track cactusProgMaf shortLabel Progressive Cactus MAF XY Pan_paniscus 20221111 longLabel Progressive Cactus MAF XY Pan_paniscus 20221111 priority 9 visibility full type bigMaf bigDataUrl ../data/t2t-apes-xy-jan5-Pan_paniscus.bb summary ../data/t2t-apes-xy-jan5-Pan_paniscus.bigMafSummary.bb html ../documentation/hubCentral.html speciesOrder Pan_troglodytes hs1 Gorilla_gorilla Pongo_abelii Pongo_pygmaeus Symphalangus_syndactylus track cactusPanMaf shortLabel Minigraph-Cactus MAF XY Pan_paniscus 20221111 longLabel Minigraph-Cactus MAF XY Pan_paniscus 20221111 priority 9 visibility full type bigMaf bigDataUrl ../data/t2t-apes-xy-pan-jan5-Pan_paniscus.bb summary ../data/t2t-apes-xy-pan-jan5-Pan_paniscus.bigMafSummary.bb html ../documentation/hubCentral.html speciesOrder Pan_troglodytes hs1 Gorilla_gorilla Pongo_abelii Pongo_pygmaeus Symphalangus_syndactylus track hubProgCentral compositeTrack on shortLabel Progressive Cactus T2T Apes XY 20221111 longLabel Progressive Cactus T2T Apes XY 20221111 group comphub subGroup1 view Track_Type Snake=Alignments subGroup2 orgs Organisms Anc1=Anc1 Anc2=Anc2 Anc3=Anc3 Gorilla_gorilla=Gorilla_gorilla Anc5=Anc5 Anc6=Anc6 Pan_troglodytes=Pan_troglodytes Pan_paniscus=Pan_paniscus hs1=hs1 Anc4=Anc4 Pongo_abelii=Pongo_abelii Pongo_pygmaeus=Pongo_pygmaeus Symphalangus_syndactylus=Symphalangus_syndactylus dragAndDrop subTracks #allButtonPair on dimensions dimensionX=view dimensionY=orgs noInherit on priority 0 centerLabelsDense on visibility full html ../documentation/hubProgCentral type bigBed 3 track hubProgCentralAlignments shortLabel Alignments view Alignments visibility full subTrack hubProgCentral track snakeProghs1 longLabel hs1 shortLabel hs1 otherSpecies hs1 visibility full parent hubProgCentralAlignments priority 8 bigDataUrl ../lod_prog.txt type halSnake group snake subGroups view=Snake orgs=hs1 track snakeProgAnc1 longLabel Anc1 shortLabel Anc1 otherSpecies Anc1 visibility hide parent hubProgCentralAlignments off priority 2 bigDataUrl ../lod_prog.txt type halSnake group snake subGroups view=Snake orgs=Anc1 track snakeProgAnc2 longLabel Anc2 shortLabel Anc2 otherSpecies Anc2 visibility hide parent hubProgCentralAlignments off priority 3 bigDataUrl ../lod_prog.txt type halSnake group snake subGroups view=Snake orgs=Anc2 track snakeProgAnc3 longLabel Anc3 shortLabel Anc3 otherSpecies Anc3 visibility hide parent hubProgCentralAlignments off priority 4 bigDataUrl ../lod_prog.txt type halSnake group snake subGroups view=Snake orgs=Anc3 track snakeProgGorilla_gorilla longLabel Gorilla_gorilla shortLabel Gorilla_gorilla otherSpecies Gorilla_gorilla visibility full parent hubProgCentralAlignments priority 5 bigDataUrl ../lod_prog.txt type halSnake group snake subGroups view=Snake orgs=Gorilla_gorilla track snakeProgAnc5 longLabel Anc5 shortLabel Anc5 otherSpecies Anc5 visibilitiy hide parent hubProgCentralAlignments priority 6 bigDataUrl ../lod_prog.txt type halSnake group snake subGroups view=Snake orgs=Anc5 track snakeProgAnc6 longLabel Anc6 shortLabel Anc6 otherSpecies Anc6 visibility hide parent hubProgCentralAlignments off priority 7 bigDataUrl ../lod_prog.txt type halSnake group snake subGroups view=Snake orgs=Anc6 track snakeProgPan_troglodytes longLabel Pan_troglodytes shortLabel Pan_troglodytes otherSpecies Pan_troglodytes visibility full parent hubProgCentralAlignments priority 8 bigDataUrl ../lod_prog.txt type halSnake group snake subGroups view=Snake orgs=Pan_troglodytes track snakeProgAnc4 longLabel Anc4 shortLabel Anc4 otherSpecies Anc4 visibility hide parent hubProgCentralAlignments off priority 11 bigDataUrl ../lod_prog.txt type halSnake group snake subGroups view=Snake orgs=Anc4 track snakeProgPongo_abelii longLabel Pongo_abelii shortLabel Pongo_abelii otherSpecies Pongo_abelii visibility full parent hubProgCentralAlignments priority 12 bigDataUrl ../lod_prog.txt type halSnake group snake subGroups view=Snake orgs=Pongo_abelii track snakeProgPongo_pygmaeus longLabel Pongo_pygmaeus shortLabel Pongo_pygmaeus otherSpecies Pongo_pygmaeus visibility full parent hubProgCentralAlignments off priority 13 bigDataUrl ../lod_prog.txt type halSnake group snake subGroups view=Snake orgs=Pongo_pygmaeus track snakeProgSymphalangus_syndactylus longLabel Symphalangus_syndactylus shortLabel Symphalangus_syndactylus otherSpecies Symphalangus_syndactylus visibility full parent hubProgCentralAlignments off priority 14 bigDataUrl ../lod_prog.txt type halSnake group snake subGroups view=Snake orgs=Symphalangus_syndactylus track hubPanCentral compositeTrack on shortLabel Minigraph-Cactus T2T Apes XY 20221111 longLabel Minigraph-Cactus T2T Apes XY 20221111 group comphub subGroup1 view Track_Type Snake=Alignments subGroup2 orgs Organisms Anc0=Anc0 Gorilla_gorilla=Gorilla_gorilla Pan_troglodytes=Pan_troglodytes Pan_paniscus=Pan_paniscus hs1=hs1 Pongo_abelii=Pongo_abelii Pongo_pygmaeus=Pongo_pygmaeus Symphalangus_syndactylus=Symphalangus_syndactylus dragAndDrop subTracks #allButtonPair on dimensions dimensionX=view dimensionY=orgs noInherit on priority 0 centerLabelsDense on visibility full html ../documentation/hubPanCentral type bigBed 3 track hubPanCentralAlignments shortLabel Alignments view Alignments visibility full subTrack hubPanCentral track snakePanhs1 longLabel hs1 shortLabel hs1 otherSpecies hs1 visibility full parent hubPanCentralAlignments priority 4 bigDataUrl ../lod_pan.txt type halSnake group snake subGroups view=Snake orgs=hs1 track snakePanAnc0 longLabel Anc0 shortLabel Anc0 otherSpecies Anc0 visibility hide parent hubPanCentralAlignments priority 2 bigDataUrl ../lod_pan.txt type halSnake group snake subGroups view=Snake orgs=Anc0 track snakePanGorilla_gorilla longLabel Gorilla_gorilla shortLabel Gorilla_gorilla otherSpecies Gorilla_gorilla visibility full parent hubPanCentralAlignments priority 3 bigDataUrl ../lod_pan.txt type halSnake group snake subGroups view=Snake orgs=Gorilla_gorilla track snakePanPan_troglodytes longLabel Pan_troglodytes shortLabel Pan_troglodytes otherSpecies Pan_troglodytes visibility full parent hubPanCentralAlignments priority 4 bigDataUrl ../lod_pan.txt type halSnake group snake subGroups view=Snake orgs=Pan_troglodytes track snakePanPongo_abelii longLabel Pongo_abelii shortLabel Pongo_abelii otherSpecies Pongo_abelii visibility full parent hubPanCentralAlignments off priority 7 bigDataUrl ../lod_pan.txt type halSnake group snake subGroups view=Snake orgs=Pongo_abelii track snakePanPongo_pygmaeus longLabel Pongo_pygmaeus shortLabel Pongo_pygmaeus otherSpecies Pongo_pygmaeus visibility full parent hubPanCentralAlignments off priority 8 bigDataUrl ../lod_pan.txt type halSnake group snake subGroups view=Snake orgs=Pongo_pygmaeus track snakePanSymphalangus_syndactylus longLabel Symphalangus_syndactylus shortLabel Symphalangus_syndactylus otherSpecies Symphalangus_syndactylus visibility full parent hubPanCentralAlignments off priority 9 bigDataUrl ../lod_pan.txt type halSnake group snake subGroups view=Snake orgs=Symphalangus_syndactylus