28 3 27 26 0 2 42 0 1 39 1 0 26 4 5 48 2 1 61 chain 22096 chr5 181538259 + 116766889 116767155 L1PA5 6144 + 5877 6143 53705 8 1 0 68 0 1 24 0 1 152 1 0 12 chain 4147 chr5 181538259 + 116818087 116818130 5S 121 + 0 43 90476 43 chain 73860 chr5 181538259 + 116821138 116822098 LTR5_Hs 974 + 0 974 23131 115 5 13 161 0 1 177 0 1 188 1 0 163 8 15 19 20 18 35 0 1 5 1 0 62 chain 11167 chr5 181538259 + 116946920 116947059 L1MB5 1630 + 1184 1323 68310 139 chain 25087 chr5 181538259 + 116947063 116947481 LTR7B 505 + 0 495 49138 110 0 10 55 43 20 27 1 89 7 0 1 43 1 0 26 4 5 11 0 2 35 15 14 40 chain 29723 chr5 181538259 + 116967527 116967897 THE1B 368 + 0 368 42341 158 1 0 9 6 5 196 chain 19976 chr5 181538259 + 116981342 116981677 THE1D 372 + 0 348 56419 52 17 27 21 4 5 83 9 7 42 3 9 9 1 0 52 1 0 4 1 2 27 1 0 8 chain 35466 chr5 181538259 + 116986758 116987207 L1PA7 6471 + 5187 5620 37744 136 22 1 214 0 1 51 0 4 26 chain 20371 chr5 181538259 + 116994725 116995028 L1PA8 5853 + 5548 5844 55928 16 2 1 45 2 0 66 21 19 45 2 1 19 1 0 84 chain 121991 chr5 181538259 + 117197703 117199172 L1PA7 6471 + 4988 6462 15192 477 0 1 155 2 0 10 0 1 66 0 2 273 0 1 30 2 0 5 0 2 125 0 1 182 3 4 139 chain 3295 chr5 181538259 + 117230736 117230777 MADE1 96 + 46 96 97058 21 0 9 20 chain 144517 chr5 181538259 + 117304478 117306345 LTR12C 1709 + 0 1709 12728 102 7 6 201 0 1 4 1 0 40 1 0 483 161 0 274 1 0 6 2 0 107 0 4 413 0 4 64 chain 12987 chr5 181538259 + 117305318 117305478 LTR12C 1709 + 837 997 47878 160 chain 29052 chr5 181538259 + 117310635 117311108 L1PB2 3958 + 3374 3838 43247 21 5 4 4 0 1 35 2 0 12 4 0 94 1 0 73 11 10 40 24 23 45 0 3 16 2 0 20 1 0 63 chain 24082 chr5 181538259 + 117484855 117485140 AluSp 311 + 20 303 50675 112 2 0 171 chain 19831 chr5 181538259 + 117492500 117492719 L1P1 4361 + 3942 4160 56632 209 1 0 9 chain 4659 chr5 181538259 + 117492719 117492778 L1P1 4361 + 3912 3972 85390 21 1 2 37 chain 29231 chr5 181538259 + 117522877 117523219 LTR14A 344 + 0 344 43001 105 0 2 237 chain 70820 chr5 181538259 + 117543355 117544121 L1PA2 6032 + 5264 6031 23802 652 0 1 114 chain 14681 chr5 181538259 + 117582957 117583185 THE1D 372 + 102 332 62695 52 0 1 13 30 32 24 1 0 108 chain 10210 chr5 181538259 + 117604524 117604661 L1PA7 6471 + 6332 6466 69992 119 5 2 13 chain 5918 chr5 181538259 + 117612124 117612217 L1PB1 5432 + 5332 5420 81407 17 2 0 21 1 0 21 4 3 10 1 0 16 chain 78848 chr5 181538259 + 117663558 117664567 L1PA7 6471 + 5463 6461 21909 40 2 1 117 0 3 79 1 0 156 0 3 122 4 1 247 23 0 12 0 11 206 chain 157200 chr5 181538259 + 117719945 117721725 L1PA5 6144 + 4343 6128 11932 604 0 1 351 0 4 825 chain 20179 chr5 181538259 + 117753762 117754045 L1PB2 3958 + 3554 3834 56161 63 1 0 66 1 0 62 0 2 6 2 0 14 10 9 58 chain 139285 chr5 181538259 + 117773901 117775763 L1PB1 5432 + 3169 5094 13159 309 6 5 19 1 2 230 0 5 16 0 4 83 12 16 134 1 0 32 0 18 163 0 3 26 0 1 67 0 3 80 2 1 89 0 4 53 2 1 5 0 2 10 1 0 61 9 18 76 0 2 7 1 0 249 0 13 118 chain 22259 chr5 181538259 + 117819499 117819805 L1PA11 4918 + 2673 3001 53465 19 0 7 9 12 0 12 0 20 223 0 7 31 chain 46270 chr5 181538259 + 117821419 117821932 MER9a2 513 + 0 513 30936 513 chain 16167 chr5 181538259 + 117826931 117827134 L1PA3long 6157 + 5954 6157 60793 48 12 12 143 chain 4582 chr5 181538259 + 117832885 117832940 MLT1F2 592 + 503 559 87896 47 0 1 8 chain 109128 chr5 181538259 + 117907775 117908991 L1PA3long 6157 + 4929 6157 17164 262 0 1 118 0 4 687 0 7 149 chain 78659 chr5 181538259 + 117918288 117919177 L1PA4 6152 + 5260 6151 21947 143 0 1 596 4 5 146 chain 57071 chr5 181538259 + 117931412 117932031 L1PA2 6032 + 4744 5363 27246 619 chain 38187 chr5 181538259 + 117953575 117954109 THE1A-int 1579 + 0 537 35919 52 9 10 76 5 6 196 1 0 98 4 6 48 1 2 4 1 0 39 chain 10166 chr5 181538259 + 117954109 117954230 THE1A 353 + 229 352 69575 66 0 2 55 chain 3039 chr5 181538259 + 118034386 118034424 LTR12C 1709 + 819 856 99422 18 1 0 19 chain 55563 chr5 181538259 + 118038610 118039290 L1PA7 6471 + 5777 6466 27700 194 0 1 303 7 12 26 0 1 142 0 2 8 chain 27272 chr5 181538259 + 118118246 118118538 AluYb8 318 + 26 318 45865 292 chain 36682 chr5 181538259 + 118148251 118148688 L1PA5 6144 + 5692 6129 36962 290 5 0 8 5 10 129 chain 94544 chr5 181538259 + 118177110 118178154 L1PA2 6032 + 4996 6029 18958 9 10 0 167 1 0 857 chain 87127 chr5 181538259 + 118266492 118267470 L1PA5 6144 + 5153 6131 20210 978 chain 49513 chr5 181538259 + 118273929 118274506 L1PA7 6471 + 5796 6373 29762 577 chain 130924 chr5 181538259 + 118281987 118283545 SVA_C 1631 + 0 1620 13937 4 1 0 7 0 3 10 2 0 17 6 0 10 0 6 46 1 0 589 40 0 25 0 40 96 0 26 31 1 0 45 1 0 47 1 0 8 0 40 570 chain 547857 chr5 181538259 + 118382971 118389064 L1PA3long 6157 + 2 6102 870 1054 0 3 130 1 4 49 1 0 228 0 1 3354 0 1 1276 chain 35288 chr5 181538259 + 118403400 118403813 L1PA3long 6157 + 5202 5613 37834 105 1 0 173 1 0 133 chain 136900 chr5 181538259 + 118423237 118425230 L1PA10 4194 + 2258 4142 13345 40 167 54 246 11 14 14 1 0 50 0 4 58 0 1 97 6 0 292 2 1 97 35 35 353 0 1 181 0 4 134 1 3 179 3 0 26 chain 295671 chr5 181538259 + 118478442 118482386 L1PBa1 4058 + 101 4040 6958 327 14 13 177 13 12 25 0 1 442 33 32 160 23 8 156 2 3 99 0 1 105 1 0 145 0 7 641 0 13 98 0 14 123 0 1 727 14 13 107 2 0 50 0 4 26 0 1 5 0 3 26 1 0 6 1 0 28 2 1 43 2 0 47 0 1 58 3 1 22 17 9 13 6 4 15 2 1 4 1 0 4 3 0 21 1 0 9 12 9 6 1 0 6 1 0 8 1 0 16 1 0 42 chain 144508 chr5 181538259 + 118494446 118496035 L1PA4 6152 + 4549 6143 12729 89 0 5 1500 chain 16029 chr5 181538259 + 118518139 118518420 Tigger4b 360 + 0 294 60992 25 6 0 3 10 0 88 2 35 97 30 26 20 chain 261574 chr5 181538259 + 118567041 118570227 HERVL-int 5654 + 2474 5654 7925 1275 3 0 330 0 1 20 7 0 135 3 0 576 0 1 379 0 1 237 0 1 151 1 4 69 chain 67264 chr5 181538259 + 118622985 118623754 L1PA4 6152 + 5374 6143 24632 524 2 1 97 0 1 146 chain 70135 chr5 181538259 + 118642508 118643280 L1PA4 6152 + 5380 6152 23967 772 chain 396345 chr5 181538259 + 118714347 118721369 L1PB1 5432 + 26 5420 5208 413 0 1 76 58 28 4 1 0 181 1569 0 58 3 6 158 0 1 274 0 2 156 22 19 169 6 9 13 5 10 106 2 0 68 0 4 1060 2 0 88 0 4 116 0 4 101 15 12 435 2 1 61 5 7 45 6 5 304 1 2 452 7 8 4 0 1 66 4 13 32 2 1 25 2 1 306 1 0 59 0 1 18 0 2 87 47 11 33 1 0 9 6 2 11 2 0 25 0 8 18 2 1 16 1 0 44 1 0 13 70 54 22 1 0 21 4 3 10 1 0 16 chain 134281 chr5 181538259 + 118715095 118716615 L1PA5 6144 + 4619 6137 13620 623 2 0 77 1 2 570 1 0 246 chain 19227 chr5 181538259 + 118734513 118734858 THE1B 368 + 0 368 57316 44 6 21 25 6 5 74 7 6 23 45 55 115 chain 3955 chr5 181538259 + 118758211 118758257 U7 62 + 1 47 91723 46 chain 36614 chr5 181538259 + 118763104 118763500 L1PA2 6032 + 5633 6029 37008 396 chain 143091 chr5 181538259 + 118763898 118766125 L1PA10 4194 + 2113 4161 12852 203 318 0 118 5 122 48 6 8 17 0 1 15 4 5 214 11 5 87 2 0 173 4 7 92 0 7 30 1 6 443 5 4 249 1 17 133 3 0 33 1 0 11 chain 40174 chr5 181538259 + 118800748 118801208 LTR2 463 + 0 463 34538 61 0 3 399 chain 17420 chr5 181538259 + 118811807 118812022 L1PA7 6471 + 6256 6469 59328 203 2 0 10 chain 116475 chr5 181538259 + 118848627 118850030 L1PA7 6471 + 5061 6467 16136 366 0 1 192 2 0 7 0 1 688 1 0 56 0 8 81 4 0 6 chain 218325 chr5 181538259 + 118874571 118878291 L1PA13 3608 + 113 3488 9084 23 5 2 26 2 1 13 7 4 19 31 19 67 6 4 121 68 58 11 1 0 16 3 1 12 5 7 16 2 1 36 1 0 17 0 1 19 4 5 17 1 4 7 4 0 41 5 10 55 0 1 225 0 1 81 2 1 21 18 4 39 0 1 4 1 0 36 1 4 104 0 1 39 0 3 49 31 37 55 0 1 86 1 0 6 0 1 14 1 0 318 28 1 71 0 2 5 5 3 70 1 0 5 0 1 139 7 12 105 0 1 294 0 10 19 8 10 67 332 10 238 14 6 46 0 3 125 8 7 32 1 0 84 0 31 54 11 10 23 1 0 29 1 0 5 2 0 48 14 10 14 1 0 20 chain 10252 chr5 181538259 + 118913043 118913172 MER85 139 + 0 139 69894 90 0 10 39 chain 7159 chr5 181538259 + 118914125 118914452 MSTD 398 + 5 385 77073 52 210 243 26 4 24 35 chain 4345 chr5 181538259 + 118925884 118925935 L1P5 443 + 286 337 89206 51 chain 6116 chr5 181538259 + 118926080 118926185 L1PB2 3958 + 3736 3838 80674 17 2 0 22 15 14 49 chain 35531 chr5 181538259 + 118929207 118929645 MER57A1 433 + 0 433 37695 282 5 0 151 chain 4717 chr5 181538259 + 118930682 118930770 L1MB8 1703 + 1455 1542 87153 13 4 0 45 7 5 9 0 5 10 chain 134155 chr5 181538259 + 118964394 118965941 SVA_C 1631 + 0 1619 13634 12 1 18 22 29 0 841 0 96 14 0 1 149 0 1 146 14 0 319 chain 173444 chr5 181538259 + 118970518 118972882 L1PA10 4194 + 960 3343 10931 267 0 13 7 16 3 40 0 4 353 0 2 191 7 8 112 0 2 222 0 4 131 0 6 92 13 14 198 0 1 27 3 0 7 16 19 193 0 1 63 1 0 10 5 4 7 2 0 167 19 20 195 chain 213737 chr5 181538259 + 118975713 118978700 L1PA11 4918 + 1540 4487 9209 272 1 2 241 89 92 49 1 0 18 1 0 331 13 17 158 7 6 242 0 1 5 1 0 6 0 1 615 0 5 128 32 12 190 29 10 32 3 0 170 2 0 50 0 1 113 2 1 21 5 0 64 2 1 14 2 0 22 13 16 28 2 0 13 chain 105362 chr5 181538259 + 118998459 118999712 SVA_B 1603 + 7 1603 17633 15 45 27 444 0 37 28 0 76 157 0 241 259 0 7 305 chain 12350 chr5 181538259 + 119023259 119023430 MER2 342 + 146 318 66225 144 11 12 16 chain 2920 chr5 181538259 + 119056500 119056532 L1MC1 2226 + 2152 2184 100670 32 chain 16427 chr5 181538259 + 119186889 119187087 L1PA5 6144 + 5948 6144 60480 184 3 1 11 chain 18730 chr5 181538259 + 119257978 119258557 L1PREC2 3366 + 2654 3215 57868 57 1 0 41 2 0 54 1 0 40 47 125 35 6 4 38 238 148 19 chain 79074 chr5 181538259 + 119413544 119414540 MER11A 1151 + 0 1151 21848 63 1 100 131 4 0 32 0 2 115 0 1 94 2 0 146 5 6 145 0 49 32 0 9 42 1 0 16 0 1 167 chain 22659 chr5 181538259 + 119414540 119414812 L1PA6 6164 + 5884 6156 52885 272 chain 90679 chr5 181538259 + 119436209 119437276 MER11C 1089 + 0 1073 19555 563 6 12 498 chain 501210 chr5 181538259 + 119439179 119445196 L1PA6 6164 + 2 6162 3091 304 7 124 87 0 2 48 1 0 200 5 20 20 0 17 30 18 10 81 0 1 126 8 9 647 0 2 30 0 1 221 4 0 346 1 2 119 9 13 331 0 4 367 0 2 5 2 0 13 5 6 340 9 0 234 0 1 715 1 0 1023 1 3 211 6 2 360 6 7 76 chain 83674 chr5 181538259 + 119446183 119447234 HERVIP10FH-int 2884 + 149 1198 20878 64 3 0 127 1 0 4 0 1 55 2 0 153 0 1 16 0 1 150 0 1 476 chain 35881 chr5 181538259 + 119448830 119449308 LTR10F 562 + 0 562 37481 147 3 84 22 5 6 239 1 3 61 chain 24328 chr5 181538259 + 119455244 119455533 AluSc 308 + 8 296 50291 249 1 0 39 chain 132216 chr5 181538259 + 119516922 119518460 LTR12C 1709 + 0 1709 13805 678 0 125 34 1 0 275 1 0 4 4 2 106 0 4 176 0 36 140 1 11 118 chain 5059 chr5 181538259 + 119549679 119549735 MER51A 677 + 364 420 85360 56 chain 269535 chr5 181538259 + 119558496 119562043 L1PB2 3958 + 194 3743 7720 34 4 1 310 0 3 84 13 16 186 0 3 60 0 1 360 1 0 287 0 1 35 1 0 11 5 4 95 0 1 281 0 1 349 0 1 4 1 0 153 12 17 432 1 0 353 0 1 29 2 0 54 1 0 13 5 0 24 1 0 4 5 6 10 0 4 13 8 6 10 5 0 94 4 3 35 0 4 30 1 0 45 0 1 5 1 0 11 1 0 64 chain 3813 chr5 181538259 + 119595699 119595751 MER57A-int 1588 + 250 303 92754 10 1 2 41 chain 500111 chr5 181538259 + 119599331 119605464 L1HS 6032 + 6 6032 3124 119 17 3 14 12 25 85 9 8 314 0 1 126 0 7 60 138 10 65 6 7 4 1 0 64 1 0 196 1 0 9 11 12 679 0 2 756 0 5 862 0 1 328 0 2 998 0 1 167 0 1 21 0 1 312 0 3 758 chain 55163 chr5 181538259 + 119704181 119704919 MER4E1 777 + 0 770 27821 51 1 0 96 15 18 164 0 19 85 0 1 107 1 9 189 5 7 24 chain 94090 chr5 181538259 + 119719541 119720621 L1PA5 6144 + 5060 6144 19029 234 22 26 824 chain 64541 chr5 181538259 + 119751149 119751953 LTR17 781 + 0 781 25301 327 1 0 421 22 0 33 chain 33163 chr5 181538259 + 119755373 119755941 L1PB1 5432 + 4879 5420 39394 224 5 4 7 1 0 33 1 0 11 16 10 10 0 2 40 2 1 15 1 0 44 1 0 16 1 0 6 5 4 7 8 0 14 32 28 15 1 0 22 1 0 12 1 0 16 chain 335768 chr5 181538259 + 119769229 119773372 L1P3 4156 + 0 4139 6132 34 1 0 208 0 1 6 13 12 57 7 6 85 1 0 795 7 6 152 0 1 392 1 2 418 0 1 82 1 0 261 5 6 103 1 2 587 0 1 275 2 1 45 4 8 43 0 1 24 0 1 4 1 0 375 6 0 112 2 0 9 1 0 23 chain 40333 chr5 181538259 + 119798365 119798940 LTR8 732 + 0 718 34422 315 0 1 54 0 141 11 17 18 27 17 16 83 0 1 51 chain 28700 chr5 181538259 + 119846137 119846696 L1PB1 5432 + 4887 5427 43798 147 4 8 4 0 1 5 1 0 51 1 2 9 16 0 24 1 0 8 1 0 12 5 1 8 2 0 30 1 22 17 1 0 45 1 0 16 14 0 10 50 49 14 1 0 21 1 0 13 2 1 18 1 0 4 chain 13721 chr5 181538259 + 119856674 119857032 L1PB1 5432 + 5106 5430 63991 8 1 0 24 1 0 4 3 2 12 2 0 3 2 0 9 3 1 50 1 0 12 14 13 37 8 7 8 1 0 4 2 0 13 10 1 12 9 6 14 2 0 24 7 6 15 1 0 13 1 0 11 1 0 11 1 0 4 chain 40868 chr5 181538259 + 119949577 119950220 MER41B 635 + 0 626 34046 123 4 6 117 0 3 70 38 16 41 17 16 59 13 9 5 0 3 88 9 11 59 chain 15316 chr5 181538259 + 120022250 120022519 THE1B 368 + 34 307 61889 16 9 0 6 5 14 99 1 0 29 9 16 11 9 8 9 2 1 64 chain 18333 chr5 181538259 + 120027505 120027882 L1P4 1494 + 111 469 58318 12 1 0 22 1 0 174 125 108 42 chain 30685 chr5 181538259 + 120028321 120028723 L1P3 4156 + 3739 4139 41397 129 18 19 220 2 0 7 2 1 24 chain 19499 chr5 181538259 + 120072911 120073120 SVA_D 2077 + 1868 2077 57027 209 chain 15870 chr5 181538259 + 120109618 120109925 L1PB1 5432 + 5114 5392 61199 24 1 0 9 1 0 9 17 11 52 1 0 18 1 0 44 1 0 15 3 0 8 13 4 19 8 5 14 2 0 24 1 0 22 chain 126017 chr5 181538259 + 120118042 120119474 L1PA5 6144 + 4049 5488 14554 293 5 9 943 0 3 191 chain 117738 chr5 181538259 + 120147385 120148746 SVA_C 1631 + 0 1631 15928 17 3 0 631 2 3 110 0 296 366 23 3 188 4 0 17 chain 88580 chr5 181538259 + 120184398 120186035 L1MA1 4479 + 2595 4188 19927 7 5 0 65 10 9 84 27 25 19 1 0 68 1 0 8 16 17 15 62 63 11 2 0 27 7 6 122 1 2 16 2 0 9 11 7 76 1 0 12 5 0 125 7 0 30 0 4 63 0 1 27 2 0 201 1 0 25 3 0 16 1 0 15 0 3 55 8 0 17 2 0 14 1 0 5 0 10 53 1 2 4 1 0 14 1 0 5 3 0 82 85 83 17 8 9 8 1 0 6 5 2 13 6 0 16 chain 5838 chr5 181538259 + 120192420 120192494 MLT1C 463 + 353 427 81743 74 chain 42527 chr5 181538259 + 120194431 120195792 L1P3 4156 + 2439 2982 33046 194 4 5 203 819 0 141 chain 14323 chr5 181538259 + 120223422 120223597 THE1C 375 + 198 373 63165 175 chain 104767 chr5 181538259 + 120273525 120274903 L1P3 4156 + 2762 4136 17718 51 0 10 167 10 0 84 9 10 9 0 4 374 11 12 58 0 4 40 4 7 233 2 0 3 13 0 258 0 1 20 2 0 7 2 1 21 chain 4068 chr5 181538259 + 120325220 120325277 L1MA6 2487 + 2339 2393 90954 40 3 0 14 chain 37670 chr5 181538259 + 120351047 120351536 MER9a3 513 + 0 513 36289 18 0 2 159 0 1 4 0 1 127 4 25 97 0 1 10 2 0 68 chain 116926 chr5 181538259 + 120377778 120379614 THE1B-int 1605 + 0 1600 16068 269 7 8 82 3 6 67 3 34 52 6 5 165 10 9 589 235 4 231 39 1 78 chain 28625 chr5 181538259 + 120400358 120400723 THE1C 375 + 0 363 43910 185 1 0 164 1 0 14 chain 28762 chr5 181538259 + 120438026 120438359 L1PA7 6471 + 6136 6468 43686 321 1 0 11 chain 10324 chr5 181538259 + 120540649 120540776 MER85 139 + 2 139 69754 87 0 10 40 chain 125487 chr5 181538259 + 120610789 120612374 THE1A-int 1579 + 0 1579 14631 81 2 0 88 2 1 5 0 1 814 1 0 286 4 8 19 2 3 92 8 0 55 7 8 4 1 0 114 chain 10708 chr5 181538259 + 120621635 120621855 THE1C 375 + 115 325 69034 5 1 0 63 75 66 76 chain 3449 chr5 181538259 + 120626384 120626429 L1MB8 1703 + 1541 1586 95655 45 chain 55056 chr5 181538259 + 120714412 120715098 L1PA8A 6298 + 5603 6291 27848 71 0 1 120 9 8 194 0 1 182 1 2 109 chain 46938 chr5 181538259 + 120818113 120818765 LTR12_ 688 + 0 688 30683 57 0 41 40 24 8 102 14 23 70 0 2 345 chain 3875 chr5 181538259 + 120825374 120825532 MLT1A 405 + 28 187 92318 19 88 91 43 2 0 6 chain 550515 chr5 181538259 + 120831425 120838135 L1PA3long 6157 + 0 6157 705 5 2 0 45 0 1 1138 0 3 1201 1 0 705 0 1 2156 8 0 265 547 0 637 chain 2351 chr5 181538259 + 120914218 120914245 MER46C 351 + 198 225 104443 27 chain 61131 chr5 181538259 + 120936646 120937741 LTR12D 1347 + 0 1339 26079 204 53 38 11 15 16 12 20 0 22 101 30 31 2 0 135 0 109 86 6 47 80 44 50 45 23 220 160 2 0 43 chain 5413 chr5 181538259 + 120940695 120940778 MLT2B2 565 + 2 77 83643 66 8 0 9 chain 22681 chr5 181538259 + 120950645 120950958 THE1B 368 + 55 368 52848 99 21 20 72 0 1 121 chain 121035 chr5 181538259 + 120952951 120954560 THE1A-int 1579 + 0 1579 15344 113 1 4 388 5 4 53 0 1 68 41 0 79 1 0 299 7 12 383 0 4 171 chain 159570 chr5 181538259 + 120962976 120970876 L1PA7 6471 + 4122 6461 11778 526 7 4 302 0 1 12 5473 229 16 0 1 14 0 2 14 9 10 368 1 0 77 1 3 107 320 0 653 chain 30425 chr5 181538259 + 120963829 120964214 L1PA7 6471 + 2215 2601 41657 134 8 6 5 0 1 159 0 2 79 chain 52792 chr5 181538259 + 120964214 120964881 L1PA7 6471 + 5828 6465 28641 523 38 8 106 chain 58886 chr5 181538259 + 120983144 120983906 L1PA8 5853 + 5066 5853 26707 325 0 17 108 1 2 44 1 0 46 2 0 17 0 1 52 2 1 65 6 16 93 chain 12738 chr5 181538259 + 121043627 121043776 L1PA5 6144 + 3138 3286 65547 26 1 0 122 chain 9695 chr5 181538259 + 121047866 121047979 L1PA10 4194 + 3996 4109 71058 113 chain 531876 chr5 181538259 + 121064235 121070237 L1PA3long 6157 + 0 6156 1754 153 12 8 64 0 1 550 0 128 507 0 9 160 0 1 1373 0 1 188 0 1 254 3 20 499 2 1 2071 0 1 166 chain 128415 chr5 181538259 + 121106996 121108531 LTR12C 1709 + 0 1709 14232 14 0 1 467 12 13 155 0 119 68 1 0 234 0 47 106 0 4 287 1 0 163 0 4 27 chain 271956 chr5 181538259 + 121221245 121225850 L1PA8 5853 + 50 5847 7660 22 2 0 10 1 0 13 55 19 87 121 108 312 34 38 458 4 5 18 1 0 237 1 12 9 29 0 151 0 4 9 332 47 169 302 0 227 0 2 10 1 2 60 0 1 9 0 4 94 1 0 4 0 1 86 1 5 202 0 4 108 0 1 60 0 1829 252 0 1 50 0 4 129 0 1 4 1 0 69 6 2 11 1 0 41 0 1 5 1 0 30 2 0 82 7 6 7 0 1 40 6 8 333 7 6 34 6 5 22 0 1 49 1 0 13 2 1 12 39 38 15 2 1 86 chain 44205 chr5 181538259 + 121274997 121275496 L1P1 4361 + 3831 4328 32008 319 1 0 155 1 0 23 chain 4284 chr5 181538259 + 121281372 121281422 LTR51 675 + 625 675 89604 50 chain 3816 chr5 181538259 + 121296924 121297069 LTR16B 463 + 8 160 92738 25 87 94 33 chain 19267 chr5 181538259 + 121322358 121322613 THE1C 375 + 0 263 57272 78 4 11 96 1 2 76 chain 55201 chr5 181538259 + 121335930 121336657 L1PA8A 6298 + 5129 5863 27807 352 16 20 69 2 3 83 3 0 5 0 5 197 chain 112260 chr5 181538259 + 121352455 121353690 L1PA4 6152 + 4504 5741 16783 1187 0 2 48 chain 6378 chr5 181538259 + 121378209 121378316 MSTB2 466 + 277 389 79750 69 20 25 18 chain 3302 chr5 181538259 + 121398684 121398719 L1PA3long 6157 + 5640 5675 97001 35 chain 41116 chr5 181538259 + 121398719 121399183 L1PA3long 6157 + 5693 6157 33902 464 chain 178020 chr5 181538259 + 121411028 121412960 L1PA2 6032 + 4096 6026 10679 1923 2 0 7 chain 51653 chr5 181538259 + 121428401 121429001 L1PA4 6152 + 4185 4786 28983 427 0 1 173 chain 24198 chr5 181538259 + 121449594 121449895 L1PA7 6471 + 6175 6468 50500 189 9 1 103 chain 11433 chr5 181538259 + 121468006 121468721 L1PA5 6144 + 5430 6144 67860 355 12 0 26 0 11 322 chain 30539 chr5 181538259 + 121505484 121506058 L1PB1 5432 + 4883 5417 41534 205 0 4 6 9 4 12 3 0 24 1 0 4 3 2 10 22 16 49 3 2 16 4 3 41 1 0 12 32 15 18 3 1 5 1 0 14 2 0 24 1 0 23 1 0 11 1 0 13 chain 84865 chr5 181538259 + 121543327 121544429 HERVL-int 5654 + 0 1123 20645 34 1 0 32 0 1 23 0 1 565 0 1 19 1 0 6 15 34 9 1 0 5 0 1 139 0 5 208 9 5 35 chain 7626 chr5 181538259 + 121544464 121544611 MLT2A2 560 + 413 560 75809 20 28 28 40 1 0 4 1 2 53 chain 155727 chr5 181538259 + 121557043 121558819 L1PA5 6144 + 2101 3872 12023 620 8 3 440 1 0 561 0 1 146 chain 18979 chr5 181538259 + 121569506 121569781 THE1B 368 + 0 353 57572 44 0 15 99 18 83 59 2 0 53 chain 8574 chr5 181538259 + 121584259 121584441 Tigger3a 397 + 54 274 73511 40 45 71 13 1 5 8 0 10 7 2 0 66 chain 44003 chr5 181538259 + 121597325 121597835 MER9a2 513 + 0 513 32126 128 0 1 154 0 1 20 0 1 208 chain 17684 chr5 181538259 + 121599380 121599635 L1PA16 3655 + 3125 3372 59025 10 1 0 69 1 0 26 13 9 52 2 0 81 chain 489812 chr5 181538259 + 121602030 121608594 L1PA7 6471 + 276 6470 3427 135 0 1 265 173 72 278 6 11 392 0 1 39 4 4 81 1 0 203 0 1 290 4 0 62 1 0 23 0 2 27 0 1 97 1 0 83 1 2 174 0 2 109 5 1 464 0 4 164 0 1 87 8 9 33 2 1 176 0 3 294 0 1 670 1 0 233 0 3 210 19 22 479 322 7 5 0 3 61 0 1 43 6 24 693 1 0 4 0 1 20 0 9 102 2 0 11 chain 12041 chr5 181538259 + 121602468 121602603 L1PA7 6471 + 1363 1498 66604 135 chain 43803 chr5 181538259 + 121616909 121617610 LTR12 884 + 0 750 32249 74 0 132 149 0 22 194 9 10 147 104 1 9 3 0 12 chain 16154 chr5 181538259 + 121617610 121617808 LTR12_ 688 + 454 652 60806 39 0 1 19 1 0 139 chain 25344 chr5 181538259 + 121635567 121636035 MER51B 395 + 9 386 48720 54 83 48 53 56 0 81 1 0 5 0 1 135 chain 501747 chr5 181538259 + 121659905 121666048 L1PA6 6164 + 0 6154 3068 262 1 0 431 1 0 79 0 1 4 1 0 97 0 1 576 0 1 761 0 2 114 10 13 24 18 0 141 5 7 294 0 1 281 0 5 87 2 3 5 0 2 713 0 2 600 1 5 114 0 1 49 1 2 329 0 1 105 0 1 69 4 5 108 0 4 22 0 1 163 1 0 71 6 4 593 chain 34164 chr5 181538259 + 121668021 121668403 L1HS 6032 + 5644 6029 38587 268 0 3 114 chain 256497 chr5 181538259 + 121672475 121675309 L1PA3long 6157 + 3303 6137 8074 643 0 1 551 2 1 1638 chain 10196 chr5 181538259 + 121679152 121679266 L1PA7 6471 + 4372 4486 70019 114 chain 14941 chr5 181538259 + 121679267 121679449 L1PA7 6471 + 4488 4670 62332 182 chain 25964 chr5 181538259 + 121679450 121679762 L1PA7 6471 + 4670 4983 47772 308 0 1 4 chain 117732 chr5 181538259 + 121679763 121681229 L1PA7 6471 + 4983 6464 15929 223 1 0 239 7 6 141 7 11 17 4 1 176 0 1 59 1 0 275 1 0 29 0 1 234 0 16 52 chain 3977 chr5 181538259 + 121699591 121699636 MADE1 96 + 1 46 91592 45 chain 81409 chr5 181538259 + 121778802 121779861 L1PB1 5432 + 3766 4799 21355 196 0 2 23 23 0 61 9 6 570 3 0 83 1 2 90 chain 19297 chr5 181538259 + 121805127 121805368 L1PA7 6471 + 5796 6049 57240 17 0 11 35 0 1 189 chain 35045 chr5 181538259 + 121805374 121805784 L1PA7 6471 + 6060 6470 37986 410 chain 4584 chr5 181538259 + 121843466 121843521 MER58B 340 + 257 312 87880 55 chain 42325 chr5 181538259 + 121893956 121894458 L1PA7 6471 + 5801 6305 33173 139 0 2 363 chain 12448 chr5 181538259 + 121894462 121894625 L1PA7 6471 + 6310 6468 66072 62 0 1 26 4 0 60 2 0 9 chain 53755 chr5 181538259 + 121894730 121895367 L1PA7 6471 + 5801 6438 28300 637 chain 121721 chr5 181538259 + 121921177 121922959 L1PA7 6471 + 4991 6468 15224 632 0 1 388 0 1 134 301 0 160 8 9 142 7 0 10 chain 9695 chr5 181538259 + 121937957 121938160 L1PA16 3655 + 3446 3619 71059 116 72 42 15 chain 135258 chr5 181538259 + 121951723 121953175 L1PA2 6032 + 4576 6028 13514 1452 chain 341633 chr5 181538259 + 121994959 121998676 L1PA2 6032 + 2295 6030 6034 43 0 15 623 0 2 2428 0 2 24 1 0 598 chain 68634 chr5 181538259 + 122049147 122049933 L1PA4 6152 + 2258 3045 24302 465 2 0 5 0 2 116 0 1 198 chain 483505 chr5 181538259 + 122204952 122210543 L1PA5 6144 + 3 6134 3568 90 10 535 808 2 0 398 1 0 47 1 8 1274 0 1 12 1 0 30 0 1 468 0 1 665 0 1 953 0 7 15 0 1 816 chain 418771 chr5 181538259 + 122240435 122244924 L1HS 6032 + 1542 6031 4897 4489 chain 390473 chr5 181538259 + 122267804 122273188 L1PB1 5432 + 80 5403 5312 23 2 9 496 1 0 59 0 2 156 4 9 148 10 11 402 1 0 7 2 0 1 5 0 27 17 18 58 17 1 27 3 7 193 10 1 158 0 1 37 1 0 297 2 0 267 13 1 28 0 4 58 1 4 43 0 3 70 21 22 943 30 17 26 7 10 206 0 3 23 1 0 529 27 30 100 11 6 482 1 2 9 5 0 24 1 0 5 34 27 47 7 6 14 1 0 38 73 57 14 2 0 24 1 0 21 1 0 12 chain 26416 chr5 181538259 + 122353479 122353841 THE1B 368 + 0 367 47099 172 10 9 19 2 0 106 5 13 48 chain 23836 chr5 181538259 + 122364121 122364429 MER41A 554 + 20 547 51045 55 0 215 141 1 0 35 0 5 76 chain 2761 chr5 181538259 + 122370036 122370068 L1MA4 2864 + 2777 2809 101898 32 chain 3785 chr5 181538259 + 122483185 122483321 L1ME1 1623 + 177 312 92952 27 74 73 35 chain 43359 chr5 181538259 + 122542664 122543203 MER41A 554 + 13 554 32534 353 0 1 55 5 6 126 chain 8255 chr5 181538259 + 122550960 122551215 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chain 27263 chr5 181538259 + 123731447 123731799 THE1A 353 + 0 353 45874 109 2 1 85 0 1 99 0 1 57 chain 26691 chr5 181538259 + 123733375 123733706 THE1A 353 + 0 330 46698 111 1 0 219 chain 168283 chr5 181538259 + 123933969 123935827 L1HS 6032 + 360 2218 11203 4 0 1 342 1 0 142 0 1 4 1 0 1364 chain 26201 chr5 181538259 + 123942060 123942376 L1P2 5180 + 1471 1787 47417 316 chain 59769 chr5 181538259 + 123945929 123946702 MER4E1 777 + 0 770 26442 71 1 8 14 10 1 368 1 2 78 11 9 219 chain 25578 chr5 181538259 + 123975324 123975623 L1PA5 6144 + 5843 6142 48352 299 chain 25783 chr5 181538259 + 124040222 124040589 THE1C 375 + 0 375 48044 53 9 17 39 0 1 72 14 14 154 1 0 25 chain 25900 chr5 181538259 + 124086034 124086388 THE1A 353 + 0 351 47868 68 0 3 19 4 0 14 5 4 93 2 0 25 2 3 122 chain 10934 chr5 181538259 + 124095945 124096075 L1PB1 5432 + 3370 3509 68643 44 0 9 86 chain 4917 chr5 181538259 + 124104550 124104623 MER5A1 166 + 43 115 86072 18 2 1 53 chain 31361 chr5 181538259 + 124135866 124136298 MLT2A1 477 + 0 467 40841 78 0 4 80 16 13 210 4 0 6 9 47 29 chain 13590 chr5 181538259 + 124152252 124152586 L1PB1 5432 + 5107 5404 64179 7 3 0 24 1 0 7 1 0 11 18 12 52 2 1 15 1 0 45 5 0 15 2 0 6 1 0 9 9 0 15 32 27 17 1 0 17 6 5 12 chain 27836 chr5 181538259 + 124202598 124202941 THE1D-int 1627 + 0 345 45128 10 3 2 218 0 3 112 chain 520925 chr5 181538259 + 124213171 124219039 L1PA4 6152 + 1 5879 2231 204 0 1 529 0 1 508 1 0 238 0 2 3399 10 17 979 chain 6547 chr5 181538259 + 124239691 124239968 MLT1F1 559 + 192 525 79170 21 1 0 50 164 219 13 1 4 19 1 0 7 chain 25030 chr5 181538259 + 124294136 124294521 THE1D 372 + 0 372 49231 70 24 5 60 0 4 27 25 27 179 chain 277594 chr5 181538259 + 124304231 124307828 HERVH-int 3825 + 59 3825 7500 273 1 0 118 12 130 23 29 1 14 1 0 12 109 2 25 23 1 39 1 0 82 1 0 652 9 0 39 1 0 108 9 4 156 0 2 39 0 1 40 0 6 27 0 1 232 8 13 309 0 1 5 5 4 130 0 2 570 8 218 487 chain 4531 chr5 181538259 + 124304746 124304823 HERVH-int 3825 + 638 693 87210 18 22 0 37 chain 25373 chr5 181538259 + 124309062 124309464 LTR7 482 + 0 470 48660 68 9 47 109 9 41 14 3 0 6 8 7 127 12 14 37 chain 24369 chr5 181538259 + 124322619 124322895 L1PA4 6152 + 5862 6138 50214 276 chain 25284 chr5 181538259 + 124350566 124350890 THE1C 375 + 0 333 48808 14 0 8 163 1 2 146 chain 3300 chr5 181538259 + 124357783 124358231 L1PA8A 6298 + 5507 5956 29095 26 0 1 36 1 4 120 3 0 262 chain 529430 chr5 181538259 + 124358252 124364401 L1PA5 6144 + 0 6141 1858 362 18 20 787 9 0 66 9 8 304 0 1 548 0 1 1695 0 1 990 0 2 316 0 1 984 6 0 55 chain 2490 chr5 181538259 + 124364416 124364754 L1PA8A 6298 + 5956 6278 29095 120 0 2 110 25 7 83 chain 75585 chr5 181538259 + 124382553 124383570 MER11A 1151 + 0 1151 22696 60 2 101 133 4 0 126 13 24 94 11 0 190 5 6 86 1 0 15 17 48 33 0 9 47 2 0 11 6 7 161 chain 6936 chr5 181538259 + 124407526 124407669 L1MB3 1562 + 1245 1377 77826 51 26 15 9 5 0 4 0 6 22 1 0 25 chain 504306 chr5 181538259 + 124423189 124429275 L1PA6 6164 + 35 6156 2989 82 0 1 22 5 4 52 0 1 312 2 1 281 1 18 1082 0 1 94 6 5 349 0 1 848 0 1 104 6 7 926 0 1 616 10 10 461 1 4 619 0 11 207 chain 23045 chr5 181538259 + 124435583 124435965 THE1D 372 + 16 372 52300 39 12 5 128 15 11 75 18 2 5 0 1 38 5 7 13 2 0 32 chain 292071 chr5 181538259 + 124497445 124501085 HERVH-int 3825 + 0 3824 7072 333 1 0 202 5 0 35 13 11 11 22 12 14 1 0 12 24 19 7 1 0 41 1 0 80 0 2 60 1 4 235 6 8 137 15 0 206 9 0 29 0 2 10 1 0 94 0 4 213 0 1 304 8 13 423 1 1 346 0 2 199 9 11 39 0 210 268 0 2 224 chain 96612 chr5 181538259 + 124521440 124522777 LTR12C 1709 + 0 1709 18702 104 2 1 151 19 25 9 4 0 64 2 1 94 1 0 21 1 0 17 5 6 11 9 10 12 8 7 71 0 1 45 0 280 95 0 1 86 1 0 5 3 1 106 11 4 168 0 102 129 1 0 82 chain 101311 chr5 181538259 + 124525500 124526619 L1PA3long 6157 + 5030 6149 18151 1119 chain 28701 chr5 181538259 + 124555876 124556182 AluYa5 310 + 0 304 43795 132 2 0 172 chain 57923 chr5 181538259 + 124609056 124609720 L1PA6 6164 + 3408 4074 26989 158 0 1 135 0 1 371 chain 179755 chr5 181538259 + 124609720 124611800 L1PA6 6164 + 4078 6158 10598 1345 0 3 14 1 0 39 9 11 73 1 0 446 1 0 6 0 1 114 4 1 27 chain 20643 chr5 181538259 + 124751676 124751930 AluSp 311 + 30 284 55567 10 0 1 68 1 0 175 chain 38503 chr5 181538259 + 124766256 124766701 L1PA4 6152 + 5704 6152 35705 271 0 1 168 0 2 6 chain 28026 chr5 181538259 + 124785058 124785504 MLT2A2 560 + 0 560 44823 169 65 63 69 0 2 6 0 107 42 0 5 36 1 0 6 0 3 52 chain 225758 chr5 181538259 + 124834227 124838127 L1PB1 5432 + 2303 5408 8865 115 0 2 75 16 9 32 1 0 120 0 3 177 17 10 40 0 3 316 0 1 138 2 0 143 0 4 5 0 1 212 3 4 19 2 0 88 0 4 18 0 1 105 36 20 46 360 0 206 1 0 133 1 3 129 14 13 116 0 1 13 7 8 154 4 12 298 105 8 6 5 0 24 1 0 9 1 0 9 27 21 43 0 1 5 13 10 45 337 27 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 4 chain 249588 chr5 181538259 + 124914339 124917323 L1PA7 6471 + 3465 6470 8250 31 0 1 4 2 0 95 0 4 378 0 6 622 0 2 90 0 1 411 1 5 354 0 5 64 0 1 4 1 0 70 2 5 205 0 1 518 4 0 128 chain 10531 chr5 181538259 + 124937503 124938026 Tigger1 2417 + 2202 2417 69363 6 0 1 42 1 0 53 370 62 51 chain 249286 chr5 181538259 + 124963879 124972998 MER61-int 3695 + 1 3695 8257 22 12 7 7 8 0 8 1 0 136 2 1 91 1 0 86 0 4 48 15 1 11 0 1 4 1 0 109 7 6 83 0 4 8 3 99 27 1 2 56 22 0 155 0 6 35 0 3 13 1 0 172 0 1 15 0 3 162 4 0 21 3 1 119 6 8 72 0 4 7 0 5 288 0 1 190 0 3 79 0 3 194 0 1 147 2 0 80 1 0 5 1 0 46 5 6 101 1 0 26 0 1 58 5569 20 27 1 0 182 7 45 23 3 2 5 0 1 18 34 43 212 2 1 78 0 4 98 14 15 68 chain 8030 chr5 181538259 + 125001975 125002208 LTR37A 408 + 144 389 74808 10 1 0 9 80 83 40 23 33 70 chain 105873 chr5 181538259 + 125088533 125089913 LTR12C 1709 + 0 1709 17581 31 0 9 46 1 4 175 1 2 69 0 43 94 0 4 10 4 5 71 7 3 84 0 278 184 1 0 35 0 2 71 15 8 481 chain 5236 chr5 181538259 + 125127294 125127372 MADE1 96 + 0 95 84522 22 6 23 50 chain 434251 chr5 181538259 + 125161103 125166837 L1PA8 5853 + 108 5853 4681 4 0 1 148 12 11 26 19 7 65 9 7 193 0 11 5 11 0 10 0 4 15 3 1 20 0 3 506 1 0 85 4 7 53 0 1 123 2 1 136 3 4 324 3 9 136 0 2 60 3 0 159 10 12 647 4 0 35 1 2 40 5 7 447 0 7 113 27 16 299 4 0 113 1 10 54 3 5 259 0 2 185 1 0 191 5 7 98 0 1 214 0 5 358 0 5 87 0 1 99 1 0 44 2 0 70 30 25 5 0 3 29 2 1 22 8 7 83 chain 5559 chr5 181538259 + 125205113 125205221 MER33 330 + 60 174 82995 32 13 14 38 6 11 19 chain 107622 chr5 181538259 + 125206561 125207859 L1PA7 6471 + 5169 6467 17374 430 0 4 18 1 0 508 4 5 83 0 1 4 1 0 75 1 0 4 0 1 13 1 0 144 3 0 8 chain 13713 chr5 181538259 + 125326842 125327016 MER30 238 + 0 200 64001 113 0 26 61 chain 25554 chr5 181538259 + 125456806 125457132 THE1A 353 + 0 324 48393 108 2 0 216 chain 117390 chr5 181538259 + 125457157 125458710 THE1A-int 1579 + 8 1579 15985 63 23 10 89 1 0 5 0 1 22 10 16 86 6 0 3 0 5 110 0 11 273 1 0 111 6 7 302 2 1 263 0 11 97 0 5 80 chain 61373 chr5 181538259 + 125487802 125488534 L1PA5 6144 + 5400 6138 26015 213 0 1 342 1 0 4 0 1 6 13 19 105 1 0 47 chain 192814 chr5 181538259 + 125532478 125534899 L1PA8 5853 + 3443 5853 9978 164 0 1 234 12 1 290 1 0 572 0 1 13 6 6 280 0 1 4 2 0 171 0 4 379 1 0 26 0 1 17 2 0 57 0 1 13 1 0 9 13 11 45 0 1 15 2 1 92 chain 292188 chr5 181538259 + 125567981 125571370 L1PA4 6152 + 10 5167 7064 5 0 1 464 0 1759 180 0 1 155 8 10 680 0 2 686 1 0 403 0 4 807 chain 3085 chr5 181538259 + 125605780 125605815 MLT2B3 573 + 54 89 98935 35 chain 97372 chr5 181538259 + 125618274 125619362 L1PA2 6032 + 4947 6032 18613 1065 1 0 6 2 0 14 chain 166330 chr5 181538259 + 125624790 125626672 L1PA5 6144 + 3991 5874 11314 272 0 2 15 0 2 587 1 0 944 2 0 61 chain 33517 chr5 181538259 + 125632340 125632709 L1PA3long 6157 + 5788 6157 39072 369 chain 101086 chr5 181538259 + 125675849 125676942 L1PA2 6032 + 4936 6032 18173 944 0 3 149 chain 119607 chr5 181538259 + 125691260 125692804 THE1B-int 1605 + 0 1605 15592 322 0 2 102 0 25 43 9 10 28 0 3 399 1 0 48 10 11 345 1 0 28 0 1 10 1 31 197 chain 265541 chr5 181538259 + 125731160 125735012 L1PA10 4194 + 335 4161 7811 19 62 43 6 2 0 76 6 5 274 1 0 31 0 1 11 10 9 69 10 1 336 22 17 270 0 7 112 0 2 27 0 3 106 1 0 246 1 0 24 0 1 99 40 40 13 0 1 4 2 1 20 16 20 101 21 19 93 0 1 106 0 1 4 1 0 74 6 7 46 6 4 183 36 36 59 3 0 11 16 16 149 3 1 53 2 0 90 1 6 325 0 1 83 1 0 7 7 8 217 1 5 145 1 0 37 3 0 33 1 0 11 chain 168525 chr5 181538259 + 125740123 125742759 L1PA5 6144 + 3512 6135 11184 414 19 0 709 1 0 25 0 5 600 0 1 46 7 8 651 1 2 5 1 0 157 chain 29170 chr5 181538259 + 125742769 125743284 L1PB1 5432 + 4915 5404 43094 183 18 21 19 8 6 14 5 1 9 2 0 51 1 0 18 1 0 43 1 0 16 2 0 8 16 7 15 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 chain 23845 chr5 181538259 + 125760573 125760908 THE1B 368 + 0 348 51028 39 2 17 116 1 0 8 0 3 7 10 7 97 1 0 54 chain 14991 chr5 181538259 + 125817293 125817657 MSTB 430 + 0 377 62276 73 21 22 30 18 22 10 3 1 29 67 74 32 2 1 8 1 6 49 2 1 19 chain 320502 chr5 181538259 + 125841210 125845574 L1PA7 6471 + 816 6465 6397 65 7 9 40 6 7 342 313 0 81 2 3 79 14 16 14 9 0 117 0 5 165 2 1 69 0 3 467 0 1 197 5 1593 484 2 0 5 4 6 88 0 4 272 1 0 25 5 6 641 15 14 661 30 32 137 chain 121151 chr5 181538259 + 125850300 125851909 L1PA8 5853 + 4193 5847 15325 80 1 2 59 2 0 28 1 2 554 2 1 78 37 37 59 0 1 26 0 1 391 0 33 19 1 0 43 3 1 68 5 4 10 1 0 46 8 24 87 chain 14756 chr5 181538259 + 125866465 125866684 MER30 238 + 0 238 62593 95 18 31 27 3 9 76 chain 41418 chr5 181538259 + 125940319 125940794 MER9a1 513 + 0 471 33723 43 1 0 135 3 0 293 chain 8535 chr5 181538259 + 125942137 125942238 MSTA-int 1630 + 1520 1622 73613 19 0 1 82 chain 164864 chr5 181538259 + 125996349 125999113 L1PA8 5853 + 3705 5853 11420 42 0 1 35 0 1 4 0 1 235 314 0 80 3 4 95 7 11 97 25 23 354 308 0 37 0 2 113 0 1 161 4 7 25 0 1 52 1 0 477 1 0 44 2 0 70 2 1 9 1 0 52 2 1 9 0 1 9 1 0 93 chain 30484 chr5 181538259 + 125999152 125999521 L1PA8 5853 + 5195 5564 41592 318 0 1 8 1 0 42 chain 10476 chr5 181538259 + 125999522 125999669 L1PA8 5853 + 5564 5725 69457 46 2 0 72 9 25 18 chain 8283 chr5 181538259 + 125999686 125999787 L1PA8 5853 + 5741 5841 74206 19 1 0 81 chain 16719 chr5 181538259 + 126006051 126006270 MER61-int 3695 + 1303 1528 60131 105 0 1 64 1 6 49 chain 2864 chr5 181538259 + 126009470 126009504 HSMAR1 1287 + 1253 1287 101130 34 chain 208173 chr5 181538259 + 126028625 126031618 L1PA13 3608 + 86 3068 9413 4 1 0 19 6 4 22 2 0 4 1 0 20 31 23 18 27 18 73 2 0 24 1 0 78 18 20 15 1 0 17 2 0 16 6 2 18 1 0 19 3 1 14 2 0 19 6 5 86 2 5 416 0 1 61 1 0 268 1 2 24 1 0 103 8 12 57 10 12 89 0 2 265 4 0 14 0 4 181 7 9 514 10 18 112 1 2 119 2 0 5 1 5 43 0 1 33 0 1 65 chain 13819 chr5 181538259 + 126031631 126031938 L1PB1 5432 + 5106 5381 63847 8 1 0 24 1 0 9 20 15 5 2 0 53 2 1 16 1 0 44 1 0 7 34 20 19 8 5 14 2 0 24 1 0 11 chain 48823 chr5 181538259 + 126058444 126059100 LTR12 884 + 0 872 30004 25 1 0 30 0 107 178 1 2 36 2 0 170 0 103 16 1 0 76 5 13 7 0 1 108 chain 88456 chr5 181538259 + 126072779 126073903 MER11A 1151 + 0 1150 19954 108 0 2 66 8 0 23 2 0 29 1 0 66 5 1 31 0 2 142 4 4 199 6 9 137 18 52 279 chain 37780 chr5 181538259 + 126073908 126074371 L1PA7 6471 + 6011 6470 36218 296 11 10 146 3 0 7 chain 466755 chr5 181538259 + 126086498 126092101 L1PA6 6164 + 0 6162 3937 84 5 516 187 0 17 119 0 1 99 1 0 126 0 2 312 0 4 284 2 1 579 1 3 308 0 4 170 0 1 372 11 8 504 0 4 10 0 8 407 1 3 599 1 0 393 0 1 180 5 10 516 3 5 174 1 2 10 4 3 10 0 1 125 chain 4853 chr5 181538259 + 126092693 126092750 Tigger3c 601 + 468 525 86412 57 chain 120456 chr5 181538259 + 126112377 126113954 THE1A-int 1579 + 0 1579 15450 302 2 0 5 0 1 410 23 21 271 4 5 65 5 10 278 22 21 4 0 1 144 1 0 41 chain 11408 chr5 181538259 + 126113956 126114154 THE1A 353 + 2 190 67902 32 9 8 39 16 8 17 8 7 77 chain 369738 chr5 181538259 + 126172927 126177984 L1PA8 5853 + 689 5853 5666 133 2 0 78 0 1 190 12 14 34 1 0 19 24 24 94 3 1 269 0 8 277 0 3 15 7 3 53 0 2 20 0 1 55 1 0 9 13 14 11 15 15 242 0 4 76 0 1 128 0 3 114 0 4 115 8 21 34 0 1 195 0 2 34 0 45 314 0 1 4 1 0 22 10 14 132 2 0 5 0 2 81 2 3 14 0 1 200 4 5 99 1 2 153 0 1 119 5 8 70 0 3 37 0 2 14 20 19 50 0 1 424 0 5 36 0 3 29 1 0 8 12 14 59 10 7 57 8 12 21 6 9 129 0 3 321 1 0 44 2 0 70 2 1 13 2 1 47 2 1 19 1 0 93 chain 357924 chr5 181538259 + 126202961 126208168 L1PB1 5432 + 421 5422 5821 104 1 4 104 2 0 79 23 24 28 10 12 221 1 4 117 7 5 106 0 2 174 11 19 283 3 0 5 17 23 97 177 0 116 10 9 10 0 3 188 0 1 22 1 11 267 0 2 37 1 2 87 48 5 226 0 2 6 0 8 8 35 1 269 1 2 101 0 3 307 4 13 42 1 0 152 1 0 58 0 1 196 8 15 307 0 1 59 0 5 44 0 1 109 0 2 5 0 2 9 0 1 81 10 7 379 0 2 87 1 0 11 3 0 24 2 0 8 1 0 12 5 1 10 5 3 5 1 0 10 1 11 22 2 1 15 1 0 45 2 1 14 27 15 16 2 0 5 4 3 11 2 0 6 0 2 11 1 0 5 2 1 20 1 0 13 1 0 18 chain 87365 chr5 181538259 + 126214514 126215486 L1PA4 6152 + 5180 6152 20164 972 chain 14126 chr5 181538259 + 126221258 126221709 LTR12D 1347 + 591 1177 63412 42 41 0 73 48 0 46 158 382 43 chain 2443 chr5 181538259 + 126221425 126221459 LTR12D 1347 + 718 751 103954 17 1 0 16 chain 374540 chr5 181538259 + 126221877 126226407 HERV9-int 5642 + 0 5642 5576 635 1 0 160 1 0 312 4 0 670 0 1133 872 2 0 817 0 1 279 6 5 231 1 24 90 1 0 218 16 14 36 3 1 26 2 1 60 1 0 13 28 5 19 4 0 3 2 0 17 chain 85966 chr5 181538259 + 126228929 126230219 LTR12D 1347 + 0 1347 20448 264 140 69 203 6 37 125 19 12 312 27 0 27 1 0 34 1 0 45 0 133 86 chain 27399 chr5 181538259 + 126230225 126230680 L1PA14 3548 + 2998 3447 45709 7 2 0 52 0 7 25 0 1 24 4 0 17 2 0 6 1 0 5 1 5 74 1 0 108 21 18 32 4 2 12 1 0 5 1 0 16 1 0 33 chain 20280 chr5 181538259 + 126248288 126248534 L1PA6 6164 + 5912 6162 56037 237 0 4 9 chain 391927 chr5 181538259 + 126291919 126296622 L1PA4 6152 + 1425 6152 5292 15 1 0 299 2 1 580 3 2 211 7 10 31 1 4 374 0 2 223 9 0 78 1 6 71 0 1 849 0 2 102 0 2 61 1 5 123 10 10 13 0 4 770 0 1 26 7 9 30 0 4 62 0 3 743 chain 68827 chr5 181538259 + 126303431 126304344 L1PA10 4194 + 3231 4161 24253 212 1 4 300 2 1 8 0 2 62 0 28 91 15 1 166 0 1 4 1 0 5 3 0 27 0 3 4 1 0 11 chain 8362 chr5 181538259 + 126422510 126422621 MER30 238 + 132 238 73990 6 2 0 53 3 0 47 chain 41620 chr5 181538259 + 126518101 126518682 MER4D1 891 + 121 765 33614 49 22 24 43 0 28 13 0 3 129 1 0 16 4 3 164 0 32 140 chain 139697 chr5 181538259 + 126528581 126530102 L1PA3long 6157 + 4636 6157 13118 1521 chain 6246 chr5 181538259 + 126533675 126533746 MER34A1 583 + 9 80 80187 71 chain 39337 chr5 181538259 + 126566908 126567418 LTR10C 591 + 0 591 35123 106 0 72 77 0 2 243 8 10 13 6 11 57 chain 5702 chr5 181538259 + 126590140 126590273 SVA_F 1814 + 374 466 82334 21 41 1 34 6 5 31 chain 46917 chr5 181538259 + 126599795 126600372 LTR10C 591 + 5 591 30693 137 0 2 237 0 1 71 1 0 57 0 1 4 0 1 30 0 5 40 chain 6540 chr5 181538259 + 126634039 126634120 L1MB3 1562 + 1036 1117 79188 81 chain 39873 chr5 181538259 + 126648632 126649123 HERVH-int 3825 + 3338 3825 34760 223 15 10 44 0 1 209 chain 85315 chr5 181538259 + 126670390 126671329 L1PA3long 6157 + 5207 6146 20566 939 chain 30684 chr5 181538259 + 126673077 126673480 LTR7 482 + 0 482 41398 69 8 46 109 0 1 25 0 30 34 0 10 158 chain 9488 chr5 181538259 + 126701623 126701735 AluSc 308 + 17 129 71498 112 chain 2774 chr5 181538259 + 126730088 126730129 MER5A 189 + 87 129 101798 25 1 2 15 chain 24608 chr5 181538259 + 126751360 126751670 AluSc5 308 + 0 307 49855 47 1 0 244 2 0 16 chain 22554 chr5 181538259 + 126834600 126834869 AluY 311 + 0 276 53038 47 5 11 74 0 1 143 chain 81669 chr5 181538259 + 126910478 126911492 MER11B 1079 + 8 1079 21305 132 1 66 53 3 0 47 0 1 276 13 12 177 6 0 277 5 6 24 chain 27389 chr5 181538259 + 126929696 126930062 THE1B 368 + 0 368 45722 169 1 0 27 19 24 11 1 0 9 1 0 128 chain 136680 chr5 181538259 + 126989977 126991554 L1PA6 6164 + 4585 6161 13368 105 3 2 1136 1 0 4 0 1 169 2 1 5 0 1 152 chain 44249 chr5 181538259 + 127016328 127016840 L1PA6 6164 + 5219 5739 31982 99 0 4 115 0 1 250 0 3 48 chain 36898 chr5 181538259 + 127016856 127017270 L1PA6 6164 + 5747 6162 36818 271 0 1 143 chain 5840 chr5 181538259 + 127020467 127020558 MLT1A0 366 + 45 148 81738 44 12 24 35 chain 172820 chr5 181538259 + 127123903 127125812 L1PA4 6152 + 4239 6151 10961 1627 0 3 282 chain 32179 chr5 181538259 + 127146432 127146816 L1PA5 6144 + 5761 6142 40208 215 8 9 150 4 0 7 chain 50269 chr5 181538259 + 127182604 127183349 LTR12 884 + 0 884 29461 90 0 132 156 2 0 166 99 104 25 3 7 204 chain 518542 chr5 181538259 + 127197146 127203290 L1PA6 6164 + 0 6162 2339 194 1 2 4 1 0 209 4 3 9 7 8 31 6 5 352 17 0 435 2 20 38 0 2 122 0 5 12 0 1 873 0 1 863 0 1 180 0 1 1319 3 2 519 1 2 98 0 5 232 0 1 89 18 22 13 0 1 482 4 0 6 chain 128170 chr5 181538259 + 127219939 127221751 L1PA14 3548 + 1703 3446 14257 90 14 6 241 33 0 4 8 0 61 0 8 82 3 4 338 1 0 121 4 3 22 3 0 112 1 0 98 1 2 43 3 1 14 2 0 47 10 6 108 4 0 17 2 0 6 1 0 17 0 1 64 1 0 87 0 1 25 16 11 36 4 2 12 1 0 5 1 0 17 1 0 31 chain 15889 chr5 181538259 + 127225118 127225312 L1PA6 6164 + 5967 6161 61168 194 chain 141683 chr5 181538259 + 127244935 127246614 L1PA7 6471 + 4789 6470 12962 166 1 0 240 1 0 419 0 3 512 9 10 331 chain 189482 chr5 181538259 + 127268512 127270663 L1PA5 6144 + 403 2560 10142 839 2 1 391 0 6 100 0 1 819 chain 28765 chr5 181538259 + 127317528 127317882 L1PA6 6164 + 5783 6136 43681 220 15 14 119 chain 2271 chr5 181538259 + 127317884 127317910 L1PA6 6164 + 6136 6162 104904 26 chain 25831 chr5 181538259 + 127397891 127398231 L1PA8 5853 + 5520 5853 47972 44 1 0 45 2 0 69 6 5 5 1 0 52 2 1 19 2 1 92 chain 22015 chr5 181538259 + 127468376 127468643 AluSz 310 + 16 283 53812 267 chain 39142 chr5 181538259 + 127477521 127477953 L1PA2 6032 + 5599 6031 35255 432 chain 19211 chr5 181538259 + 127504710 127505075 THE1B 368 + 0 368 57336 108 122 117 7 0 8 128 chain 67381 chr5 181538259 + 127545037 127545779 L1PA3long 6157 + 5397 6147 24603 426 0 1 188 0 7 128 chain 10811 chr5 181538259 + 127567322 127567479 MER83B 357 + 152 308 68834 99 14 13 44 chain 99710 chr5 181538259 + 127569273 127570682 LTR12C 1709 + 0 1709 18332 338 0 43 83 5 4 23 0 1 112 5 6 102 3 118 7 1 0 123 0 28 16 26 30 59 5 6 13 1 0 5 3 1 97 44 13 76 1 2 84 1 0 4 0 1 44 0 1 13 0 142 23 20 19 72 chain 2226 chr5 181538259 + 127570091 127570117 LTR12C 1709 + 1133 1159 79607 26 chain 20379 chr5 181538259 + 127614466 127614695 L1PA5 6144 + 5903 6132 55914 229 chain 21497 chr5 181538259 + 127615458 127615812 THE1D 372 + 0 357 54516 153 67 71 116 1 0 17 chain 15870 chr5 181538259 + 127641377 127641548 L1PA3long 6157 + 5978 6149 61201 171 chain 3443 chr5 181538259 + 127674442 127674483 MLT2A1 477 + 437 477 95714 21 1 0 19 chain 457278 chr5 181538259 + 127674483 127680145 HERVL-int 5654 + 0 5635 4203 92 0 2 343 0 2 5 2 0 98 0 1 22 61 0 52 1 2 505 2 0 205 15 10 411 0 1 1632 10 6 601 0 14 510 5 6 95 0 6 136 0 6 553 1 0 118 0 1 171 1 14 15 chain 289119 chr5 181538259 + 127727534 127731573 L1PA10 4194 + 397 4141 7158 6 1 0 58 0 26 669 1 0 113 2 1 488 333 17 247 11 4 178 0 1 4 1 0 268 4 2 21 8 9 101 1 2 5 1 0 6 1 2 148 1 0 122 3 4 237 0 4 118 11 12 240 0 1 12 0 1 76 0 1 515 3 0 25 chain 3071 chr5 181538259 + 127842518 127842598 MER45A 178 + 99 177 99094 24 13 11 17 12 12 14 chain 5426 chr5 181538259 + 127863470 127863635 L1MB3 1562 + 1355 1507 83574 40 6 0 7 1 0 4 61 43 31 0 12 15 chain 134762 chr5 181538259 + 127879130 127880606 L1PA2 6032 + 4561 6023 13559 933 17 3 526 chain 10001 chr5 181538259 + 127915688 127915823 MER30 238 + 75 230 70420 33 4 18 26 0 6 72 chain 6296 chr5 181538259 + 128027924 128028048 MER53 195 - 33 156 80015 20 3 0 5 29 31 67 chain 57326 chr5 181538259 + 128032956 128033848 L1PA14 3548 + 2603 3465 27152 84 4 1 161 6 7 82 35 31 32 2 0 4 2 0 105 2 0 5 5 3 13 1 0 6 1 0 195 1 0 11 5 1 35 4 2 12 1 0 5 3 2 15 5 6 34 6 0 10 chain 499508 chr5 181538259 + 128043927 128050015 L1PA6 6164 + 0 6159 3145 448 8 0 119 1 0 118 17 18 84 0 17 36 0 1 287 16 17 282 4 5 297 0 1 1459 0 1 50 6 10 29 0 2 249 0 1 172 1 3 157 9 10 41 0 5 438 5 9 312 0 1 184 0 4 27 15 19 753 0 1 270 0 28 194 chain 12769 chr5 181538259 + 128051256 128051396 L1PA5 6144 + 5997 6137 65489 140 chain 10370 chr5 181538259 + 128095597 128095784 MER30 238 + 24 230 69670 84 34 50 38 5 8 26 chain 47568 chr5 181538259 + 128117577 128118357 L1PB2 3958 + 3073 3838 30454 136 1 5 55 1 0 38 11 9 20 6 5 17 0 3 17 1 0 61 2 0 13 4 0 89 1 6 10 9 0 60 7 6 32 0 4 22 19 18 6 1 0 7 4 0 34 3 1 20 7 0 7 2 8 18 1 0 38 chain 107681 chr5 181538259 + 128119680 128120869 L1PA3long 6157 + 4966 6157 17364 22 0 1 12 0 1 1155 chain 93170 chr5 181538259 + 128159217 128160383 L1PA7 6471 + 5267 6454 19161 40 0 5 33 0 1 275 8 11 34 12 24 114 0 1 502 9 8 139 chain 14018 chr5 181538259 + 128162842 128163058 MER30 238 + 0 238 63564 16 13 20 63 2 0 6 5 23 11 1 0 99 chain 7594 chr5 181538259 + 128198304 128198397 MER54A 897 + 63 156 75882 93 chain 9318 chr5 181538259 + 128250451 128250577 MSTA 426 + 2 133 71872 97 9 14 20 chain 69622 chr5 181538259 + 128267817 128268712 L1P3 4156 + 3239 4139 24091 73 0 1 231 5 9 20 1 6 30 1 0 224 1 0 274 2 0 7 2 1 24 chain 22681 chr5 181538259 + 128398703 128399045 THE1B 368 + 0 368 52847 44 0 15 113 3 2 22 1 0 4 37 50 118 chain 29164 chr5 181538259 + 128400807 128401161 THE1A 353 + 0 353 43104 110 1 0 243 chain 82892 chr5 181538259 + 128446849 128447892 MER11B 1079 + 0 1057 21046 316 5 22 199 0 1 4 6 5 89 12 5 126 4 6 103 0 1 156 0 1 23 chain 466324 chr5 181538259 + 128455665 128461952 L1PA8A 6298 + 90 6288 3953 10 3 0 19 19 10 18 1 0 10 2 1 31 2 0 15 10 7 10 1 0 8 1 0 5 38 31 33 20 18 19 6 0 36 54 33 17 2 0 11 1 0 3 1 0 266 5 7 115 11 12 4 1 0 103 0 3 186 6 5 122 0 3 957 14 5 183 7 1 101 1 2 122 14 24 233 0 7 73 0 4 399 3 0 33 1 0 144 6 7 14 0 1 205 1 0 97 46 44 105 14 6 448 0 2 88 44 0 125 0 1 133 6 4 345 0 5 310 2 1 89 0 1 98 1 3 183 0 1 82 1 0 240 0 7 49 2 0 5 7 9 31 chain 104246 chr5 181538259 + 128503350 128504847 THE1B-int 1605 + 18 1591 17789 89 0 3 64 0 24 76 14 20 103 0 64 18 4 3 206 61 48 26 8 2 126 4 5 210 25 22 40 6 7 319 0 1 64 1 0 33 chain 25428 chr5 181538259 + 128530964 128531510 L1PB1 5432 + 4922 5385 48587 115 16 16 49 0 3 13 103 40 10 2 0 9 1 0 42 1 0 18 1 0 42 2 1 16 23 12 19 8 5 14 2 0 24 1 0 15 chain 195328 chr5 181538259 + 128554568 128556755 L1PA5 6144 + 3920 6122 9870 702 1 0 148 0 12 509 0 4 827 chain 4641 chr5 181538259 + 128591750 128591827 MADE1 96 + 0 95 87587 29 1 2 15 4 21 28 chain 3180 chr5 181538259 + 128599446 128599512 L1MA4 2864 + 2740 2804 98094 27 14 12 25 chain 18039 chr5 181538259 + 128661542 128661862 THE1C 375 + 18 335 58619 29 13 4 19 17 18 12 14 15 68 1 2 28 7 10 112 chain 28177 chr5 181538259 + 128676595 128676953 THE1B 368 + 0 357 44597 172 1 0 185 chain 141120 chr5 181538259 + 128729399 128731256 L1PA8 5853 + 3152 5050 13019 62 1 0 94 10 10 363 5 11 31 38 0 184 0 2 18 0 53 10 0 15 203 0 1 397 2 0 23 5 9 65 1 0 151 0 5 147 1 0 4 2 0 40 chain 156150 chr5 181538259 + 128731344 128733369 HERVH-int 3825 + 1352 3825 11994 79 9 0 260 0 27 232 0 35 13 0 6 86 0 5 15 2 1 297 0 1 5 5 4 135 6 3 263 0 367 16 1 8 33 18 17 88 4 19 458 chain 30584 chr5 181538259 + 128795921 128796257 L1PA5 6144 + 4506 4842 41484 336 chain 44855 chr5 181538259 + 128823932 128824488 MER41A 554 + 0 554 31663 285 2 0 269 chain 267529 chr5 181538259 + 128847778 128851721 L1MA1 4479 + 278 4180 7775 40 2 1 23 0 2 7 3 2 42 29 23 148 1 0 18 0 2 64 0 1 133 12 0 9 8 16 80 0 1 336 0 1 138 38 26 29 31 35 227 2 3 156 1 2 40 1 2 27 0 2 107 0 3 66 0 4 68 4 0 255 2 1 15 0 1 75 12 12 81 1 0 66 1 0 106 2 0 27 6 5 40 0 1 19 2 0 92 1 0 27 2 0 8 1 0 164 2 0 21 4 1 72 1 0 14 48 55 62 1 0 7 3 0 131 1 8 140 2 1 46 1 0 24 2 0 16 1 0 71 1 0 19 2 0 14 1 0 70 1 0 17 1 0 5 9 5 115 8 7 29 2 0 32 1 0 12 1 0 11 3 1 9 7 0 8 chain 37212 chr5 181538259 + 128932957 128933434 LTR15 485 + 0 475 36605 58 3 1 66 4 0 25 0 2 125 0 4 158 3 0 17 0 1 18 chain 65855 chr5 181538259 + 128946230 128947010 L1P2 5180 + 1318 2099 24986 591 0 1 189 chain 41694 chr5 181538259 + 128953011 128953501 L1PA4 6152 + 5663 6151 33556 7 0 1 106 0 2 200 0 1 21 0 1 2 7 0 147 chain 111895 chr5 181538259 + 129035334 129036754 L1PA7 6471 + 5049 6469 16827 401 1 0 125 12 8 30 3 6 279 0 1 144 0 1 316 20 20 89 chain 3990 chr5 181538259 + 129039324 129039371 MLT1A 405 + 345 392 91518 47 chain 7400 chr5 181538259 + 129136155 129136253 L1PA10 4194 + 4056 4150 76393 4 1 0 56 3 0 34 chain 243858 chr5 181538259 + 129210059 129213191 L1PA7 6471 + 3297 6467 8382 213 0 1 6 6 7 56 6 9 41 5 3 284 10 9 5 0 3 237 0 2 352 0 4 140 0 8 77 0 1 155 0 1 4 1 0 40 1 0 64 5 4 219 1 0 107 0 1 181 1 2 91 10 5 86 1 4 30 1 14 31 1 2 340 0 1 29 0 1 80 5 12 37 26 24 147 chain 23900 chr5 181538259 + 129237600 129237886 L1PA7 6471 + 5843 6130 50941 60 5 0 139 0 6 82 chain 6691 chr5 181538259 + 129237887 129237959 L1PA7 6471 + 6130 6202 78669 72 chain 9206 chr5 181538259 + 129247896 129248028 MER85 139 + 5 139 72113 6 0 1 81 11 12 34 chain 13135 chr5 181538259 + 129249388 129249592 L1PA8 5853 + 5637 5847 64874 8 0 8 26 1 0 9 9 10 42 2 1 19 1 0 87 chain 24775 chr5 181538259 + 129262177 129262489 L1PB1 5432 + 3913 4225 49624 312 chain 7194 chr5 181538259 + 129275461 129275559 Tigger3a 397 + 157 254 76963 77 1 0 20 chain 258766 chr5 181538259 + 129310765 129313644 L1PA3long 6157 + 3259 6155 8003 429 0 1 392 0 7 268 0 6 89 0 3 589 2 1 281 0 1 829 chain 21793 chr5 181538259 + 129352420 129352764 L1MA2 4263 + 2460 2824 54104 69 13 4 23 3 6 81 0 10 72 0 2 22 0 19 8 11 6 42 chain 24135 chr5 181538259 + 129407679 129408113 THE1A 353 + 0 353 50598 186 0 1 12 1 0 10 98 5 79 0 2 18 0 13 9 3 0 18 chain 12537 chr5 181538259 + 129451535 129451740 L1PA8 5853 + 5641 5847 65919 29 2 0 5 17 18 16 0 4 30 1 0 17 1 0 87 chain 5566 chr5 181538259 + 129534226 129534289 L1PA3long 6157 - 3633 3696 82958 63 chain 239796 chr5 181538259 + 129534289 129537011 L1PA3long 6157 + 3359 6099 8479 163 0 1 423 0 1 61 0 9 343 0 4 34 1 0 822 0 1 576 0 1 105 0 2 194 chain 70520 chr5 181538259 + 129545576 129546338 L1PA2 6032 + 5209 5971 23862 762 chain 69558 chr5 181538259 + 129547610 129548388 L1PA4 6152 + 4575 5352 24106 718 2 1 58 chain 21207 chr5 181538259 + 129561332 129561557 AluYb8 318 + 85 310 54874 225 chain 263215 chr5 181538259 + 129611748 129615249 L1P2 5180 + 1647 4708 7873 200 447 0 79 0 1 43 0 1 324 0 1 15 1 0 8 0 1 79 0 1 233 5 6 39 0 1 1007 0 1 1021 chain 21756 chr5 181538259 + 129634178 129634602 L1PA13 3608 + 3114 3522 54163 12 4 0 6 0 1 26 1 0 64 0 4 46 2 0 63 1 0 24 1 2 18 19 16 16 0 2 27 11 7 18 1 0 10 35 28 14 1 0 4 chain 37704 chr5 181538259 + 129727836 129728360 MER41B 635 + 0 521 36271 10 0 1 4 1 0 31 0 1 46 1 0 32 1 2 136 4 0 198 11 10 9 1 2 39 chain 66103 chr5 181538259 + 129751889 129752738 L1PA8 5853 + 5009 5853 24936 73 1 3 479 1 0 44 2 0 69 23 21 42 2 1 19 1 0 93 chain 172459 chr5 181538259 + 129816908 129818822 L1PA4 6152 + 3412 5335 10978 92 0 1 87 0 2 570 0 1 873 0 1 265 0 4 27 chain 98777 chr5 181538259 + 129866903 129868312 L1PA14 3548 + 67 1477 18441 6 1 0 10 12 7 58 5 0 69 1 0 15 7 6 11 21 30 20 2 0 64 0 4 348 14 18 116 24 17 298 0 4 230 5 7 72 chain 115349 chr5 181538259 + 129892030 129893462 L1PA7 6471 + 5047 6468 16336 58 0 1 315 0 1 75 20 6 119 0 5 504 0 1 71 5 4 102 1 0 8 1 0 142 2 0 9 chain 42813 chr5 181538259 + 129994559 129995046 L1PA4 6152 + 5653 6140 32880 487 chain 26887 chr5 181538259 + 130076816 130077107 L1PA3long 6157 + 5866 6157 46427 291 chain 257163 chr5 181538259 + 130086536 130089382 L1PA3long 6157 + 3313 6157 8054 860 0 1 971 9 2 157 0 4 849 chain 8069 chr5 181538259 + 130114402 130114492 5S 121 + 0 90 74702 90 chain 154754 chr5 181538259 + 130175146 130176982 L1PA7 6471 + 4599 6458 12069 415 0 1 282 0 4 111 4 5 170 3 4 119 2 0 211 0 9 231 0 1 80 0 1 172 4 11 32 chain 74403 chr5 181538259 + 130226664 130227503 L1PA5 6144 + 5302 6142 22983 39 0 1 800 chain 32475 chr5 181538259 + 130235619 130235993 L1PA5 6144 + 5750 6129 39961 27 0 6 108 1 0 238 chain 5434 chr5 181538259 + 130280226 130280292 MLT1A0 366 + 82 148 83541 66 chain 14005 chr5 181538259 + 130294842 130295200 THE1B 368 + 0 368 63590 48 31 38 20 28 29 34 1 0 28 0 3 9 28 31 67 50 47 14 chain 125078 chr5 181538259 + 130308396 130309791 L1P1 4361 + 2667 4068 14686 696 0 1 123 0 4 518 0 1 58 chain 53478 chr5 181538259 + 130317151 130317808 PABL_B 668 + 0 660 28405 281 1 0 5 0 9 55 1 0 128 6 0 112 0 2 68 chain 6293 chr5 181538259 + 130331252 130331329 MSTA-int 1630 + 1547 1624 80028 77 chain 15544 chr5 181538259 + 130358195 130358509 L1PA11 4918 + 4284 4578 61594 47 6 4 58 19 17 62 2 0 15 0 2 6 3 0 13 1 0 9 31 22 15 1 0 13 2 0 11 chain 263354 chr5 181538259 + 130391694 130395000 L1PA7 6471 + 3156 6469 7869 232 0 4 91 19 14 365 0 1 82 0 1 94 14 11 267 0 2 165 0 1 66 1 0 4 8 9 106 0 4 53 0 1 219 3 1 295 5 6 117 0 1 253 1 0 97 0 3 415 0 1 182 3 4 136 3 0 10 chain 107250 chr5 181538259 + 130397670 130399187 THE1B-int 1605 + 15 1599 17410 258 0 6 122 17 82 264 15 0 7 2 12 66 30 31 339 32 31 62 7 4 77 1 5 218 chain 220383 chr5 181538259 + 130418841 130421717 L1PA8A 6298 + 3401 6290 9030 38 0 4 32 2 0 86 1 2 76 0 2 52 14 7 177 1 2 478 0 1 412 0 4 135 5 6 298 0 2 69 3 6 153 0 1 25 0 4 19 0 3 30 1 8 35 8 5 60 14 5 535 5 6 28 1 0 83 chain 19916 chr5 181538259 + 130429310 130429569 AluY 311 + 14 276 56497 41 0 1 75 6 8 137 chain 13317 chr5 181538259 + 130430644 130430882 L1MC1 2226 + 1823 2047 64591 19 7 5 7 1 0 33 11 7 15 7 5 66 3 0 15 2 0 52 chain 5460 chr5 181538259 + 130435506 130435568 MER11D 897 + 835 897 83404 62 chain 148737 chr5 181538259 + 130446106 130448027 L1PA8 5853 + 3952 5853 12440 44 0 1 746 0 1 14 0 1 22 1 0 4 0 1 220 2 0 3 2 0 52 7 7 357 0 1 77 5 0 59 1 0 48 2 0 69 1 0 8 7 0 9 12 5 32 0 1 6 2 1 21 1 0 25 10 14 52 chain 62328 chr5 181538259 + 130460111 130460931 THE1B-int 1605 + 764 1599 25791 9 0 10 405 0 1 92 0 1 43 11 13 65 0 1 61 4 5 125 1 0 4 chain 6140 chr5 181538259 + 130504676 130504824 MER2 342 + 85 249 80563 15 1 7 6 1 0 27 48 59 50 chain 66091 chr5 181538259 + 130512650 130513449 L1PA7 6471 + 5653 6452 24939 328 6 6 321 7 0 6 0 7 131 chain 218837 chr5 181538259 + 130522811 130525377 L1PA5 6144 + 2849 5383 9071 315 48 1 36 0 1 51 0 2 224 4 7 697 0 7 1183 0 2 8 chain 3676 chr5 181538259 + 130555619 130555660 L1P4b 1366 + 605 646 93765 41 chain 229329 chr5 181538259 + 130565424 130568020 L1PA5 6144 + 3535 6139 8763 147 1 0 1100 1 3 456 0 1 55 0 6 70 0 2 376 9 7 381 chain 328424 chr5 181538259 + 130580262 130584575 L1PA8A 6298 + 824 6288 6245 278 0 4 19 20 23 283 0 1 471 3 1 183 0 1 78 0 1 4 6 5 268 4 0 61 1 2 44 0 1 206 5 9 249 5 7 283 31 11 82 1 0 18 1 5 282 0 1 89 0 1 81 1 2 15 0 1 114 0 1 11 0 5 330 0 1 26 0 1 5 1 0 285 0 2 143 4 1 114 0 1148 106 9 8 93 chain 105787 chr5 181538259 + 130593356 130594635 L1PA7 6471 + 5186 6465 17590 86 4 6 213 4 1 60 1 0 69 1 0 518 0 1 168 7 8 52 0 1 96 chain 31086 chr5 181538259 + 130595905 130597515 MLT2A1 477 + 1 477 41063 127 0 1 40 4 1 9 0 1 24 1 2 188 7 0 10 1165 38 35 chain 381540 chr5 181538259 + 130607967 130612869 L1PA7 6471 + 1483 6200 5458 27 0 1 453 4 5 57 0 2 123 219 0 484 5 0 914 0 4 151 1 0 538 15 20 20 0 1 795 0 1 6 3 16 174 8 15 8 7 0 323 1 0 23 4 5 170 1 12 258 0 1 110 chain 267491 chr5 181538259 + 130619932 130623006 L1PA5 6144 + 2885 5964 7776 285 0 1 30 0 1 280 0 1 760 0 1 619 0 1 4 1 0 556 0 1 539 chain 15292 chr5 181538259 + 130626488 130627157 L1PA2 6032 + 5374 6032 61925 316 11 0 342 chain 56939 chr5 181538259 + 130633382 130634069 LTR12_ 688 + 0 688 27289 513 1 0 27 0 1 24 0 1 122 chain 382043 chr5 181538259 + 130634097 130639227 HERV9-int 5642 + 0 5642 5449 795 1 0 297 80 0 14 3 0 430 2 3 124 0 1 467 6 7 45 0 2 117 4 0 313 0 13 379 10 945 281 0 1 496 1 14 85 344 14 388 1 0 226 6 4 31 1 0 7 5 3 22 2 1 59 1 0 14 28 5 19 4 0 3 2 0 17 chain 55720 chr5 181538259 + 130641823 130642483 LTR12_ 688 + 1 687 27657 120 0 25 265 0 2 100 1 0 174 chain 67174 chr5 181538259 + 130663993 130664738 L1PA4 6152 + 5396 6143 24654 127 0 1 477 0 1 141 chain 13336 chr5 181538259 + 130674752 130674909 L1PA7 6471 + 5466 5621 64572 64 2 0 91 chain 71637 chr5 181538259 + 130674910 130675758 L1PA7 6471 + 5621 6468 23626 518 1 0 329 chain 137236 chr5 181538259 + 130702760 130704679 L1PA5 6144 + 3778 5735 13322 12 5 6 33 292 330 328 1 0 886 0 2 107 1 3 31 3 0 89 1 0 130 chain 553437 chr5 181538259 + 130732094 130738109 L1PA2 6032 + 1 6016 519 6015 chain 26244 chr5 181538259 + 130745837 130746184 THE1A 353 + 6 353 47355 75 0 2 28 1 0 91 1 0 27 0 1 4 2 1 118 chain 123708 chr5 181538259 + 130746184 130747741 THE1A-int 1579 + 0 1562 14897 282 0 2 166 0 1 220 15 16 512 1 0 42 7 6 260 2 5 50 chain 14878 chr5 181538259 + 130780213 130780548 L1PB1 5432 + 5107 5420 62412 7 5 0 24 0 11 9 4 0 9 2 0 53 2 1 55 93 74 41 1 0 13 1 0 16 chain 465638 chr5 181538259 + 130783490 130788863 L1PA4 6152 + 0 5351 3973 127 0 14 542 0 3 1421 0 3 293 44 2 2946 chain 534418 chr5 181538259 + 130817737 130823759 L1PA3long 6157 + 1 6156 1644 151 0 1 619 5 133 83 22 25 939 1 0 2519 0 1 1530 0 1 153 chain 81923 chr5 181538259 + 130842543 130843589 MER11C 1089 + 0 1056 21262 250 0 1 62 0 4 69 1 0 146 65 66 92 0 4 5 1 0 38 0 1 127 0 1 190 chain 190476 chr5 181538259 + 130872723 130874805 L1PA3long 6157 + 4074 6157 10091 1633 0 1 449 chain 121434 chr5 181538259 + 130877709 130879286 THE1B-int 1605 + 0 1600 15271 428 3 28 179 21 28 243 0 3 238 29 3 13 0 14 423 chain 25278 chr5 181538259 + 130879291 130879638 THE1B 368 + 0 357 48820 44 0 6 6 0 9 229 11 7 12 1 0 44 chain 199934 chr5 181538259 + 130893878 130896402 L1PA6 6164 + 626 6162 9722 522 11 12 286 1 0 22 1 11 98 18 0 151 1 0 484 4 0 113 0 1 70 8 0 26 0 3047 60 19 4 629 chain 542781 chr5 181538259 + 130897566 130903669 L1PA3long 6157 + 10 6157 1154 116 0 14 140 0 1 232 0 1 474 15 17 442 1 0 523 0 1 1073 0 1 1698 1 24 332 0 1 992 0 1 64 chain 70414 chr5 181538259 + 130903678 130904552 L1PA6 6164 + 5282 6161 23890 28 5 9 235 0 1 109 1 0 40 0 2 5 2 0 205 11 13 64 1 0 168 chain 4328 chr5 181538259 + 130911132 130911238 L1MDb 1215 + 980 1084 89302 31 39 37 36 chain 39331 chr5 181538259 + 130918305 130918787 L1PA7 6471 + 5983 6467 35129 229 0 1 180 4 5 69 chain 427874 chr5 181538259 + 130924626 130929695 L1PA6 6164 + 823 6162 4778 265 1 4 354 1 0 203 0 277 95 39 7 305 0 1 122 0 1 343 0 4 335 0 2 48 0 1 1544 8 24 290 6 1 263 0 4 362 0 2 379 1 2 95 4 0 6 chain 437169 chr5 181538259 + 130929701 130935155 L1PA8A 6298 + 828 6290 4615 272 0 1 9 0 1 11 0 12 19 0 4 65 11 10 34 0 1 5 2 0 96 1 0 254 1 0 141 0 12 236 1 0 494 4 5 251 42 14 929 0 1 145 1 0 4 2 3 14 0 1 204 7 8 60 0 2 679 1 0 151 1 0 462 0 1 30 0 4 20 4 0 101 10 16 680 chain 19296 chr5 181538259 + 130949456 130949730 L1PB 1623 + 1179 1453 57242 109 5 9 9 4 1 139 1 0 7 chain 24275 chr5 181538259 + 130959096 130959407 THE1D-int 1627 + 1312 1620 50383 60 1 0 83 3 1 164 chain 41715 chr5 181538259 + 131004480 131005134 L1PB2 3958 + 3185 3838 33542 59 0 1 43 0 2 19 2 0 54 1 0 11 5 0 48 18 16 13 6 0 94 6 5 67 1 0 20 9 17 50 0 4 14 0 4 20 1 2 4 2 0 23 8 7 56 chain 11067 chr5 181538259 + 131008185 131008380 L1MA3 4352 + 104 296 68454 5 2 0 47 1 0 14 6 5 33 19 20 68 chain 208238 chr5 181538259 + 131043311 131048248 L1PA8 5853 + 2511 5391 9411 55 9 16 288 4 1 11 1 0 32 1 0 5 0 5 8 5 1 30 0 4 109 0 1 175 0 1 29 0 4 85 23 21 204 2 0 11 0 3 13 1 0 26 16 19 40 0 4 6 0 2 18 1 0 83 0 1 202 1 3 86 0 3 76 0 5 67 2109 0 684 8 27 26 6 8 84 15 16 282 chain 218202 chr5 181538259 + 131049693 131052228 L1PA4 6152 + 3456 5970 9086 989 23 0 84 0 1 173 0 1 1266 chain 475406 chr5 181538259 + 131087154 131092501 L1PA4 6152 + 0 5356 3740 736 1 0 189 0 4 1508 0 4 1250 4 0 71 0 1 1040 0 1 131 0 4 417 chain 90044 chr5 181538259 + 131123220 131124338 MER11A 1151 + 0 1151 19675 107 1 3 66 8 0 52 1 0 63 0 2 95 0 1 70 0 1 357 12 46 54 0 1 53 0 1 179 chain 74499 chr5 181538259 + 131124937 131126057 L1PREC2 3366 + 1848 2963 22964 66 0 11 48 0 2 62 3 0 114 3 4 94 0 1 137 1 0 205 4 5 110 0 7 34 6 4 54 2 1 18 6 7 18 1 0 4 3 0 13 29 21 15 16 11 8 2 0 22 11 8 11 chain 6909 chr5 181538259 + 131127884 131127968 LTR12C 1709 + 1293 1377 77925 84 chain 49138 chr5 181538259 + 131127991 131128558 L1PA5 6144 + 4696 5279 29889 71 7 23 489 chain 5355 chr5 181538259 + 131132142 131132249 MER63D 473 + 1 108 83933 14 24 23 39 1 2 29 chain 5729 chr5 181538259 + 131139019 131139098 L1MB2 1706 + 1583 1660 82225 15 1 0 13 1 0 49 chain 21791 chr5 181538259 + 131143586 131144036 L1PA7 6471 + 6083 6467 54105 18 158 78 118 8 21 63 0 1 85 chain 48523 chr5 181538259 + 131144859 131145428 L1PA6 6164 + 5432 6007 30110 400 7 6 119 0 7 43 chain 12827 chr5 181538259 + 131145428 131145582 L1PA6 6164 + 6010 6162 65402 51 0 1 92 3 0 8 chain 20908 chr5 181538259 + 131151133 131151580 LTR35 598 + 49 495 55243 39 26 35 12 26 16 44 12 17 51 3 0 58 48 49 64 4 0 16 7 8 37 chain 12729 chr5 181538259 + 131221191 131221416 MER30 238 + 0 238 65567 27 20 21 59 4 19 27 1 7 5 6 0 28 3 0 45 chain 4818 chr5 181538259 + 131238147 131238211 L1PA8 5853 + 5697 5760 86608 43 2 1 19 chain 435529 chr5 181538259 + 131344051 131349149 L1PA5 6144 + 4 5142 4654 117 0 14 21 0 12 35 0 1 4 1 0 86 0 1 571 0 2 120 0 1 39 1 2 4 1 0 136 9 0 92 0 1 145 1 6 592 3 0 944 0 6 241 1 0 683 0 3 66 8 10 382 0 4 460 0 2 335 chain 41204 chr5 181538259 + 131409367 131410670 L1MA1 4479 + 3482 4151 33838 38 3 0 41 0 1 4 1 0 108 1 3 32 10 9 21 2 0 16 1 0 8 0 5 58 13 14 19 1 0 88 9 5 59 636 20 16 11 0 31 1 0 29 2 0 44 chain 18833 chr5 181538259 + 131421419 131421680 AluYk4 311 + 30 283 57736 93 0 3 6 34 22 89 0 1 39 chain 5317 chr5 181538259 + 131538149 131538215 MER2 342 + 140 206 84106 66 chain 33208 chr5 181538259 + 131585377 131586117 MER4A1 472 + 27 472 39341 148 320 4 56 1 22 215 chain 4504 chr5 181538259 + 131609617 131609667 ERV3-16A3_I-int 1541 + 1032 1082 88303 50 chain 19935 chr5 181538259 + 131619187 131619477 L1PA7 6471 + 6183 6465 56472 124 20 8 7 0 10 14 3 0 113 3 0 6 chain 5261 chr5 181538259 + 131716837 131716976 MER58A 224 + 39 180 84385 58 62 64 19 chain 75426 chr5 181538259 + 131734105 131735455 L1PA5 6144 + 4779 6130 22739 302 1 0 213 1 0 142 0 3 691 chain 39297 chr5 181538259 + 131740680 131741218 MER41A 554 + 12 554 35152 149 1 0 4 4 5 112 1 0 32 1 0 113 0 1 41 7 12 73 chain 16889 chr5 181538259 + 131749694 131749910 Tigger3b 1229 + 942 1158 59924 150 1 0 39 0 1 26 chain 74150 chr5 181538259 + 131778356 131779159 L1PA2 6032 + 5229 6032 23047 803 chain 6294 chr5 181538259 + 131782181 131782266 Tigger1 2417 + 1466 1550 80023 35 1 0 49 chain 22648 chr5 181538259 + 131809534 131809831 AluSc5 308 + 8 297 52910 89 0 1 130 1 9 48 17 0 12 chain 11195 chr5 181538259 + 131829619 131829973 MLT1C 463 + 0 439 68252 20 9 7 89 138 226 21 21 23 28 3 0 25 chain 546029 chr5 181538259 + 131871019 131877156 L1PA4 6152 + 6 6151 968 365 0 2 207 1 0 2114 0 5 472 1 0 337 1 2 261 0 1 131 0 1 2104 1 0 114 6 7 22 chain 9124 chr5 181538259 + 131902541 131902655 MSTA 426 + 311 426 72297 105 0 1 9 chain 47379 chr5 181538259 + 131904570 131905129 L1PA7 6471 + 5889 6459 30509 348 6 12 144 0 5 61 chain 34432 chr5 181538259 + 131905151 131905694 L1PA15 4387 + 1376 1933 38409 19 2 0 5 0 1 123 0 1 149 75 86 19 0 4 9 1 0 141 chain 5240 chr5 181538259 + 131914626 131914700 MSTC 436 + 366 436 84500 17 4 0 53 chain 28137 chr5 181538259 + 131927863 131928163 AluYg6 310 + 0 300 44661 300 chain 189637 chr5 181538259 + 132106698 132108835 L1PA4 6152 + 3344 5495 10137 1369 0 1 568 0 4 15 1 8 75 0 1 22 0 1 87 chain 505322 chr5 181538259 + 132116475 132122795 L1PA7 6471 + 0 6426 2954 160 1 2 73 8 9 65 1 14 52 15 16 21 2 0 502 2 5 175 2 5 136 3 49 113 0 3 209 0 4 645 4 5 42 0 1 192 0 2 139 0 2 175 0 1 19 1 0 131 0 3 141 1 0 169 0 1 111 0 3 247 0 1 4 0 36 18 21 4 293 18 10 430 4 1 333 0 3 99 0 1 211 0 3 532 1 3 140 1 0 257 12 11 111 0 6 49 2 1 227 chain 108384 chr5 181538259 + 132139227 132140910 L1PB1 5432 + 3761 5422 17268 271 0 1 68 4 3 211 0 2 80 9 7 36 9 6 27 0 5 145 1 2 82 3 1 171 46 0 156 18 75 4 1 0 24 9 6 13 6 2 9 2 0 52 22 20 25 0 1 13 95 75 19 1 0 18 1 0 13 1 0 18 chain 342841 chr5 181538259 + 132158768 132162519 L1PA3long 6157 + 2405 6157 6013 492 0 1 3259 chain 3666 chr5 181538259 + 132180779 132180821 tRNA-Cys-TGY 72 + 1 43 93860 42 chain 3617 chr5 181538259 + 132352785 132353063 L2a 937 + 182 534 94294 24 214 288 40 chain 468641 chr5 181538259 + 132397848 132404547 L1PA6 6164 + 17 6150 3891 182 10 11 106 293 98 35 19 0 11 66 77 29 79 3 16 17 18 85 0 3 5 3 0 47 22 1 44 5 22 123 0 4 19 6 0 94 0 1 4 1 0 106 1 7 25 5 6 124 73 95 420 7 0 141 0 1 279 22 20 46 0 5 31 1 0 659 0 1 169 2 1 1177 0 4 518 10 0 133 336 15 5 0 1 277 1 15 121 0 3 405 0 1 284 chain 4161 chr5 181538259 + 132461294 132461347 L1MB2 1706 + 1638 1694 90379 24 0 3 29 chain 7961 chr5 181538259 + 132468155 132468254 HY1 111 + 9 110 74972 25 1 3 73 chain 559248 chr5 181538259 + 132513964 132519996 L1PA2 6032 + 0 6028 192 6021 4 0 7 chain 20138 chr5 181538259 + 132524884 132525262 THE1C 375 + 0 375 56207 19 2 0 41 8 12 6 4 0 24 6 7 74 50 50 10 6 0 16 0 4 112 chain 7010 chr5 181538259 + 132555239 132555331 L1MB3 1562 + 1283 1377 77566 32 0 3 33 1 0 26 chain 17833 chr5 181538259 + 132563754 132564080 MSTA 426 + 26 405 58845 82 24 52 46 4 0 6 43 45 39 0 20 55 1 8 26 chain 38658 chr5 181538259 + 132601666 132602127 L1PA7 6471 + 6000 6458 35601 118 1 0 179 3 1 160 chain 91618 chr5 181538259 + 132605681 132606806 L1P3 4156 + 3005 4139 19391 59 0 1 410 0 4 15 1 0 52 0 4 150 0 4 403 2 0 9 9 8 15 chain 14342 chr5 181538259 + 132630751 132630937 MER107 203 + 2 203 63128 106 0 1 37 1 6 18 0 9 24 chain 151913 chr5 181538259 + 132723091 132724803 L1PA5 6144 + 4424 6144 12235 648 0 1 410 0 3 198 9 13 447 chain 227053 chr5 181538259 + 132803778 132806365 L1PA6 6164 + 3563 6162 8840 94 1 0 84 1 0 559 0 2 244 0 1 546 0 1 137 0 1 61 0 5 14 0 4 837 0 1 4 1 0 4 chain 3470 chr5 181538259 + 132806616 132806655 LTR54 533 + 425 464 95455 39 chain 7750 chr5 181538259 + 132848576 132848666 5S 121 + 0 90 75490 90 chain 5277 chr5 181538259 + 132915881 132915967 LTR26E 604 + 122 205 84299 59 14 11 13 chain 11831 chr5 181538259 + 133047785 133048121 LTR12D 1347 + 584 752 67150 109 181 13 46 chain 9233 chr5 181538259 + 133085250 133085364 L1MC2 1988 + 1525 1639 72047 114 chain 82301 chr5 181538259 + 133108818 133109794 SVA_F 1814 + 855 1814 21175 32 0 1 49 1 0 10 79 15 49 1 0 127 0 48 628 chain 3973 chr5 181538259 + 133108937 133108989 SVA_F 1814 + 1037 1089 50331 52 chain 23775 chr5 181538259 + 133144224 133144599 THE1B 368 + 0 368 51155 15 2 0 32 0 1 60 3 7 6 2 0 48 31 24 94 7 6 75 chain 38843 chr5 181538259 + 133146954 133147472 MER41A 554 + 2 529 35473 85 5 6 55 0 1 35 5 6 4 1 0 269 2 9 57 chain 102828 chr5 181538259 + 133238893 133240300 LTR12C 1709 + 84 1709 17973 94 0 4 95 7 0 8 2 11 42 0 43 83 2 0 9 15 0 246 0 118 271 1 0 8 4 2 28 1 0 62 24 0 16 11 4 129 0 3 79 0 101 81 5 4 84 chain 3462 chr5 181538259 + 133329211 133329256 MER20B 722 + 1 45 95528 14 1 0 30 chain 63595 chr5 181538259 + 133345620 133346408 L1PA8 5853 + 5071 5853 25504 122 0 3 172 2 0 194 1 0 48 2 0 70 1 0 8 1 0 52 2 1 19 1 0 93 chain 3797 chr5 181538259 + 133394824 133395285 LTR12C 1709 + 776 1542 92870 14 26 26 21 1 0 13 0 119 17 346 533 23 chain 26636 chr5 181538259 + 133466268 133466559 AluYk4 311 + 8 299 46781 291 chain 5350 chr5 181538259 + 133471129 133471200 MER96B 391 - 235 306 83958 27 1 0 18 0 1 25 chain 3472 chr5 181538259 + 133503012 133503054 MLT1E2 623 + 581 623 95442 42 chain 3782 chr5 181538259 + 133533558 133533609 MLT1D 503 + 449 499 92978 46 1 0 4 chain 41880 chr5 181538259 + 133535237 133535728 MER9a1 513 + 0 513 33438 249 0 22 242 chain 564822 chr5 181538259 + 133583288 133589299 L1HS 6032 + 3 6032 98 150 0 2 582 0 16 5279 chain 33781 chr5 181538259 + 133620806 133621737 L1PB1 5432 + 4841 5417 38864 109 7 15 137 17 15 21 355 20 11 2 0 51 2 1 16 1 0 43 1 0 16 1 0 4 19 8 19 11 8 11 2 0 24 1 0 21 1 0 11 1 0 11 1 0 4 chain 268091 chr5 181538259 + 133627971 133632158 L1PA7 6471 + 3148 6469 7758 45 0 17 293 998 116 1055 0 4 276 4 7 152 1 3 140 13 5 88 1 0 275 1 0 74 0 1 616 0 1 145 2 0 8 chain 3509 chr5 181538259 + 133636552 133636655 MIR 256 + 98 200 95174 22 52 51 29 chain 25393 chr5 181538259 + 133647832 133648176 THE1B 368 + 0 368 48635 39 1 16 114 1 0 29 0 2 106 5 13 49 chain 10478 chr5 181538259 + 133849565 133849694 MER85 139 + 0 139 69454 95 0 10 34 chain 161226 chr5 181538259 + 133851775 133853642 L1P2 5180 + 531 2418 11668 38 0 2 25 1 0 187 0 15 442 1 2 4 1 0 179 0 5 167 0 1 563 2 0 257 chain 92826 chr5 181538259 + 134012606 134015270 L1PA16 3655 + 2109 3619 19208 130 2 0 18 4 5 7 2 0 18 1 2 375 18 17 14 5 1 18 242 19 170 1 0 4 1 2 5 1 0 8 1 0 9 648 27 22 0 2 59 15 16 34 9 12 97 6 5 13 1 28 17 300 0 26 21 19 270 3 0 14 23 0 11 5 0 16 chain 14482 chr5 181538259 + 134022584 134022775 MER61E 571 + 196 391 62916 71 0 5 28 1 0 91 chain 55210 chr5 181538259 + 134022789 134023484 L1PA8 5853 + 5156 5853 27804 12 0 3 331 1 0 62 1 0 45 2 0 69 11 16 45 3 2 19 3 2 91 chain 3334 chr5 181538259 + 134034139 134034175 MER4E1 777 + 664 700 96738 36 chain 30271 chr5 181538259 + 134069725 134070129 MER41A 554 + 10 427 41791 27 0 11 306 18 15 28 0 5 25 chain 3925 chr5 181538259 + 134153509 134153551 MER66B 489 + 295 337 91951 42 chain 8524 chr5 181538259 + 134323073 134323204 L1MC2 1988 + 166 302 73633 13 0 3 76 10 12 32 chain 4681 chr5 181538259 + 134413903 134413980 LTR49 580 + 490 570 87378 41 2 4 21 1 2 12 chain 22273 chr5 181538259 + 134600367 134600652 AluSc 308 + 12 288 53443 25 7 0 220 6 4 27 chain 52067 chr5 181538259 + 134612808 134613396 LTR10C 591 + 0 591 28859 510 0 2 44 1 2 33 chain 28237 chr5 181538259 + 134635282 134636351 LTR39 781 + 0 694 44507 24 0 2 10 30 26 49 0 11 164 314 232 29 15 16 55 303 0 76 chain 6737 chr5 181538259 + 134715483 134715579 U6 107 + 1 97 78520 57 0 1 5 4 3 30 chain 16143 chr5 181538259 + 134715582 134715849 L1PA8 5853 + 5588 5850 60822 20 2 0 57 18 17 6 1 0 10 1 2 40 2 1 19 2 1 89 chain 6880 chr5 181538259 + 134718999 134719093 Tigger3b 1229 + 597 710 78037 25 0 6 23 0 4 39 0 9 7 chain 22062 chr5 181538259 + 134848680 134848973 AluSp 311 + 1 298 53745 44 8 9 78 3 6 160 chain 4270 chr5 181538259 + 134885978 134886048 L1MA4 2864 + 2741 2809 89701 24 1 2 5 3 0 37 chain 6111 chr5 181538259 + 134985169 134985282 L1PB3 3668 + 3434 3528 80690 44 20 4 18 0 1 5 4 0 22 chain 27663 chr5 181538259 + 135089503 135089870 THE1C 375 + 0 374 45378 135 0 4 42 1 2 20 7 10 133 4 3 25 chain 39461 chr5 181538259 + 135097077 135097680 L1PB3 3668 + 2987 3568 35034 11 3 0 84 1 4 4 1 0 158 0 1 42 1 0 81 2 1 5 0 1 7 6 5 85 22 6 13 1 0 9 1 0 24 3 1 39 chain 16849 chr5 181538259 + 135181311 135181531 MER30 238 + 2 238 59975 106 5 21 109 chain 12569 chr5 181538259 + 135302603 135302776 MER44A 345 + 128 322 65857 13 1 0 27 0 21 63 2 3 67 chain 27121 chr5 181538259 + 135364077 135364433 L1PA6 6164 + 5842 6162 46093 258 37 1 61 chain 124460 chr5 181538259 + 135408566 135409983 SVA_C 1631 + 22 1622 14785 518 27 0 130 0 40 9 0 40 78 0 42 31 0 46 33 0 41 269 0 1 322 chain 21890 chr5 181538259 + 135730575 135730833 THE1B-int 1605 + 5 264 53979 196 0 1 62 chain 121040 chr5 181538259 + 135837871 135839664 THE1B-int 1605 + 0 1605 15343 430 38 21 258 1 2 242 10 0 62 1 2 138 1 0 4 181 17 24 3 4 63 1 2 336 chain 6912 chr5 181538259 + 135925058 135925146 MER77 626 + 494 581 77911 67 1 0 20 chain 22485 chr5 181538259 + 135955505 135955894 MSTA 426 + 0 426 53139 163 9 5 37 36 35 46 29 71 69 chain 22272 chr5 181538259 + 135968462 135968791 THE1B 368 + 28 368 53446 9 0 5 130 3 2 27 9 8 4 0 1 14 7 15 44 2 1 80 chain 3086 chr5 181538259 + 136075349 136075384 MER5A 189 + 38 73 98901 35 chain 12458 chr5 181538259 + 136183657 136183878 MER30 238 + 0 232 66050 12 26 27 68 5 14 71 9 10 30 chain 83627 chr5 181538259 + 136219930 136220979 MER11A 1151 + 0 1151 20886 55 0 99 76 1 0 62 12 8 26 0 2 477 2 1 56 3 0 26 0 9 20 0 1 233 chain 11082 chr5 181538259 + 136247030 136247218 MER75 514 + 74 252 68439 106 15 0 11 17 22 39 chain 523374 chr5 181538259 + 136289171 136295026 L1PA4 6152 + 0 5879 2125 142 1 15 430 0 1 642 0 1 1952 1 0 722 0 1 96 0 4 1096 0 2 415 1 0 94 0 1 33 1 2 168 1 2 60 chain 30113 chr5 181538259 + 136301373 136301825 LTR7B 505 + 0 495 41930 105 2 12 58 0 38 12 3 27 28 29 0 42 0 1 42 1 0 23 0 1 52 18 17 37 chain 288031 chr5 181538259 + 136301835 136305348 HERVH-int 3825 + 0 3825 7196 164 0 2 227 1 4 59 61 0 29 1 57 13 0 3 12 1 0 10 1 0 24 1 93 81 2 1 594 1 3 630 0 4 1033 36 38 39 0 210 96 23 23 149 0 2 225 chain 29091 chr5 181538259 + 136306562 136307014 LTR7B 505 + 0 495 43202 95 13 23 57 0 38 12 34 27 26 0 2 42 0 1 42 1 0 23 0 1 52 14 13 41 chain 45776 chr5 181538259 + 136325632 136326284 MER51C 639 + 0 613 31178 17 55 0 122 13 27 42 0 1 54 0 1 349 chain 37293 chr5 181538259 + 136387023 136387821 LTR10F 562 + 0 562 36552 33 0 4 152 2 67 112 37 23 107 291 0 64 chain 41356 chr5 181538259 + 136411028 136411493 L1HS 6032 + 5586 6032 33756 431 19 0 15 chain 6639 chr5 181538259 + 136413881 136413959 LTR5_Hs 974 + 0 78 78847 78 chain 131559 chr5 181538259 + 136444030 136445636 LTR12C 1709 + 0 1709 13866 33 1 0 449 2 1 167 0 119 68 1 0 47 18 4 62 0 1 161 1 0 4 5 3 105 0 4 399 1 0 82 chain 141314 chr5 181538259 + 136449498 136451762 L1PB1 5432 + 3474 5400 12998 7 1 0 5 2 0 119 0 1 123 0 7 226 1 0 51 4 0 38 0 4 708 2 1 282 0 1 5 1 0 51 1 6 5 1 0 24 0 2 7 20 11 9 2 0 6 316 0 47 2 1 16 2 1 37 6 5 16 1 0 4 2 0 11 9 0 16 6 5 14 2 0 24 1 0 21 1 0 9 chain 7244 chr5 181538259 + 136476524 136476628 L1PB1 5432 + 4604 4702 76828 22 8 0 22 0 2 52 chain 18633 chr5 181538259 + 136476629 136476859 L1PB1 5432 + 4705 4934 57961 99 1 0 130 chain 11805 chr5 181538259 + 136476859 136477014 L1PB1 5432 + 4938 5095 67195 143 0 2 12 chain 8976 chr5 181538259 + 136477251 136477483 L1PB1 5432 + 5102 5296 72614 12 1 0 21 1 0 9 1 0 14 5 1 9 2 0 44 1 0 4 30 29 28 34 7 16 chain 2266 chr5 181538259 + 136477590 136477620 L1PB1 5432 + 5393 5422 104915 11 1 0 18 chain 3111 chr5 181538259 + 136564456 136564515 LTR12F 595 + 185 235 98689 25 14 5 20 chain 48607 chr5 181538259 + 136735487 136736100 LTR30 714 + 0 630 30086 241 8 13 80 0 1 108 7 18 169 chain 26802 chr5 181538259 + 136737042 136737419 LTR7 482 + 0 469 46538 101 13 63 36 19 61 208 chain 12120 chr5 181538259 + 136739242 136739508 LTR7 482 + 0 365 66628 53 0 6 42 15 14 17 36 129 24 26 27 53 chain 8905 chr5 181538259 + 136739509 136739612 LTR7 482 + 367 470 72774 103 chain 87910 chr5 181538259 + 136745111 136746594 L1MA1 4479 + 1962 4142 20067 19 0 3 105 1 0 8 2 3 15 10 15 258 25 13 5 0 1 41 77 21 133 1 0 60 11 10 96 9 7 29 1 0 6 0 1 97 3 10 10 0 1 6 0 3 20 1 0 27 2 0 39 83 838 85 9 5 10 0 4 112 1 0 28 4 2 34 chain 103323 chr5 181538259 + 136811925 136813453 L1PB1 5432 + 3929 5424 17914 23 0 1 481 0 1 174 0 4 15 29 26 51 0 2 34 0 1 63 2 1 9 4 0 231 0 1 6 1 0 50 16 14 17 1 0 13 16 11 11 3 1 50 2 1 16 1 0 43 1 0 21 19 7 19 8 5 14 2 0 24 1 0 20 2 1 13 1 0 16 1 0 4 chain 22327 chr5 181538259 + 136857181 136857479 L1PA7 6471 + 6176 6469 53369 57 6 1 73 2 0 5 9 11 146 chain 67110 chr5 181538259 + 136916713 136917451 L1PA3long 6157 + 1561 2299 24680 738 chain 32383 chr5 181538259 + 136921279 136921780 L1PA16 3655 + 3067 3573 40053 45 2 0 5 0 2 85 1 0 81 15 21 111 1 2 88 37 36 30 chain 99653 chr5 181538259 + 136932280 136933510 L1PA7 6471 + 1284 2521 18340 73 1 0 4 0 1 396 3 4 55 0 3 174 0 2 172 2 1 222 0 1 49 0 1 79 chain 55436 chr5 181538259 + 136951703 136952320 L1PA4 6152 + 5533 6151 27739 284 0 1 333 chain 20818 chr5 181538259 + 136980398 136980677 THE1B 368 + 0 306 55338 90 15 0 78 2 1 27 0 43 67 chain 35238 chr5 181538259 + 136996590 136997060 LTR12F 595 + 0 595 37873 91 1 144 11 1 0 21 23 6 322 chain 104063 chr5 181538259 + 137007021 137008294 L1PA7 6471 + 5190 6465 17812 306 0 1 4 8 0 53 0 1 47 8 15 86 0 1 381 0 1 51 1 0 328 chain 56418 chr5 181538259 + 137059451 137060320 L1PA15 4387 + 3523 4366 27450 187 12 4 99 0 2 18 9 5 27 1 5 15 2 0 48 1 0 7 0 2 162 2 1 25 1 0 54 2 1 24 4 0 7 2 1 50 7 4 42 2 0 16 5 0 27 1 0 10 chain 28885 chr5 181538259 + 137062952 137063257 AluYb8 318 + 0 306 43504 108 0 1 197 chain 13199 chr5 181538259 + 137208471 137208654 L1PA16 3655 + 3354 3537 64782 53 1 0 8 16 17 105 chain 42171 chr5 181538259 + 137259147 137259651 L1PA7 6471 + 5968 6468 33267 493 4 0 7 chain 12514 chr5 181538259 + 137463172 137463374 L1MA2 4263 + 3902 4114 65961 45 0 1 8 11 9 55 0 19 19 7 0 47 1 0 9 chain 12672 chr5 181538259 + 137473838 137474085 L1PB1 5432 + 5063 5296 65674 40 1 0 10 2 1 24 1 0 9 27 20 50 6 5 15 1 0 44 4 2 13 chain 337911 chr5 181538259 + 137526014 137529825 L1PA5 6144 + 2330 6144 6110 865 1 2 82 1 0 324 0 2 90 0 1 2448 chain 532467 chr5 181538259 + 137535123 137543420 L1PA5 6144 + 0 6139 1733 475 0 1 664 12 7 251 0 1 36 4 3 4 0 1 392 2170 0 2256 0 10 813 3 4 373 10 14 834 chain 298277 chr5 181538259 + 137548171 137553000 L1PA7 6471 + 2829 6469 6880 438 0 2 656 1282 0 84 1 0 78 1 105 15 9 1 69 0 2 1178 0 1 156 1 4 89 2 0 86 1 0 316 12 5 22 0 1 178 0 1 143 2 0 10 chain 2074 chr5 181538259 + 137549279 137549301 L1PA5 6144 + 4890 4912 105902 22 chain 108084 chr5 181538259 + 137549301 137550531 L1PA5 6144 + 4913 6144 17313 243 0 1 477 1 0 360 5 6 144 chain 89568 chr5 181538259 + 137553788 137554956 L1PB1 5432 + 3240 4407 19749 47 1 0 441 1 4 45 0 1 127 0 2 223 4 15 13 20 1 210 0 2 36 chain 5369 chr5 181538259 + 137668822 137668924 MER63A 208 + 116 208 83855 27 12 5 13 6 0 6 0 3 38 chain 98776 chr5 181538259 + 137686898 137688159 SVA_E 1901 + 685 1879 18442 44 7 6 10 126 59 8 1 0 5 1 0 110 4 0 32 5 1 8 0 12 115 1 0 784 chain 9429 chr5 181538259 + 137686959 137687085 SVA_E 1901 + 824 974 34528 56 0 1 4 14 38 35 2 1 15 chain 3900 chr5 181538259 + 137689129 137689178 L1PA17 2846 + 2645 2693 92123 4 1 0 44 chain 26776 chr5 181538259 + 137704123 137704404 AluYb9 318 + 20 301 46574 281 chain 3246 chr5 181538259 + 137746557 137746596 L2a 937 + 727 766 97506 39 chain 2786 chr5 181538259 + 137764659 137764836 L1M1 2793 + 2366 2542 101720 24 126 125 27 chain 146964 chr5 181538259 + 137767104 137770498 L1MA3 4352 + 858 4076 12545 5 2 0 13 1 0 58 0 1 57 0 1 12 11 9 67 1 0 17 36 35 31 1242 1034 115 1 0 39 1 0 227 4 0 113 0 1 241 35 36 59 6 1 17 0 1 244 0 2 5 9 7 198 0 1 25 1 4 120 0 12 66 5 6 125 7 35 178 chain 86085 chr5 181538259 + 137767544 137768626 MER11B 1079 + 0 1074 20419 135 0 1 576 0 5 24 10 0 26 0 2 107 0 1 35 5 6 65 0 2 48 0 1 21 11 0 19 chain 6424 chr5 181538259 + 137782617 137782720 MER65A 464 + 112 212 79593 66 15 12 22 chain 442036 chr5 181538259 + 137783369 137789095 L1PA6 6164 + 493 6160 4536 15 0 1 4 30 24 28 111 35 145 21 0 42 0 17 141 13 32 61 12 13 4 1 0 46 57 56 222 0 2 943 0 2 851 8 8 4 0 1 41 7 11 288 1 0 106 2 0 102 4 3 236 3 0 1328 0 3 7 0 1 223 0 1 4 1 0 153 4 0 288 1 0 107 0 10 52 3 0 6 chain 35169 chr5 181538259 + 137805455 137805888 MER57A1 433 + 0 433 37911 277 0 1 13 1 0 142 chain 62453 chr5 181538259 + 137842834 137843556 L1PA7 6471 + 5747 6467 25761 389 0 1 322 3 0 8 chain 542747 chr5 181538259 + 137968597 137974618 L1PA3long 6157 + 0 6156 1156 152 6 7 399 1 0 183 0 1 34 1 129 2991 0 2 48 0 1 413 0 2 793 0 5 650 7 3 343 chain 90921 chr5 181538259 + 137976543 137977594 MER11C 1089 + 0 1059 19520 317 0 4 369 0 4 365 chain 23521 chr5 181538259 + 138045972 138046315 THE1B 368 + 0 356 51553 44 6 21 103 1 0 6 1 0 30 3 0 5 0 3 30 0 1 44 2 1 68 chain 2947 chr5 181538259 + 138067278 138067309 U2 167 + 0 31 100406 31 chain 112451 chr5 181538259 + 138070034 138071356 SVA_D 2077 + 535 2074 16758 25 0 40 87 0 40 181 0 85 41 10 12 185 0 78 68 0 13 11 41 0 673 chain 2879 chr5 181538259 + 138070642 138070683 SVA_D 2077 + 1135 1176 37817 41 chain 10810 chr5 181538259 + 138079224 138079639 MER63B 433 + 51 430 68838 74 35 0 4 27 0 54 63 65 16 7 12 14 94 113 27 chain 63750 chr5 181538259 + 138143518 138144456 LTR12 884 + 0 884 25467 35 0 1 145 0 25 77 1 20 74 2 0 126 6 8 47 103 0 248 14 18 60 chain 7104 chr5 181538259 + 138203207 138203422 L1MC2 1988 + 1783 1988 77252 23 0 2 30 101 91 12 1 0 5 1 0 42 chain 7738 chr5 181538259 + 138205903 138205997 Tigger4a 237 + 143 237 75518 94 chain 84904 chr5 181538259 + 138267838 138270690 L1PB1 5432 + 4168 5413 20639 19 2 0 151 295 0 87 0 1 25 6 1 174 357 0 70 0 4 227 613 0 163 20 27 21 1 0 9 345 20 53 2 1 16 1 0 44 1 0 7 0 1 7 3 0 7 14 6 18 24 19 24 1 0 21 1 0 13 1 0 9 chain 6051 chr5 181538259 + 138310941 138311311 L1MB2 1706 + 333 645 80893 14 0 5 47 256 206 10 13 0 30 chain 5816 chr5 181538259 + 138316947 138317019 MER52D 1964 + 1892 1964 81849 72 chain 3916 chr5 181538259 + 138408926 138408975 MER106A 234 + 102 153 92012 36 0 2 13 chain 4038 chr5 181538259 + 138477011 138477125 L1MB7 1623 + 1305 1415 91160 20 1 0 10 52 49 31 chain 11842 chr5 181538259 + 138485127 138485275 FAM 185 + 17 166 67128 126 0 1 22 chain 2829 chr5 181538259 + 138531367 138531397 MSTD 398 + 356 386 101401 30 chain 9187 chr5 181538259 + 138623477 138623585 U13_ 108 + 0 108 72145 108 chain 8233 chr5 181538259 + 138687915 138688029 MLT1C 463 + 2 116 74319 18 1 2 32 1 0 62 chain 12065 chr5 181538259 + 138958575 138958724 Tigger4a 237 + 22 169 66731 126 2 0 21 chain 2702 chr5 181538259 + 138965967 138966022 MER94 134 + 78 133 102337 13 14 14 28 chain 7075 chr5 181538259 + 138992675 138992867 L1PB1 5432 + 5260 5430 77349 15 6 5 16 1 0 15 8 0 15 25 18 26 1 0 23 13 11 18 1 0 4 1 0 4 chain 22533 chr5 181538259 + 139014113 139014383 AluSp 311 + 28 298 53063 270 chain 4072 chr5 181538259 + 139030805 139030867 Tigger6a 1079 + 840 907 90941 44 0 6 5 2 1 11 chain 151488 chr5 181538259 + 139055631 139057332 SVA_D 2077 + 0 2077 12255 19 5 0 668 0 40 191 0 36 51 0 305 78 0 1 4 18 17 667 chain 59512 chr5 181538259 + 139084162 139084795 L1HS 6032 + 5397 6030 26504 633 chain 115402 chr5 181538259 + 139097398 139099636 L1MA2 4263 + 2520 4105 16327 49 0 7 18 312 0 50 3 0 6 0 1 15 3 11 20 5 0 160 0 1 49 2 3 171 0 1 479 26 20 23 327 0 57 4 3 52 5 0 90 3 0 19 0 1 14 3 4 122 1 0 25 0 1 39 5 4 23 22 11 36 chain 132454 chr5 181538259 + 139111826 139113290 SVA_C 1631 + 16 1608 13787 14 2 1 771 2 129 4 0 1 67 0 1 604 chain 54341 chr5 181538259 + 139164771 139166153 MER4E 760 + 0 760 28108 21 0 3 127 11 14 44 0 1 14 3 0 22 2 0 25 11 4 94 0 2 73 1 0 40 0 4 80 623 0 155 3 2 25 0 2 8 chain 14385 chr5 181538259 + 139167981 139168198 Tigger3c 601 + 308 526 63061 133 0 29 9 28 0 47 chain 135965 chr5 181538259 + 139169851 139171717 SVA_C 1631 + 24 1631 13440 11 6 0 505 40 0 183 1 0 6 40 0 123 4 0 58 2 0 3 1 0 32 1 0 4 173 15 38 2 0 8 1 0 8 1 0 233 3 1 379 chain 2368 chr5 181538259 + 139170603 139170643 SVA_C 1631 + 769 809 70413 40 chain 2124 chr5 181538259 + 139170883 139170939 SVA_C 1631 + 797 852 70702 40 1 0 15 chain 6469 chr5 181538259 + 139170943 139171044 SVA_C 1631 + 990 1087 74416 12 9 6 10 1 0 69 chain 25550 chr5 181538259 + 139189160 139189546 MER1A 529 + 0 408 48402 19 33 51 10 17 17 270 0 4 37 chain 6820 chr5 181538259 + 139193189 139193270 MER106A 234 + 70 151 78241 81 chain 125305 chr5 181538259 + 139223877 139225594 SVA_D 2077 + 29 2070 14655 8 0 5 261 0 1 247 0 40 247 0 575 463 307 0 21 0 10 163 chain 11362 chr5 181538259 + 139230873 139231072 LTR23 429 + 154 333 67983 49 0 1 33 13 7 21 9 4 12 10 0 52 chain 21468 chr5 181538259 + 139238991 139239477 LTR26B 539 + 0 394 54555 42 6 11 128 130 30 29 49 52 102 chain 7969 chr5 181538259 + 139438332 139438481 MER30 238 + 90 238 74950 19 4 0 7 40 43 79 chain 5525 chr5 181538259 + 139447906 139447970 U5 65 + 0 64 83133 64 chain 59284 chr5 181538259 + 139502942 139503773 LTR12 884 + 0 884 26575 79 0 66 84 0 2 59 0 88 345 103 0 161 chain 474031 chr5 181538259 + 139503801 139509580 HERV9-int 5642 + 0 5642 3763 294 0 3 237 7 3 134 43 0 18 1 9 97 1 0 308 83 0 173 0 2 556 0 9 99 0 1 518 0 1 52 0 7 203 0 1 156 4 0 1174 0 1 1173 1 0 228 9 7 26 9 8 27 1 0 60 1 0 13 28 5 19 4 0 3 2 0 17 chain 57851 chr5 181538259 + 139511266 139512402 LTR12 884 + 0 884 27009 110 301 128 54 1 3 61 0 22 345 103 0 161 chain 17246 chr5 181538259 + 139515280 139515494 AluSp 311 + 0 209 59529 33 13 8 168 chain 34232 chr5 181538259 + 139525872 139526346 LTR2B 499 + 9 499 38541 5 1 0 60 3 0 37 0 20 114 0 1 4 6 0 7 1 0 4 0 6 37 7 8 5 1 0 182 chain 44936 chr5 181538259 + 139527816 139528336 Harlequin-int 5206 + 1719 2254 31611 10 0 9 222 1 7 287 chain 32325 chr5 181538259 + 139531093 139531564 LTR2B 499 + 9 499 40097 5 1 0 60 14 11 26 7 26 108 0 1 4 5 4 50 7 8 5 1 0 131 0 4 47 chain 19980 chr5 181538259 + 139549947 139550377 LTR12C 1709 + 671 981 56413 34 42 1 43 2 17 7 11 0 64 42 0 117 48 7 20 chain 3052 chr5 181538259 + 139550151 139550192 LTR12C 1709 + 837 878 80961 41 chain 27825 chr5 181538259 + 139718222 139718577 THE1A 353 + 0 353 45144 109 2 1 89 1 0 154 chain 128958 chr5 181538259 + 139718577 139721683 THE1A-int 1579 + 0 1573 14151 15 0 2 247 923 0 737 0 8 397 620 0 167 chain 23387 chr5 181538259 + 139721691 139722010 THE1A 353 + 2 320 51788 108 1 0 7 2 3 82 1 0 26 0 1 5 1 0 86 chain 60594 chr5 181538259 + 139977476 139978141 L1PA4 6152 + 4522 5187 26203 665 chain 4321 chr5 181538259 + 139986693 139986854 MER3 215 - 6 168 89346 23 0 1 10 95 95 33 chain 17063 chr5 181538259 + 140074161 140074363 AluSp 311 + 93 295 59739 202 chain 5434 chr5 181538259 + 140079604 140079667 LTR69 548 + 7 70 83531 63 chain 23670 chr5 181538259 + 140279742 140280024 AluSp 311 + 28 311 51328 11 0 1 271 chain 12934 chr5 181538259 + 140306100 140307159 MLT1C 463 + 7 455 65197 73 879 266 38 0 2 69 chain 522427 chr5 181538259 + 140451961 140457861 L1PA5 6144 + 3 6141 2160 88 0 217 558 0 2 547 0 5 925 1 0 34 0 4 206 1 0 575 1 0 6 2 0 80 0 2 889 0 1 202 0 4 504 1 0 121 0 5 319 0 4 840 chain 492563 chr5 181538259 + 140515451 140520931 L1PA3long 6157 + 0 6149 3357 94 0 526 86 7 0 73 1 129 657 0 2 138 1 6 1466 1 0 89 0 4 621 0 1 71 0 2 383 1 9 280 1 2 1369 1 0 98 0 1 42 chain 14058 chr5 181538259 + 140577326 140577575 MER2 342 + 6 260 63506 38 41 43 27 1 3 34 0 3 86 2 0 20 chain 11877 chr5 181538259 + 140606833 140606997 Tigger3b 1229 + 409 571 67060 15 6 5 97 1 0 45 chain 43938 chr5 181538259 + 140619241 140619806 LTR19B 566 + 0 566 32170 118 11 10 355 1 2 28 0 1 52 chain 78514 chr5 181538259 + 140621243 140622296 MER11C 1089 + 0 1073 21976 235 0 2 9 0 9 62 0 4 65 1 0 148 49 49 107 1 5 4 1 0 38 0 1 42 1 0 85 0 1 54 1 0 83 0 2 57 0 1 10 chain 42191 chr5 181538259 + 140623065 140623553 LTR15 485 + 0 485 33252 344 0 1 91 4 0 49 chain 10923 chr5 181538259 + 140638893 140639031 MER4B 649 + 493 632 68661 30 0 1 38 1 0 17 0 1 52 chain 9292 chr5 181538259 + 140681695 140681879 MLT1B 390 + 229 390 71928 29 59 36 96 chain 10887 chr5 181538259 + 140739440 140739660 L1PB1 5432 + 5225 5422 68716 11 1 0 45 1 0 15 25 12 19 22 17 26 1 0 21 1 0 13 1 0 18 chain 40874 chr5 181538259 + 140760257 140760726 L1PA5 6144 + 3941 4411 34045 241 0 1 228 chain 26943 chr5 181538259 + 140955278 140955650 THE1C 375 + 0 375 46350 109 14 15 51 0 1 5 5 6 188 chain 16187 chr5 181538259 + 140993715 140993958 Tigger3a 397 + 139 397 60767 9 0 10 42 1 3 122 25 28 44 chain 28092 chr5 181538259 + 141005434 141005731 AluYg6 310 + 13 310 44731 297 chain 34814 chr5 181538259 + 141024647 141025027 L1PA3long 6157 + 5777 6157 38145 380 chain 37898 chr5 181538259 + 141434333 141434772 MER9a2 513 + 0 439 36141 439 chain 8683 chr5 181538259 + 141544350 141544986 L1ME1 1623 + 808 1404 73251 5 1 0 10 10 11 26 367 336 12 1 0 83 93 85 28 chain 28411 chr5 181538259 + 141573154 141573456 AluYg6 310 + 0 302 44253 302 chain 6383 chr5 181538259 + 141733163 141733246 MLT1C 463 + 40 123 79736 83 chain 14457 chr5 181538259 + 141775698 141775922 MER1B 344 + 113 335 62954 13 7 12 125 25 18 54 chain 4086 chr5 181538259 + 141895244 141895377 MER31-int 1156 + 495 626 90874 30 53 47 11 7 11 32 chain 6757 chr5 181538259 + 141963240 141963327 MER53 195 + 2 91 78454 76 0 2 11 chain 20176 chr5 181538259 + 142037676 142038125 L1MB3 1562 + 1149 1555 56164 16 6 0 36 1 0 10 4 0 140 41 32 36 70 45 19 3 0 36 15 20 16 chain 198940 chr5 181538259 + 142042649 142044798 L1PA3long 6157 + 2784 4933 9747 2149 chain 3499 chr5 181538259 + 142049924 142050090 MER3 215 + 24 114 95252 14 38 30 34 68 0 12 chain 7061 chr5 181538259 + 142072294 142072403 MER34A1 583 + 0 110 77403 41 1 0 38 4 7 18 1 0 6 chain 7072 chr5 181538259 + 142100845 142100956 LTR48 738 + 401 507 77363 7 1 0 12 11 7 80 chain 22243 chr5 181538259 + 142247902 142248233 MER47A 366 + 7 330 53490 35 26 25 167 7 0 37 1 0 4 0 1 54 chain 10948 chr5 181538259 + 142348076 142349177 L1MA5 2750 + 2185 2661 68622 51 905 284 44 2 1 47 1 0 19 1 0 13 5 4 13 chain 39121 chr5 181538259 + 142503966 142504485 MLT2A2 560 + 0 560 35270 180 2 0 125 9 41 54 5 16 144 chain 39209 chr5 181538259 + 142648202 142648667 L1PA7 6471 + 6005 6470 35208 57 10 11 16 2 1 380 chain 38304 chr5 181538259 + 142683279 142684120 MER41C 542 + 0 522 35838 49 0 1 181 0 3 27 313 0 11 7 0 63 0 2 104 7 2 79 chain 40129 chr5 181538259 + 142711434 142712126 LTR66 600 + 0 576 34572 109 0 1 13 0 12 267 165 0 47 0 20 20 0 16 49 2 0 7 0 2 13 chain 5240 chr5 181538259 + 142711823 142711892 LTR66 600 + 331 401 84109 32 2 3 35 chain 7970 chr5 181538259 + 142750403 142750504 MER45A 178 + 51 152 74949 101 chain 104596 chr5 181538259 + 142994904 142996196 L1PA7 6471 + 5187 6465 17744 87 0 12 335 0 3 31 0 4 21 3 0 22 2 1 536 30 0 45 0 1 180 chain 42113 chr5 181538259 + 143000504 143001037 L1PA8 5853 + 5327 5847 33288 34 9 0 13 0 3 187 1 0 44 2 0 71 1 0 14 1 0 47 2 1 19 1 0 87 chain 19685 chr5 181538259 + 143035251 143035653 L1PB1 5432 + 5027 5398 56801 75 1 0 12 1 0 13 8 7 22 7 3 10 3 1 50 2 1 15 1 0 44 1 0 15 1 0 5 48 34 12 2 0 27 1 0 20 1 0 5 chain 50323 chr5 181538259 + 143103278 143103940 L1PA7 6471 + 5794 6461 29441 295 4 1 95 0 3 14 4 3 96 38 40 73 0 4 43 chain 16203 chr5 181538259 + 143118767 143118951 L1PA4 6152 + 5969 6152 60743 165 1 0 18 chain 151778 chr5 181538259 + 143202295 143204078 L1PA7 6471 + 4690 6470 12238 117 2 1 64 12 1 146 0 1 538 0 4 61 0 1 86 2 1 542 0 4 213 chain 17690 chr5 181538259 + 143293118 143293511 L1PB1 5432 + 5055 5422 59017 48 1 2 9 3 0 20 1 0 8 3 2 12 2 0 3 2 0 9 12 10 39 6 5 14 1 0 43 2 1 16 17 12 18 3 1 5 1 0 14 2 0 24 1 0 22 1 0 9 7 6 15 chain 10713 chr5 181538259 + 143325517 143325700 MER44B 551 + 273 458 69023 114 44 46 25 chain 23949 chr5 181538259 + 143331227 143331590 L1PA15 4387 + 3958 4310 50868 145 2 1 26 1 0 54 2 1 23 4 0 7 7 6 46 6 3 40 chain 14386 chr5 181538259 + 143373456 143373619 L1PA6 6164 + 5999 6162 63055 163 chain 11413 chr5 181538259 + 143420597 143420763 MER20 218 + 53 218 67886 24 21 20 121 chain 22095 chr5 181538259 + 143423975 143424221 L1PA3long 6157 + 5910 6156 53709 246 chain 19482 chr5 181538259 + 143431413 143431662 L1PA8 5853 + 5608 5853 57052 69 1 0 11 1 0 54 1 0 14 5 4 93 chain 168422 chr5 181538259 + 143608528 143610885 L1PB1 5432 + 3095 5424 11197 182 0 2 438 4 7 232 1 0 163 0 1 62 7 8 21 1 0 235 0 1 38 30 31 110 5 0 216 0 1 169 13 15 67 12 11 9 1 0 21 1 0 12 1 0 9 27 21 43 2 1 16 1 0 43 1 0 16 3 0 5 16 7 19 24 20 23 1 0 21 1 0 13 1 0 16 1 0 4 chain 62185 chr5 181538259 + 143627646 143628324 L1PA4 6152 + 5298 5977 25820 513 0 1 165 chain 123815 chr5 181538259 + 143686297 143687663 L1PA3long 6157 + 4788 6157 14877 894 0 2 164 0 1 308 chain 10226 chr5 181538259 + 143771989 143772100 L1PA2 6032 + 5921 6032 69953 111 chain 542839 chr5 181538259 + 143852080 143858214 L1PA4 6152 + 3 6151 1147 90 0 1 221 2 1 103 2 3 38 6 0 21 3 4 90 0 3 30 4 9 381 0 1 41 2 1 589 0 1 875 0 2 963 0 1 1166 0 5 731 6 7 770 chain 10209 chr5 181538259 + 143926208 143926326 HERVH-int 3825 + 3243 3361 69994 118 chain 18381 chr5 181538259 + 143942075 143942281 L1PA4 6152 + 5945 6151 58261 206 chain 12553 chr5 181538259 + 143974083 143974217 AluYb8 318 + 184 318 65898 134 chain 74218 chr5 181538259 + 144020820 144021866 MER11C 1089 + 0 1060 23028 247 0 9 16 15 23 18 0 4 68 1 0 148 55 45 62 1 0 50 11 14 33 0 1 127 0 1 54 1 0 117 0 1 22 chain 62917 chr5 181538259 + 144045146 144045929 LTR17 781 + 0 774 25653 299 10 0 26 14 15 43 4 0 303 0 4 84 chain 3520 chr5 181538259 + 144047411 144047459 L1MC1 2226 + 2006 2053 95099 40 1 0 7 chain 308840 chr5 181538259 + 144056060 144059995 L1PA8 5853 + 1528 5464 6643 153 0 1 337 7 0 33 1 2 93 0 14 320 0 4 384 4 2 12 3 0 25 1 0 17 0 7 64 0 1 386 7 8 155 0 1 284 1 2 130 1 4 38 0 1 4 1 0 328 5 0 284 0 1 64 0 1 150 4 0 162 2 0 5 0 1 4 19 8 120 1 0 326 chain 65786 chr5 181538259 + 144081061 144082026 MER11A 1151 + 9 1151 25006 45 1 100 46 1 0 30 1 0 64 0 11 209 0 1 5 0 1 161 6 9 11 16 17 26 0 4 41 12 13 13 0 2 16 3 61 96 10 9 82 10 9 60 chain 71657 chr5 181538259 + 144222492 144223297 L1PA5 6144 + 5334 6138 23620 557 1 0 247 chain 58952 chr5 181538259 + 144297583 144298319 LTR17 781 + 1 781 26680 30 0 4 291 0 1 12 4 10 22 0 10 28 4 5 301 0 22 44 chain 132620 chr5 181538259 + 144343903 144345362 L1PA3long 6157 + 4690 6155 13765 465 0 5 847 0 1 147 chain 6401 chr5 181538259 + 144420336 144420410 L1PA5 6144 + 6064 6138 79670 74 chain 104697 chr5 181538259 + 144446283 144447570 L1PA7 6471 + 5187 6470 17728 434 1 0 687 1 9 6 8 0 38 0 8 6 8 0 84 2 0 7 1 0 4 chain 62377 chr5 181538259 + 144500182 144500928 L1PA5 6144 + 5403 6141 25782 81 12 5 197 1 0 455 chain 79816 chr5 181538259 + 144517515 144518491 L1P1 4361 + 203 1172 21657 371 1 0 128 14 7 46 0 1 416 chain 145070 chr5 181538259 + 144533853 144535980 L1PA7 6471 + 4677 6461 12682 153 1 0 42 100 0 43 1 0 64 0 1 641 1 0 47 0 17 24 0 1 445 255 0 62 2 1 237 3 0 6 chain 190692 chr5 181538259 + 144558289 144560652 L1PA7 6471 + 2261 4643 10080 258 0 2 118 0 2 278 0 9 617 8 12 99 0 1 276 1 0 4 0 1 159 1 2 544 chain 15902 chr5 181538259 + 144632463 144632684 L1MA1 4479 + 231 456 61150 11 0 5 35 2 0 23 1 0 4 0 1 74 0 1 71 chain 9023 chr5 181538259 + 144679246 144679375 L1MA5A 2387 + 1438 1562 72512 113 3 0 5 2 0 6 chain 44164 chr5 181538259 + 144708950 144709528 LTR12_ 688 + 0 688 32042 35 1 0 107 0 1 152 1 2 36 15 124 231 chain 452680 chr5 181538259 + 144713179 144718081 L1PA2 6032 + 830 6032 4313 97 0 300 242 1 0 4246 0 1 316 chain 96307 chr5 181538259 + 144738334 144740129 L1PA8 5853 + 4384 5853 18737 75 0 1 129 1 0 421 2 0 17 8 8 33 464 144 94 0 1 257 2 1 45 2 0 72 25 22 36 2 1 19 2 1 53 0 3 36 chain 97084 chr5 181538259 + 144750512 144751616 L1PA5 6144 + 5038 6144 18651 634 0 2 470 chain 2984 chr5 181538259 + 144769419 144769451 MIRb 242 + 159 191 100013 32 chain 235302 chr5 181538259 + 144883765 144886386 L1PA3long 6157 + 3497 6152 8588 16 0 1 103 0 23 1337 0 1 326 0 3 491 0 5 204 0 1 144 chain 190061 chr5 181538259 + 144890913 144892979 L1PA2 6032 + 3959 6032 10109 1925 0 7 141 chain 21883 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177373 chr5 181538259 + 144987076 144989275 L1PA6 6164 + 3947 6154 10707 1096 0 1 5 1 0 42 4 10 212 1 2 46 0 1 792 chain 101423 chr5 181538259 + 144996302 144997417 L1PA3long 6157 + 3291 4406 18137 1115 chain 50200 chr5 181538259 + 145031038 145032015 MER4E1 777 + 0 770 29486 22 2 3 162 10 0 3 15 0 78 282 88 173 19 23 151 0 7 60 chain 129689 chr5 181538259 + 145042625 145044139 L1PA5 6144 + 4628 6144 14075 670 1 2 676 32 33 135 chain 3257 chr5 181538259 + 145088947 145088985 L1PA7 6471 + 5655 5693 97397 38 chain 60047 chr5 181538259 + 145088985 145089709 L1PA7 6471 + 5694 6417 26359 613 0 2 12 6 3 93 chain 3199 chr5 181538259 + 145089713 145089759 L1PA7 6471 + 6420 6464 97894 39 2 0 5 chain 34339 chr5 181538259 + 145093709 145094074 L1HS 6032 + 5667 6032 38464 365 chain 32836 chr5 181538259 + 145097895 145098286 L1PA7 6471 + 4076 4467 39640 391 chain 61276 chr5 181538259 + 145098286 145099024 L1PA7 6471 + 4468 5212 26041 75 0 3 118 0 4 537 1 0 7 chain 6384 chr5 181538259 + 145100083 145100168 MER47B 469 + 285 367 79735 7 3 0 75 chain 2912 chr5 181538259 + 145129602 145129634 MER3 215 + 127 159 100737 32 chain 325460 chr5 181538259 + 145149736 145153261 L1PA2 6032 + 2500 6032 6298 1263 1 2 1930 0 1 314 0 5 17 chain 69899 chr5 181538259 + 145265240 145266139 L1PB1 5432 + 3738 4640 24016 422 0 8 297 13 10 154 3 1 10 chain 69370 chr5 181538259 + 145289973 145290760 L1PA5 6144 + 5357 6144 24148 787 chain 104481 chr5 181538259 + 145297326 145298464 L1PA3long 6157 + 3853 4990 17760 202 1 0 935 chain 43743 chr5 181538259 + 145336637 145337120 L1PA3long 6157 + 5672 6155 32293 483 chain 55811 chr5 181538259 + 145414964 145425265 L1PA11 4918 + 1640 4517 27625 83 11 14 70 6 7 32 19 28 31 1319 0 210 0 6 62 7943 1818 242 0 4 87 0 3 53 5 4 80 2 0 14 1 0 20 2 0 9 chain 30691 chr5 181538259 + 145416202 145416535 L1PA3long 6157 + 4931 5264 40792 333 chain 11383 chr5 181538259 + 145448515 145448641 L1P1 4361 + 2312 2438 67943 126 chain 45547 chr5 181538259 + 145486762 145487253 L1PA2 6032 + 5540 6031 31285 491 chain 19859 chr5 181538259 + 145501390 145501746 THE1B 368 + 0 368 56598 111 0 3 6 2 0 10 6 7 40 56 63 66 7 6 23 0 4 29 chain 15947 chr5 181538259 + 145505651 145505957 L1MB1 2102 + 1749 2053 61096 5 1 0 86 23 24 11 1 0 46 0 4 17 2 0 21 12 13 31 18 14 32 chain 475583 chr5 181538259 + 145512155 145518135 L1PA7 6471 + 0 6454 3735 178 80 539 22 0 1 112 6 16 121 1 2 373 1 2 4 1 0 345 0 1 121 0 1 64 8 0 618 0 4 108 6 0 184 0 1 266 14 4 21 1 3 325 0 1 99 5 12 163 0 6 112 0 1 154 0 1 13 11 12 658 0 4 685 0 1 264 4 0 70 7 8 123 0 3 8 5 1 619 chain 166798 chr5 181538259 + 145582592 145584773 L1PA11 4918 + 2312 4501 11287 12 5 8 301 4 5 20 0 5 45 9 8 346 6 7 280 0 1 141 0 1 149 6 7 532 0 5 143 5 0 60 9 8 76 2 0 15 2 1 13 chain 535428 chr5 181538259 + 145650781 145656911 L1PA5 6144 + 3 6143 1597 725 0 1 158 0 1 113 0 1 430 0 1 137 0 3 800 0 1 248 3 4 346 1 2 543 1 2 1655 1 0 969 chain 16489 chr5 181538259 + 145715944 145716169 MER30 238 + 0 238 60395 108 5 21 60 3 0 49 chain 38047 chr5 181538259 + 145730631 145731133 LTR19A 502 + 0 502 36036 59 4 0 242 1 0 159 6 7 21 0 4 10 chain 5978 chr5 181538259 + 145734286 145734394 MLT1D 503 + 375 488 81168 34 23 28 51 chain 480853 chr5 181538259 + 145743489 145750076 L1PA8A 6298 + 34 6291 3610 6 1 0 16 1 0 11 24 13 19 36 30 18 2 1 9 2 1 18 1 0 13 3 1 13 8 5 12 26 22 15 5 0 9 2 0 5 8 0 37 1 0 9 19 11 80 2 0 14 1 0 10 5 3 32 0 1 38 6 5 221 31 1 32 0 1 189 0 1 137 0 4 125 13 13 264 0 1 308 0 1 33 0 1 197 306 0 52 0 1 415 29 15 111 2 0 368 0 1 362 6 1 25 10 8 18 1 10 18 1 6 342 8 26 52 0 1 395 0 1 162 1 2 16 0 1 25 0 28 37 0 4 796 0 5 145 0 3 43 0 2 34 0 1 636 1 0 83 chain 51936 chr5 181538259 + 145798427 145799026 L1PA6 6164 + 5559 6158 28892 599 chain 17464 chr5 181538259 + 145834188 145834613 LTR23 429 + 0 424 59281 4 1 0 23 21 16 44 43 39 137 15 16 16 76 83 36 0 1 9 chain 475748 chr5 181538259 + 145877592 145883179 L1PA6 6164 + 0 6162 3729 168 0 542 365 5 6 780 0 3 62 0 1 392 13 6 417 0 6 43 0 3 391 2 0 4 0 1 253 4 17 184 0 4 717 0 4 238 0 7 923 4 3 622 chain 534152 chr5 181538259 + 145891147 145897239 L1PA4 6152 + 0 6103 1654 581 0 3 6 3 0 806 2 3 1771 0 1 506 7 5 234 1 2 433 0 4 961 1 0 4 0 1 153 1 0 532 0 7 90 chain 5962 chr5 181538259 + 146004826 146004902 L1MB2 1706 + 1617 1692 81222 4 1 0 71 chain 13644 chr5 181538259 + 146117904 146118140 L1MA6 2487 + 2076 2285 64100 114 2 0 3 7 0 32 23 7 45 2 0 8 chain 43594 chr5 181538259 + 146121420 146121968 L1PA7 6471 + 5904 6452 32386 404 20 20 124 chain 4023 chr5 181538259 + 146125855 146125906 MER20 218 + 29 80 91289 51 chain 42784 chr5 181538259 + 146320431 146321032 Tigger1 2417 + 595 1226 32897 236 28 50 44 4 8 141 5 9 143 chain 2892 chr5 181538259 + 146326914 146326949 MER45A 178 + 135 170 100918 35 chain 30938 chr5 181538259 + 146415004 146415347 L1PA4 6152 + 5804 6152 41183 337 0 5 6 chain 17795 chr5 181538259 + 146486564 146486788 L1MA5A 2387 + 310 534 58900 224 chain 5048 chr5 181538259 + 146529044 146529105 MER5A1 166 + 54 115 85426 61 chain 10614 chr5 181538259 + 146533703 146533848 L1PA8 5853 + 5704 5847 69202 34 8 7 15 2 1 86 chain 566790 chr5 181538259 + 146609485 146615513 L1HS 6032 + 6 6030 46 443 4 0 5581 chain 10616 chr5 181538259 + 146643533 146643725 L1PB1 5432 + 5246 5416 69194 34 1 0 16 3 0 6 16 6 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 12 chain 224053 chr5 181538259 + 146678119 146680555 L1PA3long 6157 + 3721 6157 8929 2436 chain 27952 chr5 181538259 + 146728573 146728929 THE1A 353 + 0 353 44944 107 4 3 166 2 0 77 chain 124204 chr5 181538259 + 146728929 146730474 THE1A-int 1579 + 0 1570 14813 15 0 2 456 6 16 58 0 1 132 6 7 78 12 11 417 0 14 91 2 0 272 chain 27804 chr5 181538259 + 146730483 146730836 THE1A 353 + 0 353 45176 26 0 1 83 1 0 243 chain 27719 chr5 181538259 + 146735960 146736331 THE1C 375 + 7 375 45292 80 0 1 96 18 15 151 1 0 25 chain 68073 chr5 181538259 + 146760833 146761627 L1PA3long 6157 + 5315 6157 24437 41 0 1 646 11 58 96 chain 9421 chr5 181538259 + 146819716 146820009 L1MA6 2487 + 2131 2402 71650 96 26 10 15 103 102 24 8 4 16 1 0 4 chain 33442 chr5 181538259 + 146841556 146841936 L1PA7 6471 + 6083 6464 39142 194 0 1 186 chain 27188 chr5 181538259 + 146844076 146844366 L1HS 6032 + 5742 6032 45987 290 chain 12378 chr5 181538259 + 146893661 146893879 L1PA8 5853 + 5638 5853 66182 37 34 33 32 2 1 16 5 4 92 chain 117914 chr5 181538259 + 146898340 146899633 L1PA3long 6157 + 4862 6156 15898 669 0 1 624 chain 10010 chr5 181538259 + 146954403 146954604 L1PB1 5432 + 5198 5380 70403 22 3 2 14 1 0 41 3 4 11 18 5 16 0 1 13 2 0 5 1 0 14 2 0 24 1 0 10 chain 50169 chr5 181538259 + 147000994 147001614 LTR12_ 688 + 0 665 29497 60 1 42 64 0 1 40 0 2 353 5 6 97 chain 51812 chr5 181538259 + 147007289 147007962 LTR12_ 688 + 0 688 28936 77 25 0 44 0 25 69 0 1 315 4 17 16 3 4 120 chain 2074 chr5 181538259 + 147007369 147007391 LTR12_ 688 + 121 143 105905 22 chain 177804 chr5 181538259 + 147012946 147014882 L1PA2 6032 + 4079 6016 10689 1776 0 2 155 1 0 4 chain 49070 chr5 181538259 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5424 5211 27 7 8 189 0 1 57 4 19 38 0 14 24 4 5 211 1 0 5 0 1 541 0 4 204 230 51 290 3 1 401 3 4 98 1 2 286 6 4 335 3 4 75 1 21 261 5 6 104 2 0 54 2 17 352 40 0 145 1 0 618 14 0 7 0 25 89 5 6 167 15 4 10 4 12 211 0 1 6 6 25 44 1 2 9 5 0 24 1 0 8 17 12 9 2 0 53 2 1 16 1 0 43 1 0 16 3 0 15 9 0 16 9 6 13 2 0 45 2 1 28 1 0 4 chain 167785 chr5 181538259 + 147420974 147423003 L1PA7 6471 + 4418 6461 11226 202 0 1 186 0 5 166 13 13 307 0 1 224 0 10 88 1 0 18 2 1 497 3 0 176 0 1 6 2 3 138 chain 40836 chr5 181538259 + 147443121 147443592 L1PA8A 6298 + 5805 6291 34072 119 0 16 251 1 0 100 chain 45862 chr5 181538259 + 147458070 147458629 MER41A 554 + 0 554 31125 59 7 0 233 0 1 99 2 1 70 0 2 89 chain 195378 chr5 181538259 + 147495257 147497410 L1PA4 6152 + 3998 6151 9868 2153 chain 7209 chr5 181538259 + 147500025 147500324 L1MC1 2226 + 1074 1382 76914 23 2 0 13 5 6 27 1 13 12 132 129 44 22 23 18 chain 14128 chr5 181538259 + 147551458 147551755 MSTA 426 + 67 413 63406 33 24 49 53 67 65 29 4 24 63 0 6 24 chain 38779 chr5 181538259 + 147696574 147697090 THE1C-int 1605 + 0 576 35510 12 4 3 95 2 57 270 8 15 74 1 0 50 chain 8118 chr5 181538259 + 147702242 147702407 L1PB1 5432 + 5242 5392 74590 39 1 0 15 1 0 4 2 0 11 10 0 11 6 0 7 11 17 24 1 0 22 chain 17672 chr5 181538259 + 147728775 147729086 MER41-int 2638 + 112 394 59042 55 39 24 22 4 1 18 2 0 16 1 0 7 4 0 40 11 7 92 chain 45832 chr5 181538259 + 147734091 147734661 L1PA7 6471 + 5646 6470 31138 182 12 265 186 0 2 40 1 0 149 chain 221458 chr5 181538259 + 147864662 147867324 HERVH-int 3825 + 946 3825 8991 212 5 6 65 15 0 456 4 31 700 12 1 498 0 2 203 8 218 372 0 3 112 chain 40636 chr5 181538259 + 147868587 147869038 LTR7 482 + 0 482 34196 264 0 31 187 chain 3830 chr5 181538259 + 147955560 147955604 MLT1D 503 + 47 91 92646 44 chain 53395 chr5 181538259 + 147960402 147960970 L1HS 6032 + 3595 4163 28430 568 chain 16188 chr5 181538259 + 147972063 147972268 MER75B 242 + 11 216 60765 41 13 13 151 chain 268991 chr5 181538259 + 148002739 148006327 MER61-int 3695 + 5 3695 7734 5 1 0 14 10 6 21 1 0 47 22 17 155 3 2 138 2 3 55 10 7 72 0 1 34 0 1 58 0 96 118 2 0 121 0 1 6 1 8 68 0 2 261 14 18 152 0 1 126 0 5 475 1 0 22 10 11 89 0 1 199 1 3 191 5 0 92 2 3 52 2 1 45 1 0 55 1 0 34 10 9 244 2 1 11 0 1 29 0 2 404 1 0 58 10 14 25 chain 205208 chr5 181538259 + 148022390 148024628 L1PA3long 6157 + 2437 4797 9527 2204 1 0 21 0 123 12 chain 64651 chr5 181538259 + 148047166 148047936 L1PA7 6471 + 5465 6234 25280 164 4 0 69 0 2 268 0 1 265 chain 42291 chr5 181538259 + 148047970 148048620 L1PA8 5853 + 5022 5849 33198 189 1 1 13 0 253 86 1 0 44 2 0 42 69 6 21 17 11 7 2 0 45 2 1 19 1 0 89 chain 10447 chr5 181538259 + 148110837 148110970 L1PA8 5853 + 5723 5853 69525 16 2 0 21 1 0 93 chain 49242 chr5 181538259 + 148143846 148144381 L1PA3long 6157 + 4816 5351 29851 535 chain 24236 chr5 181538259 + 148164633 148164985 THE1B 368 + 0 345 50442 15 3 1 24 0 5 123 20 15 19 2 0 88 3 0 55 chain 104405 chr5 181538259 + 148217989 148219283 L1PA7 6471 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152 1 0 9 0 1 204 14 12 23 3 1 14 13 11 32 13 9 89 30 27 10 2 0 6 1 0 53 0 1 30 1 0 110 1 0 11 5 1 36 4 2 12 32 33 26 chain 34664 chr5 181538259 + 148575798 148576360 L1PA14 3548 + 2340 2815 38241 195 2 1 64 87 0 89 1 0 9 0 1 77 4 5 34 chain 39005 chr5 181538259 + 148576375 148577056 L1PA14 3548 + 2832 3476 35355 88 1 0 18 3 1 13 3 1 27 6 5 15 2 0 5 2 0 105 2 0 5 5 3 13 2 0 6 1 0 84 1 0 79 1 0 4 1 2 26 14 9 24 0 2 9 5 3 14 1 0 5 1 0 16 1 0 16 11 7 18 6 0 10 1 0 11 chain 490529 chr5 181538259 + 148610283 148615688 L1PA3long 6157 + 620 6157 3408 148 8 136 2273 1 0 1719 0 1 408 1 2 177 0 1 665 0 2 5 chain 41083 chr5 181538259 + 148680093 148680660 MLT2A2 560 + 1 560 33913 146 29 7 40 7 10 202 0 11 143 chain 99402 chr5 181538259 + 148704278 148705980 L1PB1 5432 + 3853 5422 18362 139 3 0 385 5 3 131 17 21 60 3 10 24 5 0 136 11 12 23 29 27 136 3 5 12 3 2 58 25 25 32 10 11 9 105 0 24 1 0 8 18 13 9 2 0 50 2 1 17 1 0 49 1 0 10 25 14 14 12 9 14 2 0 24 1 0 21 1 0 13 1 0 18 chain 4157 chr5 181538259 + 148875456 148875500 Charlie1a 1436 + 105 149 90417 44 chain 26993 chr5 181538259 + 148877447 148877827 L1PA8 5853 + 5481 5853 46283 40 1 0 43 2 1 44 2 0 70 1 0 13 10 9 38 3 2 19 1 0 93 chain 105419 chr5 181538259 + 148895856 148897584 L1PB1 5432 + 3742 5422 17626 220 1 0 4 39 13 14 1 0 21 0 1 25 1 4 28 0 1 39 1 2 376 0 1 42 20 32 56 0 2 378 0 1 4 0 68 7 0 3 19 141 56 9 2 0 52 2 1 16 1 0 21 4 1 21 1 0 16 29 17 13 59 53 13 1 0 12 1 0 18 chain 555322 chr5 181538259 + 148942273 148948290 L1PA2 6032 + 12 6029 390 60 0 1 5195 1 0 761 chain 84479 chr5 181538259 + 148975458 148976395 L1PA4 6152 + 5213 6151 20716 890 0 1 47 chain 26657 chr5 181538259 + 149016648 149016943 AluY 311 + 5 301 46747 127 0 1 168 chain 32907 chr5 181538259 + 149073761 149074154 L1P3 4156 + 1236 1632 39581 17 0 3 376 chain 242409 chr5 181538259 + 149076438 149079142 L1PA4 6152 + 3261 5969 8413 2043 0 4 661 chain 126327 chr5 181538259 + 149090187 149091744 THE1A-int 1579 + 0 1579 14504 712 0 1 9 0 9 8 0 3 119 0 9 709 chain 128940 chr5 181538259 + 149097793 149099742 L1PB1 5432 + 3526 5422 14157 4 0 1 6 7 0 61 0 4 237 0 1 24 14 0 48 21 9 445 6 17 176 4 6 60 2 3 415 17 23 37 31 15 16 1 0 9 2 1 12 7 3 9 2 0 51 1 0 16 2 1 44 1 0 15 51 37 14 2 0 24 1 0 22 1 0 13 2 1 16 chain 63240 chr5 181538259 + 149107509 149108214 L1PA5 6144 + 5436 6141 25572 705 chain 7374 chr5 181538259 + 149112695 149112826 Tigger3 1187 + 476 594 76467 52 1 0 15 1 0 20 8 0 4 1 0 13 3 1 13 chain 108340 chr5 181538259 + 149122965 149124413 L1P2 5180 + 2 1511 17273 134 11 25 33 1 0 53 17 16 17 56 56 48 0 1 69 8 7 54 1 0 55 0 49 164 9 10 718 chain 38888 chr5 181538259 + 149187553 149188085 LTR10F 562 + 0 562 35440 115 1 29 74 10 13 25 7 0 10 5 11 285 chain 2867 chr5 181538259 + 149380297 149380330 MIRb 242 + 200 233 101081 33 chain 3563 chr5 181538259 + 149473458 149473499 5S 121 + 1 42 94722 41 chain 30543 chr5 181538259 + 149542066 149542522 MER1A 529 + 89 529 41529 4 1 0 76 5 8 271 41 23 58 chain 4627 chr5 181538259 + 149582590 149582652 L1MA4 2864 + 2749 2809 87659 16 3 1 43 chain 2706 chr5 181538259 + 149638938 149638975 LTR33A 529 + 110 143 102317 25 4 0 8 chain 102450 chr5 181538259 + 149787884 149789065 L1PA5 6144 + 4942 6120 18017 1049 7 0 8 0 7 41 3 0 73 chain 6469 chr5 181538259 + 149808904 149808992 L1MB3 1562 + 1468 1555 79450 56 1 0 31 chain 14751 chr5 181538259 + 149860537 149860752 MER30 238 + 0 228 62597 98 16 0 13 8 34 51 0 3 29 chain 33091 chr5 181538259 + 149887556 149888026 LTR46 455 + 0 455 39447 188 29 28 90 1 0 40 4 5 61 14 0 43 chain 3289 chr5 181538259 + 149938642 149938681 MER53 195 + 44 83 97118 39 chain 3670 chr5 181538259 + 150086917 150086958 MER21B 843 + 40 81 93832 41 chain 7310 chr5 181538259 + 150098413 150098495 HY3 101 + 9 91 76633 82 chain 36071 chr5 181538259 + 150109902 150110435 LTR10A 586 + 0 571 37357 160 0 3 30 4 44 4 1 0 40 10 11 48 8 5 142 24 22 62 chain 6687 chr5 181538259 + 150435789 150435873 MER33 330 + 146 230 78682 84 chain 10642 chr5 181538259 + 150480433 150480599 MER2 342 + 164 336 69143 104 28 34 34 chain 75376 chr5 181538259 + 150536985 150537938 MER11C 1089 + 0 1075 22751 55 0 91 118 0 3 52 1 18 186 0 1 62 12 13 177 0 9 290 chain 2958 chr5 181538259 + 150685968 150686002 L1ME2z 1083 + 466 500 100298 34 chain 12221 chr5 181538259 + 150687035 150687264 MER47A 366 + 13 318 66437 28 24 59 105 0 42 12 5 0 7 3 8 27 1 0 17 chain 15811 chr5 181538259 + 150703274 150703449 PRIMA4_LTR 623 + 0 175 61274 175 chain 116978 chr5 181538259 + 150739201 150740995 L1PB1 5432 + 3602 5381 16062 112 22 7 173 0 1 173 0 1 91 0 1 301 5 13 157 4 0 45 0 4 26 3 1 36 12 30 30 0 2 6 1 0 72 0 1 87 1 0 39 1 3 39 0 1 4 6 5 34 19 17 24 39 31 51 6 5 12 1 0 44 1 0 15 3 0 6 68 55 13 1 0 11 chain 553813 chr5 181538259 + 150742837 150748947 L1PA3long 6157 + 1 6157 495 472 2 1 7 0 28 466 0 11 2510 0 4 1810 0 4 843 chain 5996 chr5 181538259 + 150754993 150755161 L1MC3 1789 + 1180 1321 81093 28 84 57 56 chain 18708 chr5 181538259 + 150770672 150771009 MER4A1 472 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150964139 150970265 L1PA5 6144 + 3 6135 1253 673 0 3 2039 2 1 2572 0 4 840 chain 34699 chr5 181538259 + 150973364 150973749 L1P3 4156 + 2581 2967 38223 48 0 1 337 chain 19885 chr5 181538259 + 151057443 151057703 AluSc5 308 + 0 266 56556 50 0 1 32 8 14 160 1 0 9 chain 16028 chr5 181538259 + 151057735 151057957 MER2 342 + 88 314 60993 59 8 13 130 1 0 24 chain 6697 chr5 181538259 + 151161928 151162002 MER83 447 + 330 404 78652 74 chain 4855 chr5 181538259 + 151281293 151281365 Tigger4a 237 + 164 237 86398 12 6 0 8 0 7 46 chain 121581 chr5 181538259 + 151309005 151310543 LTR12C 1709 + 0 1709 15245 252 6 0 8 0 1 389 0 278 184 1 0 4 4 2 106 0 4 244 102 0 155 1 0 82 chain 3317 chr5 181538259 + 151310237 151310296 LTR12C 1709 + 1505 1564 80016 59 chain 29682 chr5 181538259 + 151358691 151359007 AluYb8 318 + 0 315 42389 132 1 0 183 chain 33004 chr5 181538259 + 151373990 151374415 MER48 407 + 0 407 39511 66 0 1 15 0 1 49 21 1 274 chain 3224 chr5 181538259 + 151579164 151579210 L1MA8 2339 + 2165 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63 1 4 125 chain 541712 chr5 181538259 + 151988907 151995040 L1PA4 6152 + 2 6151 1222 441 1 0 776 0 1 53 0 1 4 0 3 540 0 2 661 0 1 640 0 1 563 2 1 664 0 4 427 3 4 515 0 4 843 chain 3932 chr5 181538259 + 152057205 152057284 MER5A1 166 + 44 124 91891 26 18 19 35 chain 565118 chr5 181538259 + 152076868 152082869 L1HS 6032 + 31 6032 92 6001 chain 11857 chr5 181538259 + 152096677 152096805 L1HS 6032 + 5904 6032 67100 128 chain 26806 chr5 181538259 + 152102952 152103329 THE1C 375 + 0 375 46530 105 11 9 65 0 4 11 8 5 151 1 0 25 chain 555529 chr5 181538259 + 152207300 152213333 L1PA2 6032 + 0 6032 382 1121 1 0 4911 chain 64099 chr5 181538259 + 152240353 152241131 L1PA7 6471 + 5670 6469 25395 4 1 0 35 0 1 299 0 28 424 7 0 8 chain 3179 chr5 181538259 + 152288071 152288107 MER5A1 166 + 87 123 98116 36 chain 90583 chr5 181538259 + 152308671 152309664 L1PA3long 6157 + 4632 5625 19583 993 chain 76559 chr5 181538259 + 152358179 152359046 MER11D 897 + 0 890 22423 587 0 23 280 chain 108569 chr5 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153331322 L1PA2 6032 + 0 6021 1391 758 0 1 302 1 0 2014 1 16 1666 0 1 424 0 4 226 0 1 467 0 4 137 chain 5961 chr5 181538259 + 153353854 153353948 MER96B 391 - 72 164 81229 25 1 0 7 2 0 13 1 0 27 0 2 18 chain 4026 chr5 181538259 + 153363732 153363956 ERV3-16A3_LTR 481 + 0 241 91271 18 122 134 22 12 15 15 8 10 27 chain 5043 chr5 181538259 + 153369839 153369902 MER33 330 + 35 98 85453 63 chain 540383 chr5 181538259 + 153381391 153387536 L1PA4 6152 + 12 6151 1318 51 9 10 383 12 6 18 4 0 100 1 0 652 0 1 1155 1 0 550 6 7 568 1 3 2260 0 1 374 chain 3252 chr5 181538259 + 153397333 153397411 MER58A 224 + 0 77 97463 34 26 25 18 chain 3448 chr5 181538259 + 153403609 153403678 MER58A 224 + 3 72 95673 14 18 0 7 0 18 30 chain 4374 chr5 181538259 + 153423714 153423770 L1MA4 2864 + 2755 2809 89031 11 2 0 43 chain 3155 chr5 181538259 + 153508223 153508397 MER3 215 + 12 88 98312 13 15 14 25 0 1 11 98 0 12 chain 13956 chr5 181538259 + 153547089 153547288 MER30 238 + 26 238 63659 80 6 22 71 3 0 39 chain 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138 0 1 70 0 1 125 1 0 147 0 6 71 10 13 195 0 2 40 1 0 210 14 0 78 1 3 37 0 1 17 7 9 100 0 4 297 316 0 77 0 4 166 0 1 66 0 11 51 2 3 6 0 1 26 0 3 53 0 11 16 15 14 153 1 0 82 0 5 233 2 1 21 1 0 88 0 4 329 0 1 46 2 0 160 0 5 46 4 0 16 0 5 21 7 22 144 0 7 121 0 1 396 0 1 34 chain 294128 chr5 181538259 + 154019854 154023292 L1PA6 6164 + 2703 6158 6993 47 0 5 254 7 5 254 0 5 33 1 0 1427 4 8 274 3 12 1125 3 0 6 chain 9497 chr5 181538259 + 154069458 154069575 L1MA3 4352 + 3950 4067 71481 117 chain 8805 chr5 181538259 + 154091938 154092207 MLT1D 503 + 27 319 72981 81 0 5 25 143 161 20 chain 515809 chr5 181538259 + 154121834 154128975 L1PA7 6471 + 1 6461 2479 248 10 14 149 31 4 574 0 1 257 0 6 3 6 0 501 1 0 18 0 1 131 1 0 127 1 0 605 0 1 701 1 2 277 8 9 331 9 0 8 0 2 22 423 73 508 1 0 4 0 1 120 3 2 84 0 1 827 9 8 140 465 161 9 0 1 154 2 0 151 0 4 69 1 0 151 chain 24644 chr5 181538259 + 154227872 154228244 MSTA 426 + 29 417 49805 84 1 19 27 7 11 35 31 25 187 chain 3064 chr5 181538259 + 154301134 154301247 Charlie4a 502 + 25 136 99186 14 1 0 24 57 56 17 chain 7028 chr5 181538259 + 154325987 154326075 L1MB7 1623 + 0 88 77506 88 chain 56275 chr5 181538259 + 154441477 154442196 MER4A 717 + 0 715 27493 361 0 4 29 19 7 279 0 4 31 chain 6003 chr5 181538259 + 154507653 154507735 LTR7C 471 + 367 449 81064 5 0 1 4 1 0 72 chain 4031 chr5 181538259 + 154515677 154515722 MER20 218 + 39 84 91231 45 chain 13742 chr5 181538259 + 154528726 154528884 L1PA5 6144 + 5985 6143 63958 158 chain 189083 chr5 181538259 + 154615852 154617926 L1PA3long 6157 + 4083 6157 10159 2074 chain 4215 chr5 181538259 + 154620817 154620985 MLT1K 546 + 347 512 90034 24 1 0 12 80 76 16 5 7 30 chain 4746 chr5 181538259 + 154635627 154635733 MER3 215 + 48 172 86978 15 2 9 36 10 11 11 7 17 25 chain 2641 chr5 181538259 + 154648124 154648194 Charlie18a 321 + 125 197 102783 12 21 25 16 2 0 19 chain 24049 chr5 181538259 + 154705134 154706013 L1PA15 4387 + 3848 4298 50729 42 4 2 40 0 2 70 449 0 101 1 0 25 63 87 39 17 14 28 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51 2 1 19 2 1 92 chain 19180 chr5 181538259 + 157916494 157917512 MSTD 398 + 5 398 57369 63 30 29 51 387 73 99 320 10 68 chain 5379 chr5 181538259 + 157917538 157917600 MER31B 477 + 202 264 83805 62 chain 23810 chr5 181538259 + 157922412 157922713 AluSq10 312 + 0 300 51087 172 12 11 117 chain 20938 chr5 181538259 + 157929517 157929821 AluYa5 310 + 10 308 55211 54 57 54 185 3 0 5 chain 35108 chr5 181538259 + 157945253 157945704 LTR7 482 + 0 482 37949 115 0 51 14 51 0 50 0 31 221 chain 8121 chr5 181538259 + 157959215 157959419 MLT1D 503 + 297 503 74586 30 0 1 27 89 90 58 chain 63920 chr5 181538259 + 157966990 157967775 LTR17 781 + 0 781 25427 31 0 4 271 11 0 21 0 1 60 14 15 370 0 1 7 chain 25049 chr5 181538259 + 157968730 157969111 LTR7 482 + 0 476 49191 22 1 2 77 15 14 14 1 52 30 8 50 46 0 1 57 1 2 109 chain 35504 chr5 181538259 + 158004245 158004626 L1PA2 6032 + 5650 6031 37720 381 chain 7861 chr5 181538259 + 158044323 158044503 L1PB1 5432 + 5207 5370 75222 13 2 1 16 1 0 43 1 0 16 1 0 6 16 6 11 14 13 14 2 0 24 chain 25559 chr5 181538259 + 158044514 158044863 THE1C 375 + 0 347 48389 118 0 1 55 27 24 149 chain 13489 chr5 181538259 + 158114348 158114528 THE1D 372 + 191 372 64328 19 13 14 148 chain 415138 chr5 181538259 + 158183158 158187733 L1PA3long 6157 + 1574 6153 4956 4249 0 1 161 0 2 11 1 2 153 chain 2826 chr5 181538259 + 158209115 158209151 MIR3 191 + 70 108 101427 26 0 2 10 chain 72399 chr5 181538259 + 158229314 158230108 L1PA3long 6157 + 3806 4600 23452 794 chain 140671 chr5 181538259 + 158230108 158231656 L1PA3long 6157 + 4601 6149 13046 1548 chain 51993 chr5 181538259 + 158258294 158258865 L1PA3long 6157 + 3982 4553 28876 571 chain 143757 chr5 181538259 + 158258867 158260453 L1PA3long 6157 + 4553 6146 12787 1459 0 7 127 chain 20766 chr5 181538259 + 158432711 158432963 AluSp 311 + 22 273 55409 4 0 1 98 1 0 7 1 0 141 chain 10404 chr5 181538259 + 158526931 158527055 MSTC 436 + 8 132 69604 124 chain 170747 chr5 181538259 + 158581760 158583984 SVA_D 2077 + 0 2065 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160892748 160899108 L1PA7 6471 + 0 6424 2760 490 0 1 331 0 3 128 0 1 148 0 1 282 3 1 76 10 5 424 0 1 143 1 0 455 0 1 148 2 4 50 0 1 7 4 7 157 0 1 305 0 1 6 0 1 301 9 6 11 7 0 52 0 4 12 5 14 321 4 2 11 0 1 79 0 5 8 7 5 559 9 10 138 0 2 16 5 6 207 1 0 381 2 3 22 26 66 176 0 2 22 0 3 625 0 1 13 0 1 56 1 0 104 chain 43303 chr5 181538259 + 160979952 160980497 MER41A 554 + 0 554 32567 373 0 6 114 4 7 54 chain 42770 chr5 181538259 + 160983676 160984217 MER41A 554 + 0 547 32902 288 0 1 180 10 15 63 chain 29960 chr5 181538259 + 160990222 160990602 MLT2A1 477 + 2 382 42092 167 4 1 9 0 1 24 0 1 28 0 1 148 chain 442771 chr5 181538259 + 160990659 160998884 HERVL-int 5654 + 0 5654 4522 181 0 1 157 0 1 85 0 5 221 22 5 24 4 1 5 0 3 181 0 5 353 0 21 168 0 1 134 3 0 5 7 10 92 15 17 66 11 12 87 0 3 40 15 28 44 0 6 29 1 0 125 0 1 14 0 1 341 10 11 164 0 2 800 0 3 1132 0 1 98 32 2 171 270 0 118 0 1 240 1 0 6 5 7 134 0 1 115 2325 0 100 0 1 74 chain 23765 chr5 181538259 + 160997646 160997927 L1PA7 6471 + 4957 5238 51171 281 chain 27812 chr5 181538259 + 160998884 160999263 MLT2A1 477 + 0 407 45166 169 4 1 9 0 1 24 0 1 91 12 40 47 0 2 18 1 0 4 chain 12607 chr5 181538259 + 161019005 161019213 MER44A 345 + 102 313 65788 74 25 29 24 0 4 5 4 0 15 1 0 60 chain 30331 chr5 181538259 + 161019216 161019861 MLT2A1 477 + 0 477 41729 42 6 8 12 1 0 76 0 1 29 10 18 5 3 0 192 12 0 11 0 1 18 181 18 27 1 0 19 chain 234367 chr5 181538259 + 161037205 161040056 L1PA7 6471 + 3612 6463 8628 559 0 2 64 0 1 483 0 2 13 5 6 379 0 1 458 12 1 41 0 2 235 0 3 436 1 0 165 chain 466327 chr5 181538259 + 161071359 161077360 L1PA6 6164 + 2 6150 3952 110 21 7 80 2 3 60 63 63 63 25 28 93 2 1 48 1 0 127 16 9 43 13 141 61 0 25 74 44 47 8 3 0 61 141 153 1025 1 2 812 0 1 51 0 1 187 1 0 550 0 1 873 8 13 5 5 0 309 3 0 623 0 1 389 chain 6219 chr5 181538259 + 161080946 161081076 MER1B 344 + 216 339 80273 12 0 3 32 40 30 46 chain 28531 chr5 181538259 + 161089229 161089669 L1PA16 3655 + 3151 3587 44071 46 6 10 79 6 4 37 0 2 86 22 16 69 5 6 73 3 0 8 chain 14054 chr5 181538259 + 161142063 161142367 L1PA13 3608 + 413 708 63514 15 1 0 17 0 3 3 5 0 8 25 25 12 1 0 4 2 1 15 2 0 17 1 0 13 0 1 56 8 8 20 2 0 25 16 16 36 chain 26707 chr5 181538259 + 161143123 161143515 THE1A-int 1579 + 1138 1562 46676 142 30 38 24 12 36 184 chain 28989 chr5 181538259 + 161216121 161216427 AluYa5 310 + 0 305 43348 132 1 0 173 chain 287299 chr5 181538259 + 161240387 161244007 HERVH-int 3825 + 10 3824 7218 322 1 0 203 1 0 10 3 73 11 25 22 5 1 0 5 0 1 15 42 0 21 44 0 58 0 1 21 2 1 193 0 1 595 0 2 584 1 0 129 0 1 575 1 0 227 0 3 31 8 218 486 chain 22568 chr5 181538259 + 161248408 161248812 LTR7 482 + 2 475 53020 67 8 46 67 53 0 10 0 57 5 2 0 11 1 32 16 1 0 41 5 4 117 chain 305708 chr5 181538259 + 161248821 161252739 HERVH-int 3825 + 0 3825 6703 333 1 0 137 15 16 4 1 0 45 1 0 10 0 71 15 3 0 14 12 11 33 9 8 23 143 0 9 2 1 49 0 1 372 21 0 489 0 1 794 0 1 834 2 0 30 0 1 106 26 27 126 1 0 4 1 2 160 6 11 87 chain 29154 chr5 181538259 + 161254606 161255013 LTR7 482 + 0 476 43112 68 9 47 109 3 4 36 0 31 159 2 1 21 chain 51346 chr5 181538259 + 161344537 161345209 L1PA7 6471 + 5802 6466 29099 170 1 2 101 1 0 63 0 1 158 1 2 5 1 0 11 0 1 143 10 0 7 chain 71323 chr5 181538259 + 161362041 161363534 L1PA7 6471 + 4983 6466 23689 405 11 0 226 2 4 83 3 2 763 chain 42671 chr5 181538259 + 161498585 161499217 LTR14B 630 + 8 630 32959 83 1 2 4 1 0 76 0 1 120 0 25 72 0 9 11 52 14 16 8 0 51 0 1 137 chain 272063 chr5 181538259 + 161594569 161597631 L1PA5 6144 + 3006 6077 7654 120 0 1 1989 0 7 723 0 1 230 chain 19861 chr5 181538259 + 161623662 161623918 L1PA7 6471 + 6207 6465 56595 99 11 13 146 chain 24518 chr5 181538259 + 161640119 161640439 THE1C-int 1605 + 1272 1592 50001 21 1 2 4 1 0 37 1 0 155 0 1 100 chain 73725 chr5 181538259 + 161654289 161655223 L1PA10 4194 + 3219 4149 23159 321 1 0 565 0 2 5 2 0 5 3 0 32 chain 40193 chr5 181538259 + 161667925 161668358 L1PA3long 6157 + 5724 6157 34523 433 chain 75991 chr5 181538259 + 161710812 161712798 L1PA3long 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181538259 + 162174265 162174318 L1PA6 6164 + 6106 6159 85722 53 chain 21000 chr5 181538259 + 162181405 162181652 L1PA5 6144 + 5898 6141 55123 232 4 0 11 chain 14563 chr5 181538259 + 162233677 162233851 THE1B-int 1605 + 1426 1600 62833 174 chain 18878 chr5 181538259 + 162252444 162252692 L1PA8 5853 + 5608 5853 57670 70 2 1 61 2 1 21 1 0 91 chain 3507 chr5 181538259 + 162269128 162269166 LTR12_ 688 + 456 494 95187 38 chain 220000 chr5 181538259 + 162304170 162307249 L1PA6 6164 + 3000 6076 9040 184 2 1 6 6 0 49 55 59 104 2 1 126 1 0 335 0 18 27 1 0 148 0 1 170 8 9 130 0 4 197 21 22 260 11 12 29 0 1 163 0 3 263 0 1 10 3 4 41 0 1 101 7 9 216 13 0 13 80 2 131 6 65 160 chain 212667 chr5 181538259 + 162328032 162331063 L1PA10 4194 + 254 4161 9240 18 2 0 14 46 20 29 3 1 20 1 0 7 1 0 11 1 0 6 5 0 15 7 0 8 2 1 80 1 0 4 3 2 189 1 4 340 5 6 45 11 13 73 1 0 23 4 5 99 5 0 6 14 19 163 0 11 280 11 22 281 2 1 154 17 20 351 0 3 31 0 1 4 0 2 107 4 5 258 0 1 26 0 892 21 2 0 159 15 12 33 1 0 11 chain 10114 chr5 181538259 + 162365075 162365211 L1PA16 3655 + 2059 2254 70172 53 1 60 82 chain 89249 chr5 181538259 + 162370105 162371124 LTR5A 1029 + 0 1029 19815 116 0 3 28 1 0 132 0 1 371 0 3 192 0 4 179 chain 11127 chr5 181538259 + 162446356 162446480 L1PA5 6144 + 6008 6132 68364 124 chain 46923 chr5 181538259 + 162472476 162473109 LTR12 884 + 0 854 30691 25 1 0 228 0 91 32 2 0 188 1 0 113 13 147 30 chain 6715 chr5 181538259 + 162477916 162477993 U6 107 + 30 107 78588 77 chain 75532 chr5 181538259 + 162477993 162478874 L1P1 4361 + 3460 4341 22711 48 2 5 637 1 0 155 1 0 23 2 1 12 chain 37390 chr5 181538259 + 162542323 162542772 L1PA7 6471 + 6021 6467 36481 115 0 1 45 6 0 137 1 5 135 2 0 8 chain 40794 chr5 181538259 + 162548396 162548902 LTR12F 595 + 0 595 34100 102 1 2 40 2 0 5 0 90 356 chain 552473 chr5 181538259 + 162578038 162584183 L1PA3long 6157 + 4 6152 581 839 3 1 133 1 0 1640 0 1 942 0 1 1749 0 4 838 chain 30830 chr5 181538259 + 162622312 162622736 LTR12C 1709 + 769 1198 41284 68 1 0 234 0 47 60 41 0 20 chain 2924 chr5 181538259 + 162622675 162622708 LTR12C 1709 + 1053 1086 100649 33 chain 3721 chr5 181538259 + 162622747 162622847 LTR12C 1709 + 802 983 63661 24 54 135 22 chain 442786 chr5 181538259 + 162626041 162631935 L1PA8 5853 + 50 5853 4521 21 2 0 11 1 0 7 58 22 18 12 2 171 12 0 339 7 8 293 1 2 242 0 2 149 0 1 173 6 8 5 2 0 127 6 5 12 0 10 343 1 2 192 0 8 266 1 5 333 2 1 87 0 1 18 3 7 55 0 1 223 0 1 164 11 6 355 72 10 144 10 14 302 0 1 123 2 0 104 0 7 274 0 1 160 3 1 28 0 1 166 0 2 201 0 1 71 0 1 29 12 8 169 1 0 44 2 0 67 30 29 36 2 1 19 1 0 93 chain 3684 chr5 181538259 + 162629784 162629823 L1PA8 5853 - 2103 2142 93714 39 chain 35835 chr5 181538259 + 162707108 162707510 L1PA3long 6157 + 5633 6035 37507 402 chain 11358 chr5 181538259 + 162707511 162707633 L1PA3long 6157 + 6035 6157 67999 122 chain 64994 chr5 181538259 + 162712691 162713420 L1PA4 6152 + 4452 5182 25192 647 0 1 82 chain 5593 chr5 181538259 + 162718096 162718191 LTR19A 502 + 366 458 82838 6 1 0 58 11 9 19 chain 20934 chr5 181538259 + 162725904 162726170 L1P3 4156 + 3272 3540 55215 77 4 5 127 1 2 57 chain 10061 chr5 181538259 + 162732811 162733002 LTR8 732 + 23 527 70279 7 0 9 54 3 0 46 0 309 18 29 28 4 1 0 29 chain 408269 chr5 181538259 + 162733034 162737549 L1PA3long 6157 + 1634 6157 5042 692 1 0 1967 0 2 829 0 10 81 1 0 937 2 0 5 chain 19330 chr5 181538259 + 162804493 162804708 L1PA4 6152 + 5928 6143 57203 215 chain 85932 chr5 181538259 + 162809393 162810465 MER11B 1079 + 0 1063 20458 264 4 1 507 8 2 289 chain 459356 chr5 181538259 + 162845997 162851428 L1PA3long 6157 + 724 6147 4145 1021 0 1 1159 22 11 1611 0 1 1516 0 1 102 chain 108670 chr5 181538259 + 162856970 162858173 L1PA3long 6157 + 4953 6156 17221 1203 chain 7423 chr5 181538259 + 162883169 162883327 LTR12C 1709 + 720 877 76333 29 2 17 7 15 0 17 17 17 29 2 1 40 chain 87949 chr5 181538259 + 162973510 162974491 L1PA4 6152 + 3992 4984 20058 421 0 1 19 0 1 431 0 9 110 chain 6700 chr5 181538259 + 162991280 162991402 MER20 218 + 97 218 78637 62 27 26 33 chain 38479 chr5 181538259 + 163018376 163018864 L1PA8 5853 + 5372 5853 35732 192 1 0 44 2 0 70 2 1 11 1 0 50 2 1 18 2 1 93 chain 318799 chr5 181538259 + 163049104 163052963 L1PA7 6471 + 2570 6459 6427 52 14 10 42 0 2 826 1 0 27 5 3 17 0 4 10 0 1 85 0 1 259 0 1 550 0 1 179 0 2 21 0 19 116 0 4 147 1 0 203 0 2 465 1 4 509 1 0 19 1 0 308 chain 15732 chr5 181538259 + 163073370 163073751 L1PB1 5432 + 5084 5427 61370 19 1 2 9 5 0 20 1 0 12 1 0 10 17 11 53 18 16 38 10 9 13 14 1 30 8 5 14 2 0 24 1 0 22 1 0 9 6 5 13 2 0 8 chain 126123 chr5 181538259 + 163076914 163078524 L1PA8 5853 + 3402 5052 14534 383 1 0 73 11 17 500 9 10 473 0 5 87 12 43 17 2 0 42 chain 311896 chr5 181538259 + 163081339 163085595 L1PB1 5432 + 1250 5430 6573 147 1 0 6 14 0 468 9 8 618 1 2 97 1 0 14 16 16 91 0 4 104 0 1 61 1 4 108 0 1 15 0 1 231 4 1 133 0 2 349 1 0 224 1 0 156 1 0 115 6 7 16 9 0 235 43 44 99 2 0 418 0 1 5 1 0 51 57 11 24 1 0 7 2 1 12 4 0 9 2 0 53 2 1 16 1 0 40 7 6 13 3 0 6 16 6 19 20 39 4 1 0 21 1 0 13 1 0 16 2 0 6 1 0 4 chain 45945 chr5 181538259 + 163124960 163125473 MER9a1 513 + 0 513 31083 513 chain 31921 chr5 181538259 + 163131263 163131605 L1PA2 6032 + 5690 6032 40393 342 chain 523496 chr5 181538259 + 163146429 163153167 L1PA7 6471 + 3 6463 2110 63 8 9 295 1 0 35 6 0 12 1 2 701 1 2 645 0 1 733 0 2 7 0 1 128 2 0 625 2 1 8 0 1 229 1 0 505 0 1 403 1 3 109 1 5 31 2 5 789 2 1 30 1 8 209 0 4 18 1 4 170 2 0 350 302 5 298 0 1 11 chain 509726 chr5 181538259 + 163165063 163171200 L1PA6 6164 + 8 6161 2781 186 0 1 41 0 2 92 0 1 187 0 2 47 1 0 239 0 4 543 0 1 149 5 4 130 0 1 88 1 2 595 6 1 34 0 1 38 0 4 408 0 6 103 0 1 1007 0 1 340 1 0 4 1 2 135 8 0 141 0 1 98 0 1 441 0 6 200 0 1 18 2 0 839 2 0 7 chain 29114 chr5 181538259 + 163181946 163182300 L1PA8 5853 + 5501 5848 43167 63 1 0 45 2 0 70 1 0 9 1 0 52 2 1 19 1 0 88 chain 58828 chr5 181538259 + 163183792 163184439 L1PA3long 6157 + 5503 6150 26731 647 chain 10223 chr5 181538259 + 163202174 163202384 MER30 238 + 0 231 69963 32 0 22 10 53 59 7 4 0 60 3 0 41 chain 493271 chr5 181538259 + 163212189 163218112 L1PA6 6164 + 202 6151 3338 307 2 1 429 0 25 413 1 0 37 6 1 7 0 5 298 1 0 594 6 8 150 0 8 419 0 1 68 4 0 216 0 1 59 5 1 446 2 0 1385 0 1 858 0 1 210 chain 28743 chr5 181538259 + 163221142 163221450 AluYg6 310 + 0 306 43719 131 2 0 175 chain 7277 chr5 181538259 + 163237218 163237307 L1PA6 6164 + 1051 1139 76743 4 1 0 84 chain 71079 chr5 181538259 + 163237312 163238169 L1PA6 6164 + 1159 2019 23747 272 0 5 10 3 0 403 0 1 169 chain 147045 chr5 181538259 + 163238169 163239948 L1PA6 6164 + 2029 3804 12539 302 1 2 16 0 5 546 0 1 4 12 3 275 5 7 59 5 1 554 chain 58435 chr5 181538259 + 163242980 163243627 L1PA4 6152 + 5495 6144 26829 396 0 2 251 chain 8015 chr5 181538259 + 163254862 163254952 L1PA7 6471 + 6218 6308 74853 90 chain 12479 chr5 181538259 + 163254959 163255114 L1PA7 6471 + 6314 6466 66020 145 3 0 7 chain 50813 chr5 181538259 + 163280501 163281052 L1PA3long 6157 + 5606 6157 29274 551 chain 29393 chr5 181538259 + 163296522 163297305 L1PB3 3668 + 2923 3409 42746 65 2 0 16 4 0 87 308 5 51 55 69 72 8 7 95 1 0 19 chain 39219 chr5 181538259 + 163312124 163312711 MLT2A2 560 + 1 559 35202 141 0 1 40 1 0 13 79 38 168 0 11 76 0 1 69 chain 25458 chr5 181538259 + 163320628 163320916 AluYk4 311 + 10 298 48545 288 chain 208370 chr5 181538259 + 163334733 163337766 HERVH-int 3825 + 0 3168 9405 209 11 13 97 26 25 66 8 7 28 22 83 16 3 219 4 1 0 11 1 0 25 0 1 84 1 3 280 1 4 54 15 0 66 0 1 135 9 0 171 0 1 4 1 0 81 0 27 17 4 0 317 41 46 807 31 32 41 151 0 40 1 0 153 chain 96073 chr5 181538259 + 163355687 163356994 LTR12C 1709 + 0 1709 18768 205 24 36 97 10 53 73 8 9 177 0 278 182 1 0 7 3 1 89 24 0 17 11 4 62 0 1 122 0 102 103 8 7 84 chain 15928 chr5 181538259 + 163375677 163376032 THE1B 368 + 2 347 61120 68 14 0 38 44 45 24 23 16 7 1 0 10 0 4 10 8 16 66 17 16 25 chain 14356 chr5 181538259 + 163391653 163391808 L1PA7 6471 + 5175 5330 63101 155 chain 33132 chr5 181538259 + 163391810 163392215 L1PA7 6471 + 5333 5746 39417 290 2 0 38 0 7 16 0 3 59 chain 114783 chr5 181538259 + 163393827 163395574 L1PB1 5432 + 3727 5422 16417 235 0 1 588 19 20 57 14 11 41 0 3 30 0 1 83 8 9 231 9 10 34 1 2 15 44 16 24 8 6 12 2 0 3 2 0 7 9 7 63 1 0 44 1 0 16 2 0 9 2 1 6 9 0 14 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 76832 chr5 181538259 + 163418508 163419586 MER11B 1079 + 0 1074 22367 59 91 0 13 0 91 87 0 1 12 3 0 47 0 4 358 1 0 100 8 2 279 5 6 15 chain 168866 chr5 181538259 + 163425971 163428299 L1PB1 5432 + 3155 5424 11161 127 0 2 78 17 9 227 1 0 132 2 3 379 0 1 41 0 4 6 0 4 197 0 1 262 0 1 78 6 0 307 0 2 87 3 2 10 9 0 23 1 0 9 16 11 11 10 8 40 22 20 31 2 0 13 9 0 15 1 0 4 19 8 19 8 5 14 2 0 20 24 15 10 1 0 13 1 0 16 1 0 4 chain 63179 chr5 181538259 + 163684126 163684817 L1PA2 6032 + 5280 5973 25583 575 0 2 116 chain 160071 chr5 181538259 + 163780788 163782642 L1PA5 6144 + 157 1997 11751 316 7 6 403 0 1 149 0 1 207 19 4 753 chain 12806 chr5 181538259 + 163832527 163832749 MER30 238 + 31 238 65432 75 6 0 8 3 14 17 24 4 89 chain 97222 chr5 181538259 + 163842021 163843104 L1PA3long 6157 + 5051 6149 18632 88 0 7 160 0 8 835 chain 113191 chr5 181538259 + 163853719 163855090 L1PA7 6471 + 5070 6464 16654 22 1 0 262 1 0 22 9 28 15 0 2 199 3 2 466 0 6 222 1 0 148 chain 138736 chr5 181538259 + 163872501 163874113 L1PA6 6164 + 4548 6162 13209 159 1 0 4 1 2 243 0 1 355 0 4 310 0 1 529 4 0 6 chain 31161 chr5 181538259 + 163903374 163903717 L1PA4 6152 + 5683 6026 41013 343 chain 4496 chr5 181538259 + 163932060 163932180 Cheshire 1285 + 35 147 88357 38 54 46 28 chain 388070 chr5 181538259 + 163933214 163938344 L1PA8 5853 + 108 5847 5351 49 23 20 52 1 0 5 0 1 32 8 12 23 18 6 114 0 1 17 8 7 197 27 23 68 29 0 29 5 18 237 5 7 220 0 1 226 7 5 38 0 2 387 0 2 61 0 1 51 22 0 66 2 0 466 0 1 386 12 18 34 0 1 563 4 8 773 1 0 30 0 653 545 1 0 44 2 0 69 10 9 54 2 1 19 2 1 86 chain 8724 chr5 181538259 + 163940368 163940520 L1MA3 4352 + 4172 4311 73163 63 4 0 23 2 0 24 14 7 22 chain 12200 chr5 181538259 + 163956711 163956866 MLT1B 390 + 220 376 66473 98 0 1 57 chain 62864 chr5 181538259 + 163971388 163972097 L1PA4 6152 + 4465 5185 25664 337 0 10 299 0 1 73 chain 29035 chr5 181538259 + 163996661 163996977 AluYa5 310 + 0 310 43270 111 6 0 199 chain 137070 chr5 181538259 + 164121978 164123692 L1PA7 6471 + 3785 5499 13335 35 4 0 7 1 5 305 0 1 62 12 14 98 0 1 101 9 0 4 0 1 130 3 4 30 2 0 72 13 17 292 1 2 533 chain 29288 chr5 181538259 + 164177921 164178237 AluYa5 310 + 0 310 42911 111 6 0 199 chain 56202 chr5 181538259 + 164248704 164249328 L1PA3long 6157 + 5525 6150 27509 98 0 1 526 chain 21611 chr5 181538259 + 164254746 164255124 THE1D 372 + 0 372 54338 15 0 2 15 1 0 21 36 28 81 0 1 19 41 42 80 1 0 68 chain 5296 chr5 181538259 + 164281997 164282221 L1ME1 1623 + 1054 1280 84212 25 3 0 9 3 2 26 118 121 13 0 3 27 chain 9966 chr5 181538259 + 164306505 164306834 MLT1B 390 + 55 390 70491 60 137 123 18 0 20 23 30 31 27 3 2 31 chain 57438 chr5 181538259 + 164510459 164511136 L1PA7 6471 + 5783 6461 27121 284 0 1 393 chain 25723 chr5 181538259 + 164526782 164527067 L1PA4 6152 + 5862 6152 48135 279 0 5 6 chain 185665 chr5 181538259 + 164536793 164538877 L1PA4 6152 + 3434 5515 10315 1201 1 0 25 1 0 545 4 0 194 0 3 113 chain 70960 chr5 181538259 + 164544074 164544925 MER11D 897 + 0 890 23766 478 0 12 12 1 3 28 1 2 41 1 24 246 0 1 43 chain 28816 chr5 181538259 + 164607829 164608177 L1PB1 5432 + 3828 4176 43604 128 1 0 54 0 1 165 chain 237405 chr5 181538259 + 164827687 164830631 HERVL-int 5654 + 0 5654 8539 296 0 5 734 0 1 421 42 19 320 11 12 97 6 2728 120 0 1 597 0 2 140 1 2 159 chain 28928 chr5 181538259 + 164830638 164831132 MLT2A1 477 + 7 477 43438 36 15 9 117 4 1 19 1 0 6 28 1 46 1 2 127 42 54 52 chain 18940 chr5 181538259 + 165007692 165008028 THE1D 372 + 0 332 57606 7 0 1 42 9 0 24 3 0 5 14 18 14 3 5 55 27 29 25 1 0 107 chain 18844 chr5 181538259 + 165026343 165026641 L1PA16 3655 + 3291 3584 57723 59 45 43 184 3 0 7 chain 3835 chr5 181538259 + 165171778 165171828 MER46C 351 + 274 324 92601 50 chain 27342 chr5 181538259 + 165234255 165234610 THE1B 368 + 0 368 45776 44 5 20 110 1 0 119 1 0 75 chain 28684 chr5 181538259 + 165336501 165336806 AluYa5 310 + 0 304 43826 132 1 0 172 chain 450470 chr5 181538259 + 165413346 165418510 L1PA4 6152 + 796 5976 4383 440 0 1 1761 0 1 167 3 1 379 5 0 790 7 15 953 10 14 48 2 0 417 0 11 182 chain 236191 chr5 181538259 + 165464181 165468021 L1PBa1 4058 + 0 3212 8562 10 2 0 20 16 6 11 72 68 160 0 1 173 2 0 114 1 24 33 8 7 31 4 1 251 1 0 751 1 0 36 311 0 105 0 3 108 1 2 207 0 1 114 320 0 214 0 1 11 13 8 153 30 31 93 3 0 5 0 3 127 0 1 328 chain 94158 chr5 181538259 + 165468570 165470079 L1PB 1623 + 117 1585 19022 67 13 10 29 27 29 17 4 3 133 18 10 72 1 0 512 3 9 231 6 9 56 2 0 32 2 3 38 0 1 68 144 107 22 2 0 10 chain 22499 chr5 181538259 + 165581442 165581742 THE1A 353 + 1 298 53122 12 2 0 34 0 1 48 2 1 190 1 0 11 chain 20519 chr5 181538259 + 165812719 165812987 AluSc8 310 + 40 309 55758 84 4 7 154 2 0 24 chain 31073 chr5 181538259 + 165878769 165879136 L1PA7 6471 + 5350 5721 41068 270 0 4 97 chain 59013 chr5 181538259 + 165919339 165920021 SVA_B 1603 + 885 1603 26660 41 17 13 11 0 1 4 0 39 609 chain 90593 chr5 181538259 + 165929809 165930886 L1PA6 6164 + 5074 6154 19579 244 0 4 274 5 6 171 0 1 125 3 0 255 chain 10024 chr5 181538259 + 165951138 165951312 MER30B 195 + 8 195 70369 28 0 1 37 33 41 39 0 3 7 0 1 30 chain 3695 chr5 181538259 + 166118893 166118935 MADE1 96 + 53 95 93641 42 chain 143163 chr5 181538259 + 166145691 166147235 L1PA2 6032 + 4487 6031 12845 1544 chain 69930 chr5 181538259 + 166254072 166254981 L1PA8 5853 + 4785 5689 24010 225 2 0 34 30 30 13 0 1 78 1 0 354 0 1 43 1 0 44 2 0 70 2 1 10 chain 82447 chr5 181538259 + 166420676 166421558 L1HS 6032 + 5150 6032 21143 882 chain 4644 chr5 181538259 + 166682812 166683055 MER20 218 + 0 209 87562 18 31 24 39 132 105 23 chain 5398 chr5 181538259 + 166749842 166749923 MER53 195 + 112 195 83709 54 1 3 26 chain 18698 chr5 181538259 + 166848471 166848702 L1PA8A 6298 + 6045 6278 57901 137 0 2 94 chain 4220 chr5 181538259 + 166863219 166863298 MADE1 96 - 0 96 90004 31 13 30 35 chain 2858 chr5 181538259 + 166903427 166903520 MER20 218 + 61 160 101161 20 31 36 13 8 9 21 chain 26604 chr5 181538259 + 167288280 167288587 AluY 311 + 3 311 46824 129 0 1 178 chain 7562 chr5 181538259 + 167426385 167426475 LTR19B 566 + 476 566 75955 90 chain 121767 chr5 181538259 + 167435585 167437590 THE1B-int 1605 + 0 1600 15216 363 433 0 65 12 39 208 0 1 4 0 2 102 4 0 172 3 4 176 0 2 355 1 0 107 chain 18720 chr5 181538259 + 167452717 167452927 L1PA5 6144 + 5920 6130 57877 210 chain 8813 chr5 181538259 + 167534421 167534580 MER53 195 + 9 193 72970 58 35 60 66 chain 24870 chr5 181538259 + 167562694 167562987 AluSq 315 + 20 315 49491 112 1 3 180 chain 41531 chr5 181538259 + 167637441 167637978 L1PA8 5853 + 5314 5853 33660 27 0 1 178 0 1 43 4 9 35 2 0 74 9 8 53 1 0 22 2 1 87 chain 130875 chr5 181538259 + 167858873 167861062 SVA_F 1814 + 335 1814 13941 144 0 40 362 127 0 17 177 0 49 0 15 225 461 0 627 chain 7204 chr5 181538259 + 167859382 167859475 SVA_F 1814 + 997 1090 46647 93 chain 15799 chr5 181538259 + 167859525 167859700 SVA_F 1814 + 899 1089 38615 49 3 18 123 chain 3242 chr5 181538259 + 167860001 167860076 SVA_F 1814 + 1039 1138 72381 4 12 38 47 2 0 10 chain 5058 chr5 181538259 + 167860077 167860155 SVA_F 1814 + 1011 1089 49886 78 chain 24969 chr5 181538259 + 167860155 167860434 SVA_F 1814 + 898 1187 49329 49 0 15 39 2 0 4 1 0 172 2 0 10 chain 28724 chr5 181538259 + 167969146 167969519 THE1B 368 + 0 368 43752 81 4 1 90 1 0 136 1 0 60 chain 61723 chr5 181538259 + 168100169 168100934 L1PA7 6471 + 5746 6470 25936 269 1 0 371 51 11 73 chain 6256 chr5 181538259 + 168166692 168166799 MER105 203 + 46 152 80153 60 16 15 31 chain 5457 chr5 181538259 + 168183316 168183389 FordPrefect_a 431 + 338 407 83420 61 4 0 8 chain 9494 chr5 181538259 + 168338738 168338914 L1MA5A 2387 + 2144 2299 71491 11 2 0 15 0 2 10 1 0 33 34 15 65 1 0 4 chain 15994 chr5 181538259 + 168412674 168412938 MER2 342 + 21 320 61029 30 50 85 184 chain 27829 chr5 181538259 + 168438230 168438579 THE1C 375 + 33 375 45139 5 3 0 87 3 0 224 1 0 26 chain 6861 chr5 181538259 + 168441151 168441235 L1MB2 1706 + 1463 1547 78096 84 chain 20829 chr5 181538259 + 168470557 168470829 AluSp 311 + 5 289 55328 168 12 23 49 0 1 43 chain 48162 chr5 181538259 + 168542826 168543371 L1PA3long 6157 + 5613 6155 30233 285 1 0 239 2 0 18 chain 3247 chr5 181538259 + 168561018 168561052 tRNA-Gly-GGA 38 + 4 38 97505 34 chain 47597 chr5 181538259 + 168580929 168581563 MER41B 635 + 0 635 30441 14 0 2 76 1 0 33 1 2 319 23 22 167 chain 4117 chr5 181538259 + 168617366 168617444 MER84 505 + 0 80 90665 30 18 20 30 chain 4081 chr5 181538259 + 168624934 168624982 MER20 218 + 166 214 90889 48 chain 500462 chr5 181538259 + 168630706 168637033 L1PA5 6144 + 0 6142 3112 113 11 25 78 1 0 30 38 38 86 8 21 18 15 14 51 30 5 469 21 0 80 1 2 4 1 0 27 29 15 89 11 5 433 6 0 245 5 7 221 2 3 234 7 1 381 15 0 4 123 0 429 3 8 156 1 0 59 0 2 5 7 5 1612 0 1 355 14 17 782 5 0 12 chain 8956 chr5 181538259 + 168633490 168633593 L1PA5 6144 + 3523 3626 71722 103 chain 18779 chr5 181538259 + 168703360 168703647 MER1B 344 + 48 336 57806 33 6 0 6 0 6 123 4 0 37 24 29 54 chain 10866 chr5 181538259 + 168733585 168733757 L1PA8 5853 + 5648 5816 68748 31 22 20 40 3 2 19 1 0 56 chain 8971 chr5 181538259 + 168791497 168791608 HY1 111 + 0 111 72624 111 chain 19036 chr5 181538259 + 168900653 168900923 L1PB4 2604 + 2280 2552 57512 106 2 0 88 22 26 52 chain 15971 chr5 181538259 + 169134568 169134750 L1PA6 6164 + 5973 6155 61064 182 chain 25076 chr5 181538259 + 169181459 169181755 AluSc 308 + 0 294 49160 131 1 0 113 1 0 50 chain 118680 chr5 181538259 + 169208428 169209954 L1PA7 6471 + 4954 6468 15776 24 1 0 329 23 3 289 0 4 20 1 0 230 0 1 73 8 15 164 8 6 196 0 1 52 13 12 95 chain 38914 chr5 181538259 + 169213023 169213529 L1PA7 6471 + 4518 5059 35416 74 0 2 130 2 1 79 0 2 12 8 7 7 0 1 19 1 33 174 chain 5495 chr5 181538259 + 169274061 169274200 MER5A 189 + 20 162 83257 4 0 1 39 60 62 36 chain 18451 chr5 181538259 + 169306871 169307240 THE1D 372 + 11 372 58165 45 10 1 17 3 0 6 20 25 4 1 0 57 46 47 11 1 0 129 0 6 6 6 0 7 chain 21355 chr5 181538259 + 169315535 169315758 AluYa5 310 + 85 308 54696 223 chain 8478 chr5 181538259 + 169361515 169361626 MLT1C 463 + 351 463 73726 56 0 1 55 chain 18204 chr5 181538259 + 169372666 169372983 L1PB3 3668 + 3160 3476 58458 41 14 15 60 8 10 5 1 0 32 14 23 19 0 3 7 15 0 16 1 0 63 0 1 21 chain 196473 chr5 181538259 + 169378699 169381053 L1PA7 6471 + 4113 6468 9830 916 10 6 162 0 12 67 0 1 339 1 4 90 4 1 40 0 1 54 0 1 224 10 0 161 0 1 24 1 0 251 chain 158062 chr5 181538259 + 169381054 169383544 L1PB1 5432 + 3279 5420 11847 49 10 9 4 0 1 263 2 0 106 0 1 15 4 8 186 2 4 4 1 0 10 325 0 512 1 0 176 1 2 72 0 2 91 3 4 301 10 9 6 3 0 24 1 0 8 1 0 11 4 0 12 2 0 51 3 2 14 1 0 44 1 0 16 3 0 6 17 6 19 6 5 14 2 0 24 1 0 18 0 3 12 0 2 5 3 0 10 chain 96215 chr5 181538259 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169610590 AluSp 311 + 0 304 47924 91 0 3 34 10 0 176 chain 33093 chr5 181538259 + 169613412 169614145 L1PB1 5432 + 4034 5427 39445 184 1 2 76 190 874 50 2 1 15 1 0 41 8 7 12 3 0 13 10 0 15 26 22 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 17478 chr5 181538259 + 169617240 169617458 L1P5 443 + 219 437 59259 218 chain 91944 chr5 181538259 + 169618252 169619316 MER11C 1089 + 0 1073 19349 774 0 8 138 8 9 144 chain 270239 chr5 181538259 + 169620059 169623191 L1P1 4361 + 1 4286 7701 573 1 0 128 12 5 98 0 1160 1252 0 2 931 1 0 136 chain 18732 chr5 181538259 + 169626501 169626780 Tigger1 2417 + 2080 2354 57866 91 12 11 68 11 5 18 0 1 59 1 2 19 chain 3029 chr5 181538259 + 169634782 169634814 Cheshire 1285 + 40 72 99522 32 chain 8086 chr5 181538259 + 169700695 169700797 LTR54 533 + 0 102 74665 102 chain 540232 chr5 181538259 + 169819644 169825775 L1PA5 6144 + 3 6139 1326 864 0 1 841 1 0 373 0 2 387 0 1 692 1 0 1464 1 0 669 0 4 838 chain 4855 chr5 181538259 + 169872810 169872865 MIRb 242 + 78 133 86393 55 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0 18 276 0 1 231 10 11 39 0 1 430 2 1 197 1 2 215 1 0 107 1 0 195 0 30 16 1 6 207 3 4 110 3 0 189 0 1 40 7 6 152 303 0 308 0 1 200 24 6 238 1 0 221 0 9 35 1 0 11 1 0 9 5 1 8 2 0 45 10 9 10 6 5 37 9 8 15 3 0 5 1 0 4 12 3 19 8 5 14 2 0 24 1 0 15 7 6 9 0 1 5 2 0 14 2 0 10 chain 3238 chr5 181538259 + 170584163 170584204 MER117 194 + 109 149 97592 4 1 0 36 chain 15884 chr5 181538259 + 170725124 170725358 L1MA2 4263 + 3857 4084 61176 101 1 0 8 1 0 92 11 6 20 chain 57062 chr5 181538259 + 170799818 170800457 L1PA5 6144 + 4459 5098 27247 639 chain 27957 chr5 181538259 + 170827544 170827960 MER4D1 891 + 0 448 44933 25 6 10 5 3 0 9 0 2 25 0 1 141 0 2 17 4 32 37 1 0 8 0 1 97 1 0 18 1 0 18 chain 9756 chr5 181538259 + 170830876 170830993 MER41B 635 + 518 635 70919 117 chain 14714 chr5 181538259 + 170851613 170851805 L1PB1 5432 + 4933 5127 62658 74 0 4 92 1 2 10 3 0 12 chain 98927 chr5 181538259 + 170966003 170967079 L1PA3long 6157 + 3454 4530 18419 1076 chain 10299 chr5 181538259 + 170970556 170970681 MER85 139 + 4 139 69807 86 0 10 39 chain 22086 chr5 181538259 + 170979459 170979813 THE1B 368 + 0 366 53721 41 1 16 49 1 2 23 24 24 11 5 3 25 7 5 167 chain 119860 chr5 181538259 + 170979815 170981366 THE1B-int 1605 + 0 1605 15559 15 0 2 216 0 11 186 0 25 10 0 2 410 4 5 254 2 12 18 12 15 158 2 1 159 0 1 105 chain 21128 chr5 181538259 + 170996963 170997316 THE1D 372 + 16 372 54977 22 40 41 28 1 0 56 0 2 16 10 12 27 10 9 143 chain 141901 chr5 181538259 + 171005144 171006742 L1PA4 6152 + 4540 6138 12947 761 1 0 700 4 5 132 chain 22045 chr5 181538259 + 171091587 171091927 THE1B 368 + 0 368 53780 40 0 15 48 8 9 80 3 0 6 0 3 7 30 42 118 chain 29068 chr5 181538259 + 171105101 171105406 AluYa5 310 + 1 306 43235 305 chain 59853 chr5 181538259 + 171147761 171148407 SVA_F 1814 + 1166 1813 26413 477 0 1 169 chain 21732 chr5 181538259 + 171175478 171175735 L1PA7 6471 + 5503 5765 54189 65 0 2 51 0 3 141 chain 9279 chr5 181538259 + 171238167 171238296 MER85 139 + 0 139 71954 96 4 14 29 chain 4777 chr5 181538259 + 171283657 171283710 U13 108 + 0 53 86813 53 chain 3697 chr5 181538259 + 171320942 171321002 Tigger2a 444 + 382 443 93629 14 6 7 40 chain 4956 chr5 181538259 + 171361067 171361143 MER96B 391 - 232 309 85861 15 0 1 14 1 0 22 1 2 23 chain 44374 chr5 181538259 + 171361287 171361840 MER41A 554 + 0 554 31900 452 1 2 100 chain 24745 chr5 181538259 + 171365722 171366013 AluSp 311 + 4 295 49663 291 chain 35489 chr5 181538259 + 171369079 171369551 LTR7B 505 + 0 505 37732 110 9 21 70 14 12 19 1 25 79 1 0 169 chain 6321 chr5 181538259 + 171391058 171391144 Tigger3a 397 + 196 310 79925 27 0 2 22 1 27 36 chain 160165 chr5 181538259 + 171552499 171554350 L1PA7 6471 + 4596 6453 11743 201 0 4 820 1 0 77 0 2 606 1 0 18 0 2 127 chain 28841 chr5 181538259 + 171753437 171753774 L1PA5 6144 + 5761 6144 43566 276 2 48 59 chain 17677 chr5 181538259 + 171803972 171804221 L1PA8 5853 + 5608 5853 59036 69 3 2 13 2 1 47 9 8 12 1 0 93 chain 3254 chr5 181538259 + 171827484 171827547 L1MC4 1079 + 29 91 97439 35 15 14 13 chain 4200 chr5 181538259 + 171835884 171835934 MER53 195 + 14 64 90121 50 chain 19904 chr5 181538259 + 171843555 171843813 AluSc 308 + 20 273 56527 22 5 0 80 0 1 7 1 0 143 chain 38158 chr5 181538259 + 171886146 171886569 L1PA4 6152 + 5697 6138 35940 80 0 18 343 chain 38301 chr5 181538259 + 171915802 171916250 L1PA5 6144 + 5697 6143 35841 248 1 0 57 0 1 129 3 1 10 chain 18792 chr5 181538259 + 171930530 171930739 SVA_E 1901 + 1692 1896 57795 198 5 0 6 chain 14766 chr5 181538259 + 171952790 171952981 MER30 238 + 38 238 62578 70 9 19 41 1 0 70 chain 23263 chr5 181538259 + 172020201 172020552 Tigger3b 1229 + 291 642 51983 25 0 6 8 2 0 132 8 7 83 24 21 69 chain 17872 chr5 181538259 + 172062422 172062811 L1MB3 1562 + 1112 1480 58805 4 0 1 48 69 70 117 2 1 45 65 43 39 chain 56510 chr5 181538259 + 172300853 172301472 L1PA3long 6157 + 5367 5985 27423 457 1 0 161 chain 4852 chr5 181538259 + 172301919 172301981 MER21C 908 + 600 661 86417 44 1 0 17 chain 42733 chr5 181538259 + 172315368 172315893 MER41A 554 + 0 526 32929 134 0 1 391 chain 31862 chr5 181538259 + 172316112 172316535 MER57A1 433 + 8 433 40449 252 17 18 78 0 1 76 chain 3413 chr5 181538259 + 172341956 172341995 MSTB 430 + 391 430 95969 39 chain 27670 chr5 181538259 + 172352538 172352892 THE1A 353 + 0 353 45369 110 1 0 118 0 1 5 2 1 118 chain 6473 chr5 181538259 + 172364794 172364867 MER63A 208 + 86 159 79432 73 chain 54465 chr5 181538259 + 172396988 172397648 MER11B 1079 + 392 1057 28064 145 0 1 4 6 5 135 0 1 87 1 3 124 0 1 135 0 1 23 chain 80549 chr5 181538259 + 172399515 172400617 HERVK11-int 2540 + 1180 2235 21523 8 3 0 27 10 0 11 1 0 27 12 1 36 21 1 428 17 12 92 0 1 11 1 0 190 6 5 69 1 0 6 0 5 125 chain 81740 chr5 181538259 + 172401611 172402639 MER11B 1079 + 7 1042 21291 146 18 5 158 1 18 203 0 1 4 11 10 17 6 5 107 0 1 88 1 3 190 0 1 78 chain 11752 chr5 181538259 + 172405993 172406132 MER85 139 + 0 139 67307 139 chain 11868 chr5 181538259 + 172433086 172433273 Tigger3a 397 + 140 315 67075 13 31 19 143 chain 2047 chr5 181538259 + 172441035 172441099 MADE2 80 + 0 74 106075 32 1 11 31 chain 30025 chr5 181538259 + 172481212 172481648 MER1A 529 + 100 523 42027 42 6 7 91 0 1 100 0 1 114 39 23 44 chain 9399 chr5 181538259 + 172539890 172540002 MLT1A0 366 + 254 366 71706 112 chain 32358 chr5 181538259 + 172555388 172555822 MLT2A1 477 + 0 477 40072 170 4 1 10 0 1 17 0 1 113 0 10 62 21 55 37 chain 50860 chr5 181538259 + 172613454 172614266 L1MA8 2339 + 209 997 29252 147 107 93 29 2 0 47 1 0 52 8 0 226 5 3 56 0 3 132 chain 3291 chr5 181538259 + 172623039 172623086 MIRb 242 + 68 116 97095 5 1 0 36 0 2 5 chain 85552 chr5 181538259 + 172657321 172658287 LTR13A 966 + 0 966 20529 820 1 0 75 0 1 70 chain 3480 chr5 181538259 + 172673554 172673597 MER53 195 - 14 57 95380 43 chain 4102 chr5 181538259 + 172674531 172674613 MER5B 177 + 31 115 90759 16 24 26 42 chain 2822 chr5 181538259 + 172743238 172743270 MIRb 242 + 87 119 101509 32 chain 4949 chr5 181538259 + 172782527 172782586 MSTD 398 + 339 398 85896 59 chain 9673 chr5 181538259 + 172784312 172784441 MSTA 426 + 7 154 71112 106 4 22 19 chain 30437 chr5 181538259 + 172787749 172788140 LTR7 482 + 0 474 41640 86 1 51 87 1 31 5 0 2 42 0 1 169 chain 11494 chr5 181538259 + 172809662 172809867 MER21A 919 + 708 919 67756 89 7 23 18 4 6 9 4 0 20 3 0 5 3 0 34 2 0 7 chain 4724 chr5 181538259 + 172868484 172868599 L1MC1 2226 + 1994 2100 87101 39 0 1 13 46 36 17 chain 7154 chr5 181538259 + 173003910 173004045 MER20 218 + 87 216 77086 4 1 0 13 6 7 47 16 10 48 chain 51195 chr5 181538259 + 173185064 173185843 L1PB1 5432 + 4603 5374 29169 24 3 0 98 0 18 156 1 3 199 21 23 20 1 0 14 5 1 9 6 4 48 2 1 15 1 0 46 1 0 11 26 15 19 2 0 5 1 0 14 2 0 24 1 0 4 chain 4535 chr5 181538259 + 173204028 173204085 HY3 101 + 36 93 88134 57 chain 27154 chr5 181538259 + 173276492 173276863 L1PA8 5853 + 5487 5853 46034 77 1 0 44 2 0 65 17 17 50 2 1 19 1 0 93 chain 4525 chr5 181538259 + 173383930 173383981 Eulor12 88 + 37 88 88184 51 chain 11990 chr5 181538259 + 173413974 173414196 Tigger2 2703 + 2324 2530 66854 14 39 9 23 1 0 5 1 10 20 2 8 117 chain 3119 chr5 181538259 + 173419272 173419309 MLT1J 494 + 94 131 98634 37 chain 39174 chr5 181538259 + 173539176 173539676 L1PA8 5853 + 5361 5853 35231 154 1 0 49 1 0 46 2 0 60 0 2 6 4 1 9 1 0 52 2 1 19 2 1 92 chain 3029 chr5 181538259 + 173572178 173572210 Tigger4a 237 - 205 237 99523 32 chain 46164 chr5 181538259 + 173665791 173666491 L1PB 1623 + 828 1515 30979 82 0 6 381 38 11 42 4 5 4 1 0 35 0 18 34 1 0 4 5 4 30 1 0 4 3 0 13 5 1 13 chain 42483 chr5 181538259 + 173684537 173685111 LTR12F 595 + 0 594 33072 102 1 2 41 2 0 32 0 8 25 14 5 24 0 24 129 2 0 202 chain 45582 chr5 181538259 + 173725685 173726293 L1PA16 3655 + 2020 2646 31270 52 0 2 138 7 8 19 1 0 49 6 0 114 0 22 222 chain 8921 chr5 181538259 + 173750503 173750642 MLT1B 390 + 145 294 72737 68 19 29 52 chain 21415 chr5 181538259 + 173788167 173788444 AluSx4 309 + 2 273 54620 232 10 4 35 chain 3900 chr5 181538259 + 173822357 173822404 MER33 330 + 240 287 92119 47 chain 3194 chr5 181538259 + 173829413 173829449 MIR 256 + 56 92 97942 36 chain 23525 chr5 181538259 + 173838581 173838864 AluSg7 307 + 11 295 51544 120 0 1 163 chain 25817 chr5 181538259 + 173885674 173886026 THE1D 372 + 0 370 47994 53 13 23 31 0 1 20 0 4 58 3 6 174 chain 28095 chr5 181538259 + 174042358 174042675 L1PA5 6144 + 5821 6138 44727 4 0 1 4 1 0 308 chain 23563 chr5 181538259 + 174066768 174067018 AluYa5 310 + 60 310 51484 250 chain 5526 chr5 181538259 + 174206974 174207060 L1PB3 3668 + 3482 3566 83128 13 1 0 8 1 0 11 0 2 12 3 1 37 chain 10496 chr5 181538259 + 174253912 174254040 MER85 139 + 2 139 69424 87 0 10 17 1 0 23 chain 13657 chr5 181538259 + 174267345 174268649 L1PB1 5432 + 4101 5409 64072 22 0 22 25 1008 937 7 1 0 21 1 0 12 16 11 9 2 0 53 2 1 16 1 0 44 1 0 11 0 64 14 2 1 20 1 4 9 1 0 5 chain 33765 chr5 181538259 + 174278022 174278475 MLT2A1 477 + 0 464 38877 169 4 1 20 6 0 195 7 29 11 2 0 39 chain 29680 chr5 181538259 + 174352031 174352383 L1PA6 6164 + 5809 6162 42391 199 0 1 153 chain 4739 chr5 181538259 + 174364620 174364673 MER5A 189 + 17 70 87016 53 chain 6305 chr5 181538259 + 174404675 174404753 MLT1B 390 + 295 373 79981 78 chain 480523 chr5 181538259 + 174436685 174443190 L1PA8A 6298 + 100 6290 3620 19 3 0 8 1 0 4 6 0 18 1 0 8 4 3 9 2 1 7 1 0 12 2 0 15 6 4 12 57 48 42 1 0 24 10 4 70 18 14 10 1 0 3 1 0 694 3 0 13 1 0 82 1 0 437 3 7 112 0 1 357 0 1 131 7 15 72 0 1 53 4 2 56 0 10 22 2 0 68 0 1 432 5 1 11 332 0 358 11 9 24 1 0 42 0 3 244 6 4 127 1 0 53 0 1 392 0 3 43 0 1 65 0 5 436 0 1 77 0 4 210 15 10 363 14 12 69 2 3 36 0 11 75 0 27 568 chain 504813 chr5 181538259 + 174465904 174472053 L1PA6 6164 + 0 6162 2979 451 19 0 78 14 8 32 1 0 233 0 13 438 0 1 20 0 1 934 3 5 44 0 2 208 0 1 93 0 1 539 0 10 73 1 0 55 0 4 30 0 1 31 1 0 7 15 15 195 1 2 245 0 1 594 0 4 1585 0 3 199 4 0 6 chain 127172 chr5 181538259 + 174498141 174499711 THE1A-int 1579 + 0 1574 14400 15 0 2 346 0 1 884 0 1 114 0 1 198 1 0 12 chain 5420 chr5 181538259 + 174537502 174537588 L1MB2 1706 + 117 202 83602 39 9 8 38 chain 87001 chr5 181538259 + 174539417 174540364 L1PA2 6032 + 5085 6032 20232 947 chain 62988 chr5 181538259 + 174652345 174653248 L1MA2 4263 + 3225 4102 25629 339 11 11 9 2 0 7 1 0 71 1 0 52 0 3 6 0 2 81 3 0 51 2 0 99 11 9 37 24 10 46 7 0 16 0 1 27 chain 3416 chr5 181538259 + 174685114 174685155 L1MB1 2102 + 1897 1937 95928 26 1 0 14 chain 20786 chr5 181538259 + 174797214 174797511 L1PA8 5853 + 5550 5847 55385 14 2 1 45 2 0 69 10 15 44 4 3 19 2 1 86 chain 6849 chr5 181538259 + 174803556 174803718 THE1C 375 + 0 161 78145 15 3 1 60 56 57 28 chain 10133 chr5 181538259 + 174836202 174836333 THE1D-int 1627 + 0 130 70140 10 4 3 117 chain 22367 chr5 181538259 + 174851440 174851704 AluSg7 307 + 10 275 53316 121 0 1 143 chain 11975 chr5 181538259 + 174881142 174881366 LTR12C 1709 + 932 1078 66878 90 78 0 56 chain 137999 chr5 181538259 + 174885406 174886953 L1PA4 6152 + 4596 6152 13268 686 0 4 6 1 3 713 0 1 135 0 2 6 chain 10762 chr5 181538259 + 174891869 174891996 LTR8 732 + 597 724 68935 127 chain 9383 chr5 181538259 + 174901989 174902166 LTR12C 1709 + 932 1109 71739 37 0 41 58 45 4 37 chain 11544 chr5 181538259 + 174943040 174943169 L1PA2 6032 + 5887 6016 67673 129 chain 7680 chr5 181538259 + 175004161 175004255 THE1C-int 1605 + 1505 1599 75682 94 chain 36410 chr5 181538259 + 175018212 175018688 MER4A1 472 + 0 472 37135 95 0 1 234 9 0 68 6 7 23 0 3 41 chain 26443 chr5 181538259 + 175025759 175026113 THE1B 368 + 4 368 47067 40 0 15 110 6 5 26 2 0 87 2 1 5 1 0 75 chain 10755 chr5 181538259 + 175077252 175077618 MER101-int 1169 + 651 985 68947 63 124 98 43 1 0 6 50 55 40 19 9 20 chain 19879 chr5 181538259 + 175096101 175096362 L1PA8A 6298 + 6028 6290 56563 143 0 1 4 17 16 45 0 1 52 chain 33184 chr5 181538259 + 175138614 175139001 L1PA3long 6157 + 5771 6157 39374 229 7 0 140 0 6 11 chain 45249 chr5 181538259 + 175146407 175146986 MER11A 1151 + 6 674 31451 102 0 2 35 0 88 61 4 0 146 5 6 92 0 1 117 0 1 17 chain 9096 chr5 181538259 + 175201630 175201751 Tigger1 2417 + 1895 2015 72356 83 1 0 37 chain 41774 chr5 181538259 + 175272967 175273438 L1PA3long 6157 + 5688 6157 33507 464 2 0 5 chain 29874 chr5 181538259 + 175339768 175340366 L1PA15 4387 + 3783 4356 42157 29 2 0 14 5 1 12 3 1 48 16 14 5 1 0 20 6 5 188 20 19 46 1 0 22 67 63 40 8 6 13 5 0 27 chain 29711 chr5 181538259 + 175345742 175346131 L1PA7 6471 + 6076 6469 42357 17 3 8 212 0 1 104 0 9 8 9 0 24 2 0 10 chain 552585 chr5 181538259 + 175397769 175403801 L1PA2 6032 + 0 6032 575 66 0 1 189 1 0 3304 2 1 1695 1 0 61 0 2 713 chain 71103 chr5 181538259 + 175409367 175410205 L1PA6 6164 + 5320 6159 23742 499 0 1 183 8 0 7 1 9 140 chain 24876 chr5 181538259 + 175424398 175424794 L1PA17 2846 + 2301 2693 49483 39 14 27 11 1 0 125 4 0 10 5 0 78 2 0 9 1 0 32 1 0 17 4 3 6 2 0 35 chain 15694 chr5 181538259 + 175459867 175460087 L1PA8 5853 + 5638 5853 61408 40 2 1 14 5 3 44 2 1 19 1 0 93 chain 10378 chr5 181538259 + 175471062 175471193 L1PA6 6164 + 6031 6161 69655 69 2 1 60 chain 15700 chr5 181538259 + 175528273 175528480 MER2 342 + 135 340 61400 73 2 0 132 chain 33944 chr5 181538259 + 175623227 175623768 LTR72 515 + 0 478 38748 193 24 25 171 61 0 14 9 6 69 chain 50054 chr5 181538259 + 175635993 175636755 L1PB4 2604 + 1738 2504 29542 31 1 0 66 14 21 38 5 4 47 1 0 89 40 36 5 0 3 7 0 2 118 2 0 26 0 3 152 8 6 112 chain 28514 chr5 181538259 + 175697181 175697480 AluYk12 309 + 0 299 44101 299 chain 278017 chr5 181538259 + 175720001 175723033 L1PA3long 6157 + 3119 6157 7489 809 0 1 1381 0 4 374 0 2 450 1 0 17 chain 25793 chr5 181538259 + 175760017 175760388 THE1C 375 + 0 375 48026 176 20 20 15 6 8 59 0 1 15 0 2 53 1 0 26 chain 118569 chr5 181538259 + 175760388 175762308 THE1C-int 1605 + 0 1599 15800 14 32 31 44 0 1 23 0 3 324 16 23 229 8 9 8 3 0 487 4 5 57 2 0 175 12 4 59 320 0 103 chain 27109 chr5 181538259 + 175762314 175762686 THE1C 375 + 0 375 46114 194 1 2 15 6 8 75 0 2 52 3 1 26 chain 21740 chr5 181538259 + 175774177 175774526 MER41E 591 + 0 532 54181 49 0 182 165 54 55 81 chain 15545 chr5 181538259 + 175945733 175945928 L1MA4 2864 + 2501 2693 61591 175 3 0 17 chain 44664 chr5 181538259 + 175968765 175969318 MER41A 554 + 0 554 31760 104 0 1 261 0 1 69 1 0 118 chain 22809 chr5 181538259 + 176012427 176012732 AluSq10 312 + 10 300 52648 207 8 0 34 4 3 28 7 1 17 chain 535528 chr5 181538259 + 176051763 176057881 L1PA5 6144 + 0 6138 1592 182 5 0 6 0 5 673 0 2 166 0 2 13 0 1 189 1 0 1747 1 0 256 1 5 131 0 3 75 0 3 1695 3 0 16 0 1 68 1 0 55 1 0 227 0 2 152 0 2 312 0 7 142 chain 39235 chr5 181538259 + 176131740 176132293 LTR61 567 + 0 567 35187 22 10 11 22 0 11 48 0 1 76 1 2 29 1 0 170 0 3 22 6 5 105 12 11 29 chain 7653 chr5 181538259 + 176137432 176137532 LTR15 485 + 389 485 75742 47 4 0 49 chain 50949 chr5 181538259 + 176172258 176173225 LTR6A 649 + 0 649 29227 52 0 1 51 1 0 335 0 1 147 319 0 62 chain 46789 chr5 181538259 + 176198274 176198830 L1PA7 6471 + 5905 6468 30732 127 1 0 285 0 7 85 0 1 58 chain 73761 chr5 181538259 + 176214492 176215360 SVA_A 1864 + 582 1857 23152 104 5 43 34 1 0 113 1 366 162 0 1 30 0 2 412 0 2 6 chain 34811 chr5 181538259 + 176215750 176216189 MER83 447 + 0 440 38148 217 0 1 222 chain 6269 chr5 181538259 + 176237684 176237808 MER30 238 + 88 238 80095 22 14 25 18 1 7 40 2 11 27 chain 8755 chr5 181538259 + 176260209 176260415 L1PB1 5432 + 5196 5391 73089 24 2 1 9 7 6 41 25 22 28 7 4 15 0 5 6 7 0 13 1 0 21 chain 503988 chr5 181538259 + 176272483 176287631 L1PA5 6144 + 16 6135 3000 77 0 7 20 0 4 57 6 1 8 0 5 78 0 1 243 0 3 520 9093 0 1716 0 2 127 1 0 221 5 1 89 0 78 235 36 0 803 1 0 29 0 4 277 1 0 520 0 5 146 1 5 667 1 0 170 chain 23777 chr5 181538259 + 176301107 176301444 THE1B 368 + 0 342 51147 113 0 1 55 1 0 29 0 3 5 5 9 17 1 0 7 11 10 93 chain 162703 chr5 181538259 + 176304240 176306931 SVA_F 1814 + 25 1814 11563 525 0 1 334 45 0 34 341 0 32 0 15 172 533 0 522 0 1 153 chain 10081 chr5 181538259 + 176305189 176305320 SVA_F 1814 + 995 1126 47930 131 chain 13852 chr5 181538259 + 176305361 176305519 SVA_F 1814 + 935 1110 42224 11 0 16 48 0 1 99 chain 18858 chr5 181538259 + 176305723 176306210 SVA_F 1814 + 898 1120 55797 49 1 16 74 230 0 52 49 0 27 1 0 4 chain 8207 chr5 181538259 + 176305851 176305945 SVA_F 1814 + 1168 1260 74398 2 1 0 17 1 0 73 chain 2871 chr5 181538259 + 176305982 176306050 SVA_F 1814 + 881 947 59644 49 2 0 17 chain 2099 chr5 181538259 + 176306051 176306077 SVA_F 1814 + 962 988 103096 26 chain 4691 chr5 181538259 + 176306129 176306178 SVA_F 1814 + 1138 1187 65398 49 chain 4404 chr5 181538259 + 176306210 176306256 SVA_F 1814 + 1219 1265 65398 46 chain 5058 chr5 181538259 + 176307260 176307366 L1MB2 1706 + 1582 1689 85366 16 1 0 13 1 0 5 1 2 9 18 20 42 chain 39500 chr5 181538259 + 176418431 176419583 MER41A 554 + 39 554 35013 122 328 0 4 1 0 73 0 8 187 316 0 121 chain 148428 chr5 181538259 + 176433060 176434815 SVA_D 2077 + 0 2065 12459 37 5 0 14 26 4 587 6 5 13 0 3 225 42 271 28 0 1 30 0 2 9 0 1 73 0 98 43 0 1 276 0 3 341 chain 3630 chr5 181538259 + 176433976 176434015 SVA_D 2077 + 811 850 70875 39 chain 37740 chr5 181538259 + 176442915 176443432 L1PA8 5853 + 5326 5853 36247 109 0 11 18 0 4 96 1 0 46 2 0 78 8 7 45 2 1 9 0 1 9 1 0 93 chain 24560 chr5 181538259 + 176462354 176462639 AluSc 308 + 11 296 49922 285 chain 22701 chr5 181538259 + 176475495 176475785 AluSq10 312 + 1 300 52826 92 0 9 72 10 10 116 chain 15431 chr5 181538259 + 176480769 176480966 L1PA7 6471 + 6278 6466 61746 19 0 1 15 8 0 146 2 0 7 chain 7975 chr5 181538259 + 176556703 176556803 HY3 101 + 0 100 74937 100 chain 4530 chr5 181538259 + 176625297 176625351 MER5A 189 + 53 107 88156 54 chain 33431 chr5 181538259 + 176721103 176721588 LTR12C 1709 + 1154 1709 39149 61 44 13 238 0 101 11 0 2 41 16 14 74 chain 29710 chr5 181538259 + 176772546 176773039 LTR12F 595 + 0 595 42360 100 68 13 29 5 97 47 0 64 38 2 0 22 9 12 173 chain 2423 chr5 181538259 + 176772652 176772711 LTR12F 595 + 158 267 97526 19 17 8 18 0 59 5 chain 11310 chr5 181538259 + 176841775 176841915 L1PB1 5432 + 4666 4808 68068 37 0 2 103 chain 79383 chr5 181538259 + 176945380 176946277 MER11D 897 + 0 897 21766 218 0 2 64 1 0 496 1 0 117 chain 167134 chr5 181538259 + 176960668 176963167 SVA_F 1814 + 9 1814 11261 872 1 0 33 48 0 34 77 14 247 582 0 605 chain 2288 chr5 181538259 + 176961596 176961622 SVA_F 1814 + 937 978 48301 11 0 15 15 chain 6777 chr5 181538259 + 176961656 176961733 SVA_F 1814 + 1012 1089 48301 77 chain 9587 chr5 181538259 + 176961980 176962165 SVA_F 1814 + 984 1168 53294 27 1 0 157 chain 7572 chr5 181538259 + 176962186 176962264 SVA_F 1814 + 1011 1089 60880 78 chain 23456 chr5 181538259 + 176962264 176962529 SVA_F 1814 + 898 1177 51661 49 0 15 39 1 0 10 1 0 116 0 1 49 chain 3057 chr5 181538259 + 176962530 176962562 SVA_F 1814 + 1001 1033 71985 32 chain 149071 chr5 181538259 + 176983261 176985106 SVA_A 1864 + 19 1862 12412 27 0 10 503 0 2 49 28 25 16 25 22 60 3 0 28 0 2 121 2 1 167 0 1 5 3 0 86 1 0 24 3 0 35 7 5 38 7 8 29 7 8 571 chain 2082 chr5 181538259 + 176983840 176983868 SVA_A 1864 + 684 709 29552 15 3 0 10 chain 6896 chr5 181538259 + 177011725 177011803 MER11A 1151 + 0 78 77970 78 chain 57661 chr5 181538259 + 177056253 177056918 L1PA5 6144 + 5466 6137 27065 212 0 6 453 chain 3712 chr5 181538259 + 177274422 177274482 MADE1 96 + 42 96 93515 7 8 0 19 0 2 26 chain 19034 chr5 181538259 + 177326089 177326413 LTR24C 604 + 4 336 57517 146 0 1 31 42 45 32 15 19 19 0 1 14 1 0 24 chain 13283 chr5 181538259 + 177499011 177499624 MER1B 344 + 0 338 64654 14 1 0 5 3 22 45 19 43 6 3 0 87 377 63 53 chain 74276 chr5 181538259 + 177561136 177562133 LTR13 1007 + 0 1007 23008 73 2 0 246 5 7 54 9 10 7 0 1 230 2 1 56 1 2 12 33 38 171 0 5 62 3 1 31 chain 12521 chr5 181538259 + 177620240 177620506 L1PB1 5432 + 5178 5423 65946 39 18 19 45 1 0 15 3 0 12 9 0 15 2 0 9 1 0 14 2 0 24 2 1 20 9 8 5 1 0 14 1 0 5 chain 378930 chr5 181538259 + 177658933 177664026 L1PA7 6471 + 1974 6461 5502 41 0 1 146 0 1 183 319 0 106 7 10 102 1 3 44 2 1 30 0 4 224 0 1 225 0 4 143 0 1 233 1 0 26 1 0 11 310 0 495 2 1 170 2 7 369 8 9 838 0 1 57 0 1 159 1 0 221 9 10 229 0 1 301 1 2 76 chain 140273 chr5 181538259 + 177688053 177689723 LTR12C 1709 + 0 1709 13080 437 0 1 265 7 48 36 7 8 42 1 0 275 1 0 4 4 2 106 0 4 139 4 0 342 chain 95248 chr5 181538259 + 177702207 177703543 MSTA-int 1630 + 254 1576 18878 31 13 5 224 0 12 95 1 0 5 4 5 20 7 7 65 1 0 47 1 11 85 16 18 84 48 19 276 0 1 252 1 0 60 chain 9461 chr5 181538259 + 177704579 177704711 MSTA 426 + 57 190 71581 40 6 7 86 chain 477632 chr5 181538259 + 177753850 177759346 L1PA4 6152 + 0 5519 3682 956 2 0 83 0 1 117 0 2 1833 1 0 126 0 1 130 1 5 135 0 3 71 0 3 685 0 3 867 0 1 150 0 1 50 1 0 55 0 4 22 0 4 211 chain 567330 chr5 181538259 + 177772245 177778274 L1HS 6032 + 0 6032 33 4332 0 3 1697 chain 64130 chr5 181538259 + 177838539 177839571 HSMAR2 1300 + 4 985 25389 23 2 0 5 4 0 13 1 0 17 2 1 159 21 5 121 79 74 92 1 0 4 0 6 259 2 1 61 0 2 52 34 6 80 chain 59938 chr5 181538259 + 177921760 177922497 L1PA8 5853 + 5121 5853 26392 400 0 3 38 1 0 20 1 0 27 2 0 73 1 0 5 2 1 52 2 1 19 1 0 93 chain 38486 chr5 181538259 + 177941236 177941799 LTR19B 566 + 0 566 35723 106 3 0 26 0 4 31 7 0 120 0 1 13 7 0 135 35 34 21 0 9 11 1 4 32 0 4 15 chain 9140 chr5 181538259 + 178065351 178065517 MER44A 345 + 111 300 72257 35 10 32 37 0 1 46 14 15 14 1 0 9 chain 10018 chr5 181538259 + 178155421 178155539 AluY 311 + 0 124 70379 13 0 7 89 1 0 15 chain 5510 chr5 181538259 + 178181369 178181439 L1MB8 1703 + 1469 1539 83198 70 chain 28139 chr5 181538259 + 178369496 178369849 THE1B 368 + 2 368 44655 43 1 17 130 3 0 176 chain 9182 chr5 181538259 + 178370304 178370461 L1MA8 2339 + 1925 2079 72161 30 2 0 23 33 32 69 chain 9032 chr5 181538259 + 178393182 178393510 L1MB3 1562 + 1237 1552 72493 48 170 148 6 2 0 29 1 0 7 1 14 34 1 0 29 chain 27962 chr5 181538259 + 178419648 178420008 MER57A1 433 + 0 361 44931 280 4 5 76 chain 3922 chr5 181538259 + 178448865 178448909 MLT1A1 405 + 295 339 91970 44 chain 19954 chr5 181538259 + 178481791 178482032 L1PA5 6144 + 5902 6144 56454 70 1 2 170 chain 12128 chr5 181538259 + 178510542 178510677 L1PA3long 6157 + 6022 6157 66610 135 chain 21837 chr5 181538259 + 178562307 178562581 AluY 311 + 35 311 54056 91 0 1 44 7 6 91 0 2 41 chain 3682 chr5 181538259 + 178615596 178615639 Charlie2b 853 + 657 700 93728 43 chain 3935 chr5 181538259 + 178661191 178661240 MADE1 96 + 46 96 91863 23 0 1 26 chain 123604 chr5 181538259 + 178665465 178666822 L1PA4 6152 + 4609 5967 14916 278 0 1 1079 chain 28070 chr5 181538259 + 178677450 178677942 MER57A1 433 + 0 433 44766 199 60 1 23 61 59 74 0 1 46 0 1 29 chain 5013 chr5 181538259 + 178703571 178703652 L1MA4 2864 + 2723 2796 85590 14 6 0 28 3 1 30 chain 35717 chr5 181538259 + 178744237 178744775 L1PA16 3655 + 3001 3537 37591 64 23 27 29 11 6 76 1 0 70 0 1 16 2 0 93 2 0 5 0 2 25 8 9 113 chain 45688 chr5 181538259 + 178747802 178748314 L1PA4 6152 + 5647 6152 31215 350 7 0 155 chain 74461 chr5 181538259 + 178798075 178799040 LTR5_Hs 974 + 0 974 22973 452 0 4 170 13 12 18 0 1 17 3 5 31 0 2 64 8 8 117 0 2 8 1 0 63 chain 7023 chr5 181538259 + 178878543 178878630 MER50B 698 + 482 568 77515 59 1 0 27 chain 12184 chr5 181538259 + 178884714 178884860 U1 164 + 0 145 66501 21 1 0 124 chain 24147 chr5 181538259 + 178966159 178966456 AluY 311 + 11 305 50577 19 6 2 100 0 1 172 chain 27427 chr5 181538259 + 179010842 179011598 MER4A1 472 + 0 472 45665 182 389 93 113 5 17 67 chain 43198 chr5 181538259 + 179040598 179041102 MER9a2 513 + 0 513 32650 58 0 4 319 0 4 44 0 1 83 chain 14431 chr5 181538259 + 179053376 179053575 HERVE_a-int 7009 + 1687 1896 62991 32 1 0 25 1 0 14 1 0 57 0 3 36 0 9 27 0 1 5 chain 546741 chr5 181538259 + 179101069 179107073 L1PA3long 6157 + 1 6149 925 99 0 1 51 0 1 264 0 1 363 0 128 920 2 1 807 0 3 2239 0 4 427 0 4 447 0 3 385 chain 5927 chr5 181538259 + 179389609 179389774 MER20 218 + 49 215 81370 19 74 76 12 1 0 59 chain 26287 chr5 181538259 + 179397548 179397894 THE1A 353 + 6 350 47294 103 2 1 76 1 0 164 chain 24514 chr5 181538259 + 179507598 179507903 AluSq10 312 + 9 312 50002 102 6 4 197 chain 4605 chr5 181538259 + 179553044 179553103 MER45C 884 + 96 158 87778 11 0 3 48 chain 6024 chr5 181538259 + 179595197 179595261 AluSz 310 + 0 64 80989 64 chain 27966 chr5 181538259 + 179612238 179612542 AluYa5 310 + 0 301 44925 132 3 0 169 chain 10237 chr5 181538259 + 179747389 179747974 L1MB2 1706 + 1266 1557 69928 17 37 44 11 1 2 72 320 9 12 4 8 41 41 46 29 chain 4149 chr5 181538259 + 179756067 179756113 MER30 238 + 190 236 90466 46 chain 11625 chr5 181538259 + 179783479 179783680 Tigger2b_Pri 1066 + 56 255 67527 29 5 4 23 35 34 109 chain 13973 chr5 181538259 + 179789400 179789588 THE1B 368 + 169 368 63630 23 3 0 80 1 16 25 1 0 55 chain 23873 chr5 181538259 + 179857166 179857479 AluSc 308 + 0 292 50991 23 14 0 248 7 0 21 chain 185880 chr5 181538259 + 180150661 180152719 L1PA4 6152 + 4084 6152 10303 583 2 1 1012 1 7 454 0 5 6 chain 4937 chr5 181538259 + 180186587 180186648 L1MB5 1630 + 33 94 85950 61 chain 23216 chr5 181538259 + 180341919 180342262 THE1B 368 + 0 368 52059 68 2 18 83 1 0 29 35 45 125 chain 4892 chr5 181538259 + 180365205 180365294 Tigger1 2417 + 2202 2293 86194 25 22 24 42 chain 41750 chr5 181538259 + 180452995 180453592 LTR12F 595 + 0 595 33519 103 0 1 39 3 1 33 0 8 25 14 5 173 3 0 22 3 4 13 4 5 59 4 5 99 chain 3704 chr5 181538259 + 180456112 180456166 MER51A 677 + 178 223 93591 22 9 0 23 chain 26008 chr5 181538259 + 180603619 180603917 AluY 311 + 0 296 47706 41 3 0 89 1 2 164 chain 77079 chr5 181538259 + 180607277 180608565 LTR13A 966 + 0 966 22297 77 333 0 51 0 1 28 0 3 224 1 0 97 0 1 17 0 5 166 2 0 29 0 2 180 0 2 83 chain 17388 chr5 181538259 + 180655017 180655221 MLT2A2 560 + 0 206 59372 69 0 2 135 chain 13088 chr5 181538259 + 180659614 180659829 L1PB 1623 + 1236 1451 64951 36 0 3 27 1 0 9 2 0 38 2 0 37 8 11 49 1 0 5 chain 42354 chr5 181538259 + 180679522 180680087 LTR19B 566 + 0 566 33161 106 8 5 23 9 0 298 0 2 16 5 4 37 0 9 12 9 12 42 chain 76977 chr5 181538259 + 180700054 180700992 MER11B 1079 + 0 1062 22321 6 0 1 257 3 0 405 0 122 64 0 1 36 0 2 18 5 6 144 chain 111581 chr5 181538259 + 180702186 180703899 L1PA7 6471 + 5070 6466 16867 551 2 0 63 362 43 412 0 1 157 0 1 4 8 7 15 1 0 5 0 2 125 0 2 8 chain 27392 chr5 181538259 + 180778959 180779592 MER4A 717 + 0 709 45718 49 0 1 72 9 10 34 14 15 8 1 0 143 0 1 6 10 0 18 207 289 26 1 2 35 chain 34736 chr5 181538259 + 180781870 180782332 LTR2 463 + 0 463 38200 142 1 0 4 11 12 202 14 15 88 chain 73732 chr5 181538259 + 180827268 180828232 LTR5_Hs 974 + 0 974 23158 97 0 3 185 0 1 181 0 1 74 8 9 105 1 0 71 0 2 7 3 9 7 8 0 67 8 15 19 20 18 103 chain 79723 chr5 181538259 + 180828430 180829593 MER11A 1151 + 0 1151 21690 85 0 91 54 1 0 64 4 0 32 0 2 115 0 1 238 6 9 54 0 4 59 51 1 12 1 0 3 15 0 11 8 1 11 1 0 3 15 0 10 26 0 60 1 2 142 0 6 81 chain 1772 chr5 181538259 + 180829161 180829193 MER11A 1151 + 859 890 90444 29 1 0 2 chain 5372 chr5 181538259 + 180833125 180833186 MLT1A0 366 + 68 129 83839 61 chain 40073 chr5 181538259 + 180867621 180868124 LTR2C 499 + 8 499 34608 112 0 8 44 41 20 248 0 1 58 chain 39394 chr5 181538259 + 180888925 180889397 L1P2 5180 + 1634 2108 35084 53 3 5 416 chain 528230 chr5 181538259 + 180889409 180895840 L1PA7 6471 + 1 6464 1903 65 5 13 241 0 1 76 7 6 257 0 2 304 0 1 314 1 2 285 5 6 232 1 0 4 0 1 37 1 0 4 0 1 348 1 2 464 0 1 591 0 3 222 1 2 36 0 2 809 0 1 496 1 0 304 0 1 54 3 2 46 1 2 56 1 0 328 4 8 67 0 2 257 0 2 374 4 0 74 0 7 50 chain 12276 chr5 181538259 + 180910190 180910686 MER83 447 + 0 408 66323 54 66 0 39 253 230 76 0 1 8 chain 3651 chr5 181538259 + 180920128 180920208 MADE1 96 + 0 96 94017 18 11 27 51 chain 522927 chr5 181538259 + 180926027 180932355 L1PA7 6471 + 0 6459 2139 403 1 5 204 11 12 636 5 0 434 1 0 65 1 0 603 0 20 227 0 1 30 0 1 520 0 1 779 1 0 266 0 6 584 1 0 344 1 3 158 0 1 28 0 7 9 8 1 245 0 1 28 2 0 76 1 3 437 0 101 85 1 2 133 chain 4527 chr5 181538259 + 180973659 180973709 L1MA9 1812 + 470 520 88176 50 chain 400370 chr5 181538259 + 181007747 181015787 L1PA7 6471 + 1 6064 5150 24 0 1 4 7 13 133 1 0 68 0 15 153 0 1 45 0 1 122 11 19 67 47 50 206 16 0 344 6 7 120 1 4 59 9 0 99 1 3 199 0 1 62 0 4 6 9 5 329 0 4 468 1 3 48 0 10 191 0 4 203 0 4 403 1 0 46 0 4 271 10 7 233 3 4 112 0 1 471 2811 794 233 0 1 4 1 0 44 1 0 21 1 0 315 chain 110513 chr5 181538259 + 181012356 181015158 L1PA6 6164 + 3853 6160 17005 45 1 2 51 0 1 547 1450 954 40 0 1 660 2 0 6 chain 145629 chr5 181538259 + 181016189 181017984 L1PA8 5853 + 4019 5853 12641 191 1 0 42 0 1 180 0 12 87 0 1 146 0 9 321 4 0 23 0 23 509 1 0 30 0 7 7 6 4 67 1 0 9 1 0 7 2 0 44 3 2 19 1 0 93 chain 2935 chr5 181538259 + 181022760 181022796 L1M1 2793 + 1733 1769 100538 36 chain 7168 chr5 181538259 + 181032837 181032964 LTR12D 1347 + 608 752 77046 59 35 52 33 chain 39492 chr5 181538259 + 181039030 181039584 LTR61 567 + 0 567 35017 11 1 0 10 8 9 25 0 11 46 2 0 27 10 15 34 5 0 203 0 5 21 6 5 145 chain 58723 chr5 181538259 + 181095053 181095715 L1PA5 6144 + 5478 6141 26757 34 0 1 628 chain 6881 chr5 181538259 + 181097069 181097142 tRNA-Val-GTG 73 + 0 73 78034 73 chain 7808 chr5 181538259 + 181101839 181101921 tRNA-Leu-CTY 82 + 0 82 75360 82 chain 140628 chr5 181538259 + 181144736 181146944 MER4-int 2692 + 784 2667 13050 7 9 0 43 29 29 39 0 1 201 1 8 177 0 1 51 1 7 110 2 0 407 1 0 80 0 1 82 344 11 86 1 0 28 20 23 94 0 2 221 0 1 5 2 1 167 chain 31835 chr5 181538259 + 181146944 181147364 MER4A1 472 + 17 458 40467 200 14 35 206 chain 4584 chr5 181538259 + 181164153 181164202 tRNA-Val-GTY 66 + 0 49 87883 49 chain 4584 chr5 181538259 + 181169609 181169658 tRNA-Val-GTY 66 + 0 49 87882 49 chain 6881 chr5 181538259 + 181173649 181173722 tRNA-Val-GTG 73 + 0 73 78033 73 chain 18076 chr5 181538259 + 181177926 181178139 MER11A 1151 + 7 228 58587 72 0 8 141 chain 7939 chr5 181538259 + 181187700 181187782 tRNA-Leu-CTY 82 + 0 82 75027 82 chain 6808 chr5 181538259 + 181206867 181206939 tRNA-Ala-GCG 72 + 0 72 78289 72 chain 4120 chr5 181538259 + 181207754 181207797 tRNA-Lys-AAG 49 + 0 43 90655 43 chain 22477 chr5 181538259 + 181292404 181292686 AluSp 311 + 2 286 53152 51 12 14 219 chain 22970 chr5 181538259 + 181395137 181395403 L1PA5 6144 + 5872 6142 52404 216 0 4 50 chain 19163 chr5 181538259 + 181418192 181418487 LTR39 781 + 177 474 57384 90 23 16 138 14 23 30 chain 3268 chr5 181538259 + 181473429 181473470 MLT2B3 573 + 2 43 97310 41 chain 87939 chr5_GL000208v1_random 92689 + 26034 27029 L1PA2 6032 + 5031 6026 20061 53 0 1 605 1 0 336 chain 520303 chr5_GL000208v1_random 92689 + 65282 71296 L1PA3long 6157 + 4 6156 2262 149 16 17 38 0 1 4 1 0 563 0 128 857 2 0 1416 1 0 434 0 1 577 0 1 164 0 4 258 1 5 764 1 0 50 0 1 213 0 1 364 0 1 141 chain 31069 chr6 170805979 + 62526 62898 L1PA7 6471 + 5732 6108 41073 354 0 4 18 chain 165763 chr6 170805979 + 64898 66693 L1PA2 6032 + 3187 4982 11349 1795 chain 23685 chr6 170805979 + 88275 88584 L1PA8A 6298 + 5870 6175 51298 129 9 9 126 4 0 41 chain 509979 chr6 170805979 + 96114 102539 L1PA7 6471 + 0 6468 2770 196 3 2 63 2 3 148 11 7 141 1 8 59 7 8 20 1 0 4 0 1 228 20 14 530 5 0 265 0 1 243 0 1 458 2 3 229 0 1 450 4 1 12 0 4 299 0 7 6 13 11 61 8 8 5 3 0 187 3 7 144 1 0 165 3 0 97 0 1 248 0 5 131 0 35 125 0 2 52 2 0 194 1 2 462 1 0 251 0 1 12 1 0 17 7 11 423 1 0 251 12 13 126 2 0 9 chain 7951 chr6 170805979 + 158867 158968 L1PA7 6471 + 3451 3549 74998 52 3 0 46 chain 230514 chr6 170805979 + 158972 162092 L1PA7 6471 + 3557 6377 8734 941 1 0 4 0 1 56 335 15 537 10 11 32 0 1 468 0 2 16 0 4 308 0 8 334 11 14 6 0 1 61 chain 47518 chr6 170805979 + 163199 164021 L1PB1 5432 + 4577 5395 30471 52 0 2 27 0 10 45 1 0 85 19 18 182 1 0 39 1 9 54 19 17 18 1 0 12 1 0 11 5 1 9 12 10 42 2 1 15 1 0 32 0 1 12 1 0 4 70 63 22 1 0 21 1 0 4 chain 27752 chr6 170805979 + 177804 178138 LTR12 884 + 544 884 45245 20 0 6 314 chain 5543 chr6 170805979 + 180074 180244 LTR12C 1709 + 928 1068 83060 35 11 55 35 74 0 15 chain 46135 chr6 170805979 + 187172 187799 LTR71B 605 + 0 604 30992 137 12 10 54 3 0 148 15 0 129 0 2 42 9 4 78 chain 4320 chr6 170805979 + 212258 212311 L1MB3 1562 + 991 1044 89361 53 chain 195717 chr6 170805979 + 242388 245142 L1MA3 4352 + 1632 4352 9854 21 1 0 116 0 2 11 0 1 256 2 1 273 1 0 204 5 0 70 1 0 461 0 1 26 11 16 53 0 1 171 0 1 20 0 1 43 1 0 15 8 7 14 0 1 277 9 10 7 5 0 378 52 29 62 8 12 42 4 0 22 8 6 19 1 0 6 1 0 27 21 16 21 chain 4090 chr6 170805979 + 245511 245561 LTR37A 408 + 313 363 90853 50 chain 15657 chr6 170805979 + 259599 259820 MER30 238 + 0 238 61458 106 13 24 22 1 7 79 chain 52510 chr6 170805979 + 267826 268395 L1PA3long 6157 + 5588 6157 28730 569 chain 19401 chr6 170805979 + 365362 365607 AluSp 311 + 60 305 57127 90 6 6 149 chain 2728 chr6 170805979 + 448216 448272 MLT1B 390 + 0 56 102132 13 1 2 10 7 6 25 chain 13934 chr6 170805979 + 450442 450616 LTR12C 1709 + 934 1108 63695 174 chain 4884 chr6 170805979 + 450616 450705 LTR12C 1709 + 789 837 74475 21 41 0 27 chain 35760 chr6 170805979 + 606022 606427 L1PA5 6144 + 5739 6144 37561 405 chain 386852 chr6 170805979 + 660362 665922 L1PB1 5432 + 19 5424 5376 17 25 22 11 25 19 15 0 1 55 0 13 7 13 1 27 3 4 121 0 1 73 1 0 67 2 1 239 11 16 6 0 1 89 0 3 49 0 5 152 8 4 126 0 4 73 8 12 129 0 2 10 90 80 312 0 1 653 13 7 44 10 5 29 132 0 179 0 1 30 2 0 5 0 2 100 1 0 36 8 11 46 0 4 68 0 1 478 0 5 240 6 1 27 17 10 151 0 9 491 0 1 52 0 5 7 18 13 10 0 4 202 1 0 303 0 2 39 0 2 43 1 2 9 3 0 24 1 0 9 20 15 5 2 0 53 2 1 16 1 0 43 1 0 16 3 0 17 9 0 13 10 6 14 2 0 24 1 0 13 0 1 7 1 0 13 1 0 16 1 0 4 chain 16452 chr6 170805979 + 695048 695326 LTR12C 1709 + 769 1037 60444 68 1 0 121 73 64 15 chain 13565 chr6 170805979 + 720971 721148 MER30 238 + 36 233 64226 57 0 6 9 3 17 108 chain 22368 chr6 170805979 + 816037 816322 AluSc 308 + 0 290 53315 46 13 18 226 chain 221856 chr6 170805979 + 849734 852752 L1PA7 6471 + 3809 6467 8985 190 33 9 34 0 1 482 0 1 439 326 0 128 16 8 415 0 1 107 1 0 36 0 2 348 8 1 141 0 1 314 chain 29522 chr6 170805979 + 850922 851238 AluYb8 318 + 0 313 42583 132 3 0 181 chain 174241 chr6 170805979 + 921346 924113 HUERS-P2-int 2744 + 2 2742 10886 15 4 1 12 7 1 16 3 6 32 11 8 51 2 1 18 3 0 8 23 19 28 138 103 6 1 0 70 0 1 35 1 0 8 1 0 22 1 0 5 1 0 21 0 2 216 54 1 36 7 5 47 7 9 62 0 1 37 5 26 46 7 12 62 0 1 59 0 6 55 0 33 77 0 7 642 3 0 317 44 74 20 1 0 22 1 3 73 1 0 69 7 5 30 4 0 37 2 1 9 1 0 7 6 4 14 1 0 39 3 0 34 1 0 9 2 0 5 2 0 12 2 0 27 chain 67069 chr6 170805979 + 1014884 1015769 L1PA8 5853 + 4979 5853 24690 30 0 2 83 1 0 425 4 6 39 1 0 41 7 5 69 1 0 6 8 0 55 2 1 19 1 0 93 chain 24200 chr6 170805979 + 1155629 1156006 THE1C 375 + 0 375 50498 55 1 0 70 3 0 161 6 8 21 29 0 9 4 33 18 chain 24780 chr6 170805979 + 1157993 1158294 MER4D0 881 + 580 881 49620 301 chain 14702 chr6 170805979 + 1159723 1159958 L1PA15 4387 + 3990 4207 62676 4 1 0 109 2 1 26 1 0 54 23 8 15 chain 25994 chr6 170805979 + 1161936 1162213 AluYa5 310 + 34 310 47724 259 1 0 17 chain 24306 chr6 170805979 + 1173912 1174204 L1PA7 6471 + 5188 5482 50322 142 6 7 90 0 1 54 chain 7514 chr6 170805979 + 1186520 1186618 U13_ 108 + 4 103 76093 34 1 2 63 chain 6712 chr6 170805979 + 1260664 1260758 Tigger1 2417 + 2240 2333 78607 8 0 3 18 4 0 64 chain 163981 chr6 170805979 + 1353254 1355425 L1PBa 3878 + 1142 3351 11483 188 0 21 263 3 0 5 19 33 173 0 1 756 0 3 128 0 1 40 4 8 270 0 1 7 6 4 4 0 1 135 6 8 15 18 13 131 chain 39884 chr6 170805979 + 1361800 1362268 L1PA5 6144 + 5676 6144 34750 311 0 1 138 1 0 18 chain 12132 chr6 170805979 + 1462156 1462513 LTR49-int 1717 + 1443 1686 66601 95 6 4 29 16 14 34 1 0 8 142 33 26 chain 42487 chr6 170805979 + 1475485 1476011 L1PA8 5853 + 5333 5853 33071 231 1 0 43 3 1 71 1 0 14 2 0 7 0 2 42 1 0 18 1 0 91 chain 3938 chr6 170805979 + 1486061 1486110 L1MC1 2226 + 1998 2047 91844 49 chain 3299 chr6 170805979 + 1499725 1499762 LTR41 747 + 668 705 97017 37 chain 176313 chr6 170805979 + 1675866 1677956 L1PA5 6144 + 3285 6144 10764 154 30 811 560 1 0 4 0 2 361 1 4 306 13 0 11 15 0 14 0 12 620 chain 341115 chr6 170805979 + 1750291 1754715 L1P3 4156 + 6 4139 6049 245 6 5 66 1 0 44 0 12 23 1 0 219 0 1 582 313 0 29 0 4 902 0 1 162 0 1 327 7 1 256 5 9 163 0 1 34 0 4 377 1 0 336 1 6 10 0 1 156 5 6 118 2 0 7 2 1 24 chain 321540 chr6 170805979 + 1979041 1983803 L1PA11 4918 + 14 4578 6373 19 10 16 22 3 1 7 3 0 34 1 0 15 8 8 44 1 0 33 2 0 3 1 0 43 0 12 12 4 0 7 9 0 8 3 14 28 6 1 798 0 3 266 7 1 20 0 1 42 41 39 31 3 1 15 0 1 144 0 12 98 1 2 68 6 0 16 0 1 279 46 50 5 0 1 6 2 0 19 3 7 237 0 1 12 6 19 177 1 0 8 1 0 192 1 0 4 0 1 22 0 1 43 0 1 20 244 32 112 0 1 180 0 7 323 1 0 36 5 4 613 0 4 78 1 0 11 3 0 68 2 0 6 11 12 16 4 0 9 8 3 15 8 4 15 1 0 13 2 0 11 chain 95678 chr6 170805979 + 2049726 2050869 L1P1 4361 + 2829 3973 18816 382 0 3 72 1 0 104 1 0 583 chain 19349 chr6 170805979 + 2050870 2051100 L1PA6 6164 + 5914 6147 57179 35 0 3 195 chain 490331 chr6 170805979 + 2064982 2070428 L1PA3long 6157 + 573 6157 3412 195 8 136 258 0 3 110 1 0 506 0 2 163 0 2 342 0 4 3863 chain 3756 chr6 170805979 + 2192204 2192243 MER52D 1964 + 1102 1141 93176 39 chain 521816 chr6 170805979 + 2286244 2292683 L1PA7 6471 + 0 6459 2191 75 0 1 56 0 14 94 0 8 154 6 1 487 0 1 450 0 1 4 1 0 1294 0 1 96 0 1 157 0 3 110 0 3 89 0 4 34 17 3 257 0 1 81 16 13 10 1 0 26 3 1 80 0 4 591 0 1 51 1 2 406 9 11 523 0 4 351 0 4 63 0 3 400 10 0 107 1 0 174 15 16 131 1 0 7 chain 113422 chr6 170805979 + 2292825 2295190 L1PB3 3668 + 1833 3566 16619 214 12 18 43 4 0 206 0 1 21 7 8 38 0 6 44 6 5 230 1 0 99 0 23 68 1 0 24 0 3 104 2 0 10 3 0 33 0 10 41 0 2 46 6 7 89 732 80 67 2 0 17 2 1 83 23 7 13 2 1 5 0 1 27 3 1 37 chain 19623 chr6 170805979 + 2297834 2298179 THE1C 375 + 0 333 56885 15 2 0 30 12 4 4 1 0 14 22 23 19 7 8 69 0 1 41 13 9 96 chain 267712 chr6 170805979 + 2299836 2303004 L1PA6 6164 + 2985 6150 7770 211 0 1 69 0 4 4 0 2 247 0 1 838 0 4 312 0 1 740 16 1 5 0 2 61 1 0 149 0 1 470 14 11 31 chain 339948 chr6 170805979 + 2303027 2307120 HERVL-int 5654 + 1563 5654 6071 167 7 11 329 23 22 988 0 3 225 0 1 161 1 0 163 11 0 736 1 0 158 1 0 1023 0 5 99 chain 28156 chr6 170805979 + 2307120 2307503 MLT2A1 477 + 0 381 44624 169 4 1 11 2 0 13 0 1 8 5 6 158 1 2 12 chain 21316 chr6 170805979 + 2335439 2335786 L1PB1 5432 + 4946 5281 54744 154 16 14 24 1 0 5 1 0 13 2 0 3 2 0 9 7 5 47 2 1 15 1 0 45 chain 33310 chr6 170805979 + 2612758 2613140 L1PA7 6471 + 6076 6461 39249 60 0 1 99 0 2 223 chain 4734 chr6 170805979 + 2628224 2628352 MER20 218 + 0 127 87057 14 18 17 35 13 16 7 1 0 16 6 4 18 chain 22331 chr6 170805979 + 2737050 2737303 AluSc 308 + 18 271 53365 253 chain 49388 chr6 170805979 + 2742340 2742873 L1PA3long 6157 + 5619 6152 29804 533 chain 120798 chr6 170805979 + 2859961 2861725 LTR12C 1709 + 0 1702 15377 104 5 4 178 0 4 19 0 1 4 1 0 498 0 40 259 1 0 6 2 0 107 0 4 63 161 53 16 12 14 63 17 0 7 13 29 125 11 10 22 33 35 22 0 1 5 1 0 9 chain 5938 chr6 170805979 + 2865811 2865923 LTR56 451 + 145 259 81323 19 30 28 15 0 4 48 chain 290631 chr6 170805979 + 2876884 2880988 L1PBa1 4058 + 10 4040 7109 20 34 30 117 0 2 86 0 1 165 3 1 81 21 21 28 7 6 47 17 16 116 1 2 319 0 1 91 48 0 30 0 1 253 23 16 89 1 0 50 5 32 36 2 0 460 1 2 16 0 1 315 21 11 174 0 6 8 6 10 207 18 3 47 0 1 55 3 1 398 1 8 44 7 6 53 1 0 60 4 0 112 1 0 7 1 0 22 8 7 26 17 15 47 1 0 61 3 1 17 2 1 9 11 5 9 2 0 22 2 1 4 1 0 4 3 0 21 1 0 9 2 1 13 1 0 5 1 0 9 1 0 16 2 1 42 chain 77630 chr6 170805979 + 2908662 2909630 LTR5_Hs 974 + 0 974 22175 168 1 0 117 0 1 181 0 1 349 0 6 7 0 1 34 8 6 103 chain 76512 chr6 170805979 + 2927490 2928533 MER11C 1089 + 0 1057 22433 247 0 9 61 0 4 65 1 0 149 67 64 91 1 5 4 1 0 38 0 1 127 0 1 54 1 0 117 0 1 19 chain 4717 chr6 170805979 + 2936368 2936600 LTR12C 1709 + 810 885 87158 27 1 0 7 158 2 39 chain 60484 chr6 170805979 + 2972238 2973176 L1PB1 5432 + 4476 5391 26238 37 1 0 108 0 2 28 0 3 50 1 3 104 8 0 52 5 14 226 14 12 23 1 0 9 1 0 9 4 3 8 2 0 53 2 1 16 8 7 37 1 0 15 1 0 4 3 0 10 1 0 4 29 17 15 2 0 24 1 0 21 chain 5036 chr6 170805979 + 3028147 3028366 LTR12E 1234 + 762 846 85487 47 42 1 18 96 2 16 chain 26929 chr6 170805979 + 3040615 3040912 AluYc 301 + 2 299 46360 297 chain 28858 chr6 170805979 + 3054799 3055151 LTR5_Hs 974 + 0 353 43541 161 0 1 5 1 0 118 0 1 67 chain 30817 chr6 170805979 + 3055162 3055508 HERVK-int 6823 + 4767 5113 41302 346 chain 103605 chr6 170805979 + 3170584 3171949 LTR12C 1709 + 0 1709 17863 431 0 2 217 0 278 144 0 2 38 1 0 5 3 1 41 0 2 63 0 4 114 0 29 24 1 0 13 3 7 19 3 6 7 1 0 51 8 6 39 11 36 10 12 14 106 chain 25913 chr6 170805979 + 3173445 3173851 LTR7 482 + 0 477 47842 69 6 95 16 51 0 44 5 37 46 0 1 169 chain 11676 chr6 170805979 + 3201419 3201717 Charlie1a 1436 + 1120 1432 67435 77 134 147 55 0 1 32 chain 12517 chr6 170805979 + 3215060 3215263 MER30 238 + 0 237 65954 13 16 33 53 13 30 108 chain 5456 chr6 170805979 + 3254099 3254164 LTR12C 1709 + 928 993 83424 65 chain 2797 chr6 170805979 + 3314403 3314543 MIR 256 + 63 208 101660 12 24 27 27 61 63 16 chain 4450 chr6 170805979 + 3335712 3335762 MADE1 96 + 46 96 88609 50 chain 3273 chr6 170805979 + 3338609 3338690 MER34A 573 + 490 568 97269 22 23 22 22 2 0 12 chain 45543 chr6 170805979 + 3339425 3339979 MER41A 554 + 0 554 31288 554 chain 8359 chr6 170805979 + 3462506 3462617 L1MC3 1789 + 1075 1185 73999 72 2 0 17 0 1 20 chain 28600 chr6 170805979 + 3468939 3469394 LTR7B 505 + 0 505 43950 93 4 35 26 1 2 52 23 44 155 0 1 4 17 16 13 14 13 26 2 0 25 chain 29563 chr6 170805979 + 3490329 3490822 MER1A 529 + 0 523 42532 29 54 55 142 3 19 45 0 15 77 3 0 61 23 24 56 chain 27942 chr6 170805979 + 3547518 3547938 LTR7B 505 + 1 495 44963 89 0 3 15 0 10 48 9 47 12 3 27 16 10 12 82 2 0 79 14 13 41 chain 2735 chr6 170805979 + 3608120 3608188 MER45R 1085 + 238 309 102081 23 25 28 20 chain 54704 chr6 170805979 + 3613447 3614118 L1PA8 5853 + 5184 5853 27973 353 0 5 22 1 0 46 2 0 69 1 0 17 1 0 44 2 1 19 1 0 93 chain 17878 chr6 170805979 + 3758586 3758865 LTR12C 1709 + 769 1037 58791 68 1 0 74 51 0 58 0 41 27 chain 3598 chr6 170805979 + 3768693 3768735 MADE1 96 + 1 44 94439 37 0 1 5 chain 14132 chr6 170805979 + 3772066 3772239 LTR12C 1709 + 935 1108 63403 173 chain 2971 chr6 170805979 + 3772267 3772335 LTR12C 1709 + 1018 1086 67305 68 chain 5660 chr6 170805979 + 3784442 3784514 MER58B 340 + 261 334 82513 23 0 1 49 chain 4971 chr6 170805979 + 3852561 3852678 MER5A1 166 + 24 134 85797 15 6 9 17 13 1 37 14 16 15 chain 4316 chr6 170805979 + 3858131 3858183 MLT1F 544 + 326 379 89388 23 0 1 29 chain 59483 chr6 170805979 + 3907235 3907992 MER4E 760 + 0 760 26514 17 1 0 134 22 25 51 0 1 36 0 1 4 1 0 261 2 0 21 1 0 113 0 1 69 0 2 24 chain 44031 chr6 170805979 + 3916714 3917228 MER9a3 513 + 0 513 32110 494 1 0 19 chain 51477 chr6 170805979 + 3973017 3974038 MER4E1 777 + 0 769 29058 92 0 1 15 2 0 9 2 0 155 322 64 92 5 7 45 0 1 54 13 15 146 4 6 51 0 2 14 chain 7304 chr6 170805979 + 3997945 3998047 LTR24C 604 + 0 108 76655 38 1 6 44 0 1 19 chain 3340 chr6 170805979 + 4076387 4076443 U13_ 108 + 0 57 96682 17 6 7 33 chain 14301 chr6 170805979 + 4090578 4090831 LTR12C 1709 + 674 1086 63198 29 41 0 109 16 216 58 chain 82656 chr6 170805979 + 4195851 4197091 HSMAR2 1300 + 16 1300 21093 252 19 18 59 0 2 42 20 59 72 2 1 115 45 47 79 0 1 69 8 9 231 4 7 146 15 18 9 4 0 16 4 3 29 chain 21880 chr6 170805979 + 4222229 4222591 THE1B 368 + 0 368 54001 105 11 12 60 61 66 125 chain 117574 chr6 170805979 + 4222591 4224167 THE1B-int 1605 + 0 1605 15960 12 3 0 418 0 25 10 0 2 180 49 17 9 0 32 566 18 5 35 0 16 24 0 1 212 0 1 40 chain 8096 chr6 170805979 + 4224169 4224272 THE1B 368 + 2 105 74647 103 chain 43332 chr6 170805979 + 4224390 4224961 LTR76 689 + 8 575 32543 27 0 1 13 1 0 130 1 0 210 3 1 4 1 0 81 0 6 33 6 0 61 chain 120437 chr6 170805979 + 4224972 4226581 L1P2 5180 + 2 1625 15456 143 51 49 50 1 0 114 0 1 87 23 16 53 0 8 42 1 0 220 1 16 607 0 1 216 chain 484225 chr6 170805979 + 4228902 4235110 L1PA6 6164 + 14 6159 3548 343 34 7 86 41 21 23 1 2 70 22 0 3 54 0 148 7 9 17 22 1 43 0 17 211 4 1 436 1 0 88 0 1 660 0 25 102 1 0 254 0 4 182 1 2 8 4 0 411 1 2 49 20 33 427 0 4 664 0 4 700 0 2 258 1 3 497 1 0 265 0 14 48 chain 40207 chr6 170805979 + 4260602 4261170 MER4E 760 + 0 760 34516 24 2 1 125 41 45 174 1 3 9 2 188 161 1 0 17 0 1 4 0 1 7 chain 34681 chr6 170805979 + 4357950 4358328 L1PA3long 6157 + 5779 6157 38231 378 chain 25346 chr6 170805979 + 4393351 4393671 L1PA8 5853 + 5539 5853 48715 25 1 0 46 2 0 78 1 0 52 2 1 19 1 0 93 chain 484090 chr6 170805979 + 4405453 4412143 L1PA8A 6298 + 40 6291 3551 16 34 21 17 11 9 16 18 11 19 1 0 8 2 1 15 1 0 4 1 0 9 3 1 15 9 6 12 4 3 6 1 0 9 1 0 6 1 0 6 16 11 5 2 0 11 0 1 19 12 11 20 8 0 80 2 0 18 1 0 76 1 0 9 1 0 182 30 23 92 4 0 311 0 6 73 5 7 25 6 5 32 0 2 959 2 1 159 0 3 79 39 12 12 0 1 6 0 1 260 0 3 166 63 0 422 1 2 6 1 0 336 8 0 7 0 1 166 0 1 554 0 1 255 2 4 139 1 0 149 0 2 513 1 4 51 300 0 19 0 1 142 0 1 284 13 10 182 0 1 107 chain 47272 chr6 170805979 + 4413992 4414656 LTR12F 595 + 0 595 30550 106 0 1 38 2 0 32 0 8 25 82 5 270 0 1 109 chain 11343 chr6 170805979 + 4427962 4428082 5S 121 + 0 120 68013 120 chain 44778 chr6 170805979 + 4471247 4471781 LTR10A 586 + 0 565 31713 74 0 1 135 0 30 325 chain 3278 chr6 170805979 + 4512982 4513093 Kanga1b 635 + 457 566 97207 4 1 0 29 46 42 15 1 4 15 chain 31425 chr6 170805979 + 4519451 4519879 L1PA8 5853 + 5427 5845 40795 137 1 0 44 2 0 8 5 6 54 2 4 10 1 0 50 2 1 18 2 1 25 7 0 60 chain 10533 chr6 170805979 + 4527980 4528115 L1M1 2793 + 2523 2658 69355 79 0 1 25 1 0 30 chain 54642 chr6 170805979 + 4533559 4534296 L1PB3 3668 + 2710 3474 27995 176 0 2 100 8 6 5 2 0 56 2 1 28 0 32 174 1 0 101 1 0 83 chain 92662 chr6 170805979 + 4572757 4573770 L1PA3long 6157 + 5144 6154 19245 115 3 0 895 chain 28955 chr6 170805979 + 4580020 4580336 AluYb8 318 + 0 314 43398 132 2 0 182 chain 4200 chr6 170805979 + 4643761 4643818 U13_ 108 + 1 59 90118 21 1 2 35 chain 24346 chr6 170805979 + 4678555 4678935 THE1D 372 + 0 372 50253 13 1 0 8 6 9 23 22 10 97 0 1 21 10 12 146 1 0 32 chain 3275 chr6 170805979 + 4808580 4808615 MER58A 224 + 47 82 97231 35 chain 5693 chr6 170805979 + 4819730 4819844 MER20 218 + 36 140 82376 30 26 19 5 3 0 50 chain 43699 chr6 170805979 + 4864950 4865524 LTR10A 586 + 11 556 32324 255 36 7 283 chain 3002 chr6 170805979 + 4960336 4960368 L1MB7 1623 + 1384 1416 99815 32 chain 3266 chr6 170805979 + 4997674 4997712 MLT2B3 573 + 535 573 97329 38 chain 28032 chr6 170805979 + 5003066 5003367 AluYg6 310 + 0 301 44812 301 chain 24177 chr6 170805979 + 5187480 5187758 L1PA6 6164 + 5882 6159 50527 94 1 0 183 chain 47922 chr6 170805979 + 5227496 5228140 L1PA8 5853 + 5215 5853 30321 60 20 11 184 0 1 93 1 0 46 2 0 69 12 10 53 2 1 17 1 0 53 0 9 31 chain 34816 chr6 170805979 + 5323745 5324215 LTR19A 502 + 0 502 38144 34 4 3 137 4 3 44 0 36 38 7 6 39 1 0 162 chain 10558 chr6 170805979 + 5352085 5352251 MER30 238 + 62 238 69311 32 4 17 10 4 0 12 2 0 64 1 4 37 chain 30372 chr6 170805979 + 5576152 5576682 MLT2A1 477 + 2 477 41698 167 4 1 25 2 0 115 4 5 56 0 1 13 108 52 30 0 4 6 chain 17463 chr6 170805979 + 5805313 5805580 THE1D 372 + 103 371 59284 63 32 34 25 2 1 145 chain 13053 chr6 170805979 + 5825479 5825680 MER47A 366 + 67 271 65020 17 10 11 110 16 18 48 chain 3461 chr6 170805979 + 5922901 5922940 U5 65 + 5 44 95535 39 chain 14118 chr6 170805979 + 5968307 5968462 L1PA6 6164 + 6007 6161 63425 145 1 0 9 chain 4030 chr6 170805979 + 5968595 5968665 MER5B 177 + 19 86 91244 22 16 13 32 chain 3324 chr6 170805979 + 5975285 5975322 MER83 447 + 0 37 96815 37 chain 545178 chr6 170805979 + 6211666 6217683 L1PA3long 6157 + 0 6152 1024 152 0 1 628 0 128 945 0 1 2230 0 1 268 0 4 1794 chain 3754 chr6 170805979 + 6265940 6265985 MADE1 96 + 2 47 93209 45 chain 41735 chr6 170805979 + 6272611 6273141 MER41D 557 + 19 549 33529 530 chain 22602 chr6 170805979 + 6277122 6277364 AluYa5 310 + 69 310 52986 54 1 0 187 chain 27801 chr6 170805979 + 6294135 6294498 MLT2A1 477 + 0 385 45182 17 0 4 39 1 15 67 0 1 25 1 5 201 1 0 11 chain 17633 chr6 170805979 + 6363418 6363660 MER75B 242 + 0 238 59087 17 1 2 169 0 1 30 6 0 19 chain 351321 chr6 170805979 + 6371302 6376185 L1PB1 5432 + 502 5369 5897 22 54 56 185 3 0 6 0 3 367 1 0 192 14 24 7 0 1 40 2 5 256 0 2 367 1 2 464 1 0 43 0 2 270 6 0 24 1 2 38 0 1 405 1 0 4 0 1 97 0 1 223 3 1 103 5 7 269 1 0 435 11 21 95 0 1 20 10 13 51 0 1 351 1 2 77 7 6 38 1 2 7 18 0 17 17 15 13 6 2 9 2 0 52 2 1 14 2 1 45 41 27 19 8 5 14 2 0 23 chain 306677 chr6 170805979 + 6426599 6430040 L1PA5 6144 + 2504 5957 6682 406 4 0 266 1 0 268 0 17 215 2 0 1845 0 2 434 chain 65325 chr6 170805979 + 6442682 6443399 L1PA3long 6157 + 5423 6140 25100 717 chain 29398 chr6 170805979 + 6459942 6460480 L1PB1 5432 + 4906 5420 42742 108 4 6 83 13 11 20 1 0 10 18 13 10 2 0 53 2 1 15 5 4 41 1 0 15 1 0 4 13 9 18 3 1 4 1 0 11 6 4 23 1 0 21 1 0 13 1 0 16 chain 30108 chr6 170805979 + 6462717 6463102 MER41B 635 + 165 549 41936 291 13 12 81 chain 20502 chr6 170805979 + 6463592 6463918 THE1D 372 + 1 332 55784 12 0 2 17 1 0 36 27 29 73 3 4 10 7 9 62 1 0 77 chain 5085 chr6 170805979 + 6473048 6473137 MADE1 96 - 0 94 85224 39 4 20 24 11 0 11 chain 58613 chr6 170805979 + 6477681 6478452 MER4E1 777 + 0 777 26784 184 0 1 44 4 5 92 3 1 101 0 1 113 12 17 17 7 6 13 0 1 181 chain 9658 chr6 170805979 + 6521616 6521740 L1MB2 1706 + 1374 1498 71143 124 chain 10634 chr6 170805979 + 6523495 6523629 L1PA5 6144 + 6012 6144 69159 120 3 1 11 chain 3306 chr6 170805979 + 6566659 6566696 MER3 215 + 66 103 96957 37 chain 23573 chr6 170805979 + 6638905 6639160 L1PA3long 6157 + 5626 5881 51472 255 chain 398478 chr6 170805979 + 6668160 6672945 L1P2 5180 + 2 4785 5175 137 13 12 43 2 1 52 1 0 71 1 2 88 24 16 91 1 0 224 20 19 26 2 17 17 27 10 617 0 1 313 0 1 123 0 1 323 0 2 54 12 14 47 1 0 847 2 0 242 0 1 100 2 1 79 0 2 597 0 4 153 0 2 433 chain 3768 chr6 170805979 + 6755635 6755694 MER33 330 + 232 286 93077 10 7 0 5 0 2 37 chain 69276 chr6 170805979 + 6777783 6778553 L1PA4 6152 + 5382 6151 24164 516 1 0 253 chain 7196 chr6 170805979 + 6864265 6864444 MLT1A0 366 + 62 233 76955 82 1 0 4 74 67 18 chain 67133 chr6 170805979 + 6877555 6878318 L1PA6 6164 + 5397 6160 24669 763 chain 18079 chr6 170805979 + 6940556 6940786 LTR12C 1709 + 768 1037 58580 7 1 0 8 1 0 34 0 1 19 1 0 139 0 41 20 chain 5746 chr6 170805979 + 6952905 6953078 LTR12C 1709 + 897 1195 82145 48 24 106 17 7 91 17 41 0 19 chain 1420 chr6 170805979 + 6953018 6953053 LTR12C 1709 + 691 726 87455 35 chain 3351 chr6 170805979 + 6968351 6968394 MER5A 189 + 2 46 96583 13 0 1 30 chain 388561 chr6 170805979 + 7026866 7031490 L1PA6 6164 + 0 6162 5338 63 2 3 350 0 1 47 2 1 102 1 0 63 1 2 111 1 2 42 0 17 102 0 4 61 3 4 63 0 2 101 6 18 1166 0 1 238 5 0 702 0 1 7 0 1500 564 0 1 212 0 3 405 0 1 52 1 0 4 2 3 137 2 0 6 chain 3493 chr6 170805979 + 7081998 7082042 Charlie1b 519 + 471 514 95306 18 1 0 25 chain 2797 chr6 170805979 + 7254421 7254454 MER5A1 166 + 33 67 101666 12 0 1 21 chain 25184 chr6 170805979 + 7309507 7309862 THE1C 375 + 6 364 48980 53 9 11 64 1 5 29 1 0 16 1 0 165 1 0 15 chain 15987 chr6 170805979 + 7315643 7316159 LTR12C 1709 + 769 1645 61040 48 0 40 75 50 0 54 177 518 37 49 78 26 chain 4814 chr6 170805979 + 7322513 7322567 MLT1A1 405 + 335 389 86630 54 chain 93611 chr6 170805979 + 7344035 7345458 LTR12C 1709 + 0 1688 19094 300 0 1 191 0 1 157 0 278 184 1 0 5 3 1 106 0 4 69 15 29 15 4 6 13 145 112 29 37 36 18 17 15 105 0 4 9 chain 411040 chr6 170805979 + 7348157 7354076 L1PB1 5432 + 33 5420 5014 50 26 28 197 1 8 90 1 2 199 0 6 190 0 1 77 0 1 199 0 1 318 5 0 139 335 0 191 0 3 137 4 1 627 3 0 5 0 1 60 43 3 18 0 2 412 9 8 16 89 7 334 1 0 372 22 13 636 1 0 90 0 4 149 1 2 250 11 5 125 4 0 6 20 24 6 0 1 5 1 0 62 49 0 20 1 0 12 1 0 10 6 2 11 3 1 50 2 1 16 1 0 42 2 1 16 3 0 7 14 5 16 27 22 24 1 0 23 0 3 8 1 0 16 chain 84912 chr6 170805979 + 7425609 7427141 LTR12C 1709 + 0 1692 20637 24 30 39 275 14 57 65 23 25 200 55 14 56 0 2 80 1 0 218 16 63 90 23 0 16 11 4 53 42 40 20 127 127 22 12 11 25 17 149 17 chain 4192 chr6 170805979 + 7426240 7426295 LTR12C 1709 + 804 858 44672 33 1 0 21 chain 3403 chr6 170805979 + 7441685 7441726 LTR12C 1709 + 769 810 82588 41 chain 949 chr6 170805979 + 7441726 7441754 LTR12C 1709 + 969 997 66805 28 chain 21913 chr6 170805979 + 7441754 7442029 LTR12C 1709 + 837 1112 53957 275 chain 2624 chr6 170805979 + 7442114 7442144 LTR12C 1709 + 677 707 102867 30 chain 1465 chr6 170805979 + 7456787 7456826 LTR12C 1709 + 928 968 73012 35 0 1 4 chain 14787 chr6 170805979 + 7456827 7457326 LTR12C 1709 + 809 1037 62545 28 118 0 48 43 6 12 41 0 89 0 2 19 77 0 24 chain 3004 chr6 170805979 + 7456876 7456957 LTR12C 1709 + 978 1022 90450 26 51 14 4 chain 9012 chr6 170805979 + 7497069 7497263 Tigger4b 360 + 29 232 72531 11 7 0 17 29 31 12 20 31 33 0 3 65 chain 3611 chr6 170805979 + 7506724 7506789 L1MB3 1562 + 1012 1076 94332 32 12 11 21 chain 10049 chr6 170805979 + 7605730 7605858 MER85 139 + 1 139 70303 88 0 10 40 chain 11810 chr6 170805979 + 7630183 7630330 MLT1A0 366 + 17 164 67186 147 chain 52263 chr6 170805979 + 7663537 7664368 L1PA16 3655 + 2797 3561 28796 107 1 0 11 1 0 69 2 1 5 0 1 4 0 3 120 12 11 42 2 0 33 59 14 67 8 6 34 0 2 88 19 0 57 6 5 84 chain 6813 chr6 170805979 + 7708730 7708810 MER30 238 + 156 238 78267 36 0 2 44 chain 14057 chr6 170805979 + 7814767 7814983 L1PA8 5853 + 5638 5853 63507 41 1 0 13 6 10 6 2 0 32 2 1 15 6 5 92 chain 32449 chr6 170805979 + 7817363 7817734 L1PA5 6144 + 5772 6144 39990 96 0 1 275 chain 11855 chr6 170805979 + 7837507 7837747 L1PB1 5432 + 5169 5391 67103 50 1 0 17 1 0 32 0 1 11 1 0 16 1 0 4 38 27 4 1 0 15 2 0 23 6 5 17 chain 25255 chr6 170805979 + 7892516 7892869 THE1B 368 + 0 368 48861 44 10 25 103 2 1 23 1 3 91 3 0 58 0 2 18 chain 516377 chr6 170805979 + 7925714 7931829 L1PA6 6164 + 13 6162 2452 164 1 2 57 0 2 138 0 1 76 25 12 53 0 2 47 1 0 50 0 1 91 2 0 78 0 17 42 1 16 209 1 2 238 0 3 125 0 1 511 0 1 373 14 0 114 5 7 221 0 1 528 0 1 616 1 2 437 0 13 97 0 4 1032 0 1 594 15 14 145 3 0 10 chain 5870 chr6 170805979 + 7949304 7949374 THE1B 368 + 297 368 81598 50 0 1 20 chain 188952 chr6 170805979 + 8032459 8034619 L1PA6 6164 + 3985 6149 10165 1965 0 1 104 0 3 91 chain 33778 chr6 170805979 + 8034624 8035312 L1PB1 5432 + 4810 5422 38866 7 11 0 286 1 2 9 55 0 24 1 0 8 1 0 12 5 1 9 7 5 47 3 1 9 7 6 22 27 26 12 3 0 8 16 7 15 3 1 5 1 0 7 0 18 13 1 0 23 13 11 4 0 1 13 chain 27400 chr6 170805979 + 8043772 8044439 THE1A 353 + 0 353 45704 110 1 0 39 0 8 62 1 0 10 320 0 124 chain 126247 chr6 170805979 + 8044439 8046017 THE1A-int 1579 + 0 1579 14515 478 18 18 167 0 1 165 1 2 650 1 0 98 chain 28219 chr6 170805979 + 8046019 8046372 THE1A 353 + 2 353 44539 277 2 0 74 chain 75751 chr6 170805979 + 8051206 8053034 Tigger1 2417 + 621 1861 22644 182 14 9 74 21 37 27 0 1 85 0 3 217 0 8 81 0 9 11 391 79 33 4 9 172 29 29 51 314 0 32 7 8 83 chain 3131 chr6 170805979 + 8092399 8092435 Tigger2 2703 + 2413 2449 98540 36 chain 4351 chr6 170805979 + 8126053 8126138 L1PA17 2846 + 2610 2693 89167 13 21 20 7 1 0 43 chain 95715 chr6 170805979 + 8164155 8165363 LTR12C 1709 + 0 1631 18808 286 0 4 420 0 200 16 0 55 131 1 0 5 3 1 106 0 4 53 0 1 62 0 30 65 0 101 11 15 49 10 6 3 18 chain 14801 chr6 170805979 + 8199514 8199834 L1MA8 2339 + 1878 2186 62531 16 32 31 9 2 0 22 2 0 53 2 1 75 10 11 10 0 3 6 11 4 32 12 9 26 chain 70427 chr6 170805979 + 8216669 8217422 L1PA2 6032 + 5279 6032 23886 753 chain 31984 chr6 170805979 + 8224019 8224583 MLT2A1 477 + 9 477 40355 159 1 5 70 117 1 148 24 40 45 chain 16466 chr6 170805979 + 8276401 8276692 L1PB4 2604 + 2217 2541 60421 15 29 30 78 30 62 139 chain 4799 chr6 170805979 + 8283059 8283168 LTR12D 1347 + 608 751 86707 44 41 75 24 chain 111560 chr6 170805979 + 8345568 8347171 THE1C-int 1605 + 27 1597 16870 83 0 54 275 32 0 6 49 7 115 1 4 437 8 9 199 1 2 82 5 6 4 1 0 41 24 25 151 0 1 20 20 0 49 chain 24524 chr6 170805979 + 8348161 8348470 L1PA6 6164 + 5855 6161 49990 148 15 15 134 3 0 9 chain 102453 chr6 170805979 + 8355233 8356454 L1PA6 6164 + 4881 6161 18016 106 0 21 227 0 11 72 0 4 504 0 1 52 8 25 155 0 11 80 6 0 11 chain 7087 chr6 170805979 + 8387784 8387868 MER84 505 + 0 84 77305 84 chain 27262 chr6 170805979 + 8426339 8426692 THE1A 353 + 0 351 45876 14 2 0 33 0 1 48 1 0 255 chain 156721 chr6 170805979 + 8521254 8523351 L1PA8A 6298 + 3952 6291 11956 173 59 206 16 0 4 443 0 87 259 1 6 337 0 1 4 4 2 17 1 2 61 0 2 14 2 0 10 12 5 18 1 0 49 7 6 284 7 16 27 2 1 4 0 1 151 12 12 21 1 0 100 chain 174886 chr6 170805979 + 8586005 8588283 L1P2 5180 + 1491 3780 10842 291 4 5 531 5 1 4 1 0 117 0 1 134 0 4 596 7 8 25 3 1 23 16 20 83 11 10 350 31 39 46 chain 7085 chr6 170805979 + 8644449 8644689 LTR12D 1347 + 460 652 77312 36 25 0 19 116 93 44 chain 139777 chr6 170805979 + 8665530 8667612 LTR12C 1709 + 0 1709 13114 211 260 4 52 1 0 42 0 1 4 1 0 150 0 1 372 1 0 83 117 0 191 1 0 5 3 1 107 0 4 285 1 0 82 11 13 90 1 0 11 chain 23271 chr6 170805979 + 8665741 8666000 LTR12C 1709 - 1107 1367 50408 137 0 1 122 chain 5961 chr6 170805979 + 8666707 8666783 LTR12C 1709 + 1080 1203 51809 15 21 68 40 chain 2915 chr6 170805979 + 8666783 8666818 LTR12C 1709 + 718 753 73498 35 chain 106966 chr6 170805979 + 8692006 8693494 THE1C-int 1605 + 18 1593 17439 61 17 20 17 0 51 278 10 17 33 8 7 252 17 11 364 3 4 179 3 13 95 0 2 41 13 33 97 chain 50471 chr6 170805979 + 8812692 8813243 L1PA5 6144 + 5581 6132 29388 551 chain 106978 chr6 170805979 + 8886985 8888269 LTR12C 1709 + 0 1709 17437 281 5 6 177 0 1 327 1 319 6 2 0 79 0 1 27 0 4 168 0 102 211 chain 86525 chr6 170805979 + 8919748 8920754 L1PA7 6471 + 5455 6459 20320 165 2 1 89 2 1 748 chain 12483 chr6 170805979 + 8942316 8942524 L1PB4 2604 + 2386 2567 66012 101 32 6 59 1 0 15 chain 41888 chr6 170805979 + 8962565 8963020 L1PA2 6032 + 4736 5191 33431 455 chain 46680 chr6 170805979 + 9010899 9011715 L1PB1 5432 + 4684 5424 30780 113 19 18 231 0 1 5 1 0 47 59 15 24 1 0 9 16 11 9 2 0 46 10 9 15 1 0 43 1 0 16 1 0 8 1 0 7 9 0 9 16 13 13 2 0 26 1 0 19 1 0 13 1 0 16 1 0 4 chain 113201 chr6 170805979 + 9024096 9025677 LTR12C 1709 + 0 1709 16650 284 0 12 57 0 1 48 1 0 307 0 159 244 1 0 4 10 12 96 0 4 53 0 1 48 41 44 12 1 0 46 30 29 49 5 7 69 51 0 26 28 28 17 9 8 44 chain 25555 chr6 170805979 + 9030426 9030777 THE1B 368 + 0 368 48391 40 0 15 53 2 3 58 1 0 26 12 14 159 chain 21551 chr6 170805979 + 9041225 9041503 LTR12C 1709 + 719 1037 54435 118 1 0 139 0 41 20 chain 2995 chr6 170805979 + 9110652 9110699 L1ME3A 1206 + 783 828 99887 22 2 0 23 chain 28620 chr6 170805979 + 9145489 9145867 MLT2A1 477 + 0 385 43918 48 0 2 64 1 0 6 0 1 17 0 1 23 7 11 212 chain 465695 chr6 170805979 + 9146772 9152431 HERVL-int 5654 + 1 5654 3971 467 0 1 135 0 1 131 0 1 301 0 2 428 44 9 357 20 21 51 0 1 210 0 8 766 10 8 648 0 1 204 0 3 298 0 1 8 4 0 47 3 1 1171 0 7 147 0 5 110 0 5 99 chain 32410 chr6 170805979 + 9152434 9153053 MLT2A1 477 + 3 477 40034 43 0 2 70 1 2 17 0 1 29 3 7 209 0 2 12 169 18 22 4 0 40 chain 3007 chr6 170805979 + 9152851 9152888 HERVL-int 5654 + 5459 5495 99779 32 1 0 4 chain 68343 chr6 170805979 + 9160257 9161044 L1PA7 6471 + 5663 6460 24372 521 0 9 122 0 1 144 chain 43654 chr6 170805979 + 9184687 9185194 MER9a3 513 + 0 513 32349 482 6 12 19 chain 514847 chr6 170805979 + 9213495 9220610 L1PA6 6164 + 4 6161 2526 450 0 4 59 0 2 48 1 0 60 24 25 135 0 17 277 0 5 170 2 0 945 0 1 124 0 11 538 673 2 261 319 0 16 0 3 28 1 0 79 0 5 64 0 10 72 0 1 1065 0 1 146 26 0 1262 0 1 270 chain 117975 chr6 170805979 + 9326612 9327915 L1PA4 6152 + 4672 5975 15891 1303 chain 11057 chr6 170805979 + 9436726 9436885 L1PA8 5853 + 5696 5853 68476 44 3 2 17 3 2 92 chain 534948 chr6 170805979 + 9443747 9449876 L1PA5 6144 + 3 6142 1622 838 0 1 710 1 3 13 0 3 1206 0 2 391 1 0 435 8 7 1344 0 4 334 1 0 516 0 1 331 chain 29902 chr6 170805979 + 9460159 9460484 AluYb8 318 + 0 318 42132 118 7 0 200 chain 42984 chr6 170805979 + 9504681 9505236 MER41A 554 + 0 554 32783 171 1 0 222 4 1 36 1 2 18 0 2 102 chain 73533 chr6 170805979 + 9512717 9513547 L1PA5 6144 + 4942 5772 23213 830 chain 164819 chr6 170805979 + 9549765 9551824 HERVL-int 5654 + 3062 5068 11425 330 53 0 774 1 0 334 4 5 228 1 0 24 1 7 8 6 0 288 0 1 7 chain 61516 chr6 170805979 + 9572212 9572934 L1PA6 6164 + 5442 6162 25981 705 1 0 5 1 0 10 chain 22545 chr6 170805979 + 9664794 9665153 THE1D 372 + 24 372 53050 27 18 0 18 9 10 87 26 29 30 1 0 82 0 1 33 0 3 28 chain 58345 chr6 170805979 + 9668158 9668906 LTR12 884 + 4 882 26851 70 0 132 172 2 0 17 1 0 53 3 0 7 10 13 360 0 1 53 chain 384560 chr6 170805979 + 9683582 9687798 L1PA3long 6157 + 1941 6157 5404 877 0 1 79 1 0 3259 chain 123343 chr6 170805979 + 9694003 9695507 L1PA8A 6298 + 3624 5138 14975 206 0 1 40 1 0 107 12 13 49 7 12 397 0 3 107 7 8 571 chain 60001 chr6 170805979 + 9721960 9722688 LTR12 884 + 0 884 26372 119 0 157 101 2 0 125 0 1 381 chain 250876 chr6 170805979 + 9722716 9725910 HERV9-int 5642 + 0 4824 8203 186 0 1 415 0 1 120 9 0 65 1 0 251 160 0 67 3 0 83 0 3 52 1 0 167 0 3 84 0 1 1341 0 1795 189 chain 4695 chr6 170805979 + 9723851 9723907 HERV9-int 5642 + 1047 1103 87295 56 chain 52646 chr6 170805979 + 9727616 9728411 LTR12 884 + 32 884 28686 77 1 2 44 10 142 81 11 33 229 98 0 244 chain 54539 chr6 170805979 + 9748364 9748985 L1PA7 6471 + 5848 6469 28031 621 chain 541322 chr6 170805979 + 9810752 9816774 L1PA3long 6157 + 0 6157 1251 152 7 8 95 0 1 301 0 1 219 1 129 101 0 1 2207 2 0 2095 0 4 417 0 1 425 chain 3067 chr6 170805979 + 9860953 9860998 L1MCc 1008 + 512 557 99110 6 0 2 6 2 0 31 chain 15395 chr6 170805979 + 9868892 9869072 L1PA8 5853 + 4555 4735 61788 180 chain 195125 chr6 170805979 + 9871177 9873416 L1PA5 6144 + 3885 6144 9881 308 0 6 878 4 4 351 2 18 441 1 0 235 1 0 18 chain 539084 chr6 170805979 + 9882323 9888447 L1PA5 6144 + 3 6144 1395 1491 1 0 322 2 1 410 0 1 78 2 0 890 1 2 288 0 4 185 1 5 52 0 1 4 1 0 1560 0 6 60 5 11 517 1 0 253 chain 118827 chr6 170805979 + 9928365 9930040 L1PA13 3608 + 1848 3497 15739 171 11 14 109 0 10 156 11 0 27 12 2 17 1 0 62 7 6 345 3 5 227 7 6 77 1 0 47 10 4 19 1 0 8 7 6 106 2 0 62 1 0 55 1 0 7 2 0 48 8 4 20 1 0 20 0 3 6 chain 10942 chr6 170805979 + 9942676 9942889 LTR12C 1709 + 784 1037 68630 53 1 0 75 66 107 18 chain 71142 chr6 170805979 + 9962842 9963663 L1PA5 6144 + 5312 6139 23731 404 0 4 110 0 1 73 0 1 234 chain 9270 chr6 170805979 + 10002334 10002462 L1PREC2 3366 + 2717 2844 71980 35 2 0 40 0 2 13 1 0 37 chain 31373 chr6 170805979 + 10040248 10040675 LTR12F 595 + 0 595 40833 25 0 1 54 0 167 117 0 1 27 23 22 181 chain 52723 chr6 170805979 + 10133964 10134589 L1P1 4361 + 1 629 28660 255 0 1 167 0 3 147 1 0 55 chain 59405 chr6 170805979 + 10134589 10135258 L1PA4 6152 + 5481 6151 26535 319 0 1 350 chain 98370 chr6 170805979 + 10171517 10173007 LTR12C 1709 + 0 1709 18501 19 24 0 266 30 29 246 29 0 19 1 0 71 0 278 184 1 0 4 4 2 106 0 4 112 6 1 55 0 102 43 122 20 18 53 53 77 chain 38417 chr6 170805979 + 10186927 10187432 L1PA8 5853 + 5341 5853 35776 223 1 0 44 2 0 72 1 0 8 0 4 48 2 1 19 1 9 84 chain 160151 chr6 170805979 + 10228540 10230300 L1PA3long 6157 + 4396 6157 11745 987 0 1 773 chain 46777 chr6 170805979 + 10230622 10231415 L1PB2 3958 + 3039 3838 30738 78 3 0 87 0 6 29 0 1 17 3 1 42 2 0 5 21 19 39 1 0 11 5 0 62 2 0 16 2 0 5 41 64 24 1 0 71 2 1 20 10 11 24 15 14 67 2 0 22 1 0 63 chain 113990 chr6 170805979 + 10337228 10338615 LTR12C 1709 + 0 1706 16552 104 5 4 684 1 319 6 2 0 107 0 4 478 chain 8272 chr6 170805979 + 10491856 10491957 LTR12D 1347 + 594 693 74233 52 2 0 47 chain 3238 chr6 170805979 + 10491991 10492045 LTR12D 1347 + 499 584 97591 31 6 37 17 chain 23981 chr6 170805979 + 10519671 10519974 AluSp 311 + 11 311 50820 121 2 0 44 0 1 119 2 0 15 chain 22781 chr6 170805979 + 10544329 10544608 AluSg7 307 + 7 285 52701 116 4 3 159 chain 38639 chr6 170805979 + 10575555 10576054 LTR7 482 + 0 482 35615 117 1 0 63 48 0 50 0 31 104 1 2 115 chain 4068 chr6 170805979 + 10598032 10598084 MIR3 191 + 79 130 90953 39 1 0 12 chain 8229 chr6 170805979 + 10628591 10628711 MLT1A 405 + 18 142 74325 56 0 1 15 10 13 39 chain 24681 chr6 170805979 + 10660488 10660864 LTR12C 1709 + 662 1037 49762 38 41 0 137 1 0 112 7 48 40 chain 8728 chr6 170805979 + 10662313 10662478 MER41B 635 + 11 170 73155 43 9 12 62 12 1 16 10 12 13 chain 9768 chr6 170805979 + 10687280 10687394 L1PA7 6471 + 6347 6470 70891 102 0 9 12 chain 12656 chr6 170805979 + 10692947 10693118 LTR10E 629 + 1 233 65712 17 1 0 111 0 2 20 6 66 16 chain 96339 chr6 170805979 + 10720419 10722062 LTR12C 1709 + 0 1532 18732 38 0 4 46 0 3 199 0 5 347 5 127 68 1 0 70 5 7 26 2 1 171 1 0 4 10 12 96 0 4 61 39 39 13 0 2 5 221 98 62 129 0 24 chain 2421 chr6 170805979 + 10721734 10721835 LTR12C 1709 + 1447 1546 82878 16 0 4 11 6 1 59 1 0 8 chain 8372 chr6 170805979 + 10736046 10736179 LTR8 732 + 11 156 73963 4 0 1 16 0 9 67 11 13 35 chain 17184 chr6 170805979 + 10741601 10742156 LTR12D 1347 + 587 1191 59590 57 41 0 14 37 0 35 0 18 41 192 303 20 28 26 90 chain 78966 chr6 170805979 + 10853428 10854475 MER11A 1151 + 0 1145 21881 61 1 100 25 0 7 12 1 0 4 0 1 20 0 4 60 4 0 32 0 2 112 5 6 92 0 1 147 1 4 145 25 8 77 0 1 24 0 1 21 1 0 16 0 1 161 chain 13222 chr6 170805979 + 10855366 10855608 MER52C 1267 + 122 485 64743 138 72 193 32 chain 37241 chr6 170805979 + 10866734 10867231 L1PA8 5853 + 5368 5853 36591 26 0 2 168 1 0 44 2 0 51 7 0 19 15 13 51 1 0 18 3 2 91 chain 17684 chr6 170805979 + 10997898 10998279 MSTB 430 + 0 417 59024 73 1 0 15 13 9 29 69 88 8 0 12 42 14 13 14 1 6 48 10 16 44 chain 3548 chr6 170805979 + 11014144 11014188 L1ME1 1623 + 1209 1253 94862 44 chain 12494 chr6 170805979 + 11072692 11072894 THE1B 368 + 154 366 65995 15 1 0 29 34 45 123 chain 123438 chr6 170805979 + 11087035 11088581 LTR12C 1709 + 0 1709 14949 578 0 2 27 3 4 142 0 161 198 1 0 112 0 4 166 1 0 61 1 0 189 15 14 22 1 0 29 chain 3799 chr6 170805979 + 11146924 11146977 MLT1B 390 + 123 177 92851 23 0 2 22 1 0 7 chain 101561 chr6 170805979 + 11170892 11172258 LTR12C 1709 + 0 1709 18121 278 0 9 175 10 9 18 0 1 19 4 5 53 0 2 5 6 4 32 0 1 99 0 360 42 1 0 5 3 1 106 11 4 81 20 4 248 1 0 60 5 4 84 chain 9141 chr6 170805979 + 11179369 11179540 MSTD 398 + 210 383 72254 64 34 35 14 1 2 58 chain 6037 chr6 170805979 + 11249156 11249228 MLT2B4 540 + 125 197 80939 72 chain 509390 chr6 170805979 + 11298870 11304963 L1PA6 6164 + 1 6162 2800 193 1 2 4 1 0 127 0 1 120 0 4 7 20 1 109 1 0 218 0 17 97 0 4 167 2 1 379 1 0 527 4 1 345 0 1 471 10 12 380 0 1 527 0 1 902 0 2 33 0 54 53 0 1 238 8 10 402 0 3 746 chain 28578 chr6 170805979 + 11321928 11322336 L1PA8 5853 + 5446 5847 43987 118 0 2 5 4 1 38 2 0 65 22 20 45 2 1 19 1 0 87 chain 97521 chr6 170805979 + 11334570 11335847 HSMAR1 1287 + 0 1287 18586 17 1 0 7 1 2 518 40 39 472 0 11 221 chain 89487 chr6 170805979 + 11347292 11348561 L1PA13 3608 + 2231 3488 19760 77 0 9 104 30 4 62 3 4 9 0 1 87 9 13 157 2 0 5 0 2 123 0 1 36 0 4 164 1 8 30 1 0 19 0 1 9 1 0 113 2 0 61 1 0 57 13 9 38 5 3 7 2 0 18 1 0 22 chain 22850 chr6 170805979 + 11360410 11360810 MSTA 426 + 0 426 52581 11 2 3 86 27 48 33 7 13 33 41 39 160 chain 26527 chr6 170805979 + 11394840 11395195 L1PA8 5853 + 5506 5853 46937 58 2 1 45 2 0 69 1 0 11 1 0 10 1 0 40 2 1 19 2 1 92 chain 31711 chr6 170805979 + 11399796 11400764 L1MA4 2864 + 2138 2801 40570 11 3 0 41 49 45 93 19 16 145 11 10 20 274 17 78 0 1 6 2 0 22 3 1 26 4 1 22 112 81 27 chain 512857 chr6 170805979 + 11451813 11457954 L1PA6 6164 + 0 6160 2627 194 20 20 11 13 14 70 13 16 129 22 20 234 1 0 6 0 1 737 0 1 274 0 1 412 0 3 182 11 0 295 0 3 259 0 1 637 0 1 370 0 1 67 0 1 163 0 5 183 0 1 51 0 8 255 4 0 655 5 8 27 1 5 82 0 1 185 0 2 399 4 3 159 3 0 8 chain 42207 chr6 170805979 + 11464172 11464634 L1PA3long 6157 + 5692 6157 33245 135 0 3 327 chain 98876 chr6 170805979 + 11505213 11506679 L1PA15 4387 + 2863 4316 18428 70 7 3 228 5 4 242 10 14 389 2 0 20 2 1 25 0 1 11 21 23 39 11 10 161 2 1 15 27 26 38 5 4 19 4 0 10 1 0 50 6 3 46 chain 24592 chr6 170805979 + 11534595 11534890 THE1B-int 1605 + 1310 1605 49876 295 chain 88700 chr6 170805979 + 11548053 11549086 L1PA5 6144 + 5105 6142 19906 31 2 0 159 0 8 265 0 2 63 0 1 294 1 0 207 4 0 7 chain 11591 chr6 170805979 + 11611490 11612045 MER45B 1037 + 648 864 67587 49 45 44 30 338 0 93 chain 6279 chr6 170805979 + 11635962 11636031 SVA_B 1603 + 1534 1603 80065 69 chain 13611 chr6 170805979 + 11697008 11697330 THE1B 368 + 0 368 64152 44 10 39 80 10 9 26 103 121 49 chain 40549 chr6 170805979 + 11780628 11781171 MLT2A2 560 + 0 560 34267 249 4 0 189 33 50 62 0 4 6 chain 533222 chr6 170805979 + 11836907 11843346 L1PA7 6471 + 16 6470 1698 209 38 38 147 0 2 202 0 1 110 7 1 351 0 1 610 0 3 5 4 1 935 11 0 63 0 1 402 0 1 58 0 1 243 0 10 17 3 4 72 0 1 62 0 5 437 1 0 1018 0 1 122 4 5 189 0 1 203 0 1 126 0 3 32 1 0 687 5 10 58 2 0 5 chain 17223 chr6 170805979 + 11847067 11847368 THE1B 368 + 0 306 59554 108 5 6 37 19 18 17 39 45 9 1 0 66 chain 3471 chr6 170805979 + 11864260 11864298 L1MB2 1706 + 677 715 95444 38 chain 205857 chr6 170805979 + 11881665 11884016 L1PA6 6164 + 3805 6159 9509 560 0 4 670 1 0 1120 chain 3184 chr6 170805979 + 11921586 11921680 MER53 195 + 33 129 98037 34 42 44 18 chain 120271 chr6 170805979 + 11932843 11934427 LTR12C 1709 + 0 1709 15487 153 4 0 50 53 1 421 0 1 127 0 161 198 1 0 5 3 1 106 0 4 76 70 85 65 6 5 48 0 4 198 chain 25532 chr6 170805979 + 11969697 11969996 AluSp 311 + 4 301 48433 128 2 0 169 chain 522571 chr6 170805979 + 12139366 12145526 L1PA6 6164 + 0 6162 2156 459 7 6 467 0 1 51 12 5 328 0 2 467 1 0 139 1 0 191 0 3 78 0 4 124 20 0 46 0 2 694 0 1 272 0 1 355 1 0 898 0 7 34 9 8 131 0 1 409 0 7 122 0 3 179 1 2 358 0 2 244 1 0 61 chain 14799 chr6 170805979 + 12154595 12154818 L1PA8 5853 + 5646 5853 62533 33 1 0 60 3 2 19 1 0 41 13 0 52 chain 7414 chr6 170805979 + 12178340 12178430 AluJr 308 + 34 124 76359 90 chain 4800 chr6 170805979 + 12267327 12267383 Tigger1 2417 + 1414 1470 86703 56 chain 62183 chr6 170805979 + 12267393 12268322 Tigger1 2417 + 627 1572 25821 19 11 12 99 5 7 160 0 1 105 0 1 5 0 3 141 20 19 69 30 36 80 6 9 89 0 9 8 14 5 68 chain 2698 chr6 170805979 + 12333708 12333782 Tigger3a 397 + 0 75 102363 21 33 34 20 chain 8218 chr6 170805979 + 12362625 12362799 MER30 238 + 30 230 74355 67 61 87 46 chain 5793 chr6 170805979 + 12385561 12385630 L1P5 443 + 134 203 81957 69 chain 130283 chr6 170805979 + 12399072 12400858 L1PB1 5432 + 3663 5418 14004 59 43 0 23 1 3 278 18 4 318 1 0 5 0 2 29 0 2 207 11 64 149 1 0 297 1 2 9 1 0 20 1 0 12 1 0 12 15 9 53 2 1 16 1 0 43 1 0 13 16 4 30 2 0 5 1 0 14 2 0 26 1 0 16 1 0 16 1 0 14 chain 6571 chr6 170805979 + 12427862 12427943 MER5A1 166 + 15 96 79074 81 chain 37729 chr6 170805979 + 12525944 12526406 LTR2 463 + 0 463 36256 352 10 11 100 chain 554707 chr6 170805979 + 12549192 12555344 L1PA3long 6157 + 6 6157 433 1916 18 0 1152 0 4 505 0 14 107 1 0 545 0 1 1749 6 5 153 chain 17131 chr6 170805979 + 12639478 12639670 L1PA7 6471 + 6274 6466 59662 192 chain 164817 chr6 170805979 + 12642652 12644593 L1PA7 6471 + 4517 6458 11426 214 13 11 206 2 1 658 8 11 840 chain 24911 chr6 170805979 + 12667169 12667579 LTR7 482 + 0 482 49411 69 6 95 21 51 0 39 8 40 20 0 1 4 6 7 186 chain 282168 chr6 170805979 + 12667591 12671396 HERVH-int 3825 + 10 3825 7369 10 2 1 509 1 0 11 1 0 4 0 1 24 4 3 7 62 0 19 1 31 13 241 54 14 21 0 68 0 1 4 2 0 92 0 1 554 20 11 10 0 2 16 1 0 215 8 35 351 23 28 105 0 4 193 16 17 207 0 10 435 9 11 38 0 210 269 0 2 225 chain 26156 chr6 170805979 + 12672655 12673014 LTR7 482 + 0 482 47490 68 7 96 60 8 40 20 0 1 4 0 1 192 chain 25451 chr6 170805979 + 12683836 12684195 MLT2A1 477 + 0 380 48555 21 0 1 11 8 15 89 3 4 21 7 11 107 0 8 92 chain 47050 chr6 170805979 + 12743580 12744103 L1P1 4361 + 2403 2928 30635 97 0 2 426 chain 16162 chr6 170805979 + 12854559 12854885 L1PA17 2846 + 2379 2693 60800 23 0 2 96 4 0 17 5 0 18 1 0 31 88 84 43 chain 24591 chr6 170805979 + 12867986 12868278 AluSc5 308 + 9 302 49877 86 0 1 206 chain 11824 chr6 170805979 + 12888119 12888445 MLT1A1 405 + 92 405 67161 21 166 153 139 chain 16737 chr6 170805979 + 13076920 13077102 L1PA2 6032 + 5845 6030 60114 61 0 3 121 chain 15202 chr6 170805979 + 13131247 13131587 L1PB1 5432 + 5114 5422 62041 23 1 0 7 1 0 14 5 1 9 3 1 50 1 0 10 8 7 43 2 1 16 3 0 17 52 37 21 7 6 17 1 0 11 1 0 17 chain 125611 chr6 170805979 + 13133300 13134808 SVA_B 1603 + 0 1603 14611 19 0 28 149 2 0 331 40 0 246 0 40 107 4 0 37 9 5 12 0 77 552 chain 14743 chr6 170805979 + 13214055 13214219 U1 164 + 0 164 62607 164 chain 9537 chr6 170805979 + 13312997 13313155 MER2 342 + 113 273 71400 4 1 0 80 0 11 12 3 1 6 0 2 20 10 2 22 chain 215339 chr6 170805979 + 13387279 13389774 L1PA6 6164 + 3664 6160 9163 492 0 1 208 0 4 381 0 1 786 1 2 610 6 0 11 chain 5179 chr6 170805979 + 13406964 13407027 MLT1J 494 + 102 165 84776 63 chain 88781 chr6 170805979 + 13442449 13444818 Tigger1 2417 + 959 2356 19892 80 0 3 191 0 24 140 1 21 619 17 15 37 1166 150 14 1 0 103 chain 38352 chr6 170805979 + 13512368 13513148 LTR12D 1347 + 0 822 35812 157 188 176 14 3 7 33 1 0 4 19 20 15 1 4 105 2 33 125 21 13 42 1 25 49 chain 90078 chr6 170805979 + 13541372 13542872 LTR12C 1709 + 0 1692 19669 18 0 14 179 1 0 250 8 9 249 0 118 234 0 47 106 11 4 53 0 1 9 38 37 27 288 306 10 0 2 19 chain 46105 chr6 170805979 + 13546665 13547293 MER4B 649 + 0 634 31014 183 10 10 23 0 2 149 0 4 40 0 1 150 13 12 60 chain 19983 chr6 170805979 + 13547703 13547942 7SK 245 + 0 239 56405 239 chain 25320 chr6 170805979 + 13548998 13549419 MSTA 426 + 1 414 48755 65 49 1 35 22 46 50 3 0 38 2 0 60 0 21 97 chain 3769 chr6 170805979 + 13592182 13592242 MER5A1 166 + 54 116 93072 30 8 10 22 chain 13988 chr6 170805979 + 13717280 13717926 LTR12C 1709 + 875 1439 63615 34 17 19 140 430 346 25 chain 5077 chr6 170805979 + 13743681 13743863 LTR12C 1709 + 773 997 85261 60 104 146 18 chain 2929 chr6 170805979 + 13747183 13747311 MER58C 217 + 66 192 100603 21 8 0 7 60 67 27 1 0 4 chain 4646 chr6 170805979 + 13758737 13758889 L2a 937 + 185 331 87545 21 81 75 50 chain 87249 chr6 170805979 + 13772314 13773563 LTR12C 1709 + 0 1519 20184 76 0 1 68 0 1 35 0 2 29 0 2 81 6 7 348 0 278 184 1 0 5 3 1 106 0 4 87 19 30 18 57 57 15 6 7 21 45 15 32 0 2 7 chain 5248 chr6 170805979 + 13776583 13776700 MLT1A0 366 + 182 294 84458 19 12 11 39 24 20 23 chain 17155 chr6 170805979 + 13781365 13781584 HSMAR2 1300 + 1076 1297 59629 128 0 2 91 chain 33697 chr6 170805979 + 13834115 13834553 L1PA8 5853 + 5420 5853 38926 100 10 11 33 1 0 43 3 1 85 1 0 47 2 1 19 1 0 93 chain 27881 chr6 170805979 + 13835237 13835590 L1PA8 5853 + 5506 5853 45061 56 1 0 46 2 0 71 2 1 59 3 2 19 1 0 93 chain 10511 chr6 170805979 + 13838281 13838414 MER65A 464 + 328 463 69399 105 0 2 28 chain 17534 chr6 170805979 + 13860701 13860975 LTR12C 1709 + 699 996 59199 138 1 0 50 22 22 14 11 35 38 chain 35612 chr6 170805979 + 13878335 13878790 LTR17 781 + 255 753 37653 71 2 1 368 2 46 12 chain 184307 chr6 170805979 + 13880872 13883083 HERV17-int 4347 + 12 4347 10369 15 1 0 52 1 0 11 0 37 11 2 1 196 17 447 683 20 4 13 0 1 577 0 1672 10 0 3 602 chain 25576 chr6 170805979 + 13883396 13883724 LTR17 781 + 0 326 48356 59 1 0 120 1 0 147 chain 4804 chr6 170805979 + 13918601 13918656 MER53 195 + 11 66 86677 55 chain 120372 chr6 170805979 + 13971482 13973428 THE1B-int 1605 + 0 1605 15468 15 0 2 79 57 0 14 0 4 41 0 2 273 360 33 152 21 24 28 7 8 66 9 18 515 0 22 309 chain 17952 chr6 170805979 + 14002856 14003084 LTR12C 1709 + 769 1037 58699 68 1 0 140 1 42 18 chain 59249 chr6 170805979 + 14068434 14069143 LTR17 781 + 0 754 26587 327 0 1 367 2 46 13 chain 14362 chr6 170805979 + 14105784 14106001 LTR62 707 + 7 207 63094 62 1 2 34 12 0 93 6 0 9 chain 5804 chr6 170805979 + 14240731 14240826 MER33 330 + 100 221 81901 23 1 0 19 6 33 46 chain 30919 chr6 170805979 + 14289310 14289675 L1PA6 6164 + 5796 6162 41203 221 0 1 144 chain 14140 chr6 170805979 + 14359675 14359906 MER34B 572 + 300 534 63395 102 17 19 22 12 14 28 1 0 49 chain 557282 chr6 170805979 + 14479992 14486135 L1PA3long 6157 + 19 6157 285 554 0 4 261 2 1 350 0 3 465 11 0 4167 1 0 328 0 1 4 chain 4993 chr6 170805979 + 14503787 14503846 MER39B 650 + 0 59 85693 59 chain 12670 chr6 170805979 + 14546909 14547130 MER30 238 + 0 237 65684 18 12 13 32 4 5 39 8 26 66 3 0 32 1 0 6 chain 11897 chr6 170805979 + 14550842 14551023 UCON28a 235 + 11 185 67017 18 14 9 115 2 0 32 chain 35969 chr6 170805979 + 14600338 14600773 LTR10F 562 + 11 562 37431 20 0 1 102 0 115 313 chain 28438 chr6 170805979 + 14732068 14732543 MER4A1 472 + 0 472 44211 99 68 40 91 1 22 144 16 18 14 1 3 41 chain 5093 chr6 170805979 + 14750616 14750755 MER53 195 + 9 164 85186 53 63 79 23 chain 23868 chr6 170805979 + 14846916 14847200 AluSp 311 + 0 288 50999 91 0 3 16 1 2 176 chain 28446 chr6 170805979 + 14891787 14892141 THE1A 353 + 0 353 44200 18 0 1 4 1 0 86 2 1 243 chain 53996 chr6 170805979 + 14899508 14900182 L1PA10 4194 + 3471 4150 28228 238 0 3 93 1 3 83 0 3 222 3 0 34 chain 3109 chr6 170805979 + 14907937 14907985 L1ME1 1623 + 1228 1280 98707 23 4 8 21 chain 8871 chr6 170805979 + 14924190 14924397 MER20 218 + 17 218 72830 15 1 0 41 36 38 50 28 24 12 4 1 20 chain 4342 chr6 170805979 + 14935046 14935104 MER110A 451 + 262 319 89225 40 1 0 17 chain 8013 chr6 170805979 + 14952120 14952217 MSTC 436 + 0 98 74857 21 0 1 76 chain 6665 chr6 170805979 + 14966662 14966740 MER41B 635 + 48 126 78758 78 chain 4155 chr6 170805979 + 15004733 15004781 Tigger4a 237 - 189 237 90436 48 chain 5744 chr6 170805979 + 15019450 15019520 MER41B 635 + 15 100 82159 27 0 15 43 chain 21849 chr6 170805979 + 15048865 15049127 HERVL-int 5654 + 4374 4638 54043 137 0 2 125 chain 16663 chr6 170805979 + 15122855 15123053 THE1A 353 + 154 353 60195 7 0 1 191 chain 14605 chr6 170805979 + 15129032 15129279 MER39B 650 + 257 500 62795 89 12 13 57 24 20 7 1 0 57 chain 4153 chr6 170805979 + 15155585 15155630 MSTD 398 + 290 335 90447 45 chain 135536 chr6 170805979 + 15188490 15190590 SVA_F 1814 + 335 1814 13483 553 1 0 5 226 0 55 0 15 218 409 0 633 chain 9946 chr6 170805979 + 15189103 15189231 SVA_F 1814 + 962 1090 42576 128 chain 2355 chr6 170805979 + 15189231 15189257 SVA_F 1814 + 1266 1291 65984 8 1 0 17 chain 21141 chr6 170805979 + 15189548 15189827 SVA_F 1814 + 941 1181 48770 6 0 15 43 53 0 165 1 0 11 chain 3692 chr6 170805979 + 15189597 15189635 SVA_F 1814 + 1132 1170 75199 38 chain 10824 chr6 170805979 + 15189834 15189956 SVA_F 1814 + 1011 1132 63214 117 1 0 4 chain 12466 chr6 170805979 + 15210330 15210489 MER41A 554 + 14 174 66042 73 5 6 81 chain 4508 chr6 170805979 + 15314931 15314980 U6 107 + 12 61 88273 49 chain 148833 chr6 170805979 + 15337175 15339964 HUERS-P2-int 2744 + 2 2487 12431 12 30 17 5 0 1 17 7 6 15 11 9 7 1 0 53 2 1 18 229 185 26 7 8 11 7 6 21 3 13 8 21 0 20 6 4 272 20 18 45 0 2 109 1 22 45 1 5 261 8 17 9 2 1 139 7 20 42 6 7 205 1 0 74 2 1 117 0 3 367 20 69 50 326 0 59 21 20 43 chain 8820 chr6 170805979 + 15537445 15537550 THE1D-int 1627 + 1515 1622 72951 70 0 1 8 0 1 27 chain 6265 chr6 170805979 + 15558577 15558816 MER41-int 2638 + 1160 1404 80112 29 147 154 6 2 0 55 chain 27085 chr6 170805979 + 15566048 15566336 AluYa5 310 + 16 303 46146 116 1 0 171 chain 62271 chr6 170805979 + 15667058 15667760 L1PA4 6152 + 5381 6084 25802 427 3 4 272 chain 23238 chr6 170805979 + 15686745 15687024 AluY 311 + 16 292 52022 39 0 1 53 1 0 14 1 0 10 1 0 149 1 0 10 chain 23392 chr6 170805979 + 15692778 15693103 LTR8 732 + 7 307 51773 198 6 7 37 26 0 58 chain 3253 chr6 170805979 + 15694612 15694648 MER53 195 + 24 60 97454 36 chain 2959 chr6 170805979 + 15773775 15774188 L2a 937 + 282 685 100290 22 106 103 17 214 226 8 19 0 27 chain 5153 chr6 170805979 + 15813441 15813521 MADE1 96 + 0 95 84894 31 2 18 6 1 0 40 chain 31711 chr6 170805979 + 15876949 15877315 L1PA6 6164 + 5796 6162 40571 366 chain 19190 chr6 170805979 + 15925281 15925611 L1PA15 4387 + 4041 4356 57362 63 1 0 26 1 0 31 0 2 22 26 22 10 1 0 50 6 3 44 3 1 14 5 0 27 chain 24057 chr6 170805979 + 15938788 15939108 THE1B-int 1605 + 1196 1584 50716 121 1 2 118 0 68 47 8 7 25 chain 11776 chr6 170805979 + 15939115 15939364 THE1B 368 + 0 276 67259 35 5 20 84 28 31 5 1 0 19 39 49 33 chain 45899 chr6 170805979 + 15941896 15942482 L1PA8 5853 + 5271 5853 31105 293 1 0 35 0 1 8 2 0 71 1 0 10 1 0 45 9 8 13 4 5 93 chain 4317 chr6 170805979 + 15953791 15953862 MER5A 189 + 34 105 89384 42 1 0 6 6 7 16 chain 61020 chr6 170805979 + 16008679 16009350 L1PA3long 6157 + 5481 6152 26099 671 chain 44124 chr6 170805979 + 16019752 16020362 MER4A1_ 611 + 0 611 32067 120 2 3 108 24 25 128 9 8 219 chain 43937 chr6 170805979 + 16037617 16038450 MER9a1 513 + 0 513 32173 13 1 0 163 319 0 337 chain 19169 chr6 170805979 + 16046009 16046240 THE1B-int 1605 + 1346 1578 57377 115 0 1 116 chain 42787 chr6 170805979 + 16176588 16177145 L1PA8 5853 + 5300 5852 32895 182 0 2 73 8 7 46 2 0 69 15 13 48 3 2 18 1 0 92 chain 16925 chr6 170805979 + 16218561 16219093 LTR12E 1234 + 777 1220 59882 115 0 3 21 305 212 19 0 1 72 chain 8579 chr6 170805979 + 16231728 16231831 LTR61 567 + 464 567 73496 103 chain 3009 chr6 170805979 + 16265914 16265949 LTR12 884 + 693 728 99761 35 chain 7433 chr6 170805979 + 16266186 16266365 LTR12 884 + 552 810 76294 20 29 79 61 1 0 15 31 61 22 chain 13897 chr6 170805979 + 16266810 16267030 LTR12_ 688 + 362 612 63738 26 3 4 124 1 0 15 31 61 20 chain 23933 chr6 170805979 + 16267379 16267699 LTR12_ 688 + 362 688 50892 91 2 1 139 1 0 24 19 27 44 chain 14464 chr6 170805979 + 16312367 16312567 MER87B 500 + 7 208 62949 46 5 6 149 chain 43480 chr6 170805979 + 16344295 16344852 MLT2A2 560 + 2 560 32466 105 7 8 65 1 0 147 0 1 232 chain 104965 chr6 170805979 + 16346700 16348123 LTR12C 1709 + 0 1707 17693 121 0 1 158 8 0 12 1 9 34 0 43 38 4 5 45 2 0 111 0 5 20 14 15 102 0 118 275 1 0 5 13 11 96 11 4 141 3 0 107 0 131 89 1 0 11 chain 34233 chr6 170805979 + 16358131 16360064 L1PB1 5432 + 4779 5427 38536 25 17 24 152 7 13 101 21 23 21 1 0 4 3 2 14 26 20 35 1275 8 11 5 4 45 1 0 20 3 0 10 9 0 16 2 0 5 1 0 14 2 0 15 1 0 9 1 0 21 1 0 13 1 0 14 1 0 5 1 0 4 chain 28494 chr6 170805979 + 16378890 16379392 L1PB1 5432 + 4942 5417 44137 137 1 4 20 4 3 8 1 0 24 1 0 9 16 11 9 2 0 53 2 1 16 1 0 44 2 1 14 3 0 7 14 5 15 12 9 14 2 0 24 1 0 22 0 3 9 1 0 9 1 0 4 chain 3783 chr6 170805979 + 16394981 16395031 MER63D 473 + 89 139 92971 50 chain 25729 chr6 170805979 + 16395735 16396039 AluSc5 308 + 0 305 48124 108 1 2 195 chain 50127 chr6 170805979 + 16406469 16407056 LTR10C 591 + 0 591 29514 259 0 1 176 0 1 73 0 2 79 chain 23077 chr6 170805979 + 16453206 16453479 AluSc8 310 + 28 303 52249 105 0 2 168 chain 34697 chr6 170805979 + 16455729 16456250 LTR12F 595 + 0 595 38225 46 21 98 24 33 22 12 5 14 108 2 1 270 chain 442435 chr6 170805979 + 16456281 16461939 HERV9-int 5642 + 11 5642 4533 68 4 5 512 6 8 112 3 0 132 4 2 32 88 2 17 24 109 96 6 0 8 12 15 115 0 1 14 5 0 6 1 6 306 1 2 7 1 0 55 6 14 527 0 2 18 2 3 653 0 3 472 1 0 24 3 0 5 3 6 608 0 1 91 17 5 212 29 31 5 2 0 233 1 0 27 0 9 511 0 1 129 2 1 101 5 8 116 10 8 34 2 0 25 2 1 60 1 0 13 28 5 19 4 0 3 2 0 17 chain 39025 chr6 170805979 + 16464105 16464625 LTR12F 595 + 0 595 35338 72 0 1 18 26 19 22 1 83 109 1 0 271 chain 25591 chr6 170805979 + 16618075 16618427 L1PA8 5853 + 5506 5853 48335 58 1 0 45 2 0 73 1 0 8 9 10 40 2 1 19 2 1 92 chain 57763 chr6 170805979 + 16636863 16637505 L1PA5 6144 + 5501 6143 27030 642 chain 30994 chr6 170805979 + 16638927 16639382 LTR12F 595 + 0 595 41132 100 6 91 19 15 30 28 24 0 19 0 64 244 chain 23823 chr6 170805979 + 16644251 16644530 AluSc 308 + 10 296 51063 13 0 7 266 chain 183919 chr6 170805979 + 16701421 16703480 L1PA4 6152 + 4075 6141 10388 179 0 1 1124 0 5 654 0 1 102 chain 4626 chr6 170805979 + 16766624 16766878 MER33 330 + 42 224 87667 17 4 2 35 170 100 28 chain 9972 chr6 170805979 + 16768915 16769036 MER85 139 + 2 139 70480 88 0 10 24 0 6 9 chain 139714 chr6 170805979 + 16860601 16862092 L1HS 6032 + 4530 6021 13117 1491 chain 27950 chr6 170805979 + 16885984 16886384 LTR7 482 + 0 482 44945 54 23 61 109 0 1 41 17 58 58 0 2 98 chain 295399 chr6 170805979 + 16886386 16889983 HERVH-int 3825 + 0 3825 6966 121 5 1 89 0 11 111 1 0 202 1 0 4 1 0 6 0 1 24 1 0 10 1 0 9 4 0 14 7 1 14 1 0 13 26 0 26 8 26 14 1 0 59 0 1 6 0 2 13 0 3 445 15 0 323 0 1 135 4 31 280 0 8 293 0 1 155 0 1 388 0 2 225 10 12 39 8 218 262 0 2 223 chain 30890 chr6 170805979 + 16891245 16891647 LTR7 482 + 0 482 41225 69 8 46 109 0 1 41 0 31 8 0 1 9 0 9 158 chain 38245 chr6 170805979 + 16924650 16925113 L1PA7 6471 + 6010 6470 35876 71 2 0 220 0 1 18 0 1 138 2 0 7 1 0 4 chain 3111 chr6 170805979 + 16937543 16937576 LTR54B 464 + 162 195 98691 33 chain 23323 chr6 170805979 + 16989983 16990331 THE1B 368 + 0 340 51892 15 2 0 32 0 1 58 10 11 52 31 24 100 1 0 47 chain 5256 chr6 170805979 + 17017385 17017450 L1M3 994 + 211 276 84406 65 chain 14443 chr6 170805979 + 17052367 17052604 Tigger3b 1229 + 324 947 62975 7 3 0 13 0 389 32 0 2 52 13 15 39 5 1 73 chain 121516 chr6 170805979 + 17069150 17070707 THE1A-int 1579 + 0 1565 15260 15 14 16 458 0 1 7 1 0 83 1 0 74 0 3 152 6 9 162 0 1 584 chain 516897 chr6 170805979 + 17073354 17079914 L1PA7 6471 + 7 6468 2424 83 0 213 105 27 10 46 0 1 109 0 1 37 11 14 54 37 35 41 0 17 240 0 2 48 4 0 1426 1 0 345 0 1 54 0 4 152 0 2 49 0 4 46 334 0 57 0 7 293 2 0 73 0 3 260 0 1 836 0 4 92 0 3 846 1 0 391 1 0 309 1 0 137 2 0 10 chain 41491 chr6 170805979 + 17131916 17132500 Charlie3 2679 + 350 2679 33678 23 0 4 93 0 1747 228 1 2 148 31 24 60 chain 28767 chr6 170805979 + 17166079 17166387 AluYa5 310 + 0 305 43677 118 3 0 187 chain 1326 chr6 170805979 + 17222130 17222199 LTR56 451 + 0 70 59439 29 11 12 29 chain 25116 chr6 170805979 + 17222217 17222571 THE1D 372 + 0 372 49093 65 0 10 115 1 2 43 11 17 53 0 2 29 2 1 35 chain 8590 chr6 170805979 + 17222584 17223031 LTR56 451 + 95 315 59439 40 0 1 53 228 4 95 15 11 16 chain 96627 chr6 170805979 + 17244239 17245557 L1PA13 3608 + 2240 3518 18701 96 0 3 779 3 0 5 42 24 16 1 0 5 2 1 4 0 1 100 2 0 61 1 0 56 2 0 5 2 0 47 2 0 5 2 0 18 1 0 22 0 3 6 19 7 14 chain 79069 chr6 170805979 + 17273610 17274736 L1PA15 4387 + 2760 3856 21850 71 6 0 179 0 1 146 7 0 11 2 0 117 1 0 12 0 3 71 11 9 119 2 1 27 16 4 26 1 2 160 10 14 21 0 1 4 1 0 53 2 0 16 4 0 9 2 0 19 chain 22509 chr6 170805979 + 17313523 17313810 AluSp 311 + 9 294 53110 39 11 9 237 chain 8238 chr6 170805979 + 17314435 17314569 MLT1A0 366 + 12 148 74313 14 21 22 31 0 1 68 chain 28704 chr6 170805979 + 17388808 17389109 AluYa5 310 + 1 302 43793 301 chain 23254 chr6 170805979 + 17428539 17428785 L1PA2 6032 + 5784 6030 51996 246 chain 83947 chr6 170805979 + 17434795 17435694 L1HS 6032 + 5133 6032 20820 899 chain 23773 chr6 170805979 + 17482244 17482536 AluSc 308 + 0 308 51160 55 0 17 59 1 0 177 chain 33893 chr6 170805979 + 17546640 17547042 L1P1 4361 + 3942 4341 38790 208 1 0 155 1 0 23 2 1 12 chain 4574 chr6 170805979 + 17571232 17571407 MER4B 649 + 0 204 87946 22 5 4 21 93 123 34 chain 14958 chr6 170805979 + 17581087 17581267 LTR12C 1709 + 928 1108 62314 180 chain 3159 chr6 170805979 + 17581317 17581424 LTR12C 1709 + 957 1068 70530 47 26 30 34 chain 6999 chr6 170805979 + 17589886 17589991 Tigger4 2445 + 1960 2056 77601 83 1 0 3 8 0 10 chain 4206 chr6 170805979 + 17596168 17596218 Tigger3b 1229 + 58 108 90085 50 chain 18946 chr6 170805979 + 17715716 17715951 AluSp 311 + 64 298 57601 177 1 0 57 chain 5625 chr6 170805979 + 17729376 17729440 LTR12C 1709 + 654 718 82688 64 chain 74681 chr6 170805979 + 17806890 17807920 MER11A 1151 + 0 1151 22916 58 4 103 69 1 0 62 8 4 28 0 2 108 9 10 94 0 1 26 1 2 38 5 9 70 0 1 131 12 46 22 18 0 36 0 1 230 chain 2971 chr6 170805979 + 17977195 17977231 MER5A 189 + 144 180 100191 36 chain 18092 chr6 170805979 + 18020505 18020727 LTR12C 1709 + 946 1215 58567 125 0 47 97 chain 4702 chr6 170805979 + 18053385 18053434 tRNA-Arg-CGY_ 50 + 0 49 87258 49 chain 4091 chr6 170805979 + 18066365 18066412 MER21A 919 + 11 58 90844 47 chain 37822 chr6 170805979 + 18070507 18071007 MER75 514 + 0 513 36189 100 11 15 232 0 9 104 1 0 37 0 1 15 chain 17241 chr6 170805979 + 18089605 18090129 LTR12 884 + 96 687 59538 178 21 39 24 269 318 32 chain 83579 chr6 170805979 + 18113008 18114516 L1MA2 4263 + 2922 4114 20894 640 7 5 17 5 1 23 17 5 49 1 0 72 0 31 44 3 0 59 317 2 44 3 0 6 1 4 32 11 9 93 8 1 46 1 0 9 chain 73922 chr6 170805979 + 18226765 18227696 LTR5_Hs 974 + 0 974 23112 58 5 4 59 0 27 140 0 1 329 0 5 199 5 12 29 10 8 20 0 6 77 chain 492149 chr6 170805979 + 18228394 18234081 L1PA5 6144 + 0 5878 3369 461 1 2 85 0 119 13 0 3 120 5 20 126 0 4 196 0 3 1161 1 2 236 0 1 204 0 9 405 1 0 75 0 4 195 0 2 546 1 0 26 0 3 130 1 0 190 0 4 76 1 0 131 0 8 71 0 5 194 2 0 441 1 5 137 0 1 128 0 1 142 1 0 54 0 10 129 chain 23273 chr6 170805979 + 18250216 18250498 AluY 311 + 29 307 51971 103 0 1 156 3 0 5 2 0 13 chain 24533 chr6 170805979 + 18259053 18259423 AluY 311 + 5 311 49970 73 65 1 44 1 0 9 0 1 178 chain 12737 chr6 170805979 + 18309437 18309704 L1MA5 2750 + 2485 2726 65548 79 2 1 8 2 0 51 10 9 13 1 0 15 63 42 23 chain 8942 chr6 170805979 + 18331179 18331294 L1PB3 3668 + 3172 3286 72684 12 1 0 102 chain 32093 chr6 170805979 + 18435678 18436027 L1PA4 6152 + 5797 6146 40280 349 chain 104547 chr6 170805979 + 18548475 18549645 L1PA5 6144 + 4969 6141 17752 926 0 1 93 0 1 151 chain 42623 chr6 170805979 + 18552476 18552957 L1PA5 6144 + 5291 5775 32988 454 0 3 27 chain 17804 chr6 170805979 + 18574229 18574422 L1PA3long 6157 + 5964 6157 58887 193 chain 10006 chr6 170805979 + 18619599 18619797 MSTB1 431 + 91 287 70412 39 11 6 5 2 0 50 22 26 38 10 11 21 chain 478570 chr6 170805979 + 18656199 18662478 L1PA8A 6298 + 36 6290 3666 4 1 0 16 1 0 14 5 0 7 6 0 22 4 1 19 31 0 8 0 21 9 2 1 12 1 0 7 13 10 17 7 4 13 10 8 9 1 0 4 1 0 17 5 0 7 2 0 31 4 57 6 0 1 8 62 0 38 2 0 15 1 0 10 12 17 53 1 0 4 1 3 283 1 0 15 4 0 289 5 0 126 3 2 42 0 3 128 1 0 506 10 9 282 1 7 25 0 2 278 35 0 604 0 3 247 0 21 24 1 0 13 0 4 84 4 5 43 0 3 316 6 7 87 1 2 355 1 0 307 0 14 180 1 0 83 12 20 130 0 1 192 1 2 216 0 4 15 0 3 79 1 3 151 0 1 197 2 5 247 6 0 116 chain 180449 chr6 170805979 + 18725201 18727824 MER57-int 2662 + 99 2644 10567 9 1 0 112 1 2 91 3 1 52 11 6 42 0 2 23 6 8 372 8 6 85 0 1 181 4 0 221 0 1 89 2 1 187 9 10 238 31 17 42 0 1 4 7 8 86 1 2 18 6 7 285 16 0 19 3 0 11 2 0 82 21 15 61 50 30 16 1 0 5 1 0 10 4 1 15 24 18 33 3 0 19 chain 22226 chr6 170805979 + 18729973 18730246 AluSp 311 + 16 289 53512 273 chain 5611 chr6 170805979 + 18752417 18752535 MER5A 189 + 32 142 82756 39 17 16 22 0 1 4 14 6 22 chain 63948 chr6 170805979 + 18770948 18771846 Charlie3 2679 + 18 2679 25422 16 1 0 4 5 32 33 8 8 49 0 1 182 3 0 127 0 1747 74 10 1 311 21 22 54 chain 3897 chr6 170805979 + 18836170 18836213 tRNA-Gln-CAG 43 + 0 43 92159 43 chain 276130 chr6 170805979 + 18867282 18871585 L1PB1 5432 + 1778 5404 7543 87 0 1 419 5 0 125 0 1 4 310 0 80 9 1 392 1 4 121 0 1 708 41 16 156 0 1 61 0 4 355 308 0 299 9 7 22 0 1 64 0 1 53 1 2 273 16 16 49 1 0 15 3 0 17 1 0 13 16 11 9 2 0 53 2 1 16 1 0 43 1 0 16 25 13 18 8 5 13 2 0 12 0 1 12 1 0 21 1 0 13 chain 94438 chr6 170805979 + 18872664 18873739 MER11C 1089 + 0 1073 18973 180 2 0 893 chain 31765 chr6 170805979 + 18907554 18908001 L1PA8 5853 + 5410 5853 40524 109 1 4 41 2 1 43 2 0 70 2 1 14 6 5 41 7 6 15 1 0 93 chain 18494 chr6 170805979 + 18912970 18913168 L1HS 6032 + 3483 3681 58109 198 chain 27385 chr6 170805979 + 18936271 18936635 THE1C 375 + 0 363 45726 184 12 11 83 0 1 70 1 0 14 chain 6745 chr6 170805979 + 19049806 19049925 MLT1A1 405 + 195 348 78496 29 29 63 61 chain 10162 chr6 170805979 + 19051778 19051888 L1PA2 6032 + 5910 6020 70079 110 chain 68088 chr6 170805979 + 19104670 19105678 L1PREC2 3366 + 1449 2666 24434 86 1 2 44 43 258 63 27 22 552 14 0 7 3 11 73 1 5 94 chain 30202 chr6 170805979 + 19124537 19124900 L1PA8 5853 + 5496 5853 41848 68 1 0 46 2 0 72 1 0 62 1 0 18 1 0 91 chain 167859 chr6 170805979 + 19130078 19131931 L1PA4 6152 + 3368 5222 11221 572 0 1 1281 chain 31714 chr6 170805979 + 19212545 19212999 LTR7B 505 + 0 495 40567 108 0 10 57 0 38 12 34 27 26 0 2 82 1 0 79 14 13 41 chain 462653 chr6 170805979 + 19220828 19226135 L1PA4 6152 + 2 5301 4061 543 0 3 32 1 0 254 17 0 402 1 0 177 3 4 299 1 0 60 0 1 747 0 1 306 0 2 682 0 1 884 0 1 389 0 2 509 chain 432134 chr6 170805979 + 19239021 19244616 L1PA8 5853 + 50 5853 4719 22 2 0 10 66 26 72 0 9 113 22 26 202 0 1 151 8 6 40 4 2 53 0 3 188 9 12 498 5 5 280 3 1 247 0 1 28 0 1 110 1 3 111 0 4 22 1 2 691 0 1 4 4 5 394 0 1 186 5 6 55 0 1 5 2 1 400 1 2 74 0 3 16 6 5 216 0 247 344 29 10 41 0 2 72 0 1 75 3 0 20 2 0 387 1 0 45 2 0 70 1 0 9 1 0 52 2 1 19 1 0 28 0 1 64 chain 537890 chr6 170805979 + 19246953 19253092 L1PA4 6152 + 6 6151 1455 436 26 20 118 1 0 656 0 1 539 0 1 67 0 4 182 0 2 284 1 0 4 0 1 57 0 1 145 0 1 1163 0 2 406 1 3 841 0 1 8 1 0 610 1 0 592 chain 3010 chr6 170805979 + 19269608 19269639 L1M2c 2366 + 838 869 99740 31 chain 82953 chr6 170805979 + 19270611 19271756 LTR12D 1347 + 0 1347 21026 183 79 88 27 10 46 192 1 32 126 0 41 135 17 17 98 0 97 170 12 0 95 chain 7343 chr6 170805979 + 19438282 19438373 5S 121 + 0 90 76536 82 1 0 8 chain 28625 chr6 170805979 + 19461977 19462304 L1PA7 6471 + 6130 6459 43909 8 0 2 319 chain 535267 chr6 170805979 + 19481748 19487889 L1PA5 6144 + 0 6144 1607 321 0 3 1218 0 1 5 1 0 761 1 0 4 0 1 1188 1 0 2296 0 1 345 chain 359088 chr6 170805979 + 19495149 19499446 L1P1 4361 + 1 4341 5809 365 0 2 206 1 0 104 14 133 252 2 1 166 1 0 314 0 1 4 1 0 1207 0 1 5 39 11 778 49 0 141 1 0 291 0 5 163 1 0 154 1 0 23 2 1 12 chain 22339 chr6 170805979 + 19500292 19500540 L1PA4 6152 + 5196 5443 53353 105 1 0 142 chain 63002 chr6 170805979 + 19500541 19501251 L1PA4 6152 + 5443 6151 25625 703 2 0 5 chain 117008 chr6 170805979 + 19515369 19517026 THE1B-int 1605 + 0 1597 16054 115 54 0 158 0 6 151 38 21 28 17 26 199 17 13 605 0 1 29 0 9 6 9 0 192 1 0 38 chain 26791 chr6 170805979 + 19517402 19517767 MER1A 529 + 161 529 46554 175 1 2 118 17 19 54 chain 318326 chr6 170805979 + 19539467 19543154 HERVH-int 3825 + 30 3825 6434 303 2 1 147 15 123 14 1 0 13 24 21 4 1 0 41 1 0 52 0 1 13 0 2 13 0 1 1503 0 1 12 2 3 266 0 1 870 1 4 9 3 0 377 chain 61778 chr6 170805979 + 19575591 19576277 L1PA5 6144 + 4821 5508 25919 301 0 1 385 chain 47835 chr6 170805979 + 19584120 19584714 L1PA7 6471 + 5875 6470 30350 349 0 1 57 6 6 33 0 1 144 1 0 4 chain 269669 chr6 170805979 + 19620601 19623730 L1PA3long 6157 + 2216 5354 7716 343 0 1 738 1 0 7 3 4 634 1 2 477 1 4 72 1 5 851 chain 62210 chr6 170805979 + 19702054 19702740 L1PA2 6032 + 5340 6030 25812 479 0 3 192 0 1 15 chain 16808 chr6 170805979 + 19707239 19707440 L1PA5 6144 + 5942 6144 60022 187 1 2 13 chain 34336 chr6 170805979 + 19725449 19726059 L1PB1 5432 + 4843 5424 38469 260 1 0 10 6 5 20 26 20 9 2 0 53 2 1 12 9 8 40 1 0 15 1 0 4 4 0 3 5 0 22 17 10 11 2 0 24 1 0 19 1 7 8 2 1 15 1 0 4 chain 196497 chr6 170805979 + 19744299 19746518 L1PA6 6164 + 3931 6162 9829 434 0 8 945 0 4 840 chain 567938 chr6 170805979 + 19764892 19770918 L1HS 6032 + 6 6032 16 6026 chain 6708 chr6 170805979 + 19772281 19772376 Tigger1 2417 + 2323 2416 78618 12 4 2 79 chain 33496 chr6 170805979 + 19897247 19897666 L1PA8 5853 + 5438 5853 39092 124 1 0 48 2 0 68 2 4 11 1 0 47 2 1 19 1 0 93 chain 179454 chr6 170805979 + 19938696 19941167 SVA_D 2077 + 25 2077 10613 17 0 6 864 55 5 26 55 15 45 1 0 31 2 4 10 1 0 138 331 0 171 1 0 30 15 14 54 2 1 603 1 0 18 chain 4531 chr6 170805979 + 19939577 19939632 SVA_D 2077 + 1049 1231 40499 10 0 127 45 chain 4531 chr6 170805979 + 19939658 19939713 SVA_D 2077 + 1257 1312 40499 55 chain 17451 chr6 170805979 + 19939993 19940258 SVA_D 2077 + 683 907 59292 42 5 8 28 4 0 33 40 0 113 chain 3568 chr6 170805979 + 19940105 19940145 SVA_D 2077 + 834 874 76146 40 chain 32946 chr6 170805979 + 19958020 19958385 L1PA4 6152 + 5782 6152 39553 359 0 5 6 chain 3284 chr6 170805979 + 20020790 20020826 L1MA8 2339 + 2160 2196 97151 36 chain 368445 chr6 170805979 + 20075160 20082260 L1PB1 5432 + 26 5422 5689 125 24 22 59 26 28 9 0 1 36 12 7 38 1 5 92 46 41 83 0 1 4 2 1 145 1 2 37 45 43 45 0 3 294 0 1 185 21 29 16 19 22 9 0 2 24 4 9 232 0 1 4 1 0 81 4 1 392 1 0 4 0 1 208 0 4 470 3 0 364 0 2 48 0 8 44 9 18 403 13 6 154 46 36 37 1 3 146 16 0 15 0 18 112 0 1 253 0 6 93 18 17 21 9 10 34 1496 18 25 4 1 368 3 0 8 223 3 20 1 0 10 1 0 12 22 16 48 2 1 16 2 1 44 1 0 14 1 0 4 2 0 7 49 39 24 1 0 22 1 0 12 1 0 18 chain 132486 chr6 170805979 + 20079798 20081251 L1PA3long 6157 + 4704 6157 13745 1453 chain 8961 chr6 170805979 + 20094995 20095137 MLT1B 390 + 28 176 72650 44 21 27 77 chain 28502 chr6 170805979 + 20131243 20131623 THE1C 375 + 0 375 44125 179 0 2 5 18 13 150 2 0 26 chain 47052 chr6 170805979 + 20197242 20197862 MER4A1_ 611 + 1 611 30634 50 0 2 73 1 2 11 1 2 135 0 1 17 17 0 51 0 1 41 1 0 165 0 1 44 0 1 13 chain 2856 chr6 170805979 + 20226399 20226429 MLT2B1 522 + 486 516 101195 30 chain 26973 chr6 170805979 + 20233644 20234064 LTR12C 1709 + 773 1198 46305 64 1 2 37 5 3 224 46 15 15 6 43 22 chain 83921 chr6 170805979 + 20238882 20240103 LTR12C 1709 + 0 1708 20826 5 0 1 330 21 64 49 0 5 10 6 5 91 0 3 100 1 278 130 0 47 106 11 4 74 23 43 51 0 102 60 2 0 52 39 38 60 chain 18394 chr6 170805979 + 20259971 20260249 LTR12C 1709 + 769 1037 58251 68 1 0 118 50 0 22 1 42 18 chain 29749 chr6 170805979 + 20278591 20279023 MER4A1 472 + 0 454 42307 131 0 1 92 40 62 137 1 0 31 chain 5762 chr6 170805979 + 20282028 20282098 U3 216 + 0 70 82077 70 chain 3266 chr6 170805979 + 20288229 20288266 L1MB7 1623 + 1560 1597 97320 37 chain 110564 chr6 170805979 + 20301086 20302540 LTR12C 1709 + 6 1709 17000 190 6 15 68 4 0 7 5 10 423 0 118 157 2 0 80 1 0 38 1 0 5 3 1 106 0 4 108 1 9 51 0 102 114 22 21 9 0 14 53 chain 15158 chr6 170805979 + 20319370 20319578 LTR12C 1709 + 790 1038 62083 47 1 0 136 5 46 19 chain 2294 chr6 170805979 + 20320861 20320888 LTR12C 1709 + 810 837 104750 27 chain 4034 chr6 170805979 + 20331215 20331268 MADE1 96 + 1 70 91206 45 0 16 8 chain 27625 chr6 170805979 + 20339363 20339651 AluYd8 298 + 0 288 45427 288 chain 26449 chr6 170805979 + 20355044 20355475 Tigger2 2703 + 2285 2703 47057 78 1 3 42 6 0 7 12 18 63 0 3 42 0 1 116 46 27 18 chain 26012 chr6 170805979 + 20488714 20489017 AluSc5 308 + 1 305 47699 234 0 1 69 chain 53524 chr6 170805979 + 20525062 20525714 L1PA6 6164 + 5507 6162 28387 204 5 7 298 1 2 144 chain 28803 chr6 170805979 + 20544315 20544621 AluYg6 310 + 0 306 43624 306 chain 40453 chr6 170805979 + 20798454 20798925 L1PA5 6144 + 5675 6143 34345 460 3 0 8 chain 29399 chr6 170805979 + 20875018 20875331 AluYb8 318 + 0 314 42739 4 0 1 309 chain 6390 chr6 170805979 + 20906847 20907179 L1MB3 1562 + 1264 1513 79701 42 23 22 14 195 114 30 1 0 27 chain 37616 chr6 170805979 + 20924017 20924895 Tigger1 2417 + 491 1026 36327 52 376 28 343 0 1 16 8 12 83 chain 8971 chr6 170805979 + 20924092 20924215 Tigger1 2417 + 571 696 72629 14 8 10 101 chain 3254 chr6 170805979 + 20924371 20924421 Tigger1 2417 + 491 543 97446 34 4 6 12 chain 7721 chr6 170805979 + 20945210 20945400 Tigger4a 237 + 32 222 75558 31 6 5 67 41 48 11 14 8 20 chain 41036 chr6 170805979 + 21029851 21030487 L1PA8 5853 + 5216 5847 33942 90 9 12 60 0 1 90 4 0 5 0 1 89 1 0 46 2 0 7 1 5 21 3 0 27 37 35 34 6 5 16 1 0 87 chain 12742 chr6 170805979 + 21038591 21038790 MER30 238 + 0 237 65538 18 1 19 61 10 0 10 3 31 20 0 2 76 chain 47035 chr6 170805979 + 21265798 21266457 L1PA16 3655 + 2931 3593 30641 19 3 6 41 0 3 204 2 4 50 11 12 21 2 0 25 3 2 260 3 0 15 chain 39742 chr6 170805979 + 21282528 21283698 MER41C 542 + 0 542 34862 207 0 1 42 1 2 59 4 5 17 6 8 79 633 0 122 chain 141164 chr6 170805979 + 21319098 21320807 L1PA7 6471 + 4762 6470 13015 183 5 4 35 8 9 628 1 0 714 6 5 51 0 1 78 chain 4751 chr6 170805979 + 21329515 21329620 MER39 703 + 510 616 86957 11 1 0 5 0 3 39 28 27 21 chain 126273 chr6 170805979 + 21344660 21346230 L1PA6 6164 + 4598 6160 14512 428 0 1 203 8 7 604 6 1 277 13 13 22 3 0 6 chain 44532 chr6 170805979 + 21401554 21402110 MER41A 554 + 0 554 31812 70 4 0 32 0 2 450 chain 37451 chr6 170805979 + 21409886 21410367 L1PA8 5853 + 5378 5853 36440 186 1 0 44 2 0 71 1 0 13 6 5 43 2 1 19 1 0 44 0 1 48 chain 43020 chr6 170805979 + 21642813 21644321 Tigger1 2417 + 1426 2414 32762 248 0 1 16 902 372 221 1 7 44 10 13 66 chain 7274 chr6 170805979 + 21648423 21648537 L1MB3 1562 + 1442 1555 76751 82 10 9 22 chain 107826 chr6 170805979 + 21760977 21762448 LTR12C 1709 + 0 1709 17347 125 0 1 4 0 4 6 6 1 152 1 2 166 13 10 108 1 0 24 3 4 42 0 280 183 1 0 7 2 0 105 11 4 88 29 0 124 0 1 120 1 0 57 26 25 66 chain 394677 chr6 170805979 + 21874929 21881215 L1PB1 5432 + 59 5419 5238 147 1 0 19 1 0 4 0 1 176 1 0 155 0 3 44 2 1 18 4 5 645 9 13 104 39 24 89 0 1 329 0 1 511 0 1 144 6 0 67 0 3 13 0 5 260 2 0 278 1 0 17 25 26 102 0 1 11 303 0 17 2 1 37 0 1 110 0 5 157 295 0 47 1 20 64 7 2 139 0 1 62 5 0 95 322 0 58 4 1 182 0 1 299 4 3 30 8 9 196 4 0 209 23 24 5 1 0 51 1 2 10 3 0 6 19 37 9 2 0 53 2 1 16 1 0 44 2 1 12 30 18 12 14 11 11 2 0 24 1 0 21 1 0 13 1 0 15 chain 22243 chr6 170805979 + 21890181 21890463 AluSp 311 + 19 302 53488 109 0 3 142 1 0 4 6 5 20 chain 4877 chr6 170805979 + 21952717 21952951 MLT1A0 366 + 48 281 86282 16 5 0 27 149 153 37 chain 13169 chr6 170805979 + 21976534 21977050 L1PA8 5853 + 5654 5853 64828 24 2 1 9 8 7 45 2 1 19 314 0 93 chain 4747 chr6 170805979 + 22161914 22162018 MER3 215 + 85 207 86976 28 38 56 38 chain 13897 chr6 170805979 + 22193283 22193434 L1PA5 6144 + 5984 6135 63737 151 chain 25183 chr6 170805979 + 22227248 22227524 AluYa5 310 + 35 310 48982 4 1 0 271 chain 16922 chr6 170805979 + 22235584 22235944 THE1B 368 + 0 366 59883 15 2 0 29 6 7 54 10 12 50 74 77 26 9 11 85 chain 13076 chr6 170805979 + 22340259 22340454 MER30 238 + 30 238 64973 66 24 37 105 chain 11754 chr6 170805979 + 22370447 22370632 LTR9B 643 + 461 643 67303 15 6 5 107 17 15 40 chain 143399 chr6 170805979 + 22373912 22375944 HUERS-P3b-int 2065 + 13 2031 12823 81 6 0 167 0 1 47 5 6 264 0 1 40 0 1 6 2 1 59 4 0 69 93 94 186 1 6 177 1 2 168 0 1 69 0 1 11 1 0 42 10 8 80 2 0 13 2 1 23 1 0 43 8 7 40 3 1 73 0 2 16 4 1 57 7 8 7 5 0 48 1 0 90 chain 2920 chr6 170805979 + 22408870 22408902 L1MC1 2226 + 2152 2184 100669 32 chain 15281 chr6 170805979 + 22412670 22412878 MER30 238 + 0 234 61938 103 8 0 9 0 28 13 0 6 75 chain 22020 chr6 170805979 + 22474882 22475171 L1PA8 5853 + 5570 5853 53806 38 2 0 74 1 0 6 1 0 47 7 6 19 2 1 92 chain 79580 chr6 170805979 + 22523499 22524545 MER11C 1089 + 0 1073 21727 246 0 9 62 4 8 61 1 0 146 47 46 42 0 10 39 0 1 20 0 4 5 1 0 38 0 1 324 0 1 10 chain 31633 chr6 170805979 + 22555417 22555764 L1PA4 6152 + 4748 5095 40636 347 chain 4125 chr6 170805979 + 22587358 22587423 Zaphod 902 + 821 898 90619 51 1 13 13 chain 11764 chr6 170805979 + 22608905 22609142 MER2 342 + 0 253 67281 66 51 66 83 18 19 19 chain 3761 chr6 170805979 + 22620900 22620949 MADE1 96 + 46 93 93134 24 2 0 23 chain 3975 chr6 170805979 + 22626218 22626445 MER30 238 + 0 230 91603 16 18 0 8 13 151 15 117 0 40 chain 2889 chr6 170805979 + 22628632 22628664 U5 65 + 8 40 100930 32 chain 30683 chr6 170805979 + 22641102 22641535 MLT2A1 477 + 2 477 41399 80 0 1 80 10 7 9 0 1 23 0 1 23 0 1 48 0 3 99 4 6 17 3 39 37 chain 39659 chr6 170805979 + 22689801 22690269 L1PA7 6471 + 6000 6466 34919 459 2 0 7 chain 165039 chr6 170805979 + 22835755 22837873 SVA_D 2077 + 55 2056 11407 159 1 2 507 0 3 35 3 0 143 0 134 164 177 0 145 1 0 38 38 5 11 50 9 646 chain 1174 chr6 170805979 + 22836916 22836944 SVA_D 2077 + 947 975 40684 28 chain 1300 chr6 170805979 + 22837135 22837166 SVA_D 2077 + 1093 1124 40684 31 chain 2097 chr6 170805979 + 22837177 22837227 SVA_D 2077 + 1135 1185 40684 50 chain 51586 chr6 170805979 + 22869884 22870456 L1PA3long 6157 + 5588 6157 29000 564 3 0 5 chain 31242 chr6 170805979 + 22870469 22870849 L1PA7 6471 + 6086 6465 40935 45 1 0 167 11 11 156 chain 67152 chr6 170805979 + 22915692 22916431 L1PA3long 6157 + 5418 6157 24660 739 chain 68399 chr6 170805979 + 22950765 22951532 L1PA4 6152 + 5383 6152 24360 434 0 1 183 0 1 150 chain 191142 chr6 170805979 + 22980993 22983722 L1PA10 4194 + 181 2864 10060 8 2 0 10 3 0 8 2 0 9 11 7 9 2 0 9 5 4 5 1 0 5 0 3 14 2 0 15 1 0 7 41 16 4 1 0 22 2 0 20 1 0 5 42 15 19 0 1 7 1 0 32 5 20 27 16 8 132 0 1 37 1 0 738 0 1 219 1 0 21 7 9 116 2 1 250 7 11 101 4 11 45 0 1 42 0 4 378 3 4 10 1 0 236 0 1 5 chain 23013 chr6 170805979 + 22984266 22984565 L1PA8A 6298 + 5990 6291 52339 31 0 1 152 9 10 107 chain 24132 chr6 170805979 + 23000406 23000821 L1PA14 3548 + 3055 3456 50605 54 13 9 13 2 0 6 1 0 4 1 0 79 6 5 80 0 1 24 15 13 29 9 7 19 1 0 16 2 1 41 chain 13282 chr6 170805979 + 23008607 23008827 MER30 238 + 0 238 64657 12 24 29 62 8 24 62 3 0 49 chain 30471 chr6 170805979 + 23029011 23029414 LTR7 482 + 2 475 41604 67 4 37 7 0 5 106 8 40 211 chain 37555 chr6 170805979 + 23046869 23047653 LTR3B_ 500 + 19 500 36367 137 310 6 137 4 5 196 chain 539257 chr6 170805979 + 23058378 23064969 L1PA4 6152 + 3 6143 1384 139 8 24 309 2 1 449 4 0 307 5 4 177 6 5 416 466 0 102 0 4 145 0 1 2584 9 10 885 0 1 436 1 0 141 chain 42226 chr6 170805979 + 23106409 23106916 L1PA5 6144 + 5627 6134 33231 183 0 1 80 1 0 243 chain 6729 chr6 170805979 + 23123859 23123938 L1P2 5180 + 1542 1621 78543 79 chain 38449 chr6 170805979 + 23153104 23153556 L1PA6 6164 + 5685 6159 35759 286 0 21 152 0 1 14 chain 294160 chr6 170805979 + 23155793 23159414 HERVL-int 5654 + 1997 5654 7004 73 0 9 216 0 3 1204 0 4 145 0 6 156 23 22 41 1 2 686 2 0 302 16 20 49 1 7 283 1 0 182 0 1 22 0 1 101 0 1 12 0 4 105 chain 4421 chr6 170805979 + 23159414 23159553 MLT2A1 477 + 0 139 39894 139 chain 41935 chr6 170805979 + 23159559 23160067 MER9a2 513 + 0 513 33404 286 2 3 19 5 9 196 chain 11801 chr6 170805979 + 23160067 23160438 MLT2A1 477 + 139 477 39894 30 4 1 10 1 2 22 0 1 180 4 0 18 49 21 53 chain 264316 chr6 170805979 + 23163718 23168212 HERVK22-int 3844 + 0 3844 7844 43 3 0 114 12 37 112 16 17 248 0 3 292 14 14 88 0 2 5 9 7 764 0 10 581 2 1 256 0 10 7 11 1 112 6 0 323 1 0 71 1 0 7 7 6 11 1 0 36 1 0 20 11 9 30 4 0 10 1 0 43 2 0 16 143 105 22 855 229 81 24 23 78 chain 90778 chr6 170805979 + 23234981 23235987 L1PA3long 6157 + 2905 3911 19540 1006 chain 34823 chr6 170805979 + 23251922 23252363 L1PA8 5853 + 5418 5853 38141 146 1 0 44 2 0 70 2 1 9 1 0 52 2 1 19 1 0 62 0 1 30 chain 64899 chr6 170805979 + 23295412 23296300 LTR12 884 + 0 884 25216 91 2 0 134 0 2 28 25 0 36 0 2 23 12 12 27 0 22 332 1 0 27 2 1 23 2 1 123 chain 9111 chr6 170805979 + 23471356 23471454 L1PA2 6032 + 5934 6032 72320 98 chain 18718 chr6 170805979 + 23507736 23507944 L1PA3long 6157 + 5949 6157 57880 208 chain 34761 chr6 170805979 + 23507948 23508331 L1PA3long 6157 + 5774 6157 38180 383 chain 34448 chr6 170805979 + 23560604 23561090 MER41C 542 + 25 510 38398 24 0 1 41 17 15 198 2 1 9 4 5 191 chain 37419 chr6 170805979 + 23597921 23598393 L1PA5 6144 + 5660 6143 36467 75 1 12 242 0 8 9 8 1 125 2 1 10 chain 23660 chr6 170805979 + 23613994 23614277 L1PA7 6471 + 6101 6396 51339 127 0 2 67 2 12 87 chain 89235 chr6 170805979 + 23664994 23666016 L1PA5 6144 + 4739 5767 19817 567 0 3 83 0 3 372 chain 25176 chr6 170805979 + 23666503 23666821 THE1A 353 + 7 341 48997 56 0 14 33 1 0 122 0 3 106 chain 27531 chr6 170805979 + 23676851 23677148 AluYd8 298 + 0 297 45548 297 chain 10725 chr6 170805979 + 23693285 23693432 MER30 238 + 80 238 69001 25 4 18 69 3 0 46 chain 147362 chr6 170805979 + 23700893 23702512 L1PA3long 6157 + 4532 6152 12523 1310 0 1 309 chain 62065 chr6 170805979 + 23734236 23734939 L1PA5 6144 + 5432 6144 25857 40 2 1 193 0 6 138 0 1 227 0 3 103 chain 46162 chr6 170805979 + 23744498 23748499 L1PA8 5853 + 5194 5853 30981 298 0 1 69 1 0 46 5 3 65 4 3 9 3337 0 52 2 1 11 9 8 93 chain 5798 chr6 170805979 + 23745001 23745119 L1PA8 5853 + 5692 5810 81929 7 5 7 34 2 1 17 11 10 42 chain 5695 chr6 170805979 + 23748250 23748317 L1PA8 5853 + 5608 5675 82366 67 chain 100998 chr6 170805979 + 23757534 23758715 L1PA5 6144 + 4654 5848 18186 129 0 2 486 0 4 16 0 4 24 5 5 466 0 3 55 chain 308285 chr6 170805979 + 23776653 23780045 L1PA3long 6157 + 2759 6157 6652 796 0 1 1754 0 4 584 0 1 258 chain 68990 chr6 170805979 + 23793579 23794499 L1PA10 4194 + 3216 4143 24214 138 0 6 68 4 6 239 1 0 267 0 4 44 7 6 106 22 19 24 chain 79691 chr6 170805979 + 23798593 23799460 L1PA3long 6157 + 5290 6157 21697 867 chain 532573 chr6 170805979 + 23804049 23810068 L1PA3long 6157 + 0 6156 1728 127 0 4 22 0 1 69 2 1 211 1 2 89 4 0 181 0 7 62 0 128 496 9 0 926 1 0 926 0 4 679 0 1 568 0 4 1428 1 0 206 0 3 11 chain 27678 chr6 170805979 + 23810085 23810462 L1PA7 6471 + 6095 6467 45353 144 7 6 50 12 14 6 2 0 146 4 0 6 chain 324390 chr6 170805979 + 23817826 23821623 L1PA5 6144 + 2345 6144 6328 184 3 0 126 1 0 587 19 21 418 0 3 1613 0 4 397 2 0 174 15 15 144 1 0 113 chain 9623 chr6 170805979 + 23835866 23835986 MER85 139 + 4 134 71210 85 0 10 35 chain 37137 chr6 170805979 + 23837186 23837643 LTR2 463 + 0 463 36655 127 0 3 24 4 3 197 0 1 61 0 3 44 chain 72593 chr6 170805979 + 23846841 23847713 L1PA8 5853 + 3800 4681 23404 72 0 1 34 0 2 70 0 3 222 0 4 339 1 0 134 chain 20401 chr6 170805979 + 23893682 23893995 L1P4 1494 + 521 843 55881 81 15 18 62 5 11 83 1 2 8 1 0 57 chain 10087 chr6 170805979 + 23907417 23907561 L1PA10 4194 + 782 940 70222 104 1 0 5 1 0 5 3 19 25 chain 5255 chr6 170805979 + 23941277 23941346 MER53 195 + 3 67 84418 27 5 0 37 chain 40003 chr6 170805979 + 23971189 23971696 L1PA10 4194 + 3351 3861 34655 92 8 11 407 chain 64533 chr6 170805979 + 23991987 23992681 L1P1 4361 + 2466 3160 25303 694 chain 24943 chr6 170805979 + 23995415 23996026 L1PB1 5432 + 4816 5383 49363 179 12 13 34 7 0 8 1 0 4 68 60 24 2 1 5 1 0 12 2 0 3 2 0 9 2 0 49 27 25 37 2 1 11 79 62 17 1 0 13 chain 48103 chr6 170805979 + 24015407 24015981 L1PA7 6471 + 5886 6465 30259 98 0 4 122 1 2 353 chain 3441 chr6 170805979 + 24066365 24066408 MLT1D-int 1367 + 19 62 95727 43 chain 558432 chr6 170805979 + 24082847 24089001 L1PA3long 6157 + 4 6157 229 693 7 0 13 0 7 2310 1 0 240 2 1 2538 0 1 350 chain 13960 chr6 170805979 + 24190374 24190533 L1PA5 6144 + 5980 6138 63644 17 1 0 141 chain 521990 chr6 170805979 + 24198211 24204628 L1PA7 6471 + 6 6459 2183 161 6 4 205 1 0 153 1 0 512 1 0 312 2 3 413 0 4 361 0 2 125 1 0 82 0 1 45 0 9 112 0 1 127 9 0 114 0 4 186 1 3 266 0 1 332 0 4 24 0 9 25 0 1 6 1 0 148 3 6 46 14 16 174 1 4 474 0 4 8 6 0 919 2 0 155 0 2 53 2 0 259 0 1 515 0 8 54 chain 169633 chr6 170805979 + 24293486 24296228 L1PREC2 3366 + 519 2951 11120 90 0 3 139 0 3 265 0 3 92 292 0 49 0 3 5 3 0 120 0 2 6 3 0 11 1 0 144 0 2 94 9 8 87 3 7 118 0 1 16 6 0 280 0 5 138 17 14 50 1 0 162 24 28 19 4 1 100 14 12 42 2 0 114 2 0 54 2 1 43 8 4 14 77 61 22 chain 22135 chr6 170805979 + 24298991 24299384 L1PA16 3655 + 3246 3619 53651 44 18 16 39 1 0 64 2 3 120 1 0 26 31 26 11 7 0 8 5 0 16 chain 57687 chr6 170805979 + 24322221 24322968 MER4E 760 + 7 752 27059 16 0 1 127 22 25 76 1 2 31 9 2 82 0 2 63 1 0 142 1 0 176 chain 47034 chr6 170805979 + 24371614 24372139 L1PA4 6152 + 5130 5661 30643 180 0 2 166 0 4 179 chain 103623 chr6 170805979 + 24378984 24380191 L1PA6 6164 + 4942 6156 17860 206 1 8 159 1 0 186 0 1 654 chain 7304 chr6 170805979 + 24467775 24467862 MER4A 717 + 4 91 76652 87 chain 63391 chr6 170805979 + 24469112 24469788 L1PA2 6032 + 5353 6029 25546 676 chain 8530 chr6 170805979 + 24500383 24500501 L1MB3 1562 + 1301 1417 73623 49 2 1 15 1 0 51 chain 11627 chr6 170805979 + 24586105 24586238 MER4A 717 + 584 717 67522 133 chain 4391 chr6 170805979 + 24623717 24623776 L1MA4 2864 + 2747 2804 88935 20 2 0 37 chain 57127 chr6 170805979 + 24670953 24671620 L1PA6 6164 + 5496 6161 27222 658 2 0 7 chain 121892 chr6 170805979 + 24730991 24732563 THE1B-int 1605 + 0 1596 15205 430 0 25 259 2 0 5 10 12 363 10 12 144 10 6 282 0 1 57 chain 4505 chr6 170805979 + 24794970 24795060 LTR8 732 + 595 683 88293 30 25 23 35 chain 31033 chr6 170805979 + 24973162 24973932 L1PA16 3655 + 3106 3577 41099 73 7 8 11 10 15 40 315 13 24 3 1 118 2 1 167 chain 23951 chr6 170805979 + 24982748 24983187 LTR23 429 + 0 427 50863 91 69 60 129 1 0 35 18 19 20 14 11 62 chain 31951 chr6 170805979 + 24992350 24992860 L1PREC2 3366 + 2350 2859 40381 71 3 0 5 0 3 20 0 1 4 3 2 124 23 28 122 11 12 10 2 0 47 8 7 44 1 0 4 3 0 5 chain 18310 chr6 170805979 + 25021385 25021775 L1PB1 5432 + 5062 5422 58350 41 13 11 24 1 0 7 2 1 12 4 0 9 2 0 53 2 1 15 1 0 38 37 23 30 2 0 4 1 0 12 7 5 8 0 4 10 1 0 21 1 0 9 6 5 17 chain 26583 chr6 170805979 + 25126271 25126553 AluYk11 308 + 25 307 46852 282 chain 35402 chr6 170805979 + 25128932 25129383 MER4A1 472 + 0 472 37774 15 0 2 26 1 0 6 0 1 69 2 0 124 1 22 207 chain 198961 chr6 170805979 + 25133414 25136073 MER4-int 2692 + 1 2692 9745 10 1 0 25 2 0 12 2 3 38 0 1 24 1 0 4 3 1 275 9 10 82 7 9 59 1 2 76 0 5 22 2 0 62 3 0 11 0 5 151 3 0 4 3 0 26 0 1 210 7 23 62 6 7 30 1 0 165 2 1 25 2 7 22 0 6 19 1 0 51 6 4 202 1 0 27 1 0 198 0 1 303 1 0 212 0 11 187 chain 30374 chr6 170805979 + 25136095 25136497 MER4A1 472 + 22 456 41696 7 1 0 17 0 1 6 2 1 117 1 0 54 4 38 193 chain 49023 chr6 170805979 + 25157511 25158187 MER11A 1151 + 6 774 29944 33 19 118 21 8 0 52 1 0 64 4 0 38 0 2 109 0 1 94 0 1 144 2 4 87 chain 540988 chr6 170805979 + 25158197 25164309 L1PA5 6144 + 3 6128 1279 511 0 3 468 0 3 319 0 1 332 1 0 1366 0 1 675 3 0 663 0 4 926 0 4 248 0 1 281 2 3 73 1 0 243 chain 458261 chr6 170805979 + 25207650 25213362 L1PA8 5853 + 109 5853 4172 124 0 1 15 1 2 51 18 6 291 0 4 30 7 1 149 0 3 93 0 3 114 1 0 149 5 0 46 1 0 197 0 1 156 1 6 111 0 11 225 0 1 122 7 6 346 0 5 103 0 4 276 0 1 146 7 0 60 1 4 82 7 0 149 5 9 261 0 1 112 0 1 102 0 2 66 0 1 276 0 6 328 0 2 555 1 0 6 0 2 28 0 12 12 0 9 16 2 0 76 4 3 475 1 0 44 2 0 71 2 1 13 1 0 51 1 0 16 1 0 93 chain 13187 chr6 170805979 + 25262530 25262841 L1MA5A 2387 + 2100 2354 64802 7 1 0 50 2 0 30 9 0 26 59 17 19 0 2 45 1 0 7 11 14 13 7 1 9 2 1 13 chain 73347 chr6 170805979 + 25421220 25422030 L1PA3long 6157 + 5343 6157 23250 479 1 5 188 1 0 29 0 1 112 chain 22711 chr6 170805979 + 25502279 25502566 AluSg7 307 + 0 295 52814 13 4 7 83 0 2 26 0 1 132 0 2 29 chain 11814 chr6 170805979 + 25529656 25529784 AluYb8 318 + 190 318 67179 128 chain 7442 chr6 170805979 + 25594687 25594796 MER5A 189 + 47 155 76264 29 8 7 72 chain 51213 chr6 170805979 + 25806583 25807460 L1PB3 3668 + 2751 3590 29162 196 0 1 40 2 0 15 1 2 50 2 0 141 0 6 11 17 11 5 1 0 61 2 1 68 28 20 12 1 0 85 80 60 30 7 3 13 1 0 8 chain 37902 chr6 170805979 + 25848495 25848961 L1PB1 5432 + 4212 4683 36138 243 0 4 52 0 4 113 3 0 55 chain 27151 chr6 170805979 + 25897771 25898077 AluYa5 310 + 0 310 46044 14 0 2 130 1 0 56 0 1 8 0 1 6 0 1 91 chain 27178 chr6 170805979 + 25919425 25919727 AluYk4 311 + 0 309 46001 93 0 7 209 chain 27811 chr6 170805979 + 25945725 25946092 THE1B 368 + 2 368 45167 104 1 2 64 2 1 155 7 6 34 chain 27789 chr6 170805979 + 25955683 25956115 MER41A 554 + 173 554 45195 42 54 1 253 10 16 50 4 0 19 chain 37995 chr6 170805979 + 25981999 25982575 LTR14B 630 + 41 630 36077 122 1 0 109 24 59 60 64 43 196 chain 68065 chr6 170805979 + 25999230 26000000 LTR5_Hs 974 + 0 772 24442 121 0 2 649 chain 2879 chr6 170805979 + 26000000 26000033 LTR5 62 + 5 38 101005 33 chain 3097 chr6 170805979 + 26010336 26010404 MER77 626 + 381 456 98811 22 19 26 27 chain 30289 chr6 170805979 + 26075039 26075407 LTR2 463 + 0 373 41772 127 0 3 124 0 1 104 0 1 13 chain 415023 chr6 170805979 + 26076218 26081311 Harlequin-int 5206 + 127 5206 4957 5 0 3 9 9 0 22 1 0 120 0 4 7 14 10 47 4 1 207 0 1 105 1 0 10 1 0 124 0 3 920 0 1 892 9 17 11 7 27 8 20 0 97 4 12 227 0 7 28 0 2 855 1 0 107 4 0 503 30 3 684 chain 35647 chr6 170805979 + 26081311 26081760 LTR2 463 + 0 463 37634 127 0 3 93 0 10 36 1 2 192 chain 21980 chr6 170805979 + 26104996 26105266 AluSg7 307 + 2 275 53866 111 0 2 16 0 1 143 chain 37235 chr6 170805979 + 26177825 26178302 LTR2B 499 + 5 499 36596 7 0 1 61 3 0 37 3 22 175 0 1 10 1 0 180 chain 16952 chr6 170805979 + 26268437 26268656 LTR8 732 + 46 274 59860 111 7 13 31 0 3 70 chain 6939 chr6 170805979 + 26286525 26286597 tRNA-Met-i 72 + 0 72 77814 72 chain 6885 chr6 170805979 + 26299676 26299748 tRNA-Arg-CGA 73 + 0 72 78010 72 chain 23537 chr6 170805979 + 26320046 26320349 AluSp 311 + 36 311 51525 265 28 0 10 chain 6763 chr6 170805979 + 26322817 26322889 tRNA-Arg-CGA 73 + 0 72 78438 72 chain 7894 chr6 170805979 + 26327588 26327670 tRNA-Ser-TCY 82 + 0 82 75132 82 chain 4702 chr6 170805979 + 26328139 26328188 tRNA-Arg-CGY_ 50 + 0 49 87257 49 chain 85376 chr6 170805979 + 26433301 26434360 MER11B 1079 + 0 1079 20552 316 1 18 432 5 8 212 1 2 60 8 7 24 chain 26236 chr6 170805979 + 26489864 26490237 LTR7B 505 + 0 490 47368 107 1 11 53 18 86 32 1 0 22 0 41 89 14 13 36 chain 8030 chr6 170805979 + 26521207 26521290 tRNA-Leu-CTG 83 + 0 83 74811 83 chain 4702 chr6 170805979 + 26537497 26537546 tRNA-Arg-CGY_ 50 + 0 49 87256 49 chain 6881 chr6 170805979 + 26538053 26538126 tRNA-Val-GTG 73 + 0 73 78032 73 chain 6808 chr6 170805979 + 26553502 26553574 tRNA-Ala-GCG 72 + 0 72 78288 72 chain 3729 chr6 170805979 + 26554121 26554160 tRNA-Ile-ATT 40 + 0 39 93417 39 chain 6948 chr6 170805979 + 26555269 26555341 tRNA-Pro-CCY 72 + 0 72 77786 72 chain 4120 chr6 170805979 + 26556545 26556588 tRNA-Lys-AAG 49 + 0 43 90654 43 chain 3425 chr6 170805979 + 26568857 26568894 tRNA-Tyr-TAC 38 + 0 37 95863 37 chain 9845 chr6 170805979 + 26574583 26574716 MLT1A 405 + 246 377 70730 91 1 0 16 1 0 24 chain 3425 chr6 170805979 + 26577103 26577140 tRNA-Tyr-TAC 38 + 0 37 95862 37 chain 3029 chr6 170805979 + 26587954 26587992 MADE1 96 + 56 95 99505 13 0 1 25 chain 10042 chr6 170805979 + 26594051 26594181 MER65A 464 + 328 464 70328 30 0 2 81 0 4 19 chain 3556 chr6 170805979 + 26594873 26594910 tRNA-Tyr-TAC 38 + 0 37 94793 37 chain 10578 chr6 170805979 + 26632165 26632307 MER4E1 777 + 0 144 69268 14 3 5 125 chain 21395 chr6 170805979 + 26669729 26670075 MLT2A2 560 + 201 560 54638 5 0 2 198 71 82 72 chain 6519 chr6 170805979 + 26673361 26673434 tRNA-Ala-GCY 73 + 0 73 79279 73 chain 6650 chr6 170805979 + 26682486 26682559 tRNA-Ala-GCY 73 + 0 73 78814 73 chain 6528 chr6 170805979 + 26687256 26687329 tRNA-Ala-GCY 73 + 0 73 79244 73 chain 5193 chr6 170805979 + 26701482 26701537 tRNA-Met 55 + 0 55 84716 55 chain 6528 chr6 170805979 + 26705376 26705449 tRNA-Ala-GCY 73 + 0 73 79243 73 chain 6424 chr6 170805979 + 26730533 26730606 tRNA-Ala-GCY 73 + 0 73 79594 73 chain 11964 chr6 170805979 + 26739335 26739509 LTR66 600 + 427 600 66893 30 17 0 9 1 17 117 chain 5193 chr6 170805979 + 26743262 26743317 tRNA-Met 55 + 0 55 84715 55 chain 73813 chr6 170805979 + 26744674 26745618 LTR5_Hs 974 + 0 958 23139 59 0 1 146 0 1 251 1 5 193 0 1 119 7 7 34 13 14 66 1 7 54 chain 3729 chr6 170805979 + 26756551 26756590 tRNA-Ile-ATT 40 + 0 39 93416 39 chain 115907 chr6 170805979 + 26756704 26757958 L1PA2 6032 + 4778 6032 16255 1254 chain 5193 chr6 170805979 + 26766233 26766288 tRNA-Met 55 + 0 55 84714 55 chain 3607 chr6 170805979 + 26780621 26780660 tRNA-Ile-ATT 40 + 0 39 94369 39 chain 23509 chr6 170805979 + 26833662 26834021 THE1C 375 + 0 363 51577 51 19 21 36 1 0 16 0 20 10 17 1 195 1 0 13 chain 5846 chr6 170805979 + 26837052 26837120 L1MA7 2200 + 1871 1939 81707 68 chain 10772 chr6 170805979 + 26839240 26839459 L1MA5A 2387 + 2107 2295 68915 48 2 0 26 2 0 34 3 0 12 34 7 33 4 7 21 chain 46251 chr6 170805979 + 26840995 26841502 L1PA2 6032 + 5528 6032 30942 498 3 0 6 chain 125017 chr6 170805979 + 26843812 26845375 L1PA6 6164 + 4616 6162 14700 97 23 1 486 9 8 100 1 0 270 0 1 221 1 5 125 0 2 70 1 2 91 1 0 67 chain 27393 chr6 170805979 + 26878995 26879296 L1PA2 6032 + 5729 6030 45716 301 chain 103550 chr6 170805979 + 26893613 26895158 THE1B-int 1605 + 1 1599 17871 217 3 0 30 114 60 83 5 69 76 9 16 109 15 16 17 7 13 120 13 14 307 0 14 80 0 6 58 0 5 88 6 7 113 2 0 5 0 7 68 chain 8940 chr6 170805979 + 26895165 26895324 THE1B 368 + 2 169 72690 47 0 6 13 17 18 19 11 12 52 chain 4435 chr6 170805979 + 26903250 26903324 MER3 215 + 8 83 88697 14 9 10 51 chain 106306 chr6 170805979 + 26918609 26919768 L1PA3long 6157 + 4567 5726 17524 1159 chain 118759 chr6 170805979 + 26930592 26931903 L1PA3long 6157 + 4097 5408 15761 1311 chain 111208 chr6 170805979 + 26982553 26984049 L1PA8A 6298 + 4780 6292 16915 144 1 5 89 0 1 29 0 9 20 0 1 21 5 7 160 3 0 61 0 1 39 18 1 121 2 1 86 1 2 104 0 4 156 0 1 337 6 5 71 3 17 19 chain 28394 chr6 170805979 + 26987193 26987771 L1PB1 5432 + 4922 5404 44279 32 1 4 115 4 0 6 91 29 6 3 0 22 1 0 10 1 0 12 5 1 8 2 0 53 2 1 15 1 0 45 1 0 15 24 12 19 7 4 15 2 0 24 1 0 21 1 0 13 chain 524174 chr6 170805979 + 27008401 27014562 L1PA6 6164 + 0 6159 2081 195 0 1 37 16 0 277 1 0 281 1 1 39 3 0 592 8 13 887 2 3 229 0 1 166 0 1 231 0 1 16 1 0 213 0 1 6 1 0 718 1 6 450 0 4 346 1 0 600 4 0 196 0 1 151 0 3 350 1 2 141 chain 3656 chr6 170805979 + 27020345 27020383 tRNA-Ile-ATA 38 + 0 38 93953 38 chain 12119 chr6 170805979 + 27045722 27045969 LTR12C 1709 + 672 828 66638 30 41 0 92 50 0 34 chain 6826 chr6 170805979 + 27091741 27091813 tRNA-Pro-CCG 72 + 0 72 78220 72 chain 7772 chr6 170805979 + 27097305 27097387 tRNA-Ser-AGY 82 + 0 82 75434 82 chain 6496 chr6 170805979 + 27158128 27158198 tRNA-His-CAY_ 70 + 0 70 79367 70 chain 6408 chr6 170805979 + 27162276 27162344 tRNA-Thr-ACY_ 74 + 6 74 79644 68 chain 43234 chr6 170805979 + 27187543 27188070 LTR14 556 + 30 556 32624 435 1 0 91 chain 25430 chr6 170805979 + 27190816 27191122 AluYc 301 + 0 296 48582 114 0 2 172 12 0 8 chain 43113 chr6 170805979 + 27195721 27196279 LTR14 556 + 0 556 32705 465 1 0 36 21 20 35 chain 26306 chr6 170805979 + 27205025 27205481 MER31A 484 + 0 458 47260 82 0 1 34 13 30 11 17 0 101 0 1 43 1 0 6 7 4 57 44 48 40 chain 7472 chr6 170805979 + 27209848 27209928 tRNA-Ser-TCG 80 + 0 80 76195 80 chain 23814 chr6 170805979 + 27213183 27213478 AluSp 311 + 4 298 51077 140 1 0 154 chain 4702 chr6 170805979 + 27215172 27215221 tRNA-Arg-CGY_ 50 + 0 49 87255 49 chain 29872 chr6 170805979 + 27232934 27233253 AluYb9 318 + 0 318 42164 200 1 0 118 chain 4453 chr6 170805979 + 27235508 27235557 tRNA-Val-GTY 66 + 0 49 88596 49 chain 3467 chr6 170805979 + 27273959 27273998 tRNA-Ile-ATT 40 + 0 39 95485 39 chain 35951 chr6 170805979 + 27285111 27285584 LTR2B 499 + 9 499 37439 5 1 0 57 2 1 39 0 19 176 0 1 10 1 0 182 chain 3140 chr6 170805979 + 27293891 27293926 tRNA-Ile-ATT 40 + 0 35 98473 35 chain 3775 chr6 170805979 + 27295432 27295475 tRNA-Gln-CAG 43 + 0 43 93035 43 chain 7641 chr6 170805979 + 27297995 27298077 tRNA-Ser-AGY 82 + 0 82 75771 82 chain 7009 chr6 170805979 + 27303010 27303168 MER2 342 + 6 172 77571 26 1 0 14 42 49 13 2 4 60 chain 5024 chr6 170805979 + 27326703 27326763 MER49 923 + 144 204 85548 60 chain 3784 chr6 170805979 + 27466230 27466278 MLT1D 503 + 296 344 92955 31 0 1 7 1 0 9 chain 7894 chr6 170805979 + 27478811 27478893 tRNA-Ser-TCY 82 + 0 82 75131 82 chain 3638 chr6 170805979 + 27479673 27479712 tRNA-Asp-GAY 44 + 0 39 94117 39 chain 7894 chr6 170805979 + 27495813 27495895 tRNA-Ser-TCY 82 + 0 82 75130 82 chain 7894 chr6 170805979 + 27503038 27503120 tRNA-Ser-TCY 82 + 0 82 75129 82 chain 3638 chr6 170805979 + 27503743 27503782 tRNA-Asp-GAY 44 + 0 39 94116 39 chain 3897 chr6 170805979 + 27519528 27519571 tRNA-Gln-CAG 43 + 0 43 92158 43 chain 7632 chr6 170805979 + 27532207 27532289 tRNA-Ser-TCY 82 + 0 82 75794 82 chain 7885 chr6 170805979 + 27545688 27545770 tRNA-Ser-TCA_ 82 + 0 82 75168 82 chain 3547 chr6 170805979 + 27562183 27562220 tRNA-Arg-AGA 37 + 0 37 94877 37 chain 31558 chr6 170805979 + 27568066 27569595 MER4A 717 + 0 711 40696 25 1 0 18 0 1 78 7 8 42 0 83 11 4 0 13 0 1 7 3 0 14 7 9 60 39 79 21 23 30 58 628 0 36 331 14 103 chain 10690 chr6 170805979 + 27600495 27600639 LTR43 600 + 192 336 69061 65 4 0 6 0 4 69 chain 3656 chr6 170805979 + 27631420 27631458 tRNA-Ile-ATA 38 + 0 38 93952 38 chain 32134 chr6 170805979 + 27633173 27633590 LTR3B 427 + 11 424 40238 98 5 6 13 0 1 203 17 11 81 chain 5646 chr6 170805979 + 27642259 27642351 L1MB1 2102 + 1279 1381 82576 15 9 19 68 chain 11059 chr6 170805979 + 27648070 27648211 LTR8 732 + 582 725 68470 69 0 2 72 chain 132382 chr6 170805979 + 27652929 27654404 SVA_B 1603 + 48 1603 13792 804 1 0 13 1 0 63 0 78 160 1 5 432 chain 3485 chr6 170805979 + 27668582 27668621 tRNA-Ile-ATT 40 + 0 39 95350 39 chain 22462 chr6 170805979 + 27681437 27681732 AluSp 311 + 0 289 53173 48 6 5 72 8 3 161 chain 3292 chr6 170805979 + 27682709 27682748 tRNA-Val-GTG 73 + 1 40 97094 39 chain 23144 chr6 170805979 + 27683748 27684024 AluSp 311 + 0 292 52155 111 0 17 147 1 0 17 chain 3729 chr6 170805979 + 27688187 27688226 tRNA-Ile-ATT 40 + 0 39 93415 39 chain 6859 chr6 170805979 + 27726693 27726767 tRNA-Thr-ACY_ 74 + 0 74 78109 74 chain 36864 chr6 170805979 + 27773906 27774370 LTR2 463 + 0 463 36836 154 4 2 208 11 12 87 chain 12599 chr6 170805979 + 27776073 27776245 MER41G 495 + 326 495 65799 8 0 3 102 6 0 56 chain 6725 chr6 170805979 + 27777884 27777956 tRNA-Met-i 72 + 0 72 78560 72 chain 27153 chr6 170805979 + 27779152 27779525 MER61-int 3695 + 608 1145 46039 30 0 96 82 0 48 219 12 29 6 0 3 24 chain 40201 chr6 170805979 + 27797167 27797746 MER4A 717 + 125 717 34519 125 4 11 7 0 5 85 5 6 15 19 20 89 22 11 8 0 3 30 0 1 28 0 5 59 0 1 83 chain 5035 chr6 170805979 + 27859141 27859257 MER2 342 + 143 261 85488 15 21 22 35 13 14 32 chain 6907 chr6 170805979 + 27870432 27870522 MER30B 195 + 101 191 77931 90 chain 28636 chr6 170805979 + 27875874 27876179 AluYa5 310 + 0 304 43893 132 1 0 172 chain 41417 chr6 170805979 + 27882760 27883275 MER41A 554 + 0 530 33725 48 0 1 138 0 10 208 0 4 121 chain 54098 chr6 170805979 + 27899681 27900456 MER4E1 777 + 0 777 28192 17 0 3 130 2 0 39 2 0 41 12 9 94 0 19 19 3 0 28 2 1 17 0 1 8 4 12 105 7 0 6 26 11 140 10 14 63 chain 68881 chr6 170805979 + 27943381 27944148 L1HS 6032 + 620 1386 24237 122 1 0 644 chain 9630 chr6 170805979 + 27956575 27956767 L1PB1 5432 + 5236 5422 71195 22 8 22 20 3 0 12 9 0 14 3 1 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 chain 31392 chr6 170805979 + 28004339 28004837 LTR38C 690 + 15 486 40818 248 24 7 64 18 30 8 12 0 21 17 7 86 chain 22530 chr6 170805979 + 28006806 28007101 AluSc 308 + 8 293 53071 141 15 6 101 1 0 37 chain 559812 chr6 170805979 + 28020760 28026912 L1PA3long 6157 + 1 6157 176 964 0 1 920 0 1 2302 0 1 828 0 1 798 2 1 51 0 1 287 chain 38044 chr6 170805979 + 28079856 28080354 LTR10A 586 + 0 536 36038 58 8 17 66 1 0 56 0 29 71 4 3 216 0 2 18 chain 187632 chr6 170805979 + 28100807 28103236 L1PA8 5853 + 3421 5853 10231 11 0 1 4 1 0 202 0 3 52 0 1 223 1 0 138 0 4 40 0 1 4 1 0 110 11 9 24 0 1 177 1 0 20 2 0 561 0 2 76 16 15 133 1 0 4 0 5 297 2 0 25 1 0 44 2 0 51 1 0 4 30 32 67 1 0 91 chain 3886 chr6 170805979 + 28106166 28106210 MER110A 451 + 41 85 92250 44 chain 68401 chr6 170805979 + 28106443 28107198 L1PA3long 6157 + 5400 6156 24357 418 0 1 337 chain 7763 chr6 170805979 + 28213036 28213118 tRNA-Ser-AGY 82 + 0 82 75453 82 chain 22128 chr6 170805979 + 28257184 28257543 L1PA8 5853 + 5486 5845 53658 36 1 0 38 13 12 36 2 0 6 0 4 60 2 1 6 0 7 8 8 4 36 2 1 19 1 0 85 chain 11446 chr6 170805979 + 28330493 28330663 Tigger4a 237 + 56 228 67839 115 2 1 5 5 0 7 0 7 6 0 1 30 chain 18802 chr6 170805979 + 28340290 28340646 THE1C 375 + 0 363 57779 44 0 3 20 1 15 9 14 0 22 12 32 7 16 0 9 0 1 14 0 2 8 16 12 29 6 7 129 chain 2947 chr6 170805979 + 28410273 28410304 U2 167 + 0 31 100405 31 chain 86816 chr6 170805979 + 28491046 28492049 LTR13 1007 + 0 1007 20258 304 1 0 71 10 11 537 0 4 80 chain 133923 chr6 170805979 + 28501514 28503131 SVA_B 1603 + 7 1602 13663 15 29 0 17 0 2 537 0 1 355 34 0 6 3 42 32 1 0 588 chain 100693 chr6 170805979 + 28511657 28513034 LTR12C 1709 + 0 1700 18216 278 5 14 46 0 43 82 5 6 181 0 278 184 1 0 4 4 2 106 11 4 32 0 2 257 25 3 107 10 32 39 chain 3656 chr6 170805979 + 28537589 28537627 tRNA-Ile-ATA 38 + 0 38 93951 38 chain 70615 chr6 170805979 + 28546994 28548184 L1PB1 5432 + 4300 5422 23841 163 47 13 148 9 6 72 4 7 395 19 10 24 1 0 6 1 0 12 2 0 3 2 0 10 2 0 51 18 16 13 7 10 20 2 1 16 68 54 20 1 0 23 1 0 11 1 0 18 chain 5562 chr6 170805979 + 28589378 28589448 tRNA-Gln-CAA 69 + 0 69 82975 55 2 1 13 chain 19388 chr6 170805979 + 28599434 28599775 THE1B 368 + 0 368 57142 44 24 39 24 10 11 54 1 0 24 1 0 5 29 42 125 chain 6713 chr6 170805979 + 28607155 28607227 tRNA-Ala-GCY_ 72 + 0 72 78602 72 chain 45120 chr6 170805979 + 28607908 28608446 LTR14 556 + 2 556 31514 208 0 8 245 1 0 7 4 13 73 chain 563438 chr6 170805979 + 28621243 28627390 L1PA3long 6157 + 12 6157 123 1624 7 1 276 0 1 2030 0 1 1362 0 1 13 0 1 835 chain 6930 chr6 170805979 + 28643444 28643516 tRNA-Ala-GCG 72 + 0 72 77851 72 chain 24444 chr6 170805979 + 28650974 28651258 AluSq10 312 + 8 293 50108 253 0 1 31 chain 18417 chr6 170805979 + 28653847 28654144 Tigger3b 1229 + 648 945 58212 49 3 1 7 0 4 56 19 20 96 14 11 53 chain 4764 chr6 170805979 + 28660174 28660246 MLT2D 439 + 52 128 86893 36 1 5 35 chain 3071 chr6 170805979 + 28683152 28683186 LTR5_Hs 974 + 783 817 99097 34 chain 498549 chr6 170805979 + 28683411 28691189 HERVK-int 6823 + 0 6561 3180 5 1 0 12 4 2 23 1 0 20 1 0 12 1 0 26 1 0 21 1 0 12 2 0 322 1 0 159 0 1 4 1 0 37 10 8 24 1 0 18 100 0 7 0 3 303 6 5 380 1 0 52 1 0 37 22 36 256 0 2 9 28 33 7 0 1 179 3 6 374 0 1 331 0 3 76 6 7 226 11 12 4 1 0 17 8 0 799 981 0 1083 3 0 83 7 0 476 1 0 14 1 0 184 0 2 11 1 0 23 1 0 42 0 1 57 1 0 36 1 0 122 1 0 51 3 0 5 1 0 8 4 2 73 2 0 12 1 0 21 17 11 11 1 0 20 2 0 3 1 0 8 1 0 5 172 101 9 2 0 12 1 0 14 6 4 10 3 0 28 40 29 10 19 12 8 1 0 5 1 0 26 1 0 4 1 0 12 35 26 15 chain 6713 chr6 170805979 + 28710588 28710660 tRNA-Ala-GCY_ 72 + 0 72 78601 72 chain 6975 chr6 170805979 + 28719703 28719775 tRNA-Ala-GCY_ 72 + 0 72 77691 72 chain 6654 chr6 170805979 + 28726017 28726091 tRNA-Thr-ACY_ 74 + 0 74 78802 74 chain 6181 chr6 170805979 + 28729314 28729386 tRNA-Ala-GCY_ 72 + 0 72 80426 72 chain 6160 chr6 170805979 + 28747743 28747816 tRNA-Lys-AAA 73 + 0 73 80496 73 chain 6258 chr6 170805979 + 28764386 28764455 tRNA-Phe-TTY 73 + 0 69 80144 69 chain 43648 chr6 170805979 + 28776601 28777213 LTR71B 605 + 0 595 32356 127 61 52 173 3 1 163 6 0 79 chain 2947 chr6 170805979 + 28796881 28796912 U2 167 + 0 31 100404 31 chain 193658 chr6 170805979 + 28829982 28832240 L1PA6 6164 + 3939 6162 9945 423 0 4 283 1 0 679 10 0 429 24 0 396 4 0 9 chain 405793 chr6 170805979 + 28850220 28854908 L1PA5 6144 + 1436 6129 5076 664 0 3 67 2 0 42 1 0 101 9 7 876 1 0 1145 0 4 415 0 1 967 0 1 190 0 1 72 5 6 131 chain 8544 chr6 170805979 + 28857876 28857979 MER57A1 433 + 325 428 73584 103 chain 2737 chr6 170805979 + 28865056 28865134 MER39 703 + 449 528 102071 17 35 36 26 chain 7021 chr6 170805979 + 28881387 28881460 tRNA-Arg-CGG 73 + 0 73 77529 73 chain 8044 chr6 170805979 + 28941052 28941158 tRNA-Leu-TTG 101 + 0 101 74769 40 2 0 9 6 3 49 chain 4220 chr6 170805979 + 28944574 28944618 tRNA-Met_ 45 + 0 44 90011 44 chain 6881 chr6 170805979 + 28951028 28951101 tRNA-Lys-AAA 73 + 0 73 78029 73 chain 139019 chr6 170805979 + 28957662 28959364 LTR12C 1709 + 0 1709 13187 104 5 4 250 0 1 328 0 1 149 1 0 240 0 6 28 1 0 6 2 0 107 0 4 481 chain 383542 chr6 170805979 + 28961507 28968158 L1PB1 5432 + 34 5424 5418 18 1 2 250 1 2 258 299 0 244 0 2 168 1 0 107 0 1 142 0 2 86 341 332 175 1 0 458 0 2 210 7 0 53 0 4 280 624 0 309 0 1 28 7 0 190 0 1 124 1 5 122 1 3 113 5 6 107 10 14 284 0 2 99 0 1 266 1 2 110 14 9 81 0 1 96 1 0 99 2 1 22 0 1 176 1 2 9 3 0 13 8 7 13 1 0 9 343 13 51 2 1 11 3 13 36 1 0 12 0 6 13 48 34 24 1 0 21 1 0 13 2 1 15 1 0 4 chain 6975 chr6 170805979 + 28982198 28982270 tRNA-Glu-GAG_ 72 + 0 72 77698 72 chain 20433 chr6 170805979 + 28987850 28988085 AluSp 311 + 5 239 55852 106 2 1 127 chain 7808 chr6 170805979 + 28989001 28989083 tRNA-Leu-CTY 82 + 0 82 75359 82 chain 8214 chr6 170805979 + 29010384 29010618 L1MC1 2226 + 1918 2098 74375 61 18 13 47 93 44 15 chain 17255 chr6 170805979 + 29015557 29015862 LTR12C 1709 + 778 1086 59517 51 0 81 133 78 0 43 chain 7108 chr6 170805979 + 29046512 29046716 L1MA10 1535 + 1329 1501 77236 59 42 25 24 51 36 28 chain 45587 chr6 170805979 + 29068461 29069345 L1PB1 5432 + 3934 4505 31269 385 307 0 20 7 0 78 0 1 87 chain 3758 chr6 170805979 + 29069345 29069430 L1PB1 5432 + 4506 4585 93146 16 7 11 18 2 1 14 9 0 19 chain 17296 chr6 170805979 + 29069431 29069687 L1PB1 5432 + 4585 4838 59467 41 3 0 143 1 0 28 0 1 7 16 16 17 chain 40253 chr6 170805979 + 29069687 29070312 L1PB1 5432 + 4839 5414 34475 264 1 2 11 21 0 22 1 0 9 1 0 11 15 9 52 1 0 10 11 10 42 1 0 17 15 0 29 7 4 15 2 0 24 1 0 22 0 3 9 1 0 10 chain 20632 chr6 170805979 + 29078774 29079061 L1PA7 6471 + 6177 6466 55590 96 0 1 34 15 16 122 8 8 12 chain 30098 chr6 170805979 + 29156253 29156612 L1P1 4361 + 3334 3691 41956 349 2 0 8 chain 4048 chr6 170805979 + 29163618 29163661 L1PA2 6032 + 5725 5768 91096 43 chain 38261 chr6 170805979 + 29187043 29187525 MER9a3 513 + 0 485 35872 18 0 2 86 4 5 142 6 5 175 0 1 51 chain 3371 chr6 170805979 + 29192107 29192144 L1PA15 4387 + 2264 2301 96386 37 chain 3383 chr6 170805979 + 29201818 29201853 MER52A 1651 + 795 830 96272 35 chain 75988 chr6 170805979 + 29217268 29218354 THE1C-int 1605 + 497 1598 22580 176 94 88 24 3 11 151 9 8 218 1 11 110 0 3 97 0 1 106 0 1 37 1 0 59 chain 9622 chr6 170805979 + 29233474 29233580 L1PA2 6032 + 5926 6032 71218 106 chain 28152 chr6 170805979 + 29253791 29254249 MER4A1 472 + 0 472 44633 14 9 11 16 0 7 132 51 52 159 10 14 67 chain 30647 chr6 170805979 + 29262994 29263492 LTR19A 502 + 0 502 41428 71 0 1 61 0 1 52 38 1 15 0 36 73 1 2 63 45 46 38 0 1 41 chain 517599 chr6 170805979 + 29273448 29279327 L1PA4 6152 + 2 5881 2389 125 14 0 15 10 24 252 0 3 6 4 1 14 6 7 795 8 6 1097 0 1 4 1 0 1692 0 1 1836 chain 182345 chr6 170805979 + 29282176 29284392 L1PA7 6471 + 4233 6467 10481 443 0 4 275 1 0 367 0 1 299 0 2 53 9 1 377 0 4 126 10 11 123 1 16 132 chain 4686 chr6 170805979 + 29296125 29296180 MER52D 1964 + 1150 1205 87353 55 chain 32612 chr6 170805979 + 29296433 29296877 LTR7 482 + 0 476 39853 101 15 14 110 4 3 39 0 31 21 0 2 98 13 14 43 chain 90202 chr6 170805979 + 29299053 29300063 L1PA4 6152 + 4169 5186 19647 179 0 4 57 0 1 380 0 2 394 chain 26512 chr6 170805979 + 29340667 29341029 THE1D 372 + 0 372 46966 35 2 0 33 1 11 111 0 3 125 0 1 21 2 0 32 chain 446739 chr6 170805979 + 29360190 29366318 L1PA8 5853 + 108 5852 4442 189 23 11 128 0 1 11 8 12 210 1 2 94 25 16 189 0 6 227 20 20 275 1 0 6 0 1 43 2 1 284 0 1 30 3 0 152 3 1 195 0 1 348 0 1 4 12 0 641 0 6 6 22 15 75 0 1 263 0 2 115 23 25 247 0 1 132 10 11 263 1 0 37 318 0 146 45 10 255 0 1 55 10 4 127 5 4 553 1 0 46 2 0 57 0 1 12 2 1 13 7 6 42 2 1 19 1 0 92 chain 169894 chr6 170805979 + 29406554 29408567 L1PA7 6471 + 4459 6470 11110 1038 2 1 122 1 4 379 0 2 217 7 1 247 chain 2947 chr6 170805979 + 29454905 29454936 U2 167 + 0 31 100403 31 chain 53120 chr6 170805979 + 29474075 29474671 L1PA4 6152 + 5543 6138 28532 349 1 0 246 chain 3755 chr6 170805979 + 29539788 29539832 MER81 114 + 1 45 93185 44 chain 64720 chr6 170805979 + 29558213 29558989 LTR17 781 + 0 781 25261 256 0 1 70 0 1 101 1 2 83 0 1 56 0 1 209 chain 3823 chr6 170805979 + 29592604 29592679 LTR39 781 + 464 539 92696 31 7 8 23 4 3 10 chain 4874 chr6 170805979 + 29595343 29595402 Tigger2b_Pri 1066 + 52 112 86304 22 0 1 37 chain 4701 chr6 170805979 + 29614764 29614834 L1MC1 2226 + 2129 2196 87266 6 1 0 17 1 0 32 1 0 12 chain 4440 chr6 170805979 + 29652165 29652237 MER45C 884 + 80 153 88662 53 7 8 12 chain 22951 chr6 170805979 + 29679607 29679886 AluSp 311 + 0 284 52442 19 0 1 83 0 4 177 chain 11740 chr6 170805979 + 29691157 29691488 L1PB1 5432 + 5120 5424 67336 18 1 0 9 16 11 9 2 0 52 1 0 18 24 23 20 1 0 16 32 21 10 4 5 14 2 0 6 10 10 8 1 0 21 1 0 10 1 0 19 1 0 4 chain 175297 chr6 170805979 + 29717930 29720276 SVA_E 1901 + 5 1901 10815 148 1 0 664 446 0 110 3 0 974 chain 20305 chr6 170805979 + 29718744 29719165 SVA_E 1901 + 817 1015 33612 26 1 0 80 222 0 92 chain 10601 chr6 170805979 + 29718851 29719045 SVA_E 1901 + 969 1167 47538 5 1 0 41 7 13 67 1 0 72 chain 2449 chr6 170805979 + 29719045 29719073 SVA_E 1901 + 1118 1147 89040 16 0 1 12 chain 8662 chr6 170805979 + 29750370 29750471 HY3 101 + 0 101 73316 101 chain 57300 chr6 170805979 + 29774816 29775626 Charlie9 784 + 0 784 27158 33 1 0 10 0 1 110 1 0 41 0 1 256 10 6 4 1 0 8 1 0 4 1 0 4 1 0 6 5 0 5 1 0 4 1 0 15 13 0 184 0 2 90 chain 6716 chr6 170805979 + 29775694 29775783 L1PA10 4194 + 4064 4150 78587 53 3 0 33 chain 496321 chr6 170805979 + 29779787 29785823 L1PA6 6164 + 13 6153 3253 99 1 0 4 16 3 82 0 1 289 1 2 16 2 1 116 0 1 301 0 25 222 4 13 1144 1 2 855 0 1 79 0 8 28 0 1 645 1 2 415 0 4 110 0 2 423 11 9 131 5 7 202 0 60 12 0 1 502 0 1 110 0 2 209 chain 55289 chr6 170805979 + 29786042 29786870 Charlie9 784 + 0 784 27782 32 0 1 119 1 0 35 13 7 120 10 9 134 15 4 9 1 0 8 1 0 6 5 0 8 3 1 10 22 5 276 chain 4778 chr6 170805979 + 29786943 29787039 L1PA10 4194 + 4069 4159 86809 7 3 0 27 6 7 7 3 0 33 1 0 9 chain 3063 chr6 170805979 + 29818401 29818445 LTR16B2 458 + 159 204 99202 11 1 2 32 chain 58152 chr6 170805979 + 29821077 29821902 Charlie9 784 + 0 784 26922 32 0 1 150 16 0 19 9 10 178 0 8 58 8 0 5 3 0 9 1 0 7 2 0 7 1 0 9 1 0 10 20 5 29 1 0 179 3 0 68 chain 6917 chr6 170805979 + 29832431 29832531 Charlie12 129 + 30 129 77902 29 6 7 31 1 0 5 1 0 27 chain 36071 chr6 170805979 + 29845346 29845896 LTR10F 562 + 0 535 37364 111 0 28 89 0 3 31 83 37 182 0 1 16 3 2 35 chain 33646 chr6 170805979 + 29882186 29882650 Charlie9 784 + 0 457 38966 24 0 1 6 0 1 44 0 1 75 1 0 35 15 7 134 2 1 128 chain 51116 chr6 170805979 + 29919785 29920615 Charlie9 784 + 0 784 29189 30 1 2 122 1 0 12 39 28 78 2 1 5 0 1 25 26 30 123 6 0 4 4 0 9 1 0 6 3 1 7 5 0 8 3 1 10 26 5 198 1 3 75 chain 3049 chr6 170805979 + 29931714 29931749 MER30B 195 + 16 51 99317 35 chain 101320 chr6 170805979 + 29932087 29933753 SVA_A 1864 + 20 1864 18150 27 5 0 46 1 12 68 6 4 248 0 39 116 13 124 57 3 2 57 20 17 20 88 0 28 1 0 24 54 1 59 1 38 13 104 1 19 4 225 50 4 1 29 0 16 123 3 1 362 0 4 13 chain 3274 chr6 170805979 + 29932774 29932862 SVA_A 1864 + 557 596 68589 15 56 7 17 chain 33565 chr6 170805979 + 29937032 29937489 Charlie9 784 + 0 453 39035 24 7 9 121 1 0 12 0 1 20 12 7 133 1 0 126 chain 3049 chr6 170805979 + 29946802 29946837 MER30B 195 + 16 51 99316 35 chain 106232 chr6 170805979 + 29962939 29964257 L1PA7 6471 + 5179 6461 17539 422 0 5 8 1 0 338 9 1 29 0 1 153 0 1 62 39 3 41 0 2 216 chain 147893 chr6 170805979 + 29978882 29980516 L1PA3long 6157 + 4508 6142 12492 1634 chain 166722 chr6 170805979 + 30025650 30028207 L1PB1 5432 + 3093 5360 11291 170 0 1 275 0 3 194 8 1 20 1 0 205 5 6 347 0 1 124 1 0 64 1 2 120 4 0 218 275 0 67 7 6 41 10 3 53 0 2 81 0 24 17 1 0 8 1 0 12 5 1 9 11 9 43 2 1 15 1 0 44 1 0 16 1 0 6 59 44 14 chain 4007 chr6 170805979 + 30119793 30119844 MLT2D 439 + 4 55 91403 51 chain 3918 chr6 170805979 + 30123340 30123394 MER53 195 - 12 65 91991 6 1 0 47 chain 70311 chr6 170805979 + 30139878 30140716 L1PA7 6471 + 5617 6457 23919 152 0 1 537 8 9 141 chain 4035 chr6 170805979 + 30151255 30151384 MIR 256 + 54 195 91191 19 65 77 45 chain 414005 chr6 170805979 + 30247973 30252745 L1PA5 6144 + 607 5511 4973 5 0 2 77 7 0 72 0 128 157 1 0 5 0 1 2110 1 0 342 1 2 174 0 1 658 0 4 27 0 2 919 0 1 28 0 1 188 chain 4719 chr6 170805979 + 30356530 30356587 MER20 218 + 98 155 87141 57 chain 126025 chr6 170805979 + 30385219 30387005 L1PB2 3958 + 1118 2874 14553 85 0 1 50 1 0 25 6 7 55 0 2 125 6 9 105 5 4 11 5 4 43 1 4 121 0 1 373 7 8 167 4 5 111 1 2 46 54 12 368 0 1 11 chain 98791 chr6 170805979 + 30407105 30408342 THE1A-int 1579 + 341 1579 18440 851 1 2 385 chain 79160 chr6 170805979 + 30411304 30412251 LTR13_ 950 + 0 950 21820 579 2 1 277 0 4 89 chain 201453 chr6 170805979 + 30425363 30428405 L1PA11 4918 + 1644 4517 9665 153 1 0 15 5 2 306 0 4 136 1 5 48 0 1 204 0 3 214 4 7 375 1 8 11 32 155 42 1 5 62 1 5 105 2 0 152 320 0 34 1 0 89 5 6 384 0 1 152 5 0 65 2 1 13 12 11 51 7 21 18 4 0 9 chain 509688 chr6 170805979 + 30430289 30436422 L1PA6 6164 + 0 6159 2785 128 14 0 70 3 4 307 2 1 418 0 25 222 4 13 501 1 0 643 1 2 776 3 0 79 0 1 435 0 1 77 3 1 975 8 7 771 9 10 17 0 1 512 13 14 77 0 7 64 chain 38906 chr6 170805979 + 30471676 30472195 L1PBa 3878 + 891 1420 35424 63 4 8 22 1 6 97 0 1 4 3 2 277 3 4 45 chain 200643 chr6 170805979 + 30473865 30479555 L1PB1 5432 + 2253 5422 9704 183 2 3 11 3 2 46 1 2 322 2435 247 210 304 0 332 0 2 27 0 1 79 3 0 6 9 14 623 24 23 100 0 1 16 0 1 50 2 4 68 3 0 55 0 1 32 2 0 88 5 4 189 32 32 71 19 17 19 1 0 10 1 0 13 6 2 9 2 0 52 2 1 16 6 5 37 2 1 16 2 0 10 5 1 5 5 0 14 26 21 23 1 0 22 1 0 12 1 0 11 1 0 7 chain 135740 chr6 170805979 + 30474489 30475999 SVA_D 2077 + 42 2076 13463 570 1 0 184 0 40 80 1 490 71 4 0 599 chain 10465 chr6 170805979 + 30485076 30485329 L1PB1 5432 + 5023 5219 69480 75 58 10 6 1 0 24 8 6 14 5 1 9 4 2 49 chain 9482 chr6 170805979 + 30485330 30485566 L1PB1 5432 + 5219 5430 71518 18 2 1 42 1 0 16 4 0 15 9 0 15 9 6 11 18 16 9 3 2 23 1 0 11 1 0 14 1 0 8 1 0 4 chain 35359 chr6 170805979 + 30514303 30515077 MER4A1 472 + 0 472 37797 99 1 3 29 0 1 45 307 2 293 chain 15658 chr6 170805979 + 30518019 30518571 LTR12D 1347 + 226 776 61456 38 138 320 109 202 18 65 chain 3617 chr6 170805979 + 30518304 30518345 LTR12D 1347 + 652 693 76136 41 chain 3878 chr6 170805979 + 30518345 30518396 LTR12D 1347 + 502 662 80789 22 0 109 29 chain 2014 chr6 170805979 + 30518571 30518595 LTR12D 1347 + 728 752 94355 24 chain 498601 chr6 170805979 + 30520820 30526972 L1PA6 6164 + 13 6162 3177 369 38 32 4 0 1 30 19 0 7 0 4 107 8 7 213 0 17 378 0 3 668 0 1 177 6 0 153 7 9 141 2 1 16 32 22 469 1 3 512 0 1 231 76 76 49 0 1 229 1 0 48 7 9 507 0 2 384 1 2 335 0 1 83 1 0 367 0 5 313 0 8 8 2 1 6 7 0 135 1 0 4 chain 8341 chr6 170805979 + 30539258 30539369 L1MA7 2200 + 1520 1630 74057 33 1 0 77 chain 20517 chr6 170805979 + 30589383 30589619 AluY 311 + 62 299 55766 70 0 1 166 chain 10228 chr6 170805979 + 30842843 30843075 MER49 923 + 597 828 69951 53 23 25 5 2 0 75 53 52 21 chain 6615 chr6 170805979 + 30843343 30843593 MER61C 433 + 32 354 78922 8 2 0 25 21 111 13 0 1 5 19 15 23 62 64 12 14 0 6 1 0 39 chain 19529 chr6 170805979 + 30864249 30864493 7SK 245 + 0 245 56988 79 1 2 164 chain 72555 chr6 170805979 + 30868807 30869876 MER11A 1151 + 0 1137 23421 77 0 8 116 0 3 26 0 4 60 0 11 11 37 0 164 17 20 32 0 12 138 6 9 11 3 4 37 0 4 69 6 33 13 0 32 97 8 7 87 1 0 27 1 0 25 chain 40613 chr6 170805979 + 30873903 30874751 MER41A 554 + 28 554 34212 285 326 0 94 1 5 142 chain 384017 chr6 170805979 + 30966380 30971424 HERVL-int 5654 + 885 5654 5412 301 4 14 126 12 13 385 0 2 149 0 3 150 319 3 110 0 4 420 0 1 349 0 3 511 8 7 27 0 2 6 3 1 197 9 10 132 4 5 23 15 18 432 18 23 112 6 7 29 0 2 89 0 3 670 0 1 105 0 1 323 chain 29234 chr6 170805979 + 30971424 30971833 MLT2A1 477 + 0 477 42995 146 0 1 21 5 2 9 0 1 24 0 1 54 0 28 97 19 59 34 chain 108726 chr6 170805979 + 31000294 31001611 LTR12C 1709 + 0 1709 17212 188 14 0 72 1 26 364 0 278 184 1 0 5 3 1 106 0 4 168 0 102 211 chain 5871 chr6 170805979 + 31017270 31017334 LTR12C 1709 + 773 837 81596 64 chain 2851 chr6 170805979 + 31017335 31017403 LTR12C 1709 + 837 946 68186 50 0 41 18 chain 23147 chr6 170805979 + 31017403 31017712 LTR12C 1709 + 668 1033 52151 169 1 0 72 3 18 4 0 1 39 0 41 21 chain 143510 chr6 170805979 + 31020539 31022248 LTR12C 1709 + 0 1709 12809 262 0 1 574 1 0 274 1 0 6 5 3 104 0 4 276 1 0 205 chain 23440 chr6 170805979 + 31053266 31053607 THE1A 353 + 0 353 51694 62 37 49 242 chain 5411 chr6 170805979 + 31083039 31083103 U6 107 + 37 101 83655 64 chain 15009 chr6 170805979 + 31097630 31097822 MER50 708 + 497 701 62260 49 0 9 55 2 0 5 0 5 81 chain 4824 chr6 170805979 + 31167129 31167216 MER50B 698 + 483 568 86584 36 0 1 5 11 10 7 2 0 26 chain 131443 chr6 170805979 + 31195280 31196824 LTR12C 1709 + 1 1709 13876 690 0 159 65 0 2 195 1 0 5 7 5 102 0 4 117 0 2 362 chain 47450 chr6 170805979 + 31211160 31211776 LTR43 600 + 0 600 30488 294 16 0 306 chain 6749 chr6 170805979 + 31214205 31214288 L1MC 810 + 638 721 78478 83 chain 42471 chr6 170805979 + 31215106 31215659 MER41A 554 + 0 554 33080 42 0 15 7 16 1 332 1 0 4 0 1 59 0 1 92 chain 26842 chr6 170805979 + 31216286 31216793 LTR10B1 532 + 0 526 46484 40 2 0 19 16 8 12 3 0 60 11 59 28 43 33 11 31 27 12 1 0 176 1 0 41 chain 24407 chr6 170805979 + 31223243 31223678 MLT2A2 560 + 0 560 50162 178 2 0 15 29 34 75 2 111 45 0 5 9 57 65 23 chain 2828 chr6 170805979 + 31243873 31243910 SVA_F 1814 + 966 1002 43613 35 1 0 1 chain 92861 chr6 170805979 + 31243910 31245322 SVA_F 1814 + 642 1814 19203 4 0 1 13 5 4 72 0 39 13 28 59 9 1 0 30 0 1 13 127 0 47 0 15 221 198 0 631 chain 2550 chr6 170805979 + 31244017 31244045 SVA_F 1814 + 868 896 35770 28 chain 11565 chr6 170805979 + 31244098 31244225 SVA_F 1814 + 949 1091 35770 2 0 15 125 chain 9646 chr6 170805979 + 31244493 31244688 SVA_F 1814 + 943 1181 46184 4 0 15 76 0 1 4 18 46 87 1 0 5 chain 3162 chr6 170805979 + 31253430 31253468 MER21-int 1364 + 940 978 98268 38 chain 52766 chr6 170805979 + 31279425 31280128 L1PA8A 6298 + 5574 6290 28652 238 2 14 124 0 1 24 1 2 205 3 1 8 3 4 4 1 0 46 3 4 41 chain 2948 chr6 170805979 + 31282732 31282800 L1PREC2 3366 + 1229 1299 100385 18 1 2 18 15 16 16 chain 8802 chr6 170805979 + 31326325 31326451 L1PA13 3608 + 3328 3448 72988 7 1 0 56 1 0 5 2 0 45 2 0 7 chain 79104 chr6 170805979 + 31342654 31343557 L1PA5 6144 + 5237 6142 21839 716 0 2 187 chain 61261 chr6 170805979 + 31360457 31361268 L1PA8A 6298 + 5455 6289 26047 34 10 12 10 0 1 34 1 18 16 1 0 476 1 4 185 3 4 40 chain 4786 chr6 170805979 + 31373163 31373267 L1MB5 1630 + 1275 1383 86766 15 19 20 41 6 9 23 chain 25647 chr6 170805979 + 31426917 31427258 MLT2A1 477 + 0 342 48250 4 1 0 28 1 0 110 0 1 24 6 10 27 2 0 138 chain 452429 chr6 170805979 + 31429885 31435550 HERVL-int 5654 + 0 5654 4321 203 0 4 23 0 3 13 5 3 5 0 3 154 2 0 238 1 0 425 0 1 354 0 1 426 0 1 71 19 20 169 67 7 143 0 3 176 3 0 417 0 1 328 0 1 565 0 12 181 0 4 82 0 4 230 5 6 30 0 2 115 1 2 136 0 3 191 0 6 463 6 5 146 2 1 53 0 1 76 1 6 49 4 5 87 chain 32746 chr6 170805979 + 31435550 31436004 MLT2A1 477 + 0 477 39719 142 0 1 26 1 5 30 2 0 194 20 40 39 chain 18107 chr6 170805979 + 31467715 31468050 THE1B 368 + 9 368 58561 35 1 16 114 74 79 53 0 3 46 2 3 10 chain 25700 chr6 170805979 + 31494550 31494850 AluSp 311 + 1 304 48174 140 0 3 160 chain 25044 chr6 170805979 + 31510093 31510475 LTR3A 482 + 27 420 49204 125 14 19 108 7 8 20 5 6 67 5 7 16 0 2 15 chain 18408 chr6 170805979 + 31522128 31522487 L1MA8 2339 + 1847 2188 58232 85 5 1 25 4 5 46 1 0 36 1 6 18 70 50 38 2 3 28 chain 11268 chr6 170805979 + 31771336 31771479 LTR7B 505 + 0 164 68136 108 0 10 21 0 11 14 chain 3085 chr6 170805979 + 31852674 31852709 LTR12C 1709 + 683 718 98923 35 chain 9226 chr6 170805979 + 31893673 31893901 L1MB3 1562 + 1260 1465 72070 17 0 2 72 1 0 16 86 64 7 2 0 27 chain 3468 chr6 170805979 + 31894973 31895013 MER44B 551 + 384 424 95471 40 chain 5414 chr6 170805979 + 31914232 31914310 MLT2C2 476 + 182 263 83638 28 3 6 47 chain 5497 chr6 170805979 + 32207267 32207331 L1MA3 4352 + 2970 3034 83247 64 chain 46463 chr6 170805979 + 32265263 32265774 L1PA4 6152 + 4485 5015 30859 315 0 19 196 chain 280200 chr6 170805979 + 32270922 32275182 L1PB1 5432 + 1743 5427 7416 679 0 4 73 0 1 8 0 5 64 0 5 248 0 4 8 3 0 157 9 1 7 5 0 187 0 2 232 1 6 51 0 1 6 0 1 121 0 1 4 2 1 86 1 0 17 26 8 699 0 1 46 27 32 115 3 0 158 564 16 287 20 21 9 3 0 23 1 0 9 1 0 9 9 5 7 2 0 9 0 3 40 2 1 16 1 0 42 0 8 9 14 1 30 2 0 5 1 0 14 2 0 24 1 0 21 4 3 10 1 0 14 1 0 5 1 0 4 chain 23597 chr6 170805979 + 32276988 32277363 MSTA 426 + 0 426 51440 104 26 54 78 32 29 33 0 26 102 chain 4377 chr6 170805979 + 32277363 32277412 MSTA-int 1630 + 0 49 89021 49 chain 392942 chr6 170805979 + 32279543 32284808 L1PA8 5853 + 50 5853 5273 15 8 6 11 1 0 13 52 13 60 0 3 134 0 4 153 0 1 166 307 0 25 8 5 20 0 1 337 1 0 128 0 1 871 2 1 62 0 1 160 0 863 105 8 6 518 0 3 300 0 1 20 0 2 23 0 6 282 1 0 317 9 17 85 3 0 99 2 1 95 0 1 108 0 1 397 0 10 59 3 2 46 2 0 54 1 0 5 5 6 6 1 0 9 9 8 44 2 1 19 4 3 90 chain 45832 chr6 170805979 + 32304987 32305582 PABL_A 660 + 0 620 31141 96 0 15 13 0 2 14 0 1 78 1 0 60 3 0 14 2 13 314 chain 27079 chr6 170805979 + 32308332 32308616 AluYa5 310 + 16 300 46154 284 chain 33180 chr6 170805979 + 32331443 32331894 LTR46 455 + 0 455 39380 30 9 10 147 1 5 116 1 0 96 1 0 14 0 1 36 chain 5223 chr6 170805979 + 32352887 32352951 U6 107 + 11 75 84579 64 chain 11565 chr6 170805979 + 32362344 32362529 MSTC 436 + 248 423 67635 63 23 19 37 6 0 56 chain 75610 chr6 170805979 + 32374312 32375287 HUERS-P2-int 2744 + 1558 2512 22688 358 4 5 340 20 0 107 1 2 4 1 0 66 1 0 48 5 4 20 chain 37703 chr6 170805979 + 32410470 32410868 L1HS 6032 + 5633 6031 36273 398 chain 27991 chr6 170805979 + 32434119 32434507 L1PA8 5853 + 5451 5853 44883 113 1 0 44 6 4 49 0 20 6 3 1 22 0 1 22 11 10 17 1 0 93 chain 45399 chr6 170805979 + 32452432 32453021 THE1B-int 1605 + 13 630 31367 255 0 2 160 1 26 104 5 6 64 chain 20393 chr6 170805979 + 32454294 32454612 THE1B 368 + 0 328 55895 107 2 3 59 2 1 22 41 51 85 chain 32395 chr6 170805979 + 32457530 32458126 L1PA15 4387 + 3749 4326 40041 64 52 42 36 3 1 40 1 0 107 0 1 60 6 11 14 6 5 55 1 0 21 4 0 9 1 0 41 34 31 27 3 1 11 chain 42952 chr6 170805979 + 32493528 32494103 LTR12 884 + 0 621 32804 65 0 40 129 19 23 79 1 2 38 2 0 86 3 5 22 0 1 131 chain 30242 chr6 170805979 + 32500586 32500998 LTR12_ 688 + 0 673 41812 78 1 42 18 24 8 219 0 236 72 chain 221583 chr6 170805979 + 32507703 32510280 L1PA6 6164 + 3578 6162 8990 1119 0 2 704 12 17 742 chain 47413 chr6 170805979 + 32512829 32513385 LTR14 556 + 0 556 30502 556 chain 124973 chr6 170805979 + 32531546 32532999 SVA_B 1603 + 0 1599 14709 24 1 25 693 1 0 82 0 124 225 0 1 299 1 2 5 1 0 110 2 0 9 chain 57897 chr6 170805979 + 32539139 32539853 LTR12 884 + 0 869 26999 82 0 66 116 0 91 23 3 1 490 chain 54730 chr6 170805979 + 32616429 32617136 LTR30 714 + 0 704 27962 12 0 1 201 2 1 28 1 2 9 1 0 94 1 0 183 16 15 146 1 0 12 chain 213409 chr6 170805979 + 32648273 32650844 L1PA6 6164 + 3645 6149 9220 58 1 0 997 55 1 613 0 1 5 10 0 5 1 0 72 0 1 212 10 7 532 chain 16874 chr6 170805979 + 32653664 32653938 L1MA7 2200 + 1672 1949 59938 47 1 0 65 1 3 43 1 0 6 32 35 78 chain 28336 chr6 170805979 + 32671736 32672079 THE1A 353 + 0 342 44362 110 1 0 232 chain 128946 chr6 170805979 + 32672090 32674001 THE1A-int 1579 + 0 1574 14155 15 0 2 49 0 1 435 0 1 73 0 1 691 341 0 301 1 0 5 chain 29354 chr6 170805979 + 32674009 32674360 THE1A 353 + 3 353 42803 107 1 0 243 chain 165475 chr6 170805979 + 32692352 32694985 L1MA1 4479 + 1697 4190 11381 255 1 0 5 11 14 22 0 1 26 1 2 5 1 0 54 0 6 75 4 0 118 1 2 102 2 6 34 9 10 93 27 0 75 5 8 48 11 10 79 11 15 9 3 1 14 0 1 8 10 9 21 1 0 133 1 0 27 2 0 9 0 1 165 2 0 46 6 7 38 1 0 12 5 0 53 5 0 26 0 20 11 121 14 6 7 0 135 0 1 16 0 2 59 0 1 108 0 1 4 2 0 19 2 0 16 1 0 74 1 0 17 2 0 13 1 0 88 9 5 89 0 1 36 1 0 29 2 0 44 1 0 11 23 15 13 chain 30887 chr6 170805979 + 32698258 32698730 MLT2A2 560 + 1 560 41230 5 1 0 118 1 0 45 12 11 12 50 129 81 0 11 147 chain 29852 chr6 170805979 + 32705265 32705732 L1PA8 5853 + 5422 5853 42184 142 1 0 44 2 0 37 38 8 29 27 25 12 0 1 20 2 1 22 1 0 90 chain 44099 chr6 170805979 + 32733822 32734354 L1PA7 6471 + 5759 6292 32084 83 5 6 444 chain 15150 chr6 170805979 + 32734356 32734559 L1M1 2793 + 1889 2099 62095 121 0 4 57 4 7 21 chain 40692 chr6 170805979 + 32775584 32776099 MER9a1 513 + 0 513 34152 46 25 0 198 1 23 30 0 1 215 chain 57478 chr6 170805979 + 32782378 32783217 L1PA13 3608 + 218 1029 27111 73 2 0 115 34 32 7 2 0 14 27 9 12 2 1 19 3 1 15 2 0 11 6 5 8 0 1 88 2 1 365 0 2 32 chain 85984 chr6 170805979 + 32787534 32788701 L1PA11 4918 + 3401 4578 20444 257 3 2 36 1 0 563 0 1 50 0 4 18 0 4 59 6 5 7 2 0 68 2 0 12 5 4 17 4 0 11 6 22 13 1 0 13 2 0 11 chain 5358 chr6 170805979 + 32964389 32964517 MSTD 398 + 0 132 83922 15 53 57 60 chain 43401 chr6 170805979 + 33046741 33047280 THE1B-int 1605 + 0 587 32509 162 0 21 249 0 25 8 0 2 120 chain 256782 chr6 170805979 + 33052029 33056518 HERVK22-int 3844 + 15 3815 8065 23 3 0 194 0 1 289 0 1 45 1 4 107 4 5 16 2 0 372 4 1 113 9 1 341 0 1 30 0 4 9 26 22 369 0 4 82 1 0 330 9 7 276 0 1 334 1 2 49 1 0 66 5 4 6 1 0 16 6 5 33 1 0 20 2 0 39 26 21 34 159 119 19 10 7 7 0 1 20 826 198 86 18 17 49 chain 14110 chr6 170805979 + 33103283 33103632 L1PB1 5432 + 5109 5426 63437 6 3 0 21 1 0 10 36 32 41 1 0 17 1 0 39 6 5 16 25 13 17 25 20 24 1 0 23 1 0 11 1 0 18 1 0 4 chain 7851 chr6 170805979 + 33199600 33199690 HY4 93 + 0 90 75249 90 chain 5586 chr6 170805979 + 33214781 33214842 MER5A 189 + 30 91 82869 61 chain 136953 chr6 170805979 + 33345909 33347689 HERVH-int 3825 + 1637 3825 13342 49 3 30 65 20 5 304 1 6 32 1 4 360 30 31 296 0 367 57 11 22 132 0 1 115 0 8 304 chain 28413 chr6 170805979 + 33351416 33351803 LTR7B 505 + 0 505 44246 105 0 10 56 12 81 37 2 1 21 1 42 88 2 1 63 chain 23372 chr6 170805979 + 33355250 33355586 LTR14B 630 + 228 628 51818 46 7 53 17 7 18 85 0 4 89 0 3 85 chain 22886 chr6 170805979 + 33369428 33369698 AluSc 308 + 9 284 52531 31 0 5 239 chain 3763 chr6 170805979 + 33394073 33394119 MER20 218 + 87 132 93119 4 1 0 41 chain 5252 chr6 170805979 + 33402373 33402436 MER2 342 + 152 215 84433 63 chain 76869 chr6 170805979 + 33460255 33461099 L1PA3long 6157 + 5314 6157 22356 355 1 0 488 chain 4120 chr6 170805979 + 33462717 33462760 MER66D 528 + 360 403 90652 43 chain 28370 chr6 170805979 + 33465262 33465614 THE1A 353 + 2 353 44314 108 1 0 243 chain 127310 chr6 170805979 + 33465614 33467174 THE1A-int 1579 + 0 1566 14387 567 0 1 94 2 3 380 4 5 92 0 1 362 0 2 59 chain 3787 chr6 170805979 + 33471433 33471489 L1PB1 5432 + 5375 5427 92942 16 1 0 13 1 0 18 2 0 5 chain 2356 chr6 170805979 + 33503127 33503173 LTR12C 1709 + 776 822 79993 46 chain 23403 chr6 170805979 + 33503214 33503509 LTR12C 1709 + 703 997 51753 134 1 0 160 chain 3495 chr6 170805979 + 33508111 33508158 MER112 246 + 195 241 95284 31 1 0 15 chain 73938 chr6 170805979 + 33525378 33526168 SVA_F 1814 + 1027 1814 23108 150 2 0 4 1 0 633 chain 121474 chr6 170805979 + 33532208 33533731 LTR12C 1709 + 0 1709 15266 753 0 2 14 1 0 43 0 200 98 2 1 6 2 0 107 0 4 101 4 0 78 34 21 43 1 2 236 chain 2911 chr6 170805979 + 33609425 33609456 L1MC2 1988 + 1948 1979 100747 31 chain 50362 chr6 170805979 + 33873371 33874007 PABL_A 660 + 0 649 29429 65 1 6 57 1 0 49 2 10 393 0 1 68 chain 37204 chr6 170805979 + 33879735 33880205 LTR7B 505 + 0 490 36611 32 3 0 195 2 0 5 2 0 5 13 38 133 0 2 80 chain 46814 chr6 170805979 + 33880547 33881125 LTR10C 591 + 0 591 30722 14 0 5 8 1 0 439 1 3 28 11 13 16 0 5 60 chain 57923 chr6 170805979 + 33890327 33891088 MER4E 760 + 0 760 26990 17 0 1 133 22 25 77 9 7 101 4 0 214 0 1 5 1 0 13 0 1 165 chain 15223 chr6 170805979 + 33953176 33953394 L1MA6 2487 + 1966 2180 62011 32 9 8 63 3 0 111 chain 21579 chr6 170805979 + 33966892 33967245 MSTA 426 + 9 405 54389 99 16 40 54 40 38 53 4 24 60 0 1 27 chain 3935 chr6 170805979 + 33999746 33999789 LTR37A 408 + 273 316 91869 43 chain 9231 chr6 170805979 + 34168072 34168186 MSTA 426 + 284 399 72051 73 0 1 41 chain 36231 chr6 170805979 + 34173897 34174336 MER75 514 + 62 498 37252 294 3 0 142 chain 20673 chr6 170805979 + 34222583 34222835 AluSp 311 + 54 302 55533 71 1 0 172 3 0 5 chain 79840 chr6 170805979 + 34252496 34254551 L1PB1 5432 + 3481 5422 21653 62 0 635 292 0 1 37 8 13 105 3 0 30 0 1 19 1 0 29 0 2 79 0 1 10 3 2 14 318 0 189 2 0 10 514 102 24 1 0 8 1 0 4 13 9 9 3 1 50 3 2 12 8 7 41 1 0 7 32 20 18 4 2 4 1 0 10 9 7 21 1 0 21 0 8 5 1 0 18 chain 105488 chr6 170805979 + 34268842 34270135 LTR12C 1709 + 0 1709 17620 103 7 5 201 0 1 4 1 0 478 1 319 6 2 0 107 0 4 168 0 102 96 4 0 115 chain 20686 chr6 170805979 + 34274505 34274781 AluSc 308 + 27 298 55514 63 2 1 174 12 8 25 chain 3758 chr6 170805979 + 34366796 34366843 L1MB3 1562 + 1494 1540 93141 30 1 0 16 chain 25628 chr6 170805979 + 34389097 34389482 THE1D 372 + 0 372 48273 72 1 0 4 22 0 24 1 3 33 0 4 46 5 8 118 0 1 59 chain 136207 chr6 170805979 + 34397023 34399146 SVA_F 1814 + 335 1814 13419 613 126 14 218 532 0 634 chain 6284 chr6 170805979 + 34397651 34397761 SVA_F 1814 + 978 1088 55305 110 chain 24186 chr6 170805979 + 34397980 34398250 SVA_F 1814 + 1004 1274 45464 178 5 5 87 chain 7380 chr6 170805979 + 34398250 34398329 SVA_F 1814 + 1098 1177 61639 79 chain 2309 chr6 170805979 + 34398341 34398512 SVA_F 1814 + 849 940 64130 6 1 0 43 79 0 42 chain 6898 chr6 170805979 + 34398392 34398470 SVA_F 1814 + 1011 1089 67899 78 chain 12188 chr6 170805979 + 34439542 34439760 LTR12 884 + 164 374 66489 32 1 26 114 51 18 20 chain 3541 chr6 170805979 + 34500255 34500297 MER57B1 401 + 294 336 94935 42 chain 26002 chr6 170805979 + 34643350 34643694 HSMAR2 1300 + 879 1246 47715 22 6 30 138 0 1 51 2 0 125 chain 20144 chr6 170805979 + 34686686 34686898 AluYd8 298 + 0 212 56197 212 chain 4988 chr6 170805979 + 34687248 34687311 L1MB5 1630 + 810 873 85710 63 chain 22475 chr6 170805979 + 34758780 34759049 AluYc 301 + 36 301 53154 84 0 2 23 10 4 152 chain 24985 chr6 170805979 + 34764197 34764505 AluSp 311 + 0 302 49309 91 0 3 193 5 0 9 4 0 6 chain 155848 chr6 170805979 + 34785779 34787534 SVA_D 2077 + 0 2077 12016 13 12 0 15 1 0 156 0 2 731 0 137 38 0 1 137 0 176 39 1 0 478 0 20 134 chain 7057 chr6 170805979 + 34821444 34821540 HY3 101 + 0 100 77413 16 0 3 26 2 0 23 0 3 29 chain 22663 chr6 170805979 + 34840279 34840572 AluSq10 312 + 10 289 52880 34 6 5 71 13 0 169 chain 6846 chr6 170805979 + 34873842 34873926 HY3 101 + 12 96 78153 84 chain 26173 chr6 170805979 + 34978528 34978825 AluSp 311 + 5 302 47469 297 chain 25230 chr6 170805979 + 34998367 34998835 LTR2B 499 + 9 499 48897 5 1 0 10 0 10 20 0 8 7 40 44 12 8 0 90 6 2 10 0 15 66 0 1 24 16 14 97 17 16 39 chain 108727 chr6 170805979 + 35000467 35001830 Harlequin-int 5206 + 125 2258 17211 8 16 0 10 4 0 145 0 1 17 0 2 48 12 17 110 4 0 43 4 1 359 0 778 203 5 16 375 chain 11721 chr6 170805979 + 35104703 35104890 L1MDa 1598 + 1279 1468 67362 40 17 19 35 2 3 66 1 0 26 chain 24218 chr6 170805979 + 35134869 35135166 AluSp 311 + 0 301 50466 46 4 8 247 chain 47707 chr6 170805979 + 35138040 35138888 L1MA3 4352 + 3532 4352 30396 296 0 2 15 4 19 34 0 1 4 29 21 138 9 8 22 99 72 16 1 0 74 7 5 23 1 0 6 1 0 21 26 21 22 chain 4704 chr6 170805979 + 35174394 35174665 L1MB7 1623 + 1389 1598 87238 33 1 0 7 121 84 9 7 0 10 45 28 38 chain 3606 chr6 170805979 + 35224972 35225074 MER3 215 - 14 149 94371 29 49 82 24 chain 4478 chr6 170805979 + 35282380 35282434 MER53 195 + 136 190 88450 54 chain 382303 chr6 170805979 + 35331970 35336436 L1P2 5180 + 13 4481 5441 132 7 6 42 2 1 53 1 0 160 7 0 4 4 0 50 1 0 54 1 0 88 0 2 96 0 1 85 1 0 6 1 0 349 0 4 800 0 2 224 0 1 40 0 1 176 0 4 377 1 8 911 2 0 791 chain 100509 chr6 170805979 + 35339738 35340993 SVA_C 1631 + 20 1292 18234 21 0 6 157 0 11 325 40 0 310 19 20 8 0 1 31 1 0 3 1 0 37 2 0 14 2 1 8 0 45 233 3 1 40 chain 66165 chr6 170805979 + 35383322 35384138 SVA_D 2077 + 327 1138 20277 298 0 1 177 40 0 105 3 0 11 0 35 80 2 4 100 chain 86780 chr6 170805979 + 35384138 35385654 SVA_F 1814 + 646 1812 20262 14 0 3 5 6 83 16 144 0 8 1 0 15 38 1 13 159 23 28 1 0 32 0 1 4 1 2 48 127 0 4 0 16 211 1 0 282 0 3 339 3 0 5 1 0 10 chain 11676 chr6 170805979 + 35384179 35384323 SVA_D 2077 + 1179 1453 20277 78 0 1 4 5 85 14 0 49 43 chain 3081 chr6 170805979 + 35384347 35384385 SVA_D 2077 + 1477 1515 20277 38 chain 6886 chr6 170805979 + 35384407 35384557 SVA_F 1814 + 902 1067 36968 45 0 15 105 chain 7341 chr6 170805979 + 35384680 35384797 SVA_F 1814 + 1015 1132 55327 117 chain 4534 chr6 170805979 + 35472562 35472662 MER53 195 + 1 169 88143 36 34 102 30 chain 8063 chr6 170805979 + 35605706 35605880 L1PA17 2846 + 1253 1405 74715 46 10 11 10 5 4 11 34 12 58 chain 78245 chr6 170805979 + 35651939 35652986 MER11C 1089 + 0 1063 22039 247 7 16 50 0 4 69 1 0 177 16 15 106 7 11 4 1 0 38 0 1 125 1 2 55 1 0 117 0 1 25 chain 5498 chr6 170805979 + 35654281 35654367 Tigger4a 237 + 153 237 83241 25 1 2 50 3 0 7 chain 3735 chr6 170805979 + 35700103 35700147 MLT1H-int 1039 + 887 931 93363 44 chain 11133 chr6 170805979 + 35844972 35845181 L1MC1 2226 + 1888 2099 68355 28 0 1 63 3 0 15 2 0 5 0 17 30 22 16 20 5 0 16 chain 9737 chr6 170805979 + 35849845 35850037 L1MA7 2200 + 1794 1977 70964 10 5 0 23 2 0 3 1 0 36 13 15 35 7 6 27 2 0 28 chain 65627 chr6 170805979 + 35863948 35864899 L1MA2 4263 + 3165 4114 25048 8 0 6 181 1 0 207 6 0 17 6 2 76 1 0 43 3 8 83 30 26 42 0 6 88 1 0 8 1 0 61 0 3 4 0 1 23 7 0 42 2 4 10 chain 3020 chr6 170805979 + 35901497 35901535 MLT1B 390 + 311 350 99649 28 0 1 10 chain 116276 chr6 170805979 + 35931085 35932478 LTR12C 1709 + 0 1668 16172 303 8 5 342 0 278 184 1 0 5 3 1 20 2 1 85 0 4 440 chain 21001 chr6 170805979 + 35939275 35939578 THE1D 372 + 0 308 55120 53 18 11 71 0 4 37 11 19 113 chain 129603 chr6 170805979 + 35939932 35941493 THE1A-int 1579 + 0 1579 14082 520 9 19 139 0 1 532 5 11 347 0 1 9 chain 26928 chr6 170805979 + 35941499 35941915 THE1A 353 + 7 353 46365 5 3 0 12 0 1 59 0 1 26 1 0 32 0 1 191 69 0 18 chain 13179 chr6 170805979 + 35973439 35973666 MER30 238 + 0 238 64812 15 11 10 71 15 29 74 11 9 30 chain 8343 chr6 170805979 + 36037041 36037168 Tigger1 2417 + 2217 2338 74045 28 12 6 87 chain 279564 chr6 170805979 + 36083815 36087864 L1PA10 4194 + 116 4161 7433 8 2 0 13 4 0 7 39 31 13 3 0 12 3 0 7 23 17 8 2 0 9 1 0 9 1 0 21 2 0 15 52 27 22 2 0 18 1 0 10 1 0 7 1 0 8 3 2 14 4 0 9 1 0 15 0 1 69 3 1 248 0 5 112 11 30 179 0 1 11 2 0 147 8 10 61 0 5 157 42 45 79 2 1 84 10 7 159 0 4 189 4 5 44 0 9 183 0 1 99 0 1 33 3 5 226 1 0 4 14 13 16 5 3 9 2 1 22 1 9 32 0 1 159 1 9 69 13 14 59 3 4 163 4 5 13 10 6 203 9 14 66 0 5 115 0 4 195 0 1 17 18 12 210 0 2 31 4 1 35 1 0 10 chain 106229 chr6 170805979 + 36165774 36167263 L1PB1 5432 + 3965 5424 17540 238 0 7 275 6 7 122 10 7 194 3 0 288 1 2 9 1 0 24 1 0 9 16 11 11 3 1 50 19 17 44 1 0 15 3 0 16 9 0 15 24 19 24 2 1 20 1 0 13 1 0 16 1 0 4 chain 25404 chr6 170805979 + 36186298 36186669 THE1C 375 + 0 375 48618 37 1 6 64 0 1 63 39 37 167 chain 22125 chr6 170805979 + 36199097 36199416 MER1B 344 + 0 344 53663 24 6 17 175 4 0 30 1 0 4 16 35 59 chain 4160 chr6 170805979 + 36207961 36208158 MIR 256 + 32 230 90388 30 130 131 37 chain 11799 chr6 170805979 + 36305150 36305302 MER30 238 + 68 238 67210 40 3 21 109 chain 17678 chr6 170805979 + 36344457 36344674 MLT2A1 477 + 221 477 59034 163 4 0 15 0 43 35 chain 21968 chr6 170805979 + 36353631 36354005 THE1B 368 + 5 368 53879 14 10 0 5 0 1 65 14 0 12 0 9 45 10 8 5 1 0 30 12 17 90 1 0 4 8 10 48 chain 2739 chr6 170805979 + 36397248 36397295 L1MB7 1623 + 611 659 102048 11 4 5 32 chain 25807 chr6 170805979 + 36404972 36405374 Tigger3b 1229 + 338 767 48004 8 0 1 79 1 2 123 1 3 4 1 0 9 6 0 6 2 13 37 0 4 35 0 1 6 0 2 17 1 0 8 0 11 8 6 8 44 chain 9943 chr6 170805979 + 36463514 36463848 MLT1A1 405 + 0 405 70547 17 6 7 12 34 32 33 0 36 13 20 36 9 6 0 11 26 58 14 39 35 22 2 1 42 1 0 27 chain 12244 chr6 170805979 + 36525047 36525240 L1PA8 5853 + 5664 5853 66387 15 1 0 13 2 1 10 0 1 39 1 0 17 2 1 68 4 0 12 0 3 9 chain 3636 chr6 170805979 + 36665399 36665448 MLT2B2 565 + 519 565 94130 8 3 0 38 chain 4273 chr6 170805979 + 36672893 36672942 HY3 101 + 51 100 89670 49 chain 13681 chr6 170805979 + 36689040 36689199 L1PA6 6164 + 6005 6162 64037 149 2 0 8 chain 10470 chr6 170805979 + 36790379 36790549 Charlie1b 519 + 66 278 69468 33 2 43 14 16 17 105 chain 5947 chr6 170805979 + 36870486 36870575 MER2 342 + 84 172 81290 20 8 7 61 chain 145970 chr6 170805979 + 36882290 36885059 MER57-int 2662 + 526 2659 12618 241 0 19 84 0 8 85 340 0 81 0 8 51 0 4 46 6 0 156 0 3 54 0 2 36 1 0 197 0 16 64 7 6 222 3 0 6 318 6 337 0 1 68 11 6 91 18 12 27 5 6 16 0 4 15 124 100 21 3 0 30 1 0 4 chain 134228 chr6 170805979 + 36941009 36942489 SVA_C 1631 + 22 1631 13625 692 0 37 78 0 87 75 0 4 8 0 1 627 chain 12186 chr6 170805979 + 37035876 37036042 L1PA8 5853 + 5688 5853 66495 11 1 2 38 3 2 19 1 0 93 chain 22459 chr6 170805979 + 37065980 37066744 HSMAR2 1300 + 321 744 53183 17 45 48 12 0 4 130 26 21 69 324 0 18 17 11 20 1 0 60 12 0 13 chain 3246 chr6 170805979 + 37121444 37121507 MER5A1 166 + 72 137 97522 13 13 14 16 0 1 21 chain 4644 chr6 170805979 + 37181278 37181333 MER58B 340 + 207 262 87564 55 chain 62206 chr6 170805979 + 37195185 37195881 L1PA5 6144 + 5443 6138 25815 387 1 0 308 chain 19673 chr6 170805979 + 37233821 37234101 MER47A 366 + 19 290 56820 15 0 1 7 2 1 94 1 0 49 9 1 103 chain 10329 chr6 170805979 + 37294961 37295091 Tigger1 2417 + 1831 1963 69741 45 0 2 85 chain 41147 chr6 170805979 + 37297718 37298207 L1PA7 6471 + 5983 6469 33881 339 2 1 136 2 0 10 chain 41972 chr6 170805979 + 37347698 37348276 LTR43 600 + 1 600 33371 252 15 17 89 1 0 3 1 0 46 15 34 84 1 3 71 chain 25394 chr6 170805979 + 37573983 37574283 AluSp 311 + 10 306 48632 49 4 0 247 chain 10968 chr6 170805979 + 37750255 37750729 L1PA8 5853 + 5701 5847 68597 39 2 1 20 327 0 86 chain 3771 chr6 170805979 + 37802579 37802658 MADE1 96 - 0 96 93057 38 11 28 30 chain 24732 chr6 170805979 + 37809720 37809997 L1PA4 6152 + 5858 6136 49677 180 0 1 97 chain 2929 chr6 170805979 + 37863399 37863430 MADE1 96 - 64 95 100595 31 chain 19866 chr6 170805979 + 37880807 37881023 L1HS 6032 + 5815 6031 56588 216 chain 3380 chr6 170805979 + 37912570 37912607 HY5 76 + 0 37 96288 37 chain 7330 chr6 170805979 + 37929070 37929185 MER85 139 + 11 139 76567 47 0 3 14 9 20 4 1 0 40 chain 54146 chr6 170805979 + 37962486 37963192 LTR12_ 688 + 0 688 28173 58 0 4 60 1 26 18 42 0 304 4 0 43 1 0 175 chain 4436 chr6 170805979 + 37963203 37963273 L1M1 2793 + 1451 1522 88695 52 6 7 12 chain 13201 chr6 170805979 + 37983662 37983886 Tigger3b 1229 + 938 1165 64778 43 10 0 10 21 35 33 2 1 105 chain 5957 chr6 170805979 + 38007996 38008065 MER5A1 166 + 75 144 81249 69 chain 27353 chr6 170805979 + 38050380 38050741 THE1C 375 + 0 374 45759 64 6 16 104 2 3 17 0 2 168 chain 21356 chr6 170805979 + 38080065 38080306 L1PA7 6471 + 6219 6460 54695 241 chain 12259 chr6 170805979 + 38111236 38111427 MER2 342 + 14 213 66351 62 14 14 14 1 8 94 0 1 6 chain 17165 chr6 170805979 + 38255834 38256061 L1PA6 6164 + 5923 6147 59611 69 3 1 23 7 6 125 chain 4117 chr6 170805979 + 38271536 38271581 MER58A 224 + 43 88 90669 45 chain 117690 chr6 170805979 + 38274377 38276508 L1PA4 6152 + 3886 6151 15940 550 0 133 808 0 1 281 1 0 283 0 1 208 chain 28856 chr6 170805979 + 38287150 38287677 Tigger3c 601 + 161 540 43546 21 0 1 10 0 5 111 152 0 182 2 0 49 chain 140523 chr6 170805979 + 38293141 38294808 L1PA7 6471 + 4786 6466 13055 52 7 2 83 0 1 181 1 2 265 2 0 249 2 0 66 0 3 103 0 1 221 0 15 101 0 1 334 chain 24370 chr6 170805979 + 38401073 38401443 THE1D 372 + 0 372 50211 107 0 1 52 0 3 6 24 24 13 17 18 76 2 0 40 1 0 32 chain 62085 chr6 170805979 + 38426150 38426880 LTR17 781 + 0 732 25847 63 0 3 53 0 9 170 10 0 29 0 1 64 1 0 340 chain 27499 chr6 170805979 + 38433309 38433723 LTR7Y 441 + 0 431 45582 160 68 84 166 0 1 20 chain 58739 chr6 170805979 + 38433928 38434678 MER4E1 777 + 0 769 26753 191 0 5 34 4 7 91 0 2 164 0 11 135 2 0 129 chain 6552 chr6 170805979 + 38529443 38529581 L1M1 2793 + 805 939 79150 26 11 8 35 28 27 38 chain 76481 chr6 170805979 + 38529582 38530618 MER11A 1151 + 0 1151 22444 55 0 99 50 1 0 26 1 0 64 4 0 32 0 2 115 0 1 94 0 1 66 1 0 52 4 5 13 4 5 140 9 42 22 18 0 36 0 1 60 6 7 163 chain 3390 chr6 170805979 + 38546613 38546651 Tigger1 2417 + 168 206 96185 38 chain 7067 chr6 170805979 + 38565961 38566050 HY1 111 + 13 106 77374 15 0 4 74 chain 3745 chr6 170805979 + 38591619 38591681 MIR 256 + 74 137 93289 36 1 3 13 2 1 10 chain 40398 chr6 170805979 + 38605813 38606342 MLT2A2 560 + 0 560 34386 169 24 40 184 0 6 6 3 8 137 0 4 6 chain 32542 chr6 170805979 + 38616528 38616951 LTR12F 595 + 0 595 39918 79 0 167 120 0 1 150 4 8 70 chain 451573 chr6 170805979 + 38616971 38622531 HERV9-int 5642 + 0 5547 4347 282 0 11 122 4 5 277 21 0 19 6 0 132 4 2 9 4 0 105 7 6 130 2 3 406 0 1 35 7 1 679 1 0 507 0 3 56 1 0 201 9 22 1062 0 4 740 0 1 380 0 1 28 1 0 87 1 0 140 5 3 14 42 40 11 1 0 22 chain 33428 chr6 170805979 + 38624035 38624486 LTR12F 595 + 0 595 39151 80 0 167 33 24 0 86 0 1 228 chain 45010 chr6 170805979 + 38667351 38667864 MER9a1 513 + 0 513 31578 19 2 0 365 1 0 4 0 1 65 0 2 57 chain 77949 chr6 170805979 + 38699151 38700211 MER11A 1151 + 0 1146 22111 108 0 2 33 0 93 56 6 2 32 0 3 59 0 1 48 6 7 94 0 1 296 25 1 26 16 21 37 0 1 60 6 7 44 5 4 34 0 6 59 1 2 9 chain 5395 chr6 170805979 + 38711294 38711356 LTR14A 344 + 282 344 83723 62 chain 31274 chr6 170805979 + 38749108 38749539 L1PA8 5853 + 5430 5853 40916 134 1 0 46 2 0 71 1 0 12 6 3 44 2 1 22 1 0 36 0 1 53 chain 32472 chr6 170805979 + 38796433 38796892 LTR2 463 + 0 463 39967 61 0 3 41 5 6 164 16 16 87 3 4 29 9 8 20 1 0 19 0 1 4 chain 49814 chr6 170805979 + 38808502 38809100 L1PA7 6471 + 5872 6469 29633 583 4 3 11 chain 19386 chr6 170805979 + 38882049 38882390 L1PA15 4387 + 4003 4329 57146 101 1 0 20 8 6 33 1 0 14 9 8 17 4 0 15 1 0 36 20 17 44 3 1 14 chain 3439 chr6 170805979 + 38902904 38902944 Tigger3b 1229 + 42 82 95751 40 chain 13422 chr6 170805979 + 38906861 38907076 Tigger4a 237 + 23 227 64436 10 8 0 62 3 0 27 12 11 63 0 1 30 chain 27685 chr6 170805979 + 38937025 38937365 L1PA7 6471 + 6131 6470 45341 189 5 4 146 chain 29562 chr6 170805979 + 38954422 38954732 AluYg6 310 + 0 310 42536 310 chain 14467 chr6 170805979 + 38962841 38963117 L1PB1 5432 + 5168 5423 62940 52 0 2 15 1 0 43 1 0 21 49 35 10 2 0 24 1 0 21 1 0 13 1 0 10 2 0 9 chain 12390 chr6 170805979 + 39104478 39104648 MER1B 344 + 158 344 66151 84 0 2 9 10 24 67 chain 21530 chr6 170805979 + 39122534 39122861 LTR7B 505 + 0 441 54470 105 0 10 49 25 101 24 19 7 15 0 41 25 1 0 64 chain 6630 chr6 170805979 + 39232913 39232994 MER4D1 891 + 121 202 78872 81 chain 13656 chr6 170805979 + 39248559 39248758 MSTC 436 + 0 225 64073 18 0 4 97 6 19 16 5 13 22 0 1 35 chain 26341 chr6 170805979 + 39264096 39264387 AluY 311 + 6 298 47214 126 0 1 165 chain 554099 chr6 170805979 + 39454557 39460534 L1PA2 6032 + 51 6029 473 2365 0 1 3612 chain 343814 chr6 170805979 + 39501307 39505936 L1PA11 4918 + 8 4578 5998 8 1 0 25 3 1 38 1 0 4 3 1 31 1 0 7 0 1 4 2 0 52 1 0 33 2 0 3 1 0 100 2 0 117 10 11 30 1 0 46 21 19 172 4 6 26 6 1 164 0 1 154 7 0 486 6 7 44 0 4 160 4 3 48 4 1 285 0 17 90 3 0 48 1 0 4 6 9 252 0 4 17 34 0 465 0 8 1037 1 0 276 6 0 65 2 1 13 2 0 65 2 0 16 2 1 19 4 0 9 34 25 12 1 0 12 3 1 11 chain 280198 chr6 170805979 + 39508241 39512099 L1PA6 6164 + 0 6159 7417 450 20 1 58 0 7 53 1 0 218 0 17 97 3 6 299 15 16 620 315 0 211 0 1 271 16 0 319 1 2623 51 5 9 570 2 0 254 1 0 8 chain 2997 chr6 170805979 + 39515953 39515988 Tigger4a 237 - 106 141 99870 35 chain 556698 chr6 170805979 + 39533028 39539227 L1PA3long 6157 + 6 6157 314 577 48 0 2594 1 0 1944 0 1 1035 chain 34159 chr6 170805979 + 39645740 39646124 L1PA5 6144 + 5754 6138 38589 384 chain 25742 chr6 170805979 + 39659473 39659846 THE1C 375 + 0 375 48104 81 1 2 35 0 1 67 0 1 95 7 6 45 16 19 5 3 0 18 chain 5325 chr6 170805979 + 39672069 39672136 MER6A 605 + 412 479 84073 67 chain 26875 chr6 170805979 + 39678029 39678314 L1HS 6032 + 5246 5531 46435 285 chain 21677 chr6 170805979 + 39712694 39712965 L1PA6 6164 + 5896 6162 54260 6 0 1 253 6 0 6 chain 35642 chr6 170805979 + 39723460 39723895 L1PA7 6471 + 6030 6461 37638 72 4 0 359 chain 481438 chr6 170805979 + 39736405 39741931 L1PA4 6152 + 0 5517 3597 824 0 3 168 0 1 1379 0 1 2016 30 4 283 0 11 575 1 3 181 2 1 67 chain 25349 chr6 170805979 + 39751767 39752109 MER57-int 2662 + 2060 2413 48712 116 22 25 12 0 6 88 0 4 21 2 0 81 chain 11660 chr6 170805979 + 39752531 39752673 MER51B 395 + 4 202 67461 85 0 56 57 chain 58971 chr6 170805979 + 39767626 39768298 L1PA5 6144 + 5461 6134 26674 349 1 2 322 chain 16066 chr6 170805979 + 39814042 39814303 MER30 238 + 0 235 60939 105 11 0 8 22 0 13 3 13 60 3 0 36 chain 25751 chr6 170805979 + 39971063 39971405 THE1A 353 + 0 340 48091 15 2 0 32 0 1 42 5 4 246 chain 116780 chr6 170805979 + 39971421 39972984 THE1A-int 1579 + 4 1574 16086 16 6 8 116 0 3 291 8 19 8 9 0 10 21 21 114 36 35 11 0 1 13 21 22 515 1 0 367 chain 63352 chr6 170805979 + 40064648 40065348 L1PA3long 6157 + 4197 4897 25552 700 chain 24659 chr6 170805979 + 40067456 40067771 MSTA-int 1630 + 1312 1629 49786 28 0 2 141 0 1 31 1 0 114 chain 42699 chr6 170805979 + 40099396 40099926 L1PA7 6471 + 5931 6468 32946 251 0 3 35 4 8 240 chain 7781 chr6 170805979 + 40184546 40184665 L1PB1 5432 + 5309 5420 75413 18 2 0 5 1 0 13 2 0 25 1 0 21 1 0 13 1 0 16 chain 4724 chr6 170805979 + 40215461 40215546 L1MA4A 3247 + 3044 3128 87105 50 17 16 18 chain 237505 chr6 170805979 + 40237385 40240697 L1PA14 3548 + 90 3407 8534 58 5 0 69 1 0 17 2 1 33 2 0 23 11 14 365 7 21 115 0 1 169 14 18 45 10 10 341 0 1 91 11 8 21 0 8 362 4 3 87 7 1 4 0 1 232 8 18 221 1 0 87 2 1 152 1 0 218 0 1 13 21 21 12 2 0 30 2 1 16 9 5 102 32 26 4 1 0 84 1 0 58 3 11 42 14 9 38 4 2 12 1 0 5 1 0 9 chain 41208 chr6 170805979 + 40245464 40245917 L1PA2 6032 + 5579 6032 33836 453 chain 3200 chr6 170805979 + 40253210 40253281 MER96B 391 - 43 123 97891 18 1 0 9 20 30 23 chain 4154 chr6 170805979 + 40388273 40388323 MIRb 242 + 62 113 90437 6 0 1 44 chain 24022 chr6 170805979 + 40394650 40395028 THE1B 368 + 0 368 50766 169 1 0 29 41 51 47 1 0 4 0 1 6 19 0 61 chain 6290 chr6 170805979 + 40436299 40436469 MER58A 224 + 45 216 80031 41 0 4 3 4 0 9 67 68 46 chain 156974 chr6 170805979 + 40565162 40566895 L1PA4 6152 + 4417 6152 11940 865 0 1 208 0 1 660 chain 3202 chr6 170805979 + 40797984 40798021 MIR 256 + 79 116 97874 37 chain 36275 chr6 170805979 + 40807450 40807985 MLT2A2 560 + 0 560 37225 28 3 0 17 13 16 30 3 0 78 25 41 157 5 6 29 0 11 147 chain 57743 chr6 170805979 + 40815930 40816573 SVA_B 1603 + 954 1599 27036 51 0 1 160 0 1 432 chain 79749 chr6 170805979 + 40823475 40824408 L1PA6 6164 + 5215 6150 21680 17 0 1 20 0 1 748 13 13 135 chain 42254 chr6 170805979 + 40898799 40899342 MER41A 554 + 0 546 33215 87 5 6 41 0 1 211 1 2 82 0 1 95 1 0 20 chain 160581 chr6 170805979 + 40941020 40943690 L1PB1 5432 + 3145 5430 11714 87 4 5 127 2 3 23 0 1 338 8 10 43 0 1 112 10 6 91 8 7 336 306 0 200 0 2 107 0 1 204 6 7 137 43 12 93 31 16 20 1 0 12 1 0 10 19 13 38 9 8 4 1 0 18 3 0 38 8 5 16 3 0 7 16 7 12 7 5 5 1 0 14 2 0 24 1 0 20 2 1 13 1 0 18 1 0 4 1 0 4 chain 53837 chr6 170805979 + 40948966 40949659 MER4E1 777 + 82 777 28274 217 16 13 4 0 1 62 0 1 156 19 22 219 chain 2690 chr6 170805979 + 40981404 40981453 L1MA4 2864 + 2746 2796 102411 18 8 9 23 chain 61822 chr6 170805979 + 41015715 41016407 L1PA5 6144 + 5447 6143 25909 269 0 2 275 0 2 148 chain 25957 chr6 170805979 + 41123958 41124234 AluYa5 310 + 24 299 47783 99 1 0 176 chain 41257 chr6 170805979 + 41218463 41218951 L1PA7 6471 + 5971 6461 33814 155 3 5 330 chain 306941 chr6 170805979 + 41243578 41247054 L1PA5 6144 + 2650 6129 6679 2615 0 1 41 0 1 66 0 2 614 1 0 139 chain 4016 chr6 170805979 + 41278329 41278377 LTR33A_ 513 + 409 457 91337 48 chain 16127 chr6 170805979 + 41298157 41298369 MSTB 430 + 213 430 60858 89 1 6 122 chain 19993 chr6 170805979 + 41361068 41361405 MSTA 426 + 55 426 56395 99 0 6 44 20 12 10 29 57 17 9 17 109 chain 67674 chr6 170805979 + 41479909 41481576 Tigger1 2417 + 655 1567 24524 100 0 2 41 327 0 164 329 0 141 0 9 22 7 8 324 111 0 101 chain 78169 chr6 170805979 + 41616308 41617197 SVA_D 2077 + 735 2077 22055 51 0 162 50 0 57 192 5 229 253 0 10 338 chain 39108 chr6 170805979 + 41718912 41719447 MER1A 529 + 0 529 35280 82 12 0 10 0 4 347 22 24 62 chain 21320 chr6 170805979 + 41810198 41810493 AluSq10 312 + 0 287 54735 125 0 3 5 22 10 63 1 2 79 chain 15658 chr6 170805979 + 41811345 41811561 MER44A 345 + 114 345 61457 61 0 2 6 1 12 30 0 3 19 1 0 98 chain 23553 chr6 170805979 + 41838764 41839125 L1PBa 3878 + 2210 2583 51498 22 0 1 36 0 1 105 43 53 37 1 0 36 1 2 80 chain 12441 chr6 170805979 + 41841691 41842218 Ricksha_0 1343 + 0 213 66080 32 363 49 132 chain 15782 chr6 170805979 + 41994093 41994337 Tigger3a 397 + 35 337 61309 40 30 89 12 1 0 161 chain 7706 chr6 170805979 + 42085994 42086140 MLT1A0 366 + 156 326 75614 39 37 61 70 chain 24179 chr6 170805979 + 42096916 42097202 AluSg7 307 + 9 296 50523 122 0 1 164 chain 14696 chr6 170805979 + 42137851 42138063 AluSc 308 + 57 285 62683 75 8 9 10 6 22 38 4 3 71 chain 22249 chr6 170805979 + 42147822 42148125 AluSp 311 + 9 308 53476 60 5 0 68 16 16 115 0 1 39 chain 13843 chr6 170805979 + 42203019 42203217 MER30 238 + 18 238 63805 86 9 0 10 4 32 49 1 4 39 chain 4367 chr6 170805979 + 42205591 42205641 MADE1 96 + 45 95 89070 50 chain 144161 chr6 170805979 + 42285741 42287305 L1PA2 6032 + 4466 6032 12760 296 2 4 1266 chain 77369 chr6 170805979 + 42324173 42325252 L1PA17 2846 + 1626 2693 22227 46 0 3 208 2 3 211 0 1 403 4 0 16 6 0 16 1 0 51 10 7 9 1 0 32 9 8 10 6 5 38 chain 9162 chr6 170805979 + 42363705 42363949 MLT1C 463 + 135 448 72204 15 2 0 31 93 161 57 6 9 40 chain 24776 chr6 170805979 + 42462042 42462335 AluY 311 + 5 299 49621 50 0 1 243 chain 97396 chr6 170805979 + 42466048 42467172 SVA_D 2077 + 328 1824 18606 515 40 0 69 0 314 77 0 98 423 chain 34536 chr6 170805979 + 42470536 42470965 MER41-int 2638 + 2206 2636 38334 301 0 2 47 1 0 80 chain 45292 chr6 170805979 + 42515892 42516677 L1PB1 5432 + 4664 5404 31424 133 2 1 212 7 9 79 8 7 9 26 0 24 1 0 4 3 2 12 23 17 36 3 10 12 8 7 42 1 0 20 1 0 4 12 4 18 3 1 5 1 0 14 2 0 24 1 0 23 1 0 11 chain 62559 chr6 170805979 + 42554055 42554955 LTR12D 1347 + 0 1347 25741 209 0 1 4 7 42 40 1 37 38 0 1 63 3 154 105 0 17 127 30 28 31 3 0 7 3 6 59 12 212 34 6 14 118 chain 16411 chr6 170805979 + 42682090 42682364 L1MB3 1562 + 1269 1524 60505 37 7 8 37 1 0 72 27 10 5 2 0 86 chain 3527 chr6 170805979 + 42683873 42683914 Tigger4a 237 + 194 235 95046 41 chain 68923 chr6 170805979 + 42737416 42738293 L1MA3 4352 + 3218 4093 24231 670 4 0 16 6 7 20 0 1 161 chain 22328 chr6 170805979 + 42823965 42824255 AluSc5 308 + 10 305 53368 113 13 18 164 chain 49620 chr6 170805979 + 42954337 42954909 LTR10C 591 + 10 586 29716 285 0 1 38 0 1 175 0 2 74 chain 25495 chr6 170805979 + 43370197 43370576 LTR7B 505 + 0 492 48488 105 0 10 55 21 87 32 2 1 21 0 41 87 16 15 26 2 0 12 chain 41200 chr6 170805979 + 43390786 43391512 LTR71B 605 + 0 605 33842 111 3 4 18 20 37 14 1 0 20 0 12 48 1 0 90 6 0 23 11 12 93 144 0 123 chain 37422 chr6 170805979 + 43393150 43393604 LTR2 463 + 7 463 36463 355 3 4 49 0 1 47 chain 5256 chr6 170805979 + 43393686 43393750 LTR18B 584 + 326 392 84413 10 0 2 54 chain 45815 chr6 170805979 + 43399832 43400430 LTR71B 605 + 0 605 31156 135 5 16 34 9 14 134 0 1 11 12 2 258 chain 32216 chr6 170805979 + 43410965 43411332 L1PA7 6471 + 6097 6464 40170 367 chain 2934 chr6 170805979 + 43411339 43411373 L1MB3 1562 + 572 606 100545 34 chain 1338 chr6 170805979 + 43422601 43422824 Tigger1 2417 + 961 1184 54548 223 chain 118181 chr6 170805979 + 43424626 43425991 SVA_C 1631 + 0 1616 15852 13 8 8 187 1 0 238 0 116 84 0 40 207 1 97 12 4 2 14 1 0 366 0 3 229 chain 924 chr6 170805979 + 43426027 43426181 Tigger1 2417 + 1588 1747 54548 16 7 5 42 14 21 75 chain 22871 chr6 170805979 + 43467330 43467700 THE1B 368 + 0 368 52547 108 26 27 42 34 26 11 0 4 89 6 7 54 chain 4480 chr6 170805979 + 43678329 43678382 MER5B 177 - 124 177 88443 53 chain 28714 chr6 170805979 + 43713187 43713493 AluYb8 318 + 0 307 43768 176 0 1 130 chain 3028 chr6 170805979 + 43796057 43796093 MER53 195 - 127 163 99526 36 chain 54412 chr6 170805979 + 43882955 43883602 L1PA5 6144 + 5498 6143 28079 99 0 1 533 3 0 12 chain 4335 chr6 170805979 + 43965950 43965997 MER63A 208 + 103 150 89270 47 chain 111354 chr6 170805979 + 43997916 43999279 LTR12C 1709 + 0 1707 16897 282 12 11 45 0 43 269 0 278 104 0 20 22 0 2 36 1 0 6 2 0 53 0 2 51 0 4 393 5 4 82 chain 18325 chr6 170805979 + 44017704 44017967 AluSc 308 + 20 257 58325 15 39 13 209 chain 23503 chr6 170805979 + 44131454 44131724 AluSc 308 + 16 286 51586 270 chain 31309 chr6 170805979 + 44185343 44185770 LTR10F 562 + 0 512 40883 105 0 1 47 20 100 13 5 11 198 2 0 37 chain 25279 chr6 170805979 + 44218780 44219073 AluSp 311 + 0 299 48818 77 0 6 216 chain 34479 chr6 170805979 + 44317068 44317453 SVA_A 1864 + 1460 1862 38371 112 0 17 273 chain 10179 chr6 170805979 + 44351196 44351386 MER2 342 + 143 321 70057 69 5 0 40 17 17 19 17 10 23 chain 13670 chr6 170805979 + 44386170 44386395 L1MA3 4352 + 4134 4352 64051 45 1 0 8 0 1 70 2 0 24 8 6 29 1 0 8 7 5 22 chain 11871 chr6 170805979 + 44421697 44421880 MER2 342 + 148 336 67069 126 22 27 35 chain 5108 chr6 170805979 + 44466891 44467008 MER97c 529 + 395 516 85123 42 45 49 30 chain 3129 chr6 170805979 + 44536194 44536227 MER103C 291 + 131 164 98555 33 chain 33476 chr6 170805979 + 44544573 44545035 MER4A1 472 + 0 472 39110 128 33 42 153 0 1 148 chain 6306 chr6 170805979 + 44553654 44553732 MER20 218 + 90 171 79976 69 0 3 9 chain 4182 chr6 170805979 + 44601756 44601805 MADE1 96 + 47 96 90247 49 chain 13885 chr6 170805979 + 44679400 44679552 L1PA5 6144 + 5816 5968 63756 152 chain 22249 chr6 170805979 + 44741477 44741738 AluYk4 311 + 39 295 53478 245 5 0 11 chain 523400 chr6 170805979 + 44747462 44753578 L1PA4 6152 + 11 6152 2121 1183 13 21 1101 0 4 320 0 1 524 0 1 99 0 2 644 2 1 116 0 3 720 0 1 1286 0 1 102 0 5 6 chain 75434 chr6 170805979 + 44753583 44754428 L1PA5 6144 + 5284 6128 22734 714 1 0 130 chain 117547 chr6 170805979 + 44770153 44771538 L1PA7 6471 + 5020 6421 15966 116 7 16 450 0 4 8 0 3 804 chain 26827 chr6 170805979 + 44774244 44774631 THE1D 372 + 0 370 46504 75 19 0 60 6 10 43 0 2 141 7 3 36 chain 557311 chr6 170805979 + 44870634 44876665 L1PA2 6032 + 0 6029 283 6019 2 0 10 chain 332698 chr6 170805979 + 44878627 44882722 L1P3 4156 + 0 4139 6173 179 7 8 64 12 11 8 1 0 49 6 5 1070 5 8 850 0 4 112 0 19 69 0 7 53 0 8 105 0 1 28 1 3 18 0 1 415 0 3 232 1 0 170 1 0 22 1 0 24 0 4 201 13 13 343 9 6 26 chain 551349 chr6 170805979 + 44884630 44890768 L1PA3long 6157 + 4 6157 646 706 0 1 25 0 1 798 1 0 1860 0 4 1411 0 5 518 0 3 47 0 1 623 0 1 149 chain 29575 chr6 170805979 + 44890777 44891139 L1PA7 6471 + 6086 6470 42510 17 0 7 118 0 14 70 1 2 156 chain 534487 chr6 170805979 + 44900043 44906175 L1PA4 6152 + 6 6143 1640 20 0 1 1007 1 0 1291 8 0 201 0 2 1360 0 1 251 0 12 1123 8 9 464 4 0 150 1 0 105 1 2 66 0 1 71 chain 28029 chr6 170805979 + 44928613 44928911 AluYd8 298 + 0 298 44818 298 chain 63483 chr6 170805979 + 44948654 44949388 L1PA5 6144 + 5397 6132 25529 459 0 1 275 chain 3656 chr6 170805979 + 44965345 44965398 Charlie17a 212 - 158 212 93949 40 3 4 10 chain 3350 chr6 170805979 + 45054097 45054148 MER39 703 + 591 643 96597 14 1 2 36 chain 103513 chr6 170805979 + 45055194 45056730 L1PB1 5432 + 3839 5321 17878 15 0 1 217 16 10 32 0 1 49 0 4 217 18 16 225 3 0 88 1 0 54 5 0 110 0 1 219 15 16 24 63 32 50 2 1 14 2 1 45 1 0 14 24 13 13 chain 78866 chr6 170805979 + 45059156 45060164 L1PA10 4194 + 3154 4150 21905 357 1 2 231 25 17 315 2 0 40 3 0 34 chain 556179 chr6 170805979 + 45062447 45068476 L1PA2 6032 + 0 6032 350 929 0 2 2129 0 1 756 1 0 1362 0 1 852 chain 250744 chr6 170805979 + 45142765 45146303 L1PB2 3958 + 268 3838 8214 61 0 1 22 0 6 13 0 2 81 9 6 30 0 3 210 20 26 268 7 6 22 0 3 23 0 2 210 0 2 4 1 0 49 5 6 147 35 36 89 2 0 54 14 16 105 18 19 98 0 38 80 4 5 118 17 18 87 2 0 115 18 1 17 0 2 197 8 12 346 1 0 355 0 4 24 2 0 51 1 0 19 7 1 61 2 0 12 4 0 89 2 0 77 1 0 54 9 8 11 0 1 62 2 0 22 1 0 63 chain 520606 chr6 170805979 + 45176063 45181869 L1PA3long 6157 + 0 6150 2249 152 0 1 102 0 1 485 0 1 19 10 143 1375 0 1 112 0 4 686 0 187 222 1 2 483 0 9 175 0 3 1144 0 3 840 chain 39783 chr6 170805979 + 45210122 45210741 MER4A1_ 611 + 3 611 34835 56 27 29 34 0 2 170 18 1 27 4 7 55 32 31 196 chain 3080 chr6 170805979 + 45215370 45215409 L1M2 1805 + 558 597 98979 39 chain 23636 chr6 170805979 + 45218447 45218741 AluSp 311 + 0 289 51373 125 8 3 161 chain 49863 chr6 170805979 + 45220772 45221376 L1PA6 6164 + 5544 6160 29614 14 0 10 407 1 2 5 1 0 62 0 2 114 chain 36194 chr6 170805979 + 45235729 45236234 MER9a3 513 + 0 513 37272 12 1 3 85 10 11 147 1 0 29 0 1 127 0 2 17 16 19 60 chain 361035 chr6 170805979 + 45236892 45241193 HERVK9-int 4720 + 334 4720 5792 1247 1 0 4 1 3 140 0 3 340 9 1 65 2 0 179 10 8 13 0 1 714 0 4 623 0 56 38 0 1 221 0 1 131 0 3 106 17 19 57 0 1 46 0 24 337 chain 39199 chr6 170805979 + 45241193 45241700 MER9a3 513 + 0 513 35214 19 3 1 90 0 1 147 1 0 29 0 1 19 0 4 123 1 2 7 0 2 68 chain 28730 chr6 170805979 + 45277919 45278303 L1PA7 6471 + 6103 6468 43744 157 0 3 42 16 0 8 5 1 145 2 0 9 chain 456277 chr6 170805979 + 45281107 45286618 L1PA4 6152 + 1 5517 4225 104 0 1 530 0 3 561 0 3 33 1 0 197 0 1 176 218 0 6 0 218 1071 12 5 299 2 0 50 0 2 472 5 7 955 1 0 96 1 0 509 0 5 212 chain 371699 chr6 170805979 + 45291076 45296869 L1PB1 5432 + 77 5418 5623 54 0 2 69 0 3 130 8 5 71 3 2 112 4 5 58 4 8 41 4 6 58 0 2 49 1 4 6 0 2 404 10 11 218 2 0 13 36 4 158 4 0 921 6 0 42 17 21 274 6 4 48 4 7 119 1 0 80 4 5 112 0 6 324 0 3 159 0 1 38 17 1 174 3 0 46 1 0 174 0 5 55 0 3 5 7 0 15 7 14 276 26 8 109 0 1 114 0 28 8 3 4 28 14 14 165 12 15 16 0 2 87 1 2 10 666 226 5 2 0 24 1 0 22 1 0 12 1 0 14 chain 5544 chr6 170805979 + 45296973 45297057 L1PB1 5432 + 5341 5420 83054 5 2 0 24 1 0 22 1 0 12 1 0 16 chain 5297 chr6 170805979 + 45302931 45302993 L1PB1 5432 + 4123 4185 84206 62 chain 40484 chr6 170805979 + 45302994 45303519 L1PB1 5432 + 4195 4717 34318 5 3 0 307 6 5 114 3 0 36 0 4 51 chain 161595 chr6 170805979 + 45306659 45308584 L1P1 4361 + 4 1969 11637 222 14 30 64 0 1 693 3 2 198 0 11 222 6 4 110 0 12 220 0 2 37 0 1 136 chain 57709 chr6 170805979 + 45312537 45313273 L1PB1 5432 + 1718 2450 27046 116 0 1 27 11 3 49 0 4 49 2 0 60 0 1 422 chain 2817 chr6 170805979 + 45313279 45313314 L1PB1 5432 + 2460 2495 101540 35 chain 215620 chr6 170805979 + 45313330 45316305 L1PB1 5432 + 2500 5413 9155 86 0 3 148 0 1 91 8 5 849 0 4 39 4 6 199 3 0 7 10 15 402 0 2 123 13 18 111 0 4 13 2 0 259 4 3 209 65 17 21 1 0 12 16 11 9 2 0 53 2 1 16 1 0 44 1 0 15 1 0 5 20 9 17 8 5 14 2 0 24 1 0 21 1 0 13 1 0 9 chain 5599 chr6 170805979 + 45624368 45624445 MADE1 96 + 0 93 82809 30 3 19 44 chain 5513 chr6 170805979 + 45646103 45646167 U6 107 + 0 64 83185 64 chain 7633 chr6 170805979 + 45692781 45693261 L1PB1 5432 + 5260 5404 75792 21 1 0 20 19 7 19 327 8 11 2 0 24 1 0 21 1 0 13 chain 115329 chr6 170805979 + 45694996 45696290 L1PA4 6152 + 3891 5188 16338 489 0 1 489 1 0 4 8 11 303 chain 4315 chr6 170805979 + 45779902 45780006 X7C_LINE 204 + 56 160 89405 24 38 39 7 1 0 34 chain 30130 chr6 170805979 + 45994252 45994601 L1PA8A 6298 + 5942 6291 41913 349 chain 73198 chr6 170805979 + 45996720 45997517 L1PA2 6032 + 5235 6032 23278 797 chain 10962 chr6 170805979 + 46005615 46005919 MLT1A0 366 + 8 318 68605 21 39 40 68 87 89 23 15 18 51 chain 112824 chr6 170805979 + 46069330 46070846 L1PA13 3608 + 1990 3479 16699 135 1 0 114 0 2 5 15 0 78 0 2 292 4 5 32 2 1 504 5 4 109 2 0 62 1 0 25 4 0 31 8 5 47 2 0 5 2 0 31 chain 536471 chr6 170805979 + 46119469 46125580 L1PA5 6144 + 15 6138 1533 426 7 8 1058 0 1 765 0 1 223 0 1 1179 1 0 646 0 1 665 0 7 814 2 3 325 chain 47432 chr6 170805979 + 46163810 46164326 L1PA2 6032 + 4732 5248 30494 516 chain 84125 chr6 170805979 + 46213679 46214620 L1P1 4361 + 2383 3323 20776 782 3 2 156 chain 4943 chr6 170805979 + 46241729 46241878 MIR 256 + 71 231 85916 45 77 88 27 chain 11029 chr6 170805979 + 46385884 46386316 L1PA8 5853 + 4708 5142 21956 188 5 6 108 1 0 74 0 2 56 chain 138956 chr6 170805979 + 46386708 46388254 L1PA5 6144 + 4589 6135 13193 1546 chain 17029 chr6 170805979 + 46388295 46388962 L1PA8 5853 + 5187 5853 21956 64 0 4 309 1 0 44 2 0 74 1 0 5 20 21 32 2 1 19 2 1 92 chain 11027 chr6 170805979 + 46452818 46452948 L1PA7 6471 + 6341 6470 68518 76 1 0 53 chain 113874 chr6 170805979 + 46532723 46534336 L1PA3long 6157 + 4550 6157 16566 213 7 0 33 0 2 423 0 2 6 11 9 69 1 0 850 chain 118908 chr6 170805979 + 46545127 46546950 L1MA2 4263 + 2261 4114 15723 136 2 0 87 2 1 34 11 14 60 0 1 50 5 3 255 0 1 23 12 8 34 4 0 92 4 3 103 6 7 78 0 1 30 0 5 38 1 0 162 6 1 4 0 1 57 16 19 17 4 0 58 1 0 12 8 7 95 47 50 138 1 0 10 33 78 23 8 1 16 1 2 28 1 0 10 chain 26246 chr6 170805979 + 46634058 46634408 THE1B 368 + 0 368 47354 44 0 15 110 1 0 31 4 0 84 0 8 76 chain 62479 chr6 170805979 + 46647969 46648679 L1PA5 6144 + 5441 6144 25759 549 7 0 154 chain 13803 chr6 170805979 + 46685591 46685779 L1PA7 6471 + 6285 6466 63879 150 4 3 17 6 0 11 chain 129896 chr6 170805979 + 46774418 46775964 LTR12C 1709 + 0 1709 14052 133 0 1 303 0 1 172 0 1 108 0 118 119 0 41 115 1 0 5 3 1 106 0 4 379 3 1 19 0 2 80 chain 6039 chr6 170805979 + 46816791 46816864 L1PBa1 4058 + 708 781 80931 73 chain 75483 chr6 170805979 + 46841883 46842932 MER11A 1151 + 0 1151 22719 77 0 8 143 1 0 66 0 11 41 1 0 186 9 21 129 6 9 12 1 2 40 0 4 65 0 1 15 5 63 93 15 16 55 0 2 26 8 7 19 0 4 36 chain 26221 chr6 170805979 + 46912677 46913082 MER83 447 + 0 403 47389 149 7 6 18 2 0 103 48 8 8 0 41 70 chain 69302 chr6 170805979 + 46928737 46929502 L1PA4 6152 + 5386 6151 24159 765 chain 3392 chr6 170805979 + 46958120 46958175 LTR37A 408 + 306 361 96157 4 1 0 28 2 0 8 0 3 12 chain 187045 chr6 170805979 + 46991214 46993380 L1PA6 6164 + 3980 6162 10250 383 0 1 313 1 2 538 0 7 177 0 6 554 0 2 13 0 1 76 1 4 5 3 0 92 2 0 8 chain 3295 chr6 170805979 + 47032456 47032494 MER53 195 - 132 170 97059 38 chain 72052 chr6 170805979 + 47050486 47051957 L1PA2 6032 + 4582 6032 23524 455 21 0 995 chain 26811 chr6 170805979 + 47087513 47087868 L1PA8 5853 + 5505 5853 46521 59 1 0 45 2 0 70 1 0 9 6 5 43 7 6 18 1 0 93 chain 165959 chr6 170805979 + 47087945 47089991 L1PA7 6471 + 4395 6456 11336 245 0 6 621 0 2 351 2 1 88 3 9 347 21 22 211 13 14 144 chain 4127 chr6 170805979 + 47110344 47110391 AluSx 319 - 114 161 90604 47 chain 81781 chr6 170805979 + 47172732 47173695 L1PA6 6164 + 5195 6159 21283 129 1 4 674 15 16 136 3 0 5 chain 258827 chr6 170805979 + 47189202 47192142 L1PA4 6152 + 3212 6151 8000 2586 4 10 194 1 2 133 6 0 9 2 0 5 chain 326156 chr6 170805979 + 47210703 47215602 L1PA11 4918 + 0 4564 6282 13 14 0 29 2 0 36 4 1 36 1 0 12 9 7 47 1 0 32 2 0 5 2 1 79 3 0 52 3 5 18 2 0 89 0 1 9 0 3 32 6 23 81 315 0 44 0 12 85 32 8 397 0 1 4 9 11 65 1 3 132 0 22 19 0 1 12 0 8 278 4 0 23 6 7 72 3 0 11 1 2 24 3 5 95 0 3 95 1 0 180 0 1 9 6 1 101 0 1 14 0 1 4 0 3 44 7 1 130 15 0 501 0 1 21 0 3 62 0 2 188 0 2 77 5 1 6 0 4 800 2 1 54 11 12 38 0 4 10 6 1 65 45 39 34 7 6 16 2 1 19 4 0 9 8 3 10 15 11 13 1 0 10 chain 116426 chr6 170805979 + 47218680 47219984 L1PA4 6152 + 2861 4166 16151 916 0 1 388 chain 40477 chr6 170805979 + 47221527 47222097 LTR9B 643 + 9 626 34323 61 0 3 10 0 37 83 3 5 17 0 1 5 21 18 5 0 3 172 9 10 66 0 3 118 chain 472811 chr6 170805979 + 47270102 47275663 L1PA6 6164 + 584 6161 3792 672 1 0 390 0 3 969 0 1 570 0 1 83 0 2 629 0 3 379 0 23 58 1 2 112 0 1 15 0 2 180 8 7 167 2 0 169 0 1 522 24 8 280 0 1 320 3 0 7 chain 515418 chr6 170805979 + 47327838 47333985 L1PA6 6164 + 0 6162 2497 63 1 2 80 26 26 315 12 13 68 2 1 655 0 1 422 0 3 78 0 1 123 13 0 168 0 6 99 1 2 14 0 1 189 1 0 855 6 7 80 0 5 1203 0 1 544 1 0 102 0 1 184 0 4 28 0 1 351 0 2 305 6 14 6 7 0 139 chain 73348 chr6 170805979 + 47339152 47340368 L1PB1 5432 + 4236 5422 23247 91 15 3 200 9 10 6 0 1 52 30 27 37 35 46 190 0 2 181 0 3 18 19 15 20 8 6 12 2 0 3 2 0 9 2 0 52 2 1 15 1 0 45 1 0 9 28 18 18 3 1 5 1 0 14 7 5 19 2 1 20 1 0 12 5 4 15 chain 79785 chr6 170805979 + 47384706 47385758 MER11C 1089 + 0 1063 21668 250 0 1 62 0 4 215 61 62 90 12 15 38 0 1 127 0 1 197 chain 37531 chr6 170805979 + 47430771 47431251 LTR10F 562 + 0 562 36382 171 1 60 85 0 25 48 3 1 110 1 2 4 1 0 56 chain 113311 chr6 170805979 + 47470546 47472641 L1MA3 4352 + 2587 4352 16630 127 2 0 6 6 8 58 1 0 15 0 5 6 8 3 229 18 19 36 2 0 39 1 0 52 1 0 30 0 1 161 1 2 13 5 6 51 310 0 210 1 0 33 7 4 51 1 2 193 5 6 73 2 0 18 108 106 85 4 0 23 2 0 24 2 1 5 1 0 29 1 0 11 6 2 22 chain 8740 chr6 170805979 + 47531502 47531605 LTR61 567 + 464 567 73117 103 chain 330512 chr6 170805979 + 47546553 47551171 L1PB1 5432 + 827 5420 6208 66 0 1 243 2 6 16 1 2 103 0 3 6 4 1 121 1 0 7 15 0 142 1 5 39 0 2 11 7 12 27 0 10 119 7 5 72 4 8 58 0 2 108 12 13 248 0 1 21 0 2 26 47 11 31 13 19 13 0 2 6 3 1 79 3 1 340 4 0 5 2 0 47 1 4 42 0 2 400 0 1 401 10 0 52 1 0 5 0 1 14 0 3 108 5 7 63 0 1 460 0 2 75 0 4 88 0 1 31 6 7 28 0 1 16 10 12 77 1 4 6 0 4 6 0 3 144 3 10 132 3 0 9 4 3 23 1 0 7 4 3 9 6 2 8 2 0 53 2 1 15 1 0 44 1 0 16 2 0 7 16 5 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 10 1 0 19 chain 52402 chr6 170805979 + 47598061 47598884 L1PB1 5432 + 4626 5414 28755 115 0 1 54 1 0 209 1 0 44 1 2 52 1 2 9 5 0 24 11 9 11 5 1 9 2 0 17 0 1 34 19 17 44 1 0 15 3 0 6 1 0 10 9 0 11 2 0 9 1 0 14 2 0 24 1 0 21 1 0 13 2 1 9 chain 11863 chr6 170805979 + 47612649 47612830 L1MA3 4352 + 3868 4056 67088 27 5 4 59 0 9 25 1 3 31 3 0 30 chain 39253 chr6 170805979 + 47634757 47635217 LTR2 463 + 0 463 35178 129 0 3 331 chain 410159 chr6 170805979 + 47642653 47647686 Harlequin-int 5206 + 126 5206 5020 6 0 3 14 12 0 123 19 17 11 1 0 183 1 0 199 1 0 374 0 6 145 0 3 127 0 4 335 0 1 881 1 12 110 0 3 456 0 1 501 1 3 109 12 10 115 2 0 5 8 10 218 0 30 11 0 1 138 0 1 513 0 1 5 1 0 395 chain 35650 chr6 170805979 + 47647701 47648143 LTR2 463 + 17 463 37631 112 8 11 71 0 1 251 chain 8837 chr6 170805979 + 47706492 47706670 MER20 218 + 0 197 72899 14 57 76 107 chain 2917 chr6 170805979 + 47709516 47709549 MER53 195 - 32 65 100690 33 chain 23243 chr6 170805979 + 47756021 47756365 THE1B 368 + 0 368 52011 40 0 15 117 1 0 26 35 45 125 chain 6148 chr6 170805979 + 47820048 47820121 MER58A 224 + 44 117 80540 73 chain 4600 chr6 170805979 + 47850384 47850492 L1PB1 5432 + 5327 5427 87796 5 1 0 14 2 0 16 9 8 21 6 5 8 1 0 18 2 0 5 chain 39238 chr6 170805979 + 47889551 47889983 L1PA3long 6157 + 4843 5275 35185 432 chain 16681 chr6 170805979 + 47962389 47962741 THE1C 375 + 0 339 60172 13 3 1 56 14 16 18 3 0 5 6 7 45 13 5 19 31 32 11 4 6 9 6 0 96 chain 7264 chr6 170805979 + 47963266 47963514 L1MA9 1812 + 1445 1665 76785 12 1 0 15 121 95 13 1 0 5 0 2 29 2 0 49 chain 90890 chr6 170805979 + 48000922 48001953 L1PA4 6152 + 4306 5334 19525 193 1 0 238 2 0 597 chain 507042 chr6 170805979 + 48102475 48108200 L1PA4 6152 + 0 5740 2888 213 0 8 818 1 4 201 1 0 1652 0 3 610 1 0 778 0 2 83 1 0 27 0 1 552 0 1 787 chain 82747 chr6 170805979 + 48152301 48153326 MER11A 1151 + 0 1151 21075 55 0 99 22 8 0 23 1 0 94 4 0 95 0 1 39 0 1 250 0 1 128 0 1 10 6 40 31 0 1 80 0 1 179 chain 91609 chr6 170805979 + 48201746 48202813 MER11C 1089 + 0 1073 19396 61 2 1 158 0 5 725 0 2 121 chain 58518 chr6 170805979 + 48217420 48218224 L1PBa 3878 + 1292 2058 26809 308 3 0 7 3 0 5 57 23 48 1 3 372 chain 39086 chr6 170805979 + 48224104 48224576 MER4A1 472 + 0 472 35298 472 chain 26188 chr6 170805979 + 48242332 48242661 THE1C 375 + 0 328 47448 70 2 1 257 chain 2897 chr6 170805979 + 48276264 48276297 MLT1E2 623 + 533 566 100865 33 chain 25302 chr6 170805979 + 48294044 48294347 L1P1 4361 + 3128 3438 48780 80 0 1 43 0 5 36 0 1 144 chain 2993 chr6 170805979 + 48327258 48327293 Tigger4a 237 + 200 235 99936 35 chain 3011 chr6 170805979 + 48327935 48327986 MADE1 96 - 28 96 99729 15 5 22 31 chain 48072 chr6 170805979 + 48335014 48335540 L1PA4 6152 + 5610 6136 30268 526 chain 33422 chr6 170805979 + 48344703 48345084 L1PA4 6152 + 5774 6152 39157 230 3 0 148 chain 11963 chr6 170805979 + 48351396 48351552 L1PA8 5853 + 5699 5853 66898 40 4 3 18 1 0 93 chain 544226 chr6 170805979 + 48363092 48369117 L1PA3long 6157 + 0 6157 1074 152 14 15 88 0 1 525 0 128 5098 0 1 11 0 1 137 chain 10535 chr6 170805979 + 48380869 48380987 L1PA4 6152 + 6034 6151 69349 100 1 0 17 chain 183000 chr6 170805979 + 48450929 48454185 L1PB1 5432 + 2735 5423 10438 67 17 21 19 2 0 149 16 18 227 0 1 6 2 0 269 3 1 116 0 15 66 1 0 12 9 10 163 6 5 49 1 2 4 0 1 216 1 2 182 2 3 267 3 0 144 517 0 34 12 11 245 89 54 24 1 0 4 5 4 10 7 3 9 2 0 44 10 9 10 9 8 57 24 12 19 1 0 4 6 4 13 2 0 22 1 0 22 1 0 12 1 0 8 1 0 11 chain 14588 chr6 170805979 + 48493600 48493760 L1PA3long 6157 + 3033 3193 62813 160 chain 268157 chr6 170805979 + 48493764 48496723 L1PA3long 6157 + 3198 6157 7754 2959 chain 103383 chr6 170805979 + 48502772 48504040 L1PA7 6471 + 5162 6470 17904 223 4 5 83 0 1 142 1 29 40 0 7 283 0 1 162 0 1 245 0 3 78 2 0 5 chain 27393 chr6 170805979 + 48512916 48513225 L1PA5 6144 + 5831 6140 45717 309 chain 17001 chr6 170805979 + 48530938 48531126 L1PA2 6032 + 5833 6021 59802 188 chain 75107 chr6 170805979 + 48538152 48539027 L1PA5 6144 + 5267 6143 22816 26 0 5 708 7 6 119 3 0 12 chain 3975 chr6 170805979 + 48541639 48541729 MER91B 187 + 13 113 91612 18 29 39 43 chain 3416 chr6 170805979 + 48576019 48576058 MER21A 919 + 535 574 95941 39 chain 8325 chr6 170805979 + 48583795 48583889 L1PA7 6471 + 6364 6458 74096 94 chain 6331 chr6 170805979 + 48628504 48628635 LTR23 429 + 9 142 79889 65 44 46 22 chain 34050 chr6 170805979 + 48643105 48643532 LOR1a 498 + 14 452 38671 33 0 1 166 0 10 228 chain 295648 chr6 170805979 + 48682212 48686019 L1PA7 6471 + 2570 6399 6960 62 14 0 48 0 1 227 0 1 12 7 6 524 2 1 48 1 0 30 1 0 7 7 11 281 1 0 168 4 0 168 0 1 190 0 1 975 1 8 7 0 1 5 8 0 256 5 4 19 0 2 5 1 0 218 1 2 151 12 13 36 0 1 117 0 1 69 0 33 119 chain 46829 chr6 170805979 + 48711875 48712409 L1PA4 6152 + 5607 6143 30718 210 0 1 183 0 1 141 chain 39635 chr6 170805979 + 48722437 48722862 L1PA3long 6157 + 5466 5891 34937 425 chain 23652 chr6 170805979 + 48722869 48723127 L1PA3long 6157 + 5899 6157 51352 258 chain 544689 chr6 170805979 + 48737348 48743374 L1PA3long 6157 + 2 6157 1044 68 0 1 81 0 1 623 0 128 3018 2 1 2234 chain 18984 chr6 170805979 + 48824581 48824819 AluSp 311 + 58 297 57567 76 3 4 159 chain 29404 chr6 170805979 + 48837282 48837746 LTR7B 505 + 0 505 42729 108 0 10 57 0 38 12 3 27 28 29 0 42 0 1 36 1 0 82 21 20 11 0 1 7 2 0 25 chain 15141 chr6 170805979 + 48850003 48850337 L1PB1 5432 + 5115 5417 62111 23 26 20 11 3 1 50 2 1 16 1 0 43 1 0 16 25 13 18 3 0 19 2 0 24 1 0 21 1 0 13 1 0 9 1 0 4 chain 49211 chr6 170805979 + 48873675 48874257 LTR14C 587 + 0 587 29861 129 0 1 360 0 4 93 chain 5783 chr6 170805979 + 48878263 48878629 HERVK14C-int 762 + 570 757 82006 43 140 66 8 1 0 10 1 0 21 121 18 21 chain 48350 chr6 170805979 + 48879140 48879725 LTR14C 587 + 0 587 30166 11 1 3 573 chain 64250 chr6 170805979 + 48944327 48945104 L1PA4 6152 + 5407 6151 25360 24 7 0 92 5 3 38 35 11 576 chain 82431 chr6 170805979 + 48984020 48985137 LTR12C 1709 + 258 1709 21145 76 14 57 73 2 0 5 2 0 43 6 7 90 1 2 39 0 278 143 0 47 99 42 11 392 6 5 84 chain 13300 chr6 170805979 + 48993997 48994330 L1PB1 5432 + 5121 5423 64616 17 1 0 8 1 0 12 26 20 34 1 0 8 4 3 13 1 0 45 1 0 8 30 20 17 26 21 23 1 0 21 1 0 13 1 0 14 1 0 5 chain 477078 chr6 170805979 + 49058228 49063623 L1PA4 6152 + 581 5976 3695 155 1 0 246 0 1 261 2 1 4074 1 2 655 chain 360958 chr6 170805979 + 49097380 49102042 L1PA6 6164 + 2 6161 5793 102 29 15 82 0 1 84 55 0 7 0 51 115 3 4 4 1 0 42 2 1 429 0 25 211 15 24 1132 5 7 846 2 1 271 0 1488 870 5 0 196 1 2 5 1 0 94 11 8 42 chain 83920 chr6 170805979 + 49106149 49107093 L1P1 4361 + 2516 3458 20827 45 0 1 603 3 0 293 chain 11775 chr6 170805979 + 49115252 49115474 MER75 514 + 11 204 67261 42 67 38 113 chain 13682 chr6 170805979 + 49138003 49138158 L1P1 4361 + 3286 3441 64036 155 chain 70053 chr6 170805979 + 49163429 49164556 L1PB1 5432 + 4314 5404 23984 227 1 2 78 1 0 5 2 0 167 7 5 35 6 5 262 0 3 13 12 1 21 1 0 4 41 35 21 6 7 15 2 1 16 0 3 40 1 0 16 2 0 6 1 0 11 9 0 9 30 25 23 1 0 22 1 0 12 chain 54202 chr6 170805979 + 49228028 49228705 L1PA8 5853 + 4374 5055 28155 135 5 0 7 0 5 104 0 1 379 1 4 46 chain 27536 chr6 170805979 + 49251894 49252243 L1PA7 6471 + 6126 6469 45540 5 1 0 97 6 0 50 0 2 50 1 2 127 2 0 10 chain 527376 chr6 170805979 + 49274563 49281917 L1PA5 6144 + 3 6144 1939 127 1 33 564 1255 0 1585 0 1 172 0 1 610 0 1 60 0 1 4 1 2 6 2 0 32 1 0 482 0 2 971 0 1 412 0 1 222 1 5 703 0 1 130 2 1 11 chain 8672 chr6 170805979 + 49275915 49276015 LTR12C 1709 + 932 1032 73283 100 chain 24261 chr6 170805979 + 49323822 49324176 L1PB2 3958 + 3451 3803 50403 90 1 0 77 1 0 54 22 21 42 0 2 35 1 0 31 chain 3977 chr6 170805979 + 49337350 49337395 U5 65 + 0 45 91588 45 chain 32799 chr6 170805979 + 49340741 49341215 MER4A1 472 + 20 472 39671 48 4 5 33 0 1 54 0 1 54 4 5 25 0 1 58 29 0 26 0 2 139 chain 4809 chr6 170805979 + 49355863 49355916 MER2 342 + 162 215 86649 53 chain 28935 chr6 170805979 + 49373890 49374252 MLT2A1 477 + 0 383 43426 169 0 4 21 0 1 7 0 16 165 chain 540916 chr6 170805979 + 49386886 49392903 L1PA3long 6157 + 4 6157 1289 147 3 4 189 1 2 422 8 136 296 0 1 1759 0 3 229 0 1 1815 0 1 1148 chain 15623 chr6 170805979 + 49396447 49396843 L1PB1 5432 + 5064 5422 61502 15 26 26 12 5 0 21 39 31 51 1 2 15 2 1 40 5 0 4 1 0 14 2 0 15 9 0 15 12 9 11 2 0 24 1 0 22 1 0 12 7 6 12 chain 24594 chr6 170805979 + 49428811 49429203 L1PA8 5853 + 5463 5853 49873 101 1 0 44 2 0 31 0 9 27 6 5 12 29 27 21 2 1 10 2 0 9 1 0 52 1 0 41 chain 28097 chr6 170805979 + 49438616 49439018 MLT2A1 477 + 0 397 44724 29 1 6 87 3 1 45 6 2 11 0 1 21 0 1 86 0 1 6 1 0 88 6 0 12 chain 364078 chr6 170805979 + 49473414 49477577 L1PA5 6144 + 1873 6144 5751 321 0 2 188 7 8 269 0 1 370 0 7 204 0 4 38 1 0 127 0 1 199 0 76 138 0 8 794 5 6 255 0 1 407 0 4 700 0 1 29 1 0 5 0 3 22 0 1 36 1 0 46 chain 33525 chr6 170805979 + 49563074 49563529 Charlie3 2679 + 18 476 39065 17 1 0 25 11 8 4 0 1 93 2 0 117 4 5 111 1 5 39 0 3 30 chain 533183 chr6 170805979 + 49598563 49604673 L1PA5 6144 + 0 6138 1700 749 0 1 404 0 3 635 0 6 280 0 1 393 1 15 663 0 1 1394 1 2 71 5 4 7 0 1 1009 1 2 497 chain 25873 chr6 170805979 + 49609878 49610231 L1PA8 5853 + 5503 5850 47909 61 1 0 45 2 0 68 1 0 9 1 0 52 4 3 19 5 4 72 0 1 13 chain 5058 chr6 170805979 + 49622056 49622134 THE1B 368 + 0 81 85369 15 8 6 16 0 5 39 chain 26260 chr6 170805979 + 49641887 49642188 AluYk4 311 + 0 303 47337 191 0 2 110 chain 30031 chr6 170805979 + 49663946 49664309 L1PA7 6471 + 5837 6201 42023 125 0 1 238 chain 244629 chr6 170805979 + 49670513 49673480 L1PA6 6164 + 3181 6162 8362 59 6 10 15 0 3 422 6 7 42 2 1 5 0 1 720 0 3 628 5 5 206 0 4 846 1 0 4 chain 9316 chr6 170805979 + 49715822 49715942 MER51-int 1546 + 622 742 71877 120 chain 13979 chr6 170805979 + 49722601 49722792 MER50 708 + 495 685 63626 136 11 10 44 chain 5836 chr6 170805979 + 49801038 49801101 THE1A-int 1579 + 1439 1502 81757 63 chain 26666 chr6 170805979 + 49801483 49801836 THE1A 353 + 0 353 46735 20 5 6 44 1 0 4 0 1 37 1 0 241 chain 243053 chr6 170805979 + 49806467 49810382 L1PA11 4918 + 2 4628 8400 40 7 5 31 4 1 36 1 0 12 6 4 50 1 0 32 2 0 5 2 1 43 17 17 60 59 62 122 17 6 90 0 3 67 0 3 393 0 1 196 6 1 437 0 1 92 0 1 33 0 14 42 366 1109 196 0 1 4 8 7 12 0 4 81 0 2 51 2 0 270 2 1 22 1 0 4 0 14 401 12 8 238 5 0 65 2 1 13 3 0 41 1 0 4 0 1 19 2 0 15 2 1 13 51 38 15 1 0 9 64 48 17 chain 127080 chr6 170805979 + 49874549 49876468 L1PA11 4918 + 2666 4578 14410 30 28 25 216 1 0 23 7 5 7 1 0 255 1 3 44 39 33 118 1 17 220 23 23 233 9 11 216 5 6 77 4 8 152 9 8 4 0 1 6 2 0 67 2 0 14 1 0 6 0 1 13 44 31 15 1 0 13 1 0 11 chain 382966 chr6 170805979 + 49892716 49898746 L1PB1 5432 + 80 5424 5428 326 4 2 203 17 21 120 0 7 85 0 3 30 0 1 44 2 38 145 0 1 136 0 4 81 0 8 60 1 0 7 2 0 4 5 0 4 7 0 677 0 1 14 0 1 396 4 0 79 5 7 92 1 4 133 28 13 15 1 0 179 19 32 107 0 3 96 0 1 342 4 1 38 10 0 84 4 0 402 10 6 34 0 4 55 0 5 320 1 0 62 11 8 477 0 5 11 693 0 24 1 0 9 16 11 11 2 0 51 2 1 12 6 4 43 1 0 16 1 0 4 19 8 19 24 19 24 1 0 21 2 1 12 1 0 16 1 0 4 chain 22674 chr6 170805979 + 49933855 49934156 LTR12C 1709 + 1405 1709 52862 32 5 7 26 3 5 146 5 4 84 chain 100943 chr6 170805979 + 50081325 50082632 L1PA11 4918 + 3001 4321 18193 665 2 0 13 28 24 171 2 20 119 0 1 307 chain 32353 chr6 170805979 + 50276009 50276382 L1PA5 6144 + 4643 5018 40075 5 0 2 368 chain 476767 chr6 170805979 + 50343727 50349209 L1PA4 6152 + 0 5492 3701 1528 1 0 2022 0 1 129 0 1 259 0 1 338 0 9 336 1 0 868 chain 150803 chr6 170805979 + 50356593 50358656 HERVL-int 5654 + 3517 5654 12299 26 1 0 327 0 1 111 12 97 19 0 3 594 16 17 45 0 1 33 6 8 21 10 11 383 44 27 19 0 1 49 3 0 123 2 0 107 6 5 16 1 2 49 16 18 24 chain 3306 chr6 170805979 + 50383302 50383339 LTR40a 516 + 443 480 96965 37 chain 19669 chr6 170805979 + 50409946 50410179 L1PA7 6471 + 6226 6459 56829 233 chain 27029 chr6 170805979 + 50421114 50421458 THE1A 353 + 11 353 46227 98 2 1 45 1 0 198 chain 530251 chr6 170805979 + 50477537 50483641 L1PA4 6152 + 0 6146 1817 189 0 13 954 0 3 101 2 16 1894 0 1 1177 0 4 142 0 1 139 0 1 279 1 2 382 0 4 487 2 1 107 1 2 247 chain 85274 chr6 170805979 + 50488290 50489348 L1PA7 6471 + 5405 6467 20577 68 0 5 143 0 3 161 4 1 499 2 3 171 2 0 8 chain 12575 chr6 170805979 + 50529869 50530145 L1PB1 5432 + 5168 5422 65841 52 2 1 16 8 7 36 1 0 12 28 16 18 3 1 5 1 0 14 4 2 22 1 0 10 1 2 9 1 0 13 1 0 18 chain 1869 chr6 170805979 + 50619549 50619860 L1PB1 5432 + 4511 4803 32837 118 12 1 164 8 0 9 chain 532894 chr6 170805979 + 50619864 50626003 L1PA4 6152 + 6 6151 1716 366 10 12 196 1 0 155 0 1 500 2 0 1090 1 2 503 1 5 412 0 1 2902 chain 3833 chr6 170805979 + 50626051 50626689 L1PB1 5432 + 4828 5430 32837 264 1 13 11 11 0 22 7 1 5 1 0 12 19 13 51 2 1 16 9 8 36 1 0 15 3 0 17 61 47 10 1 0 22 1 0 12 1 0 22 1 0 4 chain 63285 chr6 170805979 + 50771677 50772394 L1PA5 6144 + 5415 6137 25566 58 0 4 485 0 1 174 chain 56027 chr6 170805979 + 50894371 50894974 L1PA2 6032 + 4823 5426 27555 603 chain 3894 chr6 170805979 + 50946212 50946257 MADE1 96 + 1 46 92183 45 chain 2834 chr6 170805979 + 50955113 50955144 MER3 215 - 137 168 101368 31 chain 92074 chr6 170805979 + 51009646 51010784 L1PA7 6471 + 4268 5388 19329 120 31 8 220 0 1 51 0 4 105 0 3 168 4 1 295 1 0 109 0 1 34 chain 9482 chr6 170805979 + 51027618 51027757 MSTB 430 + 13 151 71513 103 0 14 8 15 0 13 chain 32513 chr6 170805979 + 51051784 51052228 MLT2A1 477 + 0 477 39934 97 0 2 69 5 2 215 6 0 8 7 47 37 chain 439214 chr6 170805979 + 51052228 51058302 HERVL-int 5654 + 0 5654 4583 341 3 6 223 0 21 242 1 0 207 2 1 219 1 0 363 5 1 53 2 1 46 0 2 85 23 22 247 4 13 319 0 8 336 1 11 17 0 1 544 7 14 436 22 23 630 16 21 13 0 5 28 4 3 59 0 3 63 0 11 20 0 11 72 0 1 14 6 5 135 0 2 233 0 1 70 0 1 11 5 4 202 0 1 13 0 1 55 516 4 32 20 19 19 2 3 87 chain 30749 chr6 170805979 + 51058302 51058688 MLT2A1 477 + 0 391 41353 168 1 5 199 0 1 18 chain 86064 chr6 170805979 + 51103349 51104325 L1PA3long 6157 + 5187 6157 20422 236 6 0 734 chain 5927 chr6 170805979 + 51112053 51112166 MER96B 391 - 56 165 81372 36 30 26 47 chain 545353 chr6 170805979 + 51121444 51127584 L1PA3long 6157 + 6 6157 1015 454 10 11 696 1 4 69 0 1 1132 0 1 1638 0 4 134 11 10 4 0 1 1984 0 1 7 chain 119767 chr6 170805979 + 51142696 51144131 L1PA6 6164 + 4721 6161 15571 327 0 1 44 5 5 215 1 5 843 chain 7607 chr6 170805979 + 51187136 51187251 Tigger3d 321 + 13 128 75852 28 3 5 5 2 0 77 chain 501761 chr6 170805979 + 51224349 51230085 L1PA4 6152 + 6 5737 3065 114 0 1 2000 8 0 79 0 2 966 5 0 9 0 1 503 0 1 464 9 8 4 0 1 128 0 2 15 0 1 1432 chain 68370 chr6 170805979 + 51243155 51244210 L1PB1 5432 + 4402 5417 24364 43 1 0 110 4 0 73 13 10 24 5 7 36 0 2 98 11 12 191 2 0 5 0 2 86 1 0 13 3 0 24 1 0 9 17 12 8 2 0 53 2 1 15 1 0 45 1 0 15 4 0 6 16 6 19 2 0 5 1 0 14 2 0 27 1 0 17 1 0 14 1 0 13 chain 64742 chr6 170805979 + 51280052 51280865 LTR12C 1709 + 696 1709 25250 103 2 111 202 1 0 7 2 0 105 11 4 212 0 1 10 3 104 72 1 0 82 chain 115671 chr6 170805979 + 51332783 51334042 L1PA3long 6157 + 4485 5744 16293 1259 chain 22640 chr6 170805979 + 51413433 51413792 THE1C 375 + 0 364 52927 51 37 35 99 1 2 5 0 5 35 5 7 110 1 0 15 chain 236444 chr6 170805979 + 51421627 51425275 L1PB1 5432 + 1921 5423 8558 99 0 1 429 9 10 39 0 1 135 0 41 154 6 0 11 2 1 45 1 4 266 220 9 189 8 49 73 4 0 259 1 2 61 39 43 140 0 1 389 1 0 73 1 2 57 12 13 110 2 0 71 3 4 223 19 30 59 0 2 87 1 2 8 2 1 24 1 0 8 1 0 10 7 3 9 2 0 51 20 18 45 1 0 14 1 0 4 2 0 5 43 32 9 2 0 20 5 4 22 1 0 12 1 0 12 1 0 7 chain 15307 chr6 170805979 + 51422835 51423027 L1PB1 5432 + 1965 2158 61906 120 0 1 72 chain 6027 chr6 170805979 + 51598620 51598862 LTR12D 1347 + 501 763 80982 34 1 32 14 121 28 43 10 92 19 chain 68746 chr6 170805979 + 51599451 51600581 L1PB1 5432 + 4294 5423 24272 17 1 2 319 4 0 85 0 28 58 0 1 40 0 1 8 0 1 129 0 2 98 21 24 7 5 0 24 1 0 6 1 0 13 27 21 42 2 4 50 11 10 12 2 0 6 64 48 23 7 6 12 1 0 13 1 0 14 1 0 5 chain 4826 chr6 170805979 + 51629720 51629823 Charlie1a 1436 + 443 538 86563 14 2 3 33 23 14 31 chain 56506 chr6 170805979 + 51641367 51642044 L1PA7 6471 + 5772 6459 27426 40 1 13 203 0 1 209 7 4 217 chain 52491 chr6 170805979 + 51655773 51656451 L1PA8 5853 + 5129 5797 28736 230 4 0 118 0 1 86 1 0 45 2 0 73 1 0 5 4 3 50 2 1 18 3 2 36 chain 114579 chr6 170805979 + 51688363 51689991 L1PA13 3608 + 1754 3365 16464 135 8 4 10 4 2 28 5 2 8 1 0 19 1 5 127 15 0 106 6 7 137 0 3 67 2 1 94 0 1 219 8 10 393 2 1 26 7 6 10 16 18 5 1 0 59 0 1 15 2 0 52 0 1 10 1 0 29 chain 22260 chr6 170805979 + 51702049 51702570 L1PB1 5432 + 5004 5421 53461 76 0 3 11 83 11 9 3 0 21 1 0 4 0 4 6 5 0 7 2 0 3 2 0 9 2 0 52 2 1 15 1 0 39 50 37 15 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 12 1 0 5 chain 6940 chr6 170805979 + 51721152 51721239 MER85 139 + 41 139 77810 53 0 11 34 chain 4629 chr6 170805979 + 51745722 51745788 MSTD 398 + 331 398 87648 54 2 3 10 chain 37109 chr6 170805979 + 51804800 51805344 L1PA16 3655 + 3013 3556 36673 187 6 5 68 0 1 17 27 25 211 13 14 15 chain 562741 chr6 170805979 + 51874783 51880777 L1HS 6032 + 34 6030 133 3801 0 2 2193 chain 540051 chr6 170805979 + 51895656 51901675 L1PA3long 6157 + 1 6152 1339 151 0 1 422 0 4 197 0 128 458 0 1 1899 2 1 1378 2 0 30 1 0 639 0 4 339 2 0 499 chain 32060 chr6 170805979 + 51938240 51938681 LTR7 482 + 0 476 40298 100 21 15 53 0 1 73 8 38 34 0 10 152 chain 290326 chr6 170805979 + 51938716 51942752 HERVH-int 3825 + 26 3825 7121 83 0 9 156 13 16 43 2 1 31 14 15 93 0 4 12 4 1 40 1 0 15 2 1 24 1 0 7 1 0 23 53 144 35 1 0 64 0 3 56 0 1 326 15 0 72 0 1 128 10 0 40 1 0 309 0 1 304 12 17 353 2 0 164 328 0 405 7 12 51 0 3 319 13 14 261 0 1 30 1 0 111 chain 30719 chr6 170805979 + 51943982 51944410 LTR7 482 + 0 466 41374 100 21 15 34 0 1 18 0 1 73 5 36 36 0 10 37 5 6 99 chain 12244 chr6 170805979 + 51974568 51974845 L1PB1 5432 + 5169 5422 66388 51 2 1 16 1 0 37 7 6 16 1 0 6 16 6 16 30 23 23 1 0 14 8 7 13 1 0 18 chain 130568 chr6 170805979 + 51981373 51982817 SVA_E 1901 + 0 1893 13973 96 1 31 26 2 0 126 1 0 44 4 1 330 0 1 157 0 424 657 chain 5398 chr6 170805979 + 52061624 52061704 MADE1 96 + 0 96 83708 39 10 26 31 chain 104871 chr6 170805979 + 52113121 52114295 L1PA4 6152 + 4975 6151 17704 326 0 2 848 chain 55182 chr6 170805979 + 52160949 52161647 THE1D-int 1627 + 923 1616 27816 508 5 0 185 chain 81710 chr6 170805979 + 52167522 52168707 L1PA16 3655 + 2411 3590 21296 73 0 1 184 9 8 35 6 7 62 1 0 27 8 10 12 0 1 36 15 19 12 1 0 21 4 3 150 6 0 16 1 2 111 1 0 78 13 11 289 3 0 11 chain 12269 chr6 170805979 + 52256060 52256219 MER1B 344 + 103 263 66333 27 3 4 129 chain 10782 chr6 170805979 + 52368787 52368966 THE1C 375 + 0 184 68895 13 2 0 7 1 0 26 0 7 17 20 21 93 chain 11546 chr6 170805979 + 52385423 52385600 L1PA16 3655 + 2614 2788 67671 61 1 0 8 5 6 44 1 0 48 2 0 7 chain 81613 chr6 170805979 + 52477537 52478438 L1PA2 6032 + 5130 6032 21311 564 1 2 336 chain 4874 chr6 170805979 + 52584004 52584142 MER97c 529 + 53 186 86296 10 1 0 12 24 27 10 1 0 6 14 11 51 3 0 6 chain 87426 chr6 170805979 + 52600784 52601890 L1PA8 5853 + 4746 5853 20150 146 0 3 45 0 8 61 2 0 387 1 0 168 1 0 46 2 0 72 20 18 40 2 1 13 7 6 93 chain 18668 chr6 170805979 + 52614154 52614360 L1PA3long 6157 + 5949 6155 57930 206 chain 19315 chr6 170805979 + 52645206 52645507 THE1B 368 + 0 328 57224 81 1 18 4 0 1 65 1 0 19 45 55 85 chain 42971 chr6 170805979 + 52704945 52705486 MER41A 554 + 0 554 32791 384 6 13 69 0 5 23 0 1 59 chain 43203 chr6 170805979 + 52709746 52710282 MER41A 554 + 2 554 32644 399 0 1 28 0 1 88 1 15 20 chain 4727 chr6 170805979 + 52720236 52720321 MLT1A0 366 + 226 316 87095 17 18 23 50 chain 29356 chr6 170805979 + 52730662 52731163 HUERS-P3b-int 2065 + 1390 1857 42800 81 1 0 34 1 0 10 29 2 84 2 0 4 0 1 8 2 0 5 0 1 19 1 0 73 1 0 16 3 1 31 12 14 15 10 12 19 4 1 36 chain 74459 chr6 170805979 + 52761829 52762798 LTR5_Hs 974 + 0 974 22974 212 0 1 246 0 4 163 10 9 25 0 1 13 3 5 22 5 1 14 0 2 58 7 7 191 chain 3709 chr6 170805979 + 52787023 52787105 LTR12C 1709 + 881 1000 93550 14 22 59 46 chain 3672 chr6 170805979 + 52789642 52790006 MLT1C 463 + 64 427 93798 37 298 297 29 chain 131921 chr6 170805979 + 52824733 52826369 SVA_A 1864 + 6 1864 13836 7 1 0 10 0 4 19 0 10 455 3 0 105 2 0 110 3 0 29 6 8 78 41 1 43 1 0 139 2 258 582 chain 527345 chr6 170805979 + 52860828 52867270 L1PA3long 6157 + 0 6157 1942 374 2 0 188 12 13 135 0 7 403 0 5 153 5 6 144 1 2 401 309 0 279 0 3 93 0 2 111 0 1 1497 0 4 471 0 2 1718 1 0 145 chain 89608 chr6 170805979 + 52883248 52884264 LTR5A 1029 + 0 1029 19744 104 0 1 34 1 14 665 1 0 211 chain 111616 chr6 170805979 + 52906423 52907660 L1PA3long 6157 + 4605 5834 16860 59 0 1 714 15 6 449 chain 74848 chr6 170805979 + 52922679 52923640 LTR5_Hs 974 + 0 974 22885 115 5 13 161 0 1 366 1 0 163 8 15 19 20 18 103 chain 9362 chr6 170805979 + 52923640 52923761 HERVE-int 4064 + 3081 3202 71782 121 chain 79688 chr6 170805979 + 52943907 52944953 MER11C 1089 + 1 1063 21698 245 0 9 27 0 1 34 0 4 64 1 0 147 47 46 106 7 11 4 1 0 38 0 1 127 0 1 54 1 0 143 chain 24241 chr6 170805979 + 52949867 52950198 Tigger2a 444 + 0 347 50436 104 3 6 114 4 7 18 0 7 25 0 1 12 0 2 51 chain 41667 chr6 170805979 + 52963578 52964137 MER9a3 513 + 14 513 33581 209 75 15 275 chain 33234 chr6 170805979 + 52973760 52974200 MLT2A1 477 + 0 477 39315 150 0 1 17 5 2 208 12 42 40 0 9 8 chain 40876 chr6 170805979 + 52988869 52989424 MER41A 554 + 0 554 34044 74 3 0 180 2 1 88 1 0 53 9 13 71 1 2 4 1 0 68 chain 23252 chr6 170805979 + 52995619 52995864 7SK 245 + 0 245 52000 245 chain 29253 chr6 170805979 + 53077192 53077500 AluYa5 310 + 0 309 42959 140 0 1 168 chain 7269 chr6 170805979 + 53090400 53090486 HY3 101 + 0 85 76768 21 1 0 64 chain 58417 chr6 170805979 + 53163328 53165440 L1PA17 2846 + 1638 2683 26834 92 1 0 49 0 1 27 643 26 22 4 6 24 8 7 100 1 7 100 7 6 268 0 8 16 7 9 49 60 57 21 1 0 42 536 74 34 chain 6996 chr6 170805979 + 53180827 53180917 MER58B 340 + 122 212 77618 90 chain 13018 chr6 170805979 + 53219260 53219420 U1 164 + 0 160 65091 160 chain 6162 chr6 170805979 + 53266901 53266972 MER58A 224 + 53 124 80478 71 chain 3494 chr6 170805979 + 53368589 53368628 THE1D-int 1627 + 796 835 95287 39 chain 520068 chr6 170805979 + 53382735 53389188 L1PA6 6164 + 4 6162 2271 383 17 16 61 2 1 44 2 1 676 0 3 140 1 3 239 0 2 249 0 1 59 0 1 32 0 1 262 1 0 35 0 2 118 5 6 638 316 0 171 0 5 1129 0 1 82 0 4 114 3 0 338 1 6 5 0 1 482 1 0 847 chain 307236 chr6 170805979 + 53487492 53490916 L1PA4 6152 + 2724 6151 6676 485 1 0 926 0 1 4 2 1 215 0 4 941 1 0 264 0 1 585 chain 16430 chr6 170805979 + 53494420 53494771 THE1B 368 + 7 368 60471 101 121 132 66 7 6 56 chain 3458 chr6 170805979 + 53496705 53496758 MER5A1 166 + 32 92 95559 29 1 0 6 2 10 15 chain 6698 chr6 170805979 + 53550747 53550831 MER4D1 891 + 1 85 78649 84 chain 127341 chr6 170805979 + 53552067 53553648 THE1A-int 1579 + 0 1579 14383 182 23 11 222 0 8 460 0 3 41 12 12 43 6 5 592 chain 26472 chr6 170805979 + 53553656 53554002 THE1A 353 + 8 353 47023 96 7 6 243 chain 31405 chr6 170805979 + 53555819 53556268 MER4A1 472 + 0 472 40809 127 4 5 92 40 62 186 chain 207252 chr6 170805979 + 53560292 53562966 MER4-int 2692 + 1 2691 9451 10 1 0 24 2 1 63 1 0 19 6 2 8 4 0 6 0 1 234 4 2 56 0 2 240 0 3 53 5 1 37 0 2 154 0 1 160 0 3 168 1 0 253 0 4 356 0 1 10 0 1 102 4 6 14 1 0 282 2 0 4 6 0 47 0 1 152 0 3 131 0 19 54 chain 29416 chr6 170805979 + 53572386 53572897 L1PB1 5432 + 4918 5422 42713 42 7 17 74 1 0 47 0 16 24 1 0 6 1 0 13 7 3 8 2 0 51 3 2 15 1 0 43 2 1 16 19 6 24 2 0 6 1 0 14 8 6 18 1 0 22 2 1 10 2 1 18 chain 10149 chr6 170805979 + 53583307 53583472 MSTA 426 + 252 426 70104 18 7 8 4 1 0 18 9 17 50 0 1 58 chain 3499 chr6 170805979 + 53634486 53634528 MADE1 96 + 2 44 95253 42 chain 24575 chr6 170805979 + 53644449 53644801 THE1C 375 + 0 370 49888 62 11 18 29 1 15 172 2 0 31 6 0 6 0 6 11 1 0 20 chain 84593 chr6 170805979 + 53675827 53676855 L1PA7 6471 + 5422 6468 20700 58 1 4 118 0 1 15 1 0 434 1 5 254 4 6 117 0 9 25 chain 485006 chr6 170805979 + 53774041 53779535 L1PA4 6152 + 13 5518 3534 2112 0 1 423 2 1 706 0 3 631 0 2 689 0 15 161 9 0 761 chain 23703 chr6 170805979 + 53882073 53882352 AluSg 306 + 7 285 51274 111 1 0 167 chain 3790 chr6 170805979 + 53889940 53889995 LTR86B1 441 + 109 168 92919 6 0 6 28 2 0 19 chain 24486 chr6 170805979 + 53990837 53991189 THE1D 372 + 0 372 50053 26 1 0 48 9 8 86 17 24 106 1 15 25 0 1 33 chain 3530 chr6 170805979 + 53999011 53999056 Charlie8 480 + 151 196 95022 45 chain 4705 chr6 170805979 + 54093866 54093922 MER58A 224 + 159 215 87236 56 chain 14464 chr6 170805979 + 54176573 54176768 L1PA10 4194 + 3958 4150 62948 124 5 6 5 1 0 23 3 0 34 chain 18684 chr6 170805979 + 54279354 54279594 AluSc8 310 + 6 265 57917 16 0 1 102 1 4 17 0 12 55 0 3 49 chain 82864 chr6 170805979 + 54280256 54281200 L1PA5 6144 + 5194 6139 21053 568 0 1 376 chain 115877 chr6 170805979 + 54297852 54299171 L1PA4 6152 + 3893 5212 16262 43 1 0 4 12 13 1259 chain 516660 chr6 170805979 + 54327154 54333627 L1PA7 6471 + 0 6470 2439 412 1 0 248 19 7 323 2 1 226 2 1 49 0 1 66 0 1 21 1 0 275 1 0 737 0 1 44 0 1 70 2 1 146 0 2 192 1 3 12 23 23 250 0 16 646 5 3 57 4 5 537 2 1 241 2 3 87 1 0 127 8 0 141 2 4 7 2 0 631 1 2 228 11 10 277 0 1 333 chain 2256 chr6 170805979 + 54383764 54383788 L1PA7 6471 + 5869 5893 104986 24 chain 48547 chr6 170805979 + 54383788 54384358 L1PA7 6471 + 5895 6465 30105 570 chain 161335 chr6 170805979 + 54458508 54460369 L1PA5 6144 + 4228 6091 11661 983 0 1 4 1 0 43 7 7 31 0 4 218 1 0 357 12 11 204 chain 28588 chr6 170805979 + 54467725 54468079 THE1A 353 + 0 353 43977 110 1 0 243 chain 54527 chr6 170805979 + 54497070 54497749 L1PA6 6164 + 5481 6161 28038 207 0 1 129 8 10 326 2 0 7 chain 102615 chr6 170805979 + 54506571 54507715 L1PA3long 6157 + 4302 5449 17992 339 1 0 667 1 5 136 chain 155734 chr6 170805979 + 54530000 54531824 L1PA6 6164 + 2526 4363 12022 193 1 7 404 1 0 57 1 0 53 0 1 24 0 5 19 0 1 69 0 2 1002 chain 29615 chr6 170805979 + 54555302 54555633 L1PA3long 6157 + 5818 6149 42465 331 chain 223882 chr6 170805979 + 54555702 54558565 L1PA8 5853 + 2959 5847 8934 162 0 2 88 13 3 264 0 1 138 1 0 4 1 2 148 1 0 44 0 21 72 0 4 294 4 10 124 0 1 28 5 8 116 1 0 69 5 3 87 0 2 133 0 2 195 0 4 18 0 2 100 2 0 452 6 5 44 2 0 71 1 0 13 13 12 35 2 1 19 1 0 87 chain 21512 chr6 170805979 + 54563689 54564046 L1PA13 3608 + 3128 3477 54493 32 1 0 49 0 1 50 18 15 60 1 0 21 0 4 32 7 4 42 14 10 19 1 0 10 chain 42120 chr6 170805979 + 54566050 54566511 L1PA3long 6157 + 5694 6155 33286 461 chain 6248 chr6 170805979 + 54660835 54660907 L1PA8 5853 + 5484 5558 80179 36 0 2 36 chain 9880 chr6 170805979 + 54660914 54661044 L1PA8 5853 + 5564 5691 70659 44 2 0 72 2 1 10 chain 11319 chr6 170805979 + 54661048 54661212 L1PA8 5853 + 5691 5853 68055 43 9 8 21 1 0 90 chain 158179 chr6 170805979 + 54672223 54674012 L1P1 4361 + 2523 4310 11862 1189 5 4 100 0 1 334 1 0 154 1 0 5 chain 5867 chr6 170805979 + 54691351 54691624 MER33 330 + 23 325 81611 55 170 191 25 3 11 20 chain 115012 chr6 170805979 + 54728003 54729327 L1PA5 6144 + 4823 6143 16391 448 2 1 22 1 0 244 1 0 444 21 20 141 chain 3511 chr6 170805979 + 54760255 54760376 MER96B 391 - 33 154 95170 16 35 39 10 1 0 5 1 0 21 8 6 24 chain 6974 chr6 170805979 + 54787468 54787638 L1MA8 2339 + 1933 2116 77700 25 4 0 51 1 0 4 35 36 26 8 25 16 chain 175230 chr6 170805979 + 54788503 54790473 L1PA5 6144 + 4166 6140 10818 155 0 2 28 0 2 1787 chain 127920 chr6 170805979 + 54796458 54798035 THE1A-int 1579 + 0 1579 14295 579 0 1 300 0 2 211 2 1 383 6 7 15 1 0 80 chain 34502 chr6 170805979 + 54839313 54839678 L1HS 6032 + 4517 4882 38350 365 chain 24817 chr6 170805979 + 54885685 54885962 L1PA4 6152 + 5859 6136 49562 277 chain 541954 chr6 170805979 + 54961429 54967437 L1PA3long 6157 + 5 6147 1211 147 0 1 211 0 1 403 8 136 5198 0 4 41 chain 130363 chr6 170805979 + 54979054 54980604 LTR12C 1709 + 0 1709 13993 699 0 159 179 1 3 72 1 0 5 3 1 76 3 0 30 0 4 53 0 1 214 1 0 213 chain 29088 chr6 170805979 + 54999580 54999891 AluYa5 310 + 0 310 43209 97 1 0 213 chain 3011 chr6 170805979 + 55086701 55086733 MLT1B 390 + 65 97 99730 32 chain 453608 chr6 170805979 + 55089864 55095173 L1PA5 6144 + 784 6135 4295 27 0 17 209 0 1 131 9 0 119 0 1 251 0 22 884 3 4 175 9 6 430 0 4 128 0 1 487 0 1 476 0 1 463 1 0 366 0 5 301 1 0 173 0 2 666 chain 44367 chr6 170805979 + 55122619 55123121 L1PA5 6144 + 5636 6138 31906 502 chain 521178 chr6 170805979 + 55158010 55164781 L1PA7 6471 + 0 6469 2217 65 1 2 172 0 2 164 1 2 282 9 10 214 0 3 5 3 0 346 41 10 218 0 3 526 5 6 183 0 1 259 0 1 82 10 11 69 1 2 186 1 3 641 0 1 29 1 2 22 2 1 475 7 5 21 2 0 682 0 20 68 0 1 155 308 0 395 1 0 276 0 3 832 0 2 11 chain 19517 chr6 170805979 + 55210934 55211208 Tigger3a 397 + 38 364 56999 37 16 67 153 0 1 68 chain 6327 chr6 170805979 + 55229342 55229565 L1MB1 2102 + 1693 1927 79904 44 88 100 19 34 33 38 chain 14951 chr6 170805979 + 55265879 55266078 MER107 203 + 0 203 62321 77 0 1 83 5 8 34 chain 51812 chr6 170805979 + 55294696 55295320 L1PA7 6471 + 5688 6305 28935 161 1 0 258 16 11 16 1 0 171 chain 13656 chr6 170805979 + 55295330 55295484 L1PA7 6471 + 6316 6470 64074 154 chain 13811 chr6 170805979 + 55297501 55297653 L1PA5 6144 + 5986 6138 63865 152 chain 204719 chr6 170805979 + 55311910 55314202 L1PA3long 6157 + 3861 6157 9545 1169 0 1 965 0 3 158 chain 527119 chr6 170805979 + 55340547 55346692 L1PA5 6144 + 3 6134 1952 117 19 19 1251 4 0 10 0 4 29 1 0 576 1 0 13 2 1 1282 16 3 34 0 5 162 2 0 316 2 0 813 2 0 659 0 4 576 9 8 249 chain 8438 chr6 170805979 + 55355231 55355334 L1PA8A 6298 + 6186 6289 73825 103 chain 20101 chr6 170805979 + 55384044 55384278 L1PA7 6471 + 6232 6467 56254 225 0 1 9 chain 6358 chr6 170805979 + 55481366 55481524 L1MA3 4352 + 4176 4328 79814 33 25 21 30 2 0 5 17 19 4 1 0 26 1 0 14 chain 47510 chr6 170805979 + 55510285 55510801 L1PA3long 6157 + 5641 6157 30477 516 chain 18462 chr6 170805979 + 55519999 55520206 L1PA7 6471 + 6211 6418 58145 207 chain 3177 chr6 170805979 + 55520206 55520246 L1PA7 6471 + 6419 6459 98121 40 chain 284590 chr6 170805979 + 55587349 55590612 L1PA4 6152 + 1918 5201 7297 94 0 14 1150 2 1 394 0 1 206 0 1 111 0 2 151 0 1 824 11 13 320 chain 30805 chr6 170805979 + 55598924 55599273 L1PA7 6471 + 6121 6470 41304 349 chain 109536 chr6 170805979 + 55610994 55612529 L1PA10 4194 + 2167 4161 17119 354 21 469 184 0 1 66 18 19 37 21 28 95 0 1 243 0 7 30 1 0 162 0 2 217 3 0 32 12 9 27 1 0 11 chain 267152 chr6 170805979 + 55624103 55627500 HERVL-int 5654 + 2238 5654 7782 17 14 15 15 15 15 1055 0 3 493 1 0 90 0 10 182 0 1 233 0 4 53 6 7 78 4 7 337 0 8 175 3 0 5 0 6 178 25 10 251 7 8 160 chain 29219 chr6 170805979 + 55627500 55627880 MLT2A1 477 + 0 385 43021 140 1 2 20 7 11 212 chain 64673 chr6 170805979 + 55648288 55649007 L1P1 4361 + 3054 3773 25271 719 chain 537541 chr6 170805979 + 55684659 55690683 L1PA3long 6157 + 0 6156 1482 153 0 1 528 0 1 93 0 128 4422 0 1 47 0 1 781 chain 13343 chr6 170805979 + 55715680 55715863 MER30 238 + 39 238 64561 55 0 2 8 3 17 117 chain 25597 chr6 170805979 + 55723946 55724259 AluY 311 + 6 309 48320 120 10 0 183 chain 538722 chr6 170805979 + 55735539 55741684 L1PA4 6152 + 3 6151 1412 1233 0 1 197 1 0 49 0 1 822 2 7 4 1 0 462 0 4 394 1 0 109 1 0 1343 4 0 691 0 1 497 2 1 332 chain 3242 chr6 170805979 + 55750239 55750398 MER58A 224 + 51 221 97563 21 85 95 21 10 11 22 chain 5292 chr6 170805979 + 55853629 55853755 MER97d 503 + 24 142 84236 20 38 29 14 1 0 30 0 2 23 chain 31864 chr6 170805979 + 55858689 55859131 L1PA8 5853 + 5399 5853 40446 165 0 16 28 2 0 70 2 1 11 6 5 33 0 7 5 2 1 19 3 2 67 5 0 24 chain 5523 chr6 170805979 + 55863637 55863751 Tigger3b 1229 + 9 121 83142 14 34 32 66 chain 9328 chr6 170805979 + 55950809 55951056 LTR12C 1709 + 843 1203 71857 46 5 124 55 4 51 19 62 21 13 16 4 27 chain 5279 chr6 170805979 + 55951107 55951257 LTR12C 1709 + 650 718 84290 27 82 0 41 chain 69247 chr6 170805979 + 56114538 56115307 L1PA2 6032 + 5234 6027 24168 477 1 23 140 0 7 140 5 0 6 chain 357046 chr6 170805979 + 56188448 56193216 L1PA7 6471 + 761 6365 5833 73 0 1 21 0 1 135 24 34 68 6 0 111 6 4 41 1 20 1114 0 1029 172 0 2 248 0 1 262 0 1 172 25 9 39 0 1 277 0 1 75 292 0 82 0 5 126 5 46 291 0 1 284 0 20 33 8 0 62 0 1 79 0 1 248 0 20 351 0 5 37 chain 502159 chr6 170805979 + 56203672 56210265 L1PA7 6471 + 3 6469 3053 165 13 13 20 1 0 39 5 5 152 1 2 6 16 0 177 0 11 184 0 1 4 7 0 23 7 6 160 0 1 44 10 11 141 15 11 236 0 3 674 0 2 538 6 0 368 58 10 527 7 11 287 0 1 83 0 1 286 1 3 94 1 0 174 2 1 21 23 31 76 0 2 156 1 2 49 0 1 161 1 0 354 3 4 58 105 0 231 1 0 79 0 1 150 0 2 115 0 1 227 0 19 46 16 13 6 0 4 151 2 1 4 0 1 25 chain 7012 chr6 170805979 + 56240382 56240478 MLT1A1 405 + 292 389 77563 13 5 7 20 1 0 57 chain 3589 chr6 170805979 + 56322843 56322882 tRNA-Met-i 72 + 33 72 94524 39 chain 6780 chr6 170805979 + 56352113 56352204 MER96B 391 + 90 180 78384 16 1 0 74 chain 23279 chr6 170805979 + 56378676 56379375 L1M1 2793 + 510 1094 51959 10 3 0 14 11 9 8 2 0 11 3 0 7 1 0 10 4 3 8 3 0 9 36 20 16 81 19 7 0 6 14 0 3 18 40 27 10 4 0 5 2 0 15 10 7 6 2 0 17 18 17 24 3 1 8 1 0 54 5 3 6 1 0 43 1 5 17 4 0 36 9 8 5 0 1 77 chain 48808 chr6 170805979 + 56399558 56400140 LTR22 571 + 0 571 30012 82 1 0 173 11 0 284 0 1 31 chain 56217 chr6 170805979 + 56421698 56422514 L1PB2 3958 + 3040 3838 27507 11 0 2 147 11 7 101 2 0 53 1 0 10 4 0 64 6 3 13 4 0 94 4 3 70 1 0 63 5 4 56 0 2 32 1 0 63 chain 131516 chr6 170805979 + 56586585 56588097 L1PA4 6152 + 667 2172 13868 31 7 0 1474 chain 9980 chr6 170805979 + 56675904 56676047 L1MA8 2339 + 1498 1634 70463 111 7 0 25 chain 13355 chr6 170805979 + 56685148 56685494 L1PA17 2846 + 2369 2689 64534 60 14 11 59 4 0 18 135 117 15 1 0 40 chain 34176 chr6 170805979 + 56726994 56727428 MER4A1 472 + 0 457 38579 109 0 1 57 0 1 58 5 26 205 chain 43686 chr6 170805979 + 56739494 56740283 MER41A 554 + 0 554 32329 315 1 2 4 1 0 109 243 8 116 chain 7110 chr6 170805979 + 56799933 56800029 Tigger1 2417 + 2226 2320 77226 26 2 0 68 chain 59010 chr6 170805979 + 56812754 56813394 L1PA3long 6157 + 5517 6157 26663 640 chain 135227 chr6 170805979 + 56823985 56825517 SVA_D 2077 + 11 2077 13517 376 0 3 178 0 40 270 0 45 13 0 351 15 4 65 8 0 38 649 4 0 15 chain 28535 chr6 170805979 + 56870109 56870432 LTR17 781 + 3 326 44060 323 chain 28460 chr6 170805979 + 56896196 56896548 THE1A 353 + 0 353 44181 108 1 0 111 1 0 14 10 13 107 chain 45246 chr6 170805979 + 56908574 56909128 MER41A 554 + 0 554 31454 554 chain 64903 chr6 170805979 + 56931219 56932044 THE1A-int 1579 + 768 1574 25214 541 2 1 158 0 7 68 25 0 31 chain 5504 chr6 170805979 + 56945740 56945805 U6 107 + 11 76 83217 65 chain 52335 chr6 170805979 + 57000000 57000585 SVA_A 1864 + 1259 1862 28781 254 0 3 202 0 15 129 chain 7680 chr6 170805979 + 57001057 57001155 L1PA15-16 3068 + 808 906 75681 98 chain 5924 chr6 170805979 + 57003556 57003788 L1PA15-16 3068 + 2626 2821 81381 25 23 19 17 4 2 18 82 56 26 2 0 13 2 0 13 1 0 6 chain 12266 chr6 170805979 + 57008589 57008768 L1MA5A 2387 + 1570 1748 66342 34 2 4 28 2 0 103 1 0 9 chain 34022 chr6 170805979 + 57028879 57029446 LTR8 732 + 0 576 38691 97 0 2 37 5 9 12 1 0 36 5 8 112 1 0 73 18 17 27 54 57 89 chain 145689 chr6 170805979 + 57042898 57045076 L1PB1 5432 + 3300 5416 12637 225 4 5 186 33 20 119 0 4 209 6 7 68 0 1 243 0 3 69 4 8 162 3 0 79 1 0 15 46 46 193 21 17 119 48 16 24 28 23 7 2 0 49 3 2 18 1 0 45 1 0 20 1 0 11 45 37 20 1 0 22 1 0 12 1 0 8 1 0 4 chain 243927 chr6 170805979 + 57071115 57074287 HERVK22-int 3844 + 1 3844 8380 236 1 0 19 0 1 303 0 1 819 1 0 97 0 4 161 16 17 366 16 20 21 0 2 83 25 0 54 0 1 271 0 2 168 23 22 91 8 36 6 1 0 207 3 656 48 1 6 25 33 32 56 1 0 12 chain 3335 chr6 170805979 + 57099986 57100029 MIRc 230 + 132 181 96724 6 0 6 37 chain 3830 chr6 170805979 + 57175292 57175336 MER21A 919 + 26 70 92652 44 chain 80881 chr6 170805979 + 57237927 57238835 L1P1 4361 + 2345 3253 21459 908 chain 51204 chr6 170805979 + 57254445 57255103 PABL_A 660 + 0 660 29165 201 7 6 132 0 1 236 11 13 71 chain 234380 chr6 170805979 + 57284830 57287774 L1PA8 5853 + 2894 5853 8626 13 2 3 49 0 5 248 5 2 6 0 1 49 1 2 104 0 2 376 0 13 105 0 1 17 0 2 1115 0 2 27 4 1 386 1 0 141 15 14 30 2 0 73 1 0 7 1 0 6 0 1 48 1 0 9 9 8 93 chain 501488 chr6 170805979 + 57287804 57293976 L1PA6 6164 + 0 6162 3078 190 6 7 225 6 5 22 19 0 118 26 25 131 1 2 14 10 9 48 1 18 1392 7 11 107 6 1 47 48 1 420 0 4 214 0 1 210 0 1 15 0 1 240 5 8 206 0 1 464 0 1 653 0 8 498 0 4 708 0 20 94 1 0 10 2 0 8 chain 32473 chr6 170805979 + 57309888 57310240 L1PA2 6032 + 4963 5315 39965 352 chain 28033 chr6 170805979 + 57322356 57322726 THE1C 375 + 2 372 44809 123 11 14 180 7 5 25 1 0 23 chain 3693 chr6 170805979 + 57323571 57323613 L1PA8 5853 + 5637 5679 93655 42 chain 3922 chr6 170805979 + 57323614 57323676 L1PA8 5853 + 5679 5740 91969 14 2 0 5 1 2 40 chain 8669 chr6 170805979 + 57323678 57323781 L1PA8 5853 + 5741 5853 73292 22 0 9 81 chain 540448 chr6 170805979 + 57334868 57340862 L1PA3long 6157 + 19 6153 1312 133 0 1 623 0 128 90 0 3 2080 4 7 795 0 4 1413 5 6 851 chain 7347 chr6 170805979 + 57486263 57486356 MER85 139 + 0 96 76528 60 0 3 33 chain 37241 chr6 170805979 + 57556014 57556899 L1PREC2 3366 + 2445 3214 36592 15 4 1 255 0 1 89 1 0 44 1 0 3 3 0 14 27 21 12 2 0 5 5 2 13 15 17 15 4 0 11 22 8 32 9 7 38 158 93 14 56 41 18 chain 452406 chr6 170805979 + 57636780 57642372 L1PA7 6471 + 821 6459 4324 134 0 4 372 14 15 255 0 3 64 14 15 147 3 6 40 0 2 681 9 10 63 14 0 67 7 11 179 0 4 203 0 4 149 0 1 109 0 1 312 0 18 123 0 4 12 4 0 218 2 1 280 2 1 305 0 1 37 0 8 339 0 1 6 11 0 573 0 4 14 1 4 340 0 1 251 0 1 93 13 13 22 5 8 61 0 4 44 chain 48413 chr6 170805979 + 57653698 57654258 L1PA6 6164 + 5597 6157 30142 560 chain 26436 chr6 170805979 + 57662843 57663184 MLT2A1 477 + 0 357 47073 44 5 17 81 0 1 26 1 5 149 1 0 34 chain 167783 chr6 170805979 + 57664142 57666184 HERVL-int 5654 + 3592 5654 11227 1345 0 8 419 0 3 23 0 1 32 0 6 135 5 6 28 0 1 55 chain 28341 chr6 170805979 + 57666184 57666538 MLT2A1 477 + 0 357 44352 142 0 1 24 2 6 47 1 0 104 1 0 33 chain 489182 chr6 170805979 + 57679364 57685635 L1PA7 6471 + 0 6468 3440 196 66 65 68 24 194 172 34 44 496 0 4 11 3 0 41 5 6 117 1 4 137 1 0 204 1 0 35 4 5 343 0 1 47 0 1 502 0 1 7 5 4 798 1 0 5 5 6 55 0 4 25 11 4 62 0 2 4 0 1 165 1 0 138 0 1 550 0 4 50 0 3 226 0 2 218 0 1 236 6 0 6 1 7 149 13 0 69 0 1 36 0 1 86 0 4 43 7 14 775 0 2 10 chain 529798 chr6 170805979 + 57700427 57706539 L1PA4 6152 + 0 6152 1837 140 13 27 873 0 1 383 0 1 927 1 0 2072 0 3 605 8 3 357 0 10 29 0 1 208 2 0 105 0 13 383 0 5 6 chain 48005 chr6 170805979 + 57726964 57727647 LTR76 689 + 7 682 30295 42 1 0 78 1 0 234 0 1 26 2 0 9 1 0 78 0 6 26 12 6 19 8 9 99 2 0 7 5 4 16 2 0 15 chain 3607 chr6 170805979 + 57800210 57800249 tRNA-Ile-ATT 40 + 0 39 94368 39 chain 4249 chr6 170805979 + 57808648 57808696 tRNA-Met 55 + 4 52 89833 48 chain 3607 chr6 170805979 + 57822972 57823011 tRNA-Ile-ATT 40 + 0 39 94367 39 chain 25419 chr6 170805979 + 57875830 57876191 THE1C 375 + 0 363 48602 108 1 0 16 0 20 10 17 1 195 1 0 13 chain 31287 chr6 170805979 + 57877081 57877473 THE1D-int 1627 + 0 392 40905 378 0 1 4 1 0 9 chain 5983 chr6 170805979 + 57879221 57879294 L1MA7 2200 + 1871 1944 81151 73 chain 11398 chr6 170805979 + 57881413 57881632 L1MA5A 2387 + 2107 2295 67916 48 2 0 26 2 0 34 3 0 12 31 4 36 4 7 21 chain 129852 chr6 170805979 + 57885482 57887050 L1PA6 6164 + 4616 6162 14061 97 23 1 865 0 1 252 1 0 98 0 2 222 2 0 8 chain 27191 chr6 170805979 + 57920078 57920381 L1PA2 6032 + 5729 6032 45979 303 chain 105232 chr6 170805979 + 57934735 57936270 THE1B-int 1605 + 13 1599 17656 246 0 1 14 0 6 19 70 9 83 5 69 76 9 16 109 15 16 17 8 14 119 11 12 117 6 1 193 0 14 78 0 6 56 0 5 90 6 7 113 0 5 75 chain 10792 chr6 170805979 + 57936277 57936467 THE1B 368 + 2 199 68876 47 0 6 13 17 18 19 11 12 52 1 0 30 chain 4435 chr6 170805979 + 57942141 57942215 MER3 215 + 8 83 88696 14 9 10 51 chain 56490 chr6 170805979 + 57974585 57975322 LTR17 781 + 0 755 27430 56 1 0 105 1 0 18 1 0 148 1 0 377 3 25 26 chain 20944 chr6 170805979 + 58097670 58098423 L1P4a 3072 + 36 459 55202 11 1 0 19 3 1 53 1 0 89 48 52 15 1 0 27 379 51 99 1 0 6 chain 56590 chr6 170805979 + 58098975 58099599 L1PA3long 6157 + 5533 6157 27393 624 chain 10471 chr6 170805979 + 58123380 58123575 Tigger1 2417 + 2202 2383 69463 11 14 0 40 2 0 81 23 26 4 1 0 19 chain 110839 chr6 170805979 + 58132287 58133653 L1PA8 5853 + 2133 3513 16961 335 0 1 12 0 4 236 1 0 120 0 5 46 4 0 361 0 9 251 chain 25575 chr6 170805979 + 58166461 58166746 L1PA5 6144 + 5857 6142 48357 285 chain 114197 chr6 170805979 + 58190027 58191451 SVA_B 1603 + 7 1603 16521 15 20 5 12 1 25 158 1 0 556 1 2 5 1 0 131 8 167 91 0 2 29 1 6 386 2 0 6 chain 165098 chr6 170805979 + 58211281 58213156 L1PA4 6152 + 3461 5340 11404 403 4 7 741 0 1 727 chain 124087 chr6 170805979 + 58257131 58258594 SVA_C 1631 + 24 1630 14831 11 1 18 593 8 5 33 0 40 27 5 5 87 0 88 73 0 1 625 chain 304173 chr6 170805979 + 58275927 58280225 L1PA4 6152 + 2637 6136 6738 1046 2 0 952 3 1 694 0 12 112 806 0 540 13 12 130 chain 140994 chr6 170805979 + 58313273 58314853 L1PA3long 6157 + 4577 6156 13026 638 1 0 941 chain 29272 chr6 170805979 + 58314873 58315258 L1PA6 6164 + 5782 6162 42933 208 1 3 9 10 9 144 6 0 7 chain 507987 chr6 170805979 + 58316176 58322539 L1PA7 6471 + 0 6447 2849 65 0 1 922 16 15 23 12 11 125 3 46 28 0 4 360 0 1 208 0 1 68 0 2 35 0 1 364 0 13 8 5 8 332 1 0 38 0 1 10 0 1 92 0 1 233 0 3 74 0 2 47 0 1 175 1 0 183 0 1 275 0 1 890 1 9 553 4 7 381 1 2 189 3 0 13 0 2 364 2 1 107 0 1 4 9 6 139 chain 16625 chr6 170805979 + 58346995 58347208 MSTA-int 1630 + 44 258 60242 106 11 12 96 chain 58101 chr6 170805979 + 58364648 58365326 L1PA5 6144 + 5460 6142 26933 539 0 4 139 chain 424282 chr6 170805979 + 58393807 58398840 L1PA4 6152 + 9 5047 4824 476 0 10 81 1 0 132 12 5 1880 0 1 4 14 13 49 2 0 524 0 1 506 0 2 247 0 1 722 18 19 365 chain 11332 chr6 170805979 + 58401241 58401556 HERVK11-int 2540 + 678 939 68030 59 5 0 14 128 83 44 3 0 12 2 1 48 chain 60351 chr6 170805979 + 58445573 58446260 L1PA3long 6157 + 4610 5297 26274 687 chain 80474 chr6 170805979 + 60241763 60242687 L1PA3long 6157 + 5219 6157 21533 60 0 14 864 chain 3739 chr6 170805979 + 60379225 60379268 MER85 139 + 0 43 93341 43 chain 36240 chr6 170805979 + 60448572 60449210 L1PREC2 3366 + 2445 3048 37244 17 3 0 254 0 1 89 1 0 44 1 0 3 3 0 14 27 21 13 14 9 10 15 17 14 37 20 32 9 7 38 chain 64378 chr6 170805979 + 60510412 60511108 L1PA2 6032 + 5338 6032 25333 681 2 0 13 chain 4600 chr6 170805979 + 60513010 60513087 MER1B 344 + 42 130 87797 15 0 10 14 11 12 37 chain 18873 chr6 170805979 + 60513101 60513395 MER1B 344 + 30 335 57676 27 0 10 14 11 12 124 7 0 44 18 25 49 chain 460878 chr6 170805979 + 60535870 60541502 L1PA7 6471 + 821 6459 4105 134 0 4 593 1 0 49 0 3 274 0 2 679 0 1 72 16 0 70 0 4 183 0 4 356 0 1 287 0 3 7 0 1 265 0 4 12 1 0 218 2 1 280 2 1 305 0 1 36 0 4 274 1 0 70 24 11 587 1 4 79 0 2 259 0 1 251 0 1 93 4 1 106 7 11 34 chain 48227 chr6 170805979 + 60552467 60553027 L1PA6 6164 + 5597 6157 30207 560 chain 26202 chr6 170805979 + 60561625 60561966 MLT2A1 477 + 0 357 47416 44 5 17 81 0 1 26 1 5 149 1 0 34 chain 160416 chr6 170805979 + 60562940 60564974 HERVL-int 5654 + 3592 5654 11728 144 4 9 1150 0 3 38 0 8 360 57 60 26 0 1 32 0 6 135 5 6 28 0 1 55 chain 26620 chr6 170805979 + 60564976 60565329 MLT2A1 477 + 2 357 46802 140 0 1 20 6 10 48 3 1 101 1 0 34 chain 481719 chr6 170805979 + 60578707 60585007 L1PA7 6471 + 5 6470 3593 188 67 66 70 24 194 198 5 15 499 0 4 11 10 7 157 1 4 137 1 0 204 1 0 35 4 5 102 3 0 241 0 1 47 4 5 437 28 9 60 13 4 477 0 2 383 0 4 35 1 0 64 0 1 165 1 0 138 0 1 604 0 3 52 1 0 174 0 2 455 6 0 6 1 7 149 13 0 69 0 1 36 0 1 80 0 3 50 7 14 394 1 4 306 8 44 10 36 0 18 0 1 8 1 0 4 chain 454831 chr6 170805979 + 60599849 60605178 L1PA4 6152 + 0 5351 4266 120 13 28 270 0 3 6 4 1 442 3 5 80 0 4 76 1 0 389 0 1 2555 0 1 1370 chain 88004 chr6 170805979 + 60654986 60656012 LTR5A 1029 + 0 1029 20044 111 0 3 915 chain 84676 chr6 170805979 + 60659955 60660975 LTR5A 1029 + 0 1029 20688 59 0 2 86 1 0 331 0 2 25 1 4 282 0 3 235 chain 53572 chr6 170805979 + 60726134 60726869 LTR17 781 + 0 769 28370 59 1 0 12 8 3 87 1 0 18 1 0 86 1 16 45 2 1 95 0 1 4 1 0 279 4 26 25 0 6 6 chain 220326 chr6 170805979 + 60861214 60863619 L1PA2 6032 + 3626 6031 9032 2247 0 7 9 7 0 142 chain 9674 chr6 170805979 + 60876998 60877192 Tigger1 2417 + 2202 2383 71111 10 14 0 40 2 0 55 1 2 25 23 26 4 1 0 19 chain 112274 chr6 170805979 + 60885902 60887272 L1PA8 5853 + 2133 3516 16780 348 0 4 236 1 0 124 0 5 42 4 0 360 1 10 254 chain 56921 chr6 170805979 + 60901354 60902055 L1PA10 4194 + 3448 4146 27293 33 0 1 600 1 0 24 0 1 4 1 0 5 3 0 30 chain 60779 chr6 170805979 + 60910217 60911252 MER11B 1079 + 0 1079 26158 101 9 11 246 0 5 94 18 17 22 19 48 118 154 164 46 4 5 9 4 3 160 18 17 13 chain 24219 chr6 170805979 + 60921332 60921603 L1PA5 6144 + 5871 6142 50462 271 chain 116690 chr6 170805979 + 60944328 60945684 SVA_B 1603 + 49 1603 16103 504 1 2 124 0 1 138 0 40 66 0 159 514 3 0 6 chain 235206 chr6 170805979 + 60965542 60968213 L1PA4 6152 + 3461 6140 8594 220 2 1 182 4 7 415 0 2 326 0 1 20 1 0 669 0 4 832 chain 14366 chr6 170805979 + 61022657 61022824 L1P1 4361 + 4003 4169 63088 148 1 0 18 chain 181709 chr6 170805979 + 61026011 61028090 L1PA4 6152 + 3268 5355 10513 28 0 1 404 1 2 348 0 1 1252 0 5 46 chain 395845 chr6 170805979 + 61093349 61097829 L1PA3long 6157 + 1671 6157 5219 1621 0 1 1677 0 1 852 0 1 72 0 1 117 0 1 65 0 1 76 chain 164587 chr6 170805979 + 61107747 61109709 L1P1 4361 + 15 1979 11449 373 3 0 645 0 1 693 0 4 248 chain 48036 chr6 170805979 + 61137315 61137847 L1PA3long 6157 + 2644 3177 30283 501 0 1 31 chain 125030 chr6 170805979 + 61137848 61139243 L1PA3long 6157 + 3177 4578 14697 690 0 2 485 0 4 220 chain 29319 chr6 170805979 + 61182027 61182343 AluYb8 318 + 0 314 42850 132 2 0 182 chain 455428 chr6 170805979 + 61183883 61189612 L1PA7 6471 + 711 6463 4248 31 7 12 62 6 5 431 0 19 63 7 8 4 1 0 111 1 2 164 0 1 7 1 0 138 3 4 742 8 3 68 0 1 44 2 1 74 0 2 58 2 0 379 1 0 16 3 4 307 0 3 9 1 2 514 0 1 169 2 1 144 2 0 315 11 11 23 0 4 315 1 2 359 0 1 270 1 0 6 2 0 339 9 6 355 10 11 131 chain 12951 chr6 170805979 + 61226914 61227058 L1PA3long 6157 + 5859 6003 65178 144 chain 13666 chr6 170805979 + 61227060 61227210 L1PA3long 6157 + 6007 6157 64063 150 chain 13551 chr6 170805979 + 61227233 61227382 L1PA7 6471 + 5612 5761 64249 149 chain 39109 chr6 170805979 + 61227382 61227844 L1PA7 6471 + 5771 6233 35279 462 chain 41120 chr6 170805979 + 61237697 61238379 L1MA1 4479 + 3545 4186 33901 60 4 1 108 1 0 25 2 0 14 1 0 55 23 12 6 1 0 18 18 15 88 1 0 5 3 0 126 3 2 27 3 0 35 1 0 9 1 0 7 5 2 12 6 0 14 chain 73014 chr6 170805979 + 61246772 61247825 L1PA11 4918 + 3096 4142 23312 314 8 1 18 1 2 103 0 1 6 2 1 122 1 2 11 1 0 10 22 23 27 0 1 9 25 22 69 4 5 224 1 0 75 chain 3417 chr6 170805979 + 61265037 61265078 MER94 134 + 78 119 95921 41 chain 243758 chr6 170805979 + 61270619 61273538 L1PA4 6152 + 2256 5186 8384 383 3 2 21 1 2 246 1 2 265 0 1 85 0 1 4 0 3 507 0 1 178 10 12 694 8 9 268 0 1 245 chain 34014 chr6 170805979 + 61305725 61306108 L1PA3long 6157 + 5774 6157 38697 383 chain 397808 chr6 170805979 + 61520739 61525394 L1PA4 6152 + 1455 6152 5185 181 6 22 131 9 28 350 0 1 93 4 1 57 0 1 788 0 1 261 7 1 691 0 1 223 0 2 345 1 2 647 0 4 98 0 1 580 0 1 170 0 3 13 chain 501204 chr6 170805979 + 61531495 61537897 L1PA7 6471 + 0 6457 3092 196 1 2 27 0 10 3 10 0 168 1 2 65 2 0 10 0 1 130 0 1 600 0 4 48 0 1 504 0 4 101 0 1 574 14 7 105 3 4 63 15 15 416 4 3 35 0 4 445 0 4 53 0 1 11 0 1 217 8 6 175 0 1 138 7 10 39 1 2 62 0 1 48 0 21 134 1 0 107 0 1 85 3 0 121 0 7 24 0 4 133 1 0 665 0 4 94 0 3 407 10 11 318 chain 60286 chr6 170805979 + 61574925 61575740 L1PB2 3958 + 3027 3838 26301 52 9 14 214 2 0 56 1 0 11 5 0 65 2 0 12 4 0 40 0 8 46 1 0 72 1 0 62 1 0 65 0 1 30 1 0 63 chain 2915 chr6 170805979 + 61578199 61578232 MADE1 96 - 63 96 100713 33 chain 4605 chr6 170805979 + 61580272 61580766 LTR12_ 688 + 94 655 87777 44 348 385 17 55 85 30 chain 28394 chr6 170805979 + 61588800 61589235 L1PA8 5853 + 5428 5848 44278 92 1 2 42 1 0 41 5 3 70 4 1 9 1 0 7 7 0 45 23 21 87 chain 213662 chr6 170805979 + 61601241 61603988 HERVH-int 3825 + 528 3825 9212 30 0 208 12 1 0 451 15 0 202 9 0 596 57 16 8 0 41 568 0 3 311 31 393 43 7 8 207 4 5 195 chain 5190 chr6 170805979 + 61636542 61636628 MER20 218 + 22 106 84724 9 6 0 52 4 8 15 chain 49811 chr6 170805979 + 61638069 61638626 L1PA3long 6157 + 4559 5115 29635 4 1 0 552 chain 60489 chr6 170805979 + 61643248 61644277 L1PREC2 3366 + 2006 3006 26236 94 0 1 162 0 3 29 46 46 63 0 5 13 19 18 146 0 1 4 1 0 120 6 7 34 2 0 53 2 1 44 50 38 17 31 24 22 36 20 35 chain 143282 chr6 170805979 + 61661639 61663228 L1PA4 6152 + 4381 5969 12835 920 1 0 668 chain 63941 chr6 170805979 + 61673291 61673986 L1PA3long 6157 + 4012 4707 25425 695 chain 307837 chr6 170805979 + 61723584 61727921 L1PA11 4918 + 276 4629 6666 137 0 4 21 0 1 123 0 2 20 9 16 148 5 4 8 1 0 318 0 2 25 7 8 103 0 2 129 1 3 201 1 0 215 0 2 45 1 2 86 0 1 25 0 9 207 38 39 32 0 1 344 8 0 43 7 11 293 0 26 337 1 2 252 6 7 99 1 0 261 9 1 161 0 1 131 6 8 40 14 4 92 1 0 61 9 8 9 1 2 33 0 4 30 2 0 6 8 7 20 39 31 14 1 0 14 2 0 11 7 1 4 1 0 12 23 16 18 chain 526492 chr6 170805979 + 61769181 61777298 L1PA4 6152 + 6 6151 1980 352 18 0 102 6 0 120 1 0 2240 0 15 123 12 15 290 0 7 169 1980 0 75 0 2 668 0 1 120 1 0 358 1 2 71 0 1 567 0 4 63 0 1 4 1 0 775 chain 5159 chr6 170805979 + 61778052 61778109 L1PREC2 3366 + 2182 2239 84871 57 chain 168657 chr6 170805979 + 61869566 61871852 L1P3 4156 + 0 2299 11171 64 2 3 47 1 6 123 0 1 7 9 8 61 2 1 81 17 0 8 9 6 53 4 0 102 3 0 37 24 14 48 7 9 26 1 2 223 6 24 171 0 1 123 13 32 348 0 1 362 0 3 304 chain 170884 chr6 170805979 + 61891573 61893499 L1PA4 6152 + 3811 5741 11057 1493 0 4 433 chain 24820 chr6 170805979 + 61914388 61914663 L1PA4 6152 + 5870 6146 49555 168 0 1 107 chain 90358 chr6 170805979 + 61956942 61958011 MER11C 1089 + 0 1073 19616 317 0 4 97 1 0 181 0 1 363 0 1 25 1 0 84 chain 123504 chr6 170805979 + 62003450 62005007 L1P1 4361 + 2414 3976 14939 102 0 1 4 0 3 7 5 2 288 7 20 355 4 1 23 0 4 193 12 5 249 3 0 305 chain 30399 chr6 170805979 + 62032133 62032604 MLT2A1 477 + 0 475 41675 54 9 7 51 0 2 57 11 9 24 0 1 188 2 0 18 1 0 15 23 31 18 chain 55920 chr6 170805979 + 62049740 62050440 L1PA7 6471 + 5760 6470 27585 338 3 0 214 2 11 131 0 4 12 chain 346219 chr6 170805979 + 62062024 62065796 L1PA2 6032 + 2261 6032 5963 2995 1 0 776 chain 230344 chr6 170805979 + 62106524 62109107 L1PA3long 6157 + 3560 6157 8738 124 0 16 1684 1 0 35 1 0 394 5 6 186 7 6 146 chain 2401 chr6 170805979 + 62109901 62109943 L1ME1 1623 + 718 753 104153 6 1 0 20 6 0 9 chain 245541 chr6 170805979 + 62197647 62200446 L1PA4 6152 + 2547 5351 8340 623 0 1 28 0 1 254 1 0 14 0 1 214 1 0 665 0 4 999 chain 42816 chr6 170805979 + 62309396 62310224 L1PB1 5432 + 4645 5413 32879 67 1 2 98 3 0 3 7 0 222 9 10 5 1 0 51 1 2 9 63 0 8 68 99 16 1 0 44 1 0 15 3 0 16 7 0 10 13 10 14 2 0 24 1 0 22 1 0 12 1 0 9 chain 6970 chr6 170805979 + 62311922 62312038 MLT1B 390 + 55 170 77713 64 19 18 33 chain 536461 chr6 170805979 + 62312040 62318195 L1PA4 6152 + 3 6151 1536 69 1 0 308 1 8 638 52 8 28 0 2 150 0 1 201 0 5 107 1 2 155 0 1 4 0 17 612 0 1 711 3 0 152 1 0 1705 1 0 394 1 0 819 2 11 39 chain 7684 chr6 170805979 + 62318384 62318485 MLT1B 390 + 289 390 75662 101 chain 49986 chr6 170805979 + 62347221 62347770 L1PA4 6152 + 5447 5997 29564 294 0 1 255 chain 12455 chr6 170805979 + 62347771 62347909 L1PA4 6152 + 6005 6143 66059 138 chain 65168 chr6 170805979 + 62369573 62370368 LTR12 884 + 0 884 25139 289 0 88 65 1 2 440 chain 239804 chr6 170805979 + 62416571 62419282 L1PA5 6144 + 3402 6132 8478 93 0 1 546 1 0 978 0 12 188 0 1 70 0 4 87 0 1 289 0 2 321 1 0 137 chain 147987 chr6 170805979 + 62423290 62425148 L1PA7 6471 + 4609 6469 12483 341 1 0 401 0 11 238 24 14 96 1 0 427 0 2 138 11 7 158 1 0 11 0 6 10 chain 512213 chr6 170805979 + 62491726 62498187 L1PA7 6471 + 3 6466 2658 332 0 2 361 10 9 595 0 4 72 0 1 382 0 1 296 9 8 76 2 1 43 0 6 440 12 0 257 0 4 604 1 0 26 3 0 26 0 4 69 0 1 25 0 12 175 2 0 257 1 2 270 0 1 327 6 5 132 0 1 73 8 9 10 0 1 32 7 5 617 0 2 20 2 0 8 5 7 10 18 7 211 4 3 291 4 3 317 3 0 10 chain 40182 chr6 170805979 + 62547560 62548012 L1PA4 6152 + 5695 6152 34531 446 0 5 6 chain 48497 chr6 170805979 + 62551770 62552312 L1PA4 6152 + 3200 3742 30119 542 chain 415721 chr6 170805979 + 62555076 62559734 L1PA3long 6157 + 4 6156 4945 376 0 1492 955 0 1 3318 0 1 9 chain 12796 chr6 170805979 + 62572589 62572790 MER44A 345 + 113 314 65447 142 31 31 28 chain 17823 chr6 170805979 + 62578561 62578755 L1PA3long 6157 + 4914 5108 58858 194 chain 140026 chr6 170805979 + 62586382 62588219 HERVH-int 3825 + 0 1840 13095 530 1 0 11 1 0 4 0 1 24 2 1 9 1 0 10 4 0 7 6 0 6 3 1 14 1 0 2 0 18 19 0 20 9 2 0 10 2 1 24 20 0 8 2 1 48 0 1 452 15 0 198 9 0 29 0 2 10 1 0 215 4 31 124 chain 55813 chr6 170805979 + 62595261 62595967 THE1A-int 1579 + 862 1579 27623 281 17 28 408 chain 16875 chr6 170805979 + 62615065 62615397 THE1B 368 + 0 356 59937 44 25 40 19 6 7 62 13 11 15 35 45 113 chain 49123 chr6 170805979 + 62649165 62649789 HERVL-int 5654 + 5026 5654 29900 252 0 1 69 0 2 69 13 14 221 chain 6430 chr6 170805979 + 62683182 62683262 MADE1 96 + 0 96 79568 49 0 16 31 chain 124862 chr6 170805979 + 62688780 62690219 L1PA5 6144 + 4707 6144 14729 343 1 0 106 0 1 559 0 2 92 1 2 176 3 0 144 3 1 11 chain 99509 chr6 170805979 + 62695750 62696877 L1PA4 6152 + 4061 5185 18352 711 3 0 400 1 0 4 0 1 8 chain 6251 chr6 170805979 + 62712648 62712725 L1PB4 2604 + 2475 2552 80173 77 chain 30111 chr6 170805979 + 62766190 62766668 LTR2B 499 + 5 499 41932 7 0 1 56 4 0 41 69 88 106 4 5 8 1 0 182 chain 237795 chr6 170805979 + 62792027 62795052 HERVH-int 3825 + 0 3120 8527 279 18 21 33 1 0 32 14 15 71 22 0 6 4 28 45 1 0 40 1 0 10 1 0 20 1 31 12 0 120 17 59 0 554 0 2 1463 1 0 84 1 2 235 chain 10074 chr6 170805979 + 62809308 62809417 L1PA2 6032 + 5922 6031 70240 109 chain 120662 chr6 170805979 + 62826111 62831061 L1PA6 6164 + 4101 5838 15416 110 8 9 401 3355 130 48 0 1 41 0 8 465 0 1 285 0 1 237 chain 364916 chr6 170805979 + 62948457 62952563 L1PA4 6152 + 2044 6152 5734 276 1 0 871 0 1 697 0 1 50 0 1 2211 chain 176274 chr6 170805979 + 62985568 62987867 L1PA7 6471 + 3031 6469 10766 78 0 2 126 0 5 83 0 1108 252 1 0 59 5 21 58 0 2 7 1 0 123 21 20 347 0 1 276 0 4 16 1 0 69 0 1 9 0 2 55 15 18 158 0 2 467 1 0 46 1 2 7 3 0 14 chain 133877 chr6 170805979 + 63002124 63003646 L1PA3long 6157 + 3813 5338 13667 83 0 2 265 1 2 1173 chain 243755 chr6 170805979 + 63005885 63009211 HERVH-int 3825 + 0 3825 8385 11 0 2 320 1 0 31 15 16 30 11 10 23 80 43 29 52 255 8 1 0 458 20 5 190 9 0 348 0 1 85 1 2 66 0 15 6 0 1 897 24 0 122 34 396 379 0 1 75 chain 456020 chr6 170805979 + 63052978 63058215 L1PA3long 6157 + 49 6147 4234 99 0 12 566 0 4 198 2 7 254 0 3 40 2 1 173 0 835 528 0 1 1062 0 1 31 0 1 31 0 2 2116 6 7 58 7 4 64 chain 8209 chr6 170805979 + 63099794 63099896 MER41B 635 + 511 613 74390 102 chain 19218 chr6 170805979 + 63121605 63121817 L1PA3long 6157 + 5597 5809 57332 212 chain 31503 chr6 170805979 + 63121820 63122168 L1PA3long 6157 + 5809 6157 40734 348 chain 16173 chr6 170805979 + 63146555 63146854 THE1D 372 + 47 349 60784 22 31 33 64 40 42 16 1 0 125 chain 69802 chr6 170805979 + 63146910 63148016 L1MA2 4263 + 2874 4028 24042 21 1 10 258 0 4 90 1 5 92 11 8 204 1 0 7 12 11 7 2 0 71 1 0 51 25 13 67 6 0 16 20 79 70 47 45 25 chain 140202 chr6 170805979 + 63163354 63165221 SVA_A 1864 + 6 1864 13085 10 2 1 76 0 1 407 0 40 36 0 2 74 40 0 28 9 6 72 66 28 90 2 0 9 1 0 40 1 41 94 2 0 84 1 0 100 2 0 29 8 5 548 2 3 34 chain 2320 chr6 170805979 + 63163959 63163995 SVA_A 1864 + 727 763 31254 36 chain 503554 chr6 170805979 + 63166989 63173109 L1PA6 6164 + 0 6149 3010 138 0 2 54 6 5 37 0 2 107 10 11 163 0 2 46 1 0 220 0 17 450 2 1 941 0 1 354 3 5 165 1 6 335 5 6 117 1 0 4 0 1 1452 5 1 263 5 6 406 0 1 507 1 2 321 chain 4321 chr6 170805979 + 63174349 63174395 MADE1 96 + 0 46 89351 46 chain 113217 chr6 170805979 + 63206096 63207578 THE1A-int 1579 + 0 1579 16645 153 0 3 128 0 1 188 7 24 188 8 9 212 7 9 158 3 71 350 0 5 80 chain 490218 chr6 170805979 + 63362245 63368101 L1PA5 6144 + 3 6144 3416 132 7 33 117 1 0 415 0 2 98 0 17 10 22 5 324 0 3 10 9 0 433 0 1 67 0 2 39 24 292 28 0 1 277 16 9 608 0 1 275 1 0 670 10 9 1810 6 6 447 chain 6018 chr6 170805979 + 63377948 63378027 Tigger1 2417 + 630 708 81012 47 1 0 31 chain 33511 chr6 170805979 + 63392630 63394758 MER41B 635 + 0 635 39083 55 1603 106 37 1 2 57 11 0 60 0 11 48 7 5 76 19 23 28 0 1 126 chain 287594 chr6 170805979 + 63405630 63408860 L1HS 6032 + 1968 5198 7211 1215 1 0 852 1 2 1161 chain 99291 chr6 170805979 + 63438262 63439365 L1PA3long 6157 + 5054 6157 18376 481 0 1 562 1 0 59 chain 9658 chr6 170805979 + 63471750 63471979 MLT1A 405 + 26 282 71145 56 4 5 40 1 0 22 78 104 4 0 1 24 chain 18877 chr6 170805979 + 63480619 63480940 L1PB3 3668 + 3172 3476 57672 49 15 14 53 1 0 90 43 28 70 chain 25549 chr6 170805979 + 63520875 63521228 L1PA8 5853 + 5486 5853 48404 74 1 0 49 2 0 64 7 6 9 2 1 29 3 23 22 1 0 90 chain 16926 chr6 170805979 + 63542073 63542412 L1PB1 5432 + 5114 5420 59879 24 1 0 8 1 0 12 5 1 10 2 0 51 2 1 15 1 0 44 1 0 13 29 15 19 8 5 14 2 0 24 1 0 13 9 8 13 1 0 16 chain 79284 chr6 170805979 + 63585263 63586314 L1PA10 4194 + 3118 4142 21784 21 1 3 91 27 5 62 5 0 158 9 10 463 0 2 178 2 0 6 3 0 25 chain 24603 chr6 170805979 + 63672653 63673018 MER57A1 433 + 0 368 49864 21 0 1 14 0 2 46 15 17 77 9 11 95 4 0 35 0 1 4 1 0 44 chain 90437 chr6 170805979 + 63737739 63738747 L1PA3long 6157 + 5150 6157 19600 234 1 0 773 chain 25038 chr6 170805979 + 63740149 63740493 THE1B 368 + 0 368 49215 44 0 16 69 0 3 66 3 0 108 19 27 35 chain 88195 chr6 170805979 + 63756655 63757770 MER11A 1151 + 0 1151 20004 17 0 1 181 2 0 28 0 4 63 0 2 6 1 0 86 0 1 416 6 5 23 0 1 28 3 0 6 0 35 182 7 6 60 chain 26531 chr6 170805979 + 63763431 63763808 THE1C 375 + 0 375 46930 87 4 5 87 22 19 57 0 1 94 1 0 25 chain 21158 chr6 170805979 + 63786406 63786699 L1PA8 5853 + 5565 5853 54936 43 2 0 74 1 0 6 2 1 51 2 1 19 1 0 39 0 1 53 chain 21489 chr6 170805979 + 63787679 63787948 AluSp 311 + 20 292 54521 89 7 9 163 0 1 10 chain 11294 chr6 170805979 + 63802313 63802463 L1PA8 5853 + 5705 5853 68088 35 2 1 19 4 3 90 chain 6648 chr6 170805979 + 63808821 63808956 MER33 330 + 117 273 78819 9 1 0 27 20 43 56 4 3 18 chain 276671 chr6 170805979 + 63824473 63828491 L1PBa1 4058 + 82 3798 7530 75 0 1 95 6 0 60 6 1 111 4 3 138 1 0 25 8 11 16 23 22 354 7 15 285 4 5 363 3 0 20 0 2 120 1 8 223 3 0 331 2 0 100 27 6 130 0 4 32 1 0 11 0 6 78 6 7 243 0 4 96 3 4 71 320 0 113 16 17 22 7 6 110 3 10 206 0 5 18 10 25 11 1 0 41 2 0 56 chain 36737 chr6 170805979 + 63828551 63829104 L1PB1 5432 + 4542 5089 36934 67 5 9 47 0 13 119 0 1 4 14 13 67 31 11 60 1 0 119 0 1 10 3 0 6 chain 463970 chr6 170805979 + 63829109 63834584 L1PA5 6144 + 0 5515 4022 120 4 18 13 22 34 944 0 1 39 16 7 270 0 4 946 0 2 48 2 0 102 0 1 787 0 1 1001 5 13 888 0 1 5 2 1 47 0 8 214 chain 28163 chr6 170805979 + 63843505 63843848 L1PA7 6471 + 4213 4559 44612 39 1 0 166 0 4 137 chain 411656 chr6 170805979 + 63849113 63854619 L1PA8 5853 + 108 5853 5010 197 0 4 167 20 34 406 0 1 498 2 0 134 1 5 222 7 8 326 11 12 154 11 12 139 0 1 232 13 14 88 0 1 118 0 1 6 318 0 46 3 7 14 0 4 159 8 6 462 1 0 141 8 9 923 0 528 79 0 1 297 1 0 44 2 0 26 0 1 45 1 0 8 1 0 52 2 1 19 10 9 84 chain 27987 chr6 170805979 + 63880080 63880454 MLT2A1 477 + 1 393 44891 141 0 1 26 0 4 22 1 16 36 1 0 77 1 0 58 1 0 5 0 1 5 chain 504390 chr6 170805979 + 63887362 63893726 L1PA7 6471 + 3 6461 2987 140 0 15 8 21 6 231 0 1 129 0 12 98 0 7 194 0 1 477 0 1 18 4 5 476 1 2 70 0 3 68 0 12 125 0 2 30 7 9 483 0 6 76 0 3 144 0 16 321 0 3 273 1 0 13 0 1 67 5 9 11 7 11 244 13 13 62 0 2 439 6 8 159 0 1 11 1 3 7 0 1 148 0 2 941 2 1 96 0 3 120 2 3 33 5 6 254 1 0 86 0 1 190 1 5 35 3 0 7 chain 5392 chr6 170805979 + 63894891 63894953 MLT1C 463 + 401 463 83735 62 chain 82502 chr6 170805979 + 63933966 63934904 L1PA4 6152 + 5203 6152 21121 97 1 5 224 0 1 606 0 6 10 chain 4196 chr6 170805979 + 63946863 63946942 L1MA3 4352 + 4239 4314 90148 19 2 0 24 13 11 21 chain 15452 chr6 170805979 + 63966114 63966491 L1PB1 5432 + 5067 5413 61724 35 16 12 24 26 20 9 2 0 53 2 1 10 14 13 37 36 27 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 9 chain 4219 chr6 170805979 + 63979169 63979324 MER58A 224 + 49 217 90016 30 87 100 38 chain 15837 chr6 170805979 + 63985706 63985982 L1PA14 3548 + 3186 3456 61239 35 1 0 12 0 1 35 0 4 58 1 0 11 5 1 36 4 2 12 7 5 16 7 6 36 chain 29470 chr6 170805979 + 64003672 64004047 THE1C 375 + 0 375 42639 167 0 1 18 1 0 189 chain 105655 chr6 170805979 + 64023636 64024943 LTR12C 1709 + 42 1709 17602 168 11 10 118 0 43 409 14 328 106 0 4 481 chain 56011 chr6 170805979 + 64030991 64031829 LTR12C 1709 + 0 837 27562 17 1 15 53 8 10 243 0 43 79 16 7 142 0 1 149 1 0 31 56 5 42 chain 220 chr6 170805979 + 64031752 64031787 LTR12C 1709 + 1126 1161 29522 35 chain 3154 chr6 170805979 + 64031829 64032331 LTR12C 1709 + 1203 1709 29522 21 0 4 481 chain 25765 chr6 170805979 + 64125498 64125809 AluY 311 + 0 306 48075 22 5 0 284 chain 32194 chr6 170805979 + 64156442 64156866 THE1A-int 1579 + 0 429 40193 12 14 15 100 0 1 22 3 6 273 chain 23465 chr6 170805979 + 64182933 64183314 THE1C 375 + 0 375 51643 15 2 0 46 33 34 35 1 0 49 22 19 151 1 0 26 chain 98647 chr6 170805979 + 64192404 64196900 L1PA3long 6157 + 4719 6153 18455 351 3350 288 795 chain 59176 chr6 170805979 + 64199080 64199825 L1PA8 5853 + 4339 5098 26615 68 6 8 145 0 1 131 1 6 28 0 1 279 3 0 5 5 16 7 2 0 60 1 0 4 chain 31700 chr6 170805979 + 64235787 64236140 L1P1 4361 + 3446 3799 40579 353 chain 212043 chr6 170805979 + 64300448 64303470 HERVK22-int 3844 + 12 3844 9280 28 63 64 124 4 5 61 0 4 7 4 0 42 20 29 232 12 12 484 12 22 803 11 8 49 0 1 247 0 3 33 0 7 79 0 3 252 8 58 91 109 186 62 1 654 88 1 0 77 1 0 17 chain 28857 chr6 170805979 + 64303561 64303861 AluYg6 310 + 1 301 43543 300 chain 484811 chr6 170805979 + 64311577 64318183 L1PA7 6471 + 0 6466 3536 141 28 32 27 5 4 175 9 8 16 5 0 112 0 1 5 2 1 324 1 0 10 1 2 498 0 1 62 0 1 687 3 19 506 15 0 257 0 4 20 0 97 76 2 3 86 0 1 27 0 3 69 0 5 223 1 0 276 0 5 5 0 3 42 3 4 162 1 0 80 300 0 464 9 10 119 1 5 105 1 0 4 0 1 71 7 8 82 1 0 328 1 0 4 0 1 66 8 9 42 0 1 69 0 5 38 0 20 11 1 0 56 0 4 23 0 4 166 1 2 339 1 2 296 4 5 26 chain 8620 chr6 170805979 + 64315637 64315759 L1PA7 6471 + 3878 4000 73410 46 2 0 8 5 7 61 chain 2592 chr6 170805979 + 64315760 64315792 L1PA7 6471 + 4000 4032 103054 32 chain 37051 chr6 170805979 + 64326107 64326607 HERV1_LTRc 486 + 0 479 36708 60 0 5 27 6 0 113 30 15 212 5 0 47 chain 37888 chr6 170805979 + 64335152 64335672 HERV1_LTRc 486 + 0 486 36152 89 1 0 6 14 0 121 17 4 59 1 0 140 15 10 57 chain 317706 chr6 170805979 + 64335672 64340010 L1PB1 5432 + 1001 5395 6452 184 1 0 212 7 0 8 1 7 118 0 1 70 20 25 27 0 1 80 0 6 754 7 1 115 8 3 7 0 5 973 1 2 122 5 6 129 5 0 83 13 15 350 1 0 191 0 5 128 2 0 14 0 1 59 0 2 107 29 29 13 2 0 141 1 2 4 1 0 38 0 75 24 1 0 18 6 2 9 2 0 53 0 2 15 1 0 44 1 0 14 79 62 13 1 0 21 1 0 4 chain 323250 chr6 170805979 + 64342290 64345919 L1PA4 6152 + 1711 5358 6348 467 0 10 498 2 1 450 0 1 199 0 1 178 1 0 447 0 9 663 1 0 723 chain 541610 chr6 170805979 + 64389760 64395796 L1PA2 6032 + 2 6032 1227 83 1 0 166 6 5 985 1 0 1329 1 0 680 3 0 976 0 1 433 0 1 1205 8 7 159 chain 12248 chr6 170805979 + 64405339 64405476 L1PA7 6471 + 4319 4456 66374 137 chain 48815 chr6 170805979 + 64405477 64406113 L1PA7 6471 + 4458 5113 30009 295 0 1 12 0 3 102 0 17 22 1 0 75 8 7 121 chain 111003 chr6 170805979 + 64406115 64407455 L1PA7 6471 + 5113 6465 16935 508 0 3 76 0 2 10 0 3 214 1 6 103 0 1 420 2 0 6 chain 533293 chr6 170805979 + 64447991 64454018 L1PA4 6152 + 121 6152 1693 2184 9 8 377 0 1 446 0 1 71 1 0 77 1 0 652 0 1 302 0 1 993 0 3 914 chain 79906 chr6 170805979 + 64469275 64470273 LTR13 1007 + 0 1007 21640 374 11 12 242 2 1 65 1 4 114 0 1 92 0 5 97 chain 29250 chr6 170805979 + 64544553 64544890 L1PA4 6152 + 3170 3507 42963 337 chain 132258 chr6 170805979 + 64544891 64546375 L1PA4 6152 + 3509 4993 13800 1484 chain 97498 chr6 170805979 + 64546375 64548830 L1PA4 6152 + 4994 6143 18591 360 1 0 160 1330 25 604 chain 28826 chr6 170805979 + 64550474 64550822 L1P1 4361 + 3994 4341 43587 85 0 2 70 1 0 154 1 0 23 2 1 12 chain 16237 chr6 170805979 + 64552948 64553223 MER4D1 891 + 628 891 60707 27 56 43 120 1 0 35 0 2 36 chain 16434 chr6 170805979 + 64564652 64564850 L1PA7 6471 + 6175 6365 60466 134 8 0 56 chain 442977 chr6 170805979 + 64568438 64574421 L1PA7 6471 + 756 6456 4515 110 0 2 207 6 7 259 0 2 5 25 8 15 0 1 13 8 11 42 0 1 332 306 4 91 4 1 27 0 3 11 0 4 123 1 0 136 0 1 398 1 11 59 0 1 130 2 0 22 0 1 95 6 10 306 8 7 85 5 9 96 0 1 119 2 0 6 0 1 193 0 1 101 0 1 169 0 2 8 10 6 6 3 0 93 5 11 302 0 23 81 22 0 142 0 4 277 2 0 424 4 0 247 9 12 78 1 0 605 0 1 140 chain 24616 chr6 170805979 + 64594435 64594708 L1PA4 6152 + 5735 6008 49846 273 chain 13250 chr6 170805979 + 64594708 64594850 L1PA4 6152 + 6009 6151 64710 142 chain 56872 chr6 170805979 + 64636030 64636677 L1PA4 6152 + 4580 5227 27308 647 chain 9448 chr6 170805979 + 64636677 64636782 L1PA4 6152 + 5228 5333 71608 105 chain 104572 chr6 170805979 + 64639539 64640729 L1PA3long 6157 + 4967 6157 17748 32 0 3 532 3 0 276 3 1 7 0 1 50 0 1 287 chain 172047 chr6 170805979 + 64658799 64660740 L1PA4 6152 + 2548 4492 10995 230 0 3 1711 chain 185740 chr6 170805979 + 64688839 64690980 L1PA5 6144 + 4000 6135 10312 622 5 0 1155 2 0 33 0 1 324 chain 124560 chr6 170805979 + 64704837 64707380 L1PB1 5432 + 3323 5326 14769 155 21 25 44 5 1 180 6 4 85 0 5 140 0 1 58 494 0 301 1 5 8 2 0 8 3 10 136 0 1 136 4 0 81 0 1 4 11 10 71 10 1 13 45 53 125 4 12 17 0 2 42 108 66 10 1 0 6 5 4 12 18 12 52 18 16 44 1 0 12 28 16 18 chain 37730 chr6 170805979 + 64705551 64705993 L1PA3long 6157 + 5721 6157 36255 284 1 0 5 7 0 140 0 2 5 chain 24706 chr6 170805979 + 64710324 64710677 MER51C 639 + 241 613 49723 48 9 27 123 8 10 117 1 0 47 chain 27127 chr6 170805979 + 64731086 64731473 L1PA7 6471 + 5267 5619 46082 208 0 1 21 41 1 53 0 4 64 chain 56594 chr6 170805979 + 64731482 64732163 L1PA7 6471 + 5631 6312 27391 681 chain 12922 chr6 170805979 + 64732164 64732318 L1PA7 6471 + 6314 6470 65216 142 0 2 12 chain 77065 chr6 170805979 + 64889496 64890545 MER11C 1089 + 0 1069 22301 247 0 9 57 0 4 68 1 0 147 87 81 75 0 4 7 1 0 38 0 1 36 0 8 81 0 1 22 0 1 33 1 0 144 0 1 4 chain 390423 chr6 170805979 + 64896140 64901293 L1PA7 6471 + 4 6364 5313 224 31 31 143 6 0 10 14 5 280 36 31 240 0 3 118 0 1 115 0 1 58 1 0 5 20 21 619 0 1 169 0 1 71 0 1 151 12 13 127 2 1 175 0 1 17 1 0 5 13 9 31 0 1 12 0 1 404 0 4 21 0 1 96 0 1239 194 12 7 12 10 0 78 10 11 67 0 1 118 3 0 68 4 5 303 0 1 5 2 1 215 0 1 73 1 0 203 11 1 299 0 1 229 0 1 9 chain 14706 chr6 170805979 + 64933293 64933467 L1PA7 6471 + 5619 5793 62672 174 chain 42089 chr6 170805979 + 64933467 64933986 L1PA7 6471 + 5794 6320 33297 243 0 1 225 1 9 43 2 0 5 chain 11598 chr6 170805979 + 64933991 64934146 L1PA7 6471 + 6326 6470 67574 66 11 0 78 chain 53964 chr6 170805979 + 64944492 64945123 LTR5A 1029 + 301 938 28240 578 0 6 53 chain 27928 chr6 170805979 + 64958465 64958763 AluYd8 298 + 0 298 44988 298 chain 10144 chr6 170805979 + 64993259 64993369 L1PA4 6152 - 433 543 70119 110 chain 84486 chr6 170805979 + 65002702 65003752 MER11C 1089 + 0 1069 20715 246 0 9 62 0 4 369 0 4 5 1 0 33 0 1 4 0 1 127 0 1 50 1 0 148 0 1 4 chain 42324 chr6 170805979 + 65004991 65005494 LTR17 781 + 255 781 33174 72 0 1 384 7 29 40 chain 369274 chr6 170805979 + 65007016 65011327 HERV17-int 4347 + 12 4347 5672 6 0 1 7 2 1 47 8 7 28 1 0 4 2 0 25 2 1 42 0 1 236 1 0 75 0 1 104 0 2 87 0 8 474 0 3 103 0 2 77 2 0 557 1 0 49 0 1 301 0 3 352 0 5 298 0 1 224 1 0 90 0 1 78 0 5 18 0 1 1009 chain 28568 chr6 170805979 + 65011641 65011967 LTR17 781 + 0 326 44001 326 chain 85068 chr6 170805979 + 65140554 65141503 L1PA4 6152 + 5203 6152 20608 949 chain 249640 chr6 170805979 + 65178454 65181253 L1PA4 6152 + 2380 5186 8248 791 3 0 83 0 5 233 1 5 443 0 1 1245 chain 39543 chr6 170805979 + 65273382 65273916 LTR61 567 + 6 567 34990 19 0 1 29 0 11 125 2 4 17 2 0 23 11 26 306 chain 4076 chr6 170805979 + 65278392 65278439 MLT2B4 540 + 489 536 90921 47 chain 10775 chr6 170805979 + 65339422 65339561 MER44A 345 + 112 253 68912 57 0 2 82 chain 23027 chr6 170805979 + 65361081 65361365 L1PA4 6152 + 5861 6143 52316 139 3 4 7 3 0 132 chain 446827 chr6 170805979 + 65374730 65381628 L1PA8 5853 + 53 5848 4440 19 64 41 192 0 4 56 1 0 302 3 1 235 2 13 347 0 2 61 0 1 229 0 1 4 1 0 344 0 2 98 0 1 19 0 1 165 5 4 280 13 9 167 1 5 419 15 1 57 16 0 23 1 2 153 1062 0 904 2 0 147 0 1 93 2 0 553 0 2 170 12 14 369 1 0 44 2 0 72 1 0 11 12 10 39 2 1 19 1 0 88 chain 83776 chr6 170805979 + 65378025 65379044 L1PA7 6471 + 5452 6467 20852 169 1 0 47 1 0 128 1 2 656 3 0 13 chain 173014 chr6 170805979 + 65391414 65393322 L1PA3long 6157 + 4239 6147 10952 1908 chain 34073 chr6 170805979 + 65418392 65418818 L1PA8A 6298 + 5851 6291 38652 171 7 0 129 0 21 119 chain 10018 chr6 170805979 + 65463787 65463916 MER85 139 + 0 139 70384 88 1 11 40 chain 133982 chr6 170805979 + 65488389 65490133 L1PA7 6471 + 4740 6464 13658 16 18 0 843 0 2 15 9 8 357 0 1 155 3 0 176 5 6 59 0 1 21 2 1 58 2 0 5 chain 309017 chr6 170805979 + 65512554 65515951 L1PA3long 6157 + 2758 6157 6638 1606 0 2 1791 chain 34337 chr6 170805979 + 65533152 65533564 L1P1 4361 + 3301 3712 38465 209 1 0 202 chain 25588 chr6 170805979 + 65537023 65537355 L1PA7 6471 + 6136 6468 48338 178 2 1 5 0 1 147 chain 100606 chr6 170805979 + 65551058 65552130 L1HS 6032 + 4249 5321 18225 1072 chain 160772 chr6 170805979 + 65563848 65566105 L1PA7 6471 + 4528 6469 11698 138 0 8 55 1 0 220 1 0 466 3 0 202 1 4 15 324 0 820 0 2 11 chain 25562 chr6 170805979 + 65569016 65569407 LTR7 482 + 0 476 48384 101 15 14 17 0 51 41 5 37 24 20 22 79 0 1 89 chain 33376 chr6 170805979 + 65595081 65595479 L1PA5 6144 + 5747 6144 39193 64 2 1 332 chain 124986 chr6 170805979 + 65627345 65628867 LTR12C 1709 + 0 1709 14706 99 5 6 126 17 0 31 0 1 225 0 1 202 0 159 121 0 41 99 1 0 5 3 1 106 1 5 481 chain 15032 chr6 170805979 + 65648359 65648694 L1PB1 5432 + 5117 5421 62223 21 1 0 8 1 0 6 11 7 9 2 0 52 2 1 10 17 16 34 1 0 20 3 0 12 34 22 11 2 0 24 1 0 21 1 0 13 1 0 17 chain 5067 chr6 170805979 + 65683363 65683476 MER67D 511 + 392 487 85324 44 1 3 20 33 13 15 chain 175443 chr6 170805979 + 65687528 65689526 L1PA4 6152 + 4084 6143 10804 36 0 1 468 0 1 45 2 1 451 0 14 55 0 46 941 chain 8471 chr6 170805979 + 65702816 65702957 MLT2D 439 + 2 135 73747 40 16 9 38 1 0 46 chain 22463 chr6 170805979 + 65717648 65717992 THE1B 368 + 0 368 53170 44 5 20 108 1 0 24 3 0 5 36 49 118 chain 72116 chr6 170805979 + 65752988 65753796 L1PA4 6152 + 4371 5181 23508 267 0 5 188 3 0 350 chain 63115 chr6 170805979 + 65754791 65755538 L1PA7 6471 + 5702 6450 25599 606 1 2 140 chain 91347 chr6 170805979 + 65779368 65780363 L1PA2 6032 + 5033 6029 19443 5 0 1 990 chain 210563 chr6 170805979 + 65865236 65868002 L1PA6 6164 + 3397 6162 9333 163 7 0 496 9 10 40 0 2 694 14 13 972 10 12 6 2 0 345 0 4 8 chain 42316 chr6 170805979 + 65885477 65885931 L1PA2 6032 + 5578 6032 33177 454 chain 528456 chr6 170805979 + 65971283 65977148 L1PA3long 6157 + 283 6157 1895 1572 0 1 676 1 9 458 0 1 1936 1 0 1221 chain 6259 chr6 170805979 + 66161503 66161646 L1MCb 1641 + 1136 1291 80130 31 0 5 14 50 57 48 chain 497748 chr6 170805979 + 66166509 66172943 L1PA6 6164 + 0 6159 3214 231 0 1 139 29 36 94 10 9 172 1 0 75 11 12 1464 0 7 84 2 1 8 0 1 7 0 19 20 8 10 178 0 1 203 0 3 56 0 1 359 0 1 83 0 1 188 4 8 146 343 0 71 5 9 137 4 15 1468 0 4 432 0 3 402 chain 27227 chr6 170805979 + 66170101 66170403 SVA_D 2077 + 1762 2064 45934 302 chain 4431 chr6 170805979 + 66248084 66248135 L1PA6 6164 + 3224 3275 88718 51 chain 8888 chr6 170805979 + 66248135 66248233 L1PA6 6164 + 3280 3378 72799 98 chain 231594 chr6 170805979 + 66248237 66250989 L1PA6 6164 + 3381 6162 8707 934 1 0 143 0 12 259 0 1 584 0 1 192 0 2 317 0 1 164 2 15 156 chain 41936 chr6 170805979 + 66258644 66259182 LTR10F 562 + 0 562 33402 73 5 1 30 0 2 48 0 28 49 3 0 261 0 1 69 chain 203664 chr6 170805979 + 66261284 66264287 HERVIP10FH-int 2884 + 148 2866 9584 60 1 0 125 1 0 4 0 1 61 3 0 23 0 1 204 1 0 243 6 7 56 0 2 257 0 1 15 2 0 173 4 1 6 3 0 11 1 0 7 1 0 63 6 1 129 9 1 13 5 2 12 45 25 14 20 3 43 22 10 39 10 0 3 1 0 20 3 2 255 10 9 197 4 3 24 1 0 250 0 1 114 1 0 65 2 1 51 1 0 16 1 0 13 12 6 33 206 22 9 2 0 11 chain 38671 chr6 170805979 + 66264357 66264857 LTR10F 562 + 0 560 35588 90 0 1 16 1 29 65 0 31 328 chain 3808 chr6 170805979 + 66273499 66273544 MIR 256 + 67 112 92779 45 chain 8337 chr6 170805979 + 66359504 66359596 MER9a3 513 + 401 493 74067 92 chain 43864 chr6 170805979 + 66360702 66361202 MER9a3 513 + 14 513 32212 244 1 0 255 chain 164258 chr6 170805979 + 66366729 66368562 L1PA4 6152 + 4307 6140 11469 1833 chain 256936 chr6 170805979 + 66424653 66427630 L1PA5 6144 + 3150 6137 8062 101 0 5 425 0 3 622 0 1 663 0 1 92 1 0 231 1 0 18 1 2 356 0 1 466 chain 297085 chr6 170805979 + 66445473 66449829 L1PA8 5853 + 1625 5853 6919 29 5 15 190 5 6 18 1 3 120 1 2 15 46 19 287 8 9 172 0 1 370 2 1 25 5 1 56 0 7 190 14 8 120 1 0 28 1 3 62 35 9 244 4 1 222 0 1 179 0 223 79 11 10 476 0 2 85 10 12 47 6 7 36 1 0 78 0 1 125 0 1 176 1 0 128 307 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66776363 66776757 L1PREC2 3366 + 2594 2963 59330 117 1 0 41 58 55 43 1 0 3 3 0 14 29 21 12 17 12 10 2 0 25 0 1 4 3 0 11 chain 4134 chr6 170805979 + 66780849 66780895 L1PA7 6471 + 6410 6456 90549 46 chain 125159 chr6 170805979 + 66812768 66814172 L1PA4 6152 + 4744 6152 14675 260 0 1 158 0 3 986 chain 207350 chr6 170805979 + 66842028 66844338 L1PA3long 6157 + 2316 4633 9447 381 2 0 302 0 1 23 0 8 1602 chain 134455 chr6 170805979 + 66949034 66950638 LTR12C 1709 + 0 1709 13600 263 0 1 344 0 1 228 1 0 275 1 0 5 3 1 106 0 4 175 0 103 203 chain 89808 chr6 170805979 + 66959214 66960256 L1PA5 6144 + 4719 5774 19719 556 0 4 8 2 0 28 0 11 448 chain 54020 chr6 170805979 + 66991082 66991769 LTR12_ 688 + 0 688 28220 90 26 1 30 0 25 226 0 1 315 chain 3530 chr6 170805979 + 67031862 67031909 LTR12D 1347 + 1049 1095 95019 33 1 0 13 chain 538456 chr6 170805979 + 67095414 67101549 L1PA4 6152 + 2 6152 1429 311 0 3 630 0 4 89 0 1 204 1 0 454 3 0 1473 1 0 38 1 0 305 1 2 406 0 10 6 0 1 2064 0 1 148 chain 29457 chr6 170805979 + 67193672 67194039 L1PA7 6471 + 6104 6467 42657 32 0 1 324 5 0 6 chain 116021 chr6 170805979 + 67216215 67217522 L1HS 6032 + 1784 3095 16232 785 1 0 3 0 5 518 chain 71007 chr6 170805979 + 67283517 67284534 L1PA8 5853 + 4829 5853 23757 103 0 1 4 1 5 62 7 5 41 0 1 161 9 15 104 0 1 231 1 0 42 6 3 63 2 0 5 17 20 4 0 1 39 2 1 19 1 0 93 chain 108436 chr6 170805979 + 67288639 67289892 L1PA5 6144 + 4059 5340 17261 1026 0 28 181 1 0 7 0 1 38 chain 27843 chr6 170805979 + 67307923 67308268 L1PA7 6471 + 6126 6469 45117 74 0 1 256 4 1 11 chain 42688 chr6 170805979 + 67330046 67330613 MLT2A2 560 + 0 560 32955 78 16 6 110 1 4 362 chain 6968 chr6 170805979 + 67405254 67405337 LTR8 732 + 643 726 77715 83 chain 4244 chr6 170805979 + 67435327 67435378 MSTD 398 + 319 370 89854 51 chain 131016 chr6 170805979 + 67461619 67463244 L1PA7 6471 + 4826 6469 13926 667 0 1 127 1 0 77 0 2 84 0 14 177 14 14 467 0 2 11 chain 170936 chr6 170805979 + 67469113 67471077 L1PA5 6144 + 4174 6137 11055 779 10 4 429 0 3 444 0 1 233 0 1 69 chain 39558 chr6 170805979 + 67480884 67481317 L1PA4 6152 + 5718 6151 34984 433 chain 203297 chr6 170805979 + 67486480 67489108 L1PA5 6144 + 3510 6132 9598 196 1 0 1238 8 1 479 0 1 188 4 4 377 0 1 137 chain 82515 chr6 170805979 + 67514693 67520382 L1PA7 6471 + 5368 6461 21117 246 2 0 514 4588 0 253 6 0 80 chain 15929 chr6 170805979 + 67515463 67515690 L1PA7 6471 + 6137 6361 61117 143 9 7 20 18 17 37 chain 22142 chr6 170805979 + 67531969 67532229 L1PA7 6471 + 5870 6131 53640 17 0 1 243 chain 28081 chr6 170805979 + 67532230 67532570 L1PA7 6471 + 6131 6469 44743 327 2 0 11 chain 28819 chr6 170805979 + 67589802 67590206 MLT2A1 477 + 0 403 43596 44 4 6 88 1 2 29 1 5 219 8 0 10 chain 65143 chr6 170805979 + 67614925 67615711 L1PA7 6471 + 4032 4829 25151 102 0 5 284 2 0 246 0 8 152 chain 89404 chr6 170805979 + 67685098 67686066 L1PA3long 6157 + 5188 6157 19774 56 0 1 912 chain 7748 chr6 170805979 + 67723689 67723778 LTR12C 1709 + 979 1068 75492 89 chain 59228 chr6 170805979 + 67767182 67767917 L1PA7 6471 + 5721 6457 26597 126 0 5 386 4 12 12 12 0 195 chain 10011 chr6 170805979 + 67777124 67777253 MER85 139 + 0 139 70401 90 0 10 39 chain 139059 chr6 170805979 + 67785774 67787323 L1PA3long 6157 + 4614 6157 13180 1459 6 0 84 chain 11930 chr6 170805979 + 67796914 67797199 L1PB1 5432 + 5168 5427 66947 52 3 2 9 27 26 23 1 0 16 24 12 18 3 1 5 1 0 14 2 0 24 1 0 22 2 1 11 1 0 12 1 0 6 2 0 5 chain 51498 chr6 170805979 + 67821720 67822513 LTR12D 1347 + 405 1347 29042 32 0 150 105 114 14 207 12 14 58 0 97 265 chain 5260 chr6 170805979 + 67821887 67821945 LTR12D 1347 + 454 512 84391 58 chain 9149 chr6 170805979 + 67825860 67825979 LTR12C 1709 + 769 928 61238 60 4 44 55 chain 27126 chr6 170805979 + 67825979 67826325 LTR12C 1709 + 650 1037 46087 154 0 1 32 1 0 140 0 41 19 chain 52727 chr6 170805979 + 67866461 67867173 L1PA10 4194 + 3449 4160 28658 248 1 0 4 0 1 184 0 1 98 0 1 93 6 5 5 0 1 15 0 2 5 2 0 4 2 0 34 1 0 10 chain 102366 chr6 170805979 + 67879823 67880939 L1PA2 6032 + 4908 6024 18023 1116 chain 144402 chr6 170805979 + 67892986 67894606 L1PA3long 6157 + 3662 5258 12740 694 1 5 374 31 3 520 chain 24153 chr6 170805979 + 67917651 67918033 L1PA11 4918 + 4152 4508 50570 62 6 0 114 5 0 20 0 1 17 10 4 23 2 1 13 2 0 5 4 0 63 2 0 13 2 1 19 chain 59738 chr6 170805979 + 67919700 67920501 L1PA8A 6298 + 5481 6290 26449 98 5 6 12 1 4 98 0 1 18 5 6 111 4 5 310 1 0 33 0 1 4 1 2 100 chain 36817 chr6 170805979 + 67923642 67924070 L1HS 6032 + 881 1309 36873 428 chain 47060 chr6 170805979 + 67929617 67930224 L1PA7 6471 + 5843 6464 30629 218 0 8 68 9 16 48 0 2 93 2 0 6 1 0 162 chain 165873 chr6 170805979 + 67940788 67942902 L1PA7 6471 + 4330 6465 11340 274 9 10 57 0 4 87 0 1 50 0 4 47 2 1 84 0 1 35 19 16 18 1 0 580 0 4 18 1 0 6 1 6 247 0 1 242 0 3 144 0 2 183 0 1 9 chain 76417 chr6 170805979 + 67950358 67951322 L1PA7 6471 + 2203 3160 22456 214 1 0 103 0 2 40 15 8 137 5 4 449 chain 4548 chr6 170805979 + 67951640 67951688 L1P2 5180 + 2831 2879 88068 48 chain 8971 chr6 170805979 + 67986011 67986113 L1PA2 6032 + 5928 6030 72625 102 chain 9463 chr6 170805979 + 68046564 68046718 L1MA7 2200 + 861 1014 71578 66 16 17 65 2 0 5 chain 36880 chr6 170805979 + 68057738 68058199 L1PA7 6471 + 6010 6468 36828 160 7 0 7 0 7 124 0 1 152 4 0 7 chain 26898 chr6 170805979 + 68141536 68142055 LTR3A 482 + 0 482 46410 14 19 16 43 37 0 146 48 39 8 2 0 39 2 3 62 0 7 6 6 0 37 11 23 39 chain 102333 chr6 170805979 + 68208184 68209329 L1PA4 6152 + 5001 6146 18030 1145 chain 39501 chr6 170805979 + 68236637 68237080 L1PA3long 6157 + 5713 6157 35012 110 0 1 333 chain 3435 chr6 170805979 + 68262201 68262239 MADE1 96 + 8 46 95775 38 chain 527865 chr6 170805979 + 68283878 68290045 L1PA3long 6157 + 4 6148 1924 59 7 0 515 0 1 131 0 7 1646 30 0 18 0 1 1230 0 1 1031 0 1 885 0 2 475 2 0 5 1 0 4 8 12 120 chain 20629 chr6 170805979 + 68361311 68361660 THE1D 372 + 0 347 55597 175 1 0 10 67 64 12 0 2 12 0 1 64 1 0 7 chain 64914 chr6 170805979 + 68385132 68386009 MER11A 1151 + 237 1151 25213 52 8 5 38 0 2 199 3 5 22 1 0 113 9 12 5 1 0 55 0 4 56 1 0 8 1 0 5 7 41 223 6 5 64 chain 83419 chr6 170805979 + 68432308 68433197 L1HS 6032 + 5143 6032 20927 889 chain 37768 chr6 170805979 + 68437087 68437595 MLT2A2 560 + 0 518 36231 182 2 1 220 1 12 63 6 4 5 0 2 29 chain 78127 chr6 170805979 + 68463895 68464766 L1PA4 6152 + 2929 3800 22065 871 chain 43416 chr6 170805979 + 68478107 68478577 L1PA2 6032 + 5561 6031 32494 470 chain 47183 chr6 170805979 + 68504128 68504890 L1PB1 5432 + 4686 5420 30577 115 1 0 4 0 4 294 7 6 5 1 0 24 1 2 6 1 0 10 17 11 53 2 1 15 1 0 32 1 0 12 1 0 11 19 6 30 15 14 5 2 0 24 1 0 21 1 0 13 1 0 16 chain 13268 chr6 170805979 + 68509322 68509520 L1PB1 5432 + 4469 4667 64683 27 6 4 129 7 9 29 chain 16653 chr6 170805979 + 68513850 68514144 L1P3 4156 + 3854 4138 60209 48 39 40 58 2 0 44 7 1 62 2 0 9 2 1 21 chain 76890 chr6 170805979 + 68533252 68534356 LTR12C 1709 + 0 1709 22348 256 10 11 24 4 5 42 7 50 76 3 0 5 17 19 230 8 102 17 33 393 209 0 101 78 23 29 62 chain 3203 chr6 170805979 + 68536352 68536391 L1PREC2 3366 + 1752 1792 97869 18 0 1 21 chain 199811 chr6 170805979 + 68537621 68553148 L1PA7 6471 + 3766 6465 9723 25 0 1 43 0 2 238 1 2 291 0 1 32 0 4 111 3 0 35 0 1 235 0 3 159 1 0 144 12836 0 195 0 1 258 0 1 74 0 2 25 0 1 307 5 3 15 1 0 345 1 2 136 4 0 7 chain 4700 chr6 170805979 + 68600254 68600309 MLT2A2 560 + 0 55 87276 55 chain 54729 chr6 170805979 + 68602429 68603037 L1PA4 6152 + 3494 4113 27964 192 0 11 416 chain 393094 chr6 170805979 + 68603529 68609285 HERVL-int 5654 + 0 5648 5263 109 2 1 345 6 1 194 2 0 225 707 574 245 2 1 24 0 1 83 1 0 20 6 7 29 0 4 152 3 4 71 1 2 660 0 1 462 1 0 147 0 8 397 12 24 396 0 1 26 10 0 596 0 1 414 10 16 29 8 11 124 8 10 96 1 2 64 0 3 68 chain 49674 chr6 170805979 + 68629010 68629562 L1PA3long 6157 + 5603 6157 29693 547 0 2 5 chain 25728 chr6 170805979 + 68700690 68700973 L1PA5 6144 + 5853 6136 48126 283 chain 4139 chr6 170805979 + 68706558 68706605 MIR 256 + 54 101 90511 47 chain 56710 chr6 170805979 + 68720989 68721627 L1PA5 6144 + 5497 6135 27356 638 chain 17888 chr6 170805979 + 68722242 68722483 L1PA7 6471 + 6227 6464 58773 80 7 0 5 6 10 125 1 0 17 chain 53575 chr6 170805979 + 68744247 68744895 L1PA7 6471 + 5819 6465 28368 29 0 1 610 3 0 6 chain 7813 chr6 170805979 + 68749311 68749408 MLT2A1 477 + 305 398 75337 80 4 0 13 chain 199377 chr6 170805979 + 68767294 68769685 L1PA7 6471 + 4062 6457 9735 469 0 1 174 0 1 123 1 0 317 0 1 56 1 0 420 3 6 73 1 0 435 0 1 318 chain 55652 chr6 170805979 + 68790210 68790914 L1P1 4361 + 378 1106 27683 14 0 1 56 18 12 13 8 38 62 10 9 523 chain 18273 chr6 170805979 + 68798468 68798680 L1PA7 6471 + 6245 6457 58391 212 chain 27589 chr6 170805979 + 68812999 68813353 THE1A 353 + 0 353 45466 110 1 0 243 chain 45380 chr6 170805979 + 68814635 68815152 L1P1 4361 + 3631 4147 31373 399 1 0 117 chain 3823 chr6 170805979 + 68845296 68845348 MLT1C 463 + 219 268 92697 5 3 0 44 chain 123241 chr6 170805979 + 68845820 68847384 THE1A-int 1579 + 0 1579 14985 471 0 4 23 1 0 89 1 3 33 0 1 293 1 2 158 0 7 184 16 17 294 chain 25002 chr6 170805979 + 68847388 68847738 THE1A 353 + 4 353 49273 99 11 10 84 0 2 6 2 0 29 6 5 52 0 1 61 chain 10877 chr6 170805979 + 68883114 68883787 LTR12D 1347 + 615 1153 68731 17 2 43 19 111 17 60 277 231 18 19 16 13 4 3 30 1 0 24 49 19 8 1 0 20 chain 161813 chr6 170805979 + 68912761 68914683 L1P1 4361 + 185 2120 11622 305 0 17 67 1 0 63 18 20 35 7 0 165 0 2 1261 chain 16650 chr6 170805979 + 69011255 69011464 L1PA16 3655 + 3369 3578 60214 209 chain 66007 chr6 170805979 + 69030013 69030769 L1PA7 6471 + 5709 6462 24957 399 1 0 205 1 0 20 1 0 129 chain 66146 chr6 170805979 + 69114814 69115600 L1PA7 6471 + 5679 6464 24921 625 13 12 148 chain 21869 chr6 170805979 + 69133417 69133678 L1P3 4156 + 3754 4015 54016 261 chain 13455 chr6 170805979 + 69140355 69140802 L1MA3 4352 + 3950 4352 64381 134 172 136 40 58 53 13 8 4 22 chain 8505 chr6 170805979 + 69262665 69262819 MER44A 345 + 90 242 73668 11 5 1 13 1 0 38 11 13 5 2 0 10 0 3 58 chain 168615 chr6 170805979 + 69345298 69347358 L1PA7 6471 + 4005 6461 11174 183 3 0 544 0 10 129 7 15 254 8 390 87 1 4 339 1 0 25 9 5 146 0 1 324 chain 43121 chr6 170805979 + 69367682 69368157 L1PA2 6032 + 5556 6029 32701 464 2 0 9 chain 80839 chr6 170805979 + 69412719 69413617 L1PA3long 6157 + 5258 6157 21465 843 0 1 55 chain 146186 chr6 170805979 + 69414393 69416526 L1PB1 5432 + 3279 5376 12600 374 8 9 70 1 0 54 1 0 425 0 1 210 9 10 176 15 13 110 0 1 72 1 0 8 0 2 10 0 12 87 10 11 169 0 3 12 23 0 20 1 0 4 3 2 12 26 20 44 2 1 15 1 0 43 6 5 12 2 0 6 24 13 11 2 0 6 1 0 14 2 0 24 1 0 6 chain 52360 chr6 170805979 + 69451661 69452359 LTR30 714 + 11 713 28770 204 23 29 96 3 0 109 8 9 255 chain 19133 chr6 170805979 + 69454523 69454865 L1PA15 4387 + 4025 4352 57415 30 7 11 38 2 1 17 1 0 6 1 0 55 1 0 24 4 0 9 2 1 48 8 5 44 3 1 14 5 0 23 chain 22190 chr6 170805979 + 69467958 69473531 LTR12C 1709 + 652 1697 53581 41 41 0 125 5101 497 97 6 7 34 10 127 46 1 0 71 chain 537216 chr6 170805979 + 69480207 69486343 L1PA4 6152 + 2 6143 1498 534 4 0 913 0 1 387 3 8 691 3 0 87 11 17 3503 chain 2826 chr6 170805979 + 69488540 69488572 Charlie4a 502 + 347 379 101434 32 chain 415772 chr6 170805979 + 69495362 69500000 L1HS 6032 + 0 4647 4943 697 0 7 268 0 1 1040 0 1 2633 chain 125380 chr6 170805979 + 69500000 69501385 L1PA2 6032 + 4647 6032 14648 630 2 0 129 0 2 624 chain 551942 chr6 170805979 + 69515150 69521169 L1PA2 6032 + 12 6029 610 6007 2 0 10 chain 30579 chr6 170805979 + 69556928 69557261 L1PA2 6032 + 5681 6014 41491 333 chain 530015 chr6 170805979 + 69560167 69566640 L1PA7 6471 + 0 6466 1822 168 5 26 216 24 0 537 1 0 31 5 16 884 0 2 385 1 0 367 6 0 376 5 4 178 0 4 290 5 2 81 0 1 364 5 7 726 0 4 183 0 1 72 1 2 28 1 0 6 0 1 140 22 0 256 0 3 256 8 7 307 0 1 127 0 1 6 12 13 58 2 1 328 chain 40200 chr6 170805979 + 69570862 69571419 MLT2A2 560 + 0 560 34520 168 43 42 91 0 2 13 0 1 176 1 2 65 chain 14272 chr6 170805979 + 69607051 69607260 L1PA8 5853 + 5647 5853 63235 26 7 6 63 1 0 18 2 1 92 chain 3607 chr6 170805979 + 69648580 69648665 L2a 937 + 292 383 94359 35 33 39 17 chain 21506 chr6 170805979 + 69651766 69652254 MER87B 500 + 0 480 54503 137 6 7 18 7 8 72 29 29 17 8 9 11 61 51 17 41 40 64 chain 48930 chr6 170805979 + 69658076 69658788 L1PA14 3548 + 91 788 29973 57 8 0 69 1 0 20 2 1 30 11 9 20 7 5 152 7 8 199 6 1 53 1 4 69 chain 4557 chr6 170805979 + 69671350 69671541 Tigger4a 237 + 162 237 88035 14 123 0 11 0 7 43 chain 5967 chr6 170805979 + 69724497 69724574 L1MA2 4263 - 2137 2213 81201 25 1 0 51 chain 4663 chr6 170805979 + 69731244 69731315 L1MA4 2864 + 2740 2809 87463 20 8 6 43 chain 69794 chr6 170805979 + 69754718 69755591 L1PA8 5853 + 4969 5847 24044 38 0 2 34 0 4 68 0 1 53 5 11 384 1 0 29 1 0 14 3 1 70 2 1 9 1 0 56 1 0 16 1 0 87 chain 3247 chr6 170805979 + 69763411 69763445 MLT1A-int 1186 + 494 528 97503 34 chain 25976 chr6 170805979 + 69797399 69797820 LTR7B 505 + 0 497 47754 90 0 3 14 0 11 57 15 77 26 0 2 44 46 45 72 14 13 43 chain 4115 chr6 170805979 + 69798493 69798559 LTR62 707 + 0 67 90677 45 6 7 15 chain 44183 chr6 170805979 + 69889431 69890176 LTR12D 1347 + 405 1347 32022 14 20 19 64 25 0 34 17 25 10 0 37 64 25 0 21 20 25 206 0 200 90 7 15 103 10 0 15 chain 55837 chr6 170805979 + 69893451 69894190 MER4E 760 + 0 753 27618 22 0 2 127 22 25 78 5 7 82 0 3 12 0 17 153 12 0 82 1 0 143 chain 58410 chr6 170805979 + 69966137 69966787 SVA_B 1603 + 872 1603 26835 36 0 82 284 0 1 322 2 0 6 chain 12072 chr6 170805979 + 69989469 69989668 MER30 238 + 0 238 66713 11 1 0 4 0 1 6 7 25 34 13 36 6 2 0 115 chain 566102 chr6 170805979 + 70010347 70016379 L1HS 6032 + 0 6032 61 74 0 1 5326 1 0 631 chain 319457 chr6 170805979 + 70062397 70065978 L1PA5 6144 + 1896 5513 6416 1355 0 5 571 9 26 446 0 4 1175 0 10 25 chain 83140 chr6 170805979 + 70123041 70123969 L1PA3long 6157 + 5230 6156 20995 724 3 0 157 0 1 44 chain 6919 chr6 170805979 + 70123985 70124085 L1MA4 2864 + 2471 2571 77885 25 4 3 16 0 1 55 chain 13311 chr6 170805979 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6024 11118 1841 chain 25198 chr6 170805979 + 70779806 70780110 Charlie3 2679 + 240 544 48950 304 chain 12557 chr6 170805979 + 70782519 70782668 MLT2A1 477 + 212 361 65885 149 chain 435902 chr6 170805979 + 70782830 70787802 L1PA4 6152 + 6 5493 4647 90 0 525 230 17 0 2202 1 2 61 0 1 1052 1 0 324 0 4 83 7 8 287 2 3 615 chain 9419 chr6 170805979 + 70865444 70865581 MER2 342 + 141 293 71654 40 0 5 54 7 17 36 chain 69839 chr6 170805979 + 70869796 70870552 L1PA4 6152 + 5396 6152 24034 756 chain 4573 chr6 170805979 + 70901374 70901428 L1MC3 1789 + 1143 1197 87952 54 chain 451840 chr6 170805979 + 70925175 70931342 L1PA5 6144 + 0 6143 4340 42 8 3 91 9 23 428 0 2 121 3 4 231 28 0 131 0 3 90 9 0 1144 3 4 73 1 0 146 14 1 22 0 4 213 0 2 386 5 2 68 0 1 46 1 2 217 15 15 51 0 571 13 583 0 161 0 1 29 0 4 142 0 2 267 1 2 591 1 8 145 0 1 54 0 1 462 0 1 122 chain 48734 chr6 170805979 + 70928792 70929351 L1PA5 6144 + 5566 6138 30039 406 10 22 93 0 1 50 chain 385339 chr6 170805979 + 70935659 70939904 L1PA3long 6157 + 1899 6157 5392 1391 0 2 1712 1 6 390 0 3 503 0 1 49 0 2 199 chain 549552 chr6 170805979 + 70944092 70950214 L1PA3long 6157 + 6 6157 779 335 8 22 32 0 2 20 11 0 1101 0 1 676 15 7 1089 0 1 491 7 8 971 0 22 220 1 6 296 0 1 56 0 1 793 chain 22278 chr6 170805979 + 70972582 70972920 THE1B 368 + 0 353 53437 44 0 15 113 28 27 122 6 7 25 chain 512734 chr6 170805979 + 70974203 70980295 L1PA6 6164 + 29 6160 2633 387 0 1 37 7 11 115 2 17 1615 0 2 117 0 3 476 4 5 356 1 0 19 0 2 1315 0 4 83 7 8 363 0 1 68 2 9 969 1 2 140 2 0 6 chain 12697 chr6 170805979 + 70986895 70987099 THE1B 368 + 155 368 65621 14 1 0 29 35 45 125 chain 177360 chr6 170805979 + 70997696 71000000 L1P3 4156 + 0 2312 10709 187 71 78 54 1 0 84 1 0 6 2 0 61 1 0 104 3 0 5 30 4 155 11 16 286 0 5 204 0 19 392 0 1 145 0 1 37 1 4 131 0 1 332 chain 339667 chr6 170805979 + 71000000 71004154 L1PA7 6471 + 2315 6469 6079 326 3 0 589 11 14 379 1 0 274 4 0 21 5 6 748 0 2 895 1 0 38 7 10 131 0 1 629 16 0 11 0 17 53 2 0 10 chain 66606 chr6 170805979 + 71128959 71129680 L1PA2 6032 + 4449 5170 24794 721 chain 482345 chr6 170805979 + 71141089 71146364 L1PA2 6032 + 756 6028 3583 1068 1 0 1357 0 1 2832 3 0 14 chain 6654 chr6 170805979 + 71182611 71182689 U6 107 + 0 78 78797 78 chain 13836 chr6 170805979 + 71243672 71244012 L1PB1 5432 + 5114 5423 63818 20 1 0 8 3 2 14 5 1 9 2 0 52 2 1 9 8 7 44 1 0 15 23 12 18 3 1 5 1 0 13 2 0 25 11 10 12 4 3 9 1 0 14 1 0 5 chain 509537 chr6 170805979 + 71270518 71276250 L1PA4 6152 + 11 5736 2793 235 1 2 207 13 7 118 2 1 4796 1 0 359 chain 163822 chr6 170805979 + 71317700 71319530 L1PA3long 6157 + 4304 6147 11496 56 0 4 410 4 5 959 2 0 157 0 10 242 chain 85848 chr6 170805979 + 71336006 71337205 L1PA11 4918 + 3384 4567 20481 253 1 0 310 9 6 114 0 1 146 0 3 95 0 1 21 0 3 58 1 0 12 2 0 65 4 2 14 4 3 13 54 41 9 1 0 13 chain 27700 chr6 170805979 + 71366495 71366929 LOR1b 457 + 0 428 45317 29 0 9 26 18 19 64 13 6 74 9 6 36 11 5 154 chain 404547 chr6 170805979 + 71436650 71442796 L1PB1 5432 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176 chain 27993 chr6 170805979 + 71624237 71624613 THE1C 375 + 0 375 44876 15 2 0 32 1 2 135 1 2 163 1 0 26 chain 28971 chr6 170805979 + 71660561 71660937 LOR1b 457 + 71 450 43375 73 1 0 289 2 6 11 chain 26341 chr6 170805979 + 71662927 71663305 THE1B 368 + 0 357 47215 172 2 1 13 12 6 126 17 3 36 chain 103265 chr6 170805979 + 71685983 71687370 LTR12C 1709 + 0 1708 17924 111 0 5 146 2 1 4 0 1 10 19 24 36 0 43 77 9 11 181 0 278 184 1 0 5 3 1 29 1 0 77 0 4 260 13 4 61 6 5 55 13 12 24 1 0 59 chain 50044 chr6 170805979 + 71785313 71785980 LTR12_ 688 + 0 673 29548 175 24 0 365 5 2 10 1 34 87 chain 50637 chr6 170805979 + 71791796 71792437 LTR12_ 688 + 0 665 29332 127 1 26 14 1 0 267 4 0 6 10 14 211 chain 57930 chr6 170805979 + 71859133 71859812 L1PA6 6164 + 5202 5886 26987 91 1 0 22 0 5 511 0 1 54 chain 525998 chr6 170805979 + 72006353 72012481 L1PA4 6152 + 10 6143 2000 103 0 1 11 17 3 14 24 38 23 0 4 1232 0 1 1846 1 0 230 0 1 166 5 0 127 0 1 511 0 2 1677 3 0 5 1 4 28 0 1 104 chain 51161 chr6 170805979 + 72089623 72090179 L1PA2 6032 + 5473 6028 29176 223 1 0 332 chain 5176 chr6 170805979 + 72301447 72301587 MER2 342 + 13 150 84788 14 59 57 25 1 0 41 chain 38794 chr6 170805979 + 72327979 72328456 L1PA7 6471 + 5983 6469 35505 152 7 9 125 0 8 91 1 0 101 chain 25799 chr6 170805979 + 72332407 72332684 L1PA3long 6157 + 5869 6146 48015 277 chain 28339 chr6 170805979 + 72405122 72405579 MER1A 529 + 0 520 44356 80 9 65 20 3 4 166 1 2 55 1 4 47 44 0 8 0 46 23 chain 555995 chr6 170805979 + 72469432 72475584 L1PA3long 6157 + 0 6157 361 1813 0 1 277 0 1 92 0 2 1283 1 0 475 0 1 1361 0 1 850 chain 48905 chr6 170805979 + 72492725 72493269 L1PA4 6152 + 4643 5187 29977 544 chain 557148 chr6 170805979 + 72570139 72576167 L1PA2 6032 + 2 6032 292 1109 0 2 4919 chain 42794 chr6 170805979 + 72633384 72634059 L1PA16 3655 + 2083 2767 32892 126 5 6 109 6 8 7 0 5 12 7 7 73 13 16 13 41 40 157 15 14 91 chain 19656 chr6 170805979 + 72663031 72663286 L1PA7 6471 + 6204 6465 56849 156 1 9 83 0 1 6 3 0 6 chain 47719 chr6 170805979 + 72679204 72679733 L1PA3long 6157 + 5628 6157 30390 529 chain 43767 chr6 170805979 + 72773068 72773595 L1PA7 6471 + 5910 6453 32275 51 14 1 238 0 29 224 chain 158684 chr6 170805979 + 72829929 72831740 L1PA5 6144 + 4328 6143 11832 690 1 0 150 1 2 127 0 4 82 1 0 43 0 3 703 3 1 10 chain 44623 chr6 170805979 + 72843622 72844173 L1PA7 6471 + 5888 6470 31778 127 0 7 106 0 1 27 0 1 43 0 29 194 8 1 46 chain 19604 chr6 170805979 + 72852308 72852602 L1MA4 2864 + 2395 2683 56902 76 12 10 16 3 2 21 1 2 114 2 1 38 3 0 8 chain 128080 chr6 170805979 + 72970547 72971986 L1PA5 6144 + 4682 6132 14269 187 1 0 428 0 4 456 0 8 367 chain 50844 chr6 170805979 + 73058423 73059275 L1PA15 4387 + 3549 4358 29257 54 2 0 22 6 9 36 18 0 143 9 7 7 5 0 47 0 1 15 2 0 41 2 1 172 2 1 20 6 5 48 8 7 22 4 0 9 1 0 40 20 17 32 1 2 6 2 0 16 5 0 29 chain 67200 chr6 170805979 + 73090673 73091477 L1PA7 6471 + 5661 6465 24647 804 chain 87693 chr6 170805979 + 73099081 73100375 L1MA3 4352 + 22 1280 20100 15 1 0 44 1 0 16 3 0 52 7 6 20 5 0 113 38 19 465 2 0 13 9 6 35 10 0 38 1 0 11 1 0 182 2 0 23 2 1 27 5 4 46 16 25 40 0 3 44 0 3 7 chain 33577 chr6 170805979 + 73103257 73103646 L1PA5 6144 + 5756 6143 39021 379 2 0 8 chain 9591 chr6 170805979 + 73231665 73231777 AluSc5 308 + 195 307 71279 112 chain 160242 chr6 170805979 + 73312781 73314582 L1PA5 6144 + 4339 6144 11737 8 0 4 1540 1 0 23 0 2 66 1 0 162 chain 6268 chr6 170805979 + 73316180 73316292 MER3 215 + 57 164 80096 52 15 16 27 6 0 12 chain 7529 chr6 170805979 + 73319269 73319402 L1MC3 1789 + 810 933 76052 70 31 21 32 chain 21085 chr6 170805979 + 73389620 73389856 L1PA4 6152 + 5917 6151 55022 93 1 0 136 1 0 5 chain 29678 chr6 170805979 + 73446443 73446764 AluYb8 318 + 0 318 42393 132 3 0 186 chain 72177 chr6 170805979 + 73459394 73460248 MER11D 897 + 0 897 23490 14 0 1 159 0 17 311 1 3 88 1 24 280 chain 5214 chr6 170805979 + 73505850 73505924 L1MB3 1562 + 1441 1513 84611 9 1 0 18 1 0 45 chain 3773 chr6 170805979 + 73534820 73534875 L1ME1 1623 + 1242 1296 93039 22 2 1 31 chain 83189 chr6 170805979 + 73575569 73576651 MER11B 1079 + 0 1079 20986 195 1 0 54 0 1 14 3 0 50 0 4 46 0 1 195 40 39 69 1 0 65 0 1 38 8 2 279 5 6 15 0 1 4 chain 3143 chr6 170805979 + 73581733 73581767 MER66C 541 + 375 409 98443 34 chain 128686 chr6 170805979 + 73600951 73602449 SVA_D 2077 + 443 2073 14196 435 0 83 73 22 24 161 51 0 84 0 98 672 chain 3515 chr6 170805979 + 73601642 73601693 SVA_D 2077 + 1041 1092 37643 51 chain 25841 chr6 170805979 + 73647794 73648090 AluSq10 312 + 9 304 47953 72 1 0 223 chain 5780 chr6 170805979 + 73688400 73688681 MER21C 908 + 86 332 82010 42 59 13 32 130 141 18 chain 83247 chr6 170805979 + 73709604 73710520 L1PA5 6144 + 3644 4560 20975 916 chain 68576 chr6 170805979 + 73804880 73806522 L1PA5 6144 + 5364 6144 24316 248 862 0 532 chain 17268 chr6 170805979 + 73805135 73805332 LTR5_Hs 974 + 0 198 59499 181 0 1 16 chain 9526 chr6 170805979 + 73809551 73809666 Tigger4a 237 - 96 211 71422 115 chain 32116 chr6 170805979 + 73820943 73821315 L1PA5 6144 + 5766 6141 40257 93 0 3 279 chain 123850 chr6 170805979 + 73844231 73845762 THE1A-int 1579 + 1 1574 14873 17 0 5 223 0 1 566 0 5 232 13 44 480 chain 25277 chr6 170805979 + 73845767 73846104 THE1A 353 + 0 353 48822 26 0 1 56 1 0 26 12 11 156 0 17 60 chain 104617 chr6 170805979 + 73847135 73848308 L1PA3long 6157 + 4977 6157 17739 329 0 1 57 0 3 775 0 3 12 chain 25786 chr6 170805979 + 73862700 73863046 AluY 311 + 0 304 48036 10 3 0 116 26 0 78 13 0 100 chain 5524 chr6 170805979 + 73903740 73903849 LTR12C 1709 + 650 718 83139 33 41 0 35 chain 2121 chr6 170805979 + 73904202 73904227 LTR12C 1709 + 1494 1519 105704 25 chain 368744 chr6 170805979 + 73904385 73908939 HERV9-int 5642 + 0 4564 5680 61 0 1 225 1 0 9 0 3 496 11 9 303 84 0 16 0 1 249 0 4 382 9 95 638 2 3 767 11 2 355 0 6 356 3 4 14 6 8 127 0 3 5 6 3 132 0 1 286 chain 546114 chr6 170805979 + 73917512 73923667 L1PA3long 6157 + 1 6157 965 5 2 0 800 0 1 412 0 1 47 0 2 170 2 1 519 1 0 367 1 0 1362 2 1 232 0 1 388 0 1 802 0 1 1043 chain 3245 chr6 170805979 + 73962403 73962443 MLT1C 463 + 420 460 97525 40 chain 116993 chr6 170805979 + 73971825 73973299 L1P3 4156 + 2 1497 16057 230 16 30 57 2 1 88 0 1 78 0 1 171 5 10 451 0 1 376 chain 7643 chr6 170805979 + 73977326 73977415 L1PA8 5853 + 5764 5853 75766 89 chain 179837 chr6 170805979 + 74119608 74121632 L1PA5 6144 + 3353 5383 10595 169 2 0 162 0 2 453 1 0 116 0 3 1029 4 8 88 chain 71888 chr6 170805979 + 74150603 74151429 L1PA4 6152 + 5311 6143 23571 436 15 13 292 0 8 83 chain 11183 chr6 170805979 + 74162289 74162535 L1PB1 5432 + 5186 5427 68276 34 2 1 15 1 0 35 30 37 19 2 0 5 1 0 14 2 0 24 1 0 19 17 15 18 2 0 5 chain 25783 chr6 170805979 + 74162560 74162841 L1PA3long 6157 + 5866 6147 48045 281 chain 48753 chr6 170805979 + 74209884 74210416 L1PA2 6032 + 5499 6030 30031 277 1 0 254 chain 93609 chr6 170805979 + 74227829 74228893 L1P1 4361 + 2627 3690 19095 100 2 1 962 chain 125990 chr6 170805979 + 74246644 74248027 L1PA3long 6157 + 3445 4841 14562 657 0 13 726 chain 27157 chr6 170805979 + 74262246 74262555 L1PA5 6144 + 5137 5446 46028 309 chain 14257 chr6 170805979 + 74349453 74349712 MER4B 649 + 0 316 63253 27 22 28 20 5 6 30 2 0 5 0 2 7 0 53 14 3 1 65 2 1 57 chain 53984 chr6 170805979 + 74365207 74365800 L1PA3long 6157 + 5558 6152 28234 490 0 1 103 chain 174497 chr6 170805979 + 74385038 74386980 L1PA3long 6157 + 4212 6157 10868 601 2 1 169 0 1 129 0 1 193 0 2 848 chain 19950 chr6 170805979 + 74393946 74394254 MSTA 426 + 0 405 56459 110 14 38 53 11 64 27 5 25 88 chain 195493 chr6 170805979 + 74400147 74402388 L1PA4 6152 + 2976 5226 9863 1023 3 0 348 0 4 745 0 8 122 chain 142104 chr6 170805979 + 74405643 74407301 L1PA5 6144 + 4477 6144 12924 152 0 5 665 0 4 841 chain 6763 chr6 170805979 + 74422513 74422598 L1MA2 4263 + 5 89 78433 17 1 0 67 chain 8873 chr6 170805979 + 74422861 74422961 L1PA5 6144 + 5194 5294 72828 100 chain 75319 chr6 170805979 + 74422961 74423812 L1PA5 6144 + 5295 6144 22766 840 2 0 9 chain 37316 chr6 170805979 + 74460521 74460965 L1PA7 6471 + 5534 5977 36539 4 0 1 79 1 4 197 5 0 158 chain 36964 chr6 170805979 + 74468148 74468622 LTR2B 499 + 5 499 36762 7 0 1 60 3 0 38 0 19 102 0 3 264 chain 53459 chr6 170805979 + 74469866 74470616 Harlequin-int 5206 + 135 887 28409 14 6 3 68 9 7 61 0 1 16 2 4 49 0 5 36 1 2 50 4 3 109 0 1 58 16 14 251 chain 484303 chr6 170805979 + 74484532 74490832 L1PA3long 6157 + 0 6155 3546 94 0 526 147 9 137 85 0 2 867 0 1 809 0 1 40 0 5 2196 806 0 215 1 0 4 0 1 266 1 0 89 1 0 670 chain 67539 chr6 170805979 + 74488786 74489536 SVA_D 2077 + 1091 2066 24553 102 0 225 648 chain 219180 chr6 170805979 + 74511467 74513901 L1PA2 6032 + 3593 6027 9060 2434 chain 46659 chr6 170805979 + 74516085 74516675 L1PA7 6471 + 4510 5108 30790 42 0 2 114 0 4 157 0 1 124 0 1 41 1 0 16 0 2 5 1 0 89 chain 25631 chr6 170805979 + 74536737 74537062 MLT2A1 477 + 8 333 48267 124 0 1 36 4 1 9 0 1 24 0 1 128 chain 432206 chr6 170805979 + 74537166 74542840 HERVL-int 5654 + 54 5654 4716 191 8 4 344 0 1 111 84 12 107 9 3 111 13 2 25 2 0 5 0 2 30 4 2 103 15 11 681 9 10 263 0 1 4 2 1 533 0 1 144 1 3 231 0 1 18 0 4 415 12 13 50 4 0 7 0 6 299 21 13 49 0 4 97 0 2 304 0 1 491 0 9 197 1 0 21 1 0 427 5 9 40 0 1 72 2 3 111 chain 2219 chr6 170805979 + 74537877 74537900 HERVL-int 5654 + 681 704 105218 23 chain 28585 chr6 170805979 + 74542840 74543244 MLT2A1 477 + 0 405 43982 127 8 9 32 5 2 11 5 6 17 0 2 199 chain 13881 chr6 170805979 + 74560586 74560751 HERVL-int 5654 + 4477 4642 63761 165 chain 14360 chr6 170805979 + 74560752 74560932 HERVL-int 5654 + 4642 4822 63097 180 chain 21291 chr6 170805979 + 74560932 74561212 HERVL-int 5654 + 4838 5119 54780 171 8 9 101 chain 41369 chr6 170805979 + 74561213 74561739 HERVL-int 5654 + 5119 5649 33749 305 1 5 220 chain 28250 chr6 170805979 + 74611677 74612002 L1PA4 6152 + 5834 6152 44483 160 7 0 158 chain 201422 chr6 170805979 + 74626933 74629835 L1PA10 4194 + 127 2972 9666 5 2 0 5 2 0 7 1 0 3 2 0 8 2 0 9 17 11 14 2 0 10 3 0 8 2 0 9 11 7 9 2 0 8 11 9 19 9 7 12 1 0 6 38 13 8 1 0 23 2 0 18 10 8 11 8 6 15 19 0 3 1 0 5 1 0 5 0 1 70 6 5 637 0 2 45 0 1 54 6 7 63 0 5 317 1 0 171 0 1 172 0 4 137 6 7 381 0 14 45 0 1 167 0 3 238 3 0 16 chain 540077 chr6 170805979 + 74660015 74666151 L1PA4 6152 + 6 6146 1337 119 17 3 14 11 25 429 0 1 199 0 4 1155 1 0 1210 1 0 517 1 0 1618 0 1 574 0 1 270 chain 95287 chr6 170805979 + 74681925 74682979 L1PA3long 6157 + 5088 6141 18870 922 2 1 130 chain 106188 chr6 170805979 + 74702188 74703560 L1PA3long 6157 + 4803 6157 17546 105 0 5 751 25 2 491 chain 18404 chr6 170805979 + 74726532 74726737 L1P1 4361 + 2986 3191 58237 205 chain 3195 chr6 170805979 + 74733841 74733899 MER53 195 + 129 189 97935 30 9 11 19 chain 159522 chr6 170805979 + 74789106 74791412 L1P2 5180 + 638 2608 11779 149 0 15 446 1 0 520 6 0 79 326 0 161 0 1 310 18 0 143 6 1 112 0 4 29 chain 86604 chr6 170805979 + 74794575 74795972 L1PB1 5432 + 4101 5427 20299 219 19 22 35 11 3 219 0 6 6 10 4 6 3 0 22 0 1 23 16 18 298 2 1 98 0 3 7 56 22 23 1 0 9 1 0 12 5 1 9 2 0 52 2 1 9 7 6 44 1 0 16 3 0 6 17 7 18 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 27503 chr6 170805979 + 74805264 74805634 L1PA7 6471 + 6101 6468 45579 206 13 11 5 0 3 4 1 0 129 3 0 9 chain 25873 chr6 170805979 + 74831186 74831493 L1PA7 6471 + 6012 6320 47908 219 0 1 88 chain 5704 chr6 170805979 + 74832821 74833039 L1MC3 1789 + 1178 1386 82319 55 125 117 25 2 0 11 chain 122534 chr6 170805979 + 74836023 74837432 L1PA5 6144 + 4250 5677 15109 371 0 1 14 1 0 447 5 10 201 1 0 253 13 25 97 0 2 6 chain 74827 chr6 170805979 + 74861448 74862309 L1PA5 6144 + 5270 6132 22886 731 0 1 130 chain 26599 chr6 170805979 + 74871926 74872268 THE1A 353 + 0 353 46836 167 3 14 172 chain 539177 chr6 170805979 + 74903761 74909912 L1PA4 6152 + 0 6146 1390 254 0 4 169 0 1 152 1 0 440 2 1 55 1 2 166 1 0 395 0 1 624 0 1 417 10 7 44 9 0 26 0 1 435 0 1 128 1 2 356 1 0 2464 chain 7369 chr6 170805979 + 74967206 74967303 Tigger2b_Pri 1066 + 819 923 76482 33 0 3 8 0 4 56 chain 20003 chr6 170805979 + 74994815 74995072 Tigger3a 397 + 140 396 56381 117 1 0 139 chain 53603 chr6 170805979 + 74999398 75000000 L1PA4 6152 + 5542 6144 28360 602 chain 94972 chr6 170805979 + 75000755 75001872 L1PA7 6471 + 5347 6468 18914 274 0 3 398 7 8 438 chain 278020 chr6 170805979 + 75003701 75007000 L1P1 4361 + 1 3296 7488 449 12 6 88 0 1 29 1 0 440 1 0 56 1 2 152 6 7 848 0 1 1216 chain 83827 chr6 170805979 + 75007409 75008361 L1PA3long 6157 + 5202 6155 20840 769 0 1 183 chain 179153 chr6 170805979 + 75008362 75010384 L1PA4 6152 + 3283 5304 10624 1480 7 6 535 chain 74170 chr6 170805979 + 75010384 75011226 L1PA4 6152 + 5308 6150 23042 842 chain 482050 chr6 170805979 + 75012967 75018458 L1PA5 6144 + 642 6137 3586 34 0 3 344 1 0 9 0 1 336 0 1 214 8 5 114 0 1 630 0 1 1580 0 1 82 1 0 1745 0 1 356 0 6 7 6 0 24 chain 137598 chr6 170805979 + 75030856 75032587 L1P2 5180 + 2 1734 13296 147 2 1 43 2 1 53 3 2 266 0 1 47 1 0 224 0 15 403 27 16 84 6 5 278 0 1 145 chain 6378 chr6 170805979 + 75140879 75140963 MER33 330 + 21 101 79749 14 4 0 66 chain 176980 chr6 170805979 + 75161533 75163671 L1PA7 6471 + 4336 6466 10730 338 0 4 113 0 1 148 0 1 165 16 7 241 1 0 264 4 3 838 3 0 7 chain 24535 chr6 170805979 + 75174275 75174570 AluYk4 311 + 0 296 49969 42 1 2 252 chain 4076 chr6 170805979 + 75228938 75228985 L1MA8 2339 + 1477 1524 90914 47 chain 26848 chr6 170805979 + 75248390 75248717 MER4E 760 + 422 760 46476 22 1 0 89 2 1 150 0 13 63 chain 22246 chr6 170805979 + 75248990 75249246 AluSc 308 + 15 290 53481 121 0 19 135 chain 4462 chr6 170805979 + 75268653 75268918 MER21C 908 + 666 803 88547 19 34 25 14 115 0 14 2 0 14 1 0 15 18 17 19 chain 113278 chr6 170805979 + 75324091 75326035 L1PB2 3958 + 2267 3830 16636 217 0 1 5 54 8 282 0 1 19 0 1 123 1 0 123 0 2 216 311 0 14 1 5 23 2 0 37 14 17 13 4 0 64 2 0 13 5 0 39 7 6 44 1 0 6 0 1 44 17 0 26 1 0 62 1 0 74 28 26 51 chain 16492 chr6 170805979 + 75353027 75353215 L1PA5 6144 + 5955 6143 60392 188 chain 26539 chr6 170805979 + 75392662 75393028 THE1B 368 + 0 368 46913 13 2 0 23 0 5 115 0 1 15 12 11 102 9 8 75 chain 89148 chr6 170805979 + 75422727 75423985 HSMAR1 1287 + 5 1251 19830 76 3 6 29 3 9 68 0 2 189 0 3 92 9 10 133 35 5 277 30 33 314 chain 64267 chr6 170805979 + 75448460 75449466 L1PB1 5432 + 4425 5422 25358 188 5 13 168 0 8 36 3 15 86 18 15 97 3 0 52 13 11 16 5 4 10 1 0 12 14 6 5 0 2 51 2 1 9 5 6 45 1 0 15 1 0 4 3 0 13 9 0 10 6 4 5 1 0 14 2 0 46 1 0 12 1 0 18 chain 103326 chr6 170805979 + 75505914 75507562 L1PA11 4918 + 3195 4504 17913 137 331 0 35 1 4 846 10 0 116 0 5 55 2 1 13 2 0 66 2 0 18 1 0 13 chain 25350 chr6 170805979 + 75535883 75536176 AluY 311 + 18 311 48706 293 chain 25643 chr6 170805979 + 75552069 75552337 AluYd8 298 + 20 288 48255 268 chain 6739 chr6 170805979 + 75560714 75560791 L1PA8 5853 + 5776 5853 78516 77 chain 280685 chr6 170805979 + 75569018 75574230 L1PA10 4194 + 197 4104 7404 10 2 0 9 11 7 9 2 0 8 6 5 5 1 0 22 2 0 15 1 0 7 37 12 8 1 0 21 2 0 21 1 0 7 1 0 11 1 0 6 5 0 15 13 0 7 5 3 77 12 10 32 0 3 102 15 17 156 321 35 211 1 0 114 2 1 22 2 0 102 323 7 181 0 1 5 8 9 138 35 37 155 5 1 111 11 1 294 0 4 621 0 19 85 0 1 107 306 0 126 356 0 249 1 4 81 0 1 173 1 0 7 3 4 126 6 8 100 1 5 156 chain 84781 chr6 170805979 + 75583666 75584754 L1PB2 3958 + 1783 2863 20663 455 0 2 241 9 0 147 1 0 235 chain 40334 chr6 170805979 + 75806486 75806985 MER9a2 513 + 0 513 34421 283 1 18 145 4 0 46 5 6 15 chain 44657 chr6 170805979 + 75949131 75949675 MER41A 554 + 0 554 31763 87 4 14 453 chain 4014 chr6 170805979 + 75971920 75971974 LTR37A 408 + 266 320 91353 36 1 0 5 0 1 12 chain 39275 chr6 170805979 + 75980382 75980884 MLT2A2 560 + 19 551 35168 135 6 7 149 0 18 72 7 18 133 chain 59844 chr6 170805979 + 76020707 76021467 MER4E1 777 + 0 759 26416 23 1 0 94 5 1 58 5 4 365 8 13 201 chain 253069 chr6 170805979 + 76026976 76030638 MER61-int 3695 + 0 3341 8154 30 4 0 66 0 2 96 39 0 66 13 12 138 16 2 60 1 0 187 1 0 184 15 20 89 0 2 168 0 5 34 0 4 269 1 3 86 297 6 251 4 5 315 0 1 284 10 0 48 1 0 119 0 3 210 1 0 98 1 0 32 1 0 5 1 0 251 5 6 45 0 19 120 chain 26273 chr6 170805979 + 76035220 76035528 AluSp 311 + 0 311 47314 91 0 3 217 chain 25495 chr6 170805979 + 76069583 76069984 L1PA16 3655 + 3201 3590 48490 90 2 0 65 14 13 45 6 0 17 20 20 126 3 0 13 chain 477269 chr6 170805979 + 76097493 76103437 L1PA7 6471 + 245 6365 3694 163 1 2 439 1 2 453 0 3 111 3 4 331 0 1 540 20 35 151 0 141 15 2 3 119 0 4 74 1 0 360 0 1 6 0 3 27 0 1 135 11 12 90 11 15 43 5 3 17 2 6 93 0 1 175 4 0 5 12 0 173 5 0 654 0 1 9 0 8 145 0 1 95 1 0 147 0 3 266 1 2 142 0 1 27 0 3 118 1 0 294 0 1 446 chain 103460 chr6 170805979 + 76147748 76149387 L1PA6 6164 + 4030 6162 17888 150 1 2 318 324 813 4 1 0 15 1 2 219 1 4 406 5 6 33 12 13 141 2 0 6 chain 68423 chr6 170805979 + 76157560 76158469 MER11A 1151 + 166 1151 24351 64 1 0 64 0 11 27 0 2 225 1 0 52 7 8 126 0 4 65 0 27 20 0 32 99 5 6 87 8 7 54 0 1 4 chain 19563 chr6 170805979 + 76190583 76190831 THE1C-int 1605 + 1344 1596 56943 148 2 1 24 0 5 74 chain 190717 chr6 170805979 + 76192206 76194308 L1PA3long 6157 + 4055 6157 10079 2102 chain 6486 chr6 170805979 + 76200450 76200522 L1PA7 6471 + 4415 4487 79390 72 chain 161489 chr6 170805979 + 76200522 76202489 L1PA7 6471 + 4488 6470 11647 181 0 8 815 0 1 238 0 5 12 0 1 548 14 14 159 chain 28729 chr6 170805979 + 76210379 76210718 L1PA7 6471 + 3893 4232 43746 339 chain 190951 chr6 170805979 + 76210719 76212964 L1PA7 6471 + 4232 6464 10070 584 2 0 1049 11 0 137 0 2 7 2 0 453 chain 49391 chr6 170805979 + 76241560 76242133 L1PA6 6164 + 5587 6162 29803 398 1 3 174 chain 23852 chr6 170805979 + 76344468 76344815 THE1B 368 + 0 367 51020 44 1 16 112 8 6 19 2 0 109 5 13 29 3 4 15 chain 197640 chr6 170805979 + 76390547 76392867 L1P1 4361 + 4 2345 9790 112 5 19 418 0 1 313 0 2 194 18 18 366 0 4 894 chain 23607 chr6 170805979 + 76402439 76402701 L1PA2 6032 + 5770 6032 51419 262 chain 4645 chr6 170805979 + 76418114 76418168 MLT1E1A 663 + 185 239 87561 54 chain 5902 chr6 170805979 + 76519819 76519892 LTR50 688 + 8 81 81475 73 chain 26770 chr6 170805979 + 76529680 76530046 MLT2A1 477 + 33 397 46585 136 5 2 8 0 1 24 0 1 14 1 2 40 4 5 118 3 0 13 chain 26146 chr6 170805979 + 76550155 76550475 L1PA7 6471 + 6150 6469 47502 151 0 1 7 2 0 160 chain 29682 chr6 170805979 + 76561026 76561425 LTR7 482 + 0 482 42387 101 15 14 17 0 51 41 5 37 46 0 1 174 chain 5384 chr6 170805979 + 76562299 76562366 LTR7 482 + 2 69 83769 67 chain 22900 chr6 170805979 + 76562374 76562688 LTR7 482 + 115 474 52512 109 0 1 39 0 31 19 0 10 41 1 2 52 12 14 41 chain 32761 chr6 170805979 + 76596612 76597241 L1PB1 5432 + 4849 5422 39706 249 44 16 24 1 0 4 3 2 10 11 7 8 2 0 50 1 0 63 40 28 16 39 35 9 1 0 22 1 0 12 1 0 18 chain 174877 chr6 170805979 + 76599192 76602763 L1PA10 4194 + 1655 4143 10844 138 0 1 57 6 7 86 12 13 252 0 1 15 4 8 202 2 8 5 1 0 97 0 1 4 1 0 255 1 0 123 3 6 211 32 1 61 1103 53 110 0 1 14 3 8 23 18 0 17 17 0 273 7 18 27 8 9 59 11 9 184 0 5 100 3 0 26 chain 54858 chr6 170805979 + 76600765 76601491 L1PA7 6471 + 5811 6459 27922 102 79 0 410 0 1 135 chain 28456 chr6 170805979 + 76609917 76610266 L1PA5 6144 + 5785 6128 44185 106 4 1 136 3 0 100 chain 4764 chr6 170805979 + 76638726 76639009 L1MB7 1623 + 1165 1429 86890 22 206 188 48 1 0 6 chain 29478 chr6 170805979 + 76674378 76674697 AluYb8 318 + 1 313 42631 304 7 0 8 chain 240173 chr6 170805979 + 76735334 76738076 L1PA5 6144 + 3402 6142 8464 1167 4 1 57 0 1 365 1 0 259 0 1 889 chain 160036 chr6 170805979 + 76743682 76745513 SVA_F 1814 + 0 1814 11753 887 0 1 59 0 15 86 37 0 732 0 3 14 0 1 16 chain 4577 chr6 170805979 + 76779495 76779593 L1MB7 1623 + 759 859 87924 30 31 33 37 chain 105283 chr6 170805979 + 76785822 76787103 L1PA7 6471 + 5190 6468 17648 249 0 1 132 7 0 48 0 4 6 4 5 65 1 0 436 0 1 321 2 0 10 chain 3251 chr6 170805979 + 76818154 76818206 MER52A 1651 + 892 936 97473 24 8 0 20 chain 80787 chr6 170805979 + 76891087 76891960 L1PA3long 6157 + 5284 6157 21476 873 chain 28444 chr6 170805979 + 76957248 76957753 L1PREC2 3366 + 2467 2953 44204 16 5 3 24 10 11 59 3 0 5 0 8 121 1 0 33 1 0 5 2 0 54 4 3 41 1 0 3 3 0 11 32 24 16 13 8 10 1 0 31 chain 536867 chr6 170805979 + 76958965 76964983 L1PA3long 6157 + 2 6144 1512 150 0 1 131 11 0 492 0 128 552 1 0 391 0 5 730 1 2 1362 0 1 2197 chain 24817 chr6 170805979 + 76965605 76965955 THE1B 368 + 6 368 49564 38 0 15 109 2 0 124 4 3 41 6 9 5 3 0 18 chain 17315 chr6 170805979 + 76980731 76980951 L1PA7 6471 + 6245 6465 59438 220 chain 116044 chr6 170805979 + 77043864 77045119 L1PA2 6032 + 4777 6032 16227 1255 chain 10462 chr6 170805979 + 77046883 77047001 L1PA3long 6157 + 6033 6151 69492 118 chain 173529 chr6 170805979 + 77049994 77052137 L1PA7 6471 + 4351 6463 10925 628 32 0 12 6 6 91 14 14 127 0 3 392 2 0 839 chain 39518 chr6 170805979 + 77053578 77054032 L1PA5 6144 + 5690 6143 35002 195 1 0 258 chain 138962 chr6 170805979 + 77060944 77062468 L1PA2 6032 + 4508 6032 13192 1093 0 2 424 2 0 5 chain 31790 chr6 170805979 + 77103034 77103447 MLT2A1 477 + 0 477 40508 85 5 4 53 0 1 25 1 5 214 0 60 30 chain 6070 chr6 170805979 + 77126714 77126788 L1PA16 3655 + 225 299 80834 74 chain 118649 chr6 170805979 + 77158395 77159707 L1PA3long 6157 + 3786 5111 15782 830 0 12 371 0 1 111 chain 21058 chr6 170805979 + 77163888 77164140 AluY 311 + 40 293 55049 87 1 2 164 chain 27940 chr6 170805979 + 77210401 77210698 AluYa5 310 + 11 307 44969 121 1 0 175 chain 282143 chr6 170805979 + 77235445 77239218 HERVL-int 5654 + 0 5654 7371 170 0 1 696 1 6 165 7 9 90 10 15 524 124 11 216 0 2 131 4 5 300 0 1 297 1 0 34 1 16 354 3 1972 35 8 11 164 25 9 130 0 3 48 0 4 235 chain 3949 chr6 170805979 + 77237178 77237223 HERVL-int 5654 + 3001 3046 91770 45 chain 536035 chr6 170805979 + 77251532 77257669 L1PA5 6144 + 5 6141 1562 1511 5 6 978 0 1 675 1 0 51 0 1 447 2 0 275 0 2 211 0 1 71 0 2 1250 6 0 654 chain 25031 chr6 170805979 + 77273734 77274104 THE1B 368 + 0 368 49229 172 11 10 20 2 0 99 0 1 4 27 27 35 chain 27660 chr6 170805979 + 77406930 77407288 L1PA7 6471 + 6098 6467 45381 32 1 2 173 10 25 130 5 0 7 chain 3679 chr6 170805979 + 77432803 77432886 LTR34 700 + 258 353 93750 23 28 40 32 chain 3308 chr6 170805979 + 77451165 77451219 MER20 218 + 160 215 96935 15 6 7 33 chain 481618 chr6 170805979 + 77518215 77524467 L1PA7 6471 + 1 6402 3594 356 0 1 5 1 0 45 1 3 88 23 23 93 15 11 209 7 0 300 12 112 24 7 8 236 0 1 251 0 1 4 3 2 484 0 1 382 2 1 179 0 1 192 0 1 311 12 9 193 0 1 95 3 0 8 0 3 192 0 1 172 4 10 5 3 0 462 0 4 185 0 8 207 1 0 4 0 1 100 17 19 340 2 1 268 0 3 81 0 2 272 0 1 25 8 0 7 0 8 123 9 10 79 8 74 33 0 2 59 36 0 9 chain 255609 chr6 170805979 + 77537629 77540919 L1PA8A 6298 + 2988 6290 8100 5 0 2 20 0 2 84 19 12 260 0 1 201 2 1 129 19 3 86 0 1 82 0 2 940 1 0 65 0 1 288 2 1 70 1 2 243 4 10 25 7 8 254 0 19 340 13 15 130 chain 26372 chr6 170805979 + 77601557 77601860 L1P2 5180 + 1849 2152 47159 303 chain 38672 chr6 170805979 + 77634607 77635233 MER41B 635 + 0 612 35587 115 11 12 38 29 15 116 19 0 10 7 26 125 26 25 130 chain 8705 chr6 170805979 + 77729232 77729360 MER85 139 + 0 139 73201 91 8 19 29 chain 26108 chr6 170805979 + 77739359 77739724 L1PA8 5853 + 5480 5845 47557 84 26 26 18 2 0 85 1 0 47 0 4 16 1 0 85 chain 227646 chr6 170805979 + 77743576 77746267 L1P1 4361 + 594 3277 8820 98 7 0 532 27 27 1926 5 4 96 chain 434405 chr6 170805979 + 77748837 77754252 L1PA7 6471 + 1016 6460 4679 197 0 4 45 22 22 211 0 3 767 1 0 370 1 3 278 1 0 209 0 4 270 0 1 80 11 6 17 5 4 16 0 3 142 5 9 417 3 0 163 1 2 313 3 10 80 6 10 187 0 1 47 0 1 47 1 0 80 13 19 569 0 1 608 0 1 74 1 2 6 2 0 6 4 3 136 chain 134842 chr6 170805979 + 77788081 77789614 L1PA4 6152 + 3817 5350 13552 991 1 0 461 0 1 80 chain 79970 chr6 170805979 + 77790812 77791692 L1PA2 6032 + 5149 6030 21633 383 0 1 497 chain 142353 chr6 170805979 + 77850184 77851793 L1PA5 6144 + 4531 6144 12904 96 0 1 103 1 0 837 0 2 240 0 2 332 chain 463196 chr6 170805979 + 77862081 77867414 L1PA4 6152 + 0 5338 4048 135 7 0 320 2 0 30 3 4 518 10 1 288 0 1 146 0 1 70 0 2 1701 0 3 1136 0 4 278 0 5 95 1 0 229 1 0 330 1 9 32 chain 8926 chr6 170805979 + 77871439 77871600 L1PA16 3655 + 3483 3619 72728 94 3 0 9 1 0 4 22 6 7 5 0 16 chain 32868 chr6 170805979 + 77902560 77903009 MER4A1 472 + 0 472 39615 213 1 0 22 4 7 24 7 27 126 0 1 52 chain 152189 chr6 170805979 + 77908662 77910405 L1P1 4361 + 2293 4328 12216 208 4 0 99 0 1 251 0 297 28 1 0 757 0 1 216 1 0 154 1 0 23 chain 130771 chr6 170805979 + 77918991 77920418 L1PA2 6032 + 2358 3785 13948 1427 chain 140027 chr6 170805979 + 77927564 77929133 L1PA4 6152 + 4566 6141 13094 738 0 4 689 1 2 4 0 1 137 chain 67249 chr6 170805979 + 78021099 78021946 L1PA8 5853 + 4999 5853 24637 7 0 12 75 0 1 500 1 2 4 1 0 8 2 0 70 2 1 9 1 0 52 2 1 19 1 0 93 chain 132551 chr6 170805979 + 78029617 78031177 LTR12C 1709 + 0 1709 13776 287 4 0 149 0 1 375 0 40 260 1 0 6 2 0 106 0 4 168 0 102 87 0 10 10 2 1 103 chain 333455 chr6 170805979 + 78068296 78072086 L1PA4 6152 + 2352 6143 6156 1358 2 3 206 0 1 106 0 1 485 3 0 299 2 0 5 0 2 1053 0 1 271 chain 8028 chr6 170805979 + 78090720 78090820 MER4A 717 + 608 710 74818 9 0 1 86 0 1 5 chain 66497 chr6 170805979 + 78127933 78128666 L1PA3long 6157 + 5377 6152 24825 611 0 42 122 chain 41452 chr6 170805979 + 78133041 78133559 LTR12F 595 + 0 595 33706 103 6 1 33 0 82 376 chain 270412 chr6 170805979 + 78135725 78140229 HERVK22-int 3844 + 0 3844 7698 36 3 0 514 0 1 439 6 7 433 1 0 212 2 4 697 1 0 5 5 6 61 18 1 104 0 2 126 8 9 284 7 8 95 1 0 75 1 0 5 1 0 18 1 0 35 1 0 15 8 6 30 8 19 45 5 3 11 21 11 4 1 0 12 104 77 20 11 7 29 801 196 70 41 40 57 1 0 15 chain 38098 chr6 170805979 + 78160260 78160754 LTR15 485 + 0 485 35990 11 2 0 6 0 1 277 6 5 42 9 0 115 4 6 22 chain 143743 chr6 170805979 + 78199535 78201143 L1PA4 6152 + 4263 5878 12788 90 0 4 1132 1 3 42 0 1 204 1 0 4 0 1 134 chain 169250 chr6 170805979 + 78226649 78228564 L1P1 4361 + 1480 3396 11141 42 0 1 158 0 1 28 1 0 604 1 0 940 0 1 141 chain 26427 chr6 170805979 + 78270773 78271064 L1PA3long 6157 + 5866 6157 47090 291 chain 138807 chr6 170805979 + 78358777 78360357 L1PA5 6144 + 4549 6140 13206 157 0 1 584 0 3 661 0 6 28 0 1 150 chain 4558 chr6 170805979 + 78400003 78400088 MER5A1 166 + 50 136 88030 28 19 20 38 chain 534271 chr6 170805979 + 78467208 78473273 L1PA4 6152 + 1 6084 1650 58 1 4 515 1 0 74 0 1 1022 0 11 1936 0 4 56 2 0 1735 0 1 547 0 1 118 chain 145276 chr6 170805979 + 78570973 78572781 L1PA6 6164 + 4341 6158 12668 27 0 4 171 0 1 105 2 0 118 0 1 16 11 12 157 8 10 267 0 1 87 5 9 34 1 3 180 1 0 459 3 0 12 1 0 143 chain 108141 chr6 170805979 + 78585674 78586931 HERVH-int 3825 + 1852 3120 17302 163 0 10 512 1 0 516 26 28 39 chain 8409 chr6 170805979 + 78588014 78588104 LTR7 482 + 0 90 73877 90 chain 28888 chr6 170805979 + 78641163 78641469 AluYg6 310 + 0 306 43500 306 chain 538714 chr6 170805979 + 78646742 78652879 L1PA4 6152 + 0 6152 1413 1112 0 1 123 0 1 197 1 0 111 0 1 610 1 2 1299 0 11 2416 1 2 266 chain 500622 chr6 170805979 + 78675974 78682449 L1PA6 6164 + 0 6160 3105 39 17 16 28 0 1 158 0 1 7 2 1 120 0 8 11 14 13 97 11 10 282 17 0 935 0 1 102 0 2 379 8 10 82 27 0 22 0 1 211 3 6 312 303 0 283 0 1 50 0 1 26 1 0 6 4 5 90 0 1 198 0 4 175 1 2 800 0 2 283 1 4 575 5 8 646 3 4 141 chain 464609 chr6 170805979 + 78694320 78699836 L1PA4 6152 + 14 5519 4004 170 17 0 328 1 2 411 0 1 468 4 8 99 0 2 603 0 1 699 0 5 122 5 6 476 0 1 147 13 8 131 8 0 234 2 3 540 0 1 844 5 6 189 chain 36303 chr6 170805979 + 78720208 78720716 THE1C-int 1605 + 15 537 37213 14 5 6 269 0 1 24 0 6 9 4 3 91 16 23 76 chain 264012 chr6 170805979 + 78736324 78742547 L1PA5 6144 + 0 5961 7855 720 11 12 75 17 0 11 0 17 34 0 1 18 0 281 198 0 1 65 1 0 401 2925 2387 217 0 1 219 4 1 249 3 0 386 1 0 591 1 0 76 chain 505983 chr6 170805979 + 78758153 78764139 L1PA4 6152 + 21 6140 2931 5 0 1 130 29 26 159 38 39 687 0 1 166 2 0 205 1 0 741 1 3 116 0 1 69 0 1 205 1 2 252 0 4 1052 0 1 51 0 1 917 0 1 190 0 89 56 15 15 111 0 36 339 1 0 447 chain 204387 chr6 170805979 + 78780461 78783127 L1PBa1 4058 + 10 3427 9559 25 4 3 9 11 8 376 4 1 186 14 13 78 0 19 380 1 0 243 0 2 65 0 1 243 1 0 155 2 1 200 4 5 100 25 24 52 0 740 373 0 1 28 3 2 84 chain 286891 chr6 170805979 + 78783128 78786492 L1HS 6032 + 1 3367 7233 251 8 7 54 2 1 1992 1 4 144 1 2 911 chain 70745 chr6 170805979 + 78794341 78795130 L1PA3long 6157 + 5367 6157 23817 635 0 1 154 chain 113862 chr6 170805979 + 78798201 78799462 L1PA3long 6157 + 4895 6157 16568 338 5 6 918 chain 341468 chr6 170805979 + 78817545 78821859 L1PA5 6144 + 0 6143 6038 135 6 20 144 61 62 218 0 1 118 1 2 166 0 1 141 0 1 4 1 0 56 15 15 85 9 0 66 1 0 685 0 1 319 82 1892 26 0 1 53 0 1 61 0 1 633 3 0 121 0 1 13 0 1 249 1 5 14 0 1 15 0 1 5 0 1 637 1 2 169 chain 106547 chr6 170805979 + 78838917 78840266 L1PA8 5853 + 4504 5852 17489 203 0 1 126 0 1 174 0 3 72 0 2 305 1 0 173 1 0 32 23 21 61 2 1 14 12 11 36 2 1 19 1 0 92 chain 117709 chr6 170805979 + 78854735 78856411 HERVK14-int 1672 + 1 1657 15937 29 1 0 11 1 0 45 1 0 168 0 3 43 31 11 16 1 0 4 5 3 21 1 10 201 2 1 41 6 5 67 5 6 85 0 1 47 1 0 163 1 0 31 3 5 40 8 6 8 2 0 9 0 1 23 1 0 203 2 1 35 3 6 34 1 0 4 15 16 12 5 4 59 6 5 26 2 0 9 1 0 15 0 3 83 2 0 37 chain 21689 chr6 170805979 + 78858338 78858747 LTR14B 630 + 0 630 54238 23 2 1 29 0 179 42 32 53 33 0 10 30 15 25 117 39 41 47 chain 75251 chr6 170805979 + 78858787 78859755 LTR5_Hs 974 + 0 974 22783 289 0 1 177 0 1 188 1 0 163 47 52 103 chain 24384 chr6 170805979 + 78874801 78875229 L1PA17 2846 + 2268 2693 50191 219 1 0 9 26 30 9 1 0 55 37 34 8 1 0 9 11 10 42 chain 116910 chr6 170805979 + 78877514 78879112 L1P2 5180 + 2 1608 16070 107 24 10 31 1 0 97 6 5 168 0 1 30 5 1 45 20 18 15 0 1 205 17 13 38 2 1 5 1 0 125 0 4 5 0 25 476 0 5 175 chain 20097 chr6 170805979 + 78879120 78879357 L1PA5 6144 + 5904 6141 56261 237 chain 94021 chr6 170805979 + 78889270 78890425 L1PA7 6471 + 5305 6470 19035 293 1 5 41 8 7 47 0 2 696 4 10 8 0 1 43 2 0 12 chain 3244 chr6 170805979 + 78896075 78896111 L1ME1 1623 + 200 236 97529 36 chain 367916 chr6 170805979 + 78920945 78925320 L1PA4 6152 + 6 6141 5697 168 0 1 1222 9 0 8 0 9 55 0 1 848 1 2 66 0 4 186 1 2 687 0 2 421 1 0 189 0 1753 233 2 0 43 0 1 141 1 0 93 chain 537502 chr6 170805979 + 78971515 78977518 L1PA3long 6157 + 2 6140 1483 5 3 0 145 0 1 54 0 1 4 1 0 152 0 1 403 8 136 542 2 1 118 0 2 782 0 2 869 0 1 38 0 2 8 0 1 2737 0 1 132 chain 25796 chr6 170805979 + 79128677 79129131 L1PA13 3608 + 147 575 48020 16 1 0 14 0 1 22 28 18 73 2 0 125 1 0 12 6 5 12 2 0 16 6 2 18 1 0 17 6 4 14 2 0 13 1 0 46 chain 23460 chr6 170805979 + 79132945 79133215 L1PA7 6471 + 6198 6468 51649 270 chain 26410 chr6 170805979 + 79161387 79161760 THE1C 375 + 0 375 47104 186 19 18 127 10 14 4 1 0 26 chain 3412 chr6 170805979 + 79166108 79166158 L1MC5 759 + 667 715 95980 5 0 1 34 3 0 8 chain 8617 chr6 170805979 + 79272056 79272390 MLT1A 405 + 3 359 73415 40 20 19 52 175 200 40 2 0 5 chain 510936 chr6 170805979 + 79284679 79290532 L1PA5 6144 + 0 5879 2723 964 0 1 197 0 18 1282 10 0 2554 1 0 130 0 5 146 21 26 59 0 1 88 0 1 245 0 1 51 2 7 103 chain 6397 chr6 170805979 + 79300702 79300781 LTR56 451 + 195 274 79681 79 chain 8741 chr6 170805979 + 79337576 79337788 MLT1A0 366 + 102 324 73114 51 1 2 8 6 0 6 7 18 13 53 57 67 chain 482738 chr6 170805979 + 79347176 79352930 L1PA6 6164 + 410 6162 3578 255 4 7 351 1 0 409 0 1 201 0 1 520 0 1 161 10 8 818 0 2 23 0 2 15 2 0 152 0 1 927 0 1 35 0 2 273 0 1 72 7 9 14 36 18 622 0 4 846 chain 59947 chr6 170805979 + 79362652 79363359 L1PA5 6144 + 3740 4453 26387 21 0 1 392 1 0 126 0 2 60 1 5 106 chain 130569 chr6 170805979 + 79389894 79391345 L1PA2 6032 + 4581 6032 13971 1275 1 0 4 0 1 171 chain 33295 chr6 170805979 + 79398817 79399188 L1PA4 6152 + 5767 6138 39267 371 chain 4746 chr6 170805979 + 79409726 79410171 MER34B 572 + 8 517 86983 27 269 328 26 86 91 37 chain 8903 chr6 170805979 + 79440306 79440450 MER70A 477 + 321 470 72780 84 25 30 35 chain 51776 chr6 170805979 + 79460139 79460757 L1P1 4361 + 615 1226 28945 77 7 0 534 chain 16813 chr6 170805979 + 79529322 79529518 LTR71A 459 + 1 197 60018 196 chain 42171 chr6 170805979 + 79529617 79530110 L1PA5 6144 + 5647 6138 33265 244 2 0 81 1 0 4 0 1 161 chain 12858 chr6 170805979 + 79544064 79544247 MER107 203 + 16 202 65335 112 2 0 33 0 2 13 9 12 14 chain 18953 chr6 170805979 + 79549384 79549634 Tigger3c 601 + 11 490 57592 22 1 4 42 0 226 185 chain 513758 chr6 170805979 + 79577656 79583766 L1PA6 6164 + 4 6140 2583 233 0 2 279 0 2 47 1 0 50 6 1 533 0 10 8 0 3 5 17 4 242 1 0 42 0 4 744 0 2 117 5 6 236 3 9 557 0 3 47 0 2 252 0 1 4 1 0 670 0 5 923 0 1 267 0 3 78 0 1 436 0 1 168 2 1 5 0 1 131 chain 7086 chr6 170805979 + 79586261 79586346 MER30 238 + 139 224 77308 85 chain 22788 chr6 170805979 + 79590111 79590424 L1PA16 3655 + 3053 3377 52689 36 2 1 33 3 4 22 0 14 41 1 0 86 2 0 87 chain 12654 chr6 170805979 + 79682731 79682879 L1PA6 6164 + 5680 5833 65714 64 0 5 84 chain 15226 chr6 170805979 + 79682879 79683049 L1PA6 6164 + 5834 6004 62007 170 chain 13236 chr6 170805979 + 79683053 79683207 L1PA6 6164 + 6010 6162 64724 144 2 0 8 chain 82544 chr6 170805979 + 79740477 79741452 L1PA7 6471 + 5494 6470 21112 127 1 0 517 0 1 190 0 1 140 chain 50809 chr6 170805979 + 79806574 79807272 LTR12 884 + 0 869 29277 25 1 0 37 0 4 31 0 107 27 41 0 105 1 2 37 6 4 171 0 103 216 chain 10121 chr6 170805979 + 79812507 79812620 L1PA7 6471 + 6340 6454 70161 27 0 1 86 chain 30477 chr6 170805979 + 79815742 79816184 MLT2A1 477 + 0 477 41600 171 18 16 14 0 3 179 23 57 37 chain 4410 chr6 170805979 + 79826824 79826875 MADE1 96 + 45 96 88843 51 chain 15746 chr6 170805979 + 79871428 79871623 L1PA7 6471 + 6264 6459 61358 195 chain 7503 chr6 170805979 + 79887403 79887704 MSTD 398 + 69 369 76122 39 186 186 31 1 0 44 chain 191025 chr6 170805979 + 79958072 79960239 L1PA5 6144 + 3965 6142 10067 673 1 0 57 0 13 408 1 0 876 1 4 139 4 0 7 chain 21965 chr6 170805979 + 79988559 79989030 MLT2A1 477 + 0 477 53890 169 4 1 11 4 5 14 1 113 33 0 3 36 4 0 9 1 0 4 1 0 4 12 0 10 1 0 5 1 0 5 92 1 14 1 5 35 chain 7736 chr6 170805979 + 79991564 79991659 MLT1B 390 + 271 366 75521 95 chain 15887 chr6 170805979 + 79993309 79993511 MSTB-int 1649 + 469 670 61174 78 1 0 123 chain 25878 chr6 170805979 + 79997534 79997894 MER75 514 + 160 514 47899 18 7 0 300 10 11 25 chain 10910 chr6 170805979 + 80070678 80070847 MER2B 336 + 162 335 68681 110 20 24 39 chain 41224 chr6 170805979 + 80117465 80117953 MER9a3 513 + 0 506 33830 18 0 2 237 0 18 181 2 0 50 chain 114163 chr6 170805979 + 80148702 80149988 L1PA3long 6157 + 4879 6157 16532 250 2 1 253 0 1 142 0 1 181 9 0 449 chain 38287 chr6 170805979 + 80187517 80188134 L1PA15 4387 + 3709 4309 35851 90 26 26 13 4 2 42 1 0 4 6 4 42 1 0 170 5 4 25 1 0 49 6 5 22 4 0 10 1 0 50 6 3 39 chain 72293 chr6 170805979 + 80294139 80295197 MER11A 1151 + 7 1151 23466 48 0 99 74 1 0 62 8 4 33 0 2 55 1 0 4 0 1 45 9 10 90 10 11 28 0 1 107 10 11 118 0 26 26 43 0 58 0 1 10 5 6 34 1 0 12 0 1 132 0 1 34 chain 29627 chr6 170805979 + 80384054 80384815 MLT2A1 477 + 1 477 42456 137 0 1 30 1 5 13 0 3 5 3 2 82 332 1 44 1 0 38 26 66 49 chain 452879 chr6 170805979 + 80384815 80390763 HERVL-int 5654 + 0 5654 4309 108 16 17 32 25 8 117 0 1 665 1 5 171 0 1 119 1 0 4 0 1 56 0 19 15 317 0 255 0 2 210 4 8 139 1 3 300 1 0 4 0 1 610 1 0 350 0 4 103 8 1 278 2 5 331 2 0 615 0 1 206 1 7 130 0 3 91 36 36 194 1 2 257 0 3 100 4 0 18 1 0 48 chain 26883 chr6 170805979 + 80478746 80479030 AluYa5 310 + 26 310 46431 284 chain 16322 chr6 170805979 + 80482339 80482563 MER30 238 + 0 237 60603 104 6 20 15 1 0 98 chain 28735 chr6 170805979 + 80485157 80485467 AluYa5 310 + 0 307 43736 132 3 0 175 chain 10238 chr6 170805979 + 80490394 80490565 MER20 218 + 37 213 69923 43 8 11 65 7 8 14 6 7 28 chain 13185 chr6 170805979 + 80547382 80547616 THE1D 372 + 90 330 64804 49 0 1 26 44 45 16 7 11 92 chain 487198 chr6 170805979 + 80612183 80618208 L1PA6 6164 + 56 6162 3488 89 0 15 227 28 29 33 19 0 118 9 8 107 0 1 104 0 17 169 2 0 58 0 1 147 0 1 539 0 1 28 0 18 58 5 7 492 1 2 642 0 24 124 0 6 117 0 1 52 0 1 224 0 3 179 4 0 5 0 3 509 6 10 145 0 4 573 13 14 351 0 4 52 0 1 571 0 1 215 4 0 6 chain 85692 chr6 170805979 + 80634673 80635670 LTR5A 1029 + 0 1029 20505 13 0 2 43 0 5 71 0 13 200 0 1 55 1 12 614 chain 142075 chr6 170805979 + 80645028 80647010 L1PB1 5432 + 3380 5427 12929 79 15 0 105 0 2 170 12 4 221 7 8 208 0 1 100 0 1 134 0 8 102 0 4 78 0 4 12 3 0 176 2 1 280 29 122 20 2 1 16 1 0 33 0 1 10 1 0 15 23 12 10 11 9 4 1 0 15 2 0 24 2 1 33 1 0 18 2 0 5 chain 18607 chr6 170805979 + 80671573 80671784 L1PA4 6152 + 5931 6143 57989 119 0 1 92 chain 251108 chr6 170805979 + 80684665 80687711 L1PA4 6152 + 1436 4500 8196 208 4 6 107 0 1 419 0 6 137 1 2 46 1 0 4 0 1 729 0 6 65 1 2 240 0 1 1084 chain 11420 chr6 170805979 + 80727713 80727849 L1PA7 6471 + 6328 6466 67879 128 0 2 8 chain 431356 chr6 170805979 + 80745556 80750374 L1PA3long 6157 + 1323 6157 4732 821 0 6 134 0 1 1006 0 1 950 0 1 1082 0 1 411 0 1 269 1 2 93 0 4 51 chain 11057 chr6 170805979 + 80778427 80778643 L1MA5A 2387 + 1427 1659 68477 65 63 78 50 0 1 38 chain 181591 chr6 170805979 + 80783050 80785157 L1P1 4361 + 5 2128 10521 13 0 6 705 0 1 326 0 2 513 0 3 339 0 4 211 chain 4641 chr6 170805979 + 80793502 80793575 MER97c 529 + 426 505 87591 9 0 5 13 2 3 49 chain 78880 chr6 170805979 + 80796596 80797468 L1PA3long 6157 + 3913 4785 21903 872 chain 299406 chr6 170805979 + 80800855 80804099 L1PA2 6032 + 2392 5639 6849 732 0 3 2512 chain 479639 chr6 170805979 + 80820763 80826145 L1PA3long 6157 + 19 6155 3642 75 0 526 156 0 128 2262 0 2 90 6 5 105 0 97 761 4 0 213 0 1 864 0 4 501 0 1 345 chain 68223 chr6 170805979 + 80829473 80830236 L1PA4 6152 + 4203 4966 24399 763 chain 538239 chr6 170805979 + 80847741 80853765 L1PA3long 6157 + 0 6152 1442 153 0 1 627 0 128 537 1 0 4706 chain 92632 chr6 170805979 + 80870208 80871496 L1PB1 5432 + 3780 5082 19251 111 7 8 91 1 2 61 7 12 22 1 0 21 1 0 83 1 2 241 11 12 183 2 0 132 1 2 41 0 9 180 5 4 85 chain 81205 chr6 170805979 + 80906439 80907368 L1PA5 6144 + 5214 6144 21389 80 2 0 587 0 1 209 0 2 51 chain 86246 chr6 170805979 + 80912511 80913463 L1PA3long 6157 + 4470 5422 20371 952 chain 240492 chr6 170805979 + 80918378 80920950 L1HS 6032 + 1741 4313 8461 2572 chain 34458 chr6 170805979 + 80981141 80981679 LTR7B 505 + 0 495 38391 141 5 15 38 72 0 33 2 0 5 2 25 184 14 13 20 0 1 5 2 0 15 chain 28251 chr6 170805979 + 81004961 81005340 MLT2A1 477 + 0 395 44481 142 0 1 26 1 5 123 4 11 32 0 1 41 0 3 10 chain 123565 chr6 170805979 + 81005526 81007089 THE1A-int 1579 + 2 1574 14920 492 1 2 159 1 0 376 0 2 342 4 11 188 chain 76417 chr6 170805979 + 81048295 81049185 L1PA4 6152 + 5253 6143 22455 41 1 0 523 1 2 324 chain 22597 chr6 170805979 + 81059160 81059516 THE1B 368 + 0 368 52991 18 0 1 146 67 78 125 chain 41640 chr6 170805979 + 81063005 81063496 MER9a1 513 + 0 513 33602 244 1 23 246 chain 68937 chr6 170805979 + 81124536 81125295 L1PA3long 6157 + 5388 6147 24228 759 chain 124553 chr6 170805979 + 81135159 81136701 L1PA7 6471 + 4909 6464 14772 318 1 0 66 20 34 134 0 1 159 1 0 87 5 6 109 0 3 444 12 8 186 chain 3035 chr6 170805979 + 81136713 81136753 Tigger3c 601 + 145 186 99463 36 0 1 4 chain 33331 chr6 170805979 + 81158318 81158921 L1PB2 3958 + 3275 3838 39232 32 2 0 37 8 6 13 17 11 65 7 5 12 11 8 69 0 1 11 2 0 6 1 0 7 16 12 47 7 6 23 0 1 34 1 0 74 2 0 20 16 0 63 chain 3693 chr6 170805979 + 81201386 81201425 THE1B-int 1605 + 580 619 93665 39 chain 166163 chr6 170805979 + 81208639 81210464 L1PA3long 6157 + 4324 6149 11328 1825 chain 44201 chr6 170805979 + 81243380 81243904 L1PA7 6471 + 5944 6465 32010 515 3 0 6 chain 83653 chr6 170805979 + 81256684 81257764 L1P3 4156 + 3027 4102 20882 472 3 4 14 0 2 7 3 2 229 0 1 75 1 0 159 26 19 91 chain 125140 chr6 170805979 + 81269164 81270660 L1PA6 6164 + 3605 5097 14680 469 7 8 567 3 0 141 1 0 253 1 0 54 chain 7706 chr6 170805979 + 81271158 81271273 L1MA9 1812 + 81 197 75612 44 10 11 61 chain 169002 chr6 170805979 + 81285489 81287390 L1PA4 6152 + 4250 6151 11155 1901 chain 62469 chr6 170805979 + 81336945 81337734 LTR17 781 + 0 781 25760 192 0 1 106 10 0 27 2 3 63 8 7 374 0 1 7 chain 345964 chr6 170805979 + 81339409 81343543 HERV17-int 4347 + 12 4347 5967 14 2 1 51 1 0 35 2 0 26 1 0 138 1 0 104 10 13 99 0 1 133 0 1 96 0 1 186 1 4 120 11 9 125 0 3 175 2 0 15 0 1 112 4 0 212 0 1 510 14 201 712 0 1 4 1 0 31 0 1 243 0 12 769 0 1 174 chain 6094 chr6 170805979 + 81343857 81343927 LTR17 781 + 0 70 80755 70 chain 71210 chr6 170805979 + 81345108 81345894 L1PA3long 6157 + 5054 5831 23714 654 9 0 123 chain 54182 chr6 170805979 + 81351166 81351874 LTR17 781 + 71 771 28159 121 0 1 106 10 0 27 1 2 24 22 23 17 8 7 372 chain 19752 chr6 170805979 + 81365960 81366174 L1PA3long 6157 + 5026 5240 56728 214 chain 175856 chr6 170805979 + 81374147 81376608 L1PA8A 6298 + 4137 6291 10786 49 0 3 55 1 3 945 0 1 7 8 0 289 2 1 57 307 0 599 1 3 49 0 1 92 chain 69618 chr6 170805979 + 81400490 81401271 L1PA2 6032 + 5226 6032 24092 36 0 1 149 0 24 24 0 1 315 1 0 256 chain 31597 chr6 170805979 + 81407113 81407462 L1PA4 6152 + 5803 6152 40669 349 chain 58869 chr6 170805979 + 81408853 81409518 L1PA4 6152 + 4685 5350 26713 665 chain 487302 chr6 170805979 + 81433358 81474162 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440 0 24 170 11 164 183 335 0 63 0 1 5 1 0 87 1 0 13 16 5 210 1 25 42 0 4 129 7 8 137 1 0 521 1 0 71 0 6 22 1 3 222 0 1 131 0 2 139 8 7 79 1 5 84 0 2 243 0 2 58 12 10 508 6 0 318 5 6 198 4 0 174 3 2 12 0 1 613 chain 7449 chr6 170805979 + 81976900 81977006 MSTB 430 + 322 430 76245 39 4 5 5 0 1 58 chain 3925 chr6 170805979 + 81983505 81983549 MADE1 96 + 52 96 91944 44 chain 44833 chr6 170805979 + 82079660 82080240 L1PA16 3655 + 2062 2639 31679 35 0 4 201 8 0 246 0 1 90 chain 143560 chr6 170805979 + 82092369 82093953 L1PA3long 6157 + 4573 6157 12799 1584 chain 544868 chr6 170805979 + 82101303 82107312 L1PA2 6032 + 0 6029 1039 249 0 4 319 0 1 1765 0 15 526 0 1 169 1 0 2980 chain 32590 chr6 170805979 + 82132837 82133265 L1PA8 5853 + 5428 5847 39873 75 2 0 59 1 0 48 2 0 68 2 1 8 4 3 50 2 1 19 1 0 87 chain 505984 chr6 170805979 + 82150922 82157271 L1PA6 6164 + 0 6045 2930 194 1 2 4 1 0 367 1 0 609 316 0 579 47 46 533 2 0 227 0 1 17 0 4 325 23 22 985 0 2 1118 0 1 131 0 5 99 0 2 41 0 2 729 chain 28683 chr6 170805979 + 82152109 82152415 AluYg6 310 + 0 306 43829 306 chain 39150 chr6 170805979 + 82157608 82158238 L1PB1 5432 + 4436 5082 35248 72 8 13 28 22 23 57 2 1 62 7 13 86 42 45 178 4 6 62 chain 22099 chr6 170805979 + 82232890 82233177 AluSp 311 + 20 304 53696 165 16 11 79 0 2 27 chain 6211 chr6 170805979 + 82240986 82241072 MER85 139 + 42 139 80314 54 0 14 6 3 0 23 chain 14103 chr6 170805979 + 82261561 82261818 MER4A1 472 + 109 400 63449 138 73 107 46 chain 61420 chr6 170805979 + 82288307 82289109 L1PA8 5853 + 5061 5853 26005 380 0 1 62 5 0 105 2 0 70 11 9 52 2 1 19 1 0 93 chain 127566 chr6 170805979 + 82301844 82303281 L1PA3long 6157 + 4715 6156 14345 591 0 1 239 0 3 607 chain 5472 chr6 170805979 + 82440668 82440734 MER41B 635 + 481 547 83345 66 chain 538847 chr6 170805979 + 82469506 82475649 L1PA4 6152 + 1 6151 1407 149 14 0 1082 4 5 36 1 2 652 0 1 111 1 3 344 0 4 116 0 2 385 0 2 91 0 2 520 0 1 847 0 4 1648 0 1 142 chain 16514 chr6 170805979 + 82507093 82507338 HSMAR2 1300 + 98 340 60352 111 5 1 44 16 17 69 chain 496116 chr6 170805979 + 82512321 82518423 L1PA7 6471 + 341 6465 3264 526 0 1 151 0 10 116 9 3 120 5 4 163 6 7 55 13 25 40 6 7 200 14 14 299 0 1 210 0 5 275 0 2 240 2 0 25 2 0 6 0 2 391 0 4 451 9 0 8 4 13 222 6 0 87 0 3 304 1 0 442 0 1 140 2 1 40 1 0 236 2 0 423 0 3 21 0 1 321 2 0 353 5 6 140 2 0 6 chain 3033 chr6 170805979 + 82532249 82532286 MLT2D 439 + 391 428 99474 37 chain 14890 chr6 170805979 + 82547642 82547821 L1PA4 6152 + 3816 3996 62401 122 0 1 57 chain 119485 chr6 170805979 + 82547821 82549176 L1PA4 6152 + 3999 5351 15611 1010 7 4 338 chain 551402 chr6 170805979 + 82558403 82564423 L1PA2 6032 + 4 6032 644 251 2 1 577 0 4 4095 0 5 1095 chain 482480 chr6 170805979 + 82632785 82638205 L1PA3long 6157 + 20 6157 3581 74 0 526 152 4 132 141 0 1 505 0 58 972 0 3 2855 0 1 717 chain 5021 chr6 170805979 + 82642994 82643111 L1PB1 5432 + 5113 5220 85557 25 1 0 4 3 2 14 4 1 9 12 10 6 3 0 36 chain 6832 chr6 170805979 + 82648159 82648235 L1PA7 6471 + 3125 3201 78192 76 chain 270253 chr6 170805979 + 82648235 82651494 L1PA7 6471 + 3202 6470 7700 276 1 0 115 0 1 88 0 1 242 0 1 188 0 6 7 5 6 1065 0 3 4 1 0 6 0 1 409 0 3 78 1 0 428 4 1 43 5 4 142 0 1 95 20 20 29 2 0 5 chain 65648 chr6 170805979 + 82673199 82674207 L1PB1 5432 + 4446 5423 25044 29 3 9 137 0 1 85 0 1 90 1 0 207 6 0 98 1 0 10 2 1 24 1 0 6 1 0 10 12 8 6 2 0 48 8 7 13 1 0 22 3 4 19 6 5 10 1 0 4 18 8 18 3 1 5 1 0 14 2 0 24 1 0 22 3 2 10 1 0 10 1 0 9 chain 490577 chr6 170805979 + 82715215 82720870 L1PA4 6152 + 1 6143 3406 574 1 0 661 0 1 691 0 1 172 0 1 8 0 2 82 1 0 235 0 3 520 0 1 317 0 10 185 0 483 738 1 0 143 0 10 338 32 6 200 0 1 156 0 3 600 chain 161148 chr6 170805979 + 82757907 82759738 L1PA5 6144 + 4045 5879 11671 855 0 4 390 1 0 585 chain 7914 chr6 170805979 + 82780253 82780350 MSTD-int 1705 + 12 109 75084 97 chain 18346 chr6 170805979 + 82790831 82791062 MER75B 242 + 0 231 58308 18 3 4 179 1 0 30 chain 54691 chr6 170805979 + 82815282 82815921 L1PA7 6471 + 4982 5621 27977 639 chain 6951 chr6 170805979 + 82815921 82816004 L1PA7 6471 + 5624 5707 77767 83 chain 50222 chr6 170805979 + 82816006 82816607 L1PA7 6471 + 5707 6308 29476 566 9 7 5 0 2 21 chain 12748 chr6 170805979 + 82816608 82816758 L1PA7 6471 + 6310 6460 65527 150 chain 51155 chr6 170805979 + 82827837 82828476 L1PA8 5853 + 5215 5853 29180 6 0 6 337 1 0 45 2 0 69 12 10 52 2 1 19 2 1 92 chain 452445 chr6 170805979 + 82851941 82857086 L1PA4 6152 + 1 6152 4320 95 0 996 1361 0 15 76 0 2 62 22 13 1128 1 0 537 0 2 674 0 1 1189 chain 41309 chr6 170805979 + 82873137 82873675 MLT2A2 560 + 0 560 33781 179 2 1 219 0 21 11 2 4 125 chain 4493 chr6 170805979 + 82873675 82873730 MER31B 477 + 328 383 88371 55 chain 83486 chr6 170805979 + 82897863 82898834 L1PA7 6471 + 5492 6467 20916 126 1 3 260 0 1 257 0 1 327 chain 103994 chr6 170805979 + 82922454 82923722 L1PA7 6471 + 5182 6468 17822 181 0 1 30 0 15 208 0 7 674 7 0 6 4 5 108 1 2 49 chain 42308 chr6 170805979 + 82950580 82951209 L1MA3 4352 + 3706 4311 33185 387 38 11 7 0 8 60 1 0 81 2 0 15 9 8 5 1 0 23 chain 24550 chr6 170805979 + 82965310 82965603 AluSp 311 + 9 302 49947 293 chain 12797 chr6 170805979 + 83023525 83023864 L1PB1 5432 + 5108 5423 65444 6 3 0 24 1 0 6 1 0 16 4 0 8 2 0 52 2 1 9 7 6 44 1 0 16 13 8 9 7 0 13 25 21 23 1 0 4 9 17 13 6 5 14 chain 32804 chr6 170805979 + 83030594 83031598 THE1B-int 1605 + 0 1334 39663 68 2 1 27 47 0 17 10 14 243 432 862 33 57 1 68 chain 14284 chr6 170805979 + 83103158 83103474 L1PB1 5432 + 5134 5422 63213 10 1 0 14 16 10 52 2 1 12 9 8 28 0 1 11 1 0 14 45 32 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 91425 chr6 170805979 + 83206559 83207941 L1PA14 3548 + 2164 3484 19430 372 1 0 84 5 2 8 0 3 56 1 0 249 3 1 14 2 0 27 18 18 7 2 0 107 10 6 13 2 0 6 1 0 84 1 0 110 1 0 11 31 1 33 5 3 14 1 0 5 4 3 12 3 5 39 13 1 7 1 0 19 chain 6640 chr6 170805979 + 83222737 83222847 LTR40a 516 + 395 509 78841 40 19 23 51 chain 27581 chr6 170805979 + 83248493 83248877 THE1D 372 + 7 372 45479 68 19 0 116 0 3 123 2 0 19 2 1 35 chain 66383 chr6 170805979 + 83256410 83257201 L1PA7 6471 + 5680 6469 24849 23 1 0 589 1 0 177 chain 87710 chr6 170805979 + 83282126 83283587 L1PA8 5853 + 4705 5853 20093 5 0 2 7 0 1 5 1 0 104 0 1 175 0 1 4 6 4 70 1 4 144 0 1 290 312 0 41 1 0 44 2 0 71 12 10 50 5 4 13 6 5 92 chain 19514 chr6 170805979 + 83283676 83284187 L1PA15-16 3068 + 691 2574 57002 93 0 1419 11 4 5 30 9 7 22 3 0 23 1 0 7 2 0 38 5 0 12 130 102 17 1 0 13 1 0 8 1 0 8 4 3 41 1 0 6 1 0 12 1 0 6 chain 47597 chr6 170805979 + 83300649 83301206 L1PA5 6144 + 5586 6144 30439 215 4 5 338 chain 131776 chr6 170805979 + 83317303 83319313 L1PA3long 6157 + 4139 6157 13845 373 0 8 1637 chain 514517 chr6 170805979 + 83320872 83328469 L1PA7 6471 + 16 6466 2544 266 1 0 297 1 7 84 47 0 10 0 47 1309 0 1 294 6 7 110 0 2 40 7 6 145 38 5 130 0 1 772 0 4 53 1 0 78 0 2 8 12 0 135 17 0 51 4 0 161 6 7 4 1 0 45 0 2 915 35 0 235 0 11 23 1 0 162 0 1 96 0 1 59 0 4 14 2 0 6 0 1 36 0 1 37 0 2 150 2 0 120 1081 0 371 0 2 111 0 1 8 chain 76484 chr6 170805979 + 83326904 83327956 MER11C 1089 + 0 1063 22441 247 7 16 54 7 6 63 1 0 177 40 39 88 1 5 4 1 0 38 0 1 127 0 1 54 10 9 108 0 1 25 chain 22666 chr6 170805979 + 83332224 83332541 L1PB3 3668 + 3162 3475 52871 21 2 0 21 2 3 84 1 0 100 1 0 49 1 0 35 chain 566988 chr6 170805979 + 83333952 83339981 L1HS 6032 + 0 6030 40 736 0 1 5293 chain 50869 chr6 170805979 + 83341680 83342343 MER51A 677 + 0 641 29250 152 0 1 23 17 0 23 10 0 152 0 1 262 0 3 24 chain 32641 chr6 170805979 + 83357516 83358014 MLT2A1 477 + 0 477 39822 168 9 6 5 0 1 24 0 1 180 75 55 37 chain 461881 chr6 170805979 + 83358053 83364004 HERVL-int 5654 + 0 5654 4082 648 1 0 7 0 1 153 364 0 606 0 1 170 0 31 446 7 16 45 1 0 126 0 4 206 6 0 177 0 1 344 0 1 649 0 5 214 0 6 92 1 5 86 7 6 711 0 6 520 0 3 172 8 12 184 chain 32926 chr6 170805979 + 83364004 83364446 MLT2A1 477 + 0 477 39568 169 4 1 9 0 1 23 0 1 21 2 0 39 1 2 133 3 41 33 1 0 4 chain 83696 chr6 170805979 + 83441655 83442578 L1PA3long 6157 + 5229 6156 20871 81 0 4 842 chain 323706 chr6 170805979 + 83445880 83449763 HERV17-int 4347 + 13 4347 6343 13 2 1 52 1 0 33 2 0 20 8 7 188 1 431 153 6 9 118 0 1 121 0 1 97 0 19 74 1 2 65 0 1 45 8 6 356 0 2 801 0 1 14 2 0 13 0 1 247 1 0 930 1 0 128 18 19 130 0 1 234 chain 25990 chr6 170805979 + 83450076 83450390 LTR17 781 + 0 326 47727 163 0 12 11 2 0 108 0 2 30 chain 364888 chr6 170805979 + 83495670 83499984 L1P1 4361 + 4 4328 5736 557 6 5 1243 0 2 128 0 1 37 6 8 321 1 2 1387 9 17 436 1 0 6 1 2 149 1 0 6 2 0 17 chain 157946 chr6 170805979 + 83500000 83501791 L1PA5 6144 + 4345 6138 11884 313 1 0 617 0 4 12 0 4 106 0 1 218 6 0 518 chain 223457 chr6 170805979 + 83533070 83535713 L1PA5 6144 + 3503 6144 8946 47 9 0 95 0 9 506 0 1 1318 1 0 161 2 0 170 0 1 191 1 0 142 chain 140666 chr6 170805979 + 83544591 83546209 L1PA5 6144 + 1327 2931 13047 676 17 1 239 0 2 686 chain 428321 chr6 170805979 + 83546352 83568470 L1PA5 6144 + 4 6109 4772 109 7 21 77 1 0 118 77 50 84 19 0 51 35 36 18 2 1 12 84 8 149 42 21 33 19 36 81 9 13 30 25 0 213 13 4 854 5 4 48 7 19 81 6 5 14 0 2 108 6 0 34 23 4 235 1 0 4 0 1 247 0 1 340 0 1 78 2 1 250 1 0 35 8 9 323 8 7 375 0 1 92 0 8 270 2 1 522 15871 0 212 0 4 133 0 2 615 chain 13258 chr6 170805979 + 83551642 83551818 L1PA5 6144 + 5151 5339 64692 72 1 9 39 1 5 63 chain 13808 chr6 170805979 + 83567347 83567506 L1PA5 6144 + 4976 5138 63873 59 1 4 99 chain 25616 chr6 170805979 + 83569626 83569976 THE1B 368 + 0 366 48288 44 0 15 19 0 1 93 1 0 115 19 20 59 chain 31042 chr6 170805979 + 83571403 83571778 THE1B-int 1605 + 1221 1595 41094 21 1 0 353 chain 26262 chr6 170805979 + 83571788 83572132 THE1B 368 + 0 368 47332 40 0 15 112 6 5 106 0 10 80 chain 17703 chr6 170805979 + 83633909 83634111 L1PA4 6152 + 5948 6151 59003 46 0 1 156 chain 86418 chr6 170805979 + 83667763 83668737 L1PA5 6144 + 5066 6042 20338 360 0 1 559 4 5 51 chain 16698 chr6 170805979 + 83728840 83729033 L1PA7 6471 + 6115 6307 60153 141 1 0 51 chain 13023 chr6 170805979 + 83729036 83729197 L1PA7 6471 + 6308 6466 65084 153 3 0 5 chain 11468 chr6 170805979 + 83733651 83733854 L1MB5 1630 + 1252 1460 67799 108 42 47 53 chain 165429 chr6 170805979 + 83745569 83748517 L1PB1 5432 + 2877 5426 11384 225 0 1 444 32 31 151 1 3 210 2 1 17 6 7 17 6 2 78 6 0 273 0 2 47 0 2 75 109 7 74 1 0 85 9 6 50 0 1 108 32 35 208 355 91 6 1 0 10 1 0 11 10 6 8 2 0 51 18 16 15 67 57 17 2 0 7 2 1 13 2 0 24 1 0 23 1 0 7 9 8 10 1 0 8 chain 8298 chr6 170805979 + 83891246 83891351 Tigger1 2417 + 2298 2411 74164 57 0 8 48 chain 511170 chr6 170805979 + 83942179 83948513 L1PA7 6471 + 3 6461 2702 189 9 20 200 1 2 349 0 2 308 0 1 194 21 19 217 1 8 121 0 2 167 3 26 163 0 2 42 1 0 606 1 0 65 0 4 25 1 6 92 5 9 257 1 5 681 1 0 494 0 3 387 0 8 126 0 5 55 0 3 89 1 0 322 0 1 29 0 5 158 0 6 146 1 6 11 2 0 61 0 20 50 5 6 15 1 0 21 0 2 290 0 1 107 0 2 179 0 1 20 0 4 43 chain 124193 chr6 170805979 + 83964121 83965704 THE1A-int 1579 + 0 1577 14815 20 6 7 99 0 2 318 1 0 5 0 1 181 28 19 511 0 1 301 1 0 112 chain 39869 chr6 170805979 + 83976822 83977337 LTR10F 562 + 0 554 34763 194 7 0 23 1 15 9 0 24 33 7 1 152 0 14 89 chain 165848 chr6 170805979 + 83981885 83984706 MER57-int 2662 + 40 2499 11343 30 45 30 8 1 0 70 380 0 9 0 1 52 0 4 70 2 0 79 0 37 64 0 1 324 2 0 79 25 29 166 4 0 140 29 31 76 1 0 49 0 1 16 1 0 137 74 79 83 3 1 135 17 0 64 8 4 106 1 2 18 23 39 90 0 2 258 18 12 53 2 0 5 0 1 4 chain 88865 chr6 170805979 + 83995181 83996240 MER11B 1079 + 0 1064 19880 225 0 5 34 3 0 94 0 5 406 6 0 214 0 2 10 0 2 67 chain 4380 chr6 170805979 + 84005338 84005390 MLT1A1 405 + 292 344 89002 52 chain 31504 chr6 170805979 + 84032125 84032535 L1PA8 5853 + 5442 5847 40731 122 1 0 41 4 3 71 1 0 61 2 1 19 3 2 85 chain 14395 chr6 170805979 + 84044950 84045179 MER2 342 + 93 322 63040 24 1 0 4 16 15 158 5 7 21 chain 14990 chr6 170805979 + 84073784 84074004 MER30 238 + 0 238 62278 15 0 18 68 21 0 15 0 24 52 3 0 46 chain 9854 chr6 170805979 + 84081926 84082047 THE1D 372 + 251 372 70713 121 chain 5113 chr6 170805979 + 84120895 84120959 MER33 330 + 31 95 85089 64 chain 8935 chr6 170805979 + 84146928 84147106 L1MA4A 3247 + 3018 3185 72703 87 3 2 9 39 32 31 3 0 6 chain 7321 chr6 170805979 + 84156809 84156918 L1PB4 2604 + 2427 2544 76597 58 8 14 38 0 2 5 chain 80041 chr6 170805979 + 84163844 84164861 L1PA8 5853 + 4836 5853 21619 37 6 5 133 0 2 100 0 1 45 0 1 293 0 3 106 1 0 46 2 0 69 6 5 11 1 0 17 0 1 29 2 1 19 2 1 92 chain 160687 chr6 170805979 + 84179670 84181499 L1PA5 6144 + 3308 5130 11704 201 1 0 1142 8 0 122 1 2 30 5 6 319 chain 139238 chr6 170805979 + 84189186 84190814 LTR12C 1709 + 0 1709 13167 309 0 1 4 1 0 506 0 40 109 0 41 101 1 0 5 3 1 107 0 4 241 1 0 240 chain 301402 chr6 170805979 + 84204236 84207723 L1PA6 6164 + 2658 6161 6791 526 5 6 82 0 5 97 6 5 36 0 1 282 3 0 45 0 8 628 0 1 1194 0 3 254 0 1 329 chain 272008 chr6 170805979 + 84236378 84239636 L1PA7 6471 + 3111 6464 7656 216 0 65 157 0 4 167 1 2 731 1 11 58 0 1 266 0 1 155 5 4 328 1 2 194 0 5 124 0 4 8 0 4 85 0 1 232 0 1 360 10 17 6 6 0 139 3 0 5 chain 6802 chr6 170805979 + 84299710 84299828 MER57B1 401 + 234 343 78313 13 20 0 8 1 0 32 0 12 44 chain 19023 chr6 170805979 + 84396789 84397020 L1PA7 6471 + 6237 6468 57525 69 1 0 6 1 0 144 0 2 10 chain 67270 chr6 170805979 + 84436136 84436950 L1PA8 5853 + 5044 5853 24631 36 0 2 482 1 0 46 2 0 70 1 0 8 1 0 52 2 1 19 1 0 93 chain 51831 chr6 170805979 + 84451680 84452282 L1PA5 6144 + 5537 6144 28930 274 3 8 325 chain 89527 chr6 170805979 + 84475687 84476868 L1PA4 6152 + 4355 5516 19755 94 20 0 1067 chain 7848 chr6 170805979 + 84497546 84497678 L1PA8 5853 + 5633 5762 75259 38 2 0 5 12 12 52 2 1 21 chain 8282 chr6 170805979 + 84505830 84505926 THE1B-int 1605 + 1487 1596 74211 14 0 13 82 chain 436377 chr6 170805979 + 84540510 84545775 L1PA7 6471 + 0 6461 4639 80 0 2 167 42 27 127 1 2 418 0 8 1808 0 2 442 0 1196 345 1 0 318 8 7 247 0 1 193 0 2 228 2 1 82 0 1 416 0 1 340 chain 6666 chr6 170805979 + 84561846 84561962 L1MA3 4352 + 2447 2555 78748 7 0 1 56 20 11 33 chain 12226 chr6 170805979 + 84577931 84578121 Tigger3a 397 + 158 323 66426 63 0 1 15 28 0 79 0 2 5 chain 123950 chr6 170805979 + 84585505 84586912 L1PA4 6152 + 4735 6151 14857 755 1 4 182 0 2 42 0 1 96 1 2 184 0 2 146 chain 107602 chr6 170805979 + 84587250 84588767 LTR12C 1709 + 0 1709 17378 300 1 2 36 3 46 80 0 1 22 4 5 44 6 1 118 0 278 143 0 1 35 1 0 6 2 0 106 0 4 158 149 21 111 1 0 191 chain 241141 chr6 170805979 + 84602211 84604963 L1PA5 6144 + 3383 6135 8449 4 0 1 25 1 0 1408 10 10 1304 chain 563425 chr6 170805979 + 84608436 84614463 L1HS 6032 + 0 6032 124 2387 0 1 2794 0 4 846 chain 545821 chr6 170805979 + 84626355 84632366 L1PA2 6032 + 2 6032 981 453 0 1 247 1 8 1056 1 10 86 1 0 1224 1 0 2095 0 4 846 chain 538154 chr6 170805979 + 84699337 84705481 L1PA4 6152 + 3 6143 1444 533 4 0 340 0 1 359 1 0 309 12 0 440 1 0 635 0 5 452 0 1 438 1 0 96 0 2 429 0 1 245 0 1 988 0 4 861 chain 6566 chr6 170805979 + 84726800 84726884 MSTC 436 + 0 88 79095 14 0 4 70 chain 29839 chr6 170805979 + 84726896 84727305 L1PA8 5853 + 5451 5853 42194 22 0 1 59 1 0 29 1 0 46 2 0 70 2 1 8 2 0 5 0 1 43 7 6 18 1 0 93 chain 4797 chr6 170805979 + 84746718 84746774 U6 107 + 6 62 86713 56 chain 21773 chr6 170805979 + 84788210 84788623 L1PB1 5432 + 5043 5422 54135 61 3 1 9 1 0 24 1 0 9 1 0 11 5 1 9 2 0 52 2 1 16 1 0 44 6 6 9 3 0 6 16 6 19 7 4 15 2 0 24 1 0 21 1 0 13 1 0 18 chain 23155 chr6 170805979 + 84796340 84796658 THE1B 368 + 0 324 52136 44 0 6 6 0 9 107 8 7 16 8 0 129 chain 31653 chr6 170805979 + 84823320 84823752 MLT2A1 477 + 2 470 40621 140 0 1 25 2 6 150 1 0 61 17 49 36 chain 22863 chr6 170805979 + 84834820 84835175 THE1D 372 + 0 372 52555 56 4 19 25 3 4 62 27 30 29 1 0 111 2 1 35 chain 2985 chr6 170805979 + 84837265 84837304 MADE1 96 - 3 83 100006 30 0 41 9 chain 3316 chr6 170805979 + 84858127 84858163 MIRb 242 + 25 61 96872 36 chain 24840 chr6 170805979 + 84890747 84891020 L1PA3long 6157 + 5884 6157 49532 273 chain 479058 chr6 170805979 + 84935930 84942118 L1PA6 6164 + 0 6147 3656 335 99 80 6 6 0 29 19 0 116 79 3 150 19 34 52 1 18 209 0 1 219 5 12 297 1 2 77 5 12 568 0 1 52 2 10 51 1 0 856 0 1 248 9 13 59 12 13 148 0 9 27 2 0 295 0 8 1991 2 3 10 0 1 131 chain 41307 chr6 170805979 + 84944217 84944670 HERV17-int 4347 + 3894 4347 33785 453 chain 29096 chr6 170805979 + 84944984 84945310 LTR17 781 + 0 326 43193 326 chain 28474 chr6 170805979 + 84955926 84956307 THE1B-int 1605 + 0 429 44166 49 0 14 111 0 24 32 5 11 101 0 2 63 0 2 20 chain 11791 chr6 170805979 + 84981470 84981604 L1PA6 6164 + 1429 1563 67230 134 chain 354280 chr6 170805979 + 84981605 84985855 L1PA6 6164 + 1565 5992 5866 262 0 2 505 9 6 721 33 31 104 0 1 389 0 1 111 3 0 782 0 159 229 0 1 377 0 16 51 0 3 77 1 0 112 0 1 4 0 1 383 0 1 97 chain 12380 chr6 170805979 + 84985868 84986017 L1PA6 6164 + 6007 6154 66177 11 2 0 136 chain 4559 chr6 170805979 + 84987319 84987369 L1PA11 4918 + 770 820 88023 50 chain 258740 chr6 170805979 + 84987941 84993023 L1PA11 4918 + 3 4578 8004 39 4 3 33 4 1 25 2 0 12 0 2 12 7 5 46 1 0 32 2 0 5 2 1 87 0 1 44 0 5 46 8 10 102 1 3 11 19 19 319 1 0 169 7 8 173 0 2 16 0 2 172 2 1 65 1192 815 80 304 0 32 0 1 143 6 10 111 0 2 174 3 4 729 6 12 31 24 209 28 0 1 367 1 0 19 1 0 6 0 1 5 0 1 73 7 0 62 7 6 10 3 0 66 2 0 17 1 0 19 4 0 9 7 3 10 13 9 15 1 0 13 2 0 11 chain 35139 chr6 170805979 + 84993672 84994045 L1PA2 6032 + 5643 6016 37933 373 chain 13669 chr6 170805979 + 84999658 84999842 MER61A 341 + 0 183 64057 22 15 14 147 chain 24506 chr6 170805979 + 85008666 85009068 MSTA 426 + 0 407 50008 99 0 15 3 10 0 16 1 0 11 7 11 50 3 1 18 35 33 4 0 1 145 chain 16186 chr6 170805979 + 85014007 85014187 L1PA4 6152 + 5971 6151 60769 180 chain 30363 chr6 170805979 + 85020714 85021080 L1PA8A 6298 + 5917 6287 41703 35 0 4 331 chain 12116 chr6 170805979 + 85024621 85024865 L1PB1 5432 + 5170 5392 66642 47 21 19 45 1 0 7 4 0 8 21 12 18 3 1 5 1 0 14 2 0 24 1 0 22 chain 26725 chr6 170805979 + 85036206 85036501 AluYb8 318 + 0 294 46649 150 1 0 144 chain 7155 chr6 170805979 + 85043527 85043614 MLT1C 463 + 348 439 77083 6 0 4 81 chain 93392 chr6 170805979 + 85045147 85046279 L1PA7 6471 + 5308 6470 19129 264 0 24 24 8 12 263 1 3 572 chain 165385 chr6 170805979 + 85070051 85072367 L1PA7 6471 + 4471 6468 11386 807 308 0 309 4 0 34 1 0 22 10 3 52 4 6 552 0 1 202 2 0 9 chain 4506 chr6 170805979 + 85082438 85082502 L1PB3 3668 + 3504 3566 88287 24 3 1 37 chain 9237 chr6 170805979 + 85084844 85084956 L1PA8A 6298 + 6179 6291 72041 112 chain 18704 chr6 170805979 + 85092964 85093300 HERV9-int 5642 + 5338 5642 57893 119 5 3 25 0 2 10 3 1 26 7 6 55 1 0 13 27 5 19 9 3 17 chain 33580 chr6 170805979 + 85128308 85128841 MLT2A1 477 + 0 477 39020 149 3 4 15 5 2 9 0 1 23 1 2 180 4 0 8 8 0 9 64 20 55 chain 65259 chr6 170805979 + 85154045 85154749 L1PA3long 6157 + 5438 6142 25115 704 chain 186578 chr6 170805979 + 85187150 85189748 L1PBa1 4058 + 11 2665 10269 24 2 1 11 4 2 6 1 0 37 1 23 316 3 1 81 3 4 45 7 6 50 14 13 332 33 33 232 0 1 75 0 14 45 0 24 55 10 8 26 1 18 147 0 4 7 3 0 10 1 0 155 3 1 137 15 11 472 1 2 27 9 1 197 chain 15101 chr6 170805979 + 85189750 85190076 L1PB1 5432 + 5107 5400 62151 7 5 0 24 1 0 9 25 20 53 2 1 18 2 1 40 1 0 16 25 13 18 11 8 11 2 0 24 1 0 21 1 0 9 chain 68648 chr6 170805979 + 85198384 85199287 L1PA8 5853 + 4957 5853 24298 51 1 0 6 0 1 547 1 0 48 2 0 58 12 11 12 2 1 17 33 32 19 1 0 93 chain 6540 chr6 170805979 + 85200184 85200259 L1PA7 6471 + 2082 2157 79190 75 chain 470038 chr6 170805979 + 85202003 85208119 L1PA6 6164 + 0 6142 3855 394 20 21 34 19 0 66 9 15 37 1 0 8 5 6 206 0 17 232 6 7 380 0 1 37 2 1 833 0 10 29 1 0 256 9 12 572 2 0 13 4 5 28 1 2 50 1 2 32 5 4 213 1 0 171 17 5 33 13 14 24 5 6 87 0 1 353 0 4 457 0 1 109 0 2 85 0 1 245 0 1 130 0 1 64 0 3 68 0 1 316 0 2 186 7 8 74 8 8 19 2 0 11 1 4 125 chain 56183 chr6 170805979 + 85208119 85208728 L1PA3long 6157 + 5548 6157 27514 609 chain 346879 chr6 170805979 + 85213639 85217943 L1PA7 6471 + 2149 6454 5952 324 0 1 150 0 8 7 9 0 439 11 11 13 1 3 416 0 1 11 5 0 207 0 1 95 9 8 165 0 2 142 0 1 852 0 1 610 1 4 6 4 0 827 chain 8080 chr6 170805979 + 85289069 85289158 L1PA6 6164 + 4979 5068 74673 89 chain 92421 chr6 170805979 + 85289158 85290227 L1PA6 6164 + 5076 6162 19284 196 1 0 573 0 21 288 3 0 8 chain 4157 chr6 170805979 + 85290988 85291032 L1PA6 6164 + 5801 5845 90412 44 chain 11652 chr6 170805979 + 85291032 85291168 L1PA6 6164 + 5866 6002 67477 136 chain 549219 chr6 170805979 + 85307045 85313198 L1PA3long 6157 + 6 6157 798 551 0 1 426 0 1 1393 8 0 1916 0 1 1392 1 3 213 1 2 252 chain 138307 chr6 170805979 + 85325797 85327451 LTR12C 1709 + 0 1709 13237 291 1 11 126 8 9 226 0 1 146 1 41 61 0 2 197 1 0 5 3 1 107 0 4 481 chain 92111 chr6 170805979 + 85335132 85336207 L1PA6 6164 + 5094 6158 19323 221 1 0 823 12 2 18 chain 69853 chr6 170805979 + 85338013 85338785 L1PA4 6152 + 5379 6151 24029 772 chain 73083 chr6 170805979 + 85356509 85357313 L1PA3long 6157 + 5353 6157 23304 804 chain 129320 chr6 170805979 + 85366966 85368407 L1PA3long 6157 + 2548 3989 14111 1441 chain 243204 chr6 170805979 + 85377220 85380046 L1P1 4361 + 12 2842 8399 40 0 4 2786 chain 69204 chr6 170805979 + 85380093 85380901 L1PA5 6144 + 5334 6144 24175 648 5 0 8 0 5 135 1 3 11 chain 20194 chr6 170805979 + 85380911 85381178 L1PA8 5853 + 5585 5847 56147 24 2 0 70 1 0 61 2 1 19 1 0 87 chain 28081 chr6 170805979 + 85381250 85381572 AluYk11 308 + 0 307 44745 300 15 0 7 chain 25598 chr6 170805979 + 85396824 85397138 L1PA15 4387 + 2848 3166 48319 137 0 3 144 0 1 33 chain 30644 chr6 170805979 + 85404290 85404719 LTR7B 505 + 0 505 41433 48 0 1 59 0 10 57 0 38 12 3 27 26 0 2 82 1 0 29 5 8 42 14 13 51 chain 12124 chr6 170805979 + 85430569 85430705 L1PA7 6471 + 6001 6137 66619 136 chain 26003 chr6 170805979 + 85430709 85431036 L1PA7 6471 + 6140 6469 47713 316 0 2 11 chain 29570 chr6 170805979 + 85434593 85434912 AluYb8 318 + 0 316 42522 132 3 0 184 chain 40547 chr6 170805979 + 85437215 85437758 MER41A 554 + 0 547 34270 87 5 6 75 1 2 18 0 1 241 5 6 111 chain 244741 chr6 170805979 + 85582430 85585394 L1PA7 6471 + 3463 6469 8358 21 7 2 34 8 3 21 0 4 30 0 3 151 0 6 348 1 16 266 0 6 257 0 1 44 1 5 274 3 1 43 0 1 442 0 1 178 1 0 464 0 30 8 16 0 157 1 0 92 0 1 96 chain 24054 chr6 170805979 + 85588300 85588575 AluYk4 311 + 9 281 50722 117 4 0 134 0 1 20 chain 14143 chr6 170805979 + 85649220 85649409 L1MC2 1988 + 1476 1664 63391 155 1 0 33 chain 3266 chr6 170805979 + 85666878 85666913 MER2B 336 + 163 198 97322 35 chain 39757 chr6 170805979 + 85717613 85718051 L1PA3long 6157 + 5711 6149 34848 438 chain 29240 chr6 170805979 + 85732424 85732737 L1PA2 6032 + 5719 6032 42979 313 chain 5852 chr6 170805979 + 85745875 85745947 MLT2A2 560 + 488 560 81687 72 chain 279397 chr6 170805979 + 85751663 85755015 L1P2 5180 + 2 3377 7436 148 2 1 21 0 1 21 1 0 49 1 0 165 0 4 6 10 6 91 1 0 272 0 15 266 0 1 147 2 3 197 0 1 53 0 1 112 0 3 731 2 1 308 0 5 746 chain 59710 chr6 170805979 + 85781135 85781799 SVA_C 1631 + 968 1628 26458 50 1 0 596 3 0 14 chain 33637 chr6 170805979 + 85808587 85809294 MLT2A1 477 + 0 476 38972 168 5 2 9 0 1 17 0 10 98 273 0 77 4 38 56 chain 2762 chr6 170805979 + 85808995 85809034 MLT2A1 477 + 430 469 101896 6 1 0 4 0 1 28 chain 520836 chr6 170805979 + 85815992 85822081 L1PA4 6152 + 54 6152 2233 1386 0 1 230 2 1 714 2 6 370 0 1 399 2 3 18 1 0 501 4 1 249 4 5 415 0 4 96 0 3 207 0 1 1232 0 1 242 3 0 12 chain 142504 chr6 170805979 + 85837972 85839700 SVA_D 2077 + 58 2065 12891 400 0 39 186 0 1 168 40 0 64 5 42 75 16 15 5 0 2 37 0 1 25 0 205 35 1 50 649 14 0 8 chain 3313 chr6 170805979 + 85838726 85838766 SVA_D 2077 + 772 812 75824 40 chain 148512 chr6 170805979 + 85897142 85899200 MER4-int 2692 + 579 2692 12455 135 7 6 87 4 6 42 0 5 66 4 3 79 7 9 295 2 0 111 5 6 26 18 20 163 0 2 112 1 3 134 1 0 56 0 4 30 0 1 21 11 24 116 0 2 118 16 23 25 0 4 153 3 2 89 1 16 10 1 0 109 chain 85725 chr6 170805979 + 85909275 85910296 L1PA6 6164 + 5134 6162 20497 180 0 8 832 1 0 8 chain 5665 chr6 170805979 + 85923687 85923754 LTR41 747 + 661 729 82487 55 0 1 12 chain 162183 chr6 170805979 + 85950228 85952174 L1PA7 6471 + 4506 6454 11599 165 0 4 279 0 1 666 5 0 423 0 1 91 0 1 170 0 7 7 7 0 133 chain 4225 chr6 170805979 + 85978136 85978270 L1PA15-16 3068 + 226 367 89976 22 3 1 10 53 64 29 2 0 15 chain 97500 chr6 170805979 + 85985714 85986769 L1PA2 6032 + 4197 5252 18589 1055 chain 4257 chr6 170805979 + 86006624 86006669 L1P1 4361 - 146 191 89771 45 chain 195488 chr6 170805979 + 86006671 86008944 L1P1 4361 + 1784 4056 9864 594 0 4 832 11 5 344 0 1 492 chain 76140 chr6 170805979 + 86018217 86019245 MER11A 1151 + 0 1151 22528 45 10 109 76 1 0 43 0 7 14 4 0 11 0 2 136 0 1 94 0 1 145 0 1 128 16 49 24 23 5 29 0 1 60 6 7 163 chain 220284 chr6 170805979 + 86033062 86035921 L1PA7 6471 + 3700 6466 9036 304 10 0 200 0 1 76 1 2 33 0 4 161 0 4 187 0 8 151 116 0 257 0 6 308 0 2 208 2 1 11 0 5 64 5 7 104 0 1 661 chain 34579 chr6 170805979 + 86040113 86040510 L1PA3long 6157 + 5757 6156 38300 392 0 2 5 chain 6860 chr6 170805979 + 86117709 86117803 MADE1 96 + 1 96 78101 46 2 3 46 chain 79106 chr6 170805979 + 86138634 86139900 L1PB1 5432 + 4211 5427 21837 123 0 1 10 0 1 31 0 3 5 10 6 81 14 14 146 12 8 36 15 18 406 15 0 14 1 0 24 1 0 5 4 3 12 15 9 52 3 2 16 1 0 43 1 0 16 3 0 6 16 6 19 2 0 5 1 0 14 2 0 24 1 0 17 14 13 4 1 0 18 2 0 5 chain 3558 chr6 170805979 + 86143245 86143289 MLT1D 503 + 459 502 94765 33 1 0 10 chain 51213 chr6 170805979 + 86146713 86147338 LTR14B 630 + 0 630 29163 541 6 11 78 chain 43117 chr6 170805979 + 86172185 86172719 MLT2A2 560 + 0 545 32703 402 1 12 131 chain 34893 chr6 170805979 + 86205004 86205382 L1PA2 6032 + 5653 6031 38096 378 chain 13729 chr6 170805979 + 86210250 86210433 L1PA8A 6298 + 5998 6185 63977 60 8 12 115 chain 165590 chr6 170805979 + 86210960 86212788 L1PA3long 6157 + 4328 6157 11363 157 0 1 1671 chain 7128 chr6 170805979 + 86226242 86226319 L1P1 4361 + 2696 2773 77168 77 chain 500540 chr6 170805979 + 86236220 86243158 L1PA7 6471 + 0 6469 3109 244 6 12 147 2 0 92 29 29 83 18 19 758 2 3 70 0 9 26 0 1 266 0 1 256 150 0 125 0 1 220 0 1 157 0 2 14 5 10 59 1 0 27 0 2 284 7 8 170 0 4 122 8 9 93 1 2 158 1 2 17 1 0 77 0 5 238 7 8 39 0 1 334 0 1 81 0 1 381 0 8 141 0 4 126 2 1 20 11 12 633 0 3 354 372 0 160 0 1 92 11 7 82 0 1 145 3 0 10 chain 9575 chr6 170805979 + 86238237 86238365 L1PA7 6471 + 2029 2154 71315 28 3 0 97 chain 20552 chr6 170805979 + 86253407 86253650 L1P1 4361 + 55 298 55710 243 chain 4443 chr6 170805979 + 86319727 86319781 MER57B1 401 + 0 54 88638 54 chain 166542 chr6 170805979 + 86323201 86325920 MER57-int 2662 + 41 2658 11303 29 45 30 8 1 0 46 5 6 17 0 13 115 1 3 5 2 0 138 5 1 229 3 4 128 2 0 85 17 21 164 12 8 103 4 11 5 7 0 12 8 5 22 1 18 7 10 0 95 4 6 22 3 2 100 0 16 9 19 4 178 1 0 86 0 1 30 35 18 15 0 2 50 3 0 419 8 7 90 23 17 44 181 108 32 3 0 33 chain 4939 chr6 170805979 + 86348056 86348193 L1MA3 4352 + 3106 3250 85936 16 3 8 11 40 41 44 2 3 21 chain 448971 chr6 170805979 + 86392603 86397932 L1PA5 6144 + 0 5336 4411 27 0 1 92 0 14 894 1 2 4 1 0 133 9 0 470 0 1 672 1 0 119 0 9 283 6 7 429 0 1 12 1 0 839 2 0 450 7 0 877 chain 28145 chr6 170805979 + 86452450 86452801 THE1A 353 + 2 353 44644 82 0 1 25 1 0 243 chain 74601 chr6 170805979 + 86452802 86453770 THE1A-int 1579 + 1 1574 22933 167 8 9 89 1 3 185 8 8 252 0 602 258 chain 57037 chr6 170805979 + 86465046 86465793 L1PA8 5853 + 5113 5853 27256 451 2 1 45 2 0 68 13 11 51 2 1 16 5 4 92 chain 41482 chr6 170805979 + 86473026 86473550 LTR6B 557 + 0 557 33684 22 0 27 6 1 2 302 0 1 41 0 2 90 0 1 6 0 1 56 chain 62059 chr6 170805979 + 86477346 86479664 HERVS71-int 4705 + 2488 4446 25859 6 1 0 11 2 1 12 4 1 38 12 11 21 67 65 15 3 1 17 2 0 11 73 63 9 1 0 16 88 71 10 1 0 8 2 0 37 2 0 8 1 0 10 1 0 5 93 19 17 6 5 14 1 0 4 9 7 19 70 53 10 0 39 10 55 0 38 1 0 17 1 0 6 4 2 15 5 2 19 14 12 11 3 0 6 1 0 12 15 9 12 23 17 9 1 0 5 1 0 23 22 18 8 1 0 7 1 0 16 1 0 18 2 0 56 25 20 6 1 0 29 1 0 33 5 2 50 7 5 16 1 0 34 2 1 6 1 0 13 1 0 15 2 0 10 3 0 5 1 0 29 1 0 7 7 4 4 1 0 31 4 0 23 15 12 31 4 1 22 1 0 17 9 6 26 2 0 14 1 0 21 1 0 45 1 0 6 43 36 43 1 0 8 1 0 10 2 1 12 2 0 17 2 0 8 2 0 22 302 201 6 0 6 20 2 1 12 22 14 15 chain 37466 chr6 170805979 + 86481165 86481651 LTR6B 557 + 57 544 36428 302 0 1 41 2 1 73 1 0 6 12 13 6 0 1 43 chain 47920 chr6 170805979 + 86512185 86512809 PABL_A 660 + 0 652 30322 47 0 3 4 0 1 29 0 9 111 0 19 119 7 3 307 chain 52549 chr6 170805979 + 86549737 86553023 MER4E1 777 + 0 770 28713 24 0 1 171 6 5 64 14 15 134 2498 0 48 0 1 75 28 14 135 7 1 82 chain 544659 chr6 170805979 + 86569580 86575717 L1PA3long 6157 + 6 6157 1047 1080 0 3 1191 0 5 2419 0 1 1298 0 5 149 chain 25393 chr6 170805979 + 86605578 86605891 AluYk4 311 + 0 303 48636 126 7 0 171 3 0 6 chain 2751 chr6 170805979 + 86610234 86610273 L1PA7 6471 + 6158 6197 101966 39 chain 21887 chr6 170805979 + 86610273 86610525 L1PA7 6471 + 6203 6451 53985 110 4 0 138 chain 207546 chr6 170805979 + 86646406 86648630 L1HS 6032 + 2500 4724 9441 2224 chain 57469 chr6 170805979 + 86663665 86664497 LTR12 884 + 0 884 27113 94 0 132 151 1 23 175 103 0 291 0 1 17 chain 516998 chr6 170805979 + 86731396 86737236 L1PA3long 6157 + 7 6157 2418 734 1 0 718 6 1 40 0 1 75 0 192 359 0 1 12 0 1 562 5 0 113 0 123 238 2 1 2924 0 4 51 chain 32563 chr6 170805979 + 86737246 86737628 L1PA4 6152 + 5768 6151 39902 208 2 3 172 chain 68570 chr6 170805979 + 86759880 86760800 THE1C-int 1605 + 691 1605 24319 7 5 0 11 3 0 449 12 13 81 23 24 266 1 2 4 1 0 57 chain 33562 chr6 170805979 + 86819952 86820399 L1PA7 6471 + 6027 6469 39037 123 0 1 147 17 18 146 7 0 7 chain 17084 chr6 170805979 + 86862933 86863120 L1PA3long 6157 + 3566 3753 59721 187 chain 218543 chr6 170805979 + 86863120 86865523 L1PA3long 6157 + 3754 6157 9081 2403 chain 546463 chr6 170805979 + 86872832 86879539 L1PA3long 6157 + 4 6157 944 978 0 1 1025 0 1 1173 1 2 77 559 0 685 0 1 616 0 1 1593 chain 67296 chr6 170805979 + 86893413 86894178 L1HS 6032 + 1841 2607 24621 353 1 2 411 chain 208283 chr6 170805979 + 86894197 86897026 L1PBa 3878 + 865 3712 9407 235 0 1 5 1 0 278 0 14 227 20 6 242 0 3 45 0 1 129 1 5 82 3 1 326 1 0 118 5 9 179 8 10 111 0 2 53 7 5 90 8 10 44 6 9 116 3 0 190 6 8 62 0 1 30 17 19 181 chain 547402 chr6 170805979 + 86897717 86903738 L1PA2 6032 + 12 6032 899 3278 8 5 892 0 1 1801 0 1 42 chain 2471 chr6 170805979 + 86906125 86906167 MER81 114 + 22 64 103798 11 1 0 5 1 2 24 chain 40661 chr6 170805979 + 86919530 86920052 L1PA8 5853 + 5325 5853 34178 159 4 14 66 1 0 44 2 0 73 1 0 18 0 1 7 0 1 32 2 1 19 1 0 93 chain 556228 chr6 170805979 + 86921166 86927317 L1PA3long 6157 + 0 6157 348 2154 0 1 170 0 1 1942 0 3 712 0 1 1173 chain 11451 chr6 170805979 + 86965727 86966000 L1PB1 5432 + 5179 5427 67830 40 9 8 9 1 0 45 1 0 15 1 0 4 2 0 11 9 0 10 55 49 22 1 0 12 1 0 18 2 0 5 chain 48236 chr6 170805979 + 87001900 87003255 L1MA3 4352 + 372 1021 30202 141 1 0 58 704 0 202 2 0 73 0 1 21 2 0 7 1 0 94 5 8 44 chain 70295 chr6 170805979 + 87013797 87014964 L1PA7 6471 + 5614 6468 23927 110 0 1 71 318 4 372 0 1 12 0 1 273 2 0 9 chain 22000 chr6 170805979 + 87109189 87109536 THE1B 368 + 7 368 53834 6 2 0 27 0 5 127 2 1 25 44 54 86 0 2 28 chain 514187 chr6 170805979 + 87139689 87145758 L1PA6 6164 + 0 6162 2562 63 4 5 391 7 6 278 0 4 247 0 2 961 0 1 223 0 1 597 0 1 415 1 0 83 0 1 348 0 23 262 0 43 324 0 17 1531 1 0 158 0 2 175 chain 3637 chr6 170805979 + 87165374 87165433 Tigger4b 360 + 30 358 94126 14 0 270 25 1 0 19 chain 508323 chr6 170805979 + 87301053 87307179 L1PA3long 6157 + 8 6152 2827 528 40 39 77 5 7 38 0 7 354 8 9 141 55 55 688 0 1 36 0 1 561 0 2 619 2 0 100 0 2 10 0 1 2021 0 3 550 0 1 146 7 0 7 0 7 133 chain 102474 chr6 170805979 + 87307225 87308382 L1PA5 6144 + 4983 6140 18014 1157 chain 3986 chr6 170805979 + 87313881 87313939 MER5A 189 + 127 184 91547 18 2 1 38 chain 9892 chr6 170805979 + 87353274 87353422 L1MA3 4352 + 4171 4311 70633 64 4 0 23 2 0 24 1 0 6 1 0 23 chain 117277 chr6 170805979 + 87457175 87458957 L1MA3 4352 + 2570 4322 16005 16 4 16 50 0 1 4 0 1 46 3 4 167 1 0 172 0 1 75 12 6 139 0 4 105 1 0 227 0 1 40 0 1 19 37 39 137 7 8 57 0 3 23 0 2 106 0 3 10 1 5 18 77 51 90 27 26 15 2 0 7 0 1 16 1 0 6 1 0 23 29 0 11 chain 4524 chr6 170805979 + 87488444 87488523 U6 107 + 0 78 88185 22 1 0 8 2 0 5 3 4 11 0 1 27 chain 47709 chr6 170805979 + 87539258 87539840 LTR10C 591 + 0 583 30394 33 2 0 305 1 2 168 0 2 73 chain 3864 chr6 170805979 + 87573579 87573645 L1MB3 1562 + 1480 1548 92384 23 4 7 13 1 0 25 chain 66289 chr6 170805979 + 87708831 87709566 L1PA5 6144 + 5397 6132 24880 735 chain 6525 chr6 170805979 + 87720913 87720995 U13 108 + 0 82 79252 82 chain 3362 chr6 170805979 + 87784114 87784467 MLT1E3 631 + 271 631 96470 12 1 0 15 121 123 20 141 147 20 1 2 8 1 0 13 chain 12678 chr6 170805979 + 87837439 87837652 L1MC2 1988 + 900 1128 65663 63 0 1 22 0 1 4 3 0 60 33 49 28 chain 6067 chr6 170805979 + 87847549 87847630 MADE1 96 + 0 96 80842 45 3 18 33 chain 11879 chr6 170805979 + 87966076 87966246 THE1D 372 + 224 372 67054 118 22 0 30 chain 29845 chr6 170805979 + 87987718 87988161 L1PA13 3608 + 3059 3488 42191 69 1 0 31 1 0 114 2 0 63 4 3 23 1 0 15 22 19 47 2 0 5 2 0 20 1 0 20 chain 6305 chr6 170805979 + 88039883 88040009 L1MD1 2063 + 1477 1603 79979 27 0 3 5 6 3 11 1 0 14 1 0 4 13 15 44 chain 3962 chr6 170805979 + 88056506 88056549 MER5A1 166 + 34 77 91685 43 chain 21832 chr6 170805979 + 88082361 88082720 THE1B 368 + 2 368 54062 109 0 3 5 2 0 50 47 45 14 7 15 63 0 1 4 2 1 56 chain 6037 chr6 170805979 + 88172308 88172543 MLT1A0 366 + 28 305 80938 5 1 0 14 38 38 26 5 7 30 82 123 34 chain 520926 chr6 170805979 + 88253621 88259773 L1PA6 6164 + 0 6162 2230 194 7 8 74 0 1 8 0 2 222 6 5 671 0 1 403 0 3 676 0 2 35 0 1 125 0 5 644 0 1 137 1 6 81 0 1 388 0 1 396 0 1 1223 7 0 701 9 2 144 chain 40179 chr6 170805979 + 88317391 88317927 MLT2A2 560 + 5 560 34532 293 0 6 95 3 14 72 3 4 15 4 5 51 chain 140928 chr6 170805979 + 88318935 88320480 L1PA3long 6157 + 4605 6153 13032 705 0 4 823 1 0 16 chain 328480 chr6 170805979 + 88335709 88339343 L1PA3long 6157 + 2525 6157 6242 199 1 0 453 1 0 2980 chain 547127 chr6 170805979 + 88350821 88358542 L1PA3long 6157 + 5 6157 914 1435 1 0 396 1560 0 371 0 2 109 1 2 379 5 0 380 0 2 102 0 1 1922 1 0 789 10 1 237 0 1 23 chain 46130 chr6 170805979 + 88353708 88354213 L1PA3long 6157 + 4801 5306 30847 505 chain 76132 chr6 170805979 + 88381587 88382555 LTR5_Hs 974 + 0 974 22531 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 51513 chr6 170805979 + 88389822 88390418 L1PA5 6144 + 5517 6137 29040 241 0 23 190 1 2 164 chain 512601 chr6 170805979 + 88390780 88396871 L1PA6 6164 + 55 6162 2639 105 34 35 42 3 5 276 0 2 47 1 0 356 0 4 367 0 2 63 0 9 601 2 3 239 0 1 121 1 2 131 2 0 116 0 4 553 0 1 45 9 5 334 2 0 96 0 2 27 0 1 53 1 0 483 3 1 116 0 1 1005 2 0 848 2 0 5 chain 536813 chr6 170805979 + 88406498 88412527 L1PA3long 6157 + 2 6157 1519 150 0 1 169 3 0 252 1 2 200 0 128 178 1 2 1087 11 2 1042 1 0 472 0 1 953 3 10 1506 chain 86122 chr6 170805979 + 88433305 88434255 L1PA3long 6157 + 2259 3209 20411 159 0 1 758 1 0 32 chain 268076 chr6 170805979 + 88434257 88437205 L1PA3long 6157 + 3209 6157 7759 2948 chain 6264 chr6 170805979 + 88437790 88438195 MLT1C 463 + 65 460 80114 30 246 235 57 51 52 21 chain 35913 chr6 170805979 + 88453407 88454042 L1PB3 3668 + 2998 3616 37463 77 8 6 29 0 3 56 3 0 8 1 0 114 1 0 83 8 18 86 42 6 16 16 38 28 24 19 9 2 0 8 1 0 10 1 0 4 chain 21888 chr6 170805979 + 88462138 88462424 L1PA16 3655 + 3254 3537 53984 36 3 1 118 1 0 128 chain 62144 chr6 170805979 + 88603025 88603789 MER4E 760 + 0 760 25837 166 8 0 141 0 4 71 0 4 60 1 0 85 4 0 139 0 1 89 chain 3376 chr6 170805979 + 88620857 88620980 MER119 576 + 191 313 96337 17 72 71 34 chain 319762 chr6 170805979 + 88643386 88647026 L1PA5 6144 + 2514 6138 6412 648 0 2 6 1 0 1070 1 0 151 0 1 587 1 2 220 1 9 167 9 12 666 31 2 81 chain 42206 chr6 170805979 + 88658548 88659094 MLT2A2 560 + 0 560 33246 180 1 0 103 1 0 119 0 11 50 0 2 25 0 1 62 0 2 5 chain 16661 chr6 170805979 + 88672343 88672696 L1PB1 5432 + 5105 5423 60197 12 4 1 20 1 0 4 3 2 12 2 0 3 2 0 10 2 0 50 1 0 18 1 0 42 2 1 16 3 0 7 14 5 18 23 18 11 1 0 15 1 0 23 1 0 11 1 0 19 chain 12783 chr6 170805979 + 88678941 88679100 Tigger2 2703 + 2272 2434 65469 93 0 3 66 chain 122031 chr6 170805979 + 88714806 88716164 L1PA4 6152 + 3979 5338 15189 145 0 1 1213 chain 19384 chr6 170805979 + 88723264 88723553 MER83B 357 + 0 323 57151 46 4 21 63 20 38 82 1 0 73 chain 36073 chr6 170805979 + 88724683 88725121 LTR10F 562 + 8 562 37355 108 0 115 161 0 1 169 chain 198100 chr6 170805979 + 88727080 88729853 HERVIP10FH-int 2884 + 149 2824 9772 45 1 5 9 3 0 191 3 0 515 2 1 289 6 0 176 4 1 7 3 0 9 1 0 8 2 1 61 7 1 126 3 0 5 0 1 6 12 9 12 26 12 14 7 1 12 20 3 43 22 10 34 39 27 59 0 2 206 1 0 46 1 2 135 0 4 12 5 4 17 5 4 18 13 15 62 14 6 238 0 1 25 1 0 23 1 0 29 0 3 10 2 1 50 1 0 17 1 0 13 10 4 35 chain 34951 chr6 170805979 + 88730135 88730573 LTR10F 562 + 0 553 38055 106 1 113 9 0 3 322 chain 24782 chr6 170805979 + 88740572 88740867 L1PA8A 6298 + 5991 6283 49616 218 3 0 74 chain 42071 chr6 170805979 + 88754563 88755071 MER9a3 513 + 0 513 33311 18 0 2 91 0 1 313 1 0 8 0 1 20 0 2 57 chain 92474 chr6 170805979 + 88772465 88773479 L1PA3long 6157 + 5139 6156 19276 168 3 6 843 chain 524983 chr6 170805979 + 88827094 88833578 L1PA7 6471 + 1 6459 2051 65 0 1 632 25 26 45 0 2 127 6 3 24 0 1 174 0 1 165 0 1 268 7 10 55 0 3 271 0 1 260 0 11 54 0 1 117 0 1 7 11 10 224 12 6 36 0 7 31 15 1 224 1 0 72 5 4 154 0 4 62 1 0 49 39 2 269 12 4 17 2 0 109 1 0 407 1 0 425 0 1 611 1 0 227 0 7 244 0 1 67 0 4 8 0 4 375 0 1 236 5 6 60 12 13 92 11 4 54 chain 4026 chr6 170805979 + 88921846 88921902 MER2 342 + 157 211 91260 37 2 0 17 chain 166694 chr6 170805979 + 88946682 88949129 SVA_F 1814 + 10 1812 11294 937 527 15 39 2 0 4 1 0 133 130 0 674 chain 2218 chr6 170805979 + 88947620 88947680 SVA_F 1814 + 1011 1070 69779 40 2 1 18 chain 24656 chr6 170805979 + 88947680 88948059 SVA_F 1814 + 557 936 35559 379 chain 7605 chr6 170805979 + 88948059 88948146 SVA_F 1814 + 1001 1089 58848 23 0 1 64 chain 1338 chr6 170805979 + 88948332 88948403 SVA_F 1814 + 855 924 65348 33 1 0 4 1 0 32 chain 4627 chr6 170805979 + 88948403 88948455 SVA_F 1814 + 1037 1089 67774 52 chain 251311 chr6 170805979 + 88953910 88958993 L1PB2 3958 + 32 3838 8190 21 25 13 18 34 24 31 2 0 24 22 15 37 1 3 9 10 2 268 1 0 31 0 4 51 2 0 117 0 1 35 0 95 93 339 0 189 794 167 65 9 13 82 0 1 155 49 0 39 0 4 52 0 2 72 1 2 164 308 0 131 21 0 110 1 2 304 2 0 10 9 0 244 1 3 27 12 13 149 1 0 108 0 7 22 1 2 19 3 0 8 1 3 45 1 0 24 7 9 136 2 0 56 1 0 11 5 0 40 0 7 16 19 14 20 0 4 69 1 0 74 1 0 48 0 3 10 1 0 74 2 0 21 2 1 63 chain 32656 chr6 170805979 + 88960928 88961416 MLT2A1 477 + 0 475 39798 66 1 6 10 0 1 86 4 1 215 43 31 13 4 0 46 chain 256767 chr6 170805979 + 88967302 88972398 MER61-int 3695 + 53 3688 8066 6 0 5 129 58 19 59 2 1 54 4 0 6 12 9 51 0 1 18 15 1 71 4 5 54 41 45 37 0 2 15 0 20 115 1 4 73 2 0 16 1 0 144 328 3 77 0 56 179 0 7 9 1 0 53 0 4 69 1 6 80 1164 0 14 0 2 154 0 1 67 6 1 273 0 8 46 8 10 348 1 0 128 11 8 152 0 5 63 0 1 25 6 5 36 1 0 166 2 1 5 0 1 74 3 2 104 0 1 59 29 0 34 2 3 248 15 14 39 0 6 28 chain 9889 chr6 170805979 + 88975796 88976014 MER65A 464 + 0 205 70644 39 36 22 16 37 36 29 0 2 61 chain 7668 chr6 170805979 + 88992433 88992555 MER2 342 + 136 258 75709 17 0 11 6 11 0 88 chain 14738 chr6 170805979 + 89006279 89006484 LTR49-int 1717 + 1273 1479 62620 15 0 1 118 8 9 17 1 0 46 chain 11828 chr6 170805979 + 89008254 89008407 MER50 708 + 556 708 67153 68 2 1 83 chain 24059 chr6 170805979 + 89015733 89016224 L1PA15 4387 + 3885 4366 50713 5 2 0 43 1 0 107 0 1 63 1 0 17 71 65 21 4 0 8 7 21 29 10 7 42 22 15 27 1 0 10 chain 55515 chr6 170805979 + 89016503 89017368 L1MA2 4263 + 3227 4079 27711 64 2 10 53 6 5 13 1 0 100 1 0 112 6 2 76 1 0 4 14 1 125 18 15 65 5 16 68 11 9 15 0 1 75 14 7 16 chain 4359 chr6 170805979 + 89030541 89030683 L1MB7 1623 + 1365 1464 89113 5 1 0 50 67 26 6 1 0 12 chain 21228 chr6 170805979 + 89042047 89042287 L1PA5 6144 + 5892 6132 54851 240 chain 22006 chr6 170805979 + 89043830 89044111 AluSp 311 + 10 305 53827 36 5 11 138 0 8 102 chain 110173 chr6 170805979 + 89064842 89066296 LTR12C 1709 + 0 1701 17058 282 95 206 191 0 159 274 1 0 5 3 1 9 0 4 16 1 0 77 0 4 389 27 0 84 chain 79381 chr6 170805979 + 89127789 89128845 MER11A 1151 + 0 1144 21767 23 2 1 31 0 99 62 0 1 10 0 4 59 8 4 32 0 2 115 0 1 94 0 1 296 25 1 11 8 15 58 1 2 45 2 0 16 0 1 82 0 2 76 chain 8155 chr6 170805979 + 89183570 89183758 L1PB3 3668 + 3403 3566 74511 51 64 41 32 4 2 37 chain 43918 chr6 170805979 + 89189204 89189674 L1PA2 6032 + 5562 6032 32184 470 chain 4028 chr6 170805979 + 89256094 89256147 MER3 215 + 160 215 91256 17 0 2 36 chain 18354 chr6 170805979 + 89277051 89277396 THE1D 372 + 18 352 58297 35 48 38 10 2 1 64 33 34 25 1 0 127 chain 83401 chr6 170805979 + 89300161 89301728 L1PREC2 3366 + 1318 2576 20933 56 300 0 126 16 11 47 10 4 36 15 0 50 0 3 111 7 0 6 1 0 4 0 4 36 1 0 25 24 0 8 5 29 13 8 8 55 0 4 65 7 10 27 25 35 137 0 6 8 4 0 158 0 1 148 6 5 22 chain 9206 chr6 170805979 + 89322383 89322523 L1PB 1623 + 1311 1453 72111 87 13 16 32 1 0 7 chain 13423 chr6 170805979 + 89416186 89416376 MER30 238 + 36 238 64433 64 2 0 5 4 22 63 4 0 48 chain 25769 chr6 170805979 + 89449055 89449421 Tigger1 2417 + 1470 1840 48073 156 13 14 14 5 7 21 1 2 156 chain 27623 chr6 170805979 + 89491478 89491786 L1PA5 6144 + 5824 6132 45430 308 chain 9875 chr6 170805979 + 89514388 89514528 MER30 238 + 105 238 70669 7 4 0 84 3 0 42 chain 9620 chr6 170805979 + 89516069 89516377 MLT2B1 522 + 0 287 71222 106 88 85 21 78 60 15 chain 3368 chr6 170805979 + 89610985 89611032 MER5B 177 - 130 175 96400 5 1 0 28 1 0 12 chain 4574 chr6 170805979 + 89622443 89622502 MER5A 189 + 99 161 87947 11 0 3 48 chain 7111 chr6 170805979 + 89711399 89711480 MER2 342 + 146 227 77218 81 chain 31367 chr6 170805979 + 89731329 89731736 L1PA8 5853 + 5411 5814 40838 110 6 9 32 1 0 48 2 0 65 5 4 9 1 0 55 1 0 17 1 0 54 chain 23951 chr6 170805979 + 89768182 89768522 THE1B 368 + 0 348 50864 52 0 3 25 1 2 87 1 0 11 0 1 16 0 5 22 7 6 76 1 0 4 0 1 37 chain 76340 chr6 170805979 + 89782808 89783854 MER11A 1151 + 0 1151 22481 68 0 99 63 0 4 58 8 4 147 0 1 28 2 0 66 0 1 28 2 1 148 0 23 96 7 0 3 18 0 12 0 23 11 18 0 36 0 1 44 0 2 16 3 4 164 chain 4365 chr6 170805979 + 89823293 89823369 U13_ 108 + 0 78 89082 38 14 16 24 chain 83375 chr6 170805979 + 89890820 89891765 LTR5_Hs 974 + 0 974 20950 19 0 2 516 0 1 10 0 7 204 1 20 195 chain 262170 chr6 170805979 + 90030417 90033350 L1PA4 6152 + 3201 6134 7903 739 0 1 718 1 0 967 4 4 504 chain 544902 chr6 170805979 + 90053981 90060136 L1PA4 6152 + 1 6152 1037 447 20 14 118 1 0 1105 1 0 130 0 2 31 0 1 1675 1 0 366 0 2 2260 chain 31680 chr6 170805979 + 90163942 90164296 L1PA4 6152 + 3015 3370 40596 156 0 1 198 chain 244823 chr6 170805979 + 90164296 90167066 L1PA4 6152 + 3371 6151 8353 985 0 4 94 0 3 554 1 0 216 5 6 45 1 0 4 0 1 21 0 4 544 1 0 299 chain 97405 chr6 170805979 + 90208061 90209213 L1PA7 6471 + 5315 6470 18605 217 0 1 89 0 2 729 9 6 5 0 3 103 chain 3310 chr6 170805979 + 90226024 90226066 MER5A 189 + 147 189 96923 42 chain 14792 chr6 170805979 + 90308151 90308347 L1PA8 5853 + 5662 5853 62541 17 1 0 10 1 0 50 4 2 19 1 0 93 chain 3539 chr6 170805979 + 90340654 90340698 MLT2B2 565 + 521 565 94955 44 chain 23750 chr6 170805979 + 90485947 90486293 THE1B 368 + 7 348 51195 162 1 0 31 2 0 83 31 29 36 chain 4632 chr6 170805979 + 90488134 90488186 LTR54 533 + 318 370 87633 52 chain 527055 chr6 170805979 + 90562108 90568220 L1PA5 6144 + 0 6140 1955 121 0 14 778 0 1 99 1 0 74 7 15 67 9 0 277 0 4 112 0 2 749 1 0 494 0 1 54 2 13 295 4 0 495 6 6 524 0 2 1398 1 2 411 1 0 132 chain 524703 chr6 170805979 + 90622817 90629716 L1PA7 6471 + 1 6466 2065 194 2 3 205 0 3 180 0 4 96 5 6 187 0 1 33 1 4 5 3 0 136 0 1 674 0 1 88 1 3 251 0 1 184 1 0 66 1 0 193 0 2 110 0 2 799 0 5 46 8 8 4 0 1 25 2 1 515 9 10 4 1 0 259 0 3 295 0 1 23 0 1 313 481 0 99 0 1 486 12 20 68 1 0 182 0 1 221 4 0 3 5 0 202 3 23 213 chain 33531 chr6 170805979 + 90627750 90628116 L1PA3long 6157 + 5790 6156 39060 366 chain 12322 chr6 170805979 + 90659093 90659284 L1PA17 2846 + 2499 2693 66263 20 0 4 12 1 0 10 0 4 48 5 3 32 1 0 18 3 2 41 chain 25034 chr6 170805979 + 90848323 90848611 AluSc 308 + 8 296 49223 288 chain 6317 chr6 170805979 + 90867814 90868085 MLT1C 463 + 148 463 79945 11 0 1 38 26 0 10 140 209 46 chain 22555 chr6 170805979 + 90892372 90892736 THE1C 375 + 0 362 53037 30 1 0 17 36 33 105 28 30 147 chain 8225 chr6 170805979 + 90978068 90978173 MLT1C 463 + 351 456 74337 105 chain 17705 chr6 170805979 + 91042190 91042385 L1PA3long 6157 + 5960 6155 59000 195 chain 39489 chr6 170805979 + 91071887 91072458 THE1C-int 1605 + 1046 1600 35019 103 22 22 42 5 0 3 14 0 20 2 5 13 6 5 341 chain 59787 chr6 170805979 + 91210988 91211637 L1PA2 6032 + 3178 3827 26433 649 chain 21617 chr6 170805979 + 91223992 91224252 L1PA7 6471 + 6210 6466 54329 248 4 0 8 chain 27933 chr6 170805979 + 91256552 91256925 THE1B 368 + 0 368 44981 19 2 0 151 2 0 117 7 6 75 chain 14133 chr6 170805979 + 91336585 91336819 MER30 238 + 0 238 63401 22 16 8 77 4 0 8 5 18 63 3 6 36 chain 55356 chr6 170805979 + 91339393 91340106 L1PA6 6164 + 5244 5959 27759 58 6 7 189 0 1 460 chain 16945 chr6 170805979 + 91362754 91362960 MLT2A2 560 + 94 301 59864 136 0 1 70 chain 95904 chr6 170805979 + 91362970 91364262 HERVL-int 5654 + 4328 5645 18782 40 0 4 510 13 16 168 0 7 71 10 9 29 0 1 245 5 1 53 1 4 92 0 3 8 0 5 9 10 14 28 chain 37294 chr6 170805979 + 91364271 91364771 MLT2A2 560 + 0 505 36550 120 7 6 53 0 1 262 8 13 50 chain 99924 chr6 170805979 + 91388738 91390261 L1PB1 5432 + 3930 5422 18311 101 4 6 16 3 2 4 0 1 146 1 0 104 1 0 295 1 5 17 2 0 397 17 17 62 1 0 12 4 1 22 1 0 8 1 0 10 18 12 52 2 1 16 4 3 40 1 0 11 31 21 14 25 20 24 1 0 22 1 0 12 2 1 17 chain 120554 chr6 170805979 + 91420644 91422207 THE1B-int 1605 + 0 1600 15437 37 7 9 37 0 1 218 0 1 129 34 59 13 0 4 916 0 4 172 chain 69061 chr6 170805979 + 91423315 91424078 L1PA4 6152 + 5380 6143 24202 763 chain 26086 chr6 170805979 + 91456983 91457353 THE1C 375 + 0 375 47598 233 0 1 24 6 0 64 4 15 13 8 7 18 chain 14172 chr6 170805979 + 91489867 91490064 L1PB4 2604 + 2010 2339 63356 14 0 128 138 5 9 40 chain 3785 chr6 170805979 + 91503890 91503983 L1MA3 4352 + 4258 4322 92951 7 0 1 16 1 0 6 1 0 23 28 0 11 chain 405219 chr6 170805979 + 91589964 91594963 L1PA6 6164 + 0 6162 5089 406 4 0 10 0 1 39 10 9 375 0 1 366 4 0 302 1 2 78 0 3 138 17 1168 291 0 1 113 0 10 382 2 1 181 0 1 484 0 4 524 1 0 160 0 1 104 6 7 158 4 0 376 0 2 315 4 5 144 chain 4257 chr6 170805979 + 91709333 91709429 MLT1A 405 + 296 379 89774 17 8 9 15 1 0 28 13 0 14 chain 74059 chr6 170805979 + 91824733 91825710 L1PA8 5853 + 4865 5853 23076 120 0 2 19 1 0 4 7 5 280 3 20 249 1 0 46 2 0 69 1 0 61 2 1 19 1 0 73 0 1 19 chain 46359 chr6 170805979 + 91853685 91854324 THE1C-int 1605 + 0 684 30904 12 4 3 81 0 57 176 17 0 91 2 1 24 0 7 217 2 1 8 0 1 5 chain 95726 chr6 170805979 + 91871488 91872531 L1PA2 6032 + 4986 6029 18805 1043 chain 52929 chr6 170805979 + 91939294 91939890 L1PA5 6144 + 4499 5093 28601 159 1 0 393 1 0 42 chain 41434 chr6 170805979 + 91959049 91959580 L1PA7 6471 + 3757 4285 33712 61 14 12 172 1 0 283 chain 143253 chr6 170805979 + 91973168 91974790 L1PA4 6152 + 3078 4702 12838 79 1 0 696 0 1 589 2 0 192 2 6 61 chain 33389 chr6 170805979 + 91995653 91996426 L1PB1 5432 + 4849 5424 39188 188 11 18 48 171 0 11 1 0 24 1 0 9 27 20 53 2 1 16 1 0 44 1 0 13 72 54 22 1 0 21 2 1 12 1 0 16 1 0 4 chain 45532 chr6 170805979 + 92009672 92010166 L1PA2 6032 + 5537 6031 31293 494 chain 84907 chr6 170805979 + 92029895 92030998 L1PA7 6471 + 2175 6357 20638 40 0 1 182 2 3097 107 0 4 7 3 1 115 27 6 62 0 1 183 0 1 375 chain 505786 chr6 170805979 + 92078290 92084438 L1PA6 6164 + 0 6162 2939 332 20 19 109 1 0 1484 12 10 162 0 3 214 0 1 749 6 5 101 0 1 286 4 0 222 4 0 60 0 10 59 0 2 167 9 12 360 0 4 681 0 1 254 1 0 117 0 2 725 0 1 9 chain 29179 chr6 170805979 + 92095589 92096093 Tigger3b 1229 + 361 876 43085 177 0 1 17 6 0 6 0 1 4 3 0 8 3 0 5 13 35 12 0 4 22 1 0 20 36 34 56 16 14 99 chain 49165 chr6 170805979 + 92096595 92097224 L1PA7 6471 + 5849 6465 29880 107 12 0 216 0 1 39 1 0 5 0 1 239 2 0 8 chain 3962 chr6 170805979 + 92163288 92163359 MADE1 96 + 0 86 91681 23 17 32 31 chain 8778 chr6 170805979 + 92199921 92200026 MER41-int 2638 + 1439 1544 73043 105 chain 29231 chr6 170805979 + 92200948 92201262 AluYb8 318 + 0 312 42999 132 2 0 180 chain 37291 chr6 170805979 + 92303916 92304418 L1MA1 4479 + 249 762 36554 30 2 0 51 0 16 5 1 0 67 0 2 129 5 0 195 0 1 17 chain 97702 chr6 170805979 + 92355646 92356856 L1P3 4156 + 2751 3997 18564 439 0 5 9 0 23 219 0 4 267 0 1 7 0 1 106 0 1 47 4 5 112 chain 3141 chr6 170805979 + 92409535 92409576 MER51A 677 + 199 255 98465 27 0 15 14 chain 382425 chr6 170805979 + 92420762 92425792 L1PA5 6144 + 0 6139 5440 113 11 25 71 3 2 146 27 34 27 5 4 147 1 0 183 12 13 137 0 2 50 25 0 211 13 4 931 7 10 167 0 4 31 3 2 875 0 1 69 0 2 510 200 1305 82 0 5 259 0 1 73 5 8 113 6 3 189 0 2 328 chain 94374 chr6 170805979 + 92509115 92510461 L1PA11 4918 + 6 1363 18987 36 11 9 27 2 0 6 14 13 18 1 0 16 2 0 49 1 0 33 9 6 246 0 3 7 3 0 87 1 5 17 0 1 6 1 0 15 0 3 189 13 14 257 7 22 272 chain 12936 chr6 170805979 + 92530393 92530557 AluYk4 311 + 155 301 65194 99 18 0 47 chain 101812 chr6 170805979 + 92547077 92548393 THE1A-int 1579 + 251 1579 18084 12 0 2 79 0 1 288 12 15 4 1 0 4 0 1 452 2 6 435 1 2 17 0 1 9 chain 5605 chr6 170805979 + 92596283 92596374 L1MC1 2226 + 1888 1980 82785 29 13 14 49 chain 2989 chr6 170805979 + 92618935 92619022 L1MB1 2102 + 1965 2052 99955 32 40 40 15 chain 218697 chr6 170805979 + 92626295 92628842 L1P2 5180 + 1948 4500 9076 1478 1 2 332 0 5 79 2 1 655 chain 82687 chr6 170805979 + 92640469 92641412 L1PA5 6144 + 4897 5843 21087 772 0 2 14 1 0 99 0 1 25 0 1 32 chain 82620 chr6 170805979 + 92645142 92646083 L1PA3long 6157 + 5211 6152 21099 923 0 1 5 1 0 12 chain 13518 chr6 170805979 + 92693369 92693625 MER67C 710 + 306 533 64291 55 36 14 87 14 6 24 9 10 31 chain 72716 chr6 170805979 + 92720474 92721354 L1PA7 6471 + 5574 6458 23378 46 2 1 72 0 1 286 0 2 330 5 7 139 chain 4646 chr6 170805979 + 92724190 92724455 LTR12C 1709 + 654 718 87552 22 201 0 42 chain 75222 chr6 170805979 + 92732328 92733191 L1PA6 6164 + 2204 3073 22791 129 0 1 367 0 3 171 0 2 196 chain 5927 chr6 170805979 + 92824190 92824275 MER41A 554 + 441 532 81371 20 8 14 57 chain 32662 chr6 170805979 + 92825402 92825876 MER4A1 472 + 0 472 39794 21 1 0 203 7 28 15 29 8 72 6 5 120 chain 131067 chr6 170805979 + 92831271 92832877 MER4-int 2692 + 1081 2680 13920 13 0 1 321 0 1 41 2 0 435 1 0 123 5 0 108 1 0 556 chain 37651 chr6 170805979 + 92847324 92847767 LTR2 463 + 0 463 36304 162 7 27 274 chain 243276 chr6 170805979 + 92869237 92872255 L1P2 5180 + 2 3056 8397 136 3 14 95 1 0 261 9 7 187 5 4 81 1 0 5 1 0 141 0 25 7 0 1 62 9 12 162 0 1 1641 8 9 203 chain 435561 chr6 170805979 + 92880604 92886192 L1PA8A 6298 + 499 6289 4652 14 1 0 188 0 19 57 6 7 297 5 12 9 0 4 5 0 3 27 1 0 196 0 1 488 0 3 254 0 82 221 0 22 44 0 1 46 11 17 173 7 14 264 0 1 6 0 2 95 0 9 126 0 9 138 2 1 38 8 0 26 3 7 18 0 5 33 1 0 186 0 12 75 1 0 64 0 2 775 0 1 47 1 4 753 0 1 71 0 4 13 16 15 63 0 3 6 1 2 269 0 1 361 0 2 78 chain 532794 chr6 170805979 + 92951877 92958015 L1PA4 6152 + 6 6151 1718 1279 0 1 821 0 3 876 0 3 951 0 1 688 1 0 1522 chain 25001 chr6 170805979 + 92969158 92969466 L1PA7 6471 + 6154 6461 49276 64 2 1 242 chain 68846 chr6 170805979 + 92983878 92984625 L1PA2 6032 + 5283 6030 24249 747 chain 363111 chr6 170805979 + 92995182 92999498 L1P1 4361 + 4 4316 5765 1412 0 3 823 14 16 492 5 7 523 0 1 507 9 0 92 1 0 267 2 1 157 1 0 11 chain 115563 chr6 170805979 + 93000001 93001312 L1PA5 6144 + 4825 6144 16303 458 0 1 7 0 4 97 0 3 749 chain 315911 chr6 170805979 + 93032025 93035626 L1P1 4361 + 1 3601 6486 1033 1 0 649 0 1 637 0 1 855 1 0 103 1 0 321 chain 83558 chr6 170805979 + 93072930 93073975 MER11C 1089 + 0 1074 20899 267 0 3 49 1 18 197 6 7 4 1 0 45 8 9 176 1 9 290 chain 25299 chr6 170805979 + 93162467 93162754 L1PA5 6144 + 5852 6139 48784 287 chain 75342 chr6 170805979 + 93173365 93174330 LTR5_Hs 974 + 1 974 22760 288 0 1 88 0 2 87 0 1 188 1 0 163 8 15 19 20 18 103 chain 61227 chr6 170805979 + 93224643 93225329 L1PA4 6152 + 5397 6084 26057 641 0 1 45 chain 97304 chr6 170805979 + 93282465 93283812 LTR12C 1709 + 0 1709 18621 21 0 9 10 12 3 235 7 11 49 5 48 77 29 24 167 0 278 139 0 47 97 20 13 105 0 5 39 1 0 163 1 0 87 6 5 77 chain 39409 chr6 170805979 + 93284521 93285004 L1PA7 6471 + 5991 6468 35073 76 6 0 401 chain 153964 chr6 170805979 + 93435127 93437044 L1PA7 6471 + 4534 6459 12113 419 2 0 333 1 2 333 1 0 140 11 11 193 0 9 157 0 1 327 chain 311816 chr6 170805979 + 93480087 93484010 L1PA7 6471 + 2493 6467 6576 56 6 19 68 6 0 196 0 1 4 2 0 71 0 1 671 1 3 189 0 1 231 4 6 30 0 1 128 1 2 71 0 1 427 0 8 75 0 1 195 1 0 66 1 0 4 0 1 325 1 0 124 0 5 147 1 0 22 14 21 415 0 2 202 23 42 124 8 5 13 chain 6998 chr6 170805979 + 93509748 93509860 MER84 505 + 388 493 77604 65 19 12 28 chain 80596 chr6 170805979 + 93539970 93541009 L1PA10 4194 + 3126 4161 21512 312 1 0 5 0 3 636 2 0 34 3 0 34 1 0 11 chain 144844 chr6 170805979 + 93547386 93549005 L1PA5 6144 + 2712 4332 12703 962 0 1 657 chain 3462 chr6 170805979 + 93554088 93554126 MLT1H1 527 + 462 500 95531 38 chain 93134 chr6 170805979 + 93618770 93619919 L1PA7 6471 + 5304 6461 19167 317 0 3 99 1 0 414 11 15 92 0 2 61 0 1 6 1 0 147 chain 11157 chr6 170805979 + 93645124 93645261 MER50B 698 + 529 666 68335 137 chain 27082 chr6 170805979 + 93646811 93647115 AluYg6 310 + 0 300 46149 131 3 0 147 2 1 21 chain 26213 chr6 170805979 + 93712279 93712664 THE1C 375 + 0 375 47397 88 37 30 67 3 2 91 1 0 72 1 0 25 chain 21570 chr6 170805979 + 93836385 93836710 L1PA13 3608 + 3141 3461 54410 19 1 0 113 2 0 42 1 7 13 1 0 51 1 0 10 2 0 48 2 0 4 2 0 13 chain 34579 chr6 170805979 + 93882153 93882535 L1PA5 6144 + 4268 4650 38298 382 chain 17450 chr6 170805979 + 93907248 93907618 THE1B 368 + 0 366 59294 108 4 6 55 91 86 51 24 23 37 chain 3623 chr6 170805979 + 94062820 94062884 MLT1B 390 + 12 85 94246 32 12 21 20 chain 31021 chr6 170805979 + 94190823 94191332 MLT2A1 477 + 0 477 41105 169 13 11 22 0 2 179 89 57 37 chain 6014 chr6 170805979 + 94224009 94224090 L1PREC2 3366 + 1679 1763 81025 11 1 4 69 chain 390567 chr6 170805979 + 94238411 94243465 L1PA7 6471 + 10 6458 5310 19 1 14 196 11 13 158 0 3 800 0 4 53 1 0 159 19 14 28 12 13 33 0 17 389 17 1376 250 4 8 66 3 0 86 2 1 118 8 0 168 6 7 365 0 1 89 1 2 144 0 1 9 1 0 6 2 1 50 0 4 242 0 1 37 1 0 376 12 5 71 0 2 212 1 0 197 1 12 296 5 6 94 4 0 92 3 4 136 chain 56314 chr6 170805979 + 94301763 94302437 L1PA7 6471 + 5780 6453 27484 527 14 13 133 chain 26952 chr6 170805979 + 94311902 94312241 L1PA7 6471 + 6111 6458 46334 28 1 0 178 5 14 127 chain 8664 chr6 170805979 + 94336332 94336431 L1PA7 6471 + 6207 6305 73311 73 1 0 25 chain 12533 chr6 170805979 + 94336435 94336584 L1PA7 6471 + 6308 6457 65924 149 chain 15325 chr6 170805979 + 94420473 94420667 L1PA6 6164 + 5858 6053 61877 144 2 3 48 chain 54576 chr6 170805979 + 94432027 94432682 L1PA7 6471 + 5118 5774 28018 227 0 1 138 0 1 133 1 0 156 chain 55672 chr6 170805979 + 94432682 94433369 L1PA7 6471 + 5778 6466 27671 163 0 1 128 0 3 386 3 0 7 chain 28590 chr6 170805979 + 94471871 94472170 AluYk12 309 + 3 302 43975 299 chain 29698 chr6 170805979 + 94476522 94477067 L1PB1 5432 + 4904 5418 42370 88 4 6 6 2 0 99 1 2 12 9 6 15 1 0 8 1 0 12 8 4 5 2 0 52 1 0 18 1 0 44 1 0 7 33 22 4 0 1 12 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 14 chain 33889 chr6 170805979 + 94490461 94490854 L1PA4 6152 + 5741 6143 38795 147 0 7 108 0 1 33 1 2 104 chain 436898 chr6 170805979 + 94511352 94517657 L1PA8A 6298 + 34 6291 4627 6 1 0 16 1 0 11 24 13 20 92 31 4 0 1 13 1 0 8 2 1 12 1 0 7 21 12 15 36 53 9 2 0 31 15 13 4 0 1 10 12 5 32 10 5 36 0 15 4 1 0 11 4 2 20 10 8 50 2 1 18 10 0 7 9 19 57 9 0 4 0 7 51 0 4 6 12 7 25 8 7 80 4 0 70 0 1 147 0 6 105 0 16 351 6 8 14 0 2 5 1 0 572 13 14 56 4 0 215 0 2 120 0 1 64 0 4 60 1 2 82 3 4 162 40 0 11 15 39 369 0 1 40 0 5 51 50 53 216 0 1 17 17 8 75 20 18 78 0 1 575 0 2 63 0 1 16 3 0 5 0 3 5 0 4 527 1 3 5 2 0 400 16 17 75 0 1 419 3 6 214 7 13 65 chain 12369 chr6 170805979 + 94564926 94565069 THE1A-int 1579 + 1431 1574 66198 143 chain 96101 chr6 170805979 + 94573990 94575080 L1PA5 6144 + 5049 6140 18763 945 0 1 145 chain 9784 chr6 170805979 + 94591345 94591465 MER57B1 401 + 0 120 70860 120 chain 11116 chr6 170805979 + 94606093 94606351 L1PB1 5432 + 5186 5420 68384 34 2 1 15 1 0 37 79 62 11 3 1 23 1 0 21 1 0 13 1 0 16 chain 4342 chr6 170805979 + 94607610 94608026 L1MCb 1641 + 430 791 89222 16 181 114 23 85 89 26 13 0 8 37 58 27 chain 11616 chr6 170805979 + 94670375 94670515 THE1B-int 1605 + 1463 1598 67542 117 5 0 18 chain 553218 chr6 170805979 + 94757768 94763904 L1PA3long 6157 + 0 6147 537 1162 0 3 1678 0 1 418 0 2 913 0 1 493 1 0 269 1 2 368 0 4 833 chain 157593 chr6 170805979 + 94806531 94808325 L1PA4 6152 + 4346 6152 11906 289 1 0 541 0 1 33 5 5 70 0 8 717 0 4 138 chain 540677 chr6 170805979 + 94824163 94830307 L1PA2 6032 + 2 6028 1301 309 1 0 238 0 1 157 0 7 54 138 10 2365 0 2 904 0 1 1978 chain 14424 chr6 170805979 + 94840794 94841031 MSTA 426 + 151 426 62998 43 50 88 144 chain 536054 chr6 170805979 + 94851131 94857155 L1PA3long 6157 + 0 6157 1561 153 0 1 164 4 3 447 6 136 1350 4 6 954 0 1 2942 chain 20949 chr6 170805979 + 94905840 94906218 L1MA1 4479 + 3820 4190 55195 6 1 0 19 1 0 17 1 0 10 3 16 58 18 14 114 5 4 29 2 0 35 1 0 9 9 5 16 6 0 18 chain 70043 chr6 170805979 + 94911366 94912129 L1PA3long 6157 + 5386 6149 23985 763 chain 544511 chr6 170805979 + 94942138 94948159 L1PA2 6032 + 6 6032 1055 250 1 0 872 0 3 522 0 1 57 0 1 2604 0 1 196 1 0 1132 0 1 386 chain 30290 chr6 170805979 + 94968514 94969029 L1PA13 3608 + 2975 3477 41771 66 1 3 8 2 0 76 1 0 33 1 0 109 7 5 31 13 14 16 1 0 18 18 17 20 1 0 5 2 0 48 2 0 4 2 0 18 1 0 11 chain 5153 chr6 170805979 + 94991369 94991450 THE1-int 844 + 755 831 84900 17 2 0 34 1 0 20 2 0 5 chain 9843 chr6 170805979 + 95093711 95093825 L1PA7 6471 + 6352 6466 70733 114 chain 28303 chr6 170805979 + 95121478 95121786 L1PA3long 6157 + 5849 6157 44408 308 chain 38744 chr6 170805979 + 95140746 95141237 LTR3B_ 500 + 0 483 35534 302 4 0 80 1 0 21 3 0 80 chain 39291 chr6 170805979 + 95154877 95155321 L1PA4 6152 + 5702 6146 35155 204 4 0 104 0 4 132 chain 5835 chr6 170805979 + 95170982 95171143 L1MCb 1641 + 182 338 81758 58 79 74 24 chain 11525 chr6 170805979 + 95178731 95178934 L1PA8 5853 + 5643 5843 67706 27 25 23 58 11 10 82 chain 17386 chr6 170805979 + 95190791 95190979 L1PA2 6032 + 5830 6018 59375 188 chain 11435 chr6 170805979 + 95332136 95332291 MER4B 649 + 1 157 67856 114 9 10 32 chain 96468 chr6 170805979 + 95336613 95337794 L1PA7 6471 + 5268 6467 18720 85 0 1 238 0 1 21 0 4 441 1 12 45 0 5 340 4 0 6 chain 237350 chr6 170805979 + 95378110 95380979 L1PA7 6471 + 3587 6456 8541 415 1 0 203 0 1 25 0 1 131 0 1 4 1 0 14 0 1 566 4 0 643 0 1 21 1 0 13 0 1 680 7 8 140 chain 6086 chr6 170805979 + 95454953 95455019 L1P3 4156 + 1111 1177 80777 66 chain 90432 chr6 170805979 + 95457243 95458370 L1PA3long 6157 + 5036 6157 19603 78 6 0 382 0 1 401 1 0 259 chain 508022 chr6 170805979 + 95471436 95477584 L1PA6 6164 + 0 6160 2847 199 4 5 306 1 0 68 4 12 127 13 12 27 9 8 377 0 2 299 0 9 881 1 2 81 0 1 767 6 7 50 5 9 269 0 1 4 0 1 413 21 0 1129 0 1 215 20 20 202 0 1 17 0 1 479 0 7 145 3 0 6 chain 4406 chr6 170805979 + 95485854 95485953 L1MA3 4352 + 4260 4352 88864 22 11 9 23 1 0 14 6 2 22 chain 7975 chr6 170805979 + 95497478 95497679 LTR12C 1709 + 1037 1203 74942 20 41 0 14 0 47 41 41 0 44 chain 2748 chr6 170805979 + 95497716 95497834 LTR12C 1709 + 992 1032 101987 20 78 0 20 chain 3895 chr6 170805979 + 95520263 95520319 MER65C 458 + 151 316 92176 46 0 109 10 chain 9144 chr6 170805979 + 95524596 95525095 LTR12D 1347 + 437 1049 72248 99 297 444 23 58 24 22 chain 72127 chr6 170805979 + 95583935 95584908 MER11A 1151 + 0 1151 23503 45 10 109 141 1 0 31 0 2 60 1 13 42 0 1 93 0 1 22 1 0 95 0 29 124 0 1 7 16 49 52 0 1 53 1 2 100 0 1 11 16 15 51 chain 98573 chr6 170805979 + 95643539 95644957 L1PA11 4918 + 9 1425 18470 5 1 0 28 2 0 40 0 13 17 7 6 10 2 0 53 1 0 32 11 7 34 2 1 61 0 1 23 0 1 173 0 1 170 0 2 123 1 0 98 9 7 51 40 41 341 9 3 74 chain 76382 chr6 170805979 + 95650838 95651879 MER11C 1089 + 0 1064 22470 150 0 2 94 0 9 62 0 4 21 1 0 44 1 0 19 0 6 121 46 44 35 5 7 58 1 0 4 10 14 5 1 0 38 0 1 127 0 1 54 1 0 77 0 1 66 chain 156075 chr6 170805979 + 95666121 95667807 L1PA2 6032 + 4346 6032 11998 1686 chain 23103 chr6 170805979 + 95670591 95670924 LTR12C 1709 + 691 1079 52207 146 1 0 90 6 5 44 2 43 18 3 19 23 chain 195588 chr6 170805979 + 95708213 95710385 L1PA4 6152 + 3707 5881 9858 832 0 1 753 1 2 586 chain 254975 chr6 170805979 + 95719127 95722265 L1PA7 6471 + 2845 6459 8112 41 0 4 206 0 4 117 0 1 110 0 1 81 0 1 118 3 2 470 3 0 167 0 5 98 13 12 18 0 2 63 3 4 11 0 442 132 1 0 176 0 5 186 8 24 275 1 0 561 0 2 133 1 0 142 chain 551303 chr6 170805979 + 95758386 95764412 L1PA2 6032 + 1 6028 653 71 0 1 183 1 0 3539 0 1 2232 chain 11401 chr6 170805979 + 95792762 95792915 L1MC 810 + 607 759 67910 123 6 5 24 chain 322732 chr6 170805979 + 95820296 95824980 L1PB1 5432 + 111 5424 6359 56 12 4 219 32 24 116 60 34 38 1 0 83 3 6 290 13 14 182 0 4 83 0 3 5 4 1 122 32 23 126 0 4 420 0 3 354 0 1 167 13 3 272 2 764 189 0 5 68 7 0 41 2 1 58 0 1 57 4 5 450 0 1 4 1 0 84 4 5 118 0 3 86 2 0 96 10 18 192 0 2 30 0 1 5 1 0 51 66 6 6 5 0 23 2 0 8 17 12 9 2 0 53 2 1 16 1 0 41 6 5 13 3 0 7 23 14 10 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 162881 chr6 170805979 + 95863901 95904227 L1PA3long 6157 + 3059 6157 11553 629 2 1 852 37774 546 927 0 1 142 chain 6714 chr6 170805979 + 95899656 95899740 THE1C 375 + 292 375 78594 58 1 0 25 chain 11285 chr6 170805979 + 95925072 95925222 L1PA7 6471 + 6319 6468 68105 131 1 2 7 2 0 9 chain 6474 chr6 170805979 + 95974451 95974605 Tigger4a 237 + 0 141 79428 66 63 50 25 chain 142226 chr6 170805979 + 95982394 95983914 L1HS 6032 + 2021 3541 12915 1520 chain 73087 chr6 170805979 + 95989454 95990445 MER11A 1151 + 0 1137 23303 58 0 98 130 12 8 32 0 2 205 0 1 3 0 1 21 1 0 9 0 1 102 20 22 52 0 4 70 6 40 49 0 9 168 1 0 52 chain 43260 chr6 170805979 + 96008185 96008680 L1PA7 6471 + 5966 6461 32604 495 chain 33204 chr6 170805979 + 96163324 96163748 MER57A1 433 + 0 433 39346 136 5 0 121 6 20 156 chain 260166 chr6 170805979 + 96191204 96194211 L1PA5 6144 + 3105 6142 7965 91 1 0 435 9 12 39 0 26 559 0 1 943 0 1 930 chain 28077 chr6 170805979 + 96221148 96221496 L1PA8 5853 + 4864 5211 44754 145 5 0 39 0 4 159 chain 42480 chr6 170805979 + 96262232 96263027 L1MA1 4479 + 3435 4186 33074 27 1 2 49 1 0 68 10 15 49 13 28 42 1 0 24 2 0 16 1 0 67 21 17 7 2 0 7 2 0 71 2 1 4 0 1 15 2 1 6 3 0 29 33 0 97 1 0 29 2 0 33 2 1 10 1 0 6 26 16 13 chain 31875 chr6 170805979 + 96326917 96327507 L1PA14 3548 + 2904 3465 40436 6 0 4 16 21 9 14 2 0 42 21 18 60 1 3 31 11 7 17 2 0 5 2 1 84 1 0 59 0 6 45 1 0 11 5 1 35 4 2 13 1 0 5 1 0 17 1 0 38 6 0 12 chain 5303 chr6 170805979 + 96398123 96398228 L1PA17 2846 + 2592 2692 84186 8 1 0 32 1 0 9 13 12 31 2 0 8 chain 11224 chr6 170805979 + 96403315 96403455 LTR8 732 + 592 732 68213 140 chain 16517 chr6 170805979 + 96404068 96404607 HUERS-P1-int 2401 + 243 683 60346 34 3 0 14 2 0 7 1 0 15 165 104 13 3 0 6 1 0 37 1 0 8 2 0 24 22 1 24 1 0 5 2 0 9 39 28 12 2 12 87 chain 107800 chr6 170805979 + 96414896 96417056 L1PA16 3655 + 1728 3563 17352 67 7 6 48 4 5 147 1 0 238 3 0 28 2 0 350 11 12 46 1 0 137 7 0 33 65 97 40 0 2 18 11 12 27 529 168 56 6 9 17 26 37 87 10 11 21 1 0 116 chain 387988 chr6 170805979 + 96438197 96442757 L1PA6 6164 + 1590 6162 5355 370 3 0 92 0 4 7 8 11 29 2 1 310 0 1 159 0 1 614 0 1 28 1 2 189 0 1 1269 1 0 443 0 1 879 6 6 142 0 4 8 chain 152516 chr6 170805979 + 96442842 96445044 L1PBa 3878 + 244 2363 12199 280 1 0 232 7 8 220 6 3 38 95 11 101 7 0 78 0 1 197 1 0 34 0 2 16 0 4 69 2 1 78 34 13 336 8 4 55 0 34 78 11 6 140 0 1 37 7 8 34 chain 32370 chr6 170805979 + 96559906 96560299 L1PA7 6471 + 6078 6470 40061 388 1 0 4 chain 6922 chr6 170805979 + 96622115 96622448 L1MB7 1623 + 1113 1429 77872 12 0 14 48 223 192 50 chain 498157 chr6 170805979 + 96637755 96643459 L1PA4 6152 + 2 6136 3196 302 1 0 836 0 1 103 1 0 709 0 98 266 1 2 575 1 0 378 0 1 715 1 0 177 1 2 191 0 2 244 0 356 273 18 0 401 0 3 10 13 0 324 1 0 94 0 3 68 chain 28733 chr6 170805979 + 96684815 96685203 THE1B-int 1605 + 0 370 43740 179 25 4 58 0 3 126 chain 29219 chr6 170805979 + 96695694 96696227 L1PB1 5432 + 4912 5419 43020 43 0 1 108 0 1 17 18 23 9 1 0 26 1 0 6 1 0 12 4 0 11 2 0 50 3 2 10 6 5 44 1 0 16 3 0 6 16 6 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 15 chain 112841 chr6 170805979 + 96730658 96732005 L1PA7 6471 + 5117 6467 16696 386 5 0 107 4 1 9 4 12 77 6 7 596 0 2 153 chain 12646 chr6 170805979 + 96753088 96753253 L1PA8 5853 + 5690 5853 65721 50 2 1 19 1 0 93 chain 166997 chr6 170805979 + 96770170 96773599 L1PA10 4194 + 1832 4161 11268 183 12 16 209 25 18 260 336 18 73 0 13 8 23 6 134 2 1 191 4 5 39 0 1 20 0 5 167 0 5 86 0 1 63 0 2 163 3 4 97 832 0 175 0 46 244 34 31 34 1 0 11 chain 68623 chr6 170805979 + 96772282 96773063 L1PA5 6144 + 5356 6138 24306 176 0 1 33 1 2 323 1 0 247 chain 73761 chr6 170805979 + 96818723 96819682 L1PA8 5853 + 4890 5853 23151 23 0 1 84 3 0 8 0 9 124 0 3 54 4 0 40 0 2 324 1 0 24 1 3 19 2 0 70 2 1 13 11 10 38 2 1 112 chain 24811 chr6 170805979 + 96849421 96849878 L1PA15 4387 + 3912 4366 49577 20 1 0 16 0 1 155 6 5 20 17 32 18 0 1 5 1 0 22 4 0 9 2 1 50 30 27 20 3 1 14 5 0 20 1 0 8 1 0 9 chain 26854 chr6 170805979 + 96851174 96851464 AluYa5 310 + 10 299 46465 87 1 0 202 chain 9054 chr6 170805979 + 96859173 96859359 THE1B 368 + 173 368 72438 25 35 45 19 16 15 91 chain 119901 chr6 170805979 + 96859376 96860931 THE1B-int 1605 + 17 1600 15555 16 8 9 110 1 0 4 0 1 35 0 3 233 1 26 178 6 7 192 11 9 741 2 1 5 0 1 12 chain 5835 chr6 170805979 + 96915770 96915834 MER34A 573 + 9 73 81765 64 chain 151694 chr6 170805979 + 96987425 96989106 L1PA4 6152 + 4462 6143 12245 1681 chain 8803 chr6 170805979 + 97000829 97001172 L1MC1 2226 + 1873 2181 72984 12 9 3 29 73 69 6 2 0 41 0 1 8 57 47 14 3 1 17 1 0 6 19 9 16 1 0 29 chain 14090 chr6 170805979 + 97329464 97329637 THE1B-int 1605 + 1425 1598 63472 173 chain 114449 chr6 170805979 + 97407852 97409576 L1PA8 5853 + 4419 5853 16481 591 0 1 459 302 0 52 0 1 41 1 0 45 5 20 53 1 0 5 19 18 35 2 1 19 2 1 92 chain 24410 chr6 170805979 + 97408915 97409204 L1PA5 6144 + 5855 6141 50154 146 0 1 104 4 0 35 chain 37662 chr6 170805979 + 97411980 97412467 MER75 514 + 11 511 36296 278 1 3 32 0 18 146 7 0 23 chain 29049 chr6 170805979 + 97436560 97436872 AluYb8 318 + 0 310 43252 132 2 0 178 chain 93269 chr6 170805979 + 97517005 97518087 L1PA4 6152 + 4300 6139 19149 7 0 3 41 0 4 557 4 754 473 chain 20531 chr6 170805979 + 97581513 97581763 L1PA6 6164 + 5913 6162 55742 96 2 1 152 chain 7005 chr6 170805979 + 97611189 97611303 L1MA3 4352 + 3849 3965 77585 38 12 14 64 chain 217288 chr6 170805979 + 97737052 97739715 L1PA7 6471 + 3767 6424 9112 895 0 20 273 1 0 240 0 4 418 40 7 76 0 2 8 1 0 549 0 2 36 11 12 115 chain 39813 chr6 170805979 + 97779487 97779947 LTR7 482 + 0 482 34807 15 6 0 36 3 0 195 0 31 205 chain 289783 chr6 170805979 + 97779949 97783611 HERVH-int 3825 + 0 3816 7132 532 5 0 38 1 0 9 2 1 9 4 0 14 49 1 15 1 0 12 3 0 25 42 0 42 13 32 49 1 0 444 15 0 462 4 31 37 2 0 792 0 18 428 128 341 484 chain 40664 chr6 170805979 + 97784871 97785325 LTR7 482 + 0 482 34177 51 3 0 195 0 31 205 chain 513560 chr6 170805979 + 97794643 97800532 L1PA4 6152 + 8 5901 2596 1218 1 0 6 0 1 1984 0 1 88 0 1 627 12 11 222 0 1 531 0 1 519 0 1 681 chain 72107 chr6 170805979 + 97837496 97838668 L1PB1 5432 + 4288 5424 23513 173 26 10 14 6 7 136 4 1 74 0 2 105 9 11 150 1 0 4 0 1 38 0 2 63 0 4 17 4 3 14 0 1 20 1 0 9 16 11 11 2 0 51 2 1 16 1 0 21 90 74 16 2 0 22 1 0 21 1 4 9 1 0 16 1 0 4 chain 82503 chr6 170805979 + 97906615 97907589 L1P2 5180 + 1307 2282 21119 148 1 0 29 0 1 49 2 3 745 chain 33203 chr6 170805979 + 98166614 98167057 MLT2A1 477 + 0 477 39349 73 0 2 4 0 1 88 5 2 223 10 44 40 chain 453297 chr6 170805979 + 98167057 98172936 HERVL-int 5654 + 0 5645 4298 391 0 1 27 0 2 425 1 2 171 0 11 324 12 1 551 0 2 29 0 10 21 13 14 331 0 8 794 0 1 1223 0 35 164 0 2 26 0 3 98 0 1 29 3 4 249 307 0 398 0 4 101 0 1 191 chain 35802 chr6 170805979 + 98172945 98173383 MLT2A1 477 + 0 475 37523 169 4 1 213 0 40 52 chain 2839 chr6 170805979 + 98188420 98188465 MER131 149 + 36 81 101331 23 1 2 12 1 0 8 chain 36957 chr6 170805979 + 98207421 98207857 L1PA7 6471 + 6024 6461 36766 289 0 1 147 chain 14429 chr6 170805979 + 98259700 98259998 THE1D 372 + 0 324 62995 37 51 49 79 45 73 86 chain 25141 chr6 170805979 + 98351544 98351813 L1PA4 6152 + 5874 6143 49055 269 chain 277025 chr6 170805979 + 98391592 98394653 L1PA3long 6157 + 875 3936 7519 171 2 1 1463 6 7 1419 chain 249938 chr6 170805979 + 98411959 98414993 L1PA7 6471 + 3411 6469 8240 92 1 0 324 0 5 236 0 1 761 0 1 18 0 1 66 1 12 63 0 2 550 0 1 64 0 1 12 1 0 79 0 2 240 1 3 375 10 9 140 chain 556325 chr6 170805979 + 98416502 98422520 L1PA2 6032 + 4 6023 345 1552 0 1 4466 chain 77957 chr6 170805979 + 98435707 98436896 L1MA2 4263 + 2583 3753 22108 57 7 5 52 5 0 42 3 4 20 4 5 28 6 5 24 32 22 63 5 4 242 5 6 201 0 3 154 1 0 4 0 1 42 8 6 11 19 16 62 1 0 91 chain 6342 chr6 170805979 + 98438112 98438191 L1MCa 1829 + 666 745 79857 79 chain 30159 chr6 170805979 + 98445527 98445920 MLT2A1 477 + 0 393 41881 163 14 11 29 1 2 177 0 2 9 chain 153048 chr6 170805979 + 98480739 98482503 L1PA5 6144 + 4359 6127 12174 767 0 1 215 1 4 29 0 1 423 7 6 322 chain 4673 chr6 170805979 + 98522427 98522482 L1PA5 6144 + 5239 5294 87424 55 chain 75129 chr6 170805979 + 98522482 98523331 L1PA5 6144 + 5295 6144 22809 849 chain 25447 chr6 170805979 + 98532132 98532477 LTR18A 364 + 6 364 48558 214 21 34 110 chain 476397 chr6 170805979 + 98703059 98708320 L1HS 6032 + 3 5264 3709 1578 0 1 609 1 0 193 0 2 675 1 0 1693 1 0 510 chain 26911 chr6 170805979 + 98740982 98741350 THE1C 375 + 0 375 46393 38 0 8 79 3 0 78 3 6 141 1 0 25 chain 74968 chr6 170805979 + 98745001 98746148 L1PB2 3958 + 2716 3838 22848 19 11 12 32 7 8 125 17 16 162 15 8 74 18 4 133 2 0 51 0 3 14 5 0 62 2 0 13 3 0 46 0 1 45 2 0 34 5 7 32 1 0 64 1 0 22 0 4 46 2 0 21 5 4 37 0 3 8 0 1 11 chain 4623 chr6 170805979 + 98762017 98762076 Tigger1 2417 + 2234 2292 87687 18 1 0 40 chain 56286 chr6 170805979 + 98763208 98763943 L1P3 4156 + 3370 4105 27489 112 0 1 4 1 0 7 1 0 74 1 2 39 1 0 46 0 1 131 0 1 44 5 6 168 8 6 93 chain 24001 chr6 170805979 + 98796812 98797276 L1PB1 5432 + 4987 5424 50790 116 1 2 10 3 0 23 1 0 5 21 16 8 2 0 10 0 2 41 2 1 16 1 0 44 1 0 15 3 0 15 9 0 11 0 1 4 10 7 12 2 0 24 1 0 22 0 3 9 1 0 16 1 0 4 chain 4204 chr6 170805979 + 98798377 98798453 L1MA4 2864 + 2727 2795 90094 10 6 0 28 3 1 29 chain 3301 chr6 170805979 + 98814137 98814176 MER5B 177 + 4 43 97003 39 chain 165697 chr6 170805979 + 98866564 98868367 L1PA3long 6157 + 4354 6157 11355 1005 0 1 780 1 0 17 chain 548157 chr6 170805979 + 98910689 98916818 L1PA3long 6157 + 0 6147 850 971 0 2 120 0 3 1414 0 1 264 0 11 384 2 1 74 0 1 492 2 0 1566 0 4 590 1 0 249 chain 63283 chr6 170805979 + 98956717 98957459 L1PA7 6471 + 5726 6470 25567 410 0 1 183 7 8 142 chain 12497 chr6 170805979 + 99013011 99013162 Tigger3c 601 + 437 588 65991 151 chain 26177 chr6 170805979 + 99026484 99026839 THE1B 368 + 3 368 47461 41 6 21 96 13 12 19 4 0 176 chain 39006 chr6 170805979 + 99055936 99056457 MLT2A2 560 + 0 560 35353 94 3 0 86 1 0 130 8 40 52 0 11 147 chain 53525 chr6 170805979 + 99096862 99097661 L1PB3 3668 + 2479 3286 28386 117 51 54 17 5 6 24 8 9 123 0 1 158 4 6 11 3 0 38 0 1 41 2 1 57 0 3 140 chain 26342 chr6 170805979 + 99128115 99128389 AluYd8 298 + 0 274 47212 274 chain 134632 chr6 170805979 + 99141342 99142878 SVA_D 2077 + 0 2074 13580 594 0 40 125 45 5 153 0 538 619 chain 3662 chr6 170805979 + 99161243 99161394 LTR41 747 + 551 706 93895 16 97 101 38 chain 32642 chr6 170805979 + 99194179 99194650 MER1A 529 + 49 529 39816 43 0 4 76 26 27 95 0 1 104 3 0 54 12 18 58 chain 554895 chr6 170805979 + 99204287 99210436 L1PA3long 6157 + 4 6155 419 2894 1 0 272 1 2 2312 0 1 399 0 1 270 chain 92594 chr6 170805979 + 99212823 99214381 L1PA16 3655 + 2116 3619 19258 117 1 0 229 12 11 16 1 2 97 0 1 82 8 7 91 2 1 133 46 35 53 7 6 16 9 3 185 1 0 17 85 73 119 0 1 83 68 71 12 3 0 13 24 6 7 5 0 16 chain 100592 chr6 170805979 + 99253307 99254753 HUERS-P2-int 2744 + 1253 2738 18226 132 1 2 168 0 1 17 5 2 354 0 17 27 0 8 99 1 8 164 35 63 60 11 10 55 1 0 72 2 0 32 4 0 35 0 3 9 1 0 7 28 25 33 3 0 4 1 0 24 6 5 9 2 0 5 2 0 12 2 0 23 chain 46221 chr6 170805979 + 99260954 99261465 L1PA4 6152 + 5635 6146 30949 511 chain 16502 chr6 170805979 + 99368571 99368772 L1PA7 6471 + 6265 6466 60367 201 chain 72185 chr6 170805979 + 99429370 99430327 LTR5_Hs 974 + 0 974 23487 289 0 1 177 0 1 174 2 0 5 8 9 163 8 15 16 26 35 89 chain 492284 chr6 170805979 + 99447524 99453184 L1PA5 6144 + 462 6144 3364 12 5 1 473 0 4 492 0 4 82 0 11 296 0 4 259 0 3 273 0 2 72 15 0 240 0 3 465 3 0 951 0 1 231 0 4 312 0 1 562 0 1 76 0 4 76 1 0 749 1 4 14 chain 82701 chr6 170805979 + 99456431 99457473 MER11C 1089 + 3 1064 21083 243 0 9 62 0 4 65 1 0 47 1 2 122 0 1 111 0 1 17 1 5 7 1 0 38 0 1 127 0 1 54 1 0 144 chain 13204 chr6 170805979 + 99478556 99478726 L1PA16 3655 + 3290 3456 64773 148 4 0 18 chain 7926 chr6 170805979 + 99526096 99526203 HY1 111 + 0 111 75052 16 1 0 22 1 3 21 0 3 46 chain 6641 chr6 170805979 + 99557419 99557503 MLT1B 390 + 17 99 78838 8 2 0 74 chain 25341 chr6 170805979 + 99622048 99622382 THE1A 353 + 0 341 48725 19 5 6 86 1 0 50 0 1 40 2 0 114 0 8 17 chain 137194 chr6 170805979 + 99626455 99628110 L1PA7 6471 + 4783 6469 13323 172 1 0 241 2 1 36 0 33 215 0 3 138 2 0 51 4 1 170 0 1 291 0 1 332 chain 289209 chr6 170805979 + 99655158 99658409 L1PA5 6144 + 1278 4531 7155 923 1 0 105 1 0 755 0 4 136 0 1 307 1 0 1022 chain 64970 chr6 170805979 + 99691936 99692658 L1PA4 6152 + 5404 6141 25195 361 0 15 361 chain 70174 chr6 170805979 + 99693570 99694383 L1PA6 6164 + 5339 6162 23959 258 4 14 551 chain 500247 chr6 170805979 + 99702129 99708110 L1PA6 6164 + 0 6156 3122 237 0 2 59 0 1 15 6 5 154 5 8 36 0 2 48 1 0 1533 0 2 223 13 0 24 9 0 249 6 27 558 1 2 4 0 1 260 0 162 750 0 4 147 0 2 163 10 11 626 3 0 547 0 1 54 5 4 235 chain 20314 chr6 170805979 + 99721774 99722013 THE1D-int 1627 + 0 239 55996 239 chain 5731 chr6 170805979 + 99813595 99813808 MLT1A0 366 + 119 346 82218 32 11 15 7 3 0 17 26 40 36 66 65 15 chain 72202 chr6 170805979 + 99815144 99815960 L1PA5 6144 + 5328 6142 23484 269 0 1 259 0 1 277 4 0 7 chain 553049 chr6 170805979 + 99823597 99829594 L1PA2 6032 + 20 6030 543 3045 0 13 2952 chain 322667 chr6 170805979 + 99855904 99860264 L1P2 5180 + 744 5075 6360 41 5 20 56 10 0 8 11 21 33 0 1 28 1 0 4 11 12 53 23 24 4 1 0 76 0 4 188 12 13 385 0 1 236 1 0 341 98 28 8 0 1 198 0 1 257 0 4 425 11 9 689 5 6 81 0 23 8 19 1 207 1 0 6 5 6 63 0 1 36 1 9 129 1 3 504 1 0 79 chain 4736 chr6 170805979 + 99864745 99864805 MER53 195 + 0 60 87048 60 chain 32249 chr6 170805979 + 99900090 99900460 L1PA4 6152 + 5780 6151 40148 193 5 6 172 chain 5528 chr6 170805979 + 99914596 99914666 MER5A1 166 + 8 78 83120 70 chain 69366 chr6 170805979 + 99960287 99961107 L1PA6 6164 + 4459 5281 24149 345 0 2 475 chain 28504 chr6 170805979 + 99961108 99961490 L1PA6 6164 + 5289 5788 44124 29 0 1 54 42 158 257 chain 29615 chr6 170805979 + 99961490 99961842 L1PA6 6164 + 5789 6141 42464 352 chain 4051 chr6 170805979 + 100005118 100005169 L1MD3 1191 + 95 146 91073 51 chain 264321 chr6 170805979 + 100029832 100032763 L1PA3long 6157 + 2400 6157 7843 320 0 831 1832 1 0 314 4 0 460 chain 65747 chr6 170805979 + 100039670 100040512 L1P2 5180 + 1341 2183 25014 413 1 2 71 11 10 346 chain 325615 chr6 170805979 + 100040596 100044879 L1PA7 6471 + 2488 6459 6290 76 4 12 56 17 0 96 8 0 50 0 1 201 6 4 50 0 1 61 0 4 297 319 0 99 0 1 299 9 1 39 1 0 172 0 1 66 5 6 109 0 13 71 1 0 350 0 1 43 0 4 154 0 4 657 6 9 125 1 0 178 0 1 160 0 1 167 0 1 330 chain 67204 chr6 170805979 + 100071731 100072475 L1PA3long 6157 + 3274 4018 24646 744 chain 29427 chr6 170805979 + 100086555 100086863 AluYk12 309 + 0 308 42699 308 chain 29047 chr6 170805979 + 100195412 100195777 L1PA5 6144 + 5780 6144 43255 92 1 0 109 15 8 11 0 7 137 chain 553147 chr6 170805979 + 100196461 100202490 L1PA2 6032 + 2 6032 538 315 2 1 4889 0 1 59 0 1 598 1 6 5 5 0 155 chain 28031 chr6 170805979 + 100224088 100224435 L1PA7 6471 + 6107 6455 44813 289 3 4 55 chain 29266 chr6 170805979 + 100272715 100273054 L1PA5 6144 + 5804 6143 42939 339 chain 5464 chr6 170805979 + 100340417 100340480 L1ME1 1623 + 1142 1205 83383 63 chain 549997 chr6 170805979 + 100354703 100360725 L1PA2 6032 + 0 6031 748 74 0 1 105 0 1 75 1 0 480 1 0 385 1 0 1143 2 6 2246 0 5 236 0 1 1273 chain 44917 chr6 170805979 + 100415695 100416261 LTR19B 566 + 0 566 31627 296 6 7 186 5 7 21 10 7 42 chain 28804 chr6 170805979 + 100424959 100425313 THE1A 353 + 0 353 43623 110 1 0 243 chain 51371 chr6 170805979 + 100437927 100438747 L1PB2 3958 + 3032 3838 29090 73 4 6 122 0 2 72 2 0 21 34 33 13 4 0 65 2 0 10 8 4 92 28 27 45 1 0 62 1 0 74 2 0 21 2 1 18 0 1 44 chain 76080 chr6 170805979 + 100499070 100499999 L1P2 5180 + 1481 2404 22547 141 0 1 703 7 0 78 chain 36481 chr6 170805979 + 100500001 100500435 L1P3 4156 + 2717 3154 37087 185 1 0 191 0 4 57 chain 5258 chr6 170805979 + 100528574 100528638 MER41B 635 + 482 546 84402 64 chain 14974 chr6 170805979 + 100621361 100621671 L1PA11 4918 + 4291 4578 62294 40 2 1 56 9 8 11 2 0 68 2 0 14 1 0 13 27 18 10 13 9 10 6 5 13 2 0 11 chain 111924 chr6 170805979 + 100699520 100701013 THE1B-int 1605 + 0 1605 16826 53 4 5 175 0 11 188 0 25 309 0 49 134 34 57 234 1 0 136 1 2 25 0 1 71 1 2 122 0 1 5 chain 19130 chr6 170805979 + 100701276 100701535 THE1B 368 + 110 368 57420 41 0 2 19 3 2 26 2 0 168 chain 17564 chr6 170805979 + 100736261 100736477 AluSc5 308 + 39 257 59158 91 0 1 42 4 5 79 chain 32873 chr6 170805979 + 100818916 100819321 L1PA6 6164 + 5755 6162 39610 76 0 1 171 8 8 136 1 0 4 0 2 9 chain 17091 chr6 170805979 + 100887473 100887842 L1PB1 5432 + 5094 5430 59708 9 1 2 9 3 0 21 1 0 12 1 0 11 5 1 8 2 0 55 17 14 44 1 0 12 15 5 28 11 9 12 2 0 24 1 0 21 1 0 13 1 0 16 2 0 10 chain 22428 chr6 170805979 + 100893574 100893821 L1PA2 6032 + 5785 6031 53235 234 1 0 12 chain 79766 chr6 170805979 + 100896946 100898052 MER61-int 3695 + 1611 2723 21675 56 0 1 68 2 0 87 11 13 193 13 8 73 8 11 17 2 1 13 5 17 414 9 6 26 2 0 8 0 1 43 0 1 8 2 1 46 chain 47207 chr6 170805979 + 100907124 100907700 L1PA7 6471 + 5883 6462 30568 254 0 2 116 0 1 206 chain 260813 chr6 170805979 + 100947618 100951873 HERVK22-int 3844 + 0 3844 7949 43 3 0 698 0 1 90 0 1 403 0 5 327 1 5 464 1 21 21 0 3 322 0 1 165 4 240 186 0 1 50 2 1 59 38 35 36 1 0 20 2 0 33 13 9 7 1 0 45 2 0 14 26 15 10 2 0 6 15 9 10 1 0 7 66 48 20 11 6 28 1 0 5 814 193 79 16 15 87 chain 504659 chr6 170805979 + 100968726 100975521 L1PA6 6164 + 4 6162 2983 233 0 2 280 0 2 46 1 0 11 0 16 427 1 0 282 0 1 61 12 11 125 0 4 185 0 1 475 14 2 166 4 0 57 672 0 199 25 12 477 0 3 1280 0 4 294 15 33 622 1 0 268 0 1 59 0 1 354 1 16 148 chain 70346 chr6 170805979 + 100992035 100992878 L1PA7 6471 + 5604 6449 23904 12 1 4 19 1 0 127 1 0 519 0 1 163 chain 498948 chr6 170805979 + 101062008 101069270 L1PA6 6164 + 0 6161 3163 449 8 0 120 1 0 218 0 17 650 3 4 92 16 18 154 1 0 62 0 1 27 0 1 1858 1155 26 291 2 0 155 0 5 656 3 21 64 6 10 409 0 4 180 0 1 204 6 0 134 0 1 320 9 0 9 chain 27291 chr6 170805979 + 101070732 101071075 LTR12C 1709 + 773 1203 45836 64 1 0 155 0 41 40 0 47 83 chain 11594 chr6 170805979 + 101071076 101071216 LTR12C 1709 + 837 977 46498 140 chain 49961 chr6 170805979 + 101099219 101099811 L1PA7 6471 + 5119 5709 29580 301 1 0 200 2 1 88 chain 10849 chr6 170805979 + 101133200 101133546 MLT1A0 366 + 9 349 68779 34 12 0 36 44 52 33 130 128 57 chain 491762 chr6 170805979 + 101188160 101193872 L1PA5 6144 + 5 5734 3379 50 0 13 793 0 1 307 9 0 66 7 6 569 0 2 501 0 1 850 2 1 118 1 2 390 1 2 166 1 0 1150 0 9 524 0 1 207 chain 201824 chr6 170805979 + 101258340 101261036 Charlie3 2679 + 19 2679 9648 15 3 2 21 1 8 259 0 4 63 0 1 5 0 4 35 2 7 181 0 1 308 2 0 491 3 5 92 50 0 199 1 9 52 1 2 353 9 6 334 0 4 117 37 20 62 chain 43432 chr6 170805979 + 101516084 101516625 L1PB1 5432 + 3813 4352 32487 335 0 1 20 1 0 150 3 1 32 chain 18418 chr6 170805979 + 101591857 101592229 MSTB 430 + 0 412 58209 83 1 2 35 40 38 14 0 3 13 28 62 37 14 18 52 2 0 6 1 3 46 chain 97692 chr6 170805979 + 101635343 101636507 L1PA7 6471 + 5298 6467 18565 325 0 4 420 5 7 83 2 0 143 0 1 186 chain 16090 chr6 170805979 + 101783220 101783501 THE1D 372 + 90 370 60906 71 62 63 116 1 0 20 1 0 10 chain 18526 chr6 170805979 + 101784328 101784554 THE1D-int 1627 + 1394 1620 58076 226 chain 4174 chr6 170805979 + 101836436 101836515 MER33 330 + 133 214 90300 11 4 11 23 6 0 13 0 1 22 chain 11432 chr6 170805979 + 101877320 101877481 MER2 342 + 87 251 67862 15 0 2 12 8 9 126 chain 540329 chr6 170805979 + 102088197 102094223 L1PA3long 6157 + 1 6157 1319 5 3 0 146 0 1 415 0 4 204 0 128 4228 1 0 882 0 1 142 chain 9647 chr6 170805979 + 102102424 102102532 LTR7 482 + 374 482 71171 108 chain 272285 chr6 170805979 + 102102534 102105993 HERVH-int 3825 + 0 3825 7648 212 8 19 259 6 114 14 1 0 11 33 27 20 16 36 11 0 1 5 1 0 50 0 1 4 2 0 242 0 3 318 5 1 83 9 0 42 1 0 67 0 1 144 6 35 372 4 9 279 0 6 6 7 1 304 0 1 422 8 218 487 chain 37624 chr6 170805979 + 102107758 102108211 LTR7 482 + 0 482 36323 56 5 3 171 0 31 221 chain 2546 chr6 170805979 + 102128263 102128329 L1MA3 4352 + 4279 4347 103395 4 1 0 5 1 0 22 16 20 17 chain 4004 chr6 170805979 + 102155794 102155859 L1MA1 4479 + 284 350 91420 36 7 8 22 chain 182993 chr6 170805979 + 102167125 102169478 L1PA8 5853 + 3501 5853 10439 90 1 0 99 0 1 65 0 1 402 0 3 178 2 1 62 0 1 36 0 1 569 2 0 74 0 2 338 0 1 137 1 0 46 2 0 70 2 1 9 18 17 31 8 7 17 12 11 82 chain 531529 chr6 170805979 + 102169866 102175696 L1PA2 6032 + 205 6029 1773 51 1 0 72 3 0 472 0 1 374 2 0 2435 1 0 2419 chain 3287 chr6 170805979 + 102200199 102200412 MER6B 211 + 0 211 97137 18 101 99 94 chain 6722 chr6 170805979 + 102203216 102203290 THE1B-int 1605 + 1524 1598 78566 74 chain 163326 chr6 170805979 + 102246032 102248094 L1PA7 6471 + 4395 6468 11529 15 8 7 191 0 1 6 0 7 527 11 12 164 0 1 28 1 0 270 1 4 669 10 9 6 0 2 133 8 7 14 chain 52258 chr6 170805979 + 102256364 102257014 L1PA8 5853 + 4529 5183 28801 51 0 4 372 0 2 52 10 8 165 chain 231354 chr6 170805979 + 102265779 102268745 L1PA7 6471 + 3497 6468 8713 47 2 11 276 2 0 33 0 1 152 4 12 457 1 2 145 0 1 189 0 1 6 3 2 130 1 0 5 4 5 13 59 43 176 0 1 329 0 1 86 0 3 6 4 5 677 9 10 139 4 0 7 chain 74765 chr6 170805979 + 102276587 102277426 L1PA5 6144 + 3302 4141 22900 839 chain 29575 chr6 170805979 + 102292726 102293160 LTR7Y 441 + 0 441 42511 103 9 0 57 68 84 197 chain 239198 chr6 170805979 + 102293160 102296350 HERVH-int 3825 + 0 2997 8492 265 7 5 219 2 0 11 37 31 39 65 0 34 112 0 15 1 0 12 24 21 21 67 0 25 0 20 11 2 1 49 1 0 133 1 21 752 4 31 534 1 0 728 0 1 18 chain 841 chr6 170805979 + 102293843 102293878 HERVH-int 3825 + 659 694 88787 35 chain 26685 chr6 170805979 + 102296895 102297331 LTR7Y 441 + 0 441 46704 105 9 0 55 69 84 67 4 3 127 chain 22453 chr6 170805979 + 102318867 102319224 THE1B 368 + 0 368 53192 13 2 0 26 4 9 126 1 0 24 43 52 118 chain 53420 chr6 170805979 + 102334158 102334741 L1PA3long 6157 + 5236 5823 28420 68 0 4 515 chain 30011 chr6 170805979 + 102334741 102335073 L1PA3long 6157 + 5824 6156 42040 332 chain 154370 chr6 170805979 + 102459462 102461638 L1PA8 5853 + 3695 5853 12092 102 8 9 63 11 10 31 0 4 40 9 0 386 0 1 154 34 11 93 0 1 4 1 0 47 6 9 182 0 1 135 1 2 29 2 0 268 0 1 130 0 1 50 6 6 99 1 0 37 8 11 12 0 1 25 18 22 7 1 0 8 0 6 6 8 1 23 0 1 20 1 0 16 1 0 93 chain 8151 chr6 170805979 + 102477207 102477322 MER30 238 + 77 228 74517 25 6 42 84 chain 94980 chr6 170805979 + 102536096 102537139 L1PA3long 6157 + 5106 6150 18910 901 0 1 142 chain 22318 chr6 170805979 + 102547996 102548335 THE1B 368 + 2 349 53388 24 0 1 13 0 15 113 2 0 8 1 2 14 5 0 27 1 0 72 3 0 7 13 15 36 chain 422726 chr6 170805979 + 102722105 102727093 L1PA2 6032 + 2 6032 4845 253 2 1 3413 281 1309 792 1 0 114 0 7 18 1 17 99 7 0 7 chain 19668 chr6 170805979 + 102758907 102759166 MLT2A2 560 + 285 560 56834 110 7 18 117 0 5 25 chain 49721 chr6 170805979 + 102796005 102796918 L1PB1 5432 + 4621 5420 29675 11 9 5 71 1 0 104 0 1 85 1 0 68 0 1 83 0 1 17 0 1 34 94 14 21 1 0 8 1 0 12 5 1 10 2 0 50 1 0 12 6 5 45 1 0 15 32 19 12 24 19 24 1 0 21 1 0 13 1 0 16 chain 3601 chr6 170805979 + 102818016 102818058 Tigger7 736 + 359 401 94422 42 chain 24068 chr6 170805979 + 102820720 102820994 L1HS 6032 + 971 1245 50702 274 chain 59235 chr6 170805979 + 102842306 102843014 L1PA5 6144 + 5435 6144 26591 242 0 2 5 3 1 11 1 2 446 chain 19203 chr6 170805979 + 102856961 102857177 L1PA3long 6157 + 5941 6157 57347 216 chain 428035 chr6 170805979 + 102871065 102877033 HERVL-int 5654 + 0 5654 4776 47 3 0 18 0 1 4 1 0 112 0 1 102 1 3 116 5 11 233 2 1 158 0 1 261 1 0 6 0 1 22 0 20 125 0 1 219 20 21 240 8 10 959 5 9 244 1 0 262 1 0 5 11 13 119 0 1 52 0 1 360 1 2 153 7 11 30 3 4 63 0 3 80 0 48 73 3 0 93 31 22 608 3 0 5 6 9 102 6 7 345 0 3 28 399 0 206 chain 31078 chr6 170805979 + 102958885 102959322 MLT2A2 560 + 0 457 41066 183 1 0 13 29 30 127 0 7 34 6 19 44 chain 385182 chr6 170805979 + 102973991 102979465 L1PB1 5432 + 51 5420 5395 38 5 3 59 0 11 112 0 1 136 1 0 190 4 1 25 13 16 113 0 1 187 38 42 59 0 1 82 0 1 249 115 0 10 5 17 129 5 9 58 2 1 139 4 10 308 3 0 128 18 0 80 7 4 5 0 3 171 0 5 40 2 0 56 3 2 288 2 1 170 1 2 416 1 4 287 0 5 51 0 1 285 1 6 363 1 0 170 18 19 6 3 0 368 3 2 106 1 2 9 3 0 24 1 0 9 15 10 12 2 13 35 9 8 12 2 1 42 1 0 14 2 1 5 1 0 14 8 0 13 28 23 20 1 0 21 1 0 13 1 0 16 chain 469503 chr6 170805979 + 103003641 103009016 L1PA5 6144 + 740 6132 3873 287 1 0 192 0 1 172 2 0 10 0 1 4 11 7 394 1 14 15 2 1 1223 0 4 230 0 1 354 2 1 425 0 1 216 0 1 151 0 3 1433 4 5 246 chain 72822 chr6 170805979 + 103092037 103093078 MER11A 1151 + 0 1151 23354 54 1 100 22 8 0 118 4 0 32 0 2 112 3 4 94 5 6 55 15 14 69 0 3 136 8 41 22 18 0 36 0 1 60 6 7 163 chain 36362 chr6 170805979 + 103160860 103161378 MLT2A2 560 + 0 560 37168 194 8 11 111 31 32 55 1 39 118 chain 89979 chr6 170805979 + 103203239 103204224 L1PA3long 6157 + 5172 6157 19689 985 chain 174684 chr6 170805979 + 103222910 103224913 L1PA4 6152 + 3508 5515 10859 1571 0 1 395 1 4 36 chain 16380 chr6 170805979 + 103235757 103235959 L1PA7 6471 + 6257 6461 60543 175 0 2 27 chain 12219 chr6 170805979 + 103239251 103239612 THE1B 368 + 0 368 66442 76 168 173 17 3 4 33 6 7 58 chain 440700 chr6 170805979 + 103248141 103253275 L1PA5 6144 + 0 6140 4564 89 0 996 51 0 2 582 0 1 585 1 0 870 1 0 332 0 1 421 0 1 58 0 3 885 1 0 94 1 0 245 10 11 31 8 8 152 0 1 466 1 0 107 1 2 135 0 4 7 chain 9639 chr6 170805979 + 103306637 103306946 L1PB1 5432 + 5108 5390 71182 6 5 0 24 1 0 8 1 0 10 2 0 3 2 0 10 11 9 27 16 19 13 4 3 39 5 4 13 18 0 8 45 49 20 1 0 17 chain 42797 chr6 170805979 + 103316543 103317092 L1PA7 6471 + 3616 4166 32890 234 0 2 136 4 3 175 chain 7753 chr6 170805979 + 103365848 103365965 L1MA4A 3247 + 3025 3138 75480 35 0 1 46 1 0 24 4 0 7 chain 18793 chr6 170805979 + 103370184 103370424 L1P3 4156 + 3902 4139 57788 200 16 13 24 chain 147481 chr6 170805979 + 103376143 103377847 L1PA4 6152 + 4359 6084 12515 140 0 1 552 0 1 12 0 1 309 1 2 264 0 14 352 1 4 73 chain 20508 chr6 170805979 + 103397877 103398246 THE1C 375 + 0 370 55776 109 90 92 149 1 0 20 chain 87105 chr6 170805979 + 103460468 103461481 L1PA5 6144 + 4758 5776 20215 287 0 1 246 1 2 190 1 4 288 chain 431469 chr6 170805979 + 103521569 103527725 L1PA6 6164 + 3 5842 4730 174 1 2 15 15 16 32 17 27 47 337 97 36 19 0 59 41 30 28 75 1 178 21 0 47 1 18 118 1 5 113 4 5 4 1 0 12 0 1 172 28 27 168 8 9 159 5 4 727 20 13 34 0 2 111 0 7 43 17 25 511 8 8 102 0 2 791 0 1 370 0 3 61 1 0 231 9 8 758 0 1 426 chain 146081 chr6 170805979 + 103528370 103530188 L1PA7 6471 + 4634 6467 12606 31 0 8 6 0 3 148 0 1 101 2 0 29 1 2 5 1 0 439 0 2 204 4 3 193 0 3 325 1 2 328 chain 74241 chr6 170805979 + 103557622 103558441 L1PA3long 6157 + 4276 5099 23020 81 0 4 738 chain 38731 chr6 170805979 + 103630727 103631157 L1PA2 6032 + 5602 6032 35540 430 chain 206773 chr6 170805979 + 103632799 103635735 L1PBa 3878 + 866 3793 9476 109 1 2 10 1 0 201 16 16 257 1 5 139 9 10 32 13 10 100 0 4 50 2 0 121 22 26 461 0 5 24 4 5 4 1 0 253 6 0 119 9 10 59 0 1 153 3 0 142 30 27 209 1 0 109 0 1 38 1 2 6 2 0 12 3 4 113 2 1 22 2 0 10 16 10 14 1 0 5 5 3 13 chain 174328 chr6 170805979 + 103645726 103647850 L1PA7 6471 + 3630 6465 10880 664 14 708 621 0 4 509 13 14 92 0 6 65 1 0 6 0 2 5 4 5 124 0 4 6 chain 88998 chr6 170805979 + 103655288 103656251 L1PA2 6032 + 4394 5357 19856 963 chain 557256 chr6 170805979 + 103709031 103715056 L1PA2 6032 + 3 6032 287 439 0 1 168 0 2 1543 0 1 3875 chain 4897 chr6 170805979 + 103784287 103784407 MER5A 189 + 46 165 86168 54 11 4 10 27 33 18 chain 110091 chr6 170805979 + 103793680 103795075 L1PA8A 6298 + 4885 6290 17068 1220 9 26 14 15 16 17 2 9 8 14 0 44 1 0 51 chain 512499 chr6 170805979 + 103801850 103807999 L1PA5 6144 + 9 6141 2644 325 5 6 175 3 1 436 25 0 12 0 6 178 9 8 13 9 0 490 0 1 490 0 9 154 10 8 473 0 1 303 0 5 50 5 6 556 5 6 196 0 2 1514 3 1 694 3 0 13 chain 4638 chr6 170805979 + 103822407 103822563 L1MA3 4352 + 33 218 87602 4 1 0 44 71 33 8 0 7 19 0 61 9 chain 90949 chr6 170805979 + 103832722 103834272 L1PA8 5853 + 4376 5853 19515 329 323 0 213 3 0 6 0 1 23 19 278 335 2 1 46 2 0 71 11 9 52 2 1 24 6 5 83 chain 4659 chr6 170805979 + 103875265 103875426 LTR48 738 + 90 254 87481 14 67 69 16 16 17 48 chain 2847 chr6 170805979 + 103926942 103926972 L1PA5 6144 + 5381 5411 101256 30 chain 65842 chr6 170805979 + 103926972 103927701 L1PA5 6144 + 5412 6141 24990 729 chain 29612 chr6 170805979 + 103938550 103939245 MER75 514 + 58 470 42467 181 0 2 95 1 19 25 304 0 73 0 1 16 chain 68147 chr6 170805979 + 104001941 104002692 L1PA5 6144 + 4495 5245 24419 711 1 0 39 chain 78699 chr6 170805979 + 104002714 104003596 L1PA5 6144 + 5250 6135 21940 307 0 1 117 0 2 458 chain 164436 chr6 170805979 + 104055957 104057970 L1PA7 6471 + 4445 6467 11461 405 0 4 321 4 5 216 0 6 205 7 10 587 1 3 18 0 1 80 14 10 64 3 2 72 3 0 13 chain 61219 chr6 170805979 + 104062537 104063215 L1PA3long 6157 + 5479 6157 26059 678 chain 12926 chr6 170805979 + 104076235 104076413 L1MA3 4352 + 3889 4062 65211 147 5 0 26 chain 33582 chr6 170805979 + 104079206 104079672 MLT2A1 477 + 0 477 39018 117 33 25 27 2 6 237 2 18 28 1 0 19 chain 435974 chr6 170805979 + 104079672 104085119 HERVL-int 5654 + 0 5654 4644 600 1 0 81 9 28 157 0 5 54 0 1 16 7 9 171 1 2 349 12 13 180 8 4 184 0 11 72 0 1 175 2 3 350 0 1 68 0 1 18 0 3 1025 1 2 95 1 2 164 22 177 96 0 1 82 3 0 171 0 5 583 0 1 264 11 4 49 0 3 295 0 9 21 1 0 48 chain 308615 chr6 170805979 + 104088130 104091587 L1PA4 6152 + 2696 6152 6647 517 0 1 2145 0 1 205 0 1 580 4 0 6 chain 131749 chr6 170805979 + 104092356 104093823 L1PA3long 6157 + 4682 6157 13851 477 0 5 201 0 1 640 1 3 148 chain 55806 chr6 170805979 + 104104785 104105440 L1PA7 6471 + 5456 6119 27626 165 0 3 169 0 4 174 0 1 147 chain 25979 chr6 170805979 + 104105452 104105787 L1PA7 6471 + 6132 6467 47750 166 10 11 6 0 1 145 2 0 6 chain 4159 chr6 170805979 + 104165529 104165580 L1M1 2793 + 1984 2039 90393 26 0 4 25 chain 72586 chr6 170805979 + 104189757 104190581 L1PA5 6144 + 5049 5879 23408 808 1 7 15 chain 25174 chr6 170805979 + 104219178 104219464 L1PA6 6164 + 5870 6156 48999 286 chain 78214 chr6 170805979 + 104275970 104277144 L1PA11 4918 + 3482 4629 22047 150 0 2 36 3 4 14 0 1 165 0 2 16 7 6 37 2 3 395 0 4 13 1 2 35 1 0 26 2 1 13 3 0 65 2 0 17 1 0 19 4 0 8 36 27 11 1 0 13 44 32 7 2 0 5 2 0 18 chain 8088 chr6 170805979 + 104306996 104307128 MER85 139 + 0 139 74663 75 28 35 29 chain 95685 chr6 170805979 + 104345926 104347494 HSMAR1 1287 + 5 1287 18813 117 0 5 174 1 5 108 3 5 138 2 0 467 0 1 50 0 1 81 305 7 8 2 0 5 0 2 50 0 1 57 chain 4129 chr6 170805979 + 104352551 104352606 MADE1 96 - 0 96 90590 12 0 41 43 chain 27956 chr6 170805979 + 104361309 104361605 AluYa5 310 + 0 297 44935 131 0 1 165 chain 490786 chr6 170805979 + 104374607 104380123 L1PA4 6152 + 0 5518 3400 2212 1 0 65 1 0 61 0 1 570 0 1 537 7 2 735 0 3 167 0 4 340 0 1 673 1 0 146 chain 6214 chr6 170805979 + 104431799 104431877 MER57B2 428 + 350 428 80304 78 chain 24604 chr6 170805979 + 104444045 104444324 L1PA7 6471 + 6190 6469 49861 279 chain 98546 chr6 170805979 + 104446156 104447635 LTR12C 1709 + 0 1709 18475 30 0 2 224 6 7 11 11 20 8 7 0 36 14 57 48 0 1 20 0 3 4 1 0 71 0 1 57 15 16 103 0 118 25 30 0 22 1 131 97 1 0 5 3 1 90 52 20 54 5 1 171 2 1 172 1 0 82 chain 466675 chr6 170805979 + 104452416 104457460 L1PA2 6032 + 987 6025 3940 305 5 0 532 1 0 4201 chain 2942 chr6 170805979 + 104467614 104467661 MER3 215 + 134 193 100485 26 3 15 18 chain 562761 chr6 170805979 + 104489393 104495424 L1PA2 6032 + 1 6032 132 6031 chain 5328 chr6 170805979 + 104508200 104508281 MADE1 96 + 0 96 84060 46 4 19 31 chain 20631 chr6 170805979 + 104546600 104546846 L1PA3long 6157 + 5911 6157 55591 91 1 8 9 7 0 138 chain 18602 chr6 170805979 + 104561392 104561619 L1PA7 6471 + 6241 6470 57993 66 7 11 111 2 0 41 chain 58294 chr6 170805979 + 104657849 104658598 L1PA10 4194 + 884 1636 26867 209 7 10 533 chain 250311 chr6 170805979 + 104665360 104669373 L1PA11 4918 + 1208 4508 8225 140 0 1 73 0 3 388 3 5 15 0 2 164 11 13 484 4 5 10 0 1 123 1 4 7 3 0 74 2 0 26 1 0 583 20 0 91 0 9 146 2 1 90 1 0 14 681 0 545 5 8 21 21 1 76 10 5 53 9 8 10 2 0 68 2 0 12 2 1 20 chain 32984 chr6 170805979 + 104667841 104668325 MLT2A2 560 + 0 506 39527 168 51 50 66 0 1 28 0 11 77 1 12 93 chain 530740 chr6 170805979 + 104670787 104677213 L1PA7 6471 + 3 6469 1800 383 15 19 69 0 1 593 25 37 256 0 2 1395 0 4 850 1 0 326 0 1 65 15 14 257 0 4 48 0 1 279 0 2 209 0 4 368 2 1 61 0 1 101 3 0 6 0 2 5 6 17 237 1 0 838 2 0 10 chain 4159 chr6 170805979 + 104719385 104719432 L1MA10 1535 + 1256 1303 90401 47 chain 545538 chr6 170805979 + 104737315 104743324 L1PA2 6032 + 0 6031 998 71 1 2 184 1 0 107 0 1 321 0 3 8 0 7 1148 0 2 1273 0 8 683 0 1 2212 chain 477600 chr6 170805979 + 104756577 104762708 L1PA7 6471 + 5 6466 3685 196 11 10 118 18 188 11 6 33 160 5 15 33 25 100 135 0 27 15 0 21 246 0 1 445 1 0 240 3 2 519 0 2 119 3 0 211 0 3 645 1 0 98 8 10 240 1 2 242 0 1 63 3 4 51 0 2 147 13 11 423 2 1 312 0 1 513 1 0 644 1 0 41 4 5 148 3 0 7 chain 29754 chr6 170805979 + 104792610 104792987 LTR3B_ 500 + 0 377 42300 299 8 4 39 0 4 31 chain 506086 chr6 170805979 + 104799760 104805857 L1PA6 6164 + 0 6156 2927 150 1 20 67 0 2 148 18 14 166 1 0 156 1 2 62 0 17 122 0 6 257 0 1 262 1 0 57 0 1 245 1 2 233 3 0 25 0 9 89 0 3 78 0 2 121 18 8 466 0 3 254 0 1 140 0 1 227 1 23 150 22 0 588 2 3 617 0 4 85 0 3 424 0 1 18 1 2 56 0 2 233 0 1 379 6 5 133 1 0 12 chain 3439 chr6 170805979 + 104845107 104845147 MADE1 96 + 2 42 95739 40 chain 155736 chr6 170805979 + 104872812 104875270 L1PA5 6144 + 3677 6140 12021 439 12 0 298 6 18 13 0 3 849 0 4 493 2 0 346 chain 6937 chr6 170805979 + 104914806 104914891 L1MA3 4352 + 2727 2811 77819 46 1 0 38 chain 22225 chr6 170805979 + 105088263 105088612 THE1B 368 + 0 357 53514 162 8 7 26 3 0 6 30 43 72 1 0 41 chain 27315 chr6 170805979 + 105192405 105192747 MER75 514 + 154 514 45806 173 2 20 167 chain 59111 chr6 170805979 + 105196719 105197926 Tigger1 2417 + 528 1476 26634 213 5 6 56 332 0 217 0 15 31 0 13 25 15 44 144 1 0 6 25 26 34 22 25 16 10 22 55 chain 347725 chr6 170805979 + 105236682 105241681 L1PB1 5432 + 703 5392 5938 59 0 3 333 0 3 96 9 19 29 1 5 141 29 9 10 7 8 89 291 0 91 0 5 309 0 2 233 6 5 22 3 4 145 0 1 157 10 0 18 0 1 13 0 9 222 0 1 66 8 7 7 0 1 15 2 1 359 5 9 118 0 4 247 1 2 145 13 0 6 4 0 78 0 3 55 0 3 446 0 2 208 0 4 8 0 4 74 0 8 12 0 1 177 3 0 77 0 1 4 1 0 128 2 1 75 13 4 12 3 0 21 1 0 9 16 11 10 2 0 52 2 1 16 1 0 44 1 0 14 1 0 4 63 47 24 1 0 22 chain 553634 chr6 170805979 + 105244374 105250517 L1PA3long 6157 + 0 6157 508 2833 0 1 432 0 4 244 0 1 173 0 4 1615 1 5 845 chain 12832 chr6 170805979 + 105261853 105261995 L1PA2 6032 + 5884 6027 65391 6 0 1 136 chain 28710 chr6 170805979 + 105291342 105291719 MLT2A1 477 + 0 384 43782 140 0 1 22 6 10 187 1 3 21 chain 485165 chr6 170805979 + 105338423 105344827 L1PA5 6144 + 0 6132 3530 96 0 1 24 0 14 390 1 5 277 17 0 11 17 34 83 0 4 230 9 0 323 17 13 627 0 1 181 2 4 372 4 7 473 1 0 316 0 4 12 0 1 380 0 2 456 0 4 100 0 3 823 1 5 18 1 4 214 608 299 183 0 1 137 chain 23752 chr6 170805979 + 105367429 105367694 AluYa5 310 + 38 304 51193 93 3 4 169 chain 5899 chr6 170805979 + 105382037 105382231 L1MA8 2339 + 2015 2198 81489 51 108 97 35 chain 506069 chr6 170805979 + 105415015 105421152 L1PA5 6144 + 1 6144 2928 60 1 4 55 0 14 76 2 1 741 25 0 156 17 18 36 16 7 50 0 2 1083 1 5 5 3 0 20 1 2 840 1 0 815 1 14 388 0 1 472 0 6 1115 7 0 6 1 8 143 chain 46677 chr6 170805979 + 105538706 105539303 L1PA8 5853 + 5263 5853 30781 299 1 0 42 6 4 69 3 2 9 1 0 52 2 1 19 2 1 92 chain 4387 chr6 170805979 + 105661743 105661796 MER21A 919 + 507 560 88962 53 chain 99060 chr6 170805979 + 105673373 105674718 L1PB1 5432 + 3738 5095 18408 74 8 12 462 5 7 310 0 3 21 12 10 37 0 1 23 2 6 93 37 37 261 chain 28628 chr6 170805979 + 105675254 105675565 AluYa5 310 + 0 310 43903 132 1 0 178 chain 28605 chr6 170805979 + 105682227 105682528 AluYk12 309 + 8 309 43945 301 chain 114538 chr6 170805979 + 105686289 105687856 THE1C-int 1605 + 18 1605 16469 77 0 57 18 3 0 275 85 11 824 9 41 84 7 14 53 0 1 132 chain 17449 chr6 170805979 + 105702750 105703028 THE1B 368 + 0 303 59296 44 0 15 116 1 0 23 42 53 52 chain 557973 chr6 170805979 + 105716128 105722275 L1PA3long 6157 + 4 6155 246 1022 1 0 163 0 3 729 1 0 3625 4 7 602 chain 30491 chr6 170805979 + 105725835 105726220 L1PA7 6471 + 6088 6470 41582 12 5 0 306 0 1 49 1 2 12 chain 26120 chr6 170805979 + 105762771 105763077 L1PA7 6471 + 6165 6468 47536 296 3 0 7 chain 182709 chr6 170805979 + 105826294 105828432 L1PA7 6471 + 4332 6470 10455 994 4 0 227 10 12 49 0 3 92 1 2 290 1 0 318 1 0 151 chain 44909 chr6 170805979 + 105842058 105842546 L1PA4 6152 + 5663 6151 31633 488 chain 35178 chr6 170805979 + 105860887 105861299 L1PA7 6471 + 5908 6320 37907 412 chain 12068 chr6 170805979 + 105861302 105861450 L1PA7 6471 + 6324 6469 66720 135 3 0 10 chain 18504 chr6 170805979 + 105904372 105904620 7SK 245 + 0 240 58097 79 1 2 119 10 1 39 chain 50704 chr6 170805979 + 105947650 105948213 L1PA3long 6157 + 5594 6157 29313 563 chain 9357 chr6 170805979 + 105983085 105983226 MLT1B 390 + 204 344 71793 16 14 13 111 chain 22800 chr6 170805979 + 106008090 106008384 AluSc 308 + 0 292 52660 132 2 0 41 11 11 108 chain 30235 chr6 170805979 + 106152142 106152505 THE1B-int 1605 + 1236 1600 41819 112 0 1 71 1 0 62 0 1 117 chain 26107 chr6 170805979 + 106203928 106204239 L1PA7 6471 + 6161 6470 47559 304 2 0 5 chain 18441 chr6 170805979 + 106208744 106209439 L1MD2 1676 + 774 1446 58181 24 74 58 74 18 16 61 32 31 13 75 73 13 1 0 25 176 175 76 7 8 20 1 0 5 chain 41633 chr6 170805979 + 106228136 106228639 LTR17 781 + 255 781 33606 72 0 1 382 1 23 48 chain 289167 chr6 170805979 + 106230386 106233738 HERV17-int 4347 + 12 3395 7156 15 1 0 52 1 0 36 8 7 17 1 0 227 8 10 375 0 3 53 1 5 463 2 0 193 0 1 609 0 4 180 0 3 424 2 0 170 0 14 274 1 0 32 0 5 138 0 4 69 chain 28390 chr6 170805979 + 106235484 106235814 LTR17 781 + 0 326 44283 292 4 0 34 chain 34270 chr6 170805979 + 106259827 106260268 L1PA6 6164 + 5719 6160 38513 27 0 4 81 0 1 119 7 8 64 1 0 130 5 0 7 chain 452266 chr6 170805979 + 106263172 106269045 L1PA8 5853 + 51 5853 4328 21 2 0 10 1 0 13 49 13 190 22 10 46 0 3 240 0 18 14 4 5 93 0 2 6 15 6 42 0 3 418 8 12 315 2 0 204 1 0 22 0 3 258 11 0 393 4 2 154 1 10 253 0 1 49 7 2 47 0 4 209 0 1 77 0 1 58 3 0 50 20 0 16 0 17 500 0 1 25 0 8 261 0 3 28 0 2 143 2 1 269 0 1 100 2 1 153 43 0 152 0 2 70 0 2 191 0 2 250 50 49 34 2 0 41 1 0 27 4 1 11 1 0 46 7 6 18 1 0 93 chain 3590 chr6 170805979 + 106282319 106282490 Tigger9b 617 + 387 550 94516 32 13 13 14 49 58 17 33 16 13 chain 41307 chr6 170805979 + 106328264 106328735 MER9a2 513 + 0 513 33783 398 0 42 73 chain 29230 chr6 170805979 + 106362963 106363267 AluYg6 310 + 0 304 43004 304 chain 4290 chr6 170805979 + 106372557 106372604 MADE1 96 + 49 96 89565 47 chain 537716 chr6 170805979 + 106404584 106411023 L1PA7 6471 + 0 6468 1469 1185 1 0 8 5 16 426 0 1 117 2 1 120 8 0 418 0 3 105 2 3 88 1 0 453 0 9 172 1 5 28 1 0 4 1 2 459 0 1 211 15 16 146 0 3 138 3 0 440 6 5 48 0 2 346 1 0 403 0 1 231 0 3 85 4 0 360 0 1 51 0 1 12 0 11 87 0 1 48 2 4 41 1 0 85 3 0 57 3 0 7 chain 8702 chr6 170805979 + 106420705 106420805 HY3 101 + 0 100 73207 100 chain 9161 chr6 170805979 + 106454828 106454927 HY3 101 + 1 100 72205 99 chain 13173 chr6 170805979 + 106605936 106606133 L1MA5 2750 + 925 1128 64823 130 0 2 10 1 0 16 18 23 22 chain 5908 chr6 170805979 + 106607726 106607815 U6 107 + 11 103 81451 25 7 10 57 chain 37973 chr6 170805979 + 106612549 106613041 LTR10F 562 + 0 554 36090 81 0 5 77 0 1 38 0 52 12 5 11 198 2 0 79 chain 8821 chr6 170805979 + 106619910 106620482 Tigger2a 444 + 207 375 72946 23 1 6 21 49 0 27 382 22 69 chain 28016 chr6 170805979 + 106676657 106676963 AluYb8 318 + 0 304 44842 132 2 0 172 chain 31285 chr6 170805979 + 106725462 106725800 L1PA2 6032 + 5676 6014 40906 338 chain 117036 chr6 170805979 + 106779904 106781471 THE1B-int 1605 + 0 1598 16049 68 40 39 76 0 3 10 5 6 205 19 44 290 4 5 407 0 1 248 1 2 194 chain 27116 chr6 170805979 + 106781478 106781831 THE1B 368 + 0 368 46100 44 0 15 110 1 0 9 0 1 5 1 0 86 0 1 97 chain 112484 chr6 170805979 + 106805583 106806954 LTR12C 1709 + 0 1709 16754 286 4 13 137 0 1 24 4 0 6 9 12 355 0 325 65 0 4 481 chain 5959 chr6 170805979 + 106807629 106807759 LTR35A 463 + 0 97 81234 15 4 0 45 1 0 21 31 3 13 chain 154032 chr6 170805979 + 106812077 106814104 L1PA13 3608 + 1355 3385 12109 265 2 1 277 7 0 6 16 17 6 0 6 28 0 4 653 2 1 378 0 4 36 1 0 36 4 1 12 5 7 30 6 5 31 1 0 23 0 3 88 3 1 60 1 0 18 0 1 32 chain 11650 chr6 170805979 + 106862205 106862390 THE1B 368 + 173 368 67482 25 14 16 14 7 15 125 chain 20656 chr6 170805979 + 106863597 106863885 THE1B 368 + 70 368 55557 102 2 1 23 3 0 5 0 1 12 0 4 10 7 15 59 0 1 65 chain 26040 chr6 170805979 + 106894145 106894500 L1PA8 5853 + 5503 5853 47669 61 1 0 44 2 0 10 0 1 12 0 1 46 2 1 11 1 0 50 2 1 19 1 0 93 chain 39420 chr6 170805979 + 106924726 106925186 LTR2 463 + 0 463 35061 127 0 3 333 chain 59427 chr6 170805979 + 107001500 107003574 PABL_A-int 1935 + 106 1284 26526 27 9 6 27 286 5 71 344 42 19 0 3 21 9 0 12 1 0 23 67 55 44 0 3 58 14 4 41 5 6 23 2 0 197 4 3 38 0 3 34 59 58 70 326 18 56 1 0 35 49 69 58 0 5 44 chain 54730 chr6 170805979 + 107012098 107012858 HSMAR1 1287 + 325 1088 27963 359 15 13 166 6 8 26 4 1 11 21 27 152 chain 4393 chr6 170805979 + 107052272 107052326 MER58D 378 + 324 378 88927 54 chain 65939 chr6 170805979 + 107084335 107085328 LTR12 884 + 0 869 24971 123 115 0 15 18 2 138 25 0 41 0 25 32 2 0 28 3 8 324 6 10 123 chain 1944 chr6 170805979 + 107084458 107084523 LTR12 884 + 255 336 75207 40 6 22 19 chain 3824 chr6 170805979 + 107100169 107100217 MER33 330 + 147 193 92680 8 2 0 38 chain 25001 chr6 170805979 + 107104009 107104308 AluY 311 + 0 301 49274 42 0 7 69 3 0 15 2 0 168 chain 2998 chr6 170805979 + 107122136 107122169 MLT1B 390 + 27 60 99850 33 chain 3299 chr6 170805979 + 107144529 107144567 MER57B1 401 + 294 332 97023 38 chain 24249 chr6 170805979 + 107300417 107300743 LTR17 781 + 0 324 50419 59 1 0 97 1 0 26 1 0 69 6 7 66 chain 28166 chr6 170805979 + 107306182 107306537 THE1B 368 + 0 368 44608 31 0 1 8 0 15 113 1 0 4 2 1 123 1 0 72 chain 110242 chr6 170805979 + 107376833 107378046 L1PA3long 6157 + 4941 6157 17045 461 0 3 752 chain 37336 chr6 170805979 + 107425215 107425694 THE1B-int 1605 + 0 528 36525 91 0 2 197 0 22 118 0 25 73 chain 24729 chr6 170805979 + 107429606 107429901 AluSp 311 + 4 299 49679 295 chain 5946 chr6 170805979 + 107481336 107481404 MER41A 554 + 399 467 81293 68 chain 19269 chr6 170805979 + 107482851 107483062 L1PA3long 6157 + 5945 6157 57271 192 0 1 19 chain 8953 chr6 170805979 + 107507614 107507726 MER30 238 + 131 238 72665 52 5 0 55 chain 47178 chr6 170805979 + 107702781 107703331 MER41A 554 + 0 554 30580 155 0 1 202 0 3 193 chain 13089 chr6 170805979 + 107724906 107725194 L1MA4 2864 + 2560 2809 64948 115 3 0 18 59 31 12 23 17 12 6 4 40 chain 19001 chr6 170805979 + 107764692 107765054 THE1B 368 + 0 368 57554 108 8 9 52 70 76 61 24 23 39 chain 121367 chr6 170805979 + 107802709 107804064 SVA_D 2077 + 0 2077 15285 436 0 1 81 0 233 167 0 488 671 chain 2916 chr6 170805979 + 107812918 107812950 MLT2B4 540 + 506 538 100709 32 chain 17736 chr6 170805979 + 107829516 107829752 L1PA8 5853 + 5618 5853 58966 41 0 3 17 1 0 10 1 0 51 2 1 19 2 1 92 chain 62446 chr6 170805979 + 107887062 107887759 L1PA2 6032 + 5333 6029 25763 533 5 0 7 0 5 140 1 0 11 chain 44079 chr6 170805979 + 107916928 107917440 MER9a1 513 + 0 512 32099 18 1 0 124 0 1 369 chain 9336 chr6 170805979 + 107918720 107918850 Tigger1 2417 + 1466 1594 71842 28 9 7 93 chain 25289 chr6 170805979 + 107920152 107920450 AluYk4 311 + 11 306 48801 120 3 0 175 chain 2806 chr6 170805979 + 107923031 107923063 LTR23 429 + 315 347 101618 32 chain 169041 chr6 170805979 + 107933704 107935786 SVA_D 2077 + 13 2059 11153 12 5 10 509 40 0 161 2 9 204 0 36 38 0 51 43 1 0 93 145 0 173 0 49 70 0 1 414 0 1 172 chain 455 chr6 170805979 + 107934826 107934957 SVA_D 2077 + 966 1052 24263 73 45 0 13 chain 3618 chr6 170805979 + 107934899 107934944 SVA_D 2077 + 1346 1392 59021 42 0 1 3 chain 5764 chr6 170805979 + 107949508 107949623 L1M4c 1769 + 1560 1679 82067 31 1 0 16 0 4 17 22 23 28 chain 3795 chr6 170805979 + 107953388 107954480 SVA_D 2077 + 1207 2076 24263 131 223 0 50 0 1 6 1 0 681 chain 8446 chr6 170805979 + 107953521 107953664 SVA_D 2077 + 1038 1181 49114 143 chain 2896 chr6 170805979 + 107953664 107953694 SVA_D 2077 + 1308 1338 66356 30 chain 1214 chr6 170805979 + 107953712 107953742 SVA_D 2077 + 1406 1436 69002 30 chain 29427 chr6 170805979 + 107990628 107990968 LTR14A 344 + 0 344 42698 262 0 4 78 chain 41935 chr6 170805979 + 107991069 107991580 HERV1_LTRa 508 + 0 508 33406 42 1 0 33 5 0 8 0 7 381 4 0 37 chain 23673 chr6 170805979 + 108006098 108006744 MER41C 542 + 0 321 51323 49 0 1 42 0 4 135 336 6 84 chain 3005 chr6 170805979 + 108026504 108026552 MLT1K 546 + 481 522 99797 23 7 0 18 chain 27926 chr6 170805979 + 108052690 108053146 MER65D 500 + 0 494 44991 32 1 0 24 16 55 22 2 0 28 1 0 31 0 1 89 1 5 46 14 10 61 1 5 27 1 0 53 1 0 5 chain 9032 chr6 170805979 + 108060826 108060928 HY1 111 + 9 111 72492 102 chain 3715 chr6 170805979 + 108096016 108096061 L1MC3 1789 + 665 710 93499 45 chain 5803 chr6 170805979 + 108099343 108099847 L1MC3 1789 + 1244 1438 81902 67 3 0 6 344 37 15 41 42 4 1 0 23 chain 8330 chr6 170805979 + 108139244 108139799 L1MB7 1623 + 1128 1594 74083 27 0 1 29 2 0 12 5 0 11 61 40 17 9 5 15 1 0 6 115 105 22 145 0 11 33 131 34 chain 21766 chr6 170805979 + 108205509 108205845 Tigger2 2703 + 2286 2648 54146 43 0 1 7 1 2 39 6 0 27 0 3 93 0 5 12 0 5 44 11 19 10 8 10 10 0 7 25 chain 3341 chr6 170805979 + 108219893 108219931 Tigger3b 1229 + 63 101 96679 38 chain 4127 chr6 170805979 + 108252431 108252478 5S 121 + 33 80 90603 47 chain 107973 chr6 170805979 + 108269239 108270934 SVA_A 1864 + 21 1847 17331 26 5 0 46 0 11 78 2 0 319 0 40 35 14 13 11 26 23 61 3 0 35 4 1 43 1 0 35 50 182 18 0 1 4 27 14 78 53 0 43 0 36 27 4 0 18 0 1 4 51 38 53 9 6 24 0 16 123 3 1 362 chain 5847 chr6 170805979 + 108274331 108274408 LTR23 429 + 219 295 81704 54 1 0 22 chain 7219 chr6 170805979 + 108292765 108292855 U6 107 + 0 93 76885 47 0 3 43 chain 4318 chr6 170805979 + 108336974 108337029 MER53 195 + 0 55 89377 55 chain 41469 chr6 170805979 + 108385193 108385700 MER9a3 513 + 2 513 33696 11 0 1 28 0 1 68 0 1 67 0 1 78 1 0 176 1 2 77 chain 492744 chr6 170805979 + 108410815 108416562 L1PA5 6144 + 5 5772 3352 130 17 43 145 0 3 353 0 1 22 0 4 464 10 0 1143 2 1 563 1 0 287 2 0 12 1 0 505 0 1 359 0 1 454 1 0 87 0 1 94 1 2 349 0 1 118 1 0 302 2 0 322 chain 418211 chr6 170805979 + 108513130 108517862 L1PA4 6152 + 3 5349 4908 1119 0 614 61 0 2 911 0 1 66 2 0 107 1 0 2465 chain 36625 chr6 170805979 + 108842185 108843087 MLT2A1 477 + 0 465 37001 169 4 1 8 1 2 205 4 0 14 429 0 14 2 0 52 chain 10812 chr6 170805979 + 108849410 108849537 L1PA6 6164 + 6035 6162 68830 127 chain 29238 chr6 170805979 + 108889906 108890218 AluYa5 310 + 0 310 42985 132 2 0 178 chain 170393 chr6 170805979 + 109046100 109048115 SVA_D 2077 + 16 2077 11090 36 0 25 128 0 11 672 25 67 5 0 1 32 0 50 49 0 1 90 49 0 201 1 0 4 24 0 13 4 0 665 6 0 11 chain 1915 chr6 170805979 + 109046936 109046961 SVA_D 2077 + 848 873 30194 25 chain 3753 chr6 170805979 + 109047137 109047186 SVA_D 2077 + 1005 1056 30194 31 0 2 18 chain 12668 chr6 170805979 + 109058297 109058470 Tigger3c 601 + 358 530 65686 47 9 8 117 chain 268012 chr6 170805979 + 109133556 109136575 L1PA5 6144 + 3123 6144 7762 41 1 0 79 0 3 2898 chain 30145 chr6 170805979 + 109142202 109142561 L1PA8A 6298 + 5921 6288 41891 256 0 4 6 0 4 97 chain 21005 chr6 170805979 + 109190500 109190841 THE1B 368 + 0 350 55111 137 0 4 10 1 2 16 1 0 21 54 59 101 chain 123870 chr6 170805979 + 109190874 109192467 THE1B-int 1605 + 15 1600 14870 415 37 20 258 40 49 198 4 5 218 1 0 422 chain 19017 chr6 170805979 + 109192472 109192774 THE1B 368 + 0 306 57535 15 15 14 140 1 0 21 7 10 9 1 5 25 2 1 66 chain 80272 chr6 170805979 + 109268125 109269174 MER11C 1089 + 0 1063 21576 246 0 9 62 0 4 65 1 0 146 45 44 15 10 8 70 0 1 20 0 4 5 1 0 38 0 1 127 0 1 54 1 0 143 chain 3453 chr6 170805979 + 109280169 109280207 L1ME1 1623 + 1232 1270 95610 38 chain 3339 chr6 170805979 + 109291359 109291398 MER50B 698 + 529 568 96700 39 chain 8346 chr6 170805979 + 109305494 109305594 HY3 101 + 1 101 74036 100 chain 13541 chr6 170805979 + 109321319 109321583 L1MC1 2226 + 1881 2122 64268 8 6 0 28 1 0 63 3 0 62 21 14 25 3 0 5 2 1 16 3 1 18 chain 83041 chr6 170805979 + 109364131 109365189 L1PA6 6164 + 5072 6162 21009 71 0 1 171 0 5 90 1 4 280 0 1 130 1 0 35 1 5 28 17 15 24 4 14 51 6 14 136 1 4 11 chain 85522 chr6 170805979 + 109412351 109413828 L1MA2 4263 + 2872 4114 20534 30 0 1 265 0 6 163 0 67 51 0 4 14 314 18 75 1 0 7 1 2 12 4 0 75 1 0 49 0 3 73 1 0 4 0 1 14 3 0 12 8 6 134 1 0 6 2 1 93 7 0 47 1 0 9 chain 42579 chr6 170805979 + 109424523 109425053 MER41A 554 + 0 534 33016 341 0 5 51 1 0 137 chain 44554 chr6 170805979 + 109477938 109478489 PABL_A 660 + 25 635 31802 11 0 1 44 0 9 144 1 45 36 0 5 315 chain 12257 chr6 170805979 + 109485618 109485782 Tigger3c 601 + 148 311 66362 16 7 6 141 chain 44224 chr6 170805979 + 109511982 109512527 MER41A 554 + 0 554 31996 53 0 1 373 0 8 119 chain 35623 chr6 170805979 + 109525275 109525944 L1PA15 4387 + 3633 4310 37648 62 6 7 111 2 0 10 2 0 5 1 0 44 0 3 13 2 0 45 1 0 15 1 0 5 80 81 13 1 12 45 1 0 22 0 4 55 1 0 22 10 12 37 17 14 40 chain 265868 chr6 170805979 + 109566762 109570166 L1PA5 6144 + 2813 5870 7802 784 352 3 4 0 1 1527 0 1 737 chain 27803 chr6 170805979 + 109567552 109567893 L1PA5 6144 + 3605 6144 45177 11 0 2198 330 chain 14845 chr6 170805979 + 109572974 109573212 MER45B 1037 + 761 993 62456 81 5 0 46 30 29 76 chain 228122 chr6 170805979 + 109593306 109596010 L1PA7 6471 + 3748 6467 8798 12 0 1 21 0 1 778 1 0 257 0 4 136 11 13 214 0 1 116 0 1 312 1 4 170 1 6 664 2 0 8 chain 3174 chr6 170805979 + 109611691 109611724 MLT1J 494 + 257 290 98153 33 chain 82365 chr6 170805979 + 109621015 109621905 L1PA2 6032 + 5142 6032 21162 890 chain 505069 chr6 170805979 + 109645090 109651236 L1PA4 6152 + 10 6146 2968 110 7 21 50 70 69 142 28 28 55 1 2 357 12 7 27 7 3 74 25 0 219 22 13 49 0 2 6 2 0 171 2 7 35 0 1 522 0 1 1190 2 1 1177 0 8 944 0 5 840 chain 99320 chr6 170805979 + 109651256 109652439 L1P1 4361 + 2819 4018 18373 12 0 1 4 1 0 335 1 0 179 1 17 549 0 3 5 3 0 7 1 2 85 chain 4994 chr6 170805979 + 109658835 109658895 MSTC 436 + 374 434 85686 60 chain 535951 chr6 170805979 + 109678659 109685740 L1PA7 6471 + 0 6469 1566 410 0 2 173 0 1 104 13 17 74 3 1 453 0 4 863 0 2 165 12 17 57 0 1 124 0 1 169 1 3 455 0 4 83 0 4 244 0 1 71 311 0 260 0 1 437 0 1 59 1 0 598 0 1 336 0 1 424 3 0 13 332 0 76 1 0 29 0 5 564 0 1 145 3 0 15 chain 16634 chr6 170805979 + 109745828 109746020 L1PA7 6471 + 4886 5078 60232 192 chain 19141 chr6 170805979 + 109746020 109746232 L1PA7 6471 + 5085 5297 57408 212 chain 52298 chr6 170805979 + 109757269 109757881 L1PA7 6471 + 4111 4731 28788 170 0 4 386 0 4 56 chain 112404 chr6 170805979 + 109757888 109759229 L1PA7 6471 + 4737 6093 16763 220 0 3 658 1 8 56 2 0 103 9 11 60 0 3 151 0 2 81 chain 9404 chr6 170805979 + 109759301 109759426 L1PA7 6471 + 6344 6468 71695 112 1 0 12 chain 22727 chr6 170805979 + 109829982 109830336 THE1B 368 + 0 368 52791 35 0 5 64 16 27 38 1 0 23 3 0 9 0 1 5 3 7 18 1 0 10 1 0 64 7 6 56 chain 28447 chr6 170805979 + 109830543 109830897 THE1A 353 + 0 353 44198 110 1 0 243 chain 131286 chr6 170805979 + 109830897 109832460 THE1A-int 1579 + 0 1579 13892 113 0 3 40 13 16 1006 0 10 391 chain 27192 chr6 170805979 + 109832460 109832817 THE1A 353 + 0 353 45978 111 1 0 80 0 3 39 14 8 112 chain 44450 chr6 170805979 + 109843356 109845230 L1PB1 5432 + 4685 5422 31856 69 742 0 51 0 1 122 0 3 65 7 2 100 381 16 24 3 2 4 1 0 14 8 4 6 2 0 12 0 1 39 2 1 16 1 0 45 1 0 14 1 0 4 61 46 24 1 0 21 1 0 13 1 0 18 chain 34081 chr6 170805979 + 109845288 109845666 L1PA5 6144 + 5766 6144 38642 378 chain 237264 chr6 170805979 + 109849276 109852093 HERVL-int 5654 + 2762 5654 8543 1152 0 4 347 4 70 1095 0 1 28 1 4 139 0 1 51 chain 33775 chr6 170805979 + 109852093 109852558 MLT2A1 477 + 0 477 38870 142 0 1 25 1 5 212 46 53 39 chain 42189 chr6 170805979 + 109877660 109878145 LTR15 485 + 0 485 33254 485 chain 106957 chr6 170805979 + 109878178 109882777 MER61-int 3695 + 1 1513 17441 29 4 0 16 1 0 120 1 2 104 1 0 138 1 2 100 0 1 24 1 8 40 8 7 50 3 1 399 766 0 80 0 5 51 2404 77 258 chain 5261 chr6 170805979 + 109895431 109895553 MER57-int 2662 + 2533 2643 84387 10 1 0 4 2 1 9 3 0 26 1 0 6 12 9 27 3 0 18 chain 25187 chr6 170805979 + 109938289 109938580 L1PA5 6144 + 5849 6143 48970 53 0 3 238 chain 43958 chr6 170805979 + 109957521 109958163 L1PA16 3655 + 2980 3618 32156 198 0 1 15 0 1 9 1 0 8 0 18 61 2 0 7 0 5 267 59 33 15 chain 22000 chr6 170805979 + 109965690 109966019 MER1B 344 + 0 344 53833 22 13 20 115 0 2 94 26 32 59 chain 173407 chr6 170805979 + 109988828 109990921 L1PA8A 6298 + 4190 6291 10934 484 2 0 814 0 3 85 1 0 4 0 1 602 1 8 100 chain 13726 chr6 170805979 + 109995564 109995909 L1PB1 5432 + 5108 5427 63982 30 1 0 9 1 0 10 6 2 8 2 0 53 2 1 10 6 5 38 81 70 26 2 1 20 1 0 13 1 0 18 2 0 5 chain 13369 chr6 170805979 + 110025916 110026155 L1PA16 3655 + 3403 3619 64516 12 5 6 157 9 6 8 2 0 4 14 0 7 5 0 16 chain 3308 chr6 170805979 + 110030765 110030805 MADE1 96 + 3 43 96934 40 chain 27823 chr6 170805979 + 110042834 110043225 MER51E 476 + 0 432 45153 17 0 1 4 1 0 110 1 36 121 4 13 102 1 0 11 2 0 17 chain 4426 chr6 170805979 + 110111614 110111666 L1MB8 1703 + 1465 1521 88756 25 0 4 27 chain 494255 chr6 170805979 + 110116061 110122186 L1PA6 6164 + 0 6156 3303 273 4 2 119 17 18 37 8 0 15 43 60 45 1 0 218 0 17 131 1 26 111 8 4 206 1 3 150 12 11 594 0 1 219 19 11 54 22 0 417 5 6 421 0 6 4 1 0 963 6 11 10 3 0 52 1 0 155 0 4 758 1 2 181 0 3 673 1 0 5 1 2 41 2 1 116 chain 26448 chr6 170805979 + 110123954 110124499 MER61D 487 + 0 487 47058 145 0 60 49 156 41 25 1 2 9 2 0 74 11 10 65 1 0 7 chain 18143 chr6 170805979 + 110172503 110172765 L1PB4 2604 + 2302 2568 58520 53 3 7 10 10 11 170 1 0 15 chain 466555 chr6 170805979 + 110259003 110264332 L1PA4 6152 + 23 5351 3943 776 0 1 954 1 0 434 1 0 139 0 1 96 0 1 1091 1 0 173 1 0 1662 chain 43255 chr6 170805979 + 110273395 110274010 L1PB2 3958 + 3246 3838 32608 62 2 0 55 1 0 11 8 0 65 2 0 12 4 0 94 1 0 72 1 0 64 8 7 68 3 1 18 8 7 56 chain 21963 chr6 170805979 + 110286662 110286996 MLT2A1 477 + 0 379 53893 27 9 24 99 0 5 14 4 1 9 0 1 41 25 52 106 chain 277568 chr6 170805979 + 110302890 110306309 L1PA7 6471 + 25 6463 7502 172 0 1 214 1 0 501 0 3 5 3 0 935 0 11 9 0 2 145 7 6 73 2 0 73 0 1 50 0 1 84 2 2988 322 1 0 79 0 2 367 0 1 129 0 19 245 chain 4429 chr6 170805979 + 110336293 110336412 MLT1I 406 + 294 400 88742 22 0 1 13 49 35 35 chain 22821 chr6 170805979 + 110377048 110377393 THE1B 368 + 14 367 52631 154 2 1 23 41 51 88 1 0 36 chain 491952 chr6 170805979 + 110378362 110384866 L1PA8A 6298 + 28 6291 3372 6 6 0 6 1 0 18 2 1 5 3 0 6 2 0 8 10 5 18 3 0 18 62 29 9 4 3 9 2 1 7 1 0 10 2 0 14 79 68 39 1 0 19 9 3 78 2 0 8 0 1 5 1 0 6 9 7 131 4 10 151 4 0 393 0 6 1092 1 0 292 1 0 850 1 0 4 0 2 6 11 6 21 209 0 14 0 4 30 1 2 71 0 7 326 0 1 16 1 2 203 8 14 330 1 0 211 0 1 400 0 4 42 0 1 411 2 1 80 0 2 8 2 6 569 0 17 119 chain 4358 chr6 170805979 + 110454489 110454554 MER41B 635 + 480 546 89122 20 8 9 37 chain 66631 chr6 170805979 + 110457456 110458465 LTR13 1007 + 0 1007 24789 42 0 2 14 0 1 14 27 21 227 79 80 229 1 0 56 2 1 12 1 0 7 1 5 101 5 6 143 0 2 6 2 0 6 3 1 31 chain 13045 chr6 170805979 + 110471132 110471334 Tigger3a 397 + 54 309 65035 21 31 84 150 chain 4303 chr6 170805979 + 110472964 110473077 MIR 256 + 12 128 89479 39 51 54 23 chain 41279 chr6 170805979 + 110488047 110488595 MER41A 554 + 0 554 33802 92 0 1 354 23 28 79 chain 3694 chr6 170805979 + 110490695 110490738 MER41-int 2638 + 112 155 93653 43 chain 44867 chr6 170805979 + 110499173 110499683 MER9a1 513 + 1 513 31656 449 1 3 60 chain 383516 chr6 170805979 + 110501029 110505558 HERVK9-int 4720 + 54 4720 5421 4 1 0 66 1 0 9 1 0 29 1 0 1453 2 0 1692 21 20 187 0 21 151 10 9 647 0 96 80 0 28 174 chain 43446 chr6 170805979 + 110505565 110506068 MER9a1 513 + 7 513 32479 161 0 3 342 chain 212449 chr6 170805979 + 110577736 110580370 L1PA10 4194 + 973 3642 9256 183 1 0 490 0 2 30 0 2 13 4 7 168 9 14 202 1 0 140 4 0 268 20 0 51 0 4 83 1 0 32 0 3 32 0 3 83 0 11 342 1 0 27 0 10 235 0 20 214 chain 52307 chr6 170805979 + 110584742 110585341 L1PA6 6164 + 5557 6156 28786 599 chain 7612 chr6 170805979 + 110599275 110599370 MSTD 398 + 0 99 75841 78 0 4 17 chain 78933 chr6 170805979 + 110600714 110601592 L1PA5 6144 + 5252 6130 21891 878 chain 24086 chr6 170805979 + 110694378 110694774 L1PB3 3668 + 79 475 50667 23 2 0 5 12 7 11 1 0 5 1 0 5 19 16 40 9 12 84 0 8 163 0 1 16 chain 21320 chr6 170805979 + 110705733 110706007 L1PA7 6471 + 6188 6470 54734 28 0 1 96 8 15 142 chain 3047 chr6 170805979 + 110723845 110723877 U2 167 + 0 32 99332 32 chain 3016 chr6 170805979 + 110731194 110731242 MER5A1 166 + 95 135 99691 15 8 0 25 chain 81053 chr6 170805979 + 110742099 110743147 MER11A 1151 + 0 1151 21423 77 0 8 77 0 1 56 0 2 8 1 0 65 0 11 21 0 2 204 0 13 137 23 27 37 0 4 69 0 1 14 1 59 101 0 1 90 1 0 66 chain 20558 chr6 170805979 + 110773122 110773359 AluSc 308 + 58 295 55698 237 chain 71964 chr6 170805979 + 110800240 110801181 L1PA17 2846 + 647 1594 23549 83 1 0 239 0 4 170 5 6 10 1 0 123 0 1 141 4 6 164 chain 116396 chr6 170805979 + 110821748 110824372 L1PB3 3668 + 636 3614 16156 19 0 3 16 7 0 204 1 4 25 189 69 218 6 25 15 0 1 36 0 9 120 1 0 4 33 5 48 0 1 142 301 7 342 0 12 16 0 1 93 0 1 16 332 1119 84 1 0 97 15 14 48 4 0 10 52 35 8 1 0 16 15 14 33 22 16 13 9 7 12 chain 36985 chr6 170805979 + 110841214 110841699 LTR10E 629 + 0 485 36744 164 0 2 105 6 5 15 9 8 48 1 0 5 0 1 132 chain 4868 chr6 170805979 + 110900879 110900937 MER41A 554 + 408 466 86333 58 chain 525357 chr6 170805979 + 110904342 110910749 L1PA5 6144 + 0 6143 2029 120 1 15 18 3 15 308 0 13 212 0 1 244 0 4 220 9 1 63 0 5 1152 0 1 1880 1 0 77 0 4 660 0 1 558 0 2 194 313 0 221 6 0 7 4 11 136 chain 37322 chr6 170805979 + 110916753 110917243 MER9a3 513 + 0 501 36535 18 0 2 87 6 7 142 1 0 38 2 1 26 0 7 92 0 2 11 0 1 67 chain 393969 chr6 170805979 + 110917881 110922603 HERVK9-int 4720 + 71 4720 5249 53 1 0 8 1 0 30 1 0 241 59 7 78 0 12 455 0 1 158 20 0 208 1 2 69 0 2 220 2 0 701 0 3 1220 1 0 5 0 1 664 14 1 337 18 16 157 chain 23355 chr6 170805979 + 110944055 110944351 AluSp 311 + 0 302 51849 70 4 10 222 chain 12167 chr6 170805979 + 110953244 110953397 MER41B 635 + 481 635 66533 27 0 1 126 chain 25308 chr6 170805979 + 110953487 110953814 MER41-int 2638 + 1366 2635 48773 122 0 942 205 chain 40425 chr6 170805979 + 110953824 110954675 MER41B 635 + 0 547 34364 128 1 2 313 0 1 4 25 20 46 301 0 33 chain 7288 chr6 170805979 + 110998662 110998779 MER50 708 + 30 140 76704 14 15 9 5 1 0 82 chain 4399 chr6 170805979 + 111057662 111057732 MER2B 336 + 245 314 88891 27 7 6 36 chain 18761 chr6 170805979 + 111095558 111095866 THE1B 368 + 0 306 57832 79 8 0 34 0 1 53 1 0 4 0 1 18 17 24 10 21 19 63 chain 17843 chr6 170805979 + 111108322 111108569 HSMAR2 1300 + 1019 1273 58835 154 0 1 14 4 6 55 2 6 18 chain 367566 chr6 170805979 + 111133098 111137433 HERV17-int 4347 + 12 4347 5701 15 6 5 45 2 1 35 2 0 25 3 2 519 1 0 92 0 3 714 2 0 117 0 1 319 1 10 895 15 2 127 18 0 993 16 27 176 0 2 80 0 12 103 0 1 14 chain 28910 chr6 170805979 + 111137746 111138073 LTR17 781 + 0 327 43469 327 chain 4816 chr6 170805979 + 111196661 111196731 U3 216 + 1 68 86616 26 7 0 28 0 4 9 chain 9897 chr6 170805979 + 111196757 111196883 MER2 342 + 153 279 70620 126 chain 113005 chr6 170805979 + 111234358 111236375 L1PB1 5432 + 3760 5424 16673 50 0 1 211 1 0 4 10 4 10 9 0 129 1 0 36 0 2 11 0 1 168 6 10 78 0 4 149 3 0 42 3 4 123 0 2 17 19 20 95 317 3 102 10 11 56 1 2 9 9 0 11 0 3 10 1 0 4 3 2 12 2 0 3 2 0 9 2 0 52 2 1 15 1 0 44 1 0 16 2 0 6 16 6 18 9 6 14 2 0 24 1 0 21 1 0 13 7 6 14 chain 12656 chr6 170805979 + 111258508 111258651 L1PA4 6152 + 6002 6152 65710 137 0 7 6 chain 13722 chr6 170805979 + 111315745 111315955 MER1B 344 + 120 344 63989 60 8 6 66 1 0 5 13 30 57 chain 11402 chr6 170805979 + 111440363 111440519 HSMAR1 1287 + 1114 1273 67909 43 7 10 106 chain 83865 chr6 170805979 + 111607686 111608674 LTR13 1007 + 8 1007 20834 211 0 1 84 1 0 125 3 12 23 0 2 495 0 2 8 2 0 36 chain 86334 chr6 170805979 + 111637343 111638302 L1PA5 6144 + 2724 3682 20360 452 1 0 506 chain 4180 chr6 170805979 + 111646166 111646215 MLT1A0 366 + 301 349 90261 37 1 0 11 chain 3722 chr6 170805979 + 111770187 111770282 MER33 330 + 105 213 93459 16 2 14 16 21 24 18 2 0 20 chain 135871 chr6 170805979 + 111821108 111822626 L1PA5 6144 + 4607 6130 13446 687 0 5 831 chain 6457 chr6 170805979 + 111947216 111947425 L1MB3 1562 + 1373 1552 79487 28 63 32 6 0 1 24 1 0 11 31 33 15 1 0 29 chain 3123 chr6 170805979 + 112024661 112024776 L2a 937 + 653 763 98611 5 1 0 27 63 59 19 chain 111206 chr6 170805979 + 112047110 112048370 SVA_D 2077 + 31 2077 16916 6 0 5 513 0 40 93 0 40 33 0 40 49 0 661 566 chain 18531 chr6 170805979 + 112052445 112052661 L1PA5 6144 + 5929 6144 58071 102 1 0 113 chain 69149 chr6 170805979 + 112105578 112106375 L1PA4 6152 + 5175 5968 24186 128 1 5 313 8 0 347 chain 71876 chr6 170805979 + 112200239 112201044 L1PA7 6471 + 5667 6470 23575 792 2 0 11 chain 4728 chr6 170805979 + 112269627 112269707 MADE1 96 - 0 96 87087 34 9 25 37 chain 31214 chr6 170805979 + 112303398 112303828 MER57A1 433 + 0 433 40962 245 0 1 30 0 1 10 1 0 13 28 30 103 chain 7357 chr6 170805979 + 112317616 112317717 MER57D 437 + 338 437 76508 5 2 0 94 chain 82879 chr6 170805979 + 112385293 112386315 L1PA10 4194 + 3094 4116 21048 240 5 6 742 1 0 34 chain 486987 chr6 170805979 + 112421101 112427550 L1PA7 6471 + 3 6458 3494 213 0 3 5 0 12 175 0 1 208 0 3 14 1 2 281 1 2 162 0 16 415 0 1 72 0 1 170 1 0 592 6 8 160 0 2 370 5 8 201 0 4 470 0 5 209 3 6 729 0 4 197 0 1 4 1 0 51 0 3 171 0 1 241 0 28 41 0 1 27 0 1 31 0 1 5 3 2 181 393 303 402 0 1 238 chain 35039 chr6 170805979 + 112426517 112426910 LTR10C 591 + 0 393 37993 393 chain 10537 chr6 170805979 + 112464658 112464793 MSTA 426 + 271 426 69344 25 1 21 109 chain 518213 chr6 170805979 + 112540952 112548140 L1PA7 6471 + 0 6470 2355 236 51 2 167 32 0 238 1 0 201 0 1 260 1 5 16 17 0 327 2 0 31 4 0 160 10 11 764 5 8 93 0 2 13 9 3 94 0 2 734 0 1 149 6 5 481 7 6 662 0 4 101 0 3 173 1 2 65 326 0 582 9 15 7 0 4 177 314 0 185 0 3 477 chain 108474 chr6 170805979 + 112552513 112553779 L1PA6 6164 + 2974 4242 17255 224 0 1 28 0 1 1014 chain 6008 chr6 170805979 + 112602484 112602594 L1MA3 4352 + 1020 1128 81044 41 21 20 29 1 0 18 chain 10671 chr6 170805979 + 112610547 112610675 THE1A 353 + 225 353 69099 128 chain 112544 chr6 170805979 + 112632714 112633970 L1PA3long 6157 + 4632 5893 16742 1110 0 4 77 0 1 69 chain 185535 chr6 170805979 + 112675174 112677428 L1PA6 6164 + 3892 6162 10319 673 0 1 83 1 0 168 0 2 108 1 0 152 4 11 225 5 1 270 0 12 564 chain 565636 chr6 170805979 + 112703745 112709778 L1HS 6032 + 0 6031 81 2950 0 5 1061 8 0 1679 0 1 335 chain 5456 chr6 170805979 + 112738544 112738609 MSTB 430 + 8 73 83421 65 chain 89996 chr6 170805979 + 112775859 112777051 L1PA8 5853 + 4250 5852 19685 331 16 1 245 0 1 182 2 0 56 0 1 143 1 429 40 1 0 8 15 14 19 0 1 19 2 1 19 1 0 92 chain 556904 chr6 170805979 + 112813021 112819047 L1PA2 6032 + 0 6028 303 715 0 1 2182 0 1 3129 chain 57995 chr6 170805979 + 112868991 112869802 L1PA2 6032 + 2052 2869 26969 145 0 2 58 6 5 242 0 1 153 1 5 206 chain 243926 chr6 170805979 + 112869808 112872953 L1PA2 6032 + 2875 6026 8381 167 10 10 31 1 0 285 8 11 355 7 7 80 12 6 134 1 0 4 0 1 113 0 2 304 5 4 114 8 6 380 1 8 165 11 11 28 1 0 4 0 1 70 0 4 846 chain 62789 chr6 170805979 + 112872961 112873766 L1PA8 5853 + 5053 5853 25684 41 1 0 425 0 3 42 1 0 44 2 0 70 2 1 21 2 1 39 2 1 22 1 0 90 chain 23457 chr6 170805979 + 112885812 112886099 L1PA6 6164 + 5875 6162 51656 287 chain 97304 chr6 170805979 + 112908683 112909788 L1PA5 6144 + 4967 6074 18620 326 1 5 558 1 0 138 4 3 77 chain 85360 chr6 170805979 + 112955285 112956264 L1PA5 6144 + 5175 6144 20554 208 1 0 508 1 0 245 8 0 8 chain 195790 chr6 170805979 + 112958239 112960625 L1PA7 6471 + 4018 6438 9849 756 0 3 86 4 22 100 5 6 60 0 1 232 0 1 117 0 2 220 6 5 69 0 2 192 0 2 209 1 7 63 10 9 256 chain 21535 chr6 170805979 + 112972026 112972384 L1PA15 4387 + 3656 4006 54456 26 9 0 18 5 7 106 21 23 54 2 0 16 2 0 6 1 3 18 1 0 73 chain 20573 chr6 170805979 + 112976829 112977145 THE1B 368 + 14 368 55678 30 0 15 109 1 0 5 2 1 23 2 0 64 0 19 19 23 31 38 chain 9585 chr6 170805979 + 113001824 113002065 MER33 330 + 27 266 71291 33 99 98 96 2 1 11 chain 24290 chr6 170805979 + 113005614 113005908 AluY 311 + 5 301 50345 11 0 1 115 0 1 168 chain 74332 chr6 170805979 + 113028644 113030323 L1PB1 5432 + 4313 5417 22997 67 2 0 73 0 2 94 1 0 68 5 6 75 10 9 193 1 3 200 547 0 11 1 0 19 1 0 14 16 11 9 2 0 53 2 1 16 2 1 43 1 0 15 3 0 7 14 5 19 10 7 12 2 0 24 1 0 22 0 3 9 1 0 9 1 0 4 chain 90242 chr6 170805979 + 113042255 113043380 L1PA8 5853 + 4723 5853 19641 89 0 1 168 3 4 21 0 9 41 0 1 505 1 0 46 2 0 71 10 9 4 1 0 48 2 1 19 1 0 93 chain 60416 chr6 170805979 + 113086087 113086815 L1PA7 6471 + 5682 6414 26261 94 0 4 517 1 2 8 0 1 7 3 1 98 chain 15691 chr6 170805979 + 113106801 113106996 L1PA6 6164 + 5935 6130 61411 195 chain 7245 chr6 170805979 + 113162750 113162858 L1MA4 2864 + 2566 2675 76827 62 9 10 37 chain 551247 chr6 170805979 + 113226487 113232514 L1PA2 6032 + 1 6032 659 67 4 5 183 1 0 2882 0 1 2875 1 4 14 chain 58207 chr6 170805979 + 113283303 113284040 L1PA8A 6298 + 5545 6291 26898 35 0 1 83 23 25 266 0 6 330 chain 4928 chr6 170805979 + 113323807 113323868 MER5A 189 + 91 153 86010 57 0 1 4 chain 25321 chr6 170805979 + 113324802 113325232 L1PA14 3548 + 3075 3475 48754 35 7 4 17 2 0 6 1 0 84 1 0 110 1 0 12 5 1 34 4 2 13 2 1 4 1 0 17 14 7 33 6 0 10 1 0 10 chain 41133 chr6 170805979 + 113425066 113425615 L1PA8 5853 + 5308 5853 33894 42 0 1 16 0 3 194 1 0 44 2 0 70 23 21 45 1 0 16 2 1 8 1 0 84 chain 3047 chr6 170805979 + 113428827 113428859 U2 167 + 0 32 99331 32 chain 4559 chr6 170805979 + 113450998 113451065 MER96B 391 + 106 174 88025 29 2 3 36 chain 6188 chr6 170805979 + 113516492 113516600 MER5A1 166 + 0 107 80400 19 21 20 68 chain 556546 chr6 170805979 + 113531122 113537147 L1PA2 6032 + 6 6030 330 246 5 4 5774 chain 116455 chr6 170805979 + 113549694 113550988 L1PA3long 6157 + 4848 6157 16144 599 6 9 564 0 12 125 chain 86663 chr6 170805979 + 113606611 113607539 L1HS 6032 + 4258 5186 20283 928 chain 27743 chr6 170805979 + 113610089 113610447 THE1C 375 + 0 356 45260 182 2 1 166 1 0 7 chain 7709 chr6 170805979 + 113728600 113728698 MER33 330 + 146 244 75602 98 chain 10282 chr6 170805979 + 113737656 113737854 MLT1A0 366 + 113 320 69846 43 16 15 43 35 45 61 chain 28340 chr6 170805979 + 113815427 113815724 AluYa5 310 + 1 298 44354 297 chain 4011 chr6 170805979 + 113840814 113840866 U13 108 + 2 53 91371 20 1 0 31 chain 12097 chr6 170805979 + 113911966 113912137 MSTA 426 + 249 426 66667 51 13 18 49 0 1 58 chain 11856 chr6 170805979 + 113929436 113929596 MLT2A1 477 + 208 368 67102 53 6 7 56 1 0 44 chain 81327 chr6 170805979 + 113931614 113932791 SVA_F 1814 + 10 1795 21365 138 11 1 293 37 0 24 14 91 30 6 82 32 0 120 39 5 168 33 0 213 31 0 1 43 1 0 5 0 1 19 20 22 33 1 3 358 0 1 4 chain 7262 chr6 170805979 + 113939316 113939436 L1PB1 5432 + 5308 5420 76788 19 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 3144 chr6 170805979 + 113977251 113977289 MLT2D 439 + 401 439 98425 38 chain 32034 chr6 170805979 + 114011436 114018365 LTR14 556 + 0 556 40324 231 7 8 79 6395 19 90 0 1 16 1 2 110 chain 28846 chr6 170805979 + 114035267 114035621 L1PA6 6164 + 5810 6162 43559 205 0 1 140 3 0 6 chain 134225 chr6 170805979 + 114072677 114074303 L1PA6 6164 + 4538 6162 13627 111 1 0 363 0 2 9 5 6 288 0 3 246 8 1 264 0 1 82 0 1 87 12 12 142 2 0 6 chain 27057 chr6 170805979 + 114080395 114080783 L1PA16 3655 + 3201 3589 46185 76 15 14 125 6 9 85 0 1 67 3 0 11 chain 37700 chr6 170805979 + 114082649 114083098 LTR10F 562 + 0 562 36274 120 0 115 54 2 0 273 chain 23998 chr6 170805979 + 114136163 114136526 THE1B 368 + 0 368 50794 89 0 1 79 1 0 21 49 54 124 chain 103718 chr6 170805979 + 114148091 114149715 L1PA8 5853 + 4503 5832 17847 212 0 1 23 313 0 40 6 10 163 4 6 29 0 1 16 1 5 75 0 2 478 1 0 46 2 0 68 2 1 8 5 4 10 0 1 38 2 1 18 2 1 37 0 10 25 chain 16075 chr6 170805979 + 114183149 114183512 THE1B 368 + 0 368 60925 60 74 75 24 60 55 17 0 9 128 chain 25061 chr6 170805979 + 114242614 114242876 AluYb8 318 + 43 305 49184 262 chain 6420 chr6 170805979 + 114277388 114277468 MADE1 96 + 0 96 79605 32 1 17 47 chain 85936 chr6 170805979 + 114298625 114299655 MER11C 1089 + 0 1063 20456 221 0 15 14 3 4 63 0 4 369 0 4 43 0 1 36 0 8 281 chain 7202 chr6 170805979 + 114476081 114476163 L1PA8 5853 + 5771 5853 76940 82 chain 110726 chr6 170805979 + 114482090 114483818 L1PREC2 3366 + 1376 3051 16973 218 1 0 100 14 18 469 25 26 41 0 7 172 17 0 121 2 1 48 6 0 155 2 0 54 2 1 20 72 61 16 29 22 25 37 20 31 10 8 41 chain 76592 chr6 170805979 + 114502093 114502968 L1PA5 6144 + 4670 5548 22417 624 5 8 246 chain 103566 chr6 170805979 + 114510149 114511633 L1PB 1623 + 117 1576 17869 52 19 22 78 1 0 15 7 16 98 2 1 69 0 3 13 1 0 105 1 0 4 1 3 682 0 1 32 5 0 139 6 4 30 1 0 5 4 1 11 5 1 14 1 0 8 56 33 19 chain 160696 chr6 170805979 + 114554503 114556415 L1PA7 6471 + 4539 6457 11703 86 1 4 813 0 1 180 1 0 75 0 2 184 0 1 572 chain 146858 chr6 170805979 + 114583442 114585421 L1PBa 3878 + 1729 3748 12551 75 0 1 45 0 11 248 13 15 84 0 11 134 8 9 102 3 4 199 6 11 34 0 4 276 0 2 54 0 2 57 1 0 115 4 1 258 1 2 38 0 5 51 1 2 136 2 1 19 3 1 12 chain 12777 chr6 170805979 + 114585615 114585864 L1PB1 5432 + 5196 5422 65475 24 2 1 15 1 0 45 1 0 15 28 17 11 2 0 8 1 0 14 3 1 23 1 0 21 2 0 13 1 0 18 chain 34110 chr6 170805979 + 114613258 114613628 L1PA3long 6157 + 5777 6147 38628 370 chain 63002 chr6 170805979 + 114658368 114659263 L1PA8 5853 + 4916 5836 25626 93 2 0 73 1 3 170 3 43 106 0 1 89 11 0 70 2 1 45 2 0 126 7 6 18 2 1 75 chain 27766 chr6 170805979 + 114659323 114659677 THE1A 353 + 0 353 45232 105 6 5 243 chain 117720 chr6 170805979 + 114659678 114661279 THE1A-int 1579 + 1 1579 15932 14 0 2 80 1 2 142 7 10 17 33 1 233 2 1 86 1 2 128 49 16 9 0 33 487 0 1 19 0 1 284 0 1 9 chain 6424 chr6 170805979 + 114661279 114661383 THE1A 353 + 0 107 79591 60 11 14 33 chain 18282 chr6 170805979 + 114661387 114661607 THE1A 353 + 110 330 58382 220 chain 8825 chr6 170805979 + 114663609 114663705 L1PA16 3655 + 3317 3413 72935 96 chain 5801 chr6 170805979 + 114747721 114747791 MER41A 554 + 399 469 81917 70 chain 4336 chr6 170805979 + 114778537 114778588 MADE1 96 + 45 96 89257 51 chain 34729 chr6 170805979 + 114836847 114837233 L1PA6 6164 + 5422 5808 38205 386 chain 45495 chr6 170805979 + 114865297 114865826 L1P1 4361 + 2 533 31308 28 0 2 501 chain 3590 chr6 170805979 + 114883124 114883164 L1PA16 3655 + 2231 2271 94514 40 chain 7100 chr6 170805979 + 114892089 114892176 L1P1 4361 + 318 406 77263 83 0 1 4 chain 123029 chr6 170805979 + 114917800 114919166 L1PA4 6152 + 1622 2988 15020 1366 chain 46063 chr6 170805979 + 114952365 114952969 LTR19B 566 + 0 566 31035 94 0 5 77 0 2 28 45 0 360 chain 40532 chr6 170805979 + 114987805 114988359 MLT2A2 560 + 0 560 34284 14 5 1 148 19 17 150 0 1 71 0 11 147 chain 484235 chr6 170805979 + 115009070 115014474 L1PA3long 6157 + 620 6157 3547 148 10 138 2791 0 2 1610 0 3 845 chain 62359 chr6 170805979 + 115016988 115017693 L1P1 4361 + 3625 4328 25786 525 1 0 155 1 0 23 chain 39745 chr6 170805979 + 115031792 115032234 LTR7 482 + 0 473 34860 264 0 31 178 chain 289360 chr6 170805979 + 115032245 115035909 HERVH-int 3825 + 0 3816 7148 181 0 2 29 0 11 309 70 0 38 1 0 10 1 0 24 28 0 15 1 0 12 3 0 26 0 20 40 22 1 11 2 1 49 1 0 874 0 4 24 8 35 251 0 1 1023 133 347 478 chain 40022 chr6 170805979 + 115037169 115037619 LTR7 482 + 0 482 34637 225 0 1 38 0 31 187 chain 100207 chr6 170805979 + 115037622 115038886 L1PA7 6471 + 5187 6469 18277 96 0 7 8 8 1 46 2 1 275 9 7 50 4 5 226 0 1 355 0 17 8 0 2 177 chain 434415 chr6 170805979 + 115081909 115086721 L1PA3long 6157 + 1331 6147 4677 1378 0 5 3184 1 0 249 chain 22487 chr6 170805979 + 115092102 115092464 L1PA8 5853 + 5492 5853 53136 29 11 13 28 1 0 41 7 10 49 1 0 16 2 1 14 1 0 47 2 1 15 7 6 91 chain 73620 chr6 170805979 + 115113627 115114433 L1PA3long 6157 + 4725 5531 23190 806 chain 42831 chr6 170805979 + 115114433 115114904 L1PA3long 6157 + 5532 6003 32871 471 chain 13124 chr6 170805979 + 115114911 115115054 L1PA3long 6157 + 6011 6154 64888 143 chain 338723 chr6 170805979 + 115121256 115125215 L1P1 4361 + 1 3957 6094 336 6 7 230 1 0 128 12 5 471 0 3 775 4 5 1996 chain 54677 chr6 170805979 + 115147009 115147647 L1PA6 6164 + 5509 6154 27982 458 0 7 180 chain 548151 chr6 170805979 + 115175227 115181228 L1PA2 6032 + 3 6030 851 844 3 2 2367 0 22 1941 1 5 833 0 1 12 chain 520549 chr6 170805979 + 115222088 115228207 L1PA5 6144 + 0 6132 2252 800 0 6 145 1 2 9 0 1 70 1 0 421 0 1 128 0 1 227 0 1 1350 3 0 771 0 1 583 5 1 217 10 10 94 0 1 426 0 1 30 0 4 203 0 1 393 0 1 72 13 14 147 chain 535911 chr6 170805979 + 115250072 115256240 L1PA4 6152 + 2 6151 1570 398 0 1 179 1 0 242 31 14 400 0 1 906 5 6 1015 3 1 1696 0 1 1274 3 0 15 chain 44940 chr6 170805979 + 115294489 115295025 L1PA5 6144 + 5604 6143 31610 383 8 11 145 chain 133419 chr6 170805979 + 115298802 115300825 L1PA7 6471 + 4783 6470 13698 65 0 1 4 1 0 126 0 1 58 6 18 334 0 2 220 21 0 151 10 12 32 337 1 131 0 1 102 0 2 318 0 1 107 chain 28767 chr6 170805979 + 115303387 115303692 AluYa5 310 + 0 304 43676 132 1 0 172 chain 2592 chr6 170805979 + 115308538 115308570 L1PA7 6471 + 6105 6137 103053 32 chain 27115 chr6 170805979 + 115308574 115308896 L1PA7 6471 + 6139 6461 46102 322 chain 23290 chr6 170805979 + 115365605 115365916 THE1B 368 + 0 323 51943 44 6 21 107 1 0 19 2 0 132 chain 15793 chr6 170805979 + 115415147 115415323 SVA_A 1864 + 1688 1862 61295 169 2 0 5 chain 42208 chr6 170805979 + 115416285 115416836 MER41A 554 + 0 554 33243 62 2 0 110 1 2 223 8 12 145 chain 452917 chr6 170805979 + 115516534 115522247 L1PA8 5853 + 114 5846 4307 188 9 13 87 1 12 219 0 3 736 5 7 512 0 1 120 8 6 67 10 11 558 0 1 215 0 1 6 1 0 5 1 0 31 1 0 483 4 0 194 2 3 278 1 2 231 0 3 8 0 2 878 0 1 10 1 3 85 0 1 453 15 14 49 2 0 71 1 0 7 1 0 51 2 1 19 1 0 86 chain 277338 chr6 170805979 + 115545670 115549733 L1PA10 4194 + 175 4150 7511 14 4 0 10 3 0 10 2 0 7 11 7 9 2 0 8 1 0 10 1 0 21 2 0 15 1 0 8 56 30 11 2 0 18 1 0 8 2 1 8 1 0 12 17 15 6 1 0 79 4 2 9 0 1 50 0 3 361 39 41 34 2 3 44 1 2 212 9 6 19 27 0 165 0 1 9 24 5 173 0 2 67 10 11 57 3 0 8 0 2 78 0 1 80 1 0 35 15 1 51 6 10 221 2 6 91 0 1 198 0 2 6 1 0 73 0 8 25 1 0 52 0 5 25 0 1 7 1 2 120 0 1 14 1 4 26 1 4 44 1 0 170 13 6 314 6 7 528 0 1 95 1 0 30 9 5 33 chain 121669 chr6 170805979 + 115586589 115588159 THE1A-int 1579 + 0 1574 15234 235 0 2 124 5 6 304 3 2 122 23 22 103 0 1 311 0 1 278 0 1 62 chain 161767 chr6 170805979 + 115592679 115594488 L1PA4 6152 + 4067 5877 11625 1233 0 1 576 chain 40483 chr6 170805979 + 115615529 115615988 L1PA4 6152 + 5691 6151 34320 206 0 1 253 chain 317803 chr6 170805979 + 115644851 115648983 L1P3 4156 + 0 4137 6449 251 2 1 22 13 13 33 1 0 605 5 0 6 0 5 138 0 1 143 0 1 83 28 15 151 1 0 17 21 24 391 5 7 118 2 1 201 0 3 24 1 0 96 1 0 4 0 1 267 5 8 4 1 0 82 3 0 4 8 0 375 0 3 275 12 24 43 0 2 27 5 9 113 1 2 114 0 3 41 13 13 343 2 0 7 2 1 22 chain 55577 chr6 170805979 + 115649489 115650148 L1PA7 6471 + 5786 6447 27693 519 6 8 134 chain 23400 chr6 170805979 + 115660118 115660457 L1PB1 5432 + 1269 1612 51756 126 2 1 6 2 0 5 2 0 100 19 28 77 chain 153022 chr6 170805979 + 115696135 115698035 L1PA7 6471 + 4545 6469 12176 126 0 4 41 0 16 223 1 0 668 0 5 11 0 1 4 14 10 230 0 1 116 0 1 32 1 0 200 5 6 73 0 1 155 chain 12415 chr6 170805979 + 115734889 115735111 THE1D 372 + 109 333 66110 30 5 6 21 44 45 122 chain 416888 chr6 170805979 + 115742302 115747074 L1PA5 6144 + 1292 6074 4922 1020 0 1 249 0 4 141 0 1 468 0 1 1161 3 7 564 2 3 1077 4 0 6 5 7 72 chain 43314 chr6 170805979 + 115804551 115805163 L1PA11 4918 + 3907 4504 32556 422 16 8 11 1 0 45 2 1 13 2 0 68 5 3 9 1 0 17 chain 57666 chr6 170805979 + 115836506 115837167 SVA_B 1603 + 908 1603 27062 13 4 0 14 0 41 14 1 0 608 2 0 5 chain 507760 chr6 170805979 + 115852005 115860057 L1PA7 6471 + 0 6430 2858 207 0 2 191 3 4 728 7 8 135 7 6 4 0 1 34 6 0 564 5 4 564 0 3 102 0 1 82 6 7 54 0 1 40 0 2 34 0 5 37 0 1 42 70 0 93 1597 0 528 3 2 55 1 2 293 2 0 318 0 3 107 4 1 258 0 1 62 1 2 80 0 4 950 0 2 57 9 17 155 0 1 256 3 1 109 9 30 180 chain 19878 chr6 170805979 + 115861455 115861831 THE1D 372 + 0 372 56566 15 0 2 15 1 0 16 9 0 8 3 4 14 15 16 48 0 1 41 59 60 132 chain 106323 chr6 170805979 + 115888923 115890305 LTR12C 1709 + 0 1709 17521 266 0 1 6 22 25 38 0 43 85 0 4 54 0 8 118 0 278 146 0 2 38 1 0 5 3 1 99 18 11 74 5 6 304 7 2 11 1 0 60 1 4 20 chain 514778 chr6 170805979 + 115935049 115941505 L1PA7 6471 + 0 6470 2527 243 0 1 168 1 0 196 18 18 23 1 2 58 4 1 67 10 19 24 0 1 67 5 9 7 4 0 349 0 19 464 0 1 690 0 1 73 0 2 129 2 0 515 9 11 391 2 6 332 5 0 121 10 0 228 0 4 73 10 11 39 5 6 172 1 0 124 0 4 624 0 1 327 1 0 99 0 2 91 1 0 6 13 1 22 10 2 163 0 6 451 2 0 6 chain 15550 chr6 170805979 + 115949479 115949663 L1PA7 6471 + 4756 4940 61588 184 chain 58000 chr6 170805979 + 115949669 115950345 L1PA7 6471 + 4947 5623 26964 676 chain 11964 chr6 170805979 + 115950345 115950494 L1PA7 6471 + 5629 5785 66891 94 0 7 55 chain 54212 chr6 170805979 + 115950494 115951124 L1PA7 6471 + 5786 6415 28149 140 1 0 489 chain 70316 chr6 170805979 + 115952313 115953082 L1PA3long 6157 + 5388 6157 23913 769 chain 560412 chr6 170805979 + 115960032 115966060 L1PA2 6032 + 1 6029 160 6028 chain 15028 chr6 170805979 + 115973267 115973462 L1PA7 6471 + 6169 6364 62230 144 2 0 5 9 11 35 chain 7850 chr6 170805979 + 115973463 115973556 L1PA7 6471 + 6366 6459 75256 93 chain 432842 chr6 170805979 + 116041456 116046782 L1PA7 6471 + 4 6461 4708 144 0 6 6 8 5 239 1 3 72 1 0 423 2 1170 560 1 0 15 0 1 225 0 1 21 2 0 98 6 7 602 0 3 227 1 0 4 0 1 249 6 7 6 0 1 515 0 2 338 1 0 407 58 0 259 1 0 196 0 11 20 0 1 612 chain 32710 chr6 170805979 + 116066038 116066504 MLT2A1 477 + 0 477 39752 141 11 12 16 1 5 88 0 1 60 1 0 62 4 0 12 27 37 43 chain 26756 chr6 170805979 + 116091093 116091551 LTR12_ 688 + 0 677 46608 16 9 8 29 0 41 44 24 8 21 48 7 175 0 103 19 0 133 73 chain 47843 chr6 170805979 + 116096313 116096944 LTR12 884 + 0 873 30345 24 2 1 17 0 8 290 1 2 36 2 0 202 0 236 57 chain 48704 chr6 170805979 + 116160821 116161351 L1PA3long 6157 + 5627 6157 30048 530 chain 14237 chr6 170805979 + 116205085 116205262 MER107 203 + 20 203 63280 142 0 6 35 chain 517360 chr6 170805979 + 116342691 116349116 L1PA5 6144 + 0 6132 2407 119 1 15 22 0 12 551 20 20 226 0 16 188 9 0 245 0 3 495 0 1 91 9 18 281 5 6 4 0 1 50 0 1 65 0 4 2009 0 1 214 1 0 94 22 0 148 1 0 383 12 11 174 329 0 504 1 13 8 5 0 139 chain 24802 chr6 170805979 + 116475824 116476119 AluSc5 308 + 1 295 49588 256 2 1 37 chain 154596 chr6 170805979 + 116489478 116491522 L1PA7 6471 + 2215 4136 12080 239 14 6 181 1 0 53 2 1 5 0 1 196 3 7 593 1 0 31 0 1 156 121 1 68 0 1 247 0 1 133 chain 507543 chr6 170805979 + 116500869 116507010 L1PA6 6164 + 0 6153 2868 326 6 0 123 19 0 117 1 0 226 0 16 169 0 1 197 0 1 877 0 1 108 4 5 524 0 1 198 0 2 287 5 0 6 2 0 4 0 1 127 1 0 250 1 0 135 0 1 150 0 14 1059 0 1 253 2 1 131 0 4 78 0 2 607 4 6 144 chain 107077 chr6 170805979 + 116508727 116510274 L1PB3 3668 + 1746 3291 17425 81 28 22 65 14 17 185 21 7 249 1 0 161 0 20 114 6 5 316 2 0 15 3 0 98 0 1 50 59 60 79 chain 10170 chr6 170805979 + 116527811 116527961 L1PA8 5853 + 5705 5853 70070 35 2 1 19 2 1 92 chain 46317 chr6 170805979 + 116604614 116605368 L1PB1 5432 + 4686 5430 30915 156 3 2 147 3 6 53 0 1 48 7 15 24 1 0 9 1 0 10 6 2 9 2 0 54 0 2 12 1 0 43 5 4 13 2 0 6 16 6 19 2 0 6 1 0 13 0 5 6 6 0 13 1 0 21 0 7 5 2 1 18 2 0 8 chain 50454 chr6 170805979 + 116612631 116613361 L1PA8A 6298 + 5527 6287 29396 88 1 0 4 0 1 240 29 33 248 45 71 75 chain 559150 chr6 170805979 + 116638702 116644847 L1PA3long 6157 + 4 6155 197 875 0 2 2385 0 4 2885 chain 35226 chr6 170805979 + 116679166 116679995 MER41B 635 + 0 561 37882 110 1 4 12 4 5 30 0 1 21 1 0 6 0 1 140 45 50 71 282 5 10 1 0 95 chain 24009 chr6 170805979 + 116681987 116682332 AluY 311 + 3 288 50776 128 62 0 104 0 2 51 chain 2947 chr6 170805979 + 116712385 116712416 U2 167 + 0 31 100402 31 chain 262387 chr6 170805979 + 116738094 116740996 L1PA3long 6157 + 3237 6149 7897 277 0 1 445 1 0 402 0 4 427 0 2 515 0 4 835 chain 4621 chr6 170805979 + 116750667 116750839 L1MA4 2864 + 2671 2805 87693 14 91 55 25 7 5 35 chain 4642 chr6 170805979 + 116756804 116756914 Tigger1 2417 + 2298 2417 87582 41 26 9 11 10 36 22 chain 182383 chr6 170805979 + 116812641 116814761 L1PA6 6164 + 4036 6161 10475 508 0 1 769 0 5 507 0 1 327 2 0 7 chain 551477 chr6 170805979 + 116816523 116822872 L1PA2 6032 + 0 6031 639 1020 0 6 697 326 0 1517 0 1 2633 0 1 156 chain 215829 chr6 170805979 + 116851768 116855208 L1PA11 4918 + 1136 4629 9152 560 1 0 7 0 1 79 24 11 18 1 2 103 0 2 85 0 390 14 5 1 11 2 1 117 1 2 7 1 0 216 300 0 67 16 14 130 0 1 85 0 16 232 0 1 117 0 1 4 1 0 302 5 1 78 1 0 45 39 41 430 5 0 61 11 12 6 2 0 15 0 3 29 20 18 6 0 1 9 2 1 22 19 9 10 13 9 10 6 5 12 3 1 11 8 2 13 1 0 5 19 13 18 chain 9327 chr6 170805979 + 116912019 116912131 L1PA16 3655 + 3425 3537 71859 112 chain 19400 chr6 170805979 + 116984178 116984525 THE1B 368 + 0 368 57130 44 0 15 22 14 10 78 1 0 8 0 1 10 61 71 109 chain 8837 chr6 170805979 + 116997792 116998021 MER4C 627 + 359 627 72900 19 21 64 53 74 70 62 chain 183614 chr6 170805979 + 117013928 117018348 L1PB1 5432 + 2725 5326 10404 109 0 1 95 0 4 443 1422 0 16 7 8 27 48 0 81 17 21 203 4 7 335 51 27 67 1 0 28 7 9 340 1 0 82 3 0 176 8 9 31 311 1 258 15 11 20 1 0 12 1 0 12 5 1 9 2 0 49 21 19 41 4 3 21 18 7 18 chain 112854 chr6 170805979 + 117014579 117015997 LTR12C 1709 + 0 1709 16692 268 1 6 20 14 15 92 0 1 99 8 9 209 0 118 20 0 5 50 0 2 159 0 51 100 0 4 212 0 1 15 0 101 55 1 2 13 1 0 66 0 1 15 chain 33830 chr6 170805979 + 117074336 117074736 THE1B-int 1605 + 0 400 38826 400 chain 21941 chr6 170805979 + 117082909 117083243 THE1C 375 + 16 363 53916 35 0 11 74 9 10 39 21 23 142 2 1 12 chain 66140 chr6 170805979 + 117093006 117093727 L1PA2 6032 + 4523 5244 24924 721 chain 566273 chr6 170805979 + 117102131 117108163 L1HS 6032 + 0 6032 58 6032 chain 76047 chr6 170805979 + 117123876 117124775 L1PA7 6471 + 3862 4762 22553 131 9 10 759 chain 450911 chr6 170805979 + 117175392 117180998 L1PA7 6471 + 816 6470 4372 76 4 0 6 1 5 131 1 3 16 8 9 198 8 9 80 1 0 13 2 3 16 0 1 97 0 1 208 18 15 191 0 3 560 0 1 178 6 0 257 1 0 203 0 7 14 0 1 234 1 2 130 3 2 11 1 0 69 0 1 363 0 18 76 11 27 184 0 1 666 9 13 69 1 2 561 0 1 65 5 4 670 11 12 167 1 0 4 chain 541965 chr6 170805979 + 117181817 117187824 L1PA3long 6157 + 0 6157 1209 152 0 1 102 0 1 521 1 129 140 1 0 4171 0 21 919 chain 550193 chr6 170805979 + 117244752 117250778 L1PA2 6032 + 0 6027 731 74 0 1 165 0 1 16 1 0 175 5 0 6 0 5 5584 chain 8820 chr6 170805979 + 117252971 117253066 L1PA2 6032 + 5937 6032 72948 95 chain 5863 chr6 170805979 + 117257404 117257508 MSTD 398 + 1 112 81632 18 0 10 5 2 0 38 15 14 26 chain 27824 chr6 170805979 + 117282252 117282599 THE1C 375 + 0 347 45149 23 1 0 162 0 2 71 1 0 89 chain 485452 chr6 170805979 + 117329676 117335945 L1PA8A 6298 + 59 6289 3523 5 3 0 6 2 0 8 6 1 15 1 7 18 52 40 14 8 9 6 2 0 13 10 7 13 1 0 8 1 0 7 1 0 7 2 1 13 17 12 39 1 0 20 6 0 80 2 0 16 18 11 334 1 0 6 1 2 102 1 0 161 0 1 87 4 1 12 5 0 83 1 0 53 6 8 75 1 2 345 0 3 5 3 0 302 0 1 298 0 2 192 8 4 620 0 2 236 9 7 10 10 10 7 8 0 10 1 5 53 0 1 131 0 5 262 1 8 245 6 0 823 0 4 205 0 1 330 2 1 53 4 6 24 0 1 358 1 4 353 chain 105582 chr6 170805979 + 117373846 117375430 L1PB1 5432 + 3656 5422 17611 70 36 60 9 8 0 363 0 14 32 0 1 299 3 7 116 12 182 166 0 1 103 6 10 14 3 4 7 1 0 24 8 6 14 5 1 9 2 0 30 0 1 18 7 8 11 1 0 45 1 0 13 26 14 18 3 1 5 1 0 10 6 4 20 8 7 20 1 0 11 1 0 18 chain 20907 chr6 170805979 + 117398715 117398985 AluSc8 310 + 23 299 55245 108 11 15 122 0 2 29 chain 68412 chr6 170805979 + 117407631 117408405 L1PA4 6152 + 4555 5332 24354 74 0 1 174 0 1 63 0 1 463 chain 6831 chr6 170805979 + 117415818 117415912 MER5A1 166 + 38 127 78201 6 5 0 83 chain 12246 chr6 170805979 + 117423043 117423293 L1PB1 5432 + 5188 5418 66378 32 2 1 16 1 0 44 1 0 15 2 0 6 16 6 19 23 21 24 1 0 19 1 0 13 1 0 14 chain 9801 chr6 170805979 + 117463408 117463571 Tigger3a 397 + 149 320 70815 88 20 0 10 7 5 13 0 30 25 chain 34705 chr6 170805979 + 117611859 117612307 MER4A1 472 + 1 472 38218 14 0 2 215 0 21 45 4 0 6 12 16 152 chain 51338 chr6 170805979 + 117615273 117615864 LTR10C 591 + 0 591 29104 591 chain 41288 chr6 170805979 + 117618042 117618640 HERVIP10FH-int 2884 + 165 762 33792 23 0 1 16 11 10 41 0 2 29 14 11 19 0 1 5 1 0 71 2 0 238 16 17 72 0 1 40 chain 49633 chr6 170805979 + 117621415 117622007 LTR10C 591 + 0 591 29706 13 0 1 60 2 0 517 chain 153457 chr6 170805979 + 117626338 117628949 MER4-int 2692 + 57 2385 12151 16 16 17 50 18 126 5 0 1 38 50 0 117 1 3 132 0 1 32 1 2 61 0 1 26 2 6 34 5 1 162 11 5 26 88 0 118 7 8 75 1 0 123 0 1 72 0 1 99 3 4 47 9 16 24 6 1 162 0 1 62 0 5 15 0 1 26 1 0 53 0 1 20 0 1 89 0 19 51 296 5 253 0 3 7 0 2 101 chain 3599 chr6 170805979 + 117627147 117627187 MER4-int 2692 + 926 966 94436 40 chain 507765 chr6 170805979 + 117645311 117651683 L1PA7 6471 + 0 6469 2857 321 7 5 80 8 0 152 11 10 109 20 40 272 5 6 29 0 22 228 0 2 354 0 1 31 0 1 493 4 9 231 1 2 232 13 6 70 0 4 27 0 34 222 6 3 215 0 1 121 0 1 44 0 6 160 1 5 205 1 2 73 0 1 172 0 3 14 0 1 189 0 2 127 0 1 256 6 5 501 1 0 402 0 1 8 0 2 107 2 0 82 1 0 96 0 4 611 0 4 51 chain 30338 chr6 170805979 + 117657215 117657945 LTR7B 505 + 0 490 41721 108 0 10 57 0 38 12 3 27 15 312 0 13 0 2 83 1 0 76 14 13 36 chain 557113 chr6 170805979 + 117721296 117727439 L1PA3long 6157 + 0 6157 293 1460 0 4 926 0 4 146 0 2 2768 0 4 843 chain 434885 chr6 170805979 + 117745732 117752410 L1PA7 6471 + 5 6056 4667 563 0 423 195 0 8 480 1 6 117 8 9 216 0 1 58 0 1 391 0 1 162 1 2 49 2 1 305 0 3 100 0 4 54 0 2 347 1 0 317 5 6 158 0 1 21 1 0 282 0 4 259 1 197 40 6 4 127 0 1 22 1 2 11 0 2 5 5 25 228 0 9 86 1308 0 73 0 1 117 3 0 113 0 3 138 6 5 263 0 1 32 chain 113163 chr6 170805979 + 117750372 117751657 SVA_C 1631 + 16 1631 16655 4 0 1 657 1 78 71 10 266 521 4 0 17 chain 179036 chr6 170805979 + 117854802 117856855 L1PA4 6152 + 988 3038 10631 253 1 2 536 5 0 505 0 1 753 chain 37844 chr6 170805979 + 117928865 117929350 LOR1a 498 + 0 485 36177 80 1 0 13 2 3 389 chain 58088 chr6 170805979 + 117965735 117966652 LTR12D 1347 + 399 1347 26937 137 22 54 108 1 18 22 27 3 78 31 5 23 0 1 4 1 0 151 37 33 11 2 1 27 0 7 16 1 0 3 2 0 123 0 33 90 chain 3840 chr6 170805979 + 117978728 117978794 MER53 195 + 0 67 92561 35 9 10 22 chain 258706 chr6 170805979 + 117996322 118000000 L1P1 4361 + 2 3533 8005 83 0 523 5 0 2 87 12 5 290 0 8 2109 672 0 51 1 0 368 chain 235546 chr6 170805979 + 118000000 118002610 L1PA3long 6157 + 3545 6157 8583 346 0 1 2117 0 1 147 chain 18548 chr6 170805979 + 118029334 118029638 MER44A 345 + 68 345 58050 49 13 7 106 9 0 8 0 1 5 4 0 21 18 9 71 chain 38534 chr6 170805979 + 118037542 118038035 L1PA8 5853 + 5367 5853 35683 194 2 1 46 2 0 70 2 1 8 2 1 52 2 1 19 1 0 93 chain 162962 chr6 170805979 + 118048405 118050192 L1PA4 6152 + 4181 5968 11546 1787 chain 37638 chr6 170805979 + 118111848 118112575 MER41C 542 + 0 507 36313 49 0 1 142 227 0 128 8 11 72 1 4 100 chain 118767 chr6 170805979 + 118127516 118128815 L1PA3long 6157 + 4852 6151 15757 1299 chain 20070 chr6 170805979 + 118156432 118156669 L1PA6 6164 + 5913 6156 56293 157 0 6 80 chain 60972 chr6 170805979 + 118219418 118220176 L1PA5 6144 + 5397 6143 26113 41 7 0 105 6 8 46 13 4 79 1 2 361 0 1 99 chain 21912 chr6 170805979 + 118232280 118232568 AluSp 311 + 11 302 53958 53 17 19 13 0 1 205 chain 27554 chr6 170805979 + 118361211 118361501 AluYd8 298 + 0 290 45506 290 chain 149766 chr6 170805979 + 118379382 118381177 L1PA7 6471 + 4672 6470 12365 100 0 1 651 0 1 184 5 4 326 0 1 516 0 2 8 1 0 4 chain 209393 chr6 170805979 + 118409510 118413235 L1PA13 3608 + 535 3435 9371 52 305 0 25 0 1 17 0 27 248 11 10 138 6 5 27 0 1 301 11 10 409 4 26 41 7 0 67 0 1 415 3 0 260 267 14 37 0 1 231 0 1 93 1 2 83 0 1 53 1 0 27 1 0 25 0 3 7 299 0 4 1 0 10 7 0 10 7 5 7 0 4 39 2 0 63 1 0 48 15 12 39 chain 17176 chr6 170805979 + 118420820 118421026 L1P3 4156 + 3376 3583 59600 60 0 1 146 chain 414564 chr6 170805979 + 118421033 118426208 L1P2 5180 + 2 5173 4968 148 2 1 42 8 7 44 8 7 195 19 0 69 1 0 50 1 0 218 0 15 451 0 1 921 0 1 224 9 7 211 0 1 132 0 1 139 6 2 282 1 0 60 1 5 56 1 0 41 0 4 658 1 2 271 0 3 185 0 1 184 2 0 124 0 1 116 1 0 207 1 0 46 1 0 38 chain 550902 chr6 170805979 + 118426816 118432950 L1PA3long 6157 + 9 6155 685 452 0 1 266 0 1 519 0 1 1109 1 0 34 0 4 1681 0 1 279 0 4 1034 1 2 758 chain 29134 chr6 170805979 + 118432950 118433331 L1PA6 6164 + 5782 6162 43145 77 0 6 291 7 0 6 chain 59410 chr6 170805979 + 118433332 118434118 L1PA3long 6157 + 3259 4057 26532 260 5 6 72 0 10 109 12 13 328 chain 8788 chr6 170805979 + 118495176 118495278 THE1C-int 1605 + 1489 1591 73019 102 chain 106771 chr6 170805979 + 118495661 118497629 Charlie3 2679 + 1035 2674 17461 90 39 35 100 0 3 38 0 1 129 89 90 95 0 1 88 331 2 169 3 0 44 1 0 135 1 0 54 3 4 22 3 4 11 5 6 311 1 2 70 0 33 7 33 0 18 0 1 5 3 0 10 7 8 53 chain 2829 chr6 170805979 + 118591523 118591553 MER51A 677 + 199 229 101417 30 chain 8454 chr6 170805979 + 118598395 118598800 MLT1C 463 + 63 463 73788 43 241 236 23 11 10 35 9 10 43 chain 26620 chr6 170805979 + 118618429 118619294 HERV30-int 1034 + 137 735 46803 10 24 0 12 53 48 29 65 32 45 5 0 41 12 0 78 1 0 89 21 6 34 71 31 26 200 68 49 chain 65918 chr6 170805979 + 118687379 118688151 LTR17 781 + 0 781 24974 327 0 1 115 3 11 327 chain 3112 chr6 170805979 + 118718836 118718871 5S 121 + 55 90 98671 35 chain 27321 chr6 170805979 + 118786071 118786357 AluYc 301 + 0 286 45798 286 chain 30803 chr6 170805979 + 118793873 118794260 MLT2A1 477 + 0 385 41305 169 4 1 33 0 1 181 chain 227382 chr6 170805979 + 118796308 118798934 L1PA4 6152 + 3 5187 8833 606 0 2545 733 0 2 458 0 4 380 0 7 449 chain 92164 chr6 170805979 + 118868348 118869417 L1PA6 6164 + 5082 6162 19315 233 0 5 378 0 2 162 0 4 296 chain 34856 chr6 170805979 + 118951352 118951801 MER4A1 472 + 0 472 38121 14 0 4 172 7 5 122 0 20 110 0 1 24 chain 25441 chr6 170805979 + 118968936 118969310 THE1C 375 + 0 375 48566 20 1 2 108 11 15 30 7 3 11 8 9 151 1 0 26 chain 3521 chr6 170805979 + 118987241 118987324 MER58A 224 + 122 208 95096 11 2 0 5 18 23 14 0 1 4 1 0 28 chain 7015 chr6 170805979 + 118992490 118992648 MLT1A0 366 + 153 310 77556 17 61 60 80 chain 25677 chr6 170805979 + 119009245 119009614 THE1B 368 + 0 367 48205 63 40 41 64 3 0 126 1 0 61 0 1 11 chain 130360 chr6 170805979 + 119015142 119016690 LTR12C 1709 + 0 1709 13995 436 0 1 65 1 0 68 5 0 6 1 6 117 0 159 253 1 0 5 2 1 107 0 4 481 chain 45914 chr6 170805979 + 119038273 119038827 MER41A 554 + 0 554 31096 554 chain 64180 chr6 170805979 + 119041284 119042042 LTR17 781 + 0 781 25374 326 0 1 401 0 22 31 chain 11879 chr6 170805979 + 119046853 119047019 L1MA1 4479 + 3982 4148 67053 96 6 8 21 2 0 41 chain 116045 chr6 170805979 + 119047536 119049161 L1PREC2 3366 + 1379 2867 16226 383 3 0 235 0 1 506 143 15 233 3 1 39 15 14 44 7 3 14 chain 28572 chr6 170805979 + 119050524 119050827 AluYb8 318 + 0 304 43995 156 0 1 147 chain 15080 chr6 170805979 + 119113964 119114161 MER44A 345 + 135 336 62172 38 0 4 159 chain 85250 chr6 170805979 + 119118450 119119534 MER11B 1079 + 0 1079 20580 259 3 0 153 0 2 137 45 44 144 0 1 32 8 2 280 0 2 23 chain 50241 chr6 170805979 + 119127920 119129279 MER4D0 881 + 0 801 29468 29 4 0 6 1 5 71 15 6 90 0 1 21 540 0 133 4 0 6 10 0 37 7 3 31 15 19 37 4 9 15 0 1 4 5 10 19 2 0 9 2 1 80 8 7 90 2 1 55 2 0 5 chain 166314 chr6 170805979 + 119166851 119168899 L1PA8 5853 + 3128 5154 11315 83 0 1 938 0 1 150 0 3 172 33 0 457 1 0 73 1 6 61 9 11 70 chain 4797 chr6 170805979 + 119202947 119203170 MLT1A0 366 + 124 312 86717 17 152 117 54 chain 27268 chr6 170805979 + 119262812 119263165 MLT2A1 477 + 0 358 45870 141 1 2 25 1 5 185 chain 3217 chr6 170805979 + 119313651 119313732 MER53 195 - 105 195 97741 15 9 8 28 15 25 14 chain 3454 chr6 170805979 + 119336367 119336410 MER5A 189 + 122 167 95601 12 0 2 31 chain 92077 chr6 170805979 + 119376409 119377492 L1PA4 6152 + 5000 6081 19328 5 0 1 657 4 1 417 chain 19223 chr6 170805979 + 119386306 119386578 L1PA8 5853 + 5586 5853 57323 6 2 0 15 0 1 68 5 4 6 1 0 54 2 1 19 1 0 93 chain 532732 chr6 170805979 + 119399993 119406097 L1PA4 6152 + 12 6141 1721 1050 1 3 1735 0 11 320 1 0 46 1 0 79 9 7 515 0 1 856 1 0 461 6 1 146 1 17 44 0 4 109 0 1 723 chain 508649 chr6 170805979 + 119417672 119424022 L1PA7 6471 + 3 6407 2816 159 11 10 115 1 3 30 0 26 66 1 0 47 1 0 4 0 1 250 37 19 47 0 1 106 26 29 5 3 0 170 0 1 177 9 10 21 0 1 435 1 9 170 0 1 246 5 12 257 1 2 206 1 2 307 0 9 105 2 1 231 0 1 309 0 1 330 3 0 320 3 4 194 0 1 64 1 3 104 1 0 113 0 1 286 0 1 53 0 1 42 4 3 279 0 1 219 0 2 18 1 2 34 2 8 10 0 2 707 chain 122165 chr6 170805979 + 119440832 119442418 LTR12C 1709 + 0 1709 15168 17 11 25 356 0 1 35 0 1 29 15 9 176 0 2 68 0 118 112 50 0 20 0 41 102 1 0 5 3 1 106 11 4 177 0 4 247 0 8 45 chain 4052 chr6 170805979 + 119441651 119441701 LTR12C 1709 + 1109 1156 53201 3 1 0 4 4 2 38 chain 16498 chr6 170805979 + 119444236 119444614 MSTA 426 + 0 421 60378 54 0 1 53 127 155 37 8 16 39 7 13 53 chain 395524 chr6 170805979 + 119487297 119493502 L1PB1 5432 + 19 5424 5226 27 9 10 331 14 12 6 0 3 184 20 21 136 3 9 223 12 19 352 577 6 37 1 0 7 2 0 5 67 42 218 0 5 223 0 13 231 1 0 43 0 1 28 2 0 281 0 1 221 9 1 110 0 1 4 3 0 903 14 10 85 0 1 175 5 1 253 17 8 280 1 0 36 0 1 43 4 0 79 0 2 396 177 4 7 3 0 12 38 32 11 3 1 50 2 1 16 1 0 44 1 0 15 1 0 4 18 8 19 24 19 24 1 0 34 1 0 16 1 0 4 chain 91418 chr6 170805979 + 119553525 119554597 MER11C 1089 + 0 1073 19433 586 12 13 474 chain 65083 chr6 170805979 + 119664755 119665507 L1PA6 6164 + 5385 6139 25171 103 0 1 268 0 1 381 chain 25651 chr6 170805979 + 119665760 119666146 LTR12C 1709 + 913 1709 48241 37 0 207 60 42 11 135 0 1 49 0 233 63 chain 27622 chr6 170805979 + 119732203 119732558 THE1A 353 + 0 353 45432 109 2 1 92 1 0 151 chain 30306 chr6 170805979 + 119748711 119749051 L1PA5 6144 + 3841 4181 41754 340 chain 65408 chr6 170805979 + 119755460 119756255 L1P3 4156 + 3298 4103 25089 95 0 6 147 0 4 553 chain 53160 chr6 170805979 + 119787597 119788268 LTR12_ 688 + 0 680 28510 152 0 1 44 1 0 118 7 0 200 1 17 148 chain 91156 chr6 170805979 + 119906568 119907635 MER11C 1089 + 6 1079 19475 219 0 5 455 1 2 4 0 1 306 1 0 81 chain 19730 chr6 170805979 + 120005532 120005899 THE1D 372 + 3 372 56751 12 0 2 31 24 15 37 1 0 28 0 4 33 57 61 5 0 3 106 1 0 32 chain 93849 chr6 170805979 + 120015905 120016970 L1PA5 6144 + 5069 6138 19061 202 0 4 18 0 1 580 1 0 264 chain 167486 chr6 170805979 + 120086282 120088198 L1PA5 6144 + 3301 5220 11245 208 1 0 888 2 1 233 0 5 22 1 0 154 0 1 407 chain 48510 chr6 170805979 + 120099927 120100524 LTR66 600 + 0 600 30114 401 4 9 72 3 0 62 0 1 55 chain 364470 chr6 170805979 + 120147796 120153122 L1PB1 5432 + 81 5391 5740 36 18 56 238 1 0 110 51 15 65 1 2 96 9 10 121 29 31 547 38 10 201 40 41 65 0 2 75 6 10 115 0 1 212 11 18 321 55 0 339 3 24 49 0 3 254 1 0 34 15 23 87 0 1 32 8 9 7 0 74 66 0 1 4 32 5 111 15 13 4 0 1 100 3 1 9 3 2 57 0 1 104 0 1 443 0 1 16 1 0 178 0 1 93 4 0 151 0 1 29 15 19 36 0 1 239 3 2 9 10 5 19 1 0 9 16 11 9 2 0 55 2 1 14 1 0 41 43 30 19 8 5 14 2 0 24 1 0 21 chain 62003 chr6 170805979 + 120176113 120176856 L1PA8A 6298 + 5525 6270 25867 141 0 2 602 chain 83379 chr6 170805979 + 120244819 120245867 L1PA7 6471 + 5375 6431 20949 59 1 4 183 0 3 514 0 1 142 16 17 133 chain 193484 chr6 170805979 + 120250745 120253362 L1PA8 5853 + 3208 5847 9952 50 0 13 92 2 1 5 0 1 16 4 1 90 0 1 144 0 1 5 1 0 51 4 9 99 0 1 271 0 4 109 4 5 12 0 5 242 0 5 151 0 1 145 0 1 12 10 11 171 8 3 9 0 4 57 0 1 74 15 19 126 3 4 138 6 0 196 2 1 43 2 0 40 1 0 29 17 15 48 2 1 19 1 0 45 23 19 23 chain 3185 chr6 170805979 + 120262568 120262608 L1MA8 2339 + 2003 2042 98027 6 1 0 33 chain 25430 chr6 170805979 + 120354533 120354920 MER41B 635 + 32 397 48583 61 3 2 31 2 3 69 32 0 17 8 18 164 chain 216208 chr6 170805979 + 120363917 120366873 L1PA7 6471 + 2519 6461 9143 123 19 5 37 0 19 194 27 28 188 7 14 60 0 3 343 23 27 36 117 46 8 3 0 33 1 11 103 5 13 160 1 4 25 0 1 97 0 1 58 12 11 43 0 2 230 0 1 316 0 1010 368 1 0 93 0 2 22 0 4 203 chain 66442 chr6 170805979 + 120368031 120368973 L1PA8 5853 + 4865 5815 24843 142 0 2 44 2 11 41 5 6 76 0 1 193 2 1 120 0 1 57 13 12 38 2 0 16 0 1 50 20 18 49 1 0 16 1 0 7 1 2 46 chain 112774 chr6 170805979 + 120418376 120419673 L1PA4 6152 + 3803 5093 16710 832 1 0 241 14 17 149 14 5 46 chain 22013 chr6 170805979 + 120428675 120428941 AluSp 311 + 20 281 53814 110 5 0 151 chain 529667 chr6 170805979 + 120432592 120438693 L1PA5 6144 + 0 6120 1841 120 1 15 9 14 0 129 1 0 331 0 4 340 0 9 463 0 1 12 1 0 317 0 1 66 0 1 349 1 0 2520 0 1 179 0 3 977 3 4 33 1 2 234 chain 9829 chr6 170805979 + 120484665 120484806 Tigger1 2417 + 2211 2355 70765 36 3 6 102 chain 23938 chr6 170805979 + 120510973 120511270 L1P1 4361 + 2892 3189 50883 297 chain 128709 chr6 170805979 + 120522337 120523948 L1P1 4361 + 2 1617 14192 294 15 18 260 1 0 73 7 1 54 15 8 575 0 9 201 0 6 116 chain 8390 chr6 170805979 + 120651205 120651330 L1PA16 3655 + 3469 3590 73925 27 2 1 80 3 0 13 chain 80401 chr6 170805979 + 120678537 120679427 L1PA3long 6157 + 5267 6157 21546 480 1 0 261 0 1 148 chain 6471 chr6 170805979 + 120686620 120686712 5S 121 + 0 90 79440 24 10 8 58 chain 551420 chr6 170805979 + 120688739 120694768 L1PA2 6032 + 0 6032 643 495 1 0 643 4 0 4140 0 8 746 chain 11759 chr6 170805979 + 120711433 120711680 L1M1 2793 + 2412 2661 67290 22 1 0 111 80 83 33 chain 280829 chr6 170805979 + 120726333 120729462 L1PA4 6152 + 3010 6141 7397 419 0 2 1440 1 0 423 0 1 846 chain 550209 chr6 170805979 + 120748371 120754485 L1PA3long 6157 + 19 6149 728 322 1 0 538 0 2 308 0 3 997 0 1 335 0 6 20 0 1 2418 0 3 789 0 1 386 chain 13910 chr6 170805979 + 120772617 120772777 L1P1 4361 + 4169 4328 63719 136 1 0 23 chain 19051 chr6 170805979 + 120798729 120798964 L1PA8A 6298 + 6054 6290 57495 117 0 1 118 chain 527121 chr6 170805979 + 120817928 120823863 L1PA3long 6157 + 0 6157 1951 1093 0 3 32 0 202 235 0 2 540 0 3 204 0 1 253 4 8 170 0 1 335 0 4 283 0 1 2782 0 1 4 chain 43088 chr6 170805979 + 120841109 120841649 MLT2A2 560 + 0 560 32724 203 0 1 121 0 18 26 1 2 189 chain 49612 chr6 170805979 + 120847097 120847666 L1P1 4361 + 3775 4341 29721 376 1 0 154 1 0 23 2 1 12 chain 28547 chr6 170805979 + 120895465 120895861 L1PB3 3668 + 3080 3475 44043 201 17 16 56 0 1 37 1 0 84 chain 268714 chr6 170805979 + 120925236 120929209 HERVH-int 3825 + 0 3825 7743 333 1 0 197 1 0 11 1 0 4 0 1 9 0 3 12 2 1 9 1 0 12 4 0 5 6 0 6 3 1 14 1 0 13 3 0 14 0 39 13 45 0 19 21 0 63 1 0 291 13 14 134 24 9 204 389 40 214 4 31 290 1 15 98 1 0 15 0 3 265 42 43 594 0 1 30 9 11 39 37 247 151 0 1 79 0 2 225 chain 29420 chr6 170805979 + 120930467 120930848 LTR7 482 + 0 473 42707 69 8 46 109 0 1 11 0 53 184 chain 81012 chr6 170805979 + 120931437 120932413 LTR5_Hs 974 + 0 974 21435 9 0 3 81 1 0 108 0 1 59 18 0 277 6 8 278 0 6 40 1 0 18 0 6 80 chain 29313 chr6 170805979 + 120937293 120937619 L1PA5 6144 + 5806 6132 42857 326 chain 17814 chr6 170805979 + 120964546 120964757 L1PA6 6164 + 5949 6160 58872 211 chain 62992 chr6 170805979 + 121011778 121012484 L1PA5 6144 + 5436 6142 25628 706 chain 32199 chr6 170805979 + 121024626 121025014 L1PA5 6144 + 5747 6141 40187 12 9 15 367 chain 14923 chr6 170805979 + 121037894 121038057 L1PA4 6152 + 5980 6143 62363 163 chain 5035 chr6 170805979 + 121038810 121039087 L1ME2z 1083 + 692 919 85492 40 69 55 22 123 87 23 chain 69911 chr6 170805979 + 121042084 121042949 MER11D 897 + 0 897 24014 271 17 18 49 0 8 252 0 23 276 chain 40476 chr6 170805979 + 121048013 121048473 HERVK11D-int 613 + 153 613 34327 135 1 0 223 0 1 101 chain 76371 chr6 170805979 + 121048473 121049347 MER11D 897 + 0 897 22473 584 3 26 287 chain 23890 chr6 170805979 + 121061577 121062140 L1PB1 5432 + 4908 5421 50958 23 19 37 46 0 6 72 65 21 21 1 0 12 1 0 12 15 9 53 2 1 15 1 0 45 1 0 4 0 1 10 31 19 11 29 24 20 1 0 21 1 0 13 1 0 17 chain 163494 chr6 170805979 + 121096277 121098191 L1PA7 6471 + 4540 6455 11512 1074 0 4 457 3 0 56 0 1 148 1 0 175 chain 252462 chr6 170805979 + 121100509 121103368 L1PA5 6144 + 2903 5768 8168 2411 0 6 448 chain 564052 chr6 170805979 + 121162716 121168725 L1HS 6032 + 7 6032 112 730 0 16 5279 chain 10158 chr6 170805979 + 121172147 121172274 THE1B 368 + 243 368 70092 36 1 0 29 1 0 60 chain 54213 chr6 170805979 + 121172278 121172947 HERVL-int 5654 + 4941 5617 28148 38 0 4 235 1 0 232 6 7 41 0 3 116 chain 21747 chr6 170805979 + 121181215 121181570 MSTA 426 + 0 399 54174 66 3 4 26 33 60 50 2 0 30 2 0 55 10 30 78 chain 31601 chr6 170805979 + 121191692 121192123 MLT2A1 477 + 8 477 40667 52 0 1 81 0 1 26 6 10 141 10 9 20 0 1 35 3 35 57 chain 449378 chr6 170805979 + 121192124 121197766 HERVL-int 5654 + 1 5654 4403 45 0 3 195 0 2 132 0 6 27 4 0 6 1 5 56 0 3 319 6 7 59 0 5 256 0 1 149 0 2 71 0 2 368 0 2 160 26 13 167 0 1 36 0 1 493 0 1 48 0 3 607 0 2 98 0 3 56 0 1 292 2 1 420 17 0 396 0 1 60 4 0 82 0 1 577 1 5 183 0 1 223 chain 30837 chr6 170805979 + 121197766 121198171 MLT2A1 477 + 0 400 41277 142 0 1 25 0 4 152 1 0 61 8 0 7 1 0 8 chain 108634 chr6 170805979 + 121212046 121214156 L1PREC2 3366 + 1393 3051 17230 292 31 23 63 0 4 4 324 0 22 0 1 87 0 1 4 2 1 127 0 1 94 6 6 356 111 14 119 0 4 101 1 0 35 2 0 54 1 0 5 120 111 29 36 20 37 8 4 39 chain 35470 chr6 170805979 + 121216443 121216862 HERVL-int 5654 + 0 456 37742 79 0 37 340 chain 27640 chr6 170805979 + 121216862 121217214 HERVL-int 5654 + 2159 2511 45072 352 chain 14239 chr6 170805979 + 121217214 121217376 HERVL-int 5654 + 2518 2680 63279 162 chain 22518 chr6 170805979 + 121218406 121218734 MLT2A1 477 + 0 477 53099 164 9 6 73 36 188 46 chain 203110 chr6 170805979 + 121250141 121252728 L1PA8 5853 + 3247 5846 9603 48 0 1 612 0 4 144 0 4 220 0 3 50 2 1 128 0 22 149 0 1 371 1 4 55 0 8 10 30 0 372 3 1 34 14 19 7 0 1 48 1 0 44 2 0 71 1 0 9 1 0 43 19 18 11 1 0 86 chain 57906 chr6 170805979 + 121252761 121254023 L1PB2 3958 + 2875 3838 26996 49 1 0 24 6 3 25 9 11 40 7 8 55 0 1 173 0 3 11 0 2 8 2 4 17 2 0 9 3 0 32 12 11 13 9 0 52 28 25 49 342 54 25 0 6 32 1 0 62 1 0 30 1 0 44 2 0 22 1 0 63 chain 306843 chr6 170805979 + 121262776 121267076 L1PA8 5853 + 1533 5853 6681 70 0 7 130 10 8 231 30 20 20 1 0 190 0 1 67 12 6 227 0 9 296 0 3 43 10 11 10 2 0 25 0 1 4 1 0 7 6 14 97 2 4 97 0 11 167 1 3 5 2 0 274 1 3 433 27 31 282 2 0 6 8 5 19 11 0 70 0 1 93 4 6 198 4 5 92 11 11 95 0 1 11 4 5 51 2 0 16 11 18 143 1 0 4 0 1 76 5 8 197 0 1 91 1 0 44 2 0 71 1 0 11 7 6 44 2 1 14 5 6 86 1 0 6 chain 509590 chr6 170805979 + 121267152 121273649 L1PA5 6144 + 0 6144 2791 121 5 19 171 0 1 161 18 22 146 28 35 87 1 2 4 1 0 151 0 1 126 0 1 121 9 0 262 4 5 267 1 0 533 8 9 919 1 0 6 2 0 72 0 5 668 5 4 770 0 7 598 1 0 525 381 0 176 4 7 130 3 1 11 chain 494190 chr6 170805979 + 121285528 121291151 L1PA4 6152 + 1 6143 3305 95 0 525 863 15 1 1229 0 1 1401 1 0 240 0 4 129 0 3 1406 1 0 78 1 3 164 chain 104051 chr6 170805979 + 121300462 121301693 L1PA7 6471 + 5175 6466 17815 71 0 58 317 2 1 447 0 3 394 chain 12569 chr6 170805979 + 121311743 121311895 L1PA8 5853 + 5182 5334 65855 152 chain 14834 chr6 170805979 + 121311895 121312079 L1PA8 5853 + 5385 5571 62471 179 0 2 5 chain 7556 chr6 170805979 + 121312089 121312180 L1PA8 5853 + 5589 5678 75971 20 2 0 69 chain 12087 chr6 170805979 + 121312200 121312357 L1PA8 5853 + 5696 5851 66689 44 2 1 19 1 0 91 chain 449267 chr6 170805979 + 121368804 121374725 L1PA7 6471 + 879 6469 4406 189 2 0 385 13 15 256 0 1 234 0 1 410 0 4 127 18 8 10 0 2 61 2 0 24 6 15 20 19 6 126 4 2 455 5 6 115 0 1 119 8 6 44 1 0 7 0 1 75 1 0 8 1 0 224 2 0 1119 1 0 24 1 0 309 12 3 330 1 0 133 0 3 50 298 0 110 9 0 396 24 23 133 chain 4030 chr6 170805979 + 121443616 121443659 U3 216 + 0 43 91238 43 chain 25211 chr6 170805979 + 121490377 121490665 AluSp 311 + 9 296 48925 168 1 0 119 chain 57797 chr6 170805979 + 121493659 121494462 MER4E1 777 + 0 769 27019 25 2 0 240 1 2 101 0 7 72 31 1 55 8 0 22 26 29 11 4 0 27 1 0 177 chain 15915 chr6 170805979 + 121512869 121513177 THE1C 375 + 8 375 61132 100 1 50 24 1 2 13 55 65 85 11 10 18 chain 16644 chr6 170805979 + 121596254 121596574 MER61A 341 + 12 341 60221 6 1 0 138 84 94 30 1 0 4 1 2 55 chain 4030 chr6 170805979 + 121618802 121618848 MER5A 189 + 26 72 91243 46 chain 14489 chr6 170805979 + 121631910 121632080 MER41-int 2638 + 1364 1534 62907 170 chain 113848 chr6 170805979 + 121634443 121635881 HERVL-int 5654 + 4212 5654 16574 835 4 5 144 0 2 27 3 4 53 2 1 145 5 6 220 chain 21763 chr6 170805979 + 121635881 121636191 MLT2A1 477 + 0 318 54155 44 4 6 39 0 1 49 3 4 19 8 12 144 chain 118081 chr6 170805979 + 121643256 121644660 L1PA7 6471 + 5065 6470 15876 292 1 0 10 0 2 199 1 4 49 1 0 485 2 0 235 0 2 5 3 1 121 chain 513266 chr6 170805979 + 121702942 121709087 L1PA6 6164 + 0 6162 2610 396 0 3 61 6 5 15 6 7 300 0 17 642 2 0 106 1 0 269 1 3 140 0 8 362 21 7 1180 1 2 1053 0 1 524 8 6 41 0 1 45 2 1 101 0 4 12 0 4 510 0 1 320 1 0 6 4 0 9 chain 21758 chr6 170805979 + 121720815 121721158 THE1B 368 + 8 368 54157 14 0 1 146 1 0 29 1 0 4 35 56 38 4 0 43 3 4 25 chain 195290 chr6 170805979 + 121760201 121762666 L1P3 4156 + 0 2466 9872 251 1 0 68 2 1 81 3 0 45 0 1 24 0 1 17 1 8 86 9 10 153 0 1 77 3 1 330 1 3 587 7 5 203 1 2 39 0 1 162 0 1 78 2 1 25 1 0 192 4 0 12 chain 22524 chr6 170805979 + 121762681 121762976 L1PA7 6471 + 6183 6461 53086 24 18 1 253 chain 48145 chr6 170805979 + 121797290 121798254 MER11C 1089 + 0 1061 30238 89 0 91 79 0 3 105 0 1 58 9 8 79 287 285 5 0 2 25 5 6 41 0 1 16 4 5 162 chain 20571 chr6 170805979 + 121818844 121819181 THE1A 353 + 0 353 55680 13 2 0 35 16 17 17 13 12 115 19 34 80 0 3 27 chain 24434 chr6 170805979 + 121962146 121962412 AluYg6 310 + 36 302 50123 266 chain 4064 chr6 170805979 + 122023629 122023993 MLT2D 439 + 0 354 90994 29 106 0 8 7 134 15 164 133 35 chain 29854 chr6 170805979 + 122035835 122036189 THE1A 353 + 0 353 42178 111 1 0 242 chain 51517 chr6 170805979 + 122099756 122100467 LTR12D 1347 + 405 1347 29038 129 3 34 17 10 9 120 3 4 16 2 1 129 0 1 56 0 200 226 chain 28752 chr6 170805979 + 122163418 122163722 AluYb8 318 + 6 310 43704 304 chain 28419 chr6 170805979 + 122204540 122204848 AluYb8 318 + 0 305 44236 126 3 0 179 chain 12760 chr6 170805979 + 122211647 122211794 U1 164 + 0 147 65502 147 chain 21289 chr6 170805979 + 122244395 122244628 AluYc 301 + 47 282 54781 73 0 2 160 chain 12716 chr6 170805979 + 122270692 122270848 L1PA6 6164 + 6001 6159 65588 9 0 1 68 0 1 79 chain 120916 chr6 170805979 + 122280400 122281859 LTR12C 1709 + 0 1709 15360 38 0 1 425 8 9 154 4 0 92 0 118 23 0 2 250 1 0 4 4 2 106 0 4 244 0 130 82 1 2 23 chain 112758 chr6 170805979 + 122325623 122326866 L1PA4 6152 + 4015 5261 16711 681 1 4 561 chain 21614 chr6 170805979 + 122357405 122357677 L1PA7 6471 + 6199 6469 54333 260 2 0 10 chain 3167 chr6 170805979 + 122360524 122360560 MER5B 177 - 126 162 98224 36 chain 12425 chr6 170805979 + 122401944 122402157 MER30 238 + 1 237 66101 15 26 33 58 10 26 104 chain 37493 chr6 170805979 + 122454603 122455155 HERVL-int 5654 + 1914 5654 36403 121 0 3165 83 0 3 217 1 0 24 23 44 83 chain 33710 chr6 170805979 + 122455207 122455654 MLT2A1 477 + 0 477 38919 169 4 1 24 3 0 191 4 0 8 5 41 33 0 4 6 chain 22570 chr6 170805979 + 122461423 122461670 L1PA2 6032 + 5784 6031 53017 247 chain 28637 chr6 170805979 + 122519065 122519527 MER1A 529 + 30 529 43889 54 3 0 8 11 51 31 3 5 15 8 11 29 10 11 212 20 14 58 chain 6315 chr6 170805979 + 122523805 122523925 THE1B 368 + 181 306 79949 17 0 3 9 0 4 14 29 27 51 chain 22468 chr6 170805979 + 122555989 122556364 THE1C 375 + 0 375 53166 13 2 0 34 10 7 14 47 49 86 0 3 144 1 0 15 0 1 9 chain 133346 chr6 170805979 + 122573560 122575553 L1PB2 3958 + 1854 3838 13710 4 1 0 110 4 9 57 0 1 12 1 0 310 1 5 120 3 0 6 13 6 33 4 20 86 17 18 34 1 0 66 1 3 170 1 0 38 5 17 151 3 4 140 0 1 32 2 0 56 1 0 7 21 15 53 2 0 13 4 0 83 9 6 78 1 0 58 32 17 48 4 3 10 2 0 20 2 1 63 chain 3388 chr6 170805979 + 122588328 122588366 L1PA4 6152 - 1320 1358 96200 38 chain 22410 chr6 170805979 + 122634098 122634362 L1PA7 6471 + 6199 6464 53257 5 0 1 41 1 0 4 0 1 213 chain 8312 chr6 170805979 + 122683838 122684096 L1MB1 2102 + 1722 2006 74130 16 1 0 9 1 0 7 1 0 68 125 154 30 chain 8728 chr6 170805979 + 122699168 122699263 L1PA2 6032 + 5937 6032 73150 95 chain 14627 chr6 170805979 + 122745339 122745508 7SLRNA 320 + 82 251 62768 169 chain 228955 chr6 170805979 + 122761879 122764546 L1PA5 6144 + 3470 6142 8778 1017 1 5 136 1 0 635 9 9 22 1 0 371 0 3 474 chain 17558 chr6 170805979 + 122791314 122791529 MER57A1 433 + 0 216 59168 142 0 1 73 chain 4519 chr6 170805979 + 122797687 122797739 MER58A 224 + 29 81 88215 52 chain 29596 chr6 170805979 + 122838987 122839372 MLT2A1 477 + 0 385 42489 169 4 1 11 0 1 22 0 3 14 1 0 164 chain 289275 chr6 170805979 + 122840216 122843862 HERVH-int 3825 + 5 3825 7153 159 0 2 46 0 11 157 0 2 147 68 2 39 1 0 10 1 0 9 4 0 14 10 4 12 1 0 11 46 1 71 9 28 49 1 0 7 0 23 75 0 4 335 15 0 67 0 1 33 0 2 272 0 4 83 4 31 631 0 5 103 1 0 665 8 218 72 39 39 143 3 8 225 chain 40843 chr6 170805979 + 122845117 122845567 LTR7 482 + 0 482 34066 225 0 1 38 0 31 187 chain 6941 chr6 170805979 + 122846407 122846538 LTR57 402 + 272 401 77806 74 35 33 22 chain 9056 chr6 170805979 + 122850308 122850436 LTR9B 643 + 86 225 72430 19 0 8 88 4 7 17 chain 6499 chr6 170805979 + 122860019 122860099 Tigger4b 360 + 76 156 79356 80 chain 43539 chr6 170805979 + 122884209 122884749 L1PA7 6471 + 1030 1569 32422 382 1 0 157 chain 115889 chr6 170805979 + 122913064 122914658 THE1C-int 1605 + 0 1605 16257 12 13 12 316 0 2 98 15 22 62 13 12 218 7 1 270 0 1 4 1 0 40 0 1 221 1 0 36 0 9 7 0 1 22 1 0 4 0 1 29 6 7 165 6 5 27 chain 54538 chr6 170805979 + 122934473 122935079 L1PA2 6032 + 5423 6029 28032 307 1 0 156 0 1 142 chain 259050 chr6 170805979 + 122956500 122960144 L1PBa 3878 + 101 3748 7995 36 26 22 4 1 0 42 4 0 4 0 3 12 12 10 107 7 0 180 1 0 86 16 12 8 0 2 129 17 17 125 34 35 55 2 0 251 9 12 369 15 8 174 0 6 212 0 5 6 16 22 320 1 2 101 0 3 219 0 4 34 7 8 217 0 1 149 0 1 100 9 6 274 0 1 191 9 12 16 1 0 23 0 1 4 3 0 6 chain 334685 chr6 170805979 + 122985876 122990045 L1P3 4156 + 0 4139 6146 251 38 36 35 1 0 81 15 0 482 0 1 382 12 8 82 2 0 65 0 2 837 6 7 99 2 1 329 2 1 1155 0 1 106 0 1 39 7 0 106 2 0 6 1 0 26 chain 17450 chr6 170805979 + 123049745 123049947 L1PA4 6152 + 5937 6141 59293 70 0 2 132 chain 36612 chr6 170805979 + 123111725 123112225 LTR12_ 688 + 0 681 37011 144 0 24 158 1 0 19 17 39 58 0 136 103 chain 22010 chr6 170805979 + 123124239 123124560 THE1B 368 + 0 317 53820 15 2 0 14 8 13 130 2 1 21 11 5 118 chain 56760 chr6 170805979 + 123129368 123130040 L1PA4 6152 + 5492 6151 27337 363 12 0 146 1 2 4 1 0 134 1 0 10 chain 45252 chr6 170805979 + 123137050 123138232 THE1C-int 1605 + 2 741 31447 12 3 1 34 1 0 67 2 5 35 0 54 23 6 0 5 11 9 29 523 0 51 0 6 86 0 1 25 0 7 164 1 21 104 chain 56973 chr6 170805979 + 123181622 123182229 L1HS 6032 + 1495 2102 27276 607 chain 438498 chr6 170805979 + 123182766 123188629 L1PA8 5853 + 50 5852 4601 22 5 2 21 50 14 55 0 4 78 0 1 55 18 6 188 3 13 226 21 6 378 11 0 15 6 5 464 0 3 293 7 14 113 1 0 246 0 1 208 0 4 14 0 1 88 1 0 224 0 1 40 0 3 32 2 1 25 5 2 99 0 1 53 5 12 52 0 1 36 0 1 114 0 1 93 8 7 353 28 10 274 0 1 310 3 0 246 0 4 426 3 1 73 0 2 455 1 0 4 0 1 16 1 0 48 2 0 13 0 1 51 28 26 32 12 11 19 1 0 89 chain 3751 chr6 170805979 + 123202663 123202750 LTR12C 1709 + 650 698 93232 33 39 0 15 chain 40231 chr6 170805979 + 123230062 123230531 L1PA5 6144 + 5660 6128 34497 151 1 0 317 chain 259732 chr6 170805979 + 123244012 123247584 L1P2 5180 + 903 4480 7977 15 0 4 106 0 3 5 11 9 4 1 0 252 0 1 29 66 67 48 1 0 7 1 0 5 1 2 44 22 23 679 0 2 130 1 0 103 3 7 9 1 0 211 1 2 116 0 4 424 0 1 4 11 15 288 13 9 113 8 1 50 20 12 460 15 21 5 2 0 287 chain 232305 chr6 170805979 + 123283062 123286676 L1PB1 5432 + 2061 5430 8683 438 4 0 50 0 20 47 10 9 193 0 1 14 2 1 9 1 0 6 256 40 96 6 9 4 1 0 8 0 1 50 1 0 509 0 2 160 2 4 124 29 0 13 0 1 127 4 5 171 6 10 259 1 7 6 6 0 159 1 11 4 0 1 245 7 8 103 0 3 5 11 8 76 42 37 23 1 0 9 1 0 11 5 1 9 2 0 51 1 0 17 1 0 41 44 31 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 14 1 0 5 1 0 7 chain 53518 chr6 170805979 + 123444175 123446391 L1PA3long 6157 + 3936 6152 28390 1080 1 0 195 0 1 940 chain 400990 chr6 170805979 + 123448781 123454260 L1PB1 5432 + 12 5413 5137 12 1 0 120 0 1 246 1 0 4 4 3 4 0 2 79 0 1 4 1 0 105 4 8 7 0 1 443 1 3 23 1 0 289 60 51 261 4 0 4 9 0 592 5 6 80 22 23 67 0 1 41 5 0 210 0 1 138 1 0 22 0 3 489 0 1 374 10 8 657 4 0 232 4 0 184 26 29 164 7 10 88 25 0 11 5 0 24 1 0 9 16 11 9 2 0 53 4 3 13 2 1 44 1 0 15 1 0 4 18 8 19 8 5 11 7 5 22 1 0 14 8 7 13 1 0 9 chain 539545 chr6 170805979 + 123472074 123478068 L1PA3long 6157 + 5 6157 1369 147 0 1 514 11 0 69 1 0 41 1 129 1301 0 2 211 0 17 147 0 1 427 0 18 2181 0 1 601 0 1 266 0 1 76 chain 20435 chr6 170805979 + 123514773 123515084 L1PA8 5853 + 5536 5853 55845 28 1 0 44 2 0 25 0 1 21 3 7 4 1 0 12 2 1 15 2 1 43 5 4 18 2 1 55 1 10 27 chain 29539 chr6 170805979 + 123556843 123557243 LTR7 482 + 0 470 42563 17 0 1 51 4 42 109 0 1 33 9 38 73 1 2 103 chain 238370 chr6 170805979 + 123557264 123560254 HERVH-int 3825 + 0 3565 8509 333 1 0 31 15 16 93 0 4 10 1 0 34 10 9 15 4 3 10 0 208 12 1 0 88 0 7 251 0 1 61 8 1 23 1 2 16 15 0 242 1 0 309 0 1 164 0 8 134 4 9 208 0 1 24 0 1 298 0 1 243 0 2 98 0 362 232 chain 29456 chr6 170805979 + 123561937 123562341 LTR7 482 + 0 474 42660 50 27 65 109 0 1 5 0 31 213 chain 3048 chr6 170805979 + 123602164 123602200 L1PB2 3958 + 3782 3818 99324 36 chain 14778 chr6 170805979 + 123612258 123612419 L1PA4 6152 + 5990 6151 62558 161 chain 11455 chr6 170805979 + 123625527 123625729 L1MA3 4352 + 4138 4332 67823 16 0 2 79 4 0 25 8 6 16 2 1 5 1 0 26 1 0 14 1 0 4 chain 3569 chr6 170805979 + 123771631 123771678 MER4D 903 + 848 894 94667 24 1 0 22 chain 23152 chr6 170805979 + 123793482 123793781 MLT2A1 477 + 0 384 52139 75 0 86 8 4 1 9 0 1 24 0 1 179 chain 408880 chr6 170805979 + 123794051 123799151 HERVL-int 5654 + 0 5644 5034 470 1 3 158 40 557 330 0 18 1076 2 3 848 0 1 5 0 2 510 0 1 20 1 0 62 0 8 704 0 27 92 5 8 234 0 1 37 1 2 48 42 6 122 1 0 291 chain 30249 chr6 170805979 + 123799160 123799546 MLT2A1 477 + 0 385 41807 169 4 1 9 0 1 24 1 2 179 chain 11145 chr6 170805979 + 123824589 123824727 L1PA8 5853 + 5711 5847 68346 29 2 1 19 1 0 87 chain 40640 chr6 170805979 + 123923504 123923951 L1PA3long 6157 + 5710 6157 34194 447 chain 22675 chr6 170805979 + 123975852 123976218 THE1B 368 + 0 368 52859 103 11 0 70 1 0 17 35 50 66 7 6 56 chain 23748 chr6 170805979 + 124004580 124004852 L1PA6 6164 + 5874 6146 51198 272 chain 19709 chr6 170805979 + 124030088 124030363 MER1A 529 + 253 529 56772 58 0 1 50 0 2 90 15 13 62 chain 6516 chr6 170805979 + 124099762 124099844 MER20 218 + 123 205 79286 82 chain 11674 chr6 170805979 + 124138811 124139062 L1PB1 5432 + 5191 5422 67439 28 1 0 60 2 1 10 29 18 18 12 9 11 9 7 17 1 0 22 1 0 30 chain 6320 chr6 170805979 + 124161704 124161845 L1PA16 3655 + 3500 3619 79929 71 9 6 7 2 0 7 21 5 7 1 0 16 chain 45263 chr6 170805979 + 124221059 124221561 L1PA3long 6157 + 5650 6152 31441 502 chain 357415 chr6 170805979 + 124238553 124243048 L1PA7 6471 + 15 6470 5827 124 0 2065 282 7 22 42 0 1 73 3 9 69 0 5 24 1 2 125 6 13 539 0 1 906 0 2 121 0 2 761 1 2 55 160 0 213 0 5 143 0 3 395 0 1 79 0 1 85 4 8 277 chain 18466 chr6 170805979 + 124273183 124273533 THE1D 372 + 5 372 58136 6 0 5 36 8 22 8 7 0 4 6 0 82 16 26 16 13 14 51 13 14 51 1 0 32 chain 14308 chr6 170805979 + 124321297 124321481 L1PA7 6471 + 6287 6470 63187 32 1 2 143 2 0 6 chain 17187 chr6 170805979 + 124330793 124331041 MER1B 344 + 95 336 59586 18 8 0 107 4 0 46 10 15 55 chain 32434 chr6 170805979 + 124348613 124349000 L1PA4 6152 + 7 394 40006 387 chain 3748 chr6 170805979 + 124417385 124417433 L1MDa 1598 + 672 720 93261 48 chain 24595 chr6 170805979 + 124426683 124427042 THE1B 368 + 0 368 49872 169 1 0 29 35 45 125 chain 45477 chr6 170805979 + 124465095 124465641 L1PA7 6471 + 5923 6470 31318 352 0 1 44 0 1 134 4 3 12 chain 18494 chr6 170805979 + 124540714 124540936 MER47A 366 + 72 294 58112 222 chain 26632 chr6 170805979 + 124560098 124560443 THE1C 375 + 0 348 46790 71 0 1 113 1 2 42 1 2 117 chain 35441 chr6 170805979 + 124564114 124564699 LTR12 884 + 5 883 37758 20 1 0 179 16 108 12 0 25 27 50 0 65 18 4 29 7 12 67 0 236 94 chain 122400 chr6 170805979 + 124569780 124571352 THE1A-int 1579 + 0 1579 15124 12 13 15 262 8 7 405 0 15 267 8 0 419 1 0 177 chain 45232 chr6 170805979 + 124580468 124581157 L1MA3 4352 + 47 712 31458 109 1 0 18 0 3 58 3 0 10 16 19 42 2 0 6 0 1 26 0 1 78 48 16 12 0 5 96 0 1 164 chain 26093 chr6 170805979 + 124664550 124664822 AluYa5 310 + 38 310 47584 272 chain 31571 chr6 170805979 + 124686751 124687828 MLT2A1 477 + 0 477 40686 141 1 2 4 0 1 21 1 5 150 1 0 61 4 0 14 3 0 9 5 0 9 614 21 39 chain 27442 chr6 170805979 + 124721134 124721421 AluYd8 298 + 0 287 45652 287 chain 548717 chr6 170805979 + 124725696 124731722 L1PA2 6032 + 2 6030 824 72 0 1 182 1 0 549 0 1 1761 0 1 3095 0 2 353 2 0 11 chain 46494 chr6 170805979 + 124737503 124738083 THE1C-int 1605 + 0 594 30849 13 4 11 421 0 7 124 0 1 13 1 0 4 chain 554752 chr6 170805979 + 124804504 124810636 L1PA3long 6157 + 0 6152 429 573 0 4 612 0 3 778 0 1 1278 0 6 623 0 1 303 0 1 141 0 1 1210 0 1 559 0 2 55 chain 12873 chr6 170805979 + 124817164 124817355 MER30 238 + 31 236 65299 75 4 0 11 1 22 60 4 1 36 chain 27693 chr6 170805979 + 124838238 124838609 THE1C 375 + 0 375 45327 142 0 4 39 1 2 51 1 0 5 6 7 100 1 0 25 chain 59125 chr6 170805979 + 124855349 124856027 L1P1 4361 + 3666 4341 26624 485 1 0 154 1 0 23 2 1 12 chain 24916 chr6 170805979 + 124883996 124884294 AluSc 308 + 10 308 49405 298 chain 30081 chr6 170805979 + 124890406 124890840 LTR7Y 441 + 0 441 41973 103 9 0 57 56 72 209 chain 301347 chr6 170805979 + 124890840 124896074 HERVH-int 3825 + 0 3825 6792 532 5 0 38 65 0 10 1 0 24 28 0 15 0 37 42 3 2 50 0 1 12 0 2 13 0 3 109 1594 0 795 4 31 330 1 0 404 1 2 668 8 218 254 3 8 225 chain 3202 chr6 170805979 + 124891415 124891449 HERVH-int 3825 + 450 484 89898 34 chain 2669 chr6 170805979 + 124891449 124891479 HERVH-int 3825 + 540 570 102612 30 chain 2259 chr6 170805979 + 124891516 124891543 HERVH-int 3825 + 656 683 95142 27 chain 135522 chr6 170805979 + 124891791 124893381 LTR12C 1709 + 0 1709 13487 650 0 119 68 1 0 274 1 0 6 2 0 107 0 4 481 chain 30163 chr6 170805979 + 124897329 124897763 LTR7Y 441 + 0 441 41878 103 12 3 54 56 72 209 chain 10345 chr6 170805979 + 124904126 124904247 THE1D 372 + 211 332 69708 121 chain 13399 chr6 170805979 + 125035349 125035491 L1P1 4361 + 1777 1919 64476 142 chain 29400 chr6 170805979 + 125036502 125036867 L1PA8 5853 + 4825 5202 42736 181 1 8 68 0 2 87 0 3 28 chain 119625 chr6 170805979 + 125039282 125040773 L1P3 4156 + 2636 4136 15589 264 0 2 483 3 10 99 1 0 25 1 0 6 0 1 82 0 1 63 0 1 205 0 2 227 2 0 7 2 1 21 chain 11890 chr6 170805979 + 125075049 125075255 MER30 238 + 0 238 67029 15 15 22 64 2 0 5 4 24 69 12 19 20 chain 208805 chr6 170805979 + 125123609 125127910 L1PBa1 4058 + 10 2832 9389 26 1 0 12 36 33 182 0 3 162 2 0 120 6 4 4 0 1 58 16 15 24 11 8 18 1 2 61 0 1 359 26 10 39 0 8 301 3 0 141 2 1 7 0 1 51 1 0 388 1446 0 125 4 13 15 19 0 75 4 5 31 1 2 149 7 0 367 chain 114491 chr6 170805979 + 125125671 125127113 LTR12C 1709 + 0 1709 16477 277 4 0 185 8 7 32 8 12 135 0 278 186 1 0 5 3 1 106 11 4 370 0 1 28 1 0 82 chain 4738 chr6 170805979 + 125128139 125128197 MER57B1 401 + 0 58 87026 58 chain 26459 chr6 170805979 + 125144436 125144790 MLT2A1 477 + 0 383 47042 171 3 0 15 1 3 39 0 24 96 0 6 29 chain 3497 chr6 170805979 + 125144910 125144949 MER39 703 + 654 693 95267 39 chain 411460 chr6 170805979 + 125279945 125285324 L1PA7 6471 + 3 6470 5012 393 5 7 37 11 12 193 0 21 11 4 5 62 2 3 216 3 15 772 0 5 62 1 5 338 325 10 350 0 2 118 3 5 46 7 6 73 0 1350 451 1 0 7 0 1 229 0 2 145 1 0 204 4 2 35 1 0 37 0 6 382 1 0 849 chain 86816 chr6 170805979 + 125288564 125289494 L1HS 6032 + 5102 6032 20257 930 chain 294545 chr6 170805979 + 125318947 125322076 L1HS 6032 + 2903 6032 6995 3129 chain 535509 chr6 170805979 + 125395924 125402242 L1PA5 6144 + 3 6144 1593 643 184 0 545 0 3 1119 2 1 548 0 1 819 1 0 51 12 17 5 1 0 902 0 1 174 2 0 84 0 1 389 0 1 451 0 1 51 0 1 66 10 8 259 chain 11548 chr6 170805979 + 125409532 125409716 THE1B 368 + 117 306 67668 52 25 26 4 0 1 14 0 4 12 1 0 76 chain 34966 chr6 170805979 + 125418179 125418574 L1PA7 6471 + 5784 6177 38043 88 2 0 305 chain 20332 chr6 170805979 + 125464500 125464844 THE1B 368 + 0 368 55970 44 29 44 84 1 0 26 34 45 64 1 0 61 chain 122188 chr6 170805979 + 125464844 125466414 THE1B-int 1605 + 0 1600 15162 12 0 1 310 1 0 107 0 25 12 9 10 97 1 4 911 0 1 110 chain 24617 chr6 170805979 + 125467506 125467840 THE1A 353 + 0 352 49843 109 2 1 72 1 0 4 0 1 15 1 0 14 7 27 109 chain 34951 chr6 170805979 + 125590389 125590898 MER75 514 + 14 513 38054 17 28 31 39 0 1 85 15 0 238 1 0 71 0 2 15 chain 6101 chr6 170805979 + 125598963 125599061 MLT1C 463 + 5 107 80722 19 0 3 26 14 15 39 chain 144454 chr6 170805979 + 125607367 125611109 L1PA5 6144 + 4354 6143 12736 96 1954 0 1435 0 1 257 chain 15919 chr6 170805979 + 125609232 125609417 L1PA5 6144 + 4250 4447 61130 92 0 12 93 chain 64666 chr6 170805979 + 125635752 125636520 L1PA7 6471 + 5679 6450 25274 24 0 1 135 4 5 13 0 1 592 chain 121645 chr6 170805979 + 125644270 125645697 LTR12C 1709 + 0 1709 15236 526 1 0 124 0 278 184 1 0 5 3 1 12 0 4 90 0 4 481 chain 12873 chr6 170805979 + 125738683 125738831 L1PA5 6144 + 5984 6132 65298 148 chain 135315 chr6 170805979 + 125770166 125771668 SVA_C 1631 + 0 1631 13508 477 0 2 358 0 134 47 1 0 24 0 1 574 7 0 14 chain 105349 chr6 170805979 + 125847592 125848804 L1PA6 6164 + 4939 6160 17636 6 0 3 364 0 4 30 0 1 665 4 5 143 chain 60496 chr6 170805979 + 125938979 125939723 MER4E 760 + 0 753 26234 93 0 1 275 8 14 51 1 0 233 0 3 83 chain 14400 chr6 170805979 + 125951123 125951376 MER67B 652 + 359 617 63036 15 1 0 21 0 1 92 23 29 10 1 0 4 4 5 33 13 12 36 chain 22285 chr6 170805979 + 126058584 126058853 L1P3 4156 + 3464 3734 53429 105 0 1 164 chain 23964 chr6 170805979 + 126075301 126075688 MSTA 426 + 0 426 50848 108 20 48 42 1 0 9 8 0 7 26 26 56 0 20 110 chain 8749 chr6 170805979 + 126082931 126083094 L1MA9 1812 + 1240 1398 73103 5 1 0 73 27 24 9 1 0 4 0 1 35 1 0 7 chain 23483 chr6 170805979 + 126121919 126122274 THE1B 368 + 0 368 51614 105 8 9 55 1 0 21 7 10 7 0 7 10 17 20 124 chain 19793 chr6 170805979 + 126147828 126148059 L1PA7 6471 + 6242 6470 56690 67 1 0 152 2 0 9 chain 228418 chr6 170805979 + 126241340 126243934 L1PA4 6152 + 3534 6143 8789 472 7 18 641 0 1 1113 0 1 133 0 2 90 1 0 33 0 1 104 chain 28112 chr6 170805979 + 126268979 126269288 AluYa5 310 + 0 306 44693 97 3 1 34 1 0 174 chain 134039 chr6 170805979 + 126283162 126284744 L1PA7 6471 + 3398 4987 13651 91 0 2 6 1 0 109 0 1 203 1 5 94 0 1 84 0 2 7 5 0 679 0 1 32 0 1 262 0 1 8 chain 557808 chr6 170805979 + 126326598 126332742 L1PA3long 6157 + 0 6157 257 6 1 0 572 0 1 2671 0 1 647 0 6 389 0 2 1015 0 4 843 chain 118986 chr6 170805979 + 126415899 126417460 THE1B-int 1605 + 0 1600 15708 164 0 1 95 3 0 143 1 2 25 1 26 106 9 12 90 5 6 497 21 21 197 0 4 78 0 5 16 0 1 42 0 1 68 chain 29165 chr6 170805979 + 126418752 126419086 L1PA5 6144 + 5805 6137 43103 321 2 0 11 chain 9405 chr6 170805979 + 126442357 126442469 L1PB1 5432 + 4457 4569 71693 112 chain 40919 chr6 170805979 + 126466733 126467394 L1PREC2 3366 + 2316 2951 34019 187 9 0 76 4 8 93 0 1 24 1 2 4 1 0 41 2 0 54 1 0 44 1 0 4 3 0 11 58 45 12 2 0 29 chain 37657 chr6 170805979 + 126504866 126505355 MER9a3 513 + 0 513 36301 17 0 2 160 4 5 74 1 0 60 0 21 95 0 1 78 chain 380415 chr6 170805979 + 126506251 126511636 L1PA8 5853 + 393 5815 5476 130 58 39 32 19 23 47 1 3 7 0 1 53 12 1 6 0 7 16 0 1 5 2 1 13 2 5 31 5 6 273 15 16 32 1 0 201 6 8 154 2 4 46 0 1 16 0 21 120 3 4 485 1 0 537 2 3 122 15 8 48 10 20 17 4 13 22 0 1 98 0 2 109 1 0 10 1 2 180 9 10 131 0 1 124 5 0 218 1 2 165 3 0 5 1 4 48 6 5 13 15 16 109 3 6 107 0 2 5 13 13 164 0 5 193 0 1 47 0 2 209 7 9 557 1 0 45 2 0 69 25 24 33 11 10 15 2 1 54 chain 42740 chr6 170805979 + 126545437 126546000 PRIMA4_LTR 623 + 0 615 32923 87 0 1 4 0 1 95 4 0 34 3 4 67 0 57 34 4 0 231 chain 6956 chr6 170805979 + 126556651 126556821 MER5B 177 + 5 177 77754 50 70 71 35 0 1 15 chain 476232 chr6 170805979 + 126558726 126564579 L1PA7 6471 + 19 6461 3716 324 1 560 25 0 1 182 0 1 16 0 1 270 6 1 194 0 1 38 4 6 485 0 1 12 3 4 86 0 1 409 10 11 622 3 7 272 0 4 283 10 8 141 21 12 6 0 7 175 0 1 332 0 7 130 15 23 686 1 0 256 1 4 49 0 1 24 0 2 761 chain 89989 chr6 170805979 + 126585448 126586451 L1PA4 6152 + 5136 6140 19687 513 0 1 490 chain 7495 chr6 170805979 + 126655627 126655737 THE1B 368 + 259 368 76142 47 14 13 49 chain 535011 chr6 170805979 + 126673551 126679569 L1PA3long 6157 + 1 6157 1619 152 1 2 92 4 0 534 0 128 2468 0 4 191 4 11 111 0 1 1075 1 0 365 0 1 392 0 2 472 5 7 143 3 0 5 chain 3113 chr6 170805979 + 126692163 126692407 L1MB8 1703 + 1478 1658 98667 34 191 127 19 chain 533668 chr6 170805979 + 126726285 126732395 L1PA5 6144 + 3 6137 1673 132 11 25 540 1 2 617 0 3 589 0 1 269 1 2 573 0 1 729 0 4 247 2 0 1363 0 1 1036 chain 88376 chr6 170805979 + 126839726 126840768 L1PA7 6471 + 2483 3537 19971 138 0 12 904 chain 31272 chr6 170805979 + 126848845 126849274 LTR7B 505 + 0 503 40918 105 0 10 69 6 68 28 0 2 40 0 1 42 1 0 23 0 1 52 14 13 49 chain 297409 chr6 170805979 + 126849276 126852777 HERVH-int 3825 + 0 3824 6905 489 0 57 24 1 0 10 1 0 24 28 0 15 0 37 41 1 0 59 0 1 7 0 2 12 0 3 902 7 33 299 0 10 1045 9 11 39 0 210 234 1 2 26 3 8 224 chain 30447 chr6 170805979 + 126854025 126854445 LTR7B 505 + 0 494 41628 105 0 10 69 6 68 28 0 2 40 0 1 42 1 0 23 0 1 52 14 13 40 chain 106804 chr6 170805979 + 126891962 126893559 THE1C-int 1605 + 0 1585 17458 12 20 25 285 5 11 21 11 12 40 39 46 54 1 0 21 6 5 121 8 0 11 0 7 7 15 16 65 8 2 58 0 1 113 0 1 97 0 1 4 1 0 254 1 0 52 5 6 18 10 0 26 24 7 140 16 18 28 chain 4939 chr6 170805979 + 126929156 126929218 MER5A1 166 + 5 73 85940 35 0 6 27 chain 367108 chr6 170805979 + 126983656 126988665 L1PA7 6471 + 4 6470 5710 89 416 1880 18 1 2 30 2 19 94 0 1 154 0 1 34 5 0 194 0 2 13 7 6 8 0 1 548 0 1 317 0 1 59 0 1 26 0 1 117 0 4 383 0 1 316 0 1 107 0 1 136 2 1 7 0 1 30 0 1 345 5 4 18 0 1 353 0 1 527 9 10 89 3 4 146 41 2 360 chain 514655 chr6 170805979 + 127043252 127049363 L1PA6 6164 + 0 6154 2534 1194 0 3 57 1 0 305 0 1 29 9 12 436 1 0 81 0 1 1064 1 2 4 0 1 530 5 7 381 1 12 1199 0 6 276 0 1 480 6 21 51 chain 7323 chr6 170805979 + 127050916 127051019 L1PA16 3655 + 1888 1991 76589 16 0 1 4 1 0 82 chain 5353 chr6 170805979 + 127053429 127053493 MLT1E3 631 + 520 584 83944 64 chain 505891 chr6 170805979 + 127228186 127234327 L1PA7 6471 + 0 6461 2935 48 4 1 425 1 0 107 0 2 88 0 47 9 65 18 1896 5 0 192 2 272 367 0 6 71 0 4 270 1 0 6 3 0 780 0 1 365 0 20 413 0 8 206 2 0 76 0 2 506 0 21 204 0 1 29 chain 133167 chr6 170805979 + 127236895 127238375 L1PA3long 6157 + 4677 6157 13728 1480 chain 505795 chr6 170805979 + 127255066 127261128 L1PA6 6164 + 0 6153 2938 250 1 2 42 12 13 158 1 0 322 0 17 124 0 4 164 7 6 342 0 16 216 0 1 35 1 0 330 1 0 292 2 0 262 0 19 649 0 3 433 6 9 36 0 1 124 1 0 495 0 4 365 1 2 35 10 28 198 1 0 60 0 1 109 0 5 386 0 1 137 0 2 294 1 2 159 chain 59828 chr6 170805979 + 127336966 127337705 MER4E 760 + 0 747 26423 262 0 1 5 1 0 101 0 2 8 0 4 51 1 0 66 0 2 27 2 0 138 0 3 77 chain 7501 chr6 170805979 + 127346025 127346180 L1MA6 2487 + 1925 2096 76125 7 0 14 57 1 0 32 33 0 12 0 36 13 chain 32717 chr6 170805979 + 127361167 127362149 THE1D-int 1627 + 0 439 39742 15 0 2 21 1 0 179 545 1 221 chain 9742 chr6 170805979 + 127376614 127376735 MER41A 554 + 433 554 70952 121 chain 40304 chr6 170805979 + 127380548 127381075 LTR12C 1709 + 1190 1709 34445 13 0 1 20 11 4 313 1 0 81 4 3 84 chain 41670 chr6 170805979 + 127397313 127397899 LTR14B 630 + 48 630 33578 246 0 25 74 0 9 11 42 12 8 8 0 197 chain 6684 chr6 170805979 + 127430910 127431083 L1MD2 1676 + 827 993 78685 31 69 61 44 1 2 28 chain 42293 chr6 170805979 + 127481731 127482260 MER41A 554 + 0 544 33195 96 0 1 108 5 16 137 0 3 16 0 1 160 1 0 6 chain 11768 chr6 170805979 + 127531570 127531748 L1PA8 5853 + 5688 5853 67269 52 2 1 21 1 0 84 11 0 7 chain 547503 chr6 170805979 + 127593292 127599292 L1PA2 6032 + 12 6022 894 730 1 0 86 0 4 288 7 9 2014 0 2 408 0 2 580 0 1 1886 chain 86357 chr6 170805979 + 127617615 127618546 L1HS 6032 + 5098 6029 20349 931 chain 10434 chr6 170805979 + 127660579 127660705 L1PA6 6164 + 5631 5757 69550 126 chain 29778 chr6 170805979 + 127660715 127661097 L1PA6 6164 + 5779 6161 42260 237 8 7 10 0 1 127 chain 12583 chr6 170805979 + 127679662 127679820 L1PA7 6471 + 6310 6465 65824 148 3 0 7 chain 61281 chr6 170805979 + 127770923 127771639 L1PA6 6164 + 4154 4879 26039 168 1 3 42 0 4 95 0 3 410 chain 135968 chr6 170805979 + 127782761 127784395 L1PA7 6471 + 4832 6469 13438 719 0 4 138 2 1 653 0 1 109 2 1 11 chain 70872 chr6 170805979 + 127788845 127789712 L1P3 4156 + 3270 4139 23786 305 0 5 527 2 0 7 2 1 24 chain 27585 chr6 170805979 + 127800532 127800921 MLT2A1 477 + 5 477 45475 158 11 9 11 0 1 18 0 1 93 4 5 50 7 89 37 chain 155978 chr6 170805979 + 127800921 127802861 HERVL-int 5654 + 0 1929 12004 28 6 0 119 0 2 63 0 1 72 21 0 54 4 13 64 0 11 221 8 0 766 0 1 89 0 1 215 2 1 208 chain 3615 chr6 170805979 + 127857673 127857747 MER5A1 166 + 41 127 94317 23 6 19 23 7 6 15 chain 533017 chr6 170805979 + 127926207 127932339 L1PA5 6144 + 0 6139 1709 36 2 0 485 3 0 6 0 4 279 0 1 408 1 0 280 0 1 495 16 9 708 0 1 159 15 5 293 1 0 344 0 22 1115 14 14 361 0 1 974 0 1 137 chain 32125 chr6 170805979 + 127966978 127967404 MLT2A1 477 + 2 477 40250 70 0 4 66 0 1 26 1 5 141 1 2 6 1 0 61 0 40 53 chain 9471 chr6 170805979 + 128078483 128078795 MER44A 345 + 36 345 71555 17 24 10 46 29 49 26 1 0 5 3 0 45 96 91 20 chain 22067 chr6 170805979 + 128158150 128158411 L1PA5 6144 + 5874 6135 53738 261 chain 6671 chr6 170805979 + 128191290 128191379 L1MA7 2200 + 1890 1977 78727 58 3 1 28 chain 17918 chr6 170805979 + 128198410 128198630 L1PA7 6471 + 6248 6467 58733 61 1 0 158 chain 149643 chr6 170805979 + 128202729 128204764 L1PA11 4918 + 2495 4507 12378 49 1 0 142 2 1 29 1 0 201 20 1 79 27 34 23 10 1 276 0 4 201 1 2 122 1 0 241 0 1 124 0 1 152 0 5 143 1 0 62 6 5 12 5 0 68 3 1 12 2 1 19 chain 19828 chr6 170805979 + 128227888 128228128 L1PA7 6471 + 6230 6470 56643 240 chain 2439 chr6 170805979 + 128234952 128234994 L1MA4 2864 + 2749 2792 103997 18 5 6 19 chain 99694 chr6 170805979 + 128272059 128273197 L1PA5 6144 + 4834 5977 18335 1031 1 6 106 chain 14372 chr6 170805979 + 128273202 128273369 L1PA5 6144 + 5977 6144 63083 167 chain 408457 chr6 170805979 + 128296325 128300872 L1PA3long 6157 + 1593 6157 5039 1726 5 0 99 0 2 277 0 10 894 1 0 782 0 1 411 0 12 345 2 0 5 chain 80405 chr6 170805979 + 128325271 128326262 L1PA7 6471 + 5407 6413 21544 214 0 3 77 1 2 138 0 1 445 0 3 17 9 16 90 chain 15224 chr6 170805979 + 128355626 128355798 L1PA4 6152 + 5971 6143 62009 172 chain 21085 chr6 170805979 + 128409635 128409960 THE1B 368 + 0 368 55024 44 0 15 69 10 38 10 2 1 19 22 23 149 chain 5847 chr6 170805979 + 128556488 128556564 MADE1 96 + 2 95 81705 28 0 17 48 chain 6993 chr6 170805979 + 128584403 128584489 HY3 101 + 14 100 77626 86 chain 277531 chr6 170805979 + 128588373 128592384 L1MA1 4479 + 228 4190 7503 14 1 0 37 2 0 26 4 9 44 1 0 147 0 1 6 0 3 69 1 3 156 14 10 31 4 0 336 0 3 51 1 5 53 2 0 7 1 3 130 2 0 31 6 9 30 1 0 235 0 2 288 0 1 123 1 0 84 1 0 299 0 3 28 9 0 45 12 11 42 2 0 64 2 1 103 2 0 8 0 1 24 1 0 62 5 0 92 1 0 27 2 0 130 0 1 42 2 0 19 4 0 58 2 3 13 1 0 14 4 0 71 1 6 46 3 0 5 0 1 124 2 0 197 1 0 24 2 0 5 17 16 41 26 25 14 2 0 22 1 0 84 1 0 6 3 0 126 2 1 21 9 7 35 1 0 9 1 0 4 4 1 16 8 0 18 chain 30369 chr6 170805979 + 128622979 128623500 L1PB 1623 + 1094 1574 41699 4 1 0 147 3 2 38 0 1 23 10 0 137 1 0 7 2 1 26 11 8 14 1 0 13 1 0 9 54 31 19 chain 6174 chr6 170805979 + 128660958 128661033 MER30 238 + 28 104 80438 71 0 1 4 chain 63072 chr6 170805979 + 128661035 128661822 L1PA8A 6298 + 5293 6287 25609 70 0 1 64 0 1 31 0 206 176 13 12 300 0 1 34 1 0 98 chain 7140 chr6 170805979 + 128661883 128661969 MER30B 195 + 95 181 77131 86 chain 59982 chr6 170805979 + 128677939 128678622 L1PA4 6152 + 4650 5338 26380 91 0 1 562 0 4 30 chain 20069 chr6 170805979 + 128755476 128755704 L1PA4 6152 + 5923 6151 56294 228 chain 25143 chr6 170805979 + 128760266 128760609 THE1A 353 + 0 341 49048 106 16 14 82 1 0 25 3 4 110 chain 3525 chr6 170805979 + 128793018 128793059 L1PA13 3608 - 690 732 95066 20 0 1 21 chain 536464 chr6 170805979 + 128829468 128835615 L1PA5 6144 + 0 6137 1535 112 10 8 260 0 1 44 9 7 613 0 1 1000 6 7 1550 0 1 1389 0 1 255 25 14 874 chain 21201 chr6 170805979 + 128868470 128868695 AluYb8 318 + 93 318 54881 225 chain 8864 chr6 170805979 + 128878754 128879072 L1MC1 2226 + 1888 2185 72839 29 2 7 34 9 10 12 3 0 11 3 1 55 143 121 17 chain 81266 chr6 170805979 + 128996317 128997282 L1PA7 6471 + 5496 6458 21374 18 0 1 104 1 5 646 4 0 41 4 0 147 chain 567677 chr6 170805979 + 128998385 129004416 L1HS 6032 + 0 6032 26 74 0 1 5957 chain 8491 chr6 170805979 + 129079200 129079326 MER44A 345 + 96 229 73693 23 2 0 23 0 8 6 0 1 13 0 1 20 1 0 38 chain 74922 chr6 170805979 + 129080546 129081402 L1PA5 6144 + 5287 6143 22862 856 chain 21368 chr6 170805979 + 129175590 129175851 L1PA7 6471 + 6209 6470 54679 261 chain 72930 chr6 170805979 + 129219173 129219979 L1PA3long 6157 + 5343 6157 23327 665 1 0 26 0 9 114 chain 18964 chr6 170805979 + 129265649 129265869 L1PA7 6471 + 6244 6464 57583 220 chain 46415 chr6 170805979 + 129387266 129387975 L1PA8 5853 + 5054 5762 30875 39 0 1 294 5 6 24 1 5 138 14 11 38 2 0 46 1 3 19 37 35 27 2 1 4 1 0 17 chain 5669 chr6 170805979 + 129458747 129458813 Tigger3c 601 + 451 517 82479 66 chain 30005 chr6 170805979 + 129510040 129510427 L1MA3 4352 + 2151 2549 42048 116 0 8 38 7 6 47 0 4 179 chain 114690 chr6 170805979 + 129518073 129519356 L1PA3long 6157 + 4870 6157 16433 440 0 4 499 0 4 215 4 0 125 chain 3485 chr6 170805979 + 129533445 129533519 MER51A 677 + 178 232 95345 15 26 6 33 chain 158163 chr6 170805979 + 129558569 129560327 L1PA4 6152 + 4392 6151 11863 605 0 1 1153 chain 529169 chr6 170805979 + 129568680 129575115 L1PA7 6471 + 0 6470 1871 130 0 1 282 2 1 382 1 17 437 3 0 294 1 2 213 1 0 56 7 0 172 3 4 43 0 1 265 0 12 36 0 1 283 13 0 41 25 30 186 0 4 124 0 3 400 1 0 82 0 1 19 5 1 56 0 5 443 0 1 396 0 1 803 0 4 78 0 2 308 1 4 74 0 2 142 3 4 624 chain 5821 chr6 170805979 + 129736335 129736415 MLT2A1 477 + 7 476 81819 26 0 389 54 chain 6159 chr6 170805979 + 129745047 129745124 MADE1 96 + 0 96 80499 30 0 19 47 chain 6531 chr6 170805979 + 129747737 129747814 MADE1 96 + 0 93 79228 29 0 16 48 chain 118085 chr6 170805979 + 129802610 129804174 THE1B-int 1605 + 5 1600 15874 20 0 3 6 3 0 292 0 6 91 3 28 210 3 35 8 31 0 536 0 1 102 0 1 226 4 1 29 chain 506888 chr6 170805979 + 129835434 129841581 L1PA6 6164 + 0 6162 2898 428 0 1 20 8 0 117 4 3 22 0 1 195 0 17 372 8 4 360 2 3 102 0 1 686 2 6 470 13 0 277 3 6 92 1 2 55 0 4 380 0 1 1387 0 1 249 0 2 50 1 5 412 0 1 222 0 2 67 1 2 131 4 0 6 chain 14160 chr6 170805979 + 129885594 129885762 L1PA6 6164 + 5994 6162 63367 168 chain 3243 chr6 170805979 + 129959148 129959183 MER52D 1964 + 1116 1151 97550 35 chain 3115 chr6 170805979 + 130122562 130122597 MIR 256 + 201 236 98653 35 chain 17093 chr6 170805979 + 130149259 130149567 L1PA15 4387 + 4047 4351 59703 57 1 0 25 2 1 53 16 22 12 1 0 39 17 14 19 0 3 22 3 1 12 6 1 23 chain 3326 chr6 170805979 + 130159815 130159854 L1ME3F 937 + 311 350 96801 39 chain 314341 chr6 170805979 + 130192712 130196565 HERVH-int 3825 + 0 3825 6520 530 1 0 11 1 0 4 0 1 24 2 1 9 1 0 10 4 0 13 7 1 14 1 0 12 27 1 24 23 1 42 2 1 80 1 0 60 2 5 392 15 0 195 9 0 44 1 0 210 4 31 370 8 13 485 4 6 495 0 19 245 0 3 246 0 2 225 chain 28235 chr6 170805979 + 130197819 130198222 LTR7 482 + 0 482 44509 69 8 46 109 0 1 29 2 0 9 1 32 12 1 0 5 1 12 41 1 2 115 chain 11453 chr6 170805979 + 130211135 130211276 MER4B 649 + 234 390 67828 110 0 15 31 chain 3830 chr6 170805979 + 130232001 130232055 MER3 215 + 130 190 92642 39 1 7 14 chain 399405 chr6 170805979 + 130262590 130267503 Harlequin-int 5206 + 289 5206 5165 11 0 2 5 2 0 108 14 13 49 14 6 43 0 1 20 5 7 163 0 2 292 1 0 169 0 1 108 12 11 102 0 10 161 0 1 4 1 0 471 0 2 924 0 1 700 2 0 12 1 2 421 2 1 732 5 6 329 6 3 24 chain 48561 chr6 170805979 + 130329459 130330082 L1PA8 5853 + 5238 5853 30102 326 2 1 43 2 0 70 2 1 8 2 1 52 2 1 19 5 4 84 1 0 5 chain 50449 chr6 170805979 + 130335617 130336171 L1PA3long 6157 + 5600 6154 29399 554 chain 465931 chr6 170805979 + 130346091 130351425 L1PA4 6152 + 6 5339 3964 451 8 0 279 1 0 361 1 4 2216 0 1 89 2 10 265 1 0 952 0 1 65 6 2 637 chain 522856 chr6 170805979 + 130475515 130481492 L1PA4 6152 + 3 5976 2143 454 0 1 118 1 0 122 7 0 331 2 1 72 0 3 108 0 1 964 1 0 2067 1 0 712 0 1 848 0 1 169 chain 15637 chr6 170805979 + 130482011 130482282 L1PA15 4387 + 4112 4366 61486 18 1 0 55 1 0 22 4 0 10 1 0 50 6 3 46 2 0 7 10 6 26 1 0 11 chain 79085 chr6 170805979 + 130503518 130504619 L1MA2 4263 + 2472 3584 21847 129 0 2 41 6 3 4 0 1 123 3 2 53 0 1 71 0 3 51 14 15 147 1 3 17 11 17 116 1 2 194 0 5 66 6 0 29 1 0 17 chain 17787 chr6 170805979 + 130530261 130530475 L1PBa 3878 + 2253 2467 58909 214 chain 395738 chr6 170805979 + 130540347 130544758 L1PA4 6152 + 1745 6152 5223 2611 0 4 403 0 1 129 7 0 64 0 1 1189 3 0 5 chain 222527 chr6 170805979 + 130569890 130572566 L1PA7 6471 + 3755 6457 8968 58 0 4 19 1 0 746 0 3 346 0 4 260 9 13 111 0 1 302 2 0 17 14 10 183 0 17 608 chain 50512 chr6 170805979 + 130618701 130619339 PABL_B 668 + 0 651 29377 350 5 4 124 14 28 145 chain 2961 chr6 170805979 + 130629039 130629074 MADE1 96 - 60 96 100276 5 0 1 30 chain 33057 chr6 170805979 + 130630794 130631242 MLT2A1 477 + 0 477 39471 170 4 1 8 0 1 24 0 1 128 4 0 52 4 0 11 10 44 27 0 4 6 chain 311456 chr6 170805979 + 130636159 130640463 L1PA8 5853 + 1899 5853 6585 126 0 1 81 5 6 542 6 8 119 21 0 19 0 1 68 2 1 15 1 0 96 0 1 121 16 6 104 6 0 130 3 4 242 5 6 310 2 0 42 329 9 62 0 1 81 0 2 237 1 0 284 0 1 184 0 1 36 0 1 158 1 4 49 0 1 20 1 2 481 1 0 46 2 0 70 13 11 51 22 20 93 chain 23880 chr6 170805979 + 130694993 130695359 THE1D 372 + 0 372 50981 68 0 1 34 4 5 54 0 1 6 15 18 7 2 0 16 13 14 19 0 1 128 chain 526541 chr6 170805979 + 130701315 130707758 L1PA7 6471 + 1 6462 1974 4 1 0 397 5 0 384 3 0 5 0 3 25 1 0 4 0 1 75 1 2 152 11 0 7 0 11 9 0 3 140 0 1 76 0 1 259 0 1 36 0 3 330 0 1 764 0 1 278 0 1 121 0 4 390 6 7 462 3 4 84 0 1 720 1 0 262 0 1 590 5 8 655 0 1 177 chain 2721 chr6 170805979 + 130708196 130708231 L1MA9 1812 + 1184 1218 102176 4 1 0 30 chain 36131 chr6 170805979 + 130711843 130712283 LTR7 482 + 0 473 37321 261 0 31 127 12 14 40 chain 23134 chr6 170805979 + 130718197 130718544 L1PA11 4918 + 4172 4504 52168 12 0 5 124 5 6 18 8 0 56 2 1 13 9 0 67 2 0 15 1 0 15 chain 3625 chr6 170805979 + 130727816 130727855 L1P3 4156 + 1 40 94214 39 chain 51312 chr6 170805979 + 130727873 130728498 L1PA7 6471 + 4140 4768 29122 243 0 1 98 1 0 4 1 2 9 0 1 157 0 1 112 chain 19779 chr6 170805979 + 130728499 130728755 L1PA7 6471 + 4768 5019 56700 115 6 1 32 0 1 38 1 0 64 chain 50883 chr6 170805979 + 130728763 130729361 L1PA7 6471 + 5024 5621 29246 332 1 0 265 chain 70816 chr6 170805979 + 130729362 130730192 L1PA7 6471 + 5621 6456 23804 24 0 1 18 0 1 38 0 1 432 0 1 176 7 8 135 chain 8579 chr6 170805979 + 130738627 130738812 L1MA8 2339 + 1934 2117 73495 22 2 0 18 5 6 27 1 2 57 39 37 14 chain 44223 chr6 170805979 + 130773482 130774028 MLT2A2 560 + 4 560 31997 179 1 0 223 0 11 143 chain 11670 chr6 170805979 + 130782292 130782655 MSTA 426 + 39 426 67441 57 206 230 100 chain 134202 chr6 170805979 + 130801828 130803324 SVA_D 2077 + 222 2077 13629 503 0 3 33 3 0 126 0 183 160 0 176 671 chain 409096 chr6 170805979 + 130817038 130822739 L1PB1 5432 + 77 5420 5033 379 4 3 17 0 1 75 4 2 170 1 0 4 1 2 240 2 3 103 1 0 171 0 4 152 10 0 142 0 4 43 0 11 419 5 7 186 0 3 145 0 1 406 0 1 25 0 7 33 6 0 6 2 0 153 0 4 733 2 0 434 14 8 179 0 2 258 302 19 54 32 0 19 0 2 105 5 4 148 5 0 86 3 4 49 27 11 24 1 0 9 1 0 11 9 13 49 2 1 15 1 0 18 44 26 16 3 0 6 16 6 16 16 13 9 2 0 24 1 0 22 0 3 9 1 0 16 chain 39921 chr6 170805979 + 130830571 130831099 MER41A 554 + 19 552 34721 156 0 1 9 11 7 69 0 3 71 12 10 124 0 5 39 0 2 37 chain 19597 chr6 170805979 + 130909526 130909746 L1PA7 6471 + 4449 4669 56908 220 chain 151231 chr6 170805979 + 130909746 130911533 L1PA7 6471 + 4677 6466 12272 620 1 2 39 0 1 282 5 8 175 1 0 415 10 16 133 2 0 87 6 0 11 chain 2682 chr6 170805979 + 130951774 130951993 MLT1I 406 + 113 332 102440 19 173 173 27 chain 19579 chr6 170805979 + 130953434 130953674 L1PA5 6144 + 5901 6143 56923 229 1 3 10 chain 26410 chr6 170805979 + 130973521 130973863 MER4A1 472 + 0 372 47106 89 3 0 137 20 53 93 chain 29935 chr6 170805979 + 130994711 130995662 MER4A1 472 + 0 468 42111 7 0 2 220 10 12 21 6 1 17 524 42 146 chain 2997 chr6 170805979 + 131074822 131074856 MLT1F2 592 + 494 528 99869 34 chain 2447 chr6 170805979 + 131078324 131078350 L1PB1 5432 + 5194 5220 103927 26 chain 9163 chr6 170805979 + 131078352 131078574 L1PB1 5432 + 5221 5421 72200 15 1 0 45 1 0 15 1 0 4 2 0 11 9 0 8 22 19 8 2 0 15 1 2 7 1 0 21 1 0 12 5 4 9 1 0 5 chain 2207 chr6 170805979 + 131085947 131086319 L1PA13 3608 + 113 461 29543 25 3 0 26 2 1 13 3 0 23 27 17 66 10 7 122 1 0 15 1 0 17 2 0 16 chain 525333 chr6 170805979 + 131086336 131092461 L1PA5 6144 + 0 6141 2031 1065 0 1 99 24 15 405 0 1 352 0 1 375 0 1 26 1 0 836 0 1 325 1 2 176 0 1 89 0 1 305 0 1 80 1 2 790 0 1 459 0 1 684 0 15 21 1 0 10 chain 3364 chr6 170805979 + 131093816 131094383 L1PA13 3608 + 1198 1772 29543 59 0 5 132 1 0 7 0 1 68 0 1 279 7 8 14 chain 76976 chr6 170805979 + 131201919 131202769 L1PA3long 6157 + 5305 6157 22323 145 0 1 551 0 1 154 chain 38691 chr6 170805979 + 131295356 131295806 LTR7 482 + 0 482 35566 265 0 31 11 0 1 174 chain 289770 chr6 170805979 + 131295808 131299487 HERVH-int 3825 + 0 3825 7134 181 6 8 10 3 1 11 0 11 239 121 0 73 9 4 32 1 0 10 1 0 24 6 18 9 3 0 8 21 0 11 6 26 21 1 0 16 16 16 26 0 1 7 0 2 13 0 3 671 0 2 227 8 35 290 0 4 336 0 4 770 8 218 373 0 3 111 chain 3283 chr6 170805979 + 131296334 131296379 HERVH-int 3825 + 476 522 86624 36 0 1 9 chain 38826 chr6 170805979 + 131300746 131301196 LTR7 482 + 0 482 35485 265 0 31 9 0 1 176 chain 30774 chr6 170805979 + 131302067 131302811 MLT2A1 477 + 0 477 41326 142 9 10 17 2 6 15 1 0 134 1 0 58 318 48 47 chain 17237 chr6 170805979 + 131303653 131304035 MSTA 426 + 8 426 59542 81 41 65 52 88 104 5 0 2 89 6 0 20 chain 39714 chr6 170805979 + 131323295 131323746 LTR7 482 + 0 482 34882 261 0 31 190 chain 291725 chr6 170805979 + 131323748 131327431 HERVH-int 3825 + 0 3825 7081 532 5 0 38 2 1 9 1 0 9 4 0 14 7 1 15 1 0 12 26 0 18 24 3 4 1 0 41 1 0 28 68 5 49 1 0 291 0 1 58 0 4 125 0 17 410 4 31 295 0 10 1049 9 11 39 8 218 262 0 2 223 chain 39880 chr6 170805979 + 131328687 131329137 LTR7 482 + 0 482 34754 242 0 1 22 0 31 186 chain 67260 chr6 170805979 + 131331309 131332268 MER41-int 2638 + 1692 2636 24634 17 1 2 110 5 4 5 0 1 45 11 9 82 22 5 95 0 1 24 6 4 253 1 0 59 8 13 215 chain 39656 chr6 170805979 + 131338799 131339250 LTR7 482 + 0 482 34921 246 1 32 204 chain 296271 chr6 170805979 + 131339252 131342907 HERVH-int 3825 + 0 3825 6941 532 68 0 38 65 0 10 1 0 24 6 56 21 0 1 15 1 0 52 0 1 14 0 2 12 0 3 253 0 1 648 13 33 110 0 1 188 0 10 343 0 4 748 8 218 260 0 2 225 chain 4861 chr6 170805979 + 131339784 131339847 HERVH-int 3825 + 471 532 82650 17 2 0 44 chain 2692 chr6 170805979 + 131339926 131339954 HERVH-int 3825 + 542 570 102406 28 chain 39031 chr6 170805979 + 131344113 131344564 LTR7 482 + 0 482 35331 266 0 31 185 chain 4318 chr6 170805979 + 131376302 131376358 MER53 195 - 27 83 89378 56 chain 34390 chr6 170805979 + 131402515 131402898 L1PA3long 6157 + 5769 6157 38438 235 1 6 147 chain 27470 chr6 170805979 + 131402924 131403345 LTR7B 505 + 0 491 45611 105 0 10 60 0 38 12 21 16 8 0 31 41 1 2 42 1 0 23 0 1 40 4 0 12 14 13 37 chain 289977 chr6 170805979 + 131403359 131406851 HERVH-int 3825 + 0 3825 7128 488 0 1 21 30 25 35 1 0 10 1 0 23 0 92 61 0 1 6 0 2 13 0 3 900 8 35 1354 9 11 39 37 247 231 0 2 225 chain 30773 chr6 170805979 + 131408113 131408542 LTR7B 505 + 0 503 41328 107 1 11 57 0 38 12 3 27 26 0 2 42 0 1 42 1 0 23 0 1 52 14 13 49 chain 20262 chr6 170805979 + 131410608 131410949 THE1C 375 + 0 345 56061 64 21 22 15 20 21 13 0 4 37 0 2 11 15 9 36 0 2 109 chain 25181 chr6 170805979 + 131433370 131433738 MSTA 426 + 42 419 48986 150 10 9 5 3 0 86 16 25 40 9 13 49 chain 140095 chr6 170805979 + 131444269 131445898 L1PA7 6471 + 4843 6467 13089 860 2 0 94 0 1 663 4 0 6 chain 28202 chr6 170805979 + 131473356 131473887 L1PA11 4918 + 4136 4629 44561 71 0 1 22 0 4 15 0 1 4 1 0 82 4 0 57 2 1 13 2 0 6 3 0 62 7 5 9 1 0 19 4 0 9 31 22 15 1 0 13 60 44 18 chain 45214 chr6 170805979 + 131509270 131509816 MER41A 554 + 0 554 31473 87 0 1 127 0 3 8 0 1 127 0 3 197 chain 26948 chr6 170805979 + 131532256 131532565 L1PA6 6164 + 5853 6162 46343 309 chain 526059 chr6 170805979 + 131538256 131545041 L1PA7 6471 + 0 6466 1995 238 5 0 165 1 0 9 1 0 369 2 1 374 0 1 440 0 3 159 0 2 25 0 4 684 0 2 43 0 2 116 13 0 223 0 8 234 0 2 128 1 5 6 4 0 237 8 6 58 0 4 97 0 2 21 332 0 339 2 3 975 1 0 250 0 3 93 0 1 215 0 1 73 1 0 30 0 1 566 1 0 79 0 2 167 chain 4139 chr6 170805979 + 131552091 131552138 MER5A 189 + 124 171 90515 47 chain 3919 chr6 170805979 + 131556601 131556647 L1MA5A 2387 + 2236 2282 91977 46 chain 12470 chr6 170805979 + 131623528 131623862 THE1C 375 + 2 358 66035 70 163 186 90 2 1 9 chain 12687 chr6 170805979 + 131635429 131635613 PABL_B 668 + 2 193 65643 18 1 9 92 10 8 34 0 1 29 chain 23171 chr6 170805979 + 131712934 131713316 THE1B 368 + 0 368 52119 64 35 18 87 1 0 23 2 0 9 5 13 14 14 12 128 chain 10866 chr6 170805979 + 131768608 131768810 MSTA 426 + 184 400 68745 30 7 5 10 38 54 117 chain 65812 chr6 170805979 + 131857078 131857805 L1PA2 6032 + 5297 6024 24999 569 5 0 9 0 5 144 chain 38124 chr6 170805979 + 131901549 131902003 LTR7 482 + 0 482 35970 230 0 31 24 1 0 144 9 7 46 chain 298405 chr6 170805979 + 131902005 131905720 HERVH-int 3825 + 0 3825 6876 212 4 15 305 67 0 38 1 0 10 1 0 9 4 0 14 7 1 15 1 0 11 4 1 14 9 7 4 1 0 41 1 0 28 64 5 38 0 15 451 15 0 348 12 12 91 4 31 418 0 3 983 0 210 268 0 2 111 0 3 111 chain 38368 chr6 170805979 + 131906968 131907417 LTR7 482 + 0 482 35799 264 0 31 124 12 14 49 chain 4036 chr6 170805979 + 131918084 131918141 L1MA1 4479 + 4107 4162 91175 35 1 0 9 1 0 11 chain 24632 chr6 170805979 + 131919319 131919654 L1PA13 3608 + 3163 3487 49824 110 2 0 63 1 0 55 1 0 5 2 0 47 2 0 5 2 0 20 1 0 19 chain 4203 chr6 170805979 + 131928310 131928385 ORSL-2b 485 + 329 403 90105 39 16 15 20 chain 3950 chr6 170805979 + 131930908 131930956 MER3 215 + 35 83 91758 48 chain 5005 chr6 170805979 + 131932786 131932845 MER3 215 + 24 83 85637 59 chain 30007 chr6 170805979 + 131940283 131940673 L1PA8 5853 + 5469 5853 42042 95 1 0 45 2 0 68 3 2 8 2 1 72 1 0 93 chain 6178 chr6 170805979 + 131969625 131969695 L1PA8 5853 + 5783 5853 80431 70 chain 42367 chr6 170805979 + 132003500 132004502 MER41A 554 + 0 554 33150 126 457 5 338 10 14 71 chain 36807 chr6 170805979 + 132028608 132029097 L1PA16 3655 + 3078 3575 36877 99 1 5 20 0 4 85 2 0 18 0 1 103 5 6 156 chain 55738 chr6 170805979 + 132162607 132163343 L1PA8 5853 + 5128 5853 27650 436 1 0 37 9 7 74 1 0 5 2 1 52 2 1 19 2 1 82 4 0 10 chain 44621 chr6 170805979 + 132178473 132178969 MER9a1 513 + 16 513 31781 156 1 2 339 chain 305625 chr6 170805979 + 132181538 132186160 L1PB1 5432 + 641 5422 6706 122 5 6 113 55 14 61 14 15 360 2 0 5 0 2 51 23 29 202 0 7 114 21 18 151 12 16 144 0 139 141 42 44 101 1 0 4 2 4 31 0 1 5 7 6 240 5 8 22 0 1 8 5 4 12 1 0 104 10 5 49 6 7 97 8 0 58 8 1 285 3 0 28 2 0 12 0 5 210 2 3 15 38 14 27 0 1 198 4 0 224 0 1 32 3 2 60 35 20 326 3 0 36 6 5 137 5 4 127 0 2 118 186 292 23 2 1 21 1 0 12 1 0 18 chain 27840 chr6 170805979 + 132224365 132224730 THE1C 375 + 9 375 45121 116 3 0 15 1 5 230 chain 484801 chr6 170805979 + 132304963 132310957 L1PA8A 6298 + 266 6291 3538 43 14 13 6 2 0 78 2 0 17 1 0 9 1 0 3 1 0 75 1 0 367 0 12 210 0 4 26 3 0 11 5 6 221 0 1 66 0 1 348 1 2 20 0 1 500 8 0 82 0 2 110 0 1 464 2 0 77 0 1 64 0 3 295 6 1 28 1 2 45 1 0 55 0 3 332 0 1 299 0 1 811 0 10 47 0 8 132 0 1 308 1 4 73 0 2 5 0 2 243 2 0 6 0 1 466 chain 15506 chr6 170805979 + 132330160 132330522 MER1B 344 + 0 331 61641 13 4 18 50 73 33 47 30 26 29 4 0 52 9 13 30 1 0 20 chain 56587 chr6 170805979 + 132408057 132408712 L1PA4 6152 + 5490 6143 27394 508 7 0 8 0 7 71 2 0 59 chain 27974 chr6 170805979 + 132487290 132487642 L1PA8 5853 + 5506 5853 44910 15 0 1 42 1 0 44 2 0 71 1 0 14 1 0 8 0 1 42 1 0 16 1 0 93 chain 2492 chr6 170805979 + 132504061 132504123 MADE1 96 + 0 38 103683 7 0 1 16 25 0 14 chain 28214 chr6 170805979 + 132516666 132517035 MLT2A1 477 + 0 383 44548 140 0 1 28 1 5 89 7 13 65 0 3 39 chain 18974 chr6 170805979 + 132529952 132530312 MER57-int 2662 + 40 395 57579 30 77 59 51 0 8 52 5 15 58 6 1 81 chain 30678 chr6 170805979 + 132531910 132532313 THE1B-int 1605 + 1210 1599 41401 201 15 0 106 0 1 81 chain 86541 chr6 170805979 + 132533856 132534971 MER11A 1151 + 7 1151 20316 169 8 0 23 2 0 93 10 9 142 0 1 94 0 1 7 14 13 125 1 2 57 0 4 56 1 0 15 7 41 66 0 1 225 chain 55300 chr6 170805979 + 132587821 132588440 L1PA5 6144 + 5514 6135 27775 526 0 2 93 chain 514651 chr6 170805979 + 132634829 132641306 L1PA7 6471 + 1 6467 2535 4 1 0 90 0 19 4 19 0 25 27 28 232 0 2 822 0 7 154 4 0 6 0 5 359 0 1 351 0 1 30 1 2 125 0 1 370 8 9 243 10 8 299 1 0 286 0 3 62 0 4 125 42 13 140 15 0 173 1 0 253 0 1 227 0 1 121 0 2 62 0 4 97 0 3 174 1 0 103 11 12 173 1 2 92 0 1 268 1 0 24 0 4 653 1 0 186 chain 3245 chr6 170805979 + 132681160 132681506 MLT1F2 592 + 138 543 97528 23 3 4 19 275 333 26 chain 3166 chr6 170805979 + 132716726 132716763 L1MCa 1829 + 455 492 98226 37 chain 5141 chr6 170805979 + 132747223 132747330 L1MA3 4352 + 4254 4352 84952 6 2 0 22 1 0 6 1 0 21 5 4 15 6 2 22 chain 30572 chr6 170805979 + 132806658 132807052 MLT2A1 477 + 0 391 41507 168 5 2 11 0 1 8 0 1 13 0 1 180 3 0 6 chain 10889 chr6 170805979 + 132891147 132891296 L1PA8 5853 + 5706 5853 68715 34 2 1 18 2 1 93 chain 17937 chr6 170805979 + 132904235 132904442 L1PA7 6471 + 6255 6461 58712 68 1 0 138 chain 21264 chr6 170805979 + 133124917 133125202 L1PA5 6144 + 5864 6144 54809 213 2 0 40 2 1 14 3 1 11 chain 21130 chr6 170805979 + 133177186 133177422 L1PA4 6152 + 5903 6146 54972 224 0 7 12 chain 29512 chr6 170805979 + 133204486 133204793 AluYa5 310 + 1 308 42590 307 chain 4010 chr6 170805979 + 133365269 133365319 LTR40a 516 + 466 516 91378 50 chain 6299 chr6 170805979 + 133494855 133494984 L1MA3 4352 + 4190 4311 79997 42 14 10 18 2 0 22 13 11 18 chain 4000 chr6 170805979 + 133518428 133518479 MADE1 96 + 45 96 91453 51 chain 314735 chr6 170805979 + 133518705 133522128 L1PA2 6032 + 2574 6032 6514 648 0 2 616 0 11 795 0 22 1364 chain 3512 chr6 170805979 + 133547676 133547717 MADE1 96 + 55 96 95154 41 chain 517075 chr6 170805979 + 133614314 133620743 L1PA7 6471 + 1 6467 2417 340 1 0 62 0 2 342 0 15 196 6 18 361 0 1 130 14 20 264 1 0 6 5 6 13 2 0 219 1 10 37 0 1 588 38 0 454 10 14 377 0 2 71 0 4 338 0 1 4 1 0 92 1 13 403 18 23 301 0 1 254 6 7 630 1 4 85 3 2 53 4 1 45 0 2 216 0 2 436 chain 28998 chr6 170805979 + 133649447 133649937 MLT2A1 477 + 0 477 43323 168 5 2 9 0 1 24 0 1 76 0 2 7 1 0 5 1 2 85 81 68 16 1 0 11 chain 302226 chr6 170805979 + 133649977 133653226 L1HS 6032 + 2781 6030 6777 3249 chain 422715 chr6 170805979 + 133654076 133659489 HERVL-int 5654 + 29 5274 4846 23 0 1 4 5 3 43 3 2 164 0 3 425 8 9 64 0 1 99 0 5 137 1 2 26 1 0 338 4 3 237 4 3 14 0 1 121 163 0 507 0 1 4 1 0 243 0 1 30 1 0 891 0 8 179 0 2 343 3 5 784 1 2 43 21 0 12 0 11 72 0 3 287 1 2 38 20 1 48 chain 12797 chr6 170805979 + 133655799 133655960 HERVL-int 5654 + 3543 3705 64298 25 4 5 132 chain 24270 chr6 170805979 + 133662032 133662390 THE1B 368 + 7 368 50389 55 7 8 50 0 1 48 6 5 22 7 1 105 3 1 6 0 10 49 chain 136122 chr6 170805979 + 133664333 133666203 SVA_F 1814 + 335 1814 13427 547 100 0 42 128 0 24 0 15 217 177 0 7 1 0 627 chain 5710 chr6 170805979 + 133664888 133664980 SVA_F 1814 + 888 995 39126 48 0 1 10 1 15 33 chain 7944 chr6 170805979 + 133665022 133665150 SVA_F 1814 + 1037 1115 39126 54 50 0 24 chain 2260 chr6 170805979 + 133665076 133665101 SVA_F 1814 + 1267 1291 62944 7 1 0 17 chain 8291 chr6 170805979 + 133665427 133665563 SVA_F 1814 + 1040 1176 49656 136 chain 4691 chr6 170805979 + 133666209 133666379 L1PA17 2846 + 2526 2693 87320 7 1 0 28 98 96 36 chain 28262 chr6 170805979 + 133691750 133692104 THE1B 368 + 0 368 44464 44 0 15 109 1 0 32 2 0 62 0 1 44 0 1 60 chain 29755 chr6 170805979 + 133698653 133699063 LOR1b 457 + 42 457 42299 4 0 1 98 1 0 39 8 17 128 8 1 54 0 3 70 chain 41006 chr6 170805979 + 133750813 133751413 L1PA8 5853 + 5297 5853 33966 267 1 0 37 62 16 37 0 3 5 0 5 12 3 2 6 2 0 52 4 3 18 1 0 93 chain 37774 chr6 170805979 + 133866798 133867292 MLT2A1 477 + 0 477 36225 169 4 1 12 0 1 20 0 1 179 0 2 22 18 0 70 chain 23160 chr6 170805979 + 133867753 133868072 LTR70 1284 + 960 1274 52128 195 4 1 37 1 0 43 1 0 38 chain 81174 chr6 170805979 + 133870071 133870970 L1PA3long 6157 + 5258 6157 21395 899 chain 510772 chr6 170805979 + 133930653 133936859 L1PA7 6471 + 264 6464 2728 57 3 4 85 1 2 195 2 0 6 0 2 322 9 7 201 3 5 521 24 20 70 0 1 32 11 12 683 1 0 151 0 1 248 12 16 195 0 4 445 3 7 620 0 3 446 1 0 711 8 9 110 33 0 89 0 9 61 0 3 847 chain 7042 chr6 170805979 + 134001141 134001303 L1PB1 5432 + 5287 5427 77465 12 25 11 17 11 8 11 2 0 58 1 0 18 2 0 5 chain 32570 chr6 170805979 + 134066902 134067342 MLT2A1 477 + 0 477 39897 167 8 5 7 0 1 24 0 1 75 1 3 102 4 0 8 7 47 37 chain 28753 chr6 170805979 + 134071069 134071446 THE1C 375 + 0 375 43701 104 13 12 234 1 0 25 chain 41181 chr6 170805979 + 134085548 134086096 MLT2A2 560 + 0 559 33851 180 1 0 165 0 1 42 1 2 6 1 0 10 7 18 135 chain 27060 chr6 170805979 + 134122550 134122911 Tigger3b 1229 + 771 1128 46182 68 4 0 76 0 1 16 0 1 9 2 0 186 chain 20394 chr6 170805979 + 134133591 134133852 7SLRNA 320 + 19 281 55892 84 9 10 168 chain 24350 chr6 170805979 + 134150469 134150816 THE1A 353 + 0 353 50247 56 23 29 24 2 1 214 0 1 28 chain 126483 chr6 170805979 + 134150816 134152388 THE1A-int 1579 + 0 1570 14486 169 2 1 5 0 1 252 0 1 620 4 3 86 7 9 180 1 0 78 3 0 5 0 1 155 1 0 4 chain 9422 chr6 170805979 + 134159151 134159268 MER2 342 + 136 253 71648 117 chain 7669 chr6 170805979 + 134261421 134261625 L1MC1 2226 + 1993 2173 75707 54 46 36 17 6 4 18 24 13 17 1 0 21 chain 8402 chr6 170805979 + 134283092 134283191 HY3 101 + 1 100 73897 99 chain 4441 chr6 170805979 + 134290369 134290422 MER51E 476 + 324 377 88652 53 chain 20972 chr6 170805979 + 134319773 134320066 THE1C 375 + 0 374 55171 54 1 81 47 1 2 6 1 0 141 0 1 4 2 3 11 1 0 24 chain 87957 chr6 170805979 + 134355350 134356404 MER11C 1089 + 0 1073 20056 40 1 0 155 0 2 41 8 17 58 0 4 371 0 4 45 0 1 335 chain 35458 chr6 170805979 + 134386580 134387005 L1PA6 6164 + 5735 6160 37748 425 chain 28549 chr6 170805979 + 134508742 134509167 MSTA 426 + 7 426 44037 90 6 7 44 4 8 107 5 0 30 6 9 55 9 0 69 chain 24928 chr6 170805979 + 134558556 134558927 THE1C 375 + 0 375 49386 61 2 0 5 4 6 62 1 5 43 12 13 155 1 0 25 chain 343554 chr6 170805979 + 134568410 134572979 L1PB1 5432 + 815 5404 6001 12 0 1 150 1 0 43 0 1 100 0 1 105 0 2 165 1 0 7 2 0 5 25 11 357 2 0 6 0 17 71 0 9 513 0 13 47 0 1 43 3 0 28 9 10 44 0 5 46 5 8 49 0 1 51 2 1 135 0 9 324 0 1 526 0 3 185 0 5 19 12 11 180 5 26 89 25 8 369 3 0 386 0 2 87 1 2 9 1 0 24 1 0 9 16 11 11 3 1 50 2 1 16 1 0 43 1 0 16 1 0 5 2 0 12 9 0 14 8 5 14 2 0 6 4 3 15 1 0 21 1 0 13 chain 114053 chr6 170805979 + 134579467 134580976 L1PA7 6471 + 4901 6432 16546 598 6 0 57 18 16 49 1 0 76 5 6 36 0 5 217 0 41 134 0 1 168 30 31 21 18 0 75 chain 5283 chr6 170805979 + 134598038 134598098 L1PB1 5432 + 4390 4450 84267 60 chain 32945 chr6 170805979 + 134611906 134612335 MLT2A1 477 + 0 477 39556 140 0 1 26 3 7 211 3 47 26 1 0 19 chain 120739 chr6 170805979 + 134776093 134777678 L1P2 5180 + 817 2456 15393 120 8 48 31 40 37 223 10 5 373 0 1 198 0 5 69 1 19 90 1 0 291 3 2 127 chain 287759 chr6 170805979 + 134789924 134793913 L1PA10 4194 + 175 4150 7207 13 7 0 13 3 0 6 15 13 12 2 0 9 1 0 9 1 0 21 2 0 16 1 0 7 45 19 24 2 0 7 10 9 10 6 7 10 1 0 11 4 3 9 1 0 79 10 8 476 0 4 12 2 3 49 0 1 30 1 0 97 1 0 107 5 4 19 0 4 180 1 0 8 6 7 135 1 0 228 1 0 5 0 1 39 3 1 7 0 1 155 0 5 48 1 0 106 5 11 37 4 14 79 1 4 182 0 1 15 0 5 16 8 7 36 5 6 13 0 1 4 1 0 63 0 5 141 5 6 94 2 0 230 12 12 124 0 1 116 0 3 121 4 3 21 6 1 6 0 6 316 1 0 194 3 0 34 chain 131898 chr6 170805979 + 134904549 134906097 LTR12C 1709 + 0 1709 13837 436 0 1 261 0 159 254 1 0 6 3 1 106 0 4 212 0 1 63 1 0 205 chain 11212 chr6 170805979 + 134934949 134935201 MER72B 755 + 508 755 68231 6 6 0 34 94 95 112 chain 102782 chr6 170805979 + 135112420 135113869 L1PB1 5432 + 4012 5423 17975 187 4 5 65 0 3 355 4 0 375 9 6 95 1 2 11 5 0 22 1 0 4 3 2 14 5 1 9 2 0 46 8 7 16 1 0 44 1 0 12 27 16 15 2 0 8 1 0 14 2 0 24 1 0 22 1 0 12 1 0 12 1 0 7 chain 6832 chr6 170805979 + 135127733 135127840 L1PB1 5432 + 5173 5279 78193 47 2 1 16 1 0 21 3 4 17 chain 6023 chr6 170805979 + 135127925 135128004 L1PB1 5432 + 5346 5422 80992 24 1 0 23 1 0 11 1 0 18 chain 3923 chr6 170805979 + 135145199 135145250 MER41B 635 + 494 547 91967 31 0 2 20 chain 2825 chr6 170805979 + 135175291 135175326 MER112 246 + 122 156 101441 6 1 0 28 chain 11418 chr6 170805979 + 135178573 135178737 MER30 238 + 41 233 67882 65 14 32 45 0 10 40 chain 61245 chr6 170805979 + 135247561 135248328 LTR17 781 + 0 781 26051 20 0 10 273 18 0 24 1 0 366 0 23 65 chain 4757 chr6 170805979 + 135264365 135264532 MER53 195 + 39 193 86920 19 94 81 54 chain 42967 chr6 170805979 + 135276332 135276916 L1PB3 3668 + 2576 3171 32792 91 1 0 162 3 8 68 3 7 66 0 1 8 2 0 18 0 2 76 3 5 83 chain 8903 chr6 170805979 + 135278786 135278899 L1PA8 5853 + 5741 5853 72777 19 2 1 92 chain 4098 chr6 170805979 + 135327123 135327185 MLT1B 390 + 314 380 90794 18 5 9 39 chain 15045 chr6 170805979 + 135374863 135375052 MER47A 366 + 86 275 62208 189 chain 5251 chr6 170805979 + 135447851 135448011 MER58A 224 + 45 207 84443 34 87 89 39 chain 69723 chr6 170805979 + 135468624 135469555 L1PA10 4194 + 2710 4161 24065 240 12 5 186 8 4 55 3 4 234 0 3 28 0 531 116 3 0 34 1 0 11 chain 143381 chr6 170805979 + 135511642 135513246 L1PA3long 6157 + 2337 3939 12828 753 0 1 74 9 6 768 chain 3969 chr6 170805979 + 135539058 135539107 Kanga1d 558 + 410 459 91649 49 chain 113624 chr6 170805979 + 135541787 135543527 L1PA14 3548 + 1713 3446 16602 179 0 3 80 0 1 81 10 10 51 0 11 119 0 1 224 0 3 59 2 1 147 8 5 205 52 49 11 2 0 33 16 14 5 2 0 105 12 8 13 2 0 5 6 5 80 1 0 16 6 11 80 23 18 33 4 2 10 2 1 6 1 0 13 5 4 31 chain 10019 chr6 170805979 + 135554456 135554567 L1PA2 6032 + 5912 6023 70377 111 chain 5041 chr6 170805979 + 135603889 135604080 MER52A 1651 + 781 914 85464 9 1 0 47 116 59 18 chain 51309 chr6 170805979 + 135650573 135651197 THE1B-int 1605 + 978 1605 29124 96 1 4 527 chain 26886 chr6 170805979 + 135651197 135651531 THE1B 368 + 0 345 46428 15 2 0 29 0 15 143 2 0 143 chain 180674 chr6 170805979 + 135719255 135721415 L1PA7 6471 + 4273 6465 10558 75 0 3 366 1 11 227 1 0 133 1 7 151 7 0 9 6 25 340 0 4 438 0 1 247 1 0 148 2 0 7 chain 29286 chr6 170805979 + 135723001 135723380 THE1B-int 1605 + 1220 1596 42916 68 14 11 194 0 1 64 1 0 38 chain 123420 chr6 170805979 + 135725398 135726968 THE1B-int 1605 + 0 1605 14957 19 0 1 410 1 26 351 0 1 100 0 3 5 0 1 300 0 3 222 4 5 84 0 1 31 1 0 42 chain 12820 chr6 170805979 + 135746463 135746655 L1PA8 5853 + 5658 5853 65415 21 2 0 11 1 0 49 5 4 17 1 0 43 0 8 42 chain 32552 chr6 170805979 + 135755766 135756225 MLT2A1 477 + 0 419 39910 168 5 2 12 0 1 19 0 1 194 20 0 9 19 0 13 chain 20080 chr6 170805979 + 135898900 135899255 THE1B 368 + 0 368 56281 47 32 39 22 8 9 52 1 0 21 17 25 17 1 0 7 5 4 125 chain 13740 chr6 170805979 + 135912326 135912528 MER2 342 + 135 329 63960 25 9 0 134 4 5 30 chain 165232 chr6 170805979 + 135979619 135981445 L1PA3long 6157 + 4320 6155 11397 179 0 4 800 0 8 806 3 0 38 chain 513675 chr6 170805979 + 136000726 136006368 L1PA3long 6157 + 518 6157 2590 5634 3 0 5 chain 30883 chr6 170805979 + 136126368 136126937 L1PB1 5432 + 4881 5420 41236 222 1 2 8 4 1 24 1 0 9 1 0 9 9 5 7 2 0 52 2 1 16 1 0 39 90 73 8 0 2 10 2 1 21 1 0 13 1 0 16 chain 22825 chr6 170805979 + 136167298 136167646 THE1B 368 + 0 368 52622 44 20 39 41 12 16 29 1 0 31 12 10 158 chain 58042 chr6 170805979 + 136172828 136173462 L1PA3long 6157 + 4320 4955 26947 345 0 1 289 chain 224825 chr6 170805979 + 136222024 136225454 L1PA8A 6298 + 3483 6291 8896 124 0 2 107 6 16 137 15 7 505 304 0 235 0 1 28 14 7 36 3 8 128 324 0 105 0 3 557 3 1 138 7 6 45 0 3 609 chain 4288 chr6 170805979 + 136243357 136243412 Tigger3b 1229 + 273 327 89580 18 1 0 36 chain 18820 chr6 170805979 + 136248290 136248646 THE1B 368 + 0 368 57753 47 41 48 16 16 17 41 6 5 24 0 3 8 1 5 18 10 8 128 chain 41850 chr6 170805979 + 136303305 136303841 MLT2A2 560 + 0 551 33456 13 0 3 163 0 1 224 2 13 134 chain 37377 chr6 170805979 + 136391158 136391555 L1HS 6032 + 5626 6023 36499 397 chain 40020 chr6 170805979 + 136401334 136401791 L1PA5 6144 + 5687 6144 34644 457 chain 20278 chr6 170805979 + 136450552 136450795 AluSp 311 + 50 293 56041 243 chain 109123 chr6 170805979 + 136478483 136480408 L1MA3 4352 + 1266 3141 17165 78 4 0 16 10 14 94 5 10 30 5 6 14 1 0 117 7 6 32 20 17 30 99 47 8 18 0 144 7 11 24 20 26 62 0 1 260 19 18 71 1 0 42 4 11 44 82 80 4 1 0 6 7 0 7 0 7 38 18 22 58 7 0 6 7 15 15 1 2 382 chain 37026 chr6 170805979 + 136497231 136498032 PRIMA4_LTR 623 + 92 600 36721 55 1 0 41 0 1 69 1 0 4 6 2 19 0 1 79 0 2 16 9 3 9 283 0 52 1 0 88 1 0 67 chain 22760 chr6 170805979 + 136533007 136533264 AluSp 311 + 17 274 52738 257 chain 33288 chr6 170805979 + 136586629 136587073 MLT2A1 477 + 0 477 39274 168 5 2 9 0 1 24 1 0 5 0 2 174 6 0 8 7 47 37 chain 4291 chr6 170805979 + 136590467 136590526 MER6A 605 + 51 107 89563 16 3 0 40 chain 3743 chr6 170805979 + 136621006 136621053 MADE1 96 - 1 85 93309 38 0 37 9 chain 4104 chr6 170805979 + 136630249 136630298 5S 121 + 10 59 90749 49 chain 184391 chr6 170805979 + 136686244 136688432 L1PA7 6471 + 4280 6469 10368 1342 0 2 107 9 10 97 6 7 112 0 1 438 6 4 59 2 0 10 chain 9581 chr6 170805979 + 136694903 136695019 L1MB8 1703 + 1469 1585 71301 116 chain 10239 chr6 170805979 + 136748312 136748439 MER85 139 + 2 139 69920 87 0 10 40 chain 6245 chr6 170805979 + 136807537 136807604 THE1B 368 + 1 68 80191 67 chain 24784 chr6 170805979 + 136823614 136823898 AluSp 311 + 6 290 49612 284 chain 84654 chr6 170805979 + 136852219 136853121 L1HS 6032 + 3926 4828 20693 902 chain 24557 chr6 170805979 + 136904438 136904807 THE1B 368 + 0 368 49933 166 7 6 22 18 10 102 17 25 37 chain 7704 chr6 170805979 + 136934776 136934864 HY3 101 + 12 100 75617 88 chain 3262 chr6 170805979 + 136950204 136950261 L1MC1 2226 + 2129 2184 97356 6 1 0 14 6 5 30 chain 31549 chr6 170805979 + 136959929 136960376 LTR2 463 + 0 462 40703 55 0 3 191 0 12 85 52 53 8 1 0 55 chain 29293 chr6 170805979 + 137061107 137061422 AluYb8 318 + 0 318 42905 189 0 3 126 chain 541553 chr6 170805979 + 137069835 137076310 L1PA7 6471 + 0 6469 1231 122 1 0 198 2 3 86 1 2 417 0 1 139 0 3 296 0 1 81 1 0 208 1 0 4 0 1 508 0 1 89 0 4 101 1 0 334 0 1 34 16 0 452 5 19 130 4 0 320 2 1 650 2 0 534 0 1 861 0 4 8 0 3 69 20 5 7 0 2 761 2 0 8 chain 47006 chr6 170805979 + 137119295 137119979 LTR76 689 + 7 687 30658 14 1 11 17 1 0 71 8 7 270 2 1 93 0 1 17 16 1 62 0 1 31 8 9 24 20 21 29 chain 39032 chr6 170805979 + 137162880 137163367 HERV1_LTRc 486 + 0 486 35330 35 3 0 59 1 0 314 5 13 12 5 0 53 chain 37909 chr6 170805979 + 137170253 137170725 HERV1_LTRc 486 + 0 486 36132 394 1 17 18 5 0 19 0 3 35 chain 16938 chr6 170805979 + 137179463 137179677 LTR43 600 + 163 377 59869 214 chain 28671 chr6 170805979 + 137198876 137199289 MLT2A1 477 + 0 399 43845 169 4 1 9 0 1 24 0 1 84 1 0 4 7 8 50 1 2 20 11 1 11 4 0 14 chain 25667 chr6 170805979 + 137207454 137207807 THE1A 353 + 0 353 48217 110 1 0 59 1 2 11 1 0 51 7 8 112 chain 125389 chr6 170805979 + 137207807 137209364 THE1A-int 1579 + 0 1577 14647 114 0 1 12 0 8 9 6 3 76 0 1 444 0 1 331 0 1 75 12 23 478 chain 6539 chr6 170805979 + 137209366 137209476 THE1A 353 + 0 109 79201 13 3 1 67 3 4 24 chain 18760 chr6 170805979 + 137209478 137209721 THE1A 353 + 110 353 57835 92 1 0 31 11 12 108 chain 9282 chr6 170805979 + 137244997 137245112 MER34B 572 + 402 517 71949 115 chain 70277 chr6 170805979 + 137254136 137255081 MER11A 1151 + 0 1146 23933 55 0 99 45 2 0 7 1 3 85 0 11 83 0 1 144 3 5 21 1 0 61 0 94 31 0 4 56 19 18 33 13 10 35 3 0 186 1 0 49 2 1 9 chain 30301 chr6 170805979 + 137260387 137260769 MER51B 395 + 0 395 41758 245 1 0 112 0 14 24 chain 3266 chr6 170805979 + 137263639 137263677 L1MB8 1703 + 532 570 97321 38 chain 7275 chr6 170805979 + 137294760 137294863 MER4D 903 + 0 103 76749 41 0 1 33 2 1 27 chain 30753 chr6 170805979 + 137302830 137303201 THE1C 375 + 0 372 41347 293 1 3 53 1 0 23 chain 9285 chr6 170805979 + 137337582 137337693 L1PA8 5853 + 5743 5853 71942 17 1 0 93 chain 11165 chr6 170805979 + 137348522 137348666 MER2 342 + 149 293 68314 144 chain 4581 chr6 170805979 + 137386937 137386994 MLT1B 390 + 313 371 87897 31 0 1 26 chain 46532 chr6 170805979 + 137456469 137456982 MER9a1 513 + 0 513 30829 513 chain 7081 chr6 170805979 + 137477230 137477392 MLT1C 463 + 76 236 77323 47 27 23 16 8 7 15 0 4 11 6 5 32 chain 23185 chr6 170805979 + 137526600 137526973 L1PA8 5853 + 5468 5842 52100 40 13 21 35 1 0 37 9 7 71 1 0 8 0 6 6 7 0 41 2 1 10 1 0 9 2 1 39 1 2 40 chain 9996 chr6 170805979 + 137597443 137597575 L1PB4 2604 + 2370 2500 70435 16 2 0 114 chain 3438 chr6 170805979 + 137610347 137610383 LTR40a 516 + 403 439 95759 36 chain 3380 chr6 170805979 + 137623449 137623486 MER51A 677 + 199 236 96303 37 chain 2989 chr6 170805979 + 137626424 137626457 MADE1 96 - 63 96 99963 33 chain 38148 chr6 170805979 + 137642989 137643576 L1PA11 4918 + 4004 4580 35948 60 2 3 257 0 10 59 2 1 19 0 1 43 3 0 18 2 0 12 2 1 11 55 42 13 1 0 13 2 0 13 chain 138090 chr6 170805979 + 137653654 137655833 MER61-int 3695 + 0 2125 13261 28 22 8 10 1 0 120 8 9 23 115 74 53 7 0 86 15 1 60 0 1 22 1 2 4 1 0 141 5 15 197 2 0 19 1 0 92 0 13 70 9 10 286 1 0 52 0 4 4 0 1 15 0 2 25 147 142 191 0 1 5 6 5 309 1 0 25 chain 3013 chr6 170805979 + 137678826 137678895 L1MC4 1079 + 29 97 99713 25 21 20 23 chain 66142 chr6 170805979 + 137844468 137845341 LTR5_Hs 974 + 0 974 24923 169 1 0 116 0 1 194 1 92 80 5 4 163 8 15 31 8 6 17 0 6 80 chain 20374 chr6 170805979 + 137856148 137856516 THE1B 368 + 0 368 55923 111 22 24 39 72 70 124 chain 23067 chr6 170805979 + 138019954 138020226 AluY 311 + 7 306 52265 126 2 0 92 0 29 52 chain 48450 chr6 170805979 + 138058591 138059413 L1PB1 5432 + 4639 5426 30133 69 1 0 96 1 0 85 0 2 212 15 11 21 1 0 21 2 0 3 2 0 9 12 10 39 7 6 10 7 6 42 1 0 15 67 50 24 1 0 22 1 0 12 1 0 18 1 0 4 chain 125961 chr6 170805979 + 138073890 138075789 THE1B-int 1605 + 0 1605 14564 432 8 35 31 25 23 174 1 2 76 320 0 832 chain 28062 chr6 170805979 + 138119250 138119605 THE1B 368 + 0 368 44773 41 1 16 111 1 0 192 1 0 8 chain 95831 chr6 170805979 + 138124925 138126305 L1PREC2 3366 + 1702 3051 18792 13 0 4 50 0 3 564 0 1 230 3 0 5 1 0 10 0 4 141 0 1 24 2 0 47 12 11 38 92 74 30 3 0 11 22 8 32 9 7 41 chain 113954 chr6 170805979 + 138200235 138201814 L1PB1 5432 + 3877 5424 16553 744 0 1 109 0 3 71 36 36 262 1 2 9 3 0 24 1 0 9 16 11 9 2 0 53 2 1 16 1 0 44 8 5 10 3 0 7 14 5 19 8 5 14 2 0 24 1 0 20 5 4 5 1 0 21 1 0 4 chain 51930 chr6 170805979 + 138212383 138213018 L1PA6 6164 + 5520 6162 28896 120 9 1 361 3 17 96 13 14 33 chain 2906 chr6 170805979 + 138300654 138300687 MADE1 96 - 63 96 100792 33 chain 5958 chr6 170805979 + 138322458 138322542 L1MA3 4352 + 3830 3914 81238 43 0 2 7 2 0 32 chain 4222 chr6 170805979 + 138347836 138347886 MADE1 96 + 45 96 89990 18 0 1 32 chain 80914 chr6 170805979 + 138357102 138357995 L1PA4 6152 + 3778 4671 21457 893 chain 356990 chr6 170805979 + 138364631 138369210 L1PA6 6164 + 1967 6161 5835 164 1 0 36 3 0 55 4 5 105 0 2 234 0 1 710 0 2 372 0 1 321 0 3 127 399 0 265 0 4 86 0 1 413 2 0 198 1 2 47 0 1 171 0 4 362 5 7 488 3 0 7 chain 5337 chr6 170805979 + 138444207 138444272 MER57B1 401 + 308 373 84030 65 chain 3635 chr6 170805979 + 138465118 138465171 Tigger3c 601 + 210 265 94141 26 2 0 5 0 4 20 chain 5834 chr6 170805979 + 138465175 138465243 Tigger3c 601 + 210 280 81772 25 0 2 43 chain 17925 chr6 170805979 + 138468402 138468624 MER1B 344 + 41 259 58724 175 4 0 43 chain 7696 chr6 170805979 + 138530055 138530155 MLT1A0 366 + 4 106 75639 23 1 3 76 chain 24930 chr6 170805979 + 138530221 138530561 L1PB2 3958 + 3476 3836 49382 60 0 25 56 1 0 64 1 0 72 2 0 21 2 1 61 chain 3290 chr6 170805979 + 138591356 138591405 Tigger7 736 + 60 110 97107 11 1 2 37 chain 24864 chr6 170805979 + 138610262 138610549 L1PA5 6144 + 5856 6143 49502 287 chain 19137 chr6 170805979 + 138619725 138619968 AluSc 308 + 58 300 57411 195 7 6 41 chain 29239 chr6 170805979 + 138626611 138626922 AluYa5 310 + 0 310 42983 132 1 0 178 chain 125033 chr6 170805979 + 138636142 138638011 L1MA2 4263 + 2143 4058 14696 89 8 7 67 12 15 197 12 14 112 5 3 128 1 0 31 2 1 97 5 6 113 0 6 14 11 18 86 10 12 76 1 0 32 0 3 279 6 10 6 1 0 15 7 6 19 0 12 45 1 0 24 4 5 105 13 12 121 9 8 16 9 12 39 0 13 41 chain 91267 chr6 170805979 + 138699889 138701457 HSMAR1 1287 + 0 1287 19455 76 0 4 35 18 10 64 0 3 37 0 15 195 0 11 107 3 2 27 12 19 55 8 0 5 0 10 181 1 2 5 1 0 248 326 8 8 0 2 122 0 2 34 chain 15287 chr6 170805979 + 138736535 138736701 L1PA2 6032 + 5866 6032 61928 166 chain 6830 chr6 170805979 + 138749259 138749337 MLT1A0 366 + 54 132 78203 78 chain 34282 chr6 170805979 + 138798720 138799151 MER57A1 433 + 0 433 38505 279 0 2 152 chain 9191 chr6 170805979 + 138822642 138822739 L1HS 6032 + 3 100 72137 97 chain 8689 chr6 170805979 + 138952699 138952797 L1MA5A 2387 + 1096 1194 73236 98 chain 117174 chr6 170805979 + 138993336 138994885 THE1C-int 1605 + 16 1589 16027 296 15 21 94 27 34 836 0 3 74 12 19 100 1 0 36 0 2 58 chain 41874 chr6 170805979 + 139092249 139092773 MER41A 554 + 0 546 33441 75 0 22 175 2 0 139 0 2 133 chain 13670 chr6 170805979 + 139109015 139109181 THE1C 375 + 209 375 64054 166 chain 263539 chr6 170805979 + 139206238 139210497 L1PB2 3958 + 138 3838 7865 37 5 0 3 1 0 49 5 2 35 314 0 22 2 0 6 2 0 134 7 12 86 0 12 718 2 0 25 0 1 99 314 0 68 2 0 5 0 2 6 1 2 60 2 1 52 2 1 63 18 18 5 0 3 225 8 9 90 5 6 99 0 1 386 15 5 4 0 1 83 0 4 211 7 86 49 1 0 283 0 4 96 3 1 55 1 0 75 2 0 13 4 0 94 2 0 21 16 16 35 1 0 63 7 6 69 2 0 20 1 0 63 chain 481153 chr6 170805979 + 139210497 139215833 L1PA4 6152 + 2 5350 3605 479 4 5 757 0 1 239 0 1 1060 0 2 1689 0 2 530 3 5 526 0 3 49 chain 86618 chr6 170805979 + 139223503 139224453 L1PA3long 6157 + 5204 6153 20295 805 1 0 144 chain 37592 chr6 170805979 + 139286577 139287048 MER1A 529 + 30 519 36341 430 1 6 19 0 13 21 chain 35788 chr6 170805979 + 139289069 139289527 LTR2 463 + 0 463 37535 56 0 4 302 12 13 88 chain 25221 chr6 170805979 + 139329351 139329732 L1PA8 5853 + 5466 5851 48910 98 1 0 45 2 0 50 11 12 8 1 0 15 2 0 5 2 3 38 2 1 19 2 1 70 0 10 10 chain 26238 chr6 170805979 + 139359081 139359581 L1PB3 3668 + 3117 3592 47365 70 47 48 55 1 0 79 24 23 86 20 4 21 2 0 14 0 1 10 3 1 35 9 5 13 1 0 10 chain 81558 chr6 170805979 + 139363369 139364315 L1PA6 6164 + 5218 6162 21323 100 0 4 59 3 0 18 1 0 755 2 0 8 chain 39933 chr6 170805979 + 139412180 139412644 L1PA6 6164 + 5698 6162 34713 464 chain 10408 chr6 170805979 + 139571767 139571947 MER1A 529 + 356 529 69598 74 43 36 63 chain 7400 chr6 170805979 + 139612099 139612190 MLT1A0 366 + 256 347 76395 91 chain 7940 chr6 170805979 + 139659034 139659142 Tigger3c 601 + 452 563 75026 20 6 7 43 0 2 39 chain 27490 chr6 170805979 + 139662405 139662703 AluYa5 310 + 11 307 45593 86 2 0 210 chain 127631 chr6 170805979 + 139672478 139674365 L1MA2 4263 + 2239 4105 14337 18 5 0 182 2 4 158 0 1 39 16 46 155 7 1 66 0 3 42 0 10 168 0 9 7 8 0 94 11 10 319 2 0 9 8 5 77 1 0 136 39 0 10 3 0 113 0 1 30 28 26 62 28 21 44 chain 13750 chr6 170805979 + 139675778 139675961 MER30 238 + 35 237 63948 72 4 23 107 chain 20615 chr6 170805979 + 139689016 139689260 L1PA5 6144 + 5901 6144 55614 224 1 0 19 chain 3085 chr6 170805979 + 139705528 139705563 MLT1F-int 966 + 883 918 98936 35 chain 96051 chr6 170805979 + 139769473 139770555 L1PA5 6144 + 5060 6144 18769 745 0 1 149 0 1 188 chain 3559 chr6 170805979 + 139796982 139797026 MSTB 430 + 1 45 94756 44 chain 5766 chr6 170805979 + 139828187 139828383 MER20 218 + 20 205 82051 40 66 62 14 25 24 38 6 0 7 chain 20374 chr6 170805979 + 139838738 139839091 THE1B 368 + 0 368 55922 111 1 3 6 1 0 49 34 35 6 0 4 18 12 20 54 7 6 25 0 2 29 chain 58557 chr6 170805979 + 139843798 139844630 L1PA11 4918 + 3697 4502 26801 93 0 1 14 12 10 78 0 1 245 1 2 190 11 6 56 2 1 12 1 0 36 22 4 29 2 0 14 1 0 13 chain 13835 chr6 170805979 + 139902266 139902450 THE1B 368 + 181 368 63821 17 0 2 16 2 3 149 chain 31904 chr6 170805979 + 139962992 139963467 LTR45B 484 + 16 484 40410 61 1 0 105 61 8 15 0 46 211 0 1 21 chain 510371 chr6 170805979 + 140114729 140120893 L1PA6 6164 + 0 6159 2750 236 0 2 243 3 2 969 1 0 228 0 1 159 0 1 518 2 0 154 0 1 73 1 4 135 12 0 10 0 12 424 0 4 214 12 0 10 0 8 16 106 106 8 6 0 35 5 4 119 0 1 554 1 0 174 0 1 141 7 1 704 0 1 45 0 4 832 2 0 5 chain 9647 chr6 170805979 + 140118149 140118255 L1PA6 6164 - 2634 2740 66963 106 chain 167800 chr6 170805979 + 140162394 140164285 L1PA3long 6157 + 4260 6157 11225 1677 1 7 59 7 0 9 0 7 138 chain 30962 chr6 170805979 + 140194965 140195383 MER41A 554 + 10 431 41160 376 24 27 18 chain 510418 chr6 170805979 + 140229841 140236243 L1PA7 6471 + 0 6467 2747 11 0 1 231 0 1 8 7 14 139 3 0 68 1 0 101 4 1 146 31 36 10 7 10 4 0 1 109 0 13 10 3 0 5 8 11 323 12 31 72 0 1 210 1 0 45 2 5 212 0 4 119 0 1 312 1 0 132 1 5 52 0 1 65 0 2 110 0 5 105 14 20 379 8 0 361 1 0 235 2 3 96 2 0 173 2 0 509 8 7 143 0 4 942 0 3 81 0 2 577 0 1 189 chain 99082 chr6 170805979 + 140369135 140370229 L1PA3long 6157 + 5055 6149 18404 277 6 7 676 1 0 134 chain 4310 chr6 170805979 + 140394083 140394133 L1MB8 1703 + 1503 1553 89444 50 chain 41216 chr6 170805979 + 140502268 140502787 MER75 514 + 0 514 33833 122 5 0 48 0 1 277 2 1 65 chain 18534 chr6 170805979 + 140581885 140582159 L1PA8 5853 + 5585 5853 58067 23 2 0 70 2 1 14 2 0 7 6 7 33 2 1 19 1 0 93 chain 30055 chr6 170805979 + 140597895 140598649 L1PA8A 6298 + 5569 6291 41997 186 33 0 92 0 1 72 4 5 212 3 0 44 3 5 81 9 0 8 0 9 7 chain 26835 chr6 170805979 + 140631765 140632046 AluYb8 318 + 36 317 46492 281 chain 312396 chr6 170805979 + 140646285 140650333 HERVL-int 5654 + 0 4220 6567 427 88 89 87 0 33 11 34 17 28 13 154 165 9 10 88 1 2 7 1 0 237 0 9 309 1 0 118 1 2 286 0 1 207 0 1 4 2 1 48 1 2 530 1 2 595 18 16 519 0 1 86 0 1 102 4 5 20 chain 4888 chr6 170805979 + 140650422 140650482 MER57C2 434 + 372 432 86216 60 chain 5038 chr6 170805979 + 140660624 140660702 MADE1 96 - 0 96 85474 34 8 26 36 chain 16817 chr6 170805979 + 140663857 140664211 MSTA 426 + 29 426 60014 60 32 61 35 17 15 6 2 0 17 36 34 31 8 28 110 chain 53434 chr6 170805979 + 140688606 140689198 L1P1 4361 + 2454 3046 28415 592 chain 25705 chr6 170805979 + 140771377 140771744 THE1B 368 + 2 368 48162 48 9 0 6 0 9 107 4 3 108 9 8 28 0 1 48 chain 43403 chr6 170805979 + 140859596 140860138 MER4E 760 + 0 572 32501 24 6 0 422 4 8 55 0 32 31 chain 325303 chr6 170805979 + 140868221 140871932 L1PA5 6144 + 2428 6143 6302 150 0 1 484 1 3 114 1 0 770 0 2 15 0 1 95 2 0 805 0 1 7 0 1 4 1 0 1262 chain 90732 chr6 170805979 + 140876934 140878428 L1PA3long 6157 + 4685 6157 19547 334 22 0 1138 chain 171188 chr6 170805979 + 140973119 140975188 L1PA7 6471 + 4366 6457 11038 100 0 1 605 5 27 97 1 0 425 2 1 560 0 1 127 1 0 10 5 6 131 chain 122695 chr6 170805979 + 141080570 141082125 THE1A-int 1579 + 0 1567 15083 111 1 4 155 0 3 167 0 2 799 6 9 253 1 3 27 1 0 34 chain 157448 chr6 170805979 + 141082486 141085202 L1PB1 5432 + 2810 5401 11918 16 1 0 16 45 41 53 0 1 5 1 0 40 2 1 46 5 24 211 44 50 117 0 8 125 0 1 129 1 0 34 10 4 57 0 1 230 42 0 9 6 9 11 13 18 6 9 0 288 4 9 75 1 2 103 7 6 17 1 0 4 0 1 36 20 7 5 2 0 186 0 2 137 0 1 5 0 46 58 186 68 5 1 0 8 3 2 14 5 1 9 2 0 52 3 2 11 1 4 45 1 0 5 32 21 11 10 8 5 1 0 14 2 0 24 1 0 22 1 0 9 chain 11606 chr6 170805979 + 141098216 141098405 THE1B 368 + 169 368 67559 29 35 45 125 chain 9327 chr6 170805979 + 141101323 141101656 MLT1A0 366 + 9 350 71860 71 198 204 29 0 2 35 chain 22090 chr6 170805979 + 141104085 141104500 L1PA11 4918 + 4185 4578 53713 17 15 13 118 6 4 40 0 3 13 2 1 12 2 0 68 2 0 14 1 0 20 4 0 9 3 0 5 2 0 7 24 20 18 2 0 11 chain 4189 chr6 170805979 + 141109103 141109148 LTR14A 344 + 0 45 90207 45 chain 29082 chr6 170805979 + 141148879 141149192 AluYa5 310 + 0 310 43216 132 3 0 178 chain 78341 chr6 170805979 + 141167955 141169138 LTR12D 1347 + 0 1339 22017 38 1 2 109 0 4 145 2 38 151 39 0 49 7 38 46 40 0 52 78 0 22 0 41 192 0 200 212 chain 2123 chr6 170805979 + 141168634 141168661 LTR12D 1347 + 481 508 101397 27 chain 4101 chr6 170805979 + 141168661 141168708 LTR12D 1347 + 580 627 90767 47 chain 86665 chr6 170805979 + 141174932 141176549 LTR12D 1347 + 0 1347 20282 95 7 19 135 36 33 16 2 38 199 7 38 13 5 4 54 11 2 39 9 26 209 333 0 89 25 2 11 4 0 27 4 3 30 1 0 15 1 2 131 0 8 109 chain 75741 chr6 170805979 + 141181825 141182671 L1PA3long 6157 + 5311 6157 22645 846 chain 76382 chr6 170805979 + 141183343 141184453 LTR12D 1347 + 0 1347 22469 125 0 1 76 54 51 12 40 76 157 0 109 87 0 17 274 0 97 16 23 0 108 0 1 9 1 3 128 chain 26681 chr6 170805979 + 141206162 141206461 L1PA3long 6157 + 5843 6143 46713 159 0 1 140 chain 14433 chr6 170805979 + 141223871 141224021 AluYg6 310 + 35 185 62987 150 chain 120515 chr6 170805979 + 141235019 141236334 L1PA3long 6157 + 4842 6157 15443 1315 chain 28518 chr6 170805979 + 141368076 141368396 L1PA4 6152 + 4732 5053 44091 155 0 1 165 chain 5448 chr6 170805979 + 141405209 141405524 LOR1-int 1871 + 1316 1637 83472 29 26 24 22 116 125 38 65 64 19 chain 74137 chr6 170805979 + 141433939 141435151 L1PA8A 6298 + 5341 6291 23057 151 1 5 82 0 1 88 268 0 133 0 1 19 0 5 134 0 1 178 2 0 15 1 4 25 7 0 108 chain 25899 chr6 170805979 + 141452824 141453215 LTR7 482 + 0 473 47869 69 8 46 108 5 6 37 0 31 10 7 17 95 12 14 40 chain 315133 chr6 170805979 + 141453226 141457062 HERVH-int 3825 + 0 3823 6501 333 1 0 43 0 4 89 1 0 4 0 1 58 5 0 17 1 0 21 1 0 9 27 39 13 21 18 30 42 0 19 2 1 66 1 5 9 1 0 60 1 4 184 6 1 262 0 1 390 0 5 281 0 12 27 0 4 63 1 2 222 0 1 1525 chain 43076 chr6 170805979 + 141491151 141491682 MER41A 554 + 2 533 32729 531 chain 8957 chr6 170805979 + 141496227 141496343 MER30 238 + 86 228 72656 14 0 26 102 chain 8785 chr6 170805979 + 141554188 141554327 L1MA6 2487 + 1855 1995 73025 43 11 13 16 1 0 68 chain 10417 chr6 170805979 + 141565966 141566087 AluJr4 308 + 164 285 69578 121 chain 557720 chr6 170805979 + 141566105 141572136 L1PA2 6032 + 0 6032 258 2197 0 1 3834 chain 36664 chr6 170805979 + 141572195 141572846 L1PB1 5432 + 4781 5422 36974 24 2 10 136 1 2 57 11 9 84 1 2 9 5 0 20 1 0 12 1 0 8 10 6 8 2 0 51 1 0 16 3 2 48 34 23 13 4 17 8 2 0 24 1 0 22 1 0 12 1 0 18 chain 21383 chr6 170805979 + 141608679 141608999 THE1B 368 + 0 342 54656 44 0 15 33 28 39 41 1 0 28 2 0 96 1 0 46 chain 27774 chr6 170805979 + 141618030 141619161 LTR12C 1709 + 0 1568 18140 468 2 0 182 0 278 16 0 1 13 5 162 104 0 4 330 1 0 10 chain 152675 chr6 170805979 + 141620318 141621981 L1PA2 6032 + 4351 6015 12192 172 0 1 1491 chain 3487 chr6 170805979 + 141622017 141622159 LTR12C 1709 + 1568 1709 18140 50 15 14 77 chain 167363 chr6 170805979 + 141654493 141656654 HERVL-int 5654 + 200 2344 11252 117 0 1 137 3 0 6 43 5 44 4 5 355 3 8 181 34 18 23 0 1 143 0 3 138 0 1 532 0 1 161 0 9 32 0 17 113 0 1 92 chain 547769 chr6 170805979 + 141746025 141752036 L1PA2 6032 + 4 6032 877 601 0 1 102 0 7 2416 0 4 2047 0 4 359 0 1 486 chain 7911 chr6 170805979 + 141761968 141762076 L1PA16 3655 + 3487 3592 75089 90 3 0 15 chain 53544 chr6 170805979 + 141774924 141775773 L1PA14 3548 + 2661 3449 28381 22 9 7 242 12 10 11 2 0 26 2 0 5 34 0 16 9 5 11 0 3 91 2 0 5 2 0 16 2 0 6 1 0 84 1 0 111 1 0 11 5 1 35 4 2 13 4 2 21 1 0 32 chain 22580 chr6 170805979 + 141800951 141801302 THE1B 368 + 0 365 53006 23 25 41 103 6 5 100 17 16 77 chain 550476 chr6 170805979 + 141814814 141820842 L1PA2 6032 + 0 6030 707 256 1 0 175 0 1 1596 0 1 1627 1 0 540 0 1 975 0 1 857 chain 12223 chr6 170805979 + 141868517 141868734 MER47A 366 + 93 319 66431 114 14 18 47 27 32 15 chain 72262 chr6 170805979 + 141868888 141869685 L1PA3long 6157 + 5359 6157 23470 26 0 1 771 chain 26433 chr6 170805979 + 141880828 141881109 AluYg6 310 + 23 304 47081 281 chain 53354 chr6 170805979 + 141896163 141896866 L1PA8 5853 + 5156 5853 28454 402 7 6 46 2 0 9 0 1 59 3 2 12 5 4 43 2 1 19 1 0 93 chain 10864 chr6 170805979 + 141916684 141916862 LOR1b 457 + 12 167 68754 20 5 0 6 15 0 7 6 2 20 0 1 99 chain 551607 chr6 170805979 + 141916863 141922880 L1PA2 6032 + 6 6032 631 476 1 2 640 0 3 755 0 4 1278 1 0 1028 0 1 1024 0 1 814 chain 19426 chr6 170805979 + 141939384 141939742 THE1B 368 + 7 367 57108 37 15 30 98 1 0 28 2 0 36 67 57 74 chain 511598 chr6 170805979 + 141939816 141946270 L1PA7 6471 + 19 6457 2683 132 28 30 217 0 3 9 5 0 643 1 2 194 0 6 67 0 1 70 1 4 141 0 1 132 8 9 593 1 0 13 9 7 343 1 2 1012 3 6 122 52 11 47 3 1 685 0 2 128 14 20 366 2 3 72 1 0 508 0 3 237 1 2 146 0 2 287 11 0 8 7 17 134 chain 550385 chr6 170805979 + 141969534 141975701 L1PA3long 6157 + 5 6157 716 69 0 1 383 0 1 562 0 2 1165 8 6 2794 0 1 113 0 1 164 20 1 39 1 0 532 0 1 317 chain 21880 chr6 170805979 + 141993180 141993454 THE1A-int 1579 + 0 277 54002 241 0 3 33 chain 15176 chr6 170805979 + 141993454 141993640 THE1A 353 + 167 353 61649 186 chain 8057 chr6 170805979 + 142000088 142000200 L1MA4A 3247 + 2554 2659 74736 20 7 0 85 chain 54162 chr6 170805979 + 142014658 142015366 LTR30 714 + 0 714 28166 243 0 1 4 0 4 127 2 1 69 11 12 169 1 3 59 1 0 22 chain 40203 chr6 170805979 + 142015665 142016117 LTR7 482 + 0 482 34518 31 1 0 199 0 31 221 chain 320859 chr6 170805979 + 142016119 142020058 HERVH-int 3825 + 0 3825 6390 212 0 11 309 5 0 38 1 0 10 1 0 24 1 14 13 3 0 25 1 0 42 2 1 18 159 13 49 1 0 444 15 0 57 0 7 398 4 31 359 0 1 378 1 0 144 0 2 1225 chain 40220 chr6 170805979 + 142021331 142021782 LTR7 482 + 0 482 34510 221 1 0 4 0 1 4 0 31 221 chain 22114 chr6 170805979 + 142025715 142026085 L1PA13 3608 + 3169 3518 53680 105 2 0 61 1 0 27 11 9 21 1 0 4 2 0 47 2 0 5 2 0 19 1 0 5 22 19 13 5 0 14 chain 113737 chr6 170805979 + 142050781 142052396 L1MA1 4479 + 229 1871 16585 50 11 9 34 1 3 19 0 1 242 0 2 81 7 10 38 12 11 13 19 26 16 14 18 109 3 1 74 1 5 129 1 0 270 4 10 69 1 4 36 10 8 62 0 1 104 0 1 114 0 1 71 chain 27306 chr6 170805979 + 142057633 142057923 AluYa5 310 + 20 310 45819 290 chain 119224 chr6 170805979 + 142071092 142072656 THE1B-int 1605 + 0 1594 15653 187 4 0 243 0 24 9 0 1 166 9 9 13 7 8 170 0 8 172 5 6 154 2 0 5 8 12 156 4 0 54 0 1 196 chain 20750 chr6 170805979 + 142211487 142211729 AluYk4 311 + 58 298 55431 223 2 0 17 chain 22245 chr6 170805979 + 142231612 142231899 L1PA6 6164 + 3646 3934 53484 147 0 1 140 chain 3154 chr6 170805979 + 142254145 142254184 Arthur1B 1073 + 62 101 98337 39 chain 179214 chr6 170805979 + 142281587 142283649 L1PA6 6164 + 4099 6162 10619 990 0 1 1072 chain 6635 chr6 170805979 + 142297912 142298027 MLT2B4 540 + 2 118 78861 27 16 18 48 1 0 23 chain 4203 chr6 170805979 + 142299814 142299900 MLT2D 439 + 160 248 90100 34 22 21 18 0 3 12 chain 3358 chr6 170805979 + 142311155 142311193 MER96 175 - 31 69 96498 38 chain 3759 chr6 170805979 + 142323888 142323941 Tigger3c 601 + 293 343 93140 37 3 0 13 chain 42386 chr6 170805979 + 142346520 142347014 L1PA7 6471 + 5955 6449 33137 494 chain 5915 chr6 170805979 + 142351265 142351356 L1PREC2 3366 + 2779 2867 81422 8 0 1 18 1 0 44 1 0 4 2 0 13 chain 101221 chr6 170805979 + 142453848 142455176 L1PA8 5853 + 4515 5849 18159 158 1 0 52 1 2 279 0 3 52 7 11 12 2 3 279 5 8 34 0 1 155 1 0 44 2 0 71 1 0 61 2 1 17 5 4 87 chain 10451 chr6 170805979 + 142491742 142491895 L1PREC2 3366 + 2545 2689 69520 96 17 8 40 chain 4067 chr6 170805979 + 142530706 142530984 MLT2B2 565 + 377 563 90982 17 205 114 11 2 0 27 0 1 16 chain 29213 chr6 170805979 + 142535002 142535382 THE1D-int 1627 + 1237 1620 43029 49 8 11 323 chain 195289 chr6 170805979 + 142537313 142540597 HERVH48-int 3304 + 187 3245 9873 9 3 0 32 1 0 28 13 0 21 1 0 9 2 10 66 7 3 4 1 0 72 2 1 12 6 0 10 13 7 81 1 0 7 3 1 39 16 1 26 8 0 3 1 0 17 4 0 17 8 5 57 14 12 39 1 0 30 1 0 70 25 17 116 5 2 10 1 0 22 1 0 13 2 0 31 9 4 19 2 0 7 1 0 15 1 0 21 2 0 25 2 1 16 2 0 6 1 0 4 11 5 109 0 1 12 1 0 12 1 0 8 6 5 213 1 0 89 1 0 278 2 1 10 1 0 230 1 2 5 0 1 7 25 22 67 1 0 12 1 0 15 0 1 31 1 0 229 1 0 4 14 13 5 1 0 44 4 2 13 5 1 30 2 0 17 45 27 9 1 0 9 30 22 7 4 0 12 39 30 27 3 0 8 11 5 26 12 5 9 1 0 23 2 0 5 1 0 45 6 3 68 60 44 69 3 1 13 25 16 13 38 24 26 chain 30976 chr6 170805979 + 142542838 142543225 MER48 407 + 3 407 41147 330 0 17 57 chain 15382 chr6 170805979 + 142574970 142575210 THE1D 372 + 94 352 61810 10 0 1 61 9 15 8 3 0 4 2 0 13 16 32 114 chain 550994 chr6 170805979 + 142577013 142583172 L1PA3long 6157 + 10 6155 674 540 1 8 1251 1 0 1142 0 1 748 1 0 1288 0 1 1090 22 1 75 chain 40141 chr6 170805979 + 142649497 142649948 LTR7 482 + 0 482 34564 264 0 31 187 chain 23678 chr6 170805979 + 142783074 142783351 AluSc 308 + 11 304 51310 41 0 16 236 chain 26318 chr6 170805979 + 142792366 142792725 L1PA8 5853 + 5496 5853 47241 68 1 0 36 6 8 74 1 0 9 1 0 43 0 1 5 2 1 18 3 2 92 chain 5995 chr6 170805979 + 142806340 142806411 MER41B 635 + 481 554 81099 30 0 1 10 0 1 31 chain 23093 chr6 170805979 + 142923051 142923343 AluSg7 307 + 0 293 52221 24 1 0 107 0 1 6 15 16 139 chain 26220 chr6 170805979 + 142972335 142972764 L1PB2 3958 + 3423 3838 47391 16 2 0 12 4 0 94 10 9 52 0 1 11 1 0 63 2 1 40 0 1 13 16 14 25 1 0 25 17 13 25 chain 91053 chr6 170805979 + 142976991 142978104 L1P3 4156 + 3022 4139 19494 71 0 4 173 3 4 303 0 2 529 2 0 8 4 3 20 chain 28002 chr6 170805979 + 142992572 142993727 L1PA8 5853 + 3962 5116 12615 97 0 4 271 1 0 36 7 6 629 1 0 5 2 0 106 chain 321467 chr6 170805979 + 142993751 142997870 L1P2 5180 + 2 4125 6374 135 1 0 13 1 0 44 1 0 50 18 17 50 36 15 68 17 15 39 21 13 54 1 0 48 1 0 167 5 13 44 0 15 91 4 8 30 0 1 237 7 10 5 3 0 141 1 4 234 1 0 762 1 2 905 0 4 702 7 8 132 4 9 38 chain 17553 chr6 170805979 + 142997870 142998594 L1PA8 5853 + 5118 5846 12615 443 2 1 48 2 0 68 2 1 13 5 15 33 2 1 19 1 0 86 chain 11425 chr6 170805979 + 143009579 143009752 MER30 238 + 59 238 67871 12 3 0 36 10 22 70 3 0 39 chain 3913 chr6 170805979 + 143089477 143089526 MIR 256 + 142 191 92026 49 chain 43316 chr6 170805979 + 143120773 143121275 MER9a3 513 + 0 513 32553 16 1 12 485 chain 3210 chr6 170805979 + 143170804 143170864 L1PB1 5432 + 5365 5422 97796 5 1 0 22 1 0 8 5 4 18 chain 27191 chr6 170805979 + 143209975 143210338 THE1C 375 + 7 375 45983 179 11 12 7 0 1 94 0 4 45 1 0 26 chain 13130 chr6 170805979 + 143226880 143227110 MER30 238 + 0 238 64880 15 11 12 4 1 0 63 3 18 5 3 0 45 8 7 21 3 0 48 chain 231665 chr6 170805979 + 143316485 143319623 L1PB1 5432 + 2299 5430 8703 126 5 0 8 16 22 37 8 0 342 3 0 173 4 1 55 0 7 255 0 1 144 0 11 251 1 0 260 0 15 169 0 1 294 0 4 154 2 1 127 0 1 46 1 2 292 20 18 22 1 0 6 1 0 13 22 16 47 2 1 15 1 0 45 1 0 15 63 48 26 1 0 23 1 0 11 1 0 18 1 0 4 1 0 4 chain 19104 chr6 170805979 + 143378056 143378420 THE1C 375 + 0 375 57440 13 2 0 34 0 6 13 46 50 19 0 4 32 42 42 136 1 0 26 chain 53147 chr6 170805979 + 143447777 143448413 L1PA5 6144 + 5515 6142 28514 213 1 0 95 8 4 161 1 0 147 3 0 7 chain 5209 chr6 170805979 + 143449808 143449887 5S 121 + 0 88 84631 23 8 17 48 chain 21800 chr6 170805979 + 143526281 143526725 L1MA5A 2387 + 1988 2374 54100 45 3 0 7 1 3 25 0 3 37 7 6 18 1 0 23 2 0 32 1 0 27 4 1 17 28 0 64 41 21 13 1 0 10 1 0 22 2 0 12 chain 20122 chr6 170805979 + 143530785 143531144 L1PB3 3668 + 3221 3558 56232 69 1 0 76 26 25 87 44 26 24 3 1 29 chain 5068 chr6 170805979 + 143623050 143623125 Kanga2_a 737 + 521 594 85319 62 2 0 11 chain 21679 chr6 170805979 + 143645070 143645423 L1PB1 5432 + 4888 5207 54257 64 0 1 137 0 1 11 2 1 11 27 0 20 1 0 7 6 5 11 5 1 11 2 0 38 chain 142295 chr6 170805979 + 143649327 143651260 L1PA11 4918 + 2655 4567 12913 94 6 5 163 2 0 157 0 1 20 0 1 116 0 2 13 0 1 193 6 7 340 4 12 514 10 4 24 10 6 45 23 21 13 3 0 67 2 0 8 7 6 19 22 13 10 17 13 11 1 0 13 chain 17478 chr6 170805979 + 143657004 143657248 L1PA8 5853 + 5612 5853 59260 66 2 1 8 2 1 52 2 1 19 1 0 86 0 1 6 chain 5073 chr6 170805979 + 143714005 143714074 MADE1 96 + 4 88 85291 25 0 16 20 1 0 23 chain 123707 chr6 170805979 + 143915426 143916999 THE1B-int 1605 + 0 1599 14899 432 0 25 205 0 1 4 7 7 396 9 5 101 0 2 173 0 1 85 0 1 161 chain 95626 chr6 170805979 + 144010236 144011380 L1PA7 6471 + 4593 5740 18828 80 2 1 187 1 0 383 1 0 87 5 4 67 0 2 149 0 1 60 0 3 92 0 1 30 chain 22706 chr6 170805979 + 144022498 144022849 THE1B 368 + 0 368 52820 79 9 10 80 2 0 6 2 4 5 1 0 14 0 3 13 0 4 9 2 12 5 1 0 98 1 2 24 chain 25916 chr6 170805979 + 144076271 144076694 MSTC 436 + 14 432 47837 125 25 1 15 0 16 135 18 24 6 6 0 30 0 7 7 9 5 47 chain 14602 chr6 170805979 + 144082622 144082788 L1PA2 6032 + 5867 6032 62797 5 1 0 160 chain 6162 chr6 170805979 + 144144625 144144716 MER3 215 + 94 190 80473 42 1 0 31 1 7 16 chain 6403 chr6 170805979 + 144216557 144216629 tRNA-Leu-TTA 75 + 3 75 79663 72 chain 26303 chr6 170805979 + 144271348 144271685 L1PA11 4918 + 3710 4047 47264 15 1 0 139 2 0 5 0 2 105 5 6 65 chain 20030 chr6 170805979 + 144296161 144296456 MER1B 344 + 37 344 56342 118 22 23 89 8 19 58 chain 26982 chr6 170805979 + 144381512 144381865 THE1B 368 + 0 368 46295 44 11 26 19 0 1 79 1 0 199 chain 4068 chr6 170805979 + 144392139 144392190 MER33 330 + 158 209 90962 51 chain 6837 chr6 170805979 + 144413652 144413742 Tigger3b 1229 + 149 239 78177 90 chain 3436 chr6 170805979 + 144560817 144560861 MER46C 351 + 182 233 95769 29 0 7 15 chain 28023 chr6 170805979 + 144636169 144636553 L1PA7 6471 + 6085 6469 44828 52 0 3 214 3 0 39 36 0 10 0 36 30 chain 7266 chr6 170805979 + 144830741 144830840 MER30 238 + 132 228 76777 63 3 0 33 chain 14671 chr6 170805979 + 144858975 144859336 THE1B 368 + 0 368 62709 15 3 1 31 68 76 45 10 8 22 24 0 8 15 44 18 1 0 7 1 0 93 chain 6511 chr6 170805979 + 144871828 144871992 MER2 342 + 141 311 79305 61 8 11 17 36 37 21 10 12 11 chain 12473 chr6 170805979 + 144918693 144918869 MER1A 529 + 352 529 66026 104 14 15 58 chain 2851 chr6 170805979 + 144921205 144921327 MER3 215 - 25 153 101236 16 78 84 28 chain 28768 chr6 170805979 + 144923174 144923606 LTR7Y 441 + 0 439 43673 103 9 0 57 68 84 195 chain 285682 chr6 170805979 + 144923608 144927208 HERVH-int 3825 + 0 3825 7266 532 5 0 38 126 0 10 1 0 24 4 55 17 0 42 8 1 0 30 1 2 6 0 2 12 0 3 44 1 11 537 0 2 66 0 1 53 5 8 178 8 35 331 10 13 290 1 2 680 5 0 38 9 11 5 0 3 29 10 220 260 0 2 225 chain 29118 chr6 170805979 + 144928424 144928858 LTR7Y 441 + 0 441 43164 103 9 0 57 68 84 197 chain 4599 chr6 170805979 + 144946142 144946476 MLT1A 405 + 4 373 87800 19 49 60 19 0 11 7 120 148 13 63 48 44 chain 9556 chr6 170805979 + 144948362 144948492 MSTA 426 + 254 405 71360 38 4 25 88 chain 4907 chr6 170805979 + 145062935 145063014 MADE1 96 + 0 96 86121 24 8 24 21 0 1 26 chain 138072 chr6 170805979 + 145072312 145073802 L1PA2 6032 + 4542 6032 13263 1490 chain 48768 chr6 170805979 + 145111389 145111967 LTR10C 591 + 0 586 30025 231 0 2 120 0 1 183 0 5 44 chain 121994 chr6 170805979 + 145125560 145127070 THE1B-int 1605 + 38 1572 15191 138 2 0 250 0 25 680 4 5 436 chain 73983 chr6 170805979 + 145133107 145133989 MER11D 897 + 0 897 23096 282 1 0 309 12 28 278 chain 305373 chr6 170805979 + 145178272 145182289 L1PA8 5853 + 50 5678 6712 15 8 6 11 66 26 192 0 10 8 17 10 141 1 0 161 0 1 243 0 4 527 2 1 313 23 31 29 1 1612 84 0 10 142 4 5 76 25 28 318 0 4 171 0 1 20 1 2 4 1 0 279 15 21 63 13 17 884 5 6 36 1 0 47 2 0 36 0 1 32 chain 5809 chr6 170805979 + 145182722 145182792 tRNA-Gln-CAA 69 + 0 69 81885 57 1 0 12 chain 6019 chr6 170805979 + 145236825 145236913 MER3 215 + 66 144 81001 70 10 0 8 chain 53506 chr6 170805979 + 145237558 145238313 MER4E 760 + 0 760 28396 23 0 1 146 3 1 58 1 4 100 51 53 48 1 0 317 0 2 7 chain 5543 chr6 170805979 + 145246829 145246906 MER66B 489 + 406 483 83061 24 0 1 32 2 1 19 chain 32197 chr6 170805979 + 145280614 145281013 L1PA7 6471 + 6070 6465 40190 241 8 7 141 3 0 6 chain 36525 chr6 170805979 + 145323203 145323626 L1PA5 6144 + 5043 5466 37063 423 chain 4349 chr6 170805979 + 145336283 145336451 MER58A 224 + 47 220 89180 32 104 109 32 chain 14829 chr6 170805979 + 145464095 145464399 THE1D 372 + 45 372 62480 27 23 33 24 1 5 32 0 6 6 52 56 102 4 3 33 chain 126319 chr6 170805979 + 145465742 145467152 L1PA3long 6157 + 4750 6156 14507 433 5 1 972 chain 27207 chr6 170805979 + 145468572 145468994 L1MA3 4352 + 3017 3433 45953 64 1 2 61 6 5 43 3 0 10 26 25 20 1 0 138 1 0 48 chain 95022 chr6 170805979 + 145474482 145475623 L1PA7 6471 + 5320 6469 18904 8 2 0 5 0 2 112 0 3 165 1 0 82 0 1 342 0 3 156 1 4 253 1 0 13 chain 188598 chr6 170805979 + 145503222 145505257 L1PA2 6032 + 3996 6031 10186 2035 chain 9052 chr6 170805979 + 145532051 145532235 HERVK22-int 3844 + 3662 3844 72446 88 26 25 12 0 1 11 26 24 21 chain 14644 chr6 170805979 + 145561847 145562056 L1PA8 5853 + 5638 5847 62738 32 1 2 7 1 0 11 1 0 50 2 1 19 1 0 15 0 3 69 chain 21192 chr6 170805979 + 145578915 145579157 L1PA4 6152 + 5905 6146 54897 229 1 0 12 chain 124477 chr6 170805979 + 145615506 145617063 THE1B-int 1605 + 14 1605 14783 23 6 8 85 0 1 299 0 25 173 1 3 793 0 4 177 chain 451187 chr6 170805979 + 145663257 145668174 L1PA2 6032 + 12 6029 4359 239 1 1094 5 0 2 726 0 2 1910 0 2 1415 0 1 621 chain 500804 chr6 170805979 + 145673305 145679416 L1PA6 6164 + 0 6162 3102 410 0 1 6 1 0 5 12 8 142 0 1 57 1 0 4 10 1 152 0 17 170 0 1 18 5 12 48 4 6 103 2 0 112 0 2 185 5 9 857 1 2 67 1 5 311 10 16 320 0 1 138 1 0 107 7 6 394 3 0 5 1 0 241 0 1 327 0 1 99 0 4 616 0 29 180 0 1 717 27 18 229 chain 233992 chr6 170805979 + 145717050 145719631 L1PA3long 6157 + 3577 6156 8638 1626 1 0 122 2 0 224 0 1 606 chain 5357 chr6 170805979 + 145731438 145731503 L1P5 443 + 348 413 83924 65 chain 17515 chr6 170805979 + 145731515 145731732 L1PA8A 6298 + 6070 6284 59227 183 3 0 31 chain 101085 chr6 170805979 + 145741995 145743260 L1P3 4156 + 375 1628 18176 26 2 0 173 15 1 93 16 15 451 1 2 96 0 4 392 chain 42099 chr6 170805979 + 145750400 145750948 MLT2A2 560 + 0 560 33291 180 1 0 222 0 11 100 3 1 36 0 4 6 chain 2904 chr6 170805979 + 145765157 145765190 THE1B-int 1605 + 123 156 100816 33 chain 26285 chr6 170805979 + 145770592 145770884 L1HS 6032 + 5740 6028 47296 281 4 0 7 chain 8065 chr6 170805979 + 145801428 145801530 MER30 238 + 133 238 74711 20 0 6 39 3 0 40 chain 29531 chr6 170805979 + 145828169 145828539 THE1C 375 + 8 375 42573 117 3 0 72 0 1 152 1 0 25 chain 162068 chr6 170805979 + 145854369 145856130 L1PA2 6032 + 4269 6030 11610 1761 chain 121545 chr6 170805979 + 145870945 145872608 L1PA11 4918 + 2910 4567 15252 147 7 6 208 4 5 77 0 9 502 2 0 5 0 2 116 0 1 185 0 1 221 1 0 61 0 1 15 19 16 20 44 31 15 1 0 13 chain 6296 chr6 170805979 + 145875238 145875401 MER20 218 + 52 212 80014 23 23 21 35 33 36 27 4 0 18 chain 60030 chr6 170805979 + 145877351 145878099 MER4E 760 + 3 753 26367 19 0 2 240 0 1 7 2 1 480 chain 21613 chr6 170805979 + 146011940 146012230 L1PREC2 3366 + 2507 2792 54336 165 0 1 22 2 0 22 2 0 35 2 0 40 chain 81801 chr6 170805979 + 146061448 146062487 L1PA7 6471 + 5441 6454 21278 282 56 28 294 0 2 407 chain 119985 chr6 170805979 + 146108611 146110170 THE1B-int 1605 + 0 1597 15539 195 17 30 29 1 2 55 0 1 21 0 2 9 0 1 85 1 26 191 0 1 4 1 0 186 10 5 754 chain 9483 chr6 170805979 + 146155193 146155403 Tigger3a 397 + 15 266 71512 12 18 16 20 9 0 12 24 83 100 7 0 8 chain 3409 chr6 170805979 + 146377927 146377967 THE1B-int 1605 + 715 755 95998 40 chain 53279 chr6 170805979 + 146393591 146394210 L1PA7 6471 + 4783 5406 28471 21 0 2 298 1 2 46 0 1 253 chain 22402 chr6 170805979 + 146479463 146479841 THE1B 368 + 0 368 53269 64 3 35 7 32 0 66 2 1 29 13 11 36 7 0 119 chain 6730 chr6 170805979 + 146480474 146480553 L1PREC2 3366 + 2251 2330 78541 79 chain 36525 chr6 170805979 + 146500223 146500643 LTR3 431 + 0 421 37062 258 0 1 162 chain 107984 chr6 170805979 + 146522019 146523183 L1HS 6032 + 4733 5897 17329 1164 chain 35365 chr6 170805979 + 146525610 146526076 LOR1a 498 + 0 474 37789 129 0 1 101 10 14 179 0 3 47 chain 80710 chr6 170805979 + 146561475 146562372 L1P1 4361 + 1349 2252 21489 67 0 5 410 0 1 420 chain 3352 chr6 170805979 + 146568150 146568218 MSTD 398 + 69 159 96573 39 16 38 13 chain 33964 chr6 170805979 + 146568742 146569176 L1PA7 6471 + 6036 6470 38732 201 7 8 57 0 1 17 2 3 142 3 0 5 chain 25318 chr6 170805979 + 146580547 146580880 L1P1 4361 + 3019 3350 48759 216 9 7 108 chain 10778 chr6 170805979 + 146584624 146584752 MER49 923 + 189 317 68905 128 chain 26354 chr6 170805979 + 146639335 146639692 L1PREC2 3366 + 2029 2390 47195 25 0 1 69 6 7 81 1 3 175 chain 4825 chr6 170805979 + 146639709 146639809 U6 107 + 13 93 86564 5 3 0 53 26 9 13 chain 147479 chr6 170805979 + 146639846 146641997 L1PA14 3548 + 1356 3485 12516 132 0 1 21 1 5 284 1 0 554 1 0 131 0 1 52 1 0 129 0 1 19 5 4 37 16 13 11 0 2 10 0 14 55 1 0 4 0 1 101 3 1 14 2 0 17 15 14 16 9 5 14 5 0 81 23 19 12 2 0 6 1 0 84 13 12 99 1 0 9 4 0 38 4 2 12 1 0 21 1 0 41 6 0 10 1 0 20 chain 10737 chr6 170805979 + 146653933 146654059 MER85 139 + 2 138 68974 87 0 10 39 chain 28029 chr6 170805979 + 146687394 146687753 L1PA8A 6298 + 5931 6290 44821 4 1 0 244 6 7 104 chain 29564 chr6 170805979 + 146716309 146716628 AluYb8 318 + 0 317 42530 132 2 0 185 chain 44722 chr6 170805979 + 146854795 146855346 MLT2A2 560 + 0 560 31736 14 1 0 169 1 0 219 0 11 147 chain 28485 chr6 170805979 + 146856726 146857065 L1PA6 6164 + 5821 6160 44148 339 chain 2745 chr6 170805979 + 146880150 146880185 PABL_A 660 + 216 252 102005 10 0 1 25 chain 3080 chr6 170805979 + 146925561 146925595 MER57A1 433 + 0 34 98985 34 chain 51374 chr6 170805979 + 146925642 146926496 MER57-int 2662 + 1845 2660 29087 64 3 0 38 2 3 370 16 12 72 1 6 14 19 13 35 4 0 29 77 58 23 1 0 10 5 0 33 3 0 35 chain 68417 chr6 170805979 + 146987887 146988675 L1PA6 6164 + 5127 5920 24353 77 0 1 159 1 4 97 1 2 453 chain 5737 chr6 170805979 + 146990919 146990983 LTR12C 1709 + 1293 1357 82194 64 chain 25187 chr6 170805979 + 146998266 146998531 AluYb9 318 + 27 293 48972 181 0 1 84 chain 15324 chr6 170805979 + 147031284 147031470 L1PA7 6471 + 6273 6467 61879 145 0 1 33 0 7 8 chain 42911 chr6 170805979 + 147034465 147035006 MER41A 554 + 0 546 32828 469 1 6 71 chain 346525 chr6 170805979 + 147251005 147255371 L1PA7 6471 + 15 6375 5958 165 0 1 7 13 13 141 3 0 69 0 1 117 0 201 322 4 11 14 1 0 125 0 8 168 0 1 345 0 4 282 0 1770 187 1 0 243 0 2 105 1 4 205 0 4 128 0 5 6 1 3 157 0 1 154 0 3 85 6 4 75 0 1 462 0 3 31 36 9 454 0 1 157 40 50 56 chain 4236 chr6 170805979 + 147362091 147362145 MER53 195 - 98 153 89908 24 0 1 30 chain 54328 chr6 170805979 + 147419470 147420475 L1PA8 5853 + 5144 5852 28110 47 2 1 44 3 0 284 0 8 36 1 0 46 2 0 66 4 3 15 3 1 45 2 1 19 294 0 92 chain 164821 chr6 170805979 + 147460234 147462299 L1PA7 6471 + 4411 6453 11424 92 1 9 466 16 0 441 0 1 201 1 0 46 0 1 456 25 7 166 17 0 8 0 18 37 4 5 88 chain 97324 chr6 170805979 + 147473130 147474587 L1PB2 3958 + 2410 3836 18617 35 6 7 25 7 0 4 1 0 164 1 2 4 1 0 129 4 3 141 1 0 250 5 6 4 1 0 123 2 0 53 41 29 50 26 20 67 0 1 18 1 0 72 1 0 60 13 12 39 0 3 15 3 1 28 1 0 61 chain 3755 chr6 170805979 + 147487716 147487760 MER58D 378 + 321 365 93208 44 chain 51569 chr6 170805979 + 147607184 147607980 L1MA1 4479 + 3378 4190 29005 11 4 0 162 5 8 103 1 0 49 4 3 25 2 0 14 1 0 12 0 39 22 1 0 19 2 0 14 1 0 88 1 0 5 3 0 46 6 16 64 1 0 14 3 0 15 2 0 35 1 0 9 10 5 16 12 5 13 chain 10379 chr6 170805979 + 147630782 147631020 HERVH-int 3825 + 221 576 69653 101 60 59 29 11 10 15 1 121 14 1 0 6 chain 6543 chr6 170805979 + 147823545 147823625 L1PA8 5853 + 5773 5853 79182 80 chain 26526 chr6 170805979 + 147828335 147828786 MLT2A2 560 + 0 560 46939 92 4 0 88 1 0 16 60 64 42 2 111 16 14 15 116 chain 3101 chr6 170805979 + 147904381 147904432 MLT1J1 437 + 243 293 98786 29 7 6 15 chain 3530 chr6 170805979 + 147909780 147909824 MER58B 340 + 288 332 95020 44 chain 26144 chr6 170805979 + 147918392 147918688 L1PA3long 6157 + 4041 4337 47507 296 chain 42875 chr6 170805979 + 147920051 147920596 MLT2A2 560 + 0 560 32848 399 3 14 113 0 4 30 chain 48246 chr6 170805979 + 147965371 147965949 L1PA7 6471 + 5894 6468 30198 429 4 6 132 6 0 7 chain 25938 chr6 170805979 + 147979519 147979873 THE1A 353 + 0 353 47806 15 16 14 18 0 1 46 1 0 129 0 1 129 chain 3735 chr6 170805979 + 147982521 147982562 MADE1 96 + 53 94 93359 41 chain 83361 chr6 170805979 + 147990433 147991505 L1PA8 5853 + 4785 5853 20951 157 0 1 62 1 4 305 1 0 248 1 0 44 4 2 70 2 1 9 11 10 41 3 2 19 2 1 92 chain 81624 chr6 170805979 + 148010234 148011424 THE1D-int 1627 + 23 1627 21310 15 1 0 209 3 481 30 12 2 8 0 3 6 1 7 23 4 5 4 1 0 335 30 30 132 62 0 149 1 0 132 0 1 32 chain 60933 chr6 170805979 + 148099850 148100698 Tigger1 2417 + 983 1830 26130 299 4 5 12 8 0 9 15 16 163 5 6 180 0 1 121 7 10 25 chain 33473 chr6 170805979 + 148163185 148163564 L1HS 6032 + 1848 2227 39111 379 chain 22519 chr6 170805979 + 148290619 148290890 SVA_B 1603 + 1340 1603 53095 116 8 1 40 0 2 99 3 0 5 chain 151548 chr6 170805979 + 148554213 148555870 L1PA3long 6157 + 4497 6157 12251 520 1 0 290 0 1 78 0 2 221 0 1 547 chain 22364 chr6 170805979 + 148579937 148580199 AluY 311 + 39 300 53322 84 2 0 9 0 1 167 chain 11443 chr6 170805979 + 148591555 148591714 MER2 342 + 180 341 67845 114 10 12 35 chain 26836 chr6 170805979 + 148601322 148601637 L1PA7 6471 + 6157 6468 46491 17 0 1 286 5 0 7 chain 43300 chr6 170805979 + 148601685 148602199 MER9a2 513 + 0 513 32571 175 0 1 280 2 0 57 chain 20407 chr6 170805979 + 148639771 148640179 LTR7 482 + 0 482 55875 69 29 17 15 15 14 17 49 132 21 1 0 80 1 2 15 0 2 35 12 14 49 chain 288211 chr6 170805979 + 148640181 148643838 HERVH-int 3825 + 0 3825 7191 212 0 11 307 1 0 11 1 0 4 0 1 9 0 3 12 2 1 9 1 0 7 31 21 11 17 32 5 1 0 27 2 0 14 1 0 14 65 0 45 0 1 6 0 2 14 0 3 416 15 4 24 15 0 344 0 5 110 4 31 90 5 0 155 5 0 40 1 5 291 0 1 772 9 11 39 12 222 250 6 8 225 chain 23823 chr6 170805979 + 148645098 148645499 LTR7 482 + 0 473 51062 69 6 95 21 51 0 39 8 40 155 12 14 40 chain 38366 chr6 170805979 + 148645896 148646471 HSMAR1 1287 + 14 1286 35802 130 13 24 28 59 741 84 0 4 261 chain 97089 chr6 170805979 + 148653904 148656929 MER57-int 2662 + 108 2659 18650 18 1 9 52 0 2 124 2 0 106 39 0 39 1 5 308 1530 1122 15 3 0 7 4 3 401 20 16 88 1 0 10 11 6 65 28 15 19 6 5 5 1 0 10 4 1 23 0 1 9 5 0 33 3 0 34 chain 87383 chr6 170805979 + 148665712 148666794 MER11A 1151 + 10 1151 20162 69 0 8 109 0 4 27 0 4 63 0 11 379 0 1 176 5 2 15 1 36 72 1 0 99 1 0 31 0 1 34 chain 37530 chr6 170805979 + 148688846 148689361 MLT2A2 560 + 0 560 36383 183 1 0 119 10 44 53 3 14 92 0 1 54 chain 25502 chr6 170805979 + 148731349 148731725 THE1B 368 + 0 368 48481 13 2 0 27 0 5 127 4 1 21 8 5 75 4 0 13 7 6 75 chain 26311 chr6 170805979 + 148755502 148756427 THE1C 375 + 23 375 47253 91 1 0 28 0 4 9 578 0 30 0 2 188 chain 25369 chr6 170805979 + 148759573 148759871 AluY 311 + 7 306 48667 125 0 1 173 chain 3384 chr6 170805979 + 148769494 148769533 MIRc 230 + 67 106 96235 39 chain 72904 chr6 170805979 + 148845815 148846607 L1PA3long 6157 + 5365 6157 23337 792 chain 22127 chr6 170805979 + 148900304 148900645 THE1B 368 + 1 356 53660 138 0 4 26 2 1 28 45 55 17 0 1 85 chain 41477 chr6 170805979 + 148978270 148978838 L1PA8 5853 + 5320 5853 33688 49 36 8 187 1 0 45 2 0 73 1 0 6 1 0 52 2 1 19 2 1 92 chain 23733 chr6 170805979 + 149078830 149079206 THE1C 375 + 0 375 51223 64 24 27 32 3 0 19 0 4 39 25 23 141 3 0 26 chain 13552 chr6 170805979 + 149104695 149104892 L1PB4 2604 + 2389 2570 64248 49 15 0 114 1 0 18 chain 19549 chr6 170805979 + 149276838 149277212 THE1B 368 + 0 368 56957 108 107 102 22 1 0 74 1 0 4 1 2 56 chain 43316 chr6 170805979 + 149462529 149463067 MLT2A2 560 + 9 559 32554 387 6 17 119 0 1 26 chain 21148 chr6 170805979 + 149480486 149480764 AluSp 311 + 4 305 54946 40 9 37 218 5 0 6 chain 7076 chr6 170805979 + 149498875 149499380 L1MD1 2063 + 1580 1983 77347 68 3 0 15 379 282 8 1 0 6 1 0 24 chain 23400 chr6 170805979 + 149506204 149506484 AluSp 311 + 8 294 51755 100 0 6 180 chain 5105 chr6 170805979 + 149516956 149517016 U7 62 + 1 61 85135 60 chain 24049 chr6 170805979 + 149537721 149539846 Tigger1 2417 + 1170 2231 50730 124 1 2 6 33 0 60 3 0 12 1719 690 167 chain 136303 chr6 170805979 + 149554053 149557086 L1PB1 5432 + 3325 5426 13410 154 1 5 74 0 1 160 1 0 220 1 2 91 306 16 110 4 11 50 15 20 386 1 0 78 0 2 99 0 2 8 17 20 108 38 37 124 625 2 9 5 0 24 51 43 38 1 0 18 1 0 20 6 0 23 1 0 16 3 0 8 17 9 11 51 46 22 1 0 12 1 0 15 1 0 7 chain 8948 chr6 170805979 + 149631436 149631547 HY1 111 + 0 111 72670 77 0 1 4 1 0 29 chain 28903 chr6 170805979 + 149654762 149655100 L1PA7 6471 + 6128 6467 43475 323 0 1 15 chain 3243 chr6 170805979 + 149666181 149666218 L1MEf 1413 + 178 215 97541 37 chain 21869 chr6 170805979 + 149709973 149710313 MER4D1 891 + 541 881 54017 54 7 9 59 19 19 122 1 0 14 11 10 53 chain 41337 chr6 170805979 + 149778956 149779490 HERV1_LTRb 511 + 0 511 33769 83 3 0 7 15 3 269 8 0 149 chain 17519 chr6 170805979 + 149857090 149857876 LTR8 732 + 9 732 59223 52 0 4 102 538 473 8 2 0 84 chain 119823 chr6 170805979 + 149908016 149909582 THE1B-int 1605 + 17 1592 15563 411 15 41 18 11 18 180 30 5 650 1 0 6 1 3 243 chain 49089 chr6 170805979 + 149931857 149932825 L1PA8 5853 + 5205 5853 29911 319 320 0 38 1 0 42 0 5 73 1 0 6 1 0 52 2 1 15 8 7 90 chain 29745 chr6 170805979 + 150100683 150101075 MER48 407 + 0 407 42315 29 16 12 91 0 20 21 1 0 234 chain 14291 chr6 170805979 + 150124950 150125139 MSTA 426 + 0 194 63208 21 0 1 48 8 12 112 chain 27799 chr6 170805979 + 150312464 150312898 MER51B 395 + 0 381 45184 86 64 13 88 2 1 41 1 0 152 chain 36234 chr6 170805979 + 150365508 150365974 LTR15 485 + 0 478 37249 6 0 1 32 0 1 109 0 2 124 0 4 158 1 0 5 2 0 13 1 8 15 chain 35890 chr6 170805979 + 150378543 150378933 L1PA3long 6157 + 5399 5789 37478 390 chain 3886 chr6 170805979 + 150400658 150400794 MER5A1 166 + 0 135 92248 23 75 74 38 chain 33712 chr6 170805979 + 150414064 150414685 MLT2A1 477 + 0 477 38914 169 4 1 9 0 1 23 0 1 180 1 0 13 6 0 8 171 35 37 chain 3872 chr6 170805979 + 150414602 150414645 MLT2A1 477 + 354 397 92344 43 chain 112270 chr6 170805979 + 150437218 150438802 L1PB2 3958 + 2207 3838 16782 41 0 1 90 0 1 85 0 1 54 0 76 368 1 0 157 0 2 112 0 1 21 0 2 25 0 1 10 39 10 44 2 0 54 3 2 12 13 9 53 2 0 12 4 0 19 12 16 13 1 3 38 2 1 43 5 7 26 1 0 46 3 4 12 1 0 74 2 0 21 6 5 9 0 2 48 chain 18571 chr6 170805979 + 150450312 150450521 L1PA7 6471 + 6251 6460 58023 209 chain 99743 chr6 170805979 + 150461389 150462521 L1PA6 6164 + 4399 5528 18328 442 1 0 655 2 0 32 chain 208757 chr6 170805979 + 150473920 150476245 L1PA3long 6157 + 3844 6156 9391 263 0 1 1701 16 1 178 0 1 167 chain 23331 chr6 170805979 + 150493625 150493978 THE1B 368 + 1 368 51877 9 0 3 27 0 5 37 37 33 8 0 11 38 2 1 195 chain 63962 chr6 170805979 + 150505147 150506119 L1MA3 4352 + 3256 4206 25419 34 1 2 8 0 2 52 5 6 543 1 2 189 88 62 24 7 6 20 chain 91884 chr6 170805979 + 150506995 150508235 SVA_F 1814 + 10 1814 19362 139 10 0 225 0 272 56 3 0 61 11 14 70 0 289 29 0 4 7 3 6 192 19 21 34 1 3 267 4 9 86 4 0 4 0 1 15 chain 34348 chr6 170805979 + 150523290 150523745 L1PA7 6471 + 6007 6461 38457 58 16 10 29 0 6 20 1 2 259 9 7 63 chain 38068 chr6 170805979 + 150526227 150526867 MER4A 717 + 0 717 36017 332 0 1 7 1 0 57 4 3 30 119 196 17 15 16 58 chain 5423 chr6 170805979 + 150548837 150548902 LTR24B 570 + 505 570 83596 65 chain 50754 chr6 170805979 + 150655150 150656107 L1PA7 6471 + 5828 6470 29295 274 319 0 131 0 4 68 0 8 8 14 6 143 chain 27154 chr6 170805979 + 150750513 150750803 AluYa5 310 + 15 304 46036 117 1 0 172 chain 9157 chr6 170805979 + 150781174 150781625 MER75 514 + 380 514 72218 47 323 3 67 0 3 14 chain 10707 chr6 170805979 + 150838343 150838524 MER30 238 + 47 238 69036 48 16 0 10 4 33 62 3 0 38 chain 54293 chr6 170805979 + 150849126 150849867 LTR12_ 688 + 0 688 28121 121 0 49 41 0 1 153 103 0 323 chain 276943 chr6 170805979 + 150849895 150853298 HERV9-int 5642 + 0 5642 7521 209 1 15 361 0 1 184 0 2249 139 1 5 199 0 3 574 0 2 454 0 1 321 0 1 267 0 1 4 1 0 240 1 0 227 7 5 37 19 17 9 1 0 60 1 0 11 30 7 19 4 0 3 2 0 17 chain 57201 chr6 170805979 + 150855902 150856692 LTR12_ 688 + 0 688 27195 247 8 8 25 0 1 106 103 0 301 chain 44172 chr6 170805979 + 150859612 150860664 HERVK-int 6823 + 5650 6567 32037 68 8 7 23 1 0 100 1 0 32 4 3 123 1 0 51 3 0 5 1 0 4 9 7 73 4 2 6 1 0 24 17 11 11 1 0 20 2 0 3 1 0 8 1 0 5 213 137 11 2 0 27 43 32 10 10 4 8 1 0 8 1 0 5 1 0 27 1 0 4 1 0 12 34 25 17 1 0 4 chain 3812 chr6 170805979 + 150864291 150864332 MER2 342 + 151 192 92755 41 chain 11814 chr6 170805979 + 150915172 150915364 MER30 238 + 25 227 67178 67 4 7 9 4 0 10 2 18 17 1 2 23 6 0 49 chain 8040 chr6 170805979 + 150999022 150999132 Tigger4b 360 + 191 317 74781 100 0 16 10 chain 21634 chr6 170805979 + 151093405 151093669 AluSg7 307 + 29 293 54308 102 0 1 142 7 6 13 chain 52315 chr6 170805979 + 151127782 151130285 THE1D-int 1627 + 0 1621 28784 13 4 6 8 0 1 85 0 1 161 0 1 9 1747 858 30 0 1 15 17 13 47 1 2 56 0 2 268 1 0 13 0 3 28 chain 34471 chr6 170805979 + 151128064 151128531 LTR10F 562 + 0 562 38377 38 0 2 76 0 115 19 28 0 44 0 1 248 1 6 13 chain 32494 chr6 170805979 + 151129379 151129803 LTR7B 505 + 0 497 39948 105 0 10 60 0 38 12 3 27 26 0 2 38 0 1 46 1 0 76 14 13 43 chain 62662 chr6 170805979 + 151168766 151169689 L1PB1 5432 + 4535 5422 25720 92 3 0 442 0 1 4 1 0 29 1 2 9 3 0 26 1 0 6 1 0 12 5 1 8 2 0 53 2 1 16 1 0 40 7 6 13 3 0 6 16 6 19 2 0 5 1 0 14 12 10 14 1 0 21 1 0 31 chain 12718 chr6 170805979 + 151173244 151173386 L1PA3long 6157 + 6015 6157 65584 142 chain 44743 chr6 170805979 + 151182919 151183433 MER9a3 513 + 0 513 31728 258 1 0 255 chain 5757 chr6 170805979 + 151188578 151188644 MER2 342 + 149 215 82098 66 chain 54199 chr6 170805979 + 151287592 151288223 L1PA7 6471 + 5837 6470 28157 38 0 1 580 1 2 12 chain 17995 chr6 170805979 + 151319662 151319877 7SK 245 + 30 245 58657 215 chain 134545 chr6 170805979 + 151449629 151451216 SVA_D 2077 + 4 2077 13589 17 0 3 20 9 17 378 0 40 243 0 120 74 6 270 29 0 2 13 0 78 38 30 0 42 0 1 688 chain 32782 chr6 170805979 + 151522317 151522784 LTR10F 562 + 0 554 39684 44 0 1 62 4 88 36 7 10 15 7 0 10 8 14 274 chain 36353 chr6 170805979 + 151525283 151525749 LTR7B 505 + 0 488 37170 208 34 0 21 0 55 41 5 6 157 chain 3015 chr6 170805979 + 151630582 151630938 MLT1H2 457 + 73 431 99702 25 290 293 22 4 3 15 chain 31014 chr6 170805979 + 151779917 151780368 L1PA7 6471 + 6086 6470 41109 163 74 8 64 1 0 149 chain 68130 chr6 170805979 + 151833916 151834709 L1PA7 6471 + 5678 6470 24423 620 1 0 172 chain 57270 chr6 170805979 + 151847872 151848490 L1PA2 6032 + 5413 6031 27167 618 chain 4898 chr6 170805979 + 151850138 151850213 MLT1C 463 + 10 86 86163 11 6 7 58 chain 117053 chr6 170805979 + 151863689 151865030 L1PA5 6144 + 4761 6076 16046 399 30 0 133 2 6 777 chain 11918 chr6 170805979 + 151905931 151906069 MER85 139 + 0 139 66972 126 0 1 12 chain 26433 chr6 170805979 + 151912733 151913085 L1PA8 5853 + 5508 5853 47080 51 6 5 45 2 0 70 1 0 12 1 0 49 2 1 19 1 0 93 chain 8662 chr6 170805979 + 151929510 151929623 L1PA8 5853 + 5741 5853 73317 19 2 1 92 chain 42495 chr6 170805979 + 151968061 151968548 L1PA7 6471 + 5100 5586 33065 324 1 0 162 chain 52448 chr6 170805979 + 151971875 151972612 L1PB 1623 + 115 849 28741 50 1 3 19 1 0 4 2 0 51 7 8 19 2 1 127 4 2 86 6 5 93 0 1 265 chain 32574 chr6 170805979 + 152021025 152021456 MLT2A1 477 + 0 477 39891 142 0 1 26 1 5 28 6 7 176 3 43 49 chain 20385 chr6 170805979 + 152021670 152022042 THE1B 368 + 0 368 55905 49 1 0 59 26 27 41 24 17 8 0 1 12 13 16 12 3 2 62 1 0 4 1 2 56 chain 517570 chr6 170805979 + 152028165 152034034 L1PA5 6144 + 0 5877 2392 718 0 3 1307 0 1 37 0 3 1433 1 0 891 0 1 778 2 0 304 1 0 5 0 1 269 0 3 123 chain 486193 chr6 170805979 + 152078502 152084429 L1PA6 6164 + 0 6162 3509 154 5 0 6 5 10 114 11 10 155 8 0 118 1 0 182 0 1 47 0 17 636 1 0 338 2 4 64 15 3 366 0 7 170 6 31 124 5 3 623 6 7 126 0 1 169 18 30 12 1 2 1113 1 0 396 0 10 225 5 1 45 0 4 10 1 0 11 9 194 623 chain 7476 chr6 170805979 + 152084477 152084571 THE1A 353 + 246 341 76185 14 1 2 79 chain 31149 chr6 170805979 + 152118344 152118779 L1PA8 5853 + 5434 5853 41019 124 0 5 47 7 5 63 2 1 9 17 1 51 2 1 19 1 0 93 chain 27603 chr6 170805979 + 152251476 152251772 AluYa5 310 + 0 295 45450 132 1 0 163 chain 12782 chr6 170805979 + 152280334 152280548 MER30 238 + 1 238 65470 56 3 4 29 4 9 11 4 0 9 1 19 11 0 6 35 3 0 48 chain 28388 chr6 170805979 + 152363967 152364328 THE1C 375 + 13 375 44286 172 1 2 188 chain 25529 chr6 170805979 + 152366053 152366358 AluSp 311 + 2 307 48439 18 0 1 260 0 1 20 2 0 5 chain 26143 chr6 170805979 + 152371145 152371494 THE1C 375 + 0 351 47510 122 3 0 13 0 4 45 12 13 154 chain 6737 chr6 170805979 + 152418139 152418307 MER67C 710 + 79 259 78522 37 76 88 55 chain 29310 chr6 170805979 + 152450008 152450380 THE1C 375 + 7 375 42871 111 5 2 230 1 0 25 chain 2523 chr6 170805979 + 152490693 152490736 LTR7C 471 + 419 463 103548 21 6 7 16 chain 2719 chr6 170805979 + 152491237 152491304 HERVH-int 3825 + 380 446 102193 16 25 24 26 chain 43796 chr6 170805979 + 152495439 152495957 LTR10F 562 + 0 551 32262 201 0 31 28 0 2 289 chain 83019 chr6 170805979 + 152513665 152514634 L1PA7 6471 + 5496 6466 21011 125 1 0 77 0 2 644 0 2 113 2 0 7 chain 11867 chr6 170805979 + 152562669 152562799 L1PA7 6471 + 6327 6457 67076 130 chain 28497 chr6 170805979 + 152584948 152585326 THE1C 375 + 0 375 44130 185 2 3 14 2 0 56 1 0 91 1 0 26 chain 25859 chr6 170805979 + 152598095 152598454 THE1B 368 + 0 368 47927 169 1 0 29 4 2 14 17 29 125 chain 55931 chr6 170805979 + 152607444 152608140 L1PA8A 6298 + 5583 6288 27583 166 0 1 3 0 1 31 0 6 471 0 1 25 chain 511864 chr6 170805979 + 152608998 152615125 L1PA6 6164 + 0 6161 2669 150 3 0 341 5 6 72 1 0 175 11 12 252 0 1 152 0 1 319 0 1 245 0 1 230 1 0 1079 0 1 151 0 1 353 3 1 150 3 5 613 1 0 288 0 14 678 0 4 523 7 8 141 15 11 24 1 5 7 0 1 87 10 20 14 3 5 19 chain 112467 chr6 170805979 + 152653539 152655203 L1PA8 5853 + 4499 5853 16755 507 0 3 555 1 0 44 2 0 69 6 5 13 2 1 55 307 0 9 1 0 93 chain 118753 chr6 170805979 + 152675205 152676602 L1PA7 6471 + 4439 5873 15762 232 0 8 400 0 1 192 1 3 317 0 22 13 0 4 242 chain 45693 chr6 170805979 + 152682103 152682656 LTR6B 557 + 0 557 31212 359 0 1 135 0 1 4 0 1 33 0 1 22 chain 32560 chr6 170805979 + 152682944 152683388 LTR7 482 + 0 476 39904 101 20 14 62 1 6 41 0 1 28 6 39 58 1 0 126 chain 24236 chr6 170805979 + 152685447 152685724 AluYc 301 + 2 277 50441 108 4 0 10 0 2 155 chain 26021 chr6 170805979 + 152717403 152717757 THE1B 368 + 0 368 47691 40 0 15 111 8 6 26 4 6 89 1 0 75 chain 25342 chr6 170805979 + 152804386 152804745 THE1B 368 + 0 368 48722 44 0 15 54 0 1 54 2 0 24 3 0 95 22 20 61 chain 50964 chr6 170805979 + 152817941 152818592 L1PA7 6471 + 5831 6464 29223 82 20 6 175 1 0 182 1 0 9 4 2 177 chain 6610 chr6 170805979 + 152822061 152822145 MER96B 391 + 72 156 78950 84 chain 125391 chr6 170805979 + 152834161 152835658 LTR12C 1709 + 0 1709 14645 104 5 4 684 10 119 16 0 1 183 1 0 5 3 1 107 0 4 185 0 102 194 chain 5113 chr6 170805979 + 152856667 152856741 MADE1 96 + 0 96 85088 30 2 18 13 0 6 29 chain 8030 chr6 170805979 + 152876680 152876815 L1PB1 5432 + 5303 5427 74805 24 2 0 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 14 2 0 5 1 0 4 chain 287070 chr6 170805979 + 152882744 152886192 L1P2 5180 + 65 3544 7228 80 7 6 45 9 8 43 1 0 155 6 23 36 1 0 50 0 10 9 0 1 256 1 0 6 1 0 184 1 5 63 0 1 408 0 1 935 0 4 43 0 1 21 2 0 100 0 1 617 1 0 367 chain 40076 chr6 170805979 + 152886192 152886651 L1PA6 6164 + 5691 6153 34604 263 0 3 196 chain 35962 chr6 170805979 + 152909733 152910246 MLT2A2 560 + 0 554 37434 169 7 6 8 1 0 125 10 42 56 0 11 84 1 0 4 5 6 43 chain 2947 chr6 170805979 + 152916377 152916576 MER67C 710 + 9 189 100430 28 148 129 23 chain 38237 chr6 170805979 + 152916597 152917535 L1PB1 5432 + 4841 5422 35884 34 0 1 138 0 2 87 7 0 11 1 0 24 1 0 9 1 0 11 4 0 10 324 2 49 1 0 17 1 0 44 1 0 13 31 18 16 25 20 23 1 0 21 1 0 13 1 0 18 chain 3861 chr6 170805979 + 152988569 152988631 MLT2D 439 + 54 118 92406 30 5 7 27 chain 53510 chr6 170805979 + 153014842 153015652 Tigger1 2417 + 1499 2297 28395 69 1 4 177 51 52 101 0 3 133 0 2 71 1 2 43 4 0 87 6 8 22 30 10 14 chain 8073 chr6 170805979 + 153064230 153064339 L1MA2 4263 + 3 114 74688 19 2 1 75 0 3 13 chain 78790 chr6 170805979 + 153067064 153068172 L1MA2 4263 + 2175 3277 21922 22 12 7 24 1 0 82 0 3 18 1 0 201 2 1 20 0 4 87 4 1 17 0 1 34 5 0 184 33 34 60 0 2 280 1 0 20 chain 5004 chr6 170805979 + 153090722 153090777 Tigger7 736 + 170 225 85645 55 chain 531801 chr6 170805979 + 153110644 153117085 L1PA7 6471 + 5 6468 1762 220 1 16 10 16 1 152 4 0 179 4 6 600 0 8 86 0 2 249 1 10 89 4 6 49 0 1 115 0 1 421 4 5 117 0 1 137 5 1 146 4 0 191 5 6 280 0 1 225 1 0 167 1 0 154 0 1 349 0 2 468 2 1 296 0 3 41 0 4 328 3 5 342 0 1 122 2 1 281 2 1 558 3 0 7 chain 119385 chr6 170805979 + 153133440 153134820 LTR12C 1709 + 0 1709 15632 650 0 278 47 0 1 95 0 47 106 0 4 137 1 0 344 chain 15304 chr6 170805979 + 153165028 153165244 L1PA8 5853 + 5642 5853 61910 40 18 15 43 2 1 19 1 0 93 chain 3063 chr6 170805979 + 153225236 153225272 MER119 576 + 538 574 99193 36 chain 20528 chr6 170805979 + 153300026 153300256 L1PA7 6471 + 5767 5998 55746 209 0 1 21 chain 32162 chr6 170805979 + 153336004 153336394 THE1B-int 1605 + 1181 1598 40222 165 5 32 220 chain 131087 chr6 170805979 + 153346554 153347995 L1PA3long 6157 + 4709 6149 13917 900 0 1 43 2 0 496 chain 153502 chr6 170805979 + 153354612 153356805 MER61-int 3695 + 1115 3303 12148 7 0 5 38 0 3 64 1 0 64 46 20 182 1 0 66 0 1 561 9 6 51 0 29 15 7 1 102 14 13 77 0 1 108 8 15 158 1 4 59 1 0 68 0 1 14 27 23 17 56 57 206 1 0 11 20 9 5 1 0 127 chain 10536 chr6 170805979 + 153357877 153358084 HSMAR2 1300 + 720 919 69347 52 9 11 9 14 0 34 14 15 61 2 5 12 chain 9149 chr6 170805979 + 153384999 153385114 MLT1B 390 + 247 362 72237 115 chain 35383 chr6 170805979 + 153417715 153418168 MER4A1 472 + 0 472 37780 224 0 21 186 2 0 41 chain 7322 chr6 170805979 + 153420440 153420526 5S 121 + 3 89 76592 86 chain 36779 chr6 170805979 + 153450565 153451027 LTR2 463 + 1 463 36899 75 1 0 270 28 29 88 chain 24266 chr6 170805979 + 153452490 153452851 THE1D 372 + 0 372 50394 57 4 6 97 32 34 110 0 7 61 chain 18072 chr6 170805979 + 153523019 153523314 THE1B 368 + 0 354 58591 35 0 5 67 24 79 12 3 6 18 7 4 4 1 0 124 chain 25513 chr6 170805979 + 153529897 153530256 THE1B 368 + 0 368 48463 44 0 15 104 6 5 25 4 1 77 1 0 22 1 0 75 chain 28486 chr6 170805979 + 153576209 153576508 AluYk12 309 + 0 299 44147 299 chain 11344 chr6 170805979 + 153609693 153609858 L1PA8 5853 + 5691 5853 68010 5 1 0 44 2 1 16 4 3 93 chain 34382 chr6 170805979 + 153663876 153664347 MER4A1 472 + 0 472 38444 225 8 30 10 27 6 201 chain 4500 chr6 170805979 + 153681449 153681504 U6 107 + 3 58 88322 55 chain 3868 chr6 170805979 + 153682122 153682166 L1PA15 4387 + 79 123 92369 44 chain 53547 chr6 170805979 + 153730658 153731349 L1P3 4156 + 3443 4139 28378 51 1 0 47 0 4 261 0 4 188 1 2 107 2 0 7 2 1 24 chain 104529 chr6 170805979 + 153762943 153764468 L1PB3 3668 + 2061 3613 17755 46 3 0 109 3 4 325 0 45 77 4 3 160 0 4 5 1 2 147 0 2 8 3 0 292 1 0 82 20 19 85 17 6 19 8 7 20 3 1 28 11 12 12 3 2 12 8 5 13 chain 168337 chr6 170805979 + 153784062 153786159 L1PA8A 6298 + 4179 6289 11202 178 0 1 467 5 4 349 0 1 163 0 10 51 1 2 84 1 4 299 1 3 181 2 0 102 1 0 14 6 5 192 chain 12389 chr6 170805979 + 153787436 153787680 MER61A 341 + 106 340 66154 48 71 61 9 0 1 15 1 0 100 chain 55952 chr6 170805979 + 153821383 153822198 LTR12_ 688 + 0 688 27576 84 25 0 58 2 3 308 103 0 235 chain 233831 chr6 170805979 + 153867109 153870023 L1PA7 6471 + 3345 6460 8640 48 0 1 90 3 2 76 0 183 79 0 1 36 3 2 437 0 3 526 0 1 5 0 6 205 5 9 49 0 31 288 0 1 101 39 0 96 0 3 544 0 1 80 1 0 15 0 8 188 chain 3270 chr6 170805979 + 153896132 153896169 Zaphod 902 + 579 616 97299 37 chain 42592 chr6 170805979 + 153904784 153905366 L1MA2 4263 + 806 1411 33007 246 0 1 89 35 55 199 0 1 5 0 1 8 chain 119407 chr6 170805979 + 153907196 153908744 THE1A-int 1579 + 0 1570 15628 304 0 7 257 3 1 48 1 2 52 1 0 5 0 1 403 4 1 72 0 7 56 0 9 58 10 12 20 0 1 254 chain 7851 chr6 170805979 + 153922729 153922817 LTR7Y 441 + 1 89 75250 88 chain 234621 chr6 170805979 + 153922817 153925525 HERVH-int 3825 + 877 3825 8611 564 0 1 239 8 35 1354 9 11 39 8 218 262 0 2 209 2 0 14 chain 31199 chr6 170805979 + 153926775 153927203 LTR7B 505 + 0 503 40977 105 0 10 60 0 38 12 3 27 18 0 1 7 0 2 42 0 1 42 1 0 23 0 1 52 14 13 49 chain 13536 chr6 170805979 + 153931674 153931941 MLT2B4 540 + 0 505 64271 97 43 285 8 1 0 70 0 8 15 16 6 8 1 0 8 chain 148324 chr6 170805979 + 153954915 153956711 L1PA7 6471 + 3774 5568 12464 315 16 8 380 0 1 162 0 14 17 10 1 896 chain 27233 chr6 170805979 + 153957345 153957804 MER51B 395 + 0 395 45923 76 75 13 96 1 0 44 15 14 152 chain 32827 chr6 170805979 + 153959926 153960442 MER41A 554 + 0 533 39647 151 7 13 16 37 38 25 8 11 5 3 0 106 2 6 56 0 1 40 0 5 60 chain 55899 chr6 170805979 + 153979013 153979693 L1P1 4361 + 89 760 27591 393 1 0 92 1 0 118 7 0 68 chain 4682 chr6 170805979 + 153995290 153995627 MLT2D 439 + 75 437 87371 18 5 7 16 0 3 15 247 267 36 chain 97480 chr6 170805979 + 154006183 154007598 L1MA2 4263 + 1720 3127 18594 157 1 2 5 1 0 41 1 0 48 23 6 15 4 7 217 14 19 21 3 4 12 0 2 5 2 0 363 3 0 11 0 1 4 1 0 108 7 8 54 4 6 4 1 0 67 12 14 206 chain 60835 chr6 170805979 + 154051565 154052342 L1PA8 5853 + 5081 5853 26148 63 0 1 419 1 0 44 2 0 74 1 0 12 1 0 46 2 1 112 chain 511241 chr6 170805979 + 154172169 154178296 L1PA6 6164 + 0 6162 2698 449 19 0 118 1 0 135 5 4 88 0 17 443 1 0 958 0 2 1001 5 2 57 0 5 1083 0 4 219 0 8 24 9 11 43 0 20 180 0 2 1289 chain 58185 chr6 170805979 + 154192513 154193498 L1PB1 5432 + 4469 5427 26909 160 7 1 74 29 20 67 7 15 80 2 0 113 1 0 11 0 2 91 16 14 21 1 0 6 1 0 14 9 4 6 2 0 68 1 0 32 10 15 13 1 0 4 23 12 15 2 0 5 1 0 4 13 24 10 1 0 21 1 0 13 4 0 18 2 0 5 chain 14355 chr6 170805979 + 154286170 154286360 L1PA8 5853 + 5670 5853 63103 9 1 0 9 1 0 10 3 0 42 2 1 19 1 0 93 chain 28045 chr6 170805979 + 154307134 154307503 THE1B 368 + 0 368 44792 15 2 0 25 0 5 123 1 0 4 1 0 4 0 1 114 3 0 77 chain 101632 chr6 170805979 + 154326285 154327640 L1PA11 4918 + 3236 4567 18111 147 0 4 101 5 6 834 5 0 65 2 1 13 5 0 68 2 0 13 1 0 23 42 28 15 1 0 13 chain 5562 chr6 170805979 + 154330910 154331021 MER50 708 + 9 126 82972 40 32 34 21 0 4 18 chain 29852 chr6 170805979 + 154333166 154333565 MLT2A1 477 + 0 399 42185 169 1 5 5 0 2 101 1 0 46 0 1 42 2 0 14 4 0 14 chain 13078 chr6 170805979 + 154338960 154339202 LTR23 429 + 133 390 64970 41 25 41 7 0 2 56 1 0 68 26 24 18 chain 45224 chr6 170805979 + 154343697 154344318 LTR9B 643 + 17 643 31467 98 0 1 71 0 1 13 8 9 219 21 22 143 3 4 45 chain 22712 chr6 170805979 + 154364453 154364719 AluSg7 307 + 40 307 52813 91 0 1 175 chain 7417 chr6 170805979 + 154420140 154420371 L1MA8 2339 + 1989 2187 76352 16 5 4 70 113 81 27 chain 3035 chr6 170805979 + 154544622 154544674 MER5A 189 + 138 189 99455 7 0 1 21 6 4 18 chain 9479 chr6 170805979 + 154633411 154633527 MLT1A0 366 + 34 150 71524 116 chain 17191 chr6 170805979 + 154640868 154641167 Tigger3b 1229 + 712 1013 59580 24 5 9 25 5 6 47 22 19 99 1 0 26 7 8 38 chain 31681 chr6 170805979 + 154656090 154656531 MLT2A1 477 + 0 475 40594 142 0 1 26 1 5 150 1 0 52 29 59 40 chain 43825 chr6 170805979 + 154679303 154680178 MER41A 554 + 0 554 32235 93 0 1 266 323 0 69 1 2 123 chain 144920 chr6 170805979 + 154686666 154688265 SVA_D 2077 + 25 2075 12695 517 0 40 22 0 1 156 0 40 77 0 183 116 0 90 80 1 98 630 chain 13761 chr6 170805979 + 154808338 154808575 MER30 238 + 0 238 63934 13 31 23 73 4 0 15 1 14 100 chain 10481 chr6 170805979 + 154812306 154812485 Tigger1 2417 + 2208 2387 69449 11 0 1 28 3 0 78 26 28 33 chain 3273 chr6 170805979 + 154904093 154904143 MADE1 96 + 30 96 97253 12 1 17 37 chain 23921 chr6 170805979 + 155092587 155092866 AluSp 311 + 14 293 50911 279 chain 30765 chr6 170805979 + 155268632 155268965 SVA_C 1631 + 1298 1631 41336 333 chain 106613 chr6 170805979 + 155355450 155356672 L1PA4 6152 + 4463 6152 17480 171 1 7 13 0 1 4 1 0 33 0 460 762 0 1 237 chain 126095 chr6 170805979 + 155362874 155364401 LTR12C 1709 + 0 1631 14536 37 0 4 204 17 0 219 13 11 245 0 118 274 1 0 4 6 4 104 0 4 403 chain 14829 chr6 170805979 + 155376211 155376434 MER30 238 + 0 238 62479 107 4 19 21 7 10 42 3 0 39 chain 30456 chr6 170805979 + 155502019 155502359 L1PA3long 6157 + 5817 6157 41624 340 chain 25631 chr6 170805979 + 155576528 155576892 THE1C 375 + 2 363 48266 107 1 2 14 9 6 52 12 12 154 1 0 14 chain 36782 chr6 170805979 + 155667819 155668361 MLT2A2 560 + 1 560 36898 167 72 71 114 0 7 42 0 11 147 chain 36086 chr6 170805979 + 155673757 155674175 L1PA4 6152 + 5731 6143 37345 202 6 0 210 chain 23026 chr6 170805979 + 155703362 155703716 L1PA16 3655 + 2029 2401 52320 143 43 44 30 0 1 32 0 16 106 chain 227149 chr6 170805979 + 155748286 155751196 L1P3 4156 + 0 2961 8839 125 0 2 116 20 19 58 1 0 80 9 0 9 6 5 232 1 0 90 0 2 36 0 4 154 0 1 442 10 9 158 2 0 213 0 1 16 1 2 28 0 62 263 0 2 56 24 0 12 0 12 139 1 3 166 0 4 108 2 1 64 0 4 51 8 0 29 0 1 64 0 2 116 chain 158087 chr6 170805979 + 155751760 155753673 L1PA7 6471 + 4551 6470 11867 122 1 5 307 0 1 630 1 4 640 2 0 47 13 13 150 chain 4779 chr6 170805979 + 155762824 155762900 MADE1 96 + 1 94 86798 41 1 17 9 1 2 24 chain 25622 chr6 170805979 + 155798852 155799228 THE1A 353 + 0 353 48280 110 1 0 43 24 1 45 2 0 5 8 10 95 0 1 43 chain 31962 chr6 170805979 + 155901506 155901957 MLT2A2 560 + 0 560 40367 180 1 0 115 12 121 39 7 8 97 chain 27709 chr6 170805979 + 156012568 156012902 L1PA3long 6157 + 3587 3900 45302 216 20 0 89 1 0 8 chain 566239 chr6 170805979 + 156034135 156040165 L1HS 6032 + 0 6032 59 74 0 1 1034 0 1 4922 chain 5350 chr6 170805979 + 156127060 156127149 MER20 218 + 20 97 83954 10 11 0 58 1 0 9 chain 6679 chr6 170805979 + 156142709 156142790 MLT1A0 366 + 217 299 78708 26 0 1 55 chain 22056 chr6 170805979 + 156154169 156154435 AluY 311 + 29 301 53755 103 0 1 36 1 6 126 chain 4537 chr6 170805979 + 156161925 156162012 MLT1C 463 + 67 161 88118 51 21 28 15 chain 9974 chr6 170805979 + 156227355 156227505 L1MA2 4263 + 3972 4114 70474 86 14 7 40 1 0 9 chain 3669 chr6 170805979 + 156272861 156272917 MER96B 391 - 101 157 93841 17 2 0 7 0 2 30 chain 25145 chr6 170805979 + 156277718 156278065 THE1B 368 + 13 368 49041 95 13 13 51 3 2 100 0 1 31 5 13 49 chain 11372 chr6 170805979 + 156280476 156280630 L1PA8 5853 + 5701 5853 67967 39 2 1 19 1 0 93 chain 555434 chr6 170805979 + 156361254 156367276 L1PA2 6032 + 3 6032 385 704 0 7 5318 chain 7924 chr6 170805979 + 156476397 156476653 MLT1A1 405 + 70 363 75063 39 116 154 14 21 20 66 chain 16955 chr6 170805979 + 156477740 156477997 L1PA8 5853 + 5601 5853 59856 7 2 0 71 1 0 57 9 8 16 21 20 73 chain 160879 chr6 170805979 + 156481875 156483634 L1PA3long 6157 + 4394 6157 11690 894 0 4 865 chain 117603 chr6 170805979 + 156490009 156491521 THE1C-int 1605 + 16 1593 15956 94 0 54 281 9 16 13 1 0 42 3 2 114 0 3 42 1 0 475 1 2 15 0 1 254 0 1 99 0 1 68 chain 3422 chr6 170805979 + 156524276 156524315 MADE1 96 + 57 96 95886 39 chain 71952 chr6 170805979 + 156583920 156584979 L1MA3 4352 + 3221 4277 23556 371 0 1 337 3 7 89 0 4 60 98 89 23 9 8 43 8 6 18 chain 537720 chr6 170805979 + 156604704 156610770 L1PA4 6152 + 6 6083 1468 361 0 1 1959 0 1 191 0 1 247 0 2 499 0 3 222 0 4 2196 1 0 390 chain 435265 chr6 170805979 + 156663514 156669029 L1P2 5180 + 2 5178 4662 143 54 55 47 13 12 256 1 0 272 1 0 4 2 1 98 7 11 386 1 4 431 1 0 1341 0 1 110 1 0 124 324 0 298 12 0 99 3 0 1395 1 0 46 1 0 38 1 0 4 chain 132885 chr6 170805979 + 156669664 156671179 SVA_D 2077 + 63 2076 13747 401 0 156 300 1 38 76 2 4 25 0 1 42 1 304 28 1 0 638 chain 32462 chr6 170805979 + 156671181 156671550 L1PA6 6164 + 5782 6151 39979 369 chain 12049 chr6 170805979 + 156838577 156838709 L1PA6 6164 + 6017 6149 66760 132 chain 25040 chr6 170805979 + 156906280 156906574 AluSp 311 + 15 311 49210 139 0 2 155 chain 4566 chr6 170805979 + 157229614 157229677 MER53 195 - 122 195 87989 49 1 11 13 chain 212589 chr6 170805979 + 157340878 157343324 L1PA5 6144 + 3696 6142 9246 645 0 4 1250 0 1 539 5 0 7 chain 4539 chr6 170805979 + 157369750 157369808 MER73 639 + 578 639 88107 5 0 3 53 chain 23390 chr6 170805979 + 157421219 157421517 AluYc3 301 + 2 296 51780 111 2 0 8 12 10 165 chain 28805 chr6 170805979 + 157589401 157589747 THE1C 375 + 0 375 43619 157 1 30 188 chain 113117 chr6 170805979 + 157589764 157591273 THE1C-int 1605 + 18 1605 16661 98 1 55 188 0 1 17 0 7 26 0 1 33 10 17 242 0 1 20 11 20 263 13 0 143 0 1 39 5 6 29 2 1 148 9 8 91 0 11 121 chain 45681 chr6 170805979 + 157709729 157710282 MER41A 554 + 0 554 31219 427 0 1 126 chain 125892 chr6 170805979 + 157738646 157740100 L1PA7 6471 + 5007 6461 14576 382 0 2 230 1 0 683 1 0 157 chain 5481 chr6 170805979 + 157759350 157759411 MER63B 433 + 46 107 83310 61 chain 31058 chr6 170805979 + 157815677 157816037 L1PA7 6471 + 6099 6470 41086 234 0 11 126 chain 20318 chr6 170805979 + 157871444 157871679 L1PA6 6164 + 5921 6156 55990 235 chain 14302 chr6 170805979 + 157930494 157930787 MER1B 344 + 61 339 63193 15 44 19 73 27 36 64 16 17 54 chain 147372 chr6 170805979 + 157949010 157951213 L1MA2 4263 + 1861 4114 12521 25 0 3 81 1 0 145 18 9 46 0 3 61 0 5 6 20 10 57 1 0 44 0 12 13 24 50 12 0 4 64 0 1 6 31 25 10 0 4 87 4 0 6 7 8 92 1 3 16 0 1 121 7 15 73 1 13 113 11 14 43 0 2 12 0 4 397 9 4 4 0 1 38 5 8 30 2 1 85 5 9 49 3 0 152 9 7 93 7 0 11 0 1 35 1 0 9 chain 2640 chr6 170805979 + 157971606 157971917 L1MC5 759 + 366 717 102785 23 204 247 12 38 39 22 4 0 8 chain 47047 chr6 170805979 + 158004148 158004773 MER41B 635 + 0 635 30637 127 1 2 246 1 0 23 5 10 139 1 6 82 chain 70908 chr6 170805979 + 158127255 158128017 SVA_F 1814 + 1005 1814 23778 133 1 49 617 1 0 10 chain 3313 chr6 170805979 + 158244882 158244920 MLT1A 405 + 334 372 96897 38 chain 31475 chr6 170805979 + 158343884 158344341 LTR7B 505 + 0 496 40752 108 0 10 57 0 38 12 3 27 28 29 0 82 1 0 79 14 13 26 2 0 16 chain 10155 chr6 170805979 + 158397466 158397669 MER30 238 + 54 238 70097 40 15 32 32 1 0 4 40 6 4 1 0 66 chain 6754 chr6 170805979 + 158415660 158415762 Tigger3b 1229 + 317 420 78464 11 7 0 14 5 13 65 chain 4104 chr6 170805979 + 158517632 158517678 MER39 703 + 543 589 90751 46 chain 88501 chr6 170805979 + 158526270 158527420 L1PA10 4194 + 2985 4159 19947 69 1 0 4 7 9 61 10 9 191 0 2 145 0 3 135 0 7 142 1 0 58 0 10 71 0 3 30 0 1 67 0 3 111 3 0 34 1 0 9 chain 3331 chr6 170805979 + 158553809 158553847 MER6B 211 - 11 49 96752 38 chain 6154 chr6 170805979 + 158579288 158579439 L1MB3 1562 + 1125 1275 80522 42 55 51 30 1 4 23 chain 6618 chr6 170805979 + 158630512 158630695 MER47A 366 + 176 366 78908 44 18 27 11 46 45 12 6 5 46 chain 109143 chr6 170805979 + 158675950 158677154 L1PA4 6152 + 4523 5739 17159 55 0 12 1149 chain 25951 chr6 170805979 + 158691993 158692286 AluY 311 + 18 311 47788 293 chain 41930 chr6 170805979 + 158729894 158730475 LTR10E 629 + 38 629 33410 14 0 1 34 0 4 71 4 6 107 0 3 18 5 4 70 7 11 187 2 0 55 1 0 6 chain 21331 chr6 170805979 + 158732993 158734179 LTR10E 629 + 0 568 54724 18 30 37 4 0 1 104 4 6 64 4 5 57 2 1 36 803 177 34 4 3 4 1 0 17 chain 3166 chr6 170805979 + 158734191 158734225 LTR10E 629 + 589 623 98234 34 chain 9707 chr6 170805979 + 158759841 158760001 MER30 238 + 50 238 71032 43 3 7 7 4 0 10 1 21 14 0 6 38 0 3 34 1 0 5 chain 30536 chr6 170805979 + 158867980 158868368 LTR12F 595 + 0 584 41536 72 0 191 60 1 0 41 0 1 77 0 5 137 chain 8910 chr6 170805979 + 158871482 158871599 MER30 238 + 94 234 72761 24 0 20 52 0 3 41 chain 186061 chr6 170805979 + 158950318 158952548 L1PA7 6471 + 4213 6468 10291 456 0 8 71 0 1 250 0 11 68 1 2 534 0 3 650 18 17 24 18 19 124 0 1 16 chain 31272 chr6 170805979 + 158989796 158990238 MLT2A1 477 + 0 477 40919 70 1 3 95 5 2 9 0 1 23 0 1 181 4 0 14 11 45 23 0 4 6 chain 29077 chr6 170805979 + 159106744 159107161 MER51E 476 + 0 476 43225 137 0 35 146 4 0 49 24 52 57 chain 40056 chr6 170805979 + 159148520 159149037 MLT2A2 560 + 0 560 34618 307 0 32 60 3 14 147 chain 63202 chr6 170805979 + 159345614 159346396 L1PA8A 6298 + 5163 5947 25579 4 1 0 321 0 3 76 7 6 51 0 6 231 5 0 86 chain 78356 chr6 170805979 + 159402898 159403756 L1PA3long 6157 + 5301 6157 22013 851 2 0 5 chain 117713 chr6 170805979 + 159406773 159408172 SVA_B 1603 + 52 1471 15936 53 5 6 54 5 8 5 3 0 206 0 1 146 0 40 281 1 0 12 1 0 15 4 0 42 4 0 42 4 0 13 1 0 97 7 0 398 chain 112631 chr6 170805979 + 159453145 159454544 L1PA8 5853 + 4442 5853 16730 370 0 1 180 0 1 6 4 0 9 1 3 41 1 0 4 0 1 504 1 0 47 2 0 69 2 1 8 3 4 49 2 1 19 1 0 52 6 23 18 chain 3322 chr6 170805979 + 159468188 159468225 tRNA-Thr-ACA 39 + 0 37 96837 37 chain 28757 chr6 170805979 + 159497171 159497650 L1PA15 4387 + 3890 4351 43697 42 1 0 155 0 1 12 6 5 25 1 0 55 1 0 22 4 0 9 1 0 36 29 26 36 3 1 12 6 1 23 chain 277733 chr6 170805979 + 159655216 159659003 L1PBa1 4058 + 262 4040 7497 101 1 2 59 24 14 172 13 36 217 1 3 162 1 2 72 1 0 79 0 2 22 6 23 365 0 1 8 5 2 63 1 0 285 0 5 492 50 26 42 14 18 63 0 8 47 0 6 74 0 1 139 0 5 329 5 0 53 8 5 167 4 3 83 0 1 31 10 1 115 1 0 6 14 13 16 1 0 41 2 0 83 0 7 18 3 1 21 2 1 7 13 0 15 2 0 19 2 1 4 1 0 7 3 0 18 22 18 7 1 0 3 1 0 10 2 1 15 1 0 42 chain 70652 chr6 170805979 + 159660451 159661246 SVA_D 2077 + 1236 2077 23832 72 0 49 31 0 1 4 10 8 49 1 0 621 1 0 6 chain 50106 chr6 170805979 + 159662002 159662659 LTR12_ 688 + 0 688 29520 142 3 4 41 1 0 232 12 13 100 3 36 8 3 0 112 chain 16271 chr6 170805979 + 159663663 159663975 L1PB1 5432 + 5109 5391 60651 5 1 0 24 1 0 9 16 11 11 2 0 51 2 1 16 5 4 39 1 0 16 3 0 17 9 0 14 10 7 12 2 0 24 1 0 21 chain 541060 chr6 170805979 + 159670614 159676743 L1PA5 6144 + 3 6132 1276 196 0 1 321 4 0 328 0 1 1399 4 0 57 2 0 472 0 2 544 7 9 1966 0 3 75 1 0 704 0 2 49 chain 538488 chr6 170805979 + 159704146 159710266 L1PA5 6144 + 0 6132 1425 921 0 4 521 0 4 1726 1 0 36 1 4 466 1 0 1034 0 4 905 7 7 302 3 6 158 4 0 34 chain 2989 chr6 170805979 + 159769462 159769495 MLT1B 390 + 295 328 99968 33 chain 6747 chr6 170805979 + 159841519 159841597 LTR12F 595 + 402 480 78489 78 chain 4367 chr6 170805979 + 159845633 159845692 MLT1C 463 + 63 123 89071 42 2 3 15 chain 122276 chr6 170805979 + 159848087 159849962 THE1B-int 1605 + 0 1605 15149 21 0 7 404 11 38 265 360 57 89 1 0 724 chain 23259 chr6 170805979 + 159849962 159850337 THE1B 368 + 0 368 51986 15 2 0 32 0 1 33 1 2 9 1 0 10 13 15 52 31 24 100 1 0 75 chain 24776 chr6 170805979 + 159864583 159864888 L1PA7 6471 + 6160 6464 49622 152 4 3 149 chain 3295 chr6 170805979 + 159872245 159872294 MLT1N2 510 + 410 457 97063 42 2 0 5 chain 27232 chr6 170805979 + 159990227 159990588 THE1C 375 + 0 375 45925 37 0 5 165 11 21 122 1 0 25 chain 32091 chr6 170805979 + 160021244 160021603 L1PA4 6152 + 5791 6151 40281 26 0 1 333 chain 14843 chr6 170805979 + 160041400 160041588 L1PA8A 6298 + 6098 6289 62458 52 0 2 26 2 3 108 chain 100402 chr6 170805979 + 160052217 160053420 L1PA6 6164 + 4285 6161 18249 81 0 2 425 1 2 192 5 6 197 5 668 144 1 9 12 2 0 138 chain 65047 chr6 170805979 + 160165300 160166030 L1PA4 6152 + 4602 5333 25179 375 0 1 355 chain 377435 chr6 170805979 + 160183308 160187534 L1PA4 6152 + 1915 6151 5525 1039 0 1 1612 0 5 791 0 1 425 1 3 209 0 1 149 chain 12748 chr6 170805979 + 160195030 160195239 L1MA5A 2387 + 128 325 65528 28 7 0 25 15 12 5 1 0 4 1 0 123 chain 46446 chr6 170805979 + 160208318 160215222 MER4E1 777 + 12 759 30864 5 2 0 8 2 0 57 0 2 122 0 1 126 0 19 82 6169 0 108 15 9 208 chain 9655 chr6 170805979 + 160225666 160225788 MER57B1 401 + 7 129 71152 122 chain 28675 chr6 170805979 + 160228650 160229043 LTR7 482 + 0 476 43838 101 16 66 57 5 37 46 0 1 168 chain 234655 chr6 170805979 + 160229051 160232357 HERVH-int 3825 + 0 3825 8609 336 0 19 10 239 165 15 5 6 7 0 208 13 1 0 450 15 0 201 9 0 170 1 0 179 0 1 122 0 1 376 13 1 8 0 11 520 0 367 57 52 52 248 0 23 259 chain 25186 chr6 170805979 + 160233925 160234314 LTR7 482 + 0 474 48973 101 15 14 13 1 52 44 5 37 24 20 22 59 0 1 107 chain 146233 chr6 170805979 + 160235501 160237609 MER41-int 2638 + 463 2590 12597 215 2 0 49 0 2 25 3 19 26 24 38 138 9 6 48 0 1 48 2 4 50 1 0 161 9 13 9 1 0 7 2 1 66 6 0 42 0 2 4 1 0 151 1 0 74 1 0 102 11 12 68 11 7 25 2 0 215 60 71 62 0 2 149 14 0 76 1 2 137 chain 40920 chr6 170805979 + 160237666 160238218 MER41A 554 + 2 554 34017 85 5 6 226 1 0 5 7 6 100 5 6 118 chain 4066 chr6 170805979 + 160248317 160248363 MLT1A 405 + 283 329 90984 46 chain 3005 chr6 170805979 + 160259605 160259652 MER21A 919 + 88 147 99802 14 5 17 28 chain 370751 chr6 170805979 + 160513389 160518074 L1PA7 6471 + 0 6468 5636 677 12 1801 58 1 2 100 22 7 131 0 4 69 2 1 250 0 4 240 14 15 211 0 3 191 18 19 36 1 6 178 1 3 485 15 16 166 0 4 71 0 1 110 0 6 119 7 8 27 28 1 601 0 3 22 4 8 482 0 1 324 5 0 7 chain 98911 chr6 170805979 + 160529017 160530258 L1PA7 6471 + 1481 2719 18422 501 9 11 357 0 1 134 1 0 70 16 18 64 7 0 82 chain 8975 chr6 170805979 + 160530258 160530359 L1PA7 6471 + 5292 5393 72413 101 chain 19218 chr6 170805979 + 160530359 160530591 L1PA7 6471 + 5394 5626 57328 232 chain 37888 chr6 170805979 + 160530591 160531047 L1PA7 6471 + 5629 6086 36151 40 1 0 4 0 1 31 0 1 380 chain 29631 chr6 170805979 + 160531047 160531400 L1PA7 6471 + 6090 6444 42453 266 0 1 87 chain 511010 chr6 170805979 + 160564531 160570646 L1PA5 6144 + 0 6141 2714 120 1 15 114 7 8 144 27 0 608 0 1 159 9 0 65 33 34 165 2 0 255 0 40 585 3 1 1203 2 7 71 0 1 84 1 2 260 1 3 379 36 41 292 0 1 636 2 0 841 4 0 6 chain 186936 chr6 170805979 + 160672400 160675246 L1PREC2 3366 + 136 2940 10255 29 6 5 10 2 0 6 18 23 21 3 2 15 1 0 11 2 0 28 1 0 114 1 0 68 1 0 43 0 4 286 4 3 311 0 4 34 56 57 98 19 19 22 13 11 313 5 6 87 5 6 157 1 0 75 18 19 325 9 10 66 1 4 55 0 2 220 7 6 42 13 11 35 10 9 42 1 0 4 7 0 6 61 28 14 7 4 15 3 1 14 1 0 4 chain 7239 chr6 170805979 + 160769701 160769869 L1MA5A 2387 + 2168 2306 76838 47 54 25 56 1 0 10 chain 156200 chr6 170805979 + 160777229 160779127 HERVH-int 3825 + 1877 3825 11988 73 0 35 15 0 2 18 0 3 63 4 9 921 1 0 50 0 2 621 0 4 132 chain 26295 chr6 170805979 + 160787326 160787776 MER4E 760 + 2 430 47277 16 1 0 133 41 44 28 15 11 30 35 13 92 0 2 59 chain 49015 chr6 170805979 + 160788117 160788698 LTR10C 591 + 3 591 29946 505 0 2 13 6 11 57 chain 39088 chr6 170805979 + 160799275 160799800 MER41-int 2638 + 1947 2477 35296 23 0 1 4 1 0 52 0 1 4 1 0 193 3 5 46 0 1 167 14 16 17 chain 21966 chr6 170805979 + 160801156 160801505 MER57-int 2662 + 97 449 53889 11 1 0 64 17 20 51 3 5 65 2 0 46 5 6 84 chain 82286 chr6 170805979 + 160820336 160821402 MER11A 1151 + 0 1151 21182 55 0 99 140 4 0 224 0 5 161 0 1 125 0 26 24 44 1 56 0 1 18 6 5 30 0 1 179 chain 17893 chr6 170805979 + 160822645 160822847 L1PA5 6144 + 5928 6130 58766 202 chain 11107 chr6 170805979 + 160859373 160859607 L1MA5A 2387 + 2047 2247 68398 22 1 0 39 1 0 49 2 0 29 37 31 13 24 0 17 chain 26104 chr6 170805979 + 160875374 160875678 AluY 311 + 3 308 47566 129 0 1 175 chain 25067 chr6 170805979 + 160882979 160883398 MER4A1 472 + 54 472 49170 131 16 13 139 72 74 61 chain 181616 chr6 170805979 + 160886394 160889216 MER4-int 2692 + 74 2692 10520 25 2 0 6 1 0 9 0 2 480 0 1 27 8 10 80 2 3 7 0 1 21 0 1 17 1 5 173 2 0 142 1 7 14 1 0 88 0 3 105 19 18 73 20 42 31 2 3 83 0 4 22 0 1 59 321 0 115 1 3 136 4 3 124 0 1 51 12 17 13 1 2 86 0 51 23 13 2 7 0 14 280 0 10 103 0 3 11 chain 32382 chr6 170805979 + 160920923 160921350 MER83 447 + 3 404 40054 102 0 1 135 20 0 6 7 0 157 chain 6193 chr6 170805979 + 161036820 161036946 Tigger4a 237 + 71 215 80383 40 8 0 10 16 24 26 2 20 24 chain 10072 chr6 170805979 + 161154739 161154869 MER75 514 + 188 321 70246 115 0 3 15 chain 44507 chr6 170805979 + 161156638 161157146 MER9a2 513 + 0 513 31823 18 0 1 426 0 4 64 chain 4763 chr6 170805979 + 161190239 161190394 L1MC2 1988 + 1848 1988 86900 45 80 65 30 chain 164095 chr6 170805979 + 161211748 161213905 MER4-int 2692 + 164 2674 11476 178 1 0 5 0 3 106 5 4 258 0 1 43 0 22 326 1 0 10 0 1 72 0 3 88 0 311 52 1 2 113 2 1 19 1 0 104 4 6 121 0 1 123 0 1 132 10 6 9 1 2 172 4 3 46 0 4 17 10 22 123 chain 32205 chr6 170805979 + 161213940 161214377 MER4A1 472 + 0 468 40184 15 5 8 10 1 0 5 0 4 178 4 28 109 0 1 110 chain 46728 chr6 170805979 + 161224869 161225515 LTR10F 562 + 0 562 30758 218 32 1 12 25 0 30 28 0 301 chain 2077 chr6 170805979 + 161225131 161225156 LTR10F 562 + 175 200 76867 25 chain 21282 chr6 170805979 + 161238650 161238996 THE1C 375 + 0 350 54790 68 32 0 8 1 33 26 1 5 42 16 16 152 chain 55997 chr6 170805979 + 161247505 161249023 L1PA13 3608 + 2671 3548 27565 90 2 0 94 334 22 96 0 2 157 2 0 11 303 0 17 1 0 67 13 14 32 2 0 62 1 0 19 6 0 37 1 0 5 2 0 5 0 10 33 10 6 18 1 0 14 29 22 14 1 0 6 7 1 10 1 0 1 2 0 12 chain 56841 chr6 170805979 + 161301562 161302652 MER4E1 777 + 0 777 27312 148 2 0 7 11 10 161 9 10 62 4 1 28 307 0 123 2 1 226 chain 10060 chr6 170805979 + 161328130 161328261 LTR8 732 + 16 171 70281 16 0 9 71 0 15 44 chain 5846 chr6 170805979 + 161329737 161329804 MER4A 717 + 650 717 81710 67 chain 49105 chr6 170805979 + 161331695 161332259 LTR10C 591 + 0 563 29904 510 2 1 52 chain 27254 chr6 170805979 + 161387149 161387527 THE1C 375 + 0 375 45891 169 32 29 177 chain 39229 chr6 170805979 + 161407609 161408082 LTR7C 471 + 0 471 35193 97 3 0 84 5 0 7 1 6 246 0 1 30 chain 31440 chr6 170805979 + 161426249 161426640 MLT2A1 477 + 0 385 40779 168 9 6 199 3 0 12 chain 41451 chr6 170805979 + 161456071 161456620 MLT2A2 560 + 0 558 33707 111 1 0 57 13 12 224 1 12 142 chain 4615 chr6 170805979 + 161588817 161588874 MER53 195 + 6 64 87722 53 0 1 4 chain 40224 chr6 170805979 + 161625085 161625571 L1PA6 6164 + 5677 6160 34504 477 3 0 6 chain 43318 chr6 170805979 + 161711559 161712116 MLT2A2 560 + 1 560 32552 125 0 2 59 2 0 8 0 3 98 0 1 111 0 1 106 5 2 43 chain 14708 chr6 170805979 + 161735176 161735421 Tigger2a 444 + 0 248 62668 13 40 37 52 6 9 107 0 3 27 chain 7978 chr6 170805979 + 161741785 161741940 THE1B 368 + 0 164 74930 47 31 39 22 8 9 47 chain 18775 chr6 170805979 + 161752146 161752395 AluSc 308 + 57 303 57818 146 8 10 69 5 0 21 chain 65258 chr6 170805979 + 161860746 161861592 L1PA8 5853 + 5009 5853 25116 13 5 6 402 0 6 128 2 0 43 3 1 71 1 0 8 7 6 47 2 1 19 1 0 87 1 0 6 chain 158159 chr6 170805979 + 161982231 161983919 L1HS 6032 + 4344 6032 11864 1688 chain 27147 chr6 170805979 + 162069078 162069432 THE1A 353 + 0 353 46051 109 12 11 233 chain 66714 chr6 170805979 + 162073902 162074640 L1PA2 6032 + 5290 6027 24771 405 0 1 185 0 1 135 3 0 10 chain 84687 chr6 170805979 + 162114572 162115504 L1PA3long 6157 + 5224 6156 20687 932 chain 19363 chr6 170805979 + 162187888 162188239 THE1B 368 + 0 348 57168 66 55 57 49 1 0 8 0 1 9 0 2 46 26 19 91 chain 99796 chr6 170805979 + 162208874 162210104 L1PA6 6164 + 4930 6156 18321 258 0 3 172 22 14 285 2 0 25 1 0 412 16 20 37 chain 39524 chr6 170805979 + 162269745 162270471 L1PB1 5432 + 4690 5391 35000 121 3 4 106 1 0 177 6 11 5 1 0 24 1 0 8 1 0 12 7 3 6 2 0 53 23 21 17 111 93 19 1 0 21 chain 10319 chr6 170805979 + 162280918 162281041 L1PA8A 6298 + 5970 6095 69765 117 0 2 6 chain 27207 chr6 170805979 + 162281089 162281426 L1PA7 6471 + 6132 6469 45954 61 0 1 264 1 0 11 chain 39945 chr6 170805979 + 162322790 162323237 L1PA2 6032 + 5588 6029 34701 377 6 0 64 chain 162492 chr6 170805979 + 162338280 162340157 SVA_F 1814 + 0 1814 11579 754 80 0 194 47 14 153 0 49 200 0 1 449 chain 4247 chr6 170805979 + 162339308 162339355 SVA_F 1814 + 1090 1137 58410 47 chain 110691 chr6 170805979 + 162340548 162341885 L1PA7 6471 + 5079 6439 16983 235 9 19 151 0 1 83 0 1 45 2 0 9 0 7 41 0 5 645 0 2 7 1 0 109 chain 24844 chr6 170805979 + 162469383 162469877 L1PB1 5432 + 4997 5427 49523 106 46 16 15 1 0 13 1 0 9 2 0 3 2 0 9 2 0 52 2 1 15 1 0 45 1 0 15 14 1 30 2 0 5 1 0 16 2 0 22 1 0 21 2 1 12 1 0 18 2 0 5 chain 2664 chr6 170805979 + 162517148 162517249 MER5B 177 + 36 117 102624 15 31 32 25 21 0 9 chain 225123 chr6 170805979 + 162564608 162568300 L1MA1 4479 + 245 4042 8885 32 3 1 80 1 2 26 1 2 4 1 0 122 8 4 318 7 40 11 1 0 144 0 1 32 344 0 62 1 0 41 0 1 132 6 7 94 17 11 85 4 5 33 36 486 4 1 0 16 1 2 28 0 1 11 0 1 82 4 0 27 5 9 149 2 0 230 1 5 16 1 0 65 2 1 19 0 19 65 2 0 33 1 0 42 0 1 15 21 20 20 10 1 55 1 0 27 2 0 173 1 0 17 4 0 76 1 0 5 25 15 118 2 0 23 6 9 98 2 0 195 1 0 25 2 0 16 1 0 17 14 16 38 1 0 20 2 0 13 33 32 53 6 1 7 3 0 90 chain 39081 chr6 170805979 + 162631907 162632474 L1PA16 3655 + 3004 3557 35301 88 5 1 5 0 1 28 8 0 77 1 0 88 2 0 204 17 17 28 0 2 5 2 0 9 chain 28571 chr6 170805979 + 162650315 162650620 AluYa5 310 + 0 304 43996 97 1 0 207 chain 99634 chr6 170805979 + 162664926 162666133 L1PA8A 6298 + 4072 5279 18345 753 1 0 11 0 4 269 0 1 51 2 0 16 7 9 10 4 0 83 chain 37055 chr6 170805979 + 162681362 162681974 MER51A 677 + 0 662 36707 175 57 69 55 0 5 22 12 5 64 10 52 60 30 29 79 1 0 47 chain 3139 chr6 170805979 + 162717005 162717275 MLT1D 503 + 79 386 98476 28 137 167 20 4 49 12 54 16 15 chain 19036 chr6 170805979 + 162747015 162747325 MLT2A1 477 + 0 320 57513 21 3 8 43 0 8 57 16 17 16 4 1 10 0 1 21 0 1 53 12 9 54 chain 22628 chr6 170805979 + 162753543 162753923 THE1D 372 + 0 372 52943 33 0 1 65 14 6 52 68 67 148 chain 7534 chr6 170805979 + 162776897 162777070 L1PB1 5432 + 5261 5422 76042 19 2 1 13 17 14 18 3 1 5 1 0 14 2 0 23 2 1 22 1 0 12 1 0 18 chain 4169 chr6 170805979 + 162786364 162786413 MLT1J1 437 + 42 91 90326 49 chain 57307 chr6 170805979 + 162876906 162877595 L1PA7 6471 + 5768 6470 27157 15 0 12 86 0 3 5 3 0 78 6 7 496 chain 126279 chr6 170805979 + 162924730 162926381 L1PA10 4194 + 2499 4161 14511 162 1 0 116 5 8 319 3 4 4 1 0 171 0 1 50 5 7 17 10 13 219 0 4 18 0 1 26 0 1 28 3 0 38 3 5 365 2 0 28 0 4 8 3 0 34 1 0 11 chain 46217 chr6 170805979 + 162959859 162960659 L1PA16 3655 + 2846 3617 30953 53 1 0 23 2 1 67 0 1 39 0 1 100 1 0 73 1 0 82 19 17 24 3 4 70 27 28 75 2 0 5 6 8 25 0 2 5 33 28 12 38 14 14 chain 126887 chr6 170805979 + 162985020 162986695 L1PB1 5432 + 2778 4451 14427 38 1 0 9 7 8 100 0 1 15 6 5 290 2 1 137 0 1 348 6 1 230 5 7 144 0 1 337 chain 4259 chr6 170805979 + 163025981 163026036 L1P4 1494 + 781 835 89762 33 1 0 21 chain 120637 chr6 170805979 + 163039369 163040988 THE1D-int 1627 + 0 1622 15425 38 1 0 657 58 59 540 0 3 31 12 12 198 2 1 78 0 1 4 chain 31270 chr6 170805979 + 163083145 163083605 MER4A1 472 + 0 472 40921 15 0 2 4 0 1 11 1 0 7 0 7 50 0 1 41 1 0 41 26 25 162 0 3 31 1 3 64 1 0 4 chain 118856 chr6 170805979 + 163204751 163206419 L1PA15 4387 + 2684 4355 15734 9 0 19 228 0 1 8 4 5 107 0 1 105 1 0 28 7 8 99 0 1 103 0 4 403 20 14 106 1 0 115 0 1 17 2 0 38 1 0 27 1 0 54 1 0 22 18 13 47 6 3 11 0 2 31 3 1 14 5 0 26 chain 7669 chr6 170805979 + 163214183 163214294 MER3 215 + 101 211 75706 41 1 2 5 1 0 22 1 0 40 chain 23997 chr6 170805979 + 163223960 163225895 L1MA8 2339 + 752 1967 50796 51 2 0 27 1 2 45 1512 804 116 2 0 25 23 20 89 4 0 23 2 0 13 chain 27535 chr6 170805979 + 163250614 163251250 L1PB1 5432 + 4916 5424 45542 63 1 0 4 0 1 35 81 0 83 0 1 10 19 0 25 1 0 9 16 11 11 3 1 50 2 1 16 2 1 43 1 0 11 7 4 17 64 52 5 1 0 21 1 0 13 1 0 20 chain 2793 chr6 170805979 + 163265515 163265545 MIR 256 + 165 195 101681 30 chain 29167 chr6 170805979 + 163283518 163283827 AluYb8 318 + 0 308 43102 132 1 0 176 chain 20252 chr6 170805979 + 163443299 163443562 AluSg7 307 + 11 284 56077 120 0 1 4 5 6 115 0 8 19 chain 2805 chr6 170805979 + 163465770 163465841 L1M3 994 + 74 137 101622 25 8 1 12 10 9 16 chain 5914 chr6 170805979 + 163536357 163536437 Tigger2a 444 + 217 297 81428 54 0 2 5 2 0 19 chain 20547 chr6 170805979 + 163557329 163557770 L1MA3 4352 + 3877 4307 55720 109 6 8 29 2 0 32 105 88 47 4 18 27 4 0 23 2 0 21 11 9 19 chain 26759 chr6 170805979 + 163590192 163590688 LTR12F 595 + 0 595 46605 91 20 13 12 1 107 12 27 13 73 1 0 43 0 1 25 47 61 104 0 3 5 15 12 20 chain 47431 chr6 170805979 + 163604804 163605379 THE1C-int 1605 + 1030 1605 30495 516 5 4 45 0 1 9 chain 23258 chr6 170805979 + 163605379 163605701 THE1C 375 + 0 336 51989 76 14 0 49 3 0 20 3 0 5 0 34 152 chain 25572 chr6 170805979 + 163643454 163643747 AluY 311 + 6 298 48365 127 1 0 165 chain 63412 chr6 170805979 + 163676370 163677217 HERVL-int 5654 + 4795 5654 25543 178 4 5 155 0 1 32 3 0 45 9 7 195 6 19 127 6 8 87 chain 43532 chr6 170805979 + 163677217 163677775 MLT2A2 560 + 0 560 32429 181 1 0 13 1 0 148 7 0 60 0 11 147 chain 42336 chr6 170805979 + 163758051 163758604 MER41A 554 + 0 554 33166 322 0 1 157 6 5 42 7 8 19 chain 36128 chr6 170805979 + 163799609 163800153 L1PB1 5432 + 4584 5103 37324 37 0 2 6 4 0 15 1 0 80 7 11 69 0 2 15 37 7 39 0 1 49 0 1 185 chain 20634 chr6 170805979 + 163853222 163853463 L1PA6 6164 + 5922 6161 55579 232 2 0 7 chain 26067 chr6 170805979 + 163858882 163859235 THE1B 368 + 2 368 47632 42 5 20 102 10 6 17 3 5 174 chain 7369 chr6 170805979 + 163887113 163887323 Tigger4a 237 + 43 237 76481 13 17 0 13 25 25 21 28 28 36 11 12 46 chain 18415 chr6 170805979 + 163896527 163896888 THE1B 368 + 0 368 58215 45 0 3 57 133 138 97 1 0 28 chain 4577 chr6 170805979 + 163925080 163925157 MLT1A0 366 + 15 93 87929 36 11 12 30 chain 20342 chr6 170805979 + 163925211 163925515 AluSg 306 + 9 305 55959 95 0 1 13 3 0 23 1 4 5 3 0 51 22 16 88 chain 17468 chr6 170805979 + 163935782 163935971 L1PA3long 6157 + 5968 6157 59274 189 chain 44119 chr6 170805979 + 163940873 163941480 MER41B 635 + 12 613 32070 73 8 7 36 7 8 310 28 22 145 chain 4112 chr6 170805979 + 164034466 164034510 MSTA 426 + 362 406 90690 44 chain 24063 chr6 170805979 + 164039372 164039650 AluY 311 + 8 286 50705 115 1 0 12 0 1 150 chain 52340 chr6 170805979 + 164047443 164048094 THE1B-int 1605 + 940 1605 28778 489 1 8 26 0 7 135 chain 30265 chr6 170805979 + 164053283 164053803 MLT2A2 560 + 0 560 41795 180 2 0 26 38 39 63 10 42 49 4 15 28 4 2 58 39 39 19 chain 2742 chr6 170805979 + 164091243 164091274 MADE1 96 + 3 34 102017 31 chain 28456 chr6 170805979 + 164112966 164113332 THE1B 368 + 0 368 44186 14 0 2 24 0 5 128 1 0 29 3 0 91 1 0 75 chain 5540 chr6 170805979 + 164131546 164131699 MLT2A1 477 + 346 477 83083 38 78 56 37 chain 4195 chr6 170805979 + 164172833 164172880 HY4 93 + 0 47 90159 47 chain 122860 chr6 170805979 + 164204577 164206161 THE1B-int 1605 + 0 1605 15045 43 2 3 300 5 0 86 0 25 355 0 7 7 12 5 387 0 1 314 1 0 72 chain 3762 chr6 170805979 + 164251056 164251097 MLT2A2 560 + 518 559 93128 41 chain 7674 chr6 170805979 + 164278517 164278602 THE1C 375 - 89 174 75693 85 chain 28074 chr6 170805979 + 164369816 164370177 MER75 514 + 54 419 44761 219 1 5 141 chain 98694 chr6 170805979 + 164473553 164474655 L1PA4 6152 + 4251 5353 18449 1102 chain 13499 chr6 170805979 + 164500781 164501015 MER2 342 + 19 261 64315 34 36 35 28 6 15 130 chain 28005 chr6 170805979 + 164512224 164512579 THE1A 353 + 0 353 44856 110 1 0 88 1 0 155 chain 50904 chr6 170805979 + 164514242 164514806 L1PA4 6152 + 4257 4821 29238 564 chain 4099 chr6 170805979 + 164546218 164546386 L1MEf 1413 + 776 985 90780 26 102 143 40 chain 24208 chr6 170805979 + 164548638 164551164 LTR43 600 + 231 595 50485 207 10 8 60 0 10 14 2170 0 65 chain 4141 chr6 170805979 + 164611300 164611369 MER41-int 2638 + 1363 1431 90506 11 10 9 48 chain 3992 chr6 170805979 + 164619754 164619800 UCON12 82 - 7 53 91511 46 chain 10369 chr6 170805979 + 164662624 164662733 AluYk12 309 + 199 308 69671 109 chain 63833 chr6 170805979 + 164725035 164725768 L1HS 6032 + 1083 1820 25446 5 0 3 632 1 2 95 chain 5718 chr6 170805979 + 164763972 164764075 MLT1A-int 1186 + 1012 1116 82268 49 1 2 16 1 8 8 7 0 21 chain 69747 chr6 170805979 + 164786171 164798875 L1PA2 6032 + 4217 6030 24052 536 10891 0 1277 chain 30338 chr6 170805979 + 164822155 164822636 L1MA2 4263 + 3645 4114 41720 13 10 9 141 2 0 145 25 22 83 7 0 11 3 0 6 0 5 24 1 0 10 chain 42360 chr6 170805979 + 164831120 164831676 MLT2A2 560 + 0 559 33156 32 11 10 137 0 1 149 8 0 77 0 11 142 chain 23852 chr6 170805979 + 164868043 164868319 L1P1 4361 + 3854 4131 51018 227 0 1 49 chain 37923 chr6 170805979 + 164894230 164894684 L1PA7 6471 + 6004 6470 36120 272 0 2 118 2 12 62 chain 122594 chr6 170805979 + 164933118 164934603 LTR12C 1709 + 0 1709 15098 257 6 7 31 1 2 139 0 1 282 0 118 272 12 9 106 0 4 168 0 102 211 chain 154519 chr6 170805979 + 164948935 164950661 L1PA3long 6157 + 4430 6157 12085 540 0 1 1186 chain 267834 chr6 170805979 + 164957348 164960309 L1PA3long 6157 + 3192 6157 7767 754 0 1 417 1 3 950 0 1 839 chain 17091 chr6 170805979 + 164978906 164979087 L1PA4 6152 + 5970 6151 59706 181 chain 46800 chr6 170805979 + 165098978 165099815 MER52-int 3354 + 2428 3247 30728 103 9 1 121 21 19 46 2 23 33 7 6 52 9 7 41 2 0 15 1 0 36 2 0 11 1 0 42 2 0 33 1 0 14 33 29 7 2 0 6 1 0 33 0 2 11 2 0 40 3 2 14 19 13 28 2 1 6 1 0 7 1 0 17 chain 97523 chr6 170805979 + 165123770 165124852 L1PA3long 6157 + 5070 6152 18582 1082 chain 18405 chr6 170805979 + 165182224 165182467 LTR18A 364 + 55 325 58236 165 11 38 67 chain 169594 chr6 170805979 + 165194798 165196945 HERVL-int 5654 + 0 2157 11124 171 1 3 244 1 3 563 11 3 4 0 1 117 8 7 9 1 2 33 0 9 11 12 13 48 0 1 220 0 1 192 2 1 166 0 1 258 0 1 75 chain 11790 chr6 170805979 + 165237687 165237834 THE1B-int 1605 + 218 366 67235 143 0 1 4 chain 5049 chr6 170805979 + 165237860 165237917 THE1B 368 + 299 356 85422 57 chain 34462 chr6 170805979 + 165247573 165247955 L1PA6 6164 + 5064 5446 38386 382 chain 16900 chr6 170805979 + 165265022 165265201 L1PA4 6152 + 5972 6151 59915 179 chain 279920 chr6 170805979 + 165283575 165287511 L1PA10 4194 + 227 4161 7423 5 2 0 9 1 0 9 1 0 15 9 7 14 1 0 8 47 21 20 2 0 21 1 0 4 5 6 14 1 0 13 28 17 74 1 0 5 2 1 368 0 4 32 0 1 5 0 1 7 1 0 255 1 0 318 0 10 266 4 5 193 5 18 95 1 2 131 0 20 24 0 1 135 10 14 44 0 1 55 7 8 107 8 8 11 21 21 13 3 0 136 0 1 92 0 1 53 16 12 111 0 3 204 20 24 108 2 1 16 0 1 98 14 10 535 10 7 38 4 1 35 1 0 11 chain 299758 chr6 170805979 + 165303279 165306483 L1HS 6032 + 2824 6028 6840 3204 chain 3186 chr6 170805979 + 165308275 165308315 MLT1E2 623 + 155 195 98025 40 chain 25627 chr6 170805979 + 165350621 165350999 THE1C 375 + 0 375 48274 87 0 1 91 37 34 136 1 0 26 chain 503981 chr6 170805979 + 165368683 165374240 L1PA3long 6157 + 596 6157 3001 833 0 1 420 1 0 171 0 1 1251 0 2 286 0 1 1671 1 0 634 0 1 289 chain 8536 chr6 170805979 + 165409561 165409651 5S 121 + 0 90 73608 90 chain 311644 chr6 170805979 + 165459908 165463662 HERVK9-int 4720 + 36 4720 6579 13 8 5 4 1 0 66 1 0 8 1 0 28 1 0 1058 0 1 159 4 0 118 0 924 45 1 0 4 0 1 496 1 0 86 0 4 241 0 7 198 0 3 1094 4 1 11 0 6 103 chain 43379 chr6 170805979 + 165463678 165464178 MER9a2 513 + 13 513 32524 61 3 0 16 0 3 420 chain 145605 chr6 170805979 + 165490971 165492906 L1PBa 3878 + 1744 3744 12647 118 3 0 164 0 12 396 0 35 98 0 1 143 1 0 6 0 1 114 1 2 205 9 12 163 13 7 51 0 12 63 0 8 224 1 2 118 12 15 24 2 0 6 chain 454020 chr6 170805979 + 165524260 165529878 HERVL-int 5654 + 7 5654 4286 328 0 1 80 1 3 367 0 2 52 6 8 19 7 8 63 1 6 226 0 1 127 4 3 617 0 1 71 0 1 340 0 1 511 7 6 491 1 0 215 1 2 11 20 12 588 1 0 4 0 37 92 0 1 620 0 5 202 32 0 167 0 1 110 4 14 13 0 1 219 chain 31147 chr6 170805979 + 165529878 165530340 MLT2A1 477 + 0 469 41020 140 0 1 28 1 5 200 61 63 32 chain 12536 chr6 170805979 + 165554109 165554293 L1MA1 4479 + 3958 4139 65922 116 9 8 23 3 1 33 chain 38449 chr6 170805979 + 165558050 165558483 L1PA5 6144 + 5580 6013 35758 433 chain 5059 chr6 170805979 + 165560779 165560935 MSTA 426 + 29 198 85353 15 67 73 27 8 15 39 chain 116671 chr6 170805979 + 165592020 165593458 L1PA7 6471 + 5024 6468 16107 92 2 0 158 0 7 340 5 8 81 7 6 604 8 11 121 1 0 7 3 0 9 chain 24383 chr6 170805979 + 165600979 165601328 THE1A 353 + 4 351 50194 59 3 4 17 6 5 17 5 4 56 0 1 35 2 0 149 chain 41983 chr6 170805979 + 165609216 165609719 L1P1 4361 + 3840 4341 33365 170 0 1 137 1 0 157 1 0 23 2 1 12 chain 5598 chr6 170805979 + 165643574 165643906 L1MA7 2200 + 1880 2170 82812 36 132 118 16 12 1 31 74 58 18 1 0 12 chain 37737 chr6 170805979 + 165836791 165837211 L1PA2 6032 + 5612 6031 36248 164 1 0 255 chain 18283 chr6 170805979 + 165926995 165927225 L1PA7 6471 + 6228 6466 58381 167 0 10 53 2 0 8 chain 39044 chr6 170805979 + 166015041 166015560 MLT2A2 560 + 0 560 35323 71 8 9 60 6 23 22 6 29 346 chain 249857 chr6 170805979 + 166135425 166139198 L1PBa 3878 + 295 3777 8241 333 2 1 117 43 54 9 8 0 111 1 2 81 0 1 187 2 0 352 28 27 32 36 22 133 0 4 137 5 0 374 1 0 372 0 1 61 0 2 242 1 2 87 325 18 47 1 4 38 0 4 72 2 0 4 0 2 24 2 23 359 1 10 71 2 1 21 2 0 11 19 13 11 1 0 5 chain 27889 chr6 170805979 + 166139230 166139725 L1PB1 5432 + 4952 5420 45050 151 1 0 14 4 1 19 1 0 8 2 1 22 2 0 51 3 2 16 1 0 43 1 0 14 26 14 19 3 1 4 1 0 14 2 0 22 12 11 11 1 4 10 1 0 16 chain 38771 chr6 170805979 + 166145442 166145942 MLT2A2 560 + 0 526 35517 98 1 0 71 13 29 201 3 14 113 chain 75628 chr6 170805979 + 166174798 166175645 L1PA3long 6157 + 5311 6157 22683 671 3 1 33 0 1 140 chain 225842 chr6 170805979 + 166185262 166188285 L1PA6 6164 + 3451 6162 8864 229 14 11 474 0 1 1149 0 6 176 0 1 184 0 1 150 0 1 80 320 0 88 1 2 158 chain 128949 chr6 170805979 + 166224435 166225920 L1PA5 6144 + 4391 5877 14154 186 6 7 4 1 0 1195 0 1 93 chain 46288 chr6 170805979 + 166295016 166295592 LTR19B 566 + 0 566 30926 172 0 1 120 1 0 7 14 0 42 0 2 146 1 3 73 chain 139326 chr6 170805979 + 166314594 166316382 HERV17-int 4347 + 12 3881 13152 15 1 0 52 5 4 32 2 0 17 8 7 124 29 8 39 1 0 4 0 1 20 6 436 580 1 0 39 1 0 78 4 0 66 0 1 211 3 4 104 0 2 204 0 1672 10 0 3 17 0 4 115 chain 23468 chr6 170805979 + 166399784 166400069 AluY 311 + 13 306 51636 19 5 10 90 0 1 133 1 3 37 chain 378595 chr6 170805979 + 166425286 166429443 L1PA3long 6157 + 1978 6154 5511 348 1 0 835 0 1 353 0 1 978 0 2 180 3 0 766 14 33 540 1 0 113 0 1 25 chain 35663 chr6 170805979 + 166515716 166516191 MER4A1 472 + 0 472 37622 229 10 2 160 13 15 14 0 3 49 chain 30251 chr6 170805979 + 166517306 166518091 MER9a3 513 + 0 513 41804 18 0 2 76 9 54 28 342 0 78 20 2 16 0 18 26 0 21 61 0 1 33 1 2 77 chain 66002 chr6 170805979 + 166528216 166528947 L1PA5 6144 + 4780 5510 24960 514 1 0 216 chain 26357 chr6 170805979 + 166533948 166534250 AluYk4 311 + 8 310 47188 302 chain 123345 chr6 170805979 + 166576258 166577810 THE1A-int 1579 + 0 1569 14974 292 1 0 358 0 1 4 0 2 193 15 17 29 2 1 452 0 14 206 chain 23197 chr6 170805979 + 166577846 166578174 THE1A 353 + 25 353 52085 22 7 8 39 1 0 17 0 2 7 7 5 228 chain 43178 chr6 170805979 + 166596264 166596804 MLT2A2 560 + 19 560 32665 184 0 1 87 1 0 4 9 10 255 chain 85301 chr6 170805979 + 166679580 166680847 LTR12D 1347 + 0 1347 20570 50 20 15 178 0 1 52 0 37 63 0 1 139 71 25 6 2 0 132 14 7 25 0 2 83 22 23 106 7 8 55 0 97 22 1 0 4 5 6 210 chain 2295 chr6 170805979 + 166680126 166680153 LTR12D 1347 + 501 528 100108 27 chain 97500 chr6 170805979 + 166787599 166788851 L1PA8 5853 + 4620 5853 18590 391 7 1 104 13 6 442 1 0 44 2 0 74 1 0 58 2 1 19 2 1 92 chain 522524 chr6 170805979 + 166788874 166794840 L1PA4 6152 + 2 5976 2157 524 4 0 54 1 0 472 0 1 140 3 0 5 7 10 36 1 0 1076 6 5 748 0 1 91 4 0 100 1 16 1005 0 2 1688 chain 377718 chr6 170805979 + 166843492 166848892 L1PB1 5432 + 22 5422 5521 31 0 1 108 8 9 127 18 17 48 0 1 163 54 51 9 0 4 17 2 1 268 30 32 478 15 10 118 4 75 24 0 1 94 0 1 129 4 5 614 0 3 36 2 0 89 0 2 53 1 0 193 2 0 172 1 2 556 53 0 166 1 8 50 3 2 555 1 0 272 6 4 14 3 6 64 1 2 6 0 1 4 1 0 79 2 1 76 1 0 110 0 3 15 0 1 24 35 35 41 1 2 8 2 1 32 1 0 12 5 1 9 2 0 52 2 1 16 2 1 36 9 8 10 49 35 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 3220 chr6 170805979 + 166846963 166846997 L1PB1 5432 + 3504 3538 97724 34 chain 32174 chr6 170805979 + 166868613 166869248 MLT2A1 477 + 0 477 40213 15 0 4 49 17 5 96 4 1 163 0 7 45 9 0 12 170 25 55 chain 523751 chr6 170805979 + 166884811 166890990 L1PA5 6144 + 0 6138 2103 121 0 14 18 3 15 178 9 5 112 56 16 690 9 0 1138 3 0 7 0 1 843 4 0 100 0 15 673 0 1 1071 1 0 232 1 0 44 1 0 344 28 6 187 0 1 306 chain 42512 chr6 170805979 + 166891086 166891601 LTR17 781 + 259 781 33056 68 1 0 61 0 10 99 2 0 284 chain 372929 chr6 170805979 + 166893309 166897615 HERV17-int 4347 + 12 4347 5606 15 1 0 50 2 1 35 1 0 26 1 0 68 18 18 487 0 1 755 2 4 62 0 1 105 0 3 103 1 2 348 0 1 947 0 1 392 0 22 736 0 1 151 chain 26961 chr6 170805979 + 166897929 166898253 LTR17 781 + 0 326 46320 305 0 2 19 chain 2962 chr6 170805979 + 167066745 167066778 L1MB7 1623 + 1385 1418 100266 33 chain 4061 chr6 170805979 + 167107512 167107592 MADE1 96 + 0 96 91009 46 19 35 15 chain 23425 chr6 170805979 + 167126680 167127048 THE1C 375 + 0 375 51716 68 0 14 9 13 0 16 7 15 47 32 29 96 0 2 54 1 0 25 chain 4959 chr6 170805979 + 167135819 167135882 MER58A 224 + 145 207 85846 28 1 0 34 chain 3815 chr6 170805979 + 167190810 167190872 MER53 195 - 98 157 92742 16 2 0 28 1 0 15 chain 24410 chr6 170805979 + 167224424 167224724 AluSp 311 + 7 305 50153 117 0 1 169 3 0 11 chain 12091 chr6 170805979 + 167226737 167226885 LTR8 732 + 584 732 66682 148 chain 464471 chr6 170805979 + 167258606 167264773 L1PA8 5853 + 50 5853 4007 15 8 6 11 60 26 54 9 10 130 18 6 48 0 1 17 1 0 179 7 0 64 0 4 114 11 12 36 0 3 759 311 0 280 0 6 700 0 1 4 1 0 298 0 4 50 1 0 19 4 0 7 6 0 15 0 4 934 0 1 129 1 0 218 1 0 794 2 0 14 2 0 63 2 1 6 0 1 35 1 0 41 7 9 384 2 1 44 2 0 34 0 1 39 1 0 7 1 0 51 2 1 19 1 0 93 chain 33342 chr6 170805979 + 167314568 167315029 MER4A1 472 + 30 470 39224 239 28 7 194 chain 25772 chr6 170805979 + 167331676 167332023 MER57A1 433 + 83 433 48067 190 15 17 134 0 1 8 chain 136013 chr6 170805979 + 167334508 167335983 L1PA2 6032 + 4556 6031 13432 1475 chain 18773 chr6 170805979 + 167370860 167371093 L1PA5 6144 + 5903 6136 57821 85 0 7 10 7 0 131 chain 4686 chr6 170805979 + 167412955 167413024 MER39 703 + 554 625 87345 36 0 1 14 2 3 17 chain 5035 chr6 170805979 + 167449767 167449827 MER49 923 + 820 881 85489 12 0 1 48 chain 8650 chr6 170805979 + 167690209 167690309 MER4A1 472 + 14 115 73350 95 0 1 5 chain 26753 chr6 170805979 + 167719453 167719808 L1PA8 5853 + 5494 5847 46609 70 1 0 44 2 0 71 1 0 8 1 2 50 3 2 19 0 2 85 chain 29358 chr6 170805979 + 167792696 167793051 THE1A 353 + 0 353 42797 111 1 0 92 1 0 150 chain 24692 chr6 170805979 + 167797628 167798043 LTR3A 482 + 0 420 49747 21 2 0 35 0 6 47 0 1 5 0 1 63 9 8 16 45 55 9 10 0 12 1 0 68 0 1 53 0 1 4 1 0 14 chain 18655 chr6 170805979 + 167981878 167982213 THE1B 368 + 0 356 57939 40 1 16 8 0 1 41 8 6 62 1 0 21 58 66 95 chain 2919 chr6 170805979 + 168069360 168069395 MER58D 378 + 331 366 100684 35 chain 3981 chr6 170805979 + 168199638 168199682 MER4D1 891 + 286 330 91575 44 chain 52033 chr6 170805979 + 168248754 168249388 L1P3 4156 + 1106 1749 28866 141 0 6 22 9 10 345 0 2 117 chain 48249 chr6 170805979 + 168366104 168366696 LTR10C 591 + 0 591 30197 34 2 0 46 5 0 58 0 4 366 0 2 81 chain 2856 chr6 170805979 + 168419394 168419424 U2 167 + 0 30 101174 30 chain 83205 chr6 170805979 + 168630230 168631285 MER11C 1089 + 0 1073 20983 247 0 9 61 0 4 363 1 5 13 1 0 35 0 1 127 0 1 54 1 0 144 0 1 8 chain 27391 chr6 170805979 + 168633791 168634170 THE1C 375 + 0 375 45721 120 3 0 66 10 11 153 2 0 25 chain 14330 chr6 170805979 + 168680368 168680685 L1PB1 5432 + 5114 5401 63150 20 1 0 9 2 1 14 16 10 52 2 1 15 1 0 46 1 0 14 25 13 17 10 7 13 2 0 24 7 6 16 1 0 9 chain 53879 chr6 170805979 + 168682203 168682909 MER4E1 777 + 0 742 28262 23 0 4 223 0 1 78 0 19 59 0 1 24 0 1 109 0 8 98 9 10 5 0 1 78 chain 19199 chr6 170805979 + 168691329 168691599 L1PA8 5853 + 5589 5853 57350 19 2 0 74 1 0 8 1 0 63 8 7 42 1 0 51 chain 24546 chr6 170805979 + 168722767 168723111 THE1A 353 + 0 342 49952 79 12 11 15 6 5 92 1 0 55 0 1 84 chain 110968 chr6 170805979 + 168770535 168772138 HERVL-int 5654 + 1725 5654 16942 28 0 2 39 6 12 99 0 2 14 25 21 73 0 1 260 1 2 472 0 1 385 126 2443 75 chain 43288 chr6 170805979 + 168772138 168772680 MLT2A2 560 + 0 560 32587 36 0 8 453 0 10 53 chain 28636 chr6 170805979 + 168808962 168809287 L1PA7 6471 + 6130 6456 43891 247 0 1 78 chain 26394 chr6 170805979 + 168823069 168823350 AluYa5 310 + 30 310 47131 93 1 0 187 chain 3293 chr6 170805979 + 168860323 168860358 MER57B2 428 + 9 44 97084 35 chain 39999 chr6 170805979 + 168911954 168912487 MLT2A2 560 + 15 560 34662 41 0 1 123 1 0 121 7 0 91 0 1 6 3 14 76 0 1 39 0 6 25 chain 267442 chr6 170805979 + 168976145 168979078 L1PA3long 6157 + 3222 6156 7777 1263 1 0 1499 0 2 170 chain 28405 chr6 170805979 + 169014454 169014820 THE1C 375 + 8 375 44261 178 0 1 149 1 2 12 1 0 25 chain 88371 chr6 170805979 + 169032397 169033372 L1PA2 6032 + 5055 6025 19972 265 6 1 704 chain 31970 chr6 170805979 + 169069818 169070257 MLT2A1 477 + 0 477 40363 168 1 5 29 1 2 180 7 0 6 10 50 37 chain 47202 chr6 170805979 + 169084226 169084808 LTR14C 587 + 0 587 30572 12 0 2 109 12 13 335 1 3 113 chain 42384 chr6 170805979 + 169086158 169086709 MER41A 554 + 0 554 33141 40 15 16 168 0 1 85 0 1 243 chain 35996 chr6 170805979 + 169098601 169099145 MLT2A2 560 + 0 560 37417 168 32 34 64 37 39 97 0 11 139 0 1 7 chain 17295 chr6 170805979 + 169101972 169102174 HERVL-int 5654 + 3849 4051 59469 202 chain 9663 chr6 170805979 + 169112268 169112402 MER4E1 777 + 623 770 71136 25 9 20 85 0 2 15 chain 42098 chr6 170805979 + 169147865 169148442 L1PA6 6164 + 5220 5777 33292 83 5 8 4 0 1 149 14 16 19 37 8 209 0 3 57 chain 119351 chr6 170805979 + 169180756 169182141 L1PA6 6164 + 4776 6161 15636 539 1 0 516 0 1 329 chain 48568 chr6 170805979 + 169269965 169270626 MER4E1 777 + 0 759 30094 18 1 3 22 0 4 23 10 53 206 0 19 88 1 2 26 1 5 71 2 10 79 0 15 95 0 2 18 chain 8218 chr6 170805979 + 169277614 169277727 MER57-int 2662 + 2190 2304 74358 41 1 0 5 4 6 62 chain 42064 chr6 170805979 + 169343469 169344074 PRIMA4_LTR 623 + 0 623 33316 107 0 13 68 4 0 68 0 1 57 0 2 68 6 0 39 1 5 12 7 6 18 9 17 82 0 1 59 chain 440880 chr6 170805979 + 169357552 169362466 L1PA4 6152 + 1226 6141 4559 45 0 1 1422 5 0 8 1 6 162 0 1 294 1 0 18 1 0 2880 0 1 77 chain 13726 chr6 170805979 + 169373337 169373607 L1PB1 5432 + 5178 5425 63981 42 2 1 15 1 0 45 1 0 14 25 14 17 9 6 15 2 0 25 1 0 20 1 0 12 1 0 13 1 0 8 chain 114271 chr6 170805979 + 169432759 169435884 THE1B-int 1605 + 18 1600 16508 138 61 8 96 1521 0 81 8 7 84 0 25 41 29 26 6 0 1 429 1 0 4 0 1 45 0 15 44 0 2 34 14 5 242 5 6 242 chain 41799 chr6 170805979 + 169476055 169476635 LTR14B 630 + 0 630 33490 213 1 18 4 0 1 50 31 38 27 0 21 52 0 1 115 0 3 87 chain 3871 chr6 170805979 + 169481249 169481291 LTR12C 1709 + 676 718 92350 42 chain 7556 chr6 170805979 + 169481858 169481948 LTR12D 1347 + 1257 1347 75975 90 chain 86081 chr6 170805979 + 169483727 169485069 L1PREC2 3366 + 1771 3075 20420 122 2 3 72 2 3 442 8 11 123 2 3 161 1 0 41 2 0 54 2 1 29 59 50 19 5 0 16 7 5 26 4 0 11 22 8 35 3 1 44 3 1 7 1 0 4 1 0 12 chain 163416 chr6 170805979 + 169509006 169510792 L1PA4 6152 + 4366 6152 11517 1786 chain 7073 chr6 170805979 + 169516897 169517005 MSTA-int 1630 + 1523 1618 77360 88 13 0 7 chain 95280 chr6 170805979 + 169600207 169601284 L1P1 4361 + 873 1952 18872 856 0 2 221 chain 9956 chr6 170805979 + 169608156 169608342 L1PB3 3668 + 3294 3457 70516 15 33 10 64 8 8 66 chain 33066 chr6 170805979 + 169621921 169622353 MER4A1 472 + 0 432 39460 53 1 0 345 10 11 23 chain 57965 chr6 170805979 + 169678590 169679348 MER4E 760 + 0 760 26974 24 2 0 127 26 29 152 10 9 28 0 2 389 chain 4663 chr6 170805979 + 169679348 169679405 MSTB-int 1649 + 1567 1624 87467 57 chain 19847 chr6 170805979 + 169686683 169686945 L1MA4 2864 + 2388 2651 56616 28 0 1 61 0 1 18 3 2 152 chain 72852 chr6 170805979 + 169697001 169697978 LTR13 1007 + 0 1007 23342 381 4 5 55 1 0 5 1 2 92 0 2 86 2 1 42 12 14 22 0 4 67 15 26 11 0 1 92 0 5 39 13 17 21 1 2 15 chain 29524 chr6 170805979 + 169819205 169819614 MER4A1 472 + 40 472 42580 186 5 26 78 0 1 4 1 0 56 12 14 67 chain 77451 chr6 170805979 + 169820580 169821618 MER4-int 2692 + 1649 2692 22205 130 5 16 95 0 2 58 1 0 123 12 13 44 0 2 15 21 9 47 7 6 46 0 1 17 2 0 9 2 6 231 1 0 134 0 1 38 chain 19907 chr6 170805979 + 169860636 169860992 THE1D 372 + 0 371 56521 56 0 1 54 0 1 48 75 87 36 8 10 47 1 0 31 chain 5408 chr6 170805979 + 169953361 169953427 MLT2B5 662 + 297 388 83670 30 0 25 36 chain 8279 chr6 170805979 + 170000053 170000155 MER4D1 891 + 781 883 74219 102 chain 2663 chr6 170805979 + 170006538 170006573 MER20 218 + 35 69 102643 4 1 0 30 chain 17136 chr6 170805979 + 170203999 170204285 THE1C 375 + 84 375 59658 23 7 8 10 3 0 60 1 0 44 15 20 34 9 11 22 0 1 58 chain 281781 chr6 170805979 + 170350804 170354642 L1PA11 4918 + 34 4391 7380 7 0 5 32 10 7 27 0 1 4 2 0 5 6 6 40 14 13 32 2 0 5 2 1 58 0 2 71 15 5 46 6 10 318 0 1 145 0 6 40 0 1 486 2 1 11 4 8 115 0 6 45 1 0 9 6 10 200 4 1 122 0 30 84 0 14 63 3 1 76 7 4 32 2 4 6 0 9 26 0 5 203 21 0 50 1 0 4 6 2 283 18 476 30 6 20 28 11 19 518 0 1 37 1 0 87 0 1 135 0 5 38 0 4 95 10 0 65 chain 2437 chr6 170805979 + 170384767 170384818 MER58C 217 + 63 111 104011 20 4 3 14 2 0 11 chain 23775 chr6 170805979 + 170628665 170629202 L2c 621 + 100 615 51153 24 26 14 35 15 16 68 70 77 9 9 0 60 1 0 113 18 12 53 11 13 12 4 0 9 chain 22970 chr6 170805979 + 170670666 170670932 L1PA5 6144 + 5872 6142 52403 216 0 4 50 chain 19041 chr6 170805979 + 170693744 170694039 LTR39 781 + 177 474 57510 90 23 16 138 14 23 30 chain 3399 chr7 159345973 + 27688 27731 LTR54B 464 + 200 246 96080 19 0 3 24 chain 235076 chr7 159345973 + 47276 49832 L1PA3long 6157 + 3587 6143 8597 2556 chain 4915 chr7 159345973 + 50691 50752 MER66B 489 + 386 447 86090 61 chain 8553 chr7 159345973 + 58650 58760 MER30 238 + 131 238 73556 10 3 0 97 chain 26799 chr7 159345973 + 130581 130894 L1PA5 6144 + 5832 6143 46544 164 0 2 128 1 0 9 3 0 8 chain 10731 chr7 159345973 + 187987 188409 MER34C_ 573 + 35 509 68987 104 1 0 9 259 307 23 0 4 16 0 1 10 chain 53721 chr7 159345973 + 275108 277019 MER4E1 777 + 1 760 28309 15 2 1 185 0 12 38 1 0 289 6 5 4 0 1 24 0 1 69 1172 9 106 chain 26794 chr7 159345973 + 724235 724610 THE1B 368 + 0 368 46547 172 1 0 24 8 0 18 0 1 87 16 17 49 chain 11548 chr7 159345973 + 731570 731757 MER30 238 + 0 196 67667 90 20 8 13 1 23 33 1 0 29 chain 26215 chr7 159345973 + 744483 744766 L1PA3long 6157 + 5326 5609 47395 283 chain 163920 chr7 159345973 + 1037297 1040193 SVA_F 1814 + 25 1814 11487 191 1 0 91 1 0 581 1 0 11 275 0 49 0 15 218 843 0 623 1 0 10 chain 12225 chr7 159345973 + 1038238 1038400 SVA_F 1814 + 914 1091 41007 33 4 19 125 chain 2181 chr7 159345973 + 1038400 1038425 SVA_F 1814 + 1267 1291 62164 7 1 0 17 chain 27637 chr7 159345973 + 1038716 1039341 SVA_F 1814 + 1005 1274 40575 128 354 0 44 1 0 4 1 0 93 chain 24136 chr7 159345973 + 1038900 1039163 SVA_F 1814 + 1013 1274 50595 164 1 0 10 1 0 87 chain 16710 chr7 159345973 + 1039341 1039522 SVA_F 1814 + 1098 1274 48790 72 4 0 11 1 0 93 chain 2753 chr7 159345973 + 1039522 1039553 SVA_F 1814 + 1098 1129 56884 31 chain 101384 chr7 159345973 + 1069388 1070462 SVA_F 1814 + 11 1278 18142 648 0 1 276 0 192 150 chain 14619 chr7 159345973 + 1124561 1124726 L1PA2 6032 + 5869 6032 62776 5 2 0 158 chain 34939 chr7 159345973 + 1171404 1172073 LTR12F 595 + 6 595 38064 78 48 0 16 0 13 20 0 16 28 0 8 25 44 5 149 0 1 21 95 65 61 1 0 83 chain 56978 chr7 159345973 + 1279752 1280420 L1PA7 6471 + 5789 6459 27272 64 0 1 453 1 2 150 chain 4332 chr7 159345973 + 1281368 1281479 MER33 330 + 164 275 89279 18 33 32 40 3 4 17 chain 4445 chr7 159345973 + 1328446 1328501 LTR2C 499 + 444 499 88628 55 chain 15497 chr7 159345973 + 1571297 1571943 MER51B 395 + 0 395 61659 34 0 34 30 50 0 20 0 56 37 55 57 46 309 16 65 chain 9538 chr7 159345973 + 1881253 1881380 MER85 139 + 0 139 71397 96 2 14 29 chain 129623 chr7 159345973 + 2161110 2162602 SVA_B 1603 + 0 1601 14080 19 0 25 197 0 1 536 0 80 46 0 1 72 1 0 9 4 16 15 15 6 578 chain 42419 chr7 159345973 + 2183453 2183913 L1PA4 6152 + 5692 6152 33117 460 chain 163557 chr7 159345973 + 2267349 2269533 SVA_F 1814 + 9 1814 11506 668 229 0 251 49 0 20 126 14 39 1 0 10 1 0 166 2 0 10 1 0 322 0 16 289 chain 10849 chr7 159345973 + 2268039 2268246 SVA_F 1814 + 855 1213 60981 25 0 1 15 7 197 83 1 0 25 39 0 12 chain 1001 chr7 159345973 + 2268195 2268229 SVA_F 1814 + 625 659 75425 34 chain 3612 chr7 159345973 + 2268500 2268546 SVA_F 1814 + 932 1119 61800 15 19 160 12 chain 10858 chr7 159345973 + 2268570 2268692 SVA_F 1814 + 967 1089 54209 122 chain 11331 chr7 159345973 + 2297593 2297784 L1PB3 3668 + 3395 3566 68032 88 16 0 13 1 0 7 1 0 25 8 6 32 chain 162139 chr7 159345973 + 2302089 2303956 SVA_D 2077 + 22 2067 11602 6 1 0 227 0 1 582 40 0 79 0 37 49 1 179 206 0 1 4 9 8 453 0 1 189 0 2 21 chain 6405 chr7 159345973 + 2352409 2352549 MER44A 345 + 110 257 79656 8 20 0 50 0 8 29 16 32 6 0 3 11 chain 545628 chr7 159345973 + 2743560 2749671 L1PA4 6152 + 10 6151 989 127 1 15 178 0 3 243 1 0 131 1 2 2017 3 0 105 0 5 700 1 0 263 1 0 141 0 1 285 3 0 59 0 11 60 0 4 1791 chain 3207 chr7 159345973 + 2809601 2809639 MER66B 489 + 295 333 97843 38 chain 9583 chr7 159345973 + 2827112 2827225 L1MB5 1630 + 1357 1469 71295 35 1 0 77 chain 19912 chr7 159345973 + 2849264 2849624 THE1B 368 + 0 357 56505 82 8 9 16 25 16 55 33 26 6 0 4 10 11 19 114 chain 12310 chr7 159345973 + 2951322 2951476 LTR8 732 + 0 156 66274 27 0 2 127 chain 6819 chr7 159345973 + 2981773 2982008 MLT2B2 565 + 4 255 78247 63 0 3 11 138 151 23 chain 41433 chr7 159345973 + 3016169 3017005 MER41A 554 + 2 554 33713 89 1 2 33 3 17 155 0 8 124 307 0 124 chain 15880 chr7 159345973 + 3017454 3018545 MER41C 542 + 15 503 61182 28 6 7 131 850 246 76 chain 15017 chr7 159345973 + 3029345 3029543 L1PA8 5853 + 5650 5845 62248 34 1 0 56 2 1 19 1 0 85 chain 12633 chr7 159345973 + 3029953 3030119 L1PA8 5853 + 5682 5845 65747 11 1 0 47 2 1 19 2 1 84 chain 10257 chr7 159345973 + 3073624 3073751 MER85 139 + 0 137 69884 89 0 10 38 chain 556364 chr7 159345973 + 3121546 3127690 L1PA3long 6157 + 0 6157 343 951 0 4 62 0 8 297 0 1 1268 1 0 2716 0 1 849 chain 32272 chr7 159345973 + 3160167 3160598 MLT2A1 477 + 0 477 40132 169 4 1 8 0 1 24 0 1 55 5 18 108 4 0 14 3 41 37 chain 25509 chr7 159345973 + 3162794 3163119 THE1B 368 + 0 341 48470 42 1 16 118 1 0 93 0 2 70 chain 6892 chr7 159345973 + 3213367 3213448 MER50 708 + 562 643 77979 81 chain 28456 chr7 159345973 + 3214692 3215098 MER57A1 433 + 0 410 44187 246 0 1 25 48 50 41 0 1 46 chain 44405 chr7 159345973 + 3259852 3260384 MER41A 554 + 21 554 31881 406 0 1 126 chain 38078 chr7 159345973 + 3262675 3263160 MER41A 554 + 0 490 36010 93 0 1 157 2 0 176 0 1 41 0 5 16 chain 18897 chr7 159345973 + 3277969 3278248 L1PA16 3655 + 2940 3201 57643 140 1 0 62 25 8 51 chain 5076 chr7 159345973 + 3313679 3313766 L1MA8 2339 + 2121 2203 85262 32 6 7 36 6 0 7 chain 6947 chr7 159345973 + 3556815 3556950 L1MA3 4352 + 4195 4317 77789 41 15 12 12 9 1 21 1 0 6 1 0 29 chain 49563 chr7 159345973 + 3638248 3638794 L1PA4 6152 + 5605 6151 29745 546 chain 4118 chr7 159345973 + 3729417 3729509 MER20 218 + 47 140 90661 36 30 31 26 chain 29121 chr7 159345973 + 3779652 3779961 AluYb8 318 + 2 311 43160 309 chain 89856 chr7 159345973 + 3815701 3816680 L1PA2 6032 + 2471 3450 19706 979 chain 55052 chr7 159345973 + 3850391 3851017 L1PA5 6144 + 5518 6143 27851 367 1 0 258 chain 20661 chr7 159345973 + 3945613 3945928 AluY 311 + 0 311 55552 63 4 0 69 30 31 43 2 1 4 0 1 69 2 1 29 chain 23081 chr7 159345973 + 4039044 4039304 L1PA4 6152 + 5883 6143 52236 260 chain 24288 chr7 159345973 + 4060409 4062142 L1PA3long 6157 + 4431 6157 50350 949 7 0 777 chain 10299 chr7 159345973 + 4213018 4213131 AluSc 308 + 20 133 69804 113 chain 21409 chr7 159345973 + 4290793 4291138 THE1B 368 + 2 351 54626 166 2 1 11 18 25 4 1 0 4 0 1 14 23 21 102 chain 4641 chr7 159345973 + 4329592 4329647 MLT1A0 366 + 250 305 87592 55 chain 41638 chr7 159345973 + 4333801 4334341 MER41A 554 + 5 554 33603 387 5 8 134 0 6 14 chain 22189 chr7 159345973 + 4359649 4359896 L1PA5 6144 + 5897 6144 53583 247 chain 4384 chr7 159345973 + 4375927 4376010 MER41B 635 + 165 272 88978 47 10 23 10 1 12 15 chain 8828 chr7 159345973 + 4384927 4385439 L1PB1 5432 + 5236 5420 72921 41 313 5 14 3 0 6 16 6 19 26 22 21 1 0 21 1 0 13 1 0 16 chain 23005 chr7 159345973 + 4395259 4395602 THE1D 372 + 0 357 52349 72 1 11 82 42 46 146 chain 9658 chr7 159345973 + 4404786 4404925 MSTA 426 + 8 143 71142 90 10 7 26 1 0 12 chain 7512 chr7 159345973 + 4449268 4449361 MER74B 573 + 179 272 76102 93 chain 36597 chr7 159345973 + 4481443 4481915 L1PA8 5853 + 5384 5853 37018 81 0 4 95 1 0 44 2 0 74 1 0 5 2 1 52 2 1 19 5 4 89 chain 40750 chr7 159345973 + 4488788 4489302 L1PA7 6471 + 5936 6465 34120 36 16 38 127 1 0 321 6 0 7 chain 21559 chr7 159345973 + 4533564 4533893 THE1B 368 + 0 356 54428 42 2 17 110 1 0 15 46 59 113 chain 42170 chr7 159345973 + 4539647 4540170 PABL_A 660 + 75 599 33268 193 0 1 330 chain 19056 chr7 159345973 + 4541738 4542096 THE1B 368 + 3 368 57489 102 18 19 53 59 66 63 14 13 49 chain 31411 chr7 159345973 + 4570621 4571498 MLT2A1 477 + 0 477 40802 169 4 1 25 3 1 78 6 5 31 0 1 68 0 1 5 427 43 8 12 0 41 chain 17818 chr7 159345973 + 4608782 4608981 L1PA4 6152 + 5947 6146 58862 199 chain 22384 chr7 159345973 + 4622485 4622805 THE1D 372 + 2 319 53298 59 6 2 100 23 25 5 1 0 126 chain 139882 chr7 159345973 + 4623339 4624908 SVA_D 2077 + 25 2070 13105 813 0 123 31 16 66 45 1 304 663 chain 5290 chr7 159345973 + 4689478 4689565 U13 108 + 0 86 84242 38 12 11 37 chain 3361 chr7 159345973 + 4697402 4697440 MER58A 224 + 41 79 96482 38 chain 104771 chr7 159345973 + 4793347 4794735 LTR12C 1709 + 0 1709 17717 193 0 1 91 15 16 37 0 43 83 0 3 6 22 17 33 6 7 36 15 12 52 1 0 20 0 278 184 2 1 5 2 0 106 0 4 31 0 2 60 6 7 293 5 4 84 chain 29176 chr7 159345973 + 4890418 4891186 MER4A 717 + 0 453 43089 20 1 2 83 0 2 16 9 0 91 11 12 105 11 9 17 316 9 62 3 2 23 chain 5634 chr7 159345973 + 4896039 4896145 MER74A 558 + 448 552 82641 31 27 25 48 chain 19385 chr7 159345973 + 5149350 5149694 MSTA 426 + 44 426 57147 26 1 2 29 29 54 7 4 0 42 5 3 29 8 6 54 4 24 106 chain 5441 chr7 159345973 + 5163982 5164047 L1MC1 2226 + 1276 1341 83499 65 chain 24664 chr7 159345973 + 5338652 5338947 AluSp 311 + 14 307 49778 272 2 0 21 chain 3862 chr7 159345973 + 5343367 5343414 Tigger1 2417 + 2259 2306 92403 47 chain 28887 chr7 159345973 + 5385204 5385524 AluYb9 318 + 0 318 43502 63 2 0 255 chain 3631 chr7 159345973 + 5445525 5445566 MLT1C 463 + 57 98 94172 41 chain 34623 chr7 159345973 + 5583490 5583945 LTR2 463 + 0 463 38268 212 17 17 53 0 4 73 15 16 59 0 3 26 chain 122780 chr7 159345973 + 5736108 5737522 SVA_C 1631 + 46 1615 15064 11 25 3 155 2 0 611 0 179 610 chain 3970 chr7 159345973 + 5748685 5748806 Tigger2 2703 + 2577 2648 91641 8 0 12 23 62 0 28 chain 3188 chr7 159345973 + 5793258 5793294 LTR17 781 + 290 326 97998 36 chain 16600 chr7 159345973 + 5793974 5794189 LTR12C 1709 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16 5 2 0 33 1 0 9 1 0 27 chain 24468 chr7 159345973 + 6340645 6340917 AluY 311 + 28 301 50081 104 0 1 168 chain 22963 chr7 159345973 + 6415557 6415860 AluSc8 310 + 1 300 52422 47 5 6 16 7 0 38 0 1 14 2 0 9 0 3 165 chain 28524 chr7 159345973 + 6438021 6438355 L1PA5 6144 + 5802 6138 44079 187 0 1 53 0 1 94 chain 21292 chr7 159345973 + 6440120 6440401 AluSp 311 + 11 298 54775 18 1 0 26 0 1 10 0 7 186 8 7 32 chain 27458 chr7 159345973 + 6458320 6458619 AluYa5 310 + 12 310 45628 120 1 0 178 chain 17600 chr7 159345973 + 6486166 6486377 AluSc 308 + 80 291 59120 211 chain 3260 chr7 159345973 + 6489866 6489902 MLT1F1 559 + 355 391 97379 36 chain 76113 chr7 159345973 + 6516202 6517438 LTR13_ 950 + 0 950 22536 118 0 4 270 4 5 28 5 28 415 314 0 82 chain 23556 chr7 159345973 + 6634778 6635073 AluSg 306 + 11 304 51493 255 2 0 38 chain 25734 chr7 159345973 + 6836238 6836546 AluSp 311 + 0 311 48115 91 0 3 217 chain 21559 chr7 159345973 + 6862098 6862330 L1PA2 6032 + 5590 5822 54427 232 chain 77726 chr7 159345973 + 6901996 6902963 LTR5_Hs 974 + 0 974 22159 50 9 12 337 3 2 57 0 4 311 0 1 200 chain 28648 chr7 159345973 + 6903790 6904200 LTR7 482 + 0 482 43872 69 8 46 109 3 4 18 17 49 95 0 1 91 chain 283123 chr7 159345973 + 6904202 6907816 HERVH-int 3825 + 0 3824 7335 181 10 12 19 4 15 149 0 4 155 14 9 26 1 0 10 1 0 12 32 22 4 1 0 13 3 0 25 1 0 30 2 0 11 1 0 17 21 0 9 0 1 5 2 1 49 1 0 137 0 1 181 0 2 126 15 0 459 4 31 239 0 1 62 0 10 352 1 2 681 16 18 39 0 210 230 1 0 38 0 2 224 chain 30387 chr7 159345973 + 6908583 6908992 LTR7 482 + 1 482 41686 68 8 46 109 3 4 30 0 32 75 1 2 115 chain 30534 chr7 159345973 + 6986396 6986820 MER4A1 472 + 33 467 41537 67 0 2 118 33 35 140 0 2 52 0 4 14 chain 19646 chr7 159345973 + 7016845 7017139 L1PA15 4387 + 3981 4267 56864 123 1 0 27 7 6 48 1 0 22 4 0 10 1 0 50 chain 189235 chr7 159345973 + 7041833 7044246 L1P3 4156 + 0 2403 10155 140 3 1 60 4 3 35 24 23 58 11 10 78 2 0 117 0 1 291 0 1 336 1 3 340 14 7 899 chain 16493 chr7 159345973 + 7051884 7052179 MER21B 843 + 0 314 60389 27 10 11 44 0 6 6 54 67 53 1 0 100 chain 5113 chr7 159345973 + 7055602 7055676 MER3 215 + 145 215 85087 18 4 0 52 chain 26079 chr7 159345973 + 7104904 7105332 MER4A1 472 + 0 434 47608 177 19 23 6 4 0 115 0 1 26 52 57 29 chain 177882 chr7 159345973 + 7107683 7110238 MER4-int 2692 + 79 2692 10685 20 5 1 15 8 0 12 0 5 212 1 0 42 10 6 147 9 0 15 3 13 29 1 0 100 0 2 27 11 10 173 1 0 77 3 4 14 0 1 51 0 1 49 1 0 234 3 1 51 1 17 57 2 3 284 0 1 4 5 6 36 72 73 16 2 1 112 0 1 22 20 23 155 0 1 27 7 6 35 0 1 10 26 5 134 0 1 62 0 3 19 19 82 104 chain 12388 chr7 159345973 + 7110246 7110397 MER4A1 472 + 0 154 66161 49 1 0 76 0 4 25 chain 11492 chr7 159345973 + 7110469 7110629 MER4A1 472 + 288 451 67760 107 8 10 26 0 1 19 chain 20846 chr7 159345973 + 7117498 7117721 AluYb9 318 + 82 305 55312 223 chain 69272 chr7 159345973 + 7125159 7125930 L1PA4 6152 + 5378 6143 24166 634 6 0 131 chain 58678 chr7 159345973 + 7153939 7154656 THE1A-int 1579 + 857 1574 26765 186 0 3 5 3 0 25 6 5 439 0 1 53 chain 92430 chr7 159345973 + 7163294 7164301 L1PA3long 6157 + 3973 4980 19282 1007 chain 5502 chr7 159345973 + 7242050 7242126 MER33 330 + 33 111 83224 53 1 3 22 chain 13775 chr7 159345973 + 7263192 7263388 MER30 238 + 6 235 63916 80 1 0 4 14 48 97 chain 46204 chr7 159345973 + 7313477 7313981 L1PA4 6152 + 5326 5830 30959 504 chain 6521 chr7 159345973 + 7322244 7322322 MER34B 572 + 439 517 79264 78 chain 16848 chr7 159345973 + 7351797 7352068 MER4B 649 + 0 311 59978 24 1 0 7 3 1 15 1 2 69 27 27 12 0 42 112 chain 38593 chr7 159345973 + 7361676 7362188 L1PA7 6471 + 5970 6468 35642 15 17 0 65 0 1 85 1 3 329 chain 100359 chr7 159345973 + 7461959 7465084 L1PB1 5432 + 19 2738 5149 33 6 19 372 0 1 163 0 1 19 1 2 19 318 0 94 0 14 217 1 0 89 137 0 333 0 1 7 0 10 22 4 9 102 0 3 897 0 3 42 3 15 18 0 1 22 0 5 79 0 1 15 21 0 91 chain 565410 chr7 159345973 + 7465092 7471120 L1HS 6032 + 0 6028 86 185 0 1 1073 1 0 4769 chain 105209 chr7 159345973 + 7471150 7474426 L1PB1 5432 + 2738 5417 5149 153 4 10 251 1 0 47 0 1 4 309 7 310 4 6 205 1 0 225 1 0 89 0 1 65 0 1 121 12 7 68 0 1 183 12 0 135 3 0 46 1 3 28 0 2 396 1 2 9 257 0 20 1 0 12 1 0 10 17 11 52 1 0 18 1 0 37 9 8 14 1 0 4 3 0 8 9 0 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 10 4 3 13 chain 7907 chr7 159345973 + 7477369 7477477 MER2 342 + 144 255 75096 72 2 5 34 chain 314021 chr7 159345973 + 7544201 7547598 L1PA2 6032 + 2635 6032 6530 3397 chain 182642 chr7 159345973 + 7558150 7560740 L1PA13 3608 + 866 3486 10462 48 1 3 136 2 1 272 0 2 468 1 0 135 2 1 8 0 2 6 1 0 4 8 12 21 0 1 38 13 13 88 1 3 72 53 44 43 4 1 6 0 16 8 1 0 9 0 2 6 10 8 338 1 0 137 0 1 99 0 3 202 9 5 14 5 0 3 0 37 58 3 2 32 2 0 60 1 0 28 1 0 29 1 0 5 2 0 47 2 0 5 2 0 20 1 0 18 chain 352958 chr7 159345973 + 7600276 7604218 L1PA4 6152 + 2192 6151 5881 194 0 4 813 4 0 841 1 0 592 0 5 405 0 5 247 0 4 638 2 0 191 0 6 14 chain 12833 chr7 159345973 + 7646289 7646464 THE1B 368 + 0 177 65389 18 0 1 88 9 10 60 chain 4516 chr7 159345973 + 7685652 7685762 MER50 708 + 514 593 88230 10 21 0 13 1 0 23 11 2 31 chain 3857 chr7 159345973 + 7705674 7705796 L1MC1 2226 + 2083 2191 92421 20 1 0 5 30 20 7 1 0 19 5 4 26 1 0 7 chain 420884 chr7 159345973 + 7722256 7727495 HERVL-int 5654 + 0 5654 4867 210 11 9 5 0 2 565 0 1 340 2 0 592 0 2 179 64 53 31 0 8 188 1 2 28 0 7 373 0 22 199 0 1 244 0 1 429 0 3 8 0 4 443 0 4 60 0 385 417 0 1 40 22 3 24 0 3 205 0 1 135 1 0 120 1 0 52 4 5 17 0 4 101 3 2 4 0 1 121 chain 6596 chr7 159345973 + 7823284 7823364 MER53 195 + 5 85 78979 80 chain 23513 chr7 159345973 + 7846818 7847069 L1HS 6032 + 5781 6032 51565 251 chain 48982 chr7 159345973 + 7875147 7875723 L1P3 4156 + 3261 3838 29959 110 1 2 127 1 0 30 0 1 307 chain 15559 chr7 159345973 + 7904829 7905103 Tigger3a 397 + 0 333 61576 22 31 32 19 17 66 9 0 10 94 1 0 81 chain 18872 chr7 159345973 + 7907546 7907902 THE1B 368 + 0 368 57679 23 1 0 24 32 39 20 15 17 46 1 0 29 35 0 16 0 40 114 chain 37431 chr7 159345973 + 7995498 7995911 L1PA5 6144 + 5731 6144 36458 413 chain 60475 chr7 159345973 + 8001382 8002093 L1PA6 6164 + 5432 6152 26242 161 0 2 309 0 7 241 chain 462695 chr7 159345973 + 8096329 8102268 L1PA7 6471 + 403 6467 4058 10 1 0 60 1 0 26 13 11 67 3 0 71 14 13 60 21 26 66 0 65 137 1 25 212 13 32 850 0 2 384 0 2 119 2 1 13 3 14 134 0 4 192 1 0 120 5 4 374 6 0 21 5 6 10 5 4 61 15 0 62 0 9 70 0 1 364 11 7 236 0 3 66 0 2 54 7 1 166 0 1 14 13 17 273 5 4 295 1 0 30 0 8 339 6 5 343 0 1 212 5 14 271 chain 13731 chr7 159345973 + 8110254 8110807 MER41B 635 + 386 624 63975 65 22 21 24 4 0 12 314 6 65 9 7 38 chain 2452 chr7 159345973 + 8154972 8155020 MADE1 96 + 48 96 103895 48 chain 40275 chr7 159345973 + 8198776 8199423 L1MA2 4263 + 3436 4082 34459 22 0 4 39 1 0 11 0 4 68 4 0 38 7 12 18 11 10 128 1 0 8 0 16 144 48 31 69 7 0 16 0 1 7 chain 520062 chr7 159345973 + 8239428 8245560 L1PA6 6164 + 0 6156 2272 120 0 1 346 1 0 163 1 7 389 4 11 217 1 0 43 0 1 93 4 0 15 0 2 550 1 0 169 0 1 31 1 2 588 1 2 420 0 1 17 0 1 257 1 0 1164 0 10 28 1 0 193 0 1 715 1 0 409 12 13 176 chain 24285 chr7 159345973 + 8267668 8267945 AluYk4 311 + 0 277 50354 277 chain 113475 chr7 159345973 + 8345869 8347393 THE1B-int 1605 + 0 1605 16614 37 0 2 238 0 1 4 14 11 108 12 0 27 1 26 252 6 7 56 0 1 257 17 18 24 8 5 119 0 55 36 0 1 192 0 12 116 chain 24251 chr7 159345973 + 8347393 8347771 THE1B 368 + 0 368 50414 63 19 20 78 15 14 18 11 1 71 0 1 27 1 0 75 chain 200271 chr7 159345973 + 8351723 8353975 L1HS 6032 + 0 2243 9712 256 1 0 6 9 0 102 0 1 1878 chain 123933 chr7 159345973 + 8373439 8375000 THE1B-int 1605 + 1 1593 14860 175 3 9 245 0 25 324 18 14 72 0 1 42 0 3 682 chain 24646 chr7 159345973 + 8375011 8375386 THE1B 368 + 0 368 49801 13 2 0 34 0 1 60 8 9 52 30 24 20 1 0 81 1 0 21 0 1 52 chain 34780 chr7 159345973 + 8417730 8418204 LTR10F 562 + 0 562 38174 106 0 1 60 5 92 31 11 12 196 3 2 62 chain 26790 chr7 159345973 + 8524575 8524931 THE1A 353 + 0 353 46556 81 3 4 26 1 0 87 1 0 95 2 0 60 chain 124997 chr7 159345973 + 8524931 8526510 THE1A-int 1579 + 0 1579 14703 15 0 2 152 2 1 5 0 1 265 0 1 171 6 5 166 0 1 288 10 7 499 chain 27675 chr7 159345973 + 8526510 8526865 THE1A 353 + 0 353 45362 105 6 5 92 1 0 151 chain 29907 chr7 159345973 + 8587939 8588291 L1PA7 6471 + 5651 6003 42126 352 chain 26354 chr7 159345973 + 8659446 8659740 L1PA5 6144 + 5848 6142 47193 294 chain 33417 chr7 159345973 + 8672103 8672480 L1PA3long 6157 + 5773 6157 39160 232 1 8 144 chain 48077 chr7 159345973 + 8800345 8800889 L1PA3long 6157 + 5605 6149 30266 544 chain 51044 chr7 159345973 + 8803176 8803792 L1PA7 6471 + 5830 6451 29203 308 0 1 43 0 3 260 0 1 5 chain 200414 chr7 159345973 + 8857844 8860042 L1PA3long 6157 + 3953 6155 9709 239 0 3 1027 0 1 681 1 0 110 0 1 140 chain 95680 chr7 159345973 + 8878665 8879805 L1PA5 6144 + 2849 3990 18815 326 6 0 57 0 1 11 0 3 110 3 7 265 7 6 355 chain 119092 chr7 159345973 + 8889943 8891299 SVA_D 2077 + 20 2076 15680 15 3 1 170 0 1 335 0 40 97 1 38 44 0 40 77 0 584 614 chain 116678 chr7 159345973 + 9018132 9019794 HERV17-int 4347 + 15 3879 16104 12 1 0 37 5 8 6 1 0 35 3 0 26 1 0 63 39 38 95 16 450 213 0 4 124 1 4 13 0 3 22 0 3 60 0 2 10 5 4 57 1 0 7 4 6 24 0 77 17 0 3 30 2 0 6 0 6 54 0 1 4 1 0 365 2 1 68 0 2 85 0 1672 147 chain 11290 chr7 159345973 + 9190433 9190733 L1PB1 5432 + 5159 5427 68092 9 2 0 49 21 19 45 1 0 4 62 46 13 10 1 6 0 3 16 1 0 21 1 0 13 1 0 14 1 0 5 1 0 4 chain 96079 chr7 159345973 + 9245028 9246104 L1PA5 6144 + 5067 6141 18767 824 1 0 141 1 0 109 chain 29761 chr7 159345973 + 9257672 9257993 AluYb8 318 + 0 318 42286 132 3 0 186 chain 7521 chr7 159345973 + 9281666 9281916 MLT1A 405 + 122 387 76076 16 144 159 90 chain 177238 chr7 159345973 + 9427971 9429899 L1PA2 6032 + 4102 6030 10715 1928 chain 522739 chr7 159345973 + 9436392 9442260 L1PA4 6152 + 0 5880 2151 115 0 1 5 1 0 1123 1 0 1558 0 4 175 0 1 2040 0 6 148 0 1 134 0 1 568 chain 28777 chr7 159345973 + 9467817 9468240 LTR7B 505 + 0 496 43662 105 0 10 69 6 13 18 0 26 8 3 1 18 0 33 61 1 0 72 0 1 6 17 16 39 chain 18275 chr7 159345973 + 9470691 9471049 LTR7 482 + 1 476 58389 22 13 36 42 70 162 44 0 1 107 17 18 43 chain 9447 chr7 159345973 + 9513250 9513494 MER44A 345 + 0 251 71612 13 3 0 6 67 81 5 3 0 79 7 0 36 7 13 18 chain 26022 chr7 159345973 + 9554438 9554793 THE1A 353 + 0 353 47684 110 1 0 92 5 7 8 3 0 136 chain 83929 chr7 159345973 + 9595417 9596311 L1HS 6032 + 5130 6024 20824 894 chain 5411 chr7 159345973 + 9596347 9596411 THE1D-int 1627 + 275 339 83657 64 chain 52145 chr7 159345973 + 9656800 9657389 L1P2 5180 + 1615 2205 28831 356 0 1 233 chain 4534 chr7 159345973 + 9674208 9674264 FordPrefect 1504 + 663 719 88145 56 chain 126366 chr7 159345973 + 9701113 9702648 L1PA6 6164 + 4498 6162 14499 4 1 0 302 9 1 338 0 128 23 14 22 236 0 1 469 0 1 139 chain 4638 chr7 159345973 + 9735430 9735495 MER53 195 - 109 171 87604 13 3 0 49 chain 62947 chr7 159345973 + 9740021 9740705 L1PA3long 6157 + 3783 4467 25644 684 chain 78936 chr7 159345973 + 9746155 9747084 L1PA5 6144 + 4448 5377 21890 534 0 11 150 2 0 166 15 6 62 chain 35107 chr7 159345973 + 9809379 9809761 L1PA2 6032 + 5650 6032 37951 382 chain 108340 chr7 159345973 + 9843692 9844888 L1PA4 6152 + 4938 6135 17274 753 0 1 443 chain 13544 chr7 159345973 + 9896485 9896675 L1MA2 4263 + 3240 3423 64259 73 11 4 106 chain 93407 chr7 159345973 + 9903287 9925025 L1PA7 6471 + 3556 5173 19127 113 0 4 248 0 2 50 2 9 18 6 0 5 27 0 261 20108 0 34 0 1 163 6 7 11 1 0 5 0 1 186 0 4 24 0 1 470 chain 16038 chr7 159345973 + 9923891 9924092 L1PA7 6471 + 4031 4232 60978 26 1 0 7 0 1 167 chain 54897 chr7 159345973 + 9989987 9990594 L1PA3long 6157 + 5550 6157 27907 607 chain 18954 chr7 159345973 + 10044277 10044498 L1PA7 6471 + 6249 6470 57590 221 chain 318105 chr7 159345973 + 10049535 10053480 L1PA7 6471 + 2506 6465 6442 13 0 2 117 1 2 50 1 4 253 6 15 114 1 0 287 0 1 4 1 0 12 0 1 110 13 6 77 0 5 41 0 3 468 0 7 148 1 0 230 0 1 421 8 0 576 1 2 145 1 0 474 0 1 206 7 8 13 0 1 4 1 0 131 3 0 6 chain 2971 chr7 159345973 + 10068530 10068598 L1MC2 1988 + 192 261 100184 14 21 22 33 chain 2820 chr7 159345973 + 10086962 10086992 MER39 703 + 608 638 101525 30 chain 275469 chr7 159345973 + 10168424 10171419 L1HS 6032 + 826 3830 7569 269 0 9 2726 chain 5655 chr7 159345973 + 10187280 10187561 L1MA3 4352 + 4038 4311 82530 48 139 114 17 25 43 22 11 10 19 chain 23424 chr7 159345973 + 10229147 10229480 THE1B 368 + 16 368 51717 90 8 20 46 7 6 122 11 19 49 chain 276814 chr7 159345973 + 10248531 10252550 L1PA10 4194 + 175 4140 7527 12 2 0 11 7 2 6 2 0 10 44 36 19 4 2 13 40 32 17 2 0 21 1 0 7 18 8 9 1 0 14 4 0 9 1 0 15 1 0 54 6 7 5 2 0 584 0 1 227 1 2 51 0 4 67 0 10 84 10 11 12 9 8 104 44 46 72 3 2 342 0 1 4 1 0 112 0 4 24 1 0 239 44 29 86 6 2 10 0 1 387 3 4 103 1 3 187 4 5 99 0 1 237 0 4 149 31 15 186 0 1 78 1 2 32 4 1 23 chain 527766 chr7 159345973 + 10270217 10276183 L1PA4 6152 + 0 5977 1927 708 0 1 9 0 1 16 0 1 932 0 1 149 0 1 1355 1 0 106 4 6 904 0 1 127 0 1 658 0 1 144 1 2 616 1 2 235 chain 55357 chr7 159345973 + 10289307 10290035 L1PB1 5432 + 3431 4141 27758 12 0 1 116 12 14 140 36 16 165 1 0 246 chain 3935 chr7 159345973 + 10294389 10294439 MLT1D 503 + 89 145 91865 44 0 6 6 chain 2902 chr7 159345973 + 10306547 10306579 MER11B 1079 + 146 178 100834 32 chain 21556 chr7 159345973 + 10360963 10361232 THE1D-int 1627 + 0 269 54433 269 chain 22941 chr7 159345973 + 10361249 10361580 L1PA8 5853 + 5477 5803 52460 42 8 9 36 1 0 46 2 0 68 2 1 61 2 1 19 1 0 43 chain 511737 chr7 159345973 + 10372560 10378698 L1PA6 6164 + 1 6162 2675 236 0 2 23 1 0 205 1 0 50 0 2 48 1 0 177 20 21 22 0 17 450 1 0 134 0 2 783 1 0 160 0 1 862 5 6 194 1 0 107 1 5 191 7 1 859 0 1 92 6 11 370 0 1 480 4 1 500 0 1 146 chain 49475 chr7 159345973 + 10390584 10391268 MER4E 760 + 0 760 29776 24 2 0 124 25 28 55 0 69 67 0 4 75 1 0 3 0 5 74 10 8 224 chain 133656 chr7 159345973 + 10447122 10448734 L1PA7 6471 + 4826 6446 13676 369 0 1 135 3 2 291 2 1 512 1 0 223 8 9 17 0 9 51 chain 10660 chr7 159345973 + 10498973 10500000 L1PA10 4194 + 1624 2665 19574 100 0 1 34 2 0 6 0 3 454 0 4 19 2 3 44 6 5 246 0 4 18 1 4 58 16 17 21 chain 517846 chr7 159345973 + 10500970 10506925 L1PA5 6144 + 10 5969 2373 856 0 2 3195 0 1 1685 1 0 21 0 2 197 chain 4547 chr7 159345973 + 10507264 10507702 L1PA10 4194 + 3702 4143 19574 380 38 41 20 chain 67904 chr7 159345973 + 10526687 10527435 L1PA4 6152 + 5403 6151 24470 748 chain 464626 chr7 159345973 + 10527488 10536485 L1PA8A 6298 + 80 6292 4003 21 3 0 18 83 70 15 57 61 40 31 25 5 0 3 4 0 1 64 2 0 17 1 0 8 1 0 3 1 0 131 17 10 7 0 7 24 24 13 277 0 1 135 1 4 46 0 1 40 10 5 27 0 1 81 0 1 550 0 1 254 7 8 451 1 0 171 1 0 99 33 7 76 2 0 555 0 4 24 0 3 175 0 3 77 0 1 90 0 1 75 0 1 22 21 0 233 1 3 682 1 2 529 0 35 415 2763 0 28 7 8 121 6 7 117 1 2 101 17 18 97 chain 233263 chr7 159345973 + 10533228 10535987 L1P1 4361 + 8 2781 8658 701 5 9 152 0 1 10 0 9 1891 chain 39999 chr7 159345973 + 10550951 10551494 MLT2A2 560 + 0 560 34660 186 8 12 56 2 1 74 15 16 61 0 11 55 1 3 85 chain 141219 chr7 159345973 + 10566445 10568013 L1PA3long 6157 + 4581 6157 13007 1434 3 2 22 0 8 54 0 1 55 chain 13957 chr7 159345973 + 10583782 10583977 Tigger1 2417 + 2117 2327 63658 27 4 20 51 1 0 112 chain 51921 chr7 159345973 + 10586338 10586935 L1PA6 6164 + 5564 6162 28902 459 0 1 138 chain 405645 chr7 159345973 + 10626894 10631824 L1PA7 6471 + 1513 6466 5079 206 3 17 613 11 10 66 1 2 62 0 1 142 12 0 43 1 0 874 0 4 107 5 6 134 0 15 20 0 1 193 18 20 699 0 1 236 1 0 636 1 0 80 1 0 765 chain 28566 chr7 159345973 + 10653872 10654169 AluYd8 298 + 0 297 44007 297 chain 405605 chr7 159345973 + 10685281 10690766 L1PB1 5432 + 36 5420 5081 567 1 2 119 4 5 33 0 1 170 2 0 5 0 2 137 8 9 161 0 1 154 7 0 18 0 3 6 23 21 157 13 19 781 0 2 86 7 8 339 1 0 170 1 2 76 0 12 48 0 1 90 0 1 244 8 7 235 1 4 371 7 5 518 3 0 18 85 0 61 0 2 97 0 7 222 4 6 64 3 0 12 11 0 23 1 0 9 1 0 5 29 23 45 2 1 9 7 6 41 8 7 12 25 12 18 8 5 15 2 0 24 2 1 20 1 0 13 1 0 16 chain 38899 chr7 159345973 + 10693537 10693992 L1PA6 6164 + 5552 6010 35430 184 0 2 205 0 1 66 chain 12846 chr7 159345973 + 10693994 10694147 L1PA6 6164 + 6011 6162 65360 143 2 0 8 chain 504808 chr7 159345973 + 10695593 10702015 L1PA7 6471 + 0 6468 2980 135 17 20 80 8 9 8 0 7 145 2 0 69 1 0 104 27 24 120 10 13 51 1 0 368 2 1 55 47 71 4 1 0 21 0 3 279 2 0 717 2 1 333 0 3 701 7 6 42 1 0 4 0 1 108 2 0 16 0 1 9 2 1 40 0 3 130 0 2 960 9 11 308 6 7 17 3 4 608 0 4 62 6 10 42 0 1 52 1 0 677 chain 323951 chr7 159345973 + 10741626 10745742 L1P3 4156 + 8 4139 6339 132 4 8 101 1 0 7 14 6 60 1 0 888 0 4 52 8 9 282 12 13 67 0 1 118 6 5 223 0 1 490 5 13 110 1 2 21 5 9 467 0 4 263 0 1 123 8 6 20 0 1 105 0 1 205 0 4 145 1 0 26 10 6 100 2 0 7 2 1 24 chain 499992 chr7 159345973 + 10747087 10753227 L1PA5 6144 + 0 6142 3126 120 0 14 42 0 1 73 9 6 217 5 6 473 25 0 217 9 0 39 1 2 13 0 1 455 1 0 166 13 29 374 0 2 48 8 3 354 2 3 518 1 0 468 51 0 7 0 57 239 7 5 352 0 1 739 0 7 646 1 2 436 4 0 7 chain 10629 chr7 159345973 + 10753418 10753539 L1PA7 6471 + 5478 5599 69174 121 chain 71823 chr7 159345973 + 10753539 10754405 L1PA7 6471 + 5603 6470 23587 18 2 0 620 0 2 194 0 4 18 2 0 7 1 0 4 chain 84975 chr7 159345973 + 10777789 10778733 L1PA5 6144 + 5199 6143 20624 944 chain 195109 chr7 159345973 + 10827854 10830534 MER57-int 2662 + 42 2646 9883 28 62 43 75 4 9 118 2 0 378 15 0 120 2 0 133 2 0 146 4 0 312 2 0 58 2 1 445 3 0 35 0 1 384 2 1 90 23 17 63 29 18 26 1 0 7 9 0 8 0 5 20 22 16 25 4 1 21 chain 25266 chr7 159345973 + 10830552 10830944 MER57A1 433 + 0 407 48842 113 7 10 66 0 11 72 49 50 85 chain 29356 chr7 159345973 + 10833509 10833934 L1PA16 3655 + 3148 3571 42799 56 1 0 50 0 1 33 16 14 49 3 4 54 4 3 159 chain 190839 chr7 159345973 + 10877834 10881830 L1PA11 4918 + 1633 4578 10075 139 1 0 40 1 2 106 0 1 135 2 1 90 0 1 116 28 27 32 320 0 29 4 3 4 0 1 97 0 6 82 2 0 83 2 1 111 0 1 150 0 1 302 22 24 64 0 1 67 6 5 190 1 0 16 968 213 241 0 3 64 4 27 71 0 5 128 6 14 68 14 13 60 14 12 8 1 0 19 47 33 14 1 0 13 2 0 11 chain 12547 chr7 159345973 + 10893478 10893626 THE1D 372 + 224 372 65904 148 chain 4077 chr7 159345973 + 10894443 10894489 L2a 937 + 271 317 90903 46 chain 79796 chr7 159345973 + 10895950 10897077 L1MA2 4263 + 2436 3536 21664 103 38 0 7 0 8 60 33 31 19 14 15 355 0 2 228 0 1 51 0 1 219 chain 7657 chr7 159345973 + 10901987 10902072 HY3 101 + 15 100 75731 85 chain 182838 chr7 159345973 + 10925057 10927696 Harlequin-int 5206 + 135 2467 10445 14 5 1 136 0 3 5 4 0 158 3 1 30 6 0 78 1 4 117 1 0 16 6 7 56 320 0 529 2 0 58 0 1 215 2 1 30 11 22 252 11 26 49 2 0 490 4 5 28 chain 31096 chr7 159345973 + 10928245 10928694 LTR10F 562 + 0 514 41057 22 0 1 83 0 1 19 25 1 19 7 0 7 1 57 8 0 14 9 0 24 146 0 1 4 1 0 98 chain 35684 chr7 159345973 + 10972816 10973479 MER51A 677 + 0 661 37611 60 1 0 110 13 76 15 5 6 39 75 2 21 8 14 82 4 7 64 0 3 34 23 27 16 16 8 77 chain 274695 chr7 159345973 + 11193777 11197496 MER61-int 3695 + 0 3695 7586 13 0 4 11 5 1 17 1 0 49 5 4 143 4 1 28 2 1 39 8 12 78 105 62 84 0 1 94 2 0 8 3 0 490 0 1 67 1 2 12 0 3 25 0 1 341 1 0 501 9 7 31 2 1 31 0 4 16 0 3 34 0 3 160 0 1 149 0 1 231 1 0 58 0 1 39 1 0 37 1 0 241 16 14 9 0 1 250 1 0 115 10 9 10 1 0 4 0 1 105 0 16 20 chain 14985 chr7 159345973 + 11270352 11270794 LTR49 580 + 106 580 62282 26 2 0 5 40 34 27 70 99 14 2 0 35 1 31 36 65 53 65 0 1 29 7 1 18 chain 262690 chr7 159345973 + 11394855 11398554 L1PA7 6471 + 2343 6470 7890 289 4 0 89 0 1 271 317 0 71 13 9 42 0 1 127 4 0 169 1 5 44 0 5 42 0 4 199 0 4 286 11 10 335 3 721 117 9 13 272 0 5 144 1 4 60 0 1 17 0 2 194 22 36 383 1 2 47 13 4 102 chain 69317 chr7 159345973 + 11399545 11400318 L1PA5 6144 + 5368 6141 24157 773 chain 5096 chr7 159345973 + 11413321 11413385 MER72 723 + 30 94 85178 64 chain 11103 chr7 159345973 + 11425951 11426070 L1HS 6032 + 5912 6031 68403 119 chain 13033 chr7 159345973 + 11439310 11439517 Tigger1 2417 + 54 263 65063 21 37 36 97 0 3 52 chain 10662 chr7 159345973 + 11441696 11441830 L1PA7 6471 + 6177 6310 69111 98 2 1 34 chain 13035 chr7 159345973 + 11441832 11441992 L1PA7 6471 + 6310 6467 65055 149 3 0 8 chain 64172 chr7 159345973 + 11443938 11444758 L1PA6 6164 + 5285 6162 25376 29 0 8 482 7 55 158 3 4 141 chain 82456 chr7 159345973 + 11500137 11503493 L1PA14 3548 + 100 3440 21141 46 34 23 48 1 0 20 2 1 7 0 12 11 2 0 29 4 2 153 2 1 155 1965 1976 155 0 3 143 17 8 47 2 0 11 1 0 2 1 0 47 9 6 103 13 9 13 9 6 84 1 0 46 0 1 65 2 1 7 4 0 20 17 18 11 1 0 6 1 0 18 1 0 14 0 6 6 chain 1123 chr7 159345973 + 11510028 11510180 L1PB1 5432 + 4949 5101 50601 152 chain 184786 chr7 159345973 + 11510183 11512311 L1PA5 6144 + 3390 5510 10352 633 14 5 160 0 1 1321 chain 2616 chr7 159345973 + 11512940 11513294 L1PB1 5432 + 5101 5417 50601 2 5 0 14 3 1 29 16 11 9 2 0 50 9 8 12 1 0 44 1 0 15 1 0 4 2 0 11 9 0 16 13 10 9 2 0 24 1 0 21 1 0 13 1 0 9 1 0 4 chain 9202 chr7 159345973 + 11568833 11568992 L1MA4 2864 + 959 1114 72118 8 1 0 21 2 0 4 2 0 56 17 18 48 chain 33508 chr7 159345973 + 11593896 11594340 MLT2A1 477 + 0 477 39086 109 0 1 57 6 3 209 8 43 55 chain 436105 chr7 159345973 + 11594340 11599730 HERVL-int 5654 + 0 5652 4642 94 0 3 120 5 6 99 0 1 79 3 0 536 2 5 175 1 0 46 0 1 138 0 1 398 0 2 207 0 1 631 0 1 215 8 0 248 3 4 693 0 1 526 3 360 405 157 58 598 chain 32254 chr7 159345973 + 11599732 11600164 MLT2A1 477 + 0 477 40143 168 5 2 201 0 4 7 0 2 9 2 44 40 chain 106850 chr7 159345973 + 11602879 11604038 L1PA2 6032 + 4870 6029 17453 1159 chain 24187 chr7 159345973 + 11617699 11617997 L1PA5 6144 + 5817 6144 50515 8 0 1 59 1 29 230 chain 7951 chr7 159345973 + 11627154 11627247 L1PA8 5853 + 5760 5853 74999 93 chain 505089 chr7 159345973 + 11674973 11681392 L1PA7 6471 + 3 6465 2966 145 0 6 6 5 0 243 0 4 508 5 6 130 11 0 6 1 12 193 0 1 265 1 0 463 0 2 54 16 16 422 12 22 125 20 0 76 0 3 39 10 91 301 1 2 359 1 0 26 1 0 307 1 0 206 5 6 4 1 0 616 0 4 524 10 5 120 13 0 10 0 13 1049 40 4 68 chain 73629 chr7 159345973 + 11722651 11723477 L1PA4 6152 + 5315 6143 23188 459 0 1 122 0 1 245 chain 28511 chr7 159345973 + 11777867 11778182 AluYa5 310 + 0 307 44110 126 8 0 181 chain 21364 chr7 159345973 + 11780804 11781027 AluYb8 318 + 95 318 54688 223 chain 18294 chr7 159345973 + 11863834 11864029 L1PA3long 6157 + 5962 6157 58369 195 chain 48461 chr7 159345973 + 11882741 11883535 L1PA13 3608 + 2778 3548 30132 66 0 9 110 13 8 118 0 1 38 1 0 32 6 8 72 1 0 32 3 1 9 0 1 49 9 8 16 1 0 40 2 0 40 16 12 18 1 0 26 3 0 12 5 0 14 15 7 10 1 0 6 2 0 7 chain 19391 chr7 159345973 + 11887916 11888150 THE1B-int 1605 + 0 234 57138 234 chain 24173 chr7 159345973 + 11984618 11984879 AluYa5 310 + 40 300 50536 92 1 0 168 chain 6079 chr7 159345973 + 12018270 12018344 Tigger1 2417 + 168 243 80808 25 0 1 49 chain 150968 chr7 159345973 + 12069685 12072811 HERVIP10F-int 4088 + 429 3407 12292 6 1 0 7 1 0 17 1 0 16 108 95 34 10 7 7 1 0 10 3 1 29 2 1 14 1 0 7 1 0 28 9 6 47 1 0 4 4 2 26 6 5 9 1 0 59 1 0 5 1 0 26 97 80 7 1 0 30 1 0 41 2 0 10 2 1 7 1 0 14 1 0 5 15 11 21 2 0 8 1 0 22 1 0 14 1 0 41 1 0 24 0 6 107 34 22 24 1 0 12 1 0 5 1 0 22 1 0 31 1 0 33 0 1 25 66 63 27 8 7 25 17 14 139 0 15 254 2 1 20 8 7 57 2 1 37 0 1 45 1 0 56 0 1 21 14 12 134 2 1 241 0 14 180 33 3 13 0 30 27 2 0 6 34 33 58 64 41 23 1 0 9 71 58 7 1 0 13 13 9 16 26 22 13 41 29 11 46 33 14 1 0 4 1 0 11 1 0 6 21 12 12 chain 28718 chr7 159345973 + 12092577 12093143 LTR18B 584 + 0 569 43760 76 21 22 87 0 2 13 0 13 17 0 6 41 31 38 62 70 67 7 14 0 52 0 1 20 10 0 29 0 1 4 1 0 11 chain 37278 chr7 159345973 + 12134764 12135175 L1PA3long 6157 + 5746 6157 36565 411 chain 300513 chr7 159345973 + 12141725 12145091 L1PA4 6152 + 2764 6152 6813 983 0 8 440 0 1 789 0 1 137 0 1 68 0 8 290 0 3 659 chain 2839 chr7 159345973 + 12175964 12175999 L1ME1 1623 + 1134 1169 101322 35 chain 171254 chr7 159345973 + 12182435 12184316 L1PA3long 6157 + 3202 5083 11035 1439 1 0 124 0 1 317 chain 334845 chr7 159345973 + 12251273 12255279 L1PA7 6471 + 2139 6459 6145 502 21 7 57 0 2 332 0 8 1204 1 2 410 0 312 651 0 6 123 0 1 42 2 1 128 2 0 380 1 2 150 chain 46738 chr7 159345973 + 12313210 12313744 L1PA2 6032 + 5499 6028 30753 86 4 0 304 7 0 114 0 6 19 chain 145195 chr7 159345973 + 12347625 12349234 L1PA3long 6157 + 4547 6155 12675 579 1 0 1029 chain 34754 chr7 159345973 + 12461833 12462264 L1PA8A 6298 + 5858 6291 38184 219 1 2 152 0 1 59 chain 247023 chr7 159345973 + 12497211 12500000 L1HS 6032 + 0 2785 8303 149 1 3 5 2 0 100 1 0 5 9 0 102 0 1 1747 4 9 664 chain 259202 chr7 159345973 + 12500000 12502832 L1PA3long 6157 + 2913 5746 7993 232 0 1 2600 chain 61161 chr7 159345973 + 12506074 12506797 L1PA6 6164 + 5437 6159 26069 296 0 1 419 2 0 6 chain 126321 chr7 159345973 + 12515484 12517060 THE1A-int 1579 + 1 1579 14506 169 1 0 5 2 3 463 9 11 4 0 1 824 1 0 98 chain 15835 chr7 159345973 + 12600159 12600457 L1PB1 5432 + 5122 5392 61241 15 1 0 7 1 0 13 18 11 52 2 1 16 1 0 59 2 0 6 15 6 15 2 0 9 1 0 14 2 0 24 1 0 22 chain 30456 chr7 159345973 + 12659787 12660201 LTR7B 505 + 0 486 41623 104 0 10 61 0 38 12 3 27 28 0 2 83 1 0 76 23 22 23 chain 13603 chr7 159345973 + 12663545 12663699 HERVH-int 3825 + 3671 3825 64161 154 chain 27451 chr7 159345973 + 12665129 12665584 LTR7B 505 + 0 495 45636 108 0 10 66 69 14 14 0 88 65 1 0 76 14 13 29 1 0 12 chain 124979 chr7 159345973 + 12676045 12677515 L1P2 5180 + 1140 2610 14707 38 0 1 69 1 0 196 4 5 401 3 1 476 2 0 30 0 3 32 0 1 159 1 0 58 chain 5719 chr7 159345973 + 12752521 12752588 MER41A 554 + 398 466 82262 29 0 1 38 chain 21189 chr7 159345973 + 12791320 12791609 AluSc8 310 + 0 292 54904 46 0 7 70 20 23 140 7 0 6 chain 452649 chr7 159345973 + 12839567 12845708 L1PA7 6471 + 57 6466 4314 60 95 94 15 177 374 125 1 11 57 1 76 19 15 15 121 12 11 11 0 21 274 17 16 4 0 1 902 0 1 302 5 6 62 15 0 6 7 0 537 0 2 259 3 0 397 1 2 42 0 2 215 1 5 416 7 8 188 0 3 759 32 0 144 2 1 74 8 9 155 0 3 6 1 0 437 0 2 8 7 6 36 0 6 103 chain 14476 chr7 159345973 + 12876683 12876882 7SK 245 + 0 240 62924 113 15 56 71 chain 8403 chr7 159345973 + 12891463 12891801 MLT1A0 366 + 30 366 73895 30 28 27 56 185 184 39 chain 17754 chr7 159345973 + 12931838 12932053 THE1A-int 1579 + 0 215 58947 215 chain 12679 chr7 159345973 + 13011336 13011527 MSTA 426 + 208 408 65661 15 7 8 69 10 18 90 chain 90438 chr7 159345973 + 13025042 13026047 L1PA3long 6157 + 5154 6157 19599 134 1 0 19 1 0 850 chain 8357 chr7 159345973 + 13035845 13035973 MSTB-int 1649 + 348 476 74010 72 14 14 42 chain 12408 chr7 159345973 + 13095247 13095405 L1PA8A 6298 + 6131 6290 66125 142 1 2 15 chain 149986 chr7 159345973 + 13101974 13103665 SVA_D 2077 + 55 2056 12349 632 0 40 163 0 269 28 0 1 200 0 1 4 9 8 655 chain 12064 chr7 159345973 + 13113020 13113200 MER30 238 + 38 236 66733 66 7 0 6 3 28 98 chain 80417 chr7 159345973 + 13135932 13136977 MER11C 1089 + 0 1074 21541 264 0 3 48 5 22 253 8 9 166 6 7 12 0 8 258 11 10 14 chain 3321 chr7 159345973 + 13289124 13289161 MER57B1 401 + 294 331 96840 37 chain 7146 chr7 159345973 + 13296470 13296630 L1MA4 2864 + 2551 2738 77115 83 20 17 12 31 61 14 chain 30031 chr7 159345973 + 13305930 13306304 L1PA8 5853 + 5016 5389 42024 55 0 1 148 3 1 168 chain 8986 chr7 159345973 + 13310098 13310207 MER57A1 433 + 324 433 72590 109 chain 17240 chr7 159345973 + 13355996 13356293 MER4B 649 + 271 622 59541 11 10 9 63 3 47 22 28 28 57 0 8 63 0 1 19 1 3 20 chain 60958 chr7 159345973 + 13378788 13379497 L1PA5 6144 + 5438 6144 26122 246 2 1 318 2 0 141 chain 107067 chr7 159345973 + 13390389 13391705 L1PA7 6471 + 5107 6433 17427 42 4 6 41 2 1 402 0 4 18 1 3 50 0 2 25 3 1 288 0 3 314 2 1 5 0 1 119 chain 381905 chr7 159345973 + 13489844 13495217 L1PB1 5432 + 62 5430 5454 92 17 9 84 1 2 147 4 6 4 0 1 317 0 9 606 0 1 55 1 0 7 2 0 5 24 11 26 7 8 150 0 1 52 5 7 251 0 2 357 0 6 216 19 6 84 1 3 10 27 29 107 6 5 100 1 4 363 1 0 22 1 35 224 2 1 5 0 1 229 2 0 105 1 2 382 1 0 30 0 1 73 0 1 44 0 1 24 2 1 67 0 2 171 3 0 70 0 1 87 59 57 262 3 2 9 3 0 24 26 20 9 2 0 11 8 13 29 3 2 9 7 6 43 1 0 15 24 14 17 29 23 24 1 0 18 1 0 13 1 0 16 1 0 4 1 0 6 chain 10208 chr7 159345973 + 13502772 13502981 MLT2C2 476 + 40 253 69997 55 1 0 40 1 0 8 0 1 4 1 0 9 52 58 38 chain 12286 chr7 159345973 + 13612853 13613008 L1PA8A 6298 + 6125 6281 66305 56 1 2 98 chain 46633 chr7 159345973 + 13621478 13621990 L1PA3long 6157 + 5644 6157 30804 179 0 1 333 chain 24774 chr7 159345973 + 13623568 13623833 AluYa5 310 + 45 309 49627 87 1 0 177 chain 55557 chr7 159345973 + 13675111 13675918 L1PB3 3668 + 2124 2915 27701 143 28 2 278 0 4 40 0 1 75 1 0 89 27 29 6 0 1 4 1 0 11 3 4 78 0 3 23 chain 2375 chr7 159345973 + 13681502 13681563 L1MC1 2226 + 1960 2016 104240 17 22 17 22 chain 4836 chr7 159345973 + 13686380 13686439 Tigger3c 601 + 510 569 86513 59 chain 40861 chr7 159345973 + 13691647 13692190 MLT2A2 560 + 0 559 34051 186 5 9 113 0 1 88 5 16 146 chain 22720 chr7 159345973 + 13728432 13728711 THE1B 368 + 13 306 52801 33 0 15 108 1 0 137 chain 22011 chr7 159345973 + 13733869 13734113 L1PA2 6032 + 5778 6029 53818 96 0 1 137 0 6 11 chain 398634 chr7 159345973 + 13765644 13770018 L1PA2 6032 + 2 6032 5173 254 1 0 318 0 1 122 0 7 737 0 1649 2942 chain 124543 chr7 159345973 + 13803156 13806250 L1PA7 6471 + 32 3145 3363 275 0 18 86 5 3 148 0 1 108 2 1 110 0 1 734 0 1 473 0 2 271 0 1 62 1 0 314 1 0 504 chain 550901 chr7 159345973 + 13806269 13812292 L1PA2 6032 + 4 6031 686 253 1 0 871 0 3 80 0 1 1733 0 1 614 2 1 2043 0 1 426 chain 123697 chr7 159345973 + 13812313 13815386 L1PA7 6471 + 3145 6196 3363 215 75 0 133 5 4 32 1 0 307 1 0 163 4 0 794 0 1 273 0 11 158 0 10 297 0 1 70 0 3 95 0 31 442 0 3 8 chain 29522 chr7 159345973 + 13816877 13817237 THE1B-int 1605 + 1234 1605 42584 215 0 11 145 chain 25147 chr7 159345973 + 13817241 13817587 THE1B 368 + 4 366 49035 32 14 29 109 2 1 25 0 2 164 chain 20777 chr7 159345973 + 13918395 13918619 L1PA2 6032 + 5534 5758 55394 224 chain 24841 chr7 159345973 + 13918619 13918887 L1PA2 6032 + 5764 6032 49529 268 chain 24337 chr7 159345973 + 14015949 14016238 AluYk4 311 + 7 296 50269 289 chain 69705 chr7 159345973 + 14044504 14045283 L1PA4 6152 + 4516 5295 24073 779 chain 16734 chr7 159345973 + 14062431 14062640 L1PA7 6471 + 6263 6467 60119 198 5 0 6 chain 9818 chr7 159345973 + 14063051 14063173 THE1C 375 + 154 282 70786 47 0 3 51 0 3 24 chain 62827 chr7 159345973 + 14066837 14067610 LTR17 781 + 0 774 25675 326 2 1 41 7 9 397 chain 138604 chr7 159345973 + 14160123 14161826 L1PA7 6471 + 4307 6470 13215 264 1 0 7 0 1 105 10 22 36 5 1 46 8 0 23 1 5 45 0 3 216 4 0 45 0 462 33 1 0 128 1 0 392 4 0 10 0 1 318 chain 4469 chr7 159345973 + 14168389 14168572 L1MEf 1413 + 654 836 88500 23 105 106 22 2 0 31 chain 159937 chr7 159345973 + 14184790 14187003 L1PB1 5432 + 3229 5417 11759 381 14 19 96 7 13 168 0 1 28 2 0 233 0 1 46 1 0 399 7 8 91 0 1 22 0 1 67 4 0 88 3 2 209 1 2 9 3 0 24 28 22 9 3 1 50 2 1 10 7 6 44 1 0 15 3 0 7 14 5 19 8 6 13 2 0 24 1 0 21 1 0 13 1 0 9 1 0 4 chain 538646 chr7 159345973 + 14278870 14285021 L1PA3long 6157 + 1 6157 1418 152 0 1 510 136 9 95 8 136 142 1 0 4264 0 4 843 chain 11922 chr7 159345973 + 14279532 14279664 L1PA3long 6157 - 4281 4413 65552 132 chain 206189 chr7 159345973 + 14296581 14299111 L1PA7 6471 + 3343 5878 9495 141 1 2 11 1 0 20 28 14 11 0 4 340 0 1 120 1 2 1347 0 14 247 7 6 122 1 0 42 0 1 90 chain 7829 chr7 159345973 + 14312900 14313260 Charlie1a 1436 + 737 1103 75298 18 170 176 45 59 60 4 1 0 63 chain 543596 chr7 159345973 + 14313261 14319290 L1PA3long 6157 + 0 6150 1102 151 1 2 109 9 0 76 0 1 429 8 136 4776 1 0 5 0 1 464 chain 160255 chr7 159345973 + 14358514 14360452 L1PA6 6164 + 4213 6152 11736 159 0 2 175 0 6 94 1 0 50 4 0 111 23 7 301 0 1 29 0 1 166 1 0 98 0 3 52 1 2 264 0 1 373 1 9 35 chain 17999 chr7 159345973 + 14416475 14416799 THE1B 368 + 6 368 58652 102 8 9 60 46 84 45 17 16 46 chain 382973 chr7 159345973 + 14458401 14463106 L1PA7 6471 + 0 5324 5427 373 4 0 29 0 2 476 0 1 30 0 604 339 0 6 282 1 0 499 6 1 356 0 1 97 0 4 384 9 2 43 5 2 18 0 4 12 6 9 255 1 0 778 0 2 9 4 3 51 0 4 105 0 10 533 chain 118897 chr7 159345973 + 14472555 14474094 THE1B-int 1605 + 27 1596 15727 238 0 2 61 2 9 95 0 25 144 1 0 577 1 0 92 1 0 50 10 9 267 chain 23023 chr7 159345973 + 14474103 14474459 THE1B 368 + 0 368 52326 14 36 51 101 7 6 20 4 0 108 0 2 66 chain 3091 chr7 159345973 + 14483973 14484014 MLT1D 503 + 461 502 98860 41 chain 52217 chr7 159345973 + 14509240 14509827 LTR14C 587 + 0 587 28812 587 chain 14340 chr7 159345973 + 14590008 14590173 L1HS 6032 + 5867 6029 63130 147 3 0 15 chain 548684 chr7 159345973 + 14647630 14653668 L1PA2 6032 + 0 6030 826 256 1 0 3354 1 0 1526 3 0 120 1 0 763 2 0 11 chain 61513 chr7 159345973 + 14659538 14661892 L1PA3long 6157 + 3463 5834 25982 1110 0 17 1244 chain 29387 chr7 159345973 + 14696211 14696531 AluYb8 318 + 0 318 42755 132 2 0 186 chain 506126 chr7 159345973 + 14704479 14709979 L1PA2 6032 + 0 6032 2925 96 0 524 631 0 1 277 0 3 2697 0 4 1799 chain 40880 chr7 159345973 + 14770760 14771410 PABL_B 668 + 0 651 34041 213 21 65 10 46 0 36 8 9 17 2 1 63 2 0 21 1 4 80 0 2 130 chain 58156 chr7 159345973 + 14771522 14772277 MER4E 760 + 0 753 26918 24 0 1 65 3 0 60 25 27 356 2 1 80 1 0 139 chain 4557 chr7 159345973 + 14775422 14775502 MADE1 96 - 0 96 88033 30 13 29 37 chain 26439 chr7 159345973 + 14777370 14777717 THE1C 375 + 0 350 47069 135 0 4 43 5 4 164 chain 13746 chr7 159345973 + 14875727 14875935 MER30 238 + 20 233 63954 5 3 0 85 22 31 23 1 0 69 chain 66809 chr7 159345973 + 14983290 14984070 L1PA8 5853 + 4033 4814 24744 533 0 1 247 chain 4490 chr7 159345973 + 15013540 15013592 LTR47A 437 + 0 52 88395 52 chain 37081 chr7 159345973 + 15025377 15025846 MER4A1 472 + 0 471 36693 133 1 0 92 6 7 110 0 2 127 chain 46072 chr7 159345973 + 15054384 15054956 LTR6B 557 + 0 557 31030 47 1 0 312 0 1 37 18 0 98 0 1 4 0 1 33 0 1 22 chain 76655 chr7 159345973 + 15064789 15065656 L1P1 4361 + 2975 3843 22403 192 0 1 675 chain 10992 chr7 159345973 + 15119215 15119395 MSTA 426 + 218 405 68565 27 19 18 36 10 18 88 chain 49061 chr7 159345973 + 15121615 15122263 L1PA8 5853 + 4379 5053 29926 65 3 6 75 0 14 12 0 5 6 8 3 94 15 23 52 1 0 273 0 2 44 chain 54673 chr7 159345973 + 15126525 15127290 MER4E 760 + 0 760 27984 26 3 0 24 0 1 97 1 11 7 1 0 5 0 9 8 25 10 25 3 0 48 0 1 91 1 3 78 1 0 89 7 1 189 1 2 35 chain 34415 chr7 159345973 + 15153974 15154424 L1PB1 5432 + 3409 3857 38418 318 7 5 125 chain 3919 chr7 159345973 + 15161755 15161800 MLT2D 439 + 394 439 91975 45 chain 28549 chr7 159345973 + 15241189 15241487 AluYk12 309 + 11 309 44040 298 chain 28029 chr7 159345973 + 15254997 15255367 L1PA7 6471 + 6099 6466 44817 214 13 9 71 0 1 72 chain 9104 chr7 159345973 + 15256692 15256844 Tigger3a 397 + 185 327 72338 22 19 13 51 0 1 37 5 0 18 chain 28364 chr7 159345973 + 15319927 15320266 L1PA5 6144 + 5801 6138 44323 106 3 0 82 0 1 148 chain 15329 chr7 159345973 + 15370980 15371173 L1PA16 3655 + 2455 2652 61874 24 0 4 169 chain 8118 chr7 159345973 + 15388237 15388358 MER85 139 + 0 133 74591 45 0 2 35 10 20 31 chain 210974 chr7 159345973 + 15473074 15475698 L1PA7 6471 + 3634 6468 9320 408 16 202 24 0 1 237 1 4 9 0 2 58 0 3 82 6 9 150 0 1 371 0 4 413 1 4 82 0 2 317 0 1 292 2 3 12 0 3 131 3 0 9 chain 489371 chr7 159345973 + 15517372 15523845 L1PA7 6471 + 4 6467 3435 196 0 1 206 2 0 5 5 2 209 0 1 30 0 5 12 0 1 115 27 22 21 248 0 12 0 248 273 4 11 104 1 0 200 4 5 164 9 20 313 0 1 460 40 0 644 1 0 103 1 0 6 0 1 102 0 1 51 4 8 55 1 0 217 2 0 5 4 5 735 1 0 5 1 2 77 2 1 296 1 0 52 0 1 187 0 4 422 0 3 173 0 11 457 66 63 123 0 1 9 4 0 6 chain 16124 chr7 159345973 + 15543949 15544358 L1PB1 5432 + 5044 5422 60867 59 1 2 9 3 0 24 1 0 6 1 0 12 18 12 52 2 1 16 1 0 45 1 0 7 109 93 9 1 0 13 1 0 18 chain 554245 chr7 159345973 + 15547309 15553333 L1PA2 6032 + 6 6031 464 334 1 2 2226 0 1 1944 1 0 1353 1 6 6 5 0 153 chain 25933 chr7 159345973 + 15858293 15858650 THE1A 353 + 0 353 47816 13 2 0 34 0 1 46 1 0 18 0 1 6 7 6 77 2 0 151 chain 52296 chr7 159345973 + 15913766 15914618 L1PB1 5432 + 4605 5424 28790 24 4 0 431 0 4 9 0 4 22 5 0 13 7 6 29 33 26 47 2 1 10 11 10 40 1 0 15 3 0 15 9 0 11 13 10 16 2 0 22 1 0 16 6 5 13 1 0 16 1 0 4 chain 550610 chr7 159345973 + 15940231 15946255 L1PA2 6032 + 2 6028 696 70 1 2 139 0 1 41 2 1 2793 1 0 165 0 3 94 1 0 2717 chain 49135 chr7 159345973 + 15956304 15956901 L1P1 4361 + 3741 4341 29891 125 0 3 241 0 2 32 5 4 149 0 1 7 1 0 23 2 1 12 chain 171552 chr7 159345973 + 15959620 15961770 L1PA8 5853 + 3696 5853 11018 183 3 0 54 0 1 76 2 1 198 0 1 4 1 0 415 4 0 7 0 4 370 2 0 77 1 0 54 0 21 92 0 1 265 0 1 43 2 0 46 2 0 69 20 18 43 2 1 19 1 0 31 6 4 58 chain 28437 chr7 159345973 + 15966306 15966641 L1PA7 6471 + 6115 6449 44212 206 1 0 128 chain 6965 chr7 159345973 + 15997101 15997185 L1PA8 5853 + 5765 5849 77726 84 chain 4302 chr7 159345973 + 16036446 16036529 MER61A 341 + 259 341 89491 18 1 0 7 1 2 14 10 9 32 chain 2643 chr7 159345973 + 16038870 16038899 MER3 215 - 139 168 102761 29 chain 17772 chr7 159345973 + 16080485 16080767 THE1B 368 + 0 302 58930 131 2 1 19 1 2 16 1 0 8 9 10 11 0 3 5 7 25 11 1 0 60 chain 148934 chr7 159345973 + 16101611 16103466 L1PA7 6471 + 4600 6469 12426 71 0 4 57 7 17 723 0 1 149 2 0 96 0 3 415 10 11 160 1 5 5 4 0 142 3 0 10 chain 5208 chr7 159345973 + 16134229 16134305 Tigger2b_Pri 1066 + 826 908 84641 15 4 10 57 chain 75899 chr7 159345973 + 16197721 16198689 LTR5_Hs 974 + 0 974 22613 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 556965 chr7 159345973 + 16216428 16222457 L1PA2 6032 + 1 6032 298 5781 0 2 248 chain 370365 chr7 159345973 + 16248596 16254736 L1PA6 6164 + 3 6153 5646 341 47 20 54 1 0 27 99 65 56 88 12 165 22 1 49 1 18 128 0 1 463 0 8 613 1 0 154 1 2 4 1 0 150 1 0 80 0 1 909 8 333 44 0 2 394 1150 966 58 0 1 1031 chain 167977 chr7 159345973 + 16254875 16256921 L1PA7 6471 + 4393 6466 11216 705 1 0 522 2 1 18 0 1 46 12 14 25 0 9 127 1 20 511 0 1 66 3 0 7 chain 29559 chr7 159345973 + 16327310 16327627 AluYb8 318 + 0 316 42539 132 1 0 184 chain 96915 chr7 159345973 + 16351168 16352402 L1PA8 5853 + 4604 5847 18666 47 1 0 355 2 0 3 6 0 19 1 2 44 0 3 485 1 0 48 2 0 51 1 0 18 2 1 9 2 0 38 0 21 11 2 1 71 0 1 15 chain 27073 chr7 159345973 + 16416142 16416553 L1PA16 3655 + 2334 2777 46164 39 6 0 6 5 12 6 0 2 37 0 34 17 4 0 184 6 5 101 chain 7969 chr7 159345973 + 16470097 16470195 Tigger2a 444 + 282 380 74952 98 chain 49659 chr7 159345973 + 16485987 16486632 L1PA8 5853 + 5110 5762 29697 85 0 12 62 0 1 294 1 0 43 3 1 70 2 1 9 5 4 48 2 1 21 chain 70364 chr7 159345973 + 16507314 16508371 L1MA2 4263 + 3073 4113 23897 108 23 23 66 0 1 73 7 8 214 1 0 18 7 3 74 2 1 131 16 13 149 12 10 9 2 1 4 0 1 72 13 6 47 1 0 8 chain 115888 chr7 159345973 + 16538999 16540554 THE1D-int 1627 + 13 1615 16258 24 1 0 47 3 0 249 9 10 129 0 1 27 1 0 156 4 54 72 1 4 103 7 5 402 1 4 25 22 18 15 0 1 215 4 3 38 chain 24967 chr7 159345973 + 16540566 16540931 THE1D 372 + 0 372 49333 168 43 51 5 1 0 148 chain 11643 chr7 159345973 + 16545034 16545176 L1PA8 5853 + 5713 5853 67492 31 1 0 16 1 0 93 chain 230472 chr7 159345973 + 16572092 16574799 L1PA7 6471 + 3743 6461 8736 87 1 2 177 0 3 219 0 1 463 0 1 253 1 0 404 0 1 265 1 4 236 0 1 276 0 1 324 chain 10928 chr7 159345973 + 16575154 16575291 MER4D1 891 + 756 891 68653 50 1 0 16 1 0 69 chain 29011 chr7 159345973 + 16590548 16591022 LTR44 473 + 0 465 43305 39 40 54 91 37 12 191 0 2 76 chain 9496 chr7 159345973 + 16740002 16740155 MER67C 710 + 531 686 71484 99 4 0 12 15 21 23 chain 27589 chr7 159345973 + 16750348 16750702 THE1A 353 + 0 353 45465 84 0 1 26 1 0 91 1 0 151 chain 46780 chr7 159345973 + 16906963 16907722 L1PB1 5432 + 4685 5417 30736 127 4 3 186 0 1 100 14 12 24 1 0 9 31 25 39 0 1 8 2 1 16 1 0 41 0 4 14 3 0 15 8 0 16 12 9 10 2 0 24 1 0 21 5 3 10 1 0 9 1 0 4 chain 8905 chr7 159345973 + 16943475 16943594 LTR12C 1709 + 949 1068 72776 34 4 4 81 chain 119061 chr7 159345973 + 16947646 16949220 THE1B-int 1605 + 0 1605 15687 25 45 46 359 1 26 165 0 2 121 26 26 204 0 1 265 4 0 223 0 5 94 0 1 42 chain 6501 chr7 159345973 + 17006944 17007045 MER30 238 + 40 164 79341 53 0 3 8 9 29 31 chain 101100 chr7 159345973 + 17018032 17019130 L1PA2 6032 + 4935 6032 18169 244 1 0 853 chain 107676 chr7 159345973 + 17052952 17054201 L1P1 4361 + 4 1272 17367 1087 1 20 161 chain 185093 chr7 159345973 + 17109195 17111599 MER4-int 2692 + 266 2686 10331 263 7 8 72 0 4 123 2 1 39 2 15 204 0 1 190 1 2 52 0 1 9 13 5 140 0 1 7 0 1 47 3 0 129 5 9 140 0 2 163 0 1 124 1 0 325 0 1 336 2 0 5 chain 115882 chr7 159345973 + 17162982 17164340 L1PA4 6152 + 3084 4444 16261 44 5 6 64 6 5 486 3 1 664 0 4 86 chain 483057 chr7 159345973 + 17215217 17220722 L1PA4 6152 + 0 5515 3574 102 1 2 569 10 13 58 1 0 99 0 1 125 0 11 966 1 0 374 2 0 1233 1 0 105 1 0 1857 chain 24382 chr7 159345973 + 17268187 17268522 THE1B 368 + 17 368 50197 27 8 23 102 1 0 22 2 0 167 0 4 6 chain 3862 chr7 159345973 + 17311965 17312007 MER5A 189 + 31 73 92394 42 chain 7067 chr7 159345973 + 17341590 17341859 MER33 330 + 44 322 77375 40 30 26 37 1 7 5 1 0 23 113 121 19 chain 25290 chr7 159345973 + 17404930 17405268 L1PA7 6471 + 6144 6466 48798 171 0 1 26 0 1 22 10 0 47 9 3 44 2 0 7 chain 11358 chr7 159345973 + 17411367 17411516 L1PA8 5853 + 5704 5851 67997 36 2 1 19 1 0 91 chain 267278 chr7 159345973 + 17414505 17418125 HERVH-int 3825 + 22 3825 7781 175 1 0 136 12 11 66 11 10 53 8 277 28 1 0 263 0 10 178 30 0 83 15 8 111 9 0 287 2 1 58 44 29 266 35 39 297 0 1 5 5 4 60 0 1 178 5 6 137 11 0 216 1 0 168 29 6 163 1 0 472 chain 42198 chr7 159345973 + 17426244 17426771 L1PA7 6471 + 5942 6470 33249 344 0 1 27 15 14 124 1 0 4 1 3 11 chain 27593 chr7 159345973 + 17462997 17463351 THE1B 368 + 14 368 45462 29 0 5 124 2 1 19 4 0 176 chain 69077 chr7 159345973 + 17536750 17537713 L1PB1 5432 + 3207 4172 24200 318 3 5 39 7 6 7 0 1 119 1 0 14 14 16 82 5 6 5 2 0 347 chain 113785 chr7 159345973 + 17562954 17564400 L1PA8A 6298 + 4831 6291 16580 172 0 2 60 0 4 127 0 2 153 3 0 88 1 8 42 2 1 37 0 2 41 2 3 43 1 0 290 1 2 204 0 1 52 1 0 126 chain 28692 chr7 159345973 + 17572553 17572861 AluYb8 318 + 0 307 43811 98 1 0 209 chain 91106 chr7 159345973 + 17582323 17583472 L1PA8A 6298 + 5107 6292 19486 61 1 0 55 0 1 42 10 20 180 9 30 159 8 9 444 0 2 81 4 6 95 chain 18980 chr7 159345973 + 17642574 17642940 THE1B 368 + 7 368 57571 16 40 0 10 7 22 19 0 10 23 0 1 64 9 8 18 35 45 125 chain 118228 chr7 159345973 + 17642940 17644495 THE1B-int 1605 + 0 1605 15842 20 6 7 405 0 25 128 0 3 75 13 13 4 1 0 101 10 11 17 1 22 542 4 5 26 1 0 201 chain 16402 chr7 159345973 + 17644498 17644807 THE1B 368 + 3 337 60515 41 9 24 104 2 1 25 13 74 8 50 0 57 chain 26466 chr7 159345973 + 17668464 17668788 L1PA6 6164 + 5835 6162 47030 248 0 3 76 chain 10770 chr7 159345973 + 17695437 17695746 MER47A 366 + 55 366 68919 136 155 157 18 chain 19001 chr7 159345973 + 17727064 17727302 L1PA7 6471 + 6223 6464 57553 66 0 1 30 0 2 142 chain 499905 chr7 159345973 + 17734717 17740630 L1PA5 6144 + 0 5953 3129 129 46 60 677 0 2 71 0 4 226 9 0 825 0 9 498 6 0 696 4 0 456 1 9 1088 0 22 522 1 0 518 0 1 140 chain 297946 chr7 159345973 + 17763537 17767824 L1PB1 5432 + 1452 5419 6889 394 0 4 549 0 1 65 0 10 15 10 4 210 1 0 125 1 4 9 14 3 46 0 3 257 0 12 100 0 1 222 0 4 196 6 9 41 0 1 11 25 27 610 1 0 95 13 18 130 6 3 335 0 12 125 16 14 21 1 0 5 360 26 42 0 1 8 2 1 16 1 0 43 1 0 16 3 0 15 9 0 10 30 25 24 1 0 21 1 0 13 1 0 15 chain 4401 chr7 159345973 + 17769097 17769149 MER1B 344 + 29 81 88881 52 chain 512384 chr7 159345973 + 17806659 17813089 L1PA7 6471 + 0 6433 2649 209 0 1 119 4 1 6 0 3 71 0 2 126 2 0 84 31 13 125 0 2 6 0 9 408 6 16 87 0 1 271 5 9 599 1 0 343 4 5 116 16 0 61 20 11 44 0 3 20 0 2 35 0 7 489 0 1 224 1 0 56 0 2 196 0 3 41 4 2 53 33 0 126 2 0 393 0 5 42 4 1 111 0 1 115 0 4 297 2 3 365 2 1 165 13 11 92 0 2 82 0 2 48 0 1 477 10 38 37 0 1 131 chain 4382 chr7 159345973 + 17873398 17873452 Charlie1b 519 + 436 489 88987 49 1 0 4 chain 3542 chr7 159345973 + 18038581 18038620 MIR 256 + 22 61 94926 39 chain 13864 chr7 159345973 + 18054160 18054348 MER30 238 + 36 238 63774 72 4 21 64 3 0 45 chain 12525 chr7 159345973 + 18061212 18061355 L1PA7 6471 + 6323 6466 65936 143 chain 67995 chr7 159345973 + 18072404 18073140 L1PA2 6032 + 5284 6021 24455 523 0 1 213 chain 9465 chr7 159345973 + 18120145 18120276 MER20 218 + 36 177 71570 27 10 20 94 chain 127696 chr7 159345973 + 18187928 18189452 L1PA8A 6298 + 4759 6290 14328 618 0 3 109 1 4 61 19 20 108 1 0 458 1 2 148 chain 4012 chr7 159345973 + 18588906 18588952 Tigger4a 237 - 190 236 91370 46 chain 33994 chr7 159345973 + 18759213 18759713 MER1A 529 + 0 529 38710 126 25 44 6 3 0 267 23 36 50 chain 15744 chr7 159345973 + 18863316 18863561 MER30 238 + 2 238 61360 53 25 3 39 0 19 11 3 0 69 3 0 42 chain 2815 chr7 159345973 + 18864782 18864847 L1MB3 1562 + 1439 1505 101556 11 6 8 20 7 6 21 chain 93513 chr7 159345973 + 18878511 18879862 L1PA14 3548 + 2126 3450 19111 260 1 0 17 11 12 70 0 2 49 1 0 152 1 0 228 1 0 24 2 0 2 1 0 11 2 0 48 2 0 4 2 0 109 36 29 78 1 0 110 1 0 12 5 1 23 0 1 11 4 2 12 1 0 5 26 24 28 chain 116534 chr7 159345973 + 18920913 18922236 L1PA4 6152 + 4820 6149 16127 283 1 2 174 0 1 18 0 4 485 5 5 357 chain 105296 chr7 159345973 + 19028330 19029500 L1PA3long 6157 + 4986 6157 17646 904 0 1 266 chain 51440 chr7 159345973 + 19032800 19033511 L1PA8 5853 + 5131 5853 29071 137 0 1 81 4 2 13 6 25 171 2 1 48 2 0 68 2 1 10 1 0 51 2 1 19 2 1 92 chain 509634 chr7 159345973 + 19045744 19051882 L1PA6 6164 + 1 6160 2788 387 16 15 623 4 5 9 0 4 121 0 1 1003 4 5 158 0 2 97 5 0 152 0 1 605 0 1 506 2 0 302 1 0 189 0 1 420 12 24 20 0 5 143 1 3 6 2 0 639 0 1 195 8 8 508 chain 31009 chr7 159345973 + 19059957 19060291 L1PA2 6032 + 5697 6031 41114 334 chain 5044 chr7 159345973 + 19069926 19070077 LTR52 417 + 0 150 85447 16 1 0 6 13 0 7 54 67 54 chain 24444 chr7 159345973 + 19187489 19187790 AluSc 308 + 5 308 50105 178 0 1 53 0 1 70 chain 282624 chr7 159345973 + 19196709 19199840 L1PA3long 6157 + 3017 6149 7351 274 0 1 2857 chain 9784 chr7 159345973 + 19217282 19217402 L1PA6 6164 + 3832 3952 70859 120 chain 191524 chr7 159345973 + 19217402 19219606 L1PA6 6164 + 3953 6162 10045 206 0 1 6 0 4 384 0 1 761 1 0 846 chain 507573 chr7 159345973 + 19226602 19232951 L1PA7 6471 + 0 6394 2867 261 6 5 140 1 2 336 0 22 209 1 0 115 6 29 253 0 2 5 11 9 175 1 0 719 0 1 344 8 4 10 3 1 194 5 7 245 8 12 214 2 0 230 0 4 281 1 0 85 8 6 89 2 0 336 0 11 310 0 8 40 3 0 200 0 1 38 1 0 328 1 0 290 7 8 42 1 0 195 1 0 43 2 1 107 24 0 190 4 5 70 0 14 43 2 0 5 4 6 94 chain 141584 chr7 159345973 + 19245302 19246967 LTR12C 1709 + 0 1709 12973 757 0 2 53 0 40 258 2 1 6 2 0 76 3 4 27 0 4 481 chain 56941 chr7 159345973 + 19385445 19386086 L1PA5 6144 + 5502 6144 27288 443 0 1 198 chain 22661 chr7 159345973 + 19432597 19432969 THE1D 372 + 0 372 52882 57 9 0 5 0 1 4 1 0 120 32 34 17 1 7 87 9 10 30 chain 76510 chr7 159345973 + 19460179 19461011 L1PA2 6032 + 5197 6029 22434 832 chain 25495 chr7 159345973 + 19506890 19507173 AluY 311 + 25 309 48487 107 0 1 176 chain 65572 chr7 159345973 + 19517247 19518003 L1PA5 6144 + 5003 5767 25059 288 0 4 72 0 2 38 0 2 358 chain 20317 chr7 159345973 + 19532096 19532369 THE1D-int 1627 + 1341 1612 55994 36 8 0 91 8 9 10 0 5 120 chain 187712 chr7 159345973 + 19635623 19637696 L1PA3long 6157 + 4070 6144 10225 1865 0 1 208 chain 10394 chr7 159345973 + 19641570 19641688 L1PA6 6164 + 3349 3467 69631 118 chain 5159 chr7 159345973 + 19647276 19647353 MADE1 96 + 0 96 84866 40 6 25 31 chain 43170 chr7 159345973 + 19701469 19702029 LTR22 571 + 0 571 32672 82 1 0 165 10 19 16 5 6 211 0 2 70 chain 165609 chr7 159345973 + 19790103 19791927 L1PA3long 6157 + 4334 6157 11362 338 1 0 1485 chain 189296 chr7 159345973 + 19856641 19859160 L1PA11 4918 + 2075 4578 10150 120 0 3 12 9 10 27 3 1 471 1 0 340 0 3 242 0 2 388 1 2 63 0 7 250 1 0 242 0 1 53 0 1 17 1 0 3 4 0 12 8 4 44 2 1 13 2 0 65 2 0 16 1 0 19 5 1 11 37 28 7 1 0 13 2 0 11 chain 4694 chr7 159345973 + 19867331 19867454 MER53 195 - 31 156 87297 46 48 50 29 chain 26548 chr7 159345973 + 19872841 19873194 THE1B 368 + 0 367 46900 44 5 20 103 6 5 195 chain 107316 chr7 159345973 + 19976638 19977932 L1PA7 6471 + 5133 6457 17404 372 0 1 116 0 2 82 1 0 4 7 5 136 0 30 576 chain 144207 chr7 159345973 + 20024767 20026502 L1PA7 6471 + 4733 6469 12754 184 0 1 30 2 1 115 1 2 555 1 0 159 0 1 688 chain 58736 chr7 159345973 + 20050915 20051673 MER4E 760 + 0 747 26755 18 1 3 147 1 0 173 1 0 40 0 4 91 1 0 55 11 0 79 1 0 113 2 0 24 chain 233446 chr7 159345973 + 20054454 20058114 L1PB2 3958 + 474 3823 8652 145 0 1 104 343 0 215 1 5 249 0 1 144 0 5 34 1 0 94 5 8 106 4 1 177 0 1 32 10 4 490 3 2 26 0 6 111 2 4 42 4 0 16 0 4 172 32 1 43 0 1 48 0 4 128 34 33 66 0 1 140 1 0 71 0 1 5 0 4 11 1 6 73 4 46 8 1 0 11 5 0 66 34 49 56 1 0 72 1 0 7 9 10 47 1 0 32 0 1 21 0 1 4 21 8 27 1 0 48 chain 28841 chr7 159345973 + 20054722 20055039 AluYb8 318 + 0 316 43568 132 1 0 184 chain 504406 chr7 159345973 + 20067809 20073939 L1PA3long 6157 + 11 6149 2986 99 30 16 68 3 4 103 11 21 243 8 9 136 0 7 264 0 1 63 0 1 788 1 0 492 1 0 11 0 1 154 0 13 184 15 0 582 0 2 730 0 2 2144 chain 41417 chr7 159345973 + 20092555 20093043 L1PA5 6144 + 5648 6135 33724 338 7 0 9 0 6 134 chain 47113 chr7 159345973 + 20093068 20093663 L1PA10 4194 + 3572 4161 30606 503 3 1 40 3 0 34 1 0 11 chain 82352 chr7 159345973 + 20101150 20102100 L1PA4 6152 + 5200 6152 21167 94 1 0 524 2 1 277 0 4 52 chain 28087 chr7 159345973 + 20120708 20121153 LTR7 482 + 0 470 44737 86 1 51 12 5 0 8 51 0 9 1 0 64 0 31 21 1 2 186 chain 287420 chr7 159345973 + 20121168 20124840 HERVH-int 3825 + 0 3824 7213 26 0 1 289 17 16 32 1 2 107 10 12 47 1 0 9 1 0 1 0 171 12 22 1 30 0 1 22 1 0 123 0 1 268 5 9 95 1 0 156 30 20 4 1 0 15 1 0 102 5 0 434 0 4 76 18 23 13 1 0 179 0 1 356 0 1 503 3 17 89 12 1 139 19 20 396 chain 28752 chr7 159345973 + 20126099 20126550 LTR7 482 + 0 477 43703 86 53 0 15 15 14 17 0 51 47 0 31 52 2 0 164 chain 3886 chr7 159345973 + 20131755 20131803 MER44B 551 + 75 122 92247 42 1 0 5 chain 51514 chr7 159345973 + 20427769 20428760 L1PA15 4387 + 3362 4353 29039 128 10 17 25 0 2 51 0 50 21 0 6 41 16 6 104 14 12 65 2 0 17 1 0 25 1 0 58 75 58 56 1 0 21 50 36 24 1 0 11 6 0 8 0 2 10 2 1 39 17 14 44 3 1 11 13 7 20 chain 13233 chr7 159345973 + 20442408 20442620 LTR1C 686 + 38 268 64729 32 0 1 30 14 12 82 13 28 28 0 4 13 chain 18564 chr7 159345973 + 20490620 20490886 MSTA-int 1630 + 1351 1623 58034 85 1 0 4 0 1 27 12 20 26 1 0 23 1 0 86 chain 62342 chr7 159345973 + 20516158 20516898 L1PA6 6164 + 5404 6154 25789 296 1 0 7 0 4 90 3 0 201 7 9 45 0 8 90 chain 50348 chr7 159345973 + 20522752 20523454 L1PA13 3608 + 2765 3456 29434 367 1 0 28 5 4 110 9 7 55 1 0 17 0 1 37 8 5 47 2 0 5 2 0 8 chain 155747 chr7 159345973 + 20537117 20539149 L1PA3long 6157 + 4442 6157 12019 189 317 0 1526 chain 65458 chr7 159345973 + 20539672 20540525 L1PA10 4194 + 3287 4150 25078 23 5 11 384 1 4 190 0 3 95 14 15 104 3 0 34 chain 190079 chr7 159345973 + 20547121 20549478 HERVH-int 3825 + 10 3825 10108 55 1 1224 143 23 9 29 1 0 215 6 33 282 0 4 88 4 9 202 0 1 555 1 0 211 9 11 39 0 210 270 0 2 223 chain 28964 chr7 159345973 + 20551287 20551693 LTR7 482 + 0 476 43388 69 8 46 85 10 0 11 11 53 212 chain 424341 chr7 159345973 + 20567561 20572468 L1PA5 6144 + 1204 6128 4822 164 1 15 855 0 1 75 0 1 122 5 1 67 1 0 598 3 10 172 1 0 390 2 0 255 1 2 34 0 1 661 1 0 325 0 1 1174 chain 105424 chr7 159345973 + 20605113 20606299 L1PA5 6144 + 4779 5965 17625 1186 chain 49249 chr7 159345973 + 20632480 20633020 L1PA3long 6157 + 5616 6156 29850 540 chain 3086 chr7 159345973 + 20647346 20647383 U2 167 + 0 39 98900 31 0 2 6 chain 12211 chr7 159345973 + 20651751 20651952 MER30 238 + 0 238 66458 15 13 31 61 17 36 95 chain 173523 chr7 159345973 + 20667753 20669742 SVA_E 1901 + 4 1901 10926 149 2 0 105 0 1 65 3 0 493 1 0 19 4 0 91 4 0 21 5 5 22 78 0 286 1 0 204 1 0 296 0 1 139 chain 7005 chr7 159345973 + 20668737 20668815 SVA_E 1901 + 1150 1228 52375 78 chain 39447 chr7 159345973 + 20688427 20688860 L1PA5 6144 + 5442 5875 35047 433 chain 19753 chr7 159345973 + 20688861 20689111 L1PA5 6144 + 5878 6128 56727 94 22 22 134 chain 36070 chr7 159345973 + 20760530 20761105 MER1A 529 + 0 529 37368 80 49 13 26 34 28 278 3 0 26 11 10 68 chain 46095 chr7 159345973 + 20817810 20818410 LTR71B 605 + 0 605 31015 126 11 21 6 6 0 124 0 1 327 chain 9414 chr7 159345973 + 20892277 20892429 MER3 215 + 63 211 71666 12 1 0 76 17 0 16 0 14 30 chain 65455 chr7 159345973 + 20926915 20927716 L1PA7 6471 + 5664 6470 25080 36 0 2 605 3 4 16 0 1 124 5 6 12 chain 220508 chr7 159345973 + 20946182 20949572 L1PB3 3668 + 206 3542 9028 36 3 0 71 19 15 221 1 0 4 0 1 87 0 1 13 14 17 53 5 6 115 0 2 86 1 0 6 5 6 22 3 0 6 13 14 216 2 0 6 27 25 260 4 5 133 14 13 44 10 12 57 10 11 174 0 1 155 14 6 104 9 2 58 1 0 71 1 4 103 0 4 45 0 2 58 14 6 20 1 0 9 0 5 70 1 0 167 2 0 7 35 39 107 2 0 20 4 0 61 1 0 14 0 2 28 26 0 21 11 24 50 5 6 35 8 5 38 1 0 97 6 5 85 20 4 18 1 0 4 1 0 24 3 1 13 chain 4612 chr7 159345973 + 20993091 20993147 L1PA16 3655 + 2823 2879 87738 56 chain 28854 chr7 159345973 + 21043971 21044278 AluYb8 318 + 0 306 43552 132 1 0 174 chain 2947 chr7 159345973 + 21046642 21046673 U2 167 + 0 31 100388 31 chain 3910 chr7 159345973 + 21062376 21062488 L1MD2 1676 + 122 236 92050 16 19 18 33 21 24 23 chain 27568 chr7 159345973 + 21101462 21101829 MSTA-int 1630 + 1248 1612 45491 89 1 0 150 4 1 26 1 0 14 0 2 82 chain 160474 chr7 159345973 + 21146241 21148368 L1P3 4156 + 0 2161 11722 147 4 1 87 23 30 55 1 0 83 9 6 61 1 0 104 10 7 11 6 5 139 13 18 214 7 24 258 0 19 673 1 0 90 1 0 129 chain 17670 chr7 159345973 + 21230363 21230714 L1PB1 5432 + 5105 5420 59043 9 3 0 24 1 0 8 1 0 10 2 0 3 2 0 8 2 0 53 2 1 10 6 4 40 7 6 10 19 6 30 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 3698 chr7 159345973 + 21231864 21231920 L1MA8 2339 + 2124 2177 93617 37 4 1 15 chain 9864 chr7 159345973 + 21286159 21286565 L1MB7 1623 + 1251 1598 70693 12 25 21 4 1 0 4 1 0 11 3 0 20 1 0 13 34 30 56 1 0 7 30 12 10 4 1 27 104 81 38 chain 7676 chr7 159345973 + 21290793 21290880 BC200 147 + 42 129 75690 87 chain 10757 chr7 159345973 + 21345566 21345699 L1P3 4156 + 540 673 68942 133 chain 2556 chr7 159345973 + 21348265 21348292 MER21C 908 + 861 888 103349 27 chain 19967 chr7 159345973 + 21349152 21349482 THE1D 372 + 0 368 56444 15 0 2 34 9 0 23 24 68 38 14 15 173 chain 9741 chr7 159345973 + 21409506 21409608 AluYb8 318 + 212 314 70956 102 chain 6868 chr7 159345973 + 21498219 21498341 MER2 342 + 143 278 78074 15 12 29 61 6 2 28 chain 4283 chr7 159345973 + 21577800 21577858 L1MDa 1598 + 366 424 89609 25 0 1 6 1 0 26 chain 131845 chr7 159345973 + 21582970 21584583 L1PA7 6471 + 4843 6467 13841 135 2 1 5 0 1 126 0 1 38 5 3 152 0 5 311 0 3 21 1 0 4 0 1 48 0 2 118 0 2 5 2 0 473 1 0 4 10 11 143 0 2 9 chain 255833 chr7 159345973 + 21621161 21623975 L1PA3long 6157 + 3333 6157 8095 613 0 1 12 0 3 834 0 2 512 0 4 843 chain 5686 chr7 159345973 + 21678822 21678965 L1MA9 1812 + 1580 1691 82404 36 2 0 45 46 16 14 chain 81044 chr7 159345973 + 21694976 21695957 L1PA8 5853 + 4077 5068 21429 574 4 6 155 0 1 174 9 15 4 0 1 61 chain 40415 chr7 159345973 + 21700572 21701074 L1PA7 6471 + 5923 6435 34373 384 1 2 108 0 9 9 chain 2889 chr7 159345973 + 21858288 21858320 L1ME1 1623 + 1233 1265 100935 32 chain 459065 chr7 159345973 + 21927807 21933812 L1PA7 6471 + 791 6470 4155 58 8 9 54 0 1 50 1 0 23 4 5 111 2 1 13 1 0 20 0 16 6 0 2 24 4 0 311 0 3 261 1 0 9 1 0 373 1 2 470 4 5 14 16 0 257 0 4 224 0 1 154 3 5 120 321 0 106 1 0 41 0 4 18 0 4 206 0 2 55 6 7 597 48 16 121 1 0 4 0 1 90 0 8 99 0 1 847 10 6 15 1 0 4 0 1 6 1 6 288 0 1 233 9 6 122 1 2 156 chain 4689 chr7 159345973 + 21985377 21985432 L1MB2 1706 + 1636 1691 87333 55 chain 123055 chr7 159345973 + 22028498 22030050 LTR12C 1709 + 0 1709 15017 256 11 12 10 5 1 59 0 43 137 1 2 130 0 119 68 1 0 107 1 7 161 9 6 106 11 4 224 12 14 243 chain 32323 chr7 159345973 + 22045399 22045874 MLT2A2 560 + 0 560 40098 180 1 0 16 42 81 30 7 39 54 0 15 145 chain 24673 chr7 159345973 + 22063382 22063746 THE1D 372 + 0 363 49771 77 3 2 83 0 1 17 16 14 12 17 18 139 chain 11005 chr7 159345973 + 22090915 22091152 LTR12C 1709 + 950 1193 68553 118 7 91 9 78 0 25 chain 42746 chr7 159345973 + 22096541 22097170 LTR9B 643 + 0 643 32920 200 11 10 212 50 57 21 7 0 10 0 10 43 0 6 34 2 1 39 chain 25673 chr7 159345973 + 22101276 22101634 L1PA8 5853 + 5502 5853 48212 62 1 0 47 2 0 71 8 6 52 2 1 19 1 0 93 chain 21722 chr7 159345973 + 22242670 22242965 AluSp 311 + 1 300 54202 146 8 27 15 15 0 111 chain 8682 chr7 159345973 + 22247337 22247607 THE1B 368 + 18 293 73259 40 83 82 29 1 0 11 42 50 12 2 1 50 chain 3889 chr7 159345973 + 22286109 22286151 tRNA-Arg-CGY_ 50 + 4 46 92225 42 chain 9559 chr7 159345973 + 22339245 22339360 MER50 708 + 575 690 71351 115 chain 3523 chr7 159345973 + 22395105 22395180 LOR1a 498 + 400 484 95080 27 3 11 15 11 12 19 chain 91803 chr7 159345973 + 22463085 22464091 L1PA3long 6157 + 4275 5281 19369 1006 chain 17987 chr7 159345973 + 22467468 22467830 THE1B 368 + 0 368 58671 109 129 134 67 0 1 57 chain 4106 chr7 159345973 + 22468014 22468246 MER53 195 + 40 186 90730 1 97 0 23 52 54 13 1 10 45 chain 546694 chr7 159345973 + 22528298 22534328 L1PA3long 6157 + 0 6157 928 152 0 1 97 5 6 520 0 128 5248 3 0 5 chain 9177 chr7 159345973 + 22543802 22544031 L1PB1 5432 + 5168 5422 72170 19 0 1 13 6 35 17 7 8 21 1 0 11 27 16 16 12 22 23 1 0 23 1 0 11 1 0 14 1 0 4 chain 25371 chr7 159345973 + 22703357 22703765 LTR7 482 + 0 482 48663 54 44 32 15 16 66 57 8 40 43 0 2 80 0 2 91 chain 294488 chr7 159345973 + 22703809 22707656 HERVH-int 3825 + 21 3824 6997 259 0 2 51 1 0 27 8 10 100 0 60 40 1 0 10 1 0 24 2 52 24 22 1 17 33 32 49 1 0 308 0 1 293 0 1 41 0 1 46 1 0 215 4 31 370 8 13 875 185 20 21 1 0 443 0 1 250 1 0 115 chain 26578 chr7 159345973 + 22708903 22709313 LTR7 482 + 0 482 46861 69 29 17 15 16 66 57 8 40 43 0 2 173 chain 272890 chr7 159345973 + 22737488 22741316 L1MA1 4479 + 256 4136 7633 21 3 1 71 17 5 64 0 2 210 0 99 30 0 6 22 4 0 28 0 2 309 0 4 109 9 17 62 0 1 284 0 3 67 8 7 166 0 9 174 12 17 41 0 7 24 8 9 40 1 3 4 0 1 4 0 1 329 1 2 5 1 0 135 0 1 14 12 0 105 2 0 27 17 16 49 1 0 94 8 7 21 2 0 94 20 5 73 5 0 18 4 0 76 1 0 12 6 0 48 5 0 78 3 0 119 5 0 5 1 0 200 2 1 25 2 0 16 1 0 7 1 0 64 2 1 19 2 0 6 3 1 6 1 0 68 1 0 6 0 1 13 1 0 5 2 0 126 1 0 29 2 0 29 chain 19459 chr7 159345973 + 22768625 22768977 THE1D 372 + 0 360 57083 55 3 8 47 22 22 36 54 57 115 1 0 11 0 1 8 chain 2847 chr7 159345973 + 22787175 22787205 MER45A 178 + 71 101 101263 30 chain 6709 chr7 159345973 + 22788488 22788624 MLT1B 390 + 35 173 78612 59 44 46 33 chain 144027 chr7 159345973 + 22800209 22801862 SVA_D 2077 + 8 2077 12769 17 5 0 28 6 0 489 0 80 268 0 269 28 0 1 26 17 95 73 0 8 11 8 0 39 1 0 637 chain 13827 chr7 159345973 + 22803669 22804040 MER61-int 3695 + 1 326 63836 13 0 1 13 14 2 14 2 1 5 1 0 16 3 4 126 133 99 31 chain 33139 chr7 159345973 + 22827595 22828031 MER66A 478 + 0 436 39412 66 1 0 122 0 1 9 1 0 21 4 5 212 chain 15945 chr7 159345973 + 22916582 22916763 HERVH-int 3825 + 3644 3825 61099 181 chain 553145 chr7 159345973 + 22924196 22930352 L1PA4 6152 + 0 6152 539 2806 1 2 369 2 0 1452 4 0 611 1 0 303 0 1 588 1 0 12 0 2 6 chain 5551 chr7 159345973 + 22965497 22965564 L1PA8 5853 + 5786 5853 83027 67 chain 556474 chr7 159345973 + 23035734 23042732 L1PA2 6032 + 7 6030 336 4115 974 0 1134 1 0 774 chain 76283 chr7 159345973 + 23039855 23040823 LTR5_Hs 974 + 0 974 22490 289 0 1 177 0 1 188 1 0 163 8 15 16 23 21 103 chain 34623 chr7 159345973 + 23042732 23043115 L1PA5 6144 + 5761 6144 38269 383 chain 60100 chr7 159345973 + 23057537 23058294 MER4E 760 + 0 760 26343 17 0 1 148 7 0 203 0 2 59 0 5 11 2 1 154 2 3 134 0 2 20 chain 4925 chr7 159345973 + 23142255 23142313 MLT1D 503 + 445 503 86021 58 chain 17281 chr7 159345973 + 23204615 23204967 THE1C 375 + 0 375 59480 30 1 0 17 0 6 17 21 22 13 30 34 28 0 4 8 0 2 5 24 22 51 1 0 76 4 14 26 chain 37440 chr7 159345973 + 23261330 23261790 L1PA6 6164 + 5704 6162 36448 311 2 5 6 3 0 127 2 0 9 chain 25294 chr7 159345973 + 23281618 23282452 Tigger3b 1229 + 54 695 48795 46 0 173 21 1 0 5 1 0 9 7 0 6 21 1 13 4 0 217 340 2 17 0 9 7 10 5 26 61 62 22 chain 4831 chr7 159345973 + 23291487 23291574 MER30 238 + 125 210 86534 13 2 0 15 18 18 39 chain 3353 chr7 159345973 + 23304648 23304685 L1MB3 1562 + 1380 1417 96565 37 chain 541990 chr7 159345973 + 23321060 23327074 L1PA3long 6157 + 0 6156 1208 153 1 2 621 0 128 166 1 0 83 9 12 1085 0 2 2559 5 0 235 0 12 1091 0 2 5 chain 15489 chr7 159345973 + 23405533 23406136 MER1B 344 + 52 338 61670 18 10 0 11 9 20 31 9 6 82 4 0 29 1 0 12 1 0 5 331 22 50 chain 21482 chr7 159345973 + 23437209 23437478 AluSq10 312 + 10 278 54537 101 2 1 166 chain 5813 chr7 159345973 + 23540442 23540508 MER21A 919 + 443 509 81864 66 chain 3434 chr7 159345973 + 23590337 23590374 MER2B 336 + 293 330 95783 37 chain 12219 chr7 159345973 + 23608371 23608594 MER30 238 + 0 237 66441 15 20 27 56 0 2 8 4 12 5 2 0 5 2 0 50 8 9 48 chain 173127 chr7 159345973 + 23635910 23638733 SVA_E 1901 + 0 1901 10947 104 0 20 29 2 0 618 40 0 46 1 0 19 3 0 91 535 0 107 359 0 861 2 0 6 chain 10393 chr7 159345973 + 23636867 23636994 SVA_E 1901 + 927 1102 46141 21 0 49 98 1 0 7 chain 24081 chr7 159345973 + 23636994 23637398 SVA_E 1901 + 927 1229 35284 83 1 0 85 1 0 60 100 0 74 chain 2323 chr7 159345973 + 23637224 23637251 SVA_E 1901 + 931 958 99733 27 chain 5160 chr7 159345973 + 23637253 23637324 SVA_E 1901 + 959 1029 50387 18 1 0 52 chain 5010 chr7 159345973 + 23637509 23637563 SVA_E 1901 + 817 871 70748 54 chain 5186 chr7 159345973 + 23637563 23637650 SVA_E 1901 + 1296 1382 35284 69 4 3 14 chain 6519 chr7 159345973 + 23637705 23637771 SVA_E 1901 + 1008 1074 79273 66 chain 2517 chr7 159345973 + 23637836 23637864 SVA_E 1901 + 1132 1160 61482 28 chain 38061 chr7 159345973 + 23653707 23654222 LTR10G 522 + 0 522 36024 18 0 2 323 7 6 10 18 23 66 1 3 61 1 0 10 chain 40234 chr7 159345973 + 23658803 23659323 LTR10G 522 + 2 522 34490 341 7 6 99 1 3 57 1 0 14 chain 14410 chr7 159345973 + 23662293 23662566 MER1B 344 + 63 339 63017 18 11 12 63 15 22 38 4 0 48 10 12 28 11 7 19 0 1 8 chain 6892 chr7 159345973 + 23752022 23752120 L1MB3 1562 + 1458 1555 77977 67 3 2 28 chain 53240 chr7 159345973 + 23758788 23759466 L1PA8A 6298 + 2321 3012 28489 112 11 13 6 2 0 53 1 2 69 0 4 69 0 4 105 0 4 250 chain 18946 chr7 159345973 + 23785783 23786001 L1PA6 6164 + 5944 6162 57602 218 chain 325344 chr7 159345973 + 23796748 23800754 L1PA7 6471 + 2442 6467 6300 199 1 0 128 1 0 325 6 10 468 0 12 647 1 0 26 0 1 127 0 1 95 0 4 187 0 4 153 1 0 154 0 3 151 14 0 11 0 10 169 0 6 161 10 11 106 0 3 89 0 1 144 0 1 152 0 2 123 6 5 116 18 2 208 0 1 9 chain 116847 chr7 159345973 + 23832912 23834543 THE1B-int 1605 + 0 1605 16077 14 1 3 284 0 5 38 2 1 81 47 35 361 31 23 24 0 1 272 11 15 10 17 10 80 0 8 66 22 4 270 chain 504575 chr7 159345973 + 23844558 23850977 L1PA6 6164 + 4 6162 2985 135 29 30 68 0 2 143 1 0 135 0 2 48 1 0 120 0 1 164 0 2 75 4 8 874 6 0 515 7 0 30 0 2 42 0 4 136 5 8 31 0 4 215 0 4 44 303 0 418 0 6 46 0 1 1309 0 2 50 6 8 324 0 10 240 1 2 55 0 6 79 0 4 623 4 0 133 chain 25904 chr7 159345973 + 23869868 23870163 L1PA8 5853 + 3682 3980 47861 143 0 3 152 chain 3444 chr7 159345973 + 23875106 23875197 LTR33 499 + 409 499 95699 14 4 5 16 26 24 31 chain 23456 chr7 159345973 + 23912383 23912726 THE1C 375 + 0 375 51662 125 3 0 13 1 5 20 23 54 158 chain 110069 chr7 159345973 + 23912726 23914170 THE1C-int 1605 + 0 1605 17072 14 2 1 95 0 54 156 0 1 6 0 6 112 0 7 48 9 105 147 6 0 226 0 1 222 4 1 315 0 5 35 0 1 47 chain 556389 chr7 159345973 + 23947171 23953317 L1PA3long 6157 + 5 6157 340 705 1 0 1609 1 0 61 1 3 1015 0 1 1905 0 4 699 0 1 149 chain 38142 chr7 159345973 + 23983262 23983715 L1PA7 6471 + 5836 6321 35957 439 1 33 13 chain 12014 chr7 159345973 + 23983724 23983863 L1PA7 6471 + 6328 6467 66821 139 chain 233348 chr7 159345973 + 23987816 23991236 L1PB3 3668 + 223 3620 8654 45 0 2 370 1 0 222 0 5 6 4 0 6 0 2 14 0 1 37 5 9 26 1 8 235 2 1 9 5 0 50 0 3 54 0 1 64 10 0 191 2 3 238 0 5 170 0 20 96 36 6 52 1 0 60 0 5 125 1 2 161 6 0 141 1 0 30 14 16 50 2 0 5 0 1 49 1 0 79 17 6 71 0 16 10 14 11 17 0 1 27 16 20 71 0 1 50 6 5 19 9 8 60 1 0 18 0 4 74 5 4 87 20 4 19 5 3 23 4 2 35 9 5 9 2 1 16 7 4 13 1 0 8 chain 68131 chr7 159345973 + 23996763 23997502 L1PA2 6032 + 5284 6022 24422 492 1 0 246 chain 116537 chr7 159345973 + 24060198 24062122 L1PA10 4194 + 250 4161 16126 21 2 0 15 1 0 8 37 12 8 1 0 21 2 0 28 9 8 9 1 0 15 7 0 8 1 0 79 4 2 308 4 27 30 5 0 514 317 2333 420 3 0 34 2 1 10 chain 24765 chr7 159345973 + 24065953 24066321 L1PB4 2604 + 2188 2552 49639 198 3 1 23 0 3 61 32 27 51 chain 19607 chr7 159345973 + 24074609 24074850 AluY 311 + 40 307 56900 92 0 1 17 0 24 107 0 1 25 chain 12658 chr7 159345973 + 24083366 24083604 L1PB1 5432 + 4919 5103 65705 51 59 5 71 0 1 5 1 0 51 chain 38186 chr7 159345973 + 24317068 24317536 MER4A1 472 + 0 472 35921 399 1 5 68 chain 78089 chr7 159345973 + 24354821 24355773 L1P2 5180 + 2203 3164 22075 64 0 1 59 1 0 210 3 4 153 0 3 440 0 5 22 chain 4430 chr7 159345973 + 24370670 24370719 MLT2B1 522 + 473 522 88736 49 chain 10206 chr7 159345973 + 24386030 24386145 MER85 139 + 4 119 70003 115 chain 9195 chr7 159345973 + 24393865 24394086 L1MC1 2226 + 1888 2092 72129 27 1 0 63 24 19 28 5 6 12 33 26 14 5 0 9 chain 40182 chr7 159345973 + 24396244 24396697 LTR7 482 + 0 482 34530 54 2 0 212 0 31 185 chain 299073 chr7 159345973 + 24396699 24400310 HERVH-int 3825 + 0 3825 6860 376 0 1 155 5 0 38 2 1 9 1 0 24 1 14 13 3 0 14 45 7 4 1 0 46 9 28 49 2 1 443 15 0 460 6 33 299 0 10 678 5 0 19 4 0 370 0 3 24 0 210 263 3 8 225 chain 37388 chr7 159345973 + 24401545 24401985 LTR7 482 + 0 482 36484 230 0 31 54 0 1 45 3 0 12 0 13 96 chain 18146 chr7 159345973 + 24410622 24410995 L1PB1 5432 + 5081 5421 58512 22 5 4 7 1 0 22 1 0 11 1 0 11 5 1 8 2 0 53 2 1 15 1 0 45 40 27 19 2 0 5 17 14 24 1 0 21 1 0 13 1 0 17 chain 4998 chr7 159345973 + 24423418 24423495 Ricksha_c 1012 + 94 167 85677 48 4 3 6 3 0 16 chain 27085 chr7 159345973 + 24508864 24509159 AluYb8 318 + 12 305 46147 111 3 1 181 chain 8737 chr7 159345973 + 24537331 24537438 U6 107 + 0 107 73127 107 chain 121352 chr7 159345973 + 24537438 24538842 L1PA6 6164 + 4773 6161 15287 61 1 0 226 0 1 953 11 0 9 5 0 138 chain 29326 chr7 159345973 + 24545711 24546017 AluYb8 318 + 1 307 42838 306 chain 15385 chr7 159345973 + 24602736 24603058 THE1C 375 + 0 340 61804 15 3 1 31 1 2 55 11 18 51 65 76 24 5 6 61 chain 325626 chr7 159345973 + 24626469 24630500 L1PA7 6471 + 2391 6469 6289 5 0 2 54 0 3 20 0 1 166 0 3 61 0 4 115 0 2 231 0 4 93 0 4 342 4 0 219 3 0 14 1 0 67 0 2 9 0 1 195 0 1 146 16 17 139 0 3 142 0 12 69 0 8 261 0 4 436 0 4 46 1 0 172 0 5 129 0 2 10 0 3 333 0 1 282 6 8 8 4 0 12 1 0 52 11 10 6 3 0 106 0 1 25 8 0 8 chain 26763 chr7 159345973 + 24835315 24835785 L1PA15 4387 + 3913 4366 46596 19 1 0 83 0 2 56 0 1 30 2 1 25 13 12 39 5 4 22 4 0 6 5 4 50 6 3 43 4 2 12 14 9 20 1 0 10 chain 11088 chr7 159345973 + 24844301 24844493 MER30 238 + 36 237 68433 72 4 0 12 3 19 14 6 0 8 0 6 17 9 6 47 chain 11747 chr7 159345973 + 24939852 24939997 L1PA8 5853 + 5705 5848 67314 39 1 0 16 1 0 88 chain 135133 chr7 159345973 + 25017998 25020235 SVA_F 1814 + 335 1814 13531 41 9 0 504 1 0 56 0 1 10 1 15 95 762 0 130 1 0 627 chain 5383 chr7 159345973 + 25018715 25018774 SVA_F 1814 + 1233 1291 62804 41 1 0 17 chain 2913 chr7 159345973 + 25018798 25018873 SVA_F 1814 + 1139 1214 65341 75 chain 2949 chr7 159345973 + 25018890 25018976 SVA_F 1814 + 375 462 67357 13 1 0 44 3 5 25 chain 25836 chr7 159345973 + 25019007 25019339 SVA_F 1814 + 994 1274 47962 219 52 0 61 chain 2391 chr7 159345973 + 25019252 25019278 SVA_F 1814 + 1011 1037 60547 26 chain 8370 chr7 159345973 + 25019339 25019430 SVA_F 1814 + 1098 1187 60547 78 2 0 11 chain 8191 chr7 159345973 + 25051882 25052089 L1PB1 5432 + 5236 5422 74430 42 6 5 13 1 0 4 20 9 17 32 27 17 1 0 22 1 0 12 1 0 18 chain 35318 chr7 159345973 + 25063095 25063578 MER1A 529 + 41 529 37819 49 4 0 192 11 18 37 0 1 120 6 7 64 chain 26541 chr7 159345973 + 25108198 25108496 AluYk4 311 + 0 297 46907 264 1 0 33 chain 116887 chr7 159345973 + 25110040 25111888 THE1B-int 1605 + 0 1605 16073 11 0 4 98 0 3 65 4 0 64 13 14 173 7 32 22 0 1 225 2 0 7 10 12 62 1 7 76 298 0 47 6 17 85 0 1 10 0 1 105 8 12 433 0 1 11 0 1 5 chain 2942 chr7 159345973 + 25188981 25189014 LTR54 533 + 26 59 100487 33 chain 33933 chr7 159345973 + 25195048 25195506 MER4A1 472 + 0 458 38763 225 0 21 16 22 1 195 chain 9133 chr7 159345973 + 25264656 25264861 U3 216 + 1 195 72274 56 81 70 68 chain 27582 chr7 159345973 + 25287223 25287579 MER57B1 401 + 0 364 45477 271 3 0 61 0 11 21 chain 248115 chr7 159345973 + 25448850 25451588 L1PA4 6152 + 3413 6151 8286 2738 chain 18120 chr7 159345973 + 25484048 25484254 L1PA7 6471 + 6245 6451 58545 206 chain 7406 chr7 159345973 + 25488548 25488656 MLT1B 390 + 262 371 76376 45 5 6 58 chain 2984 chr7 159345973 + 25558799 25558838 L1MB7 1623 + 1453 1491 100014 25 1 0 13 chain 3747 chr7 159345973 + 25570676 25570756 MADE1 96 - 0 96 93268 21 23 39 36 chain 557369 chr7 159345973 + 25603033 25609049 L1PA2 6032 + 13 6030 278 4972 0 1 1044 chain 6431 chr7 159345973 + 25635561 25635708 L1PB3 3668 + 3482 3614 79565 18 1 0 3 4 0 25 6 4 34 7 3 13 1 0 13 7 4 15 chain 139878 chr7 159345973 + 25702197 25703790 L1PA5 6144 + 4535 6128 13107 123 1 0 129 0 5 79 0 1 815 0 2 202 1 0 99 6 0 138 chain 553321 chr7 159345973 + 25743832 25749863 L1PA2 6032 + 0 6032 532 74 0 1 180 2 1 108 0 1 55 0 1 10 1 0 2503 0 1 2402 1 0 695 chain 4728 chr7 159345973 + 25780837 25780908 MLT1C 463 + 53 137 87088 37 4 16 19 0 1 11 chain 11758 chr7 159345973 + 25825398 25825701 L1MB8 1703 + 1437 1675 67293 15 13 21 115 88 27 12 3 0 3 6 0 32 3 0 13 chain 26972 chr7 159345973 + 25826204 25826562 L1MA3 4352 + 2104 2459 46307 33 2 1 139 2 0 33 4 3 13 0 1 132 chain 75130 chr7 159345973 + 25925119 25925979 L1P1 4361 + 3246 4108 22808 730 9 12 5 1 0 115 chain 6029 chr7 159345973 + 25955571 25955639 MER41B 635 + 479 547 80970 68 chain 4641 chr7 159345973 + 25987691 25987743 MADE1 96 + 44 96 87586 52 chain 16139 chr7 159345973 + 26080481 26080699 MER39B 650 + 0 255 60831 137 1 37 6 0 2 50 1 0 23 chain 22261 chr7 159345973 + 26089511 26089845 THE1A 353 + 0 334 53458 109 2 1 64 0 1 27 1 0 10 33 34 88 chain 80596 chr7 159345973 + 26108581 26110303 HSMAR2 1300 + 10 1267 21511 54 21 42 31 0 1 154 1 0 33 176 21 47 0 4 7 31 24 61 20 19 94 0 1 122 6 9 314 1 0 5 334 24 42 21 4 122 7 5 7 1 0 10 chain 7458 chr7 159345973 + 26122717 26122857 L1MB3 1562 + 1235 1413 76225 25 20 47 41 8 19 46 chain 194948 chr7 159345973 + 26122900 26125284 HERVL-int 5654 + 3266 5654 9892 73 5 6 24 2 1 457 1 0 105 0 2 10 6 7 89 12 14 867 1 0 58 0 3 6 0 2 235 8 1 181 0 13 9 1 0 4 9 0 221 chain 31965 chr7 159345973 + 26125284 26125681 MLT2A1 477 + 0 397 40365 40 1 0 46 0 1 83 4 1 208 0 3 15 chain 135220 chr7 159345973 + 26147461 26149064 SVA_D 2077 + 0 2066 13519 594 0 42 56 0 35 38 0 40 73 0 83 41 0 52 32 0 1 15 0 206 32 0 1 10 0 1 35 0 1 5 6 7 44 5 9 27 7 5 574 2 0 7 chain 36378 chr7 159345973 + 26227287 26227793 MLT2A1 477 + 2 477 37153 144 0 1 24 3 0 33 0 1 16 0 1 176 6 0 21 22 1 9 4 0 8 7 3 27 0 4 6 chain 153207 chr7 159345973 + 26244417 26247054 HERVH48-int 3304 + 188 3242 12164 12 7 5 21 1 0 31 69 40 65 6 2 5 1 0 72 1 0 17 24 12 78 2 1 10 3 1 66 15 0 108 2 0 42 1 0 17 0 588 45 0 1 143 1 0 89 1 0 139 0 9 125 2 0 7 0 1 253 1 0 19 5 3 67 2 1 10 2 1 47 1 0 229 1 0 4 2 11 7 1 0 44 4 2 13 4 1 30 2 0 16 156 117 27 3 0 8 10 8 23 13 5 9 1 0 23 3 0 5 1 0 45 1 0 4 3 1 65 2 0 11 47 33 70 3 1 13 76 53 23 chain 25380 chr7 159345973 + 26250263 26250593 MER48 407 + 43 405 48652 93 1 21 102 11 23 123 chain 157554 chr7 159345973 + 26261277 26263034 SVA_D 2077 + 45 2077 11909 8 0 2 781 1 2 42 0 269 239 0 1 40 0 1 23 1 2 622 chain 24380 chr7 159345973 + 26271474 26271785 LTR7B 505 + 0 384 50201 105 0 10 60 0 38 12 0 25 4 1 0 24 0 2 85 1 0 19 chain 5586 chr7 159345973 + 26277477 26277543 MER57A1 433 + 177 243 82872 66 chain 5575 chr7 159345973 + 26280427 26280500 LTR45B 484 + 349 421 82910 55 1 0 17 chain 10574 chr7 159345973 + 26283417 26283551 MER34 540 + 366 502 69277 14 0 2 120 chain 69156 chr7 159345973 + 26564056 26564940 L1PA8A 6298 + 5413 6290 24185 79 0 8 56 12 14 148 21 4 568 chain 8501 chr7 159345973 + 26633857 26634017 L1PB1 5432 + 5281 5422 73677 15 14 1 30 2 0 4 1 0 15 1 0 45 2 1 10 1 0 20 chain 6930 chr7 159345973 + 26741149 26741232 L1MA3 4352 + 4119 4202 77847 83 chain 261906 chr7 159345973 + 26798174 26803243 L1MA1 4479 + 229 4131 7913 49 2 0 84 0 3 51 101 22 234 0 9 60 55 50 24 0 2 153 1 0 14 0 3 5 149 2 155 1 0 24 1 3 12 0 1 5 1 0 64 0 5 422 321 12 262 6 22 60 3 1 4 1 0 36 3 2 20 1 5 62 0 4 75 13 11 80 0 1 137 0 3 24 6 5 53 0 2 13 32 18 9 0 1 24 1 0 34 4 3 103 2 0 33 1 0 61 2 0 93 1 0 27 2 0 84 0 1 89 2 0 15 5 1 76 1 0 12 5 0 53 2 1 37 7 8 7 1 0 19 3 0 115 6 0 6 0 4 87 9 10 83 715 95 38 1 0 20 2 0 13 1 0 87 1 0 6 8 5 114 8 7 27 2 0 26 chain 166588 chr7 159345973 + 26817639 26819581 L1PA7 6471 + 4508 6470 11299 74 0 3 746 0 6 68 0 2 62 0 5 147 0 3 506 0 1 68 0 4 117 0 1 15 4 0 121 2 1 12 chain 17048 chr7 159345973 + 26823458 26823687 Tigger1 2417 + 648 879 59757 130 12 14 87 chain 333236 chr7 159345973 + 26833413 26837339 L1PA7 6471 + 2497 6464 6163 137 1 2 214 7 27 12 0 4 203 0 4 218 0 1 165 3 2 837 1 0 161 0 1 34 0 2 155 0 4 187 1 0 147 1 0 588 0 5 14 1 0 72 0 1 54 0 1 316 0 2 397 chain 41930 chr7 159345973 + 26866693 26867235 Tigger1 2417 + 927 1477 33411 40 0 1 23 5 6 383 0 3 77 0 3 14 chain 116378 chr7 159345973 + 26903906 26905189 L1PA3long 6157 + 4841 6157 16160 466 0 5 127 0 28 690 chain 418011 chr7 159345973 + 26931576 26936264 L1PA4 6152 + 1461 6152 4910 387 0 1 352 0 2 499 0 1 468 1 0 345 1 0 424 0 1 225 0 2 1024 13 6 103 1 0 598 0 1 241 0 5 6 chain 22162 chr7 159345973 + 26996591 26997073 MLT2A2 560 + 0 560 53623 97 45 0 19 17 19 34 11 9 15 55 56 53 3 112 26 0 4 14 0 5 37 1 0 5 1 4 5 2 0 36 0 4 6 chain 440965 chr7 159345973 + 26997073 27008864 HERVL-int 5654 + 0 5645 4555 323 0 2 140 1 4 130 0 5 247 23 39 364 10 8 22 51 51 183 6 16 739 8 9 55 0 1 391 8 0 72 5 4 36 0 1 372 4 5 58 0 4 811 0 1 270 2 0 558 1 0 4 9 10 237 3 0 7 1 0 80 7 5 134 6179 7 240 chain 252121 chr7 159345973 + 27014358 27018703 L1MA1 4479 + 264 3888 8177 16 2 0 73 4 0 64 0 1 194 2 11 77 777 73 25 4 0 38 1 0 124 4 9 83 1 2 57 1 5 37 25 5 328 0 1 27 12 13 151 0 2 141 9 11 252 2 0 82 0 6 49 1 0 381 1 0 4 4 16 46 1 0 57 0 1 45 2 0 27 6 5 63 1 0 62 1 5 25 1 0 25 5 3 160 3 0 11 2 0 17 5 1 76 1 0 12 5 0 11 5 12 19 14 10 42 0 3 29 3 0 285 0 1 36 48 44 71 1 0 20 2 0 13 1 0 9 3 0 6 1 0 14 chain 164843 chr7 159345973 + 27044122 27046135 SVA_D 2077 + 76 2061 11422 728 0 1 111 7 144 188 50 0 140 124 0 13 4 0 21 0 1 202 0 1 103 0 10 322 chain 10761 chr7 159345973 + 27045347 27045470 SVA_D 2077 + 1036 1159 39736 7 0 1 49 1 0 66 chain 2779 chr7 159345973 + 27077422 27077455 Tigger3c 601 + 0 34 101778 18 0 1 15 chain 68572 chr7 159345973 + 27276090 27276871 LTR17 781 + 0 781 24318 327 1 0 446 0 1 7 chain 28185 chr7 159345973 + 27283040 27283334 AluYk12 309 + 11 305 44591 294 chain 12992 chr7 159345973 + 27286416 27286595 MER30 238 + 40 238 65125 49 0 1 17 4 0 7 1 23 101 chain 25242 chr7 159345973 + 27474729 27474997 AluYa5 310 + 37 305 48884 268 chain 74338 chr7 159345973 + 27479417 27480400 L1PA8 5853 + 4870 5853 22995 128 18 21 73 7 8 155 0 1 308 1 0 44 2 0 74 1 0 5 2 1 21 0 2 29 2 1 19 1 0 93 chain 33095 chr7 159345973 + 27674273 27674653 L1PA6 6164 + 5782 6162 39441 380 chain 3066 chr7 159345973 + 27706555 27706591 MLT2D 439 + 403 439 99132 36 chain 4031 chr7 159345973 + 27737887 27737973 MER46C 351 + 214 319 91237 15 25 44 46 chain 4566 chr7 159345973 + 27775565 27775667 MLT2F 649 + 88 226 87990 12 2 0 14 0 1 29 28 65 17 chain 264680 chr7 159345973 + 27855171 27859877 L1PA7 6471 + 3255 6469 7837 19 8 6 175 0 5 37 1 0 43 0 1 9 0 4 16 0 4 566 1529 0 275 4 0 261 5 21 430 0 1 156 0 1 199 0 1 114 0 4 18 1 0 38 0 2 419 0 5 354 1 2 28 chain 13246 chr7 159345973 + 27945906 27946151 MER47A 366 + 35 287 64716 62 0 2 48 53 62 54 4 0 24 chain 384338 chr7 159345973 + 27981999 27986629 L1P2 5180 + 2 4661 5407 141 0 11 93 1 0 33 22 21 196 11 10 8 1 0 222 0 10 40 11 9 137 0 25 501 5 4 854 4 2 4 1 0 154 0 1 582 0 1 115 0 1 12 1 0 796 13 4 672 chain 134523 chr7 159345973 + 27986648 27988204 SVA_B 1603 + 0 1603 13592 9 0 2 11 0 5 9 1 8 735 0 40 138 9 5 14 1 0 14 1 0 18 4 0 149 0 3 443 chain 133245 chr7 159345973 + 27988941 27990442 L1PA5 6144 + 4635 6142 13722 486 0 7 166 1 0 848 chain 27697 chr7 159345973 + 28014366 28014717 THE1B 368 + 0 363 45322 44 0 15 109 1 0 32 2 0 163 chain 4022 chr7 159345973 + 28048683 28048945 L1MB7 1623 + 1364 1581 91294 10 2 1 44 185 141 21 chain 5520 chr7 159345973 + 28220674 28220742 MER5A 189 + 0 69 83153 21 0 1 47 chain 21363 chr7 159345973 + 28263926 28264281 MER51B 395 + 16 395 54689 18 13 32 34 10 16 84 35 35 10 1 0 150 chain 19887 chr7 159345973 + 28283906 28284153 L1PA7 6471 + 5311 5549 56550 29 9 0 209 chain 8945 chr7 159345973 + 28290340 28290473 MER20 218 + 36 159 72678 42 13 4 6 1 0 71 chain 32743 chr7 159345973 + 28354161 28354606 MLT2A1 477 + 1 477 39724 99 0 1 70 7 4 73 0 1 136 21 53 39 chain 15855 chr7 159345973 + 28377204 28377428 MER33 330 + 6 253 61221 34 2 0 89 1 26 98 chain 4754 chr7 159345973 + 28392423 28392500 MADE1 96 + 0 93 86935 32 2 18 4 0 1 4 1 0 34 chain 12382 chr7 159345973 + 28399326 28399632 L1P4 1494 + 821 1134 66172 72 0 15 11 135 127 88 chain 52608 chr7 159345973 + 28402317 28402912 L1PA5 6144 + 4628 5221 28699 102 2 0 491 chain 35488 chr7 159345973 + 28447933 28448365 MLT2A1 477 + 0 477 37734 142 0 1 26 0 4 207 8 48 49 chain 60030 chr7 159345973 + 28590011 28590672 L1PA5 6144 + 5467 6128 26366 661 chain 24531 chr7 159345973 + 28598047 28598381 THE1A 353 + 0 341 49976 106 5 4 92 1 0 32 8 7 7 0 10 83 chain 42525 chr7 159345973 + 28825960 28826498 MER41A 554 + 0 547 33049 122 6 9 338 7 12 18 7 8 40 chain 120186 chr7 159345973 + 28838225 28839531 SVA_D 2077 + 68 2068 15507 509 0 40 70 0 40 63 0 614 664 chain 9464 chr7 159345973 + 28951507 28951791 L1PREC2 3366 + 2756 3006 71575 50 1 0 5 12 15 24 77 60 11 3 1 30 3 0 11 24 10 33 chain 4271 chr7 159345973 + 29006179 29006246 MER63A 208 + 86 154 89697 19 7 8 41 chain 3911 chr7 159345973 + 29090163 29090226 MER66B 489 + 411 474 92047 29 0 1 5 6 5 23 chain 3995 chr7 159345973 + 29129387 29129432 MLT1C 463 + 54 99 91479 45 chain 2862 chr7 159345973 + 29137798 29137830 MLT1F2 592 + 560 592 101148 32 chain 25723 chr7 159345973 + 29175907 29176215 AluY 311 + 3 302 48134 129 0 1 162 10 0 7 chain 10478 chr7 159345973 + 29228328 29228477 Tigger3a 397 + 161 333 69455 97 13 36 39 chain 124701 chr7 159345973 + 29263048 29264829 SVA_B 1603 + 41 1603 14746 445 116 0 186 0 40 116 42 0 23 59 31 25 0 1 26 34 0 6 3 1 8 0 1 26 0 1 4 40 1 516 0 2 70 4 5 19 4 0 9 chain 2174 chr7 159345973 + 29263917 29263953 SVA_B 1603 + 916 952 62903 36 chain 2053 chr7 159345973 + 29264086 29264120 SVA_B 1603 + 1016 1050 62903 34 chain 4073 chr7 159345973 + 29376514 29376564 MER5A 189 + 116 166 90934 50 chain 4898 chr7 159345973 + 29446157 29446280 L1PB1 5432 + 5312 5430 86160 14 26 27 17 1 0 22 1 0 12 1 0 14 2 0 8 1 0 4 chain 4798 chr7 159345973 + 29504276 29504363 L1MA3 4352 + 4271 4351 86709 11 1 0 4 1 0 31 1 0 11 6 2 21 chain 21171 chr7 159345973 + 29520762 29521040 L1MA1 4479 + 2918 3191 54921 43 1 0 24 6 4 172 2 0 30 chain 498413 chr7 159345973 + 29528243 29534545 L1PA6 6164 + 0 6148 3187 64 2 3 34 0 3 361 1 0 145 1 4 27 0 242 961 418 0 337 0 1 259 0 3 94 14 14 87 1 0 366 2 0 179 5 7 1195 0 1 265 8 13 351 0 1 254 0 1 40 0 4 660 1 2 13 1 2 4 1 0 151 chain 186591 chr7 159345973 + 29542886 29545709 L1MA2 4263 + 1363 4111 10268 92 8 9 70 9 5 34 11 16 47 35 9 202 0 3 27 18 18 58 3 10 12 3 0 82 4 5 172 0 5 6 20 4 92 15 20 90 2 3 77 1 2 23 0 4 84 4 1 150 3 11 100 4 9 58 5 1 152 58 18 285 10 8 99 0 11 17 25 4 16 5 2 76 1 0 147 4 1 138 1 0 8 11 9 43 7 12 38 13 6 41 1 0 6 chain 117689 chr7 159345973 + 29576744 29578340 THE1D-int 1627 + 0 1621 15941 76 4 0 93 0 1 474 1 2 120 1 16 52 73 85 268 6 4 4 1 0 122 0 3 301 chain 558621 chr7 159345973 + 29579936 29585963 L1PA2 6032 + 2 6032 215 276 0 1 888 1 3 4862 chain 45815 chr7 159345973 + 29700111 29706473 L1PA3long 6157 + 5177 6157 31157 264 5382 0 716 chain 21512 chr7 159345973 + 29765023 29765271 L1PA4 6152 + 5905 6152 54490 242 1 0 5 chain 84653 chr7 159345973 + 29766570 29767844 L1PREC2 3366 + 1816 3036 20694 332 0 1 97 0 1 12 0 4 137 5 4 262 10 8 70 14 12 14 21 5 31 1 0 44 7 3 14 29 21 12 2 0 5 4 1 14 4 2 29 4 1 10 23 9 35 6 4 26 chain 29331 chr7 159345973 + 29784991 29785389 LTR7B 505 + 0 503 42834 105 0 10 69 1 96 42 0 1 42 1 0 23 0 1 52 14 13 49 chain 280537 chr7 159345973 + 29785391 29788872 HERVH-int 3825 + 0 3825 7408 534 5 0 36 2 1 8 2 1 12 22 91 14 1 0 81 6 5 41 0 4 114 0 1 190 0 17 138 0 3 44 9 14 336 4 31 299 0 10 418 6 5 579 0 2 41 9 11 38 0 210 262 7 9 182 0 2 41 chain 28655 chr7 159345973 + 29792127 29792525 LTR7B 505 + 0 503 43864 105 0 10 69 1 96 38 1 2 45 1 0 22 1 2 52 14 13 49 chain 5045 chr7 159345973 + 29826325 29826412 MER5A1 166 + 52 130 85446 32 20 11 35 chain 8486 chr7 159345973 + 29912526 29912635 U13 108 + 0 108 73701 67 1 0 41 chain 3664 chr7 159345973 + 29928242 29928304 MER5A1 166 + 65 127 93887 22 7 8 17 1 0 15 chain 45355 chr7 159345973 + 29938415 29938928 MER9a3 513 + 0 513 31392 513 chain 16147 chr7 159345973 + 29983289 29983465 L1PA2 6032 + 5856 6032 60816 176 chain 5703 chr7 159345973 + 29997583 29997660 MER20 218 + 0 78 82323 28 2 3 47 chain 10038 chr7 159345973 + 30011351 30011505 Tigger3 1187 + 743 906 70335 12 1 0 43 1 0 46 1 9 29 4 7 17 chain 17899 chr7 159345973 + 30059901 30060133 AluSc5 308 + 0 277 58761 96 11 56 125 chain 13251 chr7 159345973 + 30384052 30384233 MER107 203 + 0 186 64708 29 6 8 130 1 4 15 chain 45578 chr7 159345973 + 30436813 30437389 L1PA8 5853 + 5283 5853 31275 281 1 0 44 2 0 71 1 0 61 2 1 19 2 1 92 chain 568816 chr7 159345973 + 30439242 30445274 L1HS 6032 + 0 6032 2 6032 chain 205798 chr7 159345973 + 30480440 30483256 HERVH-int 3825 + 757 3825 9510 6 0 2 16 0 1 352 15 19 18 1 4 51 15 0 145 0 32 28 9 0 127 5 11 50 1 0 4 0 1 361 4 0 43 0 14 44 4 9 522 1 0 185 11 0 214 1 0 3 2 0 9 0 2 213 18 17 38 2 0 55 61 291 49 2 1 131 chain 14267 chr7 159345973 + 30502159 30502362 MER30B 195 + 5 195 63245 89 11 1 54 3 0 46 chain 33934 chr7 159345973 + 30536785 30537261 HERVK14-int 1672 + 13 483 38760 17 1 0 11 5 0 49 1 0 38 1 0 172 7 6 15 10 13 149 chain 524069 chr7 159345973 + 30537513 30543623 L1PA5 6144 + 0 6135 2087 120 0 14 22 0 12 312 0 1 362 0 3 6 3 0 317 9 0 248 0 3 6 5 1 802 0 6 78 0 1 20 1 3 39 0 1 389 2 0 58 0 1 351 1 0 496 1 0 258 1 2 409 0 4 931 1 0 18 1 0 230 3 0 374 0 1 236 chain 7769 chr7 159345973 + 30547155 30547250 THE1B 368 + 274 368 75439 19 1 0 75 chain 56815 chr7 159345973 + 30570051 30570887 LTR12 884 + 0 869 27321 25 1 0 131 66 0 85 37 0 99 3 4 33 2 0 227 0 4 72 0 134 55 chain 2865 chr7 159345973 + 30570208 30570274 LTR12 884 + 222 288 70173 66 chain 2516 chr7 159345973 + 30570359 30570388 LTR12 884 + 175 204 70636 29 chain 17642 chr7 159345973 + 30579929 30580156 AluSg7 307 + 74 298 59077 57 0 1 142 9 5 19 chain 40310 chr7 159345973 + 30584287 30584961 MER4A1_ 611 + 0 609 34442 69 3 5 47 1 2 220 4 17 15 76 0 134 14 6 16 22 24 42 0 1 11 chain 37985 chr7 159345973 + 30607269 30607702 L1PA6 6164 + 5727 6160 36084 433 chain 4484 chr7 159345973 + 30685142 30685210 LTR16E1 515 + 13 80 88424 12 0 3 8 4 0 44 chain 12165 chr7 159345973 + 30718117 30718251 LTR5B 1012 + 0 134 66539 134 chain 45167 chr7 159345973 + 30728137 30728702 MER41A 554 + 0 554 31487 524 11 0 30 chain 28878 chr7 159345973 + 30736633 30737003 THE1C 375 + 0 374 43518 79 0 1 56 1 5 209 1 0 24 chain 6300 chr7 159345973 + 30749298 30749508 MER20 218 + 1 216 79996 14 0 1 4 1 0 53 114 119 24 chain 4377 chr7 159345973 + 30757044 30757093 MER53 195 + 146 195 89013 49 chain 12093 chr7 159345973 + 30783452 30783589 MER85 139 + 0 137 66678 137 chain 39728 chr7 159345973 + 30807526 30807994 LTR2 463 + 0 463 34872 226 6 1 236 chain 86908 chr7 159345973 + 30809786 30811188 Harlequin-int 5206 + 125 1207 20247 7 2 0 94 312 0 80 0 2 68 7 1 106 1 0 31 14 13 155 1 0 397 0 1 127 chain 9503 chr7 159345973 + 30811280 30811500 HERVE_a-int 7009 + 6796 6997 71466 20 1 0 30 11 8 13 1 0 25 2 0 33 51 41 25 2 0 6 chain 40476 chr7 159345973 + 30811519 30811981 LTR2 463 + 1 463 34325 462 chain 54547 chr7 159345973 + 31045612 31046242 L1PA6 6164 + 5525 6162 28027 6 0 7 280 0 1 339 1 0 4 chain 90997 chr7 159345973 + 31147249 31148458 L1PA10 4194 + 3006 4161 19505 117 2 0 10 4 7 410 58 1 358 11 17 190 3 0 34 1 0 11 chain 3429 chr7 159345973 + 31147814 31147850 L1PA10 4194 + 3511 3547 95829 36 chain 99143 chr7 159345973 + 31153071 31154245 SVA_A 1864 + 15 1861 18394 301 0 3 209 7 677 172 1 0 484 chain 24499 chr7 159345973 + 31226168 31226506 THE1A 353 + 0 337 50023 109 2 1 92 1 0 108 6 7 20 chain 126707 chr7 159345973 + 31226522 31228089 THE1A-int 1579 + 0 1566 14449 36 0 1 268 1 2 50 7 0 118 0 1 38 0 1 93 4 7 49 1 0 902 chain 26331 chr7 159345973 + 31228104 31228454 THE1A 353 + 2 353 47225 107 12 11 71 0 3 8 1 0 151 chain 10242 chr7 159345973 + 31240150 31240274 MER2 342 + 123 247 69915 124 chain 223443 chr7 159345973 + 31280374 31282836 L1PA3long 6157 + 3682 6144 8947 106 1 0 1602 0 1 753 chain 4304 chr7 159345973 + 31295798 31295953 MER5A 189 + 0 159 89471 23 82 85 38 1 2 11 chain 51014 chr7 159345973 + 31324451 31325050 L1PA5 6144 + 5552 6144 29208 446 6 0 89 2 1 56 chain 4339 chr7 159345973 + 31484082 31484156 L1PB1 5432 + 4939 5014 89236 14 13 14 47 chain 87866 chr7 159345973 + 31587025 31587981 L1PA3long 6157 + 4031 4987 20074 956 chain 551683 chr7 159345973 + 31619618 31625771 L1PA3long 6157 + 0 6147 625 1190 1 4 563 1 2 503 0 2 433 2 0 574 0 2 91 0 2 725 22 6 1565 0 1 470 0 1 13 chain 14155 chr7 159345973 + 31672782 31673149 THE1D 372 + 0 372 63372 62 179 184 126 chain 26103 chr7 159345973 + 31719920 31720198 AluYb8 318 + 40 317 47567 83 1 0 194 chain 4341 chr7 159345973 + 31755716 31755769 L1MC3 1789 + 1334 1386 89226 43 1 0 9 chain 65759 chr7 159345973 + 31757552 31758294 L1PA5 6144 + 5389 6132 25011 609 5 6 128 chain 111286 chr7 159345973 + 31833341 31834866 THE1B-int 1605 + 0 1605 16908 43 4 5 136 0 3 36 0 1 202 0 25 119 7 21 22 3 37 128 1 2 337 62 2 20 0 60 71 1 0 78 0 1 250 0 1 5 chain 25805 chr7 159345973 + 31905724 31906123 THE1C 375 + 0 375 48007 124 3 0 11 0 4 64 52 28 118 1 0 26 chain 461724 chr7 159345973 + 31927232 31933227 L1PA8 5853 + 117 5849 4090 13 0 1 108 33 33 29 8 12 279 4 8 7 0 6 436 0 1 161 0 7 367 2 0 77 0 1 363 3 0 455 0 4 87 1 0 175 5 19 61 0 1 101 0 4 26 0 5 119 1 0 66 0 5 65 1 0 264 327 0 105 1 0 884 0 22 511 7 5 74 1 4 476 1 0 46 2 0 68 20 18 43 3 2 19 1 0 89 chain 50848 chr7 159345973 + 31946204 31946821 LTR14B 630 + 0 616 29256 552 1 0 64 chain 3562 chr7 159345973 + 31954692 31954731 MADE1 96 + 1 40 94729 39 chain 542797 chr7 159345973 + 31963968 31970152 L1PA4 6152 + 1 6151 1152 34 8 4 98 0 1 598 1 0 304 1 0 2645 1 2 39 0 1 1050 21 0 384 10 0 990 chain 6713 chr7 159345973 + 32043019 32043162 MER20 218 + 0 160 78595 14 24 44 19 20 17 66 chain 555048 chr7 159345973 + 32081893 32088011 L1PA3long 6157 + 20 6157 406 617 0 12 652 0 2 3648 0 1 358 0 4 843 chain 26524 chr7 159345973 + 32113820 32114156 L1PA8 5853 + 4034 4372 46942 148 1 2 160 0 1 27 chain 42082 chr7 159345973 + 32114162 32114675 L1PA8 5853 + 4385 4902 33303 294 3 7 216 chain 50896 chr7 159345973 + 32114675 32115338 L1PA8 5853 + 4906 5564 29242 103 2 0 48 2 1 26 0 2 370 4 1 64 1 0 43 chain 3699 chr7 159345973 + 32115340 32115384 L1PA8 5853 + 5565 5609 93612 44 chain 16968 chr7 159345973 + 32115386 32115633 L1PA8 5853 + 5609 5853 59836 68 1 0 67 1 0 16 7 6 87 chain 468082 chr7 159345973 + 32119582 32125828 L1PA8A 6298 + 34 6290 3907 6 1 0 13 7 6 11 18 7 23 4 1 18 19 10 14 6 5 9 2 1 12 1 25 9 2 0 4 1 0 13 25 21 10 13 8 6 2 0 30 9 8 26 8 0 77 2 0 14 1 0 11 8 6 58 49 48 236 1 0 21 0 1 4 5 0 47 6 18 20 6 8 148 6 7 68 6 20 6 0 1 81 1 0 22 0 1 8 2 0 37 9 4 7 0 5 508 0 1 172 12 8 29 0 1 57 3 15 253 1 0 31 1 3 366 0 4 207 0 4 424 0 2 109 0 1 283 20 21 109 0 1 23 4 10 294 0 1 5 1 0 143 1 2 272 0 2 343 0 1 117 22 0 104 0 3 127 0 1 118 2 5 796 chain 6529 chr7 159345973 + 32134555 32134628 L1PA8 5853 + 5491 5564 79233 73 chain 20822 chr7 159345973 + 32134629 32134917 L1PA8 5853 + 5564 5846 55334 46 2 0 69 1 0 9 1 0 52 2 1 19 4 3 83 chain 9663 chr7 159345973 + 32172241 32172350 L1PA8A 6298 + 5380 5489 71135 109 chain 62276 chr7 159345973 + 32172352 32173468 L1PA8A 6298 + 5490 6288 25800 182 321 6 120 2 0 208 3 1 182 3 4 95 chain 259352 chr7 159345973 + 32181109 32184001 L1PA4 6152 + 2448 5344 7990 342 1 0 825 0 1 1688 0 4 36 chain 35827 chr7 159345973 + 32281715 32282165 L1PA6 6164 + 5697 6162 37512 134 0 1 78 0 12 81 14 16 143 chain 538746 chr7 159345973 + 32307744 32313914 L1PA4 6152 + 1 6151 1411 87 0 1 310 3 0 181 1 0 256 17 0 1338 1 0 451 1 0 891 1 0 1307 9 11 357 0 1 373 0 1 410 21 27 10 8 1 137 chain 9183 chr7 159345973 + 32340621 32341012 L1MC1 2226 + 1854 2198 72157 35 5 0 28 1 0 38 26 23 14 2 0 18 159 125 12 21 20 17 1 0 14 chain 4235 chr7 159345973 + 32346222 32346270 MER45C 884 + 97 145 89914 48 chain 27651 chr7 159345973 + 32370464 32370786 L1PA6 6164 + 5832 6154 45393 322 chain 5473 chr7 159345973 + 32431551 32431618 MER92B 628 + 0 67 83341 67 chain 28081 chr7 159345973 + 32438971 32439321 MLT2A1 477 + 0 355 44744 142 0 1 25 1 5 25 0 1 6 1 0 150 chain 3347 chr7 159345973 + 32443108 32443149 LTR42 492 + 187 229 96622 9 0 1 32 chain 27630 chr7 159345973 + 32443330 32444560 L1PREC2 3366 + 2479 3242 45420 37 16 15 39 0 1 170 360 25 31 10 9 12 37 35 14 28 21 12 2 0 5 4 1 15 3 1 29 37 20 32 20 16 29 237 148 22 5 0 24 chain 544559 chr7 159345973 + 32464533 32470565 L1PA3long 6157 + 4 6157 1051 148 0 1 109 9 0 102 0 1 403 8 136 1196 0 1 596 1 0 1649 0 3 1803 3 0 5 chain 20209 chr7 159345973 + 32497091 32497346 AluSq2 311 + 21 275 56129 5 3 0 106 0 2 141 chain 32881 chr7 159345973 + 32514433 32514933 LTR7 482 + 0 482 39600 86 50 0 13 17 16 129 3 34 141 12 14 49 chain 26752 chr7 159345973 + 32520818 32521163 THE1A 353 + 8 353 46610 102 1 0 169 0 1 73 chain 126516 chr7 159345973 + 32521163 32522729 THE1A-int 1579 + 0 1576 14480 169 2 1 5 0 1 104 0 2 358 0 8 84 10 7 108 1 0 33 0 3 41 2 3 649 chain 24691 chr7 159345973 + 32522729 32523067 THE1A 353 + 0 341 49750 105 16 15 200 1 5 16 chain 205380 chr7 159345973 + 32598056 32600646 L1PA8 5853 + 2451 5068 9525 32 1 5 39 1 0 355 4 0 299 29 41 58 0 1 15 0 1 14 0 3 6 3 0 69 5 6 216 0 1 40 0 1 423 0 1 17 1 0 114 0 2 5 2 1 258 0 6 527 0 2 15 0 2 42 chain 27984 chr7 159345973 + 32600646 32600947 AluYa5 310 + 0 299 44895 123 2 0 176 chain 75002 chr7 159345973 + 32624350 32625238 L1PA7 6471 + 5572 6457 22842 49 1 0 89 2 0 421 1 0 176 1 2 148 chain 11289 chr7 159345973 + 32643204 32643374 Tigger1 2417 + 2224 2417 68096 32 1 0 84 2 1 22 7 32 22 chain 552729 chr7 159345973 + 32708015 32714171 L1PA3long 6157 + 10 6153 566 703 0 2 283 1 0 1700 1 0 560 0 4 102 0 2 711 1 0 14 22 6 1794 8 7 242 1 0 13 chain 130792 chr7 159345973 + 32753148 32754796 SVA_B 1603 + 6 1603 13945 13 10 4 19 8 5 597 79 0 106 0 1 73 0 82 53 48 3 14 1 0 627 chain 7109 chr7 159345973 + 32753795 32753874 SVA_B 1603 + 528 607 57564 79 chain 43574 chr7 159345973 + 32762469 32762968 LTR2C 499 + 0 499 32397 499 chain 118144 chr7 159345973 + 32772809 32774250 L1PA7 6471 + 5029 6469 15860 68 1 0 286 0 1 206 0 9 22 1 0 82 0 1 150 0 1 251 10 0 20 6 5 338 chain 3447 chr7 159345973 + 32786448 32786492 MADE1 96 + 2 46 95677 44 chain 11637 chr7 159345973 + 32798549 32798688 THE1D 372 + 233 372 67500 139 chain 71932 chr7 159345973 + 32800334 32801291 LTR13 1007 + 0 956 23563 73 2 0 204 0 1 103 4 5 186 1 0 56 2 1 54 31 31 101 0 1 140 chain 98962 chr7 159345973 + 32824950 32826012 L1PA3long 6157 + 4000 5062 18417 1062 chain 33002 chr7 159345973 + 32832560 32833005 LTR7 482 + 0 470 39512 100 21 15 138 1 0 6 5 36 70 1 2 103 chain 280017 chr7 159345973 + 32833019 32836612 HERVH-int 3825 + 0 3825 7422 49 0 1 278 15 16 17 19 20 77 17 286 39 60 1 51 0 4 348 7 0 39 15 0 220 0 1 22 0 1 24 0 1 295 48 62 153 1 5 62 24 29 673 2 4 230 0 4 144 0 3 71 0 2 593 chain 7056 chr7 159345973 + 32855108 32855296 MER3 215 + 8 200 77415 17 69 70 21 11 14 70 chain 24958 chr7 159345973 + 32924318 32924610 AluSp 311 + 7 298 49351 173 1 0 118 chain 5565 chr7 159345973 + 32937379 32937456 LTR23 429 + 343 420 82960 33 1 0 35 0 1 8 chain 3646 chr7 159345973 + 33096757 33096802 MER66B 489 + 295 340 94057 45 chain 131045 chr7 159345973 + 33169998 33171417 L1PA2 6032 + 3412 4831 13922 1419 chain 7522 chr7 159345973 + 33177739 33177831 5S 121 + 0 92 76072 92 chain 35335 chr7 159345973 + 33179882 33180361 LTR10A 586 + 23 533 37811 36 0 8 7 5 6 21 0 21 15 4 3 62 5 6 305 0 1 19 chain 113102 chr7 159345973 + 33218792 33220121 LTR12C 1709 + 0 1709 16664 491 0 1 158 0 278 184 1 0 4 4 2 106 0 4 43 1 0 125 0 102 129 1 0 82 chain 130088 chr7 159345973 + 33303518 33305150 SVA_A 1864 + 8 1864 14030 10 6 0 99 0 10 525 3 74 42 0 184 182 3 0 10 1 0 10 0 2 14 10 7 29 3 0 35 4 1 68 45 17 100 1 5 432 chain 24365 chr7 159345973 + 33319654 33319957 L1PB1 5432 + 4413 4713 50225 215 4 0 69 0 1 15 chain 18471 chr7 159345973 + 33385931 33386141 L1PA5 6144 + 5934 6144 58131 210 chain 56530 chr7 159345973 + 33396537 33397295 L1PA11 4918 + 3552 4487 27418 61 0 1 51 0 1 244 5 6 56 0 1 53 8 185 120 0 1 59 19 18 64 4 0 14 chain 236104 chr7 159345973 + 33575328 33578060 L1PA6 6164 + 3422 6160 8568 283 0 2 184 4 5 1021 0 3 201 0 1 193 0 2 837 3 0 6 chain 6107 chr7 159345973 + 33583783 33583876 MIR 256 + 64 154 80702 69 0 2 5 2 0 9 3 0 5 chain 92636 chr7 159345973 + 33594890 33596187 L1PA8 5853 + 4531 5853 19250 70 1 12 187 0 1 5 2 1 83 0 1 4 3 0 4 0 1 87 16 22 73 0 2 307 8 21 35 1 2 115 1 0 46 2 0 68 22 20 40 6 5 16 3 2 92 chain 14193 chr7 159345973 + 33747500 33747734 MER47A 366 + 19 263 63327 17 0 1 20 39 48 158 chain 23715 chr7 159345973 + 33756735 33757042 AluSx4 309 + 0 299 51255 29 8 5 254 5 0 11 chain 23166 chr7 159345973 + 33828635 33829019 MSTA 426 + 0 426 52122 100 25 48 51 2 0 5 2 0 8 24 27 57 3 23 107 chain 23235 chr7 159345973 + 33860437 33860780 THE1B 368 + 2 359 52029 42 9 24 98 10 8 24 9 11 84 1 0 66 chain 6644 chr7 159345973 + 33880981 33881142 LTR37A 408 + 3 172 78832 54 59 68 29 1 0 18 chain 21288 chr7 159345973 + 33997296 33997661 THE1D 372 + 0 360 54784 53 22 10 72 52 59 166 chain 4032 chr7 159345973 + 34100975 34101084 MER5A1 166 + 52 161 91230 38 8 9 13 31 30 19 chain 20621 chr7 159345973 + 34183755 34184112 THE1D 372 + 2 360 55607 50 23 24 4 1 0 80 50 51 149 chain 3240 chr7 159345973 + 34312961 34312998 MADE1 96 - 1 38 97572 37 chain 27443 chr7 159345973 + 34388018 34388378 THE1C 375 + 5 363 45650 102 2 3 14 9 6 46 0 1 172 1 0 14 chain 506923 chr7 159345973 + 34431331 34437451 L1PA6 6164 + 0 6162 2892 194 1 2 4 1 0 265 1 0 322 0 17 371 15 10 267 14 15 19 8 0 398 0 1 327 0 2 38 0 1 78 1 12 846 4 5 314 12 7 525 0 5 61 0 2 133 0 14 306 0 1 454 0 1 298 0 3 11 0 1 170 0 3 149 0 1 213 1 2 11 0 1 123 8 5 5 1 0 134 1 0 6 1 0 9 chain 48017 chr7 159345973 + 34446429 34447029 L1PA7 6471 + 5870 6469 30289 5 1 0 433 1 2 33 1 0 126 chain 516736 chr7 159345973 + 34456943 34463336 L1PA7 6471 + 5 6465 2435 239 0 10 132 5 15 10 0 1 150 0 1 32 5 6 154 1 0 431 0 11 81 8 7 474 1 0 51 2 1 65 0 2 201 3 4 401 5 21 730 0 1 210 0 4 46 0 4 938 0 1 221 5 6 441 2 0 5 1 3 203 0 1 141 6 12 76 1 0 759 0 1 157 chain 528427 chr7 159345973 + 34513494 34519290 L1PA2 6032 + 37 6021 1899 7 0 2 210 1 0 485 0 1 1100 0 1 313 0 186 1049 0 1 2589 1 0 31 1 0 9 chain 7487 chr7 159345973 + 34529576 34529667 L1P4 1494 + 592 683 76155 91 chain 13056 chr7 159345973 + 34531265 34531557 L1MC1 2226 + 1767 2047 65014 75 15 12 24 16 10 27 1 0 43 43 38 11 12 15 25 chain 451371 chr7 159345973 + 34575797 34580970 L1PA4 6152 + 0 5190 4352 5 1 0 994 0 1 2183 1 0 66 0 4 708 0 7 116 0 1 382 4 8 219 0 1 4 1 0 91 0 2 398 chain 35903 chr7 159345973 + 34595126 34595574 MER4A1 472 + 0 472 37474 227 1 0 8 0 21 17 3 7 192 chain 459844 chr7 159345973 + 34628548 34639004 L1PA7 6471 + 741 6465 4130 472 0 4 344 2 0 211 4793 15 661 0 1 183 0 1 336 0 10 117 0 4 522 7 8 137 0 1 249 0 1 478 17 21 201 0 1 6 0 1 19 4 0 27 0 3 180 1 0 112 0 16 112 0 1 71 3 1 354 1 6 655 0 3 54 2 3 116 3 0 6 chain 18828 chr7 159345973 + 34631891 34632108 L1PA4 6152 + 3705 3922 57743 217 chain 38031 chr7 159345973 + 34632108 34632544 L1PA4 6152 + 3923 4359 36053 436 chain 89433 chr7 159345973 + 34632544 34633541 L1PA4 6152 + 4360 5357 19767 997 chain 30639 chr7 159345973 + 34654824 34655262 LTR7B 505 + 0 503 41436 103 11 12 57 0 38 15 3 27 26 0 2 42 0 1 44 1 0 21 0 1 52 14 13 49 chain 3329 chr7 159345973 + 34767892 34767944 L1MA5A 2387 + 2241 2291 96779 29 5 3 18 chain 68314 chr7 159345973 + 34784773 34785533 L1PA3long 6157 + 5389 6149 24382 760 chain 376788 chr7 159345973 + 34799407 34803727 L1PA3long 6157 + 1834 6157 5539 114 1 0 1228 0 1 507 6 5 550 0 4 1914 chain 517292 chr7 159345973 + 34813939 34820050 L1PA6 6164 + 0 6134 2410 243 0 8 12 0 1 71 7 16 218 1 0 251 1 2 372 4 1 394 0 3 95 4 7 631 0 1 857 7 9 504 1 0 254 0 1 1308 0 1 53 0 3 336 0 1 64 8 2 415 chain 121232 chr7 159345973 + 34862951 34864382 L1PA7 6471 + 5029 6470 15312 182 0 1 171 0 1 230 0 4 91 0 1 11 2 1 132 0 1 217 0 3 395 chain 3550 chr7 159345973 + 34876576 34876620 MADE1 96 + 2 46 94840 44 chain 25344 chr7 159345973 + 34894297 34894712 MSTA 426 + 0 426 48719 32 1 2 98 46 49 55 6 4 59 11 19 33 0 1 74 chain 5263 chr7 159345973 + 34901564 34901644 MADE1 96 - 0 96 84368 38 6 22 36 chain 543479 chr7 159345973 + 34906240 34912250 L1PA3long 6157 + 0 6157 1107 152 0 1 211 0 1 412 1 129 2038 0 1 177 0 1 1216 0 13 1798 0 2 5 chain 74201 chr7 159345973 + 34914647 34915463 L1PA3long 6157 + 4677 5491 23032 159 2 0 655 chain 59851 chr7 159345973 + 34915463 34916128 L1PA3long 6157 + 5492 6157 26414 665 chain 24324 chr7 159345973 + 34924003 34924345 THE1B 368 + 0 368 50299 44 0 15 23 8 7 83 1 0 22 9 17 74 0 1 20 0 4 58 chain 38887 chr7 159345973 + 34933456 34933968 MLT2A2 560 + 0 522 35441 44 0 1 138 1 0 13 3 2 208 10 21 95 chain 19506 chr7 159345973 + 34958981 34959215 L1PA7 6471 + 5572 5810 57017 53 0 5 80 1 0 100 chain 53788 chr7 159345973 + 34959215 34959857 L1PA7 6471 + 5811 6453 28289 642 chain 11314 chr7 159345973 + 34977069 34977209 Tigger1 2417 + 2224 2363 68063 32 1 0 107 chain 6297 chr7 159345973 + 34992393 34992471 LTR24B 570 + 46 128 80010 42 0 3 15 0 1 21 chain 29052 chr7 159345973 + 35017211 35017522 AluYb9 318 + 0 309 43248 123 2 0 186 chain 3638 chr7 159345973 + 35021152 35021190 tRNA-Gly-GGA 38 + 0 38 94120 38 chain 14130 chr7 159345973 + 35070271 35070476 THE1D-int 1627 + 1420 1627 63405 131 21 23 53 chain 547727 chr7 159345973 + 35092957 35098972 L1PA2 6032 + 2 6029 882 1286 5 6 1111 0 3 1968 0 4 467 0 2 892 0 1 132 0 1 154 chain 80694 chr7 159345973 + 35099530 35100867 L1MA3 4352 + 3092 4352 21493 93 1 0 198 3 0 201 24 8 281 51 26 18 7 12 165 79 59 16 2 0 5 0 2 82 2 0 24 1 0 6 1 0 6 8 0 13 8 7 14 6 2 22 chain 3744 chr7 159345973 + 35105282 35105323 Tigger4a 237 - 193 234 93307 41 chain 69712 chr7 159345973 + 35110487 35111580 Tigger1 2417 + 1097 2176 24071 46 26 23 72 1 2 145 13 39 100 0 5 83 98 28 290 1 2 134 0 3 18 8 31 58 chain 84799 chr7 159345973 + 35115868 35116782 L1PA3long 6157 + 4569 5483 20661 914 chain 60737 chr7 159345973 + 35116782 35117454 L1PA3long 6157 + 5485 6157 26167 672 chain 530577 chr7 159345973 + 35151826 35157946 L1PA5 6144 + 3 6135 1804 623 0 2 2586 0 1 23 0 1 143 0 4 1117 0 1 46 0 1 105 1 0 361 1 0 277 1 0 98 0 3 289 0 2 449 chain 11602 chr7 159345973 + 35165030 35165164 L1PA5 6144 + 5776 5909 67565 115 1 0 18 chain 26038 chr7 159345973 + 35169706 35170236 L1PA15 4387 + 3840 4354 47671 25 38 36 32 1 0 24 12 25 122 2 1 25 1 0 54 4 3 20 4 0 10 1 0 17 8 1 27 0 1 4 10 7 16 3 0 16 0 1 4 28 21 22 chain 84204 chr7 159345973 + 35402546 35403539 L1PA7 6471 + 5462 6457 20763 159 1 0 88 1 2 426 1 0 87 0 3 230 chain 7668 chr7 159345973 + 35424539 35424671 L1MB1 2102 + 1799 1930 75710 53 26 25 53 chain 5650 chr7 159345973 + 35433320 35433384 L1PA16 3655 + 1892 1956 82563 64 chain 19537 chr7 159345973 + 35473812 35474176 THE1B 368 + 0 368 56973 111 27 29 37 42 37 10 11 19 63 7 6 56 chain 3951 chr7 159345973 + 35657960 35658033 L1MA4A 3247 + 3054 3131 91757 23 4 0 24 6 14 16 chain 136645 chr7 159345973 + 35682390 35684099 L1PB1 5432 + 3289 5006 13371 276 0 1 18 5 1 201 1 0 348 4 5 382 0 4 20 5 6 77 0 2 31 0 5 138 1 0 202 chain 20908 chr7 159345973 + 35686523 35686745 AluYa5 310 + 86 308 55244 222 chain 61183 chr7 159345973 + 35696264 35697010 LTR17 781 + 0 773 26064 327 1 0 102 2 30 314 chain 10762 chr7 159345973 + 35699025 35699269 L1PB1 5432 + 5195 5427 68936 25 2 1 10 7 13 37 1 0 15 26 13 18 2 0 5 1 0 14 2 0 27 6 8 11 0 3 9 1 0 18 2 0 5 chain 58626 chr7 159345973 + 35783438 35784131 L1PA6 6164 + 5471 6162 26780 302 1 0 243 4 3 143 chain 3102 chr7 159345973 + 35854083 35854116 Tigger4a 237 - 197 230 98782 33 chain 153318 chr7 159345973 + 35910278 35912115 HERVK9-int 4720 + 2243 4720 12158 408 13 652 4 1 0 326 1 0 414 1 0 286 1 0 118 0 4 164 0 1 100 chain 44492 chr7 159345973 + 35912115 35912628 MER9a2 513 + 0 513 31833 513 chain 6714 chr7 159345973 + 35993212 35993302 L1PB 1623 + 1363 1453 78591 62 0 1 20 1 0 7 chain 9620 chr7 159345973 + 36001019 36001146 MLT1D 503 + 0 129 71220 18 2 4 107 chain 17945 chr7 159345973 + 36014101 36014435 THE1B 368 + 2 345 58707 11 2 0 34 0 1 42 26 27 59 58 67 102 chain 42775 chr7 159345973 + 36038521 36039034 MER41A 554 + 0 522 32900 443 0 4 21 0 5 49 chain 506898 chr7 159345973 + 36119955 36126143 L1PA6 6164 + 0 6160 2897 274 7 19 156 19 0 120 1 0 61 19 22 136 1 18 640 0 1 134 2 1 366 0 2 43 0 1 295 1 2 36 16 0 188 0 1 260 11 5 403 0 1 4 0 1 471 0 7 300 0 1 698 0 1 250 0 1 596 7 0 22 31 1 116 7 8 340 3 4 154 chain 97719 chr7 159345973 + 36196442 36197906 SVA_A 1864 + 27 1864 18560 11 14 9 46 0 11 69 8 6 470 4 1 58 16 13 42 1 0 20 138 0 53 9 485 24 0 16 123 3 1 223 0 20 119 0 4 13 chain 2348 chr7 159345973 + 36197201 36197288 SVA_A 1864 + 930 1114 86536 15 3 0 14 33 132 18 0 1 4 chain 6524 chr7 159345973 + 36201953 36202033 MER5A1 166 + 13 92 79256 74 1 0 5 chain 78003 chr7 159345973 + 36236124 36237331 LTR12D 1347 + 0 1347 22100 45 0 6 80 0 1 60 0 13 17 0 3 45 14 14 22 98 27 102 0 2 24 10 40 35 1 32 129 0 17 102 0 1 100 10 119 13 1 0 14 20 19 265 chain 30580 chr7 159345973 + 36243715 36244057 L1PA3long 6157 + 5817 6157 41490 5 3 0 4 0 1 330 chain 20854 chr7 159345973 + 36276051 36276338 MER41B 635 + 2 285 55302 50 7 4 71 1 2 96 2 0 60 chain 21482 chr7 159345973 + 36320189 36320531 THE1B 368 + 2 368 54536 42 13 28 95 6 5 26 35 45 125 chain 31540 chr7 159345973 + 36320547 36320935 THE1B-int 1605 + 18 406 40712 388 chain 20898 chr7 159345973 + 36322445 36322790 THE1B 368 + 21 357 55257 25 0 15 111 1 0 26 75 52 107 chain 20667 chr7 159345973 + 36332941 36333175 L1P3 4156 + 731 965 55545 234 chain 3593 chr7 159345973 + 36339478 36339516 MER5A1 166 + 100 138 94497 38 chain 48019 chr7 159345973 + 36383270 36383817 L1PA7 6471 + 5917 6464 30288 547 chain 71339 chr7 159345973 + 36465538 36466513 MER11A 1151 + 28 1151 23687 17 11 110 139 4 0 32 0 2 112 7 8 38 0 1 47 12 13 135 6 9 52 0 4 31 2 0 41 6 40 49 0 9 234 chain 79087 chr7 159345973 + 36467328 36468330 LTR13 1007 + 0 1007 21845 72 2 0 33 0 2 274 4 5 300 11 15 114 0 1 159 2 1 31 chain 5434 chr7 159345973 + 36524849 36524912 MLT1A0 366 + 275 338 83540 63 chain 37793 chr7 159345973 + 36634173 36634635 LTR2 463 + 0 463 36211 362 12 13 88 chain 64776 chr7 159345973 + 36649382 36650207 LTR17 781 + 0 781 25243 327 1 0 374 21 0 42 23 1 37 chain 31018 chr7 159345973 + 36659793 36660261 LTR7C 471 + 0 471 41106 97 3 0 10 0 1 35 63 67 227 0 1 33 chain 32246 chr7 159345973 + 36672358 36672785 L1PA8 5853 + 5430 5853 40153 90 0 1 24 0 1 18 1 0 46 2 0 69 1 0 61 2 1 19 1 0 93 chain 2920 chr7 159345973 + 36684421 36684452 L1MC5 759 + 261 292 100671 31 chain 38011 chr7 159345973 + 36704353 36704830 L1P3 4156 + 3667 4139 36062 187 5 6 26 3 0 219 13 10 24 chain 3291 chr7 159345973 + 36708876 36708918 Tigger1 2417 + 414 460 97102 36 0 4 6 chain 390922 chr7 159345973 + 36712588 36716970 L1PA4 6152 + 1743 6138 5308 512 1 3 116 1 3 473 0 2 1499 0 4 924 1 0 21 0 1 98 0 3 736 chain 53164 chr7 159345973 + 36763718 36764466 LTR12D 1347 + 410 1347 28508 110 25 221 259 2 1 19 20 16 14 2 1 24 8 7 265 chain 22244 chr7 159345973 + 36823628 36823919 AluSp 311 + 7 300 53485 103 1 2 93 1 2 93 chain 85710 chr7 159345973 + 36835712 36836819 L1PA8 5853 + 4737 5853 20500 74 0 19 168 0 3 8 6 0 75 0 2 51 8 6 421 1 0 45 2 0 70 16 14 7 1 0 40 2 1 112 chain 150288 chr7 159345973 + 36845975 36847773 L1PA7 6471 + 4666 6468 12327 657 0 4 35 0 1 335 0 2 53 8 6 326 1 0 4 0 1 217 3 1 111 0 1 48 chain 19920 chr7 159345973 + 36935034 36935372 THE1B 368 + 0 346 56495 111 11 12 54 59 66 103 chain 132049 chr7 159345973 + 36973562 36975105 LTR12C 1709 + 0 1709 13823 262 0 2 22 0 4 409 0 159 254 1 0 5 3 1 106 0 4 481 chain 533515 chr7 159345973 + 37120163 37126295 L1PA5 6144 + 3 6132 1680 132 0 14 1278 1 0 242 9 0 270 1 0 527 0 1 27 0 1 681 1 0 734 0 3 1516 11 1 702 chain 240543 chr7 159345973 + 37137836 37141507 L1PB1 5432 + 2071 5423 8459 284 2 3 19 10 32 86 13 0 56 6 2 269 1 0 11 1 0 72 0 1 84 1 0 413 0 1 24 0 3 261 0 4 37 0 3 594 317 0 42 8 9 118 0 1 8 4 3 62 1 0 48 0 1 84 2 1 160 0 1 230 22 16 25 1 0 7 1 0 12 5 1 9 2 0 52 2 1 15 0 1 9 0 16 15 5 4 15 2 0 6 15 6 18 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 19 chain 491789 chr7 159345973 + 37153166 37159308 L1PA6 6164 + 0 6161 3378 351 50 52 46 19 0 120 1 0 235 1 18 139 1 0 489 0 2 50 0 1 356 0 5 281 13 10 112 6 0 37 0 7 14 12 0 773 10 15 74 1 0 129 0 1 185 1 5 397 0 2 362 1 0 81 11 19 32 0 1 107 1 5 459 1 0 138 1 0 202 0 4 420 0 1 156 2 1 103 0 1 6 1 2 4 1 0 14 0 1 136 chain 182119 chr7 159345973 + 37251576 37253731 L1PA7 6471 + 4304 6470 10486 422 23 23 385 0 1 238 0 1 247 0 3 746 1 2 81 0 5 12 chain 94344 chr7 159345973 + 37279919 37281375 L1PB1 5432 + 4034 5424 18993 595 0 1 182 34 32 35 15 16 99 4 3 80 0 1 25 49 11 24 36 29 23 5 10 20 2 1 16 1 0 44 1 0 15 3 0 17 12 2 12 8 5 14 0 5 6 7 0 13 1 0 21 1 0 13 1 0 10 1 0 6 1 0 4 chain 159643 chr7 159345973 + 37291915 37293726 SVA_D 2077 + 0 2070 11772 14 4 6 667 0 40 35 0 40 76 0 83 26 0 51 36 5 1 277 0 49 37 2 0 632 chain 11560 chr7 159345973 + 37317383 37317536 L1MA2 4263 + 3965 4114 67643 93 4 0 11 0 1 35 1 0 9 chain 43375 chr7 159345973 + 37337017 37337525 L1PA4 6152 + 5608 6140 32527 230 4 28 274 chain 4988 chr7 159345973 + 37351142 37351200 U6 107 + 0 58 85709 58 chain 15581 chr7 159345973 + 37356445 37356615 L1PA7 6471 + 6134 6304 61553 170 chain 12242 chr7 159345973 + 37356622 37356770 L1PA7 6471 + 6322 6470 66391 148 chain 27009 chr7 159345973 + 37384438 37384736 AluYk4 311 + 0 298 46257 298 chain 7078 chr7 159345973 + 37435132 37435214 HY3 101 + 18 100 77338 82 chain 29222 chr7 159345973 + 37437687 37438005 AluYb8 318 + 0 314 43014 123 2 0 3 2 0 188 chain 14719 chr7 159345973 + 37453012 37453224 MER30 238 + 0 236 62647 106 4 22 19 0 7 45 3 0 22 1 3 12 chain 3103 chr7 159345973 + 37469901 37469941 THE1B 368 + 328 368 98768 40 chain 14525 chr7 159345973 + 37495383 37495659 L1PB1 5432 + 5168 5418 62870 52 2 1 15 1 0 45 1 0 15 1 0 6 24 6 18 9 6 14 2 0 24 1 0 22 0 3 9 1 0 14 chain 2838 chr7 159345973 + 37598436 37598479 MER58A 224 + 48 85 101350 27 6 0 10 chain 3603 chr7 159345973 + 37618226 37618419 MLT2B1 522 + 98 296 94403 36 136 141 21 chain 4973 chr7 159345973 + 37643814 37643974 MER76 683 + 0 168 85788 25 80 89 31 1 0 23 chain 41012 chr7 159345973 + 37672564 37673079 MLT2A2 560 + 0 557 33963 183 1 0 125 0 32 62 0 11 144 chain 12658 chr7 159345973 + 37702595 37702733 L1PA2 6032 + 5878 6016 65704 138 chain 5657 chr7 159345973 + 37732239 37732318 MADE1 96 + 0 95 82522 42 1 17 36 chain 9559 chr7 159345973 + 37762989 37763171 L1P3b 214 + 1 175 71350 22 20 15 16 11 12 77 1 0 22 3 0 10 chain 48118 chr7 159345973 + 37764435 37765103 L1PA8 5853 + 5185 5853 30254 374 15 14 35 2 0 67 26 31 33 3 2 19 1 0 93 chain 118902 chr7 159345973 + 37775463 37777022 THE1C-int 1605 + 1 1598 15724 11 4 3 60 0 9 231 12 18 51 1 0 23 10 11 27 0 7 817 0 4 115 1 14 196 chain 193794 chr7 159345973 + 37807959 37810082 L1PA3long 6157 + 4029 6157 9937 323 0 1 695 0 1 823 0 3 282 chain 34614 chr7 159345973 + 37817144 37817578 MER57A1 433 + 0 433 38279 70 1 0 363 chain 47015 chr7 159345973 + 37846315 37846856 L1PA7 6471 + 5929 6470 30653 541 chain 14045 chr7 159345973 + 37849894 37850169 L1MA3 4352 + 4121 4352 63524 29 1 0 4 0 1 105 2 0 22 8 6 22 42 6 12 6 2 22 chain 13464 chr7 159345973 + 37891634 37891789 MER107 203 + 6 161 64367 155 chain 10561 chr7 159345973 + 37934999 37935147 MER2 342 + 145 294 69298 32 4 5 112 chain 37505 chr7 159345973 + 37954315 37954747 L1PA7 6471 + 6033 6465 36397 432 chain 3548 chr7 159345973 + 38040456 38040497 MER50 708 + 517 558 94865 41 chain 9544 chr7 159345973 + 38050158 38050645 LTR12C 1709 + 775 1541 71379 29 1 41 42 99 100 50 229 467 37 chain 28622 chr7 159345973 + 38089521 38089880 THE1A 353 + 0 353 43914 110 1 0 173 5 0 70 chain 66648 chr7 159345973 + 38118192 38119141 L1PA13 3608 + 2455 3414 24785 54 1 2 156 16 14 285 9 18 49 1 0 99 2 1 27 1 0 68 0 1 6 0 1 13 6 5 18 2 0 28 0 9 25 1 0 56 8 6 18 chain 5662 chr7 159345973 + 38149030 38149108 L1M1 2793 + 2228 2307 82500 65 1 2 12 chain 238132 chr7 159345973 + 38151766 38155122 L1PA13 3608 + 227 3548 8518 64 2 0 125 14 12 17 2 0 8 0 1 4 14 5 17 6 5 11 1 0 4 2 1 15 2 0 11 6 5 76 0 1 22 2 0 307 2 8 431 0 2 116 0 1 376 16 18 8 2 0 50 1 0 45 0 1 129 0 4 6 4 0 107 15 15 100 1 2 322 1 0 29 0 1 421 1 0 30 1 0 48 0 1 64 2 0 58 0 4 56 1 0 5 2 0 47 2 0 5 2 0 20 1 0 23 3 0 15 5 0 8 17 11 10 4 1 12 chain 8130 chr7 159345973 + 38164084 38164181 MER85 139 + 32 139 74563 58 0 10 39 chain 207648 chr7 159345973 + 38203045 38205333 L1P1 4361 + 1542 3829 9435 299 0 5 628 6 0 1355 chain 6540 chr7 159345973 + 38234772 38234887 MER75B 242 + 0 117 79195 29 3 5 18 13 13 52 chain 48996 chr7 159345973 + 38332242 38332799 LTR6B 557 + 0 557 29954 50 1 0 309 0 1 197 chain 36769 chr7 159345973 + 38354740 38355190 L1PA5 6144 + 5687 6136 36907 265 4 3 181 chain 37289 chr7 159345973 + 38363882 38364334 L1PA5 6144 + 5685 6136 36556 267 4 3 181 chain 28611 chr7 159345973 + 38396156 38396522 THE1B 368 + 0 368 43934 13 2 0 27 0 5 127 2 1 195 chain 122228 chr7 159345973 + 38487254 38488676 L1PA7 6471 + 5041 6466 15158 575 6 5 643 0 2 10 0 2 188 chain 7179 chr7 159345973 + 38555862 38555947 L1PA16 3655 + 3490 3575 77014 85 chain 95667 chr7 159345973 + 38566423 38567541 L1PA6 6164 + 5030 6159 18818 285 1 10 654 0 1 30 0 1 148 chain 19648 chr7 159345973 + 38610014 38610263 AluSp 311 + 60 311 56858 205 11 13 33 chain 31904 chr7 159345973 + 38633387 38633831 MLT2A1 477 + 0 477 40412 10 0 1 158 4 1 9 0 1 24 0 1 72 17 11 88 0 1 18 10 48 34 chain 148501 chr7 159345973 + 38649568 38651367 L1PA7 6471 + 4666 6465 12456 231 0 1 536 1 2 106 2 1 78 1 0 76 0 1 33 0 1 232 1 2 112 2 0 25 2 0 5 1 3 186 1 0 4 0 1 6 2 1 156 chain 4385 chr7 159345973 + 38672899 38672949 Tigger3b 1229 + 54 104 88972 50 chain 42158 chr7 159345973 + 38697109 38697565 L1PA3long 6157 + 5701 6157 33271 456 chain 224316 chr7 159345973 + 38886034 38888928 L1P2 5180 + 2 2895 8914 143 39 41 8 1 0 50 10 9 193 19 0 67 8 7 43 1 0 224 0 15 326 19 19 20 0 1 1025 0 2 11 0 2 110 2 1 75 5 6 495 chain 15204 chr7 159345973 + 38888928 38889118 L1PA7 6471 + 6281 6470 62037 26 0 1 151 2 0 11 chain 13387 chr7 159345973 + 38896440 38896654 MER30 238 + 0 238 64489 92 21 38 22 0 6 48 8 9 23 chain 132939 chr7 159345973 + 39025291 39026753 L1PA3long 6157 + 4688 6150 13746 1462 chain 5882 chr7 159345973 + 39170850 39170914 MER41B 635 + 486 550 81547 64 chain 18700 chr7 159345973 + 39183022 39183247 MER1B 344 + 42 267 57898 225 chain 51938 chr7 159345973 + 39194379 39195079 LTR12_ 688 + 0 688 28891 172 24 0 42 1 0 4 0 1 207 2 1 5 1 0 38 3 8 60 0 1 13 0 8 128 chain 267772 chr7 159345973 + 39274142 39277058 L1PA3long 6157 + 3236 6153 7769 1976 0 1 940 chain 112501 chr7 159345973 + 39297715 39299172 L1PA8 5853 + 4405 5853 16750 165 0 1 146 12 2 285 4 5 73 0 2 55 0 3 28 14 17 10 1 0 318 1 0 49 9 8 36 2 0 71 1 0 8 2 1 56 1 0 16 1 0 93 chain 3709 chr7 159345973 + 39324556 39324599 MLT1I 406 + 362 405 93548 43 chain 49149 chr7 159345973 + 39365098 39365712 L1PB1 5432 + 4029 4646 29884 138 4 0 50 5 6 173 0 6 144 1 0 75 0 1 24 chain 202774 chr7 159345973 + 39477593 39480325 L1PA7 6471 + 4038 6466 9611 74 0 3 370 318 0 189 0 4 276 1 0 242 0 4 423 0 5 70 4 5 175 0 1 394 15 15 32 0 1 137 4 0 8 chain 5111 chr7 159345973 + 39526879 39526956 MLT1F1 559 + 190 290 85105 43 8 31 26 chain 6959 chr7 159345973 + 39527033 39527135 L1PA8 5853 + 5703 5805 77744 37 2 1 16 4 3 6 0 2 37 chain 7023 chr7 159345973 + 39552777 39553126 MER21C 908 + 558 882 77514 17 166 150 27 19 17 59 43 36 18 chain 10787 chr7 159345973 + 39577872 39578061 LTR12C 1709 + 935 1171 68886 94 2 90 41 41 0 11 chain 5424 chr7 159345973 + 39578204 39578267 LTR12C 1709 + 650 713 83588 63 chain 59949 chr7 159345973 + 39692891 39693575 L1PA6 6164 + 5477 6162 26386 140 0 1 544 chain 15827 chr7 159345973 + 39702581 39703027 L1MA5A 2387 + 1963 2375 61249 18 17 18 32 4 3 24 13 12 16 29 33 36 2 0 19 10 8 36 3 0 15 16 0 44 54 40 12 1 0 11 1 0 21 0 2 12 chain 2788 chr7 159345973 + 39768014 39768071 MER8 282 + 179 235 101707 18 13 12 26 chain 110676 chr7 159345973 + 39842319 39843833 THE1D-int 1627 + 56 1627 16984 345 4 5 83 0 2 56 19 18 202 7 1 9 0 6 369 29 68 74 0 3 95 1 0 152 5 16 27 4 7 33 chain 39812 chr7 159345973 + 39891693 39892400 LTR8 732 + 0 717 34811 136 1 0 252 183 194 135 chain 37306 chr7 159345973 + 40035361 40035857 MER1A 529 + 48 521 36545 105 0 3 5 3 0 294 21 0 6 2 0 60 chain 5935 chr7 159345973 + 40107199 40107288 Tigger3d 321 + 0 82 81341 22 8 0 34 0 1 25 chain 14702 chr7 159345973 + 40150099 40150373 LTR8 732 + 260 565 62674 52 9 36 115 7 9 19 11 17 18 24 20 19 chain 59321 chr7 159345973 + 40218458 40219346 LTR12D 1347 + 405 1347 26560 118 25 0 12 2 33 125 1 18 17 42 1 10 25 0 246 0 97 265 chain 2657 chr7 159345973 + 40218758 40218800 LTR12D 1347 + 645 687 77745 42 chain 196076 chr7 159345973 + 40289470 40291650 L1PA4 6152 + 3954 6136 9842 927 3 4 593 0 1 657 chain 7572 chr7 159345973 + 40304820 40304919 L1PB 1623 + 763 856 75924 80 6 0 13 chain 198565 chr7 159345973 + 40363771 40367426 L1PA3long 6157 + 2521 6157 9756 940 18 0 2554 1 0 142 chain 215455 chr7 159345973 + 40389814 40392275 L1PA5 6144 + 3661 6125 9159 819 1 3 590 0 1 556 5 5 490 chain 3348 chr7 159345973 + 40392303 40392339 LTR13A 966 + 83 119 96618 36 chain 53027 chr7 159345973 + 40445121 40445751 L1PA5 6144 + 3104 3735 28565 404 14 15 212 chain 40237 chr7 159345973 + 40593894 40594335 L1PA2 6032 + 5588 6029 34486 441 chain 3094 chr7 159345973 + 40835059 40835094 MER3 215 - 5 40 98836 35 chain 28799 chr7 159345973 + 40896399 40896778 THE1C 375 + 0 375 43627 119 5 1 65 1 2 163 1 0 25 chain 40330 chr7 159345973 + 40897735 40898432 LTR12D 1347 + 588 1281 34425 61 0 2 48 14 7 149 31 34 103 29 9 18 4 0 30 38 35 37 16 8 96 0 33 23 chain 3952 chr7 159345973 + 41026182 41026232 MER45A 178 + 127 177 91753 50 chain 4705 chr7 159345973 + 41036621 41036686 MADE1 96 + 6 96 87232 11 0 25 54 chain 25142 chr7 159345973 + 41057541 41057905 THE1C 375 + 16 375 49051 105 13 10 48 0 2 5 23 19 170 chain 7587 chr7 159345973 + 41167525 41167749 MLT1A0 366 + 73 316 75897 34 118 137 72 chain 6244 chr7 159345973 + 41189950 41190049 MER45B 1037 + 216 316 80194 12 14 15 73 chain 30254 chr7 159345973 + 41364691 41365048 L1PA8A 6298 + 5316 5676 41802 173 0 3 184 chain 51776 chr7 159345973 + 41366388 41367069 L1PA8 5853 + 5173 5853 28946 208 0 2 181 1 0 44 2 0 6 0 4 61 24 22 39 2 1 19 1 0 93 chain 41920 chr7 159345973 + 41435023 41435608 LTR12_ 688 + 0 688 33415 77 26 1 43 0 25 21 3 2 83 6 7 162 0 103 164 chain 21714 chr7 159345973 + 41462445 41462705 AluY 311 + 52 310 54214 69 3 0 11 0 1 177 chain 13531 chr7 159345973 + 41479530 41479696 L1PA5 6144 + 5979 6138 64273 53 7 0 106 chain 8838 chr7 159345973 + 41487715 41487822 MER121 330 + 93 200 72898 107 chain 43166 chr7 159345973 + 41769961 41770507 L1PA8 5853 + 5312 5853 32675 166 1 0 49 0 2 35 1 0 44 2 0 74 1 0 6 6 5 47 2 1 112 chain 23390 chr7 159345973 + 41937042 41937410 THE1A 353 + 0 353 51779 110 1 0 45 6 0 37 4 3 38 6 9 7 3 0 50 13 5 44 0 1 4 chain 30870 chr7 159345973 + 41937411 41937776 THE1A-int 1579 + 1 370 41252 86 1 2 181 0 3 97 chain 16963 chr7 159345973 + 42055869 42056203 THE1B 368 + 0 368 59844 44 24 39 22 30 40 26 1 0 28 35 45 124 chain 7615 chr7 159345973 + 42112378 42112571 L1MA3 4352 + 4114 4303 75834 53 56 57 11 4 0 12 0 3 10 2 0 22 1 0 6 1 0 15 chain 4320 chr7 159345973 + 42188082 42188290 MLT1C 463 + 234 459 89362 30 133 150 33 0 1 4 1 0 7 chain 9735 chr7 159345973 + 42188558 42188730 L1MC1 2226 + 1780 1959 70966 60 5 4 9 0 9 23 14 8 21 1 0 20 0 6 19 chain 19668 chr7 159345973 + 42191418 42191656 AluSp 311 + 48 288 56833 178 0 2 60 chain 6025 chr7 159345973 + 42218414 42218491 MADE1 96 + 3 96 80986 42 1 17 34 chain 9005 chr7 159345973 + 42265124 42265401 MLT1A 405 + 28 382 72547 27 8 9 13 137 213 92 chain 22755 chr7 159345973 + 42382629 42382972 THE1B 368 + 18 365 52748 22 0 5 36 10 11 80 2 1 18 3 1 12 3 0 5 5 8 79 0 1 68 chain 3322 chr7 159345973 + 42411660 42411698 MER63B 433 + 340 378 96836 38 chain 330074 chr7 159345973 + 42528229 42533887 L1PA11 4918 + 8 4414 6214 5 2 0 22 9 7 36 2 0 6 2 1 10 0 1 19 1 0 14 2 0 51 1 0 33 2 0 5 2 1 103 2 0 421 0 1 12 0 1 42 0 1 89 1218 0 154 0 1 306 1 0 46 7 13 404 0 1 381 9 9 10 1 0 25 0 1 15 0 4 34 0 3 5 3 0 58 0 4 171 15 5 180 1 0 84 8 8 335 3 0 5 6 9 283 12 5 535 14 16 126 11 10 25 0 1 4 15 1 161 6 1 44 4 5 16 2 1 13 2 0 7 chain 64749 chr7 159345973 + 42529122 42530207 L1PA3long 6157 + 5081 6157 25209 207 15 0 135 0 1 580 1 6 147 chain 5148 chr7 159345973 + 42554474 42554549 MLT2B4 540 + 0 77 84917 16 3 5 56 chain 41589 chr7 159345973 + 42563367 42564112 L1PB1 5432 + 4721 5422 33631 15 0 1 105 0 1 87 9 3 32 1 0 138 3 0 14 10 1 20 8 6 12 2 0 3 2 0 9 2 0 25 0 4 23 2 1 16 2 1 43 40 27 18 28 23 21 1 0 22 1 0 12 1 0 18 chain 60215 chr7 159345973 + 42636329 42637107 HERVK9-int 4720 + 6 765 26316 17 25 13 13 13 9 66 1 0 8 1 0 30 1 0 147 1 0 220 0 1 235 chain 8779 chr7 159345973 + 42689140 42689252 MLT1A0 366 + 253 366 73039 84 0 1 28 chain 24088 chr7 159345973 + 42718454 42718804 THE1B 368 + 0 368 50664 13 7 11 20 0 15 109 1 0 4 14 14 108 1 0 21 0 1 52 chain 29175 chr7 159345973 + 42731193 42731571 THE1C 375 + 0 375 43091 122 3 0 71 3 4 152 1 0 26 chain 36453 chr7 159345973 + 42759208 42759709 MER75 514 + 4 514 37101 13 1 2 104 7 14 341 10 11 25 chain 2938 chr7 159345973 + 42769284 42769315 MER63A 208 + 177 208 100527 31 chain 238703 chr7 159345973 + 42786232 42788854 L1PA3long 6157 + 3520 6144 8499 1154 0 1 105 0 1 1363 chain 395402 chr7 159345973 + 42796954 42802226 L1PA8 5853 + 516 5736 5230 252 4 5 236 130 126 13 2 11 747 0 2 118 1 0 265 5 6 32 6 9 58 1 0 398 0 6 37 0 5 541 0 2 321 0 1 582 6 7 4 1 0 179 0 1 112 0 1 234 0 1 176 1 5 125 101 22 48 0 1 357 1 0 45 21 19 52 2 1 9 2 1 47 chain 250755 chr7 159345973 + 42807794 42812163 L1PB1 5432 + 1709 5423 8211 106 1 0 104 3 0 7 0 3 166 2 1 102 70 65 233 1 0 28 0 1 41 25 29 23 324 10 845 0 2 234 12 16 7 4 0 230 0 1 74 20 20 56 18 17 166 0 1 89 27 0 52 1 0 7 7 13 88 1 0 76 5 0 187 0 10 23 1 2 149 294 4 97 13 14 6 3 0 20 1 0 10 1 0 14 5 1 8 3 1 49 21 19 45 1 0 15 1 0 6 44 30 14 2 0 24 1 0 22 9 8 4 1 0 14 1 0 5 chain 4100 chr7 159345973 + 42878071 42878124 MER52A 1651 + 779 831 90776 11 1 0 41 chain 390049 chr7 159345973 + 42893838 42899613 L1PB1 5432 + 19 5430 5321 18 19 20 306 7 8 25 6 5 139 0 1 161 11 35 170 36 42 192 1 0 63 1 0 191 1 0 7 13 0 24 5 6 112 0 4 48 0 6 245 0 4 234 0 1 401 17 10 143 0 9 93 0 6 46 15 18 30 1 0 210 9 1 368 0 1 99 0 1 208 1 2 112 1 0 353 11 10 423 4 0 35 1 0 98 0 1 250 6 0 89 437 67 50 2 1 16 1 0 32 1 0 11 1 0 23 13 5 19 8 5 10 3 4 24 1 0 21 1 0 13 1 0 16 1 0 4 1 0 6 chain 15820 chr7 159345973 + 42920809 42921143 L1MA4 2864 + 2501 2801 61257 19 0 2 147 3 0 24 3 0 5 108 78 25 chain 36644 chr7 159345973 + 42947942 42948571 LTR24C 604 + 1 604 36987 46 2 1 47 1 16 33 1 0 31 1 0 3 19 0 147 2 3 27 0 5 11 53 38 18 4 0 101 6 5 57 5 0 14 chain 28038 chr7 159345973 + 42974601 42974995 LTR19B 566 + 0 566 44803 176 18 190 94 19 18 34 0 1 53 chain 16189 chr7 159345973 + 42979013 42979202 L1PB1 5432 + 4621 4812 60763 85 0 2 104 chain 21498 chr7 159345973 + 42979233 42979495 L1PB1 5432 + 4841 5103 54514 205 0 1 5 1 0 51 chain 5413 chr7 159345973 + 42979507 42979644 L1PB1 5432 + 5122 5253 83639 16 1 0 9 16 11 9 2 0 26 6 10 17 3 2 15 2 1 15 chain 51313 chr7 159345973 + 43048437 43049157 L1MA3 4352 + 22 740 29121 15 1 0 37 3 1 80 1 0 20 5 0 31 0 4 78 6 8 196 11 12 236 chain 553958 chr7 159345973 + 43059096 43065116 L1PA2 6032 + 3 6031 485 314 1 0 577 1 0 3642 0 9 1150 0 1 335 chain 45368 chr7 159345973 + 43073824 43074357 L1PA7 6471 + 5935 6469 31384 381 1 2 151 chain 8425 chr7 159345973 + 43087302 43087422 L1PB4 2604 + 2407 2528 73851 69 5 6 46 chain 8735 chr7 159345973 + 43096731 43096839 HY1 111 + 0 108 73130 108 chain 3775 chr7 159345973 + 43194421 43194461 U7 62 + 1 41 93022 40 chain 4500 chr7 159345973 + 43222007 43222062 MER5A1 166 + 87 142 88328 55 chain 2979 chr7 159345973 + 43265516 43265550 MADE2 80 + 40 74 100066 34 chain 50642 chr7 159345973 + 43340701 43341306 L1PA6 6164 + 5547 6151 29329 443 20 19 142 chain 52673 chr7 159345973 + 43390747 43391407 PABL_A 660 + 0 660 28675 61 6 1 6 0 5 54 1 0 151 0 1 381 chain 4221 chr7 159345973 + 43630131 43630182 MER58A 224 + 171 222 90003 51 chain 140936 chr7 159345973 + 43666894 43668941 HUERS-P3b-int 2065 + 13 1975 13031 81 3 0 194 0 1 5 80 20 115 0 1 36 0 3 113 11 10 12 1 5 27 0 3 44 10 6 50 1 0 34 0 1 54 2 1 17 5 4 68 0 1 301 0 1 106 0 3 39 6 0 19 1 2 17 0 1 63 1 0 44 29 2 82 0 2 13 1 0 25 1 0 89 3 1 73 2 0 8 0 1 9 4 1 16 0 11 36 4 0 58 1 0 33 chain 34472 chr7 159345973 + 43669213 43669761 LTR9B 643 + 0 561 38376 13 1 0 24 0 4 18 2 1 49 0 4 87 22 25 108 1 0 89 47 49 29 7 0 10 0 10 41 chain 92430 chr7 159345973 + 43672093 43673848 L1PA15 4387 + 2089 4350 19281 14 30 26 10 0 2 71 2 7 86 1 2 20 0 1 103 9 14 48 323 821 275 0 1 35 5 8 71 0 1 39 0 5 64 5 14 60 5 3 43 1 0 171 2 1 25 1 0 45 0 2 6 10 7 17 4 0 9 4 3 45 12 9 41 3 1 14 5 0 21 chain 15204 chr7 159345973 + 43676302 43676678 L1MA5A 2387 + 1947 2360 62038 48 0 1 37 1 0 36 2 0 38 1 0 10 39 45 6 0 2 5 2 0 6 1 0 34 7 65 13 64 41 6 1 0 15 0 1 4 chain 28526 chr7 159345973 + 43687842 43688196 THE1A 353 + 0 352 44077 110 1 0 92 1 0 150 chain 23144 chr7 159345973 + 43715790 43716133 THE1B 368 + 13 366 52156 34 0 1 63 6 22 11 0 1 24 31 24 100 1 0 73 chain 50522 chr7 159345973 + 43716569 43717398 THE1-int 844 + 1 826 29374 17 2 1 22 2 1 13 1 0 50 4 3 17 1 0 190 16 16 11 14 15 15 22 22 91 0 1 215 16 11 19 43 48 27 1 0 20 chain 37639 chr7 159345973 + 43810211 43810650 LTR10F 562 + 0 553 36312 122 0 115 202 1 0 114 chain 15771 chr7 159345973 + 43813263 43813534 LTR10F 562 + 1 368 61321 75 0 5 24 7 62 63 0 24 12 36 47 30 1 2 23 chain 16463 chr7 159345973 + 43813544 43813732 LTR10F 562 + 374 562 60430 188 chain 198089 chr7 159345973 + 43816735 43819475 HERVIP10FH-int 2884 + 149 2876 9773 59 1 0 5 6 0 184 13 1 117 0 5 69 0 2 11 0 5 20 1 0 94 0 1 485 1 0 173 14 8 11 1 0 7 1 0 56 12 8 118 7 216 246 3 2 198 1 0 24 1 0 129 1 2 5 1 0 111 1 0 117 1 0 66 2 1 50 1 0 17 1 0 13 11 5 34 207 23 8 2 0 16 2 0 5 chain 32185 chr7 159345973 + 43819534 43819976 LTR10F 562 + 0 562 40202 25 8 12 69 0 1 39 0 108 12 5 11 183 0 1 101 chain 203479 chr7 159345973 + 43820398 43823379 HERVIP10FH-int 2884 + 149 2866 9589 40 1 6 13 4 0 509 0 1 215 0 2 16 0 1 230 0 1 21 2 0 179 4 1 4 3 0 11 1 0 7 1 0 63 13 6 121 2 0 17 43 26 12 41 18 43 22 10 37 16 5 20 3 2 34 0 5 225 1 0 176 0 4 19 9 8 17 1 0 257 1 5 102 1 0 66 2 1 50 1 0 18 1 0 12 10 4 35 207 22 9 2 0 11 chain 36899 chr7 159345973 + 43823450 43823897 LTR10F 562 + 0 562 36817 116 0 115 331 chain 39592 chr7 159345973 + 43824512 43824972 LTR2 463 + 0 463 34962 203 0 1 45 0 1 118 0 1 94 chain 98381 chr7 159345973 + 43827111 43829464 HUERS-P1-int 2401 + 148 2139 18497 4 1 0 14 9 4 31 18 0 4 39 0 24 2 1 12 6 1 34 4 0 14 11 8 12 33 22 12 6 1 13 24 0 13 1 0 13 1 0 43 11 7 35 1 0 11 2 0 24 2 0 7 16 0 22 3 0 14 61 48 96 6 0 23 0 8 104 11 3 42 0 1 134 1 0 12 1 0 7 2 0 48 2 1 19 0 1 23 8 6 8 1 0 5 0 2 18 2 0 3 1 0 80 2 0 28 27 12 75 0 2 23 2 0 12 1 0 12 2 1 40 2 0 8 13 12 73 2 1 86 19 10 17 2 0 10 4 0 28 40 27 7 3 0 15 2 0 16 3 2 18 9 0 17 219 119 4 1 0 10 1 0 12 2 1 18 10 11 8 1 0 14 5 0 6 18 18 23 7 5 10 15 6 4 1 0 9 1 0 7 1 0 47 2 0 15 chain 43904 chr7 159345973 + 43832163 43832906 LTR8 732 + 0 732 32189 19 10 20 118 0 7 76 0 2 39 40 67 100 1 0 54 0 5 19 14 11 32 75 17 82 0 1 23 1 0 40 chain 106887 chr7 159345973 + 43857609 43859695 THE1B-int 1605 + 0 1605 17449 110 15 19 264 0 1 38 7 32 49 641 0 160 0 2 7 2 0 322 0 3 127 10 142 134 10 0 109 0 5 81 chain 11704 chr7 159345973 + 43966667 43966823 L1P5 443 + 192 353 67392 48 1 3 75 0 3 32 chain 77309 chr7 159345973 + 44020066 44021039 LTR13 1007 + 0 1007 22248 73 2 0 52 0 2 114 0 2 22 1 0 116 4 5 90 0 26 192 3 1 94 13 15 8 0 1 95 0 5 94 chain 21137 chr7 159345973 + 44120523 44120895 THE1D 372 + 0 372 54964 58 8 7 39 1 0 34 15 9 13 8 9 11 0 1 4 4 9 12 16 18 31 1 0 117 chain 35206 chr7 159345973 + 44200345 44200726 L1PA4 6152 + 5771 6152 37892 381 chain 6357 chr7 159345973 + 44373844 44373925 L1MB3 1562 + 1443 1524 79818 81 chain 479119 chr7 159345973 + 44419162 44425308 L1PA8 5853 + 50 5853 3655 21 2 0 12 1 0 9 52 16 70 0 1 121 20 8 255 10 11 25 0 4 30 0 6 10 7 0 86 1 0 482 1 0 17 1 2 236 0 1 411 311 0 134 9 0 203 1 0 53 0 4 58 7 36 505 7 5 52 0 4 282 0 1 104 8 0 117 0 3 889 1 0 439 0 1 232 0 2 76 0 2 259 4 0 219 1 0 44 2 0 71 1 0 6 8 0 8 1 8 39 2 1 19 1 0 93 chain 3394 chr7 159345973 + 44425984 44426022 tRNA-Ile-ATA 38 + 0 38 96128 38 chain 26561 chr7 159345973 + 44455775 44456054 AluYa5 310 + 31 310 46889 279 chain 8601 chr7 159345973 + 44457463 44457595 L1MB7 1623 + 34 167 73450 82 1 3 16 5 4 28 chain 3040 chr7 159345973 + 44530478 44530524 L1MB3 1562 + 1506 1551 99414 16 2 1 28 chain 10465 chr7 159345973 + 44546989 44547116 L1P3 4156 + 5 132 69475 127 chain 8614 chr7 159345973 + 44552730 44552895 LTR14B 630 + 235 452 73422 39 21 53 33 0 10 30 19 29 23 chain 12165 chr7 159345973 + 44586020 44586196 MER30 238 + 0 235 66540 15 8 39 46 0 25 27 0 6 41 3 0 36 chain 16076 chr7 159345973 + 44620643 44620866 MER30 238 + 0 238 60923 107 4 0 13 2 18 52 0 3 45 chain 4745 chr7 159345973 + 44650335 44650467 MIR 256 + 21 159 86985 14 30 32 49 3 4 12 13 16 11 chain 23199 chr7 159345973 + 44701771 44702087 AluSp 311 + 11 298 52083 42 29 0 245 chain 4222 chr7 159345973 + 44747666 44747767 L1MB3 1562 + 1268 1369 89988 30 34 35 17 1 0 19 chain 23064 chr7 159345973 + 44788950 44789226 AluSp 311 + 9 287 52267 12 0 2 75 0 1 26 1 0 162 chain 4530 chr7 159345973 + 44865776 44865870 MER65D 500 + 417 500 88166 25 17 10 18 1 0 21 3 0 9 chain 9740 chr7 159345973 + 44940911 44941047 L1MC2 1988 + 426 580 70957 23 6 23 11 0 1 96 chain 3038 chr7 159345973 + 44969034 44969066 MER5A1 166 + 43 75 99443 32 chain 24543 chr7 159345973 + 44988266 44988576 AluSp 311 + 0 302 49956 56 9 1 245 chain 6181 chr7 159345973 + 45049901 45049980 MER2 342 + 131 213 80418 53 0 3 26 chain 15202 chr7 159345973 + 45257781 45257989 L1PA8 5853 + 5648 5853 62040 30 2 1 61 2 1 19 2 1 92 chain 93896 chr7 159345973 + 45262318 45263391 MER11C 1089 + 1 1073 19057 568 1 0 504 chain 89081 chr7 159345973 + 45289034 45290250 MER4-int 2692 + 1433 2692 19844 32 2 3 127 0 1 156 0 1 4 0 1 4 0 1 4 1 0 118 5 4 116 0 1 12 2 0 135 0 12 37 0 1 8 10 15 37 6 9 12 10 0 175 4 3 51 2 0 48 4 37 94 chain 31454 chr7 159345973 + 45290258 45290711 MER4A1 472 + 0 472 40770 82 4 3 99 30 48 160 9 11 69 chain 7105 chr7 159345973 + 45291893 45292019 MER41B 635 + 510 635 77249 47 31 30 48 chain 536311 chr7 159345973 + 45315289 45321419 L1PA5 6144 + 0 6139 1549 750 10 11 474 0 1 1863 0 1 874 0 1 143 1 0 1004 0 1 171 1 5 697 0 1 142 chain 468046 chr7 159345973 + 45333256 45339008 L1PA8 5853 + 108 5853 3909 100 15 16 77 26 14 830 5 4 370 3 4 392 4 3 108 3 1 68 1 0 128 0 29 632 1 0 124 1 0 115 2 0 437 16 1 843 10 1 39 10 22 543 0 2 553 1 0 45 2 0 73 14 12 46 2 1 19 2 1 92 chain 89349 chr7 159345973 + 45439053 45440507 L1MA1 4479 + 2804 4190 19789 62 1 0 82 28 27 10 2 0 17 17 18 100 6 7 14 0 1 14 1 0 19 4 0 35 0 2 39 1 0 12 6 0 118 12 8 85 0 1 45 1 0 31 0 1 163 1 0 24 2 0 16 1 0 10 0 1 60 1 0 8 9 6 19 1 0 47 5 0 41 1 0 4 31 3 120 0 3 28 6 4 18 61 48 15 chain 14194 chr7 159345973 + 45545534 45545746 HERVL-int 5654 + 5363 5573 63326 64 1 8 104 15 6 28 chain 264936 chr7 159345973 + 45549394 45552506 HERVL-int 5654 + 2539 5654 7827 445 1 0 1110 0 1 477 0 1 653 0 1 207 0 1 63 2 1 22 0 1 132 chain 24909 chr7 159345973 + 45552506 45552820 MLT2A1 477 + 0 319 49416 141 1 2 26 1 5 145 chain 76393 chr7 159345973 + 45552823 45554049 L1PA15 4387 + 3136 4366 22466 32 2 0 234 0 1 87 16 15 67 27 40 109 8 18 74 2 8 6 4 0 6 0 1 55 11 9 35 2 1 61 0 1 4 3 4 95 7 6 26 4 3 51 1 0 16 0 2 9 12 5 19 0 2 57 6 7 12 9 1 14 5 0 26 1 0 11 chain 7192 chr7 159345973 + 45633276 45633374 Tigger2b_Pri 1066 + 0 97 76971 81 2 1 15 chain 44451 chr7 159345973 + 45693655 45694128 L1HS 6032 + 5559 6032 31855 473 chain 91449 chr7 159345973 + 45737146 45738202 L1PA6 6164 + 5093 6154 19428 488 0 4 423 0 1 145 chain 10195 chr7 159345973 + 45752617 45752823 MER47A 366 + 98 366 70024 73 1 2 42 39 94 21 13 19 17 chain 14466 chr7 159345973 + 45896930 45897207 L1PB1 5432 + 5168 5422 62942 51 1 0 17 1 0 43 2 1 12 28 16 18 13 10 10 2 0 24 1 0 22 1 0 12 1 0 18 chain 61854 chr7 159345973 + 45940124 45940877 LTR12 884 + 0 884 25905 134 0 133 109 2 0 508 chain 315498 chr7 159345973 + 46015294 46019482 L1PA8A 6298 + 101 6290 6493 18 19 10 19 1 0 9 5 19 13 2 0 13 55 28 5 1 0 8 1 0 9 10 5 9 2 0 36 7 6 20 2 0 7 2 0 13 9 6 53 2 0 14 3 1 11 5 3 74 1 0 48 9 0 324 0 2 206 3 1 10 0 8 27 0 1 85 3 2 195 0 1 483 3 1 462 6 8 134 10 9 58 0 4 637 1 2034 27 0 2 132 1 0 72 11 8 440 0 10 175 0 6 168 chain 34487 chr7 159345973 + 46116687 46117134 MLT2A1 477 + 0 477 38363 170 4 1 8 0 1 23 0 1 191 0 1 11 3 33 37 chain 176739 chr7 159345973 + 46141187 46143118 L1PA2 6032 + 3240 5173 10738 754 0 2 1177 chain 5153 chr7 159345973 + 46204985 46205056 MER57E1 380 + 0 85 84899 40 0 14 31 chain 45558 chr7 159345973 + 46223593 46224129 L1PA8A 6298 + 5752 6291 31281 409 0 3 127 chain 86234 chr7 159345973 + 46261267 46262288 MER11B 1079 + 0 1041 20381 312 5 22 49 0 1 386 1 3 268 chain 6853 chr7 159345973 + 46271190 46271282 MLT1B 390 + 255 349 78131 65 4 6 23 chain 146475 chr7 159345973 + 46306241 46308369 L1PB1 5432 + 3342 5420 12575 363 16 22 235 6 5 14 22 12 487 13 18 129 2 0 177 1 2 98 0 2 147 1 0 50 15 0 14 10 1 16 1 0 12 1 0 8 12 8 5 2 0 14 0 3 35 1 0 17 1 0 44 1 0 7 32 21 19 28 23 22 1 0 19 1 0 29 chain 3749 chr7 159345973 + 46414534 46414603 L1MA7 2200 + 2032 2089 93241 15 16 4 38 chain 32589 chr7 159345973 + 46415306 46415749 MER57A1 433 + 0 433 39879 288 5 0 71 11 5 33 0 1 35 chain 57364 chr7 159345973 + 46441737 46442448 L1PA7 6471 + 5759 6470 27138 378 0 1 159 2 0 8 14 15 150 chain 7601 chr7 159345973 + 46474265 46474355 L1PA10 4194 + 844 934 75867 90 chain 66116 chr7 159345973 + 46482238 46483027 L1PA7 6471 + 5670 6461 24933 269 0 1 380 0 1 140 chain 113503 chr7 159345973 + 46500002 46501473 L1PA7 6471 + 5022 6466 16613 452 8 15 146 1 0 5 0 2 7 36 0 59 7 8 7 0 1 566 20 21 148 2 0 7 chain 6953 chr7 159345973 + 46522823 46522907 MER41C 542 + 458 542 77763 84 chain 210388 chr7 159345973 + 46561986 46564567 L1PA7 6471 + 3800 6468 9342 22 6 5 190 0 3 7 0 1 4 1 0 139 0 2 644 0 1 401 0 35 368 7 9 79 1 0 68 0 4 102 0 12 42 0 27 282 17 19 147 0 1 54 chain 298980 chr7 159345973 + 46590756 46594696 L1P3 4156 + 31 4107 6862 204 48 55 30 1 0 61 12 9 11 3 0 8 7 0 61 1 0 103 14 11 155 6 11 60 0 65 366 7 26 284 1 0 180 2 3 111 1 2 246 0 1 150 0 55 253 8 6 5 0 2 488 0 1 159 17 21 6 4 0 260 1 0 46 0 4 24 0 1 112 4 1 143 1 0 276 chain 33477 chr7 159345973 + 46596523 46596945 L1PA7 6471 + 6038 6470 39109 286 0 10 136 chain 5103 chr7 159345973 + 46686818 46686879 L1MB1 2102 + 1660 1721 85148 61 chain 12402 chr7 159345973 + 46709140 46709324 MLT2B5 662 + 2 164 66136 62 22 0 100 chain 420414 chr7 159345973 + 46821178 46825657 L1HS 6032 + 1552 6031 4874 4479 chain 12507 chr7 159345973 + 46831086 46831413 L1PB1 5432 + 5125 5422 65979 17 4 2 12 18 12 52 30 28 33 1 0 15 7 4 13 9 0 13 24 20 24 1 0 23 1 0 11 1 0 18 chain 821 chr7 159345973 + 46873292 46873403 L1MC1 2226 + 1767 1872 67240 52 12 9 14 8 6 6 1 0 18 chain 82034 chr7 159345973 + 46873468 46874695 L1PB1 5432 + 4197 5404 21235 119 0 1 133 1 0 165 9 6 148 0 1 331 10 18 19 1 0 9 19 14 8 2 0 51 19 17 44 1 0 15 1 0 4 22 11 11 47 42 6 1 0 22 0 3 9 chain 1021 chr7 159345973 + 46874747 46874885 L1MC1 2226 + 1914 2047 67240 66 17 12 55 chain 54145 chr7 159345973 + 47009433 47010080 PABL_A 660 + 0 657 28174 84 5 14 125 1 2 432 chain 7937 chr7 159345973 + 47032272 47032373 LTR9B 643 + 461 561 75034 64 2 1 35 chain 18087 chr7 159345973 + 47149306 47149595 MER1B 344 + 0 336 58570 23 7 12 27 0 2 5 2 0 12 10 11 124 4 0 51 1 46 23 chain 18858 chr7 159345973 + 47158148 47158397 L1PA8 5853 + 5608 5853 57703 74 1 0 5 2 1 56 1 0 16 2 1 92 chain 534753 chr7 159345973 + 47159683 47165791 L1PA5 6144 + 0 6143 1632 13 6 5 13 0 1 495 0 1 105 0 1 202 0 9 201 9 0 8 0 9 1242 3 1 1376 1 0 1785 4 31 313 3 2 116 0 1 213 chain 122529 chr7 159345973 + 47176127 47177700 THE1B-int 1605 + 0 1598 15110 236 0 1 148 45 69 1144 chain 21483 chr7 159345973 + 47177707 47178046 THE1B 368 + 0 368 54533 44 11 29 40 0 1 62 1 0 22 34 45 125 chain 85770 chr7 159345973 + 47223062 47224112 MER11C 1089 + 0 1085 20491 225 0 5 32 5 8 49 1 18 253 8 9 178 0 9 299 chain 35569 chr7 159345973 + 47260937 47261431 L1PA15 4387 + 3508 4006 37673 95 2 0 9 8 21 5 0 2 175 2 0 12 4 0 52 0 1 10 2 0 23 1 0 20 1 0 73 chain 22960 chr7 159345973 + 47285284 47285609 THE1B 368 + 0 328 52425 169 1 0 29 0 3 8 1 5 16 1 0 12 1 0 63 2 0 5 1 2 16 chain 11858 chr7 159345973 + 47311268 47311398 L1PA5 6144 + 5997 6127 67098 130 chain 3960 chr7 159345973 + 47323294 47323365 L1MDa 1598 + 1080 1154 91692 22 11 14 38 chain 18012 chr7 159345973 + 47469355 47469691 L1PA16 3655 + 3046 3382 58643 75 26 27 56 1 0 24 8 9 17 0 2 5 3 1 28 2 0 43 19 20 29 chain 3912 chr7 159345973 + 47532508 47532593 MER52C 1267 + 881 1017 92035 27 8 48 16 11 22 23 chain 187945 chr7 159345973 + 47597335 47600024 HUERS-P2-int 2744 + 43 2734 10213 12 1 0 31 2 0 5 1 0 53 1 0 19 3 0 10 26 22 29 126 115 124 1 0 25 0 3 6 6 1 8 0 2 162 5 6 73 6 3 48 0 2 522 0 8 646 0 12 282 15 43 125 1 0 61 1 0 10 2 0 33 4 0 35 2 1 12 1 0 6 5 3 15 1 0 39 3 0 20 0 1 12 2 1 9 2 0 5 2 0 11 3 1 19 chain 53566 chr7 159345973 + 47603509 47604237 LTR12 884 + 0 861 28373 24 1 0 71 0 132 103 0 25 15 8 6 15 25 1 390 0 3 76 chain 117902 chr7 159345973 + 47628295 47629715 LTR12C 1709 + 0 1709 15899 437 0 1 23 18 18 94 6 5 72 0 278 184 9 6 106 0 4 357 0 10 114 chain 20802 chr7 159345973 + 47711181 47711437 AluSp 311 + 26 281 55355 251 1 0 4 chain 23974 chr7 159345973 + 47711438 47711725 AluSp 311 + 5 292 50832 287 chain 40379 chr7 159345973 + 47751671 47752189 LTR12 884 + 7 873 34399 18 1 0 249 0 113 159 0 103 42 0 133 49 chain 124936 chr7 159345973 + 47793633 47795158 THE1A-int 1579 + 0 1572 14717 283 0 1 22 1 2 42 2 0 599 0 3 23 0 45 547 1 0 5 chain 3042 chr7 159345973 + 47817257 47817291 MER63A 208 + 104 138 99407 34 chain 24040 chr7 159345973 + 47848527 47848821 AluSp 311 + 0 297 50744 52 5 9 216 1 0 20 chain 63488 chr7 159345973 + 47848833 47849758 L1PB2 3958 + 2694 3626 25527 44 1 13 172 1 0 127 9 8 121 0 1 127 2 0 67 4 0 26 0 1 33 37 43 63 3 0 26 6 5 46 1 0 9 chain 406119 chr7 159345973 + 47916603 47921863 L1PB1 5432 + 77 5277 5070 200 3 4 125 1 0 71 0 2 91 0 1 318 13 9 241 11 21 87 0 4 153 19 10 309 24 0 202 7 0 569 6 0 183 2 0 87 1 0 122 0 3 173 0 3 24 0 3 379 0 4 168 0 1 67 38 9 13 2 4 68 2 1 134 0 1 604 3 1 68 0 13 51 14 1 29 0 2 167 0 9 178 5 0 39 1 2 11 10 3 27 1 0 12 5 1 8 2 0 53 2 1 16 1 0 40 chain 123871 chr7 159345973 + 47921912 47923348 SVA_B 1603 + 10 1603 14869 12 0 11 480 0 1 187 2 1 4 0 1 130 0 65 39 2 1 8 0 77 141 0 4 431 chain 23225 chr7 159345973 + 47925497 47925801 MER4D1 891 + 0 328 52041 238 0 28 56 4 0 6 chain 4714 chr7 159345973 + 47946292 47946349 L1PA8 5853 + 5677 5733 87176 16 1 0 40 chain 144770 chr7 159345973 + 47958782 47960386 SVA_D 2077 + 0 2077 12709 25 5 0 736 0 40 116 0 37 44 0 403 667 2 0 9 chain 40991 chr7 159345973 + 47980713 47981189 L1PA6 6164 + 5689 6159 33977 460 6 0 10 chain 45782 chr7 159345973 + 47984852 47985365 MER9a2 513 + 0 513 31176 513 chain 78380 chr7 159345973 + 47989678 47990595 LTR5_Hs 974 + 0 930 22008 13 0 4 117 0 1 111 0 2 210 0 4 222 0 4 79 1 0 144 1 0 19 chain 156365 chr7 159345973 + 48019272 48021556 L1MA1 4479 + 1880 4155 11983 205 2 0 28 0 5 44 5 6 10 6 12 412 26 0 65 2 1 102 3 1 28 8 6 26 1 0 41 2 0 52 4 0 34 1 0 27 2 0 129 0 3 5 3 0 17 0 17 95 1 0 7 6 5 112 22 24 19 0 1 12 0 1 88 4 1 112 0 1 70 0 17 18 2 0 16 1 0 71 1 0 18 3 1 14 1 0 70 1 0 18 1 0 5 3 0 68 0 4 13 0 1 40 1 0 29 2 0 35 1 0 9 1 0 4 chain 38860 chr7 159345973 + 48048797 48049297 LTR19A 502 + 1 502 35462 46 1 0 11 0 1 252 1 2 189 chain 58896 chr7 159345973 + 48083792 48084878 MER4E1 777 + 0 766 26698 17 3 0 16 0 2 215 0 1 68 310 0 26 3 0 67 7 8 44 4 5 77 2 0 147 7 0 73 chain 43983 chr7 159345973 + 48120581 48121081 MER9a3 513 + 14 513 32138 240 5 4 255 chain 77840 chr7 159345973 + 48141268 48142304 HERVK22-int 3844 + 13 1041 22135 27 3 0 25 0 10 5 22 0 31 15 14 323 0 1 568 0 7 17 chain 54499 chr7 159345973 + 48145205 48145980 MER4E1 777 + 17 777 28044 120 0 1 51 1 0 40 0 1 16 0 1 103 7 6 182 21 14 21 16 8 73 4 1 98 0 2 22 chain 14055 chr7 159345973 + 48230952 48231171 L1PA8 5853 + 5638 5853 63511 32 24 15 10 0 7 42 1 0 16 1 0 93 chain 5867 chr7 159345973 + 48321182 48321306 MER20 218 + 96 216 81610 65 39 35 20 chain 64350 chr7 159345973 + 48614350 48615045 L1PA3long 6157 + 5462 6157 25339 695 chain 320987 chr7 159345973 + 48672995 48676798 L1PA6 6164 + 2320 6160 6388 5 0 2 23 4 5 44 0 14 765 11 12 1129 1 0 803 0 5 161 0 10 14 0 4 300 0 1 543 chain 469480 chr7 159345973 + 48684944 48732949 L1PA4 6152 + 0 6152 3874 708 0 1 330 0 1 1593 0 1 568 1 2 844 0 1 212 0 1 648 41865 0 1099 0 1 131 0 5 6 chain 199574 chr7 159345973 + 48729429 48731713 L1PA4 6152 + 2630 4909 9731 584 1 0 96 7 0 688 0 2 108 9 10 314 12 13 205 1 0 259 chain 6655 chr7 159345973 + 48756984 48757268 MLT2B1 522 + 80 389 78796 60 125 201 12 51 0 36 chain 20692 chr7 159345973 + 48786374 48786690 THE1B 368 + 0 349 55508 44 0 15 85 0 9 19 2 1 25 35 45 106 chain 28200 chr7 159345973 + 48828307 48828610 AluYa5 310 + 0 304 44563 31 0 1 272 chain 43173 chr7 159345973 + 48845626 48846136 MER9a1 513 + 2 508 32670 11 0 1 148 6 1 345 chain 78282 chr7 159345973 + 48884781 48885680 L1PA5 6144 + 2825 3723 22032 377 1 0 521 chain 3590 chr7 159345973 + 49029983 49030062 MADE1 96 - 0 96 94512 30 25 42 24 chain 44036 chr7 159345973 + 49083159 49083780 L1PA8 5853 + 5247 5853 32108 111 16 5 201 1 0 36 10 8 71 1 0 11 1 0 37 16 15 18 1 0 23 0 3 67 chain 3006 chr7 159345973 + 49097556 49097590 L1MA2 4263 + 3379 3413 99783 34 chain 29837 chr7 159345973 + 49101084 49101493 LTR7 482 + 0 482 42198 69 8 46 109 0 1 33 0 32 129 12 14 49 chain 89392 chr7 159345973 + 49117735 49118726 L1PA3long 6157 + 5165 6157 19776 974 0 1 17 chain 3418 chr7 159345973 + 49135953 49135993 LTR23 429 + 344 384 95915 40 chain 26522 chr7 159345973 + 49138959 49139244 AluYd8 298 + 0 285 46945 285 chain 38795 chr7 159345973 + 49157606 49158148 LTR12D 1347 + 665 1347 35503 20 2 44 24 1 0 78 14 13 75 6 7 59 0 97 247 0 2 16 chain 6998 chr7 159345973 + 49167892 49168051 MSTB1 431 + 273 419 77605 38 58 46 57 1 0 5 chain 24030 chr7 159345973 + 49184650 49185161 L1PA17 2846 + 2178 2693 50757 25 6 11 62 9 18 70 1 0 4 9 13 121 15 8 25 9 8 28 88 84 12 1 0 26 chain 3471 chr7 159345973 + 49319325 49319722 L1MD2 1676 + 722 1137 95445 19 201 222 38 122 119 17 chain 44268 chr7 159345973 + 49331303 49331935 L1PA8 5853 + 5243 5853 31973 154 8 0 17 0 1 94 11 3 52 10 9 36 2 0 68 3 2 14 1 0 47 17 16 4 1 0 93 chain 101461 chr7 159345973 + 49380310 49381955 MER61-int 3695 + 1622 3342 18134 42 3 4 28 4 7 35 24 97 195 0 1 101 1 0 82 4 7 300 0 1 92 3 1 139 11 16 57 134 129 15 77 76 16 3 2 87 3 0 18 0 2 63 1 0 107 chain 149355 chr7 159345973 + 49436019 49437822 L1PA7 6471 + 4638 6456 12398 81 5 6 288 0 1 106 1 0 84 1 0 4 0 1 405 1 0 7 1 0 48 0 1 142 0 12 312 5 6 170 0 2 142 chain 51330 chr7 159345973 + 49445876 49446540 LTR12_ 688 + 0 688 29107 121 0 25 195 10 12 187 5 2 146 chain 89853 chr7 159345973 + 49453514 49454771 LTR12C 1709 + 0 1690 19707 168 0 1 108 1 5 54 0 43 57 0 1 27 9 5 32 32 49 102 0 278 144 1 3 35 1 0 5 3 1 106 11 4 212 14 116 71 1 0 63 chain 26464 chr7 159345973 + 49481721 49482142 L1PA16 3655 + 3134 3542 47033 66 46 34 59 2 0 161 9 10 78 chain 9488 chr7 159345973 + 49537211 49537338 MER85 139 + 0 136 71499 20 2 1 69 0 10 36 chain 7987 chr7 159345973 + 49587812 49587991 L1MA3 4352 + 4163 4332 74908 72 4 0 18 27 25 4 1 0 5 1 0 23 6 5 13 1 0 4 chain 16173 chr7 159345973 + 49607927 49608233 L1PB1 5432 + 5001 5295 60783 70 15 15 10 12 13 5 3 0 20 1 0 12 1 0 10 2 0 3 2 0 9 3 1 50 1 0 17 1 0 34 0 1 9 1 0 15 chain 78537 chr7 159345973 + 49614471 49615433 LTR13A 966 + 0 966 21972 76 0 4 518 0 2 70 11 7 22 9 10 143 1 2 112 chain 41574 chr7 159345973 + 49642373 49642871 L1PA6 6164 + 5658 6156 33642 498 chain 549395 chr7 159345973 + 49649738 49655883 L1PA4 6152 + 0 6146 788 437 0 1 553 4 1 864 1 0 22 0 1 1286 0 1 343 1 0 217 0 1 213 0 1 2097 0 1 107 chain 59507 chr7 159345973 + 49665886 49666605 L1P1 4361 + 132 852 26507 60 1 2 56 0 1 323 1 0 278 chain 108121 chr7 159345973 + 49711072 49712483 LTR12C 1709 + 0 1709 17305 266 0 1 277 4 0 175 0 118 75 0 2 39 5 115 44 1 0 4 4 2 106 11 4 139 0 1 28 0 102 129 1 0 57 21 0 25 chain 41494 chr7 159345973 + 49717867 49718384 L1PA6 6164 + 5632 6158 33677 199 0 2 211 0 5 78 10 12 19 chain 36319 chr7 159345973 + 49737753 49738249 MLT2A2 560 + 0 506 37199 399 3 14 59 12 10 5 0 2 13 1 0 4 chain 3443 chr7 159345973 + 49811732 49811771 L1ME1 1623 + 1237 1276 95705 39 chain 56744 chr7 159345973 + 49933423 49934058 L1PA4 6152 + 5512 6152 27339 629 0 5 6 chain 53696 chr7 159345973 + 50015399 50016282 L1PA15 4387 + 3499 4366 28325 43 4 17 242 7 14 12 4 0 61 24 10 35 1 0 168 5 4 25 1 0 55 1 0 20 5 1 9 4 5 36 21 18 40 3 1 12 10 5 24 1 0 10 chain 526013 chr7 159345973 + 50040367 50047305 L1PA7 6471 + 0 6469 1999 123 16 0 8 0 16 19 1 2 83 43 51 774 0 1 133 0 4 83 19 0 47 0 1 160 6 7 176 1 2 193 1 0 130 1 0 39 0 8 458 0 4 15 513 1 100 1 2 184 1 11 182 5 8 424 2 0 163 1 0 201 0 4 181 0 5 66 0 10 597 0 4 944 3 5 691 1 0 149 chain 38299 chr7 159345973 + 50042896 50043402 MER9a3 513 + 0 513 35842 11 2 4 61 0 1 179 1 0 12 1 2 24 2 1 12 0 4 123 0 1 78 chain 45525 chr7 159345973 + 50056666 50057542 LTR19B 566 + 0 566 31297 170 1 2 57 310 0 247 4 3 33 0 1 21 1 0 32 chain 11932 chr7 159345973 + 50061641 50061785 LTR19B 566 + 0 144 66942 144 chain 261928 chr7 159345973 + 50073662 50077551 L1MA1 4479 + 249 4163 7912 29 2 0 80 5 4 56 0 2 147 0 4 59 0 21 79 1 2 54 0 4 205 0 11 82 21 28 177 14 16 198 1 0 168 6 5 251 2 0 13 11 9 6 0 1 10 8 12 58 0 5 125 0 4 19 1 5 398 1 0 71 2 1 100 9 7 21 30 13 56 2 1 57 0 1 34 1 0 27 2 0 15 0 2 55 10 13 85 41 47 61 4 0 94 1 0 24 1 0 5 4 0 13 4 5 115 2 0 34 1 0 162 1 0 24 33 30 57 1 0 19 2 0 11 6 5 49 4 8 26 1 0 8 1 0 4 3 1 37 0 1 4 1 0 75 7 6 27 3 0 8 0 1 20 8 7 8 0 1 11 chain 14284 chr7 159345973 + 50091405 50091576 L1PB1 5432 + 4234 4405 63212 171 chain 122288 chr7 159345973 + 50122239 50123567 L1PA3long 6157 + 4819 6147 15147 1328 chain 91576 chr7 159345973 + 50239756 50241131 L1PB2 3958 + 2382 3711 19398 35 0 1 65 2 0 6 33 11 216 4 5 191 30 17 72 0 1 194 0 2 6 3 4 71 7 9 21 15 13 39 1 0 16 11 6 56 2 0 11 5 1 89 1 0 78 1 0 63 2 1 29 chain 94274 chr7 159345973 + 50278842 50280048 L1PA8 5853 + 4657 5853 19003 129 0 1 219 1 0 4 1 0 554 1 0 36 11 8 71 18 16 45 2 1 19 1 0 23 1 0 70 chain 7619 chr7 159345973 + 50435390 50435482 U6 107 + 11 103 75827 92 chain 177267 chr7 159345973 + 50458925 50461057 SVA_D 2077 + 0 2070 10712 19 0 3 741 0 40 114 0 37 82 0 2 175 1 0 175 0 1 14 127 0 75 17 0 592 chain 1369 chr7 159345973 + 50460246 50460275 SVA_D 2077 + 1100 1129 39926 29 chain 4151 chr7 159345973 + 50460275 50460348 SVA_D 2077 + 1256 1329 36970 73 chain 1180 chr7 159345973 + 50460348 50460373 SVA_D 2077 + 1202 1227 39926 25 chain 13811 chr7 159345973 + 50506334 50506493 L1PA5 6144 + 5964 6124 63864 122 0 1 37 chain 393917 chr7 159345973 + 50514087 50519871 L1PB1 5432 + 60 5413 5250 341 1 0 11 1 0 181 0 1 45 90 0 170 1 9 179 5 11 68 0 1 318 1 0 7 23 0 7 0 5 117 6 10 62 0 6 721 25 26 65 7 6 73 2 0 28 2 1 60 2 0 5 0 2 295 0 3 26 19 24 287 6 0 68 0 1 398 1 7 14 6 2 15 1 2 28 0 1 42 313 0 147 1 0 205 0 1 53 1 0 402 13 9 81 2 1 103 3 4 247 0 1 40 15 11 24 1 0 9 16 11 9 2 0 10 0 4 39 2 1 16 1 0 44 1 0 15 3 0 7 15 5 19 8 5 14 6 4 20 1 0 15 8 6 13 1 0 9 chain 4199 chr7 159345973 + 50536614 50536701 MLT1D 503 + 380 443 90129 55 24 0 8 chain 7987 chr7 159345973 + 50576980 50577081 MER11B 1079 + 979 1079 74910 72 1 0 28 chain 4915 chr7 159345973 + 50578045 50578217 HERVK11-int 2540 + 773 905 86091 20 77 41 44 9 6 7 1 0 14 chain 31237 chr7 159345973 + 50578826 50579286 LTR7B 505 + 0 503 40942 94 11 21 69 6 13 28 3 27 26 0 2 38 0 1 43 1 0 26 0 1 52 14 13 49 chain 79365 chr7 159345973 + 50580887 50581980 HERVK11-int 2540 + 1197 2234 21771 18 22 11 27 12 1 36 21 1 102 1 0 337 5 0 88 1 0 17 1 0 183 13 12 74 10 5 125 chain 9176 chr7 159345973 + 50588189 50588308 L1MA4 2864 + 2575 2691 72172 100 3 0 16 chain 23561 chr7 159345973 + 50719383 50719690 L1PA8 5853 + 5553 5853 51490 11 1 0 44 2 0 70 2 1 61 2 1 10 1 0 9 1 0 93 chain 8548 chr7 159345973 + 50828861 50828998 MLT1A 405 + 221 356 73563 61 11 12 8 3 0 11 0 1 20 1 0 22 chain 5392 chr7 159345973 + 50831788 50831849 MER3 215 + 14 75 83733 61 chain 81903 chr7 159345973 + 50845127 50846169 MER11C 1089 + 4 1057 21263 246 0 1 62 0 4 69 1 0 146 60 63 93 0 4 12 1 0 33 0 1 319 chain 86724 chr7 159345973 + 50876941 50877894 L1PA3long 6157 + 5191 6144 20265 953 chain 16784 chr7 159345973 + 50877921 50878162 L1PA10 4194 + 3925 4161 60049 145 7 6 29 0 2 5 2 0 4 3 0 34 1 0 11 chain 466128 chr7 159345973 + 50886927 50892534 L1PA6 6164 + 70 6162 3960 166 0 2 24 2 1 87 6 5 163 0 2 47 1 0 18 5 1 206 17 0 15 0 17 371 8 9 44 0 1 1084 0 1 372 29 28 111 0 2 342 0 1 168 0 2 168 1 2 663 0 1 4 1 0 135 2 0 479 12 483 730 0 15 116 4 0 6 chain 556249 chr7 159345973 + 50898842 50904874 L1PA2 6032 + 0 6032 347 2240 0 1 846 1 0 2945 chain 6727 chr7 159345973 + 50994626 50994705 L1PA8 5853 + 5774 5853 78551 79 chain 28037 chr7 159345973 + 50996819 50997245 L1PA16 3655 + 3055 3473 44806 50 8 7 13 1 2 77 6 5 50 2 1 24 14 8 181 chain 23044 chr7 159345973 + 51018621 51018905 AluSp 311 + 11 296 52301 211 1 2 72 chain 280995 chr7 159345973 + 51164755 51168903 L1MA2 4263 + 4 4051 7394 18 2 1 81 33 35 23 2 0 12 15 43 26 12 11 18 0 1 69 17 32 51 0 3 27 11 18 10 1 0 121 1 0 21 0 5 239 0 1 268 0 1 261 0 2 5 1 0 9 0 3 75 0 1 56 3 7 319 11 14 5 2 0 74 1 0 125 1 0 89 8 9 225 0 1 106 5 7 8 1 0 13 0 4 87 1 0 148 6 21 98 0 1 156 6 11 109 0 10 123 0 1 264 4 0 5 204 0 70 1 0 148 3 0 60 0 1 86 13 9 25 0 11 50 chain 145263 chr7 159345973 + 51207402 51209064 SVA_D 2077 + 13 2077 12671 20 7 1 856 0 396 28 0 1 25 1 2 46 0 1 4 10 8 44 1 0 419 0 13 182 1 0 18 chain 5752 chr7 159345973 + 51242134 51242224 MER51A 677 + 176 257 82122 23 9 0 58 chain 43716 chr7 159345973 + 51286436 51287097 L1PA16 3655 + 2918 3578 32313 5 0 1 67 8 7 64 65 67 158 1 0 3 2 0 288 chain 6242 chr7 159345973 + 51295318 51295392 L1PA8 5853 + 5767 5841 80202 74 chain 2668 chr7 159345973 + 51370737 51370880 L1P4a 3072 + 298 441 102613 16 100 100 27 chain 58959 chr7 159345973 + 51447043 51447912 MER61-int 3695 + 1 3690 26677 21 0 1 27 1 0 49 4 0 9 0 1 89 39 0 61 9 2873 13 0 1 4 2 0 189 1 0 16 4 3 260 0 1 71 chain 59782 chr7 159345973 + 51604406 51605083 L1PA3long 6157 + 5485 6157 26436 358 5 0 314 chain 4251 chr7 159345973 + 51619089 51619141 L1MA7 2200 + 1882 1934 89813 52 chain 20973 chr7 159345973 + 51623087 51623447 THE1A 353 + 0 353 55169 33 6 21 55 2 1 89 2 0 5 0 1 4 1 0 5 4 0 10 28 20 57 10 3 49 chain 29349 chr7 159345973 + 51624213 51624524 AluYb9 318 + 0 310 42811 200 1 0 110 chain 10490 chr7 159345973 + 51650619 51650867 MSTB1 431 + 142 389 69435 38 4 0 12 10 13 8 0 1 39 23 25 33 42 39 39 chain 289778 chr7 159345973 + 51671137 51674585 L1PA4 6152 + 2415 5738 7133 77 5 6 23 1 2 161 91 0 778 40 0 188 0 3 285 2 1 245 1 0 133 2 0 321 0 5 683 2 1 4 0 1 406 chain 17901 chr7 159345973 + 51678178 51678392 L1PA6 6164 + 5950 6162 58756 60 0 1 141 3 0 10 chain 182398 chr7 159345973 + 51682019 51684028 L1PA3long 6157 + 4148 6157 10474 2009 chain 33486 chr7 159345973 + 51686666 51687098 L1PA7 6471 + 6036 6470 39098 100 5 6 51 8 10 82 1 0 185 chain 2940 chr7 159345973 + 51703770 51703804 MADE2 80 + 45 79 100501 34 chain 33492 chr7 159345973 + 51717354 51717842 MLT2A1 477 + 0 469 39094 142 0 1 26 0 4 212 73 49 35 chain 139683 chr7 159345973 + 51787714 51789247 L1PA3long 6157 + 4624 6157 13120 1533 chain 103677 chr7 159345973 + 51805653 51806871 LTR12C 1709 + 0 1709 17852 373 0 8 82 5 0 5 2 0 147 1 0 35 0 485 89 0 4 54 0 1 263 0 1 162 chain 46305 chr7 159345973 + 51817157 51817684 L1PA5 6144 + 3679 4206 30921 527 chain 55971 chr7 159345973 + 51845142 51846140 MER11A 1151 + 6 1147 27572 39 13 112 21 8 0 51 1 0 4 20 211 94 0 1 35 1 0 105 0 2 129 0 26 26 150 0 21 18 0 37 0 1 60 16 17 149 chain 42951 chr7 159345973 + 51869849 51870330 LTR7 482 + 0 482 32805 233 1 0 153 0 2 94 chain 128794 chr7 159345973 + 51870332 51872089 HERVH-int 3825 + 0 1617 14179 489 2 0 11 101 31 39 65 0 10 1 0 24 29 0 15 4 21 10 6 26 22 2 1 53 3 4 7 0 2 13 0 3 442 16 1 393 chain 3052 chr7 159345973 + 51870871 51870926 HERVH-int 3825 + 531 584 89299 39 1 0 10 1 0 4 chain 2860 chr7 159345973 + 51871006 51871038 HERVH-int 3825 + 538 570 101155 32 chain 27484 chr7 159345973 + 51873941 51874235 AluYa5 310 + 0 310 45599 52 0 16 242 chain 548283 chr7 159345973 + 51889909 51895941 L1PA2 6032 + 2 6031 846 916 1 0 203 1 0 157 0 5 957 0 1 328 1 0 1496 11 1 1116 0 4 845 chain 253788 chr7 159345973 + 51941316 51944479 L1P2 5180 + 3 3219 8140 109 14 13 16 0 11 95 1 0 150 4 8 103 9 7 82 0 4 117 2 1 16 0 1 4 4 3 42 3 18 130 0 25 17 0 1 464 1 0 781 1 2 954 8 6 36 chain 9233 chr7 159345973 + 52012789 52013019 MSTD 398 + 14 252 72046 101 79 97 17 16 6 17 chain 29986 chr7 159345973 + 52045229 52045685 L1PA8 5853 + 5358 5853 42065 34 0 34 138 1 0 41 5 3 54 1 2 11 28 26 39 2 1 19 1 0 38 0 11 44 chain 42032 chr7 159345973 + 52058029 52058535 L1PA7 6471 + 5526 6035 33339 95 0 3 411 chain 4438 chr7 159345973 + 52096712 52096915 L1MC1 2226 + 2008 2183 88672 34 114 88 6 1 0 13 7 6 28 chain 367111 chr7 159345973 + 52102421 52106632 L1PA5 6144 + 1919 6138 5709 387 1 0 857 0 1 120 0 1 214 3 4 169 0 1 211 0 1 413 7 6 935 0 4 389 1 0 245 8 11 84 1 0 4 0 1 58 1 0 103 chain 38941 chr7 159345973 + 52113280 52113737 LTR2 463 + 0 463 35402 54 0 3 311 0 1 72 0 2 20 chain 37573 chr7 159345973 + 52115615 52116082 MER4A1 472 + 0 472 36352 80 0 1 232 0 2 33 0 2 122 chain 28514 chr7 159345973 + 52185583 52186009 MLT2A1 477 + 0 469 44100 33 9 14 121 1 5 30 3 4 122 5 6 45 0 1 4 18 49 35 chain 12531 chr7 159345973 + 52191292 52191481 MER30 238 + 36 238 65927 58 23 39 57 3 0 48 chain 8160 chr7 159345973 + 52195524 52195631 L1MB3 1562 + 779 886 74504 22 2 0 6 0 2 77 chain 14759 chr7 159345973 + 52196983 52197181 MER30 238 + 26 238 62589 83 4 0 10 0 21 53 3 0 45 chain 50775 chr7 159345973 + 52272844 52273494 PABL_A 660 + 0 660 29289 84 0 9 18 10 9 158 7 0 42 0 5 262 0 4 69 chain 13196 chr7 159345973 + 52294907 52295354 LTR12 884 + 162 861 64788 34 1 26 37 25 0 15 3 45 59 210 420 63 chain 1996 chr7 159345973 + 52295081 52295129 LTR12 884 + 329 378 88613 7 1 2 40 chain 154908 chr7 159345973 + 52295395 52297269 HERV9-int 5642 + 0 1870 12062 358 1 2 435 1 0 251 3 0 61 7 3 408 0 3 349 chain 31181 chr7 159345973 + 52315289 52315675 L1PA7 6471 + 6085 6470 40991 72 0 4 77 16 11 221 chain 313936 chr7 159345973 + 52328871 52332882 L1PA5 6144 + 2451 6129 6534 385 330 4 175 14 0 187 1 0 51 0 4 189 1 0 59 1 3 984 0 1 264 0 1 536 2 0 177 0 4 157 1 0 497 chain 97497 chr7 159345973 + 52362556 52363859 LTR12C 1709 + 86 1709 18592 31 0 1 93 0 3 5 3 0 38 18 21 5 3 0 12 0 1 42 18 61 88 0 1 53 5 4 105 0 278 184 1 0 4 4 2 106 0 4 260 3 1 69 1 0 54 14 13 84 chain 249526 chr7 159345973 + 52387650 52391096 HERVL-int 5654 + 2500 5654 8253 286 0 1 503 6 0 48 0 21 475 7 8 526 10 9 260 0 1 790 5 1 157 319 14 54 chain 3798 chr7 159345973 + 52426278 52426326 L1MA4 2864 + 2746 2796 92857 23 0 2 25 chain 12576 chr7 159345973 + 52492257 52492517 MER47A 366 + 43 324 65836 17 62 65 7 0 5 9 0 12 35 8 9 122 chain 151051 chr7 159345973 + 52580781 52582548 L1PA7 6471 + 4693 6466 12284 540 0 1 331 12 5 52 0 8 241 1 0 265 0 1 285 0 4 40 chain 29789 chr7 159345973 + 52645571 52645899 L1PA4 6152 + 4320 4648 42247 328 chain 37062 chr7 159345973 + 52867117 52867868 L1PB2 3958 + 66 777 36700 18 5 0 16 104 96 29 7 4 102 1 0 4 9 11 73 8 4 11 0 1 66 77 52 94 1 4 126 chain 115704 chr7 159345973 + 52894060 52895334 L1PA3long 6157 + 4867 6142 16288 84 0 1 1190 chain 84054 chr7 159345973 + 52930448 52931387 L1PA3long 6157 + 5210 6157 20793 150 3 10 637 0 1 149 chain 21141 chr7 159345973 + 52943205 52943485 AluSc 308 + 8 287 54959 119 1 0 14 3 0 6 1 4 136 chain 53158 chr7 159345973 + 52956332 52957014 LTR30 714 + 0 714 28512 213 5 4 228 15 16 186 0 32 35 chain 22747 chr7 159345973 + 53004399 53004759 LTR12C 1709 + 769 1175 52762 68 1 0 206 15 56 13 38 44 19 chain 7304 chr7 159345973 + 53054583 53054706 L1MA6 2487 + 2159 2266 76650 68 21 5 34 chain 16008 chr7 159345973 + 53136052 53136302 THE1B 368 + 6 280 61017 38 0 15 110 1 0 29 35 45 37 chain 14200 chr7 159345973 + 53147749 53147945 MER107 203 + 0 203 63318 34 17 22 105 0 2 40 chain 3617 chr7 159345973 + 53149485 53149525 L1MC3 1789 + 427 467 94297 40 chain 23224 chr7 159345973 + 53176720 53176998 AluSc 308 + 30 308 52043 278 chain 44981 chr7 159345973 + 53216853 53217459 LTR12_ 688 + 0 663 31594 24 10 11 119 0 24 293 1 0 75 2 35 82 chain 6248 chr7 159345973 + 53222686 53222763 MADE1 96 + 2 96 80180 29 0 17 48 chain 117106 chr7 159345973 + 53234503 53235931 Harlequin-int 5206 + 1067 2513 16035 41 0 1 96 0 3 316 0 1 246 9 10 218 0 13 147 6 5 246 0 1 98 1 0 4 chain 11548 chr7 159345973 + 53297131 53297303 MER1A 529 + 356 529 67665 43 0 3 51 14 12 64 chain 22744 chr7 159345973 + 53330556 53330822 L1PA5 6144 + 3308 3575 52766 230 0 1 36 chain 17871 chr7 159345973 + 53333094 53333360 L1PA8 5853 + 5590 5853 58806 20 2 0 39 0 1 24 11 10 4 1 0 10 0 2 43 1 0 14 3 2 94 chain 32976 chr7 159345973 + 53343270 53343703 MER4A1 472 + 0 455 39534 204 19 41 210 chain 11743 chr7 159345973 + 53366057 53366196 U1 164 + 0 138 67321 23 1 0 115 chain 41385 chr7 159345973 + 53385758 53386290 MER41A 554 + 1 554 33742 92 0 1 295 0 25 21 5 0 119 chain 16502 chr7 159345973 + 53412115 53412448 L1PB1 5432 + 5114 5430 60369 20 1 0 10 1 0 14 5 1 9 12 10 42 2 1 15 1 0 43 2 1 16 8 12 19 2 0 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 14 1 0 8 1 0 4 chain 41863 chr7 159345973 + 53472493 53473026 MER41A 554 + 0 550 33449 161 1 3 224 0 15 147 chain 120759 chr7 159345973 + 53494839 53496260 LTR12C 1709 + 0 1709 15389 662 4 1 36 0 159 253 1 0 6 2 0 107 0 4 266 0 131 84 chain 254315 chr7 159345973 + 53575169 53579300 L1PB1 5432 + 18 5427 8126 9 17 0 112 0 4 146 0 1 24 32 1 86 2 0 127 19 17 92 0 4 698 0 1 56 8 11 214 324 1770 146 0 1 186 6 8 45 2 1 4 0 1 209 49 6 23 1 0 6 1 3 57 0 1 368 30 30 29 17 21 89 2 3 86 1 0 157 11 12 96 0 1 122 79 14 22 1 0 8 1 0 11 6 2 9 2 0 52 3 2 14 1 0 45 1 0 15 1 0 4 22 12 15 7 4 15 2 0 24 1 0 21 1 0 13 1 0 14 1 0 5 1 0 4 chain 36664 chr7 159345973 + 53619022 53619666 THE1C-int 1605 + 2 617 36975 15 1 3 89 2 0 6 2 56 100 13 10 109 0 2 39 100 25 56 8 0 4 0 1 100 chain 7419 chr7 159345973 + 53692914 53693240 L1MCb 1641 + 1261 1578 76345 26 159 148 59 49 51 33 chain 30751 chr7 159345973 + 53763317 53763708 L1PB1 5432 + 4438 4828 41349 186 3 0 82 0 2 120 chain 8716 chr7 159345973 + 53776148 53776254 U2 167 + 9 115 73177 106 chain 118300 chr7 159345973 + 53785013 53786345 L1PA5 6144 + 4810 6144 15833 484 3 5 845 chain 4152 chr7 159345973 + 53838691 53838737 THE1B 368 + 0 46 90454 46 chain 10126 chr7 159345973 + 53921141 53921673 LTR12D 1347 + 467 984 70155 68 110 183 55 269 181 30 chain 145332 chr7 159345973 + 53932427 53934253 L1PA8A 6298 + 4432 6288 12664 453 1 0 4 0 1 6 0 2 94 3 1 281 5 21 7 0 1 185 1 3 8 4 0 40 1 0 4 0 1 35 6 8 53 0 3 488 0 10 147 chain 467705 chr7 159345973 + 54218125 54224657 L1PA4 6152 + 0 5495 3915 343 15 14 35 0 1 850 0 1 172 0 5 1332 0 6 190 0 2 220 5 4 334 1 0 429 0 1 110 0 1 626 1057 0 333 1 8 291 1 0 187 chain 248521 chr7 159345973 + 54232493 54295841 L1PA4 6152 + 2265 6152 8279 906 1 0 606 59466 0 1524 6 8 658 1 0 174 0 5 6 chain 51584 chr7 159345973 + 54272633 54273234 L1PA4 6152 + 5540 6141 29002 601 chain 139137 chr7 159345973 + 54309912 54311467 L1PA4 6152 + 3787 5342 13172 1290 0 1 223 2 1 40 chain 6819 chr7 159345973 + 54359890 54359968 U13_ 108 + 0 78 78242 78 chain 133135 chr7 159345973 + 54443500 54445134 SVA_A 1864 + 18 1861 13732 511 17 17 76 3 0 99 30 27 129 2 0 8 1 0 102 2 221 37 2 0 359 0 1 256 chain 44248 chr7 159345973 + 54448838 54449351 MER9a1 513 + 2 513 31983 11 2 0 500 chain 393077 chr7 159345973 + 54450000 54454667 HERVK9-int 4720 + 36 4719 5264 14 7 4 4 1 0 66 1 0 7 10 9 22 1 0 2307 1 2 256 0 1 238 0 4 57 0 1 24 0 4 975 2 14 674 chain 42400 chr7 159345973 + 54454682 54455180 MER9a1 513 + 13 513 33129 206 0 2 292 chain 15405 chr7 159345973 + 54597971 54598173 MER107 203 + 6 203 61783 61 0 1 118 7 1 16 chain 7159 chr7 159345973 + 54621044 54621130 U6 107 + 20 106 77072 86 chain 89543 chr7 159345973 + 54630788 54632028 MER4-int 2692 + 1408 2676 19754 26 1 0 31 14 20 93 0 1 173 1 3 136 1 0 32 0 1 84 0 4 100 0 1 8 4 0 20 0 1 8 6 5 27 4 0 92 0 1 187 1 0 29 0 2 16 1 0 16 6 16 25 1 11 59 4 6 34 chain 9788 chr7 159345973 + 54678039 54678165 Tigger1 2417 + 2220 2345 70850 30 1 0 95 chain 44133 chr7 159345973 + 54678956 54679502 MER41A 554 + 8 554 32060 513 0 1 4 1 0 28 chain 7848 chr7 159345973 + 54684726 54684828 L1MA4A 3247 + 3006 3107 75261 33 1 0 68 chain 10400 chr7 159345973 + 54687889 54688040 MER2 342 + 89 246 69618 15 6 7 31 0 5 99 chain 102477 chr7 159345973 + 54736306 54737523 L1PA6 6164 + 4948 6161 18013 450 1 0 603 9 2 13 0 7 131 3 0 7 chain 34343 chr7 159345973 + 54740635 54741100 MER4A1 472 + 8 472 38458 180 16 12 11 0 1 188 3 5 67 chain 4379 chr7 159345973 + 54744155 54744207 MER4A1 472 + 420 472 89009 52 chain 66466 chr7 159345973 + 54775575 54776536 MER11C 1089 + 0 1063 24834 63 0 91 93 4 13 57 0 4 65 1 0 33 1 0 114 49 45 112 6 9 38 0 1 95 30 31 56 1 0 143 chain 22309 chr7 159345973 + 54791934 54792219 L1PREC2 3366 + 2462 2746 53398 254 5 4 26 chain 289401 chr7 159345973 + 54922255 54925641 L1PA6 6164 + 2742 6162 7146 27 0 5 411 2 1 79 0 3 416 3 13 748 1 2 148 0 1 53 10 15 183 0 3 816 0 7 489 chain 59305 chr7 159345973 + 54944932 54945630 L1PA7 6471 + 5759 6457 26566 698 chain 68739 chr7 159345973 + 54948335 54949101 L1PA4 6152 + 5379 6152 24276 185 0 7 581 chain 36337 chr7 159345973 + 55026409 55026866 LTR19A 502 + 1 457 37185 300 1 0 156 chain 34900 chr7 159345973 + 55267317 55267759 MER4A1 472 + 0 466 38093 15 0 2 4 0 1 8 1 0 46 1 0 4 0 1 151 0 21 208 0 1 4 chain 24136 chr7 159345973 + 55288079 55288446 MER57B1 401 + 2 395 50596 83 25 33 71 5 20 54 0 1 26 8 10 95 chain 4367 chr7 159345973 + 55295353 55295406 MER51C 639 + 1 54 89074 53 chain 88777 chr7 159345973 + 55311204 55312227 SVA_D 2077 + 17 1388 19894 204 0 6 497 0 3 35 4 1 69 1 2 82 1 38 32 1 0 17 0 305 80 chain 84386 chr7 159345973 + 55320929 55321988 L1PA11 4918 + 3425 4475 20737 237 1 0 34 3 0 429 25 26 180 10 5 57 2 1 81 chain 56063 chr7 159345973 + 55349433 55350189 MER4E 760 + 0 760 27544 23 1 2 145 1 0 12 1 0 151 6 6 16 1 0 4 0 1 9 15 17 46 1 0 99 6 10 219 chain 10640 chr7 159345973 + 55351156 55351295 MER41B 635 + 480 620 69149 100 1 2 38 chain 234999 chr7 159345973 + 55454202 55456952 L1PA7 6471 + 3711 6463 8601 775 9 1 177 1 2 152 0 4 50 0 2 81 1 0 659 0 3 81 0 2 437 1 0 326 chain 19802 chr7 159345973 + 55460933 55461373 L1PB1 5432 + 5053 5420 56675 53 1 0 7 41 1 24 1 0 8 1 0 10 9 5 6 2 0 11 1 0 41 3 2 15 1 0 24 0 1 19 1 0 16 3 0 6 16 6 19 3 1 4 1 0 14 2 0 13 0 8 7 9 0 17 1 0 13 1 0 16 chain 17090 chr7 159345973 + 55523420 55523799 MER65C 458 + 0 437 59713 49 0 2 10 0 2 5 1 0 4 1 2 12 0 24 36 54 83 37 1 0 13 3 0 29 1 0 59 40 46 24 chain 23048 chr7 159345973 + 55634377 55634694 L1PA7 6471 + 6179 6469 52295 245 27 0 45 chain 42607 chr7 159345973 + 55655271 55655826 L1PA10 4194 + 1641 2188 32997 126 35 21 44 0 4 291 0 2 59 chain 3056 chr7 159345973 + 55688040 55688077 L1MC4 1079 + 722 759 99243 37 chain 29070 chr7 159345973 + 55734059 55734429 THE1C 375 + 0 375 43233 135 0 4 41 0 1 194 chain 18535 chr7 159345973 + 55800091 55800342 L1MA3 4352 + 3791 4044 58065 46 0 1 16 0 3 5 8 6 176 chain 28533 chr7 159345973 + 55866296 55866604 AluYa5 310 + 0 305 44068 97 3 0 208 chain 75086 chr7 159345973 + 55868881 55869730 LTR12C 1709 + 810 1709 22823 27 1 0 234 0 47 106 0 4 73 1 0 39 0 1 368 chain 38417 chr7 159345973 + 55870519 55871148 L1PA11 4918 + 3942 4566 35777 180 17 18 44 0 5 142 6 5 56 10 17 66 2 0 10 4 3 20 4 0 9 8 3 10 13 9 14 2 1 12 chain 5252 chr7 159345973 + 55906151 55906215 LTR23 429 + 321 385 84434 64 chain 23111 chr7 159345973 + 55908926 55909220 AluSc5 308 + 0 303 52194 46 7 18 59 1 0 3 1 0 67 1 0 64 1 0 20 0 2 24 chain 5403 chr7 159345973 + 55920172 55920229 Tigger1 2417 + 1810 1867 83696 57 chain 6892 chr7 159345973 + 55930472 55930887 MER58A 224 + 47 209 77986 32 319 66 64 chain 29184 chr7 159345973 + 55932603 55932913 AluYb8 318 + 1 311 43075 310 chain 11717 chr7 159345973 + 55958667 55958817 L1PA7 6471 + 6140 6297 67368 38 0 3 45 7 11 60 chain 47989 chr7 159345973 + 55959780 55960368 L1PA8 5853 + 5255 5847 30302 309 1 0 44 2 0 13 0 2 59 1 0 5 1 9 43 3 2 19 1 0 87 chain 8189 chr7 159345973 + 56107990 56108196 L1PB1 5432 + 5237 5422 74436 42 41 30 17 26 20 24 1 0 22 1 0 12 1 0 14 1 0 4 chain 35596 chr7 159345973 + 56144892 56145377 MER9a2 513 + 0 505 37662 316 20 78 54 38 0 57 chain 307869 chr7 159345973 + 56146711 56152938 HERVK9-int 4720 + 54 4720 6664 4 1 0 9 0 1 56 1 0 5 4 3 30 1 0 1332 0 923 5 1 2 41 1 0 4 0 1 342 0 10 537 0 2 19 2 1 219 0 14 266 0 1 42 0 1 410 2509 0 386 chain 150535 chr7 159345973 + 56150056 56152547 SVA_D 2077 + 332 2077 12315 430 40 0 154 167 1 30 11 0 39 0 1 43 1 0 5 123 0 8 1 0 5 1 0 5 1 2 156 48 0 177 0 1 18 178 0 74 177 0 280 1 0 308 2 0 8 chain 5893 chr7 159345973 + 56150682 56150790 SVA_D 2077 + 917 1008 29427 19 8 1 10 10 0 61 chain 3973 chr7 159345973 + 56150795 56150847 SVA_D 2077 + 1130 1182 37066 52 chain 2510 chr7 159345973 + 56150976 56151022 SVA_D 2077 + 1136 1182 29427 46 chain 5884 chr7 159345973 + 56151022 56151099 SVA_D 2077 + 1309 1386 37066 77 chain 2619 chr7 159345973 + 56151276 56151324 SVA_D 2077 + 1338 1387 29427 8 0 1 40 chain 4693 chr7 159345973 + 56151519 56151605 SVA_D 2077 + 1456 1542 29427 86 chain 6477 chr7 159345973 + 56151605 56151697 SVA_D 2077 + 963 1055 37386 92 chain 8941 chr7 159345973 + 56151771 56151898 SVA_D 2077 + 1129 1256 37386 127 chain 2030 chr7 159345973 + 56151898 56151939 SVA_D 2077 + 1383 1423 39737 5 0 1 4 11 9 21 chain 43631 chr7 159345973 + 56152938 56153451 MER9a2 513 + 0 513 32366 19 3 2 215 0 1 276 chain 53351 chr7 159345973 + 56195705 56197125 MER4E1 777 + 29 767 28455 163 0 1 79 0 3 47 642 0 215 68 8 116 19 34 18 0 1 53 chain 33160 chr7 159345973 + 56217660 56218081 MER41A 554 + 0 424 39396 184 2 1 119 0 4 116 chain 91621 chr7 159345973 + 56264145 56265207 MER11C 1089 + 0 1073 19389 251 0 1 65 0 4 367 0 4 45 0 1 151 0 1 183 chain 40379 chr7 159345973 + 56316948 56317429 MER9a2 513 + 12 497 34400 144 2 3 79 0 1 215 0 2 41 chain 339968 chr7 159345973 + 56318221 56322268 HERVK9-int 4720 + 36 4720 6069 13 13 9 66 1 0 8 1 0 25 6 5 1185 0 3 11 0 1 223 0 2 463 1 0 601 9 649 9 2 0 330 1 0 595 6 9 90 1 0 387 chain 44245 chr7 159345973 + 56322268 56322781 MER9a2 513 + 0 513 31987 513 chain 41941 chr7 159345973 + 56400973 56401449 L1PA4 6152 + 5664 6140 33399 344 0 1 83 1 0 48 chain 6833 chr7 159345973 + 56474100 56474413 LTR42 492 + 130 447 78186 42 196 199 17 7 8 51 chain 558638 chr7 159345973 + 56584796 56590824 L1PA2 6032 + 1 6031 213 832 0 4 532 1 0 1718 1 0 2944 chain 4541 chr7 159345973 + 56673261 56673312 MADE1 96 + 45 96 88102 51 chain 4393 chr7 159345973 + 56744452 56744540 MADE1 96 - 0 96 88923 37 29 37 22 chain 20688 chr7 159345973 + 56756817 56757087 AluSp 311 + 21 296 55511 18 9 14 243 chain 6287 chr7 159345973 + 56767167 56767241 L1MA3 4352 + 3497 3571 80045 74 chain 29674 chr7 159345973 + 56928443 56928782 LTR14A 344 + 0 344 42404 37 0 5 302 chain 14390 chr7 159345973 + 56934520 56934707 Tigger1 2417 + 1291 1479 63047 53 5 6 129 chain 540730 chr7 159345973 + 57036531 57042548 L1PA3long 6157 + 1 6157 1298 7 3 0 145 0 1 553 0 1 68 0 128 876 1 0 1479 0 4 633 0 2 462 0 4 1282 0 1 9 0 1 495 0 1 4 chain 23443 chr7 159345973 + 57047561 57047846 AluSq10 312 + 9 293 51690 116 1 0 168 chain 90273 chr7 159345973 + 57068314 57069373 L1PA6 6164 + 5093 6162 19631 16 0 2 207 0 4 166 0 2 202 1 4 294 0 1 5 1 0 148 1 0 18 chain 4094 chr7 159345973 + 57107908 57107955 MADE1 96 + 45 92 90818 47 chain 7414 chr7 159345973 + 57176115 57176207 LTR43 600 + 458 552 76360 26 0 2 66 chain 189555 chr7 159345973 + 57253205 57255283 L1PA4 6152 + 4075 6152 10139 892 1 0 1185 chain 3917 chr7 159345973 + 57279739 57279782 MADE1 96 + 52 95 91999 43 chain 43397 chr7 159345973 + 57281726 57282269 MER41A 554 + 0 554 32511 142 0 9 167 0 1 111 9 10 114 chain 4680 chr7 159345973 + 57339774 57339851 MIR 256 + 24 106 87382 36 12 17 29 chain 43708 chr7 159345973 + 57368335 57368824 LTR2C 499 + 9 499 32317 431 0 1 58 chain 19779 chr7 159345973 + 57465722 57465945 L1PA3long 6157 + 5686 5909 56701 223 chain 21678 chr7 159345973 + 57465956 57466194 L1PA3long 6157 + 5918 6156 54259 238 chain 29991 chr7 159345973 + 57509132 57509449 AluYb8 318 + 1 318 42061 317 chain 105037 chr7 159345973 + 57539590 57540834 L1HS 6032 + 7 1260 17683 26 5 4 215 5 4 8 1 0 63 0 3 188 0 1 227 0 8 506 chain 16400 chr7 159345973 + 57665323 57665629 Tigger1 2417 + 1123 1773 60520 38 4 1 46 68 415 150 chain 157776 chr7 159345973 + 57674520 57676895 L1PA8 5853 + 3757 5848 11894 121 0 1 96 0 14 117 0 2 107 11 9 116 1 0 147 1 2 227 0 13 50 7 9 221 0 2 51 307 0 411 0 1 90 1 0 44 2 0 71 1 0 14 7 6 43 1 0 18 1 0 72 4 1 15 chain 14064 chr7 159345973 + 57713916 57714099 MER47A 366 + 133 316 63498 183 chain 7247 chr7 159345973 + 57786984 57787073 L1MB8 1703 + 1468 1557 76824 89 chain 2649 chr7 159345973 + 57858247 57858346 MER77B 728 + 471 575 102725 14 57 62 28 chain 122170 chr7 159345973 + 57945058 57946404 L1PA2 6032 + 4665 6017 15167 181 0 7 345 1 0 819 chain 14221 chr7 159345973 + 58022362 58022532 L1PA2 6032 + 5861 6029 63303 13 0 1 143 3 0 11 chain 181455 chr7 159345973 + 58091461 58093722 L1P1 4361 + 1 2272 10526 110 2 1 462 4 3 1362 3 15 318 chain 71707 chr7 159345973 + 60889344 60890173 L1PA3long 6157 + 4529 5359 23612 361 0 1 468 chain 3092 chr7 159345973 + 60891775 60891886 L1MB3 1562 + 1442 1552 98850 25 58 56 21 0 1 7 chain 58800 chr7 159345973 + 60902751 60903408 L1PA2 6032 + 4747 5404 26739 657 chain 514251 chr7 159345973 + 60960478 60966619 L1PA4 6152 + 1 6151 2556 116 2 1 462 1 0 43 0 1 1135 0 1 185 0 12 1214 1 0 2975 2 0 5 chain 58705 chr7 159345973 + 60978811 60979463 L1PA2 6032 + 4752 5404 26759 652 chain 91058 chr7 159345973 + 61266581 61268092 L1PA2 6032 + 4513 6018 19492 306 6 0 1199 chain 206740 chr7 159345973 + 61321414 61323881 L1PA4 6152 + 2876 5348 9478 283 0 1 5 0 1 42 0 1 473 1 0 291 0 1 1095 9 0 17 0 10 204 0 1 47 chain 54251 chr7 159345973 + 61587144 61587764 L1PA2 6032 + 5409 6029 28135 457 5 0 7 1 6 150 chain 17328 chr7 159345973 + 61589517 61589795 THE1B 368 + 6 309 59426 38 0 15 110 1 0 12 0 1 16 42 52 59 chain 31671 chr7 159345973 + 61600540 61600918 L1PA3long 6157 + 4106 4500 40608 213 2 1 98 0 17 65 chain 70202 chr7 159345973 + 61612298 61614316 L1PA2 6032 + 4005 6018 23949 814 6 0 436 0 1 762 chain 272237 chr7 159345973 + 61667636 61670901 L1PA4 6152 + 2876 6147 7652 283 0 1 5 0 1 42 0 1 473 1 0 291 0 1 1095 9 0 17 0 10 204 0 1 686 1 3 5 1 0 152 chain 19645 chr7 159345973 + 61696722 61696940 L1PA2 6032 + 5810 6032 56865 60 0 4 158 chain 126243 chr7 159345973 + 61722913 61724428 L1P1 4361 + 2830 4341 14516 1321 1 0 7 2 1 146 1 0 23 2 1 12 chain 278741 chr7 159345973 + 61729087 61732383 L1PA4 6152 + 2861 6152 7461 1804 1 0 1074 12 9 7 0 3 135 1 0 109 0 1 143 4 0 6 chain 31549 chr7 159345973 + 62029379 62029757 L1PA3long 6157 + 4106 4500 40704 213 2 1 98 0 17 65 chain 70536 chr7 159345973 + 62041138 62043156 L1PA2 6032 + 4005 6018 23858 814 6 0 436 0 1 762 chain 218747 chr7 159345973 + 62096288 62098920 L1PA4 6152 + 2876 5515 9074 283 0 1 5 0 1 42 0 1 473 1 0 291 0 1 323 0 2 770 9 0 17 0 10 204 0 1 214 chain 19767 chr7 159345973 + 62125368 62125586 L1PA2 6032 + 5810 6032 56716 60 0 4 158 chain 290371 chr7 159345973 + 62151568 62154888 L1PA3long 6157 + 2842 6153 7118 1329 2 1 443 11 6 357 0 1 201 4 0 973 chain 124226 chr7 159345973 + 62158648 62160137 L1P1 4361 + 2855 4341 14807 1295 1 0 155 1 0 23 2 1 12 chain 52626 chr7 159345973 + 62322193 62322810 L1PA2 6032 + 5409 6028 28692 463 6 7 130 0 1 18 chain 58701 chr7 159345973 + 62430230 62430885 L1PA2 6032 + 4749 5404 26760 655 chain 189569 chr7 159345973 + 62551826 62554025 L1PA3long 6157 + 3928 6143 10138 35 0 4 393 0 4 732 0 2 209 0 6 830 chain 123206 chr7 159345973 + 62587594 62588937 L1PA2 6032 + 4684 6027 14994 1343 chain 245791 chr7 159345973 + 62603534 62606320 L1PA3long 6157 + 2263 5053 8334 433 0 1 559 5 7 683 0 1 1106 chain 83737 chr7 159345973 + 62619211 62620211 LTR5A 1029 + 0 1029 20863 134 0 13 670 0 1 28 0 15 168 chain 242199 chr7 159345973 + 62639291 62642178 L1PA4 6152 + 2255 5188 8422 916 3 1 37 1 2 45 0 3 346 0 1 83 1 0 488 0 1 127 1 0 514 0 44 325 chain 503051 chr7 159345973 + 62666867 62673006 L1PA4 6152 + 7 6150 3029 500 12 12 512 4 3 60 0 1 271 0 1 166 0 1 785 0 1 876 0 1 489 0 3 520 5 1 112 0 1 163 0 1 273 0 1 335 0 1 29 1 0 4 0 1 168 1 2 491 6 0 25 0 1 315 0 1 16 chain 6500 chr7 159345973 + 62696801 62696882 L1PA4 6152 + 4494 4575 79346 81 chain 42085 chr7 159345973 + 62696882 62697367 L1PA4 6152 + 4576 5061 33298 485 chain 84699 chr7 159345973 + 62721022 62721994 L1PA3long 6157 + 5185 6157 20684 811 2 1 82 0 1 77 chain 68874 chr7 159345973 + 62800150 62800916 L1PA3long 6157 + 5381 6147 24241 766 chain 539190 chr7 159345973 + 62858907 62864926 L1PA2 6032 + 0 6017 1389 257 1 0 3021 0 1 288 1 0 1605 1 0 845 chain 326399 chr7 159345973 + 62900501 62904483 L1PA4 6152 + 633 5186 6276 39 5 15 322 1 2 131 0 2 62 2 1 4 0 1 183 9 0 10 1 10 25 1 0 201 0 1 781 0 557 527 0 1 1678 chain 45170 chr7 159345973 + 62970705 62971195 L1PA2 6032 + 4565 5055 31485 490 chain 89351 chr7 159345973 + 62971196 62972167 L1PA2 6032 + 5055 6027 19788 656 0 1 315 chain 340286 chr7 159345973 + 63060742 63064564 L1HS 6032 + 2 4346 6061 94 0 524 93 7 0 1542 0 2 617 0 1 318 0 1 711 0 1 440 chain 3886 chr7 159345973 + 63101722 63101801 MIRb 242 + 81 164 92237 44 23 27 12 chain 92555 chr7 159345973 + 63121864 63122907 L1PA3long 6157 + 5103 6156 19264 32 0 1 703 0 1 165 0 4 38 0 3 5 8 5 74 0 4 18 chain 16623 chr7 159345973 + 63131854 63132093 L1MA3 4352 + 49 282 60245 22 0 4 81 1 0 19 5 0 81 4 0 26 chain 24407 chr7 159345973 + 63209878 63210212 L1PA7 6471 + 6126 6461 50158 149 0 29 9 29 1 147 chain 88713 chr7 159345973 + 63241955 63243017 L1PA6 6164 + 5093 6162 19903 220 1 2 173 1 3 22 0 2 5 3 1 171 1 4 45 0 2 400 2 1 18 chain 4225 chr7 159345973 + 63279727 63279774 MADE1 96 + 45 92 89972 47 chain 67046 chr7 159345973 + 63321585 63322383 L1PA7 6471 + 5630 6429 24694 67 0 2 41 0 1 567 1 0 7 1 0 114 chain 49361 chr7 159345973 + 63325298 63325874 L1PA6 6164 + 5588 6162 29815 568 2 0 6 chain 309114 chr7 159345973 + 63407568 63411714 L1P3 4156 + 20 4139 6635 206 12 26 69 1 0 86 1 0 237 65 68 210 16 0 23 1 10 106 10 9 264 0 1 161 8 7 50 48 31 185 0 4 553 1 0 55 0 1 100 1 0 144 7 6 448 1 0 4 0 1 131 3 2 270 2 1 337 10 0 13 4 0 268 2 0 7 2 1 24 chain 316289 chr7 159345973 + 63468530 63472504 L1PA2 6032 + 888 6029 6479 30 1 0 616 450 1609 413 6 5 468 0 3 12 1 2 1147 0 3 172 0 3 658 chain 8837 chr7 159345973 + 63488831 63488988 Tigger4a 237 + 79 237 72904 20 7 5 39 6 8 26 6 0 7 0 7 46 chain 17311 chr7 159345973 + 63600776 63601014 L1MC 810 + 350 577 59441 7 11 0 220 chain 551098 chr7 159345973 + 63732464 63738593 L1PA3long 6157 + 6 6157 668 1675 0 2 525 0 4 114 1 0 4 0 1 61 0 4 1125 0 2 92 0 2 743 0 2 91 0 1 834 0 4 15 1 5 72 1 0 768 2 0 5 chain 42795 chr7 159345973 + 63784197 63785356 LTR71B 605 + 2 605 32891 124 15 27 188 569 0 154 4 5 105 chain 7320 chr7 159345973 + 63827553 63827656 MER41C 542 + 0 102 76601 44 7 6 52 chain 2732 chr7 159345973 + 63831198 63831286 MADE1 96 - 0 96 102104 37 29 37 22 chain 101365 chr7 159345973 + 63873966 63875158 SVA_D 2077 + 421 2071 18145 119 0 40 310 0 396 28 0 1 30 0 2 9 0 1 31 0 1 4 15 14 217 0 18 217 1 0 193 0 1 18 chain 4050 chr7 159345973 + 63928374 63928434 L1PB3 3668 + 3508 3566 91081 20 3 1 37 chain 469318 chr7 159345973 + 63941576 63947762 L1PA8 5853 + 52 5853 3878 19 2 0 8 65 29 68 324 0 126 21 9 152 0 1 132 9 13 110 4 5 161 27 26 13 0 1 946 1 0 145 5 0 871 0 1 90 0 4 246 4 0 471 1 4 204 0 2 306 4 1 118 1 0 200 0 3 37 0 2 141 0 1 214 0 1 72 12 5 113 11 9 432 1 0 43 7 1 71 1 0 13 1 0 50 1 0 18 1 0 93 chain 18063 chr7 159345973 + 64019868 64020090 THE1D-int 1627 + 17 239 58596 222 chain 22055 chr7 159345973 + 64053155 64053840 THE1B 368 + 0 368 53760 38 16 34 90 1 0 6 364 31 94 1 0 75 chain 5098 chr7 159345973 + 64067073 64067136 L1PA8 5853 + 5019 5082 85171 63 chain 37451 chr7 159345973 + 64067136 64067605 L1PA8 5853 + 5084 5562 36439 109 7 12 110 0 4 243 chain 10001 chr7 159345973 + 64067606 64067724 L1PA8 5853 + 5562 5678 70419 47 2 0 69 chain 3738 chr7 159345973 + 64067743 64067782 L1PA8 5853 + 5695 5734 93343 39 chain 7348 chr7 159345973 + 64067811 64067898 L1PA8 5853 + 5761 5848 76524 87 chain 20374 chr7 159345973 + 64092770 64093017 L1PA6 6164 + 5790 6039 55921 146 0 2 101 chain 5520 chr7 159345973 + 64093261 64093325 MSTB 430 + 56 120 83151 64 chain 92380 chr7 159345973 + 64136561 64137627 MER11C 1089 + 0 1079 19288 225 0 5 270 0 1 98 0 1 221 0 5 39 0 1 213 chain 513462 chr7 159345973 + 64160533 64166368 L1PA5 6144 + 3 5876 2601 1151 0 3 257 0 3 27 0 4 858 5 6 67 0 4 47 0 4 385 0 1 299 0 4 54 0 1 1164 0 8 792 0 5 144 0 4 163 4 0 418 chain 3876 chr7 159345973 + 64197921 64197966 MER41-int 2638 + 823 868 92314 45 chain 132670 chr7 159345973 + 64333631 64335295 L1PA8 5853 + 4179 5849 13761 19 0 4 13 9 7 118 0 1 323 2 0 232 0 2 107 5 7 73 0 2 106 10 13 375 8 0 28 2 0 70 1 0 61 2 1 19 1 0 58 0 9 22 chain 78947 chr7 159345973 + 64380853 64381895 MER11C 1089 + 0 1063 21885 146 0 6 36 0 1 57 0 9 60 1 5 61 1 0 4 1 0 147 38 40 19 6 4 95 0 4 5 1 0 38 7 8 30 1 0 288 chain 30562 chr7 159345973 + 64401723 64402111 MLT2A1 477 + 0 393 41514 142 1 2 24 1 5 220 chain 159799 chr7 159345973 + 64402218 64404254 HERVL-int 5654 + 0 2025 11766 24 0 5 682 0 3 53 17 8 67 5 6 34 6 7 29 0 1 417 22 12 440 4 0 213 5 6 18 chain 58856 chr7 159345973 + 64406485 64407141 L1PA4 6152 + 5495 6152 26718 543 0 1 113 chain 43610 chr7 159345973 + 64481701 64482239 MER41A 554 + 13 554 32375 220 0 3 318 chain 44546 chr7 159345973 + 64488225 64488772 MER41A 554 + 0 554 31806 230 0 3 172 0 4 145 chain 43224 chr7 159345973 + 64499325 64500185 LTR19B 566 + 0 566 32631 144 301 0 329 20 26 15 3 0 38 0 4 10 chain 230704 chr7 159345973 + 64531619 64535129 L1PB1 5432 + 2142 5404 8729 16 1 2 332 0 1 55 328 71 6 5 0 125 0 24 17 16 18 395 3 9 155 2 1 113 0 4 240 4 6 141 1 0 152 0 1 49 0 1 132 0 1 272 0 1 4 1 0 123 0 4 13 3 0 163 5 6 308 1 2 12 0 2 17 1 0 10 2 1 9 6 2 9 2 0 53 2 1 16 1 0 44 4 3 12 1 0 4 49 33 13 3 1 26 1 0 18 1 0 13 chain 122341 chr7 159345973 + 64553602 64555006 SVA_B 1603 + 4 1603 15137 14 1 35 701 0 40 22 0 40 79 0 41 38 1 0 17 0 40 59 1 0 63 0 4 400 2 0 6 chain 19308 chr7 159345973 + 64562250 64562508 MER57E3 465 + 129 384 57229 17 1 0 4 2 0 234 chain 112849 chr7 159345973 + 64576829 64578131 SVA_D 2077 + 0 2074 16693 4 0 1 8 5 0 12 5 0 176 1 0 77 0 1 246 7 47 163 0 741 598 chain 43191 chr7 159345973 + 64594807 64595300 LTR2C 499 + 0 499 32655 306 0 1 21 0 2 121 0 3 45 chain 213899 chr7 159345973 + 64660530 64663228 L1P2 5180 + 617 3334 9206 122 25 4 12 1 5 23 0 15 64 1 0 77 0 19 79 7 8 5 1 0 240 0 3 164 2 0 124 0 3 1626 1 0 124 chain 55064 chr7 159345973 + 64687549 64688257 LTR70 1284 + 33 755 27847 145 0 1 361 0 1 29 0 1 116 0 4 12 6 16 19 8 5 12 chain 137798 chr7 159345973 + 64717288 64718884 SVA_D 2077 + 6 2076 13281 26 7 0 535 0 40 157 0 40 112 1 38 37 0 2 10 17 196 17 0 1 7 0 1 6 0 176 34 0 4 4 0 1 626 chain 28240 chr7 159345973 + 64755929 64756347 LTR3B 427 + 0 411 44504 97 5 6 5 0 1 189 46 37 13 1 0 38 0 1 24 chain 22120 chr7 159345973 + 64761933 64762202 AluSp 311 + 28 298 53670 249 0 1 20 chain 140728 chr7 159345973 + 64784138 64785710 SVA_D 2077 + 62 2076 13043 835 0 415 33 1 2 41 0 1 67 0 17 392 0 8 203 chain 29842 chr7 159345973 + 64801828 64803015 PRIMA4_LTR 623 + 0 478 42193 97 774 0 91 4 0 20 0 14 91 6 0 7 3 64 94 chain 39348 chr7 159345973 + 64804076 64804538 LTR2 463 + 0 463 35115 61 0 3 300 1 0 77 1 0 22 chain 37254 chr7 159345973 + 64806855 64807323 MER9a2 513 + 0 513 36585 47 1 0 213 13 59 194 chain 8016 chr7 159345973 + 64807323 64807464 LTR70 1284 + 1145 1282 74849 6 2 0 4 0 1 37 1 0 43 17 16 24 1 0 6 chain 159632 chr7 159345973 + 64855549 64857669 SVA_F 1814 + 10 1814 11773 845 77 31 12 204 0 50 2 17 187 77 0 18 2 0 17 1 0 617 1 0 10 chain 3507 chr7 159345973 + 64856394 64856471 SVA_F 1814 + 905 999 44368 40 1 17 32 1 2 3 chain 6514 chr7 159345973 + 64856483 64856626 SVA_F 1814 + 1011 1155 44368 99 0 1 44 chain 3229 chr7 159345973 + 64856626 64856682 SVA_F 1814 + 1028 1084 62586 56 chain 3507 chr7 159345973 + 64856926 64857003 SVA_F 1814 + 1202 1278 44368 61 15 14 1 chain 33682 chr7 159345973 + 64863505 64863993 MER9a3 513 + 14 513 38942 8 0 1 77 14 15 49 2 1 93 0 17 17 21 13 129 1 2 77 chain 17464 chr7 159345973 + 64901691 64901897 AluSp 311 + 23 230 59279 185 0 1 21 chain 195032 chr7 159345973 + 64948006 64950297 HERVK9-int 4720 + 2430 4720 9890 620 0 4 242 12 7 1390 9 8 5 0 1 13 chain 37264 chr7 159345973 + 64950311 64950788 MER9a3 513 + 15 505 36578 105 0 1 81 4 16 38 1 0 177 2 3 69 chain 28739 chr7 159345973 + 64954830 64955129 AluYb8 318 + 10 309 43727 299 chain 10501 chr7 159345973 + 64963949 64964136 L1PB1 5432 + 5196 5414 69418 23 1 0 18 2 1 31 4 45 13 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 10 chain 7867 chr7 159345973 + 65018295 65018386 LTR71B 605 + 0 91 75212 91 chain 128977 chr7 159345973 + 65032922 65034371 SVA_C 1631 + 0 1618 14148 17 10 4 195 0 1 502 0 40 91 0 134 634 chain 7362 chr7 159345973 + 65244086 65244229 MER1B 344 + 106 245 76500 71 43 39 29 chain 84111 chr7 159345973 + 65257408 65258620 SVA_C 1631 + 40 1095 20777 12 0 8 306 0 1 97 77 0 373 50 0 28 34 0 6 3 1 38 7 11 15 31 28 38 2 0 5 2 1 13 1 0 74 chain 1805 chr7 159345973 + 65257825 65257900 SVA_C 1631 + 505 580 63815 75 chain 1622 chr7 159345973 + 65258279 65258323 SVA_C 1631 + 885 925 73558 25 7 3 12 chain 10846 chr7 159345973 + 65258668 65258830 SVA_E 1901 + 812 1046 32613 5 1 0 32 0 74 92 1 0 31 chain 102945 chr7 159345973 + 65258830 65260255 SVA_E 1901 + 669 1901 17959 49 93 4 10 0 3 30 148 41 6 1 0 5 1 0 26 1 0 84 4 0 9 1 2 18 6 0 11 0 12 922 chain 6226 chr7 159345973 + 65258879 65258972 SVA_E 1901 + 1095 1188 32613 93 chain 2611 chr7 159345973 + 65259012 65259051 SVA_E 1901 + 1228 1267 32613 39 chain 2571 chr7 159345973 + 65259069 65259107 SVA_E 1901 + 812 849 68080 5 1 0 32 chain 3386 chr7 159345973 + 65259107 65259160 SVA_E 1901 + 923 976 49869 53 chain 25865 chr7 159345973 + 65284353 65284696 L1PA11 4918 + 4065 4419 47918 131 0 10 59 0 4 63 1 0 60 3 2 12 1 0 13 chain 58159 chr7 159345973 + 65340589 65341216 L1PA2 6032 + 4896 5523 26915 627 chain 37162 chr7 159345973 + 65353782 65354212 L1PA5 6144 + 5708 6138 36636 430 chain 84351 chr7 159345973 + 65381999 65383221 LTR70 1284 + 11 1272 20743 243 0 4 285 0 2 133 3 12 98 3 0 5 7 10 16 41 53 184 46 48 51 0 1 35 0 10 35 1 0 36 chain 495123 chr7 159345973 + 65414792 65420484 L1PA4 6152 + 6 5740 3289 1014 1 0 445 0 42 48 1 0 700 0 2 761 2 0 195 0 1 78 1 0 390 0 1 271 0 2 123 4 0 86 27 28 158 0 4 814 1 0 209 1 0 362 chain 531034 chr7 159345973 + 65480283 65486432 L1PA4 6152 + 6 6152 1788 878 1 2 154 1 0 121 0 3 974 20 5 878 2 0 591 0 2 315 0 1 331 0 3 374 0 5 16 0 1 980 0 1 52 4 5 447 3 0 7 chain 3249 chr7 159345973 + 65518561 65518598 MLT1A0 366 + 113 150 97494 37 chain 50333 chr7 159345973 + 65520965 65521568 L1PA7 6471 + 5865 6464 29438 411 14 11 165 1 0 12 chain 20514 chr7 159345973 + 65533736 65534059 L1M2c 2366 + 1622 1931 55771 124 7 9 63 4 0 30 1 0 52 11 7 11 1 0 1 6 0 12 chain 96174 chr7 159345973 + 65536132 65537274 L1PA7 6471 + 5321 6456 18756 118 1 2 183 9 1 831 chain 18724 chr7 159345973 + 65586956 65587234 THE1B 368 + 6 309 57874 38 0 15 110 1 0 30 33 44 66 chain 14390 chr7 159345973 + 65622962 65623201 L1PA8 5853 + 5617 5853 63045 58 42 41 24 2 1 19 1 0 93 chain 75390 chr7 159345973 + 65628995 65629811 L1PA3long 6157 + 5340 6157 22747 704 0 1 112 chain 2845 chr7 159345973 + 65814376 65814434 MER8 282 + 209 260 101273 26 17 10 15 chain 27678 chr7 159345973 + 65827791 65828158 MER1A 529 + 124 493 45354 170 16 18 181 chain 7867 chr7 159345973 + 65854714 65854805 LTR71B 605 + 0 91 75211 91 chain 21756 chr7 159345973 + 65926488 65926903 L1PB3 3668 + 3233 3613 54162 58 1 0 17 5 1 82 2 1 57 4 3 26 20 4 19 8 6 21 3 1 37 7 3 12 2 1 13 7 4 14 chain 8156 chr7 159345973 + 65988983 65989105 MER4A 717 + 0 121 74508 27 1 0 4 1 2 55 2 0 18 0 1 14 chain 1691 chr7 159345973 + 65992377 65992559 LTR15 485 + 0 184 38649 81 0 2 101 chain 183217 chr7 159345973 + 65993411 65995431 L1PA5 6144 + 3696 5716 10427 2020 chain 5565 chr7 159345973 + 65995446 65996045 LTR15 485 + 184 477 38649 169 306 0 124 chain 23578 chr7 159345973 + 66013411 66013704 AluSq2 311 + 6 298 51463 278 1 0 14 chain 2940 chr7 159345973 + 66020455 66020489 L1MB3 1562 + 29 63 100499 34 chain 10524 chr7 159345973 + 66040228 66040358 MER2 342 + 192 322 69370 130 chain 18885 chr7 159345973 + 66056156 66056382 Tigger1 2417 + 584 810 57656 226 chain 9409 chr7 159345973 + 66102099 66102224 Tigger1 2417 + 2084 2205 71679 106 4 0 15 chain 3606 chr7 159345973 + 66118729 66118769 MER21A 919 + 11 51 94374 40 chain 5000 chr7 159345973 + 66155464 66155535 L1MA3 4352 + 4112 4186 85657 59 1 4 11 chain 3535 chr7 159345973 + 66156828 66156867 LTR35 598 + 149 188 94973 39 chain 11311 chr7 159345973 + 66180111 66180244 AluSp 311 + 159 292 68065 133 chain 14557 chr7 159345973 + 66236522 66236735 MER4A1 472 + 239 453 62839 106 6 6 50 7 8 44 chain 19024 chr7 159345973 + 66386953 66387193 AluSp 311 + 74 311 57524 57 1 0 172 2 0 8 chain 30929 chr7 159345973 + 66431806 66432142 L1PA2 6032 + 5696 6032 41193 336 chain 27768 chr7 159345973 + 66592696 66593093 LTR7 482 + 0 474 45229 101 13 63 60 5 37 44 0 1 80 12 6 82 chain 45257 chr7 159345973 + 66594014 66594536 MER9a2 513 + 0 513 31444 172 8 0 152 1 0 189 chain 120980 chr7 159345973 + 66614054 66615494 SVA_C 1631 + 0 1619 15350 17 0 18 161 0 1 449 3 0 30 0 77 64 20 108 77 1 0 16 6 5 354 0 1 61 2 1 179 chain 22675 chr7 159345973 + 66621725 66621987 AluY 311 + 40 301 52858 93 1 0 168 chain 4043 chr7 159345973 + 66660590 66660637 AluSq10 312 + 240 290 91137 38 0 3 9 chain 37448 chr7 159345973 + 66662971 66663403 MER9a1 513 + 81 513 36443 432 chain 3419 chr7 159345973 + 66806177 66806387 Arthur1C 363 + 105 337 95912 26 8 24 17 136 142 23 chain 2845 chr7 159345973 + 66890891 66890949 MER8 282 + 209 260 101272 26 17 10 15 chain 7956 chr7 159345973 + 66926237 66926338 L1MA7 2200 + 1241 1342 74987 101 chain 24766 chr7 159345973 + 66989267 66989547 AluSp 311 + 4 284 49636 280 chain 2720 chr7 159345973 + 67006749 67006778 MSTA 426 + 396 425 102186 29 chain 2670 chr7 159345973 + 67064074 67064135 L1MD 993 + 405 467 102601 18 21 22 22 chain 49217 chr7 159345973 + 67075813 67076406 LTR10C 591 + 0 591 29858 34 2 0 557 chain 18545 chr7 159345973 + 67085210 67085589 THE1D 372 + 0 363 58054 15 10 9 27 59 44 68 35 37 24 1 0 87 1 0 52 chain 3526 chr7 159345973 + 67151751 67151790 MER58A 224 + 47 86 95059 39 chain 25436 chr7 159345973 + 67208412 67208709 AluSx4 309 + 3 300 48576 297 chain 25506 chr7 159345973 + 67266038 67266491 MER4D1 891 + 0 450 48477 41 0 1 6 2 0 5 24 15 20 64 72 19 1 0 9 0 2 224 1 0 16 1 0 20 chain 40492 chr7 159345973 + 67344814 67345370 MER61E 571 + 0 564 34313 15 8 12 231 0 1 42 2 0 22 1 0 75 9 11 21 0 3 97 0 1 33 chain 4490 chr7 159345973 + 67375570 67375627 MLT1D 503 + 437 494 88394 57 chain 30237 chr7 159345973 + 67410998 67411778 MLT2A2 560 + 0 560 41816 169 12 11 14 365 38 63 0 98 9 0 11 92 2 1 54 chain 26204 chr7 159345973 + 67431619 67431977 L1PA8 5853 + 5501 5853 47409 61 1 0 41 4 8 68 1 0 9 1 0 36 0 1 18 8 0 17 1 0 86 0 1 6 chain 4339 chr7 159345973 + 67442878 67442931 MSTC 436 + 381 434 89235 53 chain 23899 chr7 159345973 + 67490413 67490827 MSTA 426 + 0 421 50945 130 24 22 49 40 44 35 21 22 90 0 4 25 chain 14113 chr7 159345973 + 67494482 67494676 MER30 238 + 36 238 63432 69 8 18 5 2 0 110 chain 44376 chr7 159345973 + 67516823 67517362 MER41A 554 + 13 554 31897 295 0 1 98 0 1 146 chain 35055 chr7 159345973 + 67519859 67520381 MER4D 903 + 387 903 37982 24 2 1 177 0 1 73 55 50 182 1 0 8 chain 43247 chr7 159345973 + 67521213 67521745 MER41A 554 + 21 554 32614 18 0 1 514 chain 39565 chr7 159345973 + 67524984 67525459 LTR2 463 + 0 463 34983 174 18 6 283 chain 4315 chr7 159345973 + 67553145 67553222 MADE1 96 + 0 91 89395 20 17 31 40 chain 39738 chr7 159345973 + 67561775 67562289 MER41C 542 + 10 542 34866 39 0 1 181 0 3 77 6 7 93 5 1 15 3 20 95 chain 7629 chr7 159345973 + 67573743 67573858 LTR19B 566 + 440 556 75802 73 10 11 32 chain 15793 chr7 159345973 + 67573940 67574155 L1PA8 5853 + 5636 5848 61293 43 1 0 14 7 6 45 1 0 16 1 0 55 0 1 32 chain 37655 chr7 159345973 + 67574174 67574677 LTR19B 566 + 64 566 36302 96 19 13 184 2 1 10 0 1 144 0 1 33 0 4 15 chain 44967 chr7 159345973 + 67584508 67585057 MER41A 554 + 0 554 31600 43 0 4 492 1 2 13 chain 24644 chr7 159345973 + 67640810 67641170 THE1B 368 + 0 368 49807 168 1 0 30 35 45 68 2 1 56 chain 38099 chr7 159345973 + 67718410 67718881 MER4A1 472 + 0 472 35989 379 0 1 92 chain 41608 chr7 159345973 + 67720142 67720763 MER41B 635 + 0 635 33620 118 11 12 256 1 7 61 27 28 42 37 43 68 chain 57897 chr7 159345973 + 67722746 67723486 MER4E1 777 + 0 760 27000 155 13 20 17 0 1 123 0 2 120 0 5 99 13 14 52 0 4 148 chain 47081 chr7 159345973 + 67724525 67725140 PABL_B 668 + 5 643 30619 13 0 25 194 1 0 44 1 0 69 2 1 285 0 1 6 chain 4422 chr7 159345973 + 67755518 67755585 Tigger3b 1229 + 224 290 88778 29 5 4 33 chain 9432 chr7 159345973 + 67780514 67780641 L1PA11 4918 + 4365 4487 71630 30 1 0 12 2 0 67 2 0 13 chain 10411 chr7 159345973 + 67799168 67799310 MER30B 195 + 22 189 69591 71 0 20 26 0 1 6 1 4 29 0 1 9 chain 43198 chr7 159345973 + 67800728 67801224 L1PA7 6471 + 5968 6464 32649 496 chain 9719 chr7 159345973 + 67827367 67827490 MER50 708 + 563 686 71006 6 0 1 59 1 0 57 chain 10988 chr7 159345973 + 67838608 67838732 AluSp 311 + 62 186 68569 124 chain 3697 chr7 159345973 + 67869503 67869567 MER58B 340 + 265 330 93627 16 8 9 40 chain 22630 chr7 159345973 + 67882051 67882341 AluSp 311 + 5 292 52939 144 2 1 134 2 0 8 chain 45005 chr7 159345973 + 67914271 67914823 MER41A 554 + 0 554 31583 211 5 6 210 0 1 126 chain 9285 chr7 159345973 + 67929677 67929899 MER30 238 + 0 235 71944 15 0 40 9 45 4 5 0 1 33 3 0 12 15 34 36 4 1 45 chain 37954 chr7 159345973 + 67937972 67938469 LTR3B_ 500 + 0 497 36107 78 1 0 72 0 1 4 8 7 135 1 3 8 3 0 98 1 3 88 chain 60956 chr7 159345973 + 67968791 67969565 LTR12 884 + 0 869 26123 25 1 0 230 0 91 32 2 0 370 0 8 14 1 0 99 chain 8839 chr7 159345973 + 68042212 68042314 MLT2A2 560 + 3 105 72894 102 chain 40923 chr7 159345973 + 68043559 68044118 MLT2A2 560 + 0 560 34015 191 39 36 258 0 3 17 0 1 54 chain 4295 chr7 159345973 + 68062094 68062155 LTR56 451 + 20 80 89540 13 2 1 46 chain 13817 chr7 159345973 + 68062525 68062699 L1PA16 3655 + 3423 3594 63851 153 3 0 18 chain 73676 chr7 159345973 + 68083282 68084260 SVA_A 1864 + 472 1864 23177 23 7 86 50 1 4 54 3 0 70 4 224 115 2 0 28 13 121 26 45 54 537 chain 13401 chr7 159345973 + 68095574 68095740 L1PA8 5853 + 5577 5739 64468 32 2 0 73 1 0 9 1 0 48 chain 6644 chr7 159345973 + 68109643 68109725 MSTB 430 + 2 84 78829 82 chain 23704 chr7 159345973 + 68123949 68124307 THE1B 368 + 0 368 51273 15 2 0 24 1 6 29 8 9 24 0 5 5 0 1 54 2 1 18 5 1 55 0 6 40 1 0 75 chain 45867 chr7 159345973 + 68192072 68192643 L1PA8 5853 + 5286 5853 31123 194 0 1 54 0 1 28 1 0 44 2 0 70 2 1 61 2 1 19 1 0 93 chain 105109 chr7 159345973 + 68230865 68232180 LTR12C 1709 + 0 1709 17670 9 2 0 206 0 18 163 7 5 35 0 1 213 0 278 184 1 0 4 4 2 106 0 4 211 0 101 153 2 1 15 chain 41959 chr7 159345973 + 68265728 68266304 LTR10A 586 + 0 586 33380 144 2 1 34 2 3 20 11 12 50 0 10 7 1 2 220 8 6 77 chain 59470 chr7 159345973 + 68288798 68289879 MER4E1 777 + 0 769 26517 25 0 2 62 331 0 451 2 10 24 0 9 186 chain 64777 chr7 159345973 + 68323726 68324508 LTR17 781 + 0 773 25242 299 10 0 27 1 2 445 chain 3084 chr7 159345973 + 68329630 68329666 LTR34 700 + 589 625 98940 36 chain 25890 chr7 159345973 + 68368272 68368633 THE1D 372 + 0 372 47882 160 1 3 9 18 27 173 chain 4685 chr7 159345973 + 68394246 68394305 L1PB1 5432 + 5346 5403 87354 24 1 0 21 1 0 12 chain 34148 chr7 159345973 + 68394921 68396322 L1PB1 5432 + 4819 5416 38602 280 788 0 15 1 0 20 1 0 13 1 0 9 2 0 3 2 0 8 2 0 45 14 13 11 1 0 41 7 6 13 3 0 6 54 64 8 9 0 17 1 0 13 1 0 12 chain 16840 chr7 159345973 + 68407643 68407882 MER41B 635 + 10 250 59987 91 0 1 26 1 2 49 16 15 56 chain 19053 chr7 159345973 + 68428008 68428278 AluSc 308 + 29 306 57491 99 10 0 109 16 33 36 chain 38045 chr7 159345973 + 68432944 68433491 MLT2A2 560 + 0 560 36037 37 0 1 200 6 7 154 3 14 71 14 0 7 14 28 41 chain 25208 chr7 159345973 + 68453912 68454215 MER41C 542 + 0 304 48933 49 0 1 254 chain 27499 chr7 159345973 + 68482258 68482624 THE1B 368 + 0 368 45584 13 2 0 27 0 5 127 10 9 187 chain 14635 chr7 159345973 + 68526013 68526292 L1PB1 5432 + 5158 5413 62758 9 2 0 6 0 1 46 2 1 16 1 0 44 1 0 15 1 0 4 19 8 19 8 5 14 2 0 22 3 2 21 1 0 13 1 0 9 chain 95711 chr7 159345973 + 68567799 68569009 HSMAR1 1287 + 0 1214 18809 108 0 1 7 3 9 471 4 3 578 2 0 37 chain 44305 chr7 159345973 + 68652783 68653273 L1P1 4361 + 3612 4102 31943 490 chain 18674 chr7 159345973 + 68673281 68673515 LTR8 732 + 31 265 57924 234 chain 43288 chr7 159345973 + 68692642 68693185 MER41A 554 + 0 543 32586 82 11 12 269 1 0 180 chain 29697 chr7 159345973 + 68698768 68699221 MLT2A1 477 + 0 477 42372 37 0 1 46 1 0 84 5 2 10 1 2 13 4 5 37 1 0 147 30 56 37 chain 42768 chr7 159345973 + 68727525 68728244 L1MA3 4352 + 3633 4305 32903 48 13 15 203 1 0 40 0 1 108 1 3 20 93 50 113 5 1 25 2 0 22 2 1 5 1 0 17 chain 23983 chr7 159345973 + 68842666 68842948 AluSp 311 + 0 289 50817 50 0 7 232 chain 59918 chr7 159345973 + 68866550 68867304 MER4E1 777 + 0 767 26399 15 5 6 252 1 4 262 17 12 111 0 14 91 chain 7080 chr7 159345973 + 68880099 68880205 HERVL-int 5654 + 5200 5306 77331 13 14 14 79 chain 112016 chr7 159345973 + 68902060 68903483 THE1A-int 1579 + 0 1570 16811 21 1 33 558 0 1 23 9 12 4 1 0 4 0 1 163 5 118 337 0 1 163 4 0 81 0 1 49 chain 27837 chr7 159345973 + 68903492 68903847 THE1A 353 + 0 353 45126 15 2 0 33 0 1 45 1 0 259 chain 17830 chr7 159345973 + 68947182 68947539 THE1B 368 + 0 368 58849 24 1 0 22 0 6 16 17 18 20 24 25 38 5 4 25 9 16 11 26 24 119 chain 46707 chr7 159345973 + 68981942 68982503 LTR10C 591 + 0 563 30769 80 1 0 114 1 2 313 1 3 51 chain 44922 chr7 159345973 + 68983745 68984293 MER41A 554 + 0 554 31623 111 0 1 357 7 12 73 chain 28997 chr7 159345973 + 68997096 68997409 AluYa5 310 + 0 310 43326 132 3 0 178 chain 29281 chr7 159345973 + 69033190 69034497 L1PB1 5432 + 4919 5420 42922 45 7 5 128 9 8 9 776 0 24 1 0 9 1 0 9 10 6 6 2 0 9 0 2 41 2 1 15 1 0 44 1 0 16 15 2 29 2 0 5 1 0 14 2 0 24 1 0 21 2 0 9 1 4 16 chain 129158 chr7 159345973 + 69062801 69064195 L1PA3long 6157 + 4763 6157 14125 1394 chain 13506 chr7 159345973 + 69085077 69085244 L1PA8 5853 + 5688 5853 64307 52 2 1 19 1 0 93 chain 41792 chr7 159345973 + 69105823 69107425 MER4D 903 + 228 894 33495 289 18 33 17 5 3 32 0 1 35 46 47 24 960 9 176 chain 17899 chr7 159345973 + 69152090 69152461 L1PB1 5432 + 5083 5420 58760 20 3 0 11 1 0 22 1 0 11 1 0 11 5 1 8 2 0 53 2 1 16 1 0 43 1 0 16 4 0 4 8 0 27 2 0 5 6 5 9 2 0 18 0 1 5 31 29 5 1 0 16 chain 11758 chr7 159345973 + 69212351 69212548 MER1B 344 + 153 344 67295 68 3 0 30 37 34 59 chain 7816 chr7 159345973 + 69280751 69280847 LTR29 598 + 462 558 75321 96 chain 24922 chr7 159345973 + 69281265 69281622 THE1B 368 + 0 368 49396 169 1 0 32 0 1 12 17 29 63 7 6 56 chain 23865 chr7 159345973 + 69305015 69305390 THE1D 372 + 0 372 51005 56 10 1 115 20 22 27 13 18 101 1 0 32 chain 19997 chr7 159345973 + 69330331 69330572 MER9a1 513 + 0 265 56389 24 0 23 210 0 1 7 chain 34671 chr7 159345973 + 69337334 69338105 MER4A1 472 + 0 470 38237 171 0 3 39 0 18 185 322 0 54 chain 9476 chr7 159345973 + 69362801 69362921 L1PB2 3958 + 3719 3838 71542 56 1 0 63 chain 20567 chr7 159345973 + 69367292 69367535 AluSp 311 + 50 293 55684 243 chain 34045 chr7 159345973 + 69376126 69376500 L1PA4 6152 + 5778 6152 38673 374 chain 113909 chr7 159345973 + 69393647 69395028 LTR12C 1709 + 0 1709 16561 265 0 2 170 0 1 289 3 321 27 0 2 35 1 0 4 4 2 106 0 4 337 0 4 140 chain 33225 chr7 159345973 + 69403738 69404285 L1PB1 5432 + 4903 5420 39324 199 14 12 24 1 0 8 1 0 10 10 6 6 2 0 52 2 1 16 1 0 43 1 0 12 29 16 19 2 0 5 1 0 14 2 0 23 2 1 20 0 3 11 1 0 16 chain 6013 chr7 159345973 + 69479919 69479999 MADE1 96 + 0 95 81027 36 0 15 44 chain 54286 chr7 159345973 + 69482426 69483163 LTR17 781 + 0 757 28123 53 6 3 123 1 0 148 1 0 248 9 12 119 13 35 16 chain 19986 chr7 159345973 + 69499475 69499764 THE1B 368 + 0 306 56402 108 5 6 50 0 11 15 7 10 9 1 5 16 1 0 10 1 0 66 chain 47527 chr7 159345973 + 69786069 69786673 LTR12 884 + 0 634 30469 25 1 0 299 0 25 25 7 6 127 0 7 120 chain 106210 chr7 159345973 + 69828961 69830405 L1PA8 5853 + 4414 5853 17542 371 1 0 142 0 1 8 0 4 68 7 9 142 1 0 318 0 1 86 1 0 43 3 1 24 65 66 42 2 1 19 1 0 45 13 6 42 chain 567893 chr7 159345973 + 70197328 70203357 L1HS 6032 + 0 6032 18 888 0 1 4856 0 2 285 chain 19886 chr7 159345973 + 70275584 70275957 THE1C 375 + 0 375 56553 29 5 0 6 0 5 39 12 13 50 18 22 17 46 43 151 chain 201366 chr7 159345973 + 70331575 70333969 L1PA7 6471 + 4063 6466 9669 29 0 1 250 1 7 107 0 1 29 1 2 716 1 0 265 0 1 146 1 4 79 1 4 750 6 0 12 chain 11459 chr7 159345973 + 70363338 70363477 L1HS 6032 + 5903 6032 67815 117 10 0 12 chain 29433 chr7 159345973 + 70484829 70485267 L1PB2 3958 + 3409 3838 42689 17 0 1 12 2 0 12 4 0 94 1 0 72 1 0 64 2 1 48 0 3 12 4 3 8 2 0 5 3 0 5 7 9 63 chain 32502 chr7 159345973 + 70811941 70812317 L1PA5 6144 + 5755 6131 39942 376 chain 9759 chr7 159345973 + 70816652 70816780 L1MA9 1812 + 387 514 70911 46 1 0 81 chain 4899 chr7 159345973 + 70822212 70822433 L1PB1 5432 + 4771 4992 38753 221 chain 62842 chr7 159345973 + 70822434 70823240 LTR12 884 + 0 884 25669 18 0 13 203 0 70 37 4 3 21 2 1 12 2 0 331 1 0 175 chain 7493 chr7 159345973 + 70823405 70823743 L1PB1 5432 + 5114 5420 38753 24 1 0 8 1 0 12 7 3 6 2 0 52 7 6 11 1 0 39 47 33 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 9651 chr7 159345973 + 70823768 70823922 L1MA7 2200 + 1787 1943 71157 42 1 0 31 0 1 4 20 22 56 chain 513930 chr7 159345973 + 70838049 70844313 L1PA7 6471 + 5 6470 2574 192 15 14 110 19 189 109 6 7 52 3 4 68 1 0 460 0 4 23 1 0 926 0 4 173 5 4 87 1 2 207 0 1 397 6 5 51 0 1 426 0 2 6 1 2 13 0 4 382 9 13 159 1 0 8 0 3 541 0 1 10 1 0 150 1 5 186 0 1 355 0 1 4 1 0 247 0 3 691 7 9 153 chain 28296 chr7 159345973 + 70860080 70860502 LTR7B 505 + 0 495 44422 108 0 10 66 35 11 17 0 88 62 1 0 23 0 1 55 14 13 41 chain 42359 chr7 159345973 + 70879760 70880360 MER41B 635 + 25 628 33157 66 11 1 36 0 1 149 0 1 110 0 1 32 1 0 85 0 1 7 7 12 22 13 18 61 chain 18889 chr7 159345973 + 70891434 70891691 LTR8 732 + 0 271 57649 15 0 16 11 6 0 102 2 0 12 0 6 109 chain 47115 chr7 159345973 + 70908129 70908775 PABL_A 660 + 0 651 30604 23 7 8 27 4 9 8 5 0 7 5 4 4 0 1 163 1 0 10 2 1 173 3 5 42 0 4 162 chain 10449 chr7 159345973 + 70974049 70974170 LTR45C 530 + 374 495 69522 121 chain 38935 chr7 159345973 + 70989832 70990381 LTR71B 605 + 0 556 35406 56 8 7 60 13 25 124 1 9 62 15 3 210 chain 28064 chr7 159345973 + 70998821 70999199 THE1C 375 + 0 375 44770 180 0 1 4 12 10 43 1 0 111 1 0 26 chain 44116 chr7 159345973 + 71001963 71002511 MLT2A2 560 + 0 560 32073 132 12 13 254 3 14 147 chain 34535 chr7 159345973 + 71017266 71018128 MER4A1 472 + 0 472 38335 151 0 1 69 10 31 118 412 0 102 chain 32492 chr7 159345973 + 71017638 71018026 MER48 407 + 19 407 39950 388 chain 31547 chr7 159345973 + 71030189 71030576 MLT2A1 477 + 0 393 40706 142 0 1 25 1 5 32 0 1 187 chain 42767 chr7 159345973 + 71032217 71032854 L1PB1 5432 + 4672 5300 32904 36 1 0 90 0 8 162 5 4 128 18 16 21 1 0 10 1 0 11 9 3 7 2 0 52 2 1 15 1 0 45 1 0 7 0 1 7 1 0 4 chain 3959 chr7 159345973 + 71035232 71035280 LTR53 516 + 0 48 91698 48 chain 131268 chr7 159345973 + 71037414 71038962 LTR12C 1709 + 0 1709 13894 30 0 2 119 2 1 114 7 8 300 5 4 121 0 159 254 1 0 5 3 1 106 0 4 481 chain 4993 chr7 159345973 + 71039849 71039906 MSTC 436 + 379 436 85691 57 chain 3408 chr7 159345973 + 71062776 71062814 L1MB7 1623 + 999 1037 96000 38 chain 4359 chr7 159345973 + 71071875 71071941 Kanga1d 558 + 27 97 89117 51 3 7 12 chain 29782 chr7 159345973 + 71073838 71074180 LTR14A 344 + 0 344 42256 262 1 3 79 chain 29531 chr7 159345973 + 71102091 71102407 AluYb8 318 + 0 313 42574 132 3 0 181 chain 16516 chr7 159345973 + 71109461 71109749 LTR45B 484 + 8 312 60349 73 15 17 10 15 15 30 10 11 75 6 19 54 chain 12049 chr7 159345973 + 71111787 71111933 LTR8 732 + 586 732 66759 146 chain 32691 chr7 159345973 + 71179073 71179521 MER4A1 472 + 0 472 39770 15 26 28 50 0 1 153 7 28 197 chain 23389 chr7 159345973 + 71181898 71182182 AluSp 311 + 5 290 51782 276 0 1 8 chain 26600 chr7 159345973 + 71211127 71211489 THE1A 353 + 0 353 46832 109 5 4 81 5 4 26 8 1 128 chain 128605 chr7 159345973 + 71211489 71213052 THE1A-int 1579 + 0 1574 14205 241 0 3 168 1 11 48 0 4 19 1 0 656 2 1 61 1 0 41 7 4 317 chain 26918 chr7 159345973 + 71213057 71213409 THE1A 353 + 0 353 46381 110 1 0 33 0 2 57 1 0 109 6 7 35 chain 5078 chr7 159345973 + 71262980 71263103 MLT1B 390 + 148 263 85257 37 6 4 9 1 0 4 1 0 6 24 21 29 1 0 5 chain 5039 chr7 159345973 + 71284185 71284241 LTR12_ 688 + 621 677 85471 56 chain 29336 chr7 159345973 + 71309862 71310216 THE1B 368 + 0 368 42829 40 0 15 117 1 0 196 chain 5684 chr7 159345973 + 71347288 71347355 MIR 256 + 70 137 82413 67 chain 35193 chr7 159345973 + 71357732 71358217 LTR12F 595 + 0 595 37900 55 8 160 25 42 0 355 chain 23728 chr7 159345973 + 71377627 71377972 THE1D 372 + 0 333 51233 79 19 0 36 13 11 18 0 3 39 1 7 140 chain 6853 chr7 159345973 + 71387186 71387301 MADE1 96 - 0 96 78130 38 14 0 6 6 0 5 0 1 46 chain 5431 chr7 159345973 + 71387854 71387921 LTR16C 481 + 406 473 83554 67 chain 12852 chr7 159345973 + 71436050 71436212 LTR8 732 + 571 732 65347 69 1 0 92 chain 7276 chr7 159345973 + 71438564 71438684 MIR 256 + 122 241 76747 11 0 2 17 6 7 76 4 0 6 chain 53822 chr7 159345973 + 71459455 71460201 MER4E1 777 + 0 759 28277 23 1 0 15 0 4 28 0 7 6 5 0 149 12 10 11 0 1 43 0 1 62 0 2 162 1 0 16 11 18 201 chain 23376 chr7 159345973 + 71492010 71492281 AluSc5 308 + 11 283 51805 119 0 1 152 chain 6087 chr7 159345973 + 71574672 71574742 MER5A 189 + 43 113 80775 70 chain 31280 chr7 159345973 + 71582048 71582953 L1PB1 5432 + 4860 5420 40913 103 1 2 126 327 14 9 3 0 20 1 0 13 1 0 9 17 11 50 21 19 37 37 24 30 24 19 24 1 0 21 1 0 29 chain 29838 chr7 159345973 + 71747113 71747433 L1HS 6032 + 5712 6032 42196 320 chain 18879 chr7 159345973 + 71756960 71757317 THE1B 368 + 7 368 57668 101 8 9 44 39 32 7 1 0 8 2 6 10 11 19 63 16 15 47 chain 28594 chr7 159345973 + 71838588 71838965 THE1C 375 + 0 375 43965 61 7 9 51 3 0 229 1 0 25 chain 11281 chr7 159345973 + 71847188 71847361 THE1B 368 + 0 175 68114 19 1 0 89 23 27 34 1 0 6 chain 43146 chr7 159345973 + 71880857 71881396 MLT2A2 560 + 0 549 32686 341 1 0 58 3 14 136 chain 13831 chr7 159345973 + 71885452 71885630 MER4E1 777 + 581 770 63825 6 1 0 111 0 12 60 chain 20656 chr7 159345973 + 71900270 71900544 L1PB4 2604 + 695 974 55556 66 6 11 202 chain 42811 chr7 159345973 + 71920813 71921369 L1PA7 6471 + 5907 6469 32882 49 0 11 224 0 1 105 22 16 156 chain 3680 chr7 159345973 + 71928559 71928604 MADE1 96 + 46 91 93735 45 chain 22201 chr7 159345973 + 71949185 71950180 MER51B 395 + 0 395 53554 84 0 1 30 14 16 70 678 75 119 chain 4679 chr7 159345973 + 71981685 71981752 MER21A 919 + 401 463 87386 18 6 1 43 chain 45902 chr7 159345973 + 72038510 72039063 MER41A 554 + 0 554 31103 91 1 2 461 chain 20909 chr7 159345973 + 72041683 72042029 THE1B 368 + 26 368 55241 137 7 6 23 2 0 5 2 0 12 1 5 10 7 6 69 27 25 44 chain 55593 chr7 159345973 + 72096672 72097303 L1PA5 6144 + 5497 6128 27688 631 chain 3745 chr7 159345973 + 72113622 72113768 MER58A 224 + 56 186 93294 36 86 70 24 chain 514618 chr7 159345973 + 72142015 72147844 L1PA5 6144 + 22 5880 2539 401 0 1 97 4 0 1824 0 2 158 0 1 349 0 2 300 0 1 1183 0 4 90 0 1 192 1 0 196 0 1 467 1 5 86 1 0 117 0 18 362 chain 4447 chr7 159345973 + 72149496 72149551 MSTB1 431 + 364 419 88619 55 chain 41867 chr7 159345973 + 72187893 72188691 L1PB1 5432 + 4737 5422 33446 57 9 0 10 1 9 288 84 4 9 1 0 24 1 0 9 20 15 6 2 0 52 2 1 15 1 0 45 40 27 19 2 0 4 1 0 15 2 0 21 6 5 19 1 0 13 1 0 18 chain 2163 chr7 159345973 + 72193732 72193759 L1PB1 5432 + 5071 5098 105490 27 chain 4235 chr7 159345973 + 72193792 72193866 L1PB1 5432 + 5144 5212 89912 13 6 2 9 2 0 44 chain 3553 chr7 159345973 + 72193898 72193937 L1PB1 5432 + 5242 5281 94823 39 chain 6659 chr7 159345973 + 72193993 72194094 L1PB1 5432 + 5327 5422 78777 5 1 0 14 2 0 24 1 0 21 1 0 14 1 0 17 chain 47409 chr7 159345973 + 72202767 72203351 L1PA8 5853 + 5255 5853 30504 74 0 18 47 0 2 166 1 0 46 2 0 71 1 0 61 2 1 19 1 0 93 chain 43307 chr7 159345973 + 72229401 72230273 L1PA8 5853 + 5313 5853 32560 249 1 0 47 2 0 73 1 0 8 1 0 49 5 2 19 325 1 92 chain 25746 chr7 159345973 + 72257381 72257747 L1PB2 3958 + 3477 3838 48100 63 2 0 6 0 1 46 6 5 19 1 0 62 1 0 92 9 8 59 chain 39474 chr7 159345973 + 72306012 72306513 MER4E1 777 + 23 522 35027 318 3 2 36 5 0 37 0 4 102 chain 8984 chr7 159345973 + 72339448 72339570 LTR39 781 + 64 186 72591 20 1 2 94 1 0 6 chain 45970 chr7 159345973 + 72381219 72381862 L1PA8 5853 + 5227 5853 31071 269 1 2 35 0 5 8 30 10 8 1 0 45 3 1 68 2 1 14 3 2 45 2 1 19 1 0 46 0 4 43 chain 46935 chr7 159345973 + 72559963 72560514 MER41A 554 + 0 554 30685 100 0 3 451 chain 23946 chr7 159345973 + 72561787 72562273 LTR10G 522 + 22 497 50871 69 7 0 27 9 16 40 5 0 11 109 105 61 0 1 13 4 5 79 0 2 16 6 0 30 chain 31238 chr7 159345973 + 72598006 72598425 MLT2A1 477 + 2 477 40941 26 1 0 112 0 1 20 8 12 212 0 53 20 2 1 18 chain 3487 chr7 159345973 + 72656147 72656306 L1M2 1805 + 225 385 95338 40 101 102 18 chain 23812 chr7 159345973 + 72671968 72672326 THE1B 368 + 0 367 51081 44 0 15 7 0 2 6 0 1 32 6 7 58 10 9 18 5 0 20 3 0 72 1 0 76 chain 4443 chr7 159345973 + 72672642 72672739 MER8 282 + 170 269 88634 21 30 33 12 1 0 33 chain 38092 chr7 159345973 + 72710927 72711431 LTR19B 566 + 0 512 35997 45 1 0 48 1 6 201 1 2 12 0 1 52 6 0 85 1 0 37 3 12 11 chain 4874 chr7 159345973 + 72727895 72727954 MER5A 189 + 126 185 86294 59 chain 4164 chr7 159345973 + 72753431 72753479 Tigger1 2417 + 2160 2208 90364 48 chain 16370 chr7 159345973 + 72757677 72757932 MER65A 464 + 60 325 60549 69 9 18 43 1 2 46 9 10 71 1 0 6 chain 16788 chr7 159345973 + 72767008 72767323 MER65A 464 + 0 339 60043 47 60 89 59 18 14 104 1 0 26 chain 11827 chr7 159345973 + 72801961 72802149 MER30 238 + 0 238 67156 25 1 33 43 11 23 29 1 7 78 chain 6295 chr7 159345973 + 72852213 72852292 Tigger3c 601 + 237 317 80022 14 0 1 65 chain 6037 chr7 159345973 + 72878291 72878360 MER4D 903 + 715 784 80936 69 chain 80924 chr7 159345973 + 72951213 72952196 LTR5B 1012 + 0 1012 21453 95 5 7 16 5 19 218 0 1 44 7 14 60 0 2 171 0 2 329 0 1 33 chain 8476 chr7 159345973 + 72979772 72979875 MER50 708 + 571 674 73734 103 chain 7964 chr7 159345973 + 73011143 73011239 HY3 101 + 0 96 74966 96 chain 7964 chr7 159345973 + 73039084 73039180 HY3 101 + 0 96 74965 96 chain 7964 chr7 159345973 + 73067230 73067326 HY3 101 + 0 96 74964 96 chain 7964 chr7 159345973 + 73095356 73095452 HY3 101 + 0 96 74963 96 chain 13986 chr7 159345973 + 73277710 73277892 L1PA16 3655 + 3402 3578 63620 156 6 0 20 chain 3652 chr7 159345973 + 73315790 73315831 MADE1 96 + 1 42 94012 41 chain 59333 chr7 159345973 + 73360320 73360985 L1PA5 6144 + 5298 5963 26553 665 chain 4762 chr7 159345973 + 73385862 73385923 MER50 708 + 495 560 86904 8 1 0 40 0 5 12 chain 3242 chr7 159345973 + 73585278 73585314 MER5A 189 + 1 37 97558 36 chain 23788 chr7 159345973 + 73592464 73592768 AluY 311 + 0 293 51128 66 4 0 67 16 9 151 chain 8019 chr7 159345973 + 73753278 73753380 Tigger1 2417 + 1822 1924 74840 102 chain 81747 chr7 159345973 + 73787405 73791194 MER41-int 2638 + 135 2636 21287 35 28 13 30 4 1 34 1 0 5 18 8 35 4 0 70 2209 1256 68 6 5 171 15 13 32 2 0 241 20 21 50 5 7 174 303 0 140 0 3 89 chain 33872 chr7 159345973 + 73791209 73791637 MER41A 554 + 5 441 38805 19 0 3 60 5 10 221 0 1 4 1 0 118 chain 156724 chr7 159345973 + 73835241 73837290 SVA_F 1814 + 0 1803 11955 833 31 22 28 47 0 6 49 0 59 77 14 181 78 0 34 1 0 620 0 1 5 chain 1814 chr7 159345973 + 73836074 73836105 SVA_F 1814 + 873 905 33648 7 0 1 24 chain 2492 chr7 159345973 + 73836200 73836235 SVA_F 1814 + 1094 1129 60122 35 chain 4507 chr7 159345973 + 73836294 73836371 SVA_F 1814 + 1012 1089 33648 77 chain 3336 chr7 159345973 + 73836573 73836630 SVA_F 1814 + 1213 1270 33648 57 chain 19978 chr7 159345973 + 73844278 73844568 MER4A1 472 + 150 462 56415 24 0 1 18 20 21 11 0 21 14 1 0 202 chain 79134 chr7 159345973 + 73845412 73846359 LTR13A 966 + 0 966 21829 74 1 5 94 0 17 85 0 1 394 2 0 127 16 15 154 chain 5364 chr7 159345973 + 74019900 74019989 MLT1B 390 + 0 88 83888 34 17 16 38 chain 20012 chr7 159345973 + 74116120 74116418 AluSq2 311 + 9 290 56372 102 7 5 17 0 1 17 25 7 103 4 6 23 chain 19480 chr7 159345973 + 74118115 74118361 AluSc 308 + 21 265 57053 110 2 0 17 2 0 5 0 2 110 chain 11284 chr7 159345973 + 74133774 74133947 MER41B 635 + 11 173 68108 106 23 12 44 chain 19348 chr7 159345973 + 74139970 74140572 MER41B 635 + 79 368 57182 45 30 30 66 314 0 58 0 1 89 chain 42941 chr7 159345973 + 74160038 74161591 MER41B 635 + 0 632 32816 93 1 0 34 1 2 11 0 5 309 987 61 117 chain 39008 chr7 159345973 + 74164976 74165534 LTR61 567 + 10 554 35351 7 6 0 38 17 11 25 7 0 22 1 0 22 0 5 81 7 11 286 3 0 36 chain 6059 chr7 159345973 + 74296818 74296911 MLT1B 390 + 263 357 80873 54 10 11 29 chain 3321 chr7 159345973 + 74323030 74323075 Tigger3 1187 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482 + 0 477 47639 101 15 14 17 0 51 41 5 37 46 0 1 78 0 2 31 13 14 44 chain 274336 chr7 159345973 + 75779309 75786340 HERVH-int 3825 + 0 3825 7593 319 26 25 20 4 5 33 15 14 30 474 31 8 2 0 4 0 1 25 53 254 9 1 0 92 2 0 110 2 1 248 15 0 201 9 0 28 0 2 10 1 0 307 2776 0 309 4 9 32 0 1 498 11 13 5 2 0 329 6 0 4 158 0 39 1 0 809 chain 29075 chr7 159345973 + 75781535 75781926 LTR7 482 + 0 474 43227 79 7 57 88 0 1 29 7 38 13 0 1 168 chain 4310 chr7 159345973 + 75781982 75782065 HERVH-int 3825 + 45 132 89449 12 18 22 53 chain 23654 chr7 159345973 + 75782078 75782381 HERVH-int 3825 + 145 446 51346 188 1 0 66 23 22 25 chain 13632 chr7 159345973 + 75783821 75784010 HERVH-int 3825 + 1469 1653 64114 4 1 0 99 5 0 55 0 1 25 chain 27699 chr7 159345973 + 75788163 75788557 LTR7 482 + 0 477 45318 28 8 7 66 0 50 73 5 37 46 0 1 111 13 14 44 chain 12887 chr7 159345973 + 75801861 75802043 MER41B 635 + 0 183 65276 113 13 14 56 chain 43852 chr7 159345973 + 75807650 75808194 MER41A 554 + 0 544 32218 74 0 1 291 8 7 171 chain 12718 chr7 159345973 + 76005035 76005177 L1PA4 6152 + 6009 6151 65581 142 chain 12137 chr7 159345973 + 76006987 76007137 MER2 342 + 73 217 66590 7 6 0 137 chain 3330 chr7 159345973 + 76016506 76016545 MLT2A2 560 + 508 547 96764 39 chain 11770 chr7 159345973 + 76331475 76331653 MER30 238 + 37 238 67267 55 19 30 64 2 14 38 chain 4544 chr7 159345973 + 76343220 76343275 MER20 218 + 98 153 88092 55 chain 70562 chr7 159345973 + 76447060 76447851 L1PA5 6144 + 5355 6144 23854 34 2 0 755 chain 7930 chr7 159345973 + 76523604 76523703 HY3 101 + 0 99 75043 99 chain 22301 chr7 159345973 + 76552784 76553027 L1P1 4361 + 3950 4192 53406 201 1 0 41 chain 45861 chr7 159345973 + 76621479 76622360 MER41A 554 + 0 554 31128 164 332 0 302 0 5 83 chain 180349 chr7 159345973 + 76651415 76653380 L1PA2 6032 + 4068 6032 10573 312 1 0 1652 chain 73934 chr7 159345973 + 76695378 76696183 L1PA3long 6157 + 5351 6156 23110 805 chain 9351 chr7 159345973 + 76720320 76720442 MER85 139 + 6 139 71815 84 0 10 10 0 1 28 chain 544316 chr7 159345973 + 76728485 76734505 L1PA3long 6157 + 0 6152 1064 152 0 1 98 5 6 484 0 1 34 0 128 3423 0 1 1824 chain 282330 chr7 159345973 + 76766412 76770182 L1PB1 5432 + 1692 5420 7366 560 0 1 117 6 2 115 5 6 25 0 1 323 1 0 423 0 1 263 9 10 184 27 10 253 7 0 217 0 1 267 26 29 108 0 13 482 1 2 9 5 0 24 1 0 9 16 11 11 4 2 49 2 1 16 1 0 42 2 1 16 3 0 17 9 0 14 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 3739 chr7 159345973 + 76778359 76778411 MER53 195 - 98 153 93340 21 0 3 31 chain 19988 chr7 159345973 + 76885908 76886204 L1PA8 5853 + 5564 5853 56399 44 2 0 69 15 13 5 1 0 45 2 1 19 7 6 87 chain 7964 chr7 159345973 + 77013582 77013678 HY3 101 + 0 96 74961 96 chain 7964 chr7 159345973 + 77041646 77041742 HY3 101 + 0 96 74960 96 chain 92403 chr7 159345973 + 77160782 77161797 L1PA3long 6157 + 5142 6157 19287 1015 chain 12849 chr7 159345973 + 77173032 77173199 L1PA8A 6298 + 6126 6292 65357 65 2 1 100 chain 21738 chr7 159345973 + 77185552 77185899 L1M1 2793 + 766 1116 54182 9 2 0 22 3 1 4 1 0 29 2 0 8 1 0 45 14 12 5 1 0 102 1 0 26 0 10 44 0 5 28 chain 14893 chr7 159345973 + 77243624 77243861 Tigger3b 1229 + 273 533 62395 18 1 0 47 0 1 60 0 3 18 5 22 27 16 19 45 chain 30040 chr7 159345973 + 77271088 77271492 MLT2A1 477 + 5 397 42013 161 7 4 12 0 1 18 1 3 80 1 0 101 11 0 12 chain 26728 chr7 159345973 + 77274728 77275032 L1PA5 6144 + 5834 6138 46644 304 chain 43998 chr7 159345973 + 77289875 77290375 L1PA5 6144 + 5617 6132 32130 187 0 1 155 0 7 32 0 7 126 chain 30193 chr7 159345973 + 77317174 77317534 L1PA6 6164 + 5805 6162 41858 165 0 1 4 5 1 186 chain 177054 chr7 159345973 + 77340857 77343306 HERVH-int 3825 + 751 3566 10725 12 0 2 15 1 0 264 1 0 127 12 16 39 16 0 205 9 0 43 5 6 355 16 17 202 0 24 8 37 18 148 1 0 178 5 6 383 0 367 57 11 22 18 11 12 131 22 23 117 chain 46166 chr7 159345973 + 77349923 77350431 L1PA3long 6157 + 5650 6157 30978 146 3 0 354 0 2 5 chain 25290 chr7 159345973 + 77364397 77364684 L1PA3long 6157 + 5872 6157 48799 280 2 0 5 chain 3722 chr7 159345973 + 77376178 77376258 MADE1 96 + 0 94 93458 20 9 25 16 8 6 27 chain 10231 chr7 159345973 + 77390639 77390761 L1PA4 6152 + 6026 6152 69942 10 0 1 99 0 3 13 chain 28466 chr7 159345973 + 77492972 77493339 THE1B 368 + 0 366 44173 172 11 10 184 chain 126824 chr7 159345973 + 77493341 77494919 THE1B-int 1605 + 0 1600 14436 430 1 26 985 3 0 159 chain 155461 chr7 159345973 + 77508541 77510598 SVA_F 1814 + 101 1814 12041 717 232 0 37 1 0 25 0 2 10 1 0 56 3 18 172 127 0 676 chain 8556 chr7 159345973 + 77509311 77509490 SVA_F 1814 + 861 1058 41572 25 0 2 4 0 1 55 14 29 81 chain 8142 chr7 159345973 + 77509795 77509922 SVA_F 1814 + 1011 1089 68111 15 49 0 63 chain 1395 chr7 159345973 + 77509812 77509846 SVA_F 1814 + 865 900 79672 22 0 1 12 chain 23838 chr7 159345973 + 77510599 77511158 L1PA15 4387 + 3846 4347 51041 36 10 8 22 19 19 21 12 6 57 17 19 70 1 0 26 1 0 54 2 1 19 69 30 22 17 14 7 1 0 4 0 1 31 2 0 14 6 1 19 chain 4348 chr7 159345973 + 77567584 77567660 MER5A 189 + 81 168 89187 28 1 0 5 4 5 14 0 11 24 chain 24859 chr7 159345973 + 77689683 77689984 AluSp 311 + 0 295 49509 89 4 0 43 2 0 163 chain 12584 chr7 159345973 + 77801613 77801789 Tigger4b 360 + 133 301 65822 34 1 0 120 7 0 14 chain 2793 chr7 159345973 + 77803588 77803618 MIRb 242 + 167 197 101682 30 chain 181955 chr7 159345973 + 77830432 77832949 Charlie3 2679 + 68 2674 10499 319 18 15 14 1 59 27 1 0 95 1 0 43 9 8 22 0 1 31 1 0 108 1 4 22 1 2 178 2 3 53 4 0 103 0 3 24 0 4 164 0 36 31 9 7 130 1 0 31 0 3 108 0 1 32 8 9 13 8 0 181 0 11 12 2 0 6 4 1 325 0 1 57 11 5 233 2 0 6 8 9 40 2 1 15 chain 38678 chr7 159345973 + 77836508 77836972 L1PA7 6471 + 5992 6466 35582 150 0 8 158 0 2 156 chain 16045 chr7 159345973 + 77904889 77905108 MER30 238 + 0 238 60966 108 2 0 7 2 23 100 chain 15354 chr7 159345973 + 78003536 78003745 MER47A 366 + 157 366 61845 76 1 2 72 1 0 59 chain 4077 chr7 159345973 + 78108802 78108848 L1M1 2793 + 1379 1425 90904 46 chain 25042 chr7 159345973 + 78162249 78162549 AluYc 301 + 6 296 49208 116 10 0 174 chain 465291 chr7 159345973 + 78288584 78294084 L1PA5 6144 + 614 6140 3979 555 9 0 54 0 1 146 0 1 63 4 9 153 0 1 62 7 1 174 0 5 144 4 0 40 5 6 143 0 2 139 0 1 41 0 5 202 0 4 129 7 2 78 0 4 21 0 5 30 1 0 26 0 4 263 0 5 2849 8 15 143 chain 69769 chr7 159345973 + 78297229 78297998 L1PA2 6032 + 5269 6032 24049 607 6 0 156 chain 425836 chr7 159345973 + 78317532 78322738 L1PA7 6471 + 844 6438 4802 332 0 21 80 2 0 495 7 11 380 0 4 470 42 379 80 0 4 402 1 0 47 9 13 251 0 4 183 1 0 42 5 6 4 1 0 613 0 4 952 0 3 32 0 4 38 0 2 249 6 7 482 chain 110419 chr7 159345973 + 78340315 78341649 L1PA7 6471 + 3817 5150 17016 774 3 0 34 1 0 107 0 1 96 0 1 58 0 1 261 chain 110718 chr7 159345973 + 78341650 78342967 L1PA7 6471 + 5150 6466 16975 475 6 9 67 0 2 133 11 7 616 2 0 7 chain 5112 chr7 159345973 + 78356352 78356421 L1MA5A 2387 + 2238 2306 85098 57 1 0 11 chain 101816 chr7 159345973 + 78403816 78404996 L1PA5 6144 + 4133 5310 18083 293 9 6 788 0 1 73 1 0 16 chain 122741 chr7 159345973 + 78423463 78425038 THE1B-int 1605 + 0 1599 15072 13 5 7 234 3 1 175 1 26 219 0 3 218 3 0 124 2 1 79 9 10 143 1 0 346 chain 28641 chr7 159345973 + 78426294 78426615 L1PA3long 6157 + 5834 6156 43884 114 0 1 207 chain 13013 chr7 159345973 + 78594265 78594455 PABL_A 660 + 0 195 65098 63 1 6 76 9 8 5 0 1 36 chain 26299 chr7 159345973 + 78624785 78625158 Tigger3b 1229 + 197 571 47271 71 24 23 16 1 0 28 1 3 32 0 1 200 chain 85924 chr7 159345973 + 78647096 78648152 L1PA6 6164 + 5102 6161 20460 5 0 1 80 8 12 18 5 0 100 0 4 352 1 0 487 chain 119073 chr7 159345973 + 78652357 78653786 L1PA7 6471 + 5040 6470 15685 155 0 4 116 15 3 96 0 1 199 2 0 11 0 1 449 0 1 284 0 8 102 chain 4283 chr7 159345973 + 78659920 78659969 L1PA5 6144 + 5781 5830 89610 49 chain 27698 chr7 159345973 + 78659969 78660279 L1PA5 6144 + 5831 6141 45320 310 chain 185785 chr7 159345973 + 78668687 78670759 L1PA3long 6157 + 2759 4833 10307 166 0 1 852 1 0 95 0 1 493 0 1 465 chain 33864 chr7 159345973 + 78824770 78825251 L1PA8 5853 + 5398 5853 38806 5 1 0 117 0 1 37 7 6 45 2 0 70 1 0 11 1 0 50 21 1 19 2 1 92 chain 74504 chr7 159345973 + 78832665 78833536 MER11D 897 + 0 895 22961 10 0 1 587 4 27 270 chain 76375 chr7 159345973 + 78866853 78867696 L1PA3long 6157 + 5309 6153 22472 74 0 1 514 1 0 186 0 1 68 chain 31239 chr7 159345973 + 78870376 78870832 L1PB2 3958 + 3391 3836 40940 48 18 12 93 1 0 14 12 0 7 0 12 40 1 0 64 1 0 72 2 0 7 0 1 14 1 0 61 chain 24568 chr7 159345973 + 78880993 78881343 L1PA16 3655 + 20 366 49908 5 1 0 26 2 0 78 1 0 129 12 13 4 1 0 91 chain 20156 chr7 159345973 + 78881354 78881576 L1PA5 6144 + 5910 6132 56184 222 chain 452389 chr7 159345973 + 78887745 78892930 L1PA4 6152 + 2 5191 4325 1705 0 1 599 0 1 5 0 1 2568 0 1 308 chain 81790 chr7 159345973 + 78908860 78910228 L1PA8A 6298 + 5227 6273 21281 262 7 6 128 3 0 19 0 4 22 325 0 99 0 3 413 4 0 4 1 5 81 chain 29082 chr7 159345973 + 78912338 78912712 MLT2A1 477 + 0 385 43218 168 2 6 5 0 1 24 0 1 90 11 16 74 chain 9207 chr7 159345973 + 79026470 79026589 L1MA7 2200 + 1225 1343 72109 103 1 0 15 chain 14494 chr7 159345973 + 79039477 79039658 L1MA4 2864 + 1821 2002 62902 181 chain 83304 chr7 159345973 + 79088861 79090011 L1PA7 6471 + 5372 6468 20963 171 3 1 23 10 9 45 1 0 18 2 1 433 6 4 126 43 6 204 16 6 49 chain 6604 chr7 159345973 + 79109786 79109877 MSTA-int 1630 - 660 748 78965 70 5 2 16 chain 56334 chr7 159345973 + 79156060 79156817 MER4E1 777 + 0 762 27477 270 17 13 67 1 0 188 20 28 15 1 3 178 chain 53731 chr7 159345973 + 79164158 79164925 MER4E1 777 + 0 764 28303 25 1 0 251 11 7 63 14 13 79 1 6 82 41 39 199 chain 42225 chr7 159345973 + 79167768 79168277 MER9a2 513 + 0 513 33233 352 0 3 138 1 2 18 chain 5280 chr7 159345973 + 79296295 79296360 L1MA6 2487 + 2142 2207 84281 65 chain 8851 chr7 159345973 + 79331863 79331957 L1PA2 6032 + 5936 6030 72860 94 chain 35489 chr7 159345973 + 79379893 79380278 L1PA5 6144 + 4879 5264 37731 385 chain 151299 chr7 159345973 + 79444006 79445694 L1PA4 6152 + 3831 5519 12266 399 0 1 404 1 0 884 chain 14353 chr7 159345973 + 79483636 79483792 L1PA2 6032 + 5876 6032 63107 156 chain 3096 chr7 159345973 + 79494992 79495031 MIR 256 + 112 151 98821 39 chain 79586 chr7 159345973 + 79585739 79586676 L1PA6 6164 + 5167 6150 21723 77 0 23 47 0 1 661 7 29 145 chain 26654 chr7 159345973 + 79594664 79595040 THE1C 375 + 0 375 46754 115 9 29 9 20 0 197 1 0 25 chain 39972 chr7 159345973 + 79616289 79616812 LTR12_ 688 + 0 662 34677 316 0 3 35 0 103 91 1 34 80 chain 4040 chr7 159345973 + 79619182 79619232 MLT1D 503 + 437 487 91149 50 chain 117623 chr7 159345973 + 79669534 79671091 THE1B-int 1605 + 13 1597 15953 417 1 26 148 1 0 84 27 27 548 0 2 138 4 5 59 1 0 4 0 1 52 0 2 6 1 0 53 1 0 12 chain 108223 chr7 159345973 + 79727948 79729152 L1PA4 6152 + 4022 5227 17287 622 0 1 582 chain 119904 chr7 159345973 + 79739118 79740549 LTR12C 1709 + 0 1709 15553 399 1 0 251 0 278 184 1 0 6 2 0 106 0 4 481 chain 58908 chr7 159345973 + 79747866 79748687 LTR12 884 + 0 884 26689 115 0 91 33 41 28 110 2 0 444 14 1 62 chain 3012 chr7 159345973 + 79748018 79748055 LTR12 884 + 33 71 95247 26 0 1 11 chain 172838 chr7 159345973 + 79759665 79761935 L1PA8 5853 + 1234 3501 10959 276 0 1 4 2 0 5 7 9 20 0 1 386 0 1 85 6 0 459 0 4 141 1 6 252 1 0 19 13 5 593 chain 91637 chr7 159345973 + 79801594 79802710 MER11A 1151 + 0 1151 19386 79 0 8 141 1 0 66 0 11 61 0 1 338 0 6 126 7 0 7 1 15 274 0 3 15 chain 53808 chr7 159345973 + 79858969 79859609 L1PA7 6471 + 5828 6466 28282 631 2 0 7 chain 4797 chr7 159345973 + 79863333 79863490 LTR73 568 + 409 568 86714 42 86 88 29 chain 58170 chr7 159345973 + 79875743 79876445 L1PA5 6144 + 4963 5675 26911 48 1 2 278 0 4 23 5 10 227 12 11 81 0 1 27 chain 148612 chr7 159345973 + 79885445 79887054 L1PA2 6032 + 3878 5487 12448 1609 chain 380070 chr7 159345973 + 79915079 79919714 L1P2 5180 + 2 4675 5481 148 2 1 49 1 0 47 3 2 212 1 0 52 29 29 245 1 0 6 1 0 1399 1 3 53 0 2 142 0 4 533 0 3 257 1 0 146 0 11 336 10 6 212 0 1 179 0 16 94 1 4 161 0 8 278 1 0 34 chain 68756 chr7 159345973 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chain 39501 chr7 159345973 + 80734638 80735265 L1PA15 4387 + 3482 4104 35011 7 0 5 6 5 0 102 10 11 117 5 6 72 6 5 4 1 0 10 4 0 6 0 2 56 19 16 26 1 0 149 8 9 13 chain 3639 chr7 159345973 + 80750320 80750410 L1MB3 1562 + 1132 1222 94104 21 16 17 22 11 10 20 chain 142222 chr7 159345973 + 80861778 80864373 L1PB1 5432 + 3149 5413 12917 426 0 3 68 3 0 7 5 9 287 9 7 156 0 1 267 0 1 15 0 6 29 1 0 54 6 7 18 119 205 97 10 1 290 1 2 11 392 4 18 27 21 10 3 1 48 21 19 30 2 1 12 1 0 16 3 0 7 13 5 15 28 23 23 2 1 21 1 0 13 1 0 9 chain 19795 chr7 159345973 + 80952942 80953159 L1PA6 6164 + 4806 5023 56685 217 chain 32843 chr7 159345973 + 80961850 80962285 LOR1b 457 + 0 449 39635 29 0 11 212 0 1 70 5 7 119 chain 41832 chr7 159345973 + 80996442 80996931 L1PA7 6471 + 5805 6294 33466 489 chain 13667 chr7 159345973 + 80996932 80997106 L1PA7 6471 + 6297 6469 64059 10 0 1 151 3 0 10 chain 54231 chr7 159345973 + 81034011 81034718 LTR12_ 688 + 0 688 28140 121 0 25 21 1 0 12 41 0 334 1 0 98 1 0 77 chain 146612 chr7 159345973 + 81042527 81044345 LTR12C 1709 + 0 1709 12567 263 0 1 573 120 0 80 0 6 189 1 0 5 3 1 106 0 4 6 0 3 472 chain 9707 chr7 159345973 + 81043363 81043483 LTR12C 1709 + 877 997 50637 120 chain 299111 chr7 159345973 + 81054390 81059124 L1PA3long 6157 + 2837 6147 6858 835 0 1 1024 0 1 363 1427 0 245 0 1 840 chain 26453 chr7 159345973 + 81073116 81073405 AluYa5 310 + 15 301 47048 108 3 0 178 chain 114325 chr7 159345973 + 81141581 81142997 LTR12C 1709 + 0 1709 16501 12 0 16 183 0 9 244 0 1 4 1 0 185 0 278 101 0 1 78 1 0 5 3 1 106 11 4 399 1 0 82 chain 42758 chr7 159345973 + 81146931 81147406 L1PA3long 6157 + 5681 6156 32913 475 chain 35491 chr7 159345973 + 81154424 81155060 MER4A 717 + 0 700 37729 116 3 0 5 7 10 201 12 3 63 3 0 9 5 21 47 116 175 25 0 1 24 chain 42869 chr7 159345973 + 81162809 81163363 MLT2A2 560 + 0 560 32855 127 5 1 65 18 20 301 0 8 38 chain 123662 chr7 159345973 + 81222228 81223803 THE1B-int 1605 + 0 1600 14905 305 0 1 124 1 26 553 4 3 134 5 4 48 5 6 396 chain 5858 chr7 159345973 + 81248023 81248098 MER2 342 + 140 215 81659 75 chain 25547 chr7 159345973 + 81344102 81344386 L1PA3long 6157 + 5858 6142 48408 284 chain 15028 chr7 159345973 + 81408760 81409056 MER57E1 380 + 47 364 62233 25 0 2 6 33 23 55 9 36 89 30 32 49 chain 387566 chr7 159345973 + 81449648 81454908 L1PB1 5432 + 54 5424 5361 352 1 0 528 0 13 7 19 6 22 4 5 404 75 57 49 5 6 265 1 0 386 8 21 68 1 0 8 5 6 172 2 1 93 1 12 706 0 1 472 0 144 28 0 2 104 8 7 71 12 8 115 0 4 294 8 7 52 1 0 76 3 0 58 2 0 295 1 0 124 1 0 11 1 0 17 2 0 16 16 11 9 2 0 53 20 18 41 2 1 14 28 18 15 8 5 14 2 0 24 1 0 17 8 7 10 1 0 16 1 0 4 chain 38497 chr7 159345973 + 81455848 81456421 MLT2A2 560 + 0 560 35711 60 0 1 71 37 13 248 9 20 47 1 5 56 5 0 39 chain 235106 chr7 159345973 + 81478505 81481597 L1P2 5180 + 35 3177 8596 115 2 1 43 7 6 44 8 7 20 25 26 18 17 0 9 4 25 97 19 0 69 1 0 48 1 0 152 14 42 17 0 1 8 0 15 219 1 0 423 1 0 388 0 1 353 0 2 74 1 3 66 2 0 56 0 2 66 2 0 295 0 10 36 1 16 324 0 4 28 1 0 3 4 0 10 chain 123319 chr7 159345973 + 81509560 81511160 THE1A-int 1579 + 0 1568 14978 37 0 1 42 6 5 488 33 5 159 6 7 139 0 3 546 1 0 130 7 0 6 chain 27177 chr7 159345973 + 81511164 81511518 THE1A 353 + 0 353 46002 109 2 1 119 0 1 4 2 1 118 chain 25103 chr7 159345973 + 81519291 81519652 L1PA8 5853 + 5499 5853 49111 110 5 3 64 6 5 13 2 0 46 2 1 19 6 5 88 chain 8557 chr7 159345973 + 81586275 81586394 MER2 342 + 124 246 73546 11 4 7 104 chain 58846 chr7 159345973 + 81631621 81632281 L1PA4 6152 + 5489 6152 26723 232 4 7 424 chain 3294 chr7 159345973 + 81669535 81669921 LTR33A_ 513 + 125 508 97067 21 219 215 21 97 98 28 chain 14943 chr7 159345973 + 81696821 81697163 L1PB1 5432 + 5114 5424 62328 20 1 0 13 16 11 11 2 0 51 2 1 11 12 11 37 1 0 16 3 0 7 14 5 16 11 8 14 2 0 20 5 4 21 1 0 13 1 0 16 1 0 4 chain 57944 chr7 159345973 + 81844450 81845173 L1PA7 6471 + 4842 5554 26981 132 0 1 44 14 1 126 5 6 159 0 1 20 1 0 222 chain 126915 chr7 159345973 + 81879877 81881527 L1P3 4156 + 2474 4139 14425 42 0 4 178 1 0 11 8 5 172 9 13 194 0 4 328 7 8 67 1 0 46 0 4 17 0 5 74 1 2 452 9 7 6 1 0 26 chain 38762 chr7 159345973 + 81901188 81901648 LTR2 463 + 0 463 35522 127 0 3 333 chain 103383 chr7 159345973 + 81911293 81912465 L1P1 4361 + 2528 3698 17903 752 0 1 229 1 0 168 1 0 5 1 0 15 chain 11242 chr7 159345973 + 81974871 81975031 L1PA8 5853 + 5695 5853 68174 49 2 1 15 3 2 91 chain 109967 chr7 159345973 + 81977347 81978734 L1PA8 5853 + 4447 5849 17081 46 0 4 201 0 1 288 0 4 19 7 5 356 0 3 85 2 0 60 0 7 38 1 0 44 2 0 48 1 0 22 2 1 8 0 6 47 2 1 21 1 0 14 0 1 72 chain 47812 chr7 159345973 + 82055379 82055915 L1PA4 6152 + 5607 6143 30357 536 chain 39894 chr7 159345973 + 82059707 82060139 L1PA4 6152 + 5702 6134 34742 432 chain 23776 chr7 159345973 + 82240689 82240978 AluSc 308 + 9 291 51150 22 6 0 226 1 0 34 chain 5831 chr7 159345973 + 82290078 82290158 MADE1 96 + 0 96 81781 46 1 17 33 chain 46459 chr7 159345973 + 82295762 82296269 L1PA3long 6157 + 5650 6157 30861 507 chain 21277 chr7 159345973 + 82386475 82386735 AluSp 311 + 11 284 54795 34 0 14 73 1 0 152 chain 116101 chr7 159345973 + 82400436 82401711 L1PA3long 6157 + 4877 6152 16213 1275 chain 57315 chr7 159345973 + 82500000 82500760 LTR12C 1709 + 612 1709 27155 42 0 119 64 1 0 197 0 125 56 20 13 164 0 102 133 1 0 82 chain 5777 chr7 159345973 + 82557517 82557724 L1PA15-16 3068 + 2308 2485 82025 36 4 0 13 84 64 21 2 0 15 6 3 18 1 0 7 chain 208534 chr7 159345973 + 82610049 82612336 L1PA3long 6157 + 3869 6157 9399 1517 0 2 439 1 0 330 chain 487380 chr7 159345973 + 82633099 82648564 L1PA7 6471 + 0 6469 3482 207 2 0 5 0 2 26 0 10 359 3 4 134 1 0 7 0 11 5 1 0 49 1 0 4 0 1 1131 1 0 147 0 1 450 0 1 120 0 1 204 12 96 111 11 15 11 0 1 86 0 1 15 39 40 191 0 4 53 2 6 97 0 1 288 9139 0 36 2 0 18 0 1 41 0 2 681 0 2 137 0 5 416 5 14 351 0 4 18 1 2 177 1 0 669 chain 53631 chr7 159345973 + 82636876 82637573 LTR12_ 688 + 0 688 28354 25 5 0 65 25 0 63 1 25 191 1 0 73 1 0 71 1 0 175 chain 368735 chr7 159345973 + 82637594 82642718 HERV9-int 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MER20 218 + 59 194 79674 17 10 15 61 17 24 18 chain 152551 chr7 159345973 + 82891838 82893581 L1PA4 6152 + 4409 6152 12197 102 8 0 793 0 4 246 0 1 485 0 1 102 0 2 7 chain 68333 chr7 159345973 + 82901823 82902586 L1PA4 6152 + 5388 6151 24377 763 chain 8029 chr7 159345973 + 82919145 82919246 L1PA7 6471 + 6368 6465 74817 90 4 0 7 chain 12763 chr7 159345973 + 82992564 82992758 L1PA8 5853 + 5663 5853 65497 16 1 0 14 12 11 36 2 1 19 1 0 93 chain 5997 chr7 159345973 + 82999016 83000441 L1MCa 1829 + 819 1488 81085 50 1317 562 53 1 0 4 chain 544979 chr7 159345973 + 83024097 83030116 L1PA3long 6157 + 4 6152 1032 148 0 1 628 3 133 4393 3 1 844 chain 3996 chr7 159345973 + 83052178 83052230 L1MC2 1988 + 1849 1906 91475 46 0 5 6 chain 30975 chr7 159345973 + 83086867 83087232 L1PA5 6144 + 5783 6144 41148 224 5 1 136 chain 96954 chr7 159345973 + 83124707 83125903 SVA_B 1603 + 0 1603 18660 21 15 0 15 24 8 20 5 10 445 3 233 75 0 201 135 0 4 430 2 0 6 chain 18628 chr7 159345973 + 83138756 83138982 L1PA7 6471 + 6239 6466 57967 89 0 1 137 chain 22870 chr7 159345973 + 83218077 83218418 THE1A 353 + 0 341 52548 29 0 7 46 2 0 6 19 17 5 1 0 9 2 1 158 1 0 63 chain 124859 chr7 159345973 + 83218433 83219998 THE1A-int 1579 + 0 1572 14730 33 1 0 4 0 1 75 1 4 421 11 12 444 0 2 278 0 1 297 chain 26962 chr7 159345973 + 83220005 83220347 THE1A 353 + 0 341 46319 109 2 1 231 chain 32589 chr7 159345973 + 83223458 83223830 L1PA4 6152 + 5780 6152 39877 354 0 3 9 3 0 6 chain 21172 chr7 159345973 + 83265403 83265657 L1PA8A 6298 + 5998 6252 54920 254 chain 134480 chr7 159345973 + 83291018 83292943 L1PA4 6152 + 4213 6151 13598 245 0 9 168 1 0 669 0 4 64 0 1 445 1 0 322 0 1 10 chain 57544 chr7 159345973 + 83298744 83299376 L1PA2 6032 + 5400 6032 27093 632 chain 523667 chr7 159345973 + 83341318 83347749 L1PA7 6471 + 0 6469 2104 187 10 11 189 9 0 24 0 1 1026 1 4 310 0 1 4 1 3 6 4 0 404 0 1 468 5 8 403 0 2 44 0 4 384 0 2 6 2 0 346 19 20 528 6 8 97 0 1 70 0 1 11 1 0 234 1 9 78 0 1 724 1 4 251 1 2 54 0 18 508 2 0 12 chain 24904 chr7 159345973 + 83430476 83430843 L1PA8 5853 + 5492 5853 49422 72 1 0 46 2 0 72 1 0 11 1 0 6 4 5 32 8 7 17 8 7 86 chain 40957 chr7 159345973 + 83459667 83460118 LTR7 482 + 0 482 33998 264 0 31 187 chain 291493 chr7 159345973 + 83460120 83463693 HERVH-int 3825 + 0 3816 7087 212 0 11 17 0 5 290 1 54 14 7 1 14 1 0 12 4 1 6 65 0 54 0 20 18 2 1 49 1 0 444 15 0 195 0 1 261 6 36 290 0 4 1032 1 2 76 8 218 478 chain 38241 chr7 159345973 + 83464936 83465374 LTR7 482 + 0 473 35880 38 0 2 46 0 2 147 0 31 207 chain 20339 chr7 159345973 + 83472712 83473089 THE1C 375 + 0 374 55962 14 2 0 49 22 23 100 7 8 18 19 21 17 6 0 77 17 18 29 chain 43878 chr7 159345973 + 83513855 83514433 MER41A 554 + 0 554 32205 325 7 0 81 0 2 106 19 0 40 chain 78758 chr7 159345973 + 83552172 83553260 MER11A 1151 + 0 1151 21928 55 0 99 76 1 0 64 4 0 149 0 1 91 0 1 101 2 0 43 0 1 129 0 26 26 43 0 22 18 0 36 0 1 9 0 1 49 5 6 165 chain 26418 chr7 159345973 + 83564856 83565157 L1P3 4156 + 3465 3766 47096 301 chain 28043 chr7 159345973 + 83565167 83565503 L1PA8A 6298 + 5953 6290 44795 108 0 1 228 chain 39457 chr7 159345973 + 83606351 83606775 L1HS 6032 + 5608 6032 35037 424 chain 148986 chr7 159345973 + 83620355 83622323 L1PA11 4918 + 2527 4504 12420 350 0 3 786 1 0 100 0 4 126 0 1 211 0 1 185 6 8 29 9 11 51 2 1 13 4 5 61 6 4 10 2 1 16 chain 17276 chr7 159345973 + 83637455 83637780 THE1C 375 + 0 336 59486 15 2 0 32 0 6 17 15 16 9 0 1 28 20 0 7 1 21 30 4 5 16 16 20 113 chain 130685 chr7 159345973 + 83673136 83674738 LTR12C 1709 + 0 1709 13957 436 0 1 50 0 6 157 0 119 68 1 0 75 0 2 114 18 2 82 1 0 5 3 1 106 0 4 101 4 0 176 1 0 204 chain 3382 chr7 159345973 + 83760962 83761112 MER8 282 + 102 256 96274 19 75 80 31 10 9 15 chain 12096 chr7 159345973 + 83773603 83773802 L1PA8 5853 + 5651 5847 66672 31 1 0 6 8 7 34 1 2 9 2 1 18 3 2 86 chain 40501 chr7 159345973 + 83773917 83774426 L1PA6 6164 + 5658 6161 34306 25 1 0 306 2 4 135 9 0 23 0 2 8 chain 3977 chr7 159345973 + 83826745 83826790 MADE1 96 + 1 46 91591 45 chain 5610 chr7 159345973 + 83846445 83846515 MER3 215 + 97 167 82760 70 chain 20681 chr7 159345973 + 83980381 83980624 AluSc 308 + 57 300 55524 243 chain 544554 chr7 159345973 + 84062409 84068436 L1PA2 6032 + 3 6032 1052 68 1 2 183 1 0 199 3 4 2109 0 1 3297 5 0 8 0 5 153 chain 105541 chr7 159345973 + 84079191 84080357 L1PA3long 6157 + 4985 6152 17615 978 0 1 188 chain 11644 chr7 159345973 + 84106292 84106459 Tigger3a 397 + 148 323 67491 11 2 12 24 1 0 48 1 0 80 chain 212118 chr7 159345973 + 84150242 84152701 L1PA3long 6157 + 13 6157 9272 4 0 1 134 7 8 204 5 6 398 8 136 666 0 3549 191 0 4 838 0 1 4 chain 38484 chr7 159345973 + 84298708 84299220 MLT2A2 560 + 0 505 35726 204 0 1 107 1 2 128 11 2 61 chain 37931 chr7 159345973 + 84378273 84378720 L1PA7 6471 + 6024 6469 36116 260 0 1 174 3 0 10 chain 540643 chr7 159345973 + 84402964 84409055 L1PA4 6152 + 54 6152 1302 478 0 1 202 0 1 2134 4 1 818 2 0 277 0 1 376 0 8 748 3 4 124 0 1 590 1 0 334 chain 2949 chr7 159345973 + 84425911 84425974 L1PB3 3668 + 3505 3566 100371 22 20 18 21 chain 407832 chr7 159345973 + 84517739 84522417 L1PA5 6144 + 1354 6047 5048 487 0 1 363 3 6 1194 6 8 534 1 0 305 0 3 706 0 1 30 1 3 295 0 5 409 7 6 337 chain 75270 chr7 159345973 + 84581635 84582476 L1PA5 6144 + 5125 5966 22778 168 0 1 440 1 0 232 chain 82781 chr7 159345973 + 84593071 84594080 L1PA7 6471 + 5461 6469 21066 101 0 1 52 1 0 34 0 1 60 1 0 21 4 3 735 chain 4536 chr7 159345973 + 84703164 84703214 MER121 330 + 128 178 88132 50 chain 57898 chr7 159345973 + 84707579 84708203 L1PA2 6032 + 5408 6032 26998 624 chain 40582 chr7 159345973 + 84710658 84711099 L1PA2 6032 + 5591 6032 34237 441 chain 251755 chr7 159345973 + 84725892 84729052 L1PA7 6471 + 3300 6470 8183 197 4 0 312 0 4 126 0 10 633 0 3 81 0 8 442 2 0 103 0 5 382 0 1 11 13 0 501 4 0 17 8 9 175 2 3 147 chain 73105 chr7 159345973 + 84733828 84734772 L1PA8A 6298 + 5340 6291 23297 149 7 10 312 14 10 53 0 6 87 2 0 99 0 4 221 chain 8642 chr7 159345973 + 84777709 84777818 L1PA7 6471 + 5547 5655 73367 76 1 0 32 chain 57939 chr7 159345973 + 84777818 84778521 L1PA7 6471 + 5656 6359 26984 703 chain 31982 chr7 159345973 + 84779615 84780070 L1PBa 3878 + 1519 1978 40358 48 30 29 5 0 2 19 0 1 11 0 1 329 1 2 12 chain 8190 chr7 159345973 + 84792675 84792780 L1PA7 6471 + 6197 6302 74434 105 chain 12737 chr7 159345973 + 84792780 84792926 L1PA7 6471 + 6313 6459 65549 146 chain 19090 chr7 159345973 + 84871463 84871795 L1PA8 5853 + 5552 5853 57453 12 1 0 45 35 0 23 10 20 26 2 1 10 1 0 4 3 2 45 2 1 17 2 1 94 chain 90109 chr7 159345973 + 84880387 84881736 LTR12C 1709 + 0 1709 19662 192 16 2 15 0 2 42 42 49 36 0 43 83 0 4 182 0 119 68 4 0 116 7 35 16 35 114 97 20 13 35 0 2 143 5 111 86 5 1 12 8 7 84 chain 8652 chr7 159345973 + 84891478 84891726 Tigger4b 360 + 82 333 73348 33 24 35 5 1 0 47 80 72 23 1 0 6 0 2 28 chain 207220 chr7 159345973 + 84955220 84957609 L1PA5 6144 + 3750 6139 9453 602 0 2 304 1 0 636 1 0 845 chain 5619 chr7 159345973 + 85008695 85008773 Tigger4 2445 + 2232 2308 82713 38 1 0 14 2 1 23 chain 24131 chr7 159345973 + 85043575 85043941 THE1B 368 + 0 368 50607 15 2 0 22 0 5 130 3 2 18 0 2 100 1 0 8 29 28 38 chain 20629 chr7 159345973 + 85121978 85122243 L1PA7 6471 + 6201 6470 55594 114 0 1 139 1 4 11 chain 21126 chr7 159345973 + 85135391 85135656 L1PA5 6144 + 5870 6134 54981 127 1 0 20 2 0 5 1 3 109 chain 90417 chr7 159345973 + 85157793 85158861 MER11C 1089 + 0 1069 19606 599 0 1 469 chain 18938 chr7 159345973 + 85177847 85178209 THE1C 375 + 0 360 57608 13 2 0 6 1 2 26 69 67 71 0 12 7 14 2 112 0 1 41 chain 6922 chr7 159345973 + 85179960 85180040 THE1C-int 1605 + 1488 1568 77874 80 chain 58897 chr7 159345973 + 85196917 85197701 MER4E1 777 + 0 770 26695 24 0 1 69 21 18 319 0 6 25 1 2 59 9 0 19 10 0 228 chain 52556 chr7 159345973 + 85240877 85241769 L1PB1 5432 + 4528 5380 28710 79 16 14 281 5 7 42 19 10 145 28 11 29 1 0 10 2 0 3 2 0 9 2 0 7 8 10 34 2 0 17 1 0 24 0 16 4 1 0 15 4 0 7 16 6 16 27 22 24 2 0 10 chain 548374 chr7 159345973 + 85249854 85255879 L1PA2 6032 + 0 6029 842 436 3 1 1642 0 4 1589 0 1 804 0 1 1551 chain 77370 chr7 159345973 + 85439061 85440151 L1PA8 5853 + 4764 5852 22226 5 0 3 237 7 0 74 25 26 42 0 7 288 4 5 30 0 3 80 1 0 46 2 0 69 1 0 8 2 1 56 1 0 16 2 1 12 11 9 66 1 0 4 chain 33920 chr7 159345973 + 85478595 85479081 MER41A 554 + 0 554 38770 235 1 0 26 3 63 101 0 1 41 32 39 10 0 1 37 chain 35629 chr7 159345973 + 85620373 85620810 L1PA6 6164 + 5725 6162 37645 273 3 5 126 2 0 33 chain 58591 chr7 159345973 + 85672271 85673002 LTR12 884 + 0 884 26790 25 1 0 162 0 157 34 2 0 398 2 1 107 chain 64775 chr7 159345973 + 85683734 85684512 LTR17 781 + 0 781 25244 232 0 1 94 0 1 37 2 3 413 chain 33589 chr7 159345973 + 85703804 85704332 MER41C 542 + 0 535 39008 49 0 1 131 0 1 51 0 3 79 6 0 14 85 93 113 chain 82353 chr7 159345973 + 85730929 85731983 MER11C 1089 + 0 1063 21166 249 0 1 25 0 1 37 0 4 215 64 63 93 0 4 7 1 0 38 0 1 127 0 1 54 1 0 143 chain 331806 chr7 159345973 + 85753068 85757273 L1PA7 6471 + 2274 6469 6185 367 7 0 59 1 2 128 0 2 119 62 7 18 1 3 148 1 8 210 0 1 92 4 0 11 1 5 48 1 0 334 3 1 255 1 2 628 0 1 49 0 42 139 1 0 77 0 1 253 0 1 336 1 0 88 0 1 83 1 0 300 0 1 354 9 6 15 chain 5845 chr7 159345973 + 85834299 85834471 MLT2B2 565 + 391 555 81715 48 87 79 37 chain 8923 chr7 159345973 + 85857315 85857453 THE1B-int 1605 + 1464 1605 72732 15 0 3 44 8 7 58 1 2 12 chain 9854 chr7 159345973 + 85885722 85885861 L1PA8 5853 + 5716 5853 70712 24 2 1 19 2 1 92 chain 10906 chr7 159345973 + 85919961 85920096 L1PREC2 3366 + 385 519 68687 83 1 0 51 chain 4169 chr7 159345973 + 85937825 85937877 L1MA8 2339 + 2166 2218 90323 52 chain 44828 chr7 159345973 + 85966726 85967263 L1PA7 6471 + 5873 6411 31684 258 0 1 279 chain 4003 chr7 159345973 + 85967264 85967310 L1PA7 6471 + 6413 6459 91430 46 chain 198005 chr7 159345973 + 85990798 85992990 L1PA3long 6157 + 3963 6156 9775 909 0 1 1283 chain 5816 chr7 159345973 + 86000321 86000400 L1MA5 2750 + 1277 1355 81845 20 1 0 58 chain 93381 chr7 159345973 + 86039463 86040475 L1PA2 6032 + 5020 6032 19131 1012 chain 17875 chr7 159345973 + 86062649 86063009 THE1B 368 + 16 367 58799 24 8 13 78 80 71 105 18 13 47 chain 4610 chr7 159345973 + 86064791 86064853 THE1B 368 + 201 290 87750 53 0 27 9 chain 4126 chr7 159345973 + 86064905 86064950 THE1B 368 + 323 368 90611 45 chain 69362 chr7 159345973 + 86075809 86076581 L1PA4 6152 + 5379 6151 24150 772 chain 438169 chr7 159345973 + 86088189 86093848 HERVL-int 5654 + 0 5654 4603 421 2 0 169 0 3 273 0 5 65 5 4 27 0 1 4 4 5 99 2 1 169 5 6 47 0 1 255 0 1 10 4 6 108 16 15 93 2 1 5 0 1 1160 10 12 381 0 1 617 0 2 65 0 4 633 0 1 316 11 17 198 57 28 124 23 21 279 chain 26288 chr7 159345973 + 86153922 86154213 L1PA3long 6157 + 5855 6146 47291 291 chain 215882 chr7 159345973 + 86160690 86163475 L1PA8A 6298 + 3486 6290 9151 5 0 3 118 4 5 254 0 1 259 0 1 113 0 1 220 0 1 227 0 1 110 0 1 13 2 0 217 0 5 6 9 4 380 0 9 46 1 0 13 2 3 68 0 2 718 chain 5683 chr7 159345973 + 86164230 86164298 LTR32 486 + 15 83 82417 68 chain 499897 chr7 159345973 + 86174045 86180045 L1PA5 6144 + 64 6077 3130 57 0 14 18 3 15 105 1 22 874 9 0 548 1 2 194 3 9 388 15 5 123 6 0 101 0 6 739 0 1 331 4 0 66 1 0 42 0 1 260 0 1 91 0 1 147 0 1 4 1 0 520 22 0 669 0 1 657 chain 224787 chr7 159345973 + 86203487 86206337 L1PA3long 6157 + 3621 6153 8898 140 5 6 560 325 0 134 6 5 286 0 8 1144 1 0 249 chain 335161 chr7 159345973 + 86229480 86233667 L1PA5 6144 + 2273 6143 6141 545 319 0 388 0 1 183 1 2 617 1 0 364 0 1 320 0 1 1186 5 6 243 3 1 12 chain 231768 chr7 159345973 + 86254210 86256790 L1PA4 6152 + 3573 6152 8696 107 3 0 428 0 1 71 0 1 1971 chain 75911 chr7 159345973 + 86266819 86267773 L1PA7 6471 + 5496 6468 22603 81 0 2 22 0 8 91 0 2 196 0 5 233 0 1 184 6 5 123 0 1 18 chain 546284 chr7 159345973 + 86340208 86346233 L1PA2 6032 + 3 6028 954 253 1 0 5402 0 1 221 1 0 6 6 7 135 chain 20958 chr7 159345973 + 86368693 86368928 L1PA5 6144 + 5389 5623 55181 216 1 0 18 chain 43972 chr7 159345973 + 86368935 86369439 L1PA5 6144 + 5631 6135 32146 504 chain 28627 chr7 159345973 + 86370464 86370818 L1PA7 6471 + 6115 6465 43905 343 4 0 7 chain 367528 chr7 159345973 + 86375404 86379683 L1P1 4361 + 1 4328 5702 110 0 14 11 11 25 81 0 1 1212 1 0 38 0 1 867 1 2 60 0 3 142 1 4 125 0 5 365 0 4 8 1 5 424 1 2 637 1 0 158 1 0 23 chain 135085 chr7 159345973 + 86413043 86414537 L1PA3long 6157 + 4663 6157 13536 1494 chain 120414 chr7 159345973 + 86440385 86441810 LTR12C 1709 + 0 1707 15459 320 13 13 244 2 1 72 0 278 184 1 0 5 7 5 102 0 4 21 0 1 139 0 3 315 chain 27798 chr7 159345973 + 86443976 86444347 THE1B 368 + 0 368 45186 169 1 0 26 3 0 51 0 1 55 10 10 56 chain 85072 chr7 159345973 + 86524286 86525235 L1PA4 6152 + 4240 5192 20607 208 0 3 741 chain 27777 chr7 159345973 + 86525483 86525780 AluYa5 310 + 0 296 45214 132 1 0 164 chain 19988 chr7 159345973 + 86537972 86538324 L1PA14 3548 + 3118 3456 56401 13 2 0 6 1 0 84 1 0 111 14 9 32 46 41 42 chain 173997 chr7 159345973 + 86548416 86550447 L1P2 5180 + 1960 4254 10895 1007 0 263 379 1 0 402 0 1 242 chain 363064 chr7 159345973 + 86550850 86555075 L1PA6 6164 + 1920 6159 5769 412 1 2 555 0 1 308 0 1 1195 0 1 831 0 11 535 0 1 326 0 2 3 4 0 55 chain 480678 chr7 159345973 + 86567065 86573314 L1PA7 6471 + 5 6457 3614 48 18 19 129 11 10 75 0 2 41 18 188 96 1 2 110 0 10 467 2 0 5 1 3 169 0 1 57 12 15 671 1 2 42 1 2 346 4 6 120 21 5 196 0 1 426 1 3 39 4 10 172 0 1 9 1 0 17 2 3 54 0 1 22 4 6 229 0 1 454 0 2 903 1 2 28 0 1 202 6 7 182 1 4 71 0 1 654 0 1 66 0 4 39 chain 5981 chr7 159345973 + 86579398 86579464 L1PA6 6164 + 5007 5073 81158 66 chain 94037 chr7 159345973 + 86579464 86580551 L1PA6 6164 + 5074 6162 19034 259 0 1 828 chain 37963 chr7 159345973 + 86587147 86587612 L1PA7 6471 + 1645 2113 36099 306 1 4 158 chain 25349 chr7 159345973 + 86587612 86587944 L1PA7 6471 + 2124 2455 48710 225 6 5 101 chain 125684 chr7 159345973 + 86587945 86589468 L1PA7 6471 + 2455 3981 14603 166 5 0 11 5 0 7 0 3 316 0 1 213 0 1 185 0 1 77 0 3 57 1 0 80 0 3 98 0 1 260 0 1 42 chain 5815 chr7 159345973 + 86623424 86623498 MER54B 801 + 726 801 81851 63 0 1 11 chain 3283 chr7 159345973 + 86634130 86634165 MLT1I 406 + 227 262 97162 35 chain 8790 chr7 159345973 + 86698344 86698442 LTR15 485 + 358 456 73010 98 chain 30212 chr7 159345973 + 86722217 86722567 L1PA7 6471 + 5925 6275 41841 350 chain 14687 chr7 159345973 + 86722582 86722758 L1PA7 6471 + 6287 6467 62687 124 0 4 52 chain 75143 chr7 159345973 + 86799973 86800939 L1PA10 4194 + 2265 3237 22807 254 0 2 90 20 18 69 0 3 48 0 1 345 0 1 97 0 1 43 chain 15183 chr7 159345973 + 86979824 86979997 MER107 203 + 0 173 62060 173 chain 512938 chr7 159345973 + 86981689 86988347 L1PA6 6164 + 0 6157 2624 280 0 1 4 2 1 179 1 0 749 0 1 535 0 1 572 11 6 67 1 4 28 1 6 77 12 11 214 0 1 452 0 1 37 0 1 229 8 1 243 0 2 245 2 3 27 221 0 273 289 0 120 0 4 274 1 0 43 0 2 1389 7 9 65 chain 27231 chr7 159345973 + 86986162 86986448 AluYa5 310 + 15 301 45927 286 chain 14255 chr7 159345973 + 87006364 87006535 L1PA7 6471 + 6300 6469 63258 159 2 0 10 chain 16676 chr7 159345973 + 87024725 87024908 L1PA4 6152 + 3310 3493 60180 183 chain 20186 chr7 159345973 + 87038526 87039756 L1MA2 4263 + 1008 2267 12064 40 3 4 350 0 7 14 0 3 16 0 6 6 0 3 75 0 4 212 8 12 123 5 6 73 0 1 271 7 6 27 chain 548601 chr7 159345973 + 87039756 87045768 L1PA2 6032 + 0 6029 830 257 1 0 440 0 7 203 0 1 856 0 2 430 1 2 504 1 2 1273 0 2 250 0 4 1796 chain 17773 chr7 159345973 + 87046880 87047963 L1MA2 4263 + 2957 4047 12064 122 1 0 149 0 1 48 0 1 225 0 9 54 1 0 18 6 2 76 1 0 42 0 5 27 0 3 52 18 15 148 23 21 72 chain 105439 chr7 159345973 + 87096717 87097897 L1PA4 6152 + 4949 6143 17623 213 0 11 402 0 1 427 0 1 126 0 1 12 chain 26076 chr7 159345973 + 87113876 87114241 THE1B 368 + 0 368 47612 172 7 6 22 8 4 102 7 15 47 chain 46880 chr7 159345973 + 87132020 87132758 L1MA2 4263 + 3387 4114 30705 58 2 0 15 3 4 120 6 2 77 11 22 9 1 0 4 5 1 97 13 10 56 0 1 93 11 9 82 18 11 45 2 1 10 chain 13067 chr7 159345973 + 87186631 87186849 Tigger3a 397 + 158 377 64994 97 15 11 50 23 28 33 chain 484124 chr7 159345973 + 87238754 87244157 L1PA3long 6157 + 620 6156 3550 154 6 130 1546 3 1 82 4 8 11 0 3 1389 0 1 15 1 0 390 0 4 1802 chain 28716 chr7 159345973 + 87244177 87244487 AluYa5 310 + 0 309 43766 132 1 0 177 chain 116672 chr7 159345973 + 87244963 87246483 THE1A-int 1579 + 2 1546 16106 88 0 1 146 8 9 31 14 31 247 0 1 92 2 1 6 0 1 329 9 11 259 4 0 92 0 5 125 0 1 68 chain 26567 chr7 159345973 + 87246515 87247164 THE1A 353 + 0 353 46877 15 2 0 24 0 1 69 4 3 177 294 0 64 chain 312490 chr7 159345973 + 87256277 87266501 L1PA7 6471 + 2388 6465 6562 88 4 5 22 1 0 16 0 4 107 15 17 305 0 1 84 0 1 240 1 0 206 3 2 17 1 0 67 0 4 26 28 21 271 3 0 50 6155 0 235 0 3 362 0 1 641 7 11 107 0 1 28 17 16 966 0 1 151 chain 452484 chr7 159345973 + 87278706 87284372 HERVL-int 5654 + 0 5654 4318 325 0 2 277 0 1 41 6 5 186 0 1 16 12 17 26 4 0 152 0 6 669 0 2 735 3 0 43 7 8 206 5 4 97 0 1 61 0 1 534 0 1 47 1 0 5 0 2 621 0 1 122 6 0 278 7 6 36 68 19 55 6 3 7 0 4 59 0 1 26 0 22 68 0 1 630 10 11 151 0 4 58 chain 25340 chr7 159345973 + 87284372 87284743 MLT2A1 477 + 0 383 48730 169 4 1 11 0 1 22 0 1 93 0 29 9 27 11 36 chain 107905 chr7 159345973 + 87288542 87289862 LTR12C 1709 + 0 1702 17340 649 0 280 143 0 2 34 1 0 8 5 3 105 0 4 183 1 0 28 0 101 85 1 0 77 chain 7544 chr7 159345973 + 87290506 87290595 THE1A-int 1579 + 1255 1344 76018 89 chain 2015 chr7 159345973 + 87290595 87290620 THE1A-int 1579 + 1345 1371 106215 7 0 1 18 chain 15032 chr7 159345973 + 87290635 87290820 THE1A-int 1579 + 1387 1572 62225 185 chain 27543 chr7 159345973 + 87290829 87291181 THE1A 353 + 2 353 45523 104 5 4 243 chain 41673 chr7 159345973 + 87300172 87301001 L1PA15 4387 + 3574 4366 33576 189 66 61 6 2 0 61 3 1 41 1 0 32 1 0 56 32 33 46 10 9 21 1 0 54 6 5 19 22 17 18 5 7 17 7 4 43 3 1 14 15 0 27 1 0 10 chain 4190 chr7 159345973 + 87302080 87302130 MER5B 177 + 20 70 90193 50 chain 520585 chr7 159345973 + 87304062 87310552 L1PA7 6471 + 0 6470 2250 136 31 35 240 0 1 654 1 2 30 0 1 46 8 10 242 0 3 760 0 4 439 9 0 29 33 0 843 13 11 42 35 16 62 0 1 229 0 1 135 1 2 34 0 1 57 7 13 181 0 1 932 0 4 421 1 3 79 1 4 42 1 2 148 9 12 23 1 2 11 0 1 377 0 1 147 chain 217596 chr7 159345973 + 87319584 87322209 L1PA7 6471 + 3839 6468 9107 256 3 4 216 1 2 591 2 0 18 0 1 51 17 17 359 1 0 269 0 6 830 2 0 9 chain 5337 chr7 159345973 + 87388195 87388263 L1PA7 6471 + 4880 4948 84020 68 chain 132400 chr7 159345973 + 87388265 87389780 L1PA7 6471 + 4949 6467 13790 672 0 3 657 0 1 167 1 0 18 chain 528869 chr7 159345973 + 87464899 87471363 L1PA5 6144 + 3 6132 1886 484 25 0 481 0 1 1477 3 1 55 0 6 72 0 1 890 0 12 256 339 0 297 0 1 40 0 1 263 0 4 786 2 0 166 10 14 549 0 3 269 chain 22628 chr7 159345973 + 87468654 87468932 AluYk4 311 + 4 283 52944 127 1 2 150 chain 102962 chr7 159345973 + 87484991 87486327 L1PA8 5853 + 4493 5853 17956 96 1 0 123 0 6 16 0 1 133 0 1 48 0 27 66 2 0 554 1 0 44 2 0 70 11 10 8 1 0 44 3 2 15 8 6 90 chain 9175 chr7 159345973 + 87507824 87507932 L1PA16 3655 + 3430 3538 72180 108 chain 24213 chr7 159345973 + 87524453 87524746 L1PA4 6152 + 5860 6152 50472 136 7 6 150 chain 23609 chr7 159345973 + 87684495 87684775 AluSc 308 + 29 308 51414 102 1 0 177 chain 9637 chr7 159345973 + 87727270 87727387 L1PA5 6144 + 3800 3918 71189 95 0 1 22 chain 82492 chr7 159345973 + 87794460 87796158 L1MA2 4263 + 2735 4102 21124 149 19 18 76 6 9 17 0 2 42 33 36 39 27 28 15 1 0 6 19 29 85 2 0 88 4 1 106 7 6 56 6 8 23 17 12 76 1 0 144 3 0 66 333 6 80 21 20 80 7 0 44 chain 339166 chr7 159345973 + 87819290 87823048 L1PA4 6152 + 2390 6151 6085 1607 1 0 1307 0 4 843 chain 106795 chr7 159345973 + 87824530 87826119 THE1B-int 1605 + 0 1600 17459 73 1 0 323 3 5 23 0 26 63 221 0 36 0 3 52 1 0 4 0 1 5 0 199 627 0 1 43 0 2 114 chain 77344 chr7 159345973 + 87857516 87858560 MER11A 1151 + 0 1132 22234 48 7 106 140 4 0 94 0 1 284 11 14 150 42 25 55 0 1 6 1 0 47 0 1 28 1 0 70 0 6 56 chain 48229 chr7 159345973 + 87866508 87867075 LTR14C 587 + 0 587 30206 178 0 1 140 0 17 10 0 2 239 chain 5850 chr7 159345973 + 87898357 87898461 L1MB3 1562 + 6 108 81693 14 2 1 63 11 10 14 chain 6766 chr7 159345973 + 87924575 87924672 L1PBa 3878 + 3147 3242 78425 30 4 5 38 3 0 22 chain 299097 chr7 159345973 + 87928619 87932866 L1PB1 5432 + 1171 5422 6859 35 1 0 98 4 5 10 0 1 67 33 36 119 11 15 239 5 6 168 0 1 179 0 1 344 5 0 116 8 3 6 0 5 34 9 10 55 11 7 88 2 1 114 0 6 315 0 1 8 6 17 199 0 2 51 1 2 166 3 2 6 0 1 18 2 5 90 12 9 158 0 5 159 10 14 162 0 1 44 3 4 71 1 2 158 0 1 15 9 0 13 1 0 165 0 9 290 3 2 8 2 1 20 1 0 8 3 2 13 23 17 44 5 4 15 1 0 45 1 0 4 0 1 9 2 0 6 15 6 18 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 26370 chr7 159345973 + 87966867 87967237 THE1C 375 + 0 375 47162 184 29 31 65 6 7 5 0 2 81 chain 181892 chr7 159345973 + 87972026 87974097 L1PA4 6152 + 4082 6151 10502 660 1 0 56 9 1 283 0 2 20 12 12 190 0 4 698 1 2 141 chain 248005 chr7 159345973 + 88006164 88008906 L1PA3long 6157 + 3407 6157 8287 950 7 11 1646 1 5 138 chain 60047 chr7 159345973 + 88051021 88051713 L1PA5 6144 + 5453 6141 26358 74 0 1 607 5 0 6 chain 541774 chr7 159345973 + 88077364 88083492 L1PA4 6152 + 6 6152 1221 20 0 1 719 8 0 204 0 4 634 0 1 1158 0 1 461 2 1 257 1 8 205 0 1 670 0 4 309 7 8 1467 0 7 6 chain 190764 chr7 159345973 + 88157911 88161639 L1PREC2 3366 + 233 3249 10078 15 1 0 5 2 1 6 1 0 9 1 0 22 1 2 67 1 0 5 7 8 32 5 4 59 1 0 374 14 10 110 1 0 348 3 6 43 9 10 74 3 4 46 13 11 94 1 0 480 0 3 163 0 1 5 2 1 395 0 1 69 4 6 10 11 51 16 9 8 43 1 0 4 3 0 11 54 41 14 5 3 25 617 4 11 22 8 35 6 4 26 244 157 22 10 5 21 9 0 8 chain 43881 chr7 159345973 + 88160608 88161116 L1PA5 6144 + 5627 6138 32204 258 0 1 182 4 6 64 chain 20444 chr7 159345973 + 88204264 88204639 THE1D 372 + 0 372 55836 76 13 0 8 5 1 50 0 4 27 29 32 38 16 18 45 0 4 29 13 14 26 chain 47164 chr7 159345973 + 88222589 88223110 L1PA2 6032 + 4607 5128 30588 521 chain 3385 chr7 159345973 + 88297468 88297660 MER53 195 + 1 195 96226 31 139 141 22 chain 29263 chr7 159345973 + 88304019 88304345 L1PA3long 6157 + 5831 6157 42946 326 chain 27054 chr7 159345973 + 88320289 88320669 LTR7B 505 + 0 491 46189 105 0 10 56 1 0 4 13 77 59 0 41 85 18 17 26 2 0 11 chain 379246 chr7 159345973 + 88380614 88385494 HERVL-int 5654 + 1047 5654 5499 272 1 0 4 0 1 638 6 8 115 1 21 230 0 1 777 0 12 840 0 2 279 0 2 176 0 1 82 318 8 241 0 1 149 0 1 310 8 0 162 0 2 52 0 1 219 chain 44374 chr7 159345973 + 88434228 88434789 L1PA7 6471 + 5908 6467 31899 83 4 0 316 2 4 103 1 0 4 0 1 48 chain 14278 chr7 159345973 + 88468706 88468993 THE1C 375 + 0 307 63224 15 2 0 31 1 7 17 15 16 21 8 10 62 0 3 18 40 50 57 chain 6061 chr7 159345973 + 88521113 88521285 L1PB1 5432 + 5270 5422 80863 10 1 0 16 1 0 4 2 0 13 24 14 5 1 0 14 2 0 24 10 9 13 2 1 11 1 0 18 chain 4653 chr7 159345973 + 88524104 88524162 MER58B 340 + 276 334 87520 58 chain 27145 chr7 159345973 + 88531201 88531557 THE1B 368 + 0 356 46056 15 2 0 25 0 5 123 1 0 24 2 0 164 chain 122498 chr7 159345973 + 88558121 88559681 THE1A-int 1579 + 0 1568 15115 148 5 8 284 0 2 52 1 0 699 18 22 278 0 1 23 2 1 50 chain 16154 chr7 159345973 + 88620993 88621174 L1PA5 6144 + 5953 6134 60805 181 chain 244613 chr7 159345973 + 88630763 88633563 L1PA5 6144 + 3347 6143 8363 160 1 3 1117 0 1 107 3 4 212 0 1 1079 1 0 104 8 0 8 chain 21985 chr7 159345973 + 88643898 88644189 THE1A 353 + 0 292 53860 22 5 7 81 1 0 182 chain 32992 chr7 159345973 + 88679657 88680262 L1PB1 5432 + 4839 5422 39521 38 10 16 33 1 9 67 4 3 98 1 0 11 3 0 24 1 0 4 3 2 14 5 1 9 2 0 51 1 0 18 13 12 32 1 0 15 1 0 2 11 0 28 9 6 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 22914 chr7 159345973 + 88709376 88709719 THE1B 368 + 0 368 52488 13 2 0 27 0 5 57 4 8 13 11 32 19 2 1 82 0 1 33 3 0 77 chain 82997 chr7 159345973 + 88816255 88817215 L1PA5 6144 + 5006 5968 21016 664 0 1 247 7 8 42 chain 62731 chr7 159345973 + 88857051 88857785 L1PA4 6152 + 2927 3664 25703 244 1 0 453 1 5 35 chain 29139 chr7 159345973 + 88870104 88870407 AluYg6 310 + 0 303 43133 303 chain 119949 chr7 159345973 + 88874732 88876056 L1PA3long 6157 + 2566 3890 15546 1324 chain 6081 chr7 159345973 + 88944727 88944894 Tigger4b 360 + 1 190 80796 18 17 11 44 4 8 14 18 41 5 0 1 14 7 8 5 1 0 20 chain 68745 chr7 159345973 + 88946836 88947681 L1PA7 6471 + 5632 6470 24273 71 1 0 623 5 0 131 1 0 13 chain 21584 chr7 159345973 + 89076215 89076554 THE1B 368 + 2 368 54382 45 38 58 67 1 0 134 5 13 49 chain 34113 chr7 159345973 + 89147584 89148071 MER1A 529 + 32 527 38626 48 15 20 296 1 0 48 23 27 56 chain 114246 chr7 159345973 + 89195166 89197038 L1PA11 4918 + 2997 4567 16513 501 215 0 11 0 1 186 1 0 126 74 0 105 0 1 140 0 1 20 6 8 185 1 2 33 8 10 62 8 7 11 2 0 68 2 0 13 1 0 20 4 0 9 31 22 15 1 0 13 chain 3286 chr7 159345973 + 89196238 89196279 L1PA11 4918 + 3854 3895 97144 41 chain 93514 chr7 159345973 + 89279866 89280905 L1PA3long 6157 + 2601 3644 19110 663 0 4 376 chain 24545 chr7 159345973 + 89281956 89282219 AluYa5 310 + 37 300 49955 263 chain 12624 chr7 159345973 + 89320048 89320201 L1PA7 6471 + 6310 6462 65768 148 1 0 4 chain 40899 chr7 159345973 + 89361353 89361823 L1PA4 6152 + 4024 4500 34030 422 5 11 43 chain 75501 chr7 159345973 + 89442386 89443249 L1PA4 6152 + 4168 5034 22716 186 0 4 277 1 0 129 2 1 115 0 1 153 chain 4999 chr7 159345973 + 89445378 89445459 MLT1E3 631 + 546 631 85670 13 11 15 57 chain 6862 chr7 159345973 + 89472448 89472770 MLT1B 390 + 55 379 78095 46 218 220 58 chain 9010 chr7 159345973 + 89481175 89481276 L1PA5 6144 + 6029 6130 72535 101 chain 53997 chr7 159345973 + 89505325 89505942 L1P1 4361 + 3711 4328 28227 439 1 0 130 0 2 23 1 0 23 chain 124413 chr7 159345973 + 89523760 89525162 L1PA4 6152 + 3676 5078 14790 1402 chain 508177 chr7 159345973 + 89539788 89546974 L1PA7 6471 + 125 6470 2839 253 0 1 27 1 2 246 0 1 524 1 0 170 15 16 630 4 0 172 1 2 40 0 1 313 0 2 58 5 6 50 0 2 455 0 4 397 1 0 26 0 1 6 0 2 12 0 4 203 0 10 72 7 1 8 0 6 22 7 6 115 1 0 23 0 1 92 0 5 94 0 2 107 0 1 110 0 1 242 1 9 152 2 1 154 0 1 511 879 0 116 0 1 7 2 0 720 0 1 81 10 7 27 1 0 13 chain 2265 chr7 159345973 + 89610650 89610674 L1PA7 6471 + 5278 5302 104921 24 chain 25618 chr7 159345973 + 89610674 89610969 L1PA7 6471 + 5303 5599 48284 268 0 1 27 chain 57400 chr7 159345973 + 89610970 89611661 L1PA7 6471 + 5604 6298 27129 263 0 3 266 0 1 138 7 6 17 chain 11952 chr7 159345973 + 89611680 89611828 L1PA7 6471 + 6317 6469 66917 136 1 5 11 chain 37927 chr7 159345973 + 89624154 89624629 LTR10F 562 + 2 562 36118 104 0 84 45 0 3 19 1 0 24 2 1 280 chain 183911 chr7 159345973 + 89627434 89629925 HERVIP10FH-int 2884 + 149 2567 10389 64 14 4 26 0 3 153 3 0 197 1 0 400 0 2 174 1 0 21 2 1 14 2 0 172 4 1 7 3 0 11 1 0 7 1 0 63 9 4 122 4 0 12 49 32 12 7 1 14 23 6 38 21 9 39 17 6 15 5 4 137 0 1 129 1 0 35 0 14 128 0 4 19 1 0 24 1 0 106 0 1 153 0 4 29 chain 21966 chr7 159345973 + 89644214 89644451 L1PA2 6032 + 5790 6028 53885 96 0 1 141 chain 29978 chr7 159345973 + 89668261 89668878 L1PA13 3608 + 116 703 42078 16 100 86 56 19 17 124 1 0 13 2 1 16 2 0 14 28 25 16 3 1 15 6 4 12 1 0 98 2 0 73 chain 69318 chr7 159345973 + 89674047 89674898 L1PA7 6471 + 809 1670 24155 102 3 6 5 3 0 246 0 1 41 0 4 160 0 1 12 0 3 221 0 1 58 chain 88984 chr7 159345973 + 89682464 89683460 L1PA3long 6157 + 5160 6157 19860 35 0 1 961 chain 24988 chr7 159345973 + 89707881 89708172 AluYk4 311 + 10 302 49304 70 0 1 221 chain 105625 chr7 159345973 + 89718714 89720168 L1P2 5180 + 2 1458 17607 148 2 1 49 1 0 35 0 1 8 8 7 55 5 8 123 0 1 8 19 0 69 1 0 50 1 0 218 4 19 291 32 36 191 3 5 133 chain 24241 chr7 159345973 + 89746115 89746391 AluYc 301 + 0 274 50432 122 2 0 152 chain 140472 chr7 159345973 + 89860666 89862808 HUERS-P3b-int 2065 + 13 2031 13059 80 4 0 202 4 0 21 75 0 84 2 1 179 3 0 135 0 1 4 17 16 34 13 12 23 0 5 9 49 45 203 0 1 403 1 0 44 25 2 21 8 9 54 2 0 13 1 0 24 1 0 90 3 1 69 26 22 59 25 21 43 1 0 88 chain 9658 chr7 159345973 + 89895256 89895368 L1PA5 6144 + 6027 6139 71144 112 chain 3494 chr7 159345973 + 89911397 89911439 Tigger13a 716 + 155 198 95288 38 0 1 4 chain 38176 chr7 159345973 + 90036260 90036710 L1PA7 6471 + 6021 6470 35928 292 0 1 52 2 0 104 chain 17638 chr7 159345973 + 90048294 90048585 THE1B 368 + 2 306 59081 102 14 15 50 1 0 21 19 24 10 8 16 66 chain 457368 chr7 159345973 + 90070306 90076792 L1PA5 6144 + 354 5876 4197 207 6 5 110 0 3 132 0 17 81 17 10 26 25 0 203 29 21 25 0 1 1104 1 0 4 1 2 912 1 2 135 0 1 147 2 0 239 1 0 7 1 2 122 1 0 29 8 4 311 5 1 90 937 0 324 0 5 315 0 1 152 0 1 188 2 1 308 4 0 274 chain 86701 chr7 159345973 + 90074304 90075225 L1HS 6032 + 5108 6029 20234 921 chain 2874 chr7 159345973 + 90091279 90091321 L1PA16 3655 + 923 963 101045 35 2 0 5 chain 16969 chr7 159345973 + 90113262 90113498 MER75B 242 + 2 235 59835 27 1 3 24 4 1 169 2 0 9 chain 64180 chr7 159345973 + 90115687 90116393 L1PA5 6144 + 5432 6138 25373 706 chain 32867 chr7 159345973 + 90125773 90126227 L1PA8 5853 + 5415 5853 39616 149 1 0 47 2 0 68 1 0 6 13 3 52 27 25 88 chain 21390 chr7 159345973 + 90152902 90153135 SVA_D 2077 + 1835 2068 54645 233 chain 6264 chr7 159345973 + 90173654 90173791 MLT1C 463 + 20 152 80113 68 3 4 13 39 33 14 chain 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91888346 SVA_A 1864 + 561 589 48175 28 chain 3165 chr7 159345973 + 91888426 91888484 SVA_A 1864 + 1003 1059 46867 21 2 0 35 chain 3207 chr7 159345973 + 91888488 91888527 SVA_A 1864 + 727 766 49772 39 chain 2857 chr7 159345973 + 91888783 91888822 SVA_A 1864 + 611 648 72537 5 12 10 22 chain 3584 chr7 159345973 + 91888856 91888899 SVA_A 1864 + 756 799 74281 43 chain 1424 chr7 159345973 + 91889018 91889055 SVA_A 1864 + 1282 1319 43084 37 chain 1769 chr7 159345973 + 91889057 91889094 SVA_A 1864 + 1208 1245 46124 37 chain 40414 chr7 159345973 + 91931568 91932125 L1PA8 5853 + 5302 5853 34374 258 7 6 42 2 0 70 2 1 8 4 3 9 1 2 42 1 0 12 10 9 89 chain 4851 chr7 159345973 + 91935013 91935134 L1MA4 2864 + 2725 2809 86419 12 34 8 21 11 0 43 chain 158481 chr7 159345973 + 92026347 92028308 SVA_A 1864 + 15 1864 11841 312 0 1 325 3 1 105 14 13 115 2 4 22 2 0 44 40 0 141 41 0 46 1 0 173 38 10 537 chain 3016 chr7 159345973 + 92027291 92027331 SVA_A 1864 + 884 920 33191 2 1 0 26 3 0 8 chain 3235 chr7 159345973 + 92073858 92073894 L1PA7 6471 + 5291 5327 97608 36 chain 82390 chr7 159345973 + 92073894 92074846 L1PA7 6471 + 5334 6294 21154 280 0 4 178 1 5 493 chain 9683 chr7 159345973 + 92074877 92074997 L1PA7 6471 + 6326 6446 71094 120 chain 39079 chr7 159345973 + 92135491 92135990 HERV1_LTRb 511 + 9 511 35304 71 14 12 16 1 3 188 0 2 159 0 1 50 chain 15559 chr7 159345973 + 92136583 92136885 L1PB1 5432 + 5134 5409 61575 13 1 0 7 2 0 5 2 0 8 2 0 53 2 1 15 1 0 44 1 0 16 22 12 19 2 0 5 1 0 11 7 6 21 1 0 21 1 0 13 1 0 5 chain 22802 chr7 159345973 + 92254832 92255181 THE1B 368 + 0 366 52657 44 0 15 46 5 0 67 1 0 26 3 0 68 0 3 15 31 39 43 chain 6754 chr7 159345973 + 92283600 92283763 Tigger3c 601 + 0 184 78465 18 21 37 19 1 0 8 1 0 23 30 37 42 chain 7189 chr7 159345973 + 92291308 92291442 L1MA3 4352 + 4204 4333 76976 28 4 5 21 2 0 24 2 1 5 1 0 27 1 0 13 1 0 5 chain 513641 chr7 159345973 + 92379778 92385885 L1PA6 6164 + 0 6159 2592 44 0 3 256 2 1 66 4 12 22 6 5 26 0 7 66 3 2 393 0 4 49 1 0 195 0 1 207 0 16 959 2 0 36 0 2 27 0 4 1354 0 1 421 0 2 187 0 4 875 0 1 64 0 4 75 1 3 114 2 1 650 chain 2183 chr7 159345973 + 92409912 92409935 L1PA6 6164 + 5447 5470 105354 23 chain 57693 chr7 159345973 + 92409935 92410682 L1PA6 6164 + 5471 6162 27053 136 35 0 4 17 0 545 4 0 6 chain 2847 chr7 159345973 + 92410075 92410106 L1PA6 6164 - 488 519 89382 31 chain 97871 chr7 159345973 + 92541197 92542528 L1MA3 4352 + 2218 3561 18540 14 0 2 14 0 2 63 1 0 39 1 0 13 0 4 34 13 0 3 1 0 31 0 7 13 2 6 120 4 1 463 9 10 121 0 12 122 6 0 110 0 5 134 chain 3828 chr7 159345973 + 92587335 92587452 L1MC1 2226 + 2009 2123 92656 38 58 55 21 chain 8826 chr7 159345973 + 92624284 92624536 MLT1B 390 + 71 325 72928 38 7 16 17 113 106 77 chain 10840 chr7 159345973 + 92934809 92934963 L1PA8 5853 + 5701 5853 68796 26 18 17 16 1 0 93 chain 20730 chr7 159345973 + 92942689 92943054 THE1B 368 + 0 368 55456 34 1 0 74 14 15 46 49 45 18 3 11 75 2 1 49 chain 370856 chr7 159345973 + 92957112 92961408 L1PA5 6144 + 1813 6143 5633 24 0 4 98 2 1 34 1 0 336 7 0 266 0 2 571 0 6 85 0 7 524 0 1 215 1 4 340 0 6 6 0 6 137 0 4 793 0 2 525 0 2 331 chain 27131 chr7 159345973 + 93004157 93004558 MER57A1 433 + 0 433 46080 72 30 0 11 0 30 127 0 29 12 0 2 7 2 1 42 0 2 98 chain 30051 chr7 159345973 + 93029393 93029778 MLT2A1 477 + 0 384 41998 169 4 1 11 4 5 18 0 1 179 chain 174746 chr7 159345973 + 93031920 93034667 L1PREC2 3366 + 209 2951 10854 24 2 1 9 3 2 12 2 0 32 1 0 111 1 0 27 62 55 170 8 12 78 8 7 107 63 44 9 0 19 81 2 1 103 0 1 76 0 1 56 1 2 30 14 16 15 0 3 27 0 4 208 0 7 14 17 19 9 1 0 94 0 3 27 6 10 31 7 1 4 0 1 188 0 4 48 8 12 177 6 12 92 2 1 52 1 0 33 0 1 347 0 7 6 2 0 10 10 0 18 21 27 37 1 0 6 1 0 4 13 0 13 29 21 16 7 2 15 3 1 29 chain 287357 chr7 159345973 + 93077052 93081050 L1PA10 4194 + 175 4104 7216 14 3 0 12 70 58 12 2 0 16 1 0 7 54 28 13 2 0 21 4 3 4 1 0 11 1 0 8 1 0 13 7 0 8 2 1 80 2 0 14 1 8 340 0 1 127 19 22 233 10 4 44 8 9 225 17 18 370 33 5 111 1 2 233 5 10 366 1 2 196 0 1 4 1 0 79 2 0 687 4 8 86 0 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159345973 + 94327392 94327944 L1PA6 6164 + 5607 6160 30794 409 1 2 142 chain 32628 chr7 159345973 + 94327965 94328342 L1PA7 6471 + 6086 6464 39834 234 0 1 143 chain 12970 chr7 159345973 + 94372021 94372243 MER1B 344 + 59 344 65153 18 25 57 86 4 0 47 10 45 32 chain 8359 chr7 159345973 + 94491098 94491214 L1PB1 5432 + 4705 4822 74000 99 1 2 16 chain 122652 chr7 159345973 + 94705313 94706742 LTR12C 1709 + 0 1709 15087 262 0 1 32 0 1 354 0 278 184 1 0 8 2 0 104 0 4 21 1 0 460 chain 10567 chr7 159345973 + 94722107 94722286 L1M1 2793 + 1158 1341 69292 19 10 9 24 0 4 55 25 26 46 chain 188928 chr7 159345973 + 94731960 94734704 L1PA13 3608 + 775 3548 10167 33 1 2 296 2 1 5 0 1 8 0 2 29 9 12 227 5 51 71 7 11 410 2 1 26 6 10 7 0 4 160 0 1 6 16 5 175 1 0 338 8 9 160 3 0 133 6 14 88 0 3 55 8 6 24 1 0 114 2 0 59 6 5 15 4 5 32 17 14 23 2 1 17 2 0 4 2 0 20 1 0 24 3 0 9 12 7 10 1 0 6 7 1 9 5 2 12 chain 3819 chr7 159345973 + 94746746 94746825 MER89 557 + 0 69 92718 43 7 8 10 11 0 8 chain 189921 chr7 159345973 + 94757240 94760298 L1PBa 3878 + 48 2891 10125 12 3 0 3 1 0 16 142 86 48 163 15 9 2 0 250 8 9 28 2 1 238 32 35 27 2 0 5 6 12 138 8 11 50 10 19 99 34 11 21 2 0 6 0 1 94 1 2 245 0 5 70 43 39 178 1 3 15 8 11 75 40 0 94 0 13 40 0 1 327 1 0 120 5 1 169 0 4 87 0 5 36 3 18 41 chain 2731 chr7 159345973 + 94758544 94758576 L1PBa 3878 + 1119 1151 100828 32 chain 10133 chr7 159345973 + 94772149 94772323 L1PB1 5432 + 5159 5325 70139 9 2 0 52 2 1 16 2 1 42 1 0 14 6 3 28 chain 43319 chr7 159345973 + 94777203 94777781 LTR12 884 + 48 873 32549 29 14 16 247 1 2 36 2 0 54 4 14 98 0 236 93 chain 244699 chr7 159345973 + 94783973 94787252 L1PA7 6471 + 3489 6466 8359 8 2 0 32 6 5 302 1 0 166 0 1 665 0 4 499 0 4 446 316 3 59 15 17 201 17 23 381 21 22 132 3 0 7 chain 480044 chr7 159345973 + 94794534 94800521 L1PA6 6164 + 160 6162 3633 291 41 22 96 1 0 228 0 17 914 1 0 82 1 2 401 1 3 114 2 0 62 4 5 562 0 2 87 1 2 139 0 1 36 1 2 72 0 1 702 1 0 195 2 1 204 0 2 439 9 11 343 7 5 5 0 2 108 0 4 48 1 4 69 1 2 569 8 9 139 chain 33108 chr7 159345973 + 94877724 94878226 LTR10F 562 + 0 562 39427 134 38 5 89 0 3 14 0 20 12 5 76 40 0 1 30 6 5 69 3 2 62 chain 148665 chr7 159345973 + 94880275 94882604 HERVIP10FH-int 2884 + 149 2824 12443 64 3 0 186 11 9 112 0 5 66 0 2 91 0 5 81 0 1 279 0 1 40 7 8 95 316 662 194 1 0 173 4 0 8 16 19 24 1 0 61 0 8 70 7 1 128 0 1 96 1 0 15 2 1 50 1 0 50 1 0 17 1 0 13 10 4 27 0 1 7 chain 14353 chr7 159345973 + 94882905 94883080 LTR10F 562 + 0 231 63108 148 1 57 26 chain 3225 chr7 159345973 + 94896805 94896842 MER74A 558 + 521 558 97709 37 chain 44383 chr7 159345973 + 95008797 95009299 L1PA5 6144 + 5630 6132 31894 502 chain 17061 chr7 159345973 + 95043423 95043733 MER83B 357 + 0 314 59743 34 0 1 9 1 18 62 48 30 57 1 0 21 7 13 65 1 0 4 chain 6210 chr7 159345973 + 95067966 95068047 LTR7Y 441 + 211 395 80317 10 0 103 71 chain 119186 chr7 159345973 + 95079390 95080690 L1PA3long 6157 + 3445 4746 15657 518 0 2 278 1 0 503 chain 35155 chr7 159345973 + 95134018 95134464 L1PA8 5853 + 5395 5834 37921 126 1 0 43 1 0 46 2 0 68 2 1 11 1 0 50 2 1 93 chain 380976 chr7 159345973 + 95176131 95182158 L1PB1 5432 + 78 5420 5462 199 5 6 123 14 0 76 0 3 38 45 41 135 0 4 370 0 1 4 1 0 299 0 5 2 5 0 11 1 0 4 9 5 51 2 0 146 7 12 38 0 3 15 9 13 22 2 0 79 9 0 206 12 13 516 0 5 314 6 5 80 0 3 93 4 5 450 4 8 38 1 0 60 1 0 4 0 1 152 3 0 59 0 1 159 1 0 38 5 7 250 3 0 85 13 18 56 8 4 216 0 3 27 15 14 30 0 2 83 1 0 24 14 13 168 767 112 12 3 0 18 1 0 11 1 0 12 15 9 35 7 6 12 2 1 16 1 0 44 1 0 23 11 5 18 3 1 4 1 0 14 1 0 24 1 0 7 0 3 11 1 0 13 1 0 16 chain 46903 chr7 159345973 + 95210617 95211156 L1PA7 6471 + 5930 6469 30699 539 chain 109328 chr7 159345973 + 95232260 95233523 L1PA7 6471 + 5198 6467 17136 423 0 3 718 0 3 122 chain 48089 chr7 159345973 + 95233549 95234185 L1PB1 5432 + 2837 3468 30262 5 3 0 362 3 2 36 1 0 226 chain 57850 chr7 159345973 + 95234185 95234924 L1PB1 5432 + 3472 4224 27010 258 1 2 218 12 17 105 1 8 144 chain 80426 chr7 159345973 + 95234930 95236129 L1PB1 5432 + 4231 5422 21537 395 2 0 33 4 0 190 1 0 100 1 28 126 13 11 23 1 0 7 1 0 14 5 1 9 2 0 52 2 1 16 1 0 32 11 12 15 29 20 10 3 1 5 1 0 14 2 0 24 1 0 17 7 6 11 1 0 18 chain 34278 chr7 159345973 + 95299427 95299863 MLT2A1 477 + 0 477 38512 66 0 2 101 0 4 75 0 1 76 1 0 60 5 40 52 chain 23370 chr7 159345973 + 95343819 95344104 L1PA7 6471 + 6182 6465 51820 135 3 4 138 3 0 6 chain 188812 chr7 159345973 + 95376779 95379224 L1P2 5180 + 2 2464 10174 143 9 13 8 5 0 28 1 0 50 11 10 192 19 0 67 5 2 48 1 0 220 0 15 194 3 21 67 1 4 165 7 8 176 7 11 489 0 1 273 0 2 103 11 7 115 0 3 27 chain 534364 chr7 159345973 + 95379227 95385358 L1PA5 6144 + 3 6139 1646 869 0 1 1785 0 1 915 5 6 1716 0 5 166 0 1 20 0 1 67 0 1 33 6 0 549 chain 302265 chr7 159345973 + 95385377 95389097 L1PA6 6164 + 2458 6162 6775 329 0 3 108 0 1 170 72 6 98 6 7 444 0 1 123 4 0 617 0 4 7 0 1 356 2 1 370 0 43 247 0 2 751 1 0 15 chain 4025 chr7 159345973 + 95385984 95386032 L1PA6 6164 - 3990 4038 91273 48 chain 117083 chr7 159345973 + 95460186 95461692 THE1C-int 1605 + 2 1599 16042 12 2 1 280 0 3 29 0 6 112 0 7 300 6 0 80 0 2 5 4 84 83 2 1 249 0 1 234 5 4 36 0 1 67 chain 4001 chr7 159345973 + 95472342 95472422 MER45A 178 + 91 168 91451 32 18 15 30 chain 137685 chr7 159345973 + 95567454 95568982 L1PA3long 6157 + 3245 4777 13286 47 0 1 221 0 1 74 0 1 865 0 1 321 chain 2839 chr7 159345973 + 95574787 95574821 MER58D 378 + 329 363 101332 34 chain 89811 chr7 159345973 + 95605308 95606558 LTR12C 1709 + 84 1709 19718 274 12 155 297 0 200 58 5 52 95 22 15 70 5 22 139 26 3 77 1 0 86 6 5 77 chain 4680 chr7 159345973 + 95606959 95607015 L1P2 5180 + 1280 1338 87383 44 0 2 12 chain 232475 chr7 159345973 + 95613922 95617709 L1PA13 3608 + 147 3548 8679 16 1 0 14 3 0 24 53 33 54 1 0 4 1 0 8 1 2 102 48 44 14 6 2 36 3 1 15 2 0 16 1 0 99 2 0 271 10 11 5 2 0 277 0 2 316 0 4 386 31 33 11 0 6 8 8 7 154 0 3 54 1 2 64 30 8 42 2 1 202 0 2 125 320 1 407 1 0 95 1 0 10 1 4 18 1 0 114 3 1 58 24 24 39 2 0 48 4 0 24 1 0 10 59 47 9 1 0 14 chain 112459 chr7 159345973 + 95665897 95667259 L1PA7 6471 + 5095 6461 16757 6 1 0 519 2 1 37 0 2 133 0 2 512 0 1 100 0 1 52 chain 46408 chr7 159345973 + 95706331 95706928 LTR12F 595 + 0 595 30882 102 1 2 41 2 0 32 6 14 19 14 5 380 chain 11050 chr7 159345973 + 95724532 95724744 Tigger3a 397 + 158 373 68489 135 54 60 7 3 0 13 chain 3088 chr7 159345973 + 95756630 95756667 MIRc 230 + 83 119 98881 29 1 0 7 chain 8116 chr7 159345973 + 95792598 95792698 MER34 540 + 370 470 74600 100 chain 279908 chr7 159345973 + 95941946 95945033 L1PA3long 6157 + 3068 6157 7424 2416 0 1 338 0 1 333 chain 14908 chr7 159345973 + 96055215 96055417 L1PA7 6471 + 6266 6468 62378 47 13 13 142 chain 10128 chr7 159345973 + 96128618 96128752 L1PA8 5853 + 5717 5849 70152 23 2 1 19 1 0 89 chain 6542 chr7 159345973 + 96229236 96229363 LTR12C 1709 + 751 837 79187 51 41 0 35 chain 23636 chr7 159345973 + 96242549 96242971 MER4E 760 + 330 748 51374 17 97 97 35 1 0 50 5 0 209 0 2 8 chain 362034 chr7 159345973 + 96255817 96260216 L1PA7 6471 + 2047 6467 5781 421 1 7 106 0 2 512 0 4 248 0 1 4 1 0 25 0 3 104 1 2 4 1 0 7 2 0 659 6 4 153 2 1 183 0 1 170 0 4 645 0 2 67 0 1 228 1 4 29 0 1 36 3 4 96 8 9 182 9 9 57 0 2 417 5 0 6 chain 539280 chr7 159345973 + 96288293 96294436 L1PA5 6144 + 3 6140 1383 460 0 1 55 1 9 148 0 3 348 1 0 208 1 0 207 1 0 267 1 0 83 20 6 507 4 1 717 0 1 182 0 1 433 1 0 555 0 1 687 0 1 1256 chain 20975 chr7 159345973 + 96313324 96313664 L1PA16 3655 + 3301 3619 55166 26 0 1 4 2 1 66 11 12 166 3 0 13 21 6 7 5 0 16 chain 6417 chr7 159345973 + 96330637 96330713 U6 107 + 0 76 79614 76 chain 7571 chr7 159345973 + 96341154 96341246 U6 107 + 15 107 75926 92 chain 20878 chr7 159345973 + 96348587 96348994 MSTA 426 + 7 426 55281 109 116 114 21 0 2 20 0 3 24 0 5 7 3 7 107 chain 17887 chr7 159345973 + 96357425 96357711 LTR23 429 + 0 276 58777 99 17 16 84 19 10 67 chain 3239 chr7 159345973 + 96377857 96377895 U7 62 + 1 39 97578 38 chain 5792 chr7 159345973 + 96411799 96411869 MER41B 635 + 481 551 81967 70 chain 234696 chr7 159345973 + 96454543 96457421 HERVL-int 5654 + 2769 5654 8608 676 3 0 5 18 21 622 1 2 559 2 3 165 2 0 120 5 6 99 6 10 145 0 1 231 0 1 219 chain 31910 chr7 159345973 + 96457421 96457849 MLT2A1 477 + 0 414 40403 141 6 0 28 1 5 228 12 0 12 chain 70102 chr7 159345973 + 96515206 96516035 L1PA6 6164 + 5335 6161 23974 821 3 0 5 chain 14140 chr7 159345973 + 96525729 96525962 MER1B 344 + 96 339 63394 34 14 15 71 4 0 49 18 31 43 chain 5300 chr7 159345973 + 96548427 96548491 MER5A1 166 + 67 131 84199 64 chain 5535 chr7 159345973 + 96613088 96613238 LTR37A 408 + 6 163 83101 25 66 70 47 0 3 12 chain 96350 chr7 159345973 + 96631579 96632718 L1PA7 6471 + 5335 6468 18729 286 1 0 17 0 1 497 0 1 324 7 0 7 chain 52421 chr7 159345973 + 96662010 96662685 L1PA8 5853 + 5182 5853 28751 333 0 3 46 1 0 45 2 0 67 4 3 9 1 0 56 1 0 16 1 0 93 chain 65914 chr7 159345973 + 96683208 96683997 L1PA7 6471 + 5635 6431 24975 67 2 1 287 0 3 143 0 1 146 0 3 91 0 1 53 chain 71962 chr7 159345973 + 96687000 96687789 L1PA3long 6157 + 5361 6153 23550 397 0 3 392 chain 33296 chr7 159345973 + 96723053 96723449 L1PA7 6471 + 6080 6470 39265 378 0 1 4 7 0 7 chain 10955 chr7 159345973 + 96769635 96769794 MLT2B3 573 + 421 573 68610 95 17 10 47 chain 251310 chr7 159345973 + 96811934 96815041 L1PA8 5853 + 2743 5841 8191 132 0 1 132 0 1 90 0 4 118 2 0 116 0 1 718 0 4 259 0 1 394 19 19 222 24 0 52 0 2 555 1 0 45 2 0 62 9 8 15 0 9 37 2 1 19 2 1 80 chain 12151 chr7 159345973 + 96821255 96821391 L1PA8 5853 + 5421 5557 66568 136 chain 3918 chr7 159345973 + 96821397 96821443 L1PA8 5853 + 5562 5608 91981 46 chain 8129 chr7 159345973 + 96821445 96821576 L1PA8 5853 + 5608 5739 74569 70 2 1 14 14 15 31 chain 7068 chr7 159345973 + 96821665 96821745 L1PA8 5853 + 5769 5849 77372 80 chain 3885 chr7 159345973 + 96857462 96857512 Charlie1a 1436 + 1328 1378 92256 50 chain 14678 chr7 159345973 + 96930446 96930672 L1PA11 4918 + 4269 4485 62701 59 5 0 60 22 19 67 2 0 11 chain 30713 chr7 159345973 + 97034818 97035850 LTR12C 1709 + 773 1515 41378 64 6 5 229 0 47 85 543 238 22 54 24 7 1 0 21 chain 3176 chr7 159345973 + 97035303 97035339 LTR12C 1709 + 1019 1055 98138 36 chain 5859 chr7 159345973 + 97047255 97047321 MSTC 436 + 370 436 81658 66 chain 503172 chr7 159345973 + 97050615 97057246 L1PA7 6471 + 3 6452 3025 407 4 6 262 42 40 214 0 24 34 2 1 310 0 6 452 0 1 63 0 1 159 1 2 276 1 0 237 0 2 63 0 1 7 0 2 59 5 0 334 0 6 121 0 3 120 315 98 180 6 5 314 0 4 185 0 1 155 4 2 280 19 15 119 1 0 4 0 1 755 5 6 157 4 1 4 0 1 121 0 1 77 2 1 90 1 0 474 11 10 175 chain 295335 chr7 159345973 + 97058898 97062621 L1PA6 6164 + 2403 6157 6969 20 7 12 358 0 4 397 1 0 27 32 30 148 0 1 65 0 1 471 3 4 324 1 0 7 0 1 808 0 2 171 1 0 58 0 4 539 1 0 6 0 18 124 0 6 6 15 9 133 chain 44835 chr7 159345973 + 97062631 97063243 L1PA8A 6298 + 5665 6291 31676 270 1 2 86 0 5 117 61 69 77 chain 65089 chr7 159345973 + 97074407 97075197 LTR17 781 + 0 781 25169 299 10 0 27 1 2 453 chain 184495 chr7 159345973 + 97098866 97102007 L1PB1 5432 + 1661 4181 10364 157 3 0 6 0 3 280 389 69 25 0 1 110 5 4 106 0 9 69 1 0 333 1 0 26 318 0 147 1 2 57 1 0 120 9 11 534 2 3 94 0 4 192 0 3 155 chain 91199 chr7 159345973 + 97140487 97141570 MER11B 1079 + 0 1079 19469 200 0 1 27 0 5 26 3 0 513 6 0 292 5 4 11 chain 49734 chr7 159345973 + 97160035 97160604 SVA_A 1864 + 913 1551 29666 148 2 0 37 2 73 380 chain 68101 chr7 159345973 + 97194378 97195236 L1PA7 6471 + 825 1697 24432 136 1 0 6 0 1 64 0 9 194 0 4 7 2 0 387 0 2 49 0 1 12 chain 41604 chr7 159345973 + 97195236 97195712 L1PA7 6471 + 5002 5478 33447 476 chain 8675 chr7 159345973 + 97195737 97195847 L1PA7 6471 + 5503 5614 73273 62 0 1 48 chain 5635 chr7 159345973 + 97195847 97195925 L1PA7 6471 + 5617 5694 82625 22 2 1 54 chain 24165 chr7 159345973 + 97195926 97196236 L1PA7 6471 + 5699 6010 50551 46 1 0 153 17 19 93 chain 34919 chr7 159345973 + 97196236 97196676 L1PA7 6471 + 6012 6451 38077 290 11 10 139 chain 77250 chr7 159345973 + 97233850 97234912 MER11A 1151 + 1 1133 22257 54 0 99 73 0 4 63 4 0 73 1 0 31 0 4 41 0 1 94 0 1 31 2 0 114 5 6 120 0 26 26 43 0 22 18 0 36 0 1 46 0 1 165 chain 359930 chr7 159345973 + 97236329 97242450 L1PA7 6471 + 1819 6467 5802 343 1 6 97 1 0 99 12 13 201 2 0 5 0 2 49 4 6 794 0 1 66 656 14 30 7 11 29 0 2 16 0 4 201 1 5 370 0 2 22 0 2 72 0 3 20 0 2 214 0 6 31 297 0 112 0 8 167 295 0 111 1 0 69 0 3 307 324 24 189 11 12 62 0 4 50 0 3 20 0 2 85 22 30 117 2 0 28 2 0 4 0 1 165 2 0 5 4 6 268 0 1 49 2 0 8 chain 22137 chr7 159345973 + 97265435 97265666 AluYa5 310 + 74 305 53647 231 chain 28909 chr7 159345973 + 97282597 97283036 MLT2A2 560 + 0 560 43470 183 55 62 47 0 98 13 1 12 43 0 5 97 chain 212254 chr7 159345973 + 97308518 97310925 L1PA5 6144 + 3710 6128 9266 148 0 12 1565 6 6 444 1 0 243 chain 59713 chr7 159345973 + 97315536 97316316 LTR17 781 + 0 781 26457 326 2 1 46 48 28 308 10 32 40 chain 3783 chr7 159345973 + 97322925 97322969 U5 65 + 0 44 92964 44 chain 5472 chr7 159345973 + 97328321 97328387 L1P2 5180 + 39 105 83342 66 chain 507173 chr7 159345973 + 97329763 97336035 L1PA6 6164 + 13 5991 2882 272 5 3 18 0 4 199 0 1 59 1 0 337 0 4 180 0 3 344 5 14 816 0 5 112 0 1 705 321 0 40 1 0 55 3 0 5 0 2 336 1 0 407 0 1 434 0 4 664 0 1 952 chain 12201 chr7 159345973 + 97366939 97367090 L1PA7 6471 + 5050 5193 66470 16 9 1 126 chain 106435 chr7 159345973 + 97367090 97368350 L1PA7 6471 + 5197 6470 17503 424 0 3 71 0 4 298 1 0 20 0 1 118 0 1 188 1 6 139 chain 5198 chr7 159345973 + 97371609 97371690 LOR1b 457 + 0 91 84681 22 10 20 49 chain 38981 chr7 159345973 + 97449534 97449978 L1PA6 6164 + 5712 6156 35368 444 chain 10115 chr7 159345973 + 97450706 97450888 LTR73 568 + 170 345 70169 73 2 0 5 7 1 12 1 0 5 22 24 55 chain 6468 chr7 159345973 + 97472209 97472290 MER5A 189 + 24 105 79454 81 chain 6051 chr7 159345973 + 97495729 97495822 MLT1E2 623 + 525 622 80894 41 9 13 43 chain 555050 chr7 159345973 + 97532571 97539023 L1PA3long 6157 + 7 6149 405 170 0 1 10 0 2 746 0 1 2194 317 1 300 0 1 1619 0 1 1096 chain 442877 chr7 159345973 + 97557929 97563601 L1PA8A 6298 + 572 6291 4519 6 6 0 451 7 11 62 0 4 14 0 2 14 4 1 42 0 6 17 0 2 161 0 3 20 4 1 113 6 8 403 2 1 458 0 1 76 2 0 52 10 0 50 9 10 197 0 4 199 4 8 401 1 0 278 0 1 29 0 4 54 1 0 147 0 1 263 0 5 98 0 1 35 8 10 382 0 2 47 8 23 106 1 2 4 1 0 287 33 33 41 0 1 40 6 7 22 1 0 176 0 4 16 0 5 75 5 4 109 0 1 608 chain 142890 chr7 159345973 + 97584550 97586468 L1PA8 5853 + 3914 5853 12869 190 0 1 234 2 3 23 8 11 252 11 34 343 14 9 73 1 0 477 9 8 38 2 0 70 1 0 7 12 17 36 2 1 19 1 0 93 chain 76297 chr7 159345973 + 97597743 97598618 MER11D 897 + 0 897 22488 432 2 1 160 1 24 280 chain 5129 chr7 159345973 + 97599596 97599699 MER3 215 + 61 169 85021 49 30 35 24 chain 564965 chr7 159345973 + 97613656 97619688 L1HS 6032 + 0 6031 97 483 1 0 2578 1 0 560 0 1 2409 chain 37618 chr7 159345973 + 97628977 97629393 L1PA4 6152 + 5737 6152 36326 265 1 0 150 chain 33837 chr7 159345973 + 97639854 97640222 L1PA2 6032 + 5666 6032 38821 353 2 0 13 chain 122128 chr7 159345973 + 97644534 97646140 THE1B-int 1605 + 1 1605 15174 288 0 2 139 1 26 134 0 1 4 4 3 240 18 22 593 13 14 89 34 0 49 chain 2816 chr7 159345973 + 97646058 97646089 THE1B-int 1605 + 1561 1592 101555 31 chain 23940 chr7 159345973 + 97646140 97646468 THE1B 368 + 0 342 50881 44 0 15 48 3 4 61 1 0 8 0 1 4 1 0 108 1 0 49 chain 12661 chr7 159345973 + 97659994 97660155 L1PA7 6471 + 6311 6469 65699 146 3 0 12 chain 4969 chr7 159345973 + 97682537 97682609 MER21-int 1364 + 61 126 85813 6 7 0 59 chain 126472 chr7 159345973 + 97701514 97702898 L1PA3long 6157 + 4762 6152 14488 1374 0 6 10 chain 176401 chr7 159345973 + 97710645 97712726 L1PA6 6164 + 3142 6159 10756 47 0 1 73 1 0 13 0 3 6 3 0 15 1 0 96 1 0 663 0 933 320 0 4 734 0 1 108 chain 313599 chr7 159345973 + 97712772 97717191 L1PB1 5432 + 1106 5422 6545 283 0 1 10 7 24 159 4 6 127 88 0 127 0 4 225 0 5 344 4 0 19 6 0 37 0 1 21 4 10 68 1 0 140 1 8 93 0 1 7 2 1 756 0 1 12 18 18 4 0 1 109 2 4 124 8 10 95 1 2 62 21 3 349 2 3 55 0 1 9 14 11 131 1 0 36 4 0 82 1 3 99 0 8 288 1 2 9 5 0 24 1 0 9 1 0 10 16 10 53 2 1 15 1 0 45 1 0 18 39 22 6 2 0 4 1 0 17 2 0 22 1 0 21 1 0 13 1 0 18 chain 517727 chr7 159345973 + 97760436 97766544 L1PA5 6144 + 3 6132 2379 44 0 1 88 8 22 910 13 16 85 9 0 446 9 0 353 1 4 273 0 2 9 2 0 674 0 4 33 3 16 282 0 5 105 1 0 699 9 14 80 8 8 253 6 0 103 4 0 1200 1 2 159 0 1 238 chain 4195 chr7 159345973 + 97766629 97766680 MLT1E2 623 + 569 623 90165 16 0 3 35 chain 28519 chr7 159345973 + 97768496 97768797 AluYb9 318 + 12 313 44088 301 chain 409292 chr7 159345973 + 97779472 97784021 L1PA3long 6157 + 1588 6157 5030 59 0 2 2242 0 1 674 0 1 76 0 3 750 0 13 748 chain 525434 chr7 159345973 + 97785617 97791737 L1PA5 6144 + 3 6144 2026 201 0 1 428 19 20 501 1 4 430 0 1 46 0 2 97 0 18 128 0 1 87 1 4 1192 4 3 515 1 0 1170 2 0 1286 5 0 6 chain 516784 chr7 159345973 + 97810377 97816488 L1PA6 6164 + 1 6162 2433 84 0 4 160 5 7 253 2 1 17 0 28 289 0 1 83 0 4 303 0 1 229 0 4 245 8 9 237 0 1 933 1 0 295 0 1 578 1 2 121 0 1 1934 0 1 176 19 21 138 chain 27618 chr7 159345973 + 97816492 97816796 AluYk11 308 + 0 307 45435 40 0 3 264 chain 4330 chr7 159345973 + 97818684 97818742 L1MA4 2864 + 2750 2806 89286 17 2 0 39 chain 3427 chr7 159345973 + 97819269 97819309 MIR 256 + 72 112 95840 40 chain 16131 chr7 159345973 + 97828470 97828845 L1PREC2 3366 + 2709 3041 60851 43 2 0 26 0 1 20 14 13 38 1 0 3 6 0 14 29 21 17 6 1 15 3 1 29 37 20 35 6 4 31 chain 34340 chr7 159345973 + 97851083 97851454 L1PA5 6144 + 4873 5244 38463 371 chain 19935 chr7 159345973 + 97918671 97918932 L1PA8 5853 + 5586 5842 56473 20 7 5 71 1 0 58 2 1 19 1 0 82 chain 12384 chr7 159345973 + 97921922 97922082 L1MA8 2339 + 1931 2088 66169 23 2 0 55 1 0 79 chain 106872 chr7 159345973 + 97935748 97937135 LTR12C 1709 + 0 1708 17451 260 1 2 37 1 2 35 5 48 80 0 3 183 0 278 184 1 0 4 4 2 97 21 13 101 0 1 231 1 0 62 1 0 62 0 7 16 chain 12753 chr7 159345973 + 98023816 98023967 7SLRNA 320 + 133 284 65518 151 chain 3484 chr7 159345973 + 98068618 98068655 MER3 215 - 17 54 95351 37 chain 5878 chr7 159345973 + 98101300 98101378 THE1B 368 + 293 368 81563 37 3 0 38 chain 9347 chr7 159345973 + 98184572 98184685 MER4B 649 + 459 572 71823 113 chain 29693 chr7 159345973 + 98315969 98316325 THE1B 368 + 0 356 42374 197 0 1 133 1 0 25 chain 25338 chr7 159345973 + 98338160 98338440 AluYc 301 + 10 290 48731 280 chain 28836 chr7 159345973 + 98347803 98348144 L1PA7 6471 + 6123 6467 43577 84 0 1 59 0 2 198 chain 6522 chr7 159345973 + 98425398 98425557 L1MA5A 2387 + 2128 2266 79260 28 2 0 12 0 5 8 1 0 34 37 16 15 8 6 14 chain 3643 chr7 159345973 + 98468719 98468760 THE1D 372 + 331 372 94081 41 chain 20910 chr7 159345973 + 98654872 98655201 MSTA 426 + 7 389 55240 53 6 7 43 18 46 80 2 0 19 1 0 4 0 7 26 9 29 68 chain 64688 chr7 159345973 + 98715549 98716274 L1PA4 6152 + 5410 6136 25268 460 0 1 137 0 1 29 0 1 52 2 0 45 chain 6411 chr7 159345973 + 98880585 98880718 MER58B 340 + 64 213 79634 18 0 1 14 39 46 55 0 8 7 chain 22025 chr7 159345973 + 99036204 99036497 AluJb 308 + 11 302 53799 30 1 0 9 9 8 244 chain 26802 chr7 159345973 + 99059117 99059397 AluYa8 305 + 0 280 46540 280 chain 9542 chr7 159345973 + 99085411 99085536 MSTA 426 + 287 426 71383 14 1 15 110 chain 63628 chr7 159345973 + 99163912 99164627 L1PA4 6152 + 5415 6135 25496 588 0 1 34 0 1 31 0 3 62 chain 13766 chr7 159345973 + 99167780 99167949 MER1A 529 + 243 421 63928 157 0 9 12 chain 30546 chr7 159345973 + 99174015 99174477 MER1A 529 + 0 486 41528 17 3 21 36 0 11 7 15 4 63 1 0 118 1 0 45 3 4 72 0 7 51 3 0 6 6 9 15 chain 22096 chr7 159345973 + 99228610 99228847 L1PA2 6032 + 5718 5955 53704 237 chain 8977 chr7 159345973 + 99347741 99347845 AluSp 311 + 194 298 72610 104 chain 24449 chr7 159345973 + 99354837 99355132 AluSp 311 + 7 300 50101 122 2 0 171 chain 165838 chr7 159345973 + 99426151 99428117 SVA_D 2077 + 0 2075 11346 19 5 0 38 0 2 41 1 0 332 0 14 324 40 0 150 1 0 24 4 44 46 8 9 37 0 49 54 48 0 36 0 1 127 1 98 630 chain 2529 chr7 159345973 + 99427275 99427305 SVA_D 2077 + 1310 1341 46180 5 5 6 20 chain 6808 chr7 159345973 + 99469683 99469755 tRNA-Trp-TGG 72 + 0 72 78290 72 chain 34044 chr7 159345973 + 99471160 99471565 L1PA8A 6298 + 5875 6290 38674 376 0 10 29 chain 21660 chr7 159345973 + 99482578 99482869 AluSp 311 + 10 296 54280 36 11 7 140 5 4 99 chain 4524 chr7 159345973 + 99501273 99501340 LTR12F 595 + 75 137 88190 28 6 1 33 chain 59116 chr7 159345973 + 99549388 99550056 L1PA5 6144 + 5473 6141 26632 668 chain 4503 chr7 159345973 + 99671164 99671231 Charlie12 129 + 65 129 88309 5 1 0 28 1 0 3 1 0 28 chain 470795 chr7 159345973 + 99686019 99691447 L1PA4 6152 + 0 6151 3835 571 6 5 154 4 0 104 18 1 95 0 4 297 1 2 201 0 1 1259 0 5 471 0 1 344 0 1 8 0 714 118 0 4 515 0 4 425 0 4 826 0 6 11 chain 2305 chr7 159345973 + 99713106 99713143 MADE1 96 - 59 96 104706 37 chain 291065 chr7 159345973 + 99744007 99747527 L1PA5 6144 + 2606 6144 7099 131 0 1 184 0 1 261 2 1 322 0 2 357 10 8 170 0 13 6 3 4 275 1 5 74 0 1 206 2 0 1048 9 9 342 0 2 101 3 1 13 chain 306961 chr7 159345973 + 99773066 99776856 L1PA7 6471 + 2678 6470 6678 103 1 0 753 5 4 41 0 5 204 9 10 172 0 1 176 1 0 5 5 6 324 0 3 89 1 0 4 0 1 183 4 2 857 2 0 352 1 4 160 3 2 320 2 0 6 2 0 5 chain 560290 chr7 159345973 + 99809199 99815231 L1PA2 6032 + 0 6031 163 3392 1 0 2639 chain 21718 chr7 159345973 + 99819049 99819409 MSTA 426 + 0 410 54207 90 25 47 69 2 0 9 29 40 7 1 0 34 0 20 94 chain 7530 chr7 159345973 + 99836190 99836287 LTR15 485 + 387 480 76048 49 4 0 44 chain 60552 chr7 159345973 + 99868117 99868908 MER4E1 777 + 0 770 26214 247 1 0 26 10 7 151 9 0 6 1 0 101 21 13 103 0 1 115 chain 6394 chr7 159345973 + 99886832 99886905 HERVL-int 5654 + 3663 3736 79694 73 chain 80795 chr7 159345973 + 99978514 99979562 LTR13 1007 + 0 1007 21474 73 2 0 70 56 13 148 1 0 77 4 5 11 0 1 248 0 2 46 0 3 278 3 1 31 chain 11266 chr7 159345973 + 100013461 100013602 Tigger2 2703 + 2330 2477 68140 51 0 6 90 chain 10129 chr7 159345973 + 100041880 100042031 MER4B 649 + 37 229 70148 105 0 1 4 4 3 7 0 42 7 2 1 22 chain 3111 chr7 159345973 + 100043675 100043708 MER31A 484 + 77 110 98693 33 chain 23211 chr7 159345973 + 100116970 100117244 AluSc 308 + 5 279 52063 274 chain 29196 chr7 159345973 + 100161691 100162131 L1PA8 5853 + 5452 5853 43050 112 1 0 7 4 1 14 27 0 27 2 0 12 4 0 53 2 1 13 0 1 47 2 1 19 1 0 93 chain 2847 chr7 159345973 + 100382429 100382459 LTR12C 1709 + 1038 1068 101260 30 chain 22144 chr7 159345973 + 100479993 100480255 AluSc 308 + 32 294 53638 262 chain 4880 chr7 159345973 + 100482712 100482775 MER30B 195 + 113 174 86263 7 1 0 27 1 0 27 chain 79092 chr7 159345973 + 100718142 100719043 MER11D 897 + 0 897 21844 282 6 0 501 3 5 109 chain 411016 chr7 159345973 + 100841092 100846723 Harlequin-int 5206 + 141 5206 5015 8 0 2 60 0 3 74 0 1 29 0 1 57 10 0 48 0 11 45 1 0 5 3 0 348 4 5 169 1 0 84 5 9 74 5 0 115 1 0 274 3 4 961 0 9 265 0 1 618 6 7 236 16 12 534 5 51 171 321 0 285 1 0 4 0 1 150 0 4 185 307 0 127 0 2 16 chain 36772 chr7 159345973 + 100846731 100847185 LTR2 463 + 8 463 36906 351 15 16 88 chain 37528 chr7 159345973 + 100919617 100920085 LTR2 463 + 0 463 36384 95 13 3 123 0 5 237 chain 26464 chr7 159345973 + 100922281 100922662 LTR7 482 + 7 475 47031 94 0 50 73 5 37 44 0 3 57 1 2 51 14 15 42 chain 288494 chr7 159345973 + 100922671 100926403 HERVH-int 3825 + 0 3825 7179 114 0 1 218 13 13 18 15 16 93 15 17 40 1 0 11 1 0 4 0 1 12 23 22 25 73 165 9 1 0 123 0 1 320 15 0 207 9 0 28 0 2 10 1 0 39 0 2 260 7 8 227 0 4 82 0 5 40 0 3 268 0 1 5 5 4 472 0 2 516 37 38 139 0 4 236 chain 5332 chr7 159345973 + 100939506 100939568 MLT1A0 366 + 89 151 84045 62 chain 4066 chr7 159345973 + 100944266 100944341 MLT1I 406 + 312 388 90985 37 15 16 23 chain 28050 chr7 159345973 + 100961965 100962260 AluYa5 310 + 15 310 44788 295 chain 15644 chr7 159345973 + 100988739 100989086 THE1B 368 + 1 339 61477 62 9 1 44 38 34 27 1 0 6 24 18 7 1 0 13 1 5 10 7 15 58 12 11 27 chain 140455 chr7 159345973 + 101091762 101093354 SVA_C 1631 + 13 1631 13060 7 0 1 41 6 0 655 0 40 95 4 0 12 1 0 46 1 0 45 1 0 48 0 1 39 1 0 574 2 0 14 chain 25752 chr7 159345973 + 101190674 101190967 AluSp 311 + 4 297 48088 293 chain 14772 chr7 159345973 + 101225054 101225249 MER30 238 + 30 238 62566 77 4 17 114 chain 5641 chr7 159345973 + 101248931 101249002 MER21C 908 + 19 91 82599 21 0 1 50 chain 25366 chr7 159345973 + 101249908 101250205 AluSp 311 + 3 300 48674 297 chain 26759 chr7 159345973 + 101292743 101293507 LTR8 732 + 218 729 46601 87 16 43 10 282 0 72 4 5 11 2 0 42 59 58 103 9 13 67 chain 24297 chr7 159345973 + 101297799 101298101 AluSp 311 + 8 310 50330 302 chain 8121 chr7 159345973 + 101305990 101306315 L1MB3 1562 + 1254 1551 74585 32 125 122 13 1 0 4 41 17 12 11 12 58 1 0 27 chain 122906 chr7 159345973 + 101348407 101349869 LTR12C 1709 + 14 1709 15038 796 0 200 102 1 0 6 2 0 106 0 4 101 13 42 230 0 3 105 chain 35025 chr7 159345973 + 101379549 101379990 MER41A 554 + 0 448 38003 137 0 6 285 1 2 18 chain 5875 chr7 159345973 + 101520864 101520951 MSTD 398 + 268 356 81578 12 6 7 69 chain 4359 chr7 159345973 + 101565685 101565737 MLT2B4 540 + 13 65 89116 52 chain 4826 chr7 159345973 + 101607720 101607774 MLT2A1 477 + 348 402 86562 54 chain 9943 chr7 159345973 + 101635335 101635483 MLT2A2 560 + 388 560 70548 12 0 11 37 11 24 88 chain 10008 chr7 159345973 + 101649073 101649192 MER30 238 + 121 238 70409 50 2 0 67 chain 7010 chr7 159345973 + 101655965 101656047 MER4A1 472 + 0 82 77570 82 chain 28346 chr7 159345973 + 101663390 101663762 THE1C 375 + 0 375 44347 116 4 7 49 1 2 175 1 0 26 chain 12536 chr7 159345973 + 101677333 101677558 LTR8 732 + 507 732 65921 19 14 12 5 1 0 125 1 2 11 20 22 29 chain 14753 chr7 159345973 + 101747157 101747352 MER107 203 + 0 203 62595 151 1 6 15 7 10 21 chain 24056 chr7 159345973 + 101797816 101798147 L1PA8 5853 + 5524 5847 50719 40 1 0 45 2 0 73 1 0 5 2 1 12 1 0 40 2 1 19 6 5 82 chain 31593 chr7 159345973 + 101935023 101935427 LTR7 482 + 0 475 40675 69 8 46 109 0 1 33 0 32 185 chain 25659 chr7 159345973 + 102081316 102081965 THE1D 372 + 0 372 48234 62 0 14 115 0 3 55 5 9 74 298 0 40 chain 26200 chr7 159345973 + 102085334 102085703 THE1C 375 + 1 375 47421 23 4 5 52 1 2 101 13 17 149 1 0 25 chain 7930 chr7 159345973 + 102336868 102336967 HY3 101 + 0 99 75042 99 chain 25384 chr7 159345973 + 102393413 102393817 LTR35 598 + 45 434 48645 61 2 0 25 36 45 164 0 1 14 25 2 77 chain 34519 chr7 159345973 + 102479835 102480264 LTR13 1007 + 0 432 38341 73 2 0 52 0 2 114 1 3 137 4 5 46 chain 38283 chr7 159345973 + 102501497 102502422 L1PB1 5432 + 4851 5420 35855 50 2 4 75 0 3 30 330 0 90 1 2 9 3 0 24 2 0 9 1 0 11 5 1 8 2 0 53 3 1 16 1 0 44 1 0 15 4 0 12 9 0 19 2 0 5 1 0 14 2 0 24 1 0 13 0 1 8 0 3 9 1 0 16 chain 79414 chr7 159345973 + 102573491 102574462 LTR13 1007 + 0 1007 21762 73 2 0 52 0 2 114 0 2 138 4 5 90 0 26 238 0 1 74 0 1 92 0 5 94 chain 38283 chr7 159345973 + 102600658 102601583 L1PB1 5432 + 4851 5420 35854 50 2 4 75 0 3 30 330 0 90 1 2 9 3 0 24 2 0 9 1 0 11 5 1 8 2 0 53 3 1 16 1 0 44 1 0 15 4 0 12 9 0 19 2 0 5 1 0 14 2 0 24 1 0 13 0 1 8 0 3 9 1 0 16 chain 79711 chr7 159345973 + 102672563 102673534 LTR13 1007 + 0 1007 21692 73 2 0 52 0 2 114 0 2 138 4 5 90 0 26 238 0 1 74 0 1 92 0 5 94 chain 28991 chr7 159345973 + 102702993 102703305 AluYa5 310 + 1 310 43337 131 3 0 178 chain 81336 chr7 159345973 + 102710457 102711336 L1PA3long 6157 + 4251 5130 21364 879 chain 2620 chr7 159345973 + 102714144 102714172 MamRep4096 390 + 78 106 102881 28 chain 48847 chr7 159345973 + 102716227 102716816 L1PA5 6144 + 5554 6144 29994 170 1 2 84 0 1 179 6 0 9 0 7 126 3 1 11 chain 527996 chr7 159345973 + 102722562 102728522 L1PA5 6144 + 0 5963 1913 2431 0 4 1238 3 2 1194 0 1 424 1 0 669 chain 94202 chr7 159345973 + 102729028 102730209 L1PA7 6471 + 5337 6469 19015 173 1 2 17 56 0 92 0 3 74 0 2 398 0 1 370 chain 456238 chr7 159345973 + 102780677 102785918 L1PA4 6152 + 2 5228 4228 16 0 1 230 1 0 229 8 9 28 3 0 168 0 3 187 0 2 151 0 1 7 1 0 127 0 3 251 1 6 859 0 1 691 42 9 699 0 1 241 0 1 425 0 4 876 chain 409834 chr7 159345973 + 102800029 102805660 L1PB1 5432 + 78 5411 5025 67 0 1 40 1 2 101 3 9 65 14 15 28 3 2 199 0 1 21 0 3 119 0 6 6 0 3 275 0 3 61 0 1 38 0 1 60 12 16 187 16 10 93 0 1 45 5 6 102 0 3 8 0 1 37 310 5 596 11 4 174 7 0 19 0 3 69 2 1 33 11 29 154 0 1 23 0 1 904 5 6 262 0 1 626 1 2 474 0 1 15 3 0 17 1 0 13 5 4 7 4 0 11 3 1 50 7 6 11 2 0 43 1 0 15 1 0 5 2 0 11 9 0 16 8 5 11 6 4 12 0 8 8 9 0 16 1 0 13 1 0 7 chain 82508 chr7 159345973 + 102838510 102839506 LTR5B 1012 + 0 1012 21118 8 0 4 116 1 14 265 9 4 43 0 1 34 1 0 260 0 2 252 0 2 7 chain 19740 chr7 159345973 + 102852337 102852579 L1PB1 5432 + 4469 4708 56740 159 3 0 80 chain 31601 chr7 159345973 + 102852581 102852976 L1PB1 5432 + 4708 5103 40666 395 chain 2230 chr7 159345973 + 102852977 102853007 L1PB1 5432 + 5113 5146 105148 25 0 3 5 chain 6671 chr7 159345973 + 102853036 102853136 L1PB1 5432 + 5168 5266 78729 52 2 1 16 2 1 28 chain 5304 chr7 159345973 + 102853223 102853325 L1PB1 5432 + 5332 5427 84176 14 2 0 24 1 0 14 8 7 13 1 0 18 2 0 5 chain 105344 chr7 159345973 + 102853357 102854521 L1PA3long 6157 + 4983 6147 17638 1164 chain 20052 chr7 159345973 + 102941360 102941604 LTR8 732 + 479 723 56309 244 chain 385184 chr7 159345973 + 102953960 102958529 L1PA6 6164 + 0 6149 5394 236 0 2 42 0 1564 488 0 2 644 0 2 54 0 1 74 0 4 71 8 7 81 0 5 1914 0 1 123 1 0 474 2 1 41 0 1 159 12 13 145 chain 255844 chr7 159345973 + 102960202 102962987 L1PA2 6032 + 3234 6024 8094 1876 0 1 257 0 3 225 0 1 427 chain 30948 chr7 159345973 + 102973209 102973578 MER48 407 + 0 370 41174 260 0 1 109 chain 177267 chr7 159345973 + 102974059 102977040 HERVH48-int 3304 + 191 2717 10713 5 2 0 30 312 0 31 9 1 10 2 1 8 1 0 9 11 6 4 1 0 66 6 2 5 1 0 72 1 0 17 3 0 6 13 7 16 8 9 54 1 0 9 3 1 39 30 0 27 8 0 3 1 0 17 4 0 17 1 0 4 20 11 56 2 0 41 1 0 29 5 4 68 27 19 116 3 0 11 1 0 21 1 0 12 2 0 33 8 3 20 2 0 6 1 0 16 1 0 20 2 0 26 1 0 16 2 0 5 1 0 6 10 4 122 1 0 12 1 0 8 1 0 218 2 1 21 3 4 63 1 0 289 1 0 102 1 0 82 0 6 56 1 0 18 2 0 8 0 4 8 1 4 46 1 0 13 1 0 42 13 8 225 1 0 4 7 6 12 1 0 44 1 0 3 1 0 12 2 1 30 2 0 17 2 0 7 2 0 11 chain 34143 chr7 159345973 + 102978321 102978726 MER48 407 + 0 404 38606 400 1 0 4 chain 10230 chr7 159345973 + 102982653 102982842 THE1B 368 + 179 368 69946 4 1 0 15 0 3 8 1 5 13 25 23 68 5 1 49 chain 5556 chr7 159345973 + 102986847 102986916 L1PB3 3668 + 3408 3478 83007 24 0 1 45 chain 22969 chr7 159345973 + 103014368 103016312 L1PA15 4387 + 2015 3321 16833 14 0 1 245 324 0 140 0 3 106 0 1 174 8 10 21 0 2 106 307 0 95 1 0 25 2 0 6 10 0 41 2 1 162 2 0 153 chain 531263 chr7 159345973 + 103016334 103022487 L1PA5 6144 + 0 6141 1781 98 26 0 29 1 15 1046 0 1 238 2 0 103 0 2 596 0 1 184 7 5 250 0 3 859 0 1 74 1 0 697 8 0 414 0 1 696 0 1 170 0 3 654 chain 5624 chr7 159345973 + 103023356 103023832 L1PA15 4387 + 3878 4354 16833 12 11 9 34 1 0 12 0 22 137 2 1 26 2 1 53 1 0 23 14 9 50 19 15 32 3 1 14 5 0 25 chain 410478 chr7 159345973 + 103037831 103042824 L1P2 5180 + 2 5000 5019 148 1 0 44 1 0 49 1 0 68 4 0 135 8 0 69 1 0 50 1 0 222 0 15 105 0 1 597 9 5 597 1 4 270 1 0 275 0 1 248 6 2 255 0 2 63 0 1 267 0 4 639 8 6 65 0 2 514 4 8 267 chain 2611 chr7 159345973 + 103102745 103102773 L1MB3 1562 + 1527 1555 102923 28 chain 520045 chr7 159345973 + 103105965 103112763 L1PA7 6471 + 19 6470 2273 384 5 0 374 7 5 10 0 1 64 1 2 354 0 4 444 0 1 160 2 4 269 36 5 27 1 0 22 314 0 11 0 4 48 0 1 52 1 0 215 0 1 159 0 1 59 1 0 48 0 3 231 1 0 114 0 4 19 0 1 61 15 0 26 0 1 108 0 1 74 0 4 102 2 0 26 6 34 429 19 0 22 1 0 54 0 5 198 6 12 348 1 0 7 0 6 5 0 1 14 54 18 773 5 7 143 0 5 17 1 0 89 3 1 98 0 3 658 chain 36932 chr7 159345973 + 103152344 103152807 LTR2 463 + 0 463 36788 255 1 0 107 12 13 88 chain 122746 chr7 159345973 + 103154510 103156536 HERVIP10FH-int 2884 + 161 2041 15070 47 2 0 14 0 3 58 19 8 108 4 0 184 0 2 15 0 1 22 2 0 257 1 0 41 20 4 167 20 7 111 1 0 109 305 7 46 12 9 7 3 0 11 1 0 5 8 7 57 5 0 73 5 6 34 14 223 129 1 0 108 chain 53055 chr7 159345973 + 103156536 103157291 HERVE_a-int 7009 + 5749 6491 28553 38 0 2 175 2 0 102 1 0 14 1 0 4 1 0 55 5 3 19 1 0 9 5 4 79 2 0 138 20 19 22 6 5 18 14 13 7 1 0 16 chain 70435 chr7 159345973 + 103203006 103204063 Tigger1 2417 + 1086 2129 23884 70 13 10 72 1 2 145 13 39 100 0 5 83 98 28 289 0 1 136 0 3 26 0 23 11 chain 143530 chr7 159345973 + 103208381 103209967 L1PA3long 6157 + 4569 6157 12804 1119 0 2 467 chain 531875 chr7 159345973 + 103244606 103250743 L1PA5 6144 + 3 6143 1756 720 0 1 309 1 0 157 1 4 41 2 1 1927 0 1 510 2 1 604 0 2 118 0 5 890 1 0 95 0 1 736 1 0 9 5 0 8 chain 25733 chr7 159345973 + 103262545 103263005 L1PA15 4387 + 3901 4354 48120 31 1 0 25 12 25 122 2 1 25 1 0 54 4 3 20 4 0 8 1 0 47 0 1 4 11 8 17 4 1 13 0 1 4 28 21 22 chain 4517 chr7 159345973 + 103486529 103486591 L1PA7 6471 + 5587 5644 88221 36 5 0 21 chain 68295 chr7 159345973 + 103486599 103487412 L1PA7 6471 + 5653 6470 24387 570 1 0 89 2 4 139 1 4 11 chain 22232 chr7 159345973 + 103491566 103491827 AluSp 311 + 20 282 53505 8 1 0 247 0 2 5 chain 488565 chr7 159345973 + 103504465 103510637 L1PA7 6471 + 5 6466 3454 155 39 51 75 54 224 211 1 10 4 0 1 121 1 2 519 18 1 167 2 0 223 1 5 192 0 27 272 1 0 128 0 1 143 0 26 77 0 1 145 0 1 75 2 1 26 0 4 39 8 7 545 1 2 4 1 0 7 1 0 586 0 23 73 0 2 7 0 7 79 0 2 6 0 1 135 13 9 198 1 0 40 0 8 64 3 0 75 5 1 81 0 1 54 0 1 222 1 0 89 0 1 4 1 0 67 1 0 172 1 4 14 0 4 16 1 2 81 0 6 66 1 3 117 0 2 5 3 1 233 0 1 77 0 1 155 7 5 19 1 9 140 chain 2929 chr7 159345973 + 103602296 103602327 L1PA7 6471 + 5924 5955 100586 31 chain 43522 chr7 159345973 + 103602327 103602823 L1PA7 6471 + 5956 6452 32437 496 chain 207991 chr7 159345973 + 103674647 103677036 L1PA5 6144 + 3742 6131 9421 1552 6 5 444 0 1 387 chain 18051 chr7 159345973 + 103677036 103677259 L1PA7 6471 + 6084 6307 58611 223 chain 12961 chr7 159345973 + 103677259 103677405 L1PA7 6471 + 6308 6454 65164 146 chain 35494 chr7 159345973 + 103693066 103693508 L1PA8 5853 + 5416 5850 37727 148 1 0 46 2 0 68 2 1 14 2 0 47 2 1 19 1 0 90 chain 81284 chr7 159345973 + 103733060 103733949 L1PA2 6032 + 5139 6028 21371 889 chain 476674 chr7 159345973 + 103741901 103747240 L1PA4 6152 + 621 5968 3705 816 0 3 81 0 1 1649 1 0 2110 1 5 475 0 1 206 chain 322072 chr7 159345973 + 103786416 103790329 L1PA7 6471 + 2530 6461 6367 99 12 3 464 0 4 282 0 1 88 0 17 8 4 1 82 1 0 27 0 1 12 1 0 4 0 1 566 4 0 526 0 2 154 0 4 71 3 0 161 3 0 494 0 4 8 0 3 447 1 0 243 16 16 125 0 6 7 chain 153628 chr7 159345973 + 103799910 103801737 L1PA6 6164 + 3893 6162 12136 54 12 44 11 1 2 332 0 1 91 0 407 991 0 1 335 chain 6398 chr7 159345973 + 103845667 103845744 L1PA7 6471 + 4606 4687 79678 68 0 4 9 chain 13288 chr7 159345973 + 103845745 103845972 L1PA7 6471 + 4689 4853 64644 94 5 0 48 58 0 22 chain 7670 chr7 159345973 + 103845973 103846072 L1PA7 6471 + 4853 4952 75704 99 chain 20572 chr7 159345973 + 103846073 103846317 L1PA7 6471 + 4952 5196 55679 244 chain 52241 chr7 159345973 + 103846317 103846962 L1PA7 6471 + 5200 5851 28803 416 6 5 52 10 17 161 chain 52390 chr7 159345973 + 103846962 103847574 L1PA7 6471 + 5853 6468 28759 258 0 1 23 0 2 331 chain 4690 chr7 159345973 + 103849780 103849861 MER58C 217 + 129 206 87330 19 13 9 49 chain 36211 chr7 159345973 + 103850195 103850687 L1PBa1 4058 + 107 591 37263 192 30 25 105 2 0 133 2 1 28 chain 42554 chr7 159345973 + 103850689 103851455 L1PB1 5432 + 4669 5405 33030 124 22 22 156 0 1 20 1 4 44 0 1 5 0 1 5 2 1 45 12 7 9 1 0 22 1 0 10 17 12 11 2 0 43 1 0 8 2 1 16 1 0 44 1 0 15 1 0 4 61 46 26 1 0 19 1 0 9 0 1 4 chain 3186 chr7 159345973 + 103858339 103858379 MIR 256 + 215 255 98021 40 chain 249131 chr7 159345973 + 103872993 103912015 L1PA2 6032 + 2653 6030 8263 1870 35645 0 1507 chain 239286 chr7 159345973 + 103882508 103885729 L1PA7 6471 + 3518 6451 8488 11 1 0 41 0 8 235 0 4 102 0 1 359 0 4 518 0 1 183 6 7 629 1 0 273 0 2 179 306 0 142 1 0 234 chain 49621 chr7 159345973 + 103899028 103899629 L1P3 4156 + 3541 4139 29714 566 2 0 7 2 1 24 chain 9461 chr7 159345973 + 104004191 104004293 L1PA4 6152 + 5958 6060 71582 102 chain 17807 chr7 159345973 + 104030907 104031133 THE1C 375 + 155 375 58883 31 0 1 56 6 0 105 2 1 26 chain 215885 chr7 159345973 + 104058825 104061584 L1P2 5180 + 2 2785 9150 147 2 1 50 1 0 44 29 28 112 5 11 51 8 0 69 1 0 44 7 6 81 14 18 35 0 24 60 0 15 324 6 1 1196 7 0 466 chain 110995 chr7 159345973 + 104071608 104073010 LTR12C 1709 + 0 1709 16936 61 1 2 193 21 11 71 0 43 83 11 7 179 0 278 184 9 6 73 1 0 33 0 4 399 1 0 82 chain 87652 chr7 159345973 + 104082913 104084104 L1PA11 4918 + 3255 4502 20106 214 0 40 15 0 4 32 1 8 111 0 9 223 0 1 419 1 0 44 1 0 4 0 1 4 26 24 56 11 10 14 1 0 14 chain 85863 chr7 159345973 + 104084942 104085958 L1PA7 6471 + 5402 6424 20475 21 0 1 190 0 3 690 5 7 110 chain 113381 chr7 159345973 + 104158235 104159487 L1PA3long 6157 + 4905 6157 16622 399 1 0 294 0 1 558 chain 547595 chr7 159345973 + 104209736 104215880 L1PA3long 6157 + 6 6147 889 1395 9 0 10 0 9 435 10 0 215 0 1 1237 0 1 1048 0 4 291 0 1 1494 chain 3799 chr7 159345973 + 104217395 104217437 L1ME1 1623 + 177 219 92848 42 chain 27523 chr7 159345973 + 104234503 104234800 AluYa5 310 + 0 298 45556 131 0 1 166 chain 41719 chr7 159345973 + 104248289 104248819 L1PA8 5853 + 1341 1867 33537 186 1 0 79 0 2 63 16 8 113 0 3 72 chain 8737 chr7 159345973 + 104249120 104249220 L1P2 5180 + 2159 2259 73128 100 chain 549012 chr7 159345973 + 104276530 104282676 L1PA3long 6157 + 4 6146 808 454 12 6 2058 0 1 333 0 1 358 1 0 77 0 1 441 1 0 1530 3 0 43 0 1 112 1 3 677 0 1 45 chain 11196 chr7 159345973 + 104349594 104349730 L1PA7 6471 + 6332 6465 68251 127 3 0 6 chain 4942 chr7 159345973 + 104424581 104424687 MER20 218 + 51 162 85926 31 3 0 5 11 18 26 9 10 21 chain 32570 chr7 159345973 + 104440202 104440567 L1PA5 6144 + 5773 6137 39895 106 1 0 258 chain 27201 chr7 159345973 + 104450418 104450733 L1PA7 6471 + 6155 6470 45963 315 chain 4636 chr7 159345973 + 104493971 104494032 MER33 330 + 142 234 87619 44 0 31 17 chain 136462 chr7 159345973 + 104507141 104508618 L1PA2 6032 + 4551 6028 13394 1477 chain 5595 chr7 159345973 + 104511724 104511803 L1PB1 5432 + 5346 5422 82830 24 1 0 21 1 0 11 1 0 20 chain 21213 chr7 159345973 + 104521447 104521675 L1PA3long 6157 + 5055 5283 54867 228 chain 67674 chr7 159345973 + 104521675 104522411 L1PA3long 6157 + 5285 6021 24525 736 chain 11154 chr7 159345973 + 104522417 104522546 L1PA3long 6157 + 6028 6157 68339 129 chain 40848 chr7 159345973 + 104542774 104544039 L1PA8 5853 + 5316 5853 34062 248 1 0 45 2 0 14 1 0 55 2 1 9 1 0 12 2 0 40 728 9 11 2 1 92 chain 4770 chr7 159345973 + 104572176 104572252 MADE1 96 - 4 96 86852 33 8 24 35 chain 124346 chr7 159345973 + 104583085 104584468 L1PA4 6152 + 4764 6151 14795 318 0 1 215 0 3 850 chain 67296 chr7 159345973 + 104607912 104608651 L1PA4 6152 + 5406 6146 24622 94 0 1 645 chain 116411 chr7 159345973 + 104615852 104617194 L1PA7 6471 + 4674 6003 16154 726 0 1 147 15 0 74 0 2 86 1 0 293 chain 7471 chr7 159345973 + 104682322 104682416 MER5A1 166 + 43 140 76198 75 0 3 19 chain 286370 chr7 159345973 + 104687990 104691768 HERVL-int 5654 + 105 4195 7249 105 11 6 371 1 2 93 5 4 19 0 1 102 5 6 19 0 1 13 17 39 268 0 108 94 5 4 292 38 38 560 3 1 718 1 2 814 1 2 96 0 1 48 1 0 34 0 2 26 0 184 8 1 0 9 chain 4755 chr7 159345973 + 104691787 104691841 THE1C-int 1605 + 153 207 86931 54 chain 102360 chr7 159345973 + 104691841 104693382 THE1C-int 1605 + 153 1599 18024 105 0 1 185 86 12 55 1 0 227 7 16 18 67 0 199 6 15 252 0 6 36 5 6 11 11 14 136 1 9 104 9 19 20 chain 121657 chr7 159345973 + 104720150 104721546 L1PA6 6164 + 4763 6162 15235 552 2 6 694 1 0 147 chain 77272 chr7 159345973 + 104747921 104748888 LTR5_Hs 974 + 0 974 22253 289 0 1 40 0 1 136 0 1 188 1 0 168 0 7 22 20 18 103 chain 79733 chr7 159345973 + 104757038 104758181 L1PA16 3655 + 2423 3578 21686 4 0 1 209 10 11 18 0 1 8 2 1 51 1 0 176 1 0 8 5 4 7 0 7 62 8 7 202 6 5 85 2 0 124 1 0 105 20 31 28 chain 4592 chr7 159345973 + 104833136 104833195 MLT2A1 477 + 317 375 87835 6 1 0 52 chain 5863 chr7 159345973 + 104833434 104833504 MLT2A1 477 + 316 385 81636 7 1 0 62 chain 524137 chr7 159345973 + 104864133 104877278 L1PA4 6152 + 6 6143 2082 235 4 1 214 6 30 237 0 17 496 1 0 32 0 1 1908 1 0 1179 0 4 688 13 0 180 1 0 244 7035 0 671 chain 26019 chr7 159345973 + 104880484 104880886 Tigger1 2417 + 1103 1480 47694 11 0 2 176 6 0 12 16 0 59 19 14 59 2 0 37 0 2 5 chain 12205 chr7 159345973 + 104928496 104928712 MLT1B 390 + 197 378 66465 29 19 9 21 25 0 122 chain 105322 chr7 159345973 + 104939976 104941430 LTR12C 1709 + 1 1709 17641 264 0 2 32 1 2 68 0 1 279 0 280 68 0 1 73 0 47 100 17 10 311 2 1 32 0 7 6 0 23 38 100 0 63 chain 5746 chr7 159345973 + 104941267 104941334 LTR12C 1709 + 1515 1581 62718 43 1 0 23 chain 3338 chr7 159345973 + 104943368 104943449 MER96B 391 + 236 318 96712 7 1 0 25 2 0 5 19 23 22 chain 61141 chr7 159345973 + 104958934 104960042 L1PA8 5853 + 5080 5853 26075 163 0 3 141 312 0 77 28 8 130 15 13 64 1 0 8 2 1 52 2 1 19 1 0 93 chain 4944 chr7 159345973 + 105059157 105059218 Tigger7 736 + 495 556 85915 61 chain 89630 chr7 159345973 + 105148639 105149665 LTR5A 1029 + 0 1029 19741 13 0 4 131 1 0 881 chain 46108 chr7 159345973 + 105165377 105166046 LTR12 884 + 0 869 31012 24 1 0 84 0 1 22 0 91 75 0 4 40 39 0 34 29 39 266 0 134 55 chain 2222 chr7 159345973 + 105165623 105165662 LTR12 884 + 209 250 73695 13 1 3 25 chain 22395 chr7 159345973 + 105232184 105232482 AluSp 311 + 0 306 53282 47 5 11 49 1 2 165 7 8 24 chain 12363 chr7 159345973 + 105234911 105235107 MER30 238 + 0 227 66209 13 2 13 67 15 38 59 3 0 37 chain 214935 chr7 159345973 + 105258528 105261033 L1PA6 6164 + 3646 6162 9176 236 2 0 479 0 4 107 0 1 48 2 1 121 2 0 669 0 4 831 0 7 8 chain 66682 chr7 159345973 + 105300575 105303322 L1PA6 6164 + 5215 6013 24777 100 1 0 216 2 1 251 1947 0 230 chain 12843 chr7 159345973 + 105303323 105303470 L1PA6 6164 + 6015 6162 65371 147 chain 31727 chr7 159345973 + 105360777 105361167 L1P1 4361 + 3933 4328 40554 167 3 1 47 1 0 141 0 9 7 1 0 23 chain 57505 chr7 159345973 + 105362530 105363196 L1PA5 6144 + 5467 6143 27105 91 0 1 260 0 5 95 0 4 220 chain 83157 chr7 159345973 + 105363214 105364190 L1PA6 6164 + 5187 6161 20990 24 0 4 473 8 5 23 3 0 445 chain 16340 chr7 159345973 + 105437468 105437669 THE1C 375 + 154 356 60583 115 0 1 86 chain 10422 chr7 159345973 + 105514643 105515466 LTR24B 570 + 19 570 69571 27 2 0 42 0 3 9 608 299 12 6 0 7 29 71 81 chain 72683 chr7 159345973 + 105583823 105584777 MER11B 1079 + 0 1057 23384 55 1 95 169 0 1 154 0 3 83 18 14 98 2 1 96 2 4 106 0 1 117 0 6 27 0 1 26 chain 8313 chr7 159345973 + 105603295 105603411 MER50 708 + 561 683 74127 73 10 16 33 chain 9219 chr7 159345973 + 105855750 105855872 MER2 342 + 91 212 72081 23 2 1 97 chain 10069 chr7 159345973 + 105859511 105859639 Tigger3a 397 + 139 264 70259 57 3 0 68 chain 23806 chr7 159345973 + 105882210 105882506 THE1A 353 + 0 294 51093 109 2 1 92 1 0 92 chain 16516 chr7 159345973 + 105936575 105936779 AluSp 311 + 98 294 60347 189 8 0 7 chain 44336 chr7 159345973 + 105937820 105938366 MER41A 554 + 0 547 31927 349 1 2 196 chain 54258 chr7 159345973 + 106078531 106079299 MER4E 760 + 0 760 28132 24 3 0 127 49 52 20 3 0 16 1 0 22 0 1 8 4 0 93 1 3 19 0 1 60 1 0 83 1 0 4 7 5 222 chain 44104 chr7 159345973 + 106130037 106130565 MER41A 554 + 16 554 32080 190 0 11 102 1 0 235 chain 26655 chr7 159345973 + 106200684 106200966 AluYg6 310 + 26 308 46753 282 chain 155069 chr7 159345973 + 106208730 106210560 L1P1 4361 + 4 1835 12051 201 1 0 525 4 3 345 1 0 77 0 3 276 0 1 400 chain 370695 chr7 159345973 + 106211792 106216013 L1PA5 6144 + 1823 6087 5637 116 1 0 36 0 4 467 3 1 553 1 0 206 0 1 245 0 1 229 1 0 260 0 2 40 0 3 56 3 12 102 0 1 400 0 1 191 0 22 525 0 4 786 chain 29170 chr7 159345973 + 106267560 106267869 AluYa5 310 + 1 310 43095 309 chain 164675 chr7 159345973 + 106297325 106299142 L1PA3long 6157 + 4320 6147 11439 676 0 10 1141 chain 297379 chr7 159345973 + 106321949 106325282 L1PA3long 6157 + 2574 5911 6908 2413 0 2 394 0 1 6 0 1 520 chain 25986 chr7 159345973 + 106332404 106332794 MER51B 395 + 0 395 47734 165 2 3 60 28 27 16 0 1 15 1 0 18 0 1 27 1 5 57 chain 13252 chr7 159345973 + 106342616 106342882 MER51-int 1546 + 1302 1542 64706 104 86 60 76 chain 28294 chr7 159345973 + 106342899 106343290 MER51B 395 + 5 395 44426 222 31 30 138 chain 384157 chr7 159345973 + 106359871 106364648 L1PA7 6471 + 1659 6465 5409 341 1 2 152 6 11 282 0 1 84 26 0 100 7 0 58 0 1 367 2 0 47 0 8 7 6 12 85 16 20 6 4 0 107 0 1 193 0 4 478 0 2 101 3 4 535 0 4 199 1 17 267 3 0 296 0 8 163 2 0 226 0 1 105 1 12 336 1 0 163 chain 127844 chr7 159345973 + 106440167 106441688 L1P1 4361 + 778 2307 14305 89 6 9 534 3 8 889 chain 3845 chr7 159345973 + 106441960 106442085 MER5A1 166 + 53 162 92535 26 18 19 22 40 23 19 chain 20745 chr7 159345973 + 106484085 106484325 AluSc 308 + 17 257 55439 240 chain 32283 chr7 159345973 + 106491302 106491763 L1P3 4156 + 0 452 40124 31 0 13 107 21 0 100 1 0 71 1 0 44 9 10 16 9 8 9 0 1 42 chain 451544 chr7 159345973 + 106492979 106498492 L1PA7 6471 + 406 6466 4348 531 42 23 353 0 7 708 0 1 66 0 589 78 11 0 722 27 16 598 0 1 233 0 1 103 21 4 959 0 1 110 0 5 951 chain 35135 chr7 159345973 + 106567352 106567833 LTR7B 505 + 0 497 37937 95 0 31 81 34 0 24 0 21 78 0 1 110 0 2 5 9 6 26 2 0 17 chain 32063 chr7 159345973 + 106569509 106569936 LTR10F 562 + 0 554 40295 24 4 13 39 0 5 35 0 115 67 1 0 81 0 1 13 3 1 160 chain 13481 chr7 159345973 + 106581251 106581536 L1PA15 4387 + 4087 4355 64334 17 1 0 26 30 29 26 1 0 19 4 0 12 6 5 46 6 3 43 2 0 13 10 6 23 chain 21080 chr7 159345973 + 106582198 106582456 MER4A1 472 + 200 458 55027 258 chain 5344 chr7 159345973 + 106633558 106633670 MLT1C 463 + 351 463 83981 24 35 34 7 0 1 46 chain 506867 chr7 159345973 + 106671762 106678583 L1PA6 6164 + 0 6152 2900 566 2 1 483 1 0 46 2 40 232 8 1 210 3 0 46 0 1 623 0 14 487 1 0 439 0 1 213 2 1 115 4 5 58 733 0 113 1 2 102 15 16 557 0 1 440 0 1 42 0 1 156 0 14 337 0 1 537 0 4 96 6 5 145 chain 60140 chr7 159345973 + 106675311 106676011 L1PA5 6144 + 5436 6137 26333 374 0 1 326 chain 523859 chr7 159345973 + 106709408 106715574 L1PA6 6164 + 0 6162 2098 165 6 5 339 2 1 57 1 0 201 0 1 56 6 5 424 1 0 218 0 1 429 0 1 310 0 2 119 11 7 50 0 1 797 0 1 1075 1 0 7 0 1 1220 0 1 618 3 0 50 chain 252500 chr7 159345973 + 106724150 106726988 L1PA5 6144 + 2519 5356 8167 760 1 0 2077 chain 60704 chr7 159345973 + 106762647 106763353 L1PA7 6471 + 5757 6464 26174 563 0 1 143 chain 18403 chr7 159345973 + 106772209 106772559 L1PB1 5432 + 5103 5420 58240 11 1 0 24 1 0 9 1 0 11 4 0 9 2 0 53 2 1 16 1 0 44 1 0 15 4 1 14 9 0 16 24 19 24 1 0 21 2 0 13 1 0 16 chain 488028 chr7 159345973 + 106918816 106924955 L1PA6 6164 + 8 6162 3469 130 21 16 8 0 5 282 8 0 120 1 0 49 0 1 168 0 17 129 1 0 153 0 3 157 0 1 366 219 1 14 0 218 478 4 1 696 1 2 152 10 10 4 0 1 50 0 4 31 1 0 5 5 3 247 2 0 26 1 0 2588 0 6 12 chain 121729 chr7 159345973 + 106937244 106938636 L1PA5 6144 + 4742 6131 15223 552 1 0 477 0 1 51 3 0 308 chain 51748 chr7 159345973 + 106967417 106968006 LTR10C 591 + 0 591 28954 508 0 2 81 chain 4967 chr7 159345973 + 107111337 107111598 L1M1 2793 + 495 695 85817 4 1 0 10 1 0 10 9 6 9 1 0 6 1 0 14 2 0 8 3 0 8 11 9 11 118 71 34 chain 17166 chr7 159345973 + 107147102 107147319 AluYc 301 + 61 279 59610 59 0 2 95 13 12 50 chain 40801 chr7 159345973 + 107155719 107156266 L1PA8 5853 + 5307 5853 34094 236 0 1 20 1 0 45 2 0 73 1 0 6 1 0 52 2 1 12 5 8 76 4 5 11 chain 175122 chr7 159345973 + 107243549 107246421 L1PA14 3548 + 802 3456 10823 185 0 2 196 1 0 25 308 0 109 7 8 61 0 3 46 0 1 5 11 11 49 1 0 7 1 5 30 8 14 49 38 54 253 2 0 78 0 88 456 1 0 87 3 0 6 0 3 45 10 10 223 7 6 21 3 1 14 2 0 47 2 0 5 2 0 104 13 9 13 9 6 82 1 0 79 0 1 29 20 15 34 26 22 14 1 0 43 chain 35645 chr7 159345973 + 107272113 107272561 MER4A1 472 + 0 472 37636 230 1 22 142 7 10 68 chain 119488 chr7 159345973 + 107351132 107352469 L1PA4 6152 + 4813 6151 15610 488 1 0 390 0 2 283 0 9 96 9 0 70 chain 232954 chr7 159345973 + 107377911 107381021 L1P2 5180 + 635 3880 8665 106 21 0 46 0 15 242 0 1 5 2 1 249 1 0 140 1 3 217 0 3 5 5 4 647 9 0 252 1 5 32 0 1 171 6 10 57 10 106 58 7 20 151 3 1 30 1 0 19 0 4 282 0 4 290 9 33 35 chain 214665 chr7 159345973 + 107381038 107384319 MER61-int 3695 + 579 3695 9185 59 0 96 45 0 3 14 5 4 45 13 18 199 0 1 60 0 8 34 0 3 13 1 2 5 0 4 72 0 3 128 16 14 94 4 5 67 5 9 39 0 5 79 0 1 380 323 3 30 7 11 292 0 1 164 1 0 24 1 0 141 0 4 10 1 0 95 1 0 64 7 16 195 15 14 12 0 1 92 15 26 71 2 1 217 0 1 25 1 0 45 15 14 38 chain 143945 chr7 159345973 + 107387677 107389878 HERVK22-int 3844 + 1401 3466 12775 494 10 18 170 0 3 28 0 1 55 0 1 480 13 17 30 2 1 280 94 0 69 1 0 19 3 1 52 1 0 4 1 0 18 8 7 28 1 0 21 2 0 39 17 12 43 2 0 14 173 131 29 chain 17654 chr7 159345973 + 107449077 107449355 L1PA8 5853 + 5595 5853 59062 13 2 0 70 2 1 11 1 0 49 6 5 16 1 0 42 13 0 5 2 1 45 chain 45903 chr7 159345973 + 107451280 107451926 Tigger2 2703 + 2010 2664 31102 178 1 4 126 1 0 27 21 25 37 18 20 237 chain 15374 chr7 159345973 + 107494360 107494693 Tigger3c 601 + 1 587 61823 26 11 27 46 43 250 20 10 14 44 0 25 77 27 28 29 chain 469614 chr7 159345973 + 107507934 107513247 L1PA4 6152 + 42 5340 3866 273 2 1 264 1 0 254 17 0 600 1 0 435 1 0 331 0 2 560 0 4 2574 chain 404220 chr7 159345973 + 107516562 107522186 L1PA8 5853 + 387 5755 5101 208 7 11 40 0 4 365 0 13 126 3 2 302 2 1 80 304 0 76 7 0 268 4 3 437 0 1 119 0 1 48 0 8 76 0 1 34 1 0 323 4 8 19 0 3 82 1 0 168 0 1 376 24 23 293 0 2 591 4 5 267 6 6 221 14 16 69 3 5 70 11 17 168 0 1 137 11 23 59 1 0 44 6 4 67 18 16 6 0 1 37 4 3 13 chain 347661 chr7 159345973 + 107532986 107537748 L1PA7 6471 + 1112 6469 5940 152 5 15 37 1 0 233 7 6 41 0 3 34 0 2 885 0 2 119 7 3 23 6 6 131 1 2 226 330 0 11 0 330 79 0 5 46 2 0 44 5 9 24 0 2 222 5 9 65 4 1 127 0 4 230 0 4 96 1 34 295 0 8 455 17 3 156 2 555 42 9 19 32 0 1 27 26 0 295 0 2 195 2 0 10 chain 13038 chr7 159345973 + 107637389 107637622 LTR24B 570 + 0 237 65047 38 19 20 20 25 23 83 0 5 48 chain 4732 chr7 159345973 + 107672326 107672408 MADE1 96 + 0 96 87066 30 8 6 12 2 18 30 chain 462325 chr7 159345973 + 107732827 107738982 HERVL-int 5654 + 0 5645 4069 19 2 0 4 0 1 38 0 1 6 1 0 228 4 0 351 2 1 100 0 3 156 0 2 158 0 1 21 0 2 31 0 1 716 0 11 164 32 16 437 0 5 686 1 0 670 519 0 225 4 0 523 11 9 34 0 6 273 1 4 321 0 1 260 0 3 157 chain 31462 chr7 159345973 + 107738991 107739462 MLT2A1 477 + 0 477 40768 28 0 5 135 12 7 112 0 2 87 54 58 43 chain 3239 chr7 159345973 + 107778633 107778671 MADE1 96 - 58 96 97583 38 chain 24739 chr7 159345973 + 107829630 107829890 AluYa5 310 + 38 298 49671 260 chain 13546 chr7 159345973 + 107838648 107838836 MER30 238 + 26 228 64257 81 4 21 71 4 1 28 chain 160699 chr7 159345973 + 107840488 107842311 L1PA5 6144 + 4312 6129 11702 220 10 1 405 0 1 358 0 4 139 1 0 445 1 0 244 chain 134272 chr7 159345973 + 107847530 107849053 SVA_C 1631 + 10 1623 13621 6 3 0 14 1 0 7 0 4 6 1 0 5 0 2 783 0 88 29 1 0 47 1 3 619 chain 103417 chr7 159345973 + 107887805 107889482 LTR12C 1709 + 0 1709 17898 274 22 22 84 0 167 23 5 7 122 41 0 138 1 0 202 78 0 47 26 32 89 24 0 8 20 13 31 0 5 143 98 0 32 3 4 13 0 101 70 1 0 82 chain 17009 chr7 159345973 + 108038549 108038771 MER30 238 + 0 230 59796 106 8 16 108 chain 49489 chr7 159345973 + 108039803 108040479 L1PA13 3608 + 2758 3433 29770 26 0 1 107 8 9 104 1 5 122 1 0 27 1 0 114 2 0 61 1 0 28 0 1 28 10 7 35 chain 32858 chr7 159345973 + 108170331 108170783 MER4A1 472 + 0 472 39622 175 1 0 36 10 35 140 9 4 29 0 1 52 chain 20778 chr7 159345973 + 108200625 108201118 L1PB1 5432 + 4986 5427 55393 86 0 1 25 49 15 22 1 0 9 1 0 14 16 10 52 2 1 15 1 0 43 41 29 16 36 29 17 0 14 7 1 0 13 2 1 17 2 0 5 chain 263698 chr7 159345973 + 108218396 108221855 L1PB1 5432 + 2002 5420 7862 456 0 4 32 5 0 345 1 3 82 1 7 83 1 0 4 10 11 706 0 1 76 8 12 58 0 1 745 3 0 77 0 2 105 4 3 288 1 2 11 5 0 22 1 0 9 1 0 9 6 2 11 3 1 49 1 0 18 1 0 38 6 5 16 3 0 12 9 0 19 24 19 24 1 0 21 18 0 13 1 0 16 chain 130146 chr7 159345973 + 108255148 108256632 SVA_B 1603 + 0 1595 14019 19 22 25 449 0 77 179 0 40 132 4 0 42 4 0 27 1 0 605 chain 4094 chr7 159345973 + 108269215 108269267 MER96B 391 + 142 194 90825 52 chain 44351 chr7 159345973 + 108337288 108337828 LTR17 781 + 259 775 31917 68 1 0 377 22 0 66 1 0 5 chain 370009 chr7 159345973 + 108339529 108343836 HERV17-int 4347 + 12 4347 5658 15 1 0 52 1 0 13 0 1 20 2 0 18 9 8 75 8 8 75 1 0 572 0 1 18 0 3 456 0 1 11 0 23 86 2 3 132 0 1 375 0 1 275 7 10 524 0 1 312 3 0 640 0 3 562 2 0 40 chain 28392 chr7 159345973 + 108344166 108344490 LTR17 781 + 0 324 44280 324 chain 4578 chr7 159345973 + 108346919 108347014 MER33 330 + 195 291 87916 12 8 11 32 14 12 29 chain 3568 chr7 159345973 + 108493108 108493152 MLT1H2 457 + 398 442 94671 44 chain 224550 chr7 159345973 + 108507775 108510190 L1PA2 6032 + 3617 6032 8908 2415 chain 5200 chr7 159345973 + 108513060 108513120 MLT1A0 366 + 256 316 84677 60 chain 37283 chr7 159345973 + 108523306 108523815 MER84 505 + 0 505 36560 333 11 13 105 20 14 40 chain 120374 chr7 159345973 + 108538300 108539880 HERVL-int 5654 + 3524 5654 15467 136 7 6 91 30 1 75 11 583 196 1 0 62 52 52 31 1 7 9 6 0 126 1 4 40 0 1 329 0 1 82 0 3 127 0 1 167 chain 29049 chr7 159345973 + 108539882 108540367 MLT2A1 477 + 2 477 43253 86 0 38 16 5 6 19 6 3 107 1 0 106 57 23 13 6 0 8 1 0 6 5 1 43 chain 88296 chr7 159345973 + 108615653 108616609 L1PA2 6032 + 5076 6032 19987 956 chain 27309 chr7 159345973 + 108669273 108669677 MLT2A1 477 + 0 477 45815 142 0 1 4 28 32 20 1 0 172 5 75 11 1 0 20 chain 450472 chr7 159345973 + 108669677 108676396 HERVL-int 5654 + 0 5654 4382 52 10 9 37 3 4 7 1 0 761 14 19 124 0 1 6 1 0 382 2 0 175 9 5 80 8 9 47 1069 0 397 4 5 115 16 17 247 0 6 175 11 10 4 0 1 32 4 1 5 0 3 447 0 1 232 0 1 177 1 0 538 11 1 223 18 17 190 1 0 485 0 1 103 0 1 58 5 6 121 1 5 87 0 1 223 chain 66006 chr7 159345973 + 108671684 108672405 SVA_D 2077 + 1132 2077 24958 53 0 225 649 1 0 18 chain 30196 chr7 159345973 + 108676396 108676787 MLT2A1 477 + 0 396 41852 142 0 1 26 0 4 26 1 0 124 1 0 61 0 2 10 chain 162132 chr7 159345973 + 108729347 108731167 L1PA4 6152 + 1928 3754 11603 205 1 2 99 0 1 151 0 4 1364 chain 86924 chr7 159345973 + 108757114 108758445 L1PA13 3608 + 138 1461 20245 15 11 10 15 3 0 25 26 15 69 6 4 125 1 0 12 1 0 16 3 1 16 6 2 19 2 1 17 3 1 15 3 1 17 1 0 96 2 0 268 2 29 123 1 0 56 11 14 78 32 15 78 7 20 150 chain 2774 chr7 159345973 + 108867377 108867430 MER53 195 + 117 172 101797 13 10 12 30 chain 29877 chr7 159345973 + 108877374 108877868 HUERS-P2-int 2744 + 2271 2742 42155 126 0 1 41 0 2 95 30 18 27 24 20 14 1 0 40 3 0 34 1 0 8 3 1 5 2 0 12 2 0 6 0 1 20 chain 6042 chr7 159345973 + 108888817 108888891 L1PA16 3655 - 660 738 80919 10 0 4 64 chain 79408 chr7 159345973 + 108961535 108962490 L1PA7 6471 + 5017 5980 21764 133 5 6 151 3 4 223 0 3 77 0 3 363 chain 189048 chr7 159345973 + 109011781 109013916 L1P1 4361 + 2195 4328 10162 1955 1 0 155 1 0 23 chain 201920 chr7 159345973 + 109041152 109043624 L1PA7 6471 + 3965 6470 9642 210 12 11 470 1 14 291 2 1 5 0 1 16 0 1 16 1 2 174 5 7 46 0 3 168 0 2 12 0 2 197 0 3 661 0 2 28 1 3 142 0 3 14 chain 130929 chr7 159345973 + 109085162 109086796 L1PA7 6471 + 4826 6461 13936 211 0 3 69 4 0 77 0 9 33 0 4 241 0 5 124 0 4 14 13 17 256 0 1 114 27 0 51 1 2 194 0 1 205 chain 33807 chr7 159345973 + 109088266 109088673 L1PA6 6164 + 5749 6156 38841 234 0 2 7 3 1 163 chain 153634 chr7 159345973 + 109096737 109098378 L1HS 6032 + 4390 6031 12135 1641 chain 76547 chr7 159345973 + 109266859 109267913 MER11C 1089 + 0 1073 22427 146 8 9 92 4 13 57 5 9 58 2 1 305 1 5 4 1 0 38 0 1 95 30 31 39 0 1 16 1 0 144 0 1 8 chain 57126 chr7 159345973 + 109298988 109299668 LTR12_ 688 + 0 681 27223 49 0 1 631 chain 49681 chr7 159345973 + 109304305 109304917 LTR12_ 688 + 0 673 29692 89 0 41 13 0 24 74 5 1 431 chain 7074 chr7 159345973 + 109325084 109325170 MER57A1 433 + 184 270 77357 86 chain 6883 chr7 159345973 + 109325278 109325362 MER57A1 433 + 186 270 78019 84 chain 18077 chr7 159345973 + 109374442 109374685 L1PB 1623 + 1211 1453 58581 86 0 2 6 2 0 141 1 0 7 chain 462442 chr7 159345973 + 109381435 109386656 L1PA4 6152 + 915 6143 4066 1267 0 2 1766 2 0 89 4 5 130 0 1 179 0 1 280 1 0 230 1 0 554 0 6 718 chain 60174 chr7 159345973 + 109451800 109452544 LTR17 781 + 0 763 26327 44 4 2 281 1 0 382 6 28 26 chain 28119 chr7 159345973 + 109457735 109458036 AluYk11 308 + 0 301 44686 301 chain 30160 chr7 159345973 + 109461371 109461963 L1PB1 5432 + 4880 5423 41880 215 28 6 14 6 0 23 1 0 8 1 0 9 8 4 9 2 0 45 22 31 37 1 0 15 54 39 11 2 0 24 1 0 21 1 0 13 1 0 14 1 0 5 chain 27295 chr7 159345973 + 109491252 109491575 L1PA5 6144 + 5820 6144 45829 63 1 2 116 0 1 30 1 0 112 chain 45181 chr7 159345973 + 109524795 109525317 L1PA5 6144 + 5610 6132 31479 522 chain 13752 chr7 159345973 + 109673228 109673416 L1P3 4156 + 3954 4139 63943 147 17 14 24 chain 16458 chr7 159345973 + 109713110 109713367 L1PA13 3608 + 3198 3443 60436 33 0 1 41 2 0 62 1 0 56 1 0 5 2 0 27 14 7 13 chain 479951 chr7 159345973 + 109719133 109724638 L1PA4 6152 + 12 5522 3634 2992 0 1 204 2 1 11 0 1 1125 0 4 1171 chain 40737 chr7 159345973 + 109761655 109762234 L1PA7 6471 + 5928 6469 34130 38 1 0 56 43 11 158 7 3 52 0 2 137 1 0 74 2 0 10 chain 3831 chr7 159345973 + 109773694 109773756 L1PB1 5432 + 489 551 92629 44 1 0 5 1 2 11 chain 467497 chr7 159345973 + 109794983 109800334 L1PA4 6152 + 0 5351 3924 384 0 1 343 3 4 308 1 0 2366 9 11 5 2 0 527 1 0 235 0 1 362 1 0 575 0 1 19 1 0 209 chain 26770 chr7 159345973 + 109806893 109807246 THE1B 368 + 0 368 46583 44 0 6 6 0 9 101 1 0 29 1 3 95 1 0 75 chain 120673 chr7 159345973 + 109807281 109808817 THE1B-int 1605 + 34 1605 15412 199 0 1 192 0 25 68 3 2 35 0 6 113 0 3 84 16 17 826 chain 44138 chr7 159345973 + 109858289 109858830 L1PA7 6471 + 5929 6468 32055 273 0 1 250 4 1 14 chain 262747 chr7 159345973 + 109860479 109863648 L1PA6 6164 + 2989 6162 7887 175 0 2 19 5 0 4 0 1 276 0 2 369 0 1 506 16 22 282 0 1 22 3 2 99 5 2 708 2 0 234 6 6 97 1 2 331 0 1 9 chain 4911 chr7 159345973 + 109874206 109874390 L1MC1 2226 + 1998 2159 86102 43 28 25 16 5 0 12 55 41 17 1 0 7 chain 61271 chr7 159345973 + 109889164 109889930 L1PA7 6471 + 5674 6450 26044 430 0 4 151 30 28 77 3 11 75 chain 16920 chr7 159345973 + 109900886 109901079 L1PA4 6152 + 5947 6140 59885 193 chain 541818 chr7 159345973 + 109905428 109914224 L1PA3long 6157 + 0 6157 1217 574 2646 0 554 0 1 61 0 3 528 0 1 1575 0 3 214 2 1 2642 chain 105188 chr7 159345973 + 109907515 109908641 L1HS 6032 + 4906 6032 17661 1126 chain 21566 chr7 159345973 + 109958925 109959185 L1PA7 6471 + 6209 6470 54415 243 0 1 17 chain 3988 chr7 159345973 + 109986934 109986979 MLT1B 390 + 334 379 91529 45 chain 146227 chr7 159345973 + 110099259 110101470 L1PB1 5432 + 3144 5422 12598 56 2 0 171 1 2 13 2 0 45 0 1 306 6 5 52 20 124 107 5 9 416 9 5 172 3 0 80 3 0 54 90 91 250 14 12 29 1 0 14 16 10 52 2 1 12 1 3 45 1 0 7 59 44 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 177416 chr7 159345973 + 110121113 110123418 L1PA3long 6157 + 1780 6157 10705 125 0 1 102 34 8 881 6 10 142 1 2 32 4 36 72 1 0 92 0 2060 338 0 2 231 1 0 243 chain 224288 chr7 159345973 + 110123421 110126250 L1PA8 5853 + 2991 5844 8917 784 11 20 248 0 2 9 0 4 837 7 19 92 2 7 551 1 0 46 2 0 70 1 0 7 2 1 5 1 0 47 2 1 18 2 1 84 chain 13733 chr7 159345973 + 110127522 110127671 L1PA2 6032 + 5879 6028 63969 149 chain 6703 chr7 159345973 + 110159148 110159253 MER30 238 + 130 232 78633 49 14 11 42 chain 41466 chr7 159345973 + 110163957 110164420 L1PA5 6144 + 5674 6137 33698 463 chain 29191 chr7 159345973 + 110232875 110233186 AluYa5 310 + 0 310 43060 123 1 0 187 chain 7150 chr7 159345973 + 110239657 110239796 L1MA3 4352 + 4177 4314 77099 23 14 20 16 6 2 20 2 0 24 1 0 6 1 0 26 chain 31378 chr7 159345973 + 110241762 110242120 L1PA4 6152 + 5784 6143 40828 218 1 3 134 1 0 4 chain 9292 chr7 159345973 + 110253947 110254104 MER30 238 + 47 227 71927 46 0 3 10 7 24 22 6 12 26 3 0 37 chain 13538 chr7 159345973 + 110263350 110263534 Tigger3b 1229 + 390 565 64270 156 10 1 18 chain 60969 chr7 159345973 + 110267057 110267713 L1PA2 6032 + 4219 4875 26115 656 chain 33677 chr7 159345973 + 110285929 110286335 L1P1 4361 + 3935 4341 38947 89 0 3 123 1 0 154 2 1 23 2 1 12 chain 57020 chr7 159345973 + 110288502 110289267 MER4E1 777 + 0 772 27260 23 0 7 265 1 0 137 0 3 101 31 15 53 16 30 138 chain 67802 chr7 159345973 + 110320009 110321090 MER11A 1151 + 1 1151 24495 64 0 1 19 0 91 54 1 0 64 4 0 32 0 2 51 0 3 6 10 11 41 5 6 5 0 1 84 1 8 121 13 4 14 6 7 53 0 4 41 50 0 33 8 41 21 18 0 37 0 1 57 9 10 78 5 9 76 chain 194050 chr7 159345973 + 110349414 110351568 L1PA3long 6157 + 4003 6157 9923 2154 chain 149587 chr7 159345973 + 110367897 110369586 L1PA5 6144 + 4452 6139 12382 705 1 0 719 11 10 253 chain 90420 chr7 159345973 + 110435844 110437035 HERVL-int 5654 + 4460 5654 19605 328 1 0 4 0 1 425 1 3 126 31 31 25 0 1 20 8 8 222 chain 37552 chr7 159345973 + 110457509 110457975 L1P3 4156 + 3665 4131 36369 68 0 1 133 0 2 238 2 0 7 2 1 16 chain 435150 chr7 159345973 + 110472229 110477295 L1PA4 6152 + 10 5077 4664 500 15 16 1675 0 2 117 2 0 4 0 1 141 0 1 696 0 1 7 9 5 153 2 1 680 0 1 11 0 1 1054 chain 13072 chr7 159345973 + 110492652 110492835 L1MA3 4352 + 4152 4326 64981 83 4 0 23 2 0 24 1 0 6 1 0 29 1 0 9 chain 49464 chr7 159345973 + 110533204 110533861 MER50 708 + 0 686 29783 48 11 9 43 0 4 185 3 0 76 1 0 119 1 0 65 0 32 105 chain 40441 chr7 159345973 + 110584548 110584990 L1PA2 6032 + 5590 6032 34353 442 chain 5741 chr7 159345973 + 110648452 110648555 MADE1 96 - 0 96 82172 24 3 4 18 9 1 49 chain 40291 chr7 159345973 + 110730104 110730972 MLT2A2 560 + 0 558 34452 397 365 55 106 chain 5209 chr7 159345973 + 110734653 110734714 MER61E 571 + 0 62 84634 57 0 1 4 chain 3029 chr7 159345973 + 110735475 110735507 MLT1A1-int 1737 + 658 690 99525 32 chain 212620 chr7 159345973 + 110737729 110740671 L1PBa 3878 + 192 3134 9245 45 7 5 172 3 0 5 18 21 67 0 1 16 2 1 141 1 0 231 82 74 267 0 5 41 8 10 100 0 1 52 0 2 171 1 0 309 0 3 113 0 1 590 1 7 9 7 1 61 12 1 81 5 11 173 9 11 49 2 1 14 5 7 72 chain 32856 chr7 159345973 + 110740671 110741260 L1PB1 5432 + 4729 5237 39414 90 0 1 101 79 0 177 1 3 12 2 1 18 14 12 12 2 0 3 2 0 8 10 8 15 0 5 25 2 1 16 chain 510965 chr7 159345973 + 110743472 110749808 L1PA7 6471 + 0 6372 2719 36 23 5 199 0 10 24 26 48 90 9 7 44 1 0 36 17 21 29 0 1 27 3 0 141 0 1 6 1 0 15 1 13 716 10 9 143 0 1 257 1 2 750 4 1 466 1 5 400 1 0 73 0 1 57 0 2 58 0 1 260 0 1 54 0 1 416 0 1 260 5 6 255 1 0 665 0 3 187 0 1 206 1 0 208 1 0 4 2 3 146 chain 3551 chr7 159345973 + 110771464 110771529 MIR 256 + 32 104 94836 12 11 17 10 0 1 32 chain 167071 chr7 159345973 + 110817081 110818941 L1PA4 6152 + 4108 5972 11264 1552 0 1 48 0 3 260 chain 166943 chr7 159345973 + 110824958 110826847 L1PA5 6144 + 4250 6144 11274 96 1 5 1010 0 1 782 chain 3258 chr7 159345973 + 110913434 110913558 L1MA9 1812 + 1302 1407 97384 27 51 33 22 12 11 12 chain 58321 chr7 159345973 + 110935666 110936353 L1PA7 6471 + 4927 5614 26861 30 1 0 27 14 15 615 chain 42492 chr7 159345973 + 110936361 110936876 L1PA7 6471 + 5621 6137 33066 408 8 9 99 chain 13643 chr7 159345973 + 110936877 110937047 L1PA7 6471 + 6139 6304 64103 85 5 0 80 chain 11228 chr7 159345973 + 110937075 110937213 L1PA7 6471 + 6333 6470 68203 133 1 0 4 chain 51011 chr7 159345973 + 111051843 111052746 MER4D 903 + 0 895 29209 27 1 2 19 7 6 32 54 55 85 16 21 180 1 2 74 21 15 23 12 6 5 0 1 81 0 1 4 1 0 6 51 46 23 0 1 110 1 0 5 5 6 59 chain 89269 chr7 159345973 + 111064349 111065433 HERVL-int 5654 + 4567 5654 19809 789 0 3 295 chain 11766 chr7 159345973 + 111179271 111179489 MER30 238 + 0 233 67278 56 4 5 46 4 0 10 32 53 28 3 0 35 chain 122910 chr7 159345973 + 111249624 111251241 L1PA11 4918 + 2882 4504 15037 219 0 6 409 1 3 254 0 3 6 2 0 303 6 5 90 11 12 116 0 2 18 1 0 60 22 20 66 2 0 13 2 1 16 chain 28199 chr7 159345973 + 111270974 111271325 THE1C 375 + 0 352 44564 313 0 1 38 chain 28380 chr7 159345973 + 111277579 111278042 L1PB4 2604 + 2070 2549 44300 27 12 11 16 11 26 123 18 17 91 16 13 91 1 7 57 chain 94359 chr7 159345973 + 111288290 111289429 L1PA7 6471 + 5313 6470 18990 187 0 13 101 0 4 82 0 2 606 1 0 162 chain 47076 chr7 159345973 + 111332915 111333518 HERVL-int 5654 + 5029 5654 30622 32 6 11 156 0 1 75 0 7 93 0 1 36 1 2 133 0 3 27 0 4 44 chain 34228 chr7 159345973 + 111347903 111348296 L1PA5 6144 + 5751 6142 38543 60 2 0 331 chain 62817 chr7 159345973 + 111395863 111396665 L1PA8 5853 + 5075 5853 25677 314 27 1 130 0 1 43 1 0 39 0 5 71 1 0 61 2 1 19 1 0 93 chain 67044 chr7 159345973 + 111398221 111399213 L1PB 1623 + 633 1585 24695 170 17 21 43 5 4 435 5 1 139 1 0 7 2 1 29 2 1 5 3 0 12 7 0 15 1 0 8 52 29 22 2 0 10 chain 33102 chr7 159345973 + 111419386 111419827 MER4A1 472 + 0 472 39434 12 1 10 209 0 21 46 7 8 166 chain 22085 chr7 159345973 + 111423635 111423896 L1PA6 6164 + 2977 3246 53722 187 0 8 74 chain 555881 chr7 159345973 + 111445694 111451725 L1PA2 6032 + 1 6032 366 2714 0 1 4 1 0 1981 0 2 825 2 0 504 chain 118206 chr7 159345973 + 111469568 111470885 L1PA3long 6157 + 4840 6157 15850 842 0 2 214 1 0 110 1 0 149 chain 14330 chr7 159345973 + 111499825 111500000 L1P1 4361 + 1 176 63149 175 chain 531973 chr7 159345973 + 111500001 111505980 L1PA4 6152 + 183 6151 1751 132 2 1 264 1 0 254 17 0 1195 0 1 179 2 5 472 2 1 76 0 1 607 0 1 1929 1 0 383 0 2 5 5 7 453 chain 20162 chr7 159345973 + 111514288 111514523 L1PA5 6144 + 5903 6138 56176 235 chain 27634 chr7 159345973 + 111544067 111544403 L1PA5 6144 + 5804 6141 45413 51 1 0 31 1 2 113 1 2 138 chain 136453 chr7 159345973 + 111575388 111577660 L1MA1 4479 + 1925 4172 13396 13 17 18 75 14 0 52 0 1 94 5 4 412 30 18 7 0 2 30 10 51 17 8 8 29 17 15 33 1 0 66 1 0 61 94 92 99 0 5 31 2 0 17 4 0 76 1 0 12 5 0 43 10 5 79 5 1 62 3 5 60 2 0 197 1 0 24 2 0 16 1 0 71 7 6 14 2 0 13 7 6 82 9 5 97 0 3 26 1 0 20 13 11 27 7 6 9 1 0 6 9 2 13 chain 89682 chr7 159345973 + 111596654 111597705 MER11C 1089 + 0 1073 19731 200 0 1 45 0 9 62 0 4 271 0 1 95 0 4 45 0 1 148 0 1 20 0 1 165 chain 9794 chr7 159345973 + 111603698 111603820 MER39 703 + 581 703 70838 122 chain 161593 chr7 159345973 + 111609315 111611165 SVA_D 2077 + 40 2073 11638 863 1 0 15 5 3 15 0 38 27 1 69 21 1 0 12 0 78 32 0 3 857 chain 3454 chr7 159345973 + 111623249 111623511 LTR37A 408 + 77 387 95608 19 186 234 22 2 0 6 1 3 26 chain 3973 chr7 159345973 + 111642083 111642134 LTR49 580 + 0 50 91617 11 1 0 39 chain 80850 chr7 159345973 + 111644460 111645463 LTR13 1007 + 0 1007 21460 263 0 2 116 4 5 307 4 6 42 1 0 74 2 3 149 10 9 31 chain 2620 chr7 159345973 + 111772442 111772471 L1MB3 1562 + 1523 1552 102878 29 chain 3848 chr7 159345973 + 111838422 111838476 L1ME1 1623 + 1433 1481 92513 12 6 0 36 chain 8855 chr7 159345973 + 111850181 111850290 MER31A 484 + 146 256 72852 43 0 1 66 chain 35028 chr7 159345973 + 111854112 111854531 LTR2 463 + 0 435 38000 255 0 14 50 10 11 38 0 1 66 chain 3448 chr7 159345973 + 111858860 111858900 MLT2B1 522 + 482 522 95675 40 chain 3081 chr7 159345973 + 111859283 111859339 MLT1D 503 + 438 495 98970 28 11 12 17 chain 83797 chr7 159345973 + 111880627 111881792 L1MA2 4263 + 2967 4114 20850 200 0 2 59 12 5 46 0 1 89 3 5 18 0 1 4 1 0 38 0 3 96 0 1 49 8 4 74 1 0 140 3 0 153 1 0 11 3 0 83 2 0 5 9 4 48 1 0 8 chain 3839 chr7 159345973 + 111938689 111938733 MLT1C 463 + 36 80 92571 44 chain 8510 chr7 159345973 + 111939539 111939664 MER85 139 + 4 139 73660 38 0 1 36 14 23 37 chain 42522 chr7 159345973 + 111942396 111942963 LTR10A 586 + 0 574 33052 202 8 9 27 0 1 41 2 3 95 0 1 124 5 4 4 1 0 28 0 5 30 chain 565637 chr7 159345973 + 111963193 111969223 L1HS 6032 + 0 6032 80 918 1 0 121 0 3 4990 chain 2499 chr7 159345973 + 112048105 112048166 L1MEc 1507 + 984 1043 103658 19 18 17 7 1 0 16 chain 91387 chr7 159345973 + 112126574 112127570 L1PA3long 6157 + 5162 6157 19436 234 1 0 761 chain 60935 chr7 159345973 + 112128255 112128927 SVA_D 2077 + 1401 2073 26128 44 1 0 253 0 2 47 0 1 317 2 0 8 chain 27151 chr7 159345973 + 112213011 112213363 THE1B 368 + 0 368 46043 44 0 15 113 4 3 29 1 5 87 2 0 72 chain 60097 chr7 159345973 + 112220649 112221416 LTR17 781 + 2 781 26345 325 1 0 68 20 9 267 0 1 38 5 27 31 0 1 12 chain 33984 chr7 159345973 + 112222723 112223161 MLT2A1 477 + 0 473 38718 169 4 1 12 0 1 21 0 1 180 19 55 33 chain 3122 chr7 159345973 + 112240060 112240096 L1MA3 4352 + 44 80 98618 36 chain 12399 chr7 159345973 + 112240336 112240562 L1MA3 4352 + 4123 4347 66140 37 0 1 14 0 4 27 0 1 28 4 0 23 2 0 24 1 0 6 1 0 14 8 12 14 6 2 17 chain 14542 chr7 159345973 + 112246973 112247186 LTR56 451 + 111 326 62849 22 2 3 99 14 15 76 chain 78887 chr7 159345973 + 112249603 112250662 MER11C 1089 + 0 1073 21902 247 1 10 60 0 4 64 1 0 148 53 50 107 1 5 4 1 0 38 0 1 127 0 1 54 10 9 135 0 1 8 chain 49313 chr7 159345973 + 112316695 112317319 L1PA7 6471 + 5853 6470 29828 283 5 6 139 0 1 119 11 4 60 2 0 5 chain 15869 chr7 159345973 + 112368383 112368601 MLT2A1 477 + 0 217 61202 169 4 1 11 0 1 21 1 2 12 chain 127393 chr7 159345973 + 112417570 112419142 L1PA8 5853 + 4283 5853 14376 302 0 1 423 0 2 48 0 3 279 1 0 223 1 0 45 2 0 70 1 0 10 1 0 51 2 1 19 1 0 93 chain 140657 chr7 159345973 + 112551049 112552600 SVA_D 2077 + 65 2056 13049 81 4 7 735 0 83 65 0 2 11 0 352 655 chain 46742 chr7 159345973 + 112555264 112555863 LTR66 600 + 0 600 30752 161 1 0 39 0 1 202 32 0 37 0 33 127 chain 18456 chr7 159345973 + 112591116 112591344 AluSc 308 + 72 308 58156 129 8 16 91 chain 104900 chr7 159345973 + 112591350 112592857 L1PA10 4194 + 2280 3767 17702 87 0 3 206 4 9 7 5 0 15 33 17 54 4 8 93 0 4 271 1 4 70 1 2 94 3 4 30 1 2 204 1 2 11 3 0 36 6 8 71 0 1 91 31 9 74 chain 32025 chr7 159345973 + 112592911 112593308 MLT2A2 560 + 0 396 40331 183 1 0 213 chain 215511 chr7 159345973 + 112600084 112602636 L1PA7 6471 + 3165 6469 9158 596 0 407 25 0 4 131 3 0 1145 0 5 76 6 348 559 3 0 8 chain 17111 chr7 159345973 + 112671896 112672238 THE1D 372 + 0 330 59679 40 25 7 22 33 34 63 32 34 25 1 0 72 0 4 29 chain 12512 chr7 159345973 + 112711966 112712117 Tigger3c 601 + 371 522 65970 151 chain 29946 chr7 159345973 + 112747336 112747724 MSTA 426 + 0 386 42103 28 0 1 45 4 0 29 1 2 281 chain 3440 chr7 159345973 + 112750164 112750204 Tigger3c 601 + 541 581 95736 40 chain 554324 chr7 159345973 + 112916458 112924203 L1PA3long 6157 + 4 6157 458 522 4 0 100 3 0 238 0 5 707 0 1 2785 0 4 957 1 10 150 1604 0 674 chain 126829 chr7 159345973 + 112921983 112923471 SVA_E 1901 + 0 1879 14434 146 1 0 178 3 0 462 0 39 11 0 2 10 0 75 42 0 1 63 3 0 18 1 282 255 0 1 4 1 0 290 chain 46115 chr7 159345973 + 112976027 112976598 L1PA7 6471 + 5888 6467 31008 211 0 8 360 chain 67591 chr7 159345973 + 112981023 112981798 L1PA5 6144 + 5352 6129 24544 435 15 16 198 0 1 127 chain 3763 chr7 159345973 + 113000220 113000262 Tigger7 736 + 67 109 93121 42 chain 126821 chr7 159345973 + 113017159 113018654 LTR12C 1709 + 0 1709 14437 211 2 0 363 3 0 145 0 118 273 1 0 8 2 0 28 2 1 77 0 4 168 0 102 129 1 0 82 chain 73895 chr7 159345973 + 113090706 113091515 L1PA3long 6157 + 5338 6147 23122 809 chain 5919 chr7 159345973 + 113148714 113148877 L1MA3 4352 + 4202 4352 81396 17 7 5 11 2 0 24 2 0 23 8 6 20 10 9 11 1 0 4 6 3 17 chain 3378 chr7 159345973 + 113154987 113155029 L2a 937 + 734 776 96316 42 chain 10805 chr7 159345973 + 113242544 113242885 MSTA 426 + 29 396 68848 23 10 7 43 0 1 6 0 4 20 30 37 34 130 147 45 chain 67897 chr7 159345973 + 113269763 113270527 L1PA5 6144 + 5381 6144 24474 303 0 2 451 3 0 7 chain 341778 chr7 159345973 + 113332296 113337786 L1PA8A 6298 + 1807 6290 6030 42 4 5 39 0 1 186 9 10 131 0 2 287 1 9 54 0 4 207 0 2 49 2 17 514 1 0 26 2 0 11 9 11 330 6 5 4 0 1 41 0 1 71 2 5 50 0 1 268 0 2 126 0 1 23 0 7 6 10 2 76 1066 0 297 0 2 330 0 3 16 0 1 106 8 16 107 10 11 166 3 1 5 0 4 80 0 1 379 0 1 11 4 3 174 0 1 141 chain 54132 chr7 159345973 + 113346850 113347483 L1PA7 6471 + 5175 5807 28179 445 2 1 186 chain 16984 chr7 159345973 + 113381344 113381557 HSMAR1 1287 + 1 212 59826 123 3 1 87 chain 93588 chr7 159345973 + 113429988 113430992 L1PA2 6032 + 5026 6030 19100 1004 chain 23323 chr7 159345973 + 113491652 113491935 L1PA5 6144 + 5851 6132 51890 27 1 0 7 0 1 6 1 0 103 2 1 136 chain 46115 chr7 159345973 + 113493497 113494068 L1PA7 6471 + 5888 6467 31007 211 0 8 360 chain 73001 chr7 159345973 + 113498560 113499355 L1HS 6032 + 5237 6032 23314 795 chain 49743 chr7 159345973 + 113523691 113524252 L1PA3long 6157 + 5597 6156 29660 418 1 0 137 1 0 4 chain 545724 chr7 159345973 + 113533338 113539680 L1PA2 6032 + 0 6029 987 256 1 0 485 0 1 2307 1 0 878 2 1 1304 322 0 48 0 10 591 1 2 146 chain 29077 chr7 159345973 + 113538585 113538890 AluYa8 305 + 0 305 43224 305 chain 44743 chr7 159345973 + 113567219 113567754 L1PA7 6471 + 5934 6470 31726 372 15 16 148 chain 188920 chr7 159345973 + 113572115 113574287 L1PA5 6144 + 3978 6140 10168 215 3 0 1101 0 2 5 6 2 59 7 0 83 0 2 59 5 5 629 chain 117466 chr7 159345973 + 113593157 113594562 LTR12C 1709 + 0 1709 15979 23 0 19 224 0 1 171 0 1 207 2 282 184 1 0 5 5 3 104 0 4 358 0 2 121 chain 234907 chr7 159345973 + 113600731 113603731 L1PA8 5853 + 2768 5853 8605 33 0 1 107 6 8 19 13 12 7 0 4 167 0 1 86 2 1 138 11 12 543 0 1 198 0 1 86 0 2 408 6 83 326 3 0 503 1 0 49 1 0 45 2 0 31 0 8 30 2 1 8 2 1 44 13 12 16 1 0 93 chain 10722 chr7 159345973 + 113621726 113621872 LTR8 732 + 31 171 69007 8 6 0 132 chain 40473 chr7 159345973 + 113660803 113661242 L1PA2 6032 + 4740 5179 34330 439 chain 79314 chr7 159345973 + 113661242 113662087 L1PA2 6032 + 5180 6025 21777 845 chain 21114 chr7 159345973 + 113669766 113670099 THE1B 368 + 0 356 54994 43 1 16 110 1 0 29 36 46 43 8 7 62 chain 111802 chr7 159345973 + 113670108 113671653 THE1B-int 1605 + 0 1605 16836 136 0 1 289 0 25 78 0 3 13 5 13 232 10 28 224 3 7 84 60 0 7 26 86 310 0 1 68 chain 8247 chr7 159345973 + 113685142 113685239 MER41B 635 + 538 635 74299 97 chain 17876 chr7 159345973 + 113689795 113690186 L1PB 1623 + 1214 1576 58797 87 8 10 55 0 1 37 16 17 25 1 0 7 2 1 30 1 0 3 3 0 14 5 1 10 4 3 10 50 28 23 chain 5733 chr7 159345973 + 113708618 113708690 MER53 195 + 1 73 82213 72 chain 104109 chr7 159345973 + 113740816 113741965 L1PA3long 6157 + 4999 6155 17807 347 0 1 787 0 6 15 chain 10560 chr7 159345973 + 113741987 113742128 THE1D 372 + 226 372 69304 12 2 8 90 2 1 35 chain 536887 chr7 159345973 + 113742905 113748900 L1PA2 6032 + 5 6009 1511 66 1 2 184 1 0 262 11 23 2507 1 0 246 2 0 883 2 1 127 0 1 1556 3 0 5 2 0 5 3 8 128 chain 359896 chr7 159345973 + 113756590 113760643 L1PA4 6152 + 1912 5970 5803 1093 0 1 504 1 0 841 0 4 790 0 1 824 chain 5416 chr7 159345973 + 113826521 113826589 MER67D 511 + 349 418 83621 61 0 1 7 chain 521691 chr7 159345973 + 113855971 113862447 L1PA7 6471 + 0 6465 2199 124 4 0 117 11 12 155 0 4 475 16 16 150 5 6 151 0 4 374 0 2 1043 1 2 60 1 0 194 0 4 497 1 0 4 1 2 279 1 2 257 16 0 65 0 1 34 2 1 171 2 1 54 11 6 23 8 7 4 0 1 360 7 10 817 7 1 122 0 1 4 1 3 72 0 1 615 9 8 142 2 0 7 chain 84343 chr7 159345973 + 113867778 113868707 L1PA4 6152 + 5048 5977 20745 929 chain 23434 chr7 159345973 + 113870923 113871175 L1PA2 6032 + 5778 6030 51703 252 chain 28743 chr7 159345973 + 113886193 113886563 THE1B 368 + 0 368 43718 64 1 0 108 5 4 192 chain 27505 chr7 159345973 + 113928535 113928891 THE1A 353 + 0 353 45573 92 1 0 18 1 0 92 1 0 151 chain 120679 chr7 159345973 + 113928891 113930450 THE1A-int 1579 + 0 1574 15410 36 1 2 34 0 14 408 2 1 155 0 2 295 0 1 4 1 0 161 2 0 107 1 14 7 13 0 296 0 1 36 chain 27287 chr7 159345973 + 113930455 113930810 THE1A 353 + 0 353 45846 111 1 0 91 1 0 151 chain 5038 chr7 159345973 + 113947857 113948018 L1PBb 2709 + 2454 2599 85473 21 84 69 9 1 0 46 chain 528321 chr7 159345973 + 114054942 114061069 L1PA5 6144 + 0 6144 1902 142 1 2 199 0 2 1050 14 14 1168 0 1 664 0 1 4 2 1 1532 0 2 561 0 6 491 1 4 18 0 1 118 8 16 8 7 0 139 chain 27031 chr7 159345973 + 114134449 114134733 AluYa5 310 + 18 302 46224 284 chain 42186 chr7 159345973 + 114155150 114156726 MER4D1 891 + 0 865 33258 41 0 1 7 1 2 10 3 0 55 4 5 23 0 1 72 0 2 163 833 106 30 21 22 58 0 5 52 57 53 54 35 45 18 0 1 39 chain 4454 chr7 159345973 + 114167416 114167468 Tigger1 2417 + 54 106 88588 52 chain 25358 chr7 159345973 + 114169708 114170070 THE1B 368 + 0 368 48688 19 2 0 10 7 13 64 1 2 62 9 8 57 0 2 131 chain 47094 chr7 159345973 + 114207988 114208580 THE1B-int 1605 + 1016 1605 30615 118 3 0 471 chain 27104 chr7 159345973 + 114208584 114208949 THE1B 368 + 4 368 46120 103 3 4 63 1 0 18 4 0 92 0 2 37 0 1 44 chain 7471 chr7 159345973 + 114237564 114237648 MER51A 677 + 528 612 76197 84 chain 19677 chr7 159345973 + 114256749 114257011 L1PA10 4194 + 3889 4150 56814 25 1 2 194 9 7 33 chain 119553 chr7 159345973 + 114453740 114455032 L1PA2 6032 + 4740 6032 15601 1292 chain 62770 chr7 159345973 + 114510644 114511364 L1PA7 6471 + 5748 6467 25690 234 0 1 478 2 0 6 chain 60003 chr7 159345973 + 114515807 114516473 L1PA3long 6157 + 4393 5059 26370 666 chain 24826 chr7 159345973 + 114732214 114732575 THE1B 368 + 0 366 49547 39 0 1 4 6 20 108 1 0 28 2 0 94 20 13 59 chain 108369 chr7 159345973 + 114763203 114764580 L1PA8 5853 + 4481 5853 17269 296 0 6 223 2 0 3 2 0 75 3 4 344 1 0 89 1 0 43 1 0 44 2 0 65 10 9 6 1 0 52 2 1 19 1 0 78 0 1 14 chain 72487 chr7 159345973 + 114816665 114817566 L1PA7 6471 + 5559 6465 23434 55 0 3 522 0 1 106 0 1 38 1 0 22 8 9 149 chain 14698 chr7 159345973 + 114849977 114850341 THE1D 372 + 0 372 62682 26 53 54 20 17 16 44 29 80 7 44 0 25 0 1 99 chain 3125 chr7 159345973 + 114905970 114906006 MLT2A1 477 + 363 399 98582 36 chain 46753 chr7 159345973 + 115084235 115084769 L1PA5 6144 + 5606 6141 30748 389 1 2 144 chain 49929 chr7 159345973 + 115401440 115402026 L1PA7 6471 + 5858 6450 29591 463 1 7 122 chain 9201 chr7 159345973 + 115406373 115406484 UCON28a 235 + 44 155 72121 111 chain 9529 chr7 159345973 + 115417199 115417462 L1MD1 2063 + 1565 1821 71411 80 100 96 32 23 20 28 chain 45988 chr7 159345973 + 115466619 115467172 L1PA7 6471 + 5912 6467 31066 182 0 1 190 1 2 180 chain 21023 chr7 159345973 + 115536460 115536707 L1PA7 6471 + 6208 6455 55089 247 chain 8182 chr7 159345973 + 115537306 115537420 MER85 139 + 14 139 74456 15 4 5 56 0 10 39 chain 30195 chr7 159345973 + 115583656 115584059 LTR2 463 + 0 463 41853 282 33 93 88 chain 380542 chr7 159345973 + 115585674 115591051 L1PB1 5432 + 74 5420 5472 524 0 3 5 0 3 32 3 21 33 0 3 179 3 5 88 2 0 6 17 19 248 3 7 121 0 3 20 1 0 8 2 0 5 26 11 28 0 5 360 1 0 320 0 71 290 5 0 8 0 7 54 0 1 40 32 18 220 14 16 49 65 67 35 3 4 273 12 14 321 1 2 107 1 4 150 8 0 738 1 0 7 2 0 295 1 16 108 0 1 5 1 0 51 2 0 11 94 0 24 1 0 9 19 14 8 2 0 51 2 1 16 1 0 44 2 1 14 1 0 4 21 9 15 11 8 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 442650 chr7 159345973 + 115594361 115599723 L1PA6 6164 + 541 6162 4527 14 0 232 156 0 6 7 5 0 56 0 1 249 8 5 65 0 1 173 2 1 242 4 6 570 4 0 72 0 4 180 1 5 603 0 1 332 1 2 651 4 10 355 0 1 269 2 0 32 0 3 276 0 1 193 5 15 222 1 2 608 chain 34119 chr7 159345973 + 115633918 115634374 L1PA8 5853 + 5395 5853 38620 60 0 2 105 1 0 38 5 10 69 2 1 60 2 1 12 1 0 7 1 0 93 chain 25790 chr7 159345973 + 115711843 115712150 L1PA7 6471 + 6148 6460 48030 51 0 4 183 0 1 73 chain 116160 chr7 159345973 + 115737856 115739132 L1PA3long 6157 + 4881 6156 16196 1127 1 0 148 chain 36788 chr7 159345973 + 115759290 115759691 L1PA2 6032 + 5630 6032 36891 256 0 1 145 chain 294426 chr7 159345973 + 115889811 115893468 L1PA7 6471 + 2781 6464 6999 194 8 11 551 7 11 565 15 16 257 1 0 292 0 2 11 7 9 96 0 1 45 0 3 652 4 1 112 4 7 81 6 8 260 0 1 42 0 2 87 0 1 34 1 0 84 6 10 229 0 2 6 chain 184106 chr7 159345973 + 115928569 115930668 L1PA5 6144 + 4022 6127 10383 1002 4 5 268 0 4 751 1 2 73 chain 191256 chr7 159345973 + 115947830 115949950 L1PA3long 6157 + 3126 5246 10056 1999 1 0 4 0 1 116 chain 512056 chr7 159345973 + 115989279 115995355 L1PA5 6144 + 0 6144 2665 121 0 14 163 1 23 114 70 67 559 0 1 107 9 0 254 0 2 390 7 8 66 0 4 38 0 1 412 0 1 137 0 18 220 5 6 625 0 3 481 2 0 668 0 2 865 4 15 80 1 0 524 0 2 153 chain 78353 chr7 159345973 + 116000000 116001313 L1MA3 4352 + 1762 3087 22014 15 1 2 93 0 5 35 28 30 60 5 4 16 9 12 83 19 21 35 0 3 5 6 19 86 0 1 5 6 5 11 13 12 25 1 0 7 1 0 14 0 4 56 9 0 86 5 0 70 1 0 143 11 0 66 1 2 71 0 12 48 17 18 5 1 0 64 38 34 42 chain 21443 chr7 159345973 + 116004826 116005170 THE1B 368 + 0 368 54590 44 10 25 98 6 5 20 41 51 125 chain 21577 chr7 159345973 + 116006746 116007074 THE1B 368 + 0 353 54394 44 0 15 48 0 1 67 1 0 23 35 45 110 chain 95990 chr7 159345973 + 116045019 116046239 THE1A-int 1579 + 10 1574 18778 161 1 2 5 1 0 209 7 300 49 0 32 310 16 33 95 0 1 187 0 1 179 chain 281808 chr7 159345973 + 116047047 116050389 L1PA5 6144 + 0 3387 7378 121 0 14 18 3 15 644 2 19 24 0 1 274 5 15 21 13 4 876 0 1 266 1 2 204 0 1 638 3 0 229 chain 79140 chr7 159345973 + 116050394 116051292 L1PA5 6144 + 5231 6129 21826 898 chain 13733 chr7 159345973 + 116064545 116064712 L1PA8 5853 + 5688 5853 63970 54 1 0 18 1 0 93 chain 26398 chr7 159345973 + 116090796 116091120 L1PA7 6471 + 6139 6466 47123 128 5 6 40 0 1 137 0 1 14 chain 114699 chr7 159345973 + 116108944 116110227 L1PA5 6144 + 4854 6135 16432 611 1 0 351 6 5 314 chain 4663 chr7 159345973 + 116155957 116156020 MER96B 391 + 278 338 87465 13 3 0 47 chain 14387 chr7 159345973 + 116197748 116197979 MER30 238 + 0 238 63049 98 1 2 9 2 0 11 17 28 51 7 4 35 chain 28708 chr7 159345973 + 116277875 116278340 L1PA15 4387 + 3893 4356 43785 40 1 0 170 2 1 26 1 0 55 1 0 23 0 11 37 29 26 32 27 21 21 chain 545991 chr7 159345973 + 116371251 116377389 L1PA4 6152 + 0 6152 969 145 0 2 1097 2 1 1197 0 1 101 0 2 631 2 0 399 0 1 358 6 5 1360 0 1 263 0 12 571 1 0 5 chain 56774 chr7 159345973 + 116391685 116392388 L1PA8 5853 + 5156 5853 27333 408 1 0 41 5 3 71 1 0 61 2 1 19 2 1 92 chain 543931 chr7 159345973 + 116408860 116414874 L1PA3long 6157 + 0 6156 1091 152 0 1 615 8 136 141 0 1 697 0 2 2209 0 1 338 0 2 59 0 4 832 0 3 963 chain 9815 chr7 159345973 + 116455968 116456073 LTR7 482 + 377 482 70791 105 chain 288675 chr7 159345973 + 116456081 116459542 HERVH-int 3825 + 16 3825 7173 356 0 1 116 2 0 11 24 80 20 5 56 42 2 1 30 1 0 50 1 0 180 0 24 702 4 31 403 29 12 702 3 1 236 9 11 39 8 218 139 1 0 123 0 2 223 chain 25696 chr7 159345973 + 116460742 116461136 LTR7 482 + 0 442 48179 138 21 28 10 25 35 10 1 2 31 2 0 11 0 31 9 0 1 136 chain 127849 chr7 159345973 + 116473239 116476124 L1PB1 5432 + 3510 5423 14304 222 2 0 87 0 4 169 12 11 50 13 22 181 318 4 39 8 6 82 0 1 234 5 10 73 0 2 354 8 8 34 18 9 26 1 0 4 32 26 45 5 9 15 2 1 15 656 16 11 1 0 14 25 14 18 10 7 13 2 0 24 1 0 22 1 0 12 1 0 15 1 0 4 chain 54270 chr7 159345973 + 116475312 116475918 L1PA5 6144 + 5523 6128 28127 308 1 0 297 chain 23769 chr7 159345973 + 116587278 116587638 L1PA8 5853 + 5408 5767 51166 71 13 13 72 1 0 43 3 1 63 2 0 5 0 1 29 0 5 29 2 1 19 1 0 7 chain 6710 chr7 159345973 + 116600237 116600321 MLT2D 439 + 1 85 78610 84 chain 21893 chr7 159345973 + 116608804 116609054 L1PA7 6471 + 6207 6457 53976 250 chain 96314 chr7 159345973 + 116638157 116639351 SVA_A 1864 + 10 1644 18734 5 1 0 10 4 0 476 0 40 75 2 0 36 3 0 37 3 0 113 3 0 32 0 2 39 41 455 105 0 2 103 2 0 104 chain 502578 chr7 159345973 + 116742943 116751477 L1PA7 6471 + 6 6365 3039 270 24 25 90 0 7 5 0 1 267 5 198 692 4 3 26 0 1 520 2100 0 309 0 14 205 0 2 441 0 16 53 320 0 59 39 0 62 14 8 93 0 1 119 0 19 179 0 1 239 2 1 68 2 0 774 0 3 13 0 25 526 1 0 132 0 5 144 0 7 211 1 0 525 chain 182972 chr7 159345973 + 116744865 116746933 L1PA5 6144 + 4068 6139 10441 1224 3 4 733 0 1 37 0 1 71 chain 3229 chr7 159345973 + 116903321 116903355 U2 167 + 0 34 97671 34 chain 13655 chr7 159345973 + 116965364 116965576 L1PA8 5853 + 5649 5853 64076 32 1 0 6 4 3 52 1 0 16 5 4 24 12 8 59 chain 8637 chr7 159345973 + 116984255 116984356 MSTC 436 + 335 436 73379 101 chain 11215 chr7 159345973 + 117058755 117058909 L1MA2 4263 + 3968 4114 68224 90 8 1 46 1 0 9 chain 13025 chr7 159345973 + 117105143 117105317 L1MA4 2864 + 2516 2692 65080 10 0 3 124 0 2 16 3 0 21 chain 53670 chr7 159345973 + 117109282 117110008 L1PB1 5432 + 2532 3279 28340 237 15 34 39 1 0 81 6 10 50 2 1 5 0 1 107 1 0 182 chain 3622 chr7 159345973 + 117118196 117118237 Tigger4a 237 - 191 232 94263 41 chain 3741 chr7 159345973 + 117244017 117244061 L1MB1 2102 + 480 524 93321 44 chain 7128 chr7 159345973 + 117246120 117246232 L1MB1 2102 + 1885 2008 77169 34 1 2 18 9 19 50 chain 6244 chr7 159345973 + 117272151 117272334 MER20 218 + 0 159 80193 14 37 21 4 1 0 38 23 19 12 4 0 38 2 3 10 chain 45126 chr7 159345973 + 117432608 117433245 L1PA11 4918 + 3866 4507 31510 286 1 3 122 1 0 4 0 1 8 20 24 20 0 1 17 1 0 43 1 0 10 14 15 54 1 0 15 1 0 18 chain 254702 chr7 159345973 + 117451146 117455009 L1MA2 4263 + 169 4100 8118 38 7 0 43 2 1 14 0 1 67 1 0 6 0 4 138 0 6 146 1 0 38 0 4 74 56 6 47 28 0 229 9 19 7 10 0 68 0 2 189 5 6 12 0 4 110 0 4 30 0 1 51 11 15 18 0 3 7 12 4 32 1 2 404 9 13 21 10 11 159 24 25 162 1 5 141 0 4 9 7 20 56 2 0 32 7 13 61 10 14 42 0 103 61 1 3 112 0 5 9 14 0 30 16 17 22 0 4 281 1 5 16 6 1 76 1 5 23 6 5 11 0 1 61 26 25 18 2 0 92 18 15 62 0 5 83 19 17 83 7 0 17 1 4 16 3 0 5 chain 98900 chr7 159345973 + 117462663 117463835 L1PA7 6471 + 4487 5673 18424 86 1 0 5 0 1 97 0 4 67 1 0 87 0 2 359 0 4 273 10 16 133 1 0 52 chain 270935 chr7 159345973 + 117525232 117529529 L1HS 6032 + 1748 6032 7688 913 13 0 3371 chain 14863 chr7 159345973 + 117552877 117553215 MLT1A0 366 + 32 350 62441 81 143 122 5 0 1 109 chain 99524 chr7 159345973 + 117595966 117597387 LTR12C 1709 + 0 1709 18350 192 3 4 18 3 5 119 0 6 4 0 37 79 17 9 27 1 2 63 8 1 10 0 7 67 0 119 68 1 0 238 0 47 93 40 13 72 9 20 119 0 101 81 15 14 74 chain 37723 chr7 159345973 + 117609990 117610399 L1PA2 6032 + 5623 6032 36258 409 chain 22749 chr7 159345973 + 117752943 117753243 L1PA11 4918 + 4203 4502 52760 126 2 0 52 0 2 10 2 1 7 0 2 72 2 0 27 chain 22409 chr7 159345973 + 117886396 117886867 L1PB1 5432 + 4989 5426 53258 109 18 16 24 1 0 6 1 0 14 27 21 41 2 1 15 1 0 43 2 1 16 24 12 18 14 11 9 2 0 27 1 0 19 1 0 12 1 0 11 2 1 10 chain 390281 chr7 159345973 + 117919478 117926417 L1PB1 5432 + 19 5419 5315 189 0 10 184 1 0 9 0 1 131 0 1 8 0 1 24 0 1 72 1 0 144 8 0 229 2 11 370 137 16 289 0 1 14 0 1 13 0 28 12 17 0 79 9 0 300 34 31 28 0 8 58 0 1 93 0 4 99 0 1 14 1 0 88 0 3 107 5 6 80 5 6 55 5 4 441 1445 0 52 0 79 317 23 0 472 0 2 17 0 1 403 6 8 279 3 7 112 0 1 69 56 14 21 1 0 9 1 0 10 19 13 50 2 1 15 1 0 41 11 10 9 5 1 11 9 0 19 8 5 14 2 0 24 1 0 13 0 4 4 1 0 13 2 1 14 chain 120222 chr7 159345973 + 117922837 117924250 L1PA4 6152 + 2890 6151 15496 281 1 0 120 0 1 36 0 1 32 6 1854 175 1 0 235 7 7 519 chain 182710 chr7 159345973 + 117966699 117968912 L1PA4 6152 + 3155 5353 10454 99 19 0 1097 0 4 998 chain 57251 chr7 159345973 + 117984676 117985308 L1PA3long 6157 + 5276 5908 27178 632 chain 129861 chr7 159345973 + 117994279 117995859 THE1A-int 1579 + 0 1579 14059 430 1 0 5 4 7 134 1 0 7 0 1 676 3 0 319 chain 27680 chr7 159345973 + 117995859 117996212 THE1A 353 + 0 353 45351 110 1 0 181 0 1 61 chain 399593 chr7 159345973 + 118016895 118022244 L1PB1 5432 + 19 5422 5159 174 0 25 187 2 3 19 9 10 168 0 3 82 3 4 33 0 1 89 0 1 205 2 11 106 0 1 86 0 4 165 0 4 108 4 12 413 2 3 322 30 24 48 1 2 159 1 2 337 6 0 9 6 7 519 0 1 29 0 7 123 2 3 297 0 1 11 9 27 98 0 1 23 1 0 219 5 6 371 0 1 122 0 2 38 1 0 59 1 0 51 0 3 53 0 3 189 1 2 10 5 2 21 1 0 9 1 0 11 5 1 8 2 0 53 2 1 60 1 0 15 3 0 6 16 6 19 31 26 17 1 0 16 6 5 13 1 0 18 chain 58686 chr7 159345973 + 118069896 118070596 L1PA7 6471 + 5764 6466 26764 367 0 1 254 0 1 79 chain 140024 chr7 159345973 + 118102858 118104400 L1PA3long 6157 + 4614 6157 13096 917 0 1 625 chain 24561 chr7 159345973 + 118108733 118109023 L1PA6 6164 + 5867 6157 49920 290 chain 275948 chr7 159345973 + 118116879 118121364 HERVK22-int 3844 + 13 3844 7552 30 3 0 1030 1 0 273 0 1 157 11 12 236 3 27 1268 1 0 71 1 0 6 1 0 20 1 0 36 1 0 18 2 0 33 11 9 7 1 0 39 6 4 16 26 15 10 2 0 7 14 8 10 1 0 5 69 51 19 10 6 12 0 2 12 826 203 77 24 23 78 chain 516853 chr7 159345973 + 118122228 118128365 L1PA6 6164 + 0 6160 2426 252 0 2 259 15 0 7 0 15 694 0 4 1040 0 1 51 16 0 64 5 0 7 0 31 754 3 4 4 0 1 459 0 1 46 1 0 95 0 1 69 0 1 265 0 3 282 0 1 78 1 6 184 0 1 682 0 3 166 1 2 489 1 0 125 11 0 11 chain 126540 chr7 159345973 + 118134593 118136170 THE1B-int 1605 + 0 1605 14474 15 0 2 415 5 30 1102 0 1 40 chain 4404 chr7 159345973 + 118202868 118202922 MER5A1 166 + 111 165 88873 54 chain 17168 chr7 159345973 + 118229965 118230214 L1P4 1494 + 80 326 59606 8 2 0 4 3 0 32 2 1 20 1 0 154 0 4 23 chain 127688 chr7 159345973 + 118338320 118339889 THE1A-int 1579 + 0 1579 14330 117 1 2 158 0 1 130 0 1 298 0 7 865 chain 27404 chr7 159345973 + 118339889 118340243 THE1A 353 + 0 353 45697 110 1 0 92 2 1 9 2 3 138 chain 28534 chr7 159345973 + 118340957 118341312 THE1C 375 + 0 355 44066 103 0 1 246 1 0 5 chain 29470 chr7 159345973 + 118362083 118362528 MLT2A2 560 + 0 560 42640 183 43 49 62 6 0 4 0 115 147 chain 23964 chr7 159345973 + 118383291 118383658 THE1D 372 + 0 372 50850 97 7 8 56 27 33 117 9 8 21 1 0 32 chain 60310 chr7 159345973 + 118392644 118393319 L1PA4 6152 + 4659 5335 26293 216 0 1 459 chain 21258 chr7 159345973 + 118404606 118404926 THE1D 372 + 0 332 54814 58 3 18 7 4 0 18 1 0 64 23 22 9 0 3 133 chain 25989 chr7 159345973 + 118456560 118456921 THE1B 368 + 0 368 47729 55 0 9 108 2 1 47 1 0 16 0 5 6 11 6 115 chain 15053 chr7 159345973 + 118487584 118487916 L1PB1 5432 + 5114 5420 62202 32 1 0 10 17 11 53 3 2 9 2 5 18 0 1 20 7 6 15 14 1 30 3 1 4 1 0 14 2 0 24 1 0 21 6 5 8 1 0 16 chain 11869 chr7 159345973 + 118507401 118507556 L1PA8 5853 + 5702 5850 67073 41 1 0 17 1 0 64 4 0 15 1 0 11 chain 5365 chr7 159345973 + 118528300 118528364 L1PA8A 6298 + 6212 6276 83880 64 chain 10748 chr7 159345973 + 118553383 118553498 L1PA3long 6157 + 4126 4241 68958 115 chain 21763 chr7 159345973 + 118563291 118563632 THE1B 368 + 0 342 54154 15 2 0 25 0 5 18 26 22 85 1 0 22 6 0 47 1 10 93 chain 5173 chr7 159345973 + 118571214 118571311 L1PB1 5432 + 5114 5203 84802 20 1 0 12 1 0 10 9 5 6 2 0 36 chain 28642 chr7 159345973 + 118725245 118725569 L1PA3long 6157 + 5828 6152 43882 324 chain 41058 chr7 159345973 + 118729852 118730301 L1PA2 6032 + 5580 6029 33929 449 chain 4508 chr7 159345973 + 118815528 118815608 MER20 218 + 0 77 88277 17 16 13 47 chain 54411 chr7 159345973 + 118827262 118827933 L1PA7 6471 + 5794 6466 28081 369 0 1 126 2 0 5 5 7 164 chain 36179 chr7 159345973 + 118850983 118851419 L1PA7 6471 + 6012 6450 37288 397 0 2 39 chain 2889 chr7 159345973 + 118851466 118851523 L1MA10 1535 + 1382 1441 100938 8 4 0 11 5 11 29 chain 46229 chr7 159345973 + 118869213 118870133 LTR71B 605 + 0 605 30947 134 22 17 281 1 2 99 311 0 72 chain 29925 chr7 159345973 + 118923252 118923731 MER75 514 + 45 514 42117 60 37 38 214 16 4 112 18 19 22 chain 128034 chr7 159345973 + 118964232 118965616 L1PA2 6032 + 3882 5266 14273 1384 chain 20710 chr7 159345973 + 119119927 119120289 L1PB 1623 + 1190 1529 55481 106 1 0 13 3 1 126 0 1 9 1 0 7 2 1 26 12 8 13 5 1 13 1 0 7 10 0 7 chain 7621 chr7 159345973 + 119122915 119123115 MLT1B 390 + 139 342 75821 32 57 59 32 28 29 51 chain 133366 chr7 159345973 + 119215248 119216731 L1PA3long 6157 + 3495 4984 13705 25 5 10 1323 0 1 130 chain 3357 chr7 159345973 + 119217553 119217592 MLT2A1 477 + 438 477 96525 39 chain 127029 chr7 159345973 + 119316937 119318367 L1PA5 6144 + 3788 5217 14416 514 1 0 915 chain 176310 chr7 159345973 + 119339557 119341705 L1PA6 6164 + 4071 6161 10765 578 1 0 192 5 6 127 41 0 8 23 0 10 0 7 399 1 0 606 6 7 6 1 0 144 chain 17085 chr7 159345973 + 119347879 119348182 L1PREC2 3366 + 1685 1960 59717 141 8 5 42 19 15 26 6 5 16 20 1 4 1 0 20 chain 41278 chr7 159345973 + 119362967 119363431 L1PA3long 6157 + 5690 6157 33803 323 0 3 141 chain 13083 chr7 159345973 + 119373430 119373600 L1PA14 3548 + 1786 1961 64961 25 0 5 145 chain 123395 chr7 159345973 + 119463411 119464838 L1P2 5180 + 1851 3262 14964 466 14 1 5 1 0 854 1 0 12 1 0 73 chain 7081 chr7 159345973 + 119484134 119484261 MLT1C 463 + 58 178 77322 47 1 2 14 10 4 11 1 0 32 1 0 10 chain 9766 chr7 159345973 + 119504318 119504435 L1PA5 6144 + 3800 3918 70896 95 0 1 22 chain 265314 chr7 159345973 + 119567155 119570200 HERV17-int 4347 + 1300 4347 7818 920 1 0 385 0 1 165 0 1 122 1 0 6 0 1 239 0 1 351 1 0 6 0 1 848 chain 26972 chr7 159345973 + 119570512 119570829 LTR17 781 + 0 326 46308 119 0 9 198 chain 551761 chr7 159345973 + 119586709 119592736 L1PA2 6032 + 0 6032 617 228 0 4 25 1 0 1417 0 1 1766 0 1 2129 1 0 204 0 1 256 chain 11197 chr7 159345973 + 119609407 119609558 L1PA8 5853 + 5704 5853 68248 36 2 1 19 1 0 93 chain 34364 chr7 159345973 + 119612116 119612507 L1PA7 6471 + 6073 6465 38452 235 0 1 156 chain 219737 chr7 159345973 + 119648781 119651237 L1PA3long 6157 + 3698 6157 9049 39 0 1 208 0 1 1036 0 1 1173 chain 41772 chr7 159345973 + 119657767 119658215 L1HS 6032 + 4524 4972 33508 448 chain 47973 chr7 159345973 + 119727507 119728132 PRIMA4_LTR 623 + 2 623 30307 23 1 0 234 3 4 47 6 5 77 3 0 231 chain 36455 chr7 159345973 + 119736157 119736596 L1PA7 6471 + 6025 6465 37100 111 0 1 328 chain 5803 chr7 159345973 + 119828502 119828574 MLT1B 390 + 276 348 81905 72 chain 465857 chr7 159345973 + 119854820 119860149 L1PA4 6152 + 12 5348 3967 145 15 16 355 4 0 85 0 1 622 0 1 1024 2 1 49 1 6 69 0 4 793 1 0 1451 0 1 713 chain 136388 chr7 159345973 + 119866261 119867782 L1PA3long 6157 + 4629 6157 13405 1378 1 8 142 chain 92775 chr7 159345973 + 119881760 119882820 L1PA5 6144 + 5079 6140 19221 104 1 0 620 0 1 279 0 1 56 chain 18705 chr7 159345973 + 119914041 119914260 L1P3 4156 + 2669 2888 57892 219 chain 32051 chr7 159345973 + 119914272 119914651 L1PA7 6471 + 6088 6467 40307 379 chain 23185 chr7 159345973 + 119927269 119927606 THE1B 368 + 8 368 52101 36 0 15 113 1 0 25 37 46 125 chain 9835 chr7 159345973 + 119929256 119929388 THE1B 368 + 2 151 70751 19 0 2 16 5 20 92 chain 9825 chr7 159345973 + 119929406 119929571 THE1B 368 + 168 342 70775 28 0 1 4 34 42 99 chain 19618 chr7 159345973 + 119963283 119963498 L1PA5 6144 + 5923 6138 56889 215 chain 32825 chr7 159345973 + 120009178 120009617 LTR7 482 + 0 470 39648 48 1 0 53 15 14 110 5 36 46 0 2 161 chain 271404 chr7 159345973 + 120009631 120013123 HERVH-int 3825 + 0 3823 7676 333 2 1 33 83 401 13 2 0 6 3 8 338 15 21 83 13 7 187 9 0 27 0 2 10 1 0 183 0 4 165 9 7 87 5 6 64 0 1 13 0 4 85 0 5 272 0 1 396 0 1 309 13 16 45 5 1 273 36 37 103 0 2 38 0 2 233 chain 30243 chr7 159345973 + 120014391 120014835 LTR7 482 + 0 482 41811 100 7 64 16 51 0 50 0 31 44 0 1 176 chain 23633 chr7 159345973 + 120041518 120041830 THE1A 353 + 42 353 51380 42 0 1 4 1 0 13 9 8 243 chain 123360 chr7 159345973 + 120041830 120043400 THE1A-int 1579 + 0 1579 14972 163 19 9 656 0 1 298 0 18 434 chain 57620 chr7 159345973 + 120047087 120047861 LTR17 781 + 0 771 27076 244 14 15 24 4 0 43 5 4 38 7 8 319 1 23 20 22 0 33 chain 15199 chr7 159345973 + 120085094 120085279 L1PA7 6471 + 6284 6470 62044 172 1 2 12 chain 74767 chr7 159345973 + 120109696 120110763 MER11A 1151 + 1 1150 22899 78 0 8 135 7 6 59 7 18 119 5 6 118 2 1 5 0 1 127 6 9 11 3 4 22 6 4 11 0 4 69 4 31 16 0 32 99 5 4 87 1 0 65 chain 102281 chr7 159345973 + 120116150 120117364 L1PA6 6164 + 4951 6162 18039 285 0 1 594 0 1 324 5 0 6 chain 29191 chr7 159345973 + 120124506 120124940 MER4A1 472 + 0 458 43062 133 1 0 51 0 4 16 50 71 183 chain 57090 chr7 159345973 + 120154808 120155519 L1PA8A 6298 + 5580 6291 27238 153 0 1 298 1 0 122 0 1 26 8 7 103 chain 41996 chr7 159345973 + 120167572 120168076 MER9a1 513 + 0 504 33358 233 3 0 7 1 4 260 chain 24413 chr7 159345973 + 120195447 120195828 MSTA 426 + 0 424 50146 112 0 25 67 50 48 44 1 21 107 chain 364090 chr7 159345973 + 120207355 120212214 L1PA8A 6298 + 1712 6289 5750 68 0 27 637 0 2 50 0 19 25 0 1 905 0 2 5 2 0 85 12 8 52 15 20 23 0 1 200 0 1 228 0 1 37 12 13 410 4 7 285 0 1 64 27 1 599 2 1 110 0 4 68 314 0 40 2 3 4 1 0 499 4 1 70 chain 4475 chr7 159345973 + 120268618 120268681 Tigger3d 321 + 14 78 88469 35 1 2 27 chain 21532 chr7 159345973 + 120448559 120448824 L1P1 4361 + 3620 3882 54463 55 4 1 206 chain 3216 chr7 159345973 + 120614807 120614844 Charlie16a 284 + 145 182 97752 37 chain 29287 chr7 159345973 + 120617331 120617885 L1PA15 4387 + 3857 4366 42914 33 4 2 15 1 0 26 1 0 66 0 2 98 5 0 5 1 0 26 1 0 52 16 15 8 4 0 12 17 16 21 19 16 44 10 6 8 22 0 28 1 0 10 chain 21139 chr7 159345973 + 120755051 120755358 Tigger3a 397 + 0 366 54961 75 15 64 20 1 11 196 chain 32849 chr7 159345973 + 120811126 120812040 L1PB1 5432 + 4847 5422 39629 220 0 2 29 318 9 7 3 0 24 1 0 20 5 1 9 14 12 33 13 12 12 1 0 16 6 7 20 1 0 21 19 7 18 3 1 5 1 0 14 2 0 24 1 0 22 14 12 18 chain 510230 chr7 159345973 + 120900751 120906856 L1PA6 6164 + 0 6161 2757 145 15 16 34 0 1 79 0 2 190 1 0 201 0 10 4 0 1 224 0 27 382 16 24 407 0 1 50 3 4 165 3 0 245 0 2 120 1 0 171 0 1 462 11 8 201 9 14 109 2 1 967 1 0 101 1 5 98 0 1 83 0 3 142 1 0 476 0 1 181 2 0 27 1 2 438 0 1 48 0 1 177 8 7 94 2 0 7 chain 14204 chr7 159345973 + 121005475 121005655 L1PA7 6471 + 6282 6466 63315 41 0 1 41 4 7 94 chain 117522 chr7 159345973 + 121059788 121061189 LTR12C 1709 + 0 1709 15971 300 0 1 100 0 34 173 1 0 42 0 278 140 0 2 42 1 0 4 4 2 95 15 5 6 0 4 397 1 0 53 0 4 27 chain 7410 chr7 159345973 + 121175364 121175469 L1PREC2 3366 + 1977 2083 76370 21 1 2 83 chain 18778 chr7 159345973 + 121218632 121218863 L1PA7 6471 + 6236 6465 57807 223 2 0 6 chain 29307 chr7 159345973 + 121241061 121241376 AluYa5 310 + 0 310 42879 126 5 0 184 chain 311592 chr7 159345973 + 121249719 121253198 L1PA4 6152 + 2385 5877 6581 867 0 4 268 0 1 135 2 4 694 0 2 68 0 1 599 6 3 267 0 4 193 0 2 380 chain 40416 chr7 159345973 + 121315379 121315819 LTR7Y 441 + 0 441 34372 334 0 1 106 chain 293028 chr7 159345973 + 121315819 121319594 HERVH-int 3825 + 0 3825 7041 532 354 0 38 2 1 9 1 0 14 0 150 35 1 0 507 0 1 4 7 6 388 4 31 141 4 0 154 0 10 575 0 14 510 4 214 491 chain 3251 chr7 159345973 + 121316500 121316536 HERVH-int 3825 + 477 513 97476 36 chain 5048 chr7 159345973 + 121316581 121316637 HERVH-int 3825 + 476 532 85428 56 chain 39966 chr7 159345973 + 121320854 121321293 LTR7Y 441 + 0 441 34683 92 0 1 241 0 1 106 chain 54284 chr7 159345973 + 121321293 121321966 L1PA7 6471 + 5758 6422 28124 150 1 0 94 4 0 131 1 0 130 0 1 34 1 0 4 17 14 106 chain 4754 chr7 159345973 + 121382641 121382704 Tigger4a 237 - 139 200 86942 27 2 0 34 chain 20670 chr7 159345973 + 121390295 121390574 LTR8 732 + 11 309 55538 4 0 1 14 4 13 78 1 4 32 0 6 146 chain 25847 chr7 159345973 + 121405212 121405511 AluSc5 308 + 1 300 47943 299 chain 125257 chr7 159345973 + 121421527 121423132 LTR12C 1709 + 0 1709 14660 183 21 0 116 1 2 163 4 6 249 0 118 274 1 0 6 3 1 74 0 16 16 11 4 330 1 0 67 1 0 84 chain 180262 chr7 159345973 + 121438749 121440798 L1PA5 6144 + 4080 6142 10577 79 1 2 183 0 4 943 0 4 154 0 1 33 0 3 656 chain 11409 chr7 159345973 + 121451343 121451486 Tigger3a 397 + 183 326 67900 143 chain 4172 chr7 159345973 + 121470487 121470534 MER31B 477 + 421 468 90316 47 chain 13857 chr7 159345973 + 121501681 121501922 LTR39 781 + 2 260 63787 13 0 2 5 5 22 130 27 32 45 7 0 9 chain 58028 chr7 159345973 + 121586663 121587317 L1PA4 6152 + 4622 5276 26957 654 chain 26066 chr7 159345973 + 121608204 121608576 THE1D 372 + 5 372 47636 35 12 0 128 18 26 146 1 0 32 chain 85682 chr7 159345973 + 121616527 121617568 MER11C 1089 + 27 1079 20507 223 6 7 165 7 17 128 12 11 14 0 1 486 chain 39775 chr7 159345973 + 121793833 121794335 HERVL-int 5654 + 4554 5654 34840 49 2 573 42 1 0 110 0 2 94 1 0 48 0 23 107 0 4 48 chain 48893 chr7 159345973 + 121808300 121808830 L1PA3long 6157 + 5627 6157 29985 530 chain 17357 chr7 159345973 + 122092529 122092736 AluSp 311 + 87 294 59407 207 chain 21434 chr7 159345973 + 122106298 122106723 L1PREC2 3366 + 2615 3000 54600 99 1 0 32 7 6 27 2 1 26 1 0 43 8 4 14 30 22 16 6 1 16 2 0 29 37 20 29 chain 51897 chr7 159345973 + 122134680 122135282 L1PA5 6144 + 5539 6144 28912 92 0 1 498 1 3 11 chain 4719 chr7 159345973 + 122148609 122148811 MER6B 211 - 3 192 87142 15 0 3 5 7 4 29 111 98 35 chain 214471 chr7 159345973 + 122172424 122175360 HERV17-int 4347 + 11 4341 9191 16 1 0 50 2 1 34 2 0 26 2 1 138 1 0 89 321 5 20 1 0 87 0 1 135 0 17 17 0 1 218 3 23 178 0 1 284 1 0 120 1 2 223 0 2 360 0 1672 96 0 2 48 0 1 462 chain 97587 chr7 159345973 + 122185516 122187013 L1MA2 4263 + 2598 4115 18574 42 9 8 49 5 0 177 17 18 10 0 2 7 2 0 280 55 54 163 3 16 99 0 14 47 14 11 65 5 17 117 10 7 155 2 1 9 1 0 51 0 1 40 7 0 17 7 9 21 1 0 10 chain 4604 chr7 159345973 + 122196405 122196461 MLT2C1 407 + 332 388 87782 56 chain 39827 chr7 159345973 + 122209105 122209835 L1MA1 4479 + 3494 4190 34796 25 2 0 5 0 1 6 1 0 76 0 1 18 11 16 72 1 0 25 3 0 16 1 0 61 35 33 10 1 0 5 0 1 77 33 29 59 1 0 44 17 4 29 2 0 35 1 0 9 25 16 4 1 0 19 chain 551335 chr7 159345973 + 122238520 122244551 L1PA2 6032 + 0 6030 650 257 1 0 5519 1 0 241 0 1 12 chain 5176 chr7 159345973 + 122389839 122389896 L1PA8 5853 + 5796 5853 84790 57 chain 30072 chr7 159345973 + 122473049 122473441 MER57B1 401 + 2 401 41988 340 5 12 47 chain 9897 chr7 159345973 + 122473457 122473585 Tigger4a 237 + 109 237 70622 128 chain 6057 chr7 159345973 + 122562153 122562302 MLT1D 503 + 23 173 80879 45 3 0 15 54 58 32 chain 11667 chr7 159345973 + 122564229 122564710 L1PB4 2604 + 2115 2284 67451 60 316 0 59 3 7 43 chain 195067 chr7 159345973 + 122568890 122571043 L1PA3long 6157 + 4004 6157 9887 2153 chain 141732 chr7 159345973 + 122591039 122592628 L1PA5 6144 + 4185 5774 12957 1589 chain 3578 chr7 159345973 + 122611465 122611516 MADE1 96 + 46 96 94600 7 1 0 43 chain 81544 chr7 159345973 + 122657933 122658890 L1PA5 6144 + 5177 6140 21328 436 0 1 69 0 1 57 0 4 46 1 0 180 25 27 5 1 0 137 chain 48690 chr7 159345973 + 122680737 122681283 L1PA3long 6157 + 5605 6152 30054 409 0 1 137 chain 73408 chr7 159345973 + 122709243 122710051 L1PA3long 6157 + 5333 6149 23233 754 0 8 54 chain 119094 chr7 159345973 + 122721208 122722553 L1PA4 6152 + 3156 4500 15679 135 0 1 397 2 0 811 chain 35276 chr7 159345973 + 122760579 122760973 L1PA4 6152 + 5758 6152 37843 394 chain 19964 chr7 159345973 + 122776455 122776828 THE1B-int 1605 + 2 293 56447 82 0 2 24 91 0 127 11 12 24 1 7 13 chain 137832 chr7 159345973 + 122794492 122796572 L1PA13 3608 + 1241 3548 13277 58 8 12 172 0 6 19 30 20 88 8 9 278 4 2 49 4 13 21 1 6 178 4 5 39 22 265 114 0 2 126 0 3 317 4 3 86 1 0 22 6 5 37 0 2 76 2 0 32 0 1 15 0 1 12 1 0 21 1 0 34 8 1 5 2 0 48 2 0 4 2 0 20 1 0 20 28 20 10 14 7 10 4 1 12 chain 39590 chr7 159345973 + 122816728 122817176 LTR7 482 + 0 482 34963 264 0 31 10 0 3 174 chain 291976 chr7 159345973 + 122817178 122821289 HERVH-int 3825 + 0 3825 7075 186 3 0 26 0 11 308 5 0 39 1 0 9 2 1 9 1 0 7 100 8 14 1 0 9 7 4 26 2 1 31 62 0 25 21 0 15 2 1 49 1 0 450 15 0 456 4 31 410 2 1 370 2 4 130 1 0 489 390 274 431 chain 2501 chr7 159345973 + 122817975 122818001 HERVH-int 3825 + 699 725 103650 26 chain 39773 chr7 159345973 + 122822550 122822998 LTR7 482 + 0 482 34841 239 0 31 35 0 3 174 chain 539157 chr7 159345973 + 122834316 122840441 L1PA5 6144 + 3 6144 1392 53 0 7 509 0 1 835 1 6 889 0 2 1768 0 1 104 0 1 1625 0 1 327 3 1 11 chain 60885 chr7 159345973 + 122874247 122874948 L1PA7 6471 + 4673 5376 26140 310 0 2 391 chain 9557 chr7 159345973 + 122909336 122909452 THE1B 368 + 252 368 71359 116 chain 28972 chr7 159345973 + 122911793 122912197 MLT2A1 477 + 0 393 43373 117 6 1 22 0 1 28 1 5 150 1 0 61 10 0 8 chain 17593 chr7 159345973 + 122967567 122967768 L1PA6 6164 + 5953 6154 59132 201 chain 82222 chr7 159345973 + 122976887 122977812 L1PA5 6144 + 4864 5789 21197 925 chain 3170 chr7 159345973 + 122977813 122977849 L1PA5 6144 + 5789 5825 98201 36 chain 47216 chr7 159345973 + 123086844 123087430 L1PA7 6471 + 5884 6469 30566 183 0 1 196 8 10 41 2 1 143 3 0 10 chain 17986 chr7 159345973 + 123088966 123089335 THE1D 372 + 0 323 58672 13 1 3 21 19 10 108 95 56 112 chain 5748 chr7 159345973 + 123116308 123116470 MER58A 224 + 47 216 82138 32 40 44 44 27 30 19 chain 12211 chr7 159345973 + 123164677 123164846 L1PREC2 3366 + 1065 1240 66459 10 0 2 76 1 0 21 5 10 56 chain 32726 chr7 159345973 + 123166861 123167222 L1PA4 6152 + 5308 5669 39733 361 chain 17973 chr7 159345973 + 123188028 123188354 THE1C 375 + 16 354 58682 31 38 39 100 7 8 33 8 10 41 8 16 60 chain 21346 chr7 159345973 + 123215183 123215497 THE1B 368 + 0 345 54707 41 0 15 136 4 0 7 35 51 40 0 4 51 chain 63604 chr7 159345973 + 123227313 123228281 MER11C 1089 + 0 1063 25502 98 1 0 144 8 17 51 4 8 68 2 1 146 71 69 22 6 7 59 0 10 37 0 1 127 0 1 13 16 74 45 0 15 50 chain 9085 chr7 159345973 + 123304292 123304447 L1MA3 4352 + 4134 4286 72369 34 1 3 65 26 22 24 1 0 4 chain 18143 chr7 159345973 + 123349618 123349821 L1PA7 6471 + 6243 6447 58519 180 0 1 23 chain 110654 chr7 159345973 + 123382625 123384211 THE1C-int 1605 + 23 1605 16990 87 0 54 276 90 16 223 1 0 67 6 15 385 23 24 127 0 3 8 7 0 7 23 33 45 0 1 211 chain 179449 chr7 159345973 + 123428019 123430006 L1PA3long 6157 + 3000 4987 10615 177 1 0 1054 0 1 755 chain 147230 chr7 159345973 + 123476861 123478578 L1PA6 6164 + 4427 6162 12531 216 1 0 342 2 0 481 0 1 73 0 1 228 0 12 74 0 6 152 5 6 143 chain 43937 chr7 159345973 + 123499752 123500312 MER41A 554 + 0 554 32172 87 5 6 298 17 10 153 chain 17146 chr7 159345973 + 123530229 123530457 AluSc 308 + 74 304 59637 48 0 1 8 1 0 142 0 4 17 2 0 10 chain 38096 chr7 159345973 + 123552204 123552647 L1PA7 6471 + 6025 6470 35992 44 1 4 385 1 0 12 chain 3640 chr7 159345973 + 123584397 123584438 MER5B 177 + 112 153 94099 41 chain 27113 chr7 159345973 + 123605236 123605704 L1PA15 4387 + 3909 4356 46107 23 1 0 44 2 0 128 1 0 27 1 0 54 4 3 19 31 26 27 13 10 44 3 1 12 11 6 23 chain 28195 chr7 159345973 + 123699894 123700205 AluYg6 310 + 0 310 44572 131 1 0 179 chain 4904 chr7 159345973 + 123771709 123771768 MLT2B1 522 + 56 115 86136 59 chain 75982 chr7 159345973 + 123780636 123781604 LTR5_Hs 974 + 0 974 22583 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 24066 chr7 159345973 + 123795404 123795769 THE1C 375 + 0 375 50703 107 15 18 17 7 11 50 11 14 76 0 1 55 1 0 26 chain 3497 chr7 159345973 + 123888648 123888731 LTR49 580 + 476 564 95265 5 1 0 22 1 6 14 17 18 23 chain 13770 chr7 159345973 + 123893801 123894140 THE1D 372 + 0 333 63923 53 45 37 30 3 9 5 2 0 5 3 0 27 72 73 94 chain 550118 chr7 159345973 + 123894498 123900645 L1PA3long 6157 + 0 6157 738 838 5 4 348 0 3 388 0 3 1081 0 4 3448 0 1 39 chain 31391 chr7 159345973 + 123992253 123992702 MER4A1 472 + 0 472 40820 175 1 0 41 10 31 144 14 16 21 1 2 42 chain 3834 chr7 159345973 + 124013082 124013128 LTR44 473 + 427 473 92604 46 chain 23297 chr7 159345973 + 124013973 124014338 THE1D 372 + 3 372 51935 101 2 0 7 3 4 20 0 4 14 38 41 146 1 0 7 1 0 25 chain 49472 chr7 159345973 + 124064465 124065368 LTR12_ 688 + 0 688 29777 166 0 1 79 9 6 7 0 3 112 12 11 15 12 16 86 0 1 82 220 0 103 chain 3457 chr7 159345973 + 124074492 124074548 L1MA4 2864 + 2747 2801 95566 18 3 1 35 chain 19354 chr7 159345973 + 124082902 124083217 MER1B 344 + 36 339 57175 67 10 0 30 0 2 81 4 0 35 1 0 6 31 32 50 chain 22592 chr7 159345973 + 124085975 124086341 THE1A 353 + 0 353 52999 79 19 11 17 19 18 74 20 16 138 chain 82004 chr7 159345973 + 124102886 124103917 MER11C 1089 + 0 1054 21241 227 0 5 32 0 3 323 8 9 175 0 8 82 0 5 20 0 1 164 chain 11837 chr7 159345973 + 124121764 124121925 Tigger3c 601 + 366 528 67137 89 3 4 69 chain 31518 chr7 159345973 + 124135130 124135466 L1PA2 6032 + 5695 6031 40723 336 chain 7311 chr7 159345973 + 124157288 124157381 MLT1B 390 + 280 373 76629 93 chain 44465 chr7 159345973 + 124211149 124211876 L1PB1 5432 + 4732 5404 31848 69 5 1 63 1 3 232 0 6 11 30 1 20 2 1 7 1 0 10 2 0 3 2 0 8 2 0 53 2 1 16 1 0 42 1 0 18 0 9 5 21 0 16 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 chain 10636 chr7 159345973 + 124321937 124322252 L1MA4 2864 + 2506 2802 69154 8 1 0 100 170 152 36 chain 24751 chr7 159345973 + 124385396 124385712 THE1A 353 + 22 343 49657 62 0 1 25 1 0 148 0 2 33 0 3 47 chain 116183 chr7 159345973 + 124473496 124474788 L1PA4 6152 + 4791 6084 16190 509 0 1 783 chain 37552 chr7 159345973 + 124492727 124493181 L1PA7 6471 + 6013 6467 36370 454 chain 29738 chr7 159345973 + 124517418 124518424 THE1D-int 1627 + 0 404 42322 10 0 2 118 607 2 83 0 1 188 chain 20685 chr7 159345973 + 124517597 124517843 L1PA5 6144 + 5894 6139 55517 102 1 0 143 chain 24099 chr7 159345973 + 124595285 124595570 AluSp 311 + 0 302 50646 17 0 17 268 chain 3339 chr7 159345973 + 124607010 124607052 MER3 215 - 0 42 96690 42 chain 380709 chr7 159345973 + 124615082 124620015 HERVL-int 5654 + 0 5031 5468 113 1 0 252 10 11 203 22 40 35 0 1 448 9 8 7 0 1 296 9 10 70 0 2 92 0 6 129 0 2 37 0 7 559 8 9 302 0 3 14 26 7 621 19 4 95 8 0 113 1 0 6 1 11 577 1 81 170 2 3 260 0 1 117 0 1 105 5 8 24 7 11 159 chain 34552 chr7 159345973 + 124620048 124620689 L1PB1 5432 + 4862 5430 38316 9 0 1 210 0 3 18 45 3 8 3 0 24 39 31 50 1 0 18 1 0 6 0 1 36 1 0 16 4 1 11 9 0 16 11 8 14 2 0 24 1 0 23 1 0 11 1 0 18 1 0 4 1 0 4 chain 20226 chr7 159345973 + 124632892 124633248 THE1B 368 + 1 368 56104 101 23 24 46 1 0 26 1 0 4 30 41 33 11 12 80 chain 6106 chr7 159345973 + 124665889 124665960 MER41A 554 + 399 470 80708 71 chain 21948 chr7 159345973 + 124729156 124729555 LTR7 482 + 0 482 53905 22 76 64 15 15 14 17 2 53 26 0 11 11 0 31 41 0 3 174 chain 278950 chr7 159345973 + 124729557 124733065 HERVH-int 3825 + 0 3825 7455 45 0 1 273 15 14 97 0 14 53 11 153 6 1 0 29 2 0 12 1 0 13 66 1 68 1 0 213 0 1 140 0 1 95 16 1 200 9 0 40 1 0 215 4 31 36 0 1 247 0 4 20 0 3 274 0 1 24 0 1 563 0 1 179 9 11 39 8 218 260 0 2 85 0 2 138 chain 30757 chr7 159345973 + 124734325 124734734 LTR7 482 + 1 482 41342 68 8 46 109 0 1 5 0 31 104 1 2 79 0 1 35 chain 33322 chr7 159345973 + 124789657 124790082 MER57A1 433 + 0 433 39241 105 0 5 12 0 1 83 0 1 75 0 1 150 chain 105372 chr7 159345973 + 124833952 124835242 L1PA7 6471 + 5151 6459 17631 81 0 3 45 0 3 268 0 4 47 8 15 513 0 1 305 0 1 15 1 0 7 chain 505641 chr7 159345973 + 124900533 124906650 L1PA5 6144 + 1 6144 2942 134 10 24 793 25 0 219 22 13 78 1 6 569 0 1 466 0 1 411 0 2 158 1 0 380 0 7 142 0 2 357 0 21 453 1 0 111 0 4 170 2 1 100 0 14 384 5 0 272 1 0 309 2 1 522 1 0 18 chain 16382 chr7 159345973 + 124941132 124941343 THE1C-int 1605 + 195 425 60541 92 1 12 21 0 2 5 0 6 92 chain 109441 chr7 159345973 + 124957481 124959027 THE1B-int 1605 + 35 1594 17123 270 0 1 124 38 21 257 33 50 71 53 58 155 3 0 242 14 22 102 1 5 119 1 0 57 1 0 5 chain 6668 chr7 159345973 + 124959256 124959351 THE1B 368 + 234 327 78739 6 1 0 63 2 0 7 1 2 15 chain 77910 chr7 159345973 + 124977868 124978812 L1PA6 6164 + 1793 2723 22119 217 1 0 4 0 1 171 0 2 130 23 7 398 chain 12844 chr7 159345973 + 124979025 124979178 L1P2 5180 + 2886 3040 65366 144 0 1 9 chain 123604 chr7 159345973 + 124994876 124996405 L1PA7 6471 + 4876 6413 14917 574 1 0 130 0 1 42 0 6 152 8 9 46 7 8 308 0 2 154 7 0 8 1 6 91 chain 58440 chr7 159345973 + 125022615 125023382 THE1B-int 1605 + 797 1587 26826 215 7 9 126 21 42 398 chain 31335 chr7 159345973 + 125040510 125040875 L1PA7 6471 + 6095 6461 40857 225 1 2 139 chain 30165 chr7 159345973 + 125042294 125042683 L1PA8 5853 + 5468 5853 41877 8 0 3 85 1 0 44 2 0 70 12 10 52 2 1 19 1 0 93 chain 338530 chr7 159345973 + 125046014 125050100 L1P3 4156 + 0 4105 6099 135 0 11 105 1 0 69 1 0 524 1 0 69 0 1 200 0 1 41 0 6 40 1 0 1392 8 4 39 1 2 52 2 1 833 0 1 13 0 5 64 0 1 284 0 1 211 chain 11366 chr7 159345973 + 125097829 125097988 L1PA8 5853 + 5695 5853 67976 34 12 12 19 1 0 93 chain 58429 chr7 159345973 + 125103648 125104379 L1PA8 5853 + 5128 5853 26833 139 0 1 296 1 0 46 2 0 65 5 4 9 2 1 51 2 1 19 1 0 93 chain 38405 chr7 159345973 + 125106272 125106700 L1PA5 6144 + 5684 6112 35783 428 chain 21354 chr7 159345973 + 125208927 125209272 THE1B 368 + 0 368 54697 44 13 28 97 1 0 28 43 53 56 1 0 62 chain 32838 chr7 159345973 + 125258827 125259314 LTR7 482 + 0 470 39636 130 51 0 89 1 0 4 5 38 158 14 16 35 chain 22783 chr7 159345973 + 125267089 125267434 THE1C 375 + 16 363 52696 113 23 24 23 5 6 134 1 2 32 1 0 13 chain 53948 chr7 159345973 + 125274759 125275448 LTR12 884 + 0 884 28249 23 2 1 31 0 41 120 0 1 97 0 24 39 2 0 139 1 0 195 1 134 39 chain 11131 chr7 159345973 + 125276830 125276962 THE1B-int 1605 + 1473 1605 68361 132 chain 60298 chr7 159345973 + 125314840 125315673 LTR12 884 + 0 884 26296 222 0 154 90 0 1 94 103 0 148 1 0 175 chain 212457 chr7 159345973 + 125331666 125334193 L1PA6 6164 + 3600 6158 9255 23 0 9 268 0 19 127 1 0 195 0 2 604 0 5 1137 11 5 9 1 4 151 chain 28571 chr7 159345973 + 125342403 125342715 AluYk4 311 + 0 311 43998 134 1 0 177 chain 21306 chr7 159345973 + 125352552 125352944 L1PA16 3655 + 3147 3540 54757 55 26 25 63 2 0 74 2 0 4 0 1 14 46 49 75 4 6 27 chain 140960 chr7 159345973 + 125415289 125416867 L1PA4 6152 + 4561 6143 13029 737 0 4 841 chain 330896 chr7 159345973 + 125418846 125423495 L1PB1 5432 + 791 5401 6200 5 0 1 350 72 73 33 2 0 156 2 1 127 0 4 625 0 1 60 0 1 267 5 0 8 0 2 35 2 1 69 4 9 6 5 0 215 1 2 152 0 1 9 22 15 120 0 1 106 7 3 107 0 1 371 2 4 307 0 9 315 17 0 97 0 1 14 7 11 142 10 11 44 1 0 101 0 1 18 36 33 267 16 14 17 1 0 13 1 0 11 4 0 9 2 0 53 2 1 10 6 5 44 1 0 16 1 0 6 16 6 14 0 1 4 7 4 15 2 0 19 6 5 21 1 0 10 chain 10626 chr7 159345973 + 125507375 125507495 L1PA6 6164 + 6042 6162 69177 120 chain 4754 chr7 159345973 + 125544884 125544942 ERVL-int 1947 + 1397 1455 86941 58 chain 51303 chr7 159345973 + 125584943 125585524 L1PA4 6152 + 5571 6151 29128 122 1 0 458 chain 112554 chr7 159345973 + 125710157 125711417 L1PA5 6144 + 4885 6144 16737 1104 1 0 155 chain 18628 chr7 159345973 + 125828524 125828767 THE1B-int 1605 + 1359 1598 57968 177 5 1 61 chain 22908 chr7 159345973 + 125828774 125829150 THE1B 368 + 0 368 52502 15 2 0 32 0 1 60 14 15 43 34 27 94 7 6 75 chain 26433 chr7 159345973 + 125833902 125834263 MER57B1 401 + 3 392 47082 56 1 0 247 5 35 22 0 1 7 2 0 21 chain 44673 chr7 159345973 + 125838753 125839243 L1PA4 6152 + 4287 4777 31757 490 chain 16989 chr7 159345973 + 125880287 125880496 L1PA5 6144 + 5934 6144 59813 18 3 4 188 chain 98674 chr7 159345973 + 125883744 125884828 L1PA2 6032 + 4948 6032 18451 1084 chain 37593 chr7 159345973 + 125909964 125910413 LTR7 482 + 0 482 36340 246 0 31 142 12 14 49 chain 287017 chr7 159345973 + 125910415 125914022 HERVH-int 3825 + 0 3816 7229 17 0 1 123 0 1 70 0 11 277 37 89 14 51 1 14 1 0 12 4 1 24 4 3 16 3 23 20 42 1 11 2 1 49 1 0 444 15 0 462 4 31 1389 19 229 482 chain 36480 chr7 159345973 + 125915290 125915739 LTR7 482 + 0 482 37088 263 1 32 124 12 14 49 chain 8605 chr7 159345973 + 125917556 125917742 LTR7 482 + 0 224 73442 69 6 95 21 51 0 39 chain 14672 chr7 159345973 + 125917750 125917952 LTR7 482 + 264 469 62708 101 1 2 52 12 14 36 chain 302239 chr7 159345973 + 125917984 125921822 HERVH-int 3825 + 16 3825 6776 33 7 3 483 6 1 34 2 1 9 1 0 12 38 27 12 66 0 18 3 23 26 2 1 79 0 1 322 0 2 18 0 1 309 9 0 348 0 1 224 1 5 40 47 52 233 37 84 36 21 7 409 0 2 953 chain 8738 chr7 159345973 + 125923700 125923886 LTR7 482 + 0 224 73123 69 6 95 21 51 0 39 chain 12890 chr7 159345973 + 125923894 125924049 LTR7 482 + 264 419 65270 155 chain 3215 chr7 159345973 + 125924061 125924097 LTR7 482 + 433 469 97753 36 chain 27723 chr7 159345973 + 125928786 125929111 L1PA7 6471 + 6144 6470 45286 169 0 1 156 chain 16541 chr7 159345973 + 125940694 125940896 HERVL-int 5654 + 2722 2923 60318 196 1 0 5 chain 25547 chr7 159345973 + 125991693 125991959 AluYa5 310 + 37 303 48407 266 chain 19570 chr7 159345973 + 125994694 125994932 L1PA6 6164 + 5924 6162 56932 238 chain 89198 chr7 159345973 + 125997200 125998284 THE1A-int 1579 + 490 1574 19823 7 1 0 18 5 6 1053 chain 21255 chr7 159345973 + 126034070 126034367 L1P3 4156 + 3396 3692 54816 86 0 1 4 17 17 11 19 17 160 chain 3042 chr7 159345973 + 126041214 126041268 MER52A 1651 + 786 840 99406 4 1 0 22 6 7 21 chain 76697 chr7 159345973 + 126168159 126169127 LTR5_Hs 974 + 0 974 22395 289 0 1 177 0 1 188 1 0 163 8 15 17 22 20 103 chain 43763 chr7 159345973 + 126172681 126173193 MER9a1 513 + 0 513 32278 508 0 1 4 chain 126998 chr7 159345973 + 126194419 126195845 L1PA5 6144 + 4715 6142 14418 1274 0 1 152 chain 480346 chr7 159345973 + 126292169 126298361 L1PA8A 6298 + 36 6292 3627 4 1 0 16 1 0 11 3 0 4 2 0 7 6 1 20 42 31 18 1 0 9 24 21 9 2 0 17 2 0 5 16 14 6 1 0 7 1 0 6 2 1 14 4 0 9 2 0 41 7 6 17 2 0 5 2 0 4 4 0 68 2 0 15 1 0 10 1 0 5 1 0 67 8 7 755 0 3 313 0 1 141 8 6 126 0 1 235 0 1 295 0 2 181 0 9 95 1 0 87 4 5 127 0 1 70 0 4 178 0 6 213 1 0 23 6 3 6 0 5 400 12 10 56 0 1 342 0 7 127 0 1 181 0 1 132 0 42 156 0 8 17 0 14 49 0 22 47 0 1 356 1 3 112 3 0 804 chain 21251 chr7 159345973 + 126328141 126328489 THE1B 368 + 0 368 54821 44 6 21 71 29 36 30 2 0 68 0 1 28 14 13 56 chain 158688 chr7 159345973 + 126344883 126346624 L1PA3long 6157 + 4415 6157 11830 1734 0 1 7 chain 62282 chr7 159345973 + 126384788 126385496 L1PA4 6152 + 5443 6151 25799 708 chain 201528 chr7 159345973 + 126585527 126587834 L1PA5 6144 + 3828 6144 9658 800 0 1 18 0 1 177 1 0 172 1 2 294 5 9 583 1 0 90 0 1 16 1 4 148 chain 80351 chr7 159345973 + 126602742 126603605 L1PA2 6032 + 3373 4236 21562 863 chain 536256 chr7 159345973 + 126613401 126619522 L1PA5 6144 + 3 6142 1552 475 12 10 93 0 2 353 0 1 72 1 0 132 8 11 2014 1 0 35 0 1 1327 0 2 126 1 0 640 0 4 689 8 1 8 0 7 20 0 10 106 chain 144158 chr7 159345973 + 126630323 126632375 L1PA11 4918 + 2463 4504 12761 36 4 5 74 5 0 140 0 3 81 2 1 5 0 1 162 0 1 77 2 0 215 5 0 7 42 44 60 0 3 288 1 0 18 6 5 103 3 4 38 5 6 9 0 1 213 1 2 266 10 5 20 39 38 13 2 0 67 2 0 14 1 0 16 chain 224619 chr7 159345973 + 126649621 126652356 HERVL-int 5654 + 2892 5646 8906 90 1 3 381 15 7 59 4 5 61 0 11 247 2 1 1467 0 1 52 0 6 176 0 4 154 0 3 26 chain 27342 chr7 159345973 + 126668940 126669332 L1PA8 5853 + 5467 5853 45774 97 1 0 44 2 0 71 1 0 13 5 4 44 2 1 17 9 8 76 0 1 10 chain 262689 chr7 159345973 + 126669365 126673000 MER61-int 3695 + 46 3687 7891 48 5 6 171 2 1 27 0 1 12 23 20 70 23 10 61 4 1 168 2 0 89 2 3 45 0 3 66 0 5 291 0 2 99 0 1 186 1 0 39 16 13 44 13 11 80 0 5 156 7 8 316 24 31 430 0 2 47 3 1 150 1 0 9 0 6 81 2 1 38 1 0 245 0 1 4 3 1 13 0 5 134 1 0 182 9 10 39 0 1 78 10 9 65 chain 2711 chr7 159345973 + 126686045 126686097 MER52D 1964 + 1161 1199 102296 27 14 0 11 chain 86457 chr7 159345973 + 126704098 126705150 MER11C 1089 + 0 1059 20332 313 0 4 244 11 12 19 0 1 83 12 16 45 0 1 38 4 0 283 chain 81039 chr7 159345973 + 126712558 126713612 L1PA8 5853 + 4804 5853 21430 203 0 5 58 20 17 104 0 2 46 2 0 323 2 1 45 2 0 79 14 13 40 2 1 19 2 0 93 chain 9911 chr7 159345973 + 126732935 126733122 MER30 238 + 38 238 70593 57 16 32 26 6 0 8 8 14 14 3 0 49 chain 12914 chr7 159345973 + 126739807 126740029 Tigger3a 397 + 158 366 65230 8 10 0 10 0 4 11 12 0 65 0 3 46 9 10 51 chain 22420 chr7 159345973 + 126922649 126923055 MSTA 426 + 0 426 53240 15 0 2 114 2 0 5 9 20 50 73 74 20 0 5 8 2 5 108 chain 70020 chr7 159345973 + 126927507 126928371 L1PA7 6471 + 5597 6458 23992 17 0 3 514 1 0 182 7 0 124 4 6 15 chain 156195 chr7 159345973 + 126963396 126965302 L1PA7 6471 + 4530 6452 11989 76 0 2 53 7 11 107 0 4 686 0 5 144 4 6 507 0 1 153 1 0 9 21 20 138 chain 55736 chr7 159345973 + 126982508 126984272 HERVL-int 5654 + 4884 5654 27652 44 977 0 299 1 0 170 14 1 69 6 0 150 0 2 28 0 1 6 chain 24278 chr7 159345973 + 126984272 126984721 MLT2A2 560 + 0 560 50377 139 91 94 69 2 111 45 0 5 39 12 6 52 chain 6560 chr7 159345973 + 127000000 127000097 L1MA2 4263 + 4013 4105 79119 45 10 5 42 chain 4070 chr7 159345973 + 127077900 127077998 MER20 218 + 57 156 90947 16 39 40 43 chain 8621 chr7 159345973 + 127120447 127120552 MER5A1 166 + 32 137 73406 105 chain 90078 chr7 159345973 + 127167880 127168987 L1PA7 6471 + 5330 6438 19668 93 0 1 197 0 3 185 7 10 62 0 1 129 6 0 195 0 3 102 10 6 121 chain 46321 chr7 159345973 + 127170186 127170966 L1PB1 5432 + 4663 5408 30912 42 0 2 10 7 3 374 22 20 23 9 7 12 20 14 25 1 0 25 2 1 15 1 0 45 2 1 14 2 0 6 16 6 11 9 8 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 4 chain 395672 chr7 159345973 + 127177567 127183027 L1PB1 5432 + 19 5413 5224 257 1 2 128 1 0 166 0 1 4 1 0 184 0 1 375 4 17 110 7 6 124 16 3 5 2 0 67 0 1 74 0 4 53 0 5 50 0 1 187 0 4 19 1 2 131 6 8 5 2 0 441 10 6 35 7 8 178 4 5 12 1 2 475 1 6 661 0 1 8 1 0 110 1 3 28 1 0 219 0 1 32 0 1 371 8 5 190 3 4 211 135 82 6 1 0 24 37 29 52 24 22 40 1 0 15 1 0 4 2 0 11 9 0 16 8 5 14 2 0 24 1 0 21 1 0 13 1 0 9 chain 69595 chr7 159345973 + 127277527 127278299 L1PA4 6152 + 5380 6152 24097 772 chain 12656 chr7 159345973 + 127304689 127304851 Tigger3 1187 + 346 509 65713 20 1 2 141 chain 109039 chr7 159345973 + 127310349 127311549 L1PA3long 6157 + 4955 6157 17178 352 0 1 844 0 1 4 chain 162872 chr7 159345973 + 127311627 127314169 L1MA2 4263 + 1609 4110 11554 87 1 0 52 2 1 40 5 0 8 30 16 33 12 15 25 0 3 70 1 0 7 25 24 101 13 12 55 3 0 5 7 10 50 21 16 90 1 0 30 0 3 177 5 3 102 7 19 19 4 3 90 1 2 157 0 1 60 8 9 25 20 10 223 0 1 300 5 3 18 5 1 77 1 0 41 0 6 51 0 1 4 18 19 24 3 0 37 16 5 105 12 10 93 8 1 12 1 0 4 0 1 29 1 0 5 chain 64672 chr7 159345973 + 127315096 127316559 L1PREC2 3366 + 254 3249 25272 5 1 0 49 4 6 88 1 0 63 1 0 5 11 6 77 2 0 91 0 1 7 6 10 39 4 7 39 0 1671 36 6 6 18 1 0 144 0 3 36 4 14 42 1 0 30 23 8 44 9 8 43 1 0 4 3 0 9 33 25 13 28 21 23 43 26 35 6 4 34 245 156 18 5 0 23 2 0 8 chain 111508 chr7 159345973 + 127428982 127430518 LTR12C 1709 + 0 1709 16879 67 19 17 172 38 34 69 4 3 161 4 11 180 0 159 199 0 47 88 24 0 8 20 13 313 1 0 84 1 0 84 chain 518358 chr7 159345973 + 127450973 127457096 L1PA6 6164 + 4 6161 2347 233 26 28 255 0 15 34 1 0 17 11 1 210 1 18 39 4 0 756 0 1 597 5 7 672 0 1 102 0 1 82 2 1 97 1 0 18 0 1 33 9 7 305 0 9 303 0 2 1055 0 1 209 0 1 1046 chain 21889 chr7 159345973 + 127463826 127464217 MSTC 436 + 0 436 53980 45 0 2 25 35 79 55 0 6 19 8 0 26 39 41 25 1 0 113 chain 17844 chr7 159345973 + 127470346 127470761 L1MA5A 2387 + 2019 2375 58834 14 1 0 5 6 0 32 2 0 34 8 13 38 2 0 10 16 17 33 3 0 15 27 0 65 1 0 7 48 28 10 1 0 22 2 0 13 chain 25688 chr7 159345973 + 127491096 127491379 L1PA5 6144 + 3751 4034 48190 283 chain 56968 chr7 159345973 + 127500898 127501783 L1PREC2 3366 + 2198 3043 27278 397 3 1 93 8 9 19 1 0 30 1 0 5 2 0 11 0 3 40 1 0 44 1 0 4 3 0 13 29 21 12 2 0 5 23 18 28 4 1 11 22 8 35 6 4 12 3 4 17 chain 20670 chr7 159345973 + 127512931 127513175 L1PA7 6471 + 6226 6470 55539 244 chain 39900 chr7 159345973 + 127521606 127522246 L1PA7 6471 + 5859 6470 34738 92 27 0 26 1 0 333 1 0 160 chain 18458 chr7 159345973 + 127523628 127523882 L1PA16 3655 + 3342 3593 58154 140 0 6 7 6 0 83 3 0 15 chain 52077 chr7 159345973 + 127552501 127553091 L1PA5 6144 + 5542 6132 28853 590 chain 25150 chr7 159345973 + 127556623 127556986 THE1B 368 + 0 366 49032 169 1 0 29 9 16 14 3 2 10 1 0 66 7 6 54 chain 11679 chr7 159345973 + 127558292 127558463 THE1B 368 + 0 169 67430 66 20 18 85 chain 11101 chr7 159345973 + 127558519 127558658 THE1B 368 + 230 368 68405 10 1 0 128 chain 103450 chr7 159345973 + 127567457 127568574 L1PA3long 6157 + 5040 6157 17891 1117 chain 31613 chr7 159345973 + 127570656 127571111 LTR2 463 + 0 463 40652 57 1 4 75 6 5 147 8 9 13 4 10 60 0 1 30 1 0 28 1 0 24 chain 6343 chr7 159345973 + 127573717 127573798 Tigger3b 1229 + 771 853 79856 65 0 1 16 chain 29319 chr7 159345973 + 127648985 127649484 LTR64 526 + 0 526 42849 79 0 2 5 19 16 151 5 0 3 20 0 23 1 0 9 0 38 83 30 48 49 2 0 20 chain 7080 chr7 159345973 + 127774875 127774968 Tigger3 1187 + 915 1007 77330 63 1 0 29 chain 3544 chr7 159345973 + 127815221 127815260 MLT1C 463 + 66 105 94919 39 chain 69673 chr7 159345973 + 127966194 127966952 L1PA2 6032 + 2355 3114 24079 4 0 1 754 chain 25981 chr7 159345973 + 128097690 128097985 AluY 311 + 5 298 47743 286 2 0 7 chain 3977 chr7 159345973 + 128122757 128122837 L1MB3 1562 + 1442 1524 91590 27 17 15 21 0 3 5 0 1 10 chain 74947 chr7 159345973 + 128238766 128239737 MER11A 1151 + 0 1151 22855 85 0 91 54 2 1 63 4 0 146 4 5 93 0 1 145 5 6 112 0 81 33 0 9 10 1 2 30 1 0 16 0 1 167 chain 14516 chr7 159345973 + 128269279 128269499 L1MA2 4263 + 3740 4014 62881 69 4 1 47 2 0 29 1 61 11 1 0 6 2 1 38 0 1 10 chain 6053 chr7 159345973 + 128291344 128291996 MER11A 1151 + 9 761 24848 62 1 100 59 1 0 62 3 0 3 1 0 84 1 3 61 0 1 94 0 1 145 5 6 38 0 1 32 chain 553893 chr7 159345973 + 128292013 128298135 L1PA3long 6157 + 0 6149 489 710 0 7 473 0 3 372 4 6 363 0 1 3371 0 1 490 1 10 263 1 2 68 0 3 6 chain 3286 chr7 159345973 + 128298141 128298495 MER11A 1151 + 761 1151 24848 47 0 1 17 0 33 31 0 1 29 0 1 14 1 2 30 1 0 16 0 1 61 1 0 106 chain 83797 chr7 159345973 + 128367400 128371230 L1MA3 4352 + 575 4204 20851 38 0 8 152 2 0 20 0 3 56 1 0 6 13 5 11 1 0 51 11 14 88 0 2 49 4 3 29 1 0 45 1 4 41 78 10 11 0 3 7 3 0 13 1742 2160 162 2 1 61 6 1 130 627 95 208 0 4 27 33 13 6 3 0 27 0 1 51 1 0 4 0 1 8 chain 6052 chr7 159345973 + 128415564 128415735 MER20 218 + 36 211 80890 19 48 43 48 30 39 26 chain 121360 chr7 159345973 + 128462851 128464284 SVA_B 1603 + 20 1603 15286 16 24 8 22 0 5 635 4 7 65 0 40 28 0 123 45 2 0 386 1 0 197 2 0 6 chain 4989 chr7 159345973 + 128520706 128521091 MER41B 635 + 478 547 85707 17 316 0 52 chain 9167 chr7 159345973 + 128600990 128601093 Harlequin-int 5206 + 485 588 72194 103 chain 21471 chr7 159345973 + 128624308 128624587 AluSp 311 + 4 286 54552 49 12 14 43 0 1 175 chain 118852 chr7 159345973 + 128661628 128663169 THE1B-int 1605 + 0 1600 15735 15 0 2 7 9 10 398 25 50 31 3 8 206 13 14 87 8 2 215 0 30 9 0 1 515 chain 24993 chr7 159345973 + 128663174 128663529 THE1B 368 + 0 368 49289 44 5 20 16 1 2 90 1 0 20 2 0 64 0 1 36 1 0 13 1 0 4 0 1 57 chain 136727 chr7 159345973 + 128688785 128690406 SVA_C 1631 + 18 1616 13363 625 0 8 69 40 0 135 7 10 5 2 0 7 1 2 18 12 17 10 0 1 42 0 1 34 1 0 16 1 0 495 0 2 101 chain 22732 chr7 159345973 + 128691428 128691797 MER41B 635 + 0 635 52781 125 1 2 25 6 33 92 13 246 4 1 0 22 0 5 6 25 26 49 chain 9470 chr7 159345973 + 128697451 128697558 5S 121 + 14 121 71556 107 chain 4720 chr7 159345973 + 128697695 128697744 5S 121 + 7 56 87125 49 chain 6948 chr7 159345973 + 128783449 128783521 tRNA-Pro-CCY 72 + 0 72 77785 72 chain 38943 chr7 159345973 + 128789839 128790378 MER41A 554 + 0 549 35401 229 11 9 68 23 23 48 0 10 43 0 1 47 0 1 70 chain 43197 chr7 159345973 + 128895517 128896053 MER41A 554 + 0 554 32652 93 0 1 81 0 12 128 11 11 142 0 5 81 chain 120723 chr7 159345973 + 128898441 128900318 PABL_A-int 1935 + 99 1915 15397 8 2 0 12 1 0 16 14 4 187 22 20 63 5 0 4 6 0 13 0 2 97 11 1 23 1 0 47 2 0 5 10 13 220 0 3 151 1 0 45 1 0 41 1 0 12 8 5 25 0 5 18 12 26 69 0 2 55 0 1 176 32 6 4 0 1 35 3 1 7 1 0 84 1 0 81 5 0 10 1 5 21 0 1 33 15 14 65 2 1 18 1 0 15 42 28 17 chain 47259 chr7 159345973 + 128900883 128901746 MER41A 554 + 0 554 30551 50 1 0 43 0 1 359 309 0 101 chain 4979 chr7 159345973 + 128906778 128906858 MADE1 96 - 0 96 85754 32 10 26 38 chain 5466 chr7 159345973 + 128918189 128918255 MER53 195 + 0 66 83372 66 chain 3864 chr7 159345973 + 128956568 128956613 Tigger4a 237 - 189 234 92387 45 chain 11225 chr7 159345973 + 129001394 129001590 MER2 342 + 143 318 68209 135 44 23 17 chain 26201 chr7 159345973 + 129034992 129035277 AluYk4 311 + 0 285 47419 285 chain 5565 chr7 159345973 + 129057825 129057956 L1MB7 1623 + 910 1041 82959 26 28 30 21 8 7 43 1 0 4 chain 15769 chr7 159345973 + 129116564 129116779 L1PA8 5853 + 5637 5849 61325 42 1 0 7 5 4 50 2 1 19 1 0 76 0 1 12 chain 9159 chr7 159345973 + 129164848 129164955 HY1 111 + 0 107 72211 107 chain 125875 chr7 159345973 + 129215743 129217277 SVA_A 1864 + 10 1864 14577 5 1 0 264 0 4 251 0 3 39 5 4 33 3 0 40 2 0 20 0 37 17 2 0 36 1 0 77 2 0 29 9 301 35 3 0 40 2 0 603 0 1 15 chain 3450 chr7 159345973 + 129405635 129405674 U7 62 + 1 40 95649 39 chain 17108 chr7 159345973 + 129490603 129490847 MER2 342 + 89 336 59683 15 4 5 122 0 1 87 4 5 12 chain 4737 chr7 159345973 + 129578829 129578886 LTR2 463 + 406 463 87029 57 chain 241398 chr7 159345973 + 129579733 129582631 Harlequin-int 5206 + 150 3039 8443 144 3 0 191 2 0 103 0 1 93 1 0 626 0 6 387 0 2 241 2 0 543 10 0 552 chain 16192 chr7 159345973 + 129637750 129637984 MER30 238 + 0 238 60757 107 16 0 11 3 20 58 0 3 39 chain 5506 chr7 159345973 + 129658862 129659002 MER2 342 + 135 278 83212 6 0 5 43 57 55 34 chain 27110 chr7 159345973 + 129673447 129673735 AluYd8 298 + 0 288 46112 288 chain 14840 chr7 159345973 + 129693432 129693654 MER30 238 + 0 236 62462 106 4 0 10 24 42 78 chain 21786 chr7 159345973 + 129715750 129716024 AluSp 311 + 28 294 54109 121 5 4 129 7 0 12 chain 25115 chr7 159345973 + 129722112 129722409 AluSp 311 + 0 300 49094 91 0 3 206 chain 23462 chr7 159345973 + 129784213 129784501 AluSp 311 + 0 284 51645 85 4 0 199 chain 44989 chr7 159345973 + 129867237 129867712 L1HS 6032 + 5557 6032 31590 475 chain 6134 chr7 159345973 + 129954009 129954117 MER5A1 166 + 36 146 80594 32 16 19 25 1 0 34 chain 8397 chr7 159345973 + 129954693 129954792 HY3 101 + 1 100 73907 99 chain 10288 chr7 159345973 + 129984912 129985047 L1MA5 2750 + 1929 2068 69831 53 1 5 81 chain 7269 chr7 159345973 + 130027276 130027364 5S 121 + 0 88 76767 88 chain 7714 chr7 159345973 + 130058564 130058705 MER2 342 + 133 278 75584 76 19 13 23 10 20 13 chain 3154 chr7 159345973 + 130180284 130180349 L1MB8 1703 + 874 940 98328 20 17 18 28 chain 20828 chr7 159345973 + 130222683 130223026 MER1B 344 + 29 344 55329 80 6 0 107 26 0 20 0 8 17 29 25 58 chain 32335 chr7 159345973 + 130224441 130225271 LTR8 732 + 31 577 40087 11 6 0 61 0 7 46 320 6 139 20 47 95 0 1 4 1 0 56 0 5 18 32 29 21 chain 117977 chr7 159345973 + 130229840 130231228 LTR12C 1709 + 0 1708 15890 792 9 325 107 0 4 480 chain 34712 chr7 159345973 + 130235116 130235870 MLT2A1 477 + 0 477 38217 17 0 4 147 5 2 191 312 0 24 3 37 55 chain 49291 chr7 159345973 + 130244971 130245723 L1PA13 3608 + 2819 3546 29835 232 1 0 45 0 1 32 1 0 30 1 0 108 8 6 60 2 1 22 1 0 30 1 0 10 2 0 47 2 0 5 6 9 11 1 0 19 0 3 7 44 28 10 1 0 5 2 0 6 chain 4188 chr7 159345973 + 130258285 130258388 MER61-int 3695 + 29 130 90218 5 2 0 10 3 2 15 24 25 44 chain 9078 chr7 159345973 + 130317256 130317362 Tigger3c 601 + 412 518 72384 106 chain 2793 chr7 159345973 + 130337158 130337188 MER58B 340 + 66 96 101695 30 chain 3438 chr7 159345973 + 130360121 130360224 LTR19A 502 + 402 502 95758 20 52 49 31 chain 24571 chr7 159345973 + 130376481 130376819 THE1B 368 + 0 348 49899 44 18 33 91 2 0 32 2 0 92 2 1 55 chain 4369 chr7 159345973 + 130422865 130422936 L1MB7 1623 + 941 1011 89058 43 11 10 17 chain 55289 chr7 159345973 + 130480811 130481404 L1HS 6032 + 5439 6032 27780 593 chain 18350 chr7 159345973 + 130558158 130558522 MSTA 426 + 5 403 58304 103 5 26 21 1 5 35 84 85 16 0 5 10 3 6 86 chain 16022 chr7 159345973 + 130566268 130566484 L1PA15 4387 + 3961 4180 61000 143 1 0 16 0 5 5 1 0 50 chain 264738 chr7 159345973 + 130567813 130571830 L1PB2 3958 + 85 3837 7832 19 9 4 24 9 6 35 378 119 11 4 6 111 0 3 45 0 1 565 8 16 200 11 0 42 0 2 27 0 10 6 6 1 60 8 6 96 1 0 80 4 5 12 1 0 230 0 1 35 5 6 276 1 3 220 0 2 109 1 2 87 0 5 58 7 8 68 14 10 29 1 0 178 1 0 22 5 6 170 0 5 176 13 11 47 1 0 13 5 0 65 2 0 12 5 0 39 1 0 55 8 10 59 8 7 46 1 0 14 0 1 71 2 0 22 1 0 62 chain 88624 chr7 159345973 + 130574360 130577141 L1PB1 5432 + 115 2842 5391 16 0 2 171 7 8 90 7 0 191 11 9 151 0 2 385 1 2 216 2 0 37 1 0 6 16 1 129 6 10 41 37 44 350 0 2 247 1 2 39 0 3 71 43 5 93 7 1 54 11 0 84 0 5 260 chain 554151 chr7 159345973 + 130577159 130583509 L1PA2 6032 + 3 6032 470 210 0 1 104 333 4 1942 0 4 2274 0 1 869 0 1 455 0 1 163 chain 83526 chr7 159345973 + 130583836 130586457 L1PB1 5432 + 2842 5424 5391 12 3 4 7 6 0 235 1 3 341 6 12 21 7 3 249 1 3 189 9 0 77 0 2 458 1 0 76 2 1 93 0 1 175 1 0 90 1 0 80 0 1 34 0 1 93 7 6 5 1 0 24 2 0 9 1 0 7 9 5 8 2 0 52 1 0 61 1 0 16 1 0 4 45 33 13 2 0 24 1 0 21 4 3 10 1 0 16 1 0 4 chain 112082 chr7 159345973 + 130587544 130588807 L1PA4 6152 + 4891 6152 16800 410 2 0 355 4 4 492 chain 165569 chr7 159345973 + 130590217 130592411 SVA_D 2077 + 1 2072 11369 18 5 0 523 0 80 102 0 3 34 3 0 156 101 0 25 77 0 5 11 0 33 77 0 39 0 1 6 0 1 7 9 27 6 0 1 35 1 0 267 0 49 299 2 1 353 chain 8171 chr7 159345973 + 130591058 130591159 SVA_D 2077 + 1002 1104 31877 22 4 0 6 2 8 48 1 0 18 chain 6229 chr7 159345973 + 130591184 130591261 SVA_D 2077 + 1129 1207 31877 44 0 1 33 chain 6229 chr7 159345973 + 130591310 130591387 SVA_D 2077 + 1256 1333 31877 77 chain 11720 chr7 159345973 + 130595642 130595810 MER41E 591 + 403 575 67364 24 0 5 17 12 11 115 chain 64120 chr7 159345973 + 130601061 130601829 L1PA7 6471 + 5704 6466 25390 152 0 3 60 0 1 307 2 0 82 1 2 116 9 0 39 chain 25251 chr7 159345973 + 130609212 130609562 THE1B 368 + 0 364 48870 44 5 20 67 7 11 30 2 1 19 4 0 172 chain 11911 chr7 159345973 + 130626242 130626691 LTR19A 502 + 103 502 66981 50 11 0 20 0 37 15 215 141 64 39 37 35 chain 25072 chr7 159345973 + 130627211 130627643 MER83 447 + 0 433 49165 151 1 0 90 5 7 65 49 52 15 35 32 21 chain 3488 chr7 159345973 + 130700453 130700584 LTR16A2 485 + 123 261 95337 30 78 85 23 chain 43184 chr7 159345973 + 130703405 130703864 L1HS 6032 + 4110 4569 32660 459 chain 120321 chr7 159345973 + 130860372 130861915 THE1A-int 1579 + 0 1571 15477 150 1 13 163 2 1 66 2 1 22 2 1 77 5 4 92 3 1 90 12 28 120 11 16 470 1 2 254 chain 28682 chr7 159345973 + 130861923 130862276 THE1A 353 + 0 353 43830 109 2 1 88 1 0 120 0 2 33 chain 8324 chr7 159345973 + 130874842 130874961 MER85 139 + 5 138 74099 44 3 7 33 1 11 38 chain 36109 chr7 159345973 + 130891934 130892319 L1HS 6032 + 5644 6029 37337 385 chain 15039 chr7 159345973 + 130907153 130907356 L1PA7 6471 + 6258 6461 62214 49 18 18 136 chain 39239 chr7 159345973 + 131005822 131006262 L1PA3long 6157 + 5713 6157 35184 300 0 2 75 0 2 65 chain 9310 chr7 159345973 + 131059233 131059528 LTR12C 1709 + 773 1196 71890 59 0 81 47 151 73 26 0 125 12 chain 31557 chr7 159345973 + 131071956 131072406 MER41B 635 + 97 549 40697 29 0 1 324 31 30 27 0 1 16 5 6 18 chain 14269 chr7 159345973 + 131097144 131097355 MER30 238 + 0 238 63237 13 8 26 69 4 16 74 3 0 40 chain 11053 chr7 159345973 + 131117965 131118229 MSTB 430 + 0 285 68482 83 1 2 28 82 100 30 16 18 24 chain 27144 chr7 159345973 + 131122739 131123049 AluYk4 311 + 0 308 46059 132 2 0 176 chain 5484 chr7 159345973 + 131161391 131161457 Tigger4b 360 + 0 66 83297 66 chain 114631 chr7 159345973 + 131259835 131261855 L1PA15 4387 + 2654 4356 16449 148 19 11 24 0 1 8 299 28 98 0 7 51 0 4 95 0 14 23 2 3 88 1 28 23 71 0 50 4 8 446 2 0 21 4 0 58 3 1 37 4 3 83 0 2 87 1 0 26 1 0 55 1 0 17 4 0 13 4 3 19 3 0 30 6 3 44 3 1 11 6 3 27 chain 21547 chr7 159345973 + 131287699 131288070 THE1D 372 + 0 357 54441 46 10 1 10 20 21 88 26 26 137 20 14 14 chain 24564 chr7 159345973 + 131298001 131298284 AluYc 301 + 0 285 49915 120 0 2 163 chain 459652 chr7 159345973 + 131315725 131321585 L1PA8 5853 + 50 5853 4139 22 2 0 10 63 26 118 31 15 61 18 6 90 24 0 240 0 3 6 3 0 25 1 0 608 0 3 113 0 1 4 3 2 503 0 2 79 0 15 16 13 0 71 0 4 36 13 1 351 0 4 133 0 2 281 5 6 22 0 4 30 0 5 627 0 2 244 1 0 104 11 11 48 0 14 39 0 1 135 0 2 811 1 0 3 2 0 42 15 16 171 1 0 174 0 2 107 1 4 39 1 0 46 2 0 48 4 7 33 1 2 40 2 1 112 chain 10376 chr7 159345973 + 131590107 131590233 L1PB4 2604 + 2426 2552 69659 126 chain 23102 chr7 159345973 + 131590449 131590745 AluSp 311 + 10 301 52209 30 0 1 83 7 0 157 0 1 19 chain 58347 chr7 159345973 + 131773757 131774506 MER4E1 777 + 0 777 26850 24 1 0 97 0 4 59 4 6 101 4 0 38 0 19 193 1 9 48 1 0 49 0 1 129 chain 39148 chr7 159345973 + 131855896 131856407 THE1D-int 1627 + 0 512 35252 9 0 1 4 2 1 22 1 0 150 0 1 239 4 5 80 chain 8898 chr7 159345973 + 131909870 131910093 LTR12C 1709 + 650 1034 72789 33 5 5 48 72 155 26 0 37 23 1 42 15 chain 17248 chr7 159345973 + 131984880 131985119 MER1B 344 + 41 344 59528 39 9 8 141 0 65 50 chain 51766 chr7 159345973 + 132015467 132016226 L1PB1 5432 + 4677 5413 28948 120 1 0 6 0 3 136 0 1 58 0 1 101 5 4 6 1 0 25 1 0 9 1 0 9 2 0 3 2 0 8 2 0 53 2 1 15 1 0 31 8 14 15 15 2 29 2 0 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 9 chain 65740 chr7 159345973 + 132033681 132034402 L1P1 4361 + 2300 3021 25019 721 chain 119149 chr7 159345973 + 132057571 132059132 THE1B-int 1605 + 0 1594 15671 21 0 1 270 6 5 134 0 30 332 7 8 37 20 19 117 1 3 130 0 1 486 chain 3453 chr7 159345973 + 132084824 132084976 MER51A 677 + 179 344 95626 14 86 8 27 2 93 23 chain 7081 chr7 159345973 + 132089327 132089468 L1MC2 1988 + 1847 1988 77320 64 41 41 36 chain 44640 chr7 159345973 + 132115242 132115790 MER41A 554 + 0 554 31770 430 0 1 34 11 16 73 chain 51646 chr7 159345973 + 132389864 132390479 L1PA7 6471 + 5757 6373 28985 591 0 1 24 chain 6039 chr7 159345973 + 132470512 132470920 MLT1D 503 + 22 407 80929 69 314 291 25 chain 5664 chr7 159345973 + 132498618 132498687 MER44A 345 + 245 314 82496 69 chain 21870 chr7 159345973 + 132605911 132606179 AluSz6 309 + 30 298 54013 268 chain 28937 chr7 159345973 + 132634787 132635167 MLT2A1 477 + 0 385 43424 15 12 20 133 6 3 214 chain 78367 chr7 159345973 + 132664481 132665348 L1PA3long 6157 + 2935 3801 22011 235 2 1 630 chain 60116 chr7 159345973 + 132695358 132696036 L1PA5 6144 + 5459 6137 26337 678 chain 12233 chr7 159345973 + 132707245 132707395 Tigger4b 360 + 149 303 66415 19 0 4 131 chain 4481 chr7 159345973 + 132808894 132808943 L1PA2 6032 + 5729 5778 88431 49 chain 60960 chr7 159345973 + 132902134 132902828 L1PA5 6144 + 5450 6144 26120 694 chain 48973 chr7 159345973 + 132904669 132905249 L1PA6 6164 + 5583 6156 29964 310 4 0 91 3 0 172 chain 175392 chr7 159345973 + 132984019 132986414 SVA_D 2077 + 1 2077 10810 12 5 0 12 5 0 535 0 40 87 0 40 190 2 0 30 90 1 38 0 2 45 138 13 300 179 0 630 0 4 97 chain 7302 chr7 159345973 + 132984897 132984987 SVA_D 2077 + 1085 1175 34188 90 chain 2680 chr7 159345973 + 132985070 132985108 SVA_D 2077 + 1084 1122 39407 38 chain 8114 chr7 159345973 + 132985108 132985208 SVA_D 2077 + 1249 1349 34188 100 chain 12130 chr7 159345973 + 132985508 132985679 SVA_D 2077 + 1219 1341 39227 30 49 0 92 chain 3245 chr7 159345973 + 132985538 132985587 SVA_D 2077 + 1073 1122 45597 49 chain 22907 chr7 159345973 + 133089683 133090025 THE1C 375 + 0 350 52504 47 0 6 17 16 17 116 17 18 129 chain 121409 chr7 159345973 + 133176959 133178325 SVA_D 2077 + 13 2072 15275 16 3 7 558 0 40 49 0 77 118 0 535 78 0 37 544 chain 3881 chr7 159345973 + 133180999 133181173 MLT1H 522 + 315 486 92281 24 111 108 39 chain 313816 chr7 159345973 + 133210518 133214641 L1PA7 6471 + 2644 6470 6541 49 0 8 329 18 17 293 4 5 237 0 1 426 1 0 571 2 1 87 0 4 277 1 0 671 2 1 692 0 1 22 307 0 134 chain 15967 chr7 159345973 + 133269946 133270308 THE1B 368 + 0 368 61070 44 84 79 46 10 11 16 3 0 5 29 42 125 chain 29576 chr7 159345973 + 133338312 133338623 AluYb8 318 + 1 312 42509 311 chain 21013 chr7 159345973 + 133380003 133380239 L1PA5 6144 + 5898 6134 55102 236 chain 29599 chr7 159345973 + 133422936 133423252 AluYb9 318 + 0 315 42485 200 1 0 115 chain 63128 chr7 159345973 + 133423616 133424568 LTR12D 1347 + 0 1340 25596 70 1 44 93 91 129 23 0 1 142 1 209 120 9 12 17 11 20 68 0 81 20 10 9 24 1 0 90 0 1 29 0 6 132 chain 29123 chr7 159345973 + 133581476 133581782 AluYk12 309 + 0 306 43157 306 chain 15356 chr7 159345973 + 133682357 133682579 THE1A 353 + 120 353 61844 73 6 5 20 12 24 111 chain 47758 chr7 159345973 + 133686549 133687400 L1PB1 5432 + 4643 5427 30375 17 0 4 133 2 1 5 0 9 36 0 2 203 4 3 41 63 17 20 1 0 12 1 0 10 22 16 48 23 18 43 1 0 8 29 19 19 2 0 5 2 1 13 2 0 23 2 1 21 1 0 13 1 0 18 2 0 5 chain 3364 chr7 159345973 + 133705525 133705566 MER44D 709 + 39 80 96440 41 chain 24329 chr7 159345973 + 133796474 133796767 AluSc 308 + 0 290 50287 15 3 0 275 chain 38753 chr7 159345973 + 133834115 133834621 LTR10D 510 + 0 510 35523 62 10 12 4 0 1 22 1 0 161 1 2 75 1 2 169 chain 20489 chr7 159345973 + 133856847 133857095 AluSc8 310 + 29 283 55792 104 7 13 137 chain 63847 chr7 159345973 + 133906311 133907069 LTR17 781 + 0 781 25444 25 0 1 64 1 0 236 1 2 387 0 22 44 chain 10533 chr7 159345973 + 133960532 133960652 L1PB 1623 + 728 848 69356 120 chain 16048 chr7 159345973 + 134092510 134092712 L1PA15-16 3068 + 974 1176 60961 202 chain 64041 chr7 159345973 + 134113737 134114637 MER4D1 891 + 0 882 25404 26 11 0 21 4 5 67 4 11 89 4 1 132 0 1 77 2 1 146 4 0 152 10 0 37 0 1 36 5 4 62 0 2 11 chain 4274 chr7 159345973 + 134216063 134216160 MIR 256 + 77 194 89663 20 14 32 31 12 14 20 chain 529378 chr7 159345973 + 134239096 134245196 L1PA5 6144 + 0 6144 1865 121 0 14 24 7 19 966 0 5 20 9 0 817 0 1 326 3 1 647 0 2 212 0 1 506 1 0 8 0 1 666 0 3 934 1 0 357 0 1 134 1 2 180 0 16 160 chain 13813 chr7 159345973 + 134410637 134410955 THE1D 372 + 72 372 63860 29 6 5 54 0 1 14 115 97 100 chain 3609 chr7 159345973 + 134463497 134463538 L1M2c 2366 + 593 634 94340 41 chain 7468 chr7 159345973 + 134481674 134481763 MER31A 484 + 0 89 76205 89 chain 18818 chr7 159345973 + 134520559 134520769 L1PA7 6471 + 6247 6457 57754 210 chain 30505 chr7 159345973 + 134521976 134522702 MER4A1 472 + 30 472 41565 41 4 5 26 309 0 94 0 3 26 0 21 120 0 3 5 4 1 97 chain 39980 chr7 159345973 + 134546176 134546683 LTR10D 510 + 0 510 34671 65 9 11 26 1 0 168 0 1 113 0 1 125 chain 70586 chr7 159345973 + 134553444 134555891 HERVS71-int 4705 + 2385 4446 23847 15 1 0 8 7 4 11 3 0 8 1 0 7 1 0 4 10 6 10 35 23 9 1 0 4 1 0 11 2 1 9 3 0 42 1 0 53 1 0 18 5 4 38 2 0 17 2 0 9 2 1 21 23 17 10 2 1 13 3 1 12 1 0 10 81 64 21 1 0 6 9 7 32 2 0 8 1 0 8 2 1 13 82 8 19 1 0 20 1 0 4 1 0 8 1 0 16 144 112 40 1 0 12 16 13 13 8 5 19 1 0 13 1 0 10 3 0 9 1 0 9 21 15 13 27 20 4 1 0 27 35 29 15 2 1 11 8 6 57 25 20 7 1 0 28 1 0 33 5 2 53 2 0 18 1 0 36 1 0 10 2 0 11 1 0 12 2 0 8 8 4 32 1 0 7 1 0 4 2 0 4 1 0 29 9 5 19 1 0 7 1 0 4 1 0 33 4 1 22 1 0 18 2 0 6 10 9 16 2 0 16 1 0 20 1 0 38 2 1 11 4 2 13 23 18 47 1 0 12 6 4 14 2 0 18 2 0 6 144 104 19 170 113 20 2 1 14 20 12 15 chain 85201 chr7 159345973 + 134569568 134570616 MER11B 1079 + 0 1057 20585 358 0 5 407 1 3 138 8 9 56 1 0 11 0 1 42 0 1 26 chain 180187 chr7 159345973 + 134588033 134590816 HERV17-int 4347 + 12 4347 10582 15 1 0 50 2 1 15 2 0 19 2 0 27 1 0 45 514 0 97 0 5 44 14 444 577 1 2 117 1 2 143 33 0 124 3 0 321 0 1672 615 chain 33606 chr7 159345973 + 134665252 134665611 L1HS 6032 + 5657 6016 38994 359 chain 11187 chr7 159345973 + 134765630 134765760 MSTA 426 + 18 148 68266 130 chain 2782 chr7 159345973 + 134868810 134868847 MIRb 242 + 41 76 101753 25 2 0 10 chain 3712 chr7 159345973 + 134875683 134875728 MER61A 341 + 295 341 93522 34 0 1 11 chain 5926 chr7 159345973 + 134877588 134877680 MER2 342 + 80 173 81374 44 8 9 40 chain 40793 chr7 159345973 + 134895742 134896313 LTR10A 586 + 0 571 34102 164 1 0 37 6 7 72 2 3 116 0 1 103 30 11 8 0 17 32 chain 15777 chr7 159345973 + 134902936 134903303 L1MC1 2226 + 1848 2197 61311 6 1 0 31 9 3 29 1 0 63 3 0 16 2 0 49 27 18 19 6 1 15 49 59 27 1 0 13 chain 19052 chr7 159345973 + 134924730 134925093 THE1D 372 + 11 372 57494 43 9 0 11 25 26 32 5 9 34 9 10 13 22 23 12 1 0 135 1 2 11 chain 519492 chr7 159345973 + 134976002 134982145 L1PA5 6144 + 7 6132 2294 113 0 14 70 0 1 738 21 0 211 24 15 356 0 1 311 0 1 101 1 0 374 2 1 89 0 1 754 1 0 18 1 0 703 2 0 1283 5 4 4 0 1 123 1 0 128 0 1 709 chain 3547 chr7 159345973 + 134983898 134983935 Tigger2a 444 + 52 89 94876 37 chain 23807 chr7 159345973 + 135019594 135019855 L1PA5 6144 + 4661 4922 51092 261 chain 105910 chr7 159345973 + 135019855 135021065 L1PA5 6144 + 4926 6144 17575 371 0 4 688 0 1 136 0 3 15 chain 538978 chr7 159345973 + 135066758 135072924 L1PA4 6152 + 7 6152 1401 115 5 6 418 3 0 596 0 2 92 0 1 224 0 1 480 1 0 164 1 4 66 1 5 70 0 2 53 0 1 198 0 2 392 0 1 59 0 1 205 1 0 1183 0 4 149 0 1 52 40 0 830 1 0 612 0 1 155 chain 4931 chr7 159345973 + 135077677 135077741 MER50B 698 + 548 611 85988 46 1 0 17 chain 483290 chr7 159345973 + 135121701 135131423 L1PA8A 6298 + 34 6290 3571 6 1 0 16 1 0 11 3 0 6 34 27 19 26 12 16 2 1 9 2 1 18 2 0 13 2 0 13 9 6 13 57 47 40 2 1 21 9 1 77 2 0 16 1 0 8 5 3 75 1 0 590 1 5 34 1 0 33 0 1 329 13 15 200 0 2 782 4 0 59 0 1 141 0 2 102 2 0 370 2 0 185 1 0 10 8 9 10 0 1 7 2 1 19 0 4 58 0 1 4 0 1 144 4 7 68 8 7 493 5 6 244 0 1 78 0 1 125 0 4 239 10 8 46 0 22 310 0 1 199 2 1 37 0 2 52 298 0 9 9 0 96 1 0 283 1 2 30 3138 0 69 1 0 220 chain 6801 chr7 159345973 + 135171129 135171242 HERV1_LTRd 520 + 9 124 78320 22 0 3 29 1 2 17 6 4 38 chain 186909 chr7 159345973 + 135173061 135175838 Harlequin-int 5206 + 142 3715 10258 17 11 11 52 42 41 19 0 4 8 17 15 47 16 14 56 6 2 17 6 8 32 3 0 401 1 779 296 0 6 291 104 95 138 1 0 211 0 3 90 10 11 66 0 1 47 9 22 192 3 4 160 0 1 5 1 0 77 4 3 42 37 46 25 6 6 115 23 26 29 7 0 9 3 8 25 chain 25695 chr7 159345973 + 135181466 135181885 HERV1_LTRd 520 + 0 414 48182 14 0 3 6 0 3 37 8 12 75 0 1 4 1 0 69 8 11 12 4 0 85 14 5 22 7 2 53 chain 174475 chr7 159345973 + 135295261 135297449 L1PA8 5853 + 3646 5853 10870 66 0 6 415 0 9 198 6 4 117 0 5 436 0 1 106 0 2 84 3 6 266 10 12 125 2 0 47 0 1 12 1 0 46 2 0 68 2 1 8 2 1 38 0 1 8 7 6 19 1 0 93 chain 39834 chr7 159345973 + 135300471 135301003 LTR19B 566 + 0 566 34791 106 0 13 43 0 12 320 32 42 24 1 0 6 chain 11604 chr7 159345973 + 135307898 135308070 THE1D 372 + 0 165 67562 15 1 3 38 10 1 108 chain 10068 chr7 159345973 + 135463579 135463772 L1PA14 3548 + 3306 3481 70265 17 1 0 9 16 11 33 5 3 14 1 0 5 1 0 17 1 0 40 6 0 10 1 0 16 chain 14922 chr7 159345973 + 135516431 135516651 MER30 238 + 0 238 62366 109 14 35 45 3 0 49 chain 4421 chr7 159345973 + 135528837 135528920 MER5A1 166 + 1 84 88781 17 11 14 8 3 0 44 chain 18111 chr7 159345973 + 135535602 135535837 THE1A 353 + 0 234 58556 109 2 1 124 chain 17186 chr7 159345973 + 135560637 135560944 L1MB2 1706 + 1385 1686 59587 66 1 4 24 3 4 91 35 24 13 1 0 11 8 7 15 0 3 39 chain 39669 chr7 159345973 + 135639715 135640224 L1PA8 5853 + 5349 5853 34910 45 0 2 77 1 2 4 1 0 85 1 0 46 2 0 69 1 0 14 1 0 47 3 2 18 2 1 92 chain 5575 chr7 159345973 + 135836361 135836458 MLT2B1 522 + 402 514 82911 54 15 30 28 chain 21609 chr7 159345973 + 135850578 135850816 L1PA3long 6157 + 3320 3558 54342 238 chain 34549 chr7 159345973 + 135881128 135881645 L1PA16 3655 + 2073 2595 38319 41 2 1 274 0 4 46 51 53 103 chain 44851 chr7 159345973 + 135909438 135909978 MER41A 554 + 15 554 31666 511 1 0 28 chain 4242 chr7 159345973 + 135964945 135965100 MER58A 224 + 46 208 89865 30 89 96 36 chain 17164 chr7 159345973 + 135969051 135969251 L1PA2 6032 + 5837 6032 59612 29 5 0 166 chain 11011 chr7 159345973 + 135992882 135993001 L1PA2 6032 + 5912 6031 68542 119 chain 14866 chr7 159345973 + 136138480 136138710 Tigger4a 237 + 5 237 62431 123 12 13 38 6 0 8 4 11 39 chain 30757 chr7 159345973 + 136172517 136172941 L1PA8 5853 + 5431 5848 41343 129 13 12 38 2 0 68 2 1 11 1 0 50 2 1 19 1 0 88 chain 22906 chr7 159345973 + 136191282 136191577 AluSp 311 + 6 294 52505 104 2 1 143 6 0 40 chain 295414 chr7 159345973 + 136222175 136226259 L1PA7 6471 + 3 6200 6965 197 4 8 34 26 34 91 4 3 42 15 1 103 8 0 129 5 7 523 0 1 217 0 3 273 0 1 37 0 21 103 6 0 495 0 1 21 0 1 209 4 2354 66 1 0 6 10 11 336 304 3 139 0 5 143 1 0 81 0 2 62 0 5 45 0 27 68 0 13 276 chain 14080 chr7 159345973 + 136300855 136301126 L1PA11 4918 + 4314 4567 63484 11 0 1 6 2 0 61 3 2 74 4 3 16 1 0 20 44 31 15 1 0 13 chain 273247 chr7 159345973 + 136431646 136435039 L1PA7 6471 + 730 6466 7628 284 2 3 184 1 8 117 9 8 61 1 4 288 11 10 179 3 27 35 9 0 8 0 2310 266 0 2 147 0 4 274 1 0 117 0 1 430 2 1 119 1 4 836 0 1 8 chain 70092 chr7 159345973 + 136442903 136443872 L1PB 1623 + 428 1376 23975 50 19 0 7 0 5 349 4 3 122 3 2 89 0 2 37 0 1 208 18 10 63 chain 2929 chr7 159345973 + 136486979 136487131 MER5B 177 - 5 158 100596 19 6 7 15 1 0 7 83 84 21 chain 21165 chr7 159345973 + 136491756 136492108 THE1D 372 + 0 372 54931 61 6 16 89 27 30 5 2 0 15 14 22 95 5 6 33 chain 40476 chr7 159345973 + 136539565 136540174 L1PA8 5853 + 5210 5837 34326 272 19 47 13 1 0 22 1 0 44 2 0 70 20 17 13 1 0 32 2 1 17 7 6 73 chain 43751 chr7 159345973 + 136598629 136599145 L1P2 5180 + 1507 2027 32283 340 0 4 176 chain 27922 chr7 159345973 + 136622968 136623275 L1PA2 6032 + 5725 6032 44996 307 chain 51246 chr7 159345973 + 136629171 136629866 LTR12 884 + 0 884 29147 25 1 0 52 1 67 40 5 10 21 0 1 67 1 0 53 1 2 38 2 0 120 0 8 34 0 1 9 0 103 97 0 8 128 chain 44286 chr7 159345973 + 136681137 136681619 L1PA3long 6157 + 4862 5344 31962 482 chain 10350 chr7 159345973 + 136687194 136687330 MER85 139 + 2 139 69700 107 1 2 28 chain 27164 chr7 159345973 + 136717213 136717510 AluYd8 298 + 0 289 46018 255 8 0 34 chain 46942 chr7 159345973 + 136752002 136752583 LTR10C 591 + 14 591 30680 20 3 1 103 3 1 452 chain 3350 chr7 159345973 + 136764715 136766109 L1PA3long 6157 + 2858 4254 13292 319 1 0 92 0 1 346 0 2 636 chain 232013 chr7 159345973 + 136796113 136798641 L1PA2 6032 + 3499 6032 8693 780 0 2 750 0 5 985 2 0 11 chain 3694 chr7 159345973 + 136803539 136803586 L1MB4 1306 + 622 670 93646 42 0 1 5 chain 2759 chr7 159345973 + 136820836 136821984 L1PA3long 6157 + 5006 6155 13292 1017 0 1 131 chain 550185 chr7 159345973 + 136831191 136837216 L1PA2 6032 + 2 6030 733 72 0 1 2115 0 2 1310 4 0 732 0 4 1792 chain 17102 chr7 159345973 + 136840203 136840434 L1PA8A 6298 + 6060 6290 59692 110 19 18 102 chain 23320 chr7 159345973 + 136959639 136959937 AluSp 311 + 9 309 51901 44 4 5 222 0 1 28 chain 32333 chr7 159345973 + 137032226 137032769 L1PA15 4387 + 3567 4118 40089 58 14 17 13 7 13 145 3 1 16 1 0 29 16 17 12 6 4 15 0 2 23 11 10 52 0 3 107 1 0 14 chain 44017 chr7 159345973 + 137040816 137041357 MER41A 554 + 0 546 32117 369 0 6 53 1 0 118 chain 31441 chr7 159345973 + 137047461 137047810 L1PA3long 6157 + 5806 6157 40778 202 0 2 147 chain 6760 chr7 159345973 + 137072864 137073257 MLT1B 390 + 67 367 78443 29 294 201 70 chain 418677 chr7 159345973 + 137103161 137108325 L1PA7 6471 + 54 6465 4900 29 0 4 140 22 35 353 8 9 47 0 47 518 0 1 156 0 3 268 3 12 58 12 15 4 1 0 115 0 1 25 0 3 263 0 5 45 0 1162 106 0 1 132 0 1 220 17 0 371 0 11 735 1 0 264 0 1 459 0 1 24 0 1 471 0 1 288 3 0 6 chain 5295 chr7 159345973 + 137119707 137119767 L1P1 4361 + 3348 3408 84221 60 chain 310822 chr7 159345973 + 137136346 137139788 L1PA3long 6157 + 2720 6157 6593 727 0 3 904 0 4 1478 1 0 168 8 0 148 3 0 5 chain 28403 chr7 159345973 + 137166877 137167178 AluYa5 310 + 0 300 44265 132 1 0 168 chain 33296 chr7 159345973 + 137177467 137177868 L1PA8A 6298 + 5879 6281 39266 373 0 1 28 chain 50158 chr7 159345973 + 137178548 137179426 L1MA2 4263 + 3314 4114 29503 121 17 19 73 4 0 21 36 19 17 9 3 72 12 11 13 43 0 126 11 8 9 0 3 113 14 15 9 1 0 92 7 0 47 1 0 4 1 0 5 chain 501248 chr7 159345973 + 137181610 137187197 L1PA3long 6157 + 0 5719 3089 152 0 1 614 11 139 334 0 1 1489 1 0 2453 2 1 120 0 4 233 0 1 71 1 0 106 chain 78916 chr7 159345973 + 137205563 137206459 MER11D 897 + 0 897 21894 287 2 1 20 11 13 576 chain 116473 chr7 159345973 + 137211037 137212321 L1PA4 6152 + 3641 4926 16137 308 0 1 976 chain 19544 chr7 159345973 + 137256831 137257075 L1PA8A 6298 + 5496 5746 56966 30 0 1 14 0 3 22 0 2 178 chain 2916 chr7 159345973 + 137288648 137288680 U2 167 + 0 32 100695 32 chain 141855 chr7 159345973 + 137333658 137335203 L1PA3long 6157 + 4612 6157 12951 1545 chain 556933 chr7 159345973 + 137424404 137430564 L1PA3long 6157 + 5 6157 300 642 1 0 67 8 1 5442 chain 27830 chr7 159345973 + 137640951 137641320 THE1B 368 + 0 368 45137 172 2 1 169 3 0 5 1 4 17 chain 39293 chr7 159345973 + 137752420 137752880 LTR2 463 + 0 463 35154 129 0 3 331 chain 81820 chr7 159345973 + 137769437 137770443 L1PA8 5853 + 4805 5815 21277 108 1 2 169 0 2 438 0 7 33 1 0 44 2 0 69 1 0 16 1 0 8 0 1 38 2 1 19 1 0 55 chain 10967 chr7 159345973 + 137881293 137881491 Tigger4a 237 + 21 237 68600 32 1 0 4 13 14 25 7 14 66 5 16 45 chain 21701 chr7 159345973 + 137906617 137906984 THE1B 368 + 0 368 54221 15 2 0 21 4 9 45 62 63 19 4 2 119 1 0 75 chain 48980 chr7 159345973 + 137926034 137926645 L1PA8 5853 + 5147 5777 29961 417 1 0 34 9 10 71 1 0 11 1 0 43 1 23 4 1 0 17 chain 11000 chr7 159345973 + 137955757 137955891 MER85 139 + 5 139 68558 134 chain 2956 chr7 159345973 + 137971884 137971915 MER41A 554 + 399 430 100315 31 chain 15963 chr7 159345973 + 138038246 138038560 MER4-int 2692 + 656 970 61074 9 4 0 52 13 15 76 0 1 34 55 57 18 0 1 20 2 0 31 chain 313701 chr7 159345973 + 138038618 138042216 L1PA6 6164 + 2563 6162 6543 2751 0 1 6 1 2 156 1 2 273 0 1 399 3 0 8 chain 121141 chr7 159345973 + 138145981 138147428 LTR12C 1709 + 0 1698 15327 92 1 0 246 0 43 310 0 159 221 0 47 106 0 4 385 13 12 73 chain 23943 chr7 159345973 + 138155383 138155634 AluYa5 310 + 54 305 50873 251 chain 5785 chr7 159345973 + 138175061 138175129 HY3 101 + 27 95 81992 68 chain 113208 chr7 159345973 + 138219938 138221396 THE1B-int 1605 + 114 1605 16649 318 4 29 522 1 2 107 14 13 341 2 10 149 chain 454675 chr7 159345973 + 138249436 138255375 HERVL-int 5654 + 0 5654 4269 153 0 11 46 3 0 445 2 0 284 2 1 36 0 8 472 1 0 239 0 7 22 0 2 68 43 6 36 324 0 26 8 12 152 5 4 447 0 1 156 2 3 120 0 10 309 0 5 728 1 2 624 2 6 395 8 14 52 0 23 217 2 0 60 0 1 23 0 1 52 0 1 374 chain 86250 chr7 159345973 + 138273006 138274580 L1PB1 5432 + 4220 5430 20367 150 8 0 87 299 0 48 1 4 117 3 0 474 11 0 16 13 0 18 1 0 12 1 0 11 5 1 9 2 0 53 2 1 16 1 0 44 1 0 15 1 0 5 18 7 19 17 14 5 2 0 26 1 0 19 1 0 13 1 0 16 2 0 10 chain 13599 chr7 159345973 + 138294895 138295178 THE1C 375 + 0 298 64165 78 44 46 60 0 3 6 49 59 46 chain 158335 chr7 159345973 + 138317504 138320873 L1PA8 5853 + 3795 5849 11854 299 1 0 107 1 5 164 1 0 139 0 1 314 1317 0 178 5 7 73 0 2 232 0 1 161 18 18 68 1 0 46 2 0 68 2 1 61 2 1 19 1 0 89 chain 116041 chr7 159345973 + 138318543 138319841 L1PA4 6152 + 4839 6138 16228 978 0 1 80 1 0 167 0 1 72 chain 1253 chr7 159345973 + 138329047 138329254 Tigger2 2703 + 550 758 37610 175 1 2 31 chain 28540 chr7 159345973 + 138329254 138329685 LTR7B 505 + 0 505 44052 108 0 10 66 35 11 17 0 88 62 1 0 79 14 13 40 0 2 9 chain 200922 chr7 159345973 + 138330208 138332896 HERVH-int 3825 + 769 3819 9690 11 2 0 7 3 8 194 43 40 45 0 1 96 1 4 48 15 0 72 1 3 132 9 0 87 0 1 436 0 4 128 4 9 313 0 1 5 5 4 401 0 367 167 17 18 312 1 3 133 chain 30576 chr7 159345973 + 138334099 138334517 LTR7B 505 + 0 491 41496 108 0 10 57 0 38 12 3 27 28 0 2 41 0 1 41 1 0 76 14 13 37 chain 2210 chr7 159345973 + 138334577 138334942 Tigger2 2703 + 800 1166 37610 22 1 0 18 0 1 217 0 1 107 chain 28955 chr7 159345973 + 138339213 138339537 LTR14A 344 + 16 344 43399 252 0 4 72 chain 130455 chr7 159345973 + 138339748 138341421 HERVK14-int 1672 + 9 1658 13985 21 1 0 11 1 0 49 1 0 156 6 0 59 1 0 29 2 0 232 2 1 46 1 0 206 1 0 163 1 0 79 1 0 3 1 0 9 4 2 30 1 0 203 1 0 76 1 0 4 7 8 20 1 0 62 10 9 23 2 0 9 1 0 101 0 3 35 chain 29237 chr7 159345973 + 138345519 138345859 LTR14A 344 + 0 344 42988 268 0 4 72 chain 7197 chr7 159345973 + 138359513 138359595 MER41B 635 + 463 545 76951 82 chain 8929 chr7 159345973 + 138364707 138364843 HERVH-int 3825 + 1730 1865 72722 57 14 13 65 chain 70374 chr7 159345973 + 138364844 138365742 HERVH-int 3825 + 1867 2796 23896 219 4 9 313 0 1 5 5 4 130 7 32 149 0 1 66 chain 78729 chr7 159345973 + 138365754 138366773 HERVH-int 3825 + 2797 3825 21933 65 2 0 154 14 14 56 0 3 25 0 8 124 2 1 179 13 10 9 1 4 334 0 1 41 chain 28538 chr7 159345973 + 138367866 138368285 LTR7B 505 + 0 491 44056 108 0 10 66 35 11 17 0 88 62 1 0 79 14 13 37 chain 10414 chr7 159345973 + 138391986 138392115 AluSc 308 + 10 145 69582 20 0 6 109 chain 18849 chr7 159345973 + 138392549 138392974 L1MA6 2487 + 2045 2400 57716 19 8 5 156 27 12 40 111 62 40 3 0 21 chain 41052 chr7 159345973 + 138403164 138403688 LTR10F 562 + 0 562 33932 181 1 4 43 5 8 7 0 34 198 2 0 87 chain 6190 chr7 159345973 + 138415479 138415568 HY4 93 + 0 90 80386 61 6 7 22 chain 3060 chr7 159345973 + 138545760 138545827 L1MC4 1079 + 157 225 99216 32 22 23 13 chain 55258 chr7 159345973 + 138611806 138612415 SVA_F 1814 + 320 1814 27790 71 0 885 538 chain 18848 chr7 159345973 + 138634986 138635285 AluSp 311 + 0 297 57717 46 0 2 5 10 4 68 38 38 112 0 2 20 chain 14724 chr7 159345973 + 138640576 138640815 L1PA16 3655 + 3402 3619 62636 176 3 0 15 29 10 16 chain 23513 chr7 159345973 + 138643938 138644226 AluSc 308 + 17 308 51567 114 0 1 142 1 3 31 chain 5147 chr7 159345973 + 138654433 138654495 Tigger1 2417 + 1195 1257 84923 62 chain 55847 chr7 159345973 + 138677318 138678415 MER4E1 777 + 0 777 27612 104 0 1 27 4 10 20 0 3 6 6 4 252 328 0 106 34 19 78 11 26 121 chain 6900 chr7 159345973 + 138766867 138766954 Charlie1 1172 + 740 827 77957 87 chain 8447 chr7 159345973 + 138778380 138778519 Tigger4b 360 + 224 349 73805 47 14 0 35 1 0 22 2 3 18 chain 21764 chr7 159345973 + 138788619 138788962 THE1B 368 + 2 349 54149 167 1 0 21 7 10 9 1 5 16 1 0 10 1 0 66 1 0 4 20 21 18 chain 37940 chr7 159345973 + 138826208 138826713 Tigger1 2417 + 967 1477 36112 18 0 1 15 0 1 37 6 0 57 0 1 142 0 1 152 3 6 63 0 4 12 chain 3741 chr7 159345973 + 138885657 138885714 MER4D 903 + 828 885 93322 18 1 2 23 1 0 14 chain 13824 chr7 159345973 + 138906526 138906791 L1PB1 5432 + 5175 5420 63840 45 2 1 16 1 0 44 1 0 15 1 0 4 15 7 20 8 5 14 2 0 23 1 0 22 7 6 7 1 0 16 chain 3366 chr7 159345973 + 139001081 139001120 L1MC4 1079 + 159 198 96414 39 chain 43823 chr7 159345973 + 139001187 139001738 MER41A 554 + 0 554 32237 284 0 4 16 2 0 134 5 1 29 1 6 80 chain 173541 chr7 159345973 + 139003217 139005729 MER41-int 2638 + 112 2632 10921 42 108 106 30 62 57 7 0 1 96 4 0 10 2 0 147 0 1 38 1 0 5 16 5 21 1 0 121 9 24 129 0 2 92 29 30 222 0 2 26 0 1 19 0 1 9 1 0 159 0 2 251 1 0 108 2 0 35 4 2 13 10 14 25 0 1 358 0 9 299 chain 43889 chr7 159345973 + 139005756 139007206 MER41A 554 + 13 551 32197 177 916 0 218 0 4 139 chain 17464 chr7 159345973 + 139006063 139006286 MER41A 554 + 319 541 59282 78 2 0 56 0 1 87 chain 4890 chr7 159345973 + 139006288 139006342 MER41-int 2638 + 2582 2636 86206 54 chain 13758 chr7 159345973 + 139006682 139006845 MER41A 554 + 22 185 63938 163 chain 51666 chr7 159345973 + 139011607 139013431 MER4E1 777 + 0 771 28972 13 18 19 59 372 0 240 0 1 14 56 1 67 307 2 122 35 23 19 326 0 48 13 28 115 chain 29349 chr7 159345973 + 139093418 139093812 LTR7 482 + 0 477 42809 101 15 14 17 0 51 41 5 37 46 0 1 169 chain 105964 chr7 159345973 + 139100800 139102019 SVA_C 1631 + 1 1626 17570 17 11 3 13 3 1 589 0 413 196 0 3 390 chain 170602 chr7 159345973 + 139128912 139130832 L1PA5 6144 + 4250 6144 11078 91 0 4 1032 1 0 552 29 0 215 chain 5125 chr7 159345973 + 139159659 139159804 Charlie1b 519 + 223 366 85043 31 1 0 34 55 56 12 2 0 10 chain 20565 chr7 159345973 + 139174458 139176307 L1MA3 4352 + 3167 4306 55688 74 2 1 59 0 1 14 0 8 22 1489 781 40 7 5 63 4 0 23 2 0 20 6 5 5 1 0 18 chain 48718 chr7 159345973 + 139193718 139194539 L1PB1 5432 + 4649 5400 30043 56 0 2 194 0 3 199 59 11 20 1 0 9 21 16 8 2 0 52 1 0 18 3 1 4 0 1 21 1 0 16 1 0 16 3 0 6 57 47 21 1 0 21 1 0 9 chain 134828 chr7 159345973 + 139205567 139207454 L1MA3 4352 + 1460 3363 13553 68 1 0 125 4 0 6 0 3 120 0 1 197 26 27 36 2 0 5 16 15 79 2 3 168 1 0 39 2 0 17 16 44 104 6 1 66 3 0 152 9 10 495 2 1 59 0 1 61 chain 139468 chr7 159345973 + 139224891 139226979 SVA_A 1864 + 21 1864 13143 20 0 6 374 0 76 40 0 76 153 0 37 34 3 0 49 1 0 23 4 1 90 362 2 133 2 0 8 1 0 19 71 1 701 chain 6066 chr7 159345973 + 139340699 139340763 tRNA-Arg-AGG 67 + 0 64 80853 64 chain 11616 chr7 159345973 + 139452318 139452451 L1PA7 6471 + 6328 6461 67541 133 chain 227195 chr7 159345973 + 139461863 139465134 HERVH-int 3825 + 0 3825 8837 21 6 10 37 0 16 197 0 2 33 29 28 20 1 2 103 1 0 4 0 5 11 2 1 28 13 12 15 24 32 11 8 0 9 3 152 7 0 3 19 1 0 444 3 0 5 0 3 5 22 7 133 0 1 35 0 10 10 9 0 78 0 1 35 5 1 235 56 41 264 4 9 15 5 3 186 1 2 284 1 9 225 0 367 57 18 17 66 3 1 5 0 2 19 9 9 64 23 23 5 0 1 4 1 0 214 11 43 109 chain 79643 chr7 159345973 + 139467404 139468373 LTR5_Hs 974 + 0 974 21710 285 0 1 132 1 0 401 15 22 30 2 0 103 chain 20518 chr7 159345973 + 139468378 139468646 LTR7 482 + 164 475 55759 48 10 52 41 0 1 169 chain 10053 chr7 159345973 + 139501036 139501496 L1PA16 3655 + 3427 3578 70297 66 4 0 10 312 7 68 chain 24964 chr7 159345973 + 139502971 139503266 AluSg7 307 + 9 307 49345 29 0 2 86 0 1 180 chain 6727 chr7 159345973 + 139504798 139504902 MER20 218 + 59 161 78553 23 11 9 70 chain 28898 chr7 159345973 + 139522415 139522720 AluYa5 310 + 0 304 43482 132 1 0 172 chain 118209 chr7 159345973 + 139553501 139555061 THE1B-int 1605 + 0 1605 15847 103 0 1 326 1 26 219 0 3 10 4 9 65 32 33 52 9 10 94 1 4 8 8 0 287 0 13 272 6 5 8 0 1 43 0 1 12 chain 25297 chr7 159345973 + 139555061 139555432 THE1B 368 + 0 356 48788 13 2 0 22 5 10 127 3 2 141 19 2 39 chain 73668 chr7 159345973 + 139685462 139686400 Tigger1 2417 + 965 1907 23180 334 1 0 73 0 3 8 0 1 360 0 1 162 chain 27693 chr7 159345973 + 139686400 139686772 THE1C 375 + 0 375 45326 130 5 9 41 7 6 189 chain 29948 chr7 159345973 + 139732861 139733285 MSTA 426 + 0 426 42100 37 0 5 61 0 1 25 4 3 14 23 22 40 2 0 218 chain 5246 chr7 159345973 + 139743898 139744072 L1MB7 1623 + 995 1179 84469 42 1 0 4 92 103 35 chain 3992 chr7 159345973 + 139780029 139780108 MIRb 242 + 33 113 91503 35 22 23 22 chain 5473 chr7 159345973 + 139780305 139780392 MER3 215 + 90 209 83339 51 10 42 26 chain 7671 chr7 159345973 + 139816564 139816671 MER5A 189 + 5 113 75701 19 1 2 87 chain 357783 chr7 159345973 + 139832230 139837804 L1PB1 5432 + 569 5424 5823 43 2 1 4 0 1 63 0 5 76 0 1 501 0 1 128 53 27 181 0 5 45 10 5 60 316 0 105 1 2 367 3 0 303 13 3 5 0 2 290 0 1 48 1 0 30 0 1 177 331 16 148 6 12 384 1 3 110 51 12 24 8 7 4 0 1 377 0 1 21 0 2 195 2 3 165 0 2 84 0 1 81 0 2 228 4 0 113 0 1 5 1 0 51 7 6 5 1 0 24 1 0 4 21 16 9 2 0 52 3 2 16 1 0 44 1 0 15 25 13 12 30 25 24 1 0 21 1 0 13 2 1 15 1 0 4 chain 4602 chr7 159345973 + 139838084 139838142 L1PB 1623 + 1135 1195 87783 53 0 2 5 chain 11595 chr7 159345973 + 139953943 139954116 MER30 238 + 37 227 67579 69 4 0 11 0 23 40 0 1 13 4 1 32 chain 18876 chr7 159345973 + 140081394 140081741 MLT2A1 477 + 116 477 57673 24 1 2 29 3 0 24 10 14 148 2 4 10 60 66 30 0 4 6 chain 127981 chr7 159345973 + 140114190 140115812 SVA_D 2077 + 57 2074 14279 484 0 40 179 3 0 132 0 396 26 0 1 20 1 4 6 0 3 7 4 5 22 0 8 11 5 0 25 47 1 17 0 2 8 5 6 103 1 0 134 1 3 366 7 0 8 chain 8717 chr7 159345973 + 140129985 140130161 Tigger4a 237 + 26 237 73176 16 16 49 16 2 9 53 0 3 8 15 7 50 chain 22640 chr7 159345973 + 140179282 140179654 MSTA 426 + 9 392 52924 170 64 74 85 6 7 47 chain 44571 chr7 159345973 + 140202927 140203441 MER9a1 513 + 0 513 31796 164 2 1 348 chain 27724 chr7 159345973 + 140234189 140234482 AluYd8 298 + 0 293 45285 293 chain 32571 chr7 159345973 + 140257266 140257814 L1PB1 5432 + 4904 5420 39893 199 1 2 9 3 0 20 1 0 13 1 0 11 4 0 9 2 0 53 2 1 15 1 0 41 33 21 29 2 0 5 25 22 16 1 0 21 1 0 13 1 0 16 chain 171459 chr7 159345973 + 140361576 140363700 SVA_E 1901 + 0 1892 11024 153 2 0 173 3 0 491 131 0 25 0 1 84 3 0 30 4 0 21 48 0 117 1 0 33 41 0 93 0 1 46 1 0 624 chain 7914 chr7 159345973 + 140362400 140362529 SVA_E 1901 + 818 989 38329 18 4 0 91 1 47 15 chain 2980 chr7 159345973 + 140362711 140362744 SVA_E 1901 + 821 855 84508 21 0 1 12 chain 20922 chr7 159345973 + 140374871 140375183 AluSx4 309 + 6 306 55232 190 38 30 71 4 0 9 chain 131715 chr7 159345973 + 140430959 140432404 SVA_D 2077 + 15 2077 13854 545 0 40 87 0 40 181 0 537 632 chain 57138 chr7 159345973 + 140529303 140529954 L1PA5 6144 + 5492 6144 27214 331 0 2 301 1 0 18 chain 33006 chr7 159345973 + 140565700 140566092 MER41A 554 + 38 446 39510 60 0 16 332 chain 103470 chr7 159345973 + 140664840 140666093 L1P2 5180 + 2044 3253 17886 5 0 1 157 0 2 157 0 1 39 0 1 480 4 0 217 46 1 148 chain 30077 chr7 159345973 + 140666110 140666575 HERV3-int 2824 + 1985 2433 41982 16 30 25 8 1 0 26 1 0 3 1 0 15 1 0 19 1 0 50 12 8 28 1 0 132 1 0 102 1 0 16 chain 95639 chr7 159345973 + 140742664 140743713 L1PA3long 6157 + 5088 6137 18825 1049 chain 440940 chr7 159345973 + 140760640 140766449 L1PA3long 6157 + 1243 6157 4556 467 0 1 1459 0 1 36 907 0 85 1 0 1244 0 1 8 2 1 1255 0 10 195 1 2 149 chain 27150 chr7 159345973 + 140821573 140821992 L1PA16 3655 + 3082 3560 46046 73 7 8 41 2 1 42 5 1 30 15 23 23 1 56 180 chain 16598 chr7 159345973 + 140844052 140844245 LTR10F 562 + 319 512 60272 193 chain 28075 chr7 159345973 + 140863538 140863934 MSTA 426 + 0 407 44757 31 0 1 114 5 8 52 5 8 11 13 17 165 chain 7456 chr7 159345973 + 140902815 140902920 Tigger1 2417 + 659 1083 76231 59 1 0 4 0 320 41 chain 8127 chr7 159345973 + 140986252 140986371 MER1A 529 + 409 529 74575 45 17 18 57 chain 11780 chr7 159345973 + 141020166 141020313 L1MB2 1706 + 1422 1569 67251 147 chain 543701 chr7 159345973 + 141032606 141038609 L1PA2 6032 + 3 6032 1097 254 1 0 62 1 8 199 4 0 190 0 1 2086 0 1 477 0 19 926 0 4 313 1 0 1489 chain 4027 chr7 159345973 + 141060838 141060889 MLT1C 463 + 36 87 91259 51 chain 57317 chr7 159345973 + 141089379 141090018 L1PA5 6144 + 5503 6143 27154 493 0 1 146 chain 14145 chr7 159345973 + 141097232 141097388 AluYk4 311 + 145 304 63387 67 0 3 89 chain 19940 chr7 159345973 + 141134840 141135121 THE1B 368 + 0 283 56468 13 2 0 26 4 9 124 3 2 109 chain 3957 chr7 159345973 + 141188262 141188349 Tigger4a 237 + 2 107 91709 18 0 14 9 15 0 13 4 23 28 chain 22331 chr7 159345973 + 141254445 141254724 AluSq10 312 + 10 287 53366 200 8 5 67 0 1 4 chain 46522 chr7 159345973 + 141285563 141286097 L1PA7 6471 + 5929 6464 30834 125 0 1 81 0 1 315 1 0 12 chain 35791 chr7 159345973 + 141309901 141310407 L1PA8A 6298 + 5146 5664 37534 130 10 9 184 0 4 16 12 15 63 0 2 8 5 9 78 chain 3134 chr7 159345973 + 141376692 141376731 MADE1 96 + 55 94 98508 39 chain 7066 chr7 159345973 + 141407101 141407197 MER58A 224 + 115 216 77383 4 1 0 24 0 6 67 chain 3842 chr7 159345973 + 141407542 141407584 5S 121 + 0 42 92547 42 chain 25467 chr7 159345973 + 141496425 141496693 AluYa5 310 + 37 305 48526 268 chain 13467 chr7 159345973 + 141727983 141728148 U1 164 + 0 164 64361 45 1 0 119 chain 81218 chr7 159345973 + 141751125 141752103 LTR5_Hs 974 + 0 974 21386 156 7 0 302 0 4 449 1 0 63 chain 12762 chr7 159345973 + 141769132 141769448 MSTD 398 + 58 398 65498 74 1 30 10 11 14 16 97 90 35 6 5 66 chain 25453 chr7 159345973 + 141799748 141800096 THE1B 368 + 0 368 48551 40 0 15 14 4 14 85 1 0 24 5 2 99 1 0 75 chain 6042 chr7 159345973 + 141803556 141803628 tRNA-Gln-CAA_ 72 + 0 72 80921 72 chain 175535 chr7 159345973 + 141869912 141872024 L1PA6 6164 + 4081 6162 10801 162 1 0 551 0 12 9 43 1 375 3 1 120 0 4 426 0 2 85 1 2 220 4 0 107 1 0 4 chain 77214 chr7 159345973 + 141882916 141883742 L1HS 6032 + 4441 5267 22263 826 chain 97723 chr7 159345973 + 141898815 141899910 L1PA5 6144 + 5032 6128 18559 268 0 1 592 0 1 104 1 0 130 chain 41686 chr7 159345973 + 141950611 141951151 MLT2A2 560 + 0 560 33561 180 1 0 25 4 9 139 0 1 48 0 11 137 0 4 6 chain 79765 chr7 159345973 + 141962352 141963243 MER11D 897 + 0 888 21676 283 3 0 605 chain 5491 chr7 159345973 + 142070481 142070655 MER20 218 + 22 204 83277 56 4 0 7 1 0 4 78 91 24 chain 3856 chr7 159345973 + 142098960 142099032 MER58A 224 + 11 86 92431 16 0 1 7 14 16 35 chain 5541 chr7 159345973 + 142099100 142099274 MER20 218 + 22 204 83074 57 4 0 6 1 0 4 1 0 4 73 87 24 chain 36140 chr7 159345973 + 142203362 142203902 L1PA16 3655 + 2081 2651 37319 19 1 3 6 2 0 24 8 35 71 1 0 25 1 0 137 21 23 72 3 6 149 chain 4464 chr7 159345973 + 142209798 142209849 MER33 330 + 8 59 88531 51 chain 442717 chr7 159345973 + 142209915 142215468 L1PA7 6471 + 3 6470 4525 205 0 1 35 0 15 144 3 0 67 0 10 360 0 1 430 16 16 313 0 1 300 4 5 335 12 1 78 1 0 261 0 1 45 6 5 4 1 0 91 0 20 123 0 1 148 0 1 274 6 19 190 9 8 299 1 0 19 0 1 93 0 8 169 6 14 557 0 8 206 0 850 578 17 18 45 8 0 94 chain 3413 chr7 159345973 + 142217708 142217767 L1MA4 2864 + 2749 2806 95971 18 8 6 33 chain 20203 chr7 159345973 + 142374765 142375036 L1PA8 5853 + 5587 5853 56133 23 2 0 72 1 0 58 2 1 19 2 1 92 chain 110423 chr7 159345973 + 142410724 142412022 L1PA7 6471 + 5167 6464 17014 466 0 1 327 2 0 351 1 3 8 2 0 141 chain 28050 chr7 159345973 + 142435602 142435955 THE1A 353 + 0 353 44787 82 8 9 19 1 0 243 chain 2602 chr7 159345973 + 142445964 142445992 L1MA4 2864 + 2781 2809 102984 28 chain 27969 chr7 159345973 + 142448818 142449222 L1PA8 5853 + 5453 5853 44918 111 1 0 45 2 0 11 4 7 54 1 0 9 16 15 38 1 0 17 1 0 93 chain 17856 chr7 159345973 + 142547832 142548193 THE1D 372 + 0 372 58819 28 0 5 74 107 117 10 0 1 85 5 0 52 chain 216098 chr7 159345973 + 142570804 142573869 L1PA11 4918 + 18 4508 9148 24 2 0 38 1 0 4 4 2 29 1 0 13 3 1 51 1 0 26 0 1 6 2 0 3 1 0 265 11 21 241 0 1 89 24 28 5 3 0 121 0 1 50 1 0 16 0 1 7 1 2 113 18 17 352 6 4 178 19 21 63 1 2 54 1 2 135 0 2 45 0 1437 171 3 0 41 7 1 200 0 1 350 3 1 60 0 4 12 9 0 65 1 0 10 2 0 44 0 1 24 7 5 9 1 0 5 0 2 13 chain 108390 chr7 159345973 + 142574944 142576144 SVA_B 1603 + 41 1600 17267 632 0 358 21 0 1 547 chain 50807 chr7 159345973 + 142636030 142636628 L1PA7 6471 + 5862 6461 29280 434 1 2 163 chain 75696 chr7 159345973 + 142650396 142651360 L1PA10 4194 + 3181 4150 22655 73 1 0 4 0 1 127 0 5 9 0 2 21 0 1 692 10 7 27 chain 42973 chr7 159345973 + 142663347 142663881 HSMAR1 1287 + 747 1287 32789 430 1 0 58 0 3 14 0 4 31 chain 10509 chr7 159345973 + 142668343 142668516 MER2 342 + 142 336 69403 120 30 51 23 chain 69819 chr7 159345973 + 142673408 142674217 L1PA6 6164 + 5352 6161 24041 809 chain 3775 chr7 159345973 + 142683464 142683504 MLT1D 503 + 89 129 93027 40 chain 37772 chr7 159345973 + 142703809 142704340 MER41A 554 + 13 554 36227 245 14 0 10 0 22 66 8 9 168 6 7 14 chain 38044 chr7 159345973 + 142708435 142708938 MER41A 554 + 13 523 36039 131 2 1 4 0 1 25 0 1 261 0 3 31 10 13 39 chain 13844 chr7 159345973 + 142722779 142722949 MER75B 242 + 54 224 63804 170 chain 29398 chr7 159345973 + 142733615 142734066 L1P4a 3072 + 35 474 42741 12 1 0 21 2 0 21 13 12 146 9 0 29 1 0 152 6 10 15 1 0 13 1 0 8 chain 4350 chr7 159345973 + 142745090 142745139 L1MA5A 2387 + 2241 2290 89171 49 chain 15761 chr7 159345973 + 142827253 142827451 L1PA16 3655 + 3306 3503 61338 110 1 0 87 chain 28898 chr7 159345973 + 142893684 142893989 AluYa5 310 + 0 304 43481 132 1 0 172 chain 55035 chr7 159345973 + 142958448 142959194 MER4E1 777 + 0 777 27865 34 1 0 37 3 5 34 12 13 150 20 0 21 0 27 8 0 19 85 0 1 115 0 2 226 chain 5566 chr7 159345973 + 142975875 142976016 L1MD1 2063 + 199 340 82956 4 1 0 29 6 5 16 24 23 27 5 8 29 chain 34743 chr7 159345973 + 142993711 142994144 L1PA8 5853 + 5430 5853 38194 134 1 0 43 3 1 73 1 0 9 1 0 52 1 0 21 1 0 31 3 0 59 chain 4861 chr7 159345973 + 143023980 143024071 MSTD-int 1705 + 1591 1680 86369 40 22 20 29 chain 373630 chr7 159345973 + 143032343 143037075 L1PA8 5853 + 52 5853 5594 20 2 0 9 2 1 12 50 14 194 18 6 63 0 1 220 7 11 23 0 4 357 0 3 68 13 10 52 3 6 13 0 1 344 0 2 40 1 0 145 1 0 529 1 0 526 14 1098 289 0 1 171 1 0 49 1 0 159 31 60 456 0 2 71 3 4 478 4 3 41 2 0 70 2 1 17 1 0 48 1 0 16 2 1 92 chain 12695 chr7 159345973 + 143063399 143063538 SVA_E 1901 + 1762 1901 65628 139 chain 2840 chr7 159345973 + 143072577 143072607 L1PA4 6152 - 1569 1599 99502 30 chain 61750 chr7 159345973 + 143072607 143073286 L1PA4 6152 + 5290 5969 25928 679 chain 94978 chr7 159345973 + 143078290 143083058 L1PB1 5432 + 41 4485 6009 98 47 32 230 7 5 127 1 0 4 0 1 6 2 1 13 8 9 199 12 12 33 8 0 440 4 2 44 0 1 86 6 8 13 0 8 131 0 4 291 7 9 54 0 1 23 3 1 264 327 0 304 11 6 109 12 21 29 10 8 152 1 0 21 5 4 161 0 1 4 1 0 200 6 5 143 3 0 234 0 12 115 0 1 11 3 0 179 0 1 142 8 13 145 1 2 132 0 1 138 chain 9333 chr7 159345973 + 143083288 143083467 L1PB1 5432 + 5103 5281 71848 13 1 2 29 1 0 9 1 0 3 2 0 9 7 5 47 2 1 9 3 6 14 0 2 29 chain 105049 chr7 159345973 + 143085966 143087415 L1PB 1623 + 98 1524 17681 4 1 0 10 1 0 5 1 0 54 4 1 16 1 0 4 2 0 77 1 0 127 1 0 20 0 2 65 2 1 83 1 0 243 4 3 365 1 0 128 0 1 139 1 0 7 2 1 30 1 0 5 3 0 12 5 1 14 1 0 8 chain 540402 chr7 159345973 + 143088281 143094432 L1PA4 6152 + 8 6151 1314 178 4 0 69 1 0 205 14 8 112 1 0 453 0 1 904 0 4 357 0 1 128 0 3 524 0 1 1413 8 0 230 0 1 771 0 1 117 0 1 644 1 0 17 chain 11892 chr7 159345973 + 143094913 143095510 L1PB1 5432 + 4845 5408 6009 254 12 11 4 1 0 20 1 0 13 27 20 50 22 20 43 1 0 16 3 0 15 9 0 11 30 24 24 1 0 22 1 0 12 1 0 4 chain 27927 chr7 159345973 + 143105116 143105505 LTR7B 505 + 0 505 44990 105 0 10 56 15 81 37 1 0 22 0 41 89 15 14 19 0 1 30 chain 47277 chr7 159345973 + 143108058 143108697 HERVH-int 3825 + 3186 3825 30549 57 18 17 171 18 18 140 0 1 235 chain 25551 chr7 159345973 + 143110124 143110496 LTR7B 505 + 0 491 48400 105 0 10 56 10 24 6 1 0 18 0 55 15 1 0 22 0 41 18 0 1 70 14 13 20 0 1 16 chain 347266 chr7 159345973 + 143113360 143117444 L1PA6 6164 + 2061 6162 5945 272 0 1 189 0 2 508 0 1 142 1 2 11 0 1 100 1 0 511 0 1 379 0 1 319 0 1 141 1 0 212 3 0 292 12 16 158 0 4 506 0 1 181 0 4 145 chain 29638 chr7 159345973 + 143121736 143122478 MLT2A1 477 + 0 477 42443 154 2 1 8 1 7 16 341 23 174 0 48 46 chain 52016 chr7 159345973 + 143127242 143128009 MER4E 760 + 0 752 28872 19 21 0 35 4 19 31 2 1 46 22 25 187 1 3 80 2 1 76 23 11 75 1 0 13 0 1 129 chain 7868 chr7 159345973 + 143143152 143143247 L1PA8A 6298 + 6190 6285 75206 95 chain 34572 chr7 159345973 + 143156162 143156860 L1PB1 5432 + 4847 5422 38303 199 0 1 5 1 0 47 87 0 15 5 0 22 1 0 10 11 8 5 2 0 9 2 0 51 1 2 5 2 0 11 4 3 40 1 0 16 55 40 10 2 0 24 1 0 22 7 6 6 1 0 18 chain 33328 chr7 159345973 + 143180928 143181314 L1PA5 6144 + 5757 6144 39235 304 0 1 82 chain 3733 chr7 159345973 + 143257323 143257445 L1MA7 2200 + 2050 2164 93373 35 4 2 10 44 39 23 1 0 5 chain 13967 chr7 159345973 + 143264268 143264436 AluSp 311 + 107 274 63632 54 5 4 109 chain 7387 chr7 159345973 + 143281109 143281200 MER4A 717 + 0 91 76429 91 chain 43825 chr7 159345973 + 143412489 143413043 MER41A 554 + 0 554 32234 262 1 0 168 0 1 123 chain 23220 chr7 159345973 + 143435764 143436052 AluSc 308 + 8 300 52050 264 1 5 23 chain 49187 chr7 159345973 + 143472173 143472744 LTR14C 587 + 0 587 29870 64 6 21 50 0 1 451 chain 2953 chr7 159345973 + 143514152 143514185 L1MA5A 2387 + 2237 2270 100344 33 chain 230130 chr7 159345973 + 143584091 143587141 L1P3 4156 + 0 3063 8743 239 23 22 59 11 10 79 14 7 325 0 12 22 17 8 33 7 6 112 12 6 220 0 10 94 20 21 12 0 1 294 0 1 923 0 2 88 15 16 145 6 7 173 0 9 107 chain 3839 chr7 159345973 + 143591945 143592083 L1MD3 1191 + 989 1126 92568 11 2 0 22 0 9 9 67 59 27 chain 28275 chr7 159345973 + 143741128 143741705 L1M1 2793 + 656 1212 44448 8 0 11 27 128 104 25 14 11 50 4 2 8 1 0 59 1 0 4 0 1 23 17 16 174 1 0 33 chain 261781 chr7 159345973 + 143748950 143752764 L1P2 5180 + 565 4030 7918 176 21 0 46 21 36 156 24 0 159 12 14 27 0 1 606 15 19 36 303 0 344 0 2 140 20 1 71 0 1 782 2 1 5 0 3 17 15 0 24 0 4 56 0 1 328 0 1 408 chain 66089 chr7 159345973 + 143775453 143776502 MER11B 1079 + 0 1048 24940 283 0 1 74 0 5 93 19 18 22 24 12 15 0 1 10 8 10 32 5 11 8 5 0 99 5 12 14 1 0 10 56 48 16 5 7 16 10 11 51 0 1 168 chain 9068 chr7 159345973 + 143786847 143786952 LTR7 482 + 377 482 72400 105 chain 301104 chr7 159345973 + 143786954 143790544 HERVH-int 3825 + 0 3825 6798 169 1 0 43 0 11 309 5 0 38 1 0 10 1 0 24 1 14 13 3 0 25 1 0 42 2 1 30 1 0 50 1 0 184 2 0 266 16 1 211 0 1 239 8 35 833 2 1 570 8 218 109 9 10 135 3 8 225 chain 23449 chr7 159345973 + 143791799 143792193 LTR7 482 + 0 444 51679 115 1 0 23 56 73 10 1 2 42 1 32 8 0 1 23 8 9 106 chain 43829 chr7 159345973 + 143821444 143822017 LTR19B 566 + 0 565 32229 125 1 0 147 16 0 4 0 1 12 1 9 267 chain 10239 chr7 159345973 + 143830561 143830713 MER1A 529 + 327 487 69919 111 19 27 22 chain 37556 chr7 159345973 + 143942162 143942664 L1PREC2 3366 + 2272 2799 36366 15 6 10 153 0 19 156 1 4 123 2 0 26 0 1 20 chain 3339 chr7 159345973 + 144005427 144005466 LTR67B 553 + 488 527 96699 39 chain 136394 chr7 159345973 + 144014717 144016372 L1PA8 5853 + 4203 5853 13404 201 0 1 134 1 0 467 0 2 310 0 1 245 1 0 46 2 0 65 15 13 11 1 0 45 1 0 16 1 0 93 chain 25907 chr7 159345973 + 144040687 144040958 AluYb8 318 + 38 309 47851 271 chain 44594 chr7 159345973 + 144045086 144045588 L1PA4 6152 + 5637 6151 31788 14 3 14 431 0 1 54 chain 84067 chr7 159345973 + 144060672 144061759 MER11B 1079 + 0 1079 20791 101 1 0 149 0 1 8 3 0 301 36 35 175 0 2 2 8 0 279 1 2 19 0 1 4 chain 24694 chr7 159345973 + 144061759 144062043 THE1B-int 1605 + 1305 1594 49743 213 0 5 71 chain 140501 chr7 159345973 + 144066434 144068489 L1PB1 5432 + 3417 5413 13057 197 8 6 112 1 0 99 0 1 460 1 6 12 1 0 70 0 1 82 3 4 160 3 1 75 1 3 157 1 4 32 1 0 200 55 18 21 1 0 9 1 0 9 43 37 26 1 0 18 2 1 43 1 0 15 1 0 4 27 16 11 8 5 14 2 0 24 5 7 14 2 1 12 1 0 9 chain 76190 chr7 159345973 + 144120638 144121500 L1P1 4361 + 3459 4319 22517 692 1 0 154 1 0 14 chain 118012 chr7 159345973 + 144170436 144171971 THE1B-int 1605 + 0 1600 15883 11 5 7 118 0 1 4 6 5 282 0 26 78 0 3 359 0 1 128 0 2 143 0 1 82 0 22 128 1 2 111 4 9 52 0 2 23 chain 13338 chr7 159345973 + 144180389 144180556 MER47A 366 + 112 279 64569 167 chain 26902 chr7 159345973 + 144213638 144214057 THE1A 353 + 0 353 46404 101 78 13 28 1 0 211 chain 123775 chr7 159345973 + 144214057 144215628 THE1A-int 1579 + 0 1574 14885 438 0 2 300 16 17 209 1 2 180 9 8 418 chain 28274 chr7 159345973 + 144215633 144215987 THE1A 353 + 0 352 44450 45 1 0 66 1 0 241 chain 22070 chr7 159345973 + 144255821 144256073 L1PA2 6032 + 5782 6032 53735 237 2 0 13 chain 23049 chr7 159345973 + 144271167 144271549 THE1B 368 + 0 368 52294 64 35 18 87 1 0 23 2 0 9 5 13 14 14 12 128 chain 7500 chr7 159345973 + 144342216 144342302 HERVH-int 3825 + 3739 3825 76132 86 chain 44371 chr7 159345973 + 144342692 144343173 LTR7 482 + 0 482 31904 224 0 1 257 chain 3102 chr7 159345973 + 144347543 144347576 L1M3b 1512 + 742 775 98773 33 chain 3293 chr7 159345973 + 144436194 144436229 MER3 215 + 6 41 97071 35 chain 21985 chr7 159345973 + 144445396 144445655 AluSc8 310 + 40 302 53861 91 1 4 167 chain 160882 chr7 159345973 + 144536292 144538057 L1PA3long 6157 + 4385 6157 11688 1627 0 7 138 chain 27527 chr7 159345973 + 144538067 144538622 L1PREC2 3366 + 2521 3039 45555 223 11 8 46 13 17 9 1 0 4 0 1 21 1 0 4 3 0 13 55 42 13 2 0 30 3 0 8 25 11 35 14 12 21 chain 374881 chr7 159345973 + 144614183 144618641 L1PA5 6144 + 0 6144 5571 265 1 2 89 6 29 44 14 4 319 15 17 392 18 9 172 0 1675 147 1 0 15 0 1 505 2 0 1609 1 0 10 0 1 332 0 6 501 chain 117524 chr7 159345973 + 144650307 144652002 LTR12C 1709 + 69 1709 15969 391 32 27 30 14 15 278 0 40 172 41 0 50 0 47 40 41 0 56 44 13 240 23 0 72 1 0 85 1 0 84 chain 1874 chr7 159345973 + 144651240 144651265 LTR12C 1709 + 837 862 40221 25 chain 3074 chr7 159345973 + 144651355 144651396 LTR12C 1709 + 952 993 40221 41 chain 11860 chr7 159345973 + 144663950 144664096 L1PA11 4918 + 4215 4356 67095 110 5 0 31 chain 31597 chr7 159345973 + 144690822 144691337 L1PA15 4387 + 3868 4366 40671 22 2 0 9 3 9 24 1 0 83 1 0 89 1 0 27 1 0 54 1 0 18 22 17 47 9 6 41 3 1 12 10 5 25 1 0 9 chain 51760 chr7 159345973 + 144693456 144694017 L1PA2 6032 + 3666 4227 28950 561 chain 88040 chr7 159345973 + 144726732 144727724 LTR13 1007 + 10 1007 20040 186 7 10 719 0 2 80 chain 222422 chr7 159345973 + 144798297 144801669 L1PA10 4194 + 950 4083 8970 167 0 1 314 4 3 249 3 53 20 29 29 84 0 3 90 0 6 147 0 1 101 4 8 175 1 0 215 1 2 16 312 7 28 2 0 6 18 8 16 0 4 41 14 7 210 39 39 129 1 0 250 6 7 15 1 0 221 14 15 13 0 4 130 9 21 213 0 1 64 chain 7530 chr7 159345973 + 144827936 144828022 LTR12C 1709 + 1293 1379 76050 86 chain 84467 chr7 159345973 + 144918716 144919702 L1PA5 6144 + 4330 5339 20719 14 0 8 118 6 8 44 5 9 611 0 5 150 0 4 38 chain 78239 chr7 159345973 + 144992578 144993441 L1PA3long 6157 + 5294 6155 22042 6 1 0 598 1 0 257 chain 18956 chr7 159345973 + 145004053 145004371 THE1D 372 + 0 332 57589 47 3 0 20 18 19 16 1 0 64 20 19 6 0 2 26 4 20 93 chain 25899 chr7 159345973 + 145075939 145076290 THE1A 353 + 0 353 47870 109 2 1 19 8 12 62 1 0 150 chain 5366 chr7 159345973 + 145165832 145165911 L1PA8 5853 + 5696 5773 83871 44 2 1 19 1 0 13 chain 30761 chr7 159345973 + 145239946 145240318 L1HS 6032 + 1030 1406 41341 26 6 9 55 0 1 285 chain 4903 chr7 159345973 + 145267446 145267507 MLT1A1-int 1737 + 1021 1082 86141 61 chain 7958 chr7 159345973 + 145267646 145267758 MLT1A1 405 + 295 405 74983 40 1 0 58 2 1 11 chain 37607 chr7 159345973 + 145305500 145305905 L1PA3long 6157 + 5003 5408 36332 405 chain 95318 chr7 159345973 + 145335794 145337004 L1PA7 6471 + 5228 6455 18864 319 0 1 74 0 2 115 8 39 155 1 2 422 18 0 98 chain 252729 chr7 159345973 + 145341108 145343878 L1PA3long 6157 + 3382 6153 8161 267 0 1 2503 chain 40665 chr7 159345973 + 145353533 145353995 L1PA5 6144 + 5677 6139 34176 462 chain 14781 chr7 159345973 + 145366135 145366291 L1HS 6032 + 5876 6032 62555 156 chain 275556 chr7 159345973 + 145561496 145564595 L1HS 6032 + 593 3697 7566 1714 0 3 833 0 2 552 chain 23694 chr7 159345973 + 145574123 145574412 AluSc 308 + 11 303 51283 12 0 5 103 2 0 172 chain 38773 chr7 159345973 + 145585066 145585581 LTR12 884 + 0 626 35513 25 1 0 52 25 0 42 0 25 120 0 113 190 1 0 59 chain 88343 chr7 159345973 + 145606306 145607357 MER11C 1089 + 0 1063 19978 249 0 1 63 0 4 373 0 4 5 1 0 38 0 1 127 0 1 122 0 1 62 0 1 11 chain 138202 chr7 159345973 + 145613613 145615161 L1PA5 6144 + 4593 6144 13249 563 0 3 985 chain 5634 chr7 159345973 + 145615689 145615759 L1MB8 1703 + 1486 1556 82631 70 chain 31464 chr7 159345973 + 145650239 145650611 L1PA7 6471 + 6099 6470 40765 38 1 0 333 chain 26404 chr7 159345973 + 145655045 145655323 AluYg6 310 + 31 309 47114 278 chain 465886 chr7 159345973 + 145659091 145664684 L1PA5 6144 + 1 6132 3966 88 0 525 253 0 1 301 9 0 672 0 1 23 0 89 41 0 1 317 11 8 120 0 6 518 0 1 198 1 0 11 83 0 506 0 1 619 0 1 10 1 0 32 1 5 282 0 3 1318 21 23 157 chain 41671 chr7 159345973 + 145677668 145678220 MER41A 554 + 0 554 33577 136 0 1 117 10 9 95 0 3 163 1 0 30 chain 28002 chr7 159345973 + 145688634 145689187 MER61-int 3695 + 9 504 44861 19 13 1 5 2 0 12 1 0 147 39 0 21 1 2 44 7 21 45 13 6 28 17 18 25 32 18 51 0 1 31 chain 5577 chr7 159345973 + 145699382 145699456 MADE1 96 + 6 96 82905 23 0 16 51 chain 114844 chr7 159345973 + 145792308 145793592 L1PA3long 6157 + 4860 6147 16404 7 0 1 356 0 1 8 6 5 533 0 1 51 0 1 323 chain 7834 chr7 159345973 + 145814666 145814757 L1PA8 5853 + 5762 5853 75285 91 chain 7391 chr7 159345973 + 145837748 145837835 L1PA3long 6157 + 5865 5952 76418 87 chain 18699 chr7 159345973 + 145837844 145838049 L1PA3long 6157 + 5952 6157 57899 205 chain 45410 chr7 159345973 + 145855022 145855535 MER9a1 513 + 0 513 31358 513 chain 498617 chr7 159345973 + 145966592 145972702 L1PA6 6164 + 0 6162 3174 203 0 1 93 0 1 72 26 33 97 11 10 153 2 1 124 0 17 103 0 19 148 7 8 155 5 6 179 8 13 10 1 0 324 7 8 1201 8 0 180 0 1 29 0 1 339 0 1 161 3 0 11 0 1 661 1 3 311 0 1 83 5 6 545 1 5 682 8 0 8 5 13 13 0 1 127 chain 95622 chr7 159345973 + 145977507 145978637 L1PA7 6471 + 5337 6469 18830 284 0 3 76 2 3 503 2 0 263 chain 45717 chr7 159345973 + 146041505 146042017 L1PA3long 6157 + 5637 6149 31203 512 chain 102130 chr7 159345973 + 146045387 146046558 L1PA4 6152 + 4704 5879 18048 302 5 7 288 0 1 38 0 1 538 chain 35267 chr7 159345973 + 146123824 146124259 L1PA7 6471 + 6035 6469 37851 114 0 1 308 2 0 11 chain 19313 chr7 159345973 + 146148967 146149192 L1PA5 6144 + 5920 6141 57226 215 4 0 6 chain 487794 chr7 159345973 + 146157281 146163166 L1PA5 6144 + 0 6143 3474 120 38 64 625 17 0 9 2 19 332 9 0 383 3 5 275 0 1 558 0 1 352 4 52 442 12 0 64 2 5 572 6 8 321 0 189 260 0 1 612 0 6 404 6 6 295 0 2 5 3 0 6 5 6 143 chain 4223 chr7 159345973 + 146218721 146218776 MER3 215 + 136 197 89983 33 0 6 22 chain 257577 chr7 159345973 + 146305654 146308716 L1PA5 6144 + 2888 5873 8042 619 1 2 335 86 0 61 0 1 65 4 5 304 0 2 753 0 3 233 1 2 21 1 0 536 0 1 42 chain 4032 chr7 159345973 + 146311728 146311773 HY3 101 + 9 54 91223 45 chain 84486 chr7 159345973 + 146350256 146351189 L1PA4 6152 + 5218 6151 20714 933 chain 25352 chr7 159345973 + 146403877 146404142 AluYa5 310 + 34 299 48703 265 chain 5108 chr7 159345973 + 146408461 146408516 L1PA5 6144 + 5823 5878 85119 55 chain 23713 chr7 159345973 + 146408517 146408782 L1PA5 6144 + 5878 6143 51256 265 chain 56696 chr7 159345973 + 146530112 146531039 L1PA15 4387 + 3403 4313 27363 288 30 31 91 11 9 45 40 41 25 1 0 170 4 3 25 11 10 44 1 0 21 4 0 6 9 8 47 6 3 25 5 0 18 chain 3591 chr7 159345973 + 146542925 146543065 L1MA8 2339 + 2119 2254 94505 36 85 80 19 chain 39410 chr7 159345973 + 146589283 146589754 L1PA7 6471 + 5994 6466 35070 318 3 4 150 chain 153131 chr7 159345973 + 146603423 146605083 L1PA2 6032 + 4368 6028 12172 1660 chain 38971 chr7 159345973 + 146644615 146645047 L1PA3long 6157 + 3278 3710 35378 432 chain 64246 chr7 159345973 + 146649856 146650691 L1PA7 6471 + 5653 6461 25362 202 31 0 15 10 9 173 0 1 84 1 2 187 0 2 63 6 7 63 chain 29278 chr7 159345973 + 146812048 146812421 THE1C-int 1605 + 2 429 42926 108 0 54 265 chain 85008 chr7 159345973 + 146821528 146822482 L1PA4 6152 + 5197 6152 20616 620 0 1 334 chain 17972 chr7 159345973 + 146890866 146891161 L1PA16 3655 + 3219 3506 58683 67 17 15 8 0 1 74 15 9 23 18 17 73 chain 553403 chr7 159345973 + 146905787 146911817 L1PA2 6032 + 3 6030 524 36 1 0 45 5 6 70 5 0 136 0 1 1063 0 2 1701 1 0 2967 chain 557263 chr7 159345973 + 146928453 146934602 L1PA3long 6157 + 6 6157 286 1686 0 1 414 0 3 1681 0 1 1515 2 0 703 7 0 127 0 6 14 chain 70137 chr7 159345973 + 146951940 146952782 L1PA7 6471 + 3966 4813 23966 36 0 3 93 0 1 373 0 1 340 chain 121985 chr7 159345973 + 146969706 146971066 L1PA3long 6157 + 4642 6002 15193 1360 chain 12207 chr7 159345973 + 146971070 146971207 L1PA3long 6157 + 6010 6147 66462 137 chain 3475 chr7 159345973 + 146979923 146979998 MADE1 96 + 0 94 95411 16 15 33 16 1 2 27 chain 11032 chr7 159345973 + 147039824 147040010 L1PA14 3548 + 3277 3454 68511 55 1 0 11 5 1 33 6 5 8 1 0 6 1 0 17 1 0 41 chain 38480 chr7 159345973 + 147165862 147166530 L1PB1 5432 + 4798 5422 35729 300 94 72 50 2 1 16 1 0 44 1 0 15 3 0 15 9 0 16 7 4 15 2 0 24 1 0 21 1 0 7 0 1 5 1 0 18 chain 23118 chr7 159345973 + 147202561 147202846 L1PA6 6164 + 5766 6054 52182 49 0 5 12 2 0 222 chain 24560 chr7 159345973 + 147318491 147318830 L1PA8 5853 + 5500 5853 49923 64 0 19 21 5 4 70 2 1 12 1 0 49 2 1 18 2 1 93 chain 21664 chr7 159345973 + 147341181 147341444 L1PA7 6471 + 6203 6466 54273 263 chain 76167 chr7 159345973 + 147355183 147356120 L1P3 4156 + 3196 4137 22520 389 0 3 15 0 1 210 0 3 290 2 0 7 2 1 22 chain 4076 chr7 159345973 + 147378061 147378108 MADE1 96 + 49 96 90915 47 chain 20096 chr7 159345973 + 147383515 147383785 L1PA8 5853 + 5588 5853 56262 22 3 1 68 1 0 13 0 1 18 1 0 29 2 1 19 1 0 93 chain 20338 chr7 159345973 + 147459888 147460134 L1PA7 6471 + 6206 6452 55964 107 3 0 5 0 3 131 chain 6622 chr7 159345973 + 147501635 147501716 MER47A 366 + 187 268 78893 81 chain 27727 chr7 159345973 + 147598676 147599006 THE1C 375 + 0 332 45281 186 0 1 131 0 1 13 chain 94083 chr7 159345973 + 147603362 147604386 L1PA3long 6157 + 4286 5309 19030 745 1 0 278 chain 116210 chr7 159345973 + 147623150 147624970 L1MA2 4263 + 2313 4113 16186 14 1 2 83 1 0 227 10 7 60 0 1 64 37 36 104 15 4 134 1 2 81 0 1 32 0 2 101 0 5 161 5 1 12 0 5 87 3 0 17 2 1 15 37 34 41 19 18 18 0 1 125 4 1 23 30 33 71 21 20 9 1 0 92 7 0 16 0 1 30 1 0 8 chain 50587 chr7 159345973 + 147628414 147634241 L1PB2 3958 + 25 3838 29354 27 1 0 4 18 14 14 5 0 16 0 8 31 7 5 28 8 0 8 1 0 44 9 6 195 10 9 17 1 0 9 13 0 167 2 1 59 4803 2824 34 1 0 11 4 7 49 6 5 62 1 0 76 23 20 63 chain 8274 chr7 159345973 + 147633431 147633547 THE1C-int 1605 + 1481 1598 74229 51 7 8 58 chain 27731 chr7 159345973 + 147657974 147658275 AluYa5 310 + 0 300 45274 123 1 0 177 chain 29590 chr7 159345973 + 147699268 147699602 L1PA7 6471 + 6128 6462 42494 334 chain 4815 chr7 159345973 + 147709351 147709411 ERV3-16A3_LTR 481 + 416 476 86625 60 chain 66958 chr7 159345973 + 147712128 147712903 L1PA5 6144 + 5367 6143 24713 16 1 0 422 0 1 28 1 2 307 chain 14894 chr7 159345973 + 147726728 147726926 MER75B 242 + 42 242 62394 67 0 3 71 5 4 55 chain 155753 chr7 159345973 + 147850167 147851912 L1PA5 6144 + 4383 6136 12018 350 5 0 560 0 1 517 0 11 21 0 1 292 chain 11830 chr7 159345973 + 147859972 147860114 THE1D 372 + 3 145 67152 142 chain 6755 chr7 159345973 + 147923858 147923942 MLT1C 463 + 345 429 78460 84 chain 15038 chr7 159345973 + 147951709 147951935 L1PA8 5853 + 5632 5853 62216 38 11 9 14 5 4 43 2 1 19 1 0 93 chain 30237 chr7 159345973 + 148081264 148081692 MLT2A1 477 + 0 473 41815 170 4 1 24 3 2 103 0 1 43 1 11 40 6 44 34 chain 13292 chr7 159345973 + 148156929 148157223 MER51B 395 + 0 221 64638 33 18 6 48 26 2 15 51 15 66 1 0 36 chain 61166 chr7 159345973 + 148168043 148168712 L1PA4 6152 + 5472 6141 26067 669 chain 25295 chr7 159345973 + 148207821 148208104 AluYc3 301 + 6 287 48792 107 2 0 174 chain 20761 chr7 159345973 + 148233827 148234138 MSTA 426 + 73 426 55419 35 16 40 88 6 4 56 1 21 109 chain 22500 chr7 159345973 + 148284169 148284522 THE1B 368 + 7 368 53121 101 7 9 59 0 2 7 16 8 8 0 1 8 0 4 14 7 15 63 5 4 58 chain 21456 chr7 159345973 + 148302502 148303140 THE1D 372 + 0 372 54575 67 0 1 98 51 80 87 297 1 38 chain 26361 chr7 159345973 + 148357060 148357421 THE1B 368 + 0 368 47178 128 0 3 38 1 0 29 0 3 8 1 5 15 6 5 8 1 0 126 chain 123471 chr7 159345973 + 148363635 148365114 LTR12C 1709 + 0 1709 14943 212 0 9 88 0 1 4 1 0 336 0 119 58 11 10 274 1 0 5 3 1 107 0 4 168 0 102 211 chain 22998 chr7 159345973 + 148375741 148376022 AluSg7 307 + 29 303 52364 97 7 0 177 chain 26521 chr7 159345973 + 148387795 148388143 MER41A 554 + 0 436 46947 72 0 89 34 0 1 112 8 6 122 chain 27495 chr7 159345973 + 148389203 148389540 THE1B 368 + 16 368 45588 28 0 15 60 0 1 49 1 0 199 chain 28173 chr7 159345973 + 148409770 148410068 AluYk11 308 + 1 299 44602 298 chain 108562 chr7 159345973 + 148426227 148427553 LTR12C 1709 + 0 1709 17241 260 1 2 388 0 278 56 0 1 127 1 0 4 4 2 106 0 4 212 0 1 22 43 13 40 1 132 61 chain 189924 chr7 159345973 + 148427553 148431212 L1PA7 6471 + 1818 6458 10124 180 0 1 327 3 4 199 323 0 37 0 2 67 1 4 81 2 0 166 0 4 511 815 2228 75 1 2 304 0 2 136 122 0 132 8 7 18 17 19 134 chain 23490 chr7 159345973 + 148440599 148440928 L1MA4 2864 + 1860 2190 51602 49 10 15 88 3 1 14 1 0 91 1 0 72 chain 3699 chr7 159345973 + 148453148 148453194 LTR37A 408 + 351 397 93616 46 chain 74035 chr7 159345973 + 148462235 148463229 MER11A 1151 + 8 1135 23084 77 0 91 54 0 4 60 4 0 149 0 1 94 0 1 144 5 7 53 0 4 60 2 3 25 17 48 37 0 1 60 13 14 140 chain 33770 chr7 159345973 + 148519818 148520253 MER4A1 472 + 0 472 38873 19 6 12 61 5 15 118 0 21 226 chain 370018 chr7 159345973 + 148531013 148535111 L1PA5 6144 + 2027 6139 5657 511 0 1 1144 0 1 27 0 1 628 0 4 276 1 0 1360 0 9 137 1 0 13 chain 43746 chr7 159345973 + 148586370 148586900 MER41A 554 + 0 534 32290 443 0 4 87 chain 12453 chr7 159345973 + 148604434 148604698 L1PB1 5432 + 5178 5422 66064 42 2 1 14 2 1 34 1 4 7 1 0 15 2 0 6 16 6 18 3 1 5 1 0 14 2 0 24 1 0 21 1 0 13 5 4 14 chain 32486 chr7 159345973 + 148610179 148610630 MLT2A1 477 + 0 477 39957 15 0 4 109 0 1 40 4 1 215 23 43 39 0 4 6 chain 3453 chr7 159345973 + 148621495 148621533 MER21B 843 + 255 293 95625 38 chain 12720 chr7 159345973 + 148632710 148632922 MSTA 426 + 0 216 65579 76 0 1 23 3 4 22 28 34 46 4 0 10 chain 18571 chr7 159345973 + 148652979 148653328 THE1B 368 + 0 357 58025 100 22 23 54 65 73 56 7 6 45 chain 16761 chr7 159345973 + 148666423 148666662 MER30 238 + 0 238 60076 80 1 0 21 8 0 11 2 10 116 chain 69906 chr7 159345973 + 148678977 148680005 L1MA3 4352 + 61 1125 24015 19 0 1 72 0 7 5 4 0 9 2 0 5 10 15 46 0 3 63 0 1 55 0 2 226 0 1 25 7 11 21 0 32 92 2 0 16 0 3 63 1 0 4 0 1 8 2 0 7 1 0 23 4 0 164 6 0 16 5 4 30 1 0 14 chain 5429 chr7 159345973 + 148691573 148691635 MLT2D 439 + 47 109 83560 62 chain 32621 chr7 159345973 + 148779731 148780126 MLT2A1 477 + 0 399 39844 140 0 1 28 1 5 149 1 0 76 chain 19375 chr7 159345973 + 148810697 148810922 AluSp 311 + 11 308 57154 56 0 72 169 chain 4766 chr7 159345973 + 148821015 148821072 U7 62 + 4 61 86881 57 chain 26915 chr7 159345973 + 148833176 148833456 AluYg6 310 + 0 280 46389 280 chain 26305 chr7 159345973 + 148885501 148885794 AluY 311 + 5 298 47261 90 2 1 36 0 1 165 chain 6665 chr7 159345973 + 148941487 148941562 HY5 76 + 0 75 78751 75 chain 21898 chr7 159345973 + 148946262 148946543 AluSx4 309 + 9 286 53970 19 2 1 13 3 0 244 chain 132608 chr7 159345973 + 148948899 148950447 LTR12C 1709 + 0 1709 13766 309 0 1 4 1 0 385 0 159 253 1 0 5 3 1 107 0 4 54 0 1 426 chain 8823 chr7 159345973 + 148963314 148963407 HY4 93 + 0 93 72940 93 chain 13422 chr7 159345973 + 148968749 148969096 MSTB 430 + 0 391 64435 20 0 4 55 2 1 32 119 153 42 1 0 4 14 21 41 0 1 17 chain 9605 chr7 159345973 + 148983754 148983855 HY3 101 + 0 101 71256 101 chain 8555 chr7 159345973 + 148992420 148992527 L1MB5 1630 + 1339 1445 73550 53 1 0 53 chain 2903 chr7 159345973 + 149019826 149019861 Charlie1a 1436 + 1316 1351 100821 35 chain 4872 chr7 159345973 + 149033062 149033146 U6 107 + 11 86 86308 7 0 1 9 12 0 51 0 2 5 chain 3061 chr7 159345973 + 149048978 149049113 MLT1F2 592 + 223 424 99214 23 7 6 16 69 136 20 chain 30089 chr7 159345973 + 149051313 149051752 MLT2A1 477 + 0 477 41966 169 4 1 9 0 1 14 5 11 96 5 13 69 0 2 10 8 0 10 3 35 37 chain 242557 chr7 159345973 + 149051752 149057567 HERVL-int 5654 + 0 5654 8408 101 0 6 49 2 1 254 0 4 122 350 0 162 0 1 8 1 2 116 7 8 36 0 5 163 340 4 82 2 0 330 1023 2464 25 1 0 53 6 8 88 1 3 174 1 9 163 0 13 52 328 0 46 1 0 55 8 0 290 0 6 193 304 2 14 13 0 110 1 2 54 0 1 85 0 3 37 1 0 21 341 28 201 chain 23116 chr7 159345973 + 149057889 149058203 MLT2A1 477 + 14 333 52187 114 6 7 34 7 11 153 chain 12476 chr7 159345973 + 149064995 149065142 AluSz6 309 + 134 281 66024 147 chain 8829 chr7 159345973 + 149120591 149120706 Tigger3a 397 + 158 303 72919 96 1 31 18 chain 12960 chr7 159345973 + 149148737 149148983 MER30 238 + 0 238 65166 103 51 35 15 7 12 24 1 4 45 chain 29187 chr7 159345973 + 149236949 149237389 MLT2A1 477 + 0 463 43070 18 1 3 119 0 1 28 4 1 102 19 9 104 13 41 20 0 1 5 0 4 7 chain 25559 chr7 159345973 + 149301072 149301442 THE1B 368 + 0 368 48388 47 0 9 8 9 0 25 0 1 22 0 1 44 6 0 15 3 2 32 5 8 154 chain 6576 chr7 159345973 + 149310189 149310261 tRNA-Cys-TGY 72 + 0 72 79051 72 chain 6912 chr7 159345973 + 149331128 149331200 tRNA-Cys-TGY 72 + 0 72 77915 72 chain 76411 chr7 159345973 + 149335313 149336608 L1PB1 5432 + 4215 5418 22459 27 7 8 130 0 1 228 0 4 15 3 0 75 6 8 91 1 6 5 2 0 31 11 12 246 84 12 24 1 0 4 7 6 10 9 5 5 2 0 50 21 18 44 1 0 16 1 0 4 17 9 17 25 20 24 1 0 21 1 0 13 1 0 14 chain 6239 chr7 159345973 + 149351175 149351250 L1MB3 1562 + 610 685 80208 75 chain 17507 chr7 159345973 + 149369641 149369927 MER31A 484 + 188 484 59238 10 3 0 76 1 4 27 2 1 79 10 7 29 11 24 30 0 1 8 chain 48992 chr7 159345973 + 149411594 149412387 L1PA14 3548 + 2704 3435 29958 59 1 0 157 0 1 17 3 1 10 10 8 43 2 0 5 2 0 105 2 0 5 5 3 13 2 0 6 1 0 84 1 0 50 36 0 64 1 0 6 4 0 38 4 2 12 5 3 18 1 0 21 chain 6528 chr7 159345973 + 149546539 149546611 tRNA-Cys-TGY 72 + 0 72 79245 72 chain 173511 chr7 159345973 + 149553501 149555841 SVA_D 2077 + 30 2056 10928 27 38 0 635 0 40 180 150 0 35 11 0 28 79 1 58 1 2 7 0 2 41 1 0 97 50 0 201 1 0 4 24 0 13 4 0 58 0 1 8 0 1 289 2 0 298 chain 11656 chr7 159345973 + 149554390 149554531 SVA_D 2077 + 958 1099 32550 44 2 0 32 1 2 7 0 1 55 chain 6531 chr7 159345973 + 149554605 149554684 SVA_D 2077 + 1251 1330 32550 79 chain 2067 chr7 159345973 + 149554889 149554914 SVA_D 2077 + 1535 1559 32550 7 1 0 17 chain 5967 chr7 159345973 + 149556710 149556782 tRNA-Cys-TGY 72 + 0 72 81202 72 chain 4719 chr7 159345973 + 149558041 149558107 tRNA-Cys-TGY 72 + 0 65 87147 24 2 1 40 chain 18176 chr7 159345973 + 149572696 149572958 LTR10E 629 + 0 264 58487 20 1 0 37 0 2 6 2 1 86 15 17 95 chain 43720 chr7 159345973 + 149572962 149573450 L1PA4 6152 + 5660 6151 32308 92 0 3 396 chain 6781 chr7 159345973 + 149584724 149584796 tRNA-Cys-TGY 72 + 0 72 78380 72 chain 6181 chr7 159345973 + 149597954 149598026 tRNA-Cys-TGY 72 + 0 72 80423 72 chain 6006 chr7 159345973 + 149608375 149608447 tRNA-Cys-TGY 72 + 0 72 81055 72 chain 24822 chr7 159345973 + 149612739 149613051 LTR14A 344 + 16 344 49551 37 1 0 35 8 17 61 0 8 170 chain 6912 chr7 159345973 + 149635686 149635758 tRNA-Cys-TGY 72 + 0 72 77914 72 chain 155528 chr7 159345973 + 149652829 149655258 L1MA3 4352 + 1874 4345 12038 57 2 1 33 0 2 168 7 8 51 0 1 13 0 1 104 1 0 37 1 2 10 4 8 143 10 5 32 2 0 37 3 4 94 0 1 347 3 11 211 0 1 20 0 1 72 46 48 81 4 1 73 54 9 47 7 34 74 0 81 229 3 0 33 82 61 35 7 11 69 4 0 19 6 4 23 3 2 5 1 0 26 21 16 15 chain 3855 chr7 159345973 + 149654500 149654545 L1MA3 4352 - 796 841 92432 45 chain 6181 chr7 159345973 + 149664823 149664895 tRNA-Cys-TGY 72 + 0 72 80422 72 chain 33800 chr7 159345973 + 149671597 149672030 LTR17 781 + 277 754 38848 6 2 0 9 0 2 33 1 0 250 0 1 117 2 46 13 chain 185124 chr7 159345973 + 149673889 149676127 HERV17-int 4347 + 12 4347 10329 10 0 1 4 1 0 52 1 0 36 2 0 4 0 1 19 1 0 59 24 24 105 0 430 716 1 2 282 2 0 313 0 1671 606 chain 75628 chr7 159345973 + 149697418 149698390 MER11A 1151 + 0 1151 22682 69 1 99 62 1 0 58 10 6 146 0 1 97 0 1 145 5 6 118 0 81 31 0 1 60 17 18 152 chain 6912 chr7 159345973 + 149707668 149707740 tRNA-Cys-TGY 72 + 0 72 77913 72 chain 529627 chr7 159345973 + 150116794 150123240 L1PA7 6471 + 9 6466 1845 259 0 1 140 1 2 1055 0 3 699 8 6 465 0 2 12 1 4 30 2 1 4 0 1 804 0 1 145 2 1 192 2 0 120 0 1 253 0 2 184 0 5 224 1 0 15 1 0 339 1 0 82 0 5 407 0 5 16 37 5 22 0 15 78 0 3 519 0 1 64 0 2 106 1 2 106 0 1 14 1 0 34 chain 33487 chr7 159345973 + 150138772 150139210 MER1A 529 + 99 529 39097 302 1 0 59 8 1 68 chain 7054 chr7 159345973 + 150140389 150140552 Tigger1 2417 + 1942 2107 77426 21 0 1 26 60 61 56 chain 35600 chr7 159345973 + 150140723 150141208 Tigger1 2417 + 433 913 37658 50 22 19 258 5 0 107 0 3 43 chain 106200 chr7 159345973 + 150153076 150154233 L1PA3long 6157 + 5000 6157 17545 1157 chain 130643 chr7 159345973 + 150197883 150199625 SVA_C 1631 + 37 1627 13962 14 0 25 128 0 11 325 40 0 306 91 0 6 4 0 12 2 0 3 1 0 32 1 0 4 46 15 37 2 0 9 1 0 38 3 0 8 2 0 8 1 0 233 3 1 366 7 0 9 chain 4710 chr7 159345973 + 150198719 150198787 SVA_C 1631 + 870 980 67993 8 0 1 29 0 42 14 1 0 16 chain 2147 chr7 159345973 + 150198852 150198883 SVA_C 1631 + 1041 1072 67993 31 chain 31745 chr7 159345973 + 150307239 150307703 LTR7C 471 + 0 471 40542 157 0 3 205 51 54 20 1 2 30 chain 38548 chr7 159345973 + 150312816 150313265 LTR7C 471 + 0 449 35675 180 0 1 4 1 0 264 chain 207503 chr7 159345973 + 150490228 150492609 L1PA5 6144 + 3711 6098 9442 923 0 2 21 0 1 877 1 2 189 0 2 370 chain 84574 chr7 159345973 + 150494716 150495655 L1PA3long 6157 + 3794 4733 20703 939 chain 310628 chr7 159345973 + 150496244 150499988 L1P2 5180 + 2 3883 6600 148 1 0 33 11 11 53 1 0 158 1 139 23 5 0 6 2 0 108 1 2 104 1 0 5 2 1 667 0 4 862 0 1 850 0 1 198 0 3 504 chain 189504 chr7 159345973 + 150500002 150502243 L1PA6 6164 + 3906 6152 10141 48 0 1 410 0 4 946 1 0 28 0 1 58 1 0 613 4 5 132 chain 8850 chr7 159345973 + 150507187 150507288 Tigger1 2417 + 1745 1846 72863 101 chain 7544 chr7 159345973 + 150507294 150507465 L1PB1 5432 + 5249 5404 76013 32 1 0 15 1 0 6 1 0 12 30 18 14 2 0 7 0 3 14 1 0 23 2 1 10 chain 465480 chr7 159345973 + 150542955 150548787 L1PA7 6471 + 623 6464 3977 224 1 0 4 0 1 149 0 1 4 1 0 259 16 14 1203 0 1 153 18 0 701 0 1 34 0 11 875 5 6 310 1 0 4 4 5 88 0 8 71 0 1 204 1 0 542 22 1 125 0 4 74 4 26 380 4 5 44 0 1 307 chain 89844 chr7 159345973 + 150557027 150558019 L1PA3long 6157 + 5162 6157 19710 644 0 1 200 1 3 147 chain 73691 chr7 159345973 + 150559401 150560492 MER11A 1151 + 0 1151 23173 93 0 91 43 0 4 56 14 10 29 0 4 48 12 13 49 5 6 92 5 0 145 5 7 120 0 26 26 43 0 22 18 0 36 0 1 34 6 5 23 0 1 167 chain 395826 chr7 159345973 + 150597094 150602256 L1HS 6032 + 0 5051 5220 136 18 31 60 1 0 4 1 2 24 2 1 98 21 0 34 0 1 187 4 5 122 6 14 25 162 34 104 1 2 4 1 0 151 0 3 81 11 12 659 0 5 71 0 1 664 0 3 513 0 1 334 8 8 166 2 1 201 1 2 1098 0 1 117 0 1 70 chain 374537 chr7 159345973 + 150605604 150609905 L1P1 4361 + 1 4302 5577 3171 2 1 865 0 2 114 1 0 148 chain 43088 chr7 159345973 + 150611316 150611797 L1PA4 6152 + 5662 6143 32723 68 1 0 34 0 1 378 chain 7758 chr7 159345973 + 150612321 150612415 L1P3 4156 + 1 95 75466 94 chain 22012 chr7 159345973 + 150646885 150647267 MSTA 426 + 0 426 53815 100 29 59 43 10 4 11 3 9 12 3 0 56 2 0 6 18 37 89 chain 373667 chr7 159345973 + 150678386 150682759 L1P1 4361 + 10 4341 5592 109 0 14 901 1 0 355 0 9 9 9 0 172 0 1 255 59 0 99 0 2 1241 1 0 43 0 1 289 1 0 194 1 4 443 1 0 129 1 3 21 2 1 23 2 1 12 chain 541898 chr7 159345973 + 150706239 150712262 L1PA3long 6157 + 0 6156 1216 153 1 2 621 0 128 536 1 0 1819 0 4 683 0 1 2209 chain 176032 chr7 159345973 + 150712271 150714425 L1PA8 5853 + 3696 5850 10777 8 1 0 702 7 1 269 7 0 108 1 2 168 0 1 51 1 0 4 2 0 62 0 4 117 0 3 324 0 1 41 1 0 46 2 0 69 3 2 20 2 0 31 0 14 16 2 1 89 chain 71653 chr7 159345973 + 150761618 150762430 L1PA5 6144 + 3650 4458 23621 86 0 2 192 0 2 153 8 0 373 chain 111788 chr7 159345973 + 150773014 150774990 L1PA15 4387 + 2610 4242 16837 184 15 11 27 0 1 4 1 0 91 8 1 20 70 11 177 15 16 14 1 0 128 1 0 5 5 6 245 0 1 12 6 7 242 2 0 16 7 12 44 2 0 30 0 3 14 1 0 68 0 1 1 279 0 19 1 3 80 1 0 18 15 19 44 1 0 15 4 0 16 2 1 25 chain 495021 chr7 159345973 + 150807557 150813714 L1PA6 6164 + 0 6162 3292 157 0 378 6 379 0 246 0 17 10 17 0 230 1 6 112 0 2 1160 5 1 859 3 1 4 0 1 715 0 2 167 4 5 1233 0 4 836 3 0 10 chain 25036 chr7 159345973 + 150834711 150835343 L1MA8 2339 + 1554 2150 49219 21 0 1 4 1 0 7 2 1 23 7 6 25 20 15 183 166 156 66 8 0 17 12 11 10 26 16 34 chain 85279 chr7 159345973 + 150843021 150844605 L1M1 2793 + 561 2042 20576 9 1 0 9 1 0 11 3 0 12 34 16 17 82 26 5 0 1 35 61 44 19 14 9 28 2 1 28 32 29 16 22 20 5 1 0 69 0 1 32 1 0 80 0 1 9 0 2 85 1 0 41 3 5 17 9 5 14 0 1 4 9 6 89 0 1 162 13 8 24 9 1 112 0 1 15 0 2 5 8 6 30 0 4 56 2 1 115 1 4 29 1 6 40 0 6 52 chain 182170 chr7 159345973 + 150882250 150884815 L1PB2 3958 + 1322 3838 10485 94 0 1 165 8 4 87 0 1 151 1 0 172 2 3 146 6 7 85 0 1 237 1 4 297 13 7 89 15 5 46 1 0 43 9 6 286 7 0 6 6 0 42 2 0 43 0 1 12 1 0 13 4 0 63 2 0 12 1 0 4 1 0 90 10 9 64 1 0 63 1 0 40 3 0 20 82 79 18 chain 8148 chr7 159345973 + 150890228 150890373 L1MB8 1703 + 903 1053 74524 17 0 4 9 7 8 76 7 0 7 1 8 21 chain 78822 chr7 159345973 + 151027013 151027969 LTR5_Hs 974 + 0 974 21914 255 18 0 23 0 2 79 0 5 160 1 0 14 7 18 205 0 19 194 chain 3903 chr7 159345973 + 151183054 151183102 MER33 330 + 15 63 92103 48 chain 8848 chr7 159345973 + 151284098 151284228 MER65A 464 + 336 464 72864 92 12 10 26 chain 12712 chr7 159345973 + 151319114 151319275 MER107 203 + 0 179 65600 46 0 1 37 1 18 77 chain 8652 chr7 159345973 + 151514466 151514693 L1MB8 1703 + 1057 1285 73346 30 35 37 48 50 51 6 1 0 5 1 0 51 chain 15805 chr7 159345973 + 151588658 151588872 THE1B 368 + 154 368 61281 15 1 0 31 0 2 104 7 6 56 chain 19101 chr7 159345973 + 151602670 151602994 THE1C 375 + 0 331 57443 15 2 0 159 65 74 83 chain 4619 chr7 159345973 + 151629184 151629244 MER58A 224 + 152 212 87707 60 chain 42387 chr7 159345973 + 151738390 151738860 MER9a1 513 + 0 471 33136 383 0 1 87 chain 7137 chr7 159345973 + 151778407 151778494 MSTB1 431 + 336 423 77140 87 chain 3397 chr7 159345973 + 151823398 151823436 MLT1C 463 + 51 89 96099 38 chain 3783 chr7 159345973 + 151911288 151911332 MSTB2 466 + 411 455 92969 44 chain 13479 chr7 159345973 + 151946513 151946659 L1PA5 6144 + 5831 5977 64337 146 chain 23691 chr7 159345973 + 151973481 151973788 THE1D-int 1627 + 1312 1622 51289 58 8 0 113 0 5 105 0 6 23 chain 21519 chr7 159345973 + 151973793 151974148 THE1D 372 + 0 362 54483 161 56 63 69 0 1 43 7 6 19 chain 3345 chr7 159345973 + 151978451 151978517 MER5A1 166 + 46 112 96651 37 1 0 4 10 11 14 chain 20374 chr7 159345973 + 152075530 152075811 AluSp 311 + 11 297 55919 42 6 1 61 2 5 10 7 14 153 chain 3539 chr7 159345973 + 152214398 152214439 MER6B 211 - 3 44 94945 41 chain 11051 chr7 159345973 + 152318944 152319150 Tigger4b 360 + 2 232 68485 61 53 76 28 0 1 64 chain 74739 chr7 159345973 + 152319151 152320137 LTR13 1007 + 0 1007 22908 73 2 0 14 0 7 224 0 11 52 4 5 49 12 13 234 22 21 112 0 1 109 0 2 27 0 2 19 2 1 31 chain 2740 chr7 159345973 + 152324238 152324317 MADE1 96 + 0 96 102043 46 5 22 28 chain 90279 chr7 159345973 + 152351584 152352653 MER11C 1089 + 0 1073 19630 58 0 1 533 0 1 83 1 0 26 0 2 182 0 1 186 chain 29382 chr7 159345973 + 152421040 152421611 L1PA15 4387 + 3810 4366 42765 5 0 2 115 1 0 73 23 20 77 1 0 18 23 27 38 1 0 18 6 2 11 18 17 34 6 3 43 4 2 12 25 21 8 1 0 10 chain 27037 chr7 159345973 + 152469549 152469898 THE1A 353 + 0 351 46215 27 4 0 83 1 0 108 0 7 126 chain 123115 chr7 159345973 + 152470215 152472422 THE1A-int 1579 + 0 1574 15002 170 0 1 132 6 7 129 316 0 32 9 10 792 342 0 53 0 1 154 0 21 72 chain 10401 chr7 159345973 + 152472427 152472626 THE1A 353 + 0 198 69616 77 58 57 64 chain 7754 chr7 159345973 + 152472627 152472730 THE1A 353 + 198 301 75478 35 0 3 5 3 0 60 chain 23721 chr7 159345973 + 152477430 152477721 AluSp 311 + 8 294 51246 23 0 1 94 6 0 168 chain 3490 chr7 159345973 + 152479778 152479822 MLT1B 390 + 329 374 95312 26 0 1 18 chain 15454 chr7 159345973 + 152500010 152500244 MER4A 717 + 160 458 61718 90 11 30 45 5 10 26 13 53 44 chain 22918 chr7 159345973 + 152531828 152532117 AluSp 311 + 10 306 52485 128 2 12 151 3 0 5 chain 28432 chr7 159345973 + 152612801 152613154 THE1A 353 + 0 353 44220 110 1 0 185 0 1 57 chain 37950 chr7 159345973 + 152644668 152645132 MER75 514 + 45 514 36110 229 0 1 7 5 8 207 0 1 16 chain 5715 chr7 159345973 + 152690547 152690636 L1PB1 5432 + 5346 5430 82274 24 1 0 21 1 0 13 1 0 14 1 0 6 1 0 6 chain 54011 chr7 159345973 + 152697537 152698189 LTR12C 1709 + 599 1709 28225 4 1 0 47 0 278 143 0 47 106 0 4 276 1 0 12 1 132 61 chain 38109 chr7 159345973 + 152704524 152705051 LTR10A 586 + 0 586 35982 18 0 1 152 5 35 18 1 30 27 1 2 220 8 6 77 chain 29362 chr7 159345973 + 152711531 152711925 MER51B 395 + 0 395 42795 15 11 10 225 0 1 4 1 2 138 chain 19639 chr7 159345973 + 152764347 152764665 AluSc8 310 + 0 306 56870 52 4 5 9 5 0 54 10 0 13 0 2 10 20 16 47 1 2 51 4 7 38 chain 46121 chr7 159345973 + 152838135 152838683 L1PA7 6471 + 5910 6461 31002 397 12 15 139 chain 191112 chr7 159345973 + 152879194 152881352 L1PA5 6144 + 3961 6144 10063 525 0 4 801 0 4 676 1 14 18 0 4 137 chain 25526 chr7 159345973 + 152884632 152884990 LTR7 482 + 0 474 48444 23 13 36 42 0 50 60 8 50 44 0 1 168 chain 25593 chr7 159345973 + 152929549 152929896 THE1B 368 + 0 356 48332 172 2 1 19 5 7 107 5 13 37 chain 31110 chr7 159345973 + 152961964 152962328 L1PA7 6471 + 6100 6464 41052 364 chain 7724 chr7 159345973 + 152982292 152982383 MER41B 635 + 515 606 75554 91 chain 35305 chr7 159345973 + 153011838 153012307 L1PA8 5853 + 5394 5852 37823 39 9 8 123 1 0 44 2 0 70 13 11 50 3 2 20 2 1 34 3 0 56 chain 32041 chr7 159345973 + 153023872 153024226 L1PA3long 6157 + 5803 6157 40321 354 chain 27087 chr7 159345973 + 153098067 153098394 L1PA7 6471 + 6114 6441 46142 172 4 6 6 2 0 143 chain 3380 chr7 159345973 + 153100847 153100909 MADE1 96 - 16 96 96298 21 11 29 30 chain 85328 chr7 159345973 + 153199378 153200585 L1PB1 5432 + 4257 5427 20561 23 0 2 346 3 0 151 2 0 18 1 9 297 1 0 11 11 0 20 1 0 24 4 0 10 2 0 52 2 1 15 1 0 45 1 0 9 29 18 18 3 1 5 1 0 14 2 0 6 0 1 17 1 0 22 1 0 12 1 0 18 2 0 5 chain 50636 chr7 159345973 + 153225309 153225987 LTR12_ 688 + 0 688 29333 142 1 2 195 0 17 22 5 6 45 8 0 180 1 0 79 chain 175481 chr7 159345973 + 153270142 153272115 L1PA4 6152 + 4001 5977 10803 1187 13 14 98 0 1 183 0 1 492 chain 4719 chr7 159345973 + 153302963 153303068 L1MA6 2487 + 2166 2255 87132 54 36 20 15 chain 320085 chr7 159345973 + 153304582 153308336 L1PA6 6164 + 2393 6161 6406 26 0 1 20 7 0 142 0 4 1260 6 5 44 0 1 19 0 4 728 0 3 52 0 1 615 0 5 338 0 1 438 6 10 46 2 0 5 chain 30494 chr7 159345973 + 153328211 153328601 MLT2A1 477 + 0 397 41576 142 0 1 25 0 4 210 1 3 12 chain 15499 chr7 159345973 + 153390623 153390843 MER50 708 + 465 685 61656 37 1 0 128 1 0 5 5 6 30 0 1 13 chain 4411 chr7 159345973 + 153429169 153429337 MLT1F 544 + 353 544 88835 21 101 124 46 chain 15516 chr7 159345973 + 153430920 153431381 LTR9B 643 + 20 436 33673 75 4 1 90 67 21 109 1 5 115 chain 43240 chr7 159345973 + 153431427 153431982 LTR6B 557 + 0 557 32620 50 1 0 309 0 1 47 1 2 66 2 0 5 5 7 8 0 1 4 1 2 25 2 0 7 0 1 22 chain 5755 chr7 159345973 + 153431982 153432153 LTR9B 643 + 472 643 33673 171 chain 123790 chr7 159345973 + 153464971 153466549 THE1A-int 1579 + 0 1579 14882 451 5 6 210 5 4 80 0 1 282 5 3 282 2 3 16 0 1 240 chain 8852 chr7 159345973 + 153488872 153488978 L1PA10 4194 + 3454 3560 72858 106 chain 19759 chr7 159345973 + 153493680 153494008 THE1C 375 + 16 341 56723 30 11 8 14 46 46 62 0 1 84 1 0 80 chain 30645 chr7 159345973 + 153494045 153494475 THE1C-int 1605 + 2 494 41432 14 1 2 78 0 57 13 3 0 136 0 1 4 4 3 130 5 12 42 chain 28511 chr7 159345973 + 153505094 153505492 MLT2A1 477 + 0 393 44111 131 20 10 28 0 4 149 2 1 60 0 2 8 chain 31630 chr7 159345973 + 153517466 153517904 MER4A1 472 + 0 472 40638 14 0 2 210 18 39 129 0 13 39 2 0 26 chain 40389 chr7 159345973 + 153535445 153536007 MLT2A2 560 + 0 560 34394 19 8 0 122 22 18 21 1 0 219 3 14 147 chain 33588 chr7 159345973 + 153575299 153575727 THE1B-int 1605 + 0 432 39012 184 0 3 116 5 6 123 chain 15815 chr7 159345973 + 153577223 153577582 THE1B 368 + 2 368 61265 79 53 54 34 76 81 60 1 2 56 chain 7289 chr7 159345973 + 153581187 153581300 L1MA3 4352 + 4173 4280 76697 6 1 0 82 2 0 14 3 0 5 chain 42303 chr7 159345973 + 153613278 153613736 L1PA2 6032 + 5573 6031 33187 458 chain 7434 chr7 159345973 + 153630308 153630431 MER85 139 + 2 139 76292 37 12 16 33 1 11 40 chain 47685 chr7 159345973 + 153689874 153690441 LTR22 571 + 0 568 30405 436 3 4 128 chain 27825 chr7 159345973 + 153792740 153793085 THE1A 353 + 10 352 45143 100 1 0 152 2 0 90 chain 121237 chr7 159345973 + 153793086 153794683 THE1A-int 1579 + 0 1579 15311 505 0 10 90 67 15 21 12 36 290 4 5 423 1 0 184 chain 27448 chr7 159345973 + 153794683 153795037 THE1A 353 + 0 353 45644 107 7 6 240 chain 34583 chr7 159345973 + 153805600 153806010 L1PA5 6144 + 5731 6142 38296 79 5 6 326 chain 98646 chr7 159345973 + 153814185 153815320 L1P1 4361 + 3211 4341 18456 213 2 0 726 1 0 155 1 0 23 2 1 12 chain 29382 chr7 159345973 + 153817568 153817931 L1PA5 6144 + 5783 6143 42763 22 1 2 82 0 2 140 1 0 104 5 0 8 chain 85920 chr7 159345973 + 153854323 153855251 L1PA2 6032 + 5104 6032 20462 928 chain 19686 chr7 159345973 + 153914017 153914306 THE1B 368 + 6 306 56799 169 2 0 17 35 48 66 chain 10247 chr7 159345973 + 154057160 154057280 HERVE-int 4064 + 2594 2714 69908 120 chain 49332 chr7 159345973 + 154057429 154058019 HERVE-int 4064 + 2118 2705 29824 93 3 0 494 chain 46642 chr7 159345973 + 154059367 154059953 HERVE-int 4064 + 2118 2705 30797 88 6 5 121 0 2 54 0 1 5 1 0 311 chain 3148 chr7 159345973 + 154060506 154060546 HERVE-int 4064 + 2118 2158 98386 40 chain 47130 chr7 159345973 + 154060973 154061559 HERVE-int 4064 + 2118 2705 30599 88 6 5 121 0 2 54 0 1 5 1 0 311 chain 4217 chr7 159345973 + 154067041 154067098 MER3 215 + 162 215 90022 15 4 0 38 chain 53957 chr7 159345973 + 154074902 154075807 L1PB1 5432 + 4566 5430 28243 62 3 0 340 4 0 45 7 9 81 1 4 7 5 0 22 2 0 8 1 0 14 17 11 47 22 20 43 2 1 16 3 0 16 9 0 14 1 0 5 3 1 13 3 1 24 1 0 21 2 1 9 2 1 20 1 0 4 1 0 4 chain 25803 chr7 159345973 + 154098043 154098418 THE1C 375 + 0 375 48008 60 17 12 52 0 1 10 0 4 46 1 2 163 8 7 18 chain 39669 chr7 159345973 + 154249841 154250300 LTR2 463 + 0 463 34909 187 0 3 5 1 0 159 0 1 13 0 1 94 chain 45843 chr7 159345973 + 154261312 154261864 L1PB1 5432 + 4240 4789 31134 388 3 0 161 chain 59257 chr7 159345973 + 154329451 154330197 L1PA8 5853 + 5111 5853 26581 150 6 9 104 0 3 185 1 0 46 2 0 47 3 0 23 2 1 12 1 0 5 1 0 4 0 1 39 2 1 19 1 0 93 chain 17019 chr7 159345973 + 154379313 154379522 L1PA6 6164 + 5960 6162 59784 187 1 0 9 6 0 6 chain 109002 chr7 159345973 + 154401550 154402757 L1PA3long 6157 + 4953 6156 17181 7 3 0 4 1 0 1192 chain 79110 chr7 159345973 + 154457147 154457985 L1HS 6032 + 5194 6032 21835 838 chain 19675 chr7 159345973 + 154458125 154458425 THE1B 368 + 0 306 56815 108 11 13 48 2 0 5 1 2 14 7 10 10 0 4 16 1 0 10 1 0 66 chain 82949 chr7 159345973 + 154465333 154466361 L1PA7 6471 + 5434 6466 21029 75 1 0 112 7 10 458 0 1 47 1 2 73 1 0 6 7 8 240 chain 21446 chr7 159345973 + 154539397 154539642 L1PA5 6144 + 5899 6144 54588 245 chain 33378 chr7 159345973 + 154555258 154555626 L1PA4 6152 + 5783 6151 39192 368 chain 25255 chr7 159345973 + 154630594 154630948 L1PA8 5853 + 5503 5853 48860 18 0 1 42 1 0 46 2 0 68 2 1 14 1 0 47 2 1 19 14 13 58 0 2 20 chain 58343 chr7 159345973 + 154677876 154678665 LTR12 884 + 0 880 26852 94 0 2 59 6 7 115 0 66 12 0 22 34 0 1 31 9 8 12 3 0 18 0 3 396 chain 38785 chr7 159345973 + 154754661 154755142 L1PA8 5853 + 5379 5853 35507 185 1 0 44 2 0 70 2 1 9 1 0 52 2 1 19 1 0 93 chain 10692 chr7 159345973 + 154918271 154918399 PRIMA4_LTR 623 + 495 623 69058 128 chain 6627 chr7 159345973 + 155000082 155000159 MER61E 571 + 390 467 78878 77 chain 58559 chr7 159345973 + 155034659 155035296 SVA_C 1631 + 889 1613 26800 54 0 87 583 chain 3911 chr7 159345973 + 155043736 155043777 MER87 546 + 163 204 92042 41 chain 4889 chr7 159345973 + 155104613 155104667 MER4E 760 + 0 54 86207 54 chain 91780 chr7 159345973 + 155150928 155151989 MER11C 1089 + 0 1063 19373 592 0 1 144 0 1 325 chain 25279 chr7 159345973 + 155173269 155173566 AluY 311 + 11 309 48816 115 0 1 182 chain 32624 chr7 159345973 + 155286321 155286768 MLT2A1 477 + 0 477 39838 167 6 3 33 5 6 176 4 0 8 11 47 37 chain 99134 chr7 159345973 + 155314283 155315446 L1PA7 6471 + 5301 6464 18396 159 1 2 159 1 0 843 chain 16530 chr7 159345973 + 155430967 155431155 L1PA5 6144 + 5955 6143 60331 188 chain 3296 chr7 159345973 + 155433972 155434013 MSTA 426 + 385 426 97047 41 chain 4863 chr7 159345973 + 155446519 155446572 Charlie1 1172 + 530 583 86357 53 chain 5435 chr7 159345973 + 155604226 155604300 MLT1D 503 + 17 89 83530 7 2 0 65 chain 93762 chr7 159345973 + 155627434 155628500 L1PA6 6164 + 5097 6162 19072 1056 1 0 9 chain 2893 chr7 159345973 + 155930535 155930566 MER53 195 - 89 120 100886 31 chain 3693 chr7 159345973 + 155945670 155945709 MER51A 677 + 622 661 93663 39 chain 22628 chr7 159345973 + 155987157 155987517 THE1B 368 + 1 368 52942 168 1 0 21 7 10 14 1 5 11 1 0 9 15 14 53 10 13 49 chain 12577 chr7 159345973 + 156074626 156074794 MER30 238 + 50 236 65832 57 4 21 52 0 1 55 chain 13809 chr7 159345973 + 156133062 156133286 L1PB 1623 + 1312 1524 63871 25 1 0 113 11 9 25 1 0 4 4 1 9 8 4 13 1 0 9 chain 25853 chr7 159345973 + 156153006 156153342 THE1B 368 + 12 359 47935 32 0 15 110 1 0 31 2 0 87 7 6 66 chain 33123 chr7 159345973 + 156161266 156161639 L1PA4 6152 + 5771 6143 39419 127 1 0 245 chain 17559 chr7 159345973 + 156309587 156309811 L1PA8 5853 + 5633 5853 59165 49 1 0 6 1 0 52 2 1 19 1 0 93 chain 13102 chr7 159345973 + 156313991 156314275 MER44A 345 + 1 344 64925 17 34 60 29 13 19 48 0 4 79 38 60 20 0 1 6 chain 27404 chr7 159345973 + 156369901 156370258 THE1B 368 + 0 368 45698 44 0 15 110 1 0 31 2 0 87 7 6 75 chain 118309 chr7 159345973 + 156392866 156394182 L1PA4 6152 + 4508 5829 15832 828 0 4 49 0 1 439 chain 3368 chr7 159345973 + 156433513 156433581 L1MA10 1535 + 1472 1535 96402 31 17 12 20 chain 88868 chr7 159345973 + 156501290 156502341 L1PA7 6471 + 5417 6469 19879 207 0 4 82 1 0 749 2 0 10 chain 30496 chr7 159345973 + 156528635 156528974 L1PA4 6152 + 5813 6152 41571 339 chain 25472 chr7 159345973 + 156537334 156537698 THE1B 368 + 0 368 48519 168 36 41 4 0 1 18 1 0 10 1 0 126 chain 16243 chr7 159345973 + 156570382 156570765 L1PB1 5432 + 5070 5420 60697 33 3 4 7 1 0 24 1 0 9 21 16 7 2 0 50 2 1 17 1 0 37 6 5 16 69 50 24 1 0 21 1 0 13 1 0 16 chain 54100 chr7 159345973 + 156590864 156591537 MER11B 1079 + 0 667 28191 101 1 0 158 3 0 304 34 32 72 chain 68227 chr7 159345973 + 156599093 156599848 L1PA3long 6157 + 5400 6157 24397 181 0 2 574 chain 13295 chr7 159345973 + 156621642 156621813 L1MA8 2339 + 43 213 64630 31 1 0 139 chain 4086 chr7 159345973 + 156646803 156646849 MSTC 436 + 1 47 90872 46 chain 8630 chr7 159345973 + 156652622 156652756 Tigger3b 1229 + 484 634 73389 77 12 24 6 0 1 23 0 3 16 chain 89647 chr7 159345973 + 156699158 156700140 L1PA4 6152 + 4743 5738 19739 561 0 4 241 0 9 180 chain 134855 chr7 159345973 + 156739422 156741623 L1M1 2793 + 534 2685 13551 6 1 0 15 89 63 17 76 26 41 87 108 18 14 11 54 11 8 102 1 2 170 4 5 89 7 0 39 0 1 6 1 0 174 0 8 366 1 0 16 0 1 5 2 0 221 13 18 27 0 1 141 1 9 11 3 1 105 6 8 13 1 0 188 7 6 39 1 0 12 chain 113347 chr7 159345973 + 156772283 156774886 L1PA15 4387 + 2418 4366 16624 173 2 1 65 1 0 41 556 244 43 0 3 83 0 3 93 6 5 22 0 2 144 8 1 216 3 2 14 4 3 130 0 2 5 20 3 14 0 1 82 3 1 16 10 9 52 3 1 15 1 0 8 0 2 16 1 0 77 2 1 75 0 1 13 8 7 23 1 0 54 2 1 14 10 6 12 1 0 32 0 1 6 26 23 35 324 15 27 1 0 10 chain 103225 chr7 159345973 + 156802830 156803972 L1PA4 6152 + 4819 5970 17929 730 0 9 412 chain 5191 chr7 159345973 + 156808809 156808876 MER41B 635 + 481 547 84722 26 1 0 40 chain 2745 chr7 159345973 + 156825448 156825498 L1MA3 4352 + 4228 4276 102001 25 10 8 15 chain 34738 chr7 159345973 + 156828794 156829280 LTR10D 510 + 0 510 38197 61 15 18 16 0 1 76 0 5 11 1 5 17 4 12 11 2 0 5 3 2 30 0 1 22 0 5 212 chain 35489 chr7 159345973 + 156848081 156848613 L1PA15 4387 + 3521 4100 37733 40 5 6 107 2 1 37 0 1 7 7 10 59 0 37 65 3 1 40 1 0 23 0 11 12 1 0 80 15 14 28 chain 2984 chr7 159345973 + 156855321 156855356 L1MCa 1829 + 451 486 100015 35 chain 23373 chr7 159345973 + 156858971 156859263 AluSp 311 + 0 297 51812 174 4 9 114 chain 3721 chr7 159345973 + 156868986 156869034 MER45B 1037 + 787 835 93467 48 chain 404373 chr7 159345973 + 156874589 156880480 L1PB1 5432 + 92 5414 5100 52 0 1 11 1 3 211 25 24 12 2 0 359 17 0 319 0 4 212 0 1 108 3 1 127 0 4 68 0 2 840 0 1 36 8 0 104 17 88 140 2 0 5 0 1 7 2 1 48 0 4 44 2 0 5 0 6 45 0 1 23 1 0 4 1 2 92 0 2 49 307 0 452 0 2 115 5 0 73 0 4 362 0 4 54 0 6 378 0 4 8 3 0 23 310 0 159 1 3 206 5 7 84 1 2 8 2 0 21 1 0 10 1 0 14 5 1 8 2 0 53 3 2 14 1 0 60 3 0 6 16 6 19 7 4 15 3 1 26 1 0 18 2 0 14 1 0 9 chain 36545 chr7 159345973 + 157063879 157064273 L1PA3long 6157 + 5752 6146 37048 394 chain 28657 chr7 159345973 + 157064601 157064951 THE1A 353 + 0 353 43862 110 1 0 49 0 1 33 0 1 101 0 2 56 chain 7680 chr7 159345973 + 157083926 157084030 MSTA-int 1630 + 370 471 75680 96 3 0 5 chain 4645 chr7 159345973 + 157095399 157095453 LTR54 533 + 360 414 87557 54 chain 23546 chr7 159345973 + 157105475 157105772 THE1A 353 + 0 296 51512 110 1 0 186 chain 4006 chr7 159345973 + 157142626 157142695 L1PA16 3655 + 3525 3592 91413 40 2 3 8 4 1 15 chain 2883 chr7 159345973 + 157309348 157309383 MER34C2 569 + 496 531 100995 35 chain 4495 chr7 159345973 + 157312849 157312901 LTR62 707 + 431 483 88359 52 chain 30670 chr7 159345973 + 157315545 157316161 MER4E1 777 + 331 769 41407 124 3 4 4 0 1 34 220 46 6 6 0 219 chain 3934 chr7 159345973 + 157346265 157346307 MER66B 489 + 295 337 91878 42 chain 277084 chr7 159345973 + 157509918 157513074 L1PA5 6144 + 2971 6144 7517 187 4 0 12 0 1 295 0 14 715 0 2 397 0 2 693 1 2 690 18 19 144 chain 2777 chr7 159345973 + 157516190 157516276 LTR19A 502 + 417 502 101783 13 11 9 10 23 24 29 chain 50909 chr7 159345973 + 157624867 157625716 L1PB1 5432 + 4605 5420 29234 24 3 0 408 16 16 50 8 7 4 1 0 20 1 0 13 16 11 11 3 1 44 6 7 16 1 0 43 1 0 16 3 0 5 16 7 13 41 36 13 1 0 22 1 0 12 1 0 16 chain 41113 chr7 159345973 + 157665643 157666141 L1PA6 6164 + 5664 6162 33905 339 1 9 7 8 0 143 chain 159086 chr7 159345973 + 157760776 157762757 L1PA2 6032 + 4053 6032 11799 147 8 0 313 1 0 667 0 7 845 chain 75039 chr7 159345973 + 158054987 158055961 LTR13 1007 + 0 1007 22834 72 2 0 309 8 9 97 0 13 154 0 2 30 0 12 8 0 1 108 3 4 87 0 7 48 0 2 6 2 0 6 3 1 31 chain 3319 chr7 159345973 + 158063118 158063259 LTR12C 1709 + 810 872 96854 27 1 0 11 88 10 14 chain 59660 chr7 159345973 + 158100850 158101575 L1PB1 5432 + 3793 4525 26471 239 1 2 135 1 0 36 0 2 26 0 1 241 0 4 46 chain 14119 chr7 159345973 + 158119155 158119348 L1MB3 1562 + 720 910 63423 24 2 0 46 2 0 27 0 1 92 chain 13316 chr7 159345973 + 158119585 158119814 MER44A 345 + 79 305 64595 23 9 0 18 13 11 41 6 10 18 0 4 101 chain 56569 chr7 159345973 + 158201275 158202022 MER4E 760 + 0 760 27406 23 1 2 29 0 1 4 1 0 103 2 0 7 6 0 84 7 8 102 1 3 79 0 3 103 0 1 14 0 13 181 chain 76019 chr7 159345973 + 158236790 158237758 LTR5_Hs 974 + 0 974 22565 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 30665 chr7 159345973 + 158368870 158369382 MLT2A1 477 + 0 477 41409 161 14 11 141 0 12 60 4 0 10 91 51 31 chain 4348 chr7 159345973 + 158482904 158483167 MER39 703 + 166 577 89186 15 23 145 28 62 58 16 90 120 29 chain 5399 chr7 159345973 + 158544277 158544353 MER30 238 + 14 106 83704 12 4 20 60 chain 25243 chr7 159345973 + 158594717 158595097 MSTA 426 + 0 426 48881 108 0 21 4 1 0 21 0 6 43 5 3 30 2 0 60 1 21 73 16 20 16 chain 71352 chr7 159345973 + 158604764 158605550 L1PA3long 6157 + 5368 6153 23682 652 1 0 133 chain 2826 chr7 159345973 + 158617157 158617279 HAL1 992 + 444 573 101426 30 65 74 8 1 0 4 1 0 13 chain 8109 chr7 159345973 + 158626055 158626153 LTR38C 690 + 60 158 74620 98 chain 28029 chr7 159345973 + 158627854 158628152 AluYg6 310 + 0 298 44819 298 chain 59285 chr7 159345973 + 158657522 158658166 SVA_D 2077 + 1432 2076 26573 644 chain 21856 chr7 159345973 + 158692498 158692749 AluSp 311 + 39 290 54031 251 chain 10207 chr7 159345973 + 158697129 158697314 Tigger3b 1229 + 387 568 70000 26 17 12 73 27 28 42 chain 4006 chr7 159345973 + 158745058 158745120 MADE1 96 - 5 96 91409 24 1 30 37 chain 24887 chr7 159345973 + 158809201 158809497 AluSc 308 + 6 302 49460 296 chain 4635 chr7 159345973 + 158809537 158809592 L1MB8 1703 + 963 1018 87624 55 chain 78208 chr7 159345973 + 158834548 158835506 LTR13A 966 + 0 966 22049 76 0 4 47 0 1 75 0 1 80 2 1 99 1 0 510 0 2 11 0 2 57 chain 6629 chr7 159345973 + 158844968 158845055 MER4B 649 + 0 86 78873 23 2 1 62 chain 17614 chr7 159345973 + 158853204 158853451 MER4B 649 + 0 287 59108 54 1 0 102 8 50 8 1 0 73 chain 22343 chr7 159345973 + 158854373 158854654 L1PA7 6471 + 6182 6468 53349 132 6 15 132 4 0 7 chain 27317 chr7 159345973 + 158899540 158899889 THE1A 353 + 6 353 45804 38 0 1 62 4 3 102 10 8 133 chain 23806 chr7 159345973 + 158966764 158967243 LTR10E 629 + 0 549 51094 16 1 0 21 0 3 117 16 91 99 1 0 4 0 1 6 24 23 48 11 6 4 0 1 13 58 59 22 1 0 10 2 0 5 chain 45675 chr7 159345973 + 158994076 158994928 L1PA15 4387 + 3454 4356 31221 59 2 12 44 28 29 44 26 90 21 0 1 58 2 0 9 19 14 56 3 1 40 1 0 153 5 6 4 1 0 9 1 0 26 1 0 21 1 6 9 3 0 19 1 0 23 4 0 7 1 0 39 42 39 21 3 1 14 5 0 27 chain 295357 chr7 159345973 + 159079192 159082442 L1PA4 6152 + 2709 5968 6968 359 0 4 1098 0 1 1127 0 4 666 chain 31715 chr7 159345973 + 159113059 159113537 LTR2B 499 + 0 499 40566 14 1 0 38 47 70 322 14 13 42 chain 142982 chr7 159345973 + 159288790 159290661 L1PA7 6471 + 4550 6468 12864 28 0 1 61 27 0 8 0 27 107 0 28 19 1 2 124 1 0 58 0 9 153 4 5 363 0 1 676 0 7 80 8 9 135 0 1 7 2 0 9 chain 452219 chr7 159345973 + 159298379 159303565 L1PA4 6152 + 1 5192 4330 161 6 7 251 0 1 1013 1 0 290 0 1 1604 0 2 355 1 0 771 0 2 733 chain 30021 chr7 159345973 + 159322673 159323052 PABL_A 660 + 281 660 42032 379 chain 35187 chr7 159345973 + 159324031 159324492 MER4A1 472 + 0 472 37903 109 0 1 265 19 29 68 chain 40332 chr8 145138636 + 99876 100533 LTR9B 643 + 0 643 34423 133 0 2 65 4 9 5 0 2 172 5 6 35 67 41 30 7 0 11 0 10 70 13 12 40 chain 56353 chr8 145138636 + 101817 102879 MER4E1 777 + 0 768 27470 17 4 0 24 1 0 155 7 5 4 1 0 127 310 0 158 5 27 26 9 7 6 0 4 208 chain 23685 chr8 145138636 + 146018 146327 L1PA8A 6298 + 5870 6175 51297 129 9 9 126 4 0 41 chain 510039 chr8 145138636 + 156283 162706 L1PA7 6471 + 0 6468 2767 196 3 2 63 2 3 148 11 7 141 1 8 49 17 18 20 1 0 4 0 1 228 20 14 530 5 0 265 0 1 243 0 1 458 2 3 229 0 1 450 3 1 12 0 4 299 0 7 6 13 11 61 8 8 5 3 0 187 3 7 144 1 0 165 4 2 95 0 1 248 0 5 131 0 35 125 0 2 55 2 0 191 1 2 462 1 0 251 0 1 12 1 0 17 7 11 423 1 0 246 1 2 142 2 0 9 chain 3843 chr8 145138636 + 210642 210685 MER72 723 + 680 723 92542 43 chain 83555 chr8 145138636 + 252773 253782 LTR5B 1012 + 0 1012 20901 101 8 10 472 5 4 116 0 1 51 0 1 256 chain 86307 chr8 145138636 + 253782 254824 L1PA6 6164 + 5112 6154 20361 141 1 0 62 0 3 80 1 0 594 17 14 4 0 1 97 0 1 45 chain 50169 chr8 145138636 + 307726 308286 L1PA3long 6157 + 5597 6157 29498 560 chain 18341 chr8 145138636 + 357457 357690 L1PB1 5432 + 4586 4819 58311 41 3 0 53 0 3 136 chain 21989 chr8 145138636 + 441097 441348 L1PA7 6471 + 5041 5292 53850 251 chain 53712 chr8 145138636 + 441349 441997 L1PA7 6471 + 5292 5952 28316 322 0 3 83 0 2 15 1 4 148 0 4 79 chain 6598 chr8 145138636 + 517832 517943 L1MC1 2226 + 1942 2048 78976 36 20 15 55 chain 33391 chr8 145138636 + 522283 522753 LTR15 485 + 0 475 39187 107 0 1 16 4 0 26 9 11 121 0 4 37 2 1 4 0 1 108 1 0 5 2 0 14 3 8 11 chain 110255 chr8 145138636 + 525640 528524 L1MA3 4352 + 41 3843 17044 66 0 4 34 0 13 17 1 0 65 0 3 38 1260 2138 35 15 32 22 11 6 74 0 1 92 4 7 37 1 0 125 0 6 16 0 2 177 21 14 114 0 4 96 8 9 245 0 1 239 13 12 58 chain 23435 chr8 145138636 + 550286 550653 THE1B 368 + 0 368 51701 15 2 0 23 1 6 63 8 19 7 11 0 7 1 2 29 4 3 24 2 0 170 chain 98600 chr8 145138636 + 551348 552624 HSMAR1 1287 + 0 1287 18466 105 9 13 13 0 1 9 0 2 26 0 1 361 4 5 19 1 0 187 2 0 154 0 1 47 0 3 109 0 1 230 chain 203952 chr8 145138636 + 558735 561835 L1PA8A 6298 + 3167 5854 9572 89 17 18 73 5 3 64 1 5 56 1 0 108 1 0 287 2 3 32 0 1 192 5 4 170 1 3 116 1 3 143 1 9 279 1 0 71 441 0 588 1 0 138 0 1 82 0 1 65 0 14 69 chain 9689 chr8 145138636 + 560455 560571 L1PA8A 6298 - 239 355 71078 116 chain 18907 chr8 145138636 + 560580 560856 L1PA8 5853 + 5583 5853 57630 26 2 0 64 7 6 13 4 3 45 4 3 17 1 0 93 chain 2724 chr8 145138636 + 623406 623468 L1MB7 1623 + 582 643 102153 26 20 19 16 chain 3084 chr8 145138636 + 794122 794155 Harlequin-int 5206 + 2430 2463 98953 33 chain 11898 chr8 145138636 + 1208912 1209234 L1PB 1623 + 1308 1586 67012 34 9 1 103 1 0 7 2 1 11 120 88 22 2 0 11 chain 18441 chr8 145138636 + 1228026 1228237 L1PA5 6144 + 5929 6143 58182 5 0 3 206 chain 28884 chr8 145138636 + 1595381 1595695 AluYb8 318 + 0 310 43508 126 4 0 184 chain 554822 chr8 145138636 + 1607577 1613555 L1PA2 6032 + 51 6032 426 1960 0 3 4018 chain 457266 chr8 145138636 + 1712027 1723033 L1PA7 6471 + 450 6412 4204 124 24 20 16 23 24 65 3 4 234 8 7 397 2 0 5 3 6 140 0 3 540 1 0 106 0 1 38 0 1 177 302 0 281 1 2 98 5 8 91 2 0 6 9 10 9 0 2 285 337 0 12 5 0 110 0 2 38 315 0 123 1 2 65 0 3 76 0 5 598 0 2 217 4126 10 261 0 1 439 0 2 288 13 11 206 1 0 15 9 13 51 0 1 108 7 10 378 0 1 117 0 1 65 0 1 30 chain 310186 chr8 145138636 + 1717493 1720985 L1PA4 6152 + 2644 6141 6612 59 0 5 463 1 0 6 1 0 25 2 1 376 0 1 285 1 0 560 0 1 77 0 3 788 1 0 847 chain 99574 chr8 145138636 + 1726725 1727988 L1PA8 5853 + 4540 5817 18348 112 0 2 333 9 15 564 0 2 39 3 1 70 20 27 35 2 1 19 1 0 19 0 1 37 chain 5169 chr8 145138636 + 1734266 1734327 MER51E 476 + 415 476 84824 61 chain 40278 chr8 145138636 + 1801297 1801747 LTR7 482 + 1 482 34458 241 0 31 209 chain 24992 chr8 145138636 + 1802855 1803183 MER4A 717 + 342 666 49294 87 13 9 228 chain 4179 chr8 145138636 + 1820790 1820858 MSTD 398 + 2 68 90263 12 8 6 48 chain 26143 chr8 145138636 + 1836712 1837053 THE1A 353 + 0 340 47509 103 8 7 230 chain 40607 chr8 145138636 + 2207201 2207733 MLT2A2 560 + 0 548 34219 47 0 2 145 1 4 198 6 17 135 chain 32706 chr8 145138636 + 2221940 2222569 LTR71B 605 + 0 455 39756 69 1 0 65 14 18 195 191 14 94 chain 7333 chr8 145138636 + 2222285 2222373 LTR71B 605 + 361 449 76560 88 chain 4753 chr8 145138636 + 2222413 2222470 LTR71B 605 + 394 451 86949 57 chain 17282 chr8 145138636 + 2242199 2242441 L1PA8 5853 + 5614 5853 59478 64 2 1 61 2 1 19 2 1 92 chain 8364 chr8 145138636 + 2242871 2243034 MSTA 426 + 8 197 73983 34 23 25 4 1 0 24 0 1 12 0 21 7 9 12 49 chain 499236 chr8 145138636 + 2336618 2342715 L1PA7 6471 + 3 6147 3156 19 0 1 389 1 2 89 1 0 78 0 2 100 0 1 564 0 6 17 0 19 205 0 3 132 0 1 1010 12 6 856 24 23 1142 1 5 820 1 2 117 3 0 11 0 7 63 0 2 8 1 0 51 0 11 382 chain 290677 chr8 145138636 + 2367139 2370368 L1PA3long 6157 + 2928 6156 7107 195 1 0 28 0 1 110 2 1 2893 chain 28057 chr8 145138636 + 2376859 2377289 L1PA8 5853 + 5422 5847 44779 137 4 3 47 2 0 10 18 10 49 2 1 12 1 0 4 4 5 38 7 6 16 1 0 62 0 9 16 chain 5672 chr8 145138636 + 2389724 2389983 L1MDa 1598 + 352 604 82457 29 145 146 24 1 0 13 4 3 30 6 0 7 chain 39679 chr8 145138636 + 2390118 2390651 MLT2A2 560 + 9 559 34906 67 2 0 5 0 2 108 0 3 9 0 1 166 10 11 11 0 1 9 0 11 146 chain 541535 chr8 145138636 + 2397987 2404043 L1PA2 6032 + 0 6030 1233 257 1 0 107 0 1 161 4 0 25 0 1 546 0 1 2059 31 8 2708 0 1 144 2 0 11 chain 537688 chr8 145138636 + 2413734 2419762 L1PA3long 6157 + 0 6156 1472 153 1 2 286 7 5 330 0 128 77 0 1 5174 chain 3161 chr8 145138636 + 2479096 2479132 MER45A 178 + 91 127 98274 36 chain 22765 chr8 145138636 + 2540947 2541227 AluSp 311 + 5 286 52727 265 0 1 15 chain 33544 chr8 145138636 + 2542532 2542963 MLT2A1 477 + 0 473 39048 140 0 1 28 0 4 151 1 0 61 3 41 47 chain 25077 chr8 145138636 + 2584147 2584505 THE1B 368 + 7 368 49159 94 1 0 68 1 0 29 0 3 8 1 5 14 23 21 119 chain 3138 chr8 145138636 + 2589782 2589815 MER31B 477 + 163 196 98484 33 chain 24481 chr8 145138636 + 2728201 2728557 LTR12C 1709 + 1284 1709 50064 112 0 102 114 14 13 20 32 0 64 chain 52079 chr8 145138636 + 2801153 2801743 L1P1 4361 + 2277 2867 28852 590 chain 19723 chr8 145138636 + 2817865 2818246 THE1B 368 + 0 368 56758 105 11 12 60 63 66 27 0 1 67 30 12 18 chain 42503 chr8 145138636 + 2931076 2931813 L1PB1 5432 + 4729 5420 33060 75 2 0 8 1 0 191 14 16 84 6 2 9 9 0 15 6 5 12 1 0 10 6 2 9 2 0 53 2 1 10 6 5 46 1 0 14 3 0 8 44 31 11 2 0 24 1 0 22 1 0 12 1 0 16 chain 234510 chr8 145138636 + 3005343 3007926 L1PA3long 6157 + 3565 6152 8618 274 0 1 1693 0 3 616 chain 17511 chr8 145138636 + 3033488 3033765 L1PA8 5853 + 5582 5853 59234 27 3 1 69 1 0 12 10 9 30 16 15 15 2 1 92 chain 17976 chr8 145138636 + 3050967 3051314 L1PA15 4387 + 4033 4365 58679 71 1 0 29 1 0 51 2 1 22 4 0 8 1 0 52 30 29 6 2 0 12 3 1 11 7 3 12 1 4 11 1 0 9 chain 15724 chr8 145138636 + 3071282 3071517 L1PA8 5853 + 5622 5853 61381 60 9 7 51 2 1 18 13 12 82 chain 23604 chr8 145138636 + 3122489 3122848 THE1A 353 + 5 353 51422 64 6 0 15 0 1 17 17 16 134 12 7 94 chain 43928 chr8 145138636 + 3152962 3153500 MER41A 554 + 15 554 32180 174 0 1 364 chain 30401 chr8 145138636 + 3208572 3209002 MLT2A1 477 + 0 464 41674 158 14 12 11 0 1 20 1 2 181 4 0 6 11 49 24 chain 9492 chr8 145138636 + 3344322 3344452 L1PA8 5853 + 5718 5846 71493 22 2 1 19 1 0 86 chain 4674 chr8 145138636 + 3365689 3365746 Tigger2b_Pri 1066 + 943 1000 87422 57 chain 219138 chr8 145138636 + 3378187 3380901 L1PA7 6471 + 3746 6470 9063 179 0 1 392 0 2 1108 1 0 41 0 5 27 5 6 106 1 5 667 1 0 12 22 21 152 chain 18890 chr8 145138636 + 3508306 3508516 L1PA5 6144 + 5933 6143 57647 210 chain 38155 chr8 145138636 + 3510916 3511387 L1PA7 6471 + 5996 6469 35944 460 0 2 11 chain 3463 chr8 145138636 + 3582688 3582816 MER33 330 + 117 243 95515 6 1 0 8 4 0 18 47 48 16 1 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3834775 3835549 L1PA4 6152 + 5198 5972 24257 774 chain 39816 chr8 145138636 + 3922862 3923546 LTR66 600 + 0 600 34803 262 0 2 4 1 0 132 100 24 20 1 18 24 31 0 33 9 14 67 chain 48663 chr8 145138636 + 3930216 3930788 LTR10C 591 + 6 591 30065 171 0 12 335 0 1 66 chain 20904 chr8 145138636 + 3939254 3939653 L1PB2 3958 + 3451 3838 55249 94 6 4 6 0 1 51 14 13 12 0 1 4 1 0 43 1 0 16 12 6 51 2 0 22 50 49 14 chain 11835 chr8 145138636 + 3981216 3981475 L1PB1 5432 + 5178 5413 67139 42 2 1 16 1 0 42 9 7 10 3 0 7 17 8 16 8 5 14 2 0 24 1 0 21 1 0 13 1 0 9 chain 168398 chr8 145138636 + 4058563 4060442 L1PA3long 6157 + 2264 4143 11198 1879 chain 54454 chr8 145138636 + 4118518 4119256 L1PA8 5853 + 5120 5853 28070 9 0 1 99 1 0 245 0 1 89 1 0 44 2 0 74 1 0 8 1 0 8 8 9 33 2 1 22 1 0 90 chain 10224 chr8 145138636 + 4159383 4159563 L1PB1 5432 + 4965 5158 69960 72 19 34 32 1 2 9 1 0 24 1 0 9 1 0 11 chain 348142 chr8 145138636 + 4176616 4180587 L1PA3long 6157 + 2179 6157 5932 933 0 1 1249 0 4 964 8 9 321 0 1 61 7 7 428 chain 52133 chr8 145138636 + 4275952 4276600 L1PA7 6471 + 5791 6468 28833 294 3 0 223 0 32 128 chain 19007 chr8 145138636 + 4361685 4361943 AluY 311 + 12 261 57543 120 1 2 15 0 1 4 1 0 94 10 0 13 chain 29005 chr8 145138636 + 4364542 4364853 AluYa5 310 + 0 310 43312 132 1 0 178 chain 14340 chr8 145138636 + 4388362 4388677 L1PB1 5432 + 5122 5409 63131 16 4 3 5 1 0 10 5 1 12 2 0 44 0 1 6 2 1 16 1 0 27 1 0 17 1 0 16 3 0 15 6 0 11 7 5 4 1 0 14 2 0 22 3 2 23 1 0 11 1 0 5 chain 23913 chr8 145138636 + 4518492 4518775 L1PA4 6152 + 5867 6151 50926 187 1 2 95 chain 130278 chr8 145138636 + 4582645 4584241 LTR12C 1709 + 0 1709 14005 579 1 0 100 6 123 35 1 0 235 0 2 38 1 0 5 3 1 106 2 6 233 5 0 246 chain 25778 chr8 145138636 + 4636801 4637255 LTR12F 595 + 0 595 48056 100 20 9 25 8 138 110 28 46 14 33 37 116 chain 5872 chr8 145138636 + 4675054 4675124 MLT1A 405 + 319 389 81589 70 chain 12473 chr8 145138636 + 4694662 4694843 MER4A1_ 611 + 419 597 66027 70 1 2 48 8 4 54 chain 541796 chr8 145138636 + 4854406 4860419 L1PA2 6032 + 7 6028 1219 249 1 0 1568 1 0 1304 0 3 1899 0 6 95 0 1 564 1 0 321 0 1 10 chain 26576 chr8 145138636 + 4910833 4911185 THE1B 368 + 0 367 46868 44 0 15 72 3 4 31 7 6 195 chain 7641 chr8 145138636 + 4919882 4920006 MLT1A1 405 + 225 349 75770 47 7 0 7 7 14 56 chain 19044 chr8 145138636 + 5014029 5014287 L1PA6 6164 + 5922 6162 57505 124 18 0 107 0 1 4 1 0 4 chain 26119 chr8 145138636 + 5083713 5083989 AluYa5 310 + 34 310 47540 276 chain 541524 chr8 145138636 + 5187029 5193146 L1PA3long 6157 + 6 6142 1236 301 0 13 695 0 1 30 0 1 1278 0 1 2401 0 4 1264 1 0 147 chain 75144 chr8 145138636 + 5197041 5197868 L1PA2 6032 + 5205 6029 22806 809 3 0 15 chain 13025 chr8 145138636 + 5281575 5281718 L1PA2 6032 + 5871 6014 65081 143 chain 3757 chr8 145138636 + 5310333 5310376 MER5A 189 + 23 66 93156 43 chain 28976 chr8 145138636 + 5324984 5325296 AluYa5 310 + 0 310 43369 97 2 0 213 chain 39892 chr8 145138636 + 5351806 5352338 L1PA8 5853 + 5320 5850 34744 200 0 2 36 5 4 48 2 0 48 0 3 17 2 1 9 1 0 52 2 1 19 2 1 89 chain 49637 chr8 145138636 + 5458915 5459466 L1P1 4361 + 2981 3534 29704 465 0 2 86 chain 90686 chr8 145138636 + 5464331 5465366 L1PA3long 6157 + 1626 2661 19553 1035 chain 2866 chr8 145138636 + 5468860 5468894 L1MA7 2200 + 1881 1915 101089 34 chain 20035 chr8 145138636 + 5497212 5497428 L1PA3long 6157 + 5449 5665 56337 216 chain 44112 chr8 145138636 + 5497428 5497918 L1PA3long 6157 + 5667 6157 32075 490 chain 40843 chr8 145138636 + 5546454 5546997 L1PA8 5853 + 5318 5853 34067 197 1 0 49 1 0 44 2 0 70 2 1 14 1 0 47 2 1 18 2 1 93 chain 27240 chr8 145138636 + 5577697 5578000 AluYa5 310 + 0 300 45913 97 2 0 35 1 0 168 chain 70144 chr8 145138636 + 5591425 5592257 MER11D 897 + 0 853 23965 243 0 1 354 0 23 217 3 0 15 chain 4842 chr8 145138636 + 5621615 5621693 MLT2D 439 + 12 93 86466 51 13 16 14 chain 133635 chr8 145138636 + 5724716 5726221 SVA_D 2077 + 14 2069 13678 23 0 18 640 0 40 143 0 486 103 3 8 68 1 0 236 0 2 288 chain 43127 chr8 145138636 + 5792362 5792899 MER41A 554 + 0 536 32696 134 2 1 401 chain 26920 chr8 145138636 + 5836150 5836450 L1PA4 6152 + 5846 6146 46380 300 chain 10045 chr8 145138636 + 5874038 5874189 L1PB1 5432 + 3641 3797 70316 68 0 1 10 20 24 53 chain 94228 chr8 145138636 + 5880042 5881644 L1PB1 5432 + 3824 5419 19008 132 5 0 35 0 1 49 2 1 163 0 2 183 4 5 55 52 65 94 0 4 92 0 2 52 11 10 35 3 11 80 5 15 193 3 0 14 10 7 14 1 0 5 39 32 33 12 11 17 1 0 36 10 9 11 29 16 16 49 41 5 1 0 21 6 5 8 1 0 15 chain 60890 chr8 145138636 + 5883776 5884501 L1PA5 6144 + 5396 6118 26137 597 14 13 12 3 1 99 chain 137098 chr8 145138636 + 5885990 5887712 L1PA7 6471 + 4696 6453 13330 23 1 0 42 0 17 25 0 2 20 0 1 158 0 3 627 0 3 224 2 3 239 0 4 49 0 1 24 0 1 116 6 9 166 chain 6395 chr8 145138636 + 5893269 5893360 L1M3 994 + 260 350 79689 34 1 0 56 chain 7639 chr8 145138636 + 5923632 5923737 Tigger4b 360 + 168 294 75775 38 1 0 8 0 22 58 chain 319315 chr8 145138636 + 5928684 5932285 L1PA3long 6157 + 2522 6142 6419 177 0 13 160 0 2 327 0 1 67 0 4 2117 1 0 752 chain 36861 chr8 145138636 + 5948551 5948975 L1PA4 6152 + 5727 6151 36839 424 chain 28058 chr8 145138636 + 5985840 5986153 AluYa5 310 + 0 309 44778 126 4 0 183 chain 3102 chr8 145138636 + 6060410 6060443 L1PA8 5853 + 5820 5853 98775 33 chain 36749 chr8 145138636 + 6106912 6107330 L1PA3long 6157 + 5686 6108 36924 186 0 3 125 0 1 107 chain 4323 chr8 145138636 + 6107332 6107381 L1PA3long 6157 + 6108 6157 89340 49 chain 100713 chr8 145138636 + 6117463 6118747 L1PA8 5853 + 4576 5853 18214 75 11 12 5 1 0 89 0 1 107 0 6 66 1 0 72 2 0 208 1 0 12 1 0 286 1 0 49 1 0 45 2 0 54 1 0 16 1 0 14 1 0 42 7 6 19 1 0 93 chain 4121 chr8 145138636 + 6137153 6137224 L1MA4 2864 + 2740 2809 90644 15 13 11 43 chain 10137 chr8 145138636 + 6140946 6141144 L1PB1 5432 + 5256 5427 70129 25 1 0 14 1 0 4 23 9 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 3 0 5 chain 5550 chr8 145138636 + 6149970 6150042 MER58A 224 + 45 118 83034 4 0 1 68 chain 18992 chr8 145138636 + 6151733 6152046 THE1B 368 + 0 328 57559 47 4 10 116 4 3 22 1 0 4 37 48 78 chain 17910 chr8 145138636 + 6189180 6189463 L1PA8 5853 + 5575 5853 58745 33 2 0 71 39 37 24 2 1 112 chain 503544 chr8 145138636 + 6191081 6196824 L1PA4 6152 + 0 5829 3011 2128 0 1 191 1 0 1196 2 0 401 4 0 954 1 0 411 0 4 12 3 0 409 0 92 30 chain 22416 chr8 145138636 + 6216876 6217279 MSTB 430 + 30 426 53246 51 2 0 9 4 5 27 1 2 71 94 87 144 chain 11706 chr8 145138636 + 6250244 6250376 MER9a2 513 + 381 513 67390 132 chain 9681 chr8 145138636 + 6264649 6264772 MER41C 542 + 419 542 71098 123 chain 27490 chr8 145138636 + 6273375 6273685 L1PA5 6144 + 5825 6135 45592 310 chain 2607 chr8 145138636 + 6333737 6333934 LTR12B 2670 + 1629 1720 102951 16 3 0 9 146 43 23 chain 92792 chr8 145138636 + 6362756 6363829 MER11C 1089 + 0 1073 19218 766 5 5 302 chain 355878 chr8 145138636 + 6382554 6386726 L1P2 5180 + 867 5084 5848 60 0 25 481 0 1 594 2 0 787 1 2 317 0 12 37 1 0 498 0 2 108 0 1 672 0 1 199 0 4 28 0 1 387 chain 50963 chr8 145138636 + 6389878 6390576 LTR12 884 + 0 884 29224 115 0 157 105 2 0 125 1 30 38 23 25 289 chain 30903 chr8 145138636 + 6399404 6399967 LTR8 732 + 39 622 41215 106 7 0 11 11 17 148 0 27 55 41 0 10 1 42 71 66 60 36 chain 8688 chr8 145138636 + 6581217 6581341 MER85 139 + 7 139 73239 89 10 18 25 chain 19850 chr8 145138636 + 6606710 6607034 THE1B 368 + 6 368 56612 35 13 42 84 6 5 26 35 45 125 chain 249984 chr8 145138636 + 6651678 6654482 L1PA4 6152 + 2363 5176 8238 1045 0 1 234 0 4 393 0 1 127 1 0 186 0 4 818 chain 33511 chr8 145138636 + 6697251 6697725 LTR2 463 + 0 463 39082 61 0 3 48 29 9 33 3 8 198 14 15 88 chain 3244 chr8 145138636 + 6699902 6699958 LTR56 451 + 13 70 97531 16 5 6 35 chain 3275 chr8 145138636 + 6747069 6747106 L1MB7 1623 + 1381 1418 97224 37 chain 17918 chr8 145138636 + 6782201 6782422 L1PA8A 6298 + 5611 5835 58737 55 0 2 143 0 1 23 chain 341701 chr8 145138636 + 7069114 7073209 HERVE-int 4064 + 0 4064 6032 715 0 1 95 3 0 722 31 6 44 1 0 727 0 1 57 0 1 74 1 0 488 1 0 476 2 0 70 1 0 587 chain 4609 chr8 145138636 + 7076452 7076506 L1MA4 2864 + 2569 2623 87751 54 chain 82100 chr8 145138636 + 7079943 7080945 LTR5A 1029 + 0 1027 21223 134 0 13 288 1 2 14 0 2 194 0 9 371 chain 4458 chr8 145138636 + 7115970 7116021 MADE1 96 + 45 96 88566 51 chain 66885 chr8 145138636 + 7151597 7152661 MER11A 1151 + 0 1143 24725 28 2 0 37 1 100 65 0 4 60 4 0 22 0 4 49 0 3 68 0 1 29 1 3 65 5 6 140 20 21 132 81 46 37 0 1 57 9 10 6 0 1 17 0 7 6 18 11 21 0 2 84 chain 85093 chr8 145138636 + 7186377 7187404 LTR5A 1029 + 0 1029 20604 104 0 1 44 1 0 39 0 1 342 1 0 433 0 2 63 chain 12393 chr8 145138636 + 7214684 7214844 L1MA8 2339 + 1931 2088 66148 23 2 0 55 1 0 79 chain 105326 chr8 145138636 + 7235516 7236911 LTR12C 1709 + 0 1709 17640 262 4 5 30 0 1 40 18 61 63 1 4 204 0 279 163 9 6 100 1 0 6 11 4 329 2 1 67 1 0 84 chain 164678 chr8 145138636 + 7325981 7328058 L1PA8A 6298 + 3885 5957 11438 216 0 1 515 5 0 749 0 1 117 2 0 24 0 1 63 4 3 382 chain 45283 chr8 145138636 + 7358689 7359285 PRIMA4_LTR 623 + 0 623 31432 169 6 29 63 4 5 20 0 1 104 0 1 43 1 2 186 chain 38817 chr8 145138636 + 7402289 7402740 LTR7 482 + 0 482 35490 261 0 31 190 chain 269180 chr8 145138636 + 7402742 7406455 HERVH-int 3825 + 0 3816 7729 78 0 1 133 0 11 309 5 0 38 1 0 10 1 0 24 1 14 13 3 0 25 1 0 41 1 0 20 126 0 3 21 0 9 2 1 49 1 0 452 15 0 210 0 1 239 8 35 129 6 8 581 0 3 308 0 1 4 77 76 7 0 1 17 1 0 5 1 2 118 138 353 263 3 8 216 chain 2124 chr8 145138636 + 7403495 7403522 HERVH-int 3825 + 604 630 105694 15 1 0 11 chain 39385 chr8 145138636 + 7407721 7408174 LTR7 482 + 0 482 35094 52 2 0 214 0 31 185 chain 5074 chr8 145138636 + 7412292 7412364 MADE1 96 + 3 91 85283 42 1 17 29 chain 23809 chr8 145138636 + 7481884 7482164 L1PA5 6144 + 5878 6144 51089 112 14 0 154 chain 48043 chr8 145138636 + 7491595 7492208 PABL_A 660 + 2 660 30280 224 6 7 19 8 52 356 chain 85859 chr8 145138636 + 7547397 7548440 LTR5A 1029 + 0 1029 20479 141 5 14 610 30 7 257 chain 86242 chr8 145138636 + 7555052 7556085 LTR5A 1029 + 0 1029 20375 141 5 14 614 13 0 260 chain 86242 chr8 145138636 + 7562702 7563735 LTR5A 1029 + 0 1029 20374 141 5 14 614 13 0 260 chain 86156 chr8 145138636 + 7570348 7571380 LTR5A 1029 + 0 1029 20398 141 5 14 495 0 1 118 13 0 260 chain 86138 chr8 145138636 + 7577997 7579029 LTR5A 1029 + 0 1029 20406 141 5 14 495 0 1 118 13 0 260 chain 41056 chr8 145138636 + 7585642 7586167 LTR5A 1029 + 0 525 33931 129 14 0 12 3 16 27 0 1 340 chain 329341 chr8 145138636 + 7587558 7591600 HERVE-int 4064 + 11 4064 6227 802 4 1 259 8 7 53 135 135 265 1 2 581 0 1 94 3 0 503 0 6 676 0 10 45 0 1 25 1 0 587 chain 84135 chr8 145138636 + 7597899 7598915 LTR5A 1029 + 0 1029 20774 134 0 13 882 chain 12524 chr8 145138636 + 7673283 7673443 L1MA8 2339 + 1931 2088 65938 23 2 0 55 1 0 79 chain 105326 chr8 145138636 + 7694072 7695467 LTR12C 1709 + 0 1709 17639 262 4 5 30 0 1 40 18 61 63 1 4 204 0 279 163 9 6 100 1 0 6 11 4 329 2 1 67 1 0 84 chain 4567 chr8 145138636 + 7791595 7791652 MER4E1 777 + 637 694 87988 57 chain 7429 chr8 145138636 + 7838720 7838832 MER4B 649 + 464 572 76311 55 13 9 44 chain 11717 chr8 145138636 + 7854591 7854746 L1PA8 5853 + 5700 5853 67369 40 2 1 19 1 0 93 chain 87926 chr8 145138636 + 8010697 8011729 LTR5A 1029 + 0 1029 20062 147 1 0 607 1 0 4 0 1 15 2 0 255 chain 85622 chr8 145138636 + 8018341 8019373 LTR5A 1029 + 0 1029 20515 141 5 14 493 5 6 115 13 0 260 chain 86630 chr8 145138636 + 8025987 8027021 LTR5A 1029 + 0 1029 20289 141 5 14 614 14 0 260 chain 42530 chr8 145138636 + 8033634 8034159 LTR5A 1029 + 0 525 33044 150 1 0 34 0 1 340 chain 324323 chr8 145138636 + 8035550 8039592 HERVE-int 4064 + 11 4064 6330 616 52 52 134 4 1 259 8 7 53 135 135 265 1 2 581 0 1 94 3 0 503 0 6 676 0 10 45 0 1 25 1 0 587 chain 84305 chr8 145138636 + 8045896 8046912 LTR5A 1029 + 0 1029 20752 134 0 13 882 chain 4375 chr8 145138636 + 8089012 8089063 MADE1 96 + 45 96 89025 51 chain 80803 chr8 145138636 + 8102595 8103724 L1PB1 5432 + 3617 4771 21472 77 1 9 17 1 6 236 6 7 153 0 1 46 1 0 33 11 13 169 2 3 86 1 0 86 4 6 41 1 5 17 1 2 75 0 2 64 chain 9924 chr8 145138636 + 8123901 8124024 LTR2 463 + 241 364 70572 123 chain 83067 chr8 145138636 + 8129509 8132622 HERVK11-int 2540 + 686 2235 21004 18 2 1 32 33 22 4 1 0 9 2 0 19 63 42 45 3 0 12 6 5 46 1594 115 9 2 0 65 10 9 14 1 0 5 42 39 12 17 7 12 1 0 25 12 1 36 21 1 46 0 3 10 3 0 359 27 22 106 1 0 140 0 1 40 28 39 47 17 15 116 chain 62982 chr8 145138636 + 8142069 8144076 HERVS71-int 4705 + 2302 4090 25633 10 1 0 10 2 0 9 1 0 10 2 1 19 9 4 12 14 7 16 1 0 8 7 4 11 4 1 7 1 0 6 16 11 12 80 62 35 1 0 53 1 0 18 45 42 17 2 0 10 1 0 29 15 9 11 1 0 15 76 61 6 1 0 7 2 0 9 3 1 19 6 5 6 2 0 28 9 7 10 1 0 9 2 1 13 14 5 19 8 7 16 1 0 4 1 0 7 82 65 4 1 0 14 0 39 8 53 0 39 1 0 18 1 0 4 5 3 14 48 40 11 1 0 13 2 0 6 3 0 21 30 22 29 35 29 16 1 0 17 2 0 57 25 20 6 1 0 29 1 0 32 6 3 51 6 4 17 1 0 34 1 0 13 2 0 5 2 1 12 12 8 5 2 0 5 1 0 29 1 0 6 1 0 5 9 6 24 12 8 20 13 10 33 3 0 23 1 0 17 2 0 6 1 0 24 4 6 10 1 0 60 2 1 9 2 0 17 23 18 43 chain 47232 chr8 145138636 + 8145204 8145756 LTR6B 557 + 0 557 30560 368 0 5 184 chain 363111 chr8 145138636 + 8155950 8160220 L1PA4 6152 + 1 5522 5766 172 0 1 550 0 1 142 0 27 76 2 1 70 0 1213 16 0 1 49 1 0 769 1 0 167 0 3 519 0 1 161 0 1 402 0 1 657 0 2 308 0 1 72 1 0 25 0 3 110 chain 75608 chr8 145138636 + 8169076 8172256 HERVH-int 3825 + 0 3271 7236 333 1 0 126 0 61 15 5 0 35 46 34 14 1 38 26 0 2 13 1 0 14 64 22 22 0 1 22 0 1 57 0 1 4 1 0 774 0 1 439 5 1 36 0 5 305 1 49 820 chain 341140 chr8 145138636 + 8173365 8177444 HERVE-int 4064 + 0 4059 6046 379 1 2 431 1 2 251 0 1 6 1 0 154 0 1 306 26 1 839 0 2 233 0 2 791 3 1 657 chain 40928 chr8 145138636 + 8180087 8180584 LTR2C 499 + 0 499 34013 110 0 1 62 5 8 76 1 0 184 1 0 58 chain 13172 chr8 145138636 + 8180584 8181138 HERVH-int 3825 + 3271 3825 7236 554 chain 87385 chr8 145138636 + 8197177 8198203 LTR5A 1029 + 0 1029 20160 150 1 0 393 14 15 222 0 3 246 chain 86852 chr8 145138636 + 8205675 8206699 LTR5A 1029 + 0 1029 20252 13 0 2 77 0 1 57 1 0 406 1 2 72 0 1 248 12 13 137 chain 30101 chr8 145138636 + 8208300 8208703 MER1A 529 + 41 443 41943 39 2 6 6 4 0 300 2 1 50 chain 98841 chr8 145138636 + 8218718 8220107 LTR12C 1709 + 0 1709 18431 14 22 29 295 3 46 28 0 1 5 1 0 45 0 1 4 3 0 22 20 0 171 0 278 132 0 47 97 46 15 311 1 0 86 1 0 82 chain 29248 chr8 145138636 + 8244525 8244922 MER48 407 + 0 407 42966 30 0 1 5 2 1 66 12 0 42 1 21 185 0 2 54 chain 30584 chr8 145138636 + 8247307 8247757 Charlie3 2679 + 2234 2679 41487 157 1 4 97 2 1 10 6 7 93 26 18 58 chain 26345 chr8 145138636 + 8252254 8252662 MSTA 426 + 0 426 47207 26 1 2 100 1 0 15 9 13 6 4 0 74 18 16 44 1 21 109 chain 13645 chr8 145138636 + 8323644 8323811 THE1C 375 + 198 364 64097 152 1 0 14 chain 3362 chr8 145138636 + 8349093 8349130 MADE1 96 - 1 38 96456 37 chain 24212 chr8 145138636 + 8380581 8380878 AluSc5 308 + 8 305 50477 100 1 2 147 1 0 48 chain 33801 chr8 145138636 + 8431309 8431843 MLT2A1 477 + 6 477 38847 163 4 1 9 0 1 24 0 1 179 38 6 15 12 0 8 10 0 24 11 3 37 chain 562585 chr8 145138636 + 8470859 8476887 L1HS 6032 + 0 6029 134 211 1 2 5816 chain 24383 chr8 145138636 + 8513918 8514230 THE1C 375 + 0 312 50195 172 0 1 12 1 0 127 chain 32981 chr8 145138636 + 8616374 8617288 MER4B 649 + 0 633 39529 25 5 0 6 19 0 44 2 1 13 1 0 28 44 87 25 329 0 111 0 15 127 8 10 30 0 15 17 9 8 71 chain 5297 chr8 145138636 + 8674741 8674805 LTR8 732 + 668 732 84205 64 chain 15222 chr8 145138636 + 8723784 8724026 L1PA8 5853 + 5609 5847 62013 73 1 0 13 0 6 7 3 0 7 12 8 17 2 1 22 1 0 84 chain 80155 chr8 145138636 + 8762669 8763559 L1PA3long 6157 + 5260 6151 21600 309 1 2 580 chain 9604 chr8 145138636 + 8803554 8803681 MER2 342 + 85 213 71258 24 1 2 102 chain 4281 chr8 145138636 + 8831435 8831487 5S 121 + 38 90 89617 52 chain 28110 chr8 145138636 + 8842983 8843292 AluYb8 318 + 0 305 44697 126 4 0 179 chain 2424 chr8 145138636 + 8978717 8978755 MER77 626 + 543 580 104056 16 3 2 19 chain 3813 chr8 145138636 + 8994560 8994615 MLT1B 390 + 14 70 92753 11 1 2 43 chain 7774 chr8 145138636 + 9000423 9000528 LTR23 429 + 320 424 75430 17 1 0 87 chain 12544 chr8 145138636 + 9097860 9098098 L1PB1 5432 + 5059 5281 65909 39 22 16 24 1 0 6 1 0 12 18 12 52 3 2 14 1 0 45 chain 4228 chr8 145138636 + 9114249 9114301 L1MEf 1413 + 1179 1231 89949 52 chain 23961 chr8 145138636 + 9128513 9128786 AluY 311 + 28 302 50851 98 0 1 175 chain 31811 chr8 145138636 + 9185050 9185479 LTR7B 505 + 0 503 40487 103 3 12 69 6 68 28 0 2 40 0 1 35 1 0 30 0 1 58 0 1 5 1 0 50 chain 21451 chr8 145138636 + 9205152 9205411 AluSp 311 + 11 289 54585 41 0 18 193 0 1 25 chain 14033 chr8 145138636 + 9249352 9249524 LTR2C 499 + 328 499 63540 11 1 0 160 chain 5872 chr8 145138636 + 9249536 9249599 LTR2C 499 + 436 499 81587 63 chain 5863 chr8 145138636 + 9249611 9249674 LTR2C 499 + 436 499 81633 63 chain 2833 chr8 145138636 + 9308713 9308745 U2 167 + 0 32 101375 32 chain 30515 chr8 145138636 + 9361167 9361542 THE1C 375 + 0 375 41547 174 3 4 172 1 0 25 chain 5764 chr8 145138636 + 9484022 9484147 MER21C 908 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2402 6466 6319 238 0 1 420 0 1 617 1 9 130 12 11 574 0 4 411 6 7 122 2 1 62 4 7 298 7 8 166 0 1 102 7 11 13 1 4 390 0 1 125 0 1 322 3 0 7 chain 505094 chr8 145138636 + 9838369 9844777 L1PA7 6471 + 0 6451 2964 243 0 1 333 3 0 32 2 0 169 3 0 54 0 1 305 0 1 18 1 3 22 4 14 56 17 36 338 1 2 484 0 1 449 9 11 65 1 2 68 0 1 292 4 8 437 2 1 50 1 0 52 0 4 157 1 0 767 0 1 166 0 4 301 0 1 593 1 0 158 0 2 319 13 13 261 5 4 151 chain 17320 chr8 145138636 + 9858995 9859593 L1PB1 5432 + 4922 5423 59434 27 1 0 7 3 10 23 185 116 12 3 0 19 1 0 11 1 0 9 20 14 49 3 2 16 1 0 44 1 0 14 26 14 18 24 19 24 1 0 19 16 15 14 1 0 5 chain 469529 chr8 145138636 + 9876807 9882700 L1PA7 6471 + 518 6467 3870 604 6 7 194 0 1 276 0 1 187 0 1 263 10 14 12 2 0 562 0 1 455 0 4 140 5 6 26 3 5 21 32 17 297 22 21 366 0 4 416 0 2 431 0 44 59 1 0 340 0 2 70 1 0 251 1 3 79 0 2 11 0 1 258 2 3 19 1 0 143 0 3 327 chain 31691 chr8 145138636 + 9941583 9941955 L1PA5 6144 + 5774 6142 40584 361 4 0 7 chain 21889 chr8 145138636 + 9976808 9977160 THE1B 368 + 6 368 53981 162 2 1 23 41 51 75 9 10 40 chain 329233 chr8 145138636 + 9991294 9995043 L1PA4 6152 + 2410 6141 6230 123 5 8 1270 1 2 354 0 1 868 24 1 1104 chain 2925 chr8 145138636 + 10015587 10015619 LTR16D 553 + 511 543 100629 32 chain 47236 chr8 145138636 + 10029725 10030279 MER41A 554 + 0 554 30559 554 chain 17834 chr8 145138636 + 10032619 10032925 L1PB3 3668 + 1834 2148 58844 93 24 30 84 9 17 54 1 0 4 20 15 17 chain 15553 chr8 145138636 + 10035739 10036121 THE1A 353 + 0 328 61586 15 2 0 31 20 21 40 26 27 29 0 1 4 102 46 71 0 1 42 chain 4107 chr8 145138636 + 10087920 10087966 MADE1 96 + 0 46 90723 46 chain 9353 chr8 145138636 + 10127208 10127327 MER85 139 + 7 139 71806 56 0 3 23 0 10 40 chain 26954 chr8 145138636 + 10286228 10286591 THE1B 368 + 0 368 46330 44 0 15 109 1 0 25 4 1 13 6 0 161 chain 7894 chr8 145138636 + 10324149 10324286 MER3 215 + 74 201 75122 29 25 0 27 1 16 55 chain 4975 chr8 145138636 + 10338231 10338292 L1MA7 2200 + 1882 1943 85780 61 chain 9464 chr8 145138636 + 10389003 10389127 MER85 139 + 2 139 71574 94 1 6 8 0 8 21 chain 5713 chr8 145138636 + 10476262 10476329 U6 107 + 40 107 82280 67 chain 14056 chr8 145138636 + 10476329 10476520 L1PA8 5853 + 5667 5853 63510 12 1 0 10 2 0 51 2 1 19 1 0 93 chain 183411 chr8 145138636 + 10502598 10504629 L1PA4 6152 + 4115 6151 10418 872 0 5 1159 chain 90918 chr8 145138636 + 10534558 10535904 L1PA15 4387 + 2512 3856 19521 77 43 44 240 1 0 162 0 1 132 2 0 350 74 70 66 14 23 136 6 4 12 4 0 27 chain 56958 chr8 145138636 + 10562553 10563295 MER4E 760 + 0 749 27284 23 0 1 169 6 7 276 7 13 45 1 0 215 chain 314293 chr8 145138636 + 10571483 10575679 HERVH-int 3825 + 0 3825 6522 145 30 1 187 2 1 40 2 1 157 5 0 30 5 1 7 1 0 10 1 0 27 0 31 19 121 0 34 86 2 4 1 0 82 1 0 907 0 5 610 0 1 137 7 10 81 0 1 443 207 41 718 0 3 89 chain 26952 chr8 145138636 + 10576937 10577329 LTR7 482 + 0 482 46333 69 8 46 85 1 11 13 7 8 31 1 32 19 0 10 158 chain 45195 chr8 145138636 + 10583822 10584375 MER41A 554 + 0 554 31478 377 0 1 176 chain 4253 chr8 145138636 + 10741587 10741646 L1MCa 1829 + 1642 1697 89805 11 4 0 44 chain 24104 chr8 145138636 + 10966387 10966678 AluY 311 + 0 287 50640 48 5 1 238 chain 3632 chr8 145138636 + 11027312 11027380 MER33 330 + 193 255 94166 25 5 0 16 6 5 16 chain 47024 chr8 145138636 + 11058246 11058850 L1PA8 5853 + 5266 5853 30650 163 18 5 130 1 0 46 2 0 71 1 0 59 2 1 18 2 1 85 0 2 6 chain 204573 chr8 145138636 + 11119737 11122022 L1PA4 6152 + 3689 5978 9552 125 0 1 1541 0 3 619 chain 3472 chr8 145138636 + 11147672 11147715 L1ME1 1623 + 1038 1081 95440 43 chain 74104 chr8 145138636 + 11240793 11241814 MER11A 1151 + 0 1151 23066 59 0 99 72 1 0 4 3 5 55 4 0 135 14 15 94 0 1 145 6 7 125 14 46 58 0 1 14 12 8 24 1 0 16 0 1 69 0 2 96 chain 8992 chr8 145138636 + 11276934 11277127 MER66B 489 + 262 458 72575 21 0 1 4 1 0 45 70 73 52 chain 134534 chr8 145138636 + 11329325 11330932 SVA_C 1631 + 45 1630 13590 582 0 37 124 0 1 54 47 0 9 4 0 11 2 1 46 1 0 42 1 0 50 1 0 16 1 0 11 5 1 600 chain 2147 chr8 145138636 + 11330085 11330110 SVA_C 1631 + 885 910 68975 25 chain 3873 chr8 145138636 + 11339471 11339516 MER58A 224 + 26 71 92334 45 chain 76436 chr8 145138636 + 11432262 11433213 L1PA7 6471 + 5500 6468 22450 118 1 4 73 15 16 100 0 2 46 0 3 309 1 0 144 1 10 143 chain 36788 chr8 145138636 + 11479817 11480301 LTR3B_ 500 + 17 500 36893 80 1 0 177 0 1 27 6 6 64 2 1 127 chain 4512 chr8 145138636 + 11480526 11480577 LTR3B_ 500 + 18 69 88259 51 chain 3357 chr8 145138636 + 11581241 11581280 L1MB3 1562 + 1130 1169 96509 39 chain 32429 chr8 145138636 + 11584984 11585402 L1PA3long 6157 + 5764 6150 40013 24 34 1 225 0 1 135 chain 152001 chr8 145138636 + 11653562 11655766 L1MA3 4352 + 2216 4352 12226 12 0 1 84 1 0 33 1 0 166 51 0 213 1 0 262 10 12 13 0 2 39 7 9 340 0 1 461 0 1 67 0 1 116 24 0 12 1 16 58 0 18 17 22 1 65 4 0 24 2 0 22 11 9 26 1 0 11 6 2 16 0 1 5 chain 18000 chr8 145138636 + 11795230 11795458 LTR12C 1709 + 769 996 58651 68 1 0 159 chain 2975 chr8 145138636 + 11961945 11962038 MER58A 224 + 46 150 100111 32 42 53 19 chain 101551 chr8 145138636 + 12022480 12023860 LTR12C 1709 + 0 1709 18122 260 19 33 45 20 63 61 0 3 185 0 278 184 1 0 4 5 3 99 18 10 180 0 4 134 13 12 69 1 0 82 chain 37363 chr8 145138636 + 12058562 12059032 L1PA5 6144 + 5676 6141 36509 41 0 1 55 2 0 9 0 2 23 1 0 327 5 0 7 chain 4213 chr8 145138636 + 12077550 12077800 L1M4 1397 + 845 1005 90044 5 2 0 53 172 84 18 chain 193144 chr8 145138636 + 12079779 12082424 L1PA8 5853 + 2020 5853 9966 254 6 10 372 4 6 87 2 0 5 0 1 115 2 1 58 0 4 63 0 1 245 22 529 99 1 2 49 3 676 407 2 5 76 0 2 274 1 0 108 0 1 94 1 0 46 2 0 69 1 0 22 3 1 18 24 23 17 1 0 33 35 36 24 chain 10087 chr8 145138636 + 12088991 12089546 LTR12D 1347 + 589 1163 70223 69 156 55 39 161 284 13 3 2 31 60 58 23 chain 90058 chr8 145138636 + 12171125 12172146 LTR5A 1029 + 0 1029 19672 150 1 0 630 0 3 96 0 6 144 chain 5323 chr8 145138636 + 12198145 12198272 MLT1C 463 + 53 167 84083 57 49 36 21 chain 37136 chr8 145138636 + 12305126 12305595 L1PA5 6144 + 5676 6141 36656 41 0 1 55 2 0 9 0 2 23 1 0 293 0 1 33 5 0 7 chain 194651 chr8 145138636 + 12326025 12328669 L1PA8 5853 + 2020 5853 9901 254 6 10 63 0 1 308 4 6 87 2 0 5 0 1 115 2 1 58 0 4 63 0 1 245 22 529 99 1 2 49 3 676 408 1 4 76 0 2 274 1 0 107 0 1 95 1 0 46 2 0 69 1 0 22 3 1 21 21 20 17 1 0 33 12 13 47 chain 90375 chr8 145138636 + 12413444 12414465 LTR5A 1029 + 0 1029 19614 150 1 0 630 0 3 96 0 6 144 chain 5323 chr8 145138636 + 12440410 12440537 MLT1C 463 + 53 167 84082 57 49 36 21 chain 2876 chr8 145138636 + 12514144 12514177 MLT1I 406 + 367 400 101025 33 chain 28825 chr8 145138636 + 12517943 12518353 MER4A1 472 + 35 449 43590 65 5 7 119 24 26 197 chain 34799 chr8 145138636 + 12530230 12530696 MER11A 1151 + 0 565 38162 31 2 0 34 1 100 65 0 4 60 4 0 146 0 1 97 5 6 21 chain 23567 chr8 145138636 + 12565134 12565537 HERVK-int 6823 + 5173 5578 51480 99 31 34 152 38 38 4 0 1 13 1 0 9 5 4 51 chain 85205 chr8 145138636 + 12565979 12567003 LTR5A 1029 + 0 1029 20583 150 1 0 338 1 3 274 0 2 197 0 2 63 chain 19077 chr8 145138636 + 12590631 12590892 L1PA8 5853 + 5586 5842 57465 22 4 2 72 5 4 54 2 1 19 1 0 82 chain 12524 chr8 145138636 + 12594131 12594291 L1MA8 2339 + 1931 2088 65937 23 2 0 55 1 0 79 chain 81727 chr8 145138636 + 12624091 12625104 LTR5A 1029 + 0 1029 21292 138 1 14 36 0 2 334 8 7 433 0 2 63 chain 19807 chr8 145138636 + 12648788 12649066 L1PA8 5853 + 5586 5852 56664 20 7 5 71 1 0 58 2 1 19 1 0 85 7 0 7 chain 12045 chr8 145138636 + 12652051 12652212 L1MA8 2339 + 1931 2089 66767 23 2 0 55 1 0 80 chain 104947 chr8 145138636 + 12673271 12674667 LTR12C 1709 + 0 1709 17696 262 29 30 5 0 1 40 10 53 71 0 3 194 0 278 175 1 0 4 4 2 100 1 0 6 11 4 330 1 0 69 1 0 82 chain 16937 chr8 145138636 + 12737318 12737641 MER2 342 + 6 342 59871 27 61 77 97 0 1 50 6 0 29 13 14 28 1 2 11 chain 5629 chr8 145138636 + 12760443 12760745 MLT1A0 366 + 30 334 82665 17 52 52 47 1 0 8 147 150 30 chain 8263 chr8 145138636 + 12778607 12778706 L1PA8A 6298 + 6192 6291 74259 99 chain 108191 chr8 145138636 + 12796147 12797467 LTR12C 1709 + 0 1709 17292 68 0 34 266 1 33 393 8 324 99 15 19 65 0 1 68 0 2 337 chain 182306 chr8 145138636 + 12807792 12809794 L1PA3long 6157 + 4016 6022 10482 1290 0 1 563 1 4 148 chain 8929 chr8 145138636 + 12852779 12852906 L1MB5 1630 + 1336 1464 72720 38 1 3 15 1 0 72 chain 3612 chr8 145138636 + 12867257 12867305 L1PB1 5432 + 5358 5404 94327 12 1 0 22 1 0 12 chain 16353 chr8 145138636 + 12877496 12877874 L1PA11 4918 + 4243 4578 60569 85 4 0 50 12 16 13 2 1 67 105 66 13 1 0 13 2 0 11 chain 3756 chr8 145138636 + 12905835 12905924 MADE1 96 - 0 96 93162 31 35 42 23 chain 51750 chr8 145138636 + 12940905 12941515 L1PA5 6144 + 5524 6132 28953 287 2 1 314 1 0 6 chain 31317 chr8 145138636 + 12958729 12959094 L1PA6 6164 + 5788 6156 40877 5 0 2 213 0 1 147 chain 10715 chr8 145138636 + 12982999 12983163 Tigger4 2445 + 186 349 69020 32 6 4 11 8 7 92 0 2 15 chain 3094 chr8 145138636 + 12987147 12987182 MIR 256 + 41 76 98834 35 chain 9279 chr8 145138636 + 13044349 13044456 U6 107 + 0 107 71953 107 chain 21024 chr8 145138636 + 13062725 13063058 THE1C 375 + 8 364 55087 23 0 3 5 3 0 7 5 0 35 1 36 50 0 1 11 0 2 5 21 13 59 1 0 92 1 0 14 chain 36240 chr8 145138636 + 13066336 13066993 L1PB1 5432 + 4786 5423 37243 178 0 1 87 1 0 51 13 11 24 50 30 52 2 1 15 1 0 26 0 2 11 34 22 29 12 9 11 2 0 24 1 0 10 3 24 13 1 0 6 chain 8245 chr8 145138636 + 13160177 13160276 HY3 101 + 0 99 74302 99 chain 42739 chr8 145138636 + 13256346 13256882 L1PA8 5853 + 5319 5847 32925 184 2 0 61 1 0 44 2 0 70 2 1 11 1 0 9 0 1 40 5 4 16 1 0 87 chain 16442 chr8 145138636 + 13413164 13413380 MER30 238 + 1 238 60459 15 0 18 73 4 10 73 3 0 48 chain 24685 chr8 145138636 + 13440612 13440953 THE1A 353 + 0 344 49757 63 5 9 33 6 5 234 chain 142956 chr8 145138636 + 13441124 13442734 L1PA4 6152 + 3904 5521 12866 734 0 5 145 0 1 705 0 1 26 chain 19528 chr8 145138636 + 13444198 13444459 L1PA6 6164 + 5903 6162 56990 98 15 16 132 3 0 13 chain 24518 chr8 145138636 + 13449541 13449827 L1PA5 6144 + 5855 6141 50000 286 chain 16499 chr8 145138636 + 13473221 13473444 THE1B 368 + 0 235 60376 39 0 15 118 2 0 4 0 1 21 3 1 36 chain 105432 chr8 145138636 + 13473468 13474957 THE1B-int 1605 + 0 1514 17624 35 1 3 312 0 2 80 28 53 305 2 8 307 75 79 24 28 14 292 chain 68707 chr8 145138636 + 13519767 13520629 L1PA7 6471 + 5601 6467 24283 13 0 3 69 3 4 15 1 0 602 1 2 158 chain 5530 chr8 145138636 + 13536028 13536108 5S 121 + 0 90 83110 25 5 15 50 chain 10611 chr8 145138636 + 13543494 13543733 L1PB3 3668 + 3385 3562 69206 6 1 0 87 85 26 24 3 1 33 chain 80125 chr8 145138636 + 13607702 13608635 LTR13A 966 + 0 966 21603 76 0 4 56 0 30 58 1 0 195 0 1 351 1 0 195 chain 26663 chr8 145138636 + 13615182 13615465 AluYb8 318 + 35 318 46738 283 chain 15217 chr8 145138636 + 13633186 13633457 THE1D 372 + 79 372 62021 73 74 96 124 chain 164653 chr8 145138636 + 13644614 13646445 L1PA3long 6157 + 4324 6157 11443 211 0 1 686 0 1 934 chain 43749 chr8 145138636 + 13648567 13649052 L1PA3long 6157 + 5672 6157 32286 485 chain 44298 chr8 145138636 + 13650158 13650660 L1PA5 6144 + 5630 6132 31950 502 chain 20864 chr8 145138636 + 13846217 13846532 THE1B 368 + 0 328 55295 172 1 0 26 35 45 63 1 5 17 chain 56174 chr8 145138636 + 13918072 13918697 L1PA3long 6157 + 5511 6157 27516 327 0 21 298 chain 100318 chr8 145138636 + 14003464 14004759 L1PA7 6471 + 5172 6469 18260 200 0 1 105 4 3 137 1 0 81 4 5 7 1 0 98 0 3 4 0 1 314 1 0 7 1 0 159 23 24 148 chain 83398 chr8 145138636 + 14044704 14045675 L1PA5 6144 + 5169 6140 20936 971 chain 12633 chr8 145138636 + 14125534 14125707 L1PA10 4194 + 3991 4161 65748 91 0 1 33 3 0 34 1 0 11 chain 492193 chr8 145138636 + 14136181 14142269 L1PA6 6164 + 0 6107 3366 21 13 0 8 10 23 145 4 5 307 2 1 208 0 1 23 0 1 270 4 0 84 0 1 224 0 1 129 1 0 686 6 1 186 4 0 632 3 1 231 0 1 32 0 1 51 0 4 229 0 4 356 0 13 71 1 2 155 2 4 537 1 0 415 0 5 233 5 7 523 1 0 275 chain 24608 chr8 145138636 + 14146624 14146892 AluYa5 310 + 34 302 49856 268 chain 4188 chr8 145138636 + 14154407 14154457 MLT1A 405 + 334 384 90212 50 chain 82168 chr8 145138636 + 14198678 14199749 MER11B 1079 + 0 1079 21207 358 0 5 167 58 68 174 8 2 285 10 9 11 chain 27941 chr8 145138636 + 14239636 14239930 AluYa5 310 + 16 310 44965 294 chain 120490 chr8 145138636 + 14245230 14246598 L1PA3long 6157 + 4781 6149 15447 524 2 1 517 0 1 325 chain 87696 chr8 145138636 + 14260131 14261110 L1PA2 6032 + 5053 6032 20099 979 chain 6184 chr8 145138636 + 14332554 14332653 HY1 111 + 0 103 80409 57 7 10 11 1 2 23 chain 28011 chr8 145138636 + 14341944 14342315 THE1A-int 1579 + 0 370 44849 169 3 4 37 7 5 155 chain 561 chr8 145138636 + 14401410 14401670 L1PA3long 6157 + 3947 4207 19090 260 chain 14983 chr8 145138636 + 14410563 14410775 L1PA8 5853 + 5645 5853 62285 30 5 4 10 1 0 55 1 0 16 1 0 93 chain 178853 chr8 145138636 + 14430076 14432630 L1PB1 5432 + 2842 5391 10640 49 14 17 12 1 0 342 2 3 444 0 1 17 2 5 93 0 4 542 8 11 130 1 6 105 1 2 128 0 1 51 3 1 189 1 2 61 1 2 43 8 7 4 1 0 20 1 0 12 1 0 10 20 14 49 21 19 42 1 0 16 46 36 14 2 0 24 1 0 21 chain 4206 chr8 145138636 + 14442872 14444822 L1PA3long 6157 + 4207 6157 19090 1950 chain 86161 chr8 145138636 + 14457007 14458014 LTR13 1007 + 0 1007 20396 249 11 14 163 3 0 581 chain 8295 chr8 145138636 + 14497606 14497700 MER30 238 + 138 232 74170 94 chain 72110 chr8 145138636 + 14502532 14503452 L1PA7 6471 + 5536 6467 23510 86 0 2 21 11 13 40 0 2 142 3 4 27 0 4 260 2 0 38 1 2 204 0 1 85 chain 73805 chr8 145138636 + 14544084 14545161 MER11A 1151 + 0 1137 23140 85 0 91 54 1 0 62 8 4 142 7 8 92 0 1 29 0 1 114 0 2 19 5 6 124 26 2 11 8 15 21 18 0 37 0 1 60 6 7 15 1 2 132 chain 69275 chr8 145138636 + 14558631 14559544 L1PB 1623 + 536 1450 24165 47 11 8 133 0 10 17 3 0 81 1 2 459 1 2 7 4 0 144 1 0 4 chain 94155 chr8 145138636 + 14566640 14568030 LTR12C 1709 + 0 1709 19023 250 4 0 6 50 37 171 44 47 143 0 278 92 6 94 83 25 0 23 11 4 384 24 23 74 chain 22190 chr8 145138636 + 14568075 14568392 L1PA8 5853 + 5535 5847 53578 29 1 0 45 2 0 22 0 1 46 2 1 8 1 0 37 0 1 15 2 1 19 1 0 87 chain 11012 chr8 145138636 + 14596672 14596819 L1PA8 5853 + 5689 5836 68537 10 0 2 39 2 1 19 1 0 76 chain 203276 chr8 145138636 + 14619109 14621447 L1PA5 6144 + 3800 6144 9599 130 1 2 215 1 0 316 0 1 123 0 1 227 1 2 466 4 5 393 9 9 120 1 2 84 0 1 247 chain 57080 chr8 145138636 + 14630379 14631031 L1PA5 6144 + 5491 6144 27244 321 0 1 331 chain 11408 chr8 145138636 + 14673491 14673650 THE1D 372 + 213 372 67903 31 0 1 88 10 9 30 chain 18369 chr8 145138636 + 14688744 14688974 L1P1 4361 + 4114 4341 58276 37 1 0 154 1 0 23 2 1 12 chain 58142 chr8 145138636 + 14730837 14731536 L1PA7 6471 + 5760 6461 26924 49 0 2 650 chain 11897 chr8 145138636 + 14736851 14737009 L1PB1 5432 + 4941 5100 67015 36 4 5 118 chain 540091 chr8 145138636 + 14803216 14809235 L1PA3long 6157 + 0 6152 1335 152 0 1 624 1 129 2169 0 1 4 1 0 880 0 2 1345 1 0 93 0 3 749 chain 169807 chr8 145138636 + 14868771 14870925 L1PA7 6471 + 3640 5809 11115 291 0 1 701 0 1 86 4 13 151 0 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568 9 0 9 0 9 2275 1 0 377 0 853 1228 chain 7451 chr8 145138636 + 16716814 16716903 PRIMA4_LTR 623 + 0 89 76242 89 chain 23513 chr8 145138636 + 16723233 16723614 THE1C 375 + 0 375 51570 105 11 12 60 40 39 80 14 8 71 chain 27014 chr8 145138636 + 16751947 16752272 L1PA7 6471 + 6101 6425 46247 127 1 0 197 chain 20718 chr8 145138636 + 16765790 16766138 THE1B 368 + 0 361 55474 18 2 0 22 0 5 9 0 1 117 62 71 118 chain 19735 chr8 145138636 + 16767671 16767955 L1PA8 5853 + 5574 5853 56747 13 0 1 22 2 0 72 15 13 45 2 1 19 1 0 93 chain 5237 chr8 145138636 + 16779423 16779502 MER58A 224 + 31 113 84520 11 6 9 62 chain 130769 chr8 145138636 + 16783726 16785270 LTR12C 1709 + 0 1709 13949 186 0 2 121 0 1 4 1 0 400 0 1 35 0 161 200 1 0 6 2 0 107 0 4 481 chain 8571 chr8 145138636 + 16809067 16809167 MER30 238 + 138 238 73515 100 chain 18458 chr8 145138636 + 16860737 16860986 L1PA8 5853 + 5608 5853 58153 74 8 6 52 2 1 18 2 1 93 chain 82127 chr8 145138636 + 16878307 16879397 L1P2 5180 + 2 1116 21218 78 0 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121 + 41 90 90461 49 chain 4903 chr8 145138636 + 20291600 20291667 LTR10E 629 + 483 548 86140 24 2 1 25 1 0 15 chain 5976 chr8 145138636 + 20358643 20358755 MLT1B 390 + 6 124 81173 15 28 34 69 chain 26331 chr8 145138636 + 20486863 20487215 L1PA8 5853 + 5509 5853 47224 55 1 0 44 2 0 74 1 0 11 6 1 44 2 3 9 0 1 9 1 0 93 chain 40938 chr8 145138636 + 20507455 20508043 MER41B 635 + 0 628 34006 49 0 1 69 6 35 322 5 6 28 11 15 24 12 17 62 chain 28353 chr8 145138636 + 20570677 20571055 MLT2A1 477 + 0 382 44340 140 10 11 18 0 4 22 2 1 186 chain 3383 chr8 145138636 + 20589633 20589669 MER61A 341 + 0 36 96273 36 chain 3844 chr8 145138636 + 20608294 20608344 L1MC4 1079 + 214 264 92537 50 chain 491267 chr8 145138636 + 20742760 20748777 L1PA6 6164 + 59 6162 3390 53 21 7 82 0 1 298 10 10 418 0 25 85 6 8 129 5 14 30 6 17 185 0 5 27 0 2 383 0 1 484 4 5 68 3 0 107 0 1 426 0 9 260 0 4 20 2 1 139 0 5 603 0 2 37 0 3 343 0 1 396 0 5 202 0 1 357 0 5 82 0 4 343 1 2 249 15 21 138 chain 476199 chr8 145138636 + 20956061 20962325 L1PA7 6471 + 5 6459 3718 163 6 74 160 3 0 8 1 0 24 12 14 51 27 28 50 13 10 19 0 5 33 21 18 46 1 2 32 0 5 18 2 1 36 3 6 7 1 0 39 16 17 99 38 60 9 24 0 213 13 32 24 0 18 122 0 12 203 18 0 138 0 2 506 14 27 12 0 18 45 0 18 60 5 4 140 5 0 60 0 16 318 4 0 61 4 0 456 4 0 28 0 4 61 8 4 87 0 2 84 1 0 227 8 7 66 3 0 562 0 4 647 13 12 283 1 5 76 0 1 89 0 3 115 0 15 34 0 7 202 4 8 138 0 4 140 chain 5901 chr8 145138636 + 21000909 21001124 MLT1A 405 + 139 381 81482 19 111 139 16 1 2 37 2 0 29 chain 28892 chr8 145138636 + 21150142 21150447 AluYk12 309 + 0 305 43495 305 chain 22715 chr8 145138636 + 21155998 21156541 L1PB1 5432 + 4984 5389 52809 114 138 31 5 1 0 8 8 0 4 1 0 10 23 17 47 2 1 15 1 0 45 1 0 15 18 12 17 2 0 7 1 0 14 2 0 24 1 0 19 chain 84013 chr8 145138636 + 21190949 21191867 L1PA3long 6157 + 5239 6157 20804 918 chain 14333 chr8 145138636 + 21200312 21200664 L1PB1 5432 + 5105 5426 63143 8 1 0 25 1 0 8 1 0 6 26 20 48 18 16 60 1 0 4 18 8 18 23 25 6 7 0 13 1 0 20 2 1 13 1 0 18 1 0 4 chain 8729 chr8 145138636 + 21219569 21219692 MER85 139 + 6 139 73148 84 3 13 36 chain 22630 chr8 145138636 + 21241202 21241470 AluSp 311 + 11 282 52938 80 0 3 188 chain 29621 chr8 145138636 + 21334638 21334996 L1PA6 6164 + 5799 6157 42459 6 2 0 205 0 1 102 0 1 43 chain 57102 chr8 145138636 + 21338753 21339377 L1PA3long 6157 + 5532 6157 27228 572 0 1 52 chain 525888 chr8 145138636 + 21431058 21437500 L1PA7 6471 + 3 6470 2006 606 0 1 784 0 1 253 7 6 254 1 0 165 0 1 80 0 1 5 0 4 14 0 7 76 0 3 149 0 1 187 6 9 31 7 1 433 12 13 8 0 4 736 2 0 20 4 2 126 0 1 19 1 0 262 8 12 380 0 3 5 1 9 280 1 0 29 0 1 617 0 4 17 3 0 41 0 1 37 1 0 217 0 1 4 1 0 249 6 0 150 0 1 32 10 9 105 chain 5216 chr8 145138636 + 21550003 21550082 MADE1 96 + 0 96 84598 22 6 23 51 chain 5569 chr8 145138636 + 21596785 21596850 Tigger3a 397 + 188 253 82946 65 chain 29678 chr8 145138636 + 21598795 21599193 L1PA8 5853 + 5458 5847 42392 102 1 0 48 2 0 34 1 0 36 2 1 9 2 0 52 2 1 19 2 1 86 chain 43871 chr8 145138636 + 21665085 21665633 MLT2A2 560 + 0 560 32209 400 5 16 73 0 1 70 chain 27190 chr8 145138636 + 21734826 21735228 MER4A1 472 + 0 472 45984 15 0 2 6 6 7 94 11 48 23 7 15 25 0 21 11 3 4 201 chain 546600 chr8 145138636 + 21825719 21831739 L1PA3long 6157 + 2 6156 932 150 1 2 622 0 128 253 5 8 1032 0 1 261 2 0 1487 0 1 372 0 1 345 0 1 1490 chain 6855 chr8 145138636 + 21884972 21885064 L1MB3 1562 + 1289 1380 78125 62 1 0 29 chain 26468 chr8 145138636 + 21934255 21934549 AluSp 311 + 4 298 47028 294 chain 27036 chr8 145138636 + 22020507 22022157 L1MA4 2864 + 1268 2319 46219 190 1245 637 23 1 0 72 0 9 55 8 9 56 chain 10021 chr8 145138636 + 22083959 22084120 L1PB1 5432 + 5123 5274 70373 15 1 0 8 1 0 12 5 1 9 2 0 52 2 1 15 1 0 38 chain 115282 chr8 145138636 + 22086380 22087813 LTR12C 1709 + 0 1709 16343 34 0 8 407 7 6 116 13 0 79 0 278 184 1 0 8 2 0 104 0 4 127 1 3 23 4 3 170 1 0 46 1 5 82 1 0 22 chain 25904 chr8 145138636 + 22255135 22255433 AluSp 311 + 0 301 47860 91 0 3 207 chain 25423 chr8 145138636 + 22454786 22455074 AluYc 301 + 0 290 48597 120 0 2 168 chain 25927 chr8 145138636 + 22731187 22731582 Tigger2 2703 + 2272 2663 47824 53 9 0 21 1 2 22 3 0 189 0 2 26 0 5 32 1 3 9 16 14 13 chain 3689 chr8 145138636 + 22805243 22805290 L1MC1 2226 + 2152 2198 93684 32 1 0 14 chain 3377 chr8 145138636 + 22898432 22898477 MLT1A 405 + 356 405 96323 38 0 4 7 chain 22200 chr8 145138636 + 22956270 22956640 MSTA 426 + 0 379 53555 15 0 1 82 17 18 43 0 4 43 16 23 108 24 13 11 0 7 11 chain 9828 chr8 145138636 + 22967643 22967872 L1MB3 1562 + 1361 1555 70766 56 62 27 7 0 6 50 11 6 10 1 0 32 chain 50620 chr8 145138636 + 23049149 23049764 PABL_A 660 + 1 618 29340 20 0 4 60 6 5 110 1 0 302 0 1 4 1 0 111 chain 129876 chr8 145138636 + 23053211 23055031 PABL_A-int 1935 + 105 1914 14054 28 8 6 57 0 1 4 1 0 54 0 1 40 1 0 37 3 2 4 1 0 70 0 2 289 0 1 161 1 0 23 6 7 5 3 0 59 4 0 32 1 0 127 13 13 196 1 0 17 0 4 116 1 9 50 0 1 205 2 1 109 1 0 18 2 0 15 15 10 10 13 8 17 chain 50135 chr8 145138636 + 23055435 23056094 PABL_A 660 + 0 660 29512 81 22 9 146 2 1 76 0 13 256 5 7 71 chain 8163 chr8 145138636 + 23121296 23121422 MER85 139 + 2 139 74501 42 4 5 37 6 16 37 chain 44189 chr8 145138636 + 23126718 23127374 MER4A 717 + 0 681 32016 253 0 9 6 0 5 67 0 1 49 25 22 140 57 69 55 0 1 4 chain 339 chr8 145138636 + 23133013 23133087 MER83 447 + 0 74 78605 74 chain 21815 chr8 145138636 + 23133087 23133427 MER4A1 472 + 1 339 54083 57 7 6 42 0 1 123 46 45 42 1 0 22 chain 179 chr8 145138636 + 23134440 23134479 MER83 447 + 355 394 78605 39 chain 44182 chr8 145138636 + 23139519 23141922 L1PA16 3655 + 1582 3198 32025 197 23 27 126 1654 853 12 0 1 64 39 46 146 0 1 26 55 56 61 chain 4046 chr8 145138636 + 23151773 23151844 L1MA8 2339 + 542 603 91109 7 8 0 31 2 0 23 chain 4704 chr8 145138636 + 23159882 23159939 MER34 540 + 445 502 87240 57 chain 14281 chr8 145138636 + 23195960 23196197 LOR1b 457 + 35 267 63219 7 13 0 4 0 1 99 0 2 19 29 34 66 chain 33426 chr8 145138636 + 23207927 23208363 THE1B-int 1605 + 2 429 39154 277 9 0 133 0 1 4 1 0 12 chain 16639 chr8 145138636 + 23238823 23239043 MER4A1 472 + 0 221 60226 15 0 2 4 0 1 11 1 0 47 1 0 141 chain 4794 chr8 145138636 + 23243634 23243699 LTR21A 479 + 379 445 86735 29 1 0 14 0 2 21 chain 102032 chr8 145138636 + 23271936 23273171 LTR12C 1709 + 0 1709 18059 258 7 9 424 0 319 61 0 47 106 0 4 178 0 102 201 chain 4884 chr8 145138636 + 23273171 23273227 MLT1B 390 + 124 180 86236 56 chain 23674 chr8 145138636 + 23282522 23282884 THE1B 368 + 2 368 51320 167 1 0 20 8 11 9 1 5 28 9 8 52 13 12 54 chain 256257 chr8 145138636 + 23311985 23314802 L1PA3long 6157 + 3329 6156 8081 58 0 1 1111 0 4 666 0 1 140 0 4 842 chain 7656 chr8 145138636 + 23325015 23325264 MER33 330 + 31 274 75736 27 49 25 36 12 17 4 1 0 39 0 3 13 41 55 7 3 0 17 chain 44828 chr8 145138636 + 23347834 23348413 L1PA6 6164 + 5635 6162 31683 155 52 0 372 chain 6679 chr8 145138636 + 23410039 23410121 Tigger3b 1229 + 969 1051 78710 82 chain 34010 chr8 145138636 + 23422116 23422548 LTR3A 482 + 0 442 38700 159 0 9 15 8 10 214 1 0 35 chain 36957 chr8 145138636 + 23489174 23489689 LTR12F 595 + 0 595 36768 102 7 2 25 24 0 14 3 1 15 0 114 115 3 0 207 chain 7470 chr8 145138636 + 23512394 23512498 MER33 330 + 184 287 76199 71 1 0 32 chain 7860 chr8 145138636 + 23513452 23513556 MER85 139 + 23 139 75227 62 0 14 22 2 0 18 chain 19578 chr8 145138636 + 23543393 23544351 Tigger3b 1229 + 548 1162 56925 13 0 215 88 0 1 8 3 1 69 644 85 83 20 21 30 chain 5613 chr8 145138636 + 23565423 23565489 MER41A 554 + 400 466 82743 66 chain 32832 chr8 145138636 + 23604648 23605195 L1PB1 5432 + 4914 5420 39644 189 25 15 20 1 0 9 1 0 13 4 0 7 1 0 53 2 1 16 1 0 43 1 0 16 3 0 6 20 10 15 2 0 5 1 0 14 2 0 24 1 0 21 2 1 12 1 0 16 chain 4611 chr8 145138636 + 23637847 23637912 MLT1D 503 + 33 99 87744 35 1 2 29 chain 3854 chr8 145138636 + 23815379 23815425 L1M4c 1769 + 359 405 92466 46 chain 21315 chr8 145138636 + 23949392 23949696 AluSp 311 + 11 297 54746 30 34 16 240 chain 363190 chr8 145138636 + 24046872 24052078 L1PA8 5853 + 500 5853 5764 23 119 94 9 0 16 7 1 0 6 11 11 63 7 0 7 0 11 10 0 1 6 2 1 11 3 0 7 9 12 229 4 45 67 0 3 91 4 8 55 0 1 255 0 4 331 0 2 92 2 7 31 1 2 8 2 0 7 2 0 19 7 5 146 12 0 68 0 4 207 0 6 47 0 4 75 4 9 142 2 1 22 18 19 30 0 5 25 4 5 47 0 1 15 1 5 15 0 12 61 0 1 5 5 30 286 1 0 33 3 0 10 1 7 89 6 8 203 6 9 85 5 3 51 0 1 17 0 4 33 2 0 5 0 2 120 0 3 99 5 4 436 8 12 274 0 5 124 0 4 16 0 2 71 0 1 9 1 5 13 1 5 225 2 1 6 0 7 212 1 0 38 1 6 70 14 12 54 1 0 14 5 4 91 chain 24131 chr8 145138636 + 24125044 24125325 L1PA7 6471 + 6180 6461 50606 281 chain 8683 chr8 145138636 + 24165129 24165241 MLT2A2 560 + 443 560 73256 85 0 1 21 0 4 6 chain 45058 chr8 145138636 + 24221259 24221845 L1PA8A 6298 + 5159 5762 31547 46 1 0 6 0 1 183 1 0 77 0 4 13 0 6 78 0 3 80 0 1 4 0 3 28 0 1 69 chain 34074 chr8 145138636 + 24235506 24235953 LTR2 463 + 0 463 38650 106 21 24 57 3 0 31 0 15 148 0 1 81 chain 414905 chr8 145138636 + 24237782 24242746 Harlequin-int 5206 + 125 5063 4959 163 27 13 181 0 1 40 4 5 115 2 0 25 8 5 4 0 1 529 0 3 374 0 1 526 0 4 2397 27 10 20 1 0 6 5 6 5 1 0 234 0 2 5 2 0 263 chain 5634 chr8 145138636 + 24242746 24242811 LTR2 463 + 315 380 82630 65 chain 7269 chr8 145138636 + 24242811 24242893 LTR2 463 + 381 463 76769 82 chain 2865 chr8 145138636 + 24275167 24275197 L1PA8 5853 + 5534 5564 101102 30 chain 8212 chr8 145138636 + 24275198 24275311 L1PA8 5853 + 5564 5675 74380 43 3 1 67 chain 13058 chr8 145138636 + 24275334 24275501 L1PA8 5853 + 5688 5853 65011 54 1 0 23 1 0 88 chain 9485 chr8 145138636 + 24279208 24279321 L1PA8 5853 + 5741 5853 71503 19 1 0 93 chain 140863 chr8 145138636 + 24283099 24284968 L1PA10 4194 + 2277 4146 13035 167 0 1 89 0 2 92 1 2 33 1 5 6 0 17 9 29 0 114 1 2 15 0 3 294 1 4 112 14 25 66 1 3 77 0 4 19 0 3 473 16 8 15 12 0 173 9 6 30 chain 112511 chr8 145138636 + 24359351 24360774 L1PA7 6471 + 5022 6465 16748 329 4 7 149 0 3 89 0 4 21 2 3 71 0 1 108 1 0 52 0 3 175 0 1 129 1 11 129 2 0 5 0 2 95 1 0 49 4 0 7 chain 89224 chr8 145138636 + 24377218 24378355 L1PA7 6471 + 5319 6468 19818 83 0 2 195 0 4 11 2 0 71 13 15 9 1 0 39 0 1 332 0 4 79 0 4 130 0 4 14 5 0 12 2 1 139 chain 18275 chr8 145138636 + 24382443 24382783 L1PB1 5432 + 5114 5422 58390 15 6 5 13 1 0 9 7 3 8 2 0 52 1 0 17 1 0 44 1 0 16 3 0 6 16 6 17 2 0 6 1 0 15 2 0 24 1 0 21 1 0 13 1 0 18 chain 7528 chr8 145138636 + 24407959 24408057 L1PB2 3958 + 3579 3676 76055 38 1 0 59 chain 98159 chr8 145138636 + 24423107 24424332 L1PA7 6471 + 5136 6458 18514 136 5 6 340 1 4 467 0 1 105 6 99 13 2 0 11 4 6 128 1 0 6 chain 104374 chr8 145138636 + 24495635 24496957 THE1B-int 1605 + 250 1599 17774 180 1 26 219 0 3 639 2 3 16 2 1 98 1 0 164 chain 24197 chr8 145138636 + 24496963 24497318 THE1B 368 + 0 368 50503 44 7 23 99 18 16 105 7 6 75 chain 57881 chr8 145138636 + 24503341 24504021 L1PA7 6471 + 5775 6455 27006 680 chain 418292 chr8 145138636 + 24559229 24563849 L1PA3long 6157 + 533 6157 4906 699 0 1 1456 2 1 976 2 1005 1343 0 1 142 chain 9945 chr8 145138636 + 24564988 24565110 MER85 139 + 6 138 70542 83 0 10 39 chain 115370 chr8 145138636 + 24577634 24579392 L1PA7 6471 + 5034 6452 16332 608 6 19 37 0 2 149 0 1 97 27 6 140 0 1 44 0 1 106 334 0 190 3 0 17 chain 212578 chr8 145138636 + 24621490 24624435 L1PB1 5432 + 2519 5422 9248 5 0 2 79 10 11 43 0 1 88 1 0 113 3 2 132 0 1 102 0 1 40 0 1 135 1 0 5 0 1 423 1 2 311 24 5 19 0 5 409 8 12 62 0 3 94 1 3 160 16 17 22 10 12 49 0 1 71 16 3 19 2 1 109 0 1 4 1 0 5 17 11 28 1 0 5 1 0 5 23 20 41 0 1 6 2 1 15 1 0 43 2 1 16 13 1 30 2 0 5 1 0 13 2 0 25 1 0 21 1 0 13 1 0 18 chain 7905 chr8 145138636 + 24672201 24672302 MER41A 554 + 434 534 75101 33 1 0 67 chain 26693 chr8 145138636 + 24684999 24685289 L1PA2 6032 + 5740 6032 46696 116 0 1 11 0 1 163 chain 185022 chr8 145138636 + 24780224 24782264 L1PA3long 6157 + 3700 5744 10336 657 0 4 1383 chain 27516 chr8 145138636 + 24821395 24821754 THE1A 353 + 0 353 45561 59 11 6 44 6 5 239 chain 118794 chr8 145138636 + 24821754 24823297 THE1A-int 1579 + 0 1579 15749 153 0 3 13 3 4 208 7 15 97 0 1 138 5 13 12 0 1 5 15 29 107 8 0 181 0 3 130 15 19 441 0 1 5 chain 553324 chr8 145138636 + 24839573 24845719 L1PA3long 6157 + 6 6157 531 1275 0 1 229 1 0 1447 0 2 1300 1 0 97 0 4 956 0 1 580 1 0 259 chain 134440 chr8 145138636 + 24873511 24875424 L1PB1 5432 + 3507 5414 13602 107 0 1 4 1 0 91 1 0 15 5 8 472 8 10 238 0 4 18 0 4 142 3 0 190 13 27 176 7 8 81 1 2 10 3 0 23 1 0 8 1 0 5 13 9 8 2 0 51 22 17 45 1 0 6 27 21 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 10 chain 7957 chr8 145138636 + 24895328 24895424 MLT1A0 366 + 260 356 74986 96 chain 3831 chr8 145138636 + 24930791 24930839 MER57B1 401 + 0 48 92638 48 chain 12187 chr8 145138636 + 24930852 24931009 MER4A1 472 + 8 177 66494 21 2 1 69 0 13 65 chain 29301 chr8 145138636 + 24933214 24933583 THE1B 368 + 0 368 42893 74 0 1 4 1 0 93 2 1 195 chain 3526 chr8 145138636 + 24972442 24972482 L1MB8 1703 + 1535 1575 95049 40 chain 19858 chr8 145138636 + 24982944 24983209 L1PA16 3655 + 3313 3579 56602 41 2 3 222 chain 12062 chr8 145138636 + 24989982 24990280 MSTB1 431 + 105 431 66736 14 19 23 34 11 0 23 7 6 4 1 0 46 61 97 63 0 1 15 chain 271184 chr8 145138636 + 25012097 25015130 L1PA4 6152 + 3116 6151 7683 393 0 1 429 1 2 414 1 3 1268 3 0 265 0 1 259 chain 10722 chr8 145138636 + 25046272 25046423 MLT1A0 366 + 0 153 69008 47 0 1 39 6 7 59 chain 4191 chr8 145138636 + 25062943 25062991 MIR 256 + 64 112 90188 48 chain 18774 chr8 145138636 + 25070138 25070454 L1MA2 4263 + 3809 4110 57820 76 5 0 10 3 0 7 12 15 41 9 7 93 7 0 46 1 0 6 chain 4076 chr8 145138636 + 25093553 25093603 MER41A 554 + 416 466 90919 50 chain 120512 chr8 145138636 + 25102461 25103887 SVA_B 1603 + 49 1597 15444 622 0 77 71 0 82 35 0 9 8 9 1 21 45 7 615 chain 130352 chr8 145138636 + 25164314 25165860 LTR12C 1709 + 0 1709 13996 309 0 1 4 1 0 177 0 1 177 7 168 274 1 0 5 3 1 107 0 4 481 chain 9542 chr8 145138636 + 25225726 25226009 L1MB2 1706 + 1411 1679 71384 71 16 20 27 125 106 44 chain 56023 chr8 145138636 + 25241490 25242158 L1PA7 6471 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25761606 L1PA7 6471 + 4924 5842 22795 443 1 0 52 4 5 191 1 4 19 0 10 62 1 0 132 chain 51395 chr8 145138636 + 25761922 25762534 L1PA7 6471 + 5844 6456 29080 612 chain 381983 chr8 145138636 + 25769808 25775159 L1PB1 5432 + 58 5413 5450 43 5 12 265 1 0 38 9 11 174 0 7 144 0 4 541 1 0 97 2 1 7 8 0 127 16 20 37 10 17 33 0 2 66 0 2 562 0 1 32 0 1 59 2 4 52 3 1 80 0 2 339 15 17 156 0 2 5 11 10 134 4 5 139 5 10 221 36 19 39 1 2 116 4 13 170 0 1 89 1 2 5 0 1 320 8 12 299 4 0 248 9 28 144 0 1 5 2 1 41 36 20 24 26 20 9 2 0 53 2 1 10 7 6 44 2 1 9 30 17 19 8 5 14 6 4 20 1 0 21 1 0 13 1 0 9 chain 54113 chr8 145138636 + 25793156 25793752 L1PA3long 6157 + 5561 6157 28188 596 chain 23724 chr8 145138636 + 25806437 25806789 THE1D 372 + 0 369 51240 139 38 55 40 0 1 105 1 0 29 chain 19947 chr8 145138636 + 25885518 25885876 THE1B 368 + 0 368 56462 111 11 12 46 43 45 14 6 14 54 1 0 4 0 1 5 8 7 55 chain 3984 chr8 145138636 + 25890684 25890799 Tigger4a 237 - 123 237 91561 18 48 48 26 1 0 22 chain 9809 chr8 145138636 + 26107965 26108131 THE1B 368 + 1 164 70802 25 0 1 44 5 0 40 0 3 6 19 17 27 chain 15565 chr8 145138636 + 26130631 26130998 MSTD 398 + 28 396 61568 87 95 84 14 26 38 30 12 13 33 1 0 69 chain 18119 chr8 145138636 + 26131544 26131793 L1PA8 5853 + 5609 5853 58547 69 2 1 12 1 0 49 2 1 10 1 0 9 4 3 90 chain 3918 chr8 145138636 + 26160603 26160650 Tigger5 388 + 179 226 91996 47 chain 33167 chr8 145138636 + 26200510 26200982 MER1A 529 + 27 529 39391 53 23 63 6 7 0 107 4 0 255 1 2 16 chain 46768 chr8 145138636 + 26209899 26210510 PABL_A 660 + 0 619 30745 128 1 2 86 2 0 5 0 2 180 0 7 55 10 8 103 0 2 41 chain 26958 chr8 145138636 + 26218423 26218782 THE1A 353 + 0 353 46324 109 2 1 92 1 0 7 13 9 135 chain 56350 chr8 145138636 + 26324425 26325137 THE1A-int 1579 + 804 1567 27471 79 4 7 423 0 1 4 1 0 73 1 49 127 chain 550953 chr8 145138636 + 26395612 26401573 L1PA2 6032 + 2 6031 681 1109 0 2 2047 0 5 7 0 52 1008 0 4 1776 1 6 13 chain 27992 chr8 145138636 + 26428703 26429071 L1PA16 3655 + 3222 3585 44878 69 2 0 287 3 0 7 chain 24731 chr8 145138636 + 26498684 26499067 L1PREC2 3366 + 2474 2854 49678 134 20 21 116 10 8 46 14 13 38 1 0 4 chain 59894 chr8 145138636 + 26676676 26677327 L1PA3long 6157 + 4680 5331 26405 651 chain 4202 chr8 145138636 + 26731347 26731420 MER53 195 + 5 79 90108 22 9 10 42 chain 4766 chr8 145138636 + 26733209 26733302 MER8 282 + 0 132 86882 42 25 64 26 chain 37132 chr8 145138636 + 26778535 26778951 L1PA5 6144 + 5725 6141 36661 416 chain 31170 chr8 145138636 + 26780631 26781128 MER1A 529 + 11 523 41006 42 36 40 22 17 10 17 0 17 124 0 1 170 18 19 8 1 0 42 chain 39355 chr8 145138636 + 26846787 26847228 L1PA3long 6157 + 5715 6156 35112 441 chain 15172 chr8 145138636 + 26855527 26855745 L1PA8 5853 + 5638 5853 62068 13 0 1 29 1 0 6 2 1 52 3 2 18 1 0 93 chain 13048 chr8 145138636 + 26877018 26877228 L1PA8 5853 + 5638 5853 65026 39 3 2 13 14 12 36 2 1 21 1 0 73 0 10 8 chain 21931 chr8 145138636 + 26883473 26883734 L1PA7 6471 + 6208 6469 53928 112 2 0 136 0 2 11 chain 12066 chr8 145138636 + 26976207 26976360 L1PA16 3655 + 3314 3467 66728 153 chain 20019 chr8 145138636 + 26981580 26981865 L1PA7 6471 + 6215 6470 56366 97 6 0 7 1 0 142 23 0 9 chain 24640 chr8 145138636 + 27030705 27031049 THE1B 368 + 2 368 49814 42 5 20 99 1 0 143 5 13 49 chain 5691 chr8 145138636 + 27048861 27048959 MADE1 96 - 0 96 82385 38 22 20 38 chain 36723 chr8 145138636 + 27101200 27101706 L1PA8 5853 + 5354 5853 36944 210 1 0 46 2 0 49 30 28 53 2 1 21 1 0 91 chain 567013 chr8 145138636 + 27113618 27119645 L1HS 6032 + 4 6032 37 1147 0 1 4880 chain 15902 chr8 145138636 + 27212580 27212787 L1PA8 5853 + 5646 5850 61151 36 1 0 58 2 1 19 1 0 90 chain 4251 chr8 145138636 + 27224865 27224920 MADE1 96 + 0 96 89815 17 0 41 38 chain 6491 chr8 145138636 + 27291184 27291634 L1MB7 1623 + 1003 1419 79380 34 1 0 4 6 9 46 73 71 20 246 212 20 chain 19741 chr8 145138636 + 27312989 27313373 THE1D 372 + 0 372 56738 15 0 2 12 1 0 24 9 0 21 3 0 6 13 17 10 2 0 77 64 65 82 10 6 35 chain 2938 chr8 145138636 + 27315040 27315071 LTR40b 463 + 415 446 100525 31 chain 7117 chr8 145138636 + 27338328 27338539 L1PB1 5432 + 5239 5427 77201 41 1 0 13 84 67 10 1 0 22 2 1 11 1 0 18 2 0 5 chain 23728 chr8 145138636 + 27352570 27352924 THE1B 368 + 0 368 51232 44 5 20 104 1 0 4 9 8 16 1 3 88 7 6 75 chain 44198 chr8 145138636 + 27376447 27377006 MER41A 554 + 0 554 32014 305 13 3 160 0 5 81 chain 12772 chr8 145138636 + 27431919 27432100 MER30 238 + 38 238 65482 69 6 0 11 12 37 83 chain 29426 chr8 145138636 + 27668259 27668566 AluYb8 318 + 1 308 42702 307 chain 40933 chr8 145138636 + 27691940 27692836 MER4D1 891 + 0 638 34010 97 0 1 68 1 2 37 305 3 27 10 41 38 1 0 6 9 11 99 1 0 185 0 11 12 chain 33301 chr8 145138636 + 27737609 27738256 L1PB1 5432 + 4846 5424 39258 77 1 2 178 99 55 11 3 1 50 2 1 16 1 0 43 1 0 16 3 0 7 14 5 19 33 28 15 1 0 21 1 0 13 1 0 16 1 0 4 chain 29986 chr8 145138636 + 27805000 27805317 AluYb8 318 + 0 318 42067 213 0 1 104 chain 94979 chr8 145138636 + 27812331 27813454 L1PA6 6164 + 5010 6147 18911 157 0 5 186 1 0 36 0 2 310 2 0 63 0 4 230 9 15 129 chain 25692 chr8 145138636 + 27826543 27826816 AluY 311 + 29 303 48185 103 0 1 170 chain 23339 chr8 145138636 + 27833229 27833523 AluSp 311 + 20 296 51867 32 23 5 239 chain 82773 chr8 145138636 + 27879980 27881497 L1PA16 3655 + 2378 3537 21069 85 14 15 83 3 0 25 6 3 86 1 0 65 8 0 44 8 0 44 6 0 52 5 9 9 1 0 18 334 6 58 0 2 149 0 2 69 1 0 88 2 0 42 1 0 49 6 0 119 0 1 36 chain 166891 chr8 145138636 + 27924665 27926595 L1PA6 6164 + 4181 6160 11278 848 0 2 129 15 54 94 1 0 359 0 1 26 0 1 401 0 7 57 chain 4077 chr8 145138636 + 27930701 27930747 THE1B 368 + 295 341 90909 46 chain 19069 chr8 145138636 + 28041891 28042238 THE1B 368 + 0 368 57470 12 0 1 48 0 1 44 5 7 4 1 0 57 59 78 51 2 0 5 3 4 56 chain 22165 chr8 145138636 + 28051655 28051914 AluSp 311 + 12 274 53618 40 0 3 219 chain 42420 chr8 145138636 + 28089941 28090664 LTR66 600 + 2 600 33115 400 187 13 25 0 49 111 chain 12624 chr8 145138636 + 28139545 28140055 MER2 342 + 82 291 65767 22 6 5 45 335 35 102 chain 134128 chr8 145138636 + 28208736 28210490 L1PA11 4918 + 1637 4487 13638 109 10 9 23 0 3 32 1 2 274 0 1054 175 0 2 241 0 16 190 5 0 446 0 20 11 0 8 61 0 4 17 0 4 21 8 0 34 2 1 10 2 0 26 0 3 42 2 0 12 chain 7389 chr8 145138636 + 28242713 28242802 MER4D1 891 + 802 891 76422 89 chain 37553 chr8 145138636 + 28264122 28264618 LTR12F 595 + 0 595 36368 91 25 0 12 11 136 131 1 0 225 chain 35985 chr8 145138636 + 28279084 28279599 MLT2A1 477 + 1 477 37421 141 0 1 24 5 9 207 0 2 10 19 0 4 14 0 10 8 0 12 4 0 37 1 0 19 chain 27320 chr8 145138636 + 28291259 28291552 AluYb8 318 + 0 291 45801 132 2 0 159 chain 22765 chr8 145138636 + 28293889 28294234 MER83 447 + 50 431 52728 174 13 20 24 0 17 92 28 40 14 chain 8333 chr8 145138636 + 28329819 28329930 MER2 342 + 131 260 74074 4 1 0 97 0 19 9 chain 40756 chr8 145138636 + 28443589 28444120 MER41A 554 + 0 554 34115 465 15 37 32 4 5 15 chain 4993 chr8 145138636 + 28530447 28530499 5S 121 + 37 89 85690 52 chain 24144 chr8 145138636 + 28630054 28630396 THE1B 368 + 0 348 50585 169 1 0 21 7 10 10 0 4 16 1 0 9 0 2 65 7 6 36 chain 23303 chr8 145138636 + 28681785 28682062 AluSp 311 + 14 285 51923 154 6 0 117 chain 164663 chr8 145138636 + 28839155 28840941 L1PA3long 6157 + 4360 6147 11441 1654 0 1 132 chain 176251 chr8 145138636 + 28880286 28882472 SVA_E 1901 + 0 1896 10767 153 1 0 664 1 0 106 279 0 35 2 1 136 1 0 658 7 0 143 chain 9588 chr8 145138636 + 28881212 28881395 SVA_E 1901 + 923 1102 44583 4 1 47 56 49 0 65 1 0 7 chain 1833 chr8 145138636 + 28881285 28881322 SVA_E 1901 + 1119 1156 55824 37 chain 1337 chr8 145138636 + 28881395 28881422 SVA_E 1901 + 1229 1256 55824 27 chain 1356 chr8 145138636 + 28881427 28881490 SVA_E 1901 + 959 1021 69328 45 5 4 13 chain 5356 chr8 145138636 + 28912025 28912093 MER47B 469 - 162 231 83930 18 0 1 50 chain 8385 chr8 145138636 + 28923517 28923620 MER2 342 + 110 213 73933 103 chain 26112 chr8 145138636 + 29102968 29103259 AluYk4 311 + 8 299 47552 291 chain 65098 chr8 145138636 + 29121107 29121797 L1HS 6032 + 4419 5109 25166 690 chain 3133 chr8 145138636 + 29139987 29140038 MADE1 96 + 45 96 98516 51 chain 3604 chr8 145138636 + 29264944 29264987 L1MB3 1562 + 1478 1521 94390 43 chain 115681 chr8 145138636 + 29304071 29305476 LTR12C 1709 + 0 1709 16289 525 6 5 280 0 200 102 1 0 4 4 2 106 0 4 93 0 2 79 0 102 101 0 1 13 7 6 84 chain 62389 chr8 145138636 + 29311283 29312199 LTR12C 1709 + 0 831 25779 294 8 8 268 0 2 26 0 1 100 135 85 38 38 0 9 chain 816 chr8 145138636 + 29311979 29312114 LTR12C 1709 + 1018 1150 30874 94 1 0 4 4 2 32 chain 230 chr8 145138636 + 29312152 29312190 LTR12C 1709 + 1188 1230 30874 36 0 4 2 chain 2230 chr8 145138636 + 29312199 29312568 LTR12C 1709 + 1239 1709 30874 153 0 102 127 5 4 84 chain 49773 chr8 145138636 + 29319549 29320107 LTR6B 557 + 0 557 29649 359 0 1 41 2 0 156 chain 45248 chr8 145138636 + 29359790 29360343 MER41A 554 + 0 553 31453 553 chain 32131 chr8 145138636 + 29389631 29389989 L1PA4 6152 + 5791 6151 40243 36 0 3 68 1 0 253 chain 39569 chr8 145138636 + 29415127 29415658 MER41A 554 + 0 554 34981 197 1 0 5 14 15 63 3 25 121 1 2 126 chain 43589 chr8 145138636 + 29447810 29448363 MER41A 554 + 0 554 32390 367 0 1 186 chain 540451 chr8 145138636 + 29449215 29455343 L1PA5 6144 + 5 6138 1311 1428 5 4 1133 0 1 672 0 4 856 0 1 676 0 2 512 2 0 844 chain 10845 chr8 145138636 + 29469832 29470196 MLT1A1 405 + 0 363 68786 24 205 209 51 5 0 79 chain 36821 chr8 145138636 + 29506164 29506626 LOR1a 498 + 11 473 36869 462 chain 29285 chr8 145138636 + 29533115 29533468 HERVL-int 5654 + 0 353 42918 353 chain 77147 chr8 145138636 + 29541986 29542887 MER11D 897 + 0 897 22274 272 24 17 434 1 4 170 chain 73720 chr8 145138636 + 29600323 29601123 L1PA3long 6157 + 5342 6142 23163 800 chain 39380 chr8 145138636 + 29609455 29610004 PABL_A 660 + 0 578 35097 24 0 15 16 1 5 21 0 9 178 21 39 199 20 3 69 chain 33019 chr8 145138636 + 29613697 29614207 LTR12 884 + 0 784 39502 25 2 1 34 6 47 8 1 0 24 11 0 45 1 0 60 0 114 20 2 0 64 1 0 172 1 104 18 2 35 13 chain 17537 chr8 145138636 + 29638777 29639020 L1PA8 5853 + 5613 5852 59197 65 2 1 6 8 0 8 0 7 40 2 1 19 1 0 92 chain 28102 chr8 145138636 + 29670572 29671062 MER1A 529 + 0 521 44714 38 26 59 37 8 14 22 3 0 5 26 29 239 34 26 52 chain 8991 chr8 145138636 + 29672569 29672697 MER85 139 + 0 139 72576 49 0 1 45 6 16 28 chain 20719 chr8 145138636 + 29706435 29706698 THE1D-int 1627 + 1358 1619 55470 198 1 0 21 1 0 42 chain 6404 chr8 145138636 + 29730862 29730930 MER41A 554 + 399 467 79659 68 chain 186177 chr8 145138636 + 29762422 29764484 L1PA3long 6157 + 4081 6144 10286 1399 0 2 526 1 0 136 chain 20515 chr8 145138636 + 29872912 29873267 THE1C 375 + 0 375 55770 19 2 0 28 0 6 10 9 19 6 9 0 91 0 4 15 41 51 69 0 1 56 chain 50050 chr8 145138636 + 29901924 29902724 L1PA10 4194 + 324 1114 29545 11 2 0 21 1 0 7 1 0 11 16 2 18 1 0 9 1 0 85 2 0 134 2 1 151 0 6 40 1 5 93 73 76 120 chain 264742 chr8 145138636 + 29912141 29915423 L1PA8A 6298 + 2957 6261 7831 93 0 1 308 8 7 33 2 0 411 1 0 4 0 1 56 0 1 572 0 2 371 12 12 106 1 18 49 0 1 489 3 0 50 15 16 12 4 7 510 1 0 78 0 2 16 0 1 13 0 1 4 1 0 59 chain 3660 chr8 145138636 + 29945155 29945199 MADE1 96 + 49 93 93914 44 chain 15453 chr8 145138636 + 29963053 29963245 MER2 342 + 103 295 61720 192 chain 44480 chr8 145138636 + 29983603 29984157 MLT2A2 560 + 3 560 31839 200 0 1 91 0 1 206 1 2 56 chain 3179 chr8 145138636 + 29988664 29988734 MADE1 96 - 6 96 98112 24 8 28 38 chain 50733 chr8 145138636 + 30006054 30007213 MER4A 717 + 0 713 29299 121 4 0 133 2 9 7 0 5 43 1 0 75 16 14 22 451 0 184 3 0 5 2 5 90 chain 39612 chr8 145138636 + 30015195 30015722 MER9a3 513 + 0 513 34952 18 0 2 80 10 11 17 26 9 119 1 0 178 0 1 78 chain 28746 chr8 145138636 + 30035256 30035666 LTR7 482 + 0 482 43712 69 8 46 109 8 40 155 15 17 46 chain 20069 chr8 145138636 + 30045447 30045740 AluYb8 318 + 27 313 56295 30 8 6 68 0 1 5 22 25 140 9 0 11 chain 3594 chr8 145138636 + 30048932 30048976 LTR52 417 + 12 55 94481 10 1 0 33 chain 34678 chr8 145138636 + 30068145 30068644 MER1A 529 + 43 524 38233 84 9 8 218 2 3 8 0 1 85 35 16 58 chain 7531 chr8 145138636 + 30087026 30087118 MER2 342 + 131 222 76045 44 1 0 47 chain 87674 chr8 145138636 + 30087969 30089243 LTR12D 1347 + 0 1347 20103 209 7 0 98 140 69 79 0 1 80 0 32 86 0 2 38 0 41 88 0 1 181 18 92 250 chain 5839 chr8 145138636 + 30089810 30089917 MER4A 717 + 97 176 81739 28 28 0 51 chain 26391 chr8 145138636 + 30160145 30160509 THE1C 375 + 0 364 47133 87 0 1 91 0 2 5 23 21 142 1 0 15 chain 59433 chr8 145138636 + 30200548 30201293 MER4E1 777 + 17 770 26522 516 9 17 220 chain 3660 chr8 145138636 + 30250651 30250703 MADE1 96 + 28 96 93913 14 1 17 37 chain 25502 chr8 145138636 + 30259104 30259451 THE1B 368 + 0 368 48480 44 0 15 36 0 1 69 8 7 15 6 10 6 0 1 87 0 1 76 chain 9507 chr8 145138636 + 30264894 30265003 MSTB 430 + 13 122 71457 109 chain 57211 chr8 145138636 + 30293308 30294197 L1PB1 5432 + 4583 5427 27191 40 2 0 174 0 1 4 2 0 8 3 0 292 0 1 10 8 1 24 1 0 6 1 0 12 2 0 3 2 0 9 2 0 52 18 16 45 1 0 15 70 53 21 1 0 21 1 0 13 1 0 12 1 0 7 1 0 4 chain 27983 chr8 145138636 + 30312566 30312921 THE1A 353 + 0 353 44896 110 1 0 92 1 0 151 chain 15054 chr8 145138636 + 30364974 30365227 MER44A 345 + 68 331 62201 33 0 10 75 7 13 69 11 9 17 12 8 29 chain 19210 chr8 145138636 + 30395246 30395486 AluJb 308 + 58 307 57337 67 0 6 128 0 3 45 chain 17448 chr8 145138636 + 30456693 30456921 AluSg7 307 + 54 281 59297 68 2 1 8 0 1 70 1 0 79 chain 26671 chr8 145138636 + 30534773 30535060 AluYb8 318 + 35 318 46728 83 4 0 200 chain 23188 chr8 145138636 + 30584919 30585188 AluSp 311 + 10 284 52097 7 0 5 262 chain 34396 chr8 145138636 + 30609538 30611084 L1MB2 1706 + 125 1475 38431 36 5 9 55 444 40 25 23 26 36 352 47 50 65 61 20 0 1 5 1 0 13 1 6 31 3 18 76 16 19 29 37 43 18 1 0 71 7 4 24 0 484 45 6 7 51 chain 4661 chr8 145138636 + 30643688 30643743 U5 65 + 0 55 87474 55 chain 13060 chr8 145138636 + 30660614 30660799 MER51A 677 + 0 176 65009 64 4 0 71 0 1 4 1 0 4 5 0 32 chain 8372 chr8 145138636 + 30695543 30695656 MER30 238 + 128 238 73965 66 4 1 43 chain 44304 chr8 145138636 + 30728580 30729079 LTR2C 499 + 0 499 31944 499 chain 300263 chr8 145138636 + 30730169 30733675 HERVE-int 4064 + 0 3482 6820 465 0 2 343 0 1 21 8 7 121 0 1 4 1 0 553 0 1 14 26 1 619 2 1 52 0 1 4 3 4 308 7 6 873 2 0 80 chain 3726 chr8 145138636 + 30814211 30814267 LTR39 781 + 642 699 93426 40 5 6 11 chain 4694 chr8 145138636 + 30852607 30852673 L1PB1 5432 + 5351 5414 87296 19 1 0 21 1 0 13 1 0 10 chain 25649 chr8 145138636 + 30885197 30885544 THE1B 368 + 0 345 48244 13 2 0 30 0 5 124 3 2 18 2 0 103 2 0 50 chain 40346 chr8 145138636 + 30925437 30926089 LTR15 485 + 1 485 34414 57 0 1 283 173 4 139 chain 5855 chr8 145138636 + 30955342 30955416 MLT1B 390 + 315 390 81670 62 0 1 12 chain 4922 chr8 145138636 + 30974979 30975036 L1MB8 1703 + 1531 1588 86044 57 chain 5233 chr8 145138636 + 31070113 31070190 MADE1 96 + 0 96 84535 30 6 25 41 chain 5186 chr8 145138636 + 31177156 31177260 MER51A 677 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L1PA8 5853 + 5215 5853 30782 152 1 7 190 1 0 44 6 4 66 2 1 14 9 8 10 0 3 21 7 6 16 7 6 90 chain 117011 chr8 145138636 + 31489674 31491155 LTR12C 1709 + 0 1709 16052 266 30 20 172 7 3 11 0 3 244 0 118 140 1 0 12 0 129 106 11 4 481 chain 61511 chr8 145138636 + 31509607 31510301 L1PA5 6144 + 3449 4143 25983 694 chain 19034 chr8 145138636 + 31551137 31551496 THE1B 368 + 0 368 57516 13 2 0 34 17 23 98 29 32 13 29 31 62 1 0 4 1 2 56 chain 387821 chr8 145138636 + 31566107 31570533 L1PA4 6152 + 0 5176 5360 978 4 747 72 0 1 522 1 0 125 0 4 720 1 2 601 0 1 848 0 1 7 1 0 504 0 1 42 chain 15264 chr8 145138636 + 31631839 31632836 L1PA3long 6157 + 5170 6155 61960 523 12 0 462 chain 25728 chr8 145138636 + 31689937 31690307 THE1C 375 + 0 375 48128 108 2 3 38 0 2 32 13 13 105 8 10 64 chain 90196 chr8 145138636 + 31760131 31761461 L1PA3long 6157 + 4840 6157 19648 222 14 0 1090 0 1 4 chain 27249 chr8 145138636 + 31770473 31770768 L1PA5 6144 + 5840 6135 45895 295 chain 16794 chr8 145138636 + 32093046 32093253 LTR5_Hs 974 + 0 207 60039 207 chain 3934 chr8 145138636 + 32093259 32093301 LTR5B 1012 + 970 1012 91872 42 chain 453139 chr8 145138636 + 32171360 32176529 L1PA4 6152 + 0 5192 4300 1147 0 5 84 0 1 368 1 2 178 1 0 717 3 4 402 0 7 350 0 2 285 0 1 1186 0 5 251 0 1 196 chain 4227 chr8 145138636 + 32188437 32188645 MLT1D 503 + 24 213 89956 37 2 0 5 119 113 26 11 0 8 chain 21388 chr8 145138636 + 32188727 32188970 L1PA3long 6157 + 5913 6157 54648 98 1 2 144 chain 8340 chr8 145138636 + 32256495 32256599 5S 121 + 0 99 74059 74 0 1 17 6 0 7 chain 3793 chr8 145138636 + 32412481 32412521 MLT2B4 540 + 500 540 92908 40 chain 11357 chr8 145138636 + 32523195 32523346 Charlie1 1172 + 798 950 68000 102 1 2 48 chain 23752 chr8 145138636 + 32527082 32527496 L1PB4 2604 + 2180 2570 51192 134 11 10 31 0 3 28 57 31 94 1 0 20 1 2 8 0 1 6 7 6 16 chain 12097 chr8 145138636 + 32563059 32563230 MER30 238 + 41 229 66668 65 7 0 6 5 29 88 chain 93124 chr8 145138636 + 32810104 32811219 L1PA7 6471 + 5335 6467 19168 168 1 3 116 0 7 71 0 2 288 0 3 314 0 1 148 0 2 9 chain 150629 chr8 145138636 + 32818064 32819664 L1HS 6032 + 2601 4201 12309 1600 chain 82002 chr8 145138636 + 32876779 32877790 MER11B 1079 + 0 1042 21242 65 0 11 183 3 0 57 1 18 436 2 4 241 7 11 16 chain 25261 chr8 145138636 + 32891716 32891996 L1PA4 6152 + 5871 6151 48847 280 chain 46034 chr8 145138636 + 33022533 33023122 LTR10C 591 + 0 591 31046 89 4 0 80 1 0 335 4 6 13 6 11 57 chain 98442 chr8 145138636 + 33030531 33031744 L1PA7 6471 + 5254 6451 18485 4 1 0 286 1 0 4 0 1 67 8 0 226 5 3 142 0 3 163 1 0 125 7 0 173 chain 32688 chr8 145138636 + 33038542 33038996 LTR10F 562 + 0 562 39776 105 2 86 15 0 31 176 7 3 82 4 2 44 2 1 17 chain 144333 chr8 145138636 + 33052234 33054318 L1PA10 4194 + 2031 4138 12747 77 34 34 78 0 6 46 6 10 52 0 1 206 9 8 23 0 4 31 7 5 55 0 8 280 16 1 172 28 43 122 3 6 21 0 4 9 1 0 4 55 49 57 1 4 157 0 2 475 14 15 13 12 9 20 chain 19269 chr8 145138636 + 33066506 33066793 L1PA13 3608 + 3219 3497 57270 54 2 0 6 1 0 57 1 0 55 9 6 46 2 0 5 2 0 20 1 0 20 0 3 6 chain 35461 chr8 145138636 + 33110468 33110918 MER4A1 472 + 0 472 37747 33 1 0 197 0 22 71 0 1 148 chain 217745 chr8 145138636 + 33188406 33191310 L1PA7 6471 + 3868 6459 9101 1361 0 1 123 0 1 8 0 1 6 1 0 128 0 1 122 2 1 18 0 1 60 0 2 142 323 0 474 0 5 136 chain 3375 chr8 145138636 + 33191576 33191615 MER5B 177 + 11 50 96345 39 chain 5799 chr8 145138636 + 33255218 33255298 MADE1 96 + 0 96 81925 45 2 18 33 chain 60960 chr8 145138636 + 33262597 33263247 L1HS 6032 + 4564 5214 26119 650 chain 240107 chr8 145138636 + 33299675 33303190 L1PBa 3878 + 29 3549 8468 10 2 0 9 3 0 12 3 0 3 1 0 8 19 14 5 2 0 10 2 1 15 91 85 12 1 0 24 2 0 6 28 12 267 17 16 205 36 35 206 4 3 109 4 6 78 1 0 122 0 11 7 46 58 78 0 5 142 21 20 24 6 8 4 1 0 135 0 1 241 0 6 176 18 19 11 0 1 417 0 9 32 0 3 12 0 1 146 0 1 170 4 0 187 1 0 75 0 3 244 chain 56100 chr8 145138636 + 33303505 33304188 L1PA8A 6298 + 5608 6291 27537 569 0 1 4 5 4 105 chain 15510 chr8 145138636 + 33304366 33304723 L1PB1 5432 + 5108 5430 61635 6 3 0 23 1 0 5 22 17 8 2 0 52 1 0 10 8 7 44 1 0 13 10 7 13 9 0 14 2 0 5 1 0 5 10 9 24 1 0 22 3 2 10 1 0 14 2 0 12 chain 173904 chr8 145138636 + 33305448 33307420 L1PA5 6144 + 4144 6129 10899 197 0 4 673 0 1 215 0 1 57 0 6 512 0 1 318 chain 41943 chr8 145138636 + 33308539 33309351 LTR66 600 + 0 552 33397 324 69 13 65 226 23 48 1 0 79 chain 5592 chr8 145138636 + 33308864 33308926 LTR66 600 + 340 402 82841 62 chain 5881 chr8 145138636 + 33309001 33309067 LTR66 600 + 335 401 81550 66 chain 5880 chr8 145138636 + 33309074 33309141 LTR66 600 + 337 404 81553 67 chain 5187 chr8 145138636 + 33335437 33335519 MER63C 923 - 258 351 84745 23 15 26 44 chain 6573 chr8 145138636 + 33358625 33358721 MLT1A0 366 + 62 151 79064 75 8 1 13 chain 385616 chr8 145138636 + 33361939 33366412 L1PA6 6164 + 1669 6161 5389 365 12 11 168 0 2 119 3 1 420 0 2 432 0 1 705 1 0 472 0 8 196 0 5 198 0 1 537 0 4 481 2 1 209 1 2 152 chain 45396 chr8 145138636 + 33367105 33367619 MER9a2 513 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33653009 THE1C 375 + 0 179 67795 30 1 0 17 0 6 17 15 16 93 chain 22206 chr8 145138636 + 33659532 33659866 THE1B 368 + 23 368 53545 120 0 2 24 1 0 29 41 51 119 chain 6621 chr8 145138636 + 33766668 33766984 L1MB7 1623 + 1059 1337 78896 79 214 177 8 1 0 14 chain 15285 chr8 145138636 + 33791464 33791828 L1PB1 5432 + 5106 5423 61931 8 15 0 24 1 0 4 3 2 14 5 1 9 2 0 52 2 1 16 8 7 37 1 0 9 32 20 14 6 4 4 1 0 14 2 0 24 1 0 22 1 0 12 1 0 15 1 0 4 chain 22386 chr8 145138636 + 33913619 33914003 THE1D 372 + 0 368 53296 53 61 44 84 17 19 25 1 0 5 0 1 4 1 0 133 chain 25081 chr8 145138636 + 33921790 33922148 THE1B 368 + 0 368 49148 60 9 23 86 1 0 40 1 5 24 11 4 126 chain 33392 chr8 145138636 + 33927819 33928264 L1PA8 5853 + 5383 5821 39184 181 1 0 44 2 0 11 1 0 39 0 1 25 6 4 52 2 1 16 4 3 61 chain 12784 chr8 145138636 + 33952799 33952955 L1PREC2 3366 + 2540 2693 65465 77 3 0 76 chain 18803 chr8 145138636 + 33960043 33960286 MER75B 242 + 0 242 57777 28 0 2 29 0 1 156 4 0 26 chain 3853 chr8 145138636 + 33968308 33968355 L1MA5A 2387 + 2248 2295 92481 47 chain 5010 chr8 145138636 + 34013649 34013706 MLT1B 390 + 288 345 85610 57 chain 35098 chr8 145138636 + 34037449 34037835 L1P1 4361 + 3218 3606 37959 57 0 2 329 chain 467723 chr8 145138636 + 34054781 34060110 L1PA4 6152 + 1 5333 3914 1182 0 1 1755 0 1 1145 1 2 1246 chain 7119 chr8 145138636 + 34060944 34061057 L1PB2 3958 + 975 1081 77196 44 14 7 55 chain 18409 chr8 145138636 + 34145747 34146110 THE1B 368 + 0 368 58223 111 0 3 6 6 4 53 88 93 36 7 6 56 chain 392452 chr8 145138636 + 34175919 34181316 L1PB1 5432 + 34 5424 5278 12 14 13 40 10 12 109 0 1 391 0 1 142 0 4 7 0 3 209 9 8 410 1 0 6 8 0 8 23 17 468 0 4 68 0 5 7 7 1 380 1 0 141 1 0 155 0 1 543 4 6 244 2 1 281 1 0 16 13 18 214 6 8 7 2 0 139 1 2 215 0 2 184 5 4 70 0 5 12 0 1 76 1 4 6 1 0 89 1 0 139 0 8 95 1 2 4 1 0 49 13 13 20 1 0 11 18 13 10 3 1 51 2 1 16 1 0 25 12 14 4 1 0 16 1 0 4 18 8 7 0 1 4 1 0 7 3 1 4 1 0 14 2 0 24 1 0 17 1 4 13 1 0 16 1 0 4 chain 68727 chr8 145138636 + 34212463 34213227 L1PA4 6152 + 5379 6143 24277 764 chain 551850 chr8 145138636 + 34214932 34221075 L1PA3long 6157 + 6 6157 614 30 8 0 422 0 1 171 0 1 320 0 4 781 0 1 215 1 0 744 0 1 559 0 3 1534 0 2 515 0 4 843 chain 332693 chr8 145138636 + 34297277 34301410 L1P3 4156 + 3 4139 6174 243 6 5 71 1 0 84 1 0 146 0 1 57 2 4 450 1 2 154 0 1 207 0 1 4 1 0 467 0 3 524 0 3 198 0 2 68 7 3 748 0 5 8 6 1 335 10 10 296 14 11 24 chain 5131 chr8 145138636 + 34317407 34317485 MADE1 96 + 2 96 85012 29 5 20 11 0 1 33 chain 5344 chr8 145138636 + 34409526 34409602 MADE1 96 + 0 95 83980 30 1 18 21 0 1 15 0 1 9 chain 2739 chr8 145138636 + 34422755 34422804 MER58C 217 + 77 139 102050 33 2 15 14 chain 351745 chr8 145138636 + 34438302 34443517 L1P2 5180 + 3 5164 5895 142 6 5 13 131 138 17 192 5 31 34 7 15 37 33 37 18 0 58 0 1 5 47 40 11 20 9 171 21 0 46 4 7 6 0 12 104 1 5 19 7 27 4 1 0 73 0 1 4 1 0 350 0 1 722 2 0 203 18 45 387 3 0 5 20 169 239 2 3 7 1 0 32 5 0 400 0 1 335 0 1 349 0 2 54 0 4 82 0 1 240 3 4 48 0 1 352 6 5 45 1 0 28 chain 25350 chr8 145138636 + 34489446 34489813 THE1B 368 + 0 368 48707 15 2 0 25 0 5 62 6 5 60 2 1 19 2 0 68 4 6 102 chain 382283 chr8 145138636 + 34535417 34540356 L1P2 5180 + 13 4961 5442 137 1 0 44 1 0 50 18 17 185 19 0 70 1 0 47 1 0 224 0 15 529 21 19 516 7 8 74 0 1 46 0 4 325 4 0 173 30 30 680 1 2 23 6 10 374 4 5 72 0 4 75 0 1 206 22 15 331 1 0 287 0 10 72 8 9 111 0 4 143 chain 462926 chr8 145138636 + 34540425 34545754 L1PA5 6144 + 185 5508 4052 313 0 1 947 3 2 1029 4 3 439 0 2 546 0 1 34 1 0 519 19 12 1475 chain 64103 chr8 145138636 + 34589383 34590125 L1PA4 6152 + 3065 3829 25394 238 0 1 98 0 6 34 0 12 226 1 0 3 1 0 21 0 2 115 0 3 5 chain 15280 chr8 145138636 + 34613930 34614217 L1PB1 5432 + 5161 5420 61941 7 5 0 69 1 0 44 1 0 15 1 0 4 23 11 11 13 10 14 2 0 23 1 0 22 1 0 13 1 0 16 chain 100251 chr8 145138636 + 34725567 34726721 L1PA4 6152 + 3338 4482 18271 423 12 1 471 0 1 248 chain 403408 chr8 145138636 + 34739509 34744183 L1PA5 6144 + 1448 6132 5111 354 0 1 13 2 1 216 0 4 275 1 0 607 0 2 17 0 1 713 1 0 699 0 2 1466 0 2 9 17 17 150 1 2 133 chain 23623 chr8 145138636 + 34805257 34805572 THE1B 368 + 18 368 51392 26 10 39 53 0 8 30 1 0 120 1 0 74 chain 22117 chr8 145138636 + 34833331 34833941 MSTA-int 1630 + 1340 1630 53676 123 0 3 49 1 0 36 322 0 79 chain 6253 chr8 145138636 + 34882811 34882909 LTR12B 2670 + 2197 2294 80164 66 13 12 19 chain 54732 chr8 145138636 + 34895276 34895917 SVA_B 1603 + 994 1598 27960 33 37 0 571 chain 5487 chr8 145138636 + 34918358 34918419 Tigger2a 444 + 126 187 83288 61 chain 9137 chr8 145138636 + 34983194 34983655 MER30 238 + 61 238 72268 39 10 29 26 306 0 40 5 8 35 chain 19265 chr8 145138636 + 34991182 34991404 L1PA7 6471 + 6246 6469 57276 195 0 1 27 chain 28527 chr8 145138636 + 34998943 34999298 L1PA7 6471 + 6100 6457 44074 101 9 10 109 0 1 136 chain 4867 chr8 145138636 + 35026529 35026653 L1MA3 4352 + 4213 4328 86335 23 8 4 20 9 7 14 3 2 5 1 0 22 5 4 14 chain 56894 chr8 145138636 + 35053169 35053896 LTR12 884 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145138636 + 35805805 35805940 MER4B 649 + 0 143 78391 19 16 23 58 16 17 26 chain 164976 chr8 145138636 + 35811318 35813641 L1PA13 3608 + 959 3329 11413 94 1 0 67 15 18 155 5 9 23 0 3 6 0 13 48 11 15 103 0 4 288 1 2 21 0 1 105 1 2 20 0 4 12 0 4 265 0 1 55 0 3 34 0 1 75 2 10 308 0 1 44 32 0 8 0 27 6 1 6 250 0 6 49 32 17 18 7 6 14 2 1 4 0 1 42 0 4 41 2 0 56 chain 40346 chr8 145138636 + 35814244 35814786 MLT2A2 560 + 6 560 34415 177 34 35 184 0 11 147 chain 312470 chr8 145138636 + 35817860 35822157 L1PA8 5853 + 1557 5853 6563 63 7 5 281 1 3 114 25 0 29 9 1 312 0 6 86 0 33 44 6 10 14 9 5 199 0 5 102 9 2 34 14 10 41 0 3 9 0 3 5 1 0 106 0 1 4 1 0 111 0 4 23 4 5 35 1 0 6 0 2 121 7 6 50 0 1 166 1 0 5 0 1 287 17 21 339 2 0 287 0 9 304 1 0 134 3 0 6 0 2 82 11 10 49 22 22 19 1 2 368 1 0 46 2 0 59 0 2 7 4 1 7 1 0 8 0 8 27 23 0 28 5 4 92 chain 21485 chr8 145138636 + 35823839 35824147 AluY 311 + 18 287 54530 104 35 0 11 14 10 144 chain 36787 chr8 145138636 + 35855690 35856309 L1PBa1 4058 + 3441 4040 36894 114 11 15 37 0 6 52 1 0 7 1 0 29 1 0 11 2 1 29 2 0 108 3 1 18 1 0 9 3 0 5 3 0 6 8 6 19 2 1 4 1 0 4 3 0 21 34 28 10 1 0 16 1 0 42 chain 4580 chr8 145138636 + 35914101 35914155 L1PA8 5853 + 5510 5564 87908 54 chain 4021 chr8 145138636 + 35914156 35914202 L1PA8 5853 + 5564 5610 91299 46 chain 16813 chr8 145138636 + 35914204 35914451 L1PA8 5853 + 5610 5853 60017 65 5 4 11 1 0 46 9 8 16 2 1 92 chain 379407 chr8 145138636 + 35932543 35937232 HERV9-int 5642 + 0 4814 5495 600 3 0 118 6 0 11 0 1 61 1 0 57 5 3 241 80 0 9 3 0 6 11 3 4 0 1 68 0 53 8 1 0 847 2 5 329 8 11 147 0 1 13 0 10 148 0 4 22 1 0 248 0 1 676 6 160 854 1 0 94 chain 9675 chr8 145138636 + 35938946 35939117 LTR12 884 + 169 378 71108 94 49 87 28 chain 14918 chr8 145138636 + 35969302 35969587 L1MA5A 2387 + 2046 2288 62369 23 1 0 39 1 0 48 2 0 24 15 1 16 0 2 14 11 8 11 24 0 56 chain 111441 chr8 145138636 + 35994667 35996041 L1PA7 6471 + 3857 5255 16885 89 0 1 5 1 0 57 6 1 200 0 2 662 0 19 198 0 6 32 0 1 77 1 2 46 chain 476274 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+ 29 769 28055 200 4 5 34 0 4 146 6 15 109 1 8 77 1 0 111 41 5 26 chain 408068 chr8 145138636 + 36224292 36229889 L1PA8 5853 + 496 5853 5044 148 0 5 6 0 1 6 0 1 97 9 10 380 1 0 4 1 2 306 0 1 98 3 4 191 231 0 226 0 1 641 4 8 104 4 5 350 4 13 181 6 7 615 0 2 484 38 0 19 6 15 59 7 1 34 0 2 165 1 0 319 0 2 46 0 3 24 19 16 181 5 7 276 1 0 46 2 0 71 1 0 44 2 1 16 2 1 19 2 1 92 chain 2557 chr8 145138636 + 36259690 36259721 L1PA7 6471 + 4926 4957 103336 31 chain 125694 chr8 145138636 + 36259722 36261229 L1PA7 6471 + 4957 6470 14600 664 2 0 18 1 0 497 3 4 22 0 7 144 0 1 156 chain 22625 chr8 145138636 + 36321554 36321825 AluY 311 + 40 308 52948 99 7 4 165 chain 3134 chr8 145138636 + 36364589 36364626 MER5A1 166 + 98 136 98515 32 0 1 5 chain 3840 chr8 145138636 + 36414533 36414581 MER58A 224 + 175 223 92565 48 chain 5557 chr8 145138636 + 36414881 36414949 Arthur1B 1073 + 566 634 83005 68 chain 47872 chr8 145138636 + 36459524 36460087 L1PA7 6471 + 5893 6457 30336 200 0 1 363 chain 69193 chr8 145138636 + 36471052 36471808 L1PA4 6152 + 5384 6140 24181 756 chain 162048 chr8 145138636 + 36479659 36481425 L1PA2 6032 + 4261 6026 11611 1751 1 0 14 chain 19484 chr8 145138636 + 36524625 36524876 L1PA8 5853 + 5358 5608 57051 206 2 1 43 chain 18587 chr8 145138636 + 36524878 36525125 L1PA8 5853 + 5608 5853 58009 70 2 1 65 2 1 108 chain 275440 chr8 145138636 + 36529590 36533266 HERVL-int 5654 + 0 5654 7571 625 0 1 444 23 0 108 1 0 542 1 0 302 0 1 223 1 2 251 0 1 34 166 0 293 35 6 142 0 1 86 0 1 69 0 25 70 3 2187 68 29 12 160 chain 11445 chr8 145138636 + 36532150 36532277 HERVL-int 5654 + 2372 2499 67843 127 chain 2946 chr8 145138636 + 36533320 36533355 MLT2A1 477 + 341 376 100451 35 chain 26397 chr8 145138636 + 36550381 36550764 MER57B1 401 + 0 401 47126 55 0 2 28 11 13 117 16 28 36 0 1 11 0 2 50 1 0 58 chain 3835 chr8 145138636 + 36573148 36573190 MIR 256 + 149 191 92598 42 chain 3351 chr8 145138636 + 36642686 36643073 L1MD 993 + 360 775 96582 24 329 357 34 chain 503012 chr8 145138636 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0 10 1 18 44 chain 71952 chr8 145138636 + 37109553 37110731 L1PREC2 3366 + 1820 3046 23557 194 0 1 447 0 1 100 0 76 70 0 1 6 1 0 30 7 6 14 25 35 5 1 0 33 102 83 26 40 23 31 12 10 34 chain 53592 chr8 145138636 + 37191910 37192497 L1PA4 6152 + 5554 6141 28363 587 chain 32597 chr8 145138636 + 37241341 37241889 L1PB1 5432 + 4905 5420 39867 194 17 15 20 1 0 12 1 0 10 6 2 9 2 0 53 18 16 45 1 0 15 1 0 4 2 0 8 9 0 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 488599 chr8 145138636 + 37279058 37285324 L1PA8A 6298 + 41 6262 3453 15 14 1 6 0 7 8 6 1 19 3 0 26 14 5 18 2 1 8 3 2 9 13 11 9 2 0 17 2 0 4 1 0 13 1 0 8 1 0 6 1 0 8 1 0 15 14 8 62 6 0 79 3 1 23 6 4 342 4 5 263 1 0 77 4 1 8 0 5 94 1 0 249 3 4 181 0 1 241 0 6 94 1 0 38 0 1 301 0 1 152 4 2 117 0 3 163 0 9 377 0 1 195 1 0 37 1 2 76 1 0 934 1 0 408 2 0 112 0 1 178 0 1 10 0 1 322 0 1 40 2 1 437 0 8 94 22 1 232 chain 4674 chr8 145138636 + 37300682 37300739 MLT1G1 539 + 0 57 87421 57 chain 24921 chr8 145138636 + 37362564 37362907 L1PA8 5853 + 5517 5853 49397 47 1 0 44 2 0 69 3 2 10 1 0 51 2 1 19 1 0 93 chain 20008 chr8 145138636 + 37373280 37373519 AluSc 308 + 19 258 56376 239 chain 42499 chr8 145138636 + 37426057 37426599 MLT2A2 560 + 0 552 33061 180 1 0 219 3 14 139 chain 554245 chr8 145138636 + 37460287 37466392 L1PA3long 6157 + 6 6157 465 806 0 1 921 0 4 373 5 0 151 0 40 475 0 1 917 1 0 662 0 4 1025 0 2 769 chain 37965 chr8 145138636 + 37485670 37486095 L1PA5 6144 + 5714 6140 36095 320 0 1 105 chain 15797 chr8 145138636 + 37525875 37526200 L1PB1 5432 + 5127 5420 61288 7 1 0 12 1 0 10 2 0 3 2 0 8 2 0 53 2 1 9 7 6 44 1 0 16 3 0 6 17 7 14 20 17 6 2 0 24 1 0 21 1 0 13 1 0 16 chain 6447 chr8 145138636 + 37617789 37618044 L1MA4 2864 + 2586 2801 79522 57 2 0 10 7 9 13 140 100 26 chain 14141 chr8 145138636 + 37629039 37629338 L1PB1 5432 + 5146 5416 63393 12 5 1 8 2 0 53 2 1 15 1 0 41 9 8 11 4 0 6 16 6 19 14 13 6 2 0 24 1 0 21 1 0 13 1 0 12 chain 12921 chr8 145138636 + 37639844 37640010 L1PA8 5853 + 5688 5853 65220 8 1 0 4 0 1 59 1 0 93 chain 20872 chr8 145138636 + 37687015 37687477 L1PB1 5432 + 5039 5427 55290 64 50 15 20 2 0 9 1 0 11 5 1 9 2 0 44 13 12 13 4 3 41 1 0 15 2 0 6 17 10 15 2 0 5 1 0 14 2 0 24 1 0 21 1 0 10 9 0 21 2 0 5 chain 20815 chr8 145138636 + 37687492 37687749 AluSp 311 + 1 295 55340 108 0 2 39 1 36 109 chain 145842 chr8 145138636 + 37927082 37928711 SVA_D 2077 + 0 2077 12627 19 5 0 11 2 0 114 0 3 743 0 396 28 0 1 30 0 2 4 0 1 5 0 49 48 0 1 211 0 2 409 chain 25817 chr8 145138636 + 37982290 37984165 Tigger3b 1229 + 334 979 47995 204 1 2 21 1506 270 17 0 2 11 0 4 83 1 0 31 chain 28883 chr8 145138636 + 38004278 38004690 LTR7B 505 + 0 490 43509 108 0 10 28 0 2 27 0 38 12 5 29 24 0 2 82 1 0 79 14 13 14 3 7 15 chain 36413 chr8 145138636 + 38009014 38009607 MER50B 698 + 0 617 37132 47 9 5 52 3 4 56 5 6 37 11 37 20 1 0 19 0 1 82 0 1 84 4 0 13 47 51 21 3 2 79 chain 9682 chr8 145138636 + 38024516 38024642 MER2 342 + 109 240 71095 32 1 6 93 chain 42616 chr8 145138636 + 38024642 38025223 MER4B 649 + 0 633 32992 30 3 0 65 3 2 60 1 43 93 2 1 49 1 16 274 chain 6882 chr8 145138636 + 38039191 38039271 MER30 238 + 156 236 78021 80 chain 7942 chr8 145138636 + 38039307 38039402 MER47B 469 + 298 393 75015 95 chain 53371 chr8 145138636 + 38093581 38095929 THE1C-int 1605 + 0 1594 28449 12 4 6 136 0 2 173 0 6 89 1585 814 33 0 3 23 0 3 6 4 5 40 1 2 49 1 0 192 chain 48422 chr8 145138636 + 38133803 38134334 SVA_C 1631 + 1096 1627 30140 531 chain 4579 chr8 145138636 + 38180679 38180832 MER5A1 166 + 0 163 87912 14 2 0 15 78 90 44 chain 25089 chr8 145138636 + 38225019 38225370 THE1C 375 + 0 354 49136 125 3 0 10 0 4 64 0 3 46 11 10 5 0 1 82 1 0 4 chain 6564 chr8 145138636 + 38229499 38229570 MER41B 635 + 481 552 79107 71 chain 40227 chr8 145138636 + 38478614 38479202 Tigger1 2417 + 1246 1830 34502 14 11 15 25 1 0 7 0 1 4 2 1 98 0 1 10 6 7 102 7 6 264 8 0 29 chain 24078 chr8 145138636 + 38491610 38491902 AluYk4 311 + 9 292 50687 117 5 0 150 5 1 15 chain 43003 chr8 145138636 + 38576563 38577406 MER41A 554 + 15 554 32768 280 0 3 126 321 14 116 chain 5144 chr8 145138636 + 38578087 38578261 MER5B 177 - 0 175 84940 25 97 98 52 chain 3730 chr8 145138636 + 38584976 38585016 MER53 195 - 122 162 93398 40 chain 151090 chr8 145138636 + 38592204 38594687 L1PBa1 4058 + 13 2165 12283 23 10 0 11 63 60 130 1 0 17 22 21 47 0 1 16 1 0 30 9 14 39 15 16 73 1 0 50 14 12 244 1 2 126 7 5 158 1 0 217 1 0 151 0 1 185 6 5 143 1 2 58 0 1 122 318 0 172 chain 55498 chr8 145138636 + 38594693 38595748 L1PB1 5432 + 4567 5387 27721 59 4 0 18 181 0 321 0 3 27 1 4 5 3 0 99 21 2 12 3 0 17 1 0 12 1 0 12 23 16 46 2 1 16 1 0 43 1 0 16 3 0 6 19 9 14 16 13 8 2 0 24 1 0 17 chain 16566 chr8 145138636 + 38594782 38594955 AluYb8 318 + 134 307 60296 173 chain 12259 chr8 145138636 + 38596195 38596350 MER2 342 + 140 295 66350 155 chain 44355 chr8 145138636 + 38624349 38625211 MER41A 554 + 0 554 31913 324 308 0 230 chain 4716 chr8 145138636 + 38643024 38643160 L1MC2 1988 + 1772 1988 87161 42 64 142 25 0 2 5 chain 45319 chr8 145138636 + 38652922 38653470 MER41A 554 + 0 554 31409 282 0 1 185 0 5 81 chain 77380 chr8 145138636 + 38660904 38661891 MER11A 1151 + 0 1147 22224 45 10 109 76 1 0 64 4 0 137 0 15 92 0 1 134 6 9 63 0 4 70 6 40 49 0 9 230 chain 7847 chr8 145138636 + 38708286 38708417 MER39B 650 + 263 396 75266 47 8 9 22 9 10 45 chain 112720 chr8 145138636 + 38719683 38721058 LTR12C 1709 + 0 1709 16722 267 1 26 45 0 43 83 0 1 187 0 278 109 4 0 73 1 0 112 11 4 393 5 4 84 chain 82523 chr8 145138636 + 38811436 38812512 MER11A 1151 + 0 1151 21116 35 5 20 24 7 15 200 0 11 377 6 9 12 1 2 38 0 4 115 3 0 5 0 35 92 12 13 27 4 1 35 0 4 13 1 0 64 chain 27628 chr8 145138636 + 38846010 38846313 AluYc3 301 + 0 301 45422 121 2 0 180 chain 42236 chr8 145138636 + 38866687 38867214 MER41A 554 + 11 554 33225 19 2 1 364 5 22 137 chain 2923 chr8 145138636 + 38869293 38869345 MER5A 189 + 135 188 100654 10 0 2 20 6 5 16 chain 53014 chr8 145138636 + 39012362 39012958 L1PA5 6144 + 5550 6142 28571 585 4 0 7 chain 21716 chr8 145138636 + 39121358 39121611 L1PA7 6471 + 6218 6470 54212 248 1 0 4 chain 3356 chr8 145138636 + 39121614 39121662 MLT-int 841 + 188 236 96538 13 1 0 4 0 1 30 chain 133719 chr8 145138636 + 39179932 39181535 LTR12C 1709 + 0 1709 13672 428 8 9 27 18 4 182 0 119 68 1 0 274 10 7 106 0 4 481 chain 15491 chr8 145138636 + 39244869 39245074 L1PB1 5432 + 4330 4536 61666 174 6 7 25 chain 7320 chr8 145138636 + 39245621 39245710 MLT1B 390 + 248 337 76600 89 chain 10379 chr8 145138636 + 39274704 39274850 Tigger3b 1229 + 39 186 69652 37 6 7 103 chain 33224 chr8 145138636 + 39308870 39309268 L1PA6 6164 + 5758 6156 39327 244 9 9 145 chain 6372 chr8 145138636 + 39342974 39343048 MER45B 1037 + 776 850 79770 74 chain 37803 chr8 145138636 + 39348816 39349338 MLT2A2 560 + 9 560 36205 114 13 0 57 1 0 128 6 38 56 0 11 147 chain 15272 chr8 145138636 + 39373730 39374069 L1PB1 5432 + 5114 5421 61950 20 1 0 12 1 0 10 2 0 3 2 0 9 2 0 52 2 1 15 1 0 37 48 35 18 3 1 5 1 0 14 2 0 24 1 0 23 1 0 11 2 1 10 1 0 6 chain 77943 chr8 145138636 + 39394575 39395445 L1PA4 6152 + 4644 5515 22114 497 0 1 373 chain 269827 chr8 145138636 + 39434059 39437727 L1PA10 4194 + 431 4161 7709 52 0 1 4 6 3 7 0 1 137 6 7 237 0 4 149 0 2 12 0 1 114 1 0 305 4 5 8 0 1 5 8 7 135 10 12 543 5 14 8 0 1 16 0 4 49 0 4 223 6 15 32 0 1 55 0 4 40 6 1 26 3 7 338 1 0 32 11 7 81 0 1 368 14 41 61 0 1 88 1 0 4 0 1 125 0 1 248 5 6 26 9 5 44 chain 86642 chr8 145138636 + 39449664 39450828 HUERS-P2-int 2744 + 1215 2357 20286 7 0 2 362 11 2 154 0 2 63 0 2 275 9 11 82 7 6 78 20 0 96 chain 22522 chr8 145138636 + 39461135 39461657 L1PB1 5432 + 4979 5427 53088 110 32 0 16 29 20 8 1 0 13 1 0 10 2 0 3 2 0 8 2 0 53 2 1 16 2 1 36 7 6 16 2 0 6 17 6 19 2 0 5 1 0 14 2 0 24 1 0 11 15 14 9 1 0 7 0 1 10 2 0 5 chain 68992 chr8 145138636 + 39481565 39482387 L1PA7 6471 + 5649 6459 24213 420 15 5 57 1 0 183 1 0 145 chain 36902 chr8 145138636 + 39535463 39535948 LTR15 485 + 0 482 36810 76 6 0 9 1 7 258 4 3 18 6 8 57 4 0 46 chain 74046 chr8 145138636 + 39578405 39579434 MER11A 1151 + 0 1151 23080 65 1 100 43 0 1 21 1 0 64 4 0 149 0 1 94 0 1 31 1 0 6 12 0 108 5 6 118 0 1 12 1 0 3 15 0 11 8 1 11 0 21 17 0 36 14 1 2 44 6 7 163 chain 70695 chr8 145138636 + 39589803 39590587 L1PA3long 6157 + 5365 6149 23827 784 chain 25714 chr8 145138636 + 39700865 39701146 AluYa5 310 + 33 310 48147 60 4 0 217 chain 194826 chr8 145138636 + 39712160 39714451 L1PA6 6164 + 3868 6161 9897 36 0 2 446 0 3 72 0 1 1106 0 1 365 0 1 250 6 0 10 chain 29722 chr8 145138636 + 39735362 39735768 L1P2 5180 + 2 405 42344 148 1 0 43 12 10 44 14 13 14 0 1 130 chain 40810 chr8 145138636 + 39736594 39737164 THE1B-int 1605 + 0 636 34089 163 7 9 95 4 8 121 1 65 48 1 0 21 6 3 103 chain 24332 chr8 145138636 + 39744469 39744800 L1PA8 5853 + 5529 5853 50283 35 1 0 45 2 0 70 4 3 16 1 0 42 2 1 19 1 0 93 chain 3786 chr8 145138636 + 39753768 39753811 L1PBa 3878 + 1565 1608 92948 43 chain 5136 chr8 145138636 + 39756109 39756186 MADE1 96 + 2 96 84985 33 3 20 41 chain 3730 chr8 145138636 + 39793855 39793930 MER21-int 1364 + 826 898 93406 28 12 14 24 5 0 6 chain 36428 chr8 145138636 + 39794433 39794894 LTR2 463 + 0 462 37121 359 15 16 87 chain 362564 chr8 145138636 + 39809748 39813927 L1PA5 6144 + 1945 6143 5775 238 2 1 129 2 1 180 0 1 661 0 1 7 3 0 6 1 0 319 0 11 829 0 3 547 3 8 75 0 2 1025 7 9 145 chain 42441 chr8 145138636 + 39870384 39870895 MER9a3 513 + 0 513 33102 39 0 1 234 9 10 229 chain 235215 chr8 145138636 + 39872253 39875482 HERVK9-int 4720 + 58 4720 8592 66 1 0 8 1 0 30 1 0 133 0 1 134 1 0 115 320 0 132 0 2 386 2 3 110 0 185 31 0 1 99 5 930 192 0 2 33 9 649 9 2 0 950 0 1 187 0 1 272 chain 43564 chr8 145138636 + 39875482 39876006 MER9a3 513 + 0 513 32405 13 9 0 265 0 1 41 5 0 134 0 2 57 chain 28313 chr8 145138636 + 39928451 39928749 AluYk11 308 + 0 298 44392 298 chain 44155 chr8 145138636 + 39944361 39944915 LTR6B 557 + 0 557 32046 43 5 4 312 0 1 121 22 24 29 0 1 22 chain 10495 chr8 145138636 + 39946656 39946783 LTR8 732 + 587 714 69425 127 chain 47287 chr8 145138636 + 39947230 39947783 LTR10C 591 + 0 555 30542 508 0 2 45 chain 3650 chr8 145138636 + 39968041 39968083 L1MC3 1789 + 105 147 94022 42 chain 21814 chr8 145138636 + 39968586 39968871 L1PA8 5853 + 5569 5848 54084 40 2 0 73 1 0 7 1 0 51 2 1 19 1 0 88 chain 10340 chr8 145138636 + 40022692 40022808 L1P2 5180 + 1013 1129 69714 116 chain 103017 chr8 145138636 + 40046479 40048071 L1PB1 5432 + 3852 5420 17949 76 4 0 64 0 1 55 38 9 170 0 1 149 0 1 6 0 10 140 1 0 86 1 0 7 13 15 287 0 1 77 6 32 7 0 1 5 1 0 51 7 4 7 1 0 24 1 0 5 31 24 53 2 1 15 0 1 12 0 1 26 5 4 16 1 0 4 61 46 24 1 0 21 1 0 13 1 0 16 chain 12825 chr8 145138636 + 40065907 40066093 L1PB4 2604 + 2386 2572 65406 110 5 6 50 1 0 20 chain 37466 chr8 145138636 + 40068611 40069048 L1PA6 6164 + 5732 6162 36427 280 7 0 150 chain 46325 chr8 145138636 + 40087333 40087960 LTR9B 643 + 0 629 30911 65 0 3 107 0 1 157 1 0 96 15 16 25 11 9 150 chain 31181 chr8 145138636 + 40136122 40136540 L1PA8 5853 + 5444 5853 40992 76 0 2 22 4 0 20 1 0 40 6 4 71 1 0 9 1 0 55 1 0 17 1 0 93 chain 2906 chr8 145138636 + 40147712 40147776 MIRc 230 + 117 195 100790 23 18 32 23 chain 46486 chr8 145138636 + 40176104 40176725 MER4B 649 + 1 628 30855 106 10 6 79 2 0 172 5 16 145 0 1 102 chain 4438 chr8 145138636 + 40183885 40183952 L1MC1 2226 + 1967 2029 88671 11 3 0 15 2 0 36 chain 134122 chr8 145138636 + 40242411 40244659 L1PB1 5432 + 3455 5413 13639 46 2 0 225 4 6 56 1 3 171 0 1 63 22 3 405 0 1 73 1 4 94 0 2 20 3 0 134 6 4 38 1 0 98 0 7 193 264 13 23 1 0 7 2 1 10 6 2 9 2 0 52 1 0 12 7 6 44 1 0 15 1 0 4 18 8 19 7 4 15 2 0 24 1 0 21 1 0 13 1 0 9 chain 3606 chr8 145138636 + 40254583 40254671 MER31B 477 + 103 243 94375 29 35 87 24 chain 63782 chr8 145138636 + 40325606 40326352 L1PA7 6471 + 5718 6464 25455 746 chain 3472 chr8 145138636 + 40368394 40368436 L1MB5 1630 + 6 48 95439 42 chain 30422 chr8 145138636 + 40368444 40368849 MSTA 426 + 7 426 41659 187 2 7 9 0 1 85 0 5 9 8 11 105 chain 558169 chr8 145138636 + 40432212 40438229 L1PA2 6032 + 0 6021 238 4865 0 5 906 1 0 245 chain 34566 chr8 145138636 + 40438290 40438673 L1PA3long 6157 + 5774 6157 38307 383 chain 20324 chr8 145138636 + 40550483 40550819 THE1D 372 + 0 330 55981 52 9 0 22 6 7 57 0 1 27 44 45 119 chain 10404 chr8 145138636 + 40552917 40553046 MER85 139 + 0 139 69605 92 0 10 37 chain 16424 chr8 145138636 + 40561669 40561890 MER30 238 + 0 238 60484 107 4 24 61 3 0 46 chain 93137 chr8 145138636 + 40615851 40616897 L1PA5 6144 + 5098 6144 19166 389 0 1 543 1 0 113 chain 549213 chr8 145138636 + 40647061 40653085 L1PA2 6032 + 0 6021 799 256 1 0 513 0 1 86 0 1 3791 4 0 1373 chain 13828 chr8 145138636 + 40699403 40699591 L1PB4 2604 + 2187 2374 63833 68 2 1 118 chain 7181 chr8 145138636 + 40701900 40702159 MSTD 398 + 0 308 77000 15 1 19 53 7 23 22 110 124 23 11 12 17 chain 38191 chr8 145138636 + 40721872 40722289 L1PA2 6032 + 4716 5133 35911 417 chain 14166 chr8 145138636 + 40737122 40737330 MER30 238 + 0 238 63360 17 5 23 68 4 19 63 3 0 48 chain 34067 chr8 145138636 + 40757717 40758227 MLT2A2 560 + 0 552 38657 76 0 1 83 2 0 23 0 22 5 23 0 13 10 11 74 6 38 53 3 14 139 chain 11098 chr8 145138636 + 40789491 40789714 L1MA3 4352 + 4142 4352 68413 94 28 22 21 14 12 26 1 0 9 8 4 22 chain 88941 chr8 145138636 + 40804965 40805939 L1PA3long 6157 + 5163 6147 19867 180 0 10 794 chain 83762 chr8 145138636 + 40861627 40862582 L1HS 6032 + 5076 6031 20857 955 chain 32819 chr8 145138636 + 40862598 40862981 L1PA5 6144 + 5761 6143 39651 240 0 1 130 3 1 10 chain 10667 chr8 145138636 + 40905065 40905203 L1PA8 5853 + 5717 5853 69104 23 2 1 19 2 1 92 chain 53013 chr8 145138636 + 40913074 40913658 L1PA4 6152 + 5564 6148 28572 584 chain 4677 chr8 145138636 + 40948633 40948728 L1MB3 1562 + 1443 1544 87393 11 2 5 6 2 0 42 0 6 11 5 4 16 chain 2696 chr8 145138636 + 40955563 40955602 Charlie1a 1436 + 244 281 102376 10 2 0 27 chain 17860 chr8 145138636 + 40960060 40960421 L1MA3 4352 + 4027 4352 58814 41 76 51 86 0 2 28 4 0 23 2 0 24 1 0 5 2 1 29 1 0 11 6 2 22 chain 455246 chr8 145138636 + 40964384 40969996 L1PA7 6471 + 666 6467 4252 401 1 16 185 12 11 501 0 1 404 0 174 161 0 4 92 0 1 23 0 1 292 0 1 456 0 1 36 1 0 49 9 10 42 0 1 208 6 2 498 33 32 402 0 4 139 0 1 117 0 1 19 5 0 662 0 2 45 7 8 297 0 1 166 1 2 4 1 0 157 3 0 5 28 24 134 2 0 8 chain 10831 chr8 145138636 + 41032216 41032454 MER30 238 + 0 238 68805 18 8 30 10 7 8 38 43 18 16 0 2 12 0 6 7 6 0 73 chain 125528 chr8 145138636 + 41032998 41034510 L1PA7 6471 + 4957 6470 14621 662 1 2 51 0 1 36 0 1 424 5 6 168 8 7 144 2 0 11 chain 264052 chr8 145138636 + 41049296 41053185 L1PBa 3878 + 29 3734 7853 9 3 0 7 5 3 12 29 21 4 1 0 5 2 0 10 1 0 37 78 28 48 8 0 3 142 0 21 2 0 12 4 6 267 1 0 183 5 1 51 0 1 116 0 21 85 1 0 79 0 1 554 4 3 6 0 1 48 5 4 30 7 1 215 0 3 60 0 4 34 1 0 16 0 1 326 0 6 44 0 1 39 13 13 105 3 4 25 3 6 32 0 1 63 0 3 307 21 19 17 1 3 166 3 0 131 7 8 66 0 3 306 chain 4976 chr8 145138636 + 41096907 41096975 MADE1 96 + 0 92 85774 17 0 25 30 1 0 20 chain 43520 chr8 145138636 + 41098210 41098762 MER41A 554 + 0 554 32439 313 1 2 9 1 0 80 0 1 25 0 1 123 chain 345999 chr8 145138636 + 41130765 41135708 L1PA11 4918 + 8 4578 5966 7 1 0 27 2 0 35 2 0 7 2 1 30 1 0 13 2 0 53 6 5 27 9 6 144 2 13 574 0 1 169 0 1 106 13 15 189 2 1 125 3 1 254 1 2 381 25 25 293 7 10 197 0 3 47 0 1 4 1 0 34 0 1 405 0 1 102 0 2 303 0 1 216 0 1 80 361 0 134 0 1 167 2 4 46 5 6 52 1 0 62 20 17 52 5 0 12 2 0 14 1 0 20 60 46 13 2 0 11 chain 84073 chr8 145138636 + 41212800 41213902 L1PA8 5853 + 4749 5853 20790 30 0 5 222 0 4 92 0 3 49 1 17 21 21 3 369 1 0 44 2 0 66 4 3 16 1 0 47 2 1 19 2 1 83 1 0 9 chain 523462 chr8 145138636 + 41225008 41231111 L1PA6 6164 + 0 6162 2115 236 0 2 150 10 16 113 0 2 48 1 0 523 0 3 234 0 24 162 0 2 494 0 1 5 1 0 310 1 0 705 0 1 154 5 0 4 0 1 117 0 21 458 0 1 4 1 0 766 0 3 573 0 1 1028 chain 7474 chr8 145138636 + 41405540 41405655 MER96B 391 + 36 154 76190 87 15 18 13 chain 3330 chr8 145138636 + 41418073 41418120 Kanga2_a 737 + 70 115 96766 8 2 0 37 chain 12096 chr8 145138636 + 41425166 41425313 THE1D 372 + 0 151 66674 135 0 4 12 chain 33107 chr8 145138636 + 41458157 41458581 MER41B 635 + 0 424 39428 124 0 1 62 1 0 237 chain 14823 chr8 145138636 + 41479976 41480183 LTR24C 604 + 0 209 62493 39 1 3 16 1 0 6 6 7 138 chain 207606 chr8 145138636 + 41480247 41482617 L1PA5 6144 + 3171 5512 9437 1320 0 4 163 2 0 89 31 0 765 chain 23242 chr8 145138636 + 41503886 41504133 L1HS 6032 + 5785 6032 52013 247 chain 8286 chr8 145138636 + 41553381 41553561 Charlie4a 502 + 136 321 74197 48 13 15 4 1 0 26 36 40 52 chain 29883 chr8 145138636 + 41557803 41558189 MLT2A1 477 + 0 397 42149 13 0 3 126 0 1 25 1 5 6 0 1 203 0 2 12 chain 7143 chr8 145138636 + 41574212 41574327 L1MB2 1706 + 1368 1488 77125 20 19 24 76 chain 45361 chr8 145138636 + 41631314 41632174 MER41A 554 + 0 554 31388 314 0 1 47 0 1 68 308 0 123 chain 10848 chr8 145138636 + 41633839 41633983 L1PA8 5853 + 5705 5847 68781 35 2 1 19 2 1 86 chain 8440 chr8 145138636 + 41803348 41803448 HY3 101 + 0 100 73818 100 chain 26190 chr8 145138636 + 41825650 41826013 THE1B 368 + 0 368 47442 93 0 1 75 1 0 21 3 5 4 0 1 14 0 4 12 1 0 6 0 1 5 1 0 64 7 6 56 chain 83273 chr8 145138636 + 41967769 41968675 L1PA3long 6157 + 4791 5697 20969 906 chain 53799 chr8 145138636 + 41970604 41971237 L1PA5 6144 + 5516 6144 28286 369 1 0 198 2 0 49 3 1 11 chain 4847 chr8 145138636 + 41987109 41987184 Tigger3a 397 + 139 216 86449 39 7 9 29 chain 12153 chr8 145138636 + 42192592 42192758 MER2 342 + 143 312 66564 90 0 2 60 2 3 14 chain 49497 chr8 145138636 + 42204906 42205899 MER4A 717 + 0 717 29766 121 0 1 109 7 24 92 301 0 17 0 1 69 0 1 18 6 10 126 3 12 11 9 0 73 1 3 23 1 0 6 chain 3628 chr8 145138636 + 42213272 42213328 L1MC2 1988 + 1930 1985 94199 15 5 4 36 chain 9292 chr8 145138636 + 42241548 42241706 L1MDa 1598 + 370 537 71924 34 24 34 43 1 0 56 chain 42631 chr8 145138636 + 42252811 42253340 MER4E1 777 + 68 613 32981 85 0 5 207 0 1 98 5 6 8 0 1 62 1 9 63 chain 4453 chr8 145138636 + 42261353 42261614 LTR56 451 + 20 274 88590 27 192 185 42 chain 14169 chr8 145138636 + 42262137 42262295 L1PA2 6032 + 5874 6032 63357 158 chain 43512 chr8 145138636 + 42266551 42267409 MER41A 554 + 11 553 32447 344 0 5 37 1 0 41 325 0 32 0 5 78 chain 13034 chr8 145138636 + 42314052 42314220 Tigger3a 397 + 139 307 65060 168 chain 7515 chr8 145138636 + 42364824 42364940 L1MB3 1562 + 1440 1555 76091 84 9 8 23 chain 22680 chr8 145138636 + 42527506 42527776 AluSp 311 + 11 290 52850 71 0 9 199 chain 96702 chr8 145138636 + 42575117 42576496 LTR12C 1709 + 84 1709 18692 211 1 0 69 53 62 38 4 6 249 0 118 231 4 51 78 0 1 9 24 0 8 20 13 77 1 2 146 7 108 51 9 6 5 0 2 84 chain 29010 chr8 145138636 + 42608073 42608380 AluYk11 308 + 0 307 43307 307 chain 23460 chr8 145138636 + 42643528 42643971 Tigger4 2445 + 129 576 51652 12 1 0 3 3 0 5 1 0 7 4 3 6 2 0 11 5 7 38 2 0 45 2 1 4 0 1 55 4 10 53 45 51 77 1 0 4 0 1 53 chain 11441 chr8 145138636 + 42679960 42680122 MSTA 426 + 8 194 67847 22 11 35 129 chain 321376 chr8 145138636 + 42684137 42688524 L1PA6 6164 + 2378 6160 6376 711 318 0 30 0 1 69 0 1 823 321 0 41 1 0 313 1 5 142 0 8 100 0 4 545 0 2 193 0 3 450 0 18 16 1 0 281 5 0 26 chain 105779 chr8 145138636 + 42689311 42690728 LTR12C 1709 + 0 1709 17592 277 0 4 8 10 6 43 0 43 83 12 0 4 50 0 182 0 278 184 1 0 5 3 1 106 0 4 240 1 0 112 0 33 96 chain 29313 chr8 145138636 + 42717091 42717402 AluYa5 310 + 0 310 42860 132 1 0 178 chain 103166 chr8 145138636 + 42786593 42787999 LTR12C 1709 + 0 1709 17934 256 4 5 18 13 28 17 14 15 75 6 8 42 0 2 46 1 0 138 0 278 146 0 2 32 1 0 9 3 1 106 0 4 145 0 4 86 0 3 5 4 1 89 1 0 50 16 15 83 chain 49320 chr8 145138636 + 42788136 42788894 L1PB4 2604 + 1645 2568 29826 45 1 7 29 1 0 171 0 6 20 34 51 255 13 1 20 3 1 25 15 13 23 0 154 86 1 0 16 chain 14836 chr8 145138636 + 42797083 42797421 LTR12C 1709 + 773 1033 62470 64 42 0 15 85 8 117 1 42 14 chain 3222 chr8 145138636 + 42797147 42797189 LTR12C 1709 + 996 1038 64199 42 chain 4680 chr8 145138636 + 42797204 42797265 LTR12C 1709 + 1054 1162 64199 28 1 48 32 chain 36410 chr8 145138636 + 42844188 42845011 MER41C 542 + 11 542 37134 38 0 1 65 8 6 116 318 27 50 1 2 22 6 5 199 chain 23588 chr8 145138636 + 42951659 42951954 AluSc 308 + 0 296 51451 16 1 0 245 0 2 33 chain 184940 chr8 145138636 + 43110944 43113064 L1P1 4361 + 2 2131 10339 214 1 2 731 0 4 485 0 3 589 0 1 100 chain 3956 chr8 145138636 + 43134410 43134452 MER61A 341 + 0 42 91722 42 chain 187843 chr8 145138636 + 43134667 43137949 MER61-int 3695 + 8 2615 10220 20 15 1 17 1 0 146 39 0 78 3 2 54 10 6 27 5 9 44 15 1 47 298 0 82 11 15 44 13 14 21 1 0 4 1 2 211 2 0 19 0 1 68 13 15 166 0 5 270 0 4 19 0 2 160 297 0 96 11 10 239 45 25 20 0 5 159 27 0 23 1 5 25 0 1 23 0 3 25 1 0 18 0 6 65 2 0 94 0 1 127 0 3 60 chain 6291 chr8 145138636 + 43152975 43153050 HY5 76 + 0 75 80029 75 chain 104835 chr8 145138636 + 43331218 43332584 L1PA5 6144 + 4779 6126 17709 50 31 0 260 0 1 207 0 4 232 0 3 467 0 4 119 chain 4937 chr8 145138636 + 43337902 43337963 THE1D 372 + 311 372 85972 61 chain 62786 chr8 145138636 + 43338803 43339643 L1PA8 5853 + 5010 5846 25685 72 0 2 389 0 1 4 14 15 65 9 8 42 2 0 70 2 1 9 1 0 11 1 0 45 1 0 16 2 1 85 chain 276605 chr8 145138636 + 43425514 43428764 L1PA5 6144 + 1772 5038 7534 53 0 7 128 0 1 85 4 3 45 0 3 258 0 1 21 0 4 65 2 0 1225 0 2 254 7 8 12 1 0 139 0 1 951 chain 113878 chr8 145138636 + 43432737 43434517 THE1A-int 1579 + 0 1574 16565 21 5 6 52 0 16 46 38 37 60 0 3 413 0 3 11 4 3 8 0 19 154 264 13 120 0 7 386 0 1 140 3 0 55 chain 5780 chr8 145138636 + 43435962 43436035 HUERS-P3-int 2218 + 1932 2010 82012 25 0 5 48 chain 460652 chr8 145138636 + 43480071 43485571 L1PA4 6152 + 1 5522 4110 152 39 48 279 5 6 113 0 1 471 0 1 1039 11 3 143 2 1 239 0 12 42 1 2 1197 0 1 218 3 0 214 0 1 511 0 1 601 0 5 220 chain 476347 chr8 145138636 + 43488461 43493936 L1PA3long 6157 + 604 6157 3711 164 12 136 542 2 1 1243 0 1 567 0 4 433 0 1 118 0 1 131 0 1 85 78 0 741 0 22 962 0 3 397 chain 44798 chr8 145138636 + 43625708 43626210 L1PA3long 6157 + 5655 6157 31703 502 chain 13238 chr8 145138636 + 43646804 43646961 L1PA3long 6157 + 3584 3741 64722 157 chain 52608 chr8 145138636 + 43646961 43647567 L1PA3long 6157 + 3742 4348 28700 606 chain 159580 chr8 145138636 + 43647567 43649365 L1PA3long 6157 + 4355 6157 11775 952 0 1 834 0 3 12 chain 70910 chr8 145138636 + 43725255 43726283 MER11C 1089 + 2 1059 23777 244 0 9 58 0 4 22 20 16 31 1 0 146 64 63 93 0 4 7 1 0 38 0 1 4 1 4 225 7 22 66 chain 171779 chr8 145138636 + 43867222 43869361 L1PA5 6144 + 3998 6138 11008 175 0 1 99 0 11 7 11 1 460 6 1 128 0 1 411 0 1 76 0 2 567 13 12 4 0 1 182 chain 50546 chr8 145138636 + 43892574 43893606 MER11B 1079 + 12 1063 29367 346 0 5 54 22 23 17 25 23 16 275 282 15 1 0 5 0 3 16 8 9 53 0 1 133 14 18 32 chain 64917 chr8 145138636 + 43896294 43897315 HERVK11-int 2540 + 1236 2235 25211 17 68 37 73 16 17 218 3 0 5 0 3 14 0 1 98 17 12 104 1 0 71 0 1 111 13 12 74 11 15 21 0 9 86 chain 37801 chr8 145138636 + 43912391 43912802 L1PA2 6032 + 5211 5622 36206 411 chain 104777 chr8 145138636 + 43922406 43923584 L1PA2 6032 + 4836 6014 17715 521 0 1 211 2 1 444 chain 32155 chr8 145138636 + 43928153 43928529 L1PA2 6032 + 5656 6032 40225 376 chain 206035 chr8 145138636 + 43958703 43961010 L1PA2 6032 + 3698 6032 9504 1855 0 26 132 2 3 318 chain 208166 chr8 145138636 + 45965931 45968237 L1PA2 6032 + 3698 6030 9415 1855 0 26 451 chain 70856 chr8 145138636 + 46019599 46020470 MER11D 897 + 0 897 23792 593 1 24 62 0 1 102 5 7 108 chain 29536 chr8 145138636 + 46123852 46124337 LTR61 567 + 66 515 42567 49 0 1 75 2 0 22 0 6 10 13 7 32 9 0 72 22 27 47 32 0 57 0 1 43 chain 38748 chr8 145138636 + 46278043 46278550 MER9a3 513 + 0 513 35531 12 1 4 4 1 0 91 0 1 146 1 0 46 0 1 129 0 1 19 1 3 56 chain 366162 chr8 145138636 + 46279898 46284549 HERVK9-int 4720 + 57 4717 5722 66 2 1 8 1 0 26 23 23 121 1 2 286 0 1 179 0 1 80 0 11 127 0 1 123 3 0 1368 3 4 222 12 0 595 2 0 5 0 2 324 2 0 5 1 3 287 7 9 190 0 3 62 0 3 369 0 1 136 1 0 8 0 2 6 chain 96818 chr8 145138636 + 46311184 46312292 L1PA3long 6157 + 5049 6157 18674 850 1 0 6 0 1 251 chain 113803 chr8 145138636 + 46331562 46333092 LTR12C 1709 + 11 1708 16578 245 39 40 42 0 43 112 4 5 4 1 0 197 0 159 254 1 0 5 3 1 90 51 20 313 1 0 78 7 6 83 chain 17470 chr8 145138636 + 46562044 46562347 THE1B 368 + 0 306 59271 90 8 5 12 5 7 55 1 0 4 19 23 4 1 0 10 0 4 16 1 0 12 2 1 63 chain 67719 chr8 145138636 + 46571776 46572685 LTR12C 1709 + 432 1709 24516 32 4 6 17 1 0 161 0 278 149 0 2 35 1 0 4 4 2 96 21 14 136 6 0 75 0 101 87 3 5 77 chain 83540 chr8 145138636 + 46586633 46587856 HERVK11-int 2540 + 1056 2230 20907 10 2 0 64 1 0 43 8 7 8 3 0 17 18 8 13 1 0 27 14 3 34 21 1 419 25 20 49 0 1 4 1 0 51 1 0 127 0 1 31 0 1 23 13 15 6 3 0 67 1 6 118 chain 17581 chr8 145138636 + 46588840 46590041 MER11A 1151 + 0 1151 59143 37 22 121 41 1 0 33 822 673 31 8 9 46 28 29 32 6 7 26 7 6 21 1 0 39 chain 70912 chr8 145138636 + 46603858 46604644 L1PA2 6032 + 5235 6021 23774 786 chain 300989 chr8 145138636 + 46610249 46614040 L1PA7 6471 + 2697 6470 6801 7 0 1 111 2 1 357 0 1 58 9 10 248 2 1 7 1 0 174 7 0 9 5 9 5 0 2 51 2 0 256 7 5 247 0 1 134 10 26 17 28 0 514 1 0 672 1 0 849 chain 36399 chr8 145138636 + 46628063 46629066 L1PA15 4387 + 3630 4331 37142 167 75 102 33 1 0 19 0 1 45 354 37 70 1 0 26 1 0 55 1 0 12 14 10 10 1 0 50 12 9 38 3 1 11 0 1 4 chain 154097 chr8 145138636 + 46632288 46633995 L1PA3long 6157 + 4450 6157 12105 1707 chain 65620 chr8 145138636 + 46647640 46648410 L1PA5 6144 + 5351 6124 25050 36 1 4 733 chain 226977 chr8 145138636 + 46652838 46656226 HERVK22-int 3844 + 18 3844 8841 731 0 5 409 0 13 183 316 18 126 2 1 57 0 4 67 0 1 13 1 0 16 21 1 323 2 1 4 0 1 39 11 10 240 1 0 5 0 1 58 1 0 56 0 1 68 0 11 155 24 33 12 14 20 47 1 48 201 0 665 88 18 17 70 1 0 7 chain 18343 chr8 145138636 + 46656707 46656956 L1PA7 6471 + 6212 6461 58310 93 13 13 143 chain 209241 chr8 145138636 + 46691805 46694217 L1P1 4361 + 3 2416 9375 1227 0 2 478 1 0 706 chain 337912 chr8 145138636 + 46726981 46730918 L1PA4 6152 + 10 5520 6109 412 0 1550 165 0 4 244 0 2 39 0 1 738 0 1 31 4 6 1092 4 12 44 0 4 279 0 1 885 chain 161342 chr8 145138636 + 46732867 46750165 L1PA3long 6157 + 3867 6153 11660 1503 15182 169 476 0 1 137 chain 14644 chr8 145138636 + 46763476 46763797 L1PB1 5432 + 5131 5422 62739 4 1 0 11 1 0 12 5 1 9 2 0 52 2 1 10 12 11 39 1 0 15 1 0 4 1 0 11 9 0 10 8 6 4 1 0 15 2 0 24 1 0 21 1 0 8 6 5 18 chain 542578 chr8 145138636 + 46797331 46803468 L1PA3long 6157 + 4 6157 1170 766 2 11 673 0 1 2004 0 2 227 5 1 257 0 1 202 0 1 203 0 4 1650 1 3 147 chain 75413 chr8 145138636 + 46812960 46813808 L1P1 4361 + 1836 2685 22742 844 0 1 4 chain 8706 chr8 145138636 + 46831050 46831155 U6 107 + 1 106 73197 105 chain 421173 chr8 145138636 + 46831156 46836001 L1PA4 6152 + 1298 6151 4864 79 0 1 1053 0 4 1145 6 7 699 0 2 1101 0 1 218 1 0 543 chain 39685 chr8 145138636 + 46876535 46877049 MER9a3 513 + 0 513 34898 182 6 5 69 21 4 14 0 18 73 1 0 148 chain 245702 chr8 145138636 + 46877645 46880765 HERVK9-int 4720 + 6 4720 8337 14 1 0 6 22 10 13 8 5 4 1 0 66 1 0 9 1 0 25 17 16 921 0 1 254 1 6 140 4 928 350 13 692 284 1 0 691 2 1 6 0 1 187 22 28 56 chain 40823 chr8 145138636 + 46880765 46881273 MER9a3 513 + 0 508 34080 193 10 8 253 0 2 52 chain 505738 chr8 145138636 + 46893992 46900101 L1PA6 6164 + 14 6152 2940 321 7 11 25 25 32 97 11 10 277 0 17 943 0 2 584 0 1 249 0 1 139 0 1 459 1 2 4 0 1 80 0 3 126 1 0 124 3 0 456 11 0 391 0 4 941 1 0 311 0 1 204 0 1 158 12 13 12 1 2 135 chain 117823 chr8 145138636 + 46940723 46942161 L1P1 4361 + 4 1444 15914 201 0 1 24 0 1 6 1 0 458 1 2 747 chain 519844 chr8 145138636 + 46942165 46948600 L1PA3long 6157 + 5 6157 2283 573 0 1 124 1 8 335 1 0 184 32 33 927 1 0 765 0 2 248 288 0 522 36 36 276 7 6 272 1 0 324 2 0 1516 chain 9655 chr8 145138636 + 46983683 46983808 HSMAR2 1300 + 1126 1255 71151 103 0 4 22 chain 39968 chr8 145138636 + 46986913 46987352 LTR7Y 441 + 0 439 34682 439 chain 532720 chr8 145138636 + 47018714 47024744 L1PA3long 6157 + 4 6149 1722 149 1 2 147 28 4 470 0 128 70 0 1 179 8 11 84 1 0 604 0 5 1141 1 0 2342 0 1 47 0 1 598 0 1 160 chain 55573 chr8 145138636 + 47060628 47061372 MER4E1 777 + 0 770 27695 16 5 1 307 1 0 7 1 20 66 0 1 4 1 0 10 0 1 84 0 1 26 1 7 57 0 4 158 chain 92275 chr8 145138636 + 47066340 47068096 MER57-int 2662 + 40 1507 19303 30 59 46 58 12 18 43 0 4 17 1 0 61 2 0 25 0 3 79 0 1 17 321 0 18 28 29 89 1 2 132 0 1 29 16 12 65 2 0 45 0 1 202 4 3 26 8 4 5 2 0 84 4 33 5 0 3 78 0 4 57 0 3 15 0 7 10 2 0 41 1 0 62 chain 223714 chr8 145138636 + 47071414 47074129 L1PA7 6471 + 3728 6469 8938 81 0 4 197 0 2 511 0 4 429 0 1 209 2 1 163 0 3 132 0 6 36 0 3 114 1 5 840 chain 486335 chr8 145138636 + 47075514 47081160 L1PA4 6152 + 1 6151 3505 295 1 2 432 0 1 501 5 4 70 0 1 8 1 0 868 1 0 136 0 1 921 0 1 698 0 1 243 0 1 159 0 4 290 0 5 341 1 493 421 1 0 253 chain 80012 chr8 145138636 + 47087658 47088551 L1PA3long 6157 + 5263 6157 21624 560 0 1 333 chain 7638 chr8 145138636 + 47105396 47105531 L1MC1 2226 + 1915 2047 75776 51 29 26 55 chain 102297 chr8 145138636 + 47137519 47138690 SVA_A 1864 + 18 1864 18035 320 0 5 302 0 666 93 1 0 9 0 1 10 0 4 436 chain 399779 chr8 145138636 + 47152774 47158290 L1PA6 6164 + 0 5843 5154 344 22 10 155 2 1 193 0 24 201 0 4 491 9 13 33 1 1043 417 0 1 35 0 2 293 14 4 437 0 2 310 0 6 631 0 5 455 2 0 76 0 2 188 740 0 467 chain 534278 chr8 145138636 + 47158290 47164269 L1PA3long 6157 + 49 6156 1649 102 15 16 95 0 1 137 0 2 374 0 128 1080 1 0 1015 1 0 1671 1 2 519 3 0 103 0 1 716 2 1 144 chain 15207 chr8 145138636 + 47209666 47210321 MER4D 903 + 236 878 62031 83 6 8 22 0 1 4 6 9 13 6 7 8 17 0 10 36 47 56 1 0 32 312 300 12 0 1 24 2 0 5 chain 73092 chr8 145138636 + 47234672 47235460 L1PA2 6032 + 5243 6031 23300 788 chain 3381 chr8 145138636 + 47290264 47290302 L1MD2 1676 + 1462 1500 96281 38 chain 72661 chr8 145138636 + 47312988 47313793 L1PA4 6152 + 4066 4870 23385 358 1 0 446 chain 469934 chr8 145138636 + 47316969 47322466 L1PA4 6152 + 3 5519 3862 604 0 6 6 0 1 89 2 0 241 0 4 52 1 0 226 1 0 11 2 3 1008 1 0 24 0 1 480 1 0 199 1 0 274 19 18 4 0 1 237 0 1 541 0 4 1161 0 1 102 1 8 209 chain 14942 chr8 145138636 + 47359113 47359268 AluYb8 318 + 149 304 62330 155 chain 375712 chr8 145138636 + 47400835 47405291 L1PA5 6144 + 1478 6071 5558 333 1 0 101 4 9 392 2 1 489 21 151 203 0 2 766 1 0 421 0 3 308 3 5 355 3 4 487 2 0 324 1 0 239 chain 54269 chr8 145138636 + 47452339 47452944 L1PA5 6144 + 3608 4214 28128 322 1 2 282 chain 23148 chr8 145138636 + 47452971 47453233 L1PA5 6144 + 4241 4503 52145 262 chain 61765 chr8 145138636 + 47453237 47453991 L1PA5 6144 + 4503 5496 25923 355 0 9 179 8 238 212 chain 32922 chr8 145138636 + 47453991 47454372 L1PA5 6144 + 5498 5879 39571 381 chain 526576 chr8 145138636 + 47484882 47491005 L1PA5 6144 + 14 6144 1972 370 12 6 231 0 1 133 10 8 155 0 4 210 3 0 424 0 1 64 0 2 687 10 6 898 0 1 24 1 0 4 0 4 426 0 1 989 1 2 625 0 5 245 0 2 498 0 1 103 chain 12673 chr8 145138636 + 47533259 47533470 L1PA14 3548 + 3245 3443 65672 7 3 0 79 1 0 12 5 1 35 4 2 12 1 0 5 1 0 17 1 0 28 chain 320034 chr8 145138636 + 47623169 47626740 L1PA4 6152 + 1919 5493 6408 308 6 5 273 0 2 1433 0 1 1405 0 1 146 chain 2756 chr8 145138636 + 47687000 47687044 MADE1 96 + 2 62 101924 29 1 17 14 chain 20826 chr8 145138636 + 47701158 47701435 AluSp 311 + 7 290 55331 32 0 1 215 11 16 19 chain 3389 chr8 145138636 + 47715510 47715590 MADE1 96 + 0 96 96188 21 11 27 48 chain 182687 chr8 145138636 + 47751995 47754371 L1P2 5180 + 4 3424 10457 141 6 5 43 2 1 41 0 2 10 6 5 4 1 0 127 0 11 63 0 11 46 0 1 48 1 0 18 1 2 29 0 1 6 21 23 145 1 0 6 2 1 1412 6 1028 71 1 0 4 0 1 114 chain 8769 chr8 145138636 + 47792572 47792754 L1MA3 4352 + 4176 4322 73057 59 4 0 24 2 0 19 12 10 23 28 0 11 chain 48629 chr8 145138636 + 47800091 47800614 L1PA3long 6157 + 5630 6153 30076 523 chain 7257 chr8 145138636 + 47822967 47823078 MSTB 430 + 32 142 76795 61 3 1 22 6 7 19 chain 4411 chr8 145138636 + 47909232 47909287 MER11A 1151 + 154 207 88838 45 2 0 8 chain 6851 chr8 145138636 + 47912961 47913051 Tigger1 2417 + 50 139 78142 10 1 0 79 chain 34002 chr8 145138636 + 47919830 47920298 MER9a3 513 + 7 512 38705 11 4 29 60 7 8 56 6 7 78 1 0 40 0 10 127 0 1 78 chain 7816 chr8 145138636 + 47999269 47999361 MER84 505 + 0 92 75322 92 chain 7599 chr8 145138636 + 48001677 48002726 L1MA8 2339 + 1363 2149 75872 90 929 666 30 chain 3250 chr8 145138636 + 48110017 48110108 MLT2B4 540 + 469 540 97482 21 44 24 26 chain 4406 chr8 145138636 + 48148684 48148740 SVA_F 1814 + 607 660 88868 12 3 0 41 chain 7315 chr8 145138636 + 48152054 48152193 MER44D 709 + 565 709 76621 43 27 29 48 1 2 14 0 2 6 chain 160581 chr8 145138636 + 48183213 48185048 L1PA5 6144 + 4287 6132 11713 57 0 4 44 0 10 651 4 0 180 0 1 337 1 0 561 chain 31491 chr8 145138636 + 48196129 48196586 MER4A1 472 + 0 472 40741 15 0 2 4 0 1 8 1 0 70 9 11 119 41 52 190 chain 269563 chr8 145138636 + 48208076 48211385 L1PA5 6144 + 2422 5508 7719 737 7 0 5 2 0 316 1 0 1178 225 6 627 5 11 206 chain 19660 chr8 145138636 + 48210322 48210547 L1PA5 6144 + 2908 3133 56260 225 chain 48055 chr8 145138636 + 48232063 48232825 HUERS-P3b-int 2065 + 1267 1994 30274 32 1 0 4 0 1 167 1 0 44 27 4 82 2 0 13 1 0 25 1 0 89 3 1 72 1 3 16 4 1 38 3 4 17 24 20 41 1 0 53 chain 8663 chr8 145138636 + 48233177 48233357 LTR12B 2670 + 1616 1963 73313 29 3 0 5 7 184 30 7 6 33 1 0 11 6 4 21 3 0 24 chain 10461 chr8 145138636 + 48242531 48242706 LTR12B 2670 + 1918 2170 69495 22 3 0 23 21 101 106 chain 45136 chr8 145138636 + 48256037 48256549 MER9a1 513 + 0 513 31502 283 0 1 229 chain 57138 chr8 145138636 + 48327208 48328095 L1PA15 4387 + 3491 4356 27215 322 14 12 66 6 0 19 1 2 20 1 0 79 5 0 93 1 0 26 1 0 49 23 28 10 1 0 46 10 7 41 6 4 12 7 1 28 chain 38978 chr8 145138636 + 48346407 48346909 THE1B-int 1605 + 1105 1605 35369 68 1 2 124 3 0 306 chain 16526 chr8 145138636 + 48347276 48347486 L1PREC2 3366 + 2039 2249 60336 210 chain 229751 chr8 145138636 + 48348790 48352229 L1PA13 3608 + 90 3396 8754 19 6 4 23 7 4 12 12 11 14 3 0 24 38 27 63 2 0 125 1 0 10 0 2 17 2 0 15 8 3 18 1 0 17 8 6 11 2 0 19 20 19 77 2 0 312 0 7 149 0 1 98 3 4 115 0 1 4 1 0 51 1 2 493 6 7 56 3 4 14 1 0 12 1 20 155 7 5 6 0 2 272 1 2 202 4 5 174 14 14 11 93 1 11 14 0 205 0 1 112 4 3 113 22 0 61 1 0 12 0 1 38 1 0 10 chain 439762 chr8 145138636 + 48352659 48357887 L1PA6 6164 + 0 6162 4580 106 0 956 703 2 1 67 1 0 389 0 1 102 21 0 864 1 2 37 1 0 1651 0 1 452 3 4 68 1 0 427 0 1 123 7 7 42 6 0 6 7 13 131 2 0 8 chain 14515 chr8 145138636 + 48435269 48435420 AluYb8 318 + 156 307 62884 151 chain 57153 chr8 145138636 + 48455395 48456099 L1PA8 5853 + 5158 5853 27210 406 1 0 44 2 0 70 16 12 54 1 0 16 1 0 93 chain 500187 chr8 145138636 + 48485587 48491654 L1PA6 6164 + 0 6137 3123 15 0 1 196 0 10 61 8 17 487 0 17 232 0 1 205 6 7 75 0 1 58 0 4 73 0 1 267 3 2 227 0 1 376 19 7 130 4 0 493 0 1 75 5 0 12 1 0 60 0 1 72 6 0 38 9 2 39 0 12 329 0 31 117 0 3 438 0 1 895 0 6 219 0 3 498 0 1 9 1 0 21 0 1 263 0 1 25 chain 4798 chr8 145138636 + 48495711 48495767 MER20 218 + 95 151 86710 56 chain 63343 chr8 145138636 + 48507050 48507868 LTR12 884 + 0 869 25554 204 0 25 18 0 25 67 6 8 34 2 0 82 6 8 4 1 0 394 chain 135856 chr8 145138636 + 48567115 48568774 L1PA8 5853 + 4200 5853 13448 172 1 5 129 0 1 105 1 0 126 0 1 264 1 0 6 2 0 78 1 0 477 2 1 43 4 2 69 1 0 12 1 0 44 10 9 18 1 0 91 chain 6891 chr8 145138636 + 48615674 48615760 L1PB2 3958 + 3753 3838 77988 22 1 0 63 chain 76836 chr8 145138636 + 48719938 48720969 MER11A 1151 + 0 1151 22365 55 0 99 76 1 0 64 4 0 146 0 1 97 1 8 111 1 0 27 5 6 131 8 41 22 18 0 30 0 1 5 0 1 60 6 7 163 chain 44448 chr8 145138636 + 48962288 48962800 MER9a1 513 + 0 513 31857 26 0 1 486 chain 277675 chr8 145138636 + 48964114 48967488 HERVK9-int 4720 + 36 4716 7499 13 8 5 4 1 0 66 1 0 7 15 14 17 1 0 1054 0 1 279 0 924 822 0 249 105 0 14 732 0 96 80 0 28 9 0 1 160 chain 44302 chr8 145138636 + 48967491 48968004 MER9a1 513 + 0 513 31946 513 chain 201824 chr8 145138636 + 48997622 49000000 L1PA4 6152 + 12 2401 9647 91 0 1 1102 2 1 4 0 1 204 0 5 28 0 3 363 0 2 584 chain 114195 chr8 145138636 + 49001893 49003174 L1PA2 6032 + 3603 4874 16522 215 0 1 5 17 5 97 0 1 947 chain 24548 chr8 145138636 + 49018999 49019356 Ricksha_0 1343 + 963 1308 49951 124 5 6 192 12 0 10 1 0 13 chain 8717 chr8 145138636 + 49025057 49025163 LTR12_ 688 + 365 471 73174 106 chain 12029 chr8 145138636 + 49105983 49106195 MER30 238 + 0 238 66799 18 24 28 13 0 2 37 2 22 32 0 6 8 6 0 72 chain 20946 chr8 145138636 + 49179431 49179838 L1MA2 4263 + 3717 4111 55200 78 14 11 113 67 66 46 0 3 6 29 18 46 1 0 7 chain 179481 chr8 145138636 + 49200004 49202071 L1PA5 6144 + 4078 6144 10609 113 0 1 436 1 0 666 1 0 850 chain 8434 chr8 145138636 + 49204307 49204415 MSTA 426 + 318 426 73834 108 chain 90957 chr8 145138636 + 49253984 49255053 MER11C 1089 + 0 1073 19511 220 0 5 288 0 1 53 2 1 177 1 0 328 chain 7965 chr8 145138636 + 49306647 49306752 LTR12D 1347 + 587 693 74959 44 1 2 60 chain 13064 chr8 145138636 + 49306797 49307568 LTR12D 1347 + 468 1049 64997 68 0 31 19 9 8 17 41 41 27 31 27 45 301 222 34 157 20 22 chain 2862 chr8 145138636 + 49307206 49307241 LTR12D 1347 + 1129 1164 101146 35 chain 15244 chr8 145138636 + 49330209 49330390 7SK 245 + 0 181 61988 181 chain 33525 chr8 145138636 + 49333380 49333742 L1PA2 6032 + 5667 6029 39064 362 chain 113128 chr8 145138636 + 49387135 49388721 THE1C-int 1605 + 15 1605 16659 426 4 11 171 1 0 48 1 0 5 1 2 74 6 0 61 1 0 4 0 1 177 32 23 149 7 8 65 29 30 55 0 1 8 0 4 204 9 15 48 chain 44503 chr8 145138636 + 49390859 49391370 MER9a1 513 + 0 513 31824 13 0 1 120 0 1 378 chain 28379 chr8 145138636 + 49391758 49392064 AluYb8 318 + 0 305 44303 132 1 0 173 chain 4642 chr8 145138636 + 49406089 49406147 Ricksha_c 1012 + 95 152 87583 52 1 0 5 chain 264028 chr8 145138636 + 49420159 49423777 HERVH-int 3825 + 0 3825 7854 333 1 0 6 1 5 63 64 181 16 1 152 22 1 0 425 1 2 29 43 13 71 1 0 112 9 0 40 0 1 376 0 1 178 1 2 21 48 53 219 28 17 70 0 1 5 5 4 209 2 1 30 17 1 142 4 1 214 6 5 44 3 4 260 2 1 495 chain 59520 chr8 145138636 + 49426640 49427551 LTR12D 1347 + 404 1347 26501 132 0 31 55 0 1 70 114 13 212 28 32 35 0 97 265 chain 5056 chr8 145138636 + 49426910 49426967 LTR12D 1347 + 437 494 85382 57 chain 3471 chr8 145138636 + 49426967 49427005 LTR12D 1347 + 644 682 95450 38 chain 390151 chr8 145138636 + 49427605 49432382 HERV9-int 5642 + 0 5642 5318 630 0 3 7 1 0 155 4 3 303 12 705 1104 1 2 355 0 1 379 8 179 1402 0 33 196 6 4 35 4 2 27 1 0 60 1 0 13 28 5 19 4 0 3 2 0 17 chain 56160 chr8 145138636 + 49435007 49435851 LTR12D 1347 + 405 1347 27519 68 78 0 62 2 33 65 13 15 22 0 42 208 23 27 63 0 97 240 chain 20567 chr8 145138636 + 49445475 49445850 THE1C 375 + 0 375 55686 80 5 6 18 39 40 36 0 3 17 20 15 22 11 12 100 1 0 26 chain 460665 chr8 145138636 + 49447912 49453113 L1PA3long 6157 + 5 6149 4109 547 0 1 240 0 1 255 0 2 260 0 7 1355 0 930 2532 0 2 12 chain 134614 chr8 145138636 + 49504846 49506385 L1PA5 6144 + 4557 6127 13583 584 0 28 124 0 1 487 0 1 133 8 9 203 chain 15168 chr8 145138636 + 49525934 49526125 L1PA7 6471 + 6279 6467 62079 182 3 0 6 chain 8137 chr8 145138636 + 49555223 49555343 MER85 139 + 8 139 74546 84 8 19 28 chain 3001 chr8 145138636 + 49601966 49602015 L1MA8 2339 + 2210 2257 99827 24 3 1 22 chain 59310 chr8 145138636 + 49617824 49618571 MER4E 760 + 0 753 26564 23 6 7 110 7 5 218 1 3 80 4 8 31 0 1 267 chain 36159 chr8 145138636 + 49621393 49621869 LTR10F 562 + 0 562 37305 122 1 29 23 0 80 12 21 0 7 2 0 276 0 1 12 chain 9888 chr8 145138636 + 49621991 49622109 MER50 708 + 566 684 70645 118 chain 48672 chr8 145138636 + 49672016 49672684 L1PA10 4194 + 3480 4150 30063 55 0 4 326 0 1 41 0 1 22 10 14 7 4 0 131 8 7 27 3 0 34 chain 242316 chr8 145138636 + 49677369 49680049 L1PA3long 6157 + 3476 6157 8417 1428 0 1 1252 chain 22759 chr8 145138636 + 49710550 49710999 L1PA13 3608 + 3130 3548 52741 31 1 0 80 1 0 32 2 0 63 1 0 19 2 0 5 0 2 5 9 10 14 1 0 5 11 9 38 3 0 5 2 0 18 1 0 20 8 5 13 5 0 14 1 0 4 23 14 12 chain 5674 chr8 145138636 + 49757050 49757142 MER31B 477 + 257 353 82452 14 9 11 30 1 3 38 chain 14175 chr8 145138636 + 49766593 49766783 MSTA-int 1630 + 1428 1624 63353 88 1 7 58 1 0 4 0 1 38 chain 123550 chr8 145138636 + 49773575 49775104 L1PA7 6471 + 4827 6367 14923 128 12 7 658 9 8 209 8 7 440 9 27 56 chain 20714 chr8 145138636 + 49783390 49783672 L1PA8 5853 + 5577 5853 55478 31 2 0 70 2 1 9 1 0 51 3 2 17 4 3 92 chain 61714 chr8 145138636 + 49790581 49791251 L1PA2 6032 + 5359 6029 25941 670 chain 11201 chr8 145138636 + 49794216 49794546 MLT2B4 540 + 0 433 68245 94 31 35 45 136 235 24 chain 29745 chr8 145138636 + 49806184 49806732 L1PB1 5432 + 4903 5430 42312 200 0 7 25 1 0 11 1 0 10 19 13 44 9 8 11 1 4 45 1 0 12 7 4 14 9 0 15 3 1 5 1 0 14 2 0 24 23 22 12 1 0 10 1 0 12 1 0 4 chain 26088 chr8 145138636 + 49944442 49944736 L1PA3long 6157 + 5862 6157 47595 36 1 0 237 0 2 20 chain 25065 chr8 145138636 + 49951497 49951770 L1PA2 6032 + 5758 6031 49174 273 chain 190879 chr8 145138636 + 49970923 49973114 L1PA4 6152 + 3542 5741 10072 308 1 3 24 0 1 47 0 1 4 1 0 155 0 2 1213 0 2 74 5 6 359 chain 13354 chr8 145138636 + 50028598 50028746 L1PA2 6032 + 5877 6025 64535 148 chain 163910 chr8 145138636 + 50088216 50089986 L1PA2 6032 + 3828 5598 11488 1770 chain 15012 chr8 145138636 + 50097505 50097669 AluYd8 298 + 123 287 62255 164 chain 132803 chr8 145138636 + 50165837 50167274 L1PA2 6032 + 4584 6021 13753 1437 chain 31128 chr8 145138636 + 50187087 50187480 L1PA8 5853 + 4266 4658 41035 74 1 0 318 chain 151462 chr8 145138636 + 50208779 50210669 L1PA5 6144 + 1 1920 12256 130 1 15 13 7 19 101 1 11 304 10 11 444 0 1 107 22 13 750 chain 32327 chr8 145138636 + 50214070 50214418 L1PA3long 6157 + 5809 6157 40092 348 chain 54835 chr8 145138636 + 50226157 50226893 MER4E1 777 + 0 770 27935 24 0 1 158 19 49 312 5 7 12 1 3 105 5 4 95 chain 9240 chr8 145138636 + 50238027 50238156 L1PREC2 3366 + 2604 2736 72035 112 4 7 13 chain 42870 chr8 145138636 + 50296188 50296777 L1PA8 5853 + 5269 5853 32853 294 1 0 45 2 0 29 0 1 27 0 1 12 2 1 9 11 9 43 2 1 19 3 2 84 0 1 6 chain 6681 chr8 145138636 + 50312933 50313023 L1M3 994 + 278 367 78700 17 2 1 71 chain 103971 chr8 145138636 + 50349736 50351102 LTR12C 1709 + 0 1709 17823 262 0 1 34 0 2 115 9 10 40 10 7 55 1 0 124 0 119 68 1 0 275 2 1 5 2 0 97 20 13 74 2 4 86 0 233 84 chain 51372 chr8 145138636 + 50352820 50353415 L1PA5 6144 + 5549 6144 29089 595 chain 68338 chr8 145138636 + 50487053 50487835 L1PA3long 6157 + 5362 6146 24374 477 0 1 162 6 7 137 chain 472104 chr8 145138636 + 50515421 50521418 L1PA7 6471 + 418 6460 3808 493 2 10 231 0 1 131 1 2 12 6 7 80 20 20 149 2 1 33 0 3 781 28 30 19 0 3 168 0 1 47 15 0 885 1 0 24 17 21 79 4 3 183 0 1 432 0 1 208 2 1 8 1 2 231 0 1 181 0 15 33 2 0 594 4 22 4 0 1 566 0 3 87 0 2 30 2 1 201 chain 40682 chr8 145138636 + 50559623 50560301 L1PA11 4918 + 3917 4578 34158 50 6 7 81 3 5 267 1 0 4 5 8 54 2 1 13 2 0 7 2 1 59 2 0 13 2 1 16 48 35 6 0 1 8 1 0 13 2 0 11 chain 286745 chr8 145138636 + 50669011 50672204 L1PA3long 6157 + 2967 6157 7237 201 7 3 91 0 1 2894 chain 14901 chr8 145138636 + 50714345 50714536 L1PA8 5853 + 4147 4335 62386 68 4 1 119 chain 3320 chr8 145138636 + 50734261 50734296 U2 167 + 0 35 96842 35 chain 285524 chr8 145138636 + 50735327 50739093 L1P2 5180 + 1196 5174 7270 38 1 0 4 0 1 75 1 0 4 0 1 241 0 1 109 0 1 510 0 193 83 0 2 149 12 13 122 6 5 38 0 4 115 28 39 288 13 17 694 0 1 574 0 1 363 5 1 80 8 8 116 1 0 49 1 0 38 chain 53217 chr8 145138636 + 50760601 50761261 L1PA7 6471 + 3535 4197 28496 76 0 1 390 0 1 134 0 1 35 7 6 18 chain 33199 chr8 145138636 + 50823729 50824126 L1PA7 6471 + 6063 6459 39354 389 1 0 7 chain 30917 chr8 145138636 + 50876116 50876576 L1PA10 4194 + 3677 4150 41204 24 1 0 4 2 3 249 4 3 57 1 17 67 27 25 24 chain 12991 chr8 145138636 + 50878901 50879053 THE1B-int 1605 + 1443 1599 65128 67 0 4 85 chain 21594 chr8 145138636 + 50879058 50879402 THE1B 368 + 0 368 54368 44 6 21 107 2 1 25 35 45 125 chain 260813 chr8 145138636 + 50918032 50921054 L1PA4 6152 + 1045 4071 7948 1151 2 3 120 0 1 613 0 1 231 1 0 440 2 1 68 0 2 372 0 1 22 chain 3345 chr8 145138636 + 50928622 50928661 MLT1A 405 + 73 112 96645 39 chain 21818 chr8 145138636 + 50938474 50938829 THE1B 368 + 0 368 54079 15 2 0 25 4 9 119 1 0 30 14 16 18 3 11 32 0 2 6 13 12 73 chain 138409 chr8 145138636 + 50954647 50956431 L1PA8 5853 + 592 2383 13226 24 41 45 37 0 1 201 0 1 42 0 1 260 4 5 318 0 1 166 1 0 211 0 4 109 4 0 19 11 10 336 chain 82319 chr8 145138636 + 50977095 50978045 L1PA4 6152 + 5194 6143 21172 801 1 0 148 chain 53763 chr8 145138636 + 51002037 51002622 L1PA2 6032 + 5446 6032 28298 455 0 1 130 chain 13227 chr8 145138636 + 51065380 51065627 L1MB7 1623 + 886 1133 64734 104 27 24 14 31 34 71 chain 23361 chr8 145138636 + 51076153 51076415 L1PA2 6032 + 5763 6032 51836 110 0 7 152 chain 160129 chr8 145138636 + 51097114 51099080 L1PA7 6471 + 4512 6467 11746 204 1 0 4 0 1 223 0 1 676 0 3 81 1 0 166 0 1 101 0 1 36 14 0 211 0 1 75 28 27 134 2 0 9 chain 150215 chr8 145138636 + 51144885 51146698 L1PA7 6471 + 4641 6464 12333 345 0 9 245 0 1 38 1 0 340 1 2 843 chain 154821 chr8 145138636 + 51158406 51160193 SVA_D 2077 + 0 2070 12066 13 5 0 12 5 0 526 0 40 97 0 40 175 0 85 31 0 51 34 0 78 400 0 1 347 6 0 44 0 4 92 chain 14374 chr8 145138636 + 51216620 51216867 Tigger3 1187 + 687 1037 63078 12 0 99 46 4 8 52 29 30 44 1 0 59 chain 24330 chr8 145138636 + 51219841 51220121 L1PA5 6144 + 5852 6132 50286 280 chain 96095 chr8 145138636 + 51230761 51232099 LTR12C 1709 + 296 1709 18764 42 0 43 83 10 13 62 9 8 62 0 1 96 41 0 112 9 49 91 0 41 113 1 0 102 21 14 54 6 5 271 1 0 60 8 7 84 chain 2093 chr8 145138636 + 51231138 51231166 LTR12C 1709 + 837 865 55388 28 chain 63975 chr8 145138636 + 51249369 51250209 L1PA8 5853 + 5030 5853 25417 80 0 1 205 15 0 14 0 1 235 1 0 42 2 0 66 6 5 8 0 6 7 5 0 40 2 1 112 chain 25077 chr8 145138636 + 51254535 51254919 MSTA 426 + 0 414 49156 63 8 10 121 4 17 16 29 30 69 0 14 74 chain 5531 chr8 145138636 + 51271751 51271819 LTR12C 1709 + 1018 1086 83109 68 chain 3085 chr8 145138636 + 51271895 51271930 LTR12C 1709 + 683 718 98914 35 chain 278640 chr8 145138636 + 51330975 51334741 L1PBa1 4058 + 11 3786 7464 26 16 12 6 1 0 252 5 0 126 15 12 121 1 0 25 19 11 18 7 11 156 7 0 50 1 2 127 4 15 178 54 55 230 12 13 132 14 7 56 1 0 10 1 0 644 0 4 128 0 1 13 6 0 7 1 8 216 15 46 706 1 0 101 15 13 116 1 0 7 1 0 29 7 6 41 2 0 38 chain 10623 chr8 145138636 + 51352174 51352387 L1PB4 2604 + 2171 2391 69181 126 61 70 19 2 0 5 chain 6340 chr8 145138636 + 51377991 51378106 LTR12C 1709 + 773 928 58290 64 1 0 20 0 41 30 chain 28928 chr8 145138636 + 51378106 51378818 LTR12C 1709 + 650 1451 43437 187 1 0 80 0 2 57 0 41 20 329 376 38 chain 33713 chr8 145138636 + 51421917 51422383 MER1A 529 + 0 529 38910 18 13 26 12 0 8 12 19 59 328 0 2 64 chain 225351 chr8 145138636 + 51436514 51440420 L1PB1 5432 + 2118 5423 8877 129 29 34 237 0 1 68 5 10 83 12 10 5 0 2 121 0 1 9 3 2 10 7 17 77 3 4 48 1 0 392 20 49 95 0 2 128 26 27 53 1 0 6 13 8 164 0 1 81 0 1 122 260 0 262 2 1 67 6 6 118 5 6 53 3 0 5 0 1 170 1 0 117 316 1 181 13 2 11 29 0 22 1 0 6 1 0 12 2 0 3 2 0 9 2 0 49 9 8 11 1 0 44 1 0 14 2 0 11 2 1 5 9 0 15 29 24 20 1 0 22 1 0 12 1 0 14 1 0 5 chain 17243 chr8 145138636 + 51454954 51455133 AluYb8 318 + 127 306 59535 179 chain 537876 chr8 145138636 + 51492297 51498433 L1PA4 6152 + 1 6143 1458 1039 1 0 105 1 0 16 3 6 421 0 1 496 0 1 1122 0 1 731 0 1 353 7 0 154 0 2 107 0 1 467 0 1 252 0 4 861 chain 162370 chr8 145138636 + 51533521 51535612 SVA_E 1901 + 0 1780 11587 108 2 12 33 2 0 173 3 0 261 0 1 229 129 0 41 139 0 68 52 0 155 0 3 696 chain 7936 chr8 145138636 + 51534333 51534461 SVA_E 1901 + 817 940 36192 19 2 0 16 0 1 74 4 0 13 chain 8618 chr8 145138636 + 51534502 51534641 SVA_E 1901 + 981 1156 36192 20 0 1 22 2 4 18 4 0 13 8 43 48 3 5 1 chain 3224 chr8 145138636 + 51534709 51534761 SVA_E 1901 + 1225 1277 36192 52 chain 50252 chr8 145138636 + 51604110 51604660 L1PA4 6152 + 5602 6152 29466 550 chain 474004 chr8 145138636 + 51636838 51642366 L1PA3long 6157 + 631 6157 3766 76 5 12 308 8 0 19 1 0 142 62 62 642 0 1 1295 7 6 1836 0 1 233 1 0 818 1 0 69 0 1 5 chain 41170 chr8 145138636 + 51642405 51642889 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145138636 + 51800557 51801665 MER11A 1151 + 0 1145 20325 196 2 0 98 0 11 11 34 0 72 0 1 22 0 1 147 1 0 186 0 4 85 1 59 192 7 6 54 chain 103968 chr8 145138636 + 51813835 51815541 L1PB1 5432 + 3931 5420 17825 88 4 0 130 2 0 56 0 2 227 0 1 164 0 6 5 2 0 11 0 1 58 182 5 20 11 4 94 14 22 221 1 2 4 1 0 51 3 0 14 3 0 21 1 0 1 4 0 9 0 3 5 6 2 11 2 0 42 8 0 4 4 0 22 1 0 38 3 5 14 5 2 17 11 4 10 3 1 4 1 0 12 2 0 26 1 0 21 1 0 13 1 0 16 chain 209442 chr8 145138636 + 51823658 51826531 L1PA7 6471 + 3921 6470 9368 285 1 0 410 0 1 362 1 3 112 0 1 504 0 4 18 0 3 61 341 20 79 2 3 10 0 4 80 11 0 256 1 0 155 1 0 36 5 0 142 chain 17453 chr8 145138636 + 51878138 51878364 MER30 238 + 0 238 59291 110 2 13 68 0 1 46 chain 42725 chr8 145138636 + 51933726 51934217 MER9a1 513 + 0 513 32932 249 0 22 242 chain 44682 chr8 145138636 + 51936146 51936698 MER41A 554 + 0 554 31748 168 0 1 200 1 0 136 0 1 38 0 1 9 chain 54670 chr8 145138636 + 51992268 51993160 L1PA11 4918 + 3731 4578 27986 171 3 0 5 5 4 4 1 0 12 0 1 67 6 7 5 0 2 32 22 0 352 2 1 13 2 0 53 31 28 16 48 35 15 1 0 13 2 0 11 chain 314072 chr8 145138636 + 52028186 52031766 L1PA4 6152 + 2551 6141 6528 37 0 1 1100 5 4 245 0 1 204 1 0 97 0 1 136 0 1 231 0 5 543 1 2 217 1 3 762 chain 16398 chr8 145138636 + 52048094 52048307 L1PA8 5853 + 5644 5853 60522 35 1 0 9 1 0 52 2 1 19 1 0 93 chain 30524 chr8 145138636 + 52234215 52235111 L1PB1 5432 + 4881 5427 41540 48 290 0 122 4 3 49 40 14 17 1 0 12 1 0 11 6 2 9 3 1 51 2 1 11 5 4 43 2 1 16 2 0 6 21 11 14 2 0 5 1 0 14 2 0 24 1 0 14 11 10 10 1 0 18 2 0 5 chain 14738 chr8 145138636 + 52281695 52282034 L1PB1 5432 + 5114 5423 62617 32 1 0 11 18 12 51 18 16 45 1 0 15 1 0 6 65 50 18 1 0 22 1 0 12 1 0 15 1 0 4 chain 30912 chr8 145138636 + 52317927 52318468 L1PA11 4918 + 4068 4567 41209 213 1 2 11 16 20 14 29 0 65 3 2 77 2 0 16 2 1 19 4 0 9 8 3 10 13 9 15 1 0 13 chain 18825 chr8 145138636 + 52388768 52388971 L1PA3long 6157 + 5950 6153 57746 203 chain 3562 chr8 145138636 + 52432035 52432105 MER33 330 + 81 147 94731 33 16 12 21 chain 4895 chr8 145138636 + 52442850 52442978 MER53 195 + 39 180 86179 31 55 68 42 chain 8678 chr8 145138636 + 52470420 52470688 MSTB2 466 + 74 454 73264 41 128 239 23 8 9 68 chain 4017 chr8 145138636 + 52502420 52502484 MLT1B 390 + 25 89 91324 19 0 7 9 7 0 29 chain 539548 chr8 145138636 + 52506484 52512618 L1PA5 6144 + 3 6139 1368 477 0 1 242 0 1 2591 0 1 177 10 9 1381 0 1 286 1 0 969 chain 234395 chr8 145138636 + 52527894 52530770 HERVL-int 5654 + 2637 5654 8622 82 4 0 193 0 1 197 0 132 564 9 12 144 0 1 224 3 4 310 0 1 309 1 2 89 0 3 42 1 2 485 0 1 219 chain 32258 chr8 145138636 + 52530770 52531297 MLT2A1 477 + 0 477 40140 142 0 1 26 1 5 36 4 2 170 0 2 21 89 31 22 1 0 6 0 4 9 chain 39456 chr8 145138636 + 52545121 52545783 MER4A1_ 611 + 0 611 35038 44 0 1 48 1 2 27 0 2 86 3 0 21 0 2 26 30 36 87 94 34 195 chain 28991 chr8 145138636 + 52556365 52556674 AluYg6 310 + 0 308 43338 131 1 0 177 chain 43172 chr8 145138636 + 52632678 52633283 MER4A1_ 611 + 0 611 32671 50 1 3 51 1 0 17 0 20 64 8 0 89 17 0 86 1 0 39 0 8 81 0 3 100 chain 9250 chr8 145138636 + 52682288 52682409 THE1A 353 + 228 347 72023 50 1 0 38 1 0 31 chain 72449 chr8 145138636 + 52687912 52688935 MER11A 1151 + 0 1151 23440 55 0 99 76 0 4 60 4 0 81 1 0 68 0 1 94 0 7 127 3 0 12 20 21 109 15 48 22 15 0 33 2 4 190 7 11 29 chain 3017 chr8 145138636 + 52727695 52727833 L1MB7 1623 + 1448 1587 99669 23 89 90 26 chain 19506 chr8 145138636 + 52891689 52892034 MLT1B 390 + 21 386 57018 29 1 2 24 7 41 10 19 0 58 5 13 70 11 12 45 5 0 61 chain 3062 chr8 145138636 + 52961837 52961874 LTR12C 1709 + 932 969 99207 37 chain 33730 chr8 145138636 + 52991728 52992163 LOR1b 457 + 0 450 38895 26 0 3 8 0 11 50 0 1 32 1 0 208 0 1 110 chain 10388 chr8 145138636 + 53008351 53008473 L1PA8 5853 + 5733 5853 69640 9 1 0 18 1 0 93 chain 193837 chr8 145138636 + 53019974 53022584 L1PA10 4194 + 322 2963 9936 7 0 1 6 2 0 20 1 0 6 2 1 11 3 1 5 9 0 15 10 0 8 1 0 82 2 0 360 0 1 764 0 15 99 0 1 27 30 16 49 14 11 53 0 4 166 0 1 348 0 4 178 7 54 30 5 9 126 2 0 162 chain 145300 chr8 145138636 + 53057678 53059985 L1PA7 6471 + 4417 6212 12666 157 1 0 5 0 1 7 0 1 75 0 12 187 1 8 282 1 2 467 1 0 173 533 0 44 0 1 373 chain 52261 chr8 145138636 + 53062015 53062669 LTR12_ 688 + 15 681 28797 215 0 1 83 2 1 163 0 4 155 0 8 36 chain 56123 chr8 145138636 + 53064903 53065516 L1PA3long 6157 + 5543 6156 27529 613 chain 90281 chr8 145138636 + 53080873 53081871 L1PA3long 6157 + 4777 5774 19628 442 1 0 555 chain 26251 chr8 145138636 + 53082955 53083299 THE1B 368 + 0 346 47350 15 2 0 22 0 5 130 2 1 173 chain 4517 chr8 145138636 + 53085271 53085325 Charlie1a 1436 + 1066 1120 88227 54 chain 3165 chr8 145138636 + 53233843 53233884 MER5B 177 + 136 177 98240 41 chain 23759 chr8 145138636 + 53287886 53288174 AluSp 311 + 11 297 51181 115 2 0 171 chain 28975 chr8 145138636 + 53292336 53292644 AluYg6 310 + 0 308 43371 308 chain 41665 chr8 145138636 + 53318167 53318777 LTR9B 643 + 0 622 33583 136 0 1 66 7 6 56 0 1 41 0 1 42 0 4 68 43 48 22 0 1 4 2 0 3 7 0 10 0 10 83 1 0 19 chain 35343 chr8 145138636 + 53326714 53327195 MER9a3 513 + 0 513 37806 18 0 2 90 0 1 68 12 13 66 1 0 16 4 31 114 0 1 13 0 1 79 chain 553228 chr8 145138636 + 53337666 53343810 L1PA3long 6157 + 11 6157 534 3158 0 1 217 0 1 127 0 1 49 1 4 6 3 0 1809 1 0 773 chain 244407 chr8 145138636 + 53344423 53347856 MER61-int 3695 + 256 3695 8369 13 14 5 136 1 2 125 5 0 6 4 8 91 2 0 108 1 0 98 7 5 207 4 7 65 0 5 89 0 3 4 0 1 65 28 2 143 1 0 81 0 1 15 2 0 284 0 1 277 0 3 77 0 3 25 12 15 42 0 1 4 2 1 145 1 2 10 1 0 67 10 22 95 12 24 124 1 0 90 14 13 245 1 0 30 18 17 95 0 4 91 3 6 61 2 1 15 4 5 169 4 3 35 0 6 8 13 7 31 chain 478481 chr8 145138636 + 53369010 53374513 L1PA4 6152 + 0 5516 3668 213 1 2 260 3 7 462 0 7 89 1 0 408 0 1 2600 1 0 188 0 1 427 1 0 428 0 1 351 0 1 70 chain 9526 chr8 145138636 + 53418907 53419020 THE1B 368 + 255 368 71421 113 chain 64270 chr8 145138636 + 53446083 53446829 L1PA5 6144 + 5397 6144 25356 604 0 1 142 chain 14345 chr8 145138636 + 53454178 53454371 L1PA8A 6298 + 6098 6290 63121 83 5 4 105 chain 62654 chr8 145138636 + 53457127 53457910 L1PA7 6471 + 5688 6470 25722 12 6 3 175 2 0 94 0 1 280 0 1 67 7 6 127 1 4 12 chain 56321 chr8 145138636 + 53459342 53460056 LTR12 884 + 0 884 27482 55 0 173 149 2 0 332 1 0 175 chain 469992 chr8 145138636 + 53460084 53465846 HERV9-int 5642 + 0 5642 3859 653 1 0 142 2 0 37 0 1 220 80 0 54 3 0 169 0 2 956 0 1 244 5 7 71 17 12 250 0 1 68 0 1 76 0 1 314 0 1 876 0 2 915 0 1 153 2 1 218 15 14 38 2 0 26 1 0 60 1 0 13 35 5 19 12 6 14 chain 61725 chr8 145138636 + 53468446 53469199 LTR12 884 + 0 884 25935 91 0 132 154 2 0 162 0 1 344 chain 3471 chr8 145138636 + 53469312 53469353 MER21B 843 + 629 670 95452 41 chain 149443 chr8 145138636 + 53562205 53564468 L1PREC2 3366 + 139 2394 12392 31 1 0 10 2 0 20 7 2 7 1 0 24 1 0 14 13 10 32 26 25 91 1 0 46 0 1 5 2 11 208 2 6 36 55 56 71 0 2 24 6 7 18 0 1 4 1 0 51 29 28 24 4 7 191 0 5 7 1 0 21 0 3 44 0 1 13 6 0 12 11 10 256 2 1 184 5 6 7 1 0 64 0 1 4 1 0 380 12 0 166 1 0 7 chain 29628 chr8 145138636 + 53570034 53570433 MSTA-int 1630 + 0 411 42454 13 1 0 127 8 9 80 0 12 170 chain 530155 chr8 145138636 + 53609643 53615521 L1PA3long 6157 + 136 6152 1821 16 0 1 11 6 7 570 1 0 35 0 128 164 0 2 381 1 0 2497 0 7 1278 0 1 918 chain 26530 chr8 145138636 + 53615755 53616172 MER61F 604 + 0 447 46934 48 4 5 22 9 44 21 23 11 115 0 1 31 15 21 30 1 0 98 chain 36984 chr8 145138636 + 53617071 53617579 MER9a3 513 + 0 513 36745 18 0 2 91 0 1 67 12 13 64 1 0 119 1 3 56 4 5 43 1 0 31 chain 392997 chr8 145138636 + 53618905 53623586 HERVK9-int 4720 + 36 4718 5269 13 12 8 67 1 0 7 2 1 30 1 0 120 4 1 1327 12 11 366 0 13 240 0 1 1009 0 6 40 5 4 7 2 0 71 4 0 1177 1 0 163 chain 38195 chr8 145138636 + 53623588 53624085 MER9a3 513 + 0 513 35909 18 0 2 12 0 12 40 4 3 24 0 1 43 10 11 11 0 1 80 1 0 176 0 1 78 chain 15895 chr8 145138636 + 53661587 53661807 MER30 238 + 0 237 61161 107 4 0 8 2 23 99 chain 322421 chr8 145138636 + 53679726 53683366 L1PA4 6152 + 2240 5877 6361 175 4 0 101 9 0 300 0 1 338 0 1 96 0 10 211 1 0 42 0 1 890 2 0 1471 chain 7032 chr8 145138636 + 53685512 53685612 L1MB5 1630 + 1140 1240 77494 26 1 0 45 4 5 24 chain 4358 chr8 145138636 + 53760704 53760759 MER49 923 + 39 93 89120 13 1 0 41 chain 77820 chr8 145138636 + 53766123 53767169 MER11C 1089 + 0 1063 22139 247 0 9 61 0 4 64 1 0 178 42 41 68 0 1 17 1 5 4 1 0 38 0 1 127 0 1 54 1 0 117 0 1 25 chain 5377 chr8 145138636 + 53767196 53767373 L1MC2 1988 + 1816 1966 83813 16 7 3 6 3 0 6 1 0 46 7 0 10 59 47 16 chain 8365 chr8 145138636 + 53914718 53914819 U6 107 + 0 102 73981 48 0 1 53 chain 508193 chr8 145138636 + 53932184 53938552 L1PA7 6471 + 353 6469 2837 47 5 7 84 0 2 169 2 0 224 0 7 220 0 9 91 0 4 21 0 1 256 0 3 311 0 1 174 0 1 538 0 1 92 0 1 20 1 2 77 3 0 677 0 1 81 7 11 42 0 1 308 1 0 65 9 15 39 0 2 985 0 5 312 288 0 361 1 0 428 0 1 355 8 0 54 2 0 10 chain 19880 chr8 145138636 + 53937061 53937293 L1PA5 6144 + 5904 6135 56562 82 1 0 149 chain 58017 chr8 145138636 + 54055353 54056632 L1MA1 4479 + 3280 4184 26959 87 0 9 13 3 0 5 2 1 17 0 3 5 75 25 73 1 0 3 304 0 193 7 0 25 2 0 16 1 0 33 2 0 41 21 19 11 1 0 9 0 5 74 1 0 5 3 0 29 4 5 92 1 0 29 2 0 35 5 4 5 1 0 5 3 0 16 7 0 12 chain 4836 chr8 145138636 + 54072566 54072619 MER41B 635 + 498 551 86511 53 chain 186840 chr8 145138636 + 54074260 54076515 HERVK9-int 4720 + 1372 4720 10260 114 0 1086 108 1 4 62 0 4 39 1 0 361 4 0 155 19 22 263 2 0 23 1 2 84 0 3 229 0 2 760 2 0 27 chain 42642 chr8 145138636 + 54076515 54077013 MER9a1 513 + 0 513 32976 19 2 1 136 0 16 341 chain 121051 chr8 145138636 + 54085003 54086444 SVA_B 1603 + 0 1603 15340 29 0 24 95 0 14 350 0 8 256 0 121 30 1 0 14 2 1 33 6 1 14 1 0 19 2 0 154 0 4 21 0 2 248 3 4 155 2 0 6 chain 80917 chr8 145138636 + 54089876 54090774 MER11D 897 + 0 897 21456 372 1 0 525 chain 2939 chr8 145138636 + 54102615 54102676 LTR12F 595 + 239 282 100512 23 19 1 19 chain 40165 chr8 145138636 + 54103838 54105793 MER41A 554 + 0 554 34545 242 1438 16 132 0 21 143 chain 7830 chr8 145138636 + 54104670 54104782 LTR12C 1709 + 776 928 55172 21 0 40 91 chain 29676 chr8 145138636 + 54104782 54105374 LTR12C 1709 + 650 1541 42397 168 1 0 19 1 0 16 1 0 130 204 507 4 1 0 47 chain 107423 chr8 145138636 + 54125106 54126460 SVA_F 1814 + 553 1814 17392 188 0 40 116 0 1 50 3 18 35 1 0 6 1 2 110 99 0 94 50 0 601 chain 4445 chr8 145138636 + 54125616 54125666 SVA_F 1814 + 992 1043 77215 46 0 1 4 chain 2782 chr8 145138636 + 54125685 54125715 SVA_F 1814 + 962 992 76343 30 chain 4311 chr8 145138636 + 54125809 54125859 SVA_F 1814 + 1115 1164 77365 8 1 0 41 chain 41676 chr8 145138636 + 54151037 54151973 MER41B 635 + 0 635 33573 16 7 8 30 0 9 62 12 13 73 0 3 81 3 4 144 1 5 66 324 0 35 6 7 39 0 3 37 chain 26766 chr8 145138636 + 54159959 54160315 THE1A 353 + 0 353 46590 110 1 0 92 1 0 75 2 1 75 chain 131571 chr8 145138636 + 54160315 54161885 THE1A-int 1579 + 0 1579 13863 221 0 2 412 2 3 4 0 1 851 0 5 80 chain 27147 chr8 145138636 + 54161885 54162241 THE1A 353 + 0 353 46050 111 1 0 91 1 0 7 12 11 133 chain 18778 chr8 145138636 + 54167803 54168135 L1PA15 4387 + 4008 4327 57812 96 1 0 26 1 0 55 1 0 14 10 6 11 11 10 31 23 20 37 3 1 12 chain 24059 chr8 145138636 + 54176885 54177163 AluSp 311 + 16 295 50711 253 0 1 25 chain 7144 chr8 145138636 + 54179832 54179966 MER31A 484 + 193 327 77124 21 7 32 10 25 0 71 chain 6194 chr8 145138636 + 54238416 54238576 MLT1C 463 + 251 427 80377 17 70 86 73 chain 134888 chr8 145138636 + 54409606 54411082 L1PA3long 6157 + 4679 6157 13549 1329 5 7 142 chain 12817 chr8 145138636 + 54419830 54420108 MER2 342 + 25 320 65419 23 104 120 127 2 3 22 chain 19795 chr8 145138636 + 54472192 54472431 AluSp 311 + 12 289 56684 36 0 38 203 chain 18765 chr8 145138636 + 54481265 54481518 AluY 311 + 51 275 57827 78 29 0 146 chain 53107 chr8 145138636 + 54504354 54505024 L1PA8A 6298 + 5619 6291 28539 395 0 1 152 7 16 9 8 0 99 chain 7560 chr8 145138636 + 54542463 54542590 MER85 139 + 0 139 75962 31 11 12 53 1 13 8 1 0 22 chain 190017 chr8 145138636 + 54667813 54670034 L1PA6 6164 + 3477 6161 10113 390 0 464 616 6 4 158 1 0 4 3 5 197 0 1 686 0 5 7 10 4 143 chain 11000 chr8 145138636 + 54685630 54685776 MER30 238 + 65 237 68557 45 1 24 62 0 3 38 chain 95452 chr8 145138636 + 54687916 54699046 L1PA7 6471 + 4996 6468 18849 68 9661 0 557 0 3 51 0 1 89 6 6 176 1 0 521 chain 5144 chr8 145138636 + 54736788 54736873 MER5A1 166 + 80 165 84941 52 10 8 5 0 2 18 chain 40579 chr8 145138636 + 54750496 54751148 LTR12F 595 + 0 595 34240 103 0 1 1 42 0 40 2 0 16 25 0 17 16 7 16 14 23 10 0 7 46 7 10 26 0 1 271 chain 3158 chr8 145138636 + 54754579 54754655 MADE1 96 + 1 95 98285 23 2 3 19 3 20 29 chain 5958 chr8 145138636 + 54775994 54776186 MER2 342 + 45 258 81237 17 100 121 75 chain 65662 chr8 145138636 + 54875053 54876048 LTR12D 1347 + 0 1347 25039 112 2 1 82 24 32 28 0 1 9 14 16 12 12 48 52 8 29 101 14 45 17 6 5 104 0 17 118 1 2 115 3 207 57 0 33 104 chain 101690 chr8 145138636 + 54929883 54931512 L1PB1 5432 + 3730 5422 18101 165 0 1 96 16 6 42 0 5 7 10 5 13 5 0 364 0 1 52 2 147 171 3 1 85 12 12 92 1 3 72 0 1 27 38 9 8 15 0 16 13 15 10 9 5 7 2 0 52 18 16 13 10 11 21 1 0 15 2 0 6 22 12 13 2 0 5 1 0 12 2 0 25 1 0 22 1 0 13 1 0 18 chain 388094 chr8 145138636 + 54976590 54981836 L1PA7 6471 + 3 6468 5349 114 3 0 286 1 3 269 4 7 16 19 17 456 10 0 11 1 0 4 13 28 693 0 1 450 18 19 177 0 1 25 0 2 59 0 1 10 0 1 42 7 0 186 0 10 177 0 1 103 0 13 33 1 2 62 6 5 200 1 0 10 2 0 504 2 1 20 0 1 74 0 1 7 295 0 28 1 14 361 0 1477 474 2 0 9 chain 434058 chr8 145138636 + 54986000 54991162 L1PA6 6164 + 0 6162 4685 687 2 1 56 0 1011 224 0 1 267 0 1 76 25 0 5 1 0 483 0 9 362 1 2 4 0 1 37 0 1 257 1 2 304 0 1 460 1 2 693 6 4 23 5 0 86 0 1 257 0 4 82 1 0 84 0 1 361 5 6 156 1 0 4 0 1 145 chain 6813 chr8 145138636 + 55011892 55012053 MLT1A 405 + 223 383 78268 63 65 64 33 chain 23648 chr8 145138636 + 55044343 55044618 L1PA5 6144 + 5869 6144 51362 275 chain 546493 chr8 145138636 + 55049901 55055999 L1PA3long 6157 + 6 6157 941 250 0 47 554 4 5 584 2 1 1808 0 2 1097 0 4 1799 chain 36213 chr8 145138636 + 55057857 55058414 LTR12_ 688 + 0 688 37262 97 8 24 127 44 45 85 5 4 20 0 103 57 0 2 97 1 11 16 chain 87439 chr8 145138636 + 55073455 55074491 MER11C 1089 + 0 1054 20143 247 0 9 61 0 4 369 0 4 43 0 1 316 chain 5974 chr8 145138636 + 55075613 55075682 MER6 865 + 630 699 81178 69 chain 8084 chr8 145138636 + 55079615 55079843 LTR56 451 + 6 248 74671 6 2 0 53 1 0 6 104 121 56 chain 22683 chr8 145138636 + 55130885 55131150 AluSp 311 + 8 273 52844 265 chain 11628 chr8 145138636 + 55287999 55288157 MER30 238 + 64 237 67520 32 11 26 115 chain 11100 chr8 145138636 + 55329308 55329499 MER30 238 + 37 238 68406 13 10 9 32 0 3 17 4 15 58 9 6 48 chain 43973 chr8 145138636 + 55420295 55420788 L1PA3long 6157 + 5656 6150 32145 183 0 1 310 chain 471591 chr8 145138636 + 55460494 55465834 L1PA4 6152 + 0 5338 3819 503 0 1 22 0 4 28 1 2 474 1 0 209 0 1 2816 10 1 759 0 1 517 chain 18488 chr8 145138636 + 55470261 55470615 THE1B 368 + 0 368 58117 11 2 0 95 10 11 52 67 81 59 6 7 52 chain 443725 chr8 145138636 + 55476428 55481588 L1PA4 6152 + 7 5183 4502 135 15 31 203 9 8 196 1 0 128 0 1 93 0 3 31 17 0 444 0 1 422 0 5 136 0 1 919 0 1 521 0 1 193 1 0 32 1 0 836 0 4 429 0 1 8 14 15 49 0 1 282 0 1 45 chain 28940 chr8 145138636 + 55488657 55488963 AluYa5 310 + 0 307 43421 141 0 1 165 chain 47810 chr8 145138636 + 55548856 55549412 MLT2A2 560 + 0 560 30358 203 0 1 221 1 0 125 0 4 6 chain 24106 chr8 145138636 + 55550459 55550864 L1PA14 3548 + 3071 3465 50636 40 12 8 12 2 0 6 1 0 84 1 0 8 1 13 64 0 1 25 1 0 8 10 6 33 4 2 12 1 0 3 1 0 18 1 0 41 6 0 10 chain 55181 chr8 145138636 + 55566435 55567344 L1PB1 5432 + 4557 5422 27818 58 0 5 6 3 0 179 0 8 201 0 2 66 55 32 18 5 4 8 1 0 14 28 19 43 2 1 16 1 0 44 1 0 15 2 0 6 15 6 18 9 6 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 32154 chr8 145138636 + 55571485 55571964 MER1A 529 + 0 523 40226 16 20 26 38 15 55 322 3 0 5 8 9 52 chain 345915 chr8 145138636 + 55573045 55577584 L1PA6 6164 + 1795 6155 5969 153 1 5 379 6 8 145 15 0 61 1 0 83 0 1 60 7 1 360 0 1 15 1 2 122 1 0 49 14 18 289 0 1 13 0 1 134 0 1 553 315 1 1062 0 3 91 0 3 319 1 149 42 21 2 11 0 4 65 2 1 62 1 5 85 chain 13273 chr8 145138636 + 55584226 55584582 L1PA11 4918 + 4314 4629 64674 19 12 5 50 7 6 79 3 1 13 2 1 14 27 18 10 13 9 15 1 0 13 2 0 11 46 32 19 chain 3566 chr8 145138636 + 55612698 55612743 L1MB7 1623 + 1385 1429 94681 37 1 0 7 chain 471499 chr8 145138636 + 55615747 55621609 L1PA4 6152 + 10 5855 3821 117 0 14 186 0 3 136 5 6 413 0 6 65 25 0 220 23 14 21 47 46 294 2 0 197 0 1 4 9 8 164 0 1 592 9 1 412 1 0 4 0 1 102 0 1 132 1 0 549 0 3 2132 chain 113850 chr8 145138636 + 55638878 55640137 L1PA4 6152 + 4255 5515 16571 588 0 1 671 chain 518461 chr8 145138636 + 55656150 55662295 L1PA6 6164 + 4 6157 2342 222 14 6 277 0 1 279 0 17 237 1 2 266 6 0 512 1 0 344 1 2 164 3 0 578 0 1 155 0 1 117 2 0 4 0 1 346 0 1 757 2 1 984 0 8 111 1 0 170 2 0 589 chain 5324 chr8 145138636 + 55677247 55677324 MADE1 96 + 2 95 84077 32 1 17 44 chain 16026 chr8 145138636 + 55686336 55686650 MER1B 344 + 42 344 60996 15 5 6 12 20 28 88 10 11 29 9 0 36 31 18 59 chain 39801 chr8 145138636 + 55706082 55706545 LTR2 463 + 0 463 34824 463 chain 157817 chr8 145138636 + 55708131 55709863 L1PA2 6032 + 3994 5727 11892 771 0 1 961 chain 419097 chr8 145138636 + 55710196 55715587 Harlequin-int 5206 + 125 5206 4892 20 2 1 160 0 1 47 23 16 308 1 0 241 316 0 278 8 11 1485 4 3 63 1 0 530 3 4 5 1 0 22 6 6 246 2 1 6 0 1 48 0 5 389 1 4 938 4 5 215 0 4 18 chain 38799 chr8 145138636 + 55715587 55716049 LTR2 463 + 0 463 35500 455 0 1 7 chain 328784 chr8 145138636 + 55717493 55722823 L1PB1 5432 + 95 5430 6236 28 8 8 25 21 18 588 0 1 435 4 0 197 1 0 7 8 0 7 8 10 317 1 0 129 0 3 181 0 1 174 11 0 9 0 10 9 556 938 493 0 1 48 2 0 224 1 0 107 5 0 73 2 1 480 7 4 367 0 1 5 10 11 93 331 8 8 1 0 24 1 0 9 27 20 52 1 0 18 1 0 42 2 1 16 3 0 7 15 6 18 8 5 16 14 12 10 1 0 17 19 17 16 1 0 4 1 0 6 chain 9077 chr8 145138636 + 55891371 55891653 L1MB3 1562 + 1272 1524 72385 20 90 89 37 42 15 5 2 0 30 1 0 19 0 1 36 chain 24679 chr8 145138636 + 55896350 55896661 L1PA7 6471 + 6156 6466 49763 166 14 13 131 chain 6450 chr8 145138636 + 56042375 56042456 MADE1 96 + 0 96 79514 45 0 15 36 chain 19486 chr8 145138636 + 56048684 56048973 AluSp 311 + 11 306 57048 59 0 5 99 16 15 80 11 13 24 chain 4583 chr8 145138636 + 56057450 56057503 Tigger6a 1079 + 646 699 87888 53 chain 24345 chr8 145138636 + 56107348 56107750 LTR7Y 441 + 0 427 50255 74 3 12 74 80 96 171 chain 3228 chr8 145138636 + 56142654 56142708 MER52A 1651 + 890 936 97688 26 8 0 20 chain 78907 chr8 145138636 + 56180761 56181733 L1PA7 6471 + 5509 6469 21896 111 0 8 4 1 0 51 20 8 617 7 1 11 0 2 134 4 1 12 chain 2757 chr8 145138636 + 56255718 56255916 MLT1F2 592 + 163 415 101920 23 147 200 5 0 1 23 chain 73000 chr8 145138636 + 56274714 56275830 MER11A 1151 + 0 1145 23315 79 13 21 100 1 0 30 1 0 64 2 14 19 0 2 21 37 0 332 6 9 11 3 4 22 25 1 14 0 4 67 0 1 19 7 65 85 15 14 66 0 6 17 1 0 19 1 0 39 chain 215312 chr8 145138636 + 56275841 56278778 L1P3 4156 + 1504 4139 9164 153 0 1 298 0 3 672 5 7 780 0 2 273 316 0 401 13 19 26 chain 17631 chr8 145138636 + 56286466 56286770 L1PA17 2846 + 2388 2680 59088 111 4 0 18 40 37 38 2 0 6 3 2 32 1 0 18 1 0 30 chain 88163 chr8 145138636 + 56344996 56346010 L1PA4 6152 + 3918 4936 20015 696 0 4 318 chain 72715 chr8 145138636 + 56360561 56361439 MER11D 897 + 0 897 23379 283 5 0 303 8 31 160 0 1 119 chain 541580 chr8 145138636 + 56415223 56421244 L1PA3long 6157 + 0 6152 1228 152 0 1 623 0 128 1671 0 3 2107 0 1 698 1 0 625 1 0 143 chain 368931 chr8 145138636 + 56429110 56433444 L1P1 4361 + 6 4341 5678 1017 0 1 743 7 10 159 1 0 379 0 1 50 0 1 20 0 1 777 5 1 221 0 1 762 0 1 147 1 0 7 1 0 23 2 1 12 chain 21925 chr8 145138636 + 56439025 56439435 LTR7 482 + 0 482 53934 69 10 99 12 51 0 20 11 1 10 11 53 151 16 18 49 chain 11688 chr8 145138636 + 56480849 56480989 MER85 139 + 0 139 67416 93 1 0 46 chain 176586 chr8 145138636 + 56551670 56553706 L1P1 4361 + 1962 4005 10746 829 0 1 373 2 1 160 0 1 445 4 10 223 chain 24430 chr8 145138636 + 56567555 56567923 THE1B 368 + 0 368 50129 169 1 0 29 0 3 8 22 25 6 1 0 66 17 13 49 chain 56133 chr8 145138636 + 56581011 56581753 MER4E1 777 + 0 769 27523 25 2 0 17 5 18 269 0 19 88 0 1 8 11 0 93 6 13 218 chain 53630 chr8 145138636 + 56583237 56583897 PABL_A 660 + 0 660 28355 230 1 0 34 0 1 308 0 1 13 6 5 68 chain 8983 chr8 145138636 + 56620856 56620957 L1PA2 6032 + 5931 6032 72593 101 chain 8769 chr8 145138636 + 56626121 56626232 MER31A 484 + 5 116 73060 111 chain 12154 chr8 145138636 + 56654148 56654340 MER72 723 + 4 199 66562 73 2 0 15 1 2 24 17 21 60 chain 4194 chr8 145138636 + 56733976 56734024 L1PA4 6152 - 444 492 90170 48 chain 15054 chr8 145138636 + 56815800 56815970 L1PA2 6032 + 5862 6032 62198 170 chain 27014 chr8 145138636 + 56823634 56823995 THE1B 368 + 0 356 46249 172 2 1 25 3 0 94 2 1 63 chain 210779 chr8 145138636 + 56847192 56849894 L1PA10 4194 + 381 3066 9326 12 8 1 9 1 0 82 6 4 8 0 8 374 7 1 440 4 0 151 1 0 93 1 0 144 1 2 73 0 1 43 0 3 34 1 0 24 6 0 415 7 8 83 1 0 235 0 1 33 1 0 199 1 0 204 chain 13683 chr8 145138636 + 56883357 56883623 L1PB1 5432 + 5159 5406 64034 9 2 0 52 2 1 16 1 0 10 0 5 29 1 0 12 6 3 13 10 0 17 3 1 5 1 0 14 2 0 24 2 1 21 1 0 8 0 1 5 chain 10047 chr8 145138636 + 56917083 56917190 U6 107 + 0 107 70311 107 chain 53552 chr8 145138636 + 56917190 56917775 L1PA3long 6157 + 5572 6157 28377 585 chain 69374 chr8 145138636 + 56918974 56919792 L1PA7 6471 + 5642 6459 24146 679 1 0 138 chain 107096 chr8 145138636 + 56937298 56938758 L1P2 5180 + 2 1482 17421 148 1 0 44 10 9 41 1 0 159 4 5 6 1 0 32 8 0 69 1 0 50 1 0 168 0 1 53 0 15 90 8 12 321 21 33 10 0 1 213 chain 61576 chr8 145138636 + 56938804 56939567 L1PA6 6164 + 5403 6161 25966 258 1 0 6 4 1 11 1 0 323 19 19 140 chain 22037 chr8 145138636 + 56961586 56961852 AluSp 311 + 31 294 53787 101 3 0 162 chain 35454 chr8 145138636 + 57003499 57004019 MER9a3 513 + 0 505 37750 18 0 2 26 0 1 64 0 1 4 5 14 80 29 3 43 4 3 174 2 3 9 2 0 60 chain 21033 chr8 145138636 + 57012312 57012558 L1PA5 6144 + 5898 6144 55077 246 chain 159229 chr8 145138636 + 57021202 57023163 SVA_D 2077 + 1 2064 11794 18 1 0 18 0 5 6 1 0 9 1 0 827 0 83 20 0 51 153 1 31 8 1 0 117 1 0 10 2 1 30 0 1 4 9 8 43 75 0 267 6 0 212 0 20 121 chain 1691 chr8 145138636 + 57022523 57022557 SVA_D 2077 + 1185 1219 48769 34 chain 74789 chr8 145138636 + 57023744 57024667 L1PA4 6152 + 4406 5282 22894 507 65 18 351 chain 106056 chr8 145138636 + 57084028 57085624 L1PB1 5432 + 3914 5424 17555 284 6 5 365 2 1 57 3 0 199 8 2 56 20 16 92 8 5 99 11 10 10 35 0 21 1 0 11 20 15 5 2 0 53 2 1 16 1 0 43 1 0 16 1 0 4 2 0 13 47 33 24 1 0 21 1 0 11 1 0 18 1 0 4 chain 27855 chr8 145138636 + 57086048 57086452 L1MA3 4352 + 2262 2660 45101 51 1 0 80 2 1 63 0 1 54 5 0 45 4 5 26 1 0 72 chain 56711 chr8 145138636 + 57100845 57101594 L1MA1 4479 + 1235 1990 27354 155 0 1 293 3 4 56 0 2 49 1 3 153 3 2 6 0 1 30 chain 45866 chr8 145138636 + 57108996 57109591 L1PA10 4194 + 3558 4150 31124 320 8 6 30 0 1 189 0 1 11 3 0 34 chain 10652 chr8 145138636 + 57173314 57173463 L1PA15-16 3068 + 329 477 69124 24 2 0 43 8 9 72 chain 25911 chr8 145138636 + 57188916 57189359 MER1A 529 + 65 516 47845 13 3 0 5 47 52 79 1 0 3 7 0 153 0 3 27 1 7 49 12 17 43 chain 3513 chr8 145138636 + 57236158 57236199 Ricksha_c 1012 + 89 130 95147 41 chain 16069 chr8 145138636 + 57314923 57315162 L1PA8 5853 + 5618 5853 60934 59 3 2 10 16 15 36 2 1 21 1 0 91 chain 146443 chr8 145138636 + 57319127 57320950 L1P1 4361 + 4 1835 12581 198 3 4 350 4 9 468 0 1 44 2 1 354 5 6 377 0 1 18 chain 27686 chr8 145138636 + 57390768 57391193 LTR7 482 + 0 475 45337 87 0 1 13 15 14 117 1 22 10 1 32 4 1 0 54 1 0 17 1 0 48 13 14 42 chain 37768 chr8 145138636 + 57420193 57420605 L1PA2 6032 + 5619 6032 36230 322 0 1 90 chain 221315 chr8 145138636 + 57457928 57461055 HERVK22-int 3844 + 313 3463 8998 598 4 5 85 9 0 266 0 1 55 5 0 9 16 15 71 0 1 660 0 3 188 0 1 7 1 0 138 0 85 99 9 0 7 0 1 4 8 16 195 0 1 223 1 0 71 2 1 5 1 0 18 1 0 31 5 4 21 22 20 19 4 0 10 1 0 41 6 4 14 5 1 4 1 0 4 1 0 6 5 0 12 2 0 5 2 0 5 2 0 3 2 0 9 1 0 8 63 47 20 7 4 4 1 0 25 chain 235846 chr8 145138636 + 57485170 57488109 L1PA7 6471 + 3506 6465 8576 98 1 3 72 9 0 156 0 1 79 6 7 293 1 0 70 14 21 62 15 16 103 0 1 84 1 0 6 0 1 92 0 8 307 0 2 368 0 1 257 0 4 20 0 2 825 chain 37373 chr8 145138636 + 57528537 57529011 MER4A1 472 + 0 472 36503 25 1 0 201 2 1 245 chain 188073 chr8 145138636 + 57567707 57569834 L1PA5 6144 + 3383 5513 10207 846 0 1 639 0 1 497 7 8 138 chain 3425 chr8 145138636 + 57603384 57603421 MLT1F 544 + 204 241 95855 37 chain 489028 chr8 145138636 + 57694863 57701158 L1PA7 6471 + 0 6375 3442 14 0 2 37 1 0 134 11 11 97 29 6 104 23 13 72 3 24 96 3 4 184 0 1 47 12 13 77 19 14 384 1 4 5 0 3 90 2 1 320 6 8 221 0 2 645 1 2 288 1 0 124 0 27 186 5 0 84 0 2 156 1 0 109 5 6 52 4 8 106 0 18 30 1 2 79 7 8 29 0 19 396 1 0 4 4 5 27 0 9 262 0 4 381 1 0 569 0 3 482 0 1 174 4 5 85 chain 207952 chr8 145138636 + 57706915 57709537 L1PA8 5853 + 3236 5852 9422 754 4 0 3 4 0 447 0 5 93 0 1 464 1 0 6 0 2 237 0 1 272 2 0 43 1 0 45 2 0 46 5 7 17 1 0 6 6 5 45 10 9 8 0 1 6 2 1 92 chain 108101 chr8 145138636 + 57714162 57715403 L1PA5 6144 + 4897 6138 17308 796 9 9 436 chain 20440 chr8 145138636 + 57772645 57772907 L1PA8 5853 + 5249 5521 55841 199 8 18 55 chain 3779 chr8 145138636 + 57772907 57772949 L1PA8 5853 + 5522 5564 92992 42 chain 4126 chr8 145138636 + 57772951 57772996 L1PA8 5853 + 5565 5610 90610 45 chain 6362 chr8 145138636 + 57772998 57773076 L1PA8 5853 + 5610 5687 79802 72 1 0 5 chain 8059 chr8 145138636 + 57773123 57773232 L1PA8 5853 + 5745 5853 74729 15 1 0 93 chain 24803 chr8 145138636 + 57787253 57787607 THE1A 353 + 0 353 49584 26 0 1 76 8 7 99 11 10 10 0 1 4 2 1 118 chain 50827 chr8 145138636 + 57841143 57841799 LTR12_ 688 + 0 681 29268 53 0 41 44 24 8 535 chain 112302 chr8 145138636 + 57862415 57863894 THE1C-int 1605 + 45 1593 16778 400 0 7 162 0 50 7 0 1 7 1 8 320 5 6 138 44 46 84 0 1 311 chain 19728 chr8 145138636 + 57870456 57870685 L1PA8 5853 + 4376 4605 56753 229 chain 157226 chr8 145138636 + 57960533 57962313 L1PA5 6144 + 4364 6142 11929 1278 0 1 248 1 0 127 0 2 116 4 0 6 chain 26411 chr8 145138636 + 57978204 57978556 THE1A 353 + 0 349 47102 109 2 1 102 12 10 127 chain 35083 chr8 145138636 + 57983703 57984165 LTR2 463 + 0 459 37965 57 5 4 160 0 5 13 6 0 142 0 1 29 1 0 28 1 0 20 chain 16963 chr8 145138636 + 58089951 58090510 Tigger2a 444 + 0 258 59845 48 0 6 46 9 0 29 4 5 70 305 6 48 chain 21810 chr8 145138636 + 58198319 58198569 L1P2 5180 + 1597 1847 54089 250 chain 40995 chr8 145138636 + 58235032 58235522 HERV1_LTRc 486 + 0 480 33973 95 5 0 334 5 0 51 chain 9483 chr8 145138636 + 58269153 58269310 L1P4 1494 + 1171 1331 71511 86 13 11 32 1 6 25 chain 69159 chr8 145138636 + 58322780 58323531 L1PA3long 6157 + 5395 6147 24183 607 0 1 144 chain 266063 chr8 145138636 + 58332481 58336290 L1PA10 4194 + 223 4150 7797 9 2 0 9 1 0 6 7 6 18 6 4 11 1 0 6 96 80 8 1 0 14 7 0 9 3 2 79 2 0 615 10 11 329 3 2 15 15 10 71 1 0 156 0 119 19 0 3 165 11 10 56 0 6 39 1 2 11 8 16 70 7 1 14 13 6 72 0 1 272 87 100 58 13 13 22 0 1 171 21 45 522 0 1 457 2 0 152 3 0 33 chain 4003 chr8 145138636 + 58354553 58354599 Tigger2 2703 + 2577 2623 91439 46 chain 536448 chr8 145138636 + 58370159 58376173 L1PA3long 6157 + 0 6150 1538 152 12 13 616 0 128 17 0 1 697 0 1 894 0 2 382 1 0 1451 0 4 1644 0 6 6 6 0 136 chain 39641 chr8 145138636 + 58384553 58385010 L1PA4 6152 + 5690 6152 34932 288 1 6 168 chain 27569 chr8 145138636 + 58401289 58401585 AluYd8 298 + 0 296 45487 296 chain 37122 chr8 145138636 + 58453220 58453671 LTR2 463 + 0 463 36668 56 0 7 64 0 3 219 1 3 111 chain 44738 chr8 145138636 + 58460706 58461220 MER9a3 513 + 0 513 31730 233 2 1 279 chain 49404 chr8 145138636 + 58462137 58462995 LTR6B 557 + 0 557 29800 284 300 0 111 1 0 162 chain 99649 chr8 145138636 + 58468984 58470509 THE1C-int 1605 + 0 1596 18343 14 2 1 17 13 16 62 0 54 162 1 7 107 9 16 55 0 1 6 1 0 42 0 7 58 26 38 23 41 28 44 6 0 126 0 2 102 4 3 55 8 9 60 55 54 100 0 3 23 0 3 251 5 0 47 chain 116001 chr8 145138636 + 58483391 58484647 L1HS 6032 + 4782 6032 16235 1175 1 0 64 5 0 11 chain 23131 chr8 145138636 + 58503091 58503384 THE1B-int 1605 + 451 744 52172 293 chain 6007 chr8 145138636 + 58523950 58524024 MER53 195 + 0 74 81048 74 chain 73150 chr8 145138636 + 58530938 58531844 L1PA8 5853 + 4908 5847 23286 102 2 0 76 1 43 433 1 0 48 2 0 68 2 1 11 1 0 50 2 1 19 2 1 86 chain 101395 chr8 145138636 + 58617153 58618309 L1PA6 6164 + 4997 6154 18141 1122 0 1 34 chain 4426 chr8 145138636 + 58625439 58625487 MLT2D 439 + 391 439 88757 48 chain 77137 chr8 145138636 + 58627287 58628311 L1PB2 3958 + 2142 3145 22275 89 6 12 241 5 0 224 26 5 211 1 0 221 chain 55097 chr8 145138636 + 58644469 58645123 L1PA7 6471 + 5814 6470 27840 385 0 4 24 1 0 70 0 1 4 1 0 8 1 0 160 chain 25950 chr8 145138636 + 58656544 58656851 AluY 311 + 0 304 47794 56 5 1 75 0 1 171 chain 5823 chr8 145138636 + 58656954 58657023 MER53 195 + 115 184 81809 69 chain 11561 chr8 145138636 + 58661074 58661304 LTR47A 437 + 1 243 67640 119 53 79 24 14 0 20 chain 6102 chr8 145138636 + 58662959 58663034 MER67A 545 + 12 87 80719 75 chain 36721 chr8 145138636 + 58690857 58691318 LTR2 463 + 0 463 36946 299 1 2 61 12 13 88 chain 428853 chr8 145138636 + 58693297 58698410 Harlequin-int 5206 + 125 5206 4767 9 0 1 238 6 0 109 3 0 281 1 3 241 1 0 167 15 0 23 10 2 93 2 1 963 7 6 216 0 1 128 0 2 797 0 1 255 0 1 13 4 0 41 2 1 824 2 1 469 0 1 193 chain 37016 chr8 145138636 + 58698410 58698872 LTR2 463 + 0 463 36724 65 1 0 80 0 1 216 12 13 88 chain 247038 chr8 145138636 + 58726210 58729160 L1PA4 6152 + 209 4500 8302 132 12 14 125 3 4 659 0 2 373 0 1 88 0 1347 506 12 1 762 2 0 261 1 2 14 chain 10706 chr8 145138636 + 58776013 58776403 L1PA14 3548 + 2729 3105 32142 52 1 0 17 0 1 139 10 1 9 0 1 4 2 0 47 2 0 5 2 0 100 chain 56619 chr8 145138636 + 58776462 58777111 SVA_B 1603 + 899 1597 27380 51 0 40 401 2 11 195 chain 8593 chr8 145138636 + 58777302 58777615 L1PA14 3548 + 3141 3442 32142 76 5 4 110 1 0 11 21 17 20 4 2 11 2 0 4 1 0 22 1 0 24 chain 91016 chr8 145138636 + 58793348 58794786 L1PB3 3668 + 2191 3614 19500 243 0 1 164 15 16 23 11 12 28 0 2 5 1 0 5 1 0 9 11 26 34 0 1 19 0 1 140 0 1 66 2 0 16 5 0 72 14 11 133 21 15 57 1 0 22 8 17 58 4 3 83 50 33 17 7 5 37 23 18 11 7 4 15 chain 560083 chr8 145138636 + 58914690 58920717 L1PA2 6032 + 2 6029 171 6027 chain 7106 chr8 145138636 + 59198716 59198854 L1MC3 1789 + 1091 1236 77242 30 1 0 5 30 38 72 chain 33681 chr8 145138636 + 59347325 59347882 L1PREC2 3366 + 2476 3009 38943 271 0 10 49 1 0 44 1 0 4 42 34 17 5 0 15 10 8 23 37 20 38 chain 4637 chr8 145138636 + 59349444 59349497 L1PA16 3655 + 3301 3354 87616 53 chain 39105 chr8 145138636 + 59377368 59377816 L1PA5 6144 + 5696 6144 35283 448 chain 299150 chr8 145138636 + 59381209 59385335 L1P2 5180 + 408 4500 6856 5 1 0 35 39 20 36 0 1 5 23 16 36 86 10 98 0 59 8 21 0 46 0 15 52 5 8 82 15 34 70 0 1 4 1 0 271 0 2 349 3 18 144 11 0 178 0 1 42 17 12 261 9 6 175 11 13 265 0 4 312 0 4 20 0 4 552 44 25 536 1 0 257 chain 39162 chr8 145138636 + 59386623 59387095 L1PA7 6471 + 5985 6459 35242 310 1 3 161 chain 83412 chr8 145138636 + 59416609 59417815 L1PB2 3958 + 2621 3838 20931 95 0 2 156 0 2 40 9 8 198 0 1 89 1 6 89 2 0 54 1 0 13 25 0 55 11 13 10 5 1 92 1 0 28 0 36 8 1 0 64 2 1 71 2 0 12 12 12 36 0 1 24 chain 16295 chr8 145138636 + 59419366 59419634 L1PA14 3548 + 3230 3481 60628 102 14 9 38 4 2 12 1 0 3 1 0 18 1 0 41 6 0 10 1 0 16 chain 167756 chr8 145138636 + 59448654 59450718 L1PA7 6471 + 4399 6457 11229 117 1 0 615 2 0 7 0 2 147 0 1 333 4 0 86 1 0 565 5 36 10 31 0 134 1 0 5 chain 7464 chr8 145138636 + 59455884 59455970 5S 121 + 0 86 76213 86 chain 127128 chr8 145138636 + 59464265 59465695 L1PA4 6152 + 4071 5520 14405 484 8 0 665 0 25 54 2 0 5 0 4 212 chain 372155 chr8 145138636 + 59534832 59538984 L1PA3long 6157 + 1998 6157 5617 699 2 0 491 1 2 505 1 0 744 3 0 52 0 4 106 0 1 957 0 10 578 3 0 10 chain 105633 chr8 145138636 + 59542114 59543303 L1PA4 6152 + 4536 5740 17606 767 3 7 65 1 2 176 0 10 177 chain 98639 chr8 145138636 + 59565729 59567326 L1PB1 5432 + 3998 5420 18459 221 1 2 105 3 1 218 0 1 4 1 0 31 0 5 43 3 0 5 1 5 85 7 13 366 157 2 9 1 0 20 1 0 12 1 0 11 5 1 11 2 0 50 1 0 18 6 5 35 43 31 19 26 21 22 1 0 21 1 0 13 1 0 16 chain 80941 chr8 145138636 + 59665403 59666360 LTR13A 966 + 0 966 21446 73 0 4 585 4 0 68 1 2 144 1 9 81 chain 3550 chr8 145138636 + 59702058 59702099 Charlie7 753 + 150 191 94849 41 chain 124546 chr8 145138636 + 59705714 59707175 L1PA5 6144 + 4658 6144 14775 464 0 1 156 0 19 232 0 3 158 6 6 381 4 6 60 chain 7384 chr8 145138636 + 59733729 59733901 L1MC2 1988 + 1502 1681 76438 19 0 7 58 58 59 26 1 0 10 chain 41320 chr8 145138636 + 59734019 59734522 L1PA7 6471 + 5963 6467 33777 168 0 1 335 chain 170415 chr8 145138636 + 59750385 59752314 L1PA5 6144 + 4208 6144 11089 136 0 4 279 0 1 842 0 2 205 0 1 358 1 0 108 chain 241913 chr8 145138636 + 59816706 59819675 L1PA7 6471 + 3497 6460 8428 109 0 1 223 14 12 765 0 2 264 0 8 65 4 3 70 28 11 466 1 2 123 1 0 81 0 2 434 0 1 321 chain 54803 chr8 145138636 + 59826005 59826823 MER4E 760 + 0 760 27947 23 0 1 127 31 34 28 0 1 134 54 0 36 0 2 145 29 17 204 0 1 7 chain 554442 chr8 145138636 + 59881856 59888008 L1PA3long 6157 + 5 6157 449 1232 0 1 2451 1 0 2468 chain 20371 chr8 145138636 + 59892176 59892417 L1PA5 6144 + 5895 6137 55926 134 3 4 104 chain 100411 chr8 145138636 + 59952850 59953954 L1PA4 6152 + 5047 6151 18247 1104 chain 49788 chr8 145138636 + 59955098 59955662 L1PA3long 6157 + 5589 6153 29643 564 chain 32866 chr8 145138636 + 59955671 59956052 L1PA6 6164 + 5782 6162 39617 371 1 0 9 chain 2897 chr8 145138636 + 60000305 60000520 LTR12C 1709 + 931 1068 100863 30 168 90 17 chain 3335 chr8 145138636 + 60000531 60000571 LTR12C 1709 + 837 877 96728 40 chain 96158 chr8 145138636 + 60004170 60005298 L1PA6 6164 + 5007 6142 18758 234 0 1 73 0 6 821 chain 29456 chr8 145138636 + 60024538 60024956 L1PA8 5853 + 5442 5853 42661 122 2 1 43 2 0 62 22 20 50 2 1 19 1 0 93 chain 34542 chr8 145138636 + 60037135 60037666 L1MA2 4263 + 3581 4115 38325 4 0 1 51 17 27 75 5 6 4 1 0 48 7 9 152 9 7 93 7 0 47 1 0 10 chain 3759 chr8 145138636 + 60074270 60074316 MLT2B2 565 + 519 565 93139 46 chain 278600 chr8 145138636 + 60155833 60159761 L1PBa1 4058 + 124 4028 7467 221 4 3 38 40 47 80 2 24 79 16 15 35 6 6 73 0 8 104 4 10 174 6 0 33 24 16 11 3 1 11 9 0 63 0 2 133 6 5 130 6 5 10 0 1 202 0 3 36 0 1 72 1 6 173 1 2 23 7 1 44 13 16 86 0 1 94 1 0 74 0 4 167 14 9 204 0 1 116 0 1 173 33 1 113 0 8 11 7 6 18 4 7 213 1 0 87 1 0 112 9 2 50 3 7 59 1 0 7 2 1 28 2 1 44 3 1 103 3 1 22 1 0 7 6 0 14 2 0 20 2 1 4 1 0 25 1 0 9 2 1 27 1 0 17 1 0 30 chain 553819 chr8 145138636 + 60160370 60166517 L1PA3long 6157 + 6 6157 494 3569 0 1 781 0 4 25 0 1 796 1 0 715 1 0 259 chain 131775 chr8 145138636 + 60166534 60168391 L1PB1 5432 + 3598 5424 13846 129 2 0 235 2 1 235 0 1 34 0 1 198 1 7 343 0 1 263 0 1 5 1 0 51 3 0 14 3 0 17 1 0 13 17 12 10 2 1 50 2 1 15 1 0 42 114 95 18 1 0 13 1 0 16 1 0 4 chain 6098 chr8 145138636 + 60180936 60181017 L1PA11 4918 + 4431 4508 80738 35 1 0 6 2 0 16 1 0 20 chain 7890 chr8 145138636 + 60215393 60215547 L1PB1 5432 + 5284 5417 75149 12 3 0 6 16 6 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 13 chain 4056 chr8 145138636 + 60243602 60243644 5S 121 + 0 42 91034 42 chain 83517 chr8 145138636 + 60294238 60295204 LTR13A 966 + 0 966 20910 128 0 1 637 1 0 200 chain 8929 chr8 145138636 + 60339160 60339301 MSTD 398 + 256 398 72719 83 23 24 35 chain 68588 chr8 145138636 + 60342485 60343637 L1PA14 3548 + 2358 3465 24313 142 1 4 32 1 0 24 0 3 126 62 0 25 0 41 40 1 0 33 0 3 100 10 8 14 9 7 41 8 4 88 0 12 9 16 0 17 2 0 6 1 0 83 2 1 90 0 1 12 8 7 11 5 1 36 4 2 12 1 0 5 9 8 9 1 0 40 6 0 10 chain 13127 chr8 145138636 + 60395171 60395372 MER47A 366 + 71 274 64884 56 6 7 36 0 1 60 12 12 31 chain 498324 chr8 145138636 + 60447770 60453846 L1PA7 6471 + 3 6458 3190 232 0 5 86 0 1 85 14 7 494 4 8 216 2 1 72 0 4 29 16 16 12 7 8 130 0 1 536 0 2 539 2 1 604 0 1 259 3 2 5 0 1 189 0 4 17 0 1 362 0 4 45 0 351 126 0 9 10 0 1 54 1 0 779 0 1 308 1 0 837 chain 44746 chr8 145138636 + 60493461 60494073 LTR14B 630 + 9 630 31725 152 1 0 97 3 17 19 0 25 71 0 9 37 38 0 194 chain 72990 chr8 145138636 + 60494275 60495269 HERVK14-int 1672 + 1 990 23316 29 1 0 10 1 0 50 1 0 163 12 11 36 6 5 23 18 16 215 6 11 39 5 4 206 1 0 163 1 0 8 chain 34805 chr8 145138636 + 60499325 60499880 LTR14B 630 + 17 578 38157 135 10 9 101 0 11 19 0 25 23 23 23 28 0 9 13 55 17 148 chain 4875 chr8 145138636 + 60560775 60560857 MER30 238 + 156 238 86285 33 3 0 7 7 10 32 chain 6946 chr8 145138636 + 60581147 60581312 Tigger4a 237 + 7 215 77793 22 1 25 13 27 37 6 3 0 8 6 0 53 1 19 25 chain 29037 chr8 145138636 + 60596118 60596453 L1PA7 6471 + 5280 5614 43268 289 1 0 45 chain 15010 chr8 145138636 + 60596453 60596640 L1PA7 6471 + 5617 5808 62256 90 9 13 88 chain 25273 chr8 145138636 + 60603943 60604337 MSTA 426 + 1 402 48831 93 58 66 85 1 0 157 chain 2902 chr8 145138636 + 60755977 60756011 MER3 215 - 7 41 100823 34 chain 115426 chr8 145138636 + 60760246 60761502 L1PA3long 6157 + 4899 6157 16324 597 0 3 80 1 0 578 chain 48074 chr8 145138636 + 60884356 60884874 L1PA3long 6157 + 5628 6146 30267 518 chain 45959 chr8 145138636 + 60931104 60931700 L1PREC2 3366 + 1579 2188 31073 246 4 14 237 1 4 108 chain 44499 chr8 145138636 + 60935095 60935716 MER41B 635 + 0 620 31827 65 0 1 50 12 13 37 0 1 4 4 3 277 18 17 44 2 0 108 chain 128092 chr8 145138636 + 60994769 60996172 L1PA2 6032 + 4624 6029 14268 358 0 2 1045 chain 76767 chr8 145138636 + 61047097 61047952 L1PA3long 6157 + 5287 6157 22382 382 0 15 473 chain 20921 chr8 145138636 + 61142086 61142445 THE1D 372 + 0 372 55234 52 24 26 66 71 82 146 chain 15866 chr8 145138636 + 61165653 61165845 MER4E1 777 + 585 769 61206 40 8 0 144 chain 43600 chr8 145138636 + 61167577 61168129 MER41A 554 + 0 554 32382 131 8 7 289 0 1 91 0 2 33 chain 395359 chr8 145138636 + 61177214 61183322 L1PA8 5853 + 105 5853 5231 22 23 8 18 124 126 13 199 184 47 60 41 11 8 9 37 45 42 39 38 40 14 9 9 116 40 39 219 0 1 462 4 6 78 6 5 326 0 1 119 0 4 540 0 2 18 0 1 508 4 5 359 0 1 295 1 2 36 0 4 228 5 4 4 0 1 8 0 3 350 0 1 37 316 0 68 35 1 393 2 0 43 0 1 28 0 2 132 1 33 224 0 1 90 1 0 43 3 1 71 1 0 8 12 7 7 6 0 39 2 1 19 1 0 93 chain 391920 chr8 145138636 + 61189022 61193528 L1PA5 6144 + 1632 6143 5293 6 4 0 494 0 1 1549 1 0 290 0 1 320 2 1 586 0 1 161 0 1 52 1 2 45 0 5 837 5 7 6 1 0 146 chain 78909 chr8 145138636 + 61213426 61214477 MER11C 1089 + 0 1063 21895 246 0 9 58 0 4 69 1 0 146 72 67 70 0 1 20 0 4 5 1 0 38 0 1 127 0 1 54 1 0 143 chain 57056 chr8 145138636 + 61217591 61218550 L1MA5A 2387 + 1333 2254 27251 51 15 12 35 1 0 124 10 14 67 20 19 101 22 24 175 24 23 55 11 10 26 1 0 86 2 0 30 1 0 33 3 0 14 30 0 22 chain 15557 chr8 145138636 + 61224688 61224873 L1P3 4156 + 2643 2828 61578 185 chain 4535 chr8 145138636 + 61244745 61244806 L1MC2 1988 + 1929 1988 88139 20 1 0 34 1 0 5 chain 19225 chr8 145138636 + 61324507 61324742 THE1A-int 1579 + 0 237 57319 15 0 2 220 chain 21710 chr8 145138636 + 61348249 61348486 L1PA5 6144 + 5902 6139 54217 237 chain 405214 chr8 145138636 + 61481244 61486095 L1PA5 6144 + 0 6132 5090 125 0 14 15 12 24 340 1 5 6 4 0 636 13 4 325 0 1266 852 7 1 299 3 4 14 1 2 42 0 1 9 0 3 1096 4 4 629 17 17 216 8 6 177 chain 10758 chr8 145138636 + 61505517 61505645 THE1A 353 + 225 353 68940 128 chain 10163 chr8 145138636 + 61506097 61506373 L1MB3 1562 + 1213 1461 70078 35 1 0 94 129 102 17 chain 174396 chr8 145138636 + 61572804 61574843 L1PA7 6471 + 4401 6458 10877 173 1 0 4 0 1 376 1 0 35 1 2 37 1 0 273 0 15 304 1 0 77 1 3 607 0 3 147 chain 21113 chr8 145138636 + 61577071 61577340 L1PA5 6144 + 5879 6141 54995 193 7 0 69 chain 22745 chr8 145138636 + 61599214 61599483 L1PA5 6144 + 5878 6144 52764 261 3 0 5 chain 26375 chr8 145138636 + 61703948 61704223 AluYa5 310 + 35 310 47157 275 chain 10765 chr8 145138636 + 61778570 61778695 L1PA5 6144 + 6019 6144 68929 125 chain 166150 chr8 145138636 + 61992004 61994101 L1PA7 6471 + 3838 5934 11329 170 0 1 227 0 1 32 1 0 449 0 2 98 0 4 52 1 10 100 0 1 112 22 0 21 37 38 149 0 2 261 0 1 52 1 0 88 0 1 224 chain 506883 chr8 145138636 + 61994309 62000000 L1PA3long 6157 + 6 5833 2899 110 0 1 34 10 10 615 0 128 349 0 1 1443 1 0 232 0 3 334 0 4 2563 chain 29437 chr8 145138636 + 62000000 62000327 L1PA2 6032 + 5705 6032 42687 327 chain 115057 chr8 145138636 + 62022035 62023423 L1PA7 6471 + 5067 6461 16381 101 2 0 166 1 0 283 1 0 92 0 1 2 0 3 36 0 5 390 1 2 313 chain 23639 chr8 145138636 + 62065586 62065874 L1PA5 6144 + 5856 6144 51368 4 1 0 92 3 4 188 chain 32046 chr8 145138636 + 62068083 62068488 THE1C-int 1605 + 15 425 40314 312 0 6 19 1 0 73 chain 73881 chr8 145138636 + 62079113 62079924 L1PA3long 6157 + 5338 6149 23124 811 chain 502744 chr8 145138636 + 62223130 62229596 L1PA7 6471 + 0 6467 3036 65 6 9 331 1 2 66 0 1 61 0 1 107 5 6 682 9 10 19 3 4 798 1 0 32 3 0 286 0 27 26 4 5 43 1 7 10 35 9 31 9 0 63 1 0 416 25 14 767 9 11 437 1 2 168 0 1 898 0 2 204 3 0 79 0 2 244 17 24 491 3 0 6 chain 108256 chr8 145138636 + 62297133 62298332 L1PA3long 6157 + 4957 6157 17284 1056 1 2 142 chain 111216 chr8 145138636 + 62402786 62404354 THE1C-int 1605 + 0 1605 16912 13 6 5 199 0 2 106 3 9 111 0 7 11 4 5 214 60 70 177 0 1 250 0 1 124 5 10 161 10 16 6 6 0 20 2 0 5 10 17 65 chain 25498 chr8 145138636 + 62659703 62660056 THE1B 368 + 0 368 48484 44 5 20 104 1 0 112 7 8 80 chain 19192 chr8 145138636 + 62667082 62667302 L1PA5 6144 + 5918 6138 57359 220 chain 6465 chr8 145138636 + 62669402 62669482 MER4D 903 + 792 872 79463 80 chain 32630 chr8 145138636 + 62738865 62739277 L1PA7 6471 + 6060 6469 39832 187 3 4 62 5 6 140 5 0 10 chain 74245 chr8 145138636 + 62789585 62790421 L1PA4 6152 + 3261 4098 23018 679 0 1 157 chain 56879 chr8 145138636 + 62799238 62800189 L1PB1 5432 + 4511 5422 27306 117 3 0 350 0 1 5 1 0 50 5 6 39 4 0 13 16 13 8 1 0 25 1 0 4 3 2 12 18 12 52 2 1 15 1 0 27 1 2 16 1 0 15 2 0 6 16 6 16 27 22 24 1 0 22 1 0 12 8 7 11 chain 550968 chr8 145138636 + 62800633 62806814 L1PA3long 6157 + 6 6157 678 1842 1 6 522 0 1 794 0 1 264 0 1 251 37 0 1690 1 0 779 chain 123766 chr8 145138636 + 62814375 62815773 L1P1 4361 + 2625 4036 14886 539 0 1 80 0 12 75 1 0 600 0 1 103 chain 3264 chr8 145138636 + 62843223 62843261 MLT1D 503 + 307 345 97337 38 chain 332999 chr8 145138636 + 62872724 62876920 L1PA8A 6298 + 2032 6291 6167 139 0 3 169 0 22 67 8 10 65 6 9 431 1 2 4 1 0 16 0 4 432 2 1 41 0 3 39 5 6 89 0 1 163 10 25 98 0 1 576 8 0 377 2 0 27 7 10 228 3 0 199 3 4 191 0 3 85 0 1 25 0 10 552 1 3 27 0 1 5 3 4 91 chain 42490 chr8 145138636 + 62891041 62891585 MLT2A2 560 + 0 560 33069 15 0 4 387 0 11 71 1 2 70 chain 14190 chr8 145138636 + 62943872 62944147 L1PB1 5432 + 5168 5422 63334 52 2 1 16 2 1 39 4 3 16 2 0 14 8 0 16 9 6 14 2 0 24 1 0 21 2 1 12 2 1 17 chain 4704 chr8 145138636 + 63008238 63008320 MER74A 558 + 475 556 87244 53 16 15 13 chain 6571 chr8 145138636 + 63045398 63045478 HSMAR1 1287 + 1207 1287 79073 80 chain 11900 chr8 145138636 + 63048647 63048817 L1PA13 3608 + 1923 2093 67007 101 11 11 58 chain 20705 chr8 145138636 + 63049104 63050021 Tigger1 2417 + 1408 1806 55493 62 636 117 219 chain 90717 chr8 145138636 + 63051612 63052716 MER11A 1151 + 0 1151 19550 230 1 0 64 0 11 21 0 2 257 0 4 216 2 1 56 0 32 100 0 1 90 1 0 66 chain 519767 chr8 145138636 + 63077190 63083643 L1PA6 6164 + 0 6162 2285 235 0 1 223 8 8 102 1 0 987 0 1 273 1 0 109 0 6 287 12 20 209 0 6 722 2 3 68 319 0 29 17 11 37 0 1 192 23 27 642 0 1 1113 0 6 573 0 1 269 chain 62445 chr8 145138636 + 63091290 63092056 L1PA8A 6298 + 5175 5939 25764 314 4 1 66 1 2 381 chain 17794 chr8 145138636 + 63096533 63096771 MER61-int 3695 + 1436 1667 58901 106 3 0 33 4 0 92 chain 52939 chr8 145138636 + 63098157 63098937 MER61-int 3695 + 1091 1869 28596 21 7 8 83 0 4 137 2 1 73 20 18 4 1 0 213 14 15 130 1 9 37 20 8 17 chain 5169 chr8 145138636 + 63106094 63106155 U3 216 + 8 69 84821 61 chain 112012 chr8 145138636 + 63125927 63127281 LTR12C 1709 + 0 1709 16813 332 0 36 202 10 9 220 3 319 99 7 11 481 chain 36289 chr8 145138636 + 63136948 63137383 L1PA6 6164 + 5724 6159 37218 435 chain 126360 chr8 145138636 + 63161808 63163313 LTR12C 1709 + 2 1709 14500 102 5 4 201 0 1 4 1 0 439 0 2 55 0 200 101 1 0 5 3 1 107 0 4 481 chain 39087 chr8 145138636 + 63164908 63165382 LTR10F 562 + 0 562 35297 144 0 87 172 0 1 158 chain 31059 chr8 145138636 + 63165927 63166302 THE1A-int 1579 + 1183 1573 41084 101 0 14 247 5 6 22 chain 23677 chr8 145138636 + 63166307 63166664 THE1A 353 + 0 353 51311 44 0 1 62 7 6 28 1 0 29 0 1 8 3 2 31 3 2 63 17 15 61 chain 28826 chr8 145138636 + 63227487 63227788 AluYg6 310 + 0 301 43589 301 chain 7090 chr8 145138636 + 63252956 63253043 THE1D-int 1627 + 1304 1391 77296 87 chain 4613 chr8 145138636 + 63282827 63282884 HSMAR2 1300 + 1232 1288 87734 44 1 0 12 chain 25115 chr8 145138636 + 63284359 63284717 MER1A 529 + 46 449 49095 34 23 63 156 9 14 136 chain 364139 chr8 145138636 + 63318750 63328350 HERVL-int 5654 + 1164 5654 5748 483 359 0 8 0 2 112 0 1 200 95 0 266 3 0 1808 4672 0 102 5 6 558 0 6 208 2 0 30 0 3 57 1 2 287 0 1 287 0 6 57 chain 177707 chr8 145138636 + 63323788 63326192 HUERS-P2-int 2744 + 347 2734 10695 113 1 2 4 1 0 30 7 6 956 21 20 11 13 13 754 6 7 114 1 0 12 4 9 42 1 0 72 2 0 32 5 0 11 1 3 21 2 1 11 1 0 8 22 19 38 8 5 28 21 17 9 2 0 19 chain 28110 chr8 145138636 + 63365474 63366806 LTR8 732 + 0 703 44696 27 2 0 35 3 10 43 5 6 206 11 17 35 166 168 20 724 81 55 chain 160677 chr8 145138636 + 63424942 63426874 L1PA7 6471 + 4496 6468 11705 1050 7 51 12 6 5 681 0 1 165 4 0 7 chain 12866 chr8 145138636 + 63430498 63430800 L1PB1 5432 + 5117 5392 65316 18 1 0 7 3 2 12 18 12 52 2 1 15 1 0 44 1 0 16 54 40 10 2 0 24 1 0 6 0 1 15 chain 8328 chr8 145138636 + 63495189 63495332 MER21A 919 + 11 170 74087 60 3 0 10 8 9 18 5 24 24 1 0 14 chain 36189 chr8 145138636 + 63511256 63511727 LTR7B 505 + 0 496 37281 39 0 1 169 0 1 21 0 21 62 7 5 122 11 14 19 0 1 21 chain 29498 chr8 145138636 + 63512732 63513046 AluYb8 318 + 0 316 42613 70 0 2 244 chain 97219 chr8 145138636 + 63534192 63535326 L1PA6 6164 + 5026 6162 18633 291 0 3 672 12 11 159 chain 15222 chr8 145138636 + 63665395 63665731 L1PB1 5432 + 5114 5422 62014 24 8 6 12 10 6 6 2 0 52 2 1 16 1 0 42 2 1 16 3 0 6 1 0 10 8 0 15 8 5 14 2 0 24 1 0 22 12 14 12 1 0 4 chain 26260 chr8 145138636 + 63728663 63729079 MLT2A1 477 + 0 409 47338 142 11 12 10 5 9 22 15 16 113 2 1 72 12 0 12 chain 7731 chr8 145138636 + 63743204 63743356 L1PA8A 6298 + 6127 6279 75529 40 16 8 9 1 8 49 16 17 21 chain 17018 chr8 145138636 + 63805215 63805402 L1P1 4361 + 2205 2392 59788 187 chain 3694 chr8 145138636 + 63843943 63843991 MER33 330 + 161 209 93648 48 chain 3279 chr8 145138636 + 63876324 63876367 MLT1H1 527 + 471 515 97201 14 0 1 29 chain 23915 chr8 145138636 + 63888200 63888548 LTR7 482 + 0 419 50922 69 8 46 109 11 43 22 5 6 124 chain 28106 chr8 145138636 + 63920509 63920891 MLT2A1 477 + 0 383 44708 169 5 2 70 1 3 20 1 2 88 0 1 28 chain 399200 chr8 145138636 + 63921204 63926344 HERVL-int 5654 + 0 5158 5167 230 2 1 406 13 12 209 8 13 34 0 2 211 2 0 174 1 0 4 5 6 498 1 2 227 0 16 45 1 2 1136 81 81 29 1 2 166 0 4 618 12 0 7 5 17 946 8 0 60 chain 3887 chr8 145138636 + 63998446 63998494 HSMAR2 1300 + 1251 1299 92236 48 chain 17721 chr8 145138636 + 64083075 64083286 AluSc5 308 + 57 270 58987 155 0 2 56 chain 511116 chr8 145138636 + 64083678 64089807 L1PA6 6164 + 0 6162 2707 199 0 1 309 2 1 43 1 2 14 4 0 370 0 25 163 7 8 587 0 1 105 0 1 229 2 1 261 5 6 784 0 2 896 7 8 346 0 4 48 0 1 900 1 0 509 8 17 173 5 4 138 7 0 6 chain 480700 chr8 145138636 + 64102228 64107732 L1PA4 6152 + 0 5516 3613 580 1 0 275 18 1 174 0 1 125 0 3 24 1 4 189 0 2 329 0 1 277 0 15 320 2 1 570 0 1 931 0 4 1221 0 1 467 chain 21070 chr8 145138636 + 64114459 64114693 L1PA3long 6157 + 5920 6157 55039 95 0 3 139 chain 26252 chr8 145138636 + 64159921 64160420 MER34C_ 573 + 47 562 47349 90 0 5 89 16 19 42 0 1 33 51 52 14 13 13 24 16 24 66 3 0 23 7 8 12 chain 19058 chr8 145138636 + 64166659 64166898 L1PA5 6144 + 5902 6139 57487 189 2 0 48 chain 67479 chr8 145138636 + 64235833 64236585 L1PA5 6144 + 5114 5872 24584 114 0 5 285 0 1 353 chain 539762 chr8 145138636 + 64240097 64246116 L1PA3long 6157 + 2 6152 1354 150 0 1 562 1 0 62 1 129 151 1 2 2040 0 2 3051 chain 27229 chr8 145138636 + 64254298 64254584 AluYd8 298 + 0 286 45930 286 chain 12388 chr8 145138636 + 64262083 64262219 L1PA5 6144 + 6002 6138 66157 136 chain 2284 chr8 145138636 + 64358903 64358997 MADE1 96 + 0 96 104801 24 23 25 47 chain 77872 chr8 145138636 + 64436689 64437552 L1PA3long 6157 + 4703 5566 22125 863 chain 17675 chr8 145138636 + 64485361 64485648 MER2 342 + 7 329 59039 49 31 29 30 0 1 18 7 43 152 chain 188877 chr8 145138636 + 64491424 64493724 L1PA7 6471 + 4048 6360 10171 269 5 7 494 0 4 531 2 5 49 1 0 214 0 3 260 0 1 246 1 2 164 23 22 41 chain 6093 chr8 145138636 + 64541874 64541949 MER21A 919 + 27 102 80762 75 chain 55130 chr8 145138636 + 64560013 64560613 L1PA3long 6157 + 5557 6157 27832 600 chain 112333 chr8 145138636 + 64565365 64566839 L1PA8 5853 + 4382 5853 16775 413 1 0 215 2 0 18 3 2 27 0 1 24 0 2 275 1 2 112 0 1 88 1 0 46 2 0 59 93 88 5 0 2 9 1 0 5 0 3 74 chain 83769 chr8 145138636 + 64645510 64646440 L1PA3long 6157 + 4458 5387 20853 424 2 1 504 chain 184942 chr8 145138636 + 64652286 64655244 L1PA14 3548 + 886 3465 10338 71 1 0 194 331 0 13 0 7 718 0 1 297 0 11 26 0 1 5 0 1 9 67 33 166 0 1 4 2 1 90 2 1 153 4 3 246 3 1 14 2 0 47 9 5 106 13 9 11 2 0 6 1 0 84 1 0 25 1 2 84 1 0 10 16 12 25 4 2 12 1 0 5 14 12 4 1 0 41 6 0 10 chain 136266 chr8 145138636 + 64685228 64687147 SVA_F 1814 + 335 1813 13414 553 1 0 10 1 0 2 403 0 47 0 15 239 51 0 612 chain 3034 chr8 145138636 + 64685838 64685874 SVA_F 1814 + 894 930 39993 36 chain 22030 chr8 145138636 + 64685874 64686198 SVA_F 1814 + 881 1091 37603 67 129 15 128 chain 10703 chr8 145138636 + 64685941 64686068 SVA_F 1814 + 1012 1138 39993 109 1 0 17 chain 3207 chr8 145138636 + 64686484 64686520 SVA_F 1814 + 1152 1187 80550 18 1 0 17 chain 3035 chr8 145138636 + 64731262 64731299 THE1C-int 1605 + 110 147 99464 37 chain 36751 chr8 145138636 + 64762955 64763411 LTR17 781 + 255 754 36923 72 1 0 358 8 52 17 chain 184700 chr8 145138636 + 64765488 64767717 HERV17-int 4347 + 12 4347 10355 15 1 0 52 1 0 34 2 0 26 2 0 72 11 11 105 0 430 16 0 4 570 0 1 120 5 0 592 0 1672 201 9 14 154 0 2 51 0 1 46 0 2 144 chain 23986 chr8 145138636 + 64768042 64768361 LTR17 781 + 9 326 50813 47 1 0 122 4 3 145 chain 34862 chr8 145138636 + 64873832 64874324 L1PA8 5853 + 5363 5853 38118 158 0 3 19 0 7 14 1 0 46 2 0 49 4 0 16 16 13 52 2 1 19 3 2 91 chain 179120 chr8 145138636 + 64911727 64913737 L1PA4 6152 + 4134 6143 10628 1160 1 0 849 chain 30368 chr8 145138636 + 64939128 64939456 L1PA3long 6157 + 5827 6155 41701 328 chain 507031 chr8 145138636 + 64955582 64961298 L1PA4 6152 + 7 5737 2889 413 0 11 226 0 1 2507 1 0 105 0 1 2399 0 1 7 0 1 58 chain 11176 chr8 145138636 + 64980852 64981033 L1MA6 2487 + 2098 2262 68293 121 1 0 8 26 10 25 chain 60557 chr8 145138636 + 65005612 65006299 L1PA4 6152 + 5465 6143 26211 550 9 0 128 chain 54242 chr8 145138636 + 65098502 65099127 L1PA7 6471 + 5772 6397 28136 187 0 1 342 1 0 95 chain 552883 chr8 145138636 + 65120644 65126660 L1PA2 6032 + 6 6032 551 204 0 1 1636 1 9 1282 0 1 2893 chain 375694 chr8 145138636 + 65134273 65139184 L1PB1 5432 + 114 5049 5560 23 0 1 142 0 1 35 0 12 77 2 1 7 0 1 42 0 1 86 3 4 54 2 1 5 0 1 9 0 1 143 0 1 119 1 2 4 1 0 508 1 0 7 20 16 174 0 2 10 1 0 270 0 1 160 0 1 151 0 5 183 5 9 110 6 0 154 1 2 192 2 0 94 27 20 70 2 3 36 1 0 74 0 1 520 1 0 54 7 18 294 1 0 500 0 4 86 9 5 191 1 4 193 2 0 5 0 2 33 chain 9814 chr8 145138636 + 65202879 65203032 L1PA16 3655 + 2528 2681 70796 65 6 14 8 7 0 59 1 0 7 chain 13219 chr8 145138636 + 65204376 65204576 L1MA8 2339 + 1549 1737 64746 57 7 0 28 14 9 94 chain 3566 chr8 145138636 + 65209946 65209989 MLT1J1 437 + 45 87 94697 5 1 0 37 chain 41822 chr8 145138636 + 65214821 65215371 L1PA8 5853 + 5308 5853 33469 86 8 10 158 1 0 48 2 0 68 12 10 52 2 1 19 1 0 93 chain 82329 chr8 145138636 + 65244710 65245773 HSMAR1 1287 + 8 1285 21169 151 1 6 143 1 7 79 8 9 386 5 0 55 0 207 234 chain 3456 chr8 145138636 + 65261914 65261972 LTR33B 472 + 62 134 95591 21 8 22 29 chain 4394 chr8 145138636 + 65298661 65298733 MLT1A0 366 + 256 330 88919 45 10 12 17 chain 13565 chr8 145138636 + 65342232 65342417 L1PA7 6471 + 4799 4985 64225 155 4 5 26 chain 534653 chr8 145138636 + 65379644 65386163 L1PA7 6471 + 6 6465 1637 400 1 2 183 33 25 1143 1 0 332 0 1 135 0 1 292 0 4 1025 0 4 78 0 1 96 0 1 107 3 0 380 0 1 614 71 0 441 10 12 65 3 0 94 0 1 179 0 7 68 0 2 194 0 3 562 3 0 6 chain 37948 chr8 145138636 + 65391645 65392045 L1HS 6032 + 5616 6016 36111 400 chain 527387 chr8 145138636 + 65426356 65439448 L1PA4 6152 + 1 6143 1938 1041 1 0 46 0 1 154 0 1 1067 0 1 579 0 1 279 2 3 242 1 3 360 6957 0 708 0 1 146 0 1 1263 2 1 244 chain 16874 chr8 145138636 + 65430848 65431036 L1PA2 6032 + 5838 6026 59939 188 chain 69473 chr8 145138636 + 65431955 65432727 L1PA4 6152 + 5386 6152 24126 61 6 0 705 chain 67119 chr8 145138636 + 65436282 65437016 L1PA4 6152 + 2976 3710 24677 734 chain 43181 chr8 145138636 + 65467041 65467524 L1PA5 6144 + 5658 6141 32663 483 chain 64340 chr8 145138636 + 65569712 65570424 L1PA4 6152 + 5417 6138 25340 689 0 9 23 chain 19011 chr8 145138636 + 65579828 65580055 L1PA7 6471 + 6229 6459 57540 38 0 2 182 0 1 7 chain 7079 chr8 145138636 + 65580081 65580194 L1PB4 2604 + 1101 1215 77333 19 13 14 81 chain 6265 chr8 145138636 + 65592728 65592808 HY3 101 + 3 90 80107 27 0 7 53 chain 11164 chr8 145138636 + 65602231 65602416 L1PA8 5853 + 5661 5853 68318 18 1 0 4 6 5 12 0 1 39 2 1 19 1 0 45 9 19 29 chain 122548 chr8 145138636 + 65616162 65617627 SVA_F 1814 + 12 1814 15105 137 11 0 328 0 40 369 3 296 178 1 2 67 1 3 356 0 12 14 chain 126528 chr8 145138636 + 65662060 65663547 SVA_D 2077 + 0 2077 14477 11 9 2 16 3 7 499 0 196 159 0 396 16 12 13 30 0 2 41 0 1 4 6 5 661 2 0 18 chain 11963 chr8 145138636 + 65673418 65673603 L1PA8 5853 + 5680 5853 66897 9 1 0 37 25 15 19 1 0 93 chain 29572 chr8 145138636 + 65765208 65765517 AluYa5 310 + 1 310 42517 309 chain 20396 chr8 145138636 + 65768278 65768624 THE1B 368 + 0 368 55888 108 6 18 46 1 0 26 0 3 5 42 49 68 8 9 36 chain 83746 chr8 145138636 + 65809533 65810503 L1PA6 6164 + 5185 6161 20862 132 0 3 103 0 3 735 chain 44120 chr8 145138636 + 65858114 65858619 L1PA5 6144 + 5642 6142 32069 167 1 0 326 4 0 7 chain 192173 chr8 145138636 + 65863896 65867166 HERVH48-int 3304 + 100 3152 10017 10 2 0 6 7 3 8 2 0 7 6 2 7 2 0 10 46 38 8 2 0 57 13 0 12 2 1 8 1 0 9 4 10 65 4 0 7 1 0 73 1 0 15 3 0 8 13 7 81 1 0 7 2 3 39 15 0 25 14 5 15 4 0 17 1 0 4 3 1 67 4 6 26 9 8 31 3 2 68 25 17 118 3 0 11 1 0 20 1 0 14 2 0 29 11 6 22 2 0 4 1 0 16 1 0 20 2 0 22 1 0 23 3 0 8 10 4 47 0 1 74 1 0 12 1 0 8 1 0 14 5 1 203 1 0 89 1 0 273 1 0 16 2 1 127 0 1 117 1 0 18 2 0 70 2 1 10 2 1 47 1 0 229 27 24 42 1 0 6 1 0 9 3 1 30 2 0 17 2 0 7 195 150 25 13 5 9 1 0 5 1 0 18 2 0 5 1 0 24 26 24 34 1 0 32 67 51 64 chain 37432 chr8 145138636 + 65873848 65874359 MER41A 554 + 22 554 36457 162 13 14 40 0 1 222 22 41 52 chain 371979 chr8 145138636 + 65890728 65895984 L1PB1 5432 + 77 5313 5621 133 104 105 186 7 8 29 1 0 4 22 30 6 0 1 91 4 9 8 0 1 74 54 53 332 0 1 239 9 13 181 0 1 21 0 1 434 0 1 455 2 0 83 0 5 236 14 9 5 0 2 170 3 4 6 1 0 295 0 1 426 3 0 76 8 9 4 0 1 242 7 12 184 0 1 107 0 1 67 9 7 4 0 1 51 12 8 116 2 0 178 0 2 121 7 10 49 0 1 22 9 0 91 1 4 9 29 0 24 1 0 6 1 0 13 6 2 9 2 0 69 1 0 45 1 0 14 3 0 6 2 1 10 chain 117878 chr8 145138636 + 65903688 65905468 THE1D-int 1627 + 0 1606 15904 15 4 3 39 20 0 341 0 81 180 235 0 108 7 1 9 1 7 635 0 1 186 chain 27697 chr8 145138636 + 65919103 65919633 L1MA2 4263 + 3593 4114 45321 69 1 0 61 0 2 39 9 10 11 31 28 70 80 75 6 0 3 63 0 1 9 0 1 17 7 0 47 1 0 9 chain 3322 chr8 145138636 + 65923676 65923732 MER20 218 + 122 178 96833 31 4 5 5 1 0 15 chain 12908 chr8 145138636 + 65932299 65932439 L1PA4 6152 + 6003 6143 65236 140 chain 23924 chr8 145138636 + 65979005 65979377 THE1B 368 + 3 368 50908 20 2 1 23 0 1 59 17 18 44 31 24 101 1 0 74 chain 115586 chr8 145138636 + 65979377 65980910 THE1B-int 1605 + 0 1605 16301 41 1 0 7 0 1 359 0 1 17 1 26 51 2 47 226 0 1 296 27 25 135 10 11 181 6 7 173 chain 24395 chr8 145138636 + 65980910 65981274 THE1B 368 + 0 356 50176 13 2 0 34 0 1 57 11 12 52 33 26 98 1 0 63 chain 157988 chr8 145138636 + 66002445 66004598 Charlie3 2679 + 462 2679 11879 49 0 2 6 6 8 102 0 1 12 5 1 22 0 1 78 1 3 60 9 10 62 1 2 7 0 14 29 2 1 225 5 6 123 0 1 735 10 24 50 0 1 36 33 59 287 0 1 91 0 1 31 14 13 49 0 1 13 chain 37385 chr8 145138636 + 66011161 66011785 L1PA11 4918 + 3965 4567 36487 77 26 27 87 2 0 239 1 0 4 10 8 67 3 1 12 67 52 12 4 3 13 chain 229401 chr8 145138636 + 66069485 66072204 L1PA7 6471 + 3734 6465 8761 753 0 1 180 0 4 75 1 2 69 0 4 185 8 7 445 0 1 13 0 1 8 0 1 65 1 0 73 1 0 177 1 0 55 0 1 28 0 1 156 1 2 424 chain 3556 chr8 145138636 + 66113366 66113403 tRNA-Tyr-TAC 38 + 0 37 94792 37 chain 3556 chr8 145138636 + 66113987 66114024 tRNA-Tyr-TAC 38 + 0 37 94791 37 chain 6415 chr8 145138636 + 66114188 66114261 tRNA-Ala-GCY 73 + 0 73 79622 73 chain 37277 chr8 145138636 + 66122147 66122599 MER4A1 472 + 7 472 36567 127 2 15 323 chain 39003 chr8 145138636 + 66192500 66193053 MLT2A2 560 + 0 560 35356 91 1 2 90 38 33 18 0 1 4 0 1 4 3 1 157 0 11 147 chain 16295 chr8 145138636 + 66213332 66213549 MER30 238 + 0 238 60626 102 3 27 68 3 0 41 chain 516063 chr8 145138636 + 66228230 66236771 L1PA7 6471 + 6 6461 2467 197 6 4 32 4 5 158 8 1 70 1 0 104 3 0 165 0 5 34 2 1 38 0 1 30 1 0 402 12 31 57 0 1 4 1 0 796 0 1 49 0 4 312 8 13 111 8 0 234 1 0 6 0 3 133 0 3 36 0 1 52 10 14 184 11 9 5 1 0 74 2123 0 69 0 5 43 2 0 1359 0 3 213 6 2 269 0 1 205 0 2 45 0 4 14 2 1 796 1 10 34 chain 158230 chr8 145138636 + 66231628 66233439 SVA_D 2077 + 6 2064 11858 24 6 0 512 0 40 166 18 15 153 1 5 6 0 133 184 0 78 18 0 1 47 0 1 4 9 8 663 chain 71916 chr8 145138636 + 66247188 66250113 MER11A 1151 + 8 1151 23565 77 1945 70 21 8 0 118 4 0 149 0 1 94 0 1 10 1 0 6 0 1 128 0 2 4 1 0 117 0 81 28 0 9 42 2 0 16 0 1 96 1 10 19 3 7 35 chain 48761 chr8 145138636 + 66247265 66247902 MER11A 1151 + 176 1151 30027 118 4 0 32 0 2 43 0 248 65 0 2 4 1 0 117 0 82 27 0 9 42 1 0 12 1 2 170 chain 4007 chr8 145138636 + 66248176 66248225 MER11A 1151 + 9 58 91405 49 chain 50800 chr8 145138636 + 66248226 66248890 MER11A 1151 + 158 1151 29283 20 14 6 110 4 0 30 0 2 45 0 248 65 0 2 4 1 0 117 0 81 28 0 9 42 1 0 16 0 1 167 chain 4740 chr8 145138636 + 66249154 66249209 MER11A 1151 + 0 55 87011 55 chain 37987 chr8 145138636 + 66259049 66259511 LTR2 463 + 0 463 36083 362 22 23 78 chain 384773 chr8 145138636 + 66317812 66322150 L1P1 4361 + 1 4341 5401 1076 1 4 14 0 1 898 1 2 1513 0 1 43 5 2 543 0 1 52 1 0 154 1 0 36 chain 19312 chr8 145138636 + 66327230 66327480 LTR46-int 301 + 58 299 57228 94 1 0 110 1 0 4 9 2 31 chain 3380 chr8 145138636 + 66327934 66327971 LTR46 455 + 418 455 96297 37 chain 40496 chr8 145138636 + 66351222 66351743 MER41C 542 + 0 542 34309 49 0 1 100 1 0 147 12 33 212 chain 13820 chr8 145138636 + 66381858 66382042 MER30 238 + 32 238 63844 73 4 23 68 0 3 39 chain 40147 chr8 145138636 + 66397017 66397689 L1PB1 5432 + 4778 5420 34559 14 17 25 48 0 1 237 37 11 24 2 1 7 1 0 12 5 1 8 2 0 52 3 2 16 1 0 59 8 12 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 29 chain 4141 chr8 145138636 + 66416898 66416971 L1MA3 4352 + 4241 4310 90504 19 2 0 19 5 4 5 1 0 22 chain 3918 chr8 145138636 + 66484575 66484636 MER20 218 + 114 176 91983 42 4 5 15 chain 7010 chr8 145138636 + 66526920 66527058 L1MB2 1706 + 1509 1631 77565 66 27 13 10 1 0 12 3 2 19 chain 216863 chr8 145138636 + 66576865 66579240 L1PA3long 6157 + 3782 6157 9122 1060 2 1 766 0 1 547 chain 5339 chr8 145138636 + 66590796 66590864 L1MA5A 2387 + 2239 2306 84008 56 1 0 11 chain 3153 chr8 145138636 + 66648132 66648167 L1MD2 1676 + 1335 1370 98339 35 chain 15640 chr8 145138636 + 66734968 66735190 MER44A 345 + 79 314 61483 22 0 10 54 1 2 14 0 3 43 1 0 87 chain 7719 chr8 145138636 + 66736315 66736408 MER2 342 + 155 248 75567 93 chain 9811 chr8 145138636 + 66858723 66858899 MER30 238 + 49 238 70800 36 1 0 15 2 0 6 3 0 7 5 19 30 5 12 16 3 0 26 0 1 21 chain 20960 chr8 145138636 + 66908958 66909316 THE1D 372 + 18 372 55180 38 43 35 56 0 1 18 17 3 10 0 1 6 0 16 11 1 2 10 1 0 147 chain 49752 chr8 145138636 + 66911839 66912531 Tigger1 2417 + 1299 2005 29658 104 0 5 69 19 26 28 1 2 284 1 3 167 1 0 18 chain 33058 chr8 145138636 + 66912539 66912938 L1PA7 6471 + 6064 6465 39469 243 11 13 145 chain 7098 chr8 145138636 + 67004243 67004396 MLT1A1 405 + 247 405 77270 24 20 22 30 25 28 54 chain 4177 chr8 145138636 + 67011781 67011828 U2 167 + 6 53 90276 47 chain 21134 chr8 145138636 + 67019639 67019909 AluY 311 + 29 299 54967 78 0 5 11 1 0 9 0 1 144 7 4 11 2 0 7 chain 24365 chr8 145138636 + 67037004 67037295 AluSp 311 + 0 286 50224 74 5 1 50 1 0 161 chain 67602 chr8 145138636 + 67139253 67139998 L1PA4 6152 + 5401 6146 24543 745 chain 56476 chr8 145138636 + 67188272 67189042 LTR17 781 + 0 781 27433 25 4 0 154 3 2 55 1 0 90 2 1 141 28 25 222 1 23 33 1 0 10 chain 6994 chr8 145138636 + 67205048 67205148 MER30 238 + 0 107 77624 18 11 18 71 chain 6668 chr8 145138636 + 67205348 67205428 MER30B 195 + 115 195 78740 80 chain 18244 chr8 145138636 + 67243620 67243899 L1M1 2793 + 811 1090 58418 20 2 0 8 1 0 53 19 16 45 0 5 45 1 0 56 0 2 29 chain 156439 chr8 145138636 + 67310125 67312255 SVA_F 1814 + 0 1814 11975 479 0 40 364 17 0 17 78 0 45 129 17 39 1 0 10 1 0 109 148 0 61 1 0 483 6 7 127 0 1 15 chain 5152 chr8 145138636 + 67311002 67311080 SVA_F 1814 + 1013 1091 59448 78 chain 7068 chr8 145138636 + 67311125 67311232 SVA_F 1814 + 1136 1214 59448 29 1 0 4 50 22 23 chain 3282 chr8 145138636 + 67311159 67311209 SVA_F 1814 + 1043 1093 64487 50 chain 7961 chr8 145138636 + 67311414 67311511 SVA_F 1814 + 929 1043 69412 7 0 1 10 0 15 76 0 1 4 chain 2931 chr8 145138636 + 67311511 67311547 SVA_F 1814 + 993 1027 69882 8 2 0 26 chain 59674 chr8 145138636 + 67350821 67351466 SVA_D 2077 + 1432 2075 26466 627 2 0 16 chain 48492 chr8 145138636 + 67366342 67367289 MER41B 635 + 0 635 30121 93 1 0 34 1 2 56 312 0 238 1 0 85 1 2 125 chain 26854 chr8 145138636 + 67378009 67378442 LTR7B 505 + 0 505 46464 105 0 10 69 35 11 17 0 88 23 11 12 30 1 0 76 14 13 20 0 1 5 2 0 25 chain 7573 chr8 145138636 + 67388869 67388986 MSTA 426 + 295 408 75922 6 7 0 10 3 6 91 chain 11622 chr8 145138636 + 67469120 67469299 MLT2D 439 + 0 178 67531 38 13 10 30 0 1 13 3 4 82 chain 35384 chr8 145138636 + 67541276 67541712 LTR2 463 + 0 463 37777 55 0 3 102 11 31 216 0 4 52 chain 3746 chr8 145138636 + 67619765 67619894 LTR26E 604 + 370 502 93286 18 72 75 39 chain 4510 chr8 145138636 + 67631411 67631525 LTR12C 1709 + 837 1033 88267 48 30 112 14 8 8 14 chain 146254 chr8 145138636 + 67756038 67757693 L1PA4 6152 + 4302 5973 12595 735 1 18 246 2 1 671 chain 79977 chr8 145138636 + 67761983 67762940 L1PA7 6471 + 5504 6466 21631 117 1 0 698 1 2 93 0 5 47 chain 26269 chr8 145138636 + 67797288 67797679 MLT2A1 477 + 0 397 47321 140 1 2 26 12 17 139 2 1 33 7 14 12 7 1 12 chain 4233 chr8 145138636 + 67816601 67816651 MER20 218 + 168 218 89924 50 chain 35321 chr8 145138636 + 67824739 67825203 LTR2B 499 + 8 499 37815 6 1 0 10 0 10 35 3 0 41 0 7 12 0 12 167 0 1 75 5 6 109 chain 189059 chr8 145138636 + 67843103 67845575 MER4-int 2692 + 119 2692 10160 39 0 10 186 0 1 14 0 11 132 5 6 34 0 20 59 0 1 259 6 0 28 0 1 96 1 0 26 0 3 272 2 1 38 1 5 139 1 0 256 6 5 102 1 2 6 0 10 38 1 0 31 2 0 52 1 0 78 0 1 38 0 9 146 10 1 9 0 52 338 2 1 17 chain 546531 chr8 145138636 + 67893943 67900398 L1PA4 6152 + 0 6136 937 2149 321 0 306 0 1 1830 0 1 472 0 1 1070 1 0 306 chain 28461 chr8 145138636 + 67896101 67896413 AluYb8 318 + 0 307 44180 118 5 0 189 chain 87700 chr8 145138636 + 67921962 67922991 HERV17-int 4347 + 3313 4347 20097 331 0 1 126 9 1 141 1 8 22 0 5 399 chain 29902 chr8 145138636 + 67923305 67923631 LTR17 781 + 0 326 42131 326 chain 4878 chr8 145138636 + 67929272 67929327 L1PA4 6152 + 4957 5012 86270 55 chain 102675 chr8 145138636 + 67929327 67930457 L1PA4 6152 + 5013 6143 17984 1130 chain 5810 chr8 145138636 + 67956508 67956608 MER45B 1037 + 920 1013 81879 35 18 11 47 chain 52014 chr8 145138636 + 67999118 68000000 L1PREC2 3366 + 1214 2105 28873 31 3 4 53 136 152 129 18 8 71 0 1 22 1 0 54 0 3 208 1 0 86 1 0 45 9 10 14 chain 20535 chr8 145138636 + 68018195 68018449 AluSp 311 + 10 264 55737 254 chain 22730 chr8 145138636 + 68147321 68147665 THE1B 368 + 0 368 52787 44 5 20 108 5 4 23 34 44 125 chain 20893 chr8 145138636 + 68197188 68197567 THE1D 372 + 0 372 55262 52 9 0 15 11 12 88 70 71 134 chain 118966 chr8 145138636 + 68271693 68273034 L1P1 4361 + 2509 3848 15711 171 2 1 496 1 0 671 chain 373199 chr8 145138636 + 68276312 68280630 L1P1 4361 + 4 4328 5598 226 20 21 1196 2 3 458 0 1 340 0 2 254 0 4 1001 1 0 638 1 0 157 1 0 23 chain 12387 chr8 145138636 + 68280681 68280831 L1PA5 6144 + 5996 6144 66162 142 2 0 6 chain 5760 chr8 145138636 + 68300293 68300387 L1MB2 1706 + 1598 1694 82086 13 1 0 55 9 12 16 chain 509622 chr8 145138636 + 68362411 68367911 L1PA2 6032 + 0 6031 2789 96 0 524 77 0 7 5327 chain 4187 chr8 145138636 + 68408721 68408774 Tigger3b 1229 + 133 193 90223 6 0 7 47 chain 127900 chr8 145138636 + 68418591 68419988 L1PA3long 6157 + 4756 6157 14298 554 0 4 843 chain 554538 chr8 145138636 + 68459806 68465948 L1PA3long 6157 + 5 6144 445 1143 1 2 98 0 1 851 0 1 1117 0 1 1173 10 3 1749 chain 121101 chr8 145138636 + 68480436 68481988 THE1A-int 1579 + 16 1573 15333 413 13 11 258 3 12 18 0 9 179 15 16 17 0 1 204 1 2 205 14 0 212 chain 19824 chr8 145138636 + 68677090 68677359 L1MA3 4352 + 900 1168 56648 155 0 1 21 11 10 23 1 0 58 chain 29502 chr8 145138636 + 68739356 68739891 L1PA13 3608 + 2986 3488 42605 64 26 28 54 3 1 27 1 0 74 0 3 5 9 6 21 6 4 62 1 0 53 1 0 8 2 0 21 19 0 6 4 2 18 2 0 5 2 0 18 1 0 22 chain 542430 chr8 145138636 + 68743353 68749394 L1PA3long 6157 + 0 6157 1181 144 4 0 10 13 0 622 0 128 1016 0 1 4 2 1 1168 0 1 155 0 1 2891 0 3 12 chain 8268 chr8 145138636 + 68872254 68872712 MLT1E3 631 + 67 475 74240 61 34 40 50 231 225 17 50 0 15 chain 39991 chr8 145138636 + 68888677 68889171 MER9a3 513 + 0 505 34669 17 0 3 69 0 2 19 0 1 60 1 0 6 0 1 132 1 5 120 0 1 69 chain 376591 chr8 145138636 + 68890476 68895123 HERVK9-int 4720 + 36 4720 5542 13 8 5 4 1 0 66 1 0 7 1 0 31 13 12 281 0 3 159 1 2 64 0 1 276 0 1 319 0 4 297 1 0 5 1 3 31 0 1 984 0 1 8 7 88 310 15 17 57 0 1 209 5 4 9 2 0 470 64 3 47 0 1 275 3 4 226 0 8 324 0 1 52 chain 40453 chr8 145138636 + 68895127 68895627 MER9a3 513 + 4 513 34346 14 0 2 54 0 2 34 0 1 66 0 1 52 0 2 203 0 1 77 chain 26452 chr8 145138636 + 68905035 68905391 THE1B 368 + 0 360 47049 15 2 0 22 0 5 130 2 1 8 1 3 176 chain 35263 chr8 145138636 + 68958440 68958955 L1PREC2 3366 + 2344 2850 37854 105 8 7 59 3 0 70 3 2 124 4 0 25 0 1 9 0 1 5 2 0 14 0 1 32 8 7 44 chain 79272 chr8 145138636 + 68968094 68969071 L1P3 4156 + 3115 4131 21788 385 0 13 158 0 24 120 0 5 185 1 0 102 2 0 7 2 1 8 0 1 7 chain 39648 chr8 145138636 + 68972943 68973429 LTR7 482 + 0 482 34927 53 35 0 193 0 31 205 chain 293918 chr8 145138636 + 68973431 68977206 HERVH-int 3825 + 0 3825 7015 211 0 11 310 5 0 38 1 0 10 1 0 24 1 14 13 3 0 25 1 0 42 171 1 12 23 2 16 2 1 49 1 0 93 1 0 357 16 1 173 0 1 37 0 1 108 5 4 127 8 35 209 0 1 1144 9 11 39 8 218 254 3 8 225 chain 3114 chr8 145138636 + 68974226 68974285 HERVH-int 3825 + 604 698 98666 15 1 0 11 4 1 13 0 39 15 chain 38286 chr8 145138636 + 68978314 68978769 LTR7 482 + 0 482 35852 56 5 1 206 1 32 187 chain 20536 chr8 145138636 + 68999876 69000122 LTR12D 1347 + 1101 1347 55736 121 3 3 122 chain 521144 chr8 145138636 + 69019006 69024895 L1PA3long 6157 + 0 5910 2219 153 0 1 210 0 1 350 1 0 51 11 139 1449 109 0 3469 0 1 86 chain 5307 chr8 145138636 + 69029693 69029759 MLT1C 463 + 397 463 84160 66 chain 4128 chr8 145138636 + 69057571 69057619 MLT1E2 623 + 562 610 90601 48 chain 187875 chr8 145138636 + 69125806 69127989 L1P1 4361 + 2163 4341 10219 878 11 10 114 0 1 517 2 0 467 1 0 155 1 0 23 2 1 12 chain 18812 chr8 145138636 + 69149946 69150162 L1PA5 6144 + 5922 6138 57766 216 chain 20595 chr8 145138636 + 69206317 69206613 THE1C 375 + 40 345 55644 109 35 46 9 4 2 139 chain 328531 chr8 145138636 + 69215040 69219452 L1PA11 4918 + 57 4475 6241 21 2 0 35 1 0 17 2 0 50 1 0 30 14 16 106 20 19 81 0 2 449 0 1 90 3 1 241 6 8 125 2 0 186 0 1 98 0 1 178 4 1 377 0 1 21 2 0 12 7 8 10 0 5 48 7 6 62 0 1 176 7 0 167 5 0 170 1 5 176 0 3 567 6 14 5 0 3 44 5 8 375 0 1 31 0 1 216 1 0 4 8 7 55 19 16 66 chain 162630 chr8 145138636 + 69244973 69246874 SVA_D 2077 + 0 2077 11568 13 5 0 12 5 0 132 1 2 393 0 1 212 0 1 134 3 0 18 0 36 72 0 100 65 49 0 112 0 98 423 0 1 252 chain 2395 chr8 145138636 + 69246061 69246087 SVA_D 2077 + 1038 1064 48167 26 chain 552486 chr8 145138636 + 69254219 69260249 L1PA2 6032 + 2 6031 580 253 2 1 5775 chain 530833 chr8 145138636 + 69279902 69286362 L1PA7 6471 + 0 6464 1798 409 0 3 206 0 3 37 1 2 184 0 7 7 8 1 351 0 4 23 0 4 76 0 4 235 1 0 34 0 1 539 0 2 123 0 9 375 1 2 462 0 2 249 3 0 89 0 1 59 0 1 503 1 0 978 1 0 56 4 0 163 0 1 416 1 0 55 14 24 232 31 0 376 5 6 9 0 1 135 3 0 5 chain 4319 chr8 145138636 + 69313615 69313665 Tigger7 736 + 101 151 89373 50 chain 55746 chr8 145138636 + 69320847 69321579 L1PB 1623 + 584 1301 27648 7 13 0 4 1 0 333 1 0 373 chain 23577 chr8 145138636 + 69340128 69340487 THE1B 368 + 0 368 51465 172 1 0 26 4 2 14 0 4 10 7 15 33 24 23 57 1 2 10 chain 309782 chr8 145138636 + 69382155 69386859 L1PA11 4918 + 22 4475 6617 20 11 9 27 4 1 34 1 0 13 0 1 53 1 0 33 2 0 5 2 1 89 26 27 132 2 1 172 0 2 108 8 7 303 8 10 16 0 8 99 1 48 87 0 3 73 7 5 141 0 1 10 1 0 6 3 5 30 1 5 202 28 25 9 0 1 25 2 0 339 1 0 91 4 26 143 15 14 65 1 0 44 0 40 71 0 2 5 6 0 253 0 1 139 369 0 309 7 8 246 1 0 72 16 18 247 0 1 153 12 19 43 11 12 87 0 1 7 1 0 19 1 2 47 2 1 11 2 1 69 chain 20122 chr8 145138636 + 69433170 69433432 L1PA8 5853 + 5591 5847 56231 17 2 0 74 1 0 9 1 0 49 2 1 19 1 0 87 chain 22501 chr8 145138636 + 69480800 69481047 L1PA3long 6157 + 5909 6157 53118 93 0 1 154 chain 3565 chr8 145138636 + 69551753 69551803 MER5A 189 + 26 70 94698 6 6 0 38 chain 20875 chr8 145138636 + 69644521 69644783 AluY 311 + 28 305 55287 100 9 0 22 0 24 131 chain 50494 chr8 145138636 + 69678071 69678698 PABL_A 660 + 25 660 29381 56 0 9 525 10 9 36 chain 40271 chr8 145138636 + 69719455 69719978 HERV1_LTRd 520 + 0 517 34462 54 1 0 4 11 6 295 7 2 34 0 5 117 chain 6310 chr8 145138636 + 69721036 69721112 MLT1J 494 + 96 173 79962 47 0 1 29 chain 4351 chr8 145138636 + 69731299 69731364 MADE1 96 + 15 96 89165 27 5 21 33 chain 14089 chr8 145138636 + 69782040 69782231 L1PA8 5853 + 5666 5853 63473 13 1 0 9 1 0 56 2 1 15 1 0 93 chain 93417 chr8 145138636 + 69797053 69798130 MER11C 1089 + 0 1073 19126 563 11 5 424 1 3 78 chain 13525 chr8 145138636 + 69806909 69807078 L1PREC2 3366 + 2638 2806 64282 9 0 1 103 5 3 52 chain 371831 chr8 145138636 + 69823184 69827301 L1PA3long 6157 + 2055 6151 5622 205 4 0 1871 1 0 1421 16 0 599 chain 533566 chr8 145138636 + 69843306 69849423 L1PA5 6144 + 0 6139 1676 285 0 1 1123 0 5 9 0 9 618 1 0 259 1 0 6 0 1 1193 1 0 421 0 1 413 0 4 443 3 4 47 0 1 1185 0 1 22 0 1 87 chain 78120 chr8 145138636 + 69855613 69856557 SVA_A 1864 + 733 1864 22068 145 2 1 6 1 0 65 2 0 74 2 0 72 38 231 537 chain 392468 chr8 145138636 + 69861987 69866983 L1PA6 6164 + 1467 6162 5277 746 0 2 119 10 7 84 6 22 108 0 1 186 331 15 1089 7 8 118 0 1 206 0 1 75 3 4 183 1 0 55 0 1 81 7 0 284 0 1 272 0 1 197 4 3 665 1 9 9 7 0 142 chain 3047 chr8 145138636 + 69883549 69883581 U2 167 + 0 32 99330 32 chain 523404 chr8 145138636 + 69907259 69913689 L1PA6 6164 + 0 6162 2120 467 1 0 960 7 5 5 0 2 7 1 0 94 1 2 167 12 0 565 0 2 93 141 0 6 109 0 207 0 4 257 0 1 51 14 1 287 1 0 6 0 1 513 1 0 1160 0 1 399 1 0 51 0 1 670 7 8 169 chain 11727 chr8 145138636 + 69909653 69909780 L1PA6 6164 - 5031 5158 53993 127 chain 9603 chr8 145138636 + 69909786 69909890 L1PA6 6164 - 5164 5268 53993 104 chain 9721 chr8 145138636 + 69920619 69920749 MSTA 426 + 264 414 71004 32 1 21 75 1 0 4 0 1 17 chain 12854 chr8 145138636 + 69928436 69928657 Tigger3b 1229 + 51 291 65344 35 29 45 19 1 0 42 5 0 6 0 8 20 0 1 64 chain 20405 chr8 145138636 + 69929012 69929893 Tigger3 1187 + 344 739 55877 39 7 3 30 18 10 19 0 2 63 0 4 23 1 0 22 0 4 12 1 0 26 1 0 1 144 0 20 2 1 25 387 51 40 chain 11383 chr8 145138636 + 69945795 69946093 AluSp 311 + 135 304 67944 32 136 8 54 2 1 74 chain 6859 chr8 145138636 + 69967422 69967501 Tigger1 2417 + 38 117 78108 79 chain 23634 chr8 145138636 + 70004831 70005134 AluY 311 + 0 295 51377 20 1 9 258 16 0 8 chain 26361 chr8 145138636 + 70037806 70038107 AluSp 311 + 9 310 47175 301 chain 21294 chr8 145138636 + 70106414 70106712 AluSp 311 + 10 301 54773 34 27 20 237 chain 3813 chr8 145138636 + 70154802 70154874 L1MA8 2339 + 2122 2192 92752 25 20 18 27 chain 18649 chr8 145138636 + 70199893 70200228 MER2 342 + 0 327 57946 66 54 50 59 15 10 110 2 3 29 chain 72442 chr8 145138636 + 70260795 70261599 L1PA3long 6157 + 5340 6155 23442 483 0 1 162 0 10 159 chain 206867 chr8 145138636 + 70337684 70340527 L1PA11 4918 + 1753 4578 9472 17 0 1 32 8 11 108 0 1 29 3 7 64 0 2 177 1 0 5 3 1 84 3 1 61 0 1 4 0 4 39 8 7 151 0 2 155 1 2 119 51 39 191 0 15 250 0 3 330 7 3 191 9 6 387 1 0 4 3 4 71 13 8 53 2 1 13 2 0 54 4 0 14 2 0 13 1 0 19 50 38 9 1 0 13 2 0 11 chain 8235 chr8 145138636 + 70357346 70357446 HY3 101 + 0 100 74316 100 chain 29649 chr8 145138636 + 70435143 70435452 AluYk12 309 + 0 309 42433 309 chain 5481 chr8 145138636 + 70472665 70472766 MER57-int 2662 + 2343 2424 83312 28 28 8 45 chain 133021 chr8 145138636 + 70511769 70513344 THE1A-int 1579 + 0 1577 13738 259 0 1 1010 1 2 305 chain 28705 chr8 145138636 + 70513346 70513699 THE1A 353 + 0 353 43790 84 0 1 25 1 0 243 chain 271605 chr8 145138636 + 70567233 70571053 L1PB2 3958 + 17 3838 7674 8 6 0 23 23 18 18 5 0 20 9 4 31 2 0 32 1 0 4 9 3 10 4 20 20 4 1 130 0 1 78 0 2 32 0 2 197 0 1 35 4 8 41 0 1 8 4 0 8 16 5 264 1 0 100 0 1 108 37 37 16 0 3 38 0 7 227 1 0 371 0 2 45 0 1 212 0 1 145 0 1 34 0 1 89 16 10 242 9 8 78 0 8 73 1 0 24 1 0 280 0 1 63 0 3 38 2 0 33 12 13 8 1 0 8 1 0 7 1 4 51 7 5 13 2 0 94 0 4 16 0 6 6 8 3 7 0 2 28 1 0 48 0 6 10 1 0 72 2 0 21 2 1 63 chain 99757 chr8 145138636 + 70584366 70585477 L1PA4 6152 + 4072 5192 18325 279 0 4 520 0 4 284 0 1 28 chain 81937 chr8 145138636 + 70684606 70685503 L1PA3long 6157 + 5258 6155 21258 897 chain 34668 chr8 145138636 + 70685511 70685889 L1PA3long 6157 + 5774 6152 38239 378 chain 42972 chr8 145138636 + 70710746 70711496 L1PA15 4387 + 3634 4366 32790 21 0 1 117 18 19 21 5 6 8 4 0 62 6 7 15 8 11 10 1 0 122 2 0 48 1 0 29 1 0 51 23 19 16 1 0 39 20 17 41 3 1 12 6 1 28 1 0 10 chain 6691 chr8 145138636 + 70746690 70746772 MSTC 436 + 0 82 78667 82 chain 288236 chr8 145138636 + 70752713 70755918 L1PA3long 6157 + 2940 6155 7189 325 0 2 942 0 1 216 0 1 369 0 2 512 0 4 16 0 1 684 1 0 140 chain 535711 chr8 145138636 + 70808322 70814453 L1PA4 6152 + 12 6151 1582 425 0 1 678 4 5 332 0 4 777 0 1 2794 0 2 318 1 0 578 0 1 206 1 0 17 chain 307995 chr8 145138636 + 70848621 70853008 L1PA7 6471 + 2486 6468 6659 34 8 12 100 12 0 257 6 10 81 9 10 82 36 16 396 1 2 10 5 1 276 0 1 53 3 2 122 0 1 4 1 0 38 0 2 18 320 0 46 1 0 4 0 1 78 0 1 5 1 0 52 0 1 37 1 5 229 0 1 1147 1 0 48 0 1 166 1 3 94 0 1 4 7 0 11 87 26 119 1 0 42 0 1 183 9 6 125 0 1 16 chain 394110 chr8 145138636 + 70877554 70882268 L1PA6 6164 + 1390 6162 5245 290 3 6 18 1 0 253 0 1 55 0 4 240 0 1 82 0 1 645 1 0 544 5 3 54 0 35 276 1 2 106 0 1 184 0 1 123 0 1 150 0 1 283 0 1 230 0 1 56 0 1 273 0 4 18 0 1 465 0 2 200 4 5 15 0 1 139 chain 22010 chr8 145138636 + 70970763 70971014 L1PA7 6471 + 5769 6020 53819 251 chain 8926 chr8 145138636 + 71245535 71245652 MER30 238 + 124 238 72727 75 3 0 39 chain 25734 chr8 145138636 + 71399512 71399877 L1PA10 4194 + 3805 4161 48118 37 10 11 149 5 0 68 7 6 40 3 0 34 1 0 11 chain 554459 chr8 145138636 + 71406360 71412376 L1PA2 6032 + 0 6016 447 1112 0 2 2579 8 4 1557 1 3 759 chain 506039 chr8 145138636 + 71451793 71457650 L1PA5 6144 + 3 5873 2929 1024 1 0 33 1 2 162 1 0 1433 0 2 505 0 12 134 0 1 102 0 1 95 2 0 382 0 1 41 0 1 623 0 1 272 1 0 33 3 1 1009 chain 4637 chr8 145138636 + 71470473 71470553 MADE1 96 + 0 96 87609 31 1 17 48 chain 89146 chr8 145138636 + 71473158 71474209 L1PA7 6471 + 5417 6470 19831 7 1 0 202 0 2 508 0 1 170 19 20 131 1 0 12 chain 19414 chr8 145138636 + 71534599 71534859 L1PA8A 6298 + 6027 6291 57117 215 2 0 6 10 16 27 chain 20684 chr8 145138636 + 71571255 71571498 L1PA7 6471 + 6213 6457 55521 108 0 1 135 chain 498512 chr8 145138636 + 71581624 71587383 L1PA5 6144 + 0 5774 3184 1709 8 7 258 0 1 388 0 2 914 0 1 318 0 4 747 0 4 173 2 1 27 1 2 741 0 4 473 chain 22366 chr8 145138636 + 71612325 71612684 THE1C 375 + 0 363 53319 138 13 17 24 22 19 105 7 9 24 3 5 9 1 0 13 chain 223551 chr8 145138636 + 71665028 71668564 HERVH-int 3825 + 0 3825 8941 329 16 15 20 13 5 41 11 10 28 0 1 8 48 5 11 0 2 10 1 0 27 1 266 101 1 4 312 1 0 5 0 1 24 52 22 153 1 0 27 22 5 256 0 27 235 0 35 15 0 2 70 18 23 313 0 1 5 5 4 120 5 13 253 0 4 11 430 469 537 chain 39494 chr8 145138636 + 71674936 71675374 LTR7 482 + 0 469 35015 264 0 31 174 chain 287537 chr8 145138636 + 71675389 71678952 HERVH-int 3825 + 0 3825 7212 212 0 11 246 3 121 14 112 0 15 1 0 11 24 19 8 1 0 41 0 20 11 2 1 24 9 18 7 1 0 447 15 0 215 0 1 239 8 35 215 5 3 72 0 4 1110 8 218 487 chain 3787 chr8 145138636 + 71675864 71675907 HERVH-int 3825 + 655 698 92323 43 chain 37648 chr8 145138636 + 71680213 71680660 LTR7 482 + 0 482 36308 230 0 31 74 0 6 20 0 1 4 4 1 115 chain 14374 chr8 145138636 + 71691438 71691637 MER107 203 + 14 203 63077 5 0 1 137 5 0 5 6 0 41 chain 19636 chr8 145138636 + 71713847 71714146 THE1C 375 + 0 342 56873 61 14 61 57 15 11 152 chain 5045 chr8 145138636 + 71797008 71797079 L1MA4 2864 + 2740 2809 85440 25 3 1 43 chain 5399 chr8 145138636 + 71803488 71803589 MER30 238 + 130 228 83703 45 30 0 9 0 27 17 chain 540517 chr8 145138636 + 71820261 71826395 L1PA4 6152 + 1 6141 1307 1019 1 0 223 0 1 1057 0 1 319 0 2 234 0 1 2773 0 1 111 0 1 397 chain 131370 chr8 145138636 + 71878638 71880266 L1PA7 6471 + 4785 6416 13883 24 0 1 141 1 0 747 0 2 516 0 1 90 11 12 64 4 3 30 chain 7924 chr8 145138636 + 71890002 71890102 MER41B 635 + 0 100 75060 100 chain 38431 chr8 145138636 + 71900087 71900515 L1PA3long 6157 + 5714 6142 35769 428 chain 10697 chr8 145138636 + 71910882 71911030 MER30 238 + 32 199 69050 75 5 24 68 chain 42072 chr8 145138636 + 71935860 71936385 L1P1 4361 + 3817 4341 33310 85 4 5 243 1 0 79 0 1 69 7 6 23 2 1 12 chain 23231 chr8 145138636 + 71992809 71993103 AluY 311 + 0 287 52034 51 10 6 76 3 0 154 chain 23069 chr8 145138636 + 72025144 72025516 THE1D 372 + 7 372 52262 4 1 0 29 16 7 21 10 11 103 26 29 13 1 0 148 chain 7602 chr8 145138636 + 72128343 72128437 MER4D0 881 + 298 392 75864 44 1 0 35 0 1 14 chain 434756 chr8 145138636 + 72184544 72190009 L1PA8 5853 + 50 5530 4671 18 8 6 8 1 0 14 19 12 70 0 1 123 22 11 97 0 1 250 0 1 632 1 0 65 3 0 85 0 1 78 2 0 218 0 1 797 0 18 373 1 5 346 1 6 585 0 1 351 0 13 239 1 7 247 15 13 252 1 3 11 1 0 323 8 0 134 1 0 64 chain 16469 chr8 145138636 + 72202052 72202317 THE1D 372 + 103 371 60414 79 26 29 4 0 1 9 1 0 19 10 10 117 chain 274801 chr8 145138636 + 72257451 72261560 L1PA10 4194 + 126 4150 7585 11 4 0 7 51 35 10 1 0 12 3 0 6 2 0 5 48 40 20 2 0 14 1 0 8 57 31 10 2 0 21 1 0 7 2 1 10 1 0 6 5 0 15 7 0 8 9 8 73 3 0 138 28 25 232 0 1 4 31 32 238 0 2 6 15 16 170 7 1 97 0 2 6 16 7 360 0 1 364 7 3 60 1 5 369 0 1 32 5 1 53 0 1 52 13 17 152 0 1 22 14 1 16 6 18 89 0 1 336 0 1 42 8 8 159 0 1 25 21 25 84 1 0 6 0 2 109 4 5 233 3 0 26 0 1 7 chain 431517 chr8 145138636 + 72291053 72296125 L1PA5 6144 + 0 4989 4729 424 0 1 126 1 2 1033 0 1 228 0 1 216 90 0 1650 2 1 943 0 4 359 chain 514666 chr8 145138636 + 72321149 72327129 L1PA5 6144 + 0 6144 2532 192 11 18 21 0 110 382 0 1 416 0 5 267 0 2 903 2 44 7 0 2 806 2 0 198 0 1 219 5 6 74 4 1 866 25 12 407 0 4 576 0 7 597 chain 60690 chr8 145138636 + 72367659 72368588 L1PB1 5432 + 4498 5422 26180 18 1 17 93 3 0 51 0 1 120 1 0 156 9 10 138 2 3 10 3 0 23 1 0 9 1 0 11 5 1 8 2 0 53 2 1 14 2 1 45 1 0 15 1 0 6 18 9 16 2 0 5 1 0 14 2 0 23 1 0 8 5 16 11 1 0 18 chain 37961 chr8 145138636 + 72387851 72388497 LTR12F 595 + 0 595 36100 93 25 0 10 6 1 33 23 2 30 79 79 197 0 1 4 1 0 145 chain 445469 chr8 145138636 + 72388565 72393977 HERV9-int 5642 + 10 5445 4464 292 20 23 44 0 4 66 12 3 141 1 2 43 0 1 4 1 0 83 6 0 110 1 23 14 0 2 238 0 1 1351 2 7 490 0 1 1319 41 43 6 2 0 37 1 0 29 4 5 592 1 2 4 1 0 240 1 0 215 chain 44089 chr8 145138636 + 72394920 72395572 LTR12F 595 + 0 595 32090 92 8 20 31 69 0 34 0 8 25 14 5 25 1 2 353 chain 285641 chr8 145138636 + 72405855 72409906 L1PA10 4194 + 175 4161 7267 12 2 0 12 3 0 7 2 0 10 51 43 12 2 0 15 1 0 8 20 14 5 1 0 22 2 0 21 1 0 7 5 4 6 5 0 7 1 0 7 3 0 8 4 0 3 5 0 5 1 0 13 1 2 53 1 0 4 14 4 10 0 9 698 1 0 341 9 8 89 5 9 322 2 1 145 0 1 4 1 0 108 0 3 51 0 10 8 17 7 307 3 2 51 21 20 26 48 48 39 8 10 15 1 0 139 19 0 111 0 1 57 0 1 484 1 2 494 17 15 25 1 0 11 chain 553639 chr8 145138636 + 72479440 72485463 L1PA2 6032 + 7 6032 507 249 1 0 777 0 3 4996 chain 10845 chr8 145138636 + 72514828 72514974 L1PA8 5853 + 5711 5852 68784 32 1 0 17 2 0 42 2 0 50 chain 5558 chr8 145138636 + 72546531 72546620 Tigger1 2417 + 871 959 83000 22 9 8 58 chain 163527 chr8 145138636 + 72598122 72599971 L1PA4 6152 + 3660 5519 11509 688 0 4 277 1 0 498 0 3 349 1 5 35 chain 3386 chr8 145138636 + 72620081 72620125 MER33 330 + 209 253 96219 44 chain 45287 chr8 145138636 + 72699764 72700361 L1PA8 5853 + 5265 5853 31429 14 3 1 59 0 1 172 4 3 49 1 0 46 2 0 69 16 14 47 2 1 21 1 0 91 chain 525073 chr8 145138636 + 72712682 72718550 L1PA4 6152 + 7 5877 2047 223 0 1 4169 0 1 1476 chain 26890 chr8 145138636 + 72741775 72742108 L1PB1 5432 + 4751 5083 46423 101 1 0 231 chain 52781 chr8 145138636 + 72775819 72776399 L1PA5 6144 + 5552 6132 28644 580 chain 17877 chr8 145138636 + 72982510 72982812 THE1B 368 + 0 306 58795 107 28 29 40 23 24 14 0 4 12 1 0 12 1 0 64 chain 112736 chr8 145138636 + 72990382 72991890 THE1C-int 1605 + 26 1605 16718 77 7 61 100 2 1 64 0 6 110 0 7 48 6 7 74 6 10 40 4 5 50 0 5 7 5 0 51 6 0 269 0 4 296 0 1 135 3 4 43 5 4 100 chain 28427 chr8 145138636 + 72997863 72998318 LTR7 482 + 0 475 44226 71 7 44 65 51 0 40 0 1 12 0 31 102 0 1 52 17 18 38 chain 3147 chr8 145138636 + 73006434 73006467 U1 164 + 0 33 98388 33 chain 6230 chr8 145138636 + 73032400 73032674 Tigger3d 321 + 17 299 80240 16 73 67 48 96 110 41 chain 480269 chr8 145138636 + 73056357 73061898 L1PA6 6164 + 574 6159 3629 76 1 0 137 0 17 603 0 5 19 0 5 10 1 0 185 1 2 19 0 1 6 1 0 554 0 2 109 2 3 40 0 2 30 0 4 633 1 0 15 1 0 138 1 2 936 0 2 241 0 4 928 0 6 11 3 0 469 0 1 370 chain 50160 chr8 145138636 + 73129725 73130305 LTR10C 591 + 0 584 29502 102 0 2 190 0 1 262 0 1 26 chain 49894 chr8 145138636 + 73208961 73209924 L1PA8 5853 + 5209 5853 29603 264 321 0 91 1 0 23 0 8 15 2 0 69 1 0 8 2 1 15 0 1 36 2 1 19 2 1 92 chain 123227 chr8 145138636 + 73254743 73256104 L1PA3long 6157 + 4771 6142 14990 753 8 18 600 chain 24716 chr8 145138636 + 73260264 73260546 L1PA5 6144 + 5862 6144 49701 29 1 0 103 0 1 149 chain 39116 chr8 145138636 + 73260740 73261261 MLT2A2 560 + 0 560 35274 190 0 4 121 1 0 23 1 26 33 5 16 147 chain 3903 chr8 145138636 + 73328565 73328610 MLT1C 463 + 64 109 92104 45 chain 30140 chr8 145138636 + 73372643 73373030 THE1C-int 1605 + 1219 1605 41895 85 7 6 108 0 1 166 2 1 19 chain 30328 chr8 145138636 + 73373030 73373407 THE1C 375 + 0 375 41731 186 1 0 164 1 0 25 chain 22152 chr8 145138636 + 73374615 73374892 L1PA16 3655 + 3312 3590 53632 105 0 4 157 3 0 12 chain 26805 chr8 145138636 + 73376067 73376431 THE1B 368 + 0 368 46532 169 1 0 29 0 3 8 0 3 4 0 1 15 12 10 126 chain 7924 chr8 145138636 + 73390378 73390502 MLT1A0 366 + 25 147 75062 8 2 0 24 10 9 21 0 1 59 chain 24344 chr8 145138636 + 73401647 73402058 L1PA13 3608 + 3129 3518 50257 4 1 0 27 7 6 26 1 0 81 2 0 61 1 0 57 1 0 5 2 0 45 11 7 15 4 3 26 20 12 14 chain 149925 chr8 145138636 + 73467775 73469458 L1PA5 6144 + 4453 6137 12353 261 2 0 122 4 5 170 0 1 281 0 1 843 chain 493883 chr8 145138636 + 73568857 73574910 L1PA6 6164 + 0 6158 3311 80 0 1 62 0 12 40 0 1 313 4 3 123 0 7 7 10 3 281 0 25 404 5 6 63 0 5 10 1 0 148 138 0 364 1 204 29 0 2 127 5 6 235 1 0 629 2 1 322 0 1 390 0 2 258 4 0 727 0 1 105 2 0 318 1 0 517 1 0 326 chain 7671 chr8 145138636 + 73646397 73646875 L1MD2 1676 + 385 858 75700 17 33 30 34 8 9 15 287 286 55 5 3 24 chain 329316 chr8 145138636 + 73680342 73686066 L1PB1 5432 + 173 5217 6228 59 16 16 52 17 23 204 145 146 50 8 6 146 5 8 23 0 1 51 2 1 5 0 1 31 6 5 228 2 1 56 0 1 5 17 16 79 58 57 359 0 1 28 1 0 222 5 8 101 5 4 80 6 9 123 1 0 24 0 1 21 0 6 187 1 2 149 30 38 13 29 23 45 2 1 168 1 0 162 0 1 8 3 7 93 0 1 42 1 0 99 0 1 257 2 5 22 28 27 97 0 1 278 1 0 5 0 1 18 17 16 142 0 1 264 0 4 19 5 6 71 0 2 65 790 88 243 18 14 21 1 0 6 1 0 12 19 13 48 chain 270939 chr8 145138636 + 73698103 73701941 L1MA2 4263 + 214 4114 7687 42 1 0 22 1 0 54 1 0 33 2 3 121 1 0 19 0 12 116 5 0 301 0 3 69 0 2 40 43 3 120 0 3 52 0 14 208 0 1 4 42 45 18 2 1 428 0 3 23 9 0 197 0 4 411 9 10 48 3 1 56 5 0 75 2 23 14 23 50 45 5 6 136 1 2 190 13 10 242 1 0 72 1 0 18 12 56 22 1 0 147 3 0 147 22 22 58 0 4 18 7 0 47 1 0 9 chain 10590 chr8 145138636 + 73726200 73726419 L1PB1 5432 + 5225 5422 69242 11 1 0 12 5 4 28 1 0 16 1 0 6 16 6 18 9 6 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 4273 chr8 145138636 + 73818330 73818503 L2a 937 + 360 530 89671 31 104 102 26 1 0 11 chain 20845 chr8 145138636 + 73818597 73818991 MSTB 430 + 6 430 55313 79 23 21 18 17 32 26 1 0 4 0 1 12 21 29 14 4 5 46 2 1 13 5 10 77 0 4 32 chain 9072 chr8 145138636 + 73821864 73821965 HERV17-int 4347 + 4246 4347 72398 101 chain 28989 chr8 145138636 + 73822277 73822603 LTR17 781 + 0 326 43346 326 chain 25826 chr8 145138636 + 73838812 73839150 MER51A 677 + 336 677 47983 176 2 1 25 9 10 66 0 3 60 chain 3338 chr8 145138636 + 73842853 73842920 L1MB7 1623 + 1353 1420 96703 22 14 13 23 0 1 8 chain 135445 chr8 145138636 + 73844167 73845726 SVA_B 1603 + 40 1603 13493 106 0 1 782 1 4 43 1 0 190 0 4 427 3 0 6 chain 101772 chr8 145138636 + 73862283 73863590 L1PA2 6032 + 4741 6031 18091 143 17 0 1147 chain 35345 chr8 145138636 + 73906024 73906499 LTR12F 595 + 0 571 37802 75 0 110 22 23 8 149 1 2 205 chain 450957 chr8 145138636 + 73906561 73912247 HERV9-int 5642 + 13 5642 4368 101 10 11 348 0 17 84 38 0 12 15 17 17 12 0 77 21 0 19 6 0 129 7 5 69 0 1 72 0 7 9 0 5 88 3 2 9 6 8 25 6 0 1747 0 14 129 5 1 54 0 1 42 0 1 28 1 2 18 0 2 485 0 3 570 0 13 729 1 2 4 1 0 240 1 0 145 2 1 81 9 7 35 2 0 25 3 2 58 1 0 14 28 5 19 9 3 17 chain 36219 chr8 145138636 + 73913587 73914040 LTR12F 595 + 0 595 37256 50 0 1 4 1 0 36 1 144 89 2 0 40 0 1 230 chain 22621 chr8 145138636 + 73914046 73914315 AluSg4 309 + 36 302 52955 261 3 0 5 chain 4227 chr8 145138636 + 73924622 73924697 L1MB3 1562 + 1445 1522 89954 18 9 8 28 0 3 20 chain 49070 chr8 145138636 + 73938490 73939165 THE1B-int 1605 + 0 685 29921 417 14 0 9 0 25 112 23 20 10 0 2 90 chain 4011 chr8 145138636 + 73940952 73940994 THE1B-int 1605 + 1556 1598 91374 42 chain 9830 chr8 145138636 + 73983397 73983559 MER30 238 + 37 237 70759 45 12 13 15 1 28 9 0 1 5 1 7 36 0 3 38 chain 528108 chr8 145138636 + 74015892 74022080 L1PA6 6164 + 0 6162 1909 412 1 2 95 2 1 232 0 1 54 17 0 289 0 3 437 0 1 130 0 1 676 21 1 848 1 2 4 0 1 74 0 3 837 0 1 215 0 1 1833 2 0 8 chain 23922 chr8 145138636 + 74029340 74029652 THE1C 375 + 0 311 50910 74 0 2 104 0 1 2 8 0 76 0 4 48 chain 33276 chr8 145138636 + 74032264 74032701 LTR2 463 + 0 463 39282 111 7 5 14 0 4 17 0 21 54 0 5 180 1 0 28 1 0 24 chain 88887 chr8 145138636 + 74041022 74042131 MER11A 1151 + 0 1144 19874 108 0 2 66 8 0 23 2 0 28 0 4 60 0 2 389 4 3 7 1 0 116 0 1 12 5 38 29 0 3 26 0 1 53 0 1 172 chain 15700 chr8 145138636 + 74123397 74123684 Tigger3a 397 + 42 395 61402 30 36 71 36 0 4 64 6 34 52 21 20 42 chain 71805 chr8 145138636 + 74132748 74133724 Tigger1 2417 + 758 1741 23591 160 24 16 30 4 8 4 1 0 47 0 1 83 4 5 172 0 8 57 6 8 384 chain 20666 chr8 145138636 + 74133750 74134926 L1PB4 2604 + 1696 2481 55547 19 1 0 167 0 3 12 896 503 81 chain 4057 chr8 145138636 + 74152396 74152493 LTR16C 481 + 199 304 91032 30 37 45 30 chain 531852 chr8 145138636 + 74156214 74162642 L1PA7 6471 + 7 6470 1758 270 0 1 88 6 7 1289 0 1 371 0 1 37 0 1 353 0 3 91 0 2 108 5 10 735 1 2 195 0 4 260 9 1 239 0 1 161 1 0 4 0 1 14 0 1 105 0 1 5 1 0 302 0 4 195 0 1 17 0 8 363 13 21 61 1 0 123 0 1 154 1 0 669 0 1 181 chain 5347 chr8 145138636 + 74172330 74172407 L1PB1 5432 + 5348 5422 83966 21 1 0 22 1 0 13 1 0 18 chain 39908 chr8 145138636 + 74176583 74177431 MER41A 554 + 0 546 34731 85 0 1 236 7 8 25 3 2 51 0 4 14 310 3 117 chain 11548 chr8 145138636 + 74250564 74250733 MER30 238 + 56 238 67666 24 1 0 27 5 22 70 5 2 37 chain 368418 chr8 145138636 + 74252459 74256535 L1PA4 6152 + 2051 6134 5690 266 1 0 69 0 4 2914 0 4 826 chain 24047 chr8 145138636 + 74278363 74278657 HERVL-int 5654 + 4720 5020 50733 181 0 3 75 0 3 38 chain 7512 chr8 145138636 + 74376686 74376791 HY3 101 + 0 100 76097 6 1 0 58 5 1 35 chain 7708 chr8 145138636 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79552047 79552822 L1PB3 3668 + 1856 2635 30104 15 10 7 19 0 3 8 37 51 74 87 74 234 0 2 108 0 1 183 chain 79042 chr8 145138636 + 79563380 79564380 L1PA8 5853 + 4853 5853 21856 156 0 2 54 3 7 280 0 1 211 1 0 45 2 0 69 2 1 8 2 1 52 2 1 19 2 1 92 chain 15249 chr8 145138636 + 79587681 79587845 L1PA2 6032 + 5794 5958 61980 164 chain 73597 chr8 145138636 + 79594149 79595178 L1PB2 3958 + 2821 3838 23193 84 0 3 17 4 2 120 0 4 62 0 1 193 2 0 56 1 0 14 11 6 54 3 1 13 4 0 94 1 0 73 1 0 49 4 6 8 1 0 59 6 0 9 0 4 21 2 1 63 chain 11582 chr8 145138636 + 79674475 79674642 THE1B 368 + 135 306 67601 34 1 0 29 0 3 6 3 7 18 1 0 10 1 0 64 chain 114680 chr8 145138636 + 79679403 79680684 L1PA5 6144 + 3884 5165 16436 1281 chain 15372 chr8 145138636 + 79687926 79688135 MER107 203 + 1 203 61829 152 0 1 4 12 1 17 0 3 24 chain 293190 chr8 145138636 + 79710622 79714192 L1PA7 6471 + 2874 6469 7033 204 0 1 8 0 13 282 0 1 47 0 3 51 1 2 4 1 0 41 1 2 79 2 0 385 25 18 242 0 1 21 2 0 117 0 1 88 1 2 217 0 7 244 1 0 126 1 2 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Tigger3b 1229 + 286 914 33240 10 1 0 13 5 6 14 7 6 32 0 1 4 0 1 194 3 13 36 0 4 37 0 6 30 1 3 75 3 0 143 chain 15416 chr8 145138636 + 80334083 80334304 MER30 238 + 4 238 61766 108 3 19 52 10 7 48 chain 5412 chr8 145138636 + 80368905 80368969 MER58D 378 + 306 370 83646 64 chain 21559 chr8 145138636 + 80468107 80468354 AluY 311 + 29 277 54426 103 0 1 144 chain 3613 chr8 145138636 + 80560566 80560607 U7 62 + 0 41 94321 41 chain 490765 chr8 145138636 + 80649191 80654717 L1PA4 6152 + 13 5517 3401 115 14 0 14 10 24 271 0 1 605 0 2 52 5 0 3239 22 1 284 0 1 895 chain 44239 chr8 145138636 + 80672082 80672763 L1PA16 3655 + 2907 3589 31990 15 1 0 29 0 1 23 8 9 6 1 0 210 6 5 85 2 0 54 53 60 173 3 0 12 chain 3368 chr8 145138636 + 80707558 80707633 MADE2 80 + 0 74 96399 23 27 26 25 chain 7512 chr8 145138636 + 80736647 80736837 L1PB1 5432 + 5255 5423 76098 26 1 0 15 2 0 6 17 7 17 33 28 16 2 1 21 1 0 12 1 0 14 1 0 5 chain 246797 chr8 145138636 + 80739715 80742545 HERV17-int 4347 + 1519 4347 8308 37 0 1 561 4 0 1029 3 1 176 2 1 90 0 2 196 0 1 6 1 0 227 0 2 498 chain 27311 chr8 145138636 + 80742864 80743192 LTR17 781 + 1 326 45812 66 0 1 123 4 0 15 0 1 7 1 0 112 chain 341843 chr8 145138636 + 80799638 80804167 L1PA11 4918 + 3 4501 6027 39 2 0 36 4 1 36 1 0 13 2 0 53 1 0 32 14 8 17 1 2 29 4 3 71 2 0 5 5 7 403 6 14 111 0 1 559 15 8 168 0 1 156 1 0 34 0 1 280 13 5 107 1 0 4 0 1 56 10 9 226 3 4 24 1 2 11 12 0 175 4 0 375 0 1 105 0 1 139 3 0 96 0 1 38 0 2 37 4 7 9 1 0 161 2 5 356 1 2 209 1 0 35 0 2 32 9 8 57 2 1 13 3 0 65 2 0 16 1 0 4 0 3 6 chain 447236 chr8 145138636 + 80822965 80828180 L1PA5 6144 + 0 5233 4428 16 2 0 104 2 16 20 0 12 845 1 0 141 0 3 12 9 0 401 0 3 740 2 1 862 1 0 306 0 4 863 0 4 248 0 1 26 1 0 477 8 0 128 chain 14770 chr8 145138636 + 80840206 80840443 MER30 238 + 0 238 62569 54 6 7 32 35 35 110 chain 51031 chr8 145138636 + 80851157 80851734 L1PA4 6152 + 5577 6151 29206 241 1 0 48 2 0 285 chain 27588 chr8 145138636 + 80944886 80945240 THE1A 353 + 0 353 45468 109 2 1 243 chain 124082 chr8 145138636 + 80945240 80946817 THE1A-int 1579 + 0 1579 14834 15 0 2 389 19 19 73 1 0 518 4 5 139 0 1 77 1 0 341 chain 27261 chr8 145138636 + 80946817 80947171 THE1A 353 + 0 353 45881 89 1 0 20 2 1 110 2 3 130 chain 28108 chr8 145138636 + 80948494 80948859 THE1B 368 + 0 368 44703 15 2 0 25 0 5 124 1 0 31 0 2 91 1 0 75 chain 111335 chr8 145138636 + 80952879 80954512 L1PA7 6471 + 5114 6454 16901 328 0 4 88 5 6 84 6 5 29 301 0 42 1 4 616 2 3 131 chain 38542 chr8 145138636 + 80955261 80955686 L1PA4 6152 + 5726 6151 35677 172 1 0 98 1 2 153 chain 112976 chr8 145138636 + 81056191 81057456 L1PA5 6144 + 4604 5870 16677 612 1 2 652 chain 454800 chr8 145138636 + 81165353 81171344 L1PA7 6471 + 1 6469 4267 157 0 1 4 26 9 38 0 1 192 27 40 31 1 0 141 1 0 53 50 47 104 1 0 967 0 1 356 8 1 5 0 2 110 1 0 152 6 0 10 5 8 28 0 779 211 10 2 383 0 2 173 1 0 5 269 0 28 15 10 505 5 8 98 8 0 322 3 1 635 1 0 9 0 1 67 0 2 769 chain 41684 chr8 145138636 + 81195953 81196485 MER41A 554 + 0 554 33564 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81600838 LTR6A 649 + 1 634 32131 60 33 31 13 2 1 24 15 13 65 0 3 165 9 10 54 0 1 148 1 0 45 chain 10552 chr8 145138636 + 81637162 81637349 L1MA3 4352 + 40 217 69318 26 30 26 57 0 1 5 2 0 20 5 0 42 chain 41970 chr8 145138636 + 81672937 81673588 MER4A 717 + 0 717 33372 43 0 1 77 1 2 4 1 0 78 2 1 52 3 15 95 1 41 11 1 5 60 14 5 25 0 13 23 9 13 79 6 7 23 0 1 30 0 1 6 1 0 6 chain 19419 chr8 145138636 + 81697940 81699262 HSMAR2 1300 + 589 1299 57112 156 23 24 90 1009 391 13 3 8 28 chain 8668 chr8 145138636 + 81733079 81733334 MER96B 391 - 113 352 73299 4 1 0 46 92 78 21 3 2 63 4 5 5 1 0 15 chain 551699 chr8 145138636 + 81768216 81774242 L1PA2 6032 + 2 6032 623 72 0 1 182 1 0 47 0 4 2644 1 0 2929 1 2 149 chain 35919 chr8 145138636 + 81797966 81798379 L1PA7 6471 + 6057 6469 37460 82 1 0 330 chain 206902 chr8 145138636 + 81849755 81852181 L1PA6 6164 + 3729 6162 9470 264 4 3 70 0 1 183 1 0 1062 0 4 117 5 0 71 0 3 272 0 7 218 1 0 116 0 1 37 1 0 4 chain 6178 chr8 145138636 + 81852328 81852510 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0 13 203 11 12 222 chain 26197 chr8 145138636 + 82230486 82230840 THE1B 368 + 0 368 47429 33 7 22 111 7 6 196 chain 8337 chr8 145138636 + 82280199 82280300 MER85 139 + 33 134 74064 101 chain 20150 chr8 145138636 + 82315722 82315983 L1PA7 6471 + 5493 5761 56189 145 7 8 35 0 4 13 0 2 61 chain 62489 chr8 145138636 + 82322106 82322800 L1PA4 6152 + 4655 5350 25755 327 0 1 367 chain 22909 chr8 145138636 + 82355904 82356177 AluY 311 + 28 303 52499 104 0 1 144 4 5 21 chain 115364 chr8 145138636 + 82441240 82442829 LTR12C 1709 + 0 1709 16334 263 1 2 13 5 1 11 0 6 42 10 53 73 8 7 103 1 0 131 17 134 38 1 0 50 5 0 185 1 0 5 3 1 97 44 13 53 7 4 7 0 3 332 1 0 82 chain 2897 chr8 145138636 + 82467237 82467270 L1PB 1623 + 231 264 100857 33 chain 127919 chr8 145138636 + 82483922 82485357 L1PA4 6152 + 3756 5192 14296 182 0 1 1253 chain 28569 chr8 145138636 + 82490317 82490675 L1PA7 6471 + 5300 5657 44000 321 1 0 36 chain 19347 chr8 145138636 + 82509866 82510084 L1PA3long 6157 + 3661 3878 57184 6 1 0 211 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17 24 65 0 12 50 2 0 5 chain 6950 chr8 145138636 + 83215124 83215231 L1P4d 1608 + 17 122 77774 11 1 0 10 7 6 78 chain 90155 chr8 145138636 + 83233264 83234308 L1PA4 6152 + 2342 3377 19655 155 7 8 661 5 0 183 5 0 28 chain 299241 chr8 145138636 + 83267121 83270631 L1PA5 6144 + 1621 5380 6853 191 1 2 543 5 6 468 0 232 620 6 5 136 0 1 1368 0 11 89 1 5 82 chain 105841 chr8 145138636 + 83280499 83281792 L1P1 4361 + 2812 4108 17585 407 0 2 688 0 1 198 chain 4296 chr8 145138636 + 83290831 83290927 LTR12E 1234 + 773 828 89535 30 41 0 25 chain 2844 chr8 145138636 + 83304724 83304877 L2a 937 + 184 327 101275 19 108 98 26 chain 5345 chr8 145138636 + 83314618 83314696 MADE1 96 + 2 96 83976 28 3 19 47 chain 413014 chr8 145138636 + 83321479 83327115 L1PA7 6471 + 4 6450 4986 25 1 3 309 1 0 69 17 5 385 1 0 304 26 193 6 0 7 52 10 11 20 0 3 34 26 28 133 0 1 176 2 6 260 8 9 536 17 20 33 0 2 66 0 1 124 0 3 251 1 0 4 4 5 12 1 5 25 1 0 104 0 28 83 4 5 40 0 1 112 1 0 273 7 10 43 3 0 180 3 0 178 0 1 69 0 1 34 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145138636 + 83967386 83969078 L1PA7 6471 + 4528 6232 13449 169 0 3 914 0 3 79 0 2 5 3 0 104 1 4 231 0 2 92 7 8 53 9 10 25 chain 62794 chr8 145138636 + 84050312 84050994 L1PA2 6032 + 4952 5634 25682 682 chain 22158 chr8 145138636 + 84057324 84057719 THE1B 368 + 0 368 53625 64 41 6 38 4 2 54 5 4 30 35 46 124 chain 4580 chr8 145138636 + 84119634 84119693 MER41A 554 + 399 465 87911 31 0 1 22 0 6 6 chain 23997 chr8 145138636 + 84119868 84120151 AluSp 311 + 16 303 50795 75 0 4 208 chain 25001 chr8 145138636 + 84146209 84146539 L1PA8 5853 + 5494 5852 49277 70 1 0 44 2 0 58 0 33 46 1 0 15 1 0 92 chain 5083 chr8 145138636 + 84232466 84232607 L1MA8 2339 + 2135 2264 85232 29 11 8 29 6 0 17 27 25 14 1 0 7 chain 40447 chr8 145138636 + 84292430 84292920 MER41A 554 + 7 496 34351 152 1 0 337 chain 28066 chr8 145138636 + 84401355 84401667 AluYk4 311 + 0 311 44769 92 1 0 219 chain 64131 chr8 145138636 + 84404860 84405649 L1P3 4156 + 2950 3745 25387 429 0 5 115 0 1 245 chain 2927 chr8 145138636 + 84411599 84411635 MIRb 242 + 162 198 100613 36 chain 6286 chr8 145138636 + 84435984 84436085 L1PB1 5432 + 5328 5423 80049 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 19 chain 32153 chr8 145138636 + 84524149 84524498 L1PA2 6032 + 5067 5416 40227 349 chain 4107 chr8 145138636 + 84543418 84543490 L1PB1 5432 + 5360 5427 90722 10 1 0 22 2 1 11 1 0 18 2 0 5 chain 4806 chr8 145138636 + 84597730 84597857 MER58B 340 + 149 277 86673 50 57 58 20 chain 84970 chr8 145138636 + 84650296 84651231 L1PA3long 6157 + 5221 6157 20625 602 0 1 333 chain 115763 chr8 145138636 + 84729375 84730654 L1PA3long 6157 + 2985 4264 16278 1279 chain 470675 chr8 145138636 + 84838985 84844310 L1PA4 6152 + 3 5332 3837 1241 1 0 199 0 2 1519 1 2 941 5 6 152 0 1 1266 chain 181901 chr8 145138636 + 84940653 84943309 MER57-int 2662 + 40 2662 10501 30 48 29 9 1 0 35 0 2 43 11 16 109 2 0 55 0 1 106 0 1 271 5 13 57 2 0 32 8 10 139 2 0 40 0 1 16 1 0 41 6 2 110 0 1 196 1 0 35 8 7 83 5 16 118 3 0 190 0 8 32 0 1 14 25 22 396 11 8 89 18 12 61 31 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10 5 1 10 3 1 49 3 2 15 1 0 44 1 0 16 14 1 27 10 7 15 2 0 24 1 0 21 1 0 13 1 0 18 1 0 5 chain 276498 chr8 145138636 + 85012241 85015289 L1PA3long 6157 + 3051 6099 7537 3048 chain 29005 chr8 145138636 + 85033689 85034042 L1PA7 6471 + 6116 6468 43311 215 0 1 129 2 0 7 chain 190490 chr8 145138636 + 85051897 85054199 L1PA7 6471 + 4140 6470 10090 79 0 22 302 0 7 858 0 1 209 2 0 6 0 1 83 1 2 742 1 0 14 1 0 4 chain 30131 chr8 145138636 + 85062830 85063222 LTR7 482 + 0 465 41908 69 8 46 109 0 1 40 0 31 9 0 3 157 chain 287870 chr8 145138636 + 85063240 85066966 HERVH-int 3825 + 0 3825 7204 333 1 0 197 6 1 39 2 1 9 65 0 24 70 0 15 1 0 11 4 1 25 1 0 41 1 0 59 0 1 6 0 2 13 0 1 650 9 0 4 1 0 37 2 1 105 6 0 203 0 1 285 2 1 20 8 13 82 0 1 563 8 6 319 9 11 39 0 210 77 27 28 172 0 43 175 chain 23028 chr8 145138636 + 85087669 85088020 THE1B 368 + 0 366 52314 43 2 17 59 0 5 6 9 4 65 0 2 62 14 15 12 3 0 76 chain 41156 chr8 145138636 + 85089161 85089702 MER41A 554 + 0 554 33871 408 9 13 14 0 3 25 4 9 61 1 2 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chain 3366 chr8 145138636 + 85276543 85276584 LTR12C 1709 + 818 858 42353 19 1 0 21 chain 6593 chr8 145138636 + 85340776 85340856 Tigger1 2417 + 2096 2176 78999 80 chain 36909 chr8 145138636 + 85416197 85416725 L1PB3 3668 + 2838 3375 36804 99 4 13 34 15 14 151 15 17 124 1 0 85 chain 43948 chr8 145138636 + 85431388 85431915 MER41A 554 + 0 528 32163 93 0 1 434 chain 13629 chr8 145138636 + 85433648 85433860 L1PA8 5853 + 5645 5853 64120 33 29 27 35 2 1 19 1 0 93 chain 29955 chr8 145138636 + 85489921 85490343 LTR7B 505 + 0 495 42096 108 0 10 57 0 38 12 3 27 26 0 2 82 1 0 24 0 1 54 14 13 41 chain 17078 chr8 145138636 + 85497925 85498394 L1PB1 5432 + 5028 5414 59725 70 61 10 9 4 1 17 1 0 11 1 0 10 2 0 3 2 0 9 5 3 51 14 14 34 59 46 11 7 4 13 2 0 28 1 0 19 1 0 13 1 0 10 chain 26697 chr8 145138636 + 85580981 85581311 L1P2 5180 + 835 1171 46687 303 5 11 22 chain 66358 chr8 145138636 + 85619995 85620755 L1PA5 6144 + 5386 6144 24856 746 3 1 11 chain 49249 chr8 145138636 + 85639215 85639824 L1PA6 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1562 + 1186 1524 56570 157 9 10 68 1 0 8 69 41 42 1 0 12 chain 61282 chr8 145138636 + 86315334 86316197 L1PREC2 3366 + 836 1684 26037 74 2 1 93 0 3 165 30 13 78 0 1 46 1 0 94 1 2 162 13 12 104 chain 22437 chr8 145138636 + 86323421 86323697 L1PA7 6471 + 6189 6458 53221 162 8 0 88 0 1 18 chain 9157 chr8 145138636 + 86427283 86427396 L1PA8 5853 + 5741 5853 72217 19 1 0 93 chain 17353 chr8 145138636 + 86570977 86571219 THE1B 368 + 119 368 59412 53 2 1 133 12 20 42 chain 36667 chr8 145138636 + 86596746 86597177 L1PA6 6164 + 5725 6160 36972 283 0 1 50 0 3 98 chain 88479 chr8 145138636 + 86599053 86600126 MER11B 1079 + 0 1064 19949 264 3 0 51 0 1 279 1 0 177 6 0 292 chain 89783 chr8 145138636 + 86608030 86609038 LTR13 1007 + 0 1007 19721 304 1 0 703 chain 27151 chr8 145138636 + 86650587 86651117 L1PB3 3668 + 3114 3620 46041 38 10 12 6 0 1 43 0 1 7 11 10 52 7 6 101 1 0 84 47 33 20 3 1 37 7 3 12 5 4 10 7 4 14 1 0 7 chain 39431 chr8 145138636 + 86665157 86665728 L1PA16 3655 + 2983 3578 35055 120 1 0 98 1 0 90 2 0 44 29 28 33 4 27 103 0 6 46 chain 21128 chr8 145138636 + 86668241 86668484 L1PA7 6471 + 6215 6458 54976 243 chain 5253 chr8 145138636 + 86679830 86680047 MLT1B 390 + 151 343 84428 17 137 112 63 chain 120048 chr8 145138636 + 86779847 86781400 THE1B-int 1605 + 13 1605 15533 415 26 53 288 1 0 7 0 1 244 1 12 112 11 12 448 chain 20364 chr8 145138636 + 86796182 86796492 L1PA14 3548 + 3171 3465 55933 50 1 0 111 1 0 10 5 1 36 4 2 12 1 0 5 1 0 57 6 0 10 chain 217385 chr8 145138636 + 86805280 86807684 L1PA3long 6157 + 3711 6157 9111 235 0 1 697 0 5 1386 0 36 86 chain 28157 chr8 145138636 + 86883869 86884180 AluYa5 310 + 0 310 44622 123 1 0 187 chain 72393 chr8 145138636 + 86960037 86960954 L1PA5 6144 + 19 950 23454 104 1 15 671 17 0 9 0 17 115 chain 58189 chr8 145138636 + 87012275 87013032 MER4E 760 + 0 760 26908 23 0 1 146 1 0 10 0 1 82 1 2 7 1 0 97 1 3 60 1 0 174 0 1 153 chain 52686 chr8 145138636 + 87020507 87021266 MER4E 760 + 0 760 28670 24 1 0 148 2 0 103 4 0 11 1 5 28 30 31 11 3 5 18 5 4 46 1 0 98 4 3 71 0 1 12 0 1 115 0 2 23 chain 16407 chr8 145138636 + 87025097 87025899 LTR12_ 688 + 94 688 60510 44 557 216 31 4 1 51 1 137 114 chain 2931 chr8 145138636 + 87025603 87025668 LTR12_ 688 + 362 530 100577 18 17 120 30 chain 57450 chr8 145138636 + 87083002 87084079 MER4E1 777 + 5 770 27115 18 1 0 482 0 1 5 6 5 19 28 34 9 317 0 192 chain 49298 chr8 145138636 + 87275484 87276025 L1PA3long 6157 + 3906 4451 29834 451 0 4 90 chain 23906 chr8 145138636 + 87300887 87301581 L1PB1 5432 + 2498 3198 9475 12 0 4 223 2 1 148 0 3 309 chain 5049 chr8 145138636 + 87301582 87301636 L1PB 1623 + 738 792 85418 54 chain 209870 chr8 145138636 + 87301640 87304012 L1PA4 6152 + 3137 5516 9352 113 0 3 778 0 3 1118 0 1 148 2 1 57 7 8 149 chain 77056 chr8 145138636 + 87304654 87306891 L1PB1 5432 + 3206 5413 9475 263 0 4 136 1 3 123 0 1 172 0 1 127 0 1 184 0 1 586 1 0 13 13 20 254 30 14 5 1 0 19 1 0 12 18 13 11 2 0 34 0 1 16 2 1 11 13 12 36 1 0 14 2 1 5 1 0 13 51 37 20 1 0 21 1 0 13 1 0 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145138636 + 87636246 87636722 LTR10F 562 + 0 562 36844 124 4 88 20 0 3 263 1 2 5 2 0 57 chain 419023 chr8 145138636 + 87648620 87653388 L1PA4 6152 + 601 5345 4893 135 1 0 195 4 0 124 0 7 149 4 5 460 27 0 1495 1 0 769 0 1 407 0 4 926 4 0 67 chain 69979 chr8 145138636 + 87685460 87686457 MER11A 1151 + 0 1151 23999 85 0 91 54 1 0 64 4 0 149 0 1 94 0 1 37 0 25 67 11 12 111 19 45 26 16 21 33 12 21 30 1 0 16 0 1 167 chain 43798 chr8 145138636 + 87742511 87743003 L1PA5 6144 + 5635 6127 32256 492 chain 55029 chr8 145138636 + 87790176 87790826 L1PA7 6471 + 5812 6462 27867 324 0 1 315 1 0 10 chain 513397 chr8 145138636 + 87793144 87799382 L1PA6 6164 + 0 6160 2605 517 0 2 48 1 0 336 0 4 520 1 4 15 1 0 80 0 1 77 0 1 384 5 5 184 1 0 572 10 21 528 3 1 87 0 1 309 92 0 1175 0 1 1109 4 0 28 8 7 71 0 2 64 2 0 6 chain 4108 chr8 145138636 + 87796828 87796873 L1PA6 6164 + 3703 3748 90713 45 chain 7028 chr8 145138636 + 87803048 87803153 Tigger3a 397 + 148 261 77508 11 1 11 53 2 0 38 chain 53771 chr8 145138636 + 87807328 87808110 L1PB2 3958 + 3070 3837 28294 84 0 1 45 8 12 23 0 1 73 2 0 52 1 0 13 5 0 65 2 0 12 5 0 94 15 14 58 1 0 64 2 1 72 2 0 21 1 0 62 chain 86817 chr8 145138636 + 87820652 87821849 LTR12E 1234 + 0 1234 20256 22 9 0 668 41 0 79 50 0 65 15 26 184 3 129 61 chain 22365 chr8 145138636 + 87874349 87874612 AluSx4 309 + 29 292 53321 263 chain 34851 chr8 145138636 + 87908647 87909347 MER4D1 891 + 0 701 38125 23 3 4 23 7 8 18 0 1 35 10 9 21 20 18 47 4 7 80 0 1 68 1 4 40 140 141 119 7 0 34 chain 9737 chr8 145138636 + 87927192 87927368 L1MA3 4352 + 4134 4311 70963 30 0 1 53 2 6 35 11 9 14 15 13 16 chain 44797 chr8 145138636 + 87937176 87937847 MER50 708 + 0 699 31704 48 22 26 50 8 39 80 16 5 39 12 15 190 16 17 190 chain 103197 chr8 145138636 + 87970972 87972345 LTR12C 1709 + 0 1709 17932 112 1 7 64 0 1 93 15 3 11 0 1 46 0 43 217 13 14 56 4 297 147 1 0 4 4 2 33 0 1 68 1 0 4 11 4 57 0 1 18 5 7 30 0 7 273 12 11 46 0 4 27 chain 54813 chr8 145138636 + 88062210 88062814 L1PA5 6144 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145138636 + 88574093 88580216 L1PA4 6152 + 6 6140 1660 224 0 1 1228 1 2 509 3 11 48 0 1 170 0 2 118 1 0 100 0 3 747 0 1 1493 0 1 575 0 1 60 8 1 838 chain 8551 chr8 145138636 + 88636370 88636544 MLT1B 390 + 218 390 73559 27 2 0 17 0 1 4 47 46 77 chain 564565 chr8 145138636 + 88685705 88691738 L1HS 6032 + 0 6032 103 6024 1 0 8 chain 2297 chr8 145138636 + 88732442 88732511 MLT1A 405 + 268 339 104736 13 18 19 13 5 6 20 chain 4202 chr8 145138636 + 88739302 88739355 MER53 195 - 12 65 90109 53 chain 443523 chr8 145138636 + 88769860 88775443 HERVL-int 5654 + 0 5654 4505 451 0 1 65 9 19 139 0 1 59 0 4 94 0 1 204 8 38 33 1 2 69 11 39 651 8 0 79 2 4 128 1 2 59 0 2 40 4 5 400 0 1 810 0 2 379 0 1 184 0 2 132 1 2 114 0 1 566 4 2 126 0 1 6 0 1 306 12 0 98 0 1 330 chain 26501 chr8 145138636 + 88775443 88775873 MLT2A1 477 + 0 396 46978 141 74 47 40 8 0 156 0 1 11 chain 95532 chr8 145138636 + 88826966 88828015 L1PA3long 6157 + 4224 5273 18837 1049 chain 180030 chr8 145138636 + 88847941 88850155 L1PA7 6471 + 4217 6456 10587 310 0 1 137 0 4 143 0 3 45 8 14 64 4 9 114 0 1 118 0 1 433 0 3 518 1 0 173 1 3 145 chain 297960 chr8 145138636 + 88898253 88903055 L1PA6 6164 + 2331 6162 6888 51 0 31 20 0 2 15 5 3 306 1024 0 430 0 1 48 0 4 456 1 0 307 0 3 37 0 4 79 0 2 216 2 0 5 1 6 5 3 0 48 0 2 272 3 12 96 20 13 85 8 9 347 7 8 59 1 2 53 0 1 97 5 5 154 0 5 526 4 0 6 chain 137115 chr8 145138636 + 88930078 88931750 L1PA7 6471 + 4570 6246 13329 55 1 0 408 0 1 585 8 12 615 chain 236044 chr8 145138636 + 88974225 88977137 L1PA7 6471 + 3520 6467 8570 774 0 9 220 0 4 418 8 4 22 0 2 260 0 15 29 1 0 4 0 1 342 3 0 175 1 0 60 0 3 371 0 4 71 10 16 143 chain 36807 chr8 145138636 + 89006920 89007438 MLT2A2 560 + 0 560 36878 84 0 11 74 13 29 103 17 19 88 0 11 70 0 2 69 chain 14946 chr8 145138636 + 89008950 89009287 L1PB1 5432 + 5103 5413 62324 13 4 8 14 1 0 9 16 11 9 2 0 53 3 2 15 1 0 44 1 0 15 3 0 7 14 5 18 12 9 11 2 0 18 7 6 21 1 0 13 1 0 9 chain 93653 chr8 145138636 + 89030178 89031212 L1PA3long 6157 + 5116 6150 19087 1034 chain 63359 chr8 145138636 + 89042983 89044048 MER11B 1079 + 0 1051 25551 200 3 5 252 18 17 22 41 30 10 8 8 29 9 10 55 6 0 7 104 99 14 39 43 24 0 1 53 0 1 171 chain 108683 chr8 145138636 + 89088686 89089881 L1PA3long 6157 + 4962 6157 17219 1195 chain 87686 chr8 145138636 + 89151768 89152987 L1PA8 5853 + 4669 5847 20101 70 1 0 79 5 6 182 12 6 167 1 3 159 0 1 180 0 1 39 1 0 27 44 1 18 14 0 76 15 18 33 1 18 7 1 0 87 chain 313425 chr8 145138636 + 89155274 89158738 L1PA3long 6157 + 2675 6142 6549 1109 0 1 1347 0 2 1008 chain 459800 chr8 145138636 + 89162874 89168211 L1PA4 6152 + 3 6138 4131 300 10 11 1366 1 0 521 0 2 1512 0 792 797 0 4 590 1 0 122 1 2 116 chain 9648 chr8 145138636 + 89180086 89180345 L1MA8 2339 + 2026 2264 71168 53 23 21 17 26 10 27 3 8 19 0 1 8 26 20 23 2 0 23 1 0 8 chain 131618 chr8 145138636 + 89190964 89192414 L1PA3long 6157 + 4557 6007 13860 1450 chain 12389 chr8 145138636 + 89192423 89192565 L1PA3long 6157 + 6011 6153 66155 142 chain 73902 chr8 145138636 + 89210574 89211644 MER11A 1151 + 0 1146 23120 55 0 99 24 8 0 52 0 4 57 7 3 134 15 16 19 0 1 74 0 1 111 0 13 21 0 1 125 0 26 26 43 0 24 22 5 29 0 1 60 6 7 158 chain 543816 chr8 145138636 + 89218189 89224363 L1PA3long 6157 + 6 6157 1093 1310 0 1 129 1 0 243 1 0 342 1 0 4 0 1 114 46 0 175 0 1 2464 0 23 498 1 4 69 2 0 506 2 1 108 1 0 8 0 1 149 chain 48129 chr8 145138636 + 89237564 89238245 LTR30 714 + 0 704 30248 224 0 8 21 0 5 176 16 27 163 1 0 5 33 34 29 1 0 12 chain 3963 chr8 145138636 + 89299528 89299575 Tigger3b 1229 + 38 85 91678 47 chain 6418 chr8 145138636 + 89329221 89329294 L1MA5A 2387 + 2230 2302 79611 65 1 0 7 chain 32832 chr8 145138636 + 89330351 89330745 L1PA7 6471 + 6069 6470 39643 157 0 10 72 2 0 103 1 0 59 chain 527404 chr8 145138636 + 89373916 89380062 L1PA4 6152 + 0 6138 1936 353 4 5 460 0 17 5 17 0 876 1 0 292 2 3 150 0 1 483 1 0 1266 0 1 28 0 1 575 6 0 119 1 0 60 0 2 20 4 0 265 0 1 50 1 2 231 0 1 115 1 0 704 5 1 51 chain 211501 chr8 145138636 + 89389761 89392089 L1PA2 6032 + 3698 6026 9303 2168 5 0 7 1 6 147 chain 10560 chr8 145138636 + 89395415 89395646 MER30 238 + 0 223 69302 14 36 44 12 1 2 27 21 9 13 2 0 70 3 0 32 chain 28480 chr8 145138636 + 89403371 89403724 THE1A 353 + 0 353 44156 50 0 1 58 2 1 243 chain 15312 chr8 145138636 + 89408279 89408536 HERV35I-int 1679 + 1325 1571 61898 71 2 1 63 26 23 71 7 0 17 chain 16072 chr8 145138636 + 89411133 89411404 L1MA5A 2387 + 2067 2299 60930 6 5 0 34 1 0 51 2 0 29 1 0 28 1 0 15 28 0 65 1 0 4 chain 251777 chr8 145138636 + 89427459 89430816 L1PA7 6471 + 3416 6461 8182 287 0 1 131 0 1 99 327 0 21 1 0 38 0 1 406 0 1 219 1 0 47 0 4 412 6 0 33 0 4 500 3 13 106 0 1 281 2 1 305 0 1 132 chain 16914 chr8 145138636 + 89445574 89445767 L1PA3long 6157 + 3695 3888 59896 4 1 0 176 0 1 12 chain 444952 chr8 145138636 + 89449230 89454821 HERVL-int 5654 + 0 5654 4474 90 18 21 15 0 4 286 1 3 67 0 15 454 0 2 546 4 0 191 0 1 33 6 7 145 1 8 193 0 9 243 0 1 399 0 1 33 10 0 461 43 43 858 0 2 232 0 4 74 0 9 47 13 12 393 0 3 453 4 4 16 0 2 48 0 9 140 0 3 74 chain 350481 chr8 145138636 + 89457544 89461635 L1P1 4361 + 4 4106 5903 718 0 3 142 0 2 145 1 0 509 1 0 4 0 1 503 6 20 106 0 1 667 8 0 1281 chain 24663 chr8 145138636 + 89485876 89486250 THE1C 375 + 0 375 49783 70 11 0 9 8 22 79 0 1 4 14 12 152 1 0 26 chain 17731 chr8 145138636 + 89501132 89501339 L1PA5 6144 + 5933 6140 58974 207 chain 22405 chr8 145138636 + 89502897 89503252 THE1B 368 + 0 368 53265 102 1 2 65 1 0 32 40 43 27 5 15 82 chain 188556 chr8 145138636 + 89511618 89513733 L1HS 6032 + 1170 3285 10188 2115 chain 11115 chr8 145138636 + 89526155 89526392 MER30 238 + 0 235 68389 15 31 32 53 37 35 68 6 5 27 chain 4195 chr8 145138636 + 89533178 89533225 MLT1E2 623 + 386 433 90164 47 chain 547304 chr8 145138636 + 89535240 89541269 L1PA2 6032 + 11 6031 904 246 1 0 226 1 0 429 1 0 2139 4 1 1177 0 4 438 4 0 1019 3 0 341 chain 233595 chr8 145138636 + 89597857 89600422 L1PA3long 6157 + 2420 4985 8646 2565 chain 5246 chr8 145138636 + 89643459 89643523 L1MA5 2750 + 544 608 84468 64 chain 3833 chr8 145138636 + 89658349 89658396 L1MA5A 2387 + 2248 2295 92618 47 chain 3520 chr8 145138636 + 89660881 89660918 L1PA4 6152 + 5902 5939 95100 37 chain 18820 chr8 145138636 + 89660919 89661132 L1PA4 6152 + 5939 6152 57751 213 chain 381474 chr8 145138636 + 89673074 89677474 L1PA5 6144 + 931 5344 5460 82 1 0 798 0 1 382 0 2 229 15 16 260 0 1 240 0 2 822 4 5 478 0 1 1044 0 5 45 chain 325146 chr8 145138636 + 89679340 89683935 L1PA11 4918 + 8 4578 6306 26 10 8 36 2 0 6 3 2 16 14 13 13 2 0 53 16 15 16 2 0 6 2 1 255 1 0 401 0 3 344 0 3 131 49 1 91 12 6 60 0 5 10 35 0 66 0 1 216 1 2 111 0 80 90 0 5 89 3 5 142 1 0 119 1 0 92 6 1 124 0 3 7 3 0 36 1 0 217 0 1 14 8 9 208 0 1 17 1 0 10 3 4 255 5 6 59 0 2 128 3 4 204 0 4 82 9 0 7 0 9 309 0 1 59 5 0 65 2 1 13 2 0 67 2 0 13 2 1 12 52 39 15 1 0 13 2 0 11 chain 27155 chr8 145138636 + 89684774 89685183 MER4A 717 + 268 703 46033 63 5 22 35 1 18 17 20 17 54 6 1 208 chain 157469 chr8 145138636 + 89698200 89700147 SVA_D 2077 + 60 2077 11917 44 0 27 335 0 76 145 0 40 181 2 0 8 3 1 11 1 39 63 1 0 6 42 16 40 0 1 118 48 0 173 1 0 4 24 0 13 4 0 43 1 0 185 1 0 7 1 0 423 1 0 18 chain 2956 chr8 145138636 + 89699000 89699042 SVA_D 2077 + 1137 1179 33296 42 chain 3378 chr8 145138636 + 89699200 89699248 SVA_D 2077 + 1338 1387 33296 8 0 1 40 chain 454985 chr8 145138636 + 89708196 89713381 L1PA4 6152 + 13 5192 4260 1392 4 0 1889 4 0 213 0 1 1421 0 1 262 chain 37160 chr8 145138636 + 89736312 89736811 LTR6B 557 + 0 547 36637 22 7 35 15 0 15 314 2 0 27 3 7 58 0 1 6 0 1 33 0 1 12 chain 388204 chr8 145138636 + 89737250 89742956 L1PB1 5432 + 30 5387 5347 18 14 11 19 1 14 241 0 2 216 0 1 197 7 6 10 0 1 286 3 4 78 0 10 41 1 0 4 0 1 88 8 7 107 26 10 114 17 19 427 7 6 77 12 0 11 12 24 93 1 0 322 5 0 82 0 5 155 3 1 104 2 0 49 0 3 257 4 12 96 5 6 333 0 5 129 1 0 478 325 0 221 5 6 145 0 1 42 16 1 419 0 1 6 2 1 50 3 2 11 0 1 19 30 22 11 12 10 41 2 1 16 1 0 44 1 0 15 1 0 4 6 4 7 8 0 12 32 27 20 1 0 17 chain 27925 chr8 145138636 + 89748267 89748568 AluYb8 318 + 0 313 44992 136 0 12 165 chain 15418 chr8 145138636 + 89785454 89785675 Tigger4b 360 + 142 360 61762 22 1 0 139 13 11 46 chain 4674 chr8 145138636 + 89799056 89799117 MLT1C 463 + 342 403 87414 61 chain 16115 chr8 145138636 + 89799436 89799642 LTR24B 570 + 110 315 60878 75 1 0 130 chain 41551 chr8 145138636 + 89805170 89805694 MER41A 554 + 13 554 33652 185 0 2 114 0 1 47 0 13 38 0 1 140 chain 5765 chr8 145138636 + 89865835 89865902 MER34 540 + 419 486 82059 67 chain 15147 chr8 145138636 + 89923528 89923742 MER47A 366 + 109 322 62103 157 15 14 42 chain 432436 chr8 145138636 + 90045265 90050381 L1PA5 6144 + 216 5341 4711 309 4 0 640 16 7 72 0 1 260 0 3 191 0 1 92 0 2 139 0 2 378 2 1 881 2 1 473 4 1 349 2 14 293 0 1 209 0 1 98 1 0 133 0 1 502 1 5 65 chain 4777 chr8 145138636 + 90178061 90178130 MER63B 433 + 335 400 86819 58 4 0 7 chain 478030 chr8 145138636 + 90203339 90210308 L1PA7 6471 + 460 6456 3674 137 0 13 79 30 28 113 0 1 4 1 0 400 11 15 162 0 14 205 1 0 161 0 1 492 0 1 348 1 2 31 1041 8 18 0 3 671 0 1 18 0 4 94 6 4 17 0 4 40 0 4 283 1 0 148 0 1 15 11 7 1028 11 22 92 3 7 286 1 2 177 2 1 11 0 1 69 0 1 81 0 1 354 0 2 159 2 0 7 14 15 133 chain 30077 chr8 145138636 + 90206117 90206546 LTR10F 562 + 0 513 41981 107 0 56 46 1 32 15 7 0 10 9 15 148 2 0 6 0 2 38 2 0 38 chain 3848 chr8 145138636 + 90254374 90254416 L1MEf 1413 + 765 807 92514 42 chain 101501 chr8 145138636 + 90258763 90260192 L1PA13 3608 + 2153 3548 18126 265 4 0 53 0 1 200 4 0 17 0 2 283 20 21 137 1 0 27 2 1 114 2 0 61 4 3 58 2 0 48 2 0 4 2 0 20 2 1 18 0 3 7 18 7 12 17 10 9 4 1 12 chain 478572 chr8 145138636 + 90264106 90269618 L1PA4 6152 + 2 5518 3665 437 1 0 396 8 1 590 1 0 25 0 4 367 0 1 474 4 5 922 0 1 69 0 1 643 0 1 1359 0 4 216 chain 4503 chr8 145138636 + 90274418 90274469 THE1B 368 + 317 368 88307 51 chain 25062 chr8 145138636 + 90276043 90276396 THE1B 368 + 0 368 49182 169 1 0 28 32 46 55 1 3 67 chain 3211 chr8 145138636 + 90279433 90279467 LTR34 700 - 215 249 97787 34 chain 259975 chr8 145138636 + 90333247 90336279 L1P1 4361 + 1 3103 7971 1224 4 70 631 1 0 305 0 1 549 3 7 315 chain 25723 chr8 145138636 + 90339856 90340177 THE1A 353 + 0 321 48136 109 2 1 69 0 1 141 chain 124179 chr8 145138636 + 90340210 90341749 THE1A-int 1579 + 13 1568 14817 11 0 1 88 0 1 766 0 3 261 1 9 86 0 2 133 1 2 192 chain 495783 chr8 145138636 + 90375820 90381589 L1PA5 6144 + 378 6143 3275 434 0 1 250 10 8 5 0 2 59 0 1 795 0 2 73 10 0 362 1 3 425 2 3 365 3 4 79 0 3 10 0 1 335 0 1 1136 0 3 54 1 2 589 1 0 507 0 1 77 16 5 170 chain 331392 chr8 145138636 + 90388875 90392908 L1PA7 6471 + 2437 6470 6194 196 11 0 39 1 0 217 0 4 203 0 4 160 0 1 236 1 0 221 1 0 100 0 1 792 4 0 343 0 3 413 0 1 157 2 1 92 7 6 71 0 2 287 0 3 313 5 13 7 8 0 115 2 3 29 chain 168506 chr8 145138636 + 90483698 90485947 L1PB1 5432 + 1167 3421 11186 60 0 2 158 10 14 38 9 6 173 7 8 291 2 0 8 0 1 4 1 0 188 0 2 191 0 1 27 7 5 153 1 0 27 1 0 94 6 7 217 1 0 332 0 4 243 chain 6309 chr8 145138636 + 90511167 90511241 5S 121 + 46 120 79964 74 chain 38986 chr8 145138636 + 90512846 90513378 L1PA11 4918 + 3966 4508 35363 351 1 0 5 15 29 44 1 0 9 2 0 54 0 3 11 2 0 16 1 0 20 chain 9751 chr8 145138636 + 90682825 90682950 MER61-int 3695 + 729 903 70931 90 0 49 35 chain 2021 chr8 145138636 + 90683912 90684027 LTR5_Hs 974 + 0 115 53758 115 chain 76348 chr8 145138636 + 90684031 90684999 LTR5_Hs 974 + 0 974 22478 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 2829 chr8 145138636 + 90685006 90685167 LTR5_Hs 974 + 128 289 53758 161 chain 32293 chr8 145138636 + 90685167 90685532 LTR5_Hs 974 + 290 656 40118 177 0 1 188 chain 11315 chr8 145138636 + 90685533 90685696 LTR5_Hs 974 + 656 819 68061 163 chain 8831 chr8 145138636 + 90685742 90685846 LTR5_Hs 974 + 870 974 72915 104 chain 43950 chr8 145138636 + 90717147 90717660 MER9a2 513 + 0 513 32161 513 chain 94476 chr8 145138636 + 90718331 90719512 L1PA8 5853 + 4680 5853 18967 326 2 0 12 1 0 110 1 2 45 1 0 179 1 2 201 6 5 47 2 0 8 0 1 61 1 0 13 1 0 52 1 0 16 2 1 92 chain 39912 chr8 145138636 + 90752421 90752857 L1PA4 6152 + 5715 6151 34728 436 chain 52604 chr8 145138636 + 90772581 90773181 L1PA5 6144 + 5543 6144 28701 137 0 1 463 chain 7345 chr8 145138636 + 90783168 90783267 MLT1B 390 + 276 374 76531 22 1 0 76 chain 19697 chr8 145138636 + 90881398 90881773 MSTA 426 + 3 408 56789 14 0 1 79 37 57 38 9 6 5 1 0 8 2 8 19 14 13 42 6 0 9 2 16 90 chain 27138 chr8 145138636 + 90896650 90897074 LTR10F 562 + 37 513 46066 79 0 28 53 28 0 32 0 24 13 5 11 158 11 31 5 2 0 25 0 4 13 chain 49169 chr8 145138636 + 90932930 90933724 L1PB1 5432 + 4667 5427 29878 36 0 1 300 0 1 68 4 0 6 0 4 15 18 16 24 1 0 9 1 0 9 7 3 9 2 0 48 10 9 11 1 0 41 7 6 13 25 12 19 7 4 15 2 0 24 1 0 21 10 9 4 1 0 18 2 0 5 chain 4791 chr8 145138636 + 91023874 91023955 MADE1 96 - 0 96 86743 33 15 30 33 chain 42606 chr8 145138636 + 91091376 91091905 MLT2A2 560 + 15 560 32998 263 13 18 106 0 11 147 chain 146767 chr8 145138636 + 91152828 91155197 L1PA8A 6298 + 2276 4652 12554 226 3 4 18 13 14 34 1 5 26 0 5 150 0 4 89 1 0 7 0 1 87 1 0 174 1 0 4 0 1 68 0 1 166 8 6 17 0 370 10 384 1 95 1 3 7 2 0 6 0 5 223 8 10 255 6 7 134 1 0 143 chain 71779 chr8 145138636 + 91170311 91171088 L1PA2 6032 + 4426 5205 23600 215 0 1 33 0 1 529 chain 86592 chr8 145138636 + 91306867 91307804 L1PA3long 6157 + 5215 6152 20302 937 chain 8618 chr8 145138636 + 91317456 91317580 MER85 139 + 4 139 73412 92 12 23 20 chain 68834 chr8 145138636 + 91357518 91358316 L1PA5 6144 + 4891 5690 24252 56 1 2 254 2 1 90 0 1 395 chain 4452 chr8 145138636 + 91425898 91425968 L1MB1 2102 + 1922 1991 88597 12 2 3 5 2 0 49 chain 48195 chr8 145138636 + 91521377 91521895 L1HS 6032 + 5513 6031 30219 518 chain 77628 chr8 145138636 + 91537360 91538314 L1PA8A 6298 + 5327 6291 22176 142 0 4 16 0 7 74 4 5 431 7 6 254 1 0 25 chain 557559 chr8 145138636 + 91558668 91564687 L1PA2 6032 + 12 6032 268 5886 0 1 133 chain 229248 chr8 145138636 + 91570578 91573404 L1PA7 6471 + 3607 6465 8767 229 1 0 13 1 2 195 1 2 4 1 0 821 0 1 69 0 3 32 2 1 5 0 1 214 0 1 42 1 16 215 0 5 144 7 9 580 8 15 233 2 0 6 chain 32463 chr8 145138636 + 91602295 91602727 MER57A1 433 + 0 433 39978 258 40 41 134 chain 153598 chr8 145138636 + 91649084 91650929 L1PA7 6471 + 4610 6465 12140 53 0 8 316 0 1 633 0 3 169 0 1 137 3 2 306 0 1 219 3 0 6 chain 2764 chr8 145138636 + 91659935 91659988 Charlie16a 284 + 132 181 101884 13 3 0 16 5 4 16 chain 29087 chr8 145138636 + 91688995 91689706 L1PB1 5432 + 4922 5430 43210 178 235 58 10 2 0 44 0 2 6 3 1 16 1 0 43 1 0 16 4 1 14 9 0 16 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 1 0 6 chain 252392 chr8 145138636 + 91727709 91737045 L1PA3long 6157 + 3237 6157 8172 1117 0 4 981 6420 0 818 chain 89919 chr8 145138636 + 91735202 91736202 L1PA3long 6157 + 4309 5310 19699 851 0 1 149 chain 6158 chr8 145138636 + 91755585 91755690 MER121 330 + 31 130 80506 38 1 0 10 13 8 43 chain 97114 chr8 145138636 + 91777110 91778200 L1P1 4361 + 2846 3933 18647 1082 3 0 5 chain 358572 chr8 145138636 + 91787809 91792125 L1P1 4361 + 5 4341 5814 1041 8 9 286 0 10 234 0 8 36 6 7 1540 1 2 932 0 2 38 1 0 155 1 0 23 2 1 12 chain 501164 chr8 145138636 + 91793553 91799154 L1PA3long 6157 + 0 5741 3096 152 0 1 623 0 128 692 0 1 256 0 5 2496 0 4 967 7 8 408 chain 124313 chr8 145138636 + 91816182 91817731 LTR12C 1709 + 0 1709 14799 145 0 1 177 13 56 85 6 5 181 0 119 68 1 0 275 13 10 102 0 4 330 1 0 63 5 4 84 chain 426646 chr8 145138636 + 91819068 91824633 L1PA8 5853 + 50 5850 4791 21 2 0 11 1 0 13 26 13 41 0 1 152 18 6 301 1 0 126 1 2 4 0 1 85 21 20 311 0 2 47 1 2 264 13 13 96 0 1 281 0 1 56 6 250 624 0 1 78 9 8 25 2 1 71 0 4 14 7 5 243 4 5 38 5 7 25 26 27 724 0 1 249 15 13 171 4 1 500 1 0 3 2 0 65 0 22 31 1 0 186 0 1 250 1 0 22 1 0 23 2 0 24 0 1 44 2 1 9 1 0 51 3 2 19 1 0 90 chain 21318 chr8 145138636 + 91850047 91850437 L1MA3 4352 + 3962 4323 54740 127 55 32 58 1 0 81 2 0 8 27 25 24 1 0 6 chain 4152 chr8 145138636 + 91850555 91850623 L1M3f 2199 + 2029 2096 90451 31 11 10 26 chain 544995 chr8 145138636 + 91869518 91875534 L1PA2 6032 + 6 6031 1031 68 0 1 180 1 0 459 0 1 2453 0 3 895 0 1 162 0 4 1798 chain 537188 chr8 145138636 + 91891362 91897361 L1PA3long 6157 + 0 6156 1500 52 0 11 89 0 1 290 0 1 111 1 8 134 0 7 72 0 128 647 0 1 1624 0 1 2979 chain 8639 chr8 145138636 + 91916232 91916341 Tigger3c 601 + 466 575 73377 109 chain 41028 chr8 145138636 + 91932609 91933314 L1PB1 5432 + 4754 5424 33953 20 1 0 60 6 7 121 3 0 140 6 1 14 6 3 18 3 2 6 1 0 10 6 2 9 2 0 53 2 1 16 1 0 44 1 0 15 1 0 5 21 10 16 8 5 16 0 6 16 1 0 21 1 0 13 1 0 16 1 0 4 chain 9997 chr8 145138636 + 91948320 91948427 LTR7Y 441 + 334 441 70432 107 chain 245818 chr8 145138636 + 91948427 91951506 HERVH-int 3825 + 0 3120 8331 159 1 7 323 2 0 11 98 31 39 2 1 9 1 0 24 6 56 37 1 0 4 21 0 54 0 1 7 0 2 13 0 3 689 0 35 180 3 31 299 0 10 231 4 3 861 chain 36414 chr8 145138636 + 91952261 91952724 LTR7Y 441 + 0 402 37131 165 62 0 232 0 1 4 chain 85360 chr8 145138636 + 92083212 92084243 L1PA7 6471 + 5422 6456 20555 199 0 3 61 30 28 599 0 2 142 chain 2947 chr8 145138636 + 92093555 92093586 U2 167 + 0 31 100387 31 chain 111138 chr8 145138636 + 92120493 92121822 L1PA7 6471 + 5136 6470 16923 264 10 11 211 0 2 106 1 0 235 0 1 31 0 1 283 0 1 188 chain 110171 chr8 145138636 + 92230611 92232281 LTR12C 1709 + 0 1709 17061 42 38 42 136 0 14 19 45 45 78 51 54 31 3 0 7 1 3 116 26 24 46 5 0 180 1 0 235 0 47 89 47 20 254 0 9 50 1 0 86 1 0 82 chain 43491 chr8 145138636 + 92236542 92237055 MER9a2 513 + 0 513 32458 513 chain 309524 chr8 145138636 + 92238384 92242199 HERVK9-int 4720 + 36 4714 6623 14 12 8 71 2 0 33 1 0 79 1 2 609 37 3 89 29 2 415 1 0 135 0 924 546 1 0 106 0 2 787 0 2 68 0 2 249 4 6 526 chain 44071 chr8 145138636 + 92242205 92242718 MER9a2 513 + 0 513 32101 513 chain 77304 chr8 145138636 + 92252806 92253708 L1PA5 6144 + 5238 6144 22249 695 0 1 56 4 0 9 0 7 138 chain 116183 chr8 145138636 + 92337165 92339252 L1PB2 3958 + 2113 3836 16191 166 24 26 177 3 0 10 11 5 39 0 1 209 1 0 178 1 0 26 0 1 342 0 3 13 15 13 39 1 0 15 4 0 39 0 2 5 2 0 13 5 3 14 4 0 7 354 9 12 7 8 53 15 16 60 1 0 59 4 3 55 1 2 5 1 0 11 2 0 22 12 12 50 chain 38680 chr8 145138636 + 92416492 92417037 MLT2A2 560 + 0 557 35580 180 1 0 61 0 1 150 39 51 114 chain 14642 chr8 145138636 + 92464136 92464418 L1PB1 5432 + 5144 5400 62745 12 2 0 3 2 0 9 12 10 42 2 1 15 1 0 44 1 0 12 16 5 27 2 0 8 1 0 14 2 0 47 1 0 7 chain 29740 chr8 145138636 + 92528289 92528645 L1PA7 6471 + 6111 6469 42320 20 0 1 130 0 1 206 chain 130206 chr8 145138636 + 92662142 92663818 L1PA5 6144 + 4490 6144 14013 6 4 0 132 117 92 135 0 3 433 0 4 849 chain 139017 chr8 145138636 + 92703909 92705436 L1PA4 6152 + 4625 6151 13188 124 1 0 1402 chain 23530 chr8 145138636 + 92710548 92710832 AluSc5 308 + 20 304 51539 284 chain 141898 chr8 145138636 + 92763372 92765116 L1PA7 6471 + 3626 5367 12948 210 1 0 502 0 1 7 5 6 209 0 1 385 8 0 43 9 10 237 0 2 128 chain 49069 chr8 145138636 + 92828894 92829496 PABL_A 660 + 6 653 29922 149 0 2 92 1 45 128 6 5 226 chain 73388 chr8 145138636 + 92913256 92914129 L1PA7 6471 + 5591 6470 23238 30 0 6 843 chain 51214 chr8 145138636 + 92971230 92971876 L1PA10 4194 + 3520 4161 29161 114 0 1 327 2 0 154 3 0 34 1 0 11 chain 81129 chr8 145138636 + 92990455 92991483 L1P3 4156 + 0 1027 21405 247 1 0 19 7 6 47 2 1 8 2 5 76 1 0 618 chain 12456 chr8 145138636 + 93002941 93003116 L1MA6 2487 + 157 335 66057 79 0 1 73 11 13 12 chain 31840 chr8 145138636 + 93007045 93007746 L1PA10 4194 + 175 799 40461 15 2 0 11 4 1 5 2 0 8 13 9 8 2 0 8 5 6 4 1 0 21 8 6 9 1 0 8 115 65 4 1 0 9 0 3 7 8 0 12 7 0 9 1 0 79 10 8 34 0 3 64 0 1 131 5 6 70 chain 10972 chr8 145138636 + 93009633 93009891 L1MA6 2487 + 2037 2276 68591 23 44 42 95 3 2 26 40 24 27 chain 145090 chr8 145138636 + 93038572 93040225 SVA_D 2077 + 12 2077 12681 12 1 7 27 23 0 502 0 40 317 0 391 80 0 1 49 3 0 639 chain 8965 chr8 145138636 + 93147221 93147351 L1P4 1494 + 92 220 72638 25 7 6 22 1 0 75 chain 22512 chr8 145138636 + 93162011 93162465 Tigger3 1187 + 270 737 53108 15 8 6 198 124 134 12 0 4 25 5 2 30 1 0 8 0 5 28 chain 4019 chr8 145138636 + 93186080 93186130 MER58A 224 + 149 199 91311 50 chain 20260 chr8 145138636 + 93207476 93207845 L1PA14 3548 + 3118 3465 56065 13 2 0 5 4 3 82 1 0 24 6 0 87 4 3 11 4 0 33 4 2 10 26 27 37 6 0 10 chain 10205 chr8 145138636 + 93223020 93223145 MER41B 635 + 510 635 70005 125 chain 4477 chr8 145138636 + 93243186 93243241 L1MB8 1703 + 1310 1365 88454 55 chain 18499 chr8 145138636 + 93345891 93346104 LTR12F 595 + 382 595 58105 213 chain 557668 chr8 145138636 + 93405812 93411825 L1PA2 6032 + 1 6019 261 608 0 1 2073 0 4 3332 chain 97962 chr8 145138636 + 93462086 93463236 L1PA7 6471 + 5128 6281 18532 221 1 0 272 0 3 182 0 1 474 chain 412196 chr8 145138636 + 93466325 93471332 L1P2 5180 + 4 5042 5001 130 14 0 16 2 1 96 6 5 160 21 13 83 1 0 7 1 0 272 1 0 5 1 0 141 0 25 131 15 16 179 3 0 1033 3 2 845 1 3 4 1 0 1473 0 5 190 0 28 23 0 1 52 0 2 97 chain 28845 chr8 145138636 + 93476093 93476482 MLT2A1 477 + 0 390 43561 165 8 5 11 6 7 16 0 1 178 0 2 5 chain 82941 chr8 145138636 + 93479746 93480697 L1PA5 6144 + 5194 6144 21033 100 1 0 89 1 0 153 0 1 607 chain 510023 chr8 145138636 + 93483262 93489206 L1PA5 6144 + 0 5963 2768 121 0 14 278 3 0 5 0 3 65 1 2 655 0 9 12 14 5 397 0 1 747 0 1 824 0 1 30 1 0 502 0 1 74 1 0 1474 9 10 305 0 1 426 chain 24851 chr8 145138636 + 93511788 93512168 L1PA8 5853 + 4807 5154 49517 75 32 1 41 1 0 4 0 1 81 1 0 5 4 3 80 3 0 5 0 3 48 chain 62005 chr8 145138636 + 93520041 93520768 L1PA7 6471 + 5742 6465 25866 485 1 0 232 3 0 6 chain 132568 chr8 145138636 + 93547296 93549100 L1PA11 4918 + 2774 4578 13773 143 2 1 743 4 0 190 8 39 191 7 6 168 1 5 30 1 0 41 4 5 52 7 6 12 3 0 68 2 0 14 1 0 10 0 1 9 4 0 9 3 0 5 31 17 28 2 0 11 chain 45290 chr8 145138636 + 93610992 93611533 L1PA7 6471 + 5930 6470 31425 113 2 4 180 1 0 88 2 0 155 chain 4970 chr8 145138636 + 93614173 93614231 MER58A 224 + 166 224 85806 58 chain 47844 chr8 145138636 + 93637262 93637823 L1PA7 6471 + 5865 6437 30344 63 0 1 208 1 0 49 0 4 159 0 7 81 chain 198119 chr8 145138636 + 93667615 93669774 L1PA3long 6157 + 3997 6157 9771 2010 0 1 149 chain 11902 chr8 145138636 + 93670715 93671056 MSTA 426 + 0 375 67001 27 4 31 9 0 1 55 29 33 7 4 0 21 1 0 14 87 86 16 0 5 6 11 14 50 chain 5198 chr8 145138636 + 93742250 93742315 MIR 256 + 104 169 84680 65 chain 31003 chr8 145138636 + 93835592 93836074 LTR64 526 + 0 503 41118 84 6 7 49 1 0 52 0 1 185 54 74 51 chain 22393 chr8 145138636 + 93851042 93851365 L1MA8 2339 + 557 873 53285 21 8 5 202 1 0 6 2 1 12 2 0 69 chain 3601 chr8 145138636 + 93897010 93897055 MLT1H2 457 + 89 134 94421 45 chain 35704 chr8 145138636 + 93999050 93999574 LTR12F 595 + 0 595 37601 91 5 18 7 1 0 25 8 7 29 6 14 15 18 9 71 0 64 148 3 0 97 chain 2998 chr8 145138636 + 94090729 94090762 MER39 703 + 159 192 99849 33 chain 25040 chr8 145138636 + 94107273 94107631 THE1B 368 + 0 368 49214 44 0 15 109 1 0 4 9 8 30 1 0 83 1 0 47 1 0 28 chain 5047 chr8 145138636 + 94256148 94256225 MER31B 477 + 255 330 85434 59 5 3 13 chain 162375 chr8 145138636 + 94293597 94295632 L1PA8 5853 + 3779 5847 11586 144 0 6 405 1 0 137 18 31 336 0 1 168 18 23 524 1 2 8 1 0 45 2 0 70 1 0 9 1 0 14 0 1 5 2 1 35 2 1 15 1 0 57 0 15 15 chain 26598 chr8 145138636 + 94321560 94321928 THE1D 372 + 0 372 46841 162 0 1 6 26 30 141 1 0 32 chain 57914 chr8 145138636 + 94324301 94324982 L1PA8A 6298 + 5607 6289 26993 582 1 2 98 chain 39032 chr8 145138636 + 94337779 94338211 L1PA3long 6157 + 5722 6153 35329 163 1 0 268 chain 67243 chr8 145138636 + 94340881 94341637 SVA_B 1603 + 864 1603 24639 111 15 0 622 2 0 6 chain 26772 chr8 145138636 + 94375262 94375627 THE1B 368 + 0 368 46580 40 1 6 126 10 9 111 2 1 75 chain 24009 chr8 145138636 + 94382606 94382985 THE1D 372 + 0 372 50777 46 26 17 103 0 6 6 37 33 161 chain 146730 chr8 145138636 + 94414165 94416526 L1PA3long 6157 + 3822 6157 12557 466 28 0 1246 0 2 621 chain 38368 chr8 145138636 + 94440841 94441314 LTR2B 499 + 9 499 35800 5 1 0 57 1 0 39 1 20 178 0 1 8 1 0 182 chain 8106 chr8 145138636 + 94454206 94454407 L1MB5 1630 + 1412 1612 74625 60 87 87 42 1 0 11 chain 33123 chr8 145138636 + 94579667 94580514 MER4A1 472 + 0 472 39421 173 398 0 57 25 45 95 0 3 99 chain 25394 chr8 145138636 + 94588929 94589681 Tigger3 1187 + 687 1176 48634 15 1 0 40 9 8 46 6 10 91 19 20 47 312 0 15 1 0 74 30 77 46 chain 135463 chr8 145138636 + 94590258 94592376 SVA_F 1814 + 335 1814 13491 545 1 0 56 0 1 10 220 16 214 1 0 10 433 0 617 1 0 10 chain 15509 chr8 145138636 + 94590871 94591088 SVA_F 1814 + 962 1138 51109 75 44 0 8 0 1 7 0 1 15 0 1 68 chain 3177 chr8 145138636 + 94590946 94590990 SVA_F 1814 + 1165 1213 76281 20 0 3 20 1 2 3 chain 20023 chr8 145138636 + 94591393 94591606 SVA_F 1814 + 962 1177 56361 181 0 1 7 0 1 25 chain 8752 chr8 145138636 + 94591623 94591723 SVA_F 1814 + 1192 1291 73101 82 1 0 17 chain 7148 chr8 145138636 + 94593615 94593703 MSTB1 431 + 343 431 77107 88 chain 4774 chr8 145138636 + 94596952 94597013 L1MD3 1191 + 1087 1148 86835 61 chain 61236 chr8 145138636 + 94607314 94608241 L1PB1 5432 + 4529 5417 26056 97 3 0 77 0 2 141 0 2 231 1 4 19 4 1 14 3 0 17 1 0 13 1 0 9 20 14 51 12 1 15 1 0 23 51 37 30 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 0 4 9 chain 25405 chr8 145138636 + 94613666 94613969 AluSp 311 + 0 308 48617 50 2 7 251 chain 26450 chr8 145138636 + 94619485 94619843 THE1A 353 + 0 353 47053 101 10 9 223 6 2 18 chain 14228 chr8 145138636 + 94748668 94748849 Charlie3 2679 + 80 257 63296 152 4 0 25 chain 4284 chr8 145138636 + 94749254 94749305 MER1B 344 + 293 344 89605 51 chain 4592 chr8 145138636 + 94775059 94775112 HSMAR2 1300 + 1 54 87833 53 chain 17299 chr8 145138636 + 94982249 94982468 Tigger3c 601 + 344 567 59458 40 0 4 179 chain 4239 chr8 145138636 + 94993431 94993479 MLT1H 522 + 122 170 89884 48 chain 5438 chr8 145138636 + 95021726 95021813 MER21C 908 + 557 645 83518 25 7 8 55 chain 4127 chr8 145138636 + 95054346 95054422 MER5A 189 + 49 126 90606 20 17 18 39 chain 8401 chr8 145138636 + 95055214 95055314 U6 107 + 1 101 73899 100 chain 30480 chr8 145138636 + 95090633 95091110 MLT2A1 477 + 0 477 41595 20 4 0 44 0 4 46 1 0 6 0 1 21 0 1 20 6 10 92 6 7 52 1 0 59 0 2 10 10 0 10 10 18 19 8 3 32 chain 114790 chr8 145138636 + 95106294 95107638 L1PA7 6471 + 5121 6469 16414 97 0 1 402 2 0 326 0 1 152 0 5 205 1 0 159 chain 29299 chr8 145138636 + 95122682 95123035 THE1A 353 + 0 353 42896 353 chain 128576 chr8 145138636 + 95123036 95124601 THE1A-int 1579 + 1 1574 14211 85 1 0 85 0 1 268 0 2 444 0 1 115 0 1 4 2 1 147 0 1 193 3 7 218 chain 26016 chr8 145138636 + 95124606 95124956 THE1A 353 + 0 351 47696 48 0 1 45 1 0 15 24 25 217 chain 76854 chr8 145138636 + 95188448 95189293 L1PA4 6152 + 5306 6151 22360 76 0 1 510 1 0 258 chain 28080 chr8 145138636 + 95207383 95207677 AluYk11 308 + 0 294 44749 294 chain 45916 chr8 145138636 + 95243219 95243797 L1PA7 6471 + 5878 6461 31095 50 3 16 240 0 4 110 19 18 102 11 0 43 chain 24683 chr8 145138636 + 95299837 95300289 MER51E 476 + 0 476 49759 42 7 8 101 1 36 101 49 40 46 40 13 19 0 24 46 chain 16197 chr8 145138636 + 95355108 95355445 THE1B 368 + 0 368 60751 108 14 15 33 58 93 5 3 0 52 31 29 33 chain 45327 chr8 145138636 + 95370880 95371360 L1HS 6032 + 4761 5241 31406 480 chain 4901 chr8 145138636 + 95446124 95446186 MER46C 351 + 278 341 86150 48 0 1 14 chain 15464 chr8 145138636 + 95458492 95458714 THE1C 375 + 156 375 61704 23 33 30 166 chain 42157 chr8 145138636 + 95500000 95500526 L1PA7 6471 + 5945 6466 33272 236 0 3 129 20 12 141 chain 32801 chr8 145138636 + 95546453 95546824 L1PA4 6152 + 5778 6152 39666 358 0 3 13 chain 68584 chr8 145138636 + 95546829 95547621 L1PA7 6471 + 5617 6413 24314 373 0 3 281 0 1 138 chain 4860 chr8 145138636 + 95564903 95564961 L1MA2 4263 + 4000 4058 86370 58 chain 9556 chr8 145138636 + 95614882 95614997 L1PB1 5432 + 4446 4561 71361 115 chain 53433 chr8 145138636 + 95717314 95717902 L1PA3long 6157 + 4721 5309 28416 588 chain 28709 chr8 145138636 + 95718281 95718586 AluYb8 318 + 0 304 43783 132 1 0 172 chain 3422 chr8 145138636 + 95719839 95719878 MADE1 96 + 46 85 95885 39 chain 98039 chr8 145138636 + 95747146 95748220 L1PA3long 6157 + 5082 6157 18522 925 0 1 149 chain 23816 chr8 145138636 + 95780198 95780539 THE1A 353 + 0 353 51073 60 9 23 17 11 10 92 1 0 151 chain 79482 chr8 145138636 + 95780539 95781842 THE1A-int 1579 + 0 992 21745 93 0 1 27 312 0 48 2 1 5 0 1 816 chain 6154 chr8 145138636 + 95781864 95781935 THE1A 353 + 131 202 80526 71 chain 8880 chr8 145138636 + 95781936 95782043 THE1A 353 + 202 310 72815 76 0 1 31 chain 136597 chr8 145138636 + 95823456 95825131 LTR12C 1709 + 0 1709 13377 574 5 4 232 0 40 262 1 0 8 2 0 104 0 4 235 38 9 69 1 0 16 18 41 10 14 15 86 chain 230834 chr8 145138636 + 95873559 95876938 L1PA13 3608 + 163 3515 8725 14 3 0 24 28 17 71 2 0 19 0 2 103 1 0 15 1 0 17 2 0 15 8 3 18 2 1 18 3 1 15 2 0 18 1 0 80 1 0 17 6 12 41 0 9 205 7 6 101 2 0 101 10 1 48 0 3 143 9 13 86 0 3 174 0 2 327 0 1 34 6 19 33 31 33 174 25 26 109 0 1 260 0 2 14 1 0 6 17 7 104 0 2 266 16 20 103 7 0 7 2 1 8 0 1 22 1 0 115 2 0 60 1 0 24 1 0 38 2 0 47 2 0 5 2 0 18 29 25 13 5 0 11 chain 19002 chr8 145138636 + 95883242 95883457 L1PA5 6144 + 4639 4854 57550 215 chain 46961 chr8 145138636 + 95920656 95921239 L1PA8 5853 + 5278 5853 30673 286 1 0 44 2 0 70 2 1 8 3 1 56 1 0 16 1 0 93 chain 28505 chr8 145138636 + 96019537 96020059 Tigger3 1187 + 632 1126 44122 19 0 2 11 2 0 12 0 16 13 17 0 39 29 14 40 1 0 120 2 3 44 10 0 14 7 6 99 26 25 17 chain 5057 chr8 145138636 + 96039613 96039672 MLT1F 544 + 345 404 85373 59 chain 503611 chr8 145138636 + 96070423 96076183 L1PA5 6144 + 0 5767 3008 172 0 5 6 15 10 233 1 0 538 1 0 4 0 1 341 0 1 1086 0 2 496 2 0 348 0 3 429 1 0 325 0 1 883 0 1 335 0 1 79 0 4 342 0 1 91 3 0 29 chain 29169 chr8 145138636 + 96085860 96086167 AluYk11 308 + 0 307 43098 307 chain 549666 chr8 145138636 + 96116677 96122698 L1PA2 6032 + 7 6032 773 67 0 1 181 1 0 950 0 1 990 0 1 1551 0 2 2281 chain 25109 chr8 145138636 + 96178993 96179297 AluY 311 + 0 311 49100 47 0 6 82 1 0 142 1 3 31 chain 86949 chr8 145138636 + 96192205 96193209 L1PA7 6471 + 3769 4775 20238 231 1 0 405 1 0 266 0 4 100 chain 3831 chr8 145138636 + 96355995 96356039 Tigger3c 601 + 38 82 92641 44 chain 95836 chr8 145138636 + 96452138 96453488 LTR12C 1709 + 0 1709 18789 211 15 3 72 9 14 37 14 61 63 0 3 6 7 4 89 3 5 41 5 6 35 0 278 143 0 47 97 20 13 277 1 0 116 7 6 82 chain 5695 chr8 145138636 + 96541599 96541673 L1MB3 1562 + 1343 1416 82365 11 1 0 62 chain 126926 chr8 145138636 + 96556408 96557788 L1PA2 6032 + 4652 6032 14423 1380 chain 138311 chr8 145138636 + 96694934 96696450 L1PA3long 6157 + 4640 6156 13236 1516 chain 19872 chr8 145138636 + 96898576 96898789 L1HS 6032 + 5819 6032 56578 213 chain 61179 chr8 145138636 + 96955434 96956110 L1PA4 6152 + 4550 5226 26065 676 chain 413519 chr8 145138636 + 97017956 97023463 L1PB1 5432 + 19 5420 4979 11 1 0 73 11 13 21 3 4 18 0 1 241 2 0 144 1 0 190 1 10 211 0 1 202 0 4 7 2 1 198 0 14 20 8 0 142 0 4 14 0 1 76 2 3 71 0 2 298 2 0 480 1 2 127 5 6 234 1 2 637 11 25 199 11 6 51 0 4 165 35 15 19 1 0 477 1 2 68 0 2 479 0 2 35 97 42 9 1 0 7 48 0 8 1 6 11 1 0 12 1 0 11 5 1 11 3 1 49 1 0 18 1 0 37 7 6 16 14 1 30 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 38672 chr8 145138636 + 97054115 97054728 L1PB3 3668 + 3034 3620 35586 190 0 2 65 1 0 100 20 19 68 23 7 43 3 1 33 11 7 13 2 1 12 6 3 16 1 0 6 chain 8197 chr8 145138636 + 97072511 97072600 L1PB 1623 + 1066 1155 74418 89 chain 65998 chr8 145138636 + 97092458 97093449 L1PA15 4387 + 3307 4287 24962 377 0 5 123 21 15 59 8 6 41 1 0 163 4 3 5 1 0 26 2 0 18 19 24 12 2 1 20 4 0 11 2 1 22 0 1 22 14 11 14 chain 19981 chr8 145138636 + 97150395 97150693 THE1B 368 + 0 306 56411 27 0 1 124 0 5 12 1 0 11 0 1 4 2 1 13 0 3 11 16 17 12 1 0 64 chain 29573 chr8 145138636 + 97175028 97175463 LTR7Y 441 + 0 441 42513 103 12 3 54 69 84 197 chain 297810 chr8 145138636 + 97175469 97179110 HERVH-int 3825 + 16 3825 6892 516 129 0 38 1 0 10 1 0 24 1 52 42 2 1 18 0 1 5 9 7 49 1 0 179 0 1 482 0 1 157 0 5 81 4 31 959 0 1 157 2 1 236 16 21 29 8 218 260 0 2 225 chain 3442 chr8 145138636 + 97175990 97176028 HERVH-int 3825 + 532 570 95721 38 chain 29699 chr8 145138636 + 97180298 97180739 LTR7Y 441 + 0 441 42367 103 9 0 57 75 84 197 chain 39756 chr8 145138636 + 97200769 97201220 LTR7 482 + 0 482 34849 261 0 31 190 chain 300169 chr8 145138636 + 97201222 97204957 HERVH-int 3825 + 0 3825 6826 212 4 15 305 132 0 38 1 0 10 1 0 26 0 13 12 3 0 26 25 3 60 21 0 9 2 1 49 1 0 292 0 1 520 1 7 86 4 31 290 0 4 1110 8 218 36 0 1 5 1 0 445 chain 40095 chr8 145138636 + 97206205 97206656 LTR7 482 + 0 482 34595 246 1 32 204 chain 9347 chr8 145138636 + 97272370 97272491 MLT1B 390 + 251 375 71824 4 1 0 59 0 2 12 0 2 45 chain 560585 chr8 145138636 + 97295603 97301654 L1PA2 6032 + 4 6032 156 6020 23 0 8 chain 13132 chr8 145138636 + 97358264 97358475 U3 216 + 0 213 64876 85 37 40 70 1 0 18 chain 49012 chr8 145138636 + 97370332 97371165 L1PB1 5432 + 4639 5422 29949 260 0 2 22 1 0 172 11 10 11 21 0 22 1 0 8 1 0 10 18 12 52 2 1 10 7 6 44 1 0 11 69 54 24 4 3 19 18 16 14 chain 5955 chr8 145138636 + 97382037 97382106 LTR39 781 + 42 112 81256 65 0 1 4 chain 10072 chr8 145138636 + 97385856 97386030 MER21C 908 + 713 882 70247 54 1 0 61 38 34 20 chain 68105 chr8 145138636 + 97415464 97416230 L1PA4 6152 + 5379 6152 24429 11 0 1 137 0 2 206 0 4 412 chain 35381 chr8 145138636 + 97422224 97422721 MER41C 542 + 0 542 37782 44 5 6 40 0 4 67 1 37 4 1 0 112 1 2 18 0 2 174 4 6 26 chain 82018 chr8 145138636 + 97429000 97429948 L1PA5 6144 + 5202 6144 21237 333 15 9 600 chain 12569 chr8 145138636 + 97454360 97454511 L1PA7 6471 + 6319 6468 65854 138 3 1 10 chain 32414 chr8 145138636 + 97457021 97457453 L1PB1 5432 + 4666 5098 40028 41 0 1 6 4 3 80 11 11 290 chain 89653 chr8 145138636 + 97495150 97496829 L1MA2 4263 + 2641 4114 19737 4 1 0 255 4 8 65 1 0 98 311 1 9 0 10 23 8 0 48 0 102 35 14 15 10 21 0 31 0 2 53 0 10 47 0 5 102 4 13 37 4 1 17 0 4 15 2 1 134 13 10 29 0 1 89 2 1 30 2 1 8 1 0 37 1 2 48 14 11 40 2 1 10 chain 58854 chr8 145138636 + 97515966 97516604 L1PA2 6032 + 5376 6014 26719 638 chain 33940 chr8 145138636 + 97522082 97522684 L1PA15 4387 + 3783 4356 38754 26 9 8 28 3 1 42 2 0 45 1 0 163 9 8 26 1 0 19 8 3 33 1 0 21 4 0 10 4 3 37 25 22 36 22 15 27 chain 527305 chr8 145138636 + 97529888 97536735 L1PA7 6471 + 4 6468 1943 60 0 23 316 0 1 162 17 0 148 1 0 4 0 1 261 10 11 11 0 8 240 6 0 300 2 0 83 0 2 312 1 0 328 0 2 31 1 6 56 6 5 145 0 2 109 4 1 361 3 0 11 0 3 89 0 4 384 8 8 11 9 8 38 0 4 256 2 0 482 51 0 267 348 0 56 7 8 30 0 1 332 1 0 420 0 1 215 2 0 837 3 0 10 chain 3083 chr8 145138636 + 97543164 97543196 MER52C 1267 + 941 973 98962 32 chain 46192 chr8 145138636 + 97545710 97546220 L1PA5 6144 + 5266 5776 30963 510 chain 7247 chr8 145138636 + 97557291 97557625 LTR12D 1347 + 728 1120 76826 40 225 284 30 1 0 38 chain 3274 chr8 145138636 + 97557644 97557678 LTR12D 1347 + 957 991 97252 34 chain 12390 chr8 145138636 + 97561173 97561315 L1PA4 6152 + 6012 6152 66150 135 2 0 5 chain 96824 chr8 145138636 + 97604385 97605563 SVA_B 1603 + 52 1264 18672 584 79 0 110 0 77 98 4 0 29 0 40 274 chain 5561 chr8 145138636 + 97604969 97605048 SVA_B 1603 + 520 599 62364 79 chain 3483 chr8 145138636 + 97625527 97625570 MADE1 96 + 51 96 95363 18 0 2 25 chain 8205 chr8 145138636 + 97649030 97649182 Tigger3a 397 + 139 371 74406 21 0 10 31 0 1 45 37 106 18 chain 3560 chr8 145138636 + 97660624 97660668 MER58D 378 + 330 374 94754 44 chain 3994 chr8 145138636 + 97668408 97668452 MER4E1 777 + 663 707 91492 44 chain 6059 chr8 145138636 + 97668475 97668550 Charlie1a 1436 + 860 935 80876 75 chain 68486 chr8 145138636 + 97770186 97770928 L1PA3long 6157 + 5405 6147 24339 742 chain 29432 chr8 145138636 + 97771233 97771542 AluYa5 310 + 1 310 42691 309 chain 6609 chr8 145138636 + 97772321 97772420 HY1 111 + 9 108 78953 65 13 13 21 chain 12332 chr8 145138636 + 97806977 97807117 THE1A 353 + 213 353 66249 140 chain 40270 chr8 145138636 + 97880274 97880758 LTR15 485 + 0 481 34463 30 2 0 247 2 0 30 0 3 110 7 5 56 chain 33752 chr8 145138636 + 97885863 97886408 MER1A 529 + 0 529 38886 18 20 28 34 14 18 77 51 0 45 0 22 104 1 0 110 7 9 64 chain 14868 chr8 145138636 + 98173969 98174341 MLT1A 405 + 24 391 62429 7 1 0 8 12 16 19 12 6 95 70 75 10 2 0 7 27 28 9 6 0 87 chain 8398 chr8 145138636 + 98190622 98190729 MER58A 224 + 53 160 73906 107 chain 58851 chr8 145138636 + 98257015 98258088 MER4D1 891 + 0 883 26721 40 16 18 62 2 1 190 231 6 97 1 0 16 1 0 34 5 23 39 0 1 21 11 23 32 0 5 28 0 1 137 0 1 46 1 0 57 1 0 5 chain 555195 chr8 145138636 + 98260275 98266293 L1PA2 6032 + 10 6030 397 64 0 1 182 1 0 489 0 1 1684 0 1 1128 2 1 260 0 1 2208 chain 5124 chr8 145138636 + 98296946 98297015 LTR64 526 + 459 526 85046 55 2 0 12 chain 3614 chr8 145138636 + 98352398 98352464 Tigger4b 360 + 0 66 94320 27 7 0 7 1 8 24 chain 13121 chr8 145138636 + 98379755 98380108 L1MB1 2102 + 1708 2051 64896 31 1 0 8 1 0 7 1 0 90 100 97 41 41 38 18 1 0 13 chain 27003 chr8 145138636 + 98384026 98384487 MER51E 476 + 0 476 46268 129 0 4 10 2 37 11 28 0 165 0 23 7 1 29 17 55 8 36 chain 3531 chr8 145138636 + 98603686 98603726 MSTB 430 + 7 47 95005 40 chain 2718 chr8 145138636 + 98606867 98607032 MER21C 908 + 615 776 102198 27 118 114 20 chain 556380 chr8 145138636 + 98614445 98620471 L1PA2 6032 + 0 6024 342 394 2 0 5630 chain 549987 chr8 145138636 + 98650357 98656487 L1PA3long 6157 + 6 6149 749 216 0 1 396 1 0 210 0 1 210 1 2 369 0 9 379 0 1 3823 0 1 525 chain 8266 chr8 145138636 + 98675476 98675579 L1MB3 1562 + 1017 1120 74243 103 chain 461766 chr8 145138636 + 98710176 98715484 L1PA4 6152 + 21 5343 4087 557 0 2 350 0 4 265 0 1 13 0 1 22 1 0 581 0 1 227 0 1 148 1 0 1030 0 4 23 0 5 30 1 0 396 3 0 258 0 1 302 3 1 492 0 1 564 0 1 41 chain 16316 chr8 145138636 + 98733362 98733592 MER1B 344 + 93 332 60609 20 4 1 139 11 23 56 chain 551690 chr8 145138636 + 98738605 98744742 L1PA3long 6157 + 4 6157 624 210 1 0 405 1 0 826 0 1 1732 0 12 66 0 3 844 0 2 558 6 2 645 0 4 7 0 1 582 1 0 253 chain 92783 chr8 145138636 + 98750589 98752227 L1PA13 3608 + 2213 3488 19220 28 4 0 7 3 1 511 1 0 43 8 7 322 1 0 7 22 21 113 342 0 48 27 24 46 1 0 5 2 0 48 2 0 4 2 0 18 1 0 22 chain 85194 chr8 145138636 + 98778092 98779027 L1PA4 6152 + 5203 6138 20586 935 chain 366331 chr8 145138636 + 98787220 98793320 L1PB1 5432 + 583 5424 5720 25 0 8 291 1 2 114 1 6 6 5 0 369 14 1 109 327 0 31 0 4 170 4 15 106 0 4 10 1 3 117 0 1 336 0 1 63 0 4 167 1 0 27 0 1 262 271 6 28 7 1 290 10 16 64 0 1 37 0 2 216 303 0 144 0 1 84 5 6 407 0 3 63 0 2 102 0 1 165 0 4 26 0 1 90 0 10 7 17 8 110 1 0 5 1 2 69 0 8 58 0 1 57 314 2 80 0 2 87 70 1 11 1 0 24 1 0 9 1 0 11 15 9 53 2 1 16 1 0 43 1 0 16 3 0 6 17 7 18 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 9280 chr8 145138636 + 98801057 98801171 LTR12C 1709 + 931 1045 71952 114 chain 66137 chr8 145138636 + 98812277 98813046 L1PA5 6144 + 5373 6144 24925 302 0 2 467 chain 9984 chr8 145138636 + 98836523 98836681 LTR41 747 + 598 743 70455 113 14 0 10 4 5 17 chain 37988 chr8 145138636 + 98878311 98878813 LTR10F 562 + 0 562 36082 113 0 84 32 1 4 12 28 0 182 0 1 134 chain 2784 chr8 145138636 + 98886344 98886401 Tigger4b 360 + 0 41 101747 28 16 0 13 chain 10093 chr8 145138636 + 98887283 98887456 Tigger4a 237 + 73 237 70210 26 25 25 54 9 0 59 chain 30647 chr8 145138636 + 98915063 98915428 MLT2A1 477 + 0 382 41429 171 3 0 8 0 20 183 chain 381535 chr8 145138636 + 99063100 99067641 L1PA6 6164 + 0 6153 5459 467 1 0 50 1 2 308 1 0 90 10 0 137 0 1 1033 0 1601 39 1 0 277 0 8 162 7 6 181 0 4 53 0 1 898 1 5 23 0 6 801 chain 10796 chr8 145138636 + 99093797 99093919 L1P1 4361 + 3335 3457 68868 122 chain 4785 chr8 145138636 + 99110513 99110653 MER3 215 - 8 160 86768 32 73 85 35 chain 224113 chr8 145138636 + 99202443 99205505 L1PA7 6471 + 3701 6461 8925 32 10 14 34 1 0 228 320 5 142 1 0 110 0 1 409 0 4 224 3 4 144 1 0 4 0 1 566 7 11 357 0 1 469 chain 4209 chr8 145138636 + 99218194 99218322 MER58C 217 + 66 208 90066 14 1 0 8 58 73 47 chain 39070 chr8 145138636 + 99266957 99267447 THE1C-int 1605 + 22 519 35308 423 8 15 59 chain 28535 chr8 145138636 + 99268816 99269187 THE1C 375 + 1 375 44061 185 0 1 56 6 7 21 0 1 103 chain 40748 chr8 145138636 + 99290209 99290665 L1PA5 6144 + 5688 6144 34123 456 chain 6473 chr8 145138636 + 99292970 99293040 U3 216 + 0 70 79429 70 chain 137773 chr8 145138636 + 99293041 99294541 L1PA2 6032 + 4517 6020 13282 682 5 8 813 chain 182383 chr8 145138636 + 99335506 99337515 L1PA3long 6157 + 4137 6149 10476 567 0 1 496 0 2 946 chain 95648 chr8 145138636 + 99371806 99373326 L1PA8 5853 + 4633 5853 18822 172 294 0 201 1 0 3 2 0 555 1 0 44 2 0 48 8 10 15 2 1 9 1 0 49 2 1 19 1 0 57 4 6 30 chain 217163 chr8 145138636 + 99424374 99428476 L1PA4 6152 + 2802 5333 9115 362 9 3 10 1 0 58 2 3 65 0 1 819 0 14 190 1584 0 977 0 4 25 chain 66084 chr8 145138636 + 99519207 99519957 L1PA5 6144 + 5389 6140 24943 493 0 1 257 chain 7205 chr8 145138636 + 99527835 99527925 HY3 101 + 10 100 76931 90 chain 141414 chr8 145138636 + 99542901 99544473 L1PA3long 6157 + 4585 6157 12988 1572 chain 64400 chr8 145138636 + 99586690 99593406 L1PA11 4918 + 3527 4508 25325 137 3 0 9 5727 0 452 20 21 185 2 0 21 1 0 4 6 7 32 7 6 74 2 0 13 1 0 20 chain 82197 chr8 145138636 + 99602488 99610744 L1PA7 6471 + 4414 6467 21202 262 0 4 268 7165 955 233 0 3 328 chain 6355 chr8 145138636 + 99626012 99626091 L1MB8 1703 + 596 677 79822 23 0 2 56 chain 65392 chr8 145138636 + 99666201 99666930 L1PA4 6152 + 3531 4259 25091 724 1 0 4 chain 382644 chr8 145138636 + 99691571 99695711 L1PA2 6032 + 1893 6032 5434 1150 1 0 2989 chain 469538 chr8 145138636 + 99738837 99744161 L1PA4 6152 + 0 5333 3869 739 0 1 496 1 0 3120 0 4 473 10 7 197 0 1 263 1 8 24 chain 8518 chr8 145138636 + 99772496 99772609 L1MB3 1562 + 1443 1555 73643 80 1 0 32 chain 6313 chr8 145138636 + 99899767 99899881 MER6A 605 + 250 368 79953 10 5 0 38 16 25 45 chain 56466 chr8 145138636 + 99902922 99903566 L1PA7 6471 + 5784 6428 27440 644 chain 127520 chr8 145138636 + 99926597 99928037 SVA_C 1631 + 21 1625 14352 33 10 0 371 0 1 256 1 0 39 3 0 47 0 40 73 0 137 607 chain 29191 chr8 145138636 + 99943694 99944123 LTR7 482 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22 0 15 183 0 17 582 0 1 128 3 1 169 1 3 363 1 2 30 1 0 250 0 1 285 0 1 645 0 3 675 0 1 380 0 1 168 0 1 149 2 0 669 0 4 78 0 2 755 chain 169249 chr8 145138636 + 100031815 100033779 L1PA6 6164 + 1796 3819 11142 417 0 2 61 1 0 59 0 1 913 2 3 271 7 0 116 0 59 21 8 12 88 chain 189911 chr8 145138636 + 100033781 100035976 L1PA6 6164 + 3819 6023 10127 952 0 9 717 2 0 80 0 1 51 0 1 393 chain 11550 chr8 145138636 + 100035977 100036121 L1PA6 6164 + 6025 6162 67658 131 7 0 6 chain 122816 chr8 145138636 + 100055463 100059620 L1M1 2793 + 781 2695 15054 21 1 0 29 2 0 10 1 0 24 2237 9 19 25 23 8 2 0 6 0 2 71 1 0 178 0 1 17 0 3 71 28 33 47 0 1 198 0 1 11 53 58 24 47 0 24 0 1 196 12 8 169 1 0 29 1 15 18 1 4 8 0 4 154 7 0 21 0 9 28 0 4 11 0 4 28 0 1 34 1 3 20 1 0 107 3 0 82 1 0 46 1 0 11 1 0 10 chain 120442 chr8 145138636 + 100055889 100057434 THE1B-int 1605 + 0 1605 15454 42 2 3 142 0 3 202 0 64 58 0 1 158 0 1 8 2 0 13 3 2 123 4 0 203 0 2 511 0 1 15 7 6 14 3 0 12 2 0 21 chain 27120 chr8 145138636 + 100060508 100060926 L1PA13 3608 + 3090 3468 46096 42 36 6 21 2 1 113 2 0 63 1 0 60 2 0 48 10 6 18 chain 47436 chr8 145138636 + 100107692 100108373 L1PA10 4194 + 986 1662 30493 290 15 19 126 0 3 32 48 35 111 0 1 59 chain 475834 chr8 145138636 + 100108377 100114420 L1PA7 6471 + 0 6455 3728 37 20 21 185 0 1 8 0 7 145 2 0 69 1 0 26 10 11 67 3 0 141 0 1 6 1 0 17 10 15 24 0 1 194 2 19 24 6 7 159 0 2 28 0 4 16 15 38 175 0 2 344 0 6 68 17 12 164 0 4 163 5 6 75 0 6 222 0 2 109 3 1 239 5 21 177 18 19 204 0 1 313 1 0 107 0 3 275 0 2 29 0 1 584 0 2 604 1 0 299 0 315 82 0 1 100 0 2 62 0 1 61 0 1 78 1 0 107 2 0 133 chain 30574 chr8 145138636 + 100114729 100115104 MLT2A1 477 + 0 385 41500 33 0 5 104 0 1 25 5 9 208 chain 232251 chr8 145138636 + 100115702 100119050 L1PA11 4918 + 1470 4500 8685 67 63 51 225 1 2 400 38 44 266 31 26 32 1 0 137 1 0 89 0 1 292 5 10 139 0 1 413 5 21 162 3 4 203 325 0 270 1 0 68 2 1 79 2 0 16 1 0 11 chain 51343 chr8 145138636 + 100161390 100162038 PABL_A 660 + 0 660 29101 84 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chain 25783 chr8 145138636 + 100483634 100483987 THE1C 375 + 18 375 48043 7 2 0 110 0 4 44 1 2 5 1 0 13 0 3 144 1 0 25 chain 31001 chr8 145138636 + 100495623 100496027 LTR7 482 + 0 475 41122 69 9 46 109 9 41 42 0 2 166 chain 3006 chr8 145138636 + 100508968 100509003 MER34A 573 + 491 526 99793 35 chain 18188 chr8 145138636 + 100538289 100538530 MER2 342 + 37 278 58475 42 0 4 17 4 0 178 chain 120124 chr8 145138636 + 100545607 100547178 THE1D-int 1627 + 0 1620 15519 15 6 8 14 1 0 73 0 11 271 35 39 68 0 1 13 0 4 179 1 0 498 4 28 72 0 3 9 0 1 216 0 1 96 chain 14192 chr8 145138636 + 100560588 100560818 MER30 238 + 0 238 63328 25 32 27 60 4 17 109 chain 81611 chr8 145138636 + 100627851 100628750 L1PA4 6152 + 5252 6151 21312 899 chain 3893 chr8 145138636 + 100703456 100703603 MER58A 224 + 62 208 92202 22 85 84 40 chain 34894 chr8 145138636 + 100765190 100766246 MER41A 554 + 22 546 38095 77 0 16 239 624 76 116 chain 24213 chr8 145138636 + 100767309 100767645 L1MA5A 2387 + 782 1109 50473 65 2 6 39 11 0 66 1 0 57 1 0 94 chain 7473 chr8 145138636 + 100787080 100787187 MLT1D 503 + 393 501 76192 56 5 6 46 chain 27588 chr8 145138636 + 100807526 100807900 THE1C 375 + 0 375 45470 85 0 1 93 0 2 5 0 1 14 10 7 167 chain 3615 chr8 145138636 + 100828280 100828324 MER102b 334 + 100 144 94318 44 chain 480439 chr8 145138636 + 100852321 100857661 L1PA4 6152 + 0 5348 3624 579 1 0 629 0 1 635 0 4 628 0 1 1519 0 3 1349 chain 79834 chr8 145138636 + 100968629 100969590 LTR13A 966 + 0 966 21654 68 0 4 55 0 1 228 0 1 26 1 0 583 chain 6656 chr8 145138636 + 101042760 101042848 LTR37A 408 + 303 389 78793 32 2 0 54 chain 4132 chr8 145138636 + 101153871 101153920 MLT1J 494 + 96 145 90558 49 chain 30091 chr8 145138636 + 101162537 101162958 LTR7B 505 + 0 503 41963 90 0 3 15 0 10 6 0 6 45 0 38 12 9 33 20 0 2 85 1 0 21 0 1 54 14 13 49 chain 25576 chr8 145138636 + 101273317 101273614 LTR17 781 + 29 326 48355 297 chain 4974 chr8 145138636 + 101307367 101307427 U7 62 + 1 61 85783 60 chain 35126 chr8 145138636 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50994 chr8 145138636 + 104444726 104445513 L1MA2 4263 + 3379 4140 29218 187 1 0 18 5 1 77 1 0 132 15 12 118 1 0 25 22 0 7 1 19 82 14 7 41 1 0 9 4 2 8 3 1 15 chain 195058 chr8 145138636 + 104525692 104527835 L1PA3long 6157 + 4001 6152 9888 7 0 4 281 0 2 20 1 0 940 1 0 56 0 2 822 0 2 15 chain 85338 chr8 145138636 + 104558245 104559601 L1PB1 5432 + 4109 5422 20558 4 0 1 44 1 0 5 1 2 41 5 1 400 13 14 11 12 8 65 2 3 123 1 0 160 0 3 109 13 11 24 8 6 12 2 0 3 2 0 9 2 0 41 1 0 10 1 0 12 8 7 43 1 0 15 1 0 4 23 12 14 37 26 18 1 0 21 1 0 13 1 0 18 chain 10860 chr8 145138636 + 104571748 104571908 MER1B 344 + 159 322 68761 105 21 24 34 chain 22054 chr8 145138636 + 104606437 104606762 THE1B 368 + 0 328 53761 169 1 0 21 3 5 4 0 1 10 0 4 16 1 0 12 2 1 60 2 0 7 1 2 16 chain 117884 chr8 145138636 + 104606801 104608323 THE1B-int 1605 + 0 1599 15902 13 4 3 257 0 6 116 0 64 229 15 16 11 3 0 41 12 13 220 0 5 558 0 4 43 chain 12734 chr8 145138636 + 104693202 104693397 L1PA8 5853 + 5651 5843 65553 27 16 9 22 0 6 20 7 6 19 1 0 83 chain 22319 chr8 145138636 + 104702170 104702521 THE1D 372 + 1 372 53385 52 12 22 16 5 0 75 6 10 14 0 6 29 15 21 90 2 1 35 chain 35604 chr8 145138636 + 104736407 104736843 MER41A 554 + 0 441 37655 104 1 0 76 3 9 252 chain 24677 chr8 145138636 + 104765873 104766265 L1PA15 4387 + 3914 4295 49765 18 1 0 113 3 5 54 2 1 19 7 6 55 1 0 22 5 0 10 1 0 40 16 13 25 chain 39964 chr8 145138636 + 104861895 104862401 THE1D-int 1627 + 0 506 34686 38 1 0 84 0 1 383 chain 95997 chr8 145138636 + 104999112 105000273 L1PA8A 6298 + 5114 6290 18777 63 0 5 307 0 6 50 0 3 34 1 0 32 0 1 242 0 3 332 2 0 98 chain 178698 chr8 145138636 + 105037156 105039345 L1PA7 6471 + 3963 6138 10653 194 5 0 353 6 0 52 0 5 21 9 0 33 1 0 50 0 6 244 15 9 697 0 1 83 0 1 254 4 5 149 1 0 18 chain 57756 chr8 145138636 + 105050036 105050689 L1PA5 6144 + 5488 6141 27035 653 chain 26060 chr8 145138636 + 105056240 105056597 THE1B 368 + 9 368 47642 167 1 0 9 0 2 11 0 3 28 2 1 9 5 4 125 chain 122483 chr8 145138636 + 105057218 105058686 L1PA6 6164 + 4693 6159 15117 619 1 5 808 10 4 30 chain 29693 chr8 145138636 + 105169182 105169501 AluYb8 318 + 0 318 42375 222 1 0 96 chain 21462 chr8 145138636 + 105209869 105210231 L1PA11 4918 + 4228 4567 54566 103 3 0 56 11 10 10 3 2 6 1 0 57 2 0 16 1 0 20 4 0 12 23 14 20 1 0 13 chain 22746 chr8 145138636 + 105234319 105234679 THE1C 375 + 0 364 52763 86 4 0 100 27 28 38 0 1 19 1 0 5 5 11 48 2 3 25 chain 47008 chr8 145138636 + 105308911 105309422 L1PA3long 6157 + 4589 5100 30657 511 chain 23018 chr8 145138636 + 105506734 105507013 AluY 311 + 29 308 52332 94 1 0 9 0 1 175 chain 5181 chr8 145138636 + 105721861 105721967 MER33 330 + 13 118 84766 46 29 28 31 chain 5469 chr8 145138636 + 105781324 105781400 MIR 256 + 178 253 83352 8 1 0 67 chain 353762 chr8 145138636 + 105850607 105856153 L1PB1 5432 + 554 5419 5871 793 1 4 26 6 1 6 0 5 6 1 0 7 2 0 5 35 30 563 19 2 79 2 1 38 3 1 95 0 1 281 7 0 341 27 29 519 0 1 127 0 8 15 3 5 92 305 0 101 32 1 172 0 1 153 1 6 416 332 24 96 0 4 6 0 4 10 4 1 160 42 45 268 1 2 12 3 0 21 1 0 5 20 15 9 2 0 53 20 18 43 1 0 10 8 5 15 9 0 16 26 21 22 1 0 21 1 0 13 1 0 15 chain 332338 chr8 145138636 + 105896675 105900866 L1P3 4156 + 0 4139 6178 251 20 19 46 5 4 272 7 9 957 1 0 73 2 5 31 57 1 770 3 0 50 1 10 14 0 13 103 8 5 40 20 4 167 0 1 59 0 4 150 0 1 472 1 0 418 0 1 48 2 1 106 13 10 24 chain 32993 chr8 145138636 + 105925367 105925802 MLT2A1 477 + 0 475 39520 168 5 2 11 0 1 22 0 1 166 1 0 24 3 45 35 chain 27066 chr8 145138636 + 105926514 105926870 THE1A 353 + 0 353 46175 110 1 0 82 8 6 155 chain 297753 chr8 145138636 + 105954887 105959442 L1PA5 6144 + 0 6135 6895 137 19 13 131 783 0 622 0 2 168 0 3 606 0 1 30 1 11 155 17 6 796 0 3 13 1 0 122 201 2563 428 0 1 185 1 0 139 chain 67280 chr8 145138636 + 105967752 105968500 L1PA4 6152 + 5404 6152 24626 748 chain 56691 chr8 145138636 + 105996642 105997378 LTR12 884 + 0 884 27367 143 2 1 103 0 25 64 8 31 10 2 0 181 0 103 223 chain 530690 chr8 145138636 + 106023328 106029434 L1PA5 6144 + 3 6141 1801 117 1 15 8 14 0 311 0 1 236 0 1 320 0 1 671 0 1 621 0 1 215 0 1 729 0 5 1058 0 2 1640 0 19 165 chain 62101 chr8 145138636 + 106039033 106039711 L1PA3long 6157 + 4358 5036 25844 678 chain 491475 chr8 145138636 + 106064963 106071193 L1PA7 6471 + 5 6466 3386 192 15 14 99 27 200 239 0 15 597 1 2 26 0 3 8 7 4 412 5 6 525 0 11 255 0 4 20 1 4 23 12 14 19 1 3 197 6 8 193 0 3 173 0 3 116 0 1 90 3 2 90 0 1 4 2 1 253 0 1 403 0 10 8 11 1 104 2 1 5 0 1 22 5 10 273 0 4 943 1 0 87 1 2 180 15 17 559 chain 3661 chr8 145138636 + 106076111 106076173 MLT2B4 540 + 491 540 93911 13 13 0 36 chain 78413 chr8 145138636 + 106076808 106077775 MER11B 1079 + 0 1062 21999 217 1 2 97 1 18 54 0 1 376 3 4 66 0 74 97 0 1 55 chain 27727 chr8 145138636 + 106092545 106093013 MLT2A2 560 + 0 511 45282 180 1 0 9 35 38 81 9 41 57 27 38 57 1 0 4 1 0 6 chain 97235 chr8 145138636 + 106117995 106119109 L1PA5 6144 + 4697 5810 18628 597 1 0 516 chain 27113 chr8 145138636 + 106119109 106119445 L1PA5 6144 + 5811 6144 46106 225 1 0 96 3 1 11 chain 11909 chr8 145138636 + 106133067 106133433 MSTB2 466 + 85 455 66986 20 78 82 21 6 7 34 104 103 103 chain 22266 chr8 145138636 + 106210084 106210389 L1PA8 5853 + 5551 5849 53455 13 1 0 44 2 0 70 2 1 9 1 0 52 2 1 19 2 1 88 chain 15418 chr8 145138636 + 106247384 106247591 Charlie3 2679 + 2396 2600 61761 67 6 0 80 0 3 54 chain 4191 chr8 145138636 + 106291557 106291610 MER44C 733 + 36 89 90190 53 chain 95307 chr8 145138636 + 106322149 106323568 L1PA14 3548 + 2026 3456 18866 172 0 1 173 3 15 92 1 2 45 15 14 79 0 1 27 7 6 35 1 0 231 5 0 19 3 1 13 2 0 27 0 1 25 2 0 67 0 2 30 45 38 76 0 14 57 1 10 44 4 0 36 4 2 12 1 0 5 1 0 16 1 0 42 chain 3289 chr8 145138636 + 106356456 106356506 MADE2 80 + 19 69 97117 34 0 3 5 3 0 8 chain 3237 chr8 145138636 + 106439233 106439407 MLT1A 405 + 133 337 97596 10 1 0 14 6 0 7 0 2 5 49 86 17 44 42 21 chain 83507 chr8 145138636 + 106443753 106444797 L1PA8A 6298 + 5240 6291 20913 249 2 1 18 6 7 19 1 2 117 1 3 12 4 5 207 0 2 296 0 1 112 chain 37925 chr8 145138636 + 106500183 106500660 LTR2B 499 + 5 499 36119 7 0 1 61 3 0 37 0 19 176 0 1 10 1 0 182 chain 12330 chr8 145138636 + 106537533 106537686 L1PA6 6164 + 6006 6159 66252 153 chain 501007 chr8 145138636 + 106560724 106567019 L1PA7 6471 + 12 6364 3100 418 10 47 43 4 3 271 1 2 417 0 4 160 1 2 63 1 2 55 10 9 56 26 27 42 0 2 26 0 1 315 1 2 350 6 5 186 0 2 110 19 0 221 0 1 287 0 1 252 0 1 57 0 5 155 1 0 126 28 29 321 4 6 111 1 2 274 0 4 75 15 14 4 0 1 376 1 0 200 0 5 454 0 3 83 2 3 459 2 7 195 chain 33959 chr8 145138636 + 106591054 106591450 L1PA4 6152 + 5758 6152 38739 239 7 0 144 0 5 6 chain 39494 chr8 145138636 + 106671517 106671963 L1PA5 6144 + 5683 6128 35016 347 1 0 98 chain 30410 chr8 145138636 + 106685717 106686244 L1PB1 5432 + 4905 5402 41667 112 0 2 84 1 2 10 3 0 19 1 0 12 2 1 9 2 0 3 2 0 9 2 0 52 18 16 45 1 0 15 45 31 5 1 0 14 2 0 24 1 0 21 1 0 11 chain 71814 chr8 145138636 + 106742363 106743285 L1PA11 4918 + 3586 4517 23590 594 0 5 146 0 1 24 0 11 28 1 0 4 15 12 63 2 0 14 1 0 20 1 0 9 chain 255470 chr8 145138636 + 106789171 106792396 HERV9-int 5642 + 16 3251 8102 402 0 1 180 6 4 113 6 0 79 1 0 46 0 12 85 86 91 74 76 78 127 0 1 1576 2 0 366 chain 2952 chr8 145138636 + 106790119 106790151 HERV9-int 5642 + 1053 1085 100357 32 chain 36821 chr8 145138636 + 106793618 106794107 LTR12 884 + 0 748 36870 25 1 0 111 0 2 49 0 157 34 2 0 169 0 103 98 chain 34827 chr8 145138636 + 106875274 106875699 L1PA6 6164 + 5730 6156 38138 252 0 1 173 chain 226852 chr8 145138636 + 106883080 106885615 L1PA5 6144 + 3335 5872 8844 740 3 0 1223 0 5 569 chain 16426 chr8 145138636 + 106902425 106902783 THE1C 375 + 0 364 60481 15 2 0 12 1 0 20 85 96 27 1 0 9 0 2 5 22 20 144 1 0 14 chain 4295 chr8 145138636 + 106911485 106911564 MADE1 96 - 0 96 89541 28 15 32 36 chain 2818 chr8 145138636 + 106950578 106950621 MER52A 1651 + 963 999 101537 30 7 0 6 chain 28610 chr8 145138636 + 106960973 106961323 L1PA8A 6298 + 5934 6289 43938 249 0 1 79 6 10 16 chain 4710 chr8 145138636 + 106992690 106992743 MER1B 344 + 286 339 87196 53 chain 297078 chr8 145138636 + 107001823 107005825 L1PA8 5853 + 1763 5809 6921 12 0 2 245 6 0 64 12 7 36 0 1 91 4 30 25 0 8 197 0 4 198 8 0 29 3 2 99 1 2 50 22 17 37 13 3 12 3 7 14 0 3 233 20 24 179 6 9 501 0 2 217 20 33 207 5 1 212 1 0 131 0 1 279 0 4 14 0 2 75 0 2 395 1 2 83 1 0 44 2 0 43 0 8 19 21 21 41 2 1 19 2 1 48 chain 5540 chr8 145138636 + 107005914 107005981 L1PB1 5432 + 1450 1517 83078 67 chain 11912 chr8 145138636 + 107022306 107022536 L1MA8 2339 + 1840 2064 66975 70 20 16 32 2 0 18 33 33 55 chain 161028 chr8 145138636 + 107043201 107045711 L1PB1 5432 + 2955 5391 11684 93 26 0 194 1 0 487 7 0 221 1 3 109 0 5 26 5 3 87 1 4 445 18 15 29 0 3 76 28 0 39 8 0 10 4 11 74 3 4 210 1 2 9 1 0 24 1 0 9 16 11 11 3 1 13 0 8 29 2 1 60 1 0 15 1 0 4 2 0 11 9 0 16 24 19 16 8 6 5 0 1 17 chain 5452 chr8 145138636 + 107053965 107054028 L1MB8 1703 + 1168 1231 83449 63 chain 88979 chr8 145138636 + 107110269 107111359 L1P3 4156 + 3041 4136 19861 45 0 5 455 0 4 276 1 0 281 2 0 7 2 1 21 chain 26277 chr8 145138636 + 107182847 107183160 L1PA8A 6298 + 5977 6291 47308 206 0 1 107 chain 30637 chr8 145138636 + 107203170 107203536 L1P2 5180 + 1609 1975 41438 366 chain 540408 chr8 145138636 + 107240608 107246603 L1PA3long 6157 + 0 6147 1313 152 0 1 587 0 2 35 1 129 256 0 3 3189 0 4 1041 0 1 39 0 13 695 chain 4999 chr8 145138636 + 107254408 107254488 MADE1 96 - 0 96 85663 36 12 28 32 chain 70995 chr8 145138636 + 107470689 107471548 L1PA7 6471 + 5603 6453 23760 18 1 0 170 0 1 180 0 1 221 9 0 114 8 7 138 chain 231730 chr8 145138636 + 107473908 107476589 L1PA5 6144 + 3452 6135 8698 307 0 2 42 0 1 375 0 1 697 1 0 270 0 1 309 1 2 536 5 4 76 2 0 60 chain 7724 chr8 145138636 + 107545957 107546064 L1PA10 4194 + 4046 4150 75553 68 5 2 34 chain 66015 chr8 145138636 + 107554808 107555569 L1PA5 6144 + 5377 6137 24952 626 2 1 133 chain 20921 chr8 145138636 + 107609580 107609813 L1PA3long 6157 + 5919 6152 55235 233 chain 22401 chr8 145138636 + 107617415 107617776 Tigger4b 360 + 0 360 53271 12 14 31 11 16 0 206 1 0 35 6 12 9 7 0 44 chain 3566 chr8 145138636 + 107656168 107656209 LTR12C 1709 + 1118 1159 94696 41 chain 4209 chr8 145138636 + 107656344 107656412 LTR12C 1709 + 732 837 90064 17 9 46 42 chain 6482 chr8 145138636 + 107870749 107870922 L1PREC2 3366 + 2888 3040 79403 17 5 0 11 9 6 29 4 1 11 20 12 27 11 9 29 chain 5683 chr8 145138636 + 107896360 107896484 MER58B 340 + 203 332 82420 38 38 43 48 chain 4476 chr8 145138636 + 107915755 107915882 HUERS-P1-int 2401 + 427 530 88463 9 1 0 33 2 1 11 2 0 7 40 20 22 chain 76392 chr8 145138636 + 107917645 107918855 MER41-int 2638 + 824 2033 22467 117 1 0 4 0 1 14 0 2 43 0 3 58 0 10 70 21 20 135 1 6 13 4 0 3 2 0 27 2 0 5 23 30 14 2 0 158 6 7 49 49 52 4 1 0 255 1 0 49 19 0 34 1 0 8 1 2 16 chain 76486 chr8 145138636 + 107921556 107922702 L1PA13 3608 + 2319 3464 22439 16 1 0 16 11 7 43 0 8 4 1 2 8 2 0 72 1 2 36 0 1 4 6 5 70 1 0 53 0 3 17 0 2 326 5 4 58 0 3 51 1 0 30 1 0 17 0 14 65 9 0 17 3 1 60 1 0 57 2 0 5 8 6 42 2 0 4 2 0 11 2 0 5 chain 40253 chr8 145138636 + 107934672 107935231 MER11B 1079 + 0 580 34476 200 3 5 20 0 5 124 3 6 65 12 11 81 0 4 15 17 25 19 chain 90284 chr8 145138636 + 107978420 107979417 L1PA4 6152 + 4881 5877 19627 33 1 0 963 chain 33188 chr8 145138636 + 107990342 107990907 L1PA13 3608 + 3008 3548 39367 117 4 3 32 1 0 41 4 5 54 0 1 13 2 0 62 1 0 55 8 5 47 2 0 5 2 0 19 1 0 16 0 3 11 42 28 10 1 0 6 2 0 7 chain 3572 chr8 145138636 + 108007461 108007504 L1MC4 1079 + 596 639 94644 43 chain 113280 chr8 145138636 + 108013493 108014855 L1PA7 6471 + 5102 6470 16635 344 0 1 155 0 4 8 0 3 46 0 1 45 1 2 52 2 0 191 5 4 350 8 7 155 chain 17678 chr8 145138636 + 108021698 108021935 L1PA8 5853 + 5619 5847 59031 63 1 0 8 6 0 50 2 1 19 1 0 87 chain 12180 chr8 145138636 + 108036205 108036363 Tigger1 2417 + 1099 1258 66513 20 1 2 137 chain 14329 chr8 145138636 + 108049088 108049251 L1PA6 6164 + 5995 6158 63151 163 chain 164504 chr8 145138636 + 108058174 108060012 L1PA3long 6157 + 4319 6157 11456 45 0 2 231 0 1 603 1 0 183 2 1 5 1 0 767 chain 375932 chr8 145138636 + 108060051 108064339 L1PA5 6144 + 0 5296 5551 89 0 996 281 0 1 66 1 0 1737 1 0 316 0 4 184 3 4 4 0 1 505 0 1 398 0 1 39 0 1 29 0 1 532 1 0 78 0 4 24 chain 181264 chr8 145138636 + 108087605 108089733 L1PA7 6471 + 4321 6457 10536 150 1 7 186 0 3 158 1 0 160 2 0 210 0 4 40 0 1 374 0 3 601 6 0 239 chain 517711 chr8 145138636 + 108103487 108111240 L1PA7 6471 + 3 6459 2381 856 24 0 489 0 1 205 331 0 199 1 0 32 5 4 205 6 7 34 1 0 82 5 6 138 1 0 60 0 2 134 4 5 57 0 2 119 35 19 166 0 4 74 0 2 367 2 4 733 0 3 597 0 1 9 0 1 109 0 6 249 0 1 138 5 0 7 1 6 392 959 0 93 1 0 41 0 1 37 1 4 155 0 3 458 5 6 54 0 2 77 chain 338017 chr8 145138636 + 108123480 108127540 L1PA7 6471 + 2389 6470 6106 250 0 2 165 0 1 258 0 1 932 0 1 15 1 2 490 0 3 159 0 4 159 0 1 147 0 1 528 1 2 11 0 3 26 0 1 773 0 1 145 chain 290366 chr8 145138636 + 108149749 108153781 L1PA10 4194 + 175 4161 7119 11 1 0 4 1 0 9 3 0 8 22 16 9 2 0 9 1 0 9 1 0 21 6 4 11 1 0 8 76 48 11 1 0 10 1 0 11 5 0 6 1 0 15 7 0 8 1 0 78 11 9 797 0 5 78 0 4 329 1 3 54 1 0 13 3 4 13 5 4 4 0 1 75 0 3 119 16 29 487 1 0 118 10 6 24 21 23 44 13 7 349 8 6 46 0 2 615 1 0 31 5 12 36 0 1 5 4 1 5 0 1 184 0 1 53 7 5 29 3 0 34 1 0 11 chain 507528 chr8 145138636 + 108166801 108172413 L1PA3long 6157 + 547 6157 2869 1284 0 1 377 1 0 554 0 1 1182 0 1 694 1 0 1189 3 0 327 chain 13867 chr8 145138636 + 108266310 108266482 Tigger3a 397 + 158 332 63771 159 0 2 13 chain 25294 chr8 145138636 + 108334581 108335013 Tigger2 2703 + 2272 2703 48794 28 9 0 78 14 31 58 1 0 57 4 0 20 0 1 39 8 13 62 36 26 18 chain 8486 chr8 145138636 + 108352561 108352685 L1M1 2793 + 843 964 73702 50 5 3 6 1 0 62 chain 42582 chr8 145138636 + 108353163 108354116 L1MA2 4263 + 3496 4111 33014 71 1 0 17 7 3 75 1 0 144 3 0 125 356 34 93 7 0 16 0 1 29 1 0 7 chain 5626 chr8 145138636 + 108372913 108372994 Charlie4a 502 + 306 384 82680 32 3 0 46 chain 4280 chr8 145138636 + 108410780 108410859 MER3 215 + 129 215 89627 26 6 0 8 9 22 30 chain 33083 chr8 145138636 + 108427292 108427741 MLT2A1 477 + 0 477 39451 18 1 0 117 3 0 34 4 1 9 0 1 199 9 43 55 chain 91757 chr8 145138636 + 108551728 108552990 L1PREC2 3366 + 1591 2864 19376 99 1 4 12 0 2 62 0 1 146 4 6 97 7 2 189 11 12 358 0 2 130 1 0 4 2 3 32 2 0 7 0 11 36 1 0 16 0 1 27 7 3 11 chain 453776 chr8 145138636 + 108590388 108596204 L1PA8 5853 + 50 5853 4289 22 2 0 10 1 0 13 49 13 79 0 1 109 23 11 61 0 1 40 4 8 115 2 3 93 0 2 506 0 3 67 4 0 6 4 8 115 0 4 118 1 2 5 1 0 441 0 2 118 1 0 121 3 5 65 0 1 204 0 1 232 0 4 362 0 2 162 2 0 106 3 0 351 0 1 5 2 1 65 0 1 137 5 7 176 5 6 68 0 1 365 0 1 221 0 1 197 4 3 104 9 7 290 0 12 134 1 0 50 0 7 49 0 1 10 1 0 46 2 0 68 4 3 13 7 6 46 1 0 16 1 0 93 chain 6368 chr8 145138636 + 108648439 108648517 MLT1D 503 + 20 98 79782 78 chain 23684 chr8 145138636 + 108663057 108663457 L1PA11 4918 + 4136 4507 51299 98 28 28 20 29 0 48 3 7 58 2 1 11 3 1 22 0 2 42 2 0 14 1 0 19 chain 149723 chr8 145138636 + 108679877 108681529 L1PA4 6152 + 3327 5002 12368 197 0 22 540 0 1 915 chain 28943 chr8 145138636 + 108707017 108707342 L1PA6 6164 + 5837 6162 43416 325 chain 28694 chr8 145138636 + 108745676 108746133 LTR2 463 + 0 463 43809 13 0 1 175 1 2 4 1 0 17 17 17 38 12 16 13 2 0 5 0 2 56 38 39 65 chain 23877 chr8 145138636 + 108788691 108788989 AluSc 308 + 12 308 50983 193 0 1 38 3 0 64 chain 32066 chr8 145138636 + 108832118 108832849 MER57A1 433 + 0 433 40294 273 310 0 91 0 12 57 chain 31906 chr8 145138636 + 108862393 108862741 L1PA3long 6157 + 5808 6156 40409 348 chain 549675 chr8 145138636 + 108930482 108936584 L1PA3long 6157 + 2 6157 770 503 2 45 865 0 5 1276 0 1 1121 9 6 903 0 4 1030 0 3 393 chain 29682 chr8 145138636 + 108947071 108947387 AluYb9 318 + 0 315 42390 123 1 0 192 chain 26765 chr8 145138636 + 108968517 108968897 THE1C 375 + 0 375 46593 125 13 10 49 4 3 38 0 1 33 1 0 91 1 0 25 chain 51725 chr8 145138636 + 108990325 108991016 L1PA8 5853 + 5172 5852 28960 66 7 0 326 1 0 44 2 0 71 1 0 14 16 2 7 0 16 18 7 6 18 1 0 92 chain 9491 chr8 145138636 + 109035030 109035177 MER20 218 + 47 199 71494 21 22 26 67 0 1 37 chain 63536 chr8 145138636 + 109057131 109057961 L1PA8 5853 + 5038 5853 25518 49 1 0 153 0 3 54 0 1 56 21 0 107 0 2 101 1 0 40 7 5 46 0 8 16 1 0 9 1 0 54 1 0 18 1 0 93 chain 58833 chr8 145138636 + 109207635 109208295 L1PA4 6152 + 5482 6143 26727 335 0 1 325 chain 89975 chr8 145138636 + 109213399 109214406 LTR13 1007 + 0 1007 19690 1007 chain 252898 chr8 145138636 + 109219501 109223478 MER61-int 3695 + 0 3695 8158 26 0 4 7 20 10 223 3 2 32 0 1 105 1 2 56 11 0 73 1 5 70 29 0 21 10 106 92 0 1 12 0 5 152 6 14 74 2 1 26 0 8 169 26 0 482 0 1 7 1 0 67 0 2 115 0 1 159 10 1 48 5 8 121 302 2 156 0 18 9 21 1 30 23 25 53 8 6 159 1 0 81 29 13 12 2 3 23 6 5 248 24 4 20 1 2 173 8 7 148 24 28 44 5 1 18 9 8 42 0 11 36 chain 3430 chr8 145138636 + 109262580 109262620 Charlie1a 1436 + 502 542 95822 40 chain 21628 chr8 145138636 + 109282583 109282839 L1PA7 6471 + 6210 6466 54315 92 1 2 148 1 0 14 chain 5288 chr8 145138636 + 109288665 109288731 MER41B 635 + 481 547 84254 66 chain 24711 chr8 145138636 + 109301076 109301483 LTR7B 505 + 0 491 49709 106 1 11 54 19 87 31 36 1 21 0 41 16 0 1 72 18 17 33 chain 15644 chr8 145138636 + 109304267 109304448 HERVH-int 3825 + 3644 3825 61478 181 chain 26271 chr8 145138636 + 109307033 109307459 LTR7B 505 + 0 505 47317 105 0 10 56 18 86 33 39 0 21 1 42 88 16 15 49 chain 282536 chr8 145138636 + 109307459 109311926 L1PB1 5432 + 1276 5420 7355 11 0 1 116 4 11 129 4 7 21 0 12 53 0 1 380 0 146 34 0 1 29 1 0 39 0 1 227 3 0 115 368 236 593 0 1 31 0 3 138 1 0 120 1 0 4 19 1 18 1 0 70 0 4 139 6 14 118 1 0 255 0 2 85 4 3 154 0 15 6 1 0 37 318 0 56 0 3 53 3 0 245 0 2 35 1 2 50 3 0 14 3 0 21 1 0 9 1 0 11 4 0 9 2 0 44 0 1 7 1 0 17 1 0 44 1 0 16 1 0 4 18 8 11 15 0 8 9 6 13 2 0 24 1 0 21 1 0 13 1 0 6 3 0 10 chain 30267 chr8 145138636 + 109433885 109434257 L1PA7 6471 + 6083 6465 41792 183 0 13 180 3 0 6 chain 8003 chr8 145138636 + 109491187 109491374 MER3 215 + 18 190 74880 45 17 16 32 9 0 30 11 0 7 13 19 23 chain 12994 chr8 145138636 + 109546561 109546743 MER30 238 + 37 238 65120 70 4 0 7 6 29 95 chain 5350 chr8 145138636 + 109624815 109624912 MER58A 224 + 49 143 83957 62 11 10 15 2 0 7 chain 38602 chr8 145138636 + 109630009 109630436 L1PA2 6032 + 5604 6029 35639 4 0 1 405 3 0 15 chain 56542 chr8 145138636 + 109641787 109642448 L1PA7 6471 + 5794 6463 27414 5 1 0 403 1 0 51 0 9 58 0 1 142 chain 305305 chr8 145138636 + 109672233 109675976 L1P3 4156 + 0 4139 6715 251 1 0 68 5 4 79 2 0 6 4 6 932 0 3 342 1 4 329 6 2 230 0 2 143 4 396 296 0 4 486 0 2 235 8 7 280 2 0 9 2 1 22 chain 119202 chr8 145138636 + 109682126 109683694 THE1C-int 1605 + 0 1605 15655 13 2 4 428 4 11 296 5 4 192 1 0 4 8 9 49 0 24 36 13 14 55 3 7 459 chain 15620 chr8 145138636 + 109784088 109784303 L1PA10 4194 + 3949 4161 61506 156 13 11 34 1 0 11 chain 3071 chr8 145138636 + 109788501 109788551 Tigger3b 1229 + 504 552 99098 11 5 3 34 chain 27504 chr8 145138636 + 109789920 109790358 L1MA1 4479 + 3767 4190 45577 59 1 0 20 2 0 13 1 0 18 0 7 63 1 0 5 3 0 47 0 1 71 7 6 15 1 0 15 2 0 33 3 2 9 1 0 7 4 2 12 7 0 18 chain 22260 chr8 145138636 + 109791355 109791602 L1PA5 6144 + 5889 6135 53460 196 1 0 50 chain 83553 chr8 145138636 + 109821844 109822771 L1PA3long 6157 + 3207 4134 20902 927 chain 293703 chr8 145138636 + 109826694 109829932 L1PA3long 6157 + 2917 6155 7022 266 0 1 152 1 0 2819 chain 100408 chr8 145138636 + 109837331 109838513 L1PA7 6471 + 5278 6470 18248 273 0 9 61 1 0 77 0 2 770 chain 553388 chr8 145138636 + 109858639 109864778 L1PA3long 6157 + 6 6157 526 642 0 1 899 0 11 4598 chain 129161 chr8 145138636 + 109945902 109947460 THE1A-int 1579 + 0 1579 14124 131 1 22 347 1 0 836 0 1 242 chain 3226 chr8 145138636 + 109979376 109979450 MIRb 242 + 107 182 97693 36 24 25 14 chain 3504 chr8 145138636 + 110010156 110010196 THE1D 372 + 332 372 95213 40 chain 55237 chr8 145138636 + 110035898 110036516 L1PA3long 6157 + 5524 6142 27797 618 chain 185084 chr8 145138636 + 110060795 110063661 HUERS-P2-int 2744 + 2 2742 10333 14 6 1 14 2 0 20 0 1 14 0 2 18 2 0 5 1 0 53 6 3 11 39 32 75 3 0 4 1 0 10 136 57 19 0 8 69 10 9 20 13 0 8 3 11 17 3 0 4 2 0 158 0 1 90 7 8 177 35 34 37 0 1 794 1 0 559 7 5 72 7 6 68 2 0 33 3 0 35 2 1 12 1 0 6 1 0 4 1 0 5 13 12 36 3 0 34 1 0 4 1 0 5 9 5 12 13 11 16 chain 110699 chr8 145138636 + 110068096 110069324 L1PA3long 6157 + 4924 6157 16980 161 0 1 946 0 2 22 0 2 99 chain 22027 chr8 145138636 + 110106187 110106492 L1PA13 3608 + 3165 3479 53797 109 3 1 60 1 0 56 8 5 47 0 16 9 1 0 11 chain 42824 chr8 145138636 + 110120639 110121179 LTR12_ 688 + 0 688 32874 25 1 0 33 0 45 39 1 2 240 0 103 201 chain 151126 chr8 145138636 + 110152151 110153812 L1PA3long 6157 + 4291 5957 12279 414 0 1 604 0 4 643 chain 70459 chr8 145138636 + 110187705 110188543 L1PA5 6144 + 5303 6141 23878 467 9 9 362 chain 7539 chr8 145138636 + 110246889 110247013 LTR77 607 + 382 503 76033 22 16 13 32 0 1 4 1 0 49 chain 162581 chr8 145138636 + 110260055 110261937 L1PA5 6144 + 4250 6138 11570 381 0 5 661 10 14 661 1 0 4 8 6 156 chain 8783 chr8 145138636 + 110376815 110376919 THE1B-int 1605 + 1495 1599 73034 104 chain 6798 chr8 145138636 + 110395345 110395454 MLT2A2 560 + 279 502 78334 23 2 111 41 2 7 41 chain 52603 chr8 145138636 + 110428919 110429494 L1PA3long 6157 + 5569 6144 28702 575 chain 19826 chr8 145138636 + 110481924 110482222 THE1D 372 + 47 347 56647 22 9 10 83 29 31 32 1 0 122 chain 157036 chr8 145138636 + 110514670 110516691 L1PA8 5853 + 3836 5853 11938 22 1 5 9 4 0 152 9 8 22 0 4 271 7 5 69 0 1 606 0 3 120 2 0 340 2 1 90 1 0 44 2 0 70 2 1 61 2 1 19 2 1 92 chain 25458 chr8 145138636 + 110530067 110530413 THE1B 368 + 7 368 48542 37 14 29 23 0 1 75 1 0 196 chain 10283 chr8 145138636 + 110683516 110683735 L1PB1 5432 + 5221 5413 69844 16 1 0 44 1 0 15 1 0 4 20 9 18 13 5 14 2 0 24 1 0 19 5 4 11 1 0 9 chain 44130 chr8 145138636 + 110746024 110746951 MER11C 1089 + 0 1073 32063 55 0 91 106 7 10 57 1 18 123 18 17 22 302 337 53 0 1 183 chain 17812 chr8 145138636 + 110761812 110762140 L1PREC2 3366 + 2641 2947 58876 19 1 0 92 2 0 54 1 0 44 1 0 4 3 0 7 62 49 12 2 0 12 1 2 11 chain 45828 chr8 145138636 + 110777530 110778144 L1PA10 4194 + 3544 4161 31146 157 1 0 4 0 1 14 0 4 287 0 1 33 0 1 70 3 0 6 0 1 27 1 0 11 chain 34847 chr8 145138636 + 110820767 110821228 L1P3 4156 + 3680 4139 38126 63 0 1 254 2 1 18 0 1 89 2 0 7 2 1 24 chain 444807 chr8 145138636 + 110880982 110886547 HERVL-int 5654 + 0 5654 4476 56 20 18 460 0 3 81 0 9 77 3 5 203 0 2 224 0 4 360 1 2 233 0 4 405 0 25 193 0 1 1061 1 3 758 1 23 214 0 1 602 4 0 198 6 4 183 0 1 106 4 0 66 9 33 36 chain 11781 chr8 145138636 + 110887068 110887215 HERVL-int 5654 + 4777 4924 67250 147 chain 15936 chr8 145138636 + 110888535 110888909 MER21A 919 + 28 539 61110 47 30 48 5 2 0 30 75 64 23 22 154 39 2 0 5 0 2 94 chain 90170 chr8 145138636 + 110923976 110924982 L1PA4 6152 + 4331 5337 19653 1006 chain 505798 chr8 145138636 + 110952164 110957638 L1PA2 6032 + 538 6025 2937 3645 0 13 1829 chain 13626 chr8 145138636 + 110984264 110984472 L1MB5 1630 + 1177 1383 64127 13 24 22 171 chain 4738 chr8 145138636 + 110992369 110992454 MER67D 511 + 0 82 87025 22 16 13 47 chain 22899 chr8 145138636 + 111014733 111016482 THE1B 368 + 0 356 52515 44 10 25 45 1 0 60 1 0 20 1408 3 96 1 0 63 chain 6261 chr8 145138636 + 111014915 111014989 THE1B 368 + 197 271 80122 74 chain 8043 chr8 145138636 + 111016139 111016300 THE1B 368 + 0 174 74770 44 24 39 34 9 7 50 chain 72831 chr8 145138636 + 111100436 111101394 LTR13_ 950 + 0 950 23350 68 8 12 314 3 2 211 14 3 35 1 0 109 2 1 21 7 10 134 1 0 30 chain 4703 chr8 145138636 + 111118608 111118682 MLT2C1 407 + 26 101 87251 52 7 8 15 chain 41849 chr8 145138636 + 111156892 111157482 L1PREC2 3366 + 2211 2799 33457 29 1 0 4 1 2 20 20 19 428 1 2 37 2 0 47 chain 170471 chr8 145138636 + 111171446 111173499 L1PA7 6471 + 4297 6364 11084 662 6 0 242 0 19 401 1 0 281 6 11 124 7 8 252 5 1 66 chain 375691 chr8 145138636 + 111202400 111207074 L1PA7 6471 + 1784 6469 5561 89 0 1 227 0 1 163 16 14 116 0 1 72 1 0 149 0 1 8 0 1 4 4 1 100 1 0 20 1 19 327 0 3 383 2 1 350 0 1 174 1 4 52 3 4 320 0 1 758 1 2 410 6 0 58 3 2 79 0 2 321 0 5 7 20 6 428 chain 40460 chr8 145138636 + 111218924 111219458 LTR19B 566 + 0 566 34340 89 8 0 316 13 16 58 9 46 41 chain 187617 chr8 145138636 + 111232614 111235261 MER4-int 2692 + 4 2692 10233 7 1 0 25 2 0 53 0 1 9 2 0 7 17 14 340 2 3 144 0 1 4 1 4 98 5 4 47 14 17 281 1 4 35 1 0 293 0 16 17 0 18 15 10 16 73 0 4 119 1 0 11 1 0 46 0 2 7 1 0 15 28 33 102 1 0 116 11 9 249 3 1 16 14 8 146 0 1 179 11 12 66 chain 18290 chr8 145138636 + 111350940 111351305 THE1D 372 + 0 372 58374 144 94 102 24 4 5 32 7 5 60 chain 4549 chr8 145138636 + 111418034 111418150 L1PB1 5432 + 5315 5422 88066 7 2 0 10 1 0 14 2 0 24 9 8 14 1 0 6 1 2 6 2 0 12 1 0 4 chain 93500 chr8 145138636 + 111423334 111424566 THE1B-int 1605 + 339 1600 19114 94 0 25 224 1 0 87 1 0 5 11 12 240 4 8 448 9 10 108 chain 10263 chr8 145138636 + 111431767 111431882 L1PA7 6471 + 6353 6468 69873 115 chain 105513 chr8 145138636 + 111495734 111496994 L1PA7 6471 + 5176 6468 17618 151 0 14 41 0 9 383 0 12 433 2 0 138 1 0 111 chain 164629 chr8 145138636 + 111509447 111511363 L1PA5 6144 + 3953 5880 11444 8 0 1 116 4 16 250 0 4 794 13 0 149 0 4 139 1 4 442 chain 67090 chr8 145138636 + 111628186 111629296 L1PB1 5432 + 4329 5417 24686 224 13 22 51 2 0 43 0 1 109 2 3 20 1 9 60 1 0 232 3 0 14 64 53 50 2 1 15 1 0 44 1 0 12 59 43 11 2 0 24 1 0 21 1 0 13 1 0 13 chain 380274 chr8 145138636 + 111632089 111636262 L1PA3long 6157 + 1980 6157 5479 3069 0 3 414 0 1 690 chain 15015 chr8 145138636 + 111643311 111643563 LTR12C 1709 + 945 1203 62252 163 41 10 15 6 43 27 chain 3317 chr8 145138636 + 111643564 111643682 LTR12C 1709 + 837 1037 69560 35 65 147 18 chain 3876 chr8 145138636 + 111643618 111643664 LTR12C 1709 + 654 700 83736 46 chain 52423 chr8 145138636 + 111654733 111655317 L1PA5 6144 + 5549 6132 28750 261 0 1 160 2 0 161 chain 2935 chr8 145138636 + 111665822 111665858 MER31B 477 + 0 36 100542 36 chain 21104 chr8 145138636 + 111762615 111762878 L1PA7 6471 + 6218 6469 55006 64 6 0 174 6 0 13 chain 31755 chr8 145138636 + 111764567 111764957 L1PA7 6471 + 6080 6470 40533 228 14 14 148 chain 4062 chr8 145138636 + 111831607 111831656 MADE1 96 + 47 96 91004 49 chain 41818 chr8 145138636 + 111883086 111883650 MER41A 554 + 0 554 33473 248 14 15 233 19 8 50 chain 26200 chr8 145138636 + 111913949 111914302 THE1A 353 + 0 353 47420 47 0 1 46 1 0 17 0 2 6 8 6 228 chain 36341 chr8 145138636 + 111931111 111931579 LTR3A 482 + 0 478 37179 156 7 16 281 0 1 24 chain 131356 chr8 145138636 + 111937916 111939411 L1PA5 6144 + 4629 6126 13885 22 3 1 645 0 4 825 chain 493710 chr8 145138636 + 111985295 111991583 L1PA7 6471 + 3 6342 3316 95 5 7 48 3 0 6 11 14 203 0 11 24 0 1 371 0 2 494 6 7 121 17 18 4 1 0 280 5 6 42 9 0 9 6 16 16 1 0 400 0 5 25 1 0 404 0 3 174 19 28 589 2 4 41 0 4 28 1 0 39 0 9 60 0 1 24 0 1 193 10 0 100 15 16 64 0 1 367 1 0 4 0 1 283 0 8 124 15 5 317 0 1 91 0 1 101 0 1 87 0 2 210 0 3 83 1 4 638 chain 29977 chr8 145138636 + 112073206 112073527 AluYb8 318 + 0 318 42079 132 3 0 186 chain 260432 chr8 145138636 + 112084543 112087786 L1PA7 6471 + 3034 6296 7958 450 1 2 8 1 0 55 0 4 26 0 2 244 8 5 179 1 2 87 0 1 85 1 0 90 1 0 489 3 12 60 0 1 113 1 0 163 0 4 80 0 1 8 1 0 416 7 10 71 2 0 6 8 10 578 chain 11895 chr8 145138636 + 112087805 112087949 L1PA7 6471 + 6314 6461 67020 137 0 3 7 chain 145777 chr8 145138636 + 112094643 112096321 L1PA5 6144 + 4458 6143 12629 160 6 4 139 1 2 512 0 4 18 0 4 842 chain 2786 chr8 145138636 + 112114800 112114844 LTR8 732 + 0 59 101721 23 1 16 20 chain 12862 chr8 145138636 + 112119526 112119673 L1PA5 6144 + 5343 5490 65324 147 chain 58030 chr8 145138636 + 112119673 112120326 L1PA5 6144 + 5491 6144 26955 653 chain 107739 chr8 145138636 + 112132510 112133809 LTR12C 1709 + 0 1709 17356 262 0 1 311 7 6 70 0 278 184 9 6 106 0 4 286 1 132 63 chain 294032 chr8 145138636 + 112183652 112187264 L1PA5 6144 + 2038 5374 7009 772 0 1 252 280 0 88 1 0 7 1 0 121 0 1 2017 0 4 73 chain 299773 chr8 145138636 + 112196277 112199862 HERVH-int 3825 + 0 3825 6839 333 1 0 199 5 0 38 1 0 10 1 0 10 4 0 12 6 0 10 9 26 19 23 22 19 2 1 10 0 2 2 3 0 43 0 1 7 0 2 12 0 1 21 0 1 777 1 0 108 3 30 1370 0 3 31 8 218 487 chain 307888 chr8 145138636 + 112217832 112222033 L1PA7 6471 + 3 6297 6663 163 2 3 239 1 2 39 10 11 271 1 0 103 0 3 267 0 7 64 0 1 50 0 2356 215 0 9 55 13 23 19 0 1 34 0 2 70 1 0 561 1 0 7 0 1 239 0 4 844 0 1 131 300 0 102 6 2 211 0 3 19 3 4 67 2 0 91 chain 23521 chr8 145138636 + 112227768 112228047 AluY 311 + 8 288 51551 124 0 1 155 chain 31607 chr8 145138636 + 112238889 112239297 MER57A1 433 + 0 410 40655 61 1 2 222 1 2 123 chain 12636 chr8 145138636 + 112257116 112257305 L1PA7 6471 + 4316 4482 65740 119 25 2 45 chain 121456 chr8 145138636 + 112257305 112258756 L1PA7 6471 + 4483 5939 15268 466 0 1 396 0 1 273 1 4 315 chain 4482 chr8 145138636 + 112339154 112339314 MER51A 677 + 176 308 88429 16 20 0 7 10 0 36 23 6 12 20 39 16 chain 113200 chr8 145138636 + 112356948 112358446 THE1B-int 1605 + 0 1605 16652 430 1 26 280 14 78 335 2 12 36 1 0 4 15 20 201 2 6 177 chain 18299 chr8 145138636 + 112366697 112366958 HSMAR2 1300 + 1009 1276 58361 60 1 0 85 1 6 63 0 1 26 3 4 22 chain 28919 chr8 145138636 + 112369465 112369878 L1PA8 5853 + 5447 5853 43453 117 1 0 33 13 11 71 1 0 8 7 6 47 2 1 13 10 9 90 chain 11902 chr8 145138636 + 112484698 112484897 Tigger4a 237 + 0 176 67004 19 8 9 29 0 1 18 13 0 75 1 0 15 11 0 10 chain 280355 chr8 145138636 + 112533979 112537179 L1PA3long 6157 + 2858 6157 7410 29 51 142 338 10 4 665 0 10 1259 2 3 189 0 3 657 chain 554853 chr8 145138636 + 112594005 112600030 L1PA2 6032 + 1 6027 422 566 0 4 139 1 0 4469 0 1 837 3 0 10 chain 76773 chr8 145138636 + 112662025 112662891 L1PA3long 6157 + 4499 5364 22379 142 1 0 723 chain 12487 chr8 145138636 + 112694833 112695125 L1P2 5180 + 4 294 66006 91 91 90 62 18 17 30 chain 196132 chr8 145138636 + 112695409 112697669 L1PA5 6144 + 3809 6065 9840 535 0 4 138 0 4 887 1 0 467 23 12 125 1 6 8 5 0 70 chain 50276 chr8 145138636 + 112698783 112699434 LTR12 884 + 0 884 29457 74 0 132 142 24 0 20 0 22 160 0 103 231 chain 349958 chr8 145138636 + 112713396 112718078 L1PA8 5853 + 1160 5853 5912 99 0 1 118 7 10 161 1 0 151 1 0 5 0 2 44 6 7 254 9 6 229 0 1 198 1 3 19 6 5 63 0 2 63 2 0 233 4 6 48 2 1 24 0 1 85 17 16 146 11 12 48 4 3 759 0 1 144 12 13 176 27 25 376 0 7 284 1 0 8 0 1 164 0 5 9 0 1 367 1 0 45 2 0 70 1 0 9 1 0 52 2 1 19 1 0 93 chain 27678 chr8 145138636 + 112747693 112747986 AluYd8 298 + 0 293 45355 293 chain 14913 chr8 145138636 + 112755394 112755641 THE1C 375 + 144 373 62373 9 16 0 33 10 9 156 7 6 16 chain 85015 chr8 145138636 + 112772173 112773142 LTR5_Hs 974 + 0 969 20615 969 chain 23472 chr8 145138636 + 112869467 112869752 L1PA8 5853 + 5277 5564 51631 29 1 3 255 chain 3690 chr8 145138636 + 112869753 112869797 L1PA8 5853 + 5564 5608 93675 44 chain 9997 chr8 145138636 + 112869799 112869931 L1PA8 5853 + 5608 5740 70431 63 2 0 5 0 1 10 1 2 51 chain 7623 chr8 145138636 + 112869954 112870040 L1PA8 5853 + 5761 5847 75817 86 chain 217524 chr8 145138636 + 112876093 112880076 L1PA7 6471 + 3721 6466 9108 21 6 7 260 2 0 79 3 2 203 0 75 592 308 0 101 1 0 355 0 1 374 0 1 344 0 1 22 1005 0 307 chain 3188 chr8 145138636 + 112878828 112878867 MER11C 1089 + 152 191 98010 39 chain 14793 chr8 145138636 + 112929226 112929387 L1PA2 6032 + 5868 6029 62539 161 chain 5344 chr8 145138636 + 112962857 112962992 MER5A1 166 + 0 137 83987 19 23 24 30 22 23 41 chain 81058 chr8 145138636 + 113029150 113030347 L1PB 1623 + 411 1575 21420 65 9 8 22 0 4 141 17 17 510 3 1 16 7 10 102 4 0 139 1 0 7 2 1 30 1 0 5 3 0 6 85 58 22 chain 12695 chr8 145138636 + 113033616 113033769 THE1D-int 1627 + 1461 1614 65629 153 chain 148021 chr8 145138636 + 113087241 113088870 L1PA3long 6157 + 4529 6157 12479 653 1 0 975 chain 6704 chr8 145138636 + 113205450 113205552 Tigger3 1187 + 898 1120 78631 10 0 122 57 3 1 32 chain 154457 chr8 145138636 + 113269180 113270981 L1PA5 6144 + 4353 6139 12088 516 4 1 427 0 4 174 16 1 573 2 1 89 chain 150225 chr8 145138636 + 113282069 113284220 L1PB1 5432 + 3307 5420 12332 321 8 1 208 0 2 117 1 0 348 0 1 304 0 4 16 5 1 65 0 1 7 1 3 288 3 4 103 15 5 8 1 0 24 1 0 9 16 11 11 3 1 46 46 45 16 8 7 12 2 0 5 0 3 7 9 0 9 15 12 14 3 1 23 1 0 21 1 0 13 1 0 16 chain 49049 chr8 145138636 + 113295733 113296291 L1PA5 6144 + 5570 6128 29932 558 chain 209220 chr8 145138636 + 113302654 113304927 L1PA2 6032 + 3760 6032 9376 1379 1 0 893 chain 21637 chr8 145138636 + 113325253 113325598 THE1B 368 + 2 368 54306 42 0 15 48 1 10 27 55 51 92 0 1 80 chain 28590 chr8 145138636 + 113372651 113372955 AluYb8 318 + 0 303 43974 116 1 0 187 chain 38212 chr8 145138636 + 113452122 113452532 L1HS 6032 + 5621 6031 35900 410 chain 49604 chr8 145138636 + 113464660 113465368 L1PA8 5853 + 5151 5853 29723 26 19 18 352 0 2 12 2 1 46 2 0 69 3 2 14 10 9 38 2 1 19 2 1 92 chain 44933 chr8 145138636 + 113500000 113500589 L1P3 4156 + 3523 4107 31613 152 5 1 61 1 0 370 chain 23691 chr8 145138636 + 113601022 113601307 AluSc 308 + 23 308 51287 285 chain 226400 chr8 145138636 + 113610657 113613130 L1PA2 6032 + 2423 4898 8853 1526 1 0 190 0 3 756 chain 367049 chr8 145138636 + 113625828 113631235 L1PB1 5432 + 14 5427 5713 6 1 0 313 0 2 20 12 4 101 119 121 10 0 1 99 8 0 36 0 1 40 10 1 54 0 3 278 1 2 298 0 5 130 10 18 37 5 6 127 5 1 395 51 64 60 0 1 89 3 4 36 0 1 120 4 0 42 1 0 273 13 14 162 1 0 18 15 8 45 1 0 42 1 2 122 27 11 418 5 7 65 2 6 187 0 5 49 0 4 51 5 0 368 0 1 66 5 9 16 0 1 36 0 1 82 0 4 16 15 81 49 10 12 189 34 0 47 1 0 33 1 0 4 0 1 58 1 2 5 12 0 6 0 1 21 2 1 7 1 0 9 0 5 8 2 0 9 1 4 10 0 1 28 20 18 43 1 0 15 24 12 17 2 0 6 1 0 15 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 62783 chr8 145138636 + 113674351 113675026 L1PA2 6032 + 5357 6032 25687 675 chain 21654 chr8 145138636 + 113712997 113713265 L1PA7 6471 + 6195 6464 54284 113 7 8 148 chain 28551 chr8 145138636 + 113757391 113757743 THE1A 353 + 0 353 44031 84 0 1 268 chain 10332 chr8 145138636 + 113816991 113817114 L1PA6 6164 + 5876 5999 69728 123 chain 100498 chr8 145138636 + 113832514 113833718 L1PA7 6471 + 3354 4561 18236 856 0 2 19 0 1 329 chain 18632 chr8 145138636 + 113882393 113882639 LTR13A 966 + 715 966 57964 56 1 0 51 3 0 6 3 11 73 0 1 53 chain 16494 chr8 145138636 + 113935534 113935920 L1PB 1623 + 1234 1585 60386 44 4 5 24 4 0 135 141 111 22 2 0 10 chain 8929 chr8 145138636 + 113950885 113950994 HY1 111 + 0 109 72718 109 chain 3248 chr8 145138636 + 113979630 113979685 Charlie1a 1436 + 75 130 97499 4 1 0 13 3 4 34 chain 5339 chr8 145138636 + 114089299 114089358 L1PA6 6164 + 5939 5998 84005 59 chain 9649 chr8 145138636 + 114124459 114124575 MER85 139 + 0 126 71165 89 0 10 27 chain 54265 chr8 145138636 + 114133753 114134360 L1PA3long 6157 + 4377 4984 28131 607 chain 52775 chr8 145138636 + 114155853 114156517 L1PA8 5853 + 5193 5853 28649 331 0 2 38 1 0 44 2 0 71 1 0 61 2 1 19 1 0 93 chain 540107 chr8 145138636 + 114162725 114168762 L1PA3long 6157 + 1 6156 1334 7 3 0 144 0 1 436 3 0 179 8 136 2212 5 0 3040 chain 60551 chr8 145138636 + 114178776 114179429 L1PA2 6032 + 3829 4482 26215 653 chain 378411 chr8 145138636 + 114188652 114193110 L1PA6 6164 + 1685 6161 5512 524 3 5 44 1 3 70 1 3 840 1 3 12 0 8 325 2 1 431 0 1 592 6 0 492 1 0 627 0 4 285 0 9 32 0 1 156 5 0 8 chain 39809 chr8 145138636 + 114241603 114242054 LTR7 482 + 0 482 34817 264 0 31 187 chain 269290 chr8 145138636 + 114242056 114245367 HERVH-int 3825 + 0 3816 7724 212 0 11 309 5 0 32 8 7 9 1 0 9 25 15 10 0 17 25 1 0 30 22 1 34 22 9 49 1 0 220 0 290 396 4 31 1376 0 3 25 8 218 13 6 0 6 4 10 449 chain 36306 chr8 145138636 + 114246634 114247078 LTR7 482 + 0 477 37209 234 1 32 153 12 14 44 chain 9161 chr8 145138636 + 114259077 114259202 MER85 139 + 2 139 72206 94 0 15 5 3 0 23 chain 39584 chr8 145138636 + 114281697 114282146 LTR7 482 + 0 482 34968 261 0 31 94 0 2 94 chain 295431 chr8 145138636 + 114282148 114286019 HERVH-int 3825 + 0 3816 6963 212 0 11 301 64 0 8 5 0 38 1 0 9 2 1 24 69 0 15 1 0 12 3 0 7 21 0 19 22 0 41 44 1 11 66 4 4 1 0 11 2 1 49 1 0 444 15 0 111 0 1 350 4 31 182 0 3 105 0 4 1060 5 6 4 0 1 39 8 218 467 3 0 11 chain 2409 chr8 145138636 + 114282699 114282725 HERVH-int 3825 + 437 463 97553 26 chain 3647 chr8 145138636 + 114282812 114282881 HERVH-int 3825 + 635 683 83035 22 22 0 19 0 1 6 chain 2749 chr8 145138636 + 114283022 114283057 HERVH-int 3825 + 656 691 101978 35 chain 38442 chr8 145138636 + 114287284 114287733 LTR7 482 + 0 482 35763 247 1 32 111 0 2 90 chain 120546 chr8 145138636 + 114311169 114312595 LTR12C 1709 + 0 1709 15440 300 6 7 343 0 278 184 1 0 5 3 1 106 0 4 21 1 0 320 0 4 136 chain 27425 chr8 145138636 + 114324775 114325102 L1PA5 6144 + 5814 6144 45667 182 1 0 133 0 4 11 chain 44188 chr8 145138636 + 114363095 114363888 L1PB1 5432 + 4302 5103 32017 72 32 31 15 0 7 96 0 1 4 4 16 82 3 0 113 6 7 21 1 0 14 90 91 88 8 3 101 5 1 38 chain 3467 chr8 145138636 + 114386652 114386691 LTR12E 1234 + 789 828 95482 39 chain 18725 chr8 145138636 + 114487057 114487438 THE1D 372 + 0 372 57872 13 0 2 17 11 10 12 56 40 34 0 4 52 14 16 25 1 0 91 5 4 12 5 7 33 chain 13116 chr8 145138636 + 114487745 114487944 L1PB2 3958 + 3641 3838 64901 40 1 0 36 0 1 31 8 6 19 3 2 54 0 1 7 chain 550190 chr8 145138636 + 114504030 114510051 L1PA2 6032 + 0 6032 732 36 0 1 119 0 4 201 0 6 348 1 0 3044 0 1 2272 chain 7236 chr8 145138636 + 114526128 114526220 Tigger7 736 + 294 391 76843 12 0 5 80 chain 3475 chr8 145138636 + 114570340 114570377 MLT2A2 560 + 2 39 95417 37 chain 27730 chr8 145138636 + 114604524 114604853 L1PA7 6471 + 6132 6461 45278 329 chain 111288 chr8 145138636 + 114625557 114627315 L1PB1 5432 + 3740 5422 16906 72 0 7 10 13 9 147 0 1 4 25 8 10 9 10 186 0 2 333 6 7 59 0 4 23 10 6 261 0 4 199 149 71 47 2 1 15 1 0 28 2 3 7 0 1 7 0 15 30 2 0 5 1 0 14 3 1 23 1 0 21 1 0 13 1 0 18 chain 114101 chr8 145138636 + 114714660 114716000 L1PA6 6164 + 4819 6160 16542 496 1 0 699 5 7 139 chain 11381 chr8 145138636 + 114736229 114736501 L1PB1 5432 + 5176 5426 67948 44 2 1 16 4 3 41 1 0 15 73 58 16 1 0 22 1 0 12 1 0 13 1 0 9 chain 44622 chr8 145138636 + 114751486 114752127 L1PA8 5853 + 5241 5853 31779 12 1 2 307 1 0 47 2 0 69 3 1 8 2 1 66 34 7 47 12 15 30 chain 42589 chr8 145138636 + 114800855 114801349 MER9a1 513 + 15 513 33011 430 1 5 63 chain 11927 chr8 145138636 + 114841153 114841303 L1PA5 6144 + 5997 6141 66954 6 3 0 132 3 0 6 chain 39681 chr8 145138636 + 114848818 114849273 L1PA5 6144 + 5688 6144 34903 248 0 1 207 chain 36680 chr8 145138636 + 114857850 114858341 L1PA8 5853 + 5368 5853 36965 70 0 1 125 1 0 44 2 0 71 1 0 8 3 1 11 4 5 36 2 1 19 4 3 90 chain 26196 chr8 145138636 + 114966571 114966940 THE1B 368 + 0 368 47430 172 2 1 29 14 13 133 4 5 15 chain 36940 chr8 145138636 + 114981607 114982110 MER9a3 513 + 0 513 36782 17 0 2 158 0 1 80 18 0 16 0 18 4 1 0 96 8 15 26 0 1 79 chain 77061 chr8 145138636 + 114996322 114997432 MER11A 1151 + 0 1151 22302 85 0 91 51 0 4 63 4 0 37 1 3 109 0 1 94 0 1 142 5 6 148 24 56 11 14 0 18 2 0 4 72 0 43 0 1 183 chain 246769 chr8 145138636 + 115043471 115047393 L1PB1 5432 + 1913 5430 8309 73 15 10 49 0 1 10 19 18 139 12 8 200 5 1 72 6 0 6 4 1 82 0 5 60 43 2 7 0 8 177 8 6 50 0 1 175 4 8 81 302 0 551 2 0 5 3 5 388 0 1 181 0 2 189 6 7 124 13 6 71 1 2 13 1 0 51 6 14 16 0 1 13 4 1 10 18 27 160 0 2 100 44 7 4 1 0 24 1 0 9 17 12 8 2 0 49 6 5 10 8 7 58 3 0 7 14 5 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 2 0 10 chain 66344 chr8 145138636 + 115059764 115060577 L1PA7 6471 + 5652 6467 24860 48 1 4 433 5 6 54 1 2 260 3 0 8 chain 39064 chr8 145138636 + 115072047 115072550 LTR2 463 + 0 463 35310 341 52 11 16 0 1 94 chain 41716 chr8 145138636 + 115073037 115073577 MLT2A2 560 + 7 560 33541 196 0 1 195 3 14 47 2 3 97 chain 6620 chr8 145138636 + 115084240 115084413 MER58A 224 + 44 215 78901 39 70 69 50 1 0 13 chain 38508 chr8 145138636 + 115095433 115095900 MER41A 554 + 0 467 35702 467 chain 10028 chr8 145138636 + 115167690 115167816 Tigger3a 397 + 174 300 70362 126 chain 34366 chr8 145138636 + 115196272 115196740 HSMAR1 1287 + 0 460 38451 114 18 11 316 1 0 19 chain 22104 chr8 145138636 + 115211765 115212175 MSTC 436 + 18 430 53689 23 56 57 67 0 8 62 53 46 149 chain 40675 chr8 145138636 + 115212252 115212703 LTR7 482 + 0 482 34164 264 0 31 187 chain 292649 chr8 145138636 + 115212705 115216266 HERVH-int 3825 + 0 3825 7054 212 0 11 96 0 1 212 5 0 38 1 0 9 2 1 19 1 0 5 28 0 15 1 0 12 3 41 26 2 1 24 7 6 26 0 1 7 0 2 13 0 3 134 0 3 182 0 19 104 15 0 108 0 1 353 4 31 358 0 1 778 0 1 266 8 218 487 chain 40806 chr8 145138636 + 115217527 115217978 LTR7 482 + 0 482 34091 264 0 31 187 chain 331271 chr8 145138636 + 115226145 115230515 L1PA7 6471 + 2340 6428 6196 296 1 2 46 0 4 409 0 6 400 5 4 84 309 0 21 0 1 32 0 2 37 0 13 36 3 1 201 2 0 624 5 6 390 7 2 485 0 1 181 0 5 69 0 2 598 17 18 112 chain 27684 chr8 145138636 + 115233769 115234060 AluYa5 310 + 4 295 45343 291 chain 21489 chr8 145138636 + 115293459 115293838 THE1D 372 + 5 372 54524 8 0 2 41 22 13 35 0 1 85 0 4 8 31 37 42 22 6 85 chain 43091 chr8 145138636 + 115320496 115320972 L1PA5 6144 + 3819 4295 32720 476 chain 332069 chr8 145138636 + 115370380 115374484 L1P2 5180 + 2 4133 6182 110 12 11 20 0 11 72 3 0 21 1 0 247 6 6 8 1 0 7 1 0 220 0 1 4 1 0 47 8 23 117 0 25 132 0 3 1120 0 2 169 28 7 1302 2 1 445 chain 27095 chr8 145138636 + 115394324 115394678 THE1B 368 + 0 368 46132 44 8 23 110 1 0 191 chain 38498 chr8 145138636 + 115398781 115399227 L1PA5 6144 + 5695 6144 35709 313 0 1 121 1 3 11 chain 538756 chr8 145138636 + 115753167 115759173 L1PA3long 6157 + 4 6156 1410 148 0 1 587 0 2 35 1 129 222 0 1 419 0 1 91 0 12 71 0 1 98 0 1 691 1 0 1190 0 1 2435 1 0 16 chain 9988 chr8 145138636 + 115814947 115815054 LTR7Y 441 + 334 441 70447 107 chain 285207 chr8 145138636 + 115815054 115818568 HERVH-int 3825 + 0 3762 7279 529 14 8 33 1 0 10 1 0 8 0 1 15 29 0 15 0 37 42 2 1 56 0 1 7 0 2 13 0 3 52 0 3 122 0 1 318 47 29 379 4 31 299 0 10 828 0 1 216 9 11 39 8 218 253 3 9 162 chain 27539 chr8 145138636 + 115819013 115819406 LTR7Y 441 + 0 403 45530 253 71 81 69 chain 13775 chr8 145138636 + 115869044 115869259 THE1B 368 + 151 368 63917 18 1 0 44 28 31 124 chain 112588 chr8 145138636 + 115980405 115981752 L1PA7 6471 + 5088 6424 16735 413 2 0 120 1 0 689 6 0 10 8 6 98 chain 3137 chr8 145138636 + 116018094 116018172 MADE2 80 - 0 78 98489 23 31 31 24 chain 34596 chr8 145138636 + 116066548 116066994 MER57A1 433 + 0 433 38291 45 4 0 231 0 9 9 18 0 139 chain 178791 chr8 145138636 + 116070639 116073630 MER57-int 2662 + 50 2659 10644 14 67 49 75 0 5 120 2 0 38 0 1 18 0 1 5 1 0 127 0 4 75 0 1 90 21 16 180 4 12 65 1 0 132 3 0 5 0 1 2 0 10 211 1 2 34 0 1 25 8 10 57 346 0 223 1 0 18 5 0 221 7 11 29 1 3 5 2 0 112 2 1 21 0 3 249 3 0 10 1 0 82 18 12 38 12 7 23 27 13 26 2 0 6 1 0 34 1 0 9 5 0 33 9 6 28 chain 34243 chr8 145138636 + 116073635 116074089 MER57A1 433 + 0 433 38530 200 23 0 82 0 1 36 0 1 113 chain 42647 chr8 145138636 + 116135644 116136128 L1PA6 6164 + 5677 6161 32970 484 chain 8827 chr8 145138636 + 116140645 116140750 THE1B 368 + 2 107 72925 105 chain 39832 chr8 145138636 + 116181388 116181835 L1PA3long 6157 + 5710 6157 34792 447 chain 160439 chr8 145138636 + 116190195 116191944 L1PA3long 6157 + 4409 6157 11726 577 1 0 1171 chain 59021 chr8 145138636 + 116251078 116251860 LTR12D 1347 + 403 1334 26657 122 13 44 21 1 0 99 5 46 275 13 91 233 chain 11988 chr8 145138636 + 116281143 116281286 MER121 330 + 55 198 66856 143 chain 112524 chr8 145138636 + 116297044 116298390 SVA_B 1603 + 1 1597 16747 7 6 0 11 18 33 657 0 241 647 chain 132144 chr8 145138636 + 116317511 116319357 L1PA11 4918 + 2774 4578 13816 784 0 5 131 12 14 36 48 15 30 0 11 21 0 1 210 1 2 134 0 1 158 6 1 65 2 1 80 3 1 13 1 0 20 4 0 9 36 22 11 5 4 13 2 0 11 chain 516293 chr8 145138636 + 116326515 116332659 L1PA6 6164 + 0 6162 2454 194 1 2 36 5 5 24 5 6 48 21 21 173 2 1 172 5 11 844 0 1 787 1 0 141 0 2 728 0 1 310 0 4 1377 4 1 391 0 1 252 0 6 623 chain 14229 chr8 145138636 + 116387383 116387567 THE1C 375 + 0 189 63293 64 11 16 109 chain 87308 chr8 145138636 + 116387941 116389581 THE1C-int 1605 + 2 1587 20170 12 1 3 312 5 10 16 0 1 9 407 415 193 81 0 166 0 4 9 1 2 18 3 4 33 5 8 318 1 0 7 5 7 38 chain 513151 chr8 145138636 + 116390733 116396864 L1PA6 6164 + 0 6149 2614 66 0 1 392 6 5 49 0 1 39 2 1 233 0 17 560 6 14 767 0 3 177 25 0 845 9 10 6 1 0 66 2 0 54 2 0 97 6 5 1085 0 18 167 0 1 1147 0 1 177 7 0 6 1 8 131 chain 506900 chr8 145138636 + 116410346 116416457 L1PA6 6164 + 0 6162 2896 194 1 2 66 12 14 223 10 6 5 0 3 420 0 25 113 12 11 80 0 10 7 10 0 1135 0 1 308 0 12 551 1 0 4 2 1 242 0 1 713 0 1 214 0 4 684 0 1 608 3 10 345 3 4 4 1 0 140 chain 14446 chr8 145138636 + 116431426 116431623 MER2 342 + 149 342 62971 57 8 0 6 0 4 126 chain 9629 chr8 145138636 + 116512880 116512992 L1PA8 5853 + 5742 5853 71198 18 1 0 93 chain 110259 chr8 145138636 + 116530906 116532253 LTR12C 1709 + 0 1709 17042 128 0 1 209 3 46 222 1 0 4 0 1 188 3 319 106 0 4 283 0 1 94 4 1 102 chain 10600 chr8 145138636 + 116534196 116534388 L1PB3 3668 + 3394 3566 69229 84 22 6 11 1 0 8 1 0 24 7 5 34 chain 44569 chr8 145138636 + 116564714 116565303 L1PA8 5853 + 5267 5852 31797 153 10 11 133 1 0 46 2 0 69 11 11 50 2 1 19 1 0 92 chain 20395 chr8 145138636 + 116566951 116567315 L1PB1 5432 + 4956 5422 55890 71 5 132 9 2 0 51 1 0 11 6 5 45 1 0 16 24 12 18 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 22949 chr8 145138636 + 116578378 116578680 AluSp 311 + 11 303 52448 281 7 0 6 3 0 5 chain 35655 chr8 145138636 + 116621349 116621889 MLT2A2 560 + 7 560 37628 162 40 49 146 6 7 22 1 0 5 14 17 75 0 1 6 2 1 4 0 1 57 chain 93663 chr8 145138636 + 116678002 116679042 SVA_D 2077 + 35 1265 19086 7 0 12 154 4 1 696 0 181 179 chain 34409 chr8 145138636 + 116679044 116679599 SVA_F 1814 + 572 1185 32096 16 3 42 30 104 4 72 0 119 32 0 1 60 15 14 223 chain 7649 chr8 145138636 + 116679093 116679197 SVA_F 1814 + 906 1024 37477 40 1 16 34 1 0 28 chain 98223 chr8 145138636 + 116679599 116680832 SVA_E 1901 + 804 1891 18512 8 1 0 5 1 0 110 4 0 124 99 0 44 1 0 30 40 0 96 0 1 38 2 1 630 chain 1121 chr8 145138636 + 116679852 116679882 SVA_F 1814 + 988 1017 63772 13 1 0 16 chain 2586 chr8 145138636 + 116679889 116679951 SVA_E 1901 + 817 879 61063 62 chain 13542 chr8 145138636 + 116700329 116700516 MER30 238 + 33 226 64265 95 1 10 61 3 0 27 chain 71738 chr8 145138636 + 116703006 116703921 LTR13_ 950 + 0 950 23609 132 7 0 6 9 16 17 1 4 93 0 24 57 0 1 89 3 9 234 0 1 267 chain 106693 chr8 145138636 + 116717189 116718867 L1PB1 5432 + 3756 5422 17469 241 10 9 4 0 1 6 1 0 49 5 7 97 15 16 223 1 3 9 0 1 24 0 1 88 0 2 91 0 1 33 0 15 103 25 26 46 1 9 44 9 7 193 4 1 10 5 0 22 8 6 12 2 0 3 2 0 9 12 10 42 2 1 10 6 5 41 0 45 9 66 1 14 2 0 24 1 0 21 1 0 13 1 0 18 chain 110173 chr8 145138636 + 116720530 116722048 THE1B-int 1605 + 0 1605 17059 14 0 2 21 0 2 74 13 15 51 10 23 20 0 9 60 6 24 117 0 25 88 0 7 11 0 4 128 4 16 216 5 6 282 19 11 55 1 0 37 3 2 35 3 4 240 0 1 5 chain 15132 chr8 145138636 + 116722048 116722410 THE1B 368 + 0 368 62123 80 158 163 67 0 1 57 chain 38271 chr8 145138636 + 116738962 116739825 MER9a3 513 + 0 513 35861 17 0 2 208 21 0 9 16 0 119 316 0 79 10 9 11 0 2 57 chain 24618 chr8 145138636 + 116804230 116804592 THE1D 372 + 0 365 49841 162 0 1 16 28 33 100 8 5 48 chain 26760 chr8 145138636 + 116898040 116898398 THE1A 353 + 0 351 46600 80 9 0 29 2 1 84 0 3 5 1 0 60 0 1 88 chain 131077 chr8 145138636 + 116898400 116899976 THE1A-int 1579 + 0 1579 13919 649 0 1 4 1 0 585 0 2 41 0 1 10 0 2 5 4 0 19 0 1 41 0 1 217 chain 26459 chr8 145138636 + 116899976 116900331 THE1A 353 + 0 353 47040 57 1 0 4 8 9 39 2 1 88 1 0 155 chain 111212 chr8 145138636 + 116909974 116911197 L1PA4 6152 + 4923 6146 16913 1223 chain 4036 chr8 145138636 + 116955815 116955908 MLT1C 463 + 308 403 91177 15 29 31 49 chain 134675 chr8 145138636 + 116973387 116974926 L1PA5 6144 + 4331 5874 13574 960 1 4 510 0 1 68 chain 15841 chr8 145138636 + 117022024 117022217 AluYk4 311 + 107 299 61233 25 1 0 167 chain 40595 chr8 145138636 + 117047667 117048209 MER41A 554 + 1 554 34229 86 1 6 52 0 1 87 2 1 82 6 9 120 10 13 96 chain 4970 chr8 145138636 + 117165606 117165698 L1M2c 2366 + 1 91 85798 27 19 17 46 chain 9314 chr8 145138636 + 117169300 117169419 MER85 139 + 7 139 71880 53 0 3 26 0 10 40 chain 69191 chr8 145138636 + 117181242 117182008 L1PA4 6152 + 5377 6146 24182 754 0 3 12 chain 539445 chr8 145138636 + 117191438 117197574 L1PA3long 6157 + 0 6157 1375 578 1 5 5 3 0 22 0 6 94 0 7 1202 0 5 28 2 1 2006 0 1 42 0 3 636 1 0 1516 chain 85110 chr8 145138636 + 117256350 117257335 L1PA7 6471 + 5464 6455 20602 157 1 0 77 0 4 10 0 3 740 chain 45113 chr8 145138636 + 117377959 117378469 L1PA4 6152 + 5642 6152 31521 510 chain 44515 chr8 145138636 + 117396593 117397080 L1PA2 6032 + 5544 6032 31818 231 0 1 256 chain 281267 chr8 145138636 + 117419625 117423268 L1PA10 4194 + 404 4062 7391 84 2 0 665 0 1 200 0 1 388 0 4 19 1 2 458 0 4 73 5 1 90 2 0 7 4 5 181 21 25 44 5 11 9 2 1 86 1 0 368 2 0 170 6 9 185 3 1 135 15 17 294 0 1 72 0 1 46 chain 144471 chr8 145138636 + 117426202 117428074 SVA_A 1864 + 27 1861 12734 88 1 11 559 40 0 41 10 7 30 1 0 32 8 5 31 18 54 138 3 0 38 2 0 79 7 6 131 9 6 27 45 17 534 chain 286589 chr8 145138636 + 117434316 117437663 L1PA4 6152 + 0 5493 7243 485 1 0 74 0 1 316 0 1 163 1 0 339 7 2154 149 0 2 1119 5 0 498 1 0 92 0 1 47 0 2 50 chain 29242 chr8 145138636 + 117451415 117451737 AluYb8 318 + 0 315 42978 118 5 0 14 2 0 183 chain 38612 chr8 145138636 + 117455167 117455636 L1P1 4361 + 3874 4341 35632 77 0 2 198 1 0 71 2 0 20 0 1 62 1 0 23 2 1 12 chain 108887 chr8 145138636 + 117478774 117479978 L1PA4 6152 + 4633 5837 17197 1204 chain 296354 chr8 145138636 + 117487347 117491355 L1PA10 4194 + 176 4161 6938 11 1 0 12 33 24 9 2 0 9 3 2 7 1 0 22 2 0 14 1 0 7 46 20 24 0 1 4 3 0 14 1 0 5 3 1 10 1 0 8 5 0 15 7 0 7 5 1 13 8 9 57 4 2 117 0 1 20 11 12 545 0 4 182 0 1 105 0 1 174 0 2 78 0 1 243 1 0 659 0 1 27 0 1 109 1 0 301 0 25 33 0 4 304 0 1 356 0 3 306 4 7 9 4 1 33 1 0 11 chain 49592 chr8 145138636 + 117572190 117572775 L1PA7 6471 + 4555 5143 29731 117 0 2 131 0 1 337 chain 10653 chr8 145138636 + 117575911 117576207 L1PB1 5432 + 5159 5427 69120 9 2 0 51 19 17 39 6 5 12 31 19 14 10 7 14 2 0 24 1 0 18 18 16 10 1 0 8 2 0 5 chain 4809 chr8 145138636 + 117597765 117597824 LTR16A1 462 + 396 455 86655 59 chain 28368 chr8 145138636 + 117617206 117617587 MLT2A1 477 + 0 383 44319 138 0 3 26 6 3 32 1 2 143 1 2 34 chain 11071 chr8 145138636 + 117631246 117631435 L1PA15 4387 + 4130 4310 68452 55 1 0 22 4 0 10 1 0 39 17 14 40 chain 232673 chr8 145138636 + 117636951 117639767 L1PA4 6152 + 3522 6151 8673 703 2 0 61 193 2 56 0 4 873 0 2 928 chain 23938 chr8 145138636 + 117647915 117648256 THE1B 368 + 7 368 50886 37 8 23 99 8 7 25 2 0 24 10 18 128 chain 44127 chr8 145138636 + 117673416 117673950 L1PA7 6471 + 5465 6003 32066 78 2 1 70 0 3 64 5 6 111 0 1 204 chain 33100 chr8 145138636 + 117708337 117708779 MER4A1 472 + 0 470 39437 100 0 2 107 5 32 29 6 5 195 chain 7720 chr8 145138636 + 117729871 117729969 MER20 218 + 46 143 75561 36 1 0 61 chain 162013 chr8 145138636 + 117775048 117780047 L1PREC2 3366 + 248 2951 11612 6 1 0 10 8 7 18 12 11 170 0 3 20 0 1 45 7 8 105 10 0 221 39 38 388 16 11 148 6 0 225 1 0 102 5 0 42 11 12 200 16 18 45 2546 281 369 2 0 26 23 34 31 12 10 14 29 21 12 2 0 5 3 0 17 2 0 29 chain 106404 chr8 145138636 + 117777113 117778410 SVA_B 1603 + 0 1603 17508 19 0 25 224 0 4 151 0 116 147 40 0 57 0 204 79 4 1 576 chain 47675 chr8 145138636 + 117857716 117858384 Tigger1 2417 + 1435 2083 30408 19 8 7 5 0 1 218 0 3 86 1 4 226 32 6 73 chain 25545 chr8 145138636 + 117864478 117864781 AluY 311 + 11 311 48412 121 0 1 165 4 0 13 chain 79996 chr8 145138636 + 117914136 117915207 MER11A 1151 + 0 1151 21627 85 0 91 103 0 5 10 4 0 32 0 2 115 0 1 94 0 1 145 5 6 123 1 27 14 34 8 21 18 0 37 0 1 46 1 0 16 0 1 167 chain 6805 chr8 145138636 + 117962922 117963056 LTR32 486 + 15 150 78301 69 38 39 27 chain 24985 chr8 145138636 + 118002840 118003390 L1PB1 5432 + 4921 5422 49310 38 4 5 25 1 4 21 4 6 74 16 9 11 19 0 22 1 0 8 1 0 14 4 1 10 2 0 51 2 1 16 1 0 40 4 3 16 24 12 18 30 26 18 1 0 21 1 0 13 1 0 18 chain 22287 chr8 145138636 + 118167926 118168220 THE1A 353 + 8 353 53426 10 0 1 83 9 8 110 0 51 82 chain 34981 chr8 145138636 + 118171847 118172250 L1PA5 6144 + 5708 6129 38027 74 0 18 329 chain 24384 chr8 145138636 + 118179159 118179460 AluSp 311 + 0 303 50187 36 0 4 242 2 0 21 chain 101783 chr8 145138636 + 118227817 118229263 L1PB1 5432 + 3999 5413 18088 354 0 2 21 0 1 249 7 0 477 14 12 23 1 0 5 34 27 26 4 7 17 2 1 16 1 0 43 1 0 16 1 3 9 14 0 19 8 5 14 2 0 26 0 1 18 1 0 13 1 0 9 chain 34300 chr8 145138636 + 118285943 118286327 L1PA5 6144 + 5760 6144 38496 384 chain 5429 chr8 145138636 + 118292109 118292294 L1PB1 5432 + 5274 5430 83559 6 1 0 12 63 42 12 2 0 24 1 0 19 8 7 8 1 0 16 2 0 10 chain 50470 chr8 145138636 + 118292512 118293061 L1PA2 6032 + 5480 6029 29390 549 chain 13814 chr8 145138636 + 118316964 118317131 MLT1B 390 + 91 258 63857 167 chain 5932 chr8 145138636 + 118318397 118318518 L1PB3 3668 + 3503 3613 81353 25 3 1 37 7 3 13 2 0 13 7 4 14 chain 21920 chr8 145138636 + 118320568 118320821 L1PA5 6144 + 5885 6138 53944 253 chain 35041 chr8 145138636 + 118354957 118355507 L1PB1 5432 + 4884 5422 37990 219 15 11 24 1 0 8 1 0 11 15 13 49 1 0 17 1 0 41 7 6 13 2 0 14 0 2 11 4 8 15 2 0 24 1 0 21 1 0 13 1 0 18 chain 27990 chr8 145138636 + 118434818 118435119 AluYa5 310 + 0 298 44886 97 3 0 201 chain 18066 chr8 145138636 + 118508170 118508387 L1PA5 6144 + 5916 6140 58595 73 1 8 143 chain 555125 chr8 145138636 + 118548538 118554686 L1PA3long 6157 + 0 6157 400 743 1 0 447 0 3 1332 0 3 1461 3 0 2013 1 8 147 chain 27008 chr8 145138636 + 118648479 118648843 THE1B 368 + 0 368 46259 108 5 4 57 1 0 29 0 3 9 0 4 16 1 0 138 chain 17639 chr8 145138636 + 118705935 118706151 L1PB2 3958 + 2599 2817 59080 51 0 1 141 0 1 24 chain 3512 chr8 145138636 + 118749667 118749705 MER53 195 + 128 166 95155 38 chain 16283 chr8 145138636 + 118752008 118752362 THE1C 375 + 2 375 60642 54 13 27 8 13 0 18 46 51 19 0 3 14 35 46 108 1 0 25 chain 48566 chr8 145138636 + 118788024 118788640 PRIMA4_LTR 623 + 2 621 30095 183 1 2 197 0 2 235 chain 125822 chr8 145138636 + 118798929 118800320 L1PA3long 6157 + 3983 5383 14582 223 0 1 141 0 8 1027 chain 71118 chr8 145138636 + 118800320 118801093 L1PA3long 6157 + 5384 6157 23738 773 chain 195097 chr8 145138636 + 118828032 118830380 L1PA7 6471 + 4123 6469 9885 82 0 1 401 0 2 266 4 0 508 0 7 227 19 15 485 1 0 14 0 1 73 5 1 263 chain 26269 chr8 145138636 + 118840206 118840535 THE1D-int 1627 + 0 330 47322 38 1 0 59 0 1 210 0 1 21 chain 125524 chr8 145138636 + 118855564 118857103 L1PA7 6471 + 3532 5069 14624 17 3 7 64 9 10 20 0 1 358 3 1 305 0 1 350 0 8 304 14 0 7 2 1 83 chain 31216 chr8 145138636 + 118939971 118940334 L1PA6 6164 + 5796 6161 40958 355 0 2 8 chain 10047 chr8 145138636 + 118976512 118976619 U6 107 + 0 107 70310 107 chain 103296 chr8 145138636 + 118976619 118977749 L1PA3long 6157 + 5016 6150 17916 1086 0 4 44 chain 87202 chr8 145138636 + 119033285 119034426 L1PA7 6471 + 5347 6470 20191 77 0 1 86 0 1 108 0 4 49 0 1 26 0 2 41 3 2 48 1 0 281 2 1 246 1 3 100 28 1 31 1 2 12 chain 26219 chr8 145138636 + 119057050 119057413 THE1D 372 + 0 372 47393 61 4 14 114 20 19 164 chain 215074 chr8 145138636 + 119109692 119112349 L1PA7 6471 + 3784 6469 9173 52 27 26 142 5 6 76 0 5 230 0 1 427 0 1 24 0 3 71 0 1 382 0 1 203 0 1 163 0 4 16 0 6 19 1 5 96 0 1 551 14 14 158 chain 41422 chr8 145138636 + 119120281 119120753 L1PA5 6144 + 4912 5381 33721 390 3 0 79 chain 75125 chr8 145138636 + 119233073 119233946 L1P1 4361 + 2882 3752 22812 204 4 0 214 11 12 440 chain 508448 chr8 145138636 + 119233947 119239677 L1PA3long 6157 + 0 5904 2823 152 0 1 103 0 1 520 1 129 486 9 18 155 1 3 285 0 5 932 0 2 474 0 4 53 0 1 826 0 4 4 1 0 300 0 3 28 0 7 162 0 1 648 0 2 339 0 5 251 chain 8147 chr8 145138636 + 119247021 119247112 MER85 139 + 5 96 74528 91 chain 34468 chr8 145138636 + 119250151 119250543 L1PA2 6032 + 5633 6027 38380 241 0 7 140 5 0 6 chain 280241 chr8 145138636 + 119254189 119257345 L1PA4 6152 + 2972 6143 7414 16 0 7 176 4 3 319 0 4 102 14 6 567 0 1 81 1 0 773 0 9 268 0 4 835 chain 543292 chr8 145138636 + 119292040 119298187 L1PA3long 6157 + 6 6155 1119 311 5 4 1125 0 3 27 0 1 264 0 1 837 5 6 271 0 1 400 0 3 1583 10 0 463 0 1 693 1 0 6 1 4 145 chain 51702 chr8 145138636 + 119306135 119306702 L1PA2 6032 + 5456 6023 28962 567 chain 495846 chr8 145138636 + 119306806 119312921 L1PA6 6164 + 0 6162 3274 345 10 28 35 19 19 360 0 17 427 0 1 6 0 1 516 7 11 191 6 5 372 7 6 48 7 4 57 0 4 504 2 1 238 0 1 26 2 0 694 0 1 11 0 1 458 1 3 556 0 1 242 0 1 5 0 1 87 0 1 206 0 2 9 0 1 147 0 1 352 1 0 9 3 0 69 0 1 50 0 2 20 2 0 8 chain 143212 chr8 145138636 + 119315853 119317438 L1PA3long 6157 + 4574 6157 12841 733 1 0 845 1 0 5 chain 5817 chr8 145138636 + 119325178 119325258 MADE1 96 + 0 96 81842 33 2 18 45 chain 395434 chr8 145138636 + 119377961 119382945 L1PA7 6471 + 1597 6459 5228 61 0 1 109 0 3 307 0 1 167 1 0 97 0 1 4 1 0 289 0 2 232 0 5 602 0 4 21 2 0 20 1 0 26 0 4 189 1 0 58 0 1 35 7 6 354 1 0 434 5 4 315 1 0 92 0 4 62 2 0 5 1 3 506 1 0 8 142 0 283 9 13 164 15 15 162 0 1 192 chain 6497 chr8 145138636 + 119472111 119472215 MLT1D 503 + 2 107 79363 35 17 18 52 chain 7354 chr8 145138636 + 119497525 119497662 THE1D 372 + 0 136 76516 47 3 0 20 30 31 13 0 1 24 chain 523865 chr8 145138636 + 119521003 119527155 L1PA5 6144 + 0 6143 2096 135 0 14 195 21 0 581 14 3 147 4 7 83 13 4 1137 2 0 1176 0 1 25 1 2 736 1 0 3 0 1 1119 0 2 618 1 8 9 7 15 111 3 1 10 chain 96713 chr8 145138636 + 119550137 119551185 L1PA3long 6157 + 4278 5326 18690 1048 chain 22235 chr8 145138636 + 119661023 119661332 L1PA8 5853 + 5551 5853 53499 11 1 0 47 2 0 69 2 1 14 1 0 47 2 1 19 1 0 93 chain 63181 chr8 145138636 + 119676455 119677283 L1PA8 5853 + 5031 5853 25582 26 2 1 36 0 1 425 5 6 38 1 0 44 2 0 72 1 0 7 2 1 52 2 1 10 11 10 92 chain 28812 chr8 145138636 + 119690960 119693150 THE1C 375 + 1 375 43609 124 1816 0 250 chain 17010 chr8 145138636 + 119691087 119691321 THE1C 375 + 125 360 59793 59 1 2 174 chain 6512 chr8 145138636 + 119692818 119692897 THE1C 375 + 46 125 79303 79 chain 35016 chr8 145138636 + 119717482 119717950 MER4A1 472 + 0 472 38008 25 0 1 19 2 9 26 1 0 140 21 17 56 0 1 178 chain 42596 chr8 145138636 + 119718524 119719042 MER41A 554 + 28 554 33001 180 5 8 252 0 5 81 chain 3238 chr8 145138636 + 119732914 119732948 MER8 282 + 0 34 97587 34 chain 6483 chr8 145138636 + 119769677 119769758 L1PA15-16 3068 + 533 614 79399 81 chain 10441 chr8 145138636 + 119774446 119774606 MER30 238 + 66 238 69534 24 6 8 11 4 14 115 chain 73561 chr8 145138636 + 119787393 119788247 L1PA7 6471 + 5615 6467 23202 9 2 0 66 0 1 272 0 1 495 2 0 8 chain 28932 chr8 145138636 + 119811524 119811828 AluYk12 309 + 0 304 43433 304 chain 114849 chr8 145138636 + 119823672 119825529 THE1B-int 1605 + 16 1600 16403 91 0 3 313 17 42 38 0 2 13 312 1 89 3 0 31 0 1 456 12 16 40 28 32 73 0 2 341 chain 12666 chr8 145138636 + 119849426 119849702 L1MB8 1703 + 1443 1648 65690 145 80 18 23 10 1 18 chain 15648 chr8 145138636 + 119862679 119862860 7SLRNA 320 + 18 199 61472 181 chain 9040 chr8 145138636 + 119869744 119869854 LTR8 732 + 618 728 72471 110 chain 78078 chr8 145138636 + 119917331 119918257 LTR5_Hs 974 + 0 971 22078 17 0 4 62 0 34 471 0 1 230 1 7 145 chain 28301 chr8 145138636 + 120069348 120069797 MLT2A1 477 + 0 467 44414 129 0 1 26 1 0 13 1 5 107 2 1 14 0 1 60 8 4 18 48 66 22 chain 76858 chr8 145138636 + 120179165 120180116 L1PA7 6471 + 4435 5380 22358 476 0 1 17 17 6 289 0 4 152 chain 16299 chr8 145138636 + 120270682 120271085 L1PA15 4387 + 3971 4357 60624 74 62 61 25 28 30 24 1 0 22 8 0 10 7 6 13 0 2 29 6 3 41 10 8 11 5 0 27 chain 32635 chr8 145138636 + 120278896 120279314 L1PA8 5853 + 5440 5853 39827 124 1 0 44 2 0 70 2 1 27 0 1 33 2 1 19 2 1 92 chain 16119 chr8 145138636 + 120282070 120282241 L1PA3long 6157 + 5733 5904 60874 171 chain 15797 chr8 145138636 + 120307293 120307512 Tigger3d 321 + 69 290 61289 64 1 2 47 4 5 103 chain 28542 chr8 145138636 + 120348018 120348665 L1PB1 5432 + 4955 5420 44048 148 1 0 8 150 0 6 3 0 21 1 0 9 1 0 11 15 9 52 7 6 12 1 0 44 1 0 15 3 0 6 16 6 19 9 6 13 2 0 24 1 0 20 0 3 11 1 0 16 chain 502187 chr8 145138636 + 120348977 120354404 L1PA2 6032 + 604 6032 3051 110 0 1 227 1 0 4 1 2 5084 chain 336306 chr8 145138636 + 120398522 120403068 L1PA11 4918 + 47 4567 6125 31 2 0 9 1 0 23 6 5 13 2 0 52 1 0 33 2 0 5 2 1 184 0 29 32 35 10 49 0 7 71 1 0 542 0 3 272 0 2 37 0 6 298 5 9 23 0 1 19 0 1 315 1 8 71 3 0 35 51 16 46 1 5 24 0 1 165 0 4 42 25 23 148 1 0 176 1 0 20 1 2 300 0 3 213 0 1 104 1 0 524 0 1 52 0 2 232 6 2 44 2 1 13 2 0 52 1 0 15 2 0 13 2 1 14 10 6 9 3 0 5 2 0 11 9 6 14 2 1 13 chain 31840 chr8 145138636 + 120427467 120428207 L1PA13 3608 + 3025 3552 40462 33 14 0 70 1 0 31 2 1 36 168 9 68 2 0 62 7 6 45 1 0 10 2 0 48 9 5 19 1 0 19 0 3 7 37 11 11 0 1 4 2 1 10 4 1 12 1 0 4 chain 23106 chr8 145138636 + 120457638 120457972 AluY 311 + 0 306 52200 10 4 0 114 2 3 48 29 7 117 3 0 7 chain 190367 chr8 145138636 + 120476184 120478410 L1PA7 6471 + 4236 6470 10095 37 0 1 399 0 4 277 0 1 665 2 1 742 0 3 104 chain 3457 chr8 145138636 + 120519131 120519233 MER2 342 + 14 114 95565 19 52 50 31 chain 4450 chr8 145138636 + 120562814 120562867 LTR12F 595 + 419 472 88612 53 chain 26666 chr8 145138636 + 120582587 120582932 L1PA8 5853 + 5522 5853 46734 42 1 0 44 2 0 70 2 1 14 1 0 47 2 1 19 1 0 56 7 0 37 chain 43926 chr8 145138636 + 120595142 120595974 MER41A 554 + 0 552 32181 233 2 1 178 301 22 118 chain 14347 chr8 145138636 + 120617002 120617214 MER30 238 + 0 238 63117 73 7 13 20 12 32 100 chain 6510 chr8 145138636 + 120653152 120653565 MLT1C 463 + 57 440 79310 48 318 288 47 chain 12133 chr8 145138636 + 120690079 120690239 MER44A 345 + 83 252 66600 18 0 4 69 1 5 53 0 1 19 chain 5172 chr8 145138636 + 120745994 120746579 MER58A 224 + 45 209 84813 35 34 50 14 457 20 45 chain 4455 chr8 145138636 + 120792158 120792246 L1PB3 3668 + 3482 3566 88580 18 6 4 24 11 9 29 chain 28370 chr8 145138636 + 120852989 120853368 THE1C 375 + 0 375 44316 178 0 3 12 11 5 151 1 0 26 chain 110095 chr8 145138636 + 120887266 120888472 L1PA3long 6157 + 4950 6157 17067 585 0 1 621 chain 21996 chr8 145138636 + 120913238 120913514 THE1D-int 1627 + 0 275 53842 11 2 1 263 chain 29046 chr8 145138636 + 120938537 120938850 AluYb8 318 + 0 311 43256 132 2 0 179 chain 138333 chr8 145138636 + 121026485 121028051 L1P1 4361 + 2425 3992 13234 103 0 1 151 0 1 5 9 8 1298 chain 226133 chr8 145138636 + 121091394 121093876 L1PA3long 6157 + 3669 6157 8856 277 0 1 1357 0 4 705 1 2 142 chain 111027 chr8 145138636 + 121124678 121125987 L1PA4 6152 + 2209 3466 16933 295 0 1 385 58 3 278 1 0 79 0 3 213 chain 16010 chr8 145138636 + 121137643 121137973 THE1A 353 + 0 353 61014 18 2 0 29 0 1 63 0 2 6 89 120 49 0 1 15 10 0 49 chain 13063 chr8 145138636 + 121141773 121142003 L1PA14 3548 + 3235 3456 65000 97 20 15 14 0 1 17 4 2 12 1 0 5 1 0 15 4 3 40 chain 86150 chr8 145138636 + 121149804 121150866 L1PA8 5853 + 4795 5853 20399 214 0 2 553 1 0 44 1 0 69 3 2 11 1 0 50 2 1 19 2 1 92 chain 15071 chr8 145138636 + 121155660 121155962 MER4B 649 + 69 408 62182 18 39 38 36 19 18 19 1 24 71 1 2 49 6 21 43 chain 4100 chr8 145138636 + 121156757 121156808 MADE1 96 + 45 96 90771 51 chain 6817 chr8 145138636 + 121180034 121180202 L1PB1 5432 + 5282 5427 78253 14 3 0 6 19 9 16 2 0 6 1 0 13 2 0 24 1 0 18 8 7 9 1 0 18 2 0 5 chain 5896 chr8 145138636 + 121186797 121186870 MADE1 96 + 7 96 81503 22 0 16 51 chain 2974 chr8 145138636 + 121193529 121193560 MER81 114 + 51 82 100113 31 chain 46544 chr8 145138636 + 121247860 121248399 L1PA7 6471 + 5919 6459 30826 185 0 1 354 chain 25456 chr8 145138636 + 121346135 121346418 L1PA4 6152 + 5868 6152 48547 170 0 1 113 chain 30940 chr8 145138636 + 121378336 121378741 MER51B 395 + 4 395 41182 35 13 0 206 13 12 138 chain 48992 chr8 145138636 + 121391985 121392600 L1PA8 5853 + 5244 5853 29957 24 0 1 295 1 0 44 2 0 71 1 0 5 9 8 48 2 1 19 2 1 92 chain 558994 chr8 145138636 + 121417872 121424035 L1PA3long 6157 + 0 6157 201 369 8 0 420 1 0 452 2 0 480 0 1 1455 3 1 765 0 1 1366 0 4 509 0 1 333 chain 22087 chr8 145138636 + 121443483 121443744 AluSp 311 + 29 290 53717 261 chain 52473 chr8 145138636 + 121509222 121509788 L1PA2 6032 + 4252 4823 28738 125 0 5 441 chain 18787 chr8 145138636 + 121521658 121521929 AluSp 311 + 9 285 57801 44 33 39 96 1 0 97 chain 36829 chr8 145138636 + 121544996 121545453 L1PA8A 6298 + 5385 5848 36862 102 0 4 221 0 2 134 chain 12623 chr8 145138636 + 121572397 121572679 L1PB1 5432 + 5158 5420 65770 11 3 1 50 20 18 41 2 1 16 20 13 18 8 5 11 7 5 22 1 0 22 1 0 12 1 0 16 chain 26644 chr8 145138636 + 121624813 121625120 AluYk4 311 + 0 304 46765 132 3 0 172 chain 10972 chr8 145138636 + 121755335 121755511 MSTA 426 + 0 199 68590 56 1 0 44 20 44 55 chain 38865 chr8 145138636 + 121805008 121805470 LTR2 463 + 0 463 35457 359 15 16 88 chain 42017 chr8 145138636 + 121808716 121809544 MER41A 554 + 0 534 33351 273 0 1 139 301 0 13 0 1 41 8 13 53 chain 3333 chr8 145138636 + 121815631 121815668 tRNA-Arg-AGA 37 + 0 37 96746 37 chain 40229 chr8 145138636 + 121817671 121818177 LTR10D 510 + 0 510 34501 71 3 7 25 9 8 120 1 0 38 0 2 239 chain 27174 chr8 145138636 + 121843043 121843408 THE1C 375 + 0 363 46007 16 1 0 109 3 0 99 4 7 43 0 1 4 4 3 67 1 0 14 chain 4321 chr8 145138636 + 121872829 121872875 MADE1 96 + 50 96 89350 46 chain 363315 chr8 145138636 + 121908247 121913326 L1PA8 5853 + 50 5853 5759 22 2 0 10 1 0 13 52 16 170 0 4 17 17 6 154 0 1 173 0 1 282 1 0 97 0 2 506 1 0 207 0 2 45 0 3 125 0 2 47 6 20 51 21 5 12 4 11 115 5 6 126 5 6 166 0 1 7 0 4 48 330 0 385 0 1 295 11 0 59 1 1094 88 0 1 236 0 5 19 1 2 14 10 2 63 2 1 211 2 0 147 23 27 136 1 2 61 0 2 180 1 0 40 11 9 65 2 1 9 1 0 56 1 0 16 1 0 93 chain 117155 chr8 145138636 + 121947855 121949542 LTR12C 1709 + 0 1709 16031 64 19 20 189 2 1 116 1 0 73 52 11 92 12 14 24 0 1 49 0 119 64 1 0 275 37 6 91 0 1 5 44 13 154 3 8 237 1 0 82 chain 2119 chr8 145138636 + 121948888 121948925 LTR12C 1709 + 793 830 59219 37 chain 30403 chr8 145138636 + 121989816 121990256 MER57A1 433 + 0 433 41672 274 15 16 77 22 13 43 0 1 9 chain 506918 chr8 145138636 + 122001272 122007230 L1PA6 6164 + 0 6161 2893 236 0 2 161 1 16 102 0 2 17 1 2 29 1 0 884 0 2 532 2 0 558 1 0 259 0 2 418 0 1 163 2 174 986 0 1 131 5 8 84 0 2 782 0 3 456 5 6 142 chain 515927 chr8 145138636 + 122051073 122057496 L1PA7 6471 + 0 6461 2472 405 2 3 106 9 10 61 1 8 78 22 23 234 5 0 6 5 10 65 0 1 22 0 7 105 2 0 13 1 3 149 0 1 74 6 7 77 0 1 94 1 0 196 2 1 19 1 2 360 1 2 341 0 8 149 2 0 248 5 1 120 3 4 462 0 4 60 4 8 297 4 5 181 1 0 198 0 1 344 0 1 99 0 4 271 1 0 83 0 1 323 5 0 48 0 1 88 0 1 130 0 4 55 1 0 456 1 0 12 0 1 146 18 0 7 0 18 138 chain 29302 chr8 145138636 + 122074205 122074590 MER4A1 472 + 30 434 42891 188 13 34 84 1 0 76 6 5 17 chain 25769 chr8 145138636 + 122177738 122178012 AluYa5 310 + 36 310 48071 274 chain 34224 chr8 145138636 + 122199797 122200217 L1P3 4156 + 3647 4107 38545 159 0 4 21 0 32 139 1 5 100 chain 210827 chr8 145138636 + 122200220 122202808 L1PA3long 6157 + 3552 6157 9323 340 1 0 445 0 1 297 1 0 329 5 12 279 0 1 54 0 4 54 0 4 14 16 18 753 chain 32912 chr8 145138636 + 122202829 122203209 L1PA7 6471 + 6086 6466 39577 380 chain 41957 chr8 145138636 + 122232096 122232659 LTR10A 586 + 0 565 33383 209 0 1 208 7 10 75 12 10 52 chain 551510 chr8 145138636 + 122244418 122250436 L1PA2 6032 + 0 6030 638 567 0 4 3713 0 5 893 1 5 825 2 1 17 chain 289930 chr8 145138636 + 122274064 122278034 L1PA10 4194 + 175 4150 7130 15 2 0 9 3 0 13 39 30 8 1 0 22 2 0 14 1 0 8 46 29 12 2 0 21 1 0 7 4 7 10 5 0 15 7 0 8 1 0 6 0 1 74 2 0 260 0 6 187 9 8 78 7 10 249 5 10 56 2 0 291 7 9 105 0 1 4 9 8 182 3 4 538 0 24 61 1 5 43 0 1 33 3 0 33 7 18 255 10 1 236 0 1 263 1 2 393 0 12 245 3 0 26 0 1 7 chain 15980 chr8 145138636 + 122279734 122280017 L1MA5A 2387 + 2047 2296 61050 22 1 0 37 2 1 48 2 0 59 6 3 15 36 9 55 chain 20025 chr8 145138636 + 122284786 122285083 MER50 708 + 391 686 56356 89 2 1 21 20 21 13 1 0 33 0 1 5 2 0 111 chain 160818 chr8 145138636 + 122298298 122300068 L1PA3long 6157 + 4385 6157 11694 567 0 1 435 0 1 768 chain 20460 chr8 145138636 + 122352096 122352469 THE1B 368 + 2 368 55821 17 1 0 28 0 1 12 74 75 34 31 24 101 1 0 74 chain 23682 chr8 145138636 + 122366355 122366825 MLT2A2 560 + 0 560 51303 180 1 0 16 96 194 15 18 29 71 0 2 7 20 0 46 chain 25939 chr8 145138636 + 122390950 122391348 THE1C 375 + 0 375 47805 15 2 0 28 29 10 72 9 6 55 0 1 90 1 2 71 1 0 25 chain 21381 chr8 145138636 + 122400580 122400828 L1PA6 6164 + 5914 6162 54660 248 chain 15811 chr8 145138636 + 122407035 122407240 L1PA8 5853 + 5646 5847 61272 36 1 0 7 1 0 51 2 1 19 1 0 87 chain 3317 chr8 145138636 + 122435406 122435443 MER46C 351 + 267 304 96870 37 chain 59145 chr8 145138636 + 122445079 122445733 L1PA3long 6157 + 5504 6157 26621 636 1 0 17 chain 28718 chr8 145138636 + 122468792 122469288 L1PREC2 3366 + 144 628 43761 26 1 0 4 6 8 15 35 29 6 1 0 15 1 0 10 2 0 32 1 0 111 3 0 66 22 23 139 chain 37514 chr8 145138636 + 122476830 122477243 L1PA5 6144 + 5731 6144 36392 413 chain 5557 chr8 145138636 + 122559405 122559493 L1PB3 3668 + 3482 3566 83001 21 2 0 25 9 7 31 chain 28362 chr8 145138636 + 122565173 122565522 L1PA6 6164 + 5807 6156 44329 195 1 9 11 8 0 134 chain 22506 chr8 145138636 + 122591544 122592421 L1PB1 5432 + 4977 5416 53113 34 6 8 84 421 11 24 1 0 8 1 0 12 4 0 9 2 0 53 21 21 36 10 9 10 3 0 6 16 6 19 3 1 4 1 0 14 2 0 19 6 5 21 1 0 13 1 0 12 chain 24551 chr8 145138636 + 122663091 122663359 L1PA2 6032 + 5761 6029 49943 268 chain 5016 chr8 145138636 + 122704172 122704230 MER5A1 166 + 32 90 85585 58 chain 123051 chr8 145138636 + 122711496 122713383 THE1A-int 1579 + 0 1570 15018 333 0 8 22 325 0 174 0 1 45 0 1 49 12 1 74 0 8 295 0 1 181 0 1 159 0 1 105 2 1 47 1 0 63 chain 28340 chr8 145138636 + 122713391 122713745 THE1A 353 + 0 353 44353 110 1 0 243 chain 22761 chr8 145138636 + 122718856 122719145 THE1A-int 1579 + 0 291 52737 114 4 5 85 1 2 85 chain 33724 chr8 145138636 + 122725968 122726415 MLT2A2 560 + 0 560 38904 180 1 0 115 9 118 45 0 5 97 chain 52073 chr8 145138636 + 122767679 122768281 L1PA7 6471 + 5868 6470 28855 602 chain 28306 chr8 145138636 + 122815436 122815805 Tigger1 2417 + 1714 2088 44401 69 1 2 241 5 9 53 chain 35788 chr8 145138636 + 122836867 122837328 MER41A 554 + 66 553 37536 158 1 0 163 1 23 58 0 5 80 chain 37598 chr8 145138636 + 122871263 122871675 L1PA5 6144 + 5719 6131 36338 412 chain 27034 chr8 145138636 + 122950244 122950589 L1PA8 5853 + 5515 5853 46220 49 1 0 46 2 0 72 1 0 5 2 1 52 2 1 19 1 0 93 chain 6009 chr8 145138636 + 122972434 122972541 MIR 256 + 40 148 81039 49 23 24 35 chain 8478 chr8 145138636 + 123044716 123044809 HY4 93 + 0 93 73723 93 chain 3541 chr8 145138636 + 123089938 123089998 MER46C 351 + 267 330 94933 19 6 9 35 chain 28224 chr8 145138636 + 123117474 123117780 AluYg6 310 + 2 308 44525 306 chain 16714 chr8 145138636 + 123168175 123168413 MER30 238 + 0 238 60135 103 12 15 81 3 0 39 chain 27025 chr8 145138636 + 123189476 123189922 MER4A1 472 + 0 472 46237 12 11 13 16 0 7 91 0 1 44 4 2 7 2 0 7 28 32 151 7 21 47 3 5 16 chain 19796 chr8 145138636 + 123238104 123238399 THE1B 368 + 0 302 56682 131 9 13 23 2 0 7 1 2 14 0 2 22 0 4 12 1 0 12 2 1 59 chain 26834 chr8 145138636 + 123288018 123288321 AluSq10 312 + 2 306 46495 99 0 1 204 chain 139300 chr8 145138636 + 123314389 123316586 SVA_D 2077 + 375 2065 13155 325 0 77 131 3 0 8 97 6 25 11 0 87 8 10 175 0 1 118 49 0 107 433 0 620 chain 6624 chr8 145138636 + 123314859 123314953 SVA_D 2077 + 917 1009 49021 17 0 38 20 40 0 17 chain 3220 chr8 145138636 + 123315381 123315426 SVA_D 2077 + 903 946 34192 9 2 0 34 chain 29768 chr8 145138636 + 123315533 123315949 SVA_D 2077 + 1044 1378 34192 39 4 0 149 78 0 146 chain 1474 chr8 145138636 + 123315725 123315755 SVA_D 2077 + 1359 1388 57379 25 1 0 4 chain 2936 chr8 145138636 + 123315755 123315800 SVA_D 2077 + 746 831 90288 22 6 46 17 chain 4954 chr8 145138636 + 123342413 123342475 U6 107 + 0 64 85872 42 0 2 20 chain 4253 chr8 145138636 + 123348067 123348118 MADE1 96 + 45 96 89807 51 chain 183867 chr8 145138636 + 123364374 123366875 L1PB1 5432 + 2912 5422 10394 126 1 2 63 1 0 387 1 0 36 0 2 120 11 8 74 1 2 204 1 0 57 0 2 171 0 10 181 2 0 264 0 1 203 15 22 232 4 36 19 1 0 13 1 0 9 10 6 5 2 0 11 0 2 40 27 16 41 35 21 29 11 8 11 2 0 24 1 0 21 1 0 13 1 0 18 chain 59437 chr8 145138636 + 123382633 123383344 L1PA7 6471 + 5745 6459 26520 108 5 8 254 1 0 21 0 1 322 chain 41550 chr8 145138636 + 123410633 123411117 LTR17 781 + 255 730 33653 44 10 0 27 0 1 403 chain 26903 chr8 145138636 + 123411441 123411765 LTR17 781 + 0 326 46401 119 0 9 57 0 3 117 10 0 21 chain 16674 chr8 145138636 + 123433814 123434036 MER30 238 + 0 235 60183 98 11 0 16 0 24 97 chain 8442 chr8 145138636 + 123442973 123443506 MER66B 489 + 211 443 73815 42 411 110 80 chain 18803 chr8 145138636 + 123463819 123464119 THE1B 368 + 0 307 57776 5 0 3 161 1 0 8 19 23 14 2 5 13 13 11 64 chain 36167 chr8 145138636 + 123479521 123480071 LTR9B 643 + 0 558 37298 72 0 2 29 7 15 85 4 5 17 7 8 180 32 31 62 1 8 11 10 0 33 chain 39840 chr8 145138636 + 123485566 123486024 LTR2 463 + 0 463 34782 55 0 3 56 0 1 253 0 1 94 chain 24560 chr8 145138636 + 123491599 123491986 THE1A 353 + 0 353 49924 105 32 36 61 1 0 42 0 1 77 38 0 31 chain 25211 chr8 145138636 + 123551809 123552097 L1PA5 6144 + 5856 6144 48926 288 chain 8219 chr8 145138636 + 123575598 123575781 L1PB1 5432 + 5263 5424 74354 18 1 0 12 27 15 18 9 6 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 97983 chr8 145138636 + 123582310 123583516 L1PA8 5853 + 4653 5853 18526 354 0 2 145 1 0 199 0 2 209 2 1 43 2 0 58 1 0 13 1 0 14 2 0 46 3 2 21 1 0 91 chain 67629 chr8 145138636 + 123598173 123598927 L1PA5 6144 + 5380 6134 24539 253 0 1 400 1 0 100 chain 30137 chr8 145138636 + 123607396 123607807 L1P3 4156 + 3328 3743 41899 154 0 1 35 0 1 8 1 0 4 4 9 35 3 1 167 chain 4338 chr8 145138636 + 123625380 123625597 MER58A 224 + 0 223 89246 16 149 155 52 chain 10043 chr8 145138636 + 123687328 123687464 MER85 139 + 4 138 70322 83 1 0 14 5 4 33 chain 35974 chr8 145138636 + 123707437 123707846 L1PA7 6471 + 6052 6461 37424 409 chain 28447 chr8 145138636 + 123726667 123727194 L1PB1 5432 + 4929 5423 44196 174 1 2 10 8 5 14 1 0 12 1 0 10 2 0 3 2 0 9 14 12 40 2 1 15 1 0 45 1 0 4 39 28 14 7 4 15 2 0 24 1 0 21 1 0 13 1 0 14 1 0 5 chain 26931 chr8 145138636 + 123741679 123742006 AluYk4 311 + 0 311 46357 126 15 0 134 2 1 50 chain 33766 chr8 145138636 + 123746317 123746693 L1PA5 6144 + 5764 6140 38876 376 chain 29235 chr8 145138636 + 123752997 123753309 AluYb8 318 + 0 311 42991 132 1 0 179 chain 21397 chr8 145138636 + 123753788 123754127 L1MA6 2487 + 997 1325 54635 80 0 9 11 18 0 62 1 0 94 21 20 52 chain 23306 chr8 145138636 + 123821537 123821812 L1PA7 6471 + 6192 6467 51921 275 chain 41939 chr8 145138636 + 123903130 123903641 MER75 514 + 0 510 33400 499 1 0 11 chain 41794 chr8 145138636 + 124008512 124009118 L1PB1 5432 + 4344 4900 33493 164 0 4 97 0 4 17 1 5 127 68 5 37 2 3 93 chain 25063 chr8 145138636 + 124019972 124020334 THE1B 368 + 0 368 49179 41 5 20 53 0 1 81 5 3 50 0 1 8 7 1 31 3 0 78 chain 26145 chr8 145138636 + 124221829 124222126 AluYk4 311 + 1 298 47506 297 chain 51914 chr8 145138636 + 124231735 124232428 L1PB3 3668 + 1643 2309 28904 100 9 8 4 0 1 172 1 0 187 8 0 100 30 12 82 chain 18417 chr8 145138636 + 124328139 124328351 AluSc 308 + 16 228 58210 212 chain 27445 chr8 145138636 + 124363574 124363865 AluYa5 310 + 19 310 45647 291 chain 10144 chr8 145138636 + 124398716 124399302 L1PB3 3668 + 3352 3620 70121 33 8 7 62 12 11 13 354 33 17 3 1 29 1 13 10 1 0 10 11 8 15 1 0 6 chain 11259 chr8 145138636 + 124401807 124401949 LTR8 732 + 588 732 68153 27 1 3 114 chain 186471 chr8 145138636 + 124410690 124413117 L1PA5 6144 + 3881 5969 10277 161 1 0 855 338 0 1072 chain 22526 chr8 145138636 + 124421096 124421377 AluSc5 308 + 16 295 53077 48 2 0 231 chain 6978 chr8 145138636 + 124470073 124470186 MSTC 436 + 40 177 77675 69 4 20 20 7 15 13 chain 13762 chr8 145138636 + 124472440 124472636 MER107 203 + 0 203 63933 67 4 6 62 10 15 53 chain 4966 chr8 145138636 + 124658874 124658933 MLT1A0 366 + 253 312 85824 59 chain 36830 chr8 145138636 + 124763159 124763674 LTR10D 510 + 0 510 36861 58 10 7 13 2 0 23 1 0 39 0 1 128 1 2 84 1 0 25 0 1 105 4 3 21 chain 51587 chr8 145138636 + 124875993 124876590 L1P1 4361 + 3747 4341 28998 403 1 0 155 1 0 23 2 1 12 chain 69146 chr8 145138636 + 124908028 124908784 L1PA2 6032 + 5275 6031 24187 756 chain 42079 chr8 145138636 + 124909782 124910326 HERVIP10FH-int 2884 + 159 1198 33306 53 0 1 108 1 495 382 chain 65981 chr8 145138636 + 124932944 124933848 MER11B 1079 + 0 908 24966 220 0 5 26 0 1 6 4 1 55 0 4 225 53 52 82 7 11 7 1 0 38 0 1 38 6 0 136 chain 77152 chr8 145138636 + 124965593 124966462 MER11D 897 + 2 897 22271 462 0 1 109 0 23 206 0 2 92 chain 5173 chr8 145138636 + 125025341 125025407 L1PA8 5853 + 5690 5755 84801 52 1 0 13 chain 26074 chr8 145138636 + 125027246 125027753 L1PB1 5432 + 4943 5417 47618 160 1 2 9 3 0 24 26 20 11 3 1 5 0 3 8 3 0 34 19 17 43 1 0 16 4 1 15 8 0 15 8 5 14 2 0 24 1 0 21 1 0 13 1 0 9 1 0 4 chain 10611 chr8 145138636 + 125069111 125069377 MSTD 398 + 99 398 69205 60 87 116 52 1 0 9 15 20 42 chain 41422 chr8 145138636 + 125146436 125146895 L1PA4 6152 + 5681 6140 33720 459 chain 22912 chr8 145138636 + 125216359 125216650 AluSp 311 + 2 298 52492 170 3 8 118 chain 7051 chr8 145138636 + 125313021 125313100 L1PA8 5853 + 5770 5849 77430 79 chain 25647 chr8 145138636 + 125375754 125376051 AluSp 311 + 0 300 48247 91 0 3 206 chain 22890 chr8 145138636 + 125378405 125378693 AluSx4 309 + 10 294 52523 38 9 5 241 chain 25156 chr8 145138636 + 125401037 125401382 L1PA8 5853 + 5515 5853 49023 49 1 0 44 2 0 74 28 26 32 2 1 19 1 0 93 chain 25544 chr8 145138636 + 125532822 125533202 THE1B 368 + 0 368 48417 19 2 0 14 4 9 126 1 0 4 3 2 117 1 0 13 11 0 7 1 0 57 chain 563934 chr8 145138636 + 125582886 125588866 L1HS 6032 + 51 6032 116 23 0 1 5957 chain 42793 chr8 145138636 + 125639937 125640472 MER41A 554 + 0 554 32893 390 0 17 38 2 3 12 0 1 93 chain 4075 chr8 145138636 + 125652348 125652391 MLT1E1A 663 + 427 470 90928 43 chain 2825 chr8 145138636 + 125702443 125702479 MIRb 242 + 150 186 101435 36 chain 21386 chr8 145138636 + 125711091 125711444 THE1B 368 + 0 368 54652 22 0 1 21 5 20 17 49 50 41 3 2 26 2 0 54 0 1 113 chain 120190 chr8 145138636 + 125711444 125713000 THE1B-int 1605 + 0 1594 15504 423 13 38 187 5 3 55 2 4 6 2 0 43 1 13 143 0 10 663 7 0 6 chain 25395 chr8 145138636 + 125713004 125713363 THE1B 368 + 0 368 48631 44 4 19 109 1 0 28 12 10 83 1 0 27 2 0 48 chain 4107 chr8 145138636 + 125764693 125764751 L1MA4 2864 + 2753 2809 90721 13 2 0 43 chain 34077 chr8 145138636 + 125812548 125813005 MLT2A1 477 + 0 472 38648 168 5 2 9 0 1 25 0 1 176 0 2 14 19 33 41 chain 14273 chr8 145138636 + 125841938 125842120 L1PREC2 3366 + 1852 2035 63233 147 0 1 35 chain 12007 chr8 145138636 + 125846632 125846864 Tigger3 1187 + 934 1166 66829 44 1 0 105 63 64 19 chain 20798 chr8 145138636 + 125850704 125850995 L1PA8 5853 + 5566 5853 55362 40 7 5 68 1 0 81 2 1 92 chain 139529 chr8 145138636 + 125953684 125955577 L1PA8 5853 + 3960 5853 13137 52 49 51 381 0 3 205 0 2 8 0 1 6 1 0 56 1 2 279 4 7 44 0 1 92 48 45 222 1 0 147 1 0 44 2 0 71 1 0 5 12 4 7 0 7 5 1 0 33 2 1 19 1 0 93 chain 44235 chr8 145138636 + 125986714 125987653 LTR71B 605 + 0 605 31993 98 19 0 30 4 0 3 0 11 7 2 3 401 329 6 46 chain 28957 chr8 145138636 + 125989332 125989633 AluYg6 310 + 0 301 43396 301 chain 39978 chr8 145138636 + 125994212 125994823 LTR71B 605 + 0 605 34673 68 13 14 41 4 3 9 6 0 10 1 2 5 7 0 219 19 23 149 14 15 17 0 1 29 chain 45685 chr8 145138636 + 126007721 126008234 MER9a1 513 + 0 513 31216 513 chain 382048 chr8 145138636 + 126008832 126013477 HERVK9-int 4720 + 6 4719 5448 17 27 13 14 7 4 4 1 0 69 1 0 5 1 0 30 1 0 180 1 0 4 0 1 658 3 2 743 45 9 502 0 1 503 1 2 168 0 3 754 0 14 89 9 8 175 0 12 352 0 96 281 chain 42549 chr8 145138636 + 126013478 126013982 MER9a1 513 + 0 513 33035 383 1 2 33 0 8 87 chain 112052 chr8 145138636 + 126039763 126041230 THE1B-int 1605 + 0 1591 16806 12 13 15 161 9 5 239 7 32 135 0 100 633 0 1 258 chain 54423 chr8 145138636 + 126108003 126108700 L1PA8 5853 + 5127 5847 28075 125 0 4 108 0 25 62 0 1 112 2 1 43 2 0 71 1 0 9 1 0 56 2 1 13 4 3 86 chain 49813 chr8 145138636 + 126126841 126127408 L1PA7 6471 + 5902 6470 29634 366 0 1 201 chain 10646 chr8 145138636 + 126139636 126139761 MER85 139 + 4 139 69133 85 0 10 40 chain 34252 chr8 145138636 + 126141874 126142314 MER4A1 472 + 1 461 38523 224 0 21 114 7 6 95 chain 110231 chr8 145138636 + 126193515 126194775 L1PA5 6144 + 4250 5506 17049 1044 1 0 133 4 1 78 chain 549979 chr8 145138636 + 126199419 126205755 L1PA3long 6157 + 1 6157 750 139 12 26 880 0 1 953 0 1 1417 0 1 100 0 1 389 1 3 143 1 0 919 208 5 363 0 4 811 chain 24225 chr8 145138636 + 126292632 126292914 AluY 311 + 18 301 50449 114 0 1 168 chain 94488 chr8 145138636 + 126338134 126340424 L1PB2 3958 + 34 1387 18966 18 19 14 18 5 0 15 14 9 32 2 0 32 14 0 9 1 0 46 5 2 31 0 1 185 924 6 20 14 10 18 0 1 249 0 1 165 0 1 171 7 15 145 0 1 15 0 1 32 0 1 35 0 5 49 chain 538022 chr8 145138636 + 126341585 126347593 L1PA3long 6157 + 1 6156 1450 151 14 15 603 0 108 8 0 20 1502 0 1 98 0 1 67 0 4 479 1 0 237 1 2 1063 0 4 275 0 6 737 1 3 771 chain 3325 chr8 145138636 + 126364601 126364641 Tigger4a 237 - 189 228 96808 19 1 0 20 chain 7134 chr8 145138636 + 126418831 126419489 MLT1C 463 + 16 378 77156 15 27 35 53 11 5 26 421 122 23 2 0 5 49 52 26 chain 434617 chr8 145138636 + 126458030 126463437 L1PA7 6471 + 32 6470 4674 58 0 1040 122 8 28 4 1 0 278 0 1 196 6 5 271 1 0 192 2 1 412 0 1 74 18 0 6 0 1 827 0 4 32 0 2 45 14 16 280 9 10 66 10 6 87 1 2 143 5 4 241 0 1 177 0 8 308 1 0 4 0 1 109 2 1 74 4 0 451 0 3 76 0 2 291 29 0 77 5 5 377 1 6 12 chain 7643 chr8 145138636 + 126464927 126465014 LTR24C 604 + 473 560 75767 87 chain 9065 chr8 145138636 + 126504762 126504869 U6 107 + 0 107 72407 107 chain 16837 chr8 145138636 + 126523765 126524079 L1PB1 5432 + 5137 5420 59990 9 1 0 12 4 0 9 2 0 53 2 1 15 1 0 44 1 0 9 21 8 30 24 19 24 1 0 21 1 0 13 1 0 16 chain 32782 chr8 145138636 + 126567211 126568305 LTR43 600 + 0 576 39683 21 12 23 56 60 59 56 0 3 6 2 0 114 11 15 91 2 0 18 537 0 29 0 6 79 chain 59561 chr8 145138636 + 126580958 126581692 LTR17 781 + 0 768 26497 32 0 12 283 1 0 379 6 29 33 chain 10574 chr8 145138636 + 126639251 126639390 MER85 139 + 1 139 69278 95 10 9 34 chain 126217 chr8 145138636 + 126676406 126677970 THE1A-int 1579 + 0 1574 14521 15 0 2 170 4 0 396 0 1 799 1 12 179 chain 13046 chr8 145138636 + 126679534 126679761 MER30 238 + 0 235 65034 115 4 15 44 30 0 10 1 28 23 chain 20596 chr8 145138636 + 126683075 126683356 AluSc 308 + 9 293 55639 44 2 1 81 6 10 148 chain 18799 chr8 145138636 + 126699302 126699544 THE1A-int 1579 + 591 831 57783 73 8 7 49 1 0 111 chain 59050 chr8 145138636 + 126699544 126700283 THE1A-int 1579 + 837 1570 26651 640 11 5 88 chain 162543 chr8 145138636 + 126709174 126711116 L1PA7 6471 + 4504 6469 11576 120 0 1 416 0 8 149 0 1 298 0 1 88 3 9 31 0 4 167 1 2 85 0 1 584 chain 20804 chr8 145138636 + 126751413 126751774 THE1B 368 + 0 356 55354 14 2 0 33 0 1 59 29 31 39 39 32 71 0 2 11 1 0 63 chain 32610 chr8 145138636 + 126777490 126777839 L1PA2 6032 + 5682 6032 39855 197 0 1 152 chain 45635 chr8 145138636 + 126778952 126779515 LTR19B 566 + 0 566 31247 171 1 2 120 4 5 215 0 1 52 chain 23600 chr8 145138636 + 126783651 126783903 L1PA2 6032 + 5490 5742 51432 252 chain 4464 chr8 145138636 + 126866913 126866993 MADE1 96 + 0 96 88529 45 1 17 34 chain 42290 chr8 145138636 + 126901365 126901896 L1PA7 6471 + 5943 6470 33199 39 4 2 473 1 0 9 1 0 4 chain 18748 chr8 145138636 + 126955337 126955571 L1PA6 6164 + 5899 6134 57847 93 1 0 4 0 1 13 0 1 123 chain 7375 chr8 145138636 + 126955840 126955931 MER30 238 + 2 93 76461 91 chain 59235 chr8 145138636 + 127024824 127025481 L1PA3long 6157 + 5500 6157 26592 657 chain 13101 chr8 145138636 + 127033391 127033537 L1PA5 6144 + 5998 6144 64926 146 chain 260367 chr8 145138636 + 127044006 127048239 L1PA7 6471 + 3330 6469 7962 152 17 17 96 0 1 2006 0 1 21 6 5 16 1101 1 360 4 5 440 0 4 14 chain 73696 chr8 145138636 + 127046336 127047414 MER11A 1151 + 16 1151 23170 39 0 99 22 8 0 54 1 0 64 4 0 127 24 25 92 0 1 138 0 1 132 0 26 26 43 0 19 18 0 36 6 7 59 0 1 48 4 3 22 0 2 92 chain 49265 chr8 145138636 + 127091034 127091623 LTR10C 591 + 0 591 29846 503 5 7 81 chain 23444 chr8 145138636 + 127105226 127105517 AluSg7 307 + 0 300 51688 32 0 8 91 0 1 168 chain 33448 chr8 145138636 + 127109656 127110025 L1PA3long 6157 + 3884 4254 39132 44 0 1 325 chain 51820 chr8 145138636 + 127131653 127132270 L1PA7 6471 + 5794 6411 28934 617 chain 4276 chr8 145138636 + 127132270 127132319 L1PA7 6471 + 6415 6464 89645 49 chain 17051 chr8 145138636 + 127157315 127157673 L1PB1 5432 + 5107 5430 59754 7 3 0 24 1 0 8 1 0 12 17 11 47 10 9 11 1 0 43 2 1 10 9 6 12 9 0 18 3 1 5 1 0 14 2 0 46 1 0 12 1 0 10 1 0 12 1 0 4 chain 122104 chr8 145138636 + 127182798 127184387 L1PA8 5853 + 4269 5853 15179 65 1 0 182 0 5 336 0 1 125 2 1 22 1 0 3 2 0 85 0 1 367 19 23 5 0 2 72 1 0 44 4 2 66 4 3 10 1 0 11 17 0 44 1 0 16 1 0 37 0 10 10 2 3 33 chain 2951 chr8 145138636 + 127186773 127186816 MLT1F2 592 + 506 543 100360 26 6 0 11 chain 43716 chr8 145138636 + 127244397 127245016 LTR66 600 + 0 600 32312 180 1 0 34 1 8 176 66 42 32 2 1 127 chain 348024 chr8 145138636 + 127311575 127315431 L1HS 6032 + 1 3853 5933 477 4 0 3375 chain 129837 chr8 145138636 + 127315924 127317904 SVA_F 1814 + 335 1814 14063 366 0 40 159 49 0 48 47 14 219 331 0 53 124 0 569 4 0 11 chain 3954 chr8 145138636 + 127316546 127316593 SVA_F 1814 + 1012 1138 55744 26 1 79 4 0 1 16 chain 16130 chr8 145138636 + 127316812 127317130 SVA_F 1814 + 892 1171 50332 55 0 15 63 51 0 103 2 0 10 1 0 33 chain 2258 chr8 145138636 + 127316957 127316981 SVA_F 1814 + 1177 1201 72290 24 chain 2189 chr8 145138636 + 127317196 127317259 SVA_F 1814 + 1058 1122 56876 36 0 1 27 chain 1420 chr8 145138636 + 127317259 127317287 SVA_F 1814 + 1171 1200 50332 21 0 1 7 chain 201509 chr8 145138636 + 127318680 127320872 L1PA2 6032 + 3837 6032 9660 535 0 1 885 0 2 772 chain 3943 chr8 145138636 + 127350655 127350720 Arthur1B 1073 + 760 826 91815 28 12 13 25 chain 212273 chr8 145138636 + 127379834 127382117 L1PA2 6032 + 3744 6027 9264 2283 chain 30126 chr8 145138636 + 127431702 127432147 LTR7 482 + 0 482 41917 48 4 10 28 50 0 15 29 79 50 0 31 221 chain 288575 chr8 145138636 + 127432149 127435758 HERVH-int 3825 + 0 3825 7176 240 0 5 169 2 0 87 0 21 8 65 0 15 30 59 14 1 0 13 3 0 25 1 0 27 2 0 15 2 1 12 31 19 49 1 0 906 4 31 714 0 1 67 0 11 236 0 1 4 2 1 367 43 253 454 chain 38509 chr8 145138636 + 127437014 127437452 LTR7 482 + 0 470 35700 246 1 32 51 0 1 140 chain 4166 chr8 145138636 + 127447752 127447804 MER20 218 + 159 211 90345 52 chain 16321 chr8 145138636 + 127451500 127451864 THE1B 368 + 3 368 60605 97 37 38 22 77 83 30 3 0 33 2 0 5 2 1 56 chain 50219 chr8 145138636 + 127502932 127503529 L1PA7 6471 + 5862 6461 29477 406 0 1 38 1 2 152 chain 28109 chr8 145138636 + 127555440 127555784 L1PA5 6144 + 5773 6121 44699 219 9 13 116 chain 32854 chr8 145138636 + 127557781 127558212 MLT2A1 477 + 0 469 39626 137 4 5 23 4 8 151 1 0 79 1 35 31 chain 88563 chr8 145138636 + 127597761 127598869 L1PA6 6164 + 5050 6161 19929 140 1 2 123 7 9 444 37 0 63 0 1 38 0 8 100 0 31 145 3 0 7 chain 66793 chr8 145138636 + 127630118 127630830 SVA_E 1901 + 1040 1879 24748 55 0 127 657 chain 32509 chr8 145138636 + 127653354 127653787 MLT2A1 477 + 4 477 39936 139 0 4 22 4 1 11 1 2 21 0 1 180 3 0 5 10 50 37 chain 11359 chr8 145138636 + 127658603 127658799 L1PB 1623 + 1250 1446 67990 28 21 18 4 1 0 89 4 8 49 chain 8004 chr8 145138636 + 127698189 127698362 MER5A 189 + 5 188 74878 67 26 12 35 8 29 10 9 10 13 0 2 5 chain 39042 chr8 145138636 + 127773401 127773912 L1PA8 5853 + 5346 5853 35324 31 0 2 185 1 0 46 2 0 55 15 14 61 2 1 19 1 0 93 chain 33162 chr8 145138636 + 127830648 127831212 MLT2A1 477 + 0 477 39395 142 0 1 25 1 5 151 2 1 59 127 36 57 chain 113528 chr8 145138636 + 127834159 127835612 L1PA8 5853 + 4433 5853 16608 181 0 1 372 0 4 6 28 10 88 14 0 31 0 1 435 1 0 32 0 1 5 1 0 8 2 0 70 2 1 8 2 1 52 2 1 19 1 0 93 chain 8092 chr8 145138636 + 127872434 127872592 L1MA3 4352 + 4204 4352 74656 32 4 0 21 3 1 24 9 7 28 1 0 11 2 1 23 chain 6974 chr8 145138636 + 127948620 127948784 MLT1B 390 + 140 299 77701 9 5 0 4 4 0 10 3 0 8 22 28 69 10 11 20 chain 12833 chr8 145138636 + 127999130 127999277 U1 164 + 0 147 65387 147 chain 9094 chr8 145138636 + 128005260 128005370 MER30 238 + 133 238 72358 5 2 0 61 3 0 39 chain 6992 chr8 145138636 + 128020244 128020768 MLT1E2 623 + 65 600 77635 8 5 0 40 13 6 17 351 372 19 0 1 10 21 22 40 chain 6370 chr8 145138636 + 128095535 128095609 MER58A 224 + 44 118 79777 74 chain 3884 chr8 145138636 + 128097508 128097557 MER58C 217 + 160 209 92263 49 chain 4755 chr8 145138636 + 128119475 128119532 LTR12_ 688 + 0 57 86930 57 chain 306541 chr8 145138636 + 128278657 128283105 L1PB1 5432 + 977 5422 6687 48 0 5 164 0 1 108 0 3 22 26 25 52 12 15 245 0 1 130 4 5 446 2 0 150 0 3 111 54 103 146 0 1 77 1 0 167 0 1 519 25 26 20 26 26 130 2 5 146 6 5 41 9 4 68 5 14 249 0 2 3 2 0 33 9 8 70 6 7 71 0 3 170 3 0 216 0 1 125 2 0 111 0 3 21 79 19 19 0 3 14 5 1 9 2 0 33 1 2 17 2 1 15 1 0 45 1 0 15 3 0 29 2 0 7 17 14 24 1 0 14 8 7 13 1 0 18 chain 541094 chr8 145138636 + 128343643 128349672 L1PA3long 6157 + 0 6157 1273 153 0 1 617 9 133 1185 0 1 2605 1 2 313 0 1 1146 chain 28690 chr8 145138636 + 128356935 128357323 L1PA8 5853 + 5462 5853 43815 59 0 3 40 1 0 45 2 0 70 1 0 18 0 6 37 2 1 19 2 1 92 chain 9499 chr8 145138636 + 128375034 128375217 LTR12F 595 + 0 284 71475 25 0 1 41 5 148 25 43 0 44 chain 83815 chr8 145138636 + 128375227 128376333 HERV9-int 5642 + 4528 5623 20844 702 1 0 56 0 1 120 0 12 38 5 3 33 21 19 13 1 0 27 11 15 17 1 0 14 31 10 15 chain 2797 chr8 145138636 + 128382510 128382603 LTR12F 595 + 235 284 101664 11 2 1 19 43 0 18 chain 58806 chr8 145138636 + 128630376 128631068 L1PA5 6144 + 5167 5838 26738 502 0 2 72 23 0 95 chain 19257 chr8 145138636 + 128661058 128661279 L1PA7 6471 + 6248 6466 57284 209 3 0 9 chain 545987 chr8 145138636 + 128714351 128720388 L1PA2 6032 + 0 6031 971 622 15 0 74 0 7 215 1 0 876 0 5 392 1 0 793 0 1 1013 0 2 1026 4 0 1005 chain 537874 chr8 145138636 + 128744605 128750627 L1PA3long 6157 + 0 6152 1459 152 0 1 109 9 0 105 0 1 400 8 136 29 1 5 311 1 0 1326 2 0 689 0 4 1224 0 2 149 0 1 484 0 1 1023 chain 501085 chr8 145138636 + 128759857 128765726 L1PA5 6144 + 3 5877 3097 557 10 9 131 7 0 535 1 2 141 19 16 1801 2 1 414 0 1 607 5 6 123 0 4 705 0 9 284 0 1 527 chain 6941 chr8 145138636 + 128766050 128766180 L1MA3 4352 + 3901 4035 77805 5 1 0 33 28 33 63 chain 4401 chr8 145138636 + 128792048 128792149 MER58A 224 + 115 221 88884 4 1 0 16 32 38 48 chain 542737 chr8 145138636 + 128801232 128807374 L1PA4 6152 + 0 6152 1157 950 0 4 153 0 3 1203 1 0 707 0 1 162 1 0 2855 0 1 97 0 3 13 chain 5861 chr8 145138636 + 128819795 128819875 MADE1 96 + 0 96 81647 32 1 17 47 chain 6723 chr8 145138636 + 128875596 128875690 MSTA 426 + 3 98 78563 20 3 4 71 chain 29649 chr8 145138636 + 128914458 128914868 LTR7 482 + 0 482 42432 68 9 47 110 7 8 16 1 0 15 0 31 10 0 3 174 chain 312525 chr8 145138636 + 128914870 128918653 HERVH-int 3825 + 0 3825 6559 279 0 2 52 2 1 199 1 0 8 1 0 5 28 58 12 1 0 15 21 18 48 1 0 82 1 0 419 1 2 800 0 4 181 0 1 24 0 2 1065 0 4 274 0 7 263 chain 5309 chr8 145138636 + 128925560 128925664 L1MC2 1988 + 1775 1876 84155 40 9 10 22 11 7 22 chain 38689 chr8 145138636 + 128977156 128977621 L1PA7 6471 + 5992 6464 35568 397 0 7 68 chain 14185 chr8 145138636 + 128995780 128995979 L1PA7 6471 + 6268 6465 63337 13 8 0 15 10 18 145 2 0 6 chain 15689 chr8 145138636 + 129094389 129094722 MLT1A0 366 + 30 366 61413 100 123 126 110 chain 24113 chr8 145138636 + 129137813 129138201 THE1D 372 + 0 372 50627 41 0 1 4 1 0 29 19 0 20 9 10 61 23 26 144 2 1 35 chain 47317 chr8 145138636 + 129183706 129184234 L1PA4 6152 + 5615 6143 30534 528 chain 20108 chr8 145138636 + 129236351 129236673 THE1C 375 + 1 328 56251 172 30 33 67 23 25 30 chain 23173 chr8 145138636 + 129261298 129261661 THE1B 368 + 0 368 52115 12 3 1 12 1 0 12 0 5 27 8 5 98 2 0 20 2 0 52 7 0 84 3 20 20 chain 5997 chr8 145138636 + 129275875 129275948 L1MB5 1630 + 1392 1465 81084 73 chain 26678 chr8 145138636 + 129287505 129288401 L1PB3 3668 + 3174 3595 46717 33 0 1 56 18 9 17 1 0 101 1 0 39 439 0 45 23 7 18 2 0 3 1 0 25 3 1 37 7 3 12 2 1 13 chain 6619 chr8 145138636 + 129313334 129313482 MER20 218 + 50 196 78902 18 18 17 4 1 0 51 16 19 5 3 0 32 chain 493329 chr8 145138636 + 129324305 129329792 L1PA3long 6157 + 6 6150 3335 88 0 526 158 1 129 1411 5 1 72 0 3 477 0 1 3040 0 3 235 chain 13748 chr8 145138636 + 129331577 129331741 L1PA7 6471 + 6297 6461 63950 164 chain 134371 chr8 145138636 + 129399898 129401710 L1PA11 4918 + 2801 4578 13610 40 10 9 347 1 2 245 2 0 222 1 0 570 3 0 95 2 0 62 2 1 13 2 0 67 2 0 14 1 0 20 9 0 9 8 3 10 29 24 13 2 0 11 chain 5567 chr8 145138636 + 129456549 129456616 MLT2D 439 + 55 122 82955 67 chain 56735 chr8 145138636 + 129492190 129492913 L1PA8 5853 + 5134 5853 27345 71 0 3 356 1 0 46 2 0 69 1 0 9 1 0 52 6 5 15 1 0 93 chain 35737 chr8 145138636 + 129553181 129553783 L1PB1 5432 + 4871 5422 37573 29 0 1 145 0 1 5 1 0 51 11 0 11 7 0 24 27 21 10 2 0 51 2 1 16 1 0 43 1 0 16 3 0 8 12 4 19 6 0 5 1 0 14 2 0 24 1 0 21 1 0 13 2 1 17 chain 151025 chr8 145138636 + 129578391 129580204 L1PA7 6471 + 4659 6469 12288 9 0 4 313 2 1 235 0 1 392 4 0 230 0 1 452 3 1 9 1 6 8 5 0 138 2 0 10 chain 27125 chr8 145138636 + 129618025 129618380 THE1A 353 + 0 353 46090 84 0 1 4 1 0 3 1 0 17 2 1 243 chain 25253 chr8 145138636 + 129621120 129621390 L1PA3long 6157 + 5628 5898 48868 270 chain 24080 chr8 145138636 + 129621391 129621650 L1PA3long 6157 + 5898 6157 50681 259 chain 28788 chr8 145138636 + 129639651 129639959 AluYb9 318 + 0 306 43650 126 2 0 180 chain 141208 chr8 145138636 + 129717455 129719195 L1PA7 6471 + 4744 6468 13008 101 0 1 65 1 0 4 0 1 33 1 0 157 5 3 329 2 1 182 1 0 17 1 2 79 5 0 44 3 0 352 1 0 346 4 0 7 chain 14143 chr8 145138636 + 129732485 129732683 L1PA15-16 3068 + 226 436 63392 22 5 19 85 2 0 84 chain 516424 chr8 145138636 + 129732690 129738802 L1PA6 6164 + 0 6152 2449 414 3 0 6 1 3 37 6 5 322 0 17 295 16 13 340 0 1 275 1 0 248 7 20 48 0 1 226 0 6 5 0 1 50 0 1 854 0 2 237 10 23 183 0 4 158 0 1 201 1 0 962 22 1 436 4 0 220 1 10 59 0 3 464 chain 135119 chr8 145138636 + 129758029 129760007 L1MA2 4263 + 2081 4054 13535 157 10 10 284 2 1 40 0 1 4 8 7 46 69 66 78 1 0 121 4 7 167 0 1 54 7 8 239 1 0 212 6 3 75 1 0 84 0 2 41 20 17 108 1 0 32 17 19 89 chain 7370 chr8 145138636 + 129802624 129802824 AluJr4 308 + 64 272 76478 38 60 58 5 1 0 13 3 0 5 6 22 13 0 1 32 3 0 21 chain 25538 chr8 145138636 + 129814954 129815316 THE1C 375 + 0 375 48428 100 0 3 22 3 0 10 0 4 27 3 4 12 1 2 19 0 1 54 1 0 92 1 0 7 0 8 10 chain 2802 chr8 145138636 + 129834665 129834695 HAL1 992 + 445 475 101633 30 chain 110805 chr8 145138636 + 129905951 129907196 L1PA5 6144 + 4484 5730 16966 40 2 0 816 0 1 32 1 3 354 chain 50906 chr8 145138636 + 129934484 129935129 PABL_A 660 + 0 660 29237 56 0 4 21 0 9 29 0 1 220 1 0 229 1 0 61 6 9 21 chain 2906 chr8 145138636 + 130032605 130032638 MER65A 464 + 0 33 100799 33 chain 2862 chr8 145138636 + 130043635 130043667 L1MB7 1623 + 1388 1420 101133 32 chain 47677 chr8 145138636 + 130104149 130104721 LTR10C 591 + 3 591 30406 305 0 3 12 2 0 48 0 15 205 chain 22522 chr8 145138636 + 130130888 130131152 AluSc8 310 + 14 280 53089 119 0 2 145 chain 2634 chr8 145138636 + 130370690 130370723 L1MB7 1623 + 1452 1484 102808 27 1 0 5 chain 11466 chr8 145138636 + 130377116 130377368 L1PB1 5432 + 5199 5422 67804 21 2 1 14 2 1 45 1 0 15 3 0 6 16 6 19 2 0 5 1 0 14 7 0 24 1 0 14 12 11 9 1 0 18 chain 81863 chr8 145138636 + 130393752 130394811 MER11B 1079 + 1 1073 21271 258 3 0 301 36 35 50 1 2 39 0 4 9 0 16 18 0 1 29 11 5 285 1 2 18 chain 6757 chr8 145138636 + 130471818 130471921 L1MA3 4352 + 3735 3845 78452 14 8 16 62 1 0 18 chain 23002 chr8 145138636 + 130512431 130512800 THE1D 372 + 0 372 52357 54 9 0 81 0 4 33 58 62 125 0 4 9 chain 4211 chr8 145138636 + 130573609 130573675 MLT2A2 560 + 506 560 90058 15 12 0 39 chain 28249 chr8 145138636 + 130601404 130601770 THE1B 368 + 0 368 44486 12 3 1 27 0 5 127 2 1 195 chain 2698 chr8 145138636 + 130609494 130609524 MLT2C1 407 + 12 42 102362 30 chain 21839 chr8 145138636 + 130613203 130613566 THE1D 372 + 0 360 54053 57 29 0 8 1 11 59 6 10 16 0 4 23 6 8 42 2 8 114 chain 11228 chr8 145138636 + 130617298 130617525 L1PA13 3608 + 113 321 68205 23 5 2 25 1 0 14 3 0 23 28 18 68 8 6 29 chain 28107 chr8 145138636 + 130676488 130676788 AluYa5 310 + 0 299 44704 123 1 0 176 chain 3394 chr8 145138636 + 130682177 130682216 MLT1I 406 + 226 265 96125 39 chain 26213 chr8 145138636 + 130704879 130705158 AluYb8 318 + 28 307 47398 279 chain 90213 chr8 145138636 + 130718068 130719597 L1PB1 5432 + 4123 5420 19644 75 1 0 251 0 6 153 19 13 4 1 0 80 3 5 335 1 2 5 1 0 51 171 0 11 1 0 24 1 0 9 1 0 9 17 11 53 2 1 16 30 0 44 1 0 14 1 0 5 19 8 19 8 5 14 2 0 24 1 0 21 1 0 13 2 1 15 chain 4305 chr8 145138636 + 130734844 130734896 U3 216 + 13 65 89461 52 chain 78789 chr8 145138636 + 130746491 130747448 LTR13A 966 + 0 966 21923 47 6 7 73 0 1 22 0 3 49 1 5 559 1 0 178 0 1 21 chain 115974 chr8 145138636 + 130774023 130775575 THE1B-int 1605 + 13 1589 16240 109 0 19 20 40 0 108 0 3 16 0 3 6 4 1 69 1 0 63 1 26 188 1 0 4 0 1 370 0 1 135 4 21 413 chain 29301 chr8 145138636 + 130807703 130808012 AluYa5 310 + 1 310 42894 309 chain 26089 chr8 145138636 + 130879853 130880220 THE1B 368 + 0 367 47589 15 3 1 24 0 5 43 8 7 73 1 0 74 2 1 124 chain 40970 chr8 145138636 + 130916498 130916983 MER9a1 513 + 0 513 33991 167 0 1 76 1 23 77 0 5 164 chain 30364 chr8 145138636 + 131021514 131021889 THE1C 375 + 0 375 41702 375 chain 89839 chr8 145138636 + 131065988 131066971 L1PA3long 6157 + 2161 3145 19714 926 0 1 57 chain 184792 chr8 145138636 + 131080730 131082796 L1PA4 6152 + 3892 5964 10351 48 0 1 697 0 5 1321 chain 9144 chr8 145138636 + 131091802 131091907 Tigger1 2417 + 2251 2356 72249 105 chain 24904 chr8 145138636 + 131247594 131247940 THE1A 353 + 0 342 49425 110 1 0 145 0 1 43 19 15 28 chain 537670 chr8 145138636 + 131250361 131256471 L1PA3long 6157 + 6 6149 1473 120 0 14 181 0 4 610 0 4 287 5 1 22 1 0 162 0 9 1599 0 1 151 1 0 1932 4 0 201 0 4 698 1 8 135 chain 532100 chr8 145138636 + 131262094 131269341 L1PA4 6152 + 0 6138 1744 512 0 1 63 1 0 259 17 0 401 1 0 575 0 2 46 2 3 281 0 1 5 1 0 561 0 1 124 1 5 217 0 1 110 1 2 33 1 0 61 1105 0 955 0 1 127 0 4 1787 chain 28628 chr8 145138636 + 131265375 131265712 L1PA3long 6157 + 5059 5400 43904 251 1 5 85 chain 66950 chr8 145138636 + 131265712 131266465 L1PA3long 6157 + 5403 6157 24714 604 1 2 148 chain 82666 chr8 145138636 + 131297000 131297904 L1PA3long 6157 + 5245 6149 21088 904 chain 284708 chr8 145138636 + 131310566 131314237 HERVH-int 3825 + 0 3825 7294 530 1 0 11 1 0 4 0 1 24 1 0 10 1 0 12 64 12 14 1 0 13 29 25 123 1 0 650 9 0 29 0 2 10 1 0 188 21 20 62 0 2 37 0 1 53 0 1 252 8 13 41 0 4 159 0 1 168 0 2 605 0 2 39 8 218 72 39 39 149 0 2 140 12 6 79 chain 117154 chr8 145138636 + 131323617 131324942 L1PA4 6152 + 4191 5513 16032 444 1 0 741 2 0 137 chain 87437 chr8 145138636 + 131337627 131338870 HSMAR1 1287 + 8 1248 20144 117 3 0 29 0 11 43 9 7 62 6 1 286 8 7 64 39 37 439 21 20 117 chain 42208 chr8 145138636 + 131357443 131357983 MER9a2 513 + 0 511 33244 101 0 1 187 34 0 92 0 4 126 chain 16276 chr8 145138636 + 131451963 131452160 L1PA7 6471 + 6273 6468 60646 186 2 0 9 chain 17418 chr8 145138636 + 131473145 131473378 THE1D-int 1627 + 0 234 59331 193 14 15 26 chain 110951 chr8 145138636 + 131486870 131488581 LTR12C 1709 + 0 1709 16944 22 0 1 36 19 25 165 31 46 73 31 32 62 30 31 112 0 1 231 1 0 11 41 0 220 8 71 76 46 15 91 0 2 162 29 6 50 1 0 71 18 23 74 chain 129140 chr8 145138636 + 131549736 131551143 L1PA3long 6157 + 4750 6157 14128 1407 chain 60603 chr8 145138636 + 131596070 131596741 L1PA5 6144 + 4083 4754 26201 671 chain 536417 chr8 145138636 + 131635172 131641188 L1PA3long 6157 + 4 6156 1541 149 1 2 621 0 128 1422 1 0 370 0 1 716 12 12 987 0 5 27 0 1 129 0 1 66 1 0 1009 0 1 505 chain 14932 chr8 145138636 + 131644135 131644324 HSMAR1 1287 + 1083 1279 62347 127 0 4 24 0 3 38 chain 317401 chr8 145138636 + 131741153 131744965 HERVH-int 3825 + 0 3825 6462 319 15 14 43 0 2 68 1 0 86 5 0 37 2 1 10 1 0 24 1 52 25 42 0 16 1 0 82 1 0 907 0 5 365 1 0 108 0 1 136 0 1 1303 0 7 213 chain 551255 chr8 145138636 + 131770949 131776926 L1PA2 6032 + 48 6028 657 2218 0 3 3759 chain 49481 chr8 145138636 + 131786585 131787242 LTR12_ 688 + 0 688 29774 54 1 2 190 6 5 153 10 8 133 3 36 107 chain 247992 chr8 145138636 + 131820436 131823437 HERVH-int 3825 + 826 3825 8288 746 5 0 165 1 3 39 0 1 216 0 2 88 10 15 208 18 7 180 8 9 762 0 1 140 36 37 156 0 1 223 chain 25099 chr8 145138636 + 131824695 131825105 LTR7 482 + 0 482 49118 68 30 18 15 16 66 57 8 40 155 12 14 49 chain 108945 chr8 145138636 + 131830311 131831607 L1PA7 6471 + 5176 6469 17189 445 1 0 144 0 1 27 1 0 650 0 1 15 3 0 10 chain 21963 chr8 145138636 + 131852905 131853164 L1PA7 6471 + 5863 6131 53892 241 0 9 18 chain 27563 chr8 145138636 + 131853164 131853491 L1PA7 6471 + 6132 6459 45496 327 chain 23138 chr8 145138636 + 131855570 131855822 L1PA5 6144 + 5885 6137 52163 252 chain 163409 chr8 145138636 + 131871215 131872995 L1PA3long 6157 + 4378 6157 11519 1520 1 0 259 chain 466449 chr8 145138636 + 131960878 131966212 L1PA4 6152 + 803 6143 3950 98 1 0 138 0 1 519 0 2 936 7 8 92 10 0 451 1 0 1478 2 4 108 0 5 22 1 0 30 0 1 568 31 33 4 0 1 6 0 3 727 0 1 104 chain 209693 chr8 145138636 + 132150792 132154191 MER61-int 3695 + 0 3346 9358 28 16 0 22 7 6 9 0 1 63 0 6 36 22 9 11 40 1 49 1 0 31 1 0 50 9 5 5 3 0 24 65 56 60 0 1 23 113 117 182 1 5 55 2 0 249 0 4 15 0 3 14 8 9 57 0 11 120 0 1 2 2 0 63 22 25 114 0 1 128 0 1 113 8 6 340 0 2 95 2 0 236 0 1 11 22 37 248 0 5 25 20 8 29 5 6 15 169 160 143 9 5 17 0 2 170 chain 6295 chr8 145138636 + 132211328 132211409 LTR37A 408 + 69 149 80021 59 1 0 21 chain 45148 chr8 145138636 + 132221697 132222205 L1PA6 6164 + 4785 5294 31492 456 0 1 52 chain 5259 chr8 145138636 + 132286521 132286676 MSTB2-int 240 + 83 235 84397 28 6 5 35 61 59 25 chain 5484 chr8 145138636 + 132286820 132287068 MSTB2 466 + 177 444 83294 35 9 0 20 146 160 16 0 14 22 chain 7570 chr8 145138636 + 132303972 132304133 L1PB4 2604 + 2407 2570 75928 72 6 0 6 42 51 16 1 0 18 chain 24791 chr8 145138636 + 132312543 132312920 THE1D 372 + 0 372 49605 56 10 1 131 40 38 12 0 6 128 chain 52294 chr8 145138636 + 132340016 132340703 L1PA8 5853 + 5099 5772 28791 465 1 0 45 2 0 70 1 0 6 10 6 8 6 0 11 5 7 23 2 1 19 1 0 12 chain 14891 chr8 145138636 + 132474874 132475232 THE1D 372 + 0 372 62398 57 161 169 12 0 6 128 chain 264569 chr8 145138636 + 132598698 132601661 L1PA5 6144 + 2904 5873 7839 127 0 1 1069 0 2 239 2 3 283 1 0 340 0 1 387 0 1 455 0 1 60 chain 16746 chr8 145138636 + 132606031 132606326 Tigger3b 1229 + 43 337 60102 63 37 41 126 11 10 8 1 0 38 3 0 8 chain 9504 chr8 145138636 + 132606331 132606455 Tigger3 1187 + 422 571 71464 106 0 25 18 chain 162107 chr8 145138636 + 132617696 132619457 L1PA3long 6157 + 4395 6156 11606 1761 chain 25275 chr8 145138636 + 132631736 132632015 L1PA4 6152 + 5862 6141 48827 279 chain 466654 chr8 145138636 + 132644367 132649893 L1PA5 6144 + 0 5509 3941 135 31 45 958 10 8 23 9 0 66 0 1 116 0 5 398 0 1 554 15 8 596 47 24 90 0 1 60 0 4 393 0 4 1145 15 8 325 0 1 540 chain 32255 chr8 145138636 + 132652580 132652948 L1PA7 6471 + 6099 6468 40141 339 0 1 29 chain 6792 chr8 145138636 + 132665489 132665594 L1PA17 2846 + 2591 2693 78348 41 1 0 18 1 0 30 2 1 12 chain 12883 chr8 145138636 + 132678106 132678406 LTR56 451 + 0 274 65283 16 1 0 18 1 0 49 112 88 103 chain 23393 chr8 145138636 + 132757546 132757847 AluY 311 + 2 304 51771 28 6 7 85 1 0 4 0 1 177 chain 5693 chr8 145138636 + 132871886 132871954 Tigger3b 1229 + 36 104 82381 68 chain 12956 chr8 145138636 + 133235185 133235367 MER4A1 472 + 288 472 65172 103 11 13 68 chain 17689 chr8 145138636 + 133310360 133310607 L1PA8 5853 + 5608 5852 59020 68 4 3 57 6 5 19 2 1 91 chain 25493 chr8 145138636 + 133347458 133347791 THE1B 368 + 0 349 48494 44 15 30 98 1 0 26 0 2 149 chain 3631 chr8 145138636 + 133383032 133383087 MER58B 340 + 66 122 94180 29 5 6 21 chain 13158 chr8 145138636 + 133425182 133425368 THE1B 368 + 0 180 64843 22 6 0 35 1 2 110 1 0 11 chain 15486 chr8 145138636 + 133439074 133439376 MER2 342 + 24 298 61674 44 25 33 133 5 0 36 41 10 18 chain 9620 chr8 145138636 + 133535792 133535934 Tigger1 2417 + 2216 2350 71223 37 2 0 33 5 0 47 1 0 17 chain 7204 chr8 145138636 + 133578272 133578373 Tigger3 1187 + 171 269 76938 15 6 3 80 chain 30860 chr8 145138636 + 133607497 133607922 LTR7B 505 + 0 498 41259 103 3 12 60 0 38 11 4 28 26 0 2 42 0 1 44 1 0 21 0 1 52 14 13 44 chain 58367 chr8 145138636 + 133728921 133729552 L1PA2 6032 + 5401 6032 26843 631 chain 177543 chr8 145138636 + 133756867 133759047 SVA_D 2077 + 0 2064 10700 17 0 3 15 3 1 17 6 0 323 0 4 36 2 1 490 47 0 5 2 0 31 6 0 5 82 0 88 0 2 350 0 1 4 25 24 27 0 1 476 0 20 123 chain 2401 chr8 145138636 + 133757790 133757823 SVA_D 2077 + 958 991 35051 33 chain 5966 chr8 145138636 + 133757872 133757954 SVA_D 2077 + 1092 1175 35051 69 0 1 13 chain 2065 chr8 145138636 + 133758396 133758421 SVA_D 2077 + 1040 1065 54948 25 chain 239585 chr8 145138636 + 133795804 133798905 L1PA8A 6298 + 3165 6291 8483 201 1 0 38 0 1 180 1 9 16 1 12 188 22 19 48 1 2 178 0 1 342 0 1 6 0 2 6 6 4 280 1 2 61 4 5 135 7 6 58 6 5 518 0 3 395 0 2 266 23 24 112 chain 10735 chr8 145138636 + 133798969 133799112 THE1D 372 + 219 372 68977 19 2 8 114 0 4 8 chain 139501 chr8 145138636 + 133801683 133803264 L1PA5 6144 + 4557 6143 13138 736 0 5 513 0 3 318 4 1 10 chain 312324 chr8 145138636 + 133865908 133869486 L1PA5 6144 + 2537 6132 6570 627 1 0 12 2 0 134 0 1 1033 0 4 99 0 3 633 0 1 178 0 1 31 2 0 22 8 9 395 4 5 210 0 10 187 chain 25246 chr8 145138636 + 133880148 133880453 AluYk4 311 + 0 300 48878 118 5 0 182 chain 5117 chr8 145138636 + 133922218 133922322 MER45B 1037 + 724 837 85069 46 29 38 29 chain 36701 chr8 145138636 + 133934243 133934725 LTR10F 562 + 0 562 36954 147 7 57 13 2 33 248 3 2 62 chain 33405 chr8 145138636 + 133936763 133937213 MER4A1 472 + 2 472 39170 13 0 2 89 16 13 107 5 26 220 chain 3497 chr8 145138636 + 133943704 133943763 MLT2B2 565 + 508 563 95271 6 2 0 10 3 0 25 0 1 13 chain 5832 chr8 145138636 + 133944109 133944259 L1PB1 5432 + 5270 5422 81776 11 1 0 15 1 0 4 2 0 7 9 1 18 14 31 13 2 1 21 1 0 13 1 0 17 chain 20609 chr8 145138636 + 134024405 134024857 THE1D 372 + 0 372 55623 48 29 0 28 20 1 76 25 40 12 57 5 14 9 15 101 1 0 32 chain 57134 chr8 145138636 + 134089128 134090691 L1PA3long 6157 + 4602 6152 27217 630 14 0 591 0 1 328 chain 18888 chr8 145138636 + 134105748 134106033 THE1B 368 + 87 368 57650 85 47 43 153 chain 23192 chr8 145138636 + 134107609 134107930 THE1B 368 + 0 356 52091 117 30 66 17 1 0 156 chain 3235 chr8 145138636 + 134213524 134213572 MADE1 96 + 45 94 97609 26 1 2 21 chain 52020 chr8 145138636 + 134218169 134218932 L1PB3 3668 + 73 838 28869 34 47 33 292 6 18 111 0 2 18 16 19 55 9 8 175 chain 119761 chr8 145138636 + 134260817 134262378 THE1B-int 1605 + 0 1597 15572 64 0 1 120 8 10 64 0 1 166 0 25 119 6 10 53 3 6 352 6 7 4 1 0 595 chain 22528 chr8 145138636 + 134272830 134273084 L1PA3long 6157 + 5888 6157 53073 129 0 15 125 chain 5652 chr8 145138636 + 134274197 134274418 MLT1C 463 + 72 294 82549 52 100 104 16 33 30 20 chain 79973 chr8 145138636 + 134288113 134289012 MER11D 897 + 0 897 21632 783 3 1 113 chain 10673 chr8 145138636 + 134299885 134300926 HSMAR2 1300 + 140 1299 69095 36 835 957 24 4 0 18 4 0 46 10 14 64 chain 25547 chr8 145138636 + 134333338 134333682 THE1A 353 + 0 353 48406 100 11 10 92 1 0 108 1 12 31 chain 25952 chr8 145138636 + 134353887 134354217 L1PA10 4194 + 829 1161 47787 56 0 1 152 4 5 118 chain 24329 chr8 145138636 + 134378092 134378477 MER50 708 + 0 392 50289 45 1 10 40 10 11 55 10 11 117 4 1 69 17 16 17 chain 5560 chr8 145138636 + 134390803 134390869 L1MA5A 2387 + 2230 2296 82990 66 chain 81047 chr8 145138636 + 134416712 134417584 L1HS 6032 + 5157 6030 21426 355 0 1 517 chain 14377 chr8 145138636 + 134448868 134449028 L1PA4 6152 + 5992 6151 63068 4 1 0 155 chain 26024 chr8 145138636 + 134617838 134618192 THE1A 353 + 7 353 47682 100 14 13 82 1 0 114 7 1 36 chain 17971 chr8 145138636 + 134666948 134667206 L1PA8 5853 + 5506 5760 58684 56 1 0 116 2 1 14 1 0 45 8 7 15 chain 428183 chr8 145138636 + 134667630 134672567 L1PA5 6144 + 0 6144 4774 199 1 3 371 0 1 26 2 0 74 0 5 606 0 1 1026 0 1 2397 8 1206 4 0 1 60 23 23 140 chain 471982 chr8 145138636 + 134674002 134679941 L1PA7 6471 + 31 6313 3813 298 11 181 11 0 2 147 0 1 4 5 4 34 0 113 160 7 0 272 0 40 197 0 3 534 0 12 217 1 0 262 0 14 36 0 2 66 17 1 764 0 4 93 1 0 234 1 2 259 20 12 7 0 1 10 0 1 181 0 2 340 1 3 109 0 4 162 0 7 95 0 2 48 1 0 53 10 6 356 1 2 222 1 0 245 0 2 269 1 0 176 chain 14821 chr8 145138636 + 134783326 134783545 MER1B 344 + 92 344 62496 41 7 34 87 16 22 68 chain 6551 chr8 145138636 + 134839898 134840018 L1PB1 5432 + 5308 5420 79154 19 8 5 14 2 0 24 1 0 21 1 0 12 2 1 16 chain 6059 chr8 145138636 + 134871925 134871999 LTR50 688 + 17 91 80871 74 chain 18146 chr8 145138636 + 134904890 134905333 L1MA4 2864 + 2379 2789 58511 118 3 2 22 0 3 66 18 32 8 14 0 13 2 1 16 15 14 19 107 74 22 chain 33083 chr8 145138636 + 134923552 134924014 MER4A1 472 + 0 472 39450 112 0 5 108 12 15 151 21 23 58 chain 42511 chr8 145138636 + 134961813 134962360 MLT2A2 560 + 0 560 33057 196 11 12 191 3 14 76 0 1 70 chain 31588 chr8 145138636 + 134965319 134965694 THE1C 375 + 0 375 40680 375 chain 4638 chr8 145138636 + 134995527 134995690 MLT1I 406 + 243 406 87605 23 96 96 44 chain 27762 chr8 145138636 + 135013896 135014255 THE1B 368 + 0 368 45237 169 1 0 29 0 2 106 5 13 49 chain 3243 chr8 145138636 + 135054253 135054288 LTR16C 481 + 215 250 97549 35 chain 556105 chr8 145138636 + 135259101 135265130 L1PA2 6032 + 2 6032 354 335 1 0 3431 0 2 2262 chain 554857 chr8 145138636 + 135335396 135341538 L1PA3long 6157 + 5 6157 421 1700 0 5 116 1 2 34 1 2 528 0 4 428 1 0 468 1 0 1412 0 1 1452 chain 18637 chr8 145138636 + 135355720 135356084 THE1B 368 + 0 368 57956 111 0 3 6 16 14 35 49 45 14 7 15 63 26 25 37 chain 5338 chr8 145138636 + 135358259 135358324 MLT1C 463 + 398 463 84011 65 chain 9681 chr8 145138636 + 135466959 135467101 L1MA3 4352 + 4183 4322 71097 77 1 0 4 0 1 17 2 1 5 1 0 29 1 0 5 chain 4083 chr8 145138636 + 135612904 135612963 MER33 330 + 215 272 90884 40 3 1 16 chain 17205 chr8 145138636 + 135737091 135737303 THE1C 375 + 15 227 59569 212 chain 37522 chr8 145138636 + 135783598 135784096 MER1A 529 + 28 523 36390 370 0 1 43 31 27 54 chain 9548 chr8 145138636 + 135791622 135791808 L1PA10 4194 + 317 488 71373 20 2 0 19 1 0 6 2 1 11 23 10 11 7 9 84 chain 25925 chr8 145138636 + 135804604 135804969 THE1D 372 + 0 372 47827 128 1 5 33 14 22 11 5 0 173 chain 6228 chr8 145138636 + 135812253 135812348 MSTA 426 + 253 369 80244 34 8 29 53 chain 563059 chr8 145138636 + 135875862 135881890 L1HS 6032 + 0 6032 128 255 2 1 108 0 1 2776 0 4 2887 chain 16183 chr8 145138636 + 135886289 135886464 L1PA3long 6157 + 3577 3752 60773 175 chain 14782 chr8 145138636 + 135887372 135887695 MSTA 426 + 9 374 62554 57 49 73 67 4 0 10 0 26 8 41 17 21 9 29 57 chain 84638 chr8 145138636 + 135954552 135955454 L1HS 6032 + 5130 6032 20696 902 chain 5416 chr8 145138636 + 136022514 136022691 MER20 218 + 38 204 83620 24 4 0 18 14 11 29 66 62 22 chain 79870 chr8 145138636 + 136034069 136034959 L1P1 4361 + 3418 4305 21649 265 1 0 38 1 0 430 1 0 154 chain 23942 chr8 145138636 + 136109092 136109375 AluSc5 308 + 12 295 50877 283 chain 21019 chr8 145138636 + 136153542 136153908 THE1B 368 + 6 368 55096 105 0 3 6 3 0 49 54 49 87 23 24 39 chain 20929 chr8 145138636 + 136167597 136167868 L1PA7 6471 + 6174 6461 55220 9 0 1 154 5 20 103 chain 61608 chr8 145138636 + 136169727 136170437 L1PA5 6144 + 5433 6143 25960 563 1 0 121 6 7 19 chain 19125 chr8 145138636 + 136205347 136205632 L1PA8 5853 + 5567 5847 57426 43 8 7 55 19 16 51 1 0 108 chain 28378 chr8 145138636 + 136226367 136226675 AluYg6 310 + 0 304 44304 126 4 0 178 chain 16001 chr8 145138636 + 136246397 136246745 L1PB1 5432 + 5108 5419 61022 9 5 0 17 1 0 11 4 3 8 2 0 3 2 0 8 2 0 53 32 30 30 1 0 16 14 1 30 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 15 chain 96421 chr8 145138636 + 136344486 136345551 L1PA3long 6157 + 5089 6157 18724 218 0 1 842 0 2 5 chain 12386 chr8 145138636 + 136380502 136380781 L1PB1 5432 + 5180 5430 66164 39 5 0 17 1 0 45 1 0 15 71 54 20 1 0 23 1 0 11 1 0 18 1 0 4 1 0 4 chain 11080 chr8 145138636 + 136430032 136430374 L1PB1 5432 + 5114 5430 68444 24 1 0 6 1 0 12 28 22 34 8 7 18 1 0 8 3 0 31 5 4 16 3 0 7 32 29 13 2 0 21 38 35 25 1 0 4 chain 27749 chr8 145138636 + 136433524 136433905 L1MA2 4263 + 3681 4057 45251 75 4 3 47 3 0 63 0 1 88 1 0 8 10 9 82 chain 22192 chr8 145138636 + 136447089 136447444 THE1B 368 + 0 368 53574 44 0 15 22 29 30 58 1 0 23 4 0 94 0 2 13 0 1 4 8 6 44 1 2 10 chain 27427 chr8 145138636 + 136506434 136506788 THE1A 353 + 0 353 45662 107 17 16 230 chain 10836 chr8 145138636 + 136522925 136523053 HERVL-int 5654 + 1959 2087 68802 128 chain 59366 chr8 145138636 + 136535742 136536502 MER4E1 777 + 0 771 26546 319 5 9 215 1 8 220 chain 22897 chr8 145138636 + 136562056 136562325 L1PA5 6144 + 5870 6141 52517 116 5 7 148 chain 41479 chr8 145138636 + 136649785 136650313 L1PA6 6164 + 5637 6162 33686 243 0 3 120 22 22 129 6 0 8 chain 19470 chr8 145138636 + 136655718 136655924 L1PA2 6032 + 5826 6032 57071 206 chain 4180 chr8 145138636 + 136662751 136662880 L1MC1 2226 + 2074 2185 90259 9 4 0 16 7 5 18 1 0 6 35 24 33 chain 26749 chr8 145138636 + 136690821 136691176 THE1B 368 + 0 368 46614 44 6 21 107 1 0 121 1 0 75 chain 16439 chr8 145138636 + 136694354 136694630 THE1B-int 1605 + 0 227 60462 12 9 10 99 50 0 106 chain 45635 chr8 145138636 + 136749068 136749562 L1PA2 6032 + 4591 5085 31245 494 chain 5692 chr8 145138636 + 136786427 136786504 L1MA5A 2387 + 2230 2306 82383 66 1 0 10 chain 15180 chr8 145138636 + 136807909 136808073 L1PA3long 6157 + 5993 6157 62063 164 chain 11055 chr8 145138636 + 136833014 136833141 L1PA6 6164 + 6029 6156 68479 127 chain 134438 chr8 145138636 + 136844086 136846143 L1PB1 5432 + 3369 5427 13603 18 1 2 71 0 1 78 0 3 174 16 19 248 2 3 380 15 22 161 1 0 77 3 0 18 9 7 52 0 2 69 57 70 40 2 6 102 7 5 106 4 3 6 0 7 19 1 0 8 1 0 12 5 1 9 2 0 43 11 10 10 10 9 37 5 4 14 1 0 7 2 0 9 8 0 10 30 25 24 1 0 17 7 6 11 1 0 13 1 0 6 1 0 4 chain 59124 chr8 145138636 + 136890900 136891551 L1PA3long 6157 + 4232 4883 26626 651 chain 4667 chr8 145138636 + 136984380 136984458 MLT2D 439 + 14 92 87449 24 6 7 43 1 0 4 chain 23860 chr8 145138636 + 137023588 137023850 L1PA2 6032 + 5770 6032 51010 262 chain 9401 chr8 145138636 + 137105351 137105458 U6 107 + 0 107 71699 107 chain 4781 chr8 145138636 + 137177279 137177331 L1MCb 1641 + 805 857 86786 52 chain 44530 chr8 145138636 + 137217600 137218290 PABL_B 668 + 0 616 31813 277 45 16 174 4 12 28 53 0 22 1 0 32 1 2 53 chain 227632 chr8 145138636 + 137242314 137245169 L1HS 6032 + 1811 4500 8821 267 0 2 184 0 4 811 1 0 575 170 0 529 1 0 317 chain 11849 chr8 145138636 + 137244157 137244284 L1HS 6032 + 5905 6032 67113 127 chain 4012 chr8 145138636 + 137251904 137252064 L1PB1 5432 + 5259 5399 91363 22 1 0 15 1 0 4 87 70 21 1 0 8 chain 31111 chr8 145138636 + 137280126 137280572 MER4A1 472 + 0 472 41050 210 1 2 10 15 0 8 8 45 59 0 2 111 1 2 23 chain 28828 chr8 145138636 + 137281319 137281697 MER48 407 + 4 407 43584 26 0 1 4 1 0 16 0 1 35 1 0 46 5 25 56 0 5 188 chain 185277 chr8 145138636 + 137282137 137285415 HERVH48-int 3304 + 187 3235 10325 13 2 0 26 2 0 31 14 1 20 26 19 65 6 2 8 1 0 68 1 0 14 6 0 10 11 5 83 1 0 7 3 1 38 12 0 13 0 3 12 70 42 55 12 10 43 1 0 30 1 0 42 42 45 115 6 3 10 1 0 21 1 0 13 2 0 33 8 3 11 10 8 7 1 0 16 1 0 22 2 0 24 1 0 16 2 0 5 16 9 123 1 0 10 1 0 10 4 3 172 0 1 42 10 9 80 2 1 125 0 1 4 1 0 149 0 1 6 8 7 97 0 1 143 1 0 18 3 1 69 2 1 11 1 0 45 5 4 227 1 0 4 1 0 18 1 0 44 1 0 4 2 1 10 2 1 29 1 0 4 5 4 10 45 27 9 1 0 9 92 72 25 23 14 26 13 5 9 1 0 23 2 0 5 1 0 45 1 0 3 2 0 68 62 47 69 2 0 11 75 53 16 chain 28926 chr8 145138636 + 137287437 137287809 MER48 407 + 16 407 43441 14 0 1 4 1 0 51 1 0 45 0 20 256 chain 4008 chr8 145138636 + 137416563 137416607 LTR19B 566 + 522 566 91394 44 chain 4507 chr8 145138636 + 137542981 137543070 MADE1 96 - 0 96 88285 24 23 30 42 chain 22470 chr8 145138636 + 137590889 137591155 L1PA5 6144 + 5868 6135 53161 202 5 6 59 chain 30922 chr8 145138636 + 137683307 137683646 L1PA3long 6157 + 5818 6157 41198 339 chain 36043 chr8 145138636 + 137710205 137710699 MER75 514 + 0 514 37389 105 24 25 186 0 1 7 0 18 172 chain 32671 chr8 145138636 + 137713605 137714056 MLT2A1 477 + 0 477 39786 140 0 1 29 4 1 10 0 1 22 0 1 77 0 1 98 12 3 19 3 37 37 chain 64370 chr8 145138636 + 137740699 137741555 LTR12D 1347 + 405 1334 25335 131 0 31 42 4 8 53 0 42 96 11 12 119 0 1 76 11 7 26 1 0 33 1 0 252 chain 3092 chr8 145138636 + 137767024 137767056 THE1D-int 1627 - 777 809 98858 32 chain 28140 chr8 145138636 + 137796499 137796794 AluYg6 310 + 1 296 44654 295 chain 258076 chr8 145138636 + 137815039 137817915 L1PA4 6152 + 2470 5351 8019 233 0 5 2643 chain 106936 chr8 145138636 + 137867123 137868496 THE1B-int 1605 + 213 1605 17443 213 0 25 523 0 1 198 1 0 267 4 5 40 7 0 120 chain 26636 chr8 145138636 + 137888596 137888951 THE1A 353 + 0 353 46779 110 1 0 62 1 0 5 0 1 24 1 0 151 chain 4062 chr8 145138636 + 137906394 137906535 L1MA4 2864 + 2677 2791 91002 15 54 32 14 4 0 3 2 0 25 1 0 15 0 2 8 chain 43505 chr8 145138636 + 137908462 137908973 MER9a2 513 + 0 513 32454 13 0 1 42 1 5 395 3 0 57 chain 24770 chr8 145138636 + 137970955 137971240 L1PA7 6471 + 6182 6467 49633 285 chain 23881 chr8 145138636 + 137980009 137980307 AluSc5 308 + 0 299 50975 106 4 5 188 chain 56342 chr8 145138636 + 137989056 137989768 LTR30 714 + 0 714 27475 115 0 1 494 12 14 71 1 0 19 chain 29187 chr8 145138636 + 137990388 137990909 HERV30-int 1034 + 137 562 43071 10 24 0 13 9 3 40 1 0 39 5 6 13 33 0 51 5 0 41 13 1 75 2 1 91 20 5 36 chain 127349 chr8 145138636 + 138021044 138022614 THE1A-int 1579 + 0 1570 14380 84 0 1 331 10 9 193 1 0 83 0 1 229 1 0 4 1 2 633 chain 53102 chr8 145138636 + 138036989 138037559 L1PA2 6032 + 5370 5940 28541 570 chain 80353 chr8 145138636 + 138054201 138055105 L1PA4 6152 + 5068 5977 21560 306 1 3 314 0 2 124 0 1 159 chain 49448 chr8 145138636 + 138082432 138082991 LTR6B 557 + 0 557 29787 50 1 0 358 1 0 149 chain 128510 chr8 145138636 + 138083953 138085695 LTR12C 1709 + 0 1709 14218 611 4 0 108 0 118 74 48 0 58 0 41 102 1 0 4 4 2 106 0 4 162 13 2 216 0 1 15 131 0 85 chain 3644 chr8 145138636 + 138084750 138084794 LTR12C 1709 + 1071 1116 52706 1 0 2 38 1 0 4 chain 544101 chr8 145138636 + 138116165 138122187 L1PA2 6032 + 2 6027 1076 254 1 0 108 0 1 4803 0 1 119 1 2 584 0 1 152 chain 22439 chr8 145138636 + 138148882 138149128 L1PA5 6144 + 5886 6132 53218 246 chain 524875 chr8 145138636 + 138153321 138159754 L1PA5 6144 + 0 6132 2056 120 0 14 837 0 1 197 9 0 264 1 0 1543 0 1 199 1 0 326 0 1 947 1 0 447 1 0 37 2 1 197 0 10 529 312 0 346 2 0 115 chain 34592 chr8 145138636 + 138164445 138164884 MER4A1 472 + 0 461 38292 15 0 2 8 1 0 205 4 25 206 chain 53547 chr8 145138636 + 138239558 138240158 L1PA5 6144 + 5543 6144 28379 446 0 1 154 chain 117683 chr8 145138636 + 138245678 138247249 THE1C-int 1605 + 0 1589 15944 14 2 1 254 0 1 70 3 9 92 11 18 226 7 6 195 4 6 243 15 19 16 1 0 20 11 12 387 chain 2748 chr8 145138636 + 138292075 138292334 L1M3 994 + 69 319 101980 6 1 0 25 203 195 24 chain 57430 chr8 145138636 + 138302896 138303600 L1PA8 5853 + 5155 5853 27122 409 1 0 44 2 0 71 1 0 14 3 2 45 2 1 112 chain 27658 chr8 145138636 + 138316224 138316522 AluYd8 298 + 0 298 45385 298 chain 346189 chr8 145138636 + 138335422 138339259 L1PA4 6152 + 2302 6141 5964 198 0 1 3500 0 1 139 chain 19233 chr8 145138636 + 138345892 138346148 L1PA11 4918 + 4255 4507 57313 76 1 0 64 1 0 7 2 0 28 0 3 42 2 0 12 2 1 19 chain 87160 chr8 145138636 + 138373182 138374242 MER11C 1089 + 0 1063 20199 250 0 1 66 0 4 272 7 3 94 0 4 35 1 0 8 0 1 151 4 2 172 chain 151266 chr8 145138636 + 138406241 138407909 L1PA3long 6157 + 3476 5147 12269 681 0 3 987 chain 5423 chr8 145138636 + 138431480 138431548 MER58A 224 + 50 118 83597 68 chain 21007 chr8 145138636 + 138437276 138437601 THE1C 375 + 14 336 55107 30 9 9 133 13 14 28 13 9 99 chain 359735 chr8 145138636 + 138443773 138447818 L1PA5 6144 + 2101 6144 5805 267 0 1 807 1 0 2107 0 1 526 1 2 181 10 6 145 chain 5023 chr8 145138636 + 138556244 138556300 THE1D 372 + 316 372 85552 56 chain 39458 chr8 145138636 + 138571395 138571934 MLT2A2 560 + 0 549 35036 180 1 0 10 19 18 47 0 1 123 1 2 4 1 0 22 0 11 131 chain 51904 chr8 145138636 + 138583009 138583626 L1PA6 6164 + 5539 6156 28909 465 1 8 6 7 0 138 chain 40597 chr8 145138636 + 138592882 138593382 L1PA8 5853 + 5359 5852 34227 205 1 0 44 2 0 71 1 0 14 1 0 47 2 1 22 1 0 89 chain 532646 chr8 145138636 + 138703662 138709792 L1PA5 6144 + 2 6139 1724 77 0 1 37 3 17 832 0 2 201 9 0 264 1 0 309 0 1 604 5 0 912 0 1 479 0 1 206 0 1 1347 1 0 19 0 1 491 0 1 333 chain 51643 chr8 145138636 + 138734542 138735182 L1PA8 5853 + 5211 5853 28986 267 8 17 69 2 1 43 2 0 70 2 1 11 1 0 54 1 0 16 1 0 93 chain 45580 chr8 145138636 + 138831840 138832377 MER41A 554 + 0 537 31273 537 chain 38380 chr8 145138636 + 138889276 138889705 L1PA3long 6157 + 5710 6141 35793 375 0 2 54 chain 10621 chr8 145138636 + 138954961 138955118 MER4B 649 + 491 640 69184 6 7 0 65 1 0 17 0 1 53 1 0 7 chain 3954 chr8 145138636 + 138955612 138955764 LTR33A 529 + 17 187 91739 16 89 107 47 chain 42042 chr8 145138636 + 138961478 138962075 MER4A1_ 611 + 0 611 33335 43 0 1 80 2 4 82 3 0 47 17 0 15 0 23 82 1 6 77 0 2 134 1 2 13 chain 194237 chr8 145138636 + 139085580 139087706 L1PA3long 6157 + 4023 6157 9915 1874 0 8 252 chain 34149 chr8 145138636 + 139177674 139178174 MER51C 639 + 121 619 38600 56 1 0 28 11 10 19 2 0 129 18 0 22 0 4 135 0 9 10 7 15 39 1 0 22 chain 23461 chr8 145138636 + 139199347 139199707 THE1A 353 + 0 353 51646 64 57 49 96 1 2 142 chain 123986 chr8 145138636 + 139249462 139250988 THE1A-int 1579 + 0 1574 14854 145 2 0 14 2 0 109 0 3 145 2 1 259 4 2 462 0 56 34 4 0 147 1 2 48 1 0 147 chain 23954 chr8 145138636 + 139278849 139279179 L1PA8 5853 + 5524 5847 50860 40 1 0 44 2 0 71 1 0 14 10 9 38 2 1 19 1 0 87 chain 24172 chr8 145138636 + 139297757 139298090 L1PA8 5853 + 5508 5853 50538 14 0 1 41 1 0 46 2 0 64 1 16 50 2 1 19 1 0 76 0 1 16 chain 22700 chr8 145138636 + 139339483 139339727 L1PA2 6032 + 5788 6032 52828 244 chain 4901 chr8 145138636 + 139343028 139343363 MLT1B 390 + 9 374 86146 10 9 0 25 213 249 17 9 10 25 1 3 26 chain 28145 chr8 145138636 + 139358106 139358471 L1PA8 5853 + 5489 5847 44641 75 1 0 44 5 2 72 1 0 58 2 1 19 1 0 87 chain 23063 chr8 145138636 + 139373721 139374008 MER1A 529 + 242 529 52269 287 chain 15418 chr8 145138636 + 139420816 139421009 L1P5 443 + 243 437 61760 17 0 1 176 chain 5399 chr8 145138636 + 139427352 139427627 MER49 923 + 0 278 83705 29 196 199 50 chain 29270 chr8 145138636 + 139463026 139463336 AluYg6 310 + 0 310 42935 310 chain 5142 chr8 145138636 + 139510932 139510996 MLT2A2 560 + 30 94 84951 64 chain 3598 chr8 145138636 + 139668099 139668140 Tigger1 2417 + 2204 2245 94445 41 chain 41573 chr8 145138636 + 139686042 139686516 L1PA6 6164 + 4933 5407 33644 474 chain 6080 chr8 145138636 + 139799069 139799150 MSTA 426 + 4 84 80799 39 2 1 40 chain 19884 chr8 145138636 + 139910795 139911034 THE1B-int 1605 + 1361 1600 56558 239 chain 5955 chr8 145138636 + 139953574 139953927 L1ME1 1623 + 836 1161 81254 24 258 230 71 chain 119428 chr8 145138636 + 140000009 140001390 L1PA6 6164 + 4781 6156 15623 622 0 1 599 10 0 18 0 3 132 chain 3152 chr8 145138636 + 140146818 140146857 MIRb 242 + 76 115 98346 39 chain 65604 chr8 145138636 + 140160031 140160799 L1PA6 6164 + 5390 6159 25052 437 5 6 326 chain 39605 chr8 145138636 + 140204190 140204633 L1PA5 6144 + 5701 6144 34958 443 chain 115033 chr8 145138636 + 140292618 140293875 L1PA3long 6157 + 4899 6157 16388 439 0 1 818 chain 92374 chr8 145138636 + 140315252 140316426 MER4-int 2692 + 378 1591 19290 17 0 1 211 0 4 47 0 1 55 13 12 58 2 16 19 1 11 372 0 1 7 0 3 167 0 2 67 0 4 138 chain 11393 chr8 145138636 + 140328438 140328706 L1PB1 5432 + 5159 5420 67927 10 3 1 21 0 1 28 2 1 15 1 0 44 1 0 16 3 0 6 60 63 5 1 0 21 1 0 13 1 0 16 chain 6293 chr8 145138636 + 140351640 140351718 MER2 342 + 217 295 80024 78 chain 29749 chr8 145138636 + 140378212 140378629 MLT2A1 477 + 8 477 42308 123 9 29 11 5 1 7 0 1 14 0 1 190 3 37 55 chain 541116 chr8 145138636 + 140382163 140388384 L1PA5 6144 + 3 6144 1272 348 21 0 80 10 11 273 4 0 1218 0 2 183 0 1 273 8 0 777 0 2 72 0 1 869 0 2 894 61 4 494 0 1 259 0 1 222 5 0 139 0 4 11 chain 24040 chr8 145138636 + 140397877 140398250 THE1B 368 + 0 368 50746 13 2 0 34 0 1 16 1 3 41 15 16 45 30 24 101 1 0 74 chain 116737 chr8 145138636 + 140398293 140399833 THE1B-int 1605 + 45 1605 16097 153 31 8 25 7 6 195 0 25 8 0 2 103 0 1 4 1 0 38 0 13 115 4 5 143 6 5 458 0 1 65 9 10 158 0 2 17 chain 154606 chr8 145138636 + 140416422 140418221 L1PA7 6471 + 4659 6470 12079 9 0 4 750 0 6 130 0 4 52 0 3 24 11 5 57 0 1 766 chain 6486 chr8 145138636 + 140481619 140481691 L1PBa 3878 + 1279 1351 79391 72 chain 14433 chr8 145138636 + 140483977 140484194 L1PB 1623 + 1264 1453 62985 39 34 7 136 1 0 7 chain 43667 chr8 145138636 + 140484606 140485313 L1PB1 5432 + 4755 5427 32338 260 0 2 85 1 0 15 3 0 17 1 0 13 1 0 8 10 6 7 2 0 52 2 1 15 1 0 44 1 0 14 32 22 11 2 0 4 1 0 15 2 0 15 0 1 8 1 0 21 14 0 10 0 9 12 2 0 5 chain 3135 chr8 145138636 + 140582299 140582338 Tigger4a 237 - 102 141 98505 39 chain 100921 chr8 145138636 + 140684493 140686060 L1PA15 4387 + 2801 4326 18194 82 11 12 34 5 8 148 36 0 17 0 2 62 7 6 490 0 2 51 19 23 75 20 14 60 2 0 46 1 0 77 2 1 9 1 5 79 9 10 16 1 0 55 1 0 23 38 33 14 18 15 44 3 1 11 chain 38871 chr8 145138636 + 140774556 140775132 MER41B 635 + 25 615 35452 100 6 7 13 4 1 305 16 15 60 26 43 46 chain 38062 chr8 145138636 + 140900745 140901575 L1MA4 2864 + 1194 2005 36023 14 32 28 105 2 0 108 8 9 42 125 122 42 19 11 19 1 0 15 1 0 33 66 65 36 1 0 100 5 6 56 chain 65056 chr8 145138636 + 140905175 140905985 L1PA7 6471 + 2456 3275 25176 185 1 0 124 2 0 41 0 4 207 0 3 80 0 4 47 1 0 4 6 10 28 3 0 26 0 1 55 chain 11160 chr8 145138636 + 140948952 140949110 Tigger2 2703 + 2274 2449 68328 42 3 21 8 0 2 26 3 0 76 chain 2994 chr8 145138636 + 140950712 140950749 Tigger2b_Pri 1066 + 964 1002 99896 15 0 1 22 chain 124078 chr8 145138636 + 140977864 140979257 L1PA4 6152 + 4749 6138 14835 85 4 0 467 1 0 390 0 2 205 1 0 240 chain 3162 chr8 145138636 + 140981059 140981094 MER50 708 + 562 597 98261 35 chain 10354 chr8 145138636 + 140994367 140994507 Tigger1 2417 + 78 219 69696 22 7 8 111 chain 4489 chr8 145138636 + 140997950 140998039 Tigger1 2417 + 2242 2346 88400 9 2 0 11 5 8 10 1 11 40 0 4 11 chain 117707 chr8 145138636 + 141076505 141078018 LTR12C 1709 + 0 1709 15938 338 0 43 16 2 3 14 5 6 42 1 0 5 3 6 226 0 159 253 1 0 5 4 2 98 19 12 25 1 0 370 1 0 18 0 2 66 chain 27892 chr8 145138636 + 141091123 141091417 AluYa5 310 + 10 304 45047 294 chain 5373 chr8 145138636 + 141105276 141105341 MER39B 650 + 0 65 83834 65 chain 7684 chr8 145138636 + 141250289 141250390 MER47A 366 + 115 214 75665 58 2 0 41 chain 149066 chr8 145138636 + 141260608 141262256 L1PA4 6152 + 3371 5029 12414 625 0 3 679 0 7 344 chain 3953 chr8 145138636 + 141407516 141407562 MER30 238 + 34 80 91745 46 chain 21582 chr8 145138636 + 141484734 141485031 AluSc 308 + 8 288 54384 110 9 0 128 0 5 7 14 1 29 chain 3340 chr8 145138636 + 141498680 141498718 MADE1 96 + 2 40 96684 38 chain 4126 chr8 145138636 + 141901773 141901825 MLT2A2 560 + 498 553 90614 6 0 3 46 chain 64722 chr8 145138636 + 142067487 142068295 L1PA8 5853 + 5050 5853 25255 41 1 0 435 7 9 25 1 0 50 2 0 68 2 1 9 1 0 52 2 1 9 1 2 8 1 0 93 chain 33559 chr8 145138636 + 142075271 142075637 L1PA3long 6157 + 5776 6142 39039 366 chain 8076 chr8 145138636 + 142088529 142088629 MER85 139 + 6 109 74682 95 0 3 5 chain 124976 chr8 145138636 + 142647729 142650405 THE1B-int 1605 + 0 1605 14708 67 0 1 190 0 1 171 1 26 217 0 1 221 1099 0 710 chain 54256 chr8 145138636 + 142648607 142649282 THE1B-int 1605 + 909 1596 28134 58 0 1 74 6 4 292 4 15 132 0 2 109 chain 3254 chr8 145138636 + 142671285 142671520 MLT1D 503 + 254 484 97443 36 173 171 18 3 0 5 chain 39463 chr8 145138636 + 142725726 142726208 MER9a3 513 + 0 513 35031 13 0 1 10 0 23 247 0 1 12 0 4 141 1 3 58 chain 38369 chr8 145138636 + 142765643 142766460 LTR15 485 + 0 485 35798 29 333 0 178 0 1 250 0 1 21 1 0 5 chain 33333 chr8 145138636 + 142792019 142792389 L1PA4 6152 + 5781 6152 39230 82 0 1 288 chain 73260 chr8 145138636 + 142828842 142829804 LTR5_Hs 974 + 0 974 23271 191 0 3 265 0 4 196 0 1 9 11 12 55 0 3 5 3 0 32 7 7 34 11 14 143 chain 5256 chr8 145138636 + 142831028 142831191 MER4D1 891 + 77 216 84414 25 72 46 39 7 9 20 chain 3329 chr8 145138636 + 142831280 142831315 MER49 923 + 679 714 96774 35 chain 24765 chr8 145138636 + 142841988 142842330 THE1C 375 + 5 363 49640 137 7 11 31 0 9 20 7 10 140 chain 513079 chr8 145138636 + 142849964 142856074 L1PA6 6164 + 0 6154 2617 63 1 2 306 35 42 87 11 10 280 0 17 156 1 0 355 0 1 4 1 0 142 0 4 259 1 0 562 8 12 23 0 1 870 0 1 67 0 4 26 1 7 402 1 0 5 3 0 950 0 1 230 2 5 402 0 4 15 1 0 695 2 0 5 6 7 132 chain 304137 chr8 145138636 + 142880162 142883508 L1PA3long 6157 + 2804 6157 6739 131 0 1 177 0 1 832 0 1 1297 0 1 579 1 0 278 0 4 51 chain 21570 chr8 145138636 + 142885823 142886234 MSTB 430 + 0 415 54409 83 2 3 33 30 35 21 0 1 21 46 52 95 6 7 32 10 0 32 chain 134733 chr8 145138636 + 142959297 142960879 LTR12C 1709 + 0 1708 13563 210 4 6 46 0 1 473 0 119 256 1 0 6 2 0 107 0 4 327 2 1 122 0 4 26 chain 104581 chr8 145138636 + 142963045 142965622 MER41-int 2638 + 1151 2634 17747 26 1 0 41 0 1 62 20 19 15 0 1 91 22 23 103 7 1 58 3 2 197 5 4 115 2 0 263 1088 0 53 3 5 210 30 31 162 chain 41067 chr8 145138636 + 142965633 142966487 MER41A 554 + 0 554 33922 343 1 0 54 8 12 18 309 6 121 chain 86880 chr8 145138636 + 143000772 143001759 LTR5B 1012 + 0 1012 20251 100 0 2 615 0 18 20 0 1 183 0 4 69 chain 81713 chr8 145138636 + 143059853 143060811 LTR13_ 950 + 0 950 21295 167 0 1 177 0 1 261 14 4 339 chain 21430 chr8 145138636 + 143098070 143098318 AluY 311 + 57 306 54603 75 0 1 173 chain 14365 chr8 145138636 + 143105972 143106158 L1PA8A 6298 + 6079 6268 63090 14 6 9 166 chain 45594 chr8 145138636 + 143143861 143144454 LTR71B 605 + 0 605 31265 112 22 35 263 5 4 191 chain 88355 chr8 145138636 + 143195431 143196486 HERVL-int 5654 + 4564 5654 19976 39 4 25 20 0 5 104 0 6 852 0 3 36 chain 8463 chr8 145138636 + 143196597 143196754 MLT2A2 560 + 227 498 73766 66 11 120 29 18 23 33 chain 3884 chr8 145138636 + 143284505 143284546 Tigger4a 237 + 191 232 92267 41 chain 78418 chr8 145138636 + 143314683 143315676 LTR13 1007 + 0 1006 21998 11 14 15 45 3 6 149 0 5 150 4 5 298 1 15 268 21 10 29 chain 6161 chr8 145138636 + 143454000 143454072 Tigger7 736 + 37 109 80483 72 chain 14766 chr8 145138636 + 143542109 143542322 7SK 245 + 0 245 62577 131 1 2 23 22 53 36 chain 34073 chr8 145138636 + 143545686 143546127 LTR10F 562 + 0 562 38654 76 0 5 35 0 115 99 0 1 231 chain 37397 chr8 145138636 + 143547574 143548339 LTR2C 499 + 3 468 36476 188 302 1 235 8 9 32 chain 7816 chr8 145138636 + 143584890 143584982 MLT1D-int 1367 + 1163 1255 75327 92 chain 3689 chr8 145138636 + 143674803 143674843 L1MB3 1562 + 870 910 93683 40 chain 268862 chr8 145138636 + 143675467 143679501 Harlequin-int 5206 + 1675 5101 7737 167 1 2 15 1 2 18 0 1 170 0 2 310 0 1 978 0 1 132 9 6 332 318 10 143 0 2 208 311 0 324 0 4 32 0 8 7 10 1 47 81 81 162 8 9 93 0 1 157 chain 34834 chr8 145138636 + 143679941 143680387 LTR2 463 + 0 463 38133 188 0 15 159 12 13 59 1 2 27 chain 78541 chr8 145138636 + 143683114 143684040 LTR13A 966 + 12 966 21969 487 0 5 113 11 34 315 chain 23404 chr8 145138636 + 143758188 143758479 AluSp 311 + 6 298 51751 169 1 2 121 chain 75265 chr8 145138636 + 143831988 143832957 LTR5_Hs 974 + 0 974 22781 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 18 1 0 85 chain 81294 chr8 145138636 + 143843858 143844823 LTR13 1007 + 38 1006 21369 35 2 0 14 5 6 287 5 6 429 0 1 109 0 2 79 chain 24056 chr8 145138636 + 143960007 143960283 AluSp 311 + 7 283 50718 276 chain 62244 chr8 145138636 + 144037107 144037833 SVA_D 2077 + 1049 2075 25807 56 0 4 7 0 299 292 1 2 20 0 10 325 14 0 11 chain 22949 chr8 145138636 + 144061157 144062206 MER41A 554 + 0 554 52449 154 726 224 23 0 1 25 0 1 40 3 8 78 chain 36443 chr8 145138636 + 144093077 144093953 LTR10E 629 + 1 628 37110 15 1 0 95 276 6 12 0 3 26 19 16 60 37 63 73 7 6 184 29 27 35 1 0 6 chain 84405 chr8 145138636 + 144145714 144146714 LTR5A 1029 + 0 1029 20732 134 0 13 428 4 8 182 9 11 10 0 6 54 0 4 179 chain 5227 chr8 145138636 + 144213797 144213861 MER53 195 + 131 195 84556 64 chain 83731 chr8 145138636 + 144365341 144366303 LTR13A 966 + 0 966 20866 499 0 5 267 1 0 195 chain 3422 chr8 145138636 + 144387046 144387085 MER58A 224 + 51 90 95892 39 chain 82356 chr8 145138636 + 144567058 144568062 LTR13 1007 + 0 1007 21165 68 2 0 313 7 8 4 1 0 4 0 1 285 0 2 130 0 1 138 0 2 19 2 1 31 chain 243413 chr8 145138636 + 144570701 144573610 L1PA6 6164 + 3221 6159 8392 482 1 0 74 4 6 116 7 0 5 0 2 111 8 5 343 0 8 124 0 2 102 0 4 713 0 4 91 0 3 108 2 21 95 10 10 38 2 1 80 4 0 62 0 1 327 chain 26203 chr8 145138636 + 144640252 144640622 THE1B 368 + 0 368 47414 13 2 0 23 1 6 130 2 1 24 1 0 91 2 0 13 0 1 4 8 6 56 chain 149644 chr8 145138636 + 144648742 144652123 L1PA14 3548 + 1163 3456 12376 207 1 2 37 2 1 64 4 6 104 606 0 104 293 0 288 10 6 79 1 0 4 0 1 152 10 11 82 1 2 16 1 2 28 4 9 167 2 1 16 9 0 7 0 4 28 1 0 9 1 0 88 1 0 242 0 1 7 347 22 23 0 4 13 2 0 5 2 0 65 20 162 100 18 13 34 4 2 10 23 26 39 chain 6030 chr8 145138636 + 144654625 144655405 MER52C 1267 + 348 997 80963 45 680 550 35 1 0 19 chain 2228 chr8 145138636 + 144655478 144655501 MER52C 1267 + 881 904 105174 23 chain 127240 chr8 145138636 + 144664865 144666422 THE1A-int 1579 + 0 1579 14394 12 0 3 149 0 2 26 0 3 68 2 0 727 0 13 186 0 2 69 0 1 318 chain 25353 chr8 145138636 + 144737546 144737862 AluY 311 + 0 307 48700 41 4 0 84 4 5 110 6 0 67 chain 77057 chr8 145138636 + 144759761 144760815 MER11C 1089 + 0 1073 22303 246 0 9 58 0 4 69 1 0 12 0 2 132 84 83 54 0 1 18 0 4 7 1 0 38 0 1 126 1 2 54 1 0 144 0 1 8 chain 44098 chr8 145138636 + 144778901 144779595 LTR14B 630 + 22 630 32085 149 83 0 57 0 1 65 0 25 72 0 9 24 44 6 200 chain 3993 chr8 145138636 + 144779052 144779097 LTR14B 630 + 174 219 91502 45 chain 76972 chr8 145138636 + 144795893 144796861 LTR5_Hs 974 + 0 974 22325 285 0 1 181 0 1 188 1 0 163 8 15 19 20 18 103 chain 31809 chr8 145138636 + 144813364 144814784 L1MA4 2864 + 1160 1980 40489 29 33 38 114 2 0 6 0 1 5 43 42 42 0 5 24 820 205 46 19 12 143 1 4 20 1 12 72 chain 25766 chr8 145138636 + 144815998 144816299 AluSp 311 + 0 304 48074 91 0 3 210 chain 4741 chr8 145138636 + 144868834 144869179 HERVL-int 5654 + 0 345 22353 345 chain 79661 chr8 145138636 + 144869549 144870548 LTR13 1007 + 0 1007 21703 73 2 0 8 0 2 13 1 2 283 8 9 304 0 5 116 0 1 102 0 2 55 3 1 31 chain 6418 chr8 145138636 + 144870583 144871050 HERVL-int 5654 + 2037 2509 22353 153 0 5 314 chain 45166 chr8 145138636 + 144871050 144871563 MER9a2 513 + 0 513 31489 513 chain 77217 chr8 145138636 + 144872897 144873813 HERVK9-int 4720 + 54 966 22260 4 1 0 66 1 0 8 1 0 26 6 5 794 1 0 4 0 1 4 chain 8452 chr8 145138636 + 144873813 144874428 HERVL-int 5654 + 5340 5654 22353 17 1 2 21 305 0 30 0 2 17 1 2 223 chain 21811 chr8 145138636 + 144874428 144874710 MLT2A1 477 + 0 288 54088 142 0 1 25 1 5 35 0 2 66 1 0 12 chain 120553 chr8 145138636 + 144874997 144876600 LTR12C 1709 + 0 1709 15438 24 0 9 245 17 18 42 18 61 65 8 7 366 1 0 193 0 88 90 51 20 7 1 0 384 7 6 84 chain 87709 chr8 145138636 + 144911600 144913073 THE1B-int 1605 + 0 1605 20094 14 0 12 52 0 1 184 5 0 151 311 0 16 0 25 20 7 8 300 9 415 377 0 2 22 0 1 5 chain 25614 chr8 145138636 + 144913085 144913439 THE1B 368 + 12 368 48293 42 8 12 103 7 6 22 1 0 171 chain 85829 chr8 145138636 + 144949446 144950446 LTR5B 1012 + 0 1012 20483 101 0 2 142 0 1 426 0 2 77 2 0 174 0 8 45 0 1 33 chain 22485 chr8 145138636 + 144951782 144952054 THE1D-int 1627 + 197 469 53140 272 chain 35019 chr8 145138636 + 144966806 144967253 LTR2 463 + 0 463 38005 55 0 3 69 0 3 24 3 8 41 0 1 211 0 4 44 chain 6217 chr8 145138636 + 145031275 145031653 HERVK14C-int 762 + 563 759 80290 5 2 0 50 4 3 13 119 45 8 1 0 10 1 0 21 121 18 23 chain 48411 chr8 145138636 + 145032160 145032719 LTR14C 587 + 0 587 30143 228 0 28 331 chain 65128 chr8 145138636 + 145033850 145034568 L1PA3long 6157 + 5430 6149 25158 393 0 1 325 chain 16522 chr8 145138636 + 145035874 145036143 LTR12F 595 + 0 409 60339 91 4 17 4 1 0 34 1 0 4 1 0 15 5 71 51 11 75 47 chain 16239 chr8 145138636 + 145037625 145037942 L1PB1 5432 + 5138 5427 60704 8 1 0 12 5 1 9 2 0 51 1 0 60 2 1 10 31 18 19 2 0 5 1 0 14 2 0 24 1 0 22 0 3 9 1 0 18 2 0 5 chain 3264 chr8 145138636 + 145041201 145041255 LOR1a 498 + 19 75 97335 18 5 7 31 chain 16585 chr8 145138636 + 145050615 145050896 LTR43 600 + 259 528 60278 17 8 0 113 5 7 10 37 31 91 chain 75813 chr8 145138636 + 145055125 145056118 LTR13 1007 + 0 1007 22633 73 2 0 237 0 3 68 4 5 78 1 3 63 0 4 117 0 2 41 1 5 116 6 7 153 2 1 31 chain 79023 chr8 145138636 + 145065799 145066800 LTR13 1007 + 0 1007 21866 73 2 0 307 5 6 242 2 1 62 0 8 113 0 1 162 2 1 31 chain 524715 chr9 138394717 + 139654 145461 L1PA3long 6157 + 4 5910 2064 148 10 11 613 0 128 122 1 0 58 27 0 2107 1 0 2465 1 0 254 chain 5835 chr9 138394717 + 165553 165645 MER20 218 + 30 126 81762 44 6 12 5 2 0 35 chain 21039 chr9 138394717 + 173905 174161 AluY 311 + 40 297 55070 86 0 1 170 chain 13579 chr9 138394717 + 221341 221529 MER2 342 + 35 221 64197 34 0 2 8 7 2 28 0 1 111 chain 28879 chr9 138394717 + 303193 303589 L1PA16 3655 + 3150 3538 43515 51 1 0 89 2 0 139 8 3 106 chain 14869 chr9 138394717 + 454270 454484 MER44A 345 + 85 323 62427 14 1 3 50 5 28 73 1 0 70 chain 22989 chr9 138394717 + 475512 475841 MER4E1 777 + 0 347 52379 23 1 0 7 0 2 93 6 10 20 6 13 143 1 3 13 0 4 16 chain 6855 chr9 138394717 + 558840 558922 U6 107 + 15 99 78124 64 0 2 18 chain 9896 chr9 138394717 + 604844 604962 THE1D 372 + 254 372 70623 118 chain 29775 chr9 138394717 + 728511 729091 MER4D1 891 + 334 884 42272 98 1 5 47 38 6 174 35 37 23 26 16 65 50 56 23 chain 49146 chr9 138394717 + 764722 765441 MER4E1 777 + 18 777 29886 135 0 3 43 3 7 65 0 2 60 0 19 43 0 1 37 0 1 20 0 1 5 1 0 42 13 19 15 39 30 130 0 13 68 chain 455198 chr9 138394717 + 767073 772861 L1PA8 5853 + 51 5853 4253 21 2 0 10 1 0 13 49 13 66 1 2 129 0 4 41 0 3 153 0 1 84 5 9 22 0 4 157 0 3 93 1 4 201 0 2 114 6 11 145 1 4 192 0 5 352 30 4 99 8 6 110 0 3 143 0 4 578 6 8 17 3 1 240 0 4 20 3 6 128 0 1 161 0 3 151 0 2 64 0 5 22 0 2 197 1 9 44 0 1 64 1 0 151 0 3 55 2 1 36 1 0 118 9 7 288 0 1 222 0 3 96 0 4 16 0 2 75 0 2 295 2 1 12 0 2 166 1 0 41 7 5 70 2 1 9 1 0 52 2 1 20 6 8 84 chain 1923 chr9 138394717 + 768933 768960 L1PA8 5853 + 1915 1942 101779 27 chain 72072 chr9 138394717 + 779736 780777 MER11C 1089 + 0 1063 23518 179 2 1 67 7 16 43 0 2 5 2 4 69 1 0 148 64 70 79 8 12 4 1 0 38 0 1 127 0 1 54 1 0 117 0 1 25 chain 9715 chr9 138394717 + 799881 800139 MER2 342 + 29 294 71017 50 58 56 74 49 58 27 chain 3626 chr9 138394717 + 912951 912991 MER58A 224 + 56 96 94211 40 chain 3003 chr9 138394717 + 922198 922234 MER5C 305 + 200 236 99810 36 chain 33300 chr9 138394717 + 1093543 1093977 Tigger2b_Pri 1066 + 574 1019 39259 161 8 19 229 0 1 4 1 0 31 chain 3913 chr9 138394717 + 1118763 1118810 MER91C 135 - 20 67 92031 47 chain 312434 chr9 138394717 + 1146464 1150348 L1PA5 6144 + 2553 6138 6565 617 1 0 16 309 0 69 0 1 110 0 1 307 0 3 672 0 4 1029 0 1 427 0 1 327 chain 84757 chr9 138394717 + 1209555 1210500 L1PA5 6144 + 4826 5771 20671 945 chain 555532 chr9 138394717 + 1223884 1229900 L1PA2 6032 + 3 6030 381 154 0 11 5312 0 1 399 1 0 150 chain 28625 chr9 138394717 + 1245429 1245754 L1PA5 6144 + 5803 6128 43908 325 chain 461227 chr9 138394717 + 1393703 1399507 L1PA8 5853 + 50 5853 4101 21 7 0 11 66 26 92 0 1 98 10 14 466 0 3 357 0 5 383 0 1 50 0 22 6 0 1 35 13 14 88 0 1 336 1 2 557 29 0 161 0 1 286 4 25 15 0 1 127 0 1 266 5 6 359 0 8 118 0 1 89 0 1 103 0 1 6 7 5 444 5 6 98 1 0 241 2 0 557 1 0 38 5 4 20 0 8 42 2 1 61 2 1 19 1 0 93 chain 50533 chr9 138394717 + 1410353 1410911 L1PA3long 6157 + 2859 3417 29371 558 chain 5897 chr9 138394717 + 1504534 1504603 L1MB5 1630 + 1396 1465 81496 69 chain 23063 chr9 138394717 + 1539679 1539965 LTR13A 966 + 0 288 52270 85 1 0 65 0 3 135 chain 459241 chr9 138394717 + 1558434 1563747 L1PA4 6152 + 3 5332 4150 577 1 0 489 2 1 10 0 3 161 1 0 611 0 1 924 0 4 361 0 1 532 5 6 450 0 1 170 1 0 46 0 4 942 0 5 30 chain 6512 chr9 138394717 + 1626773 1626973 L1MD2 1676 + 958 1155 79300 15 99 97 67 1 0 18 chain 65589 chr9 138394717 + 1628487 1629262 L1PA6 6164 + 5379 6154 25056 169 0 1 426 2 1 178 chain 3093 chr9 138394717 + 1629350 1629398 L1MC1 2226 + 2083 2128 98845 23 2 0 15 1 0 7 chain 32979 chr9 138394717 + 1666886 1667366 Charlie3 2679 + 2220 2674 39532 239 4 0 133 43 20 12 0 1 49 chain 3222 chr9 138394717 + 1689311 1689349 Zaphod 902 + 299 337 97718 38 chain 210375 chr9 138394717 + 1692241 1694555 L1PA3long 6157 + 3837 6157 9343 456 0 2 1009 0 4 849 chain 52933 chr9 138394717 + 1706584 1707288 MER4E 760 + 51 752 28598 119 14 11 51 1 0 137 15 17 45 2 1 320 chain 543245 chr9 138394717 + 1749540 1755665 L1PA3long 6157 + 5 6155 1121 977 1 0 1344 2 1 57 0 1 6 0 3 390 2 1 678 0 22 34 4 0 1786 0 3 174 0 3 413 1 0 115 3 4 138 chain 38128 chr9 138394717 + 1760935 1761354 L1PA2 6032 + 5613 6032 35967 419 chain 65793 chr9 138394717 + 1764553 1765340 L1PA7 6471 + 5680 6469 25005 22 0 1 587 0 2 28 0 1 138 2 0 10 chain 28420 chr9 138394717 + 1809271 1809573 AluYa5 310 + 0 301 44233 123 1 0 178 chain 348620 chr9 138394717 + 1860887 1865122 L1PA6 6164 + 1882 6159 5926 31 5 9 92 0 1 161 1 0 157 0 1 65 0 4 193 0 3 111 0 10 182 0 1 281 0 1 4 0 2 350 9 5 54 1 0 272 0 1 132 0 3 362 3 7 46 1 7 206 8 7 313 0 1 105 0 2 80 1 2 45 0 3 121 0 3 139 1 2 621 1 0 74 2 0 5 chain 3461 chr9 138394717 + 1906156 1906195 U5 65 + 5 44 95534 39 chain 38050 chr9 138394717 + 1922583 1923032 L1PA5 6144 + 5677 6132 36033 214 1 0 90 8 15 136 chain 4693 chr9 138394717 + 1971286 1971335 THE1B 368 + 258 307 87304 49 chain 109370 chr9 138394717 + 1971423 1972975 THE1B-int 1605 + 27 1600 17131 92 54 0 154 1 7 115 0 64 158 17 22 42 25 21 43 0 1 396 3 7 45 27 28 74 18 15 192 0 1 96 chain 4638 chr9 138394717 + 2006672 2006730 LTR33A_ 513 + 430 513 87608 27 0 25 31 chain 142092 chr9 138394717 + 2221396 2222983 L1PA4 6152 + 4551 6138 12926 1587 chain 27451 chr9 138394717 + 2252619 2252969 THE1B 368 + 0 368 45638 44 0 15 82 0 4 12 13 12 199 chain 28653 chr9 138394717 + 2275705 2276100 LTR7 482 + 0 477 43867 101 3 48 76 5 36 116 0 4 38 12 14 44 chain 291260 chr9 138394717 + 2276107 2279810 HERVH-int 3825 + 0 3825 7094 156 0 3 174 1 0 6 8 9 14 17 18 90 1 5 14 3 1 13 0 2 13 25 112 13 13 75 62 59 0 63 0 3 56 7 8 30 0 8 278 15 0 205 9 0 254 4 31 290 0 4 65 1 0 192 0 4 607 1 0 164 15 16 44 0 1 360 0 1 361 chain 29021 chr9 138394717 + 2281018 2281512 LTR7 482 + 0 470 43290 101 72 15 108 7 8 22 8 38 127 12 14 37 chain 9971 chr9 138394717 + 2311253 2311381 MER85 139 + 0 139 70482 44 0 1 50 0 10 34 chain 80383 chr9 138394717 + 2372365 2373416 L1PREC2 3366 + 1819 2866 21554 164 0 4 91 1 4 143 0 1 526 2 0 26 0 1 27 1 0 11 6 0 33 1 0 3 3 0 13 chain 40118 chr9 138394717 + 2392734 2393182 MER9a3 513 + 0 448 34583 58 0 1 4 1 0 385 chain 2803 chr9 138394717 + 2407015 2407061 MER52A 1651 + 898 935 101631 21 9 0 16 chain 230015 chr9 138394717 + 2444328 2446983 L1PA4 6152 + 2665 5326 8747 318 0 24 157 0 1 100 0 2 449 25 6 448 7 0 798 0 7 234 3 1 116 chain 32414 chr9 138394717 + 2449932 2450345 MLT2A1 477 + 0 406 40029 169 4 1 215 4 0 21 chain 3120 chr9 138394717 + 2450614 2450647 MER61A 341 + 308 341 98629 33 chain 30337 chr9 138394717 + 2580819 2581280 MLT2A1 477 + 0 477 41724 48 0 2 88 4 5 19 6 10 213 41 51 22 1 0 19 chain 388516 chr9 138394717 + 2583955 2589003 L1PB1 5432 + 84 5099 5340 205 3 1 381 0 1 90 0 1 632 1 0 7 2 0 5 25 11 406 0 1 175 13 14 92 5 6 41 0 1 45 0 1 47 2 0 5 10 11 231 14 0 203 0 1 144 18 14 44 5 9 817 13 6 536 0 4 357 4 0 470 chain 27047 chr9 138394717 + 2707425 2707779 L1PA8 5853 + 5497 5847 46203 22 0 3 42 1 0 47 2 0 68 2 1 8 1 0 52 2 1 19 1 0 87 chain 25438 chr9 138394717 + 2713840 2714205 L1PA8 5853 + 5493 5853 48570 71 1 0 44 2 0 72 1 0 4 11 5 6 0 7 38 2 1 19 1 0 93 chain 4311 chr9 138394717 + 2761308 2761361 LTR73 568 + 474 527 89437 53 chain 157967 chr9 138394717 + 2773425 2775506 L1PA10 4194 + 2089 4161 11882 133 0 4 236 1 0 167 0 1 18 0 1 1 13 0 83 1 0 379 0 2 17 13 11 44 0 1 128 1 6 4 0 1 93 1 0 108 8 13 18 11 1 87 0 2 298 0 2 134 5 4 29 4 1 34 1 0 11 chain 23961 chr9 138394717 + 2778044 2778466 L1PA15 4387 + 3916 4325 50852 16 1 0 67 4 5 100 1 0 26 1 0 39 17 16 23 14 9 39 17 14 44 3 1 10 chain 29972 chr9 138394717 + 2792052 2792439 MLT2A1 477 + 0 385 42083 169 4 1 9 0 1 18 1 2 101 2 1 83 chain 4199 chr9 138394717 + 2792572 2792624 MLT2A1 477 + 0 53 90135 5 0 1 47 chain 60765 chr9 138394717 + 2848946 2849668 L1PA5 6144 + 5411 6140 26161 194 0 3 381 0 7 10 7 0 79 0 4 51 chain 90256 chr9 138394717 + 2897297 2898316 L1PA3long 6157 + 5136 6157 19637 43 0 1 443 0 1 533 chain 148396 chr9 138394717 + 2925765 2927539 L1PA7 6471 + 4694 6468 12461 251 5 4 283 0 3 1002 0 4 123 3 1 96 4 0 7 chain 4265 chr9 138394717 + 2980889 2981397 LTR9B 643 + 6 519 89733 19 1 0 15 89 89 13 317 330 28 7 0 19 chain 177751 chr9 138394717 + 3051084 3053048 L1PA3long 6157 + 4174 6155 10690 1799 0 17 165 chain 18761 chr9 138394717 + 3057250 3057468 L1PA7 6471 + 6242 6460 57831 218 chain 24415 chr9 138394717 + 3095934 3096189 AluYa5 310 + 38 293 50144 255 chain 478814 chr9 138394717 + 3106937 3113299 L1PA5 6144 + 665 6130 3662 362 1 0 241 0 1 1315 0 3 429 0 1 153 1 0 880 903 0 1039 1 2 341 0 1 182 0 1 514 chain 40570 chr9 138394717 + 3158832 3159271 L1PA2 6032 + 5593 6032 34246 439 chain 457317 chr9 138394717 + 3312602 3317897 L1PA5 6144 + 0 5509 4200 91 0 217 861 9 0 387 0 1 756 3 1 45 0 1 531 0 1 266 1 0 1178 1 9 926 2 1 163 1 0 74 chain 78460 chr9 138394717 + 3339738 3340601 L1PA4 6152 + 4475 5338 21991 863 chain 44164 chr9 138394717 + 3352878 3353357 L1PA3long 6157 + 5678 6157 32044 479 chain 2988 chr9 138394717 + 3372262 3372440 LTR16C 481 + 243 429 99987 16 129 137 33 chain 92542 chr9 138394717 + 3376570 3377598 L1PA5 6144 + 5110 6144 19268 886 0 6 142 chain 7105 chr9 138394717 + 3398851 3398927 L1HS 6032 + 5956 6032 77246 76 chain 4819 chr9 138394717 + 3440506 3440836 L1ME1 1623 + 133 458 86604 30 1 0 30 246 242 23 chain 51539 chr9 138394717 + 3587766 3588338 L1PA4 6152 + 5573 6151 29027 430 0 6 142 chain 60890 chr9 138394717 + 3641171 3641938 L1PA8 5853 + 5099 5853 26138 201 0 1 263 1 0 17 7 0 27 2 0 71 1 0 9 1 0 52 2 1 19 1 0 93 chain 5539 chr9 138394717 + 3686432 3686496 MER96B 391 - 221 285 83088 64 chain 88225 chr9 138394717 + 3694466 3695450 L1PA4 6152 + 4755 5740 19998 215 0 1 769 chain 96895 chr9 138394717 + 3733630 3734981 LTR12C 1709 + 0 1709 18667 12 8 17 11 15 6 217 0 1 19 4 0 6 3 8 41 0 43 30 0 1 6 1 0 46 0 1 139 6 7 39 0 278 137 7 56 30 4 5 59 20 13 15 10 0 196 0 1 187 1 0 82 chain 20192 chr9 138394717 + 3749777 3750092 LTR7 482 + 128 482 56148 94 5 6 19 0 31 34 2 0 42 8 15 50 12 14 49 chain 122974 chr9 138394717 + 3788579 3790124 THE1B-int 1605 + 18 1592 15029 215 0 2 138 0 1 52 0 25 494 0 1 646 chain 8956 chr9 138394717 + 3803108 3803282 MER2 342 + 8 220 72658 43 48 81 6 0 5 77 chain 6481 chr9 138394717 + 3959758 3959839 MLT1B 390 + 68 149 79405 81 chain 21819 chr9 138394717 + 3983038 3983383 THE1B 368 + 9 359 54078 48 46 47 68 1 0 29 2 3 101 1 5 49 chain 44829 chr9 138394717 + 3983392 3984001 THE1B-int 1605 + 0 637 31682 12 22 24 393 2 27 23 3 4 154 chain 62831 chr9 138394717 + 4049858 4050604 L1PA6 6164 + 5415 6162 25672 306 0 1 440 chain 123893 chr9 138394717 + 4189899 4191283 L1PA3long 6157 + 858 2242 14866 306 1 2 550 1 0 526 chain 5954 chr9 138394717 + 4196191 4196262 LTR12C 1709 + 807 877 81262 30 1 0 40 chain 4029 chr9 138394717 + 4241368 4241461 L1MA4 2864 + 2724 2809 91246 14 22 16 11 3 1 43 chain 28519 chr9 138394717 + 4346671 4346971 AluYa5 310 + 1 301 44087 300 chain 10029 chr9 138394717 + 4372308 4372476 MER74B 573 + 0 163 70359 12 1 0 43 19 18 43 3 0 47 chain 125697 chr9 138394717 + 4405410 4407352 L1MA2 4263 + 1603 3323 14599 239 0 3 41 0 3 227 5 9 157 24 16 143 2 1 53 229 0 24 1 0 34 0 4 83 8 6 122 4 2 40 0 4 93 5 7 240 4 5 164 chain 418829 chr9 138394717 + 4448851 4454001 L1PA6 6164 + 1 6159 4896 63 1 2 401 1 0 382 1 2 71 3 2 1055 2 1 160 0 1 192 0 1 447 0 1 91 0 1 133 3 1 53 5 684 614 9 13 245 2 9 288 8 9 268 19 1 126 0 4 91 0 329 271 5 6 140 chain 498305 chr9 138394717 + 4466666 4472764 L1PA6 6164 + 0 6160 3191 282 65 0 7 6 71 149 2 1 172 12 13 25 1 0 4 6 7 208 0 25 547 3 7 524 1 0 289 8 10 663 0 1 177 2 3 4 0 1 80 0 3 88 1 29 302 0 1 7 1 0 251 2 3 365 1 0 1835 2 0 6 chain 3271 chr9 138394717 + 4512663 4512699 MADE1 96 - 60 96 97281 36 chain 454143 chr9 138394717 + 4531071 4536242 L1PA4 6152 + 1 5188 4284 1132 6 0 103 1 0 1458 0 5 472 1 0 114 1 0 348 0 5 548 0 1 132 1 0 488 0 15 366 chain 19091 chr9 138394717 + 4562919 4563131 L1PA2 6032 + 5820 6032 57452 212 chain 542356 chr9 138394717 + 4605799 4611803 L1PA3long 6157 + 0 6152 1189 152 0 1 174 0 13 145 0 1 295 0 128 26 0 4 2798 8 9 2406 chain 32548 chr9 138394717 + 4627807 4628360 L1MA3 4352 + 3777 4311 39912 84 9 11 7 2 0 20 13 23 167 54 30 61 2 1 78 2 0 23 8 6 23 chain 158445 chr9 138394717 + 4659324 4661138 L1PA5 6144 + 4280 6132 11845 190 8 6 334 1 0 432 1 0 205 0 1 548 0 41 95 chain 103246 chr9 138394717 + 4784014 4785907 L1M1 2793 + 1169 2695 17926 13 1 0 87 4 0 6 13 10 212 1 4 56 16 16 120 8 6 58 1 2 28 0 1 36 5 6 71 0 3 34 1 6 149 0 2 8 1 8 10 0 2 235 0 2 73 4 0 7 0 2 35 377 0 41 1 0 26 3 2 82 1 0 45 2 1 11 1 0 10 chain 26130 chr9 138394717 + 4785309 4785657 L1PA8 5853 + 5508 5849 47520 56 1 0 44 2 0 71 1 0 9 2 1 51 2 1 19 1 0 89 chain 30497 chr9 138394717 + 4790350 4791001 L1MA2 4263 + 3705 4218 41569 101 3 0 150 11 9 93 7 0 47 202 80 5 2 0 13 1 0 3 1 0 12 chain 3047 chr9 138394717 + 4838779 4838811 Charlie4z 170 + 104 136 99361 32 chain 53988 chr9 138394717 + 4886928 4887563 PABL_A 660 + 0 659 28232 24 0 15 45 0 9 566 chain 527601 chr9 138394717 + 5031771 5037857 L1PA4 6152 + 0 6142 1930 100 2 0 199 26 37 297 0 2 887 1 7 1155 0 3 356 1 3 137 1 0 67 0 4 57 0 1 590 0 3 501 0 5 396 0 15 476 1 5 73 1 3 583 1 2 178 chain 13100 chr9 138394717 + 5039304 5039474 MER2 342 + 92 266 64927 22 0 2 86 0 2 62 chain 505210 chr9 138394717 + 5100912 5107035 L1PA6 6164 + 0 6159 2958 63 1 2 400 1 0 88 0 3 109 0 3 449 0 13 332 9 8 258 1 0 133 1 0 464 25 0 417 0 4 434 5 10 317 0 4 192 1 3 686 0 3 64 8 0 346 0 2 368 0 3 110 0 9 21 0 4 75 0 1 163 3 0 220 0 1 217 1 19 141 chain 90410 chr9 138394717 + 5114957 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5368743 5369245 L1PA7 6471 + 5096 5599 33847 460 13 14 29 chain 2178 chr9 138394717 + 5369245 5369284 L1PA7 6471 + 5603 5645 105389 18 5 8 16 chain 28037 chr9 138394717 + 5369284 5369615 L1PA7 6471 + 5654 5983 44804 204 0 1 10 4 1 113 chain 39890 chr9 138394717 + 5369615 5370090 L1PA7 6471 + 5988 6470 34746 143 1 0 184 1 0 82 0 9 64 chain 3496 chr9 138394717 + 5388757 5388902 MIR 256 + 95 241 95272 29 91 92 25 chain 115843 chr9 138394717 + 5403883 5405324 L1PA10 4194 + 2689 4150 16269 13 0 1 167 1 0 39 4 8 212 1 0 141 2 1 673 4 25 148 3 0 33 chain 31528 chr9 138394717 + 5409153 5409547 MLT2A1 477 + 0 394 40718 168 1 5 212 4 0 9 chain 5175 chr9 138394717 + 5430150 5430257 LTR40a 516 + 382 507 84795 21 15 0 7 14 47 50 chain 148777 chr9 138394717 + 5432498 5435334 SVA_A 1864 + 6 1864 12437 9 3 0 430 0 39 138 3 0 23 40 0 44 3 0 35 919 0 39 1 0 77 2 0 46 35 0 61 3 0 33 3 0 76 8 6 45 5 8 29 1 0 23 8 6 33 3 0 658 chain 24255 chr9 138394717 + 5433226 5434103 SVA_A 1864 + 687 838 35110 3 2 0 89 767 43 16 chain 2135 chr9 138394717 + 5434109 5434142 SVA_A 1864 + 1025 1058 57260 33 chain 968 chr9 138394717 + 5434310 5434345 SVA_A 1864 + 1070 1108 35110 4 1 4 30 chain 33722 chr9 138394717 + 5445269 5445656 L1PA5 6144 + 5757 6144 38905 387 chain 5112 chr9 138394717 + 5484746 5484813 MER44A 345 + 156 228 85099 60 0 5 7 chain 18541 chr9 138394717 + 5490991 5491199 L1PA5 6144 + 5930 6138 58056 208 chain 29472 chr9 138394717 + 5500639 5501047 LTR46 455 + 0 455 42635 188 3 1 112 2 1 55 12 62 36 chain 191391 chr9 138394717 + 5504204 5506915 L1PREC2 3366 + 265 2951 10050 24 1 0 81 0 1 6 1 0 23 1 0 67 2 1 28 0 5 275 5 1 71 3 4 12 12 12 39 6 3 392 1 0 192 0 2 85 9 0 9 1 0 81 1 0 84 12 9 225 8 9 67 0 3 247 0 1 159 5 4 146 3 12 107 2 0 16 1 2 36 1 0 44 7 3 14 29 21 12 2 0 5 8 5 11 3 1 29 chain 242695 chr9 138394717 + 5539853 5543203 L1PB1 5432 + 1925 5289 8405 273 0 8 89 0 1 261 0 17 49 1 2 123 31 33 30 0 1 6 3 0 6 4 6 4 1 0 423 6 7 147 1 6 54 0 3 195 5 42 177 10 2 124 4 0 261 0 1 28 0 1 140 0 6 6 6 0 9 5 0 155 0 1 9 4 0 165 2 10 37 1 2 150 4 2 106 1 2 9 39 0 13 8 7 12 19 14 8 2 0 52 2 1 15 1 0 45 1 0 8 chain 49601 chr9 138394717 + 5572093 5572737 L1PA8 5853 + 5187 5846 29726 334 1 0 43 1 0 46 2 0 69 1 0 8 3 1 12 10 11 22 8 29 84 chain 20150 chr9 138394717 + 5631465 5631706 AluSc 308 + 60 300 56188 71 2 1 168 chain 154905 chr9 138394717 + 5685088 5686789 L1PA2 6032 + 4329 6031 12063 284 0 1 1417 chain 369647 chr9 138394717 + 5779201 5783959 L1PA7 6471 + 0 6465 5668 139 33 32 36 2 0 5 0 2 152 8 7 27 2 3 28 10 14 155 5 8 146 1 0 129 4 0 98 15 47 180 0 1 10 1 0 59 16 15 15 0 7 203 3 1 414 0 1 226 0 5 94 2 3 375 1 0 42 3 0 124 0 4 82 3 1646 412 4 6 91 0 1 63 1 0 230 0 8 127 0 5 100 0 1 24 0 4 19 0 4 78 1 0 19 0 3 337 3 0 392 3 0 6 chain 11148 chr9 138394717 + 5830129 5830300 MER30 238 + 34 238 68345 59 3 33 23 5 11 30 3 0 48 chain 40353 chr9 138394717 + 5882706 5883169 L1PA5 6144 + 5567 6144 34411 81 5 119 377 chain 6228 chr9 138394717 + 5889796 5889867 HSMAR1 1287 + 1216 1287 80246 71 chain 6562 chr9 138394717 + 5890148 5890227 U13_ 108 + 0 79 79111 79 chain 257902 chr9 138394717 + 5961892 5965069 L1PA2 6032 + 2857 6032 8028 246 7 0 1122 0 4 390 0 1 1412 chain 6135 chr9 138394717 + 5981925 5982019 L1PB1 5432 + 5333 5422 80579 13 2 0 24 1 0 22 2 1 11 1 0 18 chain 31016 chr9 138394717 + 6020020 6020461 LTR7 482 + 0 476 41108 12 0 1 83 20 19 109 0 1 5 0 31 104 1 2 10 5 7 92 chain 114415 chr9 138394717 + 6020469 6022201 HERVH-int 3825 + 0 1774 16486 281 0 2 50 1 0 31 16 17 76 0 61 17 1 0 21 91 32 18 15 0 8 34 126 38 1 0 125 8 9 317 15 0 170 16 4 28 41 25 11 0 6 91 11 6 79 0 4 121 chain 5462 chr9 138394717 + 6035575 6035753 L1PREC2 3366 + 2888 3040 83396 11 12 7 14 7 5 19 44 27 35 6 4 30 chain 34806 chr9 138394717 + 6078707 6079199 LTR10D 510 + 0 494 38155 6 1 0 65 5 7 12 3 5 4 1 0 133 14 16 171 2 0 75 chain 37853 chr9 138394717 + 6087347 6087859 LTR10D 510 + 0 510 36174 77 0 2 23 3 0 127 1 0 5 6 9 176 2 0 48 2 1 42 chain 15680 chr9 138394717 + 6099161 6099361 MLT2A1 477 + 1 198 61421 5 1 0 163 4 1 9 0 1 18 chain 463538 chr9 138394717 + 6099362 6105100 HERVL-int 5654 + 33 5653 4036 26 0 1 10 1 0 97 0 2 426 0 1 194 2 0 58 1 0 855 6 0 867 0 10 90 4 6 5 2 0 56 0 3 91 0 4 240 0 5 302 0 2 706 5 6 73 0 5 582 1 7 9 3 1 315 0 1 43 152 1 85 3 0 8 0 1 187 0 2 36 0 1 32 0 3 165 chain 13278 chr9 138394717 + 6104432 6104584 HERVL-int 5654 + 4320 4472 64126 152 chain 28701 chr9 138394717 + 6105108 6105557 MLT2A1 477 + 7 477 43797 162 4 1 9 0 1 16 37 36 153 31 55 37 chain 2994 chr9 138394717 + 6114785 6114833 MER52A 1651 + 897 936 99894 23 9 0 16 chain 545940 chr9 138394717 + 6135847 6141850 L1PA2 6032 + 3 6032 972 71 0 1 182 1 0 1480 0 1 665 0 26 364 0 1 2444 1 0 39 0 1 748 2 0 6 chain 448937 chr9 138394717 + 6203264 6208688 L1PA7 6471 + 1030 6465 4413 180 0 4 29 22 41 57 0 1 4 1 0 107 0 2 314 31 17 240 0 1 547 0 1 57 0 1 127 7 11 329 0 4 399 1 0 26 4 3 74 0 1 6 1 0 222 0 1 168 4 0 1595 0 4 18 3 2 594 11 1 239 0 1 7 chain 26355 chr9 138394717 + 6262329 6262619 AluYd8 298 + 0 289 47190 120 1 0 169 chain 14019 chr9 138394717 + 6289793 6290453 L1MC1 2226 + 1746 2034 63562 29 0 2 67 18 15 28 48 41 23 368 9 19 3 0 13 2 0 42 chain 546194 chr9 138394717 + 6295355 6301521 L1PA4 6152 + 0 6151 958 557 1 2 237 5 1 4362 0 2 640 14 0 350 chain 400005 chr9 138394717 + 6315595 6321607 L1PB1 5432 + 91 5396 5153 87 19 2 223 1 0 179 18 20 358 1 2 171 0 1 261 1 0 7 2 0 5 35 11 196 3 0 162 0 2 66 0 4 205 3 0 241 296 0 200 325 4 56 0 1 27 0 5 249 7 6 94 21 18 767 0 7 102 21 0 168 8 1 199 1 0 225 0 7 198 3 0 97 4 0 33 7 15 299 0 8 22 1 0 14 13 0 22 26 20 9 2 0 53 4 3 14 1 0 44 1 0 15 3 0 7 15 6 5 1 0 13 8 5 14 10 8 16 1 0 21 1 0 5 chain 519900 chr9 138394717 + 6335882 6342006 L1PA5 6144 + 0 6144 2281 128 1 15 11 1 13 40 4 5 957 9 0 972 0 1 747 15 8 307 1 2 854 5 0 155 0 5 127 1 0 325 0 3 13 0 1 1393 0 4 58 chain 173579 chr9 138394717 + 6374208 6376264 L1P1 4361 + 4 2070 10918 1019 0 1 24 5 7 259 5 6 96 0 5 397 0 1 251 chain 521856 chr9 138394717 + 6376273 6382430 L1PA5 6144 + 3 6139 2186 434 24 18 118 4 3 161 3 2 1458 0 2 965 13 1 151 0 1 356 1 0 3 1 0 1058 2 0 359 1 0 797 0 1 248 chain 19833 chr9 138394717 + 6385598 6385943 L1MA3 4352 + 312 627 56628 23 0 22 19 65 21 6 5 0 22 4 1 201 chain 7692 chr9 138394717 + 6393713 6393868 L1MA3 4352 + 4210 4352 75646 25 4 0 25 2 0 22 2 1 5 1 0 22 5 4 14 1 0 5 5 2 17 chain 6328 chr9 138394717 + 6402683 6402837 MLT1H 522 + 53 208 79902 39 19 19 41 40 41 15 chain 11875 chr9 138394717 + 6458575 6458715 L1PA7 6471 + 5813 5961 67061 82 0 8 58 chain 42414 chr9 138394717 + 6458719 6459209 L1PA7 6471 + 5962 6452 33121 490 chain 3510 chr9 138394717 + 6557057 6557105 L1MA5A 2387 + 2253 2300 95173 43 1 0 4 chain 3785 chr9 138394717 + 6574141 6574222 MER5A 189 + 0 74 92954 12 28 21 41 chain 125154 chr9 138394717 + 6622239 6623631 SVA_D 2077 + 13 2077 14678 44 0 2 8 0 17 677 0 652 25 0 1 10 0 1 620 1 0 7 chain 68187 chr9 138394717 + 6735759 6736623 THE1B-int 1605 + 1 893 24411 33 0 2 396 0 25 29 0 1 406 chain 11011 chr9 138394717 + 6737163 6737345 L1P4 1494 + 1270 1443 68541 5 1 0 75 1 0 40 2 0 16 10 7 24 2 0 6 chain 29335 chr9 138394717 + 6752051 6752361 AluYg6 310 + 0 309 42830 131 1 0 178 chain 154939 chr9 138394717 + 6806926 6808707 SVA_F 1814 + 10 1814 12060 313 0 6 551 2 0 51 0 1 15 5 19 43 0 78 90 1 0 10 79 0 611 0 6 10 chain 6887 chr9 138394717 + 6808008 6808086 SVA_F 1814 + 1011 1089 57467 78 chain 26116 chr9 138394717 + 6854254 6854555 AluSp 311 + 8 311 47543 83 0 3 208 1 0 9 chain 15414 chr9 138394717 + 7141179 7141405 MER107 203 + 0 203 61768 106 0 2 32 24 0 5 1 0 58 chain 4513 chr9 138394717 + 7152471 7152526 L1MB3 1562 + 1363 1418 88246 55 chain 65225 chr9 138394717 + 7183166 7183948 LTR17 781 + 0 781 25128 327 0 1 4 10 8 441 chain 419402 chr9 138394717 + 7217147 7222128 L1PA6 6164 + 1186 6158 4884 439 0 1 5 1 0 694 31 0 864 0 1 33 2 1 16 7 11 15 1 6 127 0 7 276 14 16 981 1 0 633 0 4 35 0 1 806 chain 3043 chr9 138394717 + 7226441 7226474 MLT1H-int 1039 + 691 724 99398 33 chain 8915 chr9 138394717 + 7301479 7301591 MER2 342 + 217 329 72750 112 chain 83604 chr9 138394717 + 7308705 7309735 MER11C 1089 + 0 1060 20890 264 0 3 52 1 18 253 8 9 73 0 1 102 0 8 76 0 1 67 1 0 133 chain 83575 chr9 138394717 + 7411464 7412720 L1PA14 3548 + 2208 3459 20896 15 1 2 6 0 5 48 0 3 81 0 5 164 1 0 25 0 2 125 1 0 87 0 2 160 3 1 14 2 0 34 15 13 5 2 0 87 1 5 13 4 0 21 2 0 7 8 6 40 5 0 37 1 0 51 8 11 49 15 11 6 0 1 29 4 2 12 1 0 5 1 0 16 1 0 37 0 2 6 chain 92495 chr9 138394717 + 7482123 7483305 L1PA10 4194 + 2959 4150 19273 91 3 0 146 0 1 156 0 1 82 0 5 209 0 4 314 1 2 78 4 7 61 8 5 29 chain 10924 chr9 138394717 + 7547536 7547743 MER2 342 + 136 342 68660 112 55 54 40 chain 403310 chr9 138394717 + 7549114 7554735 L1PA8A 6298 + 77 6291 5114 24 3 0 18 21 12 18 1 0 7 3 2 12 1 0 7 1 0 12 2 0 15 7 4 13 1 0 8 3 2 4 1 0 9 18 12 10 2 0 14 2 5 12 12 11 22 8 0 78 0 2 10 3 2 9 6 4 80 44 42 247 6 2 205 1 26 45 2 1 17 3 13 13 0 3 6 3 1 13 0 1 52 0 3 212 0 1 11 0 1 202 0 1 117 0 12 223 41 529 69 0 1 34 0 3 137 0 4 190 0 1 12 1 5 57 0 1 177 1 0 15 0 1 145 1 0 39 1 0 5 6 10 22 0 14 398 10 12 13 6 10 113 0 1 23 0 1 185 0 16 82 9 2 43 0 1 235 0 2 293 14 0 68 9 0 217 4 1 142 0 1 5 1 0 85 0 2 6 0 1 55 0 4 12 1 0 4 0 4 16 3 62 107 1 0 178 0 5 307 26 25 98 chain 5405 chr9 138394717 + 7624268 7624348 MADE1 96 + 0 96 83681 30 3 19 47 chain 488644 chr9 138394717 + 7626570 7632664 L1PA7 6471 + 380 6470 3451 32 16 1 60 1 0 5 0 1 527 0 24 1069 3 5 411 5 7 110 15 0 257 0 4 108 0 2 76 1 0 4 5 6 370 0 1 24 15 13 48 1 5 31 1 0 208 0 1 214 10 9 410 26 0 201 11 12 210 0 1 102 1 0 257 1 0 254 9 14 62 0 1 88 0 5 72 2 1 374 0 5 52 1 2 195 0 1 134 1 0 4 chain 3749 chr9 138394717 + 7646077 7646127 MLT2A2 560 + 514 560 93260 6 4 0 40 chain 72286 chr9 138394717 + 7667779 7668578 L1P1 4361 + 3468 4266 23467 683 1 0 115 chain 28220 chr9 138394717 + 7679912 7680215 AluYb8 318 + 15 318 44537 303 chain 117280 chr9 138394717 + 7692276 7693842 THE1D-int 1627 + 15 1627 16004 315 4 6 353 0 2 5 2 0 114 36 79 408 6 9 33 5 4 234 1 0 50 chain 505037 chr9 138394717 + 7712932 7719036 L1PA6 6164 + 1 6162 2970 236 0 1 279 0 2 48 1 0 223 1 18 42 0 1 341 1 0 260 4 5 33 9 17 591 0 1 239 12 14 467 0 1 173 0 1 169 0 2 19 0 1 249 0 1 263 4 0 246 0 11 413 0 4 41 0 1 247 0 1 123 22 0 496 26 35 13 0 1 675 0 19 92 18 18 28 chain 3839 chr9 138394717 + 7733678 7733725 MLT2B3 573 + 526 573 92575 47 chain 6205 chr9 138394717 + 7815913 7815981 L1PA2 6032 + 5779 5847 80338 68 chain 5314 chr9 138394717 + 7819986 7820052 L1MB8 1703 + 1524 1590 84121 66 chain 23103 chr9 138394717 + 7852554 7852843 MER57A1 433 + 0 288 52208 280 1 0 8 chain 92673 chr9 138394717 + 7867516 7868552 L1PA3long 6157 + 5111 6149 19242 434 7 9 595 chain 384951 chr9 138394717 + 7880652 7886062 L1PA8 5853 + 479 5853 5399 44 103 84 29 6 0 8 13 20 65 19 12 5 1 0 10 9 9 17 1 4 380 0 1 4 13 32 123 17 18 183 4 6 180 4 3 64 3 6 117 5 6 393 21 0 350 0 1 128 41 1 100 5 0 25 3 0 12 0 2 40 7 10 188 0 1 61 3 0 265 0 1 42 0 1 61 1 0 111 0 3 54 1 3 430 1 0 6 1 0 96 2 7 136 8 25 215 0 2 5 1 0 325 0 2 290 1 0 81 0 2 32 0 3 145 1 0 44 2 0 71 1 0 5 19 18 38 2 1 15 7 6 91 chain 14314 chr9 138394717 + 7908894 7909164 L1PB1 5432 + 5178 5423 63174 42 2 1 16 6 5 38 1 0 16 3 0 6 19 9 16 2 0 4 1 0 17 2 0 22 1 0 21 1 0 12 1 0 16 1 0 4 chain 24357 chr9 138394717 + 7943174 7943545 THE1C 375 + 0 373 50241 48 1 0 4 0 1 13 0 2 105 20 21 35 20 20 100 1 0 24 chain 10247 chr9 138394717 + 8019375 8019486 L1PA3long 6157 + 4326 4437 69909 111 chain 104303 chr9 138394717 + 8047717 8049260 L1PB1 5432 + 3898 5410 17782 210 11 0 85 6 5 367 0 1 39 0 4 12 0 1 14 0 1 61 1 2 104 3 11 288 26 24 7 2 0 13 5 4 7 4 0 9 2 0 53 2 1 16 1 0 43 1 0 15 4 0 16 9 0 16 31 26 17 1 0 21 1 0 13 1 0 6 chain 3106 chr9 138394717 + 8121504 8121566 L1MA4 2864 + 2776 2830 98727 33 16 8 13 chain 57582 chr9 138394717 + 8197430 8198112 L1PA7 6471 + 5787 6469 27084 682 chain 29908 chr9 138394717 + 8290908 8291228 AluYb8 318 + 0 318 42125 132 2 0 186 chain 327420 chr9 138394717 + 8333418 8337583 L1PA7 6471 + 2169 6439 6259 224 0 1 134 0 26 86 2 0 33 4 1 126 5 0 89 0 4 115 0 3 69 4 0 67 5 1 4 0 1 237 0 4 159 0 25 251 0 1 19 1 13 146 0 1 49 1 6 518 0 3 80 1 13 59 1 17 64 0 4 235 0 8 125 3 2 8 0 1 82 0 7 41 19 18 148 11 1 120 1 4 91 0 4 407 13 3 100 0 8 139 1 2 28 7 2 33 chain 5394 chr9 138394717 + 8398836 8398908 MLT1A1 405 + 333 405 83729 72 chain 11889 chr9 138394717 + 8496789 8496952 MER30 238 + 54 238 67033 53 3 27 98 3 0 6 chain 4169 chr9 138394717 + 8739435 8739534 MER3 215 + 106 215 90322 18 28 44 7 6 0 40 chain 55384 chr9 138394717 + 8747250 8747885 HERV17-int 4347 + 3712 4347 27747 635 chain 27596 chr9 138394717 + 8748196 8748523 LTR17 781 + 0 326 45459 119 0 9 171 10 0 27 chain 46789 chr9 138394717 + 8752077 8752633 MER41A 554 + 0 554 30734 419 1 0 22 1 0 113 chain 44357 chr9 138394717 + 8800287 8800841 MER41A 554 + 0 554 31911 165 1 0 229 0 1 159 chain 9494 chr9 138394717 + 8991247 8991386 MER39 703 + 531 671 71489 15 1 0 4 9 11 110 chain 44346 chr9 138394717 + 9015150 9015707 MER41A 554 + 0 554 31920 39 7 8 477 4 0 30 chain 15206 chr9 138394717 + 9021918 9022139 L1PA8 5853 + 5636 5853 62033 42 13 11 51 2 1 19 2 1 92 chain 213287 chr9 138394717 + 9081916 9084563 L1PA7 6471 + 3762 6467 9226 22 0 1 239 5 9 150 0 2 21 9 11 121 5 57 100 7 8 697 0 1 28 3 1 197 0 1 194 2 0 7 5 6 10 1 0 4 0 1 381 0 1 265 2 0 30 0 1 118 0 1 14 4 0 6 chain 7524 chr9 138394717 + 9094194 9094305 L1PB2 3958 + 3723 3830 76068 31 2 0 14 1 0 7 1 0 55 chain 3454 chr9 138394717 + 9168088 9168234 MER58A 224 + 50 210 95609 37 90 104 19 chain 47953 chr9 138394717 + 9180073 9180607 L1PA4 6152 + 5617 6151 30313 534 chain 24456 chr9 138394717 + 9190245 9190557 THE1A 353 + 0 353 50097 181 0 1 87 0 40 44 chain 41677 chr9 138394717 + 9206434 9206975 MLT2A2 560 + 0 560 33572 169 4 0 198 0 12 27 17 28 126 chain 227401 chr9 138394717 + 9243165 9245758 L1PA4 6152 + 3512 6130 8831 101 0 1 324 1 2 411 0 4 647 0 1 626 1 19 482 chain 22437 chr9 138394717 + 9344160 9344493 L1PA8 5853 + 5527 5853 53222 37 1 0 46 2 0 56 1 2 12 1 0 14 2 0 46 2 1 15 6 5 92 chain 460507 chr9 138394717 + 9425928 9431301 L1PA5 6144 + 0 5381 4114 575 0 1 559 0 2 32 9 0 442 0 1 644 0 2 55 2 1 135 0 9 717 0 1 58 0 1 38 1 2 1353 1 0 23 0 1 729 chain 20451 chr9 138394717 + 9442066 9442294 7SLRNA 320 + 7 235 55830 228 chain 48699 chr9 138394717 + 9594754 9595853 L1PB1 5432 + 4489 5346 30052 137 6 0 339 1 0 14 417 201 40 3 2 14 1 0 45 1 0 15 14 1 30 2 0 5 2 1 13 chain 46359 chr9 138394717 + 9641540 9642650 PABL_A 660 + 29 653 30903 55 0 9 87 1 0 85 12 10 4 0 1 114 0 1 32 494 0 226 chain 45414 chr9 138394717 + 9641935 9642423 L1PA2 6032 + 5539 6027 31355 488 chain 25083 chr9 138394717 + 9657249 9657602 L1PA7 6471 + 6104 6461 49145 33 5 8 157 1 0 7 13 15 137 chain 98460 chr9 138394717 + 9677365 9678478 L1PA4 6152 + 3785 4899 18483 692 1 2 420 chain 22000 chr9 138394717 + 9738003 9738254 L1PA4 6152 + 5892 6143 53832 251 chain 13646 chr9 138394717 + 9806451 9806641 LTR7B 505 + 180 425 64096 49 1 57 4 1 0 117 0 1 4 1 0 13 chain 4275 chr9 138394717 + 9810005 9810053 Tigger2 2703 + 2272 2320 89661 48 chain 113272 chr9 138394717 + 9826744 9828033 L1PA4 6152 + 4226 5520 16638 130 0 4 230 3 0 714 0 4 212 chain 56345 chr9 138394717 + 9839178 9839801 L1PA3long 6157 + 4121 4744 27474 623 chain 15498 chr9 138394717 + 9840611 9840790 AluSc 308 + 129 308 61657 179 chain 7162 chr9 138394717 + 9888984 9889363 L1MA8 2339 + 1999 2326 77064 10 1 0 75 266 215 27 chain 22363 chr9 138394717 + 9893169 9893456 L1PA13 3608 + 761 1046 53328 126 1 0 12 1 0 147 chain 535996 chr9 138394717 + 9931214 9937220 L1PA3long 6157 + 0 6142 1563 152 0 1 615 8 136 2287 1 0 41 0 4 727 0 2 284 4 1 42 0 2 377 2 1 638 7 11 821 chain 75702 chr9 138394717 + 10018916 10019757 L1PA4 6152 + 5129 5971 22654 165 0 1 676 chain 120931 chr9 138394717 + 10028340 10029854 THE1B-int 1605 + 0 1599 15358 432 0 25 15 0 37 19 0 1 146 12 22 508 0 12 382 chain 28243 chr9 138394717 + 10031253 10031647 MLT2A1 477 + 5 407 44498 12 0 4 25 0 1 95 2 3 23 1 5 142 1 2 6 1 0 43 3 0 16 0 1 24 chain 10587 chr9 138394717 + 10034018 10034153 L1P4 1494 + 676 813 69249 130 0 2 5 chain 56836 chr9 138394717 + 10097869 10098503 L1PA4 6152 + 5517 6151 27314 634 chain 107978 chr9 138394717 + 10136557 10137714 L1HS 6032 + 4875 6032 17330 1157 chain 34159 chr9 138394717 + 10140329 10140721 L1PA3long 6157 + 3224 3617 38591 296 0 1 96 chain 230795 chr9 138394717 + 10140723 10143283 L1PA3long 6157 + 3618 6156 8727 437 1 0 710 22 0 1099 0 1 291 chain 70111 chr9 138394717 + 10229066 10229862 L1PA4 6152 + 5355 6151 23971 796 chain 494085 chr9 138394717 + 10300218 10306428 L1PA7 6471 + 0 6464 3308 31 0 256 217 17 8 6 0 4 22 0 2 839 0 3 12 15 12 280 2 1 473 0 5 310 0 2 154 1 3 257 0 3 415 0 1 164 9 6 7 0 1 774 0 1 187 4 5 185 8 6 6 0 2 11 6 10 180 0 1 93 1 0 119 1 5 187 2 0 172 14 1 182 2 0 700 2 0 143 chain 120189 chr9 138394717 + 10422035 10423463 L1PA6 6164 + 4728 6161 15505 74 0 1 175 6 7 186 0 1 93 9 14 36 1 0 839 2 0 7 chain 111748 chr9 138394717 + 10431224 10432449 L1PA2 6032 + 4807 6032 16843 702 0 1 186 1 0 336 chain 102848 chr9 138394717 + 10449042 10450256 SVA_C 1631 + 23 1626 17971 12 0 5 7 1 9 152 0 1 370 0 3 58 0 376 598 4 0 12 chain 49434 chr9 138394717 + 10467884 10468487 L1PA7 6471 + 5695 6297 29791 8 2 0 341 0 1 252 chain 13713 chr9 138394717 + 10468487 10468649 L1PA7 6471 + 6299 6461 63999 162 chain 14268 chr9 138394717 + 10470858 10471046 L1PA7 6471 + 6017 6210 63241 31 0 1 8 0 1 78 2 3 20 0 1 22 0 1 27 chain 8531 chr9 138394717 + 10471046 10471142 L1PA7 6471 + 6211 6307 73620 96 chain 3053 chr9 138394717 + 10471145 10471205 L1PA7 6471 + 6311 6377 99268 18 7 5 27 0 8 8 chain 7155 chr9 138394717 + 10471213 10471301 L1PA7 6471 + 6377 6465 77082 88 chain 324849 chr9 138394717 + 10473937 10478144 L1PA8 5853 + 1643 5853 6313 231 0 1 29 1 3 112 5 0 33 3 1 221 9 13 105 0 2 511 4 3 231 1 4 78 1 0 117 0 5 83 0 1 164 7 4 32 6 5 159 2 1 315 3 0 108 1 0 361 0 3 51 2 1 59 0 5 314 2 0 47 4 6 335 0 1 166 1 0 44 2 0 68 6 7 5 1 0 56 5 4 10 4 3 92 chain 17058 chr9 138394717 + 10487593 10487811 L1PA8A 6298 + 6071 6285 59747 187 4 0 27 chain 30045 chr9 138394717 + 10492858 10493273 L1PA7 6471 + 4565 4985 42006 108 16 20 266 3 4 22 chain 27378 chr9 138394717 + 10493280 10493596 L1PA7 6471 + 4991 5307 45730 316 chain 28550 chr9 138394717 + 10498751 10499054 AluYa5 310 + 0 301 44035 97 2 0 204 chain 3607 chr9 138394717 + 10507015 10507059 L1PA5 6144 - 2076 2120 94362 44 chain 134712 chr9 138394717 + 10507059 10508584 L1PA5 6144 + 4244 5772 13568 247 1 0 798 2 6 477 chain 32873 chr9 138394717 + 10529167 10529555 L1PA7 6471 + 5908 6296 39611 388 chain 13784 chr9 138394717 + 10529555 10529719 L1PA7 6471 + 6297 6461 63905 164 chain 4417 chr9 138394717 + 10529726 10529774 L1PA8 5853 + 5516 5564 88795 48 chain 3596 chr9 138394717 + 10529775 10529819 L1PA8 5853 + 5564 5608 94458 44 chain 9886 chr9 138394717 + 10529821 10529958 L1PA8 5853 + 5608 5743 70647 70 2 1 9 2 1 54 chain 7174 chr9 138394717 + 10529960 10530063 L1PA8 5853 + 5744 5846 77033 13 5 4 85 chain 90551 chr9 138394717 + 10559551 10560574 L1PA3long 6157 + 5139 6157 19586 498 0 1 512 6 0 7 chain 59010 chr9 138394717 + 10568607 10569278 L1PA4 6152 + 4825 5498 26662 480 0 2 191 chain 36450 chr9 138394717 + 10592558 10593095 LTR12F 595 + 0 584 37103 78 0 37 32 2 0 30 0 8 25 14 29 150 5 0 6 0 1 6 11 14 33 11 1 134 chain 82584 chr9 138394717 + 10708397 10709351 L1PA5 6144 + 5191 6144 21105 100 0 4 142 4 0 594 1 0 113 chain 122337 chr9 138394717 + 10719773 10721154 L1PA5 6144 + 4747 6130 15138 877 0 1 165 0 1 339 chain 67130 chr9 138394717 + 10742775 10743605 L1PA7 6471 + 5634 6466 24670 66 0 1 471 9 10 255 0 1 4 4 3 21 chain 40159 chr9 138394717 + 10747799 10748283 L1PA7 6471 + 5960 6446 34551 353 1 3 130 chain 99727 chr9 138394717 + 10750787 10751915 L1P1 4361 + 3205 4328 18330 946 2 1 85 3 0 68 1 0 23 chain 72087 chr9 138394717 + 10769684 10770505 L1PA5 6144 + 5323 6144 23515 59 0 1 508 1 0 253 chain 530617 chr9 138394717 + 10778293 10784424 L1PA5 6144 + 3 6139 1802 484 0 4 89 0 2 6 1 2 158 7 2 940 0 1 196 0 1 41 2 0 416 1 0 748 0 1 63 2 1 12 1 0 338 0 1 835 0 4 729 5 6 227 0 3 530 6 1 157 0 1 137 chain 21236 chr9 138394717 + 10815213 10815505 L1PA16 3655 + 3092 3382 54839 28 5 6 78 1 0 86 2 0 92 chain 12018 chr9 138394717 + 10836427 10836566 LTR12C 1709 + 932 1071 66820 139 chain 57651 chr9 138394717 + 10846262 10852564 L1PA3long 6157 + 5239 6157 27070 119 5384 0 799 chain 242792 chr9 138394717 + 10885378 10888548 HERVH-int 3825 + 0 3561 8403 282 3 0 51 1 0 136 1 0 4 9 12 36 7 7 11 2 211 30 1 0 58 0 3 85 2 1 259 8 1 36 6 0 208 9 0 24 1 3 114 5 0 33 1 2 446 0 1 31 16 17 328 52 48 321 1 0 309 49 259 194 chain 5580 chr9 138394717 + 10890709 10890798 LTR7B 505 + 409 497 82895 31 15 14 43 chain 171982 chr9 138394717 + 10900832 10902836 L1PA6 6164 + 4136 6159 10999 542 0 1 206 1 0 430 2 0 6 1 4 293 0 18 216 0 1 157 0 1 23 2 0 125 chain 5110 chr9 138394717 + 10911796 10911857 LTR12D 1347 + 1121 1182 85109 61 chain 12359 chr9 138394717 + 10947832 10947972 L1PA7 6471 + 6317 6458 66215 4 0 1 136 chain 272484 chr9 138394717 + 10948798 10951860 L1PA4 6152 + 2294 5357 7643 1375 2 3 5 3 0 5 0 1 113 0 1 1180 0 1 379 chain 90507 chr9 138394717 + 10959658 10960818 HERVL-int 5654 + 3318 4505 19592 53 1 0 452 1 0 317 0 13 49 0 11 152 4 8 9 0 1 122 chain 70821 chr9 138394717 + 10976652 10977572 L1PBa 3878 + 1343 2268 23801 104 0 2 98 0 1 4 1 0 65 3 0 5 7 10 225 0 1 89 0 1 133 0 1 186 chain 125560 chr9 138394717 + 10993018 10994607 THE1A-int 1579 + 0 1579 14617 474 5 6 497 14 3 599 chain 46137 chr9 138394717 + 11029042 11029586 L1P1 4361 + 3800 4341 30990 351 1 0 154 1 0 23 2 1 12 chain 15464 chr9 138394717 + 11040582 11040827 MER1B 344 + 92 339 61703 129 3 0 46 15 19 24 8 9 20 chain 26325 chr9 138394717 + 11110676 11111047 L1M1 2793 + 2316 2685 47233 118 2 0 5 0 1 188 10 9 13 0 1 23 1 0 11 chain 24612 chr9 138394717 + 11121284 11121641 L1PA8 5853 + 5495 5853 49850 61 18 17 35 2 0 38 5 13 23 1 0 6 1 0 52 2 1 19 1 0 93 chain 129441 chr9 138394717 + 11196697 11198274 LTR12C 1709 + 0 1709 14098 262 4 5 19 0 13 518 21 139 155 1 0 6 2 0 107 0 4 314 1 0 167 chain 42959 chr9 138394717 + 11223594 11224066 L1PA3long 6157 + 5678 6150 32798 472 chain 135611 chr9 138394717 + 11247653 11249198 L1PA4 6152 + 3810 5347 13477 970 10 2 565 chain 7551 chr9 138394717 + 11265467 11265559 MER44A 345 + 105 197 75993 92 chain 199227 chr9 138394717 + 11285871 11288109 L1PA4 6152 + 2990 5219 9740 967 0 2 821 13 2 437 chain 11307 chr9 138394717 + 11325094 11325220 SVA_A 1864 + 1737 1863 68075 126 chain 27773 chr9 138394717 + 11361106 11361466 MLT2A2 560 + 29 399 45225 292 1 0 4 13 24 50 chain 114513 chr9 138394717 + 11475725 11477179 L1PA8 5853 + 4396 5853 16473 219 0 1 388 2 0 5 10 0 329 0 1 225 1 0 23 0 2 19 2 0 48 6 23 9 1 0 52 2 1 22 1 0 90 chain 161636 chr9 138394717 + 11543537 11545386 L1PA5 6144 + 4296 6141 11633 262 1 0 57 2 3 1122 4 1 85 2 1 314 chain 136280 chr9 138394717 + 11570855 11572433 L1PA5 6144 + 3928 5513 13413 414 3 7 279 3 0 795 1 0 21 0 7 62 chain 64277 chr9 138394717 + 11589689 11590709 L1PB1 5432 + 4203 5422 25355 81 0 2 159 0 1 4 3 0 177 1 0 105 0 60 41 0 1 116 9 18 15 42 193 44 2 1 10 6 5 45 1 0 11 36 26 9 2 0 4 1 0 15 2 0 24 1 0 14 8 7 13 1 0 18 chain 20239 chr9 138394717 + 11615624 11615911 MER4D1 891 + 0 310 56091 28 1 0 117 1 2 46 12 7 38 0 28 44 chain 4272 chr9 138394717 + 11629590 11629640 THE1D-int 1627 + 1516 1566 89691 50 chain 31633 chr9 138394717 + 11636617 11636976 L1PA5 6144 + 3052 3411 40637 359 chain 12119 chr9 138394717 + 11679782 11680006 L1PA13 3608 + 3245 3458 66637 28 2 0 39 29 27 47 1 0 10 2 0 47 2 0 5 2 0 10 chain 26562 chr9 138394717 + 11733756 11734034 AluYa5 310 + 27 305 46886 278 chain 418969 chr9 138394717 + 11765980 11772311 L1PA8 5853 + 101 5805 4895 101 0 3 9 0 1 90 19 23 483 5 7 121 3 0 137 0 1 205 0 3 228 0 5 50 0 1 72 7 6 25 39 15 141 302 0 146 0 28 21 2 0 230 40 41 42 11 7 103 1 2 38 0 2 182 0 9 132 0 12 258 372 0 119 0 1 20 0 4 90 1 0 4 7 9 95 20 10 4 1 0 179 0 13 139 0 1 33 0 2 291 1 3 531 2 1 152 0 1 99 20 6 40 1 2 72 1 6 33 0 1 42 0 2 136 0 3 339 1 0 44 2 0 48 2 6 20 1 0 5 2 1 52 2 1 19 3 2 43 chain 49538 chr9 138394717 + 11840359 11841029 L1PA10 4194 + 3426 4117 29751 223 0 4 63 17 29 42 6 10 138 0 2 145 1 0 35 chain 27787 chr9 138394717 + 11844973 11845290 L1PA3long 6157 + 5826 6142 45198 17 2 1 298 chain 29253 chr9 138394717 + 11856084 11856415 L1P1 4361 + 2688 3019 42957 331 chain 78109 chr9 138394717 + 11896575 11898044 L1PA7 6471 + 5461 6470 22070 160 1 0 17 0 2 60 2 3 442 459 0 114 13 9 45 0 1 156 chain 11498 chr9 138394717 + 11925309 11925495 L1PA14 3548 + 3195 3377 67753 26 7 6 104 1 0 11 7 5 30 chain 259735 chr9 138394717 + 11942870 11945839 L1PA4 6152 + 1405 4397 7976 231 11 12 193 1 2 339 0 2 113 3 0 844 2 0 29 0 1 411 0 1 423 0 22 369 chain 383678 chr9 138394717 + 12036814 12041935 L1PA8A 6298 + 1150 6292 5416 72 1 2 5 1 0 37 0 3 183 5 6 125 0 3 63 15 16 367 7 8 150 1 0 5 4 5 133 6 0 6 9 15 129 0 1 23 16 0 69 9 4 288 0 4 391 3 7 45 0 1 19 1 4 45 9 10 16 1 0 290 1 0 170 1 5 396 7 12 104 0 1 107 1 0 326 1 2 170 6 7 274 0 1 91 0 1 113 12 11 82 0 1 35 0 5 20 0 1 231 0 2 101 0 2 6 10 8 307 chain 4410 chr9 138394717 + 12078138 12078201 L1MB1 2102 + 1953 2007 88841 30 9 0 24 chain 182549 chr9 138394717 + 12141905 12144552 MER4-int 2692 + 1 2680 10467 9 2 1 24 3 1 55 10 11 16 0 1 55 1 2 413 3 4 125 2 0 112 5 6 87 0 22 118 9 0 39 1 0 288 0 16 37 0 5 11 7 10 39 2 0 35 0 1 211 1 2 20 4 8 102 12 11 36 12 11 56 10 8 177 13 21 18 0 1 4 18 17 15 0 2 8 8 0 66 4 5 141 2 0 167 6 1 28 chain 3730 chr9 138394717 + 12145681 12145769 MER84 505 + 0 74 93399 30 34 20 24 chain 8980 chr9 138394717 + 12212622 12212723 L1P1 4361 + 1541 1642 72598 101 chain 18834 chr9 138394717 + 12218714 12218973 L1PA8 5853 + 5600 5853 57733 8 2 0 70 2 1 11 1 0 50 2 1 19 4 3 90 chain 74864 chr9 138394717 + 12258535 12259512 L1PB1 5432 + 4117 5098 22878 187 0 1 4 2 1 299 10 15 180 12 11 283 chain 541279 chr9 138394717 + 12333994 12340025 L1PA3long 6157 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2571 2681 75373 43 5 0 26 7 6 35 chain 38317 chr9 138394717 + 12943857 12944296 L1PA6 6164 + 5720 6160 35834 389 0 1 50 chain 43550 chr9 138394717 + 12948344 12948825 LTR7 482 + 0 482 32414 400 1 2 80 chain 295249 chr9 138394717 + 12948827 12952383 HERVH-int 3825 + 0 3825 6973 476 0 56 38 1 0 9 2 1 19 1 0 5 28 0 15 1 0 12 7 45 22 2 1 57 0 1 6 0 2 13 0 3 448 15 0 456 4 31 44 1 0 664 21 0 646 9 11 39 8 218 487 chain 44251 chr9 138394717 + 12953647 12954128 LTR7 482 + 0 482 31980 224 0 1 257 chain 45628 chr9 138394717 + 12983211 12983713 L1PA3long 6157 + 5645 6157 31250 445 0 10 57 chain 551345 chr9 138394717 + 13037883 13043909 L1PA2 6032 + 0 6031 647 2661 1 0 471 0 1 1096 0 4 1653 0 1 144 chain 3505 chr9 138394717 + 13063023 13063072 MER3 215 - 46 163 95197 11 0 68 38 chain 40572 chr9 138394717 + 13099202 13099780 MER4B 649 + 0 642 34243 15 1 0 9 1 0 133 0 42 14 0 4 100 23 41 206 1 0 15 0 1 30 0 3 20 1 0 9 chain 24867 chr9 138394717 + 13152291 13152651 THE1B 368 + 0 368 49498 169 1 0 29 35 45 88 1 0 37 chain 12726 chr9 138394717 + 13160880 13161044 MER2 342 + 155 320 65570 113 0 1 51 chain 29544 chr9 138394717 + 13194322 13194712 L1PA8 5853 + 5465 5853 42553 16 0 5 78 1 0 47 2 0 67 2 1 8 1 3 5 2 0 49 1 0 16 1 0 87 1 0 6 chain 5343 chr9 138394717 + 13225149 13225264 Tigger3b 1229 + 648 762 83993 31 2 4 10 7 5 10 3 4 9 3 1 40 chain 4622 chr9 138394717 + 13270569 13270729 MER33 330 + 127 294 87688 19 46 52 39 7 11 7 4 0 11 7 8 20 chain 172975 chr9 138394717 + 13343526 13345507 L1PA4 6152 + 762 2750 10953 278 1 0 192 1 0 774 0 9 735 chain 163318 chr9 138394717 + 13389814 13392113 L1PA14 3548 + 1089 3453 11530 110 11 6 5 0 1 327 0 3 79 0 3 86 5 44 222 0 1 522 3 4 18 4 5 12 1 0 69 17 40 71 0 3 18 1 0 74 0 4 104 1 0 18 3 1 16 0 7 38 9 5 47 0 12 25 39 35 7 2 0 6 1 0 84 2 1 8 1 0 102 1 0 11 6 2 32 5 9 6 7 0 6 1 0 16 1 0 39 chain 155508 chr9 138394717 + 13663183 13665086 L1PA7 6471 + 3368 5273 12040 100 0 1 100 5 8 256 1 0 164 13 5 4 1 0 476 1 5 118 1 0 4 0 1 134 6 5 279 8 1 198 0 12 34 chain 81109 chr9 138394717 + 13699942 13700838 L1PA4 6152 + 4296 5192 21410 896 chain 479771 chr9 138394717 + 13791549 13798567 L1PA7 6471 + 5 6366 3640 192 15 14 118 17 211 181 4 14 45 6 9 421 0 4 138 0 10 311 6 7 585 2 1 253 10 6 107 9 0 60 11 12 72 2 3 98 0 2 6 3 5 322 1 0 13 897 16 310 12 4 89 2 0 191 0 5 114 1 2 48 9 14 656 0 4 942 1 0 4 20 19 28 0 3 419 0 1 42 0 1 67 3 7 155 chain 69566 chr9 138394717 + 13794581 13795383 L1PA4 6152 + 5272 6084 24103 10 0 4 80 0 1 17 1 0 222 0 6 472 chain 80371 chr9 138394717 + 13888757 13889686 L1PA6 6164 + 5234 6162 21556 81 1 0 847 chain 25693 chr9 138394717 + 13894420 13894934 L1PA15 4387 + 3835 4341 48184 12 4 5 5 1 0 34 3 1 40 1 0 71 0 2 73 54 52 55 1 0 23 14 9 18 27 35 44 3 1 14 5 0 12 chain 137482 chr9 138394717 + 13906776 13908339 L1PA5 6144 + 4559 6128 13306 738 0 5 692 3 4 130 chain 5281 chr9 138394717 + 13916653 13916718 MIR 256 + 103 168 84276 65 chain 328910 chr9 138394717 + 13995393 13999118 L1P1 4361 + 614 4341 6234 612 5 4 608 0 4 694 0 1 707 0 1 902 2 1 157 1 0 23 2 1 12 chain 61533 chr9 138394717 + 14000248 14000930 L1PA4 6152 + 5471 6152 25974 421 1 0 260 chain 6861 chr9 138394717 + 14141822 14141902 LTR12C 1709 + 1293 1372 78099 16 1 0 63 chain 5582 chr9 138394717 + 14150833 14150929 L1MA3 4352 + 4219 4311 82889 41 2 0 22 15 13 16 chain 36553 chr9 138394717 + 14367608 14368013 L1PA7 6471 + 6039 6444 37041 405 chain 264708 chr9 138394717 + 14457384 14460345 L1PA4 6152 + 3009 5968 7835 194 4 0 575 0 1 826 1 2 1361 chain 179884 chr9 138394717 + 14570772 14572883 L1PA7 6471 + 4359 6469 10590 626 2 0 444 0 1 109 0 1 8 1 0 9 0 1 35 0 1 27 1 0 509 0 1 328 2 0 10 chain 192751 chr9 138394717 + 14599776 14602148 L1PA7 6471 + 4079 6461 9980 585 4 8 259 0 4 50 8 6 284 0 1 27 1 0 26 1 2 283 0 3 66 0 1 620 12 11 146 chain 554403 chr9 138394717 + 14663995 14670015 L1PA2 6032 + 0 6030 455 614 0 4 89 0 7 4817 2 1 498 chain 387913 chr9 138394717 + 14681813 14686216 L1PA5 6144 + 1752 6144 5357 608 0 1 148 1 0 50 0 4 376 0 2 229 1 0 28 13 0 304 1 0 2276 1 0 216 0 1 137 3 1 11 chain 11179 chr9 138394717 + 14830618 14830755 LTR9B 643 + 451 588 68288 137 chain 130519 chr9 138394717 + 14834329 14836380 HUERS-P3b-int 2065 + 13 2052 13976 81 3 0 73 10 26 124 6 7 140 1 4 110 3 0 109 4 0 85 6 5 51 1 0 28 1 0 7 139 139 30 0 5 71 0 1 106 5 6 14 0 13 137 0 1 85 1 0 42 11 9 78 0 3 11 1 0 23 1 0 32 0 3 24 1 0 32 3 1 35 2 1 36 2 0 19 4 1 62 4 0 58 1 0 90 0 7 6 34 0 8 chain 30577 chr9 138394717 + 14836884 14837443 LTR9B 643 + 5 559 41494 13 6 0 51 0 2 32 0 8 17 7 9 50 0 1 13 5 7 13 11 12 43 0 1 4 9 10 130 42 40 13 7 4 56 10 0 12 2 0 13 chain 30397 chr9 138394717 + 14846121 14846520 L1PA8 5853 + 5456 5847 41678 106 1 0 48 2 0 69 1 0 7 1 0 8 1 0 46 2 1 19 2 1 86 chain 7827 chr9 138394717 + 14850439 14850534 U6 107 + 11 106 75301 95 chain 8371 chr9 138394717 + 14891959 14892054 MER41B 635 + 482 577 73969 95 chain 4149 chr9 138394717 + 14892103 14892149 MER41A 554 + 508 554 90468 46 chain 170595 chr9 138394717 + 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37 5 11 6 6 0 233 0 1 185 6 0 9 15 16 174 0 1 168 0 1 253 9 8 37 38 6 14 3 0 17 1 0 13 1 0 9 7 3 9 2 0 51 1 0 17 1 0 45 1 0 15 3 0 6 15 7 10 10 8 5 1 0 14 2 0 24 2 1 20 1 0 13 1 0 7 chain 115049 chr9 138394717 + 20181372 20182779 L1PA6 6164 + 4740 6151 16383 205 5 6 363 0 8 271 11 4 410 14 15 64 0 1 64 chain 14941 chr9 138394717 + 20183982 20184172 L1MA8 2339 + 1369 1558 62331 99 1 0 90 chain 85286 chr9 138394717 + 20265319 20266401 MER11B 1079 + 0 1074 20575 264 3 0 404 1 0 104 8 2 105 0 1 169 7 8 17 chain 60785 chr9 138394717 + 20277535 20278241 L1PA5 6144 + 5432 6140 26157 201 0 1 362 0 1 143 chain 6515 chr9 138394717 + 20366782 20366854 L1PA7 6471 + 5669 5741 79288 72 chain 108089 chr9 138394717 + 20370812 20372280 Tigger1 2417 + 462 1944 17312 20 0 1 38 17 19 227 11 13 187 0 3 69 0 3 109 2 0 42 0 2 7 2 0 199 18 21 127 1 0 228 0 3 164 chain 22853 chr9 138394717 + 20452192 20452517 THE1C 375 + 0 342 52574 69 1 15 24 8 10 74 8 7 5 0 2 136 chain 15481 chr9 138394717 + 20498523 20498746 MER30 238 + 0 238 61683 107 14 23 23 2 8 77 chain 69913 chr9 138394717 + 20588819 20589594 L1PA3long 6157 + 5381 6157 24013 442 1 2 332 chain 19866 chr9 138394717 + 20594240 20594479 MER41-int 2638 + 2393 2636 56590 139 0 4 100 chain 18991 chr9 138394717 + 20758741 20758978 L1P1 4361 + 4107 4341 57561 43 1 0 155 1 0 23 2 1 12 chain 27857 chr9 138394717 + 20777820 20778113 AluYd8 298 + 0 293 45098 293 chain 3878 chr9 138394717 + 20859747 20859883 L1MB8 1703 + 1449 1585 92300 26 1 0 4 71 72 34 chain 172210 chr9 138394717 + 20919074 20920973 L1PA3long 6157 + 4255 6157 10988 415 0 3 1484 chain 29959 chr9 138394717 + 20934729 20935137 L1PB1 5432 + 3577 3983 42093 121 12 8 24 7 5 90 0 4 154 chain 183073 chr9 138394717 + 20936679 20938726 L1PA4 6152 + 4081 6143 10433 83 0 9 1724 0 1 234 0 5 6 chain 210523 chr9 138394717 + 21020988 21023366 L1PA5 6144 + 3741 6132 9336 1194 0 4 331 0 6 18 0 2 107 0 1 728 chain 3599 chr9 138394717 + 21052726 21052769 MER5A1 166 + 93 136 94434 43 chain 128923 chr9 138394717 + 21086940 21088619 L1P3 4156 + 15 1718 14161 222 25 24 58 2 1 291 0 1 62 36 50 141 4 0 215 0 1 37 0 1 309 0 1 128 0 5 99 10 17 40 chain 158742 chr9 138394717 + 21127201 21129115 L1PA7 6471 + 4524 6467 11825 50 0 1 76 0 1 10 6 10 264 0 30 123 0 6 631 8 4 20 9 0 717 chain 9902 chr9 138394717 + 21169332 21169453 L1PA6 6164 + 6035 6156 70610 121 chain 10145 chr9 138394717 + 21208819 21208948 L1PA6 6164 + 6035 6162 70117 117 2 0 10 chain 275594 chr9 138394717 + 21219716 21223371 L1PA3long 6157 + 2501 6150 7564 388 11 0 535 0 2 731 0 3 1990 chain 10269 chr9 138394717 + 21223595 21223722 L1PA6 6164 + 6035 6162 69866 127 chain 15151 chr9 138394717 + 21255273 21255462 MER50 708 + 495 684 62093 189 chain 34454 chr9 138394717 + 21264328 21264760 MER57A1 433 + 0 433 38395 276 6 7 150 chain 75290 chr9 138394717 + 21273512 21274370 L1PA5 6144 + 4081 4945 22770 198 0 2 60 0 4 600 chain 84127 chr9 138394717 + 21310860 21311917 MER11C 1089 + 0 1089 20775 225 0 5 37 0 3 49 1 18 249 12 13 176 0 8 291 4 2 13 chain 110674 chr9 138394717 + 21343215 21345519 L1PA10 4194 + 2069 4144 16985 302 18 0 213 8 9 17 4 3 4 0 1 10 18 21 16 1 0 8 6 10 56 1 0 222 2 0 89 251 17 129 0 1 403 1 5 41 1 3 27 2 16 60 1 0 55 0 1 165 0 1 109 1 0 28 0 1 4 6 3 25 chain 48522 chr9 138394717 + 21345851 21346509 L1PA7 6471 + 5811 6470 30111 290 1 3 5 2 0 72 1 4 129 15 14 74 5 6 53 2 0 9 chain 26944 chr9 138394717 + 21354145 21354616 THE1B 368 + 13 368 46348 24 0 5 101 120 0 25 1 0 200 chain 18125 chr9 138394717 + 21413302 21413573 THE1A 353 + 85 353 58541 23 1 0 90 1 0 77 4 0 20 16 19 39 chain 44174 chr9 138394717 + 21433874 21434385 MER9a2 513 + 0 513 32032 356 0 2 155 chain 223490 chr9 138394717 + 21457189 21459753 L1PA6 6164 + 3590 6158 8944 108 1 3 194 0 1 228 0 1 1877 15 15 141 chain 491962 chr9 138394717 + 21536613 21541948 L1PA2 6032 + 3 6030 3371 93 0 688 1480 0 4 3762 chain 21173 chr9 138394717 + 21543861 21544205 THE1B 368 + 0 368 54918 44 23 38 88 1 0 28 35 45 125 chain 27543 chr9 138394717 + 21581189 21581502 AluSq10 312 + 0 312 45524 243 1 0 69 chain 18132 chr9 138394717 + 21699312 21699524 7SLRNA 320 + 18 231 58530 133 0 1 79 chain 67807 chr9 138394717 + 21704892 21705639 L1PA3long 6157 + 5412 6157 24493 73 2 0 672 chain 60629 chr9 138394717 + 21726888 21727655 LTR17 781 + 0 768 26192 172 3 1 154 1 0 23 0 3 55 4 5 355 chain 61434 chr9 138394717 + 21780299 21780975 L1PA5 6144 + 5456 6132 26003 676 chain 7280 chr9 138394717 + 21808750 21808840 MSTB2 466 + 374 464 76729 90 chain 4508 chr9 138394717 + 21845586 21845663 L1PB1 5432 + 3890 3952 88274 12 15 0 50 chain 34146 chr9 138394717 + 21846887 21847326 MLT2A1 477 + 0 477 38604 100 0 1 68 4 1 9 0 1 23 0 1 183 15 53 37 chain 342584 chr9 138394717 + 21847326 21851609 HERVL-int 5654 + 0 5635 6016 63 4 5 166 35 0 324 0 1 4 2 1 723 12 17 114 21 0 71 0 2 182 0 1 50 6 8 264 0 1 406 2 0 468 1 0 195 0 1 435 29 1426 290 0 1 416 chain 32995 chr9 138394717 + 21851617 21852044 MLT2A1 477 + 0 477 39516 169 4 1 9 0 1 23 0 1 181 3 54 38 chain 7813 chr9 138394717 + 21852044 21852220 L1PB1 5432 + 5114 5279 75335 24 12 10 8 2 0 3 2 0 9 3 1 44 26 23 43 chain 20233 chr9 138394717 + 21888748 21889003 L1PBa 3878 + 1127 1386 56100 29 0 3 155 0 1 71 chain 20562 chr9 138394717 + 21894507 21894740 L1PA5 6144 + 5894 6128 55690 107 0 1 126 chain 306341 chr9 138394717 + 21895879 21899378 L1PA5 6144 + 2598 6129 6691 382 1 25 131 0 2 19 1 0 182 0 1 42 0 3 123 1 2 174 0 2 620 0 1 4 1 0 1818 chain 65656 chr9 138394717 + 21899811 21900877 L1PA15 4387 + 3302 4356 25043 475 0 5 31 2 0 17 2 8 7 0 1 45 3 1 16 1 0 22 8 7 72 40 41 54 1 0 21 7 5 53 7 6 19 4 0 8 2 1 38 81 68 6 0 3 24 chain 339016 chr9 138394717 + 21910908 21914792 L1PA5 6144 + 2257 6144 6089 319 0 2 592 1 0 338 1 0 836 0 4 279 1 2 251 0 1 299 6 4 810 1 2 64 2 0 84 chain 28644 chr9 138394717 + 21918069 21918374 AluYa5 310 + 0 306 43879 18 0 1 287 chain 26026 chr9 138394717 + 21938948 21939294 THE1A 353 + 0 353 47680 105 6 5 91 9 17 135 chain 102069 chr9 138394717 + 21959076 21960419 LTR12C 1709 + 0 1709 18057 44 1 8 210 0 1 387 0 485 89 0 4 359 131 0 122 chain 6704 chr9 138394717 + 21960187 21960297 LTR12C 1709 + 1477 1587 64458 110 chain 12908 chr9 138394717 + 21991195 21991414 MER30 238 + 0 238 65237 15 17 16 58 10 33 77 3 0 39 chain 17875 chr9 138394717 + 22066783 22066982 L1PA5 6144 + 5702 5901 58798 199 chain 20554 chr9 138394717 + 22066982 22067226 L1PA5 6144 + 5902 6141 55707 233 5 0 6 chain 9758 chr9 138394717 + 22152151 22152339 MLT1A0 366 + 127 314 70917 78 55 54 55 chain 526774 chr9 138394717 + 22177101 22183145 L1PA5 6144 + 68 6141 1965 26 1 2 605 0 1 1491 0 2 360 5 8 26 0 1 137 1 0 6 0 10 34 0 4 43 1 15 337 1 0 233 0 1 4 2 1 236 1 0 495 4 0 821 0 1 718 1 0 455 chain 267916 chr9 138394717 + 22230669 22234925 L1PA11 4918 + 801 4567 7765 51 0 13 57 431 11 496 0 1 40 11 9 7 0 2 322 0 1 87 2 3 113 1 4 4 1 0 179 0 1 90 5 10 148 0 1 58 0 12 16 14 0 5 1 0 242 11 8 23 79 7 309 0 1 38 4 6 142 0 2 12 1 0 32 1 0 119 0 3 50 1 0 257 6 6 225 9 0 161 0 5 65 1 3 66 1 0 7 7 2 60 2 1 13 2 0 66 3 1 15 1 0 19 4 0 9 8 3 15 18 19 13 chain 3204 chr9 138394717 + 22322770 22322804 L1PA4 6152 - 463 497 96134 34 chain 24641 chr9 138394717 + 22322804 22323092 L1PA4 6152 + 5862 6152 49812 282 0 2 6 chain 54324 chr9 138394717 + 22339312 22339909 L1PA4 6152 + 5370 5967 28115 597 chain 21756 chr9 138394717 + 22372942 22373325 L1PB1 5432 + 4919 5279 54161 12 14 15 156 1 0 14 13 0 22 1 0 6 1 0 12 2 0 3 2 0 9 7 5 47 2 1 9 7 6 43 chain 91422 chr9 138394717 + 22433697 22434972 LTR12D 1347 + 0 1347 19432 193 70 88 15 0 36 204 0 31 18 6 5 104 0 17 311 27 0 27 4 3 29 2 1 265 chain 54480 chr9 138394717 + 22440856 22441640 LTR12D 1347 + 0 923 28058 203 82 80 13 0 36 180 8 79 61 2 18 18 0 18 217 chain 19782 chr9 138394717 + 22441640 22441864 LTR12D 1347 + 1123 1347 56697 224 chain 22516 chr9 138394717 + 22482350 22482601 L1PA4 6152 + 5901 6152 53102 251 chain 106460 chr9 138394717 + 22533847 22535257 L1PA8 5853 + 4446 5847 17496 564 2 0 87 8 7 235 1 2 67 7 7 149 2 1 43 2 0 62 23 21 51 1 0 18 2 1 86 chain 118700 chr9 138394717 + 22569612 22570985 L1HS 6032 + 1016 2389 15771 1373 chain 18715 chr9 138394717 + 22571804 22572146 THE1B 368 + 0 368 57882 44 8 23 84 65 0 9 7 83 125 chain 118525 chr9 138394717 + 22572172 22573730 THE1B-int 1605 + 28 1605 15802 380 5 6 4 1 0 11 12 38 226 27 19 593 0 1 299 chain 142085 chr9 138394717 + 22631404 22633332 L1PA8 5853 + 3917 5853 12927 74 0 2 121 0 1 321 0 12 316 4 1 10 11 13 94 3 1 74 0 1 46 7 5 144 2 3 144 4 1 64 0 1 198 1 0 18 0 4 19 5 3 59 12 12 12 1 0 49 2 1 19 14 13 80 chain 63688 chr9 138394717 + 22687606 22688425 LTR12 884 + 0 884 25480 25 1 0 30 0 41 210 1 6 7 0 25 34 2 0 299 1 0 91 6 4 112 chain 106278 chr9 138394717 + 22727136 22728338 L1P1 4361 + 1184 2386 17530 1202 chain 68211 chr9 138394717 + 22743087 22743934 L1PA7 6471 + 5621 6461 24401 81 1 0 114 0 1 198 23 15 103 1 2 326 chain 128503 chr9 138394717 + 22760809 22762229 L1PA5 6144 + 4715 6140 14220 1411 0 5 9 chain 134725 chr9 138394717 + 22787828 22789503 L1PA7 6471 + 4771 6463 13565 52 0 9 787 1 4 371 4 0 9 0 1 65 0 8 220 25 25 141 chain 15448 chr9 138394717 + 22823029 22823202 HERV17-int 4347 + 4173 4346 61726 173 chain 26842 chr9 138394717 + 22823514 22823839 LTR17 781 + 0 325 46483 325 chain 250432 chr9 138394717 + 22830960 22834616 HERVL-int 5654 + 0 3329 8221 101 1 2 6 1 0 180 5 6 70 6 7 14 1 3 197 0 1 60 0 1 5 1 0 320 5 4 267 0 1 4 5 4 35 0 1 184 1 0 244 350 0 221 1 0 4 0 1 182 0 1 251 4 5 121 0 1 147 0 1 4 1 0 61 0 4 6 1 10 41 9 8 59 17 18 55 0 1 53 5 6 91 0 1 259 chain 3402 chr9 138394717 + 22848856 22848892 LTR35B 538 + 92 128 96052 36 chain 43353 chr9 138394717 + 22880162 22880764 LTR66 600 + 0 579 32536 48 0 4 223 0 1 39 13 14 76 1 7 62 34 0 14 2 1 90 chain 129113 chr9 138394717 + 22885791 22887276 L1PA5 6144 + 4647 6140 14132 73 0 7 325 0 1 640 5 5 287 12 12 143 chain 65047 chr9 138394717 + 22951479 22952232 L1PA3long 6157 + 4677 5398 25180 602 32 0 119 chain 87498 chr9 138394717 + 22962173 22963181 L1PA5 6144 + 5112 6120 20134 258 0 1 263 1 0 347 1 6 11 5 0 122 chain 10870 chr9 138394717 + 23017288 23017496 L1MA3 4352 + 4019 4209 68739 67 58 40 83 chain 56807 chr9 138394717 + 23068106 23068853 L1PA8 5853 + 5113 5853 27322 9 0 1 66 0 3 269 4 0 103 1 0 45 2 0 70 1 0 14 7 6 41 2 1 19 1 0 93 chain 192738 chr9 138394717 + 23084715 23087079 L1PA7 6471 + 4078 6460 9984 49 7 8 146 0 2 672 1 0 634 10 14 27 0 1 7 7 8 63 6 8 238 0 7 361 0 1 136 chain 533420 chr9 138394717 + 23105114 23111239 L1PA4 6152 + 2 6152 1685 125 0 14 187 0 3 395 1 2 530 2 0 56 18 21 309 0 1 301 1 0 56 0 1 381 0 4 2900 0 1 19 0 1 438 0 3 5 3 0 143 1 0 254 chain 52866 chr9 138394717 + 23130998 23131590 L1PA3long 6157 + 5565 6157 28615 227 1 0 252 0 1 112 chain 90489 chr9 138394717 + 23224668 23226123 L1P1 4361 + 2891 4038 19593 276 0 1 9 1 0 198 0 1 58 324 0 69 2 0 83 0 16 309 5 6 121 chain 441650 chr9 138394717 + 23247438 23253031 L1PA7 6471 + 0 6468 4542 23 0 4 384 0 1 37 7 8 49 9 10 5 1 0 95 1 0 4 8 6 22 2 1 1395 0 967 440 1 6 92 8 12 16 0 1 664 0 2 619 0 1 86 2 0 639 10 11 14 1 0 98 1 0 432 85 0 215 27 6 75 5 7 21 chain 29491 chr9 138394717 + 23328694 23329018 AluYb8 318 + 0 318 42620 126 6 0 192 chain 82728 chr9 138394717 + 23336537 23337454 L1PA3long 6157 + 5240 6157 21081 917 chain 16533 chr9 138394717 + 23385179 23385402 L1MA2 4263 + 3808 4029 60327 150 1 0 8 1 0 63 chain 375095 chr9 138394717 + 23395205 23400347 L1PA4 6152 + 1023 6151 5568 554 25 0 743 1 0 850 0 1 249 1 0 262 0 1 248 2 5 248 1 4 166 0 4 548 0 1 1244 chain 9143 chr9 138394717 + 23415204 23415314 Tigger3c 601 + 418 528 72251 110 chain 3085 chr9 138394717 + 23452688 23452723 LTR12C 1709 + 683 718 98913 35 chain 24081 chr9 138394717 + 23507112 23507434 THE1A 353 + 0 353 50677 103 8 7 91 2 34 118 chain 117116 chr9 138394717 + 23507434 23508987 THE1A-int 1579 + 0 1574 16034 12 2 4 134 3 0 19 24 24 66 0 1 6 0 2 225 1 2 81 15 31 261 13 13 247 0 1 331 0 1 113 chain 28755 chr9 138394717 + 23508992 23509346 THE1A 353 + 0 353 43698 110 1 0 243 chain 150267 chr9 138394717 + 23519074 23520846 L1PA6 6164 + 4402 6162 12329 36 5 0 944 0 1 292 10 5 57 0 2 252 1 0 5 0 1 159 5 0 6 chain 67975 chr9 138394717 + 23548057 23548819 L1PA4 6152 + 5379 6141 24459 762 chain 93594 chr9 138394717 + 23626327 23627440 L1PA7 6471 + 5335 6454 19096 234 1 2 43 0 3 584 0 1 107 1 2 143 chain 9074 chr9 138394717 + 23670592 23670701 MER107 203 + 0 108 72395 20 1 0 88 chain 4121 chr9 138394717 + 23677468 23677515 MSTD 398 + 351 398 90643 47 chain 20989 chr9 138394717 + 23716077 23716313 L1PA5 6144 + 5896 6132 55137 236 chain 40314 chr9 138394717 + 23723121 23723570 L1PA3long 6157 + 5697 6153 34438 304 0 7 145 chain 4945 chr9 138394717 + 23754820 23755093 MER34A 573 + 98 392 85909 46 199 220 28 chain 4041 chr9 138394717 + 23759010 23759064 L1MA6 2487 + 2124 2178 91145 42 0 1 4 1 0 7 chain 123097 chr9 138394717 + 23909011 23910520 L1PA5 6144 + 4636 6125 15005 63 25 0 598 0 4 733 0 1 90 chain 3097 chr9 138394717 + 23911749 23911791 MER21B 843 + 53 93 98817 31 2 0 9 chain 7890 chr9 138394717 + 23928521 23928618 L1MA3 4352 + 3855 3952 75148 97 chain 38692 chr9 138394717 + 23937781 23938219 L1PA2 6032 + 5587 6032 35565 279 5 0 7 0 5 134 0 7 13 chain 19158 chr9 138394717 + 23959365 23959700 THE1B 368 + 8 368 57392 36 0 15 113 2 1 25 43 53 25 18 19 73 chain 514391 chr9 138394717 + 23991702 23997834 L1PA6 6164 + 1 6158 2549 138 1 2 80 0 1 340 2 0 410 0 1 60 0 2 650 0 1 647 0 1 848 1 3 4 0 1 507 1 2 667 0 4 142 0 4 97 2 1 190 9 1 114 0 5 393 0 6 389 1 6 244 5 15 62 9 0 119 chain 137928 chr9 138394717 + 24053664 24055370 L1PA7 6471 + 4757 6465 13272 408 7 9 175 0 1 197 0 1 73 1 0 398 0 3 61 6 7 364 5 0 11 chain 153915 chr9 138394717 + 24067358 24069085 L1PA3long 6157 + 4433 6157 12115 800 1 0 591 2 1 183 2 3 141 2 0 5 chain 111672 chr9 138394717 + 24080234 24081801 THE1A-int 1579 + 0 1579 16852 97 1 0 131 3 6 310 19 21 71 20 34 7 5 0 284 5 6 161 23 22 154 12 11 213 4 5 28 1 0 18 chain 10026 chr9 138394717 + 24089481 24089928 MLT1C 463 + 59 463 70367 46 1 2 17 292 248 91 chain 15932 chr9 138394717 + 24094924 24095093 L1PA2 6032 + 5860 6029 61115 169 chain 115667 chr9 138394717 + 24134904 24136315 LTR12C 1709 + 0 1709 16295 266 0 1 20 5 22 114 1 2 48 8 9 168 0 278 184 1 0 4 4 2 106 0 4 394 6 5 82 chain 46614 chr9 138394717 + 24174318 24174845 L1PA3long 6157 + 5628 6156 30809 239 0 1 288 chain 102965 chr9 138394717 + 24186799 24187978 L1PA5 6144 + 4953 6139 17955 341 1 0 699 1 9 137 chain 284471 chr9 138394717 + 24280099 24283494 L1PA5 6144 + 2757 6138 7302 46 27 0 354 2 1 100 0 1 36 0 1 518 0 5 756 0 1 52 0 5 658 1 5 147 8 3 540 4 5 5 0 1 141 chain 103289 chr9 138394717 + 24338254 24339391 L1PA3long 6157 + 4250 5388 17918 987 0 1 150 chain 74848 chr9 138394717 + 24347213 24348093 L1PA7 6471 + 5579 6464 22884 38 1 3 97 2 5 742 chain 126647 chr9 138394717 + 24391939 24393887 L1PA7 6471 + 4862 6470 14459 415 0 1 19 0 1 82 9 19 218 7 11 46 356 0 123 0 1 44 4 3 625 chain 343526 chr9 138394717 + 24408488 24412668 L1PA5 6144 + 0 4211 6002 120 0 14 87 1 0 357 0 1 229 1 23 188 10 11 4 1 0 135 9 0 954 0 3 436 0 4 183 10 9 547 6 0 133 2 0 33 0 3 28 0 1 439 0 1 217 0 1 50 chain 3160 chr9 138394717 + 24528837 24528875 MER3 215 - 0 38 98276 38 chain 34536 chr9 138394717 + 24536140 24536786 L1PB1 5432 + 4819 5430 38333 190 1 0 68 0 6 20 1 2 9 12 11 9 1 0 12 1 0 12 20 14 40 1 0 8 2 1 15 1 0 44 1 0 16 24 12 19 2 0 5 10 9 5 2 0 19 6 5 21 1 0 13 1 0 10 1 0 10 7 0 6 chain 4124 chr9 138394717 + 24588128 24588179 Tigger3c 601 + 23 74 90628 51 chain 28459 chr9 138394717 + 24676500 24676845 L1PA7 6471 + 6121 6469 44182 187 1 2 146 0 2 11 chain 3699 chr9 138394717 + 24710695 24710736 LTR37A 408 + 347 388 93614 41 chain 57938 chr9 138394717 + 24728754 24729476 MER4E 760 + 0 752 26985 170 7 0 167 1 41 68 1 0 55 1 0 232 1 0 19 chain 22177 chr9 138394717 + 24744620 24744960 L1PA8 5853 + 5515 5847 53597 49 1 0 44 2 0 73 1 0 6 25 22 31 2 1 19 1 0 48 0 1 38 chain 301675 chr9 138394717 + 24789049 24793228 L1PA7 6471 + 2577 6466 6786 7 2 0 57 9 1 408 4 0 314 1 0 65 0 3 7 13 10 35 1 2 51 7 11 30 0 5 653 1 0 181 0 2 103 3 5 130 0 2 159 0 4 123 9 4 28 0 2 5 10 8 311 313 0 266 0 1 40 4 10 757 6 23 66 chain 28717 chr9 138394717 + 24791783 24792089 AluYb8 318 + 1 307 43764 306 chain 247629 chr9 138394717 + 24858498 24861378 L1P1 4361 + 682 3573 8292 45 2 3 425 0 3 98 0 1 188 0 4 378 1 2 623 0 1 1120 chain 486482 chr9 138394717 + 24888464 24895143 L1PA7 6471 + 15 6459 3503 226 0 1 168 61 32 77 7 8 50 13 10 665 26 45 512 0 1 292 0 2 151 0 4 277 1 2 41 6 8 52 7 8 17 0 1 224 0 4 516 1 5 6 4 0 124 0 4 22 0 4 6 0 4 150 1 19 83 3 0 172 0 1 197 2 1 28 5 12 32 0 3 86 0 1 89 0 8 57 0 4 140 1 5 63 1 2 356 0 1 461 0 4 43 0 4 8 1 4 55 5 7 117 311 1 338 0 1 259 6 5 16 1 2 40 chain 73956 chr9 138394717 + 24919778 24920604 L1PA3long 6157 + 5317 6144 23105 690 1 2 135 chain 10809 chr9 138394717 + 24921383 24921658 L1PB 1623 + 1338 1573 68839 12 13 7 93 6 4 29 2 1 5 3 0 13 4 0 12 3 0 13 48 27 19 chain 7537 chr9 138394717 + 24947207 24947770 MLT1C-int 1263 + 22 489 76038 38 69 70 30 329 230 36 27 29 34 chain 123152 chr9 138394717 + 24989214 24991290 L1PB1 5432 + 2694 5322 14999 9 0 1 4 1 0 134 6 5 83 0 4 40 7 1 213 1 0 277 0 4 17 2 869 195 1 0 71 0 1 175 2 1 190 31 28 71 306 20 7 1 0 24 1 0 8 1 0 12 15 9 53 2 1 16 1 0 38 36 22 25 chain 3960 chr9 138394717 + 25016372 25016534 MLT1A0 366 + 125 290 91696 27 102 105 33 chain 521109 chr9 138394717 + 25102006 25108074 L1PA5 6144 + 5 6077 2221 219 1 0 249 5 1 251 1 0 1833 0 4 1175 1 0 341 6 12 1205 1 5 431 10 6 235 3 4 101 chain 5581 chr9 138394717 + 25140226 25140337 L1MA5 2750 + 2552 2661 82891 10 1 0 49 5 6 12 10 9 8 1 0 15 chain 22644 chr9 138394717 + 25150228 25150511 L1PA7 6471 + 6184 6470 52919 271 1 4 11 chain 119450 chr9 138394717 + 25168459 25169922 L1P3 4156 + 2665 4136 15622 221 0 4 371 0 1 226 1 0 37 0 1 77 0 1 224 2 0 56 2 9 214 2 0 7 2 1 21 chain 35390 chr9 138394717 + 25232719 25233121 L1PA5 6144 + 5739 6141 37776 402 chain 66237 chr9 138394717 + 25247472 25248514 LTR12D 1347 + 405 1347 24898 64 5 0 39 37 0 28 1 32 27 0 1 97 97 13 314 33 28 34 1 0 265 chain 1807 chr9 138394717 + 25247586 25247617 LTR12D 1347 + 436 467 61952 31 chain 4546 chr9 138394717 + 25247770 25247848 LTR12D 1347 + 574 652 61952 78 chain 85408 chr9 138394717 + 25256695 25257634 L1PA3long 6157 + 5218 6156 20548 472 1 0 466 chain 30258 chr9 138394717 + 25264860 25265555 MLT2A1 477 + 2 477 41799 136 15 16 14 1 5 37 22 18 156 4 1 10 1 0 6 6 0 8 200 0 10 10 0 39 1 0 19 chain 22400 chr9 138394717 + 25288175 25288591 LTR7 482 + 2 482 53272 29 44 133 16 51 0 37 3 0 6 9 41 21 3 0 197 chain 273277 chr9 138394717 + 25288593 25291928 HERVH-int 3825 + 0 3825 7627 225 0 468 4 1 0 82 1 0 901 9 36 290 0 4 267 0 1 30 1 2 27 7 9 198 0 1 4 1 0 212 1 0 209 12 0 103 5 6 329 13 14 403 chain 26252 chr9 138394717 + 25293743 25294101 LTR7 482 + 0 482 47348 70 5 94 18 0 3 39 8 40 20 2 0 106 0 2 90 chain 58099 chr9 138394717 + 25473285 25474051 MER4E1 777 + 0 769 26934 17 6 0 41 0 1 120 0 1 186 1 0 176 1 9 131 28 28 59 chain 76468 chr9 138394717 + 25484570 25485395 L1PA3long 6157 + 5332 6157 22446 825 chain 3504 chr9 138394717 + 25543700 25543740 MADE1 96 + 56 96 95209 40 chain 10397 chr9 138394717 + 25590831 25591010 MER30 238 + 34 238 69628 71 4 0 10 5 28 55 13 19 21 chain 29949 chr9 138394717 + 25591420 25591779 L1PA6 6164 + 5790 6154 42099 41 0 1 277 6 10 35 chain 18863 chr9 138394717 + 25609195 25609426 AluSg7 307 + 16 248 57695 112 1 2 118 chain 64388 chr9 138394717 + 25626485 25627303 HERVL-int 5654 + 4817 5649 25327 84 0 3 98 12 13 42 0 1 339 0 2 29 1 8 213 chain 32012 chr9 138394717 + 25627308 25627729 MLT2A1 477 + 0 399 40336 169 4 1 92 0 1 122 20 0 14 chain 15156 chr9 138394717 + 25652983 25653149 L1P2 5180 + 1892 2058 62086 166 chain 12357 chr9 138394717 + 25657158 25657396 LTR8 732 + 487 725 66221 40 10 11 16 26 28 22 4 0 51 1 0 30 4 6 34 chain 26539 chr9 138394717 + 25668928 25669329 LTR7 482 + 0 482 46910 69 12 50 105 24 26 13 1 32 19 0 10 158 chain 288433 chr9 138394717 + 25669332 25672956 HERVH-int 3825 + 1 3825 7180 250 0 5 77 2 1 46 0 2 91 0 4 8 2 0 47 1 0 13 0 1 24 1 0 10 1 0 24 87 0 14 1 38 40 1 22 5 0 1 5 1 0 50 1 0 1000 0 1 312 0 5 153 1 0 38 1 2 183 4 5 23 0 1 158 0 3 407 12 14 36 1 211 63 1 0 104 0 2 325 chain 5240 chr9 138394717 + 25669929 25669987 HERVH-int 3825 + 488 546 84055 58 chain 115359 chr9 138394717 + 25732147 25733496 L1P1 4361 + 1 1350 16335 304 0 2 130 1 0 115 15 13 16 0 1 768 chain 2847 chr9 138394717 + 25744413 25744443 L1P1 4361 + 2681 2711 101255 30 chain 12766 chr9 138394717 + 25820079 25820236 Tigger3a 397 + 180 337 65493 157 chain 32395 chr9 138394717 + 25847554 25848002 MER4A1 472 + 0 472 40042 15 4 7 8 1 0 145 0 1 47 21 42 207 chain 184808 chr9 138394717 + 25851501 25854087 MER4-int 2692 + 7 2690 10349 4 1 0 25 2 0 53 0 1 27 0 1 9 0 1 37 1 0 127 1 2 259 6 7 128 0 3 34 0 1 166 9 3 23 0 1 139 13 15 15 7 13 145 0 1 78 21 9 85 1 0 23 1 0 4 0 1 30 3 8 29 4 1 246 3 2 17 1 0 102 4 7 380 3 0 6 13 17 38 6 7 122 4 3 53 0 93 72 0 4 6 chain 31886 chr9 138394717 + 25854109 25854537 MER4A1 472 + 9 472 40428 5 0 3 31 0 1 50 0 2 36 0 8 74 16 37 216 chain 4945 chr9 138394717 + 25940623 25940677 MLT2A2 560 + 506 560 85911 54 chain 499037 chr9 138394717 + 25982529 25988729 L1PA6 6164 + 0 6160 3161 78 1 3 87 71 28 40 0 2 279 0 2 48 1 0 285 0 2 106 8 9 117 0 3 91 0 3 5 4 1 37 9 13 214 0 1 869 10 2 273 0 1 247 0 1 142 0 1 194 1 2 32 1 2 478 4 0 233 0 1 11 5 11 109 14 0 130 0 1 4 1 0 103 0 2 340 4 0 30 0 1 1039 1 0 31 0 1 86 0 1 252 0 1 75 chain 340409 chr9 138394717 + 26044753 26048684 L1PA4 6152 + 2038 5971 6059 865 3 0 19 0 1 125 8 7 59 8 9 37 6 5 1183 0 4 283 1 0 29 0 1 917 0 1 388 chain 447129 chr9 138394717 + 26105097 26110710 HERVL-int 5654 + 0 5654 4430 59 0 1 265 0 2 322 2 0 46 0 1 6 3 4 441 8 0 331 1 18 760 1 0 258 1 2 351 1 0 4 0 1 138 12 15 66 13 8 27 0 1 439 2 0 5 0 2 146 0 1 16 0 5 420 1 0 736 10 7 374 0 13 39 0 1 30 0 3 134 0 2 50 0 5 22 0 3 67 0 1 6 chain 5103 chr9 138394717 + 26131613 26131679 MER33 330 + 51 117 85149 66 chain 12632 chr9 138394717 + 26134042 26134205 Tigger3a 397 + 143 305 65749 4 1 0 158 chain 541137 chr9 138394717 + 26249772 26255793 L1PA3long 6157 + 0 6157 1265 153 0 1 618 3 132 141 0 1 1650 0 1 1653 0 4 1803 chain 518101 chr9 138394717 + 26277106 26283545 L1PA7 6471 + 0 6467 2362 401 0 1 104 1 4 75 8 6 447 17 3 169 0 4 410 1 2 5 1 0 302 1 0 5 0 1 96 2 1 288 1 0 27 0 2 71 0 3 211 0 1 101 0 3 146 0 4 193 4 2 163 1 0 253 0 1 44 7 11 117 0 3 417 1 2 856 1 0 608 0 1 330 0 2 260 0 17 143 1 0 5 1 2 144 chain 48192 chr9 138394717 + 26348864 26349568 LTR30 714 + 0 714 30221 37 0 1 211 0 5 146 0 4 39 7 18 30 15 7 126 15 11 11 19 21 25 1 0 22 chain 283014 chr9 138394717 + 26349568 26353459 L1PB1 5432 + 1580 5418 7340 127 1 2 432 0 2 48 0 4 297 1 0 426 1 2 285 0 1 150 0 6 115 0 4 210 18 8 31 1 3 652 0 3 154 14 4 82 5 0 183 29 23 160 5 3 28 28 28 50 5 2 11 59 44 8 2 0 52 19 17 43 1 0 9 40 28 10 8 5 14 2 0 24 1 0 21 1 0 13 1 0 14 chain 43530 chr9 138394717 + 26378163 26378681 L1PA5 6144 + 5631 6143 32432 56 7 1 455 chain 234356 chr9 138394717 + 26429426 26432842 L1PB1 5432 + 2042 5422 8629 226 0 3 153 1 7 6 6 0 63 1 0 218 3 0 110 16 14 102 0 1 48 1 0 4 11 11 153 1 6 44 2 0 262 1 6 7 0 1 21 7 8 66 1 2 120 1 2 4 1 0 19 2 4 259 1 0 74 1 0 47 1 0 30 2 1 150 0 2 325 15 16 20 0 4 135 9 12 295 46 20 11 1 0 10 1 0 14 5 1 9 2 0 13 0 3 35 21 19 43 1 0 15 3 0 13 7 0 17 3 1 5 1 0 13 3 1 24 1 0 22 14 12 18 chain 377284 chr9 138394717 + 26445522 26449701 L1PA3long 6157 + 1970 6157 5528 352 5 3 374 1 6 2261 0 1 146 1 2 73 0 1 818 0 1 36 0 1 112 chain 142164 chr9 138394717 + 26480862 26482517 L1PA6 6164 + 3044 4705 12923 141 1 0 4 0 1 437 0 4 494 1 0 39 0 3 538 chain 104427 chr9 138394717 + 26491981 26493979 SVA_B 1603 + 51 1594 17767 15 0 5 23 43 32 75 0 1 302 37 0 71 195 0 174 80 1 33 0 3 20 4 7 10 0 3 37 0 3 20 28 113 14 73 0 55 0 3 13 150 0 16 20 4 490 chain 56598 chr9 138394717 + 26547240 26547934 L1PA7 6471 + 5775 6468 27389 638 1 13 7 9 0 28 4 0 7 chain 5211 chr9 138394717 + 26555823 26555890 L1MB5 1630 + 1056 1122 84626 25 1 0 41 chain 8906 chr9 138394717 + 26558205 26558321 L1PA7 6471 + 5332 5449 72772 28 4 5 84 chain 27547 chr9 138394717 + 26558321 26558653 L1PA7 6471 + 5450 5785 45515 164 0 3 168 chain 57347 chr9 138394717 + 26558661 26559322 L1PA7 6471 + 5794 6455 27145 661 chain 190336 chr9 138394717 + 26586379 26588506 L1P1 4361 + 2126 4252 10097 2025 1 0 101 chain 5378 chr9 138394717 + 26608828 26609070 MER68B 564 + 267 512 83811 34 161 164 47 chain 141168 chr9 138394717 + 26621346 26623063 L1PA7 6471 + 4727 6470 13014 229 6 7 96 0 5 558 0 2 76 0 2 83 1 2 184 0 7 261 3 10 14 0 1 56 0 1 24 1 0 125 chain 125309 chr9 138394717 + 26663624 26665225 SVA_B 1603 + 1 1603 14653 6 1 0 6 1 0 23 24 8 22 0 5 99 0 2 349 0 40 170 77 0 90 0 3 81 0 43 39 0 3 215 0 3 389 3 0 6 chain 13123 chr9 138394717 + 26747037 26747584 MER44A 345 + 68 323 64889 28 1 0 4 0 5 21 307 0 47 1 8 23 8 13 20 22 0 11 0 21 54 chain 116294 chr9 138394717 + 26777726 26779038 L1PA5 6144 + 4831 6140 16169 1137 7 5 18 1 0 149 chain 20985 chr9 138394717 + 26779573 26779906 L1PA14 3548 + 3121 3456 55145 10 2 0 6 1 0 56 0 16 9 2 1 113 1 0 9 6 2 36 4 2 12 1 0 3 1 0 17 3 2 41 chain 45015 chr9 138394717 + 26811648 26812406 L1PA17 2846 + 1930 2693 31576 302 98 101 180 1 4 16 1 0 30 16 19 18 1 0 36 19 17 40 chain 58298 chr9 138394717 + 26830185 26830923 LTR12 884 + 0 869 26865 105 1 0 147 0 91 35 2 0 31 10 20 300 0 33 107 chain 256750 chr9 138394717 + 26834834 26837767 L1PA5 6144 + 2782 6142 8067 130 1 22 317 0 5 426 2 0 125 0 1 122 1 2 462 0 8 73 0 3 20 0 1 732 3 0 60 0 4 24 0 393 271 16 15 137 4 0 7 chain 8370 chr9 138394717 + 26877164 26877308 Tigger4b 360 + 168 317 73974 23 18 17 43 0 1 14 0 2 35 1 4 10 chain 8778 chr9 138394717 + 26895241 26895377 MLT1B 390 + 28 171 73042 26 0 11 45 1 0 5 0 1 18 1 0 29 3 0 8 chain 4737 chr9 138394717 + 26939436 26939494 L1M4c 1769 + 1588 1645 87031 46 1 0 11 chain 140428 chr9 138394717 + 27025482 27027398 L1PBa 3878 + 1164 3117 13063 7 2 0 39 0 2 169 0 4 76 1 5 139 0 3 6 2 0 3 2 0 6 1 0 95 1 2 131 0 1 51 0 2 5 4 7 153 1 0 45 0 8 203 0 2 335 1 0 44 6 11 158 16 20 62 0 3 69 7 4 14 0 4 50 0 3 12 chain 19800 chr9 138394717 + 27050668 27050888 L1PA5 6144 + 5917 6137 56676 220 chain 9787 chr9 138394717 + 27072362 27072480 THE1B-int 1605 + 1481 1600 70852 114 0 1 4 chain 5046 chr9 138394717 + 27073087 27073147 THE1B 368 + 295 356 85439 11 0 1 49 chain 3452 chr9 138394717 + 27077457 27077496 MSTA 426 + 387 426 95631 39 chain 3771 chr9 138394717 + 27082863 27082909 MADE1 96 + 50 96 93055 46 chain 111356 chr9 138394717 + 27092472 27093900 LTR12C 1709 + 0 1708 16896 256 37 37 4 0 1 40 0 43 37 0 5 4 5 0 235 0 120 55 1 0 78 0 2 195 1 0 8 2 0 95 0 17 164 0 102 115 13 12 83 chain 5518 chr9 138394717 + 27099246 27099308 L1PA8 5853 + 5791 5853 83166 62 chain 22051 chr9 138394717 + 27219264 27219602 L1PA8 5853 + 5476 5798 53764 45 5 0 39 1 0 50 2 0 68 2 1 9 13 12 40 2 1 19 1 0 20 4 0 18 chain 489091 chr9 138394717 + 27220507 27226733 L1PA7 6471 + 0 6469 3441 156 0 15 38 1 2 10 0 9 176 1 2 98 0 15 72 5 0 395 13 8 36 8 7 45 6 21 189 0 23 125 0 3 131 0 1 139 5 13 91 0 19 160 1 0 163 0 1 65 0 1 191 2 0 39 0 94 80 2 0 45 0 2 72 4 0 84 2 0 9 17 19 166 4 9 40 1 0 4 0 1 16 7 11 392 2 0 34 0 1 6 0 4 30 0 3 19 6 7 166 6 5 31 0 1 127 5 6 65 0 1 204 0 2 22 0 1 648 4 22 394 0 1 23 11 13 275 0 3 83 1 4 591 0 6 14 0 1 153 chain 31860 chr9 138394717 + 27230537 27230897 L1PA7 6471 + 4905 5269 40451 290 0 4 70 chain 96118 chr9 138394717 + 27230897 27232075 L1PA7 6471 + 5275 6461 18761 339 0 4 471 2 1 185 46 51 135 chain 544496 chr9 138394717 + 27239370 27245515 L1PA4 6152 + 0 6143 1056 1716 1 0 1461 1 0 1334 1 0 790 1 0 59 1 2 641 0 1 139 chain 498697 chr9 138394717 + 27251185 27257691 L1PA7 6471 + 0 6461 3171 179 26 25 163 4 8 37 15 0 234 5 6 7 1 0 141 5 6 131 5 15 325 12 16 22 4 0 124 0 46 146 2 0 98 5 14 130 0 2 304 41 1 452 27 0 271 0 2 157 13 38 198 11 2 68 8 7 129 1 0 12 6 9 12 7 11 30 0 5 19 0 4 6 2 0 360 0 1 374 0 3 296 88 0 337 1 0 96 0 1 116 0 4 81 1 0 314 0 1 29 0 5 489 0 13 329 chain 89219 chr9 138394717 + 27342427 27343491 SVA_B 1603 + 0 1603 19821 9 31 0 13 0 26 21 14 1 413 0 551 134 0 6 429 chain 3304 chr9 138394717 + 27348696 27348738 MLT1F1 559 + 74 116 96980 42 chain 7054 chr9 138394717 + 27370641 27370735 MLT1A0 366 + 256 349 77425 82 1 0 11 chain 196372 chr9 138394717 + 27418115 27420922 L1PB1 5432 + 2738 5411 9834 80 1 0 7 15 17 93 5 9 120 2 1 120 0 3 242 5 38 134 3 1 133 2 1 244 0 1 8 1 0 31 0 1 126 0 1 259 0 1 219 3 0 487 141 1 22 1 0 9 27 20 50 5 4 16 1 0 44 87 69 20 1 0 21 1 0 13 1 0 7 chain 9412 chr9 138394717 + 27456713 27456883 MER3 215 + 5 169 71674 21 38 32 111 chain 78073 chr9 138394717 + 27493189 27494542 MER11C 1089 + 0 1069 22079 164 299 0 83 0 9 57 0 4 215 70 67 91 1 5 4 1 0 38 0 1 127 0 1 54 1 0 144 0 1 4 chain 111691 chr9 138394717 + 27500353 27501663 L1PA6 6164 + 4759 6068 16849 645 4 2 419 0 1 177 7 0 13 0 7 45 chain 56538 chr9 138394717 + 27577420 27578039 L1PA3long 6157 + 5523 6144 27415 174 0 1 309 0 1 136 chain 33232 chr9 138394717 + 27637122 27637578 MLT2A1 477 + 0 477 39319 168 15 13 23 0 1 197 12 34 41 chain 465170 chr9 138394717 + 27637578 27643193 HERVL-int 5654 + 0 5654 3987 98 0 1 103 3 14 339 5 4 25 1 2 47 4 17 422 0 1 51 1 0 55 4 0 9 0 4 485 0 6 228 0 1 1883 6 7 111 0 1 4 6 5 657 0 1 364 0 1 420 1 5 169 5 1 65 0 4 44 chain 32745 chr9 138394717 + 27643195 27643901 MLT2A1 477 + 2 477 39720 166 9 6 7 0 1 5 0 1 6 1 0 9 0 1 73 1 0 4 0 1 90 1 0 28 258 29 48 chain 476998 chr9 138394717 + 27644982 27651682 L1PA8A 6298 + 41 6286 3696 15 1 0 12 20 9 17 10 7 18 51 39 11 2 1 5 1 0 12 2 0 17 8 5 11 16 13 11 20 14 8 2 0 27 21 15 22 8 0 78 2 0 14 1 0 11 4 2 64 13 12 297 4 0 129 2 1 105 2 3 89 0 1 4 10 9 33 7 7 41 1 0 209 0 3 314 4 0 442 0 6 43 0 11 100 1 0 276 2 0 241 308 10 147 0 2 131 0 1 196 5 4 332 16 0 20 0 2 39 4 11 107 1 2 69 0 12 395 0 1 33 0 2 681 111 0 1214 chain 58778 chr9 138394717 + 27676063 27676793 LTR12 884 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280 0 1 12 0 4 686 9 8 146 chain 73122 chr9 138394717 + 28097044 28097845 L1PA3long 6157 + 5356 6157 23294 801 chain 183909 chr9 138394717 + 28108965 28111402 L1PA8 5853 + 3413 5853 10390 364 4 5 377 0 3 105 0 1 66 3 0 422 0 1 129 5 4 113 5 10 53 21 24 103 17 17 354 1 0 43 3 1 71 1 0 14 2 0 6 13 14 21 31 29 90 chain 20727 chr9 138394717 + 28149315 28150185 SVA_A 1864 + 542 979 55460 30 8 7 28 54 11 31 48 5 30 42 0 38 16 13 25 48 7 28 58 10 34 8 5 32 3 0 10 121 0 23 9 6 31 9 6 15 79 0 12 chain 1166 chr9 138394717 + 28149475 28149509 SVA_A 1864 + 729 763 62796 34 chain 131169 chr9 138394717 + 28181835 28183397 L1PA8A 6298 + 4702 6273 13908 120 1 0 667 10 16 63 0 2 66 1 0 331 0 3 303 chain 39729 chr9 138394717 + 28234386 28234915 MLT2A2 560 + 4 560 34871 136 15 16 200 0 12 38 0 11 71 0 3 69 chain 171133 chr9 138394717 + 28243657 28246024 L1PA10 4194 + 1771 4161 11044 54 1 0 4 8 2 391 0 1 277 12 32 97 4 5 23 1 0 19 3 7 135 0 1 122 5 9 6 7 0 513 6 9 126 12 13 85 0 9 276 7 8 87 40 34 34 1 0 11 chain 294250 chr9 138394717 + 28306341 28309592 L1PA3long 6157 + 2906 6157 7003 3251 chain 553631 chr9 138394717 + 28348134 28354162 L1PA2 6032 + 0 6030 509 256 1 0 2275 0 1 3345 1 2 135 0 1 15 chain 63976 chr9 138394717 + 28387021 28387982 LTR12 884 + 0 861 25415 24 1 0 54 25 0 153 0 4 10 0 1 20 1 3 86 0 22 307 103 0 177 chain 2082 chr9 138394717 + 28387100 28387125 LTR12 884 + 185 210 62176 25 chain 2685 chr9 138394717 + 28387771 28387805 LTR12 884 + 783 817 78350 34 chain 21017 chr9 138394717 + 28433626 28433913 L1PB2 3958 + 3556 3838 55099 61 1 0 64 2 1 71 2 0 21 6 5 59 chain 6393 chr9 138394717 + 28440934 28441203 MLT1A1 405 + 0 343 79697 19 15 20 4 1 0 40 142 212 48 chain 22089 chr9 138394717 + 28482689 28482932 L1PA3long 6157 + 4840 5083 53716 243 chain 3104 chr9 138394717 + 28494132 28494172 MADE1 96 + 5 45 98762 40 chain 3162 chr9 138394717 + 28515505 28515540 Tigger1 2417 + 1464 1499 98265 35 chain 5068 chr9 138394717 + 28546032 28546093 L1MA8 2339 + 2025 2086 85315 61 chain 461775 chr9 138394717 + 28553073 28558157 L1PA2 6032 + 938 6030 4086 8 0 1 1736 0 3 1082 0 2 1230 0 1 628 0 1 400 chain 208099 chr9 138394717 + 28588977 28591310 L1PA4 6152 + 3815 6143 9418 884 2 0 79 2 1 522 2 0 842 chain 10567 chr9 138394717 + 28630105 28630222 L1PA2 6032 + 5913 6030 69293 117 chain 75293 chr9 138394717 + 28699279 28700280 MER11A 1151 + 0 1151 22769 79 0 99 116 4 0 164 1 0 80 4 5 17 1 0 122 6 9 52 0 4 56 1 0 15 7 41 14 0 1 56 0 16 88 1 0 117 chain 58157 chr9 138394717 + 28721011 28721820 L1PA8 5853 + 5036 5853 26917 50 2 1 92 6 16 25 6 7 337 1 0 44 2 0 70 30 28 34 2 1 16 6 5 14 1 6 71 chain 30893 chr9 138394717 + 28822428 28822849 MLT2A1 477 + 25 477 41222 144 4 1 215 4 0 6 5 43 43 chain 109253 chr9 138394717 + 28878019 28879245 L1PA3long 6157 + 3174 4402 17149 14 0 1 73 0 1 4 1 0 801 0 1 333 chain 87754 chr9 138394717 + 28880204 28881214 LTR5A 1029 + 0 1029 20085 134 0 13 732 0 6 144 chain 7020 chr9 138394717 + 28928423 28928511 Tigger2b_Pri 1066 + 0 88 77535 88 chain 67223 chr9 138394717 + 28949101 28949959 L1P3 4156 + 3298 4139 24644 201 0 1 50 7 4 452 2 0 5 0 1 25 27 8 22 0 8 32 2 0 6 1 0 26 chain 12571 chr9 138394717 + 28951879 28952033 L1PA8A 6298 + 5512 5669 65850 51 0 3 103 chain 28712 chr9 138394717 + 28971981 28974594 L1M1 2793 + 661 2188 43770 36 198 172 24 17 14 65 4 0 17 1 0 14 1 0 143 17 13 21 1 0 26 2 1 39 1816 776 30 34 30 18 6 13 18 14 1 6 0 5 45 chain 547850 chr9 138394717 + 28989909 28996022 L1PA3long 6157 + 5 6149 871 192 0 1 54 0 38 607 0 1 100 9 0 1591 0 2 598 5 4 709 1 0 2247 chain 132130 chr9 138394717 + 29008794 29010317 L1PA5 6144 + 3744 5269 13819 8 1 0 58 1 0 537 0 4 337 0 1 338 1 0 242 chain 79771 chr9 138394717 + 29047473 29049095 L1MA1 4479 + 2893 4136 21672 26 0 1 38 1 0 27 2 0 22 9 13 75 4 2 61 2 0 17 8 4 44 345 0 28 1 0 12 5 0 128 11 0 129 2 0 18 0 1 140 22 27 8 1 0 25 2 0 5 13 12 18 4 5 50 1 0 14 6 4 12 1 0 88 1 0 5 3 0 122 12 11 22 2 0 21 1 0 8 chain 14727 chr9 138394717 + 29053412 29053571 L1PA4 6152 + 5992 6151 62633 159 chain 3624 chr9 138394717 + 29060957 29061129 L1MEf 1413 + 649 835 94228 34 104 120 5 3 0 20 0 1 6 chain 224953 chr9 138394717 + 29080975 29083593 L1PA5 6144 + 3530 6142 8892 268 4 0 11 1 0 535 0 4 414 1 0 262 8 7 263 9 8 688 1 2 134 0 1 8 4 0 7 chain 115951 chr9 138394717 + 29123967 29125425 L1PA8 5853 + 4401 5853 16245 268 2 1 340 2 0 72 0 2 359 0 1 92 0 1 27 2 0 44 2 0 71 22 21 40 2 1 21 1 0 91 chain 11977 chr9 138394717 + 29253189 29253379 L1PA16 3655 + 3421 3585 66874 135 22 0 21 4 0 8 chain 540572 chr9 138394717 + 29270226 29276349 L1PA5 6144 + 0 6143 1306 120 0 14 1101 0 1 2250 0 4 449 0 1 340 0 2 340 0 1 1509 4 1 10 chain 73176 chr9 138394717 + 29306027 29306823 L1PA2 6032 + 5236 6032 23283 796 chain 9747 chr9 138394717 + 29366407 29366514 L1PA3long 6157 + 5898 6005 70939 107 chain 12914 chr9 138394717 + 29366519 29366665 L1PA3long 6157 + 6011 6157 65231 146 chain 15819 chr9 138394717 + 29377117 29377317 LTR2 463 + 0 210 61259 61 0 3 11 0 4 50 0 3 78 chain 400590 chr9 138394717 + 29379375 29384218 Harlequin-int 5206 + 125 5206 5145 23 5 0 158 0 3 7 0 1 41 0 5 100 2 0 84 0 2 133 1 0 164 0 1 24 1 0 216 27 19 68 1 0 115 0 1 144 0 10 129 2 1 367 2 0 787 0 1 23 0 1 14 5 0 98 0 12 319 0 225 380 5 4 392 0 1 71 1 0 421 1 4 512 chain 36285 chr9 138394717 + 29384218 29384677 LTR2 463 + 0 463 37223 129 0 3 10 15 16 305 chain 58321 chr9 138394717 + 29384825 29385550 L1PA7 6471 + 5737 6457 26860 87 8 0 18 2 3 49 0 2 184 0 1 243 6 5 128 chain 115160 chr9 138394717 + 29427731 29429189 L1PA7 6471 + 5018 6464 16361 302 1 2 65 0 1 233 1 0 10 0 2 6 8 7 110 6 7 238 25 9 309 1 2 143 chain 550476 chr9 138394717 + 29450397 29456733 L1PA3long 6157 + 4 6157 708 574 0 1 467 1 0 144 0 3 145 189 0 920 0 2 3135 0 1 761 chain 6659 chr9 138394717 + 29451844 29451917 L1PA3long 6157 + 1455 1528 77842 73 chain 60509 chr9 138394717 + 29463553 29464608 L1PA13 3608 + 94 1138 26231 15 6 4 26 3 0 20 71 59 71 1 0 3 1 0 124 14 12 17 0 3 10 14 5 19 1 0 16 70 65 67 2 0 131 0 25 162 10 8 16 0 1 165 chain 53370 chr9 138394717 + 29494035 29494782 L1PA8 5853 + 5138 5853 28450 403 30 4 19 1 0 46 2 0 68 11 12 6 2 0 5 1 0 39 2 1 19 1 0 16 0 1 76 chain 6909 chr9 138394717 + 29533249 29533331 L1PA15 4387 + 718 800 77924 82 chain 44385 chr9 138394717 + 29547093 29547649 MER41A 554 + 0 554 31892 145 2 0 409 chain 43428 chr9 138394717 + 29554046 29554598 MER41A 554 + 0 554 32489 343 0 1 53 1 2 155 chain 214306 chr9 138394717 + 29583208 29585828 L1PA7 6471 + 3832 6467 9195 176 2 1 89 0 1 388 0 1 50 0 2 34 1 0 4 0 1 49 0 1 825 4 5 143 0 4 20 0 5 666 15 16 154 chain 5404 chr9 138394717 + 29648797 29648861 THE1C 375 + 3 67 83689 64 chain 4304 chr9 138394717 + 29649892 29649971 L1MB1 2102 + 742 822 89470 33 14 15 32 chain 262152 chr9 138394717 + 29760781 29764436 L1PBa1 4058 + 10 3666 7904 25 11 1 10 5 3 7 1 0 13 4 5 104 2 1 247 13 12 28 4 6 136 15 14 259 7 8 199 15 14 28 6 4 66 2 0 163 8 6 275 0 5 13 2 1 31 0 1 585 11 15 166 1 0 26 1 4 184 0 1 73 12 13 75 0 2 146 0 7 91 9 13 72 0 2 175 1 0 90 1 0 58 12 0 53 12 5 50 0 4 21 2 11 29 chain 187894 chr9 138394717 + 29764941 29767719 L1PB1 5432 + 2628 5404 10217 14 6 8 16 1 2 61 7 5 7 0 2 51 6 8 23 0 1 244 1 0 517 12 13 127 4 0 198 1 0 27 10 11 147 0 3 67 47 48 257 14 13 120 1 5 24 0 17 415 0 4 20 17 15 20 1 0 9 1 0 11 22 16 46 6 5 12 1 0 44 41 28 18 24 19 21 4 3 21 1 0 13 chain 46712 chr9 138394717 + 29870436 29870981 L1PA7 6471 + 5034 5579 30768 545 chain 464328 chr9 138394717 + 29888686 29894705 L1PA8A 6298 + 267 6291 4011 40 2 1 21 9 1 78 2 0 14 1 0 10 1 0 3 1 0 67 2 0 10 1 0 325 0 1 282 9 6 326 0 3 167 0 1 11 0 4 9 20 10 353 0 1 16 1 0 10 8 0 244 6 7 79 0 2 18 0 4 43 1 0 58 5 3 5 0 1 15 10 11 82 0 7 8 4 8 133 0 3 133 0 2 172 0 2 338 0 1 23 1 0 4 0 7 248 10 0 179 0 2 110 10 9 77 0 1 4 0 2 113 7 14 148 0 1 149 1 2 190 5 6 120 2 0 502 6 7 150 1 0 521 0 1 285 chain 151984 chr9 138394717 + 29997299 29998957 L1PA3long 6157 + 4499 6157 12229 1658 chain 26379 chr9 138394717 + 30067301 30067585 AluYa5 310 + 28 310 47152 104 2 0 178 chain 58390 chr9 138394717 + 30076345 30077151 MER4E1 777 + 0 777 26838 26 2 0 303 0 19 85 0 1 106 46 0 47 1 0 190 chain 541140 chr9 138394717 + 30106866 30112891 L1PA3long 6157 + 0 6156 1264 153 0 1 622 0 128 958 1 0 1270 0 4 3012 1 0 8 chain 21657 chr9 138394717 + 30171181 30171420 L1PA3long 6157 + 5918 6157 54282 239 chain 118459 chr9 138394717 + 30185756 30187124 L1PA6 6164 + 4796 6162 15811 519 1 0 309 0 1 522 2 0 15 chain 26842 chr9 138394717 + 30215530 30215830 L1PA5 6144 + 5839 6139 46482 300 chain 26302 chr9 138394717 + 30218992 30219348 L1P2 5180 + 2097 2446 47266 106 3 5 111 9 0 127 chain 10371 chr9 138394717 + 30287741 30287858 L1PA2 6032 + 5913 6030 69667 117 chain 6358 chr9 138394717 + 30299735 30300021 LTR12C 1709 + 932 1017 79817 41 201 0 44 chain 2092 chr9 138394717 + 30299955 30299977 LTR12C 1709 + 873 895 105826 22 chain 152546 chr9 138394717 + 30339312 30341252 L1PA7 6471 + 4538 6461 12198 43 0 1 96 0 2 275 1 0 4 11 16 16 38 29 74 0 1 529 2 0 74 0 2 138 3 6 350 20 0 61 0 1 205 chain 9749 chr9 138394717 + 30341805 30341917 L1PA7 6471 + 5503 5615 70934 112 chain 7482 chr9 138394717 + 30341918 30342006 L1PA7 6471 + 5615 5703 76170 88 chain 45293 chr9 138394717 + 30342006 30342553 L1PA7 6471 + 5707 6262 31423 134 1 9 412 chain 11015 chr9 138394717 + 30419227 30419355 L1PA7 6471 + 6342 6470 68534 128 chain 3105 chr9 138394717 + 30454644 30454683 MER92A 404 + 328 367 98760 39 chain 13333 chr9 138394717 + 30458489 30458847 L1PB1 5432 + 5099 5414 64575 16 9 0 23 1 0 4 44 37 40 4 3 14 1 0 45 1 0 9 49 32 10 1 0 14 2 0 24 1 0 21 6 5 8 1 0 10 chain 33900 chr9 138394717 + 30509905 30510283 L1PA2 6032 + 5653 6032 38785 42 0 1 336 chain 532255 chr9 138394717 + 30539477 30545465 L1PA3long 6157 + 0 6156 1739 141 15 16 137 0 13 331 0 20 123 0 128 1078 6 7 117 0 3 1069 0 1 708 1 0 4 0 2 2258 chain 4637 chr9 138394717 + 30555141 30555222 MLT1A0 366 + 284 366 87617 32 11 12 38 chain 265246 chr9 138394717 + 30570085 30573453 L1PA8 5853 + 2480 5847 7821 75 0 8 153 5 0 160 2 1 4 0 1 107 17 4 35 0 1 180 5 7 36 7 6 247 1 2 115 1 0 1250 6 7 127 0 1 8 0 1 70 0 1 4 1 0 137 0 1 335 1 0 46 2 0 69 1 0 63 1 0 18 2 1 27 3 12 47 chain 65823 chr9 138394717 + 30584324 30585243 L1PA10 4194 + 3221 4136 24995 103 6 4 139 17 20 49 1 3 7 2 0 220 1 0 316 1 0 35 3 0 19 chain 295995 chr9 138394717 + 30594047 30597322 L1PA3long 6157 + 1515 4790 6952 3275 chain 18292 chr9 138394717 + 30604474 30604817 THE1B 368 + 0 368 58372 44 32 47 40 10 8 25 1 0 34 32 45 125 chain 21118 chr9 138394717 + 30610148 30610398 L1PA7 6471 + 6220 6470 54985 250 chain 68041 chr9 138394717 + 30637887 30638631 L1PA3long 6157 + 4321 5065 24449 744 chain 3697 chr9 138394717 + 30662163 30662449 MLT2B1 522 + 82 380 93628 40 223 235 23 chain 97373 chr9 138394717 + 30681094 30682232 L1PA5 6144 + 5003 6143 18610 272 8 7 140 0 1 566 0 1 100 0 1 52 chain 14803 chr9 138394717 + 30686722 30686906 L1PA8 5853 + 5381 5560 62526 9 6 0 83 0 1 86 chain 3825 chr9 138394717 + 30686907 30686956 L1PA8 5853 + 5560 5609 92672 49 chain 6027 chr9 138394717 + 30686958 30687029 L1PA8 5853 + 5609 5680 80980 71 chain 2166 chr9 138394717 + 30687060 30687090 L1PA8 5853 + 5710 5740 105455 30 chain 7550 chr9 138394717 + 30687115 30687205 L1PA8 5853 + 5763 5853 75996 90 chain 10806 chr9 138394717 + 30766459 30766636 MSTA 426 + 26 212 68842 82 2 0 5 24 37 56 2 0 6 chain 6023 chr9 138394717 + 30771106 30771185 MADE1 96 + 0 95 80993 46 0 16 33 chain 20188 chr9 138394717 + 30820103 30820380 THE1A 353 + 0 341 56153 73 0 65 33 1 0 6 0 1 9 1 4 6 3 0 5 1 0 139 chain 118502 chr9 138394717 + 30820392 30821929 THE1A-int 1579 + 0 1573 15808 169 11 11 110 12 7 69 6 5 69 0 2 386 2 1 461 0 41 242 chain 182699 chr9 138394717 + 30852248 30854953 MER61-int 3695 + 0 3191 10456 24 25 10 12 1 0 38 14 10 75 1 0 29 39 0 74 1 0 134 18 7 16 0 572 250 0 1 47 29 3 56 5 6 186 0 1 72 0 5 162 1 0 336 0 1 4 0 1 148 0 1 45 22 27 262 15 14 61 13 16 57 6 5 52 13 14 23 39 35 257 13 12 30 chain 32327 chr9 138394717 + 30858011 30858387 L1P1 4361 + 3855 4231 40091 204 0 1 90 1 0 81 chain 130180 chr9 138394717 + 30956177 30957619 L1PA3long 6157 + 4713 6157 14017 767 0 2 675 chain 447379 chr9 138394717 + 31005062 31010932 L1PA8 5853 + 50 5853 4426 22 13 10 10 37 16 110 2 1 19 2 3 61 21 9 322 6 0 12 0 6 132 0 3 397 6 1 172 0 1 485 2 0 182 16 1 54 6 1 191 1 5 414 0 1 238 0 1 55 11 12 269 4 6 123 1 0 398 0 2 150 0 1 71 0 13 178 1 0 5 1 2 663 29 0 4 0 1 50 11 12 143 1 2 474 1 0 46 9 7 56 8 7 60 2 1 19 1 0 93 chain 120205 chr9 138394717 + 31052381 31053760 L1P1 4361 + 2966 4341 15499 1125 1 0 57 1 0 157 1 0 23 2 1 12 chain 16584 chr9 138394717 + 31074204 31074549 L1PB1 5432 + 5108 5422 60280 6 1 0 24 1 0 8 1 0 12 5 1 9 2 0 52 2 1 44 56 43 19 7 4 15 2 0 24 1 0 21 1 0 13 1 0 18 chain 52640 chr9 138394717 + 31101803 31102465 L1PA7 6471 + 5774 6461 28689 57 7 15 143 1 4 229 0 13 166 0 1 59 chain 97979 chr9 138394717 + 31132990 31134654 L1PB1 5432 + 3910 5413 18529 497 0 1 4 1 0 71 7 12 94 7 21 12 1 2 75 1 0 112 4 5 47 0 1 152 0 4 23 10 10 28 0 4 18 1 2 9 164 0 24 1 0 9 16 11 11 2 0 51 2 1 10 7 6 44 1 0 6 8 0 7 3 4 10 1 0 19 10 7 12 2 0 16 8 7 22 6 5 8 1 0 9 chain 96260 chr9 138394717 + 31142849 31144039 L1PA7 6471 + 5251 6454 18740 52 0 1 114 3 14 424 0 3 273 1 0 189 1 0 72 7 5 5 0 2 49 chain 95812 chr9 138394717 + 31180998 31182076 L1PA5 6144 + 5066 6140 18794 928 1 2 135 5 0 9 chain 43095 chr9 138394717 + 31272876 31273407 LTR10F 562 + 0 562 32718 35 0 8 185 0 3 37 0 17 128 0 3 146 chain 555873 chr9 138394717 + 31294065 31300087 L1PA2 6032 + 0 6022 367 722 0 1 2881 1 0 2418 chain 3535 chr9 138394717 + 31312719 31312764 MADE1 96 + 50 96 94974 19 0 1 26 chain 36336 chr9 138394717 + 31326306 31326754 LTR7 482 + 0 482 37186 230 0 31 158 11 14 49 chain 279183 chr9 138394717 + 31326756 31330444 HERVH-int 3825 + 0 3825 7448 241 0 1 38 0 2 51 1 0 31 15 16 93 18 19 41 1 0 44 1 0 27 53 25 20 42 0 8 2 1 38 2 1 80 1 5 56 0 3 395 24 9 186 9 0 27 0 2 10 1 0 137 1 0 172 0 1 220 0 4 52 40 45 95 1 0 499 3 7 418 0 210 49 6 7 439 chain 5109 chr9 138394717 + 31327358 31327411 HERVH-int 3825 + 488 541 81996 53 chain 35650 chr9 138394717 + 31334249 31334697 LTR7 482 + 0 482 37632 230 0 31 85 0 1 72 12 14 49 chain 24411 chr9 138394717 + 31353940 31354261 L1PA7 6471 + 6138 6459 50151 175 2 0 7 8 10 129 chain 124956 chr9 138394717 + 31375488 31376899 L1PA5 6144 + 3070 4494 14713 94 0 11 771 0 1 230 0 1 316 chain 116154 chr9 138394717 + 31410436 31411889 L1PA7 6471 + 5003 6470 16198 169 0 4 186 0 1 4 2 0 18 1 7 4 1 0 35 0 1 268 2 3 192 1 3 240 0 1 235 5 6 90 chain 29301 chr9 138394717 + 31440338 31440741 LTR7 482 + 0 475 42892 69 8 46 109 10 11 11 1 32 29 0 2 166 chain 37087 chr9 138394717 + 31443710 31444187 LTR2B 499 + 5 499 36688 7 0 1 61 3 0 37 3 22 175 0 1 8 1 0 182 chain 5111 chr9 138394717 + 31525612 31526154 L1M3 994 + 54 540 85101 7 1 0 14 1 0 25 437 388 34 5 0 18 chain 97132 chr9 138394717 + 31552573 31553655 L1P1 4361 + 3095 4177 18644 83 0 1 972 1 0 26 chain 8894 chr9 138394717 + 31557421 31557581 MLT2B1 522 + 42 184 72793 53 14 0 8 5 0 36 6 7 38 chain 88793 chr9 138394717 + 31684539 31685648 L1PA7 6471 + 5366 6470 19891 256 2 0 144 1 0 18 2 3 404 6 3 130 2 1 27 3 4 114 chain 85852 chr9 138394717 + 31770536 31771639 MER11A 1151 + 0 1136 20480 108 0 2 67 8 0 22 2 0 31 1 0 60 0 2 246 0 1 21 1 0 110 9 12 137 6 40 57 1 2 18 9 11 24 0 1 85 1 0 79 chain 91169 chr9 138394717 + 31772837 31778507 HERVK11-int 2540 + 686 2303 19474 51 5 0 14 7 0 21 2 0 21 77 41 37 2 0 5 1 4 10 3987 95 16 23 8 15 21 20 21 2 0 64 1 0 33 18 17 9 3 0 21 28 17 16 23 12 36 21 1 303 0 3 134 5 0 104 1 0 77 1 0 111 4 0 77 1 0 4 0 5 129 86 43 22 chain 6242 chr9 138394717 + 31881930 31882031 L1MA3 4352 + 4187 4282 80200 48 4 0 24 3 1 22 chain 32624 chr9 138394717 + 31908364 31908778 LTR3B 427 + 23 427 39837 277 3 0 32 9 3 13 1 0 79 chain 33316 chr9 138394717 + 31909225 31909652 LTR3B 427 + 0 420 39244 300 4 1 31 18 14 74 chain 118929 chr9 138394717 + 31940630 31942160 THE1B-int 1605 + 37 1600 15717 228 3 5 33 1 0 55 3 7 35 0 1 31 0 25 381 18 19 413 0 1 329 chain 509284 chr9 138394717 + 31989700 31995984 L1PA6 6164 + 3 6161 2801 564 1 0 687 1 0 64 0 1 34 0 1 927 1 2 50 0 1 57 0 1 5 0 4 365 0 1 242 0 1 159 1 3 17 0 1 119 0 1 7 0 2 109 127 0 95 0 1 85 9 13 55 0 1 549 2 0 86 31 1 6 3 0 486 7 12 120 1 0 374 0 4 41 0 4 193 0 3 604 chain 40834 chr9 138394717 + 31998622 31999107 L1PA6 6164 + 5679 6159 34074 380 5 0 100 chain 20025 chr9 138394717 + 32038121 32038431 L1PA8 5853 + 5550 5853 56354 14 1 0 44 2 0 69 20 18 34 13 12 19 1 0 93 chain 122795 chr9 138394717 + 32053563 32054949 L1PA4 6152 + 1105 2491 15062 335 1 0 708 0 1 342 chain 15743 chr9 138394717 + 32086616 32086799 L1PA2 6032 + 5841 6031 61361 35 2 9 146 chain 422534 chr9 138394717 + 32098546 32103658 L1P2 5180 + 2 5178 4848 147 1 0 98 3 2 248 11 10 8 1 0 272 1 0 6 2 1 94 0 64 207 13 16 1528 0 3 460 0 2 15 2 0 1135 0 2 37 0 4 57 12 9 662 1 0 47 1 0 38 1 0 4 chain 104629 chr9 138394717 + 32123311 32124501 L1PA5 6144 + 4930 6141 17736 20 0 1 956 0 20 214 chain 282491 chr9 138394717 + 32129252 32133068 L1PA10 4194 + 245 3995 7360 5 1 0 22 2 0 15 1 0 7 57 31 10 2 0 21 9 7 18 8 0 12 18 11 44 0 1 35 2 0 16 0 1 596 3 4 55 1 0 67 11 7 28 1 6 6 8 0 429 0 2 66 28 7 4 0 1 120 2 0 170 1 2 327 0 2 161 0 5 63 0 1 33 6 5 286 0 3 418 1 3 72 11 5 136 0 1 109 1 0 4 0 1 224 0 2 63 chain 38373 chr9 138394717 + 32144068 32144609 MLT2A2 560 + 0 560 35796 156 14 24 25 13 12 61 1 0 126 2 13 73 0 1 46 1 0 23 chain 106014 chr9 138394717 + 32145866 32147237 HERVL-int 5654 + 10 1397 17564 39 4 21 404 6 9 38 11 7 127 8 7 171 0 1 563 chain 6265 chr9 138394717 + 32148421 32149049 LTR13 1007 + 2 628 23771 71 2 0 8 0 3 7 0 6 7 6 0 24 4 0 253 4 5 242 chain 540275 chr9 138394717 + 32149075 32155113 L1PA3long 6157 + 0 6157 1323 152 0 1 127 0 1 86 0 1 408 0 128 1606 0 1 551 0 1 1519 19 1 701 0 4 869 chain 3741 chr9 138394717 + 32155156 32155531 LTR13 1007 + 629 1007 23771 65 1 4 309 chain 23367 chr9 138394717 + 32184385 32184658 AluYc 301 + 0 275 51824 113 2 4 158 chain 264167 chr9 138394717 + 32187870 32190832 L1PA5 6144 + 2997 5963 7850 161 1 0 18 3 0 20 0 1 1147 0 4 340 0 1 890 0 2 382 chain 6042 chr9 138394717 + 32210991 32211061 Tigger1 2417 + 855 925 80920 70 chain 22075 chr9 138394717 + 32306747 32307079 LTR26 622 + 0 366 53733 161 19 25 40 8 10 61 1 28 14 2 1 26 chain 60443 chr9 138394717 + 32307757 32308439 L1P1 4361 + 3452 4189 26252 377 0 56 263 1 0 41 chain 129078 chr9 138394717 + 32312560 32314860 L1MA2 4263 + 2118 4113 14134 65 321 21 84 24 11 9 0 3 98 21 22 87 2 1 15 6 15 95 5 3 120 0 1 7 3 0 456 3 4 22 1 0 152 1 2 41 0 4 16 0 11 101 10 6 72 1 0 58 24 25 45 19 16 30 13 14 13 1 0 93 11 9 57 1 2 30 22 15 35 1 0 9 chain 21051 chr9 138394717 + 32315161 32315382 AluYa5 310 + 84 305 55061 221 chain 21924 chr9 138394717 + 32342789 32343064 AluSc5 308 + 28 301 53938 260 2 0 13 chain 86712 chr9 138394717 + 32362714 32364703 L1PB1 5432 + 4131 5422 20270 330 307 0 47 16 17 104 0 2 7 15 13 4 0 1 147 3 4 179 310 0 117 65 11 20 1 0 12 1 0 10 18 12 51 1 0 18 6 5 37 2 1 16 2 0 6 14 6 11 33 27 24 1 0 22 1 0 12 1 0 18 chain 91574 chr9 138394717 + 32392730 32393792 MER11C 1089 + 0 1073 19399 440 2 0 525 0 11 17 0 2 78 chain 26223 chr9 138394717 + 32459940 32460296 THE1A 353 + 0 353 47385 50 3 2 56 2 0 64 1 2 28 1 0 151 chain 518316 chr9 138394717 + 32508303 32514736 L1PA7 6471 + 3 6469 2349 12 5 4 266 19 17 28 3 0 5 5 8 57 1 3 353 1 2 258 5 6 188 0 4 26 0 4 126 10 17 184 5 6 182 1 0 275 0 1 291 0 1 304 2 1 257 8 12 199 0 4 114 1 2 283 1 0 41 3 0 5 5 9 48 0 1 134 0 1 52 7 19 504 1 0 698 1 0 94 8 0 26 3 5 477 1 4 280 2 1 66 9 10 481 2 0 10 chain 35903 chr9 138394717 + 32524871 32525345 LTR3A 482 + 0 482 37473 109 0 1 5 0 1 28 0 1 100 11 13 4 1 0 30 0 4 111 1 0 11 0 1 63 chain 6158 chr9 138394717 + 32569816 32570027 Tigger1 2417 + 2214 2417 80507 24 51 56 48 9 31 14 44 9 21 chain 4942 chr9 138394717 + 32577242 32577301 MER2 342 + 190 249 85922 59 chain 41366 chr9 138394717 + 32578884 32579421 MER41A 554 + 13 554 33752 21 5 8 201 1 2 127 1 0 149 1 2 31 chain 6499 chr9 138394717 + 32579444 32579521 MER21B 843 + 672 749 79354 77 chain 114733 chr9 138394717 + 32597915 32599523 L1MA2 4263 + 2466 4114 16423 160 0 12 7 13 1 128 1 0 7 0 1 17 0 15 27 1 0 14 0 1 57 0 1 240 9 8 49 0 1 45 0 2 81 5 4 176 0 34 25 1 0 5 2 0 7 9 5 30 0 3 5 0 1 27 1 0 138 4 1 61 0 1 93 21 22 82 5 0 45 1 0 9 chain 234072 chr9 138394717 + 32652251 32655627 L1PA14 3548 + 132 3485 8636 10 1 0 6 3 0 69 1 0 20 2 1 30 2 0 31 2 0 312 0 1 370 6 12 190 0 3 317 7 15 63 9 9 156 20 13 139 0 2 8 0 1 49 0 6 7 1 0 4 13 12 19 47 47 114 0 1 173 1 2 109 7 8 62 16 15 150 1 0 107 1 0 39 1 8 93 9 7 10 3 1 45 2 0 7 2 0 105 2 0 5 28 16 5 1 0 31 0 3 49 1 0 112 1 0 12 5 1 29 10 8 12 5 3 18 1 0 41 6 0 10 1 0 20 chain 51655 chr9 138394717 + 32669528 32670246 L1PA8 5853 + 5146 5853 28981 333 0 3 82 1 0 44 2 0 46 30 17 8 1 0 61 2 1 19 1 0 16 1 2 40 7 11 24 chain 56080 chr9 138394717 + 32681186 32684116 L1MA1 4479 + 700 3317 8931 6 0 3 33 56 61 102 1 0 50 1 0 360 0 4 145 11 9 485 283 2 116 7 9 35 1 2 40 4 0 11 0 1 334 4 3 91 2 1 65 1 0 70 30 0 10 0 1 19 0 3 32 1 0 69 26 24 60 12 10 19 2 0 107 11 14 44 37 36 25 1 0 40 1 0 14 9 5 47 chain 505040 chr9 138394717 + 32684144 32690256 L1PA4 6152 + 10 6140 2969 61 1 2 69 10 24 45 8 7 588 4 21 19 23 6 107 25 0 189 44 35 28 14 14 78 0 1 47 11 28 75 0 4 248 0 1 613 0 1 184 0 2 1986 1 0 240 0 13 536 1 0 100 0 1 757 chain 18547 chr9 138394717 + 32691920 32692889 L1MA1 4479 + 3317 4190 8931 54 8 11 7 3 0 59 0 1 66 1 0 32 26 4 70 0 2 7 37 0 85 1 0 24 2 0 16 1 0 74 44 23 7 1 0 25 0 1 62 1 0 5 3 0 42 11 10 43 0 1 7 0 1 22 1 0 26 5 3 35 1 0 9 28 21 18 chain 73238 chr9 138394717 + 32693947 32694828 SVA_A 1864 + 498 1864 23272 155 2 74 76 2 0 72 38 452 225 0 1 311 chain 21325 chr9 138394717 + 32694992 32695230 L1PA4 6152 + 5914 6152 54726 238 chain 1451 chr9 138394717 + 32710038 32710362 MER41A 554 + 0 313 42555 185 30 19 109 chain 547719 chr9 138394717 + 32710379 32716388 L1PA2 6032 + 3 6032 883 1118 1 0 1626 0 17 170 0 1 1855 0 1 1216 8 10 15 chain 1052 chr9 138394717 + 32716402 32716637 MER41A 554 + 313 554 42555 81 3 4 81 9 13 46 0 1 15 chain 550570 chr9 138394717 + 32729016 32735047 L1PA2 6032 + 0 6032 702 257 1 0 1722 0 1 448 1 2 3602 chain 5391 chr9 138394717 + 32764300 32764380 MADE1 96 - 0 96 83738 34 9 25 37 chain 7681 chr9 138394717 + 32820260 32820350 HY1 111 + 10 100 75674 90 chain 15478 chr9 138394717 + 32824524 32824898 MER87 546 + 137 513 61688 47 1 0 4 7 0 8 3 11 71 120 122 66 14 14 33 chain 10465 chr9 138394717 + 32839260 32839448 MER77B 728 + 495 636 69485 94 1 0 33 46 0 14 chain 43231 chr9 138394717 + 32894203 32894894 L1PA16 3655 + 2638 3350 32625 13 11 12 12 3 2 26 3 18 162 2 6 14 3 2 17 1 0 19 4 8 26 5 4 155 6 9 24 4 5 29 1 0 90 12 10 49 chain 8366 chr9 138394717 + 32907791 32907916 L1MB8 1703 + 1453 1586 73978 22 0 1 11 1 10 75 2 0 14 chain 5230 chr9 138394717 + 32918391 32918543 L1MD3 1191 + 990 1145 84542 9 2 0 53 68 73 20 chain 11170 chr9 138394717 + 32920300 32920434 MER6A 605 + 405 538 68303 31 1 0 102 chain 2975 chr9 138394717 + 32925849 32925968 L1MC4a 1092 + 970 1091 100106 20 53 65 7 10 0 29 chain 29391 chr9 138394717 + 32942796 32943142 LTR14A 344 + 0 344 42749 10 1 0 54 1 0 280 chain 5019 chr9 138394717 + 32944655 32944714 MER2 342 + 156 215 85567 59 chain 3956 chr9 138394717 + 32944862 32944924 MER2B 336 + 211 272 91711 31 5 4 26 chain 533185 chr9 138394717 + 32957813 32963956 L1PA6 6164 + 0 6157 1699 460 6 5 141 9 12 30 0 4 431 18 19 582 0 2 56 0 4 579 12 0 65 0 2 1137 0 1 225 0 5 1275 1 0 277 0 4 743 5 7 91 chain 9927 chr9 138394717 + 32976113 32976226 L1PA6 6164 + 5890 6003 70570 113 chain 12572 chr9 138394717 + 32976227 32976385 L1PA6 6164 + 6003 6162 65848 141 1 2 16 chain 9857 chr9 138394717 + 32982025 32982310 L1MC4a 1092 + 607 873 70709 56 35 34 11 9 0 22 2 0 30 3 0 19 41 36 14 11 15 18 3 0 11 chain 39697 chr9 138394717 + 32998409 32998879 L1PA7 6471 + 5999 6466 34892 398 9 6 63 chain 5237 chr9 138394717 + 33042126 33042195 MADE1 96 + 3 96 84509 18 1 25 50 chain 4632 chr9 138394717 + 33069466 33069518 L1MA3 4352 + 3303 3355 87632 52 chain 25720 chr9 138394717 + 33076867 33077171 AluSp 311 + 1 308 48142 56 0 1 53 1 0 55 0 3 139 chain 24392 chr9 138394717 + 33083422 33083701 L1PA5 6144 + 5856 6135 50182 279 chain 523559 chr9 138394717 + 33085449 33091564 L1PA5 6144 + 0 6144 2108 65 0 1 69 37 51 163 2 1 719 23 23 77 9 0 127 0 1 147 0 4 491 1 0 374 7 5 926 0 3 525 0 1 744 0 13 1290 0 1 94 0 2 66 0 1 146 2 3 11 chain 11767 chr9 138394717 + 33175565 33175789 Tigger3a 397 + 60 297 67276 15 55 64 28 6 10 120 chain 45124 chr9 138394717 + 33183287 33183787 L1PA3long 6157 + 5650 6152 31512 337 0 2 163 chain 31564 chr9 138394717 + 33183793 33184180 L1PA7 6471 + 6086 6467 40690 153 3 2 65 0 1 8 2 0 146 4 0 6 chain 3002 chr9 138394717 + 33198954 33198986 MLT2B3 573 + 7 39 99823 32 chain 40230 chr9 138394717 + 33347489 33348494 L1PB1 5432 + 4766 5430 34499 28 0 8 97 0 2 202 17 11 19 7 11 14 5 1 9 3 1 51 2 1 10 9 8 41 1 0 16 2 0 6 16 6 18 343 20 27 1 0 19 1 0 12 1 0 16 1 0 6 1 0 4 chain 10698 chr9 138394717 + 33362168 33362552 L1MA6 2487 + 2075 2401 69048 56 1 4 35 71 62 30 126 78 34 10 7 16 1 0 4 chain 90911 chr9 138394717 + 33423379 33424427 SVA_E 1901 + 898 1901 19522 25 1 0 4 8 5 163 1 0 12 41 0 160 0 1 633 chain 2893 chr9 138394717 + 33423593 33423634 SVA_E 1901 + 932 981 40476 27 5 1 7 0 12 2 chain 7928 chr9 138394717 + 33480336 33482450 LTR23 429 + 0 196 75050 65 1985 67 64 chain 19327 chr9 138394717 + 33577617 33578061 MSTA-int 1630 + 23 1609 57210 95 4 10 102 43 1175 18 67 65 28 11 10 25 5 12 46 chain 3511 chr9 138394717 + 33597097 33597137 MSTA 426 + 57 97 95165 40 chain 142964 chr9 138394717 + 33600250 33601837 SVA_D 2077 + 0 2075 12865 8 3 0 904 9 498 26 1 3 636 chain 52548 chr9 138394717 + 33628246 33628844 L1PA7 6471 + 5862 6461 28714 22 0 1 411 0 1 110 1 0 54 chain 20040 chr9 138394717 + 33632698 33632916 L1PA4 6152 + 5928 6146 56326 218 chain 74962 chr9 138394717 + 33642460 33643417 L1PA10 4194 + 3181 4161 22850 52 0 25 126 0 5 34 0 1 492 4 0 201 3 0 33 1 0 11 chain 10539 chr9 138394717 + 33659783 33659956 MER2 342 + 142 336 69337 120 30 51 23 chain 523461 chr9 138394717 + 33666031 33673483 L1PA6 6164 + 0 6161 2116 242 0 2 215 7 6 44 2 1 336 0 1 113 0 1 69 1311 0 285 0 1 149 0 4 122 0 3 1602 0 1 383 0 3 422 0 3 5 1 0 343 6 10 893 11 11 119 0 1 77 1 0 536 9 10 4 1 0 144 chain 113782 chr9 138394717 + 33667070 33668370 SVA_C 1631 + 0 1628 16581 13 7 0 7 0 1 648 0 77 84 4 260 233 0 1 304 chain 3775 chr9 138394717 + 33684270 33684310 MLT1D 503 + 89 129 93025 40 chain 33760 chr9 138394717 + 33708345 33708848 MER41A 554 + 13 540 38883 131 2 1 4 0 1 114 41 61 146 12 15 44 0 1 9 chain 240238 chr9 138394717 + 33725327 33728217 L1PA7 6471 + 3577 6468 8463 498 6 9 5 1 0 15 0 1 100 0 1 51 0 1 33 1 0 94 0 1 157 7 1 362 0 1 376 0 7 123 6 0 210 0 4 834 4 0 7 chain 27275 chr9 138394717 + 33736368 33736839 L1PB1 5432 + 4954 5397 45859 27 0 5 115 15 13 23 1 0 9 1 0 12 5 1 10 2 0 50 1 0 12 7 6 44 1 0 15 14 1 31 2 0 4 1 0 14 2 0 24 1 0 21 1 0 6 chain 22345 chr9 138394717 + 33743643 33743952 L1PB1 5432 + 4774 5094 53348 30 9 16 249 4 8 17 chain 50309 chr9 138394717 + 33744406 33745249 L1PB2 3958 + 1875 2590 29449 31 0 10 22 10 7 166 8 11 264 1 0 91 166 29 84 chain 3435 chr9 138394717 + 33791054 33791092 L1MA5A 2387 + 2241 2279 95779 38 chain 18844 chr9 138394717 + 33811129 33811337 LTR12D 1347 + 1135 1343 57724 208 chain 4854 chr9 138394717 + 33830977 33831033 HY3 101 + 0 56 86400 56 chain 13298 chr9 138394717 + 33836199 33836381 Tigger3c 601 + 403 570 64621 101 15 0 66 chain 3025 chr9 138394717 + 33840009 33840056 MLT1A0 366 + 301 349 99550 30 2 3 15 chain 12612 chr9 138394717 + 33924815 33925010 MER30 238 + 0 238 65784 24 5 23 29 0 3 14 15 37 108 chain 14223 chr9 138394717 + 34008150 34008336 AluSp 311 + 119 300 63301 23 6 1 157 chain 134607 chr9 138394717 + 34038309 34039864 SVA_C 1631 + 60 1631 13584 592 37 0 285 2 52 14 0 1 33 2 0 379 0 8 190 4 0 17 chain 29907 chr9 138394717 + 34056360 34056751 MER75 514 + 111 503 42129 10 1 3 269 1 0 110 chain 23223 chr9 138394717 + 34062924 34063211 AluSx4 309 + 6 294 52048 160 0 1 127 chain 155739 chr9 138394717 + 34136814 34138764 SVA_D 2077 + 16 2077 12020 11 7 1 541 40 0 118 0 40 45 0 40 99 0 86 28 0 51 153 0 1 27 0 1 4 10 37 89 14 13 22 78 0 642 10 0 12 chain 5276 chr9 138394717 + 34138022 34138100 SVA_D 2077 + 1120 1198 38356 78 chain 21876 chr9 138394717 + 34235655 34236379 Tigger3b 1229 + 778 1150 54008 39 11 8 29 16 20 66 344 0 128 0 28 11 45 8 35 chain 7222 chr9 138394717 + 34414439 34414517 L1PA8 5853 + 5765 5843 76877 78 chain 125029 chr9 138394717 + 34437742 34439263 LTR12C 1709 + 0 1709 14698 469 0 1 21 2 1 10 31 11 60 6 5 121 0 159 218 0 47 101 0 4 399 1 0 82 chain 3851 chr9 138394717 + 34468984 34469144 L1MEf 1413 + 645 807 92497 29 100 102 31 chain 7733 chr9 138394717 + 34509845 34509929 AluYb8 318 + 234 318 75525 84 chain 51536 chr9 138394717 + 34668565 34669285 MER4A 717 + 0 717 29029 36 7 8 77 0 3 256 2 0 9 13 14 39 2 1 5 0 1 189 22 17 56 1 0 6 chain 29761 chr9 138394717 + 34677918 34678306 MLT2A1 477 + 2 391 42287 156 17 24 22 0 1 180 7 0 6 chain 19910 chr9 138394717 + 34679487 34679719 AluSc5 308 + 53 285 56512 232 chain 5287 chr9 138394717 + 34703662 34703721 MER41B 635 + 488 547 84256 59 chain 28683 chr9 138394717 + 34720162 34720478 AluYb8 318 + 0 315 43828 123 1 0 192 chain 14631 chr9 138394717 + 34748271 34748449 MSTA 426 + 1 179 62764 178 chain 24569 chr9 138394717 + 34750609 34751081 L1MA3 4352 + 0 435 49905 15 22 22 39 1 0 67 46 40 25 6 3 19 31 5 102 5 4 94 chain 2643 chr9 138394717 + 34785570 34785606 MLT1D 503 + 445 478 102764 6 3 0 27 chain 116430 chr9 138394717 + 34800387 34802074 L1PA8 5853 + 4414 5853 16149 594 0 5 228 0 16 89 4 6 172 265 0 40 1 0 44 2 0 62 10 9 61 2 1 19 1 0 93 chain 89375 chr9 138394717 + 34863478 34865665 L1M1 2793 + 661 2230 19784 35 47 34 10 2 0 5 2 0 20 12 7 30 18 17 11 2 0 9 1 0 33 32 29 77 1 0 24 2 1 50 0 1 127 1 0 72 39 32 38 0 2 166 10 14 143 0 4 12 3 0 71 0 2 159 10 17 22 4 9 36 0 1 4 3 0 8 0 3 19 0 3 36 722 120 10 3 0 46 chain 7845 chr9 138394717 + 34874313 34874402 L1PA2 6032 + 3784 3873 75267 89 chain 446470 chr9 138394717 + 34878249 34883445 L1PA5 6144 + 0 5214 4450 120 0 14 441 0 1 118 0 6 52 12 13 287 0 1 116 9 0 87 11 21 169 0 4 693 6 0 595 2 0 438 1 0 333 1 0 1133 10 13 5 3 0 554 chain 2750 chr9 138394717 + 34910420 34910458 L1MA8 2339 + 2219 2255 101971 14 2 0 22 chain 144456 chr9 138394717 + 34936050 34937658 SVA_D 2077 + 16 2070 12735 874 0 269 28 0 1 30 0 2 9 0 177 53 1 0 41 1 0 125 0 1 433 2 0 11 chain 43054 chr9 138394717 + 34939923 34940473 LTR19B 566 + 0 566 32742 257 1 7 159 0 16 27 13 12 25 7 1 9 0 1 52 chain 24294 chr9 138394717 + 34942678 34943007 L1PA6 6164 + 5833 6162 50337 117 5 6 47 7 0 6 3 9 144 chain 60369 chr9 138394717 + 34949267 34950014 L1PA8 5853 + 5113 5853 26269 201 5 4 246 1 0 45 2 0 70 1 0 64 1 0 17 1 0 93 chain 31155 chr9 138394717 + 35003292 35003704 LTR7 482 + 0 482 41015 69 8 46 109 8 40 218 chain 317373 chr9 138394717 + 35003706 35007733 HERVH-int 3825 + 0 3825 6463 242 0 1 90 2 1 135 1 0 4 9 12 30 0 3 14 1 0 13 2 1 24 2 1 9 1 0 24 86 0 27 8 5 20 1 0 41 106 0 82 0 1 652 11 1 39 1 0 100 5 0 514 8 13 27 0 1 1074 0 1 256 0 1 366 chain 4546 chr9 138394717 + 35004309 35004363 HERVH-int 3825 + 488 542 81884 54 chain 2572 chr9 138394717 + 35004363 35004395 HERVH-int 3825 + 652 683 86590 4 1 0 27 chain 2224 chr9 138394717 + 35004520 35004548 HERVH-int 3825 + 604 631 105191 14 1 0 13 chain 27933 chr9 138394717 + 35008972 35009333 LTR7 482 + 0 482 44980 69 6 95 57 0 1 44 0 31 185 chain 43098 chr9 138394717 + 35026204 35026754 MER41A 554 + 0 554 32712 100 0 3 70 0 1 8 6 0 248 1 2 36 0 5 81 chain 18612 chr9 138394717 + 35029574 35029836 MSTB1-int 1597 + 1328 1593 57985 18 1 2 28 2 0 116 3 4 65 0 3 29 chain 59185 chr9 138394717 + 35052894 35053663 L1PB1 5432 + 4310 5094 26609 59 5 10 42 1 0 59 0 5 143 0 1 210 3 4 9 0 1 199 1 0 21 0 4 17 chain 30035 chr9 138394717 + 35120759 35121179 LTR7B 505 + 0 494 42018 10 0 2 93 0 10 60 15 77 26 0 2 82 1 0 79 14 13 40 chain 104391 chr9 138394717 + 35130514 35132435 MER4-int 2692 + 79 1646 17770 21 3 0 8 9 7 10 4 0 222 0 3 199 0 1 100 313 4 54 20 18 48 45 8 111 0 1 224 1 2 47 0 1 5 16 15 129 94 89 13 0 1 6 1 0 5 1 2 30 6 7 176 chain 58482 chr9 138394717 + 35156685 35157431 MER4E1 777 + 0 762 26818 21 1 3 60 0 3 81 1 0 4 0 1 48 0 1 241 0 1 79 0 9 210 chain 23771 chr9 138394717 + 35206604 35206890 AluSc 308 + 11 297 51163 286 chain 10312 chr9 138394717 + 35263821 35263970 MLT1A 405 + 223 368 69780 56 15 11 78 chain 4674 chr9 138394717 + 35286043 35286109 MER21C 908 + 3 65 87419 5 3 0 21 1 0 36 chain 8581 chr9 138394717 + 35291921 35292049 MER85 139 + 0 139 73493 82 20 31 26 chain 38474 chr9 138394717 + 35454104 35454795 L1M1 2793 + 662 1323 35739 40 94 73 27 11 10 16 14 11 20 6 0 36 3 1 6 1 0 101 1 0 52 1 4 119 2 1 84 0 3 57 chain 18309 chr9 138394717 + 35581250 35581499 THE1D-int 1627 + 1366 1621 58352 72 11 18 121 1 0 44 chain 39232 chr9 138394717 + 35581986 35582483 MER9a3 513 + 15 513 35189 4 0 1 90 0 1 145 1 0 151 1 0 27 3 4 75 chain 158469 chr9 138394717 + 35583416 35585343 HERVK9-int 4720 + 71 2000 11842 50 7 6 5 1 0 28 1 0 8 16 6 106 1 0 29 5 4 510 0 1 42 0 15 167 8 7 378 0 2 565 chain 98404 chr9 138394717 + 35586574 35587830 L1PBa 3878 + 1076 3739 18493 261 1 0 110 8 10 157 0 4 20 0 2 147 6 7 232 0 1400 289 2 1 23 chain 15468 chr9 138394717 + 35590569 35590925 L1PB1 5432 + 5107 5422 61699 7 5 0 20 1 0 12 1 0 12 21 15 47 2 1 16 1 0 43 2 1 15 24 13 17 9 6 14 2 0 24 1 0 23 16 8 21 chain 38003 chr9 138394717 + 35636818 35637333 LTR7B 505 + 0 496 36070 208 6 5 20 2 0 5 8 4 7 8 0 61 3 0 131 11 10 45 chain 19942 chr9 138394717 + 35656509 35656808 MER1B 344 + 41 343 56465 33 22 21 37 0 1 132 12 15 63 chain 29084 chr9 138394717 + 35709606 35709916 AluYg6 310 + 0 310 43212 310 chain 10164 chr9 138394717 + 35903939 35904067 MER85 139 + 1 139 70076 88 0 10 40 chain 21860 chr9 138394717 + 36001391 36001768 L1MA3 4352 + 3975 4328 54026 110 45 20 7 0 7 60 1 0 81 2 0 22 8 6 19 9 8 13 chain 24914 chr9 138394717 + 36014437 36014820 MSTA 426 + 1 426 49407 107 0 21 5 0 3 66 43 41 52 1 21 109 chain 75129 chr9 138394717 + 36057844 36058658 L1PA3long 6157 + 5338 6153 22810 359 0 1 455 chain 40713 chr9 138394717 + 36087181 36087645 L1PA7 6471 + 6000 6464 34140 464 chain 21769 chr9 138394717 + 36089509 36089835 Tigger4b 360 + 16 359 54144 9 0 1 4 0 7 179 0 1 62 37 45 35 chain 16317 chr9 138394717 + 36156618 36156837 MER1B 344 + 42 263 60608 39 13 15 167 chain 78154 chr9 138394717 + 36178572 36182868 L1MA3 4352 + 22 4205 22058 15 5 8 86 0 1 23 1 0 20 5 0 79 1030 107 60 1 0 25 0 5 132 30 25 85 4 0 10 561 2152 189 1 0 4 0 1 174 0 10 38 5 4 43 1 0 21 6 9 33 3 0 12 0 4 5 0 1 49 1457 671 56 1 0 26 chain 45305 chr9 138394717 + 36180203 36180715 MER9a1 513 + 0 513 31416 308 0 1 204 chain 22303 chr9 138394717 + 36188194 36188619 LTR3A 482 + 0 420 53402 12 2 0 13 1 0 82 0 3 70 100 95 105 0 2 14 12 10 14 chain 28221 chr9 138394717 + 36222136 36222435 AluYa5 310 + 0 298 44535 123 1 0 175 chain 3011 chr9 138394717 + 36231009 36231041 HY3 101 + 17 49 99724 32 chain 61639 chr9 138394717 + 36264623 36265392 LTR17 781 + 0 781 25955 326 2 1 11 11 0 186 0 1 185 2 24 39 0 1 7 chain 5852 chr9 138394717 + 36267782 36267849 U4 144 + 0 67 81681 67 chain 3301 chr9 138394717 + 36284316 36284355 tRNA-Thr-ACA 39 + 0 39 97007 39 chain 37342 chr9 138394717 + 36304389 36304842 LTR15 485 + 21 478 36520 129 0 2 130 0 4 151 1 0 5 2 0 14 0 1 21 chain 51458 chr9 138394717 + 36319880 36320538 PABL_A 660 + 0 660 29064 59 0 4 153 4 0 19 1 0 188 0 3 234 chain 8786 chr9 138394717 + 36350857 36351035 MER30 238 + 38 234 73021 46 50 70 34 3 0 25 0 1 20 chain 37992 chr9 138394717 + 36385678 36386180 HSMAR1 1287 + 785 1287 36079 128 12 17 121 5 0 236 chain 13416 chr9 138394717 + 36387121 36387314 MER41A 554 + 322 546 64445 86 0 26 34 13 18 60 chain 20397 chr9 138394717 + 36432508 36432760 AluSc 308 + 0 262 55886 50 4 0 185 0 14 13 chain 10461 chr9 138394717 + 36433211 36433428 L1MA3 4352 + 4145 4352 69493 25 14 13 21 2 1 12 0 4 39 6 2 20 2 1 5 1 0 29 2 0 11 6 2 22 chain 16360 chr9 138394717 + 36438308 36438531 MER30 238 + 1 238 60561 107 4 22 9 1 0 60 3 0 39 chain 50892 chr9 138394717 + 36458142 36458789 LTR12_ 688 + 0 688 29244 55 0 41 42 20 8 395 1 4 97 0 9 37 chain 112025 chr9 138394717 + 36534074 36536192 THE1B-int 1605 + 0 1605 16809 411 651 40 21 1 0 4 0 1 204 0 117 154 5 6 477 2 1 34 22 3 132 chain 48888 chr9 138394717 + 36541625 36542184 L1PA5 6144 + 5586 6142 29986 545 3 0 11 chain 4079 chr9 138394717 + 36563699 36563752 MER53 195 + 0 53 90894 53 chain 41428 chr9 138394717 + 36568719 36569273 Tigger1 2417 + 285 853 33717 46 10 11 184 0 2 140 2 12 40 0 1 132 chain 3905 chr9 138394717 + 36571413 36571461 MER57B2 428 + 0 48 92090 48 chain 46585 chr9 138394717 + 36626053 36626671 PABL_A 660 + 0 636 30816 127 1 0 100 0 1 17 20 33 106 0 3 195 0 2 52 chain 2875 chr9 138394717 + 36650615 36650654 HAL1 992 + 518 557 101029 29 0 1 4 1 0 5 chain 154796 chr9 138394717 + 36917797 36920575 Tigger1 2417 + 108 2293 12067 185 3 5 28 2 0 6 15 17 6 2 0 208 0 4 75 0 12 43 310 0 210 0 16 61 18 22 57 1 0 229 4 0 293 322 1 85 13 7 77 0 1 314 0 1 103 0 3 42 1 2 24 12 13 6 0 6 23 chain 6752 chr9 138394717 + 36930881 36930971 UCON1 95 + 5 94 78467 8 1 0 81 chain 5073 chr9 138394717 + 37062971 37063030 L1MB3 1562 + 1292 1351 85289 59 chain 7843 chr9 138394717 + 37160137 37160235 HY3 101 + 1 100 75270 23 0 1 75 chain 9347 chr9 138394717 + 37204927 37205059 MSTD 398 + 0 132 71822 56 7 7 69 chain 8135 chr9 138394717 + 37322267 37322369 HY1 111 + 9 111 74550 102 chain 10741 chr9 138394717 + 37407244 37407378 LTR72 515 + 332 466 68969 134 chain 3935 chr9 138394717 + 37416173 37416216 MER5A1 166 + 94 137 91870 43 chain 14310 chr9 138394717 + 37564947 37565265 THE1D 372 + 0 335 63185 15 0 2 15 1 0 25 10 1 16 5 6 20 2 1 34 5 10 22 63 79 78 0 4 7 chain 18650 chr9 138394717 + 37720678 37720894 AluSc 308 + 72 288 57945 216 chain 42648 chr9 138394717 + 37751779 37752681 LTR12C 1709 + 84 1183 32969 106 5 6 15 6 4 63 0 1 184 237 469 139 0 47 40 83 1 24 chain 2169 chr9 138394717 + 37752601 37752657 LTR12C 1709 + 859 915 69279 56 chain 5383 chr9 138394717 + 37752715 37752779 LTR12C 1709 + 654 718 83781 64 chain 81902 chr9 138394717 + 37821461 37822774 L1PB1 5432 + 4146 5413 21264 212 4 22 229 5 12 8 9 0 9 2 1 42 15 13 127 21 22 260 39 11 24 1 0 9 16 11 9 2 0 53 19 17 44 1 0 15 3 0 16 33 20 14 2 0 16 15 14 15 1 0 10 1 0 12 chain 2802 chr9 138394717 + 37840174 37840204 Tigger3c 601 + 64 94 101641 30 chain 3116 chr9 138394717 + 37877349 37877383 MLT1A 405 + 360 394 98648 34 chain 22833 chr9 138394717 + 37880473 37880760 AluSp 311 + 5 288 52614 201 1 2 4 1 0 48 0 1 21 5 0 6 chain 61135 chr9 138394717 + 37891195 37891865 SVA_C 1631 + 955 1628 26077 63 1 0 589 0 4 17 chain 121517 chr9 138394717 + 38075189 38077013 LTR12C 1709 + 0 1709 15259 139 17 11 150 0 11 27 0 43 278 0 8 36 41 0 134 1 0 235 0 2 38 1 0 4 4 2 97 44 13 145 0 4 61 4 3 46 6 8 86 0 33 11 1 0 27 133 0 48 1 0 9 chain 29339 chr9 138394717 + 38095864 38096169 AluYa8 305 + 0 305 42822 305 chain 3716 chr9 138394717 + 38111493 38111533 MER66C 541 + 369 409 93496 40 chain 8408 chr9 138394717 + 38147433 38147546 U8 134 + 4 118 73880 40 1 2 72 chain 9675 chr9 138394717 + 38148921 38149331 MLT1D 503 + 51 494 71109 56 48 43 23 6 12 13 112 144 14 76 76 62 chain 39968 chr9 138394717 + 38169271 38169874 LTR34 700 + 55 700 34681 20 11 10 38 8 17 74 1 2 61 0 15 57 5 12 20 1 4 128 0 11 20 2 0 78 12 11 67 chain 3541 chr9 138394717 + 38171426 38171485 LTR10A 586 + 186 235 94932 41 10 0 8 chain 12950 chr9 138394717 + 38205915 38206160 Tigger3a 397 + 139 397 65182 9 0 10 117 12 16 42 46 45 19 chain 135749 chr9 138394717 + 38241594 38243610 SVA_F 1814 + 335 1814 13461 601 0 1 11 401 14 247 150 0 595 1 0 10 chain 1777 chr9 138394717 + 38242206 38242248 SVA_C 1631 + 873 913 55943 37 2 0 3 chain 4609 chr9 138394717 + 38242259 38242397 SVA_F 1814 + 967 1105 54547 138 chain 7532 chr9 138394717 + 38242407 38242585 SVA_C 1631 + 944 1113 55943 6 3 0 14 1 0 38 2 0 3 1 0 13 1 0 77 1 0 18 chain 1603 chr9 138394717 + 38242854 38242902 SVA_F 1814 + 1160 1208 54547 48 chain 5793 chr9 138394717 + 38242902 38242969 SVA_F 1814 + 919 1001 73740 28 0 15 39 chain 1578 chr9 138394717 + 38242976 38243004 SVA_F 1814 + 1005 1033 60524 28 chain 44751 chr9 138394717 + 38252729 38253283 MER41A 554 + 0 554 31722 397 1 0 4 0 1 152 chain 8359 chr9 138394717 + 38273976 38274077 MLT2B3 573 + 4 105 74001 101 chain 4545 chr9 138394717 + 38281497 38281585 MER5A 189 + 44 133 88087 31 23 24 34 chain 156395 chr9 138394717 + 38324053 38325984 SVA_F 1814 + 0 1814 11979 825 30 22 8 1 0 26 0 1 10 49 0 55 0 15 16 5 6 144 0 1 35 78 0 6 1 0 285 0 3 339 0 1 8 2 0 8 chain 2431 chr9 138394717 + 38324878 38324908 SVA_F 1814 + 865 896 36767 20 1 2 9 chain 3971 chr9 138394717 + 38324953 38325002 SVA_F 1814 + 941 1005 36767 1 5 20 43 chain 5381 chr9 138394717 + 38325257 38325335 SVA_F 1814 + 924 988 56840 1 1 0 4 46 33 26 chain 4169 chr9 138394717 + 38325263 38325309 SVA_F 1814 + 1043 1089 57714 46 chain 22171 chr9 138394717 + 38325997 38326548 L1MA8 2339 + 1720 2236 53608 120 4 0 60 0 8 23 4 0 23 1 0 4 1 0 21 31 30 52 125 99 13 43 37 26 chain 28717 chr9 138394717 + 38351392 38351771 THE1C 375 + 2 375 43763 123 3 0 61 0 1 12 3 0 149 2 1 26 chain 101893 chr9 138394717 + 38377394 38378812 LTR12C 1709 + 0 1709 18073 215 3 1 61 16 19 37 0 46 84 2 0 6 0 1 107 1 2 25 15 11 35 0 278 184 1 0 4 4 2 97 44 13 146 0 2 248 10 11 47 0 1 26 chain 41689 chr9 138394717 + 38393750 38394251 LTR10D 510 + 0 510 33559 65 1 6 7 5 0 22 0 8 154 0 1 247 chain 54589 chr9 138394717 + 38438401 38439014 L1PA4 6152 + 5538 6152 28015 500 0 1 113 chain 5953 chr9 138394717 + 38552887 38552977 THE1D-int 1627 + 982 1111 81267 64 6 45 20 chain 21005 chr9 138394717 + 38589350 38589675 LTR76 689 + 365 681 55110 23 2 0 6 1 0 81 0 6 33 6 0 83 4 3 40 14 11 16 2 0 14 chain 10403 chr9 138394717 + 38695072 38695212 L1PA8 5853 + 5701 5852 69610 39 2 1 19 1 0 44 0 13 35 chain 28761 chr9 138394717 + 38732076 38732429 L1PA7 6471 + 6111 6465 43692 207 1 2 145 chain 533582 chr9 138394717 + 38779398 38785511 L1PA5 6144 + 3 6142 1675 33 0 1 1104 1 6 149 0 1 62 0 19 152 1 0 409 1 0 1236 0 1 89 0 4 407 5 0 203 1 0 510 1 0 15 0 1 240 0 1 1335 10 17 128 1 0 9 4 0 7 chain 104454 chr9 138394717 + 38800289 38801775 L1PB2 3958 + 482 1967 17762 250 8 35 9 29 0 30 3 5 186 1 0 4 0 2 219 5 6 27 0 1 56 0 1 30 9 14 225 13 1 15 8 6 51 1 0 140 0 3 161 0 2 6 chain 6869 chr9 138394717 + 38841933 38842269 MLT1C 463 + 73 406 78073 51 6 0 13 8 9 16 67 57 27 126 138 22 chain 34394 chr9 138394717 + 38890866 38891242 L1PA2 6032 + 5656 6031 38434 360 1 0 15 chain 24972 chr9 138394717 + 39012501 39012772 AluYa5 310 + 35 306 49323 271 chain 68269 chr9 138394717 + 39124476 39125253 L1PA5 6144 + 5098 5879 24390 195 1 5 581 chain 21474 chr9 138394717 + 39146894 39147258 THE1B 368 + 0 368 54546 64 1 0 105 1 0 21 17 24 10 32 31 43 14 14 56 chain 3207 chr9 138394717 + 39179350 39179385 MLT2D 439 + 395 430 97819 35 chain 171385 chr9 138394717 + 39202282 39204222 L1PA5 6144 + 4196 6143 11028 1486 0 2 319 0 4 124 1 2 10 chain 476564 chr9 138394717 + 39274403 39279954 L1PA4 6152 + 621 6151 3707 349 0 1 205 9 0 138 0 5 162 0 2 837 2 1 850 1 0 38 1 0 330 1 0 547 0 1 208 25 1 505 0 3 607 0 4 15 1 0 292 0 1 428 chain 11681 chr9 138394717 + 39296371 39296598 L1PA15 4387 + 4042 4297 67427 62 1 0 27 43 76 10 1 0 50 6 3 27 chain 39706 chr9 138394717 + 39304049 39304621 LTR43B 570 + 0 570 34888 232 2 0 42 12 11 20 40 41 224 chain 3056 chr9 138394717 + 39307469 39307855 L1MC2 1988 + 1594 1978 99242 34 331 329 21 chain 108714 chr9 138394717 + 39318104 39319559 THE1C-int 1605 + 124 1599 17215 83 0 3 135 6 7 88 5 12 108 1 5 127 33 39 28 12 6 409 1 2 291 1 6 114 1 0 12 chain 29322 chr9 138394717 + 39349867 39350178 AluYa5 310 + 0 310 42843 123 1 0 187 chain 19743 chr9 138394717 + 39387032 39387293 AluY 311 + 0 261 56736 47 13 19 52 7 0 14 0 1 128 chain 100568 chr9 138394717 + 39399614 39400981 L1PA13 3608 + 1904 3274 18228 48 1 8 54 0 2 8 11 11 371 22 16 505 1 2 192 8 7 32 1 0 52 0 1 61 chain 40310 chr9 138394717 + 39424634 39425173 MLT2A2 560 + 0 560 34441 388 1 2 7 1 0 5 0 11 57 9 15 65 0 4 6 chain 429668 chr9 138394717 + 39426472 39431431 L1PA5 6144 + 1169 6122 4750 1229 0 1 158 0 2 7 40 0 653 0 4 740 0 1 74 0 22 1286 1 2 605 4 8 124 1 0 37 chain 4746 chr9 138394717 + 39466714 39466768 MSTA-int 1630 + 14 68 86984 54 chain 32247 chr9 138394717 + 39508850 39509333 LTR12F 595 + 0 595 40151 76 0 119 15 14 5 70 3 4 106 35 36 164 chain 12936 chr9 138394717 + 39531653 39531862 L1PA8 5853 + 5648 5853 65191 31 2 0 9 6 7 45 2 1 10 1 0 9 2 1 92 chain 31495 chr9 138394717 + 39532102 39532477 THE1A-int 1579 + 0 375 40739 25 0 3 5 3 0 342 chain 16150 chr9 138394717 + 39546793 39547163 THE1B 368 + 0 368 60811 82 64 57 38 57 63 66 16 15 47 chain 42628 chr9 138394717 + 39561774 39562632 MER41A 554 + 0 554 32985 224 0 1 93 0 1 30 8 9 28 307 0 168 chain 27329 chr9 138394717 + 39593277 39593578 AluYg6 310 + 0 299 45788 127 2 0 172 chain 4358 chr9 138394717 + 39635876 39636036 L1MC 810 + 208 368 89118 5 0 2 5 2 0 33 1 0 22 77 78 15 chain 43572 chr9 138394717 + 39647734 39648272 MLT2A2 560 + 3 560 32401 137 0 1 32 0 12 18 0 1 9 1 2 335 0 4 6 chain 3370 chr9 138394717 + 39673755 39673863 MER3 215 + 55 182 96393 14 4 17 23 33 43 9 4 0 21 chain 12317 chr9 138394717 + 39687213 39687368 MER107 203 + 6 156 66268 142 5 0 8 chain 39678 chr9 138394717 + 39703943 39704449 MER41C 542 + 27 542 34907 22 0 1 201 0 7 56 5 6 222 chain 28579 chr9 138394717 + 39804817 39805193 THE1B 368 + 0 368 43986 172 4 3 72 8 1 120 chain 11083 chr9 138394717 + 39832967 39833115 THE1D-int 1627 + 93 247 68438 10 2 5 45 0 3 91 chain 21773 chr9 138394717 + 39835486 39835755 AluSc 308 + 20 290 54132 184 0 1 85 chain 69946 chr9 138394717 + 39835826 39836758 L1PA14 3548 + 656 1572 24006 38 2 0 156 1 0 468 19 0 139 2 3 25 4 5 19 0 4 59 chain 15655 chr9 138394717 + 39868550 39868914 THE1B 368 + 0 368 61461 111 4 5 15 123 128 47 15 13 49 chain 39637 chr9 138394717 + 39897075 39897522 L1P1 4361 + 3549 3996 34935 447 chain 3609 chr9 138394717 + 39982744 39982830 MER45A 178 + 75 162 94344 27 33 34 26 chain 61899 chr9 138394717 + 39983116 39983773 SVA_F 1814 + 1044 1699 25888 133 1 0 5 1 0 517 chain 41808 chr9 138394717 + 39990516 39991133 L1PA8 5853 + 5234 5853 33482 85 0 2 90 1 0 4 10 5 95 2 3 35 4 10 6 0 3 36 2 0 69 3 2 13 1 0 48 2 3 22 1 0 88 chain 194041 chr9 138394717 + 40033600 40035725 L1PA3long 6157 + 4032 6157 9924 2125 chain 58530 chr9 138394717 + 40076487 40077194 L1PA7 6471 + 5758 6465 26807 707 chain 5470 chr9 138394717 + 40132665 40132763 L1MA3 4352 + 4240 4332 83347 14 6 4 24 1 0 6 1 0 29 1 0 11 1 0 4 chain 43106 chr9 138394717 + 40141096 40141590 LTR15 485 + 0 485 32708 343 8 0 138 1 0 4 chain 7055 chr9 138394717 + 40294931 40295150 MSTA-int 1630 + 1382 1605 77420 10 0 7 6 7 0 18 67 65 28 6 5 30 9 16 38 chain 6494 chr9 138394717 + 40318365 40318566 MSTA 426 + 158 366 79376 28 1 0 7 0 2 19 67 64 15 5 0 9 12 26 38 chain 75696 chr9 138394717 + 40338733 40339708 LTR5_Hs 974 + 0 974 22657 293 8 1 165 0 4 105 1 0 88 0 1 17 3 5 97 7 7 191 chain 71998 chr9 138394717 + 40385466 40386599 L1PB1 5432 + 4334 5420 23539 87 0 1 221 5 6 40 1 0 95 32 32 287 30 14 21 1 0 9 2 1 8 2 0 3 2 0 8 2 0 53 2 1 16 2 1 43 1 0 15 3 0 6 16 6 19 12 9 10 2 0 24 1 0 21 1 0 13 1 0 16 chain 7067 chr9 138394717 + 40396806 40396886 MER45C 884 + 88 168 77380 80 chain 26923 chr9 138394717 + 40412303 40412622 AluYk4 311 + 0 303 46375 126 16 0 177 chain 20662 chr9 138394717 + 40419354 40419680 THE1B 368 + 14 368 55551 21 0 16 4 1 0 84 0 4 26 1 0 29 44 54 116 chain 30742 chr9 138394717 + 40419682 40420085 THE1B-int 1605 + 2 403 41359 13 0 2 10 11 6 132 0 1 237 chain 54151 chr9 138394717 + 40428423 40429019 L1PA3long 6157 + 5551 6147 28171 596 chain 94527 chr9 138394717 + 40437462 40439064 L1PA7 6471 + 5061 6324 18961 182 0 1 44 1 0 58 0 1 86 0 3 5 1 4 171 1 0 94 18 22 17 349 0 19 2 0 3 2 0 248 1 2 36 2 3 76 0 1 170 2 3 14 chain 3558 chr9 138394717 + 40461537 40461577 LTR12C 1709 + 1021 1061 94768 40 chain 135121 chr9 138394717 + 40467353 40468823 L1PA2 6032 + 3503 4973 13533 1470 chain 219102 chr9 138394717 + 40515879 40518322 L1PA3long 6157 + 3713 6157 9064 2294 0 1 149 chain 11234 chr9 138394717 + 40603922 40604086 L1MA5 2750 + 2435 2599 68196 129 1 0 4 0 1 4 6 2 7 0 4 13 chain 23720 chr9 138394717 + 40636356 40636703 MLT2A1 477 + 0 385 51251 142 0 1 26 1 5 106 0 25 33 26 34 13 chain 20749 chr9 138394717 + 40665796 40666134 THE1B 368 + 6 368 55436 38 0 15 110 1 0 29 42 52 91 1 4 5 3 0 18 chain 83870 chr9 138394717 + 40726395 40727436 MER11C 1089 + 0 1059 20833 246 0 9 58 0 4 69 1 0 168 0 1 135 0 4 43 7 8 314 chain 72726 chr9 138394717 + 40736437 40737622 L1P3 4156 + 3123 4107 23375 247 0 1 4 1 0 25 0 4 112 0 16 34 3 6 47 225 0 106 0 1 381 chain 223794 chr9 138394717 + 40806402 40808885 L1PA3long 6157 + 3672 6155 8937 2483 chain 529011 chr9 138394717 + 40873600 40879905 L1PA2 6032 + 13 6006 1877 238 8 7 842 0 1 955 315 0 2741 0 1 771 0 1 141 0 1 294 chain 16391 chr9 138394717 + 40886223 40886540 LTR7B 505 + 81 441 60535 24 0 10 56 15 81 15 43 5 6 0 2 82 1 0 26 12 16 37 chain 535257 chr9 138394717 + 40915787 40921920 L1PA3long 6157 + 6 6148 1608 121 4 14 13 26 12 880 1 0 2131 1 0 270 5 8 277 0 1 345 4 6 270 0 4 100 0 3 30 0 2 1655 chain 56315 chr9 138394717 + 40921932 40922586 L1PA4 6152 + 5482 6143 27483 64 1 8 589 chain 107609 chr9 138394717 + 40936481 40937683 L1PA3long 6157 + 4955 6157 17376 1202 chain 4253 chr9 138394717 + 40947923 40948063 Ricksha_c 1012 + 91 216 89809 39 55 45 23 11 6 12 chain 4470 chr9 138394717 + 40985075 40985153 LTR37A 408 + 289 365 88496 28 6 5 13 1 0 30 chain 33571 chr9 138394717 + 41007186 41007588 L1HS 6032 + 722 1122 39025 126 2 0 16 3 0 170 0 3 85 chain 22460 chr9 138394717 + 41023035 41023275 L1PA2 6032 + 4513 4753 53180 240 chain 44613 chr9 138394717 + 41023275 41023764 L1PA2 6032 + 4757 5246 31783 489 chain 7746 chr9 138394717 + 41102277 41102377 MIR 256 + 85 186 75496 44 0 1 56 chain 5081 chr9 138394717 + 41104539 41104594 LTR5A 1029 + 0 55 85243 55 chain 87449 chr9 138394717 + 41105160 41106192 LTR5A 1029 + 0 1029 20141 141 7 6 542 0 2 294 5 1 43 chain 45273 chr9 138394717 + 41107591 41108193 HERVE-int 4064 + 2119 2717 31434 54 4 1 35 9 6 173 0 1 4 1 0 110 0 2 212 chain 542484 chr9 138394717 + 41149964 41155990 L1PA3long 6157 + 4 6156 1178 148 10 11 613 0 128 122 1 0 83 27 0 3788 0 1 758 1 0 10 0 23 451 0 3 9 1 0 4 chain 20552 chr9 138394717 + 41184196 41184449 AluY 311 + 40 294 55709 86 0 1 167 chain 92611 chr9 138394717 + 41222513 41223567 L1P1 4361 + 2436 3499 19257 811 1 9 200 0 1 42 chain 37352 chr9 138394717 + 41235999 41236454 LTR2 463 + 7 463 36516 215 0 5 3 5 0 151 0 1 81 chain 133025 chr9 138394717 + 41314617 41316118 L1PA4 6152 + 3839 5340 13737 1501 chain 33697 chr9 138394717 + 41384971 41385468 MER4E1 777 + 317 751 38927 219 77 14 201 chain 29857 chr9 138394717 + 41421138 41421571 LTR12F 595 + 0 595 42176 72 0 167 85 1 0 38 9 10 144 5 9 42 9 0 28 chain 5141 chr9 138394717 + 41452550 41452621 MER67A 545 + 453 525 84957 25 3 4 43 chain 163483 chr9 138394717 + 41470104 41472139 L1PA7 6471 + 4424 6469 11513 148 2 5 248 1 2 4 1 0 32 0 3 17 2 3 362 6 13 359 3 1 82 1 0 254 8 12 492 5 0 8 chain 19418 chr9 138394717 + 41549011 41549326 THE1B 368 + 10 345 57113 34 0 15 46 21 27 16 26 25 172 chain 221403 chr9 138394717 + 41552104 41554547 L1PA3long 6157 + 3709 6152 8994 2443 chain 44929 chr9 138394717 + 41563331 41563901 L1PA7 6471 + 5847 6430 31615 360 0 5 21 1 5 54 14 18 120 chain 14304 chr9 138394717 + 41563901 41564089 L1PA8 5853 + 5646 5834 63190 36 1 0 50 0 3 5 2 1 19 1 0 74 chain 69983 chr9 138394717 + 41569276 41570037 L1PA2 6032 + 5265 6026 23998 761 chain 26300 chr9 138394717 + 41594992 41595276 AluYb9 318 + 0 314 47268 155 0 30 129 chain 12119 chr9 138394717 + 41596230 41596375 L1PA6 6164 + 6017 6162 66636 145 chain 121116 chr9 138394717 + 41621836 41623187 L1PA3long 6157 + 4805 6157 15330 1013 0 2 191 1 0 146 chain 3064 chr9 138394717 + 41635194 41635388 MER70-int 1005 + 41 225 99187 36 141 131 17 chain 27161 chr9 138394717 + 41702331 41702701 THE1A 353 + 0 353 46024 110 1 0 194 25 9 40 chain 7599 chr9 138394717 + 41756727 41756830 LTR19A 502 + 102 241 75874 71 0 37 20 1 0 11 chain 5935 chr9 138394717 + 41773058 41773128 MER83C 372 + 295 365 81340 70 chain 24251 chr9 138394717 + 41834670 41834966 AluSp 311 + 0 291 50413 122 5 0 169 chain 66012 chr9 138394717 + 41945004 41945760 L1PA5 6144 + 5372 6130 24955 690 11 13 55 chain 21324 chr9 138394717 + 41967164 41967527 THE1B 368 + 0 368 54730 64 1 0 105 1 0 21 59 65 43 15 16 54 chain 3489 chr9 138394717 + 41999578 41999616 MLT2D 439 + 395 433 95322 38 chain 491571 chr9 138394717 + 42036464 42042241 L1PA5 6144 + 397 6141 3383 772 85 0 134 0 1 504 0 1 488 0 1 7 2 1 192 0 2 175 0 2 80 0 36 110 0 4 257 2 1 119 0 1 645 1 2 14 0 1 1733 0 2 314 0 4 96 1 0 35 1 0 10 chain 440175 chr9 138394717 + 42115257 42120708 L1PA4 6152 + 6 5877 4575 90 0 525 349 0 1 205 9 0 306 0 2 6 0 195 635 2 1 850 1 0 184 0 1 730 0 1 208 304 1 502 2 7 490 1 0 9 0 1 107 0 4 10 1 0 296 0 1 154 chain 38949 chr9 138394717 + 42144966 42145536 LTR43B 570 + 0 570 35394 232 2 0 42 71 72 125 0 1 98 chain 3056 chr9 138394717 + 42148077 42148463 L1MC2 1988 + 1594 1978 99241 34 331 329 21 chain 20015 chr9 138394717 + 42215118 42215378 AluY 311 + 0 261 56370 47 13 19 52 6 0 14 0 1 128 chain 17295 chr9 138394717 + 42229333 42229732 L1PREC2 3366 + 2615 2963 59468 102 2 0 34 3 1 47 6 5 39 126 83 27 3 0 10 chain 18991 chr9 138394717 + 42249126 42249447 MER4D1 891 + 315 654 57563 52 17 0 8 7 25 12 1 0 18 1 0 6 9 11 114 0 10 27 3 10 46 chain 39661 chr9 138394717 + 42249499 42250037 MLT2A2 560 + 0 560 34917 235 0 1 152 14 25 57 9 15 65 0 4 6 chain 483664 chr9 138394717 + 42250514 42256287 L1PA5 6144 + 0 6122 3564 120 0 14 114 1 5 560 24 356 265 0 2 962 0 1 152 0 15 25 53 0 476 2 1 149 0 4 742 0 1 74 0 22 1211 1 5 14 14 14 42 1 2 605 4 8 124 1 0 37 chain 12653 chr9 138394717 + 42286366 42286574 L1PA8 5853 + 5648 5853 65716 31 1 0 10 5 6 45 2 1 10 1 0 9 2 1 48 1 0 4 0 1 39 chain 29597 chr9 138394717 + 42286810 42287186 THE1C-int 1605 + 0 429 42488 110 0 54 66 2 1 198 chain 42615 chr9 138394717 + 42318415 42319275 MER41A 554 + 0 554 32994 224 0 1 93 0 1 30 8 9 28 309 0 168 chain 42923 chr9 138394717 + 42404084 42404622 MLT2A2 560 + 3 560 32824 137 0 1 32 0 8 7 0 1 6 0 3 6 0 1 8 1 2 335 0 4 6 chain 28513 chr9 138394717 + 42405478 42405785 AluYk12 309 + 0 307 44103 307 chain 15592 chr9 138394717 + 42443571 42443786 MER107 203 + 6 203 61543 156 3 0 14 15 0 27 chain 3557 chr9 138394717 + 42445676 42445714 L1PA17 2846 + 2655 2693 94786 38 chain 28935 chr9 138394717 + 42452954 42453256 AluYa8 305 + 0 302 43425 302 chain 39342 chr9 138394717 + 42462167 42462673 MER41C 542 + 27 542 35120 22 0 1 201 0 7 56 5 6 222 chain 16997 chr9 138394717 + 42503218 42503453 LTR8 732 + 487 729 59806 50 11 15 164 0 3 10 chain 94381 chr9 138394717 + 42633454 42634774 L1PB 1623 + 106 1391 18984 6 1 0 5 1 0 50 0 2 19 7 4 76 2 1 103 2 0 26 2 1 58 20 0 324 16 19 189 0 1 309 23 11 81 chain 108640 chr9 138394717 + 42682060 42683519 THE1C-int 1605 + 124 1599 17227 83 0 3 135 6 7 88 5 12 108 1 5 127 0 5 5 1 2 55 12 6 525 1 0 97 5 1 79 1 6 82 0 2 30 1 0 12 chain 175826 chr9 138394717 + 42687034 42690096 L1PA14 3548 + 656 3485 10788 193 1 0 469 19 0 115 14 13 11 2 3 27 0 3 19 0 4 57 348 41 6 2 0 236 0 3 15 16 14 86 2 0 173 1 0 59 7 5 136 6 4 174 14 14 25 0 144 19 6 5 185 1 2 22 3 1 9 10 5 21 11 10 14 13 9 96 0 1 5 13 9 13 2 0 6 1 0 77 16 15 13 16 1 32 4 5 51 1 0 11 5 1 36 4 2 9 1 0 8 17 16 39 11 5 8 1 0 19 chain 5033 chr9 138394717 + 42701582 42701645 Tigger6a 1079 + 902 966 85500 34 0 1 29 chain 17842 chr9 138394717 + 42719680 42720044 THE1B 368 + 0 368 58837 111 11 12 39 92 97 47 15 13 49 chain 3452 chr9 138394717 + 42736842 42736886 MER52D 1964 + 1105 1148 95641 9 1 0 34 chain 28261 chr9 138394717 + 42779201 42779577 THE1C 375 + 0 374 44469 115 8 5 191 3 5 33 1 0 25 chain 47949 chr9 138394717 + 42919160 42919677 L1PA2 6032 + 5220 5737 30315 517 chain 10520 chr9 138394717 + 42924885 42925087 MSTA-int 1630 + 23 230 69381 82 35 40 24 19 19 42 chain 4310 chr9 138394717 + 42943410 42943612 MSTA 426 + 158 366 89443 24 140 146 38 chain 74449 chr9 138394717 + 42965006 42965981 LTR5_Hs 974 + 0 974 22976 284 11 4 171 0 4 105 1 0 88 0 1 12 8 10 97 7 7 191 chain 33803 chr9 138394717 + 43004233 43004615 L1PA3long 6157 + 5775 6157 38846 382 chain 11621 chr9 138394717 + 43005856 43006195 L1PREC2 3366 + 2630 2944 67534 87 1 0 7 1 0 8 24 21 33 21 20 33 18 14 14 77 62 15 chain 71955 chr9 138394717 + 43011847 43012980 L1PB1 5432 + 4334 5420 23553 87 0 1 221 5 6 40 1 0 95 32 32 286 31 15 18 1 0 12 2 1 8 2 0 3 2 0 8 2 0 52 1 0 18 2 1 43 1 0 15 3 0 6 16 6 19 12 9 10 2 0 24 1 0 21 1 0 13 1 0 16 chain 7067 chr9 138394717 + 43023164 43023244 MER45C 884 + 88 168 77379 80 chain 26701 chr9 138394717 + 43038658 43038971 AluYk4 311 + 0 305 46681 126 8 0 179 chain 20662 chr9 138394717 + 43045689 43046015 THE1B 368 + 14 368 55550 21 0 16 4 1 0 84 0 4 26 1 0 29 44 54 116 chain 30925 chr9 138394717 + 43046015 43046420 THE1B-int 1605 + 0 403 41195 15 0 2 10 5 0 131 7 8 237 chain 96587 chr9 138394717 + 43063555 43065161 L1PA7 6471 + 5061 6324 18705 182 0 1 44 1 0 58 0 1 86 0 3 5 1 4 171 1 0 94 19 22 17 349 0 19 2 0 3 2 0 365 0 1 187 chain 99727 chr9 138394717 + 43077527 43078611 L1PA2 6032 + 4947 6031 18331 1084 chain 3358 chr9 138394717 + 43089881 43089919 LTR12C 1709 + 1021 1059 96501 38 chain 82007 chr9 138394717 + 43095783 43096800 L1PA10 4194 + 3148 4161 21239 968 8 5 29 1 0 11 chain 220272 chr9 138394717 + 43144180 43146618 L1PA3long 6157 + 3719 6157 9037 2438 chain 22219 chr9 138394717 + 43162959 43163235 L1P1 4361 + 4051 4325 53525 100 2 1 153 1 0 20 chain 92695 chr9 138394717 + 43168442 43169487 L1PA3long 6157 + 4307 5352 19236 1045 chain 20284 chr9 138394717 + 43296028 43296339 THE1B 368 + 6 341 56035 38 0 15 110 1 0 29 41 51 92 chain 17644 chr9 138394717 + 60762692 60762965 Tigger5 388 + 107 364 59074 29 11 0 99 1 0 26 2 0 10 1 0 27 2 0 15 1 2 49 chain 39697 chr9 138394717 + 60863068 60863640 LTR43B 570 + 0 570 34893 232 2 0 42 12 11 20 40 41 224 chain 3056 chr9 138394717 + 60866171 60866557 L1MC2 1988 + 1594 1978 99240 34 331 329 21 chain 110296 chr9 138394717 + 60876815 60878270 THE1C-int 1605 + 124 1599 17039 83 0 3 135 6 7 88 5 12 108 1 5 127 33 39 21 6 0 422 1 2 291 1 6 114 1 0 12 chain 28898 chr9 138394717 + 60908557 60908862 AluYa5 310 + 0 304 43479 123 1 0 181 chain 19874 chr9 138394717 + 60945838 60946099 AluY 311 + 0 261 56572 47 13 19 52 7 0 14 0 1 128 chain 100670 chr9 138394717 + 60958419 60959786 L1PA13 3608 + 1904 3274 18220 48 1 8 54 0 2 8 11 11 371 22 16 505 1 2 192 8 7 32 1 0 52 0 1 61 chain 40188 chr9 138394717 + 60983377 60983916 MLT2A2 560 + 0 560 34525 388 1 2 7 1 0 5 0 11 57 9 15 65 0 4 6 chain 429668 chr9 138394717 + 60985215 60990174 L1PA5 6144 + 1169 6122 4749 1229 0 1 158 0 2 7 40 0 651 0 4 742 0 1 74 0 22 1286 1 2 605 4 8 124 1 0 37 chain 17209 chr9 138394717 + 61088386 61088581 L1PA5 6144 + 5098 5293 59565 195 chain 71794 chr9 138394717 + 61088582 61089412 L1PA5 6144 + 5298 6130 23595 762 13 15 55 chain 39575 chr9 138394717 + 61138661 61139233 LTR43B 570 + 0 570 34978 232 2 0 42 12 11 20 40 41 224 chain 110560 chr9 138394717 + 61152735 61154190 THE1C-int 1605 + 124 1599 17002 83 0 3 135 6 7 88 5 12 108 1 5 127 33 39 21 6 0 422 1 2 291 1 6 114 1 0 12 chain 20005 chr9 138394717 + 61221212 61221473 AluY 311 + 0 261 56378 47 13 19 52 7 0 14 0 1 128 chain 4780 chr9 138394717 + 61291428 61291489 MER67D 511 + 59 120 86797 61 chain 4415 chr9 138394717 + 61387514 61387577 L1MB3 1562 + 1492 1555 88808 31 1 0 21 0 1 10 chain 7247 chr9 138394717 + 61585820 61585909 L1MB8 1703 + 1468 1557 76823 89 chain 7510 chr9 138394717 + 61642388 61642492 HY1 111 + 6 111 76104 65 7 8 32 chain 9324 chr9 138394717 + 61703857 61703982 MER4E 760 + 638 760 71867 36 3 0 86 chain 135618 chr9 138394717 + 61722456 61724041 L1PA4 6152 + 3926 5516 13474 422 1 5 93 0 1 572 0 1 274 2 0 48 0 1 173 chain 26391 chr9 138394717 + 61805233 61805518 AluYb9 318 + 0 315 47134 154 0 30 131 chain 12119 chr9 138394717 + 61806472 61806617 L1PA6 6164 + 6017 6162 66635 145 chain 121059 chr9 138394717 + 61831991 61833342 L1PA3long 6157 + 4805 6157 15338 1017 0 2 187 1 0 146 chain 27161 chr9 138394717 + 61914346 61914716 THE1A 353 + 0 353 46023 110 1 0 194 25 9 40 chain 109544 chr9 138394717 + 61914716 61916286 THE1A-int 1579 + 0 1572 17118 632 96 98 19 38 39 403 5 6 4 1 0 166 1 0 205 chain 8888 chr9 138394717 + 61968782 61968946 LTR19A 502 + 102 502 72803 69 3 40 19 1 0 11 19 219 42 chain 5935 chr9 138394717 + 61984404 61984474 MER83C 372 + 295 365 81339 70 chain 514115 chr9 138394717 + 62003388 62009239 L1PA5 6144 + 0 5875 2565 36 0 1 1104 1 6 149 0 1 62 0 19 152 1 0 405 1 0 1240 0 1 89 0 4 407 5 0 203 1 0 509 1 0 17 0 1 239 0 1 1229 chain 103206 chr9 138394717 + 62024710 62026192 L1PB2 3958 + 482 1962 17931 280 15 14 30 3 5 101 1 0 4 17 18 63 1 0 4 0 2 219 5 6 27 0 1 56 0 1 30 9 14 225 13 1 15 8 6 51 1 0 137 1 4 166 chain 6450 chr9 138394717 + 62066364 62066700 MLT1C 463 + 73 406 79515 51 6 0 13 91 82 27 126 138 22 chain 34394 chr9 138394717 + 62115276 62115652 L1PA2 6032 + 5656 6031 38433 360 1 0 15 chain 151249 chr9 138394717 + 62256502 62258381 L1PA7 6471 + 4424 6318 12271 148 2 5 248 1 2 4 1 0 32 0 3 17 2 3 362 6 13 359 3 1 82 1 0 254 8 12 349 chain 9468 chr9 138394717 + 62267599 62267705 SVA_F 1814 + 1703 1811 71563 99 0 2 7 chain 45073 chr9 138394717 + 62347690 62348275 L1PA7 6471 + 5847 6430 31543 360 0 5 21 1 5 54 28 17 121 chain 14786 chr9 138394717 + 62348275 62348468 L1PA8 5853 + 5646 5839 62546 36 1 0 50 0 3 5 2 1 19 1 0 79 chain 70622 chr9 138394717 + 62353647 62354411 L1PA2 6032 + 5265 6029 23838 764 chain 18890 chr9 138394717 + 62371699 62371954 THE1B 368 + 121 368 57648 51 4 3 72 8 1 120 chain 93943 chr9 138394717 + 62440899 62442643 L1PB 1623 + 106 1585 19046 6 1 0 5 1 0 50 0 2 19 7 4 76 2 1 103 2 0 26 2 1 58 20 0 324 16 19 189 0 1 307 288 81 35 2 1 37 122 93 10 3 0 21 2 0 10 chain 172505 chr9 138394717 + 62494447 62497384 L1PA14 3548 + 656 3365 10975 193 1 0 469 19 0 115 14 13 11 2 3 27 0 3 19 0 4 57 354 41 6 2 0 236 0 3 15 16 14 86 2 0 173 1 0 59 7 5 136 6 4 174 14 14 25 0 144 19 6 5 185 1 2 22 3 1 9 10 5 21 11 10 14 13 9 96 0 1 5 13 9 13 2 0 6 1 0 77 29 13 48 4 5 51 1 0 11 5 1 22 chain 28998 chr9 138394717 + 62584936 62585313 THE1C 375 + 0 375 43322 115 8 5 191 3 5 34 1 0 25 chain 17644 chr9 138394717 + 62633931 62634204 Tigger5 388 + 107 364 59073 29 11 0 99 1 0 26 2 0 10 1 0 27 2 0 15 1 2 49 chain 98420 chr9 138394717 + 62660574 62661775 L1P3 4156 + 0 1191 18489 57 7 0 194 1 0 71 1 0 85 0 2 19 1 0 185 11 9 569 chain 29986 chr9 138394717 + 62709222 62709540 AluYb9 318 + 0 317 42070 132 1 0 185 chain 28819 chr9 138394717 + 62742464 62742771 AluYb8 318 + 1 308 43595 307 chain 38491 chr9 138394717 + 62800850 62801305 LTR2 463 + 7 463 35716 374 0 1 81 chain 32283 chr9 138394717 + 62940980 62941420 L1PA8 5853 + 5328 5763 40125 236 2 1 43 2 0 70 2 1 8 2 0 24 3 5 24 2 1 22 chain 28097 chr9 138394717 + 62950037 62950413 THE1C 375 + 0 374 44722 115 8 5 187 7 9 33 1 0 25 chain 32007 chr9 138394717 + 63030759 63031126 L1PA5 6144 + 5777 6144 40339 367 chain 75541 chr9 138394717 + 63088651 63089474 L1PA3long 6157 + 5333 6156 22709 823 chain 96044 chr9 138394717 + 63157611 63158655 L1PA2 6032 + 4983 6028 18771 196 0 1 848 chain 108090 chr9 138394717 + 63187465 63188790 L1P3 4156 + 2638 3956 17311 106 28 18 687 0 5 358 0 1 20 3 0 123 chain 31285 chr9 138394717 + 63258208 63258611 THE1B-int 1605 + 2 403 40908 13 0 2 10 5 0 138 0 1 237 chain 53857 chr9 138394717 + 63263938 63264536 L1PA3long 6157 + 5551 6149 28268 598 chain 95614 chr9 138394717 + 63272986 63274591 L1PA7 6471 + 5061 6324 18831 182 0 1 44 1 0 58 0 1 86 0 3 5 1 4 171 2 0 94 18 22 17 349 0 19 2 0 3 2 0 248 1 2 115 0 1 187 chain 135121 chr9 138394717 + 63302891 63304361 L1PA2 6032 + 3503 4973 13532 1470 chain 220473 chr9 138394717 + 63351337 63353778 L1PA3long 6157 + 3713 6157 9029 708 0 3 1733 chain 11234 chr9 138394717 + 63403149 63403313 L1MA5 2750 + 2435 2599 68195 129 1 0 4 0 1 4 6 2 7 0 4 13 chain 23720 chr9 138394717 + 63435578 63435925 MLT2A1 477 + 0 385 51250 142 0 1 26 1 5 106 0 25 33 26 34 13 chain 20749 chr9 138394717 + 63465197 63465535 THE1B 368 + 6 368 55435 38 0 15 110 1 0 29 42 52 91 1 4 5 3 0 18 chain 3609 chr9 138394717 + 63581025 63581111 MER45A 178 + 75 162 94343 27 33 34 26 chain 43631 chr9 138394717 + 63587964 63588575 L1PA8 5853 + 5234 5853 32364 84 0 2 196 1 2 35 4 10 6 0 3 37 2 0 68 3 2 13 1 0 48 2 3 22 1 0 88 chain 193097 chr9 138394717 + 63630204 63632328 L1PA3long 6157 + 4032 6155 9968 1872 1 0 251 chain 50359 chr9 138394717 + 63672464 63673085 L1PA7 6471 + 5755 6373 29431 5 3 0 613 chain 5348 chr9 138394717 + 63730616 63730714 L1MA3 4352 + 4240 4332 83962 14 6 4 24 1 0 6 1 0 29 1 0 11 1 0 4 chain 42955 chr9 138394717 + 63739037 63739531 LTR15 485 + 0 485 32802 343 8 0 138 1 0 4 chain 20344 chr9 138394717 + 63742675 63742908 L1PA3long 6157 + 5868 6101 55955 233 chain 30523 chr9 138394717 + 63759899 63760255 L1PA5 6144 + 5785 6140 41541 36 1 0 319 chain 22437 chr9 138394717 + 63773990 63774259 L1PA6 6164 + 5890 6159 53220 269 chain 463349 chr9 138394717 + 63787281 63793191 L1PA6 6164 + 0 6160 4041 42 15 17 328 47 48 156 1 2 179 0 1 14 0 17 458 0 1 331 11 11 83 0 1 353 2 1 96 0 1 30 0 206 375 0 1 385 0 7 45 0 2 302 1 0 557 8 9 120 0 1 16 0 8 496 0 1 76 0 1 461 1 0 48 9 1 29 0 7 80 0 1 605 0 11 6 11 0 133 chain 109819 chr9 138394717 + 63795631 63796897 L1PA4 6152 + 4250 5517 17094 414 11 12 841 chain 3065 chr9 138394717 + 63836590 63836622 tRNA-Arg-CGY_ 50 + 7 39 99147 32 chain 433953 chr9 138394717 + 63844628 63849586 L1PA3long 6157 + 1267 6157 4688 528 2 1 320 0 1 141 0 2 9 2 0 174 70 0 80 1 0 769 0 1 380 1 2 1630 1 2 850 chain 13466 chr9 138394717 + 63863528 63863779 L1PA16 3655 + 3385 3619 64365 30 5 6 142 16 14 14 28 12 16 chain 8920 chr9 138394717 + 63896388 63896583 MER30 238 + 3 238 72739 14 19 41 28 24 44 68 12 10 30 chain 267069 chr9 138394717 + 63913382 63916426 L1HS 6032 + 3 3047 7783 254 1 0 479 1 2 2309 chain 538641 chr9 138394717 + 63979767 63985830 L1PA3long 6157 + 4 6156 1419 148 10 11 42 3 4 413 0 1 92 22 8 54 2 130 119 4 3 80 27 0 1141 0 1 3405 1 0 500 chain 182768 chr9 138394717 + 64090747 64092746 L1PA2 6032 + 4031 6032 10450 125 0 1 231 1 2 1642 chain 131486 chr9 138394717 + 64100302 64101940 SVA_C 1631 + 6 1631 13873 15 18 0 161 0 2 453 4 5 19 0 3 44 14 11 128 70 78 30 1 0 46 4 3 617 4 0 10 chain 3234 chr9 138394717 + 64101183 64101221 SVA_C 1631 + 559 597 97629 38 chain 7055 chr9 138394717 + 64441156 64441375 MSTA-int 1630 + 1382 1605 77419 10 0 7 6 7 0 18 67 65 28 6 5 30 9 16 38 chain 6494 chr9 138394717 + 64458393 64458594 MSTA 426 + 158 366 79375 28 1 0 7 0 2 19 67 64 15 5 0 9 12 26 38 chain 75432 chr9 138394717 + 64478770 64479744 LTR5_Hs 974 + 0 974 22735 293 8 1 165 0 4 43 0 1 61 1 0 88 0 1 17 3 5 97 7 7 191 chain 32359 chr9 138394717 + 64517918 64518290 L1PA3long 6157 + 5775 6157 40070 156 0 10 216 chain 71564 chr9 138394717 + 64525528 64526663 L1PB1 5432 + 4334 5420 23644 87 0 1 221 5 6 40 1 0 95 32 32 287 32 14 17 1 0 13 2 1 8 2 0 3 2 0 8 2 0 53 2 1 16 2 1 43 1 0 15 3 0 6 16 6 19 12 9 10 2 0 24 1 0 21 1 0 13 1 0 16 chain 7067 chr9 138394717 + 64536871 64536951 MER45C 884 + 88 168 77378 80 chain 31202 chr9 138394717 + 64559745 64560148 THE1B-int 1605 + 2 403 40971 13 0 2 10 5 0 138 0 1 237 chain 54407 chr9 138394717 + 64568489 64569087 L1PA3long 6157 + 5551 6149 28083 598 chain 96529 chr9 138394717 + 64577526 64579131 L1PA7 6471 + 5061 6324 18713 182 0 1 44 1 0 58 0 1 86 0 3 5 1 4 171 1 0 94 20 24 15 349 0 19 2 0 3 2 0 365 0 1 187 chain 3680 chr9 138394717 + 64601630 64601670 LTR12C 1709 + 997 1037 93740 40 chain 220792 chr9 138394717 + 64655850 64658294 L1PA3long 6157 + 3713 6157 9021 2444 chain 92210 chr9 138394717 + 64676301 64677343 L1PA3long 6157 + 4307 5349 19310 1042 chain 11234 chr9 138394717 + 64727162 64727326 L1MA5 2750 + 2435 2599 68194 129 1 0 4 0 1 4 6 2 7 0 4 13 chain 24295 chr9 138394717 + 64759568 64759915 MLT2A1 477 + 0 385 50336 142 0 1 26 1 5 106 0 25 40 19 27 13 chain 83315 chr9 138394717 + 64849858 64850900 MER11C 1089 + 0 1059 20960 246 0 9 58 0 4 69 1 0 168 0 1 135 0 4 43 7 8 188 1 0 126 chain 72627 chr9 138394717 + 64860047 64861229 L1P3 4156 + 3123 4107 23393 247 0 1 4 1 0 25 0 4 112 0 16 34 3 6 48 222 0 105 0 1 381 chain 222175 chr9 138394717 + 64927214 64929684 L1PA3long 6157 + 3672 6142 8977 2470 chain 538355 chr9 138394717 + 65061993 65068014 L1PA2 6032 + 1 6024 1435 246 0 1 168 1 0 326 1 0 228 0 1 45 0 3 95 0 1 9 2 1 1066 1 0 35 1 6 663 1 0 186 6 0 737 0 1 12 0 1 2192 chain 219733 chr9 138394717 + 65161054 65163497 L1PA3long 6157 + 3713 6157 9050 233 0 1 2210 chain 90665 chr9 138394717 + 65181494 65182537 L1PA3long 6157 + 4307 5349 19559 156 3 2 884 chain 24173 chr9 138394717 + 65245057 65245404 MLT2A1 477 + 0 385 50537 142 0 1 26 1 5 106 0 25 40 19 27 13 chain 22093 chr9 138394717 + 65273163 65273501 THE1B 368 + 6 368 53710 38 0 15 110 1 0 29 42 52 118 chain 542682 chr9 138394717 + 65306109 65312174 L1PA3long 6157 + 4 6156 1164 148 10 11 42 3 4 506 22 8 53 0 128 118 1 0 84 27 0 4550 1 0 500 chain 5974 chr9 138394717 + 65417065 65417368 MER51A 677 + 346 585 81180 15 3 4 37 202 137 46 chain 4537 chr9 138394717 + 65505434 65505486 MER21B 843 + 20 72 88127 52 chain 7247 chr9 138394717 + 65516930 65517019 L1MB8 1703 + 1468 1557 76822 89 chain 7379 chr9 138394717 + 65573389 65573493 HY1 111 + 6 111 76447 65 7 8 32 chain 22320 chr9 138394717 + 65654019 65654355 THE1C 375 + 0 373 53380 23 0 1 40 10 19 31 8 6 159 0 9 37 12 32 16 chain 22560 chr9 138394717 + 65664264 65664595 THE1B 368 + 0 356 53028 44 0 15 15 0 1 97 4 3 16 0 2 8 31 39 116 chain 118899 chr9 138394717 + 65664607 65666171 THE1B-int 1605 + 0 1605 15726 113 0 3 314 1 26 297 8 17 144 0 24 450 0 1 4 0 1 91 7 0 21 16 0 88 1 2 9 chain 21170 chr9 138394717 + 65666171 65666494 THE1B 368 + 0 368 54923 40 1 16 112 1 0 30 35 45 81 5 26 18 chain 9988 chr9 138394717 + 65725033 65725185 Tigger3c 601 + 373 520 70449 24 16 15 14 4 0 94 chain 334561 chr9 138394717 + 65726007 65730493 L1PB1 5432 + 59 5419 6148 81 1 0 260 2 1 99 0 7 34 7 4 382 0 2 101 0 9 193 0 1 16 9 17 26 0 1 111 13 0 331 2 1 39 1 3 253 0 1 56 1 0 99 0 6 53 1 0 6 7 8 30 0 2 82 0 4 43 0 11 19 0 9 33 7 0 89 0 3 26 0 3 49 0 1 108 0 4 65 2 1 116 0 5 72 1 4 84 0 1 41 2 832 68 1 0 352 0 16 121 8 7 64 4 7 180 1 0 291 15 11 24 1 0 8 1 0 11 5 1 9 2 0 53 3 1 15 1 0 41 8 7 12 14 1 25 6 5 5 1 0 14 2 0 24 1 0 19 0 7 23 chain 2599 chr9 138394717 + 65776940 65776972 MLT2A1 477 + 445 477 103004 32 chain 32007 chr9 138394717 + 65803929 65804296 L1PA5 6144 + 5777 6144 40338 367 chain 36915 chr9 138394717 + 65839319 65841027 L1PA3long 6157 + 4465 6156 36801 868 17 0 823 chain 95855 chr9 138394717 + 65908962 65910005 L1PA2 6032 + 4983 6026 18787 1043 chain 107948 chr9 138394717 + 65938859 65940191 L1P3 4156 + 2638 3956 17334 106 47 35 1033 0 1 20 3 0 123 chain 4168 chr9 138394717 + 66064082 66064162 THE1D-int 1627 + 992 1111 90333 51 16 55 13 chain 3351 chr9 138394717 + 66070249 66070319 THE1D-int 1627 + 951 1023 96595 22 17 19 31 chain 8059 chr9 138394717 + 66108045 66108257 L1MB8 1703 + 1310 1523 74728 44 1 0 26 92 93 23 0 1 26 chain 66866 chr9 138394717 + 66128850 66129617 L1PA5 6144 + 5367 6135 24732 621 6 7 140 chain 5030 chr9 138394717 + 66191403 66191481 MER11A 1151 + 154 230 85517 45 5 3 28 chain 78757 chr9 138394717 + 66200169 66201217 MER11C 1089 + 0 1063 21929 247 0 9 57 0 4 68 1 0 178 16 15 112 15 18 29 0 1 127 0 1 54 1 0 48 1 0 69 0 1 25 chain 122801 chr9 138394717 + 66226906 66228294 L1PA4 6152 + 3839 5227 15057 1388 chain 33638 chr9 138394717 + 66296133 66296627 MER4E1 777 + 317 748 38971 219 77 14 198 chain 31801 chr9 138394717 + 66332633 66333090 LTR12F 595 + 0 595 40495 51 1 0 4 0 1 16 0 143 109 1 0 38 9 10 145 4 8 42 9 0 28 chain 5141 chr9 138394717 + 66364053 66364124 MER67A 545 + 453 525 84956 25 3 4 43 chain 151398 chr9 138394717 + 66381939 66383818 L1PA7 6471 + 4424 6318 12260 148 2 5 248 1 2 4 1 0 32 0 3 17 2 3 362 6 13 359 3 1 89 1 0 247 8 12 349 chain 29792 chr9 138394717 + 66619456 66619833 THE1C 375 + 0 375 42241 125 3 0 186 3 5 34 1 0 25 chain 5400 chr9 138394717 + 66631750 66631923 MER52A 1651 + 0 189 83701 13 0 3 46 91 104 23 chain 23959 chr9 138394717 + 66634643 66635114 LTR19A 502 + 0 496 50853 33 6 5 18 9 4 93 11 0 20 0 37 11 1 38 16 44 6 69 0 8 72 39 37 29 chain 17439 chr9 138394717 + 66668449 66668722 Tigger5 388 + 107 364 59307 29 11 0 99 1 0 26 2 0 10 1 0 27 2 0 15 1 2 49 chain 98645 chr9 138394717 + 66695105 66696306 L1P3 4156 + 0 1191 18457 57 7 0 194 1 0 71 1 0 85 0 2 19 1 0 185 11 9 569 chain 29400 chr9 138394717 + 66743753 66744066 AluYb9 318 + 0 312 42738 132 1 0 180 chain 10609 chr9 138394717 + 66749758 66749894 L1PB4 2604 + 2386 2522 69210 136 chain 4331 chr9 138394717 + 66790507 66790567 MER39 703 + 329 390 89285 39 1 2 20 chain 28707 chr9 138394717 + 66836746 66837052 AluYa5 310 + 0 303 43788 132 3 0 171 chain 22430 chr9 138394717 + 66883652 66883896 L1PA2 6032 + 5785 6029 53231 244 chain 22197 chr9 138394717 + 66940808 66941102 THE1B 368 + 0 299 53560 169 1 0 29 0 3 9 0 4 18 1 0 7 2 1 38 0 1 20 chain 30588 chr9 138394717 + 66975488 66975825 L1PA3long 6157 + 5819 6156 41478 337 chain 4768 chr9 138394717 + 66975867 66975921 MLT1B 390 + 336 390 86870 54 chain 5175 chr9 138394717 + 67020303 67020375 MER67B 652 + 152 223 84796 60 1 0 11 chain 4415 chr9 138394717 + 67118061 67118124 L1MB3 1562 + 1492 1555 88807 31 1 0 21 0 1 10 chain 9973 chr9 138394717 + 67231413 67231537 MER47A 366 + 124 248 70478 124 chain 3582 chr9 138394717 + 67273181 67273308 L1MB4 1306 + 783 893 94569 28 61 45 6 1 0 31 chain 139361 chr9 138394717 + 67324499 67326286 LTR12C 1709 + 0 1709 13149 104 0 1 707 0 40 224 123 0 35 1 0 5 3 1 107 0 4 248 0 3 230 chain 9864 chr9 138394717 + 67325534 67325653 LTR12C 1709 + 916 1076 40346 38 0 41 81 chain 13581 chr9 138394717 + 67377973 67378186 L1PA8 5853 + 5638 5847 64194 39 1 0 16 8 7 40 2 1 19 14 13 74 chain 29173 chr9 138394717 + 67383793 67384100 AluYb8 318 + 1 308 43092 307 chain 43883 chr9 138394717 + 67404153 67404659 MER9a2 513 + 0 513 32202 427 0 7 79 chain 29369 chr9 138394717 + 67407945 67408331 LTR7 482 + 0 468 42785 86 0 50 88 7 39 42 0 1 8 1 0 154 chain 3726 chr9 138394717 + 67412394 67412460 MER39 703 + 572 643 93427 17 11 16 38 chain 6099 chr9 138394717 + 67427549 67427625 MER20 218 + 0 76 80732 76 chain 54951 chr9 138394717 + 67429928 67430632 L1PA8 5853 + 5162 5853 27892 353 0 1 48 1 0 44 2 0 71 1 0 9 1 0 52 2 1 19 2 1 34 7 0 58 chain 19911 chr9 138394717 + 67436712 67436953 L1PA5 6144 + 5900 6144 56506 102 1 4 138 chain 24291 chr9 138394717 + 67440402 67440691 L1P4 1494 + 906 1195 50341 289 chain 3493 chr9 138394717 + 67456276 67456313 L1MB5 1630 + 1192 1229 95289 37 chain 32513 chr9 138394717 + 67465546 67466353 LTR12F 595 + 0 595 39933 103 0 1 31 4 0 7 15 83 10 24 0 51 0 64 161 317 0 84 chain 11716 chr9 138394717 + 67467404 67467544 LTR12F 595 + 445 585 67374 140 chain 34838 chr9 138394717 + 67467868 67468324 L1PA8 5853 + 5383 5853 38128 138 0 2 41 1 0 39 0 7 69 1 0 9 1 0 52 2 1 19 1 0 34 5 15 44 chain 5831 chr9 138394717 + 67498502 67498592 L1MA8 2339 + 2174 2256 81779 22 6 0 40 2 0 20 chain 117195 chr9 138394717 + 67564001 67565987 L1PB2 3958 + 2008 3647 16023 428 339 18 17 0 3 7 7 0 6 6 11 63 1 2 354 1 0 7 1 0 127 0 1 20 24 10 110 0 1 114 2 0 43 0 1 12 9 8 10 7 1 57 16 12 94 3 4 5 2 0 63 1 0 30 chain 113114 chr9 138394717 + 67569877 67571272 L1PA7 6471 + 5092 6455 16663 263 9 0 65 1 0 200 1 0 4 0 1 4 4 0 136 15 5 471 1 0 69 8 0 129 1 2 14 chain 7510 chr9 138394717 + 67697081 67697185 HY1 111 + 6 111 76103 65 7 8 32 chain 11670 chr9 138394717 + 67709038 67709166 L1PA2 6032 - 435 563 67442 128 chain 28804 chr9 138394717 + 67709166 67709473 L1PA2 6032 + 5660 5967 43620 307 chain 3316 chr9 138394717 + 67709506 67709542 MER5B 177 + 91 127 96873 36 chain 34260 chr9 138394717 + 67737104 67737517 HERVH-int 3825 + 3411 3825 38519 300 7 8 106 chain 39170 chr9 138394717 + 67801724 67802171 L1P1 4361 + 3549 3996 35234 447 chain 22724 chr9 138394717 + 68230327 68230658 THE1B 368 + 0 356 52797 44 0 15 15 0 1 100 1 0 16 0 2 8 31 39 116 chain 20556 chr9 138394717 + 68232234 68232534 THE1B 368 + 0 324 55704 40 1 16 112 1 0 30 35 45 81 chain 8876 chr9 138394717 + 68290962 68291115 Tigger3c 601 + 373 520 72824 24 16 15 14 4 0 37 7 6 51 chain 341043 chr9 138394717 + 68291938 68296444 L1PB1 5432 + 59 5419 6051 81 1 0 266 1 0 94 0 7 34 13 6 381 0 2 100 0 9 193 0 1 16 0 8 35 0 1 110 12 0 372 1 3 253 0 1 56 1 0 99 0 6 53 1 0 6 7 8 32 0 2 80 0 4 43 0 11 19 0 9 33 7 0 89 0 3 78 0 1 108 0 4 65 2 1 193 1 4 84 0 1 37 7 837 67 1 0 354 0 6 129 8 7 64 4 7 180 1 0 291 15 11 24 1 0 8 1 0 12 4 0 9 2 0 53 3 1 15 1 0 41 8 7 12 14 1 25 6 5 5 1 0 14 2 0 24 1 0 19 0 7 23 chain 4965 chr9 138394717 + 68331868 68331929 MER20 218 + 5 67 85826 37 0 1 24 chain 4777 chr9 138394717 + 68392654 68392740 MIR 256 + 59 150 86812 20 19 24 47 chain 27051 chr9 138394717 + 68403142 68403515 MER1A 529 + 154 528 46198 148 1 0 142 25 27 57 chain 47717 chr9 138394717 + 68408601 68409874 L1PA3long 6157 + 4883 6146 30391 474 10 0 789 chain 49077 chr9 138394717 + 68498044 68498662 PRIMA4_LTR 623 + 0 623 29918 25 1 0 163 6 1 50 0 6 15 2 3 43 1 0 7 0 2 69 2 0 214 0 5 20 chain 2908 chr9 138394717 + 68568142 68568227 LTR52 417 + 20 109 100778 14 33 36 4 1 0 28 0 2 5 chain 17172 chr9 138394717 + 68593089 68593281 L1PA2 6032 + 5071 5264 59604 55 0 1 137 chain 110945 chr9 138394717 + 68616841 68618167 LTR12C 1709 + 0 1709 16947 650 0 278 184 1 0 4 4 2 99 0 1 6 0 4 176 15 122 7 1 0 7 1 0 87 1 0 8 1 0 74 chain 64564 chr9 138394717 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138394717 + 69459684 69459766 MIR 256 + 52 133 90169 27 25 24 30 chain 554949 chr9 138394717 + 69477113 69483129 L1PA2 6032 + 6 6029 416 572 0 1 739 1 0 2916 0 4 853 1 0 541 1 0 145 0 5 247 chain 85920 chr9 138394717 + 69489531 69490484 L1PA3long 6157 + 5204 6157 20463 15 1 0 629 0 1 308 chain 83953 chr9 138394717 + 69490493 69491433 L1PA5 6144 + 5022 5962 20819 940 chain 556655 chr9 138394717 + 69506051 69512070 L1PA2 6032 + 0 6016 320 65 3 0 513 0 1 739 1 0 4698 chain 2825 chr9 138394717 + 69523406 69523442 L1PA16 3655 + 5 40 101440 21 1 0 14 chain 2503 chr9 138394717 + 69532020 69532078 L1MC1 2226 + 2131 2188 103636 5 0 1 10 12 11 26 1 0 4 chain 144345 chr9 138394717 + 69575252 69576858 L1PA4 6152 + 4535 6143 12746 1059 0 1 53 1 2 493 chain 3016 chr9 138394717 + 69584507 69584540 MIR 256 + 79 112 99674 33 chain 8076 chr9 138394717 + 69592625 69592804 THE1C 375 + 145 321 74684 27 65 62 87 chain 35301 chr9 138394717 + 69597809 69598190 L1PA2 6032 + 5394 5775 37826 381 chain 22775 chr9 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29 3 2 10 319 0 12 49 41 52 2 1 16 1 0 45 1 0 14 26 16 14 9 6 14 2 0 24 1 0 21 1 0 13 1 0 19 chain 23011 chr9 138394717 + 74725463 74725834 THE1B 368 + 0 368 52340 27 1 0 41 55 55 49 4 3 159 2 1 33 chain 7715 chr9 138394717 + 74772862 74772961 LTR9B 643 + 446 559 75582 67 2 16 30 chain 18410 chr9 138394717 + 74799894 74800141 7SK 245 + 0 239 58220 131 24 16 92 chain 5242 chr9 138394717 + 74817651 74817734 MER51A 677 + 513 597 84492 11 11 12 61 chain 7688 chr9 138394717 + 74847514 74847598 HY4 93 + 9 93 75653 84 chain 121549 chr9 138394717 + 74852454 74853873 SVA_B 1603 + 0 1602 15251 22 17 1 21 1 0 35 0 1 439 0 40 315 1 43 10 0 81 9 0 37 89 1 0 459 chain 5648 chr9 138394717 + 74857692 74857761 U6 107 + 16 87 82566 7 0 2 62 chain 24030 chr9 138394717 + 74909104 74909426 AluYb8 318 + 8 318 50756 35 48 36 239 chain 4624 chr9 138394717 + 74920676 74920730 SVA_F 1814 + 1756 1812 87683 46 0 2 8 chain 29473 chr9 138394717 + 74933872 74934314 L1PA16 3655 + 3090 3537 42634 9 1 0 101 0 4 11 50 52 24 2 0 216 0 2 28 chain 111706 chr9 138394717 + 74968461 74970087 L1PB2 3958 + 2216 3838 16848 265 3 0 93 0 4 139 0 2 19 1 0 5 12 13 51 12 13 104 7 6 192 5 10 32 3 4 95 0 4 6 4 13 21 2 0 42 26 12 13 8 0 56 0 2 20 3 0 53 0 2 38 1 0 72 1 0 37 0 9 17 1 0 73 6 0 22 1 0 13 1 0 15 4 3 32 chain 35177 chr9 138394717 + 75037524 75037996 MER1A 529 + 41 514 37908 15 6 8 4 0 1 386 12 10 49 chain 28913 chr9 138394717 + 75049873 75050258 MER83 447 + 0 402 43463 150 7 17 55 12 19 161 chain 44959 chr9 138394717 + 75056057 75056570 MER9a2 513 + 0 513 31605 513 chain 204373 chr9 138394717 + 75058219 75060565 L1PA6 6164 + 3811 6162 9561 382 0 1 4 1 0 159 0 4 557 0 1 1089 0 1 143 1 0 10 chain 4113 chr9 138394717 + 75065684 75065733 MLT1K 546 + 139 188 90687 49 chain 3982 chr9 138394717 + 75080322 75080368 MSTB 430 + 7 53 91568 46 chain 9065 chr9 138394717 + 75138430 75138646 MER33 330 + 11 235 72409 21 34 36 52 44 50 65 chain 6158 chr9 138394717 + 75156487 75156564 MSTC 436 + 347 424 80501 77 chain 28677 chr9 138394717 + 75163818 75164323 LTR14B 630 + 17 630 43836 144 2 0 30 133 239 20 0 3 50 0 1 126 chain 18184 chr9 138394717 + 75169622 75169946 LTR23 429 + 0 297 58480 63 43 41 38 26 0 73 0 2 63 1 0 17 chain 4159 chr9 138394717 + 75172182 75172315 MER5C 305 + 191 305 90399 5 1 0 41 62 44 24 chain 3250 chr9 138394717 + 75217388 75217461 L1PB1 5432 + 5350 5420 97478 16 6 5 19 5 4 10 1 0 16 chain 10260 chr9 138394717 + 75334164 75334464 L1MA5A 2387 + 2043 2306 69878 26 1 0 8 58 57 24 3 1 9 0 2 11 2 0 26 54 23 45 2 1 19 1 0 11 chain 44382 chr9 138394717 + 75459544 75460059 L1PA6 6164 + 5630 6145 31895 515 chain 122289 chr9 138394717 + 75523985 75525560 THE1A-int 1579 + 0 1574 15145 56 2 6 41 3 2 20 0 1 139 9 0 385 0 1 4 8 10 373 0 1 535 chain 26635 chr9 138394717 + 75525565 75525919 THE1A 353 + 0 353 46783 10 0 1 4 1 0 32 0 1 42 5 4 166 1 0 93 chain 21209 chr9 138394717 + 75550722 75551085 MSTA 426 + 14 405 54870 89 0 1 5 0 4 14 26 33 30 18 16 21 15 13 56 1 21 88 chain 70303 chr9 138394717 + 75553603 75554399 L1PA4 6152 + 5359 6152 23922 353 4 0 253 0 1 186 chain 25552 chr9 138394717 + 75556353 75556726 THE1C 375 + 0 375 48399 125 3 0 17 7 11 31 1 2 21 5 6 137 1 0 25 chain 3537 chr9 138394717 + 75596711 75596780 MER53 195 + 93 167 94962 13 18 23 38 chain 36828 chr9 138394717 + 75619391 75619825 THE1A-int 1579 + 1144 1579 36863 299 0 1 135 chain 28004 chr9 138394717 + 75619825 75620176 THE1A 353 + 0 353 44857 108 1 0 73 0 3 169 chain 289343 chr9 138394717 + 75629448 75632650 L1PA4 6152 + 2935 6146 7149 278 0 1 131 0 1 1958 0 4 657 0 3 178 chain 19659 chr9 138394717 + 75670918 75671156 L1PA6 6164 + 5924 6162 56844 78 1 4 6 3 0 150 chain 13274 chr9 138394717 + 75731982 75732137 L1PA6 6164 + 5715 5872 64673 90 0 1 25 0 1 40 chain 191224 chr9 138394717 + 75744728 75746878 L1PA5 6144 + 3719 5874 10058 479 1 0 433 0 5 275 1 2 961 chain 82778 chr9 138394717 + 75747526 75748553 THE1A-int 1579 + 539 1567 21067 287 5 6 334 0 1 174 2 1 225 chain 32027 chr9 138394717 + 75791623 75792065 MLT2A1 477 + 0 477 40330 17 0 4 148 4 1 9 0 1 24 0 1 180 6 0 8 9 47 37 chain 21036 chr9 138394717 + 75850897 75851195 THE1B 368 + 0 307 55074 14 2 0 33 0 6 116 2 0 6 0 1 4 0 1 17 0 3 6 3 7 18 1 0 8 1 0 67 chain 50319 chr9 138394717 + 75851826 75852435 LTR71B 605 + 0 605 29443 152 5 0 355 1 2 96 chain 41104 chr9 138394717 + 75901130 75901630 L1PA8 5853 + 5353 5847 33908 211 1 0 46 2 0 71 1 0 59 2 1 19 1 0 87 chain 38084 chr9 138394717 + 75950467 75950890 L1P1 4361 + 1758 2181 36004 423 chain 6503 chr9 138394717 + 75951774 75951856 MER2 342 + 133 215 79333 82 chain 8390 chr9 138394717 + 76008910 76009048 MER53 195 + 45 185 73922 49 19 21 70 chain 3185 chr9 138394717 + 76249707 76249743 tRNA-Cys-TGY 72 + 1 37 98032 36 chain 139551 chr9 138394717 + 76261914 76263788 L1PA3long 6157 + 4320 6157 13132 187 37 0 1650 chain 27062 chr9 138394717 + 76318146 76318481 L1PA7 6471 + 6140 6470 46181 222 9 5 99 1 0 4 chain 83716 chr9 138394717 + 76319268 76320224 LTR13A 966 + 0 966 20868 145 0 12 786 3 0 8 0 1 14 chain 37278 chr9 138394717 + 76362556 76363017 LTR2 463 + 0 463 36563 362 12 13 30 4 5 53 chain 5150 chr9 138394717 + 76415519 76415576 MER34C2 569 + 498 555 84908 57 chain 4146 chr9 138394717 + 76422478 76422527 MER47A 366 + 65 114 90482 49 chain 70217 chr9 138394717 + 76434339 76435378 MER11A 1151 + 6 1134 23947 64 0 3 6 21 31 33 0 93 53 8 5 31 35 0 63 0 1 54 0 1 89 0 1 3 0 1 21 1 0 27 17 28 27 1 2 196 13 20 226 16 15 34 chain 41769 chr9 138394717 + 76437165 76437718 MER41A 554 + 0 554 33513 94 0 1 32 7 6 297 6 7 117 chain 66167 chr9 138394717 + 76469230 76469990 LTR17 781 + 0 781 24916 327 1 0 388 0 22 44 chain 48809 chr9 138394717 + 76477878 76478561 LTR12_ 688 + 0 673 30011 105 1 0 4 1 2 31 24 0 226 4 16 256 7 9 24 chain 3803 chr9 138394717 + 76518864 76518908 MADE1 96 + 52 96 92820 44 chain 2930 chr9 138394717 + 76535530 76535567 MLT2D 439 + 391 432 100581 11 0 4 26 chain 4115 chr9 138394717 + 76621613 76621681 MER5A 189 + 0 69 90678 15 6 7 4 1 0 21 0 1 21 chain 80802 chr9 138394717 + 76665837 76666844 LTR13 1007 + 0 1007 21473 73 2 0 324 0 1 230 2 1 56 0 3 12 0 1 274 3 1 31 chain 550097 chr9 138394717 + 76670038 76676075 L1PA2 6032 + 1 6029 741 256 1 0 641 1 0 695 0 1 2748 10 3 168 1 0 1361 0 11 7 18 7 130 chain 19299 chr9 138394717 + 76720868 76721104 AluYc3 301 + 37 274 57238 76 1 2 159 chain 26409 chr9 138394717 + 76742894 76743267 THE1C 375 + 2 375 47107 85 5 4 44 0 4 40 0 2 5 0 1 6 12 6 39 1 0 5 0 1 131 chain 3102 chr9 138394717 + 76769176 76769209 U5 65 + 0 33 98770 33 chain 13334 chr9 138394717 + 76787387 76787554 L1PA8 5853 + 5688 5853 64574 56 1 0 16 1 0 93 chain 24757 chr9 138394717 + 76792080 76792435 THE1B 368 + 0 368 49651 148 0 8 13 1 0 11 0 1 9 17 24 17 1 0 11 2 1 125 chain 4391 chr9 138394717 + 76813511 76813563 MER63C 923 + 508 560 88939 52 chain 4888 chr9 138394717 + 76818884 76818941 MLT1C 463 + 33 90 86214 57 chain 189925 chr9 138394717 + 76841010 76843480 L1PA7 6471 + 0 6465 10122 131 18 10 378 0 1 82 0 19 287 46 4010 108 1 2 55 0 1 26 1 3 180 0 2 174 0 5 147 1 0 56 1 10 15 1 0 335 0 6 91 3 0 53 1 0 125 2 4 143 3 0 6 chain 35108 chr9 138394717 + 76858360 76858768 L1PA7 6471 + 6062 6470 37950 408 chain 5909 chr9 138394717 + 76954631 76954698 LTR7Y 441 + 374 441 81448 67 chain 130132 chr9 138394717 + 76954829 76956284 SVA_D 2077 + 0 2077 14022 542 0 40 105 0 40 29 0 9 85 0 309 171 0 224 523 chain 38840 chr9 138394717 + 77051003 77051469 L1PA7 6471 + 5997 6466 35476 302 3 5 17 1 2 143 chain 6005 chr9 138394717 + 77064830 77064908 Tigger2b_Pri 1066 + 834 914 81060 48 0 2 30 chain 11012 chr9 138394717 + 77070687 77070859 LTR48 738 + 316 499 68538 25 0 2 77 3 9 34 7 11 19 1 0 6 chain 195611 chr9 138394717 + 77101026 77104068 L1PA13 3608 + 815 3548 9856 60 313 6 66 5 0 353 0 1 211 18 22 67 7 8 82 0 1 155 0 2 112 8 0 7 0 12 44 4 5 6 1 0 55 6 1 200 1 4 180 0 1 117 0 6 65 8 9 241 3 14 65 0 3 121 12 11 32 1 0 114 2 0 62 1 0 55 1 0 4 3 1 47 2 0 5 7 6 12 1 0 21 0 3 7 20 9 12 1 0 6 7 1 10 1 0 6 2 0 7 chain 58757 chr9 138394717 + 77155884 77156556 L1PA6 6164 + 5486 6159 26750 67 0 1 605 chain 3295 chr9 138394717 + 77218555 77218596 MER5A 189 + 147 188 97060 41 chain 51484 chr9 138394717 + 77299362 77300034 L1PA8 5853 + 5132 5796 29053 432 1 0 45 5 0 73 1 0 5 1 2 40 15 14 17 1 0 36 chain 84101 chr9 138394717 + 77335325 77336363 L1PA7 6471 + 5428 6470 20780 196 0 4 345 7 4 205 0 3 285 chain 9539 chr9 138394717 + 77341216 77341336 LTR17 781 + 205 326 71392 78 0 1 42 chain 135175 chr9 138394717 + 77372416 77373879 L1PA2 6032 + 3798 5261 13528 1463 chain 33051 chr9 138394717 + 77398830 77399180 L1HS 6032 + 5682 6032 39472 350 chain 540019 chr9 138394717 + 77408305 77414734 L1PA4 6152 + 0 6136 1340 399 4 0 338 1 0 137 0 1 56 4 0 514 0 4 752 0 2 366 0 4 10 0 2 489 311 0 86 0 2 22 0 4 777 4 0 386 0 4 283 0 5 518 2 0 142 1 5 88 0 1 739 chain 24363 chr9 138394717 + 77441135 77441511 THE1D 372 + 0 372 50230 39 16 7 142 24 23 27 8 14 120 chain 9797 chr9 138394717 + 77473031 77473170 L1MB7 1623 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2 34 1 0 12 13 11 154 chain 100739 chr9 138394717 + 77970555 77971783 L1P1 4361 + 2898 4136 18212 273 2 0 49 6 19 269 1 0 628 chain 513728 chr9 138394717 + 78054246 78060365 L1PA6 6164 + 15 6161 2587 91 1 5 305 10 11 506 0 4 922 0 5 138 1 0 184 1 0 12 0 1 121 9 11 266 0 1 591 0 1 765 1 0 23 0 1 219 1 0 138 0 2 23 1 5 340 7 8 598 0 4 845 chain 32529 chr9 138394717 + 78066953 78067378 MER4A1 472 + 0 448 39924 227 0 21 148 4 6 46 chain 373775 chr9 138394717 + 78075495 78079760 L1PA4 6152 + 3 4804 5590 93 0 525 208 0 1 612 1 2 5 1 0 1179 0 10 571 1 0 1228 0 1 366 chain 270455 chr9 138394717 + 78083621 78086921 L1PA6 6164 + 13 3324 7697 496 2 1 232 3 4 160 0 4 25 0 10 141 0 3 87 4 5 157 1 4 65 9 3 320 0 2 593 7 0 255 1 0 609 0 1 115 0 1 18 chain 62043 chr9 138394717 + 78086921 78087644 L1PA6 6164 + 3969 4696 25809 247 0 1 94 0 1 40 0 1 62 0 1 280 chain 118708 chr9 138394717 + 78087644 78089042 L1PA6 6164 + 4726 6155 15768 776 0 29 28 0 1 443 15 14 50 0 2 86 chain 51456 chr9 138394717 + 78135737 78136339 L1PA4 6152 + 2581 3183 29065 202 0 2 373 1 0 7 1 0 18 chain 102489 chr9 138394717 + 78136340 78137506 L1PA4 6152 + 3183 4351 18011 333 1 0 164 1 2 244 0 1 13 0 1 410 chain 103762 chr9 138394717 + 78137506 78139317 L1PA4 6152 + 4355 6152 17842 351 0 1 67 0 1 29 621 600 737 0 5 6 chain 76485 chr9 138394717 + 78141707 78142795 MER11A 1151 + 6 1151 22440 81 0 91 52 1 0 64 4 0 149 0 1 94 0 1 144 0 2 150 25 1 11 8 15 24 24 6 17 11 12 58 8 9 163 chain 44689 chr9 138394717 + 78143309 78143878 LTR71B 605 + 23 605 31745 103 10 21 4 1 0 64 0 1 177 0 1 44 0 1 166 chain 35742 chr9 138394717 + 78172658 78173098 MER9a3 513 + 63 513 37570 7 0 7 34 0 1 182 2 1 140 0 1 9 0 2 66 chain 326989 chr9 138394717 + 78181104 78185060 HERVH-int 3825 + 0 3825 6265 437 0 7 88 5 0 38 1 0 10 1 0 12 64 12 15 1 0 11 9 6 20 43 0 42 3 2 21 50 8 27 1 7 16 0 1 290 13 14 276 0 1 439 0 1 9 0 1 2014 chain 1194 chr9 138394717 + 78181725 78181760 HERVH-int 3825 + 649 683 83135 7 1 0 27 chain 24244 chr9 138394717 + 78186408 78186819 LTR7 482 + 0 482 50427 69 59 46 17 0 51 41 8 40 154 14 15 49 chain 524530 chr9 138394717 + 78200656 78207391 L1PA7 6471 + 0 6470 2068 242 11 17 152 0 1 380 0 33 286 14 0 131 6 12 38 6 9 48 6 5 435 0 1 77 0 2 5 7 6 13 1 4 412 1 0 78 0 1 243 9 1 211 0 1 546 0 1 151 9 17 7 4 0 1005 1 0 7 0 1 372 329 0 32 0 2 34 0 11 557 0 1 31 1 0 180 0 4 18 0 4 37 0 1 333 0 4 11 0 1 258 chain 8095 chr9 138394717 + 78291269 78291413 Tigger3c 601 + 406 567 74651 28 16 32 18 10 11 72 chain 508729 chr9 138394717 + 78334341 78340788 L1PA6 6164 + 0 6162 2814 124 0 1 112 0 2 23 2 1 191 5 6 58 0 2 47 1 0 232 1 2 222 2 1 21 0 1 122 0 2 15 1 0 78 1 0 579 321 0 58 0 1 329 0 26 26 1 0 48 1 2 5 0 2 171 8 6 7 0 2 697 0 1 263 0 2 194 4 3 20 8 0 355 2 5 236 0 2 59 0 4 1037 0 1 62 5 6 684 3 0 6 chain 3909 chr9 138394717 + 78354497 78354542 MIR 256 + 70 115 92054 45 chain 118515 chr9 138394717 + 78409815 78411312 LTR12C 1709 + 0 1709 15804 300 0 1 161 5 7 180 0 119 69 1 0 275 1 0 4 8 6 95 18 11 164 0 102 124 18 17 74 chain 67978 chr9 138394717 + 78430993 78431827 LTR12 884 + 0 884 24458 264 0 25 17 1 3 8 0 25 36 2 0 506 chain 5345 chr9 138394717 + 78432048 78432316 MLT1B 390 + 27 276 83978 29 0 10 22 27 26 11 34 33 16 102 75 27 chain 8685 chr9 138394717 + 78442544 78442643 LTR12C 1709 + 932 1031 73246 99 chain 277026 chr9 138394717 + 78455894 78459703 L1PB1 5432 + 1586 5420 7518 14 0 4 106 2 1 398 0 4 388 1 0 9 0 5 323 1 4 40 0 7 41 15 19 186 0 8 344 0 4 81 8 7 4 0 1 83 12 14 40 8 0 7 4 9 331 9 14 73 0 4 38 2 10 402 4 8 143 1 2 49 3 4 219 19 19 50 11 4 7 1 0 26 1 0 7 1 0 9 17 11 48 7 7 15 6 5 39 1 0 15 3 0 5 58 45 24 5 7 14 1 0 13 1 0 16 chain 30121 chr9 138394717 + 78459828 78460182 L1PA7 6471 + 4550 4912 41925 119 0 8 235 chain 70040 chr9 138394717 + 78460187 78461006 L1PA7 6471 + 4918 5753 23986 555 0 5 121 0 4 17 0 7 126 chain 50317 chr9 138394717 + 78461006 78461633 L1PA7 6471 + 5756 6417 29444 450 5 8 44 0 19 18 0 2 21 2 12 87 chain 36534 chr9 138394717 + 78524014 78524484 MER4A1 472 + 0 472 37055 100 6 8 56 2 1 133 0 1 173 chain 66437 chr9 138394717 + 78535216 78535935 L1PA2 6032 + 5313 6032 24844 719 chain 4036 chr9 138394717 + 78536869 78536914 MER44D 709 + 72 117 91183 45 chain 3449 chr9 138394717 + 78546480 78546519 U6 107 + 0 39 95651 39 chain 3703 chr9 138394717 + 78548135 78548178 MADE1 96 - 53 96 93593 43 chain 3234 chr9 138394717 + 78606787 78606828 L1MC1 2226 + 2152 2192 97623 33 1 0 7 chain 132539 chr9 138394717 + 78647286 78648892 L1PA7 6471 + 4848 6461 13779 766 0 3 56 4 1 29 1 0 15 0 3 72 0 2 89 0 1 423 1 3 150 chain 117172 chr9 138394717 + 78652279 78654086 L1PA3long 6157 + 4362 6157 16028 350 12 0 1445 chain 25124 chr9 138394717 + 78704866 78705535 THE1A 353 + 0 353 49083 40 7 8 48 1 0 16 0 2 5 8 6 100 316 0 128 chain 65841 chr9 138394717 + 78737829 78738541 L1PA2 6032 + 5318 6030 24991 712 chain 56396 chr9 138394717 + 78864246 78864859 L1PA2 6032 + 5411 6024 27455 613 chain 376254 chr9 138394717 + 78874537 78878654 L1PA2 6032 + 1908 6030 5547 2444 0 1 807 0 4 866 chain 7399 chr9 138394717 + 78920704 78920796 MER47A 366 + 158 250 76397 92 chain 34218 chr9 138394717 + 78946346 78947514 THE1C-int 1605 + 0 569 38551 26 8 9 87 7 61 78 14 3 25 650 0 156 12 19 105 chain 27995 chr9 138394717 + 78947538 78947893 THE1A 353 + 0 353 44875 110 1 0 57 2 1 185 chain 36761 chr9 138394717 + 79008307 79008767 LTR2 463 + 0 463 36914 60 1 0 70 0 4 146 9 8 92 0 1 82 chain 124465 chr9 138394717 + 79075408 79076767 L1PA3long 6157 + 4782 6142 14784 570 0 1 789 chain 7969 chr9 138394717 + 79283414 79283520 MLT1A0 366 + 211 318 74951 66 1 2 39 chain 22814 chr9 138394717 + 79319050 79319406 THE1B 368 + 1 368 52637 40 47 63 72 1 0 21 3 0 96 1 0 75 chain 9929 chr9 138394717 + 79375814 79375987 MER2 342 + 139 317 70567 7 0 3 113 19 20 11 7 8 16 chain 65434 chr9 138394717 + 79423103 79423892 L1PA7 6471 + 4339 5136 25086 222 1 0 70 0 1 100 5 4 223 0 9 168 chain 536812 chr9 138394717 + 79438972 79444969 L1PA3long 6157 + 11 6152 1520 141 0 1 400 1 0 20 1 0 209 0 128 252 0 3 84 1 0 196 0 1 833 0 1 952 0 4 452 2 0 473 0 1 1058 0 10 817 0 3 5 3 0 97 chain 11990 chr9 138394717 + 79458111 79458274 MER47A 366 + 70 233 66853 9 0 2 12 5 3 137 chain 16505 chr9 138394717 + 79473239 79473470 L1PA8 5853 + 5628 5853 60364 54 9 6 12 2 1 39 2 1 19 1 0 93 chain 2973 chr9 138394717 + 79514786 79514827 Charlie1b 519 + 323 362 100177 33 2 0 6 chain 70006 chr9 138394717 + 79539743 79540659 L1PA8 5853 + 4922 5852 23995 83 0 1 4 6 4 75 8 9 466 1 0 36 1 0 8 2 0 65 7 6 61 3 21 85 0 1 5 chain 451317 chr9 138394717 + 79544529 79549550 L1PA4 6152 + 963 5972 4354 281 2 0 1422 10 0 511 1 0 63 0 1 51 1 0 1599 0 1 1080 chain 20487 chr9 138394717 + 79644026 79644398 THE1C 375 + 0 374 55794 63 74 80 36 0 2 5 17 12 151 1 0 25 chain 98403 chr9 138394717 + 79733829 79734970 L1P3 4156 + 2887 4062 18494 208 0 3 171 0 2 475 0 1 57 0 32 105 3 0 57 2 1 63 chain 8938 chr9 138394717 + 79746111 79746336 Zaphod 902 + 107 354 72694 24 78 102 23 12 10 88 chain 2975 chr9 138394717 + 79755896 79755931 MER5A 189 + 39 74 100103 35 chain 3689 chr9 138394717 + 79774034 79774083 L1MA4 2864 + 2757 2804 93681 9 2 0 38 chain 246536 chr9 138394717 + 79852753 79855461 L1PA3long 6157 + 3443 6152 8314 503 0 1 2205 chain 12591 chr9 138394717 + 79859624 79859807 L1PA15-16 3068 + 289 448 65810 32 22 0 32 2 0 95 chain 76778 chr9 138394717 + 79861222 79862278 MER11C 1089 + 0 1057 22378 246 0 9 62 0 4 68 8 10 105 0 4 24 61 63 95 0 4 5 1 0 38 0 1 127 0 1 102 39 5 30 0 9 45 chain 3935 chr9 138394717 + 79870682 79870725 MLT2A2 560 + 517 560 91871 43 chain 35055 chr9 138394717 + 79913371 79913840 MER4A1 472 + 0 472 37983 16 3 6 11 1 0 277 1 0 92 1 3 67 chain 24531 chr9 138394717 + 79918552 79921572 L1PA7 6471 + 5702 6468 49975 269 2251 0 480 0 1 6 4 0 10 chain 3869 chr9 138394717 + 79926341 79926387 MER21C 908 + 46 92 92360 46 chain 21593 chr9 138394717 + 80022479 80022887 MER21A 919 + 7 454 54371 51 13 26 39 2 0 49 44 41 77 0 22 45 41 50 47 chain 331754 chr9 138394717 + 80117413 80121234 L1PA4 6152 + 1220 5052 6186 16 0 2 6 2 0 70 50 49 958 0 1 104 0 1 866 0 9 908 0 1 841 chain 37480 chr9 138394717 + 80137294 80137741 LTR7 482 + 0 482 36417 247 0 31 99 1 3 39 12 14 49 chain 297519 chr9 138394717 + 80137743 80141444 HERVH-int 3825 + 0 3816 6901 212 0 11 120 0 1 191 14 9 26 1 0 10 1 0 9 4 0 14 32 5 11 24 0 11 88 1 67 0 20 11 2 1 48 0 1 310 3 14 120 15 0 462 4 31 78 8 6 248 0 2 404 1 0 666 8 218 478 chain 4484 chr9 138394717 + 80138423 80138481 HERVH-int 3825 + 668 725 83648 33 1 0 24 chain 35490 chr9 138394717 + 80142711 80143148 LTR7 482 + 0 482 37730 227 4 34 44 0 3 104 9 21 49 chain 3928 chr9 138394717 + 80162225 80162271 MADE1 96 + 50 96 91925 46 chain 154191 chr9 138394717 + 80238956 80240936 L1PA8 5853 + 3858 5853 12101 858 0 6 262 0 4 21 0 2 71 4 5 106 0 3 94 0 1 273 1 0 44 13 11 59 2 1 8 1 4 8 0 1 18 45 43 92 chain 66271 chr9 138394717 + 80251184 80251892 L1HS 6032 + 5324 6032 24885 708 chain 73733 chr9 138394717 + 80344885 80345776 L1P1 4361 + 2 889 23157 567 0 3 129 7 0 188 chain 45053 chr9 138394717 + 80345776 80346278 L1PA3long 6157 + 5655 6157 31552 502 chain 5000 chr9 138394717 + 80387405 80387488 MIR 256 + 71 153 85656 58 13 12 12 chain 74078 chr9 138394717 + 80390623 80391510 L1PA7 6471 + 5577 6468 23073 43 2 5 498 1 2 343 chain 3144 chr9 138394717 + 80405305 80405340 L1MCb 1641 + 35 70 98424 35 chain 165231 chr9 138394717 + 80452109 80454222 L1PA8A 6298 + 4179 6290 11398 158 0 1 24 0 1 642 0 7 138 11 0 87 10 0 33 1 3 55 7 11 68 0 1 77 1 0 609 5 10 79 5 6 19 2 0 82 chain 39637 chr9 138394717 + 80482386 80482884 LTR3B_ 500 + 0 500 34936 238 7 10 54 1 0 198 chain 22878 chr9 138394717 + 80532537 80532823 L1P3 4156 + 3766 4053 52536 66 6 7 214 chain 173318 chr9 138394717 + 80535107 80537155 L1PA6 6164 + 4105 6153 10937 429 0 1 114 1 0 29 0 1 131 39 39 466 1 0 838 chain 76792 chr9 138394717 + 80545938 80546793 L1PA3long 6157 + 5303 6157 22376 80 0 1 282 2 0 491 chain 109902 chr9 138394717 + 80576181 80577717 L1PB1 5432 + 3575 5103 17088 75 4 6 14 10 11 45 5 6 24 0 1 171 0 1 416 0 2 5 6 5 226 4 5 29 0 5 183 2 0 117 1 0 4 1 2 74 33 14 87 chain 114792 chr9 138394717 + 80610826 80612118 L1P1 4361 + 3038 4328 16413 1112 1 0 155 1 0 23 chain 28806 chr9 138394717 + 80642075 80642453 L1PA8A 6298 + 5912 6289 43615 269 13 4 7 0 9 35 1 0 53 chain 5312 chr9 138394717 + 80734247 80734327 MADE1 96 - 0 96 84137 38 5 21 37 chain 33685 chr9 138394717 + 80738538 80738913 L1PA3long 6157 + 5774 6149 38939 375 chain 76318 chr9 138394717 + 80785584 80786462 L1PA7 6471 + 5579 6459 22484 35 1 4 700 1 0 141 chain 43726 chr9 138394717 + 80808500 80809051 MLT2A2 560 + 0 560 32300 114 1 0 66 1 0 222 1 12 146 chain 388334 chr9 138394717 + 80816256 80820692 L1PA4 6152 + 398 4834 5343 1446 0 4 98 2 1 831 1 0 400 1 0 1339 2 1 316 chain 27144 chr9 138394717 + 80897378 80897717 L1PA6 6164 + 5817 6157 46058 199 2 3 138 chain 61028 chr9 138394717 + 80901537 80902239 L1PA5 6144 + 5434 6137 26095 371 0 1 331 chain 10149 chr9 138394717 + 80915880 80915996 L1PA4 6152 + 3048 3164 70105 116 chain 80419 chr9 138394717 + 80915997 80916964 L1PA4 6152 + 3164 4127 21540 365 0 3 95 5 1 56 3 0 443 chain 175650 chr9 138394717 + 80916965 80918965 L1PA4 6152 + 4127 6152 10795 790 0 1 270 0 20 96 0 4 844 chain 3524 chr9 138394717 + 80942147 80942390 L1MCa 1829 + 1557 1692 95069 27 186 78 30 chain 2696 chr9 138394717 + 80949594 80949824 MER33 330 + 62 294 102369 22 181 183 27 chain 45227 chr9 138394717 + 80966878 80967419 MLT2A2 560 + 1 547 31464 27 0 5 170 0 1 20 7 6 317 chain 124924 chr9 138394717 + 80969912 80971507 THE1A-int 1579 + 0 1579 14719 393 0 1 739 18 1 14 17 16 116 0 1 298 chain 9969 chr9 138394717 + 80990166 80990367 L1PB1 5432 + 5221 5402 70486 15 1 0 45 2 1 14 1 0 4 2 0 13 38 27 6 2 0 24 1 0 22 1 0 10 chain 39176 chr9 138394717 + 81004947 81005411 L1PA7 6471 + 6004 6465 35229 453 3 0 8 chain 292001 chr9 138394717 + 81009483 81013046 HERVH-int 3825 + 0 3823 7073 98 5 6 229 1 0 43 0 2 95 1 58 39 1 0 10 1 0 10 4 0 13 7 1 13 4 21 19 22 0 42 1 0 64 0 2 14 0 1 320 0 4 1391 5 6 609 0 1 9 37 247 59 23 23 374 chain 511730 chr9 138394717 + 81162304 81168596 L1PA7 6471 + 15 6470 2676 181 9 15 118 13 183 209 4 14 97 0 1 236 3 0 272 21 5 10 0 1 535 4 0 317 0 2 116 0 11 300 13 0 846 1 2 43 1 0 927 0 1 77 8 0 273 6 10 808 0 4 314 0 1 363 6 0 7 7 11 134 2 0 11 chain 32847 chr9 138394717 + 81200426 81200807 L1PA7 6471 + 5236 5621 39631 319 1 5 61 chain 72356 chr9 138394717 + 81200807 81201639 L1PA7 6471 + 5624 6456 23457 832 chain 529124 chr9 138394717 + 81217155 81223121 L1PA4 6152 + 3 5972 1873 277 0 1 175 12 6 118 1 0 602 1 0 54 1 0 1149 1 5 2245 1 0 106 0 1 421 0 1 136 0 5 324 0 1 342 chain 158286 chr9 138394717 + 81261018 81263216 L1PA6 6164 + 4257 6160 11857 21 0 8 775 310 0 130 0 1 120 0 4 331 0 1 351 0 1 160 chain 20224 chr9 138394717 + 81264201 81264467 AluSg7 307 + 47 303 56110 84 0 1 154 11 0 17 chain 5311 chr9 138394717 + 81302548 81302614 Tigger1 2417 + 1625 1694 84149 6 0 3 60 chain 66777 chr9 138394717 + 81302725 81303735 L1PB 1623 + 421 1336 24752 23 0 1 32 1 0 8 1 0 97 14 14 77 2 0 76 110 23 343 0 3 65 17 5 117 0 4 27 chain 5721 chr9 138394717 + 81352427 81352500 L1M1 2793 + 1003 1076 82250 73 chain 113328 chr9 138394717 + 81354525 81356190 L1PB1 5432 + 3777 5410 16627 308 1 0 135 9 10 126 2 0 129 13 15 129 8 6 69 1 3 55 12 11 8 0 1 265 1 2 4 1 0 50 15 11 20 1 0 13 16 11 11 3 1 50 2 1 12 2 4 44 1 0 15 3 0 7 15 6 17 9 6 14 2 0 17 8 7 21 1 0 13 1 0 6 chain 99387 chr9 138394717 + 81363644 81366416 L1PREC2 3366 + 1149 3006 18366 122 1151 313 5 3 0 70 42 41 425 0 1 4 1 0 11 0 1 4 1 0 290 25 3 278 1 0 6 1 0 4 0 1 24 2 0 16 6 7 24 10 9 38 92 63 12 9 7 16 44 27 35 chain 556027 chr9 138394717 + 81432297 81438437 L1PA3long 6157 + 4 6157 358 618 0 1 337 0 1 88 0 2 111 0 3 1041 0 2 3102 0 4 843 chain 12716 chr9 138394717 + 81507916 81508199 LTR12C 1709 + 888 1052 65592 147 119 0 17 chain 24791 chr9 138394717 + 81561018 81561394 THE1B 368 + 0 368 49604 15 2 0 32 0 1 63 11 12 46 31 24 100 1 0 75 chain 104821 chr9 138394717 + 81605562 81606783 L1PA6 6164 + 4947 6162 17711 244 6 1 126 0 4 575 6 0 77 1 2 186 chain 7773 chr9 138394717 + 81613065 81613160 AluSq10 312 + 204 298 75433 58 1 0 36 chain 22550 chr9 138394717 + 81645092 81645379 AluSp 311 + 15 296 53043 158 6 1 26 0 1 28 2 0 67 chain 163929 chr9 138394717 + 81709577 81711924 SVA_F 1814 + 9 1809 11486 819 189 0 27 1 0 25 0 1 17 2 1 49 3 18 305 372 0 538 chain 14999 chr9 138394717 + 81710396 81710585 SVA_F 1814 + 868 1068 31411 20 3 0 42 0 1 16 2 15 106 chain 16678 chr9 138394717 + 81711014 81711291 SVA_F 1814 + 1095 1271 38351 24 50 0 19 49 0 39 1 0 10 1 0 84 chain 3619 chr9 138394717 + 81711038 81711088 SVA_F 1814 + 878 928 45085 50 chain 2980 chr9 138394717 + 81711123 81711156 SVA_F 1814 + 914 947 81232 33 chain 5790 chr9 138394717 + 81711291 81711371 SVA_F 1814 + 1095 1169 45085 33 3 0 4 2 0 33 1 0 4 chain 37828 chr9 138394717 + 81730535 81731023 LTR12F 595 + 12 522 36184 91 1 2 40 2 0 32 0 8 25 15 30 282 chain 6443 chr9 138394717 + 81774839 81774912 THE1B 368 + 243 316 79537 73 chain 25971 chr9 138394717 + 81800265 81800537 AluYa5 310 + 35 307 47759 272 chain 7065 chr9 138394717 + 81896949 81897056 L1PA16 3655 + 3373 3481 77389 42 15 16 50 chain 25319 chr9 138394717 + 81960699 81960985 AluYa5 310 + 26 310 48758 38 2 0 246 chain 22954 chr9 138394717 + 82020812 82021100 MER47A 366 + 58 346 52431 288 chain 38273 chr9 138394717 + 82098632 82099128 LTR12 884 + 0 736 35860 25 1 0 110 2 27 112 0 113 160 0 103 86 chain 25261 chr9 138394717 + 82169423 82169687 AluYa5 310 + 34 298 48849 264 chain 19361 chr9 138394717 + 82190504 82190738 THE1B-int 1605 + 1371 1605 57171 187 1 0 37 0 1 9 chain 515022 chr9 138394717 + 82215599 82222070 L1PA7 6471 + 0 6461 2520 14 0 2 223 0 2 199 18 20 4 1 0 17 6 7 285 22 0 110 0 2 358 30 30 461 0 7 18 2 1 299 12 13 155 0 1 273 0 2 132 20 0 10 1 2 837 0 2 5 3 2 56 0 4 53 0 1 123 0 1 432 4 0 69 1 0 412 2 3 30 1 3 186 1 0 4 6 7 446 3 4 26 0 1 210 9 10 47 0 3 479 0 1 31 1 2 324 chain 40991 chr9 138394717 + 82233379 82233907 L1PA8A 6298 + 5751 6288 33978 108 0 9 104 2 1 5 0 2 278 2 1 29 chain 4974 chr9 138394717 + 82273136 82273196 L1P1 4361 + 2540 2600 85784 60 chain 5155 chr9 138394717 + 82279086 82279185 L1MC2 1988 + 1782 1877 84882 13 1 0 15 5 6 11 3 0 20 2 1 29 chain 15826 chr9 138394717 + 82286453 82286885 L1M1 2793 + 661 1022 61251 41 42 29 9 2 0 5 2 0 11 1 0 8 54 48 18 2 0 9 1 0 35 42 0 19 15 12 75 0 2 21 1 0 19 chain 20854 chr9 138394717 + 82286885 82287214 THE1B 368 + 0 368 55301 169 1 0 8 32 72 57 3 1 17 7 9 35 chain 31767 chr9 138394717 + 82324907 82325292 L1PA7 6471 + 5444 5839 40522 158 0 4 8 0 4 152 0 2 67 chain 25480 chr9 138394717 + 82344887 82345248 THE1B 368 + 0 368 48511 172 8 7 15 2 0 6 0 2 104 16 24 38 chain 37659 chr9 138394717 + 82345248 82345719 THE1B-int 1605 + 0 497 36300 428 2 28 41 chain 2006 chr9 138394717 + 82368140 82368174 MER5B 177 + 19 53 106240 34 chain 250865 chr9 138394717 + 82376638 82380582 L1PA10 4194 + 175 4161 8204 11 2 0 7 9 6 8 2 0 9 8 4 12 22 18 21 2 0 15 1 0 8 58 32 11 13 11 6 1 0 6 0 3 9 0 3 7 0 2 11 10 0 8 1 0 14 0 1 64 12 10 481 8 13 239 9 82 215 0 3 117 28 32 333 0 2 140 3 7 70 0 4 138 10 9 221 309 90 14 0 216 19 0 4 214 0 4 111 1 0 82 0 1 13 0 3 203 0 1 39 0 1 60 0 4 14 0 1 5 35 10 256 10 14 8 0 9 122 3 0 34 1 0 11 chain 96776 chr9 138394717 + 82413826 82415248 L1PB2 3958 + 2376 3838 18684 107 7 5 226 3 7 203 1 0 27 0 1 60 8 11 137 0 9 11 16 22 86 0 2 17 2 0 54 1 0 14 1 0 64 2 0 12 2 0 29 0 1 4 2 1 40 2 1 18 1 0 32 11 18 23 1 0 63 1 0 65 17 40 52 chain 48745 chr9 138394717 + 82528429 82529021 L1PA8 5853 + 4856 5449 30034 153 0 2 210 0 1 4 2 1 122 1 0 100 chain 62980 chr9 138394717 + 82569429 82570141 L1PA5 6144 + 5432 6144 25635 712 chain 43746 chr9 138394717 + 82630251 82630802 LTR19B 566 + 0 566 32289 160 6 7 129 1 4 150 5 4 37 0 9 12 0 3 51 chain 19842 chr9 138394717 + 82807033 82807358 THE1C 375 + 27 355 56618 18 56 53 9 1 2 4 0 1 186 0 4 51 chain 43278 chr9 138394717 + 82811003 82811558 MER41A 554 + 0 554 32592 189 11 10 355 chain 8833 chr9 138394717 + 82835294 82835409 L1MD2 1676 + 1381 1495 72911 60 1 0 54 chain 38144 chr9 138394717 + 82883732 82884183 LTR7 482 + 0 482 35955 263 1 32 187 chain 295022 chr9 138394717 + 82884185 82887787 HERVH-int 3825 + 0 3825 6986 532 66 0 38 2 1 9 1 0 23 0 51 44 2 1 10 21 2 18 2 1 49 1 0 36 0 1 269 7 18 578 8 35 204 1 3 92 0 10 1095 8 218 339 0 1 147 chain 5070 chr9 138394717 + 82884723 82884778 HERVH-int 3825 + 477 532 85313 55 chain 38984 chr9 138394717 + 82889040 82889489 LTR7 482 + 0 482 35367 263 1 32 87 0 2 98 chain 86177 chr9 138394717 + 82941103 82942077 L1PA5 6144 + 5160 6139 20395 138 0 4 508 0 1 328 chain 8813 chr9 138394717 + 82973883 82974023 HSMAR2 1300 + 1135 1279 72971 34 3 5 14 12 14 77 chain 12404 chr9 138394717 + 83039884 83040162 THE1B 368 + 0 306 66130 39 0 1 37 43 44 48 1 0 6 32 39 16 1 0 10 3 23 4 0 1 38 chain 4155 chr9 138394717 + 83045200 83045248 MLT2D 439 + 391 439 90426 48 chain 7925 chr9 138394717 + 83078226 83078322 MER57F 435 + 0 96 75057 96 chain 89852 chr9 138394717 + 83114082 83115156 MER11C 1089 + 0 1079 19708 224 7 9 79 1 2 277 8 9 397 0 1 81 chain 25497 chr9 138394717 + 83135200 83135492 L1PA5 6144 + 5837 6132 48485 201 0 3 91 chain 54667 chr9 138394717 + 83143200 83144152 L1PA16 3655 + 2712 3587 27987 80 0 2 91 1 5 32 6 5 37 5 6 37 111 30 52 2 1 105 7 6 57 34 32 12 2 5 68 0 2 201 3 0 9 chain 28321 chr9 138394717 + 83189069 83189433 THE1C 375 + 9 375 44380 171 0 1 6 1 0 16 0 3 144 1 0 25 chain 10485 chr9 138394717 + 83216710 83216850 THE1B-int 1605 - 152 285 69442 6 7 0 127 chain 328037 chr9 138394717 + 83251353 83256868 L1PA11 4918 + 15 4508 6250 27 2 0 25 0 1 10 4 1 36 1 0 15 6 4 46 1 0 33 9 6 48 3 0 5 0 3 269 6 0 269 10 14 312 0 3 207 1 0 90 6 13 73 7 5 11 12 0 14 1 2 141 20 23 92 0 1 224 0 7 11 1022 0 116 5 6 14 9 4 6 0 3 19 17 18 5 0 2 14 0 3 21 0 1 4 1 3 170 17 18 18 0 1 54 21 15 115 0 1 553 0 6 278 0 4 162 0 1 173 2 0 5 0 2 112 0 1 209 0 6 122 6 3 10 0 1 58 2 1 12 4 0 60 8 1 8 2 0 12 5 4 17 chain 61364 chr9 138394717 + 83253420 83254096 L1PA5 6144 + 5289 5965 26019 676 chain 125597 chr9 138394717 + 83272057 83273595 SVA_C 1631 + 0 1579 14614 15 6 5 12 7 8 8 13 0 159 3 1 298 74 0 331 0 42 51 0 91 16 3 0 542 chain 3217 chr9 138394717 + 83272606 83272643 SVA_C 1631 + 458 495 97742 37 chain 3276 chr9 138394717 + 83290191 83290228 MER3 215 - 6 43 97212 37 chain 19702 chr9 138394717 + 83354239 83354555 L1PA16 3655 + 3326 3619 56781 89 5 6 156 3 0 10 37 16 16 chain 11547 chr9 138394717 + 83398538 83398666 L1PA4 6152 + 6023 6151 67670 128 chain 48786 chr9 138394717 + 83418187 83418916 L1PB2 3958 + 3129 3838 30016 175 0 1 57 1 0 12 5 0 65 19 12 32 0 1 27 3 0 34 1 0 72 1 0 64 1 0 64 0 2 6 3 1 21 1 0 7 11 9 47 chain 3163 chr9 138394717 + 83426558 83426595 MER5A1 166 + 45 82 98257 37 chain 28300 chr9 138394717 + 83455290 83455647 THE1A 353 + 0 353 44417 109 2 1 32 1 0 60 2 0 151 chain 535313 chr9 138394717 + 83513668 83520150 L1PA7 6471 + 3 6465 1604 407 0 2 433 1 0 5 0 1 68 1 2 475 5 4 88 3 0 328 0 1 30 1 2 301 0 1 62 1 0 302 1 0 4 0 2 110 3 1 634 0 2 235 1 0 324 1 0 9 23 4 6 0 1 158 0 4 318 3 0 101 7 9 542 1 0 40 2 1 587 1 2 5 1 0 314 6 5 526 2 0 6 chain 4287 chr9 138394717 + 83526250 83526302 MER45A 178 + 96 148 89591 52 chain 9468 chr9 138394717 + 83529206 83529341 L1MB7 1623 + 612 745 71561 21 10 8 104 chain 14944 chr9 138394717 + 83535526 83535734 MER30 238 + 0 238 62327 17 1 19 70 4 19 74 3 0 39 chain 3371 chr9 138394717 + 83548923 83548965 HY3 101 + 22 64 96377 42 chain 30292 chr9 138394717 + 83606685 83607265 L1PB 1623 + 1028 1575 41769 133 12 17 126 6 1 114 167 134 22 chain 29137 chr9 138394717 + 83607647 83608001 THE1A 353 + 0 353 43141 110 2 1 242 chain 56325 chr9 138394717 + 83608002 83609057 THE1A-int 1579 + 1 761 27481 106 0 3 306 2 1 8 304 0 48 11 12 143 7 0 11 9 17 55 1 7 9 1 0 34 chain 7331 chr9 138394717 + 83609057 83609160 L1PB1 5432 + 5187 5281 76564 32 1 0 17 1 0 13 7 0 32 chain 110699 chr9 138394717 + 83612472 83613842 L1PA8 5853 + 4492 5853 16979 126 0 2 17 1 0 373 6 4 522 0 1 27 1 0 44 3 1 69 18 14 50 1 0 18 2 1 92 chain 24880 chr9 138394717 + 83622102 83622372 AluYb8 318 + 34 302 49475 98 2 0 170 chain 3916 chr9 138394717 + 83639442 83639484 MER4E1 777 + 662 704 92010 42 chain 33386 chr9 138394717 + 83654607 83655045 MER4A1 472 + 0 461 39189 21 4 5 9 1 0 17 0 1 173 5 27 208 chain 8436 chr9 138394717 + 83679219 83679331 LTR54 533 + 323 437 73827 39 0 3 68 1 0 4 chain 5590 chr9 138394717 + 83686814 83686965 Tigger4a 237 + 79 210 82850 26 8 0 10 28 33 23 19 2 37 chain 4356 chr9 138394717 + 83700068 83700184 MER105 203 + 62 181 89139 34 51 54 31 chain 102529 chr9 138394717 + 83712340 83713605 HSMAR1 1287 + 11 1287 18004 105 8 9 16 1 7 546 3 6 513 0 1 73 chain 60916 chr9 138394717 + 83728742 83729392 SVA_D 2077 + 1425 2075 26132 650 chain 3242 chr9 138394717 + 83748822 83748885 MER3 215 + 100 162 97554 21 5 4 16 3 0 11 0 3 7 chain 192262 chr9 138394717 + 83760098 83762886 L1MA2 4263 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0 129 0 4 301 chain 28512 chr9 138394717 + 83847560 83847951 MLT2A1 477 + 0 393 44106 26 0 5 111 4 7 18 2 6 137 0 1 12 1 0 62 10 0 8 chain 3326 chr9 138394717 + 83872497 83872534 MER5C 305 + 103 140 96798 37 chain 137304 chr9 138394717 + 83947512 83949108 SVA_B 1603 + 5 1603 13317 16 9 0 6 1 25 826 4 0 21 1 0 6 0 1 15 4 0 15 2 0 27 4 0 569 1 2 69 chain 5234 chr9 138394717 + 83992943 83993004 HY3 101 + 12 73 84533 61 chain 22352 chr9 138394717 + 84041217 84041495 MER11C 1089 + 0 376 53340 55 1 92 28 0 4 80 0 3 114 chain 4725 chr9 138394717 + 84052872 84052937 MSTC 436 + 371 436 87099 21 1 0 4 0 1 39 chain 17390 chr9 138394717 + 84060303 84060607 MLT1B 390 + 52 360 59366 44 4 6 65 44 47 5 2 0 48 1 2 91 chain 9959 chr9 138394717 + 84062837 84063037 L1PB1 5432 + 5221 5404 70509 16 1 0 44 1 0 15 2 0 6 16 6 19 2 0 5 1 0 14 10 8 16 1 0 22 0 3 9 chain 36287 chr9 138394717 + 84134664 84135115 MLT2A2 560 + 2 560 37221 181 1 0 108 0 98 13 0 11 6 1 0 141 chain 16401 chr9 138394717 + 84164887 84165184 MSTA 426 + 99 405 60517 35 12 19 61 30 30 53 13 12 11 1 4 81 chain 39106 chr9 138394717 + 84183027 84183469 L1PA6 6164 + 5719 6161 35282 442 chain 9294 chr9 138394717 + 84204606 84204862 L1MA4 2864 + 2594 2809 71918 76 4 1 22 87 51 21 19 17 27 chain 5409 chr9 138394717 + 84237125 84237247 L1MC2 1988 + 1621 1745 83661 44 42 44 36 chain 3897 chr9 138394717 + 84246499 84246542 tRNA-Gln-CAG 43 + 0 43 92157 43 chain 182063 chr9 138394717 + 84246753 84248842 L1PA6 6164 + 4045 6151 10493 539 0 11 57 0 5 234 2 1 573 7 8 358 0 1 319 chain 3049 chr9 138394717 + 84300983 84301054 L1MA3 4352 + 4288 4352 99298 29 2 1 10 13 7 17 chain 47584 chr9 138394717 + 84344086 84345038 MER4E1 777 + 0 777 30447 25 2 0 64 311 0 53 0 2 74 0 141 8 0 1 68 0 1 103 2 0 5 10 5 227 chain 11063 chr9 138394717 + 84408949 84409183 LTR12C 1709 + 771 1211 68465 66 76 75 65 0 207 27 chain 51292 chr9 138394717 + 84522208 84522840 PABL_A 660 + 0 660 29133 74 0 16 174 0 2 174 5 15 205 chain 289604 chr9 138394717 + 84625974 84629295 L1PA5 6144 + 2803 6144 7140 355 0 1 82 0 9 138 1 2 928 0 27 512 3 0 40 41 21 379 0 4 456 0 1 386 chain 23804 chr9 138394717 + 84748960 84749240 AluSp 311 + 10 294 51098 29 0 4 251 chain 7999 chr9 138394717 + 84864308 84864500 L1PB1 5432 + 5258 5430 74889 22 1 0 17 2 0 5 1 0 9 9 0 15 17 15 5 2 0 27 0 2 16 1 0 13 1 0 17 2 0 5 1 0 4 chain 5240 chr9 138394717 + 85008343 85008418 MADE1 96 + 1 93 84502 25 0 1 16 1 17 33 chain 114408 chr9 138394717 + 85068603 85070176 THE1B-int 1605 + 0 1600 16487 24 11 10 217 2 1 17 10 9 129 0 5 5 1 0 15 0 25 203 83 86 388 5 2 43 1 2 419 chain 25265 chr9 138394717 + 85102530 85102802 AluYa5 310 + 36 309 48844 126 0 1 146 chain 83817 chr9 138394717 + 85131793 85132781 L1PA6 6164 + 5162 6151 20843 150 0 4 278 3 0 557 chain 101104 chr9 138394717 + 85164970 85166057 L1PA2 6032 + 4944 6030 18168 324 1 0 762 chain 44081 chr9 138394717 + 85195758 85196226 L1PA2 6032 + 5562 6030 32095 468 chain 15341 chr9 138394717 + 85289515 85289821 LTR12C 1709 + 932 1203 61864 176 41 10 15 56 52 18 chain 1370 chr9 138394717 + 85289856 85289889 LTR12C 1709 + 1035 1068 67224 33 chain 23880 chr9 138394717 + 85315581 85315955 THE1C 375 + 0 355 50980 44 0 1 34 64 45 226 1 0 5 chain 5347 chr9 138394717 + 85422565 85422659 MLT1H 522 + 61 165 83969 51 4 5 11 6 15 22 chain 530471 chr9 138394717 + 85433096 85439555 L1PA7 6471 + 0 6468 1807 97 0 1 305 0 2 65 24 0 386 1 2 471 0 1 63 0 3 345 0 1 95 0 1 82 0 7 122 2 0 598 0 1 316 0 4 241 0 1 54 7 13 223 1 0 49 0 4 16 0 3 194 0 1 19 0 3 46 0 1 692 0 1 70 0 9 26 0 1 605 0 1 275 32 13 219 1 2 200 5 6 512 chain 4277 chr9 138394717 + 85458238 85458286 MLT1C 463 + 57 105 89637 48 chain 35270 chr9 138394717 + 85458319 85458761 LTR7 482 + 0 470 37848 16 5 0 245 0 31 127 12 14 37 chain 306527 chr9 138394717 + 85458775 85462683 HERVH-int 3825 + 0 3823 6688 532 66 0 38 1 0 10 1 0 24 112 0 15 1 0 12 3 0 25 1 0 4 42 0 38 84 1 28 2 0 51 0 1 444 15 0 462 4 31 290 0 4 1110 8 218 485 chain 2674 chr9 138394717 + 85459340 85459368 HERVH-int 3825 + 504 532 102473 28 chain 4997 chr9 138394717 + 85459448 85459559 HERVH-int 3825 + 618 683 79070 11 24 0 28 22 0 26 chain 38554 chr9 138394717 + 85466495 85466944 LTR7 482 + 0 482 35673 264 0 31 124 12 14 49 chain 127733 chr9 138394717 + 85573071 85574484 SVA_D 2077 + 6 2077 14321 27 4 0 821 0 661 515 0 1 46 chain 4924 chr9 138394717 + 85601835 85601962 L1M2 1805 + 200 350 86025 12 16 10 38 27 56 34 chain 19489 chr9 138394717 + 85656977 85657194 L1PA2 6032 + 5816 6032 57045 196 1 0 20 chain 3873 chr9 138394717 + 85685519 85685568 L1MEf 1413 + 946 998 92328 39 0 3 10 chain 8187 chr9 138394717 + 85696727 85696863 Charlie1a 1436 + 803 948 74448 35 15 23 37 4 5 45 chain 19802 chr9 138394717 + 85707829 85708068 L1PA7 6471 + 6226 6465 56674 239 chain 350111 chr9 138394717 + 85758876 85762765 L1PA5 6144 + 2235 6128 5910 969 0 3 987 0 2 209 5 0 892 0 4 827 chain 32235 chr9 138394717 + 85812369 85812714 L1PA2 6032 + 4622 4967 40161 345 chain 35992 chr9 138394717 + 85853022 85853488 L1PB1 5432 + 4039 4499 37418 172 1 0 202 1 0 8 0 1 26 5 0 51 chain 21157 chr9 138394717 + 85855730 85856106 THE1D 372 + 2 372 54938 11 0 2 31 9 0 115 1 0 7 57 56 44 4 5 67 1 0 9 0 3 20 chain 4361 chr9 138394717 + 85868198 85868246 L1PA16 3655 + 3424 3472 89108 48 chain 31792 chr9 138394717 + 85884093 85884510 HERVH-int 3825 + 2970 3390 40505 46 1 0 70 0 3 264 13 14 23 chain 3033 chr9 138394717 + 85919975 85920012 MER5B 177 - 140 177 99473 37 chain 22163 chr9 138394717 + 85935997 85936265 AluSp 311 + 43 311 53620 268 chain 21315 chr9 138394717 + 85937180 85937530 MER61F 604 + 62 420 54748 35 15 13 4 1 0 17 14 12 85 11 20 100 1 0 37 0 5 30 chain 11804 chr9 138394717 + 85983663 85983810 L1PA7 6471 + 6307 6455 67198 70 0 1 77 chain 11250 chr9 138394717 + 86103473 86103618 Tigger2 2703 + 2496 2646 68165 71 0 4 70 0 1 4 chain 5961 chr9 138394717 + 86114627 86114736 LTR40b 463 + 355 463 81228 46 26 25 37 chain 9886 chr9 138394717 + 86117841 86117958 MER87B 500 + 9 126 70650 117 chain 23423 chr9 138394717 + 86119834 86120129 AluSc8 310 + 7 305 51719 123 12 15 160 chain 3143 chr9 138394717 + 86125512 86125596 L1ME1 1623 + 1500 1570 98432 22 15 4 15 11 8 21 chain 29291 chr9 138394717 + 86140130 86140485 MER4E1 777 + 5 362 42910 267 0 2 88 chain 34061 chr9 138394717 + 86144751 86145186 MER41A 554 + 13 441 38661 276 14 0 8 0 7 137 chain 547739 chr9 138394717 + 86157088 86163107 L1PA2 6032 + 1 6030 880 71 0 1 183 1 0 3448 0 1 102 0 1 1368 0 4 552 0 1 139 6 9 149 chain 30238 chr9 138394717 + 86166103 86166499 MER51B 395 + 0 388 41814 39 13 0 90 0 2 114 1 0 88 1 5 50 chain 168911 chr9 138394717 + 86188611 86191308 L1PBa 3878 + 1249 3462 11160 197 0 2 21 0 2 137 20 12 39 315 0 16 2 0 66 0 7 70 0 1 4 1 0 205 0 3 422 4 5 6 1 0 171 10 1 30 165 0 48 7 0 76 1 6 244 2 1 16 9 8 6 0 1 75 0 4 71 4 1 190 0 3 46 chain 133544 chr9 138394717 + 86204596 86206118 L1P1 4361 + 2803 4319 13686 362 3 0 12 1 0 973 1 0 155 1 0 14 chain 10101 chr9 138394717 + 86257041 86257213 LTR23 429 + 233 405 70194 47 2 0 15 10 13 31 10 9 57 chain 172741 chr9 138394717 + 86269204 86271102 L1PA3long 6157 + 4259 6157 10966 412 4 3 1297 0 1 185 chain 130007 chr9 138394717 + 86311588 86313126 SVA_D 2077 + 3 2059 14038 7 1 0 9 5 0 16 3 1 15 5 13 661 12 15 21 3 0 117 0 535 373 1 3 202 23 4 64 chain 25997 chr9 138394717 + 86360194 86360565 LTR24C 604 + 18 394 47721 28 0 1 224 8 9 17 0 1 26 12 14 56 chain 7127 chr9 138394717 + 86369580 86369709 LTR24C 604 + 476 604 77172 22 29 28 78 chain 30731 chr9 138394717 + 86375978 86376451 MER9a3 513 + 0 491 41365 18 0 2 80 10 11 68 12 13 66 1 0 38 0 10 102 9 12 4 1 0 9 0 1 24 16 18 15 chain 504949 chr9 138394717 + 86389971 86396127 L1PA6 6164 + 0 6162 2972 165 0 2 215 33 31 36 8 0 10 3 4 100 3 1 5 1 0 227 3 20 255 29 11 436 0 1 94 4 5 32 0 1 390 0 1 171 0 2 101 6 10 140 0 1 96 0 1 613 0 1 9 5 4 512 1 3 595 0 2 1091 0 2 436 1 0 183 0 1 142 1 0 4 chain 31820 chr9 138394717 + 86438037 86438511 MER4A1 472 + 0 471 40478 126 6 5 94 9 7 53 17 15 96 17 19 56 chain 33806 chr9 138394717 + 86460102 86460537 MER57A1 433 + 0 433 38843 122 0 1 169 3 0 141 chain 182866 chr9 138394717 + 86518517 86521929 MER57-int 2662 + 120 2659 10443 40 4 0 79 307 0 75 4 1 104 40 0 80 5 4 173 17 13 74 1 8 185 310 7 230 0 1 4 2 1 44 9 27 129 1 0 72 4 6 194 198 0 234 3 4 235 0 1 187 2 0 7 5 1 80 22 16 53 0 1 17 67 41 6 0 5 24 1 0 6 9 4 32 3 0 34 chain 27766 chr9 138394717 + 86521934 86522339 MER57A1 433 + 0 405 45233 161 9 2 106 13 17 14 21 24 81 chain 2622 chr9 138394717 + 86585182 86585234 MER53 195 + 113 166 102868 18 3 0 5 3 7 23 chain 24876 chr9 138394717 + 86740275 86740577 L1PA4 6152 + 5839 6143 49480 137 1 3 164 chain 46177 chr9 138394717 + 86894697 86895251 MER41A 554 + 0 554 30973 554 chain 125075 chr9 138394717 + 86927757 86930353 L1MA2 4263 + 2259 4114 14688 5 0 1 242 14 9 25 112 10 93 3 0 6 7 14 6 0 1 42 3 0 104 0 3 79 0 3 112 0 8 7 8 0 85 0 10 102 320 0 37 0 2 93 399 76 225 4 3 36 0 1 110 3 0 149 12 10 44 0 1 45 7 0 46 1 0 10 chain 9808 chr9 138394717 + 86992778 86992903 MER30 238 + 118 238 70804 6 5 0 114 chain 2697 chr9 138394717 + 87030289 87030322 U1 164 + 0 32 102364 18 1 0 14 chain 544428 chr9 138394717 + 87041882 87047892 L1PA3long 6157 + 1 6152 1059 23 0 5 123 0 1 623 0 128 3238 0 1 1858 0 6 145 chain 28400 chr9 138394717 + 87132418 87132717 AluYa8 305 + 0 299 44271 299 chain 95493 chr9 138394717 + 87133158 87134358 L1PA8 5853 + 4653 5853 18845 356 0 2 510 0 3 40 1 0 46 8 6 62 2 1 15 6 7 37 5 4 18 1 0 93 chain 4129 chr9 138394717 + 87137177 87137227 MER3 215 + 60 110 90587 50 chain 13961 chr9 138394717 + 87200771 87201062 L1PB1 5432 + 5150 5413 63643 8 4 0 9 2 0 53 2 1 16 1 0 44 3 2 13 3 0 7 13 5 18 4 2 4 1 0 14 2 0 16 9 0 7 0 8 14 1 0 13 1 0 9 chain 14964 chr9 138394717 + 87227710 87227939 MER44A 345 + 96 320 62308 164 30 25 35 chain 6084 chr9 138394717 + 87292476 87292726 L1ME2z 1083 + 353 498 80785 56 105 0 26 47 47 16 chain 19510 chr9 138394717 + 87311450 87311703 L1PB2 3958 + 2207 2464 57007 79 3 7 171 chain 25315 chr9 138394717 + 87321099 87321461 THE1B 368 + 0 367 48761 44 8 23 105 2 1 22 2 0 49 7 0 123 chain 39213 chr9 138394717 + 87410693 87411146 LTR7 482 + 0 482 35205 56 2 0 205 0 31 190 chain 303894 chr9 138394717 + 87411148 87414962 HERVH-int 3825 + 0 3823 6748 532 188 0 38 2 1 9 1 0 9 1 0 14 7 1 15 1 0 12 3 0 25 1 0 65 17 0 8 2 1 38 10 11 36 0 1 407 15 0 462 4 31 290 0 4 443 0 1 666 8 218 485 chain 43764 chr9 138394717 + 87416224 87416706 LTR7 482 + 0 482 32277 482 chain 26925 chr9 138394717 + 87446277 87446620 THE1B 368 + 0 341 46371 172 1 0 20 1 0 149 chain 23638 chr9 138394717 + 87465364 87465661 AluY 311 + 19 310 51369 107 7 0 15 1 2 167 chain 4887 chr9 138394717 + 87465752 87465807 LTR24B 570 + 507 562 86225 55 chain 13564 chr9 138394717 + 87467309 87467501 MER41B 635 + 0 193 64230 120 11 12 61 chain 3087 chr9 138394717 + 87711352 87711420 L1MB3 1562 + 1446 1516 98893 20 1 0 6 1 0 6 10 11 5 0 3 19 chain 86612 chr9 138394717 + 87743791 87744776 L1PA5 6144 + 5138 6126 20297 128 0 1 140 0 1 107 0 1 610 chain 3016 chr9 138394717 + 87754857 87754890 MLT2B4 540 + 505 538 99692 33 chain 13922 chr9 138394717 + 87808228 87808613 MER61D 487 + 113 486 63711 104 24 21 34 142 135 38 11 10 18 1 0 13 chain 531153 chr9 138394717 + 87902138 87908249 L1PA4 6152 + 6 6151 1785 388 2 1 172 9 10 98 0 2 273 0 4 504 0 12 36 0 1 70 0 3 261 0 5 474 9 5 927 0 4 49 0 2 1044 0 4 946 0 1 91 0 1 740 1 0 17 chain 19507 chr9 138394717 + 87983808 87984092 L1PB4 2604 + 2106 2380 57016 235 30 20 19 chain 24263 chr9 138394717 + 88000798 88001153 THE1B 368 + 0 368 50399 19 1 0 153 4 3 23 30 45 125 chain 122276 chr9 138394717 + 88001153 88002718 THE1B-int 1605 + 0 1598 15148 12 3 5 23 0 2 38 0 1 347 1 26 217 0 1 411 1 8 331 5 0 176 chain 8276 chr9 138394717 + 88008725 88008870 MER44B 551 + 427 550 74226 33 7 0 52 10 0 28 1 0 4 4 0 6 chain 18145 chr9 138394717 + 88036452 88036740 MER1B 344 + 41 344 58514 38 25 38 99 4 0 51 16 22 55 chain 181844 chr9 138394717 + 88070511 88073854 L1PB2 3958 + 1269 3835 10506 26 4 8 116 0 2 153 2 0 16 4 0 57 0 3 112 1 2 106 4 1 408 17 19 151 5 0 28 0 3 220 28 6 161 307 0 57 1 0 153 451 7 124 4 8 27 0 1 61 2 0 8 0 2 43 1 4 13 1 0 6 19 7 51 2 0 12 2 0 94 3 2 70 1 0 64 7 6 67 29 37 44 chain 66483 chr9 138394717 + 88210408 88211150 L1PA5 6144 + 3703 4445 24829 742 chain 39036 chr9 138394717 + 88220001 88220465 LTR2 463 + 0 463 35327 356 12 11 96 chain 5334 chr9 138394717 + 88241658 88241723 L1MD2 1676 + 337 402 84038 65 chain 13964 chr9 138394717 + 88254194 88254383 MER47A 366 + 71 264 63637 91 13 17 85 chain 28104 chr9 138394717 + 88286666 88287182 PABL_A 660 + 310 652 44712 174 173 0 85 1 0 83 chain 10397 chr9 138394717 + 88286849 88286975 BC200 147 + 5 131 69625 126 chain 286722 chr9 138394717 + 88297435 88300662 L1PA4 6152 + 2903 6152 7238 140 0 1 821 0 1 91 0 2 898 0 9 688 0 1 262 0 1 164 1 2 24 0 1 132 0 5 6 chain 39875 chr9 138394717 + 88353863 88354417 LTR8 732 + 142 732 34759 13 1 7 141 21 49 150 0 5 19 14 11 195 chain 59024 chr9 138394717 + 88356552 88358748 THE1A-int 1579 + 17 1579 26656 288 0 1 98 1427 791 98 3 2 9 0 1 114 1 2 158 chain 24944 chr9 138394717 + 88368263 88368964 MER61E 571 + 0 389 49362 122 8 9 39 329 20 83 18 14 102 chain 6551 chr9 138394717 + 88374268 88374340 U3 216 + 0 72 79153 72 chain 145027 chr9 138394717 + 88374357 88375994 L1PA5 6144 + 4502 6144 12689 483 4 0 310 1 5 29 0 1 413 0 3 83 0 1 314 chain 9054 chr9 138394717 + 88377214 88377350 LTR8 732 + 571 712 72435 42 15 20 79 chain 50544 chr9 138394717 + 88380517 88381865 MER4E 760 + 0 721 29368 24 1 0 54 0 8 65 12 15 53 9 6 44 24 4 4 1 0 92 8 10 67 1 0 216 610 0 22 5 1 36 chain 4791 chr9 138394717 + 88386551 88386605 MER20 218 + 90 144 86744 54 chain 36514 chr9 138394717 + 88419070 88419568 LTR10F 562 + 0 554 37072 104 15 4 53 0 70 197 3 0 5 0 2 63 4 2 54 chain 3212 chr9 138394717 + 88464633 88464734 Charlie1a 1436 + 768 871 97786 29 1 0 10 46 49 15 chain 38187 chr9 138394717 + 88510555 88511059 LTR10F 562 + 0 562 35916 163 28 0 11 0 80 12 5 11 285 chain 31318 chr9 138394717 + 88513938 88514726 MER41A 554 + 0 477 40876 193 373 0 69 6 7 16 0 1 123 0 60 8 chain 28455 chr9 138394717 + 88561016 88561546 MLT2A1 477 + 0 477 44188 48 0 2 64 1 0 5 0 1 5 12 16 27 1 5 184 24 8 19 102 56 19 1 0 18 chain 4593 chr9 138394717 + 88568235 88568288 MER3 215 + 145 198 87826 53 chain 529747 chr9 138394717 + 88597325 88603478 L1PA6 6164 + 0 6162 1838 94 0 1 836 0 2 320 0 1 380 0 1 578 1 5 221 0 1 495 0 1 190 0 8 55 0 1 8 0 1 816 15 2 716 10 6 428 0 5 990 chain 141608 chr9 138394717 + 88625519 88627046 SVA_F 1814 + 10 1814 12967 204 1 0 601 0 281 32 3 0 42 0 1 10 1 0 633 chain 10528 chr9 138394717 + 88686486 88686618 MER41A 554 + 422 554 69367 132 chain 26262 chr9 138394717 + 88690800 88691153 MER41-int 2638 + 2076 2429 47335 26 4 0 124 3 5 92 1 0 9 0 3 94 chain 2929 chr9 138394717 + 88698589 88698620 MLT1G1 539 + 477 508 100605 31 chain 33589 chr9 138394717 + 88708467 88708910 L1PA8 5853 + 5411 5847 39007 153 1 0 46 2 0 63 20 18 49 2 1 19 2 1 86 chain 4230 chr9 138394717 + 88821668 88821713 MADE1 96 + 0 45 89939 45 chain 18262 chr9 138394717 + 88855994 88856228 MER75B 242 + 0 242 58397 179 0 6 40 0 1 5 0 1 10 chain 317691 chr9 138394717 + 88907471 88911222 L1P2 5180 + 2 4257 6453 86 0 507 192 1 0 6 1 0 162 1 0 17 1 0 849 0 2 500 1 2 520 12 8 1027 8 7 143 4 7 220 chain 16200 chr9 138394717 + 88917052 88917246 MER107 203 + 3 203 60747 159 0 6 35 chain 10863 chr9 138394717 + 88963104 88963292 L1MA7 2200 + 795 985 68756 61 18 19 29 15 16 65 chain 138451 chr9 138394717 + 89017001 89018628 L1PA7 6471 + 4812 6452 13225 7 0 1 559 0 1 234 0 3 136 0 3 343 0 2 36 2 0 186 0 5 124 chain 51687 chr9 138394717 + 89025535 89026616 MER4D1 891 + 50 814 28966 153 0 14 101 14 0 99 2 1 11 1 0 45 347 12 32 9 10 70 0 7 61 1 0 52 14 27 69 chain 61687 chr9 138394717 + 89124064 89124853 L1PA8 5853 + 5072 5853 25945 15 4 0 189 0 2 200 0 1 85 1 0 44 2 0 74 1 0 11 1 0 7 0 1 37 4 3 19 6 5 47 1 0 41 chain 486612 chr9 138394717 + 89128334 89133917 L1PA5 6144 + 565 6140 3499 604 9 0 1133 8 0 205 0 1 454 0 8 1983 0 1 340 1 0 846 chain 116125 chr9 138394717 + 89134543 89136215 MER41-int 2638 + 981 2632 16207 49 1 0 118 17 18 369 5 8 4 1 0 121 1 0 28 1 0 113 0 2 40 2 0 25 14 11 25 6 7 53 17 0 14 3 4 38 3 0 67 3 0 99 3 0 24 3 5 5 2 0 285 10 16 103 chain 11018 chr9 138394717 + 89154164 89154317 MER30 238 + 80 236 68527 27 8 14 69 3 0 46 chain 200126 chr9 138394717 + 89161594 89163757 L1PA2 6032 + 3869 6032 9715 2163 chain 7169 chr9 138394717 + 89198078 89198165 L1PB3 3668 + 3391 3478 77041 87 chain 105936 chr9 138394717 + 89199493 89200706 L1PA4 6152 + 4958 6151 17572 905 13 1 45 9 0 234 0 1 7 chain 111657 chr9 138394717 + 89209221 89210751 LTR12C 1709 + 0 1709 16855 215 3 4 59 17 18 42 7 50 76 0 1 4 32 23 15 0 8 140 0 119 63 1 0 234 0 47 97 44 13 327 0 1 71 1 0 82 chain 118761 chr9 138394717 + 89282249 89283669 LTR12C 1709 + 0 1709 15760 215 4 10 129 0 1 287 1 4 29 0 279 158 1 0 5 3 1 106 0 4 277 1 0 204 chain 38741 chr9 138394717 + 89295341 89295794 LTR19B 566 + 0 450 35535 104 0 1 138 4 0 207 chain 63010 chr9 138394717 + 89302299 89302989 L1PA3long 6157 + 5467 6157 25622 690 chain 41715 chr9 138394717 + 89303996 89304548 LTR19B 566 + 0 566 33543 89 0 5 200 14 12 140 9 8 37 0 9 11 0 3 52 chain 23369 chr9 138394717 + 89326888 89327178 AluY 311 + 8 296 51822 118 0 1 110 8 6 39 1 0 14 chain 24824 chr9 138394717 + 89395147 89395439 AluSp 311 + 4 297 49550 161 0 1 131 chain 4676 chr9 138394717 + 89409199 89409259 L1MC1 2226 + 1987 2045 87397 8 2 0 50 chain 24243 chr9 138394717 + 89565149 89565445 AluSq 315 + 6 304 50428 127 0 2 169 chain 60759 chr9 138394717 + 89584003 89585042 L1PA16 3655 + 1719 2789 26163 76 2 1 50 0 2 153 5 0 6 15 21 101 6 0 77 0 3 173 4 158 6 0 1 17 79 0 27 39 3 58 21 0 11 7 20 106 chain 18076 chr9 138394717 + 89681719 89681947 LTR12C 1709 + 769 1037 58586 68 1 0 139 0 41 20 chain 43269 chr9 138394717 + 89832027 89832737 L1PB3 3668 + 2845 3563 32599 142 2 0 18 9 6 69 20 43 4 1 0 14 4 0 149 1 0 92 1 17 19 4 3 48 0 1 8 20 4 19 13 11 16 3 1 34 chain 27388 chr9 138394717 + 89899853 89900207 THE1A 353 + 0 353 45723 84 0 1 4 1 0 21 1 0 243 chain 301240 chr9 138394717 + 89906604 89910564 L1P2 5180 + 2 4148 6794 82 0 1 3 0 507 192 1 0 6 1 0 291 0 3 280 5 12 668 2 1 1035 321 0 21 14 6 67 5 2 30 0 1 52 0 1 4 1 0 419 1 0 210 0 1 49 0 1 12 0 1 188 chain 22553 chr9 138394717 + 89948177 89948441 L1PA5 6144 + 5885 6142 53040 119 7 0 138 chain 23892 chr9 138394717 + 89953504 89953764 L1PA2 6032 + 5772 6032 50955 260 chain 4164 chr9 138394717 + 90066280 90066338 MADE1 96 - 8 95 90359 16 1 0 4 0 30 37 chain 9385 chr9 138394717 + 90099600 90099771 MER30 238 + 46 238 71731 52 11 0 9 4 33 56 10 13 29 chain 566998 chr9 138394717 + 90149604 90155634 L1HS 6032 + 1 6031 39 6030 chain 487975 chr9 138394717 + 90192189 90197702 L1PA4 6152 + 0 5519 3471 604 0 1 1770 0 1 1086 0 1 52 0 1 736 3 2 1145 0 3 117 chain 356938 chr9 138394717 + 90223642 90227704 HERVE-int 4064 + 0 4063 5836 607 0 1 205 4 1 719 1 2 676 3 0 989 4 0 197 0 10 70 1 0 586 chain 58891 chr9 138394717 + 90331133 90331895 MER4E 760 + 0 752 26706 23 0 1 253 38 26 167 0 1 281 chain 39747 chr9 138394717 + 90412694 90413144 LTR7 482 + 0 482 34857 225 0 1 37 1 32 187 chain 287963 chr9 138394717 + 90413146 90416616 HERVH-int 3825 + 0 3825 7199 462 0 118 19 1 0 5 28 0 15 0 37 43 1 0 56 0 1 8 0 2 12 0 3 442 15 0 462 4 31 308 0 3 1093 8 218 15 20 18 36 10 11 407 chain 44026 chr9 138394717 + 90417868 90418349 LTR7 482 + 0 482 32112 225 0 1 256 chain 119015 chr9 138394717 + 90461428 90462888 L1PA7 6471 + 4995 6460 15693 1012 5 4 141 0 1 57 0 8 56 4 0 34 7 8 81 0 2 5 9 7 49 chain 45430 chr9 138394717 + 90509148 90509701 MER41A 554 + 0 554 31348 378 1 0 92 0 2 82 chain 11299 chr9 138394717 + 90517115 90517504 MER31B 477 + 46 477 68084 32 33 32 24 0 2 8 1 0 5 0 14 19 24 0 18 8 0 26 116 175 52 9 10 14 chain 6559 chr9 138394717 + 90560283 90560476 L1PB1 5432 + 5259 5430 79122 20 4 3 14 2 0 6 16 6 18 31 26 18 1 0 7 0 1 14 1 0 12 1 0 14 1 0 8 1 0 4 chain 10769 chr9 138394717 + 90627868 90628021 L1PA8 5853 + 5696 5847 68921 44 2 1 18 3 2 86 chain 488773 chr9 138394717 + 90686272 90691756 L1PA4 6152 + 0 5486 3450 2386 0 4 608 8 1 1352 0 4 934 0 1 196 chain 6801 chr9 138394717 + 90729962 90730042 LTR12C 1709 + 932 1012 78317 80 chain 19856 chr9 138394717 + 90738017 90738277 THE1C-int 1605 + 1335 1594 56603 238 4 3 18 chain 62622 chr9 138394717 + 90792497 90793179 L1PA3long 6157 + 5461 6144 25727 42 0 1 640 chain 48735 chr9 138394717 + 90853348 90853881 L1PA3long 6157 + 5624 6157 30038 533 chain 4268 chr9 138394717 + 90875001 90875049 MADE1 96 + 48 96 89715 48 chain 22376 chr9 138394717 + 91009789 91010161 MSTA 426 + 0 400 53305 61 5 4 29 17 22 28 0 1 9 0 6 67 25 23 44 3 23 70 2 1 12 chain 220509 chr9 138394717 + 91020672 91023640 L1PB1 5432 + 2360 5302 9027 133 15 5 79 0 5 76 0 2 157 13 12 13 2 0 623 4 0 146 0 2 39 10 11 69 1 0 6 9 5 221 1 0 123 0 1 82 1 0 457 2 0 177 0 6 230 0 1 62 1 2 9 5 0 24 1 0 5 31 24 53 6 5 12 2 1 31 1 0 11 1 0 16 2 0 6 chain 12484 chr9 138394717 + 91051964 91052194 L1MB1 2102 + 88 320 66010 12 0 1 4 1 0 140 54 56 19 chain 6156 chr9 138394717 + 91062867 91062971 LTR40b 463 + 344 459 80517 44 17 28 43 chain 15759 chr9 138394717 + 91079371 91079564 MER4E1 777 + 578 770 61340 111 1 0 81 chain 31378 chr9 138394717 + 91086143 91086576 MLT2A1 477 + 0 477 40829 168 8 5 8 0 1 21 0 1 129 6 35 15 0 2 21 6 0 11 3 23 37 chain 22841 chr9 138394717 + 91092778 91093142 THE1B 368 + 0 368 52603 114 1 0 55 3 0 5 53 62 4 1 0 128 chain 102503 chr9 138394717 + 91093305 91095145 L1M1 2793 + 499 2209 18009 11 16 12 12 11 9 11 2 0 8 3 0 8 1 0 9 1 0 11 154 91 19 55 40 6 2 0 12 19 14 33 1 0 26 2 0 8 1 0 54 15 12 98 1 0 27 1 0 25 0 2 121 1 0 72 4 0 18 13 5 53 0 1 21 0 2 96 9 6 19 13 1 174 1 0 18 0 1 29 5 4 177 3 0 5 1 4 99 0 3 24 6 17 36 13 1 41 1 0 104 chain 5342 chr9 138394717 + 91135406 91135480 L1MB3 1562 + 1265 1335 83994 7 4 0 63 chain 5899 chr9 138394717 + 91150178 91150251 MER34A 573 + 451 524 81492 73 chain 27913 chr9 138394717 + 91204810 91205112 L1PA4 6152 + 5838 6140 45010 302 chain 213253 chr9 138394717 + 91282636 91285057 L1PA5 6144 + 3305 5731 9229 625 1 2 542 0 1 175 3 2 642 1 0 55 0 3 35 2 4 340 chain 30823 chr9 138394717 + 91295301 91295817 Tigger1 2417 + 1820 2350 41295 125 0 2 23 6 12 77 41 46 31 0 1 58 15 16 38 2 0 17 25 26 58 chain 33115 chr9 138394717 + 91320265 91320689 MER57A1 433 + 0 433 39424 48 0 8 66 0 1 156 0 1 4 1 0 149 chain 16496 chr9 138394717 + 91351565 91351834 MER1B 344 + 0 266 60382 16 12 14 30 3 4 17 10 11 125 11 4 45 chain 2431 chr9 138394717 + 91364326 91364377 MER52C 1267 + 170 220 104038 25 14 13 12 chain 2028 chr9 138394717 + 91364931 91364952 MER52C 1267 + 941 962 106164 21 chain 4777 chr9 138394717 + 91370821 91370878 L1PA17 2846 + 2637 2693 86817 13 1 0 43 chain 25580 chr9 138394717 + 91378037 91378417 THE1B 368 + 0 368 48348 172 3 1 12 11 7 52 7 0 95 10 11 18 chain 30749 chr9 138394717 + 91517408 91517878 LTR12F 595 + 0 592 41352 100 0 12 34 2 0 25 0 66 47 26 66 52 27 19 7 2 0 110 0 17 17 1 0 20 chain 4557 chr9 138394717 + 91541060 91541113 L1PA7 6471 + 6417 6470 88032 53 chain 49780 chr9 138394717 + 91541296 91541925 L1PB 1623 + 399 1029 29646 6 0 1 81 1 0 331 5 6 205 chain 26872 chr9 138394717 + 91573434 91573799 THE1B 368 + 0 368 46439 15 2 0 22 0 5 130 5 4 24 2 0 53 1 4 111 chain 4968 chr9 138394717 + 91578101 91578162 MLT1B 390 + 123 185 85815 8 0 1 53 chain 177539 chr9 138394717 + 91612530 91614588 L1PA5 6144 + 4068 6132 10701 71 8 9 1123 6 5 616 0 5 181 0 1 53 chain 77603 chr9 138394717 + 91627393 91628443 MER11C 1089 + 0 1063 22181 247 7 16 54 0 4 65 1 0 171 26 21 112 10 13 34 0 1 5 1 2 119 1 2 54 1 0 117 0 1 25 chain 30306 chr9 138394717 + 91653615 91653986 MLT2A1 477 + 7 383 41756 135 0 1 25 1 5 210 chain 32872 chr9 138394717 + 91694638 91695131 MER1A 529 + 0 529 39612 18 1 26 36 6 15 23 16 17 304 14 21 6 6 0 63 chain 4433 chr9 138394717 + 91716836 91716892 LTR12F 595 + 147 211 88711 30 0 8 26 chain 23649 chr9 138394717 + 91721676 91721968 AluSc8 310 + 11 306 51361 120 0 4 126 0 1 39 2 0 5 chain 5208 chr9 138394717 + 91747902 91748033 L1MA8 2339 + 2105 2214 84638 14 17 0 40 8 6 29 9 6 14 chain 10937 chr9 138394717 + 91862713 91862861 MLT1A 405 + 219 401 68637 29 3 36 26 0 1 90 chain 6875 chr9 138394717 + 91871516 91871816 MLT1G1 539 + 9 296 78053 50 198 184 26 0 1 26 chain 5787 chr9 138394717 + 91933686 91933750 L1MB5 1630 + 1326 1390 81984 64 chain 24330 chr9 138394717 + 91961555 91961854 AluSc 308 + 0 297 50285 20 10 6 246 0 2 23 chain 50899 chr9 138394717 + 91972979 91973674 L1PA11 4918 + 3836 4517 29240 71 2 1 10 0 1 386 0 1 25 6 1 61 2 1 13 3 1 64 2 0 17 2 1 18 4 0 9 chain 29568 chr9 138394717 + 91980558 91980898 HERV17-int 4347 + 2537 2878 42525 181 0 1 159 chain 27879 chr9 138394717 + 91981753 91982077 LTR17 781 + 0 324 45062 324 chain 5383 chr9 138394717 + 92064228 92064294 L1MD1 2063 + 1568 1634 83776 66 chain 40687 chr9 138394717 + 92098026 92098485 HERV-Fc1_LTR3 475 + 0 475 34156 132 0 13 259 0 3 68 chain 11946 chr9 138394717 + 92204119 92204266 MLT1B 390 + 243 390 66926 147 chain 545465 chr9 138394717 + 92214410 92220427 L1PA3long 6157 + 0 6157 1006 70 1 2 81 0 1 623 1 129 3456 0 4 460 1 0 164 0 5 311 0 1 707 0 1 142 chain 3353 chr9 138394717 + 92259436 92259495 MER20 218 + 119 187 96566 25 7 16 27 chain 43544 chr9 138394717 + 92311291 92311992 L1PA15 4387 + 3612 4295 32420 8 0 1 91 4 1 100 2 0 20 12 8 18 3 4 18 5 6 18 3 2 26 1 0 171 1 0 81 1 0 21 4 0 7 9 8 35 17 14 25 chain 73777 chr9 138394717 + 92340512 92341558 MER11C 1089 + 0 1063 23145 247 0 9 7 0 1 53 0 4 65 1 0 130 0 1 15 71 70 88 1 5 4 1 0 38 6 7 120 1 2 54 10 9 134 chain 10103 chr9 138394717 + 92367468 92367608 Tigger4 2445 + 1931 2059 70190 19 12 0 109 chain 11686 chr9 138394717 + 92453611 92453738 L1PA3long 6157 + 2513 2640 67419 127 chain 2903 chr9 138394717 + 92530223 92530280 L1MC1 2226 + 2128 2184 100817 11 1 0 4 0 1 6 6 5 29 chain 3687 chr9 138394717 + 92545792 92546157 LTR12C 1709 + 875 1117 93697 34 111 110 14 162 0 12 6 47 19 1 0 6 chain 4495 chr9 138394717 + 92681473 92681523 MLT2B4 540 + 70 120 88364 50 chain 82262 chr9 138394717 + 92754584 92755635 MER11C 1089 + 6 1073 21189 240 0 9 62 0 4 47 1 0 17 1 0 178 16 15 112 1 5 4 1 0 38 0 1 127 0 1 54 1 0 125 0 1 16 0 1 10 chain 14299 chr9 138394717 + 92768834 92769018 MER41B 635 + 0 185 63201 125 1 2 58 chain 34038 chr9 138394717 + 92799832 92800277 L1PA8 5853 + 5403 5853 38678 118 0 2 39 1 0 46 2 0 70 2 1 12 1 0 45 6 5 19 1 0 37 0 10 46 chain 7406 chr9 138394717 + 92851318 92851432 MER58B 340 + 79 199 76378 19 1 2 6 0 2 67 2 5 19 chain 69846 chr9 138394717 + 92866240 92867627 L1PA8 5853 + 4943 5853 24032 44 2 0 22 0 2 553 1 0 44 2 0 53 1 0 4 0 1 13 1 0 6 5 4 11 2 1 59 472 1 92 chain 24373 chr9 138394717 + 92881335 92881620 AluY 311 + 8 294 50207 124 0 1 161 chain 4850 chr9 138394717 + 92908886 92908945 MER75B 242 + 51 110 86429 59 chain 3347 chr9 138394717 + 92909135 92909170 MER1B 344 + 231 266 96624 35 chain 3421 chr9 138394717 + 93079199 93079239 MER58A 224 + 45 85 95895 40 chain 21410 chr9 138394717 + 93146672 93147033 THE1B 368 + 0 368 54625 111 5 6 50 70 75 100 0 1 25 chain 15535 chr9 138394717 + 93286432 93286914 L1MB1 2102 + 1522 2002 61605 52 101 99 38 0 1 27 63 60 54 5 7 15 1 0 12 57 58 57 chain 20882 chr9 138394717 + 93339307 93339671 THE1D 372 + 0 360 55275 40 15 7 19 23 24 76 31 36 23 1 0 33 1 0 102 chain 39730 chr9 138394717 + 93347587 93348038 LTR7 482 + 1 482 34870 232 1 0 13 1 32 204 chain 294457 chr9 138394717 + 93348040 93351649 HERVH-int 3825 + 0 3824 6998 489 0 56 25 1 0 10 1 0 9 4 0 14 7 1 14 1 0 13 4 42 26 22 0 26 22 0 5 41 0 49 1 0 444 15 0 462 12 39 1396 4 214 19 20 18 453 chain 39085 chr9 138394717 + 93352899 93353336 LTR7 482 + 0 474 35299 230 0 31 66 0 6 141 chain 84251 chr9 138394717 + 93360538 93361600 MER4-int 2692 + 189 1251 20758 17 0 1 136 5 3 317 19 18 251 1 0 265 4 7 47 chain 6594 chr9 138394717 + 93375555 93375631 U6 107 + 0 76 78989 76 chain 17824 chr9 138394717 + 93398056 93398394 THE1B 368 + 0 342 58857 92 3 6 66 78 80 62 7 6 30 chain 4478 chr9 138394717 + 93459703 93459755 MER20 218 + 33 85 88449 52 chain 6949 chr9 138394717 + 93461747 93461832 Tigger4a 237 + 37 122 77779 85 chain 8008 chr9 138394717 + 93561981 93562090 MER85 139 + 8 139 74866 65 4 26 40 chain 68789 chr9 138394717 + 93733219 93734268 L1PA13 3608 + 1392 2429 24262 5 0 1 75 56 57 120 0 1 128 9 2 7 0 8 143 1 0 23 1 5 33 10 9 96 1 8 127 48 24 157 1 0 8 chain 58102 chr9 138394717 + 93737158 93737891 L1PA8 5853 + 5125 5853 26932 167 0 2 270 1 0 46 2 0 68 2 1 14 4 3 44 2 1 17 4 3 92 chain 10459 chr9 138394717 + 93766252 93766383 L1MC2 1988 + 1445 1576 69498 131 chain 12757 chr9 138394717 + 93773890 93774225 MLT1B-int 1170 + 240 581 65507 71 8 10 53 48 49 4 1 0 30 78 82 42 chain 153679 chr9 138394717 + 93803217 93805051 L1PA7 6471 + 4605 6467 12131 281 0 30 181 1 2 518 1 0 545 2 0 305 chain 119278 chr9 138394717 + 93805083 93806751 L1PA8A 6298 + 4782 6291 15645 440 2 1 15 8 0 112 0 15 98 0 1 30 1 0 62 6 0 3 41 0 11 1 3 361 0 6 70 0 3 113 138 9 156 chain 27120 chr9 138394717 + 93841920 93842225 L1PA4 6152 + 3312 3619 46094 49 0 2 256 chain 6452 chr9 138394717 + 93878325 93878404 MLT1B 390 + 294 373 79504 79 chain 7355 chr9 138394717 + 93880376 93880479 LTR12C 1709 + 928 1072 76512 55 1 42 47 chain 60155 chr9 138394717 + 93881408 93882248 LTR12C 1709 + 773 1709 26329 37 5 45 171 4 92 97 47 16 82 9 8 105 0 1 198 1 0 84 chain 35224 chr9 138394717 + 93939630 93940111 LTR12F 595 + 0 555 37884 100 0 85 25 14 5 86 8 6 16 0 1 66 2 0 88 1 2 75 chain 176351 chr9 138394717 + 93969544 93974319 HERVL-int 5654 + 0 2180 10760 98 0 10 7 320 1 838 0 1 132 2295 0 571 0 4 234 1 9 234 5 1 40 chain 43125 chr9 138394717 + 93986195 93986750 LTR10A 586 + 0 565 32699 13 0 1 96 0 8 92 1 2 318 0 1 4 1 0 30 chain 62094 chr9 138394717 + 94047371 94048066 L1PA4 6152 + 2941 3636 25845 695 chain 42394 chr9 138394717 + 94137110 94137650 MER41A 554 + 0 547 33133 24 1 0 170 0 2 6 1 2 264 12 17 62 chain 32675 chr9 138394717 + 94204504 94205008 LTR12F 595 + 0 595 39784 79 2 112 19 16 7 125 0 1 43 14 5 16 24 23 62 7 6 97 chain 505469 chr9 138394717 + 94216743 94222523 L1PA5 6144 + 0 5771 2946 263 7 6 900 9 0 1124 9 8 1381 2 0 273 0 4 344 1 0 42 0 2 198 1 0 749 1 0 43 6 7 427 chain 42231 chr9 138394717 + 94225345 94225935 LTR12F 595 + 6 595 33228 73 1 0 24 1 2 24 43 1 15 2 0 28 0 42 173 0 1 206 chain 4675 chr9 138394717 + 94235129 94235181 LTR12_ 688 + 0 52 87409 52 chain 4698 chr9 138394717 + 94245698 94245756 U6 107 + 46 104 87280 58 chain 7468 chr9 138394717 + 94247605 94247806 L1MDa 1598 + 1219 1438 76204 60 14 20 20 70 82 37 chain 32430 chr9 138394717 + 94250613 94251100 LTR3A 482 + 0 478 40011 109 0 1 5 0 1 112 57 47 121 8 7 4 1 0 35 0 1 35 chain 17052 chr9 138394717 + 94506089 94506274 L1PA5 6144 + 5371 5556 59752 185 chain 50631 chr9 138394717 + 94506309 94506891 L1PA5 6144 + 5556 6144 29337 329 1 0 114 0 7 138 chain 123532 chr9 138394717 + 94531441 94532922 L1PA7 6471 + 4775 6456 14927 54 0 1 125 2 0 336 0 190 141 0 8 63 0 1 4 0 2 246 0 1 190 1 0 319 chain 29201 chr9 138394717 + 94539870 94540297 LTR7B 505 + 0 503 43040 105 0 10 60 0 38 12 3 27 27 0 3 39 1 2 42 6 4 19 0 1 19 0 2 31 14 13 49 chain 290479 chr9 138394717 + 94540299 94543846 HERVH-int 3825 + 0 3825 7114 355 5 31 75 0 26 47 5 0 36 1 0 10 1 0 24 28 0 15 0 37 42 44 1 57 0 1 6 0 2 13 0 3 900 8 35 299 0 10 88 0 3 337 0 1 194 0 3 419 9 11 5 0 3 31 4 214 15 6 0 9 3 9 7 0 1 5 1 0 218 0 2 225 chain 27192 chr9 138394717 + 94545090 94545509 LTR7B 505 + 1 503 45977 30 16 18 45 0 3 8 0 10 60 0 38 12 3 27 28 0 2 8 0 4 22 2 3 46 1 0 23 0 1 52 14 13 49 chain 43235 chr9 138394717 + 94566186 94566688 MER9a2 513 + 0 513 32622 378 0 2 27 0 9 97 chain 27162 chr9 138394717 + 94620594 94620917 L1PA7 6471 + 6141 6464 46022 323 chain 31834 chr9 138394717 + 94650487 94650904 LTR7B 505 + 0 489 40468 108 0 10 57 0 38 14 0 24 27 0 2 85 1 0 76 14 13 35 chain 4246 chr9 138394717 + 94680744 94680857 MLT1C 463 + 51 162 89841 37 48 46 28 chain 5482 chr9 138394717 + 94743092 94743160 MER41A 554 + 399 469 83306 9 0 2 59 chain 5122 chr9 138394717 + 94780082 94780228 MER58A 224 + 42 213 85052 32 38 56 13 17 25 41 1 0 4 chain 3881 chr9 138394717 + 94794926 94794989 MLT1I 406 + 336 400 92282 17 7 8 39 chain 24089 chr9 138394717 + 94797151 94797445 AluSc5 308 + 0 295 50663 169 4 5 121 chain 3814 chr9 138394717 + 94825770 94825843 MER131 149 + 25 100 92751 25 13 14 18 0 1 17 chain 73794 chr9 138394717 + 94836956 94838012 L1PB 1623 + 98 1141 23142 4 1 0 4 0 1 5 1 0 5 1 0 14 0 1 39 1 0 4 2 0 11 8 5 76 4 3 17 0 2 108 4 2 59 0 1 26 2 1 106 18 14 289 1 0 47 1 2 5 1 0 192 chain 2979 chr9 138394717 + 94937833 94937867 MADE2 80 + 17 51 100065 34 chain 110667 chr9 138394717 + 95219590 95220873 L1PA6 6164 + 4878 6160 16987 190 1 2 114 1 0 131 1 0 845 chain 536578 chr9 138394717 + 95254281 95260697 L1PA7 6471 + 0 6470 1529 409 0 3 266 12 34 482 0 11 383 1 17 154 2 1 71 7 0 329 0 5 383 0 3 330 0 1 214 0 4 267 0 1 129 1 0 123 1 3 119 11 1 283 0 1 1029 3 1 189 0 1 355 1 0 12 0 3 166 1 0 183 0 5 15 7 5 19 2 0 189 0 1 121 1 0 133 0 3 13 chain 3969 chr9 138394717 + 95303189 95303239 MER3 215 + 116 166 91643 50 chain 7347 chr9 138394717 + 95359206 95359311 L1MB7 1623 + 1067 1175 76527 25 3 6 77 chain 12561 chr9 138394717 + 95386830 95387011 MER30 238 + 47 236 65879 55 12 23 68 3 0 43 chain 8990 chr9 138394717 + 95393001 95393114 Tigger7 736 + 37 150 72577 113 chain 386168 chr9 138394717 + 95399735 95405166 L1PB1 5432 + 36 5422 5382 61 36 49 160 1 0 227 20 13 16 4 0 6 1 5 46 28 32 61 0 1 5 1 0 43 18 16 269 16 15 167 0 2 177 5 3 294 2 0 165 0 1 177 3 0 160 3 0 187 1 0 36 1 2 60 2 0 170 1 5 175 1 0 165 5 0 8 0 1 87 3 4 135 1 0 8 0 1 262 0 1 62 0 1 75 6 7 53 40 23 278 1 0 432 1 0 4 1 2 72 0 4 100 0 2 138 3 5 76 1 0 239 93 81 52 20 18 43 1 0 15 1 0 4 18 8 18 3 1 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 chain 38766 chr9 138394717 + 95519054 95519677 LTR10E 629 + 0 620 35520 35 6 0 123 19 16 89 11 37 24 12 11 41 1 0 109 4 5 42 1 0 16 40 22 50 chain 23362 chr9 138394717 + 95523416 95523766 THE1B 368 + 0 368 51835 64 0 13 87 1 0 5 1 0 20 6 11 9 1 5 18 9 7 129 chain 18600 chr9 138394717 + 95525671 95525889 AluY 311 + 39 258 57994 93 0 1 125 chain 11887 chr9 138394717 + 95628596 95628768 Tigger2a 444 + 184 361 67045 127 14 19 31 chain 36029 chr9 138394717 + 95664637 95665253 LTR12F 595 + 0 583 37399 103 0 1 43 4 92 21 89 0 22 31 7 100 1 0 168 8 0 26 chain 25904 chr9 138394717 + 95671955 95672316 L1PA16 3655 + 3231 3587 47862 59 2 0 191 1 7 7 6 0 83 3 0 9 chain 115058 chr9 138394717 + 95680149 95681529 LTR12C 1709 + 0 1709 16380 224 0 1 425 0 119 68 1 0 39 0 78 158 1 0 5 3 1 106 0 4 297 0 131 53 chain 34369 chr9 138394717 + 95688003 95688548 L1PA15 4387 + 3843 4366 38450 48 3 1 40 1 0 168 6 5 25 1 0 57 1 0 25 4 0 5 1 0 50 6 3 44 3 1 11 9 4 26 1 0 10 chain 23621 chr9 138394717 + 95695598 95695962 THE1D 372 + 0 357 51395 13 0 2 41 31 22 88 19 16 8 0 3 164 chain 565819 chr9 138394717 + 95697585 95703604 L1HS 6032 + 6 6032 74 680 0 3 5177 0 4 162 chain 7202 chr9 138394717 + 95729719 95729875 LTR12 884 + 228 392 76941 42 10 35 31 23 8 33 5 3 12 chain 5099 chr9 138394717 + 95763976 95764034 MER20 218 + 102 160 85166 58 chain 5233 chr9 138394717 + 95804020 95804156 LTR12F 595 + 104 255 84536 21 8 24 28 17 8 16 19 27 27 chain 11912 chr9 138394717 + 95832823 95832961 L1PA7 6471 + 6327 6465 66976 138 chain 35936 chr9 138394717 + 95847255 95848625 MER41A 554 + 0 554 37450 112 7 6 69 901 87 44 1 0 236 chain 4430 chr9 138394717 + 95859913 95859960 U2 167 + 6 53 88727 47 chain 21105 chr9 138394717 + 95890950 95891225 AluSp 311 + 20 290 55005 151 1 0 95 9 5 19 chain 4813 chr9 138394717 + 95905035 95905088 5S 121 + 31 84 86631 53 chain 99780 chr9 138394717 + 95958642 95959740 L1PA3long 6157 + 4260 5360 18323 430 2 0 620 0 4 46 chain 29192 chr9 138394717 + 96030009 96030794 LTR12F 595 + 0 593 43057 101 0 1 21 28 92 35 24 0 37 7 71 32 8 0 117 301 0 23 9 21 42 chain 88685 chr9 138394717 + 96076137 96077142 LTR13 1007 + 0 1007 19908 73 2 0 231 1 0 43 0 1 452 0 2 123 0 2 80 chain 43272 chr9 138394717 + 96101447 96101998 MER41A 554 + 0 554 32595 82 10 11 131 0 1 78 5 6 245 chain 15863 chr9 138394717 + 96148154 96148372 MER30 238 + 0 238 61213 103 8 28 107 chain 3007 chr9 138394717 + 96150941 96151031 L1MA4 2864 + 2726 2809 99769 12 6 0 22 30 29 20 chain 23407 chr9 138394717 + 96239945 96240238 L1PA8 5853 + 5566 5853 51746 42 2 0 74 1 0 6 1 0 52 2 1 19 1 0 93 chain 8210 chr9 138394717 + 96241199 96241374 MER53 195 + 16 195 74386 52 38 40 22 12 14 51 chain 43752 chr9 138394717 + 96280619 96281158 MER41A 554 + 0 554 32282 314 0 1 72 3 11 28 0 1 41 0 5 81 chain 137652 chr9 138394717 + 96283333 96285879 MER41-int 2638 + 659 2636 13290 149 1 15 68 1 35 53 1 0 58 2 1 52 5 3 187 335 27 15 1 0 5 1 0 8 9 12 159 11 10 266 2 1 68 0 1 13 0 1 9 2 0 20 305 0 10 4 0 153 9 10 156 0 2 154 15 16 55 2 3 182 chain 39521 chr9 138394717 + 96285888 96287060 MER41A 554 + 0 554 35001 171 671 48 249 0 5 81 chain 9333 chr9 138394717 + 96318506 96318674 L1MB2 1706 + 859 1018 71847 32 12 8 4 1 0 29 4 5 56 5 0 25 chain 37677 chr9 138394717 + 96347664 96348180 MER41A 554 + 13 554 36285 149 34 57 99 0 1 54 1 0 23 0 1 141 0 1 15 chain 25146 chr9 138394717 + 96374248 96374549 AluSc 308 + 0 296 49037 20 5 0 276 chain 17164 chr9 138394717 + 96408021 96408214 L1PA5 6144 + 5942 6136 59613 33 0 1 160 chain 44857 chr9 138394717 + 96420848 96421401 MER41A 554 + 0 554 31660 239 1 0 35 0 1 155 0 1 123 chain 4075 chr9 138394717 + 96438654 96438721 L1MC1 2226 + 1991 2047 90923 16 12 1 39 chain 20278 chr9 138394717 + 96563374 96563675 AluSp 311 + 4 303 56040 26 41 43 210 4 0 20 chain 47597 chr9 138394717 + 96582146 96582727 LTR10C 591 + 0 591 30440 245 4 12 258 0 2 74 chain 2943 chr9 138394717 + 96602102 96602138 MLT1I 406 + 0 35 100472 25 1 0 10 chain 43279 chr9 138394717 + 96669886 96670399 MER9a3 513 + 0 513 32591 18 0 1 237 1 0 116 1 0 40 1 0 4 0 1 69 0 1 26 chain 62597 chr9 138394717 + 96677570 96678267 L1PA5 6144 + 5438 6135 25733 17 0 1 575 1 0 104 chain 5584 chr9 138394717 + 96742581 96742647 THE1C 375 + 2 68 82883 66 chain 10385 chr9 138394717 + 96762010 96762193 L1PB1 5432 + 5255 5423 69647 25 1 0 16 6 1 30 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 14 1 0 5 chain 558316 chr9 138394717 + 96797005 96803172 L1PA3long 6157 + 1 6143 233 852 4 5 581 0 1 879 0 1 1019 30 0 288 0 1 318 0 1 595 0 1 1380 1 0 220 chain 245749 chr9 138394717 + 96823872 96826555 L1PA3long 6157 + 3462 6154 8336 1822 0 4 16 0 4 792 0 1 53 chain 7307 chr9 138394717 + 96830735 96831072 L1MDa 1598 + 406 783 76642 28 76 79 6 0 6 37 109 126 33 17 31 31 chain 122126 chr9 138394717 + 96865585 96867148 THE1B-int 1605 + 0 1598 15175 197 0 5 99 1 0 5 1 2 100 18 43 225 0 1 455 4 8 38 4 3 34 0 1 382 chain 24741 chr9 138394717 + 96867154 96867524 THE1B 368 + 0 368 49669 44 1 16 101 11 13 20 2 1 4 0 2 135 20 0 32 chain 4199 chr9 138394717 + 96886220 96886266 L1MDa 1598 + 1123 1169 90125 46 chain 28946 chr9 138394717 + 96894021 96894353 L1PA5 6144 + 5812 6144 43409 332 chain 48104 chr9 138394717 + 96905056 96906006 MER41B 635 + 0 635 30258 127 1 2 332 9 7 43 315 0 49 5 6 69 chain 23094 chr9 138394717 + 96921258 96921555 AluSc8 310 + 10 300 52218 14 4 0 107 0 4 154 7 0 11 chain 39398 chr9 138394717 + 96985819 96986365 MER41A 554 + 0 553 35081 53 0 1 62 1 0 6 4 8 178 0 1 75 0 1 83 8 13 17 20 16 39 chain 49743 chr9 138394717 + 96988900 96989865 PABL_A 660 + 2 660 29659 85 321 0 111 0 3 77 0 1 15 0 1 142 0 8 54 4 5 156 chain 53995 chr9 138394717 + 97018784 97019418 L1PA6 6164 + 5469 6156 28229 86 0 3 356 0 50 192 chain 20676 chr9 138394717 + 97173752 97174077 LTR76 689 + 365 681 55527 24 2 0 8 2 1 77 0 6 33 6 0 83 4 3 39 2 0 8 5 4 16 2 0 14 chain 554993 chr9 138394717 + 97205150 97211302 L1PA3long 6157 + 5 6157 413 200 7 1 840 1 0 45 11 14 391 0 1 176 0 1 719 0 1 3429 0 1 214 0 1 60 1 0 58 chain 41588 chr9 138394717 + 97214493 97214957 LTR7 482 + 0 474 33632 211 0 10 253 chain 257541 chr9 138394717 + 97214967 97218379 HERVH-int 3825 + 0 3120 8044 449 108 0 49 39 33 14 0 1 24 2 1 9 1 0 24 28 0 11 4 41 42 2 1 57 0 1 6 0 2 14 0 3 441 15 0 64 215 0 398 4 31 299 0 10 84 0 2 1009 chain 4100 chr9 138394717 + 97215460 97215511 HERVH-int 3825 + 449 498 90778 40 2 0 9 chain 43325 chr9 138394717 + 97219532 97220014 LTR7 482 + 0 482 32545 482 chain 8344 chr9 138394717 + 97229232 97229336 L1PB4 2604 + 2307 2411 74041 104 chain 73920 chr9 138394717 + 97232135 97233093 LTR5_Hs 974 + 0 960 23114 166 23 16 6 0 7 101 6 0 163 0 4 196 0 1 15 0 1 34 0 2 248 chain 3613 chr9 138394717 + 97269173 97269214 LTR76 689 + 229 270 94323 41 chain 89370 chr9 138394717 + 97340369 97341376 LTR13 1007 + 0 1007 19786 200 0 1 103 1 0 703 chain 8630 chr9 138394717 + 97383932 97384163 MER21B 843 + 479 713 73388 9 5 0 50 79 72 34 13 28 41 chain 6907 chr9 138394717 + 97394850 97394937 MLT1B 390 + 23 110 77930 87 chain 14659 chr9 138394717 + 97425354 97425608 Tigger3a 397 + 139 396 62725 29 7 8 128 48 50 42 chain 12261 chr9 138394717 + 97451604 97451948 MER21B 843 + 471 827 66348 12 2 6 38 91 101 71 26 32 14 10 8 49 3 0 6 4 1 18 chain 3629 chr9 138394717 + 97453305 97453371 Tigger3b 1229 + 20 82 94197 21 14 10 31 chain 272873 chr9 138394717 + 97453618 97457367 L1PA8A 6298 + 2399 5880 7635 108 5 0 252 5 9 210 296 6 214 1 2 57 0 4 128 26 28 24 0 4 306 0 1 113 2 0 12 0 3 9 0 1 316 1 2 673 0 1 42 5 1 120 4 5 13 0 4 264 2 7 110 9 5 35 0 3 77 0 2 50 4 0 59 4 8 87 3 0 27 0 1 71 0 2 5 chain 3746 chr9 138394717 + 97514417 97514464 MER45C 884 + 99 147 93287 37 0 1 10 chain 107160 chr9 138394717 + 97574036 97575455 LTR12C 1709 + 0 1709 17417 338 0 43 83 5 7 179 0 278 145 0 1 35 12 9 97 44 13 318 0 1 72 17 16 74 chain 28000 chr9 138394717 + 97620057 97620429 THE1B 368 + 0 368 44864 172 2 1 20 2 0 56 2 1 118 chain 49083 chr9 138394717 + 97620430 97621042 THE1B-int 1605 + 1 657 29915 293 2 0 63 0 21 52 1 26 201 chain 11013 chr9 138394717 + 97672613 97672827 Tigger2a 444 + 0 244 68536 33 63 81 85 0 3 14 0 9 19 chain 9189 chr9 138394717 + 97692752 97692904 MER1A 529 + 357 504 72140 65 1 0 34 5 0 6 16 17 25 chain 12350 chr9 138394717 + 97712743 97712929 MER30 238 + 36 238 66226 62 21 40 57 3 0 43 chain 20654 chr9 138394717 + 97778551 97778888 THE1C 375 + 0 363 55560 70 0 14 21 9 10 71 0 1 7 45 55 114 chain 26761 chr9 138394717 + 97778900 97779243 THE1C-int 1605 + 0 402 46599 14 1 3 79 0 57 249 chain 146272 chr9 138394717 + 97795943 97797652 SVA_D 2077 + 133 2071 12594 392 39 0 128 0 37 34 0 3 181 2 0 1 0 152 42 0 78 207 0 1 4 9 8 670 chain 8119 chr9 138394717 + 97839825 97839974 L1MC2 1988 + 1766 1907 74589 8 5 0 21 19 20 32 4 0 60 chain 5338 chr9 138394717 + 97882492 97882561 MER41B 635 + 481 548 84017 47 2 0 20 chain 5452 chr9 138394717 + 97886714 97886796 Tigger1 2417 + 54 136 83454 49 6 5 9 0 1 18 chain 8338 chr9 138394717 + 97915689 97915790 HY1 111 + 0 102 74063 74 0 1 27 chain 124647 chr9 138394717 + 98007012 98008959 Charlie3 2679 + 858 2679 14753 32 2 1 108 2 0 49 33 4 56 11 0 189 0 1 40 1 2 42 1 0 44 0 1 148 0 3 25 0 3 53 0 3 12 4 9 150 231 137 28 11 10 227 1 0 17 1 0 161 2 0 58 1 0 81 0 3 48 2 0 76 chain 19044 chr9 138394717 + 98032463 98032928 L1MD1 2063 + 1483 1903 57504 45 1 0 22 6 0 41 1 0 19 0 1 35 9 10 31 8 9 25 4 1 18 4 0 30 131 98 35 chain 23530 chr9 138394717 + 98065675 98065960 THE1A 353 + 6 290 51538 103 2 1 180 chain 3558 chr9 138394717 + 98089095 98089175 LTR36 617 + 16 111 94764 34 27 42 19 chain 3210 chr9 138394717 + 98125203 98125241 MIRb 242 + 69 107 97795 38 chain 25839 chr9 138394717 + 98174509 98174873 THE1D 372 + 0 372 47957 159 28 35 76 0 1 101 chain 99224 chr9 138394717 + 98319885 98320982 L1PA3long 6157 + 5054 6151 18385 1097 chain 22478 chr9 138394717 + 98384348 98384622 AluSp 311 + 40 311 53150 250 3 0 21 chain 91539 chr9 138394717 + 98424053 98425049 L1PA3long 6157 + 3717 4712 19409 175 1 0 820 chain 126579 chr9 138394717 + 98463648 98465134 SVA_A 1864 + 15 1864 14469 647 3 0 33 0 37 34 0 2 41 3 0 69 2 332 654 chain 538457 chr9 138394717 + 98508283 98514399 L1PA3long 6157 + 4 6142 1428 446 20 14 15 13 14 211 1 8 273 1 0 1602 0 16 612 1 0 1053 0 3 1487 0 3 241 0 6 6 6 0 128 chain 9024 chr9 138394717 + 98528014 98528138 MER33 330 + 167 290 72507 85 4 3 35 chain 40597 chr9 138394717 + 98585202 98585651 L1PA4 6152 + 5703 6151 34226 16 1 0 432 chain 51241 chr9 138394717 + 98638452 98639093 PABL_A 660 + 0 660 29151 31 0 10 76 1 5 179 1 3 121 0 2 53 0 1 179 chain 39643 chr9 138394717 + 98655527 98655989 L1PA7 6471 + 5999 6464 34931 11 0 2 293 3 4 155 chain 55839 chr9 138394717 + 98680983 98681592 L1PA2 6032 + 5410 6028 27616 362 0 4 110 0 1 43 0 4 94 chain 38261 chr9 138394717 + 98684931 98685451 MLT2A2 560 + 0 529 35873 169 12 11 100 1 0 21 0 1 4 4 3 96 1 12 112 chain 143989 chr9 138394717 + 98737250 98739258 L1PB1 5432 + 3452 5420 12772 22 0 36 217 5 0 386 1 0 326 0 1 4 0 1 100 3 1 80 3 0 170 0 1 7 0 2 9 31 19 264 1 0 5 1 2 9 1 0 23 27 21 9 2 0 5 22 0 32 19 17 15 1 0 33 1 0 12 1 0 12 18 4 29 9 6 14 2 0 27 0 2 6 3 0 10 1 0 13 1 0 16 chain 3572 chr9 138394717 + 98748412 98748642 MLT1J 494 + 56 286 94645 4 1 0 19 167 168 39 chain 13780 chr9 138394717 + 98759651 98759928 L1MA5A 2387 + 2052 2306 63911 56 1 0 28 30 28 30 5 6 15 3 0 11 22 6 14 1 0 50 1 0 10 chain 19005 chr9 138394717 + 98770026 98770373 THE1B 368 + 0 368 57545 44 0 5 13 6 8 11 4 5 83 6 5 27 12 17 10 14 23 24 0 1 30 14 13 49 chain 22236 chr9 138394717 + 98850981 98851297 MER4D0 881 + 554 881 53497 88 10 0 7 4 1 29 1 22 7 0 2 46 0 1 124 chain 56327 chr9 138394717 + 98891163 98891819 L1PA7 6471 + 5803 6457 27479 473 0 2 118 11 7 54 chain 3246 chr9 138394717 + 99028327 99028365 L1PB1 5432 + 5241 5279 97512 38 chain 61150 chr9 138394717 + 99100031 99100759 L1PA7 6471 + 5748 6468 26073 147 8 0 302 0 1 115 0 1 145 2 0 9 chain 20407 chr9 138394717 + 99165662 99166037 THE1C 375 + 0 375 55876 15 3 1 31 1 2 64 8 7 42 72 75 113 1 0 25 chain 77708 chr9 138394717 + 99246826 99247671 L1PA3long 6157 + 5311 6157 22161 733 0 1 112 chain 24988 chr9 138394717 + 99273667 99273961 L1PA6 6164 + 5867 6162 49302 135 1 2 158 chain 47602 chr9 138394717 + 99301911 99302535 MER41B 635 + 0 635 30436 128 0 1 19 0 1 302 20 19 57 0 3 49 0 7 49 chain 6059 chr9 138394717 + 99416626 99416718 MER53 195 - 97 195 80872 15 3 0 22 1 0 37 0 10 14 chain 114608 chr9 138394717 + 99498741 99500000 L1HS 6032 + 1 1262 16457 481 1 2 542 0 1 235 chain 438012 chr9 138394717 + 99500000 99504759 L1PA2 6032 + 1262 6030 4605 2963 0 4 1783 1 6 12 chain 4797 chr9 138394717 + 99589580 99589716 MER46C 351 + 179 316 86716 17 62 63 57 chain 9413 chr9 138394717 + 99614666 99614805 MSTA 426 + 269 426 71671 31 0 5 8 10 22 34 0 1 56 chain 6742 chr9 138394717 + 99635865 99635952 L1PB4 2604 + 2465 2552 78504 87 chain 91764 chr9 138394717 + 99652276 99653615 L1PREC2 3366 + 226 1567 19374 6 1 0 12 2 1 12 3 1 30 2 1 70 6 10 53 4 2 46 2 1 50 5 6 99 0 2 235 18 22 97 1 0 265 8 8 45 0 1 9 2 1 9 18 21 15 3 0 211 chain 40194 chr9 138394717 + 99669780 99670222 LTR7 482 + 0 473 34522 264 0 31 178 chain 289664 chr9 138394717 + 99670233 99674187 HERVH-int 3825 + 0 3819 7138 212 0 11 266 2 0 11 23 22 10 5 0 38 64 0 10 1 0 24 28 0 15 1 0 12 3 0 25 169 0 41 1 0 24 117 9 49 1 0 240 0 1 203 15 0 218 0 1 157 0 5 77 8 35 225 0 1 699 0 1 428 10 12 38 0 210 109 3 0 6 1 4 143 3 8 219 chain 2121 chr9 138394717 + 99670800 99670822 HERVH-int 3825 + 450 472 104120 22 chain 3101 chr9 138394717 + 99670825 99670863 HERVH-int 3825 + 531 570 98787 14 0 1 24 chain 2334 chr9 138394717 + 99671027 99671080 HERVH-int 3825 + 657 709 104533 12 7 7 22 2 1 10 chain 2462 chr9 138394717 + 99671218 99671249 HERVH-int 3825 + 680 710 89576 17 1 0 13 chain 40525 chr9 138394717 + 99675450 99675901 LTR7 482 + 0 482 34291 264 0 31 187 chain 25562 chr9 138394717 + 99679772 99680110 THE1C 375 + 1 375 48385 212 6 41 65 0 1 55 chain 8079 chr9 138394717 + 99715832 99715937 MSTD 398 + 77 202 74675 57 0 20 48 chain 44446 chr9 138394717 + 99747168 99747740 MER41A 554 + 0 554 31858 213 32 14 327 chain 29200 chr9 138394717 + 99797120 99797435 AluYb8 318 + 0 313 43045 132 2 0 181 chain 5389 chr9 138394717 + 99891013 99891079 FAM 185 + 97 163 83746 66 chain 6013 chr9 138394717 + 99899126 99899208 L1M1 2793 + 2577 2661 81026 7 0 2 7 0 1 35 1 0 32 chain 75322 chr9 138394717 + 99952203 99953037 L1PA3long 6157 + 5320 6157 22765 663 1 3 56 0 1 114 chain 27750 chr9 138394717 + 99983288 99983580 AluYb8 318 + 25 317 45249 292 chain 517644 chr9 138394717 + 99988561 99994644 L1PA6 6164 + 0 6147 2386 367 4 0 145 1 0 120 0 3 184 0 15 296 5 22 105 0 5 172 1 6 271 0 5 1249 3 5 336 1 0 405 0 1 653 3 7 274 3 4 35 0 1 626 0 8 168 0 3 261 1 2 4 1 0 389 chain 4439 chr9 138394717 + 100055261 100055360 L1MA3 4352 + 4178 4275 88663 51 31 29 17 chain 22823 chr9 138394717 + 100061170 100061447 AluSc 308 + 10 283 52626 54 3 0 193 1 0 26 chain 4319 chr9 138394717 + 100064685 100064735 Tigger3b 1229 + 42 92 89374 50 chain 171528 chr9 138394717 + 100067156 100069306 SVA_D 2077 + 0 2077 11019 667 0 77 176 1 0 24 19 8 68 76 49 187 61 0 73 48 0 59 0 1 4 16 15 134 1 0 529 1 0 6 chain 6361 chr9 138394717 + 100068111 100068187 SVA_D 2077 + 1120 1196 32272 76 chain 5106 chr9 138394717 + 100068374 100068435 SVA_D 2077 + 1432 1481 32272 27 12 0 22 chain 3977 chr9 138394717 + 100068508 100068556 SVA_D 2077 + 937 975 49511 10 10 0 28 chain 335340 chr9 138394717 + 100074353 100079018 HERVL-int 5654 + 1561 5654 6138 157 0 2 2139 0 7 14 0 15 218 1 0 644 0 6 117 0 13 235 0 13 78 22 0 58 0 3 84 0 3 11 0 2 10 4 0 18 622 0 20 0 12 46 0 1 167 chain 6312 chr9 138394717 + 100082295 100082368 L1PA8 5853 + 5772 5845 79955 73 chain 11388 chr9 138394717 + 100089016 100089297 Tigger7 736 + 68 372 67939 54 54 53 26 52 75 20 1 2 74 chain 518637 chr9 138394717 + 100177036 100183281 L1PA7 6471 + 210 6467 2333 193 0 1 28 1 0 1078 8 0 115 2 1 133 1 0 145 1 0 4 0 1 13 0 2 151 0 1 471 1 0 94 2 0 455 0 4 324 0 10 73 0 1 21 3 1 13 15 17 645 0 1 222 0 10 238 0 4 564 0 1 358 0 4 7 0 3 51 20 0 93 3 0 99 0 1 26 0 1 151 0 4 93 0 1 330 chain 10740 chr9 138394717 + 100382952 100383087 MSTC 436 + 0 139 68971 15 0 4 120 chain 43010 chr9 138394717 + 100384437 100384987 MER41A 554 + 2 554 32766 166 0 1 197 7 8 180 chain 136890 chr9 138394717 + 100392236 100393882 SVA_A 1864 + 28 1864 13347 97 6 17 261 0 116 294 0 73 100 3 0 131 22 20 7 1 0 56 10 8 37 3 1 618 chain 19674 chr9 138394717 + 100396665 100396888 AluY 311 + 61 284 56816 223 chain 550350 chr9 138394717 + 100527228 100533251 L1PA2 6032 + 1 6032 719 71 0 1 183 1 0 2168 1 0 608 0 8 1546 3 0 590 0 4 852 chain 201276 chr9 138394717 + 100646749 100649029 L1PA5 6144 + 2981 5260 9674 255 0 1 440 3 0 13 0 1 1569 chain 3378 chr9 138394717 + 100652753 100652802 MADE1 96 + 29 94 96318 13 1 17 35 chain 125404 chr9 138394717 + 100656394 100657968 THE1A-int 1579 + 0 1579 14644 571 8 6 142 4 13 7 9 0 597 1 0 31 3 11 201 chain 27935 chr9 138394717 + 100657968 100658316 THE1A 353 + 0 345 44976 83 1 0 27 1 0 88 1 0 147 chain 36986 chr9 138394717 + 100688778 100689236 LTR2 463 + 0 463 36742 61 0 3 298 12 13 57 0 1 30 chain 554014 chr9 138394717 + 100690713 100696736 L1PA2 6032 + 0 6025 480 317 1 0 275 0 1 3333 0 1 841 0 1 1256 chain 24718 chr9 138394717 + 100700268 100700555 L1PA7 6471 + 6184 6470 49696 124 0 1 152 2 0 9 chain 28616 chr9 138394717 + 100756729 100757083 THE1A 353 + 0 353 43925 106 5 4 243 chain 90454 chr9 138394717 + 100765406 100766399 L1PA3long 6157 + 4293 5286 19595 993 chain 321093 chr9 138394717 + 100777638 100781293 L1PA5 6144 + 2481 6136 6382 511 1 0 40 1 0 136 0 1 25 1 0 6 0 2 480 1 0 248 1 2 2204 chain 33467 chr9 138394717 + 100789781 100790158 L1PA5 6144 + 5755 6132 39118 55 0 1 220 1 0 101 chain 308506 chr9 138394717 + 100798215 100801686 L1PA5 6144 + 2667 6144 6650 535 1 0 2026 18 25 891 chain 44323 chr9 138394717 + 100818725 100819231 L1PA4 6152 + 5607 6138 31937 371 1 26 134 chain 32654 chr9 138394717 + 100843871 100844329 MLT2A1 477 + 0 476 39803 102 13 5 61 5 2 90 7 6 119 3 33 58 chain 292895 chr9 138394717 + 100869583 100872933 L1PA5 6144 + 2761 6143 7045 481 1 0 33 0 37 1117 9 7 858 2 0 24 6 6 819 chain 167529 chr9 138394717 + 100890774 100893230 MER57-int 2662 + 284 2659 11241 29 2 0 134 9 13 201 0 5 34 0 8 46 14 2 16 0 2 43 3 0 42 10 9 224 8 0 45 0 3 116 0 1 90 6 3 38 5 11 5 2 0 106 2 1 330 17 0 64 8 4 47 1 0 13 0 4 51 0 1 302 11 10 87 17 12 58 0 1 4 3 0 5 64 23 16 1 0 7 11 9 15 24 18 33 3 0 34 chain 2965 chr9 138394717 + 100916023 100916054 LTR32 486 + 43 74 100227 31 chain 40359 chr9 138394717 + 100916766 100917301 MLT2A2 560 + 0 560 34408 169 17 33 320 7 16 22 chain 43047 chr9 138394717 + 100922939 100923518 L1PREC2 3366 + 1679 2265 32747 56 0 1 268 4 5 27 7 4 40 0 3 101 0 1 54 7 11 15 chain 6307 chr9 138394717 + 100945721 100945817 Tigger1 2417 + 59 151 79975 47 11 6 25 0 1 13 chain 26509 chr9 138394717 + 100963182 100963504 L1PA7 6471 + 6134 6466 46972 263 1 11 58 chain 23027 chr9 138394717 + 100982265 100982598 THE1B 368 + 0 341 52319 44 5 20 101 8 7 30 1 0 20 4 0 65 2 1 53 chain 178061 chr9 138394717 + 100985103 100987008 L1HS 6032 + 4127 6032 10674 1905 chain 4332 chr9 138394717 + 101022917 101023015 MER58A 224 + 68 183 89282 16 37 54 45 chain 23415 chr9 138394717 + 101043933 101044232 L1PB1 5432 + 4387 4673 51734 239 13 0 47 chain 43289 chr9 138394717 + 101116214 101117100 MER41-int 2638 + 2059 2634 32585 28 1 0 18 0 1 218 0 9 47 315 0 169 9 4 81 chain 82952 chr9 138394717 + 101143445 101144414 L1PA6 6164 + 5171 6156 21028 144 1 0 431 0 14 248 0 1 8 0 2 137 chain 138389 chr9 138394717 + 101178020 101179711 HERVL-int 5654 + 3932 5654 13228 12 0 4 104 6 4 218 0 19 785 5 2 353 0 7 61 0 6 147 chain 30283 chr9 138394717 + 101179711 101180089 MLT2A1 477 + 0 383 41780 130 0 1 37 0 4 211 chain 9772 chr9 138394717 + 101224916 101225104 MER6A 605 + 345 538 70881 13 0 7 60 47 45 68 chain 56980 chr9 138394717 + 101262493 101263167 L1PA7 6471 + 5799 6470 27271 660 2 0 7 1 0 4 chain 27835 chr9 138394717 + 101267913 101268235 L1PA5 6144 + 5793 6117 45130 194 2 4 126 chain 556567 chr9 138394717 + 101290800 101296956 L1PA3long 6157 + 4 6157 325 301 4 1 1518 13 0 383 0 2 1062 0 2 673 0 1 153 7 8 1202 0 4 513 0 3 327 chain 24708 chr9 138394717 + 101316157 101316459 AluY 311 + 3 305 49714 120 1 0 9 1 2 171 chain 2854 chr9 138394717 + 101320100 101320145 MamRep4096 390 + 165 211 101225 17 0 4 13 3 0 12 chain 3815 chr9 138394717 + 101350420 101350470 MER58D 378 + 328 378 92747 50 chain 114841 chr9 138394717 + 101451922 101453442 THE1B-int 1605 + 45 1605 16405 66 0 1 320 19 44 129 0 1 404 0 13 11 25 14 16 0 1 292 1 10 232 0 1 5 chain 4487 chr9 138394717 + 101584465 101584570 MERX 374 + 161 231 88405 44 40 5 21 chain 22242 chr9 138394717 + 101616660 101616904 L1PA2 6032 + 5788 6032 53491 244 chain 122771 chr9 138394717 + 101721427 101722965 THE1A-int 1579 + 0 1559 15065 362 1 0 140 0 1 154 0 18 32 0 1 115 1 0 171 0 2 369 0 1 193 chain 122796 chr9 138394717 + 101806932 101808516 THE1A-int 1579 + 0 1579 15061 15 13 10 536 1 0 160 0 9 7 15 6 342 1 0 288 0 1 4 1 0 201 chain 28566 chr9 138394717 + 101809352 101809719 MLT2A1 477 + 0 374 44008 46 0 2 90 0 1 23 8 12 200 chain 501875 chr9 138394717 + 101815225 101821978 L1PA7 6471 + 3 6465 3062 225 59 60 69 13 14 39 4 7 366 4 6 26 1 0 73 7 5 275 4 8 152 6 7 93 3 9 21 13 14 490 0 1 590 17 18 63 19 4 212 317 0 72 0 1 529 0 3 89 0 4 17 0 1 195 0 3 63 4 5 683 4 6 302 0 8 124 1 0 666 1 0 18 0 1 655 27 28 142 chain 168673 chr9 138394717 + 101830012 101831895 L1PA3long 6157 + 4275 6157 11170 433 0 1 679 2 0 659 0 3 5 8 5 97 chain 4604 chr9 138394717 + 101835599 101835734 MER44D 709 + 570 701 87781 34 4 0 13 59 59 25 chain 236015 chr9 138394717 + 101836783 101839887 L1PA8 5853 + 2719 5791 8571 150 1 2 16 0 1 41 0 4 14 8 12 6 0 2 12 0 9 229 52 5 172 2 1 248 0 1 726 1 0 151 1 2 108 1 0 377 3 1 75 0 2 7 0 1 349 0 1 120 1 0 46 2 0 72 13 11 44 7 6 16 1 0 32 chain 69194 chr9 138394717 + 101852506 101853444 L1PA8A 6298 + 5328 6289 24180 43 1 0 123 7 4 64 6 8 254 0 6 186 8 14 52 0 1 127 3 4 21 10 20 7 0 1 26 chain 56477 chr9 138394717 + 101876861 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138394717 + 102317291 102320603 L1PA3long 6157 + 2838 6157 6918 395 1 0 684 0 1 1221 0 1 396 1 0 287 0 1 59 0 2 19 0 4 249 chain 506506 chr9 138394717 + 102337207 102343081 L1PA5 6144 + 0 5873 2912 643 26 4 385 1 4 334 1 0 63 1 0 62 12 10 329 0 4 541 0 4 137 0 3 511 1 8 678 1 0 1372 0 1 198 0 4 578 chain 87711 chr9 138394717 + 102349488 102350558 L1PA7 6471 + 5396 6467 20092 196 1 2 27 1 0 89 1 0 53 0 1 48 0 1 30 0 2 601 0 1 7 3 0 13 chain 65248 chr9 138394717 + 102355609 102356643 MER11A 1151 + 7 1151 25117 56 0 99 37 2 0 29 90 0 66 0 11 21 0 2 150 0 4 49 0 13 65 6 5 68 6 9 12 1 2 37 1 5 70 0 1 16 1 59 101 12 13 58 1 7 15 1 0 59 0 1 4 chain 36287 chr9 138394717 + 102367916 102368387 MER9a3 513 + 39 513 37220 72 0 1 144 5 4 175 0 1 18 0 2 57 chain 6045 chr9 138394717 + 102383408 102383473 L1P2 5180 + 1605 1670 80905 65 chain 47512 chr9 138394717 + 102385242 102385779 L1PA3long 6157 + 5619 6156 30476 537 chain 9538 chr9 138394717 + 102392432 102392548 L1PB1 5432 + 4987 5103 71396 116 chain 23836 chr9 138394717 + 102394127 102394414 L1PA5 6144 + 5858 6142 51044 277 3 0 7 chain 35587 chr9 138394717 + 102397549 102398014 MER75 514 + 38 503 37667 61 12 12 301 1 0 86 0 1 4 chain 16144 chr9 138394717 + 102406051 102406247 MLT2A1 477 + 0 193 60821 168 5 2 23 chain 67501 chr9 138394717 + 102406930 102407690 L1PA4 6152 + 5383 6143 24568 760 chain 23219 chr9 138394717 + 102457644 102457892 L1PA2 6032 + 5773 6021 52054 248 chain 14007 chr9 138394717 + 102487502 102487665 L1PA5 6144 + 5643 5805 63587 137 1 0 25 chain 27864 chr9 138394717 + 102487665 102487993 L1PA5 6144 + 5806 6135 45090 175 0 5 6 4 0 143 chain 7405 chr9 138394717 + 102488370 102488453 L1PA5 6144 + 6052 6135 76381 83 chain 40407 chr9 138394717 + 102535996 102536443 L1PA2 6032 + 5584 6032 34378 430 0 1 17 chain 8378 chr9 138394717 + 102572690 102573194 L1MA6 2487 + 1938 2379 73952 51 82 79 52 286 226 33 chain 10151 chr9 138394717 + 102614364 102614664 L1PB1 5432 + 5114 5384 70099 21 1 0 7 5 4 10 2 0 3 2 0 9 2 0 52 2 1 10 16 11 18 63 51 16 2 0 5 1 0 16 2 0 31 0 1 4 chain 216499 chr9 138394717 + 102694610 102697079 L1PA4 6152 + 3688 6151 9133 6 0 1 420 9 0 513 0 1 1189 0 1 332 chain 74989 chr9 138394717 + 102712548 102713581 MER11A 1151 + 0 1136 22845 79 0 8 103 6 7 33 1 0 64 0 11 227 0 13 128 15 18 12 6 7 33 0 4 87 1 59 171 0 6 15 7 6 45 chain 6693 chr9 138394717 + 102760370 102760568 LTR12D 1347 + 643 752 78662 50 102 13 46 chain 45806 chr9 138394717 + 102791830 102792327 L1PA3long 6157 + 4216 4713 31163 497 chain 55983 chr9 138394717 + 102796194 102796897 MER11D 897 + 169 897 27567 403 0 23 121 0 2 179 chain 41803 chr9 138394717 + 102801831 102802391 L1PA7 6471 + 5807 6470 33486 170 0 102 53 1 2 164 10 14 5 3 0 135 0 1 8 2 0 9 chain 43844 chr9 138394717 + 102817611 102818218 L1P3 4156 + 3534 4136 32220 12 0 4 48 2 1 234 4 1 163 7 5 105 2 0 7 2 1 21 chain 39453 chr9 138394717 + 102847625 102848071 L1PA5 6144 + 5698 6144 35040 446 chain 22503 chr9 138394717 + 102853560 102853821 L1PA7 6471 + 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103116170 103116206 L1MDa 1598 + 438 474 96415 36 chain 149298 chr9 138394717 + 103154821 103156569 L1P1 4361 + 1424 3100 12401 918 0 1 79 0 3 32 76 0 643 chain 63155 chr9 138394717 + 103162143 103162843 L1PA2 6032 + 5326 6030 25588 466 1 5 233 chain 103384 chr9 138394717 + 103186732 103188109 LTR12C 1709 + 0 1709 17902 73 0 1 128 1 2 69 15 25 116 8 6 21 0 12 11 0 1 101 12 13 154 0 1 60 14 330 100 11 4 319 12 11 69 1 0 82 chain 20333 chr9 138394717 + 103189438 103189821 L1PB1 5432 + 5002 5422 55969 101 1 2 5 0 58 52 2 1 16 1 0 44 1 0 15 66 50 24 1 0 22 2 1 11 1 0 18 chain 103330 chr9 138394717 + 103212873 103214038 L1PA4 6152 + 4980 6143 17911 398 1 0 227 1 0 538 chain 356860 chr9 138394717 + 103237485 103241471 L1HS 6032 + 1 3987 5838 248 8 7 451 0 1 3279 chain 9114 chr9 138394717 + 103241483 103241587 L1PA2 6032 + 5926 6030 72314 104 chain 26722 chr9 138394717 + 103262872 103263264 MLT2A1 477 + 0 415 46655 139 3 0 5 21 29 42 0 38 132 8 0 6 12 0 24 chain 95497 chr9 138394717 + 103285840 103286900 L1PA4 6152 + 4907 5968 18843 566 1 2 493 chain 3777 chr9 138394717 + 103297043 103297089 MLT1D 503 + 126 172 93012 46 chain 23659 chr9 138394717 + 103312788 103313053 L1PA4 6152 + 4593 4858 51341 265 chain 35545 chr9 138394717 + 103327307 103327691 L1PA3long 6157 + 5773 6157 37688 384 chain 169550 chr9 138394717 + 103356245 103358113 L1PA3long 6157 + 4299 6156 11125 1008 1 0 378 10 0 471 chain 29444 chr9 138394717 + 103370266 103370577 AluYa5 310 + 0 310 42676 132 1 0 178 chain 35380 chr9 138394717 + 103460707 103461211 LTR10D 510 + 6 510 37783 62 9 13 18 2 0 133 13 15 23 3 1 144 3 1 94 chain 13373 chr9 138394717 + 103483377 103483540 THE1D-int 1627 + 25 188 64506 163 chain 66286 chr9 138394717 + 103491175 103491910 L1PA3long 6157 + 4255 4990 24882 735 chain 44138 chr9 138394717 + 103509337 103509940 HSMAR1 1287 + 0 622 32057 28 0 15 73 4 9 235 6 9 9 0 1 185 11 6 52 chain 6611 chr9 138394717 + 103557847 103557990 L1PA13 3608 - 165 279 78942 40 9 7 4 1 0 4 1 0 26 24 0 27 1 0 6 chain 10180 chr9 138394717 + 103634337 103634456 L1PA5 6144 + 6020 6139 70054 119 chain 20356 chr9 138394717 + 103703645 103703976 L1PA17 2846 + 2313 2641 55941 71 2 1 15 0 4 102 6 8 6 7 0 15 1 0 66 6 5 15 0 2 8 1 0 10 chain 17109 chr9 138394717 + 103710480 103710684 L1PA3long 6157 + 5951 6157 59682 189 3 5 12 chain 75732 chr9 138394717 + 103752874 103753707 L1PA3long 6157 + 2762 3596 22647 535 0 1 298 chain 28521 chr9 138394717 + 103754031 103754516 MLT2A1 477 + 0 477 44083 122 4 3 19 5 9 15 5 2 11 0 1 108 3 4 38 8 0 48 58 56 41 chain 31654 chr9 138394717 + 103762909 103763392 LTR2 463 + 0 463 40618 195 58 38 36 2 1 92 12 13 88 chain 7215 chr9 138394717 + 103832411 103832490 L1PA5 6144 + 6053 6132 76895 79 chain 325873 chr9 138394717 + 103860072 103863747 L1PA4 6152 + 1664 5349 6285 1231 0 1 1447 0 8 278 1 0 44 2 0 630 1 5 41 chain 18991 chr9 138394717 + 103891952 103892260 L1PA14 3548 + 3156 3456 57562 8 3 0 57 1 0 19 0 6 86 4 3 6 4 0 39 2 0 13 1 0 5 9 8 9 1 0 41 chain 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104311380 L1PA8A 6298 + 45 6292 3803 13 36 24 4 0 1 11 3 0 21 64 52 6 1 0 10 2 0 17 2 0 4 1 0 13 1 0 8 1 0 6 1 0 8 1 0 14 4 0 8 1 0 42 30 23 77 3 1 18 1 0 6 1 0 4 1 0 38 5 4 136 6 5 211 0 9 84 4 5 168 18 20 16 3 0 9 1 0 44 0 1 17 0 1 18 10 2 83 4 0 141 0 1 178 0 1 39 1 0 260 0 1 16 3 0 560 17 1 464 0 4 393 5 0 88 0 2 35 328 0 58 6 10 4 1 0 306 1 0 8 0 2 514 0 4 303 22 12 106 0 1 4 1 0 332 0 1 51 1 2 286 22 18 582 7 6 81 14 15 45 0 1 22 0 1 26 chain 113116 chr9 138394717 + 104316100 104317433 SVA_A 1864 + 42 1864 16662 61 5 4 296 0 116 147 1 375 823 chain 36372 chr9 138394717 + 104327087 104327595 MER41A 554 + 0 554 37160 37 11 10 12 0 10 69 18 32 270 0 23 91 chain 4265 chr9 138394717 + 104377412 104377461 MADE1 96 + 47 96 89734 49 chain 21978 chr9 138394717 + 104377499 104377767 AluY 311 + 19 299 53868 76 12 23 8 0 1 172 chain 39963 chr9 138394717 + 104379681 104380177 MLT2A2 560 + 17 547 34688 184 0 1 96 7 9 98 0 31 111 chain 203723 chr9 138394717 + 104412865 104415539 MER4-int 2692 + 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52 6 5 11 1 0 7 1 0 37 1 0 10 33 22 12 34 29 17 1 0 22 1 0 12 1 0 14 1 0 4 chain 30422 chr9 138394717 + 104558348 104558757 L1PA8 5853 + 5449 5853 41660 115 1 0 46 2 0 69 10 9 10 1 2 40 2 1 19 1 0 93 chain 75093 chr9 138394717 + 104614784 104615675 L1PA6 6164 + 5266 6160 22821 76 0 2 210 0 3 208 0 1 383 3 0 11 chain 66287 chr9 138394717 + 104622944 104623707 L1PA5 6144 + 5382 6144 24881 243 1 0 443 10 0 8 0 10 58 chain 26273 chr9 138394717 + 104624097 104624441 THE1A 353 + 7 353 47316 98 6 5 145 1 4 94 chain 123509 chr9 138394717 + 104624441 104626008 THE1A-int 1579 + 0 1577 14936 635 2 3 12 0 3 10 15 19 4 0 1 551 1 2 337 chain 4310 chr9 138394717 + 104626012 104626080 THE1A 353 + 2 76 89446 53 4 10 11 chain 7600 chr9 138394717 + 104626088 104626184 THE1A 353 + 85 180 75871 25 1 0 70 chain 14621 chr9 138394717 + 104626185 104626356 THE1A 353 + 182 353 62775 171 chain 62567 chr9 138394717 + 104640587 104641416 L1PA13 3608 + 2042 2929 25737 49 4 5 130 0 4 10 2 1 359 12 70 195 4 0 64 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12 30 16 19 19 1 0 90 3 4 73 14 0 141 1 0 7 2 1 30 1 0 4 3 0 7 11 7 12 69 45 16 2 0 11 chain 29278 chr9 138394717 + 104750430 104750816 MER51B 395 + 0 395 42925 61 0 6 122 1 0 40 1 0 102 0 4 26 2 3 31 chain 3180 chr9 138394717 + 104828722 104828764 MIR3 191 + 76 118 98092 42 chain 38076 chr9 138394717 + 104874751 104875163 SVA_C 1631 + 878 1289 36013 140 1 0 271 chain 32876 chr9 138394717 + 104982623 104983425 MER51E 476 + 0 476 39606 41 21 6 253 318 0 48 2 0 23 27 38 6 2 0 61 chain 25092 chr9 138394717 + 105020561 105020890 L1PA16 3655 + 3205 3536 49129 42 1 0 42 3 1 225 0 5 16 chain 13559 chr9 138394717 + 105053738 105053900 LTR26 622 + 458 620 64240 162 chain 12838 chr9 138394717 + 105060569 105060754 LTR26 622 + 434 622 65381 11 0 2 60 14 15 100 chain 44110 chr9 138394717 + 105134306 105134859 MER41A 554 + 0 554 32076 128 0 1 230 7 8 181 1 0 6 chain 13392 chr9 138394717 + 105144057 105144236 Tigger3a 397 + 139 311 64484 161 7 0 11 chain 8316 chr9 138394717 + 105144867 105145096 L1MB3 1562 + 1290 1492 74118 62 11 10 20 87 62 39 1 0 9 chain 9288 chr9 138394717 + 105340222 105340357 L1MB3 1562 + 1269 1415 71931 82 1 0 13 7 19 32 chain 22668 chr9 138394717 + 105371453 105371741 AluY 311 + 8 305 52868 40 3 0 5 5 4 75 0 1 5 0 12 155 chain 299876 chr9 138394717 + 105515391 105519733 L1P2 5180 + 4 4078 6834 146 1 0 75 277 98 28 49 19 76 19 0 59 149 68 166 25 4 43 3 18 135 0 19 7 1 2 4 1 0 73 0 1 4 1 0 511 0 1 151 0 14 282 7 8 1216 13 17 146 0 4 296 0 3 89 0 1 229 0 1 60 chain 158481 chr9 138394717 + 105527722 105529674 L1PA7 6471 + 4386 6365 11840 340 0 5 248 12 20 254 0 2 359 0 3 55 22 31 168 4 0 106 1 0 63 0 1 153 0 1 101 1 2 14 0 2 51 chain 522931 chr9 138394717 + 105563175 105569120 L1PA5 6144 + 3 5965 2138 433 1 0 408 0 3 124 13 14 2357 0 5 538 2 0 450 2 9 953 0 4 664 chain 4637 chr9 138394717 + 105571805 105572023 Tigger4a 237 + 1 236 87618 14 0 32 13 0 104 12 6 0 4 120 0 8 0 7 41 chain 3644 chr9 138394717 + 105618294 105618334 MADE1 96 + 3 43 94063 40 chain 27426 chr9 138394717 + 105629716 105630023 L1PA5 6144 + 5657 5964 45666 307 chain 15543 chr9 138394717 + 105630031 105630211 L1PA5 6144 + 5964 6144 61595 180 chain 87707 chr9 138394717 + 105631471 105632428 L1PA2 6032 + 5072 6028 20095 940 1 0 16 chain 14226 chr9 138394717 + 105680373 105680648 MER39B 650 + 0 222 63299 130 90 37 55 chain 28307 chr9 138394717 + 105685743 105686099 L1PA8 5853 + 5505 5853 44399 59 1 0 45 2 0 70 1 0 31 2 0 30 2 1 18 2 1 93 chain 6699 chr9 138394717 + 105713948 105714161 MER52D 1964 + 1103 1205 78644 47 57 9 33 63 0 13 chain 153183 chr9 138394717 + 105763404 105765097 L1PA3long 6157 + 3316 5011 12165 152 0 1 1222 0 1 319 chain 3331 chr9 138394717 + 105885571 105885640 LTR16A 446 + 280 355 96754 13 18 23 33 0 1 5 chain 76532 chr9 138394717 + 105933022 105934046 MER11A 1151 + 0 1151 22432 55 0 99 22 8 0 54 0 4 58 8 4 147 0 1 94 0 1 145 5 6 141 21 52 37 0 1 59 7 8 163 chain 3653 chr9 138394717 + 106013638 106013678 MER53 195 + 1 41 93985 40 chain 74208 chr9 138394717 + 106029743 106030817 MER11A 1151 + 0 1146 23030 55 0 99 76 0 4 4 0 1 55 4 0 32 0 2 73 2 0 27 15 16 94 0 1 143 5 8 120 0 26 26 43 0 24 24 6 28 0 1 60 6 7 158 chain 41048 chr9 138394717 + 106054076 106054553 L1PA7 6471 + 5705 6182 33935 477 chain 15128 chr9 138394717 + 106090060 106090257 L1PA7 6471 + 2483 2678 62128 50 7 5 140 chain 56738 chr9 138394717 + 106093112 106094155 MER11C 1089 + 0 1089 27342 259 0 3 99 0 5 94 18 17 22 142 134 33 122 169 54 0 1 77 0 1 106 4 2 13 chain 33095 chr9 138394717 + 106103425 106103863 MLT2A1 477 + 8 477 39443 161 4 1 215 4 0 9 2 40 43 chain 42713 chr9 138394717 + 106109509 106110047 MLT2A2 560 + 15 560 32940 311 1 0 17 0 1 10 6 2 50 0 11 143 chain 17939 chr9 138394717 + 106118161 106118502 L1PB4 2604 + 2187 2553 58711 81 13 33 78 74 77 7 0 1 17 0 2 8 1 0 62 chain 93163 chr9 138394717 + 106149189 106154028 L1PA5 6144 + 3573 6141 19162 475 0 1 384 3680 1408 300 chain 64573 chr9 138394717 + 106168738 106169449 L1PA3long 6157 + 2854 3565 25297 711 chain 30964 chr9 138394717 + 106212371 106212714 L1P1 4361 + 3987 4328 41156 164 1 0 154 1 0 23 chain 56616 chr9 138394717 + 106319698 106320309 L1PA2 6032 + 5421 6031 27382 349 1 0 261 chain 45871 chr9 138394717 + 106407586 106408082 L1PA3long 6157 + 5661 6157 31118 496 chain 47358 chr9 138394717 + 106515774 106516344 L1PA7 6471 + 5179 5749 30520 192 1 3 247 0 3 29 6 2 28 1 0 66 chain 4059 chr9 138394717 + 106525447 106525507 L1PB3 3668 + 3508 3566 91018 20 3 1 37 chain 452071 chr9 138394717 + 106565080 106571552 L1PA8A 6298 + 78 6290 4337 5 0 2 5 0 2 8 3 0 19 25 16 12 2 1 9 2 1 11 2 1 6 1 0 13 2 0 12 86 130 77 5 12 11 6 4 71 6 5 288 11 7 32 0 1 33 0 1 227 1 5 31 2 0 86 0 1 7 9 6 104 0 3 27 7 5 41 0 1 299 1 2 245 0 1 73 0 1 282 1 4 17 6 8 39 0 2 85 16 0 35 1 4 50 1 0 155 319 0 31 5 9 480 8 9 102 17 14 41 34 22 61 0 1 195 0 3 17 0 1 477 0 1 70 0 1 102 13 9 138 4 1 168 3 0 147 4 0 70 2 1 43 1 6 273 0 29 38 18 18 75 0 9 91 16 21 247 6 10 92 1 2 21 0 2 266 7 0 33 1 0 124 chain 86746 chr9 138394717 + 106573213 106574154 L1PA3long 6157 + 5005 5959 20263 358 0 6 366 0 7 217 chain 9294 chr9 138394717 + 106574565 106574728 L1MB3 1562 + 935 1108 71919 36 6 17 39 24 23 58 chain 542259 chr9 138394717 + 106604995 106611129 L1PA5 6144 + 0 6144 1194 250 0 3 616 0 1 1324 0 2 960 0 7 513 1 2 2120 4 0 346 chain 7077 chr9 138394717 + 106770493 106770910 MER33 330 + 187 293 77344 35 309 0 27 1 0 31 1 0 13 chain 28796 chr9 138394717 + 106788281 106788688 LTR7 482 + 0 477 43631 54 23 61 109 12 13 29 0 31 180 chain 300195 chr9 138394717 + 106788695 106792594 HERVH-int 3825 + 0 3825 6824 40 5 18 275 1 0 188 15 10 39 2 1 8 2 1 9 14 69 40 2 1 50 0 1 13 0 2 14 0 3 244 0 3 69 0 2 1096 0 1 479 0 1 4 1 0 121 0 35 11 35 0 3 1 0 5 1 2 115 165 0 102 10 29 111 0 1 609 chain 8390 chr9 138394717 + 106803666 106803782 L1MA5A 2387 + 2043 2157 73924 26 1 0 38 1 0 50 chain 518726 chr9 138394717 + 106809187 106815344 L1PA6 6164 + 0 6161 2324 467 1 0 306 0 18 97 0 1 450 7 8 1622 0 5 172 1 0 800 3 0 5 0 3 30 0 1 84 7 0 430 0 2 288 1 2 106 0 1 245 5 6 556 0 2 285 25 5 164 chain 188293 chr9 138394717 + 106822632 106824859 L1PA6 6164 + 3944 6156 10195 397 0 1 50 0 1 380 22 0 256 1 0 107 0 1 175 0 4 286 0 1 13 3 0 187 0 2 294 1 2 55 chain 5160 chr9 138394717 + 106997764 106998076 MER58B 340 + 1 329 84863 18 135 152 40 73 74 11 1 0 7 1 0 26 chain 24475 chr9 138394717 + 107031615 107031992 THE1C 375 + 0 375 50071 58 1 0 4 28 30 82 27 24 177 chain 25776 chr9 138394717 + 107031992 107032326 THE1C-int 1605 + 0 344 48061 16 10 11 80 0 3 219 0 6 9 chain 13695 chr9 138394717 + 107159177 107159367 THE1A 353 + 10 202 64021 70 8 10 6 0 1 13 1 0 92 chain 57645 chr9 138394717 + 107159375 107160077 THE1A-int 1579 + 871 1574 27072 388 0 1 314 chain 28222 chr9 138394717 + 107160082 107160435 THE1A 353 + 0 351 44530 110 1 0 92 1 0 149 chain 6856 chr9 138394717 + 107194388 107194689 LTR82B 718 + 0 230 78123 40 99 50 28 85 63 49 chain 22903 chr9 138394717 + 107198404 107198733 THE1C 375 + 0 375 52508 108 0 50 21 0 4 7 34 27 133 1 0 25 chain 31990 chr9 138394717 + 107209835 107210387 L1PB1 5432 + 4902 5425 40353 112 0 2 87 3 2 9 1 0 20 1 0 12 1 0 10 7 3 8 2 0 53 2 1 16 1 0 43 1 0 16 29 15 4 0 1 11 2 0 5 9 8 6 2 0 24 1 0 19 3 6 9 1 0 16 1 0 5 chain 148698 chr9 138394717 + 107271174 107273086 SVA_D 2077 + 238 2060 12441 304 0 80 101 0 3 35 3 0 142 16 14 27 21 10 76 1 0 6 35 10 6 1 0 151 99 0 175 0 12 11 41 0 44 1 0 4 1 0 611 chain 2523 chr9 138394717 + 107271906 107271941 SVA_D 2077 + 1137 1172 33860 35 chain 5772 chr9 138394717 + 107272122 107272198 SVA_D 2077 + 912 976 38804 35 12 0 29 chain 3114 chr9 138394717 + 107272384 107272425 SVA_D 2077 + 1135 1176 38804 41 chain 14011 chr9 138394717 + 107278292 107278549 Tigger3b 1229 + 302 570 63577 19 12 13 89 30 31 43 0 8 20 1 7 15 5 0 23 chain 22662 chr9 138394717 + 107287581 107287858 AluSq2 311 + 29 308 52881 103 0 2 174 chain 6917 chr9 138394717 + 107413611 107413695 MLT1E1 597 + 155 240 77893 19 0 1 65 chain 3935 chr9 138394717 + 107417800 107417998 L1MB7 1623 + 1303 1488 91860 19 2 1 14 32 104 13 84 0 34 chain 25340 chr9 138394717 + 107532690 107532960 AluYg6 310 + 31 301 48729 270 chain 30081 chr9 138394717 + 107754031 107754409 THE1C 375 + 0 374 41974 125 3 0 225 1 0 24 chain 165817 chr9 138394717 + 107775393 107778298 SVA_F 1814 + 9 1814 11348 872 1 0 55 0 1 10 0 15 131 1116 0 34 0 1 686 chain 8365 chr9 138394717 + 107776503 107776690 SVA_F 1814 + 1007 1194 50079 187 chain 6429 chr9 138394717 + 107776690 107776761 SVA_F 1814 + 855 925 79572 43 1 0 27 chain 10413 chr9 138394717 + 107776799 107776916 SVA_F 1814 + 1076 1191 69587 101 1 0 10 1 0 4 chain 4128 chr9 138394717 + 107776916 107776962 SVA_F 1814 + 966 1011 88408 35 1 0 10 chain 7117 chr9 138394717 + 107776963 107777041 SVA_F 1814 + 1011 1089 48984 78 chain 31523 chr9 138394717 + 107777041 107777578 SVA_F 1814 + 898 1269 40479 50 0 15 38 1 0 10 1 0 166 178 0 10 1 0 82 chain 15108 chr9 138394717 + 107777320 107777484 SVA_F 1814 + 1012 1177 62144 115 0 1 49 chain 5912 chr9 138394717 + 107783545 107783636 Charlie1a 1436 + 1310 1408 81439 35 4 11 52 chain 19142 chr9 138394717 + 107808486 107808771 L1PA8 5853 + 5574 5853 57407 34 2 0 67 5 4 13 10 9 37 6 5 17 1 0 93 chain 97533 chr9 138394717 + 107817611 107818993 LTR12C 1709 + 0 1709 18581 464 3 0 5 29 23 50 4 5 103 0 278 184 1 0 5 3 1 90 3 20 10 75 16 142 0 102 91 4 5 28 4 3 84 chain 2671 chr9 138394717 + 107883369 107883423 MER5A 189 + 81 133 102597 26 14 12 14 chain 4177 chr9 138394717 + 108033433 108033501 MER3 215 + 125 205 90277 23 6 18 39 chain 60289 chr9 138394717 + 108069018 108069691 L1PA4 6152 + 3983 4660 26300 368 0 4 305 chain 40528 chr9 138394717 + 108122091 108122695 MER51A 677 + 0 661 34286 106 1 0 4 0 1 25 1 0 34 33 97 54 7 11 200 4 2 52 16 8 67 chain 270800 chr9 138394717 + 108200434 108204369 L1MA1 4479 + 221 4183 7690 6 1 0 52 2 0 81 6 7 50 0 4 57 28 24 140 7 11 45 4 8 110 0 5 60 11 13 28 1 0 138 1 2 41 0 6 575 0 1 67 1 0 4 0 1 59 0 4 227 0 1 40 12 32 6 0 2 48 4 6 201 9 19 182 36 44 42 1 0 95 11 10 29 1 0 62 1 0 82 1 2 8 1 0 27 3 1 155 18 16 94 1 0 12 3 0 53 2 0 4 0 1 68 3 0 16 1 0 108 1 0 226 2 0 16 1 0 71 1 0 20 2 0 6 2 1 6 1 0 88 9 5 21 0 8 93 4 3 30 2 0 35 20 14 14 5 0 2 4 0 11 chain 392223 chr9 138394717 + 108228630 108234674 L1PB1 5432 + 77 5424 5284 98 45 49 23 1 0 259 0 1 63 0 1 35 3 7 351 7 8 187 0 4 227 1 0 5 1 0 7 15 0 187 7 13 323 0 1 465 17 4 20 320 0 28 18 8 41 1 0 424 0 1 112 0 1 3 6 0 70 307 0 476 1 0 4 0 1 17 1 2 11 0 1 4 3 2 73 0 1 33 1 4 218 1 3 498 0 1 74 0 4 102 21 17 33 0 1 129 8 7 108 26 1 77 5 4 94 2 7 4 1 0 20 1 0 15 14 9 11 3 1 50 2 1 16 1 0 44 1 0 20 19 7 19 3 1 4 1 0 14 2 0 24 1 0 17 9 8 9 1 0 16 1 0 4 chain 19592 chr9 138394717 + 108267009 108267258 THE1A-int 1579 + 1308 1563 56910 70 0 1 106 7 12 66 chain 48948 chr9 138394717 + 108328349 108329072 L1MA1 4479 + 2633 3334 29968 35 1 0 103 3 1 32 1 0 62 1 0 41 0 1 50 1 0 27 3 1 172 1 0 17 4 0 72 21 16 53 5 0 18 chain 27325 chr9 138394717 + 108364999 108365295 AluYd8 298 + 0 296 45794 296 chain 28828 chr9 138394717 + 108385696 108386001 AluYk11 308 + 0 305 43586 305 chain 130325 chr9 138394717 + 108393323 108394878 LTR12C 1709 + 0 1709 13999 282 13 5 286 5 6 120 0 159 253 1 0 6 2 0 107 0 4 223 2 3 255 chain 6928 chr9 138394717 + 108422533 108422668 L1MC1 2226 + 1917 2047 77855 42 38 33 55 chain 66726 chr9 138394717 + 108446668 108447570 L1PA5 6144 + 4513 5376 24765 68 37 0 47 3 2 645 1 0 101 chain 31770 chr9 138394717 + 108451799 108452151 L1PA2 6032 + 5676 6030 40519 124 0 2 228 chain 284641 chr9 138394717 + 108497786 108501091 L1P1 4361 + 1 3296 7293 642 1 0 200 1 0 591 1 0 778 8 8 189 9 0 745 0 2 140 chain 555020 chr9 138394717 + 108501091 108507115 L1PA2 6032 + 0 6028 409 501 1 0 2800 0 1 1069 0 4 1653 chain 215943 chr9 138394717 + 108507115 108509566 L1PA4 6152 + 3276 5741 9144 4 0 3 280 0 1 26 0 1 348 7 8 400 0 4 952 1 5 433 chain 107079 chr9 138394717 + 108529963 108531317 LTR12C 1709 + 0 1709 17424 297 0 1 166 0 2 96 31 55 33 0 278 143 0 47 97 9 13 392 6 5 84 chain 71829 chr9 138394717 + 108594612 108595572 LTR5_Hs 974 + 0 974 23584 115 5 13 161 0 1 171 6 7 174 2 0 5 8 9 163 8 15 19 20 18 103 chain 2817 chr9 138394717 + 108622548 108622772 Tigger13a 716 + 453 689 101544 25 98 104 19 64 70 18 chain 17818 chr9 138394717 + 108629190 108629534 THE1B 368 + 0 353 58864 15 2 0 11 37 44 99 2 0 5 1 2 14 13 19 4 0 1 14 25 23 102 chain 119643 chr9 138394717 + 108629549 108631136 THE1B-int 1605 + 0 1597 15584 402 0 1 27 37 20 25 4 0 180 26 0 14 8 48 110 0 8 398 0 1 53 0 7 303 chain 24418 chr9 138394717 + 108658539 108658903 MSTA 426 + 0 407 50138 51 13 9 50 0 21 66 20 46 164 chain 12156 chr9 138394717 + 108694709 108694901 L1PA8 5853 + 5664 5853 66557 14 19 17 21 0 1 23 2 1 18 2 1 93 chain 64885 chr9 138394717 + 108712687 108713479 L1P3 4156 + 940 1757 25219 63 0 24 180 0 4 183 0 3 99 7 0 211 0 1 49 chain 462040 chr9 138394717 + 108713488 108719571 L1PA7 6471 + 6 6449 4078 195 11 10 21 278 504 5 0 2 30 24 99 152 20 41 118 0 1 145 29 28 4 0 1 394 1 0 411 0 1 332 0 6 21 0 5 176 1 5 389 0 2 210 0 1 7 1 0 68 1 0 4 0 1 89 3 2 11 1 0 26 1 0 46 0 1 42 1 0 201 0 4 12 2 0 42 3 0 331 1 0 4 0 1 819 1 0 307 1 0 17 0 13 110 0 5 136 0 3 311 0 1 270 0 4 104 2 1 141 chain 63629 chr9 138394717 + 108731232 108732152 L1MA3 4352 + 37 965 25495 119 1 0 19 12 7 39 0 1 65 0 4 68 5 3 63 0 3 42 2 1 22 0 4 110 6 8 133 0 4 112 2 0 11 1 0 47 5 7 36 chain 115806 chr9 138394717 + 108733585 108734861 L1PA3long 6157 + 4881 6157 16274 1276 chain 9118 chr9 138394717 + 108737657 108737808 L1MA3 4352 + 4186 4332 72305 22 0 1 48 3 1 24 1 0 5 2 1 29 1 0 11 1 0 4 chain 37566 chr9 138394717 + 108766857 108767345 MER1A 529 + 0 490 36355 458 10 13 8 1 0 11 chain 29276 chr9 138394717 + 108804646 108805070 L1PA8 5853 + 5436 5852 42927 85 6 8 35 1 0 10 8 1 12 0 3 18 2 0 71 2 1 60 2 1 19 2 1 91 chain 3284 chr9 138394717 + 108815061 108815096 MADE2 80 + 4 39 97152 35 chain 108707 chr9 138394717 + 108818003 108820046 L1PA15 4387 + 2585 4328 17216 145 0 6 92 434 134 29 1 0 168 2 10 10 11 0 185 7 10 190 13 12 237 0 2 57 15 13 47 1 0 172 1 0 15 9 15 15 11 13 6 2 0 17 1 0 18 24 20 30 19 18 43 3 1 13 chain 62406 chr9 138394717 + 108827707 108828595 L1PB1 5432 + 4184 5083 25774 24 0 2 33 1 2 121 15 14 48 0 1 6 1 0 94 0 6 64 6 10 98 1 0 7 6 5 82 6 5 92 0 1 130 0 1 53 chain 25388 chr9 138394717 + 108856976 108857284 AluSg7 307 + 0 306 48640 30 3 0 101 0 1 174 chain 46500 chr9 138394717 + 109072071 109072632 LTR14 556 + 0 556 30844 351 1 0 103 0 2 26 6 0 74 chain 10017 chr9 138394717 + 109103439 109103597 L1MA2 4263 + 3965 4114 70386 93 19 11 36 1 0 9 chain 3882 chr9 138394717 + 109408734 109408787 L1PA6 6164 + 6106 6162 92273 39 0 5 6 2 0 6 chain 2661 chr9 138394717 + 109460134 109460198 L2a 937 + 176 238 102655 27 21 19 16 chain 25272 chr9 138394717 + 109486696 109487069 THE1C 375 + 0 375 48834 35 5 7 83 13 14 169 7 7 35 1 0 25 chain 118942 chr9 138394717 + 109572339 109574053 L1PA15 4387 + 2696 4366 15714 216 10 0 12 18 17 91 0 4 131 2 1 220 9 0 8 0 10 29 0 1 101 0 2 162 10 0 8 1 3 100 2 0 16 3 0 62 2 0 43 1 0 60 1 0 111 2 1 25 1 0 55 1 0 22 8 0 10 1 0 50 7 4 40 6 4 10 9 4 27 1 0 10 chain 87016 chr9 138394717 + 109631221 109632276 MER11C 1089 + 0 1073 20230 251 0 1 65 0 4 367 0 4 45 0 1 83 16 24 81 2 0 5 0 2 140 chain 15007 chr9 138394717 + 109713670 109713975 L1MC2 1988 + 1595 1918 62262 75 19 22 70 11 10 38 60 76 32 chain 22201 chr9 138394717 + 109761899 109762149 L1PA8 5853 + 5056 5306 53552 250 chain 6507 chr9 138394717 + 109802326 109802408 MER45A 178 + 91 173 79323 82 chain 114576 chr9 138394717 + 109808104 109809699 THE1C-int 1605 + 0 1598 16465 115 1 55 117 0 17 100 6 5 31 90 16 115 2 1 92 1 0 86 0 9 546 7 8 180 1 0 105 chain 67896 chr9 138394717 + 109825602 109826363 L1PA5 6144 + 5372 6132 24475 616 1 0 144 chain 540317 chr9 138394717 + 109835400 109841526 L1PA5 6144 + 0 6144 1322 1728 0 1 838 0 1 107 0 1 607 1 2 137 12 4 808 0 14 94 0 8 411 1 0 261 1 0 516 0 1 198 0 1 406 chain 25579 chr9 138394717 + 109842867 109843160 AluSp 311 + 9 302 48351 293 chain 19065 chr9 138394717 + 109954467 109954671 L1PA2 6032 + 5828 6032 57476 204 chain 3562 chr9 138394717 + 110013952 110014094 MER58A 224 + 46 190 94735 31 89 91 22 chain 6539 chr9 138394717 + 110198522 110198595 tRNA-Arg-CGA_ 73 + 0 73 79204 73 chain 24188 chr9 138394717 + 110224128 110224492 THE1B 368 + 0 368 50512 169 1 0 29 0 2 14 28 30 63 11 12 49 chain 21799 chr9 138394717 + 110224942 110225332 THE1D 372 + 0 372 54101 44 29 0 17 4 14 23 16 12 56 32 33 33 0 4 136 chain 34738 chr9 138394717 + 110307571 110308009 MER4A1 472 + 10 472 38198 53 0 1 183 0 21 24 0 2 178 chain 99467 chr9 138394717 + 110312026 110313985 MER4-int 2692 + 1356 2692 18357 63 0 1 57 4 9 131 1 2 75 0 4 196 1 8 27 4 0 90 0 1 107 1 4 110 317 0 19 0 1 13 3 4 9 1 0 126 15 21 7 331 0 251 chain 31044 chr9 138394717 + 110313993 110314403 MER4A1 472 + 0 433 41092 174 0 1 72 7 28 82 0 1 75 chain 12974 chr9 138394717 + 110345137 110345733 Tigger2 2703 + 0 278 65149 113 32 38 7 7 0 15 23 27 27 319 0 43 2 0 8 chain 518655 chr9 138394717 + 110393398 110399233 L1PA4 6152 + 13 5879 2331 129 0 14 424 1 0 11 0 1 311 0 4 27 0 1 1768 0 5 544 0 4 88 0 2 1002 0 2 319 7 8 301 1 0 115 0 1 287 2 0 498 chain 104606 chr9 138394717 + 110412387 110413553 L1PA3long 6157 + 4989 6157 17743 317 2 6 840 2 0 5 chain 567709 chr9 138394717 + 110417102 110423126 L1HS 6032 + 0 6025 24 1752 0 1 4272 chain 27907 chr9 138394717 + 110466476 110466781 AluYa5 310 + 0 302 45024 123 2 0 3 1 0 176 chain 42448 chr9 138394717 + 110496177 110496716 MLT2A2 560 + 0 560 33098 86 0 3 15 0 3 292 3 14 137 0 4 6 chain 24353 chr9 138394717 + 110531320 110531656 THE1C 375 + 3 342 50244 170 14 14 26 7 10 119 chain 78944 chr9 138394717 + 110589268 110590313 MER11C 1089 + 0 1063 21887 246 0 9 62 0 4 65 1 0 146 7 35 7 14 0 4 15 0 13 6 4 81 1 0 12 0 4 7 1 0 18 0 3 17 0 1 123 0 1 38 0 1 72 0 1 89 chain 173787 chr9 138394717 + 110644909 110646906 L1PA5 6144 + 4132 6135 10908 84 8 1 86 2 1 324 1 0 669 0 4 109 0 1 159 0 17 410 7 0 138 chain 66760 chr9 138394717 + 110658948 110659706 L1PA5 6144 + 5381 6140 24756 429 0 1 329 chain 108716 chr9 138394717 + 110666274 110667588 L1PA7 6471 + 3751 5051 17214 85 19 2 170 1 0 294 15 17 327 0 1 198 0 1 205 chain 29911 chr9 138394717 + 110710915 110711265 L1PA5 6144 + 5800 6142 42124 206 4 0 129 4 0 7 chain 9081 chr9 138394717 + 110725087 110725292 L1PB1 5432 + 5144 5326 72376 14 5 1 9 2 0 52 18 16 15 1 0 31 2 1 13 2 0 6 17 6 18 chain 48088 chr9 138394717 + 110758464 110759342 L1PREC2 3366 + 2115 3042 30264 285 8 9 18 6 13 42 0 1 4 0 1 71 7 88 67 2 0 34 9 7 46 7 6 43 1 0 4 3 0 13 70 55 29 2 0 9 66 50 32 chain 567917 chr9 138394717 + 110791097 110797129 L1HS 6032 + 0 6032 17 6032 chain 78404 chr9 138394717 + 110826250 110827218 LTR5_Hs 974 + 0 974 22001 17 0 4 437 1 5 313 7 7 106 1 0 22 1 0 63 chain 3003 chr9 138394717 + 110858343 110858377 MER51D 577 + 424 458 99812 34 chain 24086 chr9 138394717 + 110860649 110861003 THE1C-int 1605 + 0 424 50669 16 1 2 39 1 2 28 0 66 17 3 0 152 5 11 57 4 3 31 chain 24619 chr9 138394717 + 110902263 110902625 THE1C 375 + 0 375 49839 61 7 12 65 13 17 29 1 2 72 1 0 91 1 0 13 0 5 8 chain 5553 chr9 138394717 + 110909391 110909467 LOR1a 498 + 425 498 83019 5 3 0 68 chain 19134 chr9 138394717 + 110923286 110923582 MER47A 366 + 0 296 57414 52 27 25 68 2 3 118 3 4 26 chain 27841 chr9 138394717 + 110956058 110956389 L1PA7 6471 + 6131 6461 45119 184 1 0 146 chain 76281 chr9 138394717 + 110965328 110966604 L1PA8 5853 + 4897 5853 22491 108 1 4 362 1 0 41 2 0 149 2 1 42 10 8 67 1 0 9 1 0 72 315 0 93 chain 71617 chr9 138394717 + 110981752 110982634 L1PA7 6471 + 5580 6468 23634 12 1 6 23 0 3 209 1 0 238 1 0 397 chain 8300 chr9 138394717 + 110991893 110992015 LTR64 526 + 406 521 74157 39 4 0 69 3 0 7 chain 102939 chr9 138394717 + 111080973 111082108 L1PA4 6152 + 3524 4659 17960 1135 chain 69113 chr9 138394717 + 111091246 111092081 HERVL-int 5654 + 0 841 24193 173 1 3 277 0 2 14 0 1 44 0 1 326 chain 5699 chr9 138394717 + 111117335 111117431 MER2 342 + 211 320 82344 7 0 12 60 12 13 17 chain 4643 chr9 138394717 + 111136021 111136076 L1MB7 1623 + 239 294 87570 55 chain 3518 chr9 138394717 + 111138676 111138735 MER2 342 + 111 169 95115 29 9 8 21 chain 59334 chr9 138394717 + 111167752 111168448 L1PA7 6471 + 5774 6467 26551 688 3 0 5 chain 51073 chr9 138394717 + 111189211 111190042 L1MA3 4352 + 3485 4307 29199 103 22 23 5 1 0 111 0 1 166 55 56 143 36 11 8 0 7 51 3 10 37 1 5 38 2 0 22 1 0 6 1 0 19 chain 250926 chr9 138394717 + 111199925 111202676 L1PA3long 6157 + 3396 6149 8202 2585 1 3 165 chain 159991 chr9 138394717 + 111202716 111204916 L1PA11 4918 + 1772 4023 11756 35 0 1 4 1 2 51 1 0 305 15 18 26 1 0 20 1 2 24 0 4 88 7 11 90 2 0 24 23 24 38 20 12 519 7 14 151 0 1 54 0 3 56 0 1 82 2 0 99 9 0 354 27 74 64 chain 70825 chr9 138394717 + 111223727 111224517 L1PA4 6152 + 5362 6152 23800 790 chain 46176 chr9 138394717 + 111225756 111226263 L1PA5 6144 + 5635 6142 30974 507 chain 26461 chr9 138394717 + 111299710 111300062 L1PA8 5853 + 5506 5853 47037 18 0 2 38 1 0 44 2 0 74 10 8 50 2 1 19 1 0 93 chain 45296 chr9 138394717 + 111304019 111304527 L1PA5 6144 + 5635 6143 31421 508 chain 23653 chr9 138394717 + 111309696 111309977 AluSp 311 + 8 289 51347 281 chain 23729 chr9 138394717 + 111315610 111315911 AluY 311 + 2 305 51228 28 1 6 97 6 0 14 3 6 152 chain 43882 chr9 138394717 + 111331950 111332730 L1PB1 5432 + 4661 5404 32203 133 0 8 212 0 2 87 31 11 24 38 30 52 2 1 9 15 6 44 1 0 14 21 0 8 34 49 19 2 1 20 2 1 12 chain 8059 chr9 138394717 + 111333849 111333950 L1MC 810 + 299 400 74727 101 chain 194554 chr9 138394717 + 111334002 111336412 L1P3 4156 + 1 2420 9902 146 0 1 88 27 26 58 1 0 137 1 0 122 0 5 22 0 1 107 5 7 187 1 2 538 10 11 99 2 1 63 0 1 4 5 4 264 0 2 523 chain 28815 chr9 138394717 + 111337855 111338179 LTR17 781 + 0 324 43607 324 chain 345289 chr9 138394717 + 111338196 111342554 L1PA7 6471 + 2413 6470 5978 228 1 0 928 1 9 430 0 1 994 4 0 333 307 0 285 0 3 112 6 0 96 0 1 211 1 0 90 1 3 176 0 1 4 1 2 4 0 1 145 chain 79577 chr9 138394717 + 111511089 111512156 MER11A 1151 + 0 1151 21728 78 1 9 109 5 4 30 1 0 64 0 11 331 1 2 44 20 24 37 0 4 69 0 2 16 1 59 101 5 4 87 1 0 66 chain 8974 chr9 138394717 + 111565255 111565386 MLT1B 390 + 230 362 72618 12 7 5 20 0 1 60 0 2 32 chain 80938 chr9 138394717 + 111567802 111568829 MER11A 1151 + 0 1151 21447 55 0 99 22 8 0 24 1 0 94 4 0 36 1 3 240 0 1 101 1 0 9 5 6 89 0 1 39 6 40 292 chain 75497 chr9 138394717 + 111591783 111592657 MER11D 897 + 0 897 22717 287 1 0 310 0 24 276 chain 163893 chr9 138394717 + 111639967 111642603 SVA_F 1814 + 13 1788 11490 881 692 0 53 0 15 43 182 0 172 1 0 10 1 0 601 chain 6738 chr9 138394717 + 111640852 111640934 SVA_F 1814 + 962 1105 56314 38 0 1 4 1 0 19 6 67 14 chain 30933 chr9 138394717 + 111640934 111641505 SVA_F 1814 + 914 1274 41188 34 229 18 308 chain 17698 chr9 138394717 + 111640971 111641197 SVA_F 1814 + 966 1142 44807 125 50 0 51 chain 2134 chr9 138394717 + 111641120 111641143 SVA_F 1814 + 924 947 90296 23 chain 9568 chr9 138394717 + 111641636 111641817 SVA_F 1814 + 1132 1181 60020 45 132 0 4 chain 5924 chr9 138394717 + 111641709 111641812 SVA_F 1814 + 1025 1128 64294 103 chain 5574 chr9 138394717 + 111790222 111790311 MADE1 96 + 1 96 82913 46 3 11 10 2 0 28 chain 35015 chr9 138394717 + 111808416 111808877 MER4A1 472 + 0 462 38010 30 0 1 320 18 15 5 0 3 88 chain 80707 chr9 138394717 + 111875302 111876269 LTR5_Hs 974 + 0 974 21492 13 0 4 442 0 4 448 1 0 63 chain 26979 chr9 138394717 + 111918651 111918951 AluYd8 298 + 0 296 46298 114 4 0 182 chain 3740 chr9 138394717 + 111940280 111940326 L1MB7 1623 + 1384 1429 93327 38 1 0 7 chain 23292 chr9 138394717 + 111948135 111948423 AluSp 311 + 1 293 51941 38 0 4 178 1 2 50 1 0 20 chain 25651 chr9 138394717 + 112025215 112025620 MSTB 430 + 31 430 48240 31 0 1 59 0 1 73 0 5 6 5 1 13 26 18 92 29 28 71 chain 4832 chr9 138394717 + 112067409 112067466 MLT1K 546 + 486 543 86528 57 chain 3149 chr9 138394717 + 112137807 112137843 U6 107 + 11 47 98367 36 chain 23660 chr9 138394717 + 112151755 112152053 AluSp 311 + 0 298 51338 91 0 3 48 3 0 5 1 4 142 3 0 5 chain 8712 chr9 138394717 + 112169285 112169393 HY1 111 + 0 109 73187 83 0 1 25 chain 3792 chr9 138394717 + 112170655 112170699 MER89 557 + 0 44 92910 44 chain 6171 chr9 138394717 + 112178824 112178924 L1MB3 1562 + 1446 1547 80445 23 1 0 45 7 9 24 chain 9794 chr9 138394717 + 112205713 112205866 MER2 342 + 66 215 70837 13 7 4 32 2 1 99 chain 5071 chr9 138394717 + 112248404 112248488 L1PB1 5432 + 5314 5392 85300 12 3 1 5 1 0 14 2 0 24 1 0 22 chain 7750 chr9 138394717 + 112252257 112252347 5S 121 + 0 90 75489 90 chain 6857 chr9 138394717 + 112274827 112275124 LTR54B 464 + 164 464 78118 33 111 113 36 56 55 21 11 13 29 chain 17770 chr9 138394717 + 112284741 112285052 THE1D-int 1627 + 1310 1622 58931 18 51 50 138 1 0 12 0 1 36 0 1 22 0 1 5 10 9 14 0 1 4 chain 23560 chr9 138394717 + 112340600 112340888 AluSp 311 + 0 294 51491 91 0 3 95 6 9 96 chain 11943 chr9 138394717 + 112350084 112350338 L1PB1 5432 + 5168 5398 66931 52 18 16 45 1 0 15 26 12 18 3 1 4 1 0 15 6 4 20 1 0 22 1 0 6 chain 26014 chr9 138394717 + 112365243 112365611 THE1B 368 + 0 368 47697 15 13 11 11 0 5 130 2 1 17 10 8 170 chain 27329 chr9 138394717 + 112365630 112366008 THE1B-int 1605 + 19 568 45789 50 1 2 187 1 138 27 3 28 18 0 8 91 chain 14490 chr9 138394717 + 112420676 112420964 MER75B 242 + 0 231 62905 31 73 0 77 6 17 5 2 0 76 0 9 11 2 0 5 chain 136534 chr9 138394717 + 112513754 112515904 SVA_F 1814 + 335 1814 13388 552 1 0 11 632 0 49 0 15 67 52 0 158 1 0 627 chain 5023 chr9 138394717 + 112514319 112514380 SVA_F 1814 + 963 1024 55542 61 chain 21810 chr9 138394717 + 112514383 112514950 SVA_F 1814 + 914 1089 40647 34 0 15 74 407 0 52 chain 6506 chr9 138394717 + 112514491 112514570 SVA_F 1814 + 1213 1291 55542 61 1 0 17 chain 4764 chr9 138394717 + 112514597 112514648 SVA_F 1814 + 1091 1142 59702 51 chain 22549 chr9 138394717 + 112514648 112514898 SVA_F 1814 + 966 1213 42402 211 2 0 10 1 0 26 chain 2776 chr9 138394717 + 112515066 112515099 SVA_F 1814 + 1107 1138 89568 21 2 0 10 chain 6463 chr9 138394717 + 112715034 112715112 LTR54 533 + 425 503 79470 78 chain 2869 chr9 138394717 + 112728742 112728774 MLT1D 503 + 124 156 101073 32 chain 19153 chr9 138394717 + 112832574 112832785 L1PA4 6152 + 5939 6150 57396 211 chain 5964 chr9 138394717 + 112852325 112852412 MER2 342 + 164 240 81213 7 11 0 69 chain 253224 chr9 138394717 + 112978880 112981870 L1PA7 6471 + 3430 6465 8153 119 0 4 19 1 9 207 0 1 607 0 5 193 0 9 66 0 8 511 2 1 280 0 5 140 0 1 138 0 3 35 0 1 348 0 2 179 1 0 8 1 0 85 0 4 41 3 0 6 chain 135073 chr9 138394717 + 113029453 113030982 L1PA6 6164 + 4358 5904 13540 10 0 4 275 1 0 180 0 5 70 1 0 612 2 0 228 0 11 80 0 1 70 chain 3554 chr9 138394717 + 113093700 113093744 L1MC1 2226 + 2000 2045 94814 29 0 1 15 chain 44411 chr9 138394717 + 113095433 113096033 LTR43 600 + 0 600 31880 39 21 24 381 2 0 131 2 1 24 chain 93771 chr9 138394717 + 113140532 113141611 MER11C 1089 + 0 1079 19070 567 12 11 129 0 1 371 chain 25154 chr9 138394717 + 113174818 113175091 AluYa5 310 + 38 310 49029 85 1 0 187 chain 2784 chr9 138394717 + 113181348 113181378 MER58A 224 + 49 79 101745 30 chain 20083 chr9 138394717 + 113194175 113194416 L1PA2 6032 + 5778 6019 56278 88 5 0 7 5 10 136 chain 9799 chr9 138394717 + 113195077 113195205 MER85 139 + 0 139 70819 96 3 14 29 chain 12087 chr9 138394717 + 113209733 113209906 LTR54 533 + 326 505 66690 23 0 1 12 0 2 60 6 10 50 1 0 21 chain 44332 chr9 138394717 + 113210601 113211148 MLT2A2 560 + 9 560 31931 541 0 4 6 chain 84344 chr9 138394717 + 113249754 113250677 L1PA3long 6157 + 5224 6146 20744 83 1 0 839 chain 34660 chr9 138394717 + 113360855 113361315 MER31A 484 + 0 478 38246 96 3 1 209 1 0 69 0 2 19 4 23 59 chain 7659 chr9 138394717 + 113380068 113380192 MER39B 650 + 464 579 75727 75 18 9 31 chain 26765 chr9 138394717 + 113607552 113607850 AluYb8 318 + 0 318 46594 54 0 21 57 1 0 186 chain 20185 chr9 138394717 + 113637132 113637502 MSTA 426 + 0 405 56158 96 12 33 14 9 13 23 5 5 21 38 40 55 10 18 87 chain 24300 chr9 138394717 + 113685692 113686066 THE1C 375 + 0 375 50327 40 0 5 42 5 6 86 43 39 132 1 0 25 chain 3174 chr9 138394717 + 113762614 113762647 LTR33 499 + 16 49 98149 33 chain 4413 chr9 138394717 + 113792388 113792440 MER81 114 + 62 114 88822 52 chain 4558 chr9 138394717 + 114125983 114126082 MIR 256 + 36 136 88026 18 33 34 48 chain 11364 chr9 138394717 + 114286625 114286748 L1PA4 6152 + 6025 6148 67979 123 chain 5762 chr9 138394717 + 114313295 114313371 MADE1 96 + 5 96 82080 39 0 15 37 chain 4682 chr9 138394717 + 114468094 114468147 MIR 256 + 72 125 87368 53 chain 27975 chr9 138394717 + 114580388 114580916 MER50 708 + 142 683 44908 33 29 43 73 128 127 265 chain 13048 chr9 138394717 + 114722387 114722561 L1PB4 2604 + 2399 2572 65027 154 5 4 15 chain 15929 chr9 138394717 + 114729881 114730105 L1PA8 5853 + 5633 5853 61118 45 13 11 51 2 1 25 1 0 87 chain 79678 chr9 138394717 + 114740592 114741779 L1PB1 5432 + 4251 5413 21699 40 0 7 311 0 4 15 3 0 41 5 10 424 1 2 8 4 1 24 1 0 8 22 12 11 3 1 50 19 17 44 1 0 6 22 10 30 3 1 4 1 0 12 1 0 4 1 0 22 1 0 21 1 0 13 1 0 9 chain 27876 chr9 138394717 + 114752021 114752321 AluYd8 298 + 0 296 45070 114 4 0 182 chain 12854 chr9 138394717 + 114802069 114802243 MER67C 710 + 509 687 65343 39 5 9 130 chain 8207 chr9 138394717 + 114822573 114822673 L1PA16 3655 + 3475 3575 74400 100 chain 30595 chr9 138394717 + 114849069 114849456 L1PA8 5853 + 5472 5853 41469 92 1 0 44 2 0 74 1 0 8 1 0 50 2 1 19 2 1 79 0 1 12 chain 264067 chr9 138394717 + 114869981 114874185 L1P2 5180 + 370 4002 7852 76 19 0 59 12 2 8 1 0 47 75 1 172 27 6 32 10 25 142 12 31 35 7 16 18 4 5 4 1 0 64 0 1 4 1 0 64 9 12 119 1 0 5 3 4 126 10 11 152 0 1 193 0 2 11 4 0 221 3 6 139 521 0 391 6 10 79 0 2 36 8 7 63 0 1 5 9 12 301 0 1 64 0 1 75 0 4 382 0 14 63 15 12 260 1 0 35 chain 44551 chr9 138394717 + 114890146 114891091 L1M1 2793 + 568 1399 31803 11 1 0 11 3 0 9 130 62 30 70 53 21 26 21 16 1 0 27 4 3 7 1 0 54 18 15 43 0 1 51 1 0 143 1 0 33 2 1 65 5 0 24 4 0 6 12 9 115 chain 10939 chr9 138394717 + 114949216 114949393 MER30 238 + 36 238 68636 68 12 28 21 5 7 39 2 9 30 chain 59596 chr9 138394717 + 114967852 114968604 MER4E1 777 + 17 770 26486 169 2 9 346 24 18 211 chain 96233 chr9 138394717 + 114975245 114976328 L1PA4 6152 + 4437 5521 18744 7 0 1 1076 chain 22402 chr9 138394717 + 115216649 115217006 THE1B 368 + 0 367 53268 169 1 0 19 32 39 8 5 0 7 0 8 95 7 8 14 chain 39390 chr9 138394717 + 115346204 115346754 MLT2A2 560 + 0 560 35090 360 21 22 17 3 14 32 1 0 69 1 0 46 chain 49277 chr9 138394717 + 115355397 115356124 HSMAR1 1287 + 525 1263 29841 38 0 1 6 1 0 36 0 6 132 3 2 163 69 75 67 0 1 39 1 0 172 chain 22612 chr9 138394717 + 115358345 115358727 THE1D 372 + 0 372 52968 75 19 0 109 52 58 32 0 4 62 2 1 31 chain 64336 chr9 138394717 + 115419589 115420307 L1PA3long 6157 + 5446 6157 25341 39 7 0 672 chain 82316 chr9 138394717 + 115429281 115430212 L1PA3long 6157 + 3931 4866 21173 261 1 2 158 0 1 439 0 2 72 chain 39048 chr9 138394717 + 115473180 115473632 LTR7 482 + 0 482 35320 249 1 0 12 0 31 190 chain 293854 chr9 138394717 + 115473634 115477377 HERVH-int 3825 + 0 3821 7018 534 200 6 30 1 0 9 2 1 24 29 0 13 4 21 12 6 26 21 1 0 58 0 1 7 0 2 14 0 3 653 0 1 18 0 2 227 6 33 290 1 15 228 0 1 820 14 19 28 11 221 116 0 1 366 chain 2502 chr9 138394717 + 115474180 115474225 HERVH-int 3825 + 751 790 103644 29 3 0 5 3 0 5 chain 5644 chr9 138394717 + 115474256 115474357 HERVH-int 3825 + 436 534 82590 52 2 0 12 21 20 14 chain 39410 chr9 138394717 + 115478469 115478918 LTR7 482 + 0 480 35069 264 0 31 185 chain 23681 chr9 138394717 + 115521807 115522173 THE1C 375 + 6 375 51304 12 0 1 54 40 41 66 14 15 180 chain 58821 chr9 138394717 + 115528217 115528858 L1PA2 6032 + 4529 5172 26734 467 0 2 174 chain 23550 chr9 138394717 + 115534728 115535083 L1PA8 5853 + 5505 5853 51502 59 1 0 41 6 4 66 19 17 48 2 1 19 3 2 91 chain 26459 chr9 138394717 + 115565873 115566230 THE1B 368 + 0 359 47041 15 2 0 25 0 5 127 15 14 173 chain 62436 chr9 138394717 + 115639729 115640419 L1PA4 6152 + 5463 6152 25767 671 1 0 18 chain 6803 chr9 138394717 + 115692576 115692656 MER20 218 + 113 194 78310 62 0 1 18 chain 154869 chr9 138394717 + 115707603 115709392 L1PA6 6164 + 4379 6162 12065 703 0 2 1016 5 1 55 4 0 6 chain 471177 chr9 138394717 + 115723659 115729942 L1PA8A 6298 + 34 6288 3824 6 1 0 12 5 4 9 2 0 8 12 4 14 5 0 8 2 4 18 12 8 19 1 0 6 27 24 11 2 0 15 45 38 10 7 9 5 2 0 42 2 1 21 8 0 78 2 0 13 17 14 33 15 0 7 4 19 17 1 0 264 2 1 314 0 1 13 0 4 33 0 11 78 1 0 57 0 2 202 0 4 393 2 1 357 0 2 29 0 1 210 20 13 281 0 1 169 0 1 156 1 4 95 1 2 52 5 6 137 1 0 140 0 1 280 5 6 46 1 3 475 0 12 16 7 11 149 0 2 21 0 1 19 0 2 119 3 4 37 4 1 153 8 9 38 0 1 109 1 0 5 2 1 91 0 2 68 29 0 933 0 1 127 chain 19251 chr9 138394717 + 115763004 115763372 THE1B 368 + 0 368 57291 50 23 24 95 2 0 5 3 5 19 0 3 9 0 4 18 1 0 5 14 13 61 38 32 25 chain 64726 chr9 138394717 + 115769211 115769901 L1PA3long 6157 + 4323 5013 25254 690 chain 15675 chr9 138394717 + 115785582 115785793 L1PA8 5853 + 5646 5853 61429 33 1 0 9 1 0 52 2 1 19 1 0 93 chain 104300 chr9 138394717 + 115802461 115803621 L1PA4 6152 + 4676 5837 17783 624 0 1 536 chain 4799 chr9 138394717 + 115812108 115812172 L1MA8 2339 + 2195 2257 86704 41 2 0 21 chain 14537 chr9 138394717 + 115832696 115833006 THE1D 372 + 41 372 62861 15 44 55 55 63 73 133 chain 15280 chr9 138394717 + 115837959 115838177 MER30 238 + 0 232 61942 105 8 19 71 4 7 30 chain 97864 chr9 138394717 + 115859642 115860821 L1PA7 6471 + 3456 4644 18541 548 7 6 277 1 10 277 1 0 4 0 1 4 0 1 60 chain 153943 chr9 138394717 + 115919039 115920728 L1PA3long 6157 + 3230 4918 12114 32 0 1 4 1 0 1627 1 0 24 chain 17807 chr9 138394717 + 115927246 115927620 THE1D 372 + 0 370 58884 40 16 7 27 3 0 6 12 16 76 78 81 82 1 2 33 chain 9710 chr9 138394717 + 115952297 115952436 L1PA8 5853 + 5716 5853 71026 24 2 1 19 2 1 92 chain 3345 chr9 138394717 + 115974171 115974214 L1MC2 1988 + 1801 1843 96644 37 1 0 5 chain 2654 chr9 138394717 + 116111730 116111825 L1MD2 1676 + 1349 1448 102707 30 46 51 11 1 0 7 chain 92962 chr9 138394717 + 116120668 116121767 L1P3 4156 + 2647 3756 19184 794 4 6 99 0 8 202 chain 3601 chr9 138394717 + 116175301 116175397 L1MA8 2339 + 2169 2264 94415 25 22 24 15 6 4 20 1 0 7 chain 2868 chr9 138394717 + 116199004 116199076 MADE1 96 + 9 96 101078 21 16 31 35 chain 29558 chr9 138394717 + 116267591 116267909 AluYb8 318 + 0 316 42542 123 2 0 193 chain 8681 chr9 138394717 + 116356847 116356958 L1PA8 5853 + 5742 5852 73260 18 4 3 89 chain 5811 chr9 138394717 + 116393590 116393670 MADE1 96 + 0 96 81869 42 1 17 37 chain 44548 chr9 138394717 + 116436706 116437207 L1PA3long 6157 + 5644 6157 31805 363 1 3 80 0 10 57 chain 30831 chr9 138394717 + 116524923 116525310 THE1D-int 1627 + 23 408 41283 333 2 0 52 chain 323997 chr9 138394717 + 116612164 116615885 L1PA5 6144 + 2422 6144 6337 237 0 1 99 0 1 179 1 2 152 0 2 62 6 1 252 4 1 444 0 1 485 0 4 949 1 0 850 chain 19566 chr9 138394717 + 116661786 116662018 L1PA5 6144 + 5907 6144 56938 219 2 7 11 chain 23373 chr9 138394717 + 116673886 116674245 LTR8 732 + 36 420 51811 6 6 0 114 43 44 41 0 2 8 0 1 73 0 27 68 chain 90966 chr9 138394717 + 116675556 116677899 HUERS-P1-int 2401 + 170 2139 19509 31 9 0 4 48 0 29 1 0 8 6 1 34 4 0 13 11 8 15 42 20 12 42 14 13 1 0 12 2 0 44 3 0 7 1 0 34 55 35 26 7 4 14 10 1 16 33 29 87 1 2 8 2 0 24 1 5 107 11 3 175 1 0 14 1 0 5 5 3 36 19 14 17 0 1 27 13 10 28 3 0 80 50 46 63 0 2 29 2 0 5 1 0 19 1 0 40 34 33 61 2 0 4 0 1 35 3 4 14 3 0 37 1 2 19 2 0 8 4 0 28 91 70 15 9 0 18 5 0 9 4 0 14 4 0 6 184 97 6 1 0 12 2 1 36 1 0 15 5 0 13 19 0 8 3 0 3 1 0 22 33 22 4 1 0 9 9 7 47 2 0 15 chain 314517 chr9 138394717 + 116679584 116683036 L1PA3long 6157 + 2700 6157 6516 85 0 4 1157 0 1 2210 chain 29245 chr9 138394717 + 116703420 116703739 L1PA2 6032 + 5713 6032 42973 319 chain 22815 chr9 138394717 + 116710462 116710760 AluSp 311 + 14 309 52635 34 12 11 118 2 0 132 chain 29313 chr9 138394717 + 116714797 116715108 AluYa5 310 + 0 310 42859 132 1 0 178 chain 4605 chr9 138394717 + 116727742 116727803 MIRb 242 + 54 113 87769 13 2 0 46 chain 7132 chr9 138394717 + 116826182 116826361 L1M2a1 1281 + 980 1119 77161 80 82 42 17 chain 12543 chr9 138394717 + 116830931 116831150 L1PB4 2604 + 2361 2543 65915 19 43 6 157 chain 11809 chr9 138394717 + 116835636 116835777 MER4E1 777 + 626 767 67187 141 chain 19977 chr9 138394717 + 116843069 116843375 L1PA16 3655 + 3221 3533 56417 63 10 8 47 0 2 11 1 0 13 5 4 20 4 5 22 0 7 110 chain 18878 chr9 138394717 + 116911628 116911871 AluY 311 + 6 261 57669 106 0 1 48 5 14 32 5 7 47 chain 27013 chr9 138394717 + 116917863 116918200 THE1A 353 + 0 336 46251 109 2 1 226 chain 29426 chr9 138394717 + 117039198 117039595 L1PA8 5853 + 5463 5853 42700 99 1 0 48 2 0 67 3 2 20 1 0 41 2 1 19 1 0 93 chain 4223 chr9 138394717 + 117056196 117056288 MLT1F2 592 + 497 591 89986 45 27 29 20 chain 11033 chr9 138394717 + 117064488 117064637 L1PB4 2604 + 2422 2570 68508 130 1 0 18 chain 22218 chr9 138394717 + 117171497 117171869 THE1D 372 + 0 372 53526 15 0 2 145 21 17 7 0 7 37 0 3 5 26 17 71 15 16 30 chain 4263 chr9 138394717 + 117237147 117237226 MADE1 96 + 0 96 89746 23 3 4 12 4 20 37 chain 6260 chr9 138394717 + 117309879 117309984 MER45A 178 + 62 178 80126 42 19 30 44 chain 3783 chr9 138394717 + 117353763 117353807 L1MC1 2226 + 1930 1974 92967 44 chain 26498 chr9 138394717 + 117518308 117518668 THE1B 368 + 0 368 46982 40 0 15 117 5 4 22 6 1 94 1 0 75 chain 30354 chr9 138394717 + 117571185 117571599 MER51B 395 + 0 395 41709 23 0 1 9 19 6 149 6 0 57 1 0 150 chain 9694 chr9 138394717 + 117626248 117626447 L1MA3 4352 + 4157 4322 71060 4 0 1 73 4 0 25 3 1 21 1 0 6 1 0 15 33 6 13 chain 4776 chr9 138394717 + 117666358 117666421 Tigger1 2417 + 2210 2271 86824 46 2 0 15 chain 12597 chr9 138394717 + 117666527 117666697 Tigger1 2417 + 2206 2374 65802 50 2 0 118 chain 23408 chr9 138394717 + 117675723 117676092 THE1D 372 + 0 357 51745 13 0 2 25 12 0 129 27 25 113 8 9 24 1 0 17 chain 20900 chr9 138394717 + 117698132 117698448 THE1C 375 + 1 313 55254 17 0 1 4 1 0 43 6 4 55 3 0 48 21 22 118 chain 18934 chr9 138394717 + 117772083 117772307 L1PA6 6164 + 5937 6161 57613 224 chain 29900 chr9 138394717 + 117835368 117835815 MLT2A1 477 + 0 477 42135 22 1 2 144 8 5 6 0 1 23 0 1 154 5 1 10 35 69 39 chain 116237 chr9 138394717 + 117851844 117853232 LTR12C 1709 + 0 1709 16180 294 1 2 140 0 1 103 3 43 67 0 278 184 1 0 5 3 1 106 0 4 481 chain 7465 chr9 138394717 + 117877282 117877443 L1PB1 5432 + 5280 5420 76212 16 14 1 30 22 17 26 1 0 21 1 0 13 1 0 16 chain 3344 chr9 138394717 + 117882523 117882560 MSTA 426 + 389 426 96652 37 chain 119213 chr9 138394717 + 117909285 117910995 L1PB1 5432 + 3734 5424 15654 103 0 2 106 0 5 677 11 8 169 3 11 199 0 2 48 0 1 38 1 0 10 63 54 50 8 6 14 1 0 43 1 0 16 27 15 16 12 9 10 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 4467 chr9 138394717 + 117950373 117950422 L1P1 4361 + 1063 1112 88509 49 chain 53894 chr9 138394717 + 118019457 118020074 L1PA5 6144 + 5519 6135 28257 288 1 0 328 chain 8820 chr9 138394717 + 118041504 118041599 L1PA2 6032 + 5937 6032 72947 95 chain 99138 chr9 138394717 + 118041870 118043145 L1PA8 5853 + 4589 5853 18395 145 0 1 274 9 0 24 0 1 530 1 0 44 2 0 66 18 16 4 0 1 45 2 1 19 2 1 37 0 2 53 chain 34469 chr9 138394717 + 118217401 118217799 L1PA7 6471 + 6072 6466 38379 66 1 0 317 3 0 11 chain 21566 chr9 138394717 + 118292765 118293018 L1PA5 6144 + 5889 6142 54414 253 chain 56527 chr9 138394717 + 118372721 118373438 L1PA5 6144 + 5458 6143 27419 342 30 6 162 4 5 38 9 0 132 chain 508031 chr9 138394717 + 118504546 118510512 L1PA5 6144 + 18 5969 2845 1151 9 0 94 16 0 931 0 2 395 0 1 1745 0 4 286 3 0 640 0 5 237 0 1 459 chain 59799 chr9 138394717 + 118556862 118557601 L1PA8 5853 + 5120 5853 26431 4 0 1 437 1 0 45 3 1 25 0 1 45 1 0 9 1 0 15 1 0 36 3 2 21 1 0 91 chain 40243 chr9 138394717 + 118626621 118627157 L1PA8 5853 + 3607 4143 34483 51 0 1 293 1 0 118 3 2 9 5 6 56 chain 15680 chr9 138394717 + 118641017 118641230 LTR46-int 301 + 95 299 61423 56 1 0 109 9 1 38 chain 31384 chr9 138394717 + 118688128 118688599 MLT2A2 560 + 0 560 40823 180 2 0 78 23 0 37 9 118 43 0 5 35 5 4 5 0 1 54 chain 42717 chr9 138394717 + 118779814 118780362 MLT2A2 560 + 2 560 32938 180 1 0 217 3 14 147 chain 5365 chr9 138394717 + 118780952 118781022 L1MA3 4352 + 4159 4233 83877 33 0 4 37 chain 23796 chr9 138394717 + 118835963 118836334 THE1B 368 + 0 368 51114 59 28 28 80 10 9 28 3 0 5 1 4 80 1 0 47 1 0 28 chain 4201 chr9 138394717 + 118853421 118853475 L1MEf 1413 + 966 1020 90113 54 chain 20665 chr9 138394717 + 118862942 118863241 L1PREC2 3366 + 2459 2775 55548 52 12 11 129 10 21 76 0 7 20 chain 69088 chr9 138394717 + 118894270 118895086 L1PA7 6471 + 5651 6468 24198 191 3 5 246 0 1 365 2 0 9 chain 131185 chr9 138394717 + 118922462 118923904 L1PA3long 6157 + 4702 6149 13907 608 0 4 693 0 1 141 chain 2933 chr9 138394717 + 118933030 118933063 MER5B 177 + 138 171 100555 33 chain 67429 chr9 138394717 + 118971161 118971932 L1PA5 6144 + 5360 6144 24591 318 0 20 440 7 0 6 chain 21537 chr9 138394717 + 119005967 119006192 AluYa5 310 + 85 310 54452 225 chain 22860 chr9 138394717 + 119043699 119043947 AluYd8 298 + 31 280 52562 232 0 1 16 chain 10524 chr9 138394717 + 119079033 119079184 MER30 238 + 58 224 69371 51 4 22 68 3 0 25 chain 179207 chr9 138394717 + 119133669 119135628 L1PA3long 6157 + 3926 5890 10620 1224 0 1 159 0 4 576 chain 27421 chr9 138394717 + 119157023 119157376 THE1A 353 + 0 353 45678 68 1 2 40 1 0 92 1 0 57 0 1 93 chain 545282 chr9 138394717 + 119169116 119175132 L1PA2 6032 + 0 6032 1021 72 1 2 182 1 0 27 1 0 55 5 4 84 0 1 313 1 0 27 0 1 2370 0 2 1289 9 0 356 0 4 108 0 22 1098 2 0 15 chain 9061 chr9 138394717 + 119206517 119206628 MLT1B 390 + 231 342 72421 111 chain 28441 chr9 138394717 + 119246176 119246620 MLT2A2 560 + 0 560 44206 179 2 1 13 36 39 63 0 98 12 1 12 39 0 5 38 1 0 6 0 1 54 chain 4332 chr9 138394717 + 119398785 119399062 MER33 330 + 6 283 89278 26 210 210 41 chain 97478 chr9 138394717 + 119427196 119428440 L1PA8 5853 + 4072 5319 18595 180 0 1 87 5 2 148 0 1 400 1 2 89 1 7 17 1 0 3 2 0 310 chain 5943 chr9 138394717 + 119448739 119448871 MER20 218 + 38 174 81308 28 41 46 50 1 0 12 chain 18586 chr9 138394717 + 119455852 119456180 THE1C 375 + 0 329 58012 13 2 0 34 69 67 106 0 3 66 5 7 33 chain 121673 chr9 138394717 + 119475581 119476936 L1PA4 6152 + 4788 6143 15233 1355 chain 436533 chr9 138394717 + 119502617 119507952 L1PA7 6471 + 741 6467 4636 434 0 1 1456 0 2 48 0 1 11 0 1 6 5 3 182 0 4 210 0 4 430 2 1 320 0 1 481 1 2 291 5 4 207 0 359 130 5 6 55 0 18 213 1 5 76 1 0 320 0 1 47 2 3 231 3 4 6 2 0 144 2 0 8 chain 97486 chr9 138394717 + 119517848 119518969 L1PA5 6144 + 5009 6124 18593 475 1 0 239 5 0 401 chain 18197 chr9 138394717 + 119536298 119536506 L1PA7 6471 + 6227 6432 58465 86 1 0 7 2 0 112 chain 18450 chr9 138394717 + 119546600 119546946 THE1B 368 + 2 368 58166 45 68 75 8 0 2 39 1 0 29 1 0 14 22 35 119 chain 80712 chr9 138394717 + 119561035 119561941 L1PA5 6144 + 5238 6142 21487 573 2 0 331 chain 73123 chr9 138394717 + 119582865 119583717 L1PA7 6471 + 4321 5181 23293 200 0 4 143 0 4 509 chain 4746 chr9 138394717 + 119604794 119604853 MLT1C 463 + 59 118 86981 59 chain 33027 chr9 138394717 + 119620422 119620925 L1PA13 3608 + 3001 3488 39496 67 1 4 86 2 1 114 3 1 62 23 12 46 1 0 17 0 1 31 9 5 20 1 0 20 chain 3301 chr9 138394717 + 119635932 119635987 MLT1G1 539 + 3 59 97006 16 7 8 32 chain 18820 chr9 138394717 + 119636843 119637207 THE1B 368 + 0 368 57752 107 27 28 34 67 71 66 7 6 56 chain 6894 chr9 138394717 + 119654959 119655146 MER33 330 + 57 249 77971 38 0 1 4 55 57 22 0 3 9 18 17 41 chain 28466 chr9 138394717 + 119769567 119769881 AluYa5 310 + 0 308 44174 97 2 0 29 4 0 182 chain 28223 chr9 138394717 + 119822471 119822823 THE1A 353 + 2 353 44528 108 1 0 88 1 0 79 0 1 75 chain 130363 chr9 138394717 + 119822823 119824397 THE1A-int 1579 + 0 1574 13994 435 5 7 841 1 2 187 3 0 102 chain 26171 chr9 138394717 + 119824402 119824756 THE1A 353 + 0 353 47472 89 0 1 16 15 14 78 1 0 155 chain 4274 chr9 138394717 + 119902043 119902092 L1P2 5180 + 2063 2112 89664 49 chain 54326 chr9 138394717 + 119931384 119932026 L1PA5 6144 + 5502 6143 28113 383 1 0 258 chain 40002 chr9 138394717 + 120013311 120013855 MLT2A2 560 + 4 560 34657 29 0 5 130 10 7 31 6 5 190 0 11 148 chain 23380 chr9 138394717 + 120020376 120020730 THE1A 353 + 0 353 51800 12 3 1 34 7 8 35 5 4 89 8 9 6 1 0 9 0 1 145 chain 561483 chr9 138394717 + 120055235 120061264 L1PA2 6032 + 0 6029 145 257 1 0 4255 0 1 1516 chain 72519 chr9 138394717 + 120123855 120124663 L1PA4 6152 + 5071 5879 23430 808 chain 19339 chr9 138394717 + 120172371 120172774 L1PB1 5432 + 5060 5427 57192 43 1 2 9 3 0 24 2 0 8 1 0 12 15 9 44 0 1 6 2 1 18 6 5 37 2 1 16 3 0 6 16 6 18 3 1 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 229038 chr9 138394717 + 120178966 120181724 L1PA8A 6298 + 2172 4954 8776 213 0 11 104 4 1 39 0 1 399 0 6 458 0 1 84 1 2 178 0 1 208 0 1 224 0 7 30 1 0 135 0 1 408 2 1 176 2 1 92 chain 24436 chr9 138394717 + 120199874 120200148 L1PA7 6471 + 5719 5993 50119 274 chain 18712 chr9 138394717 + 120215123 120215386 L1PB2 3958 + 3577 3837 57886 40 1 0 40 0 1 21 1 0 75 2 0 11 1 8 7 1 0 4 6 0 53 chain 37992 chr9 138394717 + 120224477 120224897 L1PA3long 6157 + 5736 6156 36080 420 chain 4759 chr9 138394717 + 120267451 120267588 L1PB1 5432 + 5242 5362 86914 39 1 0 15 66 50 16 chain 59678 chr9 138394717 + 120273866 120274542 L1PA5 6144 + 5093 5768 26464 194 1 0 481 chain 23450 chr9 138394717 + 120276943 120277287 THE1B 368 + 0 368 51677 44 0 15 110 1 0 29 35 45 125 chain 97570 chr9 138394717 + 120304385 120305808 SVA_A 1864 + 25 1864 18576 22 5 0 15 5 23 8 0 11 73 2 0 324 0 40 35 10 343 31 2 0 66 8 5 57 19 53 10 5 4 21 3 0 24 60 11 73 8 42 29 0 16 123 3 1 362 0 4 7 7 0 6 chain 27783 chr9 138394717 + 120367250 120367560 AluYb8 318 + 11 314 45205 115 4 0 181 3 0 7 chain 315991 chr9 138394717 + 120427787 120431267 L1PA3long 6157 + 2674 6152 6483 1309 7 6 820 1 0 1343 chain 135540 chr9 138394717 + 120495107 120497431 SVA_F 1814 + 335 1814 13482 553 1 0 10 807 0 49 0 15 227 51 0 615 1 0 10 chain 21433 chr9 138394717 + 120495709 120496148 SVA_F 1814 + 937 1115 41987 10 280 19 149 chain 18479 chr9 138394717 + 120495720 120495999 SVA_F 1814 + 962 1191 51799 30 49 0 146 2 1 52 chain 4325 chr9 138394717 + 120495750 120495799 SVA_F 1814 + 1119 1168 57883 49 chain 11456 chr9 138394717 + 120496148 120496340 SVA_F 1814 + 924 1131 40493 23 0 15 169 chain 3897 chr9 138394717 + 120496354 120496399 SVA_F 1814 + 905 947 83853 25 3 0 17 chain 2910 chr9 138394717 + 120496400 120496435 SVA_F 1814 + 1187 1222 92676 35 chain 2839 chr9 138394717 + 120496773 120496805 SVA_F 1814 + 869 900 80006 29 1 0 2 chain 58894 chr9 138394717 + 120515683 120516345 L1PA4 6152 + 5305 5970 26701 235 0 3 427 chain 36066 chr9 138394717 + 120530598 120531003 L1PA5 6144 + 5725 6132 37371 396 0 2 9 chain 10359 chr9 138394717 + 120576927 120577480 L1MB3 1562 + 1252 1464 69687 99 1 0 18 333 23 26 56 26 20 chain 61363 chr9 138394717 + 120636706 120637433 SVA_B 1603 + 697 1597 26020 87 0 164 27 1 0 34 1 0 154 0 4 62 0 4 15 0 3 298 1 0 9 0 1 38 chain 65722 chr9 138394717 + 120678856 120679636 L1PA5 6144 + 5365 6144 25028 319 8 9 439 3 1 11 chain 21510 chr9 138394717 + 120683322 120683684 THE1D 372 + 1 360 54499 14 5 7 31 19 10 103 0 6 6 35 33 149 chain 6665 chr9 138394717 + 120686404 120686494 L1MB2 1706 + 1598 1693 78752 13 1 0 53 0 6 23 chain 92451 chr9 138394717 + 120746335 120747492 LTR12C 1709 + 138 1709 19277 132 20 12 56 0 43 269 0 278 184 9 6 106 0 4 175 0 101 37 1 0 168 chain 2989 chr9 138394717 + 120818769 120818802 MADE1 96 - 63 96 99962 33 chain 5500 chr9 138394717 + 120917405 120917489 MIR 256 + 114 199 83229 39 7 8 38 chain 23355 chr9 138394717 + 120956307 120956681 L1PREC2 3366 + 2457 2842 51851 224 17 30 7 0 1 21 14 12 37 21 20 33 chain 128189 chr9 138394717 + 121027389 121028841 L1PA6 6164 + 4699 6156 14255 529 0 1 788 0 2 35 0 2 100 chain 463504 chr9 138394717 + 121099026 121104528 L1PA6 6164 + 576 6162 4037 147 9 23 193 1 26 803 0 1 413 1 0 150 1 2 233 2 0 15 10 14 59 0 8 564 0 1 381 0 1 289 7 8 64 0 2 1323 0 4 15 4 7 56 0 17 200 1 2 413 0 2 6 3 1 87 0 4 52 chain 20255 chr9 138394717 + 121118672 121119006 MER2 342 + 0 332 56074 49 39 38 30 2 0 90 10 11 114 chain 17416 chr9 138394717 + 121203171 121203439 7SLRNA 320 + 19 303 59333 73 44 61 7 1 0 143 chain 29145 chr9 138394717 + 121219434 121219801 MER41E 591 + 0 366 43128 127 1 0 239 chain 12092 chr9 138394717 + 121256332 121256993 L1MA4 2864 + 2499 2804 66681 132 491 135 38 chain 2911 chr9 138394717 + 121364916 121364980 MIR 256 + 56 118 100742 31 21 19 12 chain 5588 chr9 138394717 + 121408460 121408526 MER4-int 2692 + 2626 2692 82858 66 chain 51071 chr9 138394717 + 121408536 121409239 MER4A 717 + 2 684 29200 121 12 0 139 0 1 10 1 0 164 0 2 13 10 11 22 26 14 185 chain 75581 chr9 138394717 + 121429105 121430073 LTR5_Hs 974 + 0 974 22698 289 0 1 177 0 1 187 1 0 164 8 15 19 20 18 103 chain 3462 chr9 138394717 + 121435057 121435095 MER65A 464 + 0 38 95530 38 chain 112335 chr9 138394717 + 121436246 121437554 L1PA5 6144 + 4831 6143 16773 494 0 1 168 0 1 331 7 8 120 1 2 187 chain 2958 chr9 138394717 + 121448098 121448149 LTR79 453 + 314 356 100293 35 9 0 7 chain 11905 chr9 138394717 + 121470857 121471007 LTR8 732 + 583 732 66992 72 6 5 72 chain 44735 chr9 138394717 + 121474982 121475530 MER41A 554 + 0 554 31731 199 0 1 269 4 9 76 chain 16955 chr9 138394717 + 121522484 121522699 THE1B 368 + 153 366 59857 21 1 0 81 1 0 111 chain 15595 chr9 138394717 + 121647889 121648255 L1PB1 5432 + 5103 5427 61539 11 1 0 21 1 0 12 1 0 10 4 0 11 3 0 52 2 1 15 1 0 32 13 12 16 26 15 16 2 0 5 29 18 20 1 0 21 1 0 13 6 5 13 2 0 5 chain 16912 chr9 138394717 + 121666497 121666763 L1PA8 5853 + 5609 5853 59899 66 22 4 14 2 0 47 2 1 16 5 4 92 chain 40843 chr9 138394717 + 121790001 121790450 LTR7 482 + 0 482 34065 253 0 32 30 0 1 166 chain 274841 chr9 138394717 + 121790452 121794367 HERVH-int 3825 + 0 3825 7584 161 0 2 310 0 120 11 28 0 13 2 1 13 3 0 7 21 0 19 22 0 41 1 0 31 2 1 49 1 0 291 13 14 153 0 4 190 24 15 19 345 6 129 4 3 318 1 0 4 0 1 1194 8 218 487 chain 41376 chr9 138394717 + 121796319 121796769 LTR7 482 + 0 482 33744 253 0 32 197 chain 53389 chr9 138394717 + 121894262 121894898 L1PA7 6471 + 5828 6459 28435 182 4 1 128 1 0 117 1 0 63 1 2 78 1 0 60 chain 15977 chr9 138394717 + 121906962 121907157 LTR3 431 + 236 431 61053 195 chain 35939 chr9 138394717 + 121909181 121909606 LTR3 431 + 0 431 37445 369 0 6 56 chain 44474 chr9 138394717 + 121911411 121911939 L1PA7 6471 + 5935 6468 31843 303 2 6 32 0 2 31 1 0 159 chain 56364 chr9 138394717 + 121970992 121971747 SVA_F 1814 + 617 1472 27467 19 16 124 6 0 1 8 1 0 13 27 59 8 1 0 28 48 0 64 0 15 39 3 0 10 1 0 166 1 0 4 1 0 291 chain 1983 chr9 138394717 + 121971055 121971082 SVA_F 1814 + 918 945 43223 27 chain 2497 chr9 138394717 + 121971133 121971167 SVA_F 1814 + 962 996 43223 34 chain 31470 chr9 138394717 + 121971758 121972144 L1PA7 6471 + 6086 6469 40756 233 1 2 135 4 0 13 chain 18381 chr9 138394717 + 121973549 121973754 L1PA4 6152 + 5947 6152 58260 205 chain 39741 chr9 138394717 + 122000032 122000884 MER41A 554 + 4 546 34863 145 320 0 170 1 2 44 0 4 4 0 1 30 3 7 135 chain 2241 chr9 138394717 + 122142618 122142739 MIRb 242 + 91 207 105083 11 13 11 4 1 0 14 55 53 23 chain 12594 chr9 138394717 + 122170841 122170982 L1PA7 6471 + 6324 6465 65805 141 chain 3209 chr9 138394717 + 122176403 122176441 MER103C 291 + 127 165 97810 38 chain 15784 chr9 138394717 + 122200460 122200639 MER107 203 + 24 203 61306 179 chain 26558 chr9 138394717 + 122433821 122434186 THE1A 353 + 0 353 46893 107 7 6 17 13 1 175 0 1 46 chain 119697 chr9 138394717 + 122434186 122435755 THE1A-int 1579 + 0 1574 15579 232 0 1 77 12 0 128 0 2 286 1 10 92 9 10 251 14 13 11 15 19 269 0 1 172 chain 26107 chr9 138394717 + 122435785 122436136 THE1A 353 + 0 353 47560 104 17 16 32 0 1 153 0 1 5 0 1 40 chain 37750 chr9 138394717 + 122446876 122447424 LTR19B 566 + 0 563 36242 163 0 4 39 0 2 134 6 5 18 42 50 75 1 3 70 chain 124609 chr9 138394717 + 122469561 122471134 THE1A-int 1579 + 18 1579 14762 443 1 0 397 0 1 21 0 3 136 23 0 443 0 7 32 0 1 77 chain 10758 chr9 138394717 + 122474542 122474673 MER65D 500 + 0 131 68941 131 chain 14592 chr9 138394717 + 122490331 122490516 LTR66 600 + 401 600 62809 14 2 0 42 0 16 127 chain 12101 chr9 138394717 + 122556501 122556677 L1PA8 5853 + 5675 5847 66660 7 1 0 12 2 1 45 2 1 19 2 1 86 chain 13538 chr9 138394717 + 122577993 122578168 L1PB1 5432 + 4824 4998 64269 20 2 1 153 chain 3376 chr9 138394717 + 122610346 122610387 MADE1 96 + 1 43 96331 37 0 1 4 chain 23264 chr9 138394717 + 122616738 122617032 L1P4 1494 + 685 980 51982 15 0 1 279 chain 102096 chr9 138394717 + 122626832 122627948 L1PA3long 6157 + 5045 6157 18053 148 3 0 111 1 0 853 chain 196131 chr9 138394717 + 122648086 122650405 L1PA7 6471 + 3986 6466 9841 447 15 174 601 1 0 413 0 3 368 0 2 137 2 0 335 chain 4529 chr9 138394717 + 122683791 122684063 L1M2 1805 + 251 509 88168 22 198 184 52 chain 19054 chr9 138394717 + 122694122 122694342 L1PA4 6152 + 5927 6152 57490 214 0 5 6 chain 9790 chr9 138394717 + 122698860 122698970 L1PA2 6032 + 5920 6030 70846 110 chain 386880 chr9 138394717 + 122709356 122715151 L1PA5 6144 + 0 5337 5374 89 0 749 331 9 0 240 0 5 243 0 8 96 1 0 52 1 2 123 2 44 211 1254 0 87 0 4 23 7 0 1366 0 1 292 0 1 312 0 1 637 4 0 377 1 0 12 0 6 25 chain 74884 chr9 138394717 + 122710797 122711941 SVA_A 1864 + 6 1847 22869 7 1 0 34 5 0 46 0 11 73 2 0 244 0 489 35 3 0 9 111 311 46 5 1 33 0 16 36 7 8 8 1 0 71 3 1 174 2 0 188 chain 539666 chr9 138394717 + 122759020 122766009 L1PA4 6152 + 0 6150 1358 683 0 3 355 0 1 599 0 8 1176 834 0 684 1 0 51 0 1 121 1 0 2119 12 0 340 3 0 5 1 0 4 chain 6981 chr9 138394717 + 122766532 122766660 L1PB1 5432 + 5308 5427 77666 19 2 0 5 3 2 12 2 0 11 0 1 12 1 0 21 1 0 13 1 0 18 2 0 5 chain 37511 chr9 138394717 + 122775617 122776094 LTR2B 499 + 5 499 36394 7 0 1 59 3 0 39 0 19 178 0 1 8 1 0 182 chain 12713 chr9 138394717 + 122782590 122782748 THE1C 375 + 2 161 65599 120 3 0 20 0 4 15 chain 140291 chr9 138394717 + 122794801 122796781 L1PA7 6471 + 4797 6469 13078 312 5 6 506 1 0 177 304 0 523 0 1 136 5 0 11 chain 78513 chr9 138394717 + 122809056 122809945 MER11D 897 + 0 897 21977 281 1 0 343 0 10 149 1 0 114 chain 161492 chr9 138394717 + 122851487 122853396 SVA_D 2077 + 13 2077 11646 12 0 12 800 40 0 71 2 0 12 2 0 23 56 16 75 1 2 6 0 1 133 0 225 676 chain 4950 chr9 138394717 + 122852449 122852505 SVA_D 2077 + 1257 1313 39598 56 chain 162198 chr9 138394717 + 122866379 122868735 SVA_D 2077 + 8 2056 11597 11 5 6 529 0 2 4 0 40 303 7 5 10 0 36 76 1 0 6 42 16 29 66 17 19 230 0 34 40 0 35 88 0 122 0 49 699 chain 3511 chr9 138394717 + 122867331 122867373 SVA_E 1901 + 1059 1100 36558 36 2 1 4 chain 4096 chr9 138394717 + 122867402 122867451 SVA_E 1901 + 1129 1178 36558 49 chain 11820 chr9 138394717 + 122867510 122867717 SVA_D 2077 + 555 728 37046 15 13 14 15 36 1 128 chain 3164 chr9 138394717 + 122867553 122867588 SVA_D 2077 + 522 557 77433 35 chain 2284 chr9 138394717 + 122867751 122867791 SVA_D 2077 + 762 802 37046 40 chain 5025 chr9 138394717 + 122867826 122867914 SVA_D 2077 + 837 921 37046 71 2 0 10 2 0 3 chain 22408 chr9 138394717 + 122956408 122956667 AluY 311 + 40 300 53260 86 0 1 173 chain 16800 chr9 138394717 + 122958489 122958690 L1PA5 6144 + 5931 6132 60031 201 chain 20763 chr9 138394717 + 122988675 122988960 AluSp 311 + 10 300 55415 77 18 24 21 2 0 143 1 2 23 chain 39297 chr9 138394717 + 123189033 123189472 L1PA4 6152 + 5715 6152 35151 291 2 0 146 chain 32403 chr9 138394717 + 123189474 123189852 L1PA6 6164 + 5782 6159 40038 211 2 1 165 chain 12823 chr9 138394717 + 123207584 123207747 L1PA7 6471 + 6310 6470 65408 99 0 1 54 4 0 6 chain 25821 chr9 138394717 + 123213943 123214492 L1PB1 5432 + 4920 5427 47986 120 2 0 12 4 5 38 9 8 11 47 0 18 3 2 13 13 12 11 2 0 50 2 1 16 1 0 41 7 30 16 10 7 15 2 0 24 1 0 17 13 12 5 1 0 18 2 0 5 chain 55680 chr9 138394717 + 123293215 123293817 L1PA3long 6157 + 5555 6157 27667 602 chain 3198 chr9 138394717 + 123372000 123372035 MIRb 242 + 101 136 97897 35 chain 7409 chr9 138394717 + 123409317 123409518 Tigger4a 237 + 1 212 76373 26 17 0 11 1 18 25 0 1 38 59 68 24 chain 135362 chr9 138394717 + 123428171 123430271 L1PA11 4918 + 2788 4578 13506 21 0 1 560 1 11 50 0 1 113 0 1 185 0 1 89 1 3 21 4 5 43 0 11 6 318 0 92 2 0 142 1 0 128 0 1 89 0 4 22 14 13 6 2 0 68 2 0 13 1 0 20 4 0 11 3 0 3 2 0 8 16 12 12 1 0 13 2 0 11 chain 14324 chr9 138394717 + 123449696 123449983 L1PB1 5432 + 5160 5421 63159 7 2 0 53 2 1 14 2 1 41 7 6 13 1 0 6 16 6 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 10 2 0 7 chain 30426 chr9 138394717 + 123501597 123502034 MLT2A1 477 + 0 477 41656 140 0 1 27 1 5 75 26 25 112 4 0 12 3 39 31 0 4 6 chain 3337 chr9 138394717 + 123502195 123502238 MLT2A2 560 + 519 560 96718 36 2 0 5 chain 33689 chr9 138394717 + 123694824 123695538 MLT2A1 477 + 0 477 38936 140 0 1 27 1 5 32 4 0 47 1 0 147 259 21 26 1 2 29 chain 17400 chr9 138394717 + 123718840 123719141 THE1B 368 + 0 306 59355 102 14 15 60 23 16 7 1 0 14 0 4 6 11 19 63 chain 123433 chr9 138394717 + 123721879 123723457 THE1B-int 1605 + 0 1605 14952 432 12 37 58 1 0 39 0 3 388 1 0 51 0 1 112 21 20 453 1 2 9 chain 209430 chr9 138394717 + 123728771 123731266 L1PA7 6471 + 3963 6468 9369 280 3 4 80 0 4 69 1 0 15 0 1 222 0 3 209 0 1 408 0 1 339 0 4 18 2 0 516 2 1 138 0 2 31 1 0 150 2 0 9 chain 24089 chr9 138394717 + 123804017 123804366 THE1B 368 + 7 356 50662 76 26 27 62 2 1 119 1 0 50 0 1 13 chain 549820 chr9 138394717 + 123903370 123909360 L1PA2 6032 + 12 6032 759 821 0 4 436 0 9 155 0 2 447 1 2 2157 0 13 1960 0 1 13 chain 4079 chr9 138394717 + 123923911 123924094 L1MB7 1623 + 1319 1487 90893 4 1 0 13 40 48 27 44 26 14 6 3 26 1 0 7 chain 4177 chr9 138394717 + 123939895 123939942 MADE1 96 + 48 95 90279 47 chain 38119 chr9 138394717 + 123944544 123944981 L1PA5 6144 + 5703 6140 35974 437 chain 7512 chr9 138394717 + 124089586 124089676 MER5B 177 + 87 177 76099 90 chain 33627 chr9 138394717 + 124141099 124141574 MER41B 635 + 15 522 38981 79 27 60 307 8 7 54 chain 31121 chr9 138394717 + 124143028 124143451 LTR7B 505 + 0 495 41042 105 0 10 60 0 38 12 1 2 6 0 23 21 1 3 85 1 0 76 14 13 41 chain 31003 chr9 138394717 + 124143581 124144006 LTR7B 505 + 0 497 41119 105 0 10 60 0 38 12 3 27 26 0 2 85 1 0 30 0 1 11 1 0 34 14 13 43 chain 23358 chr9 138394717 + 124193242 124193656 MSTA 426 + 0 426 51843 127 11 23 66 14 0 9 6 80 9 60 0 112 chain 23718 chr9 138394717 + 124437520 124437810 AluSc5 308 + 6 296 51254 251 1 0 9 0 1 29 chain 3238 chr9 138394717 + 124539309 124539459 MER58A 224 + 69 214 97593 17 96 90 20 0 1 17 chain 61354 chr9 138394717 + 124585569 124586445 Tigger1 2417 + 873 1782 26023 56 3 14 76 1 0 17 0 3 24 4 12 227 11 14 123 1 0 147 10 12 74 0 7 18 26 27 58 chain 27923 chr9 138394717 + 124633122 124633425 AluYg6 310 + 0 303 44994 303 chain 3917 chr9 138394717 + 124698225 124698268 U5 65 + 1 44 91997 43 chain 3148 chr9 138394717 + 124753161 124753198 MER113 458 + 69 106 98384 37 chain 6666 chr9 138394717 + 124903549 124903667 BC200 147 + 27 138 78747 12 9 15 68 13 0 16 chain 555613 chr9 138394717 + 125010049 125016177 L1PA3long 6157 + 4 6144 377 117 4 7 579 0 1 35 1 0 63 0 1 762 0 1 187 0 1 676 0 3 1131 0 1 742 1 0 1185 0 3 645 chain 21065 chr9 138394717 + 125045928 125046194 L1PB1 5432 + 4838 5103 55040 154 6 5 106 chain 22084 chr9 138394717 + 125052296 125052631 AluSq10 312 + 8 291 53724 170 20 5 16 38 0 31 1 2 59 chain 10891 chr9 138394717 + 125066253 125066436 Tigger3 1187 + 738 920 68711 11 5 4 43 12 11 93 8 9 11 chain 24491 chr9 138394717 + 125080807 125081133 THE1B 368 + 0 340 50042 44 0 15 113 1 0 121 1 0 22 6 7 18 chain 32956 chr9 138394717 + 125081161 125081562 THE1B-int 1605 + 0 416 39545 25 2 0 5 0 16 310 0 1 59 chain 5839 chr9 138394717 + 125083539 125083610 THE1B 368 + 222 293 81740 71 chain 3644 chr9 138394717 + 125083611 125083651 THE1B 368 + 293 333 94067 40 chain 4901 chr9 138394717 + 125105435 125105491 U2 167 + 0 56 86144 56 chain 131770 chr9 138394717 + 125107797 125109363 SVA_C 1631 + 2 1617 13848 8 1 0 6 3 0 6 1 2 552 40 0 274 19 20 8 0 1 18 12 109 74 4 0 531 3 0 6 chain 23553 chr9 138394717 + 125160371 125160718 THE1B 368 + 0 368 51499 44 0 15 72 5 9 32 8 8 10 4 2 58 0 1 36 2 1 18 0 4 58 chain 28884 chr9 138394717 + 125199787 125200098 AluYb8 318 + 0 309 43506 132 2 0 177 chain 23502 chr9 138394717 + 125232803 125233092 AluSc 308 + 8 295 51593 204 3 1 82 chain 21691 chr9 138394717 + 125263204 125263471 AluSc 308 + 37 303 54237 26 2 1 239 chain 3710 chr9 138394717 + 125325855 125325903 Tigger7 736 + 67 119 93542 31 0 4 17 chain 11848 chr9 138394717 + 125343123 125343313 MER30 238 + 40 238 67117 30 9 13 20 12 19 77 3 0 39 chain 24709 chr9 138394717 + 125392693 125392977 AluSp 311 + 11 295 49712 284 chain 19735 chr9 138394717 + 125431235 125431513 AluJb 308 + 30 295 56746 80 1 0 14 14 5 161 3 0 5 chain 40999 chr9 138394717 + 125567210 125567732 MER41A 554 + 18 554 33970 22 0 1 59 1 10 54 0 2 174 2 3 96 1 2 113 chain 43595 chr9 138394717 + 125571902 125572541 PABL_A-int 1935 + 1206 1911 32385 263 1 86 51 1 0 85 17 18 18 1 0 36 3 1 74 1 0 17 1 0 8 23 16 8 1 0 7 9 3 14 chain 38816 chr9 138394717 + 125573126 125573661 MER41A 554 + 13 554 35491 174 0 10 7 23 13 178 11 15 105 0 2 37 chain 160852 chr9 138394717 + 125576479 125578433 SVA_D 2077 + 12 2065 11691 41 17 0 671 0 3 34 3 0 123 0 83 25 0 1 29 0 51 115 49 0 32 1 0 31 4 0 11 0 63 53 0 12 11 50 9 415 0 1 239 chain 3754 chr9 138394717 + 125577537 125577586 SVA_D 2077 + 1315 1364 39386 49 chain 3830 chr9 138394717 + 125577729 125577779 SVA_D 2077 + 1487 1537 39386 50 chain 55915 chr9 138394717 + 125580028 125580693 L1PA6 6164 + 5497 6162 27587 519 1 2 129 1 0 15 chain 163352 chr9 138394717 + 125622838 125625265 SVA_F 1814 + 14 1814 11526 866 2 0 33 49 0 35 578 15 38 1 0 9 1 0 160 4 0 17 1 0 611 0 1 4 7 0 11 chain 1555 chr9 138394717 + 125623762 125623788 SVA_F 1814 + 937 977 42791 10 1 15 15 chain 25717 chr9 138394717 + 125623823 125624253 SVA_F 1814 + 1012 1293 42791 79 50 0 183 99 0 19 chain 2281 chr9 138394717 + 125623902 125623927 SVA_F 1814 + 1267 1291 62803 7 1 0 17 chain 2040 chr9 138394717 + 125623927 125623949 SVA_F 1814 + 989 1011 105635 22 chain 5697 chr9 138394717 + 125624135 125624234 SVA_F 1814 + 1098 1197 43314 99 chain 4258 chr9 138394717 + 125624253 125624327 SVA_F 1814 + 1216 1289 43314 58 1 0 15 chain 5569 chr9 138394717 + 125624327 125624399 SVA_F 1814 + 1114 1186 50116 72 chain 3024 chr9 138394717 + 125658359 125658393 U2 167 + 0 34 99552 34 chain 14088 chr9 138394717 + 125665421 125665599 LTR7B 505 + 256 437 63474 22 0 2 82 1 0 46 0 2 27 chain 7534 chr9 138394717 + 125735283 125735379 L1MB3 1562 + 1140 1235 76041 61 1 0 34 chain 19910 chr9 138394717 + 125811325 125811681 THE1C 375 + 0 375 56511 15 2 0 32 0 6 6 26 27 27 0 1 60 5 8 11 39 49 133 chain 11046 chr9 138394717 + 126125140 126125269 MER85 139 + 0 139 68492 90 0 10 39 chain 3238 chr9 138394717 + 126135748 126135782 HERVL-int 5654 + 5620 5654 97595 34 chain 33328 chr9 138394717 + 126135782 126136217 MLT2A1 477 + 0 477 39237 147 0 5 16 5 2 9 0 1 24 0 1 178 0 2 16 3 39 37 chain 3249 chr9 138394717 + 126202682 126202719 MER45C 884 + 128 165 97493 37 chain 26359 chr9 138394717 + 126252171 126252517 THE1B 368 + 0 368 47183 44 0 15 110 4 3 134 5 13 49 chain 3313 chr9 138394717 + 126299894 126299935 MIRb 242 + 66 107 96894 41 chain 19695 chr9 138394717 + 126322841 126323132 L1PA8 5853 + 5568 5853 56793 40 2 0 70 2 1 13 1 0 36 16 15 17 1 0 93 chain 3699 chr9 138394717 + 126530513 126530570 MER53 195 + 0 57 93613 35 3 2 4 0 1 15 chain 83463 chr9 138394717 + 126716511 126717527 LTR5A 1029 + 0 1029 20920 134 0 13 443 0 2 5 18 16 258 6 0 8 1 7 143 chain 4828 chr9 138394717 + 126718247 126718327 MADE1 96 + 0 96 86550 23 8 24 49 chain 20067 chr9 138394717 + 126754005 126754270 AluSp 311 + 47 287 56297 9 0 1 75 1 0 90 25 0 65 chain 25837 chr9 138394717 + 126784844 126785178 THE1A 353 + 0 341 47960 110 1 0 18 0 6 6 2 4 197 chain 24051 chr9 138394717 + 126844920 126845203 AluSp 311 + 18 299 50723 114 2 0 167 chain 19325 chr9 138394717 + 126899292 126899511 AluSc 308 + 72 291 57212 219 chain 145560 chr9 138394717 + 126950504 126952129 L1PA3long 6157 + 2832 4458 12650 338 3 1 878 2 1 303 0 4 101 chain 496474 chr9 138394717 + 126993606 126999178 L1PA4 6152 + 38 6152 3249 58 0 525 114 0 1 216 9 8 73 2 1 113 0 1 88 1 0 1973 1 0 93 0 1 899 0 2 69 0 4 75 0 8 918 0 4 270 1 0 444 0 1 155 chain 40884 chr9 138394717 + 127003105 127003546 L1PA2 6032 + 4920 5361 34037 441 chain 4553 chr9 138394717 + 127019126 127019263 MER105 203 + 22 203 88052 17 13 16 19 26 66 38 12 13 12 chain 3449 chr9 138394717 + 127158236 127158307 MADE1 96 + 0 96 95657 17 0 25 54 chain 23075 chr9 138394717 + 127230378 127230672 AluSp 311 + 1 299 52253 81 1 6 51 1 2 142 2 0 16 chain 20707 chr9 138394717 + 127285166 127285417 AluSp 311 + 10 276 55487 14 0 7 136 0 8 101 chain 22960 chr9 138394717 + 127413662 127413947 HERVH-int 3825 + 0 291 52426 105 0 4 59 0 2 121 chain 24653 chr9 138394717 + 127458105 127458389 AluYb8 318 + 7 289 49788 56 2 0 226 chain 14759 chr9 138394717 + 127511995 127512211 MER4A1 472 + 0 218 62590 15 21 23 180 chain 41098 chr9 138394717 + 127513351 127513887 MER41A 554 + 0 546 33909 122 0 3 58 7 6 39 0 1 86 3 0 45 0 1 37 0 4 59 1 6 79 chain 31299 chr9 138394717 + 127695370 127695798 LTR3B 427 + 0 427 40897 42 1 4 118 0 1 140 5 2 21 13 7 14 1 0 18 0 5 55 chain 21802 chr9 138394717 + 127737517 127738221 MER83 447 + 0 427 54097 86 375 99 61 24 23 158 chain 12250 chr9 138394717 + 127760450 127760615 L1PA7 6471 + 6316 6469 66368 120 7 0 20 5 0 13 chain 39811 chr9 138394717 + 127848856 127849388 LTR10A 586 + 23 586 34813 36 0 8 7 0 1 26 4 25 15 1 0 61 5 6 73 1 2 303 chain 26808 chr9 138394717 + 127900274 127900589 AluSp 311 + 0 311 46524 14 4 0 297 chain 5059 chr9 138394717 + 127988733 127988809 MER3 215 + 72 138 85352 59 10 0 7 chain 4340 chr9 138394717 + 128006940 128006992 U6 107 + 6 57 89230 24 1 0 27 chain 4457 chr9 138394717 + 128031967 128032017 MSTB 430 + 75 125 88570 50 chain 88554 chr9 138394717 + 128181335 128182354 LTR13 1007 + 0 1007 19930 426 14 0 498 0 2 81 chain 20948 chr9 138394717 + 128290640 128290918 AluSc 308 + 6 285 55197 42 16 17 220 chain 81275 chr9 138394717 + 128518887 128519945 MER11C 1089 + 0 1059 21372 247 0 9 57 0 4 204 49 51 19 6 4 95 0 4 5 1 0 38 0 1 54 16 0 267 chain 3775 chr9 138394717 + 128543916 128543956 U7 62 + 1 41 93021 40 chain 144597 chr9 138394717 + 128779511 128781163 SVA_D 2077 + 28 2076 12722 616 0 1 79 0 3 31 8 5 157 1 38 34 0 1 4 0 1 5 0 51 34 1 3 7 0 303 675 chain 4645 chr9 138394717 + 128814600 128814651 L1MA7 2200 + 1237 1288 87554 51 chain 85467 chr9 138394717 + 128850235 128851238 LTR5B 1012 + 0 1012 20541 101 0 2 524 4 5 99 0 2 14 0 2 6 0 1 222 0 1 33 chain 277094 chr9 138394717 + 128851294 128855692 HERVK-int 6823 + 52 6597 7516 22 1 0 26 7 6 16 1 0 11 2 0 169 1 0 4 0 1 148 1 0 186 269 2444 254 0 3 24 0 14 221 0 1 4 1 0 63 1 0 1490 0 1 4 5 4 260 15 132 165 1 0 23 1 0 62 3 1 37 1 0 34 1 0 124 1 0 43 17 13 7 1 0 4 1 0 38 0 2 36 2 0 6 1 0 12 28 22 13 1 0 17 243 154 11 2 0 32 5 0 9 24 18 10 10 4 8 1 0 8 4 2 29 1 0 4 1 0 13 34 25 17 1 0 4 2 1 7 5 0 7 9 4 11 chain 86144 chr9 138394717 + 128856459 128857457 LTR5B 1012 + 8 1012 20402 93 0 2 808 1 3 60 0 2 36 chain 25309 chr9 138394717 + 128861190 128861532 THE1C 375 + 12 355 48771 113 10 7 49 0 1 44 1 4 125 chain 43797 chr9 138394717 + 129101280 129101834 LTR14 556 + 0 556 32261 190 6 5 4 0 1 123 3 0 61 8 12 58 0 1 101 chain 24555 chr9 138394717 + 129301601 129301887 L1PA4 6152 + 5857 6143 49937 286 chain 3195 chr9 138394717 + 129475193 129475430 MLT1J 494 + 104 351 97941 30 184 193 18 0 1 5 chain 6189 chr9 138394717 + 129495039 129495115 MER115 684 + 561 637 80393 76 chain 33853 chr9 138394717 + 129555686 129556451 MER41A 554 + 0 541 38812 42 0 1 64 2 0 225 63 8 56 0 3 25 249 78 39 chain 4704 chr9 138394717 + 129573851 129573925 MLT1B 390 + 7 82 87241 12 7 8 55 chain 3384 chr9 138394717 + 129606396 129606435 MIR 256 + 72 111 96232 39 chain 8567 chr9 138394717 + 129662225 129662319 SVA_B 1603 + 1501 1595 73525 94 chain 31128 chr9 138394717 + 129786512 129786973 LTR7B 505 + 0 505 41036 95 1 32 37 1 0 44 9 7 18 8 24 73 1 0 89 0 1 17 18 17 20 1 2 29 chain 27995 chr9 138394717 + 129984641 129984986 THE1A 353 + 12 353 44874 96 4 0 245 chain 4422 chr9 138394717 + 129989685 129989757 L1MA8 2339 + 2163 2229 88775 30 11 5 31 chain 11095 chr9 138394717 + 130011621 130011756 MLT1A1 405 + 270 405 68416 135 chain 4866 chr9 138394717 + 130120846 130120907 HY1 111 + 44 108 86341 37 0 3 24 chain 4730 chr9 138394717 + 130161255 130161313 MER103C 291 + 118 176 87080 58 chain 3562 chr9 138394717 + 130306611 130306653 MIRc 230 + 68 110 94728 42 chain 3512 chr9 138394717 + 130411273 130411317 L1MB2 1706 + 1371 1415 95150 44 chain 16045 chr9 138394717 + 130426650 130426879 MER30 238 + 0 238 60965 106 4 16 77 7 4 35 chain 8181 chr9 138394717 + 130624652 130624754 MER30 238 + 133 238 74461 63 0 3 39 chain 20573 chr9 138394717 + 130680359 130680634 AluSc 308 + 0 289 55677 15 0 7 126 18 25 116 chain 31129 chr9 138394717 + 130690805 130691608 MER4A1 472 + 0 472 41034 53 4 0 122 355 5 45 1 22 139 32 34 52 chain 24922 chr9 138394717 + 130709946 130710241 AluY 311 + 6 300 49394 127 1 0 167 chain 52985 chr9 138394717 + 130817151 130817741 LTR10C 591 + 0 591 28581 510 0 1 80 chain 116957 chr9 138394717 + 130909938 130911357 LTR12C 1709 + 0 1709 16064 304 11 10 349 0 119 55 1 0 132 0 41 102 1 0 5 3 1 106 0 4 111 0 29 60 0 102 179 chain 50090 chr9 138394717 + 131005132 131005723 LTR10C 591 + 0 591 29527 34 2 0 476 0 2 79 chain 14429 chr9 138394717 + 131161904 131162117 MER30 238 + 0 238 62994 107 2 0 10 17 43 58 0 1 19 chain 72731 chr9 138394717 + 131211530 131212598 MER11B 1079 + 0 1079 23374 314 1 5 35 3 6 65 12 11 101 0 1 4 6 5 76 5 6 95 27 17 25 1 3 26 0 1 24 5 6 40 1 2 16 3 7 148 7 11 24 0 1 4 chain 88530 chr9 138394717 + 131244595 131245602 LTR13 1007 + 0 1007 19938 304 1 0 77 4 5 621 chain 4979 chr9 138394717 + 131337545 131337670 MLT1C 463 + 45 176 85756 29 54 60 42 chain 73763 chr9 138394717 + 131356718 131357676 LTR5_Hs 974 + 0 974 23150 115 5 13 161 0 1 177 0 1 188 1 0 163 8 15 19 20 18 22 0 2 79 chain 11232 chr9 138394717 + 131357899 131358090 MER87 546 + 59 233 68199 97 3 0 12 24 0 8 7 17 40 chain 48125 chr9 138394717 + 131412937 131413515 LTR10C 591 + 0 591 30251 400 5 8 53 0 10 120 chain 22133 chr9 138394717 + 131547213 131547615 LTR7 482 + 0 477 53653 44 33 71 109 7 39 14 28 29 59 4 5 12 0 2 35 13 14 44 chain 220288 chr9 138394717 + 131547622 131550615 HERVH-int 3825 + 0 3117 9035 333 1 0 63 25 24 26 165 29 10 1 0 30 0 1 4 7 275 431 90 75 130 9 0 44 2 1 18 0 1 111 6 7 168 0 1 394 0 5 80 0 3 86 20 0 122 0 30 535 2 0 80 chain 22191 chr9 138394717 + 131551528 131551928 LTR7 482 + 0 474 53575 50 48 36 15 16 66 57 5 37 46 0 1 52 0 1 4 1 2 52 13 14 41 chain 44898 chr9 138394717 + 131680372 131680884 MER9a2 513 + 0 513 31641 175 0 1 337 chain 260419 chr9 138394717 + 131682160 131685300 HERVK9-int 4720 + 6 4720 7959 17 26 13 13 8 5 4 1 0 65 1 0 9 1 0 30 1 0 65 0 24 127 1 0 658 0 1 172 4 1 286 0 924 32 0 2 696 0 1 271 0 2 469 0 640 79 0 4 104 chain 45009 chr9 138394717 + 131685300 131685811 MER9a2 513 + 0 513 31579 61 0 2 450 chain 3953 chr9 138394717 + 131688530 131688600 MER34C_ 573 + 164 250 91747 32 1 0 7 5 6 12 0 16 13 chain 34910 chr9 138394717 + 131744922 131745361 LTR3A 482 + 25 473 38089 131 9 18 299 chain 4739 chr9 138394717 + 131773763 131773834 MER74A 558 + 484 557 87021 4 1 0 10 3 6 53 chain 150017 chr9 138394717 + 131907196 131908891 SVA_D 2077 + 12 2077 12347 146 0 1 602 40 0 118 0 310 94 0 1 19 0 98 676 chain 65030 chr9 138394717 + 131921427 131922173 L1PA5 6144 + 5386 6135 25184 359 0 3 72 1 0 176 0 1 138 chain 8110 chr9 138394717 + 132047933 132048049 MER85 139 + 0 126 74616 89 1 11 7 1 0 8 1 2 9 chain 2755 chr9 138394717 + 132091428 132091465 L1MB3 1562 + 1384 1419 101932 26 2 0 9 chain 60537 chr9 138394717 + 132100655 132101350 L1PA6 6164 + 5458 6156 26222 30 0 3 665 chain 5323 chr9 138394717 + 132130090 132130149 MLT1B 390 + 103 162 84081 59 chain 42749 chr9 138394717 + 132393256 132393748 MER9a1 513 + 0 513 32917 19 4 25 469 chain 5556 chr9 138394717 + 132421627 132421690 U5 65 + 0 63 83006 63 chain 277009 chr9 138394717 + 132526558 132529519 L1HS 6032 + 3070 6031 7520 2961 chain 6698 chr9 138394717 + 132558285 132558369 L1MB7 1623 + 900 984 78646 84 chain 23212 chr9 138394717 + 132652629 132652966 THE1A 353 + 0 333 52062 77 25 12 22 2 12 136 1 0 74 chain 5659 chr9 138394717 + 132661488 132661553 MER20 218 + 96 161 82516 65 chain 55523 chr9 138394717 + 132718026 132718768 MER4E 760 + 0 724 27709 25 1 0 126 0 9 9 16 10 22 0 5 6 24 0 52 0 1 104 0 2 73 1 0 89 4 1 190 chain 18296 chr9 138394717 + 132764493 132764748 L1MA4 2864 + 29 284 58363 30 1 0 82 7 8 10 1 0 4 0 1 120 chain 10780 chr9 138394717 + 132921521 132921675 L1MB8 1703 + 1435 1588 68898 19 14 13 121 chain 3638 chr9 138394717 + 132931496 132931534 tRNA-Gly-GGA 38 + 0 38 94119 38 chain 25538 chr9 138394717 + 132959107 132959438 THE1C 375 + 0 333 48427 113 0 1 66 0 1 93 1 0 4 0 1 54 chain 4046 chr9 138394717 + 132963732 132963779 U7 62 + 1 48 91108 47 chain 23207 chr9 138394717 + 133017851 133018153 Tigger1 2417 + 878 1182 52071 206 1 3 95 chain 69339 chr9 138394717 + 133025176 133026163 LTR13 1007 + 0 1007 24152 73 6 1 7 0 3 27 13 19 251 8 9 105 1 12 121 2 1 57 5 2 11 8 17 95 6 7 149 0 1 4 0 1 3 4 0 31 chain 78999 chr9 138394717 + 133040777 133041774 LTR13 1007 + 0 1007 21872 71 2 0 10 0 2 298 4 5 138 6 10 160 1 4 6 0 2 240 4 6 23 3 1 31 chain 23360 chr9 138394717 + 133136496 133136787 AluSg7 307 + 3 292 51841 128 0 1 20 1 2 72 0 1 58 5 0 7 chain 24770 chr9 138394717 + 133242736 133243030 AluSc 308 + 8 301 49632 249 1 0 44 chain 38035 chr9 138394717 + 133269163 133269636 LTR15 485 + 0 478 36049 62 0 2 86 0 2 124 0 4 157 1 0 5 2 0 36 chain 52839 chr9 138394717 + 133272409 133273034 PABL_A 660 + 0 660 28629 81 0 9 220 0 3 18 0 23 306 chain 7760 chr9 138394717 + 133295759 133295891 L1PA8 5853 + 5723 5853 75464 11 8 7 11 12 11 90 chain 64247 chr9 138394717 + 133300117 133300846 SVA_B 1603 + 875 1603 25361 102 1 0 13 1 0 147 0 1 465 chain 3777 chr9 138394717 + 133302510 133302556 HY3 101 + 49 95 93009 46 chain 10000 chr9 138394717 + 133302960 133303099 MER51E 476 + 0 150 70425 24 8 9 48 0 10 59 chain 545762 chr9 138394717 + 133310023 133316035 L1PA3long 6157 + 0 6153 985 152 0 1 44 0 1 11 0 9 563 0 128 194 0 1 931 0 1 120 1 0 3721 0 1 275 chain 7968 chr9 138394717 + 133324897 133325185 MLT1B 390 + 108 390 74953 51 3 0 13 11 9 23 58 51 25 72 79 6 1 0 25 chain 60409 chr9 138394717 + 133391149 133391858 SVA_D 2077 + 1352 2077 26262 36 0 1 4 22 20 62 5 1 343 0 1 103 0 20 134 chain 4459 chr9 138394717 + 133537964 133538017 MIRb 242 + 69 122 88562 53 chain 12606 chr9 138394717 + 133735524 133735761 LTR43 600 + 28 250 65789 33 56 43 106 1 0 24 1 0 16 chain 85154 chr9 138394717 + 133744577 133745526 SVA_D 2077 + 601 2077 20594 160 0 40 77 0 437 37 0 49 43 0 1 632 chain 67402 chr9 138394717 + 133923366 133924150 L1PA6 6164 + 5378 6161 24598 211 0 2 495 0 1 66 4 0 8 chain 74079 chr9 138394717 + 133957779 133958741 LTR5_Hs 974 + 0 974 23072 115 5 13 41 1 0 116 0 1 181 0 1 188 1 0 147 1 0 16 8 15 19 20 18 103 chain 123998 chr9 138394717 + 134075175 134076577 SVA_B 1603 + 34 1602 14851 5 0 3 624 0 40 146 1 124 626 chain 4833 chr9 138394717 + 134082270 134082328 L1MB5 1630 + 446 504 86525 58 chain 3234 chr9 138394717 + 134106813 134106851 L1MA4 2864 + 1660 1699 97622 13 0 1 25 chain 3466 chr9 138394717 + 134147415 134147455 MER20 218 + 35 75 95487 40 chain 13357 chr9 138394717 + 134248634 134248794 AluSp 311 + 135 295 64527 160 chain 3547 chr9 138394717 + 134445014 134445051 MSTA-int 1630 + 1587 1624 94875 37 chain 15455 chr9 138394717 + 134500046 134500632 Tigger2 2703 + 2354 2631 61716 13 2 0 87 1 0 22 319 0 18 0 2 40 1 2 9 1 6 23 16 22 26 1 0 7 chain 38198 chr9 138394717 + 134589317 134589739 L1PA3long 6157 + 3245 3667 35907 422 chain 43282 chr9 138394717 + 134631241 134631789 MLT2A2 560 + 0 559 32589 401 0 11 147 chain 30215 chr9 138394717 + 134647907 134648377 MLT2A1 477 + 0 477 41838 48 0 1 90 0 1 22 15 19 165 3 0 38 47 52 22 1 0 19 chain 49176 chr9 138394717 + 134649612 134650192 L1PA7 6471 + 5889 6467 29875 248 1 0 4 0 1 78 2 0 247 chain 32775 chr9 138394717 + 134857573 134857979 L1PA7 6471 + 6063 6470 39691 300 8 0 6 0 8 5 0 1 87 chain 38494 chr9 138394717 + 134859505 134860080 LTR10E 629 + 0 620 35713 15 1 0 76 30 83 122 2 1 27 1 0 52 1 0 155 6 5 12 25 22 50 chain 173827 chr9 138394717 + 134865772 134867650 L1PA2 6032 + 4151 6029 10904 1878 chain 27471 chr9 138394717 + 134877835 134878239 MLT2A1 477 + 0 455 45610 134 6 7 23 5 9 172 8 18 22 4 0 6 3 43 21 chain 230604 chr9 138394717 + 134924023 134927279 HERVL-int 5654 + 2290 5228 8732 1166 0 9 171 0 6 122 0 2 602 0 4 23 10 11 186 320 0 123 2 1 4 0 1 228 7 0 133 19 36 11 30 0 99 chain 42635 chr9 138394717 + 134928027 134928569 MLT2A2 560 + 0 560 32978 278 0 1 127 0 11 73 7 8 18 0 5 39 chain 4193 chr9 138394717 + 134948650 134948764 MER21A 919 + 27 163 90180 30 45 67 5 0 1 28 1 0 5 chain 64092 chr9 138394717 + 134986263 134986989 L1PA5 6144 + 5404 6130 25397 726 chain 10233 chr9 138394717 + 135003331 135003455 MER44A 345 + 107 231 69937 124 chain 20307 chr9 138394717 + 135029057 135029319 LTR71B 605 + 329 605 56010 191 9 23 62 chain 26182 chr9 138394717 + 135071853 135072149 AluY 311 + 8 305 47457 124 0 1 172 chain 45721 chr9 138394717 + 135295695 135296267 LTR71B 605 + 19 605 31201 107 9 23 456 chain 26714 chr9 138394717 + 135381295 135381643 THE1B 368 + 16 368 46667 149 8 7 29 0 1 7 2 6 153 chain 14401 chr9 138394717 + 135420833 135422102 MER41B 635 + 1 627 63033 25 3 0 70 1055 415 116 chain 34510 chr9 138394717 + 135426242 135426677 MER41B 635 + 0 436 38345 127 1 2 307 chain 38849 chr9 138394717 + 135439603 135440120 LTR6B 557 + 16 532 35466 31 1 0 190 2 1 4 0 1 116 0 1 42 3 0 72 19 20 6 0 1 31 chain 28829 chr9 138394717 + 135544477 135544790 AluYa5 310 + 0 310 43582 132 3 0 178 chain 26640 chr9 138394717 + 135597750 135598127 THE1B 368 + 0 368 46770 40 0 5 126 1 0 16 9 5 101 1 0 35 7 1 34 2 0 5 chain 45162 chr9 138394717 + 135625355 135625939 LTR71B 605 + 0 602 31491 95 1 0 4 6 7 27 2 18 260 0 1 56 1 2 132 chain 39626 chr9 138394717 + 135644566 135645131 LTR10B1 532 + 0 532 34941 47 0 7 55 0 3 61 12 3 14 32 0 41 4 2 299 chain 54344 chr9 138394717 + 135646607 135647356 MER4E1 777 + 19 769 28106 160 7 6 279 1 2 72 14 28 59 26 1 18 0 12 113 chain 42824 chr9 138394717 + 135656413 135657294 PABL_B 668 + 0 621 32875 52 0 2 40 319 0 150 0 45 168 4 5 86 6 17 56 chain 45860 chr9 138394717 + 135662290 135662880 PABL_B 668 + 0 638 31130 240 0 45 164 1 2 68 0 2 117 chain 26564 chr9 138394717 + 135669006 135669365 THE1B 368 + 0 368 46882 44 0 15 115 1 0 18 4 0 52 0 1 4 2 1 43 1 0 75 chain 22700 chr9 138394717 + 135675587 135675878 AluSz6 309 + 0 290 52829 8 3 0 11 0 1 90 1 2 178 chain 510087 chr9 138394717 + 135840580 135847837 L1PA7 6471 + 0 6447 2765 11 2 11 126 0 6 80 20 35 142 0 1 236 2 1 318 0 2 37 5 4 221 0 4 604 0 1 121 0 6 28 0 2 283 0 4 92 4 0 115 1 0 17 308 0 58 10 20 165 315 0 144 0 3 18 0 3 506 0 80 44 0 4 138 1 0 318 0 3 189 1 0 128 0 1 278 0 1 338 3 2 70 18 5 204 0 4 94 4 0 30 0 1 102 0 1 142 1 0 9 1 3 10 10 7 26 6 4 132 0 2 42 0 1 140 332 0 92 0 10 51 3 0 167 0 6 14 1 0 25 0 1 4 3 2 97 chain 3092 chr9 138394717 + 136029319 136029353 MER52A 1651 + 886 920 98856 34 chain 20791 chr9 138394717 + 136444626 136444901 AluSp 311 + 22 304 55373 52 0 8 92 23 22 108 chain 23859 chr9 138394717 + 136560369 136560670 MSTA-int 1630 + 1316 1624 51013 200 0 6 27 0 1 74 chain 16664 chr9 138394717 + 136637326 136637562 AluSc 308 + 39 302 60193 69 4 8 95 14 37 54 chain 5710 chr9 138394717 + 136694206 136694279 MER53 195 + 109 180 82290 23 2 0 48 chain 14826 chr9 138394717 + 136698864 136699020 SVA_E 1901 + 1745 1901 62484 156 chain 13227 chr9 138394717 + 136708549 136708719 MER9a3 513 + 341 513 64735 74 0 2 29 2 0 8 0 2 57 chain 19532 chr9 138394717 + 136765870 136766131 MER51B 395 + 135 394 56982 5 1 0 47 1 0 45 1 0 20 0 1 16 3 1 5 0 2 117 chain 79016 chr9 138394717 + 136766306 136767296 LTR13 1007 + 8 1007 21867 60 2 0 23 0 6 7 6 0 277 4 5 313 0 9 188 1 2 109 chain 6752 chr9 138394717 + 136797737 136797817 LTR5B 1012 + 929 1012 78466 27 0 1 46 0 2 7 chain 26172 chr9 138394717 + 136822813 136823106 AluYk4 311 + 7 300 47470 293 chain 3244 chr9 138394717 + 136998661 136998700 MLT1C 463 + 41 80 97534 39 chain 88184 chr9 138394717 + 137004148 137005147 LTR13 1007 + 0 1007 20007 471 0 3 66 0 1 158 2 0 42 0 1 166 0 5 94 chain 27769 chr9 138394717 + 137037576 137037963 MLT2A1 477 + 0 398 45228 17 8 12 111 0 1 28 10 18 21 1 0 77 0 3 97 4 0 13 chain 81416 chr9 138394717 + 137118559 137119561 LTR13 1007 + 0 1007 21354 141 9 13 227 4 5 318 3 1 36 0 1 73 0 1 191 chain 79323 chr9 138394717 + 137121376 137122329 LTR13_ 950 + 0 950 21774 130 0 3 129 0 1 6 0 2 114 1 2 219 11 0 139 0 1 204 chain 24486 chr9 138394717 + 137123108 137123406 AluSx1 309 + 6 306 50054 59 2 4 237 chain 76139 chr9 138394717 + 137288316 137289167 SVA_F 1814 + 683 1814 22529 22 6 46 17 1 194 166 1 49 10 1 0 627 chain 3714 chr9 138394717 + 137294380 137294544 MLT1J 494 + 94 272 93507 30 109 123 25 chain 60982 chr9 138394717 + 137331949 137335361 L1PB3 3668 + 2078 3151 26112 29 32 10 34 0 1 105 0 1 96 6 7 51 560 1 37 1445 8 115 27 26 68 1 0 48 91 94 96 325 5 78 2 0 17 3 0 30 2 0 31 17 20 6 1 0 59 chain 40794 chr9 138394717 + 137332899 137333436 MLT2A2 560 + 0 551 34101 27 0 5 104 0 6 61 0 1 26 1 2 216 6 7 96 chain 17478 chr9 138394717 + 137419096 137419864 LTR49-int 1717 + 123 596 59261 29 23 27 60 1 0 30 72 75 28 7 6 40 316 10 40 58 64 64 chain 3546 chr9 138394717 + 137441978 137442021 MER41D 557 + 485 530 94894 35 0 2 8 chain 90685 chr9 138394717 + 137509764 137510770 LTR13 1007 + 0 1007 19554 448 0 1 558 chain 81033 chr9 138394717 + 137545546 137546506 LTR13 1007 + 47 1007 21432 26 2 0 308 4 5 429 0 1 191 chain 89656 chr9 138394717 + 137558980 137559986 LTR13 1007 + 0 1007 19735 110 1 0 815 0 2 80 chain 8070 chr9 138394717 + 137594944 137595091 Tigger4a 237 + 71 236 74701 48 39 57 60 chain 27371 chr9 138394717 + 137850032 137850451 LTR7B 505 + 0 491 45734 88 4 3 17 0 10 66 35 11 17 0 88 65 1 0 23 0 1 52 14 13 37 chain 38650 chr9 138394717 + 137934600 137935092 L1PBa1 4058 + 1127 1617 35605 181 4 0 247 1 2 37 0 1 22 chain 352159 chr9 138394717 + 137937206 137942951 L1PB1 5432 + 573 5420 5892 455 324 0 201 0 2 144 53 59 111 0 4 35 3 6 256 313 0 50 0 1 114 0 5 41 2 1 170 1 0 24 357 0 199 0 1 40 0 1 396 0 1 99 0 1 152 0 1 52 0 2 66 0 1 265 4 0 196 5 0 6 9 1 211 4 86 102 0 2 41 0 20 12 1 0 98 0 1 31 0 2 107 10 7 175 0 3 75 0 2 242 63 66 88 1 2 9 1 0 24 1 0 9 1 0 11 15 9 6 0 1 40 8 7 15 1 0 45 1 0 15 23 16 15 13 10 9 2 0 24 1 0 21 2 1 12 1 0 16 chain 3291 chr9 138394717 + 137990560 137990609 L1PB1 5432 + 17 60 97096 10 6 0 33 chain 4880 chr9 138394717 + 137992819 137992876 L1PB1 5432 + 2100 2157 86259 57 chain 6377 chr9 138394717 + 137992884 137992971 L1PB1 5432 + 2166 2253 79753 87 chain 44332 chr9 138394717 + 137992973 137993722 L1PB1 5432 + 2254 2838 31930 247 1 0 34 162 4 62 2 0 86 4 0 151 chain 53136 chr9 138394717 + 137993723 137994412 L1PB1 5432 + 2838 3529 28520 125 0 1 218 1 0 95 3 4 95 1 0 10 5 6 38 11 12 87 chain 10484 chr9 138394717 + 137994416 137994543 L1PB1 5432 + 3529 3656 69443 127 chain 115956 chr9 138394717 + 137994552 137996651 L1PB1 5432 + 3657 5430 16242 361 322 0 306 0 1 12 1 2 27 0 1 10 4 3 23 0 1 104 7 12 75 10 14 19 3 0 63 0 9 28 1 5 64 5 10 123 8 5 10 0 1 56 1 0 96 25 19 21 7 6 12 30 24 40 2 1 15 1 0 45 1 0 15 49 45 5 2 0 24 8 7 14 1 0 13 1 0 11 1 0 7 1 0 4 1 0 4 chain 48230 chr9 138394717 + 138214092 138214685 LTR10C 591 + 0 591 30205 15 0 5 489 8 0 60 1 2 20 chain 20430 chr9 138394717 + 138250046 138250329 AluSp 311 + 2 286 55858 51 12 14 166 7 6 47 chain 23720 chr9_KI270717v1_random 40062 + 9972 10319 MLT2A1 477 + 0 385 51249 142 0 1 26 1 5 106 0 25 33 26 34 13 chain 20618 chr9_KI270717v1_random 40062 + 39003 39341 THE1B 368 + 6 368 55611 38 0 15 110 1 0 29 42 52 91 1 4 5 3 0 18 chain 93369 chr9_KI270718v1_random 38054 + 33226 34281 L1P1 4361 + 2436 3499 19134 811 1 9 243 chain 192070 chr9_KI270719v1_random 176845 + 17156 19280 L1PA3long 6157 + 4032 6157 10022 1135 0 1 989 chain 58896 chr9_KI270719v1_random 176845 + 59561 60268 L1PA7 6471 + 5758 6465 26696 707 chain 43180 chr9_KI270719v1_random 176845 + 124394 124888 LTR15 485 + 0 485 32664 343 8 0 138 1 0 4 chain 19776 chr9_KI270719v1_random 176845 + 128036 128271 L1PA3long 6157 + 5865 6101 56706 135 0 1 100 chain 27805 chr9_KI270719v1_random 176845 + 152836 153178 L1PA5 6144 + 5791 6140 45174 189 9 16 144 chain 10365 chr9_KI270719v1_random 176845 + 162455 162574 L1PA6 6164 + 6040 6159 69677 119 chain 129865 chr9_KI270720v1_random 39050 + 33648 35105 L1PA3long 6157 + 4450 5906 14058 675 1 0 781 chain 10599 chr9_KI270720v1_random 39050 + 38876 39024 MER30 238 + 25 197 69230 82 2 21 22 1 0 11 0 6 30 chain 7976 chr1_KI270762v1_alt 354444 + 172057 172174 MER4B 649 + 60 178 74933 52 1 0 4 4 5 26 1 2 29 chain 78277 chr1_KI270762v1_alt 354444 + 176518 177478 HERVL-int 5654 + 3016 3969 22036 164 4 0 113 0 2 533 13 8 133 chain 39879 chr1_KI270766v1_alt 256271 + 7038 7478 LTR7Y 441 + 0 441 34756 323 0 1 117 chain 5637 chr1_KI270766v1_alt 256271 + 55423 55495 MER65A 464 + 286 357 82618 11 1 0 60 chain 67641 chr1_KI270766v1_alt 256271 + 59063 59917 LTR5B 1012 + 0 994 24536 123 0 14 122 0 1 229 1 0 258 0 2 5 7 131 109 chain 4099 chr1_KI270766v1_alt 256271 + 90118 90163 L1MC1 2226 + 1778 1823 90779 45 chain 268765 chr1_KI270766v1_alt 256271 + 130959 134258 L1PA7 6471 + 3147 6454 7742 429 0 3 1103 0 1 32 0 1 820 0 2 5 1 0 78 1 0 109 16 5 402 0 3 82 1 0 4 1 13 215 chain 72404 chr1_KI270766v1_alt 256271 + 150435 151410 LTR5B 1012 + 0 994 23450 88 0 7 33 1 14 269 23 22 56 1 0 96 10 11 112 1 0 4 0 1 281 chain 32926 chr1_KI270766v1_alt 256271 + 151427 152155 HERVK-int 6823 + 1 715 39569 4 1 0 34 55 52 9 1 0 21 1 0 12 2 0 147 0 1 21 12 1 7 0 11 134 1 0 11 68 69 63 86 81 9 1 0 19 1 0 8 chain 79754 chr1_KI270766v1_alt 256271 + 158979 159960 LTR5B 1012 + 0 994 21679 128 1 14 347 1 0 419 0 1 85 chain 6989 chr1_KI270766v1_alt 256271 + 237551 237629 LTR12C 1709 + 1293 1371 77644 78 chain 125100 chr1_KI270760v1_alt 109528 + 89494 91055 THE1A-int 1579 + 0 1573 14683 568 1 0 91 0 1 4 1 0 488 5 17 273 0 1 130 chain 529471 chr1_KI270760v1_alt 109528 + 91299 97052 L1PA2 6032 + 2 6031 1855 119 0 275 432 0 2 2334 1 0 2867 chain 10187 chr1_KI270760v1_alt 109528 + 97090 97223 THE1A 353 + 220 353 70039 8 0 1 5 2 1 118 chain 2944 chr1_KI270765v1_alt 185285 + 32204 32249 MADE1 96 + 50 96 100462 32 1 2 12 chain 39992 chr1_KI270765v1_alt 185285 + 60466 60893 L1HS 6032 + 5605 6032 34665 427 chain 33067 chr1_KI270765v1_alt 185285 + 76434 77239 MER51D 577 + 107 569 39458 23 0 5 9 2 1 216 336 0 36 7 0 102 1 0 8 3 1 28 2 1 32 chain 28303 chr1_KI270765v1_alt 185285 + 92435 92798 THE1B 368 + 0 368 44405 27 0 1 9 0 5 120 3 2 204 chain 14643 chr1_KI270765v1_alt 185285 + 99012 99197 AluSp 311 + 117 300 62742 15 2 0 168 chain 102608 chr1_KI270765v1_alt 185285 + 116745 117988 L1PA6 6164 + 4902 6146 17993 141 1 0 275 0 4 75 0 1 296 5 1 89 0 1 361 chain 4395 chr1_GL383518v1_alt 182439 + 102522 102578 LTR38B 592 + 509 564 88914 35 1 0 20 chain 22210 chr1_GL383518v1_alt 182439 + 147847 148203 L1PA8 5853 + 5507 5853 53537 8 1 0 29 5 4 18 1 0 42 2 0 54 1 0 17 32 30 31 2 1 19 1 0 93 chain 6451 chr1_GL383518v1_alt 182439 + 149825 149904 FAM 185 + 64 143 79510 79 chain 9575 chr1_GL383518v1_alt 182439 + 152723 152841 Tigger1 2417 + 2298 2416 71318 118 chain 32949 chr1_GL383518v1_alt 182439 + 161265 161625 L1PA2 6032 + 5671 6031 39550 360 chain 20076 chr1_GL383518v1_alt 182439 + 165382 165645 AluSg7 307 + 10 274 56283 108 9 8 136 0 2 10 chain 23676 chr1_GL383519v1_alt 110268 + 96244 96530 AluSc 308 + 6 292 51313 286 chain 51489 chr1_GL383520v2_alt 366580 + 34585 35311 LTR12 884 + 0 869 29050 24 1 0 7 4 5 4 1 0 49 25 0 26 0 25 47 0 157 34 2 0 210 6 0 92 11 5 66 6 7 111 chain 68712 chr1_GL383520v2_alt 366580 + 83674 84449 L1PA4 6152 + 5102 5877 24280 775 chain 6682 chr1_GL383520v2_alt 366580 + 312306 312387 MER2 342 + 134 215 78696 81 chain 28855 chr1_KI270764v1_alt 50258 + 13518 13890 THE1B 368 + 0 368 43547 172 2 1 19 2 0 102 1 0 74 chain 395817 chr1_KI270764v1_alt 50258 + 25300 31126 L1PB1 5432 + 11 5418 5221 11 6 0 229 5 0 14 1 0 138 22 11 35 19 22 73 4 3 6 0 1 173 0 1 34 21 17 50 5 8 223 6 7 162 0 2 173 13 18 324 0 4 17 3 0 77 0 4 127 1 0 45 381 0 40 1 2 175 16 18 52 1 0 187 7 0 184 3 0 164 3 0 107 0 1 56 1 2 6 1 0 45 18 23 101 0 2 208 0 6 215 0 1 111 6 1 34 0 3 207 0 4 575 1 0 9 11 12 55 3 0 170 1 0 108 19 9 138 1 0 43 9 19 25 1 0 8 1 0 10 24 19 32 0 1 5 2 0 7 3 2 14 1 0 45 1 0 15 24 12 19 2 0 5 9 8 6 2 0 23 2 1 21 1 0 13 1 0 14 chain 23204 chr1_KI270764v1_alt 50258 + 48847 49178 THE1B 368 + 1 354 52076 43 6 21 101 10 9 131 5 13 35 chain 38985 chr1_KI270763v1_alt 911658 + 5270 5927 LTR9B 643 + 0 643 35365 133 0 2 65 4 9 5 0 2 172 11 12 29 67 41 32 12 1 14 3 17 57 13 12 40 chain 57177 chr1_KI270763v1_alt 911658 + 7211 8279 MER4E1 777 + 0 772 27204 17 7 0 24 1 0 155 7 5 4 1 0 127 309 0 158 3 25 28 6 4 9 0 4 212 chain 87430 chr1_KI270763v1_alt 911658 + 89360 90412 MER11B 1079 + 0 1064 20148 316 1 18 49 0 1 388 8 2 290 chain 25511 chr1_KI270763v1_alt 911658 + 118130 118484 THE1B 368 + 0 368 48468 44 7 22 106 10 9 66 0 1 46 1 0 74 chain 6977 chr1_KI270763v1_alt 911658 + 158155 158258 L1PB1 5432 + 5178 5279 77677 41 4 3 14 1 0 43 chain 61873 chr1_KI270763v1_alt 911658 + 163447 164330 Tigger1 2417 + 537 1445 25894 16 8 12 92 0 1 73 0 2 79 0 7 127 15 16 66 8 11 83 1 0 102 9 13 62 1 0 100 0 5 41 chain 3448 chr1_KI270763v1_alt 911658 + 197118 197158 MADE1 96 + 2 42 95668 40 chain 85324 chr1_KI270763v1_alt 911658 + 227042 228116 MER11B 1079 + 0 1079 20563 175 2 1 49 0 5 86 1 18 407 10 0 25 5 7 169 0 2 89 0 1 21 11 0 24 chain 6826 chr1_KI270763v1_alt 911658 + 361503 361585 MER58A 224 + 130 212 78218 82 chain 23330 chr1_KI270763v1_alt 911658 + 490800 491089 AluSc 308 + 16 304 51878 109 2 1 178 chain 38486 chr1_KI270763v1_alt 911658 + 542410 542937 L1PREC2 3366 + 849 1385 35724 259 0 1 134 15 16 47 0 3 18 8 12 46 chain 20380 chr1_KI270763v1_alt 911658 + 558076 558374 THE1B 368 + 2 306 55911 167 1 0 21 18 27 14 1 0 11 2 1 63 chain 66820 chr1_KI270763v1_alt 911658 + 588186 589051 L1PA10 4194 + 3278 4150 24740 431 0 3 80 0 8 282 1 0 32 8 5 31 chain 17142 chr1_KI270763v1_alt 911658 + 619849 620156 THE1C 375 + 14 335 59648 49 0 2 13 76 84 19 0 1 21 0 3 129 chain 103897 chr1_KI270763v1_alt 911658 + 663988 665625 L1P2 5180 + 1694 3665 17828 154 295 0 112 6 31 124 0 4 200 14 0 224 0 614 13 2 1 12 4 0 81 0 5 396 chain 6307 chr1_KI270763v1_alt 911658 + 671160 671260 L1MB1 2102 + 1879 1977 79971 55 12 10 33 chain 197037 chr1_KI270763v1_alt 911658 + 671975 674823 L1PA3long 6157 + 3308 6156 9807 451 7 0 595 0 4 478 0 3 1317 chain 49884 chr1_KI270763v1_alt 911658 + 697780 698353 L1PA7 6471 + 4375 4949 29608 199 1 2 373 chain 125951 chr1_KI270763v1_alt 911658 + 783877 785299 L1PA5 6144 + 4713 6138 14566 584 0 4 12 4 3 656 1 0 4 0 1 161 chain 535417 chr1_KI270763v1_alt 911658 + 819162 825291 L1PA5 6144 + 0 6139 1598 951 0 1 74 0 2 722 1 0 563 1 0 618 0 1 112 0 8 63 2 1 566 1 0 161 0 1 23 0 1 12 0 2 467 0 4 88 1 0 1070 0 3 296 1 2 106 9 0 221 chain 283336 chr1_KI270763v1_alt 911658 + 832356 836095 L1PA10 4194 + 387 4161 7332 8 10 0 8 1 0 85 16 13 40 0 2 5 2 0 11 19 23 154 0 1 114 0 18 276 26 25 32 0 1 81 0 4 53 14 10 40 0 3 6 3 0 32 0 1 437 0 3 349 0 4 404 8 6 36 0 12 8 13 1 221 0 1 231 0 1 181 0 1 110 4 8 157 6 10 35 0 1 256 0 13 197 4 1 11 1 0 22 1 0 11 chain 15416 chr1_KI270763v1_alt 911658 + 852397 852610 L1PA8 5853 + 5637 5853 61764 42 1 0 43 0 6 12 2 1 15 6 5 92 chain 21923 chr1_KI270759v1_alt 425601 + 0 269 AluY 311 + 40 311 53939 92 0 1 88 1 2 88 chain 34963 chr1_KI270759v1_alt 425601 + 16261 16691 L1PA8 5853 + 5430 5853 38045 134 1 0 36 1 0 8 2 0 74 1 0 58 2 1 19 1 0 93 chain 63225 chr1_KI270759v1_alt 425601 + 224057 224875 L1MA3 4352 + 3157 3968 25576 221 5 3 107 4 0 41 1 0 439 chain 28794 chr1_KI270759v1_alt 425601 + 280905 281213 AluYb8 318 + 0 305 43645 123 3 0 182 chain 245810 chr1_KI270759v1_alt 425601 + 321633 325051 L1PA8 5853 + 2518 5852 8332 102 0 18 60 0 1 132 0 4 108 3 2 22 0 1 426 253 106 15 0 13 10 0 2 102 0 1 10 0 8 78 0 4 271 0 2 111 0 2 144 0 1 36 8 9 97 1 0 213 0 3 189 1 0 163 0 4 16 4 10 70 0 2 478 1 0 46 7 5 64 1 0 14 9 8 39 2 1 19 41 40 52 chain 12108 chr1_KI270759v1_alt 425601 + 345946 346207 MER1B 344 + 63 332 66649 18 56 60 13 8 9 99 16 19 51 chain 3215 chr1_KI270759v1_alt 425601 + 367915 367951 L1PB3 3668 + 3530 3566 97756 36 chain 6566 chr1_KI270759v1_alt 425601 + 412798 412873 L1P3 4156 + 18 93 79093 75 chain 88184 chr1_KI270759v1_alt 425601 + 424426 425601 L1PA10 4194 + 1833 2995 20008 75 19 0 257 1 2 300 0 3 140 10 2 5 0 2 4 1 0 17 5 7 16 0 3 5 0 4 320 chain 96027 chr1_KI270761v1_alt 165834 + 44406 45566 L1PA7 6471 + 5163 6322 18774 458 1 0 510 2 0 6 0 2 183 chain 5448 chr1_KI270761v1_alt 165834 + 77576 77640 MER51C 639 + 0 64 83470 64 chain 12747 chr1_KI270761v1_alt 165834 + 118858 119121 L1PB1 5432 + 5179 5422 65530 41 2 1 16 1 0 44 1 0 15 1 0 4 2 0 8 8 0 18 9 6 14 2 0 26 8 9 11 2 1 11 1 0 18 chain 34307 chr2_KI270770v1_alt 136240 + 5275 5742 LTR2 463 + 0 463 38491 55 0 3 69 0 3 80 33 23 230 chain 21091 chr2_KI270770v1_alt 136240 + 30237 30463 L1PA2 6032 + 5804 6030 55016 226 chain 548533 chr2_KI270770v1_alt 136240 + 75484 81499 L1PA3long 6157 + 0 6152 837 152 0 1 624 1 129 2324 0 4 1591 0 1 576 0 3 747 chain 221145 chr2_KI270770v1_alt 136240 + 113821 116603 L1PA8A 6298 + 3468 6290 9006 298 1 2 26 0 1 76 0 1 132 0 1 11 0 1 147 12 8 15 0 2 153 0 1 100 0 10 17 6 8 26 1 0 350 2 5 209 0 1 108 0 5 301 12 10 70 0 1 10 1 0 521 1 2 57 1 18 118 chain 22416 chr2_KI270774v1_alt 223625 + 124929 125267 THE1B 368 + 0 368 53247 8 0 1 27 3 19 121 1 0 93 13 19 15 2 0 6 10 20 39 chain 21985 chr2_KI270769v1_alt 120616 + 15663 15925 AluY 311 + 40 309 53854 92 0 1 65 3 9 102 chain 567177 chr2_GL383521v1_alt 143390 + 20194 26228 L1HS 6032 + 1 6032 35 73 0 1 601 4 0 5356 chain 293268 chr2_GL383521v1_alt 143390 + 53370 56919 L1P2 5180 + 30 3561 7032 33 1 2 84 1 0 45 1 0 53 1 0 213 2 1 46 15 14 51 20 12 203 1 0 6 1 0 307 0 1 348 0 1 594 0 1 260 21 14 858 2 0 6 1 0 321 0 3 54 chain 31669 chr2_GL383521v1_alt 143390 + 88316 88713 THE1B-int 1605 + 1192 1605 40609 180 11 10 31 0 15 167 0 2 8 chain 501514 chr2_KI270772v1_alt 133041 + 46019 51925 L1PA4 6152 + 1 5972 3077 116 13 26 53 0 4 380 1 0 460 0 5 2125 0 1 1794 0 26 709 0 17 255 chain 29609 chr2_KI270772v1_alt 133041 + 83240 83569 L1PA5 6144 + 5796 6125 42469 329 chain 33452 chr2_KI270775v1_alt 138019 + 6081 6569 MER9a3 513 + 1 513 39128 17 0 2 90 0 1 68 13 14 19 12 22 22 1 0 38 1 11 125 6 7 76 chain 45417 chr2_KI270775v1_alt 138019 + 46640 47209 L1PA7 6471 + 5900 6469 31353 236 2 3 174 0 9 7 9 0 56 2 1 83 chain 9759 chr2_KI270775v1_alt 138019 + 93013 93134 MSTA-int 1630 + 1484 1611 70912 24 0 6 97 chain 42368 chr2_KI270775v1_alt 138019 + 108772 109354 L1PA8 5853 + 5265 5841 33148 149 0 4 146 1 0 44 4 2 65 5 4 13 10 6 42 2 1 19 4 3 78 chain 25079 chr2_KI270775v1_alt 138019 + 125992 126364 LTR8 732 + 222 625 49150 19 0 2 69 9 36 156 0 5 18 21 18 80 chain 305279 chr2_KI270775v1_alt 138019 + 133558 136978 L1PA4 6152 + 2720 6151 6717 58 1 8 2520 0 4 841 chain 42668 chr2_KI270771v1_alt 110395 + 11920 12487 L1PA8 5853 + 5290 5850 32962 274 1 0 44 2 0 73 1 0 11 1 0 48 2 1 19 1 0 90 chain 4591 chr2_KI270771v1_alt 110395 + 20398 20452 THE1D-int 1627 + 449 503 87838 54 chain 102592 chr2_KI270771v1_alt 110395 + 34605 35761 L1PA4 6152 + 4987 6143 17995 1156 chain 126241 chr2_KI270771v1_alt 110395 + 56658 58059 L1PA3long 6157 + 4752 6152 14517 1310 1 0 90 chain 83357 chr2_KI270768v1_alt 110099 + 24163 25186 LTR5A 1029 + 0 1029 20952 74 0 6 70 1 0 621 2 1 47 1 2 163 11 12 33 chain 5470 chr2_KI270768v1_alt 110099 + 81547 81645 L1MA3 4352 + 4240 4332 83348 14 6 4 24 1 0 6 1 0 29 1 0 11 1 0 4 chain 42313 chr2_KI270768v1_alt 110099 + 89975 90467 LTR15 485 + 0 485 33181 343 8 0 118 0 2 18 1 0 4 chain 22357 chr2_GL582966v2_alt 96131 + 36037 36305 AluSp 311 + 28 296 53336 268 chain 368196 chr2_GL383522v1_alt 123821 + 36912 41019 L1PA4 6152 + 2019 6152 5695 474 0 32 659 0 1 940 0 1 665 4 0 701 2 0 655 2 0 5 chain 522199 chr2_GL383522v1_alt 123821 + 51849 57672 L1PA4 6152 + 3 5827 2171 1158 0 3 56 1 0 16 1 0 213 1 0 1734 1 0 1282 0 1 910 1 2 449 chain 55051 chr2_KI270776v1_alt 174166 + 2580 3324 MER4E 760 + 0 752 27853 21 1 2 128 22 25 110 1 5 103 2 0 220 7 6 81 0 1 35 1 3 12 chain 82301 chr2_KI270776v1_alt 174166 + 3332 4836 MER4-int 2692 + 1547 2688 21176 103 5 4 26 12 7 95 1 0 99 14 16 242 1 2 45 0 1 85 369 10 5 2 0 23 0 1 4 1 0 100 1 4 47 2 1 30 4 5 23 0 1 135 8 0 11 0 2 6 0 3 5 chain 32656 chr2_KI270776v1_alt 174166 + 40664 41016 L1PA3long 6157 + 5805 6157 39799 352 chain 61445 chr2_KI270776v1_alt 174166 + 41298 41996 L1PA5 6144 + 5442 6140 25999 698 chain 12225 chr2_KI270776v1_alt 174166 + 44108 44322 L1PA8 5853 + 5637 5853 66427 45 1 0 5 20 15 41 1 0 13 6 5 60 0 9 6 1 2 15 chain 194151 chr2_KI270776v1_alt 174166 + 129275 132084 L1PREC2 3366 + 144 2963 9918 20 19 16 20 5 9 23 1 0 13 1 0 10 1 0 5 1 0 21 15 15 103 1 0 279 6 8 160 1 0 413 2 0 5 16 18 17 1 0 11 5 8 20 0 8 133 12 24 97 21 41 129 0 1 126 0 1 141 0 2 28 0 1 474 2 1 47 1 0 148 5 0 7 19 15 44 1 0 44 1 0 4 3 0 13 29 21 17 6 1 14 21 19 12 4 1 11 chain 18625 chr2_KI270776v1_alt 174166 + 133255 133529 L1PA8 5853 + 5588 5847 57973 20 2 0 70 2 1 14 3 2 43 1 0 22 1 0 37 10 1 49 chain 4188 chr2_KI270776v1_alt 174166 + 168592 168643 MER4A1 472 + 404 455 90216 51 chain 18778 chr2_KI270767v1_alt 161578 + 10971 11272 THE1B 368 + 0 306 57810 68 1 2 43 0 1 42 1 0 13 10 9 20 0 3 8 1 5 10 8 7 11 2 1 63 chain 15373 chr2_KI270767v1_alt 161578 + 16863 17082 MER30 238 + 0 236 61825 103 10 0 7 7 36 40 2 0 50 chain 6119 chr2_KI270767v1_alt 161578 + 29959 30394 MSTA 426 + 0 405 80660 16 50 51 27 258 226 45 17 18 22 chain 3406 chr3_JH636055v2_alt 173151 + 7273 7312 MLT1N2 510 + 471 510 96018 39 chain 100448 chr3_JH636055v2_alt 173151 + 38875 40001 L1PA5 6144 + 5011 6142 18242 732 0 1 68 0 1 98 0 1 40 0 1 48 0 1 140 chain 30215 chr3_JH636055v2_alt 173151 + 40842 41345 L1PA15 4387 + 3873 4356 41837 17 4 2 21 1 0 19 1 0 121 0 3 7 3 0 41 1 0 26 10 9 46 1 0 22 16 13 47 6 3 46 2 0 11 6 1 28 chain 222014 chr3_JH636055v2_alt 173151 + 91625 94247 L1PA5 6144 + 3536 6144 8982 141 4 0 94 1 0 251 0 1 149 18 0 713 0 1 24 2 3 380 1 5 38 0 1 73 0 1 733 chain 524931 chr3_JH636055v2_alt 173151 + 120289 126428 L1PA6 6164 + 1 6162 2053 209 1 2 242 7 11 45 1 2 55 1 0 746 0 5 1012 5 6 346 1 0 500 6 8 186 0 1 102 1 4 889 0 2 557 1 2 253 0 1 130 1 5 834 2 0 6 chain 77736 chr3_KI270783v1_alt 109187 + 4512 5591 MER11A 1151 + 0 1151 22155 40 1 0 15 0 99 76 1 0 27 1 0 37 4 0 32 0 2 115 0 1 93 1 2 145 5 6 144 19 0 5 1 0 8 8 15 22 18 0 36 0 1 60 6 7 78 5 9 76 chain 26288 chr3_KI270783v1_alt 109187 + 38431 38726 AluYk4 311 + 8 304 47290 20 0 1 275 chain 6840 chr3_KI270783v1_alt 109187 + 55882 56147 LTR37A 408 + 65 340 78170 19 159 170 8 1 0 78 chain 16192 chr3_KI270780v1_alt 224108 + 6704 6996 LTR12C 1709 + 783 1037 60758 54 0 39 136 77 0 25 chain 2980 chr3_KI270780v1_alt 224108 + 6936 6971 LTR12C 1709 + 657 693 85116 14 0 1 21 chain 340173 chr3_KI270780v1_alt 224108 + 29342 33392 HERVE-int 4064 + 0 4064 6065 83 0 1 440 0 1 79 0 1 152 71 73 703 1 2 676 3 0 786 2 0 115 44 44 35 0 4 202 0 10 70 1 0 587 chain 354457 chr3_KI270780v1_alt 224108 + 51567 55629 HERVE-int 4064 + 0 4064 5863 811 3 0 722 1 2 676 3 0 786 2 0 400 0 10 70 1 0 587 chain 84261 chr3_KI270780v1_alt 224108 + 64934 65950 LTR5A 1029 + 0 1029 20755 134 0 13 882 chain 344620 chr3_KI270780v1_alt 224108 + 74199 78251 HERVE-int 4064 + 0 4064 5991 604 0 1 208 4 1 719 1 2 676 15 12 552 1 3 413 0 4 202 0 10 70 1 0 127 1 2 458 chain 83223 chr3_KI270780v1_alt 224108 + 87515 88543 LTR5A 1029 + 0 1029 20980 147 6 5 69 0 2 806 chain 4589 chr3_KI270780v1_alt 224108 + 130781 130832 MADE1 96 + 45 96 87848 51 chain 98352 chr3_KI270780v1_alt 224108 + 142050 143809 L1PB1 5432 + 3617 5104 18503 77 1 9 23 1 6 76 0 3 151 5 7 24 3 5 124 0 1 46 1 0 36 0 2 157 0 1 15 0 1 178 4 6 41 1 5 17 1 2 141 350 46 24 11 12 156 2 0 5 0 2 8 3 0 5 10 13 62 chain 9182 chr3_KI270780v1_alt 224108 + 163969 164100 LTR2 463 + 241 355 72159 41 17 0 73 chain 43262 chr3_KI270780v1_alt 224108 + 172245 172795 LTR6B 557 + 0 557 32600 220 2 0 143 0 5 130 0 4 55 chain 187176 chr3_KI270780v1_alt 224108 + 174209 178064 HERVS71-int 4705 + 647 4171 10246 8 1 0 5 4 0 12 7 4 5 1 0 17 1 0 4 1 0 18 124 67 21 4 0 154 9 3 282 0 1 354 1 0 374 25 25 119 1 0 182 75 44 15 35 23 16 1 0 8 7 4 11 4 1 7 1 0 7 1 0 4 10 6 11 33 21 8 1 0 6 1 0 11 14 10 42 1 0 9 0 9 32 2 1 17 48 45 17 3 1 9 1 0 29 15 9 11 1 0 15 76 61 6 1 0 7 2 0 9 4 2 21 10 8 35 2 0 10 1 0 7 4 3 13 14 5 22 1 0 20 1 0 4 2 1 6 1 0 19 66 50 14 38 25 9 1 0 11 4 0 41 1 0 12 16 13 15 8 5 11 22 20 8 3 0 6 1 0 12 15 9 19 30 22 29 35 29 16 1 0 17 2 0 57 25 20 7 1 0 20 13 12 28 6 3 52 1 0 3 1 0 21 1 0 30 1 0 13 2 0 6 1 0 12 11 8 5 2 0 5 1 0 29 1 0 7 1 0 4 8 5 25 12 8 20 1 0 7 2 0 36 3 0 23 1 0 16 1 0 3 1 0 4 1 0 26 6 4 10 1 0 21 1 0 39 2 1 11 3 1 14 27 22 42 1 0 8 1 0 8 2 1 12 2 0 20 2 0 7 2 0 22 chain 47801 chr3_KI270780v1_alt 224108 + 179107 179665 LTR6B 557 + 0 557 30361 435 1 0 122 chain 458267 chr3_KI270780v1_alt 224108 + 190116 195457 L1PA4 6152 + 0 5337 4171 773 0 1 196 2 1 84 1 0 187 28 8 172 0 5 101 2 1 485 0 1 767 0 4 245 0 1 925 0 2 389 0 4 131 0 2 180 1 0 672 chain 301879 chr3_KI270780v1_alt 224108 + 204402 208151 HERVH-int 3825 + 0 3825 6781 123 0 1 209 1 0 142 1 56 39 2 1 9 1 0 12 8 4 8 3 0 14 1 0 12 2 40 27 1 0 20 126 0 39 0 1 22 1 0 82 16 19 218 0 2 764 0 8 189 4 0 25 8 13 303 1 49 233 0 58 1083 chain 27874 chr3_KI270780v1_alt 224108 + 209401 209794 LTR7 482 + 1 473 45073 68 8 46 109 0 1 27 3 0 11 1 32 12 0 1 4 1 12 149 chain 37182 chr3_KI270780v1_alt 224108 + 210424 210838 L1PA2 6032 + 5616 6032 36623 400 0 2 14 chain 3413 chr3_GL383526v1_alt 180671 + 5346 5405 L1MA4 2864 + 2747 2804 95972 20 8 6 31 chain 166698 chr3_GL383526v1_alt 180671 + 23619 25466 L1PA4 6152 + 4283 6151 11293 196 0 17 169 1 0 635 0 5 846 chain 3566 chr3_GL383526v1_alt 180671 + 40180 40248 MADE1 96 - 12 96 94684 26 5 21 37 chain 11264 chr3_GL383526v1_alt 180671 + 60559 60939 MLT2D 439 + 0 372 68145 19 4 6 65 7 5 47 127 124 30 44 45 18 6 0 13 chain 134192 chr3_GL383526v1_alt 180671 + 76147 77796 LTR12C 1709 + 0 1709 13631 436 0 1 266 41 0 65 2 1 68 1 0 89 1 0 186 1 0 5 3 1 106 0 4 168 0 102 211 chain 2765 chr3_GL383526v1_alt 180671 + 76849 76890 LTR12C 1709 + 822 862 43237 15 1 0 25 chain 18225 chr3_GL383526v1_alt 180671 + 100765 101011 AluY 311 + 29 269 58433 104 25 19 117 chain 38095 chr3_GL383526v1_alt 180671 + 122431 122954 MER9a3 513 + 0 508 35995 18 0 2 93 0 2 141 1 0 95 29 0 14 0 10 58 1 2 73 chain 363615 chr3_GL383526v1_alt 180671 + 123616 127896 HERVK9-int 4720 + 334 4626 5756 2050 0 3 315 2 1 407 0 10 27 0 1 436 1 0 748 0 1 33 1 0 260 chain 94431 chr3_GL383526v1_alt 180671 + 151419 152533 L1P1 4361 + 2156 3281 18974 612 15 27 382 1 0 104 chain 20559 chr3_KI270777v1_alt 173649 + 47021 47267 AluY 311 + 40 290 55695 76 0 3 7 0 1 163 chain 90600 chr3_KI270777v1_alt 173649 + 64514 65507 L1PA2 6032 + 5037 6030 19577 829 5 0 7 0 5 152 chain 59589 chr3_KI270777v1_alt 173649 + 71861 73695 L1M1 2793 + 237 1552 26487 14 15 12 34 1 0 11 270 185 6 1 0 11 1 0 10 12 9 4 1 0 9 2 1 11 10 7 9 1 0 8 157 83 41 37 29 9 2 0 4 2 0 21 3 1 6 2 0 30 7 6 23 2 0 8 1 0 54 14 12 97 3 0 5 0 2 29 0 1 100 1 2 5 314 0 32 1 0 72 4 0 19 4 0 9 3 0 83 1 2 27 0 1 117 1 2 5 1 0 37 chain 177165 chr3_KI270777v1_alt 173649 + 75734 82161 L1MA1 4479 + 230 4185 10718 46 2 0 367 0 1 91 1 0 6 10 11 43 4 0 18 1 6 29 0 5 27 0 21 32 11 19 233 35 36 15 10 5 27 15 16 133 30 30 161 0 12 27 0 1 96 0 3 81 0 3 128 3649 1197 95 1 0 12 4 0 125 3 0 48 36 0 76 1 2 200 1 0 24 3 1 16 1 0 74 1 0 16 2 0 14 1 0 87 1 0 6 3 0 125 12 10 14 8 6 35 1 0 9 1 0 11 4 1 9 6 0 13 chain 159227 chr3_KI270777v1_alt 173649 + 78628 80404 L1PA4 6152 + 3734 5518 11795 162 0 1 454 0 4 396 0 3 764 chain 24819 chr3_KI270777v1_alt 173649 + 167832 168201 THE1D 372 + 0 372 49556 7 8 0 54 3 13 92 25 27 147 1 0 32 chain 14805 chr3_KI270778v1_alt 248252 + 49182 49388 THE1B 368 + 150 342 62524 45 7 0 54 7 0 93 chain 272550 chr3_KI270778v1_alt 248252 + 57164 68878 L1PA3long 6157 + 2956 6149 7640 209 0 1 5 1 0 1152 319 0 652 8202 0 1174 chain 19572 chr3_KI270778v1_alt 248252 + 60218 60439 L1PA3long 6157 + 5683 5905 56929 140 0 1 81 chain 54494 chr3_KI270778v1_alt 248252 + 82760 83997 L1PA7 6471 + 5183 6459 28045 319 0 35 77 8 7 15 14 17 56 0 1 428 0 1 158 2 1 5 0 1 155 chain 47528 chr3_KI270778v1_alt 248252 + 101208 101808 L1P3 4156 + 3170 3781 30467 317 0 1 58 0 4 88 11 17 126 chain 80592 chr3_KI270778v1_alt 248252 + 127873 128995 LTR12C 1709 + 0 1709 21515 214 0 2 37 26 0 14 1 26 45 0 43 227 1 2 65 11 446 103 0 4 35 0 2 181 55 26 4 1 0 39 1 132 62 chain 28413 chr3_KI270778v1_alt 248252 + 163772 164070 AluYd8 298 + 0 298 44248 298 chain 445301 chr3_KI270778v1_alt 248252 + 214392 220935 L1PA8A 6298 + 79 6290 4467 40 67 71 14 10 5 12 5 4 4 1 0 6 1 0 8 1 0 14 4 0 8 1 0 42 2 1 11 15 9 79 13 15 10 51 10 26 1 0 138 2 0 24 0 4 386 0 1 90 15 0 11 1 4 11 2 0 85 1 2 52 14 6 398 1 0 332 6 0 7 1 8 168 0 1 44 1 0 8 4 5 135 0 2 67 0 1 5 7 6 9 0 8 99 20 29 609 0 1 4 2 1 76 1 4 51 0 1 12 307 13 4 0 1 14 1 0 51 0 2 140 27 22 18 0 1 4 1 0 59 3 0 163 6 7 603 0 2 314 0 1 31 5 6 12 20 22 299 3 4 104 1 3 70 19 24 107 4 5 62 0 5 21 2 4 102 0 1 144 12 7 465 chain 70243 chr3_KI270778v1_alt 248252 + 222716 223619 L1PA7 6471 + 5338 6254 23940 42 0 5 201 24 19 9 0 3 225 4 5 175 0 8 14 0 1 209 chain 9301 chr3_KI270781v1_alt 113034 + 3288 3390 L1PA5 6144 + 6042 6144 71908 102 chain 14423 chr3_KI270781v1_alt 113034 + 38481 38669 MER89 557 + 367 555 63002 12 0 1 21 1 0 43 0 1 4 1 0 106 chain 51860 chr3_KI270781v1_alt 113034 + 45116 47326 L1PA16 3655 + 2293 3619 28919 50 0 1 330 1 0 69 42 2 19 0 32 31 1420 565 186 38 18 7 1 0 16 chain 29122 chr3_KI270781v1_alt 113034 + 75138 75483 THE1B 368 + 24 368 43158 148 1 0 196 chain 67505 chr3_KI270781v1_alt 113034 + 104482 105311 L1PA8 5853 + 5030 5853 24566 364 8 9 158 2 1 48 2 0 69 2 1 10 1 0 50 2 1 19 1 0 93 chain 86188 chr3_KI270779v1_alt 205312 + 24017 25005 LTR13 1007 + 18 1007 20391 345 0 14 52 15 1 429 0 1 147 chain 34194 chr3_KI270779v1_alt 205312 + 50033 50495 MER9a3 513 + 7 513 38571 11 0 2 54 0 1 104 4 5 90 3 21 13 8 29 97 0 1 78 chain 18189 chr3_KI270779v1_alt 205312 + 66880 67120 L1PA7 6471 + 5253 5494 58473 30 7 8 203 chain 3482 chr3_KI270779v1_alt 205312 + 97324 97369 MIR3 191 + 75 120 95369 45 chain 114449 chr3_KI270779v1_alt 205312 + 169434 170954 L1PA8 5853 + 4306 5853 16482 6 0 6 94 6 13 443 0 1 50 0 2 66 0 4 18 2 0 513 1 0 42 1 0 44 2 0 73 1 0 7 10 12 16 32 44 93 chain 25217 chr3_KI270782v1_alt 162429 + 16065 16361 AluSp 311 + 4 301 48915 140 0 1 156 chain 85241 chr3_KI270784v1_alt 184404 + 34819 35882 MER11C 1089 + 0 1089 20581 220 0 5 39 12 15 40 1 18 49 0 1 199 12 13 477 1 0 13 chain 171400 chr3_KI270784v1_alt 184404 + 103014 105640 L1PA7 6471 + 4102 6455 11026 385 0 1 54 2 0 5 1 3 148 1 2 149 1 0 8 7 8 33 27 23 42 1 0 4 1 0 4 0 3 329 2 1 198 0 2 49 3 7 64 0 2 290 0 25 60 0 2 5 1 2 112 7 25 59 327 1 106 0 1 141 chain 4534 chr3_KI270784v1_alt 184404 + 183217 183273 MSTA 426 + 40 96 88141 56 chain 35128 chr4_KI270790v1_alt 220246 + 73515 73897 L1PA2 6032 + 5650 6032 37940 382 chain 3589 chr4_KI270790v1_alt 220246 + 81561 81604 L1PA8 5853 + 5078 5120 94518 16 1 0 26 chain 76967 chr4_KI270790v1_alt 220246 + 121294 122135 L1PA2 6032 + 5188 6028 22327 766 1 0 74 chain 28241 chr4_KI270790v1_alt 220246 + 153816 154176 L1PA8A 6298 + 5931 6291 44500 46 3 1 180 2 4 13 8 0 8 0 8 100 chain 32095 chr4_KI270790v1_alt 220246 + 156070 156417 L1PA2 6032 + 5682 6029 40278 347 chain 16006 chr4_KI270790v1_alt 220246 + 157924 158119 L1PA7 6471 + 6266 6461 61018 195 chain 48894 chr4_KI270790v1_alt 220246 + 172641 173168 L1PA2 6032 + 5505 6032 29980 527 chain 3886 chr4_GL383528v1_alt 376187 + 118555 118601 L1PA8 5853 + 5807 5853 92239 46 chain 261007 chr4_GL383528v1_alt 376187 + 134714 137595 L1PA3long 6157 + 3276 6157 7943 2881 chain 7419 chr4_GL383528v1_alt 376187 + 138914 139027 LOR1b 457 + 8 131 76346 15 14 24 84 chain 56218 chr4_GL383528v1_alt 376187 + 207447 208180 LTR30 714 + 0 714 27505 215 1 0 27 22 3 10 2 1 193 8 9 96 1 2 158 chain 10091 chr4_GL383528v1_alt 376187 + 214812 214931 MER85 139 + 10 139 70215 79 0 10 40 chain 14021 chr4_GL383528v1_alt 376187 + 260762 260937 MER4A1 472 + 279 454 63560 175 chain 22793 chr4_GL383528v1_alt 376187 + 261496 261792 AluY 311 + 3 297 52679 120 9 5 136 0 2 31 chain 11031 chr4_GL383528v1_alt 376187 + 287056 287239 MER30B 195 + 6 180 68514 66 17 8 28 0 6 10 6 0 56 chain 3998 chr4_GL383528v1_alt 376187 + 324311 324358 L1PB1 5432 + 5245 5291 91461 36 1 0 10 chain 413004 chr4_GL383528v1_alt 376187 + 365389 370706 L1PA8 5853 + 559 5791 4988 175 0 1 30 3 0 107 1 2 265 1 0 170 0 1 9 0 1 101 1 0 230 5 4 435 103 3 278 0 2 202 0 1 644 0 1 173 0 1 642 0 1 16 0 4 55 10 0 19 1 0 35 0 12 560 2 0 95 0 1 48 0 1 33 0 2 65 0 1 25 5 3 71 0 2 7 0 1 5 0 10 412 8 7 36 1 0 44 2 0 71 10 13 6 5 0 42 2 1 24 5 4 22 chain 115209 chr4_KI270787v1_alt 111943 + 0 1647 L1PB1 5432 + 1969 4456 16356 56 1 2 109 2 0 79 8 9 27 5 0 16 0 3 7 3 0 7 0 2 89 0 7 113 5 0 36 7 681 140 24 23 13 0 1 240 0 1 103 2 0 170 0 1 9 29 180 112 10 5 82 0 21 143 chain 27886 chr4_KI270787v1_alt 111943 + 4169 4550 LOR1a 498 + 0 381 45057 47 6 7 42 1 0 112 1 0 59 5 6 108 chain 459687 chr4_KI270787v1_alt 111943 + 13471 18851 L1PA6 6164 + 0 6161 4138 88 0 735 83 0 4 164 0 1 370 0 1 647 0 13 107 0 2 119 1 0 534 0 16 180 2 0 56 0 1 56 1 2 12 1 0 19 5 6 7 1 0 835 1 0 218 0 3 414 0 1 612 0 1 8 0 5 437 0 1 78 0 1 324 chain 52073 chr4_KI270787v1_alt 111943 + 21659 22432 L1PA8 5853 + 5018 5853 28856 47 86 150 25 0 4 249 0 1 25 4 5 40 1 0 44 2 0 74 1 0 6 2 0 52 2 1 19 1 0 93 chain 537344 chr4_KI270787v1_alt 111943 + 29564 35691 L1PA4 6152 + 10 6143 1492 17 4 0 1788 12 10 491 0 4 66 0 4 226 7 8 1927 0 1 544 0 1 941 0 1 104 chain 44840 chr4_KI270787v1_alt 111943 + 59633 60226 L1PB3 3668 + 1481 2086 31670 137 5 4 6 0 5 142 1 0 22 0 1 123 6 14 151 chain 76431 chr4_KI270787v1_alt 111943 + 63296 64450 L1PB1 5432 + 4238 5414 22451 18 0 1 40 0 1 146 2 0 5 0 2 143 7 10 23 2 0 78 0 2 105 0 1 49 5 58 171 12 15 8 10 0 42 2 0 3 2 0 9 3 1 50 1 0 58 4 3 15 5 0 16 9 0 15 3 1 5 1 0 14 2 0 23 2 1 23 1 0 11 1 0 10 chain 21591 chr4_KI270787v1_alt 111943 + 87042 87302 L1PA7 6471 + 6207 6470 54373 248 1 4 11 chain 26494 chr4_GL000257v2_alt 586476 + 20593 20898 AluSp 311 + 0 302 46988 24 3 0 278 chain 3311 chr4_GL000257v2_alt 586476 + 48590 48633 L1ME2 1516 + 541 584 96909 43 chain 27138 chr4_GL000257v2_alt 586476 + 57924 58270 THE1D-int 1627 + 23 367 46067 105 2 0 239 chain 15878 chr4_GL000257v2_alt 586476 + 60595 60786 L1PA8A 6298 + 6100 6291 61183 191 chain 25398 chr4_GL000257v2_alt 586476 + 97392 97700 AluSg7 307 + 0 297 48625 37 12 0 94 0 1 165 chain 23164 chr4_GL000257v2_alt 586476 + 99557 99950 LTR7 482 + 0 473 52124 51 47 35 15 15 14 17 2 53 15 0 10 14 8 40 16 1 0 9 0 1 183 chain 32118 chr4_GL000257v2_alt 586476 + 103790 104200 MER4A1 472 + 35 472 40254 76 0 1 112 2 23 175 0 5 45 chain 501392 chr4_GL000257v2_alt 586476 + 113940 120027 L1PA6 6164 + 0 6162 3083 45 0 14 79 4 16 45 0 1 83 58 72 154 2 1 325 0 1 103 0 25 122 0 3 822 25 29 177 0 3 203 11 5 259 0 3 1514 0 1 178 0 1 1031 1 0 796 0 1 50 chain 3209 chr4_GL000257v2_alt 586476 + 124922 124998 LTR33 499 + 64 139 97806 16 29 28 31 chain 20556 chr4_GL000257v2_alt 586476 + 131659 131882 L1PA6 6164 + 5092 5315 55702 223 chain 72012 chr4_GL000257v2_alt 586476 + 131883 132729 L1PA6 6164 + 5315 6161 23536 846 chain 114348 chr4_GL000257v2_alt 586476 + 150390 151771 L1PA7 6471 + 5102 6459 16497 221 0 2 274 0 4 13 1 4 139 0 1 317 35 0 104 0 1 277 chain 3877 chr4_GL000257v2_alt 586476 + 158351 158395 MADE2 80 + 3 47 92304 44 chain 46682 chr4_GL000257v2_alt 586476 + 215532 216098 L1PA7 6471 + 5903 6470 30779 235 0 1 331 chain 168642 chr4_GL000257v2_alt 586476 + 235200 237511 MER4-int 2692 + 335 2680 11172 84 14 20 214 1 2 114 0 6 9 0 13 42 0 2 144 0 1 84 2 0 21 0 5 323 0 2 32 4 0 11 11 9 91 0 1 188 0 1 28 10 9 225 1 0 28 0 1 209 25 25 68 0 1 101 0 1 133 3 7 39 1 0 51 chain 8455 chr4_GL000257v2_alt 586476 + 237566 237665 MER4A1 472 + 81 181 73786 68 0 1 31 chain 33026 chr4_GL000257v2_alt 586476 + 248096 248500 MER48 407 + 3 407 39498 404 chain 186176 chr4_GL000257v2_alt 586476 + 248853 252218 HERVH48-int 3304 + 119 3245 10288 7 2 0 8 6 2 7 2 0 10 2 0 3 4 0 14 3 1 10 1 0 5 7 5 5 2 0 24 1 0 38 55 34 4 1 0 70 5 0 75 1 0 15 22 13 83 1 0 7 14 12 55 12 3 15 9 5 10 12 9 70 2 0 40 1 0 27 2 1 47 3 1 19 28 20 117 5 2 10 1 0 20 1 0 9 6 5 32 12 7 16 2 0 6 1 0 15 1 0 23 2 0 24 1 0 16 2 0 5 1 0 6 10 4 121 2 1 11 1 0 77 16 17 100 0 2 5 3 7 18 3 12 78 1 0 76 15 16 189 2 0 6 5 4 244 1 0 18 14 1 64 6 5 12 1 0 47 9 8 221 1 0 3 1 0 19 1 0 44 4 2 44 2 0 17 2 0 7 2 0 11 2 0 5 61 40 12 4 0 11 39 30 27 3 0 8 14 6 25 13 5 9 1 0 23 1 0 5 1 0 24 8 9 12 1 0 7 3 0 60 64 48 72 90 64 26 chain 69331 chr4_GL000257v2_alt 586476 + 279112 280204 MER11A 1151 + 0 1151 24153 79 0 8 141 1 0 66 0 11 27 37 0 113 0 1 86 0 12 138 6 9 11 12 13 28 0 4 13 54 55 17 5 63 99 12 11 80 12 11 55 chain 6924 chr4_GL000257v2_alt 586476 + 297287 297368 L1PA4 6152 - 5571 5652 77869 81 chain 60318 chr4_GL000257v2_alt 586476 + 297394 298102 L1PA4 6152 + 2832 3541 26290 290 0 1 418 chain 5802 chr4_GL000257v2_alt 586476 + 368733 368807 L1MB2 1706 + 951 1025 81910 74 chain 33483 chr4_GL000257v2_alt 586476 + 377328 378198 HERV30-int 1034 + 162 754 39103 38 1 0 59 34 1 43 17 12 38 12 0 77 1 0 90 21 6 33 37 3 19 108 51 15 120 39 49 39 0 19 chain 67084 chr4_GL000257v2_alt 586476 + 424887 425702 L1PA7 6471 + 5646 6467 24687 433 10 16 372 chain 43641 chr4_GL000257v2_alt 586476 + 441074 441667 LTR10C 591 + 0 589 32360 37 5 6 344 14 12 43 0 2 66 6 1 78 chain 9017 chr4_GL000257v2_alt 586476 + 442271 442380 MSTA-int 1630 + 18 127 72524 109 chain 34460 chr4_GL000257v2_alt 586476 + 460455 460837 L1P1 4361 + 3948 4328 38388 202 1 0 155 1 0 23 chain 42426 chr4_GL000257v2_alt 586476 + 498201 498741 MER9a2 513 + 0 513 33110 48 0 1 250 32 0 82 0 4 128 chain 433057 chr4_GL000257v2_alt 586476 + 511349 516711 L1PA6 6164 + 764 6151 4706 76 0 1 963 0 2 519 12 0 203 0 10 255 0 4 393 0 1 109 0 1 99 0 1 106 0 4 314 5 6 73 0 2 45 0 1 222 1 2 192 0 4 595 0 1 10 0 1 1014 1 2 60 0 1 95 chain 46593 chr4_GL000257v2_alt 586476 + 530824 531431 LTR10C 591 + 0 589 30813 508 16 3 47 5 0 31 chain 8658 chr4_GL000257v2_alt 586476 + 532039 532145 MSTA-int 1630 + 22 128 73333 106 chain 18028 chr4_GL000257v2_alt 586476 + 544505 544745 THE1B-int 1605 + 96 356 58625 16 0 7 114 1 12 20 0 2 89 chain 84710 chr4_GL000257v2_alt 586476 + 564657 565675 MER11C 1089 + 2 1024 20682 561 8 5 48 1 3 385 0 5 15 chain 6823 chr4_KI270788v1_alt 158965 + 1740 1813 L1HS 6032 + 5959 6032 78226 73 chain 31335 chr4_KI270788v1_alt 158965 + 61507 61974 MLT2A1 477 + 0 477 40859 84 1 0 58 0 1 20 6 10 222 6 22 32 26 16 12 chain 9353 chr4_KI270788v1_alt 158965 + 125341 125443 L1PA2 6032 + 5660 5762 71804 102 chain 18324 chr4_KI270788v1_alt 158965 + 141194 141476 THE1B 368 + 0 289 58329 131 1 7 31 8 7 30 4 8 13 4 3 12 2 1 46 chain 191330 chr4_GL383527v1_alt 164536 + 11813 14736 MER4-int 2692 + 73 2680 10051 26 2 0 15 2 1 5 4 0 159 363 44 273 0 1 118 1 2 8 6 1 38 0 4 169 0 1 62 6 8 97 1 0 281 4 20 28 1 0 31 2 3 19 0 14 250 3 5 134 1 0 223 38 4 158 0 2 135 1 0 51 1 0 101 0 10 106 chain 439010 chr4_GL383527v1_alt 164536 + 56961 61970 L1PA5 6144 + 731 6086 4588 235 4 348 861 0 2 2135 1 0 996 0 1 777 chain 41415 chr4_GL383527v1_alt 164536 + 93501 94012 MER9a3 513 + 2 513 33727 20 0 1 132 2 1 48 13 12 218 0 1 78 chain 27069 chr4_GL383527v1_alt 164536 + 97711 98051 THE1A 353 + 0 341 46169 110 1 0 185 0 2 44 chain 123608 chr4_GL383527v1_alt 164536 + 98061 99603 THE1A-int 1579 + 0 1579 14914 84 2 1 114 3 0 43 0 1 195 2 1 335 0 23 210 3 19 143 0 1 112 0 1 296 chain 27969 chr4_GL383527v1_alt 164536 + 99603 99956 THE1A 353 + 0 353 44919 73 0 1 26 1 0 9 2 1 69 0 1 173 chain 8469 chr4_GL383527v1_alt 164536 + 125479 125569 L1PA2 6032 + 5940 6030 73753 90 chain 12863 chr4_GL383527v1_alt 164536 + 134841 135018 L1PB2 3958 + 3664 3838 65319 6 0 1 8 1 0 70 2 0 25 2 1 63 chain 9919 chr4_GL383527v1_alt 164536 + 145210 145331 THE1D 372 + 0 122 70579 111 0 1 10 chain 6083 chr4_KI270785v1_alt 119912 + 12253 12323 MER121 330 + 114 184 80790 70 chain 90610 chr4_KI270785v1_alt 119912 + 74832 75986 L1PA10 4194 + 2997 4147 19572 134 10 11 334 6 0 209 1 0 222 4 9 201 13 10 20 chain 21850 chr4_KI270785v1_alt 119912 + 104817 105188 THE1B 368 + 0 368 54040 59 64 63 50 4 3 112 2 1 80 chain 123067 chr4_KI270785v1_alt 119912 + 105188 106742 THE1B-int 1605 + 0 1593 15013 24 0 1 316 0 13 76 1 26 563 0 1 360 1 0 213 chain 34971 chr4_KI270789v1_alt 205944 + 22583 23110 L1PBa 3878 + 1284 1802 38034 57 20 19 245 69 57 94 0 4 42 chain 22859 chr4_KI270789v1_alt 205944 + 43172 43469 LOR1b 457 + 148 443 52565 99 3 1 195 chain 24359 chr4_KI270789v1_alt 205944 + 48797 49155 THE1B 368 + 0 368 50236 159 11 10 29 8 6 10 0 4 10 7 16 5 1 0 67 0 1 51 chain 12739 chr4_KI270789v1_alt 205944 + 58148 58384 MER30 238 + 7 238 65542 68 8 0 15 44 43 19 0 1 38 1 4 43 chain 48038 chr4_KI270789v1_alt 205944 + 96882 97449 LTR22 571 + 0 571 30281 17 0 1 109 0 1 384 0 2 57 chain 28301 chr4_KI270789v1_alt 205944 + 118702 119172 LTR12_ 688 + 0 687 44412 179 24 0 75 69 74 63 0 236 60 chain 31380 chr4_KI270789v1_alt 205944 + 122385 122787 LOR1b 457 + 51 450 40824 97 3 0 302 chain 26021 chr4_KI270789v1_alt 205944 + 183490 183846 THE1B 368 + 0 368 47692 15 2 0 25 0 5 14 0 1 47 2 3 33 5 13 16 1 0 196 chain 26910 chr4_KI270789v1_alt 205944 + 184127 184477 THE1B 368 + 0 368 46396 43 1 12 121 1 0 130 5 13 49 chain 120305 chr4_KI270789v1_alt 205944 + 184477 186378 THE1B-int 1605 + 0 1597 15480 35 0 3 187 3 4 13 1 2 159 13 14 9 0 25 67 304 1 41 0 1 638 40 6 198 1 2 192 chain 25426 chr4_KI270789v1_alt 205944 + 186386 186731 THE1B 368 + 0 368 48591 40 0 15 121 1 0 72 1 2 56 5 13 49 chain 27423 chr4_KI270786v1_alt 244096 + 37039 37332 AluYb8 318 + 0 291 45676 132 2 0 159 chain 38748 chr4_KI270786v1_alt 244096 + 52166 52629 LTR2 463 + 0 463 35529 463 chain 80639 chr4_KI270786v1_alt 244096 + 131683 132556 L1PA4 6152 + 5006 5880 21506 811 0 1 62 chain 122716 chr4_KI270786v1_alt 244096 + 214527 215885 L1PA4 6152 + 4521 5880 15080 344 0 1 1014 chain 5243 chr4_KI270786v1_alt 244096 + 226902 227042 Ricksha_c 1012 + 91 216 84487 39 33 29 9 1 0 7 5 0 27 7 2 12 chain 25225 chr5_KI270793v1_alt 126136 + 36675 37035 THE1C 375 + 0 364 48907 144 8 9 16 23 26 169 chain 54861 chr5_KI270793v1_alt 126136 + 49221 49985 LTR12 884 + 0 873 27920 12 0 1 12 1 0 53 3 1 4 1 0 126 15 17 110 1 2 40 10 8 162 0 103 97 0 8 117 chain 10916 chr5_KI270792v1_alt 179043 + 135792 136017 LTR8 732 + 586 732 68674 78 79 0 68 chain 8603 chr5_KI270792v1_alt 179043 + 165700 165861 MER4D 903 + 727 895 73447 53 41 46 20 0 1 41 0 1 6 chain 17091 chr5_KI270791v1_alt 195710 + 164204 164407 L1PA6 6164 + 5934 6147 59707 79 0 10 124 chain 15130 chr5_GL949742v1_alt 226852 + 10354 10580 L1PA8 5853 + 5632 5853 62125 30 0 1 10 1 0 5 4 1 13 3 1 6 0 1 40 2 1 112 chain 91108 chr5_GL949742v1_alt 226852 + 21077 22094 L1PA4 6152 + 3637 4655 19483 51 0 1 966 chain 34373 chr5_GL949742v1_alt 226852 + 64424 64883 LTR2 463 + 2 463 38447 174 12 14 132 0 1 58 0 1 29 1 0 28 1 0 24 chain 6098 chr5_KI270794v1_alt 164558 + 624 697 MER63A 208 + 88 161 80739 73 chain 9627 chr5_KI270794v1_alt 164558 + 42886 43008 MER85 139 + 7 139 71202 92 0 10 30 chain 86709 chr5_KI270794v1_alt 164558 + 45230 46262 MER11C 1089 + 0 1059 20272 58 4 13 149 0 5 24 0 1 66 1 5 369 0 4 43 0 1 148 0 1 99 0 2 71 chain 512745 chr5_KI270794v1_alt 164558 + 60039 66317 L1PA7 6471 + 6 6469 2631 38 0 1 358 0 3 991 0 3 328 0 1 30 1 0 5 1 0 4 0 1 36 1 0 4 0 1 218 28 8 94 0 2 330 0 1 57 0 2 109 0 3 970 15 0 80 5 6 471 0 1 643 17 6 576 0 214 19 1 4 513 1 0 319 2 0 13 chain 73297 chr5_KI270794v1_alt 164558 + 107216 108258 MER11A 1151 + 0 1151 23262 60 7 106 122 9 6 34 35 0 60 0 1 54 0 1 116 1 0 50 10 16 213 13 20 8 0 35 183 7 6 60 chain 43516 chr5_KI270794v1_alt 164558 + 117477 118041 THE1B-int 1605 + 0 1605 32441 13 4 3 256 12 1054 279 chain 21973 chr5_KI270794v1_alt 164558 + 118043 118342 THE1B 368 + 2 306 53875 167 1 0 19 5 7 4 0 1 9 0 4 17 1 0 76 chain 31351 chr5_KI270794v1_alt 164558 + 132486 132950 MER4A1 472 + 0 472 40847 14 0 2 18 7 14 93 2 1 38 24 25 12 6 5 250 chain 58687 chr5_KI270794v1_alt 164558 + 154834 155458 L1HS 6032 + 1817 2441 26761 624 chain 15998 chr5_KI270794v1_alt 164558 + 161722 162069 L1PB1 5432 + 5105 5420 61024 9 1 0 33 1 0 9 27 21 43 18 16 41 48 33 4 0 1 12 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 57506 chr5_GL339449v2_alt 1612928 + 3689 4373 SVA_A 1864 + 1164 1854 27103 80 3 0 36 38 47 244 0 2 180 2 0 101 chain 34030 chr5_GL339449v2_alt 1612928 + 88656 89067 LTR3 431 + 6 422 38686 42 0 1 213 0 3 64 0 1 92 chain 126687 chr5_GL339449v2_alt 1612928 + 91821 93379 THE1A-int 1579 + 0 1568 14452 870 0 1 483 12 21 193 chain 5651 chr5_GL339449v2_alt 1612928 + 99938 100009 MLT1D 503 + 405 476 82555 71 chain 12277 chr5_GL339449v2_alt 1612928 + 126102 126237 L1PA7 6471 + 6332 6467 66319 135 chain 4770 chr5_GL339449v2_alt 1612928 + 189106 189162 L1MA8 2339 + 1748 1804 86849 56 chain 91180 chr5_GL339449v2_alt 1612928 + 205273 206337 MER11C 1089 + 0 1073 19472 225 0 5 356 12 13 176 0 1 9 0 1 140 1 2 145 chain 31730 chr5_GL339449v2_alt 1612928 + 208479 208823 L1PA2 6032 + 5680 6024 40551 344 chain 65747 chr5_GL339449v2_alt 1612928 + 249287 250097 LTR12 884 + 7 884 25015 70 0 66 58 0 2 174 2 0 159 0 2 171 1 0 175 chain 117081 chr5_GL339449v2_alt 1612928 + 253487 254932 L1PA8 5853 + 4425 5853 16043 528 0 1 56 2 0 146 11 0 62 2 0 153 0 3 153 0 1 36 7 6 38 2 0 71 1 0 8 2 1 56 1 0 16 1 0 93 chain 24706 chr5_GL339449v2_alt 1612928 + 280779 281037 AluYa5 310 + 34 292 49721 258 chain 16517 chr5_GL339449v2_alt 1612928 + 347335 347569 L1PA16 3655 + 2980 3200 60344 59 18 5 8 1 0 148 chain 8020 chr5_GL339449v2_alt 1612928 + 358676 358769 Tigger1 2417 + 871 964 74834 93 chain 261745 chr5_GL339449v2_alt 1612928 + 452014 454872 L1PA3long 6157 + 2659 5529 7920 535 0 4 1731 0 1 206 1 8 385 chain 30288 chr5_GL339449v2_alt 1612928 + 495734 496110 THE1C 375 + 0 375 41776 24 1 0 161 1 2 163 1 0 25 chain 13575 chr5_GL339449v2_alt 1612928 + 496514 496720 MER75B 242 + 0 218 64206 120 3 8 18 23 30 42 chain 22634 chr5_GL339449v2_alt 1612928 + 504541 504816 AluSp 311 + 11 287 52936 240 0 1 35 chain 12866 chr5_GL339449v2_alt 1612928 + 505766 505922 L1PA6 6164 + 6009 6162 65315 139 4 1 13 chain 26481 chr5_GL339449v2_alt 1612928 + 615198 615498 L1PA3long 6157 + 5857 6157 47010 300 chain 105200 chr5_GL339449v2_alt 1612928 + 674838 675998 L1PA3long 6157 + 4567 5726 17659 903 1 0 256 chain 119010 chr5_GL339449v2_alt 1612928 + 686770 688081 L1PA3long 6157 + 4097 5408 15694 1311 chain 4241 chr5_GL339449v2_alt 1612928 + 728541 728735 MER2 342 + 222 320 89867 10 75 0 46 44 23 19 chain 115461 chr5_GL339449v2_alt 1612928 + 734321 735832 L1PA8A 6298 + 4780 6289 16318 144 14 18 77 0 1 57 0 1 21 5 7 160 3 0 61 0 1 39 8 1 121 2 1 81 1 2 428 1 0 288 chain 28195 chr5_GL339449v2_alt 1612928 + 738872 739521 L1PB1 5432 + 4922 5404 44571 32 1 4 115 4 0 6 162 29 6 3 0 24 1 0 8 1 0 12 5 1 8 2 0 53 3 2 14 1 0 45 1 0 15 24 12 19 7 4 15 2 0 24 1 0 21 1 0 13 chain 16429 chr5_GL339449v2_alt 1612928 + 739760 739933 AluYa5 310 + 130 303 60473 173 chain 25040 chr5_GL339449v2_alt 1612928 + 756366 756664 L1PA5 6144 + 5844 6142 49211 298 chain 31056 chr5_GL339449v2_alt 1612928 + 778304 778723 L1PA8 5853 + 5442 5853 41087 16 1 0 106 1 0 43 3 1 71 2 1 13 1 0 47 2 1 19 2 1 92 chain 64779 chr5_GL339449v2_alt 1612928 + 788840 789589 L1PA6 6164 + 5404 6153 25240 749 chain 25566 chr5_GL339449v2_alt 1612928 + 816220 816661 L1PA15 4387 + 3898 4326 48374 35 1 0 167 6 5 15 41 40 25 1 0 22 4 0 10 1 0 50 6 3 12 0 1 31 3 1 11 chain 192609 chr5_GL339449v2_alt 1612928 + 862491 864760 L1PA6 6164 + 3754 6042 9990 898 0 5 16 1 0 255 0 9 44 0 1 337 1 5 697 1 2 19 chain 65931 chr5_GL339449v2_alt 1612928 + 873049 873780 L1PA3long 6157 + 5426 6157 24973 731 chain 37936 chr5_GL339449v2_alt 1612928 + 885002 885423 L1PA3long 6157 + 5725 6145 36114 415 1 0 5 chain 14413 chr5_GL339449v2_alt 1612928 + 1021754 1021984 Tigger3b 1229 + 648 925 63014 18 0 5 23 0 8 7 8 27 8 0 4 22 8 7 21 0 2 13 0 10 102 chain 13958 chr5_GL339449v2_alt 1612928 + 1026585 1026766 MSTA 426 + 230 416 63654 135 1 6 45 chain 4496 chr5_GL339449v2_alt 1612928 + 1031337 1031391 LTR41 747 + 679 733 88349 54 chain 26481 chr5_GL339449v2_alt 1612928 + 1128170 1128470 L1PA3long 6157 + 5857 6157 47009 300 chain 106344 chr5_GL339449v2_alt 1612928 + 1251230 1252389 L1PA3long 6157 + 4567 5726 17515 1159 chain 113688 chr5_GL339449v2_alt 1612928 + 1309933 1311455 L1PA8A 6298 + 4780 6289 16589 144 14 18 77 0 1 57 0 1 21 5 7 163 3 0 58 0 1 39 19 1 121 2 1 81 1 2 289 23 23 121 1 0 283 chain 28353 chr5_GL339449v2_alt 1612928 + 1314492 1315091 L1PB1 5432 + 4922 5404 44336 32 1 4 115 4 0 6 8 16 8 73 0 13 21 0 22 1 0 8 1 0 12 5 1 8 2 0 53 3 2 14 1 0 45 1 0 15 24 12 19 7 4 15 2 0 24 1 0 21 1 0 13 chain 25143 chr5_GL339449v2_alt 1612928 + 1331407 1331701 L1PA5 6144 + 5844 6138 49046 294 chain 43725 chr5_GL339449v2_alt 1612928 + 1397554 1398116 MER41A 554 + 0 554 32302 92 0 1 244 10 1 216 chain 30493 chr5_GL339449v2_alt 1612928 + 1570410 1570801 LTR3A 482 + 26 420 41580 96 0 1 37 0 1 193 0 1 34 0 1 8 6 5 17 chain 10586 chr5_GL339449v2_alt 1612928 + 1570919 1571397 HERVK3-int 3053 + 39 436 69255 20 99 72 5 1 0 13 14 0 45 132 102 17 2 1 47 29 26 18 5 0 31 chain 33515 chr5_GL339449v2_alt 1612928 + 1576434 1576886 LTR3A 482 + 26 482 39078 95 0 2 37 0 1 193 0 1 34 0 1 8 6 5 17 19 18 4 0 1 39 chain 104250 chr5_GL383530v1_alt 101241 + 6526 7745 L1PA6 6164 + 2588 3809 17788 517 0 1 25 0 1 296 1 0 57 1 2 322 chain 8921 chr5_GL383530v1_alt 101241 + 23770 23886 MER85 139 + 5 131 72735 83 1 11 32 chain 4183 chr5_GL383530v1_alt 101241 + 28320 28466 L1PB1 5432 + 5280 5418 90240 21 53 44 25 12 11 11 0 3 9 1 0 14 chain 195743 chr5_GL383530v1_alt 101241 + 59184 61348 L1PA3long 6157 + 893 3055 9851 152 0 1 8 1 0 1545 0 1 156 3 0 299 chain 4410 chr5_GL383530v1_alt 101241 + 93832 93901 MLT2D 439 + 302 370 88845 13 8 7 48 chain 223225 chr5_GL383530v1_alt 101241 + 98647 101241 L1P1 4361 + 599 3182 8952 268 0 2 247 0 1 279 0 1 1190 0 1 523 17 1 70 chain 13713 chr5_KI270796v1_alt 172708 + 47377 47551 MER30 238 + 0 200 64000 113 0 26 61 chain 24368 chr5_KI270796v1_alt 172708 + 154343 154679 THE1C 375 + 0 336 50218 104 4 5 68 1 0 6 3 4 60 3 2 87 chain 4635 chr5_KI270796v1_alt 172708 + 154812 154872 THE1C-int 1605 + 153 210 87628 13 3 0 44 chain 125034 chr5_KI270796v1_alt 172708 + 170945 172661 L1PBa 3878 + 1945 3738 14694 149 2 36 348 0 3 178 5 8 46 0 1 40 2 6 32 11 12 60 0 1 108 34 61 19 0 4 40 5 8 115 3 0 495 2 1 22 chain 5811 chr5_GL383531v1_alt 173459 + 7906 7979 L1MA5A 2387 + 2230 2302 81872 65 1 0 7 chain 539537 chr5_GL383531v1_alt 173459 + 9974 15994 L1PA2 6032 + 3 6032 1370 71 3 5 96 0 10 72 1 0 415 4 3 1617 0 5 1723 8 1 140 0 1 1870 chain 174710 chr5_GL383531v1_alt 173459 + 45362 47281 L1PA3long 6157 + 4241 6157 10856 824 2 0 753 0 1 333 2 0 5 chain 310302 chr5_GL383531v1_alt 173459 + 81461 84953 L1PA4 6152 + 2395 5879 6607 308 0 5 311 10 1 1015 6 1 657 0 1 1185 chain 102681 chr5_GL383531v1_alt 173459 + 109419 110557 L1PA3long 6157 + 5018 6157 17983 372 0 1 766 chain 59252 chr5_KI270795v1_alt 131892 + 60884 61620 L1PA8 5853 + 5121 5853 26585 398 0 3 40 1 0 46 2 0 74 1 0 5 2 1 52 2 1 19 1 0 93 chain 38486 chr5_KI270795v1_alt 131892 + 80308 80871 LTR19B 566 + 0 566 35722 106 3 0 26 0 4 31 7 0 120 0 1 13 7 0 135 35 34 21 0 9 11 1 4 32 0 4 15 chain 6160 chr6_GL000250v2_alt 4672374 + 13336 13409 tRNA-Lys-AAA 73 + 0 73 80495 73 chain 6258 chr6_GL000250v2_alt 4672374 + 29979 30048 tRNA-Phe-TTY 73 + 0 69 80143 69 chain 43648 chr6_GL000250v2_alt 4672374 + 42194 42806 LTR71B 605 + 0 595 32355 127 61 52 173 3 1 163 6 0 79 chain 2947 chr6_GL000250v2_alt 4672374 + 62460 62491 U2 167 + 0 31 100401 31 chain 193658 chr6_GL000250v2_alt 4672374 + 95567 97825 L1PA6 6164 + 3939 6162 9944 423 0 4 283 1 0 679 10 0 429 24 0 396 4 0 9 chain 405793 chr6_GL000250v2_alt 4672374 + 115804 120492 L1PA5 6144 + 1436 6129 5075 664 0 3 67 2 0 42 1 0 101 9 7 876 1 0 1145 0 4 415 0 1 967 0 1 190 0 1 72 5 6 131 chain 8544 chr6_GL000250v2_alt 4672374 + 123460 123563 MER57A1 433 + 325 428 73583 103 chain 2737 chr6_GL000250v2_alt 4672374 + 130640 130718 MER39 703 + 449 528 102070 17 35 36 26 chain 7021 chr6_GL000250v2_alt 4672374 + 146971 147044 tRNA-Arg-CGG 73 + 0 73 77528 73 chain 6975 chr6_GL000250v2_alt 4672374 + 247783 247855 tRNA-Glu-GAG_ 72 + 0 72 77697 72 chain 20433 chr6_GL000250v2_alt 4672374 + 253474 253709 AluSp 311 + 5 239 55851 106 2 1 127 chain 7808 chr6_GL000250v2_alt 4672374 + 254625 254707 tRNA-Leu-CTY 82 + 0 82 75358 82 chain 8214 chr6_GL000250v2_alt 4672374 + 276009 276243 L1MC1 2226 + 1918 2098 74374 61 18 13 47 93 44 15 chain 17255 chr6_GL000250v2_alt 4672374 + 281182 281487 LTR12C 1709 + 778 1086 59516 51 0 81 133 78 0 43 chain 7108 chr6_GL000250v2_alt 4672374 + 312137 312341 L1MA10 1535 + 1329 1501 77235 59 42 25 24 51 36 28 chain 30098 chr6_GL000250v2_alt 4672374 + 421879 422238 L1P1 4361 + 3334 3691 41955 349 2 0 8 chain 4048 chr6_GL000250v2_alt 4672374 + 429244 429287 L1PA2 6032 + 5725 5768 91095 43 chain 541133 chr6_GL000250v2_alt 4672374 + 539083 545231 L1PA4 6152 + 2 6151 1269 125 14 0 15 10 24 252 0 3 6 4 1 14 6 7 795 7 6 1097 0 1 4 1 0 1692 0 1 2106 chain 183547 chr6_GL000250v2_alt 4672374 + 547809 550025 L1PA7 6471 + 4233 6467 10408 443 0 4 275 1 0 367 0 1 299 0 2 53 8 0 378 0 4 134 2 3 123 1 16 132 chain 4686 chr6_GL000250v2_alt 4672374 + 561777 561832 MER52D 1964 + 1150 1205 87352 55 chain 32712 chr6_GL000250v2_alt 4672374 + 562086 562531 LTR7 482 + 0 477 39749 101 15 14 110 4 3 39 0 31 21 0 2 98 13 14 44 chain 90547 chr6_GL000250v2_alt 4672374 + 564709 565719 L1PA4 6152 + 4169 5186 19590 179 0 4 57 0 1 380 0 2 394 chain 2947 chr6_GL000250v2_alt 4672374 + 720570 720601 U2 167 + 0 31 100400 31 chain 53120 chr6_GL000250v2_alt 4672374 + 739736 740332 L1PA4 6152 + 5543 6138 28531 349 1 0 246 chain 3755 chr6_GL000250v2_alt 4672374 + 805455 805499 MER81 114 + 1 45 93184 44 chain 64720 chr6_GL000250v2_alt 4672374 + 823909 824685 LTR17 781 + 0 781 25260 256 0 1 70 0 1 101 1 2 83 0 1 56 0 1 209 chain 3823 chr6_GL000250v2_alt 4672374 + 858303 858378 LTR39 781 + 464 539 92695 31 7 8 23 4 3 10 chain 4874 chr6_GL000250v2_alt 4672374 + 861039 861098 Tigger2b_Pri 1066 + 52 112 86303 22 0 1 37 chain 4701 chr6_GL000250v2_alt 4672374 + 880490 880560 L1MC1 2226 + 2129 2196 87265 6 1 0 17 1 0 32 1 0 12 chain 4440 chr6_GL000250v2_alt 4672374 + 917874 917946 MER45C 884 + 80 153 88661 53 7 8 12 chain 57889 chr6_GL000250v2_alt 4672374 + 1040648 1041458 Charlie9 784 + 0 784 27004 33 1 0 10 0 1 110 1 0 41 0 1 256 10 6 4 1 0 8 1 0 4 1 0 4 1 0 6 5 0 5 1 0 4 1 0 15 13 0 184 0 2 90 chain 6716 chr6_GL000250v2_alt 4672374 + 1041526 1041615 L1PA10 4194 + 4064 4150 78586 53 3 0 33 chain 495049 chr6_GL000250v2_alt 4672374 + 1045621 1051657 L1PA6 6164 + 13 6153 3291 96 1 0 7 3 4 13 25 11 57 0 1 289 1 2 16 2 1 116 0 1 301 0 25 222 4 13 1144 1 2 855 0 1 74 0 8 33 0 1 645 1 2 415 0 4 110 0 2 423 11 9 131 5 7 202 0 60 12 0 1 502 0 1 110 0 2 209 chain 55500 chr6_GL000250v2_alt 4672374 + 1051876 1052705 Charlie9 784 + 0 784 27719 32 0 1 119 1 0 35 13 7 120 10 9 134 15 4 9 1 0 8 1 0 6 5 0 8 3 1 10 23 5 276 chain 4778 chr6_GL000250v2_alt 4672374 + 1052778 1052874 L1PA10 4194 + 4069 4159 86808 7 3 0 27 6 7 7 3 0 33 1 0 9 chain 3063 chr6_GL000250v2_alt 4672374 + 1084020 1084064 LTR16B2 458 + 159 204 99201 11 1 2 32 chain 58283 chr6_GL000250v2_alt 4672374 + 1086688 1087513 Charlie9 784 + 0 784 26874 32 0 1 150 16 0 19 9 10 178 0 8 58 8 0 5 3 0 9 1 0 7 2 0 7 1 0 9 1 0 10 20 5 29 1 0 179 3 0 68 chain 6917 chr6_GL000250v2_alt 4672374 + 1098072 1098172 Charlie12 129 + 30 129 77901 29 6 7 31 1 0 5 1 0 27 chain 36071 chr6_GL000250v2_alt 4672374 + 1110989 1111539 LTR10F 562 + 0 535 37363 111 0 28 89 0 3 31 83 37 182 0 1 16 3 2 35 chain 1987 chr6_GL000250v2_alt 4672374 + 1111220 1111264 LTR10F 562 + 147 191 79924 44 chain 32045 chr6_GL000250v2_alt 4672374 + 1141910 1142387 Charlie9 784 + 0 457 40317 23 0 1 7 0 1 44 0 1 75 1 0 35 11 5 136 2 1 69 24 9 50 chain 51941 chr6_GL000250v2_alt 4672374 + 1179492 1180327 Charlie9 784 + 0 784 28889 30 1 2 122 1 0 12 43 28 78 2 1 5 0 1 25 26 30 123 6 0 4 4 0 9 1 0 6 3 1 7 5 0 8 3 1 10 27 5 197 0 2 77 chain 33793 chr6_GL000250v2_alt 4672374 + 1194775 1195232 Charlie9 784 + 0 453 38855 24 6 8 122 1 0 12 0 1 20 12 7 133 1 0 126 chain 3049 chr6_GL000250v2_alt 4672374 + 1204550 1204585 MER30B 195 + 16 51 99315 35 chain 106027 chr6_GL000250v2_alt 4672374 + 1220653 1221971 L1PA7 6471 + 5179 6461 17561 422 0 5 8 1 0 338 9 1 29 0 1 153 0 1 62 39 3 41 0 2 216 chain 166861 chr6_GL000250v2_alt 4672374 + 1283378 1285936 L1PB1 5432 + 3093 5360 11283 170 0 1 275 0 3 194 8 1 20 1 0 205 5 6 347 0 1 124 1 0 64 1 2 120 4 0 219 276 0 66 7 6 41 10 3 53 0 2 81 0 24 17 1 0 8 1 0 12 5 1 9 11 9 43 2 1 15 1 0 44 1 0 16 1 0 6 59 44 14 chain 4007 chr6_GL000250v2_alt 4672374 + 1377887 1377938 MLT2D 439 + 4 55 91402 51 chain 3918 chr6_GL000250v2_alt 4672374 + 1381434 1381488 MER53 195 - 12 65 91990 6 1 0 47 chain 70311 chr6_GL000250v2_alt 4672374 + 1397974 1398812 L1PA7 6471 + 5617 6457 23918 152 0 1 537 8 9 141 chain 4035 chr6_GL000250v2_alt 4672374 + 1409351 1409480 MIR 256 + 54 195 91190 19 65 77 45 chain 25479 chr6_GL000250v2_alt 4672374 + 1420088 1420390 AluY 311 + 0 309 48514 50 0 7 252 chain 4719 chr6_GL000250v2_alt 4672374 + 1686027 1686084 MER20 218 + 98 155 87140 57 chain 126219 chr6_GL000250v2_alt 4672374 + 1714715 1716501 L1PB2 3958 + 1118 2874 14520 85 0 1 50 1 0 25 6 7 55 0 2 125 10 13 101 5 4 11 5 4 43 1 4 121 0 1 373 7 8 167 4 5 111 0 1 47 54 12 368 0 1 11 chain 98791 chr6_GL000250v2_alt 4672374 + 1736601 1737838 THE1A-int 1579 + 341 1579 18439 851 1 2 385 chain 79160 chr6_GL000250v2_alt 4672374 + 1740800 1741747 LTR13_ 950 + 0 950 21819 579 2 1 277 0 4 89 chain 201453 chr6_GL000250v2_alt 4672374 + 1754859 1757901 L1PA11 4918 + 1644 4517 9664 153 1 0 15 5 2 306 0 4 136 1 5 48 0 1 204 0 3 214 4 7 375 1 8 11 32 155 42 1 5 62 1 5 105 2 0 152 320 0 34 1 0 89 5 6 384 0 1 152 5 0 65 2 1 13 12 11 51 7 21 18 4 0 9 chain 509557 chr6_GL000250v2_alt 4672374 + 1759785 1765918 L1PA6 6164 + 0 6159 2792 128 14 0 70 3 4 307 2 1 418 0 25 222 4 13 501 1 0 643 1 2 776 3 0 79 0 1 435 0 1 77 3 1 975 8 7 771 9 10 17 0 1 512 13 14 77 0 7 64 chain 13441 chr6_GL000250v2_alt 4672374 + 1843813 1843987 MER4A1 472 + 0 177 64404 99 1 3 29 0 1 45 chain 92037 chr6_GL000250v2_alt 4672374 + 1847301 1848706 LTR12D 1347 + 0 1347 19338 297 7 36 36 11 12 10 2 5 140 74 25 6 2 0 132 14 7 156 7 4 74 1 0 80 4 0 3 23 0 26 1 0 34 1 0 264 chain 2749 chr6_GL000250v2_alt 4672374 + 1847804 1847878 LTR12D 1347 + 567 678 80347 13 1 38 60 chain 499737 chr6_GL000250v2_alt 4672374 + 1850326 1856478 L1PA6 6164 + 13 6162 3136 369 38 32 4 0 1 30 19 0 7 0 4 107 8 7 213 0 17 378 0 3 668 0 1 177 6 0 153 7 9 141 2 1 16 32 22 469 1 3 512 0 1 231 76 76 49 0 1 229 1 0 48 0 2 514 0 2 384 1 2 335 0 1 83 1 0 367 0 5 313 0 8 8 2 1 6 7 0 135 1 0 4 chain 8341 chr6_GL000250v2_alt 4672374 + 1868760 1868871 L1MA7 2200 + 1520 1630 74056 33 1 0 77 chain 108907 chr6_GL000250v2_alt 4672374 + 2329807 2331110 LTR12C 1709 + 0 1709 17195 260 1 26 364 0 278 184 1 0 5 3 1 106 0 4 187 0 102 192 chain 8964 chr6_GL000250v2_alt 4672374 + 2347031 2347146 LTR12C 1709 + 773 928 51523 64 1 41 50 chain 24966 chr6_GL000250v2_alt 4672374 + 2347146 2347472 LTR12C 1709 + 650 991 49339 187 1 0 72 3 18 4 0 1 59 chain 144797 chr6_GL000250v2_alt 4672374 + 2350317 2352026 LTR12C 1709 + 0 1709 12707 262 0 1 574 1 0 274 1 0 6 5 3 104 0 4 276 1 0 205 chain 23571 chr6_GL000250v2_alt 4672374 + 2385836 2386177 THE1A 353 + 0 353 51474 62 37 49 242 chain 25700 chr6_GL000250v2_alt 4672374 + 2827118 2827418 AluSp 311 + 1 304 48173 140 0 3 160 chain 25044 chr6_GL000250v2_alt 4672374 + 2842643 2843025 LTR3A 482 + 27 420 49203 125 14 19 108 7 8 20 5 6 67 5 7 16 0 2 15 chain 18408 chr6_GL000250v2_alt 4672374 + 2854678 2855037 L1MA8 2339 + 1847 2188 58231 85 5 1 25 4 5 46 1 0 36 1 6 18 70 50 38 2 3 28 chain 11268 chr6_GL000250v2_alt 4672374 + 3103948 3104091 LTR7B 505 + 0 164 68135 108 0 10 21 0 11 14 chain 9226 chr6_GL000250v2_alt 4672374 + 3226292 3226520 L1MB3 1562 + 1260 1465 72069 17 0 2 72 1 0 16 86 64 7 2 0 27 chain 3468 chr6_GL000250v2_alt 4672374 + 3227595 3227635 MER44B 551 + 384 424 95470 40 chain 33302 chr6_GL000250v2_alt 4672374 + 3664039 3664490 LTR46 455 + 0 455 39257 30 9 10 147 1 5 116 1 0 96 1 0 14 0 1 36 chain 5223 chr6_GL000250v2_alt 4672374 + 3685125 3685189 U6 107 + 11 75 84578 64 chain 11321 chr6_GL000250v2_alt 4672374 + 3694585 3694770 MSTC 436 + 248 423 68053 63 23 19 37 6 0 56 chain 75610 chr6_GL000250v2_alt 4672374 + 3706556 3707531 HUERS-P2-int 2744 + 1558 2512 22687 358 4 5 340 20 0 107 1 2 4 1 0 66 1 0 48 5 4 20 chain 37612 chr6_GL000250v2_alt 4672374 + 3742699 3743096 L1HS 6032 + 5633 6030 36328 397 chain 20310 chr6_GL000250v2_alt 4672374 + 3786524 3786842 THE1B 368 + 0 328 56005 107 2 3 59 2 1 22 41 51 85 chain 32255 chr6_GL000250v2_alt 4672374 + 3789770 3790366 L1PA15 4387 + 3749 4326 40142 64 52 42 36 3 1 40 1 0 101 0 1 66 6 11 14 6 5 55 1 0 21 4 0 9 1 0 41 34 31 27 3 1 11 chain 42951 chr6_GL000250v2_alt 4672374 + 4039646 4040177 L1PA7 6471 + 5759 6292 32807 83 5 6 106 6 7 331 chain 14925 chr6_GL000250v2_alt 4672374 + 4040179 4040382 L1M1 2793 + 1889 2099 62360 119 0 4 59 4 7 21 chain 38922 chr6_GL000250v2_alt 4672374 + 4081723 4082253 MER9a1 513 + 0 513 35414 46 39 0 3 1 0 179 17 39 30 0 1 215 chain 57097 chr6_GL000250v2_alt 4672374 + 4088198 4089042 L1PA13 3608 + 219 1029 27233 72 2 0 116 33 31 7 2 0 16 32 8 11 2 1 19 3 1 15 2 0 113 2 1 365 0 2 32 chain 83837 chr6_GL000250v2_alt 4672374 + 4093292 4094459 L1PA11 4918 + 3401 4578 20838 257 3 2 36 1 0 563 0 1 50 0 4 18 13 17 46 6 5 7 2 0 68 19 16 17 4 0 11 6 22 13 1 0 13 2 0 11 chain 5358 chr6_GL000250v2_alt 4672374 + 4269246 4269374 MSTD 398 + 0 132 83921 15 53 57 60 chain 43401 chr6_GL000250v2_alt 4672374 + 4351416 4351955 THE1B-int 1605 + 0 587 32508 162 0 21 249 0 25 8 0 2 120 chain 256134 chr6_GL000250v2_alt 4672374 + 4356704 4361128 HERVK22-int 3844 + 15 3750 8086 23 3 0 194 0 1 289 0 1 45 1 4 107 4 5 16 2 0 372 4 1 113 9 1 341 0 1 426 8 12 82 1 0 330 9 7 275 0 1 335 2 3 48 1 0 66 5 4 6 1 0 16 6 5 32 1 0 21 2 0 39 15 10 45 159 119 19 10 7 28 826 198 87 chain 136859 chr6_GL000250v2_alt 4672374 + 4650562 4652342 HERVH-int 3825 + 1637 3825 13353 49 3 30 65 20 5 304 1 6 32 1 4 360 30 31 296 0 367 57 11 22 132 0 1 115 0 8 304 chain 28413 chr6_GL000250v2_alt 4672374 + 4656067 4656454 LTR7B 505 + 0 505 44245 105 0 10 56 12 81 37 2 1 21 1 42 88 2 1 63 chain 23503 chr6_GL000250v2_alt 4672374 + 4659902 4660238 LTR14B 630 + 228 628 51591 46 7 53 17 7 18 85 0 4 89 0 3 85 chain 91347 chr6_KI270800v1_alt 175808 + 4555 5550 L1PA2 6032 + 5033 6029 19442 5 0 1 990 chain 17778 chr6_KI270800v1_alt 175808 + 63839 64186 MER61A 341 + 0 339 58922 88 120 112 139 chain 33461 chr6_KI270800v1_alt 175808 + 76921 77482 MER41A 554 + 0 456 39123 182 110 12 88 16 9 165 chain 210563 chr6_KI270800v1_alt 175808 + 97011 99777 L1PA6 6164 + 3397 6162 9334 163 7 0 496 9 10 40 0 2 694 14 13 972 10 12 6 2 0 345 0 4 8 chain 42316 chr6_KI270800v1_alt 175808 + 117252 117706 L1PA2 6032 + 5578 6032 33176 454 chain 452385 chr6_KI270799v1_alt 152148 + 21014 26246 L1PA4 6152 + 1 5392 4326 64 7 0 288 41 13 1069 1 10 2161 0 1 1031 0 1 521 0 183 49 chain 44794 chr6_KI270799v1_alt 152148 + 26246 26753 L1PA3long 6157 + 5635 6142 31709 507 chain 534842 chr6_KI270799v1_alt 152148 + 34011 40027 L1PA3long 6157 + 0 6156 1629 151 1 2 140 0 1 23 0 1 46 0 1 403 8 136 1423 0 1 1191 0 1 263 1 2 859 0 1 885 0 2 280 0 1 186 2 3 154 chain 20629 chr6_KI270799v1_alt 152148 + 111251 111600 THE1D 372 + 0 347 55596 175 1 0 10 67 64 12 0 2 12 0 1 64 1 0 7 chain 64914 chr6_KI270799v1_alt 152148 + 135072 135949 MER11A 1151 + 237 1151 25212 52 8 5 38 0 2 199 3 5 22 1 0 113 9 12 5 1 0 55 0 4 56 1 0 8 1 0 5 7 41 223 6 5 64 chain 19904 chr6_GL383533v1_alt 124736 + 2598 2953 THE1B 368 + 0 356 56528 29 8 2 75 14 15 51 3 2 23 47 57 59 3 0 43 chain 112793 chr6_GL383533v1_alt 124736 + 2959 4471 THE1B-int 1605 + 3 1605 16707 193 0 10 224 1 26 89 5 4 68 3 5 59 54 106 359 0 1 6 0 1 451 chain 27342 chr6_GL383533v1_alt 124736 + 59637 59991 THE1A 353 + 0 353 45775 111 1 0 91 1 0 98 12 13 40 chain 357758 chr6_GL383533v1_alt 124736 + 105733 110052 L1P1 4361 + 4 4341 5824 43 8 22 109 5 8 328 0 1 42 13 14 35 0 4 1566 0 2 754 1 2 764 8 0 236 0 1 213 1 0 132 0 2 23 1 0 23 2 1 12 chain 145467 chr6_GL383533v1_alt 124736 + 111985 113801 L1PA5 6144 + 4347 6144 12660 85 20 0 788 0 1 923 chain 39149 chr6_KI270801v1_alt 870480 + 5777 6295 L1PA6 6164 + 5631 6161 35251 126 10 22 237 8 7 10 0 1 127 chain 12583 chr6_KI270801v1_alt 870480 + 24860 25018 L1PA7 6471 + 6310 6465 65823 148 3 0 7 chain 61281 chr6_KI270801v1_alt 870480 + 116121 116837 L1PA6 6164 + 4154 4879 26038 168 1 3 42 0 4 95 0 3 410 chain 135968 chr6_KI270801v1_alt 870480 + 127959 129593 L1PA7 6471 + 4832 6469 13437 719 0 4 138 2 1 653 0 1 109 2 1 11 chain 70872 chr6_KI270801v1_alt 870480 + 134043 134910 L1P3 4156 + 3270 4139 23785 305 0 5 527 2 0 7 2 1 24 chain 27585 chr6_KI270801v1_alt 870480 + 145730 146119 MLT2A1 477 + 5 477 45474 158 11 9 11 0 1 18 0 1 93 4 5 50 7 89 37 chain 155978 chr6_KI270801v1_alt 870480 + 146119 148059 HERVL-int 5654 + 0 1929 12005 28 6 0 119 0 2 63 0 1 72 21 0 54 4 13 64 0 11 221 8 0 766 0 1 89 0 1 215 2 1 208 chain 3615 chr6_KI270801v1_alt 870480 + 202871 202945 MER5A1 166 + 41 127 94316 23 6 19 23 7 6 15 chain 533017 chr6_KI270801v1_alt 870480 + 271405 277537 L1PA5 6144 + 0 6139 1708 36 2 0 485 3 0 6 0 4 279 0 1 408 1 0 280 0 1 495 16 9 708 0 1 159 15 5 293 1 0 344 0 22 1115 14 14 361 0 1 974 0 1 137 chain 32125 chr6_KI270801v1_alt 870480 + 312176 312602 MLT2A1 477 + 2 477 40249 70 0 4 66 0 1 26 1 5 141 1 2 6 1 0 61 0 40 53 chain 9471 chr6_KI270801v1_alt 870480 + 427817 428129 MER44A 345 + 36 345 71554 17 24 10 46 29 49 26 1 0 5 3 0 45 96 91 20 chain 22067 chr6_KI270801v1_alt 870480 + 507484 507745 L1PA5 6144 + 5874 6135 53737 261 chain 6671 chr6_KI270801v1_alt 870480 + 540624 540713 L1MA7 2200 + 1890 1977 78726 58 3 1 28 chain 17918 chr6_KI270801v1_alt 870480 + 547744 547964 L1PA7 6471 + 6248 6467 58732 61 1 0 158 chain 149643 chr6_KI270801v1_alt 870480 + 552063 554098 L1PA11 4918 + 2495 4507 12377 49 1 0 142 2 1 29 1 0 201 20 1 79 27 34 23 10 1 276 0 4 201 1 2 122 1 0 241 0 1 124 0 1 152 0 5 143 1 0 62 6 5 12 5 0 68 3 1 12 2 1 19 chain 19828 chr6_KI270801v1_alt 870480 + 577222 577462 L1PA7 6471 + 6230 6470 56642 240 chain 2439 chr6_KI270801v1_alt 870480 + 584286 584328 L1MA4 2864 + 2749 2792 103996 18 5 6 19 chain 99694 chr6_KI270801v1_alt 870480 + 621393 622531 L1PA5 6144 + 4834 5977 18334 1031 1 6 106 chain 14372 chr6_KI270801v1_alt 870480 + 622536 622703 L1PA5 6144 + 5977 6144 63082 167 chain 408457 chr6_KI270801v1_alt 870480 + 645659 650206 L1PA3long 6157 + 1593 6157 5040 1726 5 0 99 0 2 277 0 10 894 1 0 782 0 1 411 0 12 345 2 0 5 chain 80405 chr6_KI270801v1_alt 870480 + 674605 675596 L1PA7 6471 + 5407 6413 21543 214 0 3 77 1 2 138 0 1 445 0 3 17 9 16 90 chain 15224 chr6_KI270801v1_alt 870480 + 704960 705132 L1PA4 6152 + 5971 6143 62008 172 chain 21085 chr6_KI270801v1_alt 870480 + 758969 759294 THE1B 368 + 0 368 55023 44 0 15 69 10 38 10 2 1 19 22 23 149 chain 128949 chr6_KI270802v1_alt 75005 + 3856 5341 L1PA5 6144 + 4391 5877 14153 186 6 7 4 1 0 1195 0 1 93 chain 28636 chr6_KB021644v2_alt 185823 + 12887 13212 L1PA7 6471 + 6130 6456 43890 247 0 1 78 chain 26394 chr6_KB021644v2_alt 185823 + 26994 27275 AluYa5 310 + 30 310 47130 93 1 0 187 chain 3293 chr6_KB021644v2_alt 185823 + 94500 94535 MER57B2 428 + 9 44 97083 35 chain 39999 chr6_KB021644v2_alt 185823 + 146131 146664 MLT2A2 560 + 15 560 34661 41 0 1 123 1 0 121 7 0 91 0 1 6 3 14 76 0 1 39 0 6 25 chain 29524 chr6_KI270797v1_alt 197536 + 94407 94816 MER4A1 472 + 40 472 42579 186 5 26 78 0 1 4 1 0 56 12 14 67 chain 77451 chr6_KI270797v1_alt 197536 + 95782 96820 MER4-int 2692 + 1649 2692 22204 130 5 16 95 0 2 58 1 0 123 12 13 44 0 2 15 21 9 47 7 6 46 0 1 17 2 0 9 2 6 231 1 0 134 0 1 38 chain 19907 chr6_KI270797v1_alt 197536 + 135838 136194 THE1D 372 + 0 371 56520 56 0 1 54 0 1 48 75 87 36 8 10 47 1 0 31 chain 281781 chr6_KI270798v1_alt 271782 + 78042 81880 L1PA11 4918 + 34 4391 7379 7 0 5 32 10 7 27 0 1 4 2 0 5 6 6 40 14 13 32 2 0 5 2 1 58 0 2 71 15 5 46 6 10 318 0 1 145 0 6 40 0 1 486 2 1 11 4 8 115 0 6 45 1 0 9 6 10 200 4 1 122 0 30 84 0 14 63 3 1 76 7 4 32 2 4 6 0 9 26 0 5 203 21 0 50 1 0 4 6 2 283 18 476 30 6 20 28 11 19 518 0 1 37 1 0 87 0 1 135 0 5 38 0 4 95 10 0 65 chain 2437 chr6_KI270798v1_alt 271782 + 121328 121379 MER58C 217 + 63 111 104010 20 4 3 14 2 0 11 chain 235076 chr7_KI270804v1_alt 157952 + 3375 5931 L1PA3long 6157 + 3587 6143 8599 2556 chain 4915 chr7_KI270804v1_alt 157952 + 6790 6851 MER66B 489 + 386 447 86089 61 chain 8553 chr7_KI270804v1_alt 157952 + 14749 14859 MER30 238 + 131 238 73555 10 3 0 97 chain 26799 chr7_KI270804v1_alt 157952 + 86503 86816 L1PA5 6144 + 5832 6143 46543 164 0 2 128 1 0 9 3 0 8 chain 10731 chr7_KI270804v1_alt 157952 + 147391 147813 MER34C_ 573 + 35 509 68986 104 1 0 9 259 307 23 0 4 16 0 1 10 chain 22301 chr7_KI270809v1_alt 209586 + 39619 39862 L1P1 4361 + 3950 4192 53405 201 1 0 41 chain 45861 chr7_KI270809v1_alt 209586 + 108314 109195 MER41A 554 + 0 554 31127 164 332 0 302 0 5 83 chain 180349 chr7_KI270809v1_alt 209586 + 138250 140215 L1PA2 6032 + 4068 6032 10574 312 1 0 1652 chain 73934 chr7_KI270809v1_alt 209586 + 182213 183018 L1PA3long 6157 + 5351 6156 23109 805 chain 9351 chr7_KI270809v1_alt 209586 + 207155 207277 MER85 139 + 6 139 71814 84 0 10 10 0 1 28 chain 23629 chr7_KI270806v1_alt 158166 + 80653 80943 AluSq10 312 + 13 303 51383 290 chain 13467 chr7_GL383534v2_alt 119183 + 100583 100748 U1 164 + 0 164 64360 45 1 0 119 chain 5491 chr7_KI270803v1_alt 1111570 + 32361 32535 MER20 218 + 22 204 83276 56 4 0 7 1 0 4 78 91 24 chain 3856 chr7_KI270803v1_alt 1111570 + 60840 60912 MER58A 224 + 11 86 92430 16 0 1 7 14 16 35 chain 5541 chr7_KI270803v1_alt 1111570 + 60980 61154 MER20 218 + 22 204 83073 57 4 0 6 1 0 4 1 0 4 73 87 24 chain 36140 chr7_KI270803v1_alt 1111570 + 165242 165782 L1PA16 3655 + 2081 2651 37318 19 1 3 6 2 0 24 8 35 71 1 0 25 1 0 137 21 23 72 3 6 149 chain 4464 chr7_KI270803v1_alt 1111570 + 171678 171729 MER33 330 + 8 59 88530 51 chain 442717 chr7_KI270803v1_alt 1111570 + 171795 177348 L1PA7 6471 + 3 6470 4524 205 0 1 35 0 15 144 3 0 67 0 10 360 0 1 430 16 16 313 0 1 300 4 5 335 12 1 78 1 0 261 0 1 45 6 5 4 1 0 91 0 20 123 0 1 148 0 1 274 6 19 190 9 8 299 1 0 19 0 1 93 0 8 169 6 14 557 0 8 206 0 850 578 17 18 45 8 0 94 chain 3413 chr7_KI270803v1_alt 1111570 + 179588 179647 L1MA4 2864 + 2749 2806 95970 18 8 6 33 chain 20203 chr7_KI270803v1_alt 1111570 + 358347 358618 L1PA8 5853 + 5587 5853 56132 23 2 0 72 1 0 58 2 1 19 2 1 92 chain 110471 chr7_KI270803v1_alt 1111570 + 394311 395609 L1PA7 6471 + 5167 6464 17012 466 0 1 327 2 0 351 1 3 8 2 0 141 chain 27563 chr7_KI270803v1_alt 1111570 + 419181 419534 THE1A 353 + 0 353 45497 82 8 9 19 1 0 243 chain 2602 chr7_KI270803v1_alt 1111570 + 429544 429572 L1MA4 2864 + 2781 2809 102983 28 chain 28030 chr7_KI270803v1_alt 1111570 + 432399 432803 L1PA8 5853 + 5453 5853 44816 111 1 0 45 2 0 10 2 5 57 1 0 9 16 15 38 1 0 17 1 0 93 chain 17856 chr7_KI270803v1_alt 1111570 + 551541 551902 THE1D 372 + 0 372 58818 28 0 5 74 107 117 10 0 1 85 5 0 52 chain 76250 chr7_KI270803v1_alt 1111570 + 576523 577560 L1PA11 4918 + 3489 4508 22497 171 3 0 41 7 1 200 0 1 350 3 1 60 0 4 12 9 0 65 1 0 10 2 0 44 0 1 24 7 5 9 1 0 5 0 2 13 chain 108521 chr7_KI270803v1_alt 1111570 + 578657 579857 SVA_B 1603 + 41 1600 17249 632 0 358 24 0 1 544 chain 50807 chr7_KI270803v1_alt 1111570 + 639678 640276 L1PA7 6471 + 5862 6461 29279 434 1 2 163 chain 75779 chr7_KI270803v1_alt 1111570 + 654038 655002 L1PA10 4194 + 3181 4150 22638 73 1 0 4 0 1 127 0 5 9 0 2 21 0 1 692 10 7 27 chain 42759 chr7_KI270803v1_alt 1111570 + 665900 666434 HSMAR1 1287 + 747 1287 32911 430 1 0 56 0 3 16 0 4 31 chain 10378 chr7_KI270803v1_alt 1111570 + 670896 671069 MER2 342 + 142 336 69654 120 30 51 23 chain 70360 chr7_KI270803v1_alt 1111570 + 675961 676770 L1PA6 6164 + 5352 6161 23898 809 chain 3775 chr7_KI270803v1_alt 1111570 + 686003 686043 MLT1D 503 + 89 129 93026 40 chain 13218 chr7_KI270803v1_alt 1111570 + 708263 708581 MER41-int 2638 + 114 405 64749 46 39 24 29 4 1 17 38 28 32 33 34 80 chain 37913 chr7_KI270803v1_alt 1111570 + 711021 711524 MER41A 554 + 13 523 36127 131 2 1 4 0 1 25 0 1 261 0 3 31 10 13 39 chain 13844 chr7_KI270803v1_alt 1111570 + 725361 725531 MER75B 242 + 54 224 63803 170 chain 29398 chr7_KI270803v1_alt 1111570 + 736209 736660 L1P4a 3072 + 35 474 42740 12 1 0 21 2 0 21 13 12 146 9 0 29 1 0 152 6 10 15 1 0 13 1 0 8 chain 4350 chr7_KI270803v1_alt 1111570 + 747687 747736 L1MA5A 2387 + 2241 2290 89170 49 chain 15630 chr7_KI270803v1_alt 1111570 + 850229 850427 L1PA16 3655 + 3306 3503 61495 110 1 0 87 chain 28898 chr7_KI270803v1_alt 1111570 + 916751 917056 AluYa5 310 + 0 304 43480 132 1 0 172 chain 55035 chr7_KI270803v1_alt 1111570 + 981515 982261 MER4E1 777 + 0 777 27864 34 1 0 37 3 5 34 12 13 150 20 0 21 0 27 8 0 19 85 0 1 115 0 2 226 chain 34743 chr7_KI270803v1_alt 1111570 + 1016778 1017211 L1PA8 5853 + 5430 5853 38193 134 1 0 43 3 1 73 1 0 9 1 0 52 1 0 21 1 0 31 3 0 59 chain 4861 chr7_KI270803v1_alt 1111570 + 1047047 1047138 MSTD-int 1705 + 1591 1680 86368 40 22 20 29 chain 373630 chr7_KI270803v1_alt 1111570 + 1055410 1060142 L1PA8 5853 + 52 5853 5593 20 2 0 9 2 1 12 50 14 194 18 6 63 0 1 220 7 11 23 0 4 357 0 3 68 13 10 52 3 6 13 0 1 344 0 2 40 1 0 145 1 0 529 1 0 526 14 1098 289 0 1 171 1 0 49 1 0 159 31 60 456 0 2 71 3 4 478 4 3 41 2 0 70 2 1 17 1 0 48 1 0 16 2 1 92 chain 12695 chr7_KI270803v1_alt 1111570 + 1086466 1086605 SVA_E 1901 + 1762 1901 65627 139 chain 2840 chr7_KI270803v1_alt 1111570 + 1095644 1095674 L1PA4 6152 - 1569 1599 99501 30 chain 61750 chr7_KI270803v1_alt 1111570 + 1095674 1096353 L1PA4 6152 + 5290 5969 25927 679 chain 339875 chr7_KI270803v1_alt 1111570 + 1101357 1106534 L1PB1 5432 + 41 5281 6073 98 47 32 230 7 5 127 1 0 4 0 1 6 2 1 13 8 9 199 12 12 33 8 0 440 4 2 44 0 1 86 6 8 13 0 8 131 0 4 291 7 9 54 0 1 23 3 1 264 327 0 304 11 6 109 12 21 29 10 8 152 1 0 21 5 4 161 0 1 4 1 0 200 6 5 143 3 0 234 0 12 115 0 1 11 3 0 179 0 1 142 8 13 145 1 2 132 0 1 138 230 618 13 1 2 29 1 0 9 1 0 3 2 0 9 7 5 47 2 1 9 3 6 14 0 2 29 chain 105049 chr7_KI270803v1_alt 1111570 + 1109033 1110482 L1PB 1623 + 98 1524 17680 4 1 0 10 1 0 5 1 0 54 4 1 16 1 0 4 2 0 77 1 0 127 1 0 20 0 2 65 2 1 83 1 0 243 4 3 365 1 0 128 0 1 139 1 0 7 2 1 30 1 0 5 3 0 12 5 1 14 1 0 8 chain 18559 chr7_KI270803v1_alt 1111570 + 1111348 1111570 L1P1 4361 + 2 220 58038 178 4 0 40 chain 20761 chr7_KI270808v1_alt 271455 + 18954 19265 MSTA 426 + 73 426 55418 35 16 40 88 6 4 56 1 21 109 chain 22500 chr7_KI270808v1_alt 271455 + 69296 69649 THE1B 368 + 7 368 53120 101 7 9 59 0 2 7 16 8 8 0 1 8 0 4 14 7 15 63 5 4 58 chain 21456 chr7_KI270808v1_alt 271455 + 87629 88267 THE1D 372 + 0 372 54574 67 0 1 98 51 80 87 297 1 38 chain 26361 chr7_KI270808v1_alt 271455 + 142187 142548 THE1B 368 + 0 368 47177 128 0 3 38 1 0 29 0 3 8 1 5 15 6 5 8 1 0 126 chain 123471 chr7_KI270808v1_alt 271455 + 148762 150241 LTR12C 1709 + 0 1709 14942 212 0 9 88 0 1 4 1 0 336 0 119 58 11 10 274 1 0 5 3 1 107 0 4 168 0 102 211 chain 31954 chr7_KI270808v1_alt 271455 + 169447 171296 MER41A 554 + 0 546 40376 72 0 89 34 0 1 112 8 6 122 1398 10 47 3 0 53 chain 27617 chr7_KI270808v1_alt 271455 + 170855 171192 THE1B 368 + 16 368 45437 28 0 15 60 0 1 49 1 0 199 chain 108562 chr7_KI270808v1_alt 271455 + 209822 211148 LTR12C 1709 + 0 1709 17240 260 1 2 388 0 278 56 0 1 127 1 0 4 4 2 106 0 4 212 0 1 22 43 13 40 1 132 61 chain 189924 chr7_KI270808v1_alt 271455 + 211148 214807 L1PA7 6471 + 1818 6458 10123 180 0 1 327 3 4 199 323 0 37 0 2 67 1 4 81 2 0 166 0 4 511 815 2228 75 1 2 304 0 2 136 122 0 132 8 7 18 17 19 134 chain 23490 chr7_KI270808v1_alt 271455 + 224194 224523 L1MA4 2864 + 1860 2190 51601 49 10 15 88 3 1 14 1 0 91 1 0 72 chain 3699 chr7_KI270808v1_alt 271455 + 236743 236789 LTR37A 408 + 351 397 93615 46 chain 74035 chr7_KI270808v1_alt 271455 + 245830 246824 MER11A 1151 + 8 1135 23083 77 0 91 54 0 4 60 4 0 149 0 1 94 0 1 144 5 7 53 0 4 60 2 3 25 17 48 37 0 1 60 13 14 140 chain 159086 chr7_KI270807v1_alt 126434 + 66624 68605 L1PA2 6032 + 4053 6032 11800 147 8 0 313 1 0 667 0 7 845 chain 122182 chr7_KI270805v1_alt 209988 + 95478 97040 THE1B-int 1605 + 0 1600 15165 25 3 0 5 1 6 374 11 48 352 2 1 789 chain 9385 chr7_KI270805v1_alt 209988 + 198160 198722 LTR12D 1347 + 568 979 71734 16 28 24 44 19 54 46 254 175 28 103 0 24 chain 1057 chr7_KI270805v1_alt 209988 + 198471 198514 LTR12D 1347 + 1134 1177 90434 43 chain 3084 chr8_KI270818v1_alt 145606 + 75713 75746 Harlequin-int 5206 + 2430 2463 98954 33 chain 4179 chr8_KI270821v1_alt 985506 + 4166 4234 MSTD 398 + 2 68 90262 12 8 6 48 chain 26143 chr8_KI270821v1_alt 985506 + 20088 20429 THE1A 353 + 0 340 47508 103 8 7 230 chain 40598 chr8_KI270821v1_alt 985506 + 390054 390586 MLT2A2 560 + 0 548 34225 47 0 2 145 1 4 198 6 17 135 chain 32706 chr8_KI270821v1_alt 985506 + 404818 405447 LTR71B 605 + 0 455 39755 69 1 0 65 14 18 195 191 14 94 chain 7333 chr8_KI270821v1_alt 985506 + 405163 405251 LTR71B 605 + 361 449 76559 88 chain 4753 chr8_KI270821v1_alt 985506 + 405291 405348 LTR71B 605 + 394 451 86948 57 chain 17505 chr8_KI270821v1_alt 985506 + 425171 425413 L1PA8 5853 + 5614 5853 59239 64 2 1 61 2 1 19 2 1 92 chain 498708 chr8_KI270821v1_alt 985506 + 517889 523988 L1PA7 6471 + 3 6147 3170 19 0 1 389 1 2 89 1 0 78 0 2 100 0 1 564 0 6 17 0 19 205 0 3 132 0 1 1001 15 0 756 0 4 10 11 15 26 1 0 18 21 25 17 1 0 1990 1 2 121 4 0 6 0 8 63 0 2 8 1 0 51 0 11 382 chain 5672 chr8_KI270821v1_alt 985506 + 570987 571246 L1MDa 1598 + 352 604 82456 29 145 146 22 1 0 15 4 3 30 6 0 7 chain 39679 chr8_KI270821v1_alt 985506 + 571381 571914 MLT2A2 560 + 9 559 34905 67 2 0 5 0 2 108 0 3 9 0 1 166 10 11 11 0 1 9 0 11 146 chain 524462 chr8_KI270821v1_alt 985506 + 579257 585170 L1PA3long 6157 + 0 6156 2071 152 0 1 211 0 1 186 0 1 216 8 136 322 0 1 2065 23 0 601 0 134 2129 chain 3161 chr8_KI270821v1_alt 985506 + 646764 646800 MER45A 178 + 91 127 98273 36 chain 22979 chr8_KI270821v1_alt 985506 + 708636 708916 AluSp 311 + 5 286 52394 265 0 1 15 chain 33544 chr8_KI270821v1_alt 985506 + 710194 710625 MLT2A1 477 + 0 473 39047 140 0 1 28 0 4 151 1 0 61 3 41 47 chain 25077 chr8_KI270821v1_alt 985506 + 751808 752166 THE1B 368 + 7 368 49158 94 1 0 68 1 0 29 0 3 8 1 5 14 23 21 119 chain 3138 chr8_KI270821v1_alt 985506 + 757443 757476 MER31B 477 + 163 196 98483 33 chain 24481 chr8_KI270821v1_alt 985506 + 896267 896623 LTR12C 1709 + 1284 1709 50063 112 0 102 114 14 13 20 32 0 64 chain 52079 chr8_KI270821v1_alt 985506 + 969219 969809 L1P1 4361 + 2277 2867 28851 590 chain 183142 chr8_KI270813v1_alt 300230 + 17130 19546 L1PA8A 6298 + 3885 6290 10432 19 1 2 195 0 1 515 5 0 749 0 1 117 2 0 23 5 6 59 5 4 506 0 1 5 19 9 88 0 1 55 8 9 40 chain 43691 chr8_KI270813v1_alt 300230 + 42971 43569 PRIMA4_LTR 623 + 0 623 32326 169 6 29 58 9 10 39 8 7 79 0 1 43 1 2 186 chain 38817 chr8_KI270813v1_alt 300230 + 85345 85796 LTR7 482 + 0 482 35489 261 0 31 190 chain 267689 chr8_KI270813v1_alt 300230 + 85798 89512 HERVH-int 3825 + 0 3816 7771 76 0 1 135 0 11 309 5 0 38 1 0 10 1 0 24 1 14 13 3 0 5 21 20 20 42 0 22 86 1 21 21 0 9 2 1 49 1 0 452 15 0 210 0 1 239 8 35 136 0 1 581 0 3 308 0 1 4 77 76 7 0 1 17 1 0 5 1 2 118 138 353 263 3 8 216 chain 39405 chr8_KI270813v1_alt 300230 + 90774 91227 LTR7 482 + 0 482 35077 56 2 0 209 0 31 186 chain 5074 chr8_KI270813v1_alt 300230 + 95346 95418 MADE1 96 + 3 91 85282 42 1 17 29 chain 23809 chr8_KI270813v1_alt 300230 + 164991 165271 L1PA5 6144 + 5878 6144 51088 119 14 0 147 chain 48043 chr8_KI270813v1_alt 300230 + 174698 175311 PABL_A 660 + 2 660 30279 224 6 7 19 8 52 356 chain 85859 chr8_KI270813v1_alt 300230 + 230500 231543 LTR5A 1029 + 0 1029 20478 141 5 14 610 30 7 257 chain 86242 chr8_KI270813v1_alt 300230 + 238155 239188 LTR5A 1029 + 0 1029 20373 141 5 14 614 13 0 260 chain 86242 chr8_KI270813v1_alt 300230 + 245805 246838 LTR5A 1029 + 0 1029 20372 141 5 14 614 13 0 260 chain 86156 chr8_KI270813v1_alt 300230 + 253451 254483 LTR5A 1029 + 0 1029 20397 141 5 14 495 0 1 118 13 0 260 chain 86138 chr8_KI270813v1_alt 300230 + 261100 262132 LTR5A 1029 + 0 1029 20405 141 5 14 495 0 1 118 13 0 260 chain 41056 chr8_KI270813v1_alt 300230 + 268745 269270 LTR5A 1029 + 0 525 33930 129 14 0 12 3 16 27 0 1 340 chain 329341 chr8_KI270813v1_alt 300230 + 270661 274703 HERVE-int 4064 + 11 4064 6226 802 4 1 259 8 7 53 135 135 265 1 2 581 0 1 94 3 0 503 0 6 676 0 10 45 0 1 25 1 0 587 chain 84135 chr8_KI270813v1_alt 300230 + 281002 282018 LTR5A 1029 + 0 1029 20773 134 0 13 882 chain 21716 chr8_KI270822v1_alt 624492 + 27041 27294 L1PA7 6471 + 6218 6470 54211 248 1 0 4 chain 3356 chr8_KI270822v1_alt 624492 + 27297 27345 MLT-int 841 + 188 236 96537 13 1 0 4 0 1 30 chain 133597 chr8_KI270822v1_alt 624492 + 85612 87215 LTR12C 1709 + 0 1709 13683 428 8 9 27 18 4 182 0 119 68 1 0 274 10 7 106 0 4 481 chain 7320 chr8_KI270822v1_alt 624492 + 151336 151425 MLT1B 390 + 248 337 76599 89 chain 10379 chr8_KI270822v1_alt 624492 + 180409 180555 Tigger3b 1229 + 39 186 69651 37 6 7 103 chain 33224 chr8_KI270822v1_alt 624492 + 214578 214976 L1PA6 6164 + 5758 6156 39326 244 9 9 145 chain 6372 chr8_KI270822v1_alt 624492 + 248703 248777 MER45B 1037 + 776 850 79769 74 chain 37803 chr8_KI270822v1_alt 624492 + 254557 255079 MLT2A2 560 + 9 560 36204 114 13 0 57 1 0 128 6 38 56 0 11 147 chain 15150 chr8_KI270822v1_alt 624492 + 279503 279842 L1PB1 5432 + 5114 5421 62097 20 1 0 12 1 0 10 2 0 3 2 0 9 2 0 52 2 1 15 1 0 37 48 35 18 3 1 5 1 0 14 2 0 24 1 0 23 1 0 11 2 1 10 1 0 6 chain 36902 chr8_KI270822v1_alt 624492 + 286074 286559 LTR15 485 + 0 482 36809 76 6 0 9 1 7 258 4 3 18 6 8 57 4 0 46 chain 74046 chr8_KI270822v1_alt 624492 + 329022 330051 MER11A 1151 + 0 1151 23079 65 1 100 43 0 1 21 1 0 64 4 0 149 0 1 94 0 1 31 1 0 6 12 0 108 5 6 118 0 1 12 1 0 3 15 0 11 8 1 11 0 21 17 0 36 14 1 2 44 6 7 163 chain 70481 chr8_KI270822v1_alt 624492 + 340433 341217 L1PA3long 6157 + 5365 6149 23871 784 chain 25714 chr8_KI270822v1_alt 624492 + 451483 451764 AluYa5 310 + 33 310 48146 60 4 0 217 chain 195125 chr8_KI270822v1_alt 624492 + 462781 465072 L1PA6 6164 + 3868 6161 9882 36 0 2 446 0 3 72 0 1 1106 0 1 365 0 1 250 6 0 10 chain 29722 chr8_KI270822v1_alt 624492 + 485984 486390 L1P2 5180 + 2 405 42343 148 1 0 43 12 10 44 14 13 14 0 1 130 chain 40810 chr8_KI270822v1_alt 624492 + 487214 487784 THE1B-int 1605 + 0 636 34088 163 7 9 95 4 8 121 1 65 48 1 0 21 6 3 103 chain 24332 chr8_KI270822v1_alt 624492 + 495108 495439 L1PA8 5853 + 5529 5853 50282 35 1 0 45 2 0 70 4 3 16 1 0 42 2 1 19 1 0 93 chain 3786 chr8_KI270822v1_alt 624492 + 504407 504450 L1PBa 3878 + 1565 1608 92947 43 chain 5136 chr8_KI270822v1_alt 624492 + 506748 506825 MADE1 96 + 2 96 84984 33 3 20 41 chain 3599 chr8_KI270822v1_alt 624492 + 544487 544562 MER21-int 1364 + 826 898 94437 28 12 14 24 5 0 6 chain 36203 chr8_KI270822v1_alt 624492 + 545065 545526 LTR2 463 + 0 462 37267 359 15 16 87 chain 362311 chr8_KI270822v1_alt 624492 + 560383 564562 L1PA5 6144 + 1945 6143 5778 238 2 1 129 2 1 180 0 1 661 0 1 7 3 0 6 1 0 319 0 11 829 0 3 547 3 8 75 0 2 1025 7 9 145 chain 42441 chr8_KI270822v1_alt 624492 + 621020 621531 MER9a3 513 + 0 513 33101 39 0 1 234 9 10 229 chain 101732 chr8_KI270822v1_alt 624492 + 622889 624459 HERVK9-int 4720 + 58 1494 18095 66 1 0 8 1 0 30 1 0 133 0 1 134 1 0 115 320 0 132 0 2 386 2 3 110 0 185 31 0 1 99 chain 7291 chr8_KI270814v1_alt 141812 + 10 113 L1PA15-16 3068 + 373 477 76693 23 8 9 72 chain 25911 chr8_KI270814v1_alt 141812 + 15566 16009 MER1A 529 + 65 516 47844 13 3 0 5 47 52 79 1 0 3 7 0 153 0 3 27 1 7 49 12 17 43 chain 3513 chr8_KI270814v1_alt 141812 + 74572 74613 Ricksha_c 1012 + 89 130 95146 41 chain 58806 chr8_KI270810v1_alt 374415 + 75654 76346 L1PA5 6144 + 5167 5838 26737 502 0 2 72 23 0 95 chain 19257 chr8_KI270810v1_alt 374415 + 106336 106557 L1PA7 6471 + 6248 6466 57283 209 3 0 9 chain 548087 chr8_KI270810v1_alt 374415 + 159627 165649 L1PA2 6032 + 0 6030 857 696 0 7 215 1 0 876 0 5 392 1 0 1807 0 2 1025 4 0 1005 chain 539203 chr8_KI270810v1_alt 374415 + 193271 199292 L1PA3long 6157 + 0 6152 1388 152 0 1 109 9 0 103 0 1 402 8 136 29 1 5 1637 2 0 689 0 4 1224 0 2 149 0 1 484 0 1 1023 chain 500679 chr8_KI270810v1_alt 374415 + 208522 214391 L1PA5 6144 + 3 5877 3104 557 10 9 47 0 1 83 7 0 535 1 2 141 19 16 1801 2 1 414 0 1 607 5 6 123 0 4 705 0 9 812 chain 6941 chr8_KI270810v1_alt 374415 + 214714 214844 L1MA3 4352 + 3901 4035 77804 5 1 0 33 28 33 63 chain 9783 chr8_KI270810v1_alt 374415 + 217607 217778 MER30 238 + 47 235 70861 51 10 0 9 1 24 21 0 6 41 11 8 15 0 1 12 chain 4401 chr8_KI270810v1_alt 374415 + 240723 240824 MER58A 224 + 115 221 88883 4 1 0 16 32 38 48 chain 542737 chr8_KI270810v1_alt 374415 + 249907 256049 L1PA4 6152 + 0 6152 1158 950 0 4 153 0 3 1203 1 0 707 0 1 162 1 0 2855 0 1 97 0 3 13 chain 5861 chr8_KI270810v1_alt 374415 + 268470 268550 MADE1 96 + 0 96 81646 32 1 17 47 chain 6723 chr8_KI270810v1_alt 374415 + 324271 324365 MSTA 426 + 3 98 78562 20 3 4 71 chain 29649 chr8_KI270810v1_alt 374415 + 363133 363543 LTR7 482 + 0 482 42431 68 9 47 110 7 8 16 1 0 15 0 31 10 0 3 174 chain 312525 chr8_KI270810v1_alt 374415 + 363545 367328 HERVH-int 3825 + 0 3825 6558 279 0 2 52 2 1 199 1 0 8 1 0 5 28 58 12 1 0 15 21 18 48 1 0 82 1 0 419 1 2 800 0 4 181 0 1 24 0 2 1065 0 4 274 0 7 263 chain 5309 chr8_KI270810v1_alt 374415 + 374235 374339 L1MC2 1988 + 1775 1876 84154 40 9 10 22 11 7 22 chain 3953 chr8_KI270819v1_alt 133535 + 74119 74165 MER30 238 + 34 80 91744 46 chain 81582 chr8_KI270817v1_alt 158983 + 50141 51099 LTR13_ 950 + 0 950 21316 167 0 1 177 0 1 261 14 4 339 chain 21279 chr8_KI270817v1_alt 158983 + 93655 93900 AluY 311 + 57 303 54792 75 0 1 170 chain 14365 chr8_KI270817v1_alt 158983 + 101557 101743 L1PA8A 6298 + 6079 6268 63089 14 6 9 166 chain 45594 chr8_KI270817v1_alt 158983 + 139446 140039 LTR71B 605 + 0 605 31264 112 22 35 263 5 4 191 chain 14766 chr8_KI270816v1_alt 305841 + 32149 32362 7SK 245 + 0 245 62576 131 1 2 23 22 53 36 chain 34073 chr8_KI270816v1_alt 305841 + 35726 36167 LTR10F 562 + 0 562 38653 76 0 5 35 0 115 99 0 1 231 chain 37397 chr8_KI270816v1_alt 305841 + 37614 38379 LTR2C 499 + 3 468 36475 188 302 1 235 8 9 32 chain 7816 chr8_KI270816v1_alt 305841 + 74930 75022 MLT1D-int 1367 + 1163 1255 75326 92 chain 3689 chr8_KI270816v1_alt 305841 + 151850 151890 L1MB3 1562 + 870 910 93682 40 chain 268862 chr8_KI270816v1_alt 305841 + 152514 156548 Harlequin-int 5206 + 1675 5101 7736 167 1 2 15 1 2 18 0 1 170 0 2 310 0 1 978 0 1 132 9 6 332 318 10 143 0 2 208 311 0 324 0 4 32 0 8 7 10 1 47 81 81 162 8 9 93 0 1 157 chain 34834 chr8_KI270816v1_alt 305841 + 156988 157434 LTR2 463 + 0 463 38132 188 0 15 159 12 13 59 1 2 27 chain 78541 chr8_KI270816v1_alt 305841 + 160161 161087 LTR13A 966 + 12 966 21968 487 0 5 113 11 34 315 chain 23404 chr8_KI270816v1_alt 305841 + 235235 235526 AluSp 311 + 6 298 51750 169 1 2 121 chain 26203 chr8_KI270815v1_alt 132244 + 11503 11873 THE1B 368 + 0 368 47413 13 2 0 23 1 6 130 2 1 24 1 0 91 2 0 13 0 1 4 8 6 56 chain 149644 chr8_KI270815v1_alt 132244 + 19993 23374 L1PA14 3548 + 1163 3456 12375 207 1 2 37 2 1 64 4 6 104 606 0 104 293 0 288 10 6 79 1 0 4 0 1 152 10 11 82 1 2 16 1 2 28 4 9 167 2 1 16 9 0 7 0 4 28 1 0 9 1 0 88 1 0 242 0 1 7 347 22 23 0 4 13 2 0 5 2 0 65 20 162 100 18 13 34 4 2 10 23 26 39 chain 6030 chr8_KI270815v1_alt 132244 + 25876 26656 MER52C 1267 + 348 997 80962 45 680 550 35 1 0 19 chain 2228 chr8_KI270815v1_alt 132244 + 26729 26752 MER52C 1267 + 881 904 105173 23 chain 127240 chr8_KI270815v1_alt 132244 + 36116 37673 THE1A-int 1579 + 0 1579 14393 12 0 3 149 0 2 26 0 3 68 2 0 727 0 13 186 0 2 69 0 1 318 chain 25353 chr8_KI270815v1_alt 132244 + 112029 112345 AluY 311 + 0 307 48699 41 4 0 84 4 5 110 6 0 67 chain 92495 chr9_GL383539v1_alt 162988 + 67942 69124 L1PA10 4194 + 2959 4150 19272 91 3 0 146 0 1 156 0 1 82 0 5 209 0 4 314 1 2 78 4 7 61 8 5 29 chain 10924 chr9_GL383539v1_alt 162988 + 133355 133562 MER2 342 + 136 342 68659 112 55 54 40 chain 403310 chr9_GL383539v1_alt 162988 + 134933 140554 L1PA8A 6298 + 77 6291 5113 24 3 0 18 21 12 18 1 0 7 3 2 12 1 0 7 1 0 12 2 0 15 7 4 13 1 0 8 3 2 4 1 0 9 18 12 10 2 0 14 2 5 12 12 11 22 8 0 78 0 2 10 3 2 9 6 4 80 44 42 247 6 2 205 1 26 45 2 1 17 3 13 13 0 3 6 3 1 13 0 1 52 0 3 212 0 1 11 0 1 202 0 1 117 0 12 223 41 529 69 0 1 34 0 3 137 0 4 190 0 1 12 1 5 57 0 1 177 1 0 15 0 1 145 1 0 39 1 0 5 6 10 22 0 14 398 10 12 13 6 10 113 0 1 23 0 1 185 0 16 82 9 2 43 0 1 235 0 2 293 14 0 68 9 0 217 4 1 142 0 1 5 1 0 85 0 2 6 0 1 55 0 4 12 1 0 4 0 4 16 3 62 107 1 0 178 0 5 307 26 25 98 chain 4194 chr9_GL383540v1_alt 71551 + 54138 54220 MIR 256 + 52 133 90168 27 25 24 30 chain 3076 chr9_GL383541v1_alt 171286 + 32708 32819 MER1A 529 - 255 367 99006 10 2 0 17 41 44 4 1 0 8 1 0 16 0 2 11 chain 66472 chr9_GL383542v1_alt 60032 + 42481 43223 L1PA5 6144 + 3703 4445 24833 742 chain 39036 chr9_GL383542v1_alt 60032 + 52053 52517 LTR2 463 + 0 463 35326 356 12 11 96 chain 26509 chr9_KI270823v1_alt 439082 + 14385 14707 L1PA7 6471 + 6134 6466 46971 263 1 11 58 chain 23027 chr9_KI270823v1_alt 439082 + 33468 33801 THE1B 368 + 0 341 52318 44 5 20 101 8 7 30 1 0 20 4 0 65 2 1 53 chain 178061 chr9_KI270823v1_alt 439082 + 36306 38211 L1HS 6032 + 4127 6032 10675 1905 chain 4332 chr9_KI270823v1_alt 439082 + 74120 74218 MER58A 224 + 68 183 89281 16 37 54 45 chain 23415 chr9_KI270823v1_alt 439082 + 95136 95435 L1PB1 5432 + 4387 4673 51733 239 13 0 47 chain 43289 chr9_KI270823v1_alt 439082 + 167417 168303 MER41-int 2638 + 2059 2634 32584 28 1 0 18 0 1 218 0 9 47 315 0 169 9 4 81 chain 82952 chr9_KI270823v1_alt 439082 + 194648 195617 L1PA6 6164 + 5171 6156 21027 144 1 0 431 0 14 248 0 1 8 0 2 137 chain 138389 chr9_KI270823v1_alt 439082 + 229223 230914 HERVL-int 5654 + 3932 5654 13229 12 0 4 104 6 4 218 0 19 785 5 2 353 0 7 61 0 6 147 chain 30283 chr9_KI270823v1_alt 439082 + 230914 231292 MLT2A1 477 + 0 383 41779 130 0 1 37 0 4 211 chain 9772 chr9_KI270823v1_alt 439082 + 276119 276307 MER6A 605 + 345 538 70880 13 0 7 60 47 45 68 chain 56980 chr9_KI270823v1_alt 439082 + 313696 314370 L1PA7 6471 + 5799 6470 27270 660 2 0 7 1 0 4 chain 27835 chr9_KI270823v1_alt 439082 + 319116 319438 L1PA5 6144 + 5793 6117 45129 194 2 4 126 chain 556567 chr9_KI270823v1_alt 439082 + 342003 348159 L1PA3long 6157 + 4 6157 326 301 4 1 1518 13 0 383 0 2 1062 0 2 673 0 1 153 7 8 1202 0 4 513 0 3 327 chain 24708 chr9_KI270823v1_alt 439082 + 367360 367662 AluY 311 + 3 305 49713 120 1 0 9 1 2 171 chain 2854 chr9_KI270823v1_alt 439082 + 371303 371348 MamRep4096 390 + 165 211 101224 17 0 4 13 3 0 12 chain 3815 chr9_KI270823v1_alt 439082 + 401666 401716 MER58D 378 + 328 378 92746 50 chain 545600 chr10_GL383545v1_alt 179254 + 13599 19716 L1PA4 6152 + 6 6146 992 569 0 4 2252 0 1 356 0 4 58 0 3 306 4 3 1045 0 1 545 0 5 143 0 2 793 7 11 39 chain 16129 chr10_GL383545v1_alt 179254 + 133074 133433 THE1B 368 + 0 368 60854 78 59 64 35 61 66 63 7 6 56 chain 19384 chr10_KI270824v1_alt 181496 + 22681 22990 THE1B 368 + 6 341 57149 33 1 16 114 1 0 28 1 0 4 35 48 92 chain 74195 chr10_KI270824v1_alt 181496 + 31406 32236 L1PA3long 6157 + 3670 4500 23033 830 chain 129718 chr10_KI270824v1_alt 181496 + 34277 35764 SVA_D 2077 + 0 2065 14071 12 17 0 29 1 26 624 0 40 55 0 40 86 0 489 43 0 1 620 chain 29634 chr10_KI270824v1_alt 181496 + 79714 80069 L1PA5 6144 + 5796 6141 42448 95 1 0 236 10 1 13 chain 25185 chr10_KI270824v1_alt 181496 + 137326 137644 THE1D-int 1627 + 25 344 48978 6 0 1 312 chain 123405 chr10_GL383546v1_alt 309802 + 84092 85753 SVA_C 1631 + 41 1624 14961 337 0 4 75 0 39 44 40 0 187 0 40 85 4 0 58 128 0 8 1 0 32 2 0 14 12 11 25 12 10 8 1 0 233 3 1 221 0 20 131 chain 6835 chr10_GL383546v1_alt 309802 + 84922 85026 SVA_C 1631 + 955 1102 67745 9 27 71 60 1 0 7 chain 39450 chr10_GL383546v1_alt 309802 + 86748 87226 LTR15 485 + 0 485 35044 218 4 10 91 4 5 161 chain 497290 chr10_GL383546v1_alt 309802 + 90569 96712 L1PA6 6164 + 0 6158 3230 184 11 12 252 9 1 12 10 0 108 1 0 218 0 17 262 2 1 6 0 1 16 0 1 5 1 0 23 0 1 4 1 0 129 0 1 1070 2 3 602 1 0 4 0 1 233 1 7 22 6 7 13 0 1 505 2 3 163 0 1 327 1 3 430 7 2 642 0 4 15 0 4 88 1 0 754 chain 25765 chr10_GL383546v1_alt 309802 + 98931 99272 MER4A1 472 + 0 346 48076 74 6 7 48 0 4 213 chain 27674 chr10_GL383546v1_alt 309802 + 103743 104071 LTR3 431 + 94 423 45363 250 0 1 78 chain 35291 chr10_GL383546v1_alt 309802 + 111227 111666 LTR3 431 + 0 424 37830 168 19 4 252 chain 42455 chr10_GL383546v1_alt 309802 + 112333 112970 PABL_A 660 + 31 660 33092 370 67 57 37 0 1 69 5 4 4 0 1 42 6 7 37 chain 31299 chr10_GL383546v1_alt 309802 + 161282 161722 MLT2A1 477 + 0 470 40898 169 4 1 9 8 6 108 1 2 87 18 52 36 chain 181823 chr10_GL383546v1_alt 309802 + 161725 166216 HERVL-int 5654 + 0 4508 4319 79 0 1 69 15 10 114 0 9 61 0 3 299 1 0 17 3 1 127 0 1 333 1 0 51 0 1 212 0 1 4 5 10 345 2 3 897 0 2 36 15 16 1703 0 1 102 chain 474878 chr10_GL383546v1_alt 309802 + 166239 171756 L1PA4 6152 + 6 6152 3748 868 0 1 565 4 5 49 0 1 1713 0 1 384 35 657 101 0 4 26 1 0 1771 chain 46276 chr10_GL383546v1_alt 309802 + 171758 172901 HERVL-int 5654 + 4508 5654 4319 168 1 2 547 1 0 136 0 3 290 chain 32680 chr10_GL383546v1_alt 309802 + 172901 173346 MLT2A1 477 + 0 477 39782 169 5 2 122 0 1 91 4 0 6 10 48 38 chain 372388 chr10_GL383546v1_alt 309802 + 182283 186619 L1P1 4361 + 2 4341 5614 419 0 1 280 12 5 15 0 7 1581 0 4 371 0 1 997 0 1 133 1 0 333 1 0 155 2 1 22 2 1 12 chain 11987 chr10_GL383546v1_alt 309802 + 187371 187755 SVA_A 1864 + 859 1043 53423 17 3 0 10 1 0 25 76 0 74 43 0 21 77 0 37 chain 2250 chr10_GL383546v1_alt 309802 + 187427 187476 SVA_A 1864 + 1096 1143 57544 2 7 5 40 chain 2663 chr10_GL383546v1_alt 309802 + 187660 187718 SVA_A 1864 + 1206 1264 57544 58 chain 86094 chr10_GL383546v1_alt 309802 + 187755 190035 SVA_A 1864 + 403 1862 20417 100 0 340 43 1 0 22 1119 12 174 13 10 24 40 0 6 3 0 11 2 1 17 4 1 110 8 5 583 chain 5026 chr10_GL383546v1_alt 309802 + 187924 188085 SVA_A 1864 + 1130 1171 53423 14 120 0 27 chain 3796 chr10_GL383546v1_alt 309802 + 188646 188687 SVA_F 1814 + 620 661 92879 41 chain 3897 chr10_GL383546v1_alt 309802 + 188981 189040 SVA_A 1864 + 822 884 92153 31 1 4 27 chain 45226 chr10_GL383546v1_alt 309802 + 190048 190592 L1PA4 6152 + 4641 5155 31465 277 30 0 237 chain 269140 chr10_GL383546v1_alt 309802 + 199587 202994 L1P2 5180 + 2 3398 7730 147 2 1 39 6 5 53 6 5 263 1 0 48 1 0 224 1 0 6 2 1 190 0 1 82 9 10 160 1 0 485 1 0 458 1 2 24 0 2 62 0 13 36 22 0 864 1 0 31 1 2 41 1 4 22 1 0 115 chain 472266 chr10_GL383546v1_alt 309802 + 203004 208995 L1PA6 6164 + 2 6159 3804 105 91 78 14 0 1 309 2 1 35 10 9 107 0 3 22 12 5 57 0 128 59 0 26 216 120 130 38 17 27 1818 0 2 238 1 3 1879 0 4 172 0 2 669 chain 522268 chr10_GL383546v1_alt 309802 + 228656 236448 L1PA5 6144 + 3 6144 2167 150 10 26 207 0 95 484 3 0 62 0 1 185 2 1 1061 1 0 34 0 4 942 1761 0 418 1 0 9 0 1 577 1 0 294 0 1 1577 2 1 11 chain 141587 chr10_GL383546v1_alt 309802 + 231884 233553 SVA_D 2077 + 0 2077 12970 19 5 0 591 13 11 65 0 40 84 24 0 80 0 396 29 0 1 30 2 0 39 12 16 676 chain 218061 chr10_GL383546v1_alt 309802 + 253871 256312 L1PA5 6144 + 3579 6030 9092 768 0 4 203 0 1 19 0 1 712 0 3 4 0 1 735 chain 8934 chr10_GL383546v1_alt 309802 + 256315 256418 L1PA5 6144 + 6039 6142 72707 103 chain 44891 chr10_GL383546v1_alt 309802 + 278231 278848 LTR10E 629 + 0 629 31645 18 25 41 105 0 2 130 2 1 27 12 11 44 1 0 189 2 0 55 1 0 6 chain 2495 chr10_KI270825v1_alt 188315 + 96894 96971 Tigger3c 601 + 0 75 103673 18 38 36 21 chain 14228 chr10_KI270825v1_alt 188315 + 142996 143155 THE1A-int 1579 + 1420 1579 63297 159 chain 20469 chr10_KI270825v1_alt 188315 + 147947 148205 L1PA7 6471 + 6209 6469 55813 104 0 1 139 4 5 11 chain 4744 chr11_KI270832v1_alt 210133 + 43486 43540 Tigger1 2417 + 2083 2137 86994 54 chain 106286 chr11_KI270832v1_alt 210133 + 46514 47814 SVA_A 1864 + 26 1856 17526 487 1 565 68 1 0 39 40 0 32 5 8 346 0 2 276 0 2 5 chain 76868 chr11_KI270832v1_alt 210133 + 103323 104260 LTR13A 966 + 0 966 22357 76 0 4 74 1 4 299 1 0 42 0 5 227 0 4 122 1 0 8 0 4 11 5 17 47 1 0 22 chain 4267 chr11_KI270830v1_alt 177092 + 97212 97294 L1MD1 2063 + 1564 1638 89723 35 1 8 7 15 0 24 chain 73534 chr11_KI270830v1_alt 177092 + 125905 126904 LTR13 1007 + 0 1007 23211 65 4 0 8 6 4 272 50 51 286 1 15 110 6 7 143 0 2 6 2 0 6 3 1 31 chain 68812 chr11_KI270831v1_alt 296895 + 138277 139087 L1PA6 6164 + 5346 6161 24255 244 0 1 261 1 5 153 0 7 8 7 0 136 chain 83844 chr11_KI270831v1_alt 296895 + 258502 259508 LTR13 1007 + 0 1007 20836 305 1 0 76 2 3 302 0 2 124 0 1 143 22 20 31 chain 36521 chr11_KI270831v1_alt 296895 + 294284 294739 THE1A-int 1579 + 1112 1565 37068 17 5 3 147 2 1 4 0 1 280 chain 140415 chr11_KI270829v1_alt 204059 + 2562 4538 L1PA13 3608 + 113 2063 13067 23 5 2 38 7 4 30 18 10 71 2 0 123 1 0 14 1 0 17 2 0 16 13 9 10 2 1 17 2 0 19 2 0 18 7 6 89 2 0 145 1 0 258 8 7 58 0 1 56 5 9 13 4 0 149 0 2 184 1 5 472 0 1 73 chain 243971 chr11_KI270829v1_alt 204059 + 9294 12071 L1PA5 6144 + 3366 6144 8375 325 2 0 2124 0 3 233 0 1 30 0 1 49 3 1 11 chain 159339 chr11_KI270829v1_alt 204059 + 34713 36607 L1PA6 6164 + 4250 6161 11789 399 1 0 232 5 4 217 0 8 205 0 2 489 0 1 196 12 20 138 chain 26539 chr11_KI270829v1_alt 204059 + 63905 64214 L1PA6 6164 + 4996 5312 46911 263 0 7 46 chain 33139 chr11_KI270829v1_alt 204059 + 64214 64593 L1PA6 6164 + 5316 5698 39411 218 1 4 160 chain 39784 chr11_KI270829v1_alt 204059 + 64593 65049 L1PA6 6164 + 5706 6162 34834 456 chain 13352 chr11_KI270829v1_alt 204059 + 65111 65282 L1PA16 3655 + 3417 3585 64541 162 3 0 6 chain 26721 chr11_KI270829v1_alt 204059 + 91479 91818 L1PA8 5853 + 5519 5853 46657 45 1 0 44 2 0 71 1 0 15 0 1 45 2 1 19 1 0 93 chain 548575 chr11_KI270829v1_alt 204059 + 92539 98571 L1PA2 6032 + 0 6032 832 72 0 1 184 2 1 119 0 2 1288 1 0 2876 1 0 1489 chain 56469 chr11_KI270829v1_alt 204059 + 166441 167131 L1PA5 6144 + 5432 6143 27437 65 0 11 70 0 8 143 0 4 402 2 0 8 chain 3084 chr11_KI270829v1_alt 204059 + 185319 185352 L1MB2 1706 + 1651 1684 98938 33 chain 66181 chr11_GL383547v1_alt 154407 + 20806 21559 L1PA4 6152 + 4270 5027 24914 78 0 4 675 chain 70571 chr11_GL383547v1_alt 154407 + 117102 117966 L1P1 4361 + 3150 4033 23850 53 1 2 634 0 18 176 chain 129600 chr11_GL383547v1_alt 154407 + 140940 142533 L1PA7 6471 + 4857 6461 14083 98 2 0 28 6 8 511 0 2 117 1 2 68 0 1 19 1 11 123 0 1 463 1 0 14 0 1 89 4 0 48 chain 33928 chr11_JH159136v1_alt 200998 + 29754 30154 L1PA7 6471 + 2832 3242 38767 232 0 10 168 chain 526236 chr11_JH159136v1_alt 200998 + 30214 36375 L1PA4 6152 + 0 6151 1989 125 17 3 14 17 31 408 0 3 6 4 1 443 7 6 13 1 3 442 8 12 399 1 0 1249 0 11 13 13 0 1151 9 17 434 22 0 341 0 1 607 0 1 417 chain 41895 chr11_JH159136v1_alt 200998 + 67764 68270 L1PA7 6471 + 5951 6457 33422 186 1 0 283 3 4 33 chain 38649 chr11_JH159136v1_alt 200998 + 77561 78082 L1PA11 4918 + 3821 4357 35606 231 0 17 8 5 6 148 0 1 38 0 1 43 0 1 5 1 0 8 5 0 29 chain 81552 chr11_JH159136v1_alt 200998 + 87854 88861 LTR13 1007 + 0 1007 21325 73 2 0 308 4 5 242 2 1 65 1 4 277 2 1 31 chain 169432 chr11_JH159136v1_alt 200998 + 89678 92255 MER57-int 2662 + 126 2624 11132 58 0 1 48 5 7 71 2 0 70 4 0 4 4 0 367 0 1 66 2 0 265 12 7 173 3 0 80 1 0 60 3 0 251 16 20 27 2 0 139 17 0 64 9 5 6 0 12 44 0 4 92 2 8 212 1 0 4 38 42 90 24 18 51 1 0 11 107 55 24 1 0 6 18 13 22 chain 12122 chr11_JH159136v1_alt 200998 + 92841 93145 MER4B 649 + 0 366 66623 21 20 9 17 1 0 7 85 116 23 5 28 30 0 5 88 0 15 7 chain 18252 chr11_JH159136v1_alt 200998 + 95950 96362 L1PB1 5432 + 5062 5422 58407 28 39 18 6 1 0 24 1 0 9 1 0 6 12 8 7 2 0 52 2 1 15 1 0 39 6 5 16 25 13 18 1 0 5 1 0 12 2 0 26 1 0 14 8 7 13 1 0 18 chain 9942 chr11_JH159136v1_alt 200998 + 193586 193724 L1PB4 2604 + 2407 2552 70549 57 0 1 20 7 13 54 chain 5349 chr11_JH159137v1_alt 191409 + 9395 9591 L1MA7 2200 + 1872 2051 83961 33 110 95 5 2 0 46 chain 69449 chr11_JH159137v1_alt 191409 + 35230 35984 L1PA3long 6157 + 5404 6157 24132 32 1 0 721 chain 86034 chr11_JH159137v1_alt 191409 + 36499 37523 LTR5B 1012 + 0 1012 20430 150 14 0 282 0 1 409 1 0 161 0 2 7 chain 3363 chr11_JH159137v1_alt 191409 + 39765 39805 MLT2B3 573 + 533 573 96443 40 chain 47055 chr11_JH159137v1_alt 191409 + 78112 78623 L1PA2 6032 + 5519 6030 30631 511 chain 18548 chr11_JH159137v1_alt 191409 + 100342 100571 L1P3 4156 + 3 232 58047 229 chain 16751 chr11_JH159137v1_alt 191409 + 113386 113724 L1PB1 5432 + 5114 5416 60090 24 1 0 5 4 3 12 5 1 8 2 0 53 3 1 15 1 0 39 6 5 16 3 0 6 17 6 19 3 1 4 1 0 14 2 0 23 3 0 22 1 0 13 1 0 12 chain 3895 chr11_JH159137v1_alt 191409 + 128880 128924 U2 167 + 7 51 92166 44 chain 39391 chr11_JH159137v1_alt 191409 + 135497 136045 LTR19B 566 + 0 566 35087 83 0 1 6 1 0 28 1 0 98 1 0 6 0 15 213 7 6 40 2 4 9 4 8 49 chain 71280 chr11_JH159137v1_alt 191409 + 138969 139746 L1PA4 6152 + 5374 6151 23703 777 chain 21313 chr11_JH159137v1_alt 191409 + 163621 164170 LTR12C 1709 + 932 1648 54749 177 0 47 39 212 303 38 5 4 26 29 59 23 chain 147166 chr11_JH159137v1_alt 191409 + 187592 189976 MER4-int 2692 + 650 2692 12532 64 6 4 138 3 0 63 0 1 280 0 5 83 0 1 21 1 0 9 7 7 86 1 0 12 1 0 53 329 1 20 16 10 125 3 5 226 0 1 143 3 0 271 19 3 101 0 3 15 0 7 69 1 0 1 2 0 28 0 11 7 19 9 147 0 1 11 chain 30063 chr11_KI270827v1_alt 67707 + 5105 5538 MLT2A1 477 + 0 477 41993 164 2 0 5 4 1 12 0 1 15 1 2 93 0 1 4 12 11 63 0 7 8 4 0 6 6 50 34 chain 116982 chr11_KI270826v1_alt 186169 + 117551 119111 THE1B-int 1605 + 0 1605 16060 66 10 13 226 14 15 112 10 35 46 1 5 19 7 8 4 1 0 154 0 1 69 2 3 179 6 7 231 0 6 202 0 3 201 chain 3915 chr11_KI270826v1_alt 186169 + 159824 159870 MER107 203 + 0 46 92020 46 chain 13250 chr11_KI270826v1_alt 186169 + 162363 162553 MER107 203 + 0 203 64711 145 1 6 10 6 14 28 chain 20750 chr12_GL877875v1_alt 167313 + 47326 47585 AluY 311 + 40 302 55430 86 0 1 130 7 9 36 chain 40592 chr12_GL877875v1_alt 167313 + 56949 57612 L1PB1 5432 + 4755 5426 34232 242 2 0 94 3 43 10 1 0 12 2 0 3 2 0 9 3 1 51 2 1 10 6 5 44 1 0 21 22 11 14 11 8 12 2 0 24 1 0 23 1 0 11 1 0 15 1 0 7 chain 38049 chr12_GL877875v1_alt 167313 + 57959 58422 LTR2 463 + 0 463 36034 207 1 0 153 14 15 88 chain 3561 chr12_GL877875v1_alt 167313 + 162522 162562 MADE1 96 + 2 42 94743 40 chain 15603 chr12_GL877876v1_alt 408271 + 30940 31119 L1PA2 6032 + 5847 6025 61529 39 0 1 132 2 0 6 chain 2974 chr12_GL877876v1_alt 408271 + 116637 116701 MSTB2 466 + 318 383 100115 27 19 20 18 chain 8321 chr12_GL877876v1_alt 408271 + 123824 123927 MER61F 604 + 471 572 74112 63 2 0 38 chain 27127 chr12_GL877876v1_alt 408271 + 239099 239424 L1PA7 6471 + 6138 6465 46084 185 0 5 131 3 0 6 chain 165380 chr12_GL877876v1_alt 408271 + 332728 334642 L1PA5 6144 + 4213 6129 11388 415 1 0 578 0 2 86 1 0 222 3 4 545 1 2 62 chain 488439 chr12_GL877876v1_alt 408271 + 339037 345329 L1PA7 6471 + 0 6467 3458 227 32 32 150 1 2 489 3 4 452 1 0 29 0 1 109 12 15 275 0 1 197 0 2 5 2 1 69 12 13 68 0 11 50 0 2 33 0 1 106 2 0 6 0 2 50 2 1 116 0 2 115 1 2 285 0 1 688 1 0 738 0 3 115 0 1 138 0 2 228 0 85 253 0 1 20 1 0 9 1 0 311 0 1 40 5 64 65 26 22 66 0 4 448 6 8 49 38 32 8 0 5 139 chain 135204 chr12_GL877876v1_alt 408271 + 380007 381484 L1PA3long 6157 + 4680 6157 13522 1477 chain 65274 chr12_KI270837v1_alt 40090 + 4146 5094 LTR12 884 + 0 884 25112 24 1 0 65 66 0 248 0 1 39 2 0 193 6 7 48 0 3 5 24 24 227 chain 10917 chr12_KI270837v1_alt 40090 + 8975 9238 L1PB1 5432 + 5181 5420 68673 39 2 1 15 1 0 45 1 0 11 72 54 24 1 0 22 5 4 8 1 0 16 chain 260837 chr12_KI270837v1_alt 40090 + 36766 40090 L1P2 5180 + 2 3340 7947 148 1 0 97 3 2 29 1 2 216 38 0 8 5 41 242 1 0 6 1 0 275 0 1 339 6 1 6 0 5 9 0 1 29 0 4 744 0 2 49 0 2 65 1 2 41 0 1 180 0 1 283 0 1 189 0 3 245 0 2 67 chain 562206 chr12_GL383549v1_alt 120804 + 37302 43322 L1HS 6032 + 0 6032 138 742 1 0 3689 0 9 1534 0 4 54 chain 54443 chr12_GL383549v1_alt 120804 + 72523 73200 L1PA8 5853 + 5182 5853 28071 380 1 0 47 2 0 73 1 0 7 2 1 10 0 1 39 2 1 19 3 2 91 chain 8892 chr12_GL383549v1_alt 120804 + 74449 74568 L1PREC2 3366 + 2733 2850 72796 18 2 0 55 1 0 36 0 1 7 chain 456557 chr12_GL383549v1_alt 120804 + 108758 113839 L1PA3long 6157 + 1098 6156 4220 1228 1 0 370 0 1 480 1 0 2459 18 0 456 5 1 63 chain 11359 chr12_KI270835v1_alt 238139 + 5945 6093 HERVE-int 4064 + 2118 2264 67995 83 0 1 9 3 0 53 chain 11903 chr12_KI270835v1_alt 238139 + 7502 7651 HERVE-int 4064 + 2118 2264 67000 93 3 0 53 chain 9626 chr12_KI270835v1_alt 238139 + 9137 9277 HERVE-int 4064 + 2118 2264 71208 55 0 9 29 14 11 42 chain 9464 chr12_KI270835v1_alt 238139 + 11331 11471 HERVE-int 4064 + 2118 2264 71576 55 0 9 27 18 15 40 chain 49707 chr12_KI270835v1_alt 238139 + 11928 12531 HERVE-int 4064 + 2118 2717 29682 93 3 0 492 4 3 11 chain 50493 chr12_KI270835v1_alt 238139 + 13819 14418 HERVE-int 4064 + 2122 2717 29382 89 3 0 127 1 0 379 chain 540985 chr12_KI270835v1_alt 238139 + 53869 59885 L1PA3long 6157 + 0 6157 1281 70 0 1 81 0 1 211 0 1 412 1 129 1727 0 5 1379 0 1 342 0 4 1638 7 0 8 1 8 139 chain 146326 chr12_KI270835v1_alt 238139 + 81452 83162 L1PA5 6144 + 4407 6132 12587 315 0 1 264 6 3 629 5 5 130 3 20 358 chain 31407 chr12_KI270835v1_alt 238139 + 100602 100956 L1PA5 6144 + 5780 6134 40806 354 chain 52102 chr12_KI270835v1_alt 238139 + 164543 165125 L1PA4 6152 + 5569 6151 28844 582 chain 4630 chr12_KI270835v1_alt 238139 + 194552 194604 U13_ 108 + 47 99 87641 52 chain 31326 chr12_GL383550v2_alt 169178 + 1234 1686 MER1A 529 + 0 453 40868 11 2 0 30 5 1 17 31 38 356 chain 531839 chr12_GL383550v2_alt 169178 + 19959 26976 L1PA7 6471 + 0 6459 1759 403 0 4 166 0 1 213 0 1 577 0 1 6 2 1 24 0 3 949 1 0 291 0 1 27 1 0 337 12 22 522 0 4 260 0 4 200 0 1 651 0 8 294 0 1 339 1 0 4 30 2 32 0 1 268 1 4 472 576 6 36 0 1 322 chain 48655 chr12_GL383550v2_alt 169178 + 26044 26579 L1PA3long 6157 + 5620 6155 30067 535 chain 540113 chr12_GL383550v2_alt 169178 + 42213 48233 L1PA3long 6157 + 1 6150 1333 7 3 0 144 0 1 619 4 132 2025 0 1 940 0 2 2278 chain 28607 chr12_GL383550v2_alt 169178 + 61877 62216 L1PA5 6144 + 5801 6140 43940 90 1 0 143 0 1 105 chain 22363 chr12_GL383550v2_alt 169178 + 76712 77054 THE1B 368 + 0 357 53326 44 1 16 48 2 0 66 1 0 24 10 11 4 0 1 14 30 31 98 chain 497108 chr12_GL383550v2_alt 169178 + 78629 84744 L1PA6 6164 + 0 6143 3233 449 19 0 349 15 32 96 8 12 426 8 9 628 0 1 148 1 0 63 0 2 108 4 5 476 8 6 379 0 1 46 5 8 277 0 1 179 0 2 116 0 1 117 4 1 74 0 3 43 0 1 82 0 1 75 0 4 147 0 4 38 0 1 58 0 1 30 0 1 814 1 0 222 0 2 7 0 1 453 3 4 139 chain 36147 chr12_GL383550v2_alt 169178 + 99719 100149 L1PA7 6471 + 6041 6469 37315 90 2 0 338 chain 4613 chr12_GL383550v2_alt 169178 + 119011 119166 MER53 195 + 0 178 87733 27 39 87 18 37 12 34 chain 16332 chr12_GL383550v2_alt 169178 + 123652 123877 7SK 245 + 12 239 60592 100 18 22 39 2 0 66 chain 9694 chr12_GL383552v1_alt 138655 + 34418 34602 MER31A 484 + 150 350 71063 61 0 4 17 40 55 5 3 0 58 chain 6539 chr12_GL383552v1_alt 138655 + 53020 53104 ORSL-2b 485 + 130 214 79202 84 chain 20319 chr12_GL383552v1_alt 138655 + 59255 59535 L1PA8A 6298 + 6010 6290 55988 82 11 19 33 9 0 39 0 1 106 chain 45884 chr12_GL383552v1_alt 138655 + 64854 65596 L1PA15 4387 + 3590 4327 31110 6 4 0 49 0 1 62 6 9 96 2 0 16 3 0 62 14 12 29 1 0 27 1 0 9 0 10 126 1 0 26 1 0 54 2 1 22 4 0 10 1 0 35 24 21 12 0 7 24 2 0 11 chain 21200 chr12_GL383552v1_alt 138655 + 66079 66438 THE1B 368 + 8 368 54882 39 73 74 51 3 2 122 0 1 71 chain 46121 chr12_GL383553v2_alt 152874 + 26352 26938 LTR71B 605 + 0 605 31003 126 7 23 130 0 3 158 1 0 145 0 1 19 chain 28419 chr12_GL383553v2_alt 152874 + 142730 143250 L1PA16 3655 + 3090 3596 44237 68 17 22 19 9 8 79 21 19 168 57 49 56 3 0 7 2 0 6 3 0 5 chain 36324 chr12_GL383553v2_alt 152874 + 145348 145744 L1PA5 6144 + 5739 6135 37191 396 chain 2894 chr12_KI270834v1_alt 119498 + 32113 32160 L1MB7 1623 + 1386 1423 100875 7 10 0 30 chain 5927 chr12_GL383551v1_alt 184319 + 23680 23745 L1PB2 3958 + 3683 3748 81368 65 chain 4570 chr12_GL383551v1_alt 184319 + 30654 30720 L1PA16 3655 + 3524 3590 87965 44 0 3 6 3 0 13 chain 25284 chr12_GL383551v1_alt 184319 + 52281 52636 THE1B 368 + 0 368 48806 40 0 5 124 1 0 32 0 1 7 27 35 124 chain 31832 chr12_GL383551v1_alt 184319 + 57459 57832 L1PA7 6471 + 6085 6458 40470 373 chain 174486 chr12_GL383551v1_alt 184319 + 159598 161934 L1PB1 5432 + 2695 5026 10869 90 0 1 56 1 0 12 12 22 128 6 4 49 1 0 323 0 1 197 1 0 139 35 20 177 0 1 110 15 3 104 0 1 106 0 1 68 1 2 319 1 4 98 0 1 73 11 12 29 6 7 125 0 5 43 chain 18640 chr12_GL383551v1_alt 184319 + 169569 169839 MER41A 554 + 290 554 57952 118 11 0 60 9 14 72 chain 18422 chr13_KI270840v1_alt 191684 + 5332 5640 LTR7B 505 + 0 505 58202 51 0 1 56 57 254 79 14 13 51 chain 74671 chr13_KI270840v1_alt 191684 + 21644 22567 LTR5_Hs 974 + 0 974 22919 134 0 1 26 0 2 122 0 1 65 0 1 75 0 35 357 8 15 37 2 0 20 0 6 77 chain 6926 chr13_KI270840v1_alt 191684 + 32806 32896 MER30 238 + 136 232 77861 16 0 6 74 chain 69194 chr13_KI270840v1_alt 191684 + 157578 158346 L1PA5 6144 + 5367 6135 24178 768 chain 28781 chr13_KI270839v1_alt 180306 + 30564 30943 THE1C 375 + 0 375 43658 180 4 1 169 1 0 25 chain 7122 chr13_KI270843v1_alt 103832 + 5082 5194 L1MA4 2864 + 2535 2645 77191 69 7 6 24 1 0 11 chain 6067 chr13_KI270843v1_alt 103832 + 50819 50885 L1PA8 5853 + 5780 5846 80840 66 chain 22834 chr13_KI270843v1_alt 103832 + 67983 68358 MLT2A1 477 + 0 385 52612 46 0 2 60 41 45 16 1 5 13 25 25 173 chain 3230 chr13_KI270843v1_alt 103832 + 94386 94424 L1MDa 1598 + 667 705 97663 38 chain 26657 chr13_KI270843v1_alt 103832 + 103086 103498 L1PA8 5853 + 5445 5853 46749 73 0 4 36 12 11 41 9 7 58 15 13 52 2 1 19 5 4 83 1 0 6 chain 29139 chr13_KI270841v1_alt 169134 + 56676 57197 THE1C-int 1605 + 1174 1605 43136 123 11 14 80 121 29 37 1 0 148 chain 60518 chr13_KI270841v1_alt 169134 + 65724 66500 LTR12 884 + 0 884 26228 25 1 0 30 0 107 57 4 6 153 2 0 33 2 3 162 0 1 307 chain 60332 chr13_KI270841v1_alt 169134 + 86989 87889 L1PA8A 6298 + 5514 6289 26281 65 0 1 212 128 0 384 13 15 98 chain 3836 chr13_KI270841v1_alt 169134 + 154060 154137 MADE1 96 + 0 92 92586 16 15 31 14 1 0 31 chain 6053 chr13_KI270838v1_alt 306913 + 3806 3916 MLT1A1 405 + 283 394 80888 41 25 26 44 chain 118995 chr13_KI270838v1_alt 306913 + 38660 40049 LTR12C 1709 + 0 1709 15702 78 1 2 712 1 319 6 2 0 107 0 4 43 1 0 438 chain 4062 chr13_KI270838v1_alt 306913 + 56383 56542 LTR12C 1709 + 1118 1195 91007 41 99 17 19 chain 4438 chr13_KI270838v1_alt 306913 + 56570 56669 LTR12C 1709 + 660 718 88675 17 41 0 41 chain 314254 chr13_KI270838v1_alt 306913 + 207795 211334 L1PA5 6144 + 2588 6132 6524 1041 1 0 244 0 1 596 1 6 1656 chain 300272 chr14_KI270844v1_alt 322166 + 19467 25729 L1PA10 4194 + 175 4150 6818 12 11 0 11 3 0 18 11 7 10 2 0 8 1 0 9 1 0 21 2 0 15 1 0 8 49 23 18 2 0 21 1 0 7 1 0 32 10 0 8 1 0 80 3 1 396 4 2 232 0 1 42 0 23 103 1947 0 171 3 2 695 1 0 459 0 1 4 1 0 61 3 7 100 17 9 232 0 4 100 2 1 229 0 1 100 0 1 201 2 10 32 306 0 8 0 8 397 3 0 34 chain 16670 chr14_KI270844v1_alt 322166 + 42641 42876 LTR12C 1709 + 874 1109 60188 194 2 17 7 15 0 17 chain 89390 chr14_KI270844v1_alt 322166 + 56858 57934 THE1A-int 1579 + 480 1574 19778 57 0 2 341 0 3 338 0 13 340 chain 6671 chr14_KI270844v1_alt 322166 + 57939 58163 THE1A 353 + 0 220 48492 106 8 4 110 chain 40158 chr14_KI270844v1_alt 322166 + 58177 58623 L1PA4 6152 + 5705 6151 34552 446 chain 4765 chr14_KI270844v1_alt 322166 + 58635 58795 THE1A 353 + 220 353 48492 79 17 0 5 10 0 49 chain 20992 chr14_KI270844v1_alt 322166 + 92571 92907 THE1D 372 + 0 360 55134 162 55 62 14 12 29 93 chain 6220 chr14_KI270844v1_alt 322166 + 133770 133848 THE1D 372 + 83 166 80269 24 0 1 27 0 4 27 chain 63019 chr14_KI270844v1_alt 322166 + 135970 136768 LTR12 884 + 0 884 25620 24 1 0 41 8 44 19 4 29 90 0 25 68 1 2 35 2 0 161 0 2 344 chain 23554 chr14_KI270844v1_alt 322166 + 139553 139817 AluYc3 301 + 9 274 51496 111 0 1 153 chain 112870 chr14_KI270844v1_alt 322166 + 144528 146037 L1PA8 5853 + 4355 5853 16688 559 0 1 26 15 25 40 0 4 83 8 7 174 0 1 115 29 11 79 0 1 83 1 0 34 3 0 11 2 0 70 1 0 5 8 7 49 2 1 112 chain 22942 chr14_KI270844v1_alt 322166 + 216902 217180 L1PA10 4194 + 2550 2829 52457 73 0 1 205 chain 25667 chr14_KI270844v1_alt 322166 + 227481 227892 MSTA 426 + 0 426 48215 102 0 2 104 3 1 13 67 81 76 1 2 45 chain 22270 chr14_KI270844v1_alt 322166 + 232919 233285 L1PB4 2604 + 1633 1988 53449 13 3 0 58 19 11 7 5 0 70 18 23 173 chain 33619 chr14_KI270844v1_alt 322166 + 239058 239589 L1PA15 4387 + 3847 4356 38986 44 3 1 41 1 0 171 2 1 25 1 0 54 2 1 22 6 1 8 2 1 39 17 14 42 2 0 10 12 7 27 chain 122367 chr14_KI270844v1_alt 322166 + 274075 275619 THE1B-int 1605 + 17 1600 15131 415 2 33 15 0 1 5 1 0 118 0 1 25 6 9 5 3 0 125 0 1 68 4 6 25 2 0 154 0 2 401 0 4 170 chain 30602 chr14_KI270844v1_alt 322166 + 318265 319016 MER1A 529 + 85 529 41464 169 310 0 30 0 3 5 9 6 158 9 10 29 11 13 21 chain 4651 chr14_KI270847v1_alt 1511111 + 80182 80238 L1MB7 1623 + 0 56 87525 56 chain 24015 chr14_KI270847v1_alt 1511111 + 110857 111150 L1PA5 6144 + 5846 6144 50771 155 0 1 126 1 5 11 chain 19248 chr14_KI270847v1_alt 1511111 + 232601 232822 AluSp 311 + 39 260 57293 221 chain 34119 chr14_KI270847v1_alt 1511111 + 279689 280150 LTR2B 499 + 9 494 38621 5 1 0 10 0 10 40 3 0 27 5 11 16 5 17 163 0 1 8 1 0 177 chain 11937 chr14_KI270847v1_alt 1511111 + 346303 346521 MER1B 344 + 102 335 66939 19 8 11 5 3 0 18 0 4 64 30 43 10 2 0 59 chain 35526 chr14_KI270847v1_alt 1511111 + 347757 348172 L1PA7 6471 + 6054 6470 37700 82 0 1 333 chain 3422 chr14_KI270847v1_alt 1511111 + 445166 445205 MADE1 96 + 57 96 95887 39 chain 11164 chr14_KI270847v1_alt 1511111 + 451382 451517 MSTB 430 + 0 135 68316 135 chain 24967 chr14_KI270847v1_alt 1511111 + 463483 463800 LTR12D 1347 + 831 1347 49335 89 0 200 29 4 5 104 2 0 89 chain 11116 chr14_KI270847v1_alt 1511111 + 468867 469062 Tigger4a 237 + 14 212 68386 46 10 11 51 6 7 34 12 13 36 chain 244674 chr14_KI270847v1_alt 1511111 + 472592 475903 HERVL-int 5654 + 0 3035 8361 205 0 14 429 2 1 107 3 0 183 0 1 4 1 0 130 13 14 514 6 10 142 0 2 611 0 4 88 0 1 132 0 32 187 0 7 136 337 0 81 chain 10332 chr14_KI270847v1_alt 1511111 + 489409 489567 MSTC-int 1625 + 1462 1617 69731 64 7 0 18 7 11 62 chain 18443 chr14_KI270847v1_alt 1511111 + 490460 490719 MSTC 436 + 177 436 58176 4 1 0 54 9 10 132 0 1 32 1 0 26 chain 7703 chr14_KI270847v1_alt 1511111 + 537248 537340 L1MA3 4352 + 2370 2462 75621 92 chain 5215 chr14_KI270847v1_alt 1511111 + 567275 567396 MIR 256 + 112 225 84604 22 20 10 32 18 20 29 chain 4999 chr14_KI270847v1_alt 1511111 + 649406 649608 MER97d 503 + 65 266 85668 22 1 0 26 121 121 32 chain 27964 chr14_KI270847v1_alt 1511111 + 918846 919144 AluYa5 310 + 0 296 44928 132 2 0 164 chain 27538 chr14_KI270847v1_alt 1511111 + 988743 989103 THE1B 368 + 0 357 45537 172 2 1 5 0 1 21 2 0 93 1 0 64 chain 44301 chr14_KI270847v1_alt 1511111 + 990323 990961 MER51A 677 + 0 661 31947 176 17 0 23 10 0 26 13 24 127 0 39 100 20 20 126 chain 7540 chr14_KI270847v1_alt 1511111 + 1015962 1016056 MER30 238 + 144 238 76028 94 chain 396852 chr14_KI270847v1_alt 1511111 + 1181117 1187112 L1PB1 5432 + 19 5384 5202 27 11 12 193 0 2 153 4 0 116 15 14 54 0 5 230 0 3 521 3 0 16 7 0 10 24 22 13 13 8 111 11 10 262 1 0 4 0 1 206 0 1 482 5 0 242 3 5 100 1 0 49 1 4 326 0 3 196 4 0 62 2 1 118 1 2 108 10 13 158 3 5 31 0 1 452 1 0 257 0 2 75 0 2 98 612 13 37 4 5 177 9 10 5 1 0 51 11 11 24 1 0 6 19 14 11 3 1 50 2 1 60 1 0 6 76 59 24 1 0 14 chain 28878 chr14_KI270847v1_alt 1511111 + 1268973 1269348 THE1C 375 + 0 375 43519 185 1 0 98 6 7 85 chain 101092 chr14_KI270847v1_alt 1511111 + 1269391 1270875 THE1C-int 1605 + 45 1594 18170 51 1 58 14 3 0 129 0 1 31 0 6 110 5 12 284 16 10 95 9 10 144 16 18 5 2 0 91 2 0 5 0 2 54 5 4 91 73 74 185 0 2 63 chain 14319 chr14_KI270847v1_alt 1511111 + 1316354 1316630 L1PB1 5432 + 4967 5220 63168 139 87 64 50 chain 11743 chr14_KI270847v1_alt 1511111 + 1316632 1316855 L1PB1 5432 + 5221 5422 67324 16 4 3 41 1 0 14 2 0 7 16 6 18 3 1 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 chain 49847 chr14_KI270847v1_alt 1511111 + 1362434 1363127 L1P4 1494 + 99 797 29620 24 1 0 22 10 9 401 9 14 165 3 4 45 1 2 12 chain 118340 chr14_KI270847v1_alt 1511111 + 1415751 1417056 L1PA5 6144 + 4831 6144 15826 853 0 1 314 0 7 138 chain 5624 chr14_KI270847v1_alt 1511111 + 1473104 1473168 MSTA 426 + 273 337 82689 64 chain 2899 chr14_KI270845v1_alt 180703 + 180192 180229 MER41C 542 + 18 57 100846 28 0 2 9 chain 24259 chr14_KI270846v1_alt 1351393 + 15503 15811 LTR12C 1709 + 803 1198 50406 34 1 0 194 0 88 79 chain 8827 chr14_KI270846v1_alt 1351393 + 15811 15974 LTR12C 1709 + 713 877 66399 35 8 47 42 1 0 7 43 6 27 chain 75887 chr14_KI270846v1_alt 1351393 + 21874 22802 LTR5B 1012 + 2 1012 22616 6 0 4 82 0 61 48 0 1 432 0 3 109 0 2 22 6 14 217 0 3 6 chain 132762 chr14_KI270846v1_alt 1351393 + 141081 142756 HERVK-int 6823 + 3734 5416 13756 4 1 0 521 2 1 307 0 1 433 0 5 133 1 0 24 20 24 229 chain 84711 chr14_KI270846v1_alt 1351393 + 142968 143972 LTR5B 1012 + 0 1012 20680 107 1 4 637 0 2 253 0 3 6 chain 112500 chr14_KI270846v1_alt 1351393 + 256188 257769 L1PB2 3958 + 2283 3838 16752 43 0 1 150 0 2 394 1 2 49 1 0 285 12 0 22 5 4 33 0 1 38 2 0 56 11 8 8 0 3 57 2 0 13 5 1 152 1 0 12 1 0 62 1 0 20 15 19 37 33 21 54 0 2 6 chain 4293 chr14_KI270846v1_alt 1351393 + 264126 264180 L1MA4 2864 + 2752 2804 89549 15 2 0 37 chain 21078 chr14_KI270846v1_alt 1351393 + 296619 296872 L1PBa 3878 + 2222 2475 55031 253 chain 12562 chr14_KI270846v1_alt 1351393 + 296874 297028 L1PBa 3878 + 1272 1426 65877 154 chain 66968 chr14_KI270846v1_alt 1351393 + 410261 411034 LTR17 781 + 0 774 24710 327 0 1 446 chain 47995 chr14_KI270846v1_alt 1351393 + 430688 431666 MER4E1 777 + 0 647 30299 25 2 0 194 357 0 103 7 26 85 0 1 106 2 10 97 chain 111309 chr14_KI270846v1_alt 1351393 + 432954 434332 HERVL-int 5654 + 4257 5654 16903 47 1 0 67 7 22 1020 6 11 230 chain 55498 chr14_KI270846v1_alt 1351393 + 510261 511061 MER11A 1151 + 72 1151 27722 104 8 0 23 3 1 16 0 15 58 14 11 26 37 0 62 0 1 128 0 1 42 0 312 24 1 0 5 1 2 91 0 1 90 1 0 66 chain 38515 chr14_KI270846v1_alt 1351393 + 554850 555394 LTR22 571 + 0 533 35698 77 2 1 139 0 1 218 47 36 61 chain 28794 chr14_KI270846v1_alt 1351393 + 580523 580932 L1PA8 5853 + 5450 5853 43643 114 2 1 44 2 0 69 12 11 48 7 6 17 2 1 92 chain 76032 chr14_KI270846v1_alt 1351393 + 629180 630161 L1PA7 6471 + 2539 3532 22557 101 5 0 34 1 3 257 0 16 169 1 0 4 3 0 289 0 4 74 7 6 36 chain 10561 chr14_KI270846v1_alt 1351393 + 657221 657377 HERVL-int 5654 + 5495 5654 69300 37 15 16 94 0 2 10 chain 18433 chr14_KI270846v1_alt 1351393 + 734751 734972 L1PA4 6152 + 5914 6137 58190 191 0 2 30 chain 21108 chr14_KI270846v1_alt 1351393 + 766950 767209 L1PA7 6471 + 4102 4360 54997 97 1 0 161 chain 38455 chr14_KI270846v1_alt 1351393 + 805766 806194 L1PA4 6152 + 5708 6136 35751 428 chain 38700 chr14_KI270846v1_alt 1351393 + 829698 830126 L1PA4 6152 + 5708 6136 35560 428 chain 7350 chr14_KI270846v1_alt 1351393 + 873546 873634 HERVL-int 5654 + 5550 5640 76520 8 0 2 80 chain 14314 chr14_KI270846v1_alt 1351393 + 900751 900958 L1PA6 6164 + 5955 6160 63172 47 8 15 7 3 0 5 4 0 125 2 0 6 chain 239310 chr14_KI270846v1_alt 1351393 + 918894 921550 L1PA4 6152 + 3078 5736 8486 20 0 2 2636 chain 42151 chr14_KI270846v1_alt 1351393 + 929827 930337 MER9a2 513 + 0 513 33276 225 0 1 29 10 9 190 0 2 37 0 1 19 chain 12149 chr14_KI270846v1_alt 1351393 + 953991 954131 L1PA4 6152 + 5472 5611 66575 49 1 0 90 chain 46637 chr14_KI270846v1_alt 1351393 + 954132 954651 L1PA4 6152 + 5611 6133 30800 359 0 3 160 chain 75277 chr14_KI270846v1_alt 1351393 + 1031072 1032036 LTR13_ 950 + 2 950 22774 279 0 1 78 7 0 247 23 12 135 2 1 49 10 12 134 chain 8667 chr14_KI270846v1_alt 1351393 + 1128350 1128440 5S 121 + 0 90 73300 90 chain 21365 chr14_KI270846v1_alt 1351393 + 1145685 1145964 AluY 311 + 36 302 54682 95 1 2 45 0 1 109 15 0 14 chain 35527 chr14_KI270846v1_alt 1351393 + 1148405 1148947 LTR22 571 + 0 568 37697 72 7 6 80 0 1 69 0 36 7 0 1 99 5 7 58 47 36 64 5 6 9 1 0 8 2 0 9 chain 16615 chr14_KI270846v1_alt 1351393 + 1165275 1165485 L1PA6 6164 + 5952 6160 60251 202 2 0 6 chain 8447 chr14_KI270846v1_alt 1351393 + 1189727 1189891 LTR22B 500 + 68 231 73802 55 5 3 14 34 35 56 chain 78063 chr14_KI270846v1_alt 1351393 + 1224511 1225401 MER11D 897 + 0 897 22083 424 0 1 149 0 6 317 chain 43242 chr14_KI270846v1_alt 1351393 + 1268770 1269294 MER11C 1089 + 548 1073 32617 25 27 27 243 0 1 229 chain 67645 chr14_KI270846v1_alt 1351393 + 1288672 1289434 L1PA4 6152 + 4744 5506 24534 762 chain 28485 chr14_KI270846v1_alt 1351393 + 1297871 1298193 L1PA7 6471 + 6143 6465 44149 322 chain 3002 chr14_KI270846v1_alt 1351393 + 1300396 1300428 MLT2C1 407 + 48 80 99825 32 chain 3330 chr14_KI270846v1_alt 1351393 + 1305076 1305113 MER52C 1267 + 875 912 96762 37 chain 69940 chr14_KI270846v1_alt 1351393 + 1310195 1310961 L1PA3long 6157 + 5386 6157 24007 525 0 5 241 chain 7367 chr15_KI270852v1_alt 478999 + 65640 65731 U6 107 + 0 91 76487 91 chain 6986 chr15_KI270852v1_alt 478999 + 66477 66590 L1PA16 3655 + 3402 3573 77650 44 0 1 12 12 69 45 chain 42575 chr15_KI270852v1_alt 478999 + 72576 73049 L1PA4 6152 + 5135 5608 33020 473 chain 27053 chr15_KI270852v1_alt 478999 + 115905 116473 LTR4 552 + 34 552 46192 30 40 49 68 1 0 11 12 11 115 78 7 50 51 66 23 1 0 88 chain 91225 chr15_KI270852v1_alt 478999 + 154720 161802 L1PA7 6471 + 2277 6342 19461 160 0 1 5 1 0 189 17 0 51 4 5 20 0 3 9 5664 2649 220 4 5 27 1 0 53 0 1 18 18 26 589 1 3 31 chain 72131 chr15_KI270852v1_alt 478999 + 239193 239972 L1PA3long 6157 + 5370 6149 23501 779 chain 9581 chr15_KI270852v1_alt 478999 + 240838 240957 MER4A1 472 + 0 121 71302 99 0 2 20 chain 55852 chr15_KI270852v1_alt 478999 + 315848 316541 L1PA7 6471 + 5784 6468 27607 449 2 0 57 2 0 5 13 15 147 7 0 11 chain 33442 chr15_KI270852v1_alt 478999 + 327793 328160 L1PA4 6152 + 5774 6143 39139 355 0 2 12 chain 18881 chr15_KI270852v1_alt 478999 + 430303 430548 L1PA15 4387 + 3210 3455 57662 15 1 0 119 0 1 110 chain 46912 chr15_KI270851v1_alt 263054 + 155242 155950 L1MA3 4352 + 1504 2208 30694 24 1 0 47 10 7 28 17 16 27 1 0 118 2 1 10 1 2 5 0 3 99 1 0 89 2 1 77 5 6 144 chain 92232 chr15_KI270851v1_alt 263054 + 239528 240593 MER11C 1089 + 0 1073 19307 225 0 5 356 12 13 394 0 2 78 chain 20480 chr15_KI270848v1_alt 327382 + 104130 104402 AluY 311 + 1 293 55801 41 9 15 59 0 1 15 0 1 5 1 13 142 chain 40022 chr15_KI270848v1_alt 327382 + 113520 114266 L1MA5A 2387 + 1576 2288 34638 60 1 0 31 1 0 56 1 0 18 0 3 225 1 2 51 0 1 5 101 91 36 2 0 15 5 7 10 1 0 28 50 21 19 1 5 28 chain 211145 chr15_KI270848v1_alt 327382 + 197031 199418 L1PA5 6144 + 3757 6144 9314 173 1 2 2156 20 19 37 chain 60330 chr15_GL383554v1_alt 296527 + 177022 177756 L1PA7 6471 + 5726 6459 26284 414 2 0 167 0 1 151 chain 544008 chr15_KI270849v1_alt 244917 + 6131 13199 L1PA7 6471 + 0 6461 1084 224 0 2 174 1 3 432 4 0 582 1 2 52 0 1 287 0 1 45 1 0 720 311 0 110 1 3 911 3 7 268 5 6 189 2 0 588 0 2 62 0 4 202 0 9 17 304 0 116 14 1 184 1 0 416 2 1 199 0 1 640 chain 473787 chr15_KI270849v1_alt 244917 + 62618 67844 L1PA3long 6157 + 0 6157 3774 810 0 1 501 0 916 2125 0 4 509 1 2 442 0 4 43 0 3 22 1 2 90 0 1 682 chain 72469 chr15_KI270849v1_alt 244917 + 93799 94773 MER11A 1151 + 1 1120 23436 56 0 98 73 0 5 56 8 5 38 0 2 54 0 1 54 0 1 89 3 5 21 1 0 9 0 1 104 6 9 8 1 0 53 1 5 70 7 41 226 7 6 29 chain 22452 chr15_KI270849v1_alt 244917 + 125318 125605 L1PA4 6152 + 5865 6152 53195 27 1 0 107 7 0 7 3 6 129 0 5 6 chain 2989 chr15_KI270849v1_alt 244917 + 139475 139521 MLT2B4 540 + 492 532 99975 6 6 0 34 chain 8702 chr15_KI270849v1_alt 244917 + 167936 168047 HY1 111 + 0 111 73205 111 chain 99816 chr15_KI270849v1_alt 244917 + 187348 188463 L1PA3long 6157 + 3172 4293 18317 167 0 1 56 7 12 885 chain 168437 chr15_KI270849v1_alt 244917 + 188463 190311 L1PA3long 6157 + 4295 6142 11194 1707 1 0 140 chain 499508 chr15_KI270849v1_alt 244917 + 197655 204163 L1PA6 6164 + 0 6160 3147 64 0 1 320 0 13 12 0 1 46 17 16 67 0 1 647 0 3 290 6 7 19 1 0 221 0 1 135 23 0 173 336 0 227 0 2 923 0 2 88 7 8 51 0 2 596 1 2 28 0 3 4 1 0 169 3 4 23 29 18 181 0 2 309 1 0 5 10 3 237 1 2 217 0 4 175 0 1 273 4 1 500 0 1 54 6 0 8 chain 10903 chr15_KI270849v1_alt 244917 + 216482 216645 U1 164 + 3 164 68693 71 20 18 72 chain 19906 chr15_GL383555v2_alt 388773 + 68738 68994 AluY 311 + 24 292 56522 22 0 9 76 1 2 128 6 8 23 chain 4385 chr15_GL383555v2_alt 388773 + 117832 117976 MER5B 177 - 22 162 88970 31 81 77 32 chain 3817 chr15_GL383555v2_alt 388773 + 124022 124109 MSTD 398 + 292 378 92731 21 31 30 35 chain 4159 chr15_GL383555v2_alt 388773 + 133512 133559 MER58A 224 + 168 215 90405 47 chain 306323 chr15_GL383555v2_alt 388773 + 176125 180177 L1PBa1 4058 + 10 4037 6692 23 19 22 197 0 1 94 5 15 68 2 0 132 9 8 48 14 13 25 35 6 220 1 0 4 1 2 101 3 0 5 1 4 155 0 1 48 28 28 269 0 3 36 0 4 100 0 5 15 1 0 62 0 3 84 1 4 647 4 0 140 0 4 54 0 5 654 0 5 110 8 7 104 25 18 102 2 1 6 1 0 29 1 0 34 2 0 7 2 0 108 3 1 15 1 0 14 7 0 15 2 0 19 14 9 21 1 0 9 2 1 7 0 2 5 1 0 5 1 0 9 1 0 7 0 2 7 1 0 39 chain 22076 chr15_GL383555v2_alt 388773 + 297902 298276 L1PB1 5432 + 4913 5279 53731 82 3 2 106 15 18 17 2 1 5 1 0 12 2 0 3 2 0 9 2 0 52 20 18 41 chain 27365 chr15_GL383555v2_alt 388773 + 366808 367165 THE1B 368 + 0 368 45744 44 6 21 104 1 0 31 2 0 94 1 0 74 chain 11520 chr15_GL383555v2_alt 388773 + 378512 378790 L1MB2 1706 + 1428 1694 67713 79 23 25 31 88 72 41 0 2 16 chain 3251 chr15_KI270850v1_alt 430880 + 6032 6076 Charlie4a 502 + 344 387 97474 5 1 0 38 chain 18793 chr15_KI270850v1_alt 430880 + 68624 68844 L1PA7 6471 + 6243 6461 57789 42 2 0 176 chain 18915 chr15_KI270850v1_alt 430880 + 147624 147844 L1PA7 6471 + 6243 6461 57625 39 2 0 179 chain 7343 chr15_KI270850v1_alt 430880 + 152660 152785 MER30 238 + 92 230 76537 12 2 0 6 4 0 7 9 28 85 chain 27054 chr15_KI270850v1_alt 430880 + 246010 246401 MLT2A1 477 + 7 391 46190 49 10 8 74 1 0 4 0 1 10 4 0 16 0 4 151 2 1 60 4 0 6 chain 9928 chr15_KI270850v1_alt 430880 + 267332 267449 LTR15 485 + 349 475 70568 102 0 9 15 chain 28550 chr15_KI270850v1_alt 430880 + 323768 324127 L1PA5 6144 + 5783 6143 44033 163 1 0 43 4 11 135 5 0 8 chain 89940 chr16_KI270856v1_alt 63982 + 60958 61987 LTR5A 1029 + 0 1029 19694 73 0 1 73 1 0 882 chain 39203 chr16_KI270855v1_alt 232857 + 31144 31958 MER9a3 513 + 0 513 35211 171 1 0 8 321 0 91 0 18 189 7 9 4 0 1 22 chain 24920 chr16_KI270855v1_alt 232857 + 127371 127669 AluSg7 307 + 5 302 49398 79 1 0 48 1 0 125 0 1 44 chain 3044 chr16_KI270855v1_alt 232857 + 149973 150030 LTR16E1 515 + 379 452 99386 14 6 23 30 1 0 6 chain 9509 chr16_KI270855v1_alt 232857 + 172876 172988 AluSg4 309 + 22 134 71452 112 chain 3749 chr16_KI270855v1_alt 232857 + 174406 174454 L1MB7 1623 + 1376 1423 93243 15 1 0 32 chain 10299 chr16_KI270855v1_alt 232857 + 189724 189843 AluSp 311 + 13 132 69805 119 chain 2976 chr16_KI270853v1_alt 2659700 + 90011 90049 MLT1H 522 + 56 94 100087 38 chain 3886 chr16_KI270853v1_alt 2659700 + 134167 134243 MER5A 189 + 36 113 92244 38 20 21 18 chain 110328 chr16_KI270853v1_alt 2659700 + 146792 148640 THE1B-int 1605 + 0 1605 17030 13 33 31 238 10 12 136 2 27 61 304 1 21 0 1 39 0 13 112 1 33 437 8 7 147 30 3 7 0 14 108 2 0 57 0 5 82 chain 92865 chr16_KI270853v1_alt 2659700 + 246561 248517 L1PB3 3668 + 1666 3031 19201 106 13 10 134 3 7 92 1 16 85 20 1 263 305 33 14 3 4 4 0 1 104 342 37 90 1 0 21 12 0 141 0 1 158 0 2 15 10 7 19 chain 3665 chr16_KI270853v1_alt 2659700 + 319294 319376 MER20 218 + 54 134 93863 21 28 26 33 chain 24369 chr16_KI270853v1_alt 2659700 + 409333 409682 THE1B 368 + 0 368 50216 44 6 21 73 0 4 27 6 5 90 0 1 42 12 12 49 chain 13067 chr16_KI270853v1_alt 2659700 + 422256 422469 L1PA8 5853 + 5638 5847 64992 40 16 14 45 7 6 17 1 0 87 chain 197245 chr16_KI270853v1_alt 2659700 + 673680 675903 L1PA4 6152 + 3290 5517 9799 624 1 2 180 1 0 1208 0 4 209 chain 26972 chr16_KI270853v1_alt 2659700 + 762052 762459 MER57A1 433 + 0 410 46309 232 0 1 8 2 3 28 49 50 88 chain 29601 chr16_KI270853v1_alt 2659700 + 968961 969845 L1MA3 4352 + 3739 4310 42482 197 0 18 107 86 76 42 1 0 27 371 53 23 2 1 5 1 0 22 chain 14470 chr16_KI270853v1_alt 2659700 + 974914 975290 MLT1B 390 + 31 385 62937 24 1 0 57 174 153 120 chain 43183 chr16_KI270853v1_alt 2659700 + 989515 990061 MLT2A2 560 + 0 560 32661 194 10 13 201 0 11 141 chain 43744 chr16_KI270853v1_alt 2659700 + 1046828 1047679 MER41A 554 + 13 553 32291 52 0 1 367 312 0 120 chain 112808 chr16_KI270853v1_alt 2659700 + 1050001 1051252 L1PA5 6144 + 4622 5872 16702 755 1 0 495 chain 27547 chr16_KI270853v1_alt 2659700 + 1067287 1067696 LTR7B 505 + 7 495 45516 31 1 2 49 0 3 16 0 10 57 0 38 12 3 28 25 0 2 38 0 1 40 1 0 29 0 1 52 14 13 41 chain 2884 chr16_KI270853v1_alt 2659700 + 1158605 1158639 MER33 330 + 43 77 100967 34 chain 2921 chr16_KI270853v1_alt 2659700 + 1183744 1183792 MLT2B4 540 + 479 538 100666 12 6 17 30 chain 8112 chr16_KI270853v1_alt 2659700 + 1188175 1188298 MER85 139 + 5 139 74611 66 8 9 14 0 10 35 chain 5305 chr16_KI270853v1_alt 2659700 + 1291312 1291370 MER107 203 + 0 58 84173 58 chain 59332 chr16_KI270853v1_alt 2659700 + 1313502 1314149 L1PA3long 6157 + 5509 6156 26554 647 chain 3242 chr16_KI270853v1_alt 2659700 + 1373549 1373590 L1MB8 1703 + 1545 1586 97555 41 chain 3352 chr16_KI270853v1_alt 2659700 + 1433292 1433330 MER58A 224 + 42 80 96579 38 chain 27840 chr16_KI270853v1_alt 2659700 + 1479631 1479923 AluYb8 318 + 10 302 45122 292 chain 16247 chr16_KI270853v1_alt 2659700 + 1503176 1503408 MER30 238 + 0 238 60690 106 5 14 78 8 5 35 chain 3297 chr16_KI270853v1_alt 2659700 + 1572805 1572842 L1PB3 3668 + 3529 3566 97036 37 chain 76945 chr16_KI270853v1_alt 2659700 + 1575829 1576817 L1PA6 6164 + 5190 6161 22331 390 20 10 160 0 1 177 0 1 79 2 0 7 1 4 108 19 9 25 chain 4381 chr16_KI270853v1_alt 2659700 + 1597667 1597740 MER20 218 + 6 79 88992 12 5 6 7 1 0 48 chain 4348 chr16_KI270853v1_alt 2659700 + 1678342 1678388 MER58A 224 + 37 83 89192 46 chain 22524 chr16_KI270853v1_alt 2659700 + 1706614 1706895 AluSp 311 + 13 296 53084 78 0 3 183 5 4 15 chain 19769 chr16_KI270853v1_alt 2659700 + 1819797 1820150 THE1D 372 + 4 372 56712 124 0 4 19 85 95 43 0 2 16 2 0 4 0 1 60 chain 37869 chr16_KI270853v1_alt 2659700 + 1850966 1851424 MER41A 554 + 2 461 36164 250 0 1 208 chain 25303 chr16_KI270853v1_alt 2659700 + 2140542 2140879 THE1B 368 + 25 368 48777 15 0 5 123 2 0 28 1 3 103 1 2 64 chain 24498 chr16_KI270853v1_alt 2659700 + 2164562 2164911 THE1B 368 + 0 368 50024 44 6 21 73 0 4 27 5 4 91 0 1 42 12 12 49 chain 13189 chr16_KI270853v1_alt 2659700 + 2177483 2177696 L1PA8 5853 + 5638 5847 64798 40 16 14 45 7 6 17 1 0 87 chain 65012 chr16_KI270853v1_alt 2659700 + 2237259 2237982 L1PA4 6152 + 4472 5195 25186 723 chain 44444 chr16_KI270853v1_alt 2659700 + 2273125 2273679 MLT2A2 560 + 0 560 31861 66 0 2 115 1 0 81 0 3 16 0 1 35 0 1 240 chain 19908 chr16_KI270853v1_alt 2659700 + 2286639 2286922 AluSp 311 + 22 306 56515 101 38 39 144 chain 18886 chr16_KI270853v1_alt 2659700 + 2294932 2295296 THE1B 368 + 0 368 57654 166 125 129 73 chain 23625 chr16_KI270853v1_alt 2659700 + 2324404 2324788 THE1D 372 + 0 372 51390 28 5 0 28 13 4 14 4 5 87 32 34 27 1 0 145 chain 44103 chr16_KI270853v1_alt 2659700 + 2349950 2350461 L1PA6 6164 + 2547 3059 32081 260 0 1 251 chain 3375 chr16_KI270853v1_alt 2659700 + 2359273 2359312 MLT1C 463 + 49 88 96346 39 chain 16714 chr16_KI270853v1_alt 2659700 + 2399537 2399858 THE1C 375 + 14 336 60136 30 3 4 5 1 0 34 47 52 45 1 2 41 22 17 92 chain 6386 chr16_KI270853v1_alt 2659700 + 2462005 2462111 MER20 218 + 44 151 79721 36 15 16 55 chain 20124 chr16_KI270853v1_alt 2659700 + 2539782 2540009 L1PA3long 6157 + 5916 6149 56228 85 0 7 107 1 0 34 chain 3374 chr16_KI270853v1_alt 2659700 + 2552068 2552128 MER51E 476 + 131 193 96361 25 11 13 24 chain 63593 chr16_GL383556v1_alt 192462 + 28306 28987 L1PA2 6032 + 5351 6032 25505 681 chain 27781 chr16_GL383556v1_alt 192462 + 79730 80135 MSTA 426 + 15 426 45208 78 10 11 16 0 1 7 0 1 4 1 0 21 0 6 76 23 21 169 chain 23372 chr16_GL383556v1_alt 192462 + 83866 84226 THE1B 368 + 2 368 51814 33 0 5 129 1 0 9 32 36 16 1 0 12 9 8 118 chain 41869 chr16_GL383556v1_alt 192462 + 114779 115318 LTR10F 562 + 0 562 33444 192 0 28 11 3 0 158 9 11 98 8 4 60 chain 55941 chr16_GL383556v1_alt 192462 + 115691 116408 MER4E1 777 + 66 769 27579 87 0 1 18 0 1 369 32 16 211 chain 3909 chr16_GL383556v1_alt 192462 + 123579 123753 MER20 218 + 23 217 92057 33 114 134 27 chain 9323 chr16_GL383556v1_alt 192462 + 192160 192390 MER57C2 434 + 0 261 71868 25 72 71 80 22 54 31 chain 9580 chr16_GL383557v1_alt 89672 + 54054 54161 U6 107 + 0 107 71309 107 chain 84988 chr17_GL383563v3_alt 375691 + 26910 27973 MER11C 1089 + 0 1089 20620 220 0 5 39 12 15 40 1 18 49 0 1 199 12 13 477 1 0 13 chain 44906 chr17_GL383563v3_alt 375691 + 124762 125275 MER9a2 513 + 0 513 31635 513 chain 38359 chr17_GL383563v3_alt 375691 + 175741 176186 L1PA5 6144 + 5700 6144 35806 275 0 1 156 3 1 11 chain 18453 chr17_GL383563v3_alt 375691 + 236738 237044 Tigger2 2703 + 2363 2629 58161 18 45 0 186 11 13 34 0 3 12 chain 66911 chr17_GL383563v3_alt 375691 + 240528 241290 L1PA4 6152 + 5379 6141 24718 161 0 1 502 1 0 98 chain 6555 chr17_GL383563v3_alt 375691 + 319603 319970 L1MC2 1988 + 1602 1979 79142 9 4 0 44 193 212 38 30 27 14 8 7 4 1 0 22 chain 97128 chr17_GL383563v3_alt 375691 + 334927 336097 LTR12C 1709 + 0 1709 18645 379 0 117 296 9 325 29 0 1 77 0 4 215 0 101 165 chain 13307 chr17_KI270862v1_alt 391357 + 5442 5969 MER30 238 + 0 232 64605 18 12 13 76 9 22 33 313 4 66 chain 81205 chr17_KI270862v1_alt 391357 + 21036 22023 LTR13 1007 + 0 1007 21391 381 2 3 62 1 0 49 17 21 140 0 10 149 0 1 93 0 5 93 chain 6759 chr17_KI270862v1_alt 391357 + 173151 173258 L1PA8 5853 + 5656 5760 78446 22 2 1 11 1 0 48 4 3 19 chain 4467 chr17_KI270862v1_alt 391357 + 194699 194753 MIR 256 + 66 120 88506 54 chain 20045 chr17_KI270861v1_alt 196688 + 29094 29383 AluSc 308 + 0 296 56317 64 0 8 54 1 0 10 5 8 5 1 0 5 2 0 37 4 4 101 chain 3768 chr17_KI270857v1_alt 2877074 + 11047 11090 MER53 195 - 128 171 93078 43 chain 12672 chr17_KI270857v1_alt 2877074 + 121272 121459 MER44A 345 + 121 312 65675 53 0 4 57 0 5 15 10 0 9 3 8 40 chain 11426 chr17_KI270857v1_alt 2877074 + 122721 124250 7SK 245 + 0 245 67869 59 1366 82 104 chain 23696 chr17_KI270857v1_alt 2877074 + 132177 132477 AluSc 308 + 0 295 51281 78 0 5 160 9 0 14 2 1 37 chain 26083 chr17_KI270857v1_alt 2877074 + 138879 139246 MER4B 649 + 0 409 47601 111 1 0 19 24 63 172 0 4 40 chain 4590 chr17_KI270857v1_alt 2877074 + 166747 166845 LTR25 836 + 496 557 87840 48 37 0 13 chain 3548 chr17_KI270857v1_alt 2877074 + 170129 170178 LTR25 836 + 59 107 94863 9 2 1 38 chain 3418 chr17_KI270857v1_alt 2877074 + 178775 178815 MLT1K 546 + 496 536 95917 40 chain 12238 chr17_KI270857v1_alt 2877074 + 228875 229026 L1PA16 3655 + 1846 1997 66397 151 chain 17936 chr17_KI270857v1_alt 2877074 + 246000 246411 HUERS-P2-int 2744 + 2349 2742 58713 91 1 0 4 21 24 64 2 0 12 4 0 10 26 26 12 1 0 5 28 25 31 3 0 13 10 9 14 1 0 8 3 1 5 2 0 12 2 0 19 0 1 7 chain 4915 chr17_KI270857v1_alt 2877074 + 285533 285594 L1PA17 2846 + 22 82 86084 14 1 0 46 chain 21345 chr17_KI270857v1_alt 2877074 + 346429 346760 MLT2A1 477 + 19 477 54711 123 8 9 18 1 5 82 0 92 32 1 0 5 11 43 29 1 0 20 chain 325575 chr17_KI270857v1_alt 2877074 + 346760 350785 HERVL-int 5654 + 0 5654 6292 210 1 0 147 1 3 379 3 5 110 69 0 12 0 5 426 0 1 4 1 0 9 0 1179 52 0 1 459 0 7 491 0 1 87 1 15 173 0 12 574 0 1 297 0 484 6 0 1 63 1 2 5 13 0 213 0 1 82 1 2 135 chain 32076 chr17_KI270857v1_alt 2877074 + 350785 351265 MLT2A1 477 + 0 477 40290 72 0 2 68 0 1 25 1 5 212 62 53 20 1 0 19 chain 34211 chr17_KI270857v1_alt 2877074 + 353974 354427 MER1A 529 + 64 520 38556 17 0 4 11 2 0 361 13 14 49 chain 85135 chr17_KI270857v1_alt 2877074 + 355467 356544 L1PA8 5853 + 4779 5853 20596 232 2 0 82 0 1 425 0 3 42 1 0 45 2 0 70 1 0 8 5 4 18 0 2 29 3 2 14 5 4 93 chain 73970 chr17_KI270857v1_alt 2877074 + 374965 375937 LTR5_Hs 974 + 0 974 23100 288 0 1 178 0 1 173 16 15 123 11 7 33 8 15 19 20 18 103 chain 3414 chr17_KI270857v1_alt 2877074 + 452225 452274 MLT2A1 477 + 200 250 95967 10 1 2 38 chain 392152 chr17_KI270857v1_alt 2877074 + 452590 457390 HERVL-int 5654 + 0 4757 5286 701 0 1 135 0 1 13 24 3 23 48 0 198 0 1 1221 0 3 18 0 1 141 12 4 263 0 3 770 0 1 56 0 1 438 0 6 432 6 5 180 0 17 121 chain 22795 chr17_KI270857v1_alt 2877074 + 466258 466505 L1PA3long 6157 + 5910 6157 52674 247 chain 6124 chr17_KI270857v1_alt 2877074 + 580463 580602 Tigger3b 1229 + 58 319 80637 49 34 161 8 4 0 14 1 0 29 chain 22795 chr17_KI270857v1_alt 2877074 + 590129 590376 L1PA3long 6157 + 5910 6157 52673 247 chain 2842 chr17_KI270857v1_alt 2877074 + 844417 844449 MIRc 230 + 146 178 101290 32 chain 23511 chr17_KI270857v1_alt 2877074 + 850884 851177 AluSp 311 + 3 297 51573 60 0 2 67 1 0 165 chain 5708 chr17_KI270857v1_alt 2877074 + 875292 875399 MER5A 189 + 0 119 82301 21 1 0 6 0 1 13 13 23 12 3 5 38 chain 7394 chr17_KI270857v1_alt 2877074 + 974105 974245 L1MA6 2487 + 2141 2273 76406 11 0 2 25 0 6 42 34 18 28 chain 29897 chr17_KI270857v1_alt 2877074 + 1011529 1011974 L1PA15 4387 + 3855 4287 42140 35 2 0 42 1 0 52 0 1 15 0 1 75 1 0 28 1 0 27 2 1 53 1 0 21 4 0 12 1 0 49 6 3 17 chain 3742 chr17_KI270857v1_alt 2877074 + 1012668 1012716 MLT1J1 437 + 116 163 93317 29 1 0 18 chain 70478 chr17_KI270857v1_alt 2877074 + 1088438 1089284 L1PA8A 6298 + 5442 6291 23872 47 1 7 520 3 0 275 chain 40544 chr17_KI270857v1_alt 2877074 + 1151942 1152418 L1PA7 6471 + 5985 6462 34274 152 1 2 323 chain 56288 chr17_KI270857v1_alt 2877074 + 1233670 1234569 L1PB1 5432 + 4540 5413 27487 69 8 13 83 0 2 339 0 1 5 1 0 51 7 6 5 1 0 20 1 0 13 16 11 9 2 0 46 0 1 6 19 17 44 1 0 15 4 0 7 15 6 18 16 13 6 2 0 24 1 0 21 2 1 12 1 0 9 chain 24367 chr17_KI270857v1_alt 2877074 + 1309060 1309369 L1PA8A 6298 + 5980 6290 50220 166 0 4 37 1 0 4 7 5 94 chain 12410 chr17_KI270857v1_alt 2877074 + 1366434 1366572 L1PA4 6152 + 6013 6151 66120 138 chain 25700 chr17_KI270857v1_alt 2877074 + 1517996 1518419 MSTB 430 + 0 430 48169 24 1 0 98 0 1 75 78 85 147 chain 23336 chr17_KI270857v1_alt 2877074 + 1560395 1560687 AluSp 311 + 10 297 51869 13 9 5 97 1 0 172 chain 70949 chr17_KI270857v1_alt 2877074 + 1568954 1569758 HERV17-int 4347 + 3547 4347 23768 300 0 1 95 5 0 404 chain 27454 chr17_KI270857v1_alt 2877074 + 1572361 1572687 LTR17 781 + 0 326 45630 326 chain 5916 chr17_KI270857v1_alt 2877074 + 1572988 1573074 MER5A 189 + 2 93 81414 29 3 9 33 1 0 20 chain 25723 chr17_KI270857v1_alt 2877074 + 1582733 1583035 THE1B-int 1605 + 1295 1597 48138 302 chain 26170 chr17_KI270857v1_alt 2877074 + 1583043 1583397 THE1B 368 + 0 368 47473 30 9 24 118 3 2 194 chain 76558 chr17_KI270857v1_alt 2877074 + 1615596 1616433 L1PA3long 6157 + 5315 6152 22424 837 chain 120322 chr17_KI270857v1_alt 2877074 + 1804517 1805821 SVA_F 1814 + 278 1814 15476 423 0 40 120 0 114 34 0 78 727 chain 80714 chr17_KI270857v1_alt 2877074 + 1812869 1814003 L1MA3 4352 + 2539 3665 21485 50 8 7 64 6 1 26 0 2 119 15 0 168 2 7 65 16 17 70 0 1 146 0 4 379 chain 3658 chr17_KI270857v1_alt 2877074 + 1851099 1851147 Tigger3 1187 + 690 742 93932 7 0 1 31 0 3 10 chain 63074 chr17_KI270857v1_alt 2877074 + 1919290 1919997 L1PA5 6144 + 5433 6141 25608 556 0 1 151 chain 45472 chr17_KI270857v1_alt 2877074 + 2020228 2020863 Tigger1 2417 + 1164 1781 31320 57 0 1 254 2 3 10 0 1 163 7 24 60 38 0 44 chain 82070 chr17_KI270857v1_alt 2877074 + 2096679 2097734 MER11C 1089 + 0 1069 21231 228 0 1 35 0 3 267 65 65 105 0 2 75 1 9 279 chain 6726 chr17_KI270857v1_alt 2877074 + 2097923 2098060 MER47B 469 + 178 360 78557 36 32 78 10 2 1 57 chain 7029 chr17_KI270857v1_alt 2877074 + 2105537 2105712 L1PB1 5432 + 5270 5422 77501 11 3 0 15 1 0 4 23 12 14 9 6 14 2 0 24 2 1 20 1 0 13 1 0 18 chain 26805 chr17_KI270857v1_alt 2877074 + 2117414 2117706 AluYk11 308 + 0 292 46534 292 chain 76163 chr17_KI270857v1_alt 2877074 + 2151240 2152505 L1PA8 5853 + 4859 5853 22522 23 10 6 120 0 5 265 0 2 15 272 4 265 1 0 6 0 1 39 2 0 69 1 0 14 1 0 47 2 1 16 9 8 88 chain 6124 chr17_KI270857v1_alt 2877074 + 2184778 2184917 Tigger3b 1229 + 58 319 80636 49 34 161 8 4 0 14 1 0 29 chain 22664 chr17_KI270857v1_alt 2877074 + 2194458 2194705 L1PA3long 6157 + 5910 6157 52873 247 chain 17946 chr17_KI270857v1_alt 2877074 + 2230566 2230774 L1PA6 6164 + 5936 6144 58705 208 chain 59258 chr17_KI270857v1_alt 2877074 + 2288477 2289110 SVA_F 1814 + 1181 1814 26579 633 chain 28585 chr17_KI270857v1_alt 2877074 + 2299579 2299882 AluYa5 310 + 0 302 43981 132 1 0 170 chain 11572 chr17_KI270857v1_alt 2877074 + 2375532 2376013 MER39 703 + 548 703 67620 39 330 0 61 0 4 51 chain 13317 chr17_KI270857v1_alt 2877074 + 2412146 2412361 Tigger4a 237 + 1 224 64593 24 0 1 8 5 12 65 8 0 9 8 16 88 chain 164483 chr17_KI270857v1_alt 2877074 + 2665527 2667586 SVA_D 2077 + 12 2060 11457 530 0 80 101 0 3 35 3 0 147 11 9 27 21 10 39 1 0 27 0 100 268 0 1 1 137 0 11 41 0 659 chain 1269 chr17_KI270857v1_alt 2877074 + 2666744 2666772 SVA_D 2077 + 1043 1071 52609 28 chain 6802 chr17_KI270857v1_alt 2877074 + 2666772 2666875 SVA_D 2077 + 1423 1476 65782 13 50 0 40 chain 3711 chr17_KI270857v1_alt 2877074 + 2666795 2666835 SVA_D 2077 + 1044 1084 66381 40 chain 1336 chr17_KI270857v1_alt 2877074 + 2666886 2666927 SVA_D 2077 + 1262 1303 56768 41 chain 2989 chr17_KI270857v1_alt 2877074 + 2773270 2773303 MER5A1 166 + 98 131 99972 33 chain 17740 chr17_KI270857v1_alt 2877074 + 2847747 2847959 AluSp 311 + 83 295 58961 212 chain 21769 chr17_JH159146v1_alt 278131 + 3071 3329 L1PA7 6471 + 6211 6468 54142 129 1 0 128 chain 2832 chr17_JH159146v1_alt 278131 + 40972 41016 MamRep4096 390 + 34 75 101394 4 1 0 30 2 0 7 chain 22613 chr17_JH159146v1_alt 278131 + 100065 100366 AluSp 311 + 14 304 52964 111 24 13 166 chain 5741 chr17_JH159146v1_alt 278131 + 135568 135631 L1PA2 6032 + 5927 5990 82170 63 chain 15299 chr17_JH159146v1_alt 278131 + 159549 159757 MER30 238 + 0 238 61917 15 0 18 74 4 16 115 chain 16989 chr17_JH159146v1_alt 278131 + 206968 207242 L1PA15 4387 + 4066 4327 59816 38 2 1 26 1 0 54 1 0 15 4 0 17 1 0 52 4 1 44 3 1 12 chain 17715 chr17_JH159146v1_alt 278131 + 230417 230624 L1PA5 6144 + 5928 6135 58991 207 chain 74796 chr17_JH159146v1_alt 278131 + 235880 236734 L1PA4 6152 + 5295 6152 22892 334 0 1 365 1 0 13 0 1 77 0 2 64 chain 44652 chr17_JH159146v1_alt 278131 + 239092 239636 L1PA8A 6298 + 5734 6278 31764 544 chain 147287 chr17_JH159146v1_alt 278131 + 241388 243284 MER4-int 2692 + 4 1986 12529 7 1 0 25 2 0 63 2 0 6 2 0 8 1 3 9 3 0 533 0 1 24 0 75 23 1 14 767 1 0 8 0 1 91 7 12 312 chain 33309 chr17_JH159146v1_alt 278131 + 244971 245421 MER4A1 472 + 0 470 39250 220 0 1 5 5 26 11 1 0 5 8 7 186 1 0 4 0 1 4 chain 34633 chr17_JH159146v1_alt 278131 + 257170 257641 MER4A1 472 + 0 472 38263 268 15 14 114 7 9 67 chain 45466 chr17_JH159146v1_alt 278131 + 259153 259697 L1PA8A 6298 + 5734 6278 31325 544 chain 188389 chr17_JH159146v1_alt 278131 + 261785 265345 MER4-int 2692 + 4 2692 10192 7 1 0 21 6 4 14 24 25 23 3 1 6 2 0 9 0 2 542 0 1 24 0 75 20 0 18 124 4 5 273 0 3 245 0 1 5 9 9 16 1 2 83 1 0 8 0 1 411 965 0 37 23 20 103 7 6 115 3 1 8 0 1 56 4 3 351 0 3 6 chain 35106 chr17_JH159146v1_alt 278131 + 265355 265804 MER4A1 472 + 2 472 37954 218 0 1 9 4 25 13 8 7 197 chain 16724 chr17_JH159146v1_alt 278131 + 270719 270901 L1PA5 6144 + 5962 6144 60128 182 chain 19415 chr17_JH159146v1_alt 278131 + 275189 275436 L1PA8 5853 + 5609 5853 57114 72 1 0 59 2 1 22 1 0 90 chain 21510 chr17_JH159146v1_alt 278131 + 277818 278131 L1PB 1623 + 144 450 54497 34 2 0 10 7 4 77 1 0 118 0 1 10 2 1 19 1 0 32 chain 46241 chr17_GL383564v2_alt 133151 + 4640 5680 L1PB1 5432 + 4708 5420 30944 96 1 0 299 323 15 29 1 0 7 8 4 9 2 0 53 19 17 44 1 0 15 3 0 11 5 1 19 8 5 16 2 0 22 1 0 21 10 14 15 chain 2846 chr17_GL383564v2_alt 133151 + 16527 16561 LTR24B 570 + 536 570 101271 34 chain 39786 chr17_GL383564v2_alt 133151 + 78767 79229 L1PA7 6471 + 6005 6467 34830 462 chain 70949 chr17_GL383564v2_alt 133151 + 97560 98430 MER11D 897 + 0 897 23767 156 1 3 417 1 24 131 5 2 50 0 1 70 0 4 39 chain 16656 chr17_GL383564v2_alt 133151 + 103269 103553 MER1A 529 + 248 529 60207 192 64 61 28 chain 116022 chr17_GL000258v2_alt 1821992 + 38421 40070 L1PB2 3958 + 2200 3838 16230 21 12 16 242 1 3 6 17 0 292 1 5 106 0 1 29 0 3 378 0 1 4 2 0 51 0 3 12 7 0 66 2 0 12 4 0 19 0 8 25 66 65 110 2 1 69 9 7 20 1 0 63 chain 10710 chr17_GL000258v2_alt 1821992 + 84378 84535 MER115 684 + 502 662 69030 82 0 1 44 11 12 14 0 1 6 chain 9449 chr17_GL000258v2_alt 1821992 + 115095 115294 L1PB1 5432 + 5238 5412 71607 41 2 1 16 8 0 15 8 0 15 25 20 24 1 0 22 1 0 12 1 0 8 chain 75965 chr17_GL000258v2_alt 1821992 + 216321 217162 SVA_C 1631 + 647 1620 22589 200 0 134 37 1 0 19 1 0 583 chain 6800 chr17_GL000258v2_alt 1821992 + 261050 261194 MER58A 224 + 44 189 78324 74 49 50 21 chain 44592 chr17_GL000258v2_alt 1821992 + 284552 285091 L1PA7 6471 + 5892 6465 31791 64 0 24 30 0 2 92 0 9 202 1 0 150 chain 3658 chr17_GL000258v2_alt 1821992 + 295156 295244 L1PB3 3668 + 3482 3566 93928 15 1 0 6 29 26 37 chain 29776 chr17_GL000258v2_alt 1821992 + 341788 342098 AluYg6 310 + 0 310 42270 310 chain 75965 chr17_GL000258v2_alt 1821992 + 434256 435097 SVA_C 1631 + 647 1620 22588 200 0 134 37 1 0 19 1 0 583 chain 6800 chr17_GL000258v2_alt 1821992 + 478994 479138 MER58A 224 + 44 189 78323 74 49 50 21 chain 49545 chr17_GL000258v2_alt 1821992 + 482958 483542 LTR10C 591 + 0 591 29750 31 0 1 10 0 4 462 0 2 81 chain 9377 chr17_GL000258v2_alt 1821992 + 487490 487598 L1PA8A 6298 + 6179 6287 71755 108 chain 5964 chr17_GL000258v2_alt 1821992 + 497918 497988 MER41B 635 + 170 250 81217 16 0 10 54 chain 80575 chr17_GL000258v2_alt 1821992 + 502034 503002 LTR5_Hs 974 + 0 974 21518 285 0 1 536 5 12 37 2 0 103 chain 24520 chr17_GL000258v2_alt 1821992 + 525667 525949 AluSp 311 + 10 292 49996 282 chain 133141 chr17_GL000258v2_alt 1821992 + 532820 534321 SVA_D 2077 + 0 2073 13731 13 0 1 444 0 39 399 12 506 10 0 1 26 1 0 52 0 37 404 0 1 140 chain 22289 chr17_GL000258v2_alt 1821992 + 545131 545406 AluSg7 307 + 29 305 53424 102 1 2 172 chain 8309 chr17_GL000258v2_alt 1821992 + 571713 571813 HY3 101 + 0 100 74141 100 chain 16028 chr17_GL000258v2_alt 1821992 + 575377 575590 MER30 238 + 0 229 60994 108 4 19 32 0 1 69 chain 24412 chr17_GL000258v2_alt 1821992 + 605238 605526 AluSq10 312 + 10 296 50150 118 2 0 168 chain 23798 chr17_GL000258v2_alt 1821992 + 618332 618631 AluSp 311 + 0 297 51111 30 4 0 233 0 2 32 chain 25497 chr17_GL000258v2_alt 1821992 + 769221 769584 THE1B 368 + 0 368 48486 61 8 9 99 1 0 29 0 3 6 3 7 10 7 6 10 1 0 128 chain 14409 chr17_GL000258v2_alt 1821992 + 823969 824129 L1PA5 6144 + 5984 6144 63021 160 chain 69855 chr17_GL000258v2_alt 1821992 + 830952 831726 L1PA5 6144 + 5362 6135 24028 529 1 0 244 chain 25205 chr17_GL000258v2_alt 1821992 + 874974 875309 THE1B 368 + 26 368 48938 18 0 15 113 1 0 28 10 4 89 1 0 75 chain 17661 chr17_GL000258v2_alt 1821992 + 909303 909909 Tigger3b 1229 + 814 1103 59052 119 364 46 47 8 9 68 chain 4522 chr17_GL000258v2_alt 1821992 + 913015 913095 L1MC1 2226 + 1967 2043 88203 13 16 12 51 chain 50182 chr17_GL000258v2_alt 1821992 + 922128 922824 MER4A 717 + 0 692 29492 12 6 5 63 0 1 40 5 0 276 0 1 44 2 1 5 0 1 40 3 1 148 10 12 42 chain 31797 chr17_GL000258v2_alt 1821992 + 925686 926302 LTR12F 595 + 0 595 40498 31 0 1 71 6 1 25 8 23 17 23 71 13 24 0 19 24 0 116 1 0 2 28 0 48 56 53 104 chain 17288 chr17_GL000258v2_alt 1821992 + 975926 976171 MER2 342 + 89 329 59474 26 0 1 42 11 5 166 chain 24155 chr17_GL000258v2_alt 1821992 + 1027074 1027368 AluSp 311 + 5 299 50566 294 chain 28989 chr17_GL000258v2_alt 1821992 + 1044622 1044995 THE1B 368 + 0 368 43347 172 3 1 21 2 0 99 1 0 75 chain 5058 chr17_GL000258v2_alt 1821992 + 1093968 1094328 L1MB7 1623 + 1323 1602 85367 14 52 47 38 79 56 15 122 70 34 1 0 5 chain 26184 chr17_GL000258v2_alt 1821992 + 1102727 1103027 L1PA4 6152 + 5851 6151 47453 47 1 0 57 0 1 195 chain 47406 chr17_GL000258v2_alt 1821992 + 1113795 1114334 L1PA5 6144 + 5592 6132 30505 54 0 1 485 chain 29050 chr17_GL000258v2_alt 1821992 + 1116512 1117281 LTR12F 595 + 3 588 43250 86 294 101 20 7 16 34 0 24 82 0 1 12 0 1 12 18 0 9 0 2 6 13 13 23 20 9 66 1 2 66 chain 35100 chr17_GL000258v2_alt 1821992 + 1159551 1160098 MER1A 529 + 0 529 37958 16 31 27 79 6 0 95 4 6 23 0 1 83 0 1 29 1 0 69 3 4 22 4 0 5 7 0 7 1 0 62 chain 3203 chr17_GL000258v2_alt 1821992 + 1172409 1172445 tRNA-Tyr-TAC 38 + 1 37 97872 36 chain 33049 chr17_GL000258v2_alt 1821992 + 1193232 1193660 MLT2A1 477 + 0 476 39479 169 4 1 9 0 1 20 0 6 178 12 56 36 chain 7600 chr17_GL000258v2_alt 1821992 + 1198820 1198948 MLT1A 405 + 237 365 75870 36 0 16 10 24 8 58 chain 20545 chr17_GL000258v2_alt 1821992 + 1200861 1203566 L1PB1 5432 + 4997 5420 55723 106 1 2 10 3 0 19 1 0 13 1 0 9 2 0 3 2 0 7 2254 4 50 2 1 16 2 1 42 1 0 16 3 0 6 16 6 16 27 22 24 1 0 22 1 0 12 1 0 16 chain 165873 chr17_GL000258v2_alt 1821992 + 1235105 1238273 SVA_F 1814 + 10 1814 11341 744 40 0 131 1337 0 62 0 15 39 2 0 10 1 0 110 0 1 692 chain 34260 chr17_GL000258v2_alt 1821992 + 1236022 1236461 SVA_F 1814 + 886 1291 38518 44 0 1 16 0 15 5 49 0 307 1 0 17 chain 4053 chr17_GL000258v2_alt 1821992 + 1236087 1236136 SVA_F 1814 + 1016 1143 55421 8 5 83 36 chain 9477 chr17_GL000258v2_alt 1821992 + 1236461 1236681 SVA_F 1814 + 989 1209 42445 220 chain 13904 chr17_GL000258v2_alt 1821992 + 1236681 1236838 SVA_F 1814 + 984 1138 58320 17 1 0 10 1 0 117 1 0 10 chain 2150 chr17_GL000258v2_alt 1821992 + 1236839 1236917 SVA_F 1814 + 1011 1089 57098 78 chain 33890 chr17_GL000258v2_alt 1821992 + 1236917 1237300 SVA_F 1814 + 898 1291 38794 49 0 15 39 1 0 10 1 0 166 1 0 10 1 0 87 1 0 17 chain 6086 chr17_GL000258v2_alt 1821992 + 1243758 1243828 MER41B 635 + 170 250 80779 16 0 10 54 chain 79978 chr17_GL000258v2_alt 1821992 + 1247875 1248843 LTR5_Hs 974 + 0 974 21630 285 0 1 533 8 15 37 2 0 103 chain 24793 chr17_GL000258v2_alt 1821992 + 1267115 1267400 AluSp 311 + 10 295 49597 285 chain 8309 chr17_GL000258v2_alt 1821992 + 1350719 1350819 HY3 101 + 0 100 74140 100 chain 16242 chr17_GL000258v2_alt 1821992 + 1354380 1354593 MER30 238 + 0 229 60701 108 4 19 32 0 1 69 chain 24281 chr17_GL000258v2_alt 1821992 + 1387698 1387986 AluSq10 312 + 10 296 50370 118 2 0 168 chain 23707 chr17_GL000258v2_alt 1821992 + 1400764 1401062 AluSp 311 + 0 296 51267 30 4 0 233 0 2 31 chain 6497 chr17_GL000258v2_alt 1821992 + 1437240 1437317 MER41B 635 + 163 250 79365 23 0 10 54 chain 78631 chr17_GL000258v2_alt 1821992 + 1441365 1442327 LTR5_Hs 974 + 0 974 21951 285 0 1 536 5 12 37 2 0 20 0 6 77 chain 33049 chr17_GL000258v2_alt 1821992 + 1466666 1467094 MLT2A1 477 + 0 476 39478 169 4 1 9 0 1 20 0 6 178 12 56 36 chain 7600 chr17_GL000258v2_alt 1821992 + 1472255 1472383 MLT1A 405 + 237 365 75869 36 0 16 10 24 8 58 chain 20549 chr17_GL000258v2_alt 1821992 + 1474301 1477004 L1PB1 5432 + 4997 5420 55716 106 1 2 10 3 0 19 1 0 13 1 0 9 2 0 3 2 0 7 2252 4 50 2 1 16 2 1 42 1 0 16 3 0 6 16 6 16 27 22 24 1 0 22 1 0 12 1 0 16 chain 22823 chr17_GL000258v2_alt 1821992 + 1551763 1552051 AluSc 308 + 7 297 52628 71 2 1 62 1 4 152 chain 30443 chr17_GL000258v2_alt 1821992 + 1691609 1692021 MER1A 529 + 0 429 41635 16 9 21 43 8 12 6 0 1 330 chain 17401 chr17_GL000258v2_alt 1821992 + 1746575 1746895 Tigger4b 360 + 3 338 59353 59 15 16 30 42 37 26 5 6 42 0 2 72 1 17 28 chain 23310 chr17_GL000258v2_alt 1821992 + 1766400 1766671 AluYc3 301 + 8 280 51917 105 1 2 165 chain 27424 chr17_GL000258v2_alt 1821992 + 1790591 1791021 LTR12F 595 + 11 595 45671 80 5 18 5 1 0 32 6 94 46 0 64 34 9 1 7 11 0 100 0 9 94 chain 48071 chr17_GL383565v1_alt 223995 + 24741 25302 L1PA7 6471 + 5909 6469 30270 549 1 0 11 chain 16211 chr17_GL383565v1_alt 223995 + 42443 42646 MER107 203 + 0 203 60726 203 chain 565139 chr17_GL383565v1_alt 223995 + 54993 61004 L1HS 6032 + 21 6032 91 6011 chain 25107 chr17_GL383565v1_alt 223995 + 89056 89711 THE1A 353 + 0 342 49103 111 1 0 93 333 21 117 chain 21116 chr17_GL383565v1_alt 223995 + 99386 99698 THE1C-int 1605 + 1252 1585 54991 31 20 38 133 7 8 114 0 2 7 chain 568686 chr17_GL383565v1_alt 223995 + 158732 164763 L1HS 6032 + 0 6032 4 74 0 1 5957 chain 58644 chr17_KI270858v1_alt 235827 + 34554 35285 THE1B-int 1605 + 870 1605 26775 138 0 1 49 0 2 525 3 4 16 chain 20186 chr17_KI270858v1_alt 235827 + 35293 35640 THE1B 368 + 8 348 56155 36 7 8 42 1 0 17 13 14 44 35 28 96 1 0 55 chain 21379 chr17_KI270858v1_alt 235827 + 58997 59283 L1PA10 4194 + 394 679 54665 9 1 0 85 4 2 21 0 1 93 1 2 72 chain 3464 chr17_KI270858v1_alt 235827 + 94307 94359 MER3 215 + 168 215 95501 6 5 0 41 chain 49228 chr17_KI270858v1_alt 235827 + 117563 118108 L1PA2 6032 + 5489 6032 29855 530 2 0 13 chain 20510 chr17_KI270858v1_alt 235827 + 190327 190632 THE1B 368 + 0 307 55772 169 1 0 6 24 25 10 0 4 16 1 0 11 1 0 66 chain 13447 chr17_KI270858v1_alt 235827 + 203245 203445 MER107 203 + 0 202 64392 38 0 6 68 12 11 48 3 0 31 chain 20329 chr17_KI270859v1_alt 108763 + 84211 84436 L1PA4 6152 + 5916 6141 55972 225 chain 21885 chr17_GL383566v1_alt 90219 + 49596 49927 THE1D 372 + 0 313 53991 19 1 3 26 0 1 26 19 0 29 0 1 18 9 5 47 1 0 6 0 3 9 1 0 120 chain 22512 chr17_GL383566v1_alt 90219 + 82259 82531 AluSp 311 + 1 288 53105 50 0 15 222 chain 4956 chr17_KI270860v1_alt 178921 + 101072 101152 Tigger2b_Pri 1066 + 218 291 85863 5 0 1 4 1 0 44 3 0 13 4 0 6 chain 43995 chr17_KI270860v1_alt 178921 + 113433 113939 L1PA10 4194 + 3647 4150 32132 469 3 0 34 chain 12449 chr17_KI270860v1_alt 178921 + 119481 119680 Tigger2a 444 + 153 344 66071 122 36 28 41 chain 5561 chr17_KI270860v1_alt 178921 + 150289 150407 MER85 139 + 5 139 82979 38 40 56 40 chain 55684 chr18_KI270864v1_alt 111737 + 95935 96585 LTR6A 649 + 0 649 27666 435 1 0 214 chain 17860 chr18_KI270864v1_alt 111737 + 99374 100364 MER51-int 1546 + 6 789 58815 14 12 10 37 28 8 35 4 5 33 647 468 118 7 0 55 chain 28122 chr18_GL383567v1_alt 289831 + 80992 81384 LTR7 482 + 0 474 44678 101 15 14 17 0 51 41 5 37 46 0 1 139 1 0 27 chain 45092 chr18_GL383567v1_alt 289831 + 81761 82396 PABL_B 668 + 1 668 31528 63 1 9 164 1 0 24 1 0 87 4 3 34 27 33 168 0 2 20 0 19 41 chain 20789 chr18_GL383567v1_alt 289831 + 92456 92676 L1HS 6032 + 5812 6032 55376 220 chain 48159 chr18_GL383567v1_alt 289831 + 105789 106479 LTR30 714 + 2 704 30234 247 0 5 35 7 1 149 7 22 50 1 2 83 0 2 26 4 1 6 0 2 3 5 0 10 19 21 25 1 0 12 chain 64292 chr18_GL383567v1_alt 289831 + 113168 115430 HERVS71-int 4705 + 2447 4419 25351 13 32 20 9 1 0 5 1 0 12 1 0 10 4 1 39 1 0 13 1 0 41 1 0 20 2 1 39 20 16 11 1 0 21 23 17 11 1 0 15 2 0 9 1 0 13 64 49 12 2 0 30 8 6 32 3 0 8 1 0 9 1 0 13 81 7 21 1 0 20 1 0 3 1 0 8 1 0 16 139 102 6 0 4 20 67 138 12 33 25 24 21 17 11 8 12 6 1 0 18 3 1 57 25 20 6 1 0 29 1 0 32 6 3 53 9 7 11 1 0 35 1 0 12 2 0 10 1 0 11 1 0 4 4 2 5 2 0 5 1 0 29 1 0 4 2 1 6 2 0 4 1 0 21 17 13 19 1 0 7 6 4 33 4 1 22 1 0 5 0 1 12 2 0 6 1 0 25 2 0 14 1 0 23 5 0 3 24 0 34 2 1 11 4 2 13 24 19 24 0 2 19 1 0 8 1 0 8 2 1 10 6 4 17 2 0 9 2 0 21 301 212 21 2 1 14 chain 12185 chr18_GL383567v1_alt 289831 + 129837 130015 MER2 342 + 149 317 66497 83 9 0 58 1 0 27 chain 162314 chr18_GL383567v1_alt 289831 + 143068 145063 L1PA7 6471 + 0 6465 11593 54 1 0 121 0 4375 118 0 4 187 1 69 488 1 0 104 0 1 101 0 5 127 0 1 129 0 1 490 4 23 61 2 0 6 chain 21599 chr18_GL383567v1_alt 289831 + 148142 148497 THE1D 372 + 0 372 54356 55 0 1 79 7 11 16 0 1 17 33 29 14 18 25 33 0 8 83 chain 4979 chr18_GL383567v1_alt 289831 + 151990 152053 MLT1F 544 + 465 528 85757 63 chain 38589 chr18_GL383567v1_alt 289831 + 167678 168263 Tigger3b 1229 + 598 1199 35648 56 0 4 7 11 17 14 12 13 39 6 15 176 12 20 7 12 0 233 chain 13864 chr18_GL383567v1_alt 289831 + 200650 200872 MER30 238 + 0 236 63775 107 4 0 6 24 45 32 3 0 46 chain 32394 chr18_GL383567v1_alt 289831 + 202739 203291 MER57-int 2662 + 2148 2659 40044 184 2 0 65 5 0 10 33 33 64 36 21 18 2 0 6 2 1 6 3 0 27 1 0 9 5 0 33 7 0 34 chain 31224 chr18_GL383567v1_alt 289831 + 203296 203690 MER57A1 433 + 0 397 40949 152 0 1 126 0 2 116 chain 42646 chr18_GL383567v1_alt 289831 + 203781 204327 MLT2A2 560 + 0 556 32972 393 2 1 8 0 11 143 chain 10728 chr18_GL383567v1_alt 289831 + 225672 225995 L1PB1 5432 + 5117 5422 68995 21 1 0 6 1 0 13 27 21 38 10 9 11 1 0 43 2 1 16 1 0 6 17 6 18 54 61 4 1 0 13 2 1 17 chain 24501 chr18_GL383567v1_alt 289831 + 232318 232710 THE1D 372 + 0 371 50020 47 39 0 12 6 16 124 4 6 33 7 13 120 chain 63550 chr18_GL383567v1_alt 289831 + 258720 259580 MER41-int 2638 + 1726 2590 25513 28 9 0 6 0 9 82 2 0 5 4 7 229 1 0 47 1 3 209 8 7 86 10 11 12 0 1 86 0 1 35 chain 40628 chr18_GL383567v1_alt 289831 + 259617 260161 MER41B 635 + 0 548 34200 107 21 22 297 0 3 32 14 13 37 0 1 36 chain 10030 chr18_GL383567v1_alt 289831 + 267022 267156 Tigger2a 444 + 217 353 70357 11 0 3 4 1 0 118 chain 16168 chr18_GL383567v1_alt 289831 + 284590 284785 MER107 203 + 3 203 60790 158 0 5 37 chain 27484 chr18_GL383570v1_alt 164789 + 32092 32471 THE1C 375 + 0 375 45598 107 16 13 62 1 2 6 1 0 160 1 0 25 chain 16955 chr18_GL383570v1_alt 164789 + 39734 39932 MER107 203 + 0 203 59858 172 0 5 26 chain 499815 chr18_GL383570v1_alt 164789 + 114918 121353 L1PA5 6144 + 0 6144 3131 367 0 17 339 3 0 88 0 17 321 0 3 2018 2 0 26 4 0 1247 0 1 140 0 1 713 0 6 80 710 383 377 chain 565211 chr18_GL383570v1_alt 164789 + 131795 137830 L1HS 6032 + 0 6032 89 823 0 4 5198 7 0 7 chain 106969 chr18_GL383570v1_alt 164789 + 150110 151285 L1PA3long 6157 + 4977 6152 17438 1175 chain 17546 chr18_GL383570v1_alt 164789 + 157964 158162 L1PA6 6164 + 5964 6162 59184 198 chain 50451 chr18_GL383571v1_alt 198278 + 33835 34483 PABL_B 668 + 0 668 29397 66 0 4 15 0 13 180 1 0 6 0 1 147 0 3 233 chain 31593 chr18_GL383568v1_alt 104552 + 48462 48811 L1P1 4361 + 3981 4328 40674 170 1 0 154 1 0 23 chain 554077 chr18_GL383568v1_alt 104552 + 52229 58260 L1PA2 6032 + 0 6031 476 257 1 0 478 0 1 6 1 0 3387 0 1 1901 chain 58902 chr18_GL383568v1_alt 104552 + 62575 63326 THE1A-int 1579 + 0 756 26692 114 0 1 54 2 1 5 0 1 474 0 1 4 0 2 6 2 3 90 chain 563689 chr18_GL383568v1_alt 104552 + 65121 71148 L1HS 6032 + 3 6030 119 6027 chain 14274 chr18_GL383568v1_alt 104552 + 78883 79182 THE1B 368 + 2 306 63229 62 49 50 55 2 0 5 1 2 14 19 26 11 4 3 12 2 1 63 chain 3402 chr18_GL383572v1_alt 159547 + 152144 152180 L1P3 4156 + 3461 3497 96041 36 chain 57098 chr18_KI270863v1_alt 167999 + 37859 38617 MER4E 760 + 2 760 27231 15 0 1 53 0 1 37 2 0 53 22 16 84 0 1 62 0 1 38 1 3 103 1 3 287 chain 5739 chr18_KI270863v1_alt 167999 + 145308 145436 Tigger1 2417 + 2209 2337 82186 43 2 0 20 36 38 27 chain 20055 chr19_KI270865v1_alt 52969 + 10650 10945 AluSp 311 + 10 301 56303 45 32 28 59 0 1 125 2 1 32 chain 5517 chr19_GL383573v1_alt 385657 + 0 66 LTR66 600 + 534 600 83168 66 chain 88551 chr19_GL383573v1_alt 385657 + 13917 14984 MER11C 1089 + 0 1072 19933 225 0 5 131 1 0 202 6 5 23 0 1 80 1 0 248 17 18 59 0 1 74 chain 71131 chr19_GL383573v1_alt 385657 + 29292 30173 MER11D 897 + 0 897 23735 481 7 0 110 3 26 280 chain 39433 chr19_GL383573v1_alt 385657 + 50627 51181 L1PA6 6164 + 5606 6162 35053 332 67 69 155 chain 36342 chr19_GL383573v1_alt 385657 + 105273 105735 LTR2 463 + 0 463 37176 360 34 35 68 chain 67496 chr19_GL383573v1_alt 385657 + 122928 124172 LTR70 1284 + 345 1283 24579 252 0 1 51 0 1 213 1 2 63 28 32 73 311 0 75 0 4 45 8 5 31 1 0 43 2 1 39 1 0 7 chain 535397 chr19_GL383573v1_alt 385657 + 144680 150800 L1PA3long 6157 + 0 6157 1602 317 9 12 144 0 4 96 0 4 121 1 8 77 0 2 301 0 3 1233 6 0 70 1 5 859 0 3 833 0 1 261 0 4 202 1 0 200 0 1 120 0 2 417 0 5 518 0 1 333 chain 338206 chr19_GL383573v1_alt 385657 + 163428 167388 L1PA4 6152 + 1493 6143 6103 82 0 689 56 1 0 170 0 1 686 1 0 84 1 3 27 0 1 179 7 8 461 0 1 296 2 1 29 0 1 1022 5 4 737 3 1 111 chain 531360 chr19_GL383573v1_alt 385657 + 167848 173863 L1PA3long 6157 + 4 6155 1778 75 1 0 74 6 7 275 0 1 128 1 5 207 0 128 2365 0 4 111 1 0 1595 0 1 918 1 0 257 chain 530540 chr19_GL383573v1_alt 385657 + 184218 190350 L1PA4 6152 + 0 6140 1805 74 0 3 49 16 2 14 10 24 2321 1 0 268 0 1 759 1 2 839 0 4 934 1 0 83 0 2 138 2 1 622 chain 7192 chr19_GL383573v1_alt 385657 + 195400 195478 LTR10C 591 + 14 92 76967 78 chain 379215 chr19_GL383573v1_alt 385657 + 195489 200866 L1PA6 6164 + 0 6162 5500 90 33 237 42 31 38 85 19 18 144 7 10 279 0 6 8 6 0 50 0 1 1240 30 30 53 1 2 193 0 2 176 3 0 75 0 1 405 2 0 218 0 4 295 0 3 505 1 0 12 628 1195 558 0 1 4 1 0 163 0 1 11 2 0 7 chain 40314 chr19_GL383573v1_alt 385657 + 200866 201373 LTR10C 591 + 80 591 34437 99 0 1 9 0 2 5 1 0 314 0 2 79 chain 7330 chr19_GL383573v1_alt 385657 + 202796 202899 HERVIP10FH-int 2884 + 209 311 76569 78 5 4 20 chain 14716 chr19_GL383573v1_alt 385657 + 202925 203094 L1PA6 6164 + 5802 5971 62651 169 chain 15648 chr19_GL383573v1_alt 385657 + 203101 203285 L1PA6 6164 + 5976 6160 61471 184 chain 30890 chr19_GL383573v1_alt 385657 + 207472 207876 LTR66 600 + 0 401 41227 88 1 0 86 9 7 220 chain 8620 chr19_GL383573v1_alt 385657 + 296812 296905 L1PA2 6032 + 5939 6032 73408 93 chain 435384 chr19_GL383573v1_alt 385657 + 331788 337890 L1PA8 5853 + 49 5853 4658 23 3 1 9 48 26 194 18 6 99 0 1 5 2 1 368 0 11 234 6 0 999 1 0 654 11 0 198 0 1 515 0 1 630 316 0 163 0 2 203 0 299 300 0 70 32 314 0 24 0 1 400 0 3 42 2 1 43 2 0 69 15 18 45 2 1 19 3 2 91 chain 8555 chr19_GL383573v1_alt 385657 + 342557 342674 MER85 139 + 12 139 73551 76 1 11 40 chain 37087 chr19_GL383573v1_alt 385657 + 345657 346116 LTR2 463 + 0 463 36685 377 9 10 28 0 4 22 1 0 22 chain 238239 chr19_GL383573v1_alt 385657 + 347800 352651 Harlequin-int 5206 + 132 3383 8513 13 13 0 149 0 1 81 1 0 107 1 0 199 316 0 164 0 1 24 5 4 559 13 0 286 0 5 812 1651 388 59 0 1 398 chain 36452 chr19_GL383573v1_alt 385657 + 352651 353318 HERVE_a-int 7009 + 6306 6942 36734 83 7 6 38 1 0 32 1 0 12 2 1 13 1 0 5 2 0 9 1 0 35 1 0 8 18 17 31 0 2 5 13 9 27 7 5 55 2 1 9 4 0 26 4 1 53 3 1 26 1 0 31 1 0 6 15 14 24 2 0 34 4 2 15 chain 12524 chr19_GL383573v1_alt 385657 + 354970 355304 L1PB1 5432 + 5114 5413 65939 24 1 0 9 13 11 9 3 1 52 19 17 43 1 0 14 76 52 24 1 0 18 6 5 11 1 0 9 chain 3251 chr19_GL383573v1_alt 385657 + 371175 371219 LTR23 429 + 359 408 97467 25 0 5 19 chain 141716 chr19_GL383575v2_alt 170222 + 42577 44137 L1PA3long 6157 + 4592 6157 12959 714 0 1 797 0 4 49 chain 116459 chr19_GL383575v2_alt 170222 + 68567 69884 SVA_C 1631 + 59 1618 16142 544 0 156 78 0 88 20 2 5 52 3 0 16 1 0 25 1 0 575 chain 174998 chr19_GL383575v2_alt 170222 + 81571 83914 SVA_E 1901 + 5 1901 10834 148 1 0 664 1 0 26 1 0 80 447 0 35 2 1 559 0 5 364 1 0 14 chain 18362 chr19_GL383575v2_alt 170222 + 82492 82871 SVA_E 1901 + 969 1304 40588 5 1 0 41 7 13 67 1 0 44 48 0 165 chain 2665 chr19_GL383575v2_alt 170222 + 82675 82704 SVA_E 1901 + 1107 1136 100495 29 chain 17253 chr19_GL383575v2_alt 170222 + 96711 96964 L1PA10 4194 + 1624 1925 59519 32 6 8 64 4 8 133 0 42 14 chain 97234 chr19_GL383575v2_alt 170222 + 115583 117228 L1PA8A 6298 + 4083 6289 18629 14 0 5 41 0 844 78 0 4 91 3 2 15 16 0 27 2 9 57 0 1 51 1 0 21 0 5 23 1 0 116 1 6 25 0 2 50 0 2 5 306 3 53 0 1 44 0 3 110 0 1 362 12 13 80 1 3 39 chain 133533 chr19_GL383575v2_alt 170222 + 136349 137854 SVA_D 2077 + 6 2077 13688 21 6 0 583 13 11 140 0 40 77 0 535 32 1 0 632 chain 18321 chr19_GL383576v1_alt 188024 + 6094 6837 L1PREC2 3366 + 2626 3240 58335 24 9 10 92 2 0 54 1 0 36 174 141 23 8 6 32 236 149 25 5 0 22 chain 36845 chr19_GL383576v1_alt 188024 + 27053 27512 LTR2 463 + 0 463 36849 129 0 3 201 0 1 129 chain 212130 chr19_GL383576v1_alt 188024 + 29260 31841 Harlequin-int 5206 + 125 2692 9271 169 2 1 63 0 5 120 2 0 199 1 0 162 0 1 55 0 1 30 6 10 12 1 0 9 0 3 3 20 0 375 2 0 782 1 0 567 chain 35961 chr19_GL383576v1_alt 188024 + 31841 32270 LTR2 463 + 14 447 37435 61 0 1 53 0 3 315 chain 317998 chr19_GL383576v1_alt 188024 + 62081 66915 HERVL-int 5654 + 26 4134 6444 226 228 7 42 0 5 131 0 8 172 1 0 4 0 1 25 1 3 93 0 3 432 2 1 150 9 10 554 2 3 176 9 0 8 3 12 285 0 6 316 6 7 205 2 1 4 0 1 318 530 0 456 2 0 256 0 1 186 chain 532012 chr19_GL383576v1_alt 188024 + 69113 75545 HERVK-int 6823 + 0 6567 1750 5 1 0 11 1 0 3 1 0 23 1 0 20 1 0 38 1 0 21 15 12 17 12 0 306 1 0 206 2 0 26 1 0 16 1 0 314 1 0 441 1 0 269 0 10 89 7 2 6 1 0 3286 0 4 368 9 297 58 1 0 36 1 0 124 1 0 49 3 0 5 1 0 7 1 0 3 1 0 74 3 1 7 1 0 24 17 11 11 1 0 20 2 0 3 1 0 8 1 0 5 172 101 9 2 0 12 1 0 14 3 1 11 2 0 30 8 3 7 1 0 3 1 0 10 10 6 10 11 5 7 1 0 8 1 0 5 1 0 26 1 0 4 1 0 12 35 26 17 1 0 4 chain 75273 chr19_GL383576v1_alt 188024 + 76346 77309 LTR5_Hs 974 + 0 969 22777 285 0 1 181 0 1 188 1 0 163 47 52 98 chain 507228 chr19_GL383576v1_alt 188024 + 147220 153350 L1PA5 6144 + 0 6128 2880 120 0 14 462 17 18 540 0 3 15 18 9 61 5 6 606 0 1 239 0 3 217 1 0 1524 0 1 84 1 0 218 0 6 151 4 0 330 3 0 184 0 1 603 3 4 256 15 0 355 1 0 97 chain 21064 chr19_KI270867v1_alt 233762 + 15114 15354 L1PA5 6144 + 5898 6138 55041 240 chain 16478 chr19_KI270867v1_alt 233762 + 17818 18093 THE1B 368 + 0 285 60321 15 2 0 32 0 1 29 21 39 61 23 16 92 chain 31480 chr19_KI270867v1_alt 233762 + 18093 18487 THE1B-int 1605 + 1192 1587 40748 325 1 2 68 chain 6553 chr19_KI270867v1_alt 233762 + 25264 25339 THE1B 368 + 293 368 79149 75 chain 267632 chr19_KI270867v1_alt 233762 + 44923 48208 L1PA7 6471 + 2081 6470 7773 451 12 21 78 12 0 63 3 1 48 0 1 1743 0 1 86 1 0 5 0 1 532 0 4 26 11 1117 48 0 7 9 8 0 18 0 1 117 3 0 11 chain 121050 chr19_KI270867v1_alt 233762 + 98520 100130 THE1B-int 1605 + 0 1605 15341 12 5 6 100 7 12 236 6 5 59 38 21 233 5 6 512 4 7 217 1 0 67 0 1 49 0 1 51 0 2 8 chain 38683 chr19_KI270867v1_alt 233762 + 147637 148235 LTR76 689 + 7 637 35576 7 0 8 23 5 4 80 15 35 197 21 27 6 1 0 155 2 1 35 21 22 30 chain 37581 chr19_KI270867v1_alt 233762 + 173587 174092 LTR2B 499 + 0 499 36349 13 3 0 7 4 3 415 1 0 6 1 0 55 chain 38807 chr19_KI270867v1_alt 233762 + 226414 226912 LTR2B 499 + 5 499 35497 9 3 0 8 0 1 418 1 0 3 1 0 55 chain 9477 chr19_GL949746v1_alt 987716 + 1213 1389 MER5A 189 + 11 168 71534 89 4 0 12 43 28 28 chain 82486 chr19_GL949746v1_alt 987716 + 11133 12088 LTR13A 966 + 0 953 21135 76 0 4 582 6 0 291 chain 8842 chr19_GL949746v1_alt 987716 + 126281 126379 BC200 147 + 5 103 72886 98 chain 15875 chr19_GL949746v1_alt 987716 + 282231 282586 L1PB1 5432 + 5107 5427 61189 8 5 0 21 10 8 14 4 0 10 2 0 51 1 0 12 6 5 44 1 0 16 1 0 4 2 0 11 8 0 13 27 22 24 1 0 20 6 5 9 1 0 5 0 2 11 2 0 5 chain 4312 chr19_GL949746v1_alt 987716 + 296548 296594 L1PREC2 3366 + 1122 1168 89433 46 chain 26297 chr19_GL949746v1_alt 987716 + 451187 452261 LTR7B 505 + 0 497 47274 105 0 10 46 0 2 8 22 37 22 3 0 7 662 21 53 9 50 80 14 13 43 chain 2929 chr19_GL949746v1_alt 987716 + 451430 451461 LTR7B 505 + 258 289 100589 31 chain 4321 chr19_GL949746v1_alt 987716 + 451537 451597 LTR7B 505 + 208 289 89348 26 2 23 32 chain 2040 chr19_GL949746v1_alt 987716 + 452014 452042 LTR7B 505 + 208 234 106107 19 2 0 7 chain 20472 chr19_GL949746v1_alt 987716 + 488025 488243 L1HS 6032 + 4337 4555 55810 218 chain 33568 chr19_GL949746v1_alt 987716 + 519574 519938 L1PA2 6032 + 5658 6022 39032 364 chain 6385 chr19_GL949746v1_alt 987716 + 522705 522796 MER4E 760 + 646 752 79726 32 1 15 21 0 1 37 chain 37456 chr19_GL949746v1_alt 987716 + 586373 587390 PRIMA4_LTR 623 + 0 605 36435 38 12 12 125 0 23 48 397 12 59 1 0 31 1 0 20 16 18 41 51 0 119 5 7 37 2 1 14 chain 15363 chr19_GL949746v1_alt 987716 + 596985 597186 L1PA7 6471 + 6267 6464 61836 17 0 1 30 6 1 148 chain 67500 chr19_GL949746v1_alt 987716 + 847133 848062 LTR5_Hs 974 + 0 974 24577 168 11 20 271 0 4 12 0 5 146 10 9 23 1 2 9 8 10 13 0 2 82 7 7 34 5 6 9 0 22 120 chain 24493 chr19_GL949746v1_alt 987716 + 856150 857643 MER41A 554 + 0 387 50040 14 0 1 80 249 0 25 1 4 46 891 29 158 3 4 26 chain 19494 chr19_GL949746v1_alt 987716 + 880595 880834 AluSp 311 + 58 297 57037 239 chain 20976 chr19_GL949746v1_alt 987716 + 882001 882261 AluSc 308 + 28 297 55163 32 0 8 40 2 3 186 chain 16137 chr19_GL949746v1_alt 987716 + 920191 920456 AluSc 308 + 20 298 60841 44 2 0 114 1 33 26 33 23 24 7 0 14 chain 55656 chr19_GL949746v1_alt 987716 + 925823 926471 L1PA10 4194 + 3502 4150 27682 584 0 3 27 3 0 34 chain 3384 chr19_GL949746v1_alt 987716 + 939488 939541 L1PB3 3668 + 3511 3562 96246 17 3 1 33 chain 83380 chr19_GL949746v1_alt 987716 + 963087 964087 LTR5A 1029 + 0 1029 20947 13 0 4 116 1 14 621 15 21 156 0 6 78 chain 116845 chr20_GL383577v2_alt 128386 + 7459 8780 SVA_C 1631 + 16 1629 16078 4 0 1 492 0 1 69 0 76 80 0 40 70 1 180 378 1 0 207 4 0 15 chain 3757 chr20_GL383577v2_alt 128386 + 26406 26452 MLT1K 546 + 498 544 93157 46 chain 567526 chr20_GL383577v2_alt 128386 + 109153 115183 L1HS 6032 + 2 6032 28 6030 chain 136629 chr20_GL383577v2_alt 128386 + 126407 128324 L1MA3 4352 + 2348 4244 13372 18 0 4 142 5 0 65 3 5 166 0 1 396 3 0 80 1 6 165 6 7 323 11 9 5 0 2 15 1 0 7 0 1 328 34 13 7 3 0 41 46 48 33 4 0 9 chain 6787 chr20_KI270869v1_alt 118774 + 70714 70832 MER51E 476 + 364 476 78363 21 30 0 21 0 24 46 chain 30185 chr20_KI270869v1_alt 118774 + 106169 106483 AluYb9 318 + 1 315 41864 314 chain 5012 chr20_KI270871v1_alt 58661 + 22361 22449 Tigger1 2417 + 2296 2387 85603 60 16 19 12 chain 49933 chr20_KI270870v1_alt 183433 + 162195 162855 PABL_A 660 + 0 660 29588 127 1 0 79 2 1 71 24 25 102 0 1 254 chain 414777 chr21_KI270874v1_alt 166743 + 6048 11011 L1PA6 6164 + 1199 6160 4965 44 0 1 190 0 5 273 0 1 244 0 1 367 0 1 136 1 0 125 0 1 147 12 7 166 0 1 289 0 1 318 9 5 349 21 22 378 0 1 371 2 0 554 1 0 171 1 0 80 0 1 383 1 0 280 0 1 39 3 0 8 chain 489498 chr21_KI270874v1_alt 166743 + 16658 22136 L1PA3long 6157 + 5 6157 3430 89 0 526 161 0 128 520 0 1 845 0 1 823 1 0 89 0 1 77 0 4 429 0 10 584 0 2 1700 0 1 156 0 1 4 chain 11993 chr21_KI270874v1_alt 166743 + 26376 26514 L1HS 6032 + 1796 1934 66845 138 chain 29385 chr21_KI270874v1_alt 166743 + 46400 47331 LTR19A 502 + 0 500 42756 64 0 1 126 20 55 62 14 16 8 0 1 10 2 0 6 0 2 89 471 0 20 6 7 33 chain 114644 chr21_KI270874v1_alt 166743 + 56870 58214 L1PA7 6471 + 5079 6423 16443 490 0 1 51 1 0 802 chain 25970 chr21_KI270874v1_alt 166743 + 87968 88284 L1PA6 6164 + 4610 4926 47761 97 0 1 75 1 0 143 chain 30709 chr21_KI270874v1_alt 166743 + 88289 88659 L1PA6 6164 + 4934 5308 41381 338 0 4 32 chain 57706 chr21_KI270874v1_alt 166743 + 88661 89337 L1PA6 6164 + 5308 5988 27048 625 0 4 51 chain 511000 chr21_KI270874v1_alt 166743 + 96486 102953 L1PA7 6471 + 0 6470 2717 410 0 2 201 1 2 542 27 0 50 3 7 25 0 13 103 0 1 27 0 3 128 25 4 44 2 0 146 2 0 10 3 10 259 0 1 395 2 1 35 1 4 173 7 8 35 0 2 30 0 2 32 0 22 369 0 4 326 1 2 160 1 0 93 16 23 132 3 0 96 10 13 1004 2 0 69 1 0 386 0 1 211 0 3 83 2 1 147 14 0 285 2 1 325 2 0 9 chain 455997 chr21_KI270874v1_alt 166743 + 127616 133073 L1PA4 6152 + 1 5353 4236 1315 6 22 260 4 5 244 0 5 52 131 0 67 3 0 348 1 2 12 1 0 7 0 2 360 11 9 459 0 1 994 0 2 1137 1 5 44 chain 243719 chr21_KI270874v1_alt 166743 + 139440 142766 L1PA10 4194 + 805 4161 8387 195 0 1 7 5 7 137 0 2 8 22 8 57 8 20 71 7 11 65 3 0 5 10 19 595 1 14 195 0 4 218 0 1 4 1 0 69 0 11 13 11 7 78 1 0 36 10 12 37 0 2 49 1 2 312 4 5 362 0 2 166 1 2 151 1 2 210 0 1 94 13 0 43 4 1 34 1 0 11 chain 436719 chr21_KI270874v1_alt 166743 + 153698 159357 HERV9-int 5642 + 11 5622 4630 563 37 0 123 21 0 19 6 0 130 2 0 17 0 85 86 3 0 7 0 3 41 41 44 11 10 5 431 1 2 133 0 1 295 13 20 882 2 8 445 0 3 341 0 1 153 0 1 265 0 1 513 63 1 317 5 6 116 8 7 5 0 1 47 16 17 69 2 0 93 0 3 73 0 2 60 6 4 38 2 0 22 7 6 58 1 0 13 28 5 19 chain 24178 chr21_KI270874v1_alt 166743 + 162779 163161 LTR12F 595 + 0 595 50525 84 48 0 16 5 124 78 7 149 144 chain 161934 chr21_KI270874v1_alt 166743 + 164613 166743 L1P3 4156 + 0 2096 11617 253 13 12 57 1 0 75 43 27 156 6 7 238 1 0 100 5 0 6 0 5 391 12 13 129 18 0 200 8 9 418 chain 47621 chr21_KI270873v1_alt 143900 + 48998 49601 L1PA7 6471 + 5851 6468 30429 15 0 10 300 13 16 12 0 1 108 10 10 145 chain 49421 chr21_KI270873v1_alt 143900 + 71511 72454 PABL_A 660 + 0 635 29795 60 16 30 165 0 1 138 0 1 34 324 0 206 chain 30042 chr21_KI270873v1_alt 143900 + 74472 74894 MER1A 529 + 64 529 42008 16 15 55 157 1 0 102 1 2 60 7 10 63 chain 8349 chr21_KI270873v1_alt 143900 + 104296 104405 MER85 139 + 24 139 74027 66 3 9 40 chain 27050 chr21_GL383579v2_alt 201197 + 11283 11642 L1PA8A 6298 + 5924 6290 46199 8 0 3 210 1 3 17 0 2 15 1 2 18 1 0 88 chain 45457 chr21_GL383579v2_alt 201197 + 78626 79137 L1PA3long 6157 + 5646 6157 31336 511 chain 30541 chr21_GL383579v2_alt 201197 + 80360 80787 L1PA8 5853 + 5453 5853 41531 69 0 1 41 1 0 19 21 0 25 2 0 70 2 1 9 2 0 6 0 1 45 2 1 22 1 0 90 chain 23888 chr21_GL383579v2_alt 201197 + 88081 88348 AluY 311 + 36 303 50962 267 chain 34131 chr21_GL383579v2_alt 201197 + 95050 95473 LTR2 463 + 0 417 38612 239 6 0 141 0 1 30 1 0 6 chain 8519 chr21_GL383579v2_alt 201197 + 102747 102852 U4 144 + 29 134 73640 105 chain 29350 chr21_GL383579v2_alt 201197 + 135594 135957 THE1C-int 1605 + 18 440 42807 98 0 54 75 0 1 147 1 5 42 chain 28817 chr21_GL383579v2_alt 201197 + 171709 172063 THE1A 353 + 0 353 43600 109 2 1 243 chain 116778 chr21_GL383579v2_alt 201197 + 176837 178254 L1PA6 6164 + 4740 6161 16087 26 13 10 5 0 3 527 1 5 510 1 0 166 21 22 147 chain 29750 chr21_GL383580v2_alt 74653 + 45514 46009 MER1A 529 + 0 495 42305 41 39 55 98 29 9 199 1 5 21 0 1 22 21 20 24 chain 23660 chr21_GL383580v2_alt 74653 + 47631 48012 MSTA 426 + 7 417 51337 110 0 15 20 0 4 49 56 63 43 4 7 99 chain 92793 chr21_GL383580v2_alt 74653 + 54089 55176 L1PA6 6164 + 5067 6159 19216 16 2 5 80 0 1 72 0 1 917 chain 4595 chr21_GL383581v2_alt 116689 + 72476 72527 HSMAR2 1300 + 705 756 87821 51 chain 6259 chr21_GL383581v2_alt 116689 + 112003 112147 L1MA3 4352 + 4208 4320 80128 52 2 0 22 12 10 16 28 0 12 chain 22333 chr21_KI270872v1_alt 82692 + 25879 26201 L1M1 2793 + 2374 2695 53356 41 1 3 16 4 0 144 5 9 42 1 0 44 1 0 12 1 0 10 chain 190322 chr21_KI270872v1_alt 82692 + 35729 38281 L1PA13 3608 + 914 3488 10099 131 10 12 241 0 2 227 14 15 483 0 4 5 2 1 216 0 1 315 0 4 193 14 35 5 1 0 178 9 12 106 12 9 23 1 0 28 1 0 63 0 4 46 2 1 5 1 0 24 1 0 33 9 8 18 8 7 22 1 0 5 2 0 48 2 0 4 2 0 19 1 0 21 chain 20475 chr22_KI270875v1_alt 259914 + 53053 53316 L1PBa1 4058 + 1133 1401 55805 54 0 1 92 0 2 57 10 12 50 chain 111357 chr22_KI270875v1_alt 259914 + 76996 78247 SVA_C 1631 + 235 1608 16895 562 0 82 32 1 0 44 1 0 9 1 0 38 0 40 191 0 3 372 chain 57091 chr22_KI270875v1_alt 259914 + 79502 80183 L1PA7 6471 + 5774 6457 27236 531 13 15 137 chain 39797 chr22_KI270875v1_alt 259914 + 88362 88910 LTR10B1 532 + 8 532 34827 165 12 3 14 13 0 41 5 3 298 chain 89300 chr22_KI270875v1_alt 259914 + 102323 103755 L1PB1 5432 + 3937 5246 19801 266 16 16 271 140 8 12 0 1 33 0 1 5 1 0 31 3 1 39 2 0 9 1 5 141 2 1 20 6 14 203 0 2 83 17 20 14 1 0 14 1 0 9 7 3 8 2 0 11 0 2 28 1 0 5 5 9 13 2 1 10 chain 84439 chr22_KI270875v1_alt 259914 + 104087 105136 MER11B 1079 + 0 1079 20726 316 10 27 48 0 1 374 5 7 103 0 1 107 1 11 51 5 4 29 chain 8794 chr22_KI270875v1_alt 259914 + 115534 115648 MER44D 709 + 0 115 73000 11 1 2 102 chain 5938 chr22_KI270878v1_alt 186262 + 13013 13083 MER5A 189 + 6 76 81324 70 chain 50714 chr22_KI270878v1_alt 186262 + 13150 13770 LTR6A 649 + 0 624 29308 406 0 5 21 1 0 192 chain 19910 chr22_KI270878v1_alt 186262 + 24223 24499 LTR61 567 + 268 567 56508 72 0 17 36 5 8 11 6 10 20 1 0 125 chain 28990 chr22_KI270878v1_alt 186262 + 113451 113828 L1PB 1623 + 649 1024 43340 138 1 0 68 4 3 166 chain 23346 chr22_KI270878v1_alt 186262 + 141402 141673 L1PA3long 6157 + 5887 6157 51855 26 2 1 243 chain 89546 chr22_KI270878v1_alt 186262 + 156423 157453 LTR5A 1029 + 0 1029 19753 150 2 1 878 chain 85969 chr22_KI270878v1_alt 186262 + 178846 179870 LTR5A 1029 + 0 1029 20447 150 1 0 189 0 2 502 0 4 182 chain 4611 chr22_KI270878v1_alt 186262 + 179907 180011 MIR 256 + 101 224 87741 39 1 2 14 29 47 21 chain 3461 chr22_KI270879v1_alt 304135 + 51987 52029 L1MD2 1676 + 1237 1279 95536 42 chain 5211 chr22_KI270879v1_alt 304135 + 77102 77234 L1MB3 1562 + 1330 1500 84624 21 1 0 22 49 88 39 chain 174709 chr22_KI270879v1_alt 304135 + 90204 92658 SVA_E 1901 + 0 1892 10857 153 2 0 664 1 0 19 1 0 91 4 0 38 48 0 62 500 0 726 6 0 139 chain 5813 chr22_KI270879v1_alt 304135 + 91290 91356 SVA_E 1901 + 1156 1222 64347 66 chain 19045 chr22_KI270879v1_alt 304135 + 91356 91714 SVA_E 1901 + 1095 1382 57501 83 0 1 4 16 7 10 83 20 8 0 1 136 4 3 14 chain 1040 chr22_KI270879v1_alt 304135 + 91469 91508 SVA_E 1901 + 935 974 63852 39 chain 3599 chr22_KI270879v1_alt 304135 + 91508 91552 SVA_E 1901 + 1227 1270 80592 34 1 0 9 chain 3476 chr22_KI270879v1_alt 304135 + 91748 91787 SVA_E 1901 + 817 855 70628 26 1 0 12 chain 44540 chr22_KI270879v1_alt 304135 + 136569 137077 MER9a2 513 + 0 513 31809 327 0 5 181 chain 80062 chr22_KI270879v1_alt 304135 + 143445 144411 LTR5_Hs 974 + 0 974 21613 285 0 1 281 0 1 91 0 1 159 8 15 31 8 6 103 chain 31713 chr22_KI270879v1_alt 304135 + 147884 148271 MER48 407 + 0 407 40568 137 3 23 247 chain 40475 chr22_KI270879v1_alt 304135 + 161340 161863 LTR10G 522 + 0 522 34328 116 1 0 227 11 10 95 0 2 58 1 0 14 chain 75628 chr22_KI270879v1_alt 304135 + 166278 167222 LTR13 1007 + 7 956 22680 66 2 0 48 0 2 140 0 2 116 4 5 274 0 1 21 17 17 116 0 1 140 chain 133366 chr22_KI270879v1_alt 304135 + 172793 174271 SVA_D 2077 + 13 2074 13703 12 0 12 801 0 575 648 4 0 13 chain 3795 chr22_KI270879v1_alt 304135 + 181756 181799 L1MB7 1623 + 22 65 92881 43 chain 77411 chr22_KI270879v1_alt 304135 + 191916 192965 MER11C 1089 + 0 1063 22218 247 4 13 57 5 9 60 1 0 146 36 35 11 1 0 112 1 5 4 1 0 38 0 1 127 0 1 54 1 0 143 chain 22473 chr22_KI270879v1_alt 304135 + 265530 265817 AluSp 311 + 17 295 53156 271 9 0 7 chain 11264 chr22_KI270879v1_alt 304135 + 301316 301505 MER30 238 + 46 236 68143 60 39 37 47 0 3 43 chain 5469 chr22_KI270877v1_alt 101331 + 14951 15153 Tigger4a 237 + 17 237 83365 26 0 119 15 109 1 12 0 7 40 chain 6816 chr22_GL383583v2_alt 96924 + 3108 3187 L1MA9 1812 + 564 643 78256 79 chain 92029 chr22_GL383582v2_alt 162811 + 17511 18579 MER11C 1089 + 0 1073 19339 220 0 5 194 1 0 146 0 1 7 1 0 321 4 5 174 chain 29291 chr22_GL383582v2_alt 162811 + 35860 36176 AluYb8 318 + 0 314 42909 132 2 0 182 chain 18282 chr22_GL383582v2_alt 162811 + 49059 49379 LTR12C 1709 + 650 919 58383 86 72 22 79 1 0 82 chain 32601 chr22_GL383582v2_alt 162811 + 57011 57567 L1M1 2793 + 2067 2573 39861 62 7 12 56 45 0 88 1 0 4 22 14 137 26 25 108 chain 3618 chr22_GL383582v2_alt 162811 + 131649 131691 LTR33 499 + 457 499 94288 42 chain 28387 chrX_KI270880v1_alt 284869 + 66911 67219 AluY 311 + 3 311 44290 308 chain 7568 chrX_KI270880v1_alt 284869 + 92715 92868 THE1B 368 + 153 307 75938 16 31 30 15 0 4 14 1 0 6 7 6 63 chain 54327 chrX_KI270880v1_alt 284869 + 117719 118345 L1PA3long 6157 + 5487 6142 28111 424 0 5 131 0 24 71 chain 21532 chrX_KI270880v1_alt 284869 + 137921 138574 L1PA7 6471 + 6041 6349 54468 24 345 0 284 chain 50083 chrX_KI270880v1_alt 284869 + 194410 195007 L1PA7 6471 + 5871 6470 29530 147 0 1 302 5 6 143 chain 65736 chrX_KI270880v1_alt 284869 + 203637 204433 L1PA7 6471 + 5593 6391 25024 21 0 2 14 0 1 71 0 1 7 2 0 73 2 3 534 1 0 71 chain 506304 chrX_KI270881v1_alt 144206 + 30391 36524 L1PA6 6164 + 0 6156 2920 13 5 6 352 0 8 8 17 16 97 11 10 176 1 2 292 5 4 462 2 0 109 17 19 43 0 7 130 1 2 576 1 2 592 0 1 778 0 2 851 0 1 119 0 1 712 0 2 763 chain 48657 chrX_KI270881v1_alt 144206 + 39515 40072 L1PA4 6152 + 5582 6143 30066 41 0 1 155 0 1 228 0 1 13 0 1 120 chain 13074 chrX_KI270881v1_alt 144206 + 66852 67119 MER1B 344 + 124 339 64977 8 52 0 66 11 10 58 17 18 55 chain 95763 chrX_KI270881v1_alt 144206 + 95866 96931 L1PA3long 6157 + 5086 6152 18801 483 5 6 577 chain 228761 chrX_KI270881v1_alt 144206 + 117611 123932 L1PA3long 6157 + 2690 5886 8782 355 3125 0 1297 2 0 1044 0 2 498 chain 8608 chr19_KI270882v1_alt 248807 + 6475 6571 U6 107 + 9 105 73438 96 chain 212131 chr19_KI270882v1_alt 248807 + 10313 12648 L1PA3long 6157 + 3816 6151 9270 2335 chain 19975 chr19_KI270882v1_alt 248807 + 17673 17944 AluSp 311 + 9 284 56436 68 0 6 45 1 0 132 10 9 15 chain 4415 chr19_KI270882v1_alt 248807 + 48295 48437 MLT1D 503 + 253 396 88809 23 1 0 17 4 5 15 1 0 6 51 53 24 chain 212432 chr19_KI270883v1_alt 170399 + 3599 5933 L1PA3long 6157 + 3823 6157 9260 2334 chain 19975 chr19_KI270883v1_alt 170399 + 10955 11226 AluSp 311 + 9 284 56435 68 0 6 45 1 0 132 10 9 15 chain 8608 chr19_KI270884v1_alt 157053 + 203 299 U6 107 + 9 105 73437 96 chain 211964 chr19_KI270884v1_alt 157053 + 4048 6381 L1PA3long 6157 + 3823 6157 9286 1167 0 1 1166 chain 19975 chr19_KI270884v1_alt 157053 + 11402 11673 AluSp 311 + 9 284 56434 68 0 6 45 1 0 132 10 9 15 chain 8699 chr19_KI270885v1_alt 171027 + 329 426 U6 107 + 9 106 73213 97 chain 212554 chr19_KI270885v1_alt 171027 + 4174 6508 L1PA3long 6157 + 3823 6157 9253 2334 chain 19975 chr19_KI270885v1_alt 171027 + 11527 11798 AluSp 311 + 9 284 56433 68 0 6 45 1 0 132 10 9 15 chain 19975 chr19_KI270886v1_alt 204239 + 1033 1304 AluSp 311 + 9 284 56432 68 0 6 45 1 0 132 10 9 15 chain 8608 chr19_KI270887v1_alt 209512 + 12150 12246 U6 107 + 9 105 73436 96 chain 212131 chr19_KI270887v1_alt 209512 + 15988 18323 L1PA3long 6157 + 3816 6151 9269 2335 chain 19975 chr19_KI270887v1_alt 209512 + 23348 23619 AluSp 311 + 9 284 56431 68 0 6 45 1 0 132 10 9 15 chain 212554 chr19_KI270888v1_alt 155532 + 3738 6072 L1PA3long 6157 + 3823 6157 9252 2334 chain 19975 chr19_KI270888v1_alt 155532 + 11092 11363 AluSp 311 + 9 284 56430 68 0 6 45 1 0 132 10 9 15 chain 8608 chr19_KI270889v1_alt 170698 + 20 116 U6 107 + 9 105 73435 96 chain 212554 chr19_KI270889v1_alt 170698 + 3865 6199 L1PA3long 6157 + 3823 6157 9251 2334 chain 19975 chr19_KI270889v1_alt 170698 + 11218 11489 AluSp 311 + 9 284 56429 68 0 6 45 1 0 132 10 9 15 chain 8608 chr19_KI270890v1_alt 184499 + 9 105 U6 107 + 9 105 73434 96 chain 212087 chr19_KI270890v1_alt 184499 + 3854 6188 L1PA3long 6157 + 3823 6157 9274 2334 chain 19853 chr19_KI270890v1_alt 184499 + 11207 11478 AluSp 311 + 9 284 56607 68 0 6 45 1 0 132 10 9 15 chain 8608 chr19_KI270891v1_alt 170680 + 20 116 U6 107 + 9 105 73433 96 chain 212432 chr19_KI270891v1_alt 170680 + 3865 6199 L1PA3long 6157 + 3823 6157 9259 2334 chain 19975 chr19_KI270891v1_alt 170680 + 11219 11490 AluSp 311 + 9 284 56428 68 0 6 45 1 0 132 10 9 15 chain 96027 chr1_KI270892v1_alt 162212 + 44405 45565 L1PA7 6471 + 5163 6322 18773 458 1 0 510 2 0 6 0 2 183 chain 5448 chr1_KI270892v1_alt 162212 + 73954 74018 MER51C 639 + 0 64 83469 64 chain 12747 chr1_KI270892v1_alt 162212 + 115236 115499 L1PB1 5432 + 5179 5422 65529 41 2 1 16 1 0 44 1 0 15 1 0 4 2 0 8 8 0 18 9 6 14 2 0 26 8 9 11 2 1 11 1 0 18 chain 38002 chr2_KI270894v1_alt 214158 + 17185 17730 LTR7B 505 + 0 490 36071 198 76 0 18 15 36 238 chain 60097 chr2_KI270894v1_alt 214158 + 19851 20834 HERVH-int 3825 + 2778 3825 26346 197 166 0 40 1 0 105 4 1 122 39 44 11 1 0 88 0 3 28 0 227 181 chain 36835 chr2_KI270894v1_alt 214158 + 22517 23056 LTR7B 505 + 0 491 36857 178 0 1 21 76 5 22 2 0 5 2 25 67 0 1 166 chain 19873 chr2_KI270894v1_alt 214158 + 152116 152427 THE1B 368 + 6 341 56576 38 0 15 110 1 0 29 42 52 91 chain 18778 chr2_KI270893v1_alt 161218 + 10971 11272 THE1B 368 + 0 306 57809 68 1 2 43 0 1 42 1 0 13 10 9 20 0 3 8 1 5 10 8 7 11 2 1 63 chain 15373 chr2_KI270893v1_alt 161218 + 16863 17082 MER30 238 + 0 236 61824 103 10 0 7 7 36 40 2 0 50 chain 6119 chr2_KI270893v1_alt 161218 + 29959 30394 MSTA 426 + 0 405 80659 16 50 51 27 258 226 45 17 18 22 chain 85862 chr3_KI270895v1_alt 162896 + 65606 66601 LTR5A 1029 + 3 1029 20477 56 0 2 37 0 2 27 0 14 9 7 20 859 chain 4035 chr3_KI270895v1_alt 162896 + 77337 77381 MER50 708 + 526 570 91198 44 chain 79186 chr3_KI270895v1_alt 162896 + 96022 97273 L1PA7 6471 + 5508 6461 21807 108 1 5 50 0 5 24 1 4 306 310 0 451 chain 27423 chr4_KI270896v1_alt 378547 + 37039 37332 AluYb8 318 + 0 291 45675 132 2 0 159 chain 38748 chr4_KI270896v1_alt 378547 + 52166 52629 LTR2 463 + 0 463 35528 463 chain 80639 chr4_KI270896v1_alt 378547 + 131683 132556 L1PA4 6152 + 5006 5880 21505 811 0 1 62 chain 122502 chr4_KI270896v1_alt 378547 + 215008 216366 L1PA4 6152 + 4521 5880 15113 344 0 1 1014 chain 5243 chr4_KI270896v1_alt 378547 + 227378 227518 Ricksha_c 1012 + 91 216 84486 39 33 29 9 1 0 7 5 0 27 7 2 12 chain 320532 chr4_KI270896v1_alt 378547 + 263824 267634 HERVH-int 3825 + 0 3825 6395 333 1 0 199 5 0 37 13 11 9 4 0 14 7 1 14 1 38 44 1 0 56 0 1 6 0 2 14 0 1 53 0 3 72 11 4 618 1 0 292 1 4 5 3 0 58 9 5 973 0 1 759 1 2 196 chain 444295 chr4_KI270896v1_alt 378547 + 301301 306410 L1PA4 6152 + 21 5183 4486 454 6 10 388 0 2 75 0 4 17 0 1 5 1 0 85 0 2 77 0 2 29 0 4 239 1 6 278 0 5 140 0 4 66 1 4 282 0 2 110 0 3 71 0 4 696 0 4 70 0 2 88 0 3 1930 chain 40161 chr4_KI270896v1_alt 378547 + 308861 309300 SVA_D 2077 + 1636 2075 34548 439 chain 80328 chr4_KI270896v1_alt 378547 + 329100 330002 L1PA4 6152 + 3504 4407 21567 732 0 1 170 chain 45355 chr4_KI270896v1_alt 378547 + 344959 345722 L1PB1 5432 + 4661 5404 31390 13 0 3 117 0 8 181 2 1 13 1 0 106 13 11 24 1 0 9 1 0 7 9 5 9 2 0 52 2 1 16 2 1 42 1 0 16 24 12 18 3 1 4 1 0 11 6 4 24 1 0 6 6 9 8 1 0 11 chain 24818 chr5_KI270897v1_alt 1144418 + 18665 19098 L1PA15 4387 + 3898 4326 49560 35 1 0 167 6 5 15 41 40 25 1 0 22 4 0 10 1 0 50 10 16 31 3 1 11 chain 201925 chr5_KI270897v1_alt 1144418 + 64740 67127 L1PA6 6164 + 3754 6162 9641 898 0 5 16 1 0 255 0 9 44 0 1 337 1 5 697 1 2 128 0 2 9 chain 66014 chr5_KI270897v1_alt 1144418 + 75299 76030 L1PA3long 6157 + 5426 6157 24953 731 chain 37805 chr5_KI270897v1_alt 1144418 + 87240 87661 L1PA3long 6157 + 5725 6145 36201 415 1 0 5 chain 54876 chr5_KI270897v1_alt 1144418 + 308694 309302 L1PA3long 6157 + 5551 6157 27916 601 2 0 5 chain 13958 chr5_KI270897v1_alt 1144418 + 313430 313611 MSTA 426 + 230 416 63653 135 1 6 45 chain 10806 chr5_KI270897v1_alt 1144418 + 313621 313757 MSTA-int 1630 + 0 136 68845 136 chain 4496 chr5_KI270897v1_alt 1144418 + 318183 318237 LTR41 747 + 679 733 88348 54 chain 55258 chr5_KI270897v1_alt 1144418 + 507206 507814 L1PA3long 6157 + 5551 6157 27791 601 2 0 5 chain 13958 chr5_KI270897v1_alt 1144418 + 511941 512122 MSTA 426 + 230 416 63652 135 1 6 45 chain 10806 chr5_KI270897v1_alt 1144418 + 512132 512268 MSTA-int 1630 + 0 136 68844 136 chain 4496 chr5_KI270897v1_alt 1144418 + 516695 516749 LTR41 747 + 679 733 88347 54 chain 13958 chr5_KI270897v1_alt 1144418 + 622004 622185 MSTA 426 + 230 416 63651 135 1 6 45 chain 4496 chr5_KI270897v1_alt 1144418 + 626755 626809 LTR41 747 + 679 733 88346 54 chain 26481 chr5_KI270897v1_alt 1144418 + 723581 723881 L1PA3long 6157 + 5857 6157 47008 300 chain 106344 chr5_KI270897v1_alt 1144418 + 781919 783078 L1PA3long 6157 + 4567 5726 17514 1159 chain 118702 chr5_KI270897v1_alt 1144418 + 793879 795190 L1PA3long 6157 + 4097 5408 15770 1311 chain 113685 chr5_KI270897v1_alt 1144418 + 841416 842939 L1PA8A 6298 + 4780 6289 16590 144 14 18 77 0 1 57 0 1 21 5 7 163 3 0 58 0 1 39 20 1 121 2 1 81 1 2 289 23 23 121 1 0 283 chain 28359 chr5_KI270897v1_alt 1144418 + 845976 846573 L1PB1 5432 + 4922 5404 44331 32 1 4 115 4 0 6 8 16 8 71 0 13 21 0 22 1 0 8 1 0 12 5 1 8 2 0 53 3 2 14 1 0 45 1 0 15 24 12 19 7 4 15 2 0 24 1 0 21 1 0 13 chain 25143 chr5_KI270897v1_alt 1144418 + 862886 863180 L1PA5 6144 + 5844 6138 49045 294 chain 43725 chr5_KI270897v1_alt 1144418 + 929035 929597 MER41A 554 + 0 554 32301 92 0 1 244 10 1 216 chain 30493 chr5_KI270897v1_alt 1144418 + 1101900 1102291 LTR3A 482 + 26 420 41579 96 0 1 37 0 1 193 0 1 34 0 1 8 6 5 17 chain 10586 chr5_KI270897v1_alt 1144418 + 1102409 1102887 HERVK3-int 3053 + 39 436 69254 20 99 72 5 1 0 13 14 0 45 132 102 17 2 1 47 29 26 18 5 0 31 chain 33515 chr5_KI270897v1_alt 1144418 + 1107924 1108376 LTR3A 482 + 26 482 39077 95 0 2 37 0 1 193 0 1 34 0 1 8 6 5 17 19 18 4 0 1 39 chain 59938 chr5_KI270898v1_alt 130957 + 56296 57033 L1PA8 5853 + 5121 5853 26391 400 0 3 38 1 0 20 1 0 27 2 0 73 1 0 5 2 1 52 2 1 19 1 0 93 chain 38486 chr5_KI270898v1_alt 130957 + 75772 76335 LTR19B 566 + 0 566 35721 106 3 0 26 0 4 31 7 0 120 0 1 13 7 0 135 35 34 21 0 9 11 1 4 32 0 4 15 chain 100693 chr6_GL000251v2_alt 4795265 + 1538 2915 LTR12C 1709 + 0 1700 18215 278 5 14 46 0 43 82 5 6 181 0 278 184 1 0 4 4 2 106 11 4 32 0 2 257 25 3 107 10 32 39 chain 3656 chr6_GL000251v2_alt 4795265 + 27470 27508 tRNA-Ile-ATA 38 + 0 38 93950 38 chain 70615 chr6_GL000251v2_alt 4795265 + 36875 38065 L1PB1 5432 + 4300 5422 23840 163 47 13 148 9 6 72 4 7 395 19 10 24 1 0 6 1 0 12 2 0 3 2 0 10 2 0 51 18 16 13 7 10 20 2 1 16 68 54 20 1 0 23 1 0 11 1 0 18 chain 5562 chr6_GL000251v2_alt 4795265 + 79252 79322 tRNA-Gln-CAA 69 + 0 69 82974 55 2 1 13 chain 19388 chr6_GL000251v2_alt 4795265 + 89310 89651 THE1B 368 + 0 368 57141 44 24 39 24 10 11 54 1 0 24 1 0 5 29 42 125 chain 6713 chr6_GL000251v2_alt 4795265 + 97031 97103 tRNA-Ala-GCY_ 72 + 0 72 78600 72 chain 44676 chr6_GL000251v2_alt 4795265 + 97784 98322 LTR14 556 + 2 556 31755 208 0 8 245 12 20 73 chain 564065 chr6_GL000251v2_alt 4795265 + 111109 117257 L1PA3long 6157 + 12 6157 111 1624 7 1 2307 0 1 1362 0 1 13 0 1 835 chain 6930 chr6_GL000251v2_alt 4795265 + 133281 133353 tRNA-Ala-GCG 72 + 0 72 77850 72 chain 24444 chr6_GL000251v2_alt 4795265 + 140813 141097 AluSq10 312 + 8 293 50107 253 0 1 31 chain 18417 chr6_GL000251v2_alt 4795265 + 143686 143983 Tigger3b 1229 + 648 945 58211 49 3 1 7 0 4 56 19 20 96 14 11 53 chain 4764 chr6_GL000251v2_alt 4795265 + 150017 150089 MLT2D 439 + 52 128 86892 36 1 5 35 chain 3071 chr6_GL000251v2_alt 4795265 + 172973 173007 LTR5_Hs 974 + 783 817 99096 34 chain 498344 chr6_GL000251v2_alt 4795265 + 173232 181010 HERVK-int 6823 + 0 6561 3188 5 1 0 12 4 2 23 1 0 20 1 0 12 1 0 26 1 0 21 1 0 12 2 0 322 1 0 159 0 1 4 1 0 37 10 8 24 1 0 18 100 0 7 0 3 303 6 5 380 1 0 52 1 0 37 22 36 256 0 2 9 28 33 7 0 1 179 3 6 374 0 1 331 0 3 76 6 7 226 11 12 4 1 0 17 8 0 799 981 0 1083 3 0 83 7 0 476 1 0 14 1 0 184 0 2 11 1 0 23 1 0 42 0 1 57 1 0 36 1 0 122 1 0 51 3 0 5 1 0 8 4 2 73 2 0 12 1 0 21 17 11 11 1 0 20 2 0 3 1 0 8 1 0 5 172 101 9 2 0 12 1 0 14 6 4 10 3 0 28 40 29 10 19 12 8 1 0 5 1 0 26 1 0 4 1 0 12 35 26 15 chain 6713 chr6_GL000251v2_alt 4795265 + 200381 200453 tRNA-Ala-GCY_ 72 + 0 72 78599 72 chain 6975 chr6_GL000251v2_alt 4795265 + 210382 210454 tRNA-Ala-GCY_ 72 + 0 72 77690 72 chain 6654 chr6_GL000251v2_alt 4795265 + 216698 216772 tRNA-Thr-ACY_ 74 + 0 74 78801 74 chain 6181 chr6_GL000251v2_alt 4795265 + 219990 220062 tRNA-Ala-GCY_ 72 + 0 72 80425 72 chain 6029 chr6_GL000251v2_alt 4795265 + 238411 238484 tRNA-Lys-AAA 73 + 0 73 80973 73 chain 6258 chr6_GL000251v2_alt 4795265 + 255080 255149 tRNA-Phe-TTY 73 + 0 69 80142 69 chain 44463 chr6_GL000251v2_alt 4795265 + 267305 267927 LTR71B 605 + 0 605 31852 127 61 52 173 3 1 163 6 0 89 chain 2947 chr6_GL000251v2_alt 4795265 + 287548 287579 U2 167 + 0 31 100399 31 chain 193575 chr6_GL000251v2_alt 4795265 + 320502 322760 L1PA6 6164 + 3939 6162 9949 423 0 4 283 1 0 674 10 0 434 24 0 396 4 0 9 chain 405680 chr6_GL000251v2_alt 4795265 + 340735 345423 L1PA5 6144 + 1436 6129 5078 664 0 3 67 2 0 42 1 0 101 9 7 876 1 0 1145 0 4 415 0 1 967 0 1 190 0 1 72 5 6 131 chain 8544 chr6_GL000251v2_alt 4795265 + 348393 348496 MER57A1 433 + 325 428 73582 103 chain 2737 chr6_GL000251v2_alt 4795265 + 355596 355674 MER39 703 + 449 528 102069 17 35 36 26 chain 7021 chr6_GL000251v2_alt 4795265 + 372083 372156 tRNA-Arg-CGG 73 + 0 73 77527 73 chain 3393 chr6_GL000251v2_alt 4795265 + 376513 376561 LTR12C 1709 + 955 1004 96150 31 1 2 16 chain 8044 chr6_GL000251v2_alt 4795265 + 427458 427564 tRNA-Leu-TTG 101 + 0 101 74768 40 2 0 9 6 3 49 chain 4220 chr6_GL000251v2_alt 4795265 + 430979 431023 tRNA-Met_ 45 + 0 44 90010 44 chain 6881 chr6_GL000251v2_alt 4795265 + 437435 437508 tRNA-Lys-AAA 73 + 0 73 78028 73 chain 139244 chr6_GL000251v2_alt 4795265 + 444070 445772 LTR12C 1709 + 0 1709 13164 104 5 4 250 0 1 328 0 1 149 1 0 240 0 6 28 1 0 6 2 0 107 0 4 481 chain 381226 chr6_GL000251v2_alt 4795265 + 447915 454567 L1PB1 5432 + 34 5424 5461 18 1 2 250 1 2 258 300 0 134 8 0 7 5 13 90 0 2 168 1 0 107 0 1 142 0 2 86 341 332 175 1 0 458 0 2 210 7 0 53 0 4 280 624 0 309 0 1 28 7 0 190 0 1 124 1 5 122 1 3 113 5 6 107 10 14 284 0 2 99 0 1 266 1 2 110 14 9 81 0 1 96 1 0 99 2 1 22 0 1 176 1 2 9 3 0 13 8 7 13 1 0 9 343 13 51 2 1 11 3 13 36 1 0 12 0 6 13 48 34 24 1 0 21 1 0 13 2 1 15 1 0 4 chain 6975 chr6_GL000251v2_alt 4795265 + 468672 468744 tRNA-Glu-GAG_ 72 + 0 72 77696 72 chain 20433 chr6_GL000251v2_alt 4795265 + 474323 474558 AluSp 311 + 5 239 55850 106 2 1 127 chain 7808 chr6_GL000251v2_alt 4795265 + 475475 475557 tRNA-Leu-CTY 82 + 0 82 75357 82 chain 8214 chr6_GL000251v2_alt 4795265 + 496864 497098 L1MC1 2226 + 1918 2098 74373 61 18 13 47 93 44 15 chain 17255 chr6_GL000251v2_alt 4795265 + 502042 502347 LTR12C 1709 + 778 1086 59515 51 0 81 133 78 0 43 chain 7108 chr6_GL000251v2_alt 4795265 + 533000 533204 L1MA10 1535 + 1329 1501 77234 59 42 25 24 51 36 28 chain 45792 chr6_GL000251v2_alt 4795265 + 554939 555823 L1PB1 5432 + 3934 4505 31173 385 307 0 20 7 0 78 0 1 87 chain 3758 chr6_GL000251v2_alt 4795265 + 555823 555908 L1PB1 5432 + 4506 4585 93145 16 7 11 18 2 1 14 9 0 19 chain 17296 chr6_GL000251v2_alt 4795265 + 555909 556165 L1PB1 5432 + 4585 4838 59466 41 3 0 143 1 0 28 0 1 7 16 16 17 chain 39797 chr6_GL000251v2_alt 4795265 + 556165 556798 L1PB1 5432 + 4839 5414 34826 264 39 11 24 1 0 9 1 0 11 15 9 52 1 0 10 11 10 42 1 0 17 15 0 29 7 4 15 2 0 24 1 0 22 0 3 9 1 0 10 chain 20632 chr6_GL000251v2_alt 4795265 + 565260 565547 L1PA7 6471 + 6177 6466 55589 96 0 1 34 15 16 122 8 8 12 chain 29967 chr6_GL000251v2_alt 4795265 + 642801 643160 L1P1 4361 + 3334 3691 42086 349 2 0 8 chain 4048 chr6_GL000251v2_alt 4795265 + 650166 650209 L1PA2 6032 + 5725 5768 91094 43 chain 38130 chr6_GL000251v2_alt 4795265 + 673615 674097 MER9a3 513 + 0 485 35966 18 0 2 86 4 5 142 6 5 175 0 1 51 chain 3371 chr6_GL000251v2_alt 4795265 + 678681 678718 L1PA15 4387 + 2264 2301 96385 37 chain 3383 chr6_GL000251v2_alt 4795265 + 688395 688430 MER52A 1651 + 795 830 96271 35 chain 76110 chr6_GL000251v2_alt 4795265 + 703834 704920 THE1C-int 1605 + 497 1598 22537 176 94 88 24 3 11 151 9 8 218 1 11 112 0 3 95 0 1 106 0 1 37 1 0 59 chain 9622 chr6_GL000251v2_alt 4795265 + 720040 720146 L1PA2 6032 + 5926 6032 71217 106 chain 28152 chr6_GL000251v2_alt 4795265 + 740358 740816 MER4A1 472 + 0 472 44632 14 9 11 16 0 7 132 51 52 159 10 14 67 chain 30647 chr6_GL000251v2_alt 4795265 + 749562 750060 LTR19A 502 + 0 502 41427 71 0 1 61 0 1 52 38 1 15 0 36 73 1 2 63 45 46 38 0 1 41 chain 517813 chr6_GL000251v2_alt 4795265 + 760016 765895 L1PA4 6152 + 2 5881 2376 125 14 0 15 10 24 252 0 3 6 4 1 14 6 7 795 8 6 1097 0 1 4 1 0 1692 0 1 1836 chain 182351 chr6_GL000251v2_alt 4795265 + 768744 770959 L1PA7 6471 + 4233 6467 10479 441 0 4 277 1 0 367 0 1 291 0 3 60 9 1 377 0 4 126 10 11 123 1 16 132 chain 4686 chr6_GL000251v2_alt 4795265 + 782714 782769 MER52D 1964 + 1150 1205 87351 55 chain 32612 chr6_GL000251v2_alt 4795265 + 783022 783466 LTR7 482 + 0 476 39852 101 15 14 110 4 3 39 0 31 21 0 2 98 13 14 43 chain 90202 chr6_GL000251v2_alt 4795265 + 785644 786654 L1PA4 6152 + 4169 5186 19646 179 0 4 57 0 1 380 0 2 394 chain 26512 chr6_GL000251v2_alt 4795265 + 827259 827621 THE1D 372 + 0 372 46965 35 2 0 33 1 11 111 0 3 125 0 1 21 2 0 32 chain 449108 chr6_GL000251v2_alt 4795265 + 846780 852918 L1PA8 5853 + 108 5852 4410 189 23 11 128 0 1 11 8 12 210 1 2 94 25 16 189 0 6 522 1 0 6 0 1 43 2 1 284 0 1 182 3 1 195 0 1 348 0 1 4 12 0 641 0 6 6 22 15 75 0 1 263 0 2 115 23 25 247 0 1 132 10 11 263 1 0 29 331 0 154 45 10 255 0 1 55 10 4 127 5 4 553 1 0 46 2 0 57 0 1 12 2 1 13 7 6 42 2 1 19 1 0 92 chain 170025 chr6_GL000251v2_alt 4795265 + 893005 895018 L1PA7 6471 + 4459 6470 11103 1038 2 1 122 1 4 379 0 2 217 7 1 247 chain 2947 chr6_GL000251v2_alt 4795265 + 941356 941387 U2 167 + 0 31 100398 31 chain 53120 chr6_GL000251v2_alt 4795265 + 960527 961123 L1PA4 6152 + 5543 6138 28530 349 1 0 246 chain 3755 chr6_GL000251v2_alt 4795265 + 1026251 1026295 MER81 114 + 1 45 93183 44 chain 64589 chr6_GL000251v2_alt 4795265 + 1044694 1045470 LTR17 781 + 0 781 25292 256 0 1 70 0 1 101 1 2 83 0 1 56 0 1 209 chain 3823 chr6_GL000251v2_alt 4795265 + 1079084 1079159 LTR39 781 + 464 539 92694 31 7 8 23 4 3 10 chain 4874 chr6_GL000251v2_alt 4795265 + 1081823 1081882 Tigger2b_Pri 1066 + 52 112 86302 22 0 1 37 chain 4701 chr6_GL000251v2_alt 4795265 + 1101244 1101314 L1MC1 2226 + 2129 2196 87264 6 1 0 17 1 0 32 1 0 12 chain 4440 chr6_GL000251v2_alt 4795265 + 1138637 1138709 MER45C 884 + 80 153 88660 53 7 8 12 chain 23272 chr6_GL000251v2_alt 4795265 + 1166122 1166404 AluSp 311 + 0 287 51973 19 0 1 83 0 4 180 chain 11065 chr6_GL000251v2_alt 4795265 + 1177669 1177988 L1PB1 5432 + 5120 5413 68459 18 1 0 9 16 11 9 2 0 53 2 1 16 24 23 20 1 0 21 27 16 10 4 5 14 2 0 6 10 10 8 1 0 21 1 0 10 1 0 12 chain 8662 chr6_GL000251v2_alt 4795265 + 1234215 1234316 HY3 101 + 0 101 73315 101 chain 57889 chr6_GL000251v2_alt 4795265 + 1258598 1259408 Charlie9 784 + 0 784 27003 33 1 0 10 0 1 110 1 0 41 0 1 256 10 6 4 1 0 8 1 0 4 1 0 4 1 0 6 5 0 5 1 0 4 1 0 15 13 0 184 0 2 90 chain 6716 chr6_GL000251v2_alt 4795265 + 1259476 1259565 L1PA10 4194 + 4064 4150 78585 53 3 0 33 chain 495205 chr6_GL000251v2_alt 4795265 + 1263571 1269618 L1PA6 6164 + 13 6161 3287 96 1 0 7 3 4 13 25 11 57 0 1 289 1 2 16 2 1 116 0 1 301 0 25 222 4 13 1144 1 2 855 0 1 74 0 8 33 0 1 645 1 2 415 0 4 110 0 2 423 11 9 131 5 7 202 0 60 12 0 1 502 0 1 110 0 2 210 3 0 7 chain 55500 chr6_GL000251v2_alt 4795265 + 1269826 1270655 Charlie9 784 + 0 784 27718 32 0 1 119 1 0 35 13 7 120 10 9 134 15 4 9 1 0 8 1 0 6 5 0 8 3 1 10 23 5 276 chain 4778 chr6_GL000251v2_alt 4795265 + 1270728 1270824 L1PA10 4194 + 4069 4159 86807 7 3 0 27 6 7 7 3 0 33 1 0 9 chain 3063 chr6_GL000251v2_alt 4795265 + 1301970 1302014 LTR16B2 458 + 159 204 99200 11 1 2 32 chain 58283 chr6_GL000251v2_alt 4795265 + 1304638 1305463 Charlie9 784 + 0 784 26873 32 0 1 150 16 0 19 9 10 178 0 8 58 8 0 5 3 0 9 1 0 7 2 0 7 1 0 9 1 0 10 20 5 29 1 0 179 3 0 68 chain 6917 chr6_GL000251v2_alt 4795265 + 1316020 1316120 Charlie12 129 + 30 129 77900 29 6 7 31 1 0 5 1 0 27 chain 36071 chr6_GL000251v2_alt 4795265 + 1328930 1329480 LTR10F 562 + 0 535 37362 111 0 28 89 0 3 31 83 37 182 0 1 16 3 2 35 chain 1987 chr6_GL000251v2_alt 4795265 + 1329161 1329205 LTR10F 562 + 147 191 79923 44 chain 32045 chr6_GL000251v2_alt 4795265 + 1363584 1364061 Charlie9 784 + 0 457 40316 23 0 1 7 0 1 44 0 1 75 1 0 35 11 5 136 2 1 69 24 9 50 chain 51941 chr6_GL000251v2_alt 4795265 + 1401166 1402001 Charlie9 784 + 0 784 28888 30 1 2 122 1 0 12 43 28 78 2 1 5 0 1 25 26 30 123 6 0 4 4 0 9 1 0 6 3 1 7 5 0 8 3 1 10 27 5 197 0 2 77 chain 33793 chr6_GL000251v2_alt 4795265 + 1416450 1416907 Charlie9 784 + 0 453 38854 24 6 8 122 1 0 12 0 1 20 12 7 133 1 0 126 chain 3049 chr6_GL000251v2_alt 4795265 + 1426225 1426260 MER30B 195 + 16 51 99314 35 chain 106027 chr6_GL000251v2_alt 4795265 + 1442328 1443646 L1PA7 6471 + 5179 6461 17560 422 0 5 8 1 0 338 9 1 29 0 1 153 0 1 62 39 3 41 0 2 216 chain 147893 chr6_GL000251v2_alt 4795265 + 1458257 1459891 L1PA3long 6157 + 4508 6142 12491 1634 chain 166861 chr6_GL000251v2_alt 4795265 + 1505054 1507612 L1PB1 5432 + 3093 5360 11282 170 0 1 275 0 3 194 8 1 20 1 0 205 5 6 347 0 1 124 1 0 64 1 2 120 4 0 219 276 0 66 7 6 41 10 3 53 0 2 81 0 24 17 1 0 8 1 0 12 5 1 9 11 9 43 2 1 15 1 0 44 1 0 16 1 0 6 59 44 14 chain 22283 chr6_GL000251v2_alt 4795265 + 1588078 1588370 AluSq 315 + 8 302 53434 119 17 19 156 chain 3918 chr6_GL000251v2_alt 4795265 + 1603147 1603201 MER53 195 - 12 65 91989 6 1 0 47 chain 70311 chr6_GL000251v2_alt 4795265 + 1619685 1620523 L1PA7 6471 + 5617 6457 23917 152 0 1 537 8 9 141 chain 4035 chr6_GL000251v2_alt 4795265 + 1631063 1631192 MIR 256 + 54 195 91189 19 65 77 45 chain 468822 chr6_GL000251v2_alt 4795265 + 1727740 1733134 L1PA5 6144 + 607 6138 3886 5 0 2 77 7 0 72 0 128 157 1 0 5 0 1 1688 0 1 421 1 0 342 1 2 833 0 4 27 0 2 106 2 1 794 0 4 8 0 1 34 0 1 198 0 2 615 chain 4719 chr6_GL000251v2_alt 4795265 + 1836211 1836268 MER20 218 + 98 155 87139 57 chain 126584 chr6_GL000251v2_alt 4795265 + 1864907 1866694 L1PB2 3958 + 1118 2874 14468 85 0 1 50 1 0 25 6 7 55 0 2 125 6 9 105 5 4 11 5 4 43 1 4 121 0 1 373 7 8 167 4 5 111 0 1 47 54 12 13 1 0 355 0 1 11 chain 98791 chr6_GL000251v2_alt 4795265 + 1886789 1888026 THE1A-int 1579 + 341 1579 18438 851 1 2 385 chain 79374 chr6_GL000251v2_alt 4795265 + 1890987 1891934 LTR13_ 950 + 0 950 21770 579 2 1 277 0 4 89 chain 202239 chr6_GL000251v2_alt 4795265 + 1905046 1908086 L1PA11 4918 + 1644 4517 9630 153 1 0 15 5 2 306 0 4 136 0 4 49 0 1 204 0 3 214 4 7 375 1 8 11 32 155 42 1 5 62 1 5 105 2 0 152 320 0 34 1 0 89 5 6 384 0 1 152 5 0 65 2 1 13 12 11 51 7 21 18 2 0 9 chain 508100 chr6_GL000251v2_alt 4795265 + 1909970 1916103 L1PA6 6164 + 0 6159 2842 128 14 0 70 3 4 307 2 1 418 0 25 197 29 38 501 1 0 643 1 2 776 3 0 79 0 1 435 0 1 77 3 1 975 8 7 771 9 10 17 0 1 512 13 14 77 0 7 64 chain 38906 chr6_GL000251v2_alt 4795265 + 1951414 1951933 L1PBa 3878 + 891 1420 35423 63 4 8 22 1 6 97 0 1 4 3 2 277 3 4 45 chain 200719 chr6_GL000251v2_alt 4795265 + 1953601 1959290 L1PB1 5432 + 2253 5422 9701 183 2 3 11 3 2 46 1 2 322 2434 247 210 305 0 332 0 2 27 0 1 79 3 0 6 9 14 623 24 23 100 0 1 16 0 1 50 2 4 68 3 0 55 0 1 32 1 0 88 5 4 189 32 32 71 19 17 19 1 0 10 1 0 13 6 2 9 2 0 52 2 1 16 6 5 37 2 1 16 2 0 10 5 1 5 5 0 14 26 21 23 1 0 22 1 0 12 1 0 11 1 0 7 chain 135392 chr6_GL000251v2_alt 4795265 + 1954225 1955734 SVA_D 2077 + 42 2075 13501 570 1 0 184 0 40 80 6 495 66 4 0 598 chain 10465 chr6_GL000251v2_alt 4795265 + 1964812 1965065 L1PB1 5432 + 5023 5219 69479 75 58 10 6 1 0 24 8 6 14 5 1 9 4 2 49 chain 9482 chr6_GL000251v2_alt 4795265 + 1965066 1965302 L1PB1 5432 + 5219 5430 71517 18 2 1 42 1 0 16 4 0 15 9 0 15 9 6 11 18 16 9 3 2 23 1 0 11 1 0 14 1 0 8 1 0 4 chain 13441 chr6_GL000251v2_alt 4795265 + 1994030 1994204 MER4A1 472 + 0 177 64403 99 1 3 29 0 1 45 chain 92037 chr6_GL000251v2_alt 4795265 + 1997520 1998925 LTR12D 1347 + 0 1347 19337 297 7 36 36 11 12 10 2 5 140 74 25 6 2 0 132 14 7 156 7 4 74 1 0 80 4 0 3 23 0 26 1 0 34 1 0 264 chain 2749 chr6_GL000251v2_alt 4795265 + 1998023 1998097 LTR12D 1347 + 567 678 80346 13 1 38 60 chain 499737 chr6_GL000251v2_alt 4795265 + 2000545 2006697 L1PA6 6164 + 13 6162 3135 369 38 32 4 0 1 30 19 0 7 0 4 107 8 7 213 0 17 378 0 3 668 0 1 177 6 0 153 7 9 141 2 1 16 32 22 469 1 3 512 0 1 231 76 76 49 0 1 229 1 0 48 0 2 514 0 2 384 1 2 335 0 1 83 1 0 367 0 5 313 0 8 8 2 1 6 7 0 135 1 0 4 chain 8341 chr6_GL000251v2_alt 4795265 + 2018975 2019086 L1MA7 2200 + 1520 1630 74055 33 1 0 77 chain 20517 chr6_GL000251v2_alt 4795265 + 2069100 2069336 AluY 311 + 62 299 55765 70 0 1 166 chain 10228 chr6_GL000251v2_alt 4795265 + 2322582 2322814 MER49 923 + 597 828 69950 53 23 25 5 2 0 75 53 52 21 chain 6612 chr6_GL000251v2_alt 4795265 + 2323082 2323333 MER61C 433 + 32 354 78939 8 2 0 25 21 111 13 0 1 5 19 15 23 62 64 12 15 0 6 1 0 39 chain 19660 chr6_GL000251v2_alt 4795265 + 2343997 2344241 7SK 245 + 0 245 56842 79 1 2 164 chain 41142 chr6_GL000251v2_alt 4795265 + 2353677 2354525 MER41A 554 + 28 554 33885 285 326 0 95 0 4 142 chain 382456 chr6_GL000251v2_alt 4795265 + 2445950 2450994 HERVL-int 5654 + 885 5654 5437 301 4 14 126 12 13 385 0 2 149 0 3 150 317 3 110 0 4 125 6 4 291 0 1 349 0 3 511 8 7 27 0 2 6 3 1 197 9 10 132 4 5 23 15 18 432 18 23 112 6 7 29 0 2 89 0 3 670 0 1 105 0 1 323 chain 29234 chr6_GL000251v2_alt 4795265 + 2450994 2451403 MLT2A1 477 + 0 477 42994 146 0 1 21 5 2 9 0 1 24 0 1 54 0 28 97 19 59 34 chain 109307 chr6_GL000251v2_alt 4795265 + 2479898 2481201 LTR12C 1709 + 0 1709 17139 260 1 26 364 0 278 184 1 0 5 3 1 106 0 4 168 0 102 211 chain 5871 chr6_GL000251v2_alt 4795265 + 2496858 2496922 LTR12C 1709 + 773 837 81595 64 chain 2851 chr6_GL000251v2_alt 4795265 + 2496923 2496991 LTR12C 1709 + 837 946 68185 50 0 41 18 chain 23147 chr6_GL000251v2_alt 4795265 + 2496991 2497300 LTR12C 1709 + 668 1033 52150 169 1 0 72 3 18 4 0 1 39 0 41 21 chain 143391 chr6_GL000251v2_alt 4795265 + 2500128 2501919 LTR12C 1709 + 0 1709 12827 262 0 1 574 83 0 274 1 0 6 5 3 104 0 4 276 1 0 205 chain 6313 chr6_GL000251v2_alt 4795265 + 2500965 2501047 LTR12C 1709 + 837 919 58044 82 chain 23449 chr6_GL000251v2_alt 4795265 + 2535643 2535984 THE1A 353 + 0 353 51682 62 37 49 242 chain 5411 chr6_GL000251v2_alt 4795265 + 2565414 2565478 U6 107 + 37 101 83654 64 chain 17269 chr6_GL000251v2_alt 4795265 + 2579991 2580211 MER50 708 + 473 701 59497 11 1 0 62 0 9 146 chain 4824 chr6_GL000251v2_alt 4795265 + 2649568 2649655 MER50B 698 + 483 568 86583 36 0 1 5 11 10 7 2 0 26 chain 131135 chr6_GL000251v2_alt 4795265 + 2677726 2679270 LTR12C 1709 + 1 1709 13912 690 0 159 65 0 2 195 1 0 5 7 5 102 0 4 118 0 2 361 chain 47533 chr6_GL000251v2_alt 4795265 + 2693602 2694218 LTR43 600 + 0 600 30466 294 16 0 306 chain 6749 chr6_GL000251v2_alt 4795265 + 2696644 2696727 L1MC 810 + 638 721 78477 83 chain 42471 chr6_GL000251v2_alt 4795265 + 2697545 2698098 MER41A 554 + 0 554 33079 42 0 15 7 16 1 332 1 0 4 0 1 59 0 1 92 chain 24407 chr6_GL000251v2_alt 4795265 + 2705672 2706107 MLT2A2 560 + 0 560 50161 178 2 0 15 29 34 75 2 111 45 0 5 9 57 65 23 chain 23137 chr6_GL000251v2_alt 4795265 + 2711454 2711743 AluSp 311 + 6 293 52165 275 3 1 11 chain 54815 chr6_GL000251v2_alt 4795265 + 2756357 2761038 L1PA8A 6298 + 5455 6290 27941 34 7 8 77 3860 0 238 2 14 124 0 1 24 1 2 205 3 1 8 3 4 4 1 0 46 3 4 41 chain 2948 chr6_GL000251v2_alt 4795265 + 2763643 2763711 L1PREC2 3366 + 1229 1299 100384 18 1 2 18 15 16 16 chain 9186 chr6_GL000251v2_alt 4795265 + 2805472 2805598 L1PA13 3608 + 3328 3448 72153 7 1 0 56 1 0 5 2 0 45 2 0 7 chain 63377 chr6_GL000251v2_alt 4795265 + 2809168 2809901 SVA_B 1603 + 878 1602 25550 13 1 0 20 1 0 4 8 5 7 1 0 36 4 0 92 0 1 546 chain 79143 chr6_GL000251v2_alt 4795265 + 2822996 2823899 L1PA5 6144 + 5237 6142 21825 716 0 2 187 chain 61158 chr6_GL000251v2_alt 4795265 + 2840814 2841625 L1PA8A 6298 + 5455 6289 26071 34 10 12 10 0 1 34 1 18 16 1 0 476 1 4 185 3 4 40 chain 3230 chr6_GL000251v2_alt 4795265 + 2842901 2842939 L1PREC2 3366 + 1229 1267 97670 38 chain 25647 chr6_GL000251v2_alt 4795265 + 2907287 2907628 MLT2A1 477 + 0 342 48249 4 1 0 28 1 0 110 0 1 24 6 10 27 2 0 138 chain 451813 chr6_GL000251v2_alt 4795265 + 2910192 2915855 HERVL-int 5654 + 0 5654 4341 203 0 4 23 0 3 13 5 3 5 0 3 154 2 0 238 1 0 425 0 1 354 0 1 426 0 1 71 19 20 169 67 7 143 0 3 176 3 0 417 0 1 328 0 1 565 0 12 181 0 4 82 0 4 230 5 6 30 0 2 115 1 2 136 0 3 191 0 6 226 0 2 235 6 5 146 2 1 53 0 1 76 1 6 49 4 5 87 chain 32624 chr6_GL000251v2_alt 4795265 + 2915855 2916309 MLT2A1 477 + 0 477 39841 142 0 1 26 1 5 30 2 0 194 20 40 39 chain 19023 chr6_GL000251v2_alt 4795265 + 2945040 2945376 THE1B 368 + 9 368 57527 35 1 16 114 74 79 53 0 3 59 chain 25700 chr6_GL000251v2_alt 4795265 + 2971891 2972191 AluSp 311 + 1 304 48172 140 0 3 160 chain 25044 chr6_GL000251v2_alt 4795265 + 2987433 2987815 LTR3A 482 + 27 420 49202 125 14 19 108 7 8 20 5 6 67 5 7 16 0 2 15 chain 18408 chr6_GL000251v2_alt 4795265 + 2999477 2999836 L1MA8 2339 + 1847 2188 58230 85 5 1 25 4 5 46 1 0 36 1 6 18 70 50 38 2 3 28 chain 11054 chr6_GL000251v2_alt 4795265 + 3248580 3248723 LTR7B 505 + 0 164 68481 108 0 10 21 0 11 14 chain 9226 chr6_GL000251v2_alt 4795265 + 3371098 3371326 L1MB3 1562 + 1260 1465 72068 17 0 2 72 1 0 16 86 64 7 2 0 27 chain 3468 chr6_GL000251v2_alt 4795265 + 3372398 3372438 MER44B 551 + 384 424 95469 40 chain 5414 chr6_GL000251v2_alt 4795265 + 3391660 3391738 MLT2C2 476 + 182 263 83637 28 3 6 47 chain 5497 chr6_GL000251v2_alt 4795265 + 3645629 3645693 L1MA3 4352 + 2970 3034 83246 64 chain 46127 chr6_GL000251v2_alt 4795265 + 3703673 3704184 L1PA4 6152 + 4485 5015 30998 315 0 19 196 chain 279663 chr6_GL000251v2_alt 4795265 + 3709332 3713597 L1PB1 5432 + 1743 5427 7431 679 0 4 73 0 1 8 0 5 64 0 5 248 0 4 8 3 0 157 9 1 7 5 0 187 0 2 232 1 6 51 0 1 6 0 1 121 0 1 4 2 1 86 1 0 17 30 8 18 1 0 681 0 1 46 27 32 115 3 0 158 564 16 287 20 21 9 3 0 23 1 0 9 1 0 9 9 5 7 2 0 9 0 3 40 2 1 15 1 0 43 0 8 9 14 1 30 2 0 5 1 0 14 2 0 24 1 0 21 4 3 10 1 0 14 1 0 5 1 0 4 chain 23597 chr6_GL000251v2_alt 4795265 + 3715403 3715778 MSTA 426 + 0 426 51439 104 26 54 78 32 29 33 0 26 102 chain 4377 chr6_GL000251v2_alt 4795265 + 3715778 3715827 MSTA-int 1630 + 0 49 89020 49 chain 392146 chr6_GL000251v2_alt 4795265 + 3717958 3723223 L1PA8 5853 + 50 5853 5288 15 8 6 11 1 0 13 52 13 60 0 3 134 0 4 153 8 9 158 306 0 25 8 5 20 0 1 337 1 0 128 0 1 871 2 1 62 0 1 160 0 863 105 8 6 518 0 3 300 0 1 20 0 2 23 0 6 282 1 0 317 9 17 85 3 0 99 2 1 204 0 1 397 0 10 59 3 2 46 2 0 54 1 0 5 1 2 10 1 0 9 9 8 44 2 1 19 4 3 90 chain 45618 chr6_GL000251v2_alt 4795265 + 3743458 3744053 PABL_A 660 + 0 620 31256 96 0 15 13 0 2 14 0 1 78 1 0 63 3 0 11 2 13 314 chain 26576 chr6_GL000251v2_alt 4795265 + 3746813 3747092 AluYa5 310 + 16 295 46870 279 chain 33447 chr6_GL000251v2_alt 4795265 + 3769918 3770368 LTR46 455 + 0 455 39135 30 9 10 147 1 5 212 1 0 14 0 1 36 chain 5223 chr6_GL000251v2_alt 4795265 + 3791009 3791073 U6 107 + 11 75 84577 64 chain 11790 chr6_GL000251v2_alt 4795265 + 3800468 3800653 MSTC 436 + 248 423 67233 63 23 19 37 6 0 56 chain 74532 chr6_GL000251v2_alt 4795265 + 3812427 3813402 HUERS-P2-int 2744 + 1558 2512 22952 358 4 5 327 33 13 107 1 2 4 1 0 66 1 0 48 5 4 20 chain 37481 chr6_GL000251v2_alt 4795265 + 3848544 3848941 L1HS 6032 + 5633 6030 36414 397 chain 27991 chr6_GL000251v2_alt 4795265 + 3872227 3872615 L1PA8 5853 + 5451 5853 44882 113 1 0 44 6 4 49 0 20 6 3 1 22 0 1 22 11 10 17 1 0 93 chain 45642 chr6_GL000251v2_alt 4795265 + 3890501 3891092 THE1B-int 1605 + 13 632 31239 255 0 2 156 0 25 109 5 6 66 chain 20637 chr6_GL000251v2_alt 4795265 + 3892363 3892681 THE1B 368 + 0 328 55575 107 2 3 59 2 1 22 41 51 85 chain 32395 chr6_GL000251v2_alt 4795265 + 3895610 3896206 L1PA15 4387 + 3749 4326 40040 64 52 42 36 3 1 40 1 0 107 0 1 60 6 11 14 6 5 55 1 0 21 4 0 9 1 0 41 34 31 27 3 1 11 chain 88477 chr6_GL000251v2_alt 4795265 + 3953608 3954582 LTR5_Hs 974 + 0 974 19950 974 chain 37470 chr6_GL000251v2_alt 4795265 + 3955850 3956379 LTR12 884 + 0 869 36424 53 0 239 89 2 0 242 35 105 23 0 33 85 chain 221742 chr6_GL000251v2_alt 4795265 + 3956469 3959413 HERV9-int 5642 + 0 3070 8987 338 13 14 39 3 4 86 2 4 107 29 28 85 8 12 69 6 5 83 4 3 226 91 8 277 6 207 93 6 1 6 0 1 458 9 4 67 1 0 526 0 12 116 7 8 183 chain 55842 chr6_GL000251v2_alt 4795265 + 3960531 3961267 LTR12 884 + 0 869 27615 91 0 132 120 23 0 13 0 22 81 1 2 193 0 1 214 chain 10180 chr6_GL000251v2_alt 4795265 + 4019275 4019405 L1MA7 2200 + 1410 1540 70053 130 chain 32953 chr6_GL000251v2_alt 4795265 + 4030177 4030623 MER4D1 891 + 439 891 39549 83 4 0 76 4 13 68 1 3 139 1 0 70 chain 54944 chr6_GL000251v2_alt 4795265 + 4034821 4035528 LTR30 714 + 0 704 27896 12 0 1 201 2 1 28 1 2 9 1 0 94 1 0 183 16 15 146 1 0 12 chain 28336 chr6_GL000251v2_alt 4795265 + 4085061 4085404 THE1A 353 + 0 342 44361 110 1 0 232 chain 129077 chr6_GL000251v2_alt 4795265 + 4085415 4087326 THE1A-int 1579 + 0 1574 14136 15 0 2 49 0 1 435 0 1 73 0 1 691 341 0 301 1 0 5 chain 29223 chr6_GL000251v2_alt 4795265 + 4087334 4087685 THE1A 353 + 3 353 43010 107 1 0 243 chain 163377 chr6_GL000251v2_alt 4795265 + 4105674 4108311 L1MA1 4479 + 1697 4190 11523 34 16 0 7 0 16 198 1 0 5 11 14 22 0 1 26 1 2 5 1 0 54 0 6 75 4 0 118 1 2 142 9 10 103 28 1 64 5 8 48 11 10 79 11 15 9 3 1 15 0 1 7 10 9 16 1 0 138 1 0 27 2 0 9 0 1 165 2 0 46 6 7 38 1 0 12 5 0 53 5 0 25 1 21 11 121 14 6 7 0 135 0 1 16 0 2 59 0 1 108 0 1 4 2 0 19 2 0 16 1 0 74 1 0 17 2 0 13 1 0 88 9 5 89 0 1 36 1 0 29 2 0 44 1 0 11 23 15 13 chain 30300 chr6_GL000251v2_alt 4795265 + 4111584 4112056 MLT2A2 560 + 1 560 41761 5 1 0 118 1 0 45 12 11 12 50 129 78 3 14 147 chain 29852 chr6_GL000251v2_alt 4795265 + 4118576 4119043 L1PA8 5853 + 5422 5853 42183 142 1 0 44 2 0 37 38 8 29 27 25 12 0 1 20 2 1 22 1 0 90 chain 42951 chr6_GL000251v2_alt 4795265 + 4147080 4147611 L1PA7 6471 + 5759 6292 32806 83 5 6 106 6 7 331 chain 14925 chr6_GL000251v2_alt 4795265 + 4147613 4147816 L1M1 2793 + 1889 2099 62359 119 0 4 59 4 7 21 chain 38964 chr6_GL000251v2_alt 4795265 + 4189160 4189676 MER9a1 513 + 0 513 35383 46 25 0 3 1 0 179 17 39 30 0 1 215 chain 56786 chr6_GL000251v2_alt 4795265 + 4195645 4196485 L1PA13 3608 + 218 1029 27330 73 2 0 115 34 32 7 2 0 15 27 8 12 2 1 19 3 1 15 2 0 11 6 5 9 0 1 87 2 1 364 0 2 33 chain 85288 chr6_GL000251v2_alt 4795265 + 4200807 4201973 L1PA11 4918 + 3401 4578 20574 257 4 3 35 1 0 443 0 1 119 0 1 50 0 4 17 1 5 58 1 0 13 2 0 68 19 16 17 4 0 11 6 22 13 1 0 13 2 0 11 chain 5358 chr6_GL000251v2_alt 4795265 + 4376598 4376726 MSTD 398 + 0 132 83920 15 53 57 60 chain 43401 chr6_GL000251v2_alt 4795265 + 4458853 4459392 THE1B-int 1605 + 0 587 32507 162 0 21 249 0 25 8 0 2 120 chain 256001 chr6_GL000251v2_alt 4795265 + 4464140 4468564 HERVK22-int 3844 + 15 3750 8090 23 3 0 194 0 1 289 0 1 45 1 4 107 4 5 16 2 0 372 4 1 113 9 1 341 0 1 426 8 12 82 1 0 330 9 7 275 0 1 335 2 3 48 1 0 66 5 4 6 1 0 16 6 5 32 1 0 21 2 0 39 15 10 45 159 119 19 10 7 28 826 198 87 chain 14475 chr6_GL000251v2_alt 4795265 + 4515038 4515387 L1PB1 5432 + 5109 5426 62926 6 3 0 21 1 0 10 30 26 47 1 0 17 1 0 39 6 5 16 25 13 17 25 20 24 1 0 23 1 0 11 1 0 18 1 0 4 chain 7851 chr6_GL000251v2_alt 4795265 + 4611105 4611195 HY4 93 + 0 90 75248 90 chain 5586 chr6_GL000251v2_alt 4795265 + 4626282 4626343 MER5A 189 + 30 91 82868 61 chain 136962 chr6_GL000251v2_alt 4795265 + 4757388 4759168 HERVH-int 3825 + 1637 3825 13341 49 3 30 65 20 5 304 1 6 32 1 4 360 30 31 296 0 367 57 11 22 132 0 1 113 0 8 306 chain 28413 chr6_GL000251v2_alt 4795265 + 4762892 4763279 LTR7B 505 + 0 505 44244 105 0 10 56 12 81 37 2 1 21 1 42 88 2 1 63 chain 23503 chr6_GL000251v2_alt 4795265 + 4766732 4767068 LTR14B 630 + 228 628 51590 46 7 53 17 7 18 85 0 4 89 0 3 85 chain 22886 chr6_GL000251v2_alt 4795265 + 4780922 4781192 AluSc 308 + 9 284 52530 31 0 5 239 chain 3399 chr7_KI270899v1_alt 190869 + 19990 20033 LTR54B 464 + 200 246 96079 19 0 3 24 chain 235076 chr7_KI270899v1_alt 190869 + 39597 42153 L1PA3long 6157 + 3587 6143 8598 2556 chain 4915 chr7_KI270899v1_alt 190869 + 43012 43073 MER66B 489 + 386 447 86088 61 chain 8553 chr7_KI270899v1_alt 190869 + 50971 51081 MER30 238 + 131 238 73554 10 3 0 97 chain 26799 chr7_KI270899v1_alt 190869 + 122902 123215 L1PA5 6144 + 5832 6143 46542 164 0 2 128 1 0 9 3 0 8 chain 10731 chr7_KI270899v1_alt 190869 + 180308 180730 MER34C_ 573 + 35 509 68985 104 1 0 9 259 307 23 0 4 16 0 1 10 chain 11898 chr8_KI270901v1_alt 136959 + 67466 67788 L1PB 1623 + 1308 1586 67011 34 9 1 103 1 0 7 2 1 11 120 88 22 2 0 11 chain 14678 chr8_KI270901v1_alt 136959 + 114515 114769 L1PA8 5853 + 5599 5853 62699 11 14 12 36 0 2 18 2 1 11 1 0 12 2 0 38 2 1 19 1 0 48 1 5 32 0 2 6 chain 28884 chr8_KI270900v1_alt 318687 + 204997 205311 AluYb8 318 + 0 310 43507 126 4 0 184 chain 555080 chr8_KI270900v1_alt 318687 + 217307 223284 L1PA2 6032 + 51 6032 401 1960 0 3 1282 0 1 2735 chain 3456 chr11_KI270902v1_alt 106711 + 20976 21012 MLT1A 405 + 249 285 95584 36 chain 4267 chr11_KI270903v1_alt 214625 + 91535 91617 L1MD1 2063 + 1564 1638 89722 35 1 8 7 15 0 24 chain 71796 chr11_KI270903v1_alt 214625 + 117689 118646 LTR13 1007 + 0 969 23594 65 4 0 8 6 4 272 50 51 286 1 15 110 6 7 143 0 2 6 chain 49830 chr11_KI270903v1_alt 214625 + 177466 178014 L1PA5 6144 + 5580 6128 29624 548 chain 3552 chr11_KI270903v1_alt 214625 + 193684 193724 MADE1 96 + 52 92 94829 40 chain 15603 chr12_KI270904v1_alt 572349 + 30940 31119 L1PA2 6032 + 5847 6025 61528 39 0 1 132 2 0 6 chain 2974 chr12_KI270904v1_alt 572349 + 116637 116701 MSTB2 466 + 318 383 100114 27 19 20 18 chain 8321 chr12_KI270904v1_alt 572349 + 123824 123927 MER61F 604 + 471 572 74111 63 2 0 38 chain 27127 chr12_KI270904v1_alt 572349 + 239391 239716 L1PA7 6471 + 6138 6465 46083 185 0 5 131 3 0 6 chain 61474 chr12_KI270904v1_alt 572349 + 254984 255742 L1PA6 6164 + 5110 5877 25992 132 0 1 72 1 8 217 0 1 130 0 2 5 2 0 199 chain 165380 chr12_KI270904v1_alt 572349 + 297090 299004 L1PA5 6144 + 4213 6129 11387 415 1 0 578 0 2 86 1 0 222 3 4 545 1 2 62 chain 488439 chr12_KI270904v1_alt 572349 + 303399 309691 L1PA7 6471 + 0 6467 3457 227 32 32 150 1 2 489 3 4 452 1 0 29 0 1 109 12 15 275 0 1 197 0 2 5 2 1 69 12 13 68 0 11 50 0 2 33 0 1 106 2 0 6 0 2 50 2 1 116 0 2 115 1 2 285 0 1 688 1 0 738 0 3 115 0 1 138 0 2 228 0 85 253 0 1 20 1 0 9 1 0 311 0 1 40 5 64 65 26 22 66 0 4 448 6 8 49 38 32 8 0 5 139 chain 134324 chr12_KI270904v1_alt 572349 + 344316 345793 L1PA3long 6157 + 4680 6157 13616 1477 chain 22727 chr12_KI270904v1_alt 572349 + 409090 409344 L1PA3long 6157 + 4311 4565 52793 254 chain 315276 chr12_KI270904v1_alt 572349 + 414339 418762 L1PB1 5432 + 1083 5427 6497 88 0 1 82 11 12 63 0 2 74 1 25 79 0 8 203 0 13 187 26 3 329 0 1 112 23 15 120 0 3 176 0 1 150 3 0 155 1 7 25 0 24 85 0 1 45 0 2 36 6 7 40 2 9 13 0 2 441 8 18 222 0 2 28 0 1 311 0 1 4 1 0 17 0 1 158 13 15 128 3 0 15 0 1 167 1 2 117 0 1 172 1 2 9 124 0 24 1 0 9 1 0 4 22 16 53 3 2 15 2 1 42 1 0 16 15 2 29 2 0 5 5 4 10 2 0 8 7 6 10 1 0 21 1 0 13 1 0 14 1 0 5 1 0 4 chain 324272 chr12_KI270904v1_alt 572349 + 451028 455121 L1P3 4156 + 18 4139 6331 233 2 1 68 1 0 577 0 15 400 22 6 174 0 1 280 0 1 855 0 1 30 0 1 52 0 5 40 0 2 300 0 1 119 16 39 388 0 3 22 0 1 182 16 11 281 2 0 7 3 2 23 chain 50178 chr12_KI270904v1_alt 572349 + 457241 457922 L1PA8 5853 + 5179 5853 29494 383 1 0 48 2 0 69 36 34 25 4 3 19 1 0 93 chain 27135 chr12_KI270904v1_alt 572349 + 469584 469894 L1PA5 6144 + 5827 6137 46072 310 chain 34232 chr12_KI270904v1_alt 572349 + 481179 481597 L1PA6 6164 + 5744 6162 38538 418 chain 21179 chr12_KI270904v1_alt 572349 + 481610 483533 L1PA8 5853 + 2750 4685 10015 270 0 1 191 1 2 180 2 1 247 18 22 89 0 1 118 0 1 186 0 4 306 0 1 315 chain 517822 chr12_KI270904v1_alt 572349 + 485199 491264 L1PA4 6152 + 6 6084 2374 122 14 0 14 1 15 418 2 1 132 12 5 513 11 0 9 0 11 138 0 1 470 0 1 1314 0 1 120 0 1 222 1 2 101 0 3 280 0 6 669 0 7 719 1 0 666 0 1 23 2 1 46 0 1 45 chain 5562 chr12_KI270904v1_alt 572349 + 491329 491834 L1PA8 5853 + 4685 5193 10015 36 8 9 59 0 1 161 4 5 54 7 5 67 0 2 109 chain 556520 chr12_KI270904v1_alt 572349 + 492619 498648 L1PA2 6032 + 1 6032 331 3329 0 2 2700 chain 4295 chr12_KI270904v1_alt 572349 + 498669 499059 L1PA8 5853 + 5470 5853 10015 94 1 0 46 2 0 69 21 19 42 3 2 18 1 0 93 chain 470398 chr12_KI270904v1_alt 572349 + 509712 515065 L1PA4 6152 + 6 5881 3842 90 0 525 1501 1 0 78 0 2 905 1 0 76 7 6 102 4 5 643 2 0 696 1 0 1246 chain 53809 chr12_KI270904v1_alt 572349 + 553390 554004 L1PA4 6152 + 5536 6151 28279 465 4 5 145 chain 15517 chr12_KI270904v1_alt 572349 + 572160 572349 L1P1 4361 + 24 213 61628 189 chain 211023 chr15_KI270906v1_alt 196384 + 66382 68769 L1PA5 6144 + 3757 6144 9317 173 1 2 2156 20 19 37 chain 26746 chr15_KI270905v1_alt 5161414 + 21178 21545 THE1B 368 + 0 368 46619 12 3 1 25 1 6 64 5 4 9 0 1 78 3 1 167 chain 6289 chr15_KI270905v1_alt 5161414 + 21881 21978 THE1B 368 + 280 368 80036 26 10 1 61 chain 78141 chr15_KI270905v1_alt 5161414 + 27390 28476 MER11A 1151 + 0 1146 22061 55 0 99 22 8 0 54 1 0 64 4 0 149 0 1 94 0 1 145 0 1 150 25 1 11 8 15 21 18 0 37 0 1 60 6 7 78 5 9 71 chain 43620 chr15_KI270905v1_alt 5161414 + 29567 31182 THE1B-int 1605 + 0 629 32371 111 26 29 234 1014 0 58 7 32 165 chain 3880 chr15_KI270905v1_alt 5161414 + 80492 80534 MER39B 650 + 3 45 92291 42 chain 89285 chr15_KI270905v1_alt 5161414 + 95213 96234 L1PA7 6471 + 5434 6459 19805 180 0 3 519 0 1 322 chain 17096 chr15_KI270905v1_alt 5161414 + 128346 128666 MER1B 344 + 0 339 59700 16 69 86 114 4 0 42 17 23 58 chain 91205 chr15_KI270905v1_alt 5161414 + 132506 133494 L1PA3long 6157 + 5158 6146 19467 988 chain 50225 chr15_KI270905v1_alt 5161414 + 142458 143052 LTR10C 591 + 0 591 29472 37 0 1 221 4 0 332 chain 2547 chr15_KI270905v1_alt 5161414 + 146859 146902 LTR10C 591 + 111 151 103392 27 4 1 12 chain 158199 chr15_KI270905v1_alt 5161414 + 203745 205485 SVA_F 1814 + 12 1814 11861 876 2 114 89 50 0 723 chain 3286 chr15_KI270905v1_alt 5161414 + 204712 204762 SVA_F 1814 + 964 1013 67148 47 2 1 1 chain 27234 chr15_KI270905v1_alt 5161414 + 216344 216784 LTR12_ 688 + 0 554 45920 25 1 0 107 6 7 99 1 0 10 51 63 40 0 103 100 chain 4726 chr15_KI270905v1_alt 5161414 + 319528 319591 L1MB3 1562 + 1486 1549 87096 38 1 0 20 0 1 4 chain 3517 chr15_KI270905v1_alt 5161414 + 543007 543172 MER58B 340 + 159 323 95124 4 0 1 19 82 82 12 16 14 32 chain 71833 chr15_KI270905v1_alt 5161414 + 552540 553320 L1PA2 6032 + 4657 5438 23582 605 0 1 175 chain 60330 chr15_KI270905v1_alt 5161414 + 753242 753976 L1PA7 6471 + 5726 6459 26283 414 2 0 167 0 1 151 chain 46528 chr15_KI270905v1_alt 5161414 + 882015 882723 L1MA3 4352 + 1504 2208 30833 24 1 0 47 10 7 28 17 16 25 1 0 120 2 1 10 1 2 5 0 3 99 1 0 89 2 1 77 5 6 144 chain 91643 chr15_KI270905v1_alt 5161414 + 965397 966462 MER11C 1089 + 0 1073 19384 225 0 5 356 12 13 394 0 2 78 chain 406446 chr15_KI270905v1_alt 5161414 + 1438452 1443882 L1PB1 5432 + 31 5424 5065 17 12 11 342 3 0 5 1 2 200 14 10 81 0 4 519 0 1 172 1 0 6 3 0 2 11 0 193 0 6 38 11 16 466 0 7 176 11 10 106 0 1 73 9 0 235 0 1 111 3 0 12 21 32 44 1 0 518 0 1 284 0 3 343 6 7 74 0 1 467 3 0 23 0 3 383 10 5 53 8 7 12 1 0 20 1 0 12 17 12 9 2 0 53 2 1 10 7 6 44 45 28 18 3 1 4 1 0 14 10 8 16 1 0 21 1 0 13 1 0 16 1 0 4 chain 84777 chr15_KI270905v1_alt 5161414 + 1489282 1490260 L1PA5 6144 + 5160 6144 20664 137 8 12 9 2 3 541 0 1 281 chain 28760 chr15_KI270905v1_alt 5161414 + 1490746 1491103 MLT2A1 477 + 0 354 43694 165 18 15 174 chain 62743 chr15_KI270905v1_alt 5161414 + 1493901 1494679 L1PB1 5432 + 3840 4626 25700 619 11 19 148 chain 29123 chr15_KI270905v1_alt 5161414 + 1494685 1495075 L1PB1 5432 + 4626 5009 43155 110 0 1 5 2 1 72 8 0 112 0 1 81 chain 20439 chr15_KI270905v1_alt 5161414 + 1495075 1495530 L1PB1 5432 + 5010 5424 55842 93 9 0 11 1 0 24 1 0 9 1 0 9 6 2 9 2 0 53 2 1 16 1 0 29 95 78 26 1 0 16 7 6 12 1 0 16 1 0 4 chain 13479 chr15_KI270905v1_alt 5161414 + 1527213 1527387 MER30 238 + 49 228 64338 58 5 10 111 chain 34617 chr15_KI270905v1_alt 5161414 + 1546937 1547415 LTR2B 499 + 9 499 38272 4 0 1 60 3 0 31 0 19 117 18 13 54 0 1 8 2 1 181 chain 40547 chr15_KI270905v1_alt 5161414 + 1549089 1549616 MLT2A2 560 + 16 560 34271 17 0 5 145 1 0 219 0 11 71 7 9 67 chain 3399 chr15_KI270905v1_alt 5161414 + 1593759 1593797 Tigger1 2417 + 2210 2248 96081 38 chain 160623 chr15_KI270905v1_alt 5161414 + 1662822 1664614 L1PA5 6144 + 4333 6132 11709 566 0 1 449 0 3 180 0 1 151 0 2 446 chain 349424 chr15_KI270905v1_alt 5161414 + 1689261 1693152 L1PA4 6152 + 2250 6151 5915 915 0 1 296 4 1 197 0 1 229 0 2 462 0 4 998 0 3 563 0 2 227 chain 476749 chr15_KI270905v1_alt 5161414 + 1780645 1786686 L1PA7 6471 + 693 6459 3703 521 3 0 341 0 1 215 1 5 445 3 4 108 0 1 63 0 1 87 1 0 96 0 1 517 5 9 188 0 2 38 1 0 212 1 5 526 0 1 103 2 0 53 1 0 154 0 1 564 2 1 78 1 0 219 0 1 348 0 4 483 0 3 2 294 0 216 1 0 115 0 1 33 chain 22796 chr15_KI270905v1_alt 5161414 + 1786039 1786321 AluY 311 + 18 297 52668 13 0 1 93 1 0 112 4 1 59 chain 18995 chr15_KI270905v1_alt 5161414 + 1942178 1942540 THE1C 375 + 0 355 57556 87 0 1 17 8 9 62 0 2 8 68 63 26 19 13 67 chain 42291 chr15_KI270905v1_alt 5161414 + 1947496 1947992 L1PA5 6144 + 5646 6142 33196 338 7 7 151 chain 36235 chr15_KI270905v1_alt 5161414 + 1970534 1971098 LTR12F 595 + 0 595 37248 98 0 41 38 17 8 21 0 9 172 17 3 19 35 37 101 0 2 46 chain 12576 chr15_KI270905v1_alt 5161414 + 2039234 2039433 Tigger3a 397 + 161 377 65837 4 1 0 12 18 20 136 4 20 24 chain 90093 chr15_KI270905v1_alt 5161414 + 2100915 2102130 L1PA8 5853 + 4678 5846 19665 214 0 3 33 2 1 74 11 12 55 27 1 415 2 0 80 1 0 42 2 0 71 8 0 8 4 0 4 5 0 15 0 1 10 1 0 23 2 1 19 1 0 86 chain 13146 chr15_KI270905v1_alt 5161414 + 2160312 2160804 MER30 238 + 31 238 64857 73 317 29 57 0 3 45 chain 119160 chr15_KI270905v1_alt 5161414 + 2180649 2182209 THE1B-int 1605 + 17 1598 15667 57 1 0 97 2 1 258 1 26 106 5 6 75 3 0 7 5 0 102 6 15 195 6 2 171 25 24 383 3 4 52 chain 183708 chr15_KI270905v1_alt 5161414 + 2304921 2307220 L1PA8 5853 + 707 3002 10398 379 0 1 30 0 1 82 26 22 118 8 9 225 11 6 164 0 1 6 0 1 265 2 1 373 0 1 458 9 10 137 1 0 5 chain 25042 chr15_KI270905v1_alt 5161414 + 2337764 2338094 L1P4 1494 + 420 754 49206 40 1 0 82 7 12 200 chain 5196 chr15_KI270905v1_alt 5161414 + 2348571 2348642 MLT2C2 476 + 38 108 84696 57 1 0 13 chain 104381 chr15_KI270905v1_alt 5161414 + 2351948 2353086 L1PA3long 6157 + 4413 5551 17771 1138 chain 64999 chr15_KI270905v1_alt 5161414 + 2384144 2384854 L1PA3long 6157 + 5446 6157 25189 671 0 1 39 chain 10465 chr15_KI270905v1_alt 5161414 + 2390802 2390949 MER1A 529 + 339 487 69482 120 11 12 16 chain 63265 chr15_KI270905v1_alt 5161414 + 2443875 2444578 L1PA4 6152 + 4001 4704 25568 703 chain 24526 chr15_KI270905v1_alt 5161414 + 2494055 2494348 AluSg7 307 + 10 302 49987 67 1 0 225 chain 136347 chr15_KI270905v1_alt 5161414 + 2549994 2552575 L1PBa 3878 + 29 1928 13407 9 3 0 4 0 1 5 3 0 12 29 21 4 1 0 5 2 0 10 1 0 45 78 26 42 1 0 7 11 0 17 2 0 78 0 1 57 1 2 25 21 35 89 1 0 171 0 1 21 0 1 223 0 1 4 1 0 668 3 0 111 613 0 203 chain 14228 chr15_KI270905v1_alt 5161414 + 2721347 2721554 MER30 238 + 0 238 63294 14 0 18 75 4 21 40 1 0 30 3 0 40 chain 36592 chr15_KI270905v1_alt 5161414 + 2795085 2795570 MER1A 529 + 46 529 37019 410 20 18 55 chain 65080 chr15_KI270905v1_alt 5161414 + 2852910 2853620 L1PA3long 6157 + 5446 6157 25172 671 0 1 39 chain 10465 chr15_KI270905v1_alt 5161414 + 2859507 2859654 MER1A 529 + 339 487 69481 120 11 12 16 chain 6080 chr15_KI270905v1_alt 5161414 + 2866126 2866222 U8 134 + 0 98 80797 44 13 15 39 chain 4447 chr15_KI270905v1_alt 5161414 + 2904048 2904109 Tigger3b 1229 + 476 536 88625 4 1 0 56 chain 5058 chr15_KI270905v1_alt 5161414 + 2959299 2959381 HY3 101 + 10 100 85363 18 8 12 21 0 4 35 chain 38053 chr15_KI270905v1_alt 5161414 + 2962793 2963469 L1PREC2 3366 + 2416 3051 36030 336 2 0 54 2 1 43 1 0 4 3 0 11 76 61 14 48 31 35 6 4 41 chain 60529 chr15_KI270905v1_alt 5161414 + 2973458 2974164 L1PA7 6471 + 5758 6464 26226 549 16 16 141 chain 387236 chr15_KI270905v1_alt 5161414 + 3022423 3027708 L1PB1 5432 + 65 5424 5367 7 9 0 329 1 0 108 2 0 361 1 0 16 1 0 307 53 62 90 8 9 41 1 0 7 16 1 319 1 0 197 0 3 179 0 1 188 0 1 54 5 7 140 1 0 31 0 1 94 1 2 19 18 0 234 0 38 264 21 112 78 1 2 15 0 1 99 0 4 506 1 0 617 8 15 15 0 1 164 15 11 231 0 1 5 1 0 20 0 1 20 23 21 24 1 0 9 16 11 11 3 1 50 2 1 16 1 0 44 1 0 15 3 0 8 16 7 16 10 7 12 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 456321 chr15_KI270905v1_alt 5161414 + 3060909 3066332 L1PA4 6152 + 10 5354 4223 111 7 21 473 0 4 117 1 0 274 106 0 1005 0 1 197 0 3 453 1 0 28 0 3 426 3 0 1199 1 0 434 7 10 535 0 4 11 1 2 33 chain 4676 chr15_KI270905v1_alt 5161414 + 3100015 3100325 L1ME3A 1206 + 654 937 87402 22 238 211 50 chain 10397 chr15_KI270905v1_alt 5161414 + 3133632 3133806 L1MA3 4352 + 4171 4352 69626 32 1 4 24 3 0 27 2 0 24 1 0 6 1 0 27 4 15 22 chain 131635 chr15_KI270905v1_alt 5161414 + 3169300 3170842 LTR12C 1709 + 0 1709 13859 309 0 1 4 1 0 439 0 161 196 10 7 13 0 4 85 0 1 4 0 4 481 chain 25015 chr15_KI270905v1_alt 5161414 + 3230010 3230314 AluSx4 309 + 0 300 49251 10 3 0 40 1 0 250 chain 25907 chr15_KI270905v1_alt 5161414 + 3283566 3283865 AluYd8 298 + 0 294 47852 89 5 0 205 chain 8753 chr15_KI270905v1_alt 5161414 + 3338110 3338217 L1MB3 1562 + 350 456 73094 80 1 0 26 chain 4930 chr15_KI270905v1_alt 5161414 + 3436126 3436184 MER61E 571 + 4 62 85997 58 chain 40109 chr15_KI270905v1_alt 5161414 + 3438221 3439094 MER4D1 891 + 8 589 34585 18 1 0 86 8 6 75 314 23 50 0 2 148 1 0 13 1 0 112 0 1 4 1 2 41 chain 10852 chr15_KI270905v1_alt 5161414 + 3441496 3441650 MER4E1 777 + 0 153 68772 17 2 0 34 1 2 100 chain 127651 chr15_KI270905v1_alt 5161414 + 3469748 3471236 SVA_B 1603 + 0 1603 14334 21 35 28 204 0 1 575 4 45 34 0 82 606 2 0 7 chain 29314 chr15_KI270905v1_alt 5161414 + 3484680 3485101 LTR7B 505 + 0 495 42854 102 2 13 41 1 2 17 0 38 12 3 27 26 0 2 85 1 0 76 14 13 41 chain 15376 chr15_KI270905v1_alt 5161414 + 3505865 3506104 MER1B 344 + 103 344 61819 96 19 18 50 15 18 59 chain 41870 chr15_KI270905v1_alt 5161414 + 3510337 3510882 MER41A 554 + 0 554 33443 42 4 5 150 19 27 330 chain 3898 chr15_KI270905v1_alt 5161414 + 3756545 3756621 MER20 218 + 30 109 92143 5 0 1 30 19 21 22 chain 26242 chr15_KI270905v1_alt 5161414 + 3820275 3820639 THE1D 372 + 0 371 47357 6 1 0 160 0 4 8 12 16 146 1 0 19 0 1 11 chain 46091 chr15_KI270905v1_alt 5161414 + 3861166 3861799 MER4A 717 + 0 634 31018 49 1 21 58 2 1 59 16 1 54 1 2 19 4 0 370 chain 530840 chr15_KI270905v1_alt 5161414 + 3883390 3889759 L1PA7 6471 + 35 6466 1796 61 4 5 142 0 1 8 6 4 146 1 0 10 1 0 333 4 6 26 6 5 470 15 34 709 15 0 127 6 53 444 0 1 20 0 1 625 0 2 228 3 1 47 0 4 111 0 3 754 0 1 251 0 12 466 2 1 1268 1 0 3 8 0 48 chain 305440 chr15_KI270905v1_alt 5161414 + 3894953 3899418 L1PB1 5432 + 33 5401 6711 177 17 34 56 0 3 38 0 1 21 27 1286 65 12 9 27 1 4 163 1 0 172 349 0 408 7 0 200 0 2 50 0 2 91 1 0 40 0 7 49 1 0 4 1 2 75 21 20 215 0 1 8 0 1 33 0 1 70 0 1 242 0 2 120 0 3 860 7 5 27 3 0 226 0 2 68 0 6 173 1 0 13 11 0 24 1 0 7 1 0 10 6 2 8 2 0 53 2 1 16 1 0 44 1 0 7 31 21 18 3 1 4 1 0 7 2 1 6 2 0 26 1 0 19 1 0 10 chain 4890 chr15_KI270905v1_alt 5161414 + 3925280 3925344 L1PB1 5432 + 5158 5220 86200 11 3 1 50 chain 10800 chr15_KI270905v1_alt 5161414 + 3925362 3925543 L1PB1 5432 + 5236 5420 68861 44 1 0 16 1 13 18 7 4 15 2 0 24 1 0 21 1 0 13 1 0 16 chain 16543 chr15_KI270905v1_alt 5161414 + 3964549 3964893 THE1D 372 + 2 328 60315 13 1 3 14 1 0 42 4 5 65 100 80 104 chain 29432 chr15_KI270905v1_alt 5161414 + 4019237 4019677 L1PA13 3608 + 3067 3497 42693 54 8 7 32 1 0 113 8 6 57 1 0 55 1 0 5 2 0 47 2 0 5 2 0 20 1 0 15 0 3 11 chain 117570 chr15_KI270905v1_alt 5161414 + 4134231 4135651 L1PA5 6144 + 4714 6128 15962 524 2 1 5 0 1 46 6 9 219 10 0 146 0 1 27 5 5 430 chain 41131 chr15_KI270905v1_alt 5161414 + 4184208 4184680 L1PA7 6471 + 5987 6459 33897 472 chain 4205 chr15_KI270905v1_alt 5161414 + 4208779 4208842 LTR12_ 688 + 459 520 90088 31 6 4 26 chain 3313 chr15_KI270905v1_alt 5161414 + 4219844 4219885 HERVL-int 5654 + 515 556 96899 41 chain 24219 chr15_KI270905v1_alt 5161414 + 4284713 4285055 L1PA8 5853 + 5517 5853 50463 47 1 0 43 3 1 71 2 0 9 1 0 6 0 1 45 2 1 4 0 1 14 1 0 8 0 1 78 1 0 6 chain 41041 chr15_KI270905v1_alt 5161414 + 4301552 4302101 MLT2A2 560 + 0 560 33939 122 11 7 64 2 5 201 3 14 34 0 1 112 chain 104664 chr15_KI270905v1_alt 5161414 + 4363649 4364988 L1PA10 4194 + 2818 4150 17731 125 0 1 12 10 0 827 10 17 218 3 6 52 4 0 37 9 6 24 1 0 7 chain 27160 chr15_KI270905v1_alt 5161414 + 4421891 4422201 AluYa5 310 + 0 309 46025 4 0 1 118 5 3 183 chain 5058 chr15_KI270905v1_alt 5161414 + 4432331 4432404 L1PA16 3655 + 3522 3592 85370 56 3 0 14 chain 555227 chr15_KI270905v1_alt 5161414 + 4468780 4474911 L1PA3long 6157 + 4 6146 394 522 4 0 312 0 1 138 0 1 211 0 3 613 1 3 1462 0 3 2031 0 4 42 1 2 663 1 0 102 0 1 28 chain 99093 chr15_KI270905v1_alt 5161414 + 4487379 4488499 L1PA4 6152 + 4966 6084 18403 327 0 1 13 4 0 696 0 1 80 chain 19763 chr15_KI270905v1_alt 5161414 + 4503588 4503923 Tigger3d 321 + 20 290 56719 164 0 1 16 15 0 9 29 0 6 22 0 74 chain 5909 chr15_KI270905v1_alt 5161414 + 4534639 4534711 MLT1C 463 + 117 189 81449 6 0 1 27 1 0 38 chain 9964 chr15_KI270905v1_alt 5161414 + 4569858 4569965 U6 107 + 0 107 70499 107 chain 40301 chr15_KI270905v1_alt 5161414 + 4569965 4570403 L1PA3long 6157 + 5715 6153 34448 438 chain 546496 chr15_KI270905v1_alt 5161414 + 4577974 4583998 L1PA3long 6157 + 4 6152 940 148 0 1 373 4 0 255 0 128 2559 0 1 523 3 1 2159 chain 53056 chr15_KI270905v1_alt 5161414 + 4586230 4587107 L1PB 1623 + 730 1575 28552 5 1 0 93 9 58 7 41 0 403 0 1 12 8 1 44 0 1 4 1 0 87 1 0 7 3 2 29 1 0 4 3 0 8 10 7 12 1 0 9 52 29 22 chain 23774 chr15_KI270905v1_alt 5161414 + 4592736 4593070 L1PA8 5853 + 5526 5853 51157 38 1 0 44 2 0 70 16 14 44 8 7 17 2 1 92 chain 36797 chr15_KI270905v1_alt 5161414 + 4766142 4766627 MER1A 529 + 46 529 36886 410 20 18 55 chain 4336 chr15_KI270905v1_alt 5161414 + 4823073 4823134 Tigger3b 1229 + 476 536 89262 4 1 0 56 chain 23884 chr15_KI270905v1_alt 5161414 + 4833245 4833538 AluY 311 + 12 290 50970 97 16 0 89 0 1 91 chain 27473 chr15_KI270905v1_alt 5161414 + 4903264 4903573 AluYk4 311 + 0 308 45607 132 1 0 176 chain 15649 chr15_KI270905v1_alt 5161414 + 4918292 4918509 MER1B 344 + 105 329 61469 157 18 25 42 chain 92008 chr15_KI270905v1_alt 5161414 + 4940745 4941917 L1P3 4156 + 2956 4139 19341 80 0 1 43 12 17 422 7 1 17 4 8 46 7 0 409 9 12 57 0 14 17 18 15 24 chain 11368 chr15_KI270905v1_alt 5161414 + 4968569 4968736 MSTB1 431 + 31 204 67973 4 1 0 25 2 4 72 4 9 59 chain 55295 chr15_KI270905v1_alt 5161414 + 5060717 5061387 L1PA8A 6298 + 5332 6024 27779 140 0 4 8 0 7 48 0 5 26 0 2 89 0 3 165 0 1 194 chain 11552 chr15_KI270905v1_alt 5161414 + 5082710 5082988 Tigger3c 601 + 364 543 67654 53 120 21 105 chain 26762 chr17_KI270907v1_alt 137721 + 55985 56337 THE1B 368 + 0 368 46597 40 1 16 31 0 1 78 7 6 163 0 1 32 chain 102467 chr17_KI270907v1_alt 137721 + 132821 133992 L1PA4 6152 + 4048 5227 18015 301 3 11 867 chain 13307 chr17_KI270910v1_alt 157099 + 5442 5969 MER30 238 + 0 232 64604 18 12 13 76 9 22 33 313 4 66 chain 81205 chr17_KI270910v1_alt 157099 + 21036 22023 LTR13 1007 + 0 1007 21390 381 2 3 62 1 0 49 17 21 140 0 10 149 0 1 93 0 5 93 chain 4915 chr17_KI270909v1_alt 325800 + 4739 4800 L1PA17 2846 + 22 82 86083 14 1 0 46 chain 21345 chr17_KI270909v1_alt 325800 + 65605 65936 MLT2A1 477 + 19 477 54710 123 8 9 18 1 5 82 0 92 32 1 0 5 11 43 29 1 0 20 chain 325501 chr17_KI270909v1_alt 325800 + 65936 69961 HERVL-int 5654 + 0 5654 6296 210 1 0 147 1 3 379 3 5 110 69 0 12 0 5 426 0 1 4 1 0 9 0 1179 52 0 1 459 0 7 491 0 1 87 1 15 173 0 12 574 0 1 297 0 484 6 0 1 63 1 2 5 13 0 213 0 1 82 1 2 135 chain 31954 chr17_KI270909v1_alt 325800 + 69961 70441 MLT2A1 477 + 0 477 40377 72 0 2 68 0 1 25 1 5 212 62 53 20 1 0 19 chain 5116 chr17_KI270909v1_alt 325800 + 70442 70501 LTR73 568 + 452 511 85075 59 chain 34547 chr17_KI270909v1_alt 325800 + 73153 73606 MER1A 529 + 64 520 38320 17 0 4 11 2 0 361 13 14 49 chain 84390 chr17_KI270909v1_alt 325800 + 74649 75728 L1PA8 5853 + 4782 5853 20733 229 2 0 82 0 1 425 0 3 42 1 0 45 2 0 70 1 0 8 5 4 17 0 2 30 2 1 15 5 4 16 5 0 77 chain 74184 chr17_KI270909v1_alt 325800 + 94149 95121 LTR5_Hs 974 + 0 974 23039 285 0 1 181 0 1 173 16 15 123 11 7 33 8 15 19 20 18 103 chain 3414 chr17_KI270909v1_alt 325800 + 171510 171559 MLT2A1 477 + 200 250 95966 10 1 2 38 chain 392379 chr17_KI270909v1_alt 325800 + 171865 176661 HERVL-int 5654 + 0 4753 5280 701 0 1 135 0 1 13 24 3 23 48 0 198 0 1 1221 0 3 18 0 1 141 12 4 263 0 3 770 0 1 56 0 1 438 0 6 432 6 5 180 0 17 117 chain 22795 chr17_KI270909v1_alt 325800 + 185532 185779 L1PA3long 6157 + 5910 6157 52672 247 chain 3414 chr17_KI270909v1_alt 325800 + 273077 273126 MLT2A1 477 + 200 250 95965 10 1 2 38 chain 392379 chr17_KI270909v1_alt 325800 + 273432 278228 HERVL-int 5654 + 0 4753 5279 701 0 1 135 0 1 13 24 3 23 48 0 198 0 1 1221 0 3 18 0 1 141 12 4 263 0 3 770 0 1 56 0 1 438 0 6 432 6 5 180 0 17 117 chain 22795 chr17_KI270909v1_alt 325800 + 287095 287342 L1PA3long 6157 + 5910 6157 52671 247 chain 116022 chr17_KI270908v1_alt 1423190 + 38421 40070 L1PB2 3958 + 2200 3838 16229 21 12 16 242 1 3 6 17 0 292 1 5 106 0 1 29 0 3 378 0 1 4 2 0 51 0 3 12 7 0 66 2 0 12 4 0 19 0 8 25 66 65 110 2 1 69 9 7 20 1 0 63 chain 10710 chr17_KI270908v1_alt 1423190 + 84360 84517 MER115 684 + 502 662 69029 82 0 1 44 11 12 14 0 1 6 chain 9421 chr17_KI270908v1_alt 1423190 + 115102 115302 L1PB1 5432 + 5238 5412 71651 41 2 1 16 8 0 15 9 0 15 25 20 24 1 0 22 1 0 12 1 0 8 chain 6122 chr17_KI270908v1_alt 1423190 + 270610 270744 MER58B 340 + 174 330 80647 19 6 11 30 3 2 16 23 41 37 chain 49656 chr17_KI270908v1_alt 1423190 + 278763 279347 LTR10C 591 + 0 591 29698 31 0 1 10 0 4 462 0 2 81 chain 2934 chr17_KI270908v1_alt 1423190 + 279757 279793 L1MB7 1623 + 1393 1428 100546 30 1 0 5 chain 9477 chr17_KI270908v1_alt 1423190 + 283309 283418 L1PA8A 6298 + 6178 6287 71538 109 chain 22099 chr17_KI270908v1_alt 1423190 + 305674 305943 AluSg7 307 + 29 299 53697 102 1 2 166 chain 26427 chr17_KI270908v1_alt 1423190 + 333788 334095 AluY 311 + 3 311 47088 129 0 1 178 chain 3296 chr17_KI270908v1_alt 1423190 + 475434 475545 LTR12F 595 + 215 282 97054 25 43 0 11 9 9 6 1 0 16 chain 9044 chr17_KI270908v1_alt 1423190 + 540635 540736 MER9a2 513 + 363 464 72462 101 chain 2947 chr17_KI270908v1_alt 1423190 + 654171 654202 U2 167 + 0 31 100411 31 chain 28270 chr17_KI270908v1_alt 1423190 + 708259 708705 L1MA3 4352 + 3781 4217 44453 194 0 2 54 0 9 41 69 48 88 chain 3203 chr17_KI270908v1_alt 1423190 + 931471 931507 tRNA-Tyr-TAC 38 + 1 37 97871 36 chain 33152 chr17_KI270908v1_alt 1423190 + 952744 953172 MLT2A1 477 + 0 476 39403 169 4 1 9 0 1 20 0 6 178 12 56 36 chain 3752 chr17_KI270908v1_alt 1423190 + 958397 958463 MLT1A0 366 + 25 92 93226 21 12 13 33 chain 11590 chr17_KI270908v1_alt 1423190 + 960925 961124 L1PB1 5432 + 4996 5185 67588 107 1 2 10 3 0 19 1 0 13 1 0 9 2 0 3 2 0 7 3 1 18 chain 22823 chr17_KI270908v1_alt 1423190 + 1085361 1085649 AluSc 308 + 7 297 52627 71 2 1 62 1 4 152 chain 30443 chr17_KI270908v1_alt 1423190 + 1225145 1225557 MER1A 529 + 0 429 41634 16 9 21 43 8 12 6 0 1 330 chain 17401 chr17_KI270908v1_alt 1423190 + 1280109 1280429 Tigger4b 360 + 3 338 59352 59 15 16 30 42 37 26 5 6 42 0 2 72 1 17 28 chain 23524 chr17_KI270908v1_alt 1423190 + 1299928 1300199 AluYc3 301 + 8 280 51546 105 1 2 165 chain 27424 chr17_KI270908v1_alt 1423190 + 1324118 1324548 LTR12F 595 + 11 595 45670 80 5 18 5 1 0 32 6 94 46 0 64 34 9 1 7 11 0 100 0 9 94 chain 3987 chr17_KI270908v1_alt 1423190 + 1418297 1418509 L1MB7 1623 + 1307 1491 91532 16 1 0 4 61 57 28 62 40 23 4 3 13 chain 3402 chr18_KI270911v1_alt 157710 + 150307 150343 L1P3 4156 + 3461 3497 96040 36 chain 9477 chr19_GL949747v2_alt 729520 + 1213 1389 MER5A 189 + 11 168 71533 89 4 0 12 43 28 28 chain 82486 chr19_GL949747v2_alt 729520 + 11133 12088 LTR13A 966 + 0 953 21134 76 0 4 582 6 0 291 chain 8842 chr19_GL949747v2_alt 729520 + 126281 126379 BC200 147 + 5 103 72885 98 chain 15875 chr19_GL949747v2_alt 729520 + 282145 282500 L1PB1 5432 + 5107 5427 61188 8 5 0 21 10 8 14 4 0 10 2 0 51 1 0 12 6 5 44 1 0 16 1 0 4 2 0 11 8 0 13 27 22 24 1 0 20 6 5 9 1 0 5 0 2 11 2 0 5 chain 4312 chr19_GL949747v2_alt 729520 + 296478 296524 L1PREC2 3366 + 1122 1168 89432 46 chain 16419 chr19_GL949747v2_alt 729520 + 310077 310431 THE1B 368 + 5 368 60489 96 22 16 14 7 11 35 70 82 47 14 13 49 chain 5739 chr19_GL949747v2_alt 729520 + 330947 331017 L1P4e 1373 + 24 94 82184 70 chain 24223 chr19_GL949747v2_alt 729520 + 385779 386075 AluSp 311 + 0 294 50453 36 1 0 89 1 0 169 chain 5445 chr19_GL949747v2_alt 729520 + 494322 494394 MER2B 336 + 176 248 83484 72 chain 67500 chr19_GL949747v2_alt 729520 + 588937 589866 LTR5_Hs 974 + 0 974 24576 168 11 20 271 0 4 12 0 5 146 10 9 23 1 2 9 8 10 13 0 2 82 7 7 34 5 6 9 0 22 120 chain 24493 chr19_GL949747v2_alt 729520 + 597954 599447 MER41A 554 + 0 387 50039 14 0 1 80 249 0 25 1 4 46 891 29 158 3 4 26 chain 19494 chr19_GL949747v2_alt 729520 + 622399 622638 AluSp 311 + 58 297 57036 239 chain 20976 chr19_GL949747v2_alt 729520 + 623805 624065 AluSc 308 + 28 297 55162 32 0 8 40 2 3 186 chain 16137 chr19_GL949747v2_alt 729520 + 661995 662260 AluSc 308 + 20 298 60840 44 2 0 114 1 33 26 33 23 24 7 0 14 chain 55656 chr19_GL949747v2_alt 729520 + 667627 668275 L1PA10 4194 + 3502 4150 27681 584 0 3 27 3 0 34 chain 3384 chr19_GL949747v2_alt 729520 + 681292 681345 L1PB3 3668 + 3511 3562 96245 17 3 1 33 chain 83380 chr19_GL949747v2_alt 729520 + 704891 705891 LTR5A 1029 + 0 1029 20946 13 0 4 116 1 14 621 15 21 156 0 6 78 chain 86240 chr22_KB663609v1_alt 74013 + 17511 18580 MER11B 1079 + 0 1064 20378 220 0 5 34 3 0 156 1 0 145 36 35 177 8 2 110 4 5 175 chain 29291 chr22_KB663609v1_alt 74013 + 35860 36176 AluYb8 318 + 0 314 42908 132 2 0 182 chain 18777 chr22_KB663609v1_alt 74013 + 73346 73666 LTR12C 1709 + 650 919 57815 56 41 0 43 18 9 79 1 0 82 chain 28387 chrX_KI270913v1_alt 274009 + 56051 56359 AluY 311 + 3 311 44289 308 chain 7568 chrX_KI270913v1_alt 274009 + 81855 82008 THE1B 368 + 153 307 75937 16 31 30 15 0 4 14 1 0 6 7 6 63 chain 51553 chrX_KI270913v1_alt 274009 + 106888 107485 L1PA3long 6157 + 5516 6142 29020 395 0 5 131 0 24 71 chain 21532 chrX_KI270913v1_alt 274009 + 127061 127714 L1PA7 6471 + 6041 6349 54467 24 345 0 284 chain 50083 chrX_KI270913v1_alt 274009 + 183550 184147 L1PA7 6471 + 5871 6470 29529 147 0 1 302 5 6 143 chain 65736 chrX_KI270913v1_alt 274009 + 192777 193573 L1PA7 6471 + 5593 6391 25023 21 0 2 14 0 1 71 0 1 7 2 0 73 2 3 534 1 0 71 chain 19975 chr19_KI270914v1_alt 205194 + 1114 1385 AluSp 311 + 9 284 56427 68 0 6 45 1 0 132 10 9 15 chain 8608 chr19_KI270915v1_alt 170665 + 20 116 U6 107 + 9 105 73432 96 chain 212554 chr19_KI270915v1_alt 170665 + 3865 6199 L1PA3long 6157 + 3823 6157 9250 2334 chain 19975 chr19_KI270915v1_alt 170665 + 11218 11489 AluSp 311 + 9 284 56426 68 0 6 45 1 0 132 10 9 15 chain 8608 chr19_KI270916v1_alt 184516 + 262 358 U6 107 + 9 105 73431 96 chain 212004 chr19_KI270916v1_alt 184516 + 4107 6441 L1PA3long 6157 + 3823 6157 9285 2334 chain 19975 chr19_KI270916v1_alt 184516 + 11460 11731 AluSp 311 + 9 284 56425 68 0 6 45 1 0 132 10 9 15 chain 8608 chr19_KI270919v1_alt 170701 + 21 117 U6 107 + 9 105 73430 96 chain 212218 chr19_KI270919v1_alt 170701 + 3866 6200 L1PA3long 6157 + 3823 6157 9267 2334 chain 19975 chr19_KI270919v1_alt 170701 + 11220 11491 AluSp 311 + 9 284 56424 68 0 6 45 1 0 132 10 9 15 chain 5445 chr19_KI270921v1_alt 282224 + 219287 219359 MER2B 336 + 176 248 83480 72 chain 84098 chr3_KI270924v1_alt 166540 + 66951 67945 LTR5A 1029 + 3 1029 20781 56 0 2 37 0 2 27 0 14 9 7 20 215 0 1 643 chain 4035 chr3_KI270924v1_alt 166540 + 79157 79201 MER50 708 + 526 570 91197 44 chain 79186 chr3_KI270924v1_alt 166540 + 99666 100917 L1PA7 6471 + 5508 6461 21806 108 1 5 50 0 5 24 1 4 306 310 0 451 chain 35598 chr4_KI270925v1_alt 555799 + 31768 32175 L1PA4 6152 + 4596 5005 37660 191 0 2 216 chain 32642 chr4_KI270925v1_alt 555799 + 40731 41164 THE1D-int 1627 + 0 536 39818 333 1 0 6 5 109 88 chain 52661 chr4_KI270925v1_alt 555799 + 41844 42409 L1PA2 6032 + 5465 6030 28679 565 chain 8883 chr4_KI270925v1_alt 555799 + 292276 292486 Tigger3a 397 + 139 365 72811 9 0 10 62 85 91 54 chain 49380 chr4_KI270925v1_alt 555799 + 298558 299227 PABL_B 668 + 0 668 29807 73 15 16 146 1 0 39 5 4 72 1 0 162 1 2 154 chain 27423 chr4_KI270925v1_alt 555799 + 352215 352508 AluYb8 318 + 0 291 45674 132 2 0 159 chain 38748 chr4_KI270925v1_alt 555799 + 367342 367805 LTR2 463 + 0 463 35527 463 chain 80639 chr4_KI270925v1_alt 555799 + 446859 447732 L1PA4 6152 + 5006 5880 21504 811 0 1 62 chain 122716 chr4_KI270925v1_alt 555799 + 526230 527588 L1PA4 6152 + 4521 5880 15079 344 0 1 1014 chain 5243 chr4_KI270925v1_alt 555799 + 538605 538745 Ricksha_c 1012 + 91 216 84485 39 33 29 9 1 0 7 5 0 27 7 2 12 chain 6160 chr6_GL000252v2_alt 4604811 + 13341 13414 tRNA-Lys-AAA 73 + 0 73 80494 73 chain 6258 chr6_GL000252v2_alt 4604811 + 29986 30055 tRNA-Phe-TTY 73 + 0 69 80141 69 chain 43648 chr6_GL000252v2_alt 4604811 + 42201 42813 LTR71B 605 + 0 595 32354 127 61 52 173 3 1 163 6 0 79 chain 2947 chr6_GL000252v2_alt 4604811 + 62470 62501 U2 167 + 0 31 100397 31 chain 193658 chr6_GL000252v2_alt 4604811 + 95584 97842 L1PA6 6164 + 3939 6162 9943 423 0 4 283 1 0 679 10 0 429 24 0 396 4 0 9 chain 405793 chr6_GL000252v2_alt 4604811 + 115822 120510 L1PA5 6144 + 1436 6129 5074 664 0 3 67 2 0 42 1 0 101 9 7 876 1 0 1145 0 4 415 0 1 967 0 1 190 0 1 72 5 6 131 chain 8544 chr6_GL000252v2_alt 4604811 + 123478 123581 MER57A1 433 + 325 428 73581 103 chain 2737 chr6_GL000252v2_alt 4604811 + 130658 130736 MER39 703 + 449 528 102068 17 35 36 26 chain 6975 chr6_GL000252v2_alt 4604811 + 247801 247873 tRNA-Glu-GAG_ 72 + 0 72 77695 72 chain 20433 chr6_GL000252v2_alt 4604811 + 253453 253688 AluSp 311 + 5 239 55849 106 2 1 127 chain 7808 chr6_GL000252v2_alt 4604811 + 254604 254686 tRNA-Leu-CTY 82 + 0 82 75356 82 chain 8214 chr6_GL000252v2_alt 4604811 + 275987 276221 L1MC1 2226 + 1918 2098 74372 61 18 13 47 93 44 15 chain 17255 chr6_GL000252v2_alt 4604811 + 281160 281465 LTR12C 1709 + 778 1086 59514 51 0 81 133 78 0 43 chain 7108 chr6_GL000252v2_alt 4604811 + 312115 312319 L1MA10 1535 + 1329 1501 77233 59 42 25 24 51 36 28 chain 105844 chr6_GL000252v2_alt 4604811 + 334062 335913 L1PB1 5432 + 3934 5414 17584 385 307 0 20 7 0 78 0 1 87 0 1 16 7 11 18 2 1 14 9 0 19 1 0 41 3 0 143 1 0 28 0 1 7 16 16 17 0 1 264 1 2 11 21 0 22 1 0 9 1 0 11 15 9 52 1 0 10 11 10 42 1 0 17 15 0 29 7 4 15 2 0 24 1 0 22 0 3 9 1 0 10 chain 20632 chr6_GL000252v2_alt 4604811 + 344375 344662 L1PA7 6471 + 6177 6466 55588 96 0 1 34 15 16 122 8 8 12 chain 30098 chr6_GL000252v2_alt 4604811 + 421860 422219 L1P1 4361 + 3334 3691 41954 349 2 0 8 chain 4048 chr6_GL000252v2_alt 4604811 + 429225 429268 L1PA2 6032 + 5725 5768 91093 43 chain 39133 chr6_GL000252v2_alt 4604811 + 452662 453144 MER9a3 513 + 0 485 35265 18 0 2 90 0 1 142 6 5 175 0 1 51 chain 3371 chr6_GL000252v2_alt 4604811 + 457737 457774 L1PA15 4387 + 2264 2301 96384 37 chain 3383 chr6_GL000252v2_alt 4604811 + 467456 467491 MER52A 1651 + 795 830 96270 35 chain 75988 chr6_GL000252v2_alt 4604811 + 482906 483992 THE1C-int 1605 + 497 1598 22579 176 94 88 24 3 11 151 9 8 218 1 11 110 0 3 97 0 1 106 0 1 37 1 0 59 chain 9622 chr6_GL000252v2_alt 4604811 + 499112 499218 L1PA2 6032 + 5926 6032 71216 106 chain 28152 chr6_GL000252v2_alt 4604811 + 519399 519857 MER4A1 472 + 0 472 44631 14 9 11 16 0 7 132 51 52 159 10 14 67 chain 30647 chr6_GL000252v2_alt 4604811 + 528606 529104 LTR19A 502 + 0 502 41426 71 0 1 61 0 1 52 38 1 15 0 36 73 1 2 63 45 46 38 0 1 41 chain 541133 chr6_GL000252v2_alt 4604811 + 539060 545208 L1PA4 6152 + 2 6151 1268 125 14 0 15 10 24 252 0 3 6 4 1 14 6 7 795 7 6 1097 0 1 4 1 0 1692 0 1 2106 chain 183425 chr6_GL000252v2_alt 4604811 + 547786 550002 L1PA7 6471 + 4233 6467 10417 443 0 4 275 1 0 367 0 1 299 0 2 53 8 0 378 0 4 134 2 3 123 1 16 132 chain 4686 chr6_GL000252v2_alt 4604811 + 561754 561809 MER52D 1964 + 1150 1205 87350 55 chain 32712 chr6_GL000252v2_alt 4604811 + 562063 562508 LTR7 482 + 0 477 39748 101 15 14 110 4 3 39 0 31 21 0 2 98 13 14 44 chain 90547 chr6_GL000252v2_alt 4604811 + 564686 565696 L1PA4 6152 + 4169 5186 19589 179 0 4 57 0 1 380 0 2 394 chain 26512 chr6_GL000252v2_alt 4604811 + 606311 606673 THE1D 372 + 0 372 46964 35 2 0 33 1 11 111 0 3 125 0 1 21 2 0 32 chain 170713 chr6_GL000252v2_alt 4604811 + 672071 674083 L1PA7 6471 + 4459 6470 11069 1161 1 4 379 0 2 217 7 1 247 chain 2947 chr6_GL000252v2_alt 4604811 + 720427 720458 U2 167 + 0 31 100396 31 chain 53120 chr6_GL000252v2_alt 4604811 + 739598 740194 L1PA4 6152 + 5543 6138 28529 349 1 0 246 chain 3755 chr6_GL000252v2_alt 4604811 + 805315 805359 MER81 114 + 1 45 93182 44 chain 64720 chr6_GL000252v2_alt 4604811 + 823756 824532 LTR17 781 + 0 781 25259 256 0 1 70 0 1 101 1 2 83 0 1 56 0 1 209 chain 3823 chr6_GL000252v2_alt 4604811 + 858153 858228 LTR39 781 + 464 539 92693 31 7 8 23 4 3 10 chain 4874 chr6_GL000252v2_alt 4604811 + 860892 860951 Tigger2b_Pri 1066 + 52 112 86301 22 0 1 37 chain 4701 chr6_GL000252v2_alt 4604811 + 880313 880383 L1MC1 2226 + 2129 2196 87263 6 1 0 17 1 0 32 1 0 12 chain 4440 chr6_GL000252v2_alt 4604811 + 917710 917782 MER45C 884 + 80 153 88659 53 7 8 12 chain 22951 chr6_GL000252v2_alt 4604811 + 945147 945426 AluSp 311 + 0 284 52441 19 0 1 83 0 4 177 chain 11740 chr6_GL000252v2_alt 4604811 + 956695 957026 L1PB1 5432 + 5120 5424 67335 18 1 0 9 16 11 9 2 0 52 1 0 18 24 23 20 1 0 16 32 21 10 4 5 14 2 0 6 10 10 8 1 0 21 1 0 10 1 0 19 1 0 4 chain 8315 chr6_GL000252v2_alt 4604811 + 1013439 1013540 HY3 101 + 0 101 74125 101 chain 57263 chr6_GL000252v2_alt 4604811 + 1037802 1038608 Charlie9 784 + 0 780 27173 33 1 0 10 0 1 110 1 0 41 0 1 256 10 6 4 1 0 8 1 0 4 1 0 4 1 0 6 5 0 5 1 0 4 1 0 15 13 0 184 0 2 86 chain 6716 chr6_GL000252v2_alt 4604811 + 1038680 1038769 L1PA10 4194 + 4064 4150 78584 53 3 0 33 chain 496303 chr6_GL000252v2_alt 4604811 + 1042772 1048808 L1PA6 6164 + 13 6153 3255 99 1 0 4 16 3 82 0 1 289 1 2 16 2 1 116 0 1 301 0 25 222 4 13 1144 1 2 855 0 1 79 0 8 28 0 1 645 1 2 415 0 4 110 0 2 423 11 9 131 5 7 202 0 60 12 0 1 502 0 1 110 0 2 209 chain 55503 chr6_GL000252v2_alt 4604811 + 1049027 1049855 Charlie9 784 + 0 784 27717 32 0 1 119 1 0 35 13 7 120 10 9 134 15 4 9 1 0 8 1 0 6 5 0 8 3 1 10 22 5 276 chain 4778 chr6_GL000252v2_alt 4604811 + 1049928 1050024 L1PA10 4194 + 4069 4159 86806 7 3 0 27 6 7 7 3 0 33 1 0 9 chain 3063 chr6_GL000252v2_alt 4604811 + 1081218 1081262 LTR16B2 458 + 159 204 99199 11 1 2 32 chain 58152 chr6_GL000252v2_alt 4604811 + 1083890 1084715 Charlie9 784 + 0 784 26921 32 0 1 150 16 0 19 9 10 178 0 8 58 8 0 5 3 0 9 1 0 7 2 0 7 1 0 9 1 0 10 20 5 29 1 0 179 3 0 68 chain 6917 chr6_GL000252v2_alt 4604811 + 1095273 1095373 Charlie12 129 + 30 129 77899 29 6 7 31 1 0 5 1 0 27 chain 36071 chr6_GL000252v2_alt 4604811 + 1108191 1108741 LTR10F 562 + 0 535 37361 111 0 28 89 0 3 31 83 37 182 0 1 16 3 2 35 chain 5775 chr6_GL000252v2_alt 4604811 + 1108422 1108493 LTR10F 562 + 119 190 78471 71 chain 31508 chr6_GL000252v2_alt 4604811 + 1139380 1139857 Charlie9 784 + 0 457 40729 23 0 1 7 0 1 44 0 1 75 1 0 35 11 5 136 2 1 69 28 13 46 chain 51947 chr6_GL000252v2_alt 4604811 + 1176974 1177807 Charlie9 784 + 0 784 28885 30 1 2 122 1 0 12 41 28 78 2 1 5 0 1 25 26 30 123 6 0 4 4 0 9 1 0 6 3 1 7 5 0 8 3 1 10 27 5 197 0 2 77 chain 3049 chr6_GL000252v2_alt 4604811 + 1188869 1188904 MER30B 195 + 16 51 99313 35 chain 34398 chr6_GL000252v2_alt 4604811 + 1192576 1193035 Charlie9 784 + 0 453 38429 24 0 1 6 0 1 122 1 0 12 0 1 20 14 7 133 1 0 126 chain 3049 chr6_GL000252v2_alt 4604811 + 1202370 1202405 MER30B 195 + 16 51 99312 35 chain 106027 chr6_GL000252v2_alt 4604811 + 1218480 1219798 L1PA7 6471 + 5179 6461 17559 422 0 5 8 1 0 338 9 1 29 0 1 153 0 1 62 39 3 41 0 2 216 chain 147893 chr6_GL000252v2_alt 4604811 + 1234409 1236043 L1PA3long 6157 + 4508 6142 12490 1634 chain 166861 chr6_GL000252v2_alt 4604811 + 1281204 1283762 L1PB1 5432 + 3093 5360 11281 170 0 1 275 0 3 194 8 1 20 1 0 205 5 6 347 0 1 124 1 0 64 1 2 120 4 0 219 276 0 66 7 6 41 10 3 53 0 2 81 0 24 17 1 0 8 1 0 12 5 1 9 11 9 43 2 1 15 1 0 44 1 0 16 1 0 6 59 44 14 chain 22192 chr6_GL000252v2_alt 4604811 + 1364202 1364493 AluSq 315 + 8 301 53573 119 17 19 155 chain 3918 chr6_GL000252v2_alt 4604811 + 1379254 1379308 MER53 195 - 12 65 91988 6 1 0 47 chain 70311 chr6_GL000252v2_alt 4604811 + 1395796 1396634 L1PA7 6471 + 5617 6457 23916 152 0 1 537 8 9 141 chain 4035 chr6_GL000252v2_alt 4604811 + 1407172 1407301 MIR 256 + 54 195 91188 19 65 77 45 chain 25479 chr6_GL000252v2_alt 4604811 + 1417909 1418211 AluY 311 + 0 309 48513 50 0 7 252 chain 413894 chr6_GL000252v2_alt 4604811 + 1503841 1508613 L1PA5 6144 + 607 5511 4976 5 0 2 77 7 0 72 0 128 157 1 0 5 0 1 2110 1 0 342 1 2 174 0 1 658 0 4 27 0 2 919 0 1 28 0 1 188 chain 4719 chr6_GL000252v2_alt 4604811 + 1612377 1612434 MER20 218 + 98 155 87138 57 chain 126616 chr6_GL000252v2_alt 4604811 + 1641069 1642855 L1PB2 3958 + 1118 2874 14464 85 0 1 50 1 0 25 6 7 55 0 2 125 6 9 105 5 4 11 5 4 43 1 4 121 0 1 373 7 8 167 4 5 111 0 1 47 54 12 368 0 1 11 chain 98791 chr6_GL000252v2_alt 4604811 + 1662955 1664192 THE1A-int 1579 + 341 1579 18437 851 1 2 385 chain 79160 chr6_GL000252v2_alt 4604811 + 1667154 1668101 LTR13_ 950 + 0 950 21818 579 2 1 277 0 4 89 chain 70566 chr6_GL000252v2_alt 4604811 + 1668963 1669939 L1PREC2 3366 + 1287 2295 23853 23 1 0 194 0 11 309 19 22 5 3 0 16 3 4 16 2 0 5 1 3 230 0 8 113 0 1 6 0 12 30 chain 201453 chr6_GL000252v2_alt 4604811 + 1681213 1684255 L1PA11 4918 + 1644 4517 9663 153 1 0 15 5 2 306 0 4 136 1 5 48 0 1 204 0 3 214 4 7 375 1 8 11 32 155 42 1 5 62 1 5 105 2 0 152 320 0 34 1 0 89 5 6 384 0 1 152 5 0 65 2 1 13 12 11 51 7 21 18 4 0 9 chain 509688 chr6_GL000252v2_alt 4604811 + 1686139 1692272 L1PA6 6164 + 0 6159 2784 128 14 0 70 3 4 307 2 1 418 0 25 222 4 13 501 1 0 643 1 2 776 3 0 79 0 1 435 0 1 77 3 1 975 8 7 771 9 10 17 0 1 512 13 14 77 0 7 64 chain 38906 chr6_GL000252v2_alt 4604811 + 1727550 1728069 L1PBa 3878 + 891 1420 35422 63 4 8 22 1 6 97 0 1 4 3 2 277 3 4 45 chain 200723 chr6_GL000252v2_alt 4604811 + 1729741 1735391 L1PB1 5432 + 2253 5422 9699 183 2 3 11 3 2 46 1 2 322 2395 247 210 304 0 332 0 2 27 0 1 79 3 0 6 9 14 623 24 23 100 0 1 16 0 1 50 2 4 68 3 0 55 0 1 32 2 0 88 5 4 189 32 32 71 19 17 19 1 0 10 1 0 13 6 2 9 2 0 52 2 1 16 6 5 37 2 1 16 2 0 10 5 1 5 5 0 14 26 21 23 1 0 22 1 0 12 1 0 11 1 0 7 chain 131186 chr6_GL000252v2_alt 4604811 + 1730365 1731835 SVA_D 2077 + 42 2076 13906 570 1 0 87 0 40 26 0 40 111 6 397 70 0 94 599 chain 10465 chr6_GL000252v2_alt 4604811 + 1740912 1741165 L1PB1 5432 + 5023 5219 69478 75 58 10 6 1 0 24 8 6 14 5 1 9 4 2 49 chain 9482 chr6_GL000252v2_alt 4604811 + 1741166 1741402 L1PB1 5432 + 5219 5430 71516 18 2 1 42 1 0 16 4 0 15 9 0 15 9 6 11 18 16 9 3 2 23 1 0 11 1 0 14 1 0 8 1 0 4 chain 13441 chr6_GL000252v2_alt 4604811 + 1770129 1770303 MER4A1 472 + 0 177 64402 99 1 3 29 0 1 45 chain 92037 chr6_GL000252v2_alt 4604811 + 1773621 1775026 LTR12D 1347 + 0 1347 19336 297 7 36 36 11 12 10 2 5 140 74 25 6 2 0 132 14 7 156 7 4 74 1 0 80 4 0 3 23 0 26 1 0 34 1 0 264 chain 2749 chr6_GL000252v2_alt 4604811 + 1774124 1774198 LTR12D 1347 + 567 678 80345 13 1 38 60 chain 499737 chr6_GL000252v2_alt 4604811 + 1776646 1782798 L1PA6 6164 + 13 6162 3134 369 38 32 4 0 1 30 19 0 7 0 4 107 8 7 213 0 17 378 0 3 668 0 1 177 6 0 153 7 9 141 2 1 16 32 22 469 1 3 512 0 1 231 76 76 49 0 1 229 1 0 48 0 2 514 0 2 384 1 2 335 0 1 83 1 0 367 0 5 313 0 8 8 2 1 6 7 0 135 1 0 4 chain 8341 chr6_GL000252v2_alt 4604811 + 1795079 1795190 L1MA7 2200 + 1520 1630 74054 33 1 0 77 chain 20517 chr6_GL000252v2_alt 4604811 + 1845209 1845445 AluY 311 + 62 299 55764 70 0 1 166 chain 10228 chr6_GL000252v2_alt 4604811 + 2099104 2099336 MER49 923 + 597 828 69949 53 23 25 5 2 0 75 53 52 21 chain 6615 chr6_GL000252v2_alt 4604811 + 2099604 2099854 MER61C 433 + 32 354 78921 8 2 0 25 21 111 13 0 1 5 19 15 23 62 64 12 14 0 6 1 0 39 chain 19529 chr6_GL000252v2_alt 4604811 + 2120522 2120766 7SK 245 + 0 245 56987 79 1 2 164 chain 72555 chr6_GL000252v2_alt 4604811 + 2125080 2126149 MER11A 1151 + 0 1137 23420 77 0 8 116 0 3 26 0 4 60 0 11 11 37 0 164 17 20 32 0 12 138 6 9 11 3 4 37 0 4 69 6 33 13 0 32 97 8 7 87 1 0 27 1 0 25 chain 40613 chr6_GL000252v2_alt 4604811 + 2130184 2131032 MER41A 554 + 28 554 34211 285 326 0 94 1 5 142 chain 382117 chr6_GL000252v2_alt 4604811 + 2222684 2227730 HERVL-int 5654 + 885 5654 5445 301 4 14 126 12 13 385 0 2 149 0 3 150 320 3 110 0 4 125 5 4 291 0 1 349 0 3 511 8 7 27 0 2 6 3 1 197 9 10 132 4 5 23 15 18 432 18 23 112 6 7 29 0 2 89 0 3 670 0 1 105 5 6 318 chain 29234 chr6_GL000252v2_alt 4604811 + 2227730 2228139 MLT2A1 477 + 0 477 42993 146 0 1 21 5 2 9 0 1 24 0 1 54 0 28 97 19 59 34 chain 108907 chr6_GL000252v2_alt 4604811 + 2256611 2257914 LTR12C 1709 + 0 1709 17194 260 1 26 364 0 278 184 1 0 5 3 1 106 0 4 187 0 102 192 chain 8964 chr6_GL000252v2_alt 4604811 + 2273835 2273950 LTR12C 1709 + 773 928 51522 64 1 41 50 chain 24966 chr6_GL000252v2_alt 4604811 + 2273950 2274276 LTR12C 1709 + 650 991 49338 187 1 0 72 3 18 4 0 1 59 chain 144797 chr6_GL000252v2_alt 4604811 + 2277122 2278831 LTR12C 1709 + 0 1709 12706 262 0 1 574 1 0 274 1 0 6 5 3 104 0 4 276 1 0 205 chain 23571 chr6_GL000252v2_alt 4604811 + 2312637 2312978 THE1A 353 + 0 353 51473 62 37 49 242 chain 5411 chr6_GL000252v2_alt 4604811 + 2342410 2342474 U6 107 + 37 101 83653 64 chain 16314 chr6_GL000252v2_alt 4604811 + 2356969 2357186 MER50 708 + 473 701 60612 11 1 0 62 0 9 55 2 0 5 0 5 81 chain 4824 chr6_GL000252v2_alt 4604811 + 2426460 2426547 MER50B 698 + 483 568 86582 36 0 1 5 11 10 7 2 0 26 chain 131135 chr6_GL000252v2_alt 4604811 + 2454614 2456158 LTR12C 1709 + 1 1709 13911 690 0 159 65 0 2 195 1 0 5 7 5 102 0 4 118 0 2 361 chain 47533 chr6_GL000252v2_alt 4604811 + 2470489 2471105 LTR43 600 + 0 600 30465 294 16 0 306 chain 6749 chr6_GL000252v2_alt 4604811 + 2473531 2473614 L1MC 810 + 638 721 78476 83 chain 42471 chr6_GL000252v2_alt 4604811 + 2474432 2474985 MER41A 554 + 0 554 33078 42 0 15 7 16 1 332 1 0 4 0 1 59 0 1 92 chain 24407 chr6_GL000252v2_alt 4604811 + 2482560 2482995 MLT2A2 560 + 0 560 50160 178 2 0 15 29 34 75 2 111 45 0 5 9 57 65 23 chain 23177 chr6_GL000252v2_alt 4604811 + 2488342 2488630 AluSp 311 + 6 292 52108 275 3 1 10 chain 54827 chr6_GL000252v2_alt 4604811 + 2533193 2537868 L1PA8A 6298 + 5455 6290 27937 34 7 8 77 3854 0 238 2 14 124 0 1 24 1 2 205 3 1 8 3 4 4 1 0 46 3 4 41 chain 2948 chr6_GL000252v2_alt 4604811 + 2540472 2540540 L1PREC2 3366 + 1229 1299 100383 18 1 2 18 15 16 16 chain 9186 chr6_GL000252v2_alt 4604811 + 2572624 2572750 L1PA13 3608 + 3328 3448 72152 7 1 0 56 1 0 5 2 0 45 2 0 7 chain 63049 chr6_GL000252v2_alt 4604811 + 2576311 2577052 SVA_B 1603 + 832 1603 25614 12 0 36 11 1 0 35 5 0 42 5 0 6 0 1 34 1 0 43 0 1 137 0 4 409 chain 96181 chr6_GL000252v2_alt 4604811 + 2589926 2591074 L1PA5 6144 + 5011 6144 18755 160 0 1 46 22 4 110 1 2 375 0 1 434 chain 25044 chr6_GL000252v2_alt 4604811 + 2757879 2758261 LTR3A 482 + 27 420 49201 125 14 19 108 7 8 20 5 6 67 5 7 16 0 2 15 chain 18408 chr6_GL000252v2_alt 4604811 + 2769918 2770277 L1MA8 2339 + 1847 2188 58229 85 5 1 25 4 5 46 1 0 36 1 6 18 70 50 38 2 3 28 chain 11268 chr6_GL000252v2_alt 4604811 + 3019110 3019253 LTR7B 505 + 0 164 68134 108 0 10 21 0 11 14 chain 3085 chr6_GL000252v2_alt 4604811 + 3100452 3100487 LTR12C 1709 + 683 718 98922 35 chain 9226 chr6_GL000252v2_alt 4604811 + 3141447 3141675 L1MB3 1562 + 1260 1465 72067 17 0 2 72 1 0 16 86 64 7 2 0 27 chain 3468 chr6_GL000252v2_alt 4604811 + 3142747 3142787 MER44B 551 + 384 424 95468 40 chain 5414 chr6_GL000252v2_alt 4604811 + 3162010 3162088 MLT2C2 476 + 182 263 83636 28 3 6 47 chain 46341 chr6_GL000252v2_alt 4604811 + 3506684 3507195 L1PA4 6152 + 4485 5015 30905 315 0 19 196 chain 279746 chr6_GL000252v2_alt 4604811 + 3512333 3516598 L1PB1 5432 + 1743 5427 7428 679 0 4 73 0 1 8 0 5 64 0 5 248 0 4 8 3 0 157 9 1 7 5 0 187 0 2 232 1 6 51 0 1 6 0 1 121 0 1 4 2 1 86 1 0 17 30 8 18 1 0 681 0 1 46 27 32 115 3 0 158 564 16 287 20 21 9 3 0 23 1 0 9 1 0 9 9 5 7 2 0 9 0 3 40 2 1 15 1 0 43 0 8 9 14 1 30 2 0 5 1 0 14 2 0 24 1 0 21 4 3 10 1 0 14 1 0 5 1 0 4 chain 23597 chr6_GL000252v2_alt 4604811 + 3518408 3518783 MSTA 426 + 0 426 51438 104 26 54 78 32 29 33 0 26 102 chain 4437 chr6_GL000252v2_alt 4604811 + 3518783 3518834 MSTA-int 1630 + 0 51 88694 51 chain 392267 chr6_GL000252v2_alt 4604811 + 3520963 3526229 L1PA8 5853 + 50 5853 5282 15 8 6 11 1 0 13 52 13 60 0 3 134 0 4 153 8 9 158 307 0 25 8 5 20 0 1 337 1 0 128 0 1 871 2 1 62 0 1 160 0 863 105 8 6 518 0 3 300 0 1 20 0 2 23 0 6 282 1 0 317 9 17 85 3 0 99 2 1 204 0 1 397 0 10 59 3 2 46 2 0 54 1 0 5 1 2 10 1 0 9 9 8 44 2 1 19 4 3 90 chain 45618 chr6_GL000252v2_alt 4604811 + 3546451 3547046 PABL_A 660 + 0 620 31255 96 0 15 13 0 2 14 0 1 78 1 0 63 3 0 11 2 13 314 chain 26576 chr6_GL000252v2_alt 4604811 + 3549805 3550084 AluYa5 310 + 16 295 46869 279 chain 33447 chr6_GL000252v2_alt 4604811 + 3572908 3573358 LTR46 455 + 0 455 39134 30 9 10 147 1 5 212 1 0 14 0 1 36 chain 5223 chr6_GL000252v2_alt 4604811 + 3594000 3594064 U6 107 + 11 75 84576 64 chain 11790 chr6_GL000252v2_alt 4604811 + 3603460 3603645 MSTC 436 + 248 423 67232 63 23 19 37 6 0 56 chain 74235 chr6_GL000252v2_alt 4604811 + 3615428 3616395 HUERS-P2-int 2744 + 1566 2512 23025 350 4 5 327 33 13 107 1 2 4 1 0 66 1 0 48 5 4 20 chain 27991 chr6_GL000252v2_alt 4604811 + 3674437 3674825 L1PA8 5853 + 5451 5853 44881 113 1 0 44 6 4 49 0 20 6 3 1 22 0 1 22 11 10 17 1 0 93 chain 46550 chr6_GL000252v2_alt 4604811 + 3692728 3693317 THE1B-int 1605 + 13 630 30823 225 0 1 29 0 2 160 1 26 174 chain 20020 chr6_GL000252v2_alt 4604811 + 3694600 3694910 THE1B 368 + 8 328 56364 99 2 3 59 2 1 22 42 52 84 chain 32308 chr6_GL000252v2_alt 4604811 + 3697835 3698428 L1PA15 4387 + 3749 4326 40110 64 49 42 36 3 1 40 1 0 107 0 1 60 6 11 14 6 5 55 1 0 21 4 0 11 1 0 39 34 31 27 3 1 11 chain 27345 chr6_GL000252v2_alt 4604811 + 3771978 3772304 LTR14A 344 + 5 344 45770 59 0 11 30 0 2 237 chain 5263 chr6_GL000252v2_alt 4604811 + 3774244 3774307 HERVK14-int 1672 + 1603 1665 84375 56 1 0 6 chain 28712 chr6_GL000252v2_alt 4604811 + 3776866 3777204 LTR14A 344 + 0 344 43776 10 0 1 21 1 0 73 0 2 56 0 4 177 chain 15902 chr6_GL000252v2_alt 4604811 + 3802447 3802712 MER51A 677 + 0 234 61155 42 4 2 14 4 1 117 17 0 24 13 3 21 0 1 9 chain 9332 chr6_GL000252v2_alt 4604811 + 3807707 3807906 HERV9-int 5642 + 5476 5642 71853 23 2 0 25 2 1 60 1 0 13 28 5 17 11 5 17 chain 113513 chr6_GL000252v2_alt 4604811 + 3826431 3827688 L1PA3long 6157 + 4911 6157 16610 871 12 1 374 chain 90658 chr6_GL000252v2_alt 4604811 + 3831040 3832119 MER11C 1089 + 0 1073 19562 567 8 8 18 0 1 78 1 0 177 6 0 224 chain 57447 chr6_GL000252v2_alt 4604811 + 3854797 3855509 LTR30 714 + 2 714 27118 10 0 1 110 0 1 89 0 1 40 1 0 280 13 12 146 1 0 22 chain 566463 chr6_GL000252v2_alt 4604811 + 3859803 3865829 L1HS 6032 + 6 6032 51 6026 chain 120711 chr6_GL000252v2_alt 4604811 + 3891443 3892733 SVA_F 1814 + 335 1814 15405 553 1 0 8 0 191 100 1 0 627 chain 76939 chr6_GL000252v2_alt 4604811 + 3908740 3909739 LTR13 1007 + 0 1007 22334 68 6 0 201 0 2 110 18 19 53 0 1 176 1 0 50 0 12 120 5 6 157 2 0 32 chain 26612 chr6_GL000252v2_alt 4604811 + 3913857 3914197 THE1A 353 + 0 341 46815 110 1 0 167 0 2 62 chain 129821 chr6_GL000252v2_alt 4604811 + 3914224 3916114 THE1A-int 1579 + 17 1574 14065 49 0 1 435 0 1 73 0 1 693 337 0 74 0 1 229 chain 26950 chr6_GL000252v2_alt 4604811 + 3916119 3916473 THE1A 353 + 0 353 46338 111 10 9 233 chain 163160 chr6_GL000252v2_alt 4604811 + 3936287 3939612 L1MA1 4479 + 1697 4190 11537 174 0 2 59 1 0 10 27 29 22 0 1 16 4 3 65 0 6 77 4 0 119 1 2 142 9 10 103 28 1 69 5 3 48 11 10 79 8 12 12 3 1 14 0 1 17 1 0 16 1 0 138 1 0 27 2 0 9 0 1 165 2 0 39 0 14 38 1 0 12 5 0 28 0 1 24 5 0 29 9 29 6 0 7 6 7 0 106 16 14 32 0 2 59 0 1 107 1 0 25 2 0 16 809 0 74 1 0 17 2 0 13 1 0 88 9 5 89 0 1 36 1 0 29 2 0 44 1 0 11 23 15 13 chain 30878 chr6_GL000252v2_alt 4604811 + 3942895 3943367 MLT2A2 560 + 1 560 41245 5 1 0 117 1 0 46 12 11 12 50 129 81 0 11 147 chain 27900 chr6_GL000252v2_alt 4604811 + 3949868 3950335 L1PA8 5853 + 5422 5853 45039 142 1 0 45 3 1 35 38 8 29 27 25 12 0 1 20 2 1 19 10 9 84 chain 43204 chr6_GL000252v2_alt 4604811 + 3978585 3979116 L1PA7 6471 + 5759 6292 32642 83 5 6 106 6 7 331 chain 39053 chr6_GL000252v2_alt 4604811 + 4020331 4020861 MER9a1 513 + 0 513 35317 46 39 0 3 1 0 179 17 39 30 0 1 215 chain 56795 chr6_GL000252v2_alt 4604811 + 4026824 4027664 L1PA13 3608 + 218 1029 27327 73 2 0 115 34 32 7 2 0 15 27 8 12 2 1 19 3 1 15 2 0 11 6 5 9 0 1 87 2 1 364 0 2 33 chain 84473 chr6_GL000252v2_alt 4604811 + 4031987 4033153 L1PA11 4918 + 3401 4578 20717 257 4 3 35 1 0 443 0 1 119 0 1 50 0 4 17 1 5 59 6 5 7 2 0 68 19 16 17 4 0 11 6 22 13 1 0 13 2 0 11 chain 43401 chr6_GL000252v2_alt 4604811 + 4290272 4290811 THE1B-int 1605 + 0 587 32506 162 0 21 249 0 25 8 0 2 120 chain 258994 chr6_GL000252v2_alt 4604811 + 4295559 4300049 HERVK22-int 3844 + 15 3815 7997 23 3 0 194 0 1 289 0 1 45 1 4 107 4 5 16 2 0 372 4 1 113 9 1 341 0 1 426 8 12 82 1 0 330 9 7 275 0 1 335 2 3 48 1 0 66 5 4 6 1 0 16 6 5 32 1 0 21 2 0 39 15 10 45 159 119 19 10 7 28 826 198 87 17 16 49 chain 7851 chr6_GL000252v2_alt 4604811 + 4443099 4443189 HY4 93 + 0 90 75247 90 chain 5586 chr6_GL000252v2_alt 4604811 + 4458280 4458341 MER5A 189 + 30 91 82867 61 chain 16492 chr6_GL000252v2_alt 4604811 + 4504999 4505272 L1MA1 4479 + 3773 4041 60391 12 0 1 28 4 3 9 1 0 20 16 13 5 0 1 29 0 2 48 3 2 6 3 0 89 chain 136840 chr6_GL000252v2_alt 4604811 + 4589417 4591197 HERVH-int 3825 + 1637 3825 13354 49 3 30 65 20 5 304 1 6 32 1 4 360 30 31 296 0 367 57 11 22 132 0 1 113 0 8 306 chain 28413 chr6_GL000252v2_alt 4604811 + 4594921 4595308 LTR7B 505 + 0 505 44243 105 0 10 56 12 81 37 2 1 21 1 42 88 2 1 63 chain 23503 chr6_GL000252v2_alt 4604811 + 4598761 4599097 LTR14B 630 + 228 628 51589 46 7 53 17 7 18 85 0 4 89 0 3 85 chain 28369 chr8_KI270926v1_alt 229282 + 8478 8785 AluYb8 318 + 0 303 44317 126 4 0 177 chain 554144 chr8_KI270926v1_alt 229282 + 20773 26750 L1PA2 6032 + 51 6032 472 95 0 1 1864 0 3 4018 chain 456816 chr8_KI270926v1_alt 229282 + 124687 135692 L1PA7 6471 + 450 6412 4213 124 24 20 16 23 24 65 3 4 234 8 7 397 10 11 140 0 3 540 1 0 106 0 1 38 0 1 177 302 0 281 1 2 98 5 8 91 2 0 6 9 10 9 0 2 285 336 0 12 5 0 110 0 2 38 316 0 123 1 2 65 0 3 76 0 5 598 0 2 217 4125 10 261 0 1 439 0 2 288 13 11 206 1 0 15 9 13 51 0 1 108 7 10 378 0 1 117 0 1 65 0 1 30 chain 310658 chr8_KI270926v1_alt 229282 + 130153 133644 L1PA4 6152 + 2644 6141 6598 59 0 5 463 1 0 6 1 0 25 2 1 376 0 1 285 1 0 560 0 1 77 0 3 1635 chain 101672 chr8_KI270926v1_alt 229282 + 139385 140677 L1PA8 5853 + 4540 5846 18106 112 0 2 333 9 15 564 0 2 39 3 1 70 20 27 35 2 1 19 1 0 19 0 1 66 chain 40278 chr8_KI270926v1_alt 229282 + 213955 214405 LTR7 482 + 1 482 34457 241 0 31 209 chain 24992 chr8_KI270926v1_alt 229282 + 215513 215841 MER4A 717 + 342 666 49293 87 13 9 228 chain 3456 chr11_KI270927v1_alt 218612 + 20976 21012 MLT1A 405 + 249 285 95583 36 chain 9477 chr19_GL949748v2_alt 1064304 + 1213 1389 MER5A 189 + 11 168 71532 89 4 0 12 43 28 28 chain 82486 chr19_GL949748v2_alt 1064304 + 11133 12088 LTR13A 966 + 0 953 21133 76 0 4 582 6 0 291 chain 8842 chr19_GL949748v2_alt 1064304 + 126281 126379 BC200 147 + 5 103 72884 98 chain 67500 chr19_GL949748v2_alt 1064304 + 923721 924650 LTR5_Hs 974 + 0 974 24575 168 11 20 271 0 4 12 0 5 146 10 9 23 1 2 9 8 10 13 0 2 82 7 7 34 5 6 9 0 22 120 chain 24493 chr19_GL949748v2_alt 1064304 + 932738 934231 MER41A 554 + 0 387 50038 14 0 1 80 249 0 25 1 4 46 891 29 158 3 4 26 chain 19494 chr19_GL949748v2_alt 1064304 + 957183 957422 AluSp 311 + 58 297 57035 239 chain 20976 chr19_GL949748v2_alt 1064304 + 958589 958849 AluSc 308 + 28 297 55161 32 0 8 40 2 3 186 chain 16137 chr19_GL949748v2_alt 1064304 + 996779 997044 AluSc 308 + 20 298 60839 44 2 0 114 1 33 26 33 23 24 7 0 14 chain 57361 chr19_GL949748v2_alt 1064304 + 1002383 1003059 L1PA10 4194 + 3461 4150 27142 31 0 13 580 0 3 28 3 0 34 chain 3384 chr19_GL949748v2_alt 1064304 + 1016076 1016129 L1PB3 3668 + 3511 3562 96244 17 3 1 33 chain 83380 chr19_GL949748v2_alt 1064304 + 1039675 1040675 LTR5A 1029 + 0 1029 20945 13 0 4 116 1 14 621 15 21 156 0 6 78 chain 86240 chr22_KI270928v1_alt 176103 + 17511 18580 MER11B 1079 + 0 1064 20377 220 0 5 34 3 0 156 1 0 145 36 35 177 8 2 110 4 5 175 chain 29291 chr22_KI270928v1_alt 176103 + 35860 36176 AluYb8 318 + 0 314 42907 132 2 0 182 chain 16267 chr22_KI270928v1_alt 176103 + 61144 61528 LTR12C 1709 + 897 1196 60654 12 42 1 158 18 56 23 94 12 37 chain 31431 chr22_KI270928v1_alt 176103 + 69158 69702 L1M1 2793 + 2067 2573 40786 62 7 12 61 62 13 7 0 4 59 1 0 4 10 14 137 26 25 108 chain 3618 chr22_KI270928v1_alt 176103 + 143761 143803 LTR33 499 + 457 499 94287 42 chain 8608 chr19_KI270930v1_alt 200773 + 20 116 U6 107 + 9 105 73429 96 chain 212554 chr19_KI270930v1_alt 200773 + 3865 6199 L1PA3long 6157 + 3823 6157 9249 2334 chain 19975 chr19_KI270930v1_alt 200773 + 11217 11488 AluSp 311 + 9 284 56423 68 0 6 45 1 0 132 10 9 15 chain 8608 chr19_KI270931v1_alt 170148 + 377 473 U6 107 + 9 105 73428 96 chain 212432 chr19_KI270931v1_alt 170148 + 4222 6556 L1PA3long 6157 + 3823 6157 9258 2334 chain 19975 chr19_KI270931v1_alt 170148 + 11578 11849 AluSp 311 + 9 284 56422 68 0 6 45 1 0 132 10 9 15 chain 8608 chr19_KI270932v1_alt 215732 + 355 451 U6 107 + 9 105 73427 96 chain 212004 chr19_KI270932v1_alt 215732 + 4200 6534 L1PA3long 6157 + 3823 6157 9284 2334 chain 19975 chr19_KI270932v1_alt 215732 + 11553 11824 AluSp 311 + 9 284 56421 68 0 6 45 1 0 132 10 9 15 chain 8608 chr19_KI270933v1_alt 170537 + 20 116 U6 107 + 9 105 73426 96 chain 212432 chr19_KI270933v1_alt 170537 + 3865 6199 L1PA3long 6157 + 3823 6157 9257 2334 chain 19975 chr19_KI270933v1_alt 170537 + 11219 11490 AluSp 311 + 9 284 56420 68 0 6 45 1 0 132 10 9 15 chain 19975 chr19_GL000209v2_alt 177381 + 4136 4407 AluSp 311 + 9 284 56437 68 0 6 45 1 0 132 10 9 15 chain 85862 chr3_KI270934v1_alt 163458 + 65606 66601 LTR5A 1029 + 3 1029 20476 56 0 2 37 0 2 27 0 14 9 7 20 859 chain 4035 chr3_KI270934v1_alt 163458 + 77335 77379 MER50 708 + 526 570 91196 44 chain 79186 chr3_KI270934v1_alt 163458 + 96584 97835 L1PA7 6471 + 5508 6461 21805 108 1 5 50 0 5 24 1 4 306 310 0 451 chain 6160 chr6_GL000253v2_alt 4677643 + 13333 13406 tRNA-Lys-AAA 73 + 0 73 80493 73 chain 6258 chr6_GL000253v2_alt 4677643 + 29959 30028 tRNA-Phe-TTY 73 + 0 69 80140 69 chain 43648 chr6_GL000253v2_alt 4677643 + 42174 42786 LTR71B 605 + 0 595 32353 127 61 52 173 3 1 163 6 0 79 chain 2947 chr6_GL000253v2_alt 4677643 + 62450 62481 U2 167 + 0 31 100395 31 chain 193527 chr6_GL000253v2_alt 4677643 + 95545 97803 L1PA6 6164 + 3939 6162 9951 423 0 4 283 1 0 679 10 0 429 24 0 396 4 0 9 chain 405793 chr6_GL000253v2_alt 4677643 + 115777 120465 L1PA5 6144 + 1436 6129 5073 664 0 3 67 2 0 42 1 0 101 9 7 876 1 0 1145 0 4 415 0 1 967 0 1 190 0 1 72 5 6 131 chain 8544 chr6_GL000253v2_alt 4677643 + 123434 123537 MER57A1 433 + 325 428 73580 103 chain 2737 chr6_GL000253v2_alt 4677643 + 130614 130692 MER39 703 + 449 528 102067 17 35 36 26 chain 8044 chr6_GL000253v2_alt 4677643 + 206615 206721 tRNA-Leu-TTG 101 + 0 101 74767 40 2 0 9 6 3 49 chain 4220 chr6_GL000253v2_alt 4677643 + 210136 210180 tRNA-Met_ 45 + 0 44 90009 44 chain 6881 chr6_GL000253v2_alt 4677643 + 216590 216663 tRNA-Lys-AAA 73 + 0 73 78027 73 chain 139019 chr6_GL000253v2_alt 4677643 + 223224 224926 LTR12C 1709 + 0 1709 13186 104 5 4 250 0 1 328 0 1 149 1 0 240 0 6 28 1 0 6 2 0 107 0 4 481 chain 383328 chr6_GL000253v2_alt 4677643 + 227069 233720 L1PB1 5432 + 34 5424 5424 18 1 2 250 1 2 258 299 0 244 0 2 168 1 0 107 0 1 142 0 2 86 341 332 175 1 0 458 0 2 210 7 0 53 0 4 280 624 0 309 0 1 28 7 0 190 0 1 124 1 5 122 1 3 113 5 6 107 10 14 284 0 2 99 0 1 266 1 2 110 14 9 81 0 1 96 1 0 99 2 1 22 0 1 176 1 2 9 3 0 13 8 7 13 1 0 9 343 13 51 2 1 11 3 13 36 1 0 12 0 6 13 48 34 24 1 0 21 1 0 13 2 1 15 1 0 4 chain 6975 chr6_GL000253v2_alt 4677643 + 247758 247830 tRNA-Glu-GAG_ 72 + 0 72 77694 72 chain 20433 chr6_GL000253v2_alt 4677643 + 253409 253644 AluSp 311 + 5 239 55848 106 2 1 127 chain 7808 chr6_GL000253v2_alt 4677643 + 254560 254642 tRNA-Leu-CTY 82 + 0 82 75355 82 chain 8214 chr6_GL000253v2_alt 4677643 + 275942 276176 L1MC1 2226 + 1918 2098 74371 61 18 13 47 93 44 15 chain 17255 chr6_GL000253v2_alt 4677643 + 281115 281420 LTR12C 1709 + 778 1086 59513 51 0 81 133 78 0 43 chain 7108 chr6_GL000253v2_alt 4677643 + 312070 312274 L1MA10 1535 + 1329 1501 77232 59 42 25 24 51 36 28 chain 45792 chr6_GL000253v2_alt 4677643 + 334018 334902 L1PB1 5432 + 3934 4505 31172 385 307 0 20 7 0 78 0 1 87 chain 3758 chr6_GL000253v2_alt 4677643 + 334902 334987 L1PB1 5432 + 4506 4585 93144 16 7 11 18 2 1 14 9 0 19 chain 17296 chr6_GL000253v2_alt 4677643 + 334988 335244 L1PB1 5432 + 4585 4838 59465 41 3 0 143 1 0 28 0 1 7 16 16 17 chain 40253 chr6_GL000253v2_alt 4677643 + 335244 335869 L1PB1 5432 + 4839 5414 34474 264 1 2 11 21 0 22 1 0 9 1 0 11 15 9 52 1 0 10 11 10 42 1 0 17 15 0 29 7 4 15 2 0 24 1 0 22 0 3 9 1 0 10 chain 20632 chr6_GL000253v2_alt 4677643 + 344331 344618 L1PA7 6471 + 6177 6466 55587 96 0 1 34 15 16 122 8 8 12 chain 30098 chr6_GL000253v2_alt 4677643 + 421816 422175 L1P1 4361 + 3334 3691 41953 349 2 0 8 chain 4048 chr6_GL000253v2_alt 4677643 + 429181 429224 L1PA2 6032 + 5725 5768 91092 43 chain 39133 chr6_GL000253v2_alt 4677643 + 452622 453104 MER9a3 513 + 0 485 35264 18 0 2 90 0 1 142 6 5 175 0 1 51 chain 3371 chr6_GL000253v2_alt 4677643 + 457701 457738 L1PA15 4387 + 2264 2301 96383 37 chain 3383 chr6_GL000253v2_alt 4677643 + 467419 467454 MER52A 1651 + 795 830 96269 35 chain 75988 chr6_GL000253v2_alt 4677643 + 482868 483954 THE1C-int 1605 + 497 1598 22578 176 94 88 24 3 11 151 9 8 218 1 11 110 0 3 97 0 1 106 0 1 37 1 0 59 chain 9622 chr6_GL000253v2_alt 4677643 + 499074 499180 L1PA2 6032 + 5926 6032 71215 106 chain 28152 chr6_GL000253v2_alt 4677643 + 519361 519819 MER4A1 472 + 0 472 44630 14 9 11 16 0 7 132 51 52 159 10 14 67 chain 30647 chr6_GL000253v2_alt 4677643 + 528568 529066 LTR19A 502 + 0 502 41425 71 0 1 61 0 1 52 38 1 15 0 36 73 1 2 63 45 46 38 0 1 41 chain 541133 chr6_GL000253v2_alt 4677643 + 539023 545171 L1PA4 6152 + 2 6151 1267 125 14 0 15 10 24 252 0 3 6 4 1 14 6 7 795 7 6 1097 0 1 4 1 0 1692 0 1 2106 chain 183547 chr6_GL000253v2_alt 4677643 + 547749 549965 L1PA7 6471 + 4233 6467 10407 443 0 4 275 1 0 367 0 1 299 0 2 53 8 0 378 0 4 134 2 3 123 1 16 132 chain 4686 chr6_GL000253v2_alt 4677643 + 561717 561772 MER52D 1964 + 1150 1205 87349 55 chain 32712 chr6_GL000253v2_alt 4677643 + 562026 562471 LTR7 482 + 0 477 39747 101 15 14 110 4 3 39 0 31 21 0 2 98 13 14 44 chain 90547 chr6_GL000253v2_alt 4677643 + 564649 565659 L1PA4 6152 + 4169 5186 19588 179 0 4 57 0 1 380 0 2 394 chain 26512 chr6_GL000253v2_alt 4677643 + 606270 606632 THE1D 372 + 0 372 46963 35 2 0 33 1 11 111 0 3 125 0 1 21 2 0 32 chain 449540 chr6_GL000253v2_alt 4677643 + 625794 631601 L1PA8 5853 + 108 5852 4400 189 23 11 128 0 1 11 8 12 210 1 2 94 25 16 189 0 6 522 1 0 6 0 1 43 2 1 284 0 1 182 3 1 195 0 1 348 0 1 4 12 0 641 0 6 6 22 15 75 0 1 263 0 2 115 23 25 247 0 1 132 10 11 263 1 0 183 24 8 10 19 0 247 0 1 55 10 4 127 5 4 553 1 0 46 2 0 57 0 1 12 2 1 13 7 6 42 2 1 19 1 0 92 chain 169894 chr6_GL000253v2_alt 4677643 + 671693 673706 L1PA7 6471 + 4459 6470 11109 1038 2 1 122 1 4 379 0 2 217 7 1 247 chain 53120 chr6_GL000253v2_alt 4677643 + 739200 739796 L1PA4 6152 + 5543 6138 28528 349 1 0 246 chain 3755 chr6_GL000253v2_alt 4677643 + 804919 804963 MER81 114 + 1 45 93181 44 chain 64720 chr6_GL000253v2_alt 4677643 + 823373 824149 LTR17 781 + 0 781 25258 256 0 1 70 0 1 101 1 2 83 0 1 56 0 1 209 chain 3823 chr6_GL000253v2_alt 4677643 + 857788 857863 LTR39 781 + 464 539 92692 31 7 8 23 4 3 10 chain 4874 chr6_GL000253v2_alt 4677643 + 860524 860583 Tigger2b_Pri 1066 + 52 112 86300 22 0 1 37 chain 4328 chr6_GL000253v2_alt 4677643 + 879941 880006 L1MC1 2226 + 2129 2191 89301 6 1 0 17 1 0 32 1 0 7 chain 4440 chr6_GL000253v2_alt 4677643 + 917283 917355 MER45C 884 + 80 153 88658 53 7 8 12 chain 22951 chr6_GL000253v2_alt 4677643 + 944714 944993 AluSp 311 + 0 284 52440 19 0 1 83 0 4 177 chain 11740 chr6_GL000253v2_alt 4677643 + 956260 956591 L1PB1 5432 + 5120 5424 67334 18 1 0 9 16 11 9 2 0 52 1 0 18 24 23 20 1 0 16 32 21 10 4 5 14 2 0 6 10 10 8 1 0 21 1 0 10 1 0 19 1 0 4 chain 8315 chr6_GL000253v2_alt 4677643 + 1013034 1013135 HY3 101 + 0 101 74124 101 chain 57263 chr6_GL000253v2_alt 4677643 + 1037397 1038203 Charlie9 784 + 0 780 27172 33 1 0 10 0 1 110 1 0 41 0 1 256 10 6 4 1 0 8 1 0 4 1 0 4 1 0 6 5 0 5 1 0 4 1 0 15 13 0 184 0 2 86 chain 6716 chr6_GL000253v2_alt 4677643 + 1038275 1038364 L1PA10 4194 + 4064 4150 78583 53 3 0 33 chain 495589 chr6_GL000253v2_alt 4677643 + 1042367 1048399 L1PA6 6164 + 13 6153 3281 99 1 0 4 16 3 82 0 1 289 1 2 16 2 1 116 0 1 301 0 25 222 4 13 1144 1 2 855 0 1 75 0 12 28 0 1 645 1 2 415 0 4 110 0 2 423 11 9 131 5 7 202 0 60 12 0 1 502 0 1 110 0 2 209 chain 55503 chr6_GL000253v2_alt 4677643 + 1048618 1049446 Charlie9 784 + 0 784 27716 32 0 1 119 1 0 35 13 7 120 10 9 134 15 4 9 1 0 8 1 0 6 5 0 8 3 1 10 22 5 276 chain 4778 chr6_GL000253v2_alt 4677643 + 1049519 1049615 L1PA10 4194 + 4069 4159 86805 7 3 0 27 6 7 7 3 0 33 1 0 9 chain 2772 chr6_GL000253v2_alt 4677643 + 1080899 1080940 LTR16B2 458 + 159 201 101834 11 1 2 29 chain 58030 chr6_GL000253v2_alt 4677643 + 1083564 1084389 Charlie9 784 + 0 784 26956 32 0 1 150 16 0 19 9 10 178 0 8 58 8 0 5 3 0 9 1 0 7 2 0 7 1 0 9 1 0 10 20 5 29 1 0 179 3 0 68 chain 6917 chr6_GL000253v2_alt 4677643 + 1094935 1095035 Charlie12 129 + 30 129 77898 29 6 7 31 1 0 5 1 0 27 chain 36071 chr6_GL000253v2_alt 4677643 + 1107844 1108394 LTR10F 562 + 0 535 37360 111 0 28 89 0 3 31 83 37 182 0 1 16 3 2 35 chain 5775 chr6_GL000253v2_alt 4677643 + 1108075 1108146 LTR10F 562 + 119 190 78470 71 chain 54039 chr6_GL000253v2_alt 4677643 + 1176227 1177026 Charlie9 784 + 32 784 28215 122 1 0 12 24 16 122 0 1 152 6 0 4 4 0 9 1 0 6 21 13 4 1 0 10 26 5 197 0 2 77 chain 3049 chr6_GL000253v2_alt 4677643 + 1188079 1188114 MER30B 195 + 16 51 99311 35 chain 34868 chr6_GL000253v2_alt 4677643 + 1191564 1192022 Charlie9 784 + 0 453 38113 24 0 1 6 0 1 122 1 0 12 0 1 20 13 7 133 1 0 126 chain 3049 chr6_GL000253v2_alt 4677643 + 1201360 1201395 MER30B 195 + 16 51 99310 35 chain 7104 chr6_GL000253v2_alt 4677643 + 1206725 1206911 Charlie9 784 + 25 208 77254 7 1 0 4 4 0 42 19 20 10 13 16 48 22 20 16 chain 568341 chr6_GL000253v2_alt 4677643 + 1206980 1213011 L1HS 6032 + 0 6032 7 74 0 1 5957 chain 106603 chr6_GL000253v2_alt 4677643 + 1223686 1224996 L1PA7 6471 + 5179 6461 17481 422 0 5 8 1 0 368 0 1 153 0 1 62 39 3 41 0 2 216 chain 147608 chr6_GL000253v2_alt 4677643 + 1239613 1241247 L1PA3long 6157 + 4508 6142 12509 1634 chain 167067 chr6_GL000253v2_alt 4677643 + 1286399 1288956 L1PB1 5432 + 3093 5360 11265 170 0 1 275 0 3 194 8 1 20 1 0 205 5 6 347 0 1 124 1 0 64 1 2 120 4 0 218 275 0 67 7 6 41 10 3 53 0 2 81 0 24 17 1 0 8 1 0 12 5 1 9 11 9 43 2 1 15 1 0 44 1 0 16 1 0 6 59 44 14 chain 6940 chr6_GL000253v2_alt 4677643 + 1433233 1433312 LTR26B 539 + 401 480 77812 79 chain 3918 chr6_GL000253v2_alt 4677643 + 1434058 1434112 MER53 195 - 12 65 91987 6 1 0 47 chain 70311 chr6_GL000253v2_alt 4677643 + 1450600 1451438 L1PA7 6471 + 5617 6457 23915 152 0 1 537 8 9 141 chain 4035 chr6_GL000253v2_alt 4677643 + 1461977 1462106 MIR 256 + 54 195 91187 19 65 77 45 chain 25479 chr6_GL000253v2_alt 4677643 + 1472714 1473016 AluY 311 + 0 309 48512 50 0 7 252 chain 466616 chr6_GL000253v2_alt 4677643 + 1558208 1563603 L1PA5 6144 + 607 6138 3942 5 0 2 77 7 0 72 0 128 157 1 0 5 0 1 2104 1 0 348 1 2 833 0 4 27 0 2 106 2 1 778 12 16 12 0 1 34 0 1 198 0 2 615 chain 4719 chr6_GL000253v2_alt 4677643 + 1666765 1666822 MER20 218 + 98 155 87137 57 chain 126025 chr6_GL000253v2_alt 4677643 + 1695456 1697242 L1PB2 3958 + 1118 2874 14552 85 0 1 50 1 0 25 6 7 55 0 2 125 6 9 105 5 4 11 5 4 43 1 4 121 0 1 373 7 8 167 4 5 111 1 2 46 54 12 368 0 1 11 chain 98791 chr6_GL000253v2_alt 4677643 + 1717342 1718579 THE1A-int 1579 + 341 1579 18436 851 1 2 385 chain 79160 chr6_GL000253v2_alt 4677643 + 1721541 1722488 LTR13_ 950 + 0 950 21817 579 2 1 277 0 4 89 chain 70566 chr6_GL000253v2_alt 4677643 + 1723350 1724326 L1PREC2 3366 + 1287 2295 23852 23 1 0 194 0 11 309 19 22 5 3 0 16 3 4 16 2 0 5 1 3 230 0 8 113 0 1 6 0 12 30 chain 201453 chr6_GL000253v2_alt 4677643 + 1735600 1738642 L1PA11 4918 + 1644 4517 9662 153 1 0 15 5 2 306 0 4 136 1 5 48 0 1 204 0 3 214 4 7 375 1 8 11 32 155 42 1 5 62 1 5 105 2 0 152 320 0 34 1 0 89 5 6 384 0 1 152 5 0 65 2 1 13 12 11 51 7 21 18 4 0 9 chain 509688 chr6_GL000253v2_alt 4677643 + 1740526 1746659 L1PA6 6164 + 0 6159 2783 128 14 0 70 3 4 307 2 1 418 0 25 222 4 13 501 1 0 643 1 2 776 3 0 79 0 1 435 0 1 77 3 1 975 8 7 771 9 10 17 0 1 512 13 14 77 0 7 64 chain 38906 chr6_GL000253v2_alt 4677643 + 1781911 1782430 L1PBa 3878 + 891 1420 35421 63 4 8 22 1 6 97 0 1 4 3 2 277 3 4 45 chain 200643 chr6_GL000253v2_alt 4677643 + 1784100 1789790 L1PB1 5432 + 2253 5422 9703 183 2 3 11 3 2 46 1 2 322 2435 247 210 304 0 332 0 2 27 0 1 79 3 0 6 9 14 623 24 23 100 0 1 16 0 1 50 2 4 68 3 0 55 0 1 32 2 0 88 5 4 189 32 32 71 19 17 19 1 0 10 1 0 13 6 2 9 2 0 52 2 1 16 6 5 37 2 1 16 2 0 10 5 1 5 5 0 14 26 21 23 1 0 22 1 0 12 1 0 11 1 0 7 chain 135740 chr6_GL000253v2_alt 4677643 + 1784724 1786234 SVA_D 2077 + 42 2076 13462 570 1 0 184 0 40 80 1 490 71 4 0 599 chain 10465 chr6_GL000253v2_alt 4677643 + 1795311 1795564 L1PB1 5432 + 5023 5219 69477 75 58 10 6 1 0 24 8 6 14 5 1 9 4 2 49 chain 9482 chr6_GL000253v2_alt 4677643 + 1795565 1795801 L1PB1 5432 + 5219 5430 71515 18 2 1 42 1 0 16 4 0 15 9 0 15 9 6 11 18 16 9 3 2 23 1 0 11 1 0 14 1 0 8 1 0 4 chain 35359 chr6_GL000253v2_alt 4677643 + 1824532 1825306 MER4A1 472 + 0 472 37796 99 1 3 29 0 1 45 307 2 293 chain 15658 chr6_GL000253v2_alt 4677643 + 1828240 1828792 LTR12D 1347 + 226 776 61455 38 138 320 109 202 18 65 chain 3617 chr6_GL000253v2_alt 4677643 + 1828525 1828566 LTR12D 1347 + 652 693 76135 41 chain 3878 chr6_GL000253v2_alt 4677643 + 1828566 1828617 LTR12D 1347 + 502 662 80788 22 0 109 29 chain 2014 chr6_GL000253v2_alt 4677643 + 1828792 1828816 LTR12D 1347 + 728 752 94354 24 chain 498598 chr6_GL000253v2_alt 4677643 + 1831041 1837194 L1PA6 6164 + 13 6162 3178 369 38 32 4 0 1 30 19 0 7 0 4 107 8 7 213 0 17 378 0 3 668 0 1 177 6 0 153 7 9 141 2 1 16 33 22 469 1 3 512 0 1 231 76 76 49 0 1 229 1 0 48 7 9 507 0 2 384 1 2 335 0 1 83 1 0 367 0 5 313 0 8 8 2 1 6 7 0 135 1 0 4 chain 8341 chr6_GL000253v2_alt 4677643 + 1849486 1849597 L1MA7 2200 + 1520 1630 74053 33 1 0 77 chain 20517 chr6_GL000253v2_alt 4677643 + 1899612 1899848 AluY 311 + 62 299 55763 70 0 1 166 chain 10228 chr6_GL000253v2_alt 4677643 + 2153087 2153319 MER49 923 + 597 828 69948 53 23 25 5 2 0 75 53 52 21 chain 6615 chr6_GL000253v2_alt 4677643 + 2153587 2153837 MER61C 433 + 32 354 78920 8 2 0 25 21 111 13 0 1 5 19 15 23 62 64 12 14 0 6 1 0 39 chain 19398 chr6_GL000253v2_alt 4677643 + 2174494 2174738 7SK 245 + 0 245 57132 79 1 2 164 chain 72555 chr6_GL000253v2_alt 4677643 + 2179052 2180121 MER11A 1151 + 0 1137 23419 77 0 8 116 0 3 26 0 4 60 0 11 11 37 0 164 17 20 32 0 12 138 6 9 11 3 4 37 0 4 69 6 33 13 0 32 97 8 7 87 1 0 27 1 0 25 chain 40613 chr6_GL000253v2_alt 4677643 + 2184145 2184993 MER41A 554 + 28 554 34210 285 326 0 94 1 5 142 chain 383533 chr6_GL000253v2_alt 4677643 + 2276611 2281652 HERVL-int 5654 + 885 5654 5420 301 4 14 126 12 13 385 0 2 149 0 3 150 316 3 110 0 4 420 0 1 349 0 3 511 8 7 27 0 2 6 3 1 197 9 10 132 4 5 23 15 18 432 18 23 112 6 7 29 0 2 89 0 3 670 0 1 105 0 1 323 chain 29020 chr6_GL000253v2_alt 4677643 + 2281652 2282061 MLT2A1 477 + 0 477 43294 146 0 1 21 5 2 9 0 1 24 0 1 54 0 28 97 19 59 34 chain 3978 chr6_GL000253v2_alt 4677643 + 2327821 2327871 LTR12C 1709 + 878 928 57709 50 chain 25713 chr6_GL000253v2_alt 4677643 + 2327871 2328252 LTR12C 1709 + 650 997 48149 187 1 0 79 0 16 49 49 0 16 chain 141435 chr6_GL000253v2_alt 4677643 + 2331023 2332717 LTR12C 1709 + 0 1709 12986 479 1 17 341 1 0 274 1 0 6 5 3 104 0 4 276 1 0 205 chain 23440 chr6_GL000253v2_alt 4677643 + 2363778 2364119 THE1A 353 + 0 353 51693 62 37 49 242 chain 5411 chr6_GL000253v2_alt 4677643 + 2393542 2393606 U6 107 + 37 101 83652 64 chain 15009 chr6_GL000253v2_alt 4677643 + 2408130 2408322 MER50 708 + 497 701 62259 49 0 9 55 2 0 5 0 5 81 chain 4824 chr6_GL000253v2_alt 4677643 + 2477645 2477732 MER50B 698 + 483 568 86581 36 0 1 5 11 10 7 2 0 26 chain 130089 chr6_GL000253v2_alt 4677643 + 2505816 2507360 LTR12C 1709 + 1 1709 14029 755 0 161 195 1 0 5 7 5 102 0 4 120 0 2 359 chain 23771 chr6_GL000253v2_alt 4677643 + 2539569 2539859 AluSp 311 + 6 294 51164 276 2 0 12 chain 3162 chr6_GL000253v2_alt 4677643 + 2562481 2562519 MER21-int 1364 + 940 978 98267 38 chain 54662 chr6_GL000253v2_alt 4677643 + 2584447 2589129 L1PA8A 6298 + 5455 6290 27989 34 7 8 78 3861 0 237 2 14 124 0 1 24 1 2 205 3 1 8 3 4 4 1 0 46 10 11 34 chain 2948 chr6_GL000253v2_alt 4677643 + 2591732 2591800 L1PREC2 3366 + 1229 1299 100382 18 1 2 18 15 16 16 chain 9186 chr6_GL000253v2_alt 4677643 + 2633652 2633778 L1PA13 3608 + 3328 3448 72151 7 1 0 56 1 0 5 2 0 45 2 0 7 chain 59801 chr6_GL000253v2_alt 4677643 + 2637310 2638130 SVA_B 1603 + 886 1603 26430 25 13 9 13 1 0 20 47 0 15 5 0 8 1 0 10 5 1 6 41 0 22 1 0 37 0 1 550 chain 95301 chr6_GL000253v2_alt 4677643 + 2651005 2652152 L1PA5 6144 + 5011 6144 18867 96 0 1 63 0 1 46 22 4 110 1 2 375 0 1 434 chain 60475 chr6_GL000253v2_alt 4677643 + 2669069 2669880 L1PA8A 6298 + 5455 6289 26244 34 10 12 10 0 1 34 1 18 16 1 0 476 1 4 185 3 4 40 chain 25749 chr6_GL000253v2_alt 4677643 + 2735509 2735844 MLT2A1 477 + 5 342 48097 27 1 0 110 0 1 24 6 10 32 2 0 133 chain 451264 chr6_GL000253v2_alt 4677643 + 2737918 2743589 HERVL-int 5654 + 0 5654 4357 203 0 4 23 0 3 13 5 3 5 0 3 154 2 0 238 1 0 425 0 1 354 0 1 426 0 1 71 19 20 169 67 7 143 0 3 176 3 0 417 0 1 330 0 1 112 7 1 450 0 12 181 0 4 82 0 4 230 5 6 30 0 2 115 1 2 136 0 3 191 0 6 463 6 5 146 2 1 53 0 1 76 1 6 49 4 5 87 chain 32624 chr6_GL000253v2_alt 4677643 + 2743589 2744043 MLT2A1 477 + 0 477 39840 142 0 1 26 1 5 30 2 0 194 20 40 39 chain 25044 chr6_GL000253v2_alt 4677643 + 2815169 2815551 LTR3A 482 + 27 420 49200 125 14 19 108 7 8 20 5 6 67 5 7 16 0 2 15 chain 18408 chr6_GL000253v2_alt 4677643 + 2827215 2827574 L1MA8 2339 + 1847 2188 58228 85 5 1 25 4 5 46 1 0 36 1 6 18 70 50 38 2 3 28 chain 3085 chr6_GL000253v2_alt 4677643 + 3157711 3157746 LTR12C 1709 + 683 718 98920 35 chain 5497 chr6_GL000253v2_alt 4677643 + 3512252 3512316 L1MA3 4352 + 2970 3034 83245 64 chain 46403 chr6_GL000253v2_alt 4677643 + 3570274 3570783 L1PA4 6152 + 4485 5013 30885 315 0 19 194 chain 278980 chr6_GL000253v2_alt 4677643 + 3575932 3580192 L1PB1 5432 + 1743 5427 7453 679 0 4 73 0 1 8 0 5 64 0 5 248 0 4 8 3 0 157 9 1 7 5 0 187 0 2 232 1 6 51 0 1 6 0 1 121 0 1 4 2 1 86 1 0 17 26 8 699 0 1 46 27 32 115 3 0 158 564 16 287 20 21 9 3 0 23 1 0 9 1 0 9 9 5 7 2 0 9 0 3 40 2 1 16 1 0 42 0 8 9 14 1 30 2 0 5 1 0 14 2 0 18 7 6 21 4 3 10 1 0 14 1 0 5 1 0 4 chain 23597 chr6_GL000253v2_alt 4677643 + 3581978 3582353 MSTA 426 + 0 426 51437 104 26 54 78 32 29 33 0 26 102 chain 4437 chr6_GL000253v2_alt 4677643 + 3582353 3582404 MSTA-int 1630 + 0 51 88693 51 chain 392951 chr6_GL000253v2_alt 4677643 + 3584533 3589798 L1PA8 5853 + 50 5853 5272 15 8 6 11 1 0 13 52 13 60 0 3 134 0 4 153 0 1 166 307 0 25 8 5 20 0 1 337 1 0 128 0 1 871 2 1 62 0 1 160 0 863 105 8 6 518 0 3 300 0 1 20 0 2 23 0 6 282 1 0 317 9 17 85 3 0 99 2 1 95 0 1 108 0 1 397 0 10 59 3 2 46 2 0 54 1 0 5 5 6 6 1 0 9 9 8 44 2 1 19 4 3 90 chain 45832 chr6_GL000253v2_alt 4677643 + 3609979 3610574 PABL_A 660 + 0 620 31140 96 0 15 13 0 2 14 0 1 78 1 0 60 3 0 14 2 13 314 chain 27040 chr6_GL000253v2_alt 4677643 + 3613324 3613608 AluYa5 310 + 16 300 46212 284 chain 33180 chr6_GL000253v2_alt 4677643 + 3636443 3636894 LTR46 455 + 0 455 39379 30 9 10 147 1 5 116 1 0 96 1 0 14 0 1 36 chain 5223 chr6_GL000253v2_alt 4677643 + 3657891 3657955 U6 107 + 11 75 84575 64 chain 11565 chr6_GL000253v2_alt 4677643 + 3667346 3667531 MSTC 436 + 248 423 67634 63 23 19 37 6 0 56 chain 74377 chr6_GL000253v2_alt 4677643 + 3679306 3680273 HUERS-P2-int 2744 + 1566 2512 22991 350 4 5 327 33 13 107 1 2 4 1 0 66 1 0 48 5 4 20 chain 27991 chr6_GL000253v2_alt 4677643 + 3738341 3738729 L1PA8 5853 + 5451 5853 44880 113 1 0 44 6 4 49 0 20 6 3 1 22 0 1 22 11 10 17 1 0 93 chain 45447 chr6_GL000253v2_alt 4677643 + 3756678 3757267 THE1B-int 1605 + 13 630 31342 255 0 2 160 1 26 104 5 6 64 chain 20310 chr6_GL000253v2_alt 4677643 + 3758541 3758859 THE1B 368 + 0 328 56004 107 2 3 59 2 1 22 41 51 85 chain 32469 chr6_GL000253v2_alt 4677643 + 3761780 3762376 L1PA15 4387 + 3749 4326 39972 64 52 42 36 3 1 40 1 0 101 0 1 66 6 11 14 6 5 55 1 0 21 4 0 9 1 0 41 34 31 27 3 1 11 chain 3707 chr6_GL000253v2_alt 4677643 + 3802178 3802221 LTR12D 1347 + 401 444 93565 43 chain 57326 chr6_GL000253v2_alt 4677643 + 3806008 3806685 LTR12 884 + 186 884 27151 170 0 22 382 3 2 122 chain 57059 chr6_GL000253v2_alt 4677643 + 3828156 3828870 LTR12 884 + 0 869 27250 59 0 41 22 1 26 114 0 91 25 3 1 490 chain 55144 chr6_GL000253v2_alt 4677643 + 3850778 3851401 L1PA5 6144 + 4301 4923 27827 6 1 0 616 chain 59995 chr6_GL000253v2_alt 4677643 + 3865573 3866253 L1PA4 6152 + 5471 6151 26375 680 chain 209524 chr6_GL000253v2_alt 4677643 + 3884425 3886751 L1PA3long 6157 + 3821 6147 9361 2326 chain 143898 chr6_GL000253v2_alt 4677643 + 3920721 3922320 L1PA3long 6157 + 4558 6157 12777 1599 chain 27345 chr6_GL000253v2_alt 4677643 + 3947536 3947862 LTR14A 344 + 5 344 45769 59 0 11 30 0 2 237 chain 5263 chr6_GL000253v2_alt 4677643 + 3949801 3949864 HERVK14-int 1672 + 1603 1665 84374 56 1 0 6 chain 28712 chr6_GL000253v2_alt 4677643 + 3952423 3952761 LTR14A 344 + 0 344 43775 10 0 1 21 1 0 73 0 2 56 0 4 177 chain 15902 chr6_GL000253v2_alt 4677643 + 3978016 3978281 MER51A 677 + 0 234 61154 42 4 2 14 4 1 117 17 0 24 13 3 21 0 1 9 chain 9454 chr6_GL000253v2_alt 4677643 + 3983295 3983494 HERV9-int 5642 + 5476 5642 71599 23 2 0 25 2 1 60 1 0 13 28 5 17 11 5 17 chain 113454 chr6_GL000253v2_alt 4677643 + 4000834 4002088 L1PA3long 6157 + 4914 6157 16616 868 12 1 374 chain 90658 chr6_GL000253v2_alt 4677643 + 4005438 4006517 MER11C 1089 + 0 1073 19561 567 8 8 18 0 1 78 1 0 177 6 0 224 chain 57447 chr6_GL000253v2_alt 4677643 + 4029195 4029907 LTR30 714 + 2 714 27117 10 0 1 110 0 1 89 0 1 40 1 0 280 13 12 146 1 0 22 chain 566332 chr6_GL000253v2_alt 4677643 + 4034201 4040227 L1HS 6032 + 6 6032 53 6026 chain 120711 chr6_GL000253v2_alt 4677643 + 4065841 4067131 SVA_F 1814 + 335 1814 15404 553 1 0 8 0 191 100 1 0 627 chain 146336 chr6_GL000253v2_alt 4677643 + 4074586 4076511 SVA_E 1901 + 0 1901 12586 153 2 0 245 0 156 97 5 85 81 1 0 17 5 0 93 4 0 17 49 0 93 97 0 58 1 0 37 49 0 100 54 1 27 0 1 640 chain 3347 chr6_GL000253v2_alt 4677643 + 4075306 4075352 SVA_E 1901 + 1119 1165 57906 46 chain 4399 chr6_GL000253v2_alt 4677643 + 4075484 4075545 SVA_E 1901 + 1102 1163 56315 61 chain 2468 chr6_GL000253v2_alt 4677643 + 4075641 4075690 SVA_E 1901 + 957 1006 31541 49 chain 1461 chr6_GL000253v2_alt 4677643 + 4075790 4075819 SVA_E 1901 + 1105 1134 31541 29 chain 128634 chr6_GL000253v2_alt 4677643 + 4089940 4091823 THE1A-int 1579 + 31 1574 14202 36 0 1 434 0 1 73 0 1 691 343 0 306 chain 27997 chr6_GL000253v2_alt 4677643 + 4091828 4092182 THE1A 353 + 0 353 44868 110 1 0 243 chain 80393 chr6_GL000253v2_alt 4677643 + 4093512 4094474 LTR5_Hs 974 + 0 974 21550 288 0 6 173 0 1 351 8 15 37 2 0 103 chain 76095 chr6_GL000253v2_alt 4677643 + 4098816 4099784 LTR5_Hs 974 + 0 974 22543 289 0 1 180 0 1 185 1 0 163 8 15 19 20 18 103 chain 164078 chr6_GL000253v2_alt 4677643 + 4112198 4114832 L1MA1 4479 + 1697 4190 11477 245 27 29 22 0 1 26 1 2 5 1 0 54 0 6 75 4 0 117 2 3 142 9 10 46 0 4 43 27 0 76 4 7 48 11 10 79 11 15 9 3 1 14 0 1 8 10 9 16 1 0 138 1 0 27 2 0 9 0 1 165 2 0 51 1 2 38 1 0 12 5 0 53 5 0 26 0 20 11 122 14 6 7 0 135 0 1 16 0 2 59 0 1 108 0 1 4 2 0 19 2 0 16 1 0 74 1 0 17 2 0 13 1 0 84 13 9 89 0 1 36 1 0 29 2 0 44 1 0 6 28 20 13 chain 31009 chr6_GL000253v2_alt 4677643 + 4118110 4118582 MLT2A2 560 + 1 560 41115 5 1 0 118 1 0 45 12 11 12 50 129 81 0 11 147 chain 29852 chr6_GL000253v2_alt 4677643 + 4125073 4125540 L1PA8 5853 + 5422 5853 42182 142 1 0 44 2 0 37 38 8 29 27 25 12 0 1 20 2 1 22 1 0 90 chain 43156 chr6_GL000253v2_alt 4677643 + 4153124 4153655 L1PA7 6471 + 5759 6292 32680 83 5 6 106 6 7 331 chain 14711 chr6_GL000253v2_alt 4677643 + 4153657 4153860 L1M1 2793 + 1889 2099 62661 119 0 4 59 4 7 21 chain 40692 chr6_GL000253v2_alt 4677643 + 4194930 4195445 MER9a1 513 + 0 513 34151 46 25 0 198 1 23 30 0 1 215 chain 57609 chr6_GL000253v2_alt 4677643 + 4201724 4202563 L1PA13 3608 + 218 1029 27079 73 2 0 115 34 32 7 2 0 14 27 9 12 2 1 19 3 1 15 2 0 11 6 5 8 0 1 88 2 1 365 0 2 32 chain 85984 chr6_GL000253v2_alt 4677643 + 4206880 4208047 L1PA11 4918 + 3401 4578 20443 257 3 2 36 1 0 563 0 1 50 0 4 18 0 4 59 6 5 7 2 0 68 2 0 12 5 4 17 4 0 11 6 22 13 1 0 13 2 0 11 chain 5358 chr6_GL000253v2_alt 4677643 + 4383766 4383894 MSTD 398 + 0 132 83919 15 53 57 60 chain 9915 chr6_GL000253v2_alt 4677643 + 4475712 4475865 HERVK22-int 3844 + 3663 3815 70585 86 18 17 49 chain 7851 chr6_GL000253v2_alt 4677643 + 4619073 4619163 HY4 93 + 0 90 75246 90 chain 5586 chr6_GL000253v2_alt 4677643 + 4634258 4634319 MER5A 189 + 30 91 82866 61 chain 9477 chr19_GL949749v2_alt 1091841 + 1213 1389 MER5A 189 + 11 168 71531 89 4 0 12 43 28 28 chain 82486 chr19_GL949749v2_alt 1091841 + 11133 12088 LTR13A 966 + 0 953 21132 76 0 4 582 6 0 291 chain 8842 chr19_GL949749v2_alt 1091841 + 126281 126379 BC200 147 + 5 103 72883 98 chain 5445 chr19_GL949749v2_alt 1091841 + 856915 856987 MER2B 336 + 176 248 83483 72 chain 67500 chr19_GL949749v2_alt 1091841 + 951258 952187 LTR5_Hs 974 + 0 974 24574 168 11 20 271 0 4 12 0 5 146 10 9 23 1 2 9 8 10 13 0 2 82 7 7 34 5 6 9 0 22 120 chain 24493 chr19_GL949749v2_alt 1091841 + 960275 961768 MER41A 554 + 0 387 50037 14 0 1 80 249 0 25 1 4 46 891 29 158 3 4 26 chain 19494 chr19_GL949749v2_alt 1091841 + 984720 984959 AluSp 311 + 58 297 57034 239 chain 20976 chr19_GL949749v2_alt 1091841 + 986126 986386 AluSc 308 + 28 297 55160 32 0 8 40 2 3 186 chain 16137 chr19_GL949749v2_alt 1091841 + 1024316 1024581 AluSc 308 + 20 298 60838 44 2 0 114 1 33 26 33 23 24 7 0 14 chain 55656 chr19_GL949749v2_alt 1091841 + 1029948 1030596 L1PA10 4194 + 3502 4150 27680 584 0 3 27 3 0 34 chain 3384 chr19_GL949749v2_alt 1091841 + 1043613 1043666 L1PB3 3668 + 3511 3562 96243 17 3 1 33 chain 83380 chr19_GL949749v2_alt 1091841 + 1067212 1068212 LTR5A 1029 + 0 1029 20944 13 0 4 116 1 14 621 15 21 156 0 6 78 chain 86188 chr3_KI270935v1_alt 197351 + 24017 25005 LTR13 1007 + 18 1007 20390 345 0 14 52 15 1 429 0 1 147 chain 34194 chr3_KI270935v1_alt 197351 + 50033 50495 MER9a3 513 + 7 513 38570 11 0 2 54 0 1 104 4 5 90 3 21 13 8 29 97 0 1 78 chain 18189 chr3_KI270935v1_alt 197351 + 66880 67120 L1PA7 6471 + 5253 5494 58472 30 7 8 203 chain 3482 chr3_KI270935v1_alt 197351 + 97324 97369 MIR3 191 + 75 120 95368 45 chain 115010 chr3_KI270935v1_alt 197351 + 161460 162980 L1PA8 5853 + 4306 5853 16393 6 0 6 94 6 13 443 0 1 50 0 2 66 0 4 18 2 0 513 1 0 42 1 0 44 2 0 73 1 0 7 10 12 16 32 44 93 chain 6160 chr6_GL000254v2_alt 4827813 + 13336 13409 tRNA-Lys-AAA 73 + 0 73 80492 73 chain 6258 chr6_GL000254v2_alt 4827813 + 29979 30048 tRNA-Phe-TTY 73 + 0 69 80139 69 chain 43648 chr6_GL000254v2_alt 4827813 + 42194 42806 LTR71B 605 + 0 595 32352 127 61 52 173 3 1 163 6 0 79 chain 2947 chr6_GL000254v2_alt 4827813 + 62474 62505 U2 167 + 0 31 100394 31 chain 193322 chr6_GL000254v2_alt 4827813 + 95579 97837 L1PA6 6164 + 3939 6162 9959 423 0 4 283 1 0 679 10 0 429 24 0 396 4 0 9 chain 405586 chr6_GL000254v2_alt 4827813 + 115816 120504 L1PA5 6144 + 1436 6129 5083 664 0 3 67 2 0 42 1 0 101 9 7 876 1 0 1145 0 4 415 0 1 967 0 1 190 0 1 72 5 6 131 chain 8544 chr6_GL000254v2_alt 4827813 + 123471 123574 MER57A1 433 + 325 428 73579 103 chain 7021 chr6_GL000254v2_alt 4827813 + 147137 147210 tRNA-Arg-CGG 73 + 0 73 77526 73 chain 4259 chr6_GL000254v2_alt 4827813 + 151234 151615 LTR12C 1709 + 651 1004 89765 19 92 59 16 16 133 17 173 60 31 1 2 16 chain 8044 chr6_GL000254v2_alt 4827813 + 206805 206911 tRNA-Leu-TTG 101 + 0 101 74766 40 2 0 9 6 3 49 chain 4220 chr6_GL000254v2_alt 4827813 + 210329 210373 tRNA-Met_ 45 + 0 44 90008 44 chain 6881 chr6_GL000254v2_alt 4827813 + 216773 216846 tRNA-Lys-AAA 73 + 0 73 78026 73 chain 11362 chr6_GL000254v2_alt 4827813 + 223407 223548 LTR12C 1709 + 0 140 67984 104 5 4 32 chain 3960 chr6_GL000254v2_alt 4827813 + 281299 281369 LTR12C 1709 + 778 929 59512 51 0 81 19 chain 27522 chr6_GL000254v2_alt 4827813 + 281369 281715 LTR12C 1709 + 651 1037 45558 186 1 0 139 0 41 20 chain 7108 chr6_GL000254v2_alt 4827813 + 312247 312451 L1MA10 1535 + 1329 1501 77231 59 42 25 24 51 36 28 chain 105717 chr6_GL000254v2_alt 4827813 + 334192 336054 L1PB1 5432 + 3934 5414 17596 385 308 0 20 7 0 78 0 1 87 0 1 16 7 11 18 2 1 14 9 0 19 1 0 41 3 0 143 1 0 28 0 1 7 16 16 17 0 1 264 41 11 24 1 0 9 1 0 11 15 9 52 1 0 10 11 10 42 1 0 17 15 0 29 7 4 15 2 0 24 1 0 22 0 3 9 1 0 10 chain 20632 chr6_GL000254v2_alt 4827813 + 344516 344803 L1PA7 6471 + 6177 6466 55586 96 0 1 34 15 16 122 8 8 12 chain 30098 chr6_GL000254v2_alt 4827813 + 421994 422353 L1P1 4361 + 3334 3691 41952 349 2 0 8 chain 4048 chr6_GL000254v2_alt 4827813 + 429355 429398 L1PA2 6032 + 5725 5768 91091 43 chain 38261 chr6_GL000254v2_alt 4827813 + 452790 453272 MER9a3 513 + 0 485 35871 18 0 2 86 4 5 142 6 5 175 0 1 51 chain 3371 chr6_GL000254v2_alt 4827813 + 457854 457891 L1PA15 4387 + 2264 2301 96382 37 chain 3383 chr6_GL000254v2_alt 4827813 + 467565 467600 MER52A 1651 + 795 830 96268 35 chain 75988 chr6_GL000254v2_alt 4827813 + 483017 484103 THE1C-int 1605 + 497 1598 22577 176 94 88 24 3 11 151 9 8 218 1 11 110 0 3 97 0 1 106 0 1 37 1 0 59 chain 4686 chr6_GL000254v2_alt 4827813 + 561874 561929 MER52D 1964 + 1150 1205 87348 55 chain 32252 chr6_GL000254v2_alt 4827813 + 562183 562649 LTR7 482 + 0 477 40144 101 15 14 82 21 0 28 6 36 59 0 2 97 13 14 44 chain 175922 chr6_GL000254v2_alt 4827813 + 564826 566788 L1PA4 6152 + 4169 6141 10782 179 0 4 57 0 1 380 0 2 512 0 4 578 1 0 255 chain 26512 chr6_GL000254v2_alt 4827813 + 606491 606853 THE1D 372 + 0 372 46962 35 2 0 33 1 11 111 0 3 125 0 1 21 2 0 32 chain 449977 chr6_GL000254v2_alt 4827813 + 626016 631823 L1PA8 5853 + 108 5852 4393 189 23 11 128 0 1 11 8 12 210 1 2 94 25 16 189 0 6 522 1 0 6 0 1 43 2 1 284 0 1 182 3 1 195 0 1 348 0 1 4 12 0 641 0 6 6 22 15 75 0 1 263 0 2 115 23 25 247 0 1 132 10 11 263 1 0 183 24 8 10 19 0 247 0 1 55 10 4 127 5 4 553 1 0 46 2 0 57 0 1 12 2 1 13 7 6 42 2 1 19 1 0 92 chain 2947 chr6_GL000254v2_alt 4827813 + 720276 720307 U2 167 + 0 31 100393 31 chain 53120 chr6_GL000254v2_alt 4827813 + 739449 740045 L1PA4 6152 + 5543 6138 28527 349 1 0 246 chain 3755 chr6_GL000254v2_alt 4827813 + 805170 805214 MER81 114 + 1 45 93180 44 chain 64720 chr6_GL000254v2_alt 4827813 + 823617 824393 LTR17 781 + 0 781 25257 256 0 1 70 0 1 101 1 2 83 0 1 56 0 1 209 chain 3823 chr6_GL000254v2_alt 4827813 + 857999 858074 LTR39 781 + 464 539 92691 31 7 8 23 4 3 10 chain 4874 chr6_GL000254v2_alt 4827813 + 860738 860797 Tigger2b_Pri 1066 + 52 112 86299 22 0 1 37 chain 4701 chr6_GL000254v2_alt 4827813 + 880159 880229 L1MC1 2226 + 2129 2196 87262 6 1 0 17 1 0 32 1 0 12 chain 4440 chr6_GL000254v2_alt 4827813 + 917545 917617 MER45C 884 + 80 153 88657 53 7 8 12 chain 22951 chr6_GL000254v2_alt 4827813 + 944978 945257 AluSp 311 + 0 284 52439 19 0 1 83 0 4 177 chain 11740 chr6_GL000254v2_alt 4827813 + 956531 956862 L1PB1 5432 + 5120 5424 67333 18 1 0 9 16 11 9 2 0 52 1 0 18 24 23 20 1 0 16 32 21 10 4 5 14 2 0 6 10 10 8 1 0 21 1 0 10 1 0 19 1 0 4 chain 8784 chr6_GL000254v2_alt 4827813 + 1013096 1013197 HY3 101 + 0 101 73032 101 chain 57263 chr6_GL000254v2_alt 4827813 + 1037468 1038274 Charlie9 784 + 0 780 27171 33 1 0 10 0 1 110 1 0 41 0 1 256 10 6 4 1 0 8 1 0 4 1 0 4 1 0 6 5 0 5 1 0 4 1 0 15 13 0 184 0 2 86 chain 6716 chr6_GL000254v2_alt 4827813 + 1038346 1038435 L1PA10 4194 + 4064 4150 78582 53 3 0 33 chain 496303 chr6_GL000254v2_alt 4827813 + 1042438 1048474 L1PA6 6164 + 13 6153 3254 99 1 0 4 16 3 82 0 1 289 1 2 16 2 1 116 0 1 301 0 25 222 4 13 1144 1 2 855 0 1 79 0 8 28 0 1 645 1 2 415 0 4 110 0 2 423 11 9 131 5 7 202 0 60 12 0 1 502 0 1 110 0 2 209 chain 55503 chr6_GL000254v2_alt 4827813 + 1048693 1049521 Charlie9 784 + 0 784 27715 32 0 1 119 1 0 35 13 7 120 10 9 134 15 4 9 1 0 8 1 0 6 5 0 8 3 1 10 22 5 276 chain 4778 chr6_GL000254v2_alt 4827813 + 1049594 1049690 L1PA10 4194 + 4069 4159 86804 7 3 0 27 6 7 7 3 0 33 1 0 9 chain 3063 chr6_GL000254v2_alt 4827813 + 1080876 1080920 LTR16B2 458 + 159 204 99198 11 1 2 32 chain 58152 chr6_GL000254v2_alt 4827813 + 1083548 1084373 Charlie9 784 + 0 784 26920 32 0 1 150 16 0 19 9 10 178 0 8 58 8 0 5 3 0 9 1 0 7 2 0 7 1 0 9 1 0 10 20 5 29 1 0 179 3 0 68 chain 6917 chr6_GL000254v2_alt 4827813 + 1094929 1095029 Charlie12 129 + 30 129 77897 29 6 7 31 1 0 5 1 0 27 chain 36071 chr6_GL000254v2_alt 4827813 + 1107841 1108391 LTR10F 562 + 0 535 37359 111 0 28 89 0 3 31 83 37 182 0 1 16 3 2 35 chain 5775 chr6_GL000254v2_alt 4827813 + 1108072 1108143 LTR10F 562 + 119 190 78469 71 chain 31508 chr6_GL000254v2_alt 4827813 + 1139016 1139493 Charlie9 784 + 0 457 40728 23 0 1 7 0 1 44 0 1 75 1 0 35 11 5 136 2 1 69 28 13 46 chain 3049 chr6_GL000254v2_alt 4827813 + 1290897 1290932 MER30B 195 + 16 51 99309 35 chain 106894 chr6_GL000254v2_alt 4827813 + 1306989 1308299 L1PA7 6471 + 5179 6461 17447 422 0 5 8 1 0 368 0 1 153 0 1 62 39 3 41 0 2 216 chain 147893 chr6_GL000254v2_alt 4827813 + 1322936 1324570 L1PA3long 6157 + 4508 6142 12489 1634 chain 167048 chr6_GL000254v2_alt 4827813 + 1369723 1372281 L1PB1 5432 + 3093 5360 11267 170 0 1 275 0 3 194 9 1 20 1 0 205 5 6 347 0 1 124 1 0 64 1 2 120 4 0 218 275 0 67 7 6 41 10 3 53 0 2 81 0 24 17 1 0 8 1 0 12 5 1 9 11 9 43 2 1 15 1 0 44 1 0 16 1 0 6 59 44 14 chain 4007 chr6_GL000254v2_alt 4827813 + 1463871 1463922 MLT2D 439 + 4 55 91401 51 chain 3918 chr6_GL000254v2_alt 4827813 + 1467418 1467472 MER53 195 - 12 65 91986 6 1 0 47 chain 70769 chr6_GL000254v2_alt 4827813 + 1483959 1484797 L1PA7 6471 + 5617 6457 23810 152 0 1 537 8 9 141 chain 4035 chr6_GL000254v2_alt 4827813 + 1495330 1495459 MIR 256 + 54 195 91186 19 65 77 45 chain 126616 chr6_GL000254v2_alt 4827813 + 1729278 1731064 L1PB2 3958 + 1118 2874 14463 85 0 1 50 1 0 25 6 7 55 0 2 125 6 9 105 5 4 11 5 4 43 1 4 121 0 1 373 7 8 167 4 5 111 0 1 47 54 12 368 0 1 11 chain 79282 chr6_GL000254v2_alt 4827813 + 1755341 1756288 LTR13_ 950 + 0 950 21786 579 2 1 277 0 4 89 chain 201777 chr6_GL000254v2_alt 4827813 + 1769399 1772441 L1PA11 4918 + 1644 4517 9652 153 1 0 15 5 2 306 0 4 136 0 4 49 0 1 204 0 3 214 4 7 375 1 8 11 32 155 42 1 5 62 1 5 105 2 0 152 320 0 34 1 0 89 5 6 384 0 1 152 5 0 65 2 1 13 12 11 51 7 21 18 4 0 9 chain 509977 chr6_GL000254v2_alt 4827813 + 1774325 1780458 L1PA6 6164 + 0 6159 2771 128 14 0 70 3 4 307 2 1 418 0 25 222 4 13 1144 1 2 776 3 0 79 0 1 513 3 1 975 8 7 771 9 10 17 0 1 512 13 14 77 0 7 64 chain 35359 chr6_GL000254v2_alt 4827813 + 1858354 1859128 MER4A1 472 + 0 472 37795 99 1 3 29 0 1 45 307 2 293 chain 15658 chr6_GL000254v2_alt 4827813 + 1862062 1862614 LTR12D 1347 + 226 776 61454 38 138 320 109 202 18 65 chain 3617 chr6_GL000254v2_alt 4827813 + 1862347 1862388 LTR12D 1347 + 652 693 76134 41 chain 3878 chr6_GL000254v2_alt 4827813 + 1862388 1862439 LTR12D 1347 + 502 662 80787 22 0 109 29 chain 2014 chr6_GL000254v2_alt 4827813 + 1862614 1862638 LTR12D 1347 + 728 752 94353 24 chain 498601 chr6_GL000254v2_alt 4827813 + 1864863 1871015 L1PA6 6164 + 13 6162 3176 369 38 32 4 0 1 30 19 0 7 0 4 107 8 7 213 0 17 378 0 3 668 0 1 177 6 0 153 7 9 141 2 1 16 32 22 469 1 3 512 0 1 231 76 76 49 0 1 229 1 0 48 7 9 507 0 2 384 1 2 335 0 1 83 1 0 367 0 5 313 0 8 8 2 1 6 7 0 135 1 0 4 chain 8341 chr6_GL000254v2_alt 4827813 + 1883302 1883413 L1MA7 2200 + 1520 1630 74052 33 1 0 77 chain 20517 chr6_GL000254v2_alt 4827813 + 1933429 1933665 AluY 311 + 62 299 55762 70 0 1 166 chain 6612 chr6_GL000254v2_alt 4827813 + 2187423 2187674 MER61C 433 + 32 354 78938 8 2 0 25 21 111 13 0 1 5 19 15 23 62 64 12 15 0 6 1 0 39 chain 19529 chr6_GL000254v2_alt 4827813 + 2208407 2208651 7SK 245 + 0 245 56986 79 1 2 164 chain 41143 chr6_GL000254v2_alt 4827813 + 2218057 2218904 MER41A 554 + 28 554 33884 285 325 0 95 0 4 142 chain 384018 chr6_GL000254v2_alt 4827813 + 2310519 2315562 HERVL-int 5654 + 885 5654 5411 301 4 14 126 12 13 385 0 2 149 0 3 150 318 3 110 0 4 420 0 1 349 0 3 511 8 7 27 0 2 6 3 1 197 9 10 132 4 5 23 15 18 432 18 23 112 6 7 29 0 2 89 0 3 670 0 1 105 0 1 323 chain 29112 chr6_GL000254v2_alt 4827813 + 2315562 2315971 MLT2A1 477 + 0 477 43170 146 0 1 21 5 2 9 0 1 24 0 1 54 0 28 97 19 59 34 chain 108326 chr6_GL000254v2_alt 4827813 + 2344435 2345750 LTR12C 1709 + 0 1709 17276 188 14 0 72 1 26 364 0 278 184 1 0 5 3 1 106 0 4 168 0 102 80 0 2 129 chain 5668 chr6_GL000254v2_alt 4827813 + 2361409 2361542 LTR12C 1709 + 773 946 59797 64 1 0 50 0 41 18 chain 23147 chr6_GL000254v2_alt 4827813 + 2361542 2361851 LTR12C 1709 + 668 1033 52149 169 1 0 72 3 18 4 0 1 39 0 41 21 chain 143296 chr6_GL000254v2_alt 4827813 + 2364678 2366387 LTR12C 1709 + 0 1709 12834 262 0 1 574 1 0 274 1 0 6 5 3 104 0 4 276 1 0 205 chain 23440 chr6_GL000254v2_alt 4827813 + 2397391 2397732 THE1A 353 + 0 353 51692 62 37 49 242 chain 5411 chr6_GL000254v2_alt 4827813 + 2427156 2427220 U6 107 + 37 101 83651 64 chain 15009 chr6_GL000254v2_alt 4827813 + 2441744 2441936 MER50 708 + 497 701 62258 49 0 9 55 2 0 5 0 5 81 chain 4824 chr6_GL000254v2_alt 4827813 + 2511259 2511346 MER50B 698 + 483 568 86580 36 0 1 5 11 10 7 2 0 26 chain 130089 chr6_GL000254v2_alt 4827813 + 2539429 2540973 LTR12C 1709 + 1 1709 14028 755 0 161 195 1 0 5 7 5 102 0 4 120 0 2 359 chain 44812 chr6_GL000254v2_alt 4827813 + 2555414 2556013 LTR43 600 + 15 600 31694 23 1 2 254 16 0 44 0 1 261 chain 9064 chr6_GL000254v2_alt 4827813 + 2556990 2557118 L1MA8 2339 + 1735 1858 72411 18 1 0 88 4 0 17 chain 6749 chr6_GL000254v2_alt 4827813 + 2558429 2558512 L1MC 810 + 638 721 78475 83 chain 42593 chr6_GL000254v2_alt 4827813 + 2559331 2559884 MER41A 554 + 0 554 33006 42 0 15 7 16 1 332 1 0 4 0 1 59 0 1 92 chain 26862 chr6_GL000254v2_alt 4827813 + 2560507 2561014 LTR10B1 532 + 0 526 46457 40 2 0 19 16 8 12 3 0 60 9 5 8 0 52 22 43 33 11 31 27 12 1 0 173 1 0 44 chain 24538 chr6_GL000254v2_alt 4827813 + 2567476 2567911 MLT2A2 560 + 0 560 49968 178 2 0 15 29 34 75 2 111 45 0 5 9 57 65 23 chain 3162 chr6_GL000254v2_alt 4827813 + 2596158 2596196 MER21-int 1364 + 940 978 98266 38 chain 54902 chr6_GL000254v2_alt 4827813 + 2618141 2622823 L1PA8A 6298 + 5455 6290 27906 34 7 8 77 3861 0 236 4 16 124 0 1 24 1 2 205 3 1 8 3 4 4 1 0 46 3 4 41 chain 2948 chr6_GL000254v2_alt 4827813 + 2625418 2625486 L1PREC2 3366 + 1229 1299 100381 18 1 2 18 15 16 16 chain 9186 chr6_GL000254v2_alt 4827813 + 2667256 2667382 L1PA13 3608 + 3328 3448 72150 7 1 0 56 1 0 5 2 0 45 2 0 7 chain 63532 chr6_GL000254v2_alt 4827813 + 2670915 2671687 SVA_B 1603 + 886 1603 25519 27 47 0 8 4 0 12 1 0 30 4 0 92 0 1 547 chain 71892 chr6_GL000254v2_alt 4827813 + 2684554 2685490 L1PA5 6144 + 5011 6144 23569 479 42 271 49 0 1 70 35 0 72 0 2 189 chain 60794 chr6_GL000254v2_alt 4827813 + 2702441 2703252 L1PA8A 6298 + 5455 6289 26156 34 10 12 10 0 1 34 1 18 16 1 0 476 1 4 185 3 4 40 chain 18107 chr6_GL000254v2_alt 4827813 + 2809688 2810023 THE1B 368 + 9 368 58560 35 1 16 114 74 79 53 0 3 46 2 3 10 chain 25700 chr6_GL000254v2_alt 4827813 + 2836505 2836805 AluSp 311 + 1 304 48171 140 0 3 160 chain 25044 chr6_GL000254v2_alt 4827813 + 2852040 2852422 LTR3A 482 + 27 420 49199 125 14 19 108 7 8 20 5 6 67 5 7 16 0 2 15 chain 18408 chr6_GL000254v2_alt 4827813 + 2864086 2864445 L1MA8 2339 + 1847 2188 58227 85 5 1 25 4 5 46 1 0 36 1 6 18 70 50 38 2 3 28 chain 11268 chr6_GL000254v2_alt 4827813 + 3113225 3113368 LTR7B 505 + 0 164 68133 108 0 10 21 0 11 14 chain 3085 chr6_GL000254v2_alt 4827813 + 3194564 3194599 LTR12C 1709 + 683 718 98919 35 chain 9226 chr6_GL000254v2_alt 4827813 + 3235742 3235970 L1MB3 1562 + 1260 1465 72066 17 0 2 72 1 0 16 86 64 7 2 0 27 chain 3468 chr6_GL000254v2_alt 4827813 + 3237045 3237085 MER44B 551 + 384 424 95467 40 chain 4255 chr6_GL000254v2_alt 4827813 + 3256307 3256383 MLT2C2 476 + 208 263 89799 8 21 0 47 chain 5497 chr6_GL000254v2_alt 4827813 + 3549294 3549358 L1MA3 4352 + 2970 3034 83244 64 chain 33180 chr6_GL000254v2_alt 4827813 + 3673550 3674001 LTR46 455 + 0 455 39378 30 9 10 147 1 5 116 1 0 96 1 0 14 0 1 36 chain 5223 chr6_GL000254v2_alt 4827813 + 3694641 3694705 U6 107 + 11 75 84574 64 chain 11321 chr6_GL000254v2_alt 4827813 + 3704097 3704282 MSTC 436 + 248 423 68052 63 23 19 37 6 0 56 chain 74377 chr6_GL000254v2_alt 4827813 + 3716095 3717062 HUERS-P2-int 2744 + 1566 2512 22990 350 4 5 327 33 13 107 1 2 4 1 0 66 1 0 48 5 4 20 chain 27636 chr6_GL000254v2_alt 4827813 + 3775082 3775471 L1PA8 5853 + 5451 5853 45409 113 1 0 44 6 4 49 0 20 6 4 1 22 0 1 22 11 10 17 1 0 93 chain 45447 chr6_GL000254v2_alt 4827813 + 3793304 3793893 THE1B-int 1605 + 13 630 31341 255 0 2 160 1 26 104 5 6 64 chain 20310 chr6_GL000254v2_alt 4827813 + 3795166 3795484 THE1B 368 + 0 328 56003 107 2 3 59 2 1 22 41 51 85 chain 32469 chr6_GL000254v2_alt 4827813 + 3798412 3799008 L1PA15 4387 + 3749 4326 39971 64 52 42 36 3 1 40 1 0 101 0 1 66 6 11 14 6 5 55 1 0 21 4 0 9 1 0 41 34 31 27 3 1 11 chain 3707 chr6_GL000254v2_alt 4827813 + 3838815 3838858 LTR12D 1347 + 401 444 93564 43 chain 57326 chr6_GL000254v2_alt 4827813 + 3842645 3843322 LTR12 884 + 186 884 27150 170 0 22 382 3 2 122 chain 57059 chr6_GL000254v2_alt 4827813 + 3864792 3865506 LTR12 884 + 0 869 27249 59 0 41 22 1 26 114 0 91 25 3 1 490 chain 54364 chr6_GL000254v2_alt 4827813 + 3887091 3887714 L1PA5 6144 + 4301 4923 28098 6 1 0 557 1 0 6 0 1 52 chain 29408 chr6_GL000254v2_alt 4827813 + 3948240 3948559 L1PA4 6152 + 4267 4586 42722 319 chain 129869 chr6_GL000254v2_alt 4827813 + 3968871 3970761 THE1A-int 1579 + 17 1574 14055 49 0 1 435 0 1 73 0 1 693 337 0 74 0 1 229 chain 27042 chr6_GL000254v2_alt 4827813 + 3970766 3971120 THE1A 353 + 0 353 46209 111 10 9 233 chain 163160 chr6_GL000254v2_alt 4827813 + 3990922 3994247 L1MA1 4479 + 1697 4190 11536 174 0 2 59 1 0 10 27 29 22 0 1 16 4 3 65 0 6 77 4 0 119 1 2 142 9 10 103 28 1 69 5 3 48 11 10 79 8 12 12 3 1 14 0 1 17 1 0 16 1 0 138 1 0 27 2 0 9 0 1 165 2 0 39 0 14 38 1 0 12 5 0 28 0 1 24 5 0 29 9 29 6 0 7 6 7 0 106 16 14 32 0 2 59 0 1 107 1 0 25 2 0 16 809 0 74 1 0 17 2 0 13 1 0 88 9 5 89 0 1 36 1 0 29 2 0 44 1 0 11 23 15 13 chain 30878 chr6_GL000254v2_alt 4827813 + 3997530 3998002 MLT2A2 560 + 1 560 41244 5 1 0 117 1 0 46 12 11 12 50 129 81 0 11 147 chain 27900 chr6_GL000254v2_alt 4827813 + 4004503 4004970 L1PA8 5853 + 5422 5853 45038 142 1 0 45 3 1 35 38 8 29 27 25 12 0 1 20 2 1 19 10 9 84 chain 43204 chr6_GL000254v2_alt 4827813 + 4033205 4033736 L1PA7 6471 + 5759 6292 32641 83 5 6 106 6 7 331 chain 39053 chr6_GL000254v2_alt 4827813 + 4074955 4075485 MER9a1 513 + 0 513 35316 46 39 0 3 1 0 179 17 39 30 0 1 215 chain 56664 chr6_GL000254v2_alt 4827813 + 4081454 4082294 L1PA13 3608 + 218 1029 27371 73 2 0 115 34 32 7 2 0 15 27 8 12 2 1 19 3 1 15 2 0 11 6 5 8 0 1 88 2 1 364 0 2 33 chain 85288 chr6_GL000254v2_alt 4827813 + 4086615 4087781 L1PA11 4918 + 3401 4578 20573 257 4 3 35 1 0 443 0 1 119 0 1 50 0 4 17 1 5 58 1 0 13 2 0 68 19 16 17 4 0 11 6 22 13 1 0 13 2 0 11 chain 5358 chr6_GL000254v2_alt 4827813 + 4263446 4263574 MSTD 398 + 0 132 83918 15 53 57 60 chain 43401 chr6_GL000254v2_alt 4827813 + 4345802 4346341 THE1B-int 1605 + 0 587 32505 162 0 21 249 0 25 8 0 2 120 chain 256782 chr6_GL000254v2_alt 4827813 + 4351090 4355579 HERVK22-int 3844 + 15 3815 8064 23 3 0 194 0 1 289 0 1 45 1 4 107 4 5 16 2 0 372 4 1 113 9 1 341 0 1 30 0 4 9 26 22 369 0 4 82 1 0 330 9 7 276 0 1 334 1 2 49 1 0 66 5 4 6 1 0 16 6 5 33 1 0 20 2 0 39 26 21 34 159 119 19 10 7 7 0 1 20 826 198 86 18 17 49 chain 7851 chr6_GL000254v2_alt 4827813 + 4635553 4635643 HY4 93 + 0 90 75245 90 chain 5586 chr6_GL000254v2_alt 4827813 + 4650734 4650795 MER5A 189 + 30 91 82865 61 chain 136859 chr6_GL000254v2_alt 4827813 + 4781846 4783626 HERVH-int 3825 + 1637 3825 13352 49 3 30 65 20 5 304 1 6 32 1 4 360 30 31 296 0 367 57 11 22 132 0 1 115 0 8 304 chain 28413 chr6_GL000254v2_alt 4827813 + 4787351 4787738 LTR7B 505 + 0 505 44242 105 0 10 56 12 81 37 2 1 21 1 42 88 2 1 63 chain 23372 chr6_GL000254v2_alt 4827813 + 4791186 4791522 LTR14B 630 + 228 628 51817 46 7 53 17 7 18 85 0 4 89 0 3 85 chain 22886 chr6_GL000254v2_alt 4827813 + 4805390 4805660 AluSc 308 + 9 284 52529 31 0 5 239 chain 9477 chr19_GL949750v2_alt 1066390 + 1213 1389 MER5A 189 + 11 168 71530 89 4 0 12 43 28 28 chain 82486 chr19_GL949750v2_alt 1066390 + 11133 12088 LTR13A 966 + 0 953 21131 76 0 4 582 6 0 291 chain 8842 chr19_GL949750v2_alt 1066390 + 126281 126379 BC200 147 + 5 103 72882 98 chain 5445 chr19_GL949750v2_alt 1066390 + 830988 831060 MER2B 336 + 176 248 83482 72 chain 67500 chr19_GL949750v2_alt 1066390 + 925807 926736 LTR5_Hs 974 + 0 974 24573 168 11 20 271 0 4 12 0 5 146 10 9 23 1 2 9 8 10 13 0 2 82 7 7 34 5 6 9 0 22 120 chain 24493 chr19_GL949750v2_alt 1066390 + 934824 936317 MER41A 554 + 0 387 50036 14 0 1 80 249 0 25 1 4 46 891 29 158 3 4 26 chain 19494 chr19_GL949750v2_alt 1066390 + 959269 959508 AluSp 311 + 58 297 57033 239 chain 20976 chr19_GL949750v2_alt 1066390 + 960675 960935 AluSc 308 + 28 297 55159 32 0 8 40 2 3 186 chain 16137 chr19_GL949750v2_alt 1066390 + 998865 999130 AluSc 308 + 20 298 60837 44 2 0 114 1 33 26 33 23 24 7 0 14 chain 57361 chr19_GL949750v2_alt 1066390 + 1004469 1005145 L1PA10 4194 + 3461 4150 27141 31 0 13 580 0 3 28 3 0 34 chain 3384 chr19_GL949750v2_alt 1066390 + 1018162 1018215 L1PB3 3668 + 3511 3562 96242 17 3 1 33 chain 83380 chr19_GL949750v2_alt 1066390 + 1041761 1042761 LTR5A 1029 + 0 1029 20943 13 0 4 116 1 14 621 15 21 156 0 6 78 chain 85526 chr3_KI270936v1_alt 164170 + 65615 66610 LTR5A 1029 + 3 1029 20533 56 0 2 37 0 2 27 0 14 9 7 20 859 chain 4035 chr3_KI270936v1_alt 164170 + 77333 77377 MER50 708 + 526 570 91195 44 chain 79186 chr3_KI270936v1_alt 164170 + 97296 98547 L1PA7 6471 + 5508 6461 21804 108 1 5 50 0 5 24 1 4 306 310 0 451 chain 6160 chr6_GL000255v2_alt 4606388 + 13336 13409 tRNA-Lys-AAA 73 + 0 73 80491 73 chain 6258 chr6_GL000255v2_alt 4606388 + 29979 30048 tRNA-Phe-TTY 73 + 0 69 80138 69 chain 44463 chr6_GL000255v2_alt 4606388 + 42194 42816 LTR71B 605 + 0 605 31851 127 61 52 173 3 1 163 6 0 89 chain 2947 chr6_GL000255v2_alt 4606388 + 62466 62497 U2 167 + 0 31 100392 31 chain 193658 chr6_GL000255v2_alt 4606388 + 95563 97821 L1PA6 6164 + 3939 6162 9942 423 0 4 283 1 0 679 10 0 429 24 0 396 4 0 9 chain 405793 chr6_GL000255v2_alt 4606388 + 115801 120489 L1PA5 6144 + 1436 6129 5072 664 0 3 67 2 0 42 1 0 101 9 7 876 1 0 1145 0 4 415 0 1 967 0 1 190 0 1 72 5 6 131 chain 8544 chr6_GL000255v2_alt 4606388 + 123457 123560 MER57A1 433 + 325 428 73578 103 chain 2737 chr6_GL000255v2_alt 4606388 + 130638 130716 MER39 703 + 449 528 102066 17 35 36 26 chain 7021 chr6_GL000255v2_alt 4606388 + 146969 147042 tRNA-Arg-CGG 73 + 0 73 77525 73 chain 8044 chr6_GL000255v2_alt 4606388 + 206634 206740 tRNA-Leu-TTG 101 + 0 101 74765 40 2 0 9 6 3 49 chain 4220 chr6_GL000255v2_alt 4606388 + 210155 210199 tRNA-Met_ 45 + 0 44 90007 44 chain 6881 chr6_GL000255v2_alt 4606388 + 216609 216682 tRNA-Lys-AAA 73 + 0 73 78025 73 chain 138100 chr6_GL000255v2_alt 4606388 + 223243 224944 LTR12C 1709 + 0 1709 13259 104 5 4 250 0 1 58 1 2 268 0 1 149 1 0 240 0 6 28 1 0 6 2 0 107 0 4 481 chain 383541 chr6_GL000255v2_alt 4606388 + 227087 233739 L1PB1 5432 + 34 5424 5419 18 1 2 250 1 2 258 299 0 244 0 2 168 1 0 107 0 1 142 0 2 86 341 332 175 1 0 458 0 2 210 7 0 53 0 4 280 625 0 309 0 1 28 7 0 190 0 1 124 1 5 122 1 3 113 5 6 107 10 14 284 0 2 99 0 1 266 1 2 110 14 9 81 0 1 96 1 0 99 2 1 22 0 1 176 1 2 9 3 0 13 8 7 13 1 0 9 343 13 51 2 1 11 3 13 36 1 0 12 0 6 13 48 34 24 1 0 21 1 0 13 2 1 15 1 0 4 chain 6975 chr6_GL000255v2_alt 4606388 + 247776 247848 tRNA-Glu-GAG_ 72 + 0 72 77693 72 chain 20433 chr6_GL000255v2_alt 4606388 + 253428 253663 AluSp 311 + 5 239 55847 106 2 1 127 chain 7808 chr6_GL000255v2_alt 4606388 + 254579 254661 tRNA-Leu-CTY 82 + 0 82 75354 82 chain 8214 chr6_GL000255v2_alt 4606388 + 275962 276196 L1MC1 2226 + 1918 2098 74370 61 18 13 47 93 44 15 chain 17399 chr6_GL000255v2_alt 4606388 + 281130 281440 LTR12C 1709 + 773 1086 59357 56 0 81 133 78 0 43 chain 7108 chr6_GL000255v2_alt 4606388 + 312090 312294 L1MA10 1535 + 1329 1501 77230 59 42 25 24 51 36 28 chain 45792 chr6_GL000255v2_alt 4606388 + 334041 334925 L1PB1 5432 + 3934 4505 31171 385 307 0 20 7 0 78 0 1 87 chain 3758 chr6_GL000255v2_alt 4606388 + 334925 335010 L1PB1 5432 + 4506 4585 93143 16 7 11 18 2 1 14 9 0 19 chain 17296 chr6_GL000255v2_alt 4606388 + 335011 335267 L1PB1 5432 + 4585 4838 59464 41 3 0 143 1 0 28 0 1 7 16 16 17 chain 40253 chr6_GL000255v2_alt 4606388 + 335267 335892 L1PB1 5432 + 4839 5414 34473 264 1 2 11 21 0 22 1 0 9 1 0 11 15 9 52 1 0 10 11 10 42 1 0 17 15 0 29 7 4 15 2 0 24 1 0 22 0 3 9 1 0 10 chain 20632 chr6_GL000255v2_alt 4606388 + 344354 344641 L1PA7 6471 + 6177 6466 55585 96 0 1 34 15 16 122 8 8 12 chain 30098 chr6_GL000255v2_alt 4606388 + 421843 422202 L1P1 4361 + 3334 3691 41951 349 2 0 8 chain 4048 chr6_GL000255v2_alt 4606388 + 429208 429251 L1PA2 6032 + 5725 5768 91090 43 chain 39133 chr6_GL000255v2_alt 4606388 + 452645 453127 MER9a3 513 + 0 485 35263 18 0 2 90 0 1 142 6 5 175 0 1 51 chain 3371 chr6_GL000255v2_alt 4606388 + 457724 457761 L1PA15 4387 + 2264 2301 96381 37 chain 75988 chr6_GL000255v2_alt 4606388 + 482892 483978 THE1C-int 1605 + 497 1598 22576 176 94 88 24 3 11 151 9 8 218 1 11 110 0 3 97 0 1 106 0 1 37 1 0 59 chain 9622 chr6_GL000255v2_alt 4606388 + 499098 499204 L1PA2 6032 + 5926 6032 71214 106 chain 2947 chr6_GL000255v2_alt 4606388 + 720375 720406 U2 167 + 0 31 100391 31 chain 53120 chr6_GL000255v2_alt 4606388 + 739541 740137 L1PA4 6152 + 5543 6138 28526 349 1 0 246 chain 3755 chr6_GL000255v2_alt 4606388 + 805259 805303 MER81 114 + 1 45 93179 44 chain 64720 chr6_GL000255v2_alt 4606388 + 823713 824489 LTR17 781 + 0 781 25256 256 0 1 70 0 1 101 1 2 83 0 1 56 0 1 209 chain 3823 chr6_GL000255v2_alt 4606388 + 858116 858191 LTR39 781 + 464 539 92690 31 7 8 23 4 3 10 chain 4874 chr6_GL000255v2_alt 4606388 + 860855 860914 Tigger2b_Pri 1066 + 52 112 86298 22 0 1 37 chain 4701 chr6_GL000255v2_alt 4606388 + 880276 880346 L1MC1 2226 + 2129 2196 87261 6 1 0 17 1 0 32 1 0 12 chain 4440 chr6_GL000255v2_alt 4606388 + 917665 917737 MER45C 884 + 80 153 88656 53 7 8 12 chain 22951 chr6_GL000255v2_alt 4606388 + 945102 945381 AluSp 311 + 0 284 52438 19 0 1 83 0 4 177 chain 11740 chr6_GL000255v2_alt 4606388 + 956650 956981 L1PB1 5432 + 5120 5424 67332 18 1 0 9 16 11 9 2 0 52 1 0 18 24 23 20 1 0 16 32 21 10 4 5 14 2 0 6 10 10 8 1 0 21 1 0 10 1 0 19 1 0 4 chain 8315 chr6_GL000255v2_alt 4606388 + 1013413 1013514 HY3 101 + 0 101 74123 101 chain 57889 chr6_GL000255v2_alt 4606388 + 1037800 1038610 Charlie9 784 + 0 784 27002 33 1 0 10 0 1 110 1 0 41 0 1 256 10 6 4 1 0 8 1 0 4 1 0 4 1 0 6 5 0 5 1 0 4 1 0 15 13 0 184 0 2 90 chain 6594 chr6_GL000255v2_alt 4606388 + 1038678 1038767 L1PA10 4194 + 4064 4150 78993 53 3 0 33 chain 496164 chr6_GL000255v2_alt 4606388 + 1042773 1048552 L1PA5 6144 + 14 5873 3261 100 7 21 13 25 11 346 1 2 134 0 1 2601 0 8 33 0 1 645 1 2 415 0 4 110 0 2 423 11 9 131 5 7 202 0 60 12 0 1 502 0 1 62 chain 55286 chr6_GL000255v2_alt 4606388 + 1049028 1049857 Charlie9 784 + 0 784 27787 32 0 1 119 1 0 35 13 7 120 10 9 134 15 4 9 1 0 8 1 0 6 5 0 8 3 1 10 23 5 276 chain 4778 chr6_GL000255v2_alt 4606388 + 1049930 1050026 L1PA10 4194 + 4069 4159 86803 7 3 0 27 6 7 7 3 0 33 1 0 9 chain 3063 chr6_GL000255v2_alt 4606388 + 1081170 1081214 LTR16B2 458 + 159 204 99197 11 1 2 32 chain 58283 chr6_GL000255v2_alt 4606388 + 1083842 1084667 Charlie9 784 + 0 784 26872 32 0 1 150 16 0 19 9 10 178 0 8 58 8 0 5 3 0 9 1 0 7 2 0 7 1 0 9 1 0 10 20 5 29 1 0 179 3 0 68 chain 6917 chr6_GL000255v2_alt 4606388 + 1095223 1095323 Charlie12 129 + 30 129 77896 29 6 7 31 1 0 5 1 0 27 chain 36071 chr6_GL000255v2_alt 4606388 + 1108133 1108683 LTR10F 562 + 0 535 37358 111 0 28 89 0 3 31 83 37 182 0 1 16 3 2 35 chain 1987 chr6_GL000255v2_alt 4606388 + 1108364 1108408 LTR10F 562 + 147 191 79922 44 chain 2932 chr6_GL000255v2_alt 4606388 + 1174755 1174799 LTR16B2 458 + 159 204 100572 11 1 2 32 chain 52985 chr6_GL000255v2_alt 4606388 + 1176616 1177444 Charlie9 784 + 0 784 28582 30 1 2 122 1 0 33 15 7 110 26 30 123 43 25 7 1 0 4 1 0 10 27 5 197 0 2 77 chain 3049 chr6_GL000255v2_alt 4606388 + 1188504 1188539 MER30B 195 + 16 51 99308 35 chain 34148 chr6_GL000255v2_alt 4606388 + 1191974 1192432 Charlie9 784 + 0 453 38603 24 0 1 6 0 1 119 2 1 14 0 1 20 13 7 133 1 0 126 chain 3049 chr6_GL000255v2_alt 4606388 + 1201776 1201811 MER30B 195 + 16 51 99307 35 chain 105813 chr6_GL000255v2_alt 4606388 + 1217923 1219241 L1PA7 6471 + 5179 6461 17589 422 0 5 8 1 0 338 9 1 29 0 1 153 0 1 62 39 3 41 0 2 216 chain 145451 chr6_GL000255v2_alt 4606388 + 1233853 1235487 L1PA4 6152 + 4502 6136 12661 1634 chain 167966 chr6_GL000255v2_alt 4606388 + 1280764 1283321 L1PB1 5432 + 3093 5360 11218 170 0 1 275 0 3 194 11 1 20 1 0 558 0 1 124 1 0 64 1 2 120 4 0 218 271 0 67 7 6 41 10 3 53 0 2 84 0 24 14 1 0 8 1 0 12 5 1 9 11 9 43 2 1 15 1 0 44 1 0 16 1 0 6 59 44 14 chain 3115 chr6_GL000255v2_alt 4606388 + 1304842 1304892 L1MB7 1623 + 884 935 98654 15 6 7 29 chain 19984 chr6_GL000255v2_alt 4606388 + 1320423 1320787 Tigger2a 444 + 0 397 56404 63 37 40 5 3 0 22 10 32 62 0 5 29 14 4 14 0 5 60 0 11 45 chain 4007 chr6_GL000255v2_alt 4606388 + 1374934 1374985 MLT2D 439 + 4 55 91400 51 chain 3918 chr6_GL000255v2_alt 4606388 + 1378480 1378534 MER53 195 - 12 65 91985 6 1 0 47 chain 70311 chr6_GL000255v2_alt 4606388 + 1395006 1395844 L1PA7 6471 + 5617 6457 23914 152 0 1 537 8 9 141 chain 4035 chr6_GL000255v2_alt 4606388 + 1406384 1406513 MIR 256 + 54 195 91185 19 65 77 45 chain 413894 chr6_GL000255v2_alt 4606388 + 1503067 1507839 L1PA5 6144 + 607 5511 4975 5 0 2 77 7 0 72 0 128 157 1 0 5 0 1 2110 1 0 342 1 2 174 0 1 658 0 4 27 0 2 919 0 1 28 0 1 188 chain 4719 chr6_GL000255v2_alt 4606388 + 1611611 1611668 MER20 218 + 98 155 87136 57 chain 126952 chr6_GL000255v2_alt 4606388 + 1640304 1642090 L1PB2 3958 + 1118 2874 14422 85 0 1 50 1 0 25 6 7 55 0 2 125 6 9 105 5 4 11 5 4 43 1 4 121 0 1 373 7 8 167 4 5 111 0 1 47 54 12 368 0 1 11 chain 98791 chr6_GL000255v2_alt 4606388 + 1662191 1663428 THE1A-int 1579 + 341 1579 18435 851 1 2 385 chain 79374 chr6_GL000255v2_alt 4606388 + 1666389 1667336 LTR13_ 950 + 0 950 21769 579 2 1 277 0 4 89 chain 69717 chr6_GL000255v2_alt 4606388 + 1668198 1669174 L1PREC2 3366 + 1287 2295 24069 23 1 0 194 0 11 309 19 22 5 3 0 16 3 4 16 2 0 5 1 3 230 0 8 113 9 22 27 chain 202239 chr6_GL000255v2_alt 4606388 + 1680448 1683488 L1PA11 4918 + 1644 4517 9629 153 1 0 15 5 2 306 0 4 136 0 4 49 0 1 204 0 3 214 4 7 375 1 8 11 32 155 42 1 5 62 1 5 105 2 0 152 320 0 34 1 0 89 5 6 384 0 1 152 5 0 65 2 1 13 12 11 51 7 21 18 2 0 9 chain 507978 chr6_GL000255v2_alt 4606388 + 1685372 1691505 L1PA6 6164 + 0 6159 2850 128 14 0 70 3 4 307 2 1 418 0 25 197 29 38 501 1 0 643 1 2 776 3 0 79 0 1 435 0 1 77 3 1 975 8 7 771 9 10 17 0 1 512 13 14 77 0 7 64 chain 38906 chr6_GL000255v2_alt 4606388 + 1726776 1727295 L1PBa 3878 + 891 1420 35420 63 4 8 22 1 6 97 0 1 4 3 2 277 3 4 45 chain 200362 chr6_GL000255v2_alt 4606388 + 1728964 1734653 L1PB1 5432 + 2253 5422 9710 183 2 3 11 3 2 46 1 2 322 2435 247 210 304 0 332 0 2 27 0 1 79 3 0 6 9 14 623 24 23 100 0 1 16 0 1 50 2 4 68 3 0 55 0 1 32 1 0 88 5 4 189 32 32 71 19 17 19 1 0 10 1 0 13 6 2 9 2 0 52 2 1 16 6 5 37 2 1 16 2 0 10 5 1 5 5 0 14 26 21 23 1 0 22 1 0 12 1 0 11 1 0 7 chain 135614 chr6_GL000255v2_alt 4606388 + 1729588 1731098 SVA_D 2077 + 42 2076 13476 570 1 0 184 0 40 80 6 495 66 4 0 599 chain 10465 chr6_GL000255v2_alt 4606388 + 1740175 1740428 L1PB1 5432 + 5023 5219 69476 75 58 10 6 1 0 24 8 6 14 5 1 9 4 2 49 chain 9482 chr6_GL000255v2_alt 4606388 + 1740429 1740665 L1PB1 5432 + 5219 5430 71514 18 2 1 42 1 0 16 4 0 15 9 0 15 9 6 11 18 16 9 3 2 23 1 0 11 1 0 14 1 0 8 1 0 4 chain 13441 chr6_GL000255v2_alt 4606388 + 1769392 1769566 MER4A1 472 + 0 177 64401 99 1 3 29 0 1 45 chain 92037 chr6_GL000255v2_alt 4606388 + 1772884 1774289 LTR12D 1347 + 0 1347 19335 297 7 36 36 11 12 10 2 5 140 74 25 6 2 0 132 14 7 156 7 4 74 1 0 80 4 0 3 23 0 26 1 0 34 1 0 264 chain 2749 chr6_GL000255v2_alt 4606388 + 1773387 1773461 LTR12D 1347 + 567 678 80344 13 1 38 60 chain 498586 chr6_GL000255v2_alt 4606388 + 1775909 1782058 L1PA6 6164 + 13 6162 3179 369 38 32 4 0 1 30 19 0 7 0 4 107 8 7 213 0 17 378 0 3 668 0 1 177 6 0 153 7 9 141 2 1 16 32 22 469 1 3 512 0 1 231 76 76 49 0 1 229 1 0 48 0 2 514 0 2 384 1 2 335 0 1 83 1 0 218 3 6 143 0 5 313 0 8 8 2 1 6 7 0 135 1 0 4 chain 8341 chr6_GL000255v2_alt 4606388 + 1794340 1794451 L1MA7 2200 + 1520 1630 74051 33 1 0 77 chain 20517 chr6_GL000255v2_alt 4606388 + 1844465 1844701 AluY 311 + 62 299 55761 70 0 1 166 chain 6612 chr6_GL000255v2_alt 4606388 + 2098447 2098698 MER61C 433 + 32 354 78937 8 2 0 25 21 111 13 0 1 5 19 15 23 62 64 12 15 0 6 1 0 39 chain 19529 chr6_GL000255v2_alt 4606388 + 2119425 2119669 7SK 245 + 0 245 56985 79 1 2 164 chain 41143 chr6_GL000255v2_alt 4606388 + 2129076 2129923 MER41A 554 + 28 554 33883 285 325 0 95 0 4 142 chain 383391 chr6_GL000255v2_alt 4606388 + 2221533 2226574 HERVL-int 5654 + 885 5654 5423 301 4 14 126 12 13 385 0 2 149 0 3 150 316 3 110 0 4 420 0 1 349 0 3 511 8 7 27 0 2 6 3 1 197 9 10 132 4 5 23 15 18 432 18 23 112 6 7 29 0 2 89 0 3 670 0 1 105 0 1 323 chain 29020 chr6_GL000255v2_alt 4606388 + 2226574 2226983 MLT2A1 477 + 0 477 43293 146 0 1 21 5 2 9 0 1 24 0 1 54 0 28 97 19 59 34 chain 107523 chr6_GL000255v2_alt 4606388 + 2255617 2256919 LTR12C 1709 + 0 1709 17384 261 0 25 364 0 278 184 1 0 5 3 1 106 0 4 127 0 1 59 0 102 192 chain 3978 chr6_GL000255v2_alt 4606388 + 2272943 2272993 LTR12C 1709 + 878 928 57708 50 chain 25713 chr6_GL000255v2_alt 4606388 + 2272993 2273374 LTR12C 1709 + 650 997 48148 187 1 0 79 0 16 49 49 0 16 chain 141566 chr6_GL000255v2_alt 4606388 + 2276144 2277838 LTR12C 1709 + 0 1709 12979 479 1 17 341 1 0 274 1 0 6 5 3 104 0 4 276 1 0 205 chain 23449 chr6_GL000255v2_alt 4606388 + 2311598 2311939 THE1A 353 + 0 353 51681 62 37 49 242 chain 5411 chr6_GL000255v2_alt 4606388 + 2341046 2341110 U6 107 + 37 101 83650 64 chain 15933 chr6_GL000255v2_alt 4606388 + 2355650 2355846 MER50 708 + 496 701 61112 50 0 9 146 chain 4824 chr6_GL000255v2_alt 4606388 + 2425177 2425264 MER50B 698 + 483 568 86579 36 0 1 5 11 10 7 2 0 26 chain 128713 chr6_GL000255v2_alt 4606388 + 2453306 2454846 LTR12C 1709 + 1 1709 14190 690 0 159 65 0 2 195 13 10 102 0 4 118 0 2 105 16 20 236 chain 47644 chr6_GL000255v2_alt 4606388 + 2469204 2469820 LTR43 600 + 0 600 30421 294 16 0 306 chain 4242 chr6_GL000255v2_alt 4606388 + 2470787 2470922 L1MA8 2339 + 1725 1858 89861 28 1 0 4 0 3 21 64 60 17 chain 6657 chr6_GL000255v2_alt 4606388 + 2472244 2472327 L1MC 810 + 638 721 78784 83 chain 42593 chr6_GL000255v2_alt 4606388 + 2473147 2473700 MER41A 554 + 0 554 33005 42 0 15 7 16 1 332 1 0 4 0 1 59 0 1 92 chain 23549 chr6_GL000255v2_alt 4606388 + 2485960 2486249 AluSp 311 + 6 293 51504 276 2 0 11 chain 55590 chr6_GL000255v2_alt 4606388 + 2530829 2535511 L1PA8A 6298 + 5455 6290 27692 34 7 8 78 3861 0 237 2 14 124 0 1 24 1 2 205 3 1 62 10 11 34 chain 2948 chr6_GL000255v2_alt 4606388 + 2538403 2538471 L1PREC2 3366 + 1229 1299 100380 18 1 2 18 15 16 16 chain 8802 chr6_GL000255v2_alt 4606388 + 2581981 2582107 L1PA13 3608 + 3328 3448 72987 7 1 0 56 1 0 5 2 0 45 2 0 7 chain 96635 chr6_GL000255v2_alt 4606388 + 2598084 2599212 L1PA5 6144 + 5011 6142 18698 355 0 1 586 0 2 187 chain 60344 chr6_GL000255v2_alt 4606388 + 2616153 2616964 L1PA8A 6298 + 5455 6289 26277 34 10 12 10 0 1 34 1 18 16 1 0 476 1 4 185 3 4 40 chain 25044 chr6_GL000255v2_alt 4606388 + 2765977 2766359 LTR3A 482 + 27 420 49198 125 14 19 108 7 8 20 5 6 67 5 7 16 0 2 15 chain 18408 chr6_GL000255v2_alt 4606388 + 2778005 2778364 L1MA8 2339 + 1847 2188 58226 85 5 1 25 4 5 46 1 0 36 1 6 18 70 50 38 2 3 28 chain 9226 chr6_GL000255v2_alt 4606388 + 3149645 3149873 L1MB3 1562 + 1260 1465 72065 17 0 2 72 1 0 16 86 64 7 2 0 27 chain 3468 chr6_GL000255v2_alt 4606388 + 3150945 3150985 MER44B 551 + 384 424 95466 40 chain 5414 chr6_GL000255v2_alt 4606388 + 3170205 3170283 MLT2C2 476 + 182 263 83635 28 3 6 47 chain 5497 chr6_GL000255v2_alt 4606388 + 3430476 3430540 L1MA3 4352 + 2970 3034 83243 64 chain 46238 chr6_GL000255v2_alt 4606388 + 3488629 3489140 L1PA4 6152 + 4485 5015 30945 315 0 19 196 chain 280200 chr6_GL000255v2_alt 4606388 + 3494287 3498547 L1PB1 5432 + 1743 5427 7415 679 0 4 73 0 1 8 0 5 64 0 5 248 0 4 8 3 0 157 9 1 7 5 0 187 0 2 232 1 6 51 0 1 6 0 1 121 0 1 4 2 1 86 1 0 17 26 8 699 0 1 46 27 32 115 3 0 158 564 16 287 20 21 9 3 0 23 1 0 9 1 0 9 9 5 7 2 0 9 0 3 40 2 1 16 1 0 42 0 8 9 14 1 30 2 0 5 1 0 14 2 0 24 1 0 21 4 3 10 1 0 14 1 0 5 1 0 4 chain 23597 chr6_GL000255v2_alt 4606388 + 3500367 3500742 MSTA 426 + 0 426 51436 104 26 54 78 32 29 33 0 26 102 chain 4437 chr6_GL000255v2_alt 4606388 + 3500742 3500793 MSTA-int 1630 + 0 51 88692 51 chain 392819 chr6_GL000255v2_alt 4606388 + 3502923 3508189 L1PA8 5853 + 50 5853 5274 15 8 6 11 1 0 13 52 13 60 0 3 134 0 4 153 0 1 166 308 0 25 8 5 20 0 1 337 1 0 128 0 1 871 2 1 62 0 1 160 0 863 105 8 6 518 0 3 300 0 1 20 0 2 23 0 6 282 1 0 317 9 17 85 3 0 99 2 1 95 0 1 108 0 1 397 0 10 59 3 2 46 2 0 54 1 0 5 5 6 6 1 0 9 9 8 44 2 1 19 4 3 90 chain 45832 chr6_GL000255v2_alt 4606388 + 3528367 3528962 PABL_A 660 + 0 620 31139 96 0 15 13 0 2 14 0 1 78 1 0 60 3 0 14 2 13 314 chain 27293 chr6_GL000255v2_alt 4606388 + 3531711 3531995 AluYa5 310 + 16 300 45833 284 chain 33302 chr6_GL000255v2_alt 4606388 + 3554828 3555279 LTR46 455 + 0 455 39256 30 9 10 147 1 5 116 1 0 96 1 0 14 0 1 36 chain 5223 chr6_GL000255v2_alt 4606388 + 3575930 3575994 U6 107 + 11 75 84573 64 chain 11699 chr6_GL000255v2_alt 4606388 + 3585389 3585573 MSTC 436 + 248 422 67396 63 23 19 37 6 0 55 chain 75610 chr6_GL000255v2_alt 4606388 + 3597359 3598334 HUERS-P2-int 2744 + 1558 2512 22686 358 4 5 340 20 0 107 1 2 4 1 0 66 1 0 48 5 4 20 chain 37703 chr6_GL000255v2_alt 4606388 + 3633516 3633914 L1HS 6032 + 5633 6031 36272 398 chain 27636 chr6_GL000255v2_alt 4606388 + 3657173 3657562 L1PA8 5853 + 5451 5853 45408 113 1 0 44 6 4 49 0 20 6 4 1 22 0 1 22 11 10 17 1 0 93 chain 45447 chr6_GL000255v2_alt 4606388 + 3675508 3676097 THE1B-int 1605 + 13 630 31340 255 0 2 160 1 26 104 5 6 64 chain 20310 chr6_GL000255v2_alt 4606388 + 3677370 3677688 THE1B 368 + 0 328 56002 107 2 3 59 2 1 22 41 51 85 chain 32469 chr6_GL000255v2_alt 4606388 + 3680616 3681212 L1PA15 4387 + 3749 4326 39970 64 52 42 36 3 1 40 1 0 101 0 1 66 6 11 14 6 5 55 1 0 21 4 0 9 1 0 41 34 31 27 3 1 11 chain 88141 chr6_GL000255v2_alt 4606388 + 3734619 3735593 LTR5_Hs 974 + 0 974 20023 974 chain 37114 chr6_GL000255v2_alt 4606388 + 3736861 3737390 LTR12 884 + 0 869 36671 53 0 239 89 2 0 242 35 105 23 0 33 85 chain 222916 chr6_GL000255v2_alt 4606388 + 3737480 3740424 HERV9-int 5642 + 0 3070 8959 338 13 14 39 0 1 89 2 4 107 29 28 85 8 12 69 6 5 83 4 3 226 83 0 285 6 207 93 6 1 6 0 1 458 9 4 67 1 0 526 0 12 116 7 8 183 chain 55428 chr6_GL000255v2_alt 4606388 + 3741542 3742279 LTR12 884 + 0 869 27741 209 6 114 17 2 3 13 0 22 62 8 7 12 1 2 193 0 1 214 chain 10180 chr6_GL000255v2_alt 4606388 + 3800244 3800374 L1MA7 2200 + 1410 1540 70052 130 chain 32953 chr6_GL000255v2_alt 4606388 + 3811146 3811592 MER4D1 891 + 439 891 39548 83 4 0 76 4 13 68 1 3 139 1 0 70 chain 54944 chr6_GL000255v2_alt 4606388 + 3815790 3816497 LTR30 714 + 0 704 27895 12 0 1 201 2 1 28 1 2 9 1 0 94 1 0 183 16 15 146 1 0 12 chain 28336 chr6_GL000255v2_alt 4606388 + 3866025 3866368 THE1A 353 + 0 342 44360 110 1 0 232 chain 129077 chr6_GL000255v2_alt 4606388 + 3866379 3868290 THE1A-int 1579 + 0 1574 14135 15 0 2 49 0 1 435 0 1 73 0 1 691 341 0 301 1 0 5 chain 29223 chr6_GL000255v2_alt 4606388 + 3868298 3868649 THE1A 353 + 3 353 43009 107 1 0 243 chain 163377 chr6_GL000255v2_alt 4606388 + 3886638 3889275 L1MA1 4479 + 1697 4190 11522 34 16 0 7 0 16 198 1 0 5 11 14 22 0 1 26 1 2 5 1 0 54 0 6 75 4 0 118 1 2 142 9 10 103 28 1 64 5 8 48 11 10 79 11 15 9 3 1 15 0 1 7 10 9 16 1 0 138 1 0 27 2 0 9 0 1 165 2 0 46 6 7 38 1 0 12 5 0 53 5 0 25 1 21 11 121 14 6 7 0 135 0 1 16 0 2 59 0 1 108 0 1 4 2 0 19 2 0 16 1 0 74 1 0 17 2 0 13 1 0 88 9 5 89 0 1 36 1 0 29 2 0 44 1 0 11 23 15 13 chain 30300 chr6_GL000255v2_alt 4606388 + 3892548 3893020 MLT2A2 560 + 1 560 41760 5 1 0 118 1 0 45 12 11 12 50 129 78 3 14 147 chain 29852 chr6_GL000255v2_alt 4606388 + 3899540 3900007 L1PA8 5853 + 5422 5853 42181 142 1 0 44 2 0 37 38 8 29 27 25 12 0 1 20 2 1 22 1 0 90 chain 43156 chr6_GL000255v2_alt 4606388 + 3928073 3928604 L1PA7 6471 + 5759 6292 32679 83 5 6 106 6 7 331 chain 14711 chr6_GL000255v2_alt 4606388 + 3928606 3928809 L1M1 2793 + 1889 2099 62660 119 0 4 59 4 7 21 chain 40692 chr6_GL000255v2_alt 4606388 + 3969879 3970394 MER9a1 513 + 0 513 34150 46 25 0 198 1 23 30 0 1 215 chain 57609 chr6_GL000255v2_alt 4606388 + 3976673 3977512 L1PA13 3608 + 218 1029 27078 73 2 0 115 34 32 7 2 0 14 27 9 12 2 1 19 3 1 15 2 0 11 6 5 8 0 1 88 2 1 365 0 2 32 chain 85984 chr6_GL000255v2_alt 4606388 + 3981829 3982996 L1PA11 4918 + 3401 4578 20442 257 3 2 36 1 0 563 0 1 50 0 4 18 0 4 59 6 5 7 2 0 68 2 0 12 5 4 17 4 0 11 6 22 13 1 0 13 2 0 11 chain 5358 chr6_GL000255v2_alt 4606388 + 4158713 4158841 MSTD 398 + 0 132 83917 15 53 57 60 chain 43401 chr6_GL000255v2_alt 4606388 + 4241027 4241566 THE1B-int 1605 + 0 587 32504 162 0 21 249 0 25 8 0 2 120 chain 258691 chr6_GL000255v2_alt 4606388 + 4246315 4250800 HERVK22-int 3844 + 15 3815 8006 23 3 0 194 0 1 289 0 1 45 1 4 107 4 5 16 2 0 372 4 1 113 9 1 341 0 1 426 8 12 82 1 0 330 9 7 275 0 1 335 2 3 48 1 0 66 5 4 6 1 0 16 6 5 32 1 0 21 2 0 39 15 10 45 159 119 19 10 7 28 821 198 87 17 16 49 chain 7851 chr6_GL000255v2_alt 4606388 + 4394004 4394094 HY4 93 + 0 90 75244 90 chain 5586 chr6_GL000255v2_alt 4606388 + 4409189 4409250 MER5A 189 + 30 91 82864 61 chain 16492 chr6_GL000255v2_alt 4606388 + 4455888 4456161 L1MA1 4479 + 3773 4041 60390 12 0 1 28 4 3 9 1 0 20 16 13 5 0 1 29 0 2 48 3 2 6 3 0 89 chain 137084 chr6_GL000255v2_alt 4606388 + 4540336 4542116 HERVH-int 3825 + 1637 3825 13334 49 3 30 65 20 5 304 1 6 32 1 4 360 30 31 296 0 367 57 11 22 132 0 1 115 0 8 304 chain 28413 chr6_GL000255v2_alt 4606388 + 4545840 4546227 LTR7B 505 + 0 505 44241 105 0 10 56 12 81 37 2 1 21 1 42 88 2 1 63 chain 23503 chr6_GL000255v2_alt 4606388 + 4549677 4550013 LTR14B 630 + 228 628 51588 46 7 53 17 7 18 85 0 4 89 0 3 85 chain 22886 chr6_GL000255v2_alt 4606388 + 4563857 4564127 AluSc 308 + 9 284 52528 31 0 5 239 chain 3763 chr6_GL000255v2_alt 4606388 + 4588483 4588529 MER20 218 + 87 132 93118 4 1 0 41 chain 5252 chr6_GL000255v2_alt 4606388 + 4596771 4596834 MER2 342 + 152 215 84432 63 chain 9477 chr19_GL949751v2_alt 1002683 + 1213 1389 MER5A 189 + 11 168 71529 89 4 0 12 43 28 28 chain 82486 chr19_GL949751v2_alt 1002683 + 11133 12088 LTR13A 966 + 0 953 21130 76 0 4 582 6 0 291 chain 8842 chr19_GL949751v2_alt 1002683 + 126281 126379 BC200 147 + 5 103 72881 98 chain 5445 chr19_GL949751v2_alt 1002683 + 767638 767710 MER2B 336 + 176 248 83481 72 chain 67500 chr19_GL949751v2_alt 1002683 + 862100 863029 LTR5_Hs 974 + 0 974 24572 168 11 20 271 0 4 12 0 5 146 10 9 23 1 2 9 8 10 13 0 2 82 7 7 34 5 6 9 0 22 120 chain 24493 chr19_GL949751v2_alt 1002683 + 871117 872610 MER41A 554 + 0 387 50035 14 0 1 80 249 0 25 1 4 46 891 29 158 3 4 26 chain 19494 chr19_GL949751v2_alt 1002683 + 895562 895801 AluSp 311 + 58 297 57032 239 chain 20976 chr19_GL949751v2_alt 1002683 + 896968 897228 AluSc 308 + 28 297 55158 32 0 8 40 2 3 186 chain 16137 chr19_GL949751v2_alt 1002683 + 935158 935423 AluSc 308 + 20 298 60836 44 2 0 114 1 33 26 33 23 24 7 0 14 chain 55656 chr19_GL949751v2_alt 1002683 + 940790 941438 L1PA10 4194 + 3502 4150 27679 584 0 3 27 3 0 34 chain 3384 chr19_GL949751v2_alt 1002683 + 954455 954508 L1PB3 3668 + 3511 3562 96241 17 3 1 33 chain 83380 chr19_GL949751v2_alt 1002683 + 978054 979054 LTR5A 1029 + 0 1029 20942 13 0 4 116 1 14 621 15 21 156 0 6 78 chain 85535 chr3_KI270937v1_alt 165607 + 65776 66771 LTR5A 1029 + 3 1029 20530 56 0 2 37 0 2 27 0 14 9 7 20 859 chain 4035 chr3_KI270937v1_alt 165607 + 77554 77598 MER50 708 + 526 570 91194 44 chain 79186 chr3_KI270937v1_alt 165607 + 98733 99984 L1PA7 6471 + 5508 6461 21803 108 1 5 50 0 5 24 1 4 306 310 0 451 chain 6713 chr6_GL000256v2_alt 4929269 + 19125 19197 tRNA-Ala-GCY_ 72 + 0 72 78598 72 chain 6975 chr6_GL000256v2_alt 4929269 + 29031 29103 tRNA-Ala-GCY_ 72 + 0 72 77689 72 chain 6654 chr6_GL000256v2_alt 4929269 + 35369 35443 tRNA-Thr-ACY_ 74 + 0 74 78800 74 chain 6181 chr6_GL000256v2_alt 4929269 + 38660 38732 tRNA-Ala-GCY_ 72 + 0 72 80424 72 chain 6160 chr6_GL000256v2_alt 4929269 + 57071 57144 tRNA-Lys-AAA 73 + 0 73 80490 73 chain 6258 chr6_GL000256v2_alt 4929269 + 73750 73819 tRNA-Phe-TTY 73 + 0 69 80137 69 chain 44463 chr6_GL000256v2_alt 4929269 + 85977 86599 LTR71B 605 + 0 605 31850 127 61 52 173 3 1 163 6 0 89 chain 2947 chr6_GL000256v2_alt 4929269 + 106202 106233 U2 167 + 0 31 100390 31 chain 193322 chr6_GL000256v2_alt 4929269 + 139228 141486 L1PA6 6164 + 3939 6162 9958 423 0 4 283 1 0 679 10 0 429 24 0 396 4 0 9 chain 405586 chr6_GL000256v2_alt 4929269 + 159467 164155 L1PA5 6144 + 1436 6129 5082 664 0 3 67 2 0 42 1 0 101 9 7 876 1 0 1145 0 4 415 0 1 967 0 1 190 0 1 72 5 6 131 chain 8544 chr6_GL000256v2_alt 4929269 + 167122 167225 MER57A1 433 + 325 428 73577 103 chain 2737 chr6_GL000256v2_alt 4929269 + 174301 174379 MER39 703 + 449 528 102065 17 35 36 26 chain 7021 chr6_GL000256v2_alt 4929269 + 190788 190861 tRNA-Arg-CGG 73 + 0 73 77524 73 chain 4259 chr6_GL000256v2_alt 4929269 + 194885 195266 LTR12C 1709 + 651 1004 89764 19 92 59 16 16 133 17 173 60 31 1 2 16 chain 8044 chr6_GL000256v2_alt 4929269 + 250446 250552 tRNA-Leu-TTG 101 + 0 101 74764 40 2 0 9 6 3 49 chain 4220 chr6_GL000256v2_alt 4929269 + 253970 254014 tRNA-Met_ 45 + 0 44 90006 44 chain 6881 chr6_GL000256v2_alt 4929269 + 260414 260487 tRNA-Lys-AAA 73 + 0 73 78024 73 chain 139281 chr6_GL000256v2_alt 4929269 + 267048 268750 LTR12C 1709 + 0 1709 13161 104 5 4 250 0 1 328 0 1 149 1 0 240 0 6 28 1 0 6 2 0 107 0 4 481 chain 381967 chr6_GL000256v2_alt 4929269 + 270895 277543 L1PB1 5432 + 34 5424 5451 18 1 2 250 1 2 258 299 0 244 0 2 168 1 0 107 0 1 142 0 2 86 342 332 175 1 0 458 0 2 210 7 0 53 0 4 280 623 0 309 0 1 28 7 0 190 0 1 124 1 5 122 1 3 113 5 6 107 10 14 284 0 2 99 0 1 266 1 2 110 14 9 81 0 1 96 1 0 99 2 1 22 0 1 176 1 2 9 3 0 13 8 7 13 1 0 9 340 13 51 2 1 11 3 13 36 1 0 12 0 6 13 48 34 24 1 0 21 4 3 10 2 1 15 1 0 4 chain 6975 chr6_GL000256v2_alt 4929269 + 291648 291720 tRNA-Glu-GAG_ 72 + 0 72 77692 72 chain 20433 chr6_GL000256v2_alt 4929269 + 297306 297541 AluSp 311 + 5 239 55846 106 2 1 127 chain 7808 chr6_GL000256v2_alt 4929269 + 298462 298544 tRNA-Leu-CTY 82 + 0 82 75353 82 chain 8214 chr6_GL000256v2_alt 4929269 + 319745 319979 L1MC1 2226 + 1918 2098 74369 61 18 13 47 93 44 15 chain 17255 chr6_GL000256v2_alt 4929269 + 324915 325220 LTR12C 1709 + 778 1086 59511 51 0 81 133 78 0 43 chain 7108 chr6_GL000256v2_alt 4929269 + 355869 356073 L1MA10 1535 + 1329 1501 77229 59 42 25 24 51 36 28 chain 45792 chr6_GL000256v2_alt 4929269 + 377822 378706 L1PB1 5432 + 3934 4505 31170 385 307 0 20 7 0 78 0 1 87 chain 3758 chr6_GL000256v2_alt 4929269 + 378706 378791 L1PB1 5432 + 4506 4585 93142 16 7 11 18 2 1 14 9 0 19 chain 17296 chr6_GL000256v2_alt 4929269 + 378792 379048 L1PB1 5432 + 4585 4838 59463 41 3 0 143 1 0 28 0 1 7 16 16 17 chain 39815 chr6_GL000256v2_alt 4929269 + 379048 379675 L1PB1 5432 + 4839 5414 34804 264 33 11 24 1 0 9 1 0 11 15 9 52 1 0 10 11 10 42 1 0 17 15 0 29 7 4 15 2 0 24 1 0 22 0 3 9 1 0 10 chain 20632 chr6_GL000256v2_alt 4929269 + 388137 388424 L1PA7 6471 + 6177 6466 55584 96 0 1 34 15 16 122 8 8 12 chain 30098 chr6_GL000256v2_alt 4929269 + 465621 465980 L1P1 4361 + 3334 3691 41950 349 2 0 8 chain 4048 chr6_GL000256v2_alt 4929269 + 472986 473029 L1PA2 6032 + 5725 5768 91089 43 chain 39133 chr6_GL000256v2_alt 4929269 + 496431 496913 MER9a3 513 + 0 485 35262 18 0 2 90 0 1 142 6 5 175 0 1 51 chain 3371 chr6_GL000256v2_alt 4929269 + 501510 501547 L1PA15 4387 + 2264 2301 96380 37 chain 3383 chr6_GL000256v2_alt 4929269 + 511228 511263 MER52A 1651 + 795 830 96267 35 chain 75988 chr6_GL000256v2_alt 4929269 + 526678 527764 THE1C-int 1605 + 497 1598 22575 176 94 88 24 3 11 151 9 8 218 1 11 110 0 3 97 0 1 106 0 1 37 1 0 59 chain 9622 chr6_GL000256v2_alt 4929269 + 542884 542990 L1PA2 6032 + 5926 6032 71213 106 chain 28152 chr6_GL000256v2_alt 4929269 + 563188 563646 MER4A1 472 + 0 472 44629 14 9 11 16 0 7 132 51 52 159 10 14 67 chain 30647 chr6_GL000256v2_alt 4929269 + 572395 572893 LTR19A 502 + 0 502 41424 71 0 1 61 0 1 52 38 1 15 0 36 73 1 2 63 45 46 38 0 1 41 chain 541133 chr6_GL000256v2_alt 4929269 + 582850 588998 L1PA4 6152 + 2 6151 1266 125 14 0 15 10 24 252 0 3 6 4 1 14 6 7 795 7 6 1097 0 1 4 1 0 1692 0 1 2106 chain 183547 chr6_GL000256v2_alt 4929269 + 591576 593792 L1PA7 6471 + 4233 6467 10406 443 0 4 275 1 0 367 0 1 299 0 2 53 8 0 378 0 4 134 2 3 123 1 16 132 chain 4686 chr6_GL000256v2_alt 4929269 + 605544 605599 MER52D 1964 + 1150 1205 87347 55 chain 32712 chr6_GL000256v2_alt 4929269 + 605853 606298 LTR7 482 + 0 477 39746 101 15 14 110 4 3 39 0 31 21 0 2 98 13 14 44 chain 90547 chr6_GL000256v2_alt 4929269 + 608476 609486 L1PA4 6152 + 4169 5186 19587 179 0 4 57 0 1 380 0 2 394 chain 26512 chr6_GL000256v2_alt 4929269 + 650110 650472 THE1D 372 + 0 372 46961 35 2 0 33 1 11 111 0 3 125 0 1 21 2 0 32 chain 450383 chr6_GL000256v2_alt 4929269 + 669640 675440 L1PA8 5853 + 108 5852 4385 189 23 11 128 0 1 11 8 12 210 1 2 94 25 16 189 0 6 522 1 0 6 0 1 43 2 1 284 0 1 182 3 1 195 0 1 348 0 1 4 12 0 641 6 5 97 0 1 263 0 2 94 0 5 16 23 25 247 0 1 132 10 11 263 1 0 182 25 9 10 19 0 247 0 1 55 8 4 127 5 4 553 1 0 46 2 0 57 0 1 12 2 1 13 7 6 42 2 1 19 1 0 92 chain 170713 chr6_GL000256v2_alt 4929269 + 715568 717580 L1PA7 6471 + 4459 6470 11068 1161 1 4 379 0 2 217 7 1 247 chain 2947 chr6_GL000256v2_alt 4929269 + 763917 763948 U2 167 + 0 31 100389 31 chain 53120 chr6_GL000256v2_alt 4929269 + 783086 783682 L1PA4 6152 + 5543 6138 28525 349 1 0 246 chain 3755 chr6_GL000256v2_alt 4929269 + 848804 848848 MER81 114 + 1 45 93178 44 chain 4440 chr6_GL000256v2_alt 4929269 + 961200 961272 MER45C 884 + 80 153 88655 53 7 8 12 chain 23334 chr6_GL000256v2_alt 4929269 + 988637 988944 AluSp 311 + 0 295 51873 19 0 1 83 0 4 180 17 0 8 chain 11740 chr6_GL000256v2_alt 4929269 + 1000192 1000523 L1PB1 5432 + 5120 5424 67331 18 1 0 9 16 11 9 2 0 52 1 0 18 24 23 20 1 0 16 32 21 10 4 5 14 2 0 6 10 10 8 1 0 21 1 0 10 1 0 19 1 0 4 chain 8662 chr6_GL000256v2_alt 4929269 + 1056597 1056698 HY3 101 + 0 101 73314 101 chain 57291 chr6_GL000256v2_alt 4929269 + 1080965 1081775 Charlie9 784 + 0 784 27161 33 1 0 10 0 1 110 1 0 41 0 1 256 10 6 4 1 0 8 1 0 4 1 0 4 1 0 6 5 0 5 1 0 4 1 0 15 13 0 184 0 2 90 chain 6716 chr6_GL000256v2_alt 4929269 + 1081843 1081932 L1PA10 4194 + 4064 4150 78581 53 3 0 33 chain 496087 chr6_GL000256v2_alt 4929269 + 1085937 1091973 L1PA6 6164 + 13 6153 3268 99 1 0 4 16 3 82 0 1 289 1 2 16 2 1 116 0 1 301 0 25 222 4 13 1144 1 2 855 0 1 79 0 8 28 0 1 645 1 2 415 0 4 110 0 2 423 11 9 131 5 7 202 0 60 12 0 1 502 0 1 110 0 2 209 chain 55289 chr6_GL000256v2_alt 4929269 + 1092192 1093020 Charlie9 784 + 0 784 27781 32 0 1 119 1 0 35 13 7 120 10 9 134 15 4 9 1 0 8 1 0 6 5 0 8 3 1 10 22 5 276 chain 4778 chr6_GL000256v2_alt 4929269 + 1093093 1093189 L1PA10 4194 + 4069 4159 86802 7 3 0 27 6 7 7 3 0 33 1 0 9 chain 3063 chr6_GL000256v2_alt 4929269 + 1124440 1124484 LTR16B2 458 + 159 204 99196 11 1 2 32 chain 58152 chr6_GL000256v2_alt 4929269 + 1127108 1127933 Charlie9 784 + 0 784 26919 32 0 1 150 16 0 19 9 10 178 0 8 58 8 0 5 3 0 9 1 0 7 2 0 7 1 0 9 1 0 10 20 5 29 1 0 179 3 0 68 chain 6917 chr6_GL000256v2_alt 4929269 + 1138486 1138586 Charlie12 129 + 30 129 77895 29 6 7 31 1 0 5 1 0 27 chain 38489 chr6_GL000256v2_alt 4929269 + 1151362 1151912 LTR10F 562 + 0 535 35717 232 30 5 25 27 37 182 0 1 16 3 2 35 chain 2564 chr6_GL000256v2_alt 4929269 + 1151594 1151624 LTR10F 562 + 148 178 72247 30 chain 2932 chr6_GL000256v2_alt 4929269 + 1217655 1217699 LTR16B2 458 + 159 204 100571 11 1 2 32 chain 51324 chr6_GL000256v2_alt 4929269 + 1219515 1220347 Charlie9 784 + 0 784 29113 30 1 2 122 1 0 12 41 28 78 2 1 5 0 1 25 26 30 123 6 0 4 4 0 9 1 0 6 3 1 7 5 0 8 3 1 10 26 5 198 1 3 75 chain 3049 chr6_GL000256v2_alt 4929269 + 1231407 1231442 MER30B 195 + 16 51 99306 35 chain 34990 chr6_GL000256v2_alt 4929269 + 1234844 1235302 Charlie9 784 + 0 453 38020 24 0 1 6 0 1 122 1 0 12 0 1 20 13 7 133 1 0 126 chain 3049 chr6_GL000256v2_alt 4929269 + 1244632 1244667 MER30B 195 + 16 51 99305 35 chain 106828 chr6_GL000256v2_alt 4929269 + 1260745 1262055 L1PA7 6471 + 5179 6461 17456 422 0 5 8 1 0 368 0 1 153 0 1 62 39 3 41 0 2 216 chain 147799 chr6_GL000256v2_alt 4929269 + 1276683 1278317 L1PA3long 6157 + 4508 6142 12498 1634 chain 166740 chr6_GL000256v2_alt 4929269 + 1323475 1326032 L1PB1 5432 + 3093 5360 11290 170 0 1 275 0 3 194 8 1 20 1 0 205 5 6 347 0 1 124 1 0 64 1 2 120 4 0 218 275 0 67 7 6 41 10 3 53 0 2 81 0 24 17 1 0 8 1 0 12 5 1 9 11 9 43 2 1 15 1 0 44 1 0 16 1 0 6 59 44 14 chain 28776 chr6_GL000256v2_alt 4929269 + 1329295 1329605 AluYb8 318 + 8 318 43663 310 chain 4007 chr6_GL000256v2_alt 4929269 + 1418721 1418772 MLT2D 439 + 4 55 91399 51 chain 3918 chr6_GL000256v2_alt 4929269 + 1422268 1422322 MER53 195 - 12 65 91984 6 1 0 47 chain 70769 chr6_GL000256v2_alt 4929269 + 1438809 1439647 L1PA7 6471 + 5617 6457 23809 152 0 1 537 8 9 141 chain 4035 chr6_GL000256v2_alt 4929269 + 1450180 1450309 MIR 256 + 54 195 91184 19 65 77 45 chain 466869 chr6_GL000256v2_alt 4929269 + 1546453 1551848 L1PA5 6144 + 607 6138 3934 5 0 2 77 7 0 72 0 128 157 1 0 5 0 1 2104 1 0 348 1 2 833 0 4 27 0 2 106 2 1 778 12 16 12 0 1 34 0 1 198 0 2 615 chain 4719 chr6_GL000256v2_alt 4929269 + 1654987 1655044 MER20 218 + 98 155 87135 57 chain 126616 chr6_GL000256v2_alt 4929269 + 1683687 1685473 L1PB2 3958 + 1118 2874 14462 85 0 1 50 1 0 25 6 7 55 0 2 125 6 9 105 5 4 11 5 4 43 1 4 121 0 1 373 7 8 167 4 5 111 0 1 47 54 12 368 0 1 11 chain 11903 chr6_GL000256v2_alt 4929269 + 1705371 1705526 LTR3B_ 500 + 187 343 66999 101 1 2 53 chain 99127 chr6_GL000256v2_alt 4929269 + 1705563 1706800 THE1A-int 1579 + 341 1579 18397 851 1 2 385 chain 78636 chr6_GL000256v2_alt 4929269 + 1709760 1710703 LTR13_ 950 + 0 950 21950 269 0 2 83 3 4 499 0 4 89 chain 201128 chr6_GL000256v2_alt 4929269 + 1723800 1726839 L1PA11 4918 + 1644 4517 9681 153 1 0 15 5 2 306 0 4 136 0 4 49 0 1 204 0 3 214 4 7 169 0 1 205 1 8 11 32 155 42 1 5 60 0 4 111 2 0 149 318 0 34 1 0 82 12 13 384 0 1 152 5 0 65 2 1 13 12 11 51 7 21 18 4 0 9 chain 12884 chr6_GL000256v2_alt 4929269 + 1727506 1727704 Tigger3 1187 + 697 897 65282 48 13 8 40 0 1 4 1 0 18 1 2 16 0 4 10 0 2 47 chain 200904 chr6_GL000256v2_alt 4929269 + 1774643 1780329 L1PB1 5432 + 2253 5422 9691 183 2 3 11 3 2 46 1 2 322 2432 249 208 305 0 332 0 2 107 3 0 6 9 14 623 24 23 100 0 1 16 0 1 50 2 4 68 3 0 55 0 1 32 1 0 88 5 4 189 32 32 71 19 17 19 1 0 10 1 0 13 6 2 9 2 0 52 2 1 16 6 5 37 2 1 16 2 0 10 5 1 5 5 0 14 26 21 23 1 0 22 1 0 12 1 0 11 1 0 7 chain 135404 chr6_GL000256v2_alt 4929269 + 1775267 1776773 SVA_D 2077 + 42 2072 13500 570 1 0 184 0 40 80 1 490 71 4 0 595 chain 13441 chr6_GL000256v2_alt 4929269 + 1815062 1815236 MER4A1 472 + 0 177 64400 99 1 3 29 0 1 45 chain 92037 chr6_GL000256v2_alt 4929269 + 1818554 1819959 LTR12D 1347 + 0 1347 19334 297 7 36 36 11 12 10 2 5 140 74 25 6 2 0 132 14 7 156 7 4 74 1 0 80 4 0 3 23 0 26 1 0 34 1 0 264 chain 2749 chr6_GL000256v2_alt 4929269 + 1819057 1819131 LTR12D 1347 + 567 678 80343 13 1 38 60 chain 499737 chr6_GL000256v2_alt 4929269 + 1821579 1827731 L1PA6 6164 + 13 6162 3133 369 38 32 4 0 1 30 19 0 7 0 4 107 8 7 213 0 17 378 0 3 668 0 1 177 6 0 153 7 9 141 2 1 16 32 22 469 1 3 512 0 1 231 76 76 49 0 1 229 1 0 48 0 2 514 0 2 384 1 2 335 0 1 83 1 0 367 0 5 313 0 8 8 2 1 6 7 0 135 1 0 4 chain 8341 chr6_GL000256v2_alt 4929269 + 1840012 1840123 L1MA7 2200 + 1520 1630 74050 33 1 0 77 chain 20517 chr6_GL000256v2_alt 4929269 + 1890138 1890374 AluY 311 + 62 299 55760 70 0 1 166 chain 10102 chr6_GL000256v2_alt 4929269 + 2317976 2318109 LTR12C 1709 + 773 946 52463 64 1 41 68 chain 23147 chr6_GL000256v2_alt 4929269 + 2318109 2318418 LTR12C 1709 + 668 1033 52148 169 1 0 72 3 18 4 0 1 39 0 41 21 chain 143510 chr6_GL000256v2_alt 4929269 + 2321247 2322956 LTR12C 1709 + 0 1709 12808 262 0 1 574 1 0 274 1 0 6 5 3 104 0 4 276 1 0 205 chain 22322 chr6_GL000256v2_alt 4929269 + 2356726 2357068 THE1A 353 + 0 353 53377 62 37 49 129 6 5 108 chain 5411 chr6_GL000256v2_alt 4929269 + 2386529 2386593 U6 107 + 37 101 83649 64 chain 17269 chr6_GL000256v2_alt 4929269 + 2401098 2401318 MER50 708 + 473 701 59496 11 1 0 62 0 9 146 chain 4824 chr6_GL000256v2_alt 4929269 + 2470560 2470647 MER50B 698 + 483 568 86578 36 0 1 5 11 10 7 2 0 26 chain 130503 chr6_GL000256v2_alt 4929269 + 2498704 2500248 LTR12C 1709 + 1 1709 13979 755 0 161 195 1 0 5 7 5 102 0 4 118 0 2 105 8 8 248 chain 47747 chr6_GL000256v2_alt 4929269 + 2514590 2515206 LTR43 600 + 0 600 30379 294 16 0 306 chain 5067 chr6_GL000256v2_alt 4929269 + 2516160 2516298 L1MA8 2339 + 1725 1858 85321 28 1 0 28 63 59 18 chain 6749 chr6_GL000256v2_alt 4929269 + 2517616 2517699 L1MC 810 + 638 721 78474 83 chain 44310 chr6_GL000256v2_alt 4929269 + 2518518 2519070 MER41A 554 + 0 554 31940 39 0 1 357 1 0 4 0 1 59 0 1 92 chain 26731 chr6_GL000256v2_alt 4929269 + 2519694 2520201 LTR10B1 532 + 0 526 46639 40 2 0 19 16 8 12 3 0 60 9 5 8 0 52 22 43 33 11 31 27 12 1 0 176 1 0 41 chain 24407 chr6_GL000256v2_alt 4929269 + 2526674 2527109 MLT2A2 560 + 0 560 50159 178 2 0 15 29 34 75 2 111 45 0 5 9 57 65 23 chain 55590 chr6_GL000256v2_alt 4929269 + 2577355 2582037 L1PA8A 6298 + 5455 6290 27691 34 7 8 78 3861 0 237 2 14 124 0 1 24 1 2 205 3 1 62 10 11 34 chain 2948 chr6_GL000256v2_alt 4929269 + 2584929 2584997 L1PREC2 3366 + 1229 1299 100379 18 1 2 18 15 16 16 chain 8802 chr6_GL000256v2_alt 4929269 + 2628522 2628648 L1PA13 3608 + 3328 3448 72986 7 1 0 56 1 0 5 2 0 45 2 0 7 chain 96635 chr6_GL000256v2_alt 4929269 + 2644625 2645753 L1PA5 6144 + 5011 6142 18697 355 0 1 586 0 2 187 chain 60475 chr6_GL000256v2_alt 4929269 + 2662695 2663506 L1PA8A 6298 + 5455 6289 26243 34 10 12 10 0 1 34 1 18 16 1 0 476 1 4 185 3 4 40 chain 25647 chr6_GL000256v2_alt 4929269 + 2729193 2729534 MLT2A1 477 + 0 342 48248 4 1 0 28 1 0 110 0 1 24 6 10 27 2 0 138 chain 451691 chr6_GL000256v2_alt 4929269 + 2732106 2737769 HERVL-int 5654 + 0 5654 4344 203 0 4 23 0 3 13 5 3 5 0 3 154 2 0 238 1 0 425 0 1 354 0 1 426 0 1 71 19 20 169 67 7 143 0 3 176 3 0 417 0 1 328 0 1 565 0 12 181 0 4 82 0 4 230 5 6 30 0 2 115 1 2 136 0 3 191 0 6 226 0 2 235 6 5 146 2 1 53 0 1 76 1 6 49 4 5 87 chain 32624 chr6_GL000256v2_alt 4929269 + 2737769 2738223 MLT2A1 477 + 0 477 39839 142 0 1 26 1 5 30 2 0 194 20 40 39 chain 18107 chr6_GL000256v2_alt 4929269 + 2766963 2767298 THE1B 368 + 9 368 58559 35 1 16 114 74 79 53 0 3 46 2 3 10 chain 25044 chr6_GL000256v2_alt 4929269 + 2809373 2809755 LTR3A 482 + 27 420 49197 125 14 19 108 7 8 20 5 6 67 5 7 16 0 2 15 chain 18408 chr6_GL000256v2_alt 4929269 + 2821411 2821770 L1MA8 2339 + 1847 2188 58225 85 5 1 25 4 5 46 1 0 36 1 6 18 70 50 38 2 3 28 chain 11268 chr6_GL000256v2_alt 4929269 + 3070628 3070771 LTR7B 505 + 0 164 68132 108 0 10 21 0 11 14 chain 5292 chr6_GL000256v2_alt 4929269 + 3215457 3215535 MLT2C2 476 + 182 263 84237 28 3 6 47 chain 5497 chr6_GL000256v2_alt 4929269 + 3523484 3523548 L1MA3 4352 + 2970 3034 83242 64 chain 46121 chr6_GL000256v2_alt 4929269 + 3581544 3582050 L1PA4 6152 + 4485 5010 31001 315 0 19 191 chain 279862 chr6_GL000256v2_alt 4929269 + 3587216 3591476 L1PB1 5432 + 1743 5427 7425 679 0 4 73 0 1 8 0 5 64 0 5 248 0 4 8 3 0 157 9 1 7 5 0 187 0 2 232 1 6 51 0 1 6 0 1 121 0 1 4 2 1 86 1 0 17 26 8 699 0 1 46 27 32 115 3 0 158 564 16 287 20 21 9 3 0 23 1 0 9 1 0 9 9 5 7 2 0 9 0 3 40 2 1 16 1 0 42 0 8 9 14 1 30 2 0 5 1 0 14 2 0 24 1 0 21 4 3 10 1 0 14 1 0 5 1 0 4 chain 23597 chr6_GL000256v2_alt 4929269 + 3593260 3593635 MSTA 426 + 0 426 51435 104 26 54 78 32 29 33 0 26 102 chain 4377 chr6_GL000256v2_alt 4929269 + 3593635 3593684 MSTA-int 1630 + 0 49 89019 49 chain 393075 chr6_GL000256v2_alt 4929269 + 3595815 3601078 L1PA8 5853 + 50 5853 5265 15 8 6 11 1 0 13 52 13 60 0 3 134 0 4 153 0 1 166 305 0 25 8 5 20 0 1 337 1 0 128 0 1 871 2 1 62 0 1 160 0 863 105 8 6 518 0 3 300 0 1 20 0 2 23 0 6 282 1 0 317 9 17 85 3 0 99 2 1 95 0 1 108 0 1 397 0 10 59 3 2 46 2 0 54 1 0 5 5 6 6 1 0 9 9 8 44 2 1 19 4 3 90 chain 45485 chr6_GL000256v2_alt 4929269 + 3621274 3621869 PABL_A 660 + 0 620 31315 94 0 15 15 0 2 14 0 1 78 1 0 63 3 0 11 2 13 314 chain 27222 chr6_GL000256v2_alt 4929269 + 3624619 3624905 AluYa5 310 + 16 302 45938 286 chain 33180 chr6_GL000256v2_alt 4929269 + 3647721 3648172 LTR46 455 + 0 455 39377 30 9 10 147 1 5 116 1 0 96 1 0 14 0 1 36 chain 5223 chr6_GL000256v2_alt 4929269 + 3668812 3668876 U6 107 + 11 75 84572 64 chain 11321 chr6_GL000256v2_alt 4929269 + 3678268 3678453 MSTC 436 + 248 423 68051 63 23 19 37 6 0 56 chain 74377 chr6_GL000256v2_alt 4929269 + 3690267 3691234 HUERS-P2-int 2744 + 1566 2512 22989 350 4 5 327 33 13 107 1 2 4 1 0 66 1 0 48 5 4 20 chain 27636 chr6_GL000256v2_alt 4929269 + 3749258 3749647 L1PA8 5853 + 5451 5853 45407 113 1 0 44 6 4 49 0 20 6 4 1 22 0 1 22 11 10 17 1 0 93 chain 45447 chr6_GL000256v2_alt 4929269 + 3767703 3768292 THE1B-int 1605 + 13 630 31339 255 0 2 160 1 26 104 5 6 64 chain 20310 chr6_GL000256v2_alt 4929269 + 3769565 3769883 THE1B 368 + 0 328 56001 107 2 3 59 2 1 22 41 51 85 chain 32469 chr6_GL000256v2_alt 4929269 + 3772811 3773407 L1PA15 4387 + 3749 4326 39969 64 52 42 36 3 1 40 1 0 101 0 1 66 6 11 14 6 5 55 1 0 21 4 0 9 1 0 41 34 31 27 3 1 11 chain 3707 chr6_GL000256v2_alt 4929269 + 3813213 3813256 LTR12D 1347 + 401 444 93563 43 chain 57326 chr6_GL000256v2_alt 4929269 + 3817043 3817720 LTR12 884 + 186 884 27149 170 0 22 382 3 2 122 chain 57059 chr6_GL000256v2_alt 4929269 + 3839190 3839904 LTR12 884 + 0 869 27248 59 0 41 22 1 26 114 0 91 25 3 1 490 chain 54364 chr6_GL000256v2_alt 4929269 + 3861488 3862111 L1PA5 6144 + 4301 4923 28097 6 1 0 557 1 0 6 0 1 52 chain 209707 chr6_GL000256v2_alt 4929269 + 3895126 3897452 L1PA3long 6157 + 3821 6147 9357 2326 chain 476610 chr6_GL000256v2_alt 4929269 + 3906940 3912208 L1PA3long 6157 + 0 5726 3706 3350 0 2 483 0 456 1435 chain 27345 chr6_GL000256v2_alt 4929269 + 3937747 3938073 LTR14A 344 + 5 344 45768 59 0 11 30 0 2 237 chain 5263 chr6_GL000256v2_alt 4929269 + 3940013 3940076 HERVK14-int 1672 + 1603 1665 84373 56 1 0 6 chain 28712 chr6_GL000256v2_alt 4929269 + 3942635 3942973 LTR14A 344 + 0 344 43774 10 0 1 21 1 0 73 0 2 56 0 4 177 chain 15902 chr6_GL000256v2_alt 4929269 + 3968206 3968471 MER51A 677 + 0 234 61153 42 4 2 14 4 1 117 17 0 24 13 3 21 0 1 9 chain 9454 chr6_GL000256v2_alt 4929269 + 3973485 3973684 HERV9-int 5642 + 5476 5642 71598 23 2 0 25 2 1 60 1 0 13 28 5 17 11 5 17 chain 104761 chr6_GL000256v2_alt 4929269 + 3983185 3984349 L1PA4 6152 + 4971 6136 17720 1031 0 1 133 chain 91839 chr6_GL000256v2_alt 4929269 + 3994757 3995829 MER11C 1089 + 0 1073 19365 178 0 2 387 2 1 23 0 1 5 0 1 80 1 0 59 0 1 140 2 0 195 chain 56933 chr6_GL000256v2_alt 4929269 + 4018501 4019216 LTR30 714 + 0 714 27290 12 0 1 201 0 1 28 1 2 9 1 0 94 1 0 183 16 15 145 1 0 23 chain 29408 chr6_GL000256v2_alt 4929269 + 4049109 4049428 L1PA4 6152 + 4267 4586 42721 319 chain 76907 chr6_GL000256v2_alt 4929269 + 4065142 4066142 LTR13 1007 + 0 1007 22344 68 6 0 201 0 2 110 18 19 230 1 0 50 0 12 120 5 6 157 2 0 32 chain 128769 chr6_GL000256v2_alt 4929269 + 4070368 4072251 THE1A-int 1579 + 31 1574 14184 34 1 2 435 0 1 73 0 1 691 343 0 306 chain 28333 chr6_GL000256v2_alt 4929269 + 4072256 4072610 THE1A 353 + 0 353 44366 110 1 0 243 chain 79915 chr6_GL000256v2_alt 4929269 + 4073940 4074902 LTR5_Hs 974 + 0 974 21639 288 0 6 173 0 1 351 8 15 37 2 0 103 chain 75881 chr6_GL000256v2_alt 4929269 + 4079244 4080212 LTR5_Hs 974 + 0 974 22619 289 0 1 180 0 1 185 1 0 163 8 15 19 20 18 103 chain 163147 chr6_GL000256v2_alt 4929269 + 4092314 4095639 L1MA1 4479 + 1697 4190 11538 174 0 2 59 1 0 10 27 29 22 0 1 17 3 2 65 0 6 77 4 0 119 1 2 142 9 10 103 28 1 67 6 5 48 11 10 79 8 12 12 3 1 14 0 1 17 1 0 16 1 0 138 1 0 27 2 0 9 0 1 165 2 0 39 0 14 38 1 0 12 5 0 28 0 1 24 5 0 25 0 1 4 9 28 6 0 7 6 7 0 106 16 14 32 0 2 59 0 1 107 1 0 25 2 0 16 810 0 74 1 0 17 2 0 13 1 0 88 9 5 89 0 1 36 1 0 29 2 0 44 1 0 11 23 15 13 chain 30250 chr6_GL000256v2_alt 4929269 + 4098919 4099391 MLT2A2 560 + 1 560 41806 5 1 0 118 1 0 45 12 11 12 50 129 81 0 11 92 0 4 8 4 0 43 chain 44099 chr6_GL000256v2_alt 4929269 + 4133969 4134501 L1PA7 6471 + 5759 6292 32083 83 5 6 444 chain 15150 chr6_GL000256v2_alt 4929269 + 4134503 4134706 L1M1 2793 + 1889 2099 62094 121 0 4 57 4 7 21 chain 40561 chr6_GL000256v2_alt 4929269 + 4175733 4176248 MER9a1 513 + 0 513 34255 46 25 0 198 1 23 30 0 1 215 chain 57478 chr6_GL000256v2_alt 4929269 + 4182527 4183366 L1PA13 3608 + 218 1029 27110 73 2 0 115 34 32 7 2 0 14 27 9 12 2 1 19 3 1 15 2 0 11 6 5 8 0 1 88 2 1 365 0 2 32 chain 85984 chr6_GL000256v2_alt 4929269 + 4187683 4188850 L1PA11 4918 + 3401 4578 20441 257 3 2 36 1 0 563 0 1 50 0 4 18 0 4 59 6 5 7 2 0 68 2 0 12 5 4 17 4 0 11 6 22 13 1 0 13 2 0 11 chain 5358 chr6_GL000256v2_alt 4929269 + 4363636 4363764 MSTD 398 + 0 132 83916 15 53 57 60 chain 43401 chr6_GL000256v2_alt 4929269 + 4495758 4496297 THE1B-int 1605 + 0 587 32503 162 0 21 249 0 25 8 0 2 120 chain 258814 chr6_GL000256v2_alt 4929269 + 4501046 4505536 HERVK22-int 3844 + 15 3815 8001 23 3 0 194 0 1 289 0 1 45 1 4 107 4 5 16 2 0 372 4 1 113 9 1 341 0 1 426 8 12 82 1 0 330 9 7 275 0 1 335 2 3 48 1 0 66 5 4 6 1 0 16 6 5 33 1 0 20 2 0 39 15 10 45 159 119 19 10 7 28 826 198 86 18 17 49 chain 5586 chr6_GL000256v2_alt 4929269 + 4663427 4663488 MER5A 189 + 30 91 82863 61 chain 3763 chr6_GL000256v2_alt 4929269 + 4842772 4842818 MER20 218 + 87 132 93117 4 1 0 41 chain 5252 chr6_GL000256v2_alt 4929269 + 4851071 4851134 MER2 342 + 152 215 84431 63 chain 77094 chr6_GL000256v2_alt 4929269 + 4908978 4909822 L1PA3long 6157 + 5314 6157 22293 355 1 0 488 chain 4120 chr6_GL000256v2_alt 4929269 + 4911440 4911483 MER66D 528 + 360 403 90651 43 chain 28370 chr6_GL000256v2_alt 4929269 + 4913981 4914333 THE1A 353 + 2 353 44313 108 1 0 243 chain 127310 chr6_GL000256v2_alt 4929269 + 4914333 4915893 THE1A-int 1579 + 0 1566 14386 567 0 1 94 2 3 380 4 5 92 0 1 362 0 2 59 chain 3787 chr6_GL000256v2_alt 4929269 + 4920152 4920208 L1PB1 5432 + 5375 5427 92941 16 1 0 13 1 0 18 2 0 5 chain 9477 chr19_GL949752v1_alt 987100 + 1213 1389 MER5A 189 + 11 168 71528 89 4 0 12 43 28 28 chain 82486 chr19_GL949752v1_alt 987100 + 11133 12088 LTR13A 966 + 0 953 21129 76 0 4 582 6 0 291 chain 8842 chr19_GL949752v1_alt 987100 + 126281 126379 BC200 147 + 5 103 72880 98 chain 24283 chr19_GL949752v1_alt 987100 + 309685 309983 AluSp 311 + 0 296 50358 36 1 0 89 1 0 171 chain 26203 chr19_GL949752v1_alt 987100 + 449705 450779 LTR7B 505 + 0 497 47411 105 0 10 46 0 2 8 22 37 22 3 0 7 662 21 53 9 50 80 14 13 43 chain 2929 chr19_GL949752v1_alt 987100 + 449948 449979 LTR7B 505 + 258 289 100588 31 chain 4321 chr19_GL949752v1_alt 987100 + 450055 450115 LTR7B 505 + 208 289 89347 26 2 23 32 chain 2040 chr19_GL949752v1_alt 987100 + 450532 450560 LTR7B 505 + 208 234 106106 19 2 0 7 chain 20472 chr19_GL949752v1_alt 987100 + 486519 486737 L1HS 6032 + 4337 4555 55809 218 chain 33568 chr19_GL949752v1_alt 987100 + 518069 518433 L1PA2 6032 + 5658 6022 39031 364 chain 6385 chr19_GL949752v1_alt 987100 + 521192 521283 MER4E 760 + 646 752 79725 32 1 15 21 0 1 37 chain 37378 chr19_GL949752v1_alt 987100 + 584822 585917 PRIMA4_LTR 623 + 0 605 36498 38 12 12 125 0 23 48 475 12 59 1 0 31 1 0 20 16 18 41 51 0 119 5 7 37 2 1 14 chain 15363 chr19_GL949752v1_alt 987100 + 595465 595666 L1PA7 6471 + 6267 6464 61835 17 0 1 30 6 1 148 chain 67417 chr19_GL949752v1_alt 987100 + 848092 849021 LTR5_Hs 974 + 0 974 24593 168 11 20 271 0 4 12 0 5 146 10 9 23 1 2 9 8 10 13 0 2 82 7 7 34 5 6 7 0 22 122 chain 11899 chr19_GL949752v1_alt 987100 + 857110 857525 MER41A 554 + 0 170 67010 14 0 1 80 249 0 25 1 4 46 chain 19363 chr19_GL949752v1_alt 987100 + 879945 880184 AluSp 311 + 58 297 57167 239 chain 20885 chr19_GL949752v1_alt 987100 + 881355 881614 AluSc 308 + 28 296 55271 32 0 8 40 2 3 185 chain 16137 chr19_GL949752v1_alt 987100 + 919575 919840 AluSc 308 + 20 298 60835 44 2 0 114 1 33 26 33 23 24 7 0 14 chain 55656 chr19_GL949752v1_alt 987100 + 925207 925855 L1PA10 4194 + 3502 4150 27678 584 0 3 27 3 0 34 chain 3384 chr19_GL949752v1_alt 987100 + 938872 938925 L1PB3 3668 + 3511 3562 96240 17 3 1 33 chain 83380 chr19_GL949752v1_alt 987100 + 962471 963471 LTR5A 1029 + 0 1029 20941 13 0 4 116 1 14 621 15 21 156 0 6 78 chain 7669 chr6_KI270758v1_alt 76752 + 25727 25819 MER6A 605 + 509 601 75708 92 chain 33437 chr6_KI270758v1_alt 76752 + 31835 32258 L1P1 4361 + 2933 3354 38951 147 1 5 112 8 0 7 4 0 12 0 5 59 0 1 73 chain 48162 chr6_KI270758v1_alt 76752 + 32258 32812 L1P3 4156 + 2659 3217 30231 438 0 4 116 chain 31814 chr6_KI270758v1_alt 76752 + 38068 38514 MER41B 635 + 0 448 40481 93 1 0 35 0 1 201 5 6 23 18 19 70 chain 18446 chr6_KI270758v1_alt 76752 + 65014 65235 L1PA6 6164 + 5939 6162 58173 212 0 2 9 chain 138190 chr6_KI270758v1_alt 76752 + 67854 69424 SVA_D 2077 + 57 2077 13252 20 0 17 448 0 40 105 0 40 73 0 40 38 0 310 41 1 2 157 0 1 4 7 8 676 chain 9477 chr19_GL949753v2_alt 796479 + 1213 1389 MER5A 189 + 11 168 71527 89 4 0 12 43 28 28 chain 82486 chr19_GL949753v2_alt 796479 + 11133 12088 LTR13A 966 + 0 953 21128 76 0 4 582 6 0 291 chain 8842 chr19_GL949753v2_alt 796479 + 126281 126379 BC200 147 + 5 103 72879 98 chain 15875 chr19_GL949753v2_alt 796479 + 282487 282842 L1PB1 5432 + 5107 5427 61187 8 5 0 21 10 8 14 4 0 10 2 0 51 1 0 12 6 5 44 1 0 16 1 0 4 2 0 11 8 0 13 27 22 24 1 0 20 6 5 9 1 0 5 0 2 11 2 0 5 chain 4312 chr19_GL949753v2_alt 796479 + 296632 296678 L1PREC2 3366 + 1122 1168 89431 46 chain 16761 chr19_GL949753v2_alt 796479 + 310226 310585 THE1B 368 + 0 368 60079 101 22 16 14 7 11 35 70 82 47 14 13 49 chain 5739 chr19_GL949753v2_alt 796479 + 331105 331175 L1P4e 1373 + 24 94 82183 70 chain 37378 chr19_GL949753v2_alt 796479 + 406492 407587 PRIMA4_LTR 623 + 0 605 36497 38 12 12 125 0 23 48 475 12 59 1 0 31 1 0 20 16 18 41 51 0 119 5 7 37 2 1 14 chain 15232 chr19_GL949753v2_alt 796479 + 417178 417379 L1PA7 6471 + 6267 6464 61997 17 0 1 30 6 1 148 chain 67500 chr19_GL949753v2_alt 796479 + 655896 656825 LTR5_Hs 974 + 0 974 24571 168 11 20 271 0 4 12 0 5 146 10 9 23 1 2 9 8 10 13 0 2 82 7 7 34 5 6 9 0 22 120 chain 24493 chr19_GL949753v2_alt 796479 + 664913 666406 MER41A 554 + 0 387 50034 14 0 1 80 249 0 25 1 4 46 891 29 158 3 4 26 chain 19494 chr19_GL949753v2_alt 796479 + 689358 689597 AluSp 311 + 58 297 57031 239 chain 20976 chr19_GL949753v2_alt 796479 + 690764 691024 AluSc 308 + 28 297 55157 32 0 8 40 2 3 186 chain 16137 chr19_GL949753v2_alt 796479 + 728954 729219 AluSc 308 + 20 298 60834 44 2 0 114 1 33 26 33 23 24 7 0 14 chain 55656 chr19_GL949753v2_alt 796479 + 734586 735234 L1PA10 4194 + 3502 4150 27677 584 0 3 27 3 0 34 chain 3384 chr19_GL949753v2_alt 796479 + 748251 748304 L1PB3 3668 + 3511 3562 96239 17 3 1 33 chain 83380 chr19_GL949753v2_alt 796479 + 771850 772850 LTR5A 1029 + 0 1029 20940 13 0 4 116 1 14 621 15 21 156 0 6 78 chain 9477 chr19_KI270938v1_alt 1066800 + 1213 1389 MER5A 189 + 11 168 71526 89 4 0 12 43 28 28 chain 82486 chr19_KI270938v1_alt 1066800 + 11133 12088 LTR13A 966 + 0 953 21127 76 0 4 582 6 0 291 chain 8842 chr19_KI270938v1_alt 1066800 + 126281 126379 BC200 147 + 5 103 72878 98 chain 15875 chr19_KI270938v1_alt 1066800 + 283204 283559 L1PB1 5432 + 5107 5427 61186 8 5 0 21 10 8 14 4 0 10 2 0 51 1 0 12 6 5 44 1 0 16 1 0 4 2 0 11 8 0 13 27 22 24 1 0 20 6 5 9 1 0 5 0 2 11 2 0 5 chain 4312 chr19_KI270938v1_alt 1066800 + 297517 297563 L1PREC2 3366 + 1122 1168 89430 46 chain 16761 chr19_KI270938v1_alt 1066800 + 311112 311471 THE1B 368 + 0 368 60078 101 22 16 14 7 11 35 70 82 47 14 13 49 chain 5739 chr19_KI270938v1_alt 1066800 + 331926 331996 L1P4e 1373 + 24 94 82182 70 chain 24314 chr19_KI270938v1_alt 1066800 + 387412 387709 AluSp 311 + 0 295 50313 36 1 0 89 1 0 170 chain 25921 chr19_KI270938v1_alt 1066800 + 527311 528452 LTR7B 505 + 0 491 47831 108 0 10 43 0 2 8 159 37 27 603 23 53 9 50 80 14 13 37 chain 2583 chr19_KI270938v1_alt 1066800 + 527491 527575 LTR7B 505 + 262 312 103082 22 41 7 21 chain 2456 chr19_KI270938v1_alt 1066800 + 527664 527690 LTR7B 505 + 263 289 103867 26 chain 2143 chr19_KI270938v1_alt 1066800 + 527806 527830 LTR7B 505 + 210 234 105577 24 chain 2040 chr19_KI270938v1_alt 1066800 + 528211 528239 LTR7B 505 + 208 234 106105 19 2 0 7 chain 20472 chr19_KI270938v1_alt 1066800 + 564216 564434 L1HS 6032 + 4337 4555 55808 218 chain 33568 chr19_KI270938v1_alt 1066800 + 595764 596128 L1PA2 6032 + 5658 6022 39030 364 chain 6385 chr19_KI270938v1_alt 1066800 + 598887 598978 MER4E 760 + 646 752 79724 32 1 15 21 0 1 37 chain 37378 chr19_KI270938v1_alt 1066800 + 662546 663641 PRIMA4_LTR 623 + 0 605 36496 38 12 12 125 0 23 48 475 12 59 1 0 31 1 0 20 16 18 41 51 0 119 5 7 37 2 1 14 chain 15363 chr19_KI270938v1_alt 1066800 + 673260 673461 L1PA7 6471 + 6267 6464 61834 17 0 1 30 6 1 148 chain 67500 chr19_KI270938v1_alt 1066800 + 926217 927146 LTR5_Hs 974 + 0 974 24570 168 11 20 271 0 4 12 0 5 146 10 9 23 1 2 9 8 10 13 0 2 82 7 7 34 5 6 9 0 22 120 chain 24493 chr19_KI270938v1_alt 1066800 + 935234 936727 MER41A 554 + 0 387 50033 14 0 1 80 249 0 25 1 4 46 891 29 158 3 4 26 chain 19494 chr19_KI270938v1_alt 1066800 + 959679 959918 AluSp 311 + 58 297 57030 239 chain 20976 chr19_KI270938v1_alt 1066800 + 961085 961345 AluSc 308 + 28 297 55156 32 0 8 40 2 3 186 chain 16137 chr19_KI270938v1_alt 1066800 + 999275 999540 AluSc 308 + 20 298 60833 44 2 0 114 1 33 26 33 23 24 7 0 14 chain 57361 chr19_KI270938v1_alt 1066800 + 1004879 1005555 L1PA10 4194 + 3461 4150 27140 31 0 13 580 0 3 28 3 0 34 chain 3384 chr19_KI270938v1_alt 1066800 + 1018572 1018625 L1PB3 3668 + 3511 3562 96238 17 3 1 33 chain 83380 chr19_KI270938v1_alt 1066800 + 1042171 1043171 LTR5A 1029 + 0 1029 20939 13 0 4 116 1 14 621 15 21 156 0 6 78 chain 529557 chrUn_KI270442v1 392061 + 113598 119619 L1PA3long 6157 + 5 6152 1850 148 11 12 611 0 128 542 1 0 871 0 2 261 0 3 140 0 1 464 0 1 1196 9 0 1767 chain 27454 chrUn_KI270442v1 392061 + 122186 122486 AluYb8 318 + 21 318 45632 111 3 0 186 chain 108883 chrUn_KI270442v1 392061 + 129596 130864 L1PA3long 6157 + 1908 3179 17199 441 0 2 340 8 9 479 chain 53983 chrUn_KI270442v1 392061 + 130864 131519 L1PA3long 6157 + 3180 3834 28235 35 6 5 614 chain 190869 chrUn_KI270442v1 392061 + 131519 133677 L1PA3long 6157 + 3835 5995 10074 916 0 1 430 0 1 812 chain 13444 chrUn_KI270442v1 392061 + 133677 133837 L1PA3long 6157 + 5996 6156 64395 160 chain 215148 chrUn_KI270442v1 392061 + 152210 154668 L1PA3long 6157 + 3684 6147 9169 820 0 1 1226 0 1 140 0 3 122 5 0 6 0 5 139 chain 76631 chrUn_KI270442v1 392061 + 175762 176635 L1PA3long 6157 + 5282 6155 22409 873 chain 185791 chrUn_KI270442v1 392061 + 179510 181668 L1PA3long 6157 + 3989 6152 10306 652 18 17 836 0 1 514 3 8 135 chain 6703 chrUn_KI270442v1 392061 + 190910 190988 L1PA3long 6157 + 5669 5747 78634 78 chain 33842 chrUn_KI270442v1 392061 + 190988 191384 L1PA3long 6157 + 5748 6144 38817 396 chain 398244 chrUn_KI270442v1 392061 + 193873 198436 L1PA3long 6157 + 1562 6130 5180 1626 0 1 1134 1 2 1074 0 1 589 8 9 11 1 2 119 chain 2262 chrUn_KI270442v1 392061 + 198436 198462 L1PA3long 6157 + 6131 6157 104966 26 chain 503706 chrUn_KI270442v1 392061 + 254024 267279 L1PA4 6152 + 6 6149 3005 501 0 1 525 2 1 209 0 1 1519 9 4 16 0 2 722 7 2 289 7 8 6 1 0 258 1 0 565 2 0 537 0 3 220 7105 0 754 chain 38647 chrUn_KI270442v1 392061 + 259562 259999 L1PA4 6152 + 5540 5977 35608 437 chain 4127 chrUn_KI270442v1 392061 + 266434 266483 L1PA4 6152 + 5346 5395 90605 49 chain 87856 chrUn_KI270442v1 392061 + 279551 281003 L1PA7 6471 + 5308 6455 20075 165 0 5 143 0 3 381 4 5 19 20 1 96 0 18 74 314 0 136 0 1 100 chain 77278 chrUn_KI270442v1 392061 + 289683 290647 LTR5_Hs 974 + 0 974 22252 458 0 4 410 0 3 30 3 6 63 chain 362866 chrUn_KI270442v1 392061 + 302003 306336 L1P1 4361 + 1 4341 5772 124 14 0 11 1 15 274 2 1 5 0 1 37 0 4 254 1 2 972 0 1 323 0 2 1482 4 5 419 1 2 213 3 2 155 1 0 23 2 1 12 chain 17383 chrUn_KI270442v1 392061 + 316522 316721 L1PA2 6032 + 5830 6028 59378 182 1 0 16 chain 108194 chrUn_KI270435v1 92983 + 15617 16853 L1PA3long 6157 + 4916 6152 17291 1078 0 5 7 3 0 4 2 0 142 chain 17416 chrUn_KI270435v1 92983 + 20717 20935 L1PA2 6032 + 5803 6021 59332 73 6 0 10 0 6 129 chain 516233 chrUn_KI270435v1 92983 + 28241 34368 L1PA3long 6157 + 9 6157 2460 437 0 1 794 2 3 202 0 3 731 0 1 916 0 1 85 0 1 1127 0 1 52 0 2 304 0 1 635 0 1 49 0 1 21 0 1 23 6 5 251 0 1 165 2 1 161 1 8 163 chain 73347 chrUn_KI270435v1 92983 + 52439 53289 L1PA3long 6157 + 5304 6154 23249 850 chain 12957 chrUn_KI270435v1 92983 + 75836 75985 L1PA3long 6157 + 5669 5818 65171 149 chain 29307 chrUn_KI270435v1 92983 + 75985 76323 L1PA3long 6157 + 5819 6157 42881 338 chain 78825 chrUn_KI270435v1 92983 + 89958 90906 L1PA4 6152 + 5026 5977 21912 485 0 1 428 0 2 35 chain 236154 chrUn_KI270438v1 112505 + 11736 14754 L1P1 4361 + 58 3081 8566 516 1 0 8 1 0 4 0 1 115 12 5 212 0 1 304 27 27 244 1 5 271 0 1 335 0 1 63 0 1 407 0 4 40 6 7 451 chain 77435 chrUn_KI270438v1 112505 + 44262 45212 L1PA4 6152 + 5026 5977 22211 275 1 0 79 0 1 130 0 1 465 chain 394079 chrUn_KI270519v1 138126 + 43877 48533 L1PA3long 6157 + 9 6147 5247 142 13 14 99 0 1 474 1 0 42 0 128 497 9 0 5 0 9 1174 10 1359 157 0 2 371 0 1 4 1 0 398 0 1 687 0 1 572 chain 524890 chrUn_KI270519v1 138126 + 72743 78888 L1PA3long 6157 + 9 6157 2054 2112 1 2 117 0 1 46 0 1 888 0 1 2308 2 1 509 0 5 6 10 5 146 chain 66715 chrUn_KI270519v1 138126 + 96633 98327 L1PA3long 6157 + 5352 6157 24770 452 0 2 202 1 0 62 890 0 87 chain 29573 chrUn_KI270519v1 138126 + 97840 98179 L1PA3long 6157 + 5669 6008 42515 339 chain 26945 chrUn_KI270519v1 138126 + 123397 123709 L1PA3long 6157 + 5669 5981 46347 312 chain 67525 chrUn_KI270519v1 138126 + 134419 135213 L1PA4 6152 + 5040 5834 24558 471 0 1 300 1 0 22 chain 8146 chrUn_KI270539v1 993 + 15 113 SVA_F 1814 + 923 1039 43090 24 4 19 32 0 3 38 chain 7037 chrUn_KI270539v1 993 + 113 256 SVA_F 1814 + 679 1006 39650 16 0 120 28 10 59 45 0 15 44 chain 2244 chrUn_KI270539v1 993 + 256 283 SVA_F 1814 + 1182 1209 43090 27 chain 36313 chrUn_KI270539v1 993 + 283 974 SVA_F 1814 + 632 1291 37206 4 0 1 24 220 3 31 0 80 29 9 98 45 0 15 38 0 1 273 1 0 17 chain 4572 chrUn_KI270539v1 993 + 311 366 SVA_F 1814 + 1237 1291 43090 37 1 0 17 chain 4460 chrUn_KI270539v1 993 + 366 420 SVA_F 1814 + 989 1043 79253 16 1 0 33 0 1 4 chain 75655 chrUn_KI270538v1 91309 + 15026 15929 L1PA2 6032 + 5132 6029 22674 211 6 0 523 1 6 8 2 0 141 3 0 8 chain 516161 chrUn_KI270538v1 91309 + 65911 71924 L1PA2 6032 + 12 6031 2463 59 1 2 178 6 5 485 0 1 801 5 6 647 1 2 364 1 0 170 0 2 315 0 2 765 0 1 108 1 2 270 1 0 316 2 1 1365 3 2 134 2 3 13 chain 58475 chrUn_KI270583v1 1400 + 695 1400 L1P2 5180 + 1974 2680 26820 444 0 1 261 chain 12181 chrUn_KI270581v1 7046 + 176 512 L1PREC2 3366 + 1433 1764 66508 32 165 160 139 chain 239972 chrUn_KI270581v1 7046 + 3073 6121 L1P1 4361 + 1 4328 8475 135 11 25 413 1 0 428 0 1 387 0 1 4 2 1 30 1 2 346 0 37 161 2 1219 28 0 2 38 0 2 753 1 9 128 1 0 151 4 3 23 chain 31774 chrUn_KI270579v1 31033 + 7482 7849 L1PA3long 6157 + 5789 6157 40515 356 0 1 11 chain 75560 chrUn_KI270589v1 44474 + 12166 13105 L1PA3long 6157 + 5206 6152 22703 82 0 4 8 1 3 551 0 1 147 1 8 9 7 0 133 chain 75303 chrUn_KI270589v1 44474 + 13449 14259 L1HS 6032 + 5215 6029 22768 759 0 4 51 chain 10011 chrUn_KI270364v1 2855 + 2735 2855 L1HS 6032 + 953 1073 70400 120 chain 33516 chrUn_GL000195v1 182896 + 10491 11333 HERVL66-int 1251 + 162 878 39074 16 19 13 64 26 0 35 0 1 8 20 1 17 91 57 80 1 2 40 1 0 60 22 11 22 10 7 45 1 0 37 1 0 45 34 32 21 77 53 49 chain 40416 chrUn_GL000195v1 182896 + 34393 34844 LTR7 482 + 0 482 34371 242 0 31 209 chain 224478 chrUn_GL000195v1 182896 + 60042 62997 L1PA7 6471 + 3315 6291 8909 40 7 6 83 2 6 34 13 12 82 0 4 873 0 6 6 8 5 185 1 2 165 0 2 129 2 0 284 0 1 265 0 1 115 1 0 18 0 1 158 2 1 13 1 10 309 0 1 159 chain 100752 chrUn_GL000195v1 182896 + 80199 81518 LTR12C 1709 + 0 1709 18211 208 32 49 81 0 43 83 0 1 21 1 2 162 0 278 143 0 47 106 0 4 399 1 0 82 chain 93765 chrUn_GL000195v1 182896 + 135897 137792 L1PA8 5853 + 4382 5853 19071 215 14 15 381 9 1 12 0 7 54 576 158 290 0 1 48 1 0 49 2 0 65 24 22 40 2 1 18 3 2 92 chain 543143 chrUn_GL000219v1 179198 + 34100 40135 L1PA2 6032 + 1 6032 1128 256 1 0 591 0 1 1726 5 0 1807 0 1 1649 chain 13296 chrUn_GL000219v1 179198 + 103519 103774 L1PA16 3655 + 3385 3619 64628 30 10 11 137 16 14 14 32 12 16 chain 185058 chrUn_GL000219v1 179198 + 112280 114251 L1HS 6032 + 2967 4938 10334 1971 chain 7271 chrUn_GL000219v1 179198 + 140486 140597 MER30 238 + 129 238 76761 70 12 10 29 chain 79434 chrUn_GL000219v1 179198 + 161801 162706 L1P1 4361 + 2257 3162 21757 905 chain 75472 chrUn_GL000219v1 179198 + 175209 176178 LTR5_Hs 974 + 0 974 22727 167 1 0 122 0 1 177 0 1 188 1 0 163 8 15 31 8 6 103 chain 75475 chrUn_GL000220v1 161802 + 75185 76035 L1PA3long 6157 + 5308 6157 22722 590 1 0 259 chain 273816 chrUn_GL000220v1 161802 + 82716 85998 L1P1 4361 + 1 3290 7613 626 0 2 91 5 6 279 0 1 42 0 1 5 2 1 174 1 2 578 0 2 940 1 0 21 0 1 4 1 0 425 0 1 87 chain 35514 chrUn_GL000220v1 161802 + 86722 87197 L1PA5 6144 + 5659 6135 37715 53 0 1 178 4 2 71 23 25 146 chain 16259 chrUn_GL000220v1 161802 + 117961 118401 LSU-rRNA_Hsa 377 + 19 366 60666 21 9 8 60 1 0 16 1 0 14 4 0 27 177 93 42 3 1 65 chain 148314 chrUn_GL000224v1 179693 + 44038 45903 L1PA5 6144 + 4250 6139 12465 381 0 5 232 0 4 211 29 29 60 6 12 40 1 6 61 0 8 83 0 1 349 8 0 153 1 0 118 0 4 132 chain 36900 chrUn_GL000224v1 179693 + 101304 101851 LTR61 567 + 0 545 36816 22 4 5 28 0 11 73 8 13 68 6 0 146 12 0 124 15 14 41 chain 21810 chrUn_GL000224v1 179693 + 117427 117843 LTR66 600 + 4 528 54090 12 3 0 5 0 3 28 0 4 153 14 123 31 68 51 15 1 0 19 4 21 4 1 0 13 3 0 42 chain 36900 chrUn_KI270741v1 157432 + 43183 43730 LTR61 567 + 0 545 36815 22 4 5 28 0 11 73 8 13 68 6 0 146 12 0 124 15 14 41 chain 23539 chrUn_KI270741v1 157432 + 59299 59715 LTR66 600 + 4 528 51521 12 3 0 5 0 3 28 0 4 153 14 123 31 68 51 15 1 0 44 0 13 42 chain 389985 chrUn_KI270741v1 157432 + 153009 157432 L1HS 6032 + 1 4420 5323 256 1 0 591 0 2 4 1 0 1721 5 0 1807 0 1 37 chain 52092 chrUn_GL000213v1 164239 + 13215 13785 L1HS 6032 + 5465 6031 28848 237 3 0 307 1 0 22 chain 27450 chrUn_GL000213v1 164239 + 57531 58096 LTR4 552 + 34 550 45639 30 43 52 65 1 0 11 12 11 115 78 7 61 39 55 23 1 0 86 chain 27328 chrUn_GL000213v1 164239 + 79443 80000 L1MA1 4479 + 3565 4139 45790 16 13 4 130 5 4 20 2 0 16 1 0 9 4 21 41 84 103 18 1 0 5 3 0 59 0 1 62 5 4 28 7 5 28 chain 95268 chrUn_GL000213v1 164239 + 96420 102203 L1PA7 6471 + 2281 6342 18873 350 8 1 51 4 5 32 4376 2649 220 4 5 27 1 0 53 0 1 30 6 14 589 1 3 31 chain 3631 chrUn_KI270743v1 210658 + 1487 1575 MER21C 908 + 662 751 94179 27 33 34 28 chain 455547 chrUn_KI270743v1 210658 + 9074 14388 L1PA4 6152 + 15 5350 4245 111 3 17 896 0 1 405 1 2 284 0 1 697 0 3 769 0 1 480 1 0 959 0 1 708 chain 22437 chrUn_KI270743v1 210658 + 41604 41884 LTR14A 344 + 0 344 53224 42 0 60 64 0 4 174 chain 129223 chrUn_KI270743v1 210658 + 41979 43641 HERVK14-int 1672 + 1 1647 14117 28 1 0 12 1 0 47 1 0 44 2 1 172 1 0 29 3 1 233 1 0 250 2 1 163 1 0 79 3 1 9 3 0 35 1 0 46 12 16 82 1 0 58 0 1 18 0 1 88 1 0 55 0 1 7 2 0 31 2 0 9 1 0 128 chain 34777 chrUn_KI270743v1 210658 + 43660 44111 MER9a2 513 + 0 513 38175 11 5 4 4 0 1 207 2 68 97 0 2 22 7 1 96 chain 150159 chrUn_KI270743v1 210658 + 45451 47466 HERVK9-int 4720 + 54 3614 12337 4 1 0 27 2 3 36 3 2 6 1 0 26 6 5 227 9 11 5 2 0 266 14 0 824 0 924 230 52 690 274 chain 415312 chrUn_KI270743v1 210658 + 54656 59852 L1PA7 6471 + 1129 6464 4952 53 5 6 70 0 40 251 8 6 212 5 6 465 0 4 243 1 0 81 1 11 62 1 2 71 0 1 173 0 4 429 1 0 226 1 5 122 7 0 6 0 77 59 0 1 472 0 1 463 0 1 185 19 19 112 0 1 438 9 12 96 1 5 83 2 0 617 3 4 135 3 0 5 chain 464012 chrUn_KI270743v1 210658 + 194328 199664 L1PA3long 6157 + 786 6142 4020 1995 0 5 242 0 1 136 5 6 126 0 1 1588 4 11 152 1 0 4 0 1 250 5 6 56 0 1 641 0 3 131 chain 23547 chrUn_KI270743v1 210658 + 200443 202314 MER57-int 2662 + 168 2184 51511 12 0 5 48 0 2 78 2 0 94 1316 1449 19 104 105 63 35 41 20 21 21 59 chain 67038 chrUn_KI270744v1 168472 + 37661 38428 L1PA5 6144 + 5367 6135 24696 435 0 1 332 chain 140258 chrUn_KI270744v1 168472 + 70748 72409 SVA_D 2077 + 6 2077 13082 177 0 2 580 80 0 147 2 0 4 0 265 38 0 1 4 1 2 98 1 225 521 1 0 7 chain 25570 chrUn_KI270744v1 168472 + 86630 86924 L1PA5 6144 + 5850 6144 48366 294 chain 265646 chrUn_KI270744v1 168472 + 153631 156768 L1P2 5180 + 958 4097 7808 55 1 0 744 0 1 205 5 0 363 0 1 729 0 1 46 0 2 30 0 4 549 2 0 258 0 1 150 chain 19522 chrUn_KI270744v1 168472 + 158342 158663 L1PA14 3548 + 3143 3456 56993 25 1 3 161 1 0 10 5 1 23 0 13 10 36 19 7 1 0 41 chain 25169 chrUn_KI270745v1 41891 + 8375 8776 MER1A 529 + 90 490 49006 10 5 0 14 9 10 170 10 12 137 27 28 19 chain 135217 chrUn_KI270746v1 66486 + 26558 28061 L1PA2 6032 + 4516 6026 13520 603 0 1 889 0 6 11 chain 20284 chrUn_KI270747v1 198735 + 24606 24917 THE1B 368 + 6 341 56034 38 0 15 110 1 0 29 41 51 92 chain 22970 chrUn_KI270748v1 93321 + 19900 20166 L1PA5 6144 + 5872 6142 52402 216 0 4 50 chain 35124 chrUn_KI270749v1 158759 + 85198 85571 L1HS 6032 + 5659 6032 37942 373 chain 307836 chrUn_KI270749v1 158759 + 86311 89806 L1PA5 6144 + 2571 6086 6667 87 0 1 474 0 5 26 1 0 560 0 1 615 7 11 238 1 0 1102 0 11 384 chain 3246 chrUn_KI270749v1 158759 + 93949 94015 L1MCa 1829 + 1589 1654 97508 23 18 17 25 chain 191081 chrUn_KI270749v1 158759 + 118239 120474 L1P1 4361 + 522 2753 10065 52 1 0 118 7 0 66 0 1 521 1 0 246 0 1 668 0 2 483 0 1 72 chain 66886 chrUn_KI270749v1 158759 + 146243 146966 L1HS 6032 + 5302 6032 24724 571 0 7 152 chain 533946 chrUn_KI270751v1 150742 + 58563 64694 L1PA3long 6157 + 4 6142 1661 217 4 0 373 0 1 652 1 2 1916 5 6 516 0 1 1198 6 13 150 1 0 4 0 1 1088 chain 17848 chrUn_KI270751v1 150742 + 65477 65776 MER57-int 2662 + 168 438 58831 12 0 5 48 0 2 78 10 8 86 0 5 7 39 0 19 chain 36985 chrUn_KI270751v1 150742 + 134141 134596 L1PA5 6144 + 5688 6144 36743 122 1 2 332 chain 124581 chrUn_KI270751v1 150742 + 142999 144478 L1PA4 6152 + 4383 5881 14766 102 0 5 445 6 22 7 7 0 83 0 1 252 1 5 576 chain 8761 chrUn_KI270753v1 62944 + 13807 14017 Tigger3a 397 + 139 365 73080 9 0 10 62 85 91 54 chain 49718 chrUn_KI270753v1 62944 + 19609 20277 PABL_B 668 + 0 668 29679 73 15 16 146 1 0 115 4 3 159 1 2 154 chain 11924 chrUn_KI270753v1 62944 + 42905 43417 LTR12D 1347 + 459 1049 66960 50 35 202 65 230 175 49 61 27 22 chain 6185 chrUn_KI270755v1 36723 + 7491 7566 LTR12C 1709 + 1020 1095 80407 75 chain 2977 chrUn_KI270755v1 36723 + 7576 7752 LTR12C 1709 + 667 728 100081 16 80 0 25 42 7 13 chain 11170 chrUn_KI270755v1 36723 + 26106 26645 LTR12D 1347 + 437 1153 68306 99 305 415 49 70 137 16 chain 114403 chrUn_KI270757v1 71251 + 47724 49074 L1PA3long 6157 + 3843 5194 16489 638 0 1 153 1 0 47 5 6 506 chain 62313 chrUn_KI270757v1 71251 + 67428 68121 L1PA2 6032 + 5337 6030 25794 693 chain 23885 chrUn_GL000214v1 137718 + 3746 4030 LTR14A 344 + 0 344 50969 42 0 60 242 chain 132497 chrUn_GL000214v1 137718 + 4126 5805 HERVK14-int 1672 + 1 1665 13782 28 1 0 12 1 0 47 1 0 217 1 0 22 4 6 235 1 0 246 6 5 163 1 0 79 3 1 9 3 0 35 1 0 202 0 1 18 0 1 88 1 0 59 10 9 26 2 0 9 1 0 140 1 0 6 chain 44211 chrUn_GL000214v1 137718 + 5805 6318 MER9a2 513 + 0 513 32005 513 chain 148887 chrUn_GL000214v1 137718 + 7639 9679 HERVK9-int 4720 + 36 3614 12427 13 8 5 4 1 0 66 1 0 5 20 19 10 6 5 312 2 1 195 23 8 289 17 16 512 0 924 230 52 690 274 chain 412183 chrUn_GL000214v1 137718 + 16861 21958 L1PA7 6471 + 1130 6373 5003 31 0 1 96 1 41 250 7 6 683 1 5 246 1 0 77 1 11 57 1 2 256 0 4 649 10 14 113 0 70 411 0 2 132 0 1 463 1 2 49 0 1 631 0 3 6 4 2 58 3 6 108 1 5 698 3 4 49 chain 67047 chrUn_GL000214v1 137718 + 89282 90049 L1PA5 6144 + 5367 6135 24693 435 0 1 332 chain 12849 chrUn_GL000214v1 137718 + 97117 97421 L1PA15 4387 + 4064 4352 65355 40 1 0 26 1 0 55 1 0 4 17 15 13 4 3 33 46 43 20 18 8 5 0 3 20 chain 5019 chrUn_GL000214v1 137718 + 111728 111803 L1PB 1623 + 1378 1451 85566 35 2 1 32 1 0 5 chain 28039 chrUn_KI270742v1 186739 + 15517 15814 AluYa5 310 + 0 296 44802 132 1 0 164 chain 529011 chrUn_KI270742v1 186739 + 95140 101292 L1PA2 6032 + 0 6031 1878 153 16 15 51 5 1 32 5 4 513 137 9 256 0 3 62 0 3 335 0 2 1124 1 2 482 1 2 266 0 3 2713 chain 14844 chrUn_KI270742v1 186739 + 105483 105834 MER57-int 2662 + 2334 2647 62457 8 1 0 57 5 0 25 21 15 65 36 21 12 0 1 5 19 16 16 29 23 27 3 0 22 chain 21048 chrUn_KI270742v1 186739 + 150690 150930 L1PA4 6152 + 5900 6140 55062 240 chain 34869 chrUn_KI270742v1 186739 + 170554 170994 L1PA5 6144 + 5688 6129 38110 122 1 2 178 18 18 121 chain 149850 chrUn_KI270742v1 186739 + 179308 181059 L1PA4 6152 + 4383 6146 12359 411 11 6 11 0 5 231 0 1 256 0 4 86 0 4 300 0 1 118 0 1 220 0 1 107 chain 3361 chrUn_GL000216v2 176608 + 110422 110503 MLT1E1A 663 + 429 536 96484 37 30 56 14 chain 6103 chrUn_GL000218v1 161147 + 6249 6489 Tigger5 388 + 104 336 80716 25 93 91 15 1 0 25 2 0 11 34 31 34 chain 5121 chrUn_GL000218v1 161147 + 27960 28135 Tigger4 2445 + 216 401 85056 6 2 0 11 7 6 28 8 11 12 59 69 42 chain 16750 chrUn_GL000218v1 161147 + 92815 93162 MER57-int 2662 + 2332 2647 60093 92 18 12 68 36 21 12 0 1 5 9 6 26 29 23 27 3 0 22 chain 27460 chrUn_GL000218v1 161147 + 102733 103112 L1MA3 4352 + 3059 3445 45624 41 8 16 286 4 3 40 chain 21235 chrUn_GL000218v1 161147 + 138039 138279 L1PA4 6152 + 5900 6140 54840 240 chain 35494 chrUn_GL000218v1 161147 + 157880 158335 L1PA5 6144 + 5688 6144 37726 122 1 2 169 17 17 146 chain 3234 chrX 156040895 + 10224 10259 LTR12D 1347 + 1142 1177 97637 35 chain 3836 chrX 156040895 + 10325 10369 LTR12D 1347 + 1111 1155 92596 44 chain 36074 chrX 156040895 + 11799 12245 LTR6B 557 + 0 446 37353 359 0 1 40 1 0 46 chain 38573 chrX 156040895 + 23328 24257 LTR2C 499 + 6 478 35661 176 1 4 71 459 0 178 1 0 43 chain 3234 chrX 156040895 + 222621 222656 LTR12D 1347 + 1142 1177 97636 35 chain 3836 chrX 156040895 + 222722 222766 LTR12D 1347 + 1111 1155 92595 44 chain 36074 chrX 156040895 + 224196 224642 LTR6B 557 + 0 446 37352 359 0 1 40 1 0 46 chain 38667 chrX 156040895 + 235396 236325 LTR2C 499 + 6 478 35593 176 1 4 71 459 0 178 1 0 43 chain 21165 chrX 156040895 + 237511 237775 AluSp 311 + 17 282 54930 98 0 3 14 2 0 150 chain 6019 chrX 156040895 + 249721 249821 MER4D0 881 + 1 103 81004 47 8 9 31 3 4 11 chain 28387 chrX 156040895 + 383558 383866 AluY 311 + 3 311 44291 308 chain 7568 chrX 156040895 + 409362 409515 THE1B 368 + 153 307 75939 16 31 30 15 0 4 14 1 0 6 7 6 63 chain 51553 chrX 156040895 + 434395 434992 L1PA3long 6157 + 5516 6142 29021 395 0 5 131 0 24 71 chain 21532 chrX 156040895 + 454568 455221 L1PA7 6471 + 6041 6349 54469 24 345 0 284 chain 50083 chrX 156040895 + 511057 511654 L1PA7 6471 + 5871 6470 29531 147 0 1 302 5 6 143 chain 65736 chrX 156040895 + 520284 521080 L1PA7 6471 + 5593 6391 25025 21 0 2 14 0 1 71 0 1 7 2 0 73 2 3 534 1 0 71 chain 4741 chrX 156040895 + 614608 614768 MER39B 650 + 65 150 87008 7 4 0 39 83 12 27 chain 49820 chrX 156040895 + 669243 669878 L1PA7 6471 + 5821 6455 29630 30 22 22 429 1 0 153 chain 49989 chrX 156040895 + 759897 760517 L1PA7 6471 + 5851 6468 29562 365 0 1 244 4 0 7 chain 32048 chrX 156040895 + 806257 806725 LTR7B 505 + 0 498 40311 175 50 81 20 2 4 63 2 0 16 1 0 139 chain 47592 chrX 156040895 + 855869 856401 L1PA7 6471 + 5908 6440 30444 532 chain 2992 chrX 156040895 + 1001664 1001695 AluJb 308 - 121 152 99939 31 chain 12308 chrX 156040895 + 1066196 1066353 L1PA7 6471 + 6311 6467 66278 35 8 7 114 chain 32641 chrX 156040895 + 1081977 1082412 LTR7 482 + 0 475 39821 103 5 0 7 0 5 50 0 5 60 0 31 158 12 14 30 0 2 10 chain 83674 chrX 156040895 + 1170892 1171940 LTR5A 1029 + 0 1029 20877 146 0 13 50 22 8 153 18 1 591 1 0 67 chain 49308 chrX 156040895 + 1172934 1173586 LTR6A 649 + 0 649 29831 275 1 0 10 1 0 146 10 9 209 chain 35129 chrX 156040895 + 1175447 1176702 LTR2C 499 + 6 487 37939 127 815 40 8 0 1 305 chain 9461 chrX 156040895 + 1179538 1179667 LTR66 600 + 0 141 71587 79 1 13 49 chain 3089 chrX 156040895 + 1191831 1191866 MER4D 903 + 6 41 98874 35 chain 25094 chrX 156040895 + 1191944 1192229 AluYa5 310 + 21 306 49125 285 chain 6608 chrX 156040895 + 1234619 1234698 MER4E1 777 + 346 425 78957 79 chain 147720 chrX 156040895 + 1235046 1237042 SVA_D 2077 + 316 2075 12503 592 1 0 8 3 1 30 11 0 4 0 1 96 0 1 53 0 1 27 0 1 4 161 39 6 0 2 165 1 0 35 31 6 13 4 0 44 1 0 97 76 4 85 0 2 133 1 0 303 5 0 6 chain 7646 chrX 156040895 + 1235875 1235974 SVA_D 2077 + 1339 1487 48257 13 0 49 44 2 0 4 0 1 32 0 1 4 chain 3959 chrX 156040895 + 1235984 1236036 SVA_D 2077 + 1299 1352 51428 6 0 1 46 chain 2514 chrX 156040895 + 1236243 1236274 SVA_D 2077 + 1255 1286 35913 31 chain 5676 chrX 156040895 + 1236433 1236503 SVA_D 2077 + 1415 1537 35913 18 0 49 38 0 3 14 chain 11287 chrX 156040895 + 1273119 1273254 MER4E1 777 + 12 147 68101 135 chain 29333 chrX 156040895 + 1461034 1461413 MLT2A1 477 + 0 373 42833 129 5 1 39 4 1 11 0 1 191 chain 25934 chrX 156040895 + 1480518 1480830 L1PA7 6471 + 6156 6469 47815 38 0 1 274 chain 38349 chrX 156040895 + 1531798 1532712 L1PB1 5432 + 4705 5276 35814 277 40 5 112 293 0 15 13 0 16 28 30 7 2 0 53 2 1 16 1 0 39 chain 6099 chrX 156040895 + 1536072 1536142 MER85 139 + 16 86 80734 70 chain 3085 chrX 156040895 + 1630004 1630042 MER74A 558 + 8 47 98933 21 0 1 17 chain 26749 chrX 156040895 + 1632680 1633015 L1PA6 6164 + 5832 6159 46613 171 8 0 156 chain 31795 chrX 156040895 + 1653948 1654324 MER41A 554 + 0 376 40501 376 chain 12324 chrX 156040895 + 1671590 1671750 LTR7B 505 + 267 426 66257 146 2 1 12 chain 36042 chrX 156040895 + 1686159 1686568 L1PA4 6152 + 5742 6151 37393 409 chain 22648 chrX 156040895 + 1715549 1715891 L1PA8 5853 + 5521 5844 52908 43 1 0 45 2 0 14 1 0 56 1 0 8 2 1 51 14 13 8 1 0 40 11 0 44 chain 39838 chrX 156040895 + 1726879 1727329 L1PA4 6152 + 5691 6140 34787 397 1 0 52 chain 37798 chrX 156040895 + 1730008 1730435 L1PA7 6471 + 6033 6460 36210 427 chain 47169 chrX 156040895 + 1822605 1823192 L1PA7 6471 + 5883 6469 30586 425 1 2 149 2 0 10 chain 19265 chrX 156040895 + 1879961 1880180 L1PA7 6471 + 6242 6461 57275 219 chain 4480 chrX 156040895 + 1892459 1892538 THE1B 368 + 253 327 88446 47 7 1 9 1 2 15 chain 30049 chrX 156040895 + 1907641 1908001 L1PA7 6471 + 6100 6461 42000 184 0 1 17 1 0 131 0 1 27 chain 23295 chrX 156040895 + 1917299 1917583 AluSp 311 + 5 289 51938 284 chain 27254 chrX 156040895 + 2149062 2149418 THE1B 368 + 0 368 45890 44 1 16 114 1 0 125 3 1 68 chain 20655 chrX 156040895 + 2157841 2158133 THE1B 368 + 0 304 55559 44 0 15 32 3 0 78 10 9 98 7 8 20 chain 7233 chrX 156040895 + 2166118 2166238 L1PB1 5432 + 5109 5220 76851 5 1 0 20 1 0 13 1 0 11 9 5 5 2 0 52 chain 13755 chrX 156040895 + 2166734 2167084 L1PB1 5432 + 5105 5420 63942 10 3 0 18 2 1 13 1 0 11 5 1 9 2 0 52 18 16 43 2 1 16 29 16 13 13 10 11 2 0 13 1 0 5 6 6 21 1 0 13 1 0 16 chain 53646 chrX 156040895 + 2177838 2178492 L1PA7 6471 + 5823 6469 28348 226 1 0 263 1 0 147 6 0 10 chain 33196 chrX 156040895 + 2179048 2179514 LTR2B 499 + 9 499 39358 5 1 0 24 0 8 23 3 0 42 3 22 119 3 4 50 5 6 5 1 0 182 chain 61502 chrX 156040895 + 2190275 2191065 L1PA8 5853 + 5071 5853 25985 23 1 0 468 1 0 47 2 0 73 1 0 4 1 0 54 2 1 19 14 13 80 chain 25424 chrX 156040895 + 2218851 2219293 LTR21B 408 + 0 408 48596 61 8 4 4 1 0 28 1 0 5 5 0 124 41 0 14 1 0 4 13 31 70 5 7 4 1 0 52 chain 7466 chrX 156040895 + 2245618 2246135 MER4A1 472 + 288 472 76211 52 409 74 14 0 2 42 chain 46212 chrX 156040895 + 2251161 2251742 LTR10C 591 + 0 591 30956 14 0 5 372 1 2 117 2 1 26 0 5 49 chain 3234 chrX 156040895 + 2270782 2270822 LTR12 884 + 228 268 97626 40 chain 3678 chrX 156040895 + 2270919 2270970 LTR12 884 + 181 274 93757 27 0 42 24 chain 7685 chrX 156040895 + 2272893 2272990 L1PB3 3668 + 3291 3388 75659 97 chain 3806 chrX 156040895 + 2287468 2287516 MLT1D 503 + 0 50 92798 20 0 2 28 chain 3195 chrX 156040895 + 2287624 2287663 MLT1D 503 + 9 50 97937 11 0 2 28 chain 3064 chrX 156040895 + 2287770 2287809 MLT1D 503 + 9 50 99151 11 0 2 28 chain 54838 chrX 156040895 + 2294932 2295586 L1PA7 6471 + 5817 6468 27932 151 0 1 168 1 0 302 0 1 21 4 0 7 chain 60322 chrX 156040895 + 2305269 2305991 L1PA7 6471 + 5739 6461 26287 722 chain 4442 chrX 156040895 + 2313307 2313363 LTR39 781 + 505 564 88641 9 0 3 47 chain 9564 chrX 156040895 + 2316694 2316821 MER85 139 + 0 138 71342 42 0 1 46 1 11 38 chain 23905 chrX 156040895 + 2340047 2340349 L1PA7 6471 + 6168 6469 50934 249 10 0 7 0 9 36 chain 31871 chrX 156040895 + 2344478 2344870 L1PA7 6471 + 6075 6467 40440 24 9 7 30 0 1 320 0 1 9 chain 8537 chrX 156040895 + 2365780 2365895 L1PA8 5853 + 5674 5785 73605 5 1 0 12 1 0 49 2 1 19 1 0 25 chain 18460 chrX 156040895 + 2384701 2384923 L1PA2 6032 + 5808 6032 58150 79 0 2 143 chain 53569 chrX 156040895 + 2419390 2419984 L1PA4 6152 + 5563 6152 28372 583 5 0 6 chain 57778 chrX 156040895 + 2534506 2535187 L1PA7 6471 + 5786 6468 27025 649 3 4 29 chain 3990 chrX 156040895 + 2568511 2568590 MSTB1 431 + 351 431 91520 31 21 22 27 chain 32368 chrX 156040895 + 2599937 2600359 L1PA8 5853 + 5438 5853 40064 124 1 0 46 2 0 74 1 0 5 4 3 50 2 1 19 1 0 93 chain 44716 chrX 156040895 + 2604540 2605070 MER41A 554 + 18 553 31739 390 0 4 18 0 1 122 chain 44678 chrX 156040895 + 2687863 2688381 L1PA7 6471 + 5927 6447 31752 91 0 1 100 0 1 327 chain 4368 chrX 156040895 + 2732049 2732098 MADE1 96 + 45 94 89063 49 chain 47783 chrX 156040895 + 2781060 2781694 PABL_A 660 + 0 660 30368 63 0 5 16 0 9 263 0 1 105 12 14 33 1 3 123 0 7 18 chain 26256 chrX 156040895 + 2850525 2850930 LTR7 482 + 0 475 47344 69 6 95 16 51 0 44 8 40 211 chain 5467 chrX 156040895 + 2866546 2866623 L1MA5A 2387 + 2230 2306 83370 65 1 0 11 chain 4417 chrX 156040895 + 2884151 2884266 L1MA5A 2387 + 2190 2275 88800 16 54 24 45 chain 14525 chrX 156040895 + 2884632 2884808 MER4A1 472 + 296 472 62874 176 chain 4479 chrX 156040895 + 2890077 2890133 MER4E 760 + 693 751 88447 42 0 2 14 chain 28100 chrX 156040895 + 2893615 2894385 L1PB1 5432 + 4933 5427 44717 61 11 6 91 1 0 12 249 14 21 1 0 9 1 0 11 5 1 9 2 0 52 2 1 15 1 0 44 1 0 13 50 34 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 21803 chrX 156040895 + 2901344 2901792 THE1B 368 + 0 368 54095 33 0 1 10 5 20 64 78 0 21 56 39 7 3 0 64 0 2 107 chain 7611 chrX 156040895 + 2911047 2911837 MER4D1 891 + 55 193 75843 42 674 22 74 chain 6427 chrX 156040895 + 2927148 2927240 MER51A 677 + 0 93 79583 41 10 11 41 chain 44060 chrX 156040895 + 2937418 2937991 PABL_B 668 + 92 668 32105 14 4 10 165 1 0 8 1 0 153 1 0 111 0 1 32 6 5 77 chain 24994 chrX 156040895 + 2941554 2941891 MER4E 760 + 416 753 49288 53 8 10 53 4 2 219 chain 56325 chrX 156040895 + 2961373 2962312 MER4E1 777 + 0 777 27480 22 3 0 86 0 2 43 9 12 95 8 0 23 8 4 178 159 0 77 3 9 90 0 1 135 chain 112893 chrX 156040895 + 2980565 2982077 THE1B-int 1605 + 0 1591 16684 12 17 18 202 0 1 4 5 4 61 10 17 71 4 68 34 8 15 796 3 2 4 0 1 281 chain 31189 chrX 156040895 + 3048190 3048791 MER4A1_ 611 + 0 611 40984 45 0 1 78 1 3 78 14 11 34 39 45 18 1 0 4 10 11 27 68 73 108 14 12 49 0 1 13 chain 528410 chrX 156040895 + 3059324 3065435 L1PA6 6164 + 0 6156 1900 184 1 8 29 0 1 195 13 12 36 1 0 278 1 2 465 1 2 461 0 12 528 0 2 2286 1 3 488 0 1 42 0 1 666 0 18 276 0 1 159 chain 17918 chrX 156040895 + 3116155 3116579 L1PB1 5432 + 5032 5427 58734 66 6 7 9 5 0 20 1 0 13 1 0 9 2 0 3 2 0 9 33 39 13 2 1 15 1 0 37 9 8 15 14 1 30 8 5 14 2 1 23 1 0 21 1 0 13 1 0 14 1 0 5 1 0 4 chain 19318 chrX 156040895 + 3119689 3119961 MER57A1 433 + 0 272 57222 222 18 18 32 chain 26537 chrX 156040895 + 3144082 3144434 MER41A 554 + 204 554 46918 199 5 4 123 6 5 19 chain 34122 chrX 156040895 + 3163709 3164141 MLT2A1 477 + 0 469 38617 169 4 1 11 0 1 22 0 1 194 3 41 29 chain 37887 chrX 156040895 + 3172165 3172768 LTR8 732 + 39 731 36153 118 0 6 25 12 13 40 6 9 62 11 38 77 25 80 20 19 16 188 chain 9240 chrX 156040895 + 3228466 3228580 MER41B 635 + 512 626 72034 114 chain 10237 chrX 156040895 + 3273078 3273237 THE1B 368 + 2 162 69933 104 28 29 27 chain 20960 chrX 156040895 + 3275105 3275342 L1PA6 6164 + 4055 4299 55179 58 0 7 179 chain 18219 chrX 156040895 + 3291285 3291598 THE1C 375 + 2 375 58440 106 0 22 8 73 111 126 chain 25614 chrX 156040895 + 3341991 3342349 L1PA8A 6298 + 5913 6289 48294 25 0 19 117 8 7 95 1 8 9 7 0 96 chain 5908 chrX 156040895 + 3381582 3381668 Tigger2a 444 + 182 267 81453 37 5 4 44 chain 25392 chrX 156040895 + 3391732 3392032 AluSp 311 + 11 311 48637 300 chain 36850 chrX 156040895 + 3398692 3399183 MER41A 554 + 0 554 36846 87 5 15 196 0 2 57 8 59 138 chain 30772 chrX 156040895 + 3400436 3400905 MER4D1 891 + 286 891 41331 4 1 0 16 1 0 5 0 1 53 1 0 35 1 0 11 0 136 19 2 1 29 1 8 40 6 3 41 10 10 85 0 1 38 1 0 69 chain 9121 chrX 156040895 + 3493328 3493440 L1P5 443 + 230 342 72302 112 chain 4712 chrX 156040895 + 3493577 3493987 MLT2B4 540 + 344 415 87193 23 50 0 24 289 0 24 chain 2899 chrX 156040895 + 3494051 3494145 MLT2B4 540 + 342 386 100848 19 43 0 8 7 0 17 chain 84078 chrX 156040895 + 3502626 3503921 L1PB1 5432 + 4221 5427 20787 405 3 0 196 0 12 8 0 1 26 0 1 116 2 1 112 21 19 20 1 0 9 1 0 9 8 4 7 2 0 53 85 19 34 8 7 21 19 7 19 3 1 4 1 0 14 2 0 24 1 0 20 2 1 13 1 0 18 2 0 5 chain 3313 chrX 156040895 + 3503649 3503687 L1PB1 5432 + 5178 5216 96896 38 chain 4334 chrX 156040895 + 3513838 3513889 MADE1 96 + 45 96 89273 51 chain 9727 chrX 156040895 + 3537913 3538044 LTR9B 643 + 428 561 70987 47 0 1 55 1 2 28 chain 7192 chrX 156040895 + 3550875 3550981 MER66A 478 + 373 478 76969 77 7 6 22 chain 54788 chrX 156040895 + 3558107 3558701 L1PA2 6032 + 5432 6027 27952 470 0 1 124 chain 16958 chrX 156040895 + 3571504 3571768 Tigger3a 397 + 30 377 59853 62 13 93 148 17 20 24 chain 7036 chrX 156040895 + 3584698 3584815 MER1A 529 + 32 150 77480 30 22 23 65 chain 3832 chrX 156040895 + 3586334 3586377 MER53 195 + 150 193 92624 43 chain 16907 chrX 156040895 + 3591321 3591589 LTR7 482 + 164 477 59905 43 5 16 31 7 38 13 0 1 56 4 5 52 13 14 44 chain 3082 chrX 156040895 + 3596422 3596485 MER20 218 + 32 76 98965 10 19 0 34 chain 4684 chrX 156040895 + 3601583 3601648 L1MA5A 2387 + 2241 2305 87358 54 1 0 10 chain 3387 chrX 156040895 + 3603871 3603912 MER58A 224 + 70 111 96214 41 chain 13139 chrX 156040895 + 3626969 3627467 L1MA5A 2387 + 1590 1778 64867 46 3 0 58 4 0 41 303 0 43 chain 43566 chrX 156040895 + 3701589 3702122 MER41A 554 + 13 546 32404 533 chain 5421 chrX 156040895 + 3804447 3804520 L1MA5A 2387 + 2234 2306 83601 61 1 0 11 chain 25833 chrX 156040895 + 3808974 3809358 LTR7 482 + 0 475 47966 101 10 14 17 0 51 41 5 37 44 0 1 76 0 2 35 14 15 41 chain 117761 chrX 156040895 + 3839970 3841488 THE1A-int 1579 + 0 1579 15925 15 0 2 171 1 0 4 0 1 261 1 2 46 5 4 49 0 27 57 0 8 567 3 13 223 0 14 48 1 0 57 0 1 9 chain 37362 chrX 156040895 + 3858907 3859382 LTR2B 499 + 5 497 36512 7 0 1 58 3 0 40 3 22 175 0 1 8 1 0 180 chain 117883 chrX 156040895 + 3878394 3879912 THE1A-int 1579 + 0 1579 15903 15 0 2 171 1 0 4 0 1 261 1 2 46 5 4 49 0 27 57 0 8 567 3 13 223 0 14 48 1 0 57 0 1 9 chain 37362 chrX 156040895 + 3897331 3897806 LTR2B 499 + 5 497 36511 7 0 1 58 3 0 40 3 22 175 0 1 8 1 0 180 chain 117761 chrX 156040895 + 3916823 3918341 THE1A-int 1579 + 0 1579 15924 15 0 2 171 1 0 4 0 1 261 1 2 46 5 4 49 0 27 57 0 8 567 3 13 223 0 14 48 1 0 57 0 1 9 chain 37362 chrX 156040895 + 3935770 3936245 LTR2B 499 + 5 497 36510 7 0 1 58 3 0 40 3 22 175 0 1 8 1 0 180 chain 61687 chrX 156040895 + 3964353 3965113 MER4E1 777 + 0 769 25946 20 1 3 73 0 1 254 2 1 190 2 9 218 chain 37936 chrX 156040895 + 3965874 3966315 LTR2 463 + 2 463 36113 160 0 21 6 1 0 274 chain 514485 chrX 156040895 + 3968689 3975709 HERVE_a-int 7009 + 186 6997 2545 73 11 7 25 8 6 4 1 0 8 1 0 14 47 37 18 28 0 35 4 2 24 1 0 45 1 0 22 1 0 52 1 0 34 1 0 98 1 0 12 1 0 15 2 1 4 0 1 25 15 13 55 2 0 27 1 0 66 1 0 27 1 0 8 1 0 73 2 1 32 1 0 30 10 8 16 2 1 51 1 0 21 1 0 15 4 2 4 1 0 12 4 0 27 2 0 14 1 0 23 1 0 5 1 0 7 1 0 10 2 1 4 1 0 5 1 0 55 4 2 57 1 0 23 1 0 16 1 0 114 2 1 19 1 0 19 2 1 10 2 1 18 1 0 4 5 7 4 1 0 10 9 8 29 16 15 39 1 0 10 0 3 47 2 1 35 1 0 5 1 0 37 1 0 46 1 0 21 1 0 17 1 0 24 1 0 13 1 0 93 2 1 23 11 9 26 16 8 17 7 5 6 1 0 136 11 10 14 1 0 38 1 0 168 1 0 170 18 8 6 1 0 221 1 0 88 1 0 495 1 0 521 69 69 1164 9 0 111 1 0 29 1 0 8 1 0 72 1 0 10 4 0 41 1 0 22 2 1 87 3 2 10 1 0 253 8 6 101 1 0 15 1 0 3 1 0 75 1 0 14 1 0 77 5 3 136 1 0 44 1 0 32 1 0 9 5 4 13 1 0 5 2 0 7 1 0 39 1 0 19 1 0 47 5 3 27 8 6 55 2 1 9 4 0 26 3 0 54 3 1 26 1 0 31 1 0 6 17 14 24 2 0 34 4 2 15 32 24 25 2 0 6 chain 39299 chrX 156040895 + 3975727 3976187 LTR2 463 + 0 463 35147 55 0 3 405 chain 134743 chrX 156040895 + 3981709 3983497 L1P3 4156 + 5 1796 13562 232 20 27 47 10 9 82 23 0 68 1 0 104 3 0 165 0 5 99 1 0 135 4 5 267 12 31 515 chain 4715 chrX 156040895 + 3985017 3985076 MLT1C 463 + 43 102 87168 59 chain 27320 chrX 156040895 + 4026669 4027048 L1PA16 3655 + 3201 3579 45802 85 22 20 203 0 1 69 chain 36833 chrX 156040895 + 4038009 4038502 LTR3B_ 500 + 6 500 36858 143 12 13 140 2 1 29 4 1 9 12 16 142 chain 3894 chrX 156040895 + 4108451 4108496 MADE1 96 + 51 96 92182 45 chain 24115 chrX 156040895 + 4132614 4133001 MLT2A2 560 + 0 500 50625 169 68 67 59 0 98 13 0 11 41 0 5 37 chain 111727 chrX 156040895 + 4155072 4156398 L1PA7 6471 + 5134 6469 16846 186 0 1 300 1 0 82 0 1 110 4 7 141 0 4 357 0 1 145 chain 36125 chrX 156040895 + 4173032 4173580 MER1A 529 + 0 529 37326 13 46 36 32 0 4 192 0 1 171 31 17 63 chain 15242 chrX 156040895 + 4204761 4204958 Tigger2 2703 + 2334 2531 61991 197 chain 16773 chrX 156040895 + 4218245 4218525 L1PA15 4387 + 4104 4366 60064 26 1 0 55 1 0 19 4 0 12 1 0 40 17 14 43 2 0 12 9 4 27 1 0 10 chain 22689 chrX 156040895 + 4226927 4227613 L1PB1 5432 + 4933 5413 52838 94 19 20 5 1 0 51 236 55 11 3 1 50 2 1 16 4 3 40 1 0 16 1 0 4 2 0 13 51 37 20 1 0 22 1 0 12 1 0 9 chain 35727 chrX 156040895 + 4243899 4244396 MER1A 529 + 31 524 37585 40 0 14 9 3 0 4 8 0 359 16 9 58 chain 7722 chrX 156040895 + 4261796 4261909 MLT1A0 366 + 25 139 75556 7 1 0 10 4 6 91 chain 121584 chrX 156040895 + 4364592 4365941 L1PA4 6152 + 4788 6141 15242 494 0 4 855 chain 25436 chrX 156040895 + 4383912 4384281 THE1B 368 + 0 368 48574 151 4 5 13 1 0 21 4 2 8 1 0 10 0 4 8 9 8 10 1 0 128 chain 51733 chrX 156040895 + 4435997 4436652 PABL_B 668 + 15 668 28959 266 1 0 71 1 0 29 0 1 146 0 1 68 1 0 52 3 2 17 chain 203665 chrX 156040895 + 4452586 4455208 L1PA10 4194 + 382 3018 9583 13 0 1 7 1 0 79 4 2 138 10 11 403 0 9 111 1 0 428 5 6 843 1 2 175 1 2 59 0 4 343 chain 15728 chrX 156040895 + 4482642 4482974 L1PB1 5432 + 5114 5416 61374 20 1 0 12 1 0 12 17 11 51 2 1 14 2 1 44 1 0 16 1 0 6 1 0 9 9 0 11 13 10 14 2 0 24 1 0 21 1 0 6 8 7 12 chain 44136 chrX 156040895 + 4537358 4537935 MER41A 554 + 0 554 32058 86 28 10 173 0 1 197 7 1 86 chain 18031 chrX 156040895 + 4557354 4557746 L1PB1 5432 + 5068 5427 58622 35 1 2 9 1 0 24 1 0 6 20 15 8 2 0 53 18 16 44 1 0 16 26 12 15 1 4 4 1 0 15 2 0 24 1 0 21 1 0 13 4 0 18 2 0 5 chain 18139 chrX 156040895 + 4642860 4643142 THE1D 372 + 0 372 58523 94 37 130 50 3 0 98 chain 26894 chrX 156040895 + 4745028 4745527 L1PB1 5432 + 4847 5277 46415 230 68 9 12 20 16 24 1 0 6 1 0 12 2 0 3 2 0 9 2 0 45 9 8 11 1 4 41 chain 4344 chrX 156040895 + 4785098 4785166 MER1B 344 + 0 81 89215 12 11 24 45 chain 21986 chrX 156040895 + 4785599 4785853 LTR13A 966 + 0 254 53853 254 chain 28593 chrX 156040895 + 4823242 4823607 THE1A 353 + 0 353 43967 109 2 1 150 12 1 92 chain 18794 chrX 156040895 + 4824874 4825132 THE1B 368 + 0 272 57787 44 6 21 101 7 6 100 chain 128191 chrX 156040895 + 4847063 4848549 L1PA6 6164 + 4662 6161 14254 845 0 2 236 0 1 59 0 10 346 chain 16516 chrX 156040895 + 4854954 4855187 MER30 238 + 0 238 60348 100 19 27 65 3 0 46 chain 73535 chrX 156040895 + 4859496 4860414 L1PA8A 6298 + 5378 6291 23210 106 2 0 101 17 16 95 0 2 87 5 1 505 chain 41470 chrX 156040895 + 4891613 4892064 LTR7 482 + 0 482 33693 247 0 31 204 chain 297394 chrX 156040895 + 4892066 4895619 HERVH-int 3825 + 0 3825 6906 181 4 8 23 0 11 309 5 0 38 1 0 10 1 0 24 1 14 13 3 0 26 1 0 41 3 2 49 0 1 13 0 2 14 0 3 258 2 0 401 0 1 241 8 33 299 0 10 428 0 1 276 0 1 339 9 11 39 4 214 264 0 2 225 chain 40621 chrX 156040895 + 4896882 4897331 LTR7 482 + 0 481 34204 225 0 1 35 0 31 189 chain 25081 chrX 156040895 + 4912296 4912660 THE1C 375 + 13 375 49149 50 14 16 46 13 10 215 1 0 25 chain 9237 chrX 156040895 + 4922249 4922372 L1PBa1 4058 + 85 209 72042 84 1 0 11 0 2 27 chain 43095 chrX 156040895 + 4957547 4958041 L1PA5 6144 + 5634 6128 32717 494 chain 5147 chrX 156040895 + 5001665 5001803 MSTB1 431 + 37 176 84920 20 22 24 30 34 33 32 chain 26617 chrX 156040895 + 5005420 5005787 THE1C 375 + 0 374 46807 107 2 3 20 0 3 67 13 16 50 0 1 82 1 0 25 chain 168395 chrX 156040895 + 5107380 5109190 L1PA2 6032 + 4220 6030 11199 1810 chain 10519 chrX 156040895 + 5130525 5130655 MER41A 554 + 102 232 69385 130 chain 63132 chrX 156040895 + 5156398 5157149 MER4E 760 + 0 750 25595 17 2 0 352 0 2 73 1 0 306 chain 36407 chrX 156040895 + 5162920 5163388 LTR2B 499 + 9 499 37137 5 1 0 60 5 2 35 0 19 52 6 13 113 0 1 8 1 0 182 chain 14513 chrX 156040895 + 5227481 5227678 L1PB4 2604 + 2376 2570 62888 9 2 0 167 1 0 18 chain 9892 chrX 156040895 + 5232982 5233106 MER85 139 + 5 139 70634 85 0 10 39 chain 33708 chrX 156040895 + 5247176 5247580 LTR2 463 + 0 405 38920 362 12 13 30 chain 16942 chrX 156040895 + 5268476 5268731 Tigger4 2445 + 201 447 59867 21 2 0 13 3 0 8 3 0 41 5 4 159 chain 25544 chrX 156040895 + 5293455 5293837 THE1D 372 + 0 371 48419 52 35 26 109 4 0 10 1 3 171 chain 4357 chrX 156040895 + 5320870 5320916 MER41B 635 + 481 527 89128 46 chain 3088 chrX 156040895 + 5336325 5336372 L1MC3 1789 + 825 865 98882 6 7 0 34 chain 53385 chrX 156040895 + 5373641 5374312 PABL_B 668 + 0 668 28439 150 2 0 41 8 4 86 1 0 238 0 4 145 chain 50008 chrX 156040895 + 5387548 5388170 PABL_B 668 + 0 668 29558 233 2 45 73 1 0 86 0 3 154 0 1 73 chain 4188 chrX 156040895 + 5393779 5393894 MLT1A 405 + 218 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6944041 6944405 THE1D 372 + 2 372 48802 13 0 2 148 24 29 139 8 7 32 chain 44178 chrX 156040895 + 6985787 6986345 MER41A 554 + 0 554 32030 404 15 11 139 chain 45691 chrX 156040895 + 7017762 7018307 MER41A 554 + 0 552 31213 377 0 1 90 0 5 25 1 2 52 chain 40088 chrX 156040895 + 7018741 7019279 MER41C 542 + 0 542 34599 49 0 1 173 0 1 89 2 0 6 7 10 26 8 7 116 0 2 62 chain 28482 chrX 156040895 + 7067743 7068112 THE1B 368 + 0 368 44154 168 12 11 189 chain 3148 chrX 156040895 + 7124594 7124631 MLT1D 503 + 457 494 98378 37 chain 27499 chrX 156040895 + 7365433 7365803 THE1B 368 + 10 368 45583 162 2 1 19 4 0 55 11 4 117 chain 122217 chrX 156040895 + 7365804 7367376 THE1B-int 1605 + 1 1605 15161 422 3 28 318 1 0 6 10 11 354 0 4 248 7 8 78 0 1 108 0 1 17 chain 26806 chrX 156040895 + 7367378 7367738 THE1B 368 + 2 368 46529 170 2 1 9 12 10 118 0 10 8 1 0 40 chain 10726 chrX 156040895 + 7401525 7401757 L1PA15 4387 + 4093 4314 68999 11 1 0 26 4 3 51 8 7 17 14 9 28 31 28 41 chain 66998 chrX 156040895 + 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8213287 8213760 LTR2 463 + 0 463 36433 57 2 1 181 6 0 22 2 0 119 0 1 30 1 0 28 1 0 24 chain 101083 chrX 156040895 + 8270966 8272097 L1PA5 6144 + 5017 6143 18177 166 3 0 949 3 1 10 chain 175369 chrX 156040895 + 8291677 8294089 L1PBa 3878 + 1386 3727 10811 29 8 10 7 0 4 169 11 12 5 2 0 932 80 5 144 0 5 7 2 9 57 20 0 16 0 3 232 0 1 7 8 8 121 4 0 51 3 0 197 11 17 90 0 1 4 0 3 149 0 1 33 2 1 11 chain 22618 chrX 156040895 + 8311018 8311360 THE1B 368 + 14 368 52958 161 1 0 16 3 1 6 0 3 9 0 4 13 0 10 6 2 1 62 19 18 44 chain 50378 chrX 156040895 + 8373168 8373769 LTR14B 630 + 10 613 29417 305 1 4 233 1 0 61 chain 53591 chrX 156040895 + 8401223 8401825 L1PA4 6152 + 5542 6143 28364 361 1 0 240 chain 3435 chrX 156040895 + 8403227 8403265 MER58A 224 + 45 83 95780 38 chain 21613 chrX 156040895 + 8416401 8416749 THE1B 368 + 8 368 54335 56 15 18 87 1 0 21 51 61 117 chain 12178 chrX 156040895 + 8494556 8494825 MER44D 709 + 442 709 66514 33 35 41 87 1 0 5 22 16 57 17 16 12 chain 6432 chrX 156040895 + 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16 4 0 11 10 1 15 10 8 15 2 0 24 1 0 21 1 0 13 1 0 8 chain 4437 chrX 156040895 + 8849707 8849763 LTR24C 604 + 548 604 88690 56 chain 18904 chrX 156040895 + 8895368 8895611 L1PA8A 6298 + 6047 6291 57633 142 1 2 51 8 8 41 chain 28918 chrX 156040895 + 8920313 8920819 MLT2A1 477 + 19 477 43459 98 1 0 4 0 1 16 0 1 31 4 1 54 1 0 7 5 13 124 0 1 8 97 43 56 chain 3717 chrX 156040895 + 8921651 8921692 MER58A 224 + 50 91 93487 41 chain 5813 chrX 156040895 + 8929203 8929269 L1PB1 5432 + 4945 5011 81857 66 chain 5159 chrX 156040895 + 8929312 8929376 L1P5 443 + 336 400 84865 64 chain 25617 chrX 156040895 + 8968053 8968516 L1PA15 4387 + 3925 4366 48287 7 1 0 81 0 3 36 7 1 30 23 22 25 1 0 55 1 0 22 4 0 10 1 0 42 14 11 38 9 7 11 7 3 25 2 1 11 chain 25960 chrX 156040895 + 8979921 8980198 L1PA2 6032 + 5755 6032 47777 277 chain 30641 chrX 156040895 + 9016495 9017004 L1PB1 5432 + 4897 5375 41435 205 0 1 10 4 1 21 1 0 12 1 0 6 10 6 10 6 4 47 3 2 14 1 0 37 8 7 16 3 0 6 16 6 19 7 4 15 2 0 29 chain 9309 chrX 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11600 chrX 156040895 + 9976863 9977114 MER2 342 + 91 342 67567 20 1 0 92 78 79 13 1 2 4 1 0 41 chain 10399 chrX 156040895 + 9988798 9988931 Tigger1 2417 + 1793 1927 69622 105 0 1 28 chain 8025 chrX 156040895 + 10061231 10061322 HY3 101 + 10 101 74824 91 chain 5810 chrX 156040895 + 10216618 10216698 MADE1 96 + 0 96 81876 42 1 17 37 chain 81577 chrX 156040895 + 10226058 10227169 L1P3 4156 + 2971 4072 21318 190 4 1 342 11 2 40 13 17 105 4 5 109 0 6 77 4 0 192 5 0 15 chain 6606 chrX 156040895 + 10249382 10249465 MLT1D 503 + 36 120 78959 48 0 1 35 chain 14152 chrX 156040895 + 10275902 10276173 L1PB1 5432 + 5174 5422 63375 46 1 2 4 2 0 10 1 0 45 1 0 15 23 12 18 15 12 8 2 0 24 1 0 22 1 0 12 1 0 14 1 0 4 chain 18702 chrX 156040895 + 10295486 10295869 MSTA 426 + 6 419 57895 101 13 37 62 49 43 27 8 1 21 39 58 63 chain 33064 chrX 156040895 + 10301882 10302774 L1PREC2 3366 + 2409 2962 39464 9 0 3 189 0 1 56 332 15 30 1 0 40 2 0 42 22 21 35 4 0 17 29 21 17 6 1 16 2 0 29 4 1 10 chain 13080 chrX 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chrX 156040895 + 11707248 11713279 L1HS 6032 + 0 6032 6 74 0 1 5957 chain 12431 chrX 156040895 + 11802668 11802846 L1MA7 2200 + 1573 1760 66097 124 15 24 39 chain 248562 chrX 156040895 + 11845330 11848042 L1PA3long 6157 + 3445 6157 8277 2712 chain 176378 chrX 156040895 + 11852592 11857334 L1PA13 3608 + 1053 3485 10758 247 1 5 207 1 5 46 0 4 317 0 13 34 3 4 13 32 37 362 3 0 101 2324 0 91 1 0 4 0 1 34 0 1 102 2 0 447 1 0 32 1 0 115 3 1 60 2 1 55 1 0 4 2 0 47 2 0 5 5 3 16 1 0 18 chain 4083 chrX 156040895 + 11874080 11874157 MER2 342 + 87 154 90882 16 14 5 10 1 0 36 chain 25780 chrX 156040895 + 11887266 11887609 MER83C 372 + 0 331 48053 160 12 0 171 chain 9409 chrX 156040895 + 11917065 11917237 L1PA17 2846 + 2526 2693 71678 7 1 0 7 1 2 42 23 20 27 1 0 18 1 0 44 chain 239229 chrX 156040895 + 11924123 11927597 L1PA13 3608 + 95 3541 8490 14 6 4 23 2 0 6 2 1 20 21 17 21 44 59 31 2 0 128 3 2 7 1 0 17 2 0 17 30 25 13 3 1 15 3 1 15 1 0 99 2 0 110 0 2 93 0 3 188 0 3 16 0 1 66 13 4 60 2 0 114 0 3 5 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108 1 0 12 3 0 20 1 0 12 1 0 12 4 0 9 2 0 53 2 1 15 1 0 44 1 0 16 24 12 19 11 8 11 2 0 24 1 0 21 1 0 13 1 0 14 chain 7894 chrX 156040895 + 12525276 12525371 MER49 923 + 151 249 75124 8 0 3 87 chain 3385 chrX 156040895 + 12532957 12532997 Charlie4a 502 + 384 424 96231 40 chain 124584 chrX 156040895 + 12533384 12534953 THE1B-int 1605 + 0 1600 14765 25 3 0 5 0 5 395 1 26 25 0 1 148 0 1 420 0 1 214 1 0 7 0 1 313 0 1 12 chain 18803 chrX 156040895 + 12534958 12535350 THE1B 368 + 0 368 57775 44 6 21 86 24 2 13 3 2 16 87 71 113 chain 527976 chrX 156040895 + 12537884 12544242 L1PA5 6144 + 3 6140 1915 116 16 48 253 0 1 110 0 2 285 0 17 14 0 3 238 9 27 316 2 1 311 1 0 77 300 0 934 0 1 1193 0 2 271 0 1 116 0 4 65 4 0 114 0 1 104 1 0 851 0 3 330 0 1 327 chain 4871 chrX 156040895 + 12614411 12614503 MER5A1 166 + 26 138 86320 51 18 38 23 chain 5146 chrX 156040895 + 12615769 12615849 MADE1 96 - 0 96 84925 38 5 21 37 chain 226768 chrX 156040895 + 12665586 12671740 L1PA7 6471 + 2112 6465 8846 48 1 5 179 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0 60 1 4 386 15 0 200 9 0 26 0 2 13 1 0 216 1 6 240 11 0 844 0 5 289 9 11 39 8 218 136 0 2 122 0 2 146 0 1 78 chain 30907 chrX 156040895 + 12945126 12945537 LTR7 482 + 0 482 41212 69 8 46 109 0 1 39 0 31 11 1 2 174 chain 6508 chrX 156040895 + 12953024 12953102 LTR49 580 + 501 579 79316 78 chain 157519 chrX 156040895 + 12962604 12964435 SVA_D 2077 + 1 2074 11914 16 9 2 16 3 6 427 5 0 306 0 40 106 1 38 35 1 0 10 0 178 207 0 1 4 15 14 36 1 2 623 4 0 6 chain 34343 chrX 156040895 + 12985920 12986337 MLT2A1 477 + 0 475 38459 153 0 1 15 4 1 213 0 60 32 chain 21054 chrX 156040895 + 12989972 12990323 MSTC 436 + 0 371 55057 96 30 31 33 13 30 124 2 0 11 13 17 29 chain 26480 chrX 156040895 + 13016647 13017078 MER57A1 433 + 1 433 47013 233 91 92 107 chain 9585 chrX 156040895 + 13048177 13048322 MER20 218 + 31 178 71290 40 9 11 5 2 0 73 0 2 16 chain 8758 chrX 156040895 + 13092544 13092666 MER20 218 + 42 157 73085 41 3 0 6 4 0 68 chain 5153 chrX 156040895 + 13114461 13114538 MER65C 458 + 0 78 84897 54 7 8 16 chain 26480 chrX 156040895 + 13176282 13176636 THE1A 353 + 0 353 47011 109 6 5 88 1 0 111 2 3 37 chain 420287 chrX 156040895 + 13181938 13187120 L1PA8 5853 + 50 5824 4875 22 2 0 8 46 0 9 10 19 197 0 4 292 0 4 549 7 6 99 0 1 258 21 5 495 3 0 140 2 0 691 0 1 38 1 0 180 67 711 231 1 0 44 0 8 948 2 0 219 0 1 334 2 1 43 2 0 71 1 0 61 2 1 19 1 0 64 chain 63885 chrX 156040895 + 13198534 13199430 MER4D1 891 + 0 883 25434 27 1 2 19 9 10 54 16 14 101 1 0 42 1 0 275 10 10 113 1 0 65 11 1 150 chain 52426 chrX 156040895 + 13210057 13210670 L1PA6 6164 + 5548 6162 28749 19 0 1 594 chain 4481 chrX 156040895 + 13238096 13238229 MER5A1 166 + 0 136 88441 19 4 5 8 6 0 8 47 55 41 chain 3949 chrX 156040895 + 13348225 13348300 L1ME1 1623 + 1415 1484 91761 16 20 14 39 chain 363214 chrX 156040895 + 13404596 13409123 L1PA8 5853 + 50 5853 5762 21 2 0 11 1 0 13 34 13 54 10 10 130 36 24 97 0 3 173 0 4 42 0 6 6 1 0 516 0 324 394 0 1 13 0 2 118 1 0 852 6 5 83 0 2 398 0 1 229 0 2 273 4 5 102 0 995 12 0 4 21 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156040895 + 13939201 13939268 MER5B 177 + 95 163 90578 24 9 10 34 chain 95654 chrX 156040895 + 13945530 13946583 L1PA5 6144 + 4909 5962 18821 1053 chain 218635 chrX 156040895 + 13976483 13978924 L1P1 4361 + 1788 4230 9077 748 2 1 621 2 1 349 1 2 88 0 1 30 0 2 520 1 0 79 chain 95927 chrX 156040895 + 13981935 13983311 MER57-int 2662 + 1225 2625 18781 50 0 1 367 9 11 244 0 1 6 3 4 32 0 3 46 0 45 19 0 7 231 0 1 39 2 0 10 7 4 73 25 19 66 28 14 25 2 0 6 1 0 9 4 1 24 1 0 6 16 11 25 chain 24574 chrX 156040895 + 13983690 13983988 MER57A1 433 + 0 300 49891 282 0 2 16 chain 171512 chrX 156040895 + 14034320 14036777 L1MA2 4263 + 712 4104 11021 132 1 0 73 0 2 52 6 5 128 6 11 110 0 655 83 23 6 74 11 12 46 0 11 114 4 287 8 2 0 12 0 2 5 0 1 12 0 4 56 0 1 30 1 0 4 8 11 122 1 6 180 12 10 101 0 6 148 7 5 271 13 6 60 2 0 10 9 4 74 1 0 140 3 0 55 0 1 98 11 9 92 14 7 11 2 1 8 0 9 11 chain 41969 chrX 156040895 + 14085987 14086448 L1PA2 6032 + 4751 5213 33373 427 0 1 34 chain 17861 chrX 156040895 + 14183723 14184044 L1PA13 3608 + 3256 3548 58813 17 2 0 62 1 0 51 1 0 10 2 0 47 2 0 5 2 0 18 1 0 22 26 18 12 1 0 6 7 1 10 4 1 12 chain 21849 chrX 156040895 + 14195551 14195898 THE1D 372 + 0 355 54042 165 61 69 121 chain 26696 chrX 156040895 + 14205553 14205873 L1P2 5180 + 724 1084 46690 59 0 15 129 0 25 132 chain 18776 chrX 156040895 + 14268107 14268457 L1PB1 5432 + 5106 5422 57817 8 3 0 20 1 0 12 1 0 10 2 0 3 2 0 9 2 0 52 7 6 11 1 0 44 1 0 15 1 0 6 17 6 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 chain 3496 chrX 156040895 + 14321843 14321893 MER58B 340 + 292 340 95277 34 2 0 14 chain 24147 chrX 156040895 + 14343416 14343733 THE1B 368 + 0 333 50578 25 1 0 4 1 2 13 0 15 110 1 0 29 0 2 133 chain 462952 chrX 156040895 + 14369695 14375230 L1PA7 6471 + 787 6461 4051 115 21 36 139 0 1 379 0 7 532 0 18 123 1 0 128 1 0 373 1 2 125 6 0 56 0 1 353 6 105 259 0 1 387 1 0 4 0 1 1023 2 6 164 5 0 422 0 1 66 2 0 13 0 1 41 0 3 137 0 5 167 0 1 402 0 1 8 13 8 60 chain 440686 chrX 156040895 + 14391832 14396841 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40 7 13 72 1 0 87 2 0 45 0 1 77 6 10 153 3 0 12 chain 15256 chrX 156040895 + 16621275 16621446 L1PA6 6164 + 5977 6149 61970 65 0 1 106 chain 4753 chrX 156040895 + 16627013 16627088 MADE1 96 - 5 96 86945 33 8 24 34 chain 3662 chrX 156040895 + 16644099 16644139 MLT1D 503 + 76 116 93896 40 chain 5329 chrX 156040895 + 16653612 16653724 MER5A 189 + 70 175 84057 52 38 31 22 chain 11439 chrX 156040895 + 16671288 16671443 MER41A 554 + 398 554 67852 32 6 7 117 chain 158614 chrX 156040895 + 16673735 16677531 MER41-int 2638 + 86 2638 11836 18 24 15 25 0 3 23 27 13 16 16 15 18 2 0 14 2 9 35 9 5 151 7 0 13 1 0 16 1134 203 50 0 4 51 10 8 18 8 22 90 0 1 107 0 1 5 4 5 59 1 4 110 0 1 90 14 20 26 2 0 138 4 0 86 4 0 92 1 0 191 1 0 59 0 1 116 1 0 34 6 1 19 1 0 81 2 1 6 308 0 144 0 7 125 1 2 24 0 1 54 0 4 102 chain 7042 chrX 156040895 + 16674870 16674983 PABL_A-int 1935 + 441 556 77470 24 11 14 68 1 0 9 chain 37027 chrX 156040895 + 16677541 16677993 MER41A 554 + 13 467 36720 79 0 1 284 1 2 88 chain 3066 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70 11 17 40 chain 8063 chrX 156040895 + 19376773 19376869 HY3 101 + 0 96 74712 96 chain 48894 chrX 156040895 + 19383505 19384428 L1MA2 4263 + 3439 4218 29979 146 6 0 47 4 2 28 1 0 147 3 0 146 22 20 83 8 1 10 1 2 34 1 0 9 195 74 15 1 0 3 1 0 12 chain 6161 chrX 156040895 + 19416746 19416824 Tigger2 2703 + 2542 2632 80482 18 0 12 60 chain 473347 chrX 156040895 + 19417065 19422394 L1PA4 6152 + 7 5354 3781 364 0 2 1049 0 5 13 1 0 1598 0 1 144 1 0 68 0 3 239 0 4 276 0 1 475 0 1 12 0 3 1089 chain 28562 chrX 156040895 + 19447601 19447909 AluYa5 310 + 0 307 44013 97 1 0 210 chain 11511 chrX 156040895 + 19452783 19452949 MER30 238 + 46 232 67728 58 7 21 24 4 10 73 chain 254245 chrX 156040895 + 19509243 19512329 L1PA8 5853 + 2338 5853 8128 147 0 4 393 1 0 316 0 4 19 4 10 84 1 28 63 0 12 100 1 2 76 0 2 306 0 2 217 0 373 511 0 2 85 15 14 456 1 0 44 2 0 70 8 1 8 0 1 4 1 0 5 0 5 38 0 4 16 2 1 92 chain 30513 chrX 156040895 + 19635189 19635530 L1PA8A 6298 + 5950 6291 41553 341 chain 6516 chrX 156040895 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156040895 + 20706782 20707052 AluY 311 + 39 311 52312 93 0 1 11 0 1 166 chain 27818 chrX 156040895 + 20707371 20707743 THE1B 368 + 0 367 45158 15 2 0 157 5 4 23 2 0 168 chain 236808 chrX 156040895 + 20722159 20724760 L1PA3long 6157 + 3557 6157 8548 498 1 0 2102 chain 23612 chrX 156040895 + 20749019 20749277 L1PA5 6144 + 5872 6130 51410 258 chain 278469 chrX 156040895 + 20756893 20760264 L1PA4 6152 + 2468 5881 7475 448 2 0 340 0 1 29 0 1 46 260 302 47 1 0 1499 0 1 699 chain 23306 chrX 156040895 + 20757758 20758015 L1PA4 6152 - 1704 1961 51609 257 chain 7559 chrX 156040895 + 20770865 20770991 L1MA4 2864 + 1884 2012 75965 61 12 8 30 0 1 9 1 6 13 chain 511136 chrX 156040895 + 20771374 20777313 L1PA5 6144 + 219 6134 2706 189 3 6 6 3 0 498 0 4 30 24 0 217 9 0 1025 0 2 528 0 1 307 0 1 4 1 0 133 1 0 332 1 0 540 1 0 277 0 1 971 0 4 839 chain 14534 chrX 156040895 + 20778779 20779123 L1MA4 2864 + 2479 2801 62864 18 3 2 10 7 6 140 113 94 19 1 0 33 chain 40156 chrX 156040895 + 20784397 20784849 L1PA3long 6157 + 5707 6152 34554 296 7 0 149 chain 27176 chrX 156040895 + 20798871 20799219 THE1C 375 + 0 347 46004 180 1 0 6 1 0 98 0 1 62 chain 37582 chrX 156040895 + 20799248 20799826 THE1C-int 1605 + 0 510 36348 12 5 6 34 0 1 154 0 3 235 86 13 52 chain 2926 chrX 156040895 + 20801669 20801705 MIR 256 + 136 172 100618 36 chain 40491 chrX 156040895 + 20818222 20818889 L1PB1 5432 + 4782 5420 34315 23 0 1 113 0 9 175 3 2 11 7 0 18 1 0 12 1 0 12 5 1 8 2 0 52 1 0 14 8 7 31 16 15 10 1 0 4 2 0 8 9 0 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 490061 chrX 156040895 + 20845443 20850991 L1PA4 6152 + 0 5517 3421 580 1 0 182 5 6 66 17 0 271 17 0 841 0 2 3267 1 2 300 chain 26365 chrX 156040895 + 20859798 20860128 L1P1 4361 + 4023 4341 47170 23 9 0 104 1 0 155 1 0 23 2 1 12 chain 22448 chrX 156040895 + 20862173 20862540 THE1D 372 + 0 372 53203 25 2 4 131 31 34 12 17 18 116 1 0 32 chain 2848 chrX 156040895 + 20863419 20863470 MLT1A0 366 + 290 342 101253 10 1 0 14 3 5 23 chain 273563 chrX 156040895 + 20868791 20872282 HERVL-int 5654 + 13 3710 7619 402 11 7 177 7 8 239 0 1 450 6 2 534 0 3 102 3 212 499 42 41 5 0 1 1014 chain 286706 chrX 156040895 + 20875303 20879305 L1PA10 4194 + 175 4150 7239 12 2 0 14 67 54 14 55 45 21 13 11 7 1 0 10 5 4 7 1 0 6 1 0 15 7 0 10 1 0 66 1 0 4 17 6 8 0 9 13 0 1 162 0 1 192 0 1 216 3 19 50 1 0 237 0 3 143 1 0 56 0 7 17 1 0 177 0 1 4 7 6 10 1 0 4 0 1 386 0 3 402 0 2 51 1 0 16 0 4 13 0 3 118 0 1 138 23 0 268 0 1 210 0 1 168 3 1 95 1 0 4 1 2 90 0 4 282 1 0 19 7 6 10 2 0 33 chain 27630 chrX 156040895 + 20953627 20953945 AluYk4 311 + 0 311 45419 45 7 0 266 chain 29510 chrX 156040895 + 20963997 20964606 L1MA3 4352 + 3713 4328 42593 152 15 19 147 5 9 53 142 150 17 1 0 22 2 1 5 1 0 24 9 2 14 chain 63309 chrX 156040895 + 20971479 20972236 LTR17 781 + 0 781 25562 327 1 0 285 0 1 64 0 1 50 0 22 23 0 1 7 chain 32321 chrX 156040895 + 20995193 20995643 MER4A1 472 + 0 472 40102 14 0 2 25 0 6 5 1 2 85 1 0 41 13 25 195 3 5 67 chain 143799 chrX 156040895 + 20997983 20999991 MER4-int 2692 + 74 2099 12785 25 2 0 4 2 0 22 3 1 215 2 1 207 1 10 205 0 4 125 0 1 5 1 0 100 0 2 101 1 0 47 9 8 19 1 0 19 1 2 96 12 0 96 2 18 23 5 4 31 2 3 71 7 11 22 0 1 179 1 3 129 6 5 115 0 1 94 chain 26222 chrX 156040895 + 21000661 21001020 MER4A1 472 + 81 472 47388 25 1 0 33 1 0 35 0 33 188 9 11 60 1 0 6 chain 17546 chrX 156040895 + 21021225 21021631 L1M1 2793 + 661 1026 59183 20 69 59 5 2 0 20 32 11 26 1 0 29 2 0 8 5 4 52 3 1 5 1 0 22 0 1 4 1 0 75 1 0 23 chain 2436 chrX 156040895 + 21041421 21041524 L2a 937 + 189 292 104012 16 52 57 7 5 0 23 chain 17611 chrX 156040895 + 21061256 21061570 L1PA17 2846 + 2380 2683 59110 82 10 14 20 37 25 5 0 1 6 1 0 28 3 0 5 0 3 31 1 0 32 1 0 18 1 0 33 chain 57083 chrX 156040895 + 21065102 21066027 L1PB1 5432 + 4512 5427 27243 109 3 0 127 7 11 74 6 28 131 0 1 110 1 2 9 1 0 24 1 0 9 1 0 9 7 3 7 0 4 50 3 2 14 1 0 44 1 0 11 60 49 6 2 0 24 1 0 17 15 4 13 1 0 12 2 0 7 1 0 4 chain 540935 chrX 156040895 + 21089182 21095462 L1PA4 6152 + 6 6151 1285 525 4 0 49 1 0 592 1 2 155 16 5 1491 108 0 857 1 0 1194 9 5 423 0 4 256 15 4 583 chain 7113 chrX 156040895 + 21129988 21130063 L1PA2 6032 + 5771 5846 77213 75 chain 115444 chrX 156040895 + 21133587 21134996 L1PA8A 6298 + 4882 6292 16321 265 1 0 6 1 0 54 6 7 272 1 0 81 6 8 165 0 1 551 chain 92756 chrX 156040895 + 21139560 21140734 L1PA7 6471 + 3548 4707 19225 112 45 29 553 0 1 464 chain 34291 chrX 156040895 + 21156976 21157402 LTR17 781 + 0 423 38499 56 1 0 100 1 0 171 1 0 96 chain 29723 chrX 156040895 + 21200460 21200860 MLT2A1 477 + 0 395 42342 162 14 11 28 0 3 6 4 2 129 1 2 42 4 0 10 chain 19513 chrX 156040895 + 21207319 21207663 L1PA15 4387 + 4033 4366 57005 71 1 0 23 4 3 54 2 1 16 4 0 15 2 1 21 5 6 4 1 0 19 5 2 45 3 1 13 0 3 25 1 0 10 chain 217140 chrX 156040895 + 21214743 21217567 L1PA8 5853 + 3058 5853 9116 152 23 4 175 14 12 203 0 1 265 0 1 32 8 7 197 3 0 296 8 9 597 2 0 555 1 0 44 2 0 132 2 1 19 2 1 92 chain 43000 chrX 156040895 + 21222751 21223250 L1PA4 6152 + 5642 6143 32770 61 4 6 434 chain 83352 chrX 156040895 + 21230875 21231838 L1PA5 6144 + 2731 3711 20955 97 0 4 166 0 10 249 0 3 451 chain 8842 chrX 156040895 + 21240848 21240980 L1MA2 4263 + 3989 4113 72888 69 7 0 47 1 0 8 chain 63915 chrX 156040895 + 21264291 21264987 L1PA3long 6157 + 4388 5084 25428 696 chain 127399 chrX 156040895 + 21282185 21283915 L1PA11 4918 + 2700 4502 14374 76 0 3 144 13 17 101 0 1 416 16 51 151 1 0 197 0 1 14 16 52 8 0 1 17 0 1 113 5 6 194 0 1 66 11 6 56 2 1 12 3 1 58 11 9 14 1 0 14 chain 34972 chrX 156040895 + 21312291 21312788 MLT2A2 560 + 0 560 38033 169 46 47 92 6 38 41 0 30 143 chain 4918 chrX 156040895 + 21326671 21326733 L1M1 2793 + 2213 2275 86064 62 chain 80232 chrX 156040895 + 21334284 21335325 MER11C 1089 + 0 1074 21581 225 0 5 34 0 3 52 1 18 221 40 41 176 0 8 199 1 0 15 0 1 54 9 8 14 chain 557034 chrX 156040895 + 21339465 21345718 L1PA3long 6157 + 0 6157 296 633 104 0 1686 0 1 845 0 1 1478 0 5 1358 1 2 148 chain 333832 chrX 156040895 + 21349593 21354210 L1PA11 4918 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217 chain 2402 chrX 156040895 + 21649786 21649815 L1PA7 6471 + 5669 5698 104147 29 chain 67811 chrX 156040895 + 21649815 21650585 L1PA7 6471 + 5700 6470 24492 585 1 0 160 0 1 24 chain 81488 chrX 156040895 + 21686412 21687411 LTR13A 966 + 0 966 21335 125 0 1 11 12 0 6 21 0 241 1 0 582 chain 27000 chrX 156040895 + 21717100 21717441 THE1C 375 + 0 350 46274 134 0 4 74 2 3 87 0 4 44 chain 297187 chrX 156040895 + 21772195 21776462 L1PB1 5432 + 1381 5413 6916 14 1 0 7 9 16 98 9 5 293 45 8 260 1 3 168 8 7 29 0 7 204 4 2 82 5 4 186 0 8 155 7 17 246 5 6 267 26 6 123 2 0 124 1 4 388 0 1 338 42 41 128 3 0 455 16 8 14 1 2 9 167 0 24 1 0 9 16 11 11 3 1 50 2 1 16 1 0 43 1 0 12 75 61 17 1 0 21 1 0 13 1 0 9 chain 22246 chrX 156040895 + 21835240 21835548 MER4A 717 + 0 322 53483 122 7 0 44 0 23 73 3 1 59 chain 7274 chrX 156040895 + 21990041 21990151 LTR45C 530 + 350 459 76753 30 11 10 69 chain 20601 chrX 156040895 + 22009444 22009711 L1MA4 2864 + 1268 1537 55630 236 3 5 28 chain 16991 chrX 156040895 + 22082777 22083200 L1PREC2 3366 + 2642 3046 59811 74 2 1 35 2 0 47 6 5 16 93 86 15 10 8 18 28 24 32 11 9 34 chain 48496 chrX 156040895 + 22116681 22117340 PABL_A 660 + 0 660 30120 45 23 23 59 1 0 151 0 1 130 0 1 151 9 8 8 0 1 82 chain 498427 chrX 156040895 + 22238142 22244439 L1PA7 6471 + 5 6465 3186 191 16 15 107 21 191 240 0 15 17 1 5 114 4 27 154 1 0 48 11 9 69 1 0 7 0 2 15 4 0 214 4 0 542 0 1 360 1 4 286 25 8 66 4 0 170 15 3 9 0 3 10 2 0 78 5 0 559 0 4 288 8 4 637 0 4 58 4 0 266 2 1 150 1 0 347 1 0 311 0 3 91 1 2 34 4 0 258 1 0 303 9 0 8 0 8 144 chain 23886 chrX 156040895 + 22260384 22260670 L1PA7 6471 + 5982 6269 50965 154 0 1 132 chain 16046 chrX 156040895 + 22260680 22260874 L1PA7 6471 + 6273 6468 60963 40 0 1 154 chain 18726 chrX 156040895 + 22266716 22266973 MER47A 366 + 97 366 57871 38 5 12 96 1 6 117 chain 10210 chrX 156040895 + 22287314 22287437 MER83B 357 + 194 317 69993 123 chain 102298 chrX 156040895 + 22288833 22290231 THE1C-int 1605 + 53 1557 18034 61 1 55 276 3 10 216 39 38 43 6 0 69 1 9 33 0 3 284 8 50 293 1 0 51 1 0 4 0 1 8 chain 3970 chrX 156040895 + 22348794 22348874 MER96 175 - 46 127 91631 35 22 23 23 chain 22244 chrX 156040895 + 22356741 22357103 THE1B 368 + 0 368 53486 125 4 1 36 5 0 10 2 1 25 46 61 109 chain 17064 chrX 156040895 + 22374378 22374581 L1PA7 6471 + 6265 6468 59738 203 chain 90012 chrX 156040895 + 22393635 22395272 L1PB1 5432 + 4108 5413 19679 407 302 0 8 0 4 100 1 2 85 1 0 90 32 31 268 3 0 10 9 8 15 1 0 6 3 2 12 18 12 52 3 1 14 0 1 34 0 1 10 44 31 14 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 9 chain 200721 chrX 156040895 + 22432833 22435498 L1PBa1 4058 + 10 2750 9700 26 1 0 11 24 2 6 1 0 157 2 3 11 1 10 192 2 0 138 1 0 50 70 68 396 1 0 4 3 4 326 6 100 6 6 0 90 0 1 47 1 0 9 2 1 71 0 1 60 0 6 635 1 7 8 11 0 146 0 4 9 0 1 134 chain 279302 chrX 156040895 + 22439795 22444094 L1PB1 5432 + 1701 5402 7440 690 22 12 97 2 0 314 584 6 14 2 0 8 2 1 170 0 1 94 0 23 41 0 1 468 0 1 93 0 1 315 0 1 46 15 10 200 3 4 122 0 1 192 8 5 164 0 2 6 14 11 288 1 0 8 5 4 23 1 0 6 19 14 11 3 1 50 2 1 16 1 0 21 3 0 23 1 0 14 4 1 31 24 19 24 1 0 22 1 0 10 chain 42146 chrX 156040895 + 22440925 22441406 L1PA4 6152 + 5674 6152 33280 4 0 1 467 4 0 6 chain 23881 chrX 156040895 + 22446262 22446521 L1PA3long 6157 + 5885 6144 50977 259 chain 46864 chrX 156040895 + 22489068 22489613 L1PA7 6471 + 5760 6307 30711 282 0 2 263 chain 13737 chrX 156040895 + 22489620 22489771 L1PA7 6471 + 6314 6465 63962 151 chain 27361 chrX 156040895 + 22514305 22514657 L1PA8 5853 + 5508 5853 45747 56 1 0 45 3 1 69 1 0 14 1 0 47 2 1 22 1 0 90 chain 129042 chrX 156040895 + 22527961 22529936 L1PREC2 3366 + 1112 3041 14142 166 46 40 18 4 3 303 0 3 40 1 0 85 1 0 122 0 1 421 0 1 4 8 6 308 11 12 71 0 1 35 2 0 27 29 28 41 54 40 12 2 0 6 21 15 4 0 1 25 46 30 25 6 4 31 chain 78388 chrX 156040895 + 22530692 22531583 L1PA7 6471 + 5572 6467 22007 882 0 4 9 chain 13357 chrX 156040895 + 22547897 22548098 LTR38 553 + 167 411 64528 85 5 26 13 4 0 28 1 27 65 chain 49569 chrX 156040895 + 22564172 22564750 L1PA7 6471 + 5890 6469 29744 246 0 1 332 chain 7810 chrX 156040895 + 22580923 22581014 L1PA7 6471 + 5679 5770 75344 91 chain 41845 chrX 156040895 + 22581017 22581512 L1PA7 6471 + 5772 6269 33461 300 3 5 192 chain 14111 chrX 156040895 + 22581513 22581701 L1PA7 6471 + 6278 6463 63435 179 3 0 6 chain 132987 chrX 156040895 + 22606559 22608301 L1PA8 5853 + 4137 5853 13739 195 2 0 7 1 0 4 0 3 512 0 5 146 2 0 84 0 1 277 18 0 23 2 0 170 1 0 43 2 0 57 16 15 23 5 0 38 2 1 19 1 0 16 0 1 76 chain 477559 chrX 156040895 + 22609192 22614681 L1PA4 6152 + 7 5503 3688 29 1 3 15 0 1 152 8 8 262 0 9 42 4 0 321 1 4 137 0 1 644 2 1 565 0 2 962 0 1 17 1 0 75 0 5 1781 12 1 458 chain 26356 chrX 156040895 + 22619489 22619886 L1PA17 2846 + 2305 2693 47189 194 27 18 16 2 1 98 1 0 18 1 0 27 0 3 13 chain 187702 chrX 156040895 + 22658667 22660747 L1P1 4361 + 2126 4206 10226 716 0 1 1307 1 0 56 chain 528786 chrX 156040895 + 22676858 22683300 L1PA5 6144 + 0 6137 1887 135 23 49 294 2 1 65 2 1 351 1 0 273 9 0 708 0 9 109 0 1 1126 0 4 2635 333 0 376 chain 23425 chrX 156040895 + 22769031 22769317 L1PA7 6471 + 6179 6458 51714 39 7 0 240 chain 17915 chrX 156040895 + 22771183 22771399 L1PB 1623 + 411 627 58739 74 1 0 104 0 1 37 chain 9606 chrX 156040895 + 22782442 22782622 L1MA8 2339 + 1996 2150 71251 13 1 0 86 45 21 8 1 0 26 chain 322384 chrX 156040895 + 22790732 22794577 L1PA7 6471 + 1961 5813 6364 678 1 2 380 8 8 1096 0 4 365 8 0 6 0 8 1114 0 2 189 chain 536158 chrX 156040895 + 22866381 22872850 L1PA7 6471 + 0 6468 1556 117 1 0 294 0 1 589 0 1 249 0 19 864 0 2 21 0 3 479 31 3 245 8 12 197 0 4 403 1 0 494 6 0 13 0 5 472 0 1 44 0 1 344 1 18 128 0 1 359 25 1 237 1 0 672 23 23 7 0 1 144 chain 31543 chrX 156040895 + 22873148 22873519 L1PA8A 6298 + 5916 6289 40708 269 0 1 15 0 1 87 chain 25906 chrX 156040895 + 22969945 22970350 THE1B 368 + 0 368 47854 44 0 15 109 2 0 108 75 25 67 chain 18365 chrX 156040895 + 22971687 22971980 L1MA2 4263 + 3812 4095 58283 104 6 5 31 15 13 93 15 8 29 chain 38785 chrX 156040895 + 22976026 22976585 L1PA15 4387 + 3635 4185 35508 162 18 16 20 5 1 6 0 1 49 2 0 42 1 0 26 4 0 146 1 0 18 13 17 46 chain 3662 chrX 156040895 + 23024977 23025017 MLT2D 439 + 397 437 93897 40 chain 62114 chrX 156040895 + 23069118 23070576 L1PA15 4387 + 373 1249 25841 72 2 1 168 6 9 5 3 0 66 7 6 53 586 6 88 0 2 7 2 0 393 chain 35759 chrX 156040895 + 23104380 23104786 L1PA7 6471 + 6063 6470 37563 250 0 1 156 chain 60501 chrX 156040895 + 23128000 23129452 MER4E1 777 + 0 770 26233 199 685 0 265 1 2 69 0 1 11 3 4 219 chain 30546 chrX 156040895 + 23157011 23157795 LTR7B 505 + 0 505 41527 59 0 1 33 1 0 15 0 10 56 367 78 26 0 2 85 1 0 76 11 10 54 chain 75398 chrX 156040895 + 23213781 23214747 L1PA8 5853 + 4901 5853 22745 109 2 0 76 1 0 301 4 2 14 0 3 158 10 9 36 2 0 69 6 5 5 1 0 52 2 1 19 5 4 20 5 0 69 chain 3440 chrX 156040895 + 23229162 23229201 MLT1H2 457 + 102 141 95735 39 chain 15643 chrX 156040895 + 23234263 23234450 MER4A1 472 + 275 462 61479 187 chain 11090 chrX 156040895 + 23238333 23238516 MER4-int 2692 + 1 183 68428 10 1 0 25 2 0 63 1 0 4 1 2 13 9 11 54 chain 562915 chrX 156040895 + 23238516 23244546 L1HS 6032 + 0 6032 129 213 0 1 631 0 1 5186 chain 185631 chrX 156040895 + 23244575 23247368 MER4-int 2692 + 168 2665 10317 33 15 13 196 4 3 97 2 1 203 4 5 55 4 0 66 1 0 310 3 0 167 1 0 9 2 0 90 2 1 65 35 31 70 3 0 55 0 5 52 4 28 34 7 6 127 0 2 127 1 0 97 0 2 19 0 1 124 0 13 9 18 0 4 1 0 112 300 0 265 chain 347739 chrX 156040895 + 23256559 23261532 L1PA11 4918 + 3 4629 5937 39 2 0 36 4 1 36 0 2 11 2 0 52 1 0 32 2 0 6 2 1 71 0 9 35 0 1 10 5 10 56 0 1 71 0 4 306 10 11 164 0 2 559 355 12 88 0 2 182 4 1 389 9 5 44 1 0 4 0 1 277 1 2 234 0 2 424 0 1 279 7 10 180 6 7 17 0 1 514 0 13 95 0 4 11 5 0 65 2 1 12 1 0 68 2 0 14 1 0 10 57 45 11 6 5 8 2 0 11 47 33 18 chain 6007 chrX 156040895 + 23313214 23313283 Charlie1b 519 + 179 248 81051 69 chain 6680 chrX 156040895 + 23432050 23432144 L1PA17 2846 + 2600 2692 78705 32 1 0 17 1 0 43 chain 30352 chrX 156040895 + 23441806 23442369 L1PB1 5432 + 4898 5427 41711 205 5 3 8 1 0 15 6 5 13 1 0 11 15 9 52 1 0 62 1 0 15 71 53 21 1 0 14 0 2 5 1 0 13 7 6 12 2 0 5 chain 19575 chrX 156040895 + 23442386 23442704 L1MA3 4352 + 1266 1587 56928 17 8 12 13 0 1 4 12 11 19 4 0 20 4 8 158 1 0 58 chain 4527 chrX 156040895 + 23447716 23447767 5S 121 + 0 51 88175 51 chain 5743 chrX 156040895 + 23466866 23466934 MER2B 336 + 6 74 82161 68 chain 8814 chrX 156040895 + 23484336 23484437 L1P3 4156 + 0 101 72965 101 chain 121306 chrX 156040895 + 23484715 23486157 L1PA7 6471 + 5026 6469 15297 52 0 1 540 5 6 698 0 1 135 2 0 10 chain 31285 chrX 156040895 + 23506592 23507008 MER61B 427 + 6 427 40907 148 5 6 32 1 2 4 1 0 77 0 4 148 chain 12710 chrX 156040895 + 23510375 23510564 MSTA 426 + 231 426 65602 5 2 0 64 23 31 95 chain 38878 chrX 156040895 + 23522017 23522456 L1PA4 6152 + 3835 4274 35449 439 chain 96812 chrX 156040895 + 23522825 23524122 SVA_A 1864 + 493 1864 18676 23 1 80 20 16 14 33 4 7 95 0 2 36 2 0 50 1 4 31 1 0 9 0 37 125 5 3 72 41 0 10 1 0 24 3 0 74 6 4 599 0 4 15 chain 17854 chrX 156040895 + 23533694 23533896 L1PA3long 6157 + 5940 6142 58823 202 chain 29163 chrX 156040895 + 23542742 23543185 L1M1 2793 + 2245 2685 43105 26 0 2 6 9 13 16 1 0 16 0 1 43 0 3 48 25 15 100 1 0 94 1 0 57 chain 42326 chrX 156040895 + 23546756 23547462 L1MA3 4352 + 3684 4346 33172 51 2 0 172 0 1 180 81 48 44 6 5 73 2 0 24 2 1 5 1 0 13 16 15 5 2 0 9 2 0 16 chain 196303 chrX 156040895 + 23571904 23574662 L1PB1 5432 + 2726 5410 9837 294 0 1 419 0 2 156 1 0 46 0 8 69 61 17 224 2 1 246 7 3 147 10 5 11 0 10 247 5 1 267 2 1 103 24 26 31 12 16 6 4 0 20 1 2 9 5 0 24 1 0 6 1 0 14 5 1 9 7 5 45 24 22 4 1 0 35 2 1 16 5 0 11 9 1 18 34 29 15 1 0 22 1 0 12 1 0 6 chain 34984 chrX 156040895 + 23592225 23592617 THE1B-int 1605 + 40 432 38025 392 chain 25884 chrX 156040895 + 23605007 23605362 THE1A 353 + 0 353 47889 84 5 6 19 2 1 88 1 0 94 1 3 6 3 0 52 chain 13432 chrX 156040895 + 23623375 23623555 LTR39 781 + 48 227 64410 29 1 0 116 0 1 9 1 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24129122 L1MA8 2339 + 2009 2080 80444 71 chain 45807 chrX 156040895 + 24141053 24141865 LOR1-int 1871 + 422 1270 31162 158 19 22 30 6 0 63 2 3 23 99 147 21 3 1 5 1 0 106 3 0 36 0 1 48 1 0 3 1 0 7 1 0 4 10 7 23 1 0 90 1 3 47 chain 13472 chrX 156040895 + 24183506 24183723 Tigger4b 360 + 0 221 64353 106 28 33 24 2 1 57 chain 2874 chrX 156040895 + 24222805 24222884 MER101 471 + 187 266 101050 20 33 33 26 chain 3579 chrX 156040895 + 24295209 24295253 MER57B1 401 + 357 401 94598 44 chain 16414 chrX 156040895 + 24309516 24309690 L1HS 6032 + 5858 6032 60497 174 chain 264731 chrX 156040895 + 24336529 24339437 L1PA4 6152 + 3232 6151 7834 898 0 7 1162 1 5 847 chain 9685 chrX 156040895 + 24389993 24390116 MER3 215 + 86 215 71087 66 0 6 57 chain 3038 chrX 156040895 + 24426458 24426490 LTR67B 553 + 70 102 99441 32 chain 3294 chrX 156040895 + 24429945 24429992 MSTA 426 + 355 414 97064 18 1 13 28 chain 15948 chrX 156040895 + 24433542 24433752 L1PA8 5853 + 5647 5853 61094 35 1 0 6 1 0 52 2 1 19 1 0 93 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chrX 156040895 + 25449422 25449765 THE1C-int 1605 + 2 406 45868 12 3 4 98 0 54 157 0 6 73 chain 55009 chrX 156040895 + 25450082 25450725 L1PA7 6471 + 5822 6467 27872 244 0 2 149 2 1 28 0 1 220 chain 34457 chrX 156040895 + 25459225 25459656 MLT2A1 477 + 0 477 38394 142 0 1 26 0 4 151 1 0 61 3 45 47 chain 6513 chrX 156040895 + 25464298 25464385 MLT1B 390 + 282 368 79295 13 1 0 73 chain 21903 chrX 156040895 + 25497149 25497504 THE1B 368 + 0 368 53962 48 18 22 99 1 0 29 1 4 8 0 4 18 1 0 10 2 1 63 22 27 35 chain 58740 chrX 156040895 + 25502123 25502780 L1PA5 6144 + 5484 6141 26752 657 chain 92964 chrX 156040895 + 25532683 25533942 HSMAR1 1287 + 1 1287 19183 29 12 15 26 0 4 70 0 3 6 0 5 116 0 3 88 25 18 52 0 6 122 1 5 14 0 3 35 0 1 122 3 0 20 1 4 244 0 1 229 0 1 44 chain 33483 chrX 156040895 + 25734946 25735316 L1PA4 6152 + 5781 6152 39100 36 0 1 334 chain 315744 chrX 156040895 + 25772423 25775960 L1PA4 6152 + 2610 6152 6487 560 0 1 1285 0 3 509 1 0 809 0 1 229 1 2 143 chain 28856 chrX 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26484570 THE1B 368 + 0 353 56942 14 2 0 33 17 23 99 1 0 11 0 1 7 7 12 10 0 4 16 1 0 12 8 7 50 0 4 8 13 8 34 chain 121944 chrX 156040895 + 26491159 26492515 L1PA3long 6157 + 3416 4776 15197 530 0 1 174 0 1 146 0 3 343 1 0 162 chain 28080 chrX 156040895 + 26497304 26497786 LTR12 884 + 0 677 44747 60 6 113 8 1 0 24 17 6 36 1 0 66 1 0 23 1 2 39 2 0 12 28 28 127 3 106 27 chain 49720 chrX 156040895 + 26528610 26529325 L1PA13 3608 + 2779 3482 29677 189 3 4 14 0 1 84 0 3 52 6 0 16 1 5 13 1 0 114 2 0 61 1 0 27 1 0 7 0 1 21 11 5 47 9 5 18 1 0 16 chain 65998 chrX 156040895 + 26641376 26642296 L1PREC2 3366 + 1285 2202 24963 25 5 8 58 2 3 212 17 0 93 1 0 85 0 2 42 0 1 39 4 5 132 9 16 196 chain 31764 chrX 156040895 + 26679522 26679968 MLT2A1 477 + 0 477 40527 169 4 1 11 0 1 17 1 0 4 0 2 180 10 0 10 3 45 37 chain 17837 chrX 156040895 + 26752121 26752330 AluYk4 311 + 88 297 58841 209 chain 52833 chrX 156040895 + 26756827 26757418 LTR10C 591 + 0 591 28633 34 2 0 476 0 2 79 chain 29765 chrX 156040895 + 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27225590 27227514 L1PA3long 6157 + 3270 5194 10822 1924 chain 121252 chrX 156040895 + 27239584 27241149 THE1B-int 1605 + 0 1594 15308 25 3 0 5 1 4 398 13 38 9 1 2 653 6 10 200 1 0 250 chain 201649 chrX 156040895 + 27263292 27265522 L1PA4 6152 + 3913 6136 9655 916 7 0 1307 chain 529492 chrX 156040895 + 27299222 27305683 L1PA7 6471 + 0 6469 1852 392 1 2 18 1 0 470 15 0 50 0 7 90 0 14 388 2 1 99 0 1 427 1 0 36 4 0 711 0 4 123 0 2 668 1 0 73 0 3 105 4 3 39 3 11 85 17 7 648 0 4 36 0 1 248 0 3 180 1 0 129 7 17 7 6 0 103 1 2 409 1 4 674 20 7 168 chain 49879 chrX 156040895 + 27375612 27376182 LTR10C 591 + 0 591 29610 37 0 19 452 0 2 81 chain 27400 chrX 156040895 + 27450545 27450914 THE1C 375 + 0 375 45705 118 0 1 23 7 11 32 9 10 180 chain 132245 chrX 156040895 + 27457869 27459560 SVA_A 1864 + 19 1864 13803 74 0 11 454 0 1 93 40 0 39 41 1 36 0 39 118 1 0 23 3 0 107 3 0 41 3 37 17 7 80 56 4 75 24 0 16 486 7 3 14 chain 2532 chrX 156040895 + 27458492 27458530 SVA_A 1864 + 764 802 40878 38 chain 3214 chrX 156040895 + 27458569 27458610 SVA_A 1864 + 988 1173 56013 27 10 154 4 chain 42288 chrX 156040895 + 27577574 27578133 L1PA10 4194 + 3609 4163 33201 64 0 1 139 0 1 269 3 0 33 3 0 34 1 0 13 chain 3794 chrX 156040895 + 27586428 27586478 MADE1 96 + 45 96 92894 18 0 1 32 chain 37828 chrX 156040895 + 27598267 27598785 HERV1_LTRb 511 + 0 500 36185 14 0 1 70 28 13 248 4 0 109 1 0 5 1 2 38 chain 12040 chrX 156040895 + 27640097 27640229 L1PA5 6144 + 5813 5945 66780 132 chain 83961 chrX 156040895 + 27645055 27646141 L1PA10 4194 + 3070 4160 20815 317 0 2 88 0 3 145 2 0 63 4 6 135 0 1 252 7 9 26 3 0 33 1 0 10 chain 26366 chrX 156040895 + 27656864 27657239 MLT2A1 477 + 0 470 47169 160 22 20 24 0 1 4 0 71 105 21 46 39 chain 43813 chrX 156040895 + 27693632 27694198 L1PA16 3655 + 3013 3578 32241 187 2 1 377 chain 537406 chrX 156040895 + 27758585 27764732 L1PA5 6144 + 4 6132 1488 543 0 1 175 8 9 86 1 18 163 1 0 380 0 1 230 1 0 698 8 0 2280 0 1 770 2 0 63 29 0 703 0 1 6 chain 31010 chrX 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28687825 28688123 AluSz6 309 + 6 302 52670 144 11 9 143 chain 25353 chrX 156040895 + 28689178 28689545 THE1C 375 + 0 375 48701 30 1 0 17 0 6 10 9 19 7 9 0 53 0 4 38 2 1 165 1 0 25 chain 115172 chrX 156040895 + 28714914 28716391 L1PA13 3608 + 1236 2931 16359 259 0 1 328 10 226 363 6 5 29 0 1 106 5 1 258 8 13 105 chain 25407 chrX 156040895 + 28727789 28728082 L1PA2 6032 + 5738 6031 48613 128 5 0 7 0 5 153 chain 40538 chrX 156040895 + 28764844 28765309 L1PA5 6144 + 5675 6140 34280 465 chain 14639 chrX 156040895 + 28771812 28771966 AluYb8 318 + 163 317 62749 154 chain 5758 chrX 156040895 + 28777812 28777882 MER20 218 + 89 159 82093 70 chain 29336 chrX 156040895 + 28847957 28848329 L1PA8 5853 + 5486 5853 42828 34 0 1 41 1 0 46 2 0 74 1 0 58 2 1 19 2 1 92 chain 2893 chrX 156040895 + 28860050 28860081 Tigger1 2417 + 2056 2087 100911 31 chain 13296 chrX 156040895 + 28866193 28866524 L1PB1 5432 + 5129 5427 64623 5 1 0 12 1 0 10 2 0 3 2 0 9 2 0 33 0 1 17 1 0 17 1 0 45 1 0 15 85 67 7 1 0 34 2 1 13 3 0 9 chain 12173 chrX 156040895 + 28884047 28884187 L1PA2 6032 + 5891 6029 66522 128 2 0 10 chain 22649 chrX 156040895 + 28925652 28925920 AluSc5 308 + 8 280 52904 20 0 4 248 chain 52619 chrX 156040895 + 28937662 28938534 L1PREC2 3366 + 2207 3043 28696 77 0 1 4 7 8 58 0 4 67 8 11 313 2 0 28 0 1 25 1 0 46 1 0 4 3 0 10 32 24 12 11 6 16 3 0 30 3 0 4 4 0 7 22 8 33 8 6 33 chain 44087 chrX 156040895 + 28945121 28945765 L1PA8 5853 + 5214 5853 32091 142 7 8 200 1 0 41 5 3 44 0 1 26 1 0 5 28 27 25 6 5 15 8 7 90 chain 19692 chrX 156040895 + 28947465 28947718 L1PA5 6144 + 5896 6139 56795 147 12 4 79 2 0 13 chain 56933 chrX 156040895 + 28950653 28951271 L1PA3long 6157 + 5528 6146 27291 618 chain 12872 chrX 156040895 + 28957156 28957296 L1PA2 6032 + 5892 6032 65300 140 chain 54361 chrX 156040895 + 29161708 29162372 L1PA8 5853 + 5195 5853 28099 369 1 0 46 2 0 68 2 1 15 7 6 60 1 0 93 chain 16462 chrX 156040895 + 29239612 29239840 MER30 238 + 0 238 60431 113 4 17 69 4 1 38 chain 36323 chrX 156040895 + 29251875 29252275 L1PA3long 6157 + 5757 6157 37194 400 chain 36369 chrX 156040895 + 29265857 29266251 L1PA3long 6157 + 5388 5782 37161 394 chain 34462 chrX 156040895 + 29298866 29299312 MLT2A1 477 + 0 477 38387 169 4 1 25 20 12 186 1 43 41 chain 25348 chrX 156040895 + 29385176 29385476 AluSp 311 + 4 305 48713 260 0 1 40 chain 4676 chrX 156040895 + 29442396 29442494 L1PB1 5432 + 5332 5424 87398 14 2 0 24 1 0 17 8 7 10 2 1 15 1 0 4 chain 23279 chrX 156040895 + 29539485 29539897 MSTA 426 + 0 426 51960 133 80 86 9 0 1 25 1 0 46 10 18 108 chain 29350 chrX 156040895 + 29583088 29583415 L1P1 4361 + 4003 4328 42806 148 1 0 154 1 0 23 chain 61018 chrX 156040895 + 29610880 29611648 MER4E 760 + 0 760 26100 23 0 1 344 2 0 54 9 11 36 0 1 22 13 0 243 0 2 16 0 1 6 chain 8122 chrX 156040895 + 29691687 29691772 AluYb8 318 + 225 310 74584 85 chain 28708 chrX 156040895 + 29718245 29718614 L1PA7 6471 + 6100 6470 43784 207 1 7 7 7 0 135 0 2 12 chain 66826 chrX 156040895 + 29720011 29720765 L1PA7 6471 + 5715 6469 24739 37 0 3 698 3 0 16 chain 4095 chrX 156040895 + 29751453 29751499 U2 167 + 0 46 90807 46 chain 11973 chrX 156040895 + 29844602 29844763 MER2 342 + 132 295 66880 112 7 9 42 chain 21898 chrX 156040895 + 29909738 29910116 L1PA15 4387 + 3987 4356 53971 116 0 2 17 4 8 17 0 1 36 7 4 19 4 0 10 1 0 19 0 2 18 17 14 44 3 1 14 5 0 27 chain 21132 chrX 156040895 + 29933080 29933337 L1PA7 6471 + 6205 6468 54969 11 0 1 231 0 5 15 chain 25176 chrX 156040895 + 29975545 29975946 LTR7 482 + 0 482 48995 69 6 95 16 51 0 20 1 11 13 8 40 43 0 1 174 chain 286263 chrX 156040895 + 29975948 29979580 HERVH-int 3825 + 0 3825 7250 282 0 2 49 2 1 42 0 2 17 22 21 30 91 323 11 2 0 7 3 8 20 6 4 405 1 0 377 1 6 75 0 3 169 0 3 143 0 4 118 2 0 216 62 0 495 5 1 240 3 6 28 1 6 164 0 1 12 1 6 111 13 14 13 7 4 386 chain 28602 chrX 156040895 + 29980839 29981240 LTR7 482 + 2 475 43948 67 8 46 43 7 8 58 11 12 31 0 31 7 0 1 169 chain 259657 chrX 156040895 + 30012178 30015058 L1PA4 6152 + 3259 6152 7981 47 0 3 205 1 2 424 0 1 48 0 5 357 0 4 1792 1 0 5 chain 26658 chrX 156040895 + 30025310 30025674 THE1B 368 + 1 368 46746 103 1 0 65 1 0 29 9 16 18 1 0 10 1 0 126 chain 4674 chrX 156040895 + 30060883 30060959 MER20 218 + 63 144 87412 20 12 17 44 chain 29572 chrX 156040895 + 30103612 30104012 LTR7 482 + 0 482 42516 69 8 46 92 15 57 43 0 2 173 chain 299635 chrX 156040895 + 30104014 30107591 HERVH-int 3825 + 0 3825 6844 333 2 1 65 24 23 24 91 323 9 2 0 9 3 8 698 0 9 1570 5 8 328 13 14 126 0 2 275 chain 25974 chrX 156040895 + 30108843 30109253 LTR7 482 + 0 482 47756 68 30 18 15 15 14 18 1 52 39 8 40 43 0 2 173 chain 66623 chrX 156040895 + 30128681 30129697 L1PB1 5432 + 4429 5413 24791 200 0 1 9 0 1 74 2 0 91 1 2 6 1 0 71 4 5 214 7 6 5 1 0 26 1 0 7 30 23 50 2 1 16 1 0 44 1 0 15 1 0 4 62 46 24 1 0 21 1 0 13 1 0 9 chain 21587 chrX 156040895 + 30168893 30169131 L1PA5 6144 + 5902 6140 54379 238 chain 59513 chrX 156040895 + 30202171 30202940 MER4E 760 + 0 760 26503 24 2 0 127 44 47 28 3 0 134 0 2 84 1 0 83 2 0 6 6 0 225 chain 34201 chrX 156040895 + 30210226 30210714 MER4A 717 + 0 476 38563 54 0 5 69 2 1 210 10 0 45 1 0 11 1 0 59 9 5 17 chain 16467 chrX 156040895 + 30211331 30211581 L1PA8 5853 + 5608 5853 60418 71 1 0 21 0 1 39 2 1 19 1 0 56 26 23 14 chain 20011 chrX 156040895 + 30273180 30273468 THE1B 368 + 0 299 56374 102 1 8 59 1 0 29 0 3 5 4 8 18 1 0 5 7 6 56 chain 120251 chrX 156040895 + 30294191 30295773 THE1B-int 1605 + 0 1605 15493 113 1 4 189 1 2 124 0 25 240 7 1 26 69 68 449 0 1 363 chain 3385 chrX 156040895 + 30299869 30299912 Charlie4a 502 + 115 158 96230 43 chain 68864 chrX 156040895 + 30325881 30326739 L1PA3long 6157 + 5308 6157 24244 45 6 0 794 3 0 10 chain 25906 chrX 156040895 + 30378622 30378977 THE1C 375 + 0 350 47856 179 0 2 5 22 12 6 0 3 143 chain 2915 chrX 156040895 + 30379170 30379203 THE1C-int 1605 + 123 156 100720 33 chain 27168 chrX 156040895 + 30380587 30380965 THE1C 375 + 0 375 46015 144 0 1 34 0 3 12 25 19 137 1 0 25 chain 6992 chrX 156040895 + 30422610 30422706 L1MA8 2339 + 1396 1493 77631 36 0 2 34 1 0 25 chain 128587 chrX 156040895 + 30429224 30430739 L1P1 4361 + 4 1519 14207 1515 chain 3353 chrX 156040895 + 30480068 30480105 LTR16A2 485 + 419 456 96570 37 chain 56370 chrX 156040895 + 30536344 30537080 L1PA15 4387 + 2256 3017 27464 156 1 7 443 0 18 20 7 8 109 chain 10112 chrX 156040895 + 30541570 30541699 HSMAR1 1287 + 0 130 70175 76 0 1 53 chain 45867 chrX 156040895 + 30546038 30546564 L1P1 4361 + 3818 4341 31122 333 1 0 154 1 0 23 2 1 12 chain 15406 chrX 156040895 + 30551445 30551665 MER30 238 + 0 238 61782 107 13 34 58 5 2 37 chain 165682 chrX 156040895 + 30601529 30603899 SVA_F 1814 + 9 1813 11359 177 1 2 706 578 0 43 1 0 10 0 15 39 1 0 10 1 0 159 1 0 643 chain 23051 chrX 156040895 + 30602418 30602991 SVA_F 1814 + 898 1134 40997 50 349 14 39 1 0 10 1 0 123 chain 25705 chrX 156040895 + 30602471 30602817 SVA_F 1814 + 966 1265 45300 44 0 1 110 0 1 16 2 1 69 48 0 57 chain 23636 chrX 156040895 + 30605464 30605781 AluSp 311 + 13 306 51372 119 2 0 101 16 0 63 3 0 5 3 0 5 chain 30276 chrX 156040895 + 30624059 30624456 L1MA2 4263 + 3395 3788 41786 189 7 3 75 1 0 7 14 15 104 chain 27625 chrX 156040895 + 30873255 30873543 AluYd8 298 + 0 288 45426 288 chain 16342 chrX 156040895 + 30894569 30894931 THE1B 368 + 0 368 60580 15 2 0 32 0 1 34 49 50 45 60 66 108 1 0 4 2 3 10 chain 47492 chrX 156040895 + 30905632 30906417 MER4D1 891 + 0 818 30482 26 29 32 54 14 19 84 0 4 16 0 27 151 0 1 180 6 17 45 98 79 59 0 1 23 chain 3674 chrX 156040895 + 30915549 30915597 MLT1D 503 + 409 457 93784 48 chain 12884 chrX 156040895 + 30924865 30925181 L1MA6 2487 + 2144 2398 65280 83 30 14 35 2 0 15 1 0 4 84 44 40 3 0 19 chain 4183 chrX 156040895 + 30935252 30935372 MER20 218 + 0 148 90243 14 56 84 50 chain 50549 chrX 156040895 + 30939069 30939674 L1PA7 6471 + 5861 6465 29365 159 6 0 60 0 4 229 0 1 151 chain 5922 chrX 156040895 + 30958351 30958539 MLT1A1 405 + 188 357 81390 20 92 67 29 2 8 45 chain 5013 chrX 156040895 + 31021269 31021348 MADE1 96 + 0 96 85591 31 1 17 9 1 2 37 chain 72608 chrX 156040895 + 31184344 31185124 L1PA3long 6157 + 5377 6157 23398 780 chain 8345 chrX 156040895 + 31220921 31221021 MER30 238 + 138 238 74037 100 chain 41547 chrX 156040895 + 31227815 31228269 L1PA2 6032 + 5577 6032 33655 310 0 1 144 chain 108833 chrX 156040895 + 31311779 31313062 L1PA8A 6298 + 5003 6289 17206 481 1 0 553 0 4 248 chain 204386 chrX 156040895 + 31372596 31374830 L1PA3long 6157 + 3918 6156 9560 439 0 4 868 1 0 920 0 1 6 chain 9218 chrX 156040895 + 31375069 31375196 MER85 139 + 1 139 72086 95 9 20 23 chain 31998 chrX 156040895 + 31377721 31378171 LTR7 482 + 0 482 40344 101 15 14 149 14 44 74 0 2 35 13 14 49 chain 297364 chrX 156040895 + 31378173 31381749 HERVH-int 3825 + 0 3825 6910 180 0 2 99 0 2 56 0 2 23 15 16 78 12 72 22 0 1 5 11 160 38 0 1 22 0 1 457 0 11 228 1 2 124 0 5 36 0 3 133 0 1 226 0 4 318 0 1 101 5 6 667 0 1 304 9 10 273 0 2 16 1 0 116 chain 32115 chrX 156040895 + 31382917 31383365 LTR7 482 + 0 477 40259 101 20 14 106 0 1 44 0 31 89 0 2 31 13 14 44 chain 32322 chrX 156040895 + 31400112 31400563 MER4A1 472 + 0 472 40100 220 33 55 51 1 0 146 chain 38945 chrX 156040895 + 31492574 31493036 L1PA7 6471 + 6009 6468 35399 445 3 0 14 chain 366852 chrX 156040895 + 31531726 31535639 L1HS 6032 + 1105 5019 5715 469 0 1 3444 chain 29090 chrX 156040895 + 31559361 31559665 AluYg6 310 + 1 305 43206 304 chain 20696 chrX 156040895 + 31617561 31617945 L1PA15 4387 + 4001 4366 55504 103 37 35 46 1 0 22 4 0 10 1 0 50 11 8 38 26 19 24 1 0 10 chain 267837 chrX 156040895 + 31688139 31691128 L1PA5 6144 + 3152 6144 7766 24 1 0 865 0 1 959 0 1 291 0 1 227 0 1 622 chain 28610 chrX 156040895 + 31715262 31715563 AluYg6 310 + 0 301 43937 301 chain 18640 chrX 156040895 + 31739526 31739775 L1PA8 5853 + 5608 5853 57950 74 1 0 6 2 1 50 1 0 20 2 1 93 chain 63896 chrX 156040895 + 31750557 31751251 L1PA3long 6157 + 4056 4750 25431 694 chain 15142 chrX 156040895 + 31760453 31760644 Tigger3a 397 + 142 333 62110 191 chain 39153 chrX 156040895 + 31822781 31823261 LTR10D 510 + 0 510 35246 70 3 16 14 0 1 33 0 16 112 0 2 67 2 0 179 chain 96048 chrX 156040895 + 31827218 31828926 L1PB2 3958 + 369 1774 18770 84 25 24 44 17 13 42 0 1 198 0 3 26 21 25 175 0 1 4 10 13 5 1 0 76 1 2 175 0 4 256 349 28 20 0 2 95 0 4 80 0 1 4 chain 60834 chrX 156040895 + 31898026 31898692 L1PA3long 6157 + 4403 5069 26150 666 chain 26977 chrX 156040895 + 31900240 31900595 THE1B 368 + 0 368 46300 44 0 15 109 1 0 42 1 0 158 chain 119027 chrX 156040895 + 31907318 31908714 L1PA6 6164 + 4759 6152 15692 131 1 0 107 4 0 46 0 1 272 0 3 522 4 1 180 0 1 129 chain 97377 chrX 156040895 + 31911420 31912666 HSMAR1 1287 + 38 1287 18609 503 21 22 38 1 0 140 0 4 269 2 1 272 chain 39284 chrX 156040895 + 32006776 32007214 L1PA3long 6157 + 5706 6142 35157 118 1 0 191 1 0 127 chain 2805 chrX 156040895 + 32010357 32010478 MER63B 433 + 313 433 101627 18 75 74 28 chain 16616 chrX 156040895 + 32070536 32070930 L1PB1 5432 + 5059 5395 60250 44 31 0 14 0 1 20 1 0 9 16 11 9 2 0 52 3 2 16 1 0 44 82 66 23 1 0 21 1 0 4 chain 7185 chrX 156040895 + 32070974 32071660 L1PA4 6152 + 5480 6143 76991 388 23 0 275 chain 50361 chrX 156040895 + 32099313 32099898 L1PA4 6152 + 5562 6152 29430 579 0 5 6 chain 11041 chrX 156040895 + 32102151 32102286 MSTC 436 + 300 435 68496 135 chain 11796 chrX 156040895 + 32162025 32162179 L1PA8 5853 + 5701 5853 67214 39 2 1 19 1 0 93 chain 36262 chrX 156040895 + 32175166 32175637 LTR12F 595 + 0 595 37234 91 20 13 13 0 130 118 1 2 228 chain 4291 chrX 156040895 + 32222490 32222552 L1PB 1623 + 117 176 89560 52 3 0 7 chain 22924 chrX 156040895 + 32236462 32236797 THE1B 368 + 1 366 52479 43 6 21 104 1 0 11 0 17 102 21 20 47 chain 27546 chrX 156040895 + 32250859 32251204 L1PA7 6471 + 6128 6469 45518 179 1 2 152 5 0 8 chain 137923 chrX 156040895 + 32256950 32258658 L1PA7 6471 + 4594 6305 13273 39 0 1 4 1 0 192 1 0 257 0 6 8 6 0 39 0 2 5 7 5 179 0 7 8 7 0 278 1 4 467 0 1 209 chain 50956 chrX 156040895 + 32288682 32289392 MER41-int 2638 + 1920 2622 29226 113 2 0 35 0 7 276 1 0 87 7 17 129 40 18 20 chain 234374 chrX 156040895 + 32312621 32315524 L1PA7 6471 + 3504 6470 8627 309 0 4 12 15 0 101 13 11 67 1 40 153 3 0 37 8 9 239 1 2 180 0 4 415 13 14 379 0 6 136 1 4 469 0 1 148 0 1 27 5 26 153 0 1 18 chain 9000 chrX 156040895 + 32323001 32323202 MER2 342 + 6 205 72555 21 63 60 28 5 6 84 chain 69753 chrX 156040895 + 32400555 32401336 L1PA3long 6157 + 5371 6152 24051 781 chain 78982 chrX 156040895 + 32405620 32408120 L1PA4 6152 + 3684 6138 21878 1053 49 0 697 0 3 701 chain 4393 chrX 156040895 + 32529533 32529584 MER4A1 472 + 416 467 88925 51 chain 24396 chrX 156040895 + 32538157 32538582 LTR7 482 + 0 474 50175 86 0 50 47 44 0 17 1 11 13 5 37 24 23 24 165 chain 11620 chrX 156040895 + 32626670 32626812 L1PA6 6164 + 6011 6156 67535 48 0 3 94 chain 537545 chrX 156040895 + 32730903 32736921 L1PA3long 6157 + 4 6152 1481 148 0 1 623 0 128 4402 0 1 845 chain 8326 chrX 156040895 + 32783637 32783740 MER2 342 + 143 246 74091 103 chain 27950 chrX 156040895 + 32838661 32839021 L1PA7 6471 + 5689 6056 44946 20 5 8 90 0 4 245 chain 3189 chrX 156040895 + 32842415 32842460 LTR43B 570 + 228 270 97993 5 3 0 37 chain 27741 chrX 156040895 + 32889464 32889890 LTR7B 505 + 0 505 45263 13 0 6 76 0 1 9 0 10 69 35 11 17 0 88 65 1 0 76 14 13 51 chain 3823 chrX 156040895 + 32916837 32916881 L1MA4 2864 + 2766 2810 92689 44 chain 16341 chrX 156040895 + 32916983 32917353 THE1D 372 + 0 372 60581 35 84 83 42 0 1 8 53 55 148 chain 53375 chrX 156040895 + 33015887 33016547 PABL_A 660 + 0 660 28447 660 chain 34879 chrX 156040895 + 33073977 33074410 MER57A1 433 + 0 433 38105 433 chain 33229 chrX 156040895 + 33103274 33104707 LTR7 482 + 0 482 39322 101 15 14 132 991 31 38 0 10 156 chain 13421 chrX 156040895 + 33103522 33103716 LTR7 482 + 278 477 64437 29 0 1 4 4 7 100 13 14 44 chain 4587 chrX 156040895 + 33104305 33104359 LTR7 482 + 0 54 87854 54 chain 10392 chrX 156040895 + 33104382 33104513 LTR7 482 + 115 247 69634 109 0 1 22 chain 3212 chrX 156040895 + 33167913 33167970 MIR 256 + 175 231 97779 35 7 6 15 chain 13182 chrX 156040895 + 33216266 33216451 L1PA16 3655 + 3411 3592 64808 137 1 0 21 11 8 15 chain 6252 chrX 156040895 + 33233279 33233628 L1MD2 1676 + 1173 1518 80168 51 258 254 40 chain 3650 chrX 156040895 + 33259521 33259566 Tigger4a 237 - 189 234 94029 45 chain 10437 chrX 156040895 + 33290941 33291059 L1P3 4156 + 3989 4107 69541 118 chain 130978 chrX 156040895 + 33304159 33305577 L1PA3long 6157 + 4739 6157 13929 1418 chain 20282 chrX 156040895 + 33365173 33365390 L1PA2 6032 + 5811 6028 56036 217 chain 29318 chrX 156040895 + 33405993 33406327 L1P1 4361 + 3418 3752 42851 334 chain 35039 chrX 156040895 + 33406327 33406755 L1PA5 6144 + 5742 6141 37991 246 29 0 153 chain 133347 chrX 156040895 + 33442524 33444004 L1PA4 6152 + 4661 6140 13709 322 1 0 1157 chain 44131 chrX 156040895 + 33498236 33498716 L1PA3long 6157 + 5674 6153 32061 224 1 0 255 chain 250575 chrX 156040895 + 33507808 33510866 L1PA6 6164 + 3205 6154 8218 101 5 4 387 2 0 611 0 1 346 105 0 633 5 6 14 1 0 112 1 0 294 7 6 434 chain 28566 chrX 156040895 + 33515004 33515301 AluYd8 298 + 0 297 44006 297 chain 29247 chrX 156040895 + 33523722 33524060 L1P1 4361 + 4006 4341 42967 145 1 0 154 1 0 23 2 1 12 chain 58228 chrX 156040895 + 33568642 33569536 L1PA11 4918 + 3704 4578 26890 364 0 1 99 0 1 114 27 31 14 5 0 55 12 11 13 2 0 67 17 14 20 4 0 9 34 26 9 3 2 13 2 0 11 chain 10421 chrX 156040895 + 33582027 33582169 L1PA7 6471 + 6330 6470 69572 34 9 1 85 0 6 14 chain 55054 chrX 156040895 + 33635904 33636534 L1PA7 6471 + 4147 4777 27849 630 chain 137085 chrX 156040895 + 33639971 33641494 L1PA5 6144 + 4075 5599 13333 889 0 1 634 chain 78860 chrX 156040895 + 33683067 33683941 L1PA4 6152 + 4641 5517 21906 298 0 2 576 chain 5367 chrX 156040895 + 33875239 33875304 THE1B 368 + 266 333 83862 33 0 2 32 chain 27860 chrX 156040895 + 33884013 33884390 THE1C 375 + 0 375 45093 174 22 21 155 1 0 25 chain 45870 chrX 156040895 + 33902885 33903714 L1PREC2 3366 + 2285 3075 31121 16 1 4 449 2 0 46 7 6 44 46 38 17 28 21 25 4 1 11 67 51 5 1 0 35 2 0 5 1 0 4 1 0 12 chain 49077 chrX 156040895 + 33907803 33908649 MER4D1 891 + 0 883 29917 25 3 0 9 24 25 40 4 22 170 0 6 118 1 0 15 1 0 10 65 83 4 0 1 33 0 9 30 1 6 61 42 27 128 3 2 59 chain 75013 chrX 156040895 + 33925817 33926912 MER11B 1079 + 0 1079 22840 219 1 3 212 5 4 19 18 17 22 24 12 15 0 1 12 4 3 4 0 1 50 0 1 125 1 0 10 21 11 29 6 8 16 0 2 29 0 1 53 0 1 169 2 1 29 chain 7339 chrX 156040895 + 33951468 33951566 L1MA4 2864 + 2549 2647 76548 48 1 0 4 0 1 45 chain 34876 chrX 156040895 + 34017567 34017966 L1PA2 6032 + 5635 6032 38106 61 2 1 177 1 0 158 chain 29082 chrX 156040895 + 34094926 34095358 L1PB3 3668 + 1846 2244 43215 271 54 20 107 chain 37860 chrX 156040895 + 34122186 34122665 MER9a3 513 + 7 513 36167 11 0 26 67 9 10 135 1 0 178 0 1 78 chain 51102 chrX 156040895 + 34160454 34161064 L1PA7 6471 + 5857 6465 29192 279 1 2 316 3 0 11 chain 170147 chrX 156040895 + 34167157 34169233 L1PA7 6471 + 3194 5265 11098 384 1 6 118 1 0 134 15 2 131 0 1 304 1 0 27 1 2 104 0 1 49 0 1 259 0 2 70 0 1 40 1 0 125 1 0 310 chain 20202 chrX 156040895 + 34215436 34215861 MSTA 426 + 0 426 56136 28 13 14 17 7 17 26 4 6 91 19 15 11 40 24 24 37 45 108 chain 6058 chrX 156040895 + 34215861 34215936 MSTA-int 1630 + 0 75 80877 75 chain 5938 chrX 156040895 + 34216452 34216525 L1PA15 4387 + 4234 4307 81328 73 chain 15033 chrX 156040895 + 34232588 34232810 L1M1 2793 + 2452 2674 62221 177 4 3 10 3 4 28 chain 50307 chrX 156040895 + 34254529 34255109 L1PA7 6471 + 5886 6467 29451 404 0 5 156 1 0 8 3 0 8 chain 26830 chrX 156040895 + 34293821 34294159 THE1C 375 + 17 359 46500 123 0 5 38 1 0 176 chain 25706 chrX 156040895 + 34295743 34296121 THE1C 375 + 0 375 48160 18 4 1 141 34 35 161 1 0 19 chain 11920 chrX 156040895 + 34323999 34324234 L1PB2 3958 + 3579 3812 66966 25 18 17 60 2 3 31 20 21 12 3 1 26 2 1 36 chain 3297 chrX 156040895 + 34333245 34333310 Tigger3b 1229 + 510 571 97046 33 4 5 14 5 0 9 chain 209519 chrX 156040895 + 34343976 34346528 L1PA8A 6298 + 3704 6276 9362 170 1 3 447 0 13 18 0 2 468 1 0 35 1 2 627 1 2 87 1 2 367 1 0 190 0 2 137 chain 179140 chrX 156040895 + 34367253 34369849 L1PB2 3958 + 1250 3838 10626 49 0 4 13 4 8 147 20 23 81 3 0 5 0 3 9 7 0 173 8 6 42 7 8 93 4 3 39 4 6 456 3 0 6 1 7 50 3 0 235 8 10 19 7 8 30 0 1 136 7 6 383 2 0 51 2 1 13 5 0 77 4 0 18 0 4 70 3 2 72 1 0 62 1 0 62 12 9 24 5 4 60 chain 58952 chrX 156040895 + 34374154 34375157 L1MA1 4479 + 3179 4156 26679 72 1 0 12 5 0 71 60 57 119 5 3 202 1 0 9 12 11 4 1 0 16 1 0 7 1 2 6 0 3 20 7 5 28 1 0 14 2 0 19 1 0 88 1 0 5 3 0 126 10 9 20 2 0 35 2 1 8 1 0 5 chain 22749 chrX 156040895 + 34393389 34393632 L1PA2 6032 + 5788 6031 52759 243 chain 539638 chrX 156040895 + 34415190 34421162 L1PA3long 6157 + 4 6150 1361 147 1 2 73 0 37 513 0 128 1325 0 7 3063 0 1 850 chain 36891 chrX 156040895 + 34425614 34426029 L1PA4 6152 + 5728 6143 36823 415 chain 3717 chrX 156040895 + 34426631 34426755 LTR16E2 555 + 431 553 93488 14 5 0 7 58 61 40 chain 113707 chrX 156040895 + 34441104 34445105 L1PB1 5432 + 3727 5420 16586 51 2119 0 150 0 1 221 2 1 72 0 12 170 1 0 188 0 3 32 14 9 71 1 0 40 1 0 347 14 10 9 160 0 24 1 0 5 20 15 10 2 0 40 1 0 12 2 1 16 2 1 37 6 5 14 26 14 19 8 5 14 2 0 24 10 9 12 1 0 13 1 0 16 chain 89842 chrX 156040895 + 34457635 34458682 L1P1 4361 + 4 1050 19711 1030 1 0 16 chain 16914 chrX 156040895 + 34496850 34497029 L1PA3long 6157 + 5835 6014 59895 179 chain 12588 chrX 156040895 + 34497029 34497170 L1PA3long 6157 + 6015 6156 65817 141 chain 24460 chrX 156040895 + 34502767 34503062 AluSp 311 + 10 305 50093 115 2 0 151 3 5 24 chain 60716 chrX 156040895 + 34508382 34509167 L1PB 1623 + 742 1516 26172 545 0 1 17 1 0 141 1 0 7 3 1 30 11 7 10 5 1 14 chain 20944 chrX 156040895 + 34551284 34551653 THE1D 372 + 11 372 55203 42 9 0 21 3 0 6 28 32 54 1 0 15 17 19 21 4 3 148 chain 183180 chrX 156040895 + 34553894 34556558 MER57-int 2662 + 40 2662 10428 30 57 38 35 0 1 38 1 0 120 2 0 12 8 6 199 0 3 232 0 1 64 2 0 222 1 0 46 1 5 302 7 5 442 17 0 13 0 2 52 3 0 160 11 31 173 4 5 50 13 10 87 18 12 19 5 19 27 22 10 7 2 0 25 1 0 7 1 0 4 8 5 24 1 0 6 17 12 23 4 1 31 2 0 6 chain 33282 chrX 156040895 + 34569322 34569762 LTR7 482 + 0 474 39277 101 15 14 29 0 3 116 1 32 70 5 6 103 chain 30310 chrX 156040895 + 34647913 34648457 L1PREC2 3366 + 2437 2963 41749 42 2 0 50 8 10 141 0 10 25 1 2 30 1 0 5 2 0 54 1 0 44 1 0 3 6 0 11 32 24 12 2 0 6 3 0 15 12 10 21 3 0 11 chain 2938 chrX 156040895 + 34671805 34671836 Tigger4a 237 + 206 237 100529 31 chain 23725 chrX 156040895 + 34682953 34683254 THE1C 375 + 37 335 51239 88 3 0 210 chain 21550 chrX 156040895 + 34748301 34748548 L1PA5 6144 + 5897 6144 54436 247 chain 72118 chrX 156040895 + 34774322 34775242 L1PA8 5853 + 4947 5853 23506 589 0 1 27 1 0 36 11 8 92 13 4 36 2 1 19 1 0 93 chain 79631 chrX 156040895 + 34796023 34797045 MER11C 1089 + 0 1056 21711 220 0 5 34 0 3 57 1 18 188 0 1 8 17 16 36 12 13 169 6 14 274 chain 78017 chrX 156040895 + 34800274 34801407 HERVK11-int 2540 + 1155 2245 22097 18 8 7 8 3 0 27 10 0 13 11 10 15 12 1 36 21 1 353 0 1 74 17 12 104 1 0 190 6 5 74 5 9 120 0 5 7 chain 80924 chrX 156040895 + 34802389 34803407 MER11C 1089 + 1 1052 21454 224 0 1 33 0 3 31 0 3 23 1 18 249 12 13 169 6 14 270 chain 49975 chrX 156040895 + 34820157 34820686 L1HS 6032 + 4680 5209 29573 529 chain 76905 chrX 156040895 + 34822769 34823957 L1PB 1623 + 356 1525 22345 49 4 3 5 1 0 69 9 8 131 19 20 96 20 2 43 1 4 322 23 25 7 0 8 157 1 0 141 1 0 7 2 1 26 12 8 13 4 0 14 1 0 10 chain 81270 chrX 156040895 + 34841396 34842459 L1PA8 5853 + 4793 5853 21373 150 0 1 54 0 1 4 1 0 4 0 2 75 0 2 465 12 11 48 2 0 72 1 0 5 3 1 50 9 8 14 3 2 91 chain 9444 chrX 156040895 + 34846355 34846461 L1P3 4156 + 3766 3872 71615 106 chain 40947 chrX 156040895 + 34912460 34913178 L1PB1 5432 + 4717 5404 34004 77 18 19 25 1 0 265 3 2 8 2 1 24 8 6 10 12 8 6 2 0 52 2 1 16 1 0 45 1 0 12 52 38 14 2 0 24 1 0 22 1 0 12 chain 13368 chrX 156040895 + 34933914 34934275 L1PA13 3608 + 114 460 64517 22 6 7 19 116 106 23 2 0 118 15 14 5 1 0 17 2 0 15 chain 54067 chrX 156040895 + 35068991 35069602 L1PA5 6144 + 4696 5308 28201 597 0 1 14 chain 77474 chrX 156040895 + 35071190 35072135 L1PA8A 6298 + 4263 5211 22201 186 1 0 98 0 4 149 1 0 190 0 1 320 chain 36148 chrX 156040895 + 35090182 35090669 MER9a3 513 + 15 513 37314 4 0 1 236 19 18 109 21 31 21 0 1 77 chain 93038 chrX 156040895 + 35114092 35115162 MER11C 1089 + 0 1073 19175 525 0 1 73 0 1 326 1 2 145 chain 233469 chrX 156040895 + 35138379 35140994 L1PA5 6144 + 3539 6144 8650 541 4 0 1563 0 2 24 0 2 318 10 1 42 1 0 112 chain 35415 chrX 156040895 + 35200038 35200448 L1P1 4361 + 3931 4341 37769 217 0 2 155 1 0 23 2 1 12 chain 219990 chrX 156040895 + 35221419 35223876 L1HS 6032 + 0 2456 9042 137 0 1 118 2 0 2200 chain 8662 chrX 156040895 + 35268695 35268820 L1PB1 5432 + 5161 5281 73318 6 2 0 18 1 0 35 2 1 16 1 0 44 chain 98883 chrX 156040895 + 35270412 35271487 L1PA3long 6157 + 5070 6144 18427 932 1 0 142 chain 2502 chrX 156040895 + 35304744 35304791 THE1C-int 1605 + 157 201 103645 13 10 7 24 chain 3655 chrX 156040895 + 35313189 35313233 MLT1B 390 + 319 363 93956 44 chain 54341 chrX 156040895 + 35323304 35324197 L1MA1 4479 + 3279 4148 28107 37 4 0 4 1 0 68 7 5 120 7 5 33 12 5 20 0 1 138 1 0 24 2 0 8 0 1 7 5 4 67 30 33 88 9 5 126 1 0 7 4 3 19 7 5 30 1 0 6 chain 10286 chrX 156040895 + 35401210 35401349 L1P4 1494 + 682 816 69837 85 1 0 18 4 0 31 chain 24440 chrX 156040895 + 35440231 35440546 MER4E 760 + 441 755 50114 92 7 5 145 1 2 70 chain 25585 chrX 156040895 + 35451795 35452138 THE1A 353 + 0 341 48341 84 0 1 4 1 0 21 1 0 93 3 5 6 3 0 127 chain 45326 chrX 156040895 + 35462271 35462851 LTR10C 591 + 11 591 31407 23 3 1 474 5 2 18 7 12 50 chain 95290 chrX 156040895 + 35499092 35500474 LTR12C 1709 + 0 1513 18869 23 1 0 225 1 0 90 0 43 80 61 16 129 0 1 112 0 118 160 41 0 28 5 93 90 24 0 16 11 4 285 chain 6375 chrX 156040895 + 35513274 35513432 MER21A 919 + 54 203 79760 27 40 44 30 1 0 16 18 6 26 chain 122121 chrX 156040895 + 35531749 35533618 L1PA10 4194 + 175 1982 15176 13 2 0 11 3 0 7 3 1 9 11 8 8 2 0 10 36 32 13 1 0 7 45 19 23 2 0 20 1 0 6 3 2 10 1 0 8 20 0 13 0 1 4 7 8 80 4 2 34 14 17 319 0 1 212 2 1 238 0 1 100 1 0 43 16 15 103 4 0 193 2 10 205 chain 111576 chrX 156040895 + 35554218 35555789 L1PA11 4918 + 3038 4567 16868 4 0 1 174 0 1 316 0 1 508 18 9 272 0 1 4 30 12 7 0 1 15 9 9 20 2 1 10 2 0 70 2 0 10 5 4 20 4 0 9 31 22 15 1 0 13 chain 189379 chrX 156040895 + 35596233 35599156 L1PB1 5432 + 2779 5422 10144 63 2 1 41 0 2 33 0 1 47 0 1 735 11 38 221 2 0 137 2 0 530 2 1 420 0 8 45 1 0 11 281 0 19 32 26 9 2 0 52 6 5 12 1 0 45 75 59 5 2 0 24 1 0 22 1 0 12 1 0 18 chain 26294 chrX 156040895 + 35609424 35609792 LTR7B 505 + 32 472 47278 76 0 10 57 0 38 12 3 27 25 1 3 85 1 0 76 18 17 14 chain 36941 chrX 156040895 + 35622600 35623041 LTR22A 463 + 0 441 36780 441 chain 9192 chrX 156040895 + 35676522 35676746 L1PB1 5432 + 5221 5422 72136 16 1 0 40 7 6 13 14 1 30 36 31 12 1 0 21 1 0 13 1 0 18 chain 58554 chrX 156040895 + 35694621 35695389 MER4E1 777 + 0 769 26804 21 1 2 441 0 1 22 1 5 46 9 7 6 2 0 73 4 3 142 chain 43515 chrX 156040895 + 35823430 35823987 MER4A 717 + 125 678 32444 516 13 9 28 chain 14837 chrX 156040895 + 35867257 35867462 THE1B 368 + 151 355 62468 21 13 12 171 chain 5995 chrX 156040895 + 35890730 35890992 LTR41 747 + 5 304 81095 31 32 33 30 39 43 21 61 31 12 10 72 26 chain 95666 chrX 156040895 + 35901236 35902417 L1P3 4156 + 2959 4137 18819 357 0 1 703 1 0 87 2 0 7 2 1 22 chain 26640 chrX 156040895 + 36003597 36003955 L1PREC2 3366 + 2043 2412 46771 116 0 1 105 0 8 113 10 12 14 chain 60555 chrX 156040895 + 36012010 36012830 L1PA8 5853 + 5028 5853 26212 22 0 8 18 9 11 350 0 1 126 1 0 37 8 7 62 0 2 6 23 19 43 2 1 19 1 0 93 chain 22520 chrX 156040895 + 36041671 36041948 AluSc8 310 + 30 307 53094 277 chain 4429 chrX 156040895 + 36048714 36048791 MADE1 96 - 5 96 88739 33 13 27 31 chain 110975 chrX 156040895 + 36050153 36051777 THE1B-int 1605 + 0 1605 16940 12 5 4 100 15 14 4 0 1 18 54 0 117 20 26 101 0 64 185 0 1 258 0 3 5 13 10 32 14 15 121 42 4 303 0 1 90 0 1 115 chain 104343 chrX 156040895 + 36079697 36080935 L1PA6 6164 + 4922 6159 17778 393 1 0 188 6 8 69 1 0 567 1 0 12 chain 8740 chrX 156040895 + 36135069 36135281 L1PB1 5432 + 5236 5407 73116 44 1 0 16 3 0 6 16 6 17 26 21 24 1 0 21 1 0 8 20 0 8 chain 25617 chrX 156040895 + 36204295 36204583 L1PA4 6152 + 5856 6146 48285 36 0 1 110 0 1 142 chain 48327 chrX 156040895 + 36215637 36216195 LTR22 571 + 0 571 30172 27 0 13 531 chain 33978 chrX 156040895 + 36219531 36219997 MER4A1 472 + 0 472 38723 226 1 22 20 17 7 121 14 9 67 chain 56953 chrX 156040895 + 36297943 36298564 L1PA3long 6157 + 5531 6152 27286 621 chain 9606 chrX 156040895 + 36336002 36336168 MER73 639 + 0 172 71252 76 8 16 25 18 17 23 1 0 15 chain 41420 chrX 156040895 + 36343182 36343703 L1PA8 5853 + 4937 5466 33722 8 0 4 56 1 3 72 8 7 50 0 1 139 1 3 186 chain 14869 chrX 156040895 + 36344078 36344243 L1PA2 6032 + 5867 6032 62426 165 chain 93708 chrX 156040895 + 36346798 36347942 L1PA6 6164 + 5014 6162 19079 278 0 4 98 3 4 156 0 3 175 0 1 423 5 0 6 chain 47562 chrX 156040895 + 36423816 36424450 MER41B 635 + 0 635 30456 43 0 1 81 4 5 326 20 19 160 chain 48677 chrX 156040895 + 36488391 36488983 L1PA7 6471 + 5884 6467 30060 522 0 2 15 12 1 43 chain 10214 chrX 156040895 + 36552066 36552192 THE1C 375 + 250 375 69984 99 1 0 26 chain 5168 chrX 156040895 + 36577408 36577488 MADE1 96 - 0 96 84827 33 9 25 38 chain 73486 chrX 156040895 + 36662039 36662920 MER11D 897 + 0 897 23224 119 8 5 5 0 3 285 8 0 157 0 23 186 0 1 113 chain 14749 chrX 156040895 + 36690300 36690502 THE1D 372 + 0 193 62601 56 16 7 130 chain 16094 chrX 156040895 + 36697746 36697949 L1P3 4156 + 3831 4035 60900 153 0 1 50 chain 46155 chrX 156040895 + 36737164 36737721 MLT2A2 560 + 0 560 30982 35 1 2 46 0 1 119 0 1 356 chain 9009 chrX 156040895 + 36752242 36752357 MSTB 430 + 300 415 72538 115 chain 8988 chrX 156040895 + 36826077 36826191 L1PB4 2604 + 2407 2531 72582 74 0 10 40 chain 12302 chrX 156040895 + 36903895 36904043 THE1B 368 + 209 357 66287 148 chain 115114 chrX 156040895 + 36904054 36905559 THE1B-int 1605 + 0 1600 16372 98 52 25 183 1 2 122 0 25 683 0 4 208 0 92 158 chain 19165 chrX 156040895 + 36905564 36905912 THE1B 368 + 0 368 57382 17 4 0 22 16 31 12 8 31 36 22 19 6 0 2 68 15 0 56 0 2 66 chain 171021 chrX 156040895 + 36914504 36916411 L1PA4 6152 + 4237 6146 11049 897 0 1 10 0 1 833 1 0 4 0 1 162 chain 15287 chrX 156040895 + 36952081 36952287 MER57B1 401 + 0 207 61929 93 9 10 104 chain 30373 chrX 156040895 + 36955056 36955451 MER57B1 401 + 0 401 41697 13 0 3 226 5 6 118 0 2 33 chain 114818 chrX 156040895 + 36997866 37000000 MER61-int 3695 + 1873 3441 16410 69 3 5 152 14 15 24 1 0 286 0 1 114 2 0 76 3 0 23 0 1 126 1 0 62 73 71 254 569 5 177 0 1 18 0 1 87 chain 21320 chrX 156040895 + 36999161 36999461 MER61-int 3695 + 3157 3456 54736 150 2 1 45 0 1 48 1 0 54 chain 7704 chrX 156040895 + 36999624 36999705 MER61-int 3695 + 3071 3152 75620 81 chain 57722 chrX 156040895 + 37029184 37029879 L1PA8 5853 + 4206 4902 27043 459 0 1 236 chain 32177 chrX 156040895 + 37030444 37030897 LTR2 463 + 0 463 40212 61 0 3 42 10 17 237 27 28 19 1 0 56 chain 3084 chrX 156040895 + 37040562 37040595 MER58A 224 + 50 83 98951 33 chain 17470 chrX 156040895 + 37048177 37048379 THE1D-int 1627 + 13 214 59272 25 1 0 176 chain 7431 chrX 156040895 + 37291826 37292127 MER70A 477 + 167 475 76304 31 134 139 14 0 1 34 46 47 42 chain 25278 chrX 156040895 + 37396339 37396692 THE1B 368 + 0 368 48819 44 0 15 49 1 0 58 7 6 22 7 5 107 0 4 58 chain 508019 chrX 156040895 + 37398040 37403626 L1PA3long 6157 + 552 6144 2848 151 1 0 4 0 1 34 1 0 2386 2 1 1786 0 3 386 0 4 516 0 1 319 chain 3925 chrX 156040895 + 37421685 37421727 MER4E1 777 + 663 705 91949 42 chain 23766 chrX 156040895 + 37422983 37423474 Tigger3 1187 + 359 738 51170 178 100 0 22 7 0 14 1 0 27 1 0 22 2 1 41 5 2 13 1 17 8 15 0 34 chain 6032 chrX 156040895 + 37465064 37465135 LTR56 451 + 13 84 80954 71 chain 4007 chrX 156040895 + 37468042 37468086 tRNA-Met 55 + 0 44 91407 44 chain 13831 chrX 156040895 + 37473450 37473649 LTR56 451 + 120 325 63824 15 0 1 24 12 17 148 chain 35166 chrX 156040895 + 37478341 37478816 LTR10F 562 + 0 562 37914 75 0 1 31 1 85 21 16 19 22 6 1 42 0 1 112 0 1 93 0 1 39 0 1 17 chain 208414 chrX 156040895 + 37481249 37484248 HERVIP10FH-int 2884 + 148 2876 9404 60 4 0 86 0 2 101 12 6 284 0 5 516 2 0 140 0 4 28 4 1 7 3 0 11 1 0 7 1 0 19 2 1 43 5 0 115 1 0 4 8 5 20 4 1 13 45 25 14 28 3 43 22 10 39 10 0 3 1 0 15 5 4 67 0 15 185 0 1 199 1 0 26 1 0 16 4 6 341 1 0 66 1 0 39 12 11 17 1 0 8 15 9 35 205 23 8 2 0 16 2 0 5 chain 44679 chrX 156040895 + 37484307 37484837 LTR10F 562 + 0 562 31750 200 0 31 273 0 1 57 chain 74729 chrX 156040895 + 37544196 37545042 L1PA5 6144 + 5276 6128 22910 18 1 0 695 1 8 131 chain 35664 chrX 156040895 + 37560513 37560946 L1P1 4361 + 1 434 37465 433 chain 228503 chrX 156040895 + 37560946 37563492 L1PA5 6144 + 2963 5509 8787 2546 chain 99805 chrX 156040895 + 37648396 37649565 L1PA8A 6298 + 5115 6291 18318 374 1 4 9 0 1 16 0 1 48 0 2 721 chain 43511 chrX 156040895 + 37748287 37748795 L1P3 4156 + 3387 3897 32448 90 0 3 14 1 0 403 chain 3963 chrX 156040895 + 37752809 37752869 L1MA4 2864 + 2479 2539 91673 18 3 2 21 0 1 18 chain 547194 chrX 156040895 + 37768611 37774754 L1PA4 6152 + 1 6143 910 630 0 1 2541 1 0 2128 1 0 842 chain 2170 chrX 156040895 + 37803237 37803314 MADE1 96 - 0 96 105444 16 23 42 38 chain 35616 chrX 156040895 + 37821604 37822058 L1PA8 5853 + 5392 5853 37651 172 1 0 45 2 0 73 1 0 5 0 13 40 2 1 19 3 2 91 chain 22370 chrX 156040895 + 37831513 37831765 L1PA7 6471 + 6218 6470 53312 252 chain 24765 chrX 156040895 + 37856036 37856326 AluSp 311 + 4 293 49638 121 1 0 168 chain 40466 chrX 156040895 + 37860709 37861209 LTR19A 502 + 0 502 34338 6 0 2 47 0 1 248 1 0 198 chain 9155 chrX 156040895 + 37870109 37870214 U6 107 + 1 106 72221 105 chain 56033 chrX 156040895 + 37870214 37870835 L1PA5 6144 + 5519 6144 27551 167 0 4 454 chain 52215 chrX 156040895 + 37889929 37890588 PABL_A 660 + 0 660 28813 222 0 1 45 1 0 10 4 5 303 1 0 4 1 2 68 chain 5254 chrX 156040895 + 37890740 37890804 L1MB8 1703 + 954 1018 84423 64 chain 17179 chrX 156040895 + 37909371 37909594 MER30 238 + 0 238 59597 108 3 18 112 chain 22244 chrX 156040895 + 37947250 37947615 THE1D 372 + 0 372 53487 62 0 3 5 11 8 82 30 36 10 17 18 148 chain 35516 chrX 156040895 + 38003343 38003739 L1PA4 6152 + 4256 4653 37713 388 0 1 8 chain 16645 chrX 156040895 + 38004348 38004576 L1MA2 4263 + 3832 4058 60218 124 11 9 93 chain 3015 chrX 156040895 + 38006203 38006240 MIR 256 + 189 226 99694 37 chain 5292 chrX 156040895 + 38024624 38024691 MIR 256 + 79 149 84232 59 0 3 8 chain 6729 chrX 156040895 + 38184960 38185051 MER3 215 + 125 215 78544 5 1 0 85 chain 5503 chrX 156040895 + 38198968 38199044 MADE1 96 + 2 96 83220 29 0 9 12 0 9 35 chain 12326 chrX 156040895 + 38227149 38227350 L1PA8 5853 + 5640 5834 66254 35 30 25 40 2 1 19 2 1 73 chain 15523 chrX 156040895 + 38314843 38315047 L1MA2 4263 + 3842 4044 61621 114 11 9 79 chain 10614 chrX 156040895 + 38376632 38376807 L1M1 2793 + 2509 2686 69201 96 24 27 39 3 2 13 chain 17309 chrX 156040895 + 38418564 38418926 THE1B 368 + 0 368 59442 80 1 2 20 35 36 37 61 65 37 0 1 28 7 6 56 chain 10952 chrX 156040895 + 38419730 38419918 L1MA7 2200 + 1871 2040 68617 78 2 0 28 38 21 42 chain 11553 chrX 156040895 + 38462796 38462925 L1PA4 6152 + 6022 6151 67651 129 chain 3329 chrX 156040895 + 38491411 38491457 MER20 218 + 176 218 96773 13 4 0 29 chain 85807 chrX 156040895 + 38497022 38498570 L1PB1 5432 + 4240 5422 20488 388 3 0 75 0 2 212 0 4 179 46 14 20 1 0 13 1 0 9 2 0 3 2 0 8 2 0 53 3 2 14 1 0 44 1 0 16 3 0 6 332 17 8 2 0 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 18 chain 45596 chrX 156040895 + 38509056 38509773 L1PA15 4387 + 3649 4356 31263 164 1 2 4 0 1 70 2 0 16 3 2 24 1 0 85 0 2 85 2 1 11 5 10 4 1 0 54 2 1 13 8 0 6 0 4 9 1 0 50 7 4 18 0 3 22 3 1 15 5 0 26 chain 43675 chrX 156040895 + 38522147 38522636 L1PA3long 6157 + 4806 5295 32332 489 chain 7580 chrX 156040895 + 38526362 38526455 L1PB1 5432 + 4543 4637 75907 85 0 1 8 chain 53219 chrX 156040895 + 38528725 38529331 L1PA5 6144 + 5538 6142 28494 229 0 1 361 3 0 13 chain 157003 chrX 156040895 + 38536029 38537745 L1PA3long 6157 + 4438 6153 11939 203 1 0 1512 chain 2800 chrX 156040895 + 38540707 38540750 MER110A 451 + 8 82 101647 26 1 32 16 chain 13043 chrX 156040895 + 38541615 38541773 L1PA6 6164 + 5999 6158 65040 19 0 1 139 chain 28896 chrX 156040895 + 38577498 38577812 L1PA4 6152 + 5825 6140 43485 123 0 1 191 chain 148286 chrX 156040895 + 38604664 38606270 L1PA3long 6157 + 3749 5355 12468 1606 chain 5310 chrX 156040895 + 38608215 38608275 U7 62 + 1 61 84150 60 chain 15009 chrX 156040895 + 38616463 38616655 MER107 203 + 0 203 62261 50 0 1 5 0 1 56 1 0 36 0 4 20 0 6 24 chain 16712 chrX 156040895 + 38663209 38663541 L1PB1 5432 + 5122 5422 60140 16 1 0 8 1 0 10 2 0 3 2 0 9 2 0 52 2 1 16 1 0 27 2 1 16 1 0 20 23 11 14 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 22441 chrX 156040895 + 38712199 38712497 L1PA8 5853 + 5560 5853 53212 48 2 0 48 0 1 22 1 0 10 1 0 55 2 1 15 1 0 93 chain 3120 chrX 156040895 + 38726080 38726113 MER61A 341 + 308 341 98628 33 chain 269029 chrX 156040895 + 38726865 38730771 MER61-int 3695 + 1 3695 7732 27 6 4 6 2 0 8 2 0 58 10 11 156 2 1 139 15 1 84 311 0 51 1 2 29 5 8 52 0 96 111 13 18 18 13 12 137 1 0 4 0 1 191 0 3 434 3 0 522 1 6 232 1 2 16 4 2 322 1 0 84 21 20 26 0 1 7 9 1 241 0 1 4 11 8 192 1 2 7 0 16 187 0 4 45 0 1 83 chain 29964 chrX 156040895 + 38744383 38744797 L1PA16 3655 + 3171 3576 42088 7 6 0 24 1 0 78 12 10 286 chain 30712 chrX 156040895 + 38758732 38759107 THE1C 375 + 0 375 41379 181 0 1 167 1 0 26 chain 5937 chrX 156040895 + 38782706 38782812 MLT1C-int 1263 + 1032 1143 81332 64 19 25 18 1 0 4 chain 9034 chrX 156040895 + 38882432 38882568 MER2 342 + 163 318 72486 86 14 33 36 chain 91382 chrX 156040895 + 38889028 38890117 L1PA8A 6298 + 5194 6291 19438 289 2 1 5 0 7 72 0 2 721 chain 22858 chrX 156040895 + 38900262 38900658 MLT1A0-int 1658 + 0 415 52567 106 29 47 88 19 19 20 12 12 29 5 6 88 chain 197083 chrX 156040895 + 38909458 38911632 L1PA4 6152 + 3960 6134 9805 1341 2 1 699 0 1 132 chain 521286 chrX 156040895 + 39088509 39095555 L1PA7 6471 + 0 6463 2214 147 0 2 254 0 1 1745 321 0 110 0 2 275 5 31 39 4 0 29 17 0 8 1 0 5 0 1 116 8 0 83 0 5 197 58 0 87 0 26 366 2 1 18 4 8 229 12 59 157 11 9 275 312 0 238 0 4 1093 3 2 87 0 1 197 4 14 340 0 10 41 0 2 125 1 2 22 chain 12642 chrX 156040895 + 39119978 39120186 L1MA5 2750 + 2455 2661 65729 27 4 5 77 14 13 53 3 2 16 1 0 13 chain 3526 chrX 156040895 + 39135889 39135931 MIR 256 + 78 120 95047 42 chain 59230 chrX 156040895 + 39198574 39199221 L1PA3long 6157 + 5513 6157 26595 629 3 0 15 chain 21928 chrX 156040895 + 39212196 39212526 THE1C 375 + 46 375 53930 69 19 16 52 22 25 141 1 0 26 chain 18393 chrX 156040895 + 39270866 39271093 L1PA15 4387 + 2639 2865 58252 205 1 0 21 chain 113325 chrX 156040895 + 39275434 39276839 LTR12C 1709 + 0 1709 16628 338 0 43 83 4 0 1 1 0 6 1 0 179 0 278 184 1 0 4 4 2 106 11 4 399 1 0 82 chain 171258 chrX 156040895 + 39276854 39279014 SVA_D 2077 + 0 2066 11034 769 0 40 107 50 1 25 85 0 5 4 0 87 1 2 6 0 1 140 48 0 51 48 0 69 0 98 665 chain 3647 chrX 156040895 + 39277731 39277780 SVA_D 2077 + 1181 1231 40512 38 0 1 11 chain 6327 chrX 156040895 + 39277805 39277890 SVA_D 2077 + 1256 1341 40512 85 chain 2383 chrX 156040895 + 39278232 39278259 SVA_D 2077 + 1007 1034 75676 27 chain 96350 chrX 156040895 + 39281166 39282709 L1PA15 4387 + 2845 4365 18730 323 2 0 167 9 11 300 29 33 134 2 0 16 14 9 53 3 1 40 1 0 29 7 6 27 15 13 97 1 0 22 0 4 17 22 22 15 10 9 15 70 62 42 30 23 21 1 0 9 chain 24913 chrX 156040895 + 39302002 39302325 MSTA-int 1630 + 30 353 49409 13 0 1 4 1 0 305 chain 30845 chrX 156040895 + 39316348 39316709 L1PA6 6164 + 5796 6162 41270 35 0 1 317 0 4 9 chain 15001 chrX 156040895 + 39323499 39323889 L1MA6 2487 + 2069 2394 62268 28 4 5 127 176 109 35 0 1 20 chain 395429 chrX 156040895 + 39345308 39350778 L1PB1 5432 + 56 5417 5229 106 60 61 163 16 13 8 8 0 349 0 1 356 9 8 21 8 9 111 10 8 125 1 0 3 29 0 13 11 7 279 6 8 5 2 0 620 1 0 101 1 2 58 6 1 30 2 3 311 2 0 6 1 0 640 8 0 244 5 6 675 0 1 4 1 0 113 1 2 90 7 4 93 2 0 39 8 0 49 13 4 112 5 6 69 5 4 46 10 10 50 1 2 8 0 1 23 1 0 10 19 14 6 2 0 53 2 1 16 1 0 44 1 0 14 1 0 7 16 6 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 9 1 0 4 chain 2487 chrX 156040895 + 39388713 39389099 MLT1G1 539 + 0 398 103700 23 315 329 12 10 9 18 1 0 7 chain 16962 chrX 156040895 + 39460798 39461121 MSTB 430 + 26 410 59847 70 13 71 24 41 43 40 12 10 42 1 4 68 0 1 4 1 0 7 chain 3410 chrX 156040895 + 39512974 39513014 MER5B 177 + 65 105 95986 40 chain 362986 chrX 156040895 + 39544135 39548573 L1PA6 6164 + 1728 6162 5770 62 6 4 6 0 2 411 0 2 116 7 10 64 5 1 380 7 11 587 19 1 317 12 13 256 0 2 242 0 2 1098 0 5 90 1 4 742 4 0 6 chain 96544 chrX 156040895 + 39548581 39549716 L1PA7 6471 + 5320 6457 18710 302 10 13 71 1 0 751 chain 3963 chrX 156040895 + 39563030 39563152 L1MC5 759 + 561 706 91675 17 1 0 28 53 77 23 chain 5078 chrX 156040895 + 39573039 39573139 L1MA8 2339 + 2165 2257 85256 21 11 0 6 1 6 36 3 1 22 chain 25849 chrX 156040895 + 39587730 39588122 MSTA 426 + 2 407 47939 26 2 0 75 0 1 6 1 5 14 2 0 15 17 21 135 10 18 89 chain 68899 chrX 156040895 + 39635368 39636129 L1PA4 6152 + 5377 6141 24234 7 0 1 406 0 1 211 0 1 137 chain 30004 chrX 156040895 + 39650309 39650687 THE1C 375 + 0 375 42050 12 6 3 129 0 1 203 1 0 27 chain 22494 chrX 156040895 + 39658994 39659279 AluSp 311 + 0 282 53129 11 2 0 167 8 7 97 chain 33356 chrX 156040895 + 39684628 39685060 MER57A1 433 + 0 433 39210 280 3 4 149 chain 5203 chrX 156040895 + 39797706 39797767 MER45C 884 + 765 826 84665 61 chain 28762 chrX 156040895 + 39989531 39989908 THE1C 375 + 0 375 43688 184 1 0 5 10 9 177 chain 12626 chrX 156040895 + 40100587 40100728 AluSp 311 + 170 311 65761 141 chain 3110 chrX 156040895 + 40248405 40248461 LTR16A1 462 + 408 462 98703 16 10 8 30 chain 5704 chrX 156040895 + 40278615 40278679 MLT1A0 366 + 274 338 82321 64 chain 36667 chrX 156040895 + 40280791 40281266 MER41A 554 + 80 554 36973 12 0 1 58 0 1 243 19 16 143 chain 4150 chrX 156040895 + 40285827 40285879 MLT1G1 539 + 225 278 90464 41 0 1 11 chain 31140 chrX 156040895 + 40337836 40338239 L1PA8 5853 + 5450 5847 41024 53 0 1 60 1 0 45 2 0 69 2 1 14 1 0 47 2 1 19 1 0 87 chain 40466 chrX 156040895 + 40346819 40347504 L1PB1 5432 + 4797 5427 34337 282 9 6 18 1 2 9 15 0 20 1 0 13 1 0 9 6 2 10 7 5 47 2 1 15 1 0 44 1 0 16 1 0 4 3 0 8 9 0 17 17 10 13 3 1 21 1 0 21 1 0 13 1 0 15 1 0 4 1 0 4 chain 11755 chrX 156040895 + 40361232 40361428 MER2 342 + 132 342 67297 52 2 0 31 1 17 62 4 5 15 7 6 22 chain 3806 chrX 156040895 + 40428787 40428848 MLT1F2 592 + 2 74 92803 33 3 14 25 chain 26164 chrX 156040895 + 40430356 40430711 THE1A 353 + 0 353 47482 106 15 14 82 13 12 139 chain 128924 chrX 156040895 + 40430711 40432287 THE1A-int 1579 + 0 1579 14160 338 0 6 135 25 19 53 0 1 71 1 0 161 0 1 73 15 16 448 0 1 256 chain 12109 chrX 156040895 + 40432289 40432453 THE1A 353 + 2 202 66648 107 5 41 20 0 1 4 1 0 27 chain 12863 chrX 156040895 + 40432454 40432605 THE1A 353 + 202 353 65322 151 chain 3657 chrX 156040895 + 40454157 40454212 MADE1 96 - 0 96 93936 17 2 43 36 chain 6966 chrX 156040895 + 40492856 40492937 HY3 101 + 16 97 77721 81 chain 3006 chrX 156040895 + 40495837 40495873 MLT1H1 527 + 384 419 99794 6 1 0 29 chain 3190 chrX 156040895 + 40497288 40497334 MLT1D 503 + 305 353 97977 22 1 3 23 chain 26639 chrX 156040895 + 40499370 40499651 AluYa5 310 + 27 308 46773 281 chain 26708 chrX 156040895 + 40532547 40533298 L1PB2 3958 + 3408 3838 46673 31 2 0 13 12 8 49 9 1 30 3 0 6 2 1 18 0 6 5 6 0 40 2 1 25 303 1 36 1 0 70 0 2 24 2 1 62 chain 3400 chrX 156040895 + 40543458 40543526 Arthur1B 1073 + 894 959 96067 15 19 16 34 chain 10178 chrX 156040895 + 40652317 40652480 MER3 215 + 0 195 70061 46 9 36 74 1 7 21 1 0 11 chain 23841 chrX 156040895 + 40748275 40748633 THE1B 368 + 0 368 51035 168 5 4 28 9 14 14 7 15 43 1 0 20 7 6 56 chain 56514 chrX 156040895 + 40769843 40770463 L1PA3long 6157 + 5535 6157 27422 193 0 2 427 chain 11393 chrX 156040895 + 40770623 40770909 L1MB8 1703 + 1399 1626 67926 4 0 1 21 13 10 70 22 21 62 71 15 23 chain 414838 chrX 156040895 + 40794831 40800888 L1PB1 5432 + 59 5430 4963 182 0 1 161 1 0 8 10 11 122 1 0 690 1 2 159 1 0 7 18 12 58 0 2 67 336 0 55 0 6 12 1 0 560 4 1 12 0 1 303 3 1 6 3 0 342 18 2 7 0 1 169 298 0 545 7 10 6 3 0 148 1 4 110 2 12 239 0 3 454 1 0 71 0 1 481 1 0 13 7 0 22 1 0 9 16 11 11 3 1 47 11 4 11 6 5 44 1 0 15 3 0 17 9 0 14 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 1 0 6 chain 90791 chrX 156040895 + 40819054 40820279 HSMAR1 1287 + 0 1256 19537 105 15 20 94 4 14 30 0 3 127 5 8 36 1 0 112 4 8 43 0 3 73 0 1 232 26 29 318 chain 48272 chrX 156040895 + 40823126 40823698 LTR10C 591 + 0 589 30191 439 0 15 49 5 7 79 chain 120749 chrX 156040895 + 40861961 40863670 SVA_A 1864 + 454 1864 15392 10 37 0 70 0 3 23 27 0 203 1 0 41 3 0 9 43 0 74 3 2 236 33 0 20 1 0 98 156 0 621 chain 2638 chrX 156040895 + 40861971 40862008 SVA_A 1864 + 580 617 27815 37 chain 3321 chrX 156040895 + 40862385 40862428 SVA_A 1864 + 550 589 62596 22 13 9 8 chain 3079 chrX 156040895 + 40862893 40862933 SVA_A 1864 + 1059 1097 44598 2 2 0 36 chain 4861 chrX 156040895 + 40862935 40863049 SVA_A 1864 + 838 948 30005 38 3 0 9 1 0 63 chain 8960 chrX 156040895 + 40904137 40904247 L1MB3 1562 + 788 898 72652 110 chain 16453 chrX 156040895 + 40914090 40914307 MER30 238 + 0 230 60442 106 5 21 72 3 0 31 chain 14096 chrX 156040895 + 40922143 40922366 L1MB1 2102 + 1182 1386 63462 74 36 15 101 0 2 12 chain 40176 chrX 156040895 + 40926759 40927273 Tigger3b 1229 + 707 1228 34537 62 3 0 223 1 11 225 chain 25981 chrX 156040895 + 40954706 40955008 AluSp 311 + 0 298 47744 120 4 0 178 chain 31448 chrX 156040895 + 40959503 40959936 MER51A 677 + 0 661 40775 132 0 9 29 4 230 179 13 6 76 chain 10197 chrX 156040895 + 40961737 40961865 MER85 139 + 1 139 70016 92 0 11 6 1 0 29 chain 44216 chrX 156040895 + 40972693 40973294 MER41A 554 + 0 554 32003 131 6 7 315 10 6 11 45 1 83 chain 5638 chrX 156040895 + 41024409 41024498 LTR41 747 + 10 100 82605 34 9 10 46 chain 32669 chrX 156040895 + 41035068 41035459 L1PA7 6471 + 6075 6468 39788 228 0 1 4 1 2 158 chain 45658 chrX 156040895 + 41041046 41041839 L1MA4 2864 + 1452 2075 31228 106 175 0 149 6 19 4 0 1 281 8 0 33 1 0 30 chain 3598 chrX 156040895 + 41095060 41095117 Tigger4a 237 - 181 237 94446 25 6 5 26 chain 10368 chrX 156040895 + 41101766 41101959 L1MB8 1703 + 1349 1529 69672 14 7 0 31 0 11 17 4 3 4 1 0 59 1 0 33 14 0 8 chain 7654 chrX 156040895 + 41173995 41174102 Tigger3a 397 + 158 268 75741 18 0 4 47 6 5 36 chain 77771 chrX 156040895 + 41211567 41212475 SVA_D 2077 + 1119 2076 22151 62 51 2 120 0 98 675 chain 2984 chrX 156040895 + 41211629 41211680 SVA_D 2077 + 1406 1457 67059 51 chain 16582 chrX 156040895 + 41213322 41213542 MER47A 366 + 86 331 60283 66 2 28 73 1 0 78 chain 8196 chrX 156040895 + 41214386 41214484 L1PA6 6164 + 6066 6162 74419 88 2 0 8 chain 23900 chrX 156040895 + 41268574 41268913 THE1B 368 + 0 368 50942 44 5 39 81 5 4 20 9 6 99 1 0 75 chain 7807 chrX 156040895 + 41292797 41292887 5S 121 + 0 90 75361 90 chain 8344 chrX 156040895 + 41316487 41316587 HY3 101 + 0 100 74039 100 chain 12028 chrX 156040895 + 41384631 41384764 SVA_B 1603 + 1470 1603 66802 133 chain 43798 chrX 156040895 + 41390087 41391277 MER41A 554 + 0 554 32259 90 0 1 41 324 0 36 10 0 175 0 2 136 305 0 73 chain 11950 chrX 156040895 + 41423619 41423758 Tigger2 2703 + 2384 2523 66923 139 chain 9124 chrX 156040895 + 41456859 41457025 MLT1A0 366 + 0 159 72299 19 41 34 106 chain 33209 chrX 156040895 + 41487587 41488015 MER4A1 472 + 0 472 39340 14 0 2 206 5 26 86 3 22 97 0 2 17 chain 314561 chrX 156040895 + 41564652 41568244 L1PA6 6164 + 2568 6160 6515 622 0 1 31 1 0 398 0 1 222 0 1 805 2 0 1511 chain 16842 chrX 156040895 + 41600897 41601240 L1MB3 1562 + 1238 1549 59983 113 11 10 9 2 0 51 1 0 4 60 33 26 17 17 22 1 0 26 chain 170582 chrX 156040895 + 41611664 41613647 SVA_D 2077 + 0 2077 11081 530 1 0 34 0 40 95 0 40 78 40 0 100 2 0 26 45 5 86 2 4 11 1 0 4 0 1 39 2 0 219 0 98 649 1 0 18 chain 1045 chrX 156040895 + 41612402 41612442 SVA_D 2077 + 740 777 63431 9 4 4 7 3 0 17 chain 3867 chrX 156040895 + 41612570 41612615 SVA_D 2077 + 1130 1175 42216 45 chain 79028 chrX 156040895 + 41645238 41646593 HERVK11-int 2540 + 911 2189 21863 52 30 22 16 59 43 16 7 5 65 1 0 23 1 0 5 121 96 36 21 1 419 25 20 105 1 0 183 13 12 72 6 9 78 chain 24422 chrX 156040895 + 41680637 41680927 AluSp 311 + 1 294 50135 66 0 3 224 chain 4195 chrX 156040895 + 41682858 41682911 Tigger2 2703 + 1269 1323 90166 44 0 1 9 chain 23434 chrX 156040895 + 41707871 41708138 AluSc5 308 + 34 301 51704 267 chain 177712 chrX 156040895 + 41774084 41776044 L1PA3long 6157 + 4138 6156 10694 224 0 4 83 0 54 41 1 0 532 0 1 1079 chain 546584 chrX 156040895 + 41808592 41814751 L1PA5 6144 + 0 6144 933 290 18 0 1406 0 5 412 6 8 152 0 1 456 6 0 952 1 0 1636 7 7 584 0 2 233 chain 21583 chrX 156040895 + 41845965 41846279 L1MA2 4263 + 3803 4105 54383 6 3 0 147 11 9 93 22 15 32 chain 5520 chrX 156040895 + 41965124 41965190 MLT1A 405 + 338 404 83154 66 chain 11742 chrX 156040895 + 41979523 41979672 L1PA8 5853 + 5706 5853 67327 34 2 1 19 1 0 93 chain 8825 chrX 156040895 + 42003340 42004263 L1PA16 3655 + 1834 2757 24305 142 38 41 92 1 0 130 4 3 433 2 1 81 chain 541263 chrX 156040895 + 42004305 42010328 L1PA3long 6157 + 4 6157 1257 117 0 2 30 0 1 622 0 128 145 0 2 4256 1 0 845 2 0 5 chain 1673 chrX 156040895 + 42010343 42010518 L1PA16 3655 + 2776 2950 24305 109 0 1 4 1 0 13 2 1 46 chain 19284 chrX 156040895 + 42041438 42041805 THE1B 368 + 0 368 57255 63 68 64 49 0 2 7 29 24 4 0 1 18 0 8 66 1 0 62 chain 3435 chrX 156040895 + 42065618 42065661 MER33 330 + 240 283 95777 43 chain 11740 chrX 156040895 + 42116087 42116365 L1MA4 2864 + 2560 2805 67329 74 4 3 34 3 0 13 81 58 20 10 4 39 chain 11469 chrX 156040895 + 42135931 42136139 Tigger1 2417 + 2204 2416 67797 4 0 1 5 2 0 35 0 2 26 0 2 55 27 11 15 6 23 33 chain 25146 chrX 156040895 + 42167966 42168434 MLT2B2 565 + 11 563 49040 120 3 0 5 12 15 35 5 6 11 18 14 11 0 4 31 14 110 116 49 36 38 chain 145035 chrX 156040895 + 42256909 42259427 L1PB1 5432 + 1478 5417 12687 102 0 2 80 0 4 246 0 2 12 4 32 288 0 2 40 3 1 56 0 1 41 0 1764 8 4 0 63 8 7 124 10 11 253 0 1 10 4 1 15 0 1 62 372 17 101 0 10 156 0 3 15 10 9 85 1 0 10 2 1 24 1 0 8 1 0 10 10 6 6 2 0 45 26 24 45 1 0 14 23 12 18 28 23 21 1 0 22 2 1 11 1 0 13 chain 5686 chrX 156040895 + 42275955 42276042 MLT1C 463 + 63 144 82405 61 9 4 12 1 0 4 chain 3288 chrX 156040895 + 42303857 42303907 L1MB5 1630 + 1277 1330 97122 25 1 4 24 chain 441340 chrX 156040895 + 42306288 42312409 L1PA8A 6298 + 50 6288 4548 6 1 0 10 3 0 5 2 0 7 6 1 12 5 0 7 0 2 19 19 10 20 1 0 8 2 1 12 1 0 7 17 14 13 9 4 13 2 1 7 1 0 5 2 1 8 1 0 14 23 9 39 16 15 10 8 0 78 2 0 18 1 0 6 1 0 5 1 0 69 12 11 272 1 2 295 0 4 13 31 14 15 2 11 342 4 527 296 16 0 154 1 0 39 15 0 69 5 1 184 0 4 121 11 1 472 3 2 39 2 0 5 1 0 19 3 7 273 1 0 180 0 1 191 0 1 645 0 1 771 0 3 55 317 0 46 0 5 433 4 18 137 1 0 103 chain 42654 chrX 156040895 + 42343969 42344481 L1PA8A 6298 + 4862 5375 32967 451 0 2 5 1 0 55 chain 23466 chrX 156040895 + 42353356 42353659 AluSc5 308 + 7 299 51642 204 18 1 61 0 6 20 chain 8370 chrX 156040895 + 42415285 42415392 L1MB8 1703 + 1456 1563 73970 107 chain 27066 chrX 156040895 + 42435291 42435646 THE1B 368 + 0 368 46176 40 0 15 51 1 0 66 3 2 4 0 1 5 1 0 184 chain 63964 chrX 156040895 + 42449375 42450311 L1M1 2793 + 1739 2682 25418 118 0 1 141 9 13 32 1 2 58 1 4 124 4 8 30 31 28 133 20 19 178 1 0 40 2 1 13 chain 29793 chrX 156040895 + 42468608 42469028 LTR7Y 441 + 0 431 42239 103 9 0 58 63 83 187 chain 7135 chrX 156040895 + 42499864 42500000 MER2 342 + 33 174 77150 35 0 3 9 8 0 17 5 8 28 5 12 29 chain 523799 chrX 156040895 + 42506728 42513168 L1PA7 6471 + 0 6465 2101 189 0 1 140 3 0 5 4 7 61 6 0 116 2 3 92 0 1 541 2 18 107 1 0 4 7 8 50 0 2 364 0 2 359 0 1 60 1 0 98 2 0 293 7 11 108 13 0 888 1 0 83 1 0 396 2 1 26 0 1 71 6 17 118 4 5 360 1 3 56 0 8 156 1 0 769 0 4 18 1 0 221 3 2 471 1 10 7 11 0 133 chain 3280 chrX 156040895 + 42545557 42545593 L1PA8A 6298 + 6079 6115 97185 36 chain 13718 chrX 156040895 + 42545602 42545760 L1PA8A 6298 + 6133 6291 63993 114 2 0 5 0 2 37 chain 128789 chrX 156040895 + 42556869 42558785 L1PREC2 3366 + 878 2799 14180 156 6 5 54 7 8 166 41 43 59 20 19 22 4 0 7 8 12 167 8 0 14 4 0 73 9 10 80 2 0 49 0 2 64 11 12 41 0 1 398 1 4 4 3 0 193 4 9 30 4 16 31 0 1 89 2 0 35 9 6 41 chain 549502 chrX 156040895 + 42589689 42595809 L1PA3long 6157 + 4 6157 782 41 0 18 89 0 1 95 50 57 402 0 1 248 0 4 80 1 0 1352 0 4 1383 2 0 1331 0 1 1046 chain 21578 chrX 156040895 + 42647130 42647508 THE1C 375 + 0 374 54391 22 0 1 57 21 11 17 5 7 5 3 0 58 41 48 124 1 0 24 chain 1658 chrX 156040895 + 42647532 42647952 THE1C-int 1605 + 25 445 29057 28 15 6 270 0 8 39 1 2 67 chain 111448 chrX 156040895 + 42649288 42650739 L1PBa1 4058 + 1308 2990 16884 16 0 240 38 11 1 59 4 1 267 1 2 53 2 0 162 0 3 317 9 1 116 4 16 42 2 0 348 chain 537100 chrX 156040895 + 42650741 42656846 L1PA4 6152 + 0 6143 1503 122 8 22 221 0 1 1136 0 21 34 0 1 1625 1 0 772 0 1 1428 0 1 758 chain 102937 chrX 156040895 + 42657439 42658808 L1PB 1623 + 98 1453 17961 4 1 0 10 1 0 5 1 0 52 4 1 18 7 4 77 1 0 128 3 2 19 2 0 68 1 0 255 0 1 413 1 0 4 10 11 9 0 1 125 1 0 56 1 0 37 5 6 42 1 0 7 chain 2243 chrX 156040895 + 42660001 42660569 THE1C-int 1605 + 1031 1602 29057 31 7 10 242 0 1 4 1 0 283 chain 27232 chrX 156040895 + 42660572 42660933 THE1C 375 + 0 369 45924 103 10 19 227 1 0 20 chain 19563 chrX 156040895 + 42706745 42707006 AluY 311 + 34 286 56941 92 9 0 13 5 5 142 chain 19852 chrX 156040895 + 42749906 42750223 L1MA2 4263 + 3806 4114 56609 55 1 0 93 13 11 67 8 11 15 7 0 17 1 0 30 1 0 9 chain 5337 chrX 156040895 + 42750722 42750922 MER2 342 + 143 342 84019 36 120 119 44 chain 23683 chrX 156040895 + 42770542 42771012 LTR19A 502 + 0 502 51301 33 39 38 81 21 58 19 31 30 171 45 42 30 chain 7972 chrX 156040895 + 42821190 42821326 LTR49 580 + 0 135 74947 69 26 25 41 chain 51317 chrX 156040895 + 42833537 42834128 LTR10C 591 + 0 591 29119 34 2 0 474 0 2 81 chain 32604 chrX 156040895 + 42861051 42861473 MER57A1 433 + 15 433 39858 276 1 0 9 1 3 4 0 1 45 1 0 4 5 0 76 chain 556838 chrX 156040895 + 42888370 42894373 L1PA2 6032 + 21 6032 307 2169 0 1 324 0 8 1044 1 0 2465 chain 107062 chrX 156040895 + 42909582 42910776 L1PA5 6144 + 4946 6141 17428 347 0 2 737 1 0 109 chain 28004 chrX 156040895 + 42912851 42913156 AluYa5 310 + 0 303 44858 13 0 1 118 3 0 171 chain 31369 chrX 156040895 + 42980928 42981357 MLT2A1 477 + 0 477 40837 169 4 1 20 11 0 74 11 33 88 3 39 43 0 4 6 chain 9112 chrX 156040895 + 42988035 42988159 MER85 139 + 4 139 72319 25 1 2 59 0 10 39 chain 67285 chrX 156040895 + 43030811 43031578 L1PA5 6144 + 5368 6137 24625 434 0 1 186 1 2 146 chain 4669 chrX 156040895 + 43069981 43070037 L1M1 2793 + 1668 1724 87443 56 chain 19207 chrX 156040895 + 43072761 43072983 L1PA7 6471 + 6218 6440 57342 222 chain 20546 chrX 156040895 + 43077779 43078136 L1MA4 2864 + 1385 1744 55721 48 8 7 119 2 1 31 56 60 93 chain 3495 chrX 156040895 + 43081804 43081844 L1MD 993 + 741 781 95278 40 chain 24882 chrX 156040895 + 43098612 43098975 L1PA8 5853 + 5504 5853 49468 25 0 1 30 1 0 47 2 0 72 1 0 13 13 9 39 2 1 19 1 0 59 5 0 34 chain 111125 chrX 156040895 + 43171837 43173115 L1PA5 6144 + 4864 6144 16924 819 5 5 198 13 15 243 chain 62149 chrX 156040895 + 43295775 43296497 L1PA7 6471 + 5738 6464 25834 216 0 1 369 0 3 137 chain 52158 chrX 156040895 + 43350213 43350801 LTR10C 591 + 0 591 28826 113 0 3 475 chain 73006 chrX 156040895 + 43381487 43382516 L1PBa 3878 + 562 1605 23313 63 1 0 197 1 5 60 0 2 12 9 8 7 0 2 23 0 1 4 5 4 29 7 8 78 0 5 52 1 0 231 1 0 112 6 10 71 0 1 4 0 1 4 8 6 43 chain 34197 chrX 156040895 + 43382565 43383183 L1PB1 5432 + 4886 5422 38567 212 55 5 11 1 0 20 1 0 12 1 0 12 18 12 50 2 1 15 1 0 45 1 0 15 50 35 15 2 0 24 1 0 21 1 0 13 1 0 18 chain 12966 chrX 156040895 + 43388345 43388518 MSTA 426 + 245 426 65158 55 0 5 8 2 5 108 chain 44632 chrX 156040895 + 43401048 43401561 MER9a1 513 + 0 513 31775 513 chain 31346 chrX 156040895 + 43437680 43438063 L1PA7 6471 + 6087 6470 40850 330 2 1 39 0 1 12 chain 37602 chrX 156040895 + 43453649 43454244 MER34D 576 + 5 575 36335 10 3 0 183 23 28 12 24 0 18 1 3 29 4 0 19 1 0 221 20 20 27 chain 34052 chrX 156040895 + 43460879 43461413 MER34D 576 + 47 576 38669 160 12 15 51 3 4 33 3 2 82 2 0 21 9 0 98 32 35 28 chain 6892 chrX 156040895 + 43537090 43537174 MER34A 573 + 0 84 77985 84 chain 23622 chrX 156040895 + 43589027 43589279 L1HS 6032 + 5780 6032 51393 252 chain 15298 chrX 156040895 + 43621682 43621921 LTR8 732 + 0 269 61919 15 0 1 16 0 9 55 0 1 100 29 48 24 chain 25228 chrX 156040895 + 43623114 43623531 LTR7 482 + 0 473 48902 57 2 10 19 0 50 47 45 0 28 1 12 41 10 42 56 1 0 4 0 1 106 chain 7095 chrX 156040895 + 43682207 43682292 L1MC3 1789 + 1048 1133 77281 85 chain 24603 chrX 156040895 + 43764300 43764573 L1PA5 6144 + 5862 6134 49862 169 1 0 103 chain 69401 chrX 156040895 + 43781985 43782828 L1P3 4156 + 3301 4139 24140 193 1 0 40 0 3 7 0 1 118 5 0 444 2 0 8 1 0 24 chain 59920 chrX 156040895 + 43792304 43793124 L1PA16 3655 + 2705 3534 26397 178 0 4 17 1 0 18 1 0 179 0 11 86 20 19 73 3 1 124 1 0 119 chain 20785 chrX 156040895 + 43802673 43802945 L1PA8 5853 + 5587 5853 55387 21 2 0 70 2 1 15 1 0 46 2 1 19 1 0 93 chain 39544 chrX 156040895 + 43840492 43841018 L1P3 4156 + 0 516 34988 251 2 1 71 0 1 85 41 31 76 chain 30074 chrX 156040895 + 43854256 43854677 L1PA8 5853 + 5437 5853 41985 83 1 2 42 1 0 44 2 0 74 1 0 5 2 1 11 4 5 36 2 1 19 2 1 92 chain 24847 chrX 156040895 + 43870521 43870819 AluY 311 + 8 307 49522 124 0 1 174 chain 5750 chrX 156040895 + 43932428 43932629 MLT1D 503 + 0 186 82128 24 1 0 8 114 100 54 chain 35912 chrX 156040895 + 43983039 43983559 L1PA16 3655 + 3062 3578 37464 106 0 1 5 12 11 19 1 0 24 8 7 55 18 16 272 chain 56717 chrX 156040895 + 43987723 43988373 L1PA5 6144 + 5486 6141 27352 324 0 1 96 0 4 230 chain 3206 chrX 156040895 + 44003042 44003078 MLT2B1 522 + 482 518 97853 36 chain 40789 chrX 156040895 + 44045283 44047257 MER41A 554 + 0 554 34104 92 0 1 303 8 9 42 1436 14 93 chain 18194 chrX 156040895 + 44053804 44054024 L1PA7 6471 + 6248 6465 58467 211 3 0 6 chain 20115 chrX 156040895 + 44074422 44074736 L1PA16 3655 + 3331 3619 56244 99 0 1 148 3 0 9 41 17 14 chain 4739 chrX 156040895 + 44092339 44092650 MLT1G 592 + 70 473 87017 28 168 176 27 56 140 32 chain 2793 chrX 156040895 + 44158921 44159158 LTR16A 446 + 59 334 101694 16 148 185 13 31 32 29 chain 97115 chrX 156040895 + 44206034 44207792 L1PA17 2846 + 22 2503 18646 5 1 0 9 1 0 99 0 7 8 1 0 82 35 1044 126 1 0 4 0 1 179 10 11 51 18 19 166 2 0 24 3 1 32 1 0 4 0 1 111 14 7 138 9 22 52 311 0 24 0 13 204 1 0 23 0 5 9 chain 66726 chrX 156040895 + 44216589 44217480 L1MA2 4263 + 3138 4014 24763 112 5 1 77 0 1 238 2 1 15 9 5 74 1 0 82 4 3 55 7 4 150 11 9 49 chain 17662 chrX 156040895 + 44226695 44226901 L1PA7 6471 + 6261 6467 59050 206 chain 545988 chrX 156040895 + 44252834 44259546 L1PA7 6471 + 0 6459 970 400 5 3 111 0 12 15 4 5 349 0 1 104 0 1 30 21 25 323 1 0 1261 0 1 686 16 0 361 0 9 85 4 0 222 12 0 454 0 8 208 0 4 94 0 3 74 0 1 105 1 0 404 0 1 264 0 7 156 272 0 225 0 2 445 chain 2798 chrX 156040895 + 44280106 44280159 MER5B 177 - 125 177 101658 23 10 9 20 chain 37670 chrX 156040895 + 44299147 44299684 MER4B 649 + 0 568 36288 93 1 0 101 0 23 124 0 15 65 35 30 49 1 0 68 chain 10061 chrX 156040895 + 44300348 44300471 MLT1B 390 + 243 369 70280 91 0 3 32 chain 7431 chrX 156040895 + 44317410 44317503 L1MB5 1630 + 831 924 76302 93 chain 3029 chrX 156040895 + 44328760 44328792 MER51A 677 + 201 233 99520 32 chain 43674 chrX 156040895 + 44362436 44362930 LTR2C 499 + 0 499 32335 171 1 7 169 1 0 152 chain 4683 chrX 156040895 + 44368338 44368397 Tigger3b 1229 + 711 770 87366 59 chain 3158 chrX 156040895 + 44382065 44382101 U6 107 + 1 37 98282 36 chain 8057 chrX 156040895 + 44385909 44386023 MER41B 635 + 509 627 74737 7 0 4 41 1 2 4 1 0 60 chain 3609 chrX 156040895 + 44396952 44396994 Tigger1 2417 - 1643 1685 94345 42 chain 8000 chrX 156040895 + 44401602 44401701 HY3 101 + 0 99 74887 99 chain 23320 chrX 156040895 + 44427644 44427919 AluSp 311 + 14 289 51900 275 chain 25432 chrX 156040895 + 44438187 44438547 THE1B 368 + 7 368 48579 6 2 0 27 0 5 127 21 20 100 2 1 75 chain 11561 chrX 156040895 + 44469393 44469538 MLT1A0 366 + 0 142 67641 30 3 0 112 chain 22686 chrX 156040895 + 44536033 44536337 AluSg4 309 + 10 299 52842 12 8 0 131 12 5 141 chain 6867 chrX 156040895 + 44543239 44543452 MER31B 477 + 0 182 78076 37 3 0 11 69 74 19 1 0 26 32 0 15 chain 20596 chrX 156040895 + 44549183 44550501 LTR8 732 + 31 732 55638 9 5 0 117 1028 415 96 0 1 63 chain 101128 chrX 156040895 + 44575947 44578779 Tigger1 2417 + 29 1477 18167 13 16 1 11 1 0 164 773 0 100 24 28 97 0 1 91 5 6 13 7 16 419 0 1 49 0 3 26 6 1 67 0 11 37 0 2 189 3 0 44 620 1 57 chain 27844 chrX 156040895 + 44582174 44582546 THE1C 375 + 0 375 45114 183 3 4 92 0 1 67 6 7 21 chain 109369 chrX 156040895 + 44582593 44584386 THE1C-int 1605 + 47 1596 17132 49 0 57 176 0 6 75 0 1 34 0 7 219 1 0 7 77 78 482 0 1 182 316 0 175 chain 4779 chrX 156040895 + 44584835 44584907 THE1C 375 + 155 228 86799 30 7 8 35 chain 12069 chrX 156040895 + 44584908 44585053 THE1C 375 + 230 375 66717 145 chain 44981 chrX 156040895 + 44590398 44591674 LTR8 732 + 39 730 31593 118 0 6 63 0 1 94 0 27 178 684 61 58 0 2 24 0 2 57 chain 24057 chrX 156040895 + 44595220 44595491 AluSg4 309 + 30 301 50714 271 chain 4401 chrX 156040895 + 44609201 44609252 L1MB2 1706 + 1364 1415 88879 51 chain 32576 chrX 156040895 + 44766664 44767076 L1PA16 3655 + 2233 2648 39890 6 0 2 238 1 2 167 chain 38773 chrX 156040895 + 44778273 44778785 LTR12F 595 + 0 588 35514 100 6 18 25 3 1 8 0 66 370 chain 25134 chrX 156040895 + 44801257 44801556 AluSc5 308 + 8 307 49068 299 chain 26533 chrX 156040895 + 44821831 44822189 THE1C 375 + 0 355 46927 125 3 0 69 3 4 152 1 0 5 chain 118144 chrX 156040895 + 44822209 44823779 THE1C-int 1605 + 0 1599 15862 396 32 60 130 11 12 64 0 1 38 3 4 49 14 8 519 27 30 239 0 1 48 chain 119281 chrX 156040895 + 44836307 44838685 L1PB3 3668 + 1537 3185 15644 90 0 1 259 425 0 22 0 2 22 6 2 96 7 6 52 322 5 19 10 7 200 1 0 21 2 3 32 0 2 84 0 14 161 1 2 26 5 4 93 1 2 61 0 1 162 2 0 17 1 0 75 0 2 103 chain 4737 chrX 156040895 + 44913601 44913659 Tigger2a 444 + 291 353 87047 7 0 4 51 chain 42948 chrX 156040895 + 44950752 44951268 LTR10D 510 + 0 510 32809 95 4 0 23 2 0 113 1 0 38 1 2 239 chain 13326 chrX 156040895 + 45038597 45038768 L1PA8 5853 + 5688 5853 64579 8 3 0 44 2 1 19 2 0 93 chain 55533 chrX 156040895 + 45108518 45109128 L1PA2 6032 + 5418 6026 27708 601 2 0 7 chain 40933 chrX 156040895 + 45123920 45124402 L1PA7 6471 + 5982 6467 34008 5 0 3 477 chain 21950 chrX 156040895 + 45125958 45126216 L1PBa 3878 + 1166 1424 53903 258 chain 3853 chrX 156040895 + 45140540 45140587 MER57B2 428 + 0 47 92487 47 chain 23786 chrX 156040895 + 45164458 45164765 L1PA7 6471 + 6162 6461 51131 50 2 1 84 8 1 163 chain 244273 chrX 156040895 + 45215760 45219561 L1PA13 3608 + 113 3549 8371 23 32 44 17 42 31 15 3 5 41 12 10 102 39 37 7 2 0 16 6 2 18 1 0 17 2 0 18 2 0 16 1 0 99 2 0 307 317 0 25 0 1 71 3 4 8 11 0 71 8 9 18 1 0 106 0 1 676 12 7 12 7 3 11 5 9 832 1 0 130 0 8 24 1 0 5 0 1 158 1 0 32 1 0 113 2 0 62 1 0 61 2 0 48 8 4 18 1 0 35 36 24 10 4 1 13 chain 20432 chrX 156040895 + 45254383 45254641 L1PA8 5853 + 5601 5853 55853 7 2 0 71 1 0 10 1 0 51 2 1 19 1 0 93 chain 77226 chrX 156040895 + 45337624 45340345 L1PA13 3608 + 716 3438 22259 150 3 0 48 0 2 131 0 4 33 2 1 21 3 1 6 1 0 178 1 7 129 0 1 10 4 3 68 53 58 196 1503 1501 9 2 0 62 1 0 27 15 23 6 1 0 5 2 0 26 12 3 13 chain 60751 chrX 156040895 + 45461941 45462892 L1PB3 3668 + 2694 3614 26164 65 7 0 124 0 4 76 0 2 16 8 6 19 23 24 251 1 2 8 1 0 100 1 0 87 20 4 21 2 0 25 3 1 33 11 7 12 3 2 11 8 5 15 chain 22265 chrX 156040895 + 45466449 45466703 L1PA6 6164 + 5905 6159 53457 254 chain 22973 chrX 156040895 + 45488656 45489088 L1MA5 2750 + 2155 2587 52398 197 119 120 57 0 1 34 1 0 5 1 0 18 chain 19461 chrX 156040895 + 45511998 45512246 L1PA8 5853 + 5609 5853 57081 69 2 1 11 1 0 4 0 1 6 1 0 39 2 1 19 1 0 93 chain 5397 chrX 156040895 + 45544088 45544157 THE1D-int 1627 + 14 82 83721 23 1 0 45 chain 16206 chrX 156040895 + 45562611 45562934 Tigger3a 397 + 14 397 60740 27 49 98 22 7 17 143 33 34 42 chain 46772 chrX 156040895 + 45589680 45590174 L1HS 6032 + 5538 6032 30739 494 chain 10684 chrX 156040895 + 45615479 45615666 LTR12 884 + 171 399 69074 25 1 26 73 30 48 38 2 0 18 chain 25643 chrX 156040895 + 45634721 45635095 THE1A 353 + 0 353 48254 81 3 4 24 7 4 209 23 4 27 chain 34821 chrX 156040895 + 45639016 45639419 L1PA6 6164 + 5754 6156 38142 88 2 1 313 chain 34033 chrX 156040895 + 45657003 45657435 THE1B-int 1605 + 0 432 38684 107 3 0 6 7 10 309 chain 78151 chrX 156040895 + 45657436 45658301 L1PA3long 6157 + 5291 6157 22059 187 5 6 673 chain 40915 chrX 156040895 + 45659833 45660560 L1PB1 5432 + 4716 5404 34021 86 19 16 278 7 4 14 3 0 24 1 0 5 2 1 11 24 18 47 2 1 15 1 0 45 1 0 15 67 50 24 1 0 22 1 0 12 chain 3349 chrX 156040895 + 45690775 45690813 L1PA13 3608 + 2127 2165 96607 38 chain 26055 chrX 156040895 + 45703915 45704224 AluYk4 311 + 0 305 47651 126 1 0 161 3 0 18 chain 12085 chrX 156040895 + 45725102 45725293 L1PA16 3655 + 3220 3410 66697 4 0 1 23 7 0 5 0 7 35 12 10 105 chain 54386 chrX 156040895 + 45733795 45734507 THE1D-int 1627 + 0 722 28090 38 1 0 481 0 1 8 0 1 48 9 11 55 3 10 69 chain 45269 chrX 156040895 + 45813425 45813984 L1PA8 5853 + 4633 5188 31437 249 1 0 128 2 0 84 2 1 93 chain 16397 chrX 156040895 + 45814288 45814486 L1PA8A 6298 + 5668 5866 60525 198 chain 17241 chrX 156040895 + 45834030 45834338 MER47A 366 + 0 316 59540 10 0 10 43 50 51 75 1 0 29 5 4 79 1 0 15 chain 8689 chrX 156040895 + 45835780 45835944 L1MA3 4352 + 4169 4327 73235 6 0 4 78 10 3 22 1 0 5 12 11 16 1 0 13 chain 8111 chrX 156040895 + 45895254 45895356 MER30 238 + 138 237 74614 60 3 0 39 chain 3885 chrX 156040895 + 45919485 45919530 MADE1 96 + 1 46 92253 45 chain 5175 chrX 156040895 + 45924973 45925089 Tigger1 2417 + 2303 2416 84797 38 11 12 10 4 5 20 10 5 23 chain 78747 chrX 156040895 + 45975931 45977061 L1PB1 5432 + 4316 5409 21932 297 11 8 413 19 19 50 1 2 9 5 0 24 1 0 9 16 11 11 7 5 46 2 1 16 1 0 43 1 0 16 3 0 15 8 0 16 8 5 14 2 0 24 1 0 21 1 0 13 1 0 5 chain 30762 chrX 156040895 + 45982884 45983312 L1PA16 3655 + 3141 3570 41340 62 1 0 4 0 2 5 15 16 20 1 0 4 0 1 35 2 0 207 0 1 72 chain 312516 chrX 156040895 + 46020745 46025254 L1PB1 5432 + 986 5424 6560 253 1 0 154 1 0 9 2 0 5 25 11 184 0 1 11 0 1 84 10 3 57 0 1 10 8 1 328 0 2 439 1 0 24 0 3 27 314 25 147 0 1 57 10 10 300 1 9 335 0 6 248 3 0 84 0 3 43 0 1 157 0 240 305 4 5 56 3 0 273 0 2 198 5 6 9 3 0 24 38 43 39 1 2 4 2 0 11 1 0 42 34 29 19 8 5 14 2 0 24 1 0 20 2 1 13 1 0 16 1 0 4 chain 71571 chrX 156040895 + 46061073 46061964 L1PA8 5853 + 4957 5853 23641 53 2 0 127 0 1 81 0 2 343 1 0 44 2 0 80 1 0 13 0 10 29 2 1 19 4 3 90 chain 4979 chrX 156040895 + 46086721 46086784 L1MC1 2226 + 1726 1789 85752 63 chain 540186 chrX 156040895 + 46086824 46093271 L1PA7 6471 + 1 6470 1328 134 5 0 270 8 0 35 5 20 570 0 2 329 1 0 11 1 0 6 1 2 178 1 0 135 0 1 246 1 2 93 1 0 33 0 6 557 1 3 72 3 7 561 2 3 226 1 0 982 1 2 1127 0 3 195 0 2 501 0 1 154 chain 4077 chrX 156040895 + 46097394 46097440 MLT2A2 560 + 514 560 90912 46 chain 461943 chrX 156040895 + 46103870 46109211 L1PA4 6152 + 10 5357 4079 92 24 24 2194 4 1 1976 0 1 24 3 0 641 0 13 329 2 0 52 chain 32592 chrX 156040895 + 46134402 46134811 L1PA8 5853 + 5442 5853 39871 122 1 0 45 2 0 41 0 8 21 1 0 61 2 1 19 1 0 93 chain 82037 chrX 156040895 + 46142937 46144252 L1MA1 4479 + 2897 4172 21233 19 24 24 17 3 1 9 28 25 165 2 0 18 4 0 76 1 0 4 13 8 43 11 6 77 3 0 93 1 0 36 2 0 163 16 16 16 2 1 21 2 0 20 1 0 71 1 0 19 2 0 14 1 0 88 1 0 5 2 0 46 0 10 70 1 0 5 2 1 22 2 0 36 1 0 9 1 0 4 6 1 16 chain 5991 chrX 156040895 + 46157391 46157517 MER5A 189 + 13 163 81119 5 2 0 53 38 64 28 chain 4268 chrX 156040895 + 46181624 46181672 L1MA6 2487 + 2162 2210 89713 48 chain 74389 chrX 156040895 + 46186894 46187797 HERV17-int 4347 + 1772 4347 22987 164 1 0 50 1 0 5 0 1 68 0 1672 13 6 7 181 1 0 4 0 1 409 chain 23251 chrX 156040895 + 46189249 46189578 LTR17 781 + 0 326 52004 56 1 0 89 12 11 23 1 0 57 1 0 46 0 1 43 chain 3479 chrX 156040895 + 46207518 46207737 LTR16A 446 + 202 420 95385 37 164 163 18 chain 9032 chrX 156040895 + 46232949 46233098 L1MA4A 3247 + 3022 3165 72495 73 0 1 11 1 0 24 23 17 17 chain 30207 chrX 156040895 + 46245069 46245445 THE1C 375 + 0 375 41844 348 2 1 26 chain 30933 chrX 156040895 + 46247918 46248256 L1PA4 6152 + 5814 6152 41186 338 chain 17941 chrX 156040895 + 46252099 46252447 MSTA 426 + 0 392 58709 10 0 1 89 1 0 8 15 39 10 1 5 43 5 1 6 0 4 11 40 38 22 2 0 9 1 21 75 chain 5829 chrX 156040895 + 46256958 46257027 LTR56 451 + 18 87 81786 69 chain 37379 chrX 156040895 + 46273635 46274122 LTR10F 562 + 0 562 36495 33 0 4 66 0 56 73 0 3 21 7 0 10 5 11 90 0 13 182 chain 165839 chrX 156040895 + 46274737 46276662 SVA_F 1814 + 0 1814 11345 930 16 32 186 127 0 666 chain 7476 chrX 156040895 + 46275869 46275986 SVA_F 1814 + 1021 1089 68170 9 49 0 59 chain 2196 chrX 156040895 + 46275878 46275925 SVA_F 1814 + 867 915 73879 16 1 2 30 chain 23823 chrX 156040895 + 46286218 46286558 THE1C 375 + 0 347 51066 40 0 5 97 0 4 35 5 6 41 18 14 51 0 1 53 chain 28464 chrX 156040895 + 46305112 46305454 L1PA7 6471 + 6117 6468 44176 307 0 9 35 chain 9651 chrX 156040895 + 46329299 46329475 MLT1C 463 + 17 181 71159 70 18 21 16 15 1 9 1 0 47 chain 341757 chrX 156040895 + 46333988 46339605 L1PB1 5432 + 832 5424 6031 301 0 1 261 1 0 7 8 0 33 6 0 9 22 17 124 2 0 230 68 16 13 0 4 640 348 19 21 0 1 258 0 2 927 5 11 342 1 2 557 310 1 52 319 0 22 0 2 99 12 50 74 0 3 54 6 23 5 0 2 88 53 11 20 1 0 13 16 11 9 2 0 40 3 2 11 2 1 17 1 0 43 1 0 8 58 43 14 2 0 24 1 0 22 0 3 9 1 0 16 1 0 4 chain 5191 chrX 156040895 + 46442887 46442973 MER5A1 166 + 39 126 84723 43 13 14 30 chain 10511 chrX 156040895 + 46454849 46454973 MER30 238 + 114 238 69395 124 chain 22289 chrX 156040895 + 46460148 46460431 AluSp 311 + 6 296 53422 13 1 6 104 1 3 164 chain 30221 chrX 156040895 + 46478848 46479523 THE1C-int 1605 + 45 411 41829 31 0 4 264 317 4 63 chain 72060 chrX 156040895 + 46492216 46493075 L1PA8A 6298 + 5400 6290 23523 94 0 5 175 0 1 503 0 17 20 0 8 67 chain 126192 chrX 156040895 + 46508926 46510297 L1PA3long 6157 + 4784 6157 14525 1366 0 2 5 chain 5923 chrX 156040895 + 46517778 46517850 U6 107 + 17 89 81382 72 chain 3089 chrX 156040895 + 46654902 46654936 MER33 330 + 53 87 98872 34 chain 547234 chrX 156040895 + 46655357 46661382 L1PA3long 6157 + 0 6157 906 5 2 0 125 33 34 612 0 128 1647 0 1 1392 0 1 759 0 4 1116 1 0 333 chain 9043 chrX 156040895 + 46668538 46668672 L1MB2 1706 + 1367 1500 72465 5 2 0 28 4 5 95 chain 5054 chrX 156040895 + 46697190 46697326 L1MA8 2339 + 2130 2262 85391 27 2 3 33 44 40 24 1 0 5 chain 79700 chrX 156040895 + 46697374 46698421 MER11C 1089 + 0 1064 21694 246 0 9 62 0 4 212 50 50 107 1 5 4 1 0 34 4 5 127 0 1 50 1 0 148 chain 152443 chrX 156040895 + 46717727 46719451 L1PA5 6144 + 4414 6141 12204 174 1 0 683 1 2 443 0 2 92 0 1 330 chain 5378 chrX 156040895 + 46766879 46766992 L1ME1 1623 + 1376 1484 83806 42 40 35 31 chain 12118 chrX 156040895 + 46776387 46777635 MER41B 635 + 0 635 66640 81 1 11 11 1060 437 95 chain 10875 chrX 156040895 + 46785477 46785709 L1MC1 2226 + 1756 1981 68735 88 6 0 9 73 73 4 1 0 51 chain 127715 chrX 156040895 + 46820501 46822689 L1M1 2793 + 543 2685 14325 11 2 0 7 3 0 9 2 1 8 4 3 8 3 0 12 37 16 17 92 38 24 102 78 27 1 0 29 11 8 54 5 3 5 1 0 70 4 56 15 0 2 138 1 0 57 0 11 19 4 0 6 11 8 246 20 24 111 5 0 100 9 8 106 7 0 21 0 7 112 0 1 82 1 4 15 0 4 5 0 2 71 16 17 58 2 1 19 6 0 7 0 9 76 0 1 43 1 0 112 2 1 5 0 1 64 1 5 7 1 0 43 1 0 14 chain 3399 chrX 156040895 + 46842297 46842335 L1MA4 2864 + 2766 2804 96069 38 chain 5761 chrX 156040895 + 46876458 46876551 MER2B 336 + 200 312 82082 52 6 0 18 5 30 12 chain 28019 chrX 156040895 + 46878092 46878396 AluYa5 310 + 0 301 44833 132 3 0 169 chain 3458 chrX 156040895 + 46921508 46921547 MER68B 564 + 0 39 95560 39 chain 6942 chrX 156040895 + 46972097 46972186 MER58B 340 + 71 160 77802 89 chain 76266 chrX 156040895 + 47036299 47037120 L1PA2 6032 + 5210 6030 22495 147 1 0 673 chain 33588 chrX 156040895 + 47040247 47040727 MER1A 529 + 0 529 39009 15 18 22 38 20 60 318 8 13 63 chain 69735 chrX 156040895 + 47072640 47073406 L1PA2 6032 + 5263 6032 24057 751 1 4 14 chain 25697 chrX 156040895 + 47159508 47159855 L1P4 1494 + 819 1191 48177 163 2 0 6 0 2 68 0 3 75 1 23 32 chain 4053 chrX 156040895 + 47257191 47257235 MER50 708 + 641 685 91063 44 chain 12996 chrX 156040895 + 47267013 47267209 MER30 238 + 25 235 65118 70 20 37 67 3 0 36 chain 23314 chrX 156040895 + 47390452 47390716 AluSp 311 + 29 293 51908 264 chain 6336 chrX 156040895 + 47430734 47430811 MSTA 426 + 337 414 79879 77 chain 29563 chrX 156040895 + 47469030 47469339 AluYa5 310 + 1 310 42533 309 chain 3878 chrX 156040895 + 47538004 47538052 L1MC4 1079 + 286 334 92301 48 chain 13179 chrX 156040895 + 47538702 47539050 MSTA 426 + 27 413 64811 73 14 32 33 115 117 14 4 25 12 1 0 4 5 3 73 chain 4859 chrX 156040895 + 47577264 47577341 MADE1 96 - 0 96 86376 35 6 25 36 chain 8360 chrX 156040895 + 47629173 47629284 MER20 218 + 0 110 73998 82 1 0 28 chain 58594 chrX 156040895 + 47673684 47674373 L1PA8A 6298 + 5017 5712 26788 298 4 10 387 chain 48652 chrX 156040895 + 47675915 47676479 LTR19B 566 + 0 564 30068 118 1 0 332 0 1 113 chain 21884 chrX 156040895 + 47676490 47676859 THE1D 372 + 16 372 53994 4 1 0 31 9 0 23 3 0 6 7 6 80 32 34 19 6 5 148 chain 3376 chrX 156040895 + 47702676 47702716 LTR64 526 + 486 526 96329 40 chain 34837 chrX 156040895 + 47712689 47713135 LTR19B 566 + 9 440 38129 285 24 7 81 0 2 56 chain 208427 chrX 156040895 + 47713138 47715609 L1PA8 5853 + 3382 5853 9403 320 0 2 378 0 1 745 1 0 182 2 0 74 0 2 124 0 2 86 0 1 309 2 0 12 0 1 57 2 1 9 1 0 52 2 1 19 1 0 93 chain 19158 chrX 156040895 + 47738491 47738696 L1P1 4361 + 1663 1868 57390 205 chain 41253 chrX 156040895 + 47738926 47739397 L1PA7 6471 + 5999 6470 33818 471 chain 3467 chrX 156040895 + 47751125 47751164 MER41D 557 + 395 434 95484 39 chain 29086 chrX 156040895 + 47763648 47764036 L1P4 1494 + 531 921 43211 18 6 6 48 0 3 178 1 0 137 chain 42286 chrX 156040895 + 47769459 47770056 L1PREC2 3366 + 697 3048 33203 200 0 1 274 12 11 7 0 1 22 3 1758 35 8 6 36 chain 6161 chrX 156040895 + 47774970 47775051 L1MA4 2864 + 2504 2587 80480 15 0 2 66 chain 371647 chrX 156040895 + 47781824 47792215 L1P1 4361 + 1 4341 5625 573 1 0 120 14 0 1131 6033 0 2325 1 0 155 1 0 23 2 1 12 chain 5248 chrX 156040895 + 47848635 47848769 Tigger4a 237 - 0 236 84459 22 0 93 22 52 61 38 chain 28820 chrX 156040895 + 47881071 47881471 MER83 447 + 0 435 43594 51 0 1 91 30 64 228 chain 7777 chrX 156040895 + 47883838 47883954 MLT1F2 592 + 47 162 75422 23 12 11 81 chain 211078 chrX 156040895 + 47902908 47905223 L1PA4 6152 + 3837 6151 9315 1284 3 0 67 0 2 961 chain 38677 chrX 156040895 + 47936501 47937070 LTR19B 566 + 0 566 35584 115 1 0 41 41 19 46 0 1 74 3 0 5 20 0 134 0 41 12 3 4 74 chain 34547 chrX 156040895 + 47964974 47966245 MSTB-int 1649 + 0 505 38323 143 5 1 40 27 0 4 10 0 172 742 0 32 16 34 28 1 0 51 chain 3477 chrX 156040895 + 47965601 47965645 SVA_F 1814 + 1242 1289 95395 29 0 3 15 chain 3575 chrX 156040895 + 47984854 47984894 L1ME1 1623 + 1043 1083 94620 40 chain 70749 chrX 156040895 + 47985709 47986591 HERVL-int 5654 + 4773 5654 23816 830 1 0 51 chain 41029 chrX 156040895 + 47986595 47987130 MLT2A2 560 + 4 560 33952 195 0 3 5 11 8 5 0 1 109 0 9 67 0 11 143 chain 4457 chrX 156040895 + 48007547 48007630 MSTD 398 + 0 81 88572 19 22 20 42 chain 132955 chrX 156040895 + 48016327 48017858 SVA_B 1603 + 44 1603 13743 798 0 36 13 2 0 42 31 29 14 1 0 621 3 0 6 chain 33483 chrX 156040895 + 48037940 48038372 L1PA8 5853 + 5426 5853 39101 15 0 1 122 1 0 46 2 0 69 1 0 9 2 1 51 2 1 19 1 0 39 0 1 53 chain 13216 chrX 156040895 + 48076906 48077095 MLT1A 405 + 218 405 64750 69 10 9 41 1 0 68 chain 81576 chrX 156040895 + 48077746 48078802 MER11C 1089 + 0 1073 21319 246 0 9 62 0 4 65 1 0 146 47 46 91 0 1 20 0 4 5 1 0 38 0 1 324 0 1 10 chain 158066 chrX 156040895 + 48114625 48116363 SVA_D 2077 + 24 2077 11872 6 6 0 808 0 223 242 0 98 676 chain 4457 chrX 156040895 + 48130432 48130515 MSTD 398 + 0 81 88571 19 22 20 42 chain 127586 chrX 156040895 + 48138592 48140085 SVA_B 1603 + 44 1603 14344 621 8 85 84 48 0 4 0 40 98 1 0 621 2 0 6 chain 42506 chrX 156040895 + 48219936 48220451 MER9a1 513 + 2 513 33059 483 4 0 28 chain 130118 chrX 156040895 + 48221746 48223217 SVA_D 2077 + 0 2075 14025 15 9 1 526 0 40 136 8 45 115 0 535 662 chain 3885 chrX 156040895 + 48223451 48223494 5S 121 + 0 43 92251 43 chain 3443 chrX 156040895 + 48230767 48230804 MER4E1 777 + 663 700 95712 37 chain 33220 chrX 156040895 + 48233198 48233550 L1HS 6032 + 4819 5171 39330 352 chain 71308 chrX 156040895 + 48233550 48234500 MER11C 1089 + 63 1052 23692 201 9 12 23 4 32 231 36 37 176 5 13 140 2 1 123 chain 2883 chrX 156040895 + 48378786 48378821 L1MD2 1676 + 1388 1423 100976 35 chain 40655 chrX 156040895 + 48382503 48382948 L1PA3long 6157 + 5707 6152 34185 445 chain 3989 chrX 156040895 + 48427789 48427961 MER31A 484 + 242 414 91527 19 113 113 40 chain 508292 chrX 156040895 + 48433480 48439327 L1PA5 6144 + 0 6143 2833 47 11 23 43 7 21 996 0 4 35 9 0 721 3 2 3345 0 278 617 3 1 10 chain 13270 chrX 156040895 + 48542980 48543168 MER44A 345 + 147 345 64680 21 1 16 63 2 0 54 3 0 44 chain 9982 chrX 156040895 + 48591848 48591991 L1PA8 5853 + 5712 5853 70459 28 2 1 19 6 5 88 chain 19588 chrX 156040895 + 48639203 48640163 L1MB1 2102 + 117 445 56912 40 9 7 129 657 31 53 4 0 53 1 2 5 1 0 8 chain 5278 chrX 156040895 + 48642371 48642436 MER66C 541 + 370 435 84295 65 chain 64578 chrX 156040895 + 48654524 48655276 LTR17 781 + 0 773 25294 71 1 0 256 1 0 296 0 1 91 1 23 35 chain 12378 chrX 156040895 + 48679818 48679970 MER41B 635 + 481 635 66185 26 0 1 98 0 1 28 chain 41593 chrX 156040895 + 48680321 48680870 MER41B 635 + 0 549 33628 78 9 0 50 0 1 179 0 8 135 16 15 45 0 1 37 chain 15679 chrX 156040895 + 48731411 48731614 MER30 238 + 0 219 61424 106 5 20 38 1 2 53 chain 5743 chrX 156040895 + 48757752 48757820 ERVL-B4-int 2334 + 323 391 82166 68 chain 7545 chrX 156040895 + 48780304 48780408 L1MB7 1623 + 994 1097 76009 42 2 1 60 chain 37365 chrX 156040895 + 48853723 48854172 LTR2 463 + 0 463 36508 98 1 12 19 0 3 331 chain 435931 chrX 156040895 + 48855963 48861338 Harlequin-int 5206 + 135 5206 4645 9 11 0 149 5 0 7 1 0 183 2 0 199 1 0 61 297 0 101 0 1 213 6 0 1523 2 0 28 0 20 2577 chain 37455 chrX 156040895 + 48861338 48861796 LTR2 463 + 0 463 36436 127 0 3 16 1 2 120 0 1 194 chain 419367 chrX 156040895 + 48869109 48874138 L1PA4 6152 + 1431 6152 4885 384 0 2 6 2 0 26 323 0 285 0 2 1803 1 11 273 2 1 97 0 1 32 0 4 958 2 0 692 13 14 130 chain 21324 chrX 156040895 + 48875352 48875638 HSMAR2 1300 + 52 336 54731 161 0 1 40 2 0 40 1 0 42 chain 4998 chrX 156040895 + 49007061 49007149 L1MC4 1079 + 324 407 85672 13 10 0 6 1 6 58 chain 26855 chrX 156040895 + 49016297 49016600 AluSp 311 + 0 306 46462 91 0 3 212 chain 23652 chrX 156040895 + 49030807 49031088 AluSp 311 + 0 287 51350 30 0 5 97 1 0 131 0 2 22 chain 3923 chrX 156040895 + 49108915 49108959 MLT1B 390 + 300 344 91965 44 chain 4334 chrX 156040895 + 49139503 49139557 LTR42 492 + 357 411 89272 54 chain 9795 chrX 156040895 + 49144443 49144564 HERVE-int 4064 + 1118 1239 70836 121 chain 16284 chrX 156040895 + 49155655 49155850 L1PA5 6144 + 5955 6143 60641 180 7 0 8 chain 37468 chrX 156040895 + 49307779 49308255 LTR15 485 + 0 478 36426 107 0 1 17 4 0 25 0 2 129 0 4 42 0 1 109 1 0 5 2 0 14 0 1 21 chain 34492 chrX 156040895 + 49316052 49316524 LTR15 485 + 0 478 38359 107 0 1 17 4 0 24 0 2 23 0 2 98 1 5 44 0 1 16 5 6 60 0 1 30 1 0 5 2 0 16 0 1 19 chain 53517 chrX 156040895 + 49716296 49716980 LTR17 781 + 0 728 28392 327 1 0 59 0 1 85 4 1 47 2 1 10 1 0 25 0 49 123 chain 43225 chrX 156040895 + 49717336 49717984 L1PB2 3958 + 3211 3838 32629 23 0 2 73 2 0 53 28 17 60 2 0 12 7 0 94 1 0 32 6 8 32 1 0 11 3 4 49 2 1 93 1 0 63 chain 3112 chrX 156040895 + 49727513 49727548 MER52D 1964 + 1224 1259 98676 35 chain 152586 chrX 156040895 + 49779288 49781467 L1PA3long 6157 + 3980 6142 12196 326 17 0 1836 chain 5042 chrX 156040895 + 49785208 49785266 MER77B 728 + 306 364 85460 58 chain 4491 chrX 156040895 + 49801110 49801177 L1MA8 2339 + 2198 2262 88382 35 2 0 23 1 0 6 chain 46169 chrX 156040895 + 49814960 49815467 L1PA3long 6157 + 4642 5149 30977 507 chain 21317 chrX 156040895 + 49874808 49875148 MER1B 344 + 0 338 54742 16 9 29 228 5 0 6 26 10 5 0 2 26 3 0 16 chain 23015 chrX 156040895 + 49896907 49897293 THE1D 372 + 0 372 52334 45 28 0 27 0 10 106 23 21 13 0 1 15 5 11 83 6 5 35 chain 109207 chrX 156040895 + 49897309 49898787 THE1D-int 1627 + 12 1627 17153 16 0 1 352 7 0 339 1 0 21 38 45 64 10 95 222 14 53 25 2 0 107 0 7 123 1 6 103 0 3 33 chain 20978 chrX 156040895 + 49927656 49927974 L1MA4 2864 + 2344 2663 55152 26 6 8 96 26 25 21 0 1 122 1 0 20 chain 2970 chrX 156040895 + 49931113 49931150 MER5B 177 - 135 172 100195 37 chain 82915 chrX 156040895 + 49938847 49939781 L1PA5 6144 + 5190 6126 21040 101 0 3 701 1 0 131 chain 138229 chrX 156040895 + 49967495 49968964 L1HS 6032 + 3696 5165 13242 1469 chain 5033 chrX 156040895 + 49975979 49976058 MER20 218 + 93 171 85495 26 11 10 42 chain 59937 chrX 156040895 + 50033113 50033766 L1PA3long 6157 + 4090 4743 26393 653 chain 558172 chrX 156040895 + 50060143 50066175 L1PA2 6032 + 0 6032 237 6032 chain 45023 chrX 156040895 + 50109052 50109619 MER4B 649 + 0 575 31568 192 2 0 173 1 10 128 0 1 71 chain 62002 chrX 156040895 + 50130484 50131169 L1PA4 6152 + 5454 6139 25868 685 chain 20092 chrX 156040895 + 50149084 50149303 L1PA5 6144 + 5923 6142 56264 219 chain 29885 chrX 156040895 + 50149851 50150300 MLT2A1 477 + 0 477 42146 142 0 1 25 1 5 26 0 1 124 1 0 33 12 16 9 4 0 10 19 39 5 0 3 38 chain 5071 chrX 156040895 + 50152031 50152096 MLT1E3 631 + 565 631 85305 59 0 1 6 chain 63840 chrX 156040895 + 50175510 50176206 L1PA2 6032 + 5334 6029 25445 678 1 0 17 chain 37956 chrX 156040895 + 50287762 50288273 MER1A 529 + 3 529 36104 77 13 17 303 0 8 43 12 15 63 chain 101523 chrX 156040895 + 50304355 50305482 L1PA4 6152 + 4842 5968 18124 316 1 0 810 chain 49694 chrX 156040895 + 50322808 50323350 L1PA4 6152 + 5380 5922 29689 542 chain 19529 chrX 156040895 + 50323350 50323568 L1PA4 6152 + 5924 6143 56989 114 0 1 104 chain 17276 chrX 156040895 + 50343009 50343416 Tigger3b 1229 + 303 568 59487 13 2 5 7 4 0 33 0 1 37 1 4 133 147 2 30 chain 23924 chrX 156040895 + 50429420 50429686 AluY 311 + 17 280 50905 116 3 0 147 chain 26494 chrX 156040895 + 50522297 50522711 MSTA 426 + 2 424 46987 86 20 25 14 30 36 47 2 0 99 1 0 115 chain 405841 chrX 156040895 + 50558345 50563830 L1PB1 5432 + 58 5391 5071 45 23 25 20 2 15 78 0 7 5 1 0 506 1 0 636 1 0 6 3 0 4 9 0 98 131 0 258 0 2 106 0 1 56 5 9 397 0 1 22 1 0 139 7 0 268 0 1 80 1 0 73 1 0 27 14 11 709 0 6 52 1 3 194 0 1 43 0 1 663 3 0 102 0 4 101 0 1 269 5 0 12 7 0 10 10 9 13 16 11 9 2 0 62 9 8 43 1 0 16 3 0 7 14 5 19 25 23 20 1 0 5 0 1 15 chain 7755 chrX 156040895 + 50570976 50571064 L1P4 1494 + 1071 1158 75474 35 1 0 52 chain 34120 chrX 156040895 + 50571495 50571889 L1PA7 6471 + 6076 6470 38619 394 chain 4231 chrX 156040895 + 50651480 50651577 MER5A 189 + 32 130 89936 27 39 40 31 chain 35230 chrX 156040895 + 50682783 50683235 MLT2A1 477 + 0 477 37880 142 0 1 26 1 5 211 4 0 8 10 34 50 chain 18340 chrX 156040895 + 50688266 50688619 L1MA5A 2387 + 1919 2254 58312 18 3 4 19 39 44 29 1 0 65 0 9 48 2 0 64 3 0 9 31 4 22 chain 6643 chrX 156040895 + 50709797 50709948 MER5A 189 + 0 163 78833 66 47 56 19 1 4 18 chain 38686 chrX 156040895 + 50723679 50724200 HERVH-int 3825 + 2101 2648 35573 268 36 49 160 1 14 56 chain 22996 chrX 156040895 + 50725452 50725810 THE1D 372 + 0 372 52368 145 65 79 148 chain 114715 chrX 156040895 + 50725825 50727416 THE1D-int 1627 + 14 1616 16428 24 1 0 72 0 1 69 9 5 40 0 1 70 0 2 35 1 3 80 6 7 248 5 6 22 0 3 136 64 67 70 10 11 156 2 1 103 4 6 222 3 4 4 1 0 134 chain 230525 chrX 156040895 + 50737603 50740160 L1PA4 6152 + 3413 5969 8733 1216 1 0 1340 chain 18057 chrX 156040895 + 50788419 50788625 AluYc3 301 + 83 289 58602 206 chain 42899 chrX 156040895 + 50820677 50821793 L1MA4 2864 + 1892 2643 32836 113 71 33 25 0 3 29 1 0 22 1 0 45 5 0 28 10 23 22 2 0 99 3 0 7 28 29 127 359 25 102 4 6 13 chain 10022 chrX 156040895 + 50830349 50830470 MER85 139 + 8 139 70370 82 0 10 39 chain 4750 chrX 156040895 + 50832743 50832802 MLT1A0 366 + 301 361 86965 37 0 1 22 chain 13020 chrX 156040895 + 50840892 50841078 MER30 238 + 38 237 65088 57 5 26 6 5 0 71 3 0 39 chain 56130 chrX 156040895 + 50847889 50848512 L1PA5 6144 + 5516 6140 27524 478 1 2 144 chain 18151 chrX 156040895 + 50893564 50893859 L1MA1 4479 + 3888 4172 58507 58 1 0 6 8 5 121 1 0 10 0 1 16 2 0 37 1 0 5 13 9 16 chain 2975 chrX 156040895 + 50903095 50903130 MADE1 96 + 3 38 100101 35 chain 4246 chrX 156040895 + 50908461 50908565 Tigger2b_Pri 1066 + 970 1066 89846 24 0 2 6 41 31 33 chain 66781 chrX 156040895 + 50957163 50957941 L1PA6 6164 + 5384 6162 24751 618 15 15 145 chain 261325 chrX 156040895 + 50980002 50983980 MER61-int 3695 + 1 3695 7931 29 4 0 20 1 0 148 39 0 74 1 0 42 21 18 27 10 14 25 2 1 12 34 20 111 0 4 92 0 96 112 0 5 56 14 19 77 2 1 127 0 2 4 1 0 108 0 1 53 26 0 142 2 0 80 1 0 17 7 5 50 0 1 17 0 1 7 0 5 321 0 2 23 317 0 161 1 0 36 2 0 98 0 1 154 0 1 194 5 0 93 6 5 52 1 0 66 0 1 14 63 53 211 0 1 4 1 0 30 0 1 4 3 1 30 1 3 127 1 0 4 0 20 11 2 0 211 6 7 41 2 3 87 chain 3791 chrX 156040895 + 51001217 51001503 MLT2B3 573 + 291 567 92914 26 214 210 22 6 0 18 chain 431091 chrX 156040895 + 51113128 51117875 L1PA3long 6157 + 1408 6157 4738 459 0 1 2851 0 1 1437 chain 241308 chrX 156040895 + 51124934 51127857 L1P3 4156 + 3 2938 8444 234 30 29 54 1 0 74 5 8 236 0 2 587 0 8 1389 18 19 295 chain 44803 chrX 156040895 + 51170911 51171435 L1PA7 6471 + 5935 6460 31698 418 4 5 102 chain 22790 chrX 156040895 + 51174859 51175152 L1PA8 5853 + 5565 5853 52687 42 3 1 73 1 0 59 2 1 19 1 0 93 chain 106287 chrX 156040895 + 51203249 51204411 L1PA3long 6157 + 4994 6156 17525 1162 chain 105697 chrX 156040895 + 51206208 51207766 THE1B-int 1605 + 0 1599 17598 13 4 5 94 51 0 161 0 6 118 0 64 11 3 9 180 72 73 21 7 1 25 1 18 497 18 15 92 11 12 86 0 5 93 chain 55663 chrX 156040895 + 51213512 51214124 L1PA4 6152 + 5534 6146 27674 612 chain 32359 chrX 156040895 + 51220581 51220964 L1PA7 6471 + 6087 6468 40069 220 1 3 151 4 0 7 chain 72633 chrX 156040895 + 51227783 51228571 L1PA4 6152 + 5353 6141 23390 788 chain 255107 chrX 156040895 + 51246465 51249282 L1PA3long 6157 + 3336 6152 8110 1971 1 0 845 chain 544567 chrX 156040895 + 51262091 51268158 L1PA3long 6157 + 71 6157 1050 373 0 20 431 8 0 68 0 1 225 0 3 1534 4 2 2582 0 4 257 0 1 585 chain 135356 chrX 156040895 + 51279255 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chain 70757 chrX 156040895 + 51479196 51480081 LTR12 884 + 0 884 23815 25 1 0 72 26 1 133 0 4 30 0 1 88 0 22 291 1 0 169 1 0 48 chain 10940 chrX 156040895 + 51483211 51483333 LTR12_ 688 + 566 688 68633 122 chain 91128 chrX 156040895 + 51497806 51498794 L1PA3long 6157 + 5003 5991 19477 988 chain 71987 chrX 156040895 + 51510009 51510843 L1P2 5180 + 1942 2779 23541 375 3 2 71 0 4 385 chain 124868 chrX 156040895 + 51540695 51542119 L1PA5 6144 + 4438 5878 14728 657 0 15 208 1 2 558 chain 388295 chrX 156040895 + 51576976 51581764 L1PA8A 6298 + 1505 6290 5345 348 1 0 84 6 5 95 1 4 347 0 4 118 28 4 236 0 1 65 0 1 147 0 9 418 1 0 6 0 1 43 0 4 259 0 1 136 0 1 29 0 1 979 6 7 550 0 1 4 2 1 75 0 2 77 0 2 75 32 23 445 0 1 42 0 1 133 chain 535574 chrX 156040895 + 51623141 51629261 L1PA5 6144 + 3 6142 1588 62 1 0 4 0 1 1372 11 5 252 0 1 689 0 19 1925 0 1 1577 0 4 227 chain 47657 chrX 156040895 + 51636506 51637062 LTR14 556 + 0 556 30418 556 chain 537180 chrX 156040895 + 51644760 51650766 L1PA3long 6157 + 0 6156 1501 152 10 11 155 0 1 164 1 2 296 0 128 546 0 3 2304 0 6 618 0 1 257 0 5 847 0 3 503 0 1 153 chain 11675 chrX 156040895 + 51662475 51662743 L1MC2 1988 + 1577 1844 67436 84 54 53 18 44 44 68 chain 6012 chrX 156040895 + 51717674 51718194 L1MB8 1703 + 1015 1537 81029 57 420 419 8 0 3 35 chain 25357 chrX 156040895 + 51778004 51778378 MER4E 760 + 364 741 48692 11 1 15 17 1 0 5 1 0 26 7 6 29 1 0 60 15 8 200 chain 7234 chrX 156040895 + 51827286 51827546 L1MC1 2226 + 1967 2195 76845 13 3 0 14 2 0 49 52 40 14 76 62 26 1 0 10 chain 3709 chrX 156040895 + 51844195 51844239 MLT1D 503 + 11 55 93547 44 chain 138567 chrX 156040895 + 51940907 51942814 L1PA11 4918 + 2695 4578 13217 25 3 0 67 1 0 4 1 2 717 0 1 206 1 0 99 24 32 473 11 7 64 11 2 12 3 0 7 3 9 52 2 0 14 2 1 19 45 32 14 1 0 13 2 0 11 chain 2758 chrX 156040895 + 51953406 51953535 L2a 937 + 225 338 101912 17 4 3 14 7 9 16 28 27 15 14 0 3 2 0 9 chain 3041 chrX 156040895 + 52000854 52000911 L1PB3 3668 + 3543 3595 99408 23 7 3 13 1 0 13 chain 105971 chrX 156040895 + 52010795 52012341 L1PA5 6144 + 4906 6144 17568 183 0 1 214 0 1 473 314 0 113 1 0 105 0 1 99 0 4 44 chain 191504 chrX 156040895 + 52093820 52095952 L1PA3long 6157 + 4024 6156 10046 1276 1 0 685 0 1 170 chain 425835 chrX 156040895 + 52111555 52117265 L1PA7 6471 + 609 6468 4803 22 3 1 16 0 19 10 5 5 35 75 160 11 19 19 26 21 21 37 79 100 24 22 5 115 0 25 19 1 0 9 8 9 185 4 13 23 39 37 6 0 2 28 23 24 905 0 2 119 2 0 198 2 1 1892 0 10 336 0 1 5 1 0 537 1 0 847 chain 465181 chrX 156040895 + 52119155 52124682 L1PA5 6144 + 0 5515 3985 91 0 1 696 31 14 12 4 21 334 9 0 264 3 1 512 0 1 497 7 9 20 9 0 64 0 2 50 0 1 2188 0 1 736 chain 41268 chrX 156040895 + 52128028 52128587 L1PA15 4387 + 63 616 33809 9 0 2 171 1 0 200 6 1 65 1 0 83 1 0 22 chain 33353 chrX 156040895 + 52134859 52135233 L1PA3long 6157 + 5778 6152 39215 374 chain 43470 chrX 156040895 + 52155721 52156200 L1PA3long 6157 + 5677 6156 32469 479 chain 462897 chrX 156040895 + 52159921 52165216 L1PA4 6152 + 0 5303 4053 172 1 2 1032 0 1 993 0 2 696 0 1 298 0 1 1376 0 1 595 0 1 132 chain 528429 chrX 156040895 + 52170784 52176918 L1PA5 6144 + 0 6135 1897 337 23 21 1263 1 0 877 0 2 509 1 0 149 1 0 1183 0 4 1790 chain 110697 chrX 156040895 + 52179619 52181292 L1PA14 3548 + 1819 3456 16981 8 0 1 62 18 1 76 3 0 317 6 5 19 0 1 231 1 0 143 5 0 4 0 1 229 42 37 27 0 30 46 6 0 39 55 35 6 1 0 14 3 4 7 1 0 59 1 0 111 1 0 10 5 1 34 13 10 10 1 0 59 chain 43573 chrX 156040895 + 52220054 52220543 MER9a1 513 + 2 491 32399 489 chain 552371 chrX 156040895 + 52222105 52228125 L1PA2 6032 + 12 6031 590 797 4 0 284 0 1 3448 0 1 1317 0 1 170 chain 130330 chrX 156040895 + 52228125 52229989 L1MA2 4263 + 2257 4114 13967 385 1 0 266 5 6 40 47 56 430 3 0 126 0 3 11 6 1 4 0 1 76 1 0 131 37 34 89 2 1 39 15 13 65 5 7 17 7 0 11 0 1 35 1 0 9 chain 86656 chrX 156040895 + 52235924 52236975 MER11C 1089 + 0 1063 20284 150 0 2 98 1 2 65 0 4 211 24 25 131 0 4 12 1 0 33 0 1 325 chain 34607 chrX 156040895 + 52244047 52244474 L1PA7 6471 + 5188 5614 38285 65 9 10 234 8 6 111 chain 72164 chrX 156040895 + 52244474 52245339 L1PA7 6471 + 5617 6468 23493 331 17 7 506 4 0 7 chain 25816 chrX 156040895 + 52263654 52264096 MLT2A2 560 + 0 560 47996 168 61 59 68 0 1 4 4 113 45 0 5 39 6 4 12 6 13 29 chain 41347 chrX 156040895 + 52271717 52272226 MER11B 1079 + 0 510 33763 363 0 2 64 1 0 34 1 0 29 1 2 16 chain 28282 chrX 156040895 + 52272233 52272588 MER4A1 472 + 122 472 44440 65 4 0 81 1 0 204 chain 3024 chrX 156040895 + 52288265 52288300 MER52A 1651 + 798 834 99631 17 0 1 18 chain 534649 chrX 156040895 + 52291785 52297931 L1PA4 6152 + 1 6152 1638 74 0 1 959 1 0 420 0 1 254 1 0 603 2 0 5 0 2 809 2 1 47 0 1 72 0 5 434 1 0 2128 1 2 333 chain 99801 chrX 156040895 + 52298731 52299985 L1P2 5180 + 2 1271 18320 133 32 31 34 1 0 47 7 6 262 1 0 71 0 4 197 0 15 469 chain 107026 chrX 156040895 + 52308091 52309292 L1PA5 6144 + 4758 5962 17432 913 0 3 288 chain 91075 chrX 156040895 + 52321418 52322444 L1PA4 6152 + 4494 5522 19489 876 7 9 143 chain 109107 chrX 156040895 + 52383815 52385014 L1PA3long 6157 + 4959 6157 17170 1047 1 0 151 chain 37665 chrX 156040895 + 52472913 52473395 LTR2B 499 + 0 499 36294 14 0 1 59 3 0 37 0 19 175 3 4 8 1 0 182 chain 41255 chrX 156040895 + 52477392 52477866 L1PA7 6471 + 5986 6460 33817 474 chain 192280 chrX 156040895 + 52550771 52553226 L1P2 5180 + 4 2529 10011 146 1 0 44 1 0 45 0 29 180 33 14 20 0 1 32 1 0 47 16 15 123 3 7 80 0 15 258 0 1 394 0 5 748 5 6 24 0 44 25 19 12 210 chain 87081 chrX 156040895 + 52571328 52572361 MER11C 1089 + 0 1073 20221 567 2 1 234 0 69 138 28 0 64 chain 124414 chrX 156040895 + 52601357 52602739 L1PA3long 6157 + 4774 6157 14789 98 0 1 1284 chain 37179 chrX 156040895 + 52693946 52694368 L1PA4 6152 + 5730 6149 36626 411 3 0 8 chain 104553 chrX 156040895 + 52727585 52728745 L1PA4 6152 + 4579 5740 17750 494 0 1 666 chain 32326 chrX 156040895 + 52796816 52797266 LTR46 455 + 0 455 40093 188 8 6 21 0 1 140 25 32 6 1 0 61 chain 98808 chrX 156040895 + 52837020 52838427 L1PA4 6152 + 4600 6143 18433 604 1 0 16 270 406 37 0 1 479 chain 38900 chrX 156040895 + 52839988 52840463 L1PA6 6164 + 5678 6162 35429 312 23 32 140 chain 23834 chrX 156040895 + 52855548 52855898 L1PA8 5853 + 5495 5853 51047 69 1 0 33 8 16 53 1 0 12 1 12 10 8 0 43 1 0 17 2 1 22 0 1 69 chain 152061 chrX 156040895 + 52858778 52860561 L1PA3long 6157 + 4332 6080 12222 695 1 0 4 0 1 272 0 4 443 40 1 328 chain 11862 chrX 156040895 + 52871195 52871419 L1PB1 5432 + 5221 5422 67091 16 1 0 44 1 0 15 2 0 6 16 6 19 7 4 15 2 0 26 1 0 19 1 0 13 1 0 14 1 0 4 chain 276123 chrX 156040895 + 52877764 52880893 L1PA4 6152 + 2109 5225 7544 278 0 1 1265 6 0 8 1 0 28 2 0 616 1 0 433 4 0 487 chain 142320 chrX 156040895 + 52929056 52930749 L1PA7 6471 + 4765 6462 12909 190 1 0 39 1 0 174 0 1 452 0 3 430 0 1 252 0 1 154 chain 215391 chrX 156040895 + 52970784 52973220 L1PA5 6144 + 3687 6142 9161 246 0 1 364 1 0 433 4 0 592 26 14 25 0 36 594 1 0 150 chain 29067 chrX 156040895 + 53044808 53045195 MER41G 495 + 5 386 43238 193 12 8 131 2 0 49 chain 23968 chrX 156040895 + 53057466 53057784 AluSp 311 + 10 309 50840 35 0 1 79 18 1 162 3 0 21 chain 15331 chrX 156040895 + 53111674 53111867 MER107 203 + 0 201 61870 156 1 9 36 chain 403119 chrX 156040895 + 53145018 53149611 L1PA4 6152 + 1 5519 5117 474 7 11 652 0 6 309 0 4 160 0 18 209 0 4 739 0 1 908 12 895 161 0 1 745 0 4 217 chain 9285 chrX 156040895 + 53164577 53164705 LTR9B 643 + 0 138 71943 67 4 6 30 0 8 27 chain 148593 chrX 156040895 + 53165646 53167682 HUERS-P3b-int 2065 + 13 2031 12450 81 3 0 214 23 27 220 26 23 62 0 8 39 4 0 33 0 1 36 18 17 50 5 4 21 1 0 57 2 0 84 0 2 228 0 1 164 0 1 85 1 0 44 4 2 84 2 0 13 1 0 25 1 0 89 3 1 73 2 0 18 4 1 9 4 1 53 4 0 57 2 1 24 4 6 59 chain 13223 chrX 156040895 + 53168226 53168402 LTR9B 643 + 0 186 64740 67 4 6 30 0 8 75 chain 14920 chrX 156040895 + 53322650 53322888 L1MB7 1623 + 933 1176 62367 57 10 9 23 27 33 7 0 1 4 1 0 109 chain 9447 chrX 156040895 + 53324561 53324672 HY1 111 + 0 111 71609 111 chain 23211 chrX 156040895 + 53350719 53351091 L1MC2 1988 + 327 700 52065 67 2 0 44 2 0 67 0 4 28 9 13 29 25 24 34 5 3 60 chain 7234 chrX 156040895 + 53416717 53416812 L1MB2 1706 + 1600 1694 76844 11 1 0 83 chain 3562 chrX 156040895 + 53437532 53437574 MER57C2 434 + 326 368 94739 42 chain 21020 chrX 156040895 + 53461881 53462195 LTR61 567 + 0 293 55095 21 18 0 34 0 11 128 13 0 28 1 0 71 chain 16727 chrX 156040895 + 53468914 53469869 Tigger4b 360 + 0 360 60126 25 7 0 9 15 39 10 0 1 16 16 39 31 636 0 83 0 1 49 12 11 46 chain 43571 chrX 156040895 + 53470038 53470528 LTR2C 499 + 8 499 32402 427 0 1 63 chain 1177 chrX 156040895 + 53502226 53502430 LTR49-int 1717 + 658 858 59693 33 1 0 32 1 0 11 3 1 6 1 0 40 0 1 76 chain 136422 chrX 156040895 + 53503415 53505081 SVA_C 1631 + 41 1628 13401 562 40 0 234 0 42 31 1 0 45 6 7 11 0 1 16 78 0 12 2 0 5 2 1 10 1 0 610 chain 5152 chrX 156040895 + 53504361 53504417 SVA_C 1631 + 1035 1091 66107 56 chain 634 chrX 156040895 + 53505081 53505191 LTR49-int 1717 + 887 994 59693 20 2 1 71 2 0 15 chain 9475 chrX 156040895 + 53510175 53510409 LTR49 580 + 6 213 71546 5 1 0 64 9 10 12 0 1 33 2 1 15 8 1 14 53 33 18 chain 40083 chrX 156040895 + 53512674 53513137 LTR2 463 + 0 463 34601 463 chain 434367 chrX 156040895 + 53514926 53520315 Harlequin-int 5206 + 125 5206 4680 181 1 0 70 2 0 78 1 2 28 3 0 198 1 0 164 0 1 297 0 3 108 1 0 56 0 4 2073 0 1 248 0 1 15 0 2 29 1 0 4 1 2 8 0 1 547 0 1 288 0 9 6 6 0 5 3 0 125 314 0 91 2 1 434 chain 37440 chrX 156040895 + 53520315 53520776 LTR2 463 + 0 463 36447 127 1 4 107 5 4 221 chain 39840 chrX 156040895 + 53520952 53521432 LTR10F 562 + 0 562 34784 107 0 84 40 3 0 91 3 4 236 chain 9179 chrX 156040895 + 53522098 53522239 Tigger2 2703 + 128 268 72167 18 13 12 110 chain 21190 chrX 156040895 + 53525598 53525914 THE1D 372 + 58 370 54900 42 1 2 58 41 36 174 chain 117557 chrX 156040895 + 53525939 53527870 THE1D-int 1627 + 20 1627 15964 18 2 1 384 5 8 209 10 17 62 25 7 70 20 21 89 316 0 143 2 0 308 3 4 248 1 0 4 1 3 11 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20 0 1 98 17 0 402 1 0 672 0 1 626 0 1 150 0 1 5 1 0 492 0 1 1480 1 0 1485 chain 173771 chrX 156040895 + 67512079 67514465 L1PA6 6164 + 3996 6156 10909 219 0 2 78 264 37 30 0 4 498 6 0 468 2 3 59 5 4 219 0 1 538 chain 120792 chrX 156040895 + 67514514 67516171 L1P3 4156 + 2462 4137 15379 83 0 1 16 0 10 7 49 35 8 0 12 115 1 5 456 0 8 282 1 0 26 3 2 74 0 1 477 10 11 16 11 8 22 chain 41230 chrX 156040895 + 67520215 67520757 L1PB 1623 + 665 1218 33823 98 13 14 196 0 6 19 0 4 45 1 0 162 0 1 8 chain 17121 chrX 156040895 + 67589111 67589290 AluYb8 318 + 130 309 59672 179 chain 5630 chrX 156040895 + 67678829 67679096 L1MA7 2200 + 1951 2170 82658 26 79 61 12 11 0 40 66 48 20 2 1 11 chain 74595 chrX 156040895 + 67795271 67796598 L1PB3 3668 + 1833 3191 22935 55 9 11 14 138 147 49 26 47 186 1 0 29 1 0 11 1 7 16 0 1 258 6 5 84 7 8 221 7 5 19 24 27 50 1 3 11 2 0 6 18 7 44 16 20 17 chain 83550 chrX 156040895 + 67799835 67800786 L1PA5 6144 + 5183 6135 20904 832 0 1 119 chain 283807 chrX 156040895 + 67821970 67825140 L1PA3long 6157 + 2979 6149 7324 1351 0 1 976 1 0 842 chain 393877 chrX 156040895 + 67830636 67835605 L1PA7 6471 + 903 6007 5251 143 1 22 9 0 1 202 1 85 522 0 1 63 1 13 667 30 32 548 0 1 54 5 11 251 0 1 180 0 1 883 2 0 462 13 14 233 2 3 208 14 13 93 1 0 330 0 7 51 chain 161749 chrX 156040895 + 67835743 67837557 L1PA4 6152 + 4334 6151 11627 16 1 0 1026 0 2 599 7 9 165 chain 59256 chrX 156040895 + 67871691 67872384 L1PA5 6144 + 5435 6129 26582 101 0 1 433 1 2 4 1 0 153 chain 39404 chrX 156040895 + 67921644 67922154 L1PA8A 6298 + 5793 6290 35078 101 31 17 96 0 1 282 chain 13550 chrX 156040895 + 67923784 67923956 L1PA7 6471 + 6275 6461 64251 132 3 17 37 chain 9746 chrX 156040895 + 67925198 67928342 L1MA2 4263 + 2278 2628 70940 14 0 1 90 0 3 5 2956 158 79 chain 541257 chrX 156040895 + 67942534 67948687 L1PA4 6152 + 6 6151 1258 454 6 0 115 0 1 4 1 0 473 1 0 1147 0 2 1084 0 1 652 2 0 696 1 0 743 1 0 773 chain 52154 chrX 156040895 + 67964640 67965234 L1PA4 6152 + 3503 4097 28827 594 chain 111844 chrX 156040895 + 67965234 67966493 L1PA4 6152 + 4099 5358 16831 1259 chain 138093 chrX 156040895 + 67968432 67970248 L1PB1 5432 + 3239 5115 13260 75 1 0 168 10 9 180 0 1 49 0 2 265 1 2 77 1 2 156 10 91 13 7 6 43 0 1 248 3 0 129 2 0 6 22 2 154 0 1 196 chain 34217 chrX 156040895 + 67984786 67985269 LTR2B 499 + 9 499 38552 5 1 0 35 17 7 9 1 0 46 0 7 7 5 17 164 0 1 12 1 0 180 chain 231129 chrX 156040895 + 67990453 67994528 L1PA8 5853 + 2444 5853 8719 74 1039 0 219 28 28 111 28 32 179 1 0 127 19 0 192 0 397 215 2 1 163 1 0 4 0 1 28 9 10 145 1 0 33 1 2 221 8 9 116 1 2 129 1 0 128 2 0 515 2 0 39 1 0 43 0 1 70 2 1 14 9 7 43 1 0 17 1 0 93 chain 50417 chrX 156040895 + 67990749 67991414 L1PA7 6471 + 5789 6461 29407 248 2 8 105 0 1 5 5 4 158 3 4 139 chain 81969 chrX 156040895 + 68010626 68011556 L1PA4 6152 + 1454 2384 21249 930 chain 144425 chrX 156040895 + 68011556 68013161 L1PA4 6152 + 2387 3992 12738 1605 chain 80566 chrX 156040895 + 68016051 68017091 MER11C 1089 + 0 1059 21521 246 0 9 62 0 4 65 1 0 304 1 5 4 1 0 38 0 1 99 15 17 9 0 1 56 1 0 130 0 1 8 chain 99238 chrX 156040895 + 68019421 68020664 L1P2 5180 + 1772 3021 18382 490 0 2 522 0 4 231 chain 77580 chrX 156040895 + 68042554 68043384 L1HS 6032 + 5202 6032 22185 830 chain 68070 chrX 156040895 + 68055323 68056115 L1PA5 6144 + 5354 6144 24439 778 3 1 11 chain 85728 chrX 156040895 + 68102130 68103212 L1P3 4156 + 3060 4137 20496 428 8 6 31 0 1 465 1 0 10 5 6 4 1 0 96 2 0 7 2 1 22 chain 192650 chrX 156040895 + 68103545 68105811 L1PA7 6471 + 4181 6464 9989 79 0 1 404 0 8 624 1 6 299 0 4 15 1 0 843 chain 51076 chrX 156040895 + 68132152 68132709 L1PA2 6032 + 5472 6029 29198 557 chain 16465 chrX 156040895 + 68157348 68157567 L1PA16 3655 + 3359 3579 60427 56 5 6 158 chain 259559 chrX 156040895 + 68168064 68170942 L1PA3long 6157 + 2554 6157 7985 1038 2 727 1507 0 1 77 1 0 253 chain 13857 chrX 156040895 + 68184054 68184206 L1PA4 6152 + 6000 6152 63786 152 chain 548607 chrX 156040895 + 68216915 68222939 L1PA2 6032 + 1 6031 827 254 2 1 3973 0 4 535 1 2 928 0 1 245 4 5 82 chain 527715 chrX 156040895 + 68224756 68230924 L1PA5 6144 + 0 6144 1928 120 0 14 1035 9 0 1034 26 0 502 1 2 233 0 1 210 1 0 13 3 1 222 0 1 294 3 0 2462 chain 383101 chrX 156040895 + 68264551 68269105 L1PA5 6144 + 3 4500 5425 446 6 4 397 5 6 1285 0 1 979 7 3 49 1 0 292 0 1 78 58 0 59 0 1 737 0 4 155 chain 2570 chrX 156040895 + 68284330 68284362 MSTB1 431 + 29 60 103244 5 1 0 26 chain 45809 chrX 156040895 + 68313142 68313998 L1MA3 4352 + 3551 4352 31160 49 0 1 4 1 0 181 11 40 50 57 7 6 2 0 43 1 0 16 0 3 142 74 50 73 46 43 25 1 0 4 1 0 29 1 0 11 1 0 3 3 0 21 chain 169692 chrX 156040895 + 68325898 68327794 SVA_E 1901 + 5 1901 11117 148 1 0 588 0 1 20 0 1 54 1 0 16 1 0 18 5 6 17 0 1 12 1 2 38 3 0 31 2 1 181 5 6 99 0 1 655 chain 83275 chrX 156040895 + 68349084 68350076 L1PA7 6471 + 5489 6470 20968 134 3 0 514 1 0 321 4 0 7 3 0 5 chain 6818 chrX 156040895 + 68356836 68356951 L1MB8 1703 + 1464 1579 78249 44 1 0 4 11 12 55 chain 7111 chrX 156040895 + 68359961 68360094 MIR 256 + 87 219 77217 50 33 32 50 chain 9333 chrX 156040895 + 68361074 68361185 HY1 111 + 0 111 71846 111 chain 36023 chrX 156040895 + 68438907 68439411 MER51A 677 + 0 658 37400 176 0 135 10 10 28 12 0 1 149 32 32 115 chain 6434 chrX 156040895 + 68454280 68454362 HY4 93 + 11 93 79556 82 chain 22349 chrX 156040895 + 68457598 68457862 L1PA5 6144 + 5877 6142 53343 124 0 1 140 chain 22200 chrX 156040895 + 68477905 68478149 L1PA5 6144 + 5888 6132 53556 244 chain 60969 chrX 156040895 + 68478820 68479520 SVA_A 1864 + 1162 1864 26116 115 9 7 149 0 4 427 chain 50307 chrX 156040895 + 68493712 68494289 L1PA5 6144 + 5547 6125 29450 134 3 4 440 chain 29221 chrX 156040895 + 68515044 68515353 AluYk12 309 + 0 309 43017 309 chain 26475 chrX 156040895 + 68546719 68547014 L1PA5 6144 + 5845 6139 47018 46 1 0 248 chain 51355 chrX 156040895 + 68564762 68565771 MER4E1 777 + 47 769 29093 138 0 15 21 0 13 37 0 2 197 0 1 70 2 9 27 327 0 175 0 2 15 chain 30951 chrX 156040895 + 68568453 68568903 MLT2A1 477 + 0 469 41171 142 0 1 19 8 12 68 3 1 141 30 0 10 10 56 19 chain 127252 chrX 156040895 + 68593623 68595403 L1MA2 4263 + 766 2560 14391 29 7 11 82 6 8 55 1 2 84 7 8 65 0 2 208 0 3 154 1 2 39 1 2 429 0 4 16 9 8 219 0 1 100 17 10 119 5 0 6 5 10 39 0 2 77 chain 530921 chrX 156040895 + 68602274 68608394 L1PA4 6152 + 1 6140 1790 127 0 14 2257 0 1 29 0 3 1508 0 1 404 9 13 26 58 4 1429 0 1 188 0 49 85 chain 4441 chrX 156040895 + 68610591 68610641 L1MB7 1623 + 263 313 88649 50 chain 34482 chrX 156040895 + 68615175 68615576 L1PA7 6471 + 5476 5880 38369 138 0 4 85 1 0 177 chain 42884 chrX 156040895 + 68628861 68629403 MLT2A2 560 + 4 560 32842 136 0 1 256 7 19 74 0 1 69 chain 71530 chrX 156040895 + 68728644 68729690 L1MA2 4263 + 3071 4102 23650 144 1 4 170 14 1 184 8 13 75 1 0 80 5 9 58 9 7 4 1 0 129 40 38 71 7 0 17 1 0 27 chain 557290 chrX 156040895 + 68736250 68742396 L1PA3long 6157 + 6 6157 284 6002 0 5 144 chain 32735 chrX 156040895 + 68742412 68742871 L1PB3 3668 + 3016 3474 39728 68 17 18 87 0 1 101 1 0 100 1 0 78 1 0 5 chain 469124 chrX 156040895 + 68776196 68781821 L1PA6 6164 + 0 6152 3883 88 0 511 191 1 18 559 0 1 962 17 0 93 0 1 673 0 6 81 6 8 818 1 0 233 0 2 420 4 5 423 8 8 211 0 4 836 chain 59693 chrX 156040895 + 68786433 68787110 L1PA5 6144 + 5467 6142 26461 249 0 2 417 4 0 7 chain 24275 chrX 156040895 + 68797573 68797928 THE1A 353 + 0 353 50382 13 2 0 34 0 1 48 32 31 226 chain 97977 chrX 156040895 + 68797928 68799181 THE1A-int 1579 + 0 1574 18530 130 0 2 412 13 11 239 6 7 27 0 1 38 0 3 118 0 1 58 0 315 212 chain 3877 chrX 156040895 + 68810434 68810482 ERVL-int 1947 + 1812 1860 92309 48 chain 330012 chrX 156040895 + 68814342 68818736 L1PB1 5432 + 1085 5422 6215 349 2 3 1332 9 14 37 2 0 5 0 1 15 2 1 755 4 5 125 9 12 189 0 1 184 0 1 513 2 0 135 7 2 339 1 2 9 29 0 22 1 0 6 3 2 14 5 1 9 3 1 51 2 1 16 1 0 42 0 3 10 70 54 24 1 0 8 20 13 13 1 0 18 chain 6857 chrX 156040895 + 68860042 68860164 MER5A 189 + 27 151 78114 60 30 32 32 chain 112140 chrX 156040895 + 68951979 68953402 LTR12C 1709 + 0 1709 16794 48 0 1 223 11 14 13 1 2 33 23 66 63 0 1 4 1 0 281 9 46 23 0 159 94 0 47 106 11 4 32 0 2 447 chain 171484 chrX 156040895 + 69053100 69055044 L1PA6 6164 + 4217 6160 11023 1519 1 0 424 chain 4099 chrX 156040895 + 69055931 69056040 L1MC4a 1092 + 27 122 90789 18 1 0 11 17 17 12 19 6 31 chain 79035 chrX 156040895 + 69057564 69058440 L1PA3long 6157 + 5284 6157 21860 868 3 0 5 chain 22756 chrX 156040895 + 69128019 69128311 MER47A 366 + 35 330 52746 76 0 2 6 0 1 210 chain 47697 chrX 156040895 + 69244914 69245466 L1PA7 6471 + 5916 6468 30401 552 chain 428743 chrX 156040895 + 69245610 69251213 L1PA7 6471 + 3 6464 4768 149 20 19 110 2 1 125 1 2 50 1 0 777 0 1 744 6 1186 330 1 0 89 324 8 63 6 0 75 0 6 338 0 1 166 22 24 411 1 3 939 7 0 46 0 1 473 1 0 319 2 0 5 chain 33505 chrX 156040895 + 69304784 69305194 L1PA6 6164 + 5761 6162 39088 358 7 0 35 2 0 8 chain 20120 chrX 156040895 + 69327898 69328245 THE1D 372 + 0 372 56236 56 0 26 16 1 0 47 0 8 7 76 68 144 chain 535841 chrX 156040895 + 69350764 69356897 L1PA5 6144 + 0 6141 1575 120 1 15 8 14 0 1076 0 1 1941 1 4 1176 0 4 948 2 1 40 4 9 792 4 0 6 chain 17818 chrX 156040895 + 69369870 69370095 MER30 238 + 0 238 58863 107 4 17 114 chain 3431 chrX 156040895 + 69370778 69370817 MLT2F 649 + 593 632 95809 39 chain 93345 chrX 156040895 + 69416609 69418054 LTR12C 1709 + 0 1709 19139 14 0 1 114 6 8 71 6 26 26 7 8 23 4 5 40 0 43 83 45 0 18 12 13 73 7 13 71 0 119 68 1 0 234 0 47 95 46 15 235 62 31 40 0 131 44 chain 132145 chrX 156040895 + 69421364 69422997 SVA_B 1603 + 7 1603 13815 15 11 2 18 15 8 146 1 0 466 1 0 184 0 1 4 3 1 12 1 0 15 4 0 41 4 0 43 4 0 13 1 0 10 21 16 330 0 1 270 chain 543445 chrX 156040895 + 69448371 69454392 L1PA2 6032 + 1 6032 1112 709 0 7 1480 0 1 1182 0 1 815 0 1 1835 chain 63469 chrX 156040895 + 69482921 69483621 L1PA3long 6157 + 5455 6155 25531 700 chain 13644 chrX 156040895 + 69485044 69485224 L1P3 4156 + 3962 4136 64098 44 3 0 101 2 0 7 2 1 21 chain 18821 chrX 156040895 + 69580808 69581028 L1PA7 6471 + 6242 6462 57750 220 chain 27371 chrX 156040895 + 69586007 69586296 AluYd8 298 + 0 289 45735 289 chain 122573 chrX 156040895 + 69653612 69654954 L1PA4 6152 + 4802 6148 15101 480 0 4 862 chain 10921 chrX 156040895 + 69672478 69672599 5S 121 + 0 121 68663 121 chain 74328 chrX 156040895 + 69712372 69713210 L1PA4 6152 + 5302 6139 22999 516 1 0 80 1 0 109 1 2 130 chain 7526 chrX 156040895 + 69799793 69799892 L1MA4A 3247 + 3011 3104 76061 27 6 0 66 chain 338481 chrX 156040895 + 69816175 69820819 L1PA11 4918 + 8 4578 6100 7 1 0 27 2 0 42 4 1 30 0 2 10 2 0 18 1 0 36 1 0 32 2 0 5 2 1 128 10 8 143 1 0 70 9 0 137 5 0 19 0 1 111 2 1 15 0 1 22 10 0 7 0 5 521 3 1 9 0 4 47 28 24 132 8 7 16 2 1 163 1 2 381 2 1 5 0 1 58 3 7 448 2 0 193 4 5 279 9 2 298 1 0 95 7 6 75 0 2 7 2 0 19 18 3 632 1 0 45 1 2 15 2 1 18 3 4 58 2 0 14 1 0 15 58 46 5 1 0 13 2 0 11 chain 28811 chrX 156040895 + 69842624 69843037 MSTA 426 + 0 414 43610 143 21 27 35 4 1 32 6 4 172 chain 313875 chrX 156040895 + 69871741 69876290 L1PB1 5432 + 797 5118 6537 34 8 9 547 29 35 178 0 1 113 5 7 9 1 0 213 11 12 116 12 15 402 4 0 89 0 5 148 9 75 31 22 20 151 0 1 4 1 0 28 0 6 116 320 0 337 15 23 207 0 3 181 0 5 387 1 0 31 2 0 75 5 3 65 0 1 150 5 0 57 8 6 20 0 1 44 0 3 342 3 2 13 chain 69407 chrX 156040895 + 69890105 69891051 L1PA11 4918 + 3399 4331 24139 291 5 0 50 44 25 285 3 4 42 6 14 25 0 1 195 chain 5209 chrX 156040895 + 69891051 69891111 L1PA11 4918 + 4333 4393 84633 60 chain 8767 chrX 156040895 + 69891127 69891303 L1PA11 4918 + 4407 4567 73066 67 2 0 14 1 0 19 21 13 13 10 6 15 1 0 13 chain 115214 chrX 156040895 + 69949849 69951100 L1PA3long 6157 + 4904 6156 16354 47 0 1 1204 chain 11242 chrX 156040895 + 69951227 69951405 MLT1A1 405 + 186 355 68179 9 7 0 75 12 11 54 1 0 20 chain 316591 chrX 156040895 + 69983878 69987287 L1PA2 6032 + 2623 6032 6476 3409 chain 118915 chrX 156040895 + 69997039 69998588 THE1A-int 1579 + 0 1554 15721 302 5 6 155 0 3 262 68 6 9 0 62 414 0 6 150 9 4 175 chain 50377 chrX 156040895 + 70072716 70073976 PABL_A 660 + 0 660 29419 60 1 0 10 0 5 6 0 9 72 331 17 24 4 3 223 298 0 231 chain 12627 chrX 156040895 + 70098943 70099370 L1MD2 1676 + 1240 1654 65760 31 36 37 15 1 0 106 196 183 42 chain 55572 chrX 156040895 + 70099508 70100124 L1P1 4361 + 2851 3467 27696 616 chain 378800 chrX 156040895 + 70100129 70104255 L1PA3long 6157 + 2030 6157 5509 3276 0 1 850 chain 5095 chrX 156040895 + 70116867 70116928 LTR51 675 + 0 61 85181 61 chain 126658 chrX 156040895 + 70122464 70123902 SVA_B 1603 + 42 1603 14457 590 1 3 181 0 40 8 0 42 29 0 41 621 2 0 6 chain 25773 chrX 156040895 + 70148950 70149245 AluSp 311 + 4 299 48064 295 chain 8440 chrX 156040895 + 70161381 70161494 L1MC3 1789 + 1094 1208 73819 31 1 2 81 chain 35696 chrX 156040895 + 70209969 70210397 THE1C-int 1605 + 0 429 37605 14 2 1 221 0 2 191 chain 6723 chrX 156040895 + 70217947 70218020 THE1C-int 1605 + 1525 1598 78564 73 chain 25436 chrX 156040895 + 70218029 70218723 THE1C 375 + 4 373 48575 65 341 15 91 0 1 9 13 14 150 1 0 24 chain 12636 chrX 156040895 + 70244200 70244346 LTR8 732 + 586 732 65739 146 chain 19740 chrX 156040895 + 70246241 70246610 L1PA15 4387 + 3996 4352 56741 62 0 4 42 1 0 26 1 0 54 2 1 23 4 0 8 2 1 32 27 24 32 29 23 24 chain 7033 chrX 156040895 + 70396288 70396372 HY4 93 + 10 93 77491 61 1 0 22 chain 2816 chrX 156040895 + 70397480 70397535 MER4D 903 + 800 854 101549 25 11 9 14 0 1 5 chain 26193 chrX 156040895 + 70399666 70399957 L1PA3long 6157 + 5862 6157 47436 240 0 4 51 chain 92855 chrX 156040895 + 70547410 70548428 L1PA4 6152 + 5132 6151 19205 644 0 1 374 chain 98007 chrX 156040895 + 70550048 70551545 L1MA3 4352 + 2878 4352 18524 6 0 5 143 30 28 327 2 0 191 7 4 323 0 1 67 17 12 57 13 11 23 38 29 7 0 7 14 9 10 36 1 0 16 0 1 9 0 2 53 2 0 22 8 6 29 1 0 4 20 9 22 chain 92817 chrX 156040895 + 70571955 70573003 L1PA4 6152 + 5090 6143 19213 99 1 6 948 chain 28514 chrX 156040895 + 70583997 70584306 AluYb8 318 + 0 305 44098 126 4 0 179 chain 112463 chrX 156040895 + 70586752 70588262 THE1D-int 1627 + 0 1627 16756 77 2 1 23 3 6 234 5 107 273 47 58 406 11 8 126 0 4 294 0 1 9 chain 165320 chrX 156040895 + 70600325 70602913 L1P1 4361 + 2439 4341 11393 1210 703 20 481 1 0 155 1 0 23 2 1 12 chain 31822 chrX 156040895 + 70616544 70617157 L1MA3 4352 + 3750 4347 40477 158 1 0 181 151 145 26 2 0 22 1 0 6 1 0 19 8 7 14 6 2 17 chain 21509 chrX 156040895 + 70636917 70637259 L1PA11 4918 + 4183 4517 54500 125 18 14 7 0 6 56 4 3 9 6 4 67 2 0 14 1 0 20 4 0 9 chain 541799 chrX 156040895 + 70638902 70644924 L1PA3long 6157 + 1 6149 1218 151 0 1 45 6 0 166 0 1 411 0 128 1303 0 2 3940 chain 57138 chrX 156040895 + 70647767 70648422 L1PA5 6144 + 5488 6144 27213 506 3 4 146 chain 8483 chrX 156040895 + 70655731 70655842 MLT1C 463 + 351 462 73711 111 chain 44968 chrX 156040895 + 70657592 70658080 L1PA3long 6157 + 5664 6152 31599 488 chain 156907 chrX 156040895 + 70660898 70662695 L1P1 4361 + 4 1810 11945 201 1 0 609 3 9 26 0 1 305 0 3 652 chain 146538 chrX 156040895 + 70678934 70680596 SVA_D 2077 + 1 2077 12573 58 0 2 43 0 27 497 0 39 21 0 40 33 3 0 134 0 83 41 0 1 16 0 2 51 1 0 131 1 225 632 chain 2897 chrX 156040895 + 70683830 70683868 L1M3 994 + 534 572 100856 38 chain 3325 chrX 156040895 + 70684156 70684210 L1M3 994 + 40 92 96804 21 1 0 14 1 0 17 chain 43674 chrX 156040895 + 70686102 70686700 L1PA8 5853 + 5258 5853 32334 97 0 1 208 1 0 6 0 1 39 2 0 66 6 5 10 1 0 4 6 7 38 2 1 15 6 5 75 0 1 16 chain 92450 chrX 156040895 + 70705422 70706464 L1PA5 6144 + 5096 6140 19278 281 0 1 82 0 1 535 0 1 134 1 0 9 chain 64838 chrX 156040895 + 70707830 70708850 L1PA16 3655 + 2647 3619 25231 28 2 1 101 26 45 40 1 0 20 5 4 12 38 0 19 1 0 195 0 1 91 1 0 86 2 0 125 8 9 151 1 0 18 33 10 16 chain 92958 chrX 156040895 + 70719493 70720528 L1PA5 6144 + 5106 6143 19185 187 0 1 516 0 1 332 chain 537096 chrX 156040895 + 70728178 70734303 L1PA4 6152 + 1 6141 1504 854 0 1 305 0 3 699 0 1 195 1 7 1536 0 1 546 0 3 1220 2 0 95 0 1 507 0 1 165 chain 99965 chrX 156040895 + 70737895 70739117 L1PA8 5853 + 4639 5853 18303 86 0 1 283 2 0 75 0 2 478 1 0 46 2 0 62 1 0 6 2 1 8 2 1 52 3 1 19 1 0 93 chain 92905 chrX 156040895 + 70749916 70750933 L1PA2 6032 + 5012 6031 19194 549 0 2 468 chain 17521 chrX 156040895 + 70750966 70751165 L1PA4 6152 + 5476 5675 59216 199 chain 42084 chrX 156040895 + 70751167 70751635 L1PA4 6152 + 5675 6143 33299 468 chain 429497 chrX 156040895 + 70756243 70761718 L1PA8 5853 + 284 5848 4755 17 3 7 126 0 21 77 0 1 88 14 18 104 1 0 4 0 1 204 3 4 4 1 0 461 3 2 596 2 0 461 1 5 63 0 1 98 0 1 81 0 2 5 6 4 179 0 2 179 0 1 99 2 0 336 0 5 728 0 1 259 0 5 134 0 7 7 8 1 321 7 5 554 1 0 46 2 0 68 0 34 25 10 26 71 5 4 11 chain 6504 chrX 156040895 + 70762302 70762387 L1MA2 4263 + 5 89 79331 17 4 3 64 chain 10704 chrX 156040895 + 70763061 70763235 L1PB2 3958 + 3661 3838 69037 20 1 0 41 22 28 25 1 0 7 1 0 56 chain 140437 chrX 156040895 + 70765415 70767828 L1MA2 4263 + 2044 4104 13061 16 0 4 175 1 0 194 1 0 4 7 11 85 0 1 109 1 0 6 1 0 109 348 0 358 1 0 16 6 12 52 0 8 4 1 0 178 7 8 123 91 91 13 1 2 154 13 0 34 3 0 147 1 0 6 2 1 73 0 1 10 2 0 5 8 3 47 chain 14083 chrX 156040895 + 70770434 70770589 L1PA2 6032 + 5877 6032 63481 155 chain 3875 chrX 156040895 + 70778359 70778408 MLT1A0 366 + 4 53 92322 49 chain 512438 chrX 156040895 + 70780337 70786481 L1PA6 6164 + 0 6162 2647 343 0 1 455 1 18 202 1 0 187 15 16 411 1 0 701 12 1 149 18 19 121 1 0 232 1 2 261 0 1 49 0 4 16 0 1 340 1 0 58 0 1 114 2 0 324 1 0 329 2 6 539 0 1 115 0 8 992 1 0 107 4 0 38 chain 8058 chrX 156040895 + 70789205 70789310 L1MA7 2200 + 1349 1454 74731 105 chain 57913 chrX 156040895 + 70796543 70797336 L1PA16 3655 + 2678 3462 26994 30 3 0 194 1 4 16 1 0 4 9 5 273 1 0 85 3 1 120 2 1 51 chain 70706 chrX 156040895 + 70809983 70810800 L1PA7 6471 + 5650 6469 23825 806 0 2 11 chain 154576 chrX 156040895 + 70812602 70814342 L1PA5 6144 + 3136 4873 12082 546 1 0 823 2 0 368 chain 21268 chrX 156040895 + 70821297 70821685 MSTA 426 + 0 426 54804 108 5 29 16 1 5 50 2 0 9 48 46 19 23 37 107 chain 545861 chrX 156040895 + 70838498 70844621 L1PA4 6152 + 0 6151 977 456 12 6 118 1 0 155 0 1 522 0 1 146 0 9 70 0 1 2867 1 4 303 0 1 130 0 21 527 4 1 128 0 1 683 chain 18707 chrX 156040895 + 70857793 70858167 L1PB1 5432 + 5053 5395 57891 50 1 2 11 4 1 21 1 0 9 16 11 9 2 0 53 2 1 16 1 0 43 1 0 14 27 15 18 11 8 11 2 0 24 1 0 21 1 0 4 chain 463295 chrX 156040895 + 70862981 70869031 L1PA8 5853 + 108 5843 4043 194 20 8 37 2 0 358 2 0 172 0 1 35 0 1 92 0 1 9 0 2 55 1 2 26 11 1 452 322 0 44 20 30 390 0 1 29 0 2 430 0 4 404 1 0 37 1 0 4 0 1 57 2 5 149 0 1 79 9 1 166 1 2 275 0 23 813 3 1 79 2 1 35 0 1 392 2 0 67 2 1 8 1 2 99 0 1 130 1 0 246 1 0 44 3 1 47 0 1 20 1 0 11 1 0 6 0 1 45 2 1 19 2 1 82 chain 5605 chrX 156040895 + 70881615 70881716 L1MA3 4352 + 4237 4332 82784 23 2 0 22 1 0 5 6 5 22 1 0 14 1 0 4 chain 6862 chrX 156040895 + 70885456 70885572 L1MB1 2102 + 1457 1567 78093 8 0 1 32 1 0 7 0 1 32 15 8 21 chain 74413 chrX 156040895 + 70887673 70889133 L1M1 2793 + 512 1855 22982 10 3 0 10 2 1 8 1 0 13 267 175 11 9 5 20 4 1 6 2 0 25 8 7 26 2 0 9 1 0 54 3 1 8 1 0 68 0 1 12 2 1 19 1 0 105 9 9 18 4 6 38 1 0 69 4 0 21 7 0 122 0 3 81 24 22 227 0 4 73 28 30 24 chain 49737 chrX 156040895 + 70892745 70893332 L1PA8 5853 + 1883 2473 29663 143 1 0 62 2 6 379 chain 16315 chrX 156040895 + 70893352 70893546 L1PA8 5853 + 2473 2668 60610 127 0 1 67 chain 248770 chrX 156040895 + 70893556 70896857 L1PA8 5853 + 2673 5679 8276 312 1 3 134 0 1 262 3 0 64 306 0 35 1 0 236 0 1 271 0 11 331 0 1 477 0 1 106 1 0 90 0 2 504 1 0 49 1 0 46 2 0 24 4 5 40 chain 9670 chrX 156040895 + 70904667 70904784 MER33 330 + 0 117 71117 117 chain 23458 chrX 156040895 + 70909638 70909921 AluSp 311 + 9 288 51654 111 6 0 42 0 2 124 chain 3425 chrX 156040895 + 70955069 70955109 MADE1 96 + 3 44 95854 27 0 1 13 chain 111658 chrX 156040895 + 70963689 70964910 L1PA3long 6157 + 4936 6157 16854 1221 chain 26746 chrX 156040895 + 71002408 71002784 THE1C 375 + 0 375 46621 63 22 23 95 1 0 169 1 0 25 chain 4275 chrX 156040895 + 71002968 71003013 L1PA8 5853 + 5519 5564 89654 45 chain 22608 chrX 156040895 + 71003014 71003309 L1PA8 5853 + 5564 5853 52974 46 2 0 69 1 0 15 3 2 44 2 1 19 1 0 93 chain 6697 chrX 156040895 + 71013493 71013634 L1MC1 2226 + 2061 2183 78650 22 5 0 20 3 1 17 1 0 7 18 8 16 1 0 31 chain 4337 chrX 156040895 + 71077092 71077144 MER2 342 + 14 66 89247 52 chain 35806 chrX 156040895 + 71264379 71264926 LTR7B 505 + 0 505 37521 139 0 10 43 71 0 35 2 0 5 2 25 184 14 13 20 7 6 25 chain 97287 chrX 156040895 + 71267192 71268673 HERVH-int 3825 + 2282 3825 18623 13 0 1 112 0 1 5 5 4 365 18 7 183 165 0 43 43 42 101 0 12 131 1 0 115 0 227 181 chain 33574 chrX 156040895 + 71272291 71272831 LTR7B 505 + 0 505 39022 20 0 1 120 0 10 57 17 15 10 2 0 5 8 4 7 8 0 32 34 0 14 0 5 113 0 1 27 14 13 22 5 4 25 chain 8643 chrX 156040895 + 71326551 71326691 LTR10E 629 + 490 627 73366 71 23 21 41 1 0 4 chain 7300 chrX 156040895 + 71494481 71494576 MER30 238 + 137 238 76667 14 5 11 76 chain 25275 chrX 156040895 + 71510833 71511128 AluSp 311 + 12 307 48826 295 chain 12173 chrX 156040895 + 71517159 71517487 L1MA3 4352 + 4054 4352 66521 10 0 1 28 100 78 81 8 6 24 2 1 5 1 0 29 1 0 4 1 0 5 11 8 18 chain 7506 chrX 156040895 + 71548456 71548622 L1PA15 4387 + 4188 4356 76118 19 4 0 9 3 9 31 20 21 10 0 3 24 3 1 13 2 0 28 chain 21547 chrX 156040895 + 71601073 71601342 AluSc 308 + 10 282 54439 174 12 15 83 chain 5308 chrX 156040895 + 71625755 71625853 MADE1 96 - 0 96 84157 40 25 23 33 chain 39657 chrX 156040895 + 71630920 71631763 MER41A 554 + 15 554 34920 7 0 1 85 8 13 218 2 0 24 312 0 88 0 4 99 chain 142034 chrX 156040895 + 71675199 71677552 SVA_A 1864 + 15 1863 12933 468 111 0 18 1 0 161 3 0 19 523 30 44 6 8 40 2 0 83 1 0 26 1 72 37 3 0 106 0 36 700 chain 3440 chrX 156040895 + 71675681 71675778 SVA_A 1864 + 537 636 31033 36 17 16 23 5 8 16 chain 18369 chrX 156040895 + 71675985 71676503 SVA_A 1864 + 836 1008 31033 17 429 80 30 4 7 38 chain 2413 chrX 156040895 + 71676023 71676109 SVA_F 1814 + 664 790 79206 20 37 0 16 5 82 8 chain 6828 chrX 156040895 + 71676109 71676392 SVA_F 1814 + 557 687 78212 11 153 0 20 10 12 18 3 0 42 6 7 20 chain 3816 chrX 156040895 + 71676120 71676256 SVA_F 1814 + 801 1064 79206 1 2 0 5 8 10 23 48 177 10 2 0 37 chain 12771 chrX 156040895 + 71729159 71729324 L1PA13 3608 + 2959 3125 65484 84 5 6 76 chain 22185 chrX 156040895 + 71793697 71793969 AluSc 308 + 11 282 53589 246 2 1 24 chain 154649 chrX 156040895 + 71801831 71803581 L1PA4 6152 + 4393 6143 12076 674 0 1 725 2 1 349 chain 112049 chrX 156040895 + 71807614 71808924 L1PA6 6164 + 3562 4874 16808 141 1 0 631 0 2 22 1 2 514 chain 509472 chrX 156040895 + 71816711 71822835 L1PA5 6144 + 0 6142 2797 125 1 15 13 3 15 240 22 31 185 0 1 186 0 17 341 9 0 658 0 9 472 8 0 89 13 12 531 1 4 178 0 4 231 2 3 225 0 2 75 4 1 165 6 7 159 39 2 59 4 5 280 1 5 122 0 1 160 1 0 1058 2 3 297 5 6 143 4 0 7 chain 525579 chrX 156040895 + 71829683 71836106 L1PA7 6471 + 16 6468 2019 375 0 1 308 5 25 617 13 13 100 14 15 217 1 4 353 5 7 408 0 1 36 0 1 134 0 1 7 11 6 451 0 4 397 1 0 1141 0 1 231 6 34 202 0 2 8 31 3 502 1 0 18 2 1 32 0 1 134 4 6 323 1 2 323 4 0 7 chain 15678 chrX 156040895 + 71837379 71837573 L1PA6 6164 + 5962 6156 61426 194 chain 193729 chrX 156040895 + 71877927 71880918 L1MA2 4263 + 1425 4083 9938 33 0 2 6 2 0 27 3 17 29 3 0 76 14 17 231 0 1 106 1 0 157 0 4 32 305 0 205 3 0 154 0 2 120 6 4 127 0 1 132 1 2 614 36 16 17 12 0 9 1 0 18 15 11 67 5 4 38 0 5 98 3 0 149 2 1 8 1 0 93 7 0 25 chain 125589 chrX 156040895 + 71881958 71883599 L1PA6 6164 + 4588 6162 14616 26 131 43 98 0 8 44 4 0 681 1 3 517 1 3 55 0 13 83 chain 12332 chrX 156040895 + 71888927 71889065 L1PA5 6144 + 5753 5891 66248 138 chain 21782 chrX 156040895 + 71889066 71889319 L1PA5 6144 + 5891 6144 54116 253 chain 14673 chrX 156040895 + 71947758 71948040 L1PB1 5432 + 5169 5427 62707 49 8 7 11 1 0 34 0 1 9 1 0 14 26 14 18 9 6 12 2 0 26 1 0 22 1 0 12 1 0 18 2 0 5 chain 25141 chrX 156040895 + 72087922 72088251 AluSp 311 + 0 302 49052 45 26 0 87 1 0 170 chain 58915 chrX 156040895 + 72106414 72107118 L1PA6 6164 + 5454 6160 26688 244 0 2 5 3 1 31 0 2 235 3 2 39 0 1 144 chain 37890 chrX 156040895 + 72163546 72164139 MER51A 677 + 0 675 36148 6 0 3 143 7 12 12 0 135 48 4 5 52 61 0 97 1 0 69 1 0 33 0 1 59 chain 1310 chrX 156040895 + 72163818 72163850 MER51A 677 + 253 285 86318 32 chain 3862 chrX 156040895 + 72166338 72166412 L1MD2 1676 + 1100 1174 92392 19 4 5 9 5 4 37 chain 124745 chrX 156040895 + 72175357 72176794 L1PA6 6164 + 4728 6162 14741 220 2 0 95 0 1 248 2 1 22 0 1 336 0 1 502 3 0 7 chain 52797 chrX 156040895 + 72177973 72178582 SVA_D 2077 + 65 673 19106 143 2 1 464 chain 114391 chrX 156040895 + 72178582 72179991 SVA_E 1901 + 607 1901 16492 47 0 1 162 1 0 26 1 0 37 18 43 42 98 0 130 1 0 33 40 0 773 chain 8409 chrX 156040895 + 72178916 72179013 SVA_D 2077 + 1346 1444 19106 42 0 1 55 chain 3405 chrX 156040895 + 72179178 72179218 SVA_E 1901 + 953 1002 41835 3 3 0 11 0 12 23 chain 14764 chrX 156040895 + 72186104 72186306 MER30 238 + 0 218 62581 105 8 19 47 0 2 23 0 3 19 chain 44363 chrX 156040895 + 72193315 72195046 Tigger3b 1229 + 323 1146 31908 4 0 1 68 0 3 172 0 5 7 0 2 20 1140 209 47 0 4 127 0 10 11 2 0 133 chain 10232 chrX 156040895 + 72198586 72198710 7SLRNA 320 + 19 143 69939 124 chain 55710 chrX 156040895 + 72213161 72213874 LTR17 781 + 0 754 27660 59 1 0 102 1 0 18 1 0 93 0 1 54 1 0 368 2 46 13 chain 39581 chrX 156040895 + 72220390 72220883 LTR19A 502 + 6 502 34972 298 1 0 143 20 24 31 chain 52514 chrX 156040895 + 72227745 72228334 LTR10C 591 + 0 591 28726 510 0 2 79 chain 26221 chrX 156040895 + 72230249 72230604 LTR19A 502 + 146 502 47390 85 9 10 63 1 0 97 2 1 55 13 15 30 chain 23880 chrX 156040895 + 72277572 72277841 AluY 311 + 18 283 50978 100 4 0 165 chain 28652 chrX 156040895 + 72288292 72288644 THE1A 353 + 0 351 43869 110 1 0 241 chain 14068 chrX 156040895 + 72436350 72436613 L1MDa 1598 + 1040 1295 63493 60 0 3 33 20 6 68 43 46 39 chain 301078 chrX 156040895 + 72437041 72440593 L1P3 4156 + 0 3571 6795 251 1 0 69 1 0 89 2 0 1000 0 33 667 0 1 502 0 1 25 11 1 861 3 0 31 0 1 39 chain 552727 chrX 156040895 + 72440593 72446687 L1PA3long 6157 + 49 6149 567 302 5 4 693 1 3 1565 0 1 1325 0 1 414 0 4 822 1 0 966 chain 240108 chrX 156040895 + 72446692 72449580 L1PA7 6471 + 3562 6466 8467 147 3 1 123 8 9 158 1 2 108 1 2 546 10 14 540 0 1 408 1 0 5 0 6 68 0 2 142 0 1 4 1 0 19 0 8 136 10 0 201 0 1 93 1 2 73 0 1 49 0 2 32 chain 53675 chrX 156040895 + 72480393 72481069 L1PA8 5853 + 5179 5853 28334 124 0 3 120 0 2 136 1 0 44 2 0 70 2 1 9 1 0 51 3 2 19 1 0 93 chain 116815 chrX 156040895 + 72489478 72490755 L1PA3long 6157 + 4872 6149 16083 1277 chain 134417 chrX 156040895 + 72500000 72501843 L1PA14 3548 + 1646 3465 13609 141 2 1 65 0 1 115 0 1 280 0 5 235 0 4 37 6 5 118 1 0 5 5 6 23 1 0 250 3 1 14 2 0 48 14 10 12 0 1 4 1 0 82 12 8 13 2 0 6 1 0 84 1 0 110 5 4 6 4 0 35 2 0 15 2 1 4 1 0 19 2 1 39 6 0 10 chain 3633 chrX 156040895 + 72509432 72509476 L1MA10 1535 - 194 238 94164 44 chain 12065 chrX 156040895 + 72509504 72509685 L1MA10 1535 + 1009 1196 66730 18 4 0 23 1 0 17 1 8 55 0 1 12 0 3 50 chain 265348 chrX 156040895 + 72554737 72558801 L1PBa 3878 + 48 3737 7815 12 5 0 7 1 0 4 38 30 43 67 19 50 1 0 9 18 16 14 0 8 34 6 22 207 1 0 143 1 0 294 30 30 234 0 1 91 0 3 95 4 3 39 11 10 139 13 11 53 0 1 24 0 4 498 298 0 96 1 6 10 28 2 141 6 7 7 1 0 77 25 17 152 5 0 42 0 2 154 0 2 121 10 3 19 5 6 160 3 0 36 0 4 51 0 1 228 13 9 166 2 1 21 chain 129571 chrX 156040895 + 72559078 72560578 SVA_B 1603 + 0 1603 14088 19 0 28 120 4 6 23 1 0 461 0 40 93 0 1 73 0 42 15 4 0 40 5 1 14 1 0 627 chain 121918 chrX 156040895 + 72560962 72562667 L1PB1 5432 + 3721 5422 15203 15 0 7 69 0 5 7 1 0 166 4 12 9 1 0 42 9 14 48 0 1 407 0 4 66 0 1 33 3 0 475 0 1 10 4 1 24 1 0 7 1 0 13 8 4 6 2 0 52 2 1 10 28 29 14 10 9 13 2 0 6 16 7 17 2 0 6 1 0 14 2 0 24 1 0 21 1 0 13 2 1 17 chain 508485 chrX 156040895 + 72585451 72591568 L1PA6 6164 + 0 6162 2820 460 6 5 279 13 14 30 3 20 920 1 0 432 0 1 172 0 1 6 2 1 117 0 1 109 0 1 205 0 3 137 12 0 9 0 12 54 0 2 199 0 1 339 1 0 93 0 2 725 10 14 285 1 0 63 0 1 359 0 14 907 11 12 157 chain 143516 chrX 156040895 + 72670442 72672013 L1PA4 6152 + 3495 5066 12806 1571 chain 131955 chrX 156040895 + 72680888 72682944 SVA_F 1814 + 335 1814 13829 498 24 14 8 1 0 25 0 1 11 1 0 56 3 18 294 581 0 554 chain 1079 chrX 156040895 + 72681814 72681864 SVA_F 1814 + 898 948 65609 50 chain 3791 chrX 156040895 + 72681930 72681995 SVA_F 1814 + 1024 1089 42520 65 chain 14859 chrX 156040895 + 72681995 72682336 SVA_F 1814 + 898 1219 40832 49 0 15 39 1 0 126 33 0 43 1 0 17 1 0 27 0 1 4 chain 2350 chrX 156040895 + 72682217 72682243 SVA_F 1814 + 1150 1176 80549 26 chain 1165 chrX 156040895 + 72682336 72682390 SVA_F 1814 + 993 1047 65609 54 chain 183317 chrX 156040895 + 72699566 72702749 MER4-int 2692 + 74 2679 10422 21 1 0 4 2 0 18 9 0 210 7 4 13 14 14 20 11 12 118 0 1 6 1 0 14 9 0 24 0 9 37 1 2 113 2 3 36 0 16 34 9 10 289 1 0 51 1 0 20 1 0 116 1 0 105 1 17 23 1 0 28 5 6 94 1 0 190 1 3 131 1 0 66 301 0 116 0 1 36 1 2 21 1 0 13 14 15 28 2 0 86 7 6 103 300 0 79 5 4 31 1 0 12 1 0 60 0 10 104 chain 32060 chrX 156040895 + 72730656 72731115 LTR7B 505 + 0 503 40300 105 0 10 60 15 22 28 3 27 26 0 2 41 0 2 39 1 0 26 4 5 48 2 1 61 chain 88318 chrX 156040895 + 72733184 72734156 LTR5_Hs 974 + 0 974 19982 183 0 1 383 0 1 406 chain 7216 chrX 156040895 + 72764100 72764193 L1MA4A 3247 + 3040 3132 76894 67 1 0 25 chain 142375 chrX 156040895 + 72766101 72768189 L1PB1 5432 + 3417 5416 12902 166 8 7 132 63 24 762 7 4 5 0 3 25 0 1 4 1 0 76 3 0 51 0 1 30 0 1 85 0 8 72 24 0 11 15 14 195 14 13 7 3 0 17 4 3 11 1 0 11 9 5 7 2 0 52 25 23 37 2 1 15 1 0 4 3 0 13 24 14 5 1 0 14 2 0 27 1 0 15 4 7 9 1 0 12 chain 4481 chrX 156040895 + 72772249 72772306 MER53 195 + 0 57 88434 57 chain 28105 chrX 156040895 + 72833449 72833802 L1PA8 5853 + 5506 5853 44709 58 1 0 44 2 0 70 2 1 61 2 1 19 1 0 93 chain 161342 chrX 156040895 + 72857334 72859271 L1PA7 6471 + 4514 6469 11659 115 0 7 280 4 15 18 1 0 323 0 8 341 8 6 69 0 1 81 3 0 355 1 0 326 2 0 10 chain 504839 chrX 156040895 + 72889430 72895602 L1PA7 6471 + 5 6456 2977 196 11 10 106 23 193 211 4 14 1300 1 0 6 4 3 591 1 2 224 0 87 136 4 0 48 0 1 349 6 4 451 3 0 5 1 4 125 1 0 318 1 11 517 0 11 694 7 5 83 1 0 172 0 5 205 3 0 364 chain 210629 chrX 156040895 + 72906633 72909227 L1PA8A 6298 + 3667 6291 9332 207 1 2 333 0 32 253 1 0 79 10 6 109 0 4 98 1 3 27 2 0 249 0 5 416 6 1 177 1 0 226 1 0 397 chain 226861 chrX 156040895 + 72959705 72962543 L1P2 5180 + 4 2846 8843 146 1 0 44 1 0 50 1 0 125 2 1 76 8 0 60 10 9 48 1 0 224 0 15 462 1 0 217 1 0 1016 0 5 344 chain 93539 chrX 156040895 + 72964913 72965968 L1PA5 6144 + 5087 6141 19107 945 1 0 109 chain 271189 chrX 156040895 + 72965991 72970668 L1PA6 6164 + 2838 6160 7682 67 4 1 276 11 9 89 1351 0 112 1 2 11 0 5 134 0 1 127 0 1 29 15 0 132 2 0 347 0 1 263 0 1 343 0 6 520 1 0 306 5 9 57 1 0 473 chain 495708 chrX 156040895 + 72980715 72986876 L1PA6 6164 + 0 6152 3277 567 1 0 220 0 17 403 14 15 118 5 7 313 5 0 674 44 7 58 8 12 701 0 1 16 0 1 14 0 1 39 6 7 48 1 5 61 2 0 238 1 2 75 0 1 82 0 1 124 7 6 307 4 1 237 0 1 138 0 1 280 50 50 602 18 17 280 0 3 252 7 8 141 chain 99378 chrX 156040895 + 72993357 72995001 L1MA1 4479 + 2586 4189 18367 57 6 8 14 4 3 103 2 0 23 0 1 9 1 0 62 3 0 5 0 1 85 7 6 20 4 2 171 3 1 94 1 0 12 13 8 26 18 14 65 9 7 5 2 0 123 2 0 40 0 1 24 0 1 42 2 0 95 1 0 25 2 0 16 1 0 71 1 0 4 5 6 10 6 4 9 1 0 69 0 1 4 1 0 14 12 8 120 27 32 22 33 27 16 6 1 16 chain 98944 chrX 156040895 + 73010931 73012009 L1PA2 6032 + 4954 6032 18418 1078 chain 79571 chrX 156040895 + 73038947 73039828 L1PA2 6032 + 5154 6032 21729 872 3 0 6 chain 514878 chrX 156040895 + 73052064 73058499 L1PA7 6471 + 0 6468 2525 408 9 0 478 12 16 338 0 1 320 3 2 644 4 16 415 1 2 460 1 5 319 0 10 68 0 1 19 2 1 182 1 2 1096 0 2 601 10 11 56 1 0 130 0 4 16 1 5 653 0 1 42 1 0 144 chain 542413 chrX 156040895 + 73059665 73065811 L1PA3long 6157 + 0 6157 1184 316 9 10 923 2 1 615 0 1 831 2 0 16 0 2 3387 0 10 45 chain 140010 chrX 156040895 + 73067351 73070552 SVA_A 1864 + 21 1862 13097 507 18 18 115 40 0 65 3 0 110 1238 6 45 1 0 5 5 42 12 3 0 56 75 39 103 1 0 62 42 0 36 3 0 26 36 0 594 chain 2117 chrX 156040895 + 73067995 73068031 SVA_A 1864 + 662 698 58662 36 chain 7747 chrX 156040895 + 73068209 73068301 SVA_A 1864 + 533 625 57988 92 chain 2656 chrX 156040895 + 73068636 73068690 SVA_F 1814 + 1032 1083 102685 23 9 7 5 1 0 16 chain 2501 chrX 156040895 + 73069238 73069384 SVA_A 1864 + 633 779 47532 90 0 1 4 4 1 35 2 4 11 chain 4133 chrX 156040895 + 73069388 73069438 SVA_A 1864 + 786 836 90554 50 chain 565500 chrX 156040895 + 73106142 73112170 L1HS 6032 + 0 6028 84 6028 chain 479779 chrX 156040895 + 73116915 73133007 L1PA4 6152 + 6 6143 3639 148 0 1 146 7 8 271 1 0 128 12 5 57 0 128 245 0 2 101 1 0 1440 2 1 484 1 0 1116 0 2 1143 1 0 85 10356 279 347 chain 3498 chrX 156040895 + 73139327 73139365 MER90 571 + 510 548 95260 38 chain 28215 chrX 156040895 + 73175934 73176274 L1PA4 6152 + 4570 4910 44544 340 chain 53701 chrX 156040895 + 73176274 73176885 L1PA4 6152 + 4911 5522 28323 611 chain 195156 chrX 156040895 + 73182087 73184900 L1P3 4156 + 0 2506 9879 251 1 0 69 1 0 779 0 10 5 1 0 199 1 0 46 2 3 164 7 8 352 11 1 261 304 0 149 6 5 204 chain 387211 chrX 156040895 + 73185519 73190686 L1PA7 6471 + 954 6404 5368 84 78 82 126 9 35 68 9 8 4 0 1 69 0 1 4 1 0 21 40 49 254 13 14 77 0 1 148 17 16 589 27 28 302 0 1 303 3 0 4 4 0 284 1 0 309 3 2 375 0 3 157 1 241 597 0 1 27 0 1 193 0 1 187 1 0 181 1 2 199 8 10 208 5 6 80 8 9 88 chain 2407 chrX 156040895 + 73195780 73195816 L1M4c 1769 + 1364 1401 104125 21 1 2 14 chain 10987 chrX 156040895 + 73205684 73205922 L1MC3 1789 + 1097 1299 68570 123 79 46 15 3 0 18 chain 5696 chrX 156040895 + 73220000 73220340 L1M1 2793 + 2350 2685 82359 30 42 44 12 198 192 45 1 0 12 chain 24382 chrX 156040895 + 73222736 73223009 L1P1 4361 + 2160 2433 50196 273 chain 40583 chrX 156040895 + 73226291 73226779 L1P3 4156 + 2744 3229 34236 32 3 0 453 chain 476770 chrX 156040895 + 73229857 73235728 L1PA6 6164 + 14 6161 3700 7 0 13 7 13 0 186 21 14 4 0 1 5 1 0 941 0 1 407 0 1 54 0 1 40 2 259 171 0 1 206 0 1 417 0 3 422 3 4 440 0 1 279 2 1 292 0 5 35 10 11 115 3 7 801 0 5 143 0 1 4 5 9 39 0 1 82 11 7 373 0 1 321 1 0 8 chain 22864 chrX 156040895 + 73246997 73247355 THE1B 368 + 0 368 52553 69 0 1 36 7 6 57 1 0 30 1 0 4 3 0 6 25 40 119 chain 30380 chrX 156040895 + 73280770 73281257 L1PB2 3958 + 2883 3363 41691 41 1 0 174 17 13 69 44 44 83 3 1 55 chain 500527 chrX 156040895 + 73281377 73287188 L1PA4 6152 + 12 5835 3110 18 0 1 690 0 2 711 0 1 300 0 2 408 0 6 2095 1 0 1056 1 0 211 0 1 41 0 1 279 chain 105931 chrX 156040895 + 73291028 73292175 L1PA2 6032 + 4884 6031 17574 1147 chain 11464 chrX 156040895 + 73292280 73292445 L1PB1 5432 + 4686 4852 67806 140 12 13 13 chain 58081 chrX 156040895 + 73294822 73295600 L1PA13 3608 + 872 1664 26938 357 0 1 165 9 9 14 3 1 112 0 15 118 chain 354254 chrX 156040895 + 73306179 73311010 L1PA8 5853 + 108 5853 5867 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73533548 73533931 LTR7 482 + 0 466 46409 101 15 14 13 2 53 41 7 39 46 0 1 158 chain 308198 chrX 156040895 + 73542589 73546602 L1PA7 6471 + 2456 6469 6655 175 26 1 265 6 8 65 5 6 37 2 5 5 3 0 271 7 8 298 4 5 121 3 8 376 0 3 53 5 6 195 17 18 67 5 8 149 0 1 787 17 17 200 0 3 81 0 2 581 1 2 25 1 2 12 0 1 131 5 3 12 chain 345170 chrX 156040895 + 73546602 73551060 L1PA8 5853 + 1347 5822 5980 180 1 2 485 0 4 695 1 2 167 1 0 99 0 2 38 0 1 142 0 3 47 7 0 20 13 14 178 7 8 107 16 16 346 1 3 31 0 1 67 2 1 251 0 1 354 0 1 79 0 5 157 0 5 707 1 0 47 3 5 59 13 11 54 1 0 15 7 6 59 chain 74394 chrX 156040895 + 73596153 73597055 L1PA7 6471 + 4585 5487 22984 724 12 11 29 0 1 137 chain 429568 chrX 156040895 + 73647360 73653261 L1PA8A 6298 + 319 6218 4752 9 8 0 10 9 13 11 1 0 42 2 0 18 1 0 9 6 4 80 8 7 12 2 0 274 4 0 177 16 31 84 0 4 36 6 7 12 0 4 28 1 0 31 20 10 44 15 16 378 19 21 57 1 13 28 1 5 116 0 1 168 5 6 48 21 20 217 0 2 76 0 4 44 5 7 45 1 4 413 0 4 62 1 0 76 0 3 250 1 0 6 0 1 25 0 1 25 4 8 272 11 0 144 0 3 35 0 1 262 0 1 37 59 19 95 5 4 336 9 0 346 0 4 139 1 0 7 0 1 4 1 0 333 0 4 12 1 0 8 12 16 64 1 0 157 0 1 213 8 9 54 8 13 198 chain 309755 chrX 156040895 + 73692795 73696713 L1PA7 6471 + 2437 6395 6614 138 0 2 194 0 4 69 0 3 6 3 0 92 0 1 470 0 1 432 9 13 100 4 0 32 14 8 63 11 16 176 2 3 225 0 1 67 0 1 15 0 1 8 6 5 61 0 1 24 0 8 12 0 2 139 0 1 263 7 8 12 0 2 195 0 1 287 0 4 17 0 7 170 0 4 293 1 0 301 chain 344409 chrX 156040895 + 73696713 73700656 L1PA3long 6157 + 1614 5567 5996 361 0 1 1239 6 5 46 0 3 869 8 13 163 0 1 618 0 1 633 chain 33789 chrX 156040895 + 73701249 73701633 L1PA4 6152 + 5768 6152 38858 384 chain 467331 chrX 156040895 + 73701955 73707534 L1PA6 6164 + 516 6156 3927 43 9 8 126 1 2 390 0 12 49 0 11 289 1 0 171 0 4 206 0 2 80 0 6 104 0 1 172 2 0 21 0 4 117 10 4 506 0 2 153 0 1 187 0 1 118 1 0 209 0 11 162 0 5 5 1 0 664 0 4 946 0 4 448 0 3 247 1 2 140 chain 2978 chrX 156040895 + 73723638 73723681 L1PA8 5853 + 5510 5564 100073 19 1 12 23 chain 4035 chrX 156040895 + 73723682 73723726 L1PA8 5853 + 5564 5608 91192 44 chain 18508 chrX 156040895 + 73723729 73723971 L1PA8 5853 + 5609 5847 58090 73 1 0 6 1 0 52 2 1 19 2 1 86 chain 108131 chrX 156040895 + 73739789 73741071 L1PA7 6471 + 5186 6467 17304 435 1 0 846 chain 5522 chrX 156040895 + 73758432 73758556 LTR43B 570 + 212 377 83144 62 1 41 15 33 34 13 chain 495882 chrX 156040895 + 73767929 73776589 L1PA6 6164 + 4 6162 3272 563 1 0 179 3 4 101 0 2 8 0 1 140 2578 0 252 1 0 326 6 5 748 0 1 27 1 0 5 6 5 748 0 1 50 5 8 15 0 83 246 0 2 382 0 2 63 0 2 289 0 1 90 27 0 9 0 4 949 0 5 74 0 2 8 0 1 421 0 1 329 4 0 6 chain 76221 chrX 156040895 + 73807129 73808174 MER11C 1089 + 0 1063 22507 235 12 23 55 0 4 69 1 0 177 37 36 91 1 5 4 1 0 38 0 1 127 0 1 54 1 0 120 0 1 22 chain 40715 chrX 156040895 + 73881061 73881528 L1PA7 6471 + 6002 6467 34139 457 2 0 8 chain 97422 chrX 156040895 + 73881706 73882849 SVA_B 1603 + 54 1263 18602 15 18 5 768 7 50 5 2 0 27 0 38 301 chain 23508 chrX 156040895 + 73885170 73885448 AluYc 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0 128 5 6 206 0 1 64 0 4 191 0 2 243 0 1 434 0 1 166 305 0 222 1 0 79 0 2 71 0 2 359 0 1 76 1 2 42 1 0 44 2 0 71 1 0 9 1 0 55 1 0 17 3 2 91 chain 165655 chrX 156040895 + 74165720 74168141 SVA_D 2077 + 25 2074 11360 11 0 19 841 12 54 10 0 1 31 0 51 11 0 17 22 1 0 90 49 0 94 0 1 83 0 49 28 502 0 636 chain 1424 chrX 156040895 + 74166751 74166798 SVA_D 2077 + 958 1056 42049 35 0 51 12 chain 31807 chrX 156040895 + 74167015 74167481 SVA_E 1901 + 922 1365 40491 36 2 1 136 1 0 72 86 66 28 1 0 104 chain 3015 chrX 156040895 + 74167262 74167312 SVA_E 1901 + 943 993 48093 50 chain 3484 chrX 156040895 + 74167312 74167348 SVA_E 1901 + 1119 1155 79715 36 chain 38095 chrX 156040895 + 74182018 74182492 LTR3A 482 + 0 482 35994 160 1 10 237 1 0 75 chain 17819 chrX 156040895 + 74190016 74190218 L1PA7 6471 + 6256 6459 58861 28 0 1 174 chain 4894 chrX 156040895 + 74198580 74198647 L1MC2 1988 + 1020 1086 86184 9 1 0 57 chain 11161 chrX 156040895 + 74220281 74220508 Tigger3a 397 + 142 396 68326 105 5 3 15 63 92 39 chain 26891 chrX 156040895 + 74249939 74250412 LTR21A 479 + 0 479 46421 52 24 35 61 24 23 75 9 10 23 1 0 66 0 1 31 0 3 6 24 18 15 1 0 7 0 4 20 10 5 24 chain 12866 chrX 156040895 + 74253904 74254088 LTR9B 643 + 461 643 65317 127 16 14 41 chain 149700 chrX 156040895 + 74257341 74259429 HUERS-P3b-int 2065 + 17 2052 12370 77 3 0 186 8 11 26 0 1 127 24 0 22 1 0 5 0 2 107 7 4 32 0 1 69 4 0 69 1 5 12 0 1 54 1 0 27 1 0 365 0 1 139 1 2 25 0 3 81 1 0 44 4 6 80 2 0 13 1 0 25 1 0 89 3 1 43 0 5 43 4 1 27 1 0 34 5 1 58 1 0 90 32 8 13 chain 25261 chrX 156040895 + 74283731 74284015 AluSc5 308 + 2 290 48848 164 0 4 120 chain 16827 chrX 156040895 + 74285120 74285364 Tigger3a 397 + 42 333 60005 32 16 65 15 0 1 162 3 0 16 chain 3430 chrX 156040895 + 74286343 74286383 MADE1 96 + 56 96 95815 40 chain 10504 chrX 156040895 + 74327971 74328165 L1MA3 4352 + 4137 4326 69413 42 1 0 60 0 1 13 34 31 4 1 0 28 1 0 10 chain 9209 chrX 156040895 + 74369290 74369400 MLT1A1 405 + 296 405 72107 36 1 0 73 chain 61439 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chrX 156040895 + 74861047 74867358 L1PA10 4194 + 633 4161 8035 5 3 0 5 0 3 111 0 1 121 1 0 4 1 2 89 18 16 164 0 2 453 0 1 36 0 4 115 11 12 291 0 3 414 316 21 81 1 2 21 17 18 69 1 10 26 0 1 12 0 3 49 7 0 146 0 15 380 1 0 111 8 42 157 0 2 87 2556 0 106 0 2 101 0 2 167 3 0 34 1 0 11 chain 11192 chrX 156040895 + 74872240 74872382 L1MA3 4352 + 3894 4037 68255 5 0 1 137 chain 508186 chrX 156040895 + 74882161 74887892 L1PA4 6152 + 1 5737 2838 1033 1 0 87 1 2 847 0 1 1552 1 0 1759 0 4 329 0 1 121 chain 33267 chrX 156040895 + 74888318 74888698 L1PA7 6471 + 6086 6466 39291 380 chain 24119 chrX 156040895 + 74908730 74909072 THE1A 353 + 0 341 50621 15 2 0 9 0 1 22 0 1 46 1 0 17 0 2 6 17 15 207 chain 124317 chrX 156040895 + 74909084 74910652 THE1A-int 1579 + 0 1579 14797 113 0 4 381 1 0 4 0 1 395 0 1 163 0 1 30 17 21 234 4 5 226 chain 410769 chrX 156040895 + 74953428 74958004 L1PA3long 6157 + 175 4756 5017 648 3 4 322 0 2 1003 0 1 1958 0 1 642 chain 189932 chrX 156040895 + 74960038 74962209 L1PA5 6144 + 3699 5872 10121 1593 1 2 173 0 1 404 chain 6600 chrX 156040895 + 74973904 74974049 L1PA15 4387 + 4222 4357 78972 40 14 11 27 18 16 17 5 0 24 chain 141672 chrX 156040895 + 74990962 74992477 L1HS 6032 + 4514 6029 12963 1515 chain 7902 chrX 156040895 + 75043079 75043168 L1PA4 6152 + 4564 4653 75106 89 chain 60624 chrX 156040895 + 75043179 75043869 L1PA4 6152 + 4659 5350 26197 649 0 1 41 chain 69223 chrX 156040895 + 75043869 75044655 L1PA4 6152 + 5351 6136 24173 467 2 1 317 chain 25612 chrX 156040895 + 75074263 75074700 L1PA15 4387 + 3925 4356 48298 7 1 0 158 0 3 11 1 0 27 1 0 36 15 11 7 1 0 16 5 1 15 1 0 30 21 29 38 3 1 12 3 1 28 chain 39138 chrX 156040895 + 75116663 75117208 MER41A 554 + 0 554 35257 172 3 1 30 1 0 138 26 16 22 0 22 153 chain 78840 chrX 156040895 + 75120632 75122025 MER41-int 2638 + 1546 2636 21910 122 1 0 250 318 9 100 2 1 63 6 7 20 0 2 16 14 8 69 0 1 11 3 5 122 0 3 40 0 5 236 chain 30951 chrX 156040895 + 75122034 75122417 MER41A 554 + 0 383 41170 383 chain 270485 chrX 156040895 + 75126329 75129597 L1PA7 6471 + 3232 6461 7696 259 10 6 32 0 1 871 1 0 224 38 0 322 1 2 4 1 0 553 0 5 110 2 0 840 chain 95207 chrX 156040895 + 75145029 75146527 L1PA13 3608 + 2161 3548 18880 132 0 3 49 0 3 20 0 2 51 0 1 338 8 0 37 8 9 239 75 0 42 11 12 30 5 4 27 3 0 113 6 4 52 13 6 51 1 0 7 5 3 48 10 6 16 1 0 17 29 21 14 1 0 6 7 1 12 3 0 11 chain 7726 chrX 156040895 + 75202713 75202808 U6 107 + 11 106 75544 95 chain 53400 chrX 156040895 + 75202809 75203447 L1PA10 4194 + 1440 2083 28429 142 0 3 122 0 2 374 chain 29780 chrX 156040895 + 75205088 75205413 AluYb8 318 + 0 318 42259 242 7 0 76 chain 128135 chrX 156040895 + 75217655 75219048 L1PA3long 6157 + 4764 6157 14261 1393 chain 530876 chrX 156040895 + 75231937 75237958 L1PA3long 6157 + 10 6157 1794 141 14 15 401 0 4 210 0 128 981 0 1 1400 0 1 92 1 0 331 10 0 1370 0 1 598 0 1 472 chain 510626 chrX 156040895 + 75247137 75253027 L1PA4 6152 + 44 5976 2742 197 2 1 243 0 3 87 0 4 322 0 9 241 0 5 910 1 2 252 7 6 2307 1 2 614 0 21 706 chain 304305 chrX 156040895 + 75257795 75267586 L1PA5 6144 + 4 6144 6732 131 17 31 53 438 208 36 19 0 51 158 61 9 0 12 32 34 38 86 32 11 55 0 17 118 39 14 173 38 29 52 3 16 62 63 64 189 0 2 120 0 4 31 1 0 41 1 0 313 0 2 168 0 1 14 0 2 63 2 1 266 8 7 4 0 1 578 1 0 18 0 87 218 4 0 185 1 0 15 0 2 172 4849 1435 478 1 13 351 chain 97143 chrX 156040895 + 75261907 75263144 L1P2 5180 + 1615 2832 18643 393 0 1 318 21 0 505 chain 263956 chrX 156040895 + 75267599 75270914 L1PA7 6471 + 3146 6467 7857 338 14 13 47 1 5 1122 0 4 270 4 5 639 8 9 23 1 0 510 1 0 163 25 26 141 2 0 6 chain 114006 chrX 156040895 + 75270929 75272722 L1PB1 5432 + 3727 5420 16550 59 0 1 59 0 1 133 23 40 116 11 12 16 0 4 441 11 12 180 1 0 78 0 11 4 0 1 187 137 34 22 1 0 9 1 0 6 9 5 9 2 0 53 2 1 16 1 0 18 1 0 26 1 0 12 17 4 30 3 1 4 1 0 14 3 1 22 2 1 21 1 0 13 1 0 16 chain 41531 chrX 156040895 + 75323193 75323703 MER9a3 513 + 0 513 33661 17 0 2 160 0 1 78 1 0 175 1 2 78 chain 166504 chrX 156040895 + 75324286 75329359 HERVK9-int 4720 + 145 4720 11306 17 2 1 719 2978 2476 193 3 4 888 8 11 40 0 1 225 chain 38885 chrX 156040895 + 75329360 75329861 MER9a3 513 + 1 513 35443 12 0 2 69 16 17 78 0 1 76 1 0 56 0 7 114 5 6 74 chain 24000 chrX 156040895 + 75346467 75346821 THE1B 368 + 0 368 50791 13 2 0 24 0 5 57 7 11 59 8 7 130 8 16 46 chain 127470 chrX 156040895 + 75364549 75366631 MER41-int 2638 + 371 2632 14357 84 0 4 98 0 2 121 1 0 32 1 0 15 0 2 74 1 0 6 237 403 85 4 7 18 1 0 1 1 0 48 8 10 41 0 3 120 0 2 33 5 8 82 1 0 215 0 2 28 5 2 6 0 2 29 58 41 100 1 0 92 3 4 35 0 2 138 0 1 26 0 4 5 1 0 42 1 9 179 chain 25981 chrX 156040895 + 75374081 75374394 L1PA7 6471 + 6160 6467 47746 202 5 1 96 2 0 8 chain 227903 chrX 156040895 + 75400789 75404434 L1PA14 3548 + 90 3456 8813 58 3 0 69 1 0 6 47 45 31 2 0 6 204 0 7 58 0 325 0 2 79 1 0 86 0 2 247 0 1 5 8 7 203 11 10 115 1 0 102 1 0 4 1 2 60 0 1 55 0 3 57 0 4 109 15 16 36 0 1 4 0 3 71 0 2 47 20 10 216 1 0 5 1 2 36 1 10 665 4 6 13 9 7 12 2 0 48 8 4 105 2 0 5 20 16 6 1 0 61 24 23 95 34 29 34 4 2 12 1 0 5 5 4 11 1 0 43 chain 99187 chrX 156040895 + 75406978 75408226 SVA_B 1603 + 316 1603 18388 134 0 116 52 0 37 223 109 0 43 4 0 55 1 0 627 chain 115856 chrX 156040895 + 75418557 75420961 L1PA7 6471 + 5051 6469 16267 127 0 9 428 996 0 6 2 0 516 1 2 234 1 3 93 chain 3292 chrX 156040895 + 75430423 75430533 L1MC3 1789 + 1288 1386 97088 23 54 43 23 1 0 9 chain 158205 chrX 156040895 + 75442263 75444628 L1PA5 6144 + 4092 6144 11860 249 0 4 152 539 226 46 5 0 341 0 1 1033 chain 354541 chrX 156040895 + 75451827 75456511 L1PA6 6164 + 1944 6161 5861 246 0 1 134 8 0 210 0 1 228 0 3 137 0 4 117 1 0 164 0 1 33 1 0 25 9 1 21 0 3 322 0 3 105 1 0 92 0 1 42 1 0 494 0 1 37 0 4 45 483 0 766 0 1 106 0 4 92 0 1 98 1 11 658 2 0 5 chain 321739 chrX 156040895 + 75460764 75466373 L1PA11 4918 + 3 4578 6371 36 9 7 34 1 0 4 3 1 8 0 2 19 1 0 13 3 1 52 1 0 33 2 0 5 2 1 233 0 4 14 26 28 241 0 1 8 5 7 101 0 1 32 22 23 360 0 1 195 0 5 340 0 1 23 0 1 357 2 1 12 2 0 19 0 5 8 0 4 85 0 1 57 0 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588 0 6 224 0 3 76 0 2 235 1 0 512 chain 14480 chrX 156040895 + 77550258 77550415 L1PA5 6144 + 3773 3930 62918 157 chain 128888 chrX 156040895 + 77550416 77551867 L1PA5 6144 + 3932 5381 14166 353 0 1 619 2 0 386 1 0 90 chain 57087 chrX 156040895 + 77555149 77555870 L1PA8 5853 + 5134 5853 27240 46 1 0 72 0 4 264 0 1 43 1 0 44 2 0 66 6 5 9 1 0 52 2 1 19 1 0 53 0 1 39 chain 14930 chrX 156040895 + 77612365 77612584 L1PA8 5853 + 5638 5853 62351 37 5 4 8 2 1 56 1 0 3 1 0 4 0 1 11 1 0 90 chain 231189 chrX 156040895 + 77622855 77626427 L1PB1 5432 + 2262 5424 8718 6 0 1 126 1 6 93 8 0 49 1 0 299 1 0 47 1 4 65 8 14 97 1 0 328 0 1 4 2 1 71 0 4 7 326 0 53 8 10 174 37 18 209 2 4 114 6 5 556 4 0 176 3 11 288 59 11 24 1 0 9 17 12 10 3 0 4 0 1 46 3 2 15 1 0 40 6 5 14 56 41 9 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 13572 chrX 156040895 + 77685092 77685382 L1MA1 4479 + 3917 4191 64214 27 15 11 12 5 6 105 1 0 15 0 1 8 7 5 32 31 27 6 7 0 19 chain 4467 chrX 156040895 + 77705537 77705591 L1MB7 1623 + 343 397 88512 54 chain 2971 chrX 156040895 + 77714648 77714681 L1MC4 1079 + 695 728 100185 33 chain 310672 chrX 156040895 + 77719449 77723275 L1PA7 6471 + 2571 6404 6597 69 1 2 155 1 2 297 0 4 445 14 18 955 0 2 145 5 9 281 3 0 421 3 1 120 20 7 37 10 10 69 2 1 389 0 2 295 9 17 80 chain 63460 chrX 156040895 + 77725151 77725857 L1PA5 6144 + 4662 5367 25533 632 1 0 73 chain 69002 chrX 156040895 + 77725857 77726631 L1PA5 6144 + 5368 6142 24210 774 chain 4450 chrX 156040895 + 77726927 77726977 L1PA7 6471 + 5552 5602 88608 50 chain 6299 chrX 156040895 + 77726985 77727072 L1PA7 6471 + 5617 5700 79998 10 4 0 73 chain 50377 chrX 156040895 + 77727072 77727666 L1PA7 6471 + 5702 6295 29418 435 1 0 158 chain 13390 chrX 156040895 + 77727667 77727841 L1PA7 6471 + 6298 6467 64486 163 5 0 6 chain 10728 chrX 156040895 + 77730155 77730297 L1M1 2793 + 2533 2674 68993 95 1 0 46 chain 23728 chrX 156040895 + 77760337 77760628 L1PA2 6032 + 5743 6031 51231 123 5 0 7 3 1 96 0 4 57 chain 32823 chrX 156040895 + 77823313 77823798 MLT2A2 560 + 0 502 39649 7 0 6 81 1 0 65 49 51 141 0 2 45 9 20 14 3 0 70 chain 27234 chrX 156040895 + 77825161 77825562 MSTA 426 + 1 411 45917 80 9 12 66 6 10 23 21 23 196 chain 15395 chrX 156040895 + 77834652 77834895 L1MA1 4479 + 3900 4136 61786 46 1 0 6 3 0 114 13 12 22 11 9 27 chain 8112 chrX 156040895 + 77837299 77837395 U6 107 + 11 107 74609 96 chain 4747 chrX 156040895 + 77862771 77862829 MER83 447 + 319 377 86977 58 chain 5390 chrX 156040895 + 77867720 77867778 LTR40b 463 + 377 435 83745 58 chain 54369 chrX 156040895 + 77868955 77870036 L1PB2 3958 + 3058 3838 28093 74 285 0 175 2 0 54 1 0 11 11 6 61 4 21 25 1 7 51 50 25 28 1 0 21 1 0 62 1 0 74 2 0 22 1 0 63 chain 47236 chrX 156040895 + 77881854 77882391 L1P1 4361 + 3689 4225 30558 461 1 0 75 chain 17098 chrX 156040895 + 77956410 77956726 MSTB 430 + 26 391 59698 117 0 13 45 7 12 13 45 73 14 14 17 61 chain 15665 chrX 156040895 + 77962245 77962532 MER51B 395 + 66 387 61446 31 6 6 6 0 7 50 11 28 16 26 25 10 1 0 51 4 16 75 chain 4886 chrX 156040895 + 77985525 77985644 MER3 215 + 21 147 86227 17 48 55 54 chain 24489 chrX 156040895 + 78043990 78044275 AluSp 311 + 18 303 50047 285 chain 65730 chrX 156040895 + 78058409 78059111 L1HS 6032 + 5088 5790 25026 702 chain 5514 chrX 156040895 + 78136239 78136435 L1MC4 1079 + 35 229 83181 34 116 114 46 chain 118370 chrX 156040895 + 78147334 78148906 THE1B-int 1605 + 1 1605 15823 11 4 6 414 0 25 191 0 1 361 0 13 12 27 14 65 23 25 58 1 2 4 1 0 327 0 2 73 chain 284543 chrX 156040895 + 78158072 78162886 L1PBa1 4058 + 12 4040 7300 20 21 17 6 1 0 249 1 0 23 3 0 11 2 5 87 14 11 109 3 2 10 6 5 23 4 5 27 0 7 64 5 6 113 5 6 151 21 21 103 31 30 14 5 7 37 14 17 253 1 0 10 0 1 109 0 1 89 0 3 259 9 7 6 0 1 166 1 2 267 0 1 24 2 3 59 1 0 4 5 13 58 0 3 99 471 0 166 1 2 504 312 10 117 1 0 51 1 7 58 1 0 4 10 4 102 7 6 5 1 0 29 2 1 40 2 0 42 1 0 66 3 1 15 1 0 14 7 0 15 2 0 17 16 11 18 1 0 12 12 9 5 1 0 5 1 0 10 1 0 16 1 0 42 chain 283999 chrX 156040895 + 78176143 78179658 L1P1 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chrX 156040895 + 78306681 78306758 MIRb 242 + 61 141 84730 5 0 1 38 4 6 30 chain 65179 chrX 156040895 + 78316633 78317599 L1PB2 3958 + 2869 3821 25137 5 1 0 4 1 0 46 1 0 40 0 1 183 17 19 140 2 0 43 1 2 8 2 1 13 5 0 65 3 1 12 4 0 78 0 5 5 1 0 77 1 0 52 11 10 74 2 0 22 1 0 46 chain 23827 chrX 156040895 + 78321416 78321705 AluSp 311 + 8 297 51057 289 chain 6189 chrX 156040895 + 78328936 78329007 LTR5B 1012 + 13 84 80391 71 chain 271287 chrX 156040895 + 78342813 78346295 L1P2 5180 + 1661 5171 7678 186 10 11 149 11 12 187 0 2 111 1 0 714 0 2 195 0 4 202 1 0 4 0 1 80 0 1 111 0 1 263 0 2 23 23 24 208 0 1 478 1 2 335 8 9 22 0 1 18 0 1 14 0 11 41 1 0 48 1 0 36 chain 12220 chrX 156040895 + 78390011 78390199 L1MA1 4479 + 3741 3923 66438 14 2 1 70 1 0 19 2 0 14 1 0 19 2 1 44 chain 21988 chrX 156040895 + 78402797 78403056 L1PA11 4918 + 949 1208 53851 259 chain 445760 chrX 156040895 + 78409862 78414779 L1PA2 6032 + 1108 6032 4462 1345 0 3 112 0 1 3175 0 3 285 chain 108876 chrX 156040895 + 78511953 78513473 L1PB1 5432 + 3766 5272 17201 263 1 2 115 18 22 453 0 2 9 4 0 349 1 0 117 5 4 14 7 1 27 1 0 12 2 0 3 2 0 6 6 4 51 2 1 15 1 0 36 chain 23798 chrX 156040895 + 78535662 78535922 L1PA5 6144 + 5877 6137 51112 260 chain 323021 chrX 156040895 + 78549325 78552982 L1P1 4361 + 651 4321 6356 104 5 7 654 0 5 2137 1 0 101 0 1 112 0 1 212 0 3 26 0 4 132 1 0 155 1 0 16 chain 3016 chrX 156040895 + 78554323 78554356 HSMAR2 1300 + 773 806 99679 33 chain 33880 chrX 156040895 + 78581122 78581560 L1PA7 6471 + 6028 6470 38800 194 11 10 80 0 2 6 0 1 135 0 2 12 chain 32046 chrX 156040895 + 78581628 78582063 L1PA8 5853 + 5424 5853 40313 140 1 0 44 5 4 67 1 0 5 5 4 40 14 13 21 1 0 91 chain 5079 chrX 156040895 + 78599676 78599739 L1PA16 3655 + 2015 2078 85253 63 chain 35706 chrX 156040895 + 78599775 78600413 L1PB1 5432 + 4815 5424 37599 283 18 16 20 1 0 12 24 21 53 2 1 16 1 0 38 6 5 12 27 16 19 8 5 14 3 1 23 1 0 22 1 0 12 1 0 16 1 0 4 chain 11660 chrX 156040895 + 78681212 78681388 THE1D 372 + 0 167 67459 56 31 22 89 chain 184281 chrX 156040895 + 78695611 78697848 L1PA7 6471 + 4246 6465 10370 425 0 4 700 0 1 546 18 0 381 8 9 143 6 0 10 chain 139083 chrX 156040895 + 78718773 78720334 L1PA3long 6157 + 4600 6157 13177 652 4 0 905 chain 64174 chrX 156040895 + 78765249 78765950 SVA_D 2077 + 1278 2077 25375 30 0 98 671 chain 36918 chrX 156040895 + 78786448 78786902 MER9a3 513 + 15 470 36798 96 0 1 144 1 0 177 2 3 34 chain 103592 chrX 156040895 + 78805150 78806325 L1PA3long 6157 + 2212 3386 17865 114 7 5 834 0 1 220 chain 17678 chrX 156040895 + 78806364 78806580 THE1C-int 1605 + 1376 1592 59035 216 chain 10995 chrX 156040895 + 78816990 78817218 L1MA3 4352 + 4129 4322 68562 88 17 13 4 0 1 23 2 0 24 8 6 23 28 0 11 chain 34392 chrX 156040895 + 78839061 78839654 MER4A1_ 611 + 4 607 38436 41 0 1 76 0 2 86 3 0 47 17 0 15 0 23 86 29 34 17 2 0 6 50 52 106 1 0 11 chain 27886 chrX 156040895 + 78861461 78861940 L1M1 2793 + 803 1271 45056 26 22 19 45 53 47 62 1 0 59 0 1 118 1 0 6 4 7 55 4 0 23 chain 63770 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254 5 7 160 8 7 385 1 0 49 2 0 68 1 0 61 2 1 19 1 0 93 chain 27281 chrX 156040895 + 79105829 79106155 L1PA8 5853 + 5214 5540 45851 326 chain 10229 chrX 156040895 + 79106155 79106294 L1PA8 5853 + 5541 5679 69947 23 1 0 31 0 2 11 2 0 71 chain 3119 chrX 156040895 + 79106295 79106357 L1PA8 5853 + 5679 5740 98632 14 13 12 35 chain 9729 chrX 156040895 + 79106359 79106472 L1PA8 5853 + 5741 5853 70983 19 1 0 93 chain 10864 chrX 156040895 + 79177897 79178088 L1MA1 4479 + 4009 4186 68753 66 4 3 29 2 0 35 1 0 9 11 8 13 7 0 14 chain 28463 chrX 156040895 + 79193646 79193998 L1PA8 5853 + 4634 4987 44178 248 0 1 104 chain 9992 chrX 156040895 + 79194007 79194133 L1PA8 5853 + 4997 5122 70440 12 2 0 84 0 1 28 chain 373113 chrX 156040895 + 79196565 79201431 L1PA7 6471 + 1595 6466 5601 97 0 1 16 0 1 244 0 1 515 0 60 114 11 12 33 16 13 396 7 14 432 15 16 418 5 3 27 0 2 85 1 0 141 1 0 869 4 0 323 1 0 69 68 9 111 0 7 291 0 12 13 42 20 9 0 1 115 0 2 49 0 1 14 0 1 104 5 4 47 2 3 156 chain 75501 chrX 156040895 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18 20 4 0 1 151 chain 62501 chrX 156040895 + 79456212 79457085 LTR12 884 + 1 884 25754 118 0 25 127 0 67 26 0 22 341 105 1 156 chain 4946 chrX 156040895 + 79456855 79456929 LTR12 884 + 788 861 83308 54 1 0 19 chain 26299 chrX 156040895 + 79467675 79468048 L1PA8 5853 + 5486 5853 47270 34 1 2 42 1 0 49 2 0 66 1 0 8 0 6 6 8 1 40 2 1 22 1 0 90 chain 425880 chrX 156040895 + 79493866 79509459 L1PA4 6152 + 25 5519 4799 96 9 23 327 0 4 484 25 0 215 9 0 284 0 50 453 0 1 6 1 0 233 0 2 76 9 0 36 9 10 4 1 0 768 0 12 66 1 3 31 0 1 241 10148 0 489 0 1 50 0 3 34 0 3 604 16 15 14 0 1 155 0 1 555 9 8 135 chain 58991 chrX 156040895 + 79497577 79498305 L1PA4 6152 + 3779 4500 26670 237 11 3 249 0 1 231 chain 11337 chrX 156040895 + 79500298 79500499 L1MA1 4479 + 3874 4074 68023 12 1 3 47 41 38 100 chain 28949 chrX 156040895 + 79504712 79505019 AluYa5 310 + 0 306 43406 132 1 0 174 chain 3952 chrX 156040895 + 79507342 79507386 L1PA4 6152 + 3381 3425 91750 44 chain 134174 chrX 156040895 + 79513050 79514868 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171 1 2 385 6 4 73 0 1 305 0 2 169 1 0 31 0 7 6 9 0 60 23 21 7 1 0 4 0 1 39 2 1 19 1 0 91 chain 14149 chrX 156040895 + 79948596 79948943 L1PB1 5432 + 5118 5430 63380 20 11 8 12 5 1 9 6 4 48 18 16 32 1 0 11 2 1 16 1 0 4 23 12 15 2 0 4 1 0 15 2 0 24 1 0 21 1 0 13 2 1 13 1 0 5 1 0 7 chain 39999 chrX 156040895 + 79955890 79956442 LTR17 781 + 255 781 34658 44 10 0 27 0 1 68 36 18 360 0 1 7 chain 365427 chrX 156040895 + 79958155 79962455 HERV17-int 4347 + 12 4347 5729 14 2 1 51 1 0 34 2 0 27 1 0 156 5 0 79 0 2 46 0 1 250 1 2 203 0 1 290 0 3 154 0 16 172 0 1 699 0 12 22 0 1 894 1 0 4 0 1 164 0 4 234 4 5 71 0 1 316 0 5 10 5 0 329 0 1 59 chain 27163 chrX 156040895 + 79962769 79963094 LTR17 781 + 0 324 46020 119 0 9 171 10 0 25 chain 57211 chrX 156040895 + 79988365 79989004 L1HS 6032 + 1889 2528 27190 639 chain 55288 chrX 156040895 + 80001210 80001839 L1P1 4361 + 3705 4328 27783 73 4 0 372 1 0 155 1 0 23 chain 5801 chrX 156040895 + 80005205 80005282 L1MD2 1676 + 1578 1654 81916 27 1 0 49 chain 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65 15 1 353 0 1 108 4 1 412 0 4 16 0 1 1213 0 4 441 0 1 262 0 1 42 3 2 38 2 12 10 1 6 522 0 1 313 chain 55453 chrX 156040895 + 80295613 80296230 L1PA4 6152 + 5535 6152 27733 473 0 1 138 1 0 5 chain 44008 chrX 156040895 + 80312133 80312694 LTR19B 566 + 0 566 32124 94 0 5 83 0 1 115 1 0 80 0 1 45 1 0 22 20 22 90 2 0 8 chain 17752 chrX 156040895 + 80317782 80317988 LTR19B 566 + 0 206 58948 206 chain 515086 chrX 156040895 + 80319278 80325569 L1PA6 6164 + 2 6151 2517 355 0 1 151 2 1 205 11 0 125 0 1 413 0 2 124 0 2 76 12 7 517 146 0 133 1 0 282 0 4 475 0 1 306 4 5 82 0 1 346 0 2 1376 0 2 71 0 1 321 0 1 728 3 6 26 chain 17583 chrX 156040895 + 80332451 80332648 L1PA7 6471 + 6255 6452 59141 197 chain 62949 chrX 156040895 + 80357687 80358396 L1PA4 6152 + 4513 5221 25643 122 1 0 59 0 1 4 1 0 522 chain 41356 chrX 156040895 + 80359004 80359489 L1PA7 6471 + 5660 6149 33757 213 0 4 272 chain 24939 chrX 156040895 + 80359489 80359783 L1PA7 6471 + 6163 6457 49368 294 chain 185753 chrX 156040895 + 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chrX 156040895 + 82583453 82583751 L1PA7 6471 + 6174 6469 49506 285 3 0 10 chain 17067 chrX 156040895 + 82619932 82620125 L1PA3long 6157 + 5960 6153 59734 193 chain 38009 chrX 156040895 + 82622317 82622793 L1PA11 4918 + 2725 3203 36066 307 0 2 169 chain 45836 chrX 156040895 + 82714380 82714903 L1P1 4361 + 3498 4024 31135 487 0 3 36 chain 32134 chrX 156040895 + 82726765 82727190 LTR7B 505 + 0 498 40239 108 0 10 57 0 38 12 3 27 28 0 2 80 1 0 26 0 1 52 11 10 47 chain 66668 chrX 156040895 + 82730232 82731085 HERVH-int 3825 + 2970 3825 24781 46 1 0 345 5 6 331 0 1 12 4 5 109 chain 31333 chrX 156040895 + 82732517 82732940 LTR7B 505 + 0 496 40860 108 0 10 66 6 68 26 0 2 82 1 0 26 0 1 52 11 10 45 chain 34553 chrX 156040895 + 82745767 82746240 LTR2B 499 + 9 499 38315 5 1 0 60 3 0 37 0 19 103 5 7 54 8 9 14 1 0 182 chain 36122 chrX 156040895 + 82756311 82756806 LTR10F 562 + 0 559 37328 38 0 2 67 1 85 40 25 0 32 4 5 283 0 2 5 chain 31666 chrX 156040895 + 82787817 82788269 THE1B-int 1605 + 0 406 40611 27 6 7 198 47 0 174 chain 464510 chrX 156040895 + 82788276 82794208 L1PA6 6164 + 2 5922 4006 447 19 0 118 1 0 218 2 19 99 0 4 9 0 1 5 1 0 517 7 9 594 1 0 11 19 15 177 26 0 80 12 0 864 1 2 80 0 3 42 0 1 189 0 2 195 5 3 350 0 1 10 0 1 122 0 1 84 0 3 84 0 4 283 1 0 129 0 2 93 0 1 262 2 3 52 13 8 41 0 9 69 0 4 376 5 7 217 chain 127685 chrX 156040895 + 82811873 82813427 L1PA7 6471 + 4915 6466 14331 281 8 1 222 0 1 200 0 4 834 1 0 8 chain 253348 chrX 156040895 + 82856479 82859238 L1PA2 6032 + 3275 6032 8150 2744 2 0 13 chain 3753 chrX 156040895 + 82860898 82860939 MSTD-int 1705 + 1446 1487 93220 41 chain 5086 chrX 156040895 + 82882536 82882595 MER41B 635 + 482 542 85219 29 0 1 30 chain 16765 chrX 156040895 + 82891070 82891539 L1PB1 5432 + 5059 5396 60072 44 92 0 12 11 0 23 1 0 8 1 0 12 5 1 8 2 0 53 2 1 10 6 5 15 0 2 28 30 16 30 8 5 14 6 4 20 1 0 21 1 0 5 chain 103804 chrX 156040895 + 82903296 82904434 L1PA4 6152 + 5014 6151 17839 1117 1 0 20 chain 325028 chrX 156040895 + 82946358 82950643 L1PA8A 6298 + 1984 6291 6308 404 0 2 120 23 1 423 4 0 47 0 1 369 5 6 14 0 1 12 0 6 8 15 19 33 3 4 27 1 0 54 0 1 323 12 13 229 9 30 60 6 7 167 0 1 73 14 10 28 0 2 554 0 1 109 3 2 112 0 1 64 0 1 169 0 3 84 0 1 424 0 4 235 2 0 5 0 2 41 chain 74884 chrX 156040895 + 82954442 82955257 L1PA3long 6157 + 5342 6157 22871 815 chain 178520 chrX 156040895 + 82994527 82996583 L1PA5 6144 + 4073 6135 10657 17 0 2 370 0 3 856 3 4 810 chain 29649 chrX 156040895 + 82996595 82996950 L1P1 4361 + 3166 3521 42430 114 1 0 230 0 1 10 chain 60006 chrX 156040895 + 83001209 83001888 L1PA4 6152 + 5472 6151 26369 679 chain 52875 chrX 156040895 + 83030348 83030932 L1PA4 6152 + 5567 6151 28611 584 chain 75511 chrX 156040895 + 83070434 83071299 MER11D 897 + 0 897 22713 4 0 1 278 3 0 66 0 10 214 0 23 187 0 1 113 chain 43690 chrX 156040895 + 83082016 83082539 L1PA7 6471 + 5944 6468 32327 363 5 6 155 chain 64707 chrX 156040895 + 83085729 83086485 L1P1 4361 + 3184 3940 25264 756 chain 234619 chrX 156040895 + 83094921 83097635 L1PA5 6144 + 3432 6141 8612 2163 5 0 546 chain 404126 chrX 156040895 + 83152083 83157325 L1PA8 5853 + 111 5853 5103 187 22 10 109 3 7 37 1 2 58 2 13 99 7 1 130 15 10 174 0 1 16 18 16 5 0 2 333 3 8 730 0 15 253 10 459 88 3 0 220 2 1 5 0 31 78 5 4 172 3 8 415 0 1 57 0 4 84 5 6 255 4 3 113 13 14 99 0 3 101 0 1 459 0 5 348 3 0 64 1 2 137 1 0 43 2 0 75 1 0 6 1 0 52 2 1 19 2 1 92 chain 178539 chrX 156040895 + 83211341 83213568 L1PA6 6164 + 3980 6162 10655 383 1 2 195 0 1 4 1 0 258 0 1 82 22 17 436 44 0 561 1 3 239 chain 8614 chrX 156040895 + 83232485 83232585 L1PBa1 4058 + 2962 3062 73421 100 chain 18396 chrX 156040895 + 83247111 83247334 L1PA5 6144 + 5911 6135 58248 74 1 2 148 chain 4227 chrX 156040895 + 83266132 83266182 L1PA11 4918 + 3971 4021 89957 50 chain 496677 chrX 156040895 + 83286302 83301900 L1PA3long 6157 + 4 6157 3241 577 0 1 123 1 8 727 0 1 146 3 5 735 0 1 942 0 1 417 2 1 469 9 10 74 0 1 114 0 4 90 0 15 1358 9474 0 62 3 0 265 1 0 6 chain 67952 chrX 156040895 + 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L1MA3 4352 + 2267 2410 68705 47 1 0 96 chain 516995 chrX 156040895 + 83407138 83413200 L1PA5 6144 + 0 6144 2419 513 0 22 160 55 57 413 5 34 1107 0 1 812 1 5 376 0 1 181 3 0 269 0 1 406 0 22 599 0 1 91 5 6 216 0 1 850 chain 84451 chrX 156040895 + 83431988 83433042 MER11C 1089 + 0 1073 20725 246 0 9 62 0 4 367 0 4 7 1 0 38 0 1 127 0 1 23 0 1 30 1 0 142 0 1 10 chain 62883 chrX 156040895 + 83441734 83442443 L1PA4 6152 + 4811 5520 25659 709 chain 45719 chrX 156040895 + 83457708 83458557 L1PB2 3958 + 2969 3835 31202 98 5 10 82 0 1 37 6 0 6 49 56 32 29 44 28 1 0 14 13 9 47 8 6 13 4 0 81 28 35 48 2 1 64 1 0 61 9 11 22 7 6 54 chain 14150 chrX 156040895 + 83487751 83487905 L1PA2 6032 + 5873 6027 63377 154 chain 14874 chrX 156040895 + 83493816 83494048 MER1B 344 + 103 338 62420 85 1 0 28 4 0 37 24 32 53 chain 565679 chrX 156040895 + 83542396 83548420 L1HS 6032 + 2 6030 79 5180 0 4 844 chain 86932 chrX 156040895 + 83567976 83568925 L1PA2 6032 + 5080 6030 20243 6 0 1 943 chain 15561 chrX 156040895 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135987 chrX 156040895 + 83955676 83957474 L1P3 4156 + 2326 4139 13436 301 5 7 436 1 0 27 0 4 102 0 1 63 27 35 49 0 1 84 0 4 126 2 1 17 2 0 398 0 1 18 5 6 100 2 0 7 2 1 24 chain 44333 chrX 156040895 + 83978640 83979433 L1PB2 3958 + 3061 3838 31928 17 10 12 41 2 1 161 16 14 56 1 0 4 0 4 6 47 44 18 4 1 4 0 1 7 5 0 92 2 1 46 2 0 15 12 11 64 2 1 71 2 0 20 14 13 52 chain 31623 chrX 156040895 + 84001387 84001884 PRIMA4_LTR 623 + 0 611 40644 175 18 41 30 16 24 98 0 1 5 17 97 75 7 9 56 chain 391230 chrX 156040895 + 84008829 84013658 L1PA6 6164 + 0 6159 5302 204 0 1 45 0 1 316 1 0 671 1 0 150 1 2 56 2 0 19 1 2 858 14 0 197 6 1 13 0 1 265 0 2 38 5 0 6 15 19 315 10 12 112 1 0 823 0 2 48 0 2 93 1 1360 199 0 1 217 40 22 86 chain 27247 chrX 156040895 + 84048761 84049074 L1PA5 6144 + 5735 6048 45897 313 chain 20016 chrX 156040895 + 84052673 84052916 THE1B-int 1605 + 1362 1605 56369 243 chain 309120 chrX 156040895 + 84066444 84070559 L1PA8 5853 + 50 5853 6632 22 2 0 10 1 0 12 50 14 45 6 10 39 0 1 101 9 0 715 0 2 84 19 24 45 2 1 19 20 24 235 1 0 189 6 5 21 0 1 68 1 3 132 4 1695 28 0 2 63 4 5 34 0 4 167 0 1 242 0 7 13 1 0 55 0 2 819 0 2 66 0 1 50 2 1 4 0 1 222 1 2 156 0 15 33 1 0 50 2 0 59 10 9 60 2 1 19 1 0 93 chain 206628 chrX 156040895 + 84079021 84081780 L1P3 4156 + 6 4137 9480 93 6 4 142 20 19 57 1 0 45 7 5 25 0 3 5 11 0 416 0 1 212 47 0 278 9 1407 168 7 11 555 0 5 26 0 1 62 0 4 262 0 1 132 0 1 28 27 47 36 0 1 49 11 8 22 chain 11870 chrX 156040895 + 84092634 84092937 L1MA6 2487 + 1976 2271 67070 23 91 89 50 0 10 63 37 21 39 chain 9101 chrX 156040895 + 84133074 84133203 MER85 139 + 0 139 72344 76 13 23 40 chain 38437 chrX 156040895 + 84190729 84191367 THE1C-int 1605 + 2 624 35764 93 0 57 12 3 0 79 0 4 44 0 1 30 1 0 88 120 46 168 chain 5083 chrX 156040895 + 84230002 84230059 L1PA6 6164 + 5951 6008 85233 57 chain 12141 chrX 156040895 + 84230059 84230211 L1PA6 6164 + 6009 6162 66584 143 0 1 9 chain 3926 chrX 156040895 + 84238097 84238140 L1PB2 3958 + 3795 3838 91940 43 chain 5202 chrX 156040895 + 84261099 84261162 MIR 256 + 165 228 84667 63 chain 116653 chrX 156040895 + 84272834 84276802 L1PB1 5432 + 2924 5422 16112 4 0 1 77 0 5 116 0 1 28 7 8 151 1 2 57 0 1 83 0 1 51 2162 710 225 1 2 110 1 2 58 1 3 6 13 0 73 0 1 403 9 6 5 1 0 20 1 0 12 1 0 10 18 12 52 2 1 15 1 0 39 75 71 24 1 0 22 1 0 10 5 4 16 chain 29498 chrX 156040895 + 84355527 84355863 L1PA5 6144 + 5802 6138 42611 336 chain 182381 chrX 156040895 + 84365802 84367999 L1PA7 6471 + 4277 6459 10477 210 1 2 340 0 1 379 23 7 404 2 1 81 2 1 592 6 5 20 0 2 137 chain 227348 chrX 156040895 + 84373375 84375904 L1PA3long 6157 + 3610 6157 8835 214 0 1 971 0 16 945 0 1 399 chain 300631 chrX 156040895 + 84398135 84402209 L1PA8 5853 + 1750 5853 6809 70 0 1 197 0 2 104 1 4 8 2 3 140 0 3 625 0 1 25 1 5 49 1 0 139 0 1 94 1 0 157 15 17 315 1 0 50 0 6 120 0 4 182 6 7 125 1 0 10 0 1 119 0 1 626 1 0 7 3 0 35 9 6 73 0 2 70 23 24 285 17 17 24 0 1 13 0 11 35 1 0 6 8 9 28 3 1 70 2 1 11 1 0 50 2 1 19 1 0 93 chain 81428 chrX 156040895 + 84408987 84409882 L1PA4 6152 + 5255 6151 21350 753 0 1 142 chain 31106 chrX 156040895 + 84435239 84436405 L1PA2 6032 + 4836 6032 41053 510 6 0 616 0 36 34 chain 8722 chrX 156040895 + 84459020 84459128 L1MA3 4352 + 874 982 73167 108 chain 142185 chrX 156040895 + 84464138 84465824 L1PA7 6471 + 4773 6464 12922 120 4 3 420 0 1 297 0 3 221 0 1 118 0 1 349 0 7 7 7 0 143 chain 41013 chrX 156040895 + 84537731 84538193 L1PA5 6144 + 5678 6144 33961 6 0 4 456 chain 15314 chrX 156040895 + 84544266 84544452 L1PA7 6471 + 6279 6465 61892 186 chain 63164 chrX 156040895 + 84548204 84548910 L1PA3long 6157 + 5283 5990 25586 130 0 1 576 chain 534934 chrX 156040895 + 84555548 84561686 L1PA5 6144 + 11 6144 1623 113 14 0 2340 0 1 752 0 1 466 0 1 265 0 2 327 0 2 376 6 7 1026 4 4 116 0 1 333 chain 515647 chrX 156040895 + 84571182 84577685 L1PA7 6471 + 0 6459 2488 92 5 6 99 0 1 5 1 0 33 1 0 158 11 12 114 4 3 378 5 8 66 0 1 585 4 0 198 1 0 145 1 0 733 1 0 4 29 6 313 26 5 554 5 4 754 0 2 212 2 0 54 8 5 695 0 11 46 0 1 318 1 0 103 1 2 31 11 2 250 0 2 126 0 1 164 22 23 134 chain 157959 chrX 156040895 + 84592142 84594641 L1PA10 4194 + 175 2602 11883 11 5 3 10 3 0 8 2 0 9 22 16 9 1 0 9 1 0 18 8 6 12 1 0 4 59 33 12 2 0 18 1 0 10 1 0 7 1 0 13 7 5 6 4 0 4 1 0 5 1 0 79 3 2 274 22 27 111 20 20 229 31 0 195 1 0 282 22 26 350 3 4 176 15 18 23 0 7 55 18 22 199 2 1 39 7 5 8 8 0 10 7 12 25 chain 3699 chrX 156040895 + 84599935 84599976 L1PA7 6471 + 5580 5621 93611 41 chain 72062 chrX 156040895 + 84599977 84600823 L1PA7 6471 + 5621 6464 23521 616 1 0 83 0 1 138 3 0 5 chain 3106 chrX 156040895 + 84618822 84618857 MER5A 189 + 35 70 98731 35 chain 2784 chrX 156040895 + 84694295 84694329 L1MA8 2339 + 2299 2333 101731 34 chain 4277 chrX 156040895 + 84697928 84697980 HERVL-int 5654 + 111 163 89642 52 chain 215593 chrX 156040895 + 84700359 84702806 L1PA4 6152 + 3291 5726 9156 1338 1 0 656 12 0 137 0 2 186 1 0 116 chain 27923 chrX 156040895 + 84738499 84738949 LTR21A 479 + 0 479 44995 22 2 0 34 4 1 7 1 0 11 0 3 97 1 0 82 0 3 44 24 51 39 0 4 27 7 9 15 9 6 24 chain 6683 chrX 156040895 + 84741383 84741947 HERVFH21-int 991 + 490 856 78695 42 9 7 13 397 224 13 21 3 17 6 2 8 1 0 37 chain 27635 chrX 156040895 + 84761855 84762178 LTR17 781 + 0 324 45410 165 0 1 158 chain 79656 chrX 156040895 + 84806797 84807823 L1PA8A 6298 + 5268 6291 21705 221 2 1 78 6 5 576 0 1 17 7 5 119 chain 225605 chrX 156040895 + 84816816 84819299 L1PA3long 6157 + 3673 6157 8869 2335 0 1 148 chain 32845 chrX 156040895 + 84836028 84836473 MLT2A1 477 + 0 477 39633 168 5 2 9 0 1 24 0 1 58 1 0 120 23 57 37 chain 32920 chrX 156040895 + 84843697 84844069 L1PA6 6164 + 5790 6162 39573 372 chain 62913 chrX 156040895 + 84848225 84849209 L1PA14 3548 + 2387 3413 25654 64 4 5 81 1 0 43 6 5 103 1 0 79 1 70 101 3 1 8 0 1 5 2 0 26 1 0 22 2 0 4 2 0 105 20 16 5 2 0 6 1 0 84 2 1 109 25 20 28 4 2 12 1 0 5 1 0 15 chain 77171 chrX 156040895 + 84850867 84851875 MER11A 1151 + 0 1151 22268 61 1 100 133 0 2 92 0 1 23 0 1 260 10 14 132 6 40 58 0 1 41 8 10 116 1 0 66 chain 38387 chrX 156040895 + 84869005 84869469 L1PA5 6144 + 4722 5187 35792 173 1 2 78 1 2 139 1 0 71 chain 40654 chrX 156040895 + 84869469 84869941 L1PA5 6144 + 5671 6144 34187 330 0 1 142 chain 19002 chrX 156040895 + 84870462 84870691 L1PA5 6144 + 5764 5988 57549 218 5 0 6 chain 10880 chrX 156040895 + 84870703 84870830 L1PA5 6144 + 6005 6132 68726 127 chain 54635 chrX 156040895 + 84883612 84884390 THE1-int 844 + 1 772 27999 18 1 0 22 2 1 13 1 0 51 1 0 20 1 0 124 0 1 438 31 52 6 24 0 25 chain 22517 chrX 156040895 + 84941522 84941808 AluSq10 312 + 19 304 53101 156 9 8 121 chain 39412 chrX 156040895 + 84944683 84945142 LTR2 463 + 0 463 35067 129 0 3 132 0 1 198 chain 422889 chrX 156040895 + 84946965 84952022 Harlequin-int 5206 + 144 5206 4840 162 2 5 45 4 9 117 1 0 165 0 1 4 1 0 30 1 0 47 1 2 115 0 1 19 1 0 67 1 0 4 0 1 211 2 6 244 0 1 152 4 0 392 2 0 500 0 2 545 0 1 957 0 2 173 11 4 101 1 0 304 7 0 7 4 11 246 1 0 269 1 4 136 chain 1151 chrX 156040895 + 84952022 84952107 LTR2 463 + 0 85 37616 85 chain 177448 chrX 156040895 + 84952116 84954079 L1PA4 6152 + 4007 5971 10704 1376 0 1 587 chain 5062 chrX 156040895 + 84954283 84954657 LTR2 463 + 85 463 37616 44 0 3 136 0 1 194 chain 48431 chrX 156040895 + 84959184 84959801 LTR10C 591 + 0 591 30138 198 4 2 316 25 1 74 chain 4172 chrX 156040895 + 84959924 84959981 L1PREC2 3366 + 2990 3046 90317 22 1 0 34 chain 11175 chrX 156040895 + 84975387 84975527 LTR12C 1709 + 877 1017 68297 140 chain 22482 chrX 156040895 + 84979159 84979442 AluSp 311 + 28 310 53145 102 2 0 97 0 1 82 chain 84102 chrX 156040895 + 84993497 84994460 L1P1 4361 + 3382 4341 20779 4 1 0 764 1 0 155 1 0 23 2 1 12 chain 77657 chrX 156040895 + 84996681 84997611 L1PA7 6471 + 5538 6470 22170 84 0 2 846 chain 32091 chrX 156040895 + 85029644 85030142 L1PB2 3958 + 3338 3838 40282 20 0 3 13 3 0 54 11 16 8 4 0 61 0 1 31 24 23 37 0 4 8 1 0 62 1 0 66 0 2 6 2 0 22 1 0 63 chain 18660 chrX 156040895 + 85037218 85037566 THE1B 368 + 0 368 57934 76 26 41 57 64 69 125 chain 550885 chrX 156040895 + 85146837 85152984 L1PA3long 6157 + 6 6157 687 1016 1 0 427 0 9 867 6 7 364 6 7 2299 0 1 1148 7 0 6 chain 28699 chrX 156040895 + 85190788 85191123 L1PA5 6144 + 5805 6138 43800 167 2 0 166 chain 36559 chrX 156040895 + 85194588 85195020 L1PA7 6471 + 6025 6457 37036 432 chain 30108 chrX 156040895 + 85254322 85254643 AluYb8 318 + 0 318 41935 123 3 0 195 chain 37695 chrX 156040895 + 85257863 85258513 L1PB1 5432 + 4787 5422 36276 18 0 8 238 2 0 52 6 10 25 1 0 6 1 0 12 17 12 49 0 2 8 12 11 27 0 1 16 2 1 18 65 49 20 1 0 22 1 0 12 1 0 18 chain 164534 chrX 156040895 + 85283923 85285806 L1PA5 6144 + 4247 6139 11453 200 0 3 933 1 0 45 15 22 689 chain 36201 chrX 156040895 + 85320258 85320655 L1PA3long 6157 + 2810 3208 37268 378 0 1 19 chain 267349 chrX 156040895 + 85320657 85323605 L1PA3long 6157 + 3209 6157 7779 2948 chain 13011 chrX 156040895 + 85343039 85343196 L1PA7 6471 + 6309 6466 65101 14 0 1 89 1 0 53 chain 173813 chrX 156040895 + 85354517 85356467 L1PA5 6144 + 4192 6144 10905 1808 0 3 29 1 0 112 chain 8694 chrX 156040895 + 85389516 85389629 MER85 139 + 15 139 73223 55 0 1 17 1 11 40 chain 129902 chrX 156040895 + 85405552 85407102 L1PA7 6471 + 1715 3264 14051 380 4 0 67 1 6 463 1 2 60 5 2 569 chain 24885 chrX 156040895 + 85470004 85470361 THE1B 368 + 0 368 49466 44 0 15 113 2 1 27 13 9 18 8 9 132 chain 21188 chrX 156040895 + 85521826 85522205 THE1D 372 + 2 372 54907 54 26 17 165 5 11 14 5 1 38 42 40 30 chain 537279 chrX 156040895 + 85529213 85535228 L1PA3long 6157 + 4 6157 1496 59 7 8 81 0 1 615 5 136 253 5 8 2529 0 3 2127 1 0 333 chain 6201 chrX 156040895 + 85577902 85577973 MER21A 919 + 503 574 80353 71 chain 500580 chrX 156040895 + 85583168 85589029 L1PA5 6144 + 0 5873 3108 270 1 0 203 14 15 235 3 1 309 0 1 1014 3 6 256 7 0 847 0 12 150 0 4 177 0 1 369 0 1 1038 1 0 964 chain 38226 chrX 156040895 + 85623612 85624074 LTR2 463 + 0 463 35892 362 12 13 88 chain 3271 chrX 156040895 + 85631762 85631798 L1PB 1623 - 436 472 97277 36 chain 10231 chrX 156040895 + 85631801 85631931 L1PB 1623 + 474 603 69941 13 1 0 116 chain 49694 chrX 156040895 + 85662734 85663347 L1PA7 6471 + 5852 6457 29690 117 10 9 78 0 1 250 9 1 15 0 1 8 1 0 125 chain 45897 chrX 156040895 + 85670693 85671212 L1PA3long 6157 + 5635 6154 31107 519 chain 32844 chrX 156040895 + 85685142 85685562 L1PB1 5432 + 4049 4461 39634 190 8 0 222 chain 131979 chrX 156040895 + 85702053 85703712 L1PA6 6164 + 3720 6156 13826 204 0 745 4 0 1 415 9 9 256 0 11 482 0 1 95 5 9 46 4 19 139 chain 16546 chrX 156040895 + 85706644 85706872 L1MA1 4479 + 1814 2041 60312 137 19 18 72 chain 46112 chrX 156040895 + 85713008 85713534 L1PA5 6144 + 3972 4500 31010 71 0 1 128 0 1 327 chain 151380 chrX 156040895 + 85717813 85720147 L1PA7 6471 + 4120 6465 12263 258 0 16 238 0 2 321 1 0 229 0 1 206 1 10 218 3 0 5 22 11 68 1 0 256 3 1 176 0 1 22 0 2 298 2 0 6 chain 68855 chrX 156040895 + 85733685 85734499 L1HS 6032 + 77 894 24246 174 6 5 324 0 4 310 chain 141256 chrX 156040895 + 85740894 85742851 L1P2 5180 + 2016 3952 13005 311 26 0 5 1 2 51 7 1 33 0 1 323 8 7 36 0 4 136 0 3 303 12 16 202 55 54 448 chain 115490 chrX 156040895 + 85817092 85818948 HUERS-P3b-int 2065 + 13 1764 16312 81 4 0 59 23 26 90 9 8 18 4 0 11 76 8 92 4 5 29 0 4 118 2 3 13 3 0 118 0 1 63 0 2 12 1 0 54 1 0 20 3 1 205 0 1 22 4 3 10 0 1 19 4 0 109 1 2 211 116 91 78 2 0 13 1 0 80 1 0 34 3 1 35 chain 415885 chrX 156040895 + 85822090 85827566 L1PB1 5432 + 20 5420 4941 530 1 0 52 2 0 473 0 1 91 0 2 226 1 0 8 10 0 307 2 1 99 1 0 443 1 0 124 5 9 119 8 0 56 3 0 176 2 0 105 2 0 49 0 1 434 1 2 49 0 1 344 35 17 509 2 1 139 0 1 187 3 2 48 4 0 172 1 0 216 7 9 80 0 3 8 1 0 24 1 0 8 1 0 12 5 1 8 2 0 53 18 16 45 1 0 15 3 0 6 50 35 9 2 0 24 1 0 21 1 0 13 1 0 16 chain 103005 chrX 156040895 + 85847062 85848298 L1PA7 6471 + 5244 6468 17951 213 0 1 156 0 3 496 20 0 195 8 12 148 chain 44172 chrX 156040895 + 85854170 85854672 L1PA7 6471 + 5964 6466 32035 502 chain 122867 chrX 156040895 + 85865510 85867082 THE1D-int 1627 + 0 1611 15043 15 0 2 13 0 1 6 1 0 613 0 31 7 0 1 13 12 15 580 0 3 123 0 1 119 2 0 68 chain 24621 chrX 156040895 + 85887153 85887508 THE1B 368 + 0 368 49835 44 6 21 108 1 0 27 2 0 38 9 12 45 2 0 73 chain 56119 chrX 156040895 + 85887508 85888273 THE1B-int 1605 + 0 791 27530 421 9 34 172 11 10 48 17 19 87 chain 25495 chrX 156040895 + 85890384 85890738 THE1A 353 + 0 353 48489 109 2 1 92 7 6 46 15 16 83 chain 122221 chrX 156040895 + 85890752 85892292 THE1A-int 1579 + 14 1574 15159 72 1 0 388 10 16 181 13 19 94 0 1 286 3 0 19 4 11 294 1 0 99 0 5 75 chain 63248 chrX 156040895 + 85915139 85916156 L1PA13 3608 + 2377 3548 25571 70 0 180 202 0 2 102 5 6 29 0 1 16 0 1 118 6 7 21 1 0 28 1 0 85 0 1 13 16 14 62 1 0 12 11 9 30 13 10 47 2 0 5 2 0 20 2 1 13 0 3 12 18 7 14 1 0 4 23 14 12 chain 139283 chrX 156040895 + 85987542 85989592 L1PA14 3548 + 1453 3485 13160 81 0 2 6 0 7 8 9 2 242 1 2 44 1 0 45 0 6 104 8 7 167 0 2 160 0 3 122 6 7 59 6 7 153 1 0 81 1 3 10 2 1 153 2 0 11 6 5 47 2 0 6 3 1 102 13 9 13 2 0 6 1 0 79 6 5 111 1 0 11 5 1 35 4 2 12 1 0 5 1 0 17 2 1 39 6 0 10 1 0 20 chain 506930 chrX 156040895 + 86002434 86008415 L1PA6 6164 + 2 6162 2891 193 0 1 4 1 0 23 0 165 38 0 1 91 0 2 47 1 0 475 6 7 1164 0 2 111 1 0 947 0 2 722 0 1 367 0 4 949 0 4 779 1 0 61 chain 20937 chrX 156040895 + 86009941 86010183 L1PA6 6164 + 5759 6002 55213 72 0 1 170 chain 13343 chrX 156040895 + 86010209 86010361 L1PA6 6164 + 6010 6162 64558 152 chain 22663 chrX 156040895 + 86015108 86015439 THE1A 353 + 0 346 52878 44 6 21 44 23 22 13 0 1 201 chain 117779 chrX 156040895 + 86015446 86017323 THE1A-int 1579 + 0 1570 15920 33 0 1 136 1 0 5 2 3 227 314 0 89 15 20 122 49 52 404 0 1 141 3 0 336 chain 24549 chrX 156040895 + 86017332 86017687 THE1A 353 + 0 353 49949 15 2 0 33 0 1 40 37 36 228 chain 8179 chrX 156040895 + 86019607 86019712 HY3 101 + 0 99 74465 72 6 0 27 chain 3198 chrX 156040895 + 86020724 86020759 Tigger4b 360 + 313 348 97915 35 chain 97522 chrX 156040895 + 86067363 86069805 L1PA11 4918 + 3135 4629 18583 63 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55 1 0 22 4 0 11 1 0 35 20 17 46 2 0 10 10 5 21 0 1 4 1 0 9 chain 230093 chrX 156040895 + 86196743 86200024 L1PA13 3608 + 218 3443 8745 68 7 5 125 1 0 12 1 0 17 2 0 16 6 2 18 1 0 17 12 10 8 2 0 16 1 0 99 3 1 193 8 9 158 4 3 52 3 0 72 9 5 117 0 6 243 1 0 347 12 4 162 17 25 796 0 1 120 1 2 119 3 6 60 1 0 16 34 0 11 6 5 109 2 0 61 1 0 22 1 0 40 9 7 17 2 3 20 chain 39834 chrX 156040895 + 86252879 86253382 L1PB1 5432 + 3427 3922 34790 301 6 0 8 2 0 186 chain 96436 chrX 156040895 + 86277345 86278611 HSMAR1 1287 + 4 1274 18723 120 0 1 224 1 3 165 6 7 40 1 0 94 0 3 6 12 9 74 10 8 399 0 4 86 1 0 27 chain 387427 chrX 156040895 + 86278644 86283870 L1PA7 6471 + 399 6457 5364 12 0 2 614 0 1 89 0 2 55 0 10 103 0 14 89 0 1 169 0 1 160 1 67 621 0 2 222 13 15 256 0 2 143 11 961 763 25 26 186 9 7 329 0 13 96 4 79 39 15 14 55 5 4 38 312 0 141 1 0 136 0 1 54 0 1 236 0 2 77 1 2 12 9 8 33 0 3 92 chain 443521 chrX 156040895 + 86306832 86312455 HERVL-int 5654 + 0 5654 4506 20 5 0 280 0 1 823 1 0 255 39 36 148 1 16 358 0 1 263 1 0 54 0 1 402 0 2 6 22 23 93 0 11 108 11 15 17 1 2 110 2 1 74 0 1 358 4 0 9 0 1 54 10 8 73 5 0 24 6 8 827 6 10 813 13 14 20 0 4 80 0 1 5 0 1 96 1 0 4 0 1 115 0 1 6 chain 214758 chrX 156040895 + 86336380 86339183 L1P2 5180 + 760 3611 9183 16 7 22 142 22 42 468 1 0 6 0 1 481 12 27 397 6 0 73 0 3 340 9 12 80 4 0 401 0 2 338 chain 75330 chrX 156040895 + 86354024 86354832 L1HS 6032 + 5224 6032 22763 808 chain 25934 chrX 156040895 + 86445234 86445521 L1HS 6032 + 5745 6028 47813 276 4 0 7 chain 5679 chrX 156040895 + 86458809 86458877 L1PA7 6471 + 6249 6317 82433 68 chain 12553 chrX 156040895 + 86458878 86459024 L1PA7 6471 + 6319 6465 65895 146 chain 104952 chrX 156040895 + 86463371 86464685 L1PA8 5853 + 4541 5853 17694 465 5 7 70 1 3 434 0 1 43 1 0 45 2 0 69 2 1 15 7 6 40 2 1 19 1 0 93 chain 5034 chrX 156040895 + 86471788 86471889 L1MA8 2339 + 2163 2256 85493 31 6 0 12 5 0 8 0 5 15 3 1 21 chain 33963 chrX 156040895 + 86482772 86483151 L1PA2 6032 + 5651 6032 38734 229 0 2 150 chain 11212 chrX 156040895 + 86502764 86502966 MER30 238 + 0 238 68229 23 37 38 48 0 31 56 3 7 35 chain 129970 chrX 156040895 + 86560504 86561913 L1PA2 6032 + 4623 6031 14044 1395 1 0 13 chain 18195 chrX 156040895 + 86572039 86572250 L1PA5 6144 + 5930 6141 58466 211 chain 65383 chrX 156040895 + 86687269 86688050 L1PA7 6471 + 5686 6468 25093 14 2 3 765 chain 12789 chrX 156040895 + 86705084 86705430 L1PB1 5432 + 5106 5422 65457 8 1 0 21 1 0 7 35 28 50 27 25 36 1 0 15 22 12 16 3 1 7 1 0 5 13 11 22 1 0 20 1 0 14 2 1 17 chain 23996 chrX 156040895 + 86751108 86751542 L1PREC2 3366 + 1710 2093 50801 12 21 12 23 23 25 103 9 10 81 45 0 117 chain 24260 chrX 156040895 + 86761389 86761682 L1PA8 5853 + 5186 5479 50404 293 chain 25825 chrX 156040895 + 86786804 86787158 THE1B 368 + 0 368 47984 43 19 34 99 1 0 192 chain 13804 chrX 156040895 + 86799390 86799562 L1P3 4156 + 0 172 63878 172 chain 18278 chrX 156040895 + 86862196 86862397 L1PA2 6032 + 5819 6020 58388 201 chain 229527 chrX 156040895 + 86872071 86875020 HERVL-int 5654 + 24 3000 8757 267 8 7 112 1 5 104 7 8 34 0 25 802 11 0 282 17 18 164 0 1 262 1 2 159 5 8 196 0 4 479 1 0 37 chain 20643 chrX 156040895 + 86906996 86907295 L1MA2 4263 + 3756 4050 55568 36 17 14 151 1 0 8 1 0 85 chain 3693 chrX 156040895 + 86912966 86913050 MER4D 903 + 620 706 93658 43 28 30 13 chain 30165 chrX 156040895 + 86964608 86965038 L1PA7 6471 + 6050 6469 41876 35 9 1 218 4 12 10 19 11 120 3 0 12 chain 552319 chrX 156040895 + 86969631 86975651 L1PA2 6032 + 7 6029 593 1583 1 0 4 0 1 3073 0 2 1359 chain 4101 chrX 156040895 + 86980679 86980727 L1MA9 1812 + 476 524 90761 48 chain 27650 chrX 156040895 + 86981883 86982284 LTR7 482 + 0 482 45394 44 33 71 109 0 1 38 1 32 21 0 10 38 2 3 115 chain 287133 chrX 156040895 + 86982286 86985839 HERVH-int 3825 + 0 3825 7223 333 1 0 197 1 0 11 1 0 4 11 12 13 1 0 9 2 1 12 11 39 14 14 11 35 0 20 68 1 0 457 16 1 448 4 31 299 0 10 1045 9 11 39 8 218 244 4 0 16 0 2 225 chain 23615 chrX 156040895 + 86987086 86987479 LTR7 482 + 0 474 51403 69 29 17 15 15 14 17 5 56 36 0 1 38 1 32 19 0 10 41 1 2 107 chain 30320 chrX 156040895 + 86995683 86996263 L1M1 2793 + 1221 1757 41741 22 2 0 5 2 0 15 50 38 8 0 1 34 30 30 250 11 3 45 50 27 35 0 2 21 chain 12233 chrX 156040895 + 87027379 87027526 THE1D 372 + 225 372 66413 147 chain 278842 chrX 156040895 + 87112398 87115656 L1PA6 6164 + 2900 6162 7458 389 0 1 15 0 1 176 1 2 2259 0 1 418 chain 550376 chrX 156040895 + 87116306 87122337 L1PA2 6032 + 0 6030 717 252 5 4 5774 chain 305257 chrX 156040895 + 87128335 87132227 L1P3 4156 + 16 4142 6719 61 0 1 150 4 0 8 13 27 57 1 0 798 3 16 24 0 1 109 4 6 101 0 1 393 1 5 924 2 1 196 13 220 403 0 1 12 1 0 85 1 0 4 0 1 200 5 6 171 2 1 108 2 0 9 2 1 25 chain 18384 chrX 156040895 + 87166811 87167015 L1PA2 6032 + 5828 6032 58258 204 chain 117195 chrX 156040895 + 87177120 87178543 L1PA7 6471 + 5045 6468 16022 19 1 0 550 2 4 20 0 1 61 2 3 183 1 2 573 4 0 7 chain 132144 chrX 156040895 + 87220563 87222033 L1PA3long 6157 + 4679 6152 13817 628 0 1 699 1 3 142 chain 27668 chrX 156040895 + 87222812 87223194 MLT2A1 477 + 0 385 45374 17 0 4 135 21 18 5 0 1 23 1 2 180 chain 380354 chrX 156040895 + 87223278 87228183 HERVL-int 5654 + 6 5654 5478 97 3 2 549 1 0 14 25 7 7 0 18 238 16 11 169 1 0 106 0 1 418 18 756 249 0 2 39 0 1 5 2 1 801 6 8 264 44 56 971 1 0 427 8 6 334 1 0 91 chain 30132 chrX 156040895 + 87228187 87228564 MLT2A1 477 + 4 381 41907 165 4 1 9 0 1 24 3 5 172 chain 440660 chrX 156040895 + 87254358 87259773 L1PA7 6471 + 1109 6466 4566 149 0 3 490 1 0 461 7 8 257 0 1 163 2 0 442 40 5 424 2 1 32 10 14 47 0 1 402 1 0 244 0 1 193 28 0 304 0 1 768 1 2 99 1 0 127 0 1 705 3 0 12 chain 4620 chrX 156040895 + 87266201 87266280 Tigger1 2417 + 2154 2233 87698 17 8 9 4 1 0 49 chain 25996 chrX 156040895 + 87278642 87278961 L1P1 4361 + 3316 3635 47722 319 chain 66748 chrX 156040895 + 87295495 87296256 L1PA4 6152 + 5398 6143 24759 183 18 2 560 chain 53804 chrX 156040895 + 87314054 87314815 MER4-int 2692 + 1919 2692 28283 31 4 9 61 0 3 100 1 0 18 12 13 31 2 0 82 1 0 199 14 13 16 1 0 15 1 0 54 0 10 97 6 5 9 0 1 6 chain 17373 chrX 156040895 + 87322824 87323026 L1PA2 6032 + 5814 6009 59391 61 7 0 134 chain 35107 chrX 156040895 + 87347408 87347798 L1PA3long 6157 + 5768 6157 37952 186 1 0 203 chain 41990 chrX 156040895 + 87364387 87364864 MER9a3 513 + 14 491 33362 477 chain 21257 chrX 156040895 + 87382618 87382966 THE1B-int 1605 + 1338 1600 54815 179 86 0 83 chain 4619 chrX 156040895 + 87382817 87382873 THE1B-int 1605 + 1538 1594 87708 56 chain 21116 chrX 156040895 + 87382971 87383326 THE1B 368 + 0 357 54989 13 2 0 27 9 14 19 47 48 51 2 1 120 1 0 64 chain 3729 chrX 156040895 + 87409662 87409701 LTR25 836 + 401 440 93412 39 chain 9501 chrX 156040895 + 87418386 87418506 L1PB1 5432 + 4965 5085 71470 120 chain 92316 chrX 156040895 + 87465823 87466882 SVA_C 1631 + 507 1631 19297 211 4 1 118 0 42 124 0 1 10 0 25 592 chain 48531 chrX 156040895 + 87468147 87468863 L1PB2 3958 + 123 817 30109 15 2 0 29 17 11 52 3 0 200 4 0 5 7 0 3 1 0 5 0 1 107 6 5 39 0 4 7 4 0 76 0 1 134 chain 95439 chrX 156040895 + 87500505 87501566 L1PA3long 6157 + 5089 6150 18852 1061 chain 9015 chrX 156040895 + 87501711 87501852 MLT1B 390 + 233 377 72527 20 7 9 66 3 4 45 chain 31918 chrX 156040895 + 87514503 87514884 MLT2A1 477 + 0 385 40396 140 0 1 28 0 4 150 1 0 62 chain 3446 chrX 156040895 + 87523624 87523665 L1MC3 1789 + 1334 1375 95680 41 chain 18590 chrX 156040895 + 87531455 87531667 L1P1 4361 + 4106 4316 58006 44 1 0 155 1 0 11 chain 82325 chrX 156040895 + 87532818 87533714 L1PA3long 6157 + 5261 6157 21170 896 chain 29065 chrX 156040895 + 87542454 87542863 THE1D-int 1627 + 1233 1609 43239 110 33 0 266 chain 28024 chrX 156040895 + 87545653 87546028 THE1C-int 1605 + 33 490 44827 77 0 54 238 26 54 34 chain 45086 chrX 156040895 + 87556179 87556678 L1PA3long 6157 + 5654 6151 31539 258 2 0 239 chain 12267 chrX 156040895 + 87565931 87566073 L1PA8A 6298 + 6149 6291 66340 142 chain 21160 chrX 156040895 + 87575193 87575489 MER1B 344 + 50 344 54932 167 4 0 49 18 20 58 chain 211278 chrX 156040895 + 87643069 87646018 L1PB1 5432 + 2460 5400 9310 73 0 5 72 13 16 18 20 29 148 1 0 21 2 0 132 0 5 214 11 13 56 1 2 468 2 0 288 3 4 141 1 5 135 0 1 320 3 0 82 0 1 394 1 2 8 4 1 24 1 0 5 21 16 8 2 0 53 2 1 9 8 7 43 1 0 25 17 4 18 8 5 14 2 0 24 1 0 21 1 0 9 chain 8042 chrX 156040895 + 87646052 87646149 L1PB1 5432 + 3626 3723 74773 97 chain 9727 chrX 156040895 + 87646162 87646281 L1PB1 5432 + 3732 3852 70986 4 0 1 115 chain 53606 chrX 156040895 + 87646281 87647004 L1PB1 5432 + 3853 4579 28358 476 7 2 37 4 5 100 0 5 85 0 2 14 chain 9438 chrX 156040895 + 87647004 87647127 L1PB1 5432 + 4587 4707 71620 41 3 0 79 chain 28679 chrX 156040895 + 87647130 87647524 L1PB1 5432 + 4709 5098 43833 128 0 1 4 1 0 10 0 1 208 1 2 9 8 1 25 chain 11400 chrX 156040895 + 87647529 87647722 L1PB1 5432 + 5110 5296 67913 24 1 0 10 1 0 14 8 4 6 2 0 52 14 16 45 1 0 15 chain 3693 chrX 156040895 + 87647767 87647820 L1PB1 5432 + 5345 5396 93656 25 1 0 22 1 0 4 chain 48622 chrX 156040895 + 87680719 87681403 LTR30 714 + 0 704 30080 253 0 5 71 5 6 108 7 18 149 1 2 12 0 1 5 25 24 18 2 5 14 1 0 13 chain 39118 chrX 156040895 + 87681679 87682129 LTR7 482 + 0 482 35272 45 1 2 217 0 31 187 chain 296326 chrX 156040895 + 87682131 87685931 HERVH-int 3825 + 0 3823 6939 219 0 1 309 143 16 25 2 1 8 2 1 10 4 0 13 7 1 15 1 0 11 27 1 17 30 8 42 2 1 18 26 13 49 1 0 39 0 1 404 15 0 92 0 1 125 0 1 239 8 35 1404 8 218 485 chain 40865 chrX 156040895 + 87687193 87687644 LTR7 482 + 0 482 34049 264 0 31 187 chain 26283 chrX 156040895 + 87688958 87689266 L1PA5 6144 + 5838 6144 47300 297 2 0 9 chain 4650 chrX 156040895 + 87691201 87691256 L1PA16 3655 + 2513 2568 87532 55 chain 328936 chrX 156040895 + 87778114 87782214 L1P3 4156 + 0 4114 6233 251 1 0 68 2 1 125 3 4 163 1 0 242 1 0 353 0 4 140 0 2 5 3 0 460 1 2 318 0 1 173 8 7 308 8 5 122 0 4 133 0 1 293 0 1 110 10 20 287 0 1 491 0 1 11 2 0 7 chain 562803 chrX 156040895 + 87821407 87827419 L1HS 6032 + 0 6028 131 486 1 0 251 0 16 145 1 0 2541 0 1 621 0 1 1966 chain 81047 chrX 156040895 + 87828696 87829590 L1PA4 6152 + 4575 5469 21427 894 chain 6659 chrX 156040895 + 87853474 87853558 L1PA8 5853 + 5711 5793 78776 32 1 0 17 1 0 33 chain 16854 chrX 156040895 + 87853622 87853842 L1PA8 5853 + 5637 5853 59968 42 1 0 9 1 0 56 1 0 16 1 0 93 chain 4111 chrX 156040895 + 87860265 87860313 L1P3 4156 + 2580 2628 90696 48 chain 16835 chrX 156040895 + 87860314 87860510 L1P3 4156 + 2630 2827 59992 30 0 1 166 chain 119913 chrX 156040895 + 87870537 87871873 L1PA4 6152 + 4641 5976 15552 1251 1 0 84 chain 32171 chrX 156040895 + 87876329 87876717 HERVL-int 5654 + 2615 3003 40218 388 chain 206156 chrX 156040895 + 87876717 87879293 HERVL-int 5654 + 1777 4369 9500 261 0 10 13 20 4 138 0 3 185 0 4 295 0 1 225 0 6 113 2 16 414 11 0 37 0 4 96 0 1 766 chain 7609 chrX 156040895 + 87902745 87902951 MER4B 649 + 243 460 75846 67 71 88 23 2 0 5 18 14 20 chain 47338 chrX 156040895 + 87954803 87955360 L1PA7 6471 + 5911 6468 30526 225 0 1 102 0 1 221 2 0 7 chain 126726 chrX 156040895 + 88009210 88010762 L1P3 4156 + 2592 4139 14445 896 4 3 245 1 0 371 2 0 7 2 1 24 chain 39198 chrX 156040895 + 88074183 88074627 L1PA6 6164 + 5712 6156 35216 444 chain 2880 chrX 156040895 + 88090637 88090669 THE1D 372 + 340 372 101001 32 chain 550448 chrX 156040895 + 88207885 88213919 L1PA2 6032 + 0 6030 710 257 1 0 3288 1 2 280 1 0 67 1 0 2128 2 0 8 chain 29249 chrX 156040895 + 88249369 88249754 MER75 514 + 89 494 42965 83 0 21 45 6 5 251 chain 83596 chrX 156040895 + 88279762 88280781 L1PA7 6471 + 5435 6450 20891 186 1 0 79 4 6 46 7 1 73 0 1 623 chain 114144 chrX 156040895 + 88289196 88291574 L1PB1 5432 + 2278 5427 16536 61 190 193 14 155 1230 186 1 0 141 12 12 91 1 0 103 0 1 70 0 1 69 14 15 61 5 1 96 1 2 82 0 1 128 17 17 229 301 32 20 1 0 12 4 0 12 5 1 9 2 0 52 2 1 16 1 0 43 1 0 12 32 20 16 23 18 24 1 0 21 1 0 13 1 0 18 3 0 5 chain 69718 chrX 156040895 + 88307422 88308180 L1PA3long 6157 + 5400 6157 24068 147 1 0 610 chain 307170 chrX 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88928226 L1PA7 6471 + 4580 4863 53256 91 0 4 21 0 1 4 1 0 162 chain 9766 chrX 156040895 + 88928231 88928348 L1PA7 6471 + 4867 4984 70897 117 chain 18221 chrX 156040895 + 88928354 88928565 L1PA7 6471 + 4992 5203 58439 211 chain 103063 chrX 156040895 + 88928581 88929807 L1PA7 6471 + 5219 6441 17943 405 2 0 262 18 16 539 chain 23844 chrX 156040895 + 88952407 88952709 L1PA5 6144 + 5832 6143 51030 147 11 12 99 0 8 45 chain 74248 chrX 156040895 + 88955787 88956746 MER11A 1151 + 0 1151 23017 55 0 99 76 0 4 60 0 11 83 0 1 143 0 13 134 0 1 63 0 4 70 0 1 16 1 59 101 0 1 92 1 0 64 chain 46368 chrX 156040895 + 88985972 88986492 L1PA4 6152 + 5629 6152 30898 150 0 1 83 0 1 138 0 1 149 chain 4227 chrX 156040895 + 88991347 88991395 MER83 447 + 0 48 89955 48 chain 84192 chrX 156040895 + 89061815 89062789 L1PA3long 6157 + 5182 6155 20766 200 9 8 49 0 1 83 3 1 299 0 1 331 chain 13964 chrX 156040895 + 89069520 89069692 LTR29 598 + 379 551 63635 172 chain 18034 chrX 156040895 + 89077033 89077246 L1PA5 6144 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chain 3287 chrX 156040895 + 89466659 89466804 L1M3 994 + 705 835 97136 27 13 0 7 73 71 25 chain 51344 chrX 156040895 + 89533119 89533741 LTR12_ 688 + 0 688 29100 80 0 66 367 1 0 165 0 1 9 chain 61547 chrX 156040895 + 89620352 89621063 L1PA5 6144 + 5432 6144 25969 86 0 1 625 chain 50077 chrX 156040895 + 89637961 89638554 L1PA5 6144 + 4709 5306 29533 135 0 7 176 2 1 259 2 0 19 chain 38113 chrX 156040895 + 89640967 89641499 MLT2A2 560 + 0 560 35980 169 3 11 10 9 17 193 14 25 60 5 6 69 chain 24432 chrX 156040895 + 89642755 89643048 L1PA7 6471 + 6168 6461 50125 293 chain 523576 chrX 156040895 + 89673820 89680319 L1PA7 6471 + 0 6466 2107 124 0 1 286 6 7 102 0 1 168 20 21 298 1 0 487 8 11 395 0 1 265 0 1 473 11 1 120 0 4 279 0 1 438 14 13 197 1 0 308 0 3 63 0 1 127 60 0 171 0 2 149 7 6 40 31 28 23 1 2 54 0 4 316 4 5 146 0 1 52 0 4 96 0 2 98 6 7 220 0 9 684 1 2 149 chain 8364 chrX 156040895 + 89716314 89716619 L1PA8 5853 + 5158 5464 30062 52 1 2 252 chain 79268 chrX 156040895 + 89716625 89717686 MER11C 1089 + 0 1074 21792 55 0 91 4 91 0 163 0 4 176 0 3 194 0 4 39 15 16 314 1 2 9 chain 10667 chrX 156040895 + 89717700 89718089 L1PA8 5853 + 5464 5853 30062 93 6 5 47 2 0 66 5 4 9 4 0 9 1 4 38 5 4 17 2 1 19 0 7 66 chain 5558 chrX 156040895 + 89810664 89810729 L1PA7 6471 + 5233 5298 82998 65 chain 25210 chrX 156040895 + 89810729 89811046 L1PA7 6471 + 5299 5621 48929 293 2 7 22 chain 25596 chrX 156040895 + 89811047 89811401 L1PA7 6471 + 5621 5938 48323 186 42 1 6 0 4 120 chain 42975 chrX 156040895 + 89811401 89811926 L1PA7 6471 + 5939 6461 32788 454 0 2 6 2 0 53 3 0 7 chain 25663 chrX 156040895 + 89882301 89882572 AluYa5 310 + 27 298 48227 271 chain 30617 chrX 156040895 + 89926417 89926796 LTR12C 1709 + 664 1365 41452 91 0 2 37 8 324 106 0 4 137 chain 4697 chrX 156040895 + 89972706 89972775 MADE1 96 + 0 85 87286 33 2 18 34 chain 97156 chrX 156040895 + 89973118 89974208 L1PA5 6144 + 5044 6138 18641 253 0 4 837 chain 43982 chrX 156040895 + 90051872 90052369 L1PA4 6152 + 5659 6152 32139 487 4 0 6 chain 4941 chrX 156040895 + 90096447 90096505 THE1C-int 1605 + 1223 1281 85932 58 chain 83754 chrX 156040895 + 90109449 90110522 L1PA8 5853 + 4775 5851 20860 169 0 4 36 0 4 18 0 3 33 8 0 94 3 5 324 0 4 95 1 0 44 2 0 70 2 1 64 1 0 17 1 0 91 chain 12259 chrX 156040895 + 90129481 90129629 THE1D 372 + 224 372 66357 148 chain 29551 chrX 156040895 + 90137522 90137895 MER51B 395 + 7 395 42546 221 9 24 143 chain 3457 chrX 156040895 + 90171624 90171730 L1MC3 1789 + 1334 1439 95567 9 0 4 26 50 45 21 chain 37901 chrX 156040895 + 90173452 90174100 L1PB1 5432 + 4719 5284 36139 360 0 4 15 105 29 7 1 0 8 3 2 12 2 0 3 2 0 9 2 0 52 2 1 16 2 0 47 chain 61013 chrX 156040895 + 90181894 90182674 MER4E 760 + 0 760 26103 24 7 0 54 7 0 92 16 9 190 4 6 71 1 0 314 chain 191876 chrX 156040895 + 90196222 90199331 L1P2 5180 + 361 3069 10028 30 16 17 4 1 0 34 19 0 11 192 108 174 30 9 39 0 15 400 0 1 243 16 15 95 0 1 165 1 0 230 1 0 375 2 1 57 2 1 73 9 0 387 283 2 166 0 1 54 chain 75234 chrX 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156040895 + 90511843 90512066 L1PB1 5432 + 3117 3332 60866 21 8 0 194 chain 115837 chrX 156040895 + 90521153 90522517 LTR12C 1709 + 0 1709 16272 104 0 1 693 3 319 107 0 4 62 11 35 384 chain 179813 chrX 156040895 + 90527066 90529877 MER4-int 2692 + 1 2692 10596 10 1 0 25 2 0 21 1 0 4 0 1 37 4 1 18 1 0 11 9 4 355 0 1 43 7 16 65 4 5 41 1 0 51 0 1 13 10 11 11 32 47 47 0 1 4 1 0 14 0 1 59 2 1 147 5 57 194 221 27 108 1 0 14 4 3 171 1 0 4 0 1 107 0 1 24 1 0 188 1 2 36 0 1 8 0 1 36 0 4 212 16 17 268 1 0 50 11 12 33 0 1 45 chain 119710 chrX 156040895 + 90571568 90573180 L1PA10 4194 + 2526 4146 15576 80 32 34 36 4 8 15 0 1 139 0 4 890 0 2 92 2 1 254 47 43 21 chain 158743 chrX 156040895 + 90631037 90633108 HERVL-int 5654 + 0 5578 11824 72 4 5 537 0 3495 97 0 6 342 5 7 255 0 1 583 0 3 12 6 5 158 chain 33609 chrX 156040895 + 90633145 90633987 MLT2A1 477 + 0 477 38992 168 8 5 219 374 14 18 6 0 43 0 4 6 chain 148794 chrX 156040895 + 90649131 90650966 L1P2 5180 + 1783 3620 12434 256 1 2 56 0 10 175 1 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91017215 MLT2A2 560 + 520 560 96907 20 1 0 20 chain 32546 chrX 156040895 + 91043889 91044311 MLT2A1 477 + 0 425 39915 169 1 5 24 0 1 111 0 1 60 6 3 51 chain 90869 chrX 156040895 + 91055945 91057163 L1PA8 5853 + 4639 5853 19526 363 8 10 494 10 11 47 10 9 36 2 0 61 18 23 7 7 0 40 2 1 19 2 1 92 chain 438522 chrX 156040895 + 91059209 91064709 HERVL-int 5654 + 115 5654 4598 500 0 2 65 23 15 4 1 0 4 0 1 55 0 24 75 7 11 58 3 4 17 2 1 26 2 1 63 0 2 29 15 17 203 18 8 6 1 0 839 2 0 608 0 18 303 1 0 31 1 4 334 0 5 1285 0 1 33 0 6 248 3 4 189 1 2 9 12 2 78 8 0 7 1 9 113 0 1 15 0 2 202 chain 30131 chrX 156040895 + 91064709 91065123 MLT2A1 477 + 0 421 41909 91 0 6 43 0 1 27 1 5 35 10 8 169 3 1 35 chain 11456 chrX 156040895 + 91123192 91123408 MER50 708 + 469 690 67821 15 1 0 7 51 54 66 0 2 32 0 1 44 chain 33058 chrX 156040895 + 91132689 91133083 THE1B-int 1605 + 0 396 39470 109 0 2 285 chain 12238 chrX 156040895 + 91133810 91133970 THE1B 368 + 199 368 66396 93 2 1 24 0 10 41 chain 88628 chrX 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91390641 Tigger2 2703 + 170 268 76937 70 0 4 24 chain 68019 chrX 156040895 + 91401446 91402355 L1PBa 3878 + 1868 2761 24453 18 0 2 102 5 4 18 16 6 352 1 2 328 8 0 61 chain 42468 chrX 156040895 + 91402487 91403223 L1PB1 5432 + 4650 5370 33082 204 1 0 120 15 24 105 7 11 24 1 0 9 1 0 11 5 1 9 2 0 39 0 1 12 19 17 37 92 73 23 chain 23473 chrX 156040895 + 91409683 91410030 L1PREC2 3366 + 219 563 51629 14 1 0 14 1 0 10 2 0 32 1 0 19 0 5 77 12 10 68 1 0 95 chain 62154 chrX 156040895 + 91426982 91427976 L1PB1 5432 + 4487 5427 25832 118 0 4 22 8 0 15 16 17 433 30 13 5 1 0 24 1 0 9 1 0 9 2 0 3 2 0 8 5 3 50 3 2 13 2 1 45 2 1 14 2 0 6 59 44 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 11889 chrX 156040895 + 91458303 91458475 THE1C 375 + 195 369 67035 86 11 13 75 chain 13391 chrX 156040895 + 91458537 91458749 L1MA3 4352 + 4121 4324 64485 109 1 0 7 9 6 16 2 0 23 1 0 6 1 0 29 1 0 7 chain 184918 chrX 156040895 + 91469486 91471847 L1P3 4156 + 1 2355 10343 160 0 1 34 1 2 50 11 10 61 2 1 89 1 2 199 20 12 20 0 1 344 1 0 17 1 0 145 0 1 1205 chain 313086 chrX 156040895 + 91511426 91514963 L1P1 4361 + 799 4341 6552 56 1 2 177 1 0 186 5 6 1269 0 4 698 1 0 96 0 1 388 0 1 468 1 0 129 0 2 23 1 0 23 2 1 12 chain 3454 chrX 156040895 + 91539754 91539812 L1PA13 3608 + 147 201 95607 17 2 1 12 3 0 24 chain 3138 chrX 156040895 + 91564178 91564211 LTR12 884 + 345 378 98478 33 chain 219320 chrX 156040895 + 91572055 91574506 L1PA4 6152 + 3692 6141 9058 943 1 0 30 1 0 1476 chain 186728 chrX 156040895 + 91587930 91590559 L1PA10 4194 + 407 4161 10263 54 0 20 9 2 1137 130 4 2 6 0 4 44 0 4 8 34 21 764 1 15 7 1 0 16 13 9 66 2 1 227 0 5 7 27 3 162 20 9 14 2 0 698 0 5 252 20 17 27 1 0 11 chain 29571 chrX 156040895 + 91608310 91608784 L1PB2 3958 + 3361 3814 42519 16 2 0 62 2 0 13 20 16 77 3 4 6 2 0 62 1 0 64 2 1 53 8 1 18 2 0 21 1 0 39 chain 555333 chrX 156040895 + 91627098 91633250 L1PA3long 6157 + 0 6157 388 1867 0 1 2489 0 4 1796 chain 24630 chrX 156040895 + 91693627 91693890 L1HS 6032 + 5769 6032 49826 263 chain 21309 chrX 156040895 + 91702765 91703039 L1P3 4156 + 0 273 54752 251 2 1 21 chain 55208 chrX 156040895 + 91703039 91703760 L1PA8 5853 + 5135 5849 27805 429 1 0 35 11 9 70 2 1 9 1 0 52 2 1 19 2 1 88 chain 115945 chrX 156040895 + 91737727 91739247 THE1A-int 1579 + 0 1572 16248 115 0 3 91 0 21 172 15 23 26 0 1 204 10 9 121 0 19 199 1 2 134 1 2 8 1 0 422 chain 26036 chrX 156040895 + 91739254 91739593 THE1A 353 + 0 341 47674 109 2 1 25 0 4 63 1 0 139 chain 539458 chrX 156040895 + 91752801 91758825 L1PA3long 6157 + 0 6157 1374 153 0 1 614 8 136 115 0 4 5134 chain 12853 chrX 156040895 + 91798096 91798266 U2 167 + 0 164 65345 130 2 0 11 5 1 22 chain 10289 chrX 156040895 + 91876115 91876356 L1PB1 5432 + 5207 5424 69828 13 2 1 16 2 1 42 1 0 16 2 0 6 16 6 19 25 20 23 1 0 21 1 0 13 1 0 16 1 0 4 chain 9129 chrX 156040895 + 91923101 91923213 HERVL-int 5654 + 5538 5653 72287 15 0 3 97 chain 41822 chrX 156040895 + 91923214 91923757 MLT2A2 560 + 0 560 33470 28 0 5 369 0 11 65 11 12 70 chain 11785 chrX 156040895 + 91923762 91923932 L1PA16 3655 + 3460 3619 67242 117 3 0 19 3 0 7 6 1 15 chain 18816 chrX 156040895 + 91966417 91966653 L1PA6 6164 + 5924 6160 57760 84 1 3 142 2 0 7 chain 55236 chrX 156040895 + 91972850 91973450 L1PA2 6032 + 5431 6031 27798 600 chain 134108 chrX 156040895 + 92012912 92014413 L1PA4 6152 + 4020 5519 13642 256 1 0 1025 1 0 218 chain 28949 chrX 156040895 + 92036665 92037029 THE1B-int 1605 + 0 368 43407 74 0 4 290 chain 70328 chrX 156040895 + 92062532 92063348 L1PA7 6471 + 5646 6469 23911 440 0 4 208 1 2 156 0 2 11 chain 19554 chrX 156040895 + 92107662 92107890 MER4E 760 + 525 753 56951 228 chain 79477 chrX 156040895 + 92143292 92144298 THE1A-int 1579 + 568 1574 21746 296 19 16 520 0 4 65 1 0 105 chain 26233 chrX 156040895 + 92144303 92144633 THE1A 353 + 0 329 47373 110 1 0 219 chain 122902 chrX 156040895 + 92180932 92182510 THE1B-int 1605 + 0 1605 15039 127 0 1 5 2 1 298 9 34 215 0 1 485 1 2 436 chain 560256 chrX 156040895 + 92215069 92221209 L1PA3long 6157 + 6 6157 164 1161 0 3 1840 0 7 723 0 1 2416 chain 12941 chrX 156040895 + 92483920 92484081 L1P5 443 + 276 437 65188 161 chain 13544 chrX 156040895 + 92484532 92484847 L1PB1 5432 + 5114 5399 64261 20 1 0 8 3 2 12 11 7 5 2 0 34 20 19 16 1 0 44 1 0 15 1 0 4 2 0 13 9 0 13 14 11 9 2 0 24 1 0 22 1 0 7 chain 186673 chrX 156040895 + 92500607 92503236 L1PA11 4918 + 1902 4517 10266 291 17 15 24 1 2 6 1 0 224 0 2 70 17 14 167 1 0 186 0 8 214 1 3 531 4 1 140 0 6 210 0 5 83 4 5 17 7 8 46 0 5 21 27 4 47 14 15 38 0 4 17 27 20 42 2 1 13 2 0 66 2 0 15 1 0 20 4 0 9 chain 109772 chrX 156040895 + 92533710 92534945 L1P2 5180 + 798 2034 17099 648 1 0 284 0 1 119 0 1 183 chain 18667 chrX 156040895 + 92578148 92578364 L1PA7 6471 + 6248 6464 57931 216 chain 9746 chrX 156040895 + 92583400 92583513 THE1B-int 1605 + 1486 1600 70944 108 0 1 5 chain 20670 chrX 156040895 + 92654284 92654536 L1PA8 5853 + 4779 5028 55541 133 1 0 97 2 0 19 chain 36420 chrX 156040895 + 92662416 92663212 L1PA5 6144 + 5408 6144 37126 28 323 262 79 5 3 115 0 2 99 0 1 147 chain 45909 chrX 156040895 + 92691025 92691712 THE1C-int 1605 + 15 759 31100 81 0 57 17 3 0 185 3 0 85 5 12 72 5 4 14 9 10 16 27 27 48 1 0 116 chain 473414 chrX 156040895 + 92715943 92721658 L1PA6 6164 + 356 6158 3780 55 5 6 24 23 0 19 7 6 14 7 45 262 0 17 194 6 0 454 1 0 83 0 1 294 1 0 495 23 0 25 1 3 328 0 1 88 0 1 141 0 70 233 0 1 7 2 1 479 1 0 201 0 2 1406 0 4 307 0 1 523 0 5 6 chain 40296 chrX 156040895 + 92824427 92824880 LTR7 482 + 0 482 34450 246 0 31 8 2 0 197 chain 252934 chrX 156040895 + 92824882 92828035 HERVH-int 3825 + 0 3120 8157 488 2 0 44 69 0 38 1 0 9 2 1 24 29 0 15 0 37 42 2 1 10 20 20 27 0 1 6 0 2 13 0 3 455 16 1 215 0 2 119 0 5 57 0 3 43 8 35 359 0 1 187 0 1 738 0 1 67 25 27 23 chain 40498 chrX 156040895 + 92828894 92829345 LTR7 482 + 0 482 34308 264 0 31 187 chain 58200 chrX 156040895 + 92831059 92831811 MER4E1 777 + 0 767 26899 48 7 8 83 1 3 361 0 1 38 1 8 202 0 4 11 chain 42901 chrX 156040895 + 92859922 92860455 L1PA7 6471 + 5935 6469 32835 219 5 6 309 chain 4055 chrX 156040895 + 92885314 92885361 MADE1 96 + 48 95 91045 47 chain 44041 chrX 156040895 + 92897831 92898389 L1P3 4156 + 3551 4108 32106 135 1 0 422 chain 11665 chrX 156040895 + 92915613 92915758 L1P3 4156 + 3961 4107 67454 52 0 1 93 chain 2102 chrX 156040895 + 92915760 92915790 L1P3 4156 + 4107 4136 105785 9 1 0 20 chain 95426 chrX 156040895 + 92919188 92920269 L1PA5 6144 + 5063 6144 18854 170 0 1 171 1 0 739 chain 159072 chrX 156040895 + 92977905 92979827 L1PA7 6471 + 4521 6459 11803 25 6 19 41 0 2 222 1 0 769 0 4 18 2 0 838 chain 288694 chrX 156040895 + 93023370 93026965 HERVH-int 3825 + 0 3825 7172 333 1 0 197 1 0 10 1 0 5 0 1 24 1 0 10 1 0 10 4 0 7 6 0 6 3 1 14 1 0 13 3 0 13 0 39 15 2 1 16 21 0 8 0 1 5 2 1 49 1 0 450 16 1 455 4 31 290 0 4 287 0 1 475 0 2 76 1 0 5 1 2 212 9 11 12 1 2 25 8 218 260 0 2 225 chain 110066 chrX 156040895 + 93033236 93034596 L1P1 4361 + 663 2029 17074 39 12 5 93 3 0 6 23 26 203 0 13 981 chain 471379 chrX 156040895 + 93060248 93065534 L1PA4 6152 + 64 5353 3823 242 1 2 251 0 1 934 8 9 875 0 1 2651 1 0 323 chain 20034 chrX 156040895 + 93098787 93099043 MSTA-int 1630 + 1361 1616 56340 195 1 0 60 chain 24140 chrX 156040895 + 93122881 93123242 MLT2A1 477 + 0 374 50588 17 0 4 96 28 34 17 2 6 119 0 1 5 9 7 68 chain 308885 chrX 156040895 + 93132744 93136627 L1PA8A 6298 + 2381 6292 6641 127 1 3 49 17 26 122 11 12 44 0 3 185 0 1 12 0 4 164 0 1 4 1 0 739 3 4 759 0 1 704 0 1 43 0 1 42 1 2 56 1 0 78 1 3 435 0 1 168 7 0 8 2 10 99 chain 43455 chrX 156040895 + 93149101 93149759 LTR12_ 688 + 0 688 32475 80 0 90 35 0 66 85 126 0 332 chain 58886 chrX 156040895 + 93168271 93169322 MER11C 1089 + 0 1059 26708 254 5 8 95 3 6 14 9 10 39 17 16 92 64 65 15 90 90 40 10 0 10 20 28 43 10 11 42 0 1 15 4 5 160 chain 83162 chrX 156040895 + 93191886 93192810 L1PA4 6152 + 4355 5279 20988 924 chain 6917 chrX 156040895 + 93236290 93236375 LTR12C 1709 + 854 939 77892 85 chain 168569 chrX 156040895 + 93236878 93239179 HERVE_a-int 7009 + 4773 7008 11178 540 9 0 114 1 0 25 1 0 10 2 1 73 1 0 6 3 0 38 2 0 18 10 9 87 2 1 10 1 0 254 2 1 4 1 0 102 1 0 15 1 0 3 1 0 56 3 1 20 1 0 12 1 0 80 2 0 138 1 0 43 1 0 30 2 1 10 1 0 16 1 0 5 2 0 7 1 0 37 1 0 7 0 1 12 1 0 48 1 0 4 2 1 26 7 5 54 1 0 33 7 4 54 3 1 27 1 0 15 1 6 9 1 0 6 3 1 13 1 0 24 2 0 34 4 2 15 32 24 25 2 0 6 2 1 10 chain 36489 chrX 156040895 + 93239185 93239646 LTR2 463 + 0 463 37084 88 0 2 121 1 6 14 5 0 232 chain 10410 chrX 156040895 + 93262862 93263084 MER30 238 + 0 238 69593 22 53 52 39 4 20 6 2 0 51 0 3 45 chain 119337 chrX 156040895 + 93310512 93311793 L1HS 6032 + 4751 6031 15640 1267 1 0 13 chain 105158 chrX 156040895 + 93392368 93394018 L1PA8 5853 + 4521 5853 17667 489 2 0 179 309 0 373 1 0 47 2 0 70 1 0 14 6 5 42 2 1 19 6 5 88 chain 15316 chrX 156040895 + 93426350 93426559 L1PA7 6471 + 6257 6470 61888 5 0 1 39 1 0 144 8 12 12 chain 43949 chrX 156040895 + 93429667 93430164 LTR2C 499 + 0 499 32162 172 0 3 263 1 0 61 chain 348671 chrX 156040895 + 93431267 93435344 HERVE-int 4064 + 0 4064 5924 494 0 15 303 0 1 147 0 1 4 1 0 568 26 1 839 0 2 1031 2 0 352 4 0 306 chain 42932 chrX 156040895 + 93438001 93438491 LTR2C 499 + 3 499 32820 117 0 4 61 0 3 247 1 0 64 chain 33782 chrX 156040895 + 93455608 93456124 LTR3B_ 500 + 8 499 38863 294 5 1 22 1 2 21 0 1 8 0 1 14 25 35 67 6 0 9 29 1 15 chain 156781 chrX 156040895 + 93475614 93477576 L1PA8A 6298 + 4333 6285 11954 168 7 0 667 1 0 47 0 1 272 11 8 77 0 1 94 1 0 513 4 0 6 5 9 89 chain 36318 chrX 156040895 + 93490050 93490512 LTR2 463 + 0 463 37200 217 5 0 6 1 6 133 12 13 88 chain 282981 chrX 156040895 + 93494151 93498848 L1PA10 4194 + 175 4146 7343 12 2 0 13 3 0 7 19 13 12 2 0 9 1 0 9 1 0 8 0 1 4 10 8 15 1 0 8 37 12 7 1 0 24 2 0 16 1 0 8 4 3 8 1 0 10 0 1 12 20 12 77 1 0 4 6 5 148 10 5 232 8 8 7 0 4 10 10 6 844 4 5 65 331 3 211 0 2 92 5 8 127 315 12 256 16 9 59 17 16 28 0 1 312 1 0 161 12 0 11 17 4 396 7 9 532 5 0 30 13 10 30 chain 2998 chrX 156040895 + 93532937 93533120 LTR12 884 + 313 398 99846 24 18 31 10 111 0 20 chain 58877 chrX 156040895 + 93546178 93547940 L1PA15 4387 + 3278 4348 26711 32 25 2 175 650 0 78 16 14 148 6 10 51 48 46 11 2 4 41 58 55 159 1 0 20 20 19 41 5 4 17 4 0 12 1 0 39 19 16 44 23 16 16 chain 555997 chrX 156040895 + 93627330 93633481 L1PA3long 6157 + 4 6157 360 738 1 0 2876 0 2 10 1 2 2525 chain 12219 chrX 156040895 + 93636846 93636992 MSTA-int 1630 + 26 172 66443 146 chain 503237 chrX 156040895 + 93660443 93666611 L1PA7 6471 + 6 6469 3023 210 1 25 157 0 3 2 0 1 508 0 3 6 3 0 78 3 4 385 11 34 387 0 1 455 1 0 2 0 242 123 18 0 464 1 12 486 11 12 13 1 0 126 0 1 137 2 1 393 7 9 201 0 1 71 18 19 613 1 0 150 0 1 283 0 5 80 4 3 756 chain 6807 chrX 156040895 + 93687048 93687143 L1PB2 3958 + 3747 3838 78292 6 2 0 8 1 0 14 1 0 63 chain 38088 chrX 156040895 + 93718464 93718887 L1PA3long 6157 + 5735 6156 36002 234 2 0 187 chain 39368 chrX 156040895 + 93761951 93762533 PRIMA4_LTR 623 + 1 623 35102 67 0 14 7 1 2 24 0 10 53 0 23 53 9 0 7 7 0 9 0 1 46 1 0 35 1 2 20 10 12 51 0 1 7 2 4 96 5 7 71 chain 36631 chrX 156040895 + 93839179 93839687 MLT2A2 560 + 1 512 36995 165 8 9 5 1 0 209 1 0 4 0 1 9 7 10 99 chain 549973 chrX 156040895 + 93939745 93945900 L1PA2 6032 + 4 6029 751 253 1 0 520 129 1 4238 1 0 1013 chain 34036 chrX 156040895 + 93953908 93954398 THE1B-int 1605 + 2 479 38682 114 0 4 302 50 33 24 chain 432539 chrX 156040895 + 93957817 93963456 HERVL-int 5654 + 0 5654 4709 56 3 2 175 0 1 176 22 26 204 12 9 243 0 2 230 8 6 1116 0 1 22 0 1 180 0 1 502 0 1 132 0 1 964 41 43 146 1 0 31 1 2 72 0 9 24 1 2 83 0 2 409 0 2 70 0 2 164 0 1 302 10 0 16 1 0 4 0 1 218 chain 28923 chrX 156040895 + 93965800 93966144 LTR14A 344 + 0 344 43450 344 chain 16100 chrX 156040895 + 94046091 94046824 LTR12D 1347 + 587 1191 60893 106 112 18 41 300 296 34 1 0 24 2 5 10 40 7 22 24 24 17 chain 3446 chrX 156040895 + 94046197 94046308 LTR12D 1347 + 574 652 93893 10 28 24 15 29 0 29 chain 5443 chrX 156040895 + 94062306 94062377 L1MA9 1812 + 1337 1409 83490 49 0 1 22 chain 49536 chrX 156040895 + 94081843 94082735 L1PB1 5432 + 4559 5422 29752 66 4 1 115 0 1 237 1 2 74 5 6 4 1 0 33 7 12 7 7 0 21 35 32 38 12 11 12 8 7 39 44 31 16 27 22 24 1 0 21 1 0 13 1 0 18 chain 52233 chrX 156040895 + 94106410 94107073 L1PA8 5853 + 5188 5847 28806 90 0 4 239 1 0 43 1 0 45 2 0 72 1 0 7 1 0 52 2 1 19 7 6 81 chain 78920 chrX 156040895 + 94118429 94119402 HERVL-int 5654 + 4237 5224 21893 223 0 12 81 3 0 101 0 1 98 0 1 4 1 0 143 1 4 78 0 1 240 chain 236532 chrX 156040895 + 94148968 94151680 L1PA6 6164 + 2985 5680 8557 204 0 1 560 9 1 717 8 0 1076 2 0 136 chain 4059 chrX 156040895 + 94168800 94168846 MSTA 426 + 370 416 91017 46 chain 115992 chrX 156040895 + 94195963 94197545 THE1B-int 1605 + 0 1600 16238 12 5 6 157 0 1 4 5 37 213 38 21 108 0 1 187 10 1 7 0 9 406 7 6 225 4 5 194 chain 21263 chrX 156040895 + 94206860 94207219 THE1B 368 + 1 368 54811 12 2 0 31 33 39 86 1 0 21 17 24 16 1 0 10 1 0 128 chain 23165 chrX 156040895 + 94221718 94222097 LTR7 482 + 0 473 52123 101 15 14 17 36 129 46 0 1 111 13 14 40 chain 28141 chrX 156040895 + 94290431 94290875 LTR7B 505 + 7 505 44651 31 0 2 68 0 10 30 31 104 28 29 0 82 1 0 79 14 13 51 chain 60250 chrX 156040895 + 94307231 94307917 L1PA4 6152 + 4537 5217 26308 98 1 0 179 5 0 403 chain 20714 chrX 156040895 + 94331222 94331550 Tigger3b 1229 + 224 550 55480 67 1 0 43 1 0 82 14 11 5 0 3 47 18 20 41 2 0 7 chain 8957 chrX 156040895 + 94331663 94331772 MER85 139 + 7 126 72657 83 0 10 26 chain 4045 chrX 156040895 + 94340286 94340334 MADE1 96 + 42 90 91120 48 chain 36324 chrX 156040895 + 94341573 94342147 MER51A 677 + 0 659 37193 131 1 10 29 13 76 269 3 24 19 33 25 30 17 21 6 4 0 19 chain 56790 chrX 156040895 + 94364308 94365070 MER4E1 777 + 17 777 27329 222 2 0 5 17 5 58 0 1 192 0 1 31 5 13 223 0 2 7 chain 6549 chrX 156040895 + 94372443 94372524 L1MA1 4479 + 1263 1344 79161 81 chain 56530 chrX 156040895 + 94410862 94411606 MER4E 760 + 0 759 27417 14 4 5 255 0 7 62 0 3 184 8 7 19 5 6 29 5 9 159 chain 7938 chrX 156040895 + 94449669 94449861 L1PB1 5432 + 5251 5423 75030 28 1 0 17 1 0 6 16 6 15 17 14 9 2 0 24 1 0 21 12 10 22 chain 10558 chrX 156040895 + 94449928 94450082 L1MA3 4352 + 3711 3875 69310 28 19 25 21 0 4 86 chain 73136 chrX 156040895 + 94465189 94466291 L1PA14 3548 + 2365 3453 23289 9 0 11 83 0 2 65 2 1 152 2 1 10 0 1 4 11 10 226 2 0 54 6 4 7 2 0 109 9 5 12 2 0 6 1 0 84 1 0 110 1 0 10 6 2 19 2 1 16 23 19 17 1 0 38 chain 8995 chrX 156040895 + 94490175 94490281 MER4A1 472 + 0 106 72567 106 chain 245789 chrX 156040895 + 94493119 94497969 HERVK22-int 3844 + 313 3844 8335 1772 0 3 764 0 4 103 0 1 53 0 2 33 2 1 9 642 23 37 2 1 5 1 0 18 1 0 34 2 1 21 2 0 39 15 10 45 2 0 14 21 11 4 1 0 12 2 0 5 2 0 5 2 0 3 2 0 9 1 0 8 66 48 19 11 7 29 849 196 88 1 0 94 chain 91859 chrX 156040895 + 94535827 94537021 L1PA8A 6298 + 4833 6284 19363 201 16 271 76 6 7 100 0 2 81 3 2 235 0 1 192 1 0 283 chain 59784 chrX 156040895 + 94554669 94555455 HERVL-int 5654 + 0 781 26435 294 5 1 6 0 4 40 6 1 435 chain 21250 chrX 156040895 + 94578739 94578970 L1PA4 6152 + 5921 6152 54823 231 chain 46075 chrX 156040895 + 94637512 94638071 L1P3 4156 + 3583 4139 31028 524 2 0 7 2 1 24 chain 25914 chrX 156040895 + 94685144 94685499 THE1A 353 + 0 353 47841 105 7 6 118 0 1 5 1 0 57 5 4 57 chain 34885 chrX 156040895 + 94705353 94705829 LTR2B 499 + 9 499 38103 5 1 0 51 5 0 25 15 34 175 0 1 6 0 1 10 1 0 182 chain 5406 chrX 156040895 + 94711261 94711323 MER51A 677 + 460 522 83678 62 chain 6950 chrX 156040895 + 94712323 94712411 L1PA15 4387 + 1156 1244 77777 88 chain 3426 chrX 156040895 + 94722556 94722599 MLT1E3 631 + 526 569 95851 43 chain 119581 chrX 156040895 + 94779069 94780556 L1PA7 6471 + 4991 6469 15596 161 11 1 471 1 4 75 1 0 300 4 2 68 4 6 236 0 1 143 2 0 10 chain 5799 chrX 156040895 + 94787194 94787382 L1PB1 5432 + 5242 5403 81924 39 1 0 15 35 18 12 51 43 24 1 0 10 chain 133077 chrX 156040895 + 94791756 94793430 L1PA7 6471 + 3233 4908 13735 183 6 1 132 0 4 282 0 1 48 10 3 42 0 2 46 6 12 272 1 0 299 4 5 218 1 0 25 0 2 46 1 0 52 chain 2889 chrX 156040895 + 94794289 94794321 L1PB 1623 + 1310 1342 100932 32 chain 24540 chrX 156040895 + 94794329 94794696 L1PB1 5432 + 4391 5157 49961 19 0 417 175 27 13 88 1 2 10 3 0 23 1 0 6 1 0 13 chain 33685 chrX 156040895 + 94805421 94805793 L1PA3long 6157 + 5785 6157 38938 372 chain 48893 chrX 156040895 + 94812944 94813515 L1PA5 6144 + 5577 6138 29983 419 1 0 20 9 0 122 chain 14585 chrX 156040895 + 94827691 94827865 L1PA4 6152 + 3669 3843 62816 174 chain 539831 chrX 156040895 + 94862379 94868396 L1PA3long 6157 + 4 6156 1350 149 0 1 614 8 136 1682 0 1 682 8 12 2721 0 1 153 chain 49013 chrX 156040895 + 94921581 94922184 L1PA8A 6298 + 5691 6291 29947 266 2 0 62 2 1 271 chain 440844 chrX 156040895 + 94942413 94948750 L1PA8A 6298 + 44 6291 4561 12 1 0 9 10 5 7 6 0 19 8 5 18 22 13 17 1 0 4 25 26 10 2 0 15 2 0 4 1 0 12 3 2 7 1 0 8 1 0 7 1 0 13 129 113 37 2 0 19 1 0 6 6 4 79 7 6 23 0 143 9 143 0 112 4 0 195 12 13 345 1 0 73 5 8 189 1 2 4 1 0 50 43 45 305 7 8 460 18 0 91 1 0 5 3 4 92 10 11 50 0 4 198 7 11 176 20 22 7 0 2 140 0 4 375 10 1 177 51 8 445 8 10 260 0 1 226 28 23 494 0 16 47 0 2 6 5 2 73 0 3 800 chain 98450 chrX 156040895 + 95002159 95003432 L1PB1 5432 + 3847 5115 18484 322 1 0 38 4 5 168 0 1 245 3 0 191 37 31 253 1 4 10 chain 16874 chrX 156040895 + 95070920 95071150 L1PA8 5853 + 5623 5853 59940 56 1 0 15 2 1 34 0 4 10 1 0 17 1 0 93 chain 40038 chrX 156040895 + 95092676 95093127 LTR7 482 + 0 482 34626 263 1 32 187 chain 92422 chrX 156040895 + 95105243 95106312 MER11C 1089 + 6 1073 19283 17 0 1 74 1 0 578 1 0 178 1 0 219 chain 39725 chrX 156040895 + 95172583 95173151 MER4A1_ 611 + 0 599 34875 122 0 1 165 0 6 59 55 79 167 chain 39965 chrX 156040895 + 95204523 95205010 MER9a3 513 + 20 508 34684 90 0 1 145 1 0 174 5 6 72 chain 78697 chrX 156040895 + 95214296 95215214 L1PA5 6144 + 5222 6143 21942 72 1 0 55 0 3 453 0 1 337 chain 420846 chrX 156040895 + 95225293 95230844 L1PA8 5853 + 50 5853 4869 21 2 0 5 2 1 5 1 0 14 32 12 162 5 0 31 19 7 471 0 97 152 0 197 194 1 0 141 0 1 103 26 6 229 7 9 107 9 6 24 1 3 165 0 30 6 30 0 595 43 38 112 5 6 20 0 10 299 1 2 618 7 8 489 0 5 18 0 1 330 0 1 8 0 1 83 0 9 31 0 1 17 0 1 53 6 9 70 8 3 340 0 1 134 1 0 48 2 0 43 2 1 25 1 0 8 5 4 52 1 0 17 1 0 93 chain 194871 chrX 156040895 + 95260728 95263067 L1PA7 6471 + 4104 6469 9895 165 0 7 223 6 4 45 0 15 1137 1 2 281 0 1 154 0 1 223 0 1 88 1 3 15 chain 3189 chrX 156040895 + 95269378 95269413 THE1D-int 1627 + 307 342 97997 35 chain 14743 chrX 156040895 + 95299676 95299863 L1PA8 5853 + 4212 4403 62608 5 0 3 139 4 5 39 chain 23523 chrX 156040895 + 95299866 95300266 L1PA8 5853 + 4407 4716 51547 94 94 1 74 0 1 110 5 6 23 chain 8255 chrX 156040895 + 95300273 95300369 L1PA8 5853 + 4722 4818 74274 96 chain 78512 chrX 156040895 + 95300379 95301417 L1PA8 5853 + 4824 5853 21978 182 6 3 220 0 2 96 0 1 234 1 0 46 2 0 65 17 15 8 1 0 44 2 1 19 1 0 15 6 5 73 chain 7279 chrX 156040895 + 95335040 95335131 L1PBa 3878 + 2179 2270 76730 91 chain 13477 chrX 156040895 + 95341235 95341454 THE1B 368 + 0 243 64343 38 0 15 55 25 34 24 1 0 11 1 0 23 0 2 41 chain 46631 chrX 156040895 + 95341504 95342105 THE1B-int 1605 + 995 1602 30806 47 4 0 68 12 13 93 0 9 377 chain 90746 chrX 156040895 + 95370622 95371619 L1PA3long 6157 + 4457 5454 19544 997 chain 32905 chrX 156040895 + 95392883 95393255 L1PA4 6152 + 5768 6141 39583 228 0 1 144 chain 107568 chrX 156040895 + 95404380 95405705 L1P3 4156 + 1754 3081 17380 410 1 2 63 1 0 68 1 2 128 1 0 90 0 2 562 chain 38976 chrX 156040895 + 95432012 95432445 L1PA3long 6157 + 5724 6157 35372 433 chain 98887 chrX 156040895 + 95438945 95440031 L1PA3long 6157 + 5070 6157 18426 236 0 1 850 chain 18838 chrX 156040895 + 95484299 95484627 L1MA3 4352 + 3981 4282 57729 100 1 0 6 61 37 136 2 0 22 chain 26601 chrX 156040895 + 95493214 95493569 THE1A 353 + 0 353 46830 24 0 1 86 1 0 71 5 6 14 3 0 151 chain 124487 chrX 156040895 + 95493569 95495137 THE1A-int 1579 + 0 1574 14781 76 1 0 37 0 3 57 1 4 311 0 1 142 8 7 17 5 4 331 0 1 543 1 0 5 0 1 26 0 1 7 chain 48440 chrX 156040895 + 95524657 95525423 L1MA1 4479 + 424 1198 30136 241 9 12 7 5 0 29 46 51 20 8 0 6 11 19 8 0 3 34 1 0 193 0 4 102 2 1 44 chain 13305 chrX 156040895 + 95567209 95567376 L1MA2 4263 + 2259 2426 64610 167 chain 46644 chrX 156040895 + 95580380 95581005 MER4A 717 + 85 717 30796 260 0 1 59 0 2 50 8 11 218 6 7 24 chain 60985 chrX 156040895 + 95601477 95602133 L1HS 6032 + 5376 6032 26110 656 chain 36167 chrX 156040895 + 95660516 95660944 LTR2 463 + 0 433 37296 57 2 1 206 0 5 99 0 1 64 chain 19193 chrX 156040895 + 95663504 95663726 L1PA7 6471 + 6245 6467 57357 222 chain 29971 chrX 156040895 + 95713088 95713455 MLT2A1 477 + 0 371 42084 168 1 5 198 chain 135077 chrX 156040895 + 95713675 95715404 HERVL-int 5654 + 0 5654 13539 42 1 2 78 0 1 152 0 3906 12 0 1 560 1 0 4 0 1 211 1 2 28 1 2 145 1 12 328 0 3 164 chain 33307 chrX 156040895 + 95715404 95715849 MLT2A1 477 + 0 437 39252 164 5 9 21 1 0 205 4 0 8 4 0 18 3 0 12 chain 70863 chrX 156040895 + 95734484 95735272 L1PA2 6032 + 5244 6032 23788 622 5 0 7 1 6 153 chain 14138 chrX 156040895 + 95762798 95763160 MLT1A 405 + 11 367 63397 108 13 23 28 150 134 63 chain 156895 chrX 156040895 + 95769853 95771726 L1PA6 6164 + 2266 6156 11946 59 15 0 63 0 2 387 0 2021 265 0 11 40 2 1 200 1 0 89 1 0 614 0 1 137 chain 20789 chrX 156040895 + 95785096 95785476 L1MA3 4352 + 3988 4332 55379 105 35 13 6 3 0 124 4 0 24 3 0 22 12 10 18 5 4 14 1 0 4 chain 116344 chrX 156040895 + 95811354 95812590 L1HS 6032 + 3306 4542 16162 1236 chain 37215 chrX 156040895 + 95838372 95838921 L1PA16 3655 + 2958 3578 36603 61 22 96 76 28 27 72 2 0 288 chain 126604 chrX 156040895 + 95851455 95852824 L1PA3long 6157 + 4788 6157 14465 1369 chain 54315 chrX 156040895 + 95855153 95855987 L1MA1 4479 + 3313 4129 28117 76 4 1 119 14 11 195 1 0 24 2 0 16 1 0 46 0 1 24 1 0 19 2 0 7 0 1 6 1 0 88 17 13 118 2 1 18 17 16 16 chain 477570 chrX 156040895 + 95867501 95873711 L1PA8A 6298 + 129 6289 3687 19 1 0 9 2 1 12 1 0 7 1 0 12 91 77 43 1 0 21 65 9 69 2 0 13 2 1 9 6 4 72 8 7 84 1 0 236 12 13 280 3 0 11 4 0 86 0 1 41 0 3 117 0 1 61 1 7 102 0 3 281 1 4 192 0 1 462 0 1 79 17 1 602 0 1 75 1 0 4 0 1 10 14 13 158 1 4 170 0 1 119 8 20 97 18 24 5 1 0 940 1 0 664 0 3 89 2 4 167 0 1 381 2 0 33 13 24 98 chain 62849 chrX 156040895 + 95926035 95926778 L1PA7 6471 + 5732 6466 25666 465 0 1 20 8 0 180 1 3 57 4 0 8 chain 9854 chrX 156040895 + 95961729 95961838 HERVL-int 5654 + 4305 4414 70714 109 chain 49284 chrX 156040895 + 95974511 95975188 L1PBa1 4058 + 93 749 29839 132 32 14 194 3 1 186 11 10 119 chain 310862 chrX 156040895 + 96010399 96014186 L1PA7 6471 + 2715 6466 6591 368 4 5 8 0 4 155 16 0 247 0 1 492 45 12 50 0 3 99 0 1 317 0 1 370 0 1 4 2 1 126 1 2 419 0 1 219 1 0 88 0 1 595 5 4 143 0 1 13 chain 54157 chrX 156040895 + 96020904 96021509 L1PA3long 6157 + 5551 6157 28169 246 0 1 26 1 0 183 0 1 149 chain 16700 chrX 156040895 + 96035363 96035558 L1PA7 6471 + 6266 6461 60151 195 chain 179694 chrX 156040895 + 96078250 96080217 L1PA2 6032 + 4061 6032 10604 166 1 5 1800 chain 11667 chrX 156040895 + 96121017 96121148 L1PA7 6471 + 6176 6307 67450 131 chain 11846 chrX 156040895 + 96121169 96121304 L1PA7 6471 + 6329 6464 67120 135 chain 111531 chrX 156040895 + 96121309 96123075 L1PB2 3958 + 2077 3838 16875 194 0 4 7 8 13 23 1 0 16 1 0 15 0 4 8 4 0 33 0 1 77 12 9 220 0 1 37 0 1 4 1 0 91 28 27 51 12 11 123 0 1 44 0 7 20 30 31 59 4 0 76 14 12 63 2 1 13 4 0 65 2 0 14 28 29 49 10 9 78 3 2 61 2 1 71 2 0 22 1 0 63 chain 4267 chrX 156040895 + 96145459 96145508 L1PA15 4387 + 3040 3089 89727 49 chain 21028 chrX 156040895 + 96151242 96151638 L1PA2 6032 + 5673 6032 55084 84 37 0 275 chain 100228 chrX 156040895 + 96174581 96175672 L1PA3long 6157 + 5061 6152 18275 1091 chain 325062 chrX 156040895 + 96187059 96190658 L1PA3long 6157 + 2547 6153 6307 1494 0 4 77 0 2 290 4 5 1734 chain 16794 chrX 156040895 + 96198286 96198534 L1PA8 5853 + 5609 5853 60037 73 8 6 44 14 13 15 1 0 93 chain 54940 chrX 156040895 + 96207209 96208073 L1MA1 4479 + 3295 4142 27898 16 5 0 79 12 9 46 10 13 52 13 13 192 0 1 4 2 0 13 8 6 16 1 0 11 0 1 78 2 0 14 1 0 89 29 25 7 0 1 97 1 0 29 2 0 35 chain 515878 chrX 156040895 + 96214214 96220659 L1PA7 6471 + 5 6461 2474 401 28 8 651 4 5 107 0 3 685 5 20 278 0 4 96 16 15 361 9 0 62 4 7 316 15 16 199 0 2 580 15 8 172 1 4 92 0 2 5 6 7 87 6 5 316 1 3 149 0 4 260 0 1 602 0 1 4 1 0 71 0 4 82 3 2 205 1 2 227 0 1 290 7 9 25 chain 43521 chrX 156040895 + 96261364 96261862 L1PA5 6144 + 5629 6132 32438 352 1 6 145 chain 547314 chrX 156040895 + 96269391 96275520 L1PA3long 6157 + 4 6157 903 606 0 6 97 1 2 696 0 9 838 0 2 9 2 0 844 0 1 306 1 0 185 0 1 1519 0 1 178 0 4 78 0 2 769 chain 329970 chrX 156040895 + 96275774 96280269 L1PB1 5432 + 943 5422 6218 441 13 9 17 0 1 79 1 0 444 0 6 496 1 0 60 0 7 9 0 1 39 0 4 264 2 0 6 27 24 219 0 1 93 2 1 552 8 18 292 0 1 141 10 21 253 0 6 173 3 0 23 5 3 163 1 0 6 0 1 286 2 3 8 17 0 24 8 6 16 4 0 8 2 0 51 1 0 17 1 0 45 1 0 13 26 14 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 18 chain 14019 chrX 156040895 + 96291849 96292026 L1PA7 6471 + 3379 3555 63563 124 1 0 52 chain 36444 chrX 156040895 + 96292033 96292460 L1PA7 6471 + 3572 4000 37108 299 0 1 128 chain 38751 chrX 156040895 + 96292474 96292962 L1PA7 6471 + 4011 4499 35526 116 1 0 20 9 10 342 chain 92672 chrX 156040895 + 96292969 96294083 L1PA7 6471 + 4508 5622 19244 1114 chain 70841 chrX 156040895 + 96294085 96294934 L1PA7 6471 + 5622 6469 23796 280 3 1 566 chain 115394 chrX 156040895 + 96302578 96303893 L1PA5 6144 + 4821 6137 16330 473 1 0 331 19 19 28 0 2 463 chain 21811 chrX 156040895 + 96327167 96327441 AluSc 308 + 8 288 54087 39 4 10 231 chain 55796 chrX 156040895 + 96360736 96361493 L1PA8 5853 + 5099 5853 27629 48 5 0 417 1 0 45 1 9 61 1 0 5 20 18 38 2 1 19 6 5 88 chain 11750 chrX 156040895 + 96396708 96396877 Tigger3c 601 + 406 578 67310 120 13 16 36 chain 451081 chrX 156040895 + 96486663 96491775 L1PA4 6152 + 3 5357 4364 95 6 223 17 7 8 795 0 24 1592 0 1 282 0 1 648 1 0 1612 1 0 56 chain 4339 chrX 156040895 + 96497097 96497147 MLT2B4 540 + 341 391 89240 50 chain 81482 chrX 156040895 + 96529595 96530564 L1PA6 6164 + 5183 6162 21336 120 0 11 809 0 1 31 2 0 7 chain 54060 chrX 156040895 + 96532975 96533665 L1P3 4156 + 3 696 28206 123 0 2 19 5 5 99 11 10 61 1 0 21 0 1 63 0 2 287 chain 37885 chrX 156040895 + 96571104 96571518 L1PA4 6152 + 5727 6141 36154 414 chain 480273 chrX 156040895 + 96584627 96590094 L1PA4 6152 + 672 6146 3628 186 4 0 148 0 10 219 2 0 1349 0 1 1193 2 1 834 5 1 106 1 5 569 0 1 456 0 1 123 0 1 270 chain 535544 chrX 156040895 + 96597640 96603781 L1PA5 6144 + 3 6144 1591 1044 1 2 88 5 4 94 1 0 20 15 4 24 0 1 337 0 2 47 0 4 267 0 1 1739 0 1 463 0 1 313 0 1 1351 1 0 319 1 3 11 chain 314929 chrX 156040895 + 96624445 96628280 HERVH-int 3825 + 38 3825 6510 29 8 9 257 1 0 156 1 0 5 0 1 6 0 4 7 3 68 24 115 0 14 1 0 13 4 1 24 1 0 41 1 0 82 1 0 823 0 5 467 0 1 1104 1 0 646 chain 4814 chrX 156040895 + 96624942 96625057 HERVH-int 3825 + 614 683 82024 17 3 0 14 46 4 7 1 0 27 chain 25559 chrX 156040895 + 96630092 96630448 LTR7 482 + 1 482 48387 70 4 93 60 0 1 41 0 31 10 0 2 110 12 14 49 chain 91780 chrX 156040895 + 96632775 96633961 L1PA8A 6298 + 5112 6291 19372 90 9 10 244 21 0 7 1 21 57 3 0 27 1 3 39 1 0 22 1 0 374 2 1 208 3 0 76 chain 237913 chrX 156040895 + 96657067 96660383 L1PA13 3608 + 123 3382 8525 15 3 0 26 2 1 12 3 0 24 29 17 41 0 1 29 8 6 121 1 0 12 1 0 17 2 0 8 15 10 18 1 0 17 9 7 11 2 0 18 1 0 97 2 0 45 18 20 151 0 1 927 0 3 137 20 21 92 0 1 300 0 1 72 40 18 38 1 0 91 0 4 239 2 3 59 0 1 182 1 0 95 0 2 26 1 0 36 10 1 76 2 0 63 28 27 19 chain 4433 chrX 156040895 + 96773923 96773988 MLT1B 390 + 323 390 88707 15 5 7 45 chain 27458 chrX 156040895 + 96875774 96876077 L1PA5 6144 + 4993 5297 45626 33 0 1 270 chain 59164 chrX 156040895 + 96876077 96876743 L1PA5 6144 + 5301 5967 26618 666 chain 8724 chrX 156040895 + 96973501 96973673 MER2 342 + 131 266 73162 42 40 3 58 2 0 6 0 2 24 chain 11640 chrX 156040895 + 97120567 97120740 MER30 238 + 65 238 67496 42 5 8 84 4 1 38 chain 26122 chrX 156040895 + 97157367 97157734 MER41C 542 + 143 535 47531 26 8 0 13 0 8 121 0 17 8 0 4 34 10 14 147 chain 2916 chrX 156040895 + 97191361 97191393 U2 167 + 0 32 100694 32 chain 449260 chrX 156040895 + 97200582 97206320 L1PA8 5853 + 108 5853 4407 34 1 2 85 1 0 5 0 1 48 37 25 288 0 4 21 0 4 13 3 0 6 12 13 8 0 1 536 0 2 348 0 5 468 19 0 40 1 0 337 0 10 74 0 3 163 2 0 5 1 3 77 2 1 5 0 1 138 1 0 338 0 1 173 7 6 528 1 3 398 6 5 194 5 4 49 2 1 277 0 1 148 0 7 45 0 7 60 0 5 432 1 0 46 2 0 68 24 22 40 2 1 19 1 0 93 chain 24108 chrX 156040895 + 97234052 97234360 AluSp 311 + 11 311 50632 117 8 0 10 5 5 168 chain 25375 chrX 156040895 + 97249828 97250123 AluSp 311 + 10 304 48658 81 0 3 204 4 0 6 chain 516724 chrX 156040895 + 97409402 97415864 L1PA6 6164 + 0 6162 2437 63 1 2 394 7 6 185 0 4 139 17 0 504 0 8 504 0 2 157 0 1 358 2 3 859 0 1 335 1 0 536 0 2 98 0 2 101 3 5 255 4 1 24 0 1 129 1 0 280 312 0 43 0 1 140 0 9 160 0 4 838 4 0 8 chain 4427 chrX 156040895 + 97549768 97549860 L1MC4 1079 + 699 800 88752 45 29 38 18 chain 30584 chrX 156040895 + 97643072 97643462 L1P4 1494 + 831 1220 41483 248 1 0 141 chain 106744 chrX 156040895 + 97648668 97649848 L1PA3long 6157 + 4983 6157 17464 324 1 0 679 5 0 171 chain 121255 chrX 156040895 + 97710442 97712527 L1PA16 3655 + 1762 3587 15307 33 1 0 104 0 1 101 19 0 128 1 73 7 0 3 28 358 51 21 11 7 15 0 1 127 0 9 7 16 7 63 0 3 122 9 15 210 1 0 24 1 0 282 1 0 88 2 0 123 14 16 92 9 0 55 3 0 9 chain 25212 chrX 156040895 + 97742205 97742518 THE1C 375 + 0 314 48922 139 0 1 174 chain 120619 chrX 156040895 + 97742550 97744102 THE1C-int 1605 + 0 1605 15429 14 2 1 108 0 54 150 0 6 107 5 12 150 7 6 96 1 0 50 13 7 407 4 0 312 5 4 121 chain 13525 chrX 156040895 + 97793618 97793760 L1PA2 6032 + 5874 6016 64281 142 chain 5619 chrX 156040895 + 97797743 97797903 MER34A 573 + 109 258 82711 6 1 0 31 73 63 49 chain 3535 chrX 156040895 + 97818070 97818113 MLT1D 503 + 4 47 94975 43 chain 9189 chrX 156040895 + 97841554 97841820 HERV-Fc2_LTR 353 + 61 318 72142 40 125 116 101 chain 190220 chrX 156040895 + 97841857 97846500 HERV-Fc2-int 3928 + 0 3928 10102 39 930 228 1121 3 0 111 137 137 589 149 156 7 7 0 552 316 310 36 1 0 191 220 217 234 chain 9127 chrX 156040895 + 97849117 97849387 HERV-Fc2_LTR 353 + 56 318 72293 4 0 1 40 125 116 101 chain 333392 chrX 156040895 + 97914961 97919373 L1P3 4156 + 0 4139 6157 17 0 1 233 1 0 69 15 13 395 0 8 466 5 9 179 1 4 187 0 1 12 0 3 132 22 21 89 1 0 309 290 0 197 0 1 92 0 2 189 0 2 1476 2 0 7 2 1 24 chain 522008 chrX 156040895 + 97921050 97927201 L1PA6 6164 + 1 6161 2182 234 0 2 279 2 4 47 1 0 1758 4 0 468 0 4 393 0 2 489 3 4 648 1 0 986 0 4 838 chain 58554 chrX 156040895 + 97927311 97927986 L1PA7 6471 + 5793 6469 26803 531 0 1 144 chain 5161 chrX 156040895 + 97928527 97928583 MIR 256 + 37 93 84854 56 chain 2649 chrX 156040895 + 97967076 97967147 MADE1 96 + 0 87 102722 28 5 21 38 chain 37579 chrX 156040895 + 98033033 98033500 L1PA7 6471 + 5996 6464 36350 311 1 2 14 0 1 4 1 0 136 chain 6729 chrX 156040895 + 98079820 98079908 UCON29 292 + 105 192 78548 54 3 0 6 0 2 25 chain 37080 chrX 156040895 + 98093130 98093562 L1PA7 6471 + 6032 6469 36694 420 1 6 11 chain 4356 chrX 156040895 + 98122280 98122336 L1MA2 4263 + 2204 2261 89132 40 0 1 16 chain 116149 chrX 156040895 + 98137119 98138727 L1PB2 3958 + 2219 3818 16200 267 1 0 4 5 3 245 2 3 79 1 0 27 0 1 76 1 0 122 1 3 75 5 8 177 2 0 13 0 1 5 0 1 25 0 1 6 1 0 11 2 0 53 0 1 12 2 0 13 2 0 89 2 0 76 2 1 64 2 1 64 5 4 24 2 1 43 chain 56503 chrX 156040895 + 98147472 98148247 L1P3 4156 + 3395 4139 27427 207 0 1 4 1 0 93 11 0 86 1 2 38 18 0 281 2 0 7 2 1 24 chain 10406 chrX 156040895 + 98150091 98150219 L1P3 4156 + 3627 3755 69600 128 chain 10511 chrX 156040895 + 98156000 98156124 L1PA15 4387 + 2160 2284 69398 124 chain 38609 chrX 156040895 + 98197891 98198394 LTR12 884 + 0 873 35633 25 1 0 30 0 41 41 0 41 155 0 49 189 5 245 57 chain 88264 chrX 156040895 + 98269080 98270167 MER11B 1079 + 0 1071 19991 259 3 0 336 1 0 153 0 1 23 14 0 281 5 6 12 chain 29345 chrX 156040895 + 98288787 98289247 LTR7B 505 + 0 503 42817 105 1 11 59 47 78 25 0 2 38 0 1 43 1 0 26 0 1 52 14 13 49 chain 538693 chrX 156040895 + 98300361 98306361 L1PA3long 6157 + 19 6157 1415 133 11 12 398 0 1 213 0 128 237 0 4 571 1 0 992 0 3 465 0 1 1068 0 2 998 1 0 912 chain 13930 chrX 156040895 + 98331194 98331527 L1PB1 5432 + 5120 5422 63703 18 1 0 4 3 2 13 17 11 52 2 1 10 6 5 44 1 0 16 1 0 4 2 0 11 12 3 12 30 25 19 1 0 21 1 0 13 1 0 18 chain 4763 chrX 156040895 + 98353147 98353243 MER3 215 + 68 182 86899 38 22 34 16 1 7 19 chain 52789 chrX 156040895 + 98358380 98358971 L1P1 4361 + 3728 4317 28643 423 1 0 154 1 0 12 chain 4558 chrX 156040895 + 98381452 98381567 MER92B 628 + 0 114 88031 42 47 46 26 chain 244949 chrX 156040895 + 98393894 98396823 L1PA7 6471 + 3531 6458 8351 19 0 4 57 4 5 554 7 8 234 15 0 73 0 1 88 1 0 4 0 1 92 0 4 280 1 0 666 0 3 834 chain 3663 chrX 156040895 + 98399960 98400004 MLT1E2 623 + 69 113 93894 44 chain 244326 chrX 156040895 + 98414996 98417794 L1PA4 6152 + 0 5971 8370 1609 0 1 154 0 16 62 0 3155 417 5 0 30 0 6 521 chain 4177 chrX 156040895 + 98534106 98534171 L1MA1 4479 + 345 409 90278 38 6 5 21 chain 27946 chrX 156040895 + 98537406 98537854 MLT2A2 560 + 0 560 44958 144 85 88 67 0 2 8 0 107 144 chain 37661 chrX 156040895 + 98640717 98641159 L1PA7 6471 + 6022 6464 36297 290 1 0 76 0 1 75 chain 32898 chrX 156040895 + 98655060 98655521 MLT2A1 477 + 0 477 39592 169 4 1 34 0 1 177 1 3 10 33 49 33 chain 454246 chrX 156040895 + 98655521 98661143 HERVL-int 5654 + 0 5654 4283 81 0 2 783 1 6 9 3 4 51 12 10 29 0 2 94 0 1 46 1 0 60 0 2 44 1 0 497 0 2 330 1 0 298 1 0 1020 0 1 331 0 1 205 0 4 293 0 3 7 0 1 350 1 0 575 0 6 56 0 1 17 1 0 192 0 8 232 chain 31904 chrX 156040895 + 98661143 98661588 MLT2A1 477 + 0 477 40411 165 8 5 34 0 1 180 23 57 35 chain 216083 chrX 156040895 + 98668296 98670665 L1PA3long 6157 + 3781 6155 9149 660 0 1 862 0 4 847 chain 118881 chrX 156040895 + 98819361 98820717 L1P2 5180 + 2081 3437 15728 1356 chain 8582 chrX 156040895 + 98864928 98865784 MER50 708 + 0 696 73490 47 724 563 15 0 1 70 chain 435741 chrX 156040895 + 98880665 98886868 L1PA8A 6298 + 65 6273 4649 5 2 0 7 6 0 23 3 0 19 19 10 18 2 1 9 2 1 18 6 4 9 2 0 11 2 0 8 1 0 6 37 32 12 5 0 8 2 0 31 26 25 8 8 0 77 2 0 16 1 0 8 6 4 11 0 12 57 1 0 293 4 0 12 5 19 147 1 2 77 8 0 46 0 3 18 6 4 93 2 3 34 0 3 5 11 12 435 1 2 244 21 24 367 6 5 78 9 11 32 2 17 31 0 2 88 17 13 60 1 0 4 9 11 259 0 4 133 0 7 60 0 1 198 2 0 138 0 230 13 235 8 23 11 12 75 0 1 953 10 8 56 1 4 161 1 2 268 0 1 164 2 6 85 21 20 673 chain 39344 chrX 156040895 + 98925642 98926129 L1PA8A 6298 + 4336 4825 35118 11 0 1 92 5 6 379 chain 118490 chrX 156040895 + 98926131 98927569 L1PA8A 6298 + 4825 6289 15809 518 0 5 140 0 3 74 7 8 4 1 0 438 1 18 157 0 1 98 chain 18871 chrX 156040895 + 98998355 98998596 THE1B-int 1605 + 36 282 57684 218 1 6 22 chain 27015 chrX 156040895 + 99052753 99053105 THE1A 353 + 0 353 46245 68 0 3 13 2 1 25 1 0 119 0 1 4 1 0 119 chain 118226 chrX 156040895 + 99053105 99054626 THE1A-int 1579 + 0 1557 15844 123 0 10 76 0 1 151 5 6 49 0 1 5 0 2 80 3 0 5 0 3 158 9 16 230 6 21 292 1 0 328 chain 38011 chrX 156040895 + 99074604 99075219 L1PB1 5432 + 4836 5427 36063 10 0 8 249 3 0 10 2 1 27 0 3 13 6 2 9 2 0 51 3 2 10 6 5 45 2 1 14 14 2 29 2 0 5 2 1 13 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 37292 chrX 156040895 + 99106908 99107356 L1PA6 6164 + 5707 6156 36553 295 1 2 152 chain 19474 chrX 156040895 + 99174821 99175053 THE1-int 844 + 406 638 57063 232 chain 115131 chrX 156040895 + 99200415 99201980 THE1B-int 1605 + 0 1605 16370 432 3 28 141 0 1 103 6 7 28 57 57 112 0 10 37 11 12 35 16 18 351 4 5 52 1 0 176 chain 4990 chrX 156040895 + 99222069 99222126 LTR40a 516 + 406 463 85704 57 chain 511222 chrX 156040895 + 99234633 99240354 L1PA4 6152 + 20 5743 2699 1014 1 0 26 0 2 393 1 0 858 1 0 1376 1 0 976 1 0 391 0 1 245 1 5 436 chain 9146 chrX 156040895 + 99317851 99317970 THE1B-int 1605 + 35 561 72244 105 0 407 14 chain 151755 chrX 156040895 + 99322610 99324546 L1PA8 5853 + 3903 5849 12241 312 4 3 187 0 7 75 0 1 251 1 0 270 0 6 225 0 3 276 8 9 36 1 0 32 18 16 67 10 9 52 2 1 19 1 0 89 chain 181666 chrX 156040895 + 99327405 99329930 MER4-int 2692 + 14 2533 10517 22 2 0 6 7 8 37 11 5 7 2 0 9 0 2 95 0 1 138 4 6 827 0 1 8 7 10 18 1 0 36 1 0 145 0 16 5 2 1 48 6 12 110 0 4 167 0 1 11 13 15 16 32 0 89 0 2 9 1 0 34 8 7 8 0 1 67 1 5 239 0 2 11 8 0 10 2 3 245 chain 60430 chrX 156040895 + 99338232 99338892 L1P1 4361 + 2768 3428 26256 660 chain 91553 chrX 156040895 + 99355678 99356951 L1PA10 4194 + 2824 4160 19405 199 7 6 94 7 1 5 0 1 427 0 1 125 1 2 83 25 96 249 13 10 27 1 0 10 chain 123545 chrX 156040895 + 99402534 99403879 L1PA3long 6157 + 4016 5361 14925 1345 chain 46014 chrX 156040895 + 99447375 99447982 MER41B 635 + 0 635 31055 92 1 0 13 0 24 58 0 1 5 1 0 357 10 15 70 chain 114867 chrX 156040895 + 99486004 99487279 L1PA3long 6157 + 4369 5641 16402 524 15 13 111 1 0 624 chain 55361 chrX 156040895 + 99528871 99529676 L1PA11 4918 + 3576 4464 27757 90 1 0 163 20 123 152 4 5 157 1 3 59 6 0 65 2 1 12 3 0 6 12 0 52 chain 162472 chrX 156040895 + 99591358 99593704 L1PB1 5432 + 3140 5422 11580 34 0 1 451 1 0 101 9 5 197 0 3 60 11 10 13 7 6 293 0 5 279 1 2 25 7 4 192 10 6 30 5 0 241 46 22 17 4 3 6 1 0 12 5 1 10 3 1 50 2 1 16 1 0 44 2 1 14 26 14 17 2 0 5 19 16 22 1 0 22 1 0 12 1 0 18 chain 62249 chrX 156040895 + 99618508 99619258 L1PA8 5853 + 4147 4890 25805 67 7 0 7 0 1 444 1 0 224 chain 102558 chrX 156040895 + 99669908 99671265 L1PA8 5853 + 4490 5853 18001 68 33 33 183 4 0 235 0 2 107 1 0 271 0 10 115 1 0 50 1 0 29 0 5 11 2 0 58 0 1 10 12 10 10 1 2 40 2 1 19 1 0 93 chain 43656 chrX 156040895 + 99676110 99676630 L1PA8A 6298 + 5745 6291 32346 388 0 25 26 1 0 7 0 2 98 chain 21356 chrX 156040895 + 99681928 99682179 L1PA7 6471 + 6210 6462 54694 243 0 1 8 chain 43074 chrX 156040895 + 99727334 99728270 L1PB1 5432 + 4645 5409 32731 45 25 0 77 4 5 32 1 0 81 1 0 217 0 3 9 111 0 24 1 0 9 1 0 9 6 2 9 2 0 52 1 0 18 1 0 42 2 1 16 3 0 8 20 4 19 24 19 24 1 0 21 1 0 13 1 0 5 chain 87945 chrX 156040895 + 99793333 99794420 MER11B 1079 + 0 1079 20060 225 0 5 29 3 0 66 2 1 258 12 11 174 6 0 149 1 0 146 5 4 11 chain 513466 chrX 156040895 + 99805562 99811344 L1PA5 6144 + 359 6139 2600 1073 6 4 272 0 1 1468 0 1 2116 1 0 599 1 0 246 chain 69134 chrX 156040895 + 99816515 99817291 L1PA3long 6157 + 5380 6155 24190 80 4 3 692 chain 116433 chrX 156040895 + 99840597 99841937 L1PA5 6144 + 3689 5040 16148 547 1 0 138 0 9 64 0 3 590 chain 94000 chrX 156040895 + 99841938 99843025 L1PA5 6144 + 5040 6132 19037 935 0 1 13 4 8 135 chain 5611 chrX 156040895 + 99847555 99847647 L1MA3 4352 + 4223 4311 82753 35 2 0 24 1 0 4 0 3 6 4 0 16 chain 160025 chrX 156040895 + 99864358 99866120 L1PA3long 6157 + 4395 6157 11754 1762 chain 27973 chrX 156040895 + 99866698 99867075 THE1C 375 + 0 375 44914 178 3 0 6 1 3 163 1 0 25 chain 151028 chrX 156040895 + 99877273 99879081 L1PA7 6471 + 4660 6468 12287 276 0 1 366 4 0 311 0 3 851 chain 126297 chrX 156040895 + 99902249 99903820 L1PB1 5432 + 3528 5103 14508 135 0 3 63 14 10 73 0 2 98 8 9 41 1 0 373 0 5 286 2 0 477 chain 185246 chrX 156040895 + 99926787 99928983 L1PA7 6471 + 4266 6461 10326 291 1 3 412 8 7 645 2 0 837 chain 50373 chrX 156040895 + 99942674 99943255 L1PA7 6471 + 5888 6461 29421 353 8 0 220 chain 37434 chrX 156040895 + 99964452 99964879 L1PA4 6152 + 5715 6143 36455 323 0 1 104 chain 28798 chrX 156040895 + 100015178 100015549 THE1B 368 + 0 368 43629 172 2 1 27 2 0 168 chain 29333 chrX 156040895 + 100017125 100017496 THE1B 368 + 0 368 42831 173 1 0 27 2 0 168 chain 463766 chrX 156040895 + 100050784 100055959 L1PA4 6152 + 6 5186 4027 1054 0 2 1369 0 4 857 1 0 1894 chain 4871 chrX 156040895 + 100100456 100100700 L1MD3 1191 + 917 1139 86314 31 168 146 45 chain 15521 chrX 156040895 + 100114833 100115032 L1PA6 6164 + 5955 6157 61624 47 6 9 146 chain 550686 chrX 156040895 + 100134937 100140964 L1PA2 6032 + 0 6032 692 255 2 1 4922 0 1 688 0 5 160 chain 27669 chrX 156040895 + 100144037 100144402 THE1C 375 + 0 372 45371 15 0 6 159 12 14 155 1 0 23 chain 101695 chrX 156040895 + 100144407 100145841 THE1C-int 1605 + 2 1592 18100 10 4 3 96 7 60 63 2 1 92 1 7 89 0 3 19 6 13 57 17 16 68 5 3 176 4 5 134 21 112 192 0 1 127 4 3 240 chain 24190 chrX 156040895 + 100145854 100146205 THE1C 375 + 0 347 50510 109 18 15 60 12 11 152 chain 102367 chrX 156040895 + 100165179 100166286 L1PA2 6032 + 4584 5695 18022 598 0 4 509 chain 30502 chrX 156040895 + 100166286 100166624 L1PA2 6032 + 5696 6032 41567 331 2 0 5 chain 53328 chrX 156040895 + 100167133 100167715 L1PA2 6032 + 3921 4507 28460 308 0 4 274 chain 141526 chrX 156040895 + 100167716 100169237 L1PA2 6032 + 4507 6028 12981 1521 chain 286875 chrX 156040895 + 100178416 100182812 L1PB1 5432 + 1657 5419 7234 496 1 0 4 1 2 186 1 0 153 4 0 158 1 0 127 24 1 50 1 0 259 3 0 149 6 1 22 0 1 444 1 0 8 3 6 115 562 0 274 2 0 56 1 0 366 0 2 80 11 4 482 1 2 9 3 0 24 1 0 9 1 0 6 12 8 6 2 0 53 2 1 16 1 0 43 1 0 15 1 0 5 2 0 8 9 0 16 11 8 14 2 0 24 1 0 22 0 3 9 1 0 15 chain 33169 chrX 156040895 + 100180634 100181147 MLT2A1 477 + 0 477 39388 142 0 1 26 1 5 30 0 4 174 1 3 9 3 0 5 0 1 10 1 0 6 6 0 10 48 10 41 chain 6592 chrX 156040895 + 100221977 100222070 L1MA5 2750 + 2570 2661 79001 60 1 0 16 1 0 15 chain 79446 chrX 156040895 + 100235091 100236066 L1PA8A 6298 + 5316 6288 21754 14 8 7 16 0 1 135 3 1 14 1 0 784 chain 233463 chrX 156040895 + 100251415 100254899 L1PA13 3608 + 95 3548 8651 12 8 6 23 4 1 27 3 2 11 3 0 28 26 15 17 6 8 46 2 0 48 7 11 66 21 23 6 2 0 14 9 6 16 1 0 17 2 0 18 2 0 17 1 0 98 2 0 125 0 1 80 0 3 186 1 0 62 0 1 23 3 4 281 11 6 110 16 20 414 2 0 174 2 1 119 1 0 191 0 1 160 1 3 18 45 46 93 7 21 191 5 17 148 9 8 21 1 0 112 3 0 64 8 7 20 2 0 24 1 0 10 2 0 47 9 5 19 1 0 16 0 3 11 18 7 14 1 0 6 7 1 10 1 0 3 2 0 10 chain 559285 chrX 156040895 + 100255486 100261629 L1PA3long 6157 + 5 6156 190 4848 6 16 1281 2 0 6 chain 482599 chrX 156040895 + 100266530 100272374 L1PA7 6471 + 0 6468 3579 167 11 10 4 0 1 229 0 1 262 9 10 474 0 2 267 0 13 329 0 4 363 0 1 227 0 1 202 18 19 27 1 2 17 0 2 423 0 567 224 0 3 89 0 30 31 2 1 637 1 0 559 0 1 99 1 0 5 1 2 242 0 1 73 1 0 838 2 0 9 chain 5001 chrX 156040895 + 100284012 100284093 L1PB 1623 + 1086 1169 85650 13 12 14 56 chain 3834 chrX 156040895 + 100302448 100302493 MER8 282 + 3 47 92603 27 1 0 17 chain 377161 chrX 156040895 + 100304130 100309527 L1PB1 5432 + 17 5426 5530 9 6 0 280 7 6 377 1 2 32 1 0 19 3 9 10 13 8 473 0 4 140 43 52 174 2 1 67 1 6 427 0 2 18 0 2 363 3 0 42 5 4 12 4 10 253 0 1 4 1 0 12 30 40 304 12 16 435 2 1 57 0 2 34 11 16 30 1 0 250 0 1 17 21 22 97 6 10 36 0 2 160 0 1 113 0 7 140 3 0 170 1 9 123 6 9 33 0 9 15 21 21 66 56 32 4 1 0 18 1 0 6 3 2 11 19 13 52 18 16 45 1 0 15 2 0 6 59 44 24 1 0 22 1 0 12 1 0 18 1 0 4 chain 26298 chrX 156040895 + 100338058 100338364 AluYa5 310 + 0 304 47272 64 3 1 239 chain 101499 chrX 156040895 + 100452572 100454015 THE1D-int 1627 + 0 1622 18127 38 5 7 109 6 19 124 0 1 50 0 102 231 0 1 20 1 2 63 6 2 68 22 96 220 16 18 14 23 7 385 1 0 14 1 4 16 1 2 9 chain 39020 chrX 156040895 + 100472617 100473245 L1PA13 3608 + 2871 3485 35345 81 1 3 31 1 0 4 0 1 141 6 5 17 10 9 18 0 1 21 4 1 59 12 10 62 1 0 51 2 0 11 14 12 35 8 4 18 1 0 19 chain 25871 chrX 156040895 + 100480359 100480658 AluYk4 311 + 2 300 47912 130 1 0 168 chain 35902 chrX 156040895 + 100505114 100505600 MLT2A1 477 + 0 477 37475 169 4 1 215 47 41 51 chain 61688 chrX 156040895 + 100533965 100534677 L1PA6 6164 + 5447 6162 25944 53 0 3 659 chain 79949 chrX 156040895 + 100549145 100550235 L1MA2 4263 + 2234 3324 21637 246 0 1 27 1 0 9 1 2 9 23 29 87 1 0 57 5 0 73 0 1 7 2 0 124 3 4 239 0 1 83 6 4 87 chain 556750 chrX 156040895 + 100550262 100557541 L1PA2 6032 + 0 6032 310 3170 1 0 2009 1 0 1 1245 0 852 chain 96202 chrX 156040895 + 100555450 100556654 SVA_D 2077 + 960 2056 18751 30 1 0 40 1 0 6 35 10 6 1 0 41 1 0 120 1 0 175 0 1 4 1 0 8 78 0 655 chain 2178 chrX 156040895 + 100555528 100555563 SVA_D 2077 + 748 783 35431 35 chain 4855 chrX 156040895 + 100555921 100555999 SVA_D 2077 + 1098 1176 35431 78 chain 51533 chrX 156040895 + 100617323 100618125 L1PA11 4918 + 3659 4578 29030 207 0 156 110 1 2 5 1 0 189 5 0 67 2 1 9 5 1 38 11 1 30 4 2 11 1 0 20 45 32 14 1 0 13 2 0 11 chain 23808 chrX 156040895 + 100707950 100708226 L1PA7 6471 + 6183 6467 51090 53 0 2 75 0 1 116 0 5 32 chain 2941 chrX 156040895 + 100708672 100708729 MIRb 242 + 30 86 100493 31 14 13 12 chain 150506 chrX 156040895 + 100723148 100724886 SVA_D 2077 + 63 2077 12316 421 0 76 140 0 40 176 5 42 34 0 1 4 0 1 11 0 51 43 0 78 39 1 0 127 1 0 41 0 1 4 13 8 44 1 0 501 1 0 131 chain 57131 chrX 156040895 + 100733595 100735315 Tigger1 2417 + 1549 2358 27219 191 315 9 59 11 13 72 307 0 326 304 0 22 0 5 5 2 0 65 1 2 40 chain 23762 chrX 156040895 + 100735391 100735673 AluY 311 + 8 291 51174 117 1 2 164 chain 155787 chrX 156040895 + 100756942 100761425 L1PB1 5432 + 2967 5430 12017 39 1 2 6 2 0 126 1 9 391 1 3 40 0 1 138 415 68 100 1321 0 72 5 6 16 0 1 184 1 0 57 4 1 78 0 1 4 0 1 66 12 11 99 9 7 75 5 1 58 3 0 80 2 0 104 23 26 121 6 1 6 0 8 28 12 3 98 1 4 7 3 0 24 1 0 6 1 0 13 18 12 43 10 9 11 1 4 43 361 30 17 5 2 18 2 0 24 1 0 21 2 1 12 1 0 18 1 0 4 1 0 4 chain 3431 chrX 156040895 + 100774924 100774963 L1PB1 5432 + 5064 5103 95806 39 chain 3308 chrX 156040895 + 100775027 100775073 L1PB1 5432 + 5114 5158 96933 24 1 0 8 1 0 12 chain 15014 chrX 156040895 + 100775078 100775375 L1PB1 5432 + 5159 5427 62253 8 2 0 53 18 16 44 1 0 16 2 0 6 17 6 23 2 0 15 8 4 20 1 0 21 1 0 13 1 0 18 2 0 5 chain 42008 chrX 156040895 + 100784733 100785314 PRIMA4_LTR 623 + 0 623 33355 175 1 24 62 8 9 90 5 9 13 1 8 155 5 7 49 0 5 17 chain 39900 chrX 156040895 + 100799407 100801084 PRIMA4_LTR 623 + 2 623 34739 23 2 0 150 1 24 61 2 3 102 0 4 10 1111 23 43 0 1 107 0 2 21 1 4 43 chain 2103 chrX 156040895 + 100800834 100800867 PRIMA4_LTR 623 + 311 340 105783 17 4 0 12 chain 7895 chrX 156040895 + 100840388 100840529 MER20 218 + 91 218 75120 62 37 23 42 chain 3073 chrX 156040895 + 100866581 100866622 MADE1 96 + 5 46 99051 41 chain 66315 chrX 156040895 + 100879524 100880326 L1PA8 5853 + 5058 5853 24868 506 1 0 44 2 0 70 2 1 14 6 5 42 2 1 19 1 0 93 chain 6432 chrX 156040895 + 100953988 100954105 L1MB8 1703 + 954 1069 79561 56 29 27 32 chain 28783 chrX 156040895 + 100960816 100961123 AluYa5 310 + 0 305 43655 97 2 0 208 chain 7398 chrX 156040895 + 100991824 100992042 L1MA4 2864 + 2612 2807 76398 25 4 0 33 102 78 14 0 5 40 chain 5737 chrX 156040895 + 100999763 100999922 MER5B 177 + 15 163 82193 22 1 0 7 1 0 8 12 13 36 34 28 9 1 0 15 3 0 10 chain 29469 chrX 156040895 + 101066715 101067055 L1PA6 6164 + 5822 6162 42641 340 chain 25371 chrX 156040895 + 101073306 101073598 AluSp 311 + 9 304 48664 82 0 3 210 chain 10779 chrX 156040895 + 101076839 101076984 LTR8 732 + 583 732 68899 25 0 3 17 4 5 99 chain 11212 chrX 156040895 + 101116209 101116379 MER30 238 + 0 210 68228 18 1 19 68 6 23 11 1 0 22 0 6 43 chain 20780 chrX 156040895 + 101173587 101173863 L1PA16 3655 + 881 1161 55392 43 0 1 86 0 1 4 0 1 23 1 0 52 0 2 67 chain 5738 chrX 156040895 + 101274104 101274169 MER6B 211 - 0 65 82189 65 chain 26923 chrX 156040895 + 101274552 101274964 MER6A 605 + 178 579 46374 58 43 37 148 1 0 121 8 4 33 chain 408393 chrX 156040895 + 101326988 101334840 L1PB1 5432 + 63 5414 5041 490 652 30 603 351 48 160 310 11 126 24 0 121 312 0 129 4 5 305 1 0 4 0 1 397 7 0 195 7 8 141 618 0 60 0 10 165 9 10 21 312 0 399 0 1 224 3 5 743 0 4 48 0 2 99 3 0 65 0 9 147 8 9 156 0 2 78 22 20 20 1 0 13 1 0 11 4 0 10 2 0 50 2 1 17 1 0 44 1 0 16 3 0 6 16 6 19 2 0 5 1 0 13 3 1 24 1 0 4 2 1 16 1 0 13 1 0 10 chain 4732 chrX 156040895 + 101368096 101368202 MIR 256 + 84 201 87064 33 1 0 6 0 1 17 32 43 17 chain 25526 chrX 156040895 + 101384319 101384623 AluSp 311 + 4 300 48445 224 8 0 72 chain 315217 chrX 156040895 + 101471544 101474981 L1HS 6032 + 601 4038 6499 3437 chain 519041 chrX 156040895 + 101524342 101530490 L1PA6 6164 + 0 6161 2315 195 0 1 190 7 22 92 15 14 419 0 4 439 28 0 148 4 20 779 4 5 63 0 2 601 0 1 88 0 1 100 6 7 503 1 0 3 1 0 357 0 1 834 0 1 1271 chain 95645 chrX 156040895 + 101539781 101540858 L1PA5 6144 + 4955 6033 18823 1046 0 1 31 chain 490689 chrX 156040895 + 101540955 101546364 L1PA3long 6157 + 620 6157 3403 156 0 128 5253 chain 327313 chrX 156040895 + 101566556 101570659 L1P3 4156 + 0 4136 6262 203 4 0 6 0 4 30 0 1 7 2 1 24 1 0 5 1 2 37 2 1 88 5 0 165 10 7 158 0 5 34 2 1 37 1 2 43 6 5 163 0 2 197 0 4 17 13 32 404 1 4 137 3 0 86 1 3 371 0 1 230 0 2 109 0 2 7 0 1 66 0 1 841 0 4 23 0 1 212 0 2 319 2 0 7 2 1 21 chain 20368 chrX 156040895 + 101570789 101571057 L1PA7 6471 + 6168 6451 55930 38 1 0 6 0 1 99 1 2 43 0 14 80 chain 232649 chrX 156040895 + 101646035 101648623 L1PA5 6144 + 3551 6141 8677 186 0 2 2402 chain 164660 chrX 156040895 + 101699250 101701803 L1MA1 4479 + 1698 4193 11442 142 9 7 34 1 2 201 10 8 45 0 4 21 4 0 66 1 0 150 3 0 75 0 1 4 1 0 144 1 0 4 14 4 29 2 0 28 9 8 96 2 0 33 1 0 51 1 0 7 0 4 92 1 0 28 2 0 101 7 10 38 1 0 6 0 1 7 7 6 85 15 14 11 3 1 50 6 1 72 2 0 131 1 0 15 15 14 4 0 1 154 0 1 5 1 0 25 2 0 5 2 1 10 1 0 11 1 0 60 1 0 5 18 16 6 0 1 5 1 0 64 0 3 20 31 27 101 5 4 29 2 0 35 1 0 9 1 0 11 4 1 9 7 0 16 1 0 5 chain 39822 chrX 156040895 + 101710213 101710762 MER41A 554 + 0 554 34800 42 0 1 44 5 6 120 3 5 212 15 16 108 chain 100643 chrX 156040895 + 101738448 101739683 SVA_A 1864 + 0 1722 18222 13 1 0 8 1 0 485 0 376 141 3 0 21 17 124 103 50 59 392 chain 16776 chrX 156040895 + 101796460 101796705 L1PA15 4387 + 2771 3006 60062 72 0 2 88 15 4 53 1 0 16 chain 162856 chrX 156040895 + 101825912 101827827 L1PA5 6144 + 4195 6077 11555 156 1 3 125 49 0 149 3 0 855 0 3 54 1 0 448 5 10 50 0 10 19 chain 26929 chrX 156040895 + 101858398 101858683 L1HS 6032 + 5747 6032 46359 285 chain 26369 chrX 156040895 + 101867737 101868033 L1PA4 6152 + 5855 6151 47164 296 chain 130624 chrX 156040895 + 101869120 101870570 L1PA3long 6157 + 4702 6157 13964 608 0 4 509 1 2 332 chain 120092 chrX 156040895 + 101872998 101874388 L1PA4 6152 + 4587 5970 15525 48 1 0 170 5 0 261 2 0 777 0 1 126 chain 30962 chrX 156040895 + 101897160 101897500 L1PA2 6032 + 5689 6030 41158 31 0 1 309 chain 81941 chrX 156040895 + 101911019 101917280 L1MA1 4479 + 228 4103 21257 54 2 0 61 0 1 4 0 1 11 5 0 57 0 4 256 0 3 20 0 4 39 4892 2523 50 5 0 73 3 0 131 5 4 75 8 2 114 1 0 24 2 0 14 8 7 62 8 7 16 0 2 12 1 0 85 15 11 34 5 6 79 5 4 25 chain 47067 chrX 156040895 + 101915724 101916402 L1PA8 5853 + 5176 5853 30625 106 11 12 270 1 0 45 4 3 70 8 6 11 5 6 35 2 1 19 1 0 19 0 3 71 chain 164568 chrX 156040895 + 101940682 101942493 L1PA3long 6157 + 3551 5361 11450 137 2 1 1672 chain 455341 chrX 156040895 + 101950509 101956326 L1PA8 5853 + 50 5853 4250 22 2 0 10 63 26 197 15 3 837 1 0 188 0 4 124 0 1 30 0 1 138 3 4 181 0 10 80 0 2 118 23 6 97 0 1 166 0 1 188 4 8 388 2 1 54 18 19 353 0 4 7 2 0 64 0 2 481 20 22 68 1 0 7 0 1 196 2 11 346 0 5 60 0 1 372 0 13 41 2 0 250 1 2 303 1 0 18 1 5 18 5 3 70 12 10 55 1 0 17 2 1 92 chain 288570 chrX 156040895 + 101994202 101997395 L1PA3long 6157 + 2960 6156 7177 1500 0 1 1547 2 1 133 0 3 11 chain 447309 chrX 156040895 + 102031446 102036489 L1PA4 6152 + 0 5049 4427 498 0 7 739 1 0 3805 chain 8231 chrX 156040895 + 102037640 102037735 L1PA8 5853 + 2118 2213 74321 95 chain 22103 chrX 156040895 + 102037736 102038008 L1PA8 5853 + 2213 2485 53691 272 chain 29457 chrX 156040895 + 102038012 102038393 L1PA8 5853 + 2493 2877 42658 98 0 1 105 0 2 178 chain 2926 chrX 156040895 + 102038399 102038439 L1PA8 5853 + 2882 2926 100619 24 0 4 16 chain 23674 chrX 156040895 + 102038440 102038736 L1PA8 5853 + 2926 3230 51318 234 0 8 62 chain 10992 chrX 156040895 + 102038752 102038890 L1PA8 5853 + 3249 3387 68566 138 chain 90046 chrX 156040895 + 102038891 102039991 L1PA8 5853 + 3387 4485 19674 953 2 0 145 chain 31208 chrX 156040895 + 102040048 102040444 L1PA8 5853 + 4540 4937 40968 85 2 1 56 0 1 4 5 6 244 chain 17143 chrX 156040895 + 102040445 102040687 L1PA8 5853 + 4939 5188 59645 67 1 6 72 14 16 88 chain 27568 chrX 156040895 + 102040687 102041060 L1PA8 5853 + 5189 5564 45490 154 6 8 213 chain 8913 chrX 156040895 + 102041061 102041169 L1PA8 5853 + 5564 5670 72754 44 2 0 62 chain 3457 chrX 156040895 + 102041211 102041262 L1PA8 5853 + 5710 5760 95568 34 1 0 16 chain 6745 chrX 156040895 + 102041263 102041352 L1PA8 5853 + 5760 5853 78491 49 0 4 40 chain 7869 chrX 156040895 + 102051315 102051399 L1PA3long 6157 + 2075 2159 75203 84 chain 60053 chrX 156040895 + 102052772 102053476 L1PA7 6471 + 5755 6461 26356 49 1 2 507 0 1 147 chain 10273 chrX 156040895 + 102059203 102059342 L1PREC2 3366 + 2399 2532 69860 9 1 0 110 5 0 14 chain 187723 chrX 156040895 + 102064088 102066627 MER4-int 2692 + 87 2692 10224 12 1 0 9 4 5 8 2 0 4 0 1 18 0 1 231 30 0 348 0 1 47 0 7 6 8 1 76 0 2 241 1 0 252 0 1 22 1 17 56 1 0 8 6 9 287 0 1 23 0 4 106 1 0 110 1 0 4 4 3 108 0 2 31 6 72 41 21 16 10 1 0 268 0 1 9 1 11 115 chain 218566 chrX 156040895 + 102097865 102101084 L1PA10 4194 + 271 3251 9079 16 1 0 6 38 13 7 1 0 24 2 0 16 1 0 10 1 0 8 5 0 9 1 0 15 7 0 8 5 4 81 3 0 311 232 49 296 4 8 5 5 0 6 0 1 12 0 4 273 4 5 534 0 1 229 0 4 371 1 0 25 59 43 12 0 4 347 3 1 102 3 0 120 chain 22952 chrX 156040895 + 102108847 102109144 THE1B-int 1605 + 0 300 52437 11 3 6 283 chain 45366 chrX 156040895 + 102112167 102112663 L1PA3long 6157 + 4907 5404 31385 399 0 1 97 chain 26666 chrX 156040895 + 102184397 102184726 L1PA5 6144 + 5816 6144 46733 165 8 9 142 3 1 11 chain 367883 chrX 156040895 + 102264895 102290856 L1PA4 6152 + 1598 6140 5698 1837 2 1 102 4 2 1679 1 0 8 0 1 284 21416 0 628 chain 16162 chrX 156040895 + 102290022 102290204 L1PA4 6152 + 5302 5487 60799 91 0 3 91 chain 16992 chrX 156040895 + 102332875 102333155 Tigger3c 601 + 31 535 59810 18 31 244 15 0 1 31 12 22 173 chain 3238 chrX 156040895 + 102352047 102352101 L1MA4 2864 + 2746 2801 97588 21 5 6 28 chain 93986 chrX 156040895 + 102395583 102398552 L1PB2 3958 + 2511 3838 19039 207 3 0 206 1 0 132 1 0 14 2 0 56 5 6 40 1601 6 131 7 5 45 2 0 18 4 1 48 21 1 11 2 0 13 6 0 94 1 0 72 1 0 64 1 0 72 2 0 16 7 6 63 chain 66877 chrX 156040895 + 102397095 102397840 L1PA4 6152 + 4551 5296 24728 745 chain 269879 chrX 156040895 + 102407538 102411550 L1MA1 4479 + 231 4127 7707 46 1 0 83 22 0 22 10 9 311 7 9 5 2 0 73 15 0 100 10 1 285 1 0 7 5 7 528 5 0 124 8 20 178 0 3 48 2 0 5 7 4 63 4 0 97 3 0 67 1 0 20 0 11 152 8 8 85 20 0 63 2 1 95 13 11 32 1 0 34 2 0 28 7 6 86 1 0 27 2 0 156 5 4 13 2 0 6 17 12 72 4 3 12 5 0 52 5 0 74 3 0 101 19 10 20 3 0 58 0 3 91 46 45 22 2 0 16 1 0 42 0 1 5 1 0 4 4 3 12 6 5 20 2 0 12 1 0 86 16 12 121 1 0 27 2 0 22 chain 535554 chrX 156040895 + 102450495 102456624 L1PA3long 6157 + 11 6151 1590 103 0 1 4 1 0 459 0 1 128 0 7 859 1 2 817 0 4 781 1 0 1615 19 18 1193 7 0 10 6 13 125 chain 117469 chrX 156040895 + 102498324 102499860 THE1B-int 1605 + 0 1600 15977 12 5 6 279 0 1 80 17 81 142 1 0 41 0 1 206 11 9 344 3 2 148 0 1 247 chain 299799 chrX 156040895 + 102522141 102525952 L1PA8A 6298 + 2231 6187 6837 155 0 1 121 0 2 17 0 136 414 0 1 92 0 8 301 1 0 219 2 0 176 1 2 91 1 2 272 1 2 111 0 1 75 4 5 47 25 10 333 9 8 14 0 1 237 1 20 210 0 1 4 1 0 70 6 0 99 6 9 50 0 4 21 2 0 83 8 0 531 chain 70249 chrX 156040895 + 102533436 102534835 L1M1 2793 + 619 1991 23938 16 82 30 22 101 111 33 11 8 44 53 50 47 20 23 166 21 28 53 4 0 12 36 29 71 0 1 65 12 28 97 1 0 4 17 5 232 12 13 77 1 11 44 0 7 45 chain 17454 chrX 156040895 + 102535239 102535488 L1PA8 5853 + 5608 5853 59288 70 2 1 9 1 0 52 2 1 19 1 0 93 chain 4874 chrX 156040895 + 102569999 102570059 L1MA5A 2387 + 2230 2290 86295 60 chain 525348 chrX 156040895 + 102574300 102580440 L1PA3long 6157 + 8 6152 2030 73 13 1 483 9 10 135 0 7 973 1 2 661 1 0 97 0 2 2587 0 1 270 0 4 591 0 1 246 chain 53662 chrX 156040895 + 102588061 102588642 L1PA2 6032 + 3990 4571 28341 581 chain 12152 chrX 156040895 + 102590173 102590460 L1MA4 2864 + 2545 2801 66567 55 11 13 30 1 3 29 3 0 19 79 49 22 3 1 35 chain 21667 chrX 156040895 + 102597313 102597582 L1PA10 4194 + 3896 4161 54269 220 3 0 34 1 0 11 chain 131856 chrX 156040895 + 102616305 102617732 L1PA2 6032 + 4403 5831 13840 1308 0 1 119 chain 75683 chrX 156040895 + 102634481 102635618 L1PA14 3548 + 2367 3485 22663 96 1 0 74 2 0 6 2 3 143 2 1 54 0 8 162 1 0 24 3 1 9 7 5 47 9 5 14 0 4 87 12 8 13 2 0 5 2 1 84 1 0 8 0 1 17 1 0 83 1 0 12 5 1 34 5 3 13 1 0 5 1 0 14 0 5 38 6 0 10 1 0 20 chain 9359 chrX 156040895 + 102639970 102640201 MLT1C 463 + 64 298 71786 30 29 30 9 3 2 53 5 7 31 35 37 16 1 0 19 chain 33975 chrX 156040895 + 102671364 102671730 L1PA2 6032 + 5168 5534 38726 366 chain 5584 chrX 156040895 + 102729842 102729912 L1MCb 1641 + 1179 1249 82880 70 chain 3489 chrX 156040895 + 102783393 102783432 L1M1 2793 + 959 998 95318 39 chain 48565 chrX 156040895 + 102787206 102787829 PRIMA4_LTR 623 + 0 623 30100 188 4 0 38 15 17 89 1 0 46 6 9 236 chain 31469 chrX 156040895 + 102881800 102882151 L1PA4 6152 + 5797 6151 40757 24 0 3 327 chain 276807 chrX 156040895 + 102912652 102916627 L1PB1 5432 + 780 5422 7528 142 7 11 45 1 0 153 11 11 55 3 1 183 47 38 36 0 2 257 0 2 81 7 8 693 4 0 84 0 5 181 50 80 38 0 3 61 2 1 62 0 1 154 0 1 31 0 1 41 1 0 92 44 641 41 11 92 56 0 4 175 5 11 255 0 4 14 3 0 5 14 4 187 12 11 180 0 2 87 33 14 40 6 2 9 2 0 51 1 0 17 0 1 45 1 0 14 2 0 6 15 6 16 43 38 8 1 0 22 2 1 11 1 0 18 chain 165899 chrX 156040895 + 103027460 103029467 L1PA6 6164 + 4136 6162 11339 13 0 9 377 0 1 113 7 17 11 2 3 635 1 0 89 1 0 294 0 2 6 2 0 456 chain 23231 chrX 156040895 + 103039175 103039452 L1PA8 5853 + 5099 5373 52035 5 3 0 269 chain 24034 chrX 156040895 + 103069954 103070281 Tigger1 2417 + 1741 2067 50750 246 0 1 57 12 10 12 chain 44476 chrX 156040895 + 103076482 103077049 PRIMA4_LTR 623 + 0 623 31841 87 0 1 100 4 0 140 0 57 58 1 0 77 1 4 99 chain 20327 chrX 156040895 + 103086146 103086382 AluY 311 + 8 254 55975 90 0 10 146 chain 38647 chrX 156040895 + 103093931 103094428 LTR12C 1709 + 0 534 35609 286 9 10 42 3 46 77 4 0 7 3 0 66 chain 64942 chrX 156040895 + 103096398 103097171 LTR17 781 + 0 773 25203 121 0 9 130 0 1 38 10 0 28 0 1 62 1 0 383 chain 46281 chrX 156040895 + 103101558 103102113 LTR19B 566 + 0 566 30930 295 11 0 213 6 28 30 chain 11930 chrX 156040895 + 103110369 103110523 MER50B 698 + 0 146 66952 129 8 0 17 chain 10141 chrX 156040895 + 103112641 103112811 MER4D1 891 + 283 449 70124 25 28 23 32 0 3 44 1 0 20 1 0 19 chain 467556 chrX 156040895 + 103131407 103136747 L1PA4 6152 + 12 5354 3922 610 0 1 1696 0 1 3034 chain 3271 chrX 156040895 + 103171613 103171652 MER74B 573 + 228 267 97291 39 chain 24666 chrX 156040895 + 103214221 103214490 AluY 311 + 0 276 49776 8 0 6 118 0 1 143 chain 5114 chrX 156040895 + 103219970 103220059 MLT1A0 366 + 262 352 85085 49 15 16 25 chain 38277 chrX 156040895 + 103238245 103238666 L1PA3long 6157 + 5734 6157 35859 274 0 2 147 chain 37495 chrX 156040895 + 103263612 103264144 L1PA8 5853 + 5329 5853 36401 117 10 11 107 1 0 46 2 0 68 14 12 4 0 1 45 2 1 6 1 0 15 3 0 91 chain 462090 chrX 156040895 + 103282498 103287717 L1PA4 6152 + 1 5221 4074 71 11 3 563 2 1 1327 0 1 587 0 1 695 0 3 160 0 4 763 0 1 1040 chain 4490 chrX 156040895 + 103299958 103300007 MLT2A1 477 + 428 477 88396 49 chain 33745 chrX 156040895 + 103381548 103381915 L1PA3long 6157 + 5199 5567 38888 355 0 1 12 chain 36738 chrX 156040895 + 103388712 103389162 MER4A1 472 + 0 472 36932 13 0 1 212 1 22 224 chain 7264 chrX 156040895 + 103437930 103438054 MER4B 649 + 121 296 76787 19 26 77 79 chain 28406 chrX 156040895 + 103511524 103511851 L1PA7 6471 + 6137 6469 44259 183 0 1 81 0 4 63 chain 4612 chrX 156040895 + 103511851 103511918 MLT1C 463 + 84 152 87735 35 4 5 28 chain 185088 chrX 156040895 + 103580774 103583278 L1PA11 4918 + 2052 4559 10332 193 0 4 32 5 0 9 0 10 28 0 1 35 0 1 170 16 6 87 1 0 91 1 0 403 3 1 398 12 0 19 0 1 538 1 0 28 3 32 68 6 8 79 11 13 48 0 1 39 1 0 11 3 1 23 0 4 38 6 4 12 1 0 20 4 0 9 10 5 11 10 6 15 1 0 5 chain 38103 chrX 156040895 + 103595196 103595663 MER9a3 513 + 44 513 35986 67 0 1 146 1 0 73 0 1 101 4 5 75 chain 35203 chrX 156040895 + 103614313 103614830 MLT2A2 560 + 0 559 37894 165 54 53 90 7 39 59 0 11 142 chain 43295 chrX 156040895 + 103649511 103650163 L1MA2 4263 + 3465 4105 32577 37 1 0 82 4 1 77 1 0 42 1 6 80 13 10 156 21 19 83 7 0 47 chain 14680 chrX 156040895 + 103656176 103656367 MSTA 426 + 213 404 62696 36 3 1 68 0 2 84 chain 11204 chrX 156040895 + 103659514 103659660 MSTA 426 + 0 195 68241 96 0 49 50 chain 4112 chrX 156040895 + 103714862 103714953 MER20 218 + 54 143 90692 16 32 30 43 chain 3352 chrX 156040895 + 103772246 103772328 MER81 114 + 37 114 96574 35 13 15 13 9 2 12 chain 328323 chrX 156040895 + 103813553 103817576 L1PA7 6471 + 2440 6457 6248 201 26 9 1025 0 1 73 0 1 86 1 0 157 4 0 290 0 9 480 0 3 845 2 1 81 0 2 604 2 3 146 chain 4301 chrX 156040895 + 103842110 103842163 Charlie4z 170 + 117 170 89498 53 chain 222601 chrX 156040895 + 103851500 103854074 L1PA5 6144 + 2914 6142 8966 164 3 664 1337 8 8 270 1 0 453 0 1 195 8 1 135 chain 40864 chrX 156040895 + 103858513 103858975 LTR2 463 + 0 463 34050 80 0 1 382 chain 515508 chrX 156040895 + 103867706 103873391 L1PA3long 6157 + 439 6149 2493 41 8 22 65 0 4 84 0 1 26 0 3 1144 3 2 376 0 2 575 0 1 2220 0 1 1143 chain 25903 chrX 156040895 + 103874134 103874416 L1PA4 6152 + 5869 6151 47863 282 chain 3661 chrX 156040895 + 103911966 103912007 MER101 471 + 430 471 93910 41 chain 3408 chrX 156040895 + 103947135 103947173 L1ME3A 1206 + 977 1015 96004 38 chain 27397 chrX 156040895 + 103947872 103948183 L1PA7 6471 + 6143 6454 45710 311 chain 235262 chrX 156040895 + 103955472 103958908 L1PA13 3608 + 86 3483 8589 4 1 0 19 6 4 23 4 1 27 71 54 71 8 6 121 1 0 12 20 17 16 6 2 19 1 0 15 6 4 15 6 4 14 1 0 97 2 0 646 0 9 106 6 7 111 11 14 70 30 11 343 1 0 104 2 0 86 0 1 74 9 13 34 1 2 72 0 1 73 26 15 190 0 1 194 1 0 317 1 0 6 0 1 28 1 0 14 8 11 11 12 2 29 3 15 31 2 0 32 6 0 30 1 0 27 0 1 27 0 6 44 7 21 5 1 0 17 chain 216953 chrX 156040895 + 103989280 103991942 L1PA7 6471 + 3618 6470 9120 299 0 1 38 1 0 53 4 0 1033 0 14 24 0 1 195 24 199 146 1 0 79 0 2 752 1 4 12 chain 102352 chrX 156040895 + 104023213 104024388 L1PA5 6144 + 4970 6144 18026 324 1 0 850 chain 75867 chrX 156040895 + 104068634 104069627 L1PA8 5853 + 4864 5852 22622 13 0 1 128 6 9 76 2 0 86 0 1 338 1 0 45 2 1 40 8 6 71 1 0 22 1 0 42 1 0 17 1 0 92 chain 409621 chrX 156040895 + 104142970 104148460 L1PA3long 6157 + 871 6156 5027 41 5 24 22 23 0 30 15 15 38 268 260 366 5 8 111 22 22 243 0 1 136 0 1 173 229 12 186 0 1 11 0 4 468 11 13 126 1 0 88 0 2 420 0 2 199 0 2 461 0 4 687 0 3 1105 chain 32487 chrX 156040895 + 104148460 104148840 L1PA6 6164 + 5782 6162 39952 380 chain 21547 chrX 156040895 + 104227696 104228060 THE1B 368 + 0 356 54440 12 3 1 30 6 7 61 23 24 34 30 23 101 1 0 63 chain 5484 chrX 156040895 + 104253855 104253964 MER96B 391 - 55 160 83296 44 0 1 4 3 0 19 22 20 17 chain 4997 chrX 156040895 + 104308650 104308710 Tigger2a 444 + 208 268 85681 60 chain 13346 chrX 156040895 + 104376298 104376476 Tigger2 2703 + 2292 2480 64553 37 0 9 69 0 6 6 6 0 48 0 1 12 chain 45872 chrX 156040895 + 104416895 104417394 L1PA2 6032 + 5533 6032 31116 499 chain 153775 chrX 156040895 + 104455850 104457668 L1PA7 6471 + 4636 6461 12122 280 1 0 696 0 1 285 4 5 546 0 6 6 chain 30893 chrX 156040895 + 104460492 104460866 MER11A 1151 + 693 1151 41221 112 2 1 29 0 84 223 0 1 8 chain 6932 chrX 156040895 + 104463198 104463304 MER4A1_ 611 + 0 107 77845 22 9 8 69 0 2 6 chain 63806 chrX 156040895 + 104542202 104542951 L1PA7 6471 + 5722 6469 25451 736 2 0 11 chain 166398 chrX 156040895 + 104548954 104550777 L1PA3long 6157 + 4331 6153 11310 1677 1 0 145 chain 499609 chrX 156040895 + 104602037 104608348 L1PA7 6471 + 1 6430 3141 52 11 12 178 0 1 6 0 7 154 3 1 61 1 0 104 3 0 165 0 5 20 0 1 441 1 5 17 0 4 17 0 19 517 2 1 827 29 16 110 9 10 87 0 2 1157 1 0 207 0 1 279 1 2 138 0 13 25 0 8 173 0 61 44 1 0 506 1 3 81 1 0 4 0 1 21 5 6 45 1 4 160 3 7 199 10 10 301 1 2 131 chain 33013 chrX 156040895 + 104610108 104610479 L1P1 4361 + 3959 4328 39504 192 1 0 154 1 0 23 chain 116660 chrX 156040895 + 104657225 104658621 L1PA6 6164 + 4756 6161 16110 17 0 1 4 1 0 358 0 1 180 0 6 413 0 2 423 chain 3401 chrX 156040895 + 104678767 104678807 L1PA7 6471 + 6253 6293 96055 40 chain 13651 chrX 156040895 + 104678811 104678985 L1PA7 6471 + 6298 6469 64087 156 3 0 15 chain 12971 chrX 156040895 + 104711074 104711257 Tigger3c 601 + 339 526 65152 132 8 10 14 0 2 29 chain 8793 chrX 156040895 + 104805224 104805342 MER85 139 + 6 139 73004 84 1 12 7 0 4 26 chain 40225 chrX 156040895 + 104809527 104810424 L1PA3long 6157 + 5307 6157 34503 276 47 0 574 chain 19701 chrX 156040895 + 104864518 104864767 MLT2A2 560 + 1 249 56784 156 1 0 92 chain 36339 chrX 156040895 + 104864767 104865236 HERVL-int 5654 + 1867 2335 37183 113 1 0 65 0 6 106 12 6 172 chain 43952 chrX 156040895 + 104865460 104866006 MLT2A2 560 + 0 560 32160 310 1 0 96 0 11 15 0 3 54 0 1 70 chain 57368 chrX 156040895 + 104882458 104883143 LTR12_ 688 + 0 688 27137 94 0 2 46 1 2 23 1 0 340 4 5 176 chain 45987 chrX 156040895 + 104896506 104897129 LTR12_ 688 + 13 688 31068 57 39 0 15 1 91 333 10 9 28 0 2 140 chain 10144 chrX 156040895 + 104933159 104933276 L1PA6 6164 + 6045 6162 70120 117 chain 27078 chrX 156040895 + 104946118 104946409 AluYb8 318 + 28 318 46156 104 1 0 186 chain 65813 chrX 156040895 + 105026398 105027450 L1MA1 4479 + 3090 4136 24998 66 2 0 51 7 5 39 13 12 126 3 0 131 1 0 38 2 1 15 0 16 33 0 14 7 19 5 56 0 1 7 3 1 25 2 0 13 4 3 48 0 2 19 1 0 9 9 7 19 1 0 84 13 9 126 1 0 29 2 0 8 0 1 20 chain 155171 chrX 156040895 + 105041515 105043238 L1PA3long 6157 + 4434 6157 12048 968 4 4 751 chain 13161 chrX 156040895 + 105051802 105051978 L1PA8A 6298 + 6115 6291 64840 64 1 2 27 1 0 83 chain 15578 chrX 156040895 + 105100014 105100252 MER44A 345 + 79 314 61555 34 10 8 44 2 0 78 4 5 66 chain 26108 chrX 156040895 + 105117483 105117845 THE1C 375 + 12 375 47558 216 25 21 64 1 6 56 chain 53598 chrX 156040895 + 105143084 105143672 L1PA4 6152 + 5130 5718 28362 588 chain 18636 chrX 156040895 + 105151739 105152136 L1PB1 5432 + 5064 5420 57957 35 5 0 17 5 0 22 1 0 8 1 0 10 9 5 6 2 0 53 26 24 37 1 0 15 1 0 4 19 8 19 22 17 26 1 0 21 1 0 13 1 0 16 chain 24829 chrX 156040895 + 105158061 105158375 AluY 311 + 2 299 49543 45 16 0 101 0 1 51 2 0 99 chain 37183 chrX 156040895 + 105177059 105177552 MER1A 529 + 30 529 36622 98 1 0 204 0 2 119 17 20 41 0 2 13 chain 466780 chrX 156040895 + 105212294 105218105 L1PA8 5853 + 53 5847 3935 19 2 0 10 1 0 13 48 13 120 12 12 62 19 7 474 11 14 141 0 1 470 1 4 252 1 0 90 1 7 317 6 1 401 0 4 89 7 18 378 0 2 525 1 0 305 0 2 335 3 12 47 0 4 132 5 0 676 2 0 60 5 9 287 12 12 142 0 1 43 1 0 17 1 5 22 2 0 70 2 1 14 1 0 41 10 9 16 1 0 88 chain 42340 chrX 156040895 + 105248577 105249205 L1MA2 4263 + 3498 4112 33164 58 11 10 14 8 6 76 1 0 146 3 0 147 1 0 9 2 1 93 7 0 17 1 4 26 1 0 7 chain 23065 chrX 156040895 + 105264039 105264400 THE1C 375 + 0 375 52266 87 0 1 91 57 70 126 chain 28555 chrX 156040895 + 105271988 105272295 L1PA2 6032 + 5725 6032 44022 307 chain 37713 chrX 156040895 + 105273236 105273758 MER39B 650 + 0 542 36266 47 10 24 42 11 2 206 0 11 7 4 8 195 chain 134503 chrX 156040895 + 105279802 105281432 L1PA7 6471 + 4834 6466 13593 106 10 9 676 1 5 376 4 6 447 3 0 7 chain 116063 chrX 156040895 + 105332462 105334164 L1MA2 4263 + 2363 4054 16221 170 0 1 80 0 1 11 39 33 205 0 1 300 9 10 67 4 6 5 1 0 313 1 0 7 0 1 4 12 8 14 6 5 42 0 2 13 1 0 74 11 4 68 3 0 30 20 19 47 0 1 54 1 0 6 1 0 19 23 29 41 chain 87068 chrX 156040895 + 105350726 105351792 L1PA7 6471 + 5411 6468 20223 133 1 0 66 4 6 93 0 1 212 8 0 148 0 1 390 4 0 7 chain 119089 chrX 156040895 + 105381813 105383121 L1PA4 6152 + 4834 6143 15681 945 0 1 363 chain 76239 chrX 156040895 + 105391337 105392155 L1PA3long 6157 + 5339 6157 22502 818 chain 33306 chrX 156040895 + 105396887 105397347 MER1A 529 + 59 522 39253 382 39 42 39 chain 502003 chrX 156040895 + 105684062 105689985 L1PA6 6164 + 0 5922 3057 181 1 0 54 1 3 280 0 2 47 1 0 177 5 6 623 5 9 64 0 1 409 2 1 468 16 0 141 2 0 719 4 0 4 0 1 308 0 3 5 0 1 204 0 1 46 0 1 170 0 1 1164 4 5 214 3 7 48 0 1 553 chain 16264 chrX 156040895 + 105740127 105740310 L1P1 4361 + 3100 3282 60657 103 1 0 79 chain 9419 chrX 156040895 + 105789404 105789513 L1PA6 6164 + 5724 5833 71655 109 chain 28488 chrX 156040895 + 105789513 105789840 L1PA6 6164 + 5834 6161 44145 327 chain 512952 chrX 156040895 + 105796906 105802609 L1PA3long 6157 + 0 5842 2623 5 2 0 147 0 1 617 0 108 8 0 20 2230 0 1 43 1 0 557 0 1 184 2 1 1065 0 12 842 chain 28060 chrX 156040895 + 105830643 105830976 L1PA5 6144 + 5795 6131 44776 186 6 9 141 chain 5699 chrX 156040895 + 105860688 105860759 MADE1 96 + 0 96 82346 17 0 25 54 chain 80174 chrX 156040895 + 105920625 105921494 L1PA2 6032 + 5163 6032 21594 869 chain 27179 chrX 156040895 + 105947178 105947463 AluYa5 310 + 17 302 45998 285 chain 513669 chrX 156040895 + 105959686 105965561 L1PA4 6152 + 6 5976 2591 51 4 6 324 0 92 1192 1 0 649 1 0 456 15 0 281 0 1 49 1 0 76 1 0 345 0 12 147 1 0 194 1 0 754 1 0 418 0 2 249 0 4 172 0 4 492 chain 72153 chrX 156040895 + 105970610 105971610 L1PA11 4918 + 3570 4563 23496 95 0 1 642 0 12 6 1 0 67 2 1 11 6 4 65 2 0 34 4 0 9 8 3 10 13 9 15 1 0 9 chain 5561 chrX 156040895 + 105976112 105976209 MER20 218 + 21 118 82978 18 4 6 38 8 6 29 chain 43226 chrX 156040895 + 105977865 105978421 LTR19B 566 + 0 566 32628 183 0 8 41 5 0 35 0 4 13 1 2 208 0 5 15 3 0 52 chain 33209 chrX 156040895 + 105990409 105990856 MER4A1 472 + 4 472 39339 107 0 1 20 1 0 90 20 41 209 chain 39608 chrX 156040895 + 105992774 105993203 L1PA2 6032 + 5030 5459 34956 429 chain 74417 chrX 156040895 + 105996471 105997402 L1PA7 6471 + 5514 6470 22981 98 1 2 7 0 9 62 0 6 116 10 17 157 1 2 83 0 1 396 chain 238354 chrX 156040895 + 106000792 106003489 HERV17-int 4347 + 1653 4347 8510 1357 0 1 123 4 0 1213 chain 27822 chrX 156040895 + 106003804 106004122 LTR17 781 + 0 326 45154 51 0 8 267 chain 37884 chrX 156040895 + 106053991 106054463 MER4A1 472 + 0 472 36156 472 chain 228410 chrX 156040895 + 106084263 106086842 L1PA5 6144 + 3538 6132 8790 70 0 1 71 1 0 474 0 4 1776 0 11 187 chain 24227 chrX 156040895 + 106104987 106105343 THE1B 368 + 0 368 50446 39 1 16 25 1 2 57 0 4 23 8 6 24 9 3 169 chain 123514 chrX 156040895 + 106105343 106106915 THE1B-int 1605 + 0 1600 14934 326 0 1 102 2 27 71 1 0 129 4 3 16 0 1 4 0 2 816 0 1 101 chain 36304 chrX 156040895 + 106107867 106108329 LTR2 463 + 0 463 37212 197 2 4 179 0 1 30 1 0 28 1 0 24 chain 4530 chrX 156040895 + 106134457 106134505 L1PA3long 6157 + 4845 4893 88167 48 chain 115057 chrX 156040895 + 106134505 106135767 L1PA3long 6157 + 4894 6156 16382 1262 chain 19463 chrX 156040895 + 106144226 106144588 THE1B 368 + 0 368 57078 111 0 3 6 17 15 34 31 24 7 0 5 4 1 0 4 0 1 18 0 8 66 30 29 33 chain 4234 chrX 156040895 + 106145373 106145423 LTR25 836 + 496 546 89918 50 chain 155906 chrX 156040895 + 106152265 106154182 L1PA8 5853 + 3947 5853 12008 387 2 0 36 0 1 28 1 0 611 7 5 549 1 0 45 2 0 73 1 0 6 1 2 5 2 0 45 2 1 19 2 1 92 chain 52378 chrX 156040895 + 106220920 106221516 L1PA6 6164 + 5563 6160 28763 269 0 1 327 chain 58506 chrX 156040895 + 106234295 106235079 L1PB 1623 + 117 885 26814 52 4 1 18 8 10 6 5 0 65 1 0 134 1 0 10 7 0 72 2 1 83 0 1 4 1 0 311 chain 71352 chrX 156040895 + 106235084 106236089 MER11A 1151 + 0 1151 23681 63 1 100 126 8 5 94 0 1 51 11 12 81 0 1 3 0 1 21 1 0 114 6 9 8 1 0 55 0 4 50 5 4 15 7 41 49 0 9 167 9 8 59 chain 151438 chrX 156040895 + 106236095 106238204 L1PB1 5432 + 3314 5404 12258 252 0 1 160 4 5 154 1 2 74 0 1 29 0 1 634 4 9 22 1 2 136 8 0 9 2 10 177 6 7 103 1 0 11 2 1 20 1 0 13 1 0 9 6 2 11 2 0 51 19 17 44 3 2 13 1 0 5 18 7 19 3 1 4 1 0 14 3 1 17 0 1 5 1 0 22 1 0 12 chain 9738 chrX 156040895 + 106288579 106288719 THE1B 368 + 0 143 70962 15 2 0 15 7 12 101 chain 17163 chrX 156040895 + 106308343 106308553 THE1A 353 + 0 208 59615 110 1 0 92 1 0 6 chain 21695 chrX 156040895 + 106333068 106333429 THE1D 372 + 0 336 54232 73 0 10 52 6 10 45 0 3 9 11 9 82 40 0 43 chain 21641 chrX 156040895 + 106340283 106340530 L1PA7 6471 + 6212 6459 54300 247 chain 71122 chrX 156040895 + 106374172 106375171 L1PA13 3608 + 2496 3488 23737 445 11 16 175 1 0 27 2 1 38 0 2 34 1 0 5 9 10 24 2 0 60 2 1 27 2 1 29 1 0 5 2 0 47 10 6 19 1 0 20 chain 508604 chrX 156040895 + 106407045 106413162 L1PA6 6164 + 0 6161 2817 195 0 1 313 2 1 75 18 24 98 3 0 84 8 12 136 0 25 177 1 0 301 0 9 402 0 4 475 1 2 851 1 0 1177 1 5 89 0 1 192 1 0 29 1 0 100 1 0 534 4 0 6 0 4 504 1 0 10 1 0 325 chain 7368 chrX 156040895 + 106426575 106426659 HY3 101 + 8 92 76483 84 chain 54130 chrX 156040895 + 106445920 106446680 L1PA16 3655 + 2847 3598 28181 50 2 1 24 1 0 161 1 0 121 19 18 69 3 1 118 0 1 167 3 0 15 1 0 5 chain 567722 chrX 156040895 + 106469285 106475319 L1HS 6032 + 1 6032 23 740 0 1 1918 4 0 3372 chain 41655 chrX 156040895 + 106478968 106479441 L1PA5 6144 + 5655 6129 33589 154 1 2 318 chain 146748 chrX 156040895 + 106551069 106555836 L1MA2 4263 + 4 4110 12555 18 1 0 21 0 6 94 1 0 4 0 4 12 14 0 19 2004 0 34 1 0 61 1 0 43 5 13 14 8 0 135 1 0 124 432 1777 156 12 11 91 6 4 10 8 0 85 4 5 23 1 0 68 0 4 66 2 4 40 25 27 305 7 12 156 1 0 12 0 1 120 5 0 2 0 1 73 4 3 128 0 16 72 107 105 75 7 0 43 0 3 6 chain 40095 chrX 156040895 + 106551282 106551763 LTR17 781 + 268 781 34596 59 1 0 249 1 12 128 0 22 43 chain 91650 chrX 156040895 + 106570658 106571964 L1PREC2 3366 + 1682 2948 19382 141 0 9 639 15 7 4 1 0 234 0 1 35 2 0 27 19 7 20 1 0 44 1 0 4 3 0 13 36 21 11 3 1 6 3 0 17 2 0 25 chain 51498 chrX 156040895 + 106602715 106603270 L1PA3long 6157 + 5591 6146 29043 555 chain 4467 chrX 156040895 + 106627695 106627746 L1MA7 2200 + 1865 1916 88511 51 chain 4311 chrX 156040895 + 106639815 106639895 MADE1 96 + 0 96 89438 44 2 18 34 chain 40827 chrX 156040895 + 106654412 106654882 L1PA7 6471 + 5116 5589 34079 205 0 2 86 5 6 174 chain 3311 chrX 156040895 + 106663164 106663202 tRNA-Ile-ATT 40 + 0 38 96920 38 chain 47605 chrX 156040895 + 106743726 106744257 L1PA5 6144 + 5607 6141 30435 374 1 4 156 chain 185985 chrX 156040895 + 106755564 106757745 L1PA2 6032 + 3666 6030 10298 35 133 313 197 1 0 971 0 4 844 chain 43255 chrX 156040895 + 106760871 106761605 L1PA15 4387 + 3633 4327 32609 28 12 0 152 0 2 13 4 0 63 3 1 8 6 1 31 6 0 9 21 21 141 2 1 16 23 22 43 1 0 22 4 0 9 2 1 50 6 3 41 3 1 15 chain 48158 chrX 156040895 + 106815791 106816328 L1PA4 6152 + 3869 4410 30236 478 0 4 59 chain 282499 chrX 156040895 + 106827827 106830948 L1PA3long 6157 + 3030 6150 7359 1042 1 0 2078 chain 28669 chrX 156040895 + 106934689 106935007 L1PA2 6032 + 5710 6028 43846 50 0 1 251 1 0 16 chain 34967 chrX 156040895 + 106961488 106961928 LTR12F 595 + 0 584 38041 79 1 144 141 0 1 219 chain 467954 chrX 156040895 + 106966324 106972471 L1PA7 6471 + 11 6465 3911 167 2 3 20 11 10 29 134 331 150 5 15 57 35 110 143 0 21 52 0 3 15 8 6 154 4 0 220 1 2 329 5 6 633 1 2 106 0 8 7 8 0 22 15 0 240 3 0 195 0 3 13 15 22 408 54 53 691 1 2 4 1 0 6 0 1 127 1 6 204 0 2 65 0 2 98 0 3 836 1 0 97 1 0 400 0 1 202 0 1 151 chain 65166 chrX 156040895 + 107010778 107011493 L1PA5 6144 + 5412 6128 25140 376 0 1 339 chain 76887 chrX 156040895 + 107035505 107036321 L1HS 6032 + 5214 6030 22349 816 chain 27663 chrX 156040895 + 107037726 107038177 L1PA15 4387 + 3848 4289 45379 39 21 20 24 1 0 63 0 3 107 1 0 27 4 3 50 2 1 18 19 14 50 6 3 19 chain 175117 chrX 156040895 + 107104829 107106759 L1PA4 6152 + 3950 5881 10825 752 0 1 1178 chain 556329 chrX 156040895 + 107155767 107161785 L1PA2 6032 + 1 6027 344 1035 0 2 3542 0 1 1292 0 7 139 2 0 8 chain 53483 chrX 156040895 + 107198062 107198884 LTR12 884 + 32 884 28402 23 0 107 42 32 18 156 2 0 212 94 0 121 18 51 122 chain 2849 chrX 156040895 + 107198529 107198562 LTR12 884 + 693 726 82755 33 chain 2775 chrX 156040895 + 107198573 107198615 LTR12 884 + 635 677 82720 42 chain 7127 chrX 156040895 + 107202576 107202676 HY3 101 + 0 94 77171 25 6 0 69 chain 50564 chrX 156040895 + 107252347 107252948 MER4A1_ 611 + 0 602 29361 122 0 1 479 chain 12959 chrX 156040895 + 107254841 107254986 MER4A1 472 + 0 145 65168 145 chain 15453 chrX 156040895 + 107256060 107256537 L1MA8 2339 + 1913 2339 61721 18 4 0 23 1 0 55 1 0 90 3 1 19 233 190 30 chain 23570 chrX 156040895 + 107258078 107258334 L1PA3long 6157 + 5900 6157 51476 249 0 1 7 chain 14257 chrX 156040895 + 107278267 107278458 MSTA-int 1630 + 0 196 63254 14 6 7 23 0 1 61 0 3 87 chain 78066 chrX 156040895 + 107280943 107282152 L1MA3 4352 + 93 1300 22082 63 1 0 19 5 0 71 1 0 42 96 100 33 3 5 53 15 17 13 4 5 185 5 6 68 2 0 27 0 2 5 2 0 60 11 8 190 0 1 15 1 0 29 1 0 122 0 1 67 chain 4437 chrX 156040895 + 107291128 107291179 L1PA7 6471 + 5647 5698 88677 51 chain 66283 chrX 156040895 + 107291179 107291945 L1PA7 6471 + 5700 6464 24883 759 2 0 5 chain 5553 chrX 156040895 + 107295825 107296033 MER51A 677 + 297 416 83024 39 45 33 38 77 0 9 chain 26844 chrX 156040895 + 107332858 107333208 THE1B 368 + 0 368 46480 44 0 15 113 2 1 25 0 2 137 0 2 29 chain 552464 chrX 156040895 + 107364336 107370349 L1PA2 6032 + 1 6014 582 736 2 0 2367 0 4 2586 2 3 195 3 0 122 chain 432318 chrX 156040895 + 107422845 107427853 L1PA6 6164 + 1153 6153 4712 285 8 9 886 0 1 132 2 0 408 5 0 309 1 2 4 0 1 173 6 7 1430 16 16 499 1 0 93 6 0 423 0 1 321 chain 6519 chrX 156040895 + 107472474 107472595 L1P3b 214 + 1 107 79269 26 9 4 11 10 2 7 2 0 56 chain 3663 chrX 156040895 + 107719320 107719362 5S 121 + 0 42 93888 42 chain 6328 chrX 156040895 + 107802762 107802837 L1MB8 1703 + 1289 1364 79901 75 chain 3762 chrX 156040895 + 107804693 107804760 L1P4 1494 + 1340 1404 93123 10 4 3 37 2 0 14 chain 2940 chrX 156040895 + 107815216 107815250 MIR 256 + 183 217 100497 34 chain 114682 chrX 156040895 + 107881967 107883359 L1PA7 6471 + 5071 6466 16434 169 0 1 350 7 11 20 2 0 334 8 10 493 2 0 7 chain 111048 chrX 156040895 + 107967310 107968517 L1PA3long 6157 + 4379 5586 16930 1207 chain 44596 chrX 156040895 + 107997964 107998734 L1PB1 5432 + 4686 5424 31787 44 8 11 56 1 9 8 6 0 67 5 4 218 1 2 10 3 0 5 3 0 18 1 0 8 1 0 10 10 6 6 2 0 52 2 1 15 1 0 44 1 0 16 13 1 29 10 7 13 2 0 20 5 4 23 1 0 11 1 0 20 chain 376557 chrX 156040895 + 108011433 108015737 L1P1 4361 + 9 4321 5544 54 0 7 691 1 2 80 0 1 1070 0 1 392 1 0 491 0 1 1351 1 0 155 1 0 16 chain 21602 chrX 156040895 + 108038434 108038677 L1PA8 5853 + 5269 5512 54350 243 chain 32773 chrX 156040895 + 108222988 108223395 L1PA7 6471 + 6067 6469 39695 66 1 0 4 0 2 319 6 0 11 chain 21169 chrX 156040895 + 108260359 108260705 THE1B 368 + 0 368 54924 15 2 0 21 0 5 153 42 49 27 8 9 44 0 11 34 chain 50769 chrX 156040895 + 108273147 108273699 L1PA5 6144 + 5300 5852 29290 552 chain 557646 chrX 156040895 + 108277022 108283157 L1PA3long 6157 + 10 6157 265 143 0 12 5992 chain 21362 chrX 156040895 + 108284222 108284470 L1PA7 6471 + 6221 6470 54690 45 0 1 203 chain 49491 chrX 156040895 + 108318015 108318585 L1P1 4361 + 3774 4341 29768 377 1 0 154 1 0 23 2 1 12 chain 5315 chrX 156040895 + 108349023 108349089 MER63A 208 + 94 160 84119 66 chain 48903 chrX 156040895 + 108391215 108394436 L1PA7 6471 + 5710 6470 29978 94 2460 0 662 1 0 4 chain 118660 chrX 156040895 + 108503290 108505124 L1PB3 3668 + 1733 3562 15780 73 4 1 305 2 0 96 4 19 238 1 0 5 42 45 32 0 4 14 30 31 72 4 3 61 5 6 121 4 5 19 0 1 103 2 0 17 3 0 46 5 0 32 6 8 23 4 3 175 1 0 91 10 9 21 0 8 58 46 27 23 8 6 28 chain 101451 chrX 156040895 + 108506958 108508813 L1PREC2 3366 + 1478 2952 18135 7 0 6 275 30 0 22 5 8 169 2 3 20 3 0 20 314 0 385 3 4 36 7 0 6 0 7 274 1 0 7 0 1 19 35 6 46 9 8 43 1 0 4 64 52 11 0 1 4 8 5 25 chain 94225 chrX 156040895 + 108530345 108531365 L1PA3long 6157 + 5136 6153 19009 496 3 0 521 chain 73437 chrX 156040895 + 108550879 108552062 L1PA16 3655 + 2479 3592 23231 195 1 0 214 26 16 13 1 0 131 12 14 20 24 5 33 8 10 5 2 0 8 0 6 6 47 0 49 1 0 26 31 31 29 2 0 35 0 2 32 1 5 214 3 0 14 chain 3762 chrX 156040895 + 108619787 108619887 MER5C 305 + 11 121 93126 22 40 50 38 chain 139444 chrX 156040895 + 108631488 108633139 L1PA6 6164 + 2656 4312 13145 23 0 1 285 5 7 106 0 2 110 0 1 210 1 0 28 7 6 268 1 0 268 0 2 339 chain 394562 chrX 156040895 + 108642462 108650920 L1PB1 5432 + 25 5424 5241 27 1 2 49 7 8 295 23 0 201 0 1 105 0 46 126 0 1 509 1 0 6 3 0 4 13 0 196 0 5 416 9 10 70 11 13 49 0 10 21 353 5 298 6 4 71 0 4 165 2685 0 100 1 0 144 3 19 237 9 7 474 26 15 34 2 0 298 2 1 383 0 1 171 16 0 82 2 0 287 4 2 85 27 26 6 3 0 19 1 0 13 1 0 10 6 2 10 2 0 52 19 17 44 2 1 13 3 0 15 9 0 13 12 9 14 2 0 24 1 0 21 1 0 12 2 1 16 1 0 4 chain 10125 chrX 156040895 + 108650999 108651134 L1MB8 1703 + 1431 1565 70156 83 1 0 51 chain 12145 chrX 156040895 + 108662177 108662314 L1PA4 6152 + 5780 5918 66581 120 0 1 17 chain 107372 chrX 156040895 + 108683940 108685227 L1PA7 6471 + 3133 4433 17400 351 1 2 66 0 8 27 1 4 801 0 1 40 chain 6257 chrX 156040895 + 108748739 108748862 MER44B 551 + 390 511 80148 69 32 30 22 chain 451593 chrX 156040895 + 108800831 108806505 L1PA6 6164 + 0 6156 4346 503 24 28 36 1 0 215 4 22 10 17 0 1260 1 0 144 3 5 109 6 8 61 0 3 110 0 1 192 9 10 460 2 1 10 0 2 48 0 4 7 1 5 52 12 1 96 0 1 73 11 14 211 0 1 98 1 4 557 0 4 14 0 453 58 7 8 387 0 4 25 0 2 81 0 1 93 0 1 339 2 0 7 1 0 163 6 7 147 chain 40670 chrX 156040895 + 108845567 108846048 L1PA7 6471 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chain 2034 chrX 156040895 + 108971303 108971326 L1PB1 5432 + 5124 5147 106133 23 chain 14262 chrX 156040895 + 108971343 108971630 L1PB1 5432 + 5159 5424 63250 10 3 1 50 2 1 16 1 0 42 5 4 13 1 0 4 19 8 18 9 6 14 2 0 24 1 0 22 0 3 9 1 0 16 1 0 4 chain 52147 chrX 156040895 + 108972886 108973492 THE1A-int 1579 + 972 1579 28830 561 0 1 45 chain 23458 chrX 156040895 + 108973492 108973802 THE1A 353 + 0 306 51655 12 6 4 94 1 0 92 1 0 104 chain 20245 chrX 156040895 + 108974390 108974669 L1MA3 4352 + 680 962 56085 93 2 0 104 6 11 74 chain 68368 chrX 156040895 + 108992765 108993645 L1P3 4156 + 2848 3728 24367 38 0 4 322 0 1 255 0 2 24 7 0 25 5 1 26 0 4 178 chain 120153 chrX 156040895 + 109005369 109006925 L1PA7 6471 + 4916 6469 15513 39 1 0 31 14 16 416 1 2 94 16 17 90 1 0 89 2 0 130 0 1 383 0 5 92 1 2 127 16 6 13 chain 503047 chrX 156040895 + 109010403 109016563 L1PA5 6144 + 14 5871 3030 423 1 2 541 4 1 830 0 1 381 0 2 543 0 1 522 0 3 245 6 0 6 3 9 149 1 0 59 0 1 37 0 2 91 0 2 1110 1 0 198 311 0 698 chain 27013 chrX 156040895 + 109015566 109015864 AluYd8 298 + 0 298 46252 298 chain 113213 chrX 156040895 + 109034917 109036156 L1PA3long 6157 + 4906 6149 16647 488 0 5 608 2 1 141 chain 384546 chrX 156040895 + 109054605 109058794 L1PA2 6032 + 1844 6032 5406 588 1 0 3600 chain 551667 chrX 156040895 + 109113307 109119333 L1PA2 6032 + 1 6032 627 3385 0 1 842 0 4 1799 chain 91619 chrX 156040895 + 109138527 109139668 L1PA7 6471 + 5299 6467 19390 245 1 0 4 0 1 161 1 0 56 0 26 52 0 1 191 21 22 409 chain 65576 chrX 156040895 + 109148150 109152009 L1PB1 5432 + 4192 5422 25058 77 0 1 335 0 4 17 2 0 81 1 0 51 0 13 36 1 9 112 3 6 36 2739 133 11 23 0 26 1 0 6 1 0 10 2 0 3 2 0 9 6 4 48 2 1 15 1 0 44 1 0 16 70 58 16 1 0 22 1 0 12 1 0 18 chain 11464 chrX 156040895 + 109176163 109176299 L1PA2 6032 + 3251 3387 67805 136 chain 114191 chrX 156040895 + 109176299 109177547 L1PA2 6032 + 3388 4636 16523 1248 chain 4813 chrX 156040895 + 109178689 109178779 LTR7A 91 + 0 85 86632 14 2 0 7 5 3 51 2 1 9 chain 285806 chrX 156040895 + 109178794 109182456 HERVH-int 3825 + 0 3825 7262 56 0 3 153 0 11 307 1 0 11 1 0 4 0 1 26 1 0 8 1 0 9 4 0 14 30 1 14 1 0 13 3 0 14 9 7 4 1 0 20 24 21 23 20 0 9 1 0 50 0 1 4 2 0 453 6 7 186 10 0 205 0 1 109 0 2 26 2 6 227 0 4 368 39 40 652 9 11 39 8 218 260 0 2 225 chain 511510 chrX 156040895 + 109191710 109198118 L1PA7 6471 + 0 6463 2686 407 1 0 207 1 2 55 0 1 217 0 1 4 1 0 91 16 10 253 0 1 294 4 0 216 1 0 730 1 0 150 0 2 551 0 3 173 1 0 116 4 2 164 0 1 121 0 1 5 1 0 252 0 36 355 0 1 210 0 1 43 0 4 234 0 1 298 0 7 54 2 1 55 0 1 283 0 3 61 3 9 444 0 3 329 chain 164780 chrX 156040895 + 109224105 109226289 L1PA8 5853 + 3622 5813 11429 76 1 0 205 0 2 435 1 0 155 14 13 4 0 1 269 0 8 209 3 0 69 1 8 202 0 1 149 13 14 122 1 0 44 2 0 70 29 27 35 2 1 19 2 1 52 chain 429913 chrX 156040895 + 109228792 109234080 L1PA6 6164 + 0 6162 4747 145 50 51 41 1 3 88 34 35 148 6 8 48 1 0 119 0 1 1647 2 0 828 1 0 4 0 1 10 13 15 203 0 1 298 1 0 8 10 11 645 0 4 73 0 861 855 0 2 9 chain 46408 chrX 156040895 + 109293314 109293838 L1PA5 6144 + 5616 6142 30881 388 0 2 136 chain 26518 chrX 156040895 + 109326785 109327140 L1PBa 3878 + 1719 2072 46949 97 1 0 5 1 2 70 3 1 178 chain 15477 chrX 156040895 + 109353721 109353924 Tigger1 2417 + 2208 2408 61689 45 2 0 84 1 0 71 chain 132123 chrX 156040895 + 109406981 109408527 THE1A-int 1579 + 17 1579 13820 199 0 1 839 0 15 508 chain 26395 chrX 156040895 + 109408527 109408880 THE1A 353 + 0 353 47128 84 0 1 16 20 19 233 chain 39198 chrX 156040895 + 109425065 109425799 L1PB1 5432 + 4836 5427 35217 106 11 7 153 104 1 11 1 0 20 1 0 13 1 0 9 2 0 3 2 0 9 6 4 48 2 1 16 1 0 44 2 1 14 1 0 4 2 0 13 9 0 14 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 14 4 0 9 chain 82128 chrX 156040895 + 109436033 109436935 L1PA3long 6157 + 5245 6147 21217 902 chain 193028 chrX 156040895 + 109445611 109447776 L1PA5 6144 + 3969 6135 9972 1569 0 1 596 chain 6182 chrX 156040895 + 109482944 109483011 L1PA3long 6157 + 5845 5912 80417 67 chain 31221 chrX 156040895 + 109497997 109498409 MLT2A1 477 + 0 413 40953 169 4 1 11 0 1 20 1 2 178 0 2 29 chain 31204 chrX 156040895 + 109512921 109513470 L1PB1 5432 + 4922 5427 40970 114 2 3 64 7 0 11 5 0 24 8 6 12 11 7 5 2 0 52 2 1 15 1 0 45 1 0 15 23 12 19 2 0 4 1 0 15 2 0 24 1 0 21 4 3 10 1 0 18 3 0 5 chain 71538 chrX 156040895 + 109517155 109518699 L1MA1 4479 + 2999 4190 23648 26 0 1 132 2 0 17 4 0 76 1 0 12 4 0 41 13 8 76 2 0 11 0 6 11 321 0 80 1 0 7 13 0 4 21 0 11 2 0 107 0 48 42 7 6 34 1 0 71 1 0 7 21 20 6 1 0 74 2 0 4 8 0 9 1 0 6 3 0 38 0 1 39 5 4 41 4 3 29 2 0 29 7 6 9 1 0 11 3 1 9 6 0 18 chain 477303 chrX 156040895 + 109520475 109525743 L1PA3long 6157 + 869 6144 3693 861 0 1 594 0 1 2979 1 2 707 1 5 125 chain 172528 chrX 156040895 + 109545066 109547179 L1PA6 6164 + 2896 6161 10972 283 7 0 6 4 0 4 0 1 84 20 1188 217 1 0 236 1 9 340 24 0 51 4 8 40 1 6 336 0 2 454 chain 39697 chrX 156040895 + 109550903 109551459 MER41A 554 + 0 554 34894 212 9 6 138 12 14 61 1 0 49 0 1 4 5 4 65 chain 165488 chrX 156040895 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23 22 24 13 10 4 124 chain 541491 chrX 156040895 + 109644668 109650688 L1PA3long 6157 + 0 6156 1239 151 1 2 95 0 9 524 0 128 518 0 1 898 1 0 3683 1 0 143 1 0 4 chain 19520 chrX 156040895 + 109653175 109653388 L1PA3long 6157 + 5368 5581 56994 213 chain 52948 chrX 156040895 + 109653389 109653961 L1PA3long 6157 + 5581 6153 28593 572 chain 11105 chrX 156040895 + 109659662 109659878 L1MB2 1706 + 368 590 68399 34 55 60 71 1 2 55 chain 129478 chrX 156040895 + 109670624 109672092 SVA_B 1603 + 0 1603 14096 20 1 21 744 0 79 107 5 41 591 chain 29220 chrX 156040895 + 109687385 109687737 L1PA7 6471 + 6119 6469 43018 339 2 0 11 chain 7105 chrX 156040895 + 109708697 109708899 Tigger4a 237 + 11 112 77250 90 101 0 11 chain 14598 chrX 156040895 + 109717768 109717957 MER30B 195 + 0 187 62800 83 2 0 104 chain 23929 chrX 156040895 + 109719704 109720001 AluSp 311 + 1 290 50899 76 8 0 213 chain 23646 chrX 156040895 + 109762645 109762926 L1PA7 6471 + 6187 6466 51364 272 2 0 7 chain 4595 chrX 156040895 + 109800646 109800704 L1MDa 1598 + 496 556 87816 47 0 2 11 chain 11563 chrX 156040895 + 109812616 109812775 L1PA8 5853 + 5696 5853 67638 44 2 1 19 2 1 92 chain 37060 chrX 156040895 + 109823571 109824068 MER75 514 + 0 514 36701 17 5 21 260 14 15 201 chain 32936 chrX 156040895 + 109829042 109829502 LTR7B 505 + 0 503 39560 105 0 10 69 6 13 28 3 27 26 0 2 42 0 1 42 1 0 23 0 1 52 14 13 49 chain 119475 chrX 156040895 + 109833518 109834826 L1P1 4361 + 2620 3928 15615 1308 chain 5577 chrX 156040895 + 109851825 109851918 MER63A 208 + 81 208 82906 44 19 53 30 chain 16925 chrX 156040895 + 109856530 109856821 L1PA16 3655 + 3358 3619 59881 146 3 2 6 0 1 65 57 27 14 chain 124098 chrX 156040895 + 109912598 109913984 L1PA5 6144 + 4751 6139 14828 543 0 1 87 0 1 756 chain 30954 chrX 156040895 + 109999594 110000000 MER4D 903 + 126 535 41166 8 2 0 6 0 3 325 1 2 4 0 1 60 chain 55848 chrX 156040895 + 110034628 110035230 L1PA3long 6157 + 5555 6157 27611 602 chain 2670 chrX 156040895 + 110055339 110055430 MER91C 135 + 30 120 102605 13 14 11 12 25 27 27 chain 12262 chrX 156040895 + 110059671 110059846 MER30 238 + 47 238 66347 60 18 34 97 chain 15974 chrX 156040895 + 110079808 110079990 L1PA3long 6157 + 5975 6157 61058 182 chain 47553 chrX 156040895 + 110122048 110122568 L1PA3long 6157 + 5620 6144 30460 482 0 4 38 chain 10812 chrX 156040895 + 110153722 110153884 MER30 238 + 49 238 68831 47 12 33 24 2 8 77 chain 76744 chrX 156040895 + 110221748 110222602 L1PA2 6032 + 5169 6030 22385 6 1 0 4 0 1 78 0 2 752 1 6 12 chain 519901 chrX 156040895 + 110229538 110235969 L1PA6 6164 + 2 6162 2280 235 0 2 23 1 0 256 0 2 47 1 0 891 6 9 307 0 14 537 0 1 761 314 0 98 4 0 81 0 4 426 0 1 207 0 2 170 0 1 104 0 1 461 1 0 627 4 0 46 14 18 349 0 18 369 0 1 91 chain 225496 chrX 156040895 + 110238414 110241522 L1P2 5180 + 446 3432 8872 60 11 1 8 1 0 46 57 0 4 19 0 13 15 16 144 21 0 49 0 15 224 18 19 4 1 0 73 6 8 237 0 1 137 9 5 329 12 8 429 0 1 50 19 0 58 5 1 186 1 5 349 7 3 254 3 0 249 chain 16707 chrX 156040895 + 110241522 110241712 L1PA7 6471 + 6172 6362 60036 190 chain 23091 chrX 156040895 + 110277287 110277580 L1PA5 6144 + 5856 6142 52223 13 0 1 100 6 2 163 4 0 7 chain 3256 chrX 156040895 + 110294821 110294860 MADE1 96 + 57 96 97418 39 chain 7915 chrX 156040895 + 110313972 110314084 MER5A 189 + 33 146 75083 41 5 6 66 chain 56424 chrX 156040895 + 110333296 110333979 L1PA7 6471 + 5775 6468 27447 196 0 1 11 0 7 285 15 12 165 0 5 11 chain 238631 chrX 156040895 + 110342856 110345502 L1PA5 6144 + 3495 6141 8502 2646 chain 113067 chrX 156040895 + 110481592 110483603 L1PA7 6471 + 5063 6467 16667 404 0 3 145 1 3 80 0 2 98 617 0 401 0 2 118 4 5 143 chain 436494 chrX 156040895 + 110546668 110551628 L1PA4 6152 + 0 5973 4638 163 2 742 170 5 17 84 0 1 1429 0 257 665 0 3 2442 chain 7278 chrX 156040895 + 110563995 110564125 L1PA15 4387 + 4132 4256 76739 53 1 0 4 20 16 11 2 1 39 chain 87415 chrX 156040895 + 110581861 110582958 MER11A 1151 + 0 1147 20154 77 0 8 145 1 0 64 0 11 69 2 1 467 0 1 7 0 23 13 0 9 90 12 13 84 6 5 60 chain 47205 chrX 156040895 + 110604323 110605815 L1PA7 6471 + 2158 3609 6324 318 9 10 155 33 9 44 24 1 202 1 2 201 0 4 102 0 3 10 0 1 4 4 2 151 0 1 106 3 2 43 2 0 80 chain 539653 chrX 156040895 + 110605834 110611851 L1PA3long 6157 + 4 6157 1359 148 0 1 589 1 0 37 1 129 169 0 1 3282 0 4 277 1 0 669 0 4 843 chain 85867 chrX 156040895 + 110611864 110614578 L1PA7 6471 + 3609 6332 6324 173 0 1 45 5 0 156 0 1 23 0 1 666 1 5 87 0 1 360 0 1 492 0 3 161 8 10 537 chain 526311 chrX 156040895 + 110626015 110632464 L1PA7 6471 + 3 6469 1986 400 5 0 816 1 2 274 0 3 57 1 0 115 0 1 465 0 1 4 1 0 148 0 1 349 6 7 216 0 1 7 0 1 292 2 5 335 2 0 16 5 4 30 1 2 16 1 5 298 0 1 171 1 2 45 0 1 297 5 4 494 0 5 727 5 8 10 8 7 823 chain 51317 chrX 156040895 + 110637906 110638493 L1PA5 6144 + 5559 6144 29116 253 0 1 326 3 0 5 chain 92729 chrX 156040895 + 110653998 110655141 L1PA10 4194 + 3006 4148 19230 471 1 4 595 1 0 40 3 0 32 chain 507491 chrX 156040895 + 110656903 110663041 L1PA6 6164 + 0 6158 2871 246 1 2 103 3 6 92 8 0 120 1 0 225 1 18 148 0 1 281 1 2 11 0 1 583 0 1 490 2 5 835 1 0 19 0 1 332 6 7 1875 3 2 425 0 1 144 1 2 4 1 0 176 chain 26360 chrX 156040895 + 110707270 110707578 L1PA7 6471 + 4938 5245 47179 268 1 0 39 chain 75965 chrX 156040895 + 110707579 110708473 L1PA7 6471 + 5245 6144 22587 583 0 3 210 0 1 94 0 1 7 chain 8348 chrX 156040895 + 110737888 110738032 MER20 218 + 30 178 74031 46 17 20 57 11 12 13 chain 22531 chrX 156040895 + 110738477 110738754 AluY 311 + 17 297 53068 115 0 1 144 1 3 17 chain 5699 chrX 156040895 + 110740855 110741012 MER58A 224 + 47 209 82351 54 73 78 30 chain 77409 chrX 156040895 + 110764326 110765363 MER11A 1151 + 0 1133 22220 55 0 99 140 4 0 94 0 1 39 15 16 85 5 18 137 0 1 150 41 24 58 0 1 53 0 1 161 chain 92585 chrX 156040895 + 110766400 110767591 L1PB 1623 + 102 1290 19261 10 1 0 5 1 0 71 37 40 41 2 1 128 2 1 19 1 0 69 1 0 803 chain 17327 chrX 156040895 + 110812716 110812931 MSTB2 466 + 27 242 59427 215 chain 26824 chrX 156040895 + 110857277 110857644 THE1B 368 + 0 368 46508 15 2 0 25 0 5 127 4 5 23 12 9 159 chain 11831 chrX 156040895 + 110890083 110890230 L1PA7 6471 + 4670 4818 67146 80 0 1 67 chain 65848 chrX 156040895 + 110890230 110891032 L1PA7 6471 + 4819 5621 24988 128 2 0 6 5 7 661 chain 68166 chrX 156040895 + 110891032 110891877 L1PA7 6471 + 5624 6467 24415 345 5 6 70 4 6 410 5 0 6 chain 231274 chrX 156040895 + 110909513 110912328 L1PA7 6471 + 3647 6468 8715 834 5 7 186 0 4 70 1 0 238 7 6 130 0 1 484 8 7 86 0 2 83 3 4 525 6 5 149 chain 17180 chrX 156040895 + 110930861 110931183 L1PA15 4387 + 4047 4356 59596 57 2 1 26 1 0 54 1 0 20 0 2 5 19 20 33 22 17 34 4 1 12 5 0 27 chain 25997 chrX 156040895 + 110970409 110970762 L1PA8 5853 + 5506 5853 47719 56 1 0 47 2 0 70 1 0 61 2 1 19 4 3 90 chain 414001 chrX 156040895 + 110972239 110977115 L1PA6 6164 + 634 6162 4974 69 0 1 17 7 26 46 0 18 219 0 1 1207 0 1 94 0 1 346 0 603 68 1 4 722 0 1 27 3 4 1081 1 2 251 0 1 387 0 1 330 chain 3731 chrX 156040895 + 111081512 111081564 Tigger1 2417 + 1713 1764 93395 37 2 1 13 chain 23051 chrX 156040895 + 111167617 111167879 L1PA7 6471 + 6203 6465 52292 262 chain 7956 chrX 156040895 + 111175241 111175387 MER33 330 + 28 175 74988 43 31 32 72 chain 81536 chrX 156040895 + 111185846 111186809 L1PA7 6471 + 4010 4985 21330 198 0 3 458 0 8 277 0 1 30 chain 86384 chrX 156040895 + 111315171 111316092 L1HS 6032 + 5111 6032 20343 921 chain 57573 chrX 156040895 + 111316120 111317327 L1PREC2 3366 + 2085 2951 27086 104 321 0 99 7 11 29 5 4 415 0 6 6 19 10 37 1 0 43 1 0 5 3 0 13 29 21 16 7 2 15 0 7 6 8 0 3 1 0 14 chain 414530 chrX 156040895 + 111340134 111345712 L1PA8A 6298 + 422 5649 4969 10 1 0 4 1 0 48 7 8 21 1 0 370 5 4 118 1 2 133 1 0 126 0 3 5 0 9 5 0 3 71 1 0 1006 0 1 132 9 0 69 1 0 59 47 17 701 25 21 22 1 0 8 7 5 20 0 4 6 5 1 8 0 1 37 0 1 219 12 0 242 304 0 21 1 0 37 0 1 108 0 1 479 3 1 235 3 2 57 0 1 225 1 0 366 1 0 13 2 1 42 0 2 115 chain 5133 chrX 156040895 + 111376871 111376928 MER53 195 + 0 57 85002 57 chain 3681 chrX 156040895 + 111427529 111427573 MER72 723 + 679 723 93731 44 chain 28111 chrX 156040895 + 111430350 111430727 THE1C 375 + 2 375 44695 12 2 0 95 10 8 147 0 1 85 1 0 25 chain 68577 chrX 156040895 + 111464385 111465154 L1PA4 6152 + 5384 6152 24315 759 1 0 9 chain 35837 chrX 156040895 + 111477406 111477869 L1PA8 5853 + 5394 5853 37506 127 0 2 41 1 0 44 2 0 69 15 14 49 2 1 19 1 0 93 chain 40170 chrX 156040895 + 111543806 111544258 LTR7 482 + 0 482 34540 220 1 0 10 0 31 221 chain 297789 chrX 156040895 + 111544260 111547962 HERVH-int 3825 + 0 3825 6894 212 0 11 309 5 0 32 18 16 9 4 0 14 7 1 15 0 17 21 24 0 39 23 1 28 68 5 39 5 6 4 1 0 444 15 0 462 4 31 359 1 0 1045 8 218 101 3 0 6 1 4 376 chain 2292 chrX 156040895 + 111545020 111545045 HERVH-int 3825 + 605 630 99551 25 chain 38974 chrX 156040895 + 111549221 111549673 LTR7 482 + 0 482 35373 225 1 0 21 1 32 204 chain 3659 chrX 156040895 + 111553511 111553556 MER110A 451 + 250 295 93925 45 chain 60650 chrX 156040895 + 111553617 111554323 L1PA7 6471 + 5780 6470 26190 356 0 1 324 17 0 9 chain 11440 chrX 156040895 + 111572376 111572533 LTR49-int 1717 + 163 318 67851 16 1 0 60 1 0 79 chain 12249 chrX 156040895 + 111575645 111575776 L1PA3long 6157 + 2946 3077 66372 131 chain 140261 chrX 156040895 + 111639581 111641094 L1PA2 6032 + 4519 6032 13081 1513 chain 32570 chrX 156040895 + 111665612 111666014 MLT2A1 477 + 0 403 39896 142 0 1 24 3 7 46 4 0 183 chain 257146 chrX 156040895 + 111753236 111756418 L1PA7 6471 + 3243 6467 8056 227 0 6 29 0 2 19 2 0 91 0 21 271 0 1 576 12 8 117 16 8 55 0 12 132 1 5 300 10 1 321 6 1 61 0 3 92 0 4 11 1 4 78 8 16 272 1 4 191 0 3 264 0 3 10 3 0 5 chain 3537 chrX 156040895 + 111778104 111778145 L1PA7 6471 + 6267 6308 94961 41 chain 13589 chrX 156040895 + 111778152 111778302 L1PA7 6471 + 6316 6466 64181 150 chain 517934 chrX 156040895 + 111784452 111790561 L1PA6 6164 + 0 6157 2371 227 13 15 190 0 3 82 0 2 177 0 28 1421 0 1 414 0 1 21 0 4 14 13 18 567 6 0 5 0 2 5 2 1 2116 1 5 15 0 1 20 0 2 800 chain 49892 chrX 156040895 + 111791836 111792465 L1PA8 5853 + 5222 5847 29604 44 1 2 296 1 0 41 5 3 71 1 0 8 1 2 51 2 1 19 1 0 87 chain 7390 chrX 156040895 + 111797533 111797654 Charlie4a 502 + 255 371 76419 6 0 1 80 3 1 6 2 0 15 2 0 7 chain 29138 chrX 156040895 + 111828581 111829021 THE1D-int 1627 + 12 495 43140 101 0 1 15 54 0 84 0 16 57 1 0 103 3 84 22 chain 23890 chrX 156040895 + 111839896 111840169 AluY 311 + 8 282 50957 124 0 1 149 chain 41065 chrX 156040895 + 111872690 111873338 L1PA16 3655 + 2926 3578 33925 59 3 0 113 31 33 73 6 5 71 31 29 93 0 3 8 10 13 34 4 6 112 chain 28311 chrX 156040895 + 111919105 111919522 LTR12F 595 + 0 580 44396 100 0 12 34 15 103 38 7 71 91 4 3 128 chain 87640 chrX 156040895 + 111949075 111950631 L1PB1 5432 + 4204 5404 20112 341 2 1 57 3 0 13 11 8 188 1 0 291 3 2 11 13 0 22 1 0 7 322 14 10 3 1 50 2 1 15 1 0 44 1 0 16 2 0 5 18 7 19 8 5 14 2 0 26 1 0 19 1 0 13 chain 28789 chrX 156040895 + 111962450 111962838 Tigger1 2417 + 1697 2088 43649 13 7 8 59 0 3 90 1 0 218 chain 538349 chrX 156040895 + 111962838 111968972 L1PA4 6152 + 0 6138 1437 130 14 0 12 12 26 135 0 1 276 1 0 1795 0 1 706 5 1 1009 0 1 536 1 0 23 3 4 52 9 16 581 2 1 832 chain 22296 chrX 156040895 + 112009755 112010003 L1PA5 6144 + 5893 6141 53414 248 chain 36218 chrX 156040895 + 112032969 112033376 L1PA5 6144 + 5733 6141 37258 77 0 1 330 chain 20317 chrX 156040895 + 112102648 112103079 L1PA11 4918 + 4231 4629 55993 80 1 5 9 1 0 64 8 7 11 2 0 68 3 1 12 1 0 14 52 39 13 1 0 13 2 0 11 31 21 7 2 0 4 2 0 19 chain 13862 chrX 156040895 + 112122091 112122526 L1MA2 4263 + 3918 4218 63778 40 1 0 4 1 0 96 7 0 16 1 2 29 1 0 9 198 74 16 4 2 12 chain 76884 chrX 156040895 + 112123758 112124777 L1PA8A 6298 + 5251 6280 22350 105 0 1 138 6 9 47 0 15 13 0 1 69 4 0 14 0 1 295 2 1 76 3 0 132 0 1 5 3 0 10 9 7 13 0 1 75 chain 3312 chrX 156040895 + 112144567 112144716 MER5B 177 - 7 156 96903 31 97 97 21 chain 38454 chrX 156040895 + 112168385 112169461 MER41B 635 + 2 611 35753 89 6 5 26 4 44 274 32 31 79 521 16 45 chain 62056 chrX 156040895 + 112175632 112176321 L1PA3long 6157 + 3897 4592 25860 190 0 1 324 0 5 175 chain 230224 chrX 156040895 + 112180882 112183698 L1P3 4156 + 0 2839 8741 251 1 0 64 10 9 289 1 0 4 0 1 87 5 0 6 7 12 927 4 23 76 2 1 143 0 3 203 0 2 453 7 9 276 chain 10222 chrX 156040895 + 112183707 112183819 L1PA7 6471 + 6353 6465 69964 112 chain 28715 chrX 156040895 + 112184036 112184359 L1PA5 6144 + 5818 6141 43767 323 chain 178287 chrX 156040895 + 112261165 112263214 L1PA5 6144 + 4105 6144 10666 1783 1 2 10 19 9 79 1 0 156 chain 30035 chrX 156040895 + 112303440 112303767 L1PA3long 6157 + 5830 6157 42019 327 chain 540464 chrX 156040895 + 112326146 112332160 L1PA3long 6157 + 4 6149 1310 79 0 1 64 4 5 158 1 0 66 2 1 398 0 128 1422 1 0 2028 0 4 1791 chain 8650 chrX 156040895 + 112351131 112353023 L1PA4 6152 + 3454 5331 73349 1136 14 0 711 1 0 30 chain 4130 chrX 156040895 + 112409367 112409411 L1MA3 4352 + 44 88 90575 44 chain 459286 chrX 156040895 + 112461813 112467972 L1PA7 6471 + 5 6470 4147 196 11 10 29 62 63 18 140 337 46 4 5 12 5 15 57 1 76 156 23 44 84 5 7 169 34 17 309 2 0 5 4 6 20 0 3 5 3 0 7 1 0 214 0 1 246 0 1 476 5 6 18 0 1 484 0 2 582 0 1 102 5 6 168 2 0 89 0 1 268 1 2 279 0 1 22 0 4 310 1 0 334 1 3 298 8 7 55 16 17 63 1 0 260 9 14 271 0 1 110 0 9 8 9 0 31 1 0 4 chain 18051 chrX 156040895 + 112490236 112490496 L1PB 1623 + 117 370 58610 52 4 1 18 7 4 77 5 4 97 chain 539892 chrX 156040895 + 112502043 112508061 L1PA3long 6157 + 4 6156 1346 148 0 1 54 0 1 6 2 1 565 1 129 43 0 4 490 1 0 1079 0 1 2540 0 1 1089 chain 6998 chrX 156040895 + 112529386 112529590 MER53 195 + 2 189 77603 30 79 81 13 19 0 63 chain 37894 chrX 156040895 + 112530379 112530831 LTR7 482 + 0 482 36145 143 1 0 84 21 0 9 0 52 194 chain 298781 chrX 156040895 + 112530854 112534651 HERVH-int 3825 + 0 3825 6868 212 0 11 46 1 0 217 125 0 48 5 0 36 2 1 9 1 0 9 4 0 14 7 1 15 1 0 12 87 0 67 0 20 11 2 1 49 1 0 231 1 0 213 15 0 462 4 31 290 0 4 326 1 3 115 1 0 666 7 217 250 0 4 234 chain 3730 chrX 156040895 + 112531389 112531442 HERVH-int 3825 + 540 592 93405 30 1 0 10 1 0 7 0 1 4 chain 5076 chrX 156040895 + 112531621 112531696 HERVH-int 3825 + 631 725 85271 26 1 0 11 0 21 8 1 0 28 chain 40408 chrX 156040895 + 112535905 112536357 LTR7 482 + 0 482 34377 228 1 0 36 0 31 187 chain 277435 chrX 156040895 + 112556183 112560107 L1PA10 4194 + 255 4151 7506 15 6 4 12 1 0 8 58 32 9 2 0 21 8 6 8 1 0 10 1 0 15 11 4 4 1 0 41 48 46 370 0 8 12 1 0 238 4 5 290 12 9 201 0 6 527 1 0 264 7 8 30 0 1 13 1 2 4 1 0 141 5 7 22 5 2 64 0 2 63 0 4 330 26 32 188 35 38 272 0 4 73 0 3 317 11 12 30 3 0 30 9 4 25 9 0 10 chain 117568 chrX 156040895 + 112573997 112575548 THE1A-int 1579 + 0 1574 15963 169 2 1 5 0 1 228 7 8 182 11 13 64 18 17 196 0 2 652 0 20 4 1 0 12 chain 246454 chrX 156040895 + 112586885 112590109 L1PBa1 4058 + 105 3416 8318 39 0 1 26 0 1 85 1 0 64 0 1 19 1 0 83 13 14 12 0 1 4 1 0 111 1 0 52 8 7 30 16 41 413 4 0 468 0 1 18 4 0 62 1 0 4 1 0 80 0 4 176 0 4 97 1 45 210 0 2 120 0 2 35 2 3 39 4 15 204 0 2 516 0 1 199 chain 549002 chrX 156040895 + 112590125 112596271 L1PA3long 6157 + 0 6150 809 126 0 14 14 26 12 1083 1 0 3770 0 1 284 0 4 842 chain 233107 chrX 156040895 + 112596341 112599453 L1PB1 5432 + 2356 5420 8662 22 5 1 121 3 0 10 0 1 743 5 6 389 13 0 74 13 9 883 6 7 472 9 14 30 1 0 8 1 0 12 4 0 11 2 0 50 1 0 18 1 0 43 1 0 16 4 0 7 16 7 13 28 23 24 1 0 21 1 0 13 1 0 16 chain 9837 chrX 156040895 + 112600097 112600256 MLT2B1 522 + 0 140 70746 59 1 2 54 20 0 25 chain 308742 chrX 156040895 + 112604901 112608385 L1PA4 6152 + 2559 6151 6644 424 0 1 185 3 4 80 0 103 485 0 1 250 0 1 670 0 1 1387 chain 121182 chrX 156040895 + 112616159 112617699 THE1C-int 1605 + 0 1597 15321 110 0 54 280 0 8 299 18 10 469 0 1 169 1 0 4 0 1 150 0 2 40 chain 97626 chrX 156040895 + 112647208 112648336 L1PA7 6471 + 5343 6468 18570 279 0 2 180 5 4 650 4 0 10 chain 3672 chrX 156040895 + 112656638 112656682 L1MB7 1623 + 3 47 93794 44 chain 8297 chrX 156040895 + 112661656 112661765 HY1 111 + 0 110 74165 82 1 2 26 chain 43077 chrX 156040895 + 112673998 112674515 L1PB1 5432 + 4017 4540 32727 137 0 2 8 0 4 372 chain 37266 chrX 156040895 + 112674516 112674964 L1PB1 5432 + 4543 4993 36574 86 0 1 48 0 1 314 chain 5138 chrX 156040895 + 112674971 112675047 L1PB1 5432 + 5158 5232 84968 9 2 0 65 chain 3802 chrX 156040895 + 112675053 112675093 L1PB1 5432 + 5237 5277 92833 40 chain 6545 chrX 156040895 + 112675125 112675252 L1PB1 5432 + 5296 5418 79175 8 1 4 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 14 chain 127356 chrX 156040895 + 112699478 112700955 L1P2 5180 + 2009 3495 14378 28 0 1 956 0 1 236 7 11 201 0 3 49 chain 3393 chrX 156040895 + 112700955 112700991 L1P2 5180 + 3454 3490 96129 36 chain 550222 chrX 156040895 + 112718614 112724627 L1PA2 6032 + 5 6019 727 69 0 1 182 1 0 1940 0 1 3821 chain 42656 chrX 156040895 + 112750408 112750883 L1PA5 6144 + 4680 5155 32966 475 chain 3930 chrX 156040895 + 112807224 112807285 L1MCa 1829 + 430 490 91905 13 9 8 39 chain 14329 chrX 156040895 + 112866977 112867196 L1PA8 5853 + 5637 5853 63152 39 1 0 11 6 2 48 5 4 19 1 0 73 1 2 6 0 3 9 chain 13960 chrX 156040895 + 112937820 112938019 L1PA8 5853 + 5658 5853 63645 20 2 1 10 2 1 49 3 2 19 1 0 93 chain 60358 chrX 156040895 + 112938020 112939015 L1MA1 4479 + 3263 4162 26272 126 3 0 42 1 0 87 1 0 57 1 0 4 87 14 122 3 2 22 2 0 16 9 8 63 1 0 15 10 8 10 1 0 88 1 0 5 3 0 126 1 0 29 2 0 33 2 1 10 1 0 11 chain 17308 chrX 156040895 + 113024513 113024869 L1PB1 5432 + 5105 5427 59444 9 1 0 24 1 0 9 1 0 10 6 2 10 7 5 46 2 1 15 1 0 44 1 0 16 25 12 19 2 0 5 17 14 24 1 0 21 1 0 13 1 0 16 1 0 7 chain 72171 chrX 156040895 + 113079787 113080711 L1PB 1623 + 524 1453 23491 88 9 14 84 0 8 4 8 0 456 3 1 132 0 3 132 1 0 7 chain 380762 chrX 156040895 + 113088664 113093655 L1PB1 5432 + 56 5082 5467 17 31 33 46 0 11 310 18 4 139 1 3 186 1 10 548 7 13 19 1 0 15 21 8 126 0 4 133 0 1 26 10 9 338 0 12 74 0 1 358 9 7 468 0 8 426 0 1 201 0 2 108 1 0 241 0 1 172 0 7 243 1 0 78 1 2 163 0 1 376 1 0 77 chain 32831 chrX 156040895 + 113120755 113121135 L1PA7 6471 + 6085 6464 39645 5 0 1 16 2 0 357 chain 10267 chrX 156040895 + 113140059 113140181 Tigger3a 397 + 154 276 69869 122 chain 7250 chrX 156040895 + 113152930 113153026 L1MD2 1676 + 895 993 76813 43 0 2 53 chain 14109 chrX 156040895 + 113274139 113274299 L1PBa1 4058 + 70 230 63440 160 chain 5632 chrX 156040895 + 113274654 113274729 L1PB1 5432 + 5348 5420 82651 22 1 0 21 1 0 13 1 0 16 chain 46724 chrX 156040895 + 113284501 113285074 L1PA8 5853 + 5221 5853 30760 343 1 0 22 0 14 8 2 0 55 0 50 27 2 1 19 1 0 93 chain 17446 chrX 156040895 + 113293453 113293640 L1PA3long 6157 + 5962 6149 59300 187 chain 56471 chrX 156040895 + 113307232 113308106 L1MA4 2864 + 1789 2661 27436 42 1 0 4 0 1 31 11 12 129 1 0 12 4 5 93 16 19 41 11 6 49 11 22 49 10 2 28 3 0 33 1 0 134 1 0 18 1 2 140 chain 11142 chrX 156040895 + 113309285 113309431 MER2 342 + 136 289 68348 46 0 7 100 chain 46727 chrX 156040895 + 113310752 113311603 L1PREC2 3366 + 2186 3002 30759 47 33 0 7 0 33 422 0 1 21 1 0 34 3 1 15 42 41 42 1 0 4 2 0 9 33 25 16 7 2 15 10 8 22 44 30 21 chain 39357 chrX 156040895 + 113317700 113318161 L1PA7 6471 + 5998 6461 35109 132 2 1 306 0 3 21 chain 50574 chrX 156040895 + 113325411 113325956 L1PA2 6032 + 4977 5522 29358 545 chain 37681 chrX 156040895 + 113362520 113363045 L1P3 4156 + 2968 3492 36282 128 0 1 62 10 9 172 14 12 55 3 4 70 0 1 6 1 0 4 chain 110882 chrX 156040895 + 113372618 113373946 L1PA7 6471 + 5144 6468 16953 5 2 0 194 5 1 159 0 2 115 2 1 79 0 2 437 1 0 159 1 0 10 1 2 158 chain 42763 chrX 156040895 + 113377895 113378442 L1PA8 5853 + 5313 5853 32909 251 1 0 46 2 0 64 19 17 49 2 1 19 1 0 93 chain 29025 chrX 156040895 + 113401980 113402426 LTR7 482 + 0 477 43284 86 0 50 19 8 9 21 51 0 39 8 40 19 1 0 194 chain 43981 chrX 156040895 + 113405491 113406151 L1PB2 3958 + 2949 3592 32140 196 9 1 53 0 1 35 5 0 61 13 11 53 0 3 13 2 0 58 6 4 10 7 3 94 3 4 4 0 1 38 chain 24177 chrX 156040895 + 113422299 113422675 THE1D 372 + 0 372 50530 48 9 0 71 5 11 54 12 9 112 8 11 24 1 0 32 chain 40384 chrX 156040895 + 113431224 113431684 L1PA5 6144 + 5673 6132 34396 316 1 0 143 chain 485545 chrX 156040895 + 113446058 113451461 L1PA3long 6157 + 620 6156 3518 156 0 128 1590 0 1 140 0 1 532 0 1 727 0 2 2258 chain 71492 chrX 156040895 + 113468141 113469026 L1PA8 5853 + 4970 5853 23655 35 5 4 279 0 1 275 1 0 44 2 0 74 1 0 11 1 0 10 0 1 40 2 1 15 1 0 49 0 4 40 chain 533674 chrX 156040895 + 113479278 113485405 L1PA5 6144 + 0 6144 1671 234 4 5 1461 4 5 800 0 1 290 1 0 293 0 10 409 0 1 8 0 1 365 0 2 2104 0 1 154 chain 79186 chrX 156040895 + 113566357 113567219 L1PA3long 6157 + 5287 6149 21808 862 chain 262362 chrX 156040895 + 113687125 113690039 L1HS 6032 + 563 3479 7900 874 0 2 2040 chain 103026 chrX 156040895 + 113708343 113709513 L1PA5 6144 + 4250 5427 17948 94 0 4 280 1 0 669 0 4 126 chain 62799 chrX 156040895 + 113709513 113710221 L1PA5 6144 + 5430 6138 25681 708 chain 33023 chrX 156040895 + 113751959 113752320 L1PA3long 6157 + 5796 6157 39500 361 chain 29537 chrX 156040895 + 113760399 113760775 MLT2A1 477 + 0 382 42565 168 5 2 67 1 0 4 3 5 15 0 8 113 chain 344996 chrX 156040895 + 113760830 113765026 HERVL-int 5654 + 0 5654 5984 700 5 1 424 0 1 39 5 13 1225 0 3 546 0 4 151 0 1416 209 0 1 34 4 10 118 0 3 24 0 5 7 1 2 220 12 23 182 0 3 290 chain 34391 chrX 156040895 + 113765026 113765460 MLT2A1 477 + 0 477 38437 168 9 12 205 3 43 49 chain 85064 chrX 156040895 + 113782531 113783520 L1PA6 6164 + 5168 6162 20609 484 14 19 491 chain 118254 chrX 156040895 + 113795919 113797460 THE1A-int 1579 + 1 1572 15839 98 0 1 39 9 5 492 9 12 4 1 0 4 0 1 516 10 41 348 1 0 10 chain 6017 chrX 156040895 + 113811979 113812089 MER34B 572 + 99 216 81014 47 15 23 23 8 7 17 chain 18531 chrX 156040895 + 113852943 113853298 THE1D 372 + 2 372 58072 31 74 72 61 26 27 26 3 19 134 chain 109951 chrX 156040895 + 113870861 113872298 THE1D-int 1627 + 25 1577 17083 316 7 109 312 7 22 390 19 17 386 chain 26979 chrX 156040895 + 113915797 113916155 MER54A 897 + 534 893 46299 6 0 1 98 0 1 109 8 9 130 2 0 5 chain 21734 chrX 156040895 + 113967845 113968118 L1P1 4361 + 4056 4328 54187 39 0 1 51 2 1 156 2 1 23 chain 3490 chrX 156040895 + 113976633 113976676 LTR49 580 + 505 548 95311 43 chain 27738 chrX 156040895 + 113988394 113988824 LTR7Y 441 + 0 441 45266 103 9 0 57 68 84 33 0 2 64 0 2 96 chain 37193 chrX 156040895 + 113990609 113991079 LTR5_Hs 974 + 1 974 36615 16 0 4 47 1 0 221 19 505 119 0 14 47 chain 10007 chrX 156040895 + 113993524 113993719 LTR49-int 1717 + 1425 1619 70411 24 1 2 60 1 2 11 25 23 23 5 4 45 chain 41883 chrX 156040895 + 114030534 114031026 MER9a1 513 + 0 513 33435 203 1 0 42 1 23 245 chain 5030 chrX 156040895 + 114034640 114034721 MADE1 96 + 0 96 85511 21 9 24 51 chain 26078 chrX 156040895 + 114040091 114040480 LTR7 482 + 0 474 47609 69 8 46 109 12 0 7 0 13 21 1 32 17 0 10 41 1 2 11 0 4 92 chain 312789 chrX 156040895 + 114040490 114044230 HERVH-int 3825 + 0 3824 6555 333 1 0 134 10 66 37 1 0 10 1 0 7 8 4 11 48 0 15 2 39 35 0 58 15 49 1 13 0 1 46 0 1 615 0 1 243 4 31 581 0 1 350 0 3 725 0 2 446 chain 30911 chrX 156040895 + 114051228 114051625 LTR7 482 + 0 477 41210 69 8 46 109 0 1 10 0 31 48 0 10 153 chain 56362 chrX 156040895 + 114057141 114058213 MER4E1 777 + 1 770 27468 17 1 2 215 19 5 179 326 0 37 0 1 69 5 25 20 0 1 49 0 14 135 chain 4595 chrX 156040895 + 114059470 114059528 MER4B 649 + 488 546 87818 58 chain 66157 chrX 156040895 + 114132376 114133332 L1PB1 5432 + 4389 5303 24919 237 4 0 52 0 1 244 1 0 4 0 1 64 1 4 105 43 15 22 1 0 5 20 15 9 2 0 53 2 1 16 1 0 44 1 0 15 3 0 7 chain 522411 chrX 156040895 + 114183185 114190047 L1PA7 6471 + 0 6463 2161 404 1 2 155 0 1 287 1 0 7 1 2 22 0 1 350 0 4 208 0 6 8 6 0 380 0 1 28 2 0 287 0 1 194 0 1 75 0 3 205 14 0 254 0 4 303 13 31 117 0 1 86 0 1 47 0 2 6 4 2 456 0 1 20 0 4 520 0 1 145 2 0 578 0 1 60 0 1 348 1 0 77 0 2 63 4 0 61 446 19 112 1 0 193 0 4 45 0 1 265 chain 9560 chrX 156040895 + 114207029 114207130 L1PA4 6152 + 6037 6138 71347 101 chain 26046 chrX 156040895 + 114250503 114250898 MSTC 436 + 0 424 47666 96 8 15 26 0 24 61 0 1 11 8 0 52 15 17 37 0 3 81 chain 30357 chrX 156040895 + 114392898 114393340 MLT2A1 477 + 0 477 41707 169 4 1 9 1 2 23 0 1 36 2 0 135 10 8 13 8 48 32 chain 133413 chrX 156040895 + 114395569 114398361 L1P1 4361 + 2738 4284 13700 476 1244 0 237 0 2 55 1 0 498 3 0 144 1 0 80 0 1 53 chain 111455 chrX 156040895 + 114396051 114397276 L1PA3long 6157 + 4922 6147 16883 1225 chain 23124 chrX 156040895 + 114402334 114402590 L1PA2 6032 + 5776 6032 52177 256 chain 52960 chrX 156040895 + 114457914 114458496 L1PA3long 6157 + 5573 6155 28590 582 chain 39453 chrX 156040895 + 114466671 114467113 LTR7 482 + 0 474 35039 224 0 1 22 1 32 195 chain 290613 chrX 156040895 + 114467123 114470801 HERVH-int 3825 + 0 3825 7110 212 0 11 250 13 69 28 1 0 10 1 0 9 4 0 14 7 1 15 45 0 11 4 1 25 1 0 13 7 8 6 2 0 11 63 0 23 22 1 11 2 1 49 1 0 444 15 0 458 8 35 411 5 6 213 0 4 754 0 1 15 8 218 487 chain 39503 chrX 156040895 + 114472060 114472531 LTR7 482 + 0 482 35010 143 25 5 116 0 31 187 chain 76312 chrX 156040895 + 114492314 114493497 L1PA3long 6157 + 4988 6157 22487 230 14 0 939 chain 4090 chrX 156040895 + 114507253 114507528 L1MB7 1623 + 1146 1413 90847 41 209 201 25 chain 332916 chrX 156040895 + 114520897 114524609 L1PA4 6152 + 2151 5880 6169 328 1 17 288 5 0 199 0 1 266 0 3 1183 0 1 261 0 1 1181 chain 4827 chrX 156040895 + 114527037 114527277 L1MB1 2102 + 1877 2066 86554 52 113 108 15 46 0 14 chain 24802 chrX 156040895 + 114572668 114572949 AluSp 311 + 16 297 49586 281 chain 553698 chrX 156040895 + 114700576 114706720 L1PA3long 6157 + 6 6157 502 1033 0 1 181 0 1 1097 5 6 946 0 2 673 0 1 28 0 1 169 0 1 1160 0 1 649 2 0 201 chain 19981 chrX 156040895 + 114738526 114738804 L1PA8 5853 + 5582 5853 56410 28 2 0 72 1 0 10 6 3 32 0 1 12 2 1 19 1 0 93 chain 36987 chrX 156040895 + 114745020 114745629 L1MA2 4263 + 3465 4076 36741 32 1 0 87 2 0 4 1 0 28 0 25 21 1 0 43 11 9 81 14 11 22 8 3 102 33 32 93 7 0 18 chain 4826 chrX 156040895 + 114753363 114753423 MLT1D 503 + 443 503 86557 60 chain 27120 chrX 156040895 + 114820519 114820851 THE1A 353 + 0 342 46095 110 1 0 7 3 14 211 chain 36460 chrX 156040895 + 114847202 114847597 L1PA3long 6157 + 5762 6157 37098 395 chain 15488 chrX 156040895 + 114855991 114856168 L1P1 4361 + 4151 4328 61671 134 0 1 19 1 0 23 chain 9521 chrX 156040895 + 114885256 114885390 Tigger3a 397 + 141 318 71430 7 0 10 76 5 38 46 chain 44910 chrX 156040895 + 114925617 114926282 MER50 708 + 10 682 31632 128 5 8 11 3 15 42 13 4 163 13 14 79 33 34 124 1 0 50 chain 15672 chrX 156040895 + 114928815 114929064 LTR62 707 + 380 635 61434 17 6 4 65 0 4 63 23 27 75 chain 30743 chrX 156040895 + 114976736 114977070 L1PA3long 6157 + 5177 5511 41358 334 chain 58366 chrX 156040895 + 114977070 114977715 L1PA3long 6157 + 5512 6156 26844 640 1 0 4 chain 58218 chrX 156040895 + 114998882 115000000 MER41-int 2638 + 1794 2614 26895 82 5 3 23 1 0 6 312 0 125 2 0 5 0 1 56 2 0 13 10 16 30 0 4 134 0 9 151 1 2 160 chain 13047 chrX 156040895 + 115040252 115040396 L1PA4 6152 + 6002 6146 65032 144 chain 29316 chrX 156040895 + 115053994 115054325 L1PA4 6152 + 5816 6152 42852 325 0 5 6 chain 28986 chrX 156040895 + 115061756 115062655 LTR12 884 + 0 400 43353 25 1 0 68 25 0 55 148 0 127 107 0 69 239 0 19 0 21 16 chain 6205 chrX 156040895 + 115061930 115062051 LTR12 884 + 214 269 56911 37 66 0 18 chain 3589 chrX 156040895 + 115061967 115062033 LTR12 884 + 317 366 70171 19 18 2 27 1 0 1 chain 632 chrX 156040895 + 115062051 115062078 LTR12 884 + 55 82 50171 27 chain 6852 chrX 156040895 + 115062205 115062290 LTR12 884 + 77 162 73398 85 chain 4626 chrX 156040895 + 115062420 115062471 LTR12 884 + 276 327 87665 51 chain 2165 chrX 156040895 + 115062595 115062618 LTR12 884 + 55 78 105456 23 chain 10270 chrX 156040895 + 115062655 115063094 LTR12 884 + 222 365 50171 73 255 0 55 41 0 15 chain 3515 chrX 156040895 + 115062728 115062769 LTR12 884 + 163 204 68856 41 chain 8104 chrX 156040895 + 115062775 115062876 LTR12 884 + 235 336 74631 101 chain 2395 chrX 156040895 + 115062876 115062904 LTR12 884 + 229 257 79892 28 chain 3464 chrX 156040895 + 115062941 115062983 LTR12 884 + 55 97 65617 42 chain 3381 chrX 156040895 + 115063038 115063079 LTR12 884 + 152 193 65617 41 chain 24051 chrX 156040895 + 115096969 115097255 AluSc5 308 + 5 294 50727 26 0 1 242 1 3 17 chain 299865 chrX 156040895 + 115099643 115103784 L1PA11 4918 + 439 4567 6835 443 14 0 8 0 14 699 6 10 140 12 13 31 2 1 14 1 2 346 1 0 123 31 37 153 0 2 65 2 0 47 3 1 120 48 17 91 5 6 31 1 2 278 0 1 30 7 8 127 0 3 161 4 0 203 2 0 245 1 0 417 5 0 60 14 46 34 8 6 14 1 0 16 48 35 13 4 3 12 chain 271968 chrX 156040895 + 115118199 115121171 L1PA3long 6157 + 3175 6147 7658 2972 chain 176799 chrX 156040895 + 115141914 115146364 L1MA2 4263 + 517 4217 10736 138 5 7 58 5 4 73 7 9 235 33 23 211 1635 965 7 1 0 38 8 49 187 0 2 16 7 4 13 0 4 84 5 3 121 1 0 4 1 2 133 21 22 440 1 3 86 1 5 77 1 3 38 7 4 5 1 0 72 1 0 100 0 2 32 13 10 152 15 13 87 7 0 14 10 13 15 194 85 19 4 2 11 chain 19962 chrX 156040895 + 115143951 115144309 THE1B 368 + 0 368 56448 47 35 36 80 12 11 24 10 11 4 0 1 10 11 19 125 chain 4027 chrX 156040895 + 115197940 115197988 L1M2 1805 + 768 816 91258 48 chain 43463 chrX 156040895 + 115206291 115206801 MER9a3 513 + 0 513 32473 18 0 2 414 0 1 78 chain 22969 chrX 156040895 + 115209252 115209596 THE1B 368 + 0 368 52407 40 0 15 117 1 0 24 3 0 5 29 42 125 chain 127598 chrX 156040895 + 115209596 115211162 THE1B-int 1605 + 0 1591 14342 264 2 0 166 0 25 10 0 2 1124 chain 23059 chrX 156040895 + 115211178 115211520 THE1B 368 + 2 368 52280 42 0 15 113 1 0 26 35 45 125 chain 21321 chrX 156040895 + 115319543 115319940 L1MA1 4479 + 3038 3413 54733 107 1 0 12 2 0 17 22 17 60 20 12 21 0 2 30 32 27 46 3 0 24 chain 28098 chrX 156040895 + 115359580 115359954 THE1C 375 + 2 375 44720 64 0 2 57 3 0 56 3 4 4 1 0 26 0 2 4 1 0 128 1 0 26 chain 52154 chrX 156040895 + 115362071 115362757 LTR12_ 688 + 0 688 28828 22 1 0 16 3 1 51 26 1 30 0 25 21 2 1 91 1 0 253 1 0 40 0 8 128 chain 45820 chrX 156040895 + 115381638 115382300 L1MA2 4263 + 3488 4114 31152 86 2 0 10 6 0 78 1 0 91 14 0 56 3 0 149 1 0 6 2 1 93 7 0 46 1 0 10 chain 48743 chrX 156040895 + 115510125 115510749 LTR12 884 + 0 884 30035 25 1 0 109 0 2 204 1 2 36 6 28 191 0 236 51 chain 5022 chrX 156040895 + 115528534 115528610 MER53 195 - 103 177 85553 17 3 1 56 chain 4511 chrX 156040895 + 115552266 115552349 MER58B 340 + 247 332 88264 23 20 22 40 chain 24573 chrX 156040895 + 115671466 115671753 AluSp 311 + 12 302 49894 79 0 3 208 chain 65900 chrX 156040895 + 115673738 115674504 L1P2 5180 + 1831 2598 24977 495 5 6 266 chain 44219 chrX 156040895 + 115708443 115708944 LTR2C 499 + 0 499 32001 172 3 0 305 0 1 21 chain 125211 chrX 156040895 + 115914721 115916139 L1PA5 6144 + 4718 6140 14667 557 0 4 861 chain 150761 chrX 156040895 + 115954282 115957131 MER57-int 2662 + 40 2498 12301 30 46 29 9 1 0 118 9 252 16 1 0 24 5 0 60 0 2 109 4 0 157 23 31 69 1 0 78 0 3 69 0 1 6 10 10 13 341 0 240 0 2 32 1 0 4 0 1 30 1 0 6 1 2 290 7 3 93 0 7 59 12 14 142 8 20 35 316 0 96 13 19 118 3 0 82 12 26 16 0 2 33 chain 297212 chrX 156040895 + 115962773 115966745 L1PB1 5432 + 1449 5413 6915 95 0 4 56 0 5 434 3 14 9 12 0 24 2 1 22 0 2 465 0 3 352 0 4 326 0 1 153 0 2 300 4 0 4 22 0 11 4 1 43 0 1 294 3 5 124 0 2 141 1 2 260 8 13 41 13 16 425 8 10 22 1 0 7 20 15 9 2 0 53 1 2 13 0 15 31 1 0 15 24 12 19 8 5 4 1 0 10 2 0 19 1 0 5 1 0 34 1 0 9 chain 429371 chrX 156040895 + 115982682 115988004 L1PA7 6471 + 0 6461 4758 330 0 1 81 6 1 1483 0 3 108 7 0 18 6 0 355 0 1 60 1 0 200 7 2 58 1 0 312 0 1 172 0 15 10 1 3 7 0 1 275 1 0 25 3 1 46 18 15 131 0 4 136 2 1141 194 2 1 100 0 1 208 0 1 119 7 6 72 0 2 438 0 1 322 chain 31463 chrX 156040895 + 115991749 115992994 L1M1 2793 + 568 1391 40766 11 1 0 11 3 0 8 133 69 28 227 199 9 1 0 80 51 50 78 0 4 9 1 2 4 1 0 48 321 0 90 16 9 114 chain 5722 chrX 156040895 + 116010988 116011050 HERVH-int 3825 + 0 62 82249 62 chain 26317 chrX 156040895 + 116031583 116031916 L1PB1 5432 + 3305 3638 47244 333 chain 29717 chrX 156040895 + 116033531 116033956 L1PB1 5432 + 3630 4046 42351 94 28 17 137 1 0 72 4 7 89 chain 34237 chrX 156040895 + 116033956 116034394 L1PB1 5432 + 4047 4485 38534 338 4 3 37 0 1 59 chain 42278 chrX 156040895 + 116034455 116035013 L1PB1 5432 + 4546 5103 33208 80 3 0 365 0 3 10 1 0 99 chain 5925 chrX 156040895 + 116035014 116035132 L1PB1 5432 + 5105 5212 81379 9 3 0 24 1 0 9 1 0 9 17 11 45 chain 3371 chrX 156040895 + 116035140 116035199 L1PB1 5432 + 5219 5277 96378 18 5 4 36 chain 31428 chrX 156040895 + 116035263 116035720 MER9a3 513 + 44 513 40791 56 10 11 52 28 29 64 1 0 40 0 10 128 0 1 78 chain 361865 chrX 156040895 + 116036398 116040961 HERVK9-int 4720 + 345 4718 5783 664 13 14 119 3 5 479 5 6 121 8 9 17 0 1 720 0 1 130 0 4 840 0 3 412 205 0 588 0 1 226 1 0 4 0 1 8 chain 31840 chrX 156040895 + 116040975 116041455 MER9a3 513 + 37 513 40463 68 5 6 68 12 13 64 1 0 40 0 10 102 22 6 17 14 15 67 chain 50432 chrX 156040895 + 116072724 116073412 L1P3 4156 + 2810 3502 29403 61 0 1 19 9 4 195 0 1 206 0 6 110 1 0 6 0 1 55 13 14 13 chain 11256 chrX 156040895 + 116101459 116101614 L1M1 2793 + 2495 2652 68156 126 5 7 24 chain 34325 chrX 156040895 + 116105681 116106129 LTR7 482 + 0 475 38474 100 21 15 117 1 32 122 0 2 87 chain 31041 chrX 156040895 + 116116621 116117039 L1P5 443 + 7 434 41095 30 6 7 89 0 8 293 chain 531497 chrX 156040895 + 116121201 116127338 L1PA4 6152 + 0 6143 1775 271 1 0 449 0 4 438 0 3 67 0 1 78 1 0 786 4 6 386 4 0 684 1 0 29 2 1 2094 0 4 842 chain 88927 chrX 156040895 + 116141115 116142309 THE1A-int 1579 + 360 1574 19869 198 2 1 59 2 1 6 14 0 99 0 1 11 1 13 182 1 2 7 1 0 174 7 30 262 1 0 4 0 1 150 1 0 8 0 1 4 chain 557452 chrX 156040895 + 116159208 116165340 L1PA3long 6157 + 10 6142 273 3167 1 0 1463 0 1 1501 chain 52661 chrX 156040895 + 116184081 116184681 L1PA5 6144 + 5274 5880 28681 73 1 0 75 0 7 451 chain 33212 chrX 156040895 + 116190838 116191215 L1PA7 6471 + 5037 5414 39334 377 chain 49417 chrX 156040895 + 116243382 116243982 LTR12 884 + 0 754 29797 209 13 167 378 chain 313704 chrX 156040895 + 116244004 116247956 HERV9-int 5642 + 5 5642 6542 594 6 5 191 1 0 308 83 0 132 10 9 1009 0 6 581 0 1795 294 0 1 26 3 4 269 1 0 218 16 14 22 0 2 12 3 1 26 4 3 16 1 2 40 1 0 7 0 1 5 28 5 19 4 0 3 2 0 17 chain 68376 chrX 156040895 + 116250573 116251491 LTR12 884 + 32 869 24362 338 0 22 263 103 0 214 chain 360173 chrX 156040895 + 116252706 116256887 L1PA4 6152 + 0 5521 5801 967 0 1 537 0 1305 273 0 33 58 1 0 764 0 1 1558 0 1 23 chain 9029 chrX 156040895 + 116283381 116283534 L1MA3 4352 + 4157 4302 72499 77 5 1 18 7 5 24 1 0 6 1 0 14 chain 32717 chrX 156040895 + 116289080 116289502 MER41C 542 + 0 486 39740 49 0 1 231 0 62 47 2 1 6 0 2 87 chain 15680 chrX 156040895 + 116294319 116294516 MER41C 542 + 344 542 61420 170 0 1 27 chain 107276 chrX 156040895 + 116310845 116312029 L1PA3long 6157 + 3064 4247 17407 372 2 0 510 0 1 300 chain 173871 chrX 156040895 + 116312029 116313937 L1PA3long 6157 + 4249 6157 10900 1908 chain 24162 chrX 156040895 + 116319017 116319486 L1M1 2793 + 772 1247 50556 25 16 15 19 2 0 8 1 0 31 43 44 80 1 0 4 0 1 4 1 0 19 5 15 47 9 11 39 8 7 39 1 0 67 chain 180330 chrX 156040895 + 116332401 116334608 HERVH-int 3825 + 1174 3566 10575 52 15 0 206 11 1 870 0 1 495 1 0 321 9 219 14 6 0 5 3 9 199 chain 5843 chrX 156040895 + 116387786 116387862 MER5A1 166 + 85 161 81723 76 chain 6814 chrX 156040895 + 116391902 116391979 L1PA5 6144 + 6064 6141 78266 77 chain 121583 chrX 156040895 + 116410423 116411992 THE1B-int 1605 + 0 1600 15244 182 0 3 171 6 9 5 3 0 62 14 39 365 0 3 761 chain 36186 chrX 156040895 + 116424430 116424854 L1PA7 6471 + 6033 6458 37284 103 0 1 321 chain 116394 chrX 156040895 + 116480734 116482182 L1PA7 6471 + 5060 6468 16157 182 0 8 12 42 0 92 2 1 267 2 0 686 5 6 147 4 0 7 chain 3088 chrX 156040895 + 116526123 116526158 MER5A1 166 + 130 165 98891 35 chain 14042 chrX 156040895 + 116531016 116531168 L1PA4 6152 + 3503 3655 63530 152 chain 70632 chrX 156040895 + 116613722 116614605 L1P3 4156 + 3238 4139 23837 235 0 2 19 1 0 459 1 0 130 0 18 5 0 1 7 2 1 24 chain 54552 chrX 156040895 + 116616365 116616977 L1PA5 6144 + 5521 6135 28025 473 0 1 6 0 1 133 chain 9726 chrX 156040895 + 116624265 116624409 LTR5A 1029 + 0 148 70988 76 11 17 14 2 0 41 chain 22085 chrX 156040895 + 116624445 116624709 L1PA7 6471 + 6204 6468 53723 264 chain 97876 chrX 156040895 + 116632902 116634222 L1PA8 5853 + 4536 5853 18537 462 0 1 96 0 1 377 1 2 89 1 0 18 0 2 5 2 0 17 11 9 37 12 10 17 1 0 9 0 1 51 2 1 18 8 7 41 14 15 31 chain 18443 chrX 156040895 + 116647037 116647243 L1PA5 6144 + 5932 6138 58179 206 chain 34873 chrX 156040895 + 116662031 116662411 L1PA4 6152 + 5771 6151 38107 380 chain 77859 chrX 156040895 + 116667984 116669014 HUERS-P2-int 2744 + 1295 2308 22128 104 0 1 772 12 14 66 1 0 4 24 5 47 chain 30617 chrX 156040895 + 116672859 116673284 MLT2A1 477 + 0 404 41453 142 0 1 25 0 4 152 1 0 59 21 2 12 6 0 7 chain 78176 chrX 156040895 + 116681581 116682546 L1PA7 6471 + 5500 6470 22054 117 5 4 629 0 5 178 11 13 20 1 0 4 chain 137343 chrX 156040895 + 116715780 116717410 L1PA4 6152 + 4271 5976 13312 40 0 2 6 95 166 143 0 1 774 0 1 572 chain 17697 chrX 156040895 + 116741461 116741662 HERV17-int 4347 + 2329 2528 59011 75 2 0 124 chain 14898 chrX 156040895 + 116771218 116771417 MLT2A2 560 + 5 196 62390 122 7 0 53 1 0 16 chain 201316 chrX 156040895 + 116784491 116788982 L1PB1 5432 + 1397 5419 9672 25 17 15 108 1538 1079 208 3 0 115 0 1 263 2 0 53 1 2 213 0 10 245 0 2 83 0 1 63 7 20 61 0 2 194 0 1 6 1 0 6 0 1 152 1 2 49 17 15 121 0 2 20 8 6 4 0 1 79 4 1 274 1 3 196 9 8 7 1 0 20 1 0 13 1 0 10 5 1 11 2 0 51 2 1 16 1 0 44 1 0 4 57 43 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 15 chain 130472 chrX 156040895 + 116789781 116791349 L1PA7 6471 + 4883 6464 13983 617 0 2 119 1 7 72 1 4 517 4 5 32 0 1 205 chain 33586 chrX 156040895 + 116820483 116821008 HERVL-int 5654 + 0 512 39015 337 76 64 107 1 0 4 chain 43876 chrX 156040895 + 116918907 116919578 MER11A 1151 + 505 1151 32208 33 0 1 29 0 1 106 4 7 128 0 26 26 43 0 24 22 4 29 1 2 45 0 1 132 1 0 6 1 6 25 1 0 15 chain 130213 chrX 156040895 + 116979884 116981618 L1PA7 6471 + 4626 6467 14012 201 4 0 795 2 0 88 1 0 93 1 5 30 3 6 24 0 4 196 94 94 17 6 109 179 chain 9092 chrX 156040895 + 117103893 117104009 L1MA8 2339 + 1357 1534 72362 106 0 61 10 chain 4590 chrX 156040895 + 117146387 117147232 L1PA7 6471 + 5278 6127 23352 25 2 1 321 1 5 416 0 1 80 chain 255636 chrX 156040895 + 117153236 117156625 L1P2 5180 + 1560 4942 8099 392 2 1 422 7 6 510 1 0 35 6 7 39 24 26 211 1 2 60 0 2 19 0 1 222 18 0 175 15 17 792 0 4 209 1 2 51 22 0 8 0 22 105 1 0 4 0 1 37 chain 1847 chrX 156040895 + 117159453 117159793 L1PA7 6471 + 6127 6466 23352 92 2 0 238 0 1 8 chain 19536 chrX 156040895 + 117163881 117164242 THE1D 372 + 0 349 56976 51 25 13 68 50 55 5 3 0 92 1 0 56 1 0 9 chain 249372 chrX 156040895 + 117166103 117190766 L1PA4 6152 + 2272 6152 8256 52 1 0 99 1 4 568 17 9 205 2 1 727 1 2 1230 21302 525 123 0 1 185 1 0 149 chain 64386 chrX 156040895 + 117179372 117181830 L1PA3long 6157 + 3444 5909 25328 1188 0 7 1270 chain 4838 chrX 156040895 + 117208728 117208820 L1MA5 2750 + 2570 2661 86482 41 21 21 14 1 0 15 chain 14812 chrX 156040895 + 117247886 117248154 LTR12C 1709 + 650 876 62510 33 41 0 66 2 17 7 15 0 64 1 0 39 chain 2455 chrX 156040895 + 117247927 117247960 LTR12C 1709 + 891 1168 85359 24 0 244 9 chain 25186 chrX 156040895 + 117248691 117249012 PABL_A 660 + 338 660 48976 150 0 1 171 chain 550485 chrX 156040895 + 117260698 117266810 L1PA3long 6157 + 23 6149 706 544 0 4 478 0 2 138 1 4 3477 0 1 633 0 4 841 chain 514060 chrX 156040895 + 117268069 117274493 L1PA7 6471 + 0 6468 2567 408 1 2 137 0 19 149 11 12 158 0 11 19 29 1 584 0 1 245 7 8 6 1 0 415 1 0 173 1 2 62 1 0 255 0 30 422 1 2 479 0 1 1947 0 1 72 1 0 82 1 0 424 1 12 167 7 14 84 10 6 51 5 0 7 chain 11872 chrX 156040895 + 117276121 117276433 L1MA7 2200 + 1822 2105 67065 7 1 0 28 10 14 70 80 61 35 24 13 39 2 0 16 chain 22604 chrX 156040895 + 117279322 117279570 LTR7Y 441 + 0 248 52982 248 chain 291027 chrX 156040895 + 117279580 117283179 HERVH-int 3825 + 0 3825 7102 488 0 1 43 127 0 38 1 0 10 1 0 4 57 143 36 0 2 13 0 3 671 0 2 231 4 31 299 0 10 1045 9 11 38 0 210 71 11 18 174 3 8 225 chain 40689 chrX 156040895 + 117284438 117284879 LTR7Y 441 + 0 441 34155 441 chain 112865 chrX 156040895 + 117307378 117308888 L1P3 4156 + 2645 4139 16689 448 0 4 397 1 0 31 0 1 259 60 63 157 44 23 66 1 2 11 9 6 26 chain 13191 chrX 156040895 + 117312961 117313226 L1PB1 5432 + 5182 5424 64793 38 19 17 44 1 0 15 4 1 14 8 0 16 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 29192 chrX 156040895 + 117320398 117320706 AluYk12 309 + 0 308 43058 308 chain 21245 chrX 156040895 + 117321951 117322303 THE1C 375 + 0 354 54827 100 49 53 27 6 5 165 1 0 4 chain 63943 chrX 156040895 + 117322318 117323232 THE1C-int 1605 + 0 1605 25424 16 1 2 35 0 1 48 7 0 23 4 58 261 36 676 166 23 25 294 chain 25665 chrX 156040895 + 117360343 117360700 THE1B 368 + 0 368 48220 15 2 0 25 4 18 24 4 5 82 1 0 124 1 0 75 chain 116127 chrX 156040895 + 117360727 117362244 THE1B-int 1605 + 27 1600 16206 65 0 2 336 1 26 282 5 6 25 16 28 480 3 19 304 chain 30271 chrX 156040895 + 117380198 117380543 L1PA5 6144 + 5795 6140 41789 345 chain 135297 chrX 156040895 + 117394498 117396089 LTR12C 1709 + 0 1709 13511 436 0 1 282 0 118 275 1 0 4 4 2 17 4 0 89 0 4 16 3 5 460 chain 30834 chrX 156040895 + 117417845 117418298 LTR7B 505 + 0 495 41280 108 0 10 25 0 1 31 0 38 12 34 27 26 0 2 82 1 0 79 14 13 41 chain 26961 chrX 156040895 + 117418383 117418753 HERVH-int 3825 + 78 446 46322 255 1 0 53 40 39 21 chain 66327 chrX 156040895 + 117421019 117421870 HERVH-int 3825 + 2970 3823 24864 260 28 30 42 1 0 79 0 1 441 chain 3789 chrX 156040895 + 117421993 117422034 LTR7B 505 + 454 495 92921 41 chain 66292 chrX 156040895 + 117422837 117423670 HERVL-int 5654 + 4815 5654 24878 376 0 8 26 10 8 421 chain 3901 chrX 156040895 + 117433622 117433682 L1PA7 6471 + 5638 5698 92109 45 1 0 4 1 2 9 chain 63720 chrX 156040895 + 117433682 117434452 L1PA7 6471 + 5700 6466 25471 301 6 4 454 2 0 7 chain 494923 chrX 156040895 + 117443149 117449574 L1PA7 6471 + 0 6469 3293 239 15 16 152 34 35 95 0 1 39 28 26 16 0 1 40 0 2 47 33 38 258 0 24 10 24 0 213 16 35 110 0 3 336 18 17 219 0 1 667 0 1 218 1 0 133 1 6 33 14 5 448 1 2 4 1 0 32 1 0 6 0 1 16 1 5 61 0 1 153 5 6 202 0 1 265 21 22 407 0 4 152 0 1 124 1 0 89 4 3 148 2 0 5 1 3 299 0 1 64 0 1 53 1 4 92 0 1 291 0 2 5 3 1 458 chain 7792 chrX 156040895 + 117458051 117458210 L1M3e 1964 + 50 195 75386 36 38 26 38 1 0 7 1 0 38 chain 5938 chrX 156040895 + 117472026 117472111 L1MB8 1703 + 1475 1561 81322 26 3 4 56 chain 15262 chrX 156040895 + 117495508 117495683 L1PA7 6471 + 6132 6307 61962 175 chain 13225 chrX 156040895 + 117495695 117495846 L1PA7 6471 + 6319 6470 64737 151 chain 39420 chrX 156040895 + 117496891 117497545 L1PREC2 3366 + 139 777 35063 31 1 0 10 2 0 17 10 5 7 1 0 19 8 7 12 1 0 7 1 0 6 1 0 26 2 0 5 4 1 104 6 4 64 0 1 5 6 5 153 23 27 122 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156040895 + 117658177 117658228 L1MB3 1562 + 1369 1420 87801 51 chain 152001 chrX 156040895 + 117660951 117662730 L1PA6 6164 + 4389 6162 12227 924 13 11 679 7 8 6 1 0 139 4 0 6 chain 105639 chrX 156040895 + 117768885 117770385 LTR12C 1709 + 0 1709 17605 168 0 1 4 1 0 83 3 29 10 29 15 26 5 48 80 3 1 8 18 0 230 0 159 209 0 47 106 35 4 54 2 1 16 6 7 313 7 6 84 chain 145765 chrX 156040895 + 117779433 117781057 L1PA3long 6157 + 2629 4252 12632 541 2 1 1081 chain 65806 chrX 156040895 + 117798483 117799762 L1PA7 6471 + 5178 6465 25000 310 0 1 135 2 0 79 3 0 510 0 7 93 7 14 132 2 0 6 chain 213529 chrX 156040895 + 117808735 117811701 L1PB1 5432 + 12 5236 9219 7 1 0 80 10 12 203 18 19 189 5 8 22 0 1 7 2 1 44 0 3 158 1 0 9 7 10 96 1 0 7 0 1 250 4 16 88 5 9 38 0 2229 130 0 1 82 2 0 150 0 1 215 0 1 335 0 1 40 0 4 145 1 2 168 8 0 8 1 9 238 6 11 6 0 3 5 0 2 27 6 2 9 1 0 24 1 0 9 1 0 4 27 21 48 2 1 15 chain 180957 chrX 156040895 + 117881552 117884318 L1MA2 4263 + 1369 4110 10550 52 0 5 22 0 4 82 18 24 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5160 6142 19607 982 chain 6738 chrX 156040895 + 118395403 118395501 L1MB3 1562 + 1458 1555 78518 65 5 4 28 chain 47197 chrX 156040895 + 118470504 118471785 LTR12 884 + 0 873 30573 24 1 0 29 0 2 22 91 0 146 518 0 120 42 1 32 2 0 131 0 7 61 5 241 57 chain 1854 chrX 156040895 + 118470606 118470671 LTR12 884 + 78 143 49925 65 chain 10747 chrX 156040895 + 118470888 118471063 LTR12 884 + 55 189 68960 120 41 0 14 chain 3425 chrX 156040895 + 118471008 118471049 LTR12 884 + 68 109 83967 41 chain 2082 chrX 156040895 + 118471096 118471169 LTR12 884 + 289 362 49925 73 chain 9250 chrX 156040895 + 118471192 118471309 LTR12 884 + 55 172 72022 88 5 5 24 chain 2580 chrX 156040895 + 118471467 118471497 LTR12 884 + 289 319 60351 30 chain 67804 chrX 156040895 + 118582613 118583426 L1PA7 6471 + 5643 6457 24494 252 9 10 172 0 1 236 1 0 143 chain 3376 chrX 156040895 + 118759073 118759116 MamRep1894 122 + 2 45 96338 43 chain 140310 chrX 156040895 + 118798773 118800660 LTR12C 1709 + 0 1707 13076 309 0 1 4 1 0 351 119 0 167 2 0 6 0 1 13 78 0 259 0 1 4 8 4 104 0 4 91 0 15 19 0 2 352 chain 6220 chrX 156040895 + 118799453 118799557 LTR12C 1709 + 799 943 51793 19 0 40 85 chain 2093 chrX 156040895 + 118799745 118799780 LTR12C 1709 + 1053 1088 51793 35 chain 3074 chrX 156040895 + 118799780 118799823 LTR12C 1709 + 650 693 46339 43 chain 74048 chrX 156040895 + 118858740 118860477 Tigger1 2417 + 1013 2026 23078 168 15 19 260 2 1 25 11 19 112 754 19 390 chain 19912 chrX 156040895 + 118859684 118860087 MSTA 426 + 0 426 56503 103 0 1 9 6 10 10 25 35 35 1 0 4 1 3 28 74 81 107 chain 35074 chrX 156040895 + 118884536 118885000 LTR71A 459 + 0 459 37972 159 12 6 57 0 2 183 2 1 51 chain 34636 chrX 156040895 + 118891288 118891744 LTR71A 459 + 0 459 38262 219 2 4 80 6 7 149 chain 9451 chrX 156040895 + 118928507 118928630 LTR75 556 + 364 486 71604 117 1 0 5 chain 366644 chrX 156040895 + 118992778 118998578 L1PB1 5432 + 59 5404 5717 29 6 5 36 0 2 265 1 0 5 3 0 361 1 0 283 0 2 7 1 2 173 4 6 160 1 0 7 2 0 2 4 0 40 16 11 17 0 4 68 0 4 71 8 7 16 1 0 4 1 2 28 301 0 506 1 0 312 7 4 26 2 4 290 1 0 7 10 5 12 1 0 88 0 4 69 0 2 9 1 0 6 155 332 344 1 6 31 0 3 45 0 1 4 325 0 134 0 14 22 2 0 339 0 4 172 14 5 145 0 1 84 0 2 191 0 2 55 0 3 66 13 14 7 0 1 5 2 1 25 0 4 21 1 2 10 3 0 23 1 0 5 20 15 9 2 0 14 1 4 34 1 0 18 1 0 44 1 0 7 0 1 7 1 0 4 24 13 14 8 5 14 2 0 6 0 1 17 1 0 21 1 0 13 chain 9978 chrX 156040895 + 118996049 118996167 L1PB1 5432 - 2113 2231 70465 118 chain 129729 chrX 156040895 + 119029331 119030880 LTR12C 1709 + 0 1709 14069 526 1 0 165 0 159 261 1 0 8 2 0 105 0 4 52 1 2 427 chain 28391 chrX 156040895 + 119033939 119034275 LTR14A 344 + 0 344 44281 171 0 4 91 0 4 74 chain 5586 chrX 156040895 + 119034942 119035015 L1MB2 1706 + 1605 1677 82862 6 1 0 66 chain 6060 chrX 156040895 + 119045503 119045570 MLT2B4 540 + 48 115 80869 67 chain 3393 chrX 156040895 + 119084561 119084597 L1PB1 5432 + 5245 5281 96135 36 chain 3935 chrX 156040895 + 119084598 119084706 L1PB1 5432 + 5281 5391 91861 15 14 1 27 14 30 16 1 0 21 chain 40998 chrX 156040895 + 119111283 119111762 L1PA7 6471 + 5988 6464 33971 471 3 0 5 chain 6756 chrX 156040895 + 119131310 119131455 L1PA16 3655 + 3506 3619 78458 71 10 0 14 22 5 7 5 0 16 chain 3831 chrX 156040895 + 119132114 119132227 MLT1E1A 663 + 436 557 92640 18 58 66 37 chain 14924 chrX 156040895 + 119137577 119137791 MER30 238 + 0 238 62362 108 4 0 7 1 23 12 3 9 79 chain 188878 chrX 156040895 + 119164126 119166181 L1PA3long 6157 + 4103 6157 10170 1908 1 0 146 chain 61771 chrX 156040895 + 119180706 119181412 L1PA5 6144 + 5437 6144 25921 347 4 5 355 chain 41813 chrX 156040895 + 119187229 119188169 MER51A 677 + 16 661 33476 89 0 1 38 0 10 22 0 44 18 0 19 4 0 1 135 7 0 115 2 1 20 4 6 9 364 0 113 chain 16082 chrX 156040895 + 119245301 119245523 MER30 238 + 0 238 60914 93 0 3 12 4 14 67 1 4 45 chain 99059 chrX 156040895 + 119299884 119301152 LTR12C 1709 + 386 1709 18409 313 0 159 253 1 0 6 2 0 107 0 4 171 105 0 310 chain 39325 chrX 156040895 + 119307260 119307811 MLT2A2 560 + 0 560 35133 204 0 1 74 0 10 19 22 0 59 23 46 77 0 1 57 4 0 12 chain 33648 chrX 156040895 + 119309707 119310150 MER4A1 472 + 0 458 38964 232 0 21 16 18 11 46 0 1 131 chain 186566 chrX 156040895 + 119313427 119316828 MER4-int 2692 + 5 2692 10270 6 1 0 25 2 0 63 3 0 8 11 8 9 1 3 158 0 1 39 0 1 33 0 1 26 0 2 390 0 13 37 0 2 348 0 1 209 2 230 278 321 0 287 317 0 117 45 0 8 0 46 75 0 1 55 330 0 19 23 33 155 chain 36681 chrX 156040895 + 119316836 119317310 MER4A1 472 + 0 472 36963 12 0 1 246 15 12 201 chain 141257 chrX 156040895 + 119331691 119333359 LTR12C 1709 + 0 1709 13004 812 0 40 259 0 1 4 5 1 107 0 4 481 chain 43357 chrX 156040895 + 119333415 119334062 LTR12C 1709 + 2 650 25613 157 10 11 480 chain 26207 chrX 156040895 + 119334062 119334862 LTR12C 1709 + 928 1709 21943 184 132 10 102 0 4 25 0 1 184 1 99 172 chain 7371 chrX 156040895 + 119334246 119334356 LTR12C 1709 + 674 784 25613 110 chain 5539 chrX 156040895 + 119352356 119352509 L1PB3 3668 + 3481 3620 83086 14 2 0 8 2 1 24 8 6 32 8 4 12 21 17 15 1 0 6 chain 143593 chrX 156040895 + 119361361 119363037 SVA_D 2077 + 0 2077 12795 560 0 40 124 0 3 34 3 0 156 4 268 118 0 98 214 0 1 7 2 1 441 1 0 12 chain 5700 chrX 156040895 + 119365071 119365160 MER58B 340 + 147 232 82343 48 10 6 31 chain 38112 chrX 156040895 + 119389110 119389675 MER51A 677 + 0 661 35981 176 0 44 15 34 54 37 0 8 47 0 1 4 0 30 100 3 2 17 0 2 50 10 2 72 chain 14538 chrX 156040895 + 119423741 119423905 U1 164 + 0 164 62857 164 chain 7555 chrX 156040895 + 119456557 119456650 HY3 101 + 0 94 75976 69 0 1 24 chain 2742 chrX 156040895 + 119532011 119532215 L2a 937 + 12 210 102015 15 20 14 16 127 127 26 chain 13813 chrX 156040895 + 119534783 119534990 L1MB2 1706 + 911 1104 63858 94 14 8 4 1 0 49 7 0 38 chain 24604 chrX 156040895 + 119556319 119556599 AluY 311 + 18 299 49860 108 0 1 172 chain 9175 chrX 156040895 + 119698029 119698213 THE1D 372 + 1 157 72178 55 10 1 17 3 0 6 38 22 55 chain 9351 chrX 156040895 + 119718242 119718356 L1MB7 1623 + 612 726 71812 114 chain 3438 chrX 156040895 + 119733370 119733406 MLT1C 463 + 225 261 95756 36 chain 20272 chrX 156040895 + 119741498 119741795 THE1B 368 + 0 306 56051 172 4 3 23 35 45 63 chain 4936 chrX 156040895 + 119767525 119767628 MSTB1 431 + 64 166 85974 50 32 31 21 chain 46735 chrX 156040895 + 119769279 119769988 LTR12 884 + 0 869 30755 24 1 0 34 2 43 277 2 0 66 31 31 29 0 1 26 0 17 13 0 103 109 50 51 45 chain 93503 chrX 156040895 + 119805480 119806496 L1PA2 6032 + 5011 6032 19112 164 0 5 852 chain 12741 chrX 156040895 + 119826499 119826662 HSMAR2 1300 + 446 620 65539 23 0 3 47 1 0 34 0 9 58 chain 42050 chrX 156040895 + 119856845 119857374 LTR10A 586 + 25 586 33325 34 0 8 7 0 1 28 0 21 17 2 0 5 0 1 63 0 1 33 0 1 36 1 2 303 chain 43197 chrX 156040895 + 119884972 119885457 L1PA5 6144 + 5646 6131 32651 430 0 2 5 2 0 48 chain 42896 chrX 156040895 + 119885773 119886463 MER51A 677 + 0 661 32838 144 0 1 31 60 0 23 10 0 37 5 6 45 7 14 92 9 39 101 1 2 45 8 9 72 chain 112551 chrX 156040895 + 119890418 119891830 LTR12C 1709 + 0 1702 16739 157 0 10 408 0 1 74 0 278 184 1 0 4 4 2 106 0 4 52 35 32 123 14 13 230 0 4 20 chain 38344 chrX 156040895 + 119892008 119892493 LTR2C 499 + 0 499 35818 159 1 3 18 21 33 286 chain 28447 chrX 156040895 + 119953994 119954330 LTR14A 344 + 1 344 44199 170 0 4 64 0 1 21 0 2 81 chain 481353 chrX 156040895 + 119961489 119967359 L1PA5 6144 + 1 6144 3599 120 0 14 1035 9 0 451 0 2 494 309 0 389 0 2 109 0 569 10 1 0 175 1 0 719 0 2 188 0 2 587 0 1 255 0 1 168 1 0 708 0 1 141 chain 64486 chrX 156040895 + 119967996 119968696 L1PA2 6032 + 5330 6028 25315 692 2 0 6 chain 25363 chrX 156040895 + 120004239 120004594 THE1A 353 + 0 353 48681 13 2 0 34 0 1 46 1 0 17 0 2 6 17 15 219 chain 4982 chrX 156040895 + 120033108 120033300 MLT1-int 490 + 165 276 85744 38 121 40 33 chain 27370 chrX 156040895 + 120041754 120042193 LTR7Y 441 + 0 441 45736 103 10 0 62 63 79 72 4 0 125 chain 20091 chrX 156040895 + 120061688 120062035 THE1D 372 + 0 333 56268 12 0 2 15 1 0 25 18 0 20 4 5 60 7 8 19 32 34 25 1 0 108 chain 29876 chrX 156040895 + 120063352 120063760 MLT2A1 477 + 7 411 42156 59 0 1 75 0 1 25 1 5 104 1 0 46 1 0 59 0 1 12 9 0 16 chain 12385 chrX 156040895 + 120068400 120068623 MER57A1 433 + 204 433 66168 37 10 11 19 11 13 14 21 24 111 chain 9412 chrX 156040895 + 120092081 120092287 L1PB1 5432 + 5236 5421 71675 46 1 0 14 26 14 17 2 0 5 1 0 16 2 0 9 16 15 19 1 0 13 1 0 17 chain 213359 chrX 156040895 + 120097943 120100486 Harlequin-int 5206 + 803 3382 9225 111 0 12 281 0 3 98 0 2 838 0 1 349 1 0 52 1 21 272 1 0 539 chain 104010 chrX 156040895 + 120103996 120105217 L1PA7 6471 + 5233 6464 17819 42 0 5 729 1 4 271 0 1 28 6 7 144 chain 49203 chrX 156040895 + 120143042 120143628 LTR10C 591 + 0 591 29865 227 0 2 281 0 2 39 2 3 37 chain 44326 chrX 156040895 + 120144806 120145407 HERVIP10FH-int 2884 + 165 768 31935 23 0 1 18 7 6 5 0 1 175 1 0 5 1 0 85 2 1 48 0 1 4 1 0 97 0 3 78 1 2 50 chain 40959 chrX 156040895 + 120146402 120146884 LTR15 485 + 0 485 33995 402 7 11 68 1 0 4 chain 39684 chrX 156040895 + 120155912 120156374 LTR15 485 + 6 485 34900 68 0 1 256 0 16 138 chain 478279 chrX 156040895 + 120183833 120189167 L1PA4 6152 + 3 5358 3670 186 3 0 1740 1 0 277 3 5 217 0 1 93 1 17 2510 0 1 254 0 5 49 chain 5013 chrX 156040895 + 120199391 120199450 MLT1B 390 + 293 352 85592 59 chain 36980 chrX 156040895 + 120208498 120209398 LTR18B 584 + 0 573 36747 139 11 18 20 61 56 226 339 9 21 0 1 83 chain 4553 chrX 156040895 + 120228861 120228921 MER4A 717 + 658 717 88049 51 1 0 8 chain 44427 chrX 156040895 + 120235198 120235797 MER4A1_ 611 + 9 611 31872 57 13 6 4 1 0 46 7 4 48 1 8 174 0 5 85 0 2 163 chain 9615 chrX 156040895 + 120266956 120267083 MER85 139 + 0 139 71232 96 2 14 29 chain 12439 chrX 156040895 + 120327552 120327740 MER30 238 + 41 238 66084 41 0 1 14 22 33 66 3 0 42 chain 7970 chrX 156040895 + 120340944 120341074 L1PB1 5432 + 5297 5427 74948 30 2 0 5 1 0 14 2 0 24 1 0 10 0 9 15 1 0 18 2 0 5 chain 487129 chrX 156040895 + 120344235 120349773 L1PA4 6152 + 0 5517 3492 575 0 1 32 16 0 832 2 1 133 0 1 636 2 0 110 4 0 3196 chain 34937 chrX 156040895 + 120490225 120490659 L1PA8 5853 + 5427 5853 38065 137 1 0 44 2 0 74 1 0 5 3 1 56 1 0 16 1 0 93 chain 9489 chrX 156040895 + 120492646 120492760 MER49 923 + 612 731 71496 37 0 5 77 chain 9073 chrX 156040895 + 120504397 120504517 Tigger1 2417 + 13 148 72397 14 1 16 105 chain 212635 chrX 156040895 + 120519691 120522109 L1PA5 6144 + 3707 6131 9241 515 2 0 113 1 0 6 0 4 283 3 6 235 1 0 223 0 1 206 0 3 824 1 0 5 chain 5794 chrX 156040895 + 120546248 120546370 L1PB1 5432 + 5308 5424 81953 22 16 14 26 1 0 21 1 0 13 3 2 14 1 0 4 chain 32590 chrX 156040895 + 120547641 120548084 MLT2A1 477 + 0 477 39876 140 0 1 27 1 5 212 3 43 10 14 4 16 1 0 19 chain 5074 chrX 156040895 + 120589440 120589498 U3 216 + 0 58 85279 58 chain 3738 chrX 156040895 + 120589899 120589946 MIR 256 + 208 255 93342 47 chain 194087 chrX 156040895 + 120596498 120600845 L1MA1 4479 + 228 4173 9919 50 2 0 9 0 9 22 0 2 208 0 4 35 0 4 172 4 3 37 23 15 104 0 3 6 17 19 49 1 5 163 0 1 530 0 2 271 5 4 130 6 4 27 3 4 42 4 0 31 0 4 396 296 18 38 1344 1213 84 1 0 6 8 5 121 2 1 28 2 0 35 2 1 8 1 0 8 2 0 14 chain 24329 chrX 156040895 + 120631610 120631889 AluYk4 311 + 0 277 50290 64 2 0 213 chain 61361 chrX 156040895 + 120637608 120638581 L1PREC2 3366 + 2058 3000 26021 85 1 0 204 8 12 75 2 3 41 0 1 28 0 1 117 1 2 125 2 0 22 0 1 31 1 0 44 1 0 3 3 0 11 57 44 12 0 7 7 9 0 17 4 1 11 22 8 29 chain 228076 chrX 156040895 + 120650062 120652796 L1PA7 6471 + 3749 6470 8803 87 1 0 166 10 0 33 0 1 629 2 1 546 1 2 39 5 0 96 1 0 122 0 2 148 1 0 541 0 1 109 2 3 195 chain 3730 chrX 156040895 + 120670921 120670967 L1MB3 1562 + 1368 1414 93396 46 chain 248976 chrX 156040895 + 120698529 120701943 L1PA14 3548 + 67 3465 8268 6 1 0 10 12 7 58 4 0 69 1 0 8 14 13 22 16 14 23 8 6 364 0 1 66 0 29 679 22 18 25 1 2 9 1 0 80 0 1 218 2 0 104 2 3 67 0 1 204 0 2 359 2 1 91 3 0 5 17 20 125 5 10 146 8 6 14 2 0 47 2 0 5 2 0 105 2 0 5 2 0 16 2 0 6 1 0 84 1 0 111 1 0 11 4 0 36 4 2 11 2 0 4 1 0 18 1 0 41 6 0 10 chain 45684 chrX 156040895 + 120707357 120707983 L1PA16 3655 + 2952 3575 31217 4 1 0 26 13 15 83 1 0 122 0 4 64 5 0 21 2 0 284 chain 29243 chrX 156040895 + 120710073 120710553 MLT2A2 560 + 0 536 42977 169 5 6 8 1 0 13 50 51 30 23 69 17 3 0 29 0 1 9 0 11 123 chain 4508 chrX 156040895 + 120739162 120739217 MER5A1 166 + 80 135 88281 55 chain 89952 chrX 156040895 + 120807836 120808949 MER11A 1151 + 0 1151 19692 228 1 0 66 0 11 198 0 3 64 2 0 7 6 0 108 3 1 176 7 5 16 1 36 74 0 2 156 chain 6772 chrX 156040895 + 120808984 120809154 L1PB1 5432 + 5260 5409 78408 22 1 0 14 1 0 4 4 6 6 13 0 14 14 11 9 2 0 24 1 0 22 1 0 12 1 0 5 chain 204413 chrX 156040895 + 120811541 120814030 L1P2 5180 + 2 2511 9557 147 1 0 98 1 0 260 1 0 8 1 0 272 1 0 6 1 0 16 0 1 123 0 25 713 0 1 441 0 3 207 4 0 188 chain 53051 chrX 156040895 + 120814030 120814676 LTR6A 649 + 0 649 28556 239 0 3 193 1 0 186 1 2 26 chain 306629 chrX 156040895 + 120814676 120818211 L1PA6 6164 + 2514 6065 6684 581 0 2 605 4 0 342 0 3 353 0 2 95 0 16 178 0 1 67 8 5 551 1 0 750 chain 66355 chrX 156040895 + 120821466 120822262 L1PA8A 6298 + 5492 6291 24858 337 0 1 337 8 16 10 6 0 98 chain 17004 chrX 156040895 + 120836038 120836251 L1PB1 5432 + 4378 4596 59799 138 0 5 75 chain 201795 chrX 156040895 + 120857576 120860543 L1PBa 3878 + 216 2832 9651 21 3 1 173 8 8 105 1 0 113 1 0 108 18 20 5 2 0 355 360 0 487 18 17 131 0 3 5 3 0 48 0 8 97 1 0 40 0 1 96 0 4 504 2 1 140 0 3 122 chain 77042 chrX 156040895 + 121017428 121018270 L1PA3long 6157 + 5310 6152 22305 842 chain 157523 chrX 156040895 + 121040141 121042109 L1PA8 5853 + 3890 5842 11913 19 5 7 496 14 13 15 10 0 418 0 5 64 20 12 158 1 4 461 1 0 47 2 0 69 2 1 10 1 0 55 1 0 16 1 0 82 chain 19816 chrX 156040895 + 121044925 121045343 L1PB1 5432 + 5040 5423 56652 63 1 2 11 6 1 18 1 0 11 1 0 12 5 1 9 2 0 52 2 1 16 2 1 43 1 0 15 1 0 4 23 13 13 17 14 6 2 0 24 1 0 21 1 0 13 1 0 14 1 0 5 chain 6568 chrX 156040895 + 121065957 121066053 THE1B 368 + 272 368 79086 47 1 0 4 7 8 37 chain 49184 chrX 156040895 + 121084218 121084788 LTR22 571 + 0 571 29873 256 1 2 313 chain 30784 chrX 156040895 + 121155447 121155858 MER41C 542 + 0 434 41314 49 0 1 117 8 9 135 7 28 95 chain 26385 chrX 156040895 + 121196866 121197260 LTR25 836 + 0 387 47139 57 1 0 62 1 0 76 33 0 10 0 33 41 9 3 29 0 1 75 chain 42887 chrX 156040895 + 121227786 121228370 MER61F 604 + 0 571 32841 135 22 11 195 14 13 183 1 0 34 chain 230479 chrX 156040895 + 121265513 121267972 L1HS 6032 + 1866 4325 8735 2459 chain 44466 chrX 156040895 + 121269251 121269864 L1PA10 4194 + 644 4150 31846 321 0 1 28 0 1 8 0 1 127 0 2893 92 3 0 34 chain 20325 chrX 156040895 + 121275893 121276150 MSTA-int 1630 + 0 258 55980 15 0 1 242 chain 21345 chrX 156040895 + 121300449 121300683 L1PA3long 6157 + 5923 6157 54713 234 chain 52943 chrX 156040895 + 121356241 121356981 LTR17 781 + 0 757 28594 59 1 0 97 1 0 155 2 0 16 1 0 145 36 36 195 8 30 24 chain 6300 chrX 156040895 + 121359085 121359165 L1MA2 4263 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121479731 THE1C 375 + 113 325 64635 7 3 0 54 33 34 117 chain 18378 chrX 156040895 + 121513090 121513299 L1PA5 6144 + 3988 4197 58264 209 chain 34313 chrX 156040895 + 121522119 121522585 L1PA10 4194 + 3694 4161 38484 79 0 1 17 0 3 288 39 37 32 1 0 10 chain 2180 chrX 156040895 + 121529233 121529336 MER1B 344 - 109 210 105384 12 2 0 14 53 54 4 1 0 17 chain 4903 chrX 156040895 + 121567466 121567518 L1PA2 6032 - 454 506 86138 52 chain 38973 chrX 156040895 + 121567518 121567945 L1PA2 6032 + 5605 6032 35374 427 chain 22670 chrX 156040895 + 121572860 121573166 L1MA3 4352 + 2337 2646 52864 74 0 1 107 0 3 65 1 0 59 chain 5570 chrX 156040895 + 121621547 121621614 MLT2A1 477 + 288 355 82936 67 chain 23387 chrX 156040895 + 121671334 121671612 AluSc 308 + 16 294 51785 278 chain 96630 chrX 156040895 + 121691701 121692748 L1PA3long 6157 + 3777 4824 18700 1047 chain 70597 chrX 156040895 + 121697892 121698673 L1PA2 6032 + 5248 6029 23845 781 chain 77356 chrX 156040895 + 121728111 121728955 L1PA2 6032 + 5195 6032 22230 826 7 0 11 chain 41679 chrX 156040895 + 121751826 121752381 MLT2A2 560 + 11 560 33567 123 19 12 58 0 1 355 chain 23869 chrX 156040895 + 121789717 121790092 MER4A1 472 + 74 472 50998 16 0 5 39 1 0 87 61 67 102 0 13 69 chain 6994 chrX 156040895 + 121819320 121819540 L1PB4 2604 + 2427 2541 77623 48 6 7 48 107 0 11 chain 164327 chrX 156040895 + 121826787 121828571 L1PA2 6032 + 4245 6029 11466 1784 chain 58881 chrX 156040895 + 121841866 121842528 L1PA4 6152 + 5481 6143 26710 662 chain 17737 chrX 156040895 + 121843881 121845239 MLT2A2 560 + 279 560 58965 91 1106 18 14 0 11 147 chain 4654 chrX 156040895 + 121876305 121876395 MER2 342 + 147 227 87509 25 4 5 17 1 0 19 10 0 14 chain 557170 chrX 156040895 + 121877364 121883517 L1PA3long 6157 + 13 6157 291 513 4 0 196 4 0 215 4 0 300 3 0 169 0 5 4302 3 0 389 0 4 51 chain 75238 chrX 156040895 + 121939266 121940316 MER11A 1151 + 0 1133 22787 78 0 8 104 18 17 23 1 0 64 0 11 377 6 9 11 3 4 37 0 4 69 0 2 16 2 60 96 9 8 34 0 1 52 7 6 21 1 0 21 chain 194866 chrX 156040895 + 121961390 121964696 MER4-int 2692 + 36 2692 9896 42 0 6 8 12 10 12 1 3 292 0 19 149 700 0 119 0 2 27 4 1 52 0 13 112 0 1 7 1 0 30 0 1 110 9 1 151 0 1 83 0 19 101 0 1 32 11 7 183 1 0 259 0 2 217 0 1 93 1 3 272 2 0 5 0 1 208 chain 38043 chrX 156040895 + 121974545 121975063 MLT2A2 560 + 0 546 36040 168 11 27 207 0 11 68 8 9 56 chain 512660 chrX 156040895 + 122060755 122067529 L1PA7 6471 + 19 6464 2635 384 0 2 262 1 0 499 18 12 90 33 28 1130 0 3 203 15 0 151 0 1 89 0 1 97 3 0 404 5 4 17 315 1 121 5 6 136 0 1 312 15 16 392 18 19 173 1 0 4 0 2 95 0 4 400 0 2 6 2 0 538 6 2 465 0 4 369 chain 23565 chrX 156040895 + 122073959 122074240 THE1A-int 1579 + 1298 1579 51482 281 chain 75908 chrX 156040895 + 122084032 122084869 L1PA3long 6157 + 5320 6157 22606 837 chain 167972 chrX 156040895 + 122100349 122102752 L1PB1 5432 + 2299 5391 11217 176 0 1 4 1 0 48 9 8 75 3 8 6 5 0 197 1 0 5 0 1 14 1 0 44 0 16 148 3 4 351 1 0 85 0 1 230 0 4 327 54 37 65 0 1 189 0 1 47 1 714 10 3 0 22 1 0 4 36 29 19 0 5 17 1 0 8 2 1 15 1 0 45 1 0 10 76 59 20 1 0 21 chain 115115 chrX 156040895 + 122133870 122136150 THE1C-int 1605 + 43 1590 16371 60 19 17 260 0 1 64 0 7 292 1 0 121 0 5 270 3 5 50 771 21 62 0 1 82 1 2 77 0 1 30 0 1 26 0 1 91 chain 473045 chrX 156040895 + 122140002 122145373 L1PA4 6152 + 0 5351 3785 528 4 0 1253 0 1 537 0 1 24 10 1 1804 0 3 13 0 1 121 0 2 418 16 1 643 chain 8948 chrX 156040895 + 122148779 122148892 MSTD-int 1705 + 1545 1657 72672 93 1 0 19 chain 166287 chrX 156040895 + 122161729 122163568 L1PA3long 6157 + 3166 5011 11318 85 7 12 910 0 1 837 chain 40543 chrX 156040895 + 122222003 122222454 LTR7 482 + 0 482 34275 264 0 31 187 chain 299013 chrX 156040895 + 122222456 122226075 HERVH-int 3825 + 0 3825 6861 386 17 17 106 1 0 23 5 0 38 1 0 10 1 0 24 1 14 13 24 0 5 0 20 42 2 1 12 21 0 18 2 1 49 1 0 235 0 3 206 15 0 462 4 31 291 0 4 1109 8 218 487 chain 39917 chrX 156040895 + 122227334 122227785 LTR7 482 + 0 482 34725 264 0 31 187 chain 205090 chrX 156040895 + 122254423 122257263 L1PA3long 6157 + 3352 6157 9534 353 40 0 587 0 2 56 0 2 1474 0 1 330 chain 27844 chrX 156040895 + 122270405 122270715 AluYb9 318 + 13 315 45116 118 8 0 184 chain 11632 chrX 156040895 + 122276280 122276408 L1PA3long 6157 + 5764 5892 67511 128 chain 12279 chrX 156040895 + 122288747 122288994 L1PB1 5432 + 5101 5322 66315 16 3 0 21 1 0 4 21 16 9 2 0 53 2 1 16 1 0 44 1 0 15 3 0 7 15 6 13 chain 88248 chrX 156040895 + 122305617 122306741 MER11B 1079 + 0 1074 19995 319 0 1 262 57 13 73 1 0 102 0 2 107 0 1 153 0 1 21 11 0 10 0 1 8 chain 295254 chrX 156040895 + 122330935 122334199 L1PA3long 6157 + 2892 6157 6972 795 0 1 2469 chain 25968 chrX 156040895 + 122344124 122344491 L1PA8 5853 + 5493 5853 47765 71 1 0 37 9 7 68 6 5 19 9 8 32 2 1 19 1 0 93 chain 3976 chrX 156040895 + 122353112 122353158 MADE1 96 + 50 96 91598 46 chain 158734 chrX 156040895 + 122396338 122398081 L1PA3long 6157 + 4410 6156 11827 1255 0 2 151 0 1 337 chain 41401 chrX 156040895 + 122404356 122404813 L1PA2 6032 + 5578 6031 33733 415 4 0 38 chain 12130 chrX 156040895 + 122448282 122448440 L1PBa 3878 + 1522 1683 66605 26 0 1 72 0 2 60 chain 15921 chrX 156040895 + 122448448 122448755 L1PB1 5432 + 5048 5326 61128 54 1 0 12 3 0 24 1 0 4 3 2 11 8 4 8 2 0 52 1 0 17 1 0 45 5 1 14 2 0 6 15 6 18 chain 26859 chrX 156040895 + 122480529 122480926 L1PA7 6471 + 5470 5882 46459 101 16 6 19 22 50 40 13 5 7 0 5 179 chain 89118 chrX 156040895 + 122482191 122483297 MER11B 1079 + 2 1079 19835 262 3 0 504 6 0 54 18 0 243 5 3 11 chain 159409 chrX 156040895 + 122497014 122498780 L1PA3long 6157 + 4058 5827 11785 836 1 0 410 0 4 519 chain 120341 chrX 156040895 + 122528500 122529825 L1PA3long 6157 + 4421 5746 15472 1325 chain 16703 chrX 156040895 + 122530843 122531069 L1MA1 4479 + 2547 2771 60146 55 1 0 65 2 1 103 chain 211742 chrX 156040895 + 122548707 122551058 L1PA3long 6157 + 1781 4140 9294 584 0 1 810 1 2 542 0 3 173 0 2 48 0 1 193 chain 7709 chrX 156040895 + 122578145 122578239 L1PA15 4387 - 1969 2063 75603 94 chain 21530 chrX 156040895 + 122596330 122596618 AluSg7 307 + 11 300 54471 97 1 2 21 0 1 6 18 17 145 chain 319903 chrX 156040895 + 122609556 122613562 HERVL-int 5654 + 0 4443 6409 587 1 2 66 3 0 70 1 0 4 0 1 307 0 2 660 0 3 378 2 11 342 3 0 514 0 1 473 0 429 100 2 0 493 chain 7531 chrX 156040895 + 122619507 122621627 L1PA7 6471 + 6319 6468 76046 17 1971 0 132 chain 58785 chrX 156040895 + 122655369 122656086 SVA_A 1864 + 1177 1864 26743 60 8 5 73 40 12 487 0 1 49 chain 388807 chrX 156040895 + 122673285 122678643 L1PB1 5432 + 77 5420 5335 67 0 1 65 9 11 145 0 2 34 7 6 152 6 33 169 1 0 119 0 1 6 1 0 198 5 1 164 3 1 64 6 5 76 14 0 204 4 9 113 16 12 288 0 8 464 49 49 297 3 1 166 1 0 717 12 7 230 0 1 335 0 1 10 0 1 197 0 2 100 11 12 32 0 1 158 4 3 286 0 1 11 1 0 25 1 0 9 19 14 6 2 0 50 9 8 12 16 15 29 1 0 15 3 0 7 35 23 20 2 0 24 1 0 21 1 0 13 1 0 16 chain 27210 chrX 156040895 + 122689026 122689391 THE1B 368 + 0 368 45951 18 2 0 18 1 6 130 2 1 25 0 2 92 2 1 75 chain 22324 chrX 156040895 + 122689744 122690220 L1PB3 3668 + 3143 3554 53373 54 7 9 85 2 1 22 19 28 39 22 21 79 74 4 11 1 0 7 1 0 25 3 1 25 chain 59118 chrX 156040895 + 122706529 122707228 L1PA7 6471 + 5762 6461 26631 61 1 2 130 1 0 352 0 7 6 7 0 141 chain 19772 chrX 156040895 + 122729001 122729239 L1PA6 6164 + 5913 6152 56709 97 1 2 140 chain 103667 chrX 156040895 + 122733359 122734782 L1PA10 4194 + 2718 4161 17855 6 3 0 82 0 10 21 0 3 72 2 5 34 8 9 68 2 1 92 0 2 432 5 9 221 0 3 294 1 0 10 24 24 34 1 0 11 chain 80167 chrX 156040895 + 122800075 122801128 MER11C 1089 + 0 1073 21598 246 0 9 35 1 4 23 0 4 65 1 0 135 0 1 4 1 0 8 43 42 95 0 1 18 0 4 5 1 0 38 0 1 127 0 1 53 1 0 145 0 1 8 chain 108700 chrX 156040895 + 122804166 122805466 L1PA6 6164 + 4830 6162 17218 58 0 9 7 0 5 387 0 4 17 2 0 76 7 14 382 0 7 207 1 2 78 0 1 78 chain 7136 chrX 156040895 + 122805854 122805962 L1M3 994 + 222 328 77144 75 4 3 11 1 0 17 chain 27879 chrX 156040895 + 122806134 122806601 MLT2A2 560 + 47 560 45065 133 2 0 13 2 5 9 5 7 82 18 50 17 16 12 31 8 20 79 0 1 7 6 4 33 0 4 6 chain 31649 chrX 156040895 + 122834987 122835456 MLT2A1 477 + 0 477 40626 142 0 1 26 0 4 151 1 0 4 0 1 25 75 78 45 chain 61856 chrX 156040895 + 122837716 122838413 L1PA5 6144 + 5434 6132 25901 567 0 1 130 chain 10652 chrX 156040895 + 122842470 122842595 L1P3 4156 + 3094 3220 69122 32 0 1 93 chain 370361 chrX 156040895 + 122880962 122886251 L1PB1 5432 + 29 5404 5647 277 10 9 171 86 87 55 10 11 117 1 0 625 0 3 6 2 1 44 23 9 157 13 1 96 0 1 397 5 2 15 1 3 347 0 124 99 0 1 133 2 1 11 0 2 52 0 3 101 1 0 17 3 1 109 0 1 82 1 0 221 19 29 276 7 8 532 1 4 4 1 0 139 0 1 155 4 5 54 7 4 17 0 7 21 0 1 29 1 0 96 1 8 92 0 2 198 26 11 24 8 6 14 5 1 9 2 0 52 2 1 15 1 0 46 2 1 13 2 0 7 15 6 17 3 1 5 1 0 11 6 4 18 6 5 22 1 0 12 chain 161420 chrX 156040895 + 122908512 122911335 L1PA14 3548 + 67 3465 11651 6 1 0 10 12 7 58 2 0 59 37 31 25 9 7 30 2 0 27 14 18 152 134 5 99 0 1 36 0 1 18 3 5 42 6 7 171 8 10 51 0 37 98 27 13 29 4 14 184 5 4 131 3 0 5 126 841 40 13 13 185 1 0 140 6 5 234 1 0 4 0 1 15 33 29 36 9 5 102 10 6 17 2 0 5 2 1 79 10 9 64 0 1 41 1 0 12 5 1 35 4 2 8 1 0 9 1 0 17 1 0 40 6 0 10 chain 8546 chrX 156040895 + 122908985 122909088 L1PA14 3548 + 856 959 73571 103 chain 426334 chrX 156040895 + 122916146 122921004 L1PA5 6144 + 419 6131 4794 180 0 1 158 0 107 568 1 0 633 0 3 125 0 2 643 0 1 73 0 3 388 0 737 746 0 2 504 1 0 838 chain 26360 chrX 156040895 + 122971744 122972118 THE1C 375 + 0 375 47181 181 25 26 129 1 2 11 1 0 26 chain 53156 chrX 156040895 + 122972118 122972848 THE1C-int 1605 + 0 737 28513 432 13 20 43 6 7 22 9 8 205 chain 8460 chrX 156040895 + 123000000 123000121 L1PB1 5432 + 4977 5100 73775 37 4 6 80 chain 10485 chrX 156040895 + 123000121 123000342 L1PB1 5432 + 5103 5296 69440 11 17 0 20 1 0 10 1 0 13 6 2 9 2 0 52 18 16 45 1 0 15 chain 5137 chrX 156040895 + 123000386 123000488 L1PB1 5432 + 5327 5423 84976 5 1 0 14 2 0 24 1 0 22 2 1 11 7 6 13 chain 11732 chrX 156040895 + 123010411 123010572 L1PA10 4194 + 4007 4161 67345 75 3 0 34 8 5 29 1 0 11 chain 296226 chrX 156040895 + 123022137 123026073 L1PB1 5432 + 1448 5408 6943 89 0 4 35 0 7 120 0 1 130 3 1 91 0 1 337 2 5 129 0 1 338 0 1 148 0 3 60 5 5 54 1 0 139 0 1 555 1 2 5 1 0 281 0 1 304 3 0 233 0 1 92 1 2 187 3 4 288 96 118 16 2 1 42 1 0 8 28 20 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 4 chain 29986 chrX 156040895 + 123051659 123051980 AluYb9 318 + 0 318 42069 132 3 0 186 chain 98291 chrX 156040895 + 123051997 123053178 L1PA7 6471 + 5191 6466 18510 110 0 1 25 0 6 27 0 79 194 0 1 66 1 4 140 0 1 291 0 1 319 0 2 8 chain 297496 chrX 156040895 + 123055880 123059133 L1PA3long 6157 + 2905 6157 6903 2402 1 0 850 chain 75674 chrX 156040895 + 123067535 123068507 L1PA13 3608 + 2524 3485 22668 608 0 1 27 1 0 114 2 0 61 1 0 55 9 6 47 9 5 20 1 0 17 chain 231428 chrX 156040895 + 123123122 123126518 L1PA13 3608 + 86 3497 8710 21 9 7 23 7 4 22 1 0 14 3 0 10 0 3 10 14 7 10 4 1 19 17 19 29 1 0 6 1 0 92 125 127 6 2 0 17 2 1 96 2 0 104 0 1 6 0 2 123 0 6 88 0 1 123 0 1 68 1 23 285 0 5 46 1 5 380 3 0 64 0 4 370 12 9 70 2 1 44 1 0 227 1 0 229 0 8 209 1 0 27 1 0 114 2 0 62 1 0 23 1 0 22 5 4 12 2 0 47 9 5 20 1 0 20 0 3 6 chain 95233 chrX 156040895 + 123129750 123130917 L1P3 4156 + 406 1573 18879 131 4 0 139 1 0 534 0 4 67 1 2 290 chain 28403 chrX 156040895 + 123132515 123132861 MER48 407 + 0 346 44264 30 0 1 4 1 0 311 chain 71165 chrX 156040895 + 123132872 123133706 L1PA7 6471 + 5615 6467 23726 244 0 3 229 0 1 44 0 1 136 0 13 181 chain 64969 chrX 156040895 + 123133719 123134668 L1PREC2 3366 + 1863 2798 25196 69 4 0 30 0 2 5 1 0 196 1 7 71 30 31 81 16 0 4 0 1 161 1 0 4 0 1 18 0 1 4 1 0 168 2 0 18 0 1 14 2 0 48 chain 38822 chrX 156040895 + 123164148 123164650 L1PB 1623 + 381 886 35487 15 1 0 67 0 3 19 6 5 117 1 0 4 0 1 205 0 1 62 0 1 5 chain 545594 chrX 156040895 + 123282947 123289428 L1PA7 6471 + 0 6467 993 402 0 1 278 2 1 658 0 1 319 8 9 19 6 5 660 1 2 277 16 0 917 7 11 59 0 1 1889 0 1 112 6 4 84 2 0 749 2 0 8 chain 7883 chrX 156040895 + 123316774 123316903 Tigger3a 397 + 0 178 75174 75 18 67 36 chain 55788 chrX 156040895 + 123452922 123453551 L1PA5 6144 + 5517 6144 27631 27 0 1 22 3 0 577 chain 58862 chrX 156040895 + 123505976 123506897 L1MA2 4263 + 3204 4113 26716 156 0 3 83 8 10 90 52 49 63 17 16 128 7 4 139 22 20 93 7 0 47 1 0 8 chain 56167 chrX 156040895 + 123507314 123507968 L1PA3long 6157 + 4524 5173 27517 300 5 0 349 chain 28982 chrX 156040895 + 123521945 123522259 L1PA3long 6157 + 5056 5370 43361 314 chain 30494 chrX 156040895 + 123535641 123535994 L1PA5 6144 + 5785 6140 41575 199 0 1 9 0 1 145 chain 7647 chrX 156040895 + 123547070 123547178 L1PB4 2604 + 2432 2548 75755 16 5 13 87 chain 185116 chrX 156040895 + 123547923 123550123 HERVL-int 5654 + 3433 5646 10330 11 1 0 74 6 0 184 0 16 70 8 1 519 0 1 446 5 11 459 3 0 119 0 7 295 chain 32706 chrX 156040895 + 123550123 123550520 MLT2A1 477 + 3 401 39757 168 4 1 7 0 1 24 0 1 178 0 2 16 chain 202215 chrX 156040895 + 123566137 123568555 L1PA7 6471 + 4036 6467 9632 332 2 1 205 1 0 4 0 1 89 0 4 52 2 1 896 0 3 24 5 4 48 0 2 156 0 9 592 2 0 8 chain 197962 chrX 156040895 + 123570475 123573213 L1PBa 3878 + 29 2723 9778 10 2 0 8 4 1 12 3 0 3 1 0 16 4 0 6 1 0 5 2 0 10 2 1 38 48 12 6 3 0 6 1 0 47 0 4 20 2 0 124 0 10 90 26 38 26 1 0 241 2 3 91 0 2 101 27 28 458 0 2 17 4 12 137 7 0 845 0 1 70 11 0 136 0 1 32 9 1 23 chain 467652 chrX 156040895 + 123573821 123579966 L1PA8 5853 + 50 5853 3918 22 2 0 6 5 4 13 34 13 84 7 5 6 0 1 96 20 8 326 0 6 10 7 1 161 0 2 316 0 20 143 1 2 724 15 0 110 0 3 307 302 0 384 0 1 46 3 1 43 7 6 76 0 1 132 0 1 203 2 0 60 0 1 73 12 0 67 2 1 267 0 2 103 0 2 75 7 9 17 6 5 319 1 0 524 0 5 143 1 0 3 1 0 555 1 0 44 2 0 70 17 15 46 6 5 16 1 0 93 chain 55378 chrX 156040895 + 123587851 123588474 SVA_B 1603 + 908 1603 27750 12 4 0 49 1 0 5 0 77 552 chain 525985 chrX 156040895 + 123648009 123654406 L1PA7 6471 + 0 6461 2001 314 1 0 4 3 5 75 7 1 8 1 2 25 8 7 210 1 0 576 0 4 61 7 16 261 0 1 366 1 0 553 2 0 31 0 2 117 0 2 60 1 0 450 0 8 325 1 2 5 1 0 58 0 4 27 0 1 155 8 5 257 0 19 57 1 0 595 0 8 266 0 2 294 0 1 83 1 0 10 1 0 143 0 6 87 1 0 56 0 4 71 2 3 155 0 9 594 chain 5014 chrX 156040895 + 123660792 123660856 L1MA4A 3247 + 3068 3131 85589 39 1 0 24 chain 49066 chrX 156040895 + 123664207 123664769 L1PA5 6144 + 4984 5551 29925 159 0 1 143 0 1 101 1 4 158 chain 83590 chrX 156040895 + 123679647 123680632 LTR5_Hs 974 + 0 974 20893 283 14 0 539 6 12 36 3 0 104 chain 29904 chrX 156040895 + 123722098 123722437 L1PA8 5853 + 5225 5564 42130 339 chain 3685 chrX 156040895 + 123722438 123722483 L1PA8 5853 + 5564 5608 93703 36 1 0 8 chain 18224 chrX 156040895 + 123722485 123722728 L1PA8 5853 + 5608 5847 58436 73 1 0 12 1 0 47 2 1 19 2 1 86 chain 133495 chrX 156040895 + 123733493 123734995 SVA_D 2077 + 0 2075 13691 13 1 0 12 1 0 76 0 3 502 17 15 207 0 574 673 chain 31950 chrX 156040895 + 123735319 123735689 L1PA5 6144 + 5761 6140 40382 234 1 10 135 chain 3548 chrX 156040895 + 123753040 123753084 MLT1D 503 + 441 485 94866 44 chain 26430 chrX 156040895 + 123757938 123758295 THE1B 368 + 0 368 47085 44 1 16 136 3 1 97 2 0 74 chain 121349 chrX 156040895 + 123758313 123759856 THE1B-int 1605 + 28 1599 15288 91 5 4 309 16 41 673 0 2 217 0 2 232 chain 25032 chrX 156040895 + 123759862 123760219 THE1B 368 + 0 368 49226 39 0 15 111 8 7 24 3 1 43 0 4 5 3 0 44 2 0 75 chain 27407 chrX 156040895 + 123777296 123777677 LTR7 482 + 0 465 45690 101 0 50 73 5 37 44 0 1 113 13 14 32 chain 27647 chrX 156040895 + 123812200 123812511 AluYk4 311 + 0 308 45398 123 3 0 185 chain 6727 chrX 156040895 + 123816702 123816780 LTR12F 595 + 402 480 78554 78 chain 10884 chrX 156040895 + 123821923 123822058 MER51B 395 + 66 207 68721 31 0 6 104 chain 10927 chrX 156040895 + 123847262 123847419 L1MA4A 3247 + 2955 3107 68654 14 4 1 65 2 0 72 chain 38971 chrX 156040895 + 123849909 123850413 LTR10F 562 + 0 562 35377 106 1 57 67 5 1 18 9 16 13 1 0 284 chain 26767 chrX 156040895 + 123916457 123916753 AluY 311 + 6 303 46588 126 0 1 170 chain 85904 chrX 156040895 + 123931987 123933807 THE1C-int 1605 + 421 1605 20466 24 9 16 230 7 0 10 0 7 421 5 4 29 15 7 173 10 13 14 326 0 63 0 4 92 315 0 77 chain 24332 chrX 156040895 + 123957394 123957704 AluSx 319 + 5 315 50280 43 0 1 121 1 0 145 chain 5030 chrX 156040895 + 123978664 123978892 Tigger4a 237 + 0 237 85521 15 0 15 11 1 120 15 138 13 48 chain 27945 chrX 156040895 + 124001419 124001829 Tigger3b 1229 + 791 1198 44960 184 1 0 50 1 3 77 0 1 8 6 0 41 25 26 17 chain 3273 chrX 156040895 + 124120494 124120533 L1ME2z 1083 + 683 722 97267 39 chain 4588 chrX 156040895 + 124133304 124133380 U13_ 108 + 34 108 87852 42 11 9 23 chain 4775 chrX 156040895 + 124133836 124133901 L1MD3 1191 + 997 1060 86826 5 2 0 58 chain 86405 chrX 156040895 + 124136439 124137432 LTR13 1007 + 0 1007 20340 74 0 3 95 0 1 131 1 0 77 4 5 375 0 9 102 0 1 134 chain 39231 chrX 156040895 + 124145519 124146038 LTR10G 522 + 0 520 35190 40 1 0 59 1 0 23 7 12 219 0 1 94 4 1 71 chain 78486 chrX 156040895 + 124147131 124148065 L1PA7 6471 + 5446 6389 21984 168 0 4 91 15 16 72 0 4 588 chain 39361 chrX 156040895 + 124148232 124148723 LTR10F 562 + 0 562 35105 106 1 85 40 14 0 207 0 1 123 chain 21436 chrX 156040895 + 124183106 124183336 L1PA4 6152 + 5906 6136 54598 230 chain 10016 chrX 156040895 + 124191834 124192026 Tigger5 388 + 138 324 70392 95 46 42 23 3 1 25 chain 22861 chrX 156040895 + 124235117 124235385 AluSx4 309 + 6 274 52558 268 chain 6880 chrX 156040895 + 124238754 124238859 L1MA7 2200 + 1874 1977 78035 75 11 9 19 chain 111549 chrX 156040895 + 124297177 124298929 L1PA14 3548 + 1823 3485 16873 22 3 0 119 0 1 4 0 1 94 14 15 293 3 5 158 6 5 35 0 4 109 1 0 250 19 15 27 89 25 57 8 9 39 8 4 17 2 0 6 1 0 84 1 0 109 1 0 12 5 1 36 4 2 12 1 0 5 1 0 19 4 3 24 3 1 10 6 0 10 1 0 20 chain 4209 chrX 156040895 + 124362125 124362180 MLT1B-int 1170 + 706 760 90069 43 1 0 11 chain 36736 chrX 156040895 + 124403673 124404164 LTR10F 562 + 6 562 36935 101 1 57 67 1 4 21 7 0 10 5 11 101 1 8 176 chain 131685 chrX 156040895 + 124409318 124410779 L1PA4 6152 + 3933 5402 13857 283 0 5 813 1 0 270 0 4 94 chain 26489 chrX 156040895 + 124424615 124425031 MSTA 426 + 0 425 46994 102 45 54 60 2 0 36 12 14 159 chain 132600 chrX 156040895 + 124451490 124453018 L1PA5 6144 + 4601 6141 13768 692 0 1 7 0 1 253 0 12 8 13 1 71 0 1 162 0 4 158 0 5 164 chain 57486 chrX 156040895 + 124495642 124496273 L1PA3long 6157 + 4418 5049 27108 631 chain 94606 chrX 156040895 + 124514725 124516210 L1PREC2 3366 + 1593 3040 18952 101 0 3 68 1 2 51 14 13 146 0 3 24 1 2 35 3 0 243 0 1 70 0 4 172 0 1 18 1 0 167 9 6 16 4 0 33 12 11 16 9 8 43 1 0 4 3 0 13 18 13 6 3 0 19 24 17 29 4 1 11 37 23 20 6 4 30 chain 43842 chrX 156040895 + 124517323 124517817 L1PA5 6144 + 5645 6138 32223 246 1 0 247 chain 555157 chrX 156040895 + 124582570 124588702 L1PA3long 6157 + 24 6157 398 226 2 4 1062 0 1 4276 1 0 295 11 10 259 chain 41610 chrX 156040895 + 124596898 124597686 L1PB1 5432 + 4691 5430 33618 106 3 2 12 1 0 33 8 9 34 0 1 107 2 1 99 21 19 24 1 0 4 5 4 12 5 1 9 4 2 50 16 16 43 10 9 8 3 0 15 24 1 14 3 1 5 1 0 14 2 0 24 1 0 23 1 0 11 1 0 7 5 3 12 1 0 4 chain 60690 chrX 156040895 + 124597694 124598843 L1MA2 4263 + 3228 4218 26179 356 5 2 4 1 0 71 2 1 85 0 1 5 5 6 37 13 10 40 20 13 54 1 0 6 0 1 35 12 10 44 1 0 49 7 0 47 1 0 9 4 2 11 3 1 14 175 46 16 4 2 12 chain 101065 chrX 156040895 + 124760519 124761700 L1PA6 6164 + 4979 6161 18178 65 1 0 271 1 0 47 0 2 225 0 2 562 1 0 8 chain 3431 chrX 156040895 + 124847114 124847160 MER103C 291 + 118 163 95812 38 1 0 7 chain 12870 chrX 156040895 + 124854218 124854499 L1PB1 5432 + 5169 5430 65306 51 2 1 16 1 0 42 2 1 16 2 0 6 61 51 17 1 0 23 1 0 11 1 0 13 1 0 8 1 0 5 chain 271938 chrX 156040895 + 124864862 124868824 L1MA1 4479 + 239 4190 7661 11 0 7 9 12 5 8 2 0 254 0 4 131 1 2 147 0 1 70 0 1 93 0 4 76 0 2 62 2 8 41 0 1 56 2 0 70 0 1 52 10 11 303 1 0 14 1 2 26 0 1 105 12 0 10 0 12 95 0 1 127 18 6 42 0 1 6 0 3 6 0 3 17 0 12 100 8 10 20 4 3 144 0 7 67 1 2 5 1 0 86 1 0 65 2 1 39 0 1 63 6 4 29 1 0 62 75 74 18 1 0 26 13 11 136 0 2 25 2 0 17 4 0 41 0 1 32 9 8 6 4 0 78 2 1 47 3 0 124 1 0 56 0 1 111 0 1 33 1 0 24 2 0 12 5 4 71 1 0 19 2 0 14 1 0 83 15 10 126 1 0 28 12 10 26 1 0 9 1 0 11 4 2 8 7 0 18 chain 59737 chrX 156040895 + 124970630 124971298 L1PA5 6144 + 5478 6142 26450 657 4 0 7 chain 25871 chrX 156040895 + 124973776 124974092 L1PA7 6471 + 6128 6463 47910 185 1 0 20 0 13 32 0 7 78 chain 9120 chrX 156040895 + 124981871 124981969 L1HS 6032 + 5934 6032 72303 98 chain 432171 chrX 156040895 + 125006291 125012349 L1PA8 5853 + 108 5852 4718 121 1 0 5 20 21 27 1 4 10 24 12 14 0 11 42 1 2 249 39 31 298 0 1 202 30 24 25 4 0 6 18 22 180 2 0 137 0 5 502 23 22 461 6 7 365 21 19 181 2 0 5 0 2 108 0 3 673 0 6 429 309 4 500 0 1 132 8 6 11 3 0 13 0 2 71 3 0 391 0 3 90 1 0 44 2 0 71 1 0 10 1 0 51 2 1 19 1 0 92 chain 51689 chrX 156040895 + 125017378 125018024 L1PA7 6471 + 5816 6466 28964 320 0 1 6 8 9 25 0 1 127 4 5 156 chain 103611 chrX 156040895 + 125043046 125044166 L1PA2 6032 + 4900 6021 17862 289 0 1 831 chain 159346 chrX 156040895 + 125050854 125064320 L1PA4 6152 + 4145 6152 11787 203 0 4 77 2 0 114 0 3 838 11467 0 140 0 2 459 0 1 166 chain 6403 chrX 156040895 + 125063278 125063361 HSMAR2 1300 + 62 145 79662 83 chain 3142 chrX 156040895 + 125069613 125069651 L1PA8 5853 + 5702 5740 98447 38 chain 9057 chrX 156040895 + 125069653 125069766 L1PA8 5853 + 5741 5853 72425 19 1 0 93 chain 328620 chrX 156040895 + 125113445 125117700 L1PA7 6471 + 2487 6459 6239 145 0 2 67 4 6 719 0 21 50 1 0 75 0 4 108 9 7 673 0 2 278 0 1 303 7 1 244 0 4 33 0 3 45 1 2 322 0 4 8 1 0 97 0 3 84 312 0 256 8 0 405 chain 7780 chrX 156040895 + 125151740 125151873 MER20 218 + 53 199 75416 27 30 43 76 chain 3939 chrX 156040895 + 125215143 125215185 L1PA6 6164 + 6117 6159 91838 42 chain 122857 chrX 156040895 + 125255464 125256877 LTR12C 1709 + 0 1709 15046 569 0 13 68 0 278 184 1 0 4 5 3 95 10 14 36 0 4 441 chain 20000 chrX 156040895 + 125265355 125265676 THE1B 368 + 5 355 56385 13 1 2 11 9 24 12 0 1 100 5 4 22 1 5 96 15 24 36 chain 25564 chrX 156040895 + 125267263 125267609 THE1B 368 + 0 368 48381 44 0 15 117 1 0 130 8 16 46 chain 9652 chrX 156040895 + 125269976 125270091 THE1C-int 1605 + 1484 1599 71156 115 chain 43491 chrX 156040895 + 125335967 125336515 MLT2A2 560 + 0 560 32459 206 0 1 200 0 11 142 chain 9150 chrX 156040895 + 125348396 125348524 MER85 139 + 0 139 72233 88 4 15 36 chain 14823 chrX 156040895 + 125351423 125351713 L1M1 2793 + 729 1003 62491 11 2 0 4 2 0 13 21 17 28 1 0 29 14 11 51 3 1 8 1 0 25 1 0 76 chain 276603 chrX 156040895 + 125445246 125449298 L1PA10 4194 + 253 4161 7535 18 12 8 7 1 0 8 53 30 11 2 0 21 1 0 6 2 1 11 8 6 15 16 10 72 0 1 6 2 0 44 7 8 65 0 1 156 1 0 403 0 1 139 0 18 5 18 0 395 0 1 53 6 5 96 12 15 333 0 4 160 3 0 216 0 1 25 41 42 61 0 10 34 0 4 541 84 0 232 7 15 86 55 0 32 6 7 73 3 4 130 0 3 180 23 29 5 3 0 30 3 1 14 chain 69522 chrX 156040895 + 125466667 125467666 MER11A 1151 + 0 1151 24116 62 0 106 28 2 0 32 1 0 66 0 11 23 35 0 204 0 12 138 2 5 15 3 4 37 0 4 69 0 2 16 1 59 101 5 4 63 4 0 24 9 8 19 1 0 39 chain 49429 chrX 156040895 + 125492959 125493549 LTR10C 591 + 0 591 29793 205 1 0 299 4 6 81 chain 9769 chrX 156040895 + 125508814 125508938 MER44B 551 + 337 461 70890 124 chain 392031 chrX 156040895 + 125536762 125542211 L1PB1 5432 + 57 5274 5291 145 0 3 70 1 2 108 5 6 251 3 1 221 9 11 69 0 10 274 2 4 86 11 0 86 8 7 170 0 1 85 5 8 35 6 1 180 1 11 24 0 2 572 19 6 166 4 5 166 14 13 880 9 1 34 0 1 116 1 0 157 0 1 575 3 0 11 0 1 30 0 7 15 7 10 108 2 3 39 0 1 132 0 18 107 245 2 9 3 0 20 1 0 13 1 0 5 10 6 9 2 0 52 1 0 18 1 0 37 chain 25564 chrX 156040895 + 125555043 125555336 L1PA4 6152 + 5847 6140 48379 293 chain 220746 chrX 156040895 + 125656945 125659429 L1PA5 6144 + 3649 6144 9022 324 2 3 503 0 1 107 0 1 69 0 3 48 0 1 280 0 1 281 0 4 19 1 0 89 0 1 547 1 0 213 chain 3560 chrX 156040895 + 125662981 125663032 MADE1 96 + 29 96 94752 13 1 17 37 chain 20745 chrX 156040895 + 125683069 125683332 L1PB1 5432 + 3470 3734 55440 12 0 1 251 chain 19831 chrX 156040895 + 125683337 125683588 L1PB1 5432 + 3734 3985 56633 251 chain 23934 chrX 156040895 + 125683590 125683964 L1PB1 5432 + 3986 4353 50891 106 10 7 16 21 31 19 13 0 104 7 6 78 chain 26894 chrX 156040895 + 125683989 125684407 L1PB1 5432 + 4806 5215 46416 190 0 1 106 1 2 9 3 0 24 1 0 5 2 1 12 28 22 37 chain 7654 chrX 156040895 + 125684425 125684622 L1PB1 5432 + 5237 5414 75740 44 1 0 7 77 61 21 1 0 21 1 0 13 1 0 10 chain 51384 chrX 156040895 + 125688432 125689082 PABL_B 668 + 0 651 29082 277 2 1 68 6 5 86 0 3 211 chain 9065 chrX 156040895 + 125720796 125720934 L1M1 2793 + 2547 2685 72408 35 4 6 40 1 0 45 1 0 12 chain 51588 chrX 156040895 + 125721733 125722412 THE1B-int 1605 + 928 1597 28997 33 1 2 490 6 7 78 18 6 53 chain 25333 chrX 156040895 + 125722425 125722777 THE1B 368 + 5 368 48738 35 0 15 105 13 12 21 2 0 101 1 0 74 chain 4305 chrX 156040895 + 125758272 125758372 LTR25 836 + 498 563 89463 46 41 6 13 chain 94830 chrX 156040895 + 125761546 125762665 L1PA6 6164 + 5035 6160 18932 280 2 6 12 0 2 825 chain 76629 chrX 156040895 + 125779510 125780478 LTR5_Hs 974 + 0 974 22410 289 0 1 179 0 1 186 1 0 163 8 15 19 20 18 103 chain 9118 chrX 156040895 + 125780932 125781056 MER85 139 + 4 138 72306 85 1 11 38 chain 170006 chrX 156040895 + 125789718 125791612 L1PA5 6144 + 4250 6143 11105 1752 1 0 141 chain 31996 chrX 156040895 + 125812436 125812866 MLT2A1 477 + 0 463 40347 140 1 2 26 2 6 211 3 31 47 chain 45363 chrX 156040895 + 125828483 125829043 MLT2A2 560 + 0 560 31387 560 chain 557578 chrX 156040895 + 125838860 125845012 L1PA3long 6157 + 4 6157 267 703 1 0 2039 0 1 990 1 2 216 1 0 1468 0 1 733 chain 15017 chrX 156040895 + 125882407 125882727 THE1C 375 + 0 336 62249 14 2 0 33 42 51 74 55 64 100 chain 15472 chrX 156040895 + 125943794 125943957 L1HS 6032 + 5869 6032 61697 163 chain 12494 chrX 156040895 + 126000565 126000734 THE1A 353 + 185 353 65994 25 9 8 135 chain 110878 chrX 156040895 + 126021404 126022679 L1PA5 6144 + 4864 6144 16955 429 0 5 683 18 18 145 chain 32181 chrX 156040895 + 126034942 126035368 MLT2A1 477 + 0 417 40206 138 0 1 29 1 5 221 1 0 4 11 0 14 2 0 5 chain 419603 chrX 156040895 + 126035908 126042552 HERVL-int 5654 + 0 5654 4881 210 0 3 663 0 1 4 6 12 197 3 4 617 6 0 62 5 0 92 12 11 392 1 2 306 0 1 72 0 1 790 11 9 241 20 280 401 0 2 138 1262 3 214 15 0 10 1 22 11 6 0 23 26 24 7 0 6 746 0 3 74 chain 30962 chrX 156040895 + 126041048 126041402 L1PA7 6471 + 6105 6459 41159 354 chain 31002 chrX 156040895 + 126042552 126042975 MLT2A1 477 + 0 477 41121 59 1 0 80 1 2 28 1 5 90 8 9 110 1 0 2 0 50 42 chain 9210 chrX 156040895 + 126139935 126140039 L1PA8A 6298 + 6186 6290 72103 104 chain 127641 chrX 156040895 + 126154441 126155864 L1P1 4361 + 1598 3021 14336 1423 chain 49984 chrX 156040895 + 126179172 126179720 L1PA3long 6157 + 5609 6157 29567 548 chain 117628 chrX 156040895 + 126193381 126194703 L1PA4 6152 + 4817 6143 15952 487 0 4 835 chain 30490 chrX 156040895 + 126225522 126225940 MSTA 426 + 3 426 41584 201 1 0 4 6 8 9 0 6 5 2 0 190 chain 159946 chrX 156040895 + 126226683 126228712 HERVL-int 5654 + 3644 5645 11758 406 0 1 378 0 1 634 9 7 155 36 7 360 0 1 51 chain 32010 chrX 156040895 + 126228721 126229175 MLT2A1 477 + 1 477 40337 168 4 1 9 1 2 22 0 1 176 8 28 29 4 3 27 0 4 6 chain 42241 chrX 156040895 + 126241441 126241919 L1PA5 6144 + 5666 6144 33221 478 chain 105718 chrX 156040895 + 126287591 126288733 L1PA2 6032 + 4763 5905 17595 1142 chain 48394 chrX 156040895 + 126347086 126347631 L1PA4 6152 + 5594 6146 30152 397 5 12 143 chain 158457 chrX 156040895 + 126356937 126359585 L1PA7 6471 + 4492 6462 11843 82 1 0 4 0 1 54 2 1 77 8 3 234 1 2 124 5 6 517 0 2 15 0 2 22 1 2 72 0 3 192 681 0 232 1 0 323 chain 46290 chrX 156040895 + 126358368 126358913 L1PA7 6471 + 5923 6470 30925 208 0 1 165 1 2 171 chain 34117 chrX 156040895 + 126363908 126364327 L1PA8A 6298 + 5873 6292 38624 82 0 1 50 1 0 160 1 0 6 0 1 119 chain 5434 chrX 156040895 + 126373442 126373521 MADE1 96 + 0 96 83532 23 2 1 7 0 18 47 chain 435362 chrX 156040895 + 126383150 126388173 L1PA4 6152 + 3 5049 4660 1158 0 3 658 1 0 452 2 1 6 0 1 617 1 2 98 1 0 517 1 0 262 0 1 704 0 1 152 0 5 314 1 16 78 chain 52626 chrX 156040895 + 126413484 126414091 L1PA7 6471 + 5688 6295 28693 607 chain 14247 chrX 156040895 + 126414096 126414256 L1PA7 6471 + 6309 6469 63273 160 chain 61854 chrX 156040895 + 126437128 126437818 L1PA2 6032 + 5358 6032 25903 338 1 0 328 15 0 8 chain 72780 chrX 156040895 + 126452216 126453225 THE1B-int 1605 + 13 1077 23363 414 4 29 217 25 24 84 37 38 217 0 30 11 chain 458247 chrX 156040895 + 126459945 126465109 L1PA4 6152 + 3 5975 4173 577 1 0 142 0 808 3848 1 0 50 0 2 545 chain 145099 chrX 156040895 + 126523719 126525363 L1PA5 6144 + 4500 6144 12680 128 1 0 666 1 0 608 0 2 240 chain 3437 chrX 156040895 + 126530067 126530108 L1MA9 1812 + 1282 1323 95761 41 chain 8692 chrX 156040895 + 126542960 126543067 MER85 139 + 5 122 73232 85 0 10 22 chain 39229 chrX 156040895 + 126547832 126548261 L1PA4 6152 + 5462 5891 35192 429 chain 23233 chrX 156040895 + 126548261 126548521 L1PA4 6152 + 5892 6152 52031 260 chain 36651 chrX 156040895 + 126554872 126555403 MER51A 677 + 0 658 36983 60 17 18 76 3 2 20 0 135 50 5 6 149 1 0 75 8 0 67 chain 32193 chrX 156040895 + 126565483 126565853 L1PA5 6144 + 5434 5805 40194 37 1 2 332 chain 27991 chrX 156040895 + 126565853 126566184 L1PA5 6144 + 5806 6137 44879 190 0 1 6 1 0 134 chain 27786 chrX 156040895 + 126567377 126567703 L1PA7 6471 + 6134 6461 45199 186 0 1 140 chain 17507 chrX 156040895 + 126615912 126616127 L1PA5 6144 + 5929 6144 59236 215 chain 108189 chrX 156040895 + 126640733 126641971 SVA_D 2077 + 8 1699 17293 29 0 5 22 0 1 401 0 76 353 13 55 10 0 1 30 0 229 9 0 1 73 0 98 298 chain 35537 chrX 156040895 + 126641985 126642368 L1PA3long 6157 + 5774 6157 37691 383 chain 333233 chrX 156040895 + 126671284 126677666 L1PA11 4918 + 13 4567 6164 31 2 0 27 10 8 36 1 0 13 8 6 47 2 1 32 2 0 4 2 1 57 12 4 45 6 7 76 1 2 87 9 5 178 12 9 61 4 3 85 0 4 272 0 1 89 0 1 150 11 7 443 3 0 44 1793 9 403 0 4 153 1 0 296 4 0 55 0 2 182 4 5 103 0 3 602 11 9 399 1 0 186 5 4 30 0 2 17 0 4 14 5 0 62 2 1 80 2 0 14 1 0 17 9 0 12 31 22 5 0 3 7 1 0 13 chain 111933 chrX 156040895 + 126673235 126674937 SVA_A 1864 + 13 1864 16823 34 5 0 46 0 11 69 6 4 473 3 0 70 3 0 27 43 7 9 5 0 33 3 0 37 3 0 16 31 25 18 25 14 16 31 21 11 62 126 11 3 0 51 2 149 27 3 0 27 13 29 473 0 4 13 chain 10058 chrX 156040895 + 126779651 126779907 L1PB1 5432 + 5178 5411 70285 38 23 21 43 1 0 16 1 0 6 17 6 19 28 23 20 1 0 20 5 4 10 1 0 7 chain 105611 chrX 156040895 + 126783307 126784877 THE1C-int 1605 + 2 1594 17608 14 9 10 94 1 55 43 0 1 103 11 19 102 87 43 193 1 0 19 0 1 42 3 12 252 6 7 110 8 14 22 30 18 229 2 1 178 2 1 9 chain 92820 chrX 156040895 + 126803638 126805349 L1PA5 6144 + 4759 6144 19211 189 617 290 56 1 0 30 0 1 488 0 1 330 chain 18405 chrX 156040895 + 126839508 126839720 AluSg4 309 + 35 247 58235 212 chain 199018 chrX 156040895 + 126849304 126851553 L1PA5 6144 + 3886 6140 9744 1459 0 5 790 chain 29302 chrX 156040895 + 126863046 126863509 LTR7 482 + 0 482 42890 69 29 17 15 15 14 109 8 9 33 8 40 4 1 0 172 chain 303611 chrX 156040895 + 126863511 126867324 HERVH-int 3825 + 0 3825 6753 90 8 0 8 0 8 227 1 0 200 1 0 12 72 59 14 1 0 13 29 25 35 7 6 82 1 0 84 10 9 907 0 1 38 8 9 169 4 8 82 10 15 131 0 1 68 0 1 570 6 7 196 10 29 494 0 2 225 chain 31165 chrX 156040895 + 126868580 126868992 LTR7 482 + 0 482 41009 69 8 46 109 8 40 218 chain 10008 chrX 156040895 + 126885756 126885872 L1P2 5180 + 1846 1962 70407 116 chain 9278 chrX 156040895 + 126938522 126938634 MLT2A1 477 + 273 385 71956 112 chain 499294 chrX 156040895 + 126946790 126952887 L1PA5 6144 + 1 6142 3155 112 7 21 382 0 1 435 25 0 217 9 0 247 0 1 10 1 0 347 0 1 538 34 3 33 0 93 721 0 1 339 1 2 1152 6 7 1315 10 11 145 4 0 7 chain 12630 chrX 156040895 + 126955314 126955450 L1PA2 6032 + 5895 6031 65753 136 chain 16038 chrX 156040895 + 126960714 126960931 L1PA8 5853 + 5639 5852 60979 37 4 3 10 1 0 51 2 1 19 1 0 92 chain 57200 chrX 156040895 + 126961990 126963572 MER4E 760 + 0 760 27196 23 0 1 130 1 2 13 6 7 85 0 2 9 2 1 90 1 3 81 519 0 82 309 0 5 1 0 155 0 1 70 chain 45877 chrX 156040895 + 126962437 126962950 MER9a2 513 + 0 513 31115 513 chain 58334 chrX 156040895 + 126969156 126970092 L1PA11 4918 + 3729 4629 26856 245 0 6 6 6 0 217 0 1 10 0 3 111 5 0 10 2 0 50 7 6 78 2 0 16 1 0 13 50 38 15 1 0 13 21 13 5 1 0 8 1 0 5 19 13 18 chain 46120 chrX 156040895 + 126985453 126986069 PABL_A 660 + 0 652 31004 118 20 6 49 0 39 272 1 10 25 1 0 109 0 3 21 chain 66909 chrX 156040895 + 126988728 126989646 PABL_A-int 1935 + 98 1012 24719 7 2 0 33 10 8 150 1 0 113 14 16 274 2 1 185 0 1 102 1 0 24 chain 47044 chrX 156040895 + 126991347 126991991 PABL_A 660 + 0 660 30638 45 13 0 83 14 0 8 0 2 35 0 39 294 1 4 9 1 0 141 chain 40817 chrX 156040895 + 126994529 126995090 MLT2A2 560 + 0 560 34083 237 30 22 140 3 14 122 5 1 24 chain 2822 chrX 156040895 + 127058332 127058364 MLT2B1 522 + 483 515 101512 32 chain 480644 chrX 156040895 + 127102249 127108037 L1PA6 6164 + 0 6162 3618 324 0 10 426 2 1 285 0 338 408 10 11 31 5 0 469 0 1 28 0 2 79 1 17 341 0 1 4 2 1 405 2 3 245 0 1 274 3 0 614 1 0 123 0 1 206 1 0 669 9 14 776 2 1 6 0 10 37 chain 63827 chrX 156040895 + 127142296 127143033 L1PA7 6471 + 5732 6469 25448 737 chain 45953 chrX 156040895 + 127189763 127190332 L1PA7 6471 + 5896 6464 31076 298 2 1 140 6 7 110 1 0 12 chain 211240 chrX 156040895 + 127201872 127204265 L1PA5 6144 + 3314 5714 9312 515 2 1 233 0 1 563 0 1 512 0 2 155 0 4 413 chain 59151 chrX 156040895 + 127210805 127211586 MER4E1 777 + 0 777 26620 17 5 0 83 8 11 426 19 12 26 0 5 197 chain 462150 chrX 156040895 + 127214730 127219892 L1PA3long 6157 + 982 6147 4072 2087 0 1 92 1 3 1577 1 0 155 0 1 1249 chain 42577 chrX 156040895 + 127225962 127226437 L1P1 4361 + 3855 4328 33018 296 1 0 154 1 0 23 chain 225406 chrX 156040895 + 127228072 127230835 HERVH-int 3825 + 1073 3825 8875 156 16 1 199 9 0 4 1 0 139 5 0 39 1 0 168 0 1 220 0 4 86 0 5 97 0 1 41 0 2 61 0 1 1110 36 37 282 0 5 93 chain 23373 chrX 156040895 + 127232629 127232994 LTR7 482 + 0 451 51810 87 0 50 87 5 37 26 11 12 5 0 1 60 1 2 52 13 14 18 chain 56990 chrX 156040895 + 127264874 127265506 L1PA4 6152 + 4715 5347 27268 632 chain 337764 chrX 156040895 + 127278585 127284584 L1PB1 5432 + 580 5417 6113 92 653 57 20 5 1 7 0 5 13 9 11 243 0 1 196 0 2 73 2 1 92 25 17 97 0 2 18 6 4 170 0 1 646 0 1 127 1 0 10 8 5 26 10 11 120 0 2 38 4 5 59 313 70 19 3 0 665 5 9 17 0 1 39 360 25 107 0 31 226 0 1 365 0 2 298 0 4 71 0 2 50 0 1 49 0 2 296 1 2 9 1 0 24 3 2 6 1 0 12 5 1 8 2 0 39 20 19 11 1 0 44 1 0 16 3 0 6 16 6 19 7 4 15 2 0 17 8 7 21 1 0 13 1 0 13 chain 23950 chrX 156040895 + 127281355 127281661 L1PA7 6471 + 6159 6464 50866 114 5 4 187 chain 22562 chrX 156040895 + 127298770 127299160 L1PA13 3608 + 3131 3488 53024 29 1 0 114 3 1 61 1 0 20 4 0 23 10 7 10 2 0 26 20 5 16 2 0 5 2 0 18 1 0 22 chain 98506 chrX 156040895 + 127331671 127332755 L1PA3long 6157 + 5054 6139 18481 769 0 1 315 chain 85955 chrX 156040895 + 127353936 127354944 LTR5A 1029 + 0 1029 20451 26 3 5 103 0 13 732 0 6 144 chain 561774 chrX 156040895 + 127362223 127368248 L1HS 6032 + 1 6032 141 6009 0 6 16 chain 68156 chrX 156040895 + 127394636 127395503 LTR12 884 + 0 884 24417 55 0 41 244 1 2 36 2 0 13 23 0 493 chain 473040 chrX 156040895 + 127395531 127401275 HERV9-int 5642 + 0 5642 3786 283 11 14 130 3 5 166 7 5 110 0 4 78 1 0 232 80 0 76 1 0 267 0 10 1448 0 1 238 1 0 2164 1 0 226 10 8 32 3 1 9 4 3 14 2 1 60 1 0 13 37 14 10 4 0 3 2 0 17 chain 5085 chrX 156040895 + 127417793 127417849 L1PA8 5853 + 5797 5853 85223 56 chain 397289 chrX 156040895 + 127473414 127478868 L1PB1 5432 + 39 5424 5191 317 28 0 8 5 4 9 0 6 20 1 0 9 0 1 460 1 2 234 9 11 275 45 25 125 0 4 142 0 5 304 5 2 349 0 2 141 4 0 12 0 1 11 0 2 90 4 9 6 5 0 281 74 69 38 0 1 14 0 1 637 0 1 29 0 1 24 0 6 204 0 1 235 0 4 312 27 32 113 3 0 170 22 23 102 1 0 4 0 1 171 36 19 20 1 0 8 1 0 12 4 0 9 2 0 53 2 1 16 1 0 44 1 0 10 29 17 19 9 6 13 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 71979 chrX 156040895 + 127485118 127485904 L1PA3long 6157 + 3734 4520 23545 786 chain 8316 chrX 156040895 + 127510958 127511093 ERVL-int 1947 + 213 345 74121 72 22 19 41 chain 128329 chrX 156040895 + 127586029 127587453 L1PA3long 6157 + 4732 6157 14242 1413 0 1 11 chain 47390 chrX 156040895 + 127590671 127591200 L1PA4 6152 + 5619 6152 30508 206 1 0 316 0 5 6 chain 102160 chrX 156040895 + 127593706 127594820 L1PA3long 6157 + 3832 4947 18044 114 0 1 1000 chain 63546 chrX 156040895 + 127605285 127606102 HERVL-int 5654 + 0 829 25515 120 5 10 115 18 14 277 0 5 48 3 5 143 0 4 88 chain 240008 chrX 156040895 + 127610848 127613491 L1PA3long 6157 + 3506 6154 8474 469 0 1 1331 0 5 770 1 0 72 chain 145965 chrX 156040895 + 127625932 127627554 L1PA4 6152 + 4215 5835 12619 420 2 0 1200 chain 12721 chrX 156040895 + 127722449 127722606 THE1D-int 1627 + 1447 1604 65578 157 chain 81047 chrX 156040895 + 127775855 127776920 MER11A 1151 + 15 1151 21428 65 0 8 55 0 5 79 1 5 62 0 11 377 6 9 12 1 2 40 0 4 113 3 0 24 0 35 44 0 1 32 10 9 80 1 0 24 0 4 36 chain 468050 chrX 156040895 + 127788799 127794289 L1PA4 6152 + 3 5520 3908 119 5 19 93 10 7 17 1 2 202 0 1 593 8 9 133 17 20 541 0 1 236 0 4 30 2 1 397 0 3 259 0 1 492 1 0 24 1 0 482 2 0 1298 0 2 312 1 5 214 chain 268835 chrX 156040895 + 127800865 127803832 L1PA2 6032 + 3060 6026 7739 1845 2 1 1120 chain 7124 chrX 156040895 + 127822030 127822334 L1PB1 5432 + 5114 5422 77180 24 1 0 4 38 31 20 95 115 14 13 10 14 2 0 24 1 0 22 1 0 12 7 6 12 chain 60321 chrX 156040895 + 127843154 127843817 L1PA3long 6157 + 4722 5385 26289 663 chain 15487 chrX 156040895 + 127863739 127863907 L1PA2 6032 + 5861 6029 61673 168 chain 70842 chrX 156040895 + 127889420 127890216 L1PA4 6152 + 5355 6152 23794 683 0 1 113 chain 29448 chrX 156040895 + 127905551 127905931 MLT2A1 477 + 0 385 42673 142 0 1 26 6 10 206 chain 32427 chrX 156040895 + 127917727 127918183 LTR2 463 + 0 463 40015 136 20 25 103 0 1 104 24 26 12 1 0 56 chain 5302 chrX 156040895 + 127946336 127946400 LTR26E 604 + 17 81 84190 64 chain 20952 chrX 156040895 + 128035030 128035895 L1M1 2793 + 536 1224 55188 4 1 0 14 2 0 8 3 0 8 1 0 9 1 0 12 3 0 7 370 282 11 7 5 5 1 0 98 103 27 20 1 0 56 0 1 33 4 6 39 1 0 43 chain 9157 chrX 156040895 + 128118762 128118875 LTR8 732 + 66 179 72215 113 chain 3429 chrX 156040895 + 128122784 128122820 U1 164 + 0 36 95823 36 chain 150326 chrX 156040895 + 128136144 128137790 L1PA3long 6157 + 4508 6154 12325 1079 0 1 252 1 0 314 chain 380966 chrX 156040895 + 128148491 128153780 L1PA8 5853 + 562 5836 5463 76 103 104 14 2 3 5 1 0 382 0 3 5 2 0 298 9 7 530 6 7 30 2 0 747 15 13 83 1 2 15 9 10 38 17 21 144 1 5 83 24 17 10 9 0 6 3 0 84 11 12 161 0 2 237 0 1 227 6 0 74 0 1 445 22 0 336 20 23 64 2 14 108 2 0 231 0 4 121 0 1 198 10 9 35 2 0 50 5 4 17 1 0 8 5 6 47 2 1 19 1 0 15 0 8 53 chain 324860 chrX 156040895 + 128178659 128183184 L1PA11 4918 + 2 4504 6312 8 1 0 5 1 0 27 2 0 30 19 16 27 1 0 13 2 0 14 0 1 37 5 4 29 9 6 54 6 7 67 22 27 86 1 0 525 0 1 56 2 1 211 0 1 40 0 4 50 2 0 190 8 9 198 0 1 5 1 0 59 3 0 136 2 5 95 1 0 180 13 24 7 11 0 38 0 2 26 6 7 4 1 0 293 1 0 83 3 4 363 1 2 212 15 24 203 0 2 489 1 0 321 11 6 47 59 36 56 2 0 11 2 1 16 chain 130692 chrX 156040895 + 128188656 128190418 L1PBa 3878 + 597 2359 13956 27 1 0 202 21 23 89 0 1 30 0 5 441 1 2 188 10 13 480 14 0 243 0 3 15 chain 477637 chrX 156040895 + 128198946 128204452 L1PA5 6144 + 3 5510 3681 3161 1 0 877 0 1 135 0 1 1092 0 2 11 6 4 223 chain 58896 chrX 156040895 + 128207638 128208352 LTR30 714 + 0 714 26697 275 2 1 173 8 9 256 chain 33291 chrX 156040895 + 128210602 128211042 LTR30 714 + 0 443 39270 225 1 0 28 0 5 11 8 7 120 0 1 4 3 2 40 chain 15969 chrX 156040895 + 128211049 128211294 LTR30 714 + 461 704 61067 171 35 34 25 1 0 13 chain 139538 chrX 156040895 + 128212333 128215090 L1PB1 5432 + 3100 5392 13134 50 9 0 135 29 20 13 1 0 217 41 44 157 11 6 211 29 20 221 0 1 143 0 5 280 4 0 6 43 19 162 5 0 209 4 1 31 11 13 15 577 189 12 6 5 11 24 12 18 25 20 24 1 0 22 chain 32618 chrX 156040895 + 128216728 128217104 L1PA7 6471 + 6093 6470 39848 155 0 1 221 chain 104596 chrX 156040895 + 128315581 128317118 L1PB1 5432 + 3937 5420 17745 47 1 2 6 1 0 629 0 1 181 2 1 175 0 2 109 41 18 6 4 0 20 1 0 12 1 0 10 20 14 50 0 2 15 1 0 24 1 0 4 0 1 11 8 7 12 3 0 6 18 8 17 2 0 5 1 0 14 3 1 23 1 0 21 1 0 13 4 3 13 chain 126154 chrX 156040895 + 128350549 128352339 L1PA7 6471 + 4682 6466 14529 107 8 0 194 0 2 231 1 2 67 0 1 335 2 0 16 0 11 15 11 1 45 0 1 300 0 2 41 16 14 241 10 11 136 3 0 11 chain 57087 chrX 156040895 + 128376736 128377358 L1PA5 6144 + 4549 5170 27239 276 1 0 345 chain 82138 chrX 156040895 + 128377390 128378336 L1PA5 6144 + 5171 6128 21215 123 0 1 172 0 1 342 1 2 298 0 8 10 chain 149071 chrX 156040895 + 128390882 128392672 L1PA8 5853 + 4071 5853 12411 194 1 0 69 4 0 501 0 1 175 0 2 551 1 0 45 2 0 69 16 14 7 0 1 40 2 1 19 1 0 93 chain 25899 chrX 156040895 + 128415581 128415945 MLT2A1 477 + 0 372 47872 44 4 6 89 6 7 22 1 5 22 8 9 168 chain 455802 chrX 156040895 + 128416092 128421742 HERVL-int 5654 + 27 5654 4241 30 13 13 34 2 1 372 0 1 85 0 1 40 0 1 265 0 5 1053 57 5 82 0 1 64 0 9 250 0 1 85 0 4 86 1 12 80 37 19 213 0 1 122 1 4 97 15 18 271 0 3 1012 0 4 89 0 1 140 11 6 757 0 3 67 0 1 219 chain 29404 chrX 156040895 + 128421742 128422216 MLT2A1 477 + 0 477 42730 48 0 2 88 0 1 29 1 5 28 3 4 146 35 49 10 14 0 10 7 0 17 1 3 37 chain 8823 chrX 156040895 + 128422239 128422421 L1PB1 5432 + 5242 5404 72942 39 1 0 15 3 0 16 10 1 13 9 6 14 2 0 24 1 0 22 1 0 12 chain 120422 chrX 156040895 + 128479969 128481404 L1PA7 6471 + 5026 6467 15457 596 2 0 51 0 1 168 0 1 69 0 6 389 1 4 6 3 0 150 chain 23626 chrX 156040895 + 128490534 128490814 AluSp 311 + 14 294 51388 280 chain 4689 chrX 156040895 + 128552967 128553240 L1MA6 2487 + 2339 2484 87332 40 200 73 8 1 0 24 chain 48215 chrX 156040895 + 128554164 128554922 L1PA13 3608 + 2759 3488 30212 191 15 16 85 9 8 98 7 6 110 2 0 62 1 0 14 0 1 41 1 0 5 2 0 25 17 6 12 20 9 19 1 0 21 chain 31323 chrX 156040895 + 128563983 128564398 L1PBa 3878 + 1976 2398 40872 83 0 1 248 17 24 27 6 5 34 chain 118136 chrX 156040895 + 128575096 128576412 L1PA4 6152 + 4828 6146 15864 479 0 1 730 0 1 107 chain 95175 chrX 156040895 + 128606431 128607817 LTR12C 1709 + 0 1709 18883 24 51 60 207 12 13 23 1 0 50 0 1 36 6 7 43 9 1 8 14 0 52 0 1 226 0 366 90 24 0 16 14 7 39 0 3 26 5 2 240 1 0 86 1 0 82 chain 20594 chrX 156040895 + 128609143 128609422 AluSc 308 + 1 302 55646 58 16 0 94 0 31 14 0 7 97 chain 13635 chrX 156040895 + 128648723 128648899 L1PB1 5432 + 4824 5002 64111 28 1 3 147 chain 77416 chrX 156040895 + 128703922 128704836 L1PA7 6471 + 5548 6467 22215 72 2 1 35 0 6 805 chain 19862 chrX 156040895 + 128715830 128716116 L1PA8 5853 + 5573 5853 56592 25 12 10 70 2 1 14 1 0 47 2 1 19 1 0 93 chain 556048 chrX 156040895 + 128732738 128738890 L1PA3long 6157 + 0 6155 355 5310 0 4 696 1 0 145 chain 55340 chrX 156040895 + 128757773 128758444 L1PA8 5853 + 5189 5853 27765 375 1 0 46 2 0 69 1 0 9 1 0 52 2 1 19 1 0 93 chain 3184 chrX 156040895 + 128765885 128765955 MER77B 728 + 310 381 98039 36 22 23 12 chain 544527 chrX 156040895 + 128782655 128788670 L1PA3long 6157 + 0 6156 1053 152 0 1 373 4 0 250 0 128 109 0 6 192 0 5 3144 0 4 344 0 1 1447 chain 72836 chrX 156040895 + 128791506 128792342 L1PA7 6471 + 5626 6465 23348 463 0 1 47 0 2 326 chain 304348 chrX 156040895 + 128792354 128796715 L1PA8 5853 + 1748 5853 6731 158 0 7 112 5 7 48 0 1 125 0 1 106 0 1 456 0 1 105 0 1 15 276 4 23 0 1 9 0 4 111 0 2 155 0 1 12 16 0 61 9 13 20 2 3 6 1 0 52 33 18 146 0 1 155 0 11 652 8 14 359 13 13 271 0 7 54 14 16 169 0 1 308 9 8 36 2 0 70 25 23 26 17 16 17 2 1 92 chain 83452 chrX 156040895 + 128831733 128832826 MER11A 1151 + 0 1151 20923 54 1 100 50 0 1 4 1 0 85 4 0 94 0 1 232 23 0 63 0 1 150 41 24 112 0 1 179 chain 78085 chrX 156040895 + 128853300 128854343 MER11C 1089 + 0 1059 22076 240 9 18 59 0 4 65 1 0 177 16 15 112 1 5 4 1 0 38 1 2 124 0 1 56 1 0 117 0 1 21 chain 46958 chrX 156040895 + 128917885 128918394 L1PA2 6032 + 5521 6030 30675 509 chain 31871 chrX 156040895 + 128918402 128918773 L1PA5 6144 + 5761 6134 40438 360 0 2 11 chain 24455 chrX 156040895 + 128927933 128928214 AluSp 311 + 4 285 50098 281 chain 27693 chrX 156040895 + 128930759 128931113 THE1B 368 + 0 368 45325 40 0 15 117 2 1 5 0 1 114 1 0 75 chain 71347 chrX 156040895 + 128978232 128980096 L1PB1 5432 + 4270 5430 23684 39 0 1 67 10 10 84 1 5 152 7 8 23 5 1 137 8 9 255 726 52 25 0 3 5 5 0 6 20 17 51 2 1 16 8 7 36 1 0 16 1 0 9 21 7 14 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 18 1 0 4 1 0 4 chain 33677 chrX 156040895 + 128980128 128980643 L1MA2 4263 + 3604 4103 38948 58 12 11 116 20 17 51 1 0 99 11 9 93 7 0 15 2 0 30 chain 124238 chrX 156040895 + 128985338 128986869 THE1B-int 1605 + 0 1605 14806 432 11 38 141 0 8 125 0 39 822 chain 132455 chrX 156040895 + 129001679 129003181 L1PA5 6144 + 4632 6135 13786 339 1 0 99 0 1 183 0 1 39 1 0 7 0 1 833 chain 173748 chrX 156040895 + 129022589 129024633 L1PA7 6471 + 4424 6461 10912 772 1 0 425 1 0 77 0 2 542 6 0 9 1 0 210 chain 529892 chrX 156040895 + 129044337 129050401 L1PA2 6032 + 121 6032 1831 33 1 0 102 1 0 521 129 1 280 12 15 209 0 1 154 24 0 923 1 0 3204 0 1 462 3 0 5 chain 33436 chrX 156040895 + 129050494 129050864 L1PA3long 6157 + 5774 6144 39145 370 chain 4357 chrX 156040895 + 129057146 129057300 MER58A 224 + 45 195 89130 38 89 85 27 chain 5345 chrX 156040895 + 129067168 129067247 L1MB1 2102 + 1372 1445 83974 44 6 0 29 chain 81497 chrX 156040895 + 129084993 129085884 L1PA3long 6157 + 5258 6149 21332 891 chain 9773 chrX 156040895 + 129085893 129086014 LTR49 580 + 224 346 70873 74 0 1 47 chain 55860 chrX 156040895 + 129088933 129089981 L1MA5A 2387 + 19 2289 27604 16 67 50 22 23 17 20 7 6 6 6 0 25 21 17 4 1 0 38 6 5 33 0 1 111 8 9 26 9 0 233 0 1287 88 1 0 75 1 0 52 2 0 27 21 11 10 5 9 15 14 0 16 0 2 39 chain 146073 chrX 156040895 + 129166844 129168435 L1PA3long 6157 + 4570 6157 12607 1581 4 0 6 chain 455460 chrX 156040895 + 129240861 129246036 L1PA4 6152 + 6 5186 4246 1074 0 3 626 0 1 107 0 1 1697 0 1 1143 1 0 527 chain 26114 chrX 156040895 + 129285552 129286223 L1PA8 5853 + 5505 5853 47549 59 1 0 45 2 0 68 3 2 12 1 0 49 2 1 19 318 2 7 1 0 84 chain 339655 chrX 156040895 + 129290194 129294090 L1PA5 6144 + 2241 6142 6080 689 1 2 226 1 0 48 7 5 773 0 3 1027 1 0 273 0 1 517 0 1 53 0 3 280 chain 80767 chrX 156040895 + 129294363 129295695 L1MA2 4263 + 1970 4113 21478 159 145 0 194 1 0 4 1 2 108 0 978 127 2 0 38 8 7 37 10 12 27 1 0 130 19 13 150 2 1 9 2 1 55 4 8 13 8 0 15 7 0 47 1 0 8 chain 26594 chrX 156040895 + 129335425 129335790 THE1C-int 1605 + 0 429 46845 18 1 0 21 6 5 54 2 68 263 chain 502479 chrX 156040895 + 129337055 129342645 L1PA3long 6157 + 12 5734 3043 58 0 1 82 0 1 622 0 128 1422 1 0 3031 0 3 374 chain 25167 chrX 156040895 + 129343117 129343445 L1M1 2793 + 1500 1826 49009 158 4 0 4 0 1 8 5 4 44 0 2 105 chain 430309 chrX 156040895 + 129352209 129357113 L1PA5 6144 + 385 5295 4744 648 0 1 1722 0 1 450 1 0 295 0 2 840 0 4 670 1 0 277 chain 34597 chrX 156040895 + 129369865 129370300 MLT2A1 477 + 0 477 38290 83 0 1 85 4 1 9 0 1 24 0 1 178 0 2 12 3 43 37 chain 60140 chrX 156040895 + 129375513 129376227 L1PA8A 6298 + 4815 5534 26334 582 0 5 132 chain 43136 chrX 156040895 + 129388197 129388678 L1PA3long 6157 + 1369 1850 32692 481 chain 311820 chrX 156040895 + 129388678 129392124 L1PA3long 6157 + 1854 5357 6575 836 0 1 1691 0 56 919 chain 73517 chrX 156040895 + 129392124 129392921 L1PA3long 6157 + 5360 6157 23215 797 chain 81780 chrX 156040895 + 129405405 129406330 L1PA3long 6157 + 3184 4114 21284 71 0 1 464 0 3 223 0 1 167 chain 186727 chrX 156040895 + 129406330 129408371 L1PA3long 6157 + 4115 6156 10264 2041 chain 179167 chrX 156040895 + 129453354 129455614 L1PA7 6471 + 4372 6466 10622 27 6 0 123 0 2 144 0 4 920 0 4 25 3 0 31 163 0 49 1 0 407 2 1 22 0 1 182 1 0 145 2 0 7 chain 22994 chrX 156040895 + 129474737 129475100 THE1B 368 + 0 368 52369 165 17 16 20 20 25 40 7 8 32 1 0 4 1 2 56 chain 72117 chrX 156040895 + 129481551 129482349 L1PA2 6032 + 5238 6032 23507 191 0 1 589 2 0 7 3 0 6 chain 2779 chrX 156040895 + 129495679 129495711 MER6A 605 + 487 519 101768 32 chain 11011 chrX 156040895 + 129526640 129526843 MER30B 195 + 0 195 68545 69 41 31 10 10 12 73 chain 26744 chrX 156040895 + 129563751 129564038 L1PA3long 6157 + 5023 5310 46625 287 chain 76592 chrX 156040895 + 129564038 129564873 L1PA3long 6157 + 5314 6157 22418 824 0 8 11 chain 3540 chrX 156040895 + 129571940 129571980 MER3 215 + 0 40 94936 40 chain 3348 chrX 156040895 + 129672867 129672906 MLT2B1 522 + 483 522 96620 39 chain 2450 chrX 156040895 + 129716620 129716670 MER51A 677 + 366 416 103911 50 chain 4655 chrX 156040895 + 129811713 129811769 7SK 245 + 0 56 87502 56 chain 52841 chrX 156040895 + 129821949 129822615 L1PA8 5853 + 5190 5853 28627 374 1 0 45 2 0 66 9 8 10 1 0 5 3 7 35 2 1 19 2 1 92 chain 5801 chrX 156040895 + 129828269 129828340 MER51E 476 + 304 375 81918 71 chain 177310 chrX 156040895 + 129849750 129851969 SVA_D 2077 + 0 2061 10710 14 0 3 903 1 0 27 91 1 86 10 12 211 0 1 4 10 37 83 0 8 11 9 0 80 99 0 580 chain 6651 chrX 156040895 + 129850695 129850786 SVA_D 2077 + 985 1049 35445 5 1 0 40 1 0 6 35 10 3 chain 2993 chrX 156040895 + 129850748 129850783 SVA_D 2077 + 1264 1299 40959 35 chain 4981 chrX 156040895 + 129851296 129851389 SVA_D 2077 + 1036 1129 54039 93 chain 9357 chrX 156040895 + 129863331 129863436 AluSp 311 + 37 142 71792 105 chain 19096 chrX 156040895 + 129866420 129866643 L1PA8A 6298 + 5919 6142 57448 223 chain 70995 chrX 156040895 + 129872870 129874395 MER41-int 2638 + 1663 2622 23761 5 1 0 14 1 0 39 0 3 76 0 10 56 316 9 58 275 0 102 0 2 58 2 0 7 2 0 319 0 6 127 1 2 66 chain 14657 chrX 156040895 + 129877654 129877849 MER30 238 + 26 237 62727 81 4 0 10 1 21 99 chain 27477 chrX 156040895 + 129888362 129888750 THE1D 372 + 0 372 45605 75 19 0 84 0 3 25 7 6 63 0 2 76 1 0 38 chain 3349 chrX 156040895 + 129892322 129892365 L1MEf 1413 + 947 990 96605 43 chain 3451 chrX 156040895 + 129901321 129901363 MamRep1879 211 + 82 124 95648 42 chain 2679 chrX 156040895 + 130198377 130198414 MADE1 96 - 59 96 102451 37 chain 54164 chrX 156040895 + 130252732 130253500 L1PA13 3608 + 2687 3448 28165 349 0 1 84 8 7 31 1 0 96 20 18 9 0 1 51 1 0 57 8 6 46 2 0 5 chain 1622 chrX 156040895 + 130277184 130277364 MER51A 677 + 2 323 42147 136 0 6 32 0 135 12 chain 125852 chrX 156040895 + 130277735 130279420 HERVH-int 3825 + 0 1956 14578 322 23 22 66 27 146 7 0 1 6 1 0 10 1 0 18 0 150 30 1 0 448 15 0 62 1 2 140 9 0 22 0 2 189 1 0 42 3 30 241 chain 2712 chrX 156040895 + 130280200 130280501 MER51A 677 + 333 661 42147 60 1 31 11 0 1 6 6 12 58 2 1 76 8 0 66 1 0 6 chain 32655 chrX 156040895 + 130287373 130287858 MER51A 677 + 0 661 39802 8 0 3 165 3 0 24 12 1 27 4 197 18 0 2 67 2 1 20 0 1 53 10 2 72 chain 17046 chrX 156040895 + 130302416 130302638 L1PA8 5853 + 5632 5850 59758 50 1 0 5 2 1 52 2 1 19 1 0 90 chain 12579 chrX 156040895 + 130306193 130306334 L1PA6 6164 + 6021 6162 65829 141 chain 68594 chrX 156040895 + 130319083 130319891 THE1B-int 1605 + 798 1605 24312 780 2 0 9 0 1 17 chain 24705 chrX 156040895 + 130319891 130320235 THE1B 368 + 0 368 49726 42 1 16 103 0 2 6 3 0 63 1 0 10 0 4 60 5 13 12 1 0 37 chain 91735 chrX 156040895 + 130387829 130388894 L1PA7 6471 + 5396 6464 19379 77 0 5 136 0 3 645 3 0 36 1 0 13 1 0 153 chain 9034 chrX 156040895 + 130441219 130441323 LTR71B 605 + 501 605 72488 104 chain 115762 chrX 156040895 + 130477402 130478677 L1PA3long 6157 + 4877 6152 16279 1275 chain 31065 chrX 156040895 + 130478688 130479075 L1PA7 6471 + 6086 6467 41080 153 3 2 65 0 1 8 2 0 146 4 0 6 chain 566042 chrX 156040895 + 130517377 130523407 L1HS 6032 + 2 6032 63 6030 chain 17781 chrX 156040895 + 130533436 130533798 MER83 447 + 83 447 58918 107 14 8 87 3 4 21 93 100 37 chain 15630 chrX 156040895 + 130535346 130535688 MER83A-int 427 + 100 420 61496 26 57 46 27 3 0 43 0 1 32 18 17 50 7 4 8 1 0 15 4 0 51 chain 17968 chrX 156040895 + 130618545 130618826 MER47A 366 + 111 366 58686 21 32 0 58 3 5 20 0 4 147 chain 7290 chrX 156040895 + 130648656 130648767 MSTB1 431 + 71 197 76694 65 4 0 6 5 8 17 0 16 14 chain 4550 chrX 156040895 + 130678102 130678153 MSTC 436 + 385 436 88059 51 chain 2868 chrX 156040895 + 130731436 130731469 L1MD 993 + 741 774 101077 33 chain 3099 chrX 156040895 + 130740824 130740861 MIRb 242 + 8 45 98793 37 chain 43096 chrX 156040895 + 130798987 130799537 MLT2A2 560 + 0 560 32716 379 1 0 24 1 12 145 chain 532396 chrX 156040895 + 130813453 130819873 L1PA7 6471 + 0 6470 1736 247 0 2 151 0 3 125 0 4 563 0 4 6 5 1 319 0 1 135 1 0 183 0 1 65 1 0 292 0 2 34 1 0 4 0 1 377 0 2 112 21 0 462 0 4 228 0 1 155 3 2 13 4 0 111 1 2 598 0 2 458 0 8 77 0 10 213 0 1 406 0 26 205 2 0 381 0 1 320 10 22 126 1 0 4 chain 47508 chrX 156040895 + 130821185 130821702 L1PA2 6032 + 5513 6030 30478 517 chain 29022 chrX 156040895 + 130822470 130822788 L1PA4 6152 + 5834 6152 43288 318 chain 127042 chrX 156040895 + 130872585 130874042 L1PA7 6471 + 4999 6458 14414 615 0 2 842 chain 14617 chrX 156040895 + 130924250 130924404 L1PA2 6032 + 5873 6027 62779 154 chain 20100 chrX 156040895 + 130941018 130941240 L1PA7 6471 + 6243 6465 56256 222 chain 559086 chrX 156040895 + 130958931 130964957 L1PA2 6032 + 0 6031 200 573 0 4 1984 0 1 3469 chain 8601 chrX 156040895 + 130988649 130988798 L1PA16 3655 + 3491 3618 73453 86 2 0 12 29 9 20 chain 9643 chrX 156040895 + 130990310 130990526 L1MA7 2200 + 1849 2046 71179 63 13 14 23 2 0 28 56 38 31 chain 110870 chrX 156040895 + 131005313 131006504 L1HS 6032 + 4825 6016 16956 1191 chain 15148 chrX 156040895 + 131038197 131038363 L1PA2 6032 + 5866 6032 62098 166 chain 121720 chrX 156040895 + 131142028 131144333 L1PB1 5432 + 3609 5430 15225 15 1 2 101 2 5 229 0 1 150 1 2 514 10 7 21 1 5 37 0 1 4 8 5 83 9 7 185 0 1 77 176 48 6 3 0 20 1 0 8 2 1 12 2 0 3 2 0 9 3 1 51 2 1 15 1 0 42 370 32 16 3 1 5 1 0 14 3 1 45 1 0 10 1 0 13 2 1 10 1 0 4 chain 25710 chrX 156040895 + 131151685 131151968 L1PA3long 6157 + 5861 6144 48152 283 chain 18266 chrX 156040895 + 131241093 131241356 L1PA8 5853 + 5587 5845 58395 23 2 0 68 2 1 11 1 0 4 0 1 45 2 1 19 1 0 85 chain 80193 chrX 156040895 + 131327299 131328225 SVA_D 2077 + 737 2072 21590 31 2 82 17 0 82 44 1 0 22 1 60 155 0 176 35 1 4 284 0 10 333 chain 14106 chrX 156040895 + 131411272 131411494 MER41B 635 + 325 549 63444 40 15 18 83 9 8 75 chain 536351 chrX 156040895 + 131427989 131434414 L1PA7 6471 + 15 6470 1546 22 0 7 366 0 2 1149 1 0 239 0 2 352 9 10 236 1 18 102 0 2 119 5 1 855 1 0 24 0 1 5 1 0 73 4 6 7 2 0 7 1 2 1184 0 4 193 10 1 58 0 3 221 0 1 336 4 9 61 1 0 5 0 2 380 0 1 379 2 0 10 chain 444183 chrX 156040895 + 131461602 131467116 L1PA5 6144 + 0 5953 4492 273 0 1 427 0 1 426 0 1 1308 0 83 565 0 1 90 1 0 84 0 2 16 3 1 403 0 1 250 0 1 373 364 715 759 0 1 97 1 0 74 chain 11846 chrX 156040895 + 131483541 131483729 THE1B 368 + 175 368 67122 23 40 45 125 chain 296041 chrX 156040895 + 131483759 131490202 L1PB1 5432 + 1404 5422 6951 42 9 10 119 0 2 33 0 1 154 7 1 201 3 0 415 0 1 107 1 3 93 10 13 243 1 0 38 0 1 124 4 3 542 8 1 121 1 2 59 0 4 136 2343 0 89 6 5 14 0 5 6 3 0 250 0 3 281 1 10 69 1 5 16 2 0 216 0 1 4 1 0 51 4 6 194 82 16 24 1 0 4 53 46 32 2 1 15 1 0 45 1 0 15 24 12 19 24 19 24 1 0 21 1 0 13 1 0 18 chain 153539 chrX 156040895 + 131486837 131488544 L1PA3long 6157 + 4456 6157 12142 758 2 1 935 5 0 7 chain 182659 chrX 156040895 + 131503357 131505329 L1PA2 6032 + 4060 6032 10460 1972 chain 32757 chrX 156040895 + 131506878 131507273 L1PA8A 6298 + 5896 6290 39709 283 6 5 106 chain 24573 chrX 156040895 + 131519862 131520205 THE1A 353 + 0 341 49895 71 1 2 37 1 0 65 7 6 21 1 0 139 chain 126549 chrX 156040895 + 131520217 131521792 THE1A-int 1579 + 0 1579 14471 311 5 6 90 6 5 86 1 0 132 7 8 357 1 0 284 0 3 6 3 0 150 0 5 136 chain 536337 chrX 156040895 + 131524490 131530619 L1PA5 6144 + 3 6134 1547 1216 0 1 6 1 0 208 0 2 4698 chain 41880 chrX 156040895 + 131533785 131534463 L1MA2 4263 + 3419 4105 33437 96 11 12 39 1 0 18 10 6 72 1 0 52 0 3 29 0 2 44 17 14 56 1 0 96 25 20 57 19 36 34 chain 493546 chrX 156040895 + 131552691 131558190 L1PA3long 6157 + 4 6157 3324 778 0 2 266 6 2 1099 0 1 67 1 2 1106 0 1 896 0 649 437 0 4 843 chain 13561 chrX 156040895 + 131561519 131561778 L1PA8 5853 + 5591 5853 64235 17 2 0 70 2 1 9 1 2 10 4 2 34 6 5 12 33 41 59 chain 4030 chrX 156040895 + 131578431 131578482 Tigger3c 601 + 485 538 91245 37 0 2 14 chain 545615 chrX 156040895 + 131578680 131584735 L1PA2 6032 + 3 6030 990 1600 40 0 122 0 5 938 0 2 1262 2 0 364 0 17 673 7 0 190 0 4 76 1 0 610 5 0 8 1 0 156 chain 258070 chrX 156040895 + 131655928 131659146 L1P3 4156 + 0 3265 8021 243 35 35 15 1 2 25 5 4 78 9 0 320 0 17 79 26 62 425 0 7 166 0 2 525 0 1 26 1 0 597 0 1 62 7 0 573 chain 554553 chrX 156040895 + 131663952 131669984 L1PA2 6032 + 0 6027 443 3049 1 0 883 2 0 2087 2 0 8 chain 17139 chrX 156040895 + 131671420 131671639 L1PA8 5853 + 5637 5852 59655 45 1 0 7 1 0 51 2 1 19 2 1 91 chain 12550 chrX 156040895 + 131681746 131681922 MLT2A2 560 + 371 558 65901 13 1 0 16 4 15 72 0 1 70 chain 32948 chrX 156040895 + 131712024 131712446 LTR7 482 + 0 482 39552 69 8 46 131 0 21 22 0 1 192 chain 292174 chrX 156040895 + 131712448 131716106 HERVH-int 3825 + 0 3825 7066 333 1 0 200 1 0 37 2 1 9 1 0 10 4 0 13 7 1 14 1 0 13 26 21 4 1 0 27 2 0 13 2 1 23 21 0 59 0 1 4 2 0 647 9 0 27 0 2 10 1 0 309 0 1 312 0 5 973 9 11 39 8 218 199 3 4 54 3 5 225 chain 31415 chrX 156040895 + 131717354 131717764 LTR7 482 + 0 482 40801 69 8 46 143 0 32 94 1 3 95 chain 30192 chrX 156040895 + 131764769 131765236 MER11C 1089 + 631 1073 41860 33 37 0 26 7 9 38 0 1 32 5 13 82 0 1 54 10 9 135 0 1 8 chain 24631 chrX 156040895 + 131812096 131812394 AluSp 311 + 0 294 49825 125 0 3 3 7 0 163 chain 86102 chrX 156040895 + 131875397 131876351 L1PA5 6144 + 5176 6131 20414 147 0 1 807 chain 29247 chrX 156040895 + 131883013 131883325 AluYa5 310 + 0 310 42968 126 2 0 184 chain 49186 chrX 156040895 + 131922224 131923030 L1MA3 4352 + 3404 4186 29871 9 1 0 29 1 4 104 3 2 64 4 0 277 6 8 147 111 89 43 1 0 6 chain 298455 chrX 156040895 + 131923068 131927129 L1PBa1 4058 + 11 4045 6875 24 2 1 9 6 4 6 1 0 175 1 2 204 0 4 89 2 15 22 1 0 52 15 14 26 4 1 276 0 15 102 0 4 183 1 0 26 0 1 217 0 1 89 3 20 68 2 1 638 0 1 147 39 24 199 1 0 71 0 5 13 24 0 7 2 0 82 2 1 585 1 0 112 2 0 113 15 13 28 1 0 41 2 0 108 3 1 22 1 0 7 6 0 15 2 0 16 17 12 18 1 0 12 12 9 5 1 0 5 1 0 9 1 0 17 1 0 40 3 0 7 chain 31122 chrX 156040895 + 131949840 131950226 MLT2A1 477 + 0 383 41041 168 5 2 213 chain 77410 chrX 156040895 + 131950333 131951578 HERVL-int 5654 + 0 987 22219 56 6 7 134 280 22 35 7 6 727 chain 10520 chrX 156040895 + 131952213 131952338 L1PB 1623 + 530 655 69378 125 chain 287262 chrX 156040895 + 131963413 131966609 L1PA3long 6157 + 2960 6157 7219 213 1 0 10 0 1 2055 0 1 917 chain 521081 chrX 156040895 + 131989491 131995649 L1PA6 6164 + 0 6162 2223 144 6 7 220 1 9 30 13 13 532 2 1 231 7 0 1169 0 2 17 0 1 331 0 1 18 17 17 442 2 0 4 0 1 508 4 0 382 0 1 4 6 5 755 0 2 446 0 4 859 2 0 6 chain 8316 chrX 156040895 + 132006076 132006176 MER5A 189 + 26 126 74119 100 chain 76198 chrX 156040895 + 132009866 132010744 L1PA5 6144 + 5266 6144 22512 215 2 1 369 0 1 292 chain 52767 chrX 156040895 + 132011204 132011771 L1PA2 6032 + 5461 6028 28651 567 chain 3232 chrX 156040895 + 132014284 132014337 MER53 195 + 141 195 97648 26 5 6 22 chain 44427 chrX 156040895 + 132105405 132106102 L1PA14 3548 + 2821 3484 31871 99 25 22 11 2 0 47 2 0 5 2 0 105 27 21 6 1 0 84 1 0 110 1 0 12 5 1 35 4 2 12 1 0 5 1 0 16 1 0 41 6 0 10 1 0 19 chain 532529 chrX 156040895 + 132132810 132138750 L1PA3long 6157 + 46 6150 1729 105 3 4 544 1 8 61 8 136 639 0 11 431 5 22 1184 1 0 322 0 1 2636 chain 18747 chrX 156040895 + 132148735 132148939 L1PA2 6032 + 5824 6028 57848 204 chain 120139 chrX 156040895 + 132162575 132164164 THE1B-int 1605 + 0 1600 15517 284 4 5 12 1 0 131 40 50 107 1 0 158 0 1 686 9 10 156 chain 22881 chrX 156040895 + 132164169 132164541 THE1B 368 + 0 368 52534 15 18 16 16 0 1 63 0 3 6 2 0 41 39 32 54 0 4 42 1 0 75 chain 4423 chrX 156040895 + 132194819 132194926 LTR12C 1709 + 654 712 88774 49 49 0 9 chain 39277 chrX 156040895 + 132197011 132197436 L1PA2 6032 + 5608 6032 35164 88 1 0 336 chain 16850 chrX 156040895 + 132253108 132253387 L1PA16 3655 + 3366 3619 59973 44 1 2 166 52 25 16 chain 10106 chrX 156040895 + 132265957 132266113 MER1B 344 + 201 344 70187 15 4 0 61 1 0 4 13 5 58 chain 145920 chrX 156040895 + 132317805 132319947 L1PA4 6152 + 3386 5521 12621 326 7 0 1809 chain 315995 chrX 156040895 + 132323746 132327491 L1PA7 6471 + 2700 6459 6482 189 0 4 1097 0 1 487 5 15 1128 1 0 838 chain 12073 chrX 156040895 + 132400101 132400232 L1PA3long 6157 + 6026 6157 66712 131 chain 4190 chrX 156040895 + 132413304 132413381 MER53 195 - 15 87 90192 5 2 0 36 9 6 25 chain 4304 chrX 156040895 + 132438089 132438174 Tigger4 2445 + 2317 2396 89478 43 6 2 10 3 2 5 1 0 17 chain 3509 chrX 156040895 + 132571886 132571932 MLT2A2 560 + 506 550 95178 7 2 0 37 chain 22370 chrX 156040895 + 132605962 132606248 L1PA7 6471 + 6184 6468 53311 123 0 7 8 7 0 137 2 0 9 chain 4222 chrX 156040895 + 132657739 132657819 MADE1 96 + 0 96 89989 46 11 27 23 chain 29133 chrX 156040895 + 132720517 132720910 L1M1 2793 + 2315 2695 43147 113 7 5 10 2 0 103 6 0 82 1 0 43 1 0 14 1 0 10 chain 74533 chrX 156040895 + 132722216 132723843 L1MA2 4263 + 1364 2441 22949 5 0 2 22 1 2 96 605 48 27 2 0 208 0 1 174 0 4 17 1 0 110 8 9 4 1 0 122 6 8 218 chain 31922 chrX 156040895 + 132838782 132839267 L1PB4 2604 + 1890 2377 40392 8 0 5 5 1 0 38 0 2 130 2 0 6 4 1 105 7 5 40 5 6 45 14 16 75 chain 350137 chrX 156040895 + 132867642 132871937 L1PA7 6471 + 2161 6466 5909 111 5 6 33 1 2 323 8 9 55 0 1 188 6 10 620 13 12 79 8 10 193 0 4 13 0 10 1335 0 1 69 1 2 140 0 1 95 1 2 12 3 1 27 11 0 77 0 4 15 1 0 151 1 0 80 5 0 284 0 1 176 1 0 136 1 0 17 chain 50224 chrX 156040895 + 132883545 132884237 LTR62 707 + 0 697 29475 136 9 13 145 1 3 16 9 7 213 4 5 159 chain 5324 chrX 156040895 + 132890385 132890465 MADE1 96 + 0 96 84076 29 0 16 51 chain 228323 chrX 156040895 + 132943415 132946764 L1PA5 6144 + 3539 6131 8793 5 2 0 129 0 1 666 1 5 130 1 3 1333 762 0 320 chain 19320 chrX 156040895 + 132945774 132945994 L1PA5 6144 + 5908 6128 57219 220 chain 35279 chrX 156040895 + 132946034 132946444 L1PA5 6144 + 5396 5810 37841 288 1 5 121 chain 3838 chrX 156040895 + 132972426 132972477 MER3 215 + 84 142 92576 41 0 7 10 chain 16260 chrX 156040895 + 132985991 132986197 MSTB 430 + 224 429 60663 90 1 0 115 chain 18697 chrX 156040895 + 133007201 133007583 MSTA 426 + 14 426 57902 30 0 4 30 17 0 7 6 28 31 8 15 12 1 0 17 2 0 6 16 12 11 8 13 8 3 0 9 1 0 49 12 32 98 chain 541334 chrX 156040895 + 133009673 133015816 L1PA4 6152 + 12 6136 1249 232 0 1 70 2 1 260 1 0 70 20 13 8 0 7 162 17 0 408 1 0 1166 1 0 1271 1 0 7 1 3 2445 chain 126831 chrX 156040895 + 133044194 133045850 LTR12C 1709 + 0 1709 14433 428 0 1 35 5 2 352 0 40 197 16 63 99 42 11 393 5 4 84 chain 452895 chrX 156040895 + 133062169 133067887 L1PA8 5853 + 108 5852 4308 193 19 7 291 0 4 59 4 1 7 0 1 12 0 28 24 18 19 31 0 3 149 5 6 264 4 0 6 0 4 808 0 1 459 3 7 195 2 0 219 2 3 216 2 1 318 1 3 65 0 1 262 0 1 263 0 1 195 0 1 326 8 9 153 1 0 285 2 0 482 1 2 71 1 0 37 0 1 6 2 0 52 36 0 8 1 36 36 2 1 19 1 0 92 chain 9273 chrX 156040895 + 133078127 133078298 MSTB 430 + 218 390 71967 97 47 48 27 chain 14485 chrX 156040895 + 133106322 133106498 Tigger3a 397 + 198 374 62911 176 chain 460413 chrX 156040895 + 133111380 133116528 L1PA3long 6157 + 1007 6156 4118 22 0 1 4277 1 0 515 1 2 332 chain 31654 chrX 156040895 + 133121578 133122010 MER83 447 + 0 437 40619 143 16 15 88 5 11 180 chain 467573 chrX 156040895 + 133159872 133166582 L1PA7 6471 + 819 6453 3920 433 0 19 675 0 4 41 0 2 258 0 3 377 38 16 48 0 1 807 2 0 702 0 1 279 0 1 475 0 1 552 1076 1 19 10 0 87 2 0 132 0 3 697 chain 10510 chrX 156040895 + 133206496 133206702 MER30 238 + 0 230 69402 17 14 23 27 32 52 8 4 0 67 1 0 36 chain 15334 chrX 156040895 + 133250046 133250280 MER30 238 + 0 238 61867 30 4 0 76 31 33 13 0 6 80 chain 25782 chrX 156040895 + 133277261 133277617 THE1B 368 + 0 366 48047 198 35 45 123 chain 533534 chrX 156040895 + 133278697 133285121 L1PA7 6471 + 3 6469 1678 400 0 3 35 0 21 124 0 38 1009 0 1 123 3 0 875 15 0 529 0 1 210 7 9 9 0 1 106 2 0 25 10 0 8 7 1 18 0 4 30 0 3 339 0 1 599 0 4 142 0 4 946 1 0 26 3 4 59 1 0 421 1 0 328 3 0 10 chain 3128 chrX 156040895 + 133366897 133366957 MER51A 677 + 203 308 98559 31 13 58 16 chain 9947 chrX 156040895 + 133400018 133400146 MER101 471 + 345 471 70535 20 2 0 106 chain 2847 chrX 156040895 + 133421099 133421129 MER51A 677 + 201 231 101264 30 chain 10939 chrX 156040895 + 133540188 133540339 L1PB2 3958 + 3690 3838 68635 64 2 0 20 2 1 63 chain 26314 chrX 156040895 + 133548664 133549020 THE1B 368 + 0 368 47249 44 7 22 106 2 1 133 3 1 61 chain 41706 chrX 156040895 + 133554418 133554950 LTR10A 586 + 23 586 33547 36 0 8 7 5 6 23 0 21 17 1 0 65 0 1 73 2 3 303 chain 22543 chrX 156040895 + 133601796 133602144 L1MA5 2750 + 2316 2661 53052 12 0 1 208 1 0 25 1 0 37 18 18 14 8 7 8 1 0 15 chain 3602 chrX 156040895 + 133615467 133615505 L1PA7 6471 + 6172 6210 94410 38 chain 21638 chrX 156040895 + 133615505 133615764 L1PA7 6471 + 6211 6470 54303 259 chain 36559 chrX 156040895 + 133620495 133621084 MER4B 649 + 0 641 37037 30 1 0 24 18 16 13 1 0 28 1 2 32 4 0 12 0 42 18 22 23 105 8 23 117 5 8 69 1 0 71 1 0 8 chain 511461 chrX 156040895 + 133621186 133627141 L1PA5 6144 + 0 5961 2689 135 1 15 1019 9 0 117 14 2 127 0 5 252 0 8 259 1 0 162 0 1 296 2 3 394 0 1 392 1 0 321 1 0 166 4 0 801 0 2 715 1 2 41 3 4 54 1 0 557 0 1 109 chain 43817 chrX 156040895 + 133714950 133715494 MLT2A2 560 + 0 553 32240 205 1 0 106 1 0 88 3 14 140 chain 40515 chrX 156040895 + 133717309 133717772 LTR2 463 + 0 463 34302 463 chain 10598 chrX 156040895 + 133719525 133719641 L1PA2 6032 + 5916 6032 69231 116 chain 40840 chrX 156040895 + 133719701 133720284 L1PB2 3958 + 3206 3808 34069 101 2 0 50 1 4 13 4 0 57 9 7 13 4 0 17 0 5 65 1 0 79 1 0 47 4 15 36 0 15 44 2 1 33 chain 28357 chrX 156040895 + 133720284 133720640 THE1B 368 + 0 368 44333 44 0 15 110 1 0 24 2 0 175 chain 8364 chrX 156040895 + 133737059 133737346 L1MC1 2226 + 1914 2179 73984 45 19 25 10 2 0 41 84 70 16 1 0 7 10 1 10 1 0 10 5 4 26 chain 117340 chrX 156040895 + 133743803 133745155 L1PA7 6471 + 5100 6454 15991 447 0 1 775 0 1 130 chain 64952 chrX 156040895 + 133762285 133764219 L1PA16 3655 + 2663 3538 25199 11 1 0 171 1 2 55 1 0 4 0 4 11 1 0 70 2 0 84 1056 0 125 7 6 84 3 1 247 chain 3061 chrX 156040895 + 133842454 133842491 MLT2A1 477 + 441 477 99215 17 1 0 19 chain 8835 chrX 156040895 + 133887579 133887699 MER85 139 + 0 131 72906 96 3 14 21 chain 3349 chrX 156040895 + 133973313 133973351 MIRb 242 + 94 132 96603 38 chain 5814 chrX 156040895 + 133995524 133995607 L1MB1 2102 + 1926 2007 81853 13 3 1 67 chain 8089 chrX 156040895 + 134064680 134064787 MLT1A1 405 + 299 405 74662 94 1 0 12 chain 522148 chrX 156040895 + 134079494 134085603 L1PA5 6144 + 0 6144 2174 120 32 58 991 9 0 962 0 1 61 0 4 116 4 1 848 1 2 6 1 0 257 0 1 355 0 2 170 0 1 32 0 1 353 0 8 95 0 3 1696 chain 4732 chrX 156040895 + 134102369 134102422 MLT1B-int 1170 + 156 209 87072 53 chain 31914 chrX 156040895 + 134103833 134104282 L1PA8 5853 + 5417 5853 40398 8 0 2 59 8 0 78 2 1 43 2 0 70 2 1 14 16 15 35 1 0 17 1 0 93 chain 487159 chrX 156040895 + 134117179 134122695 L1PA4 6152 + 0 5518 3490 512 4 5 218 0 1 303 0 1 22 0 2 3635 6 5 180 2 0 634 chain 23982 chrX 156040895 + 134135908 134136284 MSTA 426 + 0 426 50819 63 5 4 32 28 57 58 7 12 11 3 0 59 1 21 109 chain 3608 chrX 156040895 + 134148988 134149060 L2a 937 + 15 81 94346 12 20 14 40 chain 93876 chrX 156040895 + 134193212 134194275 L1PA6 6164 + 5099 6161 19060 209 0 1 688 1 0 155 1 0 9 chain 39999 chrX 156040895 + 134282800 134283336 MER1A 529 + 0 529 34659 279 4 0 172 23 20 58 chain 279335 chrX 156040895 + 134301193 134305436 L1MA1 4479 + 227 4163 7438 18 0 4 30 2 0 421 0 4 81 1 9 49 2 4 42 1 0 94 0 5 10 5 11 200 0 1 225 11 17 45 0 1 103 0 1 76 1 0 412 3 1 281 2 4 33 27 38 62 10 12 47 0 1 33 1 0 65 2 1 103 2 0 33 1 0 60 3 2 92 1 0 23 0 13 94 0 7 63 2 0 93 1 0 12 5 0 53 341 29 26 6 7 5 1 0 6 3 0 128 4 2 11 4 5 180 1 0 24 2 0 56 0 1 30 1 0 20 2 0 13 1 0 69 0 1 5 1 0 13 1 0 5 3 0 13 0 1 35 0 8 27 37 0 31 11 10 30 2 0 16 1 0 19 1 0 10 1 0 11 chain 49722 chrX 156040895 + 134308881 134309451 L1P1 4361 + 3758 4326 29674 392 1 0 155 1 0 21 chain 152301 chrX 156040895 + 134309787 134311544 L1PA6 6164 + 4398 6160 12210 280 2 1 236 6 7 392 1 5 426 0 1 414 chain 43707 chrX 156040895 + 134326364 134326888 L1PA7 6471 + 5944 6468 32318 81 5 6 290 1 2 136 2 0 9 chain 168425 chrX 156040895 + 134328656 134330497 L1PA3long 6157 + 4309 6149 11196 998 1 0 842 chain 22968 chrX 156040895 + 134337876 134338163 AluSg4 309 + 10 293 52414 31 9 5 247 chain 15437 chrX 156040895 + 134351702 134351898 Tigger3c 601 + 334 540 61740 31 0 10 165 chain 20142 chrX 156040895 + 134423886 134424121 L1PA5 6144 + 5909 6143 56200 217 1 0 17 chain 5420 chrX 156040895 + 134466547 134466627 MLT1A 405 + 305 389 83604 44 8 12 28 chain 3047 chrX 156040895 + 134486971 134487003 MIR 256 + 79 111 99336 32 chain 13063 chrX 156040895 + 134533585 134533746 LTR8 732 + 571 732 64998 161 chain 3734 chrX 156040895 + 134563131 134563213 MIRb 242 + 98 179 93364 31 29 28 22 chain 28311 chrX 156040895 + 134592330 134593114 MLT2D 439 + 0 439 44395 63 29 26 100 0 2 160 14 0 17 353 23 48 chain 30336 chrX 156040895 + 134649799 134650346 MER39 703 + 37 703 41725 42 12 0 11 5 14 31 19 66 13 51 120 97 11 8 30 1 3 18 0 8 110 2 0 18 0 1 76 chain 40692 chrX 156040895 + 134702031 134702650 L1PA16 3655 + 3032 3619 34149 41 1 0 128 1 0 16 7 4 38 1 0 5 1 2 13 2 0 5 0 2 5 2 0 126 5 4 111 1 0 45 3 0 15 19 0 12 2 1 14 chain 4905 chrX 156040895 + 134719025 134719083 L1MB5 1630 + 1410 1468 86133 58 chain 145013 chrX 156040895 + 134838679 134840373 SVA_D 2077 + 20 2077 12691 623 0 39 135 40 0 100 1 0 26 45 5 50 0 403 141 1 0 179 0 3 353 chain 3894 chrX 156040895 + 134861701 134861746 MADE1 96 + 51 96 92181 45 chain 2938 chrX 156040895 + 134884315 134884372 L1MC1 2226 + 2129 2184 100514 6 1 0 17 10 9 23 chain 14497 chrX 156040895 + 134926099 134926523 LTR12C 1709 + 773 1542 62897 21 0 2 41 1 0 32 10 51 49 0 41 27 199 461 44 chain 27444 chrX 156040895 + 134945040 134945454 LTR7B 505 + 8 494 45649 97 0 10 59 1 39 12 34 60 79 1 0 77 14 13 40 chain 27774 chrX 156040895 + 134946333 134946719 LTR7 482 + 0 469 45220 101 15 14 17 0 51 41 5 37 46 0 1 161 chain 28667 chrX 156040895 + 134950471 134950867 L1P3 4156 + 0 401 43849 183 1 0 50 25 32 54 1 0 82 chain 36067 chrX 156040895 + 134951767 134952184 L1PA7 6471 + 6048 6465 37369 417 chain 125949 chrX 156040895 + 134959763 134961163 SVA_D 2077 + 58 2073 14568 170 0 1 158 0 3 76 0 76 337 0 535 659 chain 76026 chrX 156040895 + 135023851 135024722 MER11D 897 + 0 897 22563 502 1 3 69 0 23 186 0 1 113 chain 89981 chrX 156040895 + 135026425 135028375 L1PB2 3958 + 2409 3838 19688 68 0 6 7 1 0 85 4 8 157 3 0 131 5 15 32 12 15 130 1 0 165 0 2 5 5 6 39 10 27 49 6 5 16 4 6 48 23 20 4 1 0 36 551 0 54 14 13 59 1 0 64 2 1 22 4 10 11 14 9 19 2 0 22 1 0 63 chain 42050 chrX 156040895 + 135027558 135028009 L1HS 6032 + 5581 6032 33324 451 chain 71637 chrX 156040895 + 135030344 135031305 LTR5_Hs 974 + 0 974 23627 459 0 4 195 1 2 9 24 25 82 7 7 112 0 9 36 3 1 33 chain 40368 chrX 156040895 + 135048232 135048676 L1PA3long 6157 + 5712 6156 34403 444 chain 81315 chrX 156040895 + 135066086 135067026 LTR13_ 950 + 11 950 21367 145 0 1 114 0 2 121 1 0 258 2 0 147 1 0 151 chain 3649 chrX 156040895 + 135072062 135072112 MER94 134 + 20 70 94032 50 chain 114080 chrX 156040895 + 135088697 135090229 THE1C-int 1605 + 2 1605 16544 16 1 0 78 0 57 17 10 7 151 14 20 82 15 22 307 8 2 319 7 0 136 5 18 245 0 5 121 chain 38808 chrX 156040895 + 135145227 135145653 L1PA4 6152 + 4366 4792 35496 426 chain 82631 chrX 156040895 + 135206316 135207322 LTR13 1007 + 0 1007 21098 42 0 2 337 4 5 242 2 1 54 0 2 9 2 0 5 2 0 116 0 1 191 chain 71426 chrX 156040895 + 135227841 135228618 L1PA4 6152 + 5374 6151 23668 777 chain 6659 chrX 156040895 + 135236113 135236228 L1MA3 4352 + 3938 4043 78775 50 21 11 44 chain 29961 chrX 156040895 + 135272678 135273078 MER51B 395 + 0 386 42090 26 26 13 206 1 0 141 chain 31420 chrX 156040895 + 135321758 135322224 LTR22B 500 + 0 500 40799 34 0 6 8 0 3 71 39 35 198 14 41 81 0 1 11 0 1 10 chain 146050 chrX 156040895 + 135325273 135326980 LTR12C 1709 + 0 1709 12610 189 20 1 9 0 20 15 0 1 602 1 0 275 1 0 4 4 2 106 0 4 481 chain 22617 chrX 156040895 + 135376747 135377154 MSTA 426 + 0 405 52959 129 2 0 9 56 65 5 2 0 12 31 29 44 6 0 83 0 1 28 chain 14824 chrX 156040895 + 135386627 135386798 MER4A1 472 + 0 171 62490 171 chain 120717 chrX 156040895 + 135387181 135388530 L1P1 4361 + 2510 3862 15398 644 0 2 103 0 2 242 1 0 359 chain 14644 chrX 156040895 + 135393376 135393626 MLT2A1 477 + 0 265 62741 44 9 8 21 0 1 31 5 15 22 9 10 17 0 4 18 1 0 4 3 5 5 1 0 60 chain 70810 chrX 156040895 + 135393967 135395108 HERVL-int 5654 + 4804 5654 23805 261 302 0 296 0 3 61 0 7 48 0 1 173 chain 84353 chrX 156040895 + 135406098 135407066 LTR5_Hs 974 + 1 974 20742 821 5 12 36 2 0 104 chain 87591 chrX 156040895 + 135414077 135415142 L1PA7 6471 + 5416 6461 20123 9 5 0 187 27 12 837 chain 38233 chrX 156040895 + 135439886 135440550 L1PA15 4387 + 3711 4366 35887 102 2 0 16 4 0 6 5 6 18 12 14 16 6 4 40 1 0 167 5 4 26 1 0 55 1 0 22 4 0 11 1 0 8 36 48 42 2 0 10 7 3 27 1 0 10 chain 63312 chrX 156040895 + 135462151 135463112 L1PB1 5432 + 4544 5413 25559 35 2 0 47 3 0 12 0 1 464 1 2 9 3 0 21 1 0 12 1 0 9 10 6 5 2 0 52 1 0 18 1 0 43 1 0 16 4 1 12 9 0 16 66 8 13 2 0 24 1 0 21 1 0 13 1 0 9 chain 136282 chrX 156040895 + 135465481 135467544 L1MA3 4352 + 2325 4352 13412 185 5 0 9 0 3 65 1 0 249 0 1 143 0 2 73 9 10 12 3 4 416 1 2 79 3 0 28 5 4 51 76 75 168 0 1 73 4 3 51 2 1 37 6 7 15 30 14 7 3 0 57 2 3 63 4 0 18 6 4 17 3 0 5 1 3 5 1 0 5 3 0 24 1 0 11 6 2 22 chain 2150 chrX 156040895 + 135486707 135486780 MADE1 96 + 0 96 105542 22 0 23 51 chain 6469 chrX 156040895 + 135588793 135588942 L1MB5 1630 + 442 592 79451 45 58 59 46 chain 5512 chrX 156040895 + 135593898 135593977 MADE1 96 + 0 96 83189 26 0 1 12 1 17 40 chain 54821 chrX 156040895 + 135620677 135621275 L1PA3long 6157 + 5557 6155 27939 598 chain 146048 chrX 156040895 + 135682200 135684127 L1PA11 4918 + 2578 4504 12611 390 45 45 88 0 1 89 0 2 127 0 1 24 0 1 475 1 3 148 0 1 351 3 0 4 2 0 65 2 1 79 3 1 15 1 0 15 chain 3046 chrX 156040895 + 135696956 135697035 MADE1 96 + 0 96 99362 26 13 30 40 chain 92992 chrX 156040895 + 135727689 135728826 L1PA6 6164 + 4780 6159 19180 304 3 0 87 4 5 56 0 165 543 6 85 134 chain 49619 chrX 156040895 + 135744724 135745274 L1PA4 6152 + 5602 6152 29717 550 chain 19888 chrX 156040895 + 135747081 135747484 LTR14B 630 + 0 629 56549 56 0 179 39 32 53 33 12 22 18 15 25 86 44 50 68 chain 37610 chrX 156040895 + 135751538 135752143 L1MA3 4352 + 3752 4328 36330 324 88 62 30 0 3 63 5 1 47 1 0 6 1 0 6 0 1 19 2 1 13 chain 284560 chrX 156040895 + 135755626 135758829 L1PA4 6152 + 2955 6152 7298 228 1 0 755 0 1 375 1 0 122 1 0 369 5 0 651 5 5 431 0 1 259 chain 28794 chrX 156040895 + 135766020 135766377 L1PA7 6471 + 6080 6459 43642 87 0 21 154 0 1 116 chain 133620 chrX 156040895 + 135774833 135776324 L1PA4 6152 + 4652 6143 13680 1491 chain 28794 chrX 156040895 + 135783307 135783664 L1PA7 6471 + 6080 6459 43641 87 0 21 154 0 1 116 chain 58198 chrX 156040895 + 135792094 135792743 L1PA4 6152 + 4652 5301 26901 649 chain 75422 chrX 156040895 + 135792744 135793586 L1PA4 6152 + 5301 6143 22741 842 chain 28794 chrX 156040895 + 135800573 135800930 L1PA7 6471 + 6080 6459 43640 87 0 21 153 0 1 117 chain 35813 chrX 156040895 + 135809367 135809769 L1PA4 6152 + 4652 5054 37518 402 chain 97940 chrX 156040895 + 135809772 135810861 L1PA4 6152 + 5054 6143 18534 1089 chain 28794 chrX 156040895 + 135817843 135818200 L1PA7 6471 + 6080 6459 43639 87 0 21 154 0 1 116 chain 133620 chrX 156040895 + 135826633 135828124 L1PA4 6152 + 4652 6143 13679 1491 chain 28794 chrX 156040895 + 135835113 135835470 L1PA7 6471 + 6080 6459 43638 87 0 21 154 0 1 116 chain 58320 chrX 156040895 + 135843887 135844536 L1PA4 6152 + 4652 5301 26862 649 chain 75647 chrX 156040895 + 135844537 135845379 L1PA4 6152 + 5301 6143 22675 842 chain 28794 chrX 156040895 + 135852363 135852720 L1PA7 6471 + 6080 6459 43637 87 0 21 153 0 1 117 chain 118013 chrX 156040895 + 135860814 135862664 L1PA4 6152 + 4300 6143 15882 352 4 0 402 3 0 1089 chain 28672 chrX 156040895 + 135869641 135869998 L1PA7 6471 + 6080 6459 43840 87 0 21 154 0 1 116 chain 117661 chrX 156040895 + 135878093 135879944 L1PA4 6152 + 4300 6143 15946 352 4 0 402 3 0 247 1 0 842 chain 28428 chrX 156040895 + 135886920 135887277 L1PA7 6471 + 6080 6459 44223 87 0 21 153 0 1 117 chain 5511 chrX 156040895 + 135916376 135916447 MLT1E3 631 + 560 631 83197 71 chain 6901 chrX 156040895 + 135949906 135949989 L1MB2 1706 + 1611 1694 77951 83 chain 32172 chrX 156040895 + 135978755 135979201 LOR1b 457 + 10 457 40214 17 5 15 106 3 0 34 0 1 5 12 5 264 chain 28476 chrX 156040895 + 136075838 136076151 AluYa5 310 + 0 310 44163 97 3 1 34 1 0 178 chain 6554 chrX 156040895 + 136106768 136106849 MER51A 677 + 0 81 79147 81 chain 30757 chrX 156040895 + 136124061 136124544 MER51A 677 + 4 661 41344 145 29 163 17 6 6 46 11 58 93 6 7 40 12 4 78 chain 155026 chrX 156040895 + 136297905 136299690 L1PA4 6152 + 4363 6151 12054 794 4 5 84 1 0 58 12 14 317 4 4 507 0 1 4 chain 11094 chrX 156040895 + 136302381 136302500 L1PA5 6144 + 4251 4370 68418 119 chain 21600 chrX 156040895 + 136333063 136333293 L1PA2 6032 + 4742 4972 54354 230 chain 3735 chrX 156040895 + 136416572 136416658 L1PB1 5432 + 5346 5427 93357 24 1 0 14 8 7 13 4 3 9 1 0 7 1 0 4 chain 61313 chrX 156040895 + 136421124 136421903 LTR12 884 + 0 884 26030 25 1 0 53 1 108 192 2 0 124 0 1 381 chain 26998 chrX 156040895 + 136560606 136560908 AluYc 301 + 0 300 46276 114 2 0 186 chain 30293 chrX 156040895 + 136602255 136602584 L1PA2 6032 + 5701 6030 41767 329 chain 13236 chrX 156040895 + 136615296 136615491 MER30 238 + 0 207 64725 104 9 0 7 8 32 47 3 0 17 chain 15994 chrX 156040895 + 136631539 136631831 Tigger2 2703 + 2400 2703 61032 12 11 8 78 10 23 46 0 4 47 4 8 38 15 10 7 2 0 22 chain 13680 chrX 156040895 + 136708178 136708370 L1PA8 5853 + 5656 5844 64040 22 2 1 13 1 0 48 2 1 19 1 0 84 chain 9409 chrX 156040895 + 136714284 136714399 L1PA6 6164 + 6041 6156 71677 115 chain 17582 chrX 156040895 + 136741288 136741519 Tigger2 2703 + 2399 2658 59142 156 3 31 72 chain 181033 chrX 156040895 + 136775104 136778116 L1PB1 5432 + 2869 5411 10547 39 31 33 656 0 1 4 1 0 13 0 1 15 19 25 73 4 6 564 23 3 318 394 10 47 0 1 52 5 7 16 0 1 39 8 5 101 4 0 199 59 16 22 1 0 6 3 2 14 18 12 50 2 1 16 1 0 41 11 10 8 3 0 14 9 0 13 2 0 9 1 0 14 3 1 23 1 0 22 1 0 12 1 0 7 chain 7326 chrX 156040895 + 136786847 136786954 L1MB8 1703 + 793 897 76577 46 1 0 29 3 1 28 chain 11758 chrX 156040895 + 136798410 136798575 L1PA8 5853 + 5688 5853 67294 52 2 1 19 1 0 33 1 3 57 chain 41747 chrX 156040895 + 136805441 136805976 MER41A 554 + 0 539 33520 336 4 3 45 2 7 148 chain 21348 chrX 156040895 + 136835917 136836286 THE1D 372 + 0 372 54706 22 1 2 27 9 0 50 2 3 77 35 40 16 3 9 89 6 5 32 chain 8226 chrX 156040895 + 136888200 136888325 MLT1A0 366 + 31 150 74335 74 8 4 35 2 0 6 chain 30633 chrX 156040895 + 136898782 136899126 LTR14A 344 + 0 344 41441 344 chain 108171 chrX 156040895 + 136921248 136922756 LTR12C 1709 + 0 1709 17297 181 0 1 11 23 44 101 10 53 73 7 10 184 0 119 60 1 0 16 1 0 223 0 47 92 44 13 132 10 12 225 1 0 22 8 7 83 chain 257151 chrX 156040895 + 137005440 137008616 L1PA7 6471 + 3241 6469 8055 124 0 4 107 0 2 6 3 1 12 2 0 75 0 5 430 1 5 336 8 28 282 8 20 233 13 8 276 0 4 79 6 7 32 3 4 281 0 4 10 1 0 51 0 2 14 0 4 11 0 1 161 0 1 446 17 16 136 2 0 10 chain 27214 chrX 156040895 + 137108043 137108441 L1PA8 5853 + 5447 5846 45947 12 0 8 97 1 0 44 2 0 74 8 6 37 17 16 19 1 0 86 chain 444071 chrX 156040895 + 137122418 137127450 L1PA4 6152 + 0 5054 4494 532 4 0 2641 1 0 335 0 1 444 0 1 91 0 22 387 0 3 597 chain 469267 chrX 156040895 + 137129952 137135620 L1PA7 6471 + 816 6470 3880 170 6 7 90 0 1 154 0 1 4 10 9 10 0 1 4 1 0 89 0 1 1084 5 0 209 15 6 526 0 2 360 0 4 196 0 4 81 33 0 382 0 11 265 0 1 119 0 2 67 0 4 726 4 5 905 1 2 152 chain 32701 chrX 156040895 + 137139549 137139919 L1PA5 6144 + 5761 6131 39762 75 1 0 165 0 1 129 chain 3502 chrX 156040895 + 137168071 137168108 MLT2A1 477 + 440 477 95239 37 chain 13135 chrX 156040895 + 137207945 137208185 L1MA7 2200 + 1875 2087 64873 74 2 0 18 40 25 58 11 0 37 chain 71388 chrX 156040895 + 137208282 137209067 L1PA5 6144 + 5359 6144 23678 785 chain 42084 chrX 156040895 + 137212782 137213319 MER41A 554 + 14 554 33300 154 0 1 151 2 1 83 0 2 24 0 1 123 chain 9999 chrX 156040895 + 137213976 137214102 MER57A1 433 + 301 427 70427 126 chain 151505 chrX 156040895 + 137217642 137219779 MER57-int 2662 + 526 2659 12252 253 18 23 68 0 8 97 8 9 100 1 0 20 1 5 260 0 2 28 1 0 202 0 16 292 3 0 80 3 4 340 3 0 63 6 1 27 18 12 52 0 4 12 14 2 11 2 0 21 6 5 6 1 0 9 1 0 24 1 0 10 5 0 33 3 0 34 chain 33189 chrX 156040895 + 137219784 137220216 MER57A1 433 + 0 433 39366 280 3 4 149 chain 55486 chrX 156040895 + 137347441 137348179 L1PB 1623 + 814 1524 27727 483 29 12 137 1 0 7 2 1 30 1 0 5 3 0 9 8 4 14 1 0 8 chain 2857 chrX 156040895 + 137379411 137379442 LTR68 653 + 1 32 101164 31 chain 34867 chrX 156040895 + 137390413 137390820 L1PA7 6471 + 5552 5958 38114 70 1 0 336 chain 43973 chrX 156040895 + 137390823 137391321 L1PA7 6471 + 5959 6458 32144 372 0 1 126 chain 526762 chrX 156040895 + 137433085 137439976 L1PA7 6471 + 1 6468 1966 212 1 0 82 5 7 79 5 9 21 0 1 183 13 10 146 0 1 290 1 13 342 0 3 448 0 73 710 0 1 898 0 2 343 0 18 116 1 0 341 0 3 212 329 0 179 0 1 184 232 0 106 0 7 300 7 6 75 0 2 196 1 0 641 0 1 72 17 32 92 2 0 9 chain 88832 chrX 156040895 + 137487945 137488972 L1PA5 6144 + 5110 6144 19886 644 0 1 38 0 5 155 2 3 188 chain 12687 chrX 156040895 + 137491029 137491412 MLT1B 390 + 0 390 65642 22 155 157 7 6 0 26 30 41 137 chain 213685 chrX 156040895 + 137509717 137512272 L1PA7 6471 + 3732 6285 9211 755 1 2 577 0 1 318 8 1 41 0 1 40 0 4 148 2 1 660 1 0 4 chain 15132 chrX 156040895 + 137512272 137512453 L1PA7 6471 + 6286 6467 62122 181 chain 56501 chrX 156040895 + 137603099 137603922 L1M1 2793 + 1108 1919 27428 72 1 0 36 0 1 33 4 0 19 7 0 14 2 1 386 0 2 7 0 6 36 6 9 76 12 15 47 17 6 16 7 4 25 chain 76936 chrX 156040895 + 137605372 137608866 L1MA2 4263 + 1479 4111 22335 6 2 0 43 12 11 89 6 9 247 10 9 77 29 0 284 2296 1475 80 3 0 147 11 9 93 7 0 18 0 2 27 1 0 6 chain 7479 chrX 156040895 + 137649047 137649252 L1MA6 2487 + 1798 1995 76176 32 93 86 11 1 0 68 chain 23864 chrX 156040895 + 137665586 137665850 L1PA2 6032 + 5762 6026 51006 264 chain 560857 chrX 156040895 + 137672117 137678259 L1PA3long 6157 + 15 6157 151 6142 chain 11560 chrX 156040895 + 137737445 137737656 MSTB 430 + 202 416 67642 5 3 0 38 23 24 38 8 13 37 1 0 4 0 1 54 chain 75111 chrX 156040895 + 137785776 137786609 L1PA3long 6157 + 5308 6149 22814 590 0 1 103 1 8 139 chain 520477 chrX 156040895 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157 chain 517525 chrX 156040895 + 137959684 137965821 L1PA6 6164 + 0 6155 2398 410 1 0 69 32 31 99 0 1 177 0 17 904 0 1 625 5 0 146 0 1 101 0 4 426 0 1 176 0 1 1310 9 9 807 1 0 839 chain 508210 chrX 156040895 + 137970981 137977112 L1PA6 6164 + 0 6156 2835 114 0 1 4 1 0 127 11 16 187 19 0 85 0 1 34 1 0 218 0 17 121 0 6 30 5 4 273 0 1 179 0 5 29 0 1 879 1 2 810 1 0 45 0 1 115 0 1 1872 0 1 129 0 1 447 0 9 109 4 0 127 0 1 154 chain 40533 chrX 156040895 + 138026693 138027244 MER41A 554 + 0 554 34283 92 0 1 225 0 1 21 24 20 71 5 11 4 1 0 108 chain 36753 chrX 156040895 + 138050832 138051299 L1PA15 4387 + 1326 1794 36921 238 0 1 229 chain 118771 chrX 156040895 + 138063067 138064329 L1HS 6032 + 4770 6032 15754 1262 chain 520920 chrX 156040895 + 138073442 138079552 L1PA5 6144 + 0 6138 2232 135 7 33 494 0 13 494 9 0 203 0 1 940 2 1 82 1 0 621 3 4 155 1 0 659 2 0 119 0 1 324 1 0 286 1 3 602 7 5 630 0 1 332 chain 392985 chrX 156040895 + 138087029 138092225 L1PB1 5432 + 77 5319 5270 137 4 16 59 1 2 115 2 1 137 6 1 217 2 0 633 0 1 7 6 0 102 0 2 51 6 7 81 6 5 214 0 1 60 6 1 162 8 7 53 1 2 115 0 3 226 16 7 68 25 25 409 3 4 192 2 5 86 1 0 302 5 9 238 0 1 132 6 11 13 5 6 624 6 0 272 0 2 195 0 62 9 2 0 41 1 0 5 26 25 42 1 0 16 14 1 22 chain 63946 chrX 156040895 + 138097296 138098002 L1PA3long 6157 + 5037 5744 25423 287 1 2 418 chain 505087 chrX 156040895 + 138105303 138111440 L1PA6 6164 + 0 6160 2967 141 0 12 46 0 1 291 1 2 18 1 0 421 1 26 217 45 17 771 0 1 171 0 1 189 3 0 74 0 4 634 3 4 148 0 1 1162 10 14 1098 5 6 384 0 1 160 1 2 32 18 19 92 chain 4354 chrX 156040895 + 138141919 138141970 MER34A 573 + 10 61 89148 51 chain 508314 chrX 156040895 + 138198311 138204364 L1PA5 6144 + 0 6077 2829 62 2 3 55 0 14 449 0 3 14 5 9 117 1 0 186 0 3 48 0 1 205 9 0 353 1 0 4 0 1 216 1 2 17 0 1 191 0 1 4 1 0 565 0 2 643 3 1 168 0 2 313 0 1 28 1 0 88 0 1 1523 1 0 95 0 1 111 0 1 397 1 3 175 chain 29564 chrX 156040895 + 138216862 138217220 L1PA7 6471 + 5485 5842 42529 136 1 0 221 chain 514047 chrX 156040895 + 138230740 138236883 L1PA6 6164 + 0 6160 2569 234 17 17 118 1 9 17 9 8 107 1 0 232 20 19 26 0 17 982 0 1 62 0 1 474 5 1 939 0 3 2344 6 0 287 0 1 135 0 1 119 2 0 6 chain 16473 chrX 156040895 + 138242018 138242215 L1PB1 5432 + 4430 4627 60409 197 chain 14426 chrX 156040895 + 138242217 138242376 L1PB1 5432 + 4627 4788 62996 78 0 2 81 chain 28507 chrX 156040895 + 138242413 138243016 L1PB1 5432 + 4815 5281 44119 288 1 2 9 133 0 24 56 53 26 5 4 16 6 5 39 chain 5892 chrX 156040895 + 138243083 138243174 L1PB1 5432 + 5332 5418 81516 14 2 0 24 1 0 21 1 0 13 1 0 14 chain 23138 chrX 156040895 + 138258660 138259059 LTR7 482 + 0 482 52161 69 6 95 21 51 0 15 1 11 13 0 1 33 0 32 129 12 14 49 chain 289062 chrX 156040895 + 138259061 138262841 HERVH-int 3825 + 0 3825 7160 469 1 0 66 6 1 9 0 1 24 1 0 10 1 0 19 1 2 5 0 50 41 1 0 21 209 0 60 0 1 447 15 0 187 1 0 17 9 0 28 0 2 10 1 0 309 0 1 176 6 21 98 0 1 767 0 4 223 9 11 39 8 218 130 2 1 129 0 2 225 chain 2228 chrX 156040895 + 138259761 138259857 HERVH-int 3825 + 640 714 89699 15 22 1 40 2 1 17 chain 82475 chrX 156040895 + 138333486 138334454 LTR5_Hs 974 + 0 974 21138 285 0 1 286 1 0 235 0 1 14 5 12 36 2 0 104 chain 46232 chrX 156040895 + 138342817 138343325 L1PA3long 6157 + 4569 5077 30946 508 chain 10402 chrX 156040895 + 138368177 138368309 L1MA3 4352 + 3927 4059 69613 132 chain 120375 chrX 156040895 + 138392612 138394088 L1PA7 6471 + 4966 6467 15466 95 0 4 202 11 17 14 0 1 148 0 8 167 0 2 99 0 1 190 6 0 79 0 1 69 0 9 132 1 2 115 1 0 80 1 0 66 chain 4302 chrX 156040895 + 138401732 138401785 L1MA8 2339 + 2010 2063 89486 53 chain 535971 chrX 156040895 + 138455854 138461988 L1PA5 6144 + 3 6143 1565 621 1 3 344 0 1 967 1 0 1991 1 2 1206 0 1 155 0 1 377 7 1 7 0 6 124 1 2 331 chain 404425 chrX 156040895 + 138463598 138469343 L1PB1 5432 + 54 5430 5099 45 5 7 304 6 7 135 15 12 44 0 4 345 4 0 115 12 6 68 0 1 255 6 0 5 6 0 147 1 20 80 304 0 243 15 0 590 28 10 27 0 1 27 8 9 25 0 5 248 2 3 613 5 0 41 0 1 36 0 1 198 8 0 227 1 0 406 7 1 61 9 10 45 30 35 280 2 1 302 31 34 12 1 0 12 4 0 9 2 0 49 4 3 18 1 0 43 1 0 16 3 0 12 9 0 20 27 22 20 1 0 21 1 0 13 1 0 16 2 0 10 chain 79883 chrX 156040895 + 138508349 138509350 L1PA8A 6298 + 5265 6291 21645 9 0 18 51 0 5 141 2 1 89 8 9 391 0 1 290 0 1 20 chain 23434 chrX 156040895 + 138517664 138517932 L1P1 4361 + 3553 3821 51702 268 chain 30602 chrX 156040895 + 138561411 138561832 HSMAR1 1287 + 0 439 41466 45 0 1 48 0 1 26 5 7 35 0 11 116 0 1 10 12 14 124 chain 20591 chrX 156040895 + 138604900 138605179 AluSp 311 + 9 283 55655 38 22 17 219 chain 8418 chrX 156040895 + 138607001 138607139 MER51B 395 + 0 389 73863 40 7 26 34 8 240 49 chain 4865 chrX 156040895 + 138629715 138629874 MER5A 189 + 0 165 86344 16 12 16 36 29 30 14 27 28 25 chain 26911 chrX 156040895 + 138634645 138635028 L1PB2 3958 + 3453 3838 46392 91 2 1 37 0 1 35 1 0 53 0 6 4 1 0 72 3 1 21 1 0 55 0 1 7 chain 56972 chrX 156040895 + 138659335 138660073 L1PA8 5853 + 5121 5853 27277 440 2 1 48 11 9 59 2 1 8 5 4 49 2 1 19 1 0 57 2 3 33 chain 14542 chrX 156040895 + 138730176 138730345 L1PA5 6144 + 5974 6143 62848 169 chain 16506 chrX 156040895 + 138743070 138743456 L1MC1 2226 + 1755 2120 60361 87 15 12 24 14 11 28 12 14 42 14 13 6 2 0 55 54 42 11 6 4 16 chain 12140 chrX 156040895 + 138778045 138778175 L1PA3long 6157 + 4 134 66586 130 chain 540837 chrX 156040895 + 138778307 138784320 L1PA3long 6157 + 4 6152 1292 649 0 1 87 0 1 26 8 136 296 0 1 1496 1 0 762 0 9 725 4 0 1959 chain 373442 chrX 156040895 + 138807337 138811606 L1PA5 6144 + 1873 6141 5597 508 0 3 817 0 1 17 14 10 1008 0 3 1895 4 0 6 chain 12638 chrX 156040895 + 138846558 138846709 MSTA 426 + 254 405 65734 151 chain 62179 chrX 156040895 + 138851503 138852295 L1PA10 4194 + 3371 4161 25822 531 0 1 21 3 2 5 0 2 149 1 0 19 3 4 11 4 1 33 1 0 11 chain 33424 chrX 156040895 + 138873771 138874155 L1PA5 6144 + 5752 6135 39156 237 1 0 146 chain 15837 chrX 156040895 + 138877012 138877224 L1PA8A 6298 + 6078 6288 61240 99 3 1 4 1 0 85 0 1 20 chain 71645 chrX 156040895 + 138879750 138880596 L1PA7 6471 + 5379 6225 23623 63 0 1 178 1 0 604 chain 28588 chrX 156040895 + 138891605 138892002 MLT2A1 477 + 1 398 43978 141 3 4 23 0 4 52 0 8 143 0 3 8 16 0 11 chain 69388 chrX 156040895 + 138894229 138895043 L1P1 4361 + 3054 3864 24143 123 2 0 333 3 0 260 1 2 92 chain 148867 chrX 156040895 + 138951899 138953587 L1PA4 6152 + 4461 6152 12429 472 0 1 1136 1 3 79 chain 108878 chrX 156040895 + 138961590 138962851 L1PA5 6144 + 4730 5989 17200 284 1 0 888 1 0 87 chain 12682 chrX 156040895 + 138962859 138963005 L1PA5 6144 + 5998 6144 65653 146 chain 9599 chrX 156040895 + 138976270 138976471 L1PB3 3668 + 3415 3590 71270 62 21 5 18 8 5 23 3 1 37 7 3 13 1 0 8 chain 285848 chrX 156040895 + 138996129 139000000 L1P2 5180 + 69 3809 7261 60 25 24 36 6 5 41 15 16 103 34 7 85 19 0 69 1 0 4 17 15 28 22 0 3 54 0 172 21 0 50 0 15 141 0 1 36 1 0 257 0 1 456 2 0 127 1 3 334 8 9 25 1 2 124 4 1 1418 0 1 71 chain 189807 chrX 156040895 + 139000000 139002348 L1PA7 6471 + 4123 6465 10131 685 0 2 145 1 0 29 0 1 356 1 0 280 1 0 10 18 15 87 0 1 403 1 0 170 0 7 3 6 0 96 1 0 46 3 0 6 chain 16081 chrX 156040895 + 139013537 139013867 L1PB1 5432 + 5118 5421 60916 20 1 0 8 1 0 12 16 10 51 7 6 12 1 0 29 16 15 21 15 7 15 2 0 8 1 0 14 2 0 24 1 0 22 1 0 12 1 0 17 chain 336388 chrX 156040895 + 139065115 139071140 L1PA7 6471 + 2266 6467 6123 375 24 3 12 1 4 216 0 2 606 1 2 5 0 14 118 0 1 111 0 29 69 9 11 170 5 0 288 7 6 408 2 0 5 0 2 224 1847 0 583 0 2 89 5 4 73 0 2 389 9 0 228 1 9 135 4 0 6 chain 71235 chrX 156040895 + 139068833 139069618 L1PA2 6032 + 5239 6022 23551 780 2 0 3 chain 9248 chrX 156040895 + 139072308 139072503 MLT1B 390 + 198 390 72027 6 4 0 16 59 60 110 chain 105075 chrX 156040895 + 139145937 139147119 L1PA5 6144 + 4951 6135 17675 600 0 1 442 0 1 140 chain 406813 chrX 156040895 + 139158592 139163543 L1PA7 6471 + 1570 6461 5058 304 2 1 766 21 11 838 8 7 70 4 0 269 0 1 167 7 6 200 0 3 192 4 7 7 2 0 15 61 3 11 0 1 182 3 1 116 0 1 66 1 5 160 1 0 156 0 1 186 3 10 288 1 0 840 chain 23266 chrX 156040895 + 139166126 139166489 THE1C 375 + 0 375 51979 40 0 5 93 12 16 22 0 2 8 0 1 6 26 20 120 0 7 10 1 0 25 chain 3576 chrX 156040895 + 139179146 139179196 MADE1 96 + 46 96 94613 4 1 0 19 0 1 26 chain 3068 chrX 156040895 + 139211828 139211902 LTR16A 446 + 260 335 99109 13 28 29 33 chain 342859 chrX 156040895 + 139238831 139243597 L1PA11 4918 + 8 4578 6012 7 1 0 29 2 0 36 8 5 30 1 0 13 2 0 51 2 1 33 2 0 5 2 1 402 0 18 573 0 4 415 0 1 51 20 22 108 2 1 146 0 1 98 1 0 89 2 0 91 200 0 476 4 6 31 0 1 196 6 7 231 0 1 173 10 13 30 17 27 342 6 0 7 0 1 144 1 0 4 5 6 107 0 1 291 0 3 56 2 1 20 2 0 61 2 0 13 2 1 19 4 0 9 31 22 15 1 0 13 2 0 11 chain 9625 chrX 156040895 + 139241117 139241247 L1PA11 4918 + 2104 2233 71209 73 0 1 24 1 0 6 1 0 25 chain 536108 chrX 156040895 + 139259549 139265662 L1PA5 6144 + 3 6131 1559 915 0 4 297 0 1 305 0 1 1251 1 0 72 0 1 351 0 1 646 0 5 16 5 6 37 2 1 59 0 1 378 0 2 269 1 0 700 0 1 808 chain 67760 chrX 156040895 + 139277973 139279005 L1MA2 4263 + 3110 4115 24504 325 1 0 132 0 1 14 0 2 5 4 0 23 0 1 49 2 1 107 7 4 22 6 7 5 3 0 55 3 0 5 26 16 68 15 13 40 0 2 46 24 18 34 1 0 10 chain 18376 chrX 156040895 + 139306532 139306889 THE1D 372 + 0 372 58266 54 11 21 53 0 4 34 88 90 84 1 0 32 chain 92681 chrX 156040895 + 139306893 139308289 THE1D-int 1627 + 1 1621 19240 11 0 2 214 0 1 5 3 4 30 5 6 71 1 103 84 7 6 185 3 0 18 21 36 112 1 6 161 1 0 4 0 1 41 0 205 25 1 2 148 105 0 139 chain 8010 chrX 156040895 + 139308053 139308150 THE1D-int 1627 + 1491 1586 74863 23 2 0 72 chain 111240 chrX 156040895 + 139320629 139322044 LTR12C 1709 + 0 1709 16911 140 13 22 100 0 1 201 6 7 30 11 9 140 0 278 144 0 2 38 1 0 5 3 1 102 15 8 216 0 13 14 2 5 149 1 0 84 chain 22374 chrX 156040895 + 139362691 139362965 AluSp 311 + 39 311 53307 94 2 0 178 chain 68752 chrX 156040895 + 139376279 139377093 L1PA7 6471 + 5642 6454 24269 251 2 0 328 0 1 91 2 1 140 chain 29618 chrX 156040895 + 139396227 139396631 MLT2A1 477 + 0 407 42462 169 4 1 11 6 7 17 0 1 168 1 11 12 6 0 10 chain 466455 chrX 156040895 + 139396670 139402635 HERVL-int 5654 + 0 5645 3949 48 0 14 208 0 42 343 2 0 513 391 0 126 0 1 5 0 2 4 1 0 690 0 1 27 0 1 177 1 0 346 4 3 352 0 1 598 15 14 331 1 2 625 0 1 200 4 5 424 3 14 383 0 1 143 chain 32479 chrX 156040895 + 139397799 139398175 L1PA5 6144 + 5770 6142 39960 365 4 0 7 chain 24123 chrX 156040895 + 139416509 139416870 THE1B 368 + 0 367 50617 107 2 3 57 1 0 8 0 1 14 8 15 4 1 0 5 0 1 12 3 2 13 8 7 118 chain 502535 chrX 156040895 + 139435696 139441420 L1PA4 6152 + 0 5734 3041 728 1 3 368 0 11 1587 5 0 302 0 1 940 0 1 1793 chain 133991 chrX 156040895 + 139445273 139446745 L1PA3long 6157 + 4686 6157 13657 1212 1 0 259 chain 121740 chrX 156040895 + 139461488 139463056 THE1A-int 1579 + 0 1574 15220 75 5 14 389 4 6 134 1 0 430 5 2 88 9 5 7 0 4 408 1 0 12 chain 16190 chrX 156040895 + 139476173 139476447 LTR56 451 + 37 315 60760 38 56 59 81 0 1 99 chain 61501 chrX 156040895 + 139489510 139490197 L1PA4 6152 + 4834 5521 25986 687 chain 123433 chrX 156040895 + 139510695 139512069 L1PA5 6144 + 4770 6144 14951 1374 chain 45458 chrX 156040895 + 139517757 139518302 LTR14 556 + 0 556 31335 463 0 10 78 0 1 4 chain 15880 chrX 156040895 + 139523362 139523542 L1PBa 3878 + 1975 2155 61181 180 chain 546304 chrX 156040895 + 139523554 139529699 L1PA4 6152 + 0 6152 953 511 0 5 1194 1 0 608 0 2 1620 0 1 1351 0 1 524 4 3 332 chain 218031 chrX 156040895 + 139593343 139595737 L1PA3long 6157 + 3451 6157 9094 462 5 317 1927 chain 4968 chrX 156040895 + 139619392 139619460 L1PB1 5432 + 5346 5411 85814 24 1 0 21 1 0 13 1 0 7 chain 123488 chrX 156040895 + 139621520 139622891 L1PA4 6152 + 4781 6151 14940 1117 1 0 253 chain 42615 chrX 156040895 + 139627904 139628472 L1PA16 3655 + 3019 3589 32993 8 0 1 176 1 0 6 0 1 62 0 1 16 6 5 222 0 4 56 3 0 12 chain 51142 chrX 156040895 + 139676830 139677511 MER50 708 + 0 685 29184 45 7 10 111 5 6 28 0 1 54 0 1 4 1 0 20 1 0 14 0 1 184 2 1 205 chain 38770 chrX 156040895 + 139685239 139685701 LTR2 463 + 0 463 35518 362 12 13 88 chain 42872 chrX 156040895 + 139685739 139686351 L1PREC2 3366 + 1696 2304 32850 67 4 9 178 3 2 79 10 0 133 12 15 60 2 1 64 chain 11540 chrX 156040895 + 139720589 139720735 BC200 147 + 6 147 67683 36 2 0 96 3 0 9 chain 37236 chrX 156040895 + 139753022 139753525 L1PA15 4387 + 1072 1575 36595 127 2 1 65 7 9 202 1 0 99 chain 27001 chrX 156040895 + 139771051 139771404 THE1A 353 + 0 353 46271 111 1 0 59 0 2 30 12 11 140 chain 130741 chrX 156040895 + 139771404 139772966 THE1A-int 1579 + 0 1574 13952 447 0 1 203 0 1 69 0 3 115 0 1 575 2 0 78 0 8 73 chain 25959 chrX 156040895 + 139772971 139773320 THE1A 353 + 0 353 47780 109 2 1 32 1 0 39 0 1 4 1 0 16 1 0 31 0 7 113 chain 7923 chrX 156040895 + 139840881 139841009 L1PB1 5432 + 5308 5427 75064 19 2 0 5 1 0 14 2 0 24 1 0 6 0 1 14 1 0 13 1 0 18 2 0 5 chain 195895 chrX 156040895 + 139854540 139857273 HERVIP10FH-int 2884 + 149 2876 9846 62 8 0 4 4 0 184 2 1 49 8 10 168 1 0 9 1 0 11 0 1 423 1 7 139 0 1 162 4 1 7 3 0 11 1 0 7 1 0 62 6 1 13 4 5 95 13 222 98 0 1 147 1 0 199 2 1 24 1 0 235 0 2 128 1 0 66 1 0 24 0 1 25 1 0 17 1 0 13 10 4 35 207 22 10 2 0 15 2 0 5 chain 32317 chrX 156040895 + 139857328 139857785 LTR10F 562 + 0 514 40105 96 0 1 9 0 56 47 29 1 20 0 24 12 4 10 72 1 0 52 0 1 74 2 0 39 chain 28488 chrX 156040895 + 139859819 139860133 AluYa5 310 + 0 310 44146 97 1 0 35 3 0 178 chain 4413 chrX 156040895 + 139902532 139902611 MER21-int 1364 + 1149 1228 88826 28 7 5 27 1 3 16 chain 28235 chrX 156040895 + 139913440 139913840 LTR7 482 + 0 477 44508 35 1 0 66 20 14 17 0 51 41 5 37 46 0 1 169 chain 19178 chrX 156040895 + 139921208 139921565 THE1D 372 + 16 372 57370 37 9 0 21 3 0 6 7 11 22 0 3 23 0 1 26 69 72 134 chain 25986 chrX 156040895 + 139938863 139939287 MER4A1 472 + 0 466 47733 34 3 20 177 95 120 115 chain 477593 chrX 156040895 + 139959243 139965079 L1PA8 5853 + 50 5853 3686 18 18 14 13 49 13 193 35 31 52 5 6 764 4 2 491 1 0 702 0 10 529 1 0 347 1 2 565 0 2 46 5 11 6 1 0 22 0 4 1112 0 1 4 3 1 192 9 10 349 1 0 46 2 0 70 2 1 8 3 1 52 2 1 19 1 0 93 chain 22897 chrX 156040895 + 139978625 139978909 L1PA8A 6298 + 6007 6290 52518 173 5 4 106 chain 274341 chrX 156040895 + 140000618 140004212 L1P3 4156 + 6 4072 7591 129 153 166 20 1 0 85 3 0 258 22 41 217 23 7 558 3 0 269 0 1 56 0 1 444 3 0 11 1 462 610 2 1 321 0 3 401 0 1 4 chain 6931 chrX 156040895 + 140009420 140009546 L1PB 1623 + 223 358 77846 46 3 0 5 0 2 16 18 28 38 chain 6642 chrX 156040895 + 140009546 140009658 L1PREC2 3366 + 330 448 78240 42 1 2 31 1 0 6 9 15 22 chain 51274 chrX 156040895 + 140015253 140015855 L1PA6 6164 + 5555 6162 29139 102 0 9 165 0 1 315 1 0 9 4 0 6 chain 16963 chrX 156040895 + 140016501 140016693 L1PA3long 6157 + 5965 6156 59846 187 1 0 4 chain 5842 chrX 156040895 + 140069457 140069543 MER106A 234 + 107 198 81728 47 3 5 13 0 3 23 chain 151893 chrX 156040895 + 140077595 140079379 HERV17-int 4347 + 2512 4332 12236 30 1 18 209 0 5 202 0 1 538 0 3 366 0 1 28 1 9 312 0 1 97 chain 29107 chrX 156040895 + 140080495 140080821 LTR17 781 + 0 326 43176 326 chain 35346 chrX 156040895 + 140131871 140132294 L1PA6 6164 + 5745 6162 37801 86 0 1 324 7 0 6 chain 3038 chrX 156040895 + 140182939 140182971 MER20 218 + 186 218 99428 32 chain 5252 chrX 156040895 + 140195982 140196048 MER53 195 + 0 66 84435 66 chain 4807 chrX 156040895 + 140203750 140203826 L1MD 993 + 388 465 86657 16 6 7 54 chain 27437 chrX 156040895 + 140225019 140225523 L1PA16 3655 + 3128 3619 45657 73 1 0 28 38 72 101 40 9 106 0 4 56 3 0 11 23 8 7 1 0 16 chain 30095 chrX 156040895 + 140242676 140243054 THE1C 375 + 0 375 41957 261 2 0 89 1 0 25 chain 127606 chrX 156040895 + 140286618 140288095 L1PA5 6144 + 4663 6144 14340 576 0 1 270 0 2 410 0 1 221 chain 33438 chrX 156040895 + 140289419 140289871 MLT2A2 560 + 0 560 39143 180 1 0 122 2 111 87 1 0 5 0 1 54 chain 292392 chrX 156040895 + 140332854 140336724 L1PA6 6164 + 2283 6152 7058 37 8 5 468 0 4 240 10 11 129 2 1 614 0 1 71 22 11 56 14 9 281 3 4 43 1 0 4 0 1 376 42 41 508 2 1 118 0 6 144 1 2 112 4 8 479 5 1 34 0 7 42 chain 27184 chrX 156040895 + 140351375 140351745 THE1C 375 + 0 375 45992 81 1 8 36 3 0 211 9 10 29 chain 28043 chrX 156040895 + 140376333 140376891 L1PA14 3548 + 2948 3485 44794 5 2 0 4 1 0 20 32 28 25 7 8 72 4 0 21 10 7 141 0 1 9 4 13 29 1 0 9 5 1 37 42 36 41 6 0 10 1 0 20 chain 175351 chrX 156040895 + 140379522 140381589 L1PA7 6471 + 4392 6457 10812 1230 0 3 48 5 4 249 2 0 206 3 1 324 chain 3812 chrX 156040895 + 140392183 140392421 ORSL 269 + 70 267 92756 36 133 94 15 33 31 21 chain 205504 chrX 156040895 + 140393443 140396787 L1MA1 4479 + 1235 4190 9521 36 16 14 73 1 0 285 0 2 21 320 19 397 13 11 21 0 1 59 0 3 248 21 0 103 3 0 70 1 0 70 1 0 103 3 1 32 1 0 68 20 24 8 1 0 4 0 1 47 4 3 24 5 3 69 4 3 102 2 0 13 4 0 78 1 0 11 14 10 26 18 13 78 3 0 89 1 13 25 2 0 199 1 0 24 2 0 16 1 0 71 1 0 5 8 9 5 2 0 17 25 5 63 13 6 11 1 0 5 3 0 126 1 0 29 2 0 35 1 0 9 1 0 6 4 2 13 7 0 18 chain 221070 chrX 156040895 + 140398586 140401753 L1PA14 3548 + 337 3485 9014 156 14 1 171 0 9 59 7 0 123 0 4 11 2 1 447 3 0 45 17 21 111 3 0 7 18 12 215 0 1 238 2 0 5 1 3 6 0 5 26 0 1 163 7 26 125 0 6 210 1 0 28 0 2 16 0 1 73 5 1 254 2 0 18 3 1 14 2 0 47 12 8 101 3 1 8 2 0 13 2 0 6 1 0 84 10 9 102 14 9 38 4 2 11 1 0 5 1 0 18 1 0 19 0 2 19 6 0 10 1 0 20 chain 4854 chrX 156040895 + 140406912 140406965 L1PA6 6164 + 5779 5832 86401 53 chain 29287 chrX 156040895 + 140406966 140407296 L1PA6 6164 + 5832 6162 42913 330 chain 15767 chrX 156040895 + 140556363 140556714 L1MA4 2864 + 2495 2809 61328 20 0 1 22 11 9 118 109 75 27 2 0 42 chain 14574 chrX 156040895 + 140598068 140598236 L1PA7 6471 + 6278 6446 62822 168 chain 19778 chrX 156040895 + 140601820 140602052 L1PA5 6144 + 5912 6141 56702 219 3 0 10 chain 16505 chrX 156040895 + 140609272 140609619 MSTA 426 + 0 401 60363 96 24 48 73 77 100 20 5 12 52 chain 524991 chrX 156040895 + 140632924 140639082 L1PA6 6164 + 1 6159 2049 200 0 1 307 2 1 553 1 0 1260 4 5 857 3 0 4 0 1 89 0 2 238 6 4 845 0 4 72 1 2 1547 2 1 160 2 0 5 chain 46869 chrX 156040895 + 140673962 140674646 MER50 708 + 6 708 30710 41 7 11 219 11 8 80 2 1 70 29 30 72 0 5 12 0 3 5 3 0 44 0 12 89 chain 75471 chrX 156040895 + 140682491 140683498 MER11A 1151 + 0 1147 22728 55 0 99 76 1 0 64 4 0 146 0 1 77 0 1 16 8 9 95 0 8 37 5 6 111 0 1 33 17 48 37 0 1 60 9 10 156 chain 51988 chrX 156040895 + 140686056 140687048 L1PA8 5853 + 5185 5853 28877 344 317 0 35 1 0 44 2 0 70 2 1 9 14 13 39 2 1 19 1 0 93 chain 23039 chrX 156040895 + 140722779 140723069 AluSp 311 + 12 311 52306 210 8 16 26 0 1 46 chain 8592 chrX 156040895 + 140740689 140740819 MER45A 178 + 57 170 73466 12 17 0 101 chain 3258 chrX 156040895 + 140764955 140765016 MER96B 391 - 21 79 97392 7 2 0 27 6 5 19 chain 22745 chrX 156040895 + 140770116 140770381 MER41B 635 + 2 267 52765 91 1 0 35 0 1 138 chain 51493 chrX 156040895 + 140776613 140777299 L1PA8 5853 + 5165 5846 29046 54 0 1 162 0 2 141 22 21 18 1 0 46 2 0 68 2 1 8 2 1 51 3 2 19 1 0 86 chain 69372 chrX 156040895 + 140859329 140860436 L1M1 2793 + 728 1798 24147 12 8 4 15 21 16 27 1 0 29 2 0 8 2 1 53 6 4 4 1 0 100 7 6 104 2 1 4 0 1 14 39 39 12 1 0 68 4 0 19 22 17 76 0 1 299 1 0 4 10 0 132 chain 13655 chrX 156040895 + 140866556 140866722 L1PA15 4387 + 67 233 64078 166 chain 55785 chrX 156040895 + 140880196 140881056 L1PBa1 4058 + 10 859 27633 26 1 0 10 5 3 7 1 0 246 31 13 108 7 5 123 0 1 5 1 0 4 0 6 51 72 71 48 1 10 77 1 0 35 chain 100435 chrX 156040895 + 140892432 140893715 HSMAR1 1287 + 1 1287 18244 948 0 2 220 2 1 79 5 7 29 chain 36549 chrX 156040895 + 140901792 140902206 L1PA5 6144 + 5651 6066 37043 159 0 1 255 chain 18412 chrX 156040895 + 140924833 140925182 THE1D 372 + 19 372 58218 35 75 69 62 13 15 24 1 0 95 0 9 44 chain 17186 chrX 156040895 + 141010500 141010722 LTR19A 502 + 0 221 59588 34 4 3 184 chain 45684 chrX 156040895 + 141012171 141013609 LTR19-int 1103 + 43 1060 31218 5 1 0 13 3 1 7 1 0 17 1 0 11 141 0 27 17 0 7 1 0 17 1 0 55 38 7 11 30 0 34 99 68 41 8 0 88 6 1 40 1 0 83 4 0 19 14 0 50 1 0 8 30 18 18 30 33 59 42 5 8 1 0 10 5 2 16 2 0 6 1 0 33 41 16 20 16 3 5 2 0 4 1 0 14 1 0 17 1 0 13 28 17 5 2 0 25 1 0 6 33 16 13 4 2 9 3 1 13 chain 301916 chrX 156040895 + 141018975 141022498 L1PA4 6152 + 2605 6143 6780 578 2 1 62 8 13 183 0 3 891 1 0 406 0 3 465 3 1 632 3 11 289 chain 12778 chrX 156040895 + 141030711 141030893 THE1B 368 + 157 335 65474 17 1 0 41 5 4 87 2 0 29 chain 32466 chrX 156040895 + 141031222 141032791 THE1B-int 1605 + 0 503 39977 284 9 10 24 1104 12 102 24 49 22 chain 3389 chrX 156040895 + 141043341 141043378 MLT2B1 522 + 482 519 96198 37 chain 489971 chrX 156040895 + 141044314 141050237 L1PA5 6144 + 0 6137 3423 120 5 19 929 3 1 40 27 220 469 2 0 44 0 1 470 3 1 571 2 0 614 3 4 172 2 0 174 0 17 475 1 5 519 1 0 148 3 1 145 14 9 126 1 0 369 0 3 471 chain 4683 chrX 156040895 + 141060077 141060130 THE1B 368 + 3 56 87364 53 chain 6817 chrX 156040895 + 141078081 141078209 L1PB4 2604 + 2415 2545 78254 27 17 16 29 12 15 43 chain 23869 chrX 156040895 + 141086951 141087276 MER4A1 472 + 0 345 50997 218 9 30 79 1 0 18 chain 42872 chrX 156040895 + 141104971 141105482 LTR10D 510 + 0 510 32849 231 6 5 274 chain 26917 chrX 156040895 + 141108661 141108951 L1PA5 6144 + 5849 6139 46385 290 chain 39165 chrX 156040895 + 141155232 141156053 LTR10F 562 + 0 562 35238 40 0 2 153 1 60 42 6 2 156 315 0 43 3 2 62 chain 28404 chrX 156040895 + 141157104 141157444 L1PA7 6471 + 6128 6469 44262 122 2 5 204 2 0 10 chain 103838 chrX 156040895 + 141193076 141194622 THE1B-int 1605 + 35 1605 17834 80 54 0 15 0 2 138 5 11 114 0 64 171 3 10 35 1 0 6 0 1 6 15 16 9 2 1 30 0 9 9 16 8 385 0 1 13 7 0 46 0 6 44 19 0 21 37 48 10 0 5 144 0 1 111 chain 22254 chrX 156040895 + 141255554 141255924 THE1D 372 + 0 372 53471 144 46 47 15 17 18 74 0 1 41 1 0 32 chain 107926 chrX 156040895 + 141262082 141263343 L1PA7 6471 + 4352 5608 17336 135 0 1 446 14 7 8 0 1 658 chain 51350 chrX 156040895 + 141296281 141297091 L1MA1 4479 + 3409 4190 29096 104 1 0 202 27 24 16 1 0 71 2 1 17 6 4 11 1 0 70 2 0 18 1 0 5 7 4 122 1 0 28 3 1 29 27 23 13 7 0 18 chain 30847 chrX 156040895 + 141321217 141321567 L1PA7 6471 + 6109 6467 41269 255 0 8 95 chain 19502 chrX 156040895 + 141354244 141354460 L1PA3long 6157 + 5942 6157 57022 68 1 0 147 chain 385941 chrX 156040895 + 141366586 141371732 L1PA8A 6298 + 1430 6290 5385 146 1 0 4 0 1 456 5 4 469 14 7 158 2 1 96 0 2 598 0 3 14 1 2 24 6 10 35 319 0 409 0 1 6 5 6 516 0 23 89 0 6 732 2 1 158 0 1 80 0 3 249 1 0 140 2 0 270 0 1 139 chain 107991 chrX 156040895 + 141380084 141382799 L1PB2 3958 + 1929 3838 17328 11 0 9 12 17 21 41 5 6 38 1034 245 115 0 3 54 2 0 44 0 1 10 6 5 35 0 3 134 3 6 11 0 1 4 16 15 166 5 0 5 1 0 140 0 1 176 30 21 13 1 0 34 14 12 42 18 12 64 8 3 11 4 0 92 1 0 72 6 5 57 1 0 74 3 1 22 1 0 62 chain 480463 chrX 156040895 + 141448406 141454056 L1PA5 6144 + 0 6131 3623 13 0 1 75 0 525 329 25 0 85 1 2 139 9 0 264 1 0 340 9 0 333 0 1 206 4 1 1368 3 1 873 1 0 131 0 1 606 1 0 36 0 2 92 0 1 556 17 17 133 chain 5673 chrX 156040895 + 141454873 141454939 L1PB4 2604 + 2432 2498 82454 66 chain 39808 chrX 156040895 + 141498843 141499392 MER41A 554 + 0 554 34818 92 0 1 83 3 0 9 4 5 21 5 6 101 0 1 70 0 1 57 1 4 103 chain 5549 chrX 156040895 + 141508399 141508473 THE1A 353 + 267 342 83038 12 1 0 44 0 2 17 chain 78125 chrX 156040895 + 141554746 141555825 MER11A 1151 + 2 1146 22067 53 0 99 63 5 6 69 3 0 3 1 0 148 0 1 94 0 1 277 1 27 19 43 0 22 18 0 36 0 1 14 1 2 35 2 0 11 0 1 74 0 1 87 chain 139933 chrX 156040895 + 141568413 141570072 L1PA4 6152 + 934 2596 13102 32 13 14 250 8 7 197 0 1 423 0 2 736 chain 17763 chrX 156040895 + 141597533 141597778 LTR19A 502 + 0 278 58937 34 4 3 184 0 37 12 3 0 8 chain 44677 chrX 156040895 + 141599245 141600699 LTR19-int 1103 + 73 1060 31754 13 1 0 13 141 0 25 17 0 7 1 0 17 1 0 55 39 8 10 30 0 34 99 68 41 8 0 88 6 1 40 1 0 83 4 0 19 14 0 50 1 0 8 1 8 10 19 0 18 30 33 59 34 5 8 59 0 10 5 2 16 2 0 6 1 0 33 41 16 20 16 3 5 2 0 4 1 0 14 1 0 17 1 0 13 28 17 5 2 0 25 1 0 6 33 16 13 4 2 9 3 1 13 chain 76695 chrX 156040895 + 141629003 141630049 MER11C 1089 + 0 1064 22396 217 0 1 29 0 9 61 0 4 63 2 1 161 57 58 86 1 5 4 1 0 38 0 1 125 0 1 56 1 0 144 chain 136560 chrX 156040895 + 141682087 141683744 L1PA5 6144 + 927 2589 13383 32 13 14 459 0 1 418 0 2 150 5 6 580 chain 12388 chrX 156040895 + 141796338 141796477 L1PA6 6164 + 6023 6162 66158 139 chain 3400 chrX 156040895 + 141831050 141831110 MLT1D 503 + 440 501 96062 35 8 9 17 chain 20776 chrX 156040895 + 141867272 141867517 LTR19B 566 + 194 443 55398 80 0 4 165 chain 25681 chrX 156040895 + 141884078 141884529 MLT2A2 560 + 0 560 48199 48 0 1 131 2 0 16 51 49 47 1 99 11 0 11 45 16 31 10 13 0 6 0 1 54 chain 418530 chrX 156040895 + 141884529 141890118 HERVL-int 5654 + 0 5558 4902 217 11 14 219 0 275 193 2 1 206 311 0 83 3 0 170 10 7 94 0 1 257 0 4 197 0 1 271 36 0 498 0 4 111 0 1 115 0 7 685 7 28 88 6 9 1007 1 10 452 1 0 144 5 0 62 1 0 53 1 2 72 chain 3884 chrX 156040895 + 141890154 141890195 MLT2A2 560 + 519 560 92264 41 chain 8569 chrX 156040895 + 141991451 141991588 THE1D-int 1627 + 589 725 73524 101 22 21 14 chain 19632 chrX 156040895 + 142011807 142012042 THE1D-int 1627 + 0 236 56878 13 0 1 222 chain 15637 chrX 156040895 + 142028248 142028448 MSTA-int 1630 + 1431 1630 61487 84 1 0 115 chain 27266 chrX 156040895 + 142061486 142061804 L1PA5 6144 + 5830 6144 45872 55 2 0 254 2 0 5 chain 14064 chrX 156040895 + 142089674 142089829 L1PA4 6152 + 5981 6136 63497 155 chain 10841 chrX 156040895 + 142106728 142107003 L1PA15 4387 + 4051 4314 68795 49 5 4 24 12 11 26 61 55 37 16 13 16 1 0 28 chain 30505 chrX 156040895 + 142110649 142111004 L1PA5 6144 + 5789 6144 41563 355 chain 177066 chrX 156040895 + 142123602 142125598 L1PA5 6144 + 3876 5880 10724 32 0 1 1384 1 8 579 chain 27332 chrX 156040895 + 142150361 142150744 MER50 708 + 50 696 45783 5 2 0 46 9 10 13 0 3 83 0 261 13 1 0 64 0 1 147 chain 92486 chrX 156040895 + 142171138 142172161 L1PA3long 6157 + 4702 5713 19275 330 8 0 617 4 0 64 chain 247228 chrX 156040895 + 142227645 142230807 HERVH-int 3825 + 751 3825 8298 28 1 0 11 10 0 5 47 0 43 0 3 345 6 3 34 15 0 208 9 0 141 5 0 159 0 1 47 0 1 306 4 9 335 19 18 311 0 5 36 11 0 176 18 18 21 1 0 810 chain 31826 chrX 156040895 + 142232626 142233048 LTR7B 505 + 0 495 40474 108 0 10 57 15 77 26 0 2 85 1 0 31 0 1 44 2 1 53 chain 438588 chrX 156040895 + 142266382 142273445 HERVE_a-int 7009 + 140 6990 4597 16 3 0 28 10 8 28 43 0 36 2 0 9 3 1 14 93 80 18 1 0 28 10 8 20 7 6 42 2 1 21 1 0 54 8 7 26 2 1 98 1 0 12 2 1 14 2 1 33 1 0 10 1 0 35 25 23 24 10 9 16 8 7 34 1 0 28 14 12 68 2 1 33 1 0 29 15 13 11 1 0 52 1 0 21 1 0 17 1 0 5 19 14 11 2 1 10 2 1 16 1 0 22 36 30 56 5 3 57 2 1 21 2 1 16 1 0 115 2 1 12 6 5 21 41 37 7 1 0 22 8 7 33 1 0 37 1 0 62 1 0 36 1 0 8 1 0 35 1 0 43 1 0 24 1 0 15 1 0 21 5 4 10 2 1 41 0 1 52 3 2 25 6 4 29 13 8 17 19 16 119 53 47 26 2 1 169 1 0 404 1 0 86 1 0 499 1 0 532 1 0 599 7 5 70 1 0 5 1 2 457 1 2 45 0 2 33 9 0 110 3 2 24 1 0 7 7 6 70 216 210 118 4 5 99 2 0 102 1 0 13 1 0 6 1 0 56 19 16 13 11 10 73 5 3 83 7 6 44 1 0 44 1 0 32 1 0 8 1 0 11 8 7 5 2 0 7 1 0 37 6 5 14 1 0 46 1 0 7 2 1 25 1 8 52 1 0 11 4 0 26 3 0 54 3 1 25 1 0 32 1 0 6 17 14 24 2 0 34 4 2 15 33 25 23 chain 36401 chrX 156040895 + 142273477 142273962 LTR2B 499 + 0 480 37140 15 9 2 211 0 4 209 5 3 36 chain 6188 chrX 156040895 + 142315711 142315784 MLT1E1A 663 + 563 636 80401 73 chain 20950 chrX 156040895 + 142328181 142328559 THE1D 372 + 0 372 55193 50 37 28 102 30 28 30 3 9 80 14 13 32 chain 557866 chrX 156040895 + 142338123 142344150 L1PA2 6032 + 0 6027 252 482 0 1 3078 1 0 2466 chain 68798 chrX 156040895 + 142351432 142352294 LTR12 884 + 0 884 24258 25 1 0 30 0 41 240 24 8 34 2 0 506 chain 66088 chrX 156040895 + 142377445 142378159 L1PA3long 6157 + 5440 6154 24941 714 chain 9149 chrX 156040895 + 142379133 142379241 MSTD 398 + 0 108 72236 108 chain 237445 chrX 156040895 + 142404335 142407460 L1PA8 5853 + 2694 5809 8537 60 13 69 227 0 3 168 2 0 284 105 17 340 12 11 181 0 4 48 1 4 160 1 2 359 5 1 364 3 1 40 0 1 31 0 4 448 1 0 41 1 0 46 1 22 49 1 0 9 2 1 51 2 1 19 2 1 48 chain 8886 chrX 156040895 + 142405095 142405194 L1PA8 5853 - 924 1023 72405 99 chain 29417 chrX 156040895 + 142431149 142431603 LTR7B 505 + 0 498 42712 108 0 10 65 38 14 18 0 26 8 0 31 82 1 0 34 0 1 7 0 2 35 14 13 44 chain 41271 chrX 156040895 + 142433973 142434486 L1PA8 5853 + 5344 5850 33807 220 1 0 46 2 0 69 1 0 11 1 0 50 2 1 19 1 0 90 chain 52229 chrX 156040895 + 142465238 142465864 L1PA7 6471 + 4329 4954 28809 415 4 3 207 chain 68285 chrX 156040895 + 142466155 142466932 L1PA5 6144 + 5367 6144 24388 777 chain 60773 chrX 156040895 + 142469071 142470016 L1PB1 5432 + 4513 5423 26159 115 0 1 175 0 2 6 3 0 290 1 0 15 3 0 21 1 0 8 1 0 10 18 12 52 2 1 16 1 0 18 4 5 21 1 0 15 1 0 4 3 0 5 38 27 14 2 0 24 1 0 21 1 0 11 5 4 7 1 0 10 chain 561615 chrX 156040895 + 142477849 142483853 L1HS 6032 + 5 6016 143 1316 0 3 4650 0 4 38 chain 36735 chrX 156040895 + 142563683 142564121 LTR7 482 + 0 470 36936 193 0 1 36 0 31 104 1 2 17 1 0 86 chain 52430 chrX 156040895 + 142578988 142579683 MER11A 1151 + 413 1151 28747 15 15 16 94 5 6 203 3 4 84 17 48 33 0 9 47 1 0 11 0 1 167 chain 7293 chrX 156040895 + 142675873 142675960 L1P3 4156 + 3 90 76687 87 chain 16603 chrX 156040895 + 142691087 142691317 L1PA16 3655 + 2699 2928 60262 204 9 8 17 chain 18421 chrX 156040895 + 142698034 142698393 L1PB3 3668 + 3248 3566 58206 43 1 0 67 1 0 18 36 15 56 7 8 23 20 4 21 1 0 20 8 6 37 chain 32509 chrX 156040895 + 142718772 142719293 L1PB 1623 + 112 628 39935 5 1 0 48 1 3 20 14 11 68 7 6 125 2 1 15 2 0 73 1 0 79 20 22 40 chain 302821 chrX 156040895 + 142719295 142723146 L1PA7 6471 + 2394 6455 6768 102 0 1 129 0 1 14 45 6 195 1 3 260 9 1 767 3 1 63 4 0 66 2 286 429 0 1 660 0 1 233 0 3 11 49 15 67 0 1 8 0 3 100 11 11 254 1 0 4 0 1 364 chain 168469 chrX 156040895 + 142723168 142725887 L1PB1 5432 + 3040 5413 11190 270 11 12 375 13 19 18 8 0 75 309 0 153 0 1 21 18 20 419 0 1 40 8 12 96 1 4 173 0 23 331 55 11 33 17 12 10 7 5 45 1 0 18 1 0 44 1 0 15 3 0 7 14 5 19 8 5 14 2 0 24 1 0 22 0 3 9 1 0 9 chain 42950 chrX 156040895 + 142848316 142848884 LTR9B 643 + 0 567 32808 201 10 9 219 1 2 61 7 6 69 chain 53013 chrX 156040895 + 142850791 142851659 L1PB1 5432 + 4411 5282 28573 5 1 0 183 6 10 91 3 8 4 1 0 77 17 21 195 1 0 76 63 63 13 6 2 9 2 0 49 25 23 18 7 8 16 chain 20482 chrX 156040895 + 142871356 142871691 THE1B 368 + 16 348 55799 21 6 18 79 4 0 32 7 6 18 2 0 59 1 2 60 6 3 20 6 0 14 chain 36480 chrX 156040895 + 142875058 142875459 L1PA5 6144 + 5737 6138 37089 401 chain 112993 chrX 156040895 + 142883099 142884878 L1PA7 6471 + 4695 6470 16676 23 0 4 189 28 22 22 51 48 91 16 19 51 0 1 38 8 5 128 105 105 130 28 32 19 0 2 78 4 3 191 13 9 318 6 4 86 0 1 156 chain 4151 chrX 156040895 + 142884931 142885012 MLT2B1 522 + 0 89 90459 32 18 26 31 chain 112150 chrX 156040895 + 142898767 142900027 L1PA4 6152 + 4708 5972 16792 590 0 4 670 chain 101345 chrX 156040895 + 142910637 142911779 L1PA3long 6157 + 5025 6157 18149 386 2 1 85 4 0 401 1 0 237 4 0 22 chain 3502 chrX 156040895 + 142916401 142916438 MLT2A1 477 + 440 477 95238 37 chain 450269 chrX 156040895 + 142916439 142922081 HERVL-int 5654 + 1 5647 4387 361 6 7 223 11 17 23 1 0 23 1 0 72 5 7 392 1 0 177 0 1 111 0 1 182 0 1 123 3 1 188 0 2 252 4 0 4 0 1 227 9 0 265 0 2 125 5 17 117 1 0 67 0 1 958 4 0 264 0 1 71 0 1 444 2 0 49 11 12 311 0 2 121 10 4 38 4 0 163 0 1 151 5 8 57 chain 29878 chrX 156040895 + 142922088 142922772 MLT2A1 477 + 0 477 42152 25 7 12 103 0 1 24 5 9 91 0 1 119 273 55 37 chain 197477 chrX 156040895 + 142973619 142975908 L1PA7 6471 + 4151 6450 9795 520 0 4 133 0 2 803 1 5 832 chain 25667 chrX 156040895 + 142987278 142987630 THE1C 375 + 0 361 48218 184 4 5 28 8 16 16 0 1 70 1 0 41 chain 28741 chrX 156040895 + 143002926 143003303 L1PA7 6471 + 6059 6402 43720 191 0 1 61 1 2 79 36 0 9 chain 2571 chrX 156040895 + 143003303 143003332 L1PA7 6471 + 6438 6467 103242 29 chain 28012 chrX 156040895 + 143044462 143044815 THE1A 353 + 0 353 44848 26 0 1 82 2 1 243 chain 17016 chrX 156040895 + 143045113 143045300 L1PA4 6152 + 5948 6135 59789 187 chain 48786 chrX 156040895 + 143110986 143111574 HERVL-int 5654 + 3178 3767 30017 223 0 1 365 chain 40594 chrX 156040895 + 143111866 143112356 MER9a1 513 + 0 513 34230 200 10 11 33 1 23 246 chain 27432 chrX 156040895 + 143128095 143128450 THE1A 353 + 0 353 45659 107 4 3 92 1 0 151 chain 120780 chrX 156040895 + 143154303 143155620 L1PA3long 6157 + 4837 6156 15383 1312 0 2 5 chain 37813 chrX 156040895 + 143182415 143182920 MLT2A2 560 + 1 560 36197 121 0 21 37 1 0 175 0 23 14 0 1 4 8 18 145 chain 46497 chrX 156040895 + 143207601 143208123 L1PA4 6152 + 5620 6143 30845 488 0 1 34 chain 14681 chrX 156040895 + 143235009 143235311 L1M1 2793 + 2162 2463 62693 26 31 32 38 1 0 11 16 20 6 3 0 116 25 23 29 chain 27858 chrX 156040895 + 143247886 143248240 THE1A 353 + 0 353 45095 110 1 0 243 chain 24237 chrX 156040895 + 143254043 143254576 MLT2A1 477 + 0 477 50439 169 4 1 11 2 0 23 0 1 27 10 17 61 173 74 13 1 41 39 chain 17801 chrX 156040895 + 143328372 143328669 THE1B 368 + 0 302 58893 106 7 8 55 1 0 21 17 24 10 10 9 9 2 1 59 chain 23996 chrX 156040895 + 143330656 143330952 L1M1 2793 + 1368 1664 50799 296 chain 207630 chrX 156040895 + 143354309 143356597 L1PA3long 6157 + 3866 6157 9436 593 0 2 1127 0 1 568 chain 19925 chrX 156040895 + 143405368 143405587 L1PA3long 6157 + 5310 5529 56488 219 chain 5611 chrX 156040895 + 143505574 143505641 MSTB 430 + 0 67 82751 67 chain 24138 chrX 156040895 + 143509350 143509889 LTR46 455 + 0 455 50590 29 4 5 125 2 0 5 157 68 124 44 50 49 chain 20214 chrX 156040895 + 143516583 143516853 LTR46-int 301 + 39 299 56124 6 1 0 106 1 0 109 9 1 38 chain 26839 chrX 156040895 + 143516858 143517306 LTR46 455 + 0 455 46488 13 0 2 159 60 59 123 25 32 6 1 0 61 chain 31471 chrX 156040895 + 143610917 143611331 MLT2A1 477 + 15 477 40755 153 5 2 209 0 6 14 0 45 33 chain 12874 chrX 156040895 + 143652827 143653029 L1PA8 5853 + 5646 5853 65296 27 7 6 9 1 0 52 2 1 19 2 1 57 1 10 25 chain 18583 chrX 156040895 + 143719880 143720130 LTR46-int 301 + 58 299 58015 93 1 0 109 9 1 38 chain 331525 chrX 156040895 + 143723176 143729007 L1P3 4156 + 0 4139 6191 251 2 1 70 1 0 87 2 0 220 1 2 189 5 6 397 0 5 185 0 3 461 0 1 33 1692 0 115 1 0 612 3 1 51 3 2 578 19 17 295 0 2 523 11 8 24 chain 20073 chrX 156040895 + 143729180 143729429 L1PA8A 6298 + 6040 6291 56289 192 1 3 56 chain 28241 chrX 156040895 + 143778508 143778899 L1MA3 4352 + 3619 4015 44499 10 2 3 95 7 8 130 0 3 147 chain 25204 chrX 156040895 + 143778900 143779420 LTR4 552 + 0 531 48939 66 21 17 22 62 42 14 2 0 4 0 1 14 34 78 19 2 0 47 19 0 12 0 4 54 7 16 121 chain 54211 chrX 156040895 + 143784549 143785326 L1PA8 5853 + 5033 5816 28151 445 5 6 80 1 0 46 2 0 8 3 7 22 37 43 50 2 1 19 1 0 56 chain 54505 chrX 156040895 + 143802877 143803479 L1PA4 6152 + 5548 6151 28042 16 0 1 586 chain 12829 chrX 156040895 + 143845681 143845822 L1PA6 6164 + 6018 6159 65393 141 chain 33911 chrX 156040895 + 143847180 143847590 L1PA6 6164 + 5755 6162 38779 395 3 0 12 chain 122233 chrX 156040895 + 143874961 143876527 THE1B-int 1605 + 0 1589 15155 426 0 25 139 0 1 4 1 0 84 0 3 6 1 2 266 6 0 633 chain 74773 chrX 156040895 + 143889497 143890521 MER11A 1151 + 0 1147 22898 85 0 91 54 0 4 58 3 0 34 0 2 115 0 1 94 0 1 142 7 9 131 8 41 22 15 0 37 0 1 59 6 7 97 5 6 20 0 4 32 chain 41286 chrX 156040895 + 143935673 143936220 MLT2A2 560 + 0 557 33795 85 0 3 91 0 1 219 18 24 134 chain 5675 chrX 156040895 + 143946047 143946119 MER6 865 + 578 653 82443 41 0 3 31 chain 72586 chrX 156040895 + 143946466 143947382 THE1A-int 1579 + 0 949 23409 104 1 34 367 0 1 78 1 0 365 chain 89437 chrX 156040895 + 144046944 144048317 L1PB2 3958 + 2464 3814 19766 37 16 16 403 9 8 198 5 6 5 1 0 70 3 0 5 1 5 92 2 0 45 8 7 12 14 8 58 2 0 14 5 0 92 6 5 67 1 0 62 1 0 40 41 38 18 1 0 39 chain 61722 chrX 156040895 + 144112962 144113701 L1PA8A 6298 + 5148 5892 25939 345 0 5 394 chain 44179 chrX 156040895 + 144160078 144160665 L1PA11 4918 + 237 825 32029 117 6 5 132 0 1 4 7 7 208 0 2 81 1 0 31 chain 23456 chrX 156040895 + 144180870 144181145 AluY 311 + 0 293 51658 17 0 17 98 0 1 160 chain 8548 chrX 156040895 + 144196919 144197014 L1PA3long 6157 + 3418 3513 73564 95 chain 21717 chrX 156040895 + 144207979 144208282 THE1B-int 1605 + 0 944 54210 232 23 664 48 chain 23423 chrX 156040895 + 144215050 144215407 MLT2A1 477 + 0 378 51720 40 21 33 21 3 0 25 0 1 21 1 2 26 0 4 142 0 1 7 1 0 30 6 12 13 chain 56578 chrX 156040895 + 144261977 144262614 L1PA4 6152 + 5521 6151 27399 483 7 0 147 chain 25378 chrX 156040895 + 144277518 144277808 L1PA2 6032 + 5741 6031 48656 125 5 0 7 0 5 153 chain 5985 chrX 156040895 + 144289629 144290639 MSTA-int 1630 + 449 1594 81146 21 8 7 26 876 1011 65 2 3 12 chain 5139 chrX 156040895 + 144312565 144312627 L1MA4 2864 + 2249 2311 84966 62 chain 26891 chrX 156040895 + 144320336 144320671 L1PA7 6471 + 6136 6469 46420 171 0 7 7 7 0 138 2 0 10 chain 271821 chrX 156040895 + 144323859 144326759 L1HS 6032 + 3129 6029 7668 2900 chain 159346 chrX 156040895 + 144404550 144406303 L1PA3long 6157 + 4411 6142 11788 354 22 0 1377 chain 46484 chrX 156040895 + 144529820 144530444 PRIMA4_LTR 623 + 0 623 30856 51 1 0 85 10 11 112 4 5 144 0 4 67 0 1 117 7 0 26 chain 39611 chrX 156040895 + 144554167 144554760 L1MA2 4263 + 2298 2881 34953 274 6 5 67 1 0 6 0 1 13 0 1 10 0 2 5 2 0 6 20 9 84 23 24 76 chain 19876 chrX 156040895 + 144570851 144571196 THE1B 368 + 0 368 56568 44 0 15 46 30 31 6 0 1 29 1 0 113 36 43 40 chain 20161 chrX 156040895 + 144572769 144573045 THE1B 368 + 0 292 56179 44 0 15 42 10 10 65 1 0 81 0 2 33 chain 31074 chrX 156040895 + 144587245 144587597 L1PA4 6152 + 5795 6152 41067 346 0 5 6 chain 51082 chrX 156040895 + 144619060 144619687 L1P3 4156 + 1825 2467 29197 50 5 15 268 3 8 301 chain 12184 chrX 156040895 + 144633771 144633955 L1MA1 4479 + 3898 4078 66502 49 15 11 120 chain 34056 chrX 156040895 + 144634390 144634869 LTR2B 499 + 9 499 38666 5 1 0 55 2 0 40 5 24 166 3 4 14 1 0 27 8 3 152 chain 12123 chrX 156040895 + 144682455 144682592 L1PA6 6164 + 6023 6160 66621 137 chain 57950 chrX 156040895 + 144738754 144739503 MER4E 760 + 0 752 26980 23 0 1 234 7 0 7 0 7 239 0 1 20 1 2 218 chain 28541 chrX 156040895 + 144761765 144762065 AluYb8 318 + 14 314 44049 300 chain 40526 chrX 156040895 + 144781024 144781493 L1PA5 6144 + 5674 6144 34289 256 0 3 68 0 1 103 1 0 27 3 1 11 chain 140765 chrX 156040895 + 144783450 144785145 LTR12C 1709 + 0 1709 13040 266 1 2 66 0 14 470 0 40 150 41 0 103 1 0 6 2 0 107 0 4 162 1 0 319 chain 10364 chrX 156040895 + 144791088 144791258 L1MA1 4479 + 3153 3321 69680 4 1 0 83 26 25 56 chain 4568 chrX 156040895 + 144846812 144846866 MLT1A 405 + 39 93 87976 54 chain 77037 chrX 156040895 + 144853657 144854690 L1P2 5180 + 6 1039 22307 144 1 0 45 1 0 18 0 3 27 1 0 37 60 64 112 6 5 54 7 6 266 1 0 6 2 1 245 chain 3116 chrX 156040895 + 144865424 144865463 MADE1 96 - 1 40 98646 39 chain 187826 chrX 156040895 + 144925321 144927622 L1PA8A 6298 + 3985 6292 10222 174 13 15 183 0 1 593 4 0 131 0 1 497 2 1 490 0 6 108 0 1 106 chain 98829 chrX 156040895 + 144966856 144967934 L1PA3long 6157 + 5078 6156 18432 1078 chain 7713 chrX 156040895 + 144985459 144985653 L1PB4 2604 + 2063 2337 75589 53 4 8 25 36 36 13 25 101 38 chain 41556 chrX 156040895 + 145020574 145021098 L1P2 5180 + 578 1126 33649 171 4 5 33 1 0 6 1 0 140 0 25 168 chain 2356 chrX 156040895 + 145043217 145043242 L1PA4 6152 + 1602 1627 104422 25 chain 114594 chrX 156040895 + 145043490 145044776 L1PA4 6152 + 4233 5519 16462 1286 chain 20667 chrX 156040895 + 145057107 145057347 7SK 245 + 0 240 55544 240 chain 58332 chrX 156040895 + 145061672 145062499 HSMAR1 1287 + 481 1287 26857 76 5 0 180 19 0 30 3 0 146 32 35 109 0 1 23 0 3 123 5 4 76 chain 22763 chrX 156040895 + 145076657 145076913 L1PA4 6152 + 5882 6138 52731 256 chain 5691 chrX 156040895 + 145098090 145098235 MER53 195 - 14 168 82386 44 64 73 37 chain 39647 chrX 156040895 + 145107149 145107587 L1PA2 6032 + 5594 6032 34929 438 chain 39876 chrX 156040895 + 145117691 145118450 L1MA1 4479 + 3420 4162 34758 51 66 63 85 26 28 88 6 4 16 1 0 74 22 19 5 1 0 6 1 0 26 1 2 60 1 0 5 21 18 108 1 0 24 7 5 35 1 0 9 1 0 11 chain 349459 chrX 156040895 + 145148894 145153970 L1PB1 5432 + 77 5427 5914 173 21 22 188 8 9 51 0 1 64 0 1 19 2 3 57 18 19 73 1 0 10 0 10 209 13 14 27 8 6 35 0 13 315 12 9 145 0 73 21 0 4 8 3 0 159 4 1 208 0 312 159 13 0 105 1 0 242 2 0 66 1 2 83 1 0 13 0 1 66 38 31 123 0 1 4 6 5 378 0 1 116 2 0 444 0 10 191 4 3 55 17 18 11 12 17 62 0 9 57 0 4 13 3 0 81 4 3 94 4 2 216 3 4 77 104 6 5 1 0 17 1 0 10 1 0 5 1 0 10 2 0 3 2 0 9 12 10 42 2 1 16 2 1 43 6 5 15 3 0 12 25 14 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 108568 chrX 156040895 + 145165769 145167142 L1PA7 6471 + 5092 6450 17239 59 9 1 59 3 2 208 0 2 90 16 9 99 1 0 329 0 1 410 0 8 8 8 0 65 1 0 8 chain 14200 chrX 156040895 + 145244509 145244729 MER30 238 + 0 238 63316 109 14 29 58 13 16 26 chain 18831 chrX 156040895 + 145323351 145323567 L1PA5 6144 + 3727 3943 57738 216 chain 3694 chrX 156040895 + 145360426 145360469 L1MB8 1703 + 1325 1368 93647 43 chain 18114 chrX 156040895 + 145385343 145385560 L1PA7 6471 + 6258 6468 58552 126 5 0 77 2 0 7 chain 15135 chrX 156040895 + 145418381 145418729 THE1B 368 + 0 368 62119 28 4 0 19 77 85 12 2 0 25 1 0 9 0 18 4 1 0 9 29 31 128 chain 140430 chrX 156040895 + 145435583 145437141 SVA_D 2077 + 1 2077 13062 12 5 0 12 5 0 739 0 40 104 1 0 9 0 489 671 chain 43405 chrX 156040895 + 145443738 145444266 THE1B-int 1605 + 1071 1599 32499 528 chain 177929 chrX 156040895 + 145462335 145464298 L1PA4 6152 + 4180 6143 10683 1963 chain 280070 chrX 156040895 + 145468175 145472420 MER61-int 3695 + 0 3695 7420 30 4 0 20 1 0 23 479 0 28 3 0 171 1 0 24 0 1 12 1 0 17 9 6 78 16 2 56 23 0 174 9 7 111 0 1 191 0 2 77 1 0 64 0 1 64 0 7 83 0 1 48 27 1 124 0 1 63 0 5 115 0 6 50 8 3 138 1 0 292 7 9 34 1 0 105 1 0 220 4 5 69 2 0 51 3 2 22 4 0 154 1 0 70 0 1 23 1 0 38 4 3 249 3 0 180 3 4 352 1 0 7 chain 35160 chrX 156040895 + 145526886 145527829 L1M1 2793 + 553 1377 37919 12 3 0 5 1 0 8 2 1 12 144 70 41 92 70 30 1 0 29 2 0 8 1 0 54 34 31 32 8 9 38 2 1 128 7 6 13 41 42 56 4 0 17 25 18 93 chain 3638 chrX 156040895 + 145597467 145597505 L1P4b 1366 + 8 46 94113 38 chain 15997 chrX 156040895 + 145597559 145597848 L1PA11 4918 + 4213 4504 61028 117 0 8 30 46 43 54 9 7 16 1 0 16 chain 39533 chrX 156040895 + 145606813 145607250 L1PA4 6152 + 5715 6152 34994 437 chain 77634 chrX 156040895 + 145704544 145705406 L1PA4 6152 + 4474 5337 22173 401 0 1 461 chain 3913 chrX 156040895 + 145716290 145716335 MER61-int 3695 + 3650 3695 92032 45 chain 39646 chrX 156040895 + 145722086 145722631 L1PA11 4918 + 3929 4475 34930 196 1 2 5 1 0 27 1 0 172 7 10 41 26 25 68 chain 21274 chrX 156040895 + 145738844 145739150 THE1C 375 + 0 325 54801 15 2 0 61 9 10 100 0 1 26 5 24 88 chain 29146 chrX 156040895 + 145782789 145783103 AluYb8 318 + 0 313 43125 132 1 0 181 chain 28494 chrX 156040895 + 145785158 145785514 L1PA7 6471 + 6117 6469 44135 180 7 1 158 0 2 11 chain 26800 chrX 156040895 + 145928944 145929284 THE1B 368 + 0 356 46541 15 0 1 19 4 20 118 1 0 183 chain 29832 chrX 156040895 + 145939140 145939500 HERVL-int 5654 + 1 361 42205 360 chain 33145 chrX 156040895 + 145970460 145970865 LTR10F 562 + 0 554 39408 130 0 149 275 chain 118944 chrX 156040895 + 145972632 145974662 HERVIP10FH-int 2884 + 149 1802 15713 34 6 11 14 3 0 169 1 0 92 0 7 112 303 0 134 1 0 312 0 1 173 2 0 172 4 1 7 3 0 9 1 0 9 1 0 61 13 7 125 11 1 13 57 42 11 20 3 43 19 7 42 10 0 3 1 0 15 9 8 15 chain 120618 chrX 156040895 + 145974662 145975947 L1HS 6032 + 4747 6032 15430 1285 chain 35622 chrX 156040895 + 145977287 145977739 LTR10F 562 + 0 560 37649 153 0 69 6 0 3 14 1 37 278 chain 16743 chrX 156040895 + 145977748 145977953 THE1B-int 1605 + 1354 1559 60107 205 chain 16338 chrX 156040895 + 145977999 145978337 THE1B 368 + 0 368 60586 18 17 0 26 74 91 23 1 2 12 1 0 25 2 0 112 0 32 27 chain 4786 chrX 156040895 + 145978380 145978484 L1MA2 4263 + 4008 4105 86765 34 36 29 34 chain 53067 chrX 156040895 + 145980306 145981064 MER4E1 777 + 0 768 28546 25 1 0 135 2 5 31 12 9 31 4 0 177 0 1 19 0 2 104 22 29 111 0 1 16 4 6 49 0 2 15 chain 122068 chrX 156040895 + 146037886 146039452 THE1B-int 1605 + 0 1600 15182 265 6 7 158 1 25 290 0 1 4 1 0 158 22 28 103 0 1 185 1 2 368 0 1 4 chain 19440 chrX 156040895 + 146039457 146039749 THE1B 368 + 0 302 57096 41 1 16 110 20 19 6 2 0 47 2 0 63 chain 55980 chrX 156040895 + 146049736 146050347 SVA_B 1603 + 994 1603 27568 603 2 0 6 chain 11730 chrX 156040895 + 146053640 146053785 MER1A 529 + 306 451 67352 145 chain 19466 chrX 156040895 + 146095340 146095695 L1PA15 4387 + 3976 4327 57077 19 0 1 4 1 0 104 1 0 19 0 2 5 1 0 55 1 0 21 4 0 11 1 0 39 42 46 11 4 2 12 chain 50114 chrX 156040895 + 146112275 146112810 L1PA2 6032 + 4544 5079 29517 535 chain 519054 chrX 156040895 + 146118866 146125343 L1PA6 6164 + 0 6162 2313 328 8 9 50 24 26 646 0 1 163 8 9 214 1 0 647 1 2 230 7 0 864 2 3 25 1 2 708 0 4 397 4 2 527 314 0 264 0 1 793 3 1 240 2 0 6 chain 6504 chrX 156040895 + 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353 + 2 353 47709 59 0 1 12 1 0 35 2 1 143 0 10 90 chain 18127 chrX 156040895 + 146555845 146556089 L1PA8 5853 + 5613 5853 58538 65 2 1 9 1 0 52 2 1 19 1 0 93 chain 4113 chrX 156040895 + 146574472 146574518 LTR10C 591 + 545 591 90688 46 chain 21079 chrX 156040895 + 146579287 146579549 LTR66 600 + 335 600 55029 72 0 6 71 3 0 116 chain 148969 chrX 156040895 + 146617910 146621658 L1P1 4361 + 2627 4328 12421 809 2045 0 715 1 0 154 1 0 23 chain 23988 chrX 156040895 + 146627710 146628112 MER4E 760 + 329 752 50809 23 0 1 4 4 6 19 64 62 58 0 1 26 1 0 4 5 25 194 chain 82549 chrX 156040895 + 146639422 146640578 MER11C 1089 + 0 1068 21110 107 119 0 157 0 3 52 1 18 253 10 11 173 0 8 145 0 2 139 chain 4019 chrX 156040895 + 146664545 146664602 MLT1D 503 + 431 485 91309 11 3 0 43 chain 56605 chrX 156040895 + 146665925 146666660 L1PA8 5853 + 5121 5850 27387 443 1 0 44 2 0 51 1 2 5 1 0 13 1 0 11 1 0 4 0 1 44 3 2 17 6 5 87 chain 2438 chrX 156040895 + 146675093 146675165 MER96B 391 + 286 342 104002 21 8 10 15 18 0 10 chain 31288 chrX 156040895 + 146678777 146679176 MLT2A1 477 + 0 399 40903 86 0 3 79 5 2 9 0 1 24 0 3 178 4 0 14 chain 34401 chrX 156040895 + 146709016 146709407 L1PA4 6152 + 5760 6151 38425 391 chain 426443 chrX 156040895 + 146719065 146724117 L1PA6 6164 + 2 6162 4792 167 4 0 350 1 3 45 1 0 1588 0 1104 14 0 3 917 0 1 4 1 0 70 1 0 4 0 1 1488 5 6 65 2 1 95 1 5 229 chain 75722 chrX 156040895 + 146747403 146748320 L1PA5 6144 + 5222 6144 22652 70 1 2 678 25 25 35 1 0 72 0 5 35 chain 11709 chrX 156040895 + 146785490 146785769 L1PB1 5432 + 5168 5422 67384 35 1 2 14 1 0 10 7 8 44 1 0 15 72 50 24 1 0 22 1 0 12 1 0 18 chain 14401 chrX 156040895 + 146795867 146796040 THE1B-int 1605 + 1418 1591 63035 173 chain 71964 chrX 156040895 + 146861641 146862421 L1PA2 6032 + 5252 6032 23548 780 chain 8961 chrX 156040895 + 146864299 146864410 LTR8 732 + 69 180 72649 111 chain 242811 chrX 156040895 + 146902128 146904773 L1PA2 6032 + 3398 6032 8402 641 2 1 241 6 0 895 4 0 856 chain 80358 chrX 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8 64 13 10 395 6 3 276 5 6 38 chain 27069 chrX 156040895 + 147138029 147138432 LTR7 482 + 0 474 46168 54 23 61 109 5 6 26 5 36 73 1 2 107 chain 49905 chrX 156040895 + 147158551 147159153 L1PA8 5853 + 5053 5681 29601 269 0 27 77 0 2 136 2 1 44 2 0 72 chain 39112 chrX 156040895 + 147190420 147190843 L1PA2 6032 + 5606 6032 35278 138 0 3 285 chain 8562 chrX 156040895 + 147195137 147195244 MSTA 426 + 2 109 73535 107 chain 513508 chrX 156040895 + 147200309 147206474 L1PA6 6164 + 8 6161 2599 229 0 2 11 1 2 138 10 6 122 0 2 47 1 0 120 2 1 362 0 30 217 0 1 1019 23 8 234 2 0 402 0 1 113 7 7 107 0 1 239 0 4 49 4 0 212 0 1 175 3 4 89 1 0 958 0 1 366 0 5 25 6 10 135 38 0 698 chain 7788 chrX 156040895 + 147209392 147209492 MSTA 426 + 2 104 75397 46 0 2 54 chain 8542 chrX 156040895 + 147218379 147218490 MSTA 426 + 2 109 73587 15 4 0 92 chain 141180 chrX 156040895 + 147222583 147224188 L1PA2 6032 + 2652 4216 13013 518 1 0 82 5 0 90 36 1 873 chain 51317 chrX 156040895 + 147244772 147245539 L1PA11 4918 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11 90 1 0 602 8 15 649 14 9 231 7 11 391 43 0 88 3914 0 433 0 1 43 1 0 29 0 2 15 2 0 68 2 1 61 2 1 19 2 1 86 chain 156869 chrX 156040895 + 147410975 147412677 L1PA2 6032 + 4331 6032 11949 1557 1 0 144 chain 11987 chrX 156040895 + 147424448 147424587 L1PA8 5853 + 5381 5520 66859 139 chain 3358 chrX 156040895 + 147424592 147424630 L1PA8 5853 + 5526 5564 96494 38 chain 8355 chrX 156040895 + 147424631 147424746 L1PA8 5853 + 5564 5678 74016 45 2 0 29 1 2 38 chain 4487 chrX 156040895 + 147424762 147424815 L1PA8 5853 + 5690 5743 88406 53 chain 7667 chrX 156040895 + 147424834 147424927 L1PA8 5853 + 5760 5853 75711 93 chain 27262 chrX 156040895 + 147432193 147432590 L1PA16 3655 + 3144 3545 45880 57 1 0 23 9 17 50 18 15 239 chain 43262 chrX 156040895 + 147441903 147442507 MER41B 635 + 0 635 32602 88 1 0 38 2 3 20 10 37 275 8 7 18 6 11 138 chain 8360 chrX 156040895 + 147477735 147477824 L1HS 6032 + 5943 6032 73995 89 chain 46184 chrX 156040895 + 147547999 147548541 L1PA5 6144 + 5598 6139 30969 71 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14 2 0 24 1 0 21 1 0 13 1 0 8 chain 63875 chrX 156040895 + 147772781 147773569 LTR17 781 + 0 781 25437 298 10 0 29 0 1 64 1 0 339 5 8 5 1 0 29 0 1 7 chain 59444 chrX 156040895 + 147798439 147799238 L1PA8 5853 + 5062 5853 26518 188 0 1 248 1 0 16 1 0 49 1 0 44 2 0 70 20 18 48 1 0 11 6 5 93 chain 530230 chrX 156040895 + 147819072 147825563 L1PA7 6471 + 0 6467 1819 124 16 18 247 4 0 23 2 0 6 6 8 189 8 7 76 0 1 87 0 1 291 1 0 318 12 0 213 0 1 17 9 13 346 4 0 154 5 4 33 0 1 275 9 5 227 2 0 799 3 2 37 1 0 485 1 2 9 0 1 61 0 1 872 0 1 548 1 0 120 3 0 126 0 1 380 2 1 328 3 0 8 chain 185648 chrX 156040895 + 147827409 147831186 L1PA10 4194 + 1358 3827 10316 274 1 2 13 0 2 3 1334 0 235 1 5 120 0 4 115 0 1 90 0 4 128 0 1 272 11 12 381 34 39 403 0 1 180 8 9 83 4 5 87 chain 62399 chrX 156040895 + 147844900 147845656 L1PA8 5853 + 5101 5850 25777 463 1 0 44 2 0 71 1 0 9 1 0 52 2 1 19 1 0 90 chain 11910 chrX 156040895 + 147874094 147874255 L1PA8 5853 + 5694 5853 66982 45 3 2 19 1 0 93 chain 26717 chrX 156040895 + 147875128 147875497 THE1C 375 + 0 375 46663 63 1 0 4 11 16 59 0 4 44 1 0 160 1 0 25 chain 24085 chrX 156040895 + 147939921 147940189 AluYa5 310 + 42 310 50671 268 chain 29137 chrX 156040895 + 147963572 147963891 AluYb8 318 + 0 310 43142 118 9 0 192 chain 47109 chrX 156040895 + 147966626 147967278 L1PA16 3655 + 2924 3584 30607 140 10 9 127 8 7 83 2 0 84 0 15 189 3 0 6 chain 488862 chrX 156040895 + 147967859 147973579 L1PA6 6164 + 428 6162 3448 32 1 3 37 11 10 153 0 1 190 0 1 1022 0 1 21 0 1 424 2 1 95 0 1 509 0 4 255 1 2 11 0 4 225 4 0 98 0 1 76 0 2 89 1 0 7 1 0 312 0 1 489 2 6 137 1 0 59 2 1 139 0 1 147 0 1 89 2 1 745 1 0 330 chain 52579 chrX 156040895 + 147997152 147997772 L1PA7 6471 + 5004 5624 28707 620 chain 72112 chrX 156040895 + 147997773 147998600 L1PA7 6471 + 5629 6456 23509 827 chain 38533 chrX 156040895 + 148073335 148073794 L1PA5 6144 + 5683 6143 35684 161 0 1 136 1 6 8 5 0 148 chain 51827 chrX 156040895 + 148131083 148132107 L1PB1 5432 + 4607 5420 28932 11 3 0 177 8 0 10 2 10 23 0 1 8 1 0 256 248 64 53 2 1 15 1 0 45 1 0 15 14 1 29 8 5 15 2 0 24 1 0 21 2 1 12 1 0 16 chain 53510 chrX 156040895 + 148138781 148139493 L1PA11 4918 + 3809 4507 28394 251 9 0 271 1 0 56 8 7 81 2 0 12 2 1 19 chain 13725 chrX 156040895 + 148140838 148140991 L1PA7 6471 + 5672 5825 63983 153 chain 52829 chrX 156040895 + 148141009 148141625 L1PA7 6471 + 5843 6459 28634 616 chain 66206 chrX 156040895 + 148163916 148164658 L1PA5 6144 + 5345 6087 24907 742 chain 358527 chrX 156040895 + 148167137 148173090 L1PA4 6152 + 1459 5521 5817 1220 13 4 877 0 1 127 0 1 627 1885 0 299 0 1 905 chain 12057 chrX 156040895 + 148204482 148204700 MER44A 345 + 94 323 66746 7 0 6 110 52 57 49 chain 92078 chrX 156040895 + 148233903 148235218 L1MA2 4263 + 2709 4043 19327 89 7 22 88 1 2 23 4 0 135 0 2 47 11 12 4 1 0 159 1 8 32 0 2 14 0 1 212 33 32 69 1 0 69 10 11 66 3 0 53 4 5 92 1 0 6 2 1 78 chain 182102 chrX 156040895 + 148239002 148241096 L1PA6 6164 + 4068 6162 10488 246 2 1 107 0 1 76 0 2 145 2 0 1516 chain 33896 chrX 156040895 + 148267634 148268051 L1PA8 5853 + 4988 5406 38788 18 0 1 399 chain 234918 chrX 156040895 + 148275057 148278495 L1PA13 3608 + 90 3488 8603 19 6 4 23 5 2 26 2 1 12 3 0 24 28 17 71 8 6 118 1 0 15 1 0 17 2 0 15 7 3 13 1 0 22 10 8 10 2 0 19 10 9 87 2 0 74 7 6 4 0 1 186 1 0 198 0 1 181 0 1 14 8 14 164 0 1 36 22 26 120 0 1 105 0 8 258 0 2 85 0 1 234 3 4 52 25 10 221 5 6 182 0 4 137 10 13 147 1 0 32 1 0 114 3 1 61 1 0 55 13 5 48 19 13 9 1 0 22 chain 124690 chrX 156040895 + 148360297 148361683 L1PA3long 6157 + 4768 6157 14748 50 0 1 495 0 1 699 0 1 142 chain 44480 chrX 156040895 + 148368519 148369189 L1PB2 3958 + 3154 3818 31838 79 1 6 65 5 3 56 1 0 11 4 0 65 2 0 12 5 0 21 0 9 49 18 19 4 0 1 5 3 0 58 1 0 64 2 1 67 2 0 25 2 1 43 chain 4198 chrX 156040895 + 148409381 148409511 L1MA8 2339 + 2160 2279 90137 36 6 0 12 26 25 14 10 9 9 3 0 14 chain 19413 chrX 156040895 + 148484787 148485133 L1PB1 5432 + 5105 5419 57118 9 1 0 20 1 0 12 1 0 10 6 2 9 2 0 53 2 1 16 1 0 43 1 0 16 14 1 28 2 0 7 1 0 14 2 0 24 1 0 21 1 0 13 1 0 9 0 1 5 chain 47439 chrX 156040895 + 148560136 148560682 L1PA7 6471 + 5049 5609 30492 171 0 14 375 chain 36514 chrX 156040895 + 148693909 148694326 L1PA3long 6157 + 5737 6157 37073 270 0 2 40 0 1 107 chain 90928 chrX 156040895 + 148731599 148732588 L1PA2 6032 + 5044 6032 19518 732 1 0 256 chain 9125 chrX 156040895 + 148772905 148773037 L1PA8A 6298 + 6136 6291 72295 45 1 16 15 2 10 69 chain 56028 chrX 156040895 + 148906391 148907153 LTR17 781 + 0 781 27554 59 1 0 97 1 0 22 4 3 146 1 0 356 5 27 8 0 1 9 9 10 17 14 13 13 chain 12238 chrX 156040895 + 148908760 148908928 MER58B 340 + 91 263 66401 9 0 1 19 7 10 133 chain 186538 chrX 156040895 + 149087670 149089774 L1PA5 6144 + 3850 5962 10272 932 0 1 145 0 4 82 0 1 196 0 1 4 1 0 727 0 2 17 chain 8870 chrX 156040895 + 149101913 149102110 Tigger16b 258 + 39 232 72835 20 58 55 70 8 7 41 chain 188954 chrX 156040895 + 149110021 149112402 L1PA8A 6298 + 2529 6291 10164 103 2 0 5 1 3 596 0 13 225 0 1 91 0 1 307 1 2 12 0 1352 116 2 0 17 0 3 19 2 1 92 0 3 232 0 6 478 13 17 67 chain 18257 chrX 156040895 + 149123050 149123264 L1PA5 6144 + 5930 6144 58403 214 chain 356793 chrX 156040895 + 149192874 149197052 L1PA5 6144 + 1952 6130 5840 283 6 7 137 0 4 383 7 11 389 10 12 215 6 1 210 2 0 69 3 0 1243 0 1 225 4 1 180 0 1 806 chain 111401 chrX 156040895 + 149265662 149266919 L1PA5 6144 + 4876 6144 16890 151 1 0 1090 0 12 15 chain 8078 chrX 156040895 + 149277410 149277505 L1PA7 6471 + 6364 6459 74677 95 chain 5881 chrX 156040895 + 149312234 149312314 MADE1 96 + 0 96 81551 33 3 19 44 chain 29776 chrX 156040895 + 149315605 149316026 LTR7B 505 + 0 497 42267 105 0 10 60 0 38 12 3 27 26 0 2 42 0 1 42 1 0 2 0 2 19 4 5 48 14 13 43 chain 293773 chrX 156040895 + 149316078 149319695 HERVH-int 3825 + 44 3825 7020 488 5 0 38 126 0 10 1 0 24 1 52 42 2 1 80 5 4 640 0 1 5 9 0 29 0 2 10 1 0 215 4 31 24 0 2 276 0 10 1042 9 11 22 0 1 16 8 218 260 0 2 225 chain 1795 chrX 156040895 + 149316647 149316691 HERVH-int 3825 + 488 532 83577 44 chain 1164 chrX 156040895 + 149316691 149316722 HERVH-int 3825 + 471 500 86865 18 2 0 11 chain 2931 chrX 156040895 + 149320382 149320415 LTR7Y 441 + 408 441 100575 33 chain 57508 chrX 156040895 + 149320915 149321674 MER4E1 777 + 0 770 27102 24 2 0 139 3 0 8 0 3 70 1 2 11 1 11 24 0 3 243 3 0 12 13 15 205 chain 542087 chrX 156040895 + 149334009 149340023 L1PA3long 6157 + 0 6156 1199 153 3 11 550 0 1 61 0 128 245 7 9 2011 1 0 991 0 3 1143 0 1 849 chain 24248 chrX 156040895 + 149348190 149348590 LTR39 781 + 0 496 50421 16 33 36 134 29 121 89 8 9 91 chain 131040 chrX 156040895 + 149348628 149350089 L1PA4 6152 + 4689 6152 13923 406 0 1 801 0 1 254 chain 23697 chrX 156040895 + 149356727 149357093 THE1B 368 + 0 368 51280 169 2 0 17 21 28 16 1 0 10 1 0 66 14 13 49 chain 111284 chrX 156040895 + 149357093 149358726 THE1B-int 1605 + 0 1605 16909 15 2 3 97 59 0 158 1 7 12 1 2 92 11 75 248 1 0 34 0 1 56 33 0 52 15 8 436 18 15 92 1 2 88 0 1 111 chain 27467 chrX 156040895 + 149368807 149369200 THE1C 375 + 0 375 45614 14 2 0 33 15 2 4 1 0 32 0 1 99 3 0 190 chain 49060 chrX 156040895 + 149382457 149383005 L1PA3long 6157 + 5608 6156 29927 548 chain 3982 chrX 156040895 + 149397763 149397913 MER3 215 - 8 164 91567 35 91 97 24 chain 84991 chrX 156040895 + 149400200 149401494 L1PB1 5432 + 4204 5422 20619 296 18 12 20 9 1 91 17 13 175 3 1 184 1 0 57 0 1 7 1 0 23 4 0 9 19 9 12 10 0 19 1 0 10 1 0 14 4 0 10 2 0 68 1 0 45 1 0 15 1 0 4 22 11 16 3 1 4 1 0 14 2 0 24 1 0 22 1 0 12 1 0 13 1 0 5 chain 145776 chrX 156040895 + 149420156 149421792 SVA_F 1814 + 0 1812 12630 582 0 1 28 0 37 239 0 1 13 0 64 50 0 78 704 3 0 7 2 0 8 chain 538499 chrX 156040895 + 149435837 149441821 L1PA3long 6157 + 6 6149 1423 63 0 1 65 5 20 100 0 1 311 0 4 206 1 129 1142 0 1 158 0 2 2481 0 1 228 0 6 1224 chain 4463 chrX 156040895 + 149466762 149466820 MLT2B1 522 + 463 520 88540 16 1 0 41 chain 8763 chrX 156040895 + 149470458 149470630 MER53 195 - 7 171 73072 7 10 0 52 30 32 73 chain 9039 chrX 156040895 + 149498619 149498997 L1MB7 1623 + 1050 1429 72472 61 19 20 39 39 38 15 170 171 35 chain 46851 chrX 156040895 + 149553831 149554442 MER51C 639 + 6 613 30714 182 2 1 94 22 19 311 chain 93261 chrX 156040895 + 149563967 149565025 MER11C 1089 + 0 1072 19150 225 0 5 369 0 1 209 0 8 255 chain 3239 chrX 156040895 + 149668325 149668363 L1MC2 1988 + 1395 1433 97581 38 chain 21253 chrX 156040895 + 149684583 149684915 THE1C 375 + 0 335 54820 77 5 6 41 3 0 57 0 1 9 1 0 12 10 13 67 9 11 41 chain 22924 chrX 156040895 + 149692709 149693033 THE1B 368 + 1 340 52478 43 0 15 107 5 4 30 13 9 97 8 13 21 chain 283504 chrX 156040895 + 149722676 149727208 HERVK22-int 3844 + 0 3844 7328 40 3 0 1469 14 14 691 1 0 56 2 1 25 1 0 57 0 1 116 1 0 13 0 1 91 1 2 470 1 0 71 1 0 7 1 0 17 1 0 36 1 0 20 2 0 39 15 10 41 2 0 18 26 15 10 2 0 7 2 0 5 2 0 3 2 0 10 1 0 7 65 48 18 12 8 28 1 0 5 818 192 88 6 5 68 1 0 21 chain 120056 chrX 156040895 + 149758396 149759946 LTR12C 1709 + 0 1709 15530 139 3 13 104 7 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0 2 18 6 8 240 10 8 509 0 1 130 2 0 235 4 6 81 1 0 210 chain 31125 chrX 156040895 + 149836617 149837082 LTR10F 562 + 0 562 41040 32 1 5 116 1 29 47 0 24 11 33 39 76 4 7 57 0 32 87 chain 45089 chrX 156040895 + 149850960 149851771 L1PB1 5432 + 4741 5420 31533 359 6 5 9 103 0 24 1 0 6 30 23 53 2 1 16 1 0 43 1 0 16 4 0 16 8 0 15 26 24 19 1 0 21 1 0 13 1 0 16 chain 30782 chrX 156040895 + 149864120 149864657 L1PA15 4387 + 3840 4366 41318 50 2 0 36 7 6 74 1 0 85 14 13 26 1 0 48 2 7 17 4 0 15 1 0 24 34 32 41 3 1 41 1 0 10 chain 71312 chrX 156040895 + 149872582 149873620 L1PA13 3608 + 2438 3468 23691 108 6 8 63 15 17 113 0 1 178 4 0 27 1 2 52 7 11 114 1 0 23 5 4 112 6 4 61 1 0 20 2 0 35 1 0 5 2 0 39 8 6 7 2 0 20 chain 29943 chrX 156040895 + 149906399 149906747 L1PA6 6164 + 5819 6162 42109 336 5 0 7 chain 45636 chrX 156040895 + 149913982 149914689 L1PA7 6471 + 5735 6470 31243 49 12 29 23 5 13 34 55 57 32 40 40 127 0 1 330 chain 76402 chrX 156040895 + 149926118 149926994 MER11D 897 + 0 897 22461 593 1 24 92 2 0 188 chain 50657 chrX 156040895 + 150022066 150022611 L1PA2 6032 + 5321 5866 29323 545 chain 12928 chrX 156040895 + 150034036 150034180 L1PA5 6144 + 5997 6141 65205 144 chain 4804 chrX 156040895 + 150037793 150037860 MER74A 558 + 393 455 86679 40 5 0 22 chain 404947 chrX 156040895 + 150121550 150126948 L1PB1 5432 + 59 5399 5094 226 1 0 40 1 0 204 0 8 71 1 0 645 0 3 139 1 0 8 2 0 6 42 40 36 11 2 1005 0 1 48 0 4 297 8 0 498 1 2 167 0 1 213 43 12 217 4 5 67 11 3 35 0 5 238 0 1 158 12 17 87 0 4 54 1 0 8 9 0 64 2 1 98 1 0 6 0 1 30 28 9 4 1 0 190 16 16 50 38 59 6 2 0 9 0 3 40 2 1 16 1 0 43 1 0 16 1 0 4 25 17 10 8 5 14 2 0 24 1 0 21 1 0 8 chain 158008 chrX 156040895 + 150133099 150134814 L1PA2 6032 + 2605 4320 11877 1715 chain 71793 chrX 156040895 + 150250445 150251241 L1PA3long 6157 + 5364 6157 23597 429 3 0 364 chain 4059 chrX 156040895 + 150266939 150267034 MADE1 96 - 0 96 91020 23 35 36 37 chain 26796 chrX 156040895 + 150285198 150285507 AluYb8 318 + 10 314 46546 53 2 0 244 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156040895 + 150816576 150817207 L1PA3long 6157 + 5526 6157 27018 631 chain 14938 chrX 156040895 + 150861542 150862065 L1P3 4156 + 3600 3802 62336 64 331 0 97 0 8 6 1 3 24 chain 3672 chrX 156040895 + 150872609 150872651 MER66B 489 + 295 337 93803 42 chain 25653 chrX 156040895 + 150875627 150875980 THE1B 368 + 0 368 48237 44 9 24 101 7 6 73 8 9 111 chain 8414 chrX 156040895 + 150886282 150886511 Tigger3a 397 + 33 265 73867 37 63 61 28 16 26 38 1 0 24 9 5 13 chain 4692 chrX 156040895 + 150889816 150889870 MER41A 554 + 405 459 87313 54 chain 22648 chrX 156040895 + 150891930 150892233 AluSp 311 + 1 289 52905 19 12 4 108 2 0 150 5 0 7 chain 3532 chrX 156040895 + 150916655 150916841 MIR 256 + 14 231 94998 22 130 161 34 chain 24696 chrX 156040895 + 151017088 151017372 AluSp 311 + 3 287 49742 284 chain 10105 chrX 156040895 + 151022485 151022710 Tigger3a 397 + 139 364 70188 114 1 31 11 31 1 11 1 0 4 32 33 20 chain 21105 chrX 156040895 + 151044774 151045126 MSTA 426 + 28 426 55004 80 20 48 48 38 36 56 1 21 109 chain 68233 chrX 156040895 + 151066445 151067206 L1PA4 6152 + 5201 5969 24396 103 0 4 513 0 3 145 chain 11508 chrX 156040895 + 151085764 151085940 THE1C 375 + 0 185 67733 15 2 0 32 0 6 17 15 16 49 0 4 46 chain 39277 chrX 156040895 + 151099428 151099945 MLT2A2 560 + 0 560 35165 183 1 0 125 6 38 61 0 11 116 0 1 25 chain 9414 chrX 156040895 + 151104936 151105142 MER20 218 + 22 217 71668 10 7 0 35 58 54 36 1 0 6 0 1 53 chain 329422 chrX 156040895 + 151120983 151124783 L1PA6 6164 + 2347 6162 6223 764 0 2 187 0 1 267 0 1 133 1 2 945 1 0 269 4 10 115 0 1 269 1 5 844 chain 43020 chrX 156040895 + 151125374 151125938 L1PA8 5853 + 5294 5853 32761 4 0 1 265 1 0 45 2 0 55 16 15 61 2 1 19 2 1 92 chain 2711 chrX 156040895 + 151125985 151126017 L1PA8 5853 + 5532 5564 102276 32 chain 3830 chrX 156040895 + 151126018 151126062 L1PA8 5853 + 5564 5608 92644 44 chain 7888 chrX 156040895 + 151126064 151126186 L1PA8 5853 + 5608 5740 75154 70 12 10 19 0 12 21 chain 5904 chrX 156040895 + 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151330320 151336351 L1HS 6032 + 0 6031 125 170 0 1 5847 1 0 13 chain 42945 chrX 156040895 + 151356308 151356864 L1PA8 5853 + 5296 5845 32811 268 1 0 46 2 0 68 2 1 14 1 0 39 10 9 19 1 0 85 chain 18156 chrX 156040895 + 151368860 151369075 L1P1 4361 + 4112 4325 58505 38 1 0 155 1 0 20 chain 7937 chrX 156040895 + 151376018 151376120 L1MD2 1676 + 1328 1430 75033 102 chain 9161 chrX 156040895 + 151391034 151391158 MER67C 710 + 579 706 72207 42 1 4 81 chain 26503 chrX 156040895 + 151440965 151441332 THE1B 368 + 0 368 46975 63 11 15 72 9 7 16 2 1 194 chain 29724 chrX 156040895 + 151441986 151442670 MLT2A1 477 + 8 385 42338 125 0 1 35 4 1 9 0 1 25 0 1 57 1 0 14 306 0 108 chain 50584 chrX 156040895 + 151443233 151443890 THE1-int 844 + 13 665 29355 7 1 0 21 2 1 13 1 0 51 1 0 19 1 0 540 chain 13819 chrX 156040895 + 151457890 151458089 L1PB1 5432 + 4946 5142 63846 157 13 11 24 1 0 4 chain 4464 chrX 156040895 + 151490199 151490257 MER2 342 + 152 211 88528 12 0 1 46 chain 207276 chrX 156040895 + 151546862 151549757 L1PA10 4194 + 252 3083 9450 19 3 1 14 1 0 8 39 32 10 12 10 7 1 0 10 5 4 7 5 0 6 1 0 15 7 0 12 4 0 65 44 42 6 0 3 253 36 8 138 12 0 531 4 5 308 0 1 165 2 1 289 0 4 403 0 1 453 chain 23326 chrX 156040895 + 151638163 151638447 L1PA6 6164 + 5873 6162 51888 70 0 1 206 0 4 8 chain 44383 chrX 156040895 + 151668421 151668911 L1PA4 6152 + 3201 3691 31893 490 chain 29239 chrX 156040895 + 151758615 151758926 AluYa5 310 + 0 310 42982 132 1 0 178 chain 126177 chrX 156040895 + 151768887 151770655 L1PA11 4918 + 2800 4578 14527 117 0 1 66 0 1 167 0 1 55 0 1 4 1 0 229 7 15 109 0 1 46 1 13 40 1 0 30 0 1 64 0 1 57 0 2 5 2 0 38 2 0 5 8 10 431 0 4 17 4 5 57 2 1 54 0 1 4 1 0 19 2 0 16 1 0 20 21 12 10 13 9 15 1 0 13 2 0 11 chain 3300 chrX 156040895 + 151788695 151788734 MER3 215 + 35 74 97008 39 chain 15503 chrX 156040895 + 151876466 151876667 MER4A1 472 + 0 203 61648 15 0 2 4 0 1 11 1 0 170 chain 99399 chrX 156040895 + 151881867 151883038 L1PA6 6164 + 4985 6160 18363 333 0 4 668 28 30 134 2 0 6 chain 156833 chrX 156040895 + 151884631 151886666 MER4-int 2692 + 542 2586 11952 13 1 20 148 5 3 68 11 1 96 6 0 19 1 0 9 0 2 477 11 20 53 0 1 32 9 4 274 1 0 488 0 1 15 0 1 195 0 1 103 chain 92531 chrX 156040895 + 152002303 152003375 MER11C 1089 + 1 1073 19271 682 3 2 56 0 1 331 chain 4082 chrX 156040895 + 152013299 152013407 Tigger4a 237 + 3 130 90888 32 42 61 34 chain 8917 chrX 156040895 + 152043747 152047237 L1PA7 6471 + 6137 6461 72747 98 3166 0 226 chain 7441 chrX 156040895 + 152056481 152056574 L1PA11 4918 + 4394 4484 76269 12 1 0 69 2 0 9 chain 151488 chrX 156040895 + 152058357 152060022 L1PA4 6152 + 3728 5393 12253 1665 chain 31354 chrX 156040895 + 152082605 152083055 L1PA16 3655 + 3159 3592 40844 45 2 1 81 20 18 274 3 0 7 11 0 7 chain 13033 chrX 156040895 + 152088069 152088221 L1P1 4361 + 3810 3966 65061 65 0 3 56 0 1 31 chain 80326 chrX 156040895 + 152129618 152130583 LTR5_Hs 974 + 0 974 21569 288 0 1 438 0 3 90 7 14 37 2 0 103 chain 30751 chrX 156040895 + 152181487 152181831 L1PA3long 6157 + 5813 6157 41350 344 chain 104211 chrX 156040895 + 152226392 152227541 L1PA3long 6157 + 5006 6156 17797 520 0 1 629 chain 19013 chrX 156040895 + 152233366 152233576 L1PA3long 6157 + 5316 5526 57539 210 chain 56367 chrX 156040895 + 152233576 152234206 L1PA3long 6157 + 5527 6157 27466 630 chain 7186 chrX 156040895 + 152270868 152270961 THE1C-int 1605 + 114 207 76989 93 chain 57260 chrX 156040895 + 152303249 152303976 L1PA8 5853 + 5130 5853 27175 272 1 2 88 0 1 73 1 0 44 2 0 66 4 3 9 1 0 11 8 9 32 2 1 19 1 0 93 chain 327401 chrX 156040895 + 152316191 152320707 L1PB1 5432 + 637 5418 6260 760 0 6 9 1 2 105 1 3 64 3 42 52 0 1 231 1 3 500 6 9 50 2 5 19 5 0 4 0 1 317 2 0 13 1 0 8 8 0 400 23 0 49 5 16 160 14 18 52 27 286 543 26 27 60 1 0 27 25 28 50 1 0 46 6 7 4 0 1 13 3 0 77 0 2 42 0 1 4 1 0 58 6 8 278 13 10 5 1 0 29 5 4 11 14 0 5 0 8 50 2 1 16 2 1 43 1 0 15 2 0 6 15 6 19 1 0 4 2 0 15 2 0 24 1 0 21 1 0 13 1 0 14 chain 484027 chrX 156040895 + 152325241 152330860 L1PA5 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6466 29581 518 2 3 66 6 0 11 chain 80536 chrX 156040895 + 152439896 152440857 L1PA7 6471 + 5333 6304 21525 281 0 3 228 0 1 176 12 18 264 chain 89091 chrX 156040895 + 152455237 152456528 L1MA2 4263 + 1982 4105 19842 211 1 0 4 0 1 36 4 6 253 1 4 31 0 848 208 6 2 14 9 7 55 14 13 117 17 14 74 2 0 5 2 0 173 15 8 39 chain 3634 chrX 156040895 + 152458543 152458614 L1MB3 1562 + 1482 1552 94144 23 19 18 29 chain 7728 chrX 156040895 + 152463860 152463943 L1PA7 6471 + 5898 5981 75538 83 chain 42171 chrX 156040895 + 152463943 152464429 L1PA7 6471 + 5982 6467 33266 389 1 0 96 chain 356003 chrX 156040895 + 152471148 152476067 L1PB1 5432 + 587 5420 5847 14 2 1 10 0 1 358 2 1 5 0 1 241 0 1 5 4 5 154 0 3 8 1 0 7 8 1 10 0 1 130 0 4 152 1 9 102 1 0 35 0 4 150 0 3 424 0 1 63 13 0 104 0 1 240 1 0 6 2 0 44 0 3 75 0 1 356 10 11 235 14 6 150 47 12 213 9 8 205 1 0 9 0 1 453 27 0 476 18 16 22 1 0 9 10 11 9 2 0 53 2 1 16 1 0 44 2 1 14 1 0 4 45 32 14 2 0 16 9 0 7 3 11 12 0 3 8 2 1 16 chain 33953 chrX 156040895 + 152491032 152491447 THE1C-int 1605 + 0 415 38744 415 chain 54632 chrX 156040895 + 152492925 152493628 L1PB1 5432 + 3316 4017 28001 230 0 3 48 0 1 216 19 12 133 7 8 50 chain 26174 chrX 156040895 + 152501922 152502258 L1PA5 6144 + 4994 5294 47467 65 36 0 235 chain 75953 chrX 156040895 + 152502258 152503098 L1PA5 6144 + 5295 6135 22593 840 chain 30156 chrX 156040895 + 152515753 152516098 L1PA7 6471 + 6124 6470 41883 191 0 1 154 chain 23745 chrX 156040895 + 152519260 152519555 AluSg7 307 + 9 305 51207 122 1 2 172 chain 59596 chrX 156040895 + 152522559 152523292 L1PA8A 6298 + 5559 6291 26485 20 0 1 596 1 0 16 1 0 99 chain 552109 chrX 156040895 + 152544525 152550550 L1PA2 6032 + 7 6032 601 250 1 0 4202 0 1 1572 chain 25678 chrX 156040895 + 152561900 152562200 L1PA7 6471 + 6172 6466 48204 282 6 0 12 chain 540018 chrX 156040895 + 152581914 152587990 L1PA4 6152 + 1 6088 1341 126 0 14 589 1 2 1298 1 0 1128 0 1 667 3 1 1474 3 0 700 0 1 86 chain 26097 chrX 156040895 + 152672002 152672284 L1PA2 6032 + 5750 6032 47578 282 chain 97780 chrX 156040895 + 152684457 152686404 MER41-int 2638 + 1363 2636 18551 307 1 0 151 10 9 4 0 1 41 2 0 25 0 1 4 675 7 119 4 0 273 1 0 147 0 1 183 chain 38660 chrX 156040895 + 152686413 152687265 MER41B 635 + 0 554 35599 117 9 10 128 0 12 190 345 34 63 chain 6160 chrX 156040895 + 152689070 152689177 MLT1A 405 + 36 144 80487 33 1 3 40 14 13 19 chain 9855 chrX 156040895 + 152692499 152692619 THE1B-int 1605 + 1485 1605 70711 120 chain 24951 chrX 156040895 + 152692619 152692966 THE1B 368 + 0 346 49358 13 2 0 24 0 5 130 5 4 16 4 0 143 0 1 10 chain 4273 chrX 156040895 + 152695851 152695901 L1MC3 1789 + 485 535 89676 50 chain 4273 chrX 156040895 + 152711513 152711563 L1MC3 1789 + 485 535 89675 50 chain 4273 chrX 156040895 + 152730713 152730763 L1MC3 1789 + 485 535 89674 50 chain 29369 chrX 156040895 + 152748981 152749293 AluYa5 310 + 0 310 42786 132 2 0 178 chain 30389 chrX 156040895 + 152794738 152795126 MSTA 426 + 16 408 41684 189 2 0 9 3 5 55 0 4 130 chain 16403 chrX 156040895 + 152888070 152888275 MER47A 366 + 97 302 60513 205 chain 9767 chrX 156040895 + 152996314 152996503 MER92B 628 + 0 188 70895 59 10 11 35 7 8 21 16 14 26 1 0 14 chain 21456 chrX 156040895 + 153002234 153002551 THE1B 368 + 0 368 54573 13 2 0 24 0 5 65 1 71 14 4 0 16 19 1 159 chain 284079 chrX 156040895 + 153015563 153018740 L1PA5 6144 + 2950 6140 7317 106 1 0 1564 0 1 5 1 0 395 0 2 270 0 5 588 1 7 4 0 1 242 chain 73502 chrX 156040895 + 153049214 153050198 THE1C-int 1605 + 604 1591 23217 110 3 0 27 5 14 107 0 1 71 0 3 73 5 0 90 18 17 201 1 0 273 chain 30022 chrX 156040895 + 153064397 153064799 MLT2A1 477 + 0 407 42030 15 0 4 148 7 4 8 0 1 24 0 1 96 1 5 18 1 0 69 1 0 14 chain 49856 chrX 156040895 + 153104686 153105319 THE1B-int 1605 + 0 659 29618 305 6 7 120 10 35 192 chain 88049 chrX 156040895 + 153165472 153166529 MER11C 1089 + 0 1051 20038 563 17 16 195 9 1 98 0 2 124 0 1 51 chain 104374 chrX 156040895 + 153167455 153168593 L1PA3long 6157 + 5013 6150 17773 748 1 0 389 chain 52103 chrX 156040895 + 153332129 153332861 L1PA16 3655 + 2791 3569 28842 36 6 20 22 0 37 10 2 1 74 1 0 5 1 2 204 1 0 87 14 12 115 1 0 153 chain 20461 chrX 156040895 + 153356470 153356818 THE1B 368 + 0 367 55820 40 0 15 27 23 18 64 1 0 34 46 56 113 chain 49563 chrX 156040895 + 153356870 153357462 LTR66 600 + 0 600 29746 149 1 8 256 0 4 62 3 0 121 chain 60112 chrX 156040895 + 153358564 153359281 THE1B-int 1605 + 875 1593 26339 99 0 1 618 chain 53348 chrX 156040895 + 153447939 153448548 L1PA5 6144 + 5530 6138 28457 266 6 5 337 chain 7720 chrX 156040895 + 153461954 153462055 MER4D1 891 + 727 828 75565 30 0 1 64 1 0 6 chain 18970 chrX 156040895 + 153666248 153666535 7SLRNA 320 + 20 316 57582 25 10 17 72 1 9 99 11 6 50 1 0 18 chain 34313 chrX 156040895 + 153676015 153676495 LTR10E 629 + 0 475 38485 61 0 1 96 19 16 118 8 7 23 5 4 53 1 0 96 chain 30464 chrX 156040895 + 153682522 153682980 LTR7B 505 + 0 496 41610 108 0 10 53 43 24 5 1 0 15 0 26 8 1 23 6 0 2 82 1 0 77 16 15 42 chain 9920 chrX 156040895 + 153754629 153754754 L1MA9 1812 + 22 141 70576 9 4 0 38 2 0 72 chain 10531 chrX 156040895 + 153845534 153845697 MER67C 710 + 547 710 69362 20 15 14 47 1 2 80 chain 42693 chrX 156040895 + 153940489 153941344 MER41A 554 + 0 554 32948 242 4 23 115 316 0 141 4 0 33 chain 29507 chrX 156040895 + 153996142 153996548 MER4A1 472 + 17 472 42598 218 19 43 101 1 26 67 chain 24464 chrX 156040895 + 154077326 154077785 L1PB1 5432 + 5002 5427 50088 79 24 27 8 5 0 22 1 0 7 2 1 12 5 1 9 6 4 47 1 0 17 1 0 44 1 0 16 23 12 19 2 0 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 14 1 0 4 1 0 5 chain 3621 chrX 156040895 + 154124274 154124321 Arthur1B 1073 + 977 1023 94269 14 1 0 32 chain 4546 chrX 156040895 + 154166840 154166931 MER20 218 + 3 78 88082 23 4 1 7 11 0 24 2 0 20 chain 4546 chrX 156040895 + 154203968 154204059 MER20 218 + 3 78 88081 23 4 1 7 11 0 24 2 0 20 chain 4546 chrX 156040895 + 154241777 154241868 MER20 218 + 3 78 88080 23 4 1 7 11 0 24 2 0 20 chain 4546 chrX 156040895 + 154278898 154278989 MER20 218 + 3 78 88079 23 4 1 7 11 0 24 2 0 20 chain 84837 chrX 156040895 + 154521157 154522177 LTR5A 1029 + 0 1029 20652 13 0 4 117 0 13 20 15 1 42 2 0 555 9 11 98 1 7 148 chain 11066 chrX 156040895 + 154522963 154523116 MER75 514 + 331 469 68456 13 15 0 125 chain 6397 chrX 156040895 + 154524905 154525008 MER2 342 + 210 320 79680 31 4 10 38 8 9 22 chain 24214 chrX 156040895 + 154582096 154582409 MSTA-int 1630 + 1312 1625 50471 203 1 0 35 0 1 74 chain 23513 chrX 156040895 + 154582414 154582784 MSTA 426 + 0 414 51566 108 34 62 36 7 5 25 2 0 60 1 21 97 chain 81444 chrX 156040895 + 154588661 154589642 LTR5B 1012 + 0 1003 21346 36 1 0 87 0 14 313 0 14 25 1 0 126 3 0 378 1 0 10 chain 87620 chrX 156040895 + 154589655 154591273 HERVK-int 6823 + 5 3772 20117 13 1 0 24 11 9 23 1 0 26 1 0 21 1 0 12 2 0 165 1 0 8 0 1 31 1 0 4 13 14 99 1 0 143 15 12 5 0 3 10 293 2467 162 13 0 359 29 25 27 4 5 99 chain 19928 chrX 156040895 + 154597186 154597499 THE1B 368 + 0 310 56481 65 10 5 99 1 0 21 7 10 14 0 4 6 7 6 12 1 0 62 2 0 6 chain 29711 chrX 156040895 + 154656608 154656992 L1PA6 6164 + 5641 6035 42356 141 2 3 4 1 0 25 0 1 141 0 8 38 1 2 31 chain 34010 chrX 156040895 + 154661496 154662260 THE1D-int 1627 + 27 591 38701 137 302 0 181 10 112 134 chain 237016 chrX 156040895 + 154688825 154691427 L1PA3long 6157 + 3554 6156 8546 2602 chain 114187 chrX 156040895 + 154701596 154704094 L1MA2 4263 + 2502 4103 16525 142 1 0 33 0 1 4 1 0 15 5 0 213 0 2 125 0 1 190 1 0 65 52 1 52 39 38 190 1 0 10 17 13 65 1 0 33 825 0 15 1 0 98 3 0 32 0 2 41 0 1 74 1 0 6 2 1 87 15 8 43 chain 13028 chrX 156040895 + 154720091 154720259 Tigger3a 397 + 139 326 65077 9 0 10 128 0 9 31 chain 12753 chrX 156040895 + 154739275 154739465 L1MA4 2864 + 2395 2584 65515 87 24 23 79 chain 29013 chrX 156040895 + 154768707 154769019 AluYb8 318 + 4 314 43301 128 2 0 182 chain 93434 chrX 156040895 + 154808183 154809454 L1PB2 3958 + 928 3836 19125 220 0 1649 124 3 6 380 2 0 13 3 0 43 1 0 14 1 0 27 0 1 21 0 5 8 2 0 13 11 7 86 3 0 72 1 0 62 1 0 73 2 0 22 2 1 61 chain 61530 chrX 156040895 + 154825408 154826081 L1PA4 6152 + 5479 6152 25975 673 chain 9064 chrX 156040895 + 154833611 154833724 L1PA8 5853 + 5741 5853 72414 19 1 0 93 chain 361269 chrX 156040895 + 154868445 154872709 L1PA7 6471 + 2204 6469 5790 437 7 6 242 0 4 500 0 1 135 1 0 1569 4 5 518 1 0 326 1 0 246 1 2 264 2 0 10 chain 43823 chrX 156040895 + 154892746 154893370 MER4B 649 + 0 634 32236 31 11 30 29 0 2 19 12 11 234 10 5 62 4 0 141 1 0 70 chain 60464 chrX 156040895 + 154893580 154894312 MER4E1 777 + 0 759 26247 25 1 0 308 0 19 80 1 2 108 3 11 206 chain 8818 chrX 156040895 + 154908728 154908881 MER73 639 + 487 637 72955 17 4 0 9 7 11 11 3 1 49 2 1 51 chain 30339 chrX 156040895 + 154910220 154910565 L1PA5 6144 + 5783 6135 41719 206 0 7 139 chain 74138 chrX 156040895 + 154921213 154922033 L1PA5 6144 + 5318 6138 23051 820 chain 8934 chrX 156040895 + 154923682 154923788 THE1C-int 1605 + 1493 1600 72709 64 0 1 42 chain 80106 chrX 156040895 + 154924188 154925919 THE1B-int 1605 + 2 1593 21605 125 0 1 231 703 555 46 0 1 156 6 7 16 1 5 254 0 1 193 chain 26278 chrX 156040895 + 154925930 154926285 THE1B 368 + 0 368 47307 44 9 24 106 1 0 26 2 0 7 1 2 159 chain 5951 chrX 156040895 + 154937422 154937490 L1PA2 6032 + 5873 5941 81272 68 chain 546540 chrX 156040895 + 154939035 154945176 L1PA3long 6157 + 4 6157 936 574 0 1 124 9 16 5099 0 1 323 0 3 12 chain 15532 chrX 156040895 + 154976673 154976840 L1PA2 6032 + 5617 5784 61612 167 chain 14575 chrX 156040895 + 154982504 154982869 Tigger2 2703 + 184 656 62821 86 38 41 61 62 90 16 41 117 61 chain 5003 chrX 156040895 + 154983518 154983579 Tigger2b_Pri 1066 + 317 378 85649 61 chain 3948 chrX 156040895 + 155014826 155014893 L1ME1 1623 + 264 319 91772 46 12 0 9 chain 5196 chrX 156040895 + 155134195 155134256 MER54B 801 + 740 801 84695 61 chain 16041 chrX 156040895 + 155144590 155144783 L1PA7 6471 + 6171 6364 60971 193 chain 8901 chrX 156040895 + 155144786 155144888 L1PA7 6471 + 6365 6467 72782 102 chain 21137 chrX 156040895 + 155175467 155175829 THE1B 368 + 0 368 54963 104 12 13 52 65 71 68 1 0 60 chain 558538 chrX 156040895 + 155197626 155203769 L1PA3long 6157 + 6 6157 224 734 1 2 65 0 1 60 0 1 546 0 1 2516 0 1 708 1 4 745 1 0 617 1 2 148 chain 38708 chrX 156040895 + 155317063 155319253 L1PB1 5432 + 2315 4510 11699 142 0 3 35 10 6 22 11 12 47 0 5 73 35 34 25 0 1 116 7 1 86 22 26 44 1 0 4 0 1 7 0 3 683 0 1 40 1 0 5 5 0 219 0 1 36 0 2 316 0 1 198 chain 448866 chrX 156040895 + 155319886 155325571 L1PA8 5853 + 50 5654 4414 20 5 3 9 1 0 6 59 20 31 0 1 47 0 1 117 0 4 236 0 1 121 30 28 1104 0 4 471 0 4 297 0 1 47 0 3 262 1 0 230 0 23 10 0 1 62 0 1 170 1 0 658 1 0 4 3 12 143 0 1 132 65 0 72 26 0 190 0 1 323 0 1 87 2 0 31 3 9 515 1 0 44 2 0 46 chain 5921 chrX 156040895 + 155325824 155326159 L1PB1 5432 + 5114 5422 11699 24 8 6 12 2 0 3 2 0 9 2 0 52 2 1 16 2 1 43 1 0 9 30 22 14 3 1 5 1 0 14 2 0 23 2 1 21 1 0 13 3 2 16 chain 6282 chrX 156040895 + 155329422 155329501 MADE1 96 + 0 96 80061 28 0 17 51 chain 23936 chrX 156040895 + 155329501 155329903 L1MA2 4263 + 3727 4114 50887 65 17 14 11 2 0 141 9 7 42 5 4 33 1 2 10 16 9 40 1 0 9 chain 248949 chrX 156040895 + 155355064 155358488 L1PA13 3608 + 116 3479 8271 16 18 15 16 1 0 14 6 3 21 28 17 66 13 11 107 12 11 15 1 0 17 0 3 5 1 0 4 18 10 14 1 0 17 8 6 12 16 13 53 1 6 43 2 0 250 1 0 394 2 0 621 2 1 5 0 1 25 22 14 19 3 7 59 1 2 7 1 0 4 1 0 1088 1 0 32 1 0 66 2 0 48 0 1 61 1 0 20 4 0 35 21 12 40 2 0 5 2 0 17 1 0 14 chain 32444 chrX 156040895 + 155394936 155395365 LTR3A 482 + 0 442 39997 19 2 1 123 18 19 33 0 14 46 1 0 5 1 0 120 0 1 61 chain 79168 chrX 156040895 + 155402272 155403140 L1PA3long 6157 + 5285 6157 21815 722 1 5 145 chain 35161 chrX 156040895 + 155403165 155403743 L1PB1 5432 + 4853 5404 37918 46 0 2 55 0 5 6 5 1 135 13 13 18 1 0 10 1 0 14 5 1 9 2 0 52 2 1 15 1 0 45 1 0 15 1 0 4 2 0 11 9 0 16 2 0 5 21 18 20 1 0 22 1 0 12 chain 556046 chrX 156040895 + 155421974 155428112 L1PA3long 6157 + 1 6153 356 4309 0 1 46 0 4 855 1 2 89 1 0 700 0 1 105 1 9 31 chain 254683 chrX 156040895 + 155429868 155433680 L1PA5 6144 + 2310 6142 8120 593 0 14 174 0 2 70 0 1 238 2 0 5 0 2 87 0 1 436 0 1 410 0 4 175 0 1 681 0 1 88 1 0 841 4 0 7 chain 118764 chrX 156040895 + 155451214 155452797 THE1B-int 1605 + 0 1605 15759 174 0 24 232 38 21 231 1 0 7 47 68 416 5 0 432 chain 10414 chrX 156040895 + 155498917 155499064 L1MA2 4263 + 3965 4105 69583 93 7 0 47 chain 104662 chrX 156040895 + 155500002 155501140 L1PA4 6152 + 5013 6151 17732 1138 chain 13263 chrX 156040895 + 155527132 155527423 MSTA 426 + 0 336 64687 100 23 47 12 0 4 36 1 48 11 61 10 24 4 25 19 chain 558082 chrX 156040895 + 155567853 155573980 L1PA3long 6157 + 6 6144 243 567 0 4 1715 0 1 404 1 0 294 0 3 40 0 1 141 1 0 1978 0 4 986 chain 226128 chrX 156040895 + 155580757 155583325 L1PA5 6144 + 3565 6137 8857 649 0 1 917 0 1 197 0 2 805 chain 43675 chrX 156040895 + 155598231 155598707 L1PA4 6152 + 5670 6146 32331 476 chain 11270 chrX 156040895 + 155633258 155633381 AluY 311 + 0 123 68128 123 chain 29676 chrX 156040895 + 155635454 155635825 L1PA7 6471 + 5552 5922 42395 24 1 0 45 1 0 82 0 1 218 chain 28274 chrX 156040895 + 155636883 155637190 L1PA3long 6157 + 5846 6153 44451 307 chain 133690 chrX 156040895 + 155648747 155650317 L1PA7 6471 + 3433 5017 13674 64 1 0 52 0 4 255 0 1 5 1 0 635 0 1 157 0 2 57 0 8 343 chain 92588 chrX 156040895 + 155672206 155673224 L1PA3long 6157 + 5138 6157 19260 871 0 1 147 chain 3544 chrX 156040895 + 155677596 155677635 LTR79 453 + 320 359 94912 39 chain 20261 chrX 156040895 + 155678957 155679199 L1PA6 6164 + 5915 6157 56062 242 chain 2743 chrX 156040895 + 155687897 155687937 L1PA8 5853 + 5711 5750 102012 29 2 1 9 chain 39656 chrX 156040895 + 155691149 155691649 MER75 514 + 11 513 34923 485 0 2 15 chain 14455 chrX 156040895 + 155722539 155722797 L1M1 2793 + 2228 2486 62960 35 24 27 150 23 21 21 1 0 4 chain 85446 chrX 156040895 + 155740012 155741038 MER11A 1151 + 0 1151 20546 86 0 91 22 2 0 95 0 2 92 0 1 290 0 1 90 3 0 38 0 1 12 5 38 172 0 1 119 chain 168000 chrX 156040895 + 155741054 155743273 L1PA10 4194 + 634 2891 11215 49 9 8 11 0 9 8 9 0 392 1 0 146 0 3 30 0 1 21 6 11 511 0 3 385 0 4 20 12 16 264 2 1 5 0 15 81 9 11 37 3 7 208 chain 17277 chrX 156040895 + 155750067 155750331 L1PA16 3655 + 3378 3619 59484 200 36 18 7 5 0 16 chain 36043 chrX 156040895 + 155762660 155763186 L1PA16 3655 + 3047 3563 37391 105 6 0 43 3 1 5 1 0 89 2 0 43 4 0 45 0 6 107 16 15 57 chain 520700 chrX 156040895 + 155808798 155814968 L1PA6 6164 + 0 6161 2236 369 0 8 11 16 15 96 13 12 123 0 1 307 0 6 692 1 0 195 1 0 18 0 5 476 22 8 655 0 1 69 0 1 19 2 1 97 2 0 4 0 1 317 0 4 854 0 4 55 20 1 1736 chain 21942 chrX 156040895 + 155841839 155842182 THE1B 368 + 0 368 53913 5 0 1 38 5 20 108 1 0 26 35 45 125 chain 117215 chrX 156040895 + 155842182 155843646 THE1B-int 1605 + 0 1605 16017 430 0 25 298 19 133 74 0 1 379 0 1 264 chain 11454 chrX 156040895 + 155865618 155865993 LTR12D 1347 + 600 1094 67827 114 26 2 35 170 314 17 1 0 12 chain 90404 chrX 156040895 + 155903228 155904222 L1PA3long 6157 + 5019 6014 19609 639 0 1 355 chain 12822 chrX 156040895 + 155904222 155904364 L1PA3long 6157 + 6015 6157 65410 142 chain 20413 chrX 156040895 + 155927134 155927370 L1PA7 6471 + 6224 6461 55872 91 0 1 145 chain 7046 chrX 156040895 + 155956431 155956535 LTR7B 505 + 402 505 77455 39 15 14 50 chain 40393 chrX 156040895 + 155982496 155983032 THE1D-int 1627 + 0 537 34391 141 0 2 163 13 12 219 chain 19927 chrX 156040895 + 155987940 155988280 THE1D 372 + 18 372 56483 45 0 1 38 1 0 33 80 94 143 chain 3570 chrX 156040895 + 156017718 156017792 L1MC 810 + 240 313 94655 34 17 16 23 chain 109268 chrX 156040895 + 156018476 156019847 L1P1 4361 + 15 1405 17146 107 0 14 15 9 10 15 13 12 37 1 0 64 1 0 48 7 6 193 1 0 701 1 0 44 0 10 114 chain 3234 chrY 57227415 + 10224 10259 LTR12D 1347 + 1142 1177 97635 35 chain 3836 chrY 57227415 + 10325 10369 LTR12D 1347 + 1111 1155 92594 44 chain 36074 chrY 57227415 + 11799 12245 LTR6B 557 + 0 446 37351 359 0 1 40 1 0 46 chain 38573 chrY 57227415 + 23328 24257 LTR2C 499 + 6 478 35660 176 1 4 71 459 0 178 1 0 43 chain 3234 chrY 57227415 + 222621 222656 LTR12D 1347 + 1142 1177 97634 35 chain 3836 chrY 57227415 + 222722 222766 LTR12D 1347 + 1111 1155 92593 44 chain 36074 chrY 57227415 + 224196 224642 LTR6B 557 + 0 446 37350 359 0 1 40 1 0 46 chain 38667 chrY 57227415 + 235396 236325 LTR2C 499 + 6 478 35592 176 1 4 71 459 0 178 1 0 43 chain 21165 chrY 57227415 + 237511 237775 AluSp 311 + 17 282 54929 98 0 3 14 2 0 150 chain 6019 chrY 57227415 + 249721 249821 MER4D0 881 + 1 103 81003 47 8 9 31 3 4 11 chain 28387 chrY 57227415 + 383558 383866 AluY 311 + 3 311 44288 308 chain 7568 chrY 57227415 + 409362 409515 THE1B 368 + 153 307 75936 16 31 30 15 0 4 14 1 0 6 7 6 63 chain 51553 chrY 57227415 + 434395 434992 L1PA3long 6157 + 5516 6142 29019 395 0 5 131 0 24 71 chain 21532 chrY 57227415 + 454568 455221 L1PA7 6471 + 6041 6349 54466 24 345 0 284 chain 50083 chrY 57227415 + 511057 511654 L1PA7 6471 + 5871 6470 29528 147 0 1 302 5 6 143 chain 65736 chrY 57227415 + 520284 521080 L1PA7 6471 + 5593 6391 25022 21 0 2 14 0 1 71 0 1 7 2 0 73 2 3 534 1 0 71 chain 4741 chrY 57227415 + 614608 614768 MER39B 650 + 65 150 87007 7 4 0 39 83 12 27 chain 49820 chrY 57227415 + 669243 669878 L1PA7 6471 + 5821 6455 29629 30 22 22 429 1 0 153 chain 49989 chrY 57227415 + 759897 760517 L1PA7 6471 + 5851 6468 29561 365 0 1 244 4 0 7 chain 32048 chrY 57227415 + 806257 806725 LTR7B 505 + 0 498 40310 175 50 81 20 2 4 63 2 0 16 1 0 139 chain 47592 chrY 57227415 + 855869 856401 L1PA7 6471 + 5908 6440 30443 532 chain 2992 chrY 57227415 + 1001664 1001695 AluJb 308 - 121 152 99938 31 chain 12308 chrY 57227415 + 1066196 1066353 L1PA7 6471 + 6311 6467 66277 35 8 7 114 chain 32641 chrY 57227415 + 1081977 1082412 LTR7 482 + 0 475 39820 103 5 0 7 0 5 50 0 5 60 0 31 158 12 14 30 0 2 10 chain 83674 chrY 57227415 + 1170892 1171940 LTR5A 1029 + 0 1029 20876 146 0 13 50 22 8 153 18 1 591 1 0 67 chain 49308 chrY 57227415 + 1172934 1173586 LTR6A 649 + 0 649 29830 275 1 0 10 1 0 146 10 9 209 chain 35129 chrY 57227415 + 1175447 1176702 LTR2C 499 + 6 487 37938 127 815 40 8 0 1 305 chain 9461 chrY 57227415 + 1179538 1179667 LTR66 600 + 0 141 71586 79 1 13 49 chain 3089 chrY 57227415 + 1191831 1191866 MER4D 903 + 6 41 98873 35 chain 25094 chrY 57227415 + 1191944 1192229 AluYa5 310 + 21 306 49124 285 chain 6608 chrY 57227415 + 1234619 1234698 MER4E1 777 + 346 425 78956 79 chain 147720 chrY 57227415 + 1235046 1237042 SVA_D 2077 + 316 2075 12502 592 1 0 8 3 1 30 11 0 4 0 1 96 0 1 53 0 1 27 0 1 4 161 39 6 0 2 165 1 0 35 31 6 13 4 0 44 1 0 97 76 4 85 0 2 133 1 0 303 5 0 6 chain 7646 chrY 57227415 + 1235875 1235974 SVA_D 2077 + 1339 1487 48256 13 0 49 44 2 0 4 0 1 32 0 1 4 chain 3959 chrY 57227415 + 1235984 1236036 SVA_D 2077 + 1299 1352 51427 6 0 1 46 chain 2514 chrY 57227415 + 1236243 1236274 SVA_D 2077 + 1255 1286 35912 31 chain 5676 chrY 57227415 + 1236433 1236503 SVA_D 2077 + 1415 1537 35912 18 0 49 38 0 3 14 chain 11287 chrY 57227415 + 1273119 1273254 MER4E1 777 + 12 147 68100 135 chain 29333 chrY 57227415 + 1461034 1461413 MLT2A1 477 + 0 373 42832 129 5 1 39 4 1 11 0 1 191 chain 25934 chrY 57227415 + 1480518 1480830 L1PA7 6471 + 6156 6469 47814 38 0 1 274 chain 38349 chrY 57227415 + 1531798 1532712 L1PB1 5432 + 4705 5276 35813 277 40 5 112 293 0 15 13 0 16 28 30 7 2 0 53 2 1 16 1 0 39 chain 6099 chrY 57227415 + 1536072 1536142 MER85 139 + 16 86 80733 70 chain 3085 chrY 57227415 + 1630004 1630042 MER74A 558 + 8 47 98932 21 0 1 17 chain 26749 chrY 57227415 + 1632680 1633015 L1PA6 6164 + 5832 6159 46612 171 8 0 156 chain 31795 chrY 57227415 + 1653948 1654324 MER41A 554 + 0 376 40500 376 chain 12324 chrY 57227415 + 1671590 1671750 LTR7B 505 + 267 426 66256 146 2 1 12 chain 36042 chrY 57227415 + 1686159 1686568 L1PA4 6152 + 5742 6151 37392 409 chain 22648 chrY 57227415 + 1715549 1715891 L1PA8 5853 + 5521 5844 52907 43 1 0 45 2 0 14 1 0 56 1 0 8 2 1 51 14 13 8 1 0 40 11 0 44 chain 39838 chrY 57227415 + 1726879 1727329 L1PA4 6152 + 5691 6140 34786 397 1 0 52 chain 37798 chrY 57227415 + 1730008 1730435 L1PA7 6471 + 6033 6460 36209 427 chain 47169 chrY 57227415 + 1822605 1823192 L1PA7 6471 + 5883 6469 30585 425 1 2 149 2 0 10 chain 19265 chrY 57227415 + 1879961 1880180 L1PA7 6471 + 6242 6461 57274 219 chain 4480 chrY 57227415 + 1892459 1892538 THE1B 368 + 253 327 88445 47 7 1 9 1 2 15 chain 30049 chrY 57227415 + 1907641 1908001 L1PA7 6471 + 6100 6461 41999 184 0 1 17 1 0 131 0 1 27 chain 23295 chrY 57227415 + 1917299 1917583 AluSp 311 + 5 289 51937 284 chain 27254 chrY 57227415 + 2149062 2149418 THE1B 368 + 0 368 45889 44 1 16 114 1 0 125 3 1 68 chain 20655 chrY 57227415 + 2157841 2158133 THE1B 368 + 0 304 55558 44 0 15 32 3 0 78 10 9 98 7 8 20 chain 7233 chrY 57227415 + 2166118 2166238 L1PB1 5432 + 5109 5220 76850 5 1 0 20 1 0 13 1 0 11 9 5 5 2 0 52 chain 13755 chrY 57227415 + 2166734 2167084 L1PB1 5432 + 5105 5420 63941 10 3 0 18 2 1 13 1 0 11 5 1 9 2 0 52 18 16 43 2 1 16 29 16 13 13 10 11 2 0 13 1 0 5 6 6 21 1 0 13 1 0 16 chain 53646 chrY 57227415 + 2177838 2178492 L1PA7 6471 + 5823 6469 28347 226 1 0 263 1 0 147 6 0 10 chain 33196 chrY 57227415 + 2179048 2179514 LTR2B 499 + 9 499 39357 5 1 0 24 0 8 23 3 0 42 3 22 119 3 4 50 5 6 5 1 0 182 chain 61502 chrY 57227415 + 2190275 2191065 L1PA8 5853 + 5071 5853 25984 23 1 0 468 1 0 47 2 0 73 1 0 4 1 0 54 2 1 19 14 13 80 chain 25424 chrY 57227415 + 2218851 2219293 LTR21B 408 + 0 408 48595 61 8 4 4 1 0 28 1 0 5 5 0 124 41 0 14 1 0 4 13 31 70 5 7 4 1 0 52 chain 7466 chrY 57227415 + 2245618 2246135 MER4A1 472 + 288 472 76210 52 409 74 14 0 2 42 chain 46212 chrY 57227415 + 2251161 2251742 LTR10C 591 + 0 591 30955 14 0 5 372 1 2 117 2 1 26 0 5 49 chain 3234 chrY 57227415 + 2270782 2270822 LTR12 884 + 228 268 97625 40 chain 3678 chrY 57227415 + 2270919 2270970 LTR12 884 + 181 274 93756 27 0 42 24 chain 7685 chrY 57227415 + 2272893 2272990 L1PB3 3668 + 3291 3388 75658 97 chain 3806 chrY 57227415 + 2287468 2287516 MLT1D 503 + 0 50 92797 20 0 2 28 chain 3195 chrY 57227415 + 2287624 2287663 MLT1D 503 + 9 50 97936 11 0 2 28 chain 3064 chrY 57227415 + 2287770 2287809 MLT1D 503 + 9 50 99150 11 0 2 28 chain 54838 chrY 57227415 + 2294932 2295586 L1PA7 6471 + 5817 6468 27931 151 0 1 168 1 0 302 0 1 21 4 0 7 chain 60322 chrY 57227415 + 2305269 2305991 L1PA7 6471 + 5739 6461 26286 722 chain 4442 chrY 57227415 + 2313307 2313363 LTR39 781 + 505 564 88640 9 0 3 47 chain 9564 chrY 57227415 + 2316694 2316821 MER85 139 + 0 138 71341 42 0 1 46 1 11 38 chain 23905 chrY 57227415 + 2340047 2340349 L1PA7 6471 + 6168 6469 50933 249 10 0 7 0 9 36 chain 31871 chrY 57227415 + 2344478 2344870 L1PA7 6471 + 6075 6467 40439 24 9 7 30 0 1 320 0 1 9 chain 8537 chrY 57227415 + 2365780 2365895 L1PA8 5853 + 5674 5785 73604 5 1 0 12 1 0 49 2 1 19 1 0 25 chain 18460 chrY 57227415 + 2384701 2384923 L1PA2 6032 + 5808 6032 58149 79 0 2 143 chain 53569 chrY 57227415 + 2419390 2419984 L1PA4 6152 + 5563 6152 28371 583 5 0 6 chain 57778 chrY 57227415 + 2534506 2535187 L1PA7 6471 + 5786 6468 27024 649 3 4 29 chain 3990 chrY 57227415 + 2568511 2568590 MSTB1 431 + 351 431 91519 31 21 22 27 chain 32368 chrY 57227415 + 2599937 2600359 L1PA8 5853 + 5438 5853 40063 124 1 0 46 2 0 74 1 0 5 4 3 50 2 1 19 1 0 93 chain 44716 chrY 57227415 + 2604540 2605070 MER41A 554 + 18 553 31738 390 0 4 18 0 1 122 chain 44678 chrY 57227415 + 2687863 2688381 L1PA7 6471 + 5927 6447 31751 91 0 1 100 0 1 327 chain 4368 chrY 57227415 + 2732049 2732098 MADE1 96 + 45 94 89062 49 chain 33347 chrY 57227415 + 2781060 2781479 PABL_A 660 + 0 434 39221 63 0 5 16 0 9 263 0 1 77 chain 76032 chrY 57227415 + 2876475 2877456 LTR13 1007 + 7 1007 22559 61 2 0 313 4 5 64 0 1 238 0 6 41 0 1 78 0 1 80 8 20 59 2 1 31 chain 147783 chrY 57227415 + 2903291 2906173 L1PB1 5432 + 3179 5424 12499 58 1 0 6 0 1 158 2 0 326 5 7 9 0 1 17 11 15 300 316 0 48 5 10 67 0 1 182 0 1 228 7 8 181 0 1 8 11 13 138 6 7 24 24 16 40 19 17 36 359 55 9 2 0 52 1 0 18 1 0 43 1 0 11 8 5 17 38 27 6 2 0 13 0 1 10 1 0 19 5 4 11 1 0 16 1 0 4 chain 238275 chrY 57227415 + 2921782 2925116 L1PA7 6471 + 3422 6469 8511 107 2 1 36 0 3 62 3 4 30 3 0 237 299 0 413 10 11 213 4 5 411 1 0 162 0 1 47 0 1 224 0 2 192 18 0 9 1 21 104 0 1 144 0 1 117 0 1 14 0 1 221 10 11 78 12 12 150 chain 4455 chrY 57227415 + 3041220 3041271 LTR19A 502 + 440 491 88582 51 chain 4732 chrY 57227415 + 3042782 3042918 MER2 342 + 135 274 87065 16 41 42 17 12 14 50 chain 8536 chrY 57227415 + 3072851 3073318 LTR12D 1347 + 587 1081 73609 22 2 44 40 61 13 22 244 282 12 4 0 27 3 2 30 chain 37172 chrY 57227415 + 3088086 3088678 MER51C 639 + 0 603 36634 14 0 61 20 61 5 105 5 6 15 0 1 21 4 0 14 0 2 97 0 4 35 5 7 29 0 1 4 1 0 162 chain 21862 chrY 57227415 + 3122078 3122384 L1PB2 3958 + 3451 3753 54025 88 3 1 77 1 0 59 4 3 74 chain 44461 chrY 57227415 + 3137134 3137716 HERVL-int 5654 + 5003 5608 31853 275 0 3 106 0 11 36 1 5 53 0 5 111 chain 50694 chrY 57227415 + 3188997 3189620 LTR12_ 688 + 0 688 29316 80 0 66 367 1 0 175 chain 25034 chrY 57227415 + 3208375 3208736 THE1D 372 + 0 372 49224 64 1 11 91 18 21 6 1 0 147 1 0 32 chain 137986 chrY 57227415 + 3275655 3277242 L1PA5 6144 + 4557 6144 13269 65 1 0 896 0 1 625 chain 51277 chrY 57227415 + 3299337 3299937 L1PA5 6144 + 4709 5306 29137 318 2 1 259 2 0 19 chain 38148 chrY 57227415 + 3302346 3302880 MLT2A2 560 + 0 560 35949 69 2 0 100 3 11 10 9 17 193 14 25 60 5 6 69 chain 21464 chrY 57227415 + 3304125 3304417 L1PA7 6471 + 6168 6461 54559 38 4 5 96 2 0 5 10 12 137 chain 23854 chrY 57227415 + 3318731 3319107 THE1C 375 + 0 375 51017 66 0 32 8 38 8 11 3 0 59 2 3 163 1 0 25 chain 519680 chrY 57227415 + 3335195 3341698 L1PA7 6471 + 0 6466 2288 124 0 1 286 6 7 102 0 1 168 20 21 298 1 0 295 0 1 191 8 11 246 1 2 147 0 1 265 0 1 473 18 1 122 0 4 277 0 1 438 14 13 24 0 1 7 1 0 165 1 0 63 0 1 244 0 3 63 0 1 127 60 0 171 0 2 149 7 6 40 31 28 23 1 2 54 0 4 316 4 5 145 1 2 52 0 4 96 0 2 102 0 1 221 0 10 499 2 1 184 1 2 149 chain 25116 chrY 57227415 + 3375947 3376337 L1PA8 5853 + 5463 5853 49092 94 6 5 47 2 0 66 5 4 9 4 0 9 1 4 38 5 4 17 6 5 15 0 7 66 chain 561057 chrY 57227415 + 3443550 3449565 L1HS 6032 + 1 6032 149 184 0 1 1936 3 0 2112 0 4 430 0 2 39 0 11 575 0 1 736 chain 5922 chrY 57227415 + 3465405 3465474 L1PA7 6471 + 5233 5302 81389 69 chain 23900 chrY 57227415 + 3465474 3465789 L1PA7 6471 + 5303 5621 50940 229 0 1 4 1 0 6 1 0 49 3 7 22 chain 25644 chrY 57227415 + 3465790 3466144 L1PA7 6471 + 5621 5938 48252 186 42 1 6 0 4 120 chain 43030 chrY 57227415 + 3466144 3466669 L1PA7 6471 + 5939 6461 32756 454 0 2 6 2 0 53 3 0 7 chain 59161 chrY 57227415 + 3559818 3560611 L1PA13 3608 + 1086 1896 26619 36 0 1 16 0 1 104 7 11 46 6 10 204 5 9 126 0 3 243 chain 97715 chrY 57227415 + 3630554 3631644 L1PA5 6144 + 5044 6138 18561 253 0 4 837 chain 84630 chrY 57227415 + 3679536 3680627 L1PA8 5853 + 4763 5853 20697 221 0 4 18 0 3 24 9 1 102 3 5 324 0 4 95 1 0 44 2 0 70 2 1 64 1 0 17 1 0 93 chain 29328 chrY 57227415 + 3707603 3707976 MER51B 395 + 7 395 42836 221 9 24 143 chain 37536 chrY 57227415 + 3743706 3744347 L1PB1 5432 + 4719 5284 36380 360 0 4 11 102 33 7 1 0 8 3 2 12 2 0 3 2 0 9 2 0 52 2 1 16 2 0 47 chain 60434 chrY 57227415 + 3752128 3752907 MER4E 760 + 0 760 26254 16 7 1 53 8 1 99 16 9 190 4 6 71 1 0 314 chain 17923 chrY 57227415 + 3768078 3768298 L1P2 5180 + 2848 3069 58728 166 0 1 54 chain 5110 chrY 57227415 + 3781582 3781642 L1M3 994 + 218 278 85106 60 chain 74229 chrY 57227415 + 3782432 3783386 LTR5_Hs 974 + 0 974 23027 459 1 5 32 2 0 160 0 1 21 1 19 79 7 7 34 2 1 156 chain 11567 chrY 57227415 + 3804148 3804302 LTR19A 502 + 0 153 67631 34 5 4 115 chain 176245 chrY 57227415 + 3862166 3864609 MER4-int 2692 + 36 2519 10768 49 0 1 13 1 0 23 2 0 76 1 0 45 0 1 415 1 0 5 9 10 51 4 2 161 6 7 172 10 13 10 3 0 12 1 0 70 0 1 51 0 1 170 0 16 50 5 7 284 0 1 4 0 1 131 1 0 21 3 4 80 16 14 18 2 5 156 0 2 5 5 14 15 0 3 16 18 21 9 0 1 9 1 4 233 chain 441338 chrY 57227415 + 4000000 4005845 L1PA7 6471 + 908 6459 4549 361 27 28 56 5 3 17 2 0 5 0 3 19 3 0 157 1 0 74 0 1 43 0 1 72 5 6 79 0 2 199 0 1 19 17 20 4 1 0 66 2 0 93 0 1 113 1 3 242 0 1 973 2 0 182 0 4 71 28 26 213 0 2 142 0 2 456 0 4 248 0 1 424 0 8 76 0 1 191 1 0 158 325 0 460 7 15 205 chain 18696 chrY 57227415 + 4011737 4011974 THE1A-int 1579 + 205 442 57907 237 chain 20234 chrY 57227415 + 4045981 4046310 THE1D 372 + 47 372 56097 27 16 17 59 5 0 34 27 29 11 1 0 32 1 0 116 chain 113849 chrY 57227415 + 4098934 4100298 LTR12C 1709 + 0 1709 16573 104 0 1 693 3 319 107 0 4 71 8 32 378 chain 180397 chrY 57227415 + 4104846 4107652 MER4-int 2692 + 1 2692 10569 10 1 0 25 2 0 21 1 0 4 0 1 37 4 1 18 1 0 11 9 4 355 0 1 43 7 16 65 0 5 41 1 0 51 0 1 13 10 11 11 32 47 47 0 1 4 1 0 14 0 1 59 2 1 147 5 57 194 221 27 108 1 0 14 4 3 171 1 0 4 0 1 107 0 1 24 1 0 188 1 2 36 0 1 13 0 1 31 0 4 212 15 16 319 11 12 33 0 1 45 chain 120771 chrY 57227415 + 4149335 4150946 L1PA10 4194 + 2526 4146 15387 80 16 6 8 0 13 43 4 8 13 0 1 141 0 4 890 0 2 92 2 1 254 8 7 15 24 21 21 chain 428344 chrY 57227415 + 4208757 4214301 HERVL-int 5654 + 0 5578 4771 69 0 1 4 1 0 624 46 41 465 3 0 60 0 5 100 23 24 327 0 3 1139 0 16 78 10 12 538 0 4 456 0 2 15 0 1 112 0 1 109 0 6 342 5 7 131 34 34 689 6 5 158 chain 8078 chrY 57227415 + 4229356 4229514 LOR1-int 1871 + 103 251 74680 61 1 0 8 1 0 16 33 25 38 chain 149422 chrY 57227415 + 4230072 4231911 L1P2 5180 + 1783 3620 12393 256 1 2 56 0 10 175 1 0 37 12 0 1301 chain 29103 chrY 57227415 + 4272865 4273294 LTR7B 505 + 0 503 43183 105 0 10 60 0 38 12 0 25 5 1 0 23 0 2 41 30 31 10 1 0 26 0 1 52 15 14 48 chain 33408 chrY 57227415 + 4274156 4274657 LTR21A 479 + 0 479 39168 22 1 0 35 3 0 7 1 0 54 2 11 56 0 1 62 0 1 4 1 0 4 25 0 127 7 5 10 7 6 17 0 1 56 chain 30838 chrY 57227415 + 4288183 4288636 LTR7B 505 + 0 494 41275 108 0 10 57 0 38 12 34 27 26 0 2 85 1 0 76 14 13 40 chain 109659 chrY 57227415 + 4295018 4296302 SVA_C 1631 + 54 1630 17106 709 0 296 555 4 0 16 chain 37582 chrY 57227415 + 4300408 4302023 L1PB2 3958 + 32 3836 36346 20 43 26 6 0 7 13 12 7 27 2 0 35 3 0 8 1 0 46 1 0 3 2 0 58 3 6 39 10 11 25 0 2 6 3 0 51 1 0 34 5 0 32 844 3065 58 1 0 64 6 5 67 2 0 19 10 9 55 chain 82644 chrY 57227415 + 4312887 4313865 L1PA6 6164 + 5166 6158 21096 149 1 0 114 0 1 259 0 3 176 0 2 78 0 9 201 chain 17668 chrY 57227415 + 4347989 4348574 LTR12D 1347 + 478 1335 59045 16 2 74 125 73 13 46 180 303 27 69 206 47 chain 266332 chrY 57227415 + 4350080 4353204 L1PA5 6144 + 2945 6144 7794 212 1 2 16 0 1 78 1 0 268 8 77 46 4 0 1299 0 1 77 0 1 39 6 0 7 0 6 288 9 7 228 0 1 206 1 0 45 0 9 285 chain 34892 chrY 57227415 + 4361934 4362377 LTR2 463 + 0 463 38099 161 8 28 274 chain 28697 chrY 57227415 + 4378840 4379278 MER57-int 2662 + 40 458 43806 30 61 42 156 0 1 46 2 0 59 0 1 38 1 0 45 chain 44807 chrY 57227415 + 4402142 4402698 HERVL-int 5654 + 2400 2955 31696 381 0 1 21 1 0 39 1 0 113 chain 94217 chrY 57227415 + 4417263 4418476 L1PA8 5853 + 3684 4904 19010 186 0 2 232 0 1 263 6 9 113 0 1 413 chain 449505 chrY 57227415 + 4418647 4423822 L1PA4 6152 + 0 5188 4401 730 0 1 244 0 1 268 1 0 68 1 9 680 5 13 1670 4 0 1504 chain 76716 chrY 57227415 + 4436931 4437804 MER11D 897 + 0 897 22390 559 0 1 14 0 23 300 chain 76486 chrY 57227415 + 4454126 4455089 L1PA10 4194 + 3175 4136 22438 336 1 0 570 0 1 9 1 2 11 15 12 20 chain 79098 chrY 57227415 + 4463320 4464340 MER11C 1089 + 0 1027 21841 250 3 4 59 0 4 215 33 35 24 6 4 95 0 4 5 1 0 18 1 0 20 0 1 182 1 0 107 chain 35830 chrY 57227415 + 4479862 4480296 L1PA7 6471 + 6034 6469 37510 61 0 1 171 0 2 182 0 1 7 3 0 10 chain 38281 chrY 57227415 + 4486154 4486669 MLT2A2 560 + 0 560 35858 302 1 3 25 0 24 48 0 11 29 15 19 89 0 4 6 chain 62168 chrY 57227415 + 4497938 4498791 LTR12D 1347 + 409 1347 25828 127 0 31 13 39 0 114 0 17 309 9 83 28 0 1 134 0 2 16 1 0 63 chain 2857 chrY 57227415 + 4505280 4505314 MER21C 908 + 345 379 101170 34 chain 62664 chrY 57227415 + 4516793 4517618 L1PA11 4918 + 2869 3696 25718 17 1 0 187 6 7 260 0 2 192 1 0 18 0 1 105 3 0 5 1 4 29 chain 15310 chrY 57227415 + 4527656 4528384 MSTA-int 1630 + 1294 1616 61901 46 82 84 84 416 9 95 1 0 4 chain 4621 chrY 57227415 + 4571513 4571614 LTR12C 1709 + 654 716 87694 29 39 0 33 chain 53648 chrY 57227415 + 4585222 4585963 MER4E 760 + 0 753 28346 17 0 1 133 16 20 25 0 3 31 0 3 45 18 19 74 4 0 220 14 18 144 chain 26328 chrY 57227415 + 4591471 4591836 MLT2A1 477 + 0 371 47231 142 0 1 25 5 9 18 21 22 154 chain 88235 chrY 57227415 + 4634022 4635053 LTR5A 1029 + 0 1029 19996 147 1 0 815 1 0 67 chain 147926 chrY 57227415 + 4655407 4657888 L1PA11 4918 + 2441 4567 12486 458 0 2 47 0 1 75 1 0 245 346 12 51 1 0 18 1 0 185 0 1 4 1 0 56 1 0 29 13 14 27 3 0 29 0 1 123 3 1 232 7 16 219 52 40 6 0 4 56 3 2 79 2 0 14 1 0 14 60 47 5 1 0 13 chain 4959 chrY 57227415 + 4667334 4667394 L1PREC2 3366 + 1980 2040 85847 60 chain 308476 chrY 57227415 + 4752675 4756212 L1P1 4361 + 799 4341 6651 56 1 2 177 1 0 186 5 6 1269 0 4 704 1 0 90 0 1 215 0 1 172 0 1 66 2 1 401 1 0 129 5 7 18 1 0 23 2 1 12 chain 3454 chrY 57227415 + 4781283 4781341 L1PA13 3608 + 147 201 95606 17 2 1 12 3 0 24 chain 35067 chrY 57227415 + 4805213 4805684 LTR12 884 + 0 624 37976 24 1 0 50 1 0 134 4 46 10 0 113 247 chain 216783 chrY 57227415 + 4813300 4815755 L1PA4 6152 + 3692 6152 9125 939 1 0 34 1 0 113 2 0 526 0 4 833 0 5 6 chain 186359 chrY 57227415 + 4829168 4831799 L1PA10 4194 + 407 4161 10282 54 0 20 9 4 1139 128 4 2 6 0 4 44 0 4 8 36 21 764 1 15 7 1 0 16 13 9 46 0 1 19 2 1 227 0 5 7 28 3 162 20 9 14 2 0 702 0 5 248 20 17 27 1 0 11 chain 26722 chrY 57227415 + 4847891 4848364 L1PB2 3958 + 3361 3814 46653 16 3 0 62 2 0 13 20 16 52 49 48 49 1 0 62 4 3 53 6 1 18 2 0 21 1 0 39 chain 545506 chrY 57227415 + 4866359 4872517 L1PA3long 6157 + 0 6153 1003 742 1 0 1125 0 1 1008 0 1 231 2 1 68 1 2 1178 0 4 104 11 0 1432 0 1 255 chain 24266 chrY 57227415 + 4909847 4910166 AluSp 311 + 10 311 50392 110 5 0 8 13 0 183 chain 46080 chrY 57227415 + 4911555 4912128 L1PA5 6144 + 5593 6144 31024 297 1 2 120 0 1 66 25 1 64 chain 21093 chrY 57227415 + 4941558 4941832 L1P3 4156 + 0 273 55013 251 2 1 21 chain 55111 chrY 57227415 + 4941832 4942554 L1PA8 5853 + 5135 5849 27835 379 1 0 50 1 0 35 11 9 70 2 1 9 1 0 52 2 1 19 2 1 88 chain 548951 chrY 57227415 + 4973239 4979394 L1PA3long 6157 + 0 6157 813 152 0 1 102 0 1 85 19 14 387 1 0 277 0 4 710 1 2 3222 0 1 1199 chain 12731 chrY 57227415 + 5019079 5019249 U2 167 + 0 164 65562 130 2 0 11 5 1 22 chain 10289 chrY 57227415 + 5097550 5097791 L1PB1 5432 + 5207 5424 69827 13 2 1 16 2 1 42 1 0 16 2 0 6 16 6 19 25 20 23 1 0 21 1 0 13 1 0 16 1 0 4 chain 67128 chrY 57227415 + 5141535 5142258 L1HS 6032 + 4639 5366 24671 543 0 4 180 chain 9129 chrY 57227415 + 5146602 5146714 HERVL-int 5654 + 5538 5653 72286 15 0 3 97 chain 41349 chrY 57227415 + 5146715 5147258 MLT2A2 560 + 0 560 33762 28 0 5 258 0 1 4 1 0 106 0 11 65 11 12 70 chain 10768 chrY 57227415 + 5147263 5147434 L1PA16 3655 + 3460 3619 68926 117 3 0 11 2 0 7 16 9 15 chain 18620 chrY 57227415 + 5191076 5191312 L1PA6 6164 + 5924 6160 57979 84 1 3 142 2 0 7 chain 55716 chrY 57227415 + 5197391 5197989 L1PA2 6032 + 5431 6029 27658 598 chain 135853 chrY 57227415 + 5237453 5238954 L1PA4 6152 + 4020 5520 13450 1281 1 0 219 chain 28315 chrY 57227415 + 5261219 5261583 THE1B-int 1605 + 0 368 44389 74 0 4 290 chain 68636 chrY 57227415 + 5287106 5287923 L1PA7 6471 + 5646 6470 24301 440 0 4 208 1 2 156 0 2 12 chain 19685 chrY 57227415 + 5332182 5332410 MER4E 760 + 525 753 56802 228 chain 79093 chrY 57227415 + 5368179 5369199 THE1A-int 1579 + 568 1574 21843 103 30 16 192 4 1 520 0 4 65 1 0 105 chain 25960 chrY 57227415 + 5369204 5369534 THE1A 353 + 0 329 47778 110 1 0 219 chain 13984 chrY 57227415 + 5597624 5597939 L1PB1 5432 + 5114 5399 63622 20 1 0 8 3 2 12 8 4 8 2 0 34 20 19 16 1 0 44 1 0 15 1 0 4 2 0 13 9 0 13 14 11 9 2 0 24 1 0 22 1 0 7 chain 183519 chrY 57227415 + 5619783 5622415 L1PA11 4918 + 1902 4517 10409 291 17 15 24 1 2 6 1 0 224 0 2 70 17 14 167 1 0 186 0 8 214 1 3 333 9 0 6 0 9 183 3 1 140 0 6 210 0 5 83 28 30 50 0 5 17 31 4 47 14 15 38 0 4 17 27 20 44 1 0 12 2 0 66 2 0 15 1 0 20 4 0 9 chain 109111 chrY 57227415 + 5652918 5654160 L1P2 5180 + 798 2041 17169 648 1 0 284 0 1 119 0 1 190 chain 18536 chrY 57227415 + 5697218 5697434 L1PA7 6471 + 6248 6464 58062 216 chain 9746 chrY 57227415 + 5702464 5702577 THE1B-int 1605 + 1486 1600 70943 108 0 1 5 chain 20670 chrY 57227415 + 5771032 5771284 L1PA8 5853 + 4779 5028 55540 133 1 0 97 2 0 19 chain 39932 chrY 57227415 + 5779150 5779941 L1PA6 6164 + 5429 6159 34714 28 46 51 15 0 1 47 205 138 207 0 2 97 2 3 131 3 0 10 chain 470155 chrY 57227415 + 5832636 5838347 L1PA6 6164 + 356 6158 3850 55 5 6 22 23 0 21 7 6 14 7 45 258 4 21 193 7 1 537 0 1 289 6 5 499 27 0 21 0 2 329 0 1 88 0 1 141 0 70 241 0 1 390 0 1 88 2 0 201 0 2 276 0 4 622 0 2 502 0 4 307 0 1 523 0 5 6 chain 431997 chrY 57227415 + 5844490 5850099 HERVL-int 5654 + 1 5654 4722 41 0 1 52 1 0 113 1 0 36 0 2 37 1 2 22 14 16 339 6 1 37 4 1 100 0 1 79 5 4 7 0 1 552 0 11 477 9 12 42 0 1 345 0 1 374 0 7 75 0 1 172 0 11 1214 0 1 82 9 10 139 0 1 15 5 6 407 21 22 347 2 0 6 0 2 173 0 1 93 0 2 101 0 1 18 0 3 36 chain 40654 chrY 57227415 + 5941110 5941560 LTR7 482 + 0 482 34186 264 0 31 10 0 1 176 chain 256732 chrY 57227415 + 5941562 5944727 HERVH-int 3825 + 0 3120 8069 488 2 0 44 69 0 38 24 22 12 29 0 14 1 0 13 7 45 23 1 0 57 0 1 6 0 2 13 0 3 442 15 0 458 8 35 1286 0 1 67 9 11 39 chain 39835 chrY 57227415 + 5945586 5946036 LTR7 482 + 0 482 34789 155 0 1 109 0 31 186 chain 55321 chrY 57227415 + 5947751 5948502 MER4E1 777 + 0 767 27768 48 7 8 83 1 3 132 15 16 213 0 1 38 3 10 200 0 4 11 chain 43137 chrY 57227415 + 5976943 5977476 L1PA7 6471 + 5935 6469 32691 219 5 6 309 chain 10319 chrY 57227415 + 5990619 5990983 MLT2B1 522 + 55 437 69766 92 21 22 11 127 91 27 57 110 29 chain 74266 chrY 57227415 + 5998661 6015384 L1P3 4156 + 10 4108 23011 241 12 11 58 1 0 80 3 0 7 2 0 63 0 1 357 15341 2723 135 1 0 422 chain 4055 chrY 57227415 + 6002292 6002339 MADE1 96 + 48 95 91044 47 chain 11665 chrY 57227415 + 6031270 6031415 L1P3 4156 + 3961 4107 67453 52 0 1 93 chain 2102 chrY 57227415 + 6031417 6031447 L1P3 4156 + 4107 4136 105784 9 1 0 20 chain 94996 chrY 57227415 + 6034878 6035961 L1PA5 6144 + 5063 6144 18908 170 0 1 171 1 0 727 3 1 11 chain 157802 chrY 57227415 + 6094149 6096073 L1PA7 6471 + 4521 6459 11893 25 6 19 265 1 0 769 0 4 18 2 0 838 chain 281331 chrY 57227415 + 6139650 6143224 HERVH-int 3825 + 24 3825 7390 309 1 0 197 1 0 10 1 0 5 0 1 24 1 0 10 1 0 10 4 0 9 0 32 14 9 7 4 1 0 27 2 0 15 2 1 16 21 0 8 0 1 5 2 1 49 1 0 450 16 1 455 4 31 290 0 4 252 1 0 35 0 1 553 1 0 5 1 2 212 9 11 12 1 2 13 20 230 262 0 2 223 chain 107443 chrY 57227415 + 6149503 6150859 L1P1 4361 + 670 2030 17389 32 15 8 90 3 0 6 23 26 203 0 13 756 0 1 113 0 1 86 4 0 25 chain 146180 chrY 57227415 + 6176453 6178222 L1PA4 6152 + 64 6151 12601 242 1 2 251 0 1 393 0 4316 882 chain 18928 chrY 57227415 + 6212855 6213091 MSTA-int 1630 + 1389 1624 57618 167 1 0 68 chain 147065 chrY 57227415 + 6295681 6297402 L1PA4 6152 + 4242 5968 12537 369 0 1 135 1 2 35 1 2 196 0 1 324 0 1 660 chain 409112 chrY 57227415 + 6331415 6337008 L1PA3long 6157 + 1431 6149 5031 340 0 1 51 0 1 4 1 0 1347 1 2 13 929 44 28 0 1 1435 0 6 1201 0 1 243 chain 18299 chrY 57227415 + 6433593 6433799 L1PA4 6152 + 2977 3183 58358 206 chain 66725 chrY 57227415 + 6460462 6461198 L1PA2 6032 + 5288 6024 24766 736 chain 3887 chrY 57227415 + 6491111 6491157 LTR12 884 + 823 869 92229 46 chain 33919 chrY 57227415 + 6498376 6498772 L1PA4 6152 + 4297 4700 38772 25 0 1 25 0 4 314 0 2 32 chain 66724 chrY 57227415 + 6506848 6507586 L1PA2 6032 + 5285 6028 24767 727 0 5 11 chain 54716 chrY 57227415 + 6525976 6526974 L1PA4 6152 + 4968 5968 27967 245 6 0 68 0 1 18 0 1 302 0 6 359 chain 69668 chrY 57227415 + 6577852 6578691 L1PA6 6164 + 5333 6162 24082 472 7 0 325 1 0 24 2 0 8 chain 20372 chrY 57227415 + 6583550 6583770 L1PA5 6144 + 4017 4237 55924 220 chain 5604 chrY 57227415 + 6583784 6583864 MLT2A2 560 + 484 550 82792 8 14 0 58 chain 4314 chrY 57227415 + 6614889 6614941 L1PA17 2846 - 2173 2225 89412 52 chain 503318 chrY 57227415 + 6626789 6632498 L1PA3long 6157 + 4 5856 3021 14 4 5 128 3 4 612 9 137 178 5 8 159 1 0 48 0 1 1402 0 5 1292 0 3 1310 6 7 307 3 4 228 chain 87644 chrY 57227415 + 6662605 6663706 MER11A 1151 + 0 1151 20110 79 0 8 143 1 0 64 0 11 192 0 2 5 7 5 174 1 2 85 2 1 85 0 33 84 0 3 5 3 0 104 1 0 66 chain 202075 chrY 57227415 + 6722173 6724574 L1PA6 6164 + 3737 6149 9637 781 0 3 128 1 0 82 0 3 572 0 2 18 0 1 67 0 2 166 0 1 374 1 0 110 0 1 101 chain 74674 chrY 57227415 + 6748888 6749855 LTR5_Hs 974 + 0 974 22918 279 0 1 9 0 1 177 0 1 100 0 1 9 1 0 78 1 0 163 8 15 16 23 21 103 chain 33426 chrY 57227415 + 6779744 6780204 LTR2 463 + 0 462 39153 270 0 1 88 38 39 64 chain 37895 chrY 57227415 + 6786061 6786576 LTR10C 591 + 0 591 36143 106 0 72 75 7 8 179 1 3 67 0 1 4 0 1 53 6 5 17 chain 474099 chrY 57227415 + 6813860 6819983 L1PA6 6164 + 0 6150 3761 187 0 1 94 7 8 81 1 27 8 26 0 197 0 1 180 0 21 386 0 1 56 1 0 76 0 2 126 0 5 6 19 9 56 18 16 161 1 2 386 2 1 119 9 11 110 29 8 57 0 4 254 0 1 44 0 3 170 1 2 320 1 0 19 8 0 378 0 2 107 1 0 33 6 7 704 0 1 52 1 1 148 1 0 165 1 0 87 0 1 472 0 1 4 1 0 46 0 1 111 6 18 401 1 12 45 8 9 128 chain 53692 chrY 57227415 + 6820052 6820860 L1PA7 6471 + 5630 6468 28326 69 6 4 41 0 1 39 4 0 28 1 23 24 6 7 151 1 12 39 3 4 204 4 5 26 8 9 6 1 0 12 1 2 123 2 0 9 chain 528989 chrY 57227415 + 6852433 6858440 L1PA3long 6157 + 5 6152 1881 147 0 1 102 1 2 61 6 3 5 0 3 447 0 128 931 1 9 584 0 1 833 0 1 678 5 6 1360 1 0 845 chain 180755 chrY 57227415 + 6881263 6883601 L1PA7 6471 + 4127 6467 10555 346 23 23 109 0 11 291 4 0 39 4 3 142 6 0 58 0 1 58 1 0 415 0 1 543 0 1 101 0 1 37 1 3 9 2 3 139 4 0 6 chain 14472 chrY 57227415 + 6891579 6892159 HERVS71-int 4705 + 2557 3019 62932 46 8 7 18 1 0 42 3 1 17 2 0 8 2 1 15 41 34 13 3 1 10 1 0 8 81 66 24 15 12 21 130 51 18 1 0 19 1 0 4 1 0 8 1 0 18 chain 31899 chrY 57227415 + 6899972 6900566 LTR22 571 + 0 531 40416 9 46 0 242 16 5 14 11 12 33 1 2 16 0 1 87 80 69 32 0 2 7 chain 4624 chrY 57227415 + 6930662 6930717 LTR12 884 + 279 334 87679 55 chain 4862 chrY 57227415 + 6965639 6965740 HERVIP10FH-int 2884 + 2731 2824 86360 24 1 0 12 9 8 11 9 3 35 chain 247066 chrY 57227415 + 7032802 7035910 L1PA7 6471 + 3277 6424 8301 112 1 0 4 1 2 217 1 0 169 11 12 281 1 3 165 5 4 56 0 2 499 0 2 310 0 13 147 0 1 262 0 1 84 0 9 165 0 4 338 0 4 164 1 3 114 chain 62405 chrY 57227415 + 7054207 7054993 LTR17 781 + 0 781 25775 84 0 4 210 10 0 28 0 1 17 0 4 426 4 0 7 chain 144725 chrY 57227415 + 7107674 7109787 HERVIP10FH-int 2884 + 782 2820 12711 149 0 1 159 3 4 142 0 4 14 0 3 70 0 1 51 4 1 7 3 0 10 1 0 8 2 1 62 6 1 126 1 0 17 5 2 12 45 25 14 20 3 43 19 7 36 20 9 20 3 2 31 0 5 228 1 0 8 4 5 87 0 1 98 2 1 22 8 7 99 1 0 92 0 1 100 1 0 60 1 0 74 1 0 50 1 0 17 1 0 14 9 3 31 chain 42157 chrY 57227415 + 7110082 7110614 LTR10F 562 + 0 562 33273 204 0 31 43 1 0 284 chain 494683 chrY 57227415 + 7134607 7140253 L1PA3long 6157 + 7 6142 3295 1448 10 9 7 0 1 52 0 1 303 0 1 605 0 3 115 2 0 55 1 2 574 4 0 790 0 485 904 0 3 122 0 1 654 chain 15982 chrY 57227415 + 7149415 7149650 MER75B 242 + 13 242 61046 39 15 15 106 4 0 43 3 1 25 chain 416661 chrY 57227415 + 7170382 7175792 HERV9-int 5642 + 11 5446 4927 149 3 7 418 4 5 106 12 12 8 6 0 84 7 15 31 2 0 13 4 0 42 5 6 33 26 26 10 14 14 118 1 0 8 5 0 126 2 1 33 0 2 101 0 1 223 0 1 802 1 0 65 0 1 184 9 8 548 0 3 344 1 2 291 5 10 412 0 8 472 0 8 72 4 5 119 3 4 484 chain 3106 chrY 57227415 + 7177376 7177411 LTR12F 595 + 68 103 98744 35 chain 75190 chrY 57227415 + 7179864 7180823 LTR5_Hs 974 + 0 974 22797 115 24 13 160 0 1 282 0 20 229 7 14 37 2 0 103 chain 24911 chrY 57227415 + 7231933 7232285 THE1C 375 + 2 363 49413 204 22 30 37 0 2 75 1 0 13 chain 12120 chrY 57227415 + 7233799 7234114 L1PA15 4387 + 4070 4366 66632 30 56 54 31 1 0 22 4 0 10 1 0 48 26 23 26 3 1 12 13 8 21 1 0 10 chain 10983 chrY 57227415 + 7259673 7259798 MER41B 635 + 331 456 68577 125 chain 45175 chrY 57227415 + 7262958 7263517 LTR6B 557 + 0 557 31481 93 0 1 222 0 6 37 0 1 45 9 0 132 1 0 20 chain 5368 chrY 57227415 + 7264038 7264110 LTR12D 1347 + 488 591 67513 48 1 32 23 chain 47639 chrY 57227415 + 7264110 7264760 LTR12D 1347 + 441 1339 30423 66 2 0 29 1 32 84 0 2 45 6 23 229 0 200 188 chain 51664 chrY 57227415 + 7390846 7391601 MER4E1 777 + 12 768 28973 5 1 0 29 20 21 27 0 5 56 6 9 179 1 0 198 33 27 200 chain 41772 chrY 57227415 + 7396451 7396920 L1PA3long 6157 + 4867 5343 33509 102 0 7 367 chain 119172 chrY 57227415 + 7407051 7409663 L1P2 5180 + 461 2974 15661 40 974 867 56 18 27 126 6 7 622 0 2 22 4 0 88 0 1 8 7 4 11 5 0 186 0 1 132 0 2 117 9 13 181 chain 443891 chrY 57227415 + 7428015 7433529 L1PA5 6144 + 0 5862 4498 128 20 34 120 0 1 89 1 12 160 7 10 288 20 20 141 7 6 60 8 7 72 30 21 84 2 228 52 0 1 270 0 2 95 0 1 453 0 1 23 0 4 9 0 2 367 8 79 387 16 24 172 0 1 131 1 2 449 10 8 266 0 2 62 0 8 276 1 0 202 0 5 1027 chain 10186 chrY 57227415 + 7439587 7439772 L1PB1 5432 + 5103 5277 70043 11 1 0 20 1 0 13 1 0 4 12 8 8 2 0 53 2 1 15 1 0 41 chain 39021 chrY 57227415 + 7451910 7452423 LTR6B 557 + 0 543 35342 15 13 42 302 0 1 44 3 0 91 0 1 4 1 2 32 0 1 8 chain 92631 chrY 57227415 + 7511895 7514023 L1PA7 6471 + 5171 6465 19252 257 0 1 8 0 16 24 4 5 19 1 0 40 1 0 4 1 2 77 1 2 167 863 0 101 0 1 94 11 0 318 28 49 109 chain 40059 chrY 57227415 + 7512618 7513112 MER9a2 513 + 0 494 34614 494 chain 96969 chrY 57227415 + 7526233 7527352 L1PA3long 6157 + 4321 6147 18659 139 0 3 323 0 701 462 0 2 54 5 6 136 chain 5823 chrY 57227415 + 7538436 7538597 L1MA9 1812 + 1498 1652 81807 28 1 0 9 18 16 15 3 1 10 6 7 6 1 0 25 13 11 26 chain 28091 chrY 57227415 + 7545967 7546263 AluYd8 298 + 0 296 44732 296 chain 13476 chrY 57227415 + 7554099 7554469 THE1B 368 + 1 368 64346 55 2 0 55 0 3 6 5 3 44 76 84 15 75 65 37 chain 28645 chrY 57227415 + 7562324 7562908 L1PB1 5432 + 4872 5417 43875 5 0 3 124 0 2 77 25 33 16 0 1 5 1 0 8 1 0 10 2 0 3 2 0 9 2 0 52 3 2 14 1 0 42 74 58 10 2 0 24 1 0 23 35 11 13 chain 65233 chrY 57227415 + 7568794 7569654 L1PA6 6164 + 5292 6160 25125 81 0 1 118 21 22 210 1 5 287 6 8 136 chain 27368 chrY 57227415 + 7667741 7668029 AluYa5 310 + 21 309 45742 288 chain 27742 chrY 57227415 + 7668029 7668324 AluYa5 310 + 14 309 45262 295 chain 2861 chrY 57227415 + 7753274 7753307 MER11A 1151 + 110 143 101152 33 chain 186388 chrY 57227415 + 7762960 7765310 L1PA6 6164 + 3775 6157 10281 41 0 8 72 1 0 4 0 1 31 7 8 279 0 1 152 0 2 275 2 0 29 13 14 190 4 5 166 0 1 262 0 16 515 0 1 155 9 10 5 0 1 138 chain 53712 chrY 57227415 + 7830918 7831568 LTR6A 649 + 0 649 28317 432 1 0 217 chain 52942 chrY 57227415 + 7840429 7841079 LTR6A 649 + 0 649 28595 432 1 0 217 chain 200716 chrY 57227415 + 7842705 7845211 L1PA5 6144 + 3363 5880 9702 318 0 2 201 3 6 601 8 9 187 0 1 4 1 0 213 0 1 57 16 17 266 0 1 47 0 2 388 5 4 115 0 1 76 chain 91037 chrY 57227415 + 8017216 8018266 L1PA4 6152 + 4924 5973 19496 1014 1 0 35 chain 119144 chrY 57227415 + 8029466 8030891 L1PA4 6152 + 1847 3273 15672 501 1 0 4 0 1 82 8 9 829 chain 147297 chrY 57227415 + 8116336 8118019 L1PA3long 6157 + 4470 6157 12528 735 0 1 105 0 1 146 0 2 697 chain 72210 chrY 57227415 + 8175913 8176718 L1PA3long 6157 + 4599 5399 23480 249 1 0 529 4 0 22 chain 444973 chrY 57227415 + 8193466 8198950 L1PA4 6152 + 0 5515 4473 365 5 1 90 1 2 274 1 0 193 0 4 1186 0 1 204 2 0 66 0 4 295 1 0 146 7 9 331 2 0 85 0 3 37 0 1 129 4 3 60 2 3 196 1 4 473 0 1 499 1 0 5 1 2 521 0 18 145 0 3 156 chain 146041 chrY 57227415 + 8222600 8224302 L1PA5 6144 + 4430 6132 12612 1702 chain 92089 chrY 57227415 + 8243409 8244514 L1PA5 6144 + 4858 5964 19324 258 5 0 177 0 5 512 1 2 152 chain 4732 chrY 57227415 + 8244775 8244947 MER41E 591 + 26 197 87069 48 101 100 23 chain 190786 chrY 57227415 + 8267371 8269611 L1PA4 6152 + 3263 5520 10077 419 0 1 197 0 1 583 0 11 400 0 1 517 0 3 124 chain 136660 chrY 57227415 + 8298437 8300101 LTR12C 1709 + 0 1709 13370 118 1 4 455 6 7 213 0 40 274 1 0 5 3 1 107 0 4 481 chain 68672 chrY 57227415 + 8310145 8310969 L1HS 6032 + 755 1579 24294 94 0 1 4 1 0 64 6 5 71 1 2 583 chain 93332 chrY 57227415 + 8345290 8346509 L1PA6 6164 + 4963 6156 19140 7 28 0 856 0 1 161 17 18 150 chain 51428 chrY 57227415 + 8425245 8425813 L1PA2 6032 + 5458 6027 29074 387 0 1 181 chain 58783 chrY 57227415 + 8457893 8458579 L1HS 6032 + 1121 1807 26744 686 chain 18670 chrY 57227415 + 8517948 8518191 L1PA6 6164 + 5867 6119 57929 123 5 13 15 0 1 100 chain 39955 chrY 57227415 + 8540946 8541414 L1PA2 6032 + 5561 6032 34694 454 1 4 13 chain 35232 chrY 57227415 + 8803004 8803460 LTR2 463 + 6 463 37876 354 14 15 88 chain 454561 chrY 57227415 + 8804244 8811229 HERVE_a-int 7009 + 156 6991 4274 29 3 1 72 2 0 7 5 3 22 1 0 3 1 0 8 1 0 8 1 0 14 20 14 8 1 0 7 5 3 4 1 0 19 28 0 11 27 25 24 2 1 42 6 5 18 1 0 53 1 0 35 1 0 98 1 0 12 2 1 16 2 1 26 6 5 14 1 0 48 5 3 27 1 0 67 1 0 27 1 0 7 7 6 67 2 1 32 1 0 40 2 0 14 4 3 49 1 0 21 31 35 17 2 1 6 1 0 16 1 0 20 0 3 4 5 0 7 1 0 10 1 0 6 1 0 4 1 0 49 11 9 57 1 0 6 1 0 31 1 0 116 1 0 19 1 0 20 1 0 11 1 0 10 44 35 9 0 5 35 1 0 24 1 2 11 2 1 62 6 5 31 1 0 6 1 0 34 3 2 35 0 6 25 2 1 17 2 1 20 5 4 11 1 0 55 11 24 15 2 1 25 6 4 26 16 11 17 16 13 113 1 0 30 2 1 12 6 5 35 1 0 45 0 1 122 1 0 29 0 1 375 1 0 477 3 0 469 16 17 113 0 1 867 1 2 391 9 0 127 4 5 7 2 0 10 2 1 67 6 5 8 1 0 41 1 0 23 1 0 41 26 27 19 2 1 11 2 1 240 0 11 6 2 0 43 0 1 58 2 1 12 7 4 57 3 1 20 1 0 11 2 1 80 2 0 138 1 0 42 1 0 28 48 42 37 1 0 21 6 5 10 0 1 16 0 1 14 1 0 4 2 1 23 10 8 54 1 0 11 4 0 26 3 0 54 3 1 27 7 6 24 1 0 6 17 14 25 7 5 28 4 2 15 32 24 25 chain 33091 chrY 57227415 + 8811260 8811720 LTR2 463 + 0 463 39446 72 0 1 176 0 1 109 39 40 64 chain 73521 chrY 57227415 + 8829861 8830923 HERV9-int 5642 + 1951 4822 23214 297 0 1 68 5 6 136 0 1 10 1 0 6 67 63 296 5 1800 146 0 14 17 0 2 8 chain 23359 chrY 57227415 + 8862925 8863231 LTR2C 499 + 192 499 51842 189 1 0 4 0 1 50 1 2 61 chain 251089 chrY 57227415 + 8864340 8868295 HERVE-int 4064 + 0 4063 8197 393 0 1 130 0 1 85 1 2 198 0 1 45 1 0 7 0 1 96 0 1 4 1 0 60 5 4 36 21 17 63 4 782 131 0 3 309 702 24 86 9 15 52 1 0 4 0 1 104 4 5 10 9 10 483 1 0 242 2 0 580 0 1 76 chain 37582 chrY 57227415 + 8870941 8871459 LTR2C 499 + 0 499 36347 172 41 20 178 0 1 65 1 2 61 chain 86099 chrY 57227415 + 8893224 8894296 MER11C 1089 + 0 1073 20415 591 5 6 79 1 0 210 0 1 186 chain 18984 chrY 57227415 + 8931632 8931944 L1PA6 6164 + 5849 6161 57568 142 1 0 4 12 13 80 36 0 8 1 37 28 chain 246759 chrY 57227415 + 8956036 8959352 L1PA4 6152 + 3163 6151 8310 84 0 1 1102 0 8 109 0 6 656 0 1 225 463 119 423 0 1 236 1 0 17 chain 8511 chrY 57227415 + 8979999 8980274 LTR12D 1347 + 584 728 73658 88 129 4 17 19 13 22 chain 6014 chrY 57227415 + 8980118 8980184 LTR12D 1347 + 436 502 81024 66 chain 21116 chrY 57227415 + 9010658 9010907 L1PA2 6032 + 5783 6031 54988 222 0 1 13 2 0 12 chain 5804 chrY 57227415 + 9043049 9043202 LTR12 884 + 162 365 81900 42 47 47 11 1 26 28 5 30 19 chain 216489 chrY 57227415 + 9043747 9046913 HERV9-int 5642 + 5 2914 9134 291 0 3 112 0 4 68 0 1 116 13 9 107 0 4 68 17 16 113 21 14 115 159 0 61 9 6 360 9 44 464 1 0 53 4 5 220 132 0 106 0 1 247 7 8 293 chain 106763 chrY 57227415 + 9134177 9135338 L1PA2 6032 + 4870 6032 17463 308 0 1 853 chain 38950 chrY 57227415 + 9187317 9187803 LTR12C 1709 + 1118 1709 35391 106 0 4 188 0 102 107 1 0 84 chain 122152 chrY 57227415 + 9195431 9196774 L1PA2 6032 + 4686 6030 15169 234 0 1 1109 chain 39045 chrY 57227415 + 9238047 9238552 MER9a2 513 + 2 498 35322 147 19 10 339 chain 268378 chrY 57227415 + 9239850 9244572 HERVK9-int 4720 + 58 4717 7751 66 1 0 9 1 0 19 44 44 231 1118 0 12 0 1 88 0 1 4 2 1 438 0 165 62 27 27 28 0 1 128 0 1 112 0 924 20 0 1 62 0 1 186 6 1 122 49 0 117 0 3 667 0 14 416 16 17 4 1 0 45 0 1 298 20 19 286 0 1 4 1 0 12 chain 79061 chrY 57227415 + 9240267 9241300 MER11C 1089 + 40 1073 21853 15 9 12 294 0 1 71 5 6 136 2 0 101 1 0 284 13 11 102 chain 166378 chrY 57227415 + 9573864 9575813 L1PA4 6152 + 3238 5186 11312 660 1 0 369 7 8 218 4 0 330 0 1 136 0 1 88 0 1 136 chain 483728 chrY 57227415 + 9589716 9596940 L1PA3long 6157 + 0 6147 3560 153 9 10 64 2 0 525 0 3 21 0 128 55 1537 0 74 0 1 319 1 10 96 4 5 215 1 3 96 0 11 536 0 1 50 0 1 313 1 0 124 0 12 33 7 315 80 0 1 37 1 0 225 0 4 99 14 0 673 0 2 346 1 0 114 5 0 623 1 0 769 chain 57562 chrY 57227415 + 9590553 9591884 L1HS 6032 + 4716 6032 27088 474 13 0 335 2 0 507 chain 149261 chrY 57227415 + 9634917 9636597 L1PA4 6152 + 3545 5227 12404 520 0 1 901 0 1 259 chain 11733 chrY 57227415 + 9654233 9654366 MER11B 1079 + 0 134 67344 8 0 1 125 chain 77260 chrY 57227415 + 9655213 9656157 MER11C 1089 + 121 1073 22255 287 0 6 149 6 5 261 1 0 120 1 3 41 0 2 78 chain 68350 chrY 57227415 + 9663602 9664409 L1PA4 6152 + 4685 5493 24370 565 1 2 241 chain 232785 chrY 57227415 + 9731131 9733819 L1PA4 6152 + 3187 5879 8669 501 0 1 667 0 4 275 3 1 373 11 12 280 1 0 252 0 1 325 chain 257045 chrY 57227415 + 9843334 9846291 L1PA3long 6157 + 3192 6157 8058 70 0 1 410 0 1 219 0 1 463 0 4 840 4 5 951 chain 493498 chrY 57227415 + 9879855 9885890 L1PA4 6152 + 0 5968 3326 144 0 1 292 1 21 935 0 1 488 0 1 436 0 1 153 17 28 103 0 1 521 0 4 47 1 0 471 0 24 9 1 2 204 0 2 223 0 1 52 1 0 32 0 1 74 0 1 473 2 3 180 0 1 53 141 0 323 0 1 510 0 3 148 chain 249573 chrY 57227415 + 9928082 9931520 L1PA7 6471 + 3023 6469 8252 104 0 9 89 11 19 161 8 0 94 1 0 315 70 63 131 2 0 112 12 13 102 15 15 24 0 2 86 19 16 32 2 0 254 1 5 175 1 2 71 10 9 132 8 5 424 0 1 133 8 7 72 0 2 121 4 5 445 0 8 176 1 0 12 chain 562497 chrY 57227415 + 9941130 9947151 L1HS 6032 + 2 6030 135 2215 0 7 3806 chain 44473 chrY 57227415 + 9980575 9981144 LTR22 571 + 0 571 31844 474 5 7 90 chain 2911 chrY 57227415 + 9992983 9993014 THE1A 353 + 322 353 100752 31 chain 36920 chrY 57227415 + 9994704 9995105 L1PA3long 6157 + 5754 6155 36796 401 chain 45650 chrY 57227415 + 10054653 10055236 LTR14C 587 + 0 587 31232 60 1 2 322 0 1 25 0 1 40 1 2 134 chain 83342 chrY 57227415 + 10061737 10062737 L1PA5 6144 + 5128 6128 20956 166 1 0 221 2 3 610 chain 9860 chrY 57227415 + 10087819 10087942 L1HS 6032 + 15 138 70700 123 chain 37329 chrY 57227415 + 10091390 10091852 LTR2 463 + 0 463 36530 372 8 9 82 chain 63424 chrY 57227415 + 10133572 10134302 L1PA3long 6157 + 3904 4634 25541 730 chain 74309 chrY 57227415 + 10176031 10176921 LTR5A 1029 + 142 1029 23001 5 1 0 751 2 0 131 chain 47098 chrY 57227415 + 10193043 10193602 L1PA3long 6157 + 5597 6155 30613 410 0 1 7 1 0 20 14 13 107 chain 143152 chrY 57227415 + 10208531 10210146 L1PA3long 6157 + 4539 6157 12846 964 0 1 473 0 2 178 chain 138072 chrY 57227415 + 10220244 10221763 L1PA2 6032 + 4513 6029 13262 1394 1 0 112 2 0 10 chain 71765 chrY 57227415 + 11045679 11046564 L1PA6 6164 + 5279 6162 23604 34 1 2 665 1 0 23 14 14 137 2 0 8 chain 6103 chrY 57227415 + 11123702 11123942 Tigger5 388 + 104 336 80715 25 93 91 15 1 0 25 2 0 11 34 31 34 chain 9542 chrY 57227415 + 11180076 11180282 MSTA-int 1630 + 1405 1608 71386 27 58 56 28 6 5 87 chain 28109 chrY 57227415 + 11218702 11220671 L1MA3 4352 + 1622 3445 44698 31 1 0 43 1515 1363 41 8 16 286 4 3 40 chain 126728 chrY 57227415 + 11284159 11285644 L1PA4 6152 + 4383 5878 14444 664 0 1 256 0 4 86 0 4 419 0 1 60 chain 497394 chrY 57227415 + 11358833 11364930 L1PA6 6164 + 26 6146 3224 108 1 0 10 0 1 62 0 1 28 1 3 174 3 0 54 1 0 50 0 2 9 15 16 20 0 3 390 6 7 244 0 1 711 1 0 181 0 1 230 1 2 56 0 2 433 6 7 308 0 7 49 1 2 107 0 1 392 1 0 5 2 0 113 0 3 1908 0 3 56 1 2 102 1 0 112 1 2 9 1 0 133 chain 68857 chrY 57227415 + 11393169 11393913 L1HS 6032 + 3450 4194 24245 744 chain 184179 chrY 57227415 + 11405801 11408043 L1P2 5180 + 1639 3864 10377 389 1 2 354 0 1 972 26 15 130 1 0 191 0 2 28 15 6 135 chain 275760 chrY 57227415 + 11423886 11426993 L1PA2 6032 + 2919 6029 7557 662 0 1 1207 0 1 566 1 2 671 chain 78546 chrY 57227415 + 11756989 11757837 L1HS 6032 + 5167 6016 21965 265 0 1 583 chain 6585 chrY 57227415 + 11800659 11800758 L1MA7 2200 + 1758 1856 79030 77 6 5 16 chain 6781 chrY 57227415 + 11823383 11823477 MER39B 650 + 509 602 78379 4 1 0 89 chain 220737 chrY 57227415 + 11846689 11850458 L1PA13 3608 + 113 3468 9023 22 32 28 14 3 0 24 28 17 68 21 19 17 2 1 93 1 0 12 1 0 20 0 2 7 23 13 11 1 0 16 6 4 15 3 1 16 5 4 94 1 2 85 10 15 35 13 14 109 0 1 487 5 0 46 24 22 441 72 70 15 0 1 15 1 0 57 14 14 64 5 6 16 4 0 92 3 4 61 356 0 25 2 1 356 6 7 157 5 4 52 13 14 162 2 1 78 1 0 14 14 10 89 2 0 16 3 1 6 0 2 36 1 0 55 3 0 6 6 4 44 9 5 20 chain 194040 chrY 57227415 + 11864188 11866654 L1PA7 6471 + 3883 6362 9925 106 0 1 14 13 6 231 0 4 241 1 2 154 0 2 311 1 0 449 1 0 124 12 11 9 0 1 4 0 12 51 1 0 681 0 2 33 0 1 29 chain 25564 chrY 57227415 + 11901040 11901411 L1PB4 2604 + 2132 2498 48380 154 2 0 91 4 0 6 1 3 71 10 9 32 chain 229059 chrY 57227415 + 11934589 11937552 L1PA4 6152 + 2732 5358 8774 874 343 0 274 0 1 467 0 4 862 0 1 143 chain 105780 chrY 57227415 + 12012131 12013605 L1PA3long 6157 + 4706 6156 17591 150 25 0 451 0 3 5 6 3 696 1 3 135 1 0 4 chain 22399 chrY 57227415 + 12025219 12025499 L1PA5 6144 + 5866 6142 53275 269 4 0 7 chain 85935 chrY 57227415 + 12035018 12036024 L1PA4 6152 + 4290 5299 20457 39 11 12 204 0 1 108 0 1 644 chain 500109 chrY 57227415 + 12039402 12045518 L1PA3long 6157 + 20 6154 3125 554 0 1 135 0 7 19 2 3 498 1 0 13 5 6 725 0 1 224 0 2 574 20 24 25 0 3 836 0 1 217 1 0 217 2 0 894 0 1 552 0 1 455 1 0 146 chain 131949 chrY 57227415 + 12045534 12047077 L1PA4 6152 + 3948 5493 13832 1353 0 1 177 0 1 13 chain 411535 chrY 57227415 + 12057056 12062917 L1PA6 6164 + 0 6159 5011 259 1 2 123 32 28 329 6 3 45 0 17 393 0 1 179 0 1 85 7 11 686 1 0 21 8 9 133 0 2 63 0 2 82 0 2 8 41 3 108 5 1 195 0 1 390 7 8 80 0 1 4 1 0 336 9 10 82 12 9 327 8 99 35 6 8 111 0 1 173 0 3 23 483 694 127 5 11 40 0 1 351 6 7 287 0 1 148 chain 10615 chrY 57227415 + 12074552 12074690 MSTA 426 + 264 405 69199 44 3 6 91 chain 5659 chrY 57227415 + 12082830 12082900 L1PA6 6164 + 4343 4413 82515 70 chain 115368 chrY 57227415 + 12082926 12084331 L1PA6 6164 + 4414 5869 16333 158 0 13 531 0 1 221 0 1 344 1 36 150 chain 27140 chrY 57227415 + 12111141 12111446 L1PA3long 6157 + 5852 6157 46065 305 chain 49237 chrY 57227415 + 12126096 12126661 L1PA4 6152 + 5321 5887 29853 450 0 1 115 chain 36778 chrY 57227415 + 12129720 12130195 L1PA6 6164 + 4648 5116 36900 25 1 0 133 7 0 246 0 1 63 chain 22116 chrY 57227415 + 12130196 12130461 L1PA6 6164 + 5118 5382 53677 197 1 0 67 chain 61381 chrY 57227415 + 12130461 12131235 L1PA6 6164 + 5385 6162 26013 447 1 0 171 8 16 137 4 0 6 chain 26850 chrY 57227415 + 12134564 12134874 L1PA3long 6157 + 5847 6157 46475 310 chain 523465 chrY 57227415 + 12134981 12141002 L1PA3long 6157 + 124 6157 2114 60 0 1 648 0 1 415 1 0 509 0 1 506 2 4 164 0 1 263 1 0 229 0 1 362 1 0 1006 0 1 503 0 3 281 1 2 912 6 0 15 0 7 61 1 2 67 0 1 7 chain 80535 chrY 57227415 + 12171238 12172195 L1PA5 6144 + 2215 3205 21526 415 0 32 95 0 1 447 chain 2713 chrY 57227415 + 12180104 12180168 L1MC2 1988 + 1777 1842 102271 26 20 21 18 chain 408812 chrY 57227415 + 12180824 12185866 L1PA4 6152 + 1 5030 5036 38 15 0 83 14 0 20 1 15 466 8 6 768 5 6 77 5 6 230 1 0 274 1 2 181 3 1 201 1 0 269 0 1 118 0 1 339 1 0 4 0 1 63 2 0 6 0 1 696 6 0 6 4 10 196 0 1 202 0 1 53 0 1 263 5 6 417 chain 23040 chrY 57227415 + 12189378 12189814 LTR12 884 + 0 574 52305 25 1 0 37 41 0 101 1 3 110 0 67 35 69 180 16 chain 85272 chrY 57227415 + 12220444 12221369 L1PA2 6032 + 5106 6031 20578 925 chain 9345 chrY 57227415 + 12246717 12246875 HERVE_a-int 7009 + 140 289 71829 14 5 2 28 4 2 72 2 0 7 5 3 21 chain 15085 chrY 57227415 + 12258329 12259328 L1PB1 5432 + 4891 5277 62168 104 722 119 24 1 0 4 22 17 9 4 2 50 2 1 14 2 1 41 chain 33330 chrY 57227415 + 12311705 12312181 LTR15 485 + 0 478 39233 107 0 1 16 4 0 26 0 2 4 0 1 124 0 4 59 3 2 21 8 9 61 1 0 5 2 0 14 0 1 21 chain 34278 chrY 57227415 + 12320968 12321439 LTR15 485 + 0 478 38509 107 0 1 42 0 2 125 0 4 88 32 34 34 1 0 5 2 0 14 0 1 21 chain 9355 chrY 57227415 + 12321452 12321586 HERVK14-int 1672 + 24 156 71801 6 1 0 11 1 0 37 0 1 8 2 1 68 chain 29239 chrY 57227415 + 12327432 12327775 LTR14A 344 + 0 344 42984 123 0 1 220 chain 60241 chrY 57227415 + 12352250 12352938 SVA_B 1603 + 878 1599 26311 42 4 0 30 0 1 11 0 40 589 4 0 8 chain 16555 chrY 57227415 + 12463845 12464053 LTR7 482 + 254 469 60304 5 0 2 24 6 10 12 0 1 161 chain 31645 chrY 57227415 + 12477370 12477829 MER4A1 472 + 0 462 40631 184 17 18 178 23 25 57 chain 29306 chrY 57227415 + 12497710 12498026 AluYb8 318 + 0 313 42882 132 3 0 181 chain 31749 chrY 57227415 + 12504695 12505132 MLT2A1 477 + 0 477 40540 167 6 3 9 0 1 23 0 1 51 1 10 119 5 1 10 9 45 37 chain 77121 chrY 57227415 + 12548932 12549866 L1PA7 6471 + 4799 5741 22280 752 4 5 66 0 7 112 chain 462595 chrY 57227415 + 12569574 12575065 L1PA4 6152 + 3 5519 4063 585 9 7 575 0 3 280 0 4 916 0 8 385 0 5 303 0 2 107 1 0 77 1 3 29 0 1 263 0 1 120 3 0 210 0 2 459 0 4 191 2 0 337 5 6 633 chain 172921 chrY 57227415 + 12575696 12577870 Harlequin-int 5206 + 429 2609 10956 85 0 3 153 5 4 4 1 0 157 0 2 9 0 1 14 1 0 235 14 10 55 11 14 936 0 4 494 chain 13369 chrY 57227415 + 12581309 12581517 L1MA1 4479 + 3272 3477 64513 68 1 2 5 1 0 41 2 0 43 10 9 37 chain 13795 chrY 57227415 + 12649239 12649581 L1PB1 5432 + 5114 5424 63891 24 30 24 5 2 0 53 2 1 16 1 0 41 7 6 12 1 0 5 64 48 21 1 0 21 1 0 13 1 0 16 1 0 4 chain 87142 chrY 57227415 + 12685409 12686624 MER4-int 2692 + 600 1836 20205 90 0 2 107 8 10 103 1 0 64 0 1 8 2 1 29 0 3 45 0 2 13 0 3 21 1 0 91 0 3 8 1 0 5 0 4 131 14 0 50 0 16 55 2 3 280 1 2 4 0 1 81 chain 38353 chrY 57227415 + 12800748 12801232 LTR15 485 + 0 485 35811 144 15 15 158 0 2 158 1 0 8 chain 5879 chrY 57227415 + 12871555 12871671 MLT1A 405 + 261 366 81555 21 23 13 48 4 3 20 chain 127098 chrY 57227415 + 12878114 12879566 SVA_D 2077 + 16 2077 14407 526 0 80 79 0 40 148 0 437 38 0 50 40 0 1 181 0 1 440 chain 30997 chrY 57227415 + 12948715 12949191 L1PA8A 6298 + 5821 6291 41128 15 0 14 15 39 19 280 15 16 6 2 0 8 5 6 91 chain 473895 chrY 57227415 + 13004248 13031880 L1PA5 6144 + 0 6143 3771 121 0 14 69 1 0 1215 0 1 4 1 0 389 5 12 6 7 0 48 0 1 419 41 25 16 0 1 4 1 0 109 0 2 524 0 1 17 0 1 672 6 0 202 0 1 642 21482 0 112 1 0 192 12 12 64 0 1 397 1 0 841 3 0 8 chain 35281 chrY 57227415 + 13008831 13009241 L1PA5 6144 + 4569 4981 37840 214 0 2 196 chain 396539 chrY 57227415 + 13034317 13039178 L1PA6 6164 + 1266 6159 5206 1055 14 7 598 0 1 94 0 1 162 6 7 49 0 4 187 0 1 59 0 1 16 5 6 9 0 1 168 6 0 89 0 2 171 7 8 118 0 1 30 0 2 48 6 7 205 4 3 432 0 2 84 1 0 7 0 1 19 0 1 86 1 0 75 0 5 29 0 1 4 1 0 198 0 4 90 0 19 237 5 4 333 7 8 139 2 0 5 chain 24871 chrY 57227415 + 13045678 13045967 AluY 311 + 19 302 49490 222 6 0 61 chain 491254 chrY 57227415 + 13071631 13077898 L1PA6 6164 + 0 6156 3391 160 2 1 98 27 27 223 1 0 67 0 1 12 0 4 113 101 1 108 0 1 8 0 1 494 0 1 144 0 5 171 1 0 685 8 0 149 7 9 89 0 3 5 3 0 15 8 1 355 9 7 226 0 1 5 0 1 136 18 1 626 10 9 50 0 3 39 2 3 48 0 2 90 0 3 790 0 1 153 2 1 41 0 1 125 1 2 116 0 1 499 2 0 225 chain 8310 chrY 57227415 + 13072334 13072435 L1PA6 6164 + 1447 1553 72808 17 0 5 84 chain 34542 chrY 57227415 + 13088044 13088541 LTR19A 502 + 0 502 38327 219 9 10 8 1 0 74 1 2 22 7 10 112 8 9 36 chain 242375 chrY 57227415 + 13100773 13103462 L1PA3long 6157 + 3217 5909 8416 1178 1 0 889 0 4 621 chain 33265 chrY 57227415 + 13111053 13111527 LTR15 485 + 0 478 39292 103 1 2 19 4 0 26 0 2 4 0 1 107 0 1 11 8 12 76 0 1 72 8 5 12 4 5 19 chain 35061 chrY 57227415 + 13120053 13120450 L1PA4 6152 + 4609 5018 37979 273 0 12 124 chain 36008 chrY 57227415 + 13121826 13122297 LTR15 485 + 0 478 37408 107 0 1 42 0 2 125 0 4 88 9 11 57 1 0 5 2 0 14 0 1 21 chain 36979 chrY 57227415 + 13168257 13168804 LTR10F 562 + 38 535 36750 127 1 0 60 59 6 153 0 1 70 0 1 44 10 12 23 chain 275556 chrY 57227415 + 13186047 13189678 L1P2 5180 + 2 3641 7567 148 1 0 50 1 0 47 5 4 28 4 5 16 29 30 77 0 1 33 0 2 36 5 6 30 1 0 48 8 7 78 0 2 137 1 0 6 1 0 475 0 1 130 0 1 260 0 1 189 0 4 98 2 1 207 10 11 204 1 2 206 0 3 550 1 0 36 8 0 47 5 6 197 0 2 85 0 1 12 0 1 118 chain 7550 chrY 57227415 + 13216929 13217505 L1M3f 2199 + 794 1341 75995 34 437 408 63 1 0 5 5 6 31 chain 41888 chrY 57227415 + 13252526 13253036 MER9a2 513 + 0 513 33432 387 0 1 66 0 2 57 chain 363079 chrY 57227415 + 13254389 13258853 HERVK9-int 4720 + 54 4720 5767 4 1 0 66 1 0 7 2 1 26 7 6 149 0 2 75 14 18 870 0 4 35 4 6 88 0 1 4 1 0 17 0 2 44 0 3 105 0 2 112 1 0 27 0 3 388 26 200 424 0 4 241 0 2 160 0 1 395 1 2 899 0 1 63 0 2 207 chain 41628 chrY 57227415 + 13258853 13259365 MER9a2 513 + 0 513 33608 18 5 6 489 chain 180798 chrY 57227415 + 13283975 13286477 Harlequin-int 5206 + 134 3426 10554 12 4 1 75 6 5 13 0 2 116 0 5 122 3 0 273 0 3 125 0 778 291 4 10 295 3 2 229 5 4 247 6 12 355 140 140 132 4 3 42 chain 7542 chrY 57227415 + 13321306 13321396 MER4-int 2692 + 2590 2680 76024 90 chain 25187 chrY 57227415 + 13332001 13332426 L1P3 4156 + 3703 4132 48969 51 24 25 53 12 15 164 7 5 27 11 16 48 2 0 7 2 1 17 chain 34662 chrY 57227415 + 13338697 13339205 HERV1_LTRc 486 + 0 479 38245 9 0 9 102 1 0 4 0 1 90 13 0 11 16 0 69 23 14 170 chain 35512 chrY 57227415 + 13347042 13347858 HERV1_LTRc 486 + 0 486 37717 71 1 0 19 13 5 121 20 7 70 5 0 49 9 8 12 302 0 124 chain 34789 chrY 57227415 + 13350613 13351060 LTR2 463 + 0 463 38169 71 0 6 31 0 6 12 0 3 137 1 2 155 2 1 12 0 1 26 chain 34979 chrY 57227415 + 13429537 13430085 LTR10F 562 + 0 562 38028 122 23 0 95 0 14 17 1 2 114 0 11 13 44 56 54 3 2 62 chain 3779 chrY 57227415 + 13489221 13489271 LTR76 689 + 152 209 92994 36 0 1 7 0 6 7 chain 46360 chrY 57227415 + 13494522 13495139 L1P3 4156 + 2833 3459 30902 20 0 1 239 0 4 55 10 12 66 0 4 37 0 1 101 4 0 70 0 1 15 chain 532503 chrY 57227415 + 13524018 13530044 L1PA3long 6157 + 1 6148 1732 152 0 1 210 0 1 403 8 136 1293 0 1 892 0 1 49 0 1 643 0 1 633 0 1 1486 14 0 243 chain 32035 chrY 57227415 + 13570718 13571198 L1P1 4361 + 1 502 40323 119 53 81 95 1 0 158 6 0 48 chain 44834 chrY 57227415 + 13605506 13606276 L1PA8 5853 + 5117 5853 31678 18 110 79 307 0 2 43 1 0 14 5 6 22 2 0 70 12 10 12 0 1 34 10 9 16 1 0 93 chain 7101 chrY 57227415 + 13627042 13627340 MER4B 649 + 349 629 77259 17 3 0 19 82 70 23 1 0 7 6 5 19 74 73 47 chain 7028 chrY 57227415 + 13628003 13628090 LTR12 884 + 664 751 77507 87 chain 321071 chrY 57227415 + 13629857 13634049 HERV9-int 5642 + 1464 5581 6385 880 0 6 120 0 1 20 2 3 667 1 0 4 0 1 200 0 2 57 87 8 116 0 1 319 0 1 41 2 1 27 19 11 231 0 1 9 6 7 514 1 2 313 0 3 409 24 22 38 2 0 26 1 0 56 chain 6183 chrY 57227415 + 13631808 13631880 HERV9-int 5642 + 1453 1525 79248 72 chain 56530 chrY 57227415 + 13636774 13637612 LTR12 884 + 0 880 27416 78 12 144 155 2 0 51 1 5 325 92 0 122 chain 19391 chrY 57227415 + 13644540 13644866 L1PA13 3608 + 502 825 57137 14 2 0 18 1 0 96 2 0 15 57 58 17 0 1 104 chain 294831 chrY 57227415 + 13682368 13686577 L1PA8 5853 + 1260 5853 6989 149 16 6 40 22 23 49 0 1 205 17 341 70 4 5 255 7 6 312 1 33 123 4 5 24 2 0 5 6 8 47 0 1 252 28 27 106 0 8 25 1 4 146 7 7 110 0 1 85 1 2 19 9 18 214 0 2 6 1 2 21 0 1 147 7 6 545 0 1 37 0 14 261 1 0 60 13 15 375 0 2 5 3 0 64 7 6 20 1 3 24 10 8 61 29 27 25 13 12 18 2 1 92 chain 522023 chrY 57227415 + 13691338 13697314 L1PA3long 6157 + 1 6151 2180 151 0 1 415 0 4 204 0 128 853 1 2 560 0 1 49 1 0 897 0 4 310 0 25 431 0 3 251 0 3 61 0 4 934 1 0 147 0 1 399 0 1 311 chain 24719 chrY 57227415 + 13703220 13703485 AluYa5 310 + 45 310 49694 265 chain 521502 chrY 57227415 + 13721951 13728062 L1PA4 6152 + 6 6122 2206 298 17 16 256 1 0 108 0 1 23 12 5 28 7 9 486 0 1 9 1 0 1137 0 4 538 0 1 169 0 2 2432 0 1 126 5 7 375 0 1 83 chain 5662 chrY 57227415 + 13733039 13733147 L1PB1 5432 + 5308 5408 82501 15 12 9 14 2 0 24 1 0 21 1 0 13 1 0 4 chain 74821 chrY 57227415 + 13824683 13825619 LTR13 1007 + 7 959 22888 66 2 0 44 0 4 260 4 5 64 0 1 233 0 5 6 0 5 223 0 2 34 chain 3871 chrY 57227415 + 13832112 13832154 LTR12C 1709 + 676 718 92347 42 chain 74419 chrY 57227415 + 13873583 13874628 MER11C 1089 + 0 1063 22980 247 0 9 61 0 4 65 1 0 147 70 71 86 1 5 4 1 0 29 19 20 117 0 1 54 1 0 117 0 1 25 chain 108527 chrY 57227415 + 13887678 13889346 LTR12C 1709 + 0 1707 17248 188 109 108 42 8 51 75 4 41 36 5 6 10 0 3 13 1 2 29 5 6 124 41 0 99 3 4 78 0 2 139 0 1 52 12 9 97 20 13 391 40 39 13 0 2 34 chain 3137 chrY 57227415 + 13888327 13888368 LTR12C 1709 + 852 893 50645 41 chain 455936 chrY 57227415 + 13889459 13895182 HERV9-int 5642 + 12 5642 4237 158 4 3 164 0 1 232 0 1 225 2 1 116 4 0 159 79 0 35 4 0 97 0 1 412 1 0 413 0 1 1024 0 25 301 7 0 500 0 8 496 0 2 473 0 1 364 9 8 224 5 3 39 2 0 26 3 2 57 1 0 14 56 27 17 chain 14806 chrY 57227415 + 13897624 13897805 LTR12C 1709 + 769 949 62522 68 1 0 112 chain 3085 chrY 57227415 + 13897867 13897902 LTR12C 1709 + 683 718 98911 35 chain 531856 chrY 57227415 + 13909274 13915419 L1PA3long 6157 + 10 6157 1757 421 0 1 301 4 5 1528 1 3 49 0 3 639 0 1 209 3 1 540 1 0 795 0 5 620 14 0 7 1 0 366 0 3 305 3 7 338 chain 514892 chrY 57227415 + 13951827 13957976 L1PA2 6032 + 9 6032 2524 145 1 0 98 5 4 61 1 0 427 8 9 14 139 11 116 0 1 2248 0 2 38 3 0 5 1 4 368 0 2 196 0 1 754 1 0 1514 1 0 5 chain 6131 chrY 57227415 + 13978006 13978102 THE1A-int 1579 + 0 95 80607 35 11 10 50 chain 15371 chrY 57227415 + 13991607 13991802 THE1A 353 + 0 194 61830 111 1 0 83 chain 542526 chrY 57227415 + 14012531 14018535 L1PA2 6032 + 2 6032 1172 69 0 1 113 0 1 20 0 1 45 5 4 1147 0 1 1165 1 0 569 0 4 1371 1 0 672 1 0 724 0 22 101 chain 83682 chrY 57227415 + 14041200 14042331 SVA_E 1901 + 22 1889 20872 302 3 0 150 0 40 63 2 78 53 0 630 107 0 10 7 36 26 24 7 9 9 3 0 353 6 0 6 chain 29726 chrY 57227415 + 14067685 14068124 L1MA1 4479 + 2998 3422 42331 13 2 1 149 2 0 14 4 0 75 4 3 10 5 0 10 0 1 115 3 0 33 chain 234047 chrY 57227415 + 14102206 14105113 L1P1 4361 + 1 2969 8637 39 1 8 178 0 58 290 10 9 118 7 0 495 55 55 177 1 0 365 0 2 218 5 8 5 3 0 903 1 4 36 chain 4515 chrY 57227415 + 14107777 14107830 LTR46 455 + 0 53 88234 53 chain 81473 chrY 57227415 + 14133175 14134199 LTR5A 1029 + 0 1029 21337 146 7 6 270 0 4 122 17 17 271 1 4 122 1 0 67 chain 144673 chrY 57227415 + 14153944 14155642 L1PA5 6144 + 4428 6144 12713 200 1 0 1140 0 1 30 0 17 155 1 2 171 chain 28364 chrY 57227415 + 14197083 14197390 AluYb8 318 + 0 307 44324 209 1 0 76 0 1 21 chain 469264 chrY 57227415 + 14206201 14212361 L1PA6 6164 + 4 6147 3881 150 5 0 7 0 5 857 1 0 48 9 12 172 7 8 169 3 4 16 1 0 55 1 0 688 6 12 127 22 0 480 5 12 259 1 0 89 12 11 4 0 1 114 1 0 387 40 18 23 9 10 197 0 1 4 1 0 46 6 6 60 2 3 15 1 0 5 0 1 188 1 0 4 0 1 79 22 22 138 0 1 106 0 1 29 6 4 97 7 11 313 0 1 501 0 1 34 0 6 530 chain 39863 chrY 57227415 + 14224439 14224892 L1PA3long 6157 + 5703 6156 34766 453 chain 489476 chrY 57227415 + 14282269 14288113 L1PA4 6152 + 104 5969 3432 1052 0 3 281 0 2 498 0 2 1314 0 3 153 0 1 519 0 1 325 1 0 25 4 0 15 0 13 1253 0 1 404 chain 73569 chrY 57227415 + 14298403 14299293 L1PA7 6471 + 5350 6241 23199 132 0 1 80 0 1 85 4 1 481 0 1 20 0 1 88 chain 16602 chrY 57227415 + 14309710 14310009 LTR12C 1709 + 928 1192 60265 180 86 51 33 chain 3210 chrY 57227415 + 14309890 14309976 LTR12C 1709 + 670 715 73741 15 47 6 24 chain 3210 chrY 57227415 + 14310009 14310095 LTR12C 1709 + 748 877 73741 19 52 95 15 chain 97211 chrY 57227415 + 14314392 14315843 LTR12C 1709 + 84 1709 18634 106 105 106 42 0 43 33 10 9 43 2 0 256 0 118 157 0 41 48 26 32 89 24 0 17 11 4 399 6 5 77 chain 3662 chrY 57227415 + 14348062 14348108 MER4D1 891 + 837 883 93901 46 chain 129258 chrY 57227415 + 14427907 14429461 LTR12C 1709 + 0 1709 14114 309 0 1 4 1 0 385 0 159 253 1 0 5 3 1 107 0 4 191 4 1 138 3 1 150 chain 4766 chrY 57227415 + 14453000 14453057 Charlie1b 519 + 143 200 86884 57 chain 208365 chrY 57227415 + 14460769 14463515 L1PA7 6471 + 3737 6467 9406 91 24 0 11 1 0 155 28 19 25 10 11 136 1 2 532 0 3 81 2 0 5 2 4 186 0 2 204 1 0 6 1 2 390 0 4 99 1 0 430 7 17 307 2 0 8 chain 4522 chrY 57227415 + 14506208 14506258 LTR12E 1234 + 691 741 88206 50 chain 100478 chrY 57227415 + 14512632 14513923 LTR12C 1709 + 0 1709 18241 106 0 1 401 6 7 135 0 278 184 17 8 83 0 5 16 0 4 226 0 8 20 13 143 84 chain 212921 chrY 57227415 + 14540023 14543139 L1PA7 6471 + 530 6465 9235 27 0 1 37 172 139 60 1 2 166 0 29 6 29 0 216 0 4 35 14 33 68 3 4 964 7 8 237 0 2 68 2 0 59 12 18 238 12 2 186 0 2832 160 0 1 177 1 0 13 9 15 16 12 4 100 1 0 8 chain 173156 chrY 57227415 + 14564576 14567020 L1PA7 6471 + 758 3203 10944 23 0 1 31 24 89 31 27 28 18 3 18 256 1 20 322 0 1 287 1 2 257 4 2 161 7 13 7 5 0 314 1 2 290 0 1 124 103 0 147 chain 10191 chrY 57227415 + 14637084 14637229 L1PA7 6471 + 6322 6465 70031 124 0 1 5 1 0 7 2 0 6 chain 147990 chrY 57227415 + 14672558 14674194 L1PA2 6032 + 4396 6028 12482 291 0 2 1096 6 0 243 chain 86554 chrY 57227415 + 14714576 14715782 L1PA7 6471 + 5252 6459 20309 75 0 6 219 9 9 60 6 9 144 2 1 179 0 3 14 22 0 30 7 9 78 1 2 50 1 9 109 1 2 199 chain 26121 chrY 57227415 + 14735603 14735945 THE1C-int 1605 + 15 415 47534 59 2 0 37 0 60 157 0 1 4 1 0 82 chain 230879 chrY 57227415 + 14771849 14775162 L1PA7 6471 + 3250 6466 8723 36 7 0 236 3 4 84 3 4 398 6 0 42 6 5 110 0 1 45 0 1 34 1 0 389 1 0 310 4 0 47 1 6 13 1 0 4 5 6 306 161 74 207 3 0 8 2 1 6 0 1 371 0 1 49 0 1 40 0 1 47 0 1 43 4 5 29 0 1 8 4 3 80 8 9 36 0 1 43 7 4 65 chain 23930 chrY 57227415 + 14785485 14785795 AluY 311 + 2 311 50895 46 10 11 71 1 2 173 3 0 6 chain 501263 chrY 57227415 + 14861136 14867059 L1PA3long 6157 + 6 5982 3088 22 0 20 81 1 15 151 0 1 20 4 5 642 3 0 14 1 0 245 0 1 312 0 1 1161 1 0 12 0 5 387 0 2 62 0 1 4 2 1 507 0 15 669 0 1 412 2 0 143 4 5 286 0 1 100 1 0 86 2 0 586 chain 6676 chrY 57227415 + 14875482 14875564 L1PA7 6471 + 5774 5856 78716 82 chain 11955 chrY 57227415 + 14875564 14875723 L1PA7 6471 + 5859 6018 66912 159 chain 33941 chrY 57227415 + 14875729 14876161 L1PA7 6471 + 6025 6468 38750 138 1 0 53 0 1 215 0 11 25 chain 3320 chrY 57227415 + 14922603 14922641 MLT1G 592 + 249 287 96845 38 chain 181694 chrY 57227415 + 14922999 14925040 L1HS 6032 + 1676 3723 10515 402 0 2 383 0 1 804 0 3 452 chain 41650 chrY 57227415 + 14926474 14927037 LTR19B 566 + 0 563 33592 466 13 12 35 10 11 39 chain 5237 chrY 57227415 + 14943900 14943965 THE1B 368 + 20 90 84517 17 0 5 48 chain 4730 chrY 57227415 + 14944801 14944851 L1PA3long 6157 + 5898 5948 87081 50 chain 17146 chrY 57227415 + 14944852 14945046 L1PA3long 6157 + 5948 6142 59641 194 chain 248932 chrY 57227415 + 14949163 14952104 L1PA3long 6157 + 741 3758 8272 91 8 8 349 2 5 1026 0 66 295 0 3 580 0 1 231 0 3 359 chain 496628 chrY 57227415 + 14952763 14958608 L1PA3long 6157 + 6 5861 3244 692 7 0 12 0 7 1106 0 1 4 3 2 496 1 0 44 0 4 206 0 3 109 1 0 496 0 1 78 6 5 25 0 1 552 0 1 93 1 2 691 1 2 258 0 1 963 chain 87977 chrY 57227415 + 14988303 14989551 HERV9-int 5642 + 4430 5640 20052 192 6 1 59 8 9 295 0 1 243 1 0 227 6 4 36 3 1 27 1 0 60 1 0 13 28 5 20 8 3 14 chain 192521 chrY 57227415 + 15013445 15015727 L1PA5 6144 + 765 3048 9995 834 0 1 287 1 0 653 0 1 507 chain 67842 chrY 57227415 + 15043523 15045693 L1PA4 6152 + 3448 6138 24486 568 0 1 31 1314 1832 194 0 1 63 chain 12740 chrY 57227415 + 15045717 15045984 THE1B 368 + 84 348 65541 7 14 0 78 1 0 5 59 66 77 1 2 13 0 4 12 chain 178946 chrY 57227415 + 15113827 15115907 L1P1 4361 + 705 2787 10634 323 1 0 403 2 0 575 0 1 373 0 4 403 chain 272489 chrY 57227415 + 15115915 15119729 L1PA6 6164 + 2038 6092 7642 109 0 1 74 18 19 62 2 0 21 0 2 140 2 0 260 2 1 27 12 118 85 0 1 4 9 8 160 0 3 5 4 1 44 6 8 16 0 3 30 6 10 59 0 3 28 0 82 60 0 36 593 1 3 213 2 1 313 8 2 21 4 6 8 0 1 71 0 1 48 0 1 200 11 12 79 7 7 289 10 12 94 8 7 37 3 4 38 0 1 250 1 2 104 4 6 4 1 0 29 1 2 5 1 0 33 1 0 77 chain 3652 chrY 57227415 + 15135081 15135122 L1PA7 6471 - 1153 1194 94011 41 chain 17812 chrY 57227415 + 15148884 15149095 L1PA3long 6157 + 3732 3944 58877 203 0 1 8 chain 7667 chrY 57227415 + 15149095 15149199 L1PA3long 6157 + 3945 4050 75714 25 1 2 78 chain 125940 chrY 57227415 + 15149199 15150659 L1PA3long 6157 + 4052 5513 14570 1030 1 2 294 1 0 102 0 1 32 chain 54878 chrY 57227415 + 15150659 15151292 L1PA3long 6157 + 5514 6147 27915 633 chain 25779 chrY 57227415 + 15158124 15165016 L1PA3long 6157 + 5211 6157 48054 351 5948 0 530 0 2 63 chain 393035 chrY 57227415 + 15255617 15270069 HERVE_a-int 7009 + 135 7007 5268 21 3 0 19 13 11 68 16 12 24 1 0 4 2 1 6 1 0 8 1 0 14 47 37 18 28 0 35 4 2 24 1 0 45 1 0 21 1 0 53 0 2 37 1 0 77 0 107 35 3 1 26 1 0 27 0 1 6 0 1 4 2 1 27 1 0 26 1 0 8 1 0 73 2 1 29 4 3 40 3 1 13 1 0 52 1 0 20 27 24 10 9 5 21 2 0 16 1 0 21 2 1 5 1 0 7 1 0 10 7 5 5 1 0 56 3 1 57 1 0 23 1 0 6 0 13 112 1 0 19 1 0 19 3 2 10 1 0 18 1 0 12 12 10 54 1 0 37 2 1 62 1 0 31 0 1 4 1 0 8 2 1 33 1 0 44 2 1 22 6 5 12 2 1 23 2 1 11 1 0 94 3 2 25 6 4 28 37 30 8 1 0 143 10 9 6 1 0 38 1 0 106 0 1 36 0 2 23 1 0 93 1 2 75 25 14 24 0 1 197 3 2 84 1 0 95 1 2 147 0 1 4 4 5 244 2 1 72 5 4 853 8390 0 822 9 0 114 1 0 13 3 872 79 1 0 44 1 0 16 14 14 11 1 0 15 1 0 5 2 0 7 1 0 39 1 0 19 5 4 43 1 0 3 1 0 27 8 6 55 2 1 8 4 0 27 3 0 53 2 0 28 2 0 30 11 8 13 1 0 25 2 0 33 9 7 10 34 26 22 3 1 5 1 0 11 chain 16193 chrY 57227415 + 15260583 15261205 LTR12C 1709 + 928 1534 60755 148 0 47 48 396 333 30 chain 9689 chrY 57227415 + 15267800 15268001 LTR12C 1709 + 703 831 71079 119 73 0 9 chain 395062 chrY 57227415 + 15369178 15374557 L1PA6 6164 + 455 6160 5235 108 6 8 216 0 17 53 0 1 162 14 15 51 0 3 195 0 1 122 0 2 102 7 5 109 0 1 101 1 0 60 14 15 48 0 1 122 0 1 4 1 0 38 5 6 72 0 1 67 0 1 49 0 2 110 2 1 199 16 24 356 0 1 113 30 181 101 1 0 243 1 0 70 0 60 177 9 8 97 52 0 13 0 3 41 0 3 4 0 1 152 1 0 146 0 61 276 0 1 42 1 0 4 0 1 84 0 2 15 0 2 6 2 0 67 0 1 136 0 13 22 0 1 6 1 4 75 0 1 225 15 19 420 0 37 321 chain 92705 chrY 57227415 + 15400939 15402263 HERVK14-int 1672 + 5 1334 19232 25 1 0 7 4 6 46 1 0 181 1 0 35 1 0 34 2 0 153 0 1 55 16 21 46 2 1 28 4 5 19 9 10 118 1 2 21 1 0 164 0 2 73 8 6 7 2 0 21 14 13 203 0 5 21 chain 488996 chrY 57227415 + 15406539 15412268 L1PA3long 6157 + 419 6157 3443 186 0 2 217 4 5 70 1 2 289 8 11 47 0 1 772 0 1 202 0 1 101 2 0 492 0 1 357 0 1 192 2 0 145 2 1 731 0 1 1651 1 0 103 2 0 13 0 1 123 4 7 12 chain 34893 chrY 57227415 + 15422979 15423444 LTR15 485 + 13 475 38097 62 1 0 86 14 15 274 3 0 25 chain 486645 chrY 57227415 + 15426065 15431796 L1PA3long 6157 + 10 5885 3498 100 0 1 37 1 0 4 1 4 122 1 0 35 1 0 4 0 1 395 1 2 22 1 2 42 7 135 79 0 3 47 0 1 535 0 3 437 0 1 675 13 12 147 0 1 319 0 1 1069 0 1 456 1 2 814 0 1 365 chain 21196 chrY 57227415 + 15434305 15434541 LTR12C 1709 + 1473 1709 54893 236 chain 32637 chrY 57227415 + 15437182 15437621 LTR15 485 + 0 421 39825 150 0 2 165 0 2 45 0 1 23 34 11 22 chain 28050 chrY 57227415 + 15439551 15439876 L1PA5 6144 + 5802 6128 44786 191 1 2 133 chain 4250 chrY 57227415 + 15447689 15447744 Tigger1 2417 + 29 88 89828 19 0 4 36 chain 43096 chrY 57227415 + 15455041 15455592 LTR22 571 + 0 554 32714 4 1 0 78 1 0 75 0 1 33 0 1 185 5 7 52 0 1 117 chain 306672 chrY 57227415 + 15504756 15508912 L1PA7 6471 + 2292 6456 6683 242 9 20 87 29 1 234 0 3 142 9 10 20 3 0 256 4 23 62 1 2 146 6 10 62 8 9 115 1 0 4 5 1 260 3 0 7 0 1 24 0 4 60 1 2 159 5 6 304 4 5 966 0 2 63 8 7 10 1 0 103 0 1 285 6 5 79 0 1 22 5 7 234 4 0 98 chain 277722 chrY 57227415 + 15512720 15516414 HERVH-int 3825 + 0 3824 7498 327 7 6 197 1 0 11 1 0 4 0 1 24 1 0 10 1 0 9 4 0 14 7 1 11 4 3 13 3 0 7 16 14 4 1 0 42 2 1 18 66 1 5 0 1 5 1 0 50 0 1 4 2 0 442 15 0 204 9 0 22 4 6 12 1 0 92 3 1 5 0 2 113 6 33 290 0 4 76 7 8 207 0 1 120 11 5 597 1 0 46 9 11 39 0 210 268 0 2 72 1 2 150 chain 19368 chrY 57227415 + 15517672 15518073 LTR7 482 + 0 482 57164 20 58 147 13 51 0 44 8 40 51 1 12 155 chain 7816 chrY 57227415 + 15520187 15520282 MLT2B2 565 + 21 116 75325 95 chain 55197 chrY 57227415 + 15524316 15524983 L1PA4 6152 + 3705 4379 27809 184 4 5 46 0 1 261 0 1 145 0 4 27 chain 2925 chrY 57227415 + 15600344 15600378 ORSL 269 + 69 103 100623 34 chain 496847 chrY 57227415 + 15610903 15617033 L1PA4 6152 + 0 6143 3239 125 6 18 12 44 45 275 0 4 228 2 3 344 0 1 231 2 0 148 0 2 45 0 1 328 0 1 198 10 9 405 2 0 4 3 0 94 0 3 880 24 15 170 16 17 76 4 0 785 1 0 409 0 4 661 0 1 314 0 1 229 25 27 30 chain 90363 chrY 57227415 + 15620569 15621673 L1PA5 6144 + 5013 6130 19615 90 0 15 265 1 0 84 0 1 57 19 17 588 chain 145300 chrY 57227415 + 15621758 15623802 L1PA8 5853 + 3785 5841 12667 12 2 0 5 5 7 56 0 5 100 0 1 84 0 6 138 17 11 5 0 3 58 0 1 295 2 0 127 0 9 124 1 2 65 21 22 83 4 3 8 1 0 8 9 10 449 0 2 5 2 0 75 1 0 44 2 0 65 7 6 64 1 0 17 6 5 76 chain 6689 chrY 57227415 + 15667515 15667597 LTR12_ 688 + 458 540 78676 82 chain 90955 chrY 57227415 + 15700714 15701816 L1PA5 6144 + 5013 6138 19513 281 1 0 147 10 33 507 9 10 147 chain 472719 chrY 57227415 + 15712992 15718739 L1PA4 6152 + 1 5737 3794 155 16 17 261 4 0 126 14 13 682 1 2 157 21 3 181 0 1 426 0 1 538 0 7 602 1 0 29 6 1 1249 0 3 129 0 1 6 0 1 42 0 1 236 0 1 865 chain 3417 chrY 57227415 + 15748971 15749044 LTR12F 595 + 112 177 95927 25 20 12 28 chain 4377 chrY 57227415 + 15763411 15763467 MER58A 224 + 152 207 89017 27 1 0 28 chain 131250 chrY 57227415 + 15842684 15844174 L1PA3long 6157 + 3581 5071 13896 666 0 1 787 1 0 36 chain 529798 chrY 57227415 + 15885446 15891462 L1PA2 6032 + 8 6032 1836 67 0 5 176 1 0 162 0 1 330 0 1 568 0 1 783 2 0 467 1 0 989 0 1 425 0 1 179 0 1 348 1 0 195 0 1 1067 2 1 67 0 1 27 6 0 10 1 8 142 chain 37691 chrY 57227415 + 15926405 15926949 LTR22 571 + 0 535 36279 82 1 0 70 0 1 283 54 43 43 0 2 11 chain 207794 chrY 57227415 + 15928837 15931210 L1PA3long 6157 + 3776 6157 9429 78 0 5 634 2 1 149 0 3 1193 0 1 317 chain 71882 chrY 57227415 + 15988804 15989712 L1PA7 6471 + 4696 5613 23573 868 0 7 22 6 8 12 chain 511730 chrY 57227415 + 16026055 16032062 L1PA3long 6157 + 4 6156 2677 122 0 14 9 45 32 595 0 128 536 1 0 19 19 25 380 1 0 30 0 1 175 0 1 47 0 1 1575 0 2 571 0 3 230 1 5 200 2 1 958 0 1 335 2 0 6 0 2 148 chain 63442 chrY 57227415 + 16046003 16046847 L1PA7 6471 + 4122 4970 25536 65 3 4 361 0 1 4 1 0 96 4 0 244 5 13 41 1 0 19 chain 431617 chrY 57227415 + 16071770 16077457 HERV9-int 5642 + 11 5620 4726 68 4 5 380 2 1 17 1 2 101 0 1 210 2 1 139 7 8 148 79 0 14 3 0 145 6 5 1242 0 1 530 0 1 158 0 1 835 0 1 149 1 2 346 1 26 10 0 1 369 5 6 206 1 2 154 0 2 149 16 14 32 25 20 12 1 0 60 1 0 9 32 9 17 chain 7227 chrY 57227415 + 16082798 16083032 LTR19-int 1103 + 86 194 76869 13 107 0 25 17 0 7 1 0 18 1 0 45 chain 24124 chrY 57227415 + 16178775 16179077 L1PA3long 6157 + 5019 5309 50616 164 13 1 125 chain 76596 chrY 57227415 + 16179079 16179928 L1PA3long 6157 + 5309 6157 22416 501 1 0 347 chain 40796 chrY 57227415 + 16180721 16181286 LTR10C 591 + 0 573 34098 47 0 4 84 1 5 352 2 0 6 32 34 41 chain 3511 chrY 57227415 + 16189615 16189652 LTR49 580 + 94 131 95166 37 chain 12307 chrY 57227415 + 16206052 16206211 LTR10D 510 + 348 505 66280 71 2 0 86 chain 6140 chrY 57227415 + 16273305 16273376 HERV9-int 5642 + 4645 4716 80568 71 chain 40525 chrY 57227415 + 16273377 16273899 HERV9-int 5642 + 4716 5236 34293 354 0 1 104 3 0 61 chain 16413 chrY 57227415 + 16273900 16274117 HERV9-int 5642 + 5236 5453 60502 217 chain 9064 chrY 57227415 + 16274127 16274262 HERV9-int 5642 + 5461 5592 72416 38 2 0 26 1 0 60 1 0 7 chain 31375 chrY 57227415 + 16291241 16291594 L1PA3long 6157 + 4972 5325 40831 353 chain 53783 chrY 57227415 + 16296750 16297367 L1PA4 6152 + 5534 6151 28290 49 1 0 517 0 1 50 chain 121043 chrY 57227415 + 16297375 16299190 L1P3 4156 + 2284 4134 15342 130 0 1 181 0 1 10 1 0 21 0 2 7 1 0 246 0 4 210 0 4 129 0 4 29 1 2 35 41 38 27 9 8 44 6 12 13 4 0 5 0 4 29 9 10 4 1 0 115 1 0 4 0 1 15 22 1 216 12 0 7 32 44 88 3 45 77 2 0 7 2 1 19 chain 57114 chrY 57227415 + 16324330 16325181 LTR12 884 + 0 884 27226 24 1 0 317 91 1 36 6 28 219 2 105 71 1 0 83 chain 25594 chrY 57227415 + 16326765 16327221 LTR19B 566 + 0 566 48331 111 0 4 8 1 5 33 0 1 4 4 3 156 4 2 15 10 111 14 27 32 12 27 25 30 chain 500592 chrY 57227415 + 16361340 16367197 L1PA4 6152 + 0 5868 3106 128 0 14 438 1 0 92 1 2 161 18 1 363 7 8 326 2 1 308 0 15 596 2 0 238 1 0 480 1 0 994 0 2 172 0 1 1528 chain 35152 chrY 57227415 + 16371455 16371930 LTR15 485 + 17 485 37926 46 21 8 4 0 1 178 0 1 20 0 4 206 chain 19813 chrY 57227415 + 16409729 16410046 Tigger2a 444 + 54 348 56660 43 26 11 160 20 12 68 chain 46130 chrY 57227415 + 16412330 16412930 LTR30 714 + 22 706 30997 390 0 85 155 9 8 46 chain 27969 chrY 57227415 + 16413541 16414548 HERV30-int 1034 + 137 786 44921 10 24 0 13 6 0 82 61 31 6 2 0 33 8 3 39 12 0 75 2 1 21 1 0 53 1 2 12 30 15 29 34 0 19 243 105 22 66 27 24 52 0 27 chain 517423 chrY 57227415 + 16427017 16433089 L1PA3long 6157 + 6 6157 2405 653 0 7 279 0 1 28 0 2 99 0 1 28 0 2 361 0 1 167 0 1 161 0 70 236 0 1 549 14 0 1450 5 7 234 10 14 311 1 2 629 1 0 768 0 1 88 chain 91748 chrY 57227415 + 16465175 16466384 L1PA7 6471 + 5255 6467 19377 42 0 1 323 1 0 178 6 9 148 0 2 8 1 0 4 4 5 459 0 2 25 4 0 6 chain 76093 chrY 57227415 + 16467865 16468729 L1P1 4361 + 2993 3857 22544 172 1 0 517 0 1 174 chain 46797 chrY 57227415 + 16492541 16493682 LTR10C 591 + 0 591 30729 209 552 0 164 0 2 216 chain 65706 chrY 57227415 + 16506524 16507273 L1PA3long 6157 + 5408 6157 25031 749 chain 21689 chrY 57227415 + 16518522 16518786 MER9a3 513 + 0 266 54239 13 0 1 139 0 1 112 chain 8075 chrY 57227415 + 16575552 16575640 L1PA3long 6157 + 5919 6007 74686 88 chain 12637 chrY 57227415 + 16575640 16575788 L1PA3long 6157 + 6008 6156 65738 148 chain 51853 chrY 57227415 + 16595205 16596098 LTR12 884 + 4 873 28921 21 1 0 52 26 1 81 0 4 108 16 105 258 160 69 170 chain 5622 chrY 57227415 + 16615737 16615809 LTR66 600 + 338 411 82699 55 0 1 17 chain 85037 chrY 57227415 + 16622733 16623711 L1PA5 6144 + 4098 5076 20613 978 chain 6454 chrY 57227415 + 16659336 16659408 L1PBa1 4058 + 85 157 79501 72 chain 493244 chrY 57227415 + 16683210 16689190 L1PA5 6144 + 0 5964 3339 124 1 0 578 2 1 340 3 4 204 1 0 46 0 1 74 0 1 60 2 0 104 0 1 32 0 3 343 7 12 7 1 0 378 3 0 83 0 3 101 0 2 1482 0 3 451 1 2 18 35 5 16 6 7 689 0 1 134 1 0 381 0 1 272 chain 140730 chrY 57227415 + 16705815 16707724 L1PA7 6471 + 4572 6468 13042 231 2 0 5 0 2 164 16 7 4 0 1 74 8 0 7 0 8 90 0 1 93 13 3 56 0 8 294 1 0 219 0 1 169 19 15 114 11 12 162 4 5 142 2 0 9 chain 505277 chrY 57227415 + 16762056 16768215 L1PA5 6144 + 4 6132 2955 130 9 0 856 0 1 681 6 4 341 0 1 4 1 0 78 0 3 4 0 1 200 1 0 120 7 11 724 11 7 114 0 1 69 11 5 235 3 0 143 33 17 874 2 0 1153 2 0 31 0 1 33 4 5 59 0 2 220 chain 10253 chrY 57227415 + 16799165 16799282 MER4A1 472 + 30 147 69893 117 chain 25325 chrY 57227415 + 16847094 16847359 AluYa8 305 + 40 305 48750 265 chain 192383 chrY 57227415 + 16857715 16860292 L1PA3long 6157 + 3897 6147 10000 428 325 0 858 4 1 28 0 2 86 1 0 84 1 0 214 0 1 548 chain 70414 chrY 57227415 + 16863461 16864285 L1PA4 6152 + 4691 5521 23889 458 0 5 166 0 1 200 chain 3126 chrY 57227415 + 16872699 16872831 MER58A 224 + 49 183 98573 29 84 86 19 chain 290516 chrY 57227415 + 16875110 16878795 HERVK9-int 4720 + 474 4692 7112 142 0 457 514 0 2 516 0 2 5 1 0 733 0 1 251 0 1 90 1 4 121 17 20 268 17 27 229 0 48 27 1 3 105 7 6 565 0 6 75 chain 43441 chrY 57227415 + 16878823 16879335 MER9a1 513 + 0 513 32481 157 0 1 355 chain 510637 chrY 57227415 + 16901805 16907766 L1PA3long 6157 + 0 6156 2740 38 7 38 77 1 2 612 9 137 334 0 1 713 1 0 155 0 3 220 1 0 366 0 1 621 5 4 427 0 1 17 0 1 205 0 31 2152 chain 32358 chrY 57227415 + 16907795 16908167 L1PA3long 6157 + 5783 6155 40073 372 chain 480401 chrY 57227415 + 16912864 16918205 L1PA2 6032 + 675 6032 3626 838 0 9 1536 0 5 328 0 1 1767 0 1 706 5 0 7 0 5 154 chain 523406 chrY 57227415 + 16985048 16991070 L1PA3long 6157 + 4 6157 2119 148 11 12 235 0 2 313 1 2 60 0 128 1411 4 0 382 1 0 1092 2 0 1643 0 1 464 0 1 216 0 1 27 0 3 12 chain 3225 chrY 57227415 + 17009110 17009145 MER68B 564 + 224 259 97708 35 chain 4408 chrY 57227415 + 17041995 17042044 L1P5 443 + 380 429 88854 49 chain 114642 chrY 57227415 + 17042924 17044316 LTR12C 1709 + 0 1709 16445 266 0 1 90 12 6 214 2 1 214 1 319 113 0 4 73 0 1 407 chain 5451 chrY 57227415 + 17047708 17047855 MER4A1 472 + 169 336 83459 17 2 0 8 16 18 11 34 54 59 chain 32070 chrY 57227415 + 17099693 17100046 L1PA2 6032 + 3762 4116 40291 55 1 2 297 chain 6671 chrY 57227415 + 17102615 17102732 L1MB3 1562 + 1139 1264 78728 29 25 33 63 chain 29136 chrY 57227415 + 17181614 17181919 AluYb8 318 + 12 317 43143 305 chain 38711 chrY 57227415 + 17200618 17201052 L1PA4 6152 + 5717 6151 35553 434 chain 429363 chrY 57227415 + 17212767 17217917 L1PA4 6152 + 4 5177 4759 142 7 21 792 0 1 74 2 0 207 1 0 456 0 1 20 4 5 540 0 2 1000 0 2 14 5 6 228 0 1 334 8 2 499 0 4 366 0 4 393 0 1 58 chain 13219 chrY 57227415 + 17263543 17263686 L1PA3long 6157 + 5168 5311 64747 143 chain 68850 chrY 57227415 + 17263686 17264467 L1PA3long 6157 + 5312 6093 24248 137 1 0 558 5 6 80 chain 5419 chrY 57227415 + 17264467 17264530 L1PA3long 6157 + 6094 6157 83607 63 chain 18546 chrY 57227415 + 17277973 17278365 L1PB1 5432 + 5064 5423 58052 36 6 7 7 3 0 24 1 0 7 2 1 11 2 0 3 2 0 8 2 0 52 2 1 16 1 0 44 1 0 20 19 7 19 7 4 15 2 0 24 1 0 14 9 8 12 1 0 19 chain 41951 chrY 57227415 + 17287768 17288353 PABL_B 668 + 53 648 33388 4 0 1 39 20 29 155 1 0 69 1 0 86 1 2 87 1 2 121 chain 472039 chrY 57227415 + 17311632 17317311 L1PA4 6152 + 0 5736 3811 452 25 19 109 1 0 225 0 1 136 0 4 94 1 0 44 0 1 151 1 0 212 0 1 863 2 1 979 0 1 61 4 1 1280 1 6 666 1 58 371 chain 135382 chrY 57227415 + 17322561 17324099 L1PA3long 6157 + 4618 6157 13505 1389 0 1 149 chain 22442 chrY 57227415 + 17365396 17365645 L1PA3long 6157 + 5908 6157 53211 249 chain 122421 chrY 57227415 + 17376183 17377483 L1HS 6032 + 3637 4937 15121 1300 chain 11365 chrY 57227415 + 17404712 17404852 LTR66 600 + 0 140 67978 140 chain 71613 chrY 57227415 + 17404918 17405894 LTR13 1007 + 27 1006 23635 322 1 2 30 4 5 55 1 0 242 6 0 8 6 14 110 2 3 137 22 21 30 chain 29100 chrY 57227415 + 17435291 17435601 AluYa5 310 + 0 309 43188 132 1 0 177 chain 282310 chrY 57227415 + 17447547 17450816 L1PA4 6152 + 1821 5396 7367 66 1 0 1297 0 1 1298 0 301 369 0 5 238 chain 9326 chrY 57227415 + 17451289 17451625 L1PB1 5432 + 5121 5430 71861 13 1 0 12 1 0 12 7 3 6 2 0 13 6 5 35 2 1 16 1 0 18 106 95 20 1 0 21 10 9 4 1 0 18 2 0 8 chain 87422 chrY 57227415 + 17485788 17487056 L1PB1 5432 + 2526 3818 20151 65 2 1 180 8 9 53 6 0 11 1 0 63 0 1 310 21 67 187 21 25 230 21 0 8 0 1 81 chain 18357 chrY 57227415 + 17497689 17497940 L1PA7 6471 + 6213 6464 58291 7 0 7 33 4 0 199 3 0 5 chain 53892 chrY 57227415 + 17540960 17541579 L1PA2 6032 + 5434 6032 28258 446 0 1 142 22 0 9 chain 143137 chrY 57227415 + 17590652 17592257 L1PA3long 6157 + 4304 5908 12848 1514 1 0 90 chain 29588 chrY 57227415 + 17609728 17610071 HERV-Fc1_LTR1 345 + 0 345 42498 279 0 2 64 chain 410118 chrY 57227415 + 17610071 17614646 HERV-Fc1-int 4575 + 0 4575 5022 36 1 0 2116 6 7 293 0 1 582 1 0 222 1 2 992 3 1 119 0 1 203 chain 30086 chrY 57227415 + 17614646 17614986 HERV-Fc1_LTR1 345 + 0 339 41969 280 1 0 59 chain 67176 chrY 57227415 + 17685059 17686114 HERVK11-int 2540 + 1213 2234 24653 12 2 1 25 13 3 27 26 9 410 36 31 104 1 0 66 6 7 53 4 5 52 13 12 73 21 20 111 chain 47583 chrY 57227415 + 17691750 17692276 L1PA2 6032 + 5298 5824 30448 526 chain 511400 chrY 57227415 + 17708362 17714256 L1PA3long 6157 + 6 5912 2692 1964 7 8 80 1 2 636 0 1 31 0 4 1134 0 1 628 0 2 410 1 2 28 1 2 973 chain 47723 chrY 57227415 + 17744819 17745404 LTR14C 587 + 2 587 30387 585 chain 215229 chrY 57227415 + 17749002 17751914 L1PA6 6164 + 3226 6157 9167 63 4 0 11 0 1 324 6 5 292 14 15 391 1 0 41 0 12 110 1 2 99 17 17 34 1 0 672 3 10 173 10 20 349 8 9 131 17 10 140 chain 103553 chrY 57227415 + 17865405 17866509 L1HS 6032 + 4928 6032 17870 1104 chain 341966 chrY 57227415 + 17889620 17893903 L1P1 4361 + 59 4341 6021 55 0 1 16 0 1 111 0 10 633 0 1 8 0 1 343 0 1 311 0 2 1014 1 12 22 0 1 169 6 8 41 0 1 4 2 1 107 26 0 750 9 6 462 1 0 154 1 0 23 2 1 12 chain 517424 chrY 57227415 + 17894555 17900779 L1PA4 6152 + 2 6143 2404 369 24 1 204 1 0 257 41 0 187 3 0 14 2 0 209 0 1 310 24 0 660 0 1 104 1 0 507 0 1 4 2 1 1805 0 3 214 0 7 1282 chain 493410 chrY 57227415 + 17944185 17950194 L1PA4 6152 + 6 6137 3333 194 1 0 4 0 1 148 7 8 860 16 15 307 0 24 65 1 0 106 0 1 46 6 7 585 4 37 847 1 3 234 6 11 519 0 1 290 1 0 307 3 16 112 0 3 5 17 57 979 0 1 338 chain 26443 chrY 57227415 + 18040597 18040877 L1HS 6032 + 4600 4880 47065 280 chain 216440 chrY 57227415 + 18098165 18100835 L1PA4 6152 + 13 5301 9136 443 12 6 54 3 0 64 1 0 726 0 1 190 19 2629 225 0 8 139 0 4 110 0 2 21 1 0 238 0 4 424 chain 73827 chrY 57227415 + 18100836 18101692 L1PA4 6152 + 5301 6152 23137 845 5 0 6 chain 37172 chrY 57227415 + 18152569 18153101 LTR14C 587 + 0 538 36633 33 9 8 4 0 1 46 0 1 26 23 25 178 7 10 206 chain 402720 chrY 57227415 + 18209808 18215543 L1PA4 6152 + 3 5037 5122 617 13 15 517 2 0 6 1 0 4 0 3 114 0 1 115 0 9 65 0 1 565 0 1 46 8 20 219 0 1 41 9 9 185 0 1 806 9 8 142 1 0 36 0 1 195 0 1 206 731 0 411 1 2 414 0 1 256 chain 17446 chrY 57227415 + 18214263 18214461 L1PA2 6032 + 5834 6028 59299 187 4 0 7 chain 26721 chrY 57227415 + 18288894 18290426 L1PA8 5853 + 4699 5846 46656 128 2 4 151 9 13 11 1152 761 79 chain 75427 chrY 57227415 + 18315384 18316237 L1PA3long 6157 + 3431 4284 22738 853 chain 58655 chrY 57227415 + 18356413 18357192 L1PB1 5432 + 3877 4671 26770 98 0 10 220 1 3 146 0 1 6 1 0 16 9 11 241 0 1 41 chain 89863 chrY 57227415 + 18365052 18366041 L1PA2 6032 + 4439 5428 19705 989 chain 34975 chrY 57227415 + 18645040 18645482 LTR7 482 + 0 473 38032 30 0 1 50 4 0 180 0 31 20 0 1 103 15 17 40 chain 45988 chrY 57227415 + 18671787 18672374 LTR14C 587 + 0 587 31067 376 1 2 96 1 0 113 chain 5984 chrY 57227415 + 18679982 18680057 MER3 215 + 62 137 81147 75 chain 42822 chrY 57227415 + 18780522 18781025 L1PA3long 6157 + 5665 6157 32876 283 8 6 55 9 0 148 chain 12702 chrY 57227415 + 18880604 18880758 LTR12C 1709 + 932 1086 65614 154 chain 525142 chrY 57227415 + 18893899 18899929 L1PA3long 6157 + 0 6156 2040 152 0 1 628 0 128 253 0 3 246 0 9 905 0 1 637 3 0 299 2 1 506 0 1 901 4 1 29 11 4 14 0 1 1184 2 1 148 5 2 101 chain 4025 chrY 57227415 + 18904496 18904544 MLT1A 405 + 314 362 91275 48 chain 69582 chrY 57227415 + 18915068 18915997 L1PA7 6471 + 4902 5841 24100 53 3 1 248 0 1 211 0 6 138 12 13 40 3 0 6 5 12 210 chain 43889 chrY 57227415 + 18926642 18927154 MER9a1 513 + 0 513 32198 38 0 1 4 1 0 261 0 1 208 chain 26984 chrY 57227415 + 18930683 18931017 L1PA6 6164 + 5827 6162 46292 187 5 6 142 chain 293879 chrY 57227415 + 18956847 18993523 L1PA7 6471 + 1161 6456 7017 78 4 6 23 3 4 108 16 8 126 0 13 34 3 2 205 9 6 376 5 6 12 1 2 49 0 1 65 1 0 68 0 3 16 194 8 207 19 12 15 973 426 31 0 1 130 15 19 145 0 5 34 1 2 73 5 6 8 1 0 8 6 5 202 47 50 65 18 19 26 7 7 46 2 3 172 0 1 25 0 13 421 318 0 30 2 3 280 1 0 35 23 23 20 6 1 78 0 6 119 27808 0 351 1 0 111 1 4 121 0 1 59 2 6 290 2579 19 23 1 0 319 chain 12204 chrY 57227415 + 18958083 18958231 L1PA7 6471 + 1774 1922 66467 148 chain 45144 chrY 57227415 + 18958484 18959456 MER11B 1079 + 0 978 31495 225 0 5 129 0 1 65 48 46 28 82 86 22 20 23 32 103 92 16 53 56 26 18 19 13 0 1 33 0 1 59 chain 43607 chrY 57227415 + 18961867 18962720 L1PA7 6471 + 5163 5736 32377 212 281 1 85 0 1 82 1 0 4 1 2 68 2 0 92 0 1 25 chain 68489 chrY 57227415 + 19009525 19010291 L1PA2 6032 + 5271 6032 24338 390 0 1 198 0 1 23 8 1 147 chain 331732 chrY 57227415 + 19034631 19038436 L1HS 6032 + 5 3815 6187 242 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6 7 107 1 0 133 1 2 218 6 7 396 chain 46716 chrY 57227415 + 19167194 19167781 LTR14C 587 + 0 587 30765 103 2 0 10 0 1 37 0 1 435 chain 459110 chrY 57227415 + 19172494 19178283 L1PA5 6144 + 3 5774 4153 285 19 8 702 0 1 5 2 1 39 0 1 37 4 9 139 7 0 487 0 1 582 1 0 4 0 1 8 0 1 314 16 1 566 3 1 471 11 12 362 0 1 240 5 6 43 10 14 289 0 1 92 1 0 565 2 3 249 0 1 229 chain 30641 chrY 57227415 + 19248095 19248522 L1PA7 6471 + 6007 6469 41434 200 19 20 48 15 49 145 chain 452102 chrY 57227415 + 19254452 19288953 L1PA4 6152 + 1 6151 4335 123 22 8 10 28 42 64 0 1 116 6 16 649 1 0 232 0 3 150 2 7 192 0 9 122 0 1 567 2 0 39 6 4 504 0 12 298 0 1 199 0 1 676 1 0 422 0 2 163 28395 1 665 0 1 68 0 1 14 0 1 580 0 1 185 chain 29860 chrY 57227415 + 19259046 19259412 L1PA4 6152 + 4635 5028 42172 287 2 29 77 chain 32113 chrY 57227415 + 19287065 19287441 L1PA4 6152 + 4258 4634 40262 376 chain 214342 chrY 57227415 + 19294863 19297770 HERVK9-int 4720 + 37 4720 9194 12 8 5 4 1 0 65 2 1 34 17 16 210 15 14 33 6 7 100 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53293 133 1 14 7 12 0 6 0 1 143 chain 4847 chrY 57227415 + 21572379 21572587 HERVE_a-int 7009 + 135 322 86450 21 12 9 19 1 0 6 3 0 30 74 64 4 1 0 6 1 0 7 4 3 6 1 0 12 chain 19709 chrY 57227415 + 21580052 21580304 LTR14C 587 + 0 254 56774 64 0 1 56 3 4 129 chain 45516 chrY 57227415 + 21615766 21616266 L1PA2 6032 + 5532 6032 31299 500 chain 37407 chrY 57227415 + 21713008 21713478 MER9a2 513 + 0 472 36471 416 0 2 54 chain 280685 chrY 57227415 + 21714866 21718567 HERVK9-int 4720 + 58 4717 7405 66 1 0 9 1 0 17 11 10 352 13 14 7 1 0 449 1 2 47 23 24 310 2 0 131 0 924 40 6 5 4 0 1 251 0 1 111 1 3 32 6 7 403 1 0 190 12 14 546 33 34 338 0 31 286 chain 43474 chrY 57227415 + 21836852 21837475 LTR12_ 688 + 15 680 32467 62 2 43 47 11 11 90 30 32 213 5 4 163 chain 13347 chrY 57227415 + 21958200 21958347 L1PA2 6032 + 5882 6029 64548 147 chain 38297 chrY 57227415 + 21992112 21992523 L1PA2 6032 + 5244 5655 35843 411 chain 494136 chrY 57227415 + 22040943 22047073 L1PA5 6144 + 14 6137 3306 1419 1 0 468 2 1 461 0 1 518 1 0 265 11 12 513 0 1 260 0 1 1122 0 1 46 0 1 20 0 2 36 43 29 12 8 7 130 1 0 217 0 1 119 0 2 7 13 11 40 1 0 148 1 0 101 6 11 140 chain 65287 chrY 57227415 + 22069295 22070020 L1PA3long 6157 + 5427 6152 25109 725 chain 47354 chrY 57227415 + 22085067 22085653 LTR14C 587 + 0 587 30522 397 0 1 189 chain 24338 chrY 57227415 + 22213321 22213624 AluY 311 + 7 304 50266 119 6 0 178 chain 58050 chrY 57227415 + 22288842 22289462 L1PA2 6032 + 5408 6028 26946 620 chain 81437 chrY 57227415 + 22392468 22393428 L1PA4 6152 + 4289 5251 21349 261 6 13 173 5 0 515 chain 74744 chrY 57227415 + 22475174 22476068 MER11D 897 + 0 897 22905 48 1 2 129 0 4 265 0 1 122 2 0 20 2 1 305 chain 9419 chrY 57227415 + 22547843 22547964 LTR22 571 + 0 121 71657 121 chain 32210 chrY 57227415 + 22594282 22594662 L1PA2 6032 + 5652 6032 40178 214 5 0 7 5 10 149 chain 13948 chrY 57227415 + 22596780 22597729 LTR15 485 + 0 475 63673 65 763 289 121 chain 206649 chrY 57227415 + 22599127 22601551 L1PA4 6152 + 3083 5518 9479 87 0 1 141 0 1 668 1 2 168 0 3 7 0 1 112 1 4 1196 0 1 43 chain 31866 chrY 57227415 + 22616889 22617330 MER9a2 513 + 0 443 40443 12 1 2 32 0 1 198 13 31 7 18 0 160 chain 51305 chrY 57227415 + 22618012 22618758 HERVK9-int 4720 + 6 729 29127 17 55 39 62 1 0 9 1 0 20 31 26 550 chain 29469 chrY 57227415 + 22634315 22634769 LTR7B 505 + 0 495 42642 108 0 10 57 15 77 28 29 0 85 1 0 66 24 23 41 chain 22725 chrY 57227415 + 22673020 22673333 L1PA6 6164 + 5849 6160 52796 142 11 12 151 3 0 6 chain 128925 chrY 57227415 + 22708327 22709879 LTR12C 1709 + 0 1709 14159 101 3 0 5 0 3 200 0 1 4 1 0 385 0 159 253 1 0 6 2 0 107 0 4 53 4 1 427 chain 43224 chrY 57227415 + 22711842 22712403 LTR22 571 + 0 564 32630 297 0 1 172 9 11 83 chain 2763 chrY 57227415 + 22723763 22723797 THE1A 353 + 319 353 101888 34 chain 35176 chrY 57227415 + 22732234 22732705 LTR15 485 + 0 475 37909 126 1 0 24 0 2 127 1 5 44 1 0 69 1 0 57 5 6 15 chain 141977 chrY 57227415 + 22778727 22780347 L1PA3long 6157 + 3807 5426 12938 1233 1 0 386 chain 10553 chrY 57227415 + 22785820 22786306 LTR12D 1347 + 589 1081 69317 79 78 0 26 45 47 27 193 276 4 1 0 33 chain 2918 chrY 57227415 + 22785944 22785977 LTR12D 1347 + 444 477 85027 33 chain 428576 chrY 57227415 + 22786661 22792407 HERV9-int 5642 + 4 5642 4770 87 0 1 62 1 2 235 0 1 112 1 2 93 12 12 177 5 3 5 0 1 291 80 0 19 16 12 146 0 1 314 9 10 250 1 3 992 0 2 577 16 15 582 9 11 112 0 3 5 6 3 781 7 6 78 6 10 191 28 27 215 10 8 36 8 6 21 2 1 60 1 0 13 14 10 10 33 7 17 chain 46126 chrY 57227415 + 22795036 22795665 LTR12D 1347 + 460 1347 30999 76 1 32 119 7 24 163 0 1 4 2 1 34 23 233 200 chain 6731 chrY 57227415 + 22850788 22850866 L1PA4 6152 + 2525 2603 78537 78 chain 532786 chrY 57227415 + 22854945 22860960 L1PA2 6032 + 3 6028 1720 68 1 2 190 0 1 4 1 0 844 0 1 427 0 6 1023 1 0 535 0 1 404 0 1 4 3 2 306 0 1 983 0 1 1221 chain 398116 chrY 57227415 + 22871659 22876372 L1PA4 6152 + 1228 5968 5182 8 0 1 498 0 2 35 4 0 105 0 16 413 7 6 859 1 0 121 1 0 390 0 1 557 0 1 394 1 0 112 0 15 300 0 1 51 7 7 162 1 0 27 3 2 656 chain 488361 chrY 57227415 + 22919809 22925908 L1PA5 6144 + 0 6123 3460 8 0 1 33 25 26 666 16 0 169 1 7 256 0 8 45 1 0 287 0 18 646 0 1 134 14 13 221 2 0 131 1 0 4 1 3 343 6 8 204 1 0 258 33 34 151 0 1 774 2 5 219 0 1 604 9 10 106 0 1 495 2 1 231 chain 2829 chrY 57227415 + 22936940 22936971 LTR12 884 + 294 325 101404 31 chain 3620 chrY 57227415 + 22936976 22937052 LTR12 884 + 157 208 94271 36 25 0 15 chain 35787 chrY 57227415 + 22947146 22947546 L1PA3long 6157 + 5752 6152 37539 400 chain 35193 chrY 57227415 + 23103109 23103645 MLT2A2 560 + 0 545 37902 299 15 14 83 55 65 84 chain 5423 chrY 57227415 + 23122056 23122132 L1MA4 2864 + 92 164 83591 7 4 0 65 chain 546118 chrY 57227415 + 23144667 23150705 L1PA2 6032 + 0 6031 964 229 0 1 27 1 0 458 1 0 399 4 0 1455 1 0 2609 0 1 840 2 0 12 chain 3459 chrY 57227415 + 23308848 23308906 L1PB3 3668 + 3508 3564 95550 20 8 6 30 chain 6342 chrY 57227415 + 23335204 23335425 LTR12C 1709 + 1033 1140 79860 24 41 0 49 86 13 21 chain 32634 chrY 57227415 + 23342609 23343196 LTR12C 1709 + 650 1076 39829 53 41 0 134 1 0 155 119 0 84 chain 3473 chrY 57227415 + 23342662 23342703 LTR12C 1709 + 1022 1063 90457 41 chain 572 chrY 57227415 + 23343235 23343276 LTR12C 1709 + 677 718 86783 41 chain 13347 chrY 57227415 + 23568008 23568155 L1PA2 6032 + 5882 6029 64549 147 chain 38166 chrY 57227415 + 23601398 23601809 L1PA2 6032 + 5244 5655 35934 411 chain 114227 chrY 57227415 + 23606809 23609355 L1PA5 6144 + 4154 5508 16517 329 1190 0 811 1 0 68 16 15 131 chain 494396 chrY 57227415 + 23650233 23656363 L1PA5 6144 + 14 6137 3299 1419 1 0 468 2 1 461 0 1 518 1 0 265 11 12 513 0 1 260 0 1 1122 0 1 46 0 1 20 0 2 36 43 29 12 8 7 130 1 0 217 0 1 119 0 2 7 13 11 40 1 0 148 1 0 101 6 11 140 chain 65165 chrY 57227415 + 23678979 23679704 L1PA3long 6157 + 5427 6152 25141 725 chain 47140 chrY 57227415 + 23694755 23695341 LTR14C 587 + 0 587 30596 397 0 1 189 chain 523489 chrY 57227415 + 23704611 23710597 L1PA3long 6157 + 10 6152 2112 771 0 128 140 0 2 1646 1 0 486 0 1 1096 0 26 641 1 0 4 0 1 1047 4 5 136 1 0 12 chain 43569 chrY 57227415 + 23720451 23721087 HERVK11-int 2540 + 1598 2234 32403 112 23 20 23 0 1 94 1 0 94 0 1 75 13 15 6 3 0 65 5 7 105 0 1 17 chain 86364 chrY 57227415 + 23721961 23723044 MER11C 1089 + 0 1089 20347 86 5 7 220 0 4 273 8 9 486 1 0 4 chain 19679 chrY 57227415 + 23732412 23732644 L1PA3long 6157 + 5340 5572 56812 232 chain 50406 chrY 57227415 + 23732644 23733228 L1PA3long 6157 + 5573 6157 29412 584 chain 28150 chrY 57227415 + 23753362 23753663 AluYa5 310 + 0 300 44635 132 1 0 168 chain 417403 chrY 57227415 + 23756281 23761500 L1PA4 6152 + 0 5177 4917 455 2 3 122 0 3 5 6 3 588 0 9 35 15 14 77 5 6 95 21 19 23 2 1 504 0 1 238 0 2 2461 1 2 203 52 0 160 1 0 73 0 15 8 15 0 52 chain 129075 chrY 57227415 + 23910321 23911776 L1PA2 6032 + 4573 6030 14137 1293 1 6 6 5 0 86 0 2 64 chain 139540 chrY 57227415 + 23963620 23965305 L1PA4 6152 + 3276 4976 13133 10 0 1 232 8 25 140 3 0 1292 chain 69844 chrY 57227415 + 23965305 23966174 L1PA4 6152 + 5101 5968 24033 165 7 0 32 0 4 48 1 0 4 4 7 76 0 1 171 2 0 359 chain 21001 chrY 57227415 + 23982756 23982988 L1PA3long 6157 + 3469 3701 55121 232 chain 341291 chrY 57227415 + 24058701 24062979 L1P1 4361 + 59 4326 6041 72 0 1 108 1 11 634 0 1 9 0 1 319 0 3 46 0 1 290 0 2 293 1 2 749 0 1 170 2 1 47 0 1 4 2 1 107 26 0 750 3 0 468 1 0 154 1 0 21 chain 434134 chrY 57227415 + 24063647 24068924 L1PA4 6152 + 2 5225 4683 578 1 0 256 41 0 718 24 0 290 0 1 4 1 0 842 1 0 135 0 1 4 2 1 338 0 1 100 0 1 4 6 5 468 0 1 884 0 3 217 0 7 250 0 1 113 chain 105830 chrY 57227415 + 24128531 24129748 L1PA3long 6157 + 4927 6144 17588 380 2 1 676 0 1 4 1 0 144 0 1 10 chain 85511 chrY 57227415 + 24137393 24138461 L1P1 4361 + 1 1070 20535 193 1 0 4 0 1 136 19 20 715 chain 70694 chrY 57227415 + 24216469 24217257 L1PA3long 6157 + 5361 6152 23828 583 0 3 205 chain 71580 chrY 57227415 + 24221316 24222110 L1PA2 6032 + 5234 6028 23640 794 chain 381553 chrY 57227415 + 24222599 24226953 L1PA4 6152 + 712 5077 5457 18 1 0 313 0 2 34 3 0 8 8 11 1604 4 9 497 0 1 1139 0 4 725 chain 36627 chrY 57227415 + 24234111 24234574 LTR15 485 + 6 479 37000 50 1 0 223 1 5 155 3 0 12 0 9 13 0 1 5 chain 16167 chrY 57227415 + 24328031 24328310 LTR39 781 + 193 474 60792 57 47 40 131 14 23 30 chain 142444 chrY 57227415 + 24412471 24414091 L1PA3long 6157 + 3807 5426 12894 1233 1 0 386 chain 10553 chrY 57227415 + 24419569 24420055 LTR12D 1347 + 589 1081 69316 79 78 0 26 45 47 27 193 276 4 1 0 33 chain 2918 chrY 57227415 + 24419693 24419726 LTR12D 1347 + 444 477 85026 33 chain 429474 chrY 57227415 + 24420410 24426157 HERV9-int 5642 + 4 5642 4756 150 1 2 235 0 1 112 1 2 93 12 12 177 4 3 297 80 0 19 16 12 146 0 1 314 9 10 250 1 3 992 0 2 577 16 15 582 9 11 112 0 3 5 6 3 781 7 6 78 6 10 191 28 27 215 10 8 36 8 6 21 2 1 60 1 0 13 14 10 10 33 7 17 chain 46257 chrY 57227415 + 24428786 24429415 LTR12D 1347 + 460 1347 30941 76 1 32 119 7 24 163 0 1 4 2 1 34 23 233 200 chain 6731 chrY 57227415 + 24484536 24484614 L1PA4 6152 + 2525 2603 78536 78 chain 533253 chrY 57227415 + 24488693 24494708 L1PA2 6032 + 3 6028 1695 68 1 2 190 0 1 4 1 0 844 0 1 427 0 6 1023 1 0 535 0 1 404 0 1 4 3 2 306 0 1 983 0 1 1221 chain 397093 chrY 57227415 + 24505408 24510121 L1PA4 6152 + 1228 5968 5194 8 0 1 498 0 2 35 4 0 103 0 16 415 7 6 859 1 0 121 1 0 390 0 1 557 0 1 394 1 0 112 7 22 293 0 1 51 7 7 162 1 0 27 3 2 656 chain 488005 chrY 57227415 + 24553562 24559661 L1PA5 6144 + 0 6123 3470 8 0 1 33 25 26 666 16 0 169 1 7 256 0 8 45 1 0 287 0 18 646 0 1 134 14 13 221 2 0 131 1 0 4 1 3 343 6 8 204 1 0 258 33 34 151 0 1 774 2 5 219 0 1 604 9 10 106 0 1 495 2 1 231 chain 3620 chrY 57227415 + 24570723 24570799 LTR12 884 + 157 208 94270 36 25 0 15 chain 35778 chrY 57227415 + 24580904 24581304 L1PA3long 6157 + 5752 6152 37548 400 chain 35193 chrY 57227415 + 24736845 24737381 MLT2A2 560 + 0 545 37901 299 15 14 83 55 65 84 chain 5423 chrY 57227415 + 24755778 24755854 L1MA4 2864 + 92 164 83590 7 4 0 65 chain 545513 chrY 57227415 + 24776006 24782046 L1PA2 6032 + 0 6031 1001 229 0 1 27 1 0 458 1 0 399 3 0 1455 1 0 2609 0 1 839 5 0 13 chain 3459 chrY 57227415 + 24924527 24924585 L1PB3 3668 + 3508 3564 95549 20 8 6 30 chain 6342 chrY 57227415 + 24950863 24951084 LTR12C 1709 + 1033 1140 79859 24 41 0 49 86 13 21 chain 29791 chrY 57227415 + 24958216 24958855 LTR12C 1709 + 676 1076 42244 19 79 1 42 41 0 99 1 0 155 119 0 84 chain 4306 chrY 57227415 + 24958235 24958287 LTR12C 1709 + 1055 1107 76040 52 chain 3658 chrY 57227415 + 24958894 24958935 LTR12C 1709 + 677 718 93931 41 chain 46007 chrY 57227415 + 24987294 24987825 L1PA4 6152 + 5610 6136 31059 395 5 0 131 chain 8341 chrY 57227415 + 25006834 25006929 AluY 311 + 5 100 74049 95 chain 395148 chrY 57227415 + 25134249 25139330 L1PA5 6144 + 1 5187 5234 120 0 14 21 0 12 508 0 13 287 9 12 181 9 0 60 1 0 13 9 10 362 5 4 100 0 1 8 0 1 572 15 0 11 6 4 252 0 3 16 0 1 83 0 1 242 0 1 244 1 0 126 0 1 386 4 1 9 1 4 57 0 15 73 0 4 9 8 4 17 0 62 234 0 1 176 0 4 198 1 0 540 0 1 107 chain 75899 chrY 57227415 + 25142347 25143315 LTR5_Hs 974 + 0 974 22612 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 9841 chrY 57227415 + 25164695 25164823 L1PA4 6152 + 1109 1241 70737 16 0 1 36 0 3 76 chain 247892 chrY 57227415 + 25185568 25188484 L1PA4 6152 + 2604 5516 8290 1269 6 1 1505 0 1 136 chain 63763 chrY 57227415 + 25203423 25206582 HERVK11-int 2540 + 678 2080 25461 54 14 9 10 22 16 5 2 0 21 1951 273 46 69 67 9 3 0 27 17 7 4 1 0 24 15 4 35 22 2 63 7 1 277 18 12 75 20 15 101 1 0 66 6 5 8 0 1 103 13 12 50 chain 15762 chrY 57227415 + 25206582 25206799 MER11B 1079 + 824 1048 61334 55 0 1 65 8 14 89 chain 466547 chrY 57227415 + 25254575 25262705 L1PA5 6144 + 0 5768 3944 886 0 1 174 0 1 73 10 11 291 2370 0 896 0 2 835 1 0 25 4 1 70 1 2 142 0 1 67 4 5 17 1 0 8 0 2 477 0 1 358 0 2 274 1 0 241 8 7 845 0 2 51 chain 60481 chrY 57227415 + 25257648 25258376 L1PA3long 6157 + 5418 6157 26240 574 2 1 26 5 17 121 chain 53369 chrY 57227415 + 25328098 25329158 MER4E1 777 + 0 770 28451 17 7 0 21 2 1 157 7 5 4 1 0 92 4 5 30 304 0 158 7 29 24 9 7 6 0 4 210 chain 538118 chrY 57227415 + 25369702 25375716 L1PA2 6032 + 1 6019 1445 883 0 1 841 0 1 704 0 1 1050 0 1 141 0 1 283 0 3 280 0 1 379 0 1 301 9 0 398 0 3 745 chain 105774 chrY 57227415 + 25545548 25546768 L1PA3long 6157 + 4927 6144 17593 380 5 1 676 0 1 4 1 0 144 0 1 10 chain 443037 chrY 57227415 + 25554405 25560750 L1PA4 6152 + 0 6137 4513 200 1 0 4 0 1 136 19 20 860 17 15 307 0 24 171 0 1 46 6 7 585 0 33 660 0 5 186 1 3 234 5 11 472 0 22 316 1 0 307 3 16 118 0 1 235 853 538 150 4 5 448 chain 211948 chrY 57227415 + 25687385 25689826 L1PA3long 6157 + 3713 6157 9288 928 1 0 949 15 9 220 1 2 186 0 8 42 0 1 99 chain 275126 chrY 57227415 + 25710291 25713238 L1HS 6032 + 3069 6016 7578 2947 chain 38193 chrY 57227415 + 25724335 25724796 L1PA4 6152 + 4153 4620 35910 198 4 8 126 0 2 133 chain 45015 chrY 57227415 + 25724802 25725356 L1PA4 6152 + 4625 5187 31575 4 0 1 284 15 21 23 1 2 227 chain 87198 chrY 57227415 + 25737867 25738930 MER11C 1089 + 7 1074 20193 402 0 3 186 0 1 475 chain 56982 chrY 57227415 + 25759793 25760444 L1P1 4361 + 3677 4328 27269 95 0 1 161 0 1 215 1 0 155 1 0 23 chain 276203 chrY 57227415 + 25763585 25767503 L1PA4 6152 + 0 6146 7541 708 11 5 69 0 1 271 0 1 175 0 1 5 1 0 169 0 9 307 0 1 193 0 1 26 1 0 196 1 2 266 1 133 244 530 2618 124 0 1 465 5 6 137 1 0 12 chain 47362 chrY 57227415 + 25876270 25876806 L1PA3long 6157 + 5620 6156 30517 536 chain 235882 chrY 57227415 + 25888420 25891458 L1P1 4361 + 5 3080 8575 117 0 14 450 0 10 142 1 0 206 1 3 67 1 0 51 0 1 169 13 14 187 1 2 294 0 1 523 0 17 37 18 9 562 0 1 4 1 0 133 0 1 60 chain 356030 chrY 57227415 + 25891554 25895981 L1PA5 6144 + 614 5023 5846 87 0 1 28 0 1 240 3 4 197 1 2 245 1 2 9 11 10 110 0 2 318 2 1 443 7 1 213 1 0 234 0 1 118 1 0 36 1 2 1424 1 5 244 5 6 162 26 4 259 chain 26724 chrY 57227415 + 25932265 25932553 L1PA2 6032 + 5742 6030 46650 288 chain 174429 chrY 57227415 + 25937669 25939643 L1PA3long 6157 + 3370 5346 10873 494 0 1 745 2 3 733 chain 9644 chrY 57227415 + 26022236 26022357 LTR22 571 + 0 121 71175 121 chain 32210 chrY 57227415 + 26068681 26069061 L1PA2 6032 + 5652 6032 40177 214 5 0 7 5 10 149 chain 13948 chrY 57227415 + 26071177 26072126 LTR15 485 + 0 475 63672 65 763 289 121 chain 9669 chrY 57227415 + 26073393 26073524 L1P1 4361 + 1 133 70635 10 3 4 118 chain 207024 chrY 57227415 + 26073524 26075948 L1PA4 6152 + 3083 5518 9464 87 0 1 141 0 1 668 1 2 168 0 3 7 0 1 112 1 4 1196 0 1 43 chain 31866 chrY 57227415 + 26091302 26091743 MER9a2 513 + 0 443 40442 12 1 2 32 0 1 198 13 31 7 18 0 160 chain 51305 chrY 57227415 + 26092432 26093178 HERVK9-int 4720 + 6 729 29126 17 55 39 62 1 0 9 1 0 20 31 26 550 chain 29731 chrY 57227415 + 26108743 26109197 LTR7B 505 + 0 495 42327 108 0 10 57 15 77 28 29 0 85 1 0 66 24 23 41 chain 22725 chrY 57227415 + 26147455 26147768 L1PA6 6164 + 5849 6160 52795 142 11 12 151 3 0 6 chain 128925 chrY 57227415 + 26182745 26184297 LTR12C 1709 + 0 1709 14158 101 3 0 5 0 3 200 0 1 4 1 0 385 0 159 253 1 0 6 2 0 107 0 4 53 4 1 427 chain 43438 chrY 57227415 + 26186260 26186821 LTR22 571 + 0 564 32483 297 0 1 172 9 11 83 chain 40571 chrY 57227415 + 26211826 26212355 MER41A 554 + 0 546 34244 197 0 1 174 2 1 17 5 17 61 0 5 73 chain 201859 chrY 57227415 + 26227311 26229519 L1PA2 6032 + 3823 6032 9645 53 0 1 2155 chain 23210 chrY 57227415 + 26241688 26241964 AluSp 311 + 23 299 52069 276 chain 46078 chrY 57227415 + 26242356 26242943 MER41B 635 + 10 609 31025 43 0 1 38 1 0 36 0 1 328 1 9 34 0 3 106 chain 21289 chrY 57227415 + 26260011 26260414 L1PA14 3548 + 3067 3454 54783 42 9 5 17 2 0 6 1 0 60 24 0 8 0 23 58 4 5 18 0 1 22 1 0 9 4 0 36 47 42 35 chain 368848 chrY 57227415 + 26286031 26290378 L1P1 4361 + 1 4341 5679 215 5 1 357 1 0 118 7 0 342 1 0 266 0 1 4 9 8 881 0 4 1056 0 4 258 0 1 634 1 0 154 1 0 23 2 1 12 chain 3368 chrY 57227415 + 26301398 26301472 MER58A 224 + 4 80 96403 15 6 7 17 4 6 26 1 0 5 chain 27722 chrY 57227415 + 26311327 26311625 AluYa5 310 + 8 305 45287 89 1 0 208 chain 522857 chrY 57227415 + 26339739 26346012 L1PA3long 6157 + 4 6142 2142 149 0 1 171 6 7 449 0 128 137 1 0 528 0 5 785 0 69 930 2 1 1946 0 4 14 343 0 84 0 1 411 0 1 222 0 3 5 3 0 87 chain 517600 chrY 57227415 + 26601789 26607897 L1PA3long 6157 + 0 6149 2388 126 0 14 14 14 12 54 25 19 203 0 13 71 4 0 52 0 1 291 6 7 620 0 1 827 0 1 362 3 1 420 4 5 1181 0 1 30 0 2 29 0 4 320 0 1 335 0 13 788 0 1 246 0 1 83 chain 302515 chrY 57227415 + 56851643 56855234 L1PA4 6152 + 2556 6152 6772 141 0 3 509 1 0 40 8 9 348 1 0 25 0 5 108 1 0 1290 10 9 267 4 0 230 0 3 403 0 1 205 chain 14455 chrY 57227415 + 56909059 56909317 L1M1 2793 + 2228 2486 62959 35 24 27 150 23 21 21 1 0 4 chain 85446 chrY 57227415 + 56926532 56927558 MER11A 1151 + 0 1151 20545 86 0 91 22 2 0 95 0 2 92 0 1 290 0 1 90 3 0 38 0 1 12 5 38 172 0 1 119 chain 168000 chrY 57227415 + 56927574 56929793 L1PA10 4194 + 634 2891 11214 49 9 8 11 0 9 8 9 0 392 1 0 146 0 3 30 0 1 21 6 11 511 0 3 385 0 4 20 12 16 264 2 1 5 0 15 81 9 11 37 3 7 208 chain 17277 chrY 57227415 + 56936587 56936851 L1PA16 3655 + 3378 3619 59483 200 36 18 7 5 0 16 chain 36043 chrY 57227415 + 56949180 56949706 L1PA16 3655 + 3047 3563 37390 105 6 0 43 3 1 5 1 0 89 2 0 43 4 0 45 0 6 107 16 15 57 chain 369458 chrY 57227415 + 56995324 56999834 L1P2 5180 + 6 4499 5669 144 2 1 47 10 9 40 3 2 117 0 8 22 5 4 96 13 12 7 1 0 111 4 5 156 1 0 6 1 0 143 0 6 692 1 0 195 1 0 18 0 5 475 23 8 655 0 1 69 0 1 19 2 1 96 2 0 322 0 4 851 0 4 58 20 1 82 chain 129104 chrY 57227415 + 57000000 57001488 L1PA6 6164 + 4673 6161 14133 1488 chain 21942 chrY 57227415 + 57028359 57028702 THE1B 368 + 0 368 53912 5 0 1 38 5 20 108 1 0 26 35 45 125 chain 117215 chrY 57227415 + 57028702 57030166 THE1B-int 1605 + 0 1605 16016 430 0 25 298 19 133 74 0 1 379 0 1 264 chain 11454 chrY 57227415 + 57052138 57052513 LTR12D 1347 + 600 1094 67826 114 26 2 35 170 314 17 1 0 12 chain 102876 chrY 57227415 + 57089748 57090884 L1PA3long 6157 + 5019 6157 17967 639 0 1 355 0 1 142 chain 20413 chrY 57227415 + 57113654 57113890 L1PA7 6471 + 6224 6461 55871 91 0 1 145 chain 8962 chrY 57227415 + 57123402 57123548 L1M3 994 + 172 318 72643 28 17 18 77 1 0 23 chain 7046 chrY 57227415 + 57142951 57143055 LTR7B 505 + 402 505 77454 39 15 14 50 chain 40393 chrY 57227415 + 57169016 57169552 THE1D-int 1627 + 0 537 34390 141 0 2 163 13 12 219 chain 19927 chrY 57227415 + 57174460 57174800 THE1D 372 + 18 372 56482 45 0 1 38 1 0 33 80 94 143 chain 3570 chrY 57227415 + 57204238 57204312 L1MC 810 + 240 313 94654 34 17 16 23 chain 109268 chrY 57227415 + 57204996 57206367 L1P1 4361 + 15 1405 17145 107 0 14 15 9 10 15 13 12 37 1 0 64 1 0 48 7 6 193 1 0 701 1 0 44 0 10 114